BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (573 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040278|gb|ACT57074.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 1169 bits (3023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/573 (100%), Positives = 573/573 (100%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS
Sbjct: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD
Sbjct: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR
Sbjct: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR
Sbjct: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
Sbjct: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF
Sbjct: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF
Sbjct: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE
Sbjct: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK
Sbjct: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN
Sbjct: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573


>gi|315121801|ref|YP_004062290.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495203|gb|ADR51802.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 571

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/571 (82%), Positives = 526/571 (92%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M IFE+IPQVIG+ALSERGYVNLT+VQ+A+L+P+LR+KD+LVSAQTGSGKTVAFGLALAS
Sbjct: 1   MNIFEDIPQVIGDALSERGYVNLTAVQKAVLDPNLRDKDILVSAQTGSGKTVAFGLALAS 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL   DRF PA+APLALAIAPTRELA+QVGRELEWLYAKTGVVV+VCIGGVS+HRERRD
Sbjct: 61  NLLEGKDRFGPAAAPLALAIAPTRELAMQVGRELEWLYAKTGVVVSVCIGGVSLHRERRD 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQNG+HIVVGTPGRLCDHIRGKGLN+SHLKAV+LDEADEMLDLGFRDDIEFILDSSP+KR
Sbjct: 121 LQNGSHIVVGTPGRLCDHIRGKGLNMSHLKAVILDEADEMLDLGFRDDIEFILDSSPEKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           RMLMFSATIS AITTLAKNYQKDAVR+NIASENRQHSDIDYRA+LV+LSDRDNAIVN+LR
Sbjct: 181 RMLMFSATISSAITTLAKNYQKDAVRINIASENRQHSDIDYRAILVSLSDRDNAIVNLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ AKNAIVFCSTRASVSRFT+VL EHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
Sbjct: 241 YYEAKNAIVFCSTRASVSRFTRVLGEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLPDLE+VIHAELSSNPENLLHRSGRTGRAGRKG+SVFV+PQNMQRRAERLF
Sbjct: 301 TDVAARGIDLPDLEIVIHAELSSNPENLLHRSGRTGRAGRKGVSVFVVPQNMQRRAERLF 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +EANVS  WE APSVEAI ERD+QR+L +PL +D IQGDEKK +  LLAKHDPEKIAA F
Sbjct: 361 KEANVSATWESAPSVEAIMERDSQRMLHNPLLIDPIQGDEKKSIGDLLAKHDPEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR++RAG+C PE+I  VSL +GRDRFRDDSR  + GG SRDNF+ SSWFSLS+GS+QKAE
Sbjct: 421 LRLNRAGMCPPEKIKAVSLSTGRDRFRDDSRDSRFGGASRDNFRNSSWFSLSIGSEQKAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           ARWL+PMLCR SGI+R SIGAIRV PD TF+E++  GV+ LRR VKLDKGI +KYL GEK
Sbjct: 481 ARWLIPMLCRKSGIDRHSIGAIRVLPDQTFIEIAESGVEFLRRPVKLDKGITIKYLNGEK 540

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           PDFRG +SS F+S+++ D   KRFK+FKGAS
Sbjct: 541 PDFRGGRSSSFRSRSNYDNTNKRFKKFKGAS 571


>gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 651

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/565 (58%), Positives = 419/565 (74%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  WE  PS E + ERD +R+L DP+F D+ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWERPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAF-KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R  RD++  +     G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYAPAQKGPREDFGPSVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLK 534
           AE RWL+PMLCR+ G+ ++ IGAI++QP+ T+VE+   SADG  + L     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGGVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K+S+D
Sbjct: 541 RLSG-MPDFSRAAAPKPYAGKSSRD 564


>gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 651

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/565 (58%), Positives = 418/565 (73%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F D+ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R  RD++ +++    G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAESYEPAQKGPREDFGPSVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ T+VE+   SADG  + L     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K+S+D
Sbjct: 541 RLSG-TPDFSRAAAPKPYAGKSSRD 564


>gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 651

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/565 (57%), Positives = 417/565 (73%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F D+ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           +R++R    APE++  V++  G  R  RD++ +++    G R++F  S WFS+SVG KQ 
Sbjct: 421 VRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAVSYEPAQKGPREDFGPSVWFSISVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ T+VE++    D  +  +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADSFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K+S+D
Sbjct: 541 RLSG-TPDFSRAAAPKPYAGKSSRD 564


>gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
 gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
          Length = 615

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/551 (59%), Positives = 409/551 (74%), Gaps = 7/551 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   I +AL +RGY +LT VQ+A+L+P+L +KD LVSAQTGSGKTVAFG+ALA+
Sbjct: 1   MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL+EN RF  ASAPLALAIAPTRELA+QV RELEWLY   GV +A C+GG+ +  ERR 
Sbjct: 61  TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHI+VGTPGRLCDHI+   L++S L+AVVLDEADEMLDLGFR+D+EFIL+ SP  R
Sbjct: 121 LERGAHIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQK+AVR+  ASE +QH DI+YRA+LV  SDR+NAI+N LR
Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVTGSDRENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGEL+Q ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S  V+P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A VS  W   PSVE I ERD  R+L DP   +++  DE   V  LL +H  EK+AA F
Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPALTEAVADDEHDFVKQLLEQHGAEKVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQK 478
           +R++ AG  APE+IT V+L + R   RD     +     R+  +F  S+WFSLSVG KQ 
Sbjct: 421 VRLYHAGRSAPEDITEVALDNTRKPRRDSFETPENDAPRRERSDFSDSAWFSLSVGRKQS 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534
           AE RWL+PMLCR   I RQ IGAIR+Q   TFVE++AD VD     + + + L+KGI+LK
Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540

Query: 535 YLGGEKPDFRG 545
            L G KP+  G
Sbjct: 541 ALEG-KPEMTG 550


>gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 659

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/576 (56%), Positives = 419/576 (72%), Gaps = 11/576 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGGERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ++AVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRNAVRISTAAEAKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVGG-GSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R  RD++  F+    G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLLEVTVQDGGSRKRRDNAEPFEPAQRGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDFRGYKS----SGFKSKNSQDGATKRFKR 566
            L G  PDF    S    +G  S++ + G T R +R
Sbjct: 541 KLSG-TPDFSRAPSPKPYAGKPSRDERPGDTFREER 575


>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
 gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
          Length = 615

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/568 (58%), Positives = 414/568 (72%), Gaps = 7/568 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   I +AL +RGY +LT VQ+A+L P+L  KD LVSAQTGSGKTVAFG+ALA+
Sbjct: 1   MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL+EN RF  ASAPLALAIAPTRELA+QV RELEWLY   GV +A C+GG+ +  ERR 
Sbjct: 61  TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHI+   L++S ++AVVLDEADEMLDLGFR+D+EFIL+ SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQK+AVR+  ASE +QH DI+YRA+LV+ SDR+NAI+N LR
Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGEL+Q ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S  V+P + +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A VS  W   PSVE I ERD  R+L DP   +++  DE+  V+ LL +H  EK+AA F
Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQK 478
           +R++ +G  APE+I  V+L + R   RD     +     RD  +F  S+WFSLSVG KQ 
Sbjct: 421 VRLYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGRKQS 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534
           AE RWL+PMLCR   I RQ IGAIR+Q   TFVE++AD VD     + + + L+KGI+LK
Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATK 562
            + G KP+  G      +   +Q   TK
Sbjct: 541 QMEG-KPEMTGNAREDTRPATAQRKFTK 567


>gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 651

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/565 (56%), Positives = 414/565 (73%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A+APLAL IAPTRELA+QV RELEWL+  TG V+  C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAAAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++   R+R  RD++  ++    G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDDRNRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K S+D
Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564


>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 651

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/565 (56%), Positives = 412/565 (72%), Gaps = 8/565 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWL+  TG V+  C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  +++   R R  RD++  ++    G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEITVQDDRSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K S+D
Sbjct: 541 RLSG-TPDFSRAPAPKPYAGKPSRD 564


>gi|227820653|ref|YP_002824623.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
 gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
          Length = 633

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/558 (57%), Positives = 404/558 (72%), Gaps = 15/558 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLAL  
Sbjct: 1   MTEFEGIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL    +F    APLAL IAPTRELA+QV RELEWLY  TG  +A C+GG+ +  ERR 
Sbjct: 61  TLLGPARQFDSPGAPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS L+A+VLDEADEMLDLGFR+D+EFIL++SP +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRDSLDISALRAIVLDEADEMLDLGFREDLEFILEASPTER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ +ASE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVASEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 YYDARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERNHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +NP+ LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS E +  RD +R++ D  F + ++ DE+ +V  L+ +H  EK+AA F
Sbjct: 361 DGARITATWAKPPSAEDVTGRDDERLIADAAFDEPLRDDEQTIVQALIDRHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE++ V L   R + R D+ AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSSRSAPEELSDVPLFDDRKKARRDAPAFTGDSAAAPRADFTDGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG +     +     L+KGI++K
Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVELTADGAERFLTAIGPNRTLEKGIRVK 540

Query: 535 YLGG---------EKPDF 543
            L G         +KP+F
Sbjct: 541 TLPGAPDGSRPRDDKPEF 558


>gi|307317997|ref|ZP_07597434.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306896399|gb|EFN27148.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 630

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/587 (55%), Positives = 411/587 (70%), Gaps = 22/587 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+ A APLAL IAPTRELA+QV REL+WLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS + +  RD +RI  DP   ++ + DE+ +V+ L++++  EKIAA F
Sbjct: 361 ENARITAAWAKPPSADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R D  AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L   +     L+KGI++K
Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540

Query: 535 YLGG---------EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            L G         +KPDF        K +     A +  K FK   K
Sbjct: 541 TLPGAPDSSRPRQDKPDFE-------KKRPPATAAEREHKDFKPKRK 580


>gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 636

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/574 (56%), Positives = 406/574 (70%), Gaps = 20/574 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE I   I +AL++RGY  LT VQ+++L+PDL  KD LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFEGIVPAIAQALAKRGYETLTPVQKSMLDPDLAGKDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A  PLALAIAPTRELA+QV RELEWLY  TG  +  C+GG+ +  E+R 
Sbjct: 61  TLLDGAERFGRAGTPLALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA+NYQ+DAVR+  A+E +QH DIDYRA+ V  SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIAKLAENYQRDAVRIASATEAKQHVDIDYRALTVVPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA++ +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADIPTNPETLLHRSGRTGRAGRKGVSALIVPLSGRRRTERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +   W   PS + + +RD +R+L DP+F   +  DE+ +V  LL  H  E++AA F
Sbjct: 361 EAARIRATWAKPPSADEVSQRDDERLLADPIFSAPLGEDEQSLVQQLLRTHGAEQVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV-------GGGSRDNFKGSSWFSLSV 473
           LR +RAG  APE++  V     R + R D   F V        G  R++F    W SLSV
Sbjct: 421 LRQYRAGHSAPEDLQDVPAEGERKKPRRDD--FPVTRYDEAPAGAGRNDFTDGVWVSLSV 478

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDK 529
           G KQ AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE SA+G +     +     L++
Sbjct: 479 GRKQNAEPRWLIPMLCRNGNLTKRDIGAIKMQPEETFVEFSAEGAERFLTAIGPDKTLER 538

Query: 530 GIQLKYLGGEKPDFR------GYKSSGFKSKNSQ 557
           GI++K L G  PDF       GY    F  K+++
Sbjct: 539 GIRVKPLDG-IPDFSQAKREGGYGKKPFAEKSAR 571


>gi|15964184|ref|NP_384537.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307301327|ref|ZP_07581089.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073360|emb|CAC41868.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306903783|gb|EFN34370.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 630

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/558 (56%), Positives = 402/558 (72%), Gaps = 15/558 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+ A APLAL IAPTRELA+QV REL+WLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAK+YQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKSYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   P  + +  RD +RI  DP   ++ + DE+ +V+ L++++  EKIAA F
Sbjct: 361 ENARITAAWAKPPLADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R D  AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L   +     L+KGI++K
Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540

Query: 535 YLGG---------EKPDF 543
            L G         +KPDF
Sbjct: 541 TLPGAPDSSRPRQDKPDF 558


>gi|150395295|ref|YP_001325762.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150026810|gb|ABR58927.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 626

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 317/578 (54%), Positives = 405/578 (70%), Gaps = 15/578 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTELAGIAPAIAEALAKRGYETLTPVQQAMLDPALGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+   APLAL IAPTRELA+QV RELEWLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARQFAQPGAPLALVIAPTRELALQVKRELEWLYEIAGATIASCVGGMDMRSERRM 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P  R
Sbjct: 121 LDRGAHIVVGTPGRLCDHIRRGSLDISELKAVVLDEADEMLDLGFREDLEFILEAAPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ + SE +QH DI+YRA+LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRALLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS + +  RD +RI  DP   +  + DE+ +V+ L+  +  EKIAA F
Sbjct: 361 ENARITAAWAKPPSADEVALRDDERIAADPALAEPPREDEQAIVETLIGLYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R +S AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELAEVAVYDDRKKARRESPAFSGDSDPAPRADFADGRWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L   +     L++GI++K
Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVEMTADGAERLLTAIGPDRMLERGIRVK 540

Query: 535 YLGG---------EKPDFRGYKSSGFKSKNSQDGATKR 563
            L G         ++PDF   + +    +  +D   KR
Sbjct: 541 ALPGAPDVSRSRQDRPDFEKKRPAPASEREQKDFKPKR 578


>gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
 gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
          Length = 620

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 314/556 (56%), Positives = 402/556 (72%), Gaps = 11/556 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   + +AL +RGY  LT VQ+A+L  +L   D LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MSNFVGIVPALAQALEKRGYSELTPVQKAVL--ELGSADALVSAQTGSGKTVAFGLAMAP 58

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 59  TLLDGAERFGAAMAPLALAVAPTRELALQVTRELEWLYEPTGATVASCVGGMDMRTERRA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALNVAQADRENAIINVLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A +   W   PS + +  RD +RIL DP F + ++ DE+  +D LLAKH  E++AA F
Sbjct: 359 QNAGLKATWASPPSADDVIRRDDERILADPAFDEPVKDDERAFIDALLAKHGAEQVAAAF 418

Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  V+     R+R   +  A +    S RD+F  S WFSLSVG +Q 
Sbjct: 419 VRQCRASRSAPEDLIDVAPFTPSRERPAGEKFAQRDEAPSRRDDFGASVWFSLSVGRRQN 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ TFV+++AD  D     +  D+ +Q    +K
Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLAAIGPDRKLQGNILVK 538

Query: 535 YLGGEKPDFR--GYKS 548
            L G  PD    GY++
Sbjct: 539 RLDG-TPDLSRAGYQA 553


>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 729

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 305/542 (56%), Positives = 381/542 (70%), Gaps = 19/542 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I  AL++RGY  LT VQE++L P+LR+ D+LVSAQTGSGKTVAFG++LA TL+ E
Sbjct: 6   DIHSAIDRALTKRGYDALTPVQESMLAPELRDADLLVSAQTGSGKTVAFGISLAPTLMGE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR   A  PLA+ IAPTRELA+QV REL WLYA+ G  +A C+GG+++  ERR LQ GA
Sbjct: 66  EDRLPRAETPLAIVIAPTRELALQVERELAWLYAEAGAQIATCVGGMNMMTERRTLQRGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    LN++ ++AVVLDEADEMLDLGFRDD+EFILD++P +RR LMF
Sbjct: 126 HIVVGTPGRLRDHIERGSLNLTSIRAVVLDEADEMLDLGFRDDLEFILDAAPDQRRTLMF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK YQ  AVRV  A E +QH DI+YRA+ VA +DR+NA++N+LR++ AK
Sbjct: 186 SATVPSGIANLAKRYQTKAVRVTTAGEQKQHLDIEYRALSVAPNDRENAVINVLRFYDAK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVFCSTRA+V+  T   +   F VVALSGELSQ ERS+ALQ +RDGRA+VC+ATDVAA
Sbjct: 246 NAIVFCSTRATVNHLTARFSNRGFAVVALSGELSQNERSHALQALRDGRAKVCVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+DLPDLELVIHA+L  +PE LLHRSGRTGRAGRKG+S  ++P N +RR ERL  +A +
Sbjct: 306 RGLDLPDLELVIHADLPKSPETLLHRSGRTGRAGRKGVSAMIVPYNARRRTERLLSDARI 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           S  W   PS E I  RD +R+L DP F   I  DE  MV  LL +H PEK+AA  +R HR
Sbjct: 366 SAAWARPPSAEEILARDDERLLADPHFEAEIGEDEADMVKALLERHGPEKVAAALMRAHR 425

Query: 426 AGLCAPEEIT---PVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGSSWFSLSVGSKQKAE 480
           AG  APEE+    PV+   G    R            RD+   + + WFSLS+G KQ AE
Sbjct: 426 AGRSAPEELIENGPVTAPGGTYPER----------APRDHVALQNAVWFSLSLGRKQSAE 475

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
            RWL+PMLCR+  I +  IG+IR+    T VE+S D       ++    K++K I +  L
Sbjct: 476 PRWLLPMLCRAGHITKAEIGSIRILDLETHVEISGDSAAKFEASIGPSRKIEKNITVTRL 535

Query: 537 GG 538
            G
Sbjct: 536 EG 537


>gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
 gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
          Length = 673

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/547 (54%), Positives = 386/547 (70%), Gaps = 5/547 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  ++ I   I EAL +RGY  LT VQ+A+++ DL  +D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTDYDGIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A  PLAL IAPTRELA+QV RELEWLY  TG + A C+GG+ +  ERR 
Sbjct: 61  TLLGSENRFGRAVKPLALCIAPTRELALQVQRELEWLYENTGAIFATCVGGMDIRNERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHI+VGTPGRL DHI  + L++S L+AVV+DEADEMLDLGFR+D+EFIL  SP +R
Sbjct: 121 LERGAHIIVGTPGRLRDHITRRALDLSGLRAVVMDEADEMLDLGFREDLEFILKESPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQ+DA R+   SE +QH DI+YRA+L   +D++NAI+N LR
Sbjct: 181 RTLMFSATVPRSIADLARSYQRDAKRIETVSEQKQHIDIEYRAMLTVPADKENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGELSQ ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRANVNHLTARLHNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG KG+S  ++P + +R+AER+ 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPMSQRRKAERIL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             ANV   W   PS + +  RD +R+L DP+F ++I  +E   +  LL  H  +KI A +
Sbjct: 361 GGANVQAAWVKPPSADEVIARDDERLLADPVFSEAISEEEAATIARLLEAHGADKITAAY 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR +R+   APE++  V + + R R  +D+         R  F  S WFSLSVG +Q AE
Sbjct: 421 LRAYRSTRSAPEDLMEVKIQAERPRRENDTYEPNTPSRPRSEFGPSVWFSLSVGRRQSAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYL 536
            RWL+PMLCR+  I +  IGAI++QP+ TFVE++   ++     L     L++GI +K L
Sbjct: 481 PRWLIPMLCRNGNITKNEIGAIKMQPEETFVEIAQANLEQFLTALGPNKTLERGIIVKQL 540

Query: 537 GGEKPDF 543
            G  PDF
Sbjct: 541 PG-MPDF 546


>gi|260469782|ref|ZP_05813939.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028428|gb|EEW29747.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 620

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/555 (56%), Positives = 408/555 (73%), Gaps = 11/555 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE +   + +AL +RGY +LT VQ+A+L  +L + D LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MSNFEALVPALAKALEKRGYSDLTPVQKAVL--ELGQADALVSAQTGSGKTVAFGLAMAP 58

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   DRF+PA+APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 59  TLLDGADRFAPATAPLALAVAPTRELALQVTRELEWLYEMTGATVASCVGGMDMRTERRA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAPADRENAIINVLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A ++  W   PS + +  RD +RIL DP F + ++ DE+  +D LL++H  E++AA F
Sbjct: 359 QSAKLTATWASPPSADDVMRRDDERILADPAFDEPVKDDERAFIDALLSQHGAEQVAAAF 418

Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  V+     R+R   +  A +    S RD+F  S WFSLS+G +Q 
Sbjct: 419 VRQCRASRSAPEDLMDVAPFTPSRERPAGEGFARRDEAPSRRDDFGASVWFSLSIGRRQN 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ TFV+++AD  D     +  D+ +Q    +K
Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLTAIGPDRKLQGNIVVK 538

Query: 535 YLGGEKPDFR--GYK 547
            L G  PD    GY+
Sbjct: 539 RLDG-TPDLSRAGYQ 552


>gi|319780673|ref|YP_004140149.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 624

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 312/555 (56%), Positives = 404/555 (72%), Gaps = 9/555 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE +   +  AL +RGY  LT VQ+A++ P+L E D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MSNFEALVPALARALEKRGYSELTPVQKAVVAPELGEADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A+APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 61  TLLEGAERFGYAAAPLALAVAPTRELALQVTRELEWLYELTGATVASCVGGMDMRSERRV 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI  + L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRRSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA  DR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAQPDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 241 YYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + ++R ERL 
Sbjct: 301 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNSARKRTERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A +   W   PS + +  RD +RIL DP F + ++ DE+  +D LLA+H  E++AA F
Sbjct: 361 QNAGLKATWASPPSADDVMRRDDERILADPAFDEPVKEDERSFIDALLARHGAEQVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  ++     R+R   +  A +    S RD+F  S WFSLS+G +Q 
Sbjct: 421 VRQCRASRSAPEDLMEIAPFTPSRERPAGEGFARRDEAPSRRDDFGDSVWFSLSIGRRQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ T+V+++AD  D     +  D+ +Q    +K
Sbjct: 481 AEPRWLIPMLCRTGSISKREIGAIKMQPEETYVQIAADWADRFLAAIGPDRKLQGNILVK 540

Query: 535 YLGGEKPDFR--GYK 547
            L G  PD    GY+
Sbjct: 541 RLDG-TPDLSRAGYQ 554


>gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083]
 gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083]
          Length = 721

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/548 (54%), Positives = 388/548 (70%), Gaps = 14/548 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FEN+   + EAL  +GY  LT VQ  +  P+  ++D+LVSAQTGSGKTVAFGLA+A 
Sbjct: 12  MTDFENVIPTLNEALKAKGYETLTPVQVEVSQPEFLDQDLLVSAQTGSGKTVAFGLAIAP 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L EN RF  A+ PLAL IAPTRELA+QV RE +WL+A TGVVVA  +GG+    ERR 
Sbjct: 72  TILEENGRFERAATPLALVIAPTRELALQVKREFDWLFAPTGVVVASTVGGMDSRTERRA 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVV TPGRL DHI    +++S L+AVVLDEADEMLD+GF +D+E+ILD++P +R
Sbjct: 132 LERGAHIVVATPGRLRDHIMRGAIDLSALRAVVLDEADEMLDMGFSEDLEYILDATPSER 191

Query: 181 RMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R LMFSAT+   I  LA+ YQ KD  RV    E  QH+DI YRA+ VA SD +NAI+N L
Sbjct: 192 RTLMFSATVPRGIAKLAQKYQRKDTKRVETIGEGPQHADITYRAMTVAPSDTENAIINTL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           RY+ A+NAIVF +TRA V+R T   +   F VV+LSGELSQ ER++ALQ MRDGRARVC+
Sbjct: 252 RYYEAQNAIVFANTRAMVARLTARFSNRGFSVVSLSGELSQNERTHALQAMRDGRARVCV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGIDLP+LELVIHA+L SN E LLHRSGRTGRAGRKG+S  ++P   + +AERL
Sbjct: 312 ATDVAARGIDLPNLELVIHADLPSNGETLLHRSGRTGRAGRKGISALIVPGRQKSKAERL 371

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R A ++  W  APS + +  RD +R+L DP + +++  DE+     LL+++ PE+IAA 
Sbjct: 372 LRFAKLTAEWSNAPSADDVNARDEERMLNDPSWSEALSEDEQSFAGKLLSQYKPEQIAAA 431

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FLR+HR+   APE++  V+   G+   R + RA +       +F  SSWFSLS+G K KA
Sbjct: 432 FLRLHRSKHSAPEQLGEVTDTRGKREPR-EPRAPR-------DFGPSSWFSLSLGRKHKA 483

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKY 535
           E RWL+PMLCR+  I++  IGAIRVQ   TFVEV    V+ +++     + L++G +L  
Sbjct: 484 EPRWLLPMLCRNGNISKDDIGAIRVQYQETFVEVQTSAVERMKKELGEGLDLEQGAKLTE 543

Query: 536 LGGEKPDF 543
           L G KPDF
Sbjct: 544 LPG-KPDF 550


>gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
 gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
          Length = 680

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/539 (55%), Positives = 385/539 (71%), Gaps = 19/539 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + EALSERGY  LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLLA  +R
Sbjct: 3   HTLSEALSERGYETLTAVQEAVTDPALEQADLLVSAQTGSGKTVGFGLAIAPTLLAGEER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA+APLAL +APTRELA QV RELEWLYA+TG  V  C+GG+ +  ERR L+ GAHIV
Sbjct: 63  MGPAAAPLALIVAPTRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DHI+   L +  ++AVVLDEADEMLDLGFR+D+EF+L ++P+ RR LMFSAT
Sbjct: 123 VGTPGRLRDHIQRGSLELESIRAVVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLAK+YQ+DAVRV+  S  +QH+DI Y+AV VA  D +NAI+NILR+H A+NAI
Sbjct: 183 VPPMIATLAKHYQRDAVRVSTQSTGKQHADIAYQAVKVAQQDAENAIINILRFHDAENAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V+R T   +   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  V+P  M +RAERL + A +S  
Sbjct: 303 DLPNLDLVVHAELPTNVEGLLHRSGRTGRAGRKGISALVVPPKMVKRAERLLKWAKISAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS E I  RD +R+L DP++ + I  ++ +    L A H PE+IAA +LR++R   
Sbjct: 363 WITAPSAEDILARDEERLLADPVWSEEIAAEDAEFAARLAAAHAPERIAAAYLRLYRERH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++P                 K     R  F  S W +LSVG +Q+AE RWL+P+L
Sbjct: 423 SAPEELSPPDA--------------KPPAKERKPFGPSRWIALSVGREQRAEPRWLLPLL 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGGEKPDF 543
           CR+ G+++ +IGAIRV  D ++VE+S   V      +    +L+ GI+ + L G  PD+
Sbjct: 469 CRAGGLDKSAIGAIRVVKDESYVELSEPAVAGFFAEIGEAGQLEDGIRARLLEG-VPDY 526


>gi|114763012|ref|ZP_01442442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114544336|gb|EAU47344.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. HTCC2601]
          Length = 727

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/506 (57%), Positives = 365/506 (72%), Gaps = 11/506 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL+ERGY  LT VQEA+ NPDL+  D+LVSAQTGSGKTV FGLA+A TLL E   
Sbjct: 3   QTLSDALAERGYDTLTPVQEAVTNPDLQTSDLLVSAQTGSGKTVGFGLAIAPTLLDEAGM 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              AS PLAL +APTRELA QV RELEWLYAK G  V  C+GG+ +  ERR L+ GAHIV
Sbjct: 63  LGEASLPLALIVAPTRELAFQVKRELEWLYAKAGARVVSCVGGMDMRDERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DHI+    ++S L+A+VLDEADEMLDLGFR+D+EF+L  +P++RR L+FSAT
Sbjct: 123 VGTPGRLVDHIQRGSFDMSALRAIVLDEADEMLDLGFREDLEFMLGEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLA+ YQ+DAVRV   SE  QH+DI Y+A+ VA  D +NAI+N+LRYH A+NAI
Sbjct: 183 VPPMIATLAQLYQRDAVRVTTISERSQHADITYQALRVAQHDAENAIINMLRYHDAQNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA+V+R T   +   F VV LSGELSQ ERS+ALQ MRDGRA+VC+ATDVAARGI
Sbjct: 243 VFANTRATVNRLTARFSNRGFAVVCLSGELSQTERSHALQAMRDGRAKVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL SN E LLHRSGRTGRAGRKG+S  V+P  + ++AERL + A V+  
Sbjct: 303 DLPNLELVIHAELPSNTEGLLHRSGRTGRAGRKGISALVVPPKLTKKAERLLKWAKVTAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS E I  RD +R+L DP + + I  DE      LLA+  PE +AA +LR++R   
Sbjct: 363 WIEAPSAEEILRRDEERLLADPTWSEEITEDEAGFAARLLAEQSPETVAAAYLRLYRDRH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++             D+R  +     R  F  S W +LSVG   +AEARWL+P+L
Sbjct: 423 SAPEELS-----------APDARPERPERKERAAFGPSRWVALSVGRDDRAEARWLLPLL 471

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVS 514
           CR+ G+++ +IGAIRVQ   TFVE+S
Sbjct: 472 CRAGGLDKDAIGAIRVQDSETFVELS 497


>gi|126736373|ref|ZP_01752115.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
 gi|126714194|gb|EBA11063.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
          Length = 692

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 288/533 (54%), Positives = 374/533 (70%), Gaps = 13/533 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +AL+++GY +LT VQEA+ +  L  +D+LVSAQTGSGKTV FGLA+  T+LAE+  F
Sbjct: 4   TLADALAKQGYTDLTPVQEAVTDDALVGQDLLVSAQTGSGKTVGFGLAIGPTILAEDGTF 63

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA  P AL IAPTRELA+QV REL+WLYA  G  +A C+GG+    ERR L+ GAHIVV
Sbjct: 64  GPAGRPHALIIAPTRELALQVKRELQWLYAGAGATLASCVGGMDFRDERRSLERGAHIVV 123

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DHI    +++S +KAVVLDEADEMLDLGFR+D+EFIL  +P +RR LMFSAT+
Sbjct: 124 ATPGRLRDHIMRGTIDLSDIKAVVLDEADEMLDLGFREDLEFILGEAPPERRTLMFSATV 183

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I TLAK+YQ+DAVR+  A++ +QHSDI+YRA+ VA  D D AI+N+LRY+ A NAIV
Sbjct: 184 PPMIATLAKSYQRDAVRIATATKEKQHSDIEYRALSVANHDTDAAIINVLRYYDAPNAIV 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA V+R T  L+   F VVALSGEL+Q ERSNALQ MRDGRA+VC+ATDVAARGID
Sbjct: 244 FANTRAMVTRLTTRLSNRGFSVVALSGELTQSERSNALQAMRDGRAKVCVATDVAARGID 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+LELVIHAEL +N E LLHRSGRTGRAGRKG+S  ++P  M+RR E L +   ++  W
Sbjct: 304 LPNLELVIHAELPTNAETLLHRSGRTGRAGRKGISAMIVPAKMKRRGENLLKWGKLTATW 363

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ E ++ RD +R+L D ++      DE+     LL +HD EKIAA +LR++     
Sbjct: 364 ATPPTAEEVQARDEERLLTDEVWSADFTEDEQAFAKRLLDQHDAEKIAAAYLRLYAGKQS 423

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           APE I+          ++D   A +       +F  S WFS+ +G + KAEARWL+PM+C
Sbjct: 424 APEFIS---------EYKDGPAAKERKPREAKSFGPSKWFSIDIGREGKAEARWLLPMIC 474

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGG 538
           ++ GI +  IGAIR+QP+  F+E+SA  V    ++V    KL+    LK L G
Sbjct: 475 KAGGITKNEIGAIRIQPNEAFIEISAPAVPGFLKSVGSDMKLENQGTLKALDG 527


>gi|294676721|ref|YP_003577336.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
 gi|294475541|gb|ADE84929.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
          Length = 670

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 292/534 (54%), Positives = 367/534 (68%), Gaps = 12/534 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F ++P  + EALS RGY  LT VQ+A+  P+L  +D+LVSAQTGSGKTVAFGLA+++
Sbjct: 1   MTDFPHLPAALAEALSARGYDALTPVQDAVTRPELAGRDLLVSAQTGSGKTVAFGLAISA 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL EN        P AL +APTRELAVQV REL WLY K G V+   +GG+    ERR 
Sbjct: 61  ELLGENGISPYPDLPRALVVAPTRELAVQVSRELSWLYEKAGAVITGAVGGMDARAERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGR+CDHIR   L++S L AVVLDEADEMLD+GFR+D+EFIL+S+P+ R
Sbjct: 121 LERGAHIVVGTPGRICDHIRRGALDLSALSAVVLDEADEMLDMGFREDLEFILESAPEGR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LA+ +Q++A R++  S    H+DIDYR VLV  SDR+NAIVN+LR
Sbjct: 181 RTLMFSATVPREIERLAQTFQREAERISTVSSRESHADIDYRGVLVDRSDRENAIVNLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H A+ AIVFCSTRA+V+  T  L    F VVALSGEL+Q ERS ALQMMRDGRARVCIA
Sbjct: 241 LHEAERAIVFCSTRAAVTHLTGKLLNRGFSVVALSGELTQDERSRALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L  N E LLHRSGRTGRAGRKG+S  V+P N++ +AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPMNREGLLHRSGRTGRAGRKGLSAIVVPLNVRAKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REA VSV WE AP+ E I  RD +R+L +P   +    +E   +  LL  H+P+++AA  
Sbjct: 361 REAQVSVTWEGAPTPEDILARDQERLLTEPALTEPATAEEFDAIARLLETHEPKQLAAAV 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR  RA   APE++ PVS+  G        RA       R+ F  + W+ LS+G  Q  +
Sbjct: 421 LRHFRAARTAPEDVIPVSVGEG-----PKPRA-------REEFGAARWYRLSMGHDQWVD 468

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +WL+PMLCR+  + R+ IG IRV  D TFV++     D     +  D+ ++ K
Sbjct: 469 PKWLLPMLCRAGDLTRRDIGMIRVMQDQTFVQIHESMADRFEAGLGADRVMEGK 522


>gi|83944259|ref|ZP_00956714.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
 gi|83844803|gb|EAP82685.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
          Length = 731

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/562 (52%), Positives = 374/562 (66%), Gaps = 31/562 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++
Sbjct: 3   QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G VV  C+GG+    ERR L  GAHIV
Sbjct: 63  FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+S ++AVVLDEADEMLDLGFR+++EFIL  +P++RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S  ++P  M+ +A RL   A + V 
Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D    V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +       D R        R +F  S WFS+S+G    AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPA-------DER-------PRGDFGPSVWFSISIGRNDDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-------------KLDKGIQLKY 535
           CR   + +  +GAIRVQP  TFVE+ A   D     +             KLDK   L  
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFTNALGPDMKVEDGAVVTKLDKAPDLSR 528

Query: 536 LGGEKPDFRGYKSS--GFKSKN 555
             G KP  RG K +  G +S N
Sbjct: 529 --GPKPGGRGPKPNRGGPRSDN 548


>gi|304392954|ref|ZP_07374885.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
 gi|303294952|gb|EFL89321.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
          Length = 634

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 299/573 (52%), Positives = 389/573 (67%), Gaps = 15/573 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I + +  AL+ RGY  LT VQ+++ N +L   D+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MTEFTGIARPLARALAARGYETLTPVQQSVSNTELDGADLLVSAQTGSGKTVAFGIAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF PA  PLAL IAPTRELA+QV RELEWLYA  G V+  C+GG+ +  ERR 
Sbjct: 61  TLLDGEERFGPADKPLALVIAPTRELALQVCRELEWLYADAGAVITSCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIVVGTPGRL DHI  + ++   L+AVVLDEADEMLDLGF++D+EFIL+++P++R
Sbjct: 121 LERGVHIVVGTPGRLRDHISRRAMDCRQLQAVVLDEADEMLDLGFKEDLEFILEAAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR+   +E  QH+DI+YRA++VA  +R+NAIVN+LR
Sbjct: 181 RTLMFSATVPNAIAGLAKSYQRDAVRITTEAERDQHADIEYRALVVAPRERENAIVNVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+  +NA+VFC+TRASV+          F VVALSGELSQ ERS+ALQ +RDGRA+VCIA
Sbjct: 241 YYDPENALVFCNTRASVNHMVARFTNRGFSVVALSGELSQNERSHALQALRDGRAKVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L SNPE LLHRSGRTGRAGRKG+S  ++    + RAERL 
Sbjct: 301 TDVAARGIDLPKLELVIHADLPSNPETLLHRSGRTGRAGRKGISALMVDVKGRNRAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R A +   W   PS + +  RD +R+L  P   +  + DE+  +  LL +  PE+IAA +
Sbjct: 361 RFAKLDATWANPPSADDVYGRDEERMLASPALSEPPKADEQATIAKLLEQFSPEQIAAAY 420

Query: 421 LRIHRAGLCAPEEITPVSL-VSGRDRF-RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR  RA   APE+I  VS+    + ++ R + +        R +F+ S W SLSVG KQ 
Sbjct: 421 LRQVRADHSAPEDIEIVSVHQPNKPKYERSEGKQKTFEKKPRRDFENSVWVSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLK 534
           AE RWL+P++C + G+ +  IG+IR+QP  TFVE+ AD  D     L     L+K I++ 
Sbjct: 481 AEPRWLIPLICNAGGLTKSDIGSIRMQPAETFVELDADRADDFMNALGANATLEKNIRVT 540

Query: 535 YLGGEKPDF--------RGYKSSGFKSKNSQDG 559
            + G  PD         + Y+   FK   S DG
Sbjct: 541 PVDG-VPDIAPQKPFAKKPYEKKPFKKGRSADG 572


>gi|83953300|ref|ZP_00962022.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
 gi|83842268|gb|EAP81436.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
          Length = 731

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 293/562 (52%), Positives = 374/562 (66%), Gaps = 31/562 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++
Sbjct: 3   QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G VV  C+GG+    ERR L  GAHIV
Sbjct: 63  FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+S ++AVVLDEADEMLDLGFR+++EFIL  +P++RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S  ++P  M+ +A RL   A + V 
Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D    V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +       D R        R +F  S WFS+S+G    AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPA-------DER-------PRGDFGPSVWFSISIGRNDDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-------------KLDKGIQLKY 535
           CR   + +  +GAIRVQP  TFVE+ A   D     +             KLDK   L  
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFINALGPDMKVEDGAVVTKLDKAPDLSR 528

Query: 536 LGGEKPDFRGYKSS--GFKSKN 555
             G KP  RG K +  G +S N
Sbjct: 529 --GPKPGGRGPKPNRGGPRSDN 548


>gi|84516304|ref|ZP_01003664.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
 gi|84510000|gb|EAQ06457.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
          Length = 762

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/510 (55%), Positives = 360/510 (70%), Gaps = 5/510 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  ALS +GY +LT VQ A+ +  + ++D+LVSAQTGSGKTV FGLA+  T+L E+  F
Sbjct: 7   TLAAALSAQGYTDLTPVQVAVTDAAVADQDLLVSAQTGSGKTVGFGLAIGPTILPEDGLF 66

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA  PLAL IAPTRELA+QV REL+WLYA TG V+A C+GG+    E+R L+ GA IVV
Sbjct: 67  GPAGRPLALVIAPTRELALQVKRELQWLYAGTGAVLASCVGGMDFRDEKRSLERGAQIVV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DHI    +++S +KAV+LDEADEMLDLGFR+D+EFILD +P  RR LMFSAT+
Sbjct: 127 ATPGRLRDHIMRNTIDLSDIKAVILDEADEMLDLGFREDLEFILDQAPPSRRTLMFSATV 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  LA++YQK+AVRV   S+  QHSDI+YRA+ VA  D D AI+N+LR++ A NAIV
Sbjct: 187 PAAIAKLAQSYQKNAVRVASTSKESQHSDIEYRALTVANHDIDAAIINVLRFYDAPNAIV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA V+R T  LA   F  VALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID
Sbjct: 247 FANTRAMVTRLTTRLANRGFATVALSGELSQTERTHALQAMRDGRARVCVATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+LELVIHAEL +N E LLHRSGRTGRAGRKG+S  ++P  M+RRA+ L     +   W
Sbjct: 307 LPNLELVIHAELPTNAEILLHRSGRTGRAGRKGISAMIVPAKMKRRAQNLLTWGKLQATW 366

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ + +  +D  R+L DP++ ++    E++    LLA+H PEKIAA +LR++     
Sbjct: 367 ALPPTADEVTAKDEDRLLTDPVWSETFTDSEQEFAARLLAQHAPEKIAAAYLRLYAGKQS 426

Query: 430 APEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
           APEE++      +  DR  D  R  +       +F  S WF + VG   KAEARWL+PM+
Sbjct: 427 APEELSDYKDGPAAPDRKGDPDRPPR----DHKSFGPSRWFRVDVGRDGKAEARWLLPMI 482

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           C++ GI +  IGAIR+QPD TFVE+S   V
Sbjct: 483 CKAGGITKTEIGAIRIQPDETFVEISEPAV 512


>gi|163797256|ref|ZP_02191210.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
 gi|159177551|gb|EDP62105.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
          Length = 575

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/516 (53%), Positives = 368/516 (71%), Gaps = 12/516 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FEN    +  AL+ +GY   T VQ ++L P++   D+LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MNAFENAHPALAGALAAQGYETPTPVQASVLAPEVSSADLLVSAQTGSGKTVAFGLAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL E +RF  A  PLAL +APTRELA+QV REL+WLYA TG   A C+GG+ + RER  
Sbjct: 61  TLLEEAERFGRAEEPLALVVAPTRELALQVRRELDWLYAPTGARTASCVGGMDMRRERDV 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+V+GTPGRL DHI    L++S ++AVVLDEADEMLDLGFR+D+E+ILD++P  R
Sbjct: 121 LSSGAHLVIGTPGRLRDHIERGSLDLSKIRAVVLDEADEMLDLGFREDLEYILDAAPSDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK YQ++AVR+  A E  QH DI+YRA LVA +DRDNAIVN L 
Sbjct: 181 RTLMFSATVPSTIAHLAKRYQRNAVRLATAGERTQHHDIEYRAHLVAPNDRDNAIVNTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +H A++A+VFC TR +V   +  LA   F VVALSGELSQ ER++ALQ +RDGRARVC+A
Sbjct: 241 FHDARSAMVFCGTRIAVQHLSSRLANRGFSVVALSGELSQNERTHALQAIRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LV+HA++ +N + LLHRSGRTGRAGRKG+SV ++P   +   +RL 
Sbjct: 301 TDVAARGIDLPTLDLVVHADVPNNSDTLLHRSGRTGRAGRKGVSVLIVPHTRRHTVQRLL 360

Query: 361 REA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           + A N+   W   P+ EAI +RD +R++QDP+  + +  +E +    LLA HDPEK+AA 
Sbjct: 361 KSANNLRAAWMAPPNAEAIAKRDRERMMQDPVLSEDVTPEELEFARELLATHDPEKVAAA 420

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           +LR+H+A   APEE+  V+  S     +           +RD+F GS WF +S G K +A
Sbjct: 421 YLRLHQASRPAPEELLDVASASSEPPRK-----------ARDDFAGSVWFKVSAGRKHQA 469

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           EARWL+P++CR+  + +  +GAIR+ P+ + VE++A
Sbjct: 470 EARWLLPLICRAGHVTKNEVGAIRILPNESHVEITA 505


>gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 719

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/560 (50%), Positives = 387/560 (69%), Gaps = 25/560 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ ++I EAL+ERGY  LT VQEA+ +PDL  +D+LVSAQTGSGKTV FGLA+A TLL E
Sbjct: 20  NMTRLINEALAERGYDTLTPVQEAVSDPDLAGRDLLVSAQTGSGKTVGFGLAIAPTLLGE 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++ F PA  PLAL +APTRELA+QV REL WL+ KTG  +A C+GG+ +  ERR L+ GA
Sbjct: 80  DEEFGPAGLPLALVVAPTRELAMQVKRELIWLFGKTGARLASCVGGMDMRDERRALERGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI+   L++S L+A+VLDEADEMLDLGFR+D+EF+L+ +P++RR+L+F
Sbjct: 140 HIVVGTPGRLRDHIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFMLEEAPEERRILLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA+ YQ DA RVN  +   QH+DI Y+A+ VA +D +NAI N+LR+H ++
Sbjct: 200 SATVPPTIAKLAEQYQNDAARVNTITGATQHADIAYQAIRVAQTDTENAIFNLLRFHDSE 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVF +TRA V+  T  L+     VV+LSGELSQ ER++ALQ MRDGRA+VC+ATDVAA
Sbjct: 260 NAIVFANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGIDLP+L+LVIHA+L  N E+L HRSGRTGRAGRKG+S  ++P    ++ ERL   A  
Sbjct: 320 RGIDLPNLDLVIHADLPKNTESLTHRSGRTGRAGRKGISALIVPPRDVKKTERLLGWAKT 379

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           +  W  APS + I  +D +R+L DP++ + +   +    + +LA++  E +AA +LR+ +
Sbjct: 380 TAEWTTAPSADDIHAKDEERLLADPVWTEPVTEAQAAFAEKVLAQYGAEAVAAAYLRLFQ 439

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           +   APE++ P      R                R  F  S WF+LSVG  +KAEARWL+
Sbjct: 440 SRQGAPEDLLPPDTKPERK--------------ERKPFGPSKWFALSVGQAEKAEARWLL 485

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGG--- 538
           P++ R+SG+++  IGAIRVQ   T++E+   SADG +  L    +LD+GI+++ L     
Sbjct: 486 PLIMRASGVDKADIGAIRVQGAETYLELTEKSADGFLSSLGADGELDEGIKVRALDAAPE 545

Query: 539 ----EKPDFRGYKSSGFKSK 554
                KP+ R  K  G   K
Sbjct: 546 LGPRPKPERRDGKPGGRDGK 565


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/554 (51%), Positives = 368/554 (66%), Gaps = 30/554 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+E+GY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+A TLL + +R
Sbjct: 3   KTLSDALAEQGYDTLTPVQEAVTAPELAQADLLVSAQTGSGKTVGFGLAIAPTLLDDQER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL IAPTRELA QV REL WLYAK G VV  C+GG+    ERR L  GAH+V
Sbjct: 63  FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   + +++L+AVVLDEADEMLDLGFRD++EFILD +PK RR LMFSAT
Sbjct: 123 VATPGRLCDHIKRGNIELANLRAVVLDEADEMLDLGFRDELEFILDEAPKDRRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA++YQ+DA R+   SENRQH+DI+YRA+     D +NAI+N+LR++ AKNAI
Sbjct: 183 VPKAIAKLAESYQRDAQRIATVSENRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A +   
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRSKANRLLGSAKLKAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W+  PS   +  +D  R+L DPL+  ++  D +++V  L       ++A   +  ++A  
Sbjct: 363 WDEPPSAAEVNAQDTTRLLSDPLWTATVGEDSEELVAQLAQDFTATQLAQAVVSFYQAQR 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+T        D    D R        R  F  S WFS+SVG    AE R L+PM+
Sbjct: 423 SAPEELT--------DAGTPDDR-------PRKTFGPSVWFSVSVGRDTGAEPRTLLPMI 467

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL-------- 536
           C    + +  IGAIR++ D +FVEV A   D L   V     L+ GI L  L        
Sbjct: 468 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAAVGPDMTLEAGIVLTRLAQAPDLGQ 527

Query: 537 ---GGEKPDFRGYK 547
              GG KP  + Y+
Sbjct: 528 DRPGGGKPGAKPYR 541


>gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
 gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
          Length = 717

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/552 (51%), Positives = 367/552 (66%), Gaps = 29/552 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+++GY +LT VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL E++ 
Sbjct: 3   QTIADALAKQGYDSLTPVQEAVTDPALADADLLVSAQTGSGKTVGFGLAIAPTLLGESET 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY   G VV  C+GG+    ERR L  GAH+V
Sbjct: 63  FGHAGAPLALVIAPTRELAMQVSRELTWLYGPAGAVVTTCVGGMDTRTERRALDRGAHVV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N++ ++AVVLDEADEMLDLGFR+++EFIL  +P+ RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLNDIRAVVLDEADEMLDLGFREELEFILSEAPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ++A RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRNAQRVETIGEAKQHTDIEYRALTVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGELSQ ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A + V 
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D K  V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAKGFVANLVDQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +                  R +F  S WFS+SVG  Q AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPADEK--------------PRGDFGPSVWFSISVGRNQDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---------SADGVDLLRR----TVKLDKGIQLKY 535
           CR   + +  +GAIRVQP  TFVE+         +A G D+         KLDK   L  
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSAAKFTNALGPDMKVEDGAIVTKLDKAPDLSR 528

Query: 536 LGGEKPDFRGYK 547
             G KP  RG K
Sbjct: 529 --GPKPGGRGPK 538


>gi|254438889|ref|ZP_05052383.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
 gi|198254335|gb|EDY78649.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
          Length = 702

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/588 (48%), Positives = 379/588 (64%), Gaps = 46/588 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +A+  RGY  LT VQEA  +P L  +D+LVSAQTGSGKT+ FG+A+A +LL + +R
Sbjct: 3   QALADAIKARGYDTLTPVQEACSDPALEGRDLLVSAQTGSGKTLGFGIAIAQSLLGDAER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV RELEWLY KTG V+A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K +++S LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ LMFSAT
Sbjct: 123 VSTPGRLRDHIMRKSIDLSSLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  +I  LA+ YQ+DA RV   +  +QH+DI+YRA  V+  D +NAI+N+LRY  A NAI
Sbjct: 183 VPASIAKLAQRYQRDAERVATTTGEKQHADIEYRAFCVSARDTENAIINVLRYFEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQSERTHALQSMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S  ++P  ++++AERL   A ++  
Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  +D +R+L+D  +   +    + MV  +  +  PE++AA +LR++R   
Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVDESAQAMVATMAERFAPEQLAAAYLRLYREKH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+  V   +                  R  F  S WFSL  G    AE R ++PM+
Sbjct: 423 TAPEELADVGEPAK----------------PRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-------------------- 528
           C+   I +  IGAIR+QPD++++EV    V  L   +  D                    
Sbjct: 467 CKMGNITKDDIGAIRIQPDMSYIEVREASVKTLTAALGTDMTLENGAPLTRIANPPSFER 526

Query: 529 ----KGIQLKYLG---GEKPDFRGYKSSGFKSKNSQD---GATKRFKR 566
               K  + +Y G   G KPD++      +KSK+  D    A K F++
Sbjct: 527 GPARKDAKPRYDGPNSGGKPDYKNKDKPAYKSKDKSDYKPAAEKSFEK 574


>gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 699

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 289/547 (52%), Positives = 366/547 (66%), Gaps = 20/547 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+++GY  LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL ++  
Sbjct: 3   QTIADALAQQGYETLTAVQEAVTDPALNDADLLVSAQTGSGKTVGFGLAIAPTLLGDDTH 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G +V  C+GG+    ERR L  GAHIV
Sbjct: 63  FGQAGAPLALIIAPTRELAMQVSRELTWLYGKAGAIVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+  ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA R+    E +QHSDI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRITTVGEAKQHSDIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A + V 
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS   +   D  R+L D  + D I  D +  V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WAAPPSAAEVNAADEARLLADSAWSDPIPEDAEGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+       G D+              R  F  S WFS+S G    AE R L+PML
Sbjct: 423 SAPEELAEPG-APGDDK-------------PRPAFGKSVWFSISTGRNDGAEPRTLLPML 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGGEKPDF- 543
           CR   + +  IGAIRVQ   +FVEV   S  G +  L   +KL++G  L  L  + PD  
Sbjct: 469 CRRGDLTKDDIGAIRVQGSHSFVEVLETSVPGLLSALGGDMKLEEGAVLTQL-DKAPDLA 527

Query: 544 RGYKSSG 550
           RG K +G
Sbjct: 528 RGPKPAG 534


>gi|254450953|ref|ZP_05064390.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
 gi|198265359|gb|EDY89629.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
          Length = 706

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/596 (47%), Positives = 378/596 (63%), Gaps = 54/596 (9%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +A+  RGY  LT VQEA  +P L  +D+LVSAQTGSGKT+ FG+A+A  LL + +R
Sbjct: 3   QALADAIEARGYDTLTPVQEACGDPALEGRDLLVSAQTGSGKTLGFGIAIAPNLLGDAER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV RELEWLY KTG V+A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K +++S+LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ L+FSAT
Sbjct: 123 VSTPGRLRDHIMRKSIDLSNLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  +I  LA+ YQ++A RV   +  +QH+DI+YRA  V+  D +NAI+N+LRY  A NAI
Sbjct: 183 VPASIAKLAQRYQRNAERVATTTGEKQHADIEYRAFRVSARDTENAIINVLRYFEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQTERTHALQSMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S  ++P  ++++AERL   A ++  
Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  +D +R+L+D  +   ++     MV  +  +  PE++AA +LR++R   
Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVEESATAMVATMAERFAPEQLAAAYLRLYREKH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++ V   +                  R  F  S WFSL  G    AE R ++PM+
Sbjct: 423 TAPEELSDVGEPA----------------KPRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-------------------- 528
           C+   I +  IGAIR+QPD +++EV    V  L   +  D                    
Sbjct: 467 CKMGNITKDDIGAIRIQPDTSYIEVREASVKTLTAALGSDMTLENGAPLTRVANPPSFER 526

Query: 529 ---------------KGIQLKYLGGEKPDFRGYKSSGFKSKNSQD---GATKRFKR 566
                           G +  Y  G+KPD++      +K+K+  D    A K F++
Sbjct: 527 GPARKESKPRYDGPKSGGKPDYKSGDKPDYKNKDKPAYKAKDKSDFKPAAEKPFEK 582


>gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
 gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
          Length = 736

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/509 (53%), Positives = 359/509 (70%), Gaps = 16/509 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  + +AL+ERGY  LT VQEA+  P+   +D+LVSAQTGSGKTV FGLA+A TLL E 
Sbjct: 2   IP-ALTDALTERGYATLTPVQEAVTAPEAFGRDLLVSAQTGSGKTVGFGLAIAPTLLGEE 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F PA  PLAL +APTRELA QV +EL WLY KTG +V  C+GG+ V +ERR L+ G H
Sbjct: 61  QAFGPAGTPLALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLERGTH 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRLCDHIR   L++S ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR L+FS
Sbjct: 121 IVVGTPGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFILQTAPAERRTLLFS 180

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP I  +A+ +QKDA R+N  ++ +QH+DI Y+A+ VA +D D+AI N+LR+H  ++
Sbjct: 181 ATVSPVIGRIAEEFQKDAFRINTINKAQQHADIAYKALRVAQADSDHAIFNLLRFHDDES 240

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +TRA V+  T  L      VV+LSGELSQQER++ALQ MRDGRARVC+ATDVAAR
Sbjct: 241 AIVFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVAAR 300

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDLP+L LVIHA+L +N E+LLHRSGRTGRAG+KG+S  ++P    ++AERL + A ++
Sbjct: 301 GIDLPNLSLVIHADLPTNTESLLHRSGRTGRAGKKGISALIVPPKSVKKAERLLKWAKIT 360

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
             W   PS E I  RD +++L DP +   +  D+ +    LL  H PE +AA  +R+H +
Sbjct: 361 AEWAVPPSAEDISARDEEKLLTDPSWQMGVPEDQAEFAARLLEAHGPEAVAAALVRMHLS 420

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
              APE++      + RD                  F  S WF+LSVG   +AEARWL+P
Sbjct: 421 RHSAPEDLQSPDAPARRD---------------TKGFGPSRWFALSVGRNDRAEARWLLP 465

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           ++ R++ + + +IGAIRVQ   T+VE++A
Sbjct: 466 LILRATDLEKDAIGAIRVQDTETYVEIAA 494


>gi|260429679|ref|ZP_05783655.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
 gi|260419162|gb|EEX12416.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
          Length = 772

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/509 (56%), Positives = 369/509 (72%), Gaps = 14/509 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +ALSERGY  LT VQEA++ P+L   D+LVSAQTGSGKTV FGLA+A TLL +  RF 
Sbjct: 5   LSDALSERGYDTLTPVQEAVIAPELAGLDLLVSAQTGSGKTVGFGLAIAPTLLGDETRFG 64

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA+APLAL +APTRELA QV REL WL+A+TG VVA C+GG+ V +ERR L+ GAHIVVG
Sbjct: 65  PAAAPLALVVAPTRELAFQVMRELTWLFARTGAVVASCVGGMDVRQERRALERGAHIVVG 124

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  + L++S ++AVVLDEADEMLDLGFR+D+EF+L  +P+ RR L+FSAT+ 
Sbjct: 125 TPGRLRDHIERESLDLSAIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVP 184

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I TLAK+YQ+DA RVN      QH+DI Y+A+ VA SD ++AI N+LR+H  ++AIVF
Sbjct: 185 PMIATLAKSYQRDARRVNTVDSASQHADISYQAIRVAQSDVEHAIFNLLRFHDDESAIVF 244

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TRA+VSR T  LA      V+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGIDL
Sbjct: 245 ANTRAAVSRLTARLANRGLATVSLSGELSQTERSHALQAMRDGRARVCVATDVAARGIDL 304

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+L LVIHA+L +N E LLHRSGRTGRAGRKG+S  ++P  + ++AERL + A +S  W 
Sbjct: 305 PNLNLVIHADLPTNTETLLHRSGRTGRAGRKGISALIVPSKVAKKAERLLKWAKISAEWT 364

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
            APSV+ I+ +D +R+L DP++ + +  ++    + LLA H PE IAA +LR+++A   A
Sbjct: 365 VAPSVDDIQRKDEERLLADPVWSEPLTEEQGAFAEKLLALHQPEVIAAAYLRLYQARHAA 424

Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
            EE+ P          RD              F  S W +LSVG   +AEARWL+P+LCR
Sbjct: 425 AEELLPPDTKPAAREPRD--------------FGPSRWVTLSVGRDNRAEARWLLPLLCR 470

Query: 491 SSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +  +++ SIGAIRVQ   TFVE++   V+
Sbjct: 471 AGNLDKSSIGAIRVQDSETFVELAEPSVE 499


>gi|159043402|ref|YP_001532196.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911162|gb|ABV92595.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 730

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 290/542 (53%), Positives = 370/542 (68%), Gaps = 21/542 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY  LT VQ A+ +P L E D+LVSAQTGSGKTVAFGLA+A TLLA+   F PA+APL
Sbjct: 14  DKGYDTLTPVQIAVSDPALVEADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAPL 73

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L IAPTRELA+QV RELEWLY   G  +  C+GG+    ERR L  GAH+VV TPGRL 
Sbjct: 74  GLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGRGAHVVVATPGRLR 133

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    +++  ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+ PAI +L
Sbjct: 134 DHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTLMFSATVPPAIASL 193

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+ YQKDA R++  +E RQH+DI YRA++V   D +NAI+N+LRY+ A NAIVFC+TRA 
Sbjct: 194 AQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYYEAANAIVFCNTRAM 253

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V+R T   +   FQVVALSGEL+Q ER++ALQ MRDGRA+VC+ATDVAARGIDLP+LELV
Sbjct: 254 VNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVATDVAARGIDLPNLELV 313

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           +HAEL S+ + LLHRSGRTGRAGRKG+S  ++P   +++AERL + A V+  W   PS E
Sbjct: 314 VHAELPSSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKKAERLLKWAKVTPDWVSPPSAE 373

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
            +R +DA R+L+DP +   +   E +MV  L+    PE++AA  LR   A   APEEI+ 
Sbjct: 374 DVRAQDAARLLEDPAWETPVAEGEAEMVARLVEAFSPEQLAAAVLRAGSAQRSAPEEIS- 432

Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496
                          A  +    R  F  S+WF+LSVG   +AE RW++PMLCR  G +R
Sbjct: 433 ---------------AGDMTPTPRVPFGPSAWFTLSVGRASRAEPRWILPMLCRVGGFDR 477

Query: 497 QSIGAIRVQPDLTFVEVSADGV-DLLR---RTVKLDKGIQLKYLGGEKPDFRGYKSSGFK 552
             IGAIR+Q D TFVE+    V D L+    ++ L+ G  L  L  E PD      SG  
Sbjct: 478 DEIGAIRIQQDETFVEIKEAAVPDTLQGSEASITLEDGAVLSRL-AEAPDLSQRDGSGPA 536

Query: 553 SK 554
            K
Sbjct: 537 RK 538


>gi|255261566|ref|ZP_05340908.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
 gi|255103901|gb|EET46575.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
          Length = 736

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/533 (53%), Positives = 367/533 (68%), Gaps = 18/533 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I  AL  +GY  LT VQ  +  P+L  +D+LVSAQTGSGKTV FGLA+A  +L E+  F
Sbjct: 16  TIAAALEAQGYSTLTPVQTEVSKPELIGRDMLVSAQTGSGKTVGFGLAIAPVILEEDGNF 75

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A++PLAL IAPTRELA+QV RELEWLY   GV+V   +GG+   +ERR L+ G HIVV
Sbjct: 76  ERAASPLALCIAPTRELAMQVKRELEWLYRPAGVIVTSAVGGMDARQERRSLERGTHIVV 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DHI    L++S +++VVLDEADEMLDLGFR+D+E+IL  +P++R+ L+FSAT+
Sbjct: 136 ATPGRLRDHIMRGSLDMSAIRSVVLDEADEMLDLGFREDLEYILGEAPEERQTLLFSATV 195

Query: 190 SPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              I  LAK YQKD AVRV+  +E  QH+DI+YRA+ VA +D +NAI+N+LRY+ A NA+
Sbjct: 196 PRGIVGLAKAYQKDDAVRVSTVAEREQHADIEYRALRVAGNDPENAIINVLRYYEAANAL 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T   A   FQVVALSGEL+Q ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 256 VFCNTRAVVNRLTSRFANRGFQVVALSGELTQAERTHALQAMRDGRARVCVATDVAARGI 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP LELV+HAEL SN E LLHRSGRTGRAGRKG+S  ++PQ   ++AERL   A V   
Sbjct: 316 DLPKLELVVHAELPSNAETLLHRSGRTGRAGRKGVSALIVPQRWSKKAERLLGWAKVKAE 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W+  PS + +  RD +R+L D ++      DE      L   + PE+IAA +LR++RA  
Sbjct: 376 WDVPPSADDVLRRDEERLLADDVWKAETTKDEAVFATKLTEMYSPEQIAASYLRLYRARQ 435

Query: 429 CAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            APE++  P S  + R+R              R  F  S WF + +G K KAEARW++PM
Sbjct: 436 SAPEDLADPGSAPASRER------------KERAPFGPSKWFRVGIGRKDKAEARWILPM 483

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTVKLDKGIQLKYL 536
           LCR+  I++  IGAIRVQ   TFVE+   SA G    L   ++L+KG+++  L
Sbjct: 484 LCRAGDISKDDIGAIRVQDAETFVELKETSAPGFKSALGDAMELEKGVEVTEL 536


>gi|119387071|ref|YP_918126.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377666|gb|ABL72430.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 687

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/522 (52%), Positives = 361/522 (69%), Gaps = 14/522 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LTSVQEA L P+ R +DVLVSAQTGSGKTVAFGLA+A  +L + +    A  PLA
Sbjct: 27  KGYASLTSVQEAALAPEARGRDVLVSAQTGSGKTVAFGLAMAGDIL-DGETLPEAGQPLA 85

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L+ GAHIVVGTPGRL D
Sbjct: 86  LAIAPTRELALQVARELGWLYEQAGARIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 145

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L+++ L+A VLDEADEMLDLGFR+D+EFIL S+P +RR L+FSAT+ PAI  LA
Sbjct: 146 HIERGSLDLTALRACVLDEADEMLDLGFREDLEFILGSAPAERRTLLFSATVPPAIEALA 205

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +++Q+DA+R+    E RQH DI+YRA+ V   DR++AI N LRY+ A  AI+FC TRA+V
Sbjct: 206 RDFQRDALRIQAMGEARQHGDIEYRAMSVTTRDREHAIFNTLRYYEASRAIIFCKTRANV 265

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    F+VVALSGELSQQERS+ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 266 NHLLARMGNRGFKVVALSGELSQQERSHALQALRDGRARVCIATDVAARGIDLPGLELVI 325

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +NP+ LLHRSGRTGRAG KG SV ++P +  +RA+RL + A +   W  APS + 
Sbjct: 326 HADLPTNPDTLLHRSGRTGRAGAKGTSVLIVPSSEYKRAQRLLQRAKLVAEWGKAPSADE 385

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ RD  R+L  P   ++  GDE  +   LL +   E++A+ F+R+ R G  APEE++  
Sbjct: 386 VQARDDARMLDHPALAEA-PGDEAGLAAALLDRFGAERVASAFVRLWREGRPAPEELS-- 442

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                     + +         R  F  + WF LSVG   +AEARWL+P +C + GI R 
Sbjct: 443 ----------ESAAPAPSAPRERGEFGPAVWFLLSVGHSGRAEARWLLPKICEAGGITRD 492

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           +IGAIRV+ D TFV+++A         ++L+ G+ ++ + GE
Sbjct: 493 AIGAIRVKTDQTFVQIAAPVAPNFGERIELEPGLTMRRIEGE 534


>gi|126727015|ref|ZP_01742853.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703687|gb|EBA02782.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 700

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 280/559 (50%), Positives = 380/559 (67%), Gaps = 8/559 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+ RGY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+ S++L ++  
Sbjct: 3   KTLADALAARGYETLTQVQEAVTKPELADADLLVSAQTGSGKTVGFGLAIGSSILEDDGS 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F+ A  PLAL IAPTRELA+QV REL+WLY KTG  V  C+GG+ +  ERR L  GAHIV
Sbjct: 63  FAQADKPLALVIAPTRELALQVKRELDWLYGKTGAKVVSCVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +N++ L+AVVLDEADEMLDLGFR+D+EFIL  +P++RR LMFSAT
Sbjct: 123 VATPGRLRDHIMRNSMNMTELRAVVLDEADEMLDLGFREDLEFILGEAPEERRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA++YQ DAVRV   +E++QHSDI+YRA++V+  D +NAIVN+LRY+ A NA+
Sbjct: 183 VPKQIARLAQSYQNDAVRVTTVAESKQHSDIEYRAMVVSARDVENAIVNVLRYYEAPNAL 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T   +   F VVALSGEL+Q ER++ALQ MRDGRAR+CIATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTTRFSNRGFSVVALSGELTQNERTHALQAMRDGRARICIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP LELVIH +L +N E LLHRSGRTGRAGRKG+S  ++P + + +A RL   A V+  
Sbjct: 303 DLPGLELVIHGDLPTNSETLLHRSGRTGRAGRKGVSALIVPSSQRSKANRLLGGAKVTAD 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD +RIL DP +L++ +    + ++ L+A +  E+IA  ++++     
Sbjct: 363 WGDAPSADEVFARDKERILADPSWLEAAEPRHVETIEALVATYSAEQIATAYMKLFAVRQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++         R        + G   R+ F  S+WFS+  G +  AE R L+PML
Sbjct: 423 SAPEEVSAAG--PSGGRDGGRGDKGRSGAHPREEFGPSTWFSIEGGHEAGAEPRRLLPML 480

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           C++  + ++ +GAIRV+ + +FVEV  D     V  L  ++K++ G ++  L  + PD  
Sbjct: 481 CKAGNLTKEDLGAIRVRDNQSFVEVRKDSAAGFVKALGNSMKIE-GSKVTAL-DKAPDLG 538

Query: 545 GYKSSGFKSKNSQDGATKR 563
           G  S G   + S  G   R
Sbjct: 539 GPSSRGPARRGSSGGKFDR 557


>gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
 gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
          Length = 759

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/532 (52%), Positives = 371/532 (69%), Gaps = 20/532 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  AL+ RGY  LT VQEA+ +P L   D+LVSAQTGSGKTV FGLA+A TLL   DR 
Sbjct: 5   ALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGGEDRL 64

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA+APLAL +APTRELA+QV REL WLYA+ G  +  C+GG+    ERR L+ GAHIVV
Sbjct: 65  PPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGAHIVV 124

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRLCDHI    L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P+ RR LMFSAT+
Sbjct: 125 GTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSATV 184

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA+ +Q+DA RV   +  +QH+DI Y+A+ V+  D + A++N+LRYH A+NAIV
Sbjct: 185 PPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQNAIV 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA V+R T  L+   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID
Sbjct: 245 FANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAARGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  ++P     +AERL + A ++  W
Sbjct: 305 LPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKITAEW 364

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ E I  +D +R+L DP++ ++    E      LLA H PE IAA +LR++++   
Sbjct: 365 TTPPTPEDIEAKDRERLLSDPVWSETPSETEGAFAAELLALHSPEVIAAAYLRLYKSRWS 424

Query: 430 APEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
           APEE++ P +    R+               R  F  S WF+LSVG+  +AEARWL+P+L
Sbjct: 425 APEELSAPGAPAPARE---------------RSAFGPSRWFALSVGNDDRAEARWLLPLL 469

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
           CR+  +++ +IGAIRVQ   TFVE++   V     ++    +LD+GI  + L
Sbjct: 470 CRAGNLDKSAIGAIRVQAAETFVELAEAAVPGFLSSLGEGGQLDEGITARAL 521


>gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh
           114]
 gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter
           denitrificans OCh 114]
          Length = 705

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/539 (52%), Positives = 361/539 (66%), Gaps = 20/539 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+E+GY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+A TLL E + 
Sbjct: 11  KTLSDALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAIAPTLLGEQEH 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL IAPTRELA QV REL WLYAK G VV  C+GG+    ERR L  GAH+V
Sbjct: 71  FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   + +S L+AVVLDEADEMLDLGFR+++EFILD +P  RR L+FSAT
Sbjct: 131 VATPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPTDRRTLLFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA++YQ+DA R+   SE RQH+DI+YRA+     D +NAI+N+LR++ AKNAI
Sbjct: 191 VPKAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI
Sbjct: 251 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A +   
Sbjct: 311 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRTKANRLLGWAKLKAE 370

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS   +  +D  R+L DPL+  ++  + +++V  L       ++A   +  ++A  
Sbjct: 371 WGTPPSAAEVNAQDTARLLSDPLWNATVSEEAEELVAQLAQDFSATQLAQAVVSFYQAQR 430

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+T        D    D R        R  F  S WFS+SVG    AE R L+PM+
Sbjct: 431 SAPEELT--------DPTTPDDR-------PRKTFGPSVWFSVSVGRDAGAEPRTLLPMI 475

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV---SADG-VDLLRRTVKLDKGIQLKYLGGEKPDF 543
           C    + +  IGAIR++ D +FVEV    ADG V  L   + L+ G+ L  L  + PD 
Sbjct: 476 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAALGSDMTLEAGVVLTRL-AQAPDL 533


>gi|56698644|ref|YP_169021.1| DEAD-box ATP dependent DNA helicase [Ruegeria pomeroyi DSS-3]
 gi|56680381|gb|AAV97047.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Ruegeria pomeroyi
           DSS-3]
          Length = 709

 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/506 (53%), Positives = 356/506 (70%), Gaps = 14/506 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ERG+  LT VQ+A+ +P+L   D+LVSA+TGSGKTV FGLA+A TLL E +   P 
Sbjct: 34  DALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLGEAETLGPP 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +APLAL +APTRELA+QV REL WL+AK G  +A CIGG+    ERR L+ GAHIVVGTP
Sbjct: 94  AAPLALIVAPTRELALQVSRELTWLFAKAGGRIATCIGGMDARTERRTLERGAHIVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    L+++ ++AVVLDEADEMLDLGFR+D+EF+L  +P+ RR L+FSAT+SPA
Sbjct: 154 GRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATVSPA 213

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK YQ+ A R++     RQHSDI Y+AV V+  D ++AI+N+LR+H A  AIVF +
Sbjct: 214 IAELAKTYQRQAARISTLGGERQHSDISYQAVQVSGGDGEHAIINLLRFHDAPTAIVFAN 273

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA+V+R T  LA   F VV+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGIDLP+
Sbjct: 274 TRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVCVATDVAARGIDLPN 333

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+LVIHA+L +N E LLHRSGRTGRAGRKG+S  ++P  + ++A RL + A +   W  A
Sbjct: 334 LDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISKKASRLLKWAKIEAEWTQA 393

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           P+ E I  +D  R+L DPL+ D ++ +E ++   L+ +   ++IA   LR++RA L APE
Sbjct: 394 PTPEDILAKDEARLLADPLWTDPVEDEETRIAAGLMEQFTAQQIAVACLRLYRAKLTAPE 453

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
           E+            +  +R       S   F  S W SLSVG +Q+AE RWL+P+LCR+ 
Sbjct: 454 ELN-----------QPPARGAPSVAAS---FGPSRWISLSVGREQRAEPRWLLPLLCRAG 499

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGV 518
            + +  IG I +Q   T VE++   V
Sbjct: 500 NLEKSQIGKITMQAQETHVELAEAAV 525


>gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score =  541 bits (1395), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/608 (48%), Positives = 395/608 (64%), Gaps = 55/608 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E I   +  AL+ RGY  LT+VQ A+L P+  + D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPETIAPALSGALAARGYNTLTAVQNAVLAPETLDADLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L    RFS A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEGELRFSDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S L+AVVLDEADEMLD+GFR+D+EFIL  +PK R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPKDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q DA+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + + ++  L  ++ PE+IAA F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQDLLKALTERYTPEQIAAAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSG---RDRFRDDSRAFKVGGGSR--------------- 460
           L    A   A EE++  PV  V G   RDRF    R+ +   G R               
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDR---GDRFERGERRERGEPGER 477

Query: 461 ----DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                +F G  WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A 
Sbjct: 478 FDRNASFDG-VWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITAS 536

Query: 517 GVDLLRRTVKL----DKGIQLKYL--------------GGEKP--------DFR-GYKSS 549
             D  RR+V+     +KG+ ++                GG KP         FR GYKS 
Sbjct: 537 KADEFRRSVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKSKEGGFRDGYKSD 596

Query: 550 GFKSKNSQ 557
           G+K   S+
Sbjct: 597 GYKGDRSK 604


>gi|254473911|ref|ZP_05087305.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
 gi|211957021|gb|EEA92227.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
          Length = 607

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 272/526 (51%), Positives = 359/526 (68%), Gaps = 13/526 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M I E +   +  AL +R Y +LT VQ A+L+ +L+ KD+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MTIPEGVSPALSTALEKREYTSLTPVQTAVLDEELKGKDLLVSAQTGSGKTVAFGIAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL + +R   A+ PLAL +APTRELA+QV +ELEWLY + G  +  C+GG+ + RERR+
Sbjct: 61  ELLGDEERMGRANEPLALCVAPTRELAIQVSKELEWLYGEAGARITTCVGGMDMRRERRN 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRL DHI     + S L+ VVLDEADEMLDLGFR+D+EFILD++P++R
Sbjct: 121 LSAGAHIVVGTPGRLRDHIERGSFDTSALRTVVLDEADEMLDLGFREDLEFILDAAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+ P I +LAK +Q+DA R++  +   QH+DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 181 RTLLFSATVPPQIESLAKRFQRDAQRISTVTNREQHADIEYRAMQVAPNDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+N I+FC TR  V   +  L    F VVALSGELSQ ER++AL  MR+GRARVC+A
Sbjct: 241 FYEAQNTIIFCGTREMVKHLSARLGNRGFAVVALSGELSQAERNHALGAMRNGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +N E LLHRSGRTGRAGRKG+   V+P   +R A RL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNAETLLHRSGRTGRAGRKGVCTLVVPHTRRRSATRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A V   W PAP+ + IR++D +RIL      ++   ++  MV  LL K  PE+IAA +
Sbjct: 361 GFAKVKAEWGPAPTAQQIRDKDRERILASTDLQEAPSEEDLPMVQELLEKFTPEQIAAAY 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +R    GL APEE+   S       F D  R        R +F    WF L+VG K  AE
Sbjct: 421 MRQIHQGLPAPEELLASS-------FEDRERK------PRKDFDNGVWFRLNVGRKHNAE 467

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            RWL+PM+CR+  I ++ IG+IR+    +  E+ A   D  + TVK
Sbjct: 468 PRWLLPMICRAGHITKKDIGSIRIFDADSRFELDAKLADKFQETVK 513


>gi|86747306|ref|YP_483802.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86570334|gb|ABD04891.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 679

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 290/590 (49%), Positives = 376/590 (63%), Gaps = 29/590 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL+ER Y   T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FSTTLPPLARALAERHYSEATPVQSAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIAPDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E +RF PA+APLAL +APTRELA+QV REL WLY  TG  V  C+GG+   RE+R+L  
Sbjct: 63  GEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGATGARVVSCVGGMDPRREQRELAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPDSRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ +A RV +A     H+DI+YRA+ +A +D ++A+VN LRY  
Sbjct: 183 LFSATLPRGIIALAKTYQHNAFRVEVAGREGGHADIEYRAIRIAPNDVEHAVVNTLRYVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC+TR+ V+     L E  F VVALSGEL+Q ER+NAL  +RDGRARVC+ATDV
Sbjct: 243 SPTAIVFCATRSGVTHLQTALLERGFSVVALSGELTQNERTNALNALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L   A
Sbjct: 303 AARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGISVLLVPPARRRRAESLLGLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +W  AP  + IR  D QR++QD LF +    D++ +   LLA+   E+IA    R+
Sbjct: 363 GIEAIWGTAPQADEIRVLDQQRMMQDALFTEETTPDDQALAQALLAERSAEEIAVALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDD----------------------SRAFKVGGGSRD 461
           +RA L APE+I        R   RDD                      SRA     G + 
Sbjct: 423 YRARLPAPEDILDPGERPARG--RDDRAPAKGARAPREERDYGPRDPGSRARPGKAGQKH 480

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                 WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E++A      
Sbjct: 481 AITDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAAAAVDF 540

Query: 522 RRTVKL---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKR 566
              +K    D  I+++ L G KP   G + +  K    Q  +  T+R KR
Sbjct: 541 AAQIKRPDKDDNIRIEPLIGAKPIEAGAERALSKPHGGQLSERETRRSKR 590


>gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99036711|gb|ABF63323.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 710

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/547 (51%), Positives = 375/547 (68%), Gaps = 19/547 (3%)

Query: 4   FENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +E  P +I    +AL  RGY +LT VQEA+ NP+L   D+LVSAQTGSGKTV FGLA+A 
Sbjct: 3   YERTPHLIPTLQQALERRGYTSLTPVQEAVSNPELAGADLLVSAQTGSGKTVGFGLAIAP 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L E+  F  A++PLAL IAPTRELA+QV REL WLY   G V+A C+GG+ +  ERR 
Sbjct: 63  TILGEDGTFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVV TPGRL DHI    +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R
Sbjct: 123 LERGAHIVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  I  LA+ YQ DA R++  +++ QHSDI Y A +VA  D +NAI+N+LR
Sbjct: 183 QTLLFSATVSKPIAALAQTYQNDAQRISTINKSEQHSDISYLAHVVAPHDIENAIINVLR 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +H A NAIVF +TRA+V+R    L+   FQVVALSGELSQ ER+ ALQ MRDGRAR+C+A
Sbjct: 243 FHEAPNAIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S  ++     R+AERL 
Sbjct: 303 TDVAARGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLL 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REA +S  W  APS + +R RD +R+L D ++ +     +++ +  L+    PE++AAG+
Sbjct: 363 REAKLSAEWIDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGY 422

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR+  A   APEE+T V+ +  R +  D           R  F  S WF++  G    A+
Sbjct: 423 LRLWSAARSAPEELTDVAAMDTRKKKED-----------RAPFGPSVWFAIDGGRDAGAD 471

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYL 536
            R L+PMLC++ GI++ +IGAIR+  D ++ E++ D V+    T    + LD G  L+ L
Sbjct: 472 PRRLLPMLCKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGEMALDDGSALERL 531

Query: 537 GGEKPDF 543
             E P+ 
Sbjct: 532 -SEAPNL 537


>gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
          Length = 641

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/594 (48%), Positives = 391/594 (65%), Gaps = 35/594 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E I   +  AL+ RGY  LT+VQ A+L  +  + D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPETIAPALSGALAARGYNTLTAVQNAVLASETLDADLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S L+AVVLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPENR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q DA+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F  S++ + + ++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQGKTNERILNAEVFNQSVEEEYQDLLKALTERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSG---RDRF-------RDDSRAFKVGGGSRDNFKGSS- 467
           L    A   A EE++  PV  V G   RDRF       R D    +  G   + F  ++ 
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDRGDRFERRDRGEPGERFDRNAQ 480

Query: 468 ----WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
               WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  RR
Sbjct: 481 FDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITASKADEFRR 540

Query: 524 TVKL----DKGIQLKYL--------------GGEKPDFRGYKSSGFKSKNSQDG 559
           +V+     +KG+ ++                GG KP    +K  GF+     DG
Sbjct: 541 SVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKFKEGGFRDGYKSDG 594


>gi|260574445|ref|ZP_05842449.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023341|gb|EEW26633.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 829

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/522 (52%), Positives = 363/522 (69%), Gaps = 14/522 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY  LT VQ+A+L+ D+  +D+LVSAQTGSGKTVAFG+A+A  LL   DR   A  P+A
Sbjct: 17  KGYETLTPVQDAVLSGDVTGRDLLVSAQTGSGKTVAFGIAIADELLRGADRLLFADTPMA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L IAPTRELA+QV REL+WLYA+TG ++A C+GG+    E+R L  GAHIVVGTPGRL D
Sbjct: 77  LIIAPTRELALQVARELDWLYAETGAIIATCVGGMDYRTEKRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  + L++S L+A VLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+  AI  LA
Sbjct: 137 HIERRSLDLSGLRAAVLDEADEMLDLGFREDLEFILQAAPAERRTLMFSATVPKAIAELA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K++Q +A+R+  A E RQH DI+YRA+ V+  DR++AI N+LR++ A++AIVFC TR +V
Sbjct: 197 KDFQNNALRLQTAGEARQHVDIEYRALNVSTRDREHAIFNLLRFYEARSAIVFCKTRVAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP L+LVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQSLRDGRARVCIATDVAARGIDLPGLDLVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L SN E LLHRSGRTGRAG KG+S  ++     R+A+RL + A V   W  APS + 
Sbjct: 317 HADLPSNSEVLLHRSGRTGRAGSKGVSALIVTPAEFRKAQRLLQGAKVVAEWAKAPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ RD  R+L+ P+ + +  G+E ++   LL +   E++A+ F+R+ R G  APEE+   
Sbjct: 377 VQMRDDARVLEHPVLM-APAGNEAEIAATLLERFGAEQVASAFVRLWREGRSAPEELQ-- 433

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                      D+ A       R  F  S WF+LSVG   +AEARWL+P +C   GI + 
Sbjct: 434 -----------DANAAPSAARERTEFGESVWFALSVGRSGRAEARWLLPKICDGGGITKN 482

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
            IGAIRVQ D TFV+++         + +L+ G+ ++ + GE
Sbjct: 483 EIGAIRVQEDETFVQIAKPVASRFGASFELESGVVMRRMEGE 524


>gi|118589362|ref|ZP_01546768.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
 gi|118438062|gb|EAV44697.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
          Length = 697

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/533 (52%), Positives = 375/533 (70%), Gaps = 13/533 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RGY NLTSVQE++L+    E D+LVSAQTGSGKTVAFGLALA TLL   D    A AP+A
Sbjct: 18  RGYENLTSVQESVLSDAPPEADLLVSAQTGSGKTVAFGLALAPTLLDGKDTLGQAGAPIA 77

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV  EL WLY + G V A C+GG+    ERR L+ G HIVVGTPGRL D
Sbjct: 78  LAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRMERRTLERGVHIVVGTPGRLRD 137

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S +KAVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+   I  LA
Sbjct: 138 HIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDAAPQDRRTLMFSATVPRQIAELA 197

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +QKDAVR++  +   QH DIDY A  VA ++R+NAI+N+LR H A+ AIVFCSTR +V
Sbjct: 198 KRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLRQHEAEKAIVFCSTREAV 257

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           SR T  LA   F +V+LSGELSQ++RS+AL  M+DGRARVC+ATDVAARGIDLP+L+LVI
Sbjct: 258 SRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVATDVAARGIDLPNLDLVI 317

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +    LLHRSGRTGRAGRKG  V ++P   +R+AER+ + A ++  W+ AP+ + 
Sbjct: 318 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERVLQFAGITATWKGAPTADD 377

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           IR +D +R+L DP     ++ +E  + + LLA H PE++AA F+++ ++ L APEE++ V
Sbjct: 378 IRAKDKERLLADPALKVELEEEELAIANELLALHSPEQLAAAFVKLRQSRLPAPEEVSDV 437

Query: 438 SLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
              S  GRD      R  ++ G     F+   WFSLS+G +Q+AE RW++PM+CR+  + 
Sbjct: 438 DETSLRGRDAGSRGGRTAEITG----KFEDGIWFSLSLGHRQRAEPRWILPMICRAGHVT 493

Query: 496 RQSIGAIRV-QPDLTFVEVSADG---VDLLRRTVKLDKGIQLKYL---GGEKP 541
           ++ +GAI++ Q +L F    + G    D+++R    ++   +K L   GG+ P
Sbjct: 494 KKEVGAIKIFQNELYFEIAGSHGQRFADVVKREGTGEENATIKLLDARGGKIP 546


>gi|312115353|ref|YP_004012949.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220482|gb|ADP71850.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 570

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 279/571 (48%), Positives = 378/571 (66%), Gaps = 22/571 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            + +P +  EAL+++GY  LT VQ A+L  D+ E D+LVSAQTGSGKTVAFGLA+ASTLL
Sbjct: 3   IDGVPPLFAEALAKQGYTTLTDVQRAVLEEDVGESDLLVSAQTGSGKTVAFGLAMASTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              DRF   S PLA+ +APTRELA+QV  ELEWLYA  G  +A C+GG+ + +ERR L  
Sbjct: 63  RGEDRFPANSEPLAVLVAPTRELALQVRLELEWLYAPAGARIASCVGGMDMRQERRSLAG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DHI    L+++ ++A+VLDEADEMLDLGFR+D+EFIL ++P +RR L
Sbjct: 123 GAHIVVGTPGRLRDHITRGSLDMASVRAMVLDEADEMLDLGFREDLEFILKAAPPERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT++  I TLA+ +QK+A+R++  +   QH++IDYRAV VA  +R+NA++N+LR+  
Sbjct: 183 MFSATVAKPIETLARRFQKNAIRISANTGATQHANIDYRAVAVASGERENAVINVLRFFE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A +A VFC+TR  V      L    F VVALSGELSQ ER+  LQ MRDGRA+VC+ATDV
Sbjct: 243 ASSAFVFCTTREGVKHLASRLGNRGFGVVALSGELSQTERTRGLQAMRDGRAQVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGIDLP L+LVIHA+L  + E LLHRSGRTGRAGR G+SV + P + +R  ++L + A
Sbjct: 303 ASRGIDLPTLDLVIHADLPKDGEALLHRSGRTGRAGRSGVSVLITPHSKRRTVDKLLQAA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V V W P PS E I +RD +R++ DP     +  +E      LLA   PE+IAA F R 
Sbjct: 363 KVKVSWMPVPSAETIIQRDRERLMNDPSLEGPLTDEEADFARDLLATKSPEQIAAAFFRQ 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           ++     PEE     + SGRD    ++         R +F+G  WF +SVG KQ+AE RW
Sbjct: 423 NQTRRPTPEEF----VDSGRDASEVEA--------PRGDFEGGVWFRVSVGRKQRAEPRW 470

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGE 539
           ++P++C++  +  + IGAI++    +  EVSA    D    L +T + D  I +  + G 
Sbjct: 471 ILPLICKAGDVTSREIGAIQILEGESMFEVSARAAPDFTRALAQTGRRDDTITIVPMNG- 529

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
           +P+ R   +   +S     GA KR ++  GA
Sbjct: 530 RPEPRASYADSPRS-----GAMKRSRKMPGA 555


>gi|89054065|ref|YP_509516.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863614|gb|ABD54491.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 706

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/511 (53%), Positives = 355/511 (69%), Gaps = 16/511 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL  +GY  LT VQ+A+ +PDL  KD+LVSAQTGSGKT+ FGLA+A  L  E + 
Sbjct: 3   QALQTALDAQGYDTLTPVQQAVTDPDLTGKDLLVSAQTGSGKTLGFGLAIAPQLFGEAEA 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WL+A+ G  +A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FGAAGAPLALVIAPTRELAMQVKRELSWLFAQAGATLASTVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S LKAVVLDEADEMLDLGFR+D+EFILD+SP  R+ LMFSAT
Sbjct: 123 VATPGRLKDHIMRGSIDLSSLKAVVLDEADEMLDLGFREDLEFILDTSPADRQTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA+NYQKDAVRV   +  +QHSDI+YRA+ V+  D +NAI+N+LR++ A NAI
Sbjct: 183 VPAAIARLAQNYQKDAVRVATTTGEKQHSDIEYRALTVSARDGENAIINVLRFYEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGEL+Q ER+NALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S  ++P   +++A+RL   A ++ V
Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKLTAV 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD  R+++D  +   +Q   ++ VD L+ K+  E++A+ F+R++R   
Sbjct: 363 WAEAPSADEVTARDDARMMEDADWDAEVQDSNREAVDKLVDKYSAEQLASAFVRMYREKR 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++  S                     R  F  S WFSL+ G    AE R L+PML
Sbjct: 423 SAPEELSDAS----------------AAPEPRKAFGPSVWFSLAGGQAVGAEPRRLLPML 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           C+   I R  +GAIR+  + +F+E+    VD
Sbjct: 467 CKMGNITRDDVGAIRIHHEASFIELRESAVD 497


>gi|259418800|ref|ZP_05742717.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
 gi|259345022|gb|EEW56876.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
          Length = 681

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 276/541 (51%), Positives = 374/541 (69%), Gaps = 17/541 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  + +AL  RGY +LT VQEA+ +P+L   D+LVSAQTGSGKTV FGLA+A T+L E+
Sbjct: 2   IP-TLQQALERRGYTSLTPVQEAVSDPELAGADLLVSAQTGSGKTVGFGLAIAPTILNED 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F  A++PLAL IAPTRELA+QV REL WLY   G V+A C+GG+ +  ERR L+ GAH
Sbjct: 61  GQFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAH 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DHI    +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R+ L+FS
Sbjct: 121 IVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFS 180

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  LA+ YQ DA R++  +++ QHSDI Y + +VA  D +NAI+N+LR+H A N
Sbjct: 181 ATVSKPIAALAQTYQNDAQRISTINKSEQHSDISYFSHVVAPHDIENAIINVLRFHEAPN 240

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +TRA+V+R    L+   FQVVALSGELSQ ER+ ALQ MRDGRAR+C+ATDVAAR
Sbjct: 241 AIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAAR 300

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S  ++     R+AERL R+A +S
Sbjct: 301 GIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLRDAKLS 360

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
             W  APS + +R RD +R+L D ++ +     +++ +  L+    PE++AAG+LR+  A
Sbjct: 361 AEWVDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGYLRLWSA 420

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
              APEE+T V+ +  R +  D           R  F  S WF++  G    A+ R L+P
Sbjct: 421 ARSAPEELTDVAAMDTRKKKED-----------RAPFGPSVWFAIEGGRDAGADPRRLLP 469

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPD 542
           MLC++ GI++ +IGAIR+  D ++ E++ D V+    T    + LD G  L+ L  E P+
Sbjct: 470 MLCKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGDMALDDGSALERL-NEAPN 528

Query: 543 F 543
            
Sbjct: 529 L 529


>gi|91977685|ref|YP_570344.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684141|gb|ABE40443.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 691

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 288/594 (48%), Positives = 380/594 (63%), Gaps = 37/594 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y+  T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FLTTPPPLARALAERNYLEATPVQSAVLAPEAAGRDLLVSAQTGSGKTVAYGLAIARDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +++RFS A+APLAL +APTRELA+QV REL W+Y   G  V  C+GG+   RE+R+L  
Sbjct: 63  GDSERFSSAAAPLALIVAPTRELALQVHRELGWVYGYAGARVVSCVGGMDPRREQRELAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPATRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ DA R+ +      H+DI+YRA+ +A SD ++A+VN LR+  
Sbjct: 183 LFSATLPRGIIALAKTYQHDAFRIEVEGREGGHADIEYRAMRIAPSDVEHAVVNTLRFVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + +AIVFC+TR +V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDV
Sbjct: 243 SPSAIVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTQALNSLRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L   A
Sbjct: 303 AARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +W  AP  + IR  D QR+ QD LF D I  +++ +  VLLA+   E+IA    R+
Sbjct: 363 GIEAIWGTAPQADEIRVLDQQRMTQDTLFTDEISPEDQALAQVLLAERTAEEIAIALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG---------GSRDN------------ 462
           +RA L +PE+I      + R R   D RA   G          G RD+            
Sbjct: 423 YRARLPSPEDILDPGQANARGR---DDRASPKGARAPREERDYGPRDSGPRARSAKAGQK 479

Query: 463 --FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E++A   + 
Sbjct: 480 HAMTDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAFAAED 539

Query: 521 LRRTVK---LDKGIQLKYLGGEKP-----DFRGYKSSGFKSKNSQDGATKRFKR 566
               +K    D  I+++ L G KP     D   YK    K    +   T+R KR
Sbjct: 540 FAAQIKRPDKDDNIRIEPLIGAKPIEPAADKPAYKPHDGKKSERE---TRRSKR 590


>gi|304320267|ref|YP_003853910.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
 gi|303299169|gb|ADM08768.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/562 (49%), Positives = 367/562 (65%), Gaps = 19/562 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+ +GY +LT VQ A+L+  +  +D+LVSAQTGSGKTVAFGLA+   L+  
Sbjct: 9   GLPAPLSRALTAKGYDSLTEVQSAMLDEGVSGRDLLVSAQTGSGKTVAFGLAMGPDLMRG 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      PLAL +APTRELA+QV RE+ WLYA+TG  VA C+GG+ + RER+ L  GA
Sbjct: 69  QARLPRGGVPLALVVAPTRELAMQVAREITWLYAETGATVATCVGGMDLRRERQALDRGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    L++S L+  +LDEADEML LGFR ++E ILD+  + RR LMF
Sbjct: 129 HIVVGTPGRLVDHISRDALDLSALRVAILDEADEMLKLGFRQELEAILDACAEDRRTLMF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA  YQ+DA+R++ +   R H DI Y+A++ +  D + AI+N LR+H A+
Sbjct: 189 SATVGGGIGKLAAQYQRDALRISASGPARSHDDIAYKAMVTSQHDAEKAIINTLRFHEAE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVFC TRA+V+R T  LA   F VV+LSGELSQQER+NALQ MRDGRARVC+ATDVAA
Sbjct: 249 NAIVFCGTRAAVARLTSRLANRGFSVVSLSGELSQQERTNALQAMRDGRARVCVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGIDLP LELVIHA+L  + E LLHRSGRTGRAGRKG SV V+P   +RR E+LFR+A V
Sbjct: 309 RGIDLPGLELVIHADLPKDREGLLHRSGRTGRAGRKGTSVLVVPPRARRRVEQLFRDAKV 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
              W   PS EA+  RD  R+L DP+  +   G+   +   L   +  E +A  F+R+HR
Sbjct: 369 DADWIAPPSAEAVLARDDARLLSDPILNEG--GEADSLAQTLAEAYSAEHLAGAFIRLHR 426

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
               APEEI+ +++V             K G   R      +W  LSVG   +AE RWL+
Sbjct: 427 QNRSAPEEISELAVV---------PPGVKKG---RTETTDGAWVMLSVGRAHRAEPRWLL 474

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           PMLC+S+ + + SIGAIRV+   T+V++    +AD ++ L     L+ GI+++   G  P
Sbjct: 475 PMLCKSAPVPKGSIGAIRVRETETYVQLDKEGAADFLNSLGTVGYLEDGIEVRRTDG-PP 533

Query: 542 DFRGYKSSGFKSKNSQDGATKR 563
           D  G + +       + G T+R
Sbjct: 534 DKEGPREAAVPVTRPRKGRTQR 555


>gi|254464595|ref|ZP_05078006.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
 gi|206685503|gb|EDZ45985.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
          Length = 678

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/539 (51%), Positives = 363/539 (67%), Gaps = 16/539 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL ERGY  LT VQEA+  PD+  +D+LVSAQTGSGKTV FGLALA  LL E++ 
Sbjct: 3   QALANALQERGYETLTQVQEAVTQPDVEGRDLLVSAQTGSGKTVGFGLALAQDLLGEDES 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A+APLAL IAPTRELA+QV  EL WLY + G V+A C+GG+ +  ERR L  GAHIV
Sbjct: 63  FGEAAAPLALVIAPTRELALQVKHELSWLYREAGAVIASCVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
             TPGRL DHI    +++S ++ VVLDEADEMLDLGFR+D+EFIL  +P+ RR L+FSAT
Sbjct: 123 AATPGRLRDHIARGSIDLSQVRGVVLDEADEMLDLGFREDLEFILGEAPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI +LA+ +Q+DA+R+  A E +QH+DI+YR + VA +D +NAI+N+LRY+ A +AI
Sbjct: 183 VPPAIASLAEAFQRDAMRIKTAGETKQHADIEYRLMNVAQADAENAIINVLRYYEAPSAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA+V+R    L+     VV LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFANTRAAVNRLAARLSNRGLPVVTLSGELSQTERSHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP LELV+HAEL SN E LLHRSGRTGRAGRKG+S  + P   + +A RL + A ++  
Sbjct: 303 DLPGLELVVHAELPSNHETLLHRSGRTGRAGRKGVSALIAPPKARAKALRLLKWAKLTAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
              APS + +  RD +R+L DP++   ++ +E+  V  LL     E+IAA +LR+ R+  
Sbjct: 363 HCEAPSADDVLARDEERMLADPVWQQPVEENEQAGVRTLLDNFSAEQIAATYLRLFRSRH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++ P                 +     R  F  S WFSLS G +  A+ R ++PML
Sbjct: 423 SAPEDLRPAGEEE-----------PRKERKERKAFGPSVWFSLSGGHEAGADPRKVLPML 471

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGGEKPDF 543
           C++  I+R +IGAIRVQ + TF E+S   VD     L    +L+ G  L  L  E PD 
Sbjct: 472 CKAGNIDRDAIGAIRVQDNETFAEISEGAVDGFLKALDGKTELEPGAVLTRL-SEAPDL 529


>gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 626

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 385/592 (65%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F+  ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFIQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|254504723|ref|ZP_05116874.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
 gi|222440794|gb|EEE47473.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
          Length = 722

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/533 (50%), Positives = 369/533 (69%), Gaps = 13/533 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RGY  LT VQE++L       D+LVSAQTGSGKTVAFGLALAST+L E +      AP+A
Sbjct: 41  RGYETLTPVQESVLTEAPANADLLVSAQTGSGKTVAFGLALASTILGEEETLGKPGAPIA 100

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV  EL WLY + G V A C+GG+    ERR L  G HIVVGTPGRL D
Sbjct: 101 LAIAPTRELALQVKEELTWLYGEAGAVTASCVGGMDPRMERRTLDRGVHIVVGTPGRLRD 160

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+   I  LA
Sbjct: 161 HIERGALDLSELRAVVLDEADEMLDMGFREDLEFILDAAPENRRTLMFSATVPKPIAELA 220

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +QKDAVR++  +   QH DIDY A  VA ++R+NAI+N+LR H A+ AIVFC TR  V
Sbjct: 221 KRFQKDAVRLSTINAREQHVDIDYIAHPVAPNERENAIINVLRLHEAEKAIVFCQTREGV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           SR T  LA   F++V+LSGELSQ++R+ AL  M++G ARVC+ATDVAARGIDLP+L+LVI
Sbjct: 281 SRLTARLANRGFRIVSLSGELSQEQRTAALTAMKNGTARVCVATDVAARGIDLPNLDLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +    LLHRSGRTGRAGRKG  V ++P   +R+AER    AN++  W+ AP+ + 
Sbjct: 341 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERTLHFANITATWKGAPTSDE 400

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           IR +D +R+L DP+    ++ +E+ +   LLA H  E++AA F+++ ++ L APEE+  +
Sbjct: 401 IRAKDKERLLADPVLSAELEEEERVIAGELLALHSAEQLAAAFVKLRQSRLPAPEEVGEL 460

Query: 438 --SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
             + + GRD      R+ ++    ++NF+   WFSLS+G +Q+AE RW++P++CR+  + 
Sbjct: 461 NETALQGRDAGSRGGRSAEI----KNNFEDGVWFSLSLGHRQRAEPRWILPLICRAGHVT 516

Query: 496 RQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DKGIQLKYL---GGEKP 541
           ++ +GAI++  +  + E+S    +    TVK     ++ + +K L   GG+ P
Sbjct: 517 KKEVGAIKIFQNELYFEISGKHGEKFASTVKREGTGEENVTIKLLDARGGQMP 569


>gi|149913402|ref|ZP_01901935.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
 gi|149812522|gb|EDM72351.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
          Length = 662

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 270/510 (52%), Positives = 351/510 (68%), Gaps = 16/510 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL  +GY +LT+VQEA+  P+L  KD+LVSAQTGSGKT+ FGLA+A  L  E + 
Sbjct: 3   QALANALKAQGYTSLTAVQEAVSAPELAGKDLLVSAQTGSGKTLGFGLAIAPGLFGEAES 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA+APLAL IAPTRELA+QV REL WL+ +   V+A  +GG+ +  ERR L+ GAHIV
Sbjct: 63  FGPAAAPLALVIAPTRELALQVKRELAWLFGQANAVLASTVGGMDMRDERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S LKAVVLDEADEMLDLGFR+D+EFIL+ +P +R+ L+FSAT
Sbjct: 123 VATPGRLRDHIMRGSIDLSALKAVVLDEADEMLDLGFREDLEFILEQAPIERQTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA NYQKDA+R++ AS   QH+DI+YRA+ V+  D +NAI+N+LRY+ A NAI
Sbjct: 183 VPAAIAKLASNYQKDAIRISTASGTTQHADIEYRALNVSARDAENAIINVLRYYEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTTRLSNRSFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S  ++P   +++A+RL   A V   
Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKVKAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD +R+L    +   I+   +  V  L  +   E++AA F+R+ R   
Sbjct: 363 WADAPSADEVTARDDERMLAGTEWDAEIEDSNRATVAKLTERFSAEQLAAAFVRLFRERH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++ VS                     R  F  S WFS+  G    AE R L+PML
Sbjct: 423 SAPEELSDVSAPP----------------EPRAAFGPSVWFSVEGGRAAGAEPRRLLPML 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           C+   ++R+ IGAIR+Q D++ VE+    V
Sbjct: 467 CKIGALSREDIGAIRIQNDVSLVEIRQSAV 496


>gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28]
          Length = 626

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/592 (46%), Positives = 386/592 (65%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQD 558
             ++G   K L         GG+          KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC
           23457]
 gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC
           23457]
 gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
          Length = 626

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 278/592 (46%), Positives = 386/592 (65%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQD 558
             ++G   K L         GG+          KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKTD 591


>gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 626

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 S-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513]
 gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 626

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVYPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 626

 Score =  529 bits (1362), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6
           str. 870]
 gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9
           str. C68]
 gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
 gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
          Length = 626

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 626

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent
           helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-termin [Brucella melitensis biovar Abortus 2308]
 gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 626

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+Q  RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQARRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|328544847|ref|YP_004304956.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
 gi|326414589|gb|ADZ71652.1| DEAD/DEAH box helicase domain-containing protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 673

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 291/564 (51%), Positives = 384/564 (68%), Gaps = 21/564 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           +RGY +LT VQE IL     E D+LVSAQTGSGKTVAFGLALA TLL + DR   A APL
Sbjct: 17  KRGYTSLTPVQETILAQAPAEADLLVSAQTGSGKTVAFGLALAPTLLGDADRLGAAGAPL 76

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           ALAIAPTRELA+QV  EL WLY + G   A C+GG+    ERR L+ G HIVVGTPGRL 
Sbjct: 77  ALAIAPTRELALQVKAELTWLYEEAGAQTASCVGGMDPRSERRALERGTHIVVGTPGRLR 136

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    L++S L+AVVLDEADEMLDLGFR+D+EFILD++P+ RR LMFSAT+   I  L
Sbjct: 137 DHIERGALDLSQLRAVVLDEADEMLDLGFREDLEFILDAAPEDRRTLMFSATVPKPIADL 196

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+ +QKDAVR++  S   QH DIDY A  VA ++R+NAI+N+LR++ A  AIVFCSTR +
Sbjct: 197 ARRFQKDAVRLSTISAREQHGDIDYFAHPVAPNERENAIINVLRFYEADKAIVFCSTREA 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R T  LA   F V ALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGIDLP+L+LV
Sbjct: 257 VRRLTSRLANRGFSVAALSGELSQNERTHALQAMRDGRARVCVATDVAARGIDLPNLDLV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           IHA+L +    LLHRSGRTGRAGRKG SV ++P   +R AERL   A+V   W  AP+  
Sbjct: 317 IHADLPTGKAGLLHRSGRTGRAGRKGSSVLIVPFPRRRAAERLLLSADVKAAWSDAPAAA 376

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
           AIR++D  R+L DP+  +  + ++  +   LL++H PE+IAA F+R+H++GL APE++T 
Sbjct: 377 AIRDKDKARLLADPVLTEPAEEEDLALARELLSEHGPERIAAAFVRLHQSGLPAPEDLTE 436

Query: 437 VSLVSGRDRFRDD--------SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
                 R R R +        SRAF+V    R+ F+   WF LS+G K KA+ RWL+PM+
Sbjct: 437 GGADDIRGRSRGERAPFESGPSRAFEV----RNKFEDGIWFRLSLGHKHKADPRWLLPMI 492

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           CR+  + ++ +GAI++    T  E++        D++RR    ++G+ +     E  D R
Sbjct: 493 CRAGHVTKREVGAIKIGGTETLFEIAGSHAHKYADIIRREGSGERGVVI-----EPVDVR 547

Query: 545 GYKSSGFKSKNSQDGATKRFKRFK 568
           G ++   ++++  +    R++R +
Sbjct: 548 GGRAPALRTEHDDEDRPSRYERAR 571


>gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13]
 gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 626

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+ +VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRVIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
 gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
          Length = 662

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/532 (52%), Positives = 368/532 (69%), Gaps = 20/532 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  AL+ RGY  LT VQEA+ +P L   D+LVSAQTGSGKTV FGLA+A TLL   +R 
Sbjct: 23  ALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLDGAERL 82

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA+APLAL +APTRELA+QV REL WLYA+ G  +  C+GG+    ERR L+ GAHIVV
Sbjct: 83  PPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVSCVGGMDARDERRALERGAHIVV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRLCDHI    L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P +RR LMFSAT+
Sbjct: 143 GTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPAERRTLMFSATV 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA+ +Q+DA RV   +  +QH+DI Y+A+ V   D + A++N+LRYH A+NAIV
Sbjct: 203 PPMIAKLAEKFQRDAHRVTTLTGAKQHADISYQALTVVPHDAEGAVINLLRYHDAQNAIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA V+R T  LA   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGID
Sbjct: 263 FANTRAMVARLTARLANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVATDVAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  ++      +AERL + A ++  W
Sbjct: 323 LPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVAVKSANKAERLLKFAKITAEW 382

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ + I  +D +R+L DP++ ++    E      LLA H PE IAA +LR++++   
Sbjct: 383 TTPPTPDDIEAKDRERLLSDPVWSETPSETEAAFAAELLALHSPEVIAAAYLRLYKSRWS 442

Query: 430 APEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
           APEE++ P S    R+R                 F  S WF+LSVG+  +AEARWL+P+L
Sbjct: 443 APEELSAPGSPAPARERA---------------AFGPSRWFALSVGNNDRAEARWLLPLL 487

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYL 536
           CR+  +++ +IGAIRVQ   TFVE++   V      L    +LD+GI  + L
Sbjct: 488 CRAGNMDKSAIGAIRVQASETFVELAEAAVPGFLSALGEGGQLDEGIIARQL 539


>gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1]
 gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1]
 gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 626

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 277/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGECFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686]
 gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 626

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTP RL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|294851527|ref|ZP_06792200.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
 gi|294820116|gb|EFG37115.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
          Length = 626

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/592 (46%), Positives = 384/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+V+ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVRNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAP++ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPNIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 626

 Score =  525 bits (1352), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 383/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTP RL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya]
 gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 534

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/534 (49%), Positives = 365/534 (68%), Gaps = 15/534 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKAD 534


>gi|39937062|ref|NP_949338.1| putative DEAD-box protein ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
 gi|39650919|emb|CAE29442.1| putative DEAD-box protein, ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
          Length = 694

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/557 (50%), Positives = 370/557 (66%), Gaps = 19/557 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 6   FPTSPPPLARALAERNYLQATPVQSAVLAPDTAGRDLLVSAQTGSGKTVAYGLAIAQDLL 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L +
Sbjct: 66  GDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELAD 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L
Sbjct: 126 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A +D ++A+VN+LRY  
Sbjct: 186 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYVE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDV
Sbjct: 246 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + A
Sbjct: 306 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGVSVLLVPPARRRRAELLLQLA 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R+
Sbjct: 366 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARV 425

Query: 424 HRAGLCAPEEITPVSLVSGRDR---------------FRDDS-RAFKVGGGSRDNFKGSS 467
            RA + APE+I        R R                RD + R+     G +    G  
Sbjct: 426 VRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGGV 485

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
           WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S+   D     +K 
Sbjct: 486 WFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIKR 545

Query: 528 ---DKGIQLKYLGGEKP 541
              D  I+++ L G KP
Sbjct: 546 PDHDDNIRIEPLIGAKP 562


>gi|115522860|ref|YP_779771.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516807|gb|ABJ04791.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 694

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/588 (48%), Positives = 379/588 (64%), Gaps = 25/588 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FLTTPPPLARALAERNYLEATPVQAAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIARDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++F+PA+APLAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+L  
Sbjct: 63  GDVEQFAPAAAPLALIVAPTRELALQVHRELGWLYRNAGARVVSCVGGMDPRREQRELAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPETRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI TLAK YQ +A RV +A     H DI+YRA+ +A SD ++A+VN+LR+  
Sbjct: 183 LFSATLPRAIVTLAKTYQHNAFRVEVAGGEHGHVDIEYRAIRIAPSDVEHAVVNVLRFIE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + +AIVFC+TR +V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDV
Sbjct: 243 SPSAIVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTTALNSLRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LV+HA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L   A
Sbjct: 303 AARGIDLPNLGLVVHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAETLLNLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +W  AP  + IR  D QR++QD LF +    +++++   LLA+   E+IA    R+
Sbjct: 363 GIDAIWGTAPQADEIRTLDQQRMMQDALFTEEASTEDQELARALLAERSGEEIAVALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDR-----------FRDD---------SRAFKVGGGSRDNF 463
           +RA L APE+I    L   R R            R+D          R      G +   
Sbjct: 423 YRARLPAPEDILDPGLAHARARDDRAAGKGPRAAREDRDYGPRDSAPRPRSAKAGQKHAM 482

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
               WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E+S    +    
Sbjct: 483 TDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTSTEFEISQSAAEAFAA 542

Query: 524 TVKL---DKGIQLKYLGGEKPDFRGYKSSGFKSK--NSQDGATKRFKR 566
            +K    D  I+++ L G KP         FK    N  D   +R KR
Sbjct: 543 QIKRPDKDDNIRIEPLIGAKPLEPSNDKPAFKPHDGNKPDRDARRDKR 590


>gi|192292890|ref|YP_001993495.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192286639|gb|ACF03020.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 691

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 279/557 (50%), Positives = 370/557 (66%), Gaps = 19/557 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FPTSPPPLARALAERNYLQATPVQSAVLAPDTTGRDLLVSAQTGSGKTVAYGLAIARDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L +
Sbjct: 63  GDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELAD 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A +D ++A+VN+LRY  
Sbjct: 183 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDV
Sbjct: 243 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + A
Sbjct: 303 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R+
Sbjct: 363 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARM 422

Query: 424 HRAGLCAPEEITPVSLVSGRDR---------------FRDDS-RAFKVGGGSRDNFKGSS 467
            RA + APE+I        R R                RD + R+     G +    G  
Sbjct: 423 VRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGGV 482

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
           WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S+   D     +K 
Sbjct: 483 WFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIKR 542

Query: 528 ---DKGIQLKYLGGEKP 541
              D  I+++ L G KP
Sbjct: 543 PDHDDNIRIEPLIGAKP 559


>gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
 gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
          Length = 626

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 276/592 (46%), Positives = 382/592 (64%), Gaps = 35/592 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +N + LLHRSGRTGRAGRKG  V V+P   +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNSDTLLHRSGRTGRAGRKGTCVLVVPFLRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG---------SRDNFKG 465
           L    A   A EE++  PV  V G+    DRF    R  +              R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQD 558
             ++G   K L                   G  KP    +K  GF+  +  D
Sbjct: 541 A-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD 591


>gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
 gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
          Length = 667

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/524 (50%), Positives = 357/524 (68%), Gaps = 14/524 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+++GY  LT VQ  +   +    D+LVSAQTGSGKTV FG+A+A T+L +   
Sbjct: 3   KTLEDALAKQGYDTLTPVQLEVSKKEFENSDLLVSAQTGSGKTVGFGIAIAPTILKDAIN 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY      +A C+GG+ +  ERR L+ G+HIV
Sbjct: 63  FDKAVAPLALVIAPTRELAMQVKRELTWLYGMAKATIASCVGGMDMRDERRSLERGSHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI+   +N+S +KAVVLDEADEMLDLGFR+D+EFIL  +P+ RR LMFSAT
Sbjct: 123 VATPGRLRDHIQRGSINLSQVKAVVLDEADEMLDLGFREDLEFILSEAPESRRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQKDA+R+   S+ +QH+DI+Y A+ V+  D +NAI+N LRY+ A NA+
Sbjct: 183 VPRAIVNLAKSYQKDAIRITTVSDTKQHADIEYIAMTVSPRDGENAIINALRYYEAPNAL 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HAEL  N E +LHRSGRTGRAGR+G+S  ++P   +++AERL +   V+  
Sbjct: 303 DLPNLDLVVHAELPQNHETMLHRSGRTGRAGRQGVSAMIVPSRFRKKAERLLQLGKVTAN 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W+ APS + I E+D +R+L D  + +     EK  VD L    + E++A  F R++ A  
Sbjct: 363 WQDAPSAKQIIEKDQERLLSDSTWTNLPTSAEKGSVDKLTETFNIEQLATAFFRLYIANQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+ P S  +G  + R +             F  + WFS+S G +  A  R ++PM+
Sbjct: 423 SAPEELAP-SGATGAPKPRGE-------------FGPTVWFSISGGREADANPRRMLPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           C++  ++R  IGAIR+Q   TF+E+    V+   + +  +K I+
Sbjct: 469 CKAGNLSRDDIGAIRIQDTETFIEILKSSVEGFLKAIGSNKEIE 512


>gi|299135345|ref|ZP_07028536.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298590322|gb|EFI50526.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 653

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/531 (52%), Positives = 359/531 (67%), Gaps = 23/531 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  I   +  AL+ER Y  LT VQ A+L  D  ++D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FPTISSPLARALAERNYDKLTPVQTAVLADDAADRDLLVSAQTGSGKTVAYGLAIAKNLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + +RF  A+APLAL +APTRELA+QV REL WLY      +  C+GG+   RE+R+L  
Sbjct: 63  GDAERFPRAAAPLALIVAPTRELALQVHRELTWLYHYADARIVSCVGGMDPRREQRELAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I TLAK YQ+ A RV +A +   H+DIDYRA+ +A SD ++A VN+LR+  
Sbjct: 183 LFSATFPRGIITLAKQYQQQAFRVEVAGDEGGHADIDYRAIRIAASDVEHATVNVLRFFE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + +A+VFC+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 SPSALVFCNTRNAVKHLQVALMERGFSVVALSGELTQNERTQALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L+LVIHA+L ++ E L HRSGRTGRAGRKG+SV ++P   +RRA+ L   A
Sbjct: 303 AARGIDLPNLDLVIHADLPNDAEVLQHRSGRTGRAGRKGVSVLLVPPARRRRADILLNLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           N+ V W  AP+ + IRE D +R+LQD LF   +  D+  +   LLA+  PE IAA   R+
Sbjct: 363 NIDVDWSMAPTADEIRELDQKRMLQDDLFAQEVTADDLNLARALLAERSPEDIAAALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRA----------FKVGGGSRDNFK--------- 464
           +RA L +PE+I      +GR R   D R              G GSR   K         
Sbjct: 423 YRARLPSPEDILDPGQNAGRSR---DERGRAKDDRSSRDDDRGTGSRSKTKKPSARHGMA 479

Query: 465 -GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            GS WF  ++G K+ AEARWL+PM+CR  GI++Q IG I +    T  E+S
Sbjct: 480 EGSVWFRAAIGRKKNAEARWLLPMICRRGGIDKQDIGRILIGETSTEFEIS 530


>gi|146340215|ref|YP_001205263.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
 gi|146193021|emb|CAL77030.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
          Length = 634

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/515 (52%), Positives = 358/515 (69%), Gaps = 14/515 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++ER YVN T VQ A+L  D   +D+LVSAQTGSGKTVA+GLA+A+ +L E +RF PA+A
Sbjct: 1   MAERNYVNPTPVQLAVLAEDAEGRDLLVSAQTGSGKTVAYGLAMAANMLGEAERFGPAAA 60

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+L+ GAHIVVGTPGR
Sbjct: 61  PLALIVAPTRELALQVQRELAWLYQHAGARVISCVGGMDPRREQRELEAGAHIVVGTPGR 120

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           LCDH+R   L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR L+FSAT    I 
Sbjct: 121 LCDHLRRGRLDISELKAVVLDEADEMLNLGFREDLEFILETTPETRRTLLFSATFPRGIV 180

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LAK YQ DA R+ +  +   H+DI+YRA+ +A  D ++A+VN+LR++ + +AIVFC+TR
Sbjct: 181 ALAKQYQDDAFRIEVEGDEGGHADIEYRAIRIAPDDAEHAVVNLLRFYESPSAIVFCNTR 240

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +V      L E  F VVALSGEL+Q ER+ ALQ +RDGR+RVC+ATDVAARGIDL +L+
Sbjct: 241 EAVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRSRVCVATDVAARGIDLANLD 300

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVIHAEL ++PE + HRSGRTGRAGRKG+SV ++    +RRAE L + A +   W  AP 
Sbjct: 301 LVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVSPARRRRAEMLLKLAGIEAEWGAAPQ 360

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
            E IR+ D +R+LQD +  +    ++  +   LLA+  PE IAA  +R++RA L +PE+I
Sbjct: 361 AEEIRKLDQERMLQDSVLTEESTAEDLALAQALLAERSPEDIAAALVRLYRARLPSPEDI 420

Query: 435 TPVSLVSGRDR---------FRDDSRA----FKVGGGSRDNF-KGSSWFSLSVGSKQKAE 480
                  GR R          R + RA     K G  SR    + S WF  ++G ++ AE
Sbjct: 421 LDPGEDRGRSRPDRAARERPSRGEERAPAPRTKGGKPSRHGMGEPSVWFRAAIGRRKNAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           ARWL+PM+CR  GI++Q IGAI++    T  E++A
Sbjct: 481 ARWLLPMICRRGGIDKQDIGAIKISDTTTEFEIAA 515


>gi|126460913|ref|YP_001042027.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126102577|gb|ABN75255.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 793

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 33  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 92

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 93  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 152

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 153 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 212

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 213 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 272

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 273 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 332

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 333 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 392

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 393 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 451

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +          R  F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 452 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 501

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 502 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 561

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 562 PRARDEAPRREK 573


>gi|146278925|ref|YP_001169084.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557166|gb|ABP71779.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 764

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/552 (48%), Positives = 368/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAVADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLYA+ G  +A C+GG+    ERR L+ GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYAEAGAQIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L+++ L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLTGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YR + V+  DR++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRVLTVSARDREHAIFNVLRFYEAPSAIVFCKTRMAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGAKGVSVLIAAPSEVRKAQRLLSGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  +E  + + LL +  P ++A+ F+R+ R    APE +  V
Sbjct: 377 VQERDDARLLEHPVLGQDLS-EEMPLAEKLLERFGPAQMASAFVRLWREARSAPEVLQDV 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +          R  F  + W+S+ VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPAQRAPRE----------RGEFGEAVWYSVGVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAKKFGDALEIEAGVGMVRLEGEPSLERPERAPRKPFAERT 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRTRDEAPRREK 557


>gi|221640975|ref|YP_002527237.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|221161756|gb|ACM02736.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 777

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +          R  F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPILERPERAPRKPFAERA 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRARDEAPRREK 557


>gi|332559951|ref|ZP_08414273.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides WS8N]
 gi|332277663|gb|EGJ22978.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides WS8N]
          Length = 777

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/552 (48%), Positives = 369/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +          R  F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRARDEAPRREK 557


>gi|316935560|ref|YP_004110542.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315603274|gb|ADU45809.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 701

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 279/560 (49%), Positives = 365/560 (65%), Gaps = 25/560 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y+  T VQ A+L  D   +D+LVSAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FPTSPPPLARALAERNYLEATPVQSAVLASDTAGRDLLVSAQTGSGKTVAYGLAIARDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L  
Sbjct: 63  DDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGARIVSCVGGMDPRREQRELAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A  D ++A+VN+LRY  
Sbjct: 183 LFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPGDVEHAVVNVLRYVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDV
Sbjct: 243 SPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + A
Sbjct: 303 AARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQLA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R+
Sbjct: 363 GIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALARV 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------------------FK 464
            RA + APE+I        R R   D R  K     RD+                     
Sbjct: 423 VRARMPAPEDILDPGERPARGR---DERGGKAAREPRDHEARDKAPRTRSAKAGEKHAMA 479

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G  WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S    D     
Sbjct: 480 GGVWFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISPAAADAFAAQ 539

Query: 525 VKL---DKGIQLKYLGGEKP 541
           +K    D  I+++ L G KP
Sbjct: 540 IKRPDHDDNIRIEPLIGAKP 559


>gi|148556699|ref|YP_001264281.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148501889|gb|ABQ70143.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 593

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/538 (50%), Positives = 354/538 (65%), Gaps = 10/538 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P+ + EA++ERGY   T VQ  ++  +  ++D+LVSAQTGSGKTVA+GLA+A TLL
Sbjct: 3   FSSLPRPVAEAITERGYTAPTPVQAQVIAAEAHDRDLLVSAQTGSGKTVAYGLAIAETLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +    A  PLAL IAPTRELA+QV REL+WLYAK G  V  C+GG++V  E+R L  
Sbjct: 63  QGAEALPRAGEPLALIIAPTRELALQVQRELQWLYAKLGARVVSCVGGMNVRVEQRQLSY 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLDLGFR+D+E ILD +P +RR L
Sbjct: 123 GCHIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTPPERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ+DA+R+   SE   H+DIDYRA+ VA +D  NA+VN+LR+H 
Sbjct: 183 LFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNVLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK A+VFC+TR +V R +  L E  F  V LSGELSQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AKGAMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP LELVIHAEL  +PE L HRSGRTGRAGRKG  V + P   +R AERL R A
Sbjct: 303 AARGIDLPGLELVIHAELPIDPETLQHRSGRTGRAGRKGTCVLITPYQRRRHAERLLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           NV+  W+  P+ + I  RD +R+L+  L +  I  ++  +   LL     E+IAA F+R 
Sbjct: 363 NVNATWDKVPTPDEIYARDQERLLES-LSVGEISDEDLDVARKLLETRSAEEIAAAFVRT 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            R  L APE++   S ++     R D        G R  F+ + WF ++VG    A+ RW
Sbjct: 422 QRQSLPAPEDLIDASPIA-----RGDREQATREQGPRPGFEDTVWFRMNVGRGANADPRW 476

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLG 537
           L+P+LCR   I ++ +GAIR+    T  E    ++    D L+RT   + G+ ++  G
Sbjct: 477 LLPLLCRRGHITKREVGAIRIFQTETRFEIPRAIAGKFTDALKRTAGEEDGVVIEPAG 534


>gi|254476157|ref|ZP_05089543.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
 gi|214030400|gb|EEB71235.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
          Length = 724

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 274/527 (51%), Positives = 351/527 (66%), Gaps = 16/527 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL  RGY  LT VQ A+  P+L   D+LVSAQTGSGKTV FGLA+A TLL + +    A
Sbjct: 7   QALQARGYEQLTPVQLAVTAPELENSDLLVSAQTGSGKTVGFGLAMAPTLLGDAETLGRA 66

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR L+ GAHIVV TP
Sbjct: 67  TLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 126

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    +++S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR LMFSAT+   
Sbjct: 127 GRLRDHINRGSIDLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPAG 186

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D ++AI+N+LRYH A NAIVFC+
Sbjct: 187 IARLAETYLKDHQRIKTLAEASQHADIEYQMLAVAQRDTEHAIINVLRYHEAPNAIVFCN 246

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA V+R T  L+   F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGIDLP 
Sbjct: 247 TRAVVNRLTTRLSNRGFSVVALSGELTQSERSNALQSLRDGRARVCVATDVAARGIDLPK 306

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL R A ++    PA
Sbjct: 307 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETTPA 366

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           PS + +R RD +R+L DP + D++   E   V  LL +  PE++A  +LR+      APE
Sbjct: 367 PSADQVRARDFERLLADPAWSDAVSEGEAPAVAELLERFAPEQLAVAYLRLFHQRHSAPE 426

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
           E++             D +A +     R  F  S WFS+S G K  AE R L+P LC + 
Sbjct: 427 ELS-------------DPQADRRERQERAPFGPSVWFSVSGGRKAGAEPRRLLPALCNAG 473

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYL 536
           G+ +  IGAIRVQ D ++VEV     D     VK   L++G  +  L
Sbjct: 474 GLTKDDIGAIRVQFDQSYVEVREASADAFWGAVKHEGLEEGASVTRL 520


>gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 609

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/551 (48%), Positives = 367/551 (66%), Gaps = 9/551 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  AL+ER Y + T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A TLL  ++RF
Sbjct: 6   ALARALAERDYNDPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMADTLLGTDERF 65

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA+AP AL +APTRELA+QV RE EWLYA TG  +  C+GG+   +E+R L  GAH+VV
Sbjct: 66  GPATAPQALVVAPTRELALQVQREFEWLYAATGARIVSCVGGMDPRQEQRALSRGAHMVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH+    L+IS ++ VVLDEADEMLDLGFR+D++FILD++P +RR L+FSAT+
Sbjct: 126 GTPGRLRDHLERGRLDISAVRVVVLDEADEMLDLGFREDLQFILDATPPERRSLLFSATL 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              IT LAK YQ++A+R+ +AS    H+DI+YRA+ V   + ++A+VN+LR++ A +AIV
Sbjct: 186 PRGITMLAKRYQREALRIEVASAEGGHADIEYRAMRVVPKEIEHAVVNVLRFYDAPSAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+TR +V      L E  F  VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGID
Sbjct: 246 FCNTRETVRHLHATLQERQFSAVALSGELSQNERNSALQALRDGRARVCVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P   +RR E + R   ++  W
Sbjct: 306 LPSLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDMLRGMGLTPAW 365

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ + IR+ D +R+L+DPL  D    ++  +   LL +   E + A  +R++RAGL 
Sbjct: 366 SGPPTADEIRKLDHERMLRDPLLTDEPNEEDAAVARALLEQQPAEHLVAALVRLYRAGLP 425

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           +PEE+       GRDR                   G +WF L++G + KA+ RWL+P++C
Sbjct: 426 SPEEVADPGEPRGRDRAAARGLGGPG------GAGGGAWFRLNIGRRNKADPRWLLPLIC 479

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG--IQLKYLGGEKPDFRGYK 547
           R   + R  IGAIR+  + T  EVSA  +D    + +   G  + ++ L G  P  R  +
Sbjct: 480 RRGNVTRDDIGAIRIFDEETAFEVSAAALDRFSTSARKSDGSDVIIEPLPGGAPSSRPER 539

Query: 548 SSGFKSKNSQD 558
            +  + K  QD
Sbjct: 540 PAP-RWKGPQD 549


>gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium
           66A03]
          Length = 659

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/534 (49%), Positives = 351/534 (65%), Gaps = 22/534 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + EA+S R Y+ LT VQEA+L  +    D+LVSAQTGSGKT+AFG+++A+TLLAE 
Sbjct: 7   IHSALAEAMSARSYITLTPVQEAVLKIEDSNSDLLVSAQTGSGKTLAFGISIATTLLAEK 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F     PLA+ IAPTRELA+QV +ELEWLY +T    A C+GG+    ERR L++GAH
Sbjct: 67  MEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRTKAQFASCVGGMDPRAERRTLESGAH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    L +S +KAVVLDEADEMLD+GFR+D+ FIL  +P +RR L+FS
Sbjct: 127 IVVGTPGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVERRTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK YQKD+VR++++S+  QH DI Y A+ +  SDRD A++N+LRYH    
Sbjct: 187 ATVPTQIVKLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLRYHDVSG 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC+TRA+V+     L    F VVALSGELSQ+ER+ ALQ MR G+A VC+ATDVAAR
Sbjct: 247 AIVFCNTRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDLP+LELVIHA+L  + E +LHRSGRTGRAGRKG+SV +IP    ++ ER+F    + 
Sbjct: 307 GIDLPNLELVIHADLPQSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFKKVERMFDSNGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            +W   PS + I E+D   +L+  L        E ++   +L K   E IA+ F+R   A
Sbjct: 367 PIWVNPPSADQIIEKDRISLLKSELLTSPADASEVEIAQKILQKFPIEAIASAFVRSQMA 426

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G  APEE+T  + +   D                  F  SSWF LSVG +  AE RWL+ 
Sbjct: 427 GKSAPEELTVSNAIGPAD------------------FSNSSWFELSVGYRDNAEPRWLVA 468

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
           MLCR   +++  IG I++   LTFVE++++GV  L   +     L++ IQ+K +
Sbjct: 469 MLCRVGNMDKSLIGDIQIHNSLTFVEIASNGVQQLLAEIGPDFMLEEKIQIKQM 522


>gi|83859788|ref|ZP_00953308.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852147|gb|EAP90001.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 685

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/576 (47%), Positives = 367/576 (63%), Gaps = 18/576 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     IP  +  AL  +GY  LT VQ A+L  +   +D+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MSFPNTIPSALVTALEAKGYETLTDVQNAVLTDEADGRDLLVSAQTGSGKTVAFGMAMAG 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLLA  DR   A APLAL IAPTRELA+QV REL+WLYA+ G  +A  +GG+    ERR 
Sbjct: 61  TLLAGEDRLPQAGAPLALIIAPTRELALQVQRELDWLYAEAGAKLASAVGGLDPRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI  K L++S+++A+ LDEADEMLD GFR+D+EFIL S+P++R
Sbjct: 121 LERGAHIVVGTPGRLRDHIERKALDLSNIRAIALDEADEMLDFGFREDLEFILGSAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+S  I  +A+ YQ+DA+R++  S   QH+DI Y A  VA  DR+NA++N+LR
Sbjct: 181 RTLLFSATVSKEIARIAETYQRDALRISTLSATNQHADITYLAHTVAGHDRENAVINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YH A  A+VFC+TR +V+R    L    F  VALSGEL+Q ER+ ALQ +RDGRA VC+A
Sbjct: 241 YHAAPRALVFCATRDAVNRLAAKLHNRGFHAVALSGELTQAERTKALQALRDGRATVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LV+HAE  +N E+LLHRSGRTGRAG KG SVFV+  + + R  RL 
Sbjct: 301 TDVAARGIDLPGLDLVVHAEPPTNAESLLHRSGRTGRAGAKGTSVFVVASSRKGRVIRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REA V   W  AP  + +RE+D +R+   P     +  D  + V  L+ +   EK+ A F
Sbjct: 361 REAKVQAEWVDAPDADLVREKDRERLGDHPALSQEVDEDRLEEVRELIERFGAEKLTAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L      + APEE++       R+   D  R  + G   R++F    WF + +G KQ+AE
Sbjct: 421 LSELERRMPAPEELSGTPPERQREERAD--RGPRRG---REDFDAGQWFEIDLGRKQRAE 475

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYL 536
            RWL+P++CR  GI    IGAIR+    T  +++ D +D     + +  + DK +++   
Sbjct: 476 PRWLVPLICRVGGIVGNDIGAIRIGETATRFQIAEDKIDGFTEAMNQPRETDKNVRVTIA 535

Query: 537 GGEK-----PDF----RGYKSSGFKSKNSQDGATKR 563
           G E      P F    RG +  G   +  + G  +R
Sbjct: 536 GDEPFETAGPGFGSGPRGDRDRGKPKRTPRPGKAER 571


>gi|90422395|ref|YP_530765.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90104409|gb|ABD86446.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 659

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/588 (48%), Positives = 382/588 (64%), Gaps = 26/588 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+ER Y + T VQ A+L      +D+LVSAQTGSGKTVA+GLA+A  LL + +RF 
Sbjct: 10  LARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKTVAYGLAIAKNLLGDAERFE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+APLAL +APTRELA+QV REL WLYA     V  C+GG+   +E+R+L  GAHIVVG
Sbjct: 70  QAAAPLALIVAPTRELALQVHRELAWLYAYADARVVSCVGGMDPRQEQRELARGAHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  RR L+FSAT+ 
Sbjct: 130 TPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRRTLLFSATLP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK YQ+ A RV +A+    H+DI+Y+A+ +A  D ++A+VN+LR+H + + IVF
Sbjct: 190 RGIVALAKQYQQQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFHESPSTIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDVAARGIDL
Sbjct: 250 CNTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVATDVAARGIDL 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+L LVIHA+L ++ E + HRSGRTGRAG+KG+SV ++P   +RRAE L   A +  VW 
Sbjct: 310 PNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNLAGIDAVWG 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
            APS + IR+ D +R+ QD LF +    ++  +   LLA+  PE IAA   R++RA L +
Sbjct: 370 TAPSADEIRKLDQERMFQDALFAEEPSAEDLVLAQALLAERSPEYIAAALARLYRARLPS 429

Query: 431 PEEI-----------TPVSLVSGRDRFRDDSRAF----KVGGGS-RDNFKGSSWFSLSVG 474
           PE+I            P +   G  R R + R +    + G  S R   +G  WF  ++G
Sbjct: 430 PEDILDPGERGARSREPRATTRGDSRPRAEDRDYSPKARPGKASTRHAMEGGVWFRAAIG 489

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKG 530
            K+ AEARWL+PM+CR  GI++Q IGAIR+    T  E+S    +    ++RR  K D  
Sbjct: 490 RKKNAEARWLLPMICRRGGIDKQDIGAIRIHDTTTEFEISGAAAESFAAMIRRPDKEDN- 548

Query: 531 IQLKYLGG-----EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           I+++ +G      + PD R      ++ K S D +  R     GA ++
Sbjct: 549 IRIEAMGDAPAAQQAPDRRPPAGKPYERKPSSDKSYDRNHAGDGAPRD 596


>gi|90420716|ref|ZP_01228622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335007|gb|EAS48768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 583

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/512 (50%), Positives = 348/512 (67%), Gaps = 1/512 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL+ERGYV+ T VQ+A+L P   ++D+LVSAQTGSGKT+A+GLALA TLL
Sbjct: 3   FRTTSTPLAHALAERGYVDPTPVQDAVLEPQAADRDLLVSAQTGSGKTIAYGLALAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E +RF PA AP+AL +APTRELA+QV  EL WLYA+TG  +  C+GG+    E+R L  
Sbjct: 63  GEAERFGPAGAPMALIVAPTRELAMQVTTELAWLYAQTGAEMVTCVGGMDPRAEKRKLAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L I  LKA+VLDEADEML+LGFR+D+EF+L+++P++RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALQIGGLKALVLDEADEMLNLGFREDLEFLLEATPRERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I+++AK YQ+DA+R+     +  H+DI+Y+A+ +A ++ ++A+VN+LR++ 
Sbjct: 183 LFSATLPKLISSMAKRYQRDALRIEATRSSAAHADIEYKAIRIAPNELEHAVVNVLRFND 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A +AIVFC+TR +V   +  L E  F  V LSGEL Q ER+ A+Q +RDGRARVC+ATDV
Sbjct: 243 APSAIVFCNTREAVRHLSSGLLERGFSAVTLSGELGQAERNQAMQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL  EA
Sbjct: 303 AARGIDLPGLALVIHADLPSDAETLQHRSGRTGRAGRKGISVLLVPISRRRKAERLLAEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W   PS +AIR+ D  R+L DP+       D+      LL KH PE IAA   R+
Sbjct: 363 RIRAEWGGTPSADAIRKLDEDRLLTDPVLAQEPGEDDLAAARSLLEKHSPETIAAALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS-WFSLSVGSKQKAEAR 482
           +R+ L APE++            +D +   +     RD   G   WF + VG +  A+ +
Sbjct: 423 YRSRLPAPEDVFDPGFGPDPKAGKDFAGKERTPRKERDQASGPMVWFHMDVGRRNNADPK 482

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           W++P+LCR   I RQ IG I++    T  E+S
Sbjct: 483 WILPLLCRRGKITRQEIGMIKIFDRETKFEIS 514


>gi|58039896|ref|YP_191860.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58002310|gb|AAW61204.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 603

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/515 (48%), Positives = 356/515 (69%), Gaps = 6/515 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F +    +  AL  RGY  LT VQEA+L P L E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPDTHPALKRALEARGYEQLTPVQEAVLQPGLDERDLLVSAQTGSGKTVAFGLAIAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + DR  P+  P+AL IAPTRELA+QV  EL+WLYA+TG  +A CIGG     E R+L  
Sbjct: 63  GDADRLPPSPQPMALVIAPTRELALQVQSELKWLYAETGARIASCIGGTDARSEARELNR 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L++S L+ VVLDEADEMLD+GFR+++E +LD++P +RR L
Sbjct: 123 GAHIVVGTPGRLCDHLSRGSLDLSALRCVVLDEADEMLDMGFREELEQLLDAAPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I +LA+ YQK+A R++  S  +QHSDI YR V+    + + ++VN+LR++ 
Sbjct: 183 LFSATIAREIASLARRYQKNAERIDTVSGAKQHSDITYRCVITQPQEIERSLVNVLRFYE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V++    L E  F  VA+SGE+ Q ERS A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCNTRMMVNQVQAALLERGFASVAISGEMGQNERSRAIESLRSGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LVIHA + +  E LLHRSGRTGRAGRKG SV ++P N +RRAERL + A
Sbjct: 303 AARGIDVPALSLVIHASIPTAAETLLHRSGRTGRAGRKGTSVLMVPLNQRRRAERLLQMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   WE  P+ +AI E+D  R++ DP+  +++     ++V+ L+ K+D  K+AA  + +
Sbjct: 363 KIQAEWEAVPTADAIAEQDKTRLMHDPILTNAVDDMSDELVNQLVEKYDATKLAAALVGL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L   E+I P+S+ + R R     RA +      ++     WF + VG  ++A+ +W
Sbjct: 423 YRARLPKVEQIRPMSVEAPR-RTERGERAPR-----EEHTMSGEWFKMGVGRTERADPKW 476

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           L+P++CR  G+ ++ IG+IR+  + T+ +++ + V
Sbjct: 477 LIPLICRLGGVQKREIGSIRIDQEQTYFQIADESV 511


>gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 619

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 263/510 (51%), Positives = 356/510 (69%), Gaps = 6/510 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  +L+ R Y N T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A TLL  ++RF
Sbjct: 6   ALARSLAARDYDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLGVSERF 65

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+ P AL +APTRELA+QV RE  WLYA TG  +  C+GG+   +E+R L  GAH+VV
Sbjct: 66  AAATVPQALVVAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLLNQGAHVVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH+    L++S L+  VLDEADEMLDLGFR+D+EFILD++P +RR L+FSAT+
Sbjct: 126 GTPGRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  ITTLA+ YQ+DA+R+ +AS    H+DI+YR + VA ++ ++A+VN+LRY+   +AIV
Sbjct: 186 ARGITTLARRYQRDALRIEVASAEGGHADIEYRTMRVAPTEVEHAVVNVLRYYDTPSAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+TR +V R   +L E  F  VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGID
Sbjct: 246 FCNTREAVRRMHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P   +RR E L R   +   W
Sbjct: 306 LPNLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDLMRALGIKPSW 365

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+ E IR+ D +R+L+DPL  D    ++      LLA H PE +AA  +R++RAGL 
Sbjct: 366 SGPPTSEDIRKLDHERMLRDPLVADEPNEEDASAGLALLAAHSPEHLAAALVRLYRAGLP 425

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           APEE+       G  R   D  A +  GG+  +  GS WF L+VG ++ A+ +WL+P++C
Sbjct: 426 APEEVAD----PGEPRAARDLAAGRDFGGA--SGAGSVWFRLNVGRRKNADPKWLLPLIC 479

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           R   + R+ IG IR+  + T  EVS    D
Sbjct: 480 RRGNVTRKDIGVIRIFDEETAFEVSLAAAD 509


>gi|254419014|ref|ZP_05032738.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
 gi|196185191|gb|EDX80167.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
          Length = 634

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 279/571 (48%), Positives = 369/571 (64%), Gaps = 10/571 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +  AL  +GY   T VQ A+L  +  E+D+LVSAQTGSGKTVAFGLA A TLL
Sbjct: 3   FPAVHPALDRALVNKGYAEPTPVQAAVLEGEYAERDLLVSAQTGSGKTVAFGLAAAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   F P  APL LAIAPTRELA+QV  EL+WLYA +G  +A C+GG+   RE R L  
Sbjct: 63  GDKPIFGPGGAPLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARALGF 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD +P +RR L
Sbjct: 123 GVHIVVGTPGRLKDHIDRGNLDLSELKVAVLDEADEMLDMGFREDLEFILDHAPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLAK YQKDAVR++   ++RQH+DI+YRA  +A ++ ++A+VN LR++ 
Sbjct: 183 LFSATIAREIVTLAKRYQKDAVRIDATDKSRQHADIEYRAYRIAPNEIEHAVVNTLRWYE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  A+VFCSTR SV      L E  F  V+LSGE+ Q+ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 APRAMVFCSTRDSVRHLQASLLERGFSTVSLSGEMGQRERTDALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPDL LVIHAEL  N   LLHRSGRTGRAG+KG+SV ++P + +R+AERL  EA
Sbjct: 303 AARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGVSVMLVPHSRRRKAERLMDEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEKIAAGFLR 422
            +  VW  AP+ + IR+ D  R+L  P F ++   DE  +V   ++A+  P++IAA  +R
Sbjct: 363 GIDAVWSGAPTFDEIRKADEGRLLS-PEFFEADVSDEDMIVAKRMIAERTPDEIAAALVR 421

Query: 423 IHRAGLCAPEEIT-PVSLVSGRDRFR----DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           + R    APEE++ P S  S   R R    +D  A +   G R       WF L VG  +
Sbjct: 422 LLRKEQPAPEELSDPGSDRSPVKRERTVRNEDGTAAQPWPGDRLGADDVVWFRLDVGRNK 481

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
            A+ +WL+P++CR  GI++  IGAIR  P+ T  E++       R  V      ++K   
Sbjct: 482 NADPKWLIPLICRIGGISKPQIGAIRTFPEETRFEIAKTHEKAFREAVAASND-EVKITS 540

Query: 538 GEKPDFRGYKSSGF--KSKNSQDGATKRFKR 566
            E P     K+  F    K  ++   + FK+
Sbjct: 541 SEAPTPGSMKAGKFAGAGKPRREDGDRPFKK 571


>gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5]
          Length = 375

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/374 (66%), Positives = 297/374 (79%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPS 374
             A +S  W   PS
Sbjct: 361 ENAGISAAWARPPS 374


>gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 718

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 278/572 (48%), Positives = 366/572 (63%), Gaps = 33/572 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL  RGY +LT VQEA+   +L + D+LVSAQTGSGKTV FGLA+A TLL + ++   A
Sbjct: 21  QALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRA 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR L+ GAHIVV TP
Sbjct: 81  DLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    +N+S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR LMFSAT+   
Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTG 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D +NA++N+LR+H + NAIVFC+
Sbjct: 201 IARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCN 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA V+R T  L+   F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVAARGIDLP 
Sbjct: 261 TRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPK 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL R A ++    PA
Sbjct: 321 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETSPA 380

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           PS + +R RD +R+L D  + + +  +E   V  L+ +  PE++A  +LR+      APE
Sbjct: 381 PSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLFHDRHSAPE 440

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
           E++             D +  K     R  F  S WF++S G K  AE R L+P LC + 
Sbjct: 441 ELS-------------DPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLLPALCNAG 487

Query: 493 GINRQSIGAIRVQPDLTFVE------------VSADGVDLLRRTVKLDKGIQL------- 533
           G+ +  IGAIRVQ D ++VE            V  DG++      +LDK   L       
Sbjct: 488 GLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDLPKSPRPQ 547

Query: 534 -KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
            +  GG + D RG++      + S+ G  K +
Sbjct: 548 GRDGGGFRDDKRGHRGQDRGDRGSERGERKPY 579


>gi|296283638|ref|ZP_06861636.1| DEAD/DEAH box helicase-like protein [Citromicrobium bathyomarinum
           JL354]
          Length = 586

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/512 (50%), Positives = 349/512 (68%), Gaps = 13/512 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL+ERGY   T VQ A+L P+ R +D++VSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FSELPDTLQTALTERGYSEPTDVQAAVLEPEARGRDLVVSAQTGSGKTVAFGLAVARQLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN +   A APLAL IAPTRELA+QV REL WLYAK G  VA C+GG++   ER+ L++
Sbjct: 63  DENGKVPFAVAPLALVIAPTRELALQVSRELSWLYAKAGGRVATCVGGMNPSAERKALRS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVVGTPGRL DH+    L++S LKAV LDEADEMLD+GFR+++E ILD++P+ RR L
Sbjct: 123 GATIVVGTPGRLRDHLERGALDLSALKAVTLDEADEMLDMGFREELETILDATPEGRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ +A+R++  S +R H DI Y AV+V+  + +NA+VN+LRYH 
Sbjct: 183 LFSATMPKPIEALARRYQNNALRISTVSADRGHGDISYEAVVVSPPEVENAVVNLLRYHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC TR  V      L E  F VV+LSGE SQ ER+ ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCGTREKVRHMHATLQERGFAVVSLSGENSQSERNQALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LV+H E+  + E L HRSGRTGRAGRKG +V V+P + +RR E++ R A
Sbjct: 303 AARGIDLPTLSLVVHVEIPRDAETLQHRSGRTGRAGRKGTAVLVVPFSRRRRVEQMLRNA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFL 421
            +   W  AP  EAIR +D  R++Q    L +++ DE   ++VD LLA+  P ++AA  +
Sbjct: 363 KIDAKWTDAPDREAIRAKDRDRLMQ--TLLTAVEPDEGDTELVDALLAQRTPRELAAMLV 420

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
             HRA +  PE+     L++     R  ++A K     R  F+ + WF + +G ++ A+ 
Sbjct: 421 ASHRAKMPEPED-----LIANTPEARRAAQAEK----HRPGFEDTVWFKMDIGRRRNADP 471

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           RW++P+LCR   I R  +GAIR+ PD TF ++
Sbjct: 472 RWILPLLCRRGHITRNEVGAIRIGPDETFFQI 503


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/510 (51%), Positives = 340/510 (66%), Gaps = 14/510 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P V+  ALS RGY   T VQ A++  D + +D++VSAQTGSGKTVAFGLA+AS LL
Sbjct: 3   FSALPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D   PA AP+AL IAPTRELA+QV RELEWLYA     +A C+GG+   RERR L +
Sbjct: 63  QGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRALNH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD++P +RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ +A R+   SE++ H+DI Y+ V VA +D + A+VN+LR H 
Sbjct: 183 LFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRLHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 AEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E+  + E L HRSGRTGRAGRKG ++ ++P   +RR E + R A
Sbjct: 303 AARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP++E IRE+D +R+L   L    +   ++++   LLA+   E IAA  +R 
Sbjct: 363 RIDAEWRRAPTLEEIREQDRERLLTALLAPVEVDEADRELATRLLAEKSAEDIAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA L   EE+        R+R              R+ F  + WF +SVG +Q A+ RW
Sbjct: 423 HRAALPQAEELVEGDAPPPRER--------------REGFDDTVWFRMSVGRRQNADPRW 468

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           L+P++CR   I R  IGAIR+QP+ T  EV
Sbjct: 469 LLPLICRRGHITRNEIGAIRIQPNETLFEV 498


>gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 713

 Score =  512 bits (1318), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 277/572 (48%), Positives = 365/572 (63%), Gaps = 33/572 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL  RGY +LT VQEA+   +L + D+LVSAQTGSGKTV FGLA+A TLL + ++   A
Sbjct: 21  QALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLGDAEKLDRA 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR L+ GAHIVV TP
Sbjct: 81  DLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERGAHIVVATP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    +N+S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR LMFSAT+   
Sbjct: 141 GRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLMFSATVPTG 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D +NA++N+LR+H + NAIVFC+
Sbjct: 201 IARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHESPNAIVFCN 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA V+R T  L+   F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVAARGIDLP 
Sbjct: 261 TRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVAARGIDLPK 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL R A ++    PA
Sbjct: 321 LDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAKITAETSPA 380

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           PS + +R RD +R+L D  + + +  +E   V  L+ +  PE++A  +LR+      APE
Sbjct: 381 PSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLFHDRHSAPE 440

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
           E++             D +  K     R  F  S WF++S G K  AE R L+P LC + 
Sbjct: 441 ELS-------------DPQHDKREREERAPFGPSVWFAVSGGRKAGAEPRRLLPALCNAG 487

Query: 493 GINRQSIGAIRVQPDLTFVE------------VSADGVDLLRRTVKLDKGIQL------- 533
           G+ +  IGAIRVQ D ++VE            V  DG++      +LDK   L       
Sbjct: 488 GLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPDLPKSPRPQ 547

Query: 534 -KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
            +  GG + D RG++      +  + G  K +
Sbjct: 548 GRDGGGFRDDKRGHRGQDRGDRGGERGERKPY 579


>gi|85373430|ref|YP_457492.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594]
 gi|84786513|gb|ABC62695.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594]
          Length = 578

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/501 (51%), Positives = 341/501 (68%), Gaps = 9/501 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FEN+P V+GE+L+ERGY   T VQ A+  PD + +D++VSAQTGSGKTVAFGLALA  LL
Sbjct: 3   FENLPPVLGESLAERGYSAPTPVQAAVTAPDAKGRDLIVSAQTGSGKTVAFGLALADELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           AE      A  PLAL +APTRELA+QV REL WLYAK G+ +A C+GG+   +ERR L++
Sbjct: 63  AEIGGTPLAEKPLALVVAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALRS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFRDD+E ILD++P  RR L
Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFRDDLEEILDAAPDGRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ DA+R+++A ENR H DI Y+A+ VA S+ +NA+VN+LR+H 
Sbjct: 183 LFSATLPQQIVRLAQRYQTDALRLSLAGENRGHGDIAYQAISVAPSEIENAVVNLLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI FC+TR SV R    L    F VVALSGE SQ ER+ ALQ +RD RARVC+ATDV
Sbjct: 243 AETAICFCATRDSVRRLHATLQNRGFGVVALSGEHSQSERNQALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLP L LVIH E+  + E L HRSGRTGRAG+KG +  ++P N ++R E + R A
Sbjct: 303 AARGLDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRKRVESMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            ++  W  APS + IR++D  R+++          D++ +   ++ +  PE IAA  ++ 
Sbjct: 363 KIAAQWMDAPSAKDIRQQDQARLMEKLTTPTEYDEDDRALASKVMDRMAPEDIAAALVQA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA L  PEE     L++     R  S+A K     R  F+ + WF + +G +Q AE RW
Sbjct: 423 HRAKLPQPEE-----LLANTPEARAKSKAEK----HRPGFEDTVWFRMGIGRRQNAEPRW 473

Query: 484 LMPMLCRSSGINRQSIGAIRV 504
           L+P++CR   I R  IGAIR+
Sbjct: 474 LLPLICRRGHITRNEIGAIRI 494


>gi|83951704|ref|ZP_00960436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
 gi|83836710|gb|EAP76007.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
          Length = 786

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/565 (50%), Positives = 380/565 (67%), Gaps = 28/565 (4%)

Query: 5   ENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +P +  +  AL+ RGY +LT VQEA+ +PDL   D+LVSAQTGSGKTVAFGLA+A TL
Sbjct: 21  DTLPMIPPLSNALAARGYDSLTPVQEAMADPDLIGSDLLVSAQTGSGKTVAFGLAMAPTL 80

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L E + F PA+APLAL +APTRELA QV  EL WLYA+TG  +A C+GG+ +  ERR L+
Sbjct: 81  LDEAEVFGPAAAPLALVVAPTRELAFQVMNELRWLYAETGARIASCVGGMDMRDERRTLE 140

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRL DHI    L++  L+ VVLDEADEMLDLGFR+D+EF+L+++P+ RR 
Sbjct: 141 RGAHIVVGTPGRLRDHISRGSLDMDDLRVVVLDEADEMLDLGFREDLEFMLEAAPENRRT 200

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+ PAI  LA  +Q+DA R+N  S   QH+DI Y+A+ VA  + + AI N+LR+H
Sbjct: 201 LLFSATVPPAIARLAGQFQRDARRINTVSSTEQHADIAYQALRVAHGEGEAAIFNLLRFH 260

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AIVF +TRA+V+  T  LA   F VV+LSGELSQ ERS+ALQ MRDGRAR+C+ATD
Sbjct: 261 DAEAAIVFANTRAAVNHLTTRLANRGFAVVSLSGELSQSERSHALQAMRDGRARICVATD 320

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHA+L  N E+L+HRSGRTGRAGRKG+S  ++     ++AER+ + 
Sbjct: 321 VAARGIDLPNLNLVIHADLPKNTESLMHRSGRTGRAGRKGVSALIVAPRDLKKAERILKF 380

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A ++  W   PS +AI E+D  R+L DP +   +   E      LLA+  PE +   +LR
Sbjct: 381 AKITAEWTLPPSADAILEQDENRLLADPAWETPLTEAETAFAARLLAEQSPEAVVGAYLR 440

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + R    APEE++  +  +G+   R D             F  ++W SLSVG K +AEAR
Sbjct: 441 LFRTRHAAPEELS--APEAGKAAPRRD----------HAEFGPATWISLSVGRKDRAEAR 488

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGG 538
           WL+P+L RS  +++ +IGAIRVQ   T+VE+S   V    D L     L+ GI ++ L  
Sbjct: 489 WLLPLLLRSGNLDKANIGAIRVQDGETYVELSTPAVSGFFDALDNNT-LEDGITVRQL-D 546

Query: 539 EKPDF--------RGYKSSGFKSKN 555
           E PD         RG + +G K ++
Sbjct: 547 EMPDLGRPAPKPHRGARPAGGKPRH 571


>gi|310830312|ref|YP_003965412.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753218|gb|ADO44361.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 672

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/565 (48%), Positives = 375/565 (66%), Gaps = 13/565 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +NI   +  ALS+RGY  LT+VQ+A+L P+   +D+LVSAQTGSGKTVAFG+A+A  LL 
Sbjct: 4   QNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDLLG 63

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +++     + P+AL IAPTRELA+QV +EL WLYA  G  +A C+GG+    ERR L   
Sbjct: 64  DDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALARL 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGRL DHI   GL++S L+  VLDEADEMLDLGFRDD+++IL ++P+ RR LM
Sbjct: 124 PQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRTLM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+++Q DA+R+    E +QH+DI Y+A+ V + DR+NAI N+LR++ +
Sbjct: 184 FSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFYES 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+FC TRA+V+     ++   F+VVALSGELSQQER+NALQ +RDGRA VCIATDVA
Sbjct: 244 RTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLP LELVIH +L +N E LLHRSGRTGRAG KG+S  ++     ++A+RL   A 
Sbjct: 304 ARGIDLPGLELVIHYDLPTNAETLLHRSGRTGRAGAKGVSALIVTPGDFKKAQRLLSFAK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           V+  W  APS E +  RD  R+++ P     +  D+  + + LLA+   E+I+A F+++ 
Sbjct: 364 VTAEWGKAPSAEEVSARDDLRMVEHPALTTKL--DDMTVANDLLARFGAEQISAAFVQLW 421

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           R G  APE +T V+  +        + A +    S   F  S WFSLS G   +AEARWL
Sbjct: 422 REGRPAPEALTVVNTPTP-----GAAPAPREPRTSPREFGASVWFSLSAGHVDRAEARWL 476

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           +P +C + GI R +IGAIRV+   TFV+++A+         +++ G+ L  + GE P+  
Sbjct: 477 LPKICDAGGITRDAIGAIRVRESETFVQIAANEAGRFANVSEIEPGLTLTQIDGE-PNLE 535

Query: 545 GYKSSGFKSKNSQDGATKRFKRFKG 569
             +SSG K    + GA K  K  KG
Sbjct: 536 -QRSSGPK----KFGAGKPGKFAKG 555


>gi|114327198|ref|YP_744355.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114315372|gb|ABI61432.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 731

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/540 (49%), Positives = 351/540 (65%), Gaps = 17/540 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F  +   +  AL  +GY +LT VQ+A+L  D  E+D+LVSAQTGSGKTVA+GLALA TL
Sbjct: 46  LFPALHPTLKAALDAKGYTSLTPVQDAVLTADAAERDLLVSAQTGSGKTVAYGLALADTL 105

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  ++R   A APLAL +APTRELA+QV +EL WLY   G  V  CIGG+   RE + L+
Sbjct: 106 LGADERLGQAGAPLALIVAPTRELAMQVQQELLWLYGPAGARVVSCIGGMDARREAQALE 165

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G HIVVGTPGRLCDH+ G+G LN+S L+AVVLDEADEMLDLGFRD++E ILD++P +RR
Sbjct: 166 RGCHIVVGTPGRLCDHL-GRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERR 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSATI+  I  LAK YQ +A+R++  S N+ H+DIDYR V V   +  +++VN+LR+
Sbjct: 225 TLLFSATIAREIAALAKRYQTNALRIDTVSRNKPHADIDYRVVRVLPHEARHSVVNVLRF 284

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           + A  A+VFC TR  V  F   L E  F  VALSGELSQ ERS AL ++R+G+ARVC+AT
Sbjct: 285 YDAPIAMVFCGTREEVRHFQASLMERGFSSVALSGELSQTERSRALHLLREGQARVCVAT 344

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+DLP L+LVIHA+L +N   LLHRSGRTGRAGRKG+SV + P N QR+A++L  
Sbjct: 345 DVAARGLDLPALDLVIHADLPTNSATLLHRSGRTGRAGRKGVSVLIAPVNRQRKADQLLH 404

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A +   W P P+VE I  RD +R+L+ P     I  DE++   +L+   D E +A   L
Sbjct: 405 TAGIRAEWTPVPTVEEISIRDRERMLESPALSAPISDDEREAARILMEGRDAEALAVAVL 464

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG------------GGSRDN---FKGS 466
           R+HR  L  PE++  V          D  +  +V                RDN    + +
Sbjct: 465 RLHRGRLPEPEDVQVVHERPSNSERGDRPQRERVRDRDRSDQDRPARAPRRDNDGEARST 524

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF LSVG    A+ +W++P+LCR+  I +  IGAIR+    TF E+ +   D     ++
Sbjct: 525 RWFKLSVGRNDNADPKWIVPLLCRAGHIRKPDIGAIRIMETETFFEIDSARADTFSSAIE 584


>gi|148260838|ref|YP_001234965.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402519|gb|ABQ31046.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 574

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/518 (50%), Positives = 346/518 (66%), Gaps = 20/518 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  +   P  +  AL+ RGY + T+VQ A+L P+   +D+LVSAQTGSGKTVA+GLA A+
Sbjct: 4   MPFYVETP-ALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAA 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L E D   PA APLAL IAPTRELA+QV  EL WLY  TG  V  C+GG+   RE+R 
Sbjct: 63  TILDE-DVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G HIVVGTPGRL DHI  + L++  L+ VVLDEADEMLDLGFRD++EFIL +SP  R
Sbjct: 122 LASGCHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSATI+  I  LA+ YQ+DA+R++  + N+ H+DI+YRA+ +A  + ++ +VN+LR
Sbjct: 182 RTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +H     +VFCSTR SV +    L E  F  VALSGELSQ ER+ ALQ +RDGRARVCIA
Sbjct: 242 FHEGAGCLVFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLP+L+LVIHA+L +N   LLHRSGRTGRAGRKG+ + ++P   +RRAE L 
Sbjct: 302 TDVAARGLDLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLL 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             AN+  +WE  P+ EAIR RD  R+L DP+  ++   +E  +   LLA    + +A   
Sbjct: 362 ASANIRAIWEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATAL 421

Query: 421 LRIHRAGLCAPEEITPVSLV-----SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +R++RA L APEEI P   V     + R    +D RA               WF   VG 
Sbjct: 422 IRLYRARLPAPEEIAPQPEVLPRPAARRAAGAEDGRAM-------------VWFRCDVGR 468

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++KA+ +WL+P +CR  G+ ++ IGAIR+    T  E+
Sbjct: 469 RKKADPKWLLPAICRVGGVTKRDIGAIRIFDHETRFEI 506


>gi|167646147|ref|YP_001683810.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167348577|gb|ABZ71312.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 776

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/525 (50%), Positives = 354/525 (67%), Gaps = 24/525 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +GY+  T VQ A+L  +   +D+LVSAQTGSGKTVAFGLA A+TLL + ++F+ A 
Sbjct: 13  ALAAQGYLEPTPVQAAVLEDEAIGRDLLVSAQTGSGKTVAFGLAAATTLLGDAEKFAKAG 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ L IAPTRELA+QV REL WLYA  G VV  C+GG+   RE+R L  GAHIVVGTPG
Sbjct: 73  LPMCLVIAPTRELAIQVNRELAWLYADAGAVVVNCVGGMDARREQRALNFGAHIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++  I
Sbjct: 133 RLRDHIERGHLDLSELKVAVLDEADEMLDMGFREDLEFILDAAPSERRTLLFSATLAREI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK+YQ DA+R++    N  H DI+YRAV VA ++ ++A+VN+LRY  +  A+VFC+T
Sbjct: 193 VQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRYFESPGALVFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL
Sbjct: 253 RESVRALHSKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V   W  AP
Sbjct: 313 GLVIHAELPVNKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLMAAGVEGHWGGAP 372

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
           + + IR +D +R+L DP+F +++  ++  + + +LAK  P +IAA  +R  RA L APEE
Sbjct: 373 TADEIRLKDTERLLDDPIFDEAVVEEDTALAEAMLAKRTPLEIAAALIRTRRAKLPAPEE 432

Query: 434 IT----------PVSLVSGR------DRFRDDSRAFKVGGG------SRDNFKGSSWFSL 471
           I           P S  +G       DRF D  R  +  GG       R +   S+WF L
Sbjct: 433 IYDDPRHGADPGPRSRDAGPRSNDAGDRFAD--RGPRDFGGDRPEREPRSDMANSAWFRL 490

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           + G +  A+ +WL+P++CR   I ++ IG+IR+    T  E+SA+
Sbjct: 491 NTGRRNNADPKWLIPLICRLGHITKKDIGSIRIFDYDTKFEISAE 535


>gi|326404232|ref|YP_004284314.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
 gi|325051094|dbj|BAJ81432.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
          Length = 571

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/513 (50%), Positives = 343/513 (66%), Gaps = 10/513 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  +   P  +  AL+ RGY + T+VQ A+L P+   +D+LVSAQTGSGKTVA+GLA A+
Sbjct: 1   MPFYVETP-ALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAA 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L E D   PA APLAL IAPTRELA+QV  EL WLY  TG  V  C+GG+   RE+R 
Sbjct: 60  TILDE-DVLPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIVVGTPGRL DHI  + L++  L+ VVLDEADEMLDLGFRD++EFIL +SP  R
Sbjct: 119 LAGGCHIVVGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSATI+  I  LA+ YQ+DA+R++  + N+ H+DI+YRA+ +A  + ++ +VN+LR
Sbjct: 179 RTLLFSATIAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +H     +VFCSTR SV +    L E  F  VALSGELSQ ER+ ALQ +RDGRARVCIA
Sbjct: 239 FHEGAGCLVFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLP+L+LVIHA+L +N   LLHRSGRTGRAGRKG+ + ++P   +RRAE L 
Sbjct: 299 TDVAARGLDLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             AN+  +WE  P+ EAIR RD  R+L DP+  ++   +E  +   LLA    + +A   
Sbjct: 359 ASANIRAIWEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATAL 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +R++RA L APEEI P   V          R         ++ +   WF   VG ++KA+
Sbjct: 419 IRLYRARLPAPEEIAPQPEVL--------PRPAARRAAGAEDGRAMVWFRCDVGRRKKAD 470

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +WL+P +CR  G+ ++ IGAIR+    T  E+
Sbjct: 471 PKWLLPAICRVGGVTKRDIGAIRIFDHETRFEI 503


>gi|307297146|ref|ZP_07576960.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877450|gb|EFN08680.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 584

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/537 (48%), Positives = 355/537 (66%), Gaps = 17/537 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE++P ++ +AL+ +GY  LT VQ  +  P+   +D++VSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FEHLPPLLSDALTRKGYEKLTPVQAEVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAGELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E  R   A  PLALAIAPTRELA+QV RELEWLY +    +A C+GG+   +ERR L +
Sbjct: 63  GEQSRLPQAGKPLALAIAPTRELALQVSRELEWLYGEARARIATCVGGMDAAKERRALSH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD +P++RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSDLKTVVLDEADEMLDMGFREDLEEILDGAPQERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQKDA+R++  S+ R H DI Y+A+ VA +D +NA+VN+LRYH 
Sbjct: 183 LFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQALTVAPADIENAVVNLLRYHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R A
Sbjct: 303 AARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + V W   PS EAI+E+D  R+ +  +    +   +  +   LL     ++IAA  ++ 
Sbjct: 363 KIPVEWGTPPSKEAIQEQDNARLREKLMERAELDEQDWALGAELLEAKSAKEIAAMLVKS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RA L APEE+             D S A +   G R  F+ + WF + +G  Q A+ RW
Sbjct: 423 ARAALPAPEELL------------DASEAPQRRDGPRPGFEDTVWFRMDIGRSQNADPRW 470

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKL-DKGIQLKY 535
           ++P++CR   ++RQ IGAIR+    T  E    +++  V  L+RT +  D+G ++ +
Sbjct: 471 ILPLICRRGHVSRQDIGAIRIAAHETLFEIPSAIASRFVSALKRTGEASDEGAEVSF 527


>gi|148256261|ref|YP_001240846.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. BTAi1]
 gi|146408434|gb|ABQ36940.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. BTAi1]
          Length = 656

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/530 (50%), Positives = 359/530 (67%), Gaps = 18/530 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     +P  +  AL+ER Y   T VQ A+L+ +  ++D+LVSAQTGSGKTVA+GLA+A+
Sbjct: 1   MSFPATVPP-LARALAERNYEQPTPVQLAVLDDEAVDRDLLVSAQTGSGKTVAYGLAMAT 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL + +RF  ASAPLAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+
Sbjct: 60  NLLGDAERFERASAPLALIVAPTRELALQVQRELAWLYQHAGARVVSCVGGMDPRREQRE 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDH+R   L+IS L+AVVLDEADEML+LGFR+D+EFIL ++P+ R
Sbjct: 120 LEAGAHIVVGTPGRLCDHLRRGRLDISDLRAVVLDEADEMLNLGFREDMEFILKTTPETR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT    I  LAK YQ DA R+ +  +   H+DI+YRAV +A  D ++A+VN+LR
Sbjct: 180 RTLLFSATFPRGIVALAKQYQDDAFRIEVEGDEGGHADIEYRAVRIAPGDAEHAVVNLLR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ + +AIVFC+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGR+RVC+A
Sbjct: 240 FYESPSAIVFCNTREAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRSRVCVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDL +L+LVIHAEL ++PE + HRSGRTGRAGRKG+SV ++P   +RRAE L 
Sbjct: 300 TDVAARGIDLANLDLVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVPPARRRRAETLL 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +  VW  AP  + IR  D +R+L DP+  +    +++ +   LLA+  PE+IAA  
Sbjct: 360 NLAGIEAVWGTAPQADEIRRLDHERMLHDPVLSEETTAEDQALAQALLAERSPEEIAAAL 419

Query: 421 LRIHRAGLCAPEEITPVSLVSGR---DRFRDDSRA------------FKVGGGSRDNFKG 465
            R++RA L  PE+I   +   GR   +R RD+ R              K G  S  +  G
Sbjct: 420 ARLYRARLPPPEDILDPAEERGRGRHERDRDNGRPGRGEERPPPVPRTKTGKPSARHGMG 479

Query: 466 --SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             S WF  ++G K+ AEARWL+PM+CR  GI +  IGAI++    T  E+
Sbjct: 480 EPSVWFRAAIGRKKNAEARWLLPMICRRGGIEKLDIGAIKISDTTTEFEI 529


>gi|114799571|ref|YP_759282.1| DEAD-box ATP dependent DNA helicase [Hyphomonas neptunium ATCC
           15444]
 gi|114739745|gb|ABI77870.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Hyphomonas
           neptunium ATCC 15444]
          Length = 708

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/552 (48%), Positives = 351/552 (63%), Gaps = 31/552 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E +P  +  A+ ERGY  LT VQ A   P+L  +D+LVSA+TGSGKTVAFGLA+A+
Sbjct: 1   MNLPETLPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIAN 60

Query: 61  TLLAENDRF-SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL   D F   A+ PL L IAPTRELA+QV REL WLYA T   +A C+GG+ +  ERR
Sbjct: 61  ELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAEIATCVGGMDMRDERR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL DHI     + S ++AVVLDEADEMLDLGFR+++E IL+ +PK+
Sbjct: 121 ALERGAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR LMFSAT+   I  LA  YQK+ +R+   S+   H+DI Y A++VA  D +NAIVNI+
Sbjct: 181 RRTLMFSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIV 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+   ++AIVFCSTRASV+     L    F VVALSGE SQ+ER+NAL  +R GRARVCI
Sbjct: 241 RHSDTESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCI 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+DLP L+LVIHA+L  +P  LLHRSGRTGRAGRKG+S  ++    +RR ERL
Sbjct: 301 ATDVAARGLDLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERL 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            ++A V   W   PS + +  RD  R+L D    + +   E  +V  L+A+H PE+IA  
Sbjct: 361 LQDAKVEARWGRPPSADEVINRDDTRLLADTALTNPMADKEADLVARLMAEHTPEQIATA 420

Query: 420 FLRIHRAGLCAPEEI----------TPVSLVSGRDRFRD-DSRAFKVGGGSRD------- 461
           F+R  RAG  APE++           P      R  ++D   RA +     R+       
Sbjct: 421 FIRKARAGRTAPEDLRDVDDRPPARKPREERGDRGDWQDRPQRAERAPREPREWGEREPR 480

Query: 462 ------------NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
                       +  G+ W +++VG K+ A+ +WL+PMLC++  I+R  IG IR+    T
Sbjct: 481 EPRAPRPQRERASLDGAVWIAINVGRKKNADPKWLLPMLCKAGDIDRDQIGQIRINNGNT 540

Query: 510 FVEVSADGVDLL 521
            VE++ +G   L
Sbjct: 541 HVELTPEGAQRL 552


>gi|114569451|ref|YP_756131.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114339913|gb|ABI65193.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 787

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/530 (49%), Positives = 358/530 (67%), Gaps = 10/530 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +   I   +  AL ++GY  LT VQ A++  +   +D+LVSAQTGSGKT AFG+A+A 
Sbjct: 1   MTLNPRIAPALAAALEKKGYAALTEVQSAVIAEEAEGRDLLVSAQTGSGKTAAFGMAMAK 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL ++D+F+    P+AL +APTRELA+QV REL WLY +    +A C+GG+    ER+ 
Sbjct: 61  TLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGEARGQIASCVGGMDPRAERKA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIVVGTPGRL DHI    L++S LKAVVLDEADEMLD GFR+D+E+ILD++P  R
Sbjct: 121 LERGCHIVVGTPGRLRDHIERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+  AI  +A+ +QKDA+R++  SE  QH+DI+YRA+ VA SDR+NAI+N+LR
Sbjct: 181 RTLLFSATVPRAIADIARRFQKDALRISTVSERGQHADIEYRALSVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+ AI+FC+TR +V+R         F  VALSGEL+Q+ER++ALQ +RDGRARVC+A
Sbjct: 241 YYDAERAIIFCATREAVNRLAARFGNRGFAAVALSGELTQKERTHALQALRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG KG+   ++P   + RA RL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDVLLHRSGRTGRAGAKGVCAIIVPHTRRGRANRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R+A +   W  APS + +R RD +R++ DP+  +++    K   D LL K   E++AA F
Sbjct: 361 RDAKLQAEWAEAPSSDDVRARDRERLMADPILTEAVDEAMKVDTDALLEKFTAEQLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR   A L + E+     L+SG     D     +     R+NFK S WF LS G K KAE
Sbjct: 421 LRARLATLPSAED-----LLSGPAAQND-----RPERKPRENFKASVWFRLSAGRKAKAE 470

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            RWL+P++CR   + ++ IG+I++    T  E+ A+  D   + +  + G
Sbjct: 471 PRWLLPLICRLGHVTKREIGSIQIGETETRFEIDAEHADRFAKALAENGG 520


>gi|170742785|ref|YP_001771440.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168197059|gb|ACA19006.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 545

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/501 (52%), Positives = 330/501 (65%), Gaps = 7/501 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL  RGY   T VQ A+L  D   +D+LVSAQTGSGKTVA+GLALA TLL
Sbjct: 3   FPPLPAPLARALDARGYDEPTPVQAAVLEADHAGRDLLVSAQTGSGKTVAYGLALAETLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E + F    APLAL IAPTRELA+QV REL WLY   G  V  C+GG+   RE R L  
Sbjct: 63  GEAEAFGAPGAPLALVIAPTRELALQVHRELAWLYGAAGARVVSCVGGMDPRRESRALAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ S L+AVVLDEADEMLDLGFR+D+EFIL ++P +RR L
Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRLRAVVLDEADEMLDLGFREDLEFILGATPVERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA++YQ++A R+ +A E R H+DI+YRAV +   + +  +VN LR   
Sbjct: 183 LFSATLPKGIVALAEHYQREARRIAVAGERRGHADIEYRAVRILPRETELVVVNTLRLVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AIVFC+TR +V     VL E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFAAVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHAEL  + E L HRSGRTGRAGRKG+SV ++P + +R+AE L  +A
Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGRKGISVLLVPGSRRRKAEELMAQA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  VW   P  + IR  D +R+L DPL  +    +++ M   LLA+   E +AA  +R 
Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLVDPLLTEETSEEDRAMAQALLAQRSAEDLAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L APEE+T     SGR              G R     S WF L+VG +  A+ R 
Sbjct: 423 YRARLPAPEEVTDPGFASGRPTAARRE-------GPRPALGPSVWFRLNVGRRDNADPRR 475

Query: 484 LMPMLCRSSGINRQSIGAIRV 504
           L+PMLCR  GI R+ +GAIR+
Sbjct: 476 LLPMLCRRGGITREEVGAIRI 496


>gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/519 (50%), Positives = 343/519 (66%), Gaps = 3/519 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      I  AL  RGY   T VQ+A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPAIRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R L+ 
Sbjct: 63  GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH     L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLA+ YQ+DA+R++  S  RQH+DI YRAV+    +   A+VNILR+  
Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V      L E  F  VALSGEL Q ER+ A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++   LLHRSGRTGRAGRKG+   ++P +M+RRAERL   A
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   P+ EAIR +DA+R+L DP+  +     ++ +V  L      E++AA  L++
Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQKAE 480
           +RA L  PE+I P+ + + R     D    K  G   D+       +WFS+SVG + KA+
Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            +WL+P++CR  G+ +  IGAIR+  D T  E++ +  +
Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAE 521


>gi|300021887|ref|YP_003754498.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523708|gb|ADJ22177.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 652

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 271/543 (49%), Positives = 361/543 (66%), Gaps = 15/543 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F ++   +G ALS RGY   T+VQ A+L  +   +D+LVSAQTGSGKTVAFGLA+ASTL
Sbjct: 2   TFPSVHPALGRALSARGYSAPTAVQLAVLEANTVGRDLLVSAQTGSGKTVAFGLAMASTL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L E +R S A+ PLAL IAPTRELA+QV REL+WLYA TG  V  C+GG+    E R L 
Sbjct: 62  LGEAERLSQAAEPLALIIAPTRELAMQVQRELDWLYADTGARVVTCVGGMDARAEARQLG 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRL DH+  + L+++ L AVVLDEADEMLDLGFR+D+EFILD++P+ R+ 
Sbjct: 122 FGAHIVVGTPGRLRDHLERRRLDLTKLAAVVLDEADEMLDLGFREDLEFILDATPEGRQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA+ YQ+DAVR+     N QH+DIDYRA+ +A +D +NAIVN+LR+H
Sbjct: 182 LLFSATMPREIEALARRYQRDAVRIETVKRNEQHADIDYRAIRIAPADTENAIVNVLRFH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A  A+VFCSTR +V R    L E  F  VALSGEL+Q ER++ALQ +RD RARV +ATD
Sbjct: 242 EADAALVFCSTREAVKRTHARLLERGFAAVALSGELTQNERTHALQALRDSRARVLVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+DLP L LVIHA+L +N E LLHRSGRTGRAG KG+SV ++P N +R+A+ L   
Sbjct: 302 VAARGLDLPALALVIHADLPNNAETLLHRSGRTGRAGNKGLSVLIVPFNRRRKADALLAA 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A + V W  AP+ E IR RD +R L   +F D    D+  +   L A    ++IA   +R
Sbjct: 362 AKLKVTWGSAPTSEEIRARDQERFLASSIFTDPATNDDLNLSQSLQANRSADEIALALVR 421

Query: 423 IHRAGLCAPEEIT-----PVSLVSGRDRFRD-DSRA------FKVGGGSRDNFKGSSWFS 470
           +HRA L APE+++     P          R+ D RA       +     RD+ +   WF 
Sbjct: 422 MHRAQLPAPEDLSDDPGPPQRRDDRARAPRERDERAGLRPKDHRSTRPVRDHGREMVWFR 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL---RRTVKL 527
           + +G ++ AE RWL+P+LCR+  + +  IG+I++    T  +++A+  D      R +K 
Sbjct: 482 IDIGRERNAEPRWLLPLLCRAGNVTKAEIGSIKIFDRDTRFQIAAEFADTFADAARAMKP 541

Query: 528 DKG 530
           ++G
Sbjct: 542 NEG 544


>gi|220922880|ref|YP_002498182.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947487|gb|ACL57879.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 545

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 260/503 (51%), Positives = 332/503 (66%), Gaps = 11/503 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL  RGY + T VQ A+L P +  +D+LVSAQTGSGKTVA+GLA+A TLL
Sbjct: 3   FPPVPAPLARALDARGYADPTPVQAAVLEPAVAGRDLLVSAQTGSGKTVAYGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +   P  APLAL IAPTRELA+QV REL WLY   G  VA C+GG+   RE R L  
Sbjct: 63  DGGETLPPPGAPLALVIAPTRELALQVHRELSWLYGAAGARVAACVGGMDPRRESRLLGE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ S ++A VLDEADEMLDLGFR+D+EFIL ++P +RR L
Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRMRATVLDEADEMLDLGFREDLEFILGATPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA++YQ++A+R+ +A E R H+DI+YRA+ +   + +  +VN LR   
Sbjct: 183 LFSATLPKGIVALAEHYQREALRIAVAGETRGHADIEYRALRILPRETELVVVNTLRLVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AIVFC+TR +V     VL E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFTAVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHAEL  + E L HRSGRTGRAG+KG+SV ++P + +R+AE L   A
Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGQKGISVLLVPPSRRRKAEELMARA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  VW   P  + IR  D +R+L DPL  D    +++ M   LLA+   E +AA  +R 
Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLADPLLTDETSEEDRAMAQALLARCSAEDLAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +RA L APEE+T     +GR     RD  RA             S WF L+VG +  A+ 
Sbjct: 423 YRARLPAPEEVTDPGFPTGRPAPARRDKPRA---------PLGPSVWFRLNVGRRDNADP 473

Query: 482 RWLMPMLCRSSGINRQSIGAIRV 504
           R L+PMLCR  G+ R  +GAIR+
Sbjct: 474 RRLLPMLCRRGGVTRDEVGAIRI 496


>gi|87200597|ref|YP_497854.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136278|gb|ABD27020.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 590

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/533 (49%), Positives = 350/533 (65%), Gaps = 20/533 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F N+PQ +  AL   GY  LT VQ A+   +   +D++VSAQTGSGKTVAFGLA+A  LL
Sbjct: 17  FANLPQPLAAALEGHGYTALTPVQSAVTEAEAHGRDLVVSAQTGSGKTVAFGLAMAGELL 76

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +      A+APLAL +APTRELA+QV REL WLYA T   +A C+GG+   RERR L +
Sbjct: 77  GDEATLPFATAPLALVVAPTRELALQVSRELTWLYAPTQARIATCVGGMDPSRERRALSH 136

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S L+ VVLDEADEMLD+GFR+D+E +LD++P+ RR L
Sbjct: 137 GAHIVVGTPGRLRDHLERGALDLSALRCVVLDEADEMLDMGFREDLEELLDATPEGRRTL 196

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ+DA+R++   E R H DI YRAV VA ++ + A+VN+LR+H 
Sbjct: 197 LFSATMPKPIEALARRYQRDALRISTVGEARGHGDIAYRAVAVAPAEIEAAVVNLLRFHE 256

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ A++FC+TR +V R    L E  F  VALSGE SQ ER+NALQ +RD RARVC+ATDV
Sbjct: 257 AETAMLFCATRDNVRRLHATLVERGFTAVALSGEHSQSERNNALQALRDRRARVCVATDV 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LV+H E+  + E L HRSGRTGRAG+KG +V ++P   +RR E + R A
Sbjct: 317 AARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPFPRRRRVEMMLRGA 376

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLAKHDPEKIAAGFL 421
            ++  W   P+ EAIR +D +R+L+    L  ++ DE  M     LL +   E++AA  +
Sbjct: 377 RINADWVDVPTPEAIRAQDRERLLE--TILAPVETDEADMEIARTLLEQRTAEELAAALV 434

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           R HRA L  PEE     L+SG D  R  +         R  F+   WF + VG +Q A+ 
Sbjct: 435 RAHRAALPQPEE-----LLSGTDEGRKQA-------THRAGFEDVVWFRMDVGRRQNADP 482

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS---ADG-VDLLRRTVKLDKG 530
           RW++P LCR    +RQ IGAIR+ P+ T+ +V    AD   D +RRT   + G
Sbjct: 483 RWILPTLCRRGHASRQEIGAIRIAPNDTWFQVPRAIADRFADAVRRTADPEGG 535


>gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 259/519 (49%), Positives = 343/519 (66%), Gaps = 3/519 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL  RGY   T VQ+A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPALRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R L+ 
Sbjct: 63  GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH     L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLA+ YQ+DA+R++  S  RQH+DI YRAV+    +   A+VNILR+  
Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V      L E  F  VALSGEL Q ER+ A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++   LLHRSGRTGRAGRKG+   ++P +M+RRAERL   A
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   P+ EAIR +DA+R+L DP+  +     ++ +V  L      E++AA  L++
Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQKAE 480
           +RA L  PE+I P+ + + R     D    K  G   D+       +WFS+SVG + KA+
Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            +WL+P++CR  G+ +  IGAIR+  D T  E++ +  +
Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAE 521


>gi|294012703|ref|YP_003546163.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292676033|dbj|BAI97551.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 576

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/523 (48%), Positives = 346/523 (66%), Gaps = 12/523 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE++P ++  AL+ +GY +LT VQ  +  P+   +D++VSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FEHLPPLLSGALTRKGYESLTPVQAQVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAKELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R      PLALAIAPTRELA+QV RELEWLY +    +A C+GG+   +ERR L +
Sbjct: 63  GDASRLPAPGLPLALAIAPTRELALQVARELEWLYGEARARIATCVGGMDAAKERRALAH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD +P+ RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSGLKTVVLDEADEMLDMGFREDLEEILDGAPEGRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQKDA+R++  S+ R H DI Y+AV VA +D +NA+VN+LRYH 
Sbjct: 183 LFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQAVTVAPADIENAVVNLLRYHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP+L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R A
Sbjct: 303 AARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + V W   PS EAI+E+D  R+ +  +    +   +  +   LL     ++IAA  ++ 
Sbjct: 363 KIPVEWGTPPSKEAIQEQDNARLREKLMERADLDEQDWALGAELLEAKSAKEIAAMLVKS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RA L APEE+             D S A +   G R  F+ + WF + +G +Q A+ RW
Sbjct: 423 ARAALPAPEELL------------DASEAPQRRDGPRPGFEDTVWFRMDIGRRQNADPRW 470

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           ++P++CR   ++RQ IGAIR+  + T  E+ +  V     +VK
Sbjct: 471 ILPLICRRGHVSRQDIGAIRIAANETLFEIPSAIVSRFMGSVK 513


>gi|94497195|ref|ZP_01303767.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423300|gb|EAT08329.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 580

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/510 (49%), Positives = 340/510 (66%), Gaps = 12/510 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P ++ +AL  +GY  LT VQ  +   +   +D+LVSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FETLPALLSQALVAKGYEALTPVQSEVTQEEAHGRDLLVSAQTGSGKTVAFGLAMAGELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + +R   A  PLAL IAPTRELA+QV RELEWLY      +A C+GG+   +ERR+L +
Sbjct: 63  GDAERLPVAGLPLALVIAPTRELALQVSRELEWLYGAARARIATCVGGMDAAKERRNLSH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S ++  VLDEADEMLD+GFR+D+E ILDS+P++RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSAMRTAVLDEADEMLDMGFREDLEAILDSAPQERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I T+AK YQKDA+R++  SE R H DI Y+A+ VA SD +NA+VN+LR+H 
Sbjct: 183 LFSATMPKPIVTMAKRYQKDALRISTMSEERGHGDISYQALTVAPSDIENAVVNLLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F VVALSGE SQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAVVALSGEHSQNERNHALQALRDKRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R A
Sbjct: 303 AARGIDLPSLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + V W   PS EAI E+D  R+    +    +   +  +   +LA+   ++IAA  ++ 
Sbjct: 363 KIPVEWGTPPSKEAILEQDNARLRASLMERAELDEADWALGAEILAEKSAKEIAAMLVKS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RA L APEE+             D S A     G R  F+ + WF + +G +Q A+ RW
Sbjct: 423 ARAALPAPEELL------------DRSEAPTRNDGPRPGFEDTQWFRMDIGRRQNADPRW 470

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++P++CR   ++RQ IGAIR+  + T  E+
Sbjct: 471 ILPLICRRGHVSRQDIGAIRITTNETMFEI 500


>gi|85708865|ref|ZP_01039931.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
 gi|85690399|gb|EAQ30402.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
          Length = 598

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/572 (47%), Positives = 365/572 (63%), Gaps = 14/572 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P  IGEAL+ERGY   T VQ A + PD   +D++VSAQTGSGKTVAFG+ALA  +L
Sbjct: 3   FEILPPAIGEALAERGYSEPTPVQAAAMAPDSAGRDLIVSAQTGSGKTVAFGIALAQDIL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         PL LAIAPTRELA+QV REL WLYAK G+ +A C+GG+   +ERR L++
Sbjct: 63  DQISGTPLQERPLVLAIAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALRS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E ILD++P  RR L
Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLIGVVLDEADEMLDMGFREDLEEILDATPDTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA+ YQ DA+R+++  ++R H DI+Y+A+ VA S+ +NA+VN+LR+H 
Sbjct: 183 LFSATMPQAIVRLAQKYQSDALRLSLGGKDRGHGDIEYQAITVAPSEIENAVVNLLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A++AI FC+TR SV R    L    F VV+LSGE SQ ER+ ALQ MRD RARVC+ATDV
Sbjct: 243 AESAICFCATRESVRRLHSALQNRGFGVVSLSGENSQSERNQALQAMRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E   + E L HRSGRTGRAG+KG +  ++P N +RR + +   A
Sbjct: 303 AARGIDLPTLSLVIHVETPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVDAMLNGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  APS EAIR++D  R+++        + D++ +   LLA+  PE IAA  ++ 
Sbjct: 363 KIKAQWLDAPSPEAIRKKDHARLMEKLTQPAEYEADDRAIASELLARMSPEDIAAALVKA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA L  PEE+   +    R++ + + +        R  F+ + WF + VG +  AE RW
Sbjct: 423 HRAELPEPEEML-ANTPEAREKAKKERQ--------RPGFEDTVWFKIGVGRRHNAEPRW 473

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGE 539
           L+P++CR   I R  IGAIRV  + ++ +    ++A   D L +T   DK  Q   L  E
Sbjct: 474 LLPLICRRGHITRNEIGAIRVGQNESWFQIPRPIAAKFADTLEQTFS-DKDDQDAILIEE 532

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             +    ++   +  +S     K F + K AS
Sbjct: 533 SAEGPRIEARNNRKNHSGKPFVKPFGKGKNAS 564


>gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 593

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/523 (49%), Positives = 341/523 (65%), Gaps = 22/523 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL E+GY N T VQ A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPALQRALDEQGYENPTPVQTAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ++R  PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R LQ 
Sbjct: 63  GGDERLGPAGAPLAVIIAPTRELAMQVTRELTWLYAAAGARIVSCIGGMDARREARALQI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L ++ L+ VVLDEADEMLDLGFRD++E +LD+ PK RR L
Sbjct: 123 GAHIVVGTPGRLCDHLSRGRLVMTDLRVVVLDEADEMLDLGFRDELEQLLDAMPKTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I +LAK YQ DA+R++  S  +QH+DI+YRA+L    +   ++VN+LR   
Sbjct: 183 LFSATIAREIASLAKRYQHDALRIDTLSGTKQHADIEYRALLTDAREIIPSVVNVLRETD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   +VFC+TR  V      L E  F  VALSGEL Q ER+ A+  +R G+A VC+ATDV
Sbjct: 243 SPTTMVFCATRELVRHLQSALVERGFSSVALSGELGQAERTRAIDSLRKGQASVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++P  LLHRSGRTGRAGRKG+ V ++P + +RRAERL   A
Sbjct: 303 AARGIDIPALALVVHASLPTDPATLLHRSGRTGRAGRKGVCVLMVPVSQRRRAERLMMGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +S  W   PS E IR  D QR+L DP    ++   + +++  L   H PE++AA  LR 
Sbjct: 363 KISATWSAVPSAEEIRVLDTQRLLADPALSAAVPEADHELIARLTEGHSPEQLAAALLRS 422

Query: 424 HRAGLCAPE---EITPVSLVSGRDRFRDDSRAFKVGGG-----SRDNF--KGSSWFSLSV 473
           +RA L  PE   +ITP            D+RA +  G       RD+   +  SWFS+SV
Sbjct: 423 YRAHLPQPENVRQITP------------DTRAPRAEGPRAPREGRDHAPREPGSWFSMSV 470

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           G + KA+ +WL+P++CR  G+ +  IGAIR+    T  E++ D
Sbjct: 471 GRQDKADPKWLVPLICRLGGVRKSDIGAIRIADTQTLFEITPD 513


>gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 732

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/505 (52%), Positives = 347/505 (68%), Gaps = 2/505 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +GY   T VQ A+L  D  ++D+LVSAQTGSGKTVAFGLA A TLL E + F  A+
Sbjct: 13  ALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGEAETFGQAA 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            PLAL IAPTRELA+QV REL WLYA+   VV  C+GG+   RE+R L  GAHIVVGTPG
Sbjct: 73  EPLALVIAPTRELAMQVNRELTWLYAEAKAVVVNCVGGMDARREQRALNYGAHIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    L++S L+  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++  I
Sbjct: 133 RLRDHIERGHLDLSKLQVAVLDEADEMLDMGFREDLEFILDAAPPERRTLLFSATLARDI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK YQ DAVR++    N  H DI+YRAV VA ++ ++A+VN+LR+  A  A+VF +T
Sbjct: 193 VELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGALVFANT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL
Sbjct: 253 RESVRGLHNKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V   W  AP
Sbjct: 313 GLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEADWGGAP 372

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
           S ++IRE+D +R+L+DP+F ++   ++  + + +LAK  P +IAA  +R  RA L +PE+
Sbjct: 373 SADSIREKDQERLLEDPIFAEAATEEDIALAEAMLAKRTPVEIAAALIRTRRAKLPSPED 432

Query: 434 I--TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491
           I   P        R R      +     R + +GS WF +SVG +  A+ +WL+PM+CR 
Sbjct: 433 IYDDPRHGADPGPRLRTGEPGERPEREPRVSMEGSEWFRISVGRRGNADPKWLIPMICRL 492

Query: 492 SGINRQSIGAIRVQPDLTFVEVSAD 516
             + ++ IGAIR+    T  E+SA+
Sbjct: 493 GHVTKKDIGAIRIFDYDTKFEISAE 517


>gi|326389016|ref|ZP_08210598.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206616|gb|EGD57451.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 601

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/512 (48%), Positives = 344/512 (67%), Gaps = 13/512 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P +I +AL+E+GY   T VQ A+L  +  ++D+LVSAQTGSGKTVAFG+A+A+ LL
Sbjct: 17  FSSLPNLISQALAEQGYAEPTPVQAAVLGAEAHDRDLLVSAQTGSGKTVAFGVAMAARLL 76

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +E++ F+   AP AL IAPTRELA+QV REL WL+ K G+ +  C+GG+   RERR L  
Sbjct: 77  SEDNGFN--RAPGALVIAPTRELALQVSRELTWLFGKAGIRITTCVGGMDAARERRTLAQ 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E IL+++P+ RR L
Sbjct: 135 GTHVVVGTPGRLRDHLERGALDLSALHHVVLDEADEMLDMGFREDLEEILEATPEGRRTL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ+DA+R++  S+N  H DI Y+AV V+ +D +NA++N+LR+H 
Sbjct: 195 LFSATMPKPIVALARRYQRDALRISTVSDNVGHGDITYQAVAVSPADIENAVINLLRFHE 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER+NALQ +RDGRAR+C+ATDV
Sbjct: 255 AETAILFCATRDNVRHLHSSLIERGFAAVALSGEHSQNERNNALQALRDGRARICVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LVIH E+  + E L HRSGRTGRAGRKG++V ++P   +RR E + R A
Sbjct: 315 AARGIDIPSLSLVIHVEVPRDAEVLQHRSGRTGRAGRKGVAVMIVPYPRRRRVEGMLRIA 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V+  W P PS E+IRERD +R+L D L        ++ + + +LA   P  +A   ++ 
Sbjct: 375 RVTAEWVPVPSPESIRERDRERLLADLLQPIESSDADRDLAERILAAMSPTDVALALVQA 434

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G+  PEE+   S                V G  R+ F    WF + +G +Q A+ RW
Sbjct: 435 RKRGIPDPEELIEQSQADA-----------PVRGARREGFDDVVWFRMDIGRRQNADPRW 483

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           L+P+LCR   I R  IGAIR+  + T+ +V +
Sbjct: 484 LLPLLCRRGHITRNEIGAIRIAANETYFQVPS 515


>gi|23014876|ref|ZP_00054672.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 592

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 258/510 (50%), Positives = 344/510 (67%), Gaps = 3/510 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ER Y + T VQEA+L P    +D+LVSAQTGSGKTVA+GLA+A TLL +     PA
Sbjct: 12  KALTERDYTDPTDVQEAVLEPGAMGRDLLVSAQTGSGKTVAYGLAMADTLLGDAFTLEPA 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E+R L  GAHIVVGTP
Sbjct: 72  AEPLALIVAPTRELALQVHRELSWLYEHAGARVVSCVGGMDPRAEQRSLGQGAHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+   GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P++RR L+FSAT+   
Sbjct: 132 GRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSATLPHG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK YQ++A R+ +++  + H+DI+YRAV VA ++ ++A+VN+LRY  +  A+VFC+
Sbjct: 192 IVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNLLRYFESPTAMVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L E  F  VALSGEL Q ER+NALQ +RDGRARVC+ATDVAARGIDLP+
Sbjct: 252 TRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVCVATDVAARGIDLPN 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L LVIHAEL  N + L HRSGRTGRAG+KG+SV ++  + +R+A+ L + A V  +W  A
Sbjct: 312 LGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADMLLQTAGVQAIWSGA 371

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           PS + IR+ D +R+L  PL  +    D+  M   LLA+   E IAA  +R++R+ L A E
Sbjct: 372 PSADDIRKLDQERLLTSPLLAEENTEDDLAMARALLAERPAEDIAAALVRMYRSHLPAAE 431

Query: 433 EI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           E+    P S        R+        G       GS WF +++G ++ A+ RWL+PM+C
Sbjct: 432 EVFDPGPGSPTREPREHREREPRPPREGKGPGLPGGSVWFRMNIGRQKNADPRWLIPMIC 491

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           R   + +  IGAIR+    T  E+ A   D
Sbjct: 492 RQGKVTKAEIGAIRIFERETRFEIDAAHAD 521


>gi|240141300|ref|YP_002965780.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
 gi|240011277|gb|ACS42503.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
          Length = 568

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+  + E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +      +  E++  + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478
           F R++R+ +  PEE++  +  + R   R DSR+    G SR  + + ++WF L++G + +
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSSVPVGASRVGDDEPAAWFRLNLGRRDR 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           AE R L+PML R   I R  IG+IR+  + T  EV
Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513


>gi|163853846|ref|YP_001641889.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665451|gb|ABY32818.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 568

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+  + E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +      +  E++  + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478
           F R++R+ +  PEE++  +  + R   R DSR+    G SR  + + ++WF L++G + +
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           AE R L+PML R   I R  IG+IR+  + T  EV
Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513


>gi|83592722|ref|YP_426474.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83575636|gb|ABC22187.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 677

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 263/519 (50%), Positives = 346/519 (66%), Gaps = 14/519 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL ER Y   T+VQ A+L P  + +D+LVSAQTGSGKTVA+GLA+ASTLL +     
Sbjct: 10  LTQALIERNYTEPTAVQTAVLEPGAQGRDLLVSAQTGSGKTVAYGLAIASTLLGDEAVLE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA+ PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E R L  G HIVVG
Sbjct: 70  PATEPLALIVAPTRELALQVHRELAWLYGHAGAKVVSCVGGMDPRAETRRLGEGCHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    L +  LKAVVLDEADEMLDLGFR+D+EF+L+++P++RR L+FSAT+ 
Sbjct: 130 TPGRLRDHLERGNLAVGRLKAVVLDEADEMLDLGFREDLEFLLEATPQERRTLLFSATLP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI TLAK YQ++A R+ +A+  + H+DI+YRA+ VA ++ ++A+VN+LRY  +   +VF
Sbjct: 190 KAIVTLAKRYQREAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNLLRYVESPATLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR SV     +L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDVAARGIDL
Sbjct: 250 CNTRESVRHLQAILLERGFAAVALSGELGQGERNQALQALRDGRARVCVATDVAARGIDL 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P++ LVIHAEL  N + L HRSGRTGRAGRKG+SV ++  + +RRAE+L   A V   W 
Sbjct: 310 PNIGLVIHAELPQNAQTLQHRSGRTGRAGRKGISVLLVLFSRKRRAEQLLETAGVRAQWG 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
            APS + IR  D +R+LQ PL  + +  D+  M   LLA   PE+IAA  +R++RA L A
Sbjct: 370 GAPSADDIRALDQERLLQSPLVSEDLTEDDLAMAKALLAVRSPEEIAAALVRMYRAQLPA 429

Query: 431 PEEITPVSLV-----------SGRDRFRDDSRA--FKVGGGSRDNFKGSS-WFSLSVGSK 476
            E++                 + RDR RD  R    +   G      G S  F L+VG +
Sbjct: 430 AEDVFAAGTAEPSPEPRARRPASRDRDRDGEREPMTEPRPGRNSGLSGPSVCFRLNVGRQ 489

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           + A+ RWL+PM+CR   I +Q IGAI +    T +E++A
Sbjct: 490 KNADPRWLVPMICRLGKITKQEIGAISIFERDTKIEIAA 528


>gi|218532791|ref|YP_002423607.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218525094|gb|ACK85679.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 568

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/515 (51%), Positives = 354/515 (68%), Gaps = 9/515 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+  + E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  SEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +      +  E++  + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478
           F R++R+ +  PEE++  +  + R   R DSR+    G SR  + + ++WF L++G + +
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           AE R L+PML R   I R  IG+IR+  + T  EV
Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513


>gi|254563809|ref|YP_003070904.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
 gi|254271087|emb|CAX27094.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
          Length = 568

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 266/515 (51%), Positives = 353/515 (68%), Gaps = 9/515 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+  + E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLD-AVPERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +      +  E++  + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR-DNFKGSSWFSLSVGSKQK 478
           F R++R+ +  PEE++  +  + R   R DSR+    G SR  + + ++WF L++G + +
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGASRVGDDEPAAWFRLNLGRRDR 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           AE R L+PML R   I R  IG+IR+  + T  EV
Sbjct: 479 AEPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEV 513


>gi|83313160|ref|YP_423424.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82948001|dbj|BAE52865.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 622

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/510 (50%), Positives = 345/510 (67%), Gaps = 3/510 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ER Y + T+VQEA+L P    +D+LVSAQTGSGKTVA+GLA+A TLL +     PA
Sbjct: 48  KALTERDYTDPTAVQEAVLEPGAAGRDLLVSAQTGSGKTVAYGLAIADTLLGDAFVLEPA 107

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E+R L  GAHIVVGTP
Sbjct: 108 AEPLALIVAPTRELALQVHRELTWLYEHAGARVVSCVGGMDPRAEQRMLGQGAHIVVGTP 167

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+   GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P++RR L+FSAT+   
Sbjct: 168 GRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQERRTLLFSATLPHG 227

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK YQ++A R+ +++  + H+DI+YRAV VA ++ ++A+VN+LRY  +  A+VFC+
Sbjct: 228 IVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNLLRYFESPTAMVFCN 287

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L E  F  VALSGEL Q ER+NALQ +RDGRARVC+ATDVAARGIDLP+
Sbjct: 288 TRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVCVATDVAARGIDLPN 347

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L LVIHAEL  N + L HRSGRTGRAG+KG+SV ++  + +R+A+ L + A V  +W  A
Sbjct: 348 LGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADMLLQTAGVQAIWSGA 407

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           PS E IR+ D +R+L  PL  +    D+  M   LLA+   E IAA  +R++R+ L A E
Sbjct: 408 PSAEDIRKLDQERLLTSPLLSEENTEDDLAMAKALLAERPAEDIAAALVRMYRSHLPAAE 467

Query: 433 EI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           E+    P +        R+        G       GS WF +++G ++ A+ RWL+PM+C
Sbjct: 468 EVFDPGPGNPSREPREHREREPRPPREGKGPGLPGGSVWFRMNIGRQKNADPRWLIPMIC 527

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           R   + +  IGAIR+    T  E+ A   D
Sbjct: 528 RQGKVTKAEIGAIRIFERETRFEIDAGHAD 557


>gi|158424747|ref|YP_001526039.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
 gi|158331636|dbj|BAF89121.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
          Length = 678

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/495 (50%), Positives = 340/495 (68%), Gaps = 9/495 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y + T VQ A+  P+   +D+LVSAQTGSGKTVA+GLA+  TLL  ++R     APLAL 
Sbjct: 109 YTDPTPVQSAVTAPEATGRDMLVSAQTGSGKTVAYGLAVGQTLLGSDERLPAPGAPLALV 168

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           IAPTRELA+QV +EL WLYA+ G  +  C+GG+   RE+R LQ+GAH+VVGTPGRL DH+
Sbjct: 169 IAPTRELALQVHKELAWLYAEAGGRIVACVGGMDPLREKRQLQDGAHVVVGTPGRLRDHL 228

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               L++S L AVVLDEADEMLDLGFR+D+EFILDS+P KR+ L+FSAT+   I  LA+ 
Sbjct: 229 ERGRLDMSQLAAVVLDEADEMLDLGFREDLEFILDSTPGKRQTLLFSATMPRDIAALARQ 288

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           YQ DA+R+ +A +   H+DI+YRAV V+  + ++A+VN+LR+  A  AIVFC+TR +V  
Sbjct: 289 YQHDALRIEVAGQKVGHADIEYRAVRVSPREIEHAVVNLLRFFEAPGAIVFCNTREAVRH 348

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            T  L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDVAARGIDLP L LVIHA
Sbjct: 349 LTATLQERGFSAVALSGELGQNERNLALQALRDGRARVCVATDVAARGIDLPGLGLVIHA 408

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           EL  + E+L HRSGRTGRAGRKG+SV ++P   +R+A++L  EA V   W   P+ E +R
Sbjct: 409 ELPHDAESLQHRSGRTGRAGRKGVSVLLVPPGRRRKADQLLAEARVVPAWSGPPTAEEVR 468

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL 439
             D +R+L DP   +    ++  + + LLA++  +++A   +R++RA L APEE+T    
Sbjct: 469 ALDQERMLSDPQLSELPAAEDANLAEALLAQYSAQELATALVRLYRARLPAPEEVTD--- 525

Query: 440 VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499
             G  R + D RA            G +WF L+VG ++ A+ +WL+P++CR  G+ +  I
Sbjct: 526 -PGEGRQKRDGRAGLG-----ATGTGGAWFRLAVGRRKNADPKWLLPLICRRGGVTKGDI 579

Query: 500 GAIRVQPDLTFVEVS 514
           GAIR+  + T  E++
Sbjct: 580 GAIRIFENETLFEIA 594


>gi|197106923|ref|YP_002132300.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
 gi|196480343|gb|ACG79871.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
          Length = 587

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/524 (48%), Positives = 343/524 (65%), Gaps = 11/524 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F +    +G AL+ RGY   T VQ A+L  +   +D+LVSAQTGSGKTVAFGLA A  LL
Sbjct: 3   FPDTHPALGRALAARGYAEPTPVQAAVLEAEP-GRDLLVSAQTGSGKTVAFGLAAAPALL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF   +APL L IAPTRELA+QV RELEWLYA+T   V  C+GG+   RE+R L  
Sbjct: 62  DGGERFEAPAAPLGLVIAPTRELALQVARELEWLYAETAARVVTCVGGMDARREQRALAA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGRL DH+    L++S L+ VVLDEADEMLDLGFR+D+E ILD++PK+RR  
Sbjct: 122 GCHLVVGTPGRLRDHLERGNLDLSALRVVVLDEADEMLDLGFREDLEEILDATPKERRTF 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I  LA+ YQ+DAVR++    +  H DI+YRAV VA ++ +NA+VN+LRY  
Sbjct: 182 LFSATLAKDIVALARRYQQDAVRIDTVRRDEPHGDIEYRAVRVAPNELENAVVNVLRYFE 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + +A++FC+TR +V      L E  F VVALSGE+ Q+ERS+ALQ +RDG AR C+ATDV
Sbjct: 242 SPSALIFCATREAVRHLYGALRERGFPVVALSGEMGQKERSDALQALRDGHARACVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPDL LVIHAEL  N   LLHRSGRTGRAGRKG+SV ++P   +R+AE L   A
Sbjct: 302 AARGLDLPDLGLVIHAELPVNKAALLHRSGRTGRAGRKGVSVLLVPYTRRRKAEMLLNAA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V   W  APS + IRERD  R+L+DP+  ++   ++  +   +L    PE +AA  +R+
Sbjct: 362 GVDAQWSGAPSADEIRERDQVRMLEDPILTEAPSDEDLALARKVLEGRAPEAVAAALVRL 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGSSWFSLSVGSKQKAEA 481
           +RA L  PEE+         ++ +D     +       N      +WF L VG  + A+ 
Sbjct: 422 YRARLPEPEEMF--------EQVQDRPSGPRERPPREPNVVMGDGAWFRLPVGRSKNADP 473

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           +WL+P++CR   + ++ IG IR+    T  E++AD     R  V
Sbjct: 474 KWLVPLICRLGHVTKKDIGQIRIFDHETKFEIAADAESRFREAV 517


>gi|144899404|emb|CAM76268.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 583

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/511 (50%), Positives = 342/511 (66%), Gaps = 6/511 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +ALS+R Y +LTSVQ A+L+P  R +D+LVSAQTGSGKTVAFGLA+A TLL +   F 
Sbjct: 10  LTQALSQRNYTDLTSVQNAVLDPAARGRDLLVSAQTGSGKTVAFGLAIADTLLGDALAFG 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            AS PLAL +APTRELA+QV REL WLY + G  V  C+GG+    E+R L  GAHIVVG
Sbjct: 70  QASEPLALIVAPTRELALQVQRELTWLYQQAGGQVVACVGGMDPRAEQRMLGRGAHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    L    L+AVVLDEADEMLDLGFR+D+EFIL+++P+ RR L+FSAT+ 
Sbjct: 130 TPGRLRDHLERGALRTGQLRAVVLDEADEMLDLGFREDLEFILEATPQNRRTLLFSATLP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK YQ+D+ R+ +++    H+DI+YRAV VA ++ ++A+VN+LRY  +  A+VF
Sbjct: 190 KLIIALAKRYQRDSFRIAVSAGEHGHADIEYRAVRVAPNEIEHAVVNLLRYFESPGALVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR SV     +L E  F  VALSGEL Q ER+ +LQ +RDGRARVC+ATDVAARGIDL
Sbjct: 250 CNTRESVRHLQAILQERGFAAVALSGELGQNERNQSLQALRDGRARVCVATDVAARGIDL 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P++ LVIHAEL  N   L HRSGRTGRAGRKG+SV ++  + +R+AE   +   V   W 
Sbjct: 310 PNINLVIHAELPQNGPTLQHRSGRTGRAGRKGVSVLLVQLSRRRKAELQLQSVGVQAAWS 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
            APS E IR+ D +R++Q PL       ++ +M   LLA+   E++AA  +R++R+ L A
Sbjct: 370 GAPSAEDIRQLDRERLIQSPLLTGETTEEDLEMARTLLAQRPAEEVAAALVRLYRSQLPA 429

Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG------SSWFSLSVGSKQKAEARWL 484
            EE+              + RA +     R +  G      S WF L+VG ++ A+ RWL
Sbjct: 430 AEELFDPGSGPAPSTGPREPRAPREPREPRGDRPGAMAPGESVWFRLNVGRQKDADPRWL 489

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           +PM+CR   I +Q IG+IR+    T  E+ A
Sbjct: 490 IPMICRHGKITKQEIGSIRIFERETRFEIEA 520


>gi|149185963|ref|ZP_01864278.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21]
 gi|148830524|gb|EDL48960.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21]
          Length = 609

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/510 (50%), Positives = 347/510 (68%), Gaps = 9/510 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P VIGEAL+ RGY +LT VQ A++  + R +D++VSAQTGSGKTVAFGLALA  LL
Sbjct: 3   FETLPPVIGEALAARGYTDLTPVQSAVIEDEARGRDLVVSAQTGSGKTVAFGLALADALL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           AE    +    PLAL IAPTRELA+QV REL WLYA  G+ +A C+GG+   +ERR L+ 
Sbjct: 63  AETANLALVDKPLALVIAPTRELALQVSRELGWLYAGAGLRIATCVGGMDASKERRALRA 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E ILD++P  RR L
Sbjct: 123 GPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFREDLEEILDATPDGRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ +++R+++  ++R H DI Y+A+ V+ S+ +NA+VN+LRYH 
Sbjct: 183 LFSATMPRPIERLAERYQTNSLRLSLVGQDRGHGDISYQAITVSPSEIENAVVNLLRYHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V RF   L E  F VVALSGE SQ ER+ ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCATRDNVRRFHATLQERGFGVVALSGEHSQSERNQALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E+  + E L HRSGRTGRAG+KG +  ++P N +RR E + R A
Sbjct: 303 AARGIDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVEGMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP+ E I ++D  R+L+        +  ++++   ++ K  PE IAA  +R 
Sbjct: 363 KIEAQWMDAPTPEMIHKQDRARLLEMLTAETEFEEHDRELAKEVMDKLSPEDIAASLVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA +  PEE+ P +  +     RD ++A ++    R  F+   WF + VG +Q AEARW
Sbjct: 423 HRAKMPTPEELIPNTPEA-----RDKAKADRI----RPGFEDVVWFKIGVGRRQNAEARW 473

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++P+LCR   I R  IGAIR+    T+ +V
Sbjct: 474 ILPLLCRRGHITRNEIGAIRIGQFETWFQV 503


>gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
 gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
          Length = 587

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/508 (49%), Positives = 339/508 (66%), Gaps = 9/508 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +ALS+RGY  LT VQ A+L   L E+D+LVSAQTGSGKT+A+GLA+A TLL E +RF 
Sbjct: 10  LADALSQRGYTQLTDVQTAVLEEPLVERDLLVSAQTGSGKTIAYGLAMAGTLLGEAERFG 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA  P+AL +APTRELA+QV  EL WLYA TG  +A  +GG+    ERR L +G HIVVG
Sbjct: 70  PADEPVALIVAPTRELAMQVTNELGWLYAGTGAKLATLVGGMDPRAERRRLGDGVHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    L I +LK +VLDEADEML+LGFR+D+EF+L ++P +RR L+FSAT+ 
Sbjct: 130 TPGRLRDHLTRGALQIGNLKTLVLDEADEMLNLGFREDLEFLLQATPAERRTLLFSATLP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + +NYQ++A R+ IA     H+DI+YRAV +A ++ ++A+ N+LR+    +AIVF
Sbjct: 190 KPIIQMTRNYQRNAHRIEIAKGQSGHADIEYRAVRIAPNEVEHAVTNVLRHAEQPSAIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR +V   +  L E  F  V LSGEL Q ER+ A+Q +RDGRARVC+ATDVAARG+DL
Sbjct: 250 CNTRETVRHLSSGLIERGFAAVTLSGELGQAERNQAIQALRDGRARVCVATDVAARGLDL 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL  EA ++  W 
Sbjct: 310 PSLGLVIHADLPSDAETLQHRSGRTGRAGRKGVSVLLVPISRRRKAERLLAEARINAAWG 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
            APS + IR+ D  R++ DP+  +    ++      LL  H  E +AA F+R  RA + +
Sbjct: 370 AAPSADEIRQADEARLVADPVLAEPPSEEDAATAARLLESHSAEALAAAFVRQWRARMPS 429

Query: 431 PEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           PE++   +       GR   R + +  K   G       S WF + VG K  A+ +WL+P
Sbjct: 430 PEDVFDPNFGPDPKGGRSAERGEGKPKKHERGG-----PSVWFHMDVGRKNNADPKWLLP 484

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           +LCR   I R  IGAIR+    T  E+S
Sbjct: 485 LLCRRGKITRDDIGAIRIFDRETKFEIS 512


>gi|221234483|ref|YP_002516919.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
 gi|220963655|gb|ACL95011.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
          Length = 741

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 265/507 (52%), Positives = 346/507 (68%), Gaps = 6/507 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +GY   T VQ A+L  D  ++D+LVSAQTGSGKTVAFGLA A TLL + + F  A+
Sbjct: 13  ALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGDAETFGQAA 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            PLAL IAPTRELA+QV REL WLYA+    V  C+GG+   RE+R L  GAHIVVGTPG
Sbjct: 73  EPLALVIAPTRELAMQVNRELGWLYAEAKAAVINCVGGMDARREQRALNYGAHIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSAT++  I
Sbjct: 133 RLRDHIERGHLDLSKLKVAVLDEADEMLDMGFREDLEFILDAAPAERRTLLFSATLARDI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK YQ DAVR++    N  H DI+YRAV VA ++ ++A+VN+LR+  A  A+VF +T
Sbjct: 193 VELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGALVFANT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG+DLPDL
Sbjct: 253 RESVRSMHAKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARGLDLPDL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V   W  AP
Sbjct: 313 GLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEADWGGAP 372

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
           S ++IRE+D +R+L+DP+F ++   ++  + + +LAK  P +IAA  +R  RA L +PE+
Sbjct: 373 SADSIREKDQERLLEDPIFSEASTEEDVALAEAMLAKRTPVEIAAALIRTRRAKLPSPED 432

Query: 434 I--TPVSLVSGRDRFRDDSRAFKVGG----GSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
           I   P        R R+     + G       R + +GS WF +SVG +  A+ +WL+PM
Sbjct: 433 IYDDPRHGADPGPRSREPREPREFGERPEREPRVSMEGSEWFRISVGRRGNADPKWLIPM 492

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVS 514
           +CR   I ++ IGAIR+    T  E+S
Sbjct: 493 ICRLGHITKKDIGAIRIFDYDTKFEIS 519


>gi|27380673|ref|NP_772202.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110]
 gi|27353838|dbj|BAC50827.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110]
          Length = 650

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/529 (50%), Positives = 353/529 (66%), Gaps = 21/529 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +  AL+ER Y   T VQ A+L  +   +D+LVSAQTGSGKT+A+GLALA  LL
Sbjct: 3   FPTMSPPLARALAERNYDRPTPVQLAVLTEEAAGRDLLVSAQTGSGKTLAYGLALAKDLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF  A APLAL +APTRELA+QV REL WLY      V  C+GG+   RE+R+L  
Sbjct: 63  DGIERFERAGAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQRELAA 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  LAK YQ+ A R+ +A +   H+DI+YRA+ +A +D ++A+VN+LR+  
Sbjct: 183 LFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRIAPADVEHAVVNVLRFFE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A +A+VFCSTR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 APSALVFCSTRDAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVI A+L ++ E + HRSGRTGRAGRKG SV ++P   +RRAE L   +
Sbjct: 303 AARGIDLPSLDLVIQADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLNLS 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  VW  AP  + IR+ D +R ++D LF +    D+  +   LLA+  PE IAA   R+
Sbjct: 363 GIDAVWGTAPQADEIRKLDHER-MKDVLFTEETTADDLVLAQALLAERSPEDIAAALARL 421

Query: 424 HRAGLCAPEEITPVSLVSGR---DRFRDDSRAFKVGGGSRDN---------------FKG 465
           +RA L +PE+I      +GR   DR RD+ RA   GG  R                  +G
Sbjct: 422 YRARLPSPEDIIDPGERAGRPRDDRGRDNVRA--QGGDDRPERARPKSGKSSSKHGMAEG 479

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           S WF  ++G ++ AEARWL+PM+CR  GI++  IGAI++    T  E+S
Sbjct: 480 SVWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEIS 528


>gi|182677259|ref|YP_001831405.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633142|gb|ACB93916.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 577

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/555 (47%), Positives = 357/555 (64%), Gaps = 16/555 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+ERGY   T VQ A+L  +   +D+LVSAQTGSGKT+A+GLAL S LLA+     
Sbjct: 10  LARALTERGYDQPTPVQAAVLEWEDSNRDLLVSAQTGSGKTIAYGLALGSALLADEKPLP 69

Query: 71  PA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A +APL L IAPTRELA+QV REL WLYA  GV +  C+GG+   RERRDL  GAH+VV
Sbjct: 70  VAPNAPLGLIIAPTRELALQVHRELSWLYAYAGVRLVTCVGGMDPRRERRDLDQGAHVVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH+    LN+ +LKAVVLDEADEMLDLGF +D+  +LD++  +RRML+FSAT+
Sbjct: 130 GTPGRLRDHLERGALNLQNLKAVVLDEADEMLDLGFSEDLTTLLDAAAPERRMLLFSATL 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA+ YQ+DA R+++ +    H+DIDYR V V   +  + +VN+LR   A  A V
Sbjct: 190 PRDIVALAQRYQRDAARISVTAPAGGHADIDYRLVRVVPDEIPHVVVNLLRQVEAPGAFV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+TR S      +L+E  F  V LSGELSQ ER+ ALQ +R+GRAR+C+ATDVAARGID
Sbjct: 250 FCNTRESSRHLQALLSERGFSAVLLSGELSQNERNRALQALREGRARICVATDVAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L LVIHA+L ++   L HRSGRTGRAGRKG+SV +   + +RRAE+L +   + +VW
Sbjct: 310 LPNLGLVIHADLPNDAATLQHRSGRTGRAGRKGLSVLLASPSRRRRAEQLLKTLGLPIVW 369

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           +  PS E IR+ D +R+LQDPL +++   D++    +LL  + P+ IAA F R+ R    
Sbjct: 370 QAPPSAEEIRKLDQERLLQDPLLMEAAGEDDQASAAMLLEAYPPQAIAAAFARLLREHRP 429

Query: 430 APEEITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSS---WFSLSVGSKQKAEARWLM 485
           APEE+        RD  F  DSR    G G+R    G +   WF L +G KQ A+ RWL+
Sbjct: 430 APEEV--------RDPGFGPDSRQ---GAGARRGQLGDAGAIWFKLGIGRKQNADPRWLL 478

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
           PM+CR   I+R +IGAI++    T  EV+    +     +++     ++    E PD  G
Sbjct: 479 PMICRRGKISRSAIGAIKIFERETKFEVAIPVAEQFAANIRIPDPEGVRIERAEAPDAHG 538

Query: 546 YKSSGFKSKNSQDGA 560
                 +++  + G+
Sbjct: 539 MAGHAGETQAHRHGS 553


>gi|329890702|ref|ZP_08269045.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568]
 gi|328846003|gb|EGF95567.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568]
          Length = 668

 Score =  488 bits (1257), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/517 (49%), Positives = 341/517 (65%), Gaps = 7/517 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  I   +  AL  +GY   T VQ A+L     E D+LVSAQTGSGKTVAFGLA A TLL
Sbjct: 3   FPAIHPALDRALLNKGYAEPTPVQAAVLE-GHGEADLLVSAQTGSGKTVAFGLAAAPTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++RF     PL LAIAPTRELA+QV  ELEWLYA+ G  +  C+GG+   +E R L  
Sbjct: 62  GEDERFGQPDTPLMLAIAPTRELALQVAAELEWLYAEAGAKIVTCVGGMDARKEARALNY 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAH+VVGTPGRL DHI    L++S  + VVLDEADEMLD+GFR+D+E+ILD +P++RR L
Sbjct: 122 GAHVVVGTPGRLKDHIDRGALDLSAARVVVLDEADEMLDMGFREDLEYILDQAPEERRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I  +AK YQKDAVR++    ++ H+DI+YRA+ +A ++ + A+VN+LRY  
Sbjct: 182 LFSATIARDIAIMAKRYQKDAVRIDTVDRSQPHNDIEYRALRIAPNEIERAVVNVLRYFE 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   +VFCSTR SV      L E  F  VALSGE+ Q+ER+ ALQ +RD RARVC+ATDV
Sbjct: 242 APGVLVFCSTRDSVRHLQASLVERGFASVALSGEMGQRERNEALQALRDRRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPDL LVIHAEL  N   +LHRSGRTGRAG+KG+SV ++P + +R+AE L   A
Sbjct: 302 AARGLDLPDLGLVIHAELPINKATMLHRSGRTGRAGKKGISVLLVPHSRRRKAEMLLGSA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  VW  AP+ + IR +D QR+L  P+F +    ++  +V+ L+ +  P+ +A   L +
Sbjct: 362 GVEAVWSGAPTADEIRAQDEQRLLAAPVFAEEGADEDAGLVEKLVKERTPDDLARALLVL 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRD------DSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            R  L APE++T       R   +D      D+ A     G R      SWF L +G  +
Sbjct: 422 LRKNLPAPEDLTDPGEGPQRKPRKDRDAAGGDAYAPAPWPGDRLQPDEVSWFRLDIGRNR 481

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            A+ +WL+P++CR  GI +Q IG+IR  P+ T  EV+
Sbjct: 482 NADPKWLIPLICRIGGITKQQIGSIRTFPEETRFEVA 518


>gi|258543522|ref|YP_003188955.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634600|dbj|BAI00576.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637656|dbj|BAI03625.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640710|dbj|BAI06672.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643765|dbj|BAI09720.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646820|dbj|BAI12768.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649873|dbj|BAI15814.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652863|dbj|BAI18797.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655917|dbj|BAI21844.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 586

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/523 (50%), Positives = 346/523 (66%), Gaps = 19/523 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N P  +  AL+ RG+   T+VQ A+L  D + +D+LVSA+TGSGKTVAFGL LA  LL
Sbjct: 3   FQNAPAPLARALAARGFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P+ AP+AL IAPTRELA+QV  ELEWLYA+TG  +  C+GG+   +E R L +
Sbjct: 63  NDAGRCVPSGAPIALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALAS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRLCDH+R   L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L
Sbjct: 123 GCHIVVGTPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I  LA+ YQ+DA+R++    N  H+DI YRAVL    D    +VN+LR   
Sbjct: 183 LFSATIARDIAALARRYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLME 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC TR +V +   +L E  F  VA+SG+L Q ERS A++ +R G+ARVC+ATDV
Sbjct: 243 SSAAIVFCHTREAVRQLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+PDL LVIHA L SNP  LLHRSGRTGRAG+KG  V ++P   +R AERL + A
Sbjct: 303 AARGIDIPDLGLVIHASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIAAGFL 421
            V+  W  AP+  AI   DA+R+L  P        D   + ++  L+A+H PE++AA  +
Sbjct: 363 KVTAEWSGAPTPAAIATADAERLLGAPFLSAPAPEDAETQTLIGRLVAEHTPEQLAAALV 422

Query: 422 RIHRAGLCAPEE---ITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +    L AP     ITP +  + R+R      R+  RA  + G          WF LSV
Sbjct: 423 GLWHKSLPAPVSVRVITPDARRAPRERDPNRPVRERERAPAMDG---------KWFRLSV 473

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           G + +A+ +WL+PMLCR   I +Q IG+IR+  D T VE+S D
Sbjct: 474 GREDRADPKWLVPMLCRLGNIKKQDIGSIRITQDHTLVEISPD 516


>gi|103487316|ref|YP_616877.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977393|gb|ABF53544.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 610

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/519 (47%), Positives = 345/519 (66%), Gaps = 15/519 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE++  V+ +AL+ RGY  LT VQ  +   + + +D+LVSAQTGSGKTVAFGLA+A  L+
Sbjct: 3   FEHLSPVLADALAARGYEALTPVQLQVTEAEAKGRDLLVSAQTGSGKTVAFGLAMADELI 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E+ R   A++PLAL +APTRELA+QV REL WLYA+ G  +A C+GG+   +ERR L  
Sbjct: 63  -EDGRLPFATSPLALIVAPTRELALQVSRELGWLYARAGARIATCVGGMDASKERRALNQ 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL DH+    L+++ L+  VLDEADEMLD+GFRDD+E ILD++P+ RR L
Sbjct: 122 GVQIVVGTPGRLRDHLERGALDLAALRVAVLDEADEMLDMGFRDDLEEILDATPETRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   I  LAK YQ+DA+R++   E+R H DI Y+AV VA +D + A+VN+LR H 
Sbjct: 182 LFSATIPKPIVQLAKRYQRDALRISTVGEDRGHGDIAYQAVTVAPADIEGAVVNLLRLHD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ A++FC+TR +V R    L E  F  VALSGE SQ ER+ ALQ +RD RA+VC+ATDV
Sbjct: 242 AETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNQALQALRDRRAKVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E+  + E L HRSGRTGRAG+KG +V ++P   +RR + + R A
Sbjct: 302 AARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGMLRGA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            ++  W  AP+   +R++D +R+++  L     + ++  +   L+A+  PE IAA  +R 
Sbjct: 362 RINAEWMDAPTAADVRQKDQERLIEKLLAPVEHEPEDLALAQRLMAERTPEDIAASLVRA 421

Query: 424 HRAGLCAPEEITPVSLVSGRD---------RFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           HRA +  PE++   +   GRD         RF    R    GG  R+ F+ + WF L++G
Sbjct: 422 HRALMPPPEDLLD-NGPRGRDATGRPERGERFERPER----GGDRREGFEDAVWFRLNIG 476

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             Q A+ RW++P+LCR   +++  IGAIR+ P  T   +
Sbjct: 477 RHQNADPRWILPLLCRRGHVSKNEIGAIRIGPKETMFNI 515


>gi|77462023|ref|YP_351527.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386441|gb|ABA77626.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 602

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/473 (52%), Positives = 327/473 (69%), Gaps = 11/473 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDLS-DEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
           +      R   +          R  F  + W++++VG   +AEARWL+P   R
Sbjct: 436 APPEPSQRAPRE----------RGEFGEAVWYAVAVGHTGRAEARWLLPQDLR 478


>gi|170749797|ref|YP_001756057.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656319|gb|ACB25374.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 583

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 263/503 (52%), Positives = 336/503 (66%), Gaps = 6/503 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  ALS+RGY + T VQ A+L      +D+LVSAQTGSGKTVA+GLA+AS L+
Sbjct: 3   FPTLPAPLARALSDRGYADPTPVQAAVLEAAAGSRDLLVSAQTGSGKTVAYGLAMASMLI 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E DR  P +APLAL IAPTRELA+QV REL WLY   G  VA C+GG+   RE R L  
Sbjct: 63  GEADRLPPPAAPLALVIAPTRELALQVQRELSWLYGPAGGRVAACVGGMDPRRESRMLAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ + L+AVVLDEADEMLDLGFR+DIEFIL ++P +R   
Sbjct: 123 GTHIVVGTPGRLRDHLERRNLDPTALRAVVLDEADEMLDLGFREDIEFILSATPPERATY 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ+DA+R+ I  E R H+DI YRAV +   + ++ ++N+LR   
Sbjct: 183 LFSATLPKGIEALAERYQRDALRLAIKGETRGHADIAYRAVRIMPRETEHVVLNLLREAD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK AIVFC+TR +V      L E  F VVALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 AKTAIVFCNTRNAVRHLQASLTERGFSVVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L  + E + HRSGRTGRAGRKG SV +IP + +RRAE++F  A
Sbjct: 303 AARGIDLPSLSLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVLLIPNSRRRRAEQMFAIA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   PS + IR  D +R+L DPLF +    ++  + + LLA   PE++AA   R+
Sbjct: 363 KVSPEWSGPPSADEIRRLDGERMLSDPLFAEPPAEEDVALAETLLAGKSPEELAALLARV 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKGSS-WFSLSVGSKQKAEA 481
           +R  L APEE++      G  R  R +   +      R    G + WF L++G +  A+ 
Sbjct: 423 YRTRLPAPEEVS----DPGEGRAPRGERPPYDPMDPERIAAMGPAVWFRLNLGRRDNADP 478

Query: 482 RWLMPMLCRSSGINRQSIGAIRV 504
           R L+PML R  GI RQ IGAIR+
Sbjct: 479 RRLLPMLTRRGGIGRQEIGAIRI 501


>gi|329113602|ref|ZP_08242382.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
 gi|326697124|gb|EGE48785.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
          Length = 584

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 272/574 (47%), Positives = 362/574 (63%), Gaps = 17/574 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N P  +  AL+ RG+   T+VQ A+L  D + +D+LVSA+TGSGKTVAFGL LA  LL
Sbjct: 3   FQNAPAPLARALAARGFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P+ AP+AL IAPTRELA+QV  ELEWLYA+TG  +  C+GG+   +E R L +
Sbjct: 63  NDAGRCVPSGAPIALVIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALAS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRLCDH+R   L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L
Sbjct: 123 GCHIVVGTPGRLCDHLRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I  LA+ YQ+DA+R++    N  H+DI YRAVL    D    +VN+LR   
Sbjct: 183 LFSATIARDIAALARRYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLME 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFC TR +V +   +L E  F  VA+SG+L Q ERS A++ +R G+ARVC+ATDV
Sbjct: 243 SSAAIVFCHTREAVRQLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+PDL LVIHA L SNP  LLHRSGRTGRAG+KG  V ++P   +R AERL + A
Sbjct: 303 AARGIDIPDLGLVIHASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIAAGFL 421
            V+  W  AP+  AI   DA+R+L  P        D   + ++  L A+H PE++ A  +
Sbjct: 363 KVTAEWSGAPTPAAIATADAERLLAAPFLSAPAPEDAETQTLISRLAAEHTPEQLGAALV 422

Query: 422 RIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +    L AP  +  ++  + R   R RD +R  +     R       WF LSVG + +A
Sbjct: 423 GLWHKSLPAPVSVRVLTPDARRAAPRERDPNRPVR--ERERAPAMDGKWFRLSVGREDRA 480

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----------GVDLLRRTVKLDK 529
           + +WL+PMLCR   I +Q IG+IR+  D T VE+S D            D    TV+   
Sbjct: 481 DPKWLVPMLCRLGNIKKQDIGSIRITQDHTLVEISPDKAEQFASCASATDPDEITVEPAA 540

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKS-KNSQDGATK 562
             +    GG +P +   K  G +S    ++GA+K
Sbjct: 541 APRKGGGGGSRPAYADRKPKGGRSFAPRREGASK 574


>gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
          Length = 537

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/421 (55%), Positives = 310/421 (73%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQVKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 L 421
           L
Sbjct: 421 L 421


>gi|126738873|ref|ZP_01754569.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126720054|gb|EBA16761.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 463

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/431 (58%), Positives = 317/431 (73%), Gaps = 9/431 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  AL  RGY +LT VQEA+ +PDL   D+LVSAQTGSGKTV FGLA+A T+L E+
Sbjct: 33  LKQTLSLALERRGYTSLTPVQEAVTDPDLGTGDLLVSAQTGSGKTVGFGLAIADTVLGED 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DRF+ A+APLAL IAPTRELA+QV REL WLY + G VVA C+GG+ +  ERR L  GAH
Sbjct: 93  DRFAAAAAPLALVIAPTRELALQVKRELAWLYGEAGAVVASCVGGMDMRDERRALDRGAH 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DHI    +++S L+AVVLDEADEMLDLGFR+D+EFIL  +P++R+ L+FS
Sbjct: 153 LVVATPGRLRDHIMRGSIDLSDLRAVVLDEADEMLDLGFREDLEFILGEAPEERQTLLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  LA++YQ+DA R++  +E  QHSDIDY+A+LV+  D DNAI+N+LR++ A N
Sbjct: 213 ATVPPAIEHLARSYQRDAKRISTVAETSQHSDIDYQAMLVSQRDGDNAIINVLRFYEAPN 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC+TRA V+R    L+   F VVALSGELSQ ERS+ALQ MRDGRARVC+ATDVAAR
Sbjct: 273 AIVFCNTRAMVNRLLSRLSNRGFAVVALSGELSQAERSHALQAMRDGRARVCVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDLP+LELVIHAEL S+ E LLHRSGRTGRAGRKG+S  V+    +++AERL + A + 
Sbjct: 333 GIDLPNLELVIHAELPSSHETLLHRSGRTGRAGRKGVSALVVSPKSRKKAERLLKMAKLH 392

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
             W  APS EA+R +D +R+L DP + +     E++M+  L     P   A G       
Sbjct: 393 ANWGGAPSAEAVRSKDTERMLNDPSWTEDQSSGEEEMIAQLT---QPSPRATGRW----- 444

Query: 427 GLCAPEEITPV 437
            L AP E  P+
Sbjct: 445 -LPAPVECQPL 454


>gi|326537854|gb|ADZ86069.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis
           M5-90]
          Length = 575

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/541 (46%), Positives = 352/541 (65%), Gaps = 35/541 (6%)

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +AFGLA+A+T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG
Sbjct: 1   MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  ERR L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EF
Sbjct: 61  MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL  +P+ RR LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +R
Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+AI+N L Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MR
Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P +
Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R AERL   A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++
Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360

Query: 412 DPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG------- 458
            PE+IA+ FL    A   A EE++  PV  V G+    DRF    R  +           
Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420

Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              R+      WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A 
Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480

Query: 517 GVDLLRRTVKLDKGIQLKYL---------GGE----------KPDFRGYKSSGFKSKNSQ 557
             D  R++V  ++G   K L         GG+          KP    +K  GF+  +  
Sbjct: 481 KADEFRQSVA-ERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539

Query: 558 D 558
           D
Sbjct: 540 D 540


>gi|225626665|ref|ZP_03784704.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|254709276|ref|ZP_05171087.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           B2/94]
 gi|256030799|ref|ZP_05444413.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           M292/94/1]
 gi|256158820|ref|ZP_05456681.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti M490/95/1]
 gi|256254205|ref|ZP_05459741.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti B1/94]
 gi|260169703|ref|ZP_05756514.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella sp. F5/99]
 gi|261221354|ref|ZP_05935635.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261316783|ref|ZP_05955980.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261759240|ref|ZP_06002949.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265987854|ref|ZP_06100411.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265997314|ref|ZP_06109871.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225618322|gb|EEH15365.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|260919938|gb|EEX86591.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261296006|gb|EEX99502.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261739224|gb|EEY27220.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262551782|gb|EEZ07772.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|264660051|gb|EEZ30312.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 575

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/541 (46%), Positives = 350/541 (64%), Gaps = 35/541 (6%)

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +AFGLA+A+T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG
Sbjct: 1   MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  ERR L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EF
Sbjct: 61  MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL  +P+ RR LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +R
Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+AI+N L Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MR
Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P +
Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R AERL   A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++
Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360

Query: 412 DPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR----DRFRDDSRAFKVGGG------- 458
            PE+IA+ FL    A   A EE++  PV  V G+    DRF    R  +           
Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420

Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              R+      WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A 
Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480

Query: 517 GVDLLRRTVKLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQ 557
             D  R++V  ++G   K L                   G  KP    +K  GF+  +  
Sbjct: 481 KADEFRQSVA-ERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539

Query: 558 D 558
           D
Sbjct: 540 D 540


>gi|188584150|ref|YP_001927595.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347648|gb|ACB83060.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 567

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 265/517 (51%), Positives = 349/517 (67%), Gaps = 13/517 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILN--PDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +  AL+ER Y   T VQ+A+L+  PD   +D+LVSAQTGSGKTVAFGLA+A T
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAAPD---RDLLVSAQTGSGKTVAFGLAIAGT 59

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   +   P +APLAL IAPTRELA+QV REL WLYA+TG  V  C+GG+   RE R L
Sbjct: 60  LLGPEEALPPPAAPLALVIAPTRELALQVQRELTWLYAQTGARVVPCVGGMDPRREARAL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G HIVVGTPGRL DH+    L    L+AVVLDEADEMLD+GFR+D+EFIL ++P+ RR
Sbjct: 120 EAGVHIVVGTPGRLRDHMERGRLVTEGLRAVVLDEADEMLDMGFREDLEFILAATPEDRR 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VN+LRY
Sbjct: 180 TLLFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREIEHAVVNVLRY 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+AT
Sbjct: 240 VDAPVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F 
Sbjct: 300 DVAARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPARRRRAEQMFA 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLF----LDSIQGDEKKMVDVLLAKHDPEKIA 417
            A VS  W   P+ + IR  D +R++ DPL      +  +  E+   + L+ +  PE++A
Sbjct: 360 IAKVSPDWSGPPNADEIRTLDRERMMSDPLLAEPETEEEREWERDWAEALMERFPPERLA 419

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-FKVGGGSRDNFKGSSWFSLSVGSK 476
           A F R++R+ +  PEE++  +  + R   R DSR+   VG       + ++WF L++G +
Sbjct: 420 AAFARLYRSRIPVPEEVSDPAYETSR---RPDSRSGVPVGAPRVGEDEPAAWFRLNLGRR 476

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +AE R L+PML R   I R  IGAIR+  + T  EV
Sbjct: 477 DRAEPRRLLPMLTRRGQIGRGDIGAIRIFDNETTFEV 513


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/508 (49%), Positives = 336/508 (66%), Gaps = 23/508 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE---------KDVLVSAQTGSGKTVAFGLALASTLLA 64
           ALSERGY   T VQ A+L   L E         +D+LVSAQTGSGKTVAFGLALA TLL 
Sbjct: 13  ALSERGYAEPTPVQAAVLEAALSEDGSVDAESGRDLLVSAQTGSGKTVAFGLALAPTLLG 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E +RF+   APLAL IAPTRELA QV  EL WLYA+TG  +  C+GG+    ERR L+ G
Sbjct: 73  EAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQTGARIVSCVGGMDPKVERRALERG 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGRL DH+    L++S  +AVVLDEADEMLD+GF++D+ FILD++P  RR LM
Sbjct: 133 AHIVVGTPGRLRDHLERGALDLSEARAVVLDEADEMLDMGFQEDLTFILDAAPPTRRTLM 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  LAK YQ+DA+R++  + N+ H+DI+Y+A+  A ++ + A+VN+LRY  A
Sbjct: 193 FSATLARDIVQLAKTYQRDAIRIDTVAGNKSHADIEYKAIRCAPNEIELAVVNVLRYFEA 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF +TR  V   T  L E  F VV LSGEL+Q  RS ALQ +RDG ARVC+ATDVA
Sbjct: 253 PGALVFANTRERVKHLTASLRERGFSVVGLSGELTQSARSEALQALRDGHARVCVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+DLPDL LVIHAE+  N   LLHRSGRTGRAG+KG+SV ++    +R+ E + + A 
Sbjct: 313 ARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLLVSYTRRRKVELMLQSAA 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLRI 423
           +   W   PS E I E+D +R+L DP     ++  E  ++  +LL +  PE++AA  +R+
Sbjct: 373 IVAEWSGPPSAEMILEKDRERLLADPALTAPVEDAEALELGRLLLERTTPEQVAASLIRL 432

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NF-KGS--SWFSLSVGSK 476
           +R  L APE+      V   DR +      K   G  D    +F +G   +WF +++G  
Sbjct: 433 YRQKLPAPED------VYDDDRMKRQQETGKNDRGQTDAPFQDFARGGEMAWFRINIGRD 486

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRV 504
           + A+ +WL+P +CR   + ++ IG+I++
Sbjct: 487 KNADPKWLLPTICRIGHVTKRDIGSIKI 514


>gi|296535750|ref|ZP_06897913.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
 gi|296263919|gb|EFH10381.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
          Length = 411

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 237/408 (58%), Positives = 292/408 (71%), Gaps = 2/408 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P+ +  AL+ERGY   T+VQ A+L P+   +D+LVSAQTGSGKTVAFGLALA  LL
Sbjct: 3   FPVMPEALLRALTERGYAEPTTVQAAVLEPETAGRDLLVSAQTGSGKTVAFGLALAPELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E +R  PA APLA+ +APTRELA+QV  EL WLYA  G  V  C+GG+    ERR L  
Sbjct: 63  GEAERMPPAGAPLAIVVAPTRELALQVRAELSWLYAAAGGRVVSCVGGMDPLAERRALAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L    L+AVVLDEADEMLDLGFR+++E IL ++P++RR L
Sbjct: 123 GAHIVVGTPGRLCDHLDRGNLRPEALRAVVLDEADEMLDLGFREELEMILGAAPEERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ P I  LA ++Q+DA+R++  +E  QH DI Y+AV VA  D + A+VN+LR   
Sbjct: 183 LFSATVPPEIERLAGHFQRDALRISAKAEGGQHRDIAYKAVQVAPQDTERAVVNLLRLSD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFCSTRA+V+R    LAE  F  VALSGELSQ ERS ALQ +RDGRA+VC+ATDV
Sbjct: 243 SLRAIVFCSTRAAVTRLQANLAERGFSAVALSGELSQAERSRALQALRDGRAQVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLPDL LVIHAEL   PE +LHRSGRTGRAGRKG+SV V+P N +R AERL   A
Sbjct: 303 AARGIDLPDLGLVIHAELPKEPETMLHRSGRTGRAGRKGISVLVVPPNRRRTAERLLMAA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLA 409
            V   W PAP+ E IR +DA+R+      L  +    D+  + + LLA
Sbjct: 363 RVQAEWGPAPAAEEIRAKDAERLASQAQALLAEEASADDLAVAEALLA 410


>gi|153005772|ref|YP_001380097.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029345|gb|ABS27113.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 585

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 257/587 (43%), Positives = 355/587 (60%), Gaps = 20/587 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P ++  AL  RGY+  TSVQ A+L P  R +D+LVS++TGSGKTVAFGLA
Sbjct: 1   MNTFSSVGAHPALL-PALDRRGYLEPTSVQAAVLEPAHRGQDLLVSSRTGSGKTVAFGLA 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           LA TLL + D F  A  P AL +APTRELAVQV REL WL+A  G  VA C+GG+   RE
Sbjct: 60  LAETLLGDADAFGEAGPPGALVVAPTRELAVQVQRELAWLFADAGGRVASCVGGMDPRRE 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L  G H+VVGTPGRL DH+    L++S L+A+VLDEADEMLD+GFR+++E +L ++P
Sbjct: 120 ARALAEGTHVVVGTPGRLVDHLERGALDLSALRALVLDEADEMLDMGFREELEKLLGAAP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             RR ++FSAT+   I  LAK Y +DA R+        H+DI YRA +VA  +R++A+VN
Sbjct: 180 PDRRTVLFSATLPRPILELAKRYTRDASRIAATPAGEAHADIAYRAHVVAPREREHAVVN 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR     +A+VF +TR +V      L E  F+VVA+SGEL+Q ER+ AL+ +RDGRARV
Sbjct: 240 VLREAEPPSALVFRATREAVQHTAVSLGERGFEVVAISGELTQAERTRALKSLRDGRARV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+DLP + LV+HA+L  + E L HRSGRTGRAGRKG++V +     + R E
Sbjct: 300 LVATDVAARGLDLPGIALVLHADLPRDAEALQHRSGRTGRAGRKGVAVLLAAPPERYRLE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-HDPEKI 416
           R+ R+A V   W P P+ EAIR  DA+R+  D + L     +E       LA+     ++
Sbjct: 360 RMLRDAGVRAEWTPVPTAEAIRAGDAERLAADVVALAGDAAEEDLAAARRLAESRSALEL 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A   +R  R+   APEE+   +  +     R + RA + G  +      + WF LS+G  
Sbjct: 420 AVALVRRDRSRRPAPEELPETARAAREVPARAEKRAPRAGPPA-----NAVWFRLSLGRA 474

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK------LDKG 530
           ++A+ RW++P+LCR  G+ R  IG I +QP+ T  EV+AD      R  +       D  
Sbjct: 475 RQADPRWVLPLLCRRGGVTRDEIGKIVIQPEETRFEVAADAAQRFLRAARRPDPRMPDAR 534

Query: 531 IQL----KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           I+L       G  +   R  ++ G +     DG     +R   A+K 
Sbjct: 535 IELLGTNPRAGEPRHAPRPVRAEGARRHERADGEPAPPRRSAPAAKR 581


>gi|218658884|ref|ZP_03514814.1| ATP-dependent RNA helicase protein [Rhizobium etli IE4771]
          Length = 329

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/329 (67%), Positives = 262/329 (79%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+ DL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDSDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRNALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLL 329
           TDVAARGIDLP L+LVIHA+L +NPE LL
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLL 329


>gi|217976419|ref|YP_002360566.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217501795|gb|ACK49204.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 505

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/411 (55%), Positives = 286/411 (69%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++    +  AL+ER Y   T VQ A L P    +D+LVSAQTGSGKTVA+GLA+A  L 
Sbjct: 3   FQSSNPALARALAERNYDQATDVQTAALEPAAAGRDLLVSAQTGSGKTVAYGLAIAEDLF 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A       A  PLAL I PTRELA+QV RELEWLY   G  V  C+GG+   RERRDL  
Sbjct: 63  AGAPALGAAGEPLALIITPTRELALQVQRELEWLYHYAGARVISCVGGMEPRRERRDLAA 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DHI    L +S LKAVVLDEADEMLDLGFR+D+EFIL+++P +RR L
Sbjct: 123 GAHIVVGTPGRLRDHIERGALIVSRLKAVVLDEADEMLDLGFREDLEFILETTPPERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I TLAK +QK+A+R+ +A + R H+DI+YRA+ VA ++ ++A+VN+LR   
Sbjct: 183 LFSATLPKGIATLAKRFQKNALRIEVAGKERGHADIEYRAMRVAPNEIEHAVVNVLRMID 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC+TR +V      L E  F    LSGELSQ ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 PPGAIVFCNTREAVRHLHAFLVERGFSAALLSGELSQNERNHALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L  + E L HRSGRTGRAGRKG+S+ ++P   +RRAERL  EA
Sbjct: 303 AARGIDLPGLALVIHADLPHDAEILQHRSGRTGRAGRKGISIILVPSARKRRAERLLMEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +   W   P+ E IR  D +R+L+DPL  + I  ++ ++   LL +  PE
Sbjct: 363 GLQPSWSGPPTAEEIRRLDHERLLRDPLLDEPIGEEDSEIARALLDERSPE 413


>gi|86159465|ref|YP_466250.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775976|gb|ABC82813.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 565

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/505 (46%), Positives = 321/505 (63%), Gaps = 6/505 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVAFGL L  +LL +   F 
Sbjct: 12  LARALERRGYSEPTAVQEAVFTPGLRGRDLLVSSATGSGKTVAFGLVLGGSLLGDAPAFG 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA  PL L +APTRELA+QV REL WL A+    V  C+GG+   RE R L +GAH+VVG
Sbjct: 72  PAGLPLGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR +MFSAT+ 
Sbjct: 132 TPGRLLDHHRRGALDLSDLRALVLDEADEMLDMGFRDELEAILAAAPEGRRTIMFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ Y  D  RV        H+DI +RA LVA S+R+ A+VN+LR      A+VF
Sbjct: 192 KPIVELARRYTTDPARVAATPAGGAHADIAFRAHLVAPSERELAVVNVLRALEPPRALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +ATDVAARG+DL
Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ R+A V V W 
Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371

Query: 371 PAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           P P+ E+IR  D  R+  +   L + +  DE+     LL+  DP  +AA  +R  RA L 
Sbjct: 372 PVPAAESIRAADDARLAGEVDALSEDVSDDERAAAARLLSGRDPLLVAAALVRTTRARLP 431

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           +PE++T  +  + +       RA + G  +       +WF +++G ++KA+ +WL+P+LC
Sbjct: 432 SPEDLTETAHAARQAPAPRADRAPRRGPPAE-----VAWFRINIGREKKADPKWLLPLLC 486

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVS 514
           R  G+ R  IG I +    T  EV+
Sbjct: 487 RRGGVTRDEIGKIVIGAAETRFEVA 511


>gi|220918339|ref|YP_002493643.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956193|gb|ACL66577.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 565

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/509 (46%), Positives = 320/509 (62%), Gaps = 16/509 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVA+GL L  +LL +   F 
Sbjct: 12  LARALERRGYTEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGGSLLGDAPAFG 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA AP  L +APTRELA+QV REL WL A+    V  C+GG+   RE R L +GAH+VVG
Sbjct: 72  PAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR ++FSAT+ 
Sbjct: 132 TPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGRRTILFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ Y  D  RV        H+DI YRA +VA S+R+ A+VN+LR      A+VF
Sbjct: 192 KPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLRALEPPRALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +ATDVAARG+DL
Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ R+A V V W 
Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371

Query: 371 PAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           P P+ EAIR  D  R+    D L  D+   DE+     LL+  DP  +AA  +R  RA L
Sbjct: 372 PVPAAEAIRASDEARLAGEVDALSEDATD-DERAAAARLLSGRDPVLVAAALVRSTRARL 430

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQKAEARWL 484
            +PE++ P ++ + R              G R   +G     +WF +++G ++KA+ +WL
Sbjct: 431 PSPEDL-PETVHAARQ--------APSPRGERAPRRGPPAEVAWFRINLGREKKADPKWL 481

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +P+LCR  G+ R  IG I +    T  EV
Sbjct: 482 LPLLCRRGGVTRDEIGKIVIGATETRFEV 510


>gi|197123541|ref|YP_002135492.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173390|gb|ACG74363.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 565

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/509 (46%), Positives = 320/509 (62%), Gaps = 16/509 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVA+GL L  +LL +   F 
Sbjct: 12  LARALERRGYSEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGGSLLGDAPAFG 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA AP  L +APTRELA+QV REL WL A+    V  C+GG+   RE R L +GAH+VVG
Sbjct: 72  PAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARALSDGAHLVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ RR ++FSAT+ 
Sbjct: 132 TPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGRRTILFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ Y  D  RV        H+DI YRA +VA S+R+ A+VN+LR      A+VF
Sbjct: 192 KPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLRALEPPRALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +ATDVAARG+DL
Sbjct: 252 RATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVATDVAARGLDL 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ R+A V V W 
Sbjct: 312 PGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERMLRDAGVRVEWA 371

Query: 371 PAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           P P+ EAIR  D  R+    D L  D+   DE+     LL+  DP  +AA  +R  RA L
Sbjct: 372 PVPAAEAIRASDEARLAGEVDALSEDATD-DERAAAARLLSGRDPVLVAAALVRSTRARL 430

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQKAEARWL 484
            +PE++ P ++ + R              G R   +G     +WF +++G ++KA+ +WL
Sbjct: 431 PSPEDL-PETVHAARQ--------APSPRGERAPRRGPPAEVAWFRINLGREKKADPKWL 481

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +P+LCR  G+ R  IG I +    T  EV
Sbjct: 482 LPLLCRRGGVTRDEIGKILIGATETRFEV 510


>gi|218673952|ref|ZP_03523621.1| ATP-dependent RNA helicase protein [Rhizobium etli GR56]
          Length = 499

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/382 (51%), Positives = 269/382 (70%), Gaps = 8/382 (2%)

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +F      AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LRY+ 
Sbjct: 27  VFGQPCRRAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLRYYE 86

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIATDV
Sbjct: 87  ATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIATDV 146

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + +R+AERL   A
Sbjct: 147 AARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLSARRKAERLLENA 206

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LL+ H  EK+AA FLR+
Sbjct: 207 GISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAFLRL 266

Query: 424 HRAGLCAPEEITPVSLVSGRDRF-RDDSRAF-KVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +R    APE++  V++  G  R  RD++  +     G R++F  S+WFS+SVG KQ AE 
Sbjct: 267 YRTNRSAPEDLIEVTVQDGGSRKRRDNAEPYAPAQKGPREDFGPSAWFSVSVGRKQNAEP 326

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLG 537
           RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   D  +  +     L++GI++  L 
Sbjct: 327 RWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASADSFQEALGPNKTLERGIRVTRLS 386

Query: 538 GEKPDF-RGYKSSGFKSKNSQD 558
           G  PDF R      +  K+S+D
Sbjct: 387 G-TPDFSRAAAQKPYAGKSSRD 407


>gi|73760070|dbj|BAE20150.1| ATP-dependent RNA helicase-like protein [Ketogulonicigenium
           vulgare]
          Length = 367

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/333 (58%), Positives = 251/333 (75%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +NI   +  ALS+RGY  LT+VQ+A+L P+   +D+LVSAQTGSGKTVAFG+A+A  LL 
Sbjct: 27  QNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDLLG 86

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +++     + P+AL IAPTRELA+QV +EL WLYA  G  +A C+GG+    ERR L   
Sbjct: 87  DDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALARL 146

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGRL DHI   GL++S L+  VLDEADEMLDLGFRDD+++IL ++P+ RR LM
Sbjct: 147 PQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRTLM 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+++Q DA+R+    E +QH+DI Y+A+ V + DR+NAI N+LR++ +
Sbjct: 207 FSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFYES 266

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+FC TRA+V+     ++   F+VVALSGELSQQER+NALQ +RDGRA VCIATDVA
Sbjct: 267 RTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATDVA 326

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           ARGIDLP LELVIH +L +N E LLHRSGRTGR
Sbjct: 327 ARGIDLPGLELVIHYDLPTNAETLLHRSGRTGR 359


>gi|92109376|ref|YP_571664.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91802458|gb|ABE64832.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
          Length = 340

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 152/280 (54%), Positives = 196/280 (70%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P  +  AL+ER Y   T VQ A+L  +  ++D+L SAQTGSGKTVA+GLA+A  LL
Sbjct: 3   FPTTPPPLARALAERSYDQPTPVQIAVLADEAVDRDLLDSAQTGSGKTVAYGLAIAKNLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + F  A+ P AL +APTRELA+QV REL WLY      V  C+GG+   RE+R+L  
Sbjct: 63  GGVEWFQRATMPRALIVAPTRELALQVHRELAWLYQYANGRVVSCVGGMDPRREQRELAA 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFRDD+EFIL ++P+ RR L
Sbjct: 123 GAHIVVGTPGRLCDHLRRGRLDVSDLKAVVLDEADEMLDLGFRDDMEFILKTTPEMRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSA +   I  LAK YQ+ A R+ +A +   H+DI+YRA+ +  SD D+A+VN+LR+  
Sbjct: 183 LFSAALPRGIVVLAKRYQQRAFRIEVADDEGGHADIEYRAIRIVASDVDHAVVNVLRFFE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + +A+VFC+TR +V      L E  F VVALSGEL+Q ER
Sbjct: 243 SPSALVFCNTRNAVRHLQATLLERGFSVVALSGELTQNER 282


>gi|307941463|ref|ZP_07656818.1| ATP-dependent RNA helicase DeaD [Roseibium sp. TrichSKD4]
 gi|307775071|gb|EFO34277.1| ATP-dependent RNA helicase DeaD [Roseibium sp. TrichSKD4]
          Length = 258

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/259 (57%), Positives = 183/259 (70%), Gaps = 1/259 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M    ++PQ +  AL ++GY  LT VQE IL     E D+LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEVSSLPQALQAALEKKGYETLTPVQETILKEAPPEADLLVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL E+D    A+AP+ALAIAPTRELA+QV  EL WLY + G  +  C+GG+    ERR 
Sbjct: 61  TLLGEDDNLGQANAPIALAIAPTRELALQVKEELTWLYREAGATLTSCVGGMDPRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRL DH+    L++S +KAVVLDEADEMLD+GFR+D+EFILD++P+ R
Sbjct: 121 LDRGAHIVVGTPGRLRDHLERGALDLSQIKAVVLDEADEMLDMGFREDLEFILDAAPETR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +QKDAVR++  S   QH DIDY A  V  S+R+NA++N+LR
Sbjct: 181 RTLMFSATVPKPIAELAKRFQKDAVRLSTISAKDQHVDIDYIAHPVVSSERENALINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSR 259
               K     CSTR +V R
Sbjct: 241 CMKRKIH-HLCSTREAVKR 258


>gi|162453584|ref|YP_001615951.1| hypothetical protein sce5308 [Sorangium cellulosum 'So ce 56']
 gi|161164166|emb|CAN95471.1| deaD3 [Sorangium cellulosum 'So ce 56']
          Length = 632

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 289/606 (47%), Gaps = 83/606 (13%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
            + +P  +  AL+ RG+ +LT VQ+A+L P+L  +D+ VS+QTGSGKTVA GLALA  L 
Sbjct: 7   LDALPAPLAGALARRGFTSLTPVQQAVLAPELAGRDLRVSSQTGSGKTVAIGLALAPRLE 66

Query: 63  ---------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                     A +     A+AP A+ IAPTRELA Q+  EL WL +  G  VA   GG S
Sbjct: 67  RALADRAAAAAPDGAPRTAAAPAAVIIAPTRELAAQIAGELSWLLSPLGARVACVTGGTS 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              E R L+    ++ GTPGRL DH+    L+   + A+VLDEAD+MLDLGFRDD+E I+
Sbjct: 127 FGAEARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQMLDLGFRDDLEAIV 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P  R+  + SAT S  +  LA  +Q+DAV V        + DI + A LV  ++RD 
Sbjct: 187 GKMPGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRPGAANGDIAHVAHLVLPAERDA 246

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+VN+L     +  +VF  TR   +     L        ALSG+L Q+ER+  L   R G
Sbjct: 247 AVVNLLLLAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRSG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                +ATDVAARGID+P++  VIHA+   +PE   HRSGRTGRAGRKG SV ++    +
Sbjct: 307 AITTLVATDVAARGIDVPEVGRVIHADPPGDPEIFTHRSGRTGRAGRKGTSVLLVAPFAR 366

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-------------------- 393
             A RL R A V   + PAPS + +     +R+  +   +                    
Sbjct: 367 EHALRLLRRARVEATFRPAPSPDDVLRAADERLAAELAAVRLEGAAAGDAAAGDAAVVDA 426

Query: 394 ----------DSIQGDEKKMVDVLLAKHDPEKIAAGFL-RIHRAGLCAPEEITPVSLV-- 440
                      + +   +++   LLA  D  ++ A  L R    G CAP+ +T V+    
Sbjct: 427 NVRGPREASGPAPEARHRQLAARLLADMDATELVAALLARAKHTGPCAPQPVTAVAPPRS 486

Query: 441 --------------SGRDRFRDDSRAFKVGGGSRDNFKGSSW------------------ 468
                         SG             G  SR       W                  
Sbjct: 487 EPPPSRARPPAPPWSGAPSRARPPAPPWSGAPSRARSSAPPWSEAPSRARPAARQGNGEQ 546

Query: 469 --------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                   F ++ G +  A+ R L+ ++CR  G++ Q IGAIR+    + VEV++     
Sbjct: 547 PPRLPFVPFQVNWGERHGADPRRLLALVCRRGGVSSQQIGAIRIGSTASVVEVASPAAPE 606

Query: 521 LRRTVK 526
             R V 
Sbjct: 607 FARAVN 612


>gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 574

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 178/527 (33%), Positives = 280/527 (53%), Gaps = 33/527 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +G+ +   VQE +L  + R+ D++V A+TGSGKT+ F L L + L  E       +
Sbjct: 22  ALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNELPRE------TA 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L ++PTRELA Q+  E EW+    G+  A  +GG+ + R+ +DL+ G+ +VVGTPG
Sbjct: 76  TPRILVLSPTRELAQQIAGEAEWIGKYMGITTASLVGGMDMERQIKDLRRGSALVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DHIR + L    ++ +VLDE D MLD+GFRDDIE IL++ P   R  +FSAT+   +
Sbjct: 136 RTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWLFSATMPDEV 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +L K Y      + +  +  QH DI +RA LV    R   +VN+L +   +  ++FC T
Sbjct: 196 ASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWENPEMGLIFCHT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A      + L E  F   AL G++SQ ER++ +   R GR    +AT+VAARG+D+  +
Sbjct: 256 KAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVAARGLDVQGV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI   L  N E  +HRSGRTGRAG++G ++ V+    + R + + R +++ + W   P
Sbjct: 316 SHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASSMDLKWANVP 375

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
            V  I +  AQR L++   L   + D+  +   D LL    P  + A  L  +  GL   
Sbjct: 376 DVAEIAK--AQRGLRESALLGGDEPDQEIQAWADELLDMMAPRDLVARLLESYVNGLPNG 433

Query: 432 EEI---------------TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            ++                     SGRDR R   R      G+R +F+G +  S+ + SK
Sbjct: 434 YDLRKSLQNELENRRSGRDRGDRFSGRDRNRSPRR--NENRGNRSSFRGRA-QSIKL-SK 489

Query: 477 QKAEARW----LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            + +  W    ++  +C++  ++R  +G IR++ + T VE+     D
Sbjct: 490 GRIDQDWSVGRILATVCQALDVDRNEVGNIRMRDNHTEVELGPLAAD 536


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/510 (35%), Positives = 282/510 (55%), Gaps = 25/510 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E+G+   T VQ+ +L+  + EKD++V A+TGSGKT+AF L L   + A  +R S  
Sbjct: 17  KALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLLPLLQKITA-GERESKV 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTREL+ Q+ +E +W      V  A  +GG+ + ++ R L++G+ +V GTP
Sbjct: 76  -----LILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSLRDGSAVVTGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR   L+ S +K VVLDE D MLDLGF++++E ILDS P  +R+ +FSAT+   
Sbjct: 131 GRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQRVWLFSATMPAE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK Y K  V +++  E   H DI +   LV    ++  ++N+L +     AIVFC 
Sbjct: 191 IKNLAKRYLKTPVFISLTEEGEAHEDITHEVYLVPTRHKEEGLINVLLWEKPSRAIVFCH 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA     T+ L +  FQ + L GE+SQ+ER+ AL   R GR  + +AT+VAARG+D+  
Sbjct: 251 TRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVATNVAARGLDVEG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI   L  N E  +HRSGRTGRAG +G ++ V+        + + + + + + W+  
Sbjct: 311 VSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMVKTSTIPITWKNV 370

Query: 373 PSVEAIRERDAQRI-LQDPLF-LDSIQGDEK-KMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           P  + IR++  QRI  ++ +F  +  +  E  +  D LL  ++   + A  L +  +   
Sbjct: 371 PDPKDIRKK--QRISYEERVFAAEHYETPENLEWADSLLECNESRAMIARLLGLLFSRKN 428

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV------GSKQKAEARW 483
           A  E+T   L     R R   R       SR    GS+  SL        G  Q  +   
Sbjct: 429 AGYELT-ADLEQDLKRGRTPRR-------SRSKESGSAGSSLQTTIRIERGRDQGWDVGK 480

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++ ++C +  I++  +GAIR+Q D   VE+
Sbjct: 481 ILRVICSTLNIDKSGVGAIRLQNDHAQVEL 510


>gi|261314659|ref|ZP_05953856.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303685|gb|EEY07182.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 434

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 155/385 (40%), Positives = 229/385 (59%), Gaps = 35/385 (9%)

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
           ++ SE  QH+DIDY A+ V   +RD+AI+N L Y+ ++N+I+FCSTR +V      L+  
Sbjct: 16  SVQSETSQHADIDYVAMPVPPHERDHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNR 75

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F VVALSGELSQ ER+NALQ MRDGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ 
Sbjct: 76  GFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDT 135

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           LLHRSGRTGRAGRKG  V V+P + +R AERL   A +     PAPS+ A++ +  +RIL
Sbjct: 136 LLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERIL 195

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT--PVSLVSGR-- 443
              +F   ++ + ++++  L  ++ PE+IA+ FL    A   A EE++  PV  V G+  
Sbjct: 196 NAEVFNQPVEEEYQELLKALAERYTPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKP 255

Query: 444 --DRFRDDSRAFKVGGGS---------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
             DRF    R  +              R+      WFS+S G K +A+ +WL+P++C++ 
Sbjct: 256 RSDRFEKGDRYERGERRERGEPGERFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAG 315

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL---------------- 536
            ++++ +G+I++  + T  E++A   D  R++V  ++G   K L                
Sbjct: 316 DVSKRDVGSIKIFDNETRFEIAASKADEFRQSV-AERGTGEKSLVIRTAVAGAGGDAAAR 374

Query: 537 ---GGEKPDFRGYKSSGFKSKNSQD 558
              G  KP    +K  GF+  +  D
Sbjct: 375 ESRGSFKPRSDKFKEGGFRDGHKSD 399


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 182/524 (34%), Positives = 284/524 (54%), Gaps = 28/524 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTL 62
           F   P+++  AL  +G+ N   VQ  IL  D L + D++V A+TGSGKT+AF L L   +
Sbjct: 9   FSLRPELL-RALERKGFENPMPVQVRILEDDTLLDGDLIVQARTGSGKTLAFALPLLQRM 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R      P  L ++PTRELA Q  RE +W+  + G+  A  +GG+ + R+ R L+
Sbjct: 68  -ERGER-----TPQVLVLSPTRELAQQTAREFQWVGGEMGIRPASLVGGMDMDRQIRSLR 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GA +VVGTPGR+ DH+R   L    +++++LDE D MLDLGFRD++E I+ +     R 
Sbjct: 122 DGAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLDLGFRDELESIMSALGTVERT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   + TLA+ Y     ++++ ++  +H DI  RA ++    R   + N+L   
Sbjct: 182 WLFSATMPEDVVTLARKYLNAPRKISLVTDAARHEDIAQRAYVIPSRRRFEGLANVLLCE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++FC+TR       + L +  F+ +AL G+++Q+ER+NAL+  R GR  + +ATD
Sbjct: 242 HPKRALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGRVDLLVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L  VI   L    E  +HRSGRTGRAG +G +V ++     R+ + L   
Sbjct: 302 VAARGLDIDGLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTAREARQFKSLVSH 361

Query: 363 ANVSVVWEPAP---SVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIA 417
             + + W PAP    VE I   + ++ L     L+S + +E  ++    LL + D E++ 
Sbjct: 362 TALDIEWLPAPDASEVEGISRAEFEKTL-----LESPEDEEAYREWAQQLLQREDTEELL 416

Query: 418 AGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS----RDNFKGSSWFS 470
           AG L      +A   A  E     +   ++R R D R    G GS    R    G+    
Sbjct: 417 AGLLARAFGSQARGYAIREDVEAEMAREQNR-RYDPR--PTGRGSDRPLRKLLDGAVTMK 473

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            + G +   E   L+  LCR  G+ R+ +G IR++    FVE+S
Sbjct: 474 FAQGRQDGWEVGALLGALCRGLGVRREDVGNIRLRDHCAFVELS 517


>gi|282855404|ref|ZP_06264727.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
 gi|282586784|gb|EFB92029.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
          Length = 467

 Score =  273 bits (698), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 10/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+    AL +RG+   T VQ  +L+    + D++V A+TGSGKT+AF L L S L   
Sbjct: 22  NLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLLPLLSELEGG 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +      P  L ++PTRELA+Q   E E+L    GV  A  +GG+S+  +   L++GA
Sbjct: 82  SKK------PRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLRHGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S ++ +VLDE D MLD+GFRD++E IL+++  +++  +F
Sbjct: 136 SVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKTWLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  ++ +L + Y K+ +R+ +  E  QH DI +RA LV    R  A+VNIL +    
Sbjct: 196 SATMPDSVFSLCRRYLKEPMRLELNHEEEQHEDIVHRAYLVPSRQRMEALVNILLWEKPA 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+         L E     +AL+G+++Q+ERSNAL+  R GR  + +AT+VAA
Sbjct: 256 LCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVATNVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI   L  N E  +HRSGRTGRAG +G ++ ++      R + + R + +
Sbjct: 316 RGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFMLRSSEM 375

Query: 366 SVVWEPAPSVEAI----RERDAQRILQ 388
            V W   P ++ I    RER  + +L+
Sbjct: 376 KVEWLKVPDIQEISVIQRERREESLLE 402


>gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 558

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 171/503 (33%), Positives = 269/503 (53%), Gaps = 9/503 (1%)

Query: 14  ALSERGYVNLTSVQEAIL-NPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           AL  +G+ +   VQ ++L +P L + D++V A+TGSGKT+AF L L + +      F   
Sbjct: 19  ALRRKGFEHPMPVQVSMLEDPTLVDGDLIVQAKTGSGKTLAFALPLLNRM-----EFGER 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S P  L ++PTRELA+Q  RE +WL     + VA  +GG+ + R+ + L+ GA +VVGTP
Sbjct: 74  S-PKVLVLSPTRELALQTAREFQWLGYDLRIRVASLVGGMDMERQVKALREGAAVVVGTP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR        ++++VLDE D MLDLGF+D++E I+ +  +  R  +FSAT+   
Sbjct: 133 GRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQVERSWLFSATMPEE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + TLAK Y     ++++  +  +H DI  RA ++    R   + N+L +   +  IVFC+
Sbjct: 193 VVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLANVLLFERPRRGIVFCA 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L +  F+  AL G+++Q+ER+ AL+ +R GR+++ +ATDVAARG+D+  
Sbjct: 253 TKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQILVATDVAARGLDISG 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI   L    E  +HRSGRTGRAG++G ++ ++          + R  ++ V W PA
Sbjct: 313 VSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRGMIRGTSLEVEWLPA 372

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           P  E +       I +  L   +   D     + +L + D + I AG L     G+    
Sbjct: 373 PDAEELESLTRAEIERWCLENPAEGEDYMDWAEEILQREDAQLIVAGLLSRSFEGIPKGY 432

Query: 433 EITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491
            I   V     R R  D  +A +     R    GS     S G +   E   L+  LCR 
Sbjct: 433 SIQEDVQAEMARSRRADRPKA-RDQRPLRKLVSGSVTMRFSSGREDGWEVGPLLGALCRG 491

Query: 492 SGINRQSIGAIRVQPDLTFVEVS 514
            GI R+ +G I+++    FVE+S
Sbjct: 492 LGIRREDVGNIKLKDRCAFVELS 514


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 178/519 (34%), Positives = 277/519 (53%), Gaps = 31/519 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GYV  + +Q   +   L  KD++  AQTG+GKT AF L +   +  +N      
Sbjct: 17  KAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILEKIDPKNKNVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               AL + PTRELAVQV  E +        V  + I GG S   + R L+ G  IVVGT
Sbjct: 75  ----ALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIRALKKGVQIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L + +LK +VLDEADEML++GF+DDIE IL+ +P+ R+ +MFSAT++ 
Sbjct: 131 PGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPESRQTVMFSATMAR 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +AK YQK+   V + SE   +  ID   V V   DR  A++  +   G  ++IVF 
Sbjct: 191 EIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIRCIDMMGLTSSIVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L E  +    L G+L Q +R   +   R     + +ATD+AARGID+ 
Sbjct: 251 NTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILVATDIAARGIDVS 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           ++E V + ++  N EN +HR GRTGRAG  G+S+ FV  ++M  R  R+       +   
Sbjct: 311 NVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDM-FRIRRIEDYTKTKMSKM 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAK-HDPEKIAAGFLRIHR 425
           P PSVE I+ + +  ++ +   + +++G     E +++  +L K    E++AAG L++ +
Sbjct: 370 PIPSVEEIQAKKSTNVIDE--IVANLEGKDFSKENELIAAILEKGFTIEQVAAGLLQM-K 426

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
            G    +      + +G  + +          G R N        ++VGSKQK +A+  +
Sbjct: 427 IGQSTKKYAHIEEVTAGNPKAK----------GMRKN---EVRLFVNVGSKQKVKAKDFV 473

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLRR 523
            ML + S I  ++IG I V    TF+ V  A   +++R+
Sbjct: 474 GMLTKKSDIPARAIGDIDVYKKFTFINVDKAHANNIIRK 512


>gi|149918583|ref|ZP_01907072.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
 gi|149820659|gb|EDM80071.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
          Length = 672

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/383 (41%), Positives = 222/383 (57%), Gaps = 8/383 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P  + +A+ ERG+  LTSVQ+A+L+P+LR  ++ +S+ TGSGKT+A GLALA +LL
Sbjct: 19  FEGVPAPLAKAMRERGFTGLTSVQQAVLSPELRGHNLRISSATGSGKTMALGLALAESLL 78

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQ 122
            +  R      P AL I PTRELA QV  EL  LY+   GV V V  GGV +  + R L 
Sbjct: 79  GDEARSR--RGPTALVITPTRELASQVRGELASLYSMVRGVEVEVVTGGVDIRGDWRRLA 136

Query: 123 NGAHIVVGTPGRLCDHIRG----KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               ++V TPGRL DH+R     +G++ S +  VVLDEAD+MLD+GFRD+++ I+   P+
Sbjct: 137 RRPRVLVATPGRLLDHMRNDSGERGVDCSDVSHVVLDEADQMLDMGFRDELDAIVAELPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R   + SAT    +  LA  +Q D  R V   +    H DI+     V + +R  A+VN
Sbjct: 197 SRTSHLVSATFPREVRRLADAFQGDEARTVQGTALGAPHQDIEVTCYSVDMGNRYPALVN 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  ++F   R         LA   F  +  SGELSQ +R+  L+  R G    
Sbjct: 257 LMLLASGRRTLIFVRRRIDTDTLASQLASDGFSALPFSGELSQAQRTRTLEAFRSGIVNT 316

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VIHA+L ++  N  HRSGRTGRAGRKG S  ++P+  + R  
Sbjct: 317 LVATDVAARGIDVADIATVIHADLPTDHANYTHRSGRTGRAGRKGASWLLVPRRAEGRIR 376

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
           RL   A V   W   P+ + IR+
Sbjct: 377 RLLSSAKVEPNWATPPTPKKIRK 399


>gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
 gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
          Length = 590

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 308/608 (50%), Gaps = 76/608 (12%)

Query: 3   IFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F + P V  + + L+ RG+   T VQ  +L  D  ++D++V A+TGSGKT+AF L + S
Sbjct: 6   LFSDFPLVAPLIKELASRGFDEPTPVQRGVLGQDDWDRDLVVQARTGSGKTLAFLLPVLS 65

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L +   R  P    + AL ++PTRELA Q+ +E        G+  AV +GG+ + R+  
Sbjct: 66  ELAS---RLFPGRQTVKALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQIS 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  + VGTPGR+ DH++   L++S ++ VVLDE D MLD+GFRD++E IL ++  +
Sbjct: 123 SLRSGVALAVGTPGRVLDHVKRGTLDLSEIETVVLDEGDTMLDMGFRDELEAILQAASAR 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R  +FSATI   +T + + +  + V ++   E+ QHSDI ++A LV  S R   +VN+L
Sbjct: 183 KRTWLFSATIPQEVTAVCRRFTTNPVFLSFDDESSQHSDIVHKAYLVPSSQRYEGLVNVL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      ++FC TR+  +  T+ L +  F  + L G++SQ+ER+ AL   R GR  V +
Sbjct: 243 LWERPSLCLIFCRTRSDTAEVTERLQKEGFLAMPLHGDMSQRERNTALSSFRSGRIPVLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT+VAARG+D+  +  VI   +  + E  +HRSGRTGRAG +G ++ V+      R + +
Sbjct: 303 ATNVAARGLDVSGVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSRFKFM 362

Query: 360 FREANVSVVWEPAPSVE-------AIRERD-------------AQRIL----QDPL---- 391
            R   + V W   P  +       ++R+               AQ +L    +DP     
Sbjct: 363 MRSTQMKVQWLKVPDFQEISVVQRSVRQEKLLAVAPSEEFFSWAQELLETAGEDPTALVA 422

Query: 392 -FLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIH--RAGLCAPEEITPVSLVSGRDR 445
             L S+  DE K   + D LL + +          +   RAG   P E         +DR
Sbjct: 423 KLLASVTQDEPKGYRLRDSLLQELERRSARREAREMPSGRAGFRRPSE------EQKKDR 476

Query: 446 FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
           +     + ++  G RD+     W   SVG         ++  LC + G++R  IG I+++
Sbjct: 477 YPGSGVSIRIAKGRRDD----DW---SVGR--------ILGALCGALGVDRTEIGNIKMR 521

Query: 506 PDLTFVEVSADGVDLLRRTVKL---DKGIQLKYLGGEK--------PDFRGYKSSGFKSK 554
              T V++    +  L    +L   DKG+ L   GG+         P  R +  SG   +
Sbjct: 522 ETYTEVQLGPKALSQLNSGGRLRLADKGL-LSGEGGQNFVPRLGSAPRRRRFDPSG---R 577

Query: 555 NSQDGATK 562
              DG TK
Sbjct: 578 KIDDGFTK 585


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 270/508 (53%), Gaps = 25/508 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ + G+   + +Q   +   ++ KD++  AQTG+GKT  FG+ +A TL   + R  
Sbjct: 29  VAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPRDGRVQ 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV +E+  +  +  +      GG S+ R+ R L+ G  +V+G
Sbjct: 89  ------ALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRYGVQVVIG 142

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  K L +++++ VVLDEADEMLD+GF +DIE IL  +P++R+ L+FSAT+ 
Sbjct: 143 TPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLFSATMP 202

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ Y K+   V I+ +      I+        S + +A+  IL      ++I+F
Sbjct: 203 GPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIGSSIIF 262

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V      L    +    L G+L+Q +R   ++  RDG+A + IATDVAARG+D+
Sbjct: 263 CRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDV 322

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ +I     R+ + + R     +   
Sbjct: 323 ENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKARIQRR 382

Query: 371 PAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
             PS+  I  R+++A ++    L      G+ K ++  L  ++DP +IAA  L++   G 
Sbjct: 383 DLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISELAEEYDPMEIAAATLKLLIEGP 442

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            A  E             +D++  F    G+     G     +++G  Q    + ++  +
Sbjct: 443 EAETE-------------KDEAPEF----GNTGAEPGMVRLFMNIGRAQGIRPQDIVRAI 485

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              +GI    IG I +    TFVEV  D
Sbjct: 486 AEEAGIPGNVIGVINIYDKFTFVEVPED 513


>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C7]
          Length = 546

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 288/548 (52%), Gaps = 34/548 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M+ F+N+     I +AL ++G+ N T +QE  + P L E  +DV+  AQTG+GKT AFG+
Sbjct: 1   MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAI-PILIEGKRDVVGQAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +  T+  E+ R + A     L +APTRELA+QV  E++ +     + V    GG S+ R
Sbjct: 60  PILETI-DESSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S 
Sbjct: 114 QIRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   + 
Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        ++FC T+A V   +  L E  +    L G+++Q +R   L   +  +  
Sbjct: 234 RIIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKIN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ 
Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + + AN  +  E  P V+ I     ++I+     L       D +KM   LL   DP+
Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQ 413

Query: 415 KIAAGFLR-----------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           ++ +  L+             R G  A  E        GRDR    S   +  G  R +F
Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANRE--------GRDRGEGRSEGRRDRGEGRRSF 465

Query: 464 --KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
              G+    +++G   K   + L+  + + S +  + I  ++V    +FV VS+D  +++
Sbjct: 466 VSGGNVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEII 525

Query: 522 RRTVKLDK 529
             + K +K
Sbjct: 526 LDSFKHEK 533


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 261/511 (51%), Gaps = 31/511 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L  +D++  AQTG+GKT AF L +   L     R    
Sbjct: 15  KAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIERLQPNGRR---- 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELAVQV +    L       V    GG  + R+ R L++   +VVGTP
Sbjct: 71  --PQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALRHPVEVVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR + L++S++  VV+DEADEMLD+GF +D+E+ILD  P +R+  +FSATI   
Sbjct: 129 GRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQTALFSATIPDR 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA+ Y +D  RV +  E      I+   V V    +  A+  IL      +AI+FC 
Sbjct: 189 VAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRILDMETPPSAIIFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    +   AL G+LSQ +R   +   R G+A + IATDVAARG+D+  
Sbjct: 249 TKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLIATDVAARGLDVEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  +PE+ +HR GRTGRAGR G ++ ++    +R    + R   V +     
Sbjct: 309 ITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREIERATGVRMTRRGV 368

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGFLRIHRAGL 428
           P+ E +  R  QR L      + I+ ++ +    +VD L A +DP +IAA  +R+     
Sbjct: 369 PTPEEVAAR--QRELLGESLAEVIEANDLEAAMMVVDELAAYYDPSEIAAAAIRMLM--- 423

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
                         RDR   +      GGGS +   G +   L++G K       ++  +
Sbjct: 424 --------------RDRGVAEQEEIPTGGGSTE--AGMARLFLNLGRKDGIRPMDVVGAI 467

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
              + I  +SIG I +    TFV+V    VD
Sbjct: 468 ANEARIPGKSIGQIEIMDRYTFVDVPEQVVD 498


>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 528

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 267/505 (52%), Gaps = 29/505 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +ALS++G+   T +QE ++   L+ E+D++  AQTG+GKT AFGL L   L    D  SP
Sbjct: 18  KALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLIELL----DDKSP 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L  K  + +    GG S+  + R L+N AHIVVGT
Sbjct: 74  FVQ--AIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLENNAHIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI  K L ++ LK +VLDEADEML++GF +DIE I+  + + +RML+FSAT+  
Sbjct: 132 PGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRMLLFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +AK Y KD   + + ++       +     V   D+  A+  I         ++FC
Sbjct: 192 EILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRDMEKEFYGLIFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L +  +   AL G++SQ +R   L+  +  +  + +ATDVAARGID+ 
Sbjct: 252 RTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLVATDVAARGIDIS 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL  VI+  L  +PE+ +HR GRTGRAG++G ++ FV P+   R+   + + A   +  +
Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEY-RKLLYIMKIAKADIKKK 370

Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
             PSV  + +   +RI  +   +  D++  D  ++ + LL ++DP KI A  L+++    
Sbjct: 371 KVPSVSEVIQAKKERIKDEVSDILSDNMSNDYFELANKLLEEYDPVKIVAALLKMNYKDD 430

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
                 + +S VS  DR                  KG +   +++G  +    + ++  +
Sbjct: 431 FEAGSYSEISEVSNVDR------------------KGKARLFIAMGKLENMTPKKIVDFI 472

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
              +GI    I  ++V    +F+ V
Sbjct: 473 VDKTGIKESDIKEVKVFDKFSFISV 497


>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 266/517 (51%), Gaps = 34/517 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I + I  A+ + G+   + +QE  +   L   DV+  AQTG+GKT AFG+ +       
Sbjct: 8   QISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPVI------ 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+ +      AL + PTRELA+QV  EL+ L A   +      GG S+  + + L+ G 
Sbjct: 62  -DKVTEERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQIKALKQGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DHIR K L ++ +  +VLDEADEMLD+GF DDIE IL      R+ L+F
Sbjct: 121 QVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKGARQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  L++ Y      V I         ID     V   ++ +++  I+      
Sbjct: 181 SATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLERNKIDSLCRIIDSEEVD 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      IATDVAA
Sbjct: 241 LGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFLIATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ ++     +    + +E  +
Sbjct: 301 RGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKM 360

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDE----KKMVDVLLAKHDPEKIAAG 419
           ++  +  P++E + E+  Q+     L  D+I   G E    K +V  +LA H PE + A 
Sbjct: 361 AIPSQDVPTIEDVVEK--QQSSWKKLVHDTIDTGGKEFELFKPLVQEVLADHSPEDVVAA 418

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L+++ +   A EE       +G +        F   GG+    KG   F ++VG     
Sbjct: 419 LLKMNFSNDSAAEE-------AGYN--------FGETGGA----KGMVRFFINVGRNVNM 459

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             + L+  +    GI  ++IG I +  + TFVEV  D
Sbjct: 460 SPKILIEEISELVGIPGKAIGRIDIFENFTFVEVPED 496


>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C6]
          Length = 546

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 175/548 (31%), Positives = 288/548 (52%), Gaps = 34/548 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M+ F+N+     I +AL ++G+ N T +QE  + P L E  +DV+  AQTG+GKT AFG+
Sbjct: 1   MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAI-PILIEGKRDVVGQAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +  T+  E  R + A     L +APTRELA+QV  E++ +     + +    GG S+ R
Sbjct: 60  PILETI-DEGSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDR 113

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S 
Sbjct: 114 QIRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   + 
Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        ++FC T+A V   +  L E  +    L G+++Q +R   L+  +  +  
Sbjct: 234 RIIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKIN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ 
Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + + AN  +  E  P V+ I     ++I+     +       D +KM   LL   DP+
Sbjct: 354 KYIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCEKMAAELLEDADPQ 413

Query: 415 KIAAGFLR-----------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           ++ +  L+             R G  A  E        GRDR    S   +  G  R +F
Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANRE--------GRDRGEGRSEGRRDRGEGRRSF 465

Query: 464 --KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
              G+    +++G   K   + L+  + + S +  + I  ++V    +FV VS+D  +++
Sbjct: 466 VSGGNVRLFVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEII 525

Query: 522 RRTVKLDK 529
             + K +K
Sbjct: 526 LDSFKHEK 533


>gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 624

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 181/540 (33%), Positives = 283/540 (52%), Gaps = 40/540 (7%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55
           MK FE +   P+++ +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFG
Sbjct: 1   MKTFEELGVSPEIL-KAIKEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113
           L L   +  ++       AP AL + PTREL +Q+  +L   Y+K   G+ +    GG S
Sbjct: 59  LPLIQKVDVKH------RAPQALILCPTRELCLQIAGDLND-YSKYIDGLKILPVYGGSS 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + R L+ G HI+V TPGRL D I  K   +  +  VV+DEADEML++GF D I  IL
Sbjct: 112 IESQIRMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAIL 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P+ R  LMFSAT+SP I+ +AK Y  DA  + I ++N    ++++ A LV   D+  
Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYA 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+  I  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R  
Sbjct: 232 ALKRIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    +
Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------ 407
            +   + R  N   +    PS + I E+   +++ D   ++ ++ +++++   L      
Sbjct: 352 GKMREIERIINKKFIMGEMPSGKQICEQQLIKLIDD---IEKVKVNDEEIESFLPGIYRK 408

Query: 408 ---LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRD 461
              L+K D  K  ++  F R       APE    + + S  DR  +  S+  K  G +R+
Sbjct: 409 LEWLSKEDLIKRVVSMEFNRFLEYYSNAPE----IEIPSTNDRRSERGSKERKDHGSARE 464

Query: 462 NF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                  KG +   L+VG      A  ++ ++ R+    R +IG I +  + +F EV+ +
Sbjct: 465 KTERKAEKGYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAEN 524


>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C5]
          Length = 541

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 171/543 (31%), Positives = 281/543 (51%), Gaps = 29/543 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M+ F+N+     I EAL ++G+   T +QE  + P L E  +D++  AQTG+GKT AFG+
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTTPTPIQEQAI-PILIEGKRDIVGQAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +  T+  E+ R + A     L +APTRELA+QV  E++ +     + V    GG S+ R
Sbjct: 60  PILETI-DESSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S 
Sbjct: 114 QIRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   + 
Sbjct: 174 STEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        ++FC T+A V   +  L E  +    L G+++Q +R   L   +  +  
Sbjct: 234 RIIDLEKEFYGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKIN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ 
Sbjct: 294 VLVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKF 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + + A   +  E  P V+ I     ++I+     +       D + M   LL   DP+
Sbjct: 354 KYIQKIAKTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCENMAADLLEDADPQ 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS--------RAFKVGGGSRDNFKGS 466
           ++ +  L+       +      +   S R   RD S        R+F  GG  R      
Sbjct: 414 EVLSAVLKYALKDELSESNYKKIGRNSQRSEGRDRSGRSEGRGRRSFVAGGNVR------ 467

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +++G   K   + L+  + R S +  + I  ++V    +FV VS+D  + +  + K
Sbjct: 468 --LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSDDAERILDSFK 525

Query: 527 LDK 529
            +K
Sbjct: 526 HEK 528


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N+
Sbjct: 107 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + SP   PLA+ +APTRELA QV RE    ++ +  V  +C+ GG  + ++ R L  G  
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 221

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ V +++  E+ Q     I   ++      +   +  +++ H  
Sbjct: 282 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +    FQ  AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ V+    Q RA R+  E 
Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 458

Query: 364 NVSVVWEPAPSV 375
           +V   +   P +
Sbjct: 459 DVGCKFTELPKI 470


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N+
Sbjct: 107 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 165

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + SP   PLA+ +APTRELA QV RE    ++ +  V  +C+ GG  + ++ R L  G  
Sbjct: 166 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 221

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ V +++  E+ Q     I   ++      +   +  +++ H  
Sbjct: 282 ATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +    FQ  AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ V+    Q RA R+  E 
Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 458

Query: 364 NVSVVWEPAPSV 375
           +V   +   P +
Sbjct: 459 DVGCKFTELPKI 470


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 224/372 (60%), Gaps = 12/372 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N+
Sbjct: 155 PKIVSQ-LASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNE 213

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + SP   PLA+ +APTRELA QV RE    ++ +  V  +C+ GG  + ++ R L  G  
Sbjct: 214 KNSPGKFPLAIVLAPTRELAKQVERE----FSDSSNVETICVYGGTPISQQIRQLNYGVD 269

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 270 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 329

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ V +++  E+ Q     I   ++      +   +  +++ H  
Sbjct: 330 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 389

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +    FQ  AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 390 GGKCIVFTQTKRDADRLSYTMGRS-FQCQALHGDITQAQRERTLKGFREGHFNILIATDV 448

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ V+    Q RA R+  E 
Sbjct: 449 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAI-VMHSYQQSRAIRMV-EN 506

Query: 364 NVSVVWEPAPSV 375
           +V   +   P +
Sbjct: 507 DVGCKFTELPKI 518


>gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 624

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 181/540 (33%), Positives = 281/540 (52%), Gaps = 40/540 (7%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55
           MK FE +   P+++ +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFG
Sbjct: 1   MKTFEELGVSPEIL-KAIKEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113
           L L   +  +         P AL + PTREL +Q+  +L   Y+K   G+ V    GG S
Sbjct: 59  LPLIQKIEVKK------RVPQALILCPTRELCLQIAGDLND-YSKYIDGLKVLPVYGGSS 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + R L+ G HI+V TPGRL D +  K   +  +  VV+DEADEML++GF D I  IL
Sbjct: 112 IESQIRMLKAGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAIL 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P+ R  LMFSAT+SP I+ +AK Y  DA  + I ++N    ++++ A LV   D+  
Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYA 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+  I  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R  
Sbjct: 232 ALKRIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    +
Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREK 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------ 407
            +   + R  N   +    PS + I E+   +++ D   ++ ++ +++++   L      
Sbjct: 352 GKMREIERIINKKFIMGEMPSGKQICEQQLIKLIDD---IEKVKVNDEEIESFLPGIYRK 408

Query: 408 ---LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRD 461
              L+K D  K  ++  F R       APE  TP    S  DR  + + +  K  G +R+
Sbjct: 409 LEWLSKEDLIKRVVSMEFNRFLEYYSNAPEIETP----SMNDRRSEREPKGRKDHGSARE 464

Query: 462 NF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                  KG +   L+VG      A  ++ ++ R+    R +IG I +  + +F EV+ +
Sbjct: 465 KTERKAEKGYTRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAEN 524


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 270/521 (51%), Gaps = 29/521 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M IF + P  + I +A+ + G+   + +Q A +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MTIFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   ++ +PA+   A+ + PTRELA+QV  EL  +     V      GG S+  + 
Sbjct: 61  V-------EKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGR+ DH+R K L + H+  +VLDEADEMLD+GF +DIE I++  P 
Sbjct: 114 RALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  LA  Y K    + ++ E      I+     V   ++  ++  I
Sbjct: 174 ERQTLLFSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+FC T+  V   ++VL    +    L G+LSQ +R   +   R+G     
Sbjct: 234 LDSEDVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRAGRKG+++ ++     R+   
Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + ++    V+    PS+E + ER  +++   L   L  D+I    +K+ D L+ ++  EK
Sbjct: 354 IQKQTKAQVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVADALVGQYPAEK 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +AA  L +         +               ++ A+  G       KG   F L+VG 
Sbjct: 414 VAAAALHLAFHTEAGQGQ---------------EAEAYNFG--ETGAAKGMVRFFLNVGR 456

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               + + L+  +  S GI  +S+G I +    TFVEV  +
Sbjct: 457 NANMKPQDLVREISESVGIPGKSVGRIDIFESFTFVEVPEE 497


>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 537

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 165/517 (31%), Positives = 266/517 (51%), Gaps = 34/517 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   + +A+ + G+   + +QE  +   L   DV+  AQTG+GKT AFG+ +       
Sbjct: 8   DISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPVV------ 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+ +      AL + PTRELA+QV  EL+ L A   +      GG S+  + + L+ G 
Sbjct: 62  -DKVTEERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQIKALRQGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+R   L ++ +  VVLDEADEMLD+GF DDIE IL    + R+ L+F
Sbjct: 121 QVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQVRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  L++ Y  D   V I         I+     V   ++ +++  I+     +
Sbjct: 181 SATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLERNKIDSLCRIIDSDDVE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V+  T+ L    + V  L G+L+Q +R   ++  RD      IATDVAA
Sbjct: 241 LGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ ++  +PE+ +HR GRTGRAGR G ++ ++     +    + +E  +
Sbjct: 301 RGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKM 360

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAKHDPEKIAAG 419
            +     P++E + E+  Q+     L  D+I+   K+M      VD +LA+ DP+++ A 
Sbjct: 361 HIPSASVPTIEEVVEK--QQSSWKNLIQDTIEQGGKEMELFLPLVDEILAEQDPKQVVAA 418

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L++  +   A E               D   +F   GG+    KG   F ++VG     
Sbjct: 419 LLKLKFSTETATE---------------DAGYSFGDTGGA----KGMVRFFINVGRNVNL 459

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             + L   + R  GI  +SIG I +  + +FV+V  +
Sbjct: 460 TPKILGEEIGRLVGIPVKSIGRIDIFENFSFVDVPEE 496


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score =  253 bits (646), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 166/523 (31%), Positives = 267/523 (51%), Gaps = 46/523 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I + I +A+ E G+   + +Q   +   L   DV+  AQTG+GKT AFG+ +       
Sbjct: 12  QIGEEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVV------ 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++ S      AL + PTRELA+QV  E++ L     +      GG S+  + + L+ G 
Sbjct: 66  -EKVSTGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+R K L + H+  V+LDEADEMLD+GF DDIE IL     +R+ L+F
Sbjct: 125 QVVIGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  L++ Y  D   V+I         ID     V   ++ +++  I+      
Sbjct: 185 SATMPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLERNKLDSLCRIIDSEQID 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      IATDVAA
Sbjct: 245 LGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ ++     +    + +E  +
Sbjct: 305 RGIDVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKM 364

Query: 366 SVVWEPAPSVEAIRERD--------AQRIL----QDPLFLDSIQGDEKKMVDVLLAKHDP 413
           S+  +  P++E + E+         A RI     Q  LF        ++M + L+A++D 
Sbjct: 365 SIPSQEVPTIEDVVEKQKESWKKQIAHRIEKGSNQKHLF--------EQMTEELMAEYDS 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +++ +  L+++ A   APE               D   +F   GG+    KG   F ++V
Sbjct: 417 KEVISALLQLNYAMDTAPE---------------DAGYSFGETGGA----KGMVRFFINV 457

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           G       + L+  +    GI  ++IG I +    TFVEV  +
Sbjct: 458 GRNVNMSPKILVEEIAELVGIPGKAIGRIDIFEKFTFVEVPEE 500


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score =  253 bits (646), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 209/344 (60%), Gaps = 9/344 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G   L  +Q+A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N+   P   
Sbjct: 120 LAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIRHNEINKPGRL 179

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           PLA+ +APTRELA QV +E    +  +  +  +C+ GG  + ++ R L  G  +VVGTPG
Sbjct: 180 PLAICLAPTRELAKQVDKE----FVDSSPLQTLCVYGGTPIQQQMRALDYGVDVVVGTPG 235

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P KR+ LMFSAT+ P I
Sbjct: 236 RVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFSATMPPWI 295

Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVF 250
             L + Y KD V V++  E+ Q     I   ++      +   +  +++ H      IVF
Sbjct: 296 RKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAKGGKCIVF 355

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R +  +   + Q  AL G+++Q +R   LQ  R+GR    IATDVAARG+D+
Sbjct: 356 TQTKRDADRLSYTMGRTV-QCQALHGDITQGQRERTLQGFREGRFSTLIATDVAARGLDI 414

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           P+++LVIH EL +N E  +HRSGRTGRAG+KG+++ +   N  R
Sbjct: 415 PNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSR 458


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 261/520 (50%), Gaps = 28/520 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N+     I + L + G+   T +Q+  +   L   D++  AQTG+GKT AFG+ L 
Sbjct: 8   KFFGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLV 67

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L   N R        A+ I PTRELA+QVG E+  +       V    GG S+ R+ R
Sbjct: 68  ARL---NFR---KRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGRL DH+R + L +  +  VVLDEADEMLD+GF DDIE IL  +P +
Sbjct: 122 SLRQGVHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPE 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I+ LA+ Y  D   V ++  N     I+          +  A+  IL
Sbjct: 182 RQTLLFSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYEAPEKHKLEALCRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC T+  V      L    +  V+L G+LSQQ+R+  ++  R G   + +
Sbjct: 242 DTTEITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR G+++ +I     R+   +
Sbjct: 302 ATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEKI 416
                  +     PS+  + ER  + I +D L     +G     + +VD L  ++DP  I
Sbjct: 362 ENLTKTRIKRGRLPSIADVAERQREGI-KDRLVQIIEEGKLAYYRSVVDPLTDEYDPIDI 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L+I         ++ P    +G D   D      V  G      G     L++G K
Sbjct: 421 AAAALKISL-------DLEP----AGEDIDLD-----TVNFGDTGARPGMVRLFLTLGRK 464

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +     ++ +    SGI    IG+I +  + +FVEV  D
Sbjct: 465 DQTSPAEIVKLFSEESGIPGSKIGSINIYENFSFVEVPED 504


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 172/532 (32%), Positives = 273/532 (51%), Gaps = 31/532 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ GY   + +Q   +   L   DV+  AQTG+GKT AF + L   +   +
Sbjct: 11  VKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPLLEKIDPSD 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
            R        A+ + PTRELA+QV  E+  L AK   GV      GG  + R+ + L+ G
Sbjct: 71  KRLQ------AIVLCPTRELAIQVSEEVRKL-AKYLHGVKTLPIYGGQPIDRQIKALKGG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGR+ DHI  K L  S +K VV+DEADEMLD+GFR+DIE IL S+P++R+  +
Sbjct: 124 VQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTPQERQTSL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  L + YQK+ V + +  +    ++I    +    S++   +  ++  +  
Sbjct: 184 FSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTRLIDVYNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF +T+         L    +   +L G+L Q +R   +   R G   + +ATDVA
Sbjct: 244 KLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+ D+E VI+ EL  + E  +HR GRTGRAGR G++  FV  + M R+ + + R  
Sbjct: 304 ARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREM-RKLKDIERYT 362

Query: 364 NVSVVWEPAPSVEAIRER-------DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-- 414
              V+    P+V  + ++       D +  L++  F   +Q      V+  L + D    
Sbjct: 363 KSKVMKHSIPTVNDVEQKKIGQFFSDIKETLEEGNFSKQLQ-----WVEDFLNEEDYSLI 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            I A  L+ +  G    EEI   S    R R ++  R     GG R N +  +   L+VG
Sbjct: 418 DICAAMLK-NSLGADEKEEIKEESYYDSR-RNKNGGR----NGGPRRNDENMTRLFLNVG 471

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             QK +A+ ++  +   +GIN + IG I +    TFV+V  +   ++   +K
Sbjct: 472 RNQKIQAKDILGAIAGETGINSKYIGTIDIYDKYTFVDVDQNKAKMVIEKMK 523


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score =  251 bits (641), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 161/452 (35%), Positives = 241/452 (53%), Gaps = 23/452 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAF 54
           MK FE   + + I EAL ++G+   T +Q+     ILN D   KD++  AQTG+GKT AF
Sbjct: 4   MKEFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSD---KDIVAQAQTGTGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           G+ L   +    DR    S    L + PTRELA QV  E+  L  +  + +    GG S+
Sbjct: 61  GIPLIEMI----DR--KKSGVKCLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSM 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ GA IVVGTPGR+ DH++ K L+IS +   +LDEADEML++GF DDI+ I  
Sbjct: 115 ELQLKRLKEGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFR 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P+ RR+L+FSAT+   I  LAK + KD   + + ++    S  +     V   D+  A
Sbjct: 175 YTPENRRVLLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDKFEA 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I   +     ++FC T+  V      L +  +    L G+LSQ +R   L   +  R
Sbjct: 235 LCRIRDMYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKR 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+ +L  VI+  L  NPE+ +HR GRTGRAG+KG+++  +  +  R
Sbjct: 295 INMLVATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYR 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDV---LLA 409
               + R +N  +  E  P VE I E   + I+ D   L ++    + K  +D    LL+
Sbjct: 355 NLLYIMRISNTEIKKEKLPDVEEIIENKKKHIIDD---LKAVVENKEHKDYLDFAKELLS 411

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             +PE I A  LR   A   + E  + +  V+
Sbjct: 412 VGNPEDIVAAMLRYRFADDLSSESYSDIEEVT 443


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/512 (31%), Positives = 267/512 (52%), Gaps = 39/512 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + G+   + +Q   +   L+ KDV+  AQTG+GKT AFG+ +        +R  P 
Sbjct: 19  KALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIV-------ERLVPG 71

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA+QV  E+  +     V      GG S+ R+ R L+ G  +V+GT
Sbjct: 72  QRAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRFGVDVVIGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S ++ VVLDEADEMLD+GF +DIE IL ++P +R+ L+FSAT+ P
Sbjct: 132 PGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFSATMPP 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  Y +D + +++  +      ID     V  S +  A+  IL     +  I FC
Sbjct: 192 EIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSFKTEALTRILDIENVERGICFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +Q   + G+++Q +R+  +   ++G   + +ATDVAARG+D+ 
Sbjct: 252 RTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVAARGLDIS 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368
           D+  V + ++  +PE+ +HR GRTGRAGR G ++  V P+     R  ER+ +     + 
Sbjct: 312 DVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIERVIK---ARLQ 368

Query: 369 WEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             P P++    E  RE+  +R+++  +  +   G+ +++ + LLA++DP  + A  L+  
Sbjct: 369 RRPVPTLSDVAEKQREQLKERLIK--ILEEDKLGEFRELAEDLLAEYDPSDLVAAALK-- 424

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                         LVSG  +    ++  ++  G      G     L+VG  Q  +   +
Sbjct: 425 --------------LVSGEGK---PAQQAQMEFGDTGAEAGMVRLFLNVGRAQAIQPADI 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +  + + + I   SIG I +    TFVEV  +
Sbjct: 468 VRTIAQEANIPGSSIGIINIYDRFTFVEVPKE 499


>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 492

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 214/369 (57%), Gaps = 4/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY  +T +QE  +   L+ KDV+ +AQTG+GKT AF L L   +L  
Sbjct: 9   SLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLLQRMLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELAVQV  +++ LYAK T +  AV  GG+ +  +  +L+
Sbjct: 69  ENASTSPARHPVRALVLLPTRELAVQVAEQVK-LYAKHTNLRSAVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  
Sbjct: 128 QGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRIT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y +D V + +A  N   S ++     V   D+  A+  IL+  
Sbjct: 188 LLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQILKER 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G K A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +  + QR    + + 
Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRLVADIEKL 367

Query: 363 ANVSVVWEP 371
               +  EP
Sbjct: 368 IKTKIELEP 376


>gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 616

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 181/555 (32%), Positives = 286/555 (51%), Gaps = 29/555 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L + +      
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILA------ 65

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  PA+  P  L +APTRELA+QV    E    YAK G+ +    GG     + R L+ 
Sbjct: 66  -KIDPAAKHPQLLVMAPTRELAIQVADACEHFMKYAK-GINIVTLYGGQRYDIQLRALKQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF DD+E ++   P++ +  
Sbjct: 124 GAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQTA 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K +  +   V I   N    DI+     V    +++A++  L    
Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNDALLRFLEVED 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDV
Sbjct: 244 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360
           AARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L 
Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++    V       ++A R +  Q  +   L    ++     + D+  A  D E IAA  
Sbjct: 364 KKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDIAAAM 423

Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLS 472
           L +   +  L  P +  P+         R D R        R   KG         + + 
Sbjct: 424 LMLLQGKQKLILPPD-PPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLYRIE 482

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKL 527
           VG     E R ++  +     IN + IG I++  D + VE+   G+  +LL+   +T  L
Sbjct: 483 VGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTVELPQ-GMPKELLQQFGKTRVL 541

Query: 528 DKGIQLKYLGGEKPD 542
           +K +Q+ ++G  + D
Sbjct: 542 NKQMQMSFMGAVQSD 556


>gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
          Length = 612

 Score =  250 bits (638), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 188/581 (32%), Positives = 294/581 (50%), Gaps = 32/581 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L L +      
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLLA------ 65

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  PA+  P  L +APTRELA+QV    E    YAK G+ +    GG     + R L+ 
Sbjct: 66  -KIDPAAKHPQLLVMAPTRELAIQVADACEHFMKYAK-GINIVTLYGGQRYDIQLRALKQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DHI    LN+S LKA+VLDEADEML +GF DD+E ++   P++ +  
Sbjct: 124 GAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEEHQTA 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K +  +   V I   N    DI+     V    ++ A++  L    
Sbjct: 184 LFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNEALLRFLEVEE 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDV
Sbjct: 244 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVVATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360
           AARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L 
Sbjct: 304 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLM 363

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++    V       ++A R +  Q  +   L    ++     + D+  A  D E IAA  
Sbjct: 364 KKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDIAAAM 423

Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLS 472
           L +   +  L  P +  P+         R D R        R   KG         + + 
Sbjct: 424 LMLLQGKQKLILPPD-PPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLYRIE 482

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKL 527
           VG     E R ++  +     IN + IG I++  + + VE+   G+  +LL+   +T  L
Sbjct: 483 VGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDEYSTVELPQ-GMPKELLQQFGKTRVL 541

Query: 528 DKGIQLKYLGGEKPDFR--GYKSSGFKSKNSQ-DGATKRFK 565
           +K +Q+ ++G  + D R  G    G   +N + D    RF+
Sbjct: 542 NKQMQMSFMGAAQSDNRRSGNDFGGKGRRNERGDRGQDRFR 582


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 180/578 (31%), Positives = 302/578 (52%), Gaps = 46/578 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+    G+A+   G+ N T +Q   + P +R   DV+  +QTG+GKTVAFG+     +  
Sbjct: 10  NLSDETGQAIEAMGFDNATDIQAQSI-PLIRAGYDVIGRSQTGTGKTVAFGVPAVELIDT 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123
           E  R    +    L + PTRELAVQ   E+E +   K GV      GG  + R+   L+ 
Sbjct: 69  EELR----NKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKR 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA+IVVGTPGR+ DH+R + L + HLK ++LDEADEML++GFR+D+E IL  +P +R+ +
Sbjct: 125 GANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTI 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L K YQKD   + I  +     +I+ +   V +  + +A+  IL+YH 
Sbjct: 185 LFSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHD 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+FC+T+  V   T  L    +    L G++ Q +R+  +   + GR ++ +ATDV
Sbjct: 245 PALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF--- 360
           AARGID+ +++ VI+ ++  N E  +HR GRTGRAG++G +V +   + +R+ + L+   
Sbjct: 305 AARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTIC--SGRRQVDELYHIV 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-HDPEKIA 417
           R    ++  E  PS + I  R  + ++   +     + +   K++ + L+ K ++P  IA
Sbjct: 363 RMTKSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEELYYKEVAEELVQKGYNPTTIA 422

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKGSSWFSLSVGSK 476
           A  L +       P+   P        +FR      K G  G R +F+      +++G +
Sbjct: 423 AVALEM---AFGRPKTDFPEI-----KQFRP-----KAGLQGPRGSFR---KIEINIGRE 466

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG------ 530
                  ++  +   S ++ + IG I +  D T V +    ++    TVK   G      
Sbjct: 467 NHIAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIE---STVKAMDGCKICGK 523

Query: 531 --IQLKYLGGE---KPDFRGYKSSGFKSKNSQDGATKR 563
             + +   GG+   +PD+R   + G++ +N++   T R
Sbjct: 524 PTVTVALKGGDTAKRPDYRPGGNRGYRPRNNRKPRTSR 561


>gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
 gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 166/516 (32%), Positives = 272/516 (52%), Gaps = 37/516 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY   T +Q   +   +  +D+L  AQTG+GKT AF + + + + + N    
Sbjct: 7   ILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDSGNKHLQ 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 A+ + PTRELA+QV  E+  L     G+ +    GG  + ++ + L+ GA I+V
Sbjct: 67  ------AVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGAQIIV 120

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K +    +K +VLDEADEMLD+GFRDDIE IL   P++R+ ++FSAT+
Sbjct: 121 GTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLFSATM 180

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  + + YQK A  + IA +     +I+     V  + +D  +  IL  +  + +IV
Sbjct: 181 PKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNYKDEILSRILDMYNPELSIV 240

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V      L    +    L G+L QQ+R   +   R+G+  + +ATDVAARGID
Sbjct: 241 FCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDVAARGID 300

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  ++LVI+ +L  + E  +HR GRTGRAG+ G+++  +      + + + R  +  +  
Sbjct: 301 VKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYCHTKIRL 360

Query: 370 EPAPSVEAIRERDAQRILQDPLF--LDSIQGDE--KKMVDVLLAKHDPE-----KIAAGF 420
           +P PS++     D      D LF  L  I  +E   KM +++  K + E      +AA F
Sbjct: 361 KPVPSLD-----DVTNTRVDSLFDELSEIIENEDLTKMTELIEQKVNEEDFTSLDVAAAF 415

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L+++   L + E        +G D    DS       GS ++  G     +++G K + +
Sbjct: 416 LKLY---LSSKES-------NGEDNSELDSEF----TGSTES--GMVRLFINIGKKDRVK 459

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              ++  +   SGI+ + +G I++    TFVEV A+
Sbjct: 460 PGDILGAIAGESGISGKLVGEIQMYDKYTFVEVPAE 495


>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
           86-028NP]
          Length = 613

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 193/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q+A +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA  G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536

Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K   L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQEYRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536

Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K   L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
 gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
          Length = 603

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 175/551 (31%), Positives = 286/551 (51%), Gaps = 31/551 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I  +++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L L + +  E 
Sbjct: 13  LPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDPEQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E       G+      GG     + R L+NGA
Sbjct: 73  ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+       ++   + ++  AL+G+++QQ R  AL+ ++ GR  V +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + +  E L ++
Sbjct: 307 RGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               V   P P+ E + E+  ++    +   L    ++   + + D+  A  D E++AA 
Sbjct: 367 PIDEV---PVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSL 471
            + +   +  L  P   EI P    + R + R++ R+ +  GG R+    N      + +
Sbjct: 424 MMMLLQEKQKLILPPDPEIRPSR--AERGKGRENPRSAERRGGGREHRDNNGVAMDLYRI 481

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVK 526
            +G +   E R ++  +     IN + IG I++    + +E+       L     ++   
Sbjct: 482 ELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARV 541

Query: 527 LDKGIQLKYLG 537
           L K +Q+ +LG
Sbjct: 542 LSKPMQMSFLG 552


>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 528

 Score =  249 bits (637), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 270/524 (51%), Gaps = 35/524 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  NI + +  A+ E G+   + +QE ++   L   D++  AQTG+GKT AFG+ +
Sbjct: 1   MMTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   ++        A+ + PTRELA+QV  E++ L     V      GG S+ ++ 
Sbjct: 61  L-------EKLKRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  K L++S +   VLDEADEMLD+GF +DIE I+  S +
Sbjct: 114 KQLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  L+  Y     +V I+        I+     V   ++ +++  +
Sbjct: 174 ERQTLLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEKNKLDSLCRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  VS   + L    ++   L G+L+Q +R + ++  RD      
Sbjct: 234 IDSENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  V++ ++  +PE+ +HR GRTGRAGR+G+++ ++     +    
Sbjct: 294 IATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK------KMVDVLLAKHD 412
           +  E  + +  +  PSVE + E+  Q+ +     +D I+ D++       +V  LL  + 
Sbjct: 354 IENEIKMKIPSQNLPSVEEVIEK--QQDVWKSQVIDMIENDDEGVSHYDAIVTDLLDHYQ 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           PEK+    +++              +  S  ++   ++  F   G      KG + F ++
Sbjct: 412 PEKVVTALMKL--------------AFYSHDEKISKETYNFGETGAQ----KGMTRFFIN 453

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           VG       + L+  + +  GI+ ++IG I +  + TF+EV  +
Sbjct: 454 VGRNVDMTPKKLVDEVAKLVGISPKAIGKIDIFENFTFIEVPEE 497


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536

Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K   L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 175/515 (33%), Positives = 270/515 (52%), Gaps = 24/515 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +  E     P  
Sbjct: 29  ALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQRMPDER----PTG 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+AL + PTRELAVQV           G  V    GG  + R+ R L NG  +VV TPG
Sbjct: 85  DPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNGVDVVVATPG 144

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DHI    L + +L  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I
Sbjct: 145 RALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVLFSATMPSRI 204

Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+ +  D VR+ IA E     +   +   A LVA + +  A+  +L       AIVF
Sbjct: 205 DGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDVESPTAAIVF 264

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+
Sbjct: 265 CRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVATDVAARGLDV 324

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +
Sbjct: 325 EQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRITID 384

Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426
             P+V  +R R     Q  L++ L  D +    + +V+ L  + D  ++A   +++ H A
Sbjct: 385 KIPTVADLRTRRLELTQAALRESLLEDDLD-PFRVIVETLSDEFDLMEVALAAVKLAHEA 443

Query: 427 GLC----APEEITPVSLVSGRD-RFRDDSRAFKVGGG---SRDNFKGSSWFSLSVGSKQK 478
            L     A EEI  V++ + R+ R   D+R    GG    +R    G++   + +G +  
Sbjct: 444 TLPGAEEAAEEIPQVAVRAPRETRPGADAR----GGDRRPARPRANGTTQVFIGLGRRAG 499

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              + L+  +   +GI  + IG+I +    + VEV
Sbjct: 500 VRPQDLVGAITGETGIRGRDIGSIEIADRFSLVEV 534


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 263/505 (52%), Gaps = 35/505 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY   T +QE  +   L   DV+  AQTG+GKT AF L +   L  E         
Sbjct: 17  LGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPIVQRLRDER-------V 69

Query: 75  PLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P AL +APTRELA+QV   + + Y K   + VA   GG  ++R+ R L+ G  +VVGTPG
Sbjct: 70  PQALILAPTRELAMQVAEAI-YKYGKGRRISVAPVYGGQPIYRQLRALEQGVQVVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   L +  +  VVLDEADEMLD+GF +DIEFIL  +P++R+  +FSAT+  A+
Sbjct: 129 RIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQQRQTALFSATMPEAV 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L + Y +DA R++IA+E             V   ++ +A+  IL      +AI+FC T
Sbjct: 189 QGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRILDVETPSSAIIFCRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R+      + L    +    L G++SQ +R   ++  R+G+A + +ATDVAARG+D+PD+
Sbjct: 249 RSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELLVATDVAARGLDIPDV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++ ++PE  +HR GRTGRAGR G+++ +I    +R  + + R +   +  +  P
Sbjct: 309 THVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQIIERASRSRIQRQKLP 368

Query: 374 SVE--AIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIHRAGL 428
           S+   A R R+A R   D L     QGD      MV+ +  +HD   +AA   ++    +
Sbjct: 369 SLADVAARRREAFR---DALREVLEQGDLDPYILMVEEMSEEHDAVDLAAAAFKLLLNEV 425

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
              E IT V                   G +     G     L VG   +     ++  +
Sbjct: 426 EQGETITSVE------------------GDAAGVEPGMQRLFLDVGRFDRIRPSDIVGAI 467

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
               G++ +SIG+I +    +FVEV
Sbjct: 468 ANEVGLSGKSIGSIDIYDRFSFVEV 492


>gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
 gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
          Length = 590

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 177/583 (30%), Positives = 286/583 (49%), Gaps = 33/583 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+S+ G++N + +Q+A +   L  +DVL  AQTGSGKT AF L L S +  + 
Sbjct: 8   LPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLLSKIDLDK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                   P  L +APTRELA+QV    E  +AK   G+ +    GG     + R L+ G
Sbjct: 68  ------KYPQLLVMAPTRELAIQVADACEQ-FAKNLKGINIVTVYGGQRYDIQLRALKQG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR K L++S LKA+VLDEADEML +GF +D+E ++   P+  +  +
Sbjct: 121 AQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPESHQTAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + + ++   + I S  +   DI      V    +  A+V  L     
Sbjct: 181 FSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSYWFVNGFKKSEALVRFLEVEEF 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+   +  T +L  + F+  AL+G+++QQ R   L  +R+GR  + +ATDVA
Sbjct: 241 DAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIVVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361
           ARGID+  + LV++ ++  +PE+ +HR GRTGRAGR G ++  +    + + R  ERL +
Sbjct: 301 ARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRNIERLMK 360

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++ +R    ++ +   L    +      + D+  A    E IAA  +
Sbjct: 361 KTVDEVQIPNHEQLQQVRRDKFRQRITAQLEHHDLDQYRSLLEDIFAADQSQEDIAAAMM 420

Query: 422 RI----HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFSLSVG 474
            +     +  L    EI P    + RDR  D  R        R   +       + + VG
Sbjct: 421 MLLQGKQKLILPPDPEIKPARRENRRDRA-DRERKENPRSAERRGVRNELPMDLYRIEVG 479

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKG 530
                E   ++  +     I+ + IG I++      VE+  +     +   +RT  + K 
Sbjct: 480 RADGVEVGHIVGAIANEGNISSRYIGHIKLYDHYATVELPVEMPKPLLQHFQRTYVVGKP 539

Query: 531 IQLKYL--------GGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           +++  L        G   P  +G +   F +K S  G  ++FK
Sbjct: 540 MKMSLLEMAKNSDEGKHSPRKKGREGESF-TKRSHSGKERKFK 581


>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 526

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/347 (40%), Positives = 204/347 (58%), Gaps = 9/347 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P    +  AL  +G+   T++Q A L   L   DVL  A+TG+GKT+AFGL +A+
Sbjct: 1   MFHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+ R     AP AL + PTRELA+QV  ELEWL  +  VV     GG    ++  D
Sbjct: 61  RLEPESAR---GRAPRALILTPTRELALQVAGELEWLAPEHNVVT--VYGGTGYGKQASD 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGR  D+ +   L +S ++  VLDEADEML+ GF +D+E +L ++P++R
Sbjct: 116 LKRGADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQER 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+     +LA  + +D +R N+ S+  +    D  A+   L+ R   + ++L 
Sbjct: 176 QTLLFSATLPRWAESLAARHLRDPLRANVTSD--ESVSYDEVAIEAPLASRLGVLSDVLH 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            HG   +IVF  T+A V    K L        A+ G+L+Q +R   L+  R  +  V +A
Sbjct: 234 VHGTGASIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVA 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           TDVAARG+D+P+++LV+H      PE   HRSGRTGRAGR G  V +
Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLL 340


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 216/375 (57%), Gaps = 10/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY N T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK   G  V    GG S+H++   L+ G  ++VGT
Sbjct: 73  VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 372 VPSPETVAERRLSRL 386


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536

Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K   L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 277/538 (51%), Gaps = 46/538 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A + P +  +D+L  AQTG+GKT AF L L  ++ A        +
Sbjct: 20  ALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLCSVDAN------LN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    YAK   G  V    GG S++++ + L+ G  +VVGT
Sbjct: 74  APQILVLAPTRELAVQVA-EAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRRGPQVVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P+ R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + ++ V ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 372

Query: 372 APSVEAIRERDAQRI---LQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            PS E++ ER   R+   + D L    LD ++G   ++   L  + D E++AA  L  H+
Sbjct: 373 IPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQL--EVDTEQLAAALL--HQ 428

Query: 426 AGLCAPEEITPVSLVSGRDRF--------------------RDDSRAFKVGGGSRDNFKG 465
             L  P ++ P      RD F                    R DSR      GS D  K 
Sbjct: 429 VQLERPLQL-PAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNFGSADTLKD 487

Query: 466 SSWFSLS-----VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           +   S+      VG         ++  +   + I+ + IG I++   +T V++  DG+
Sbjct: 488 NPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDL-PDGM 544


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 218/372 (58%), Gaps = 7/372 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +ALS +G   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N 
Sbjct: 110 PEIV-KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNA 168

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL L +APTRELA QV  E E+  +   +      GG  + ++ R L  G  +
Sbjct: 169 KHGRGRNPLCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDV 226

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+KR+ +MFSA
Sbjct: 227 AVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSA 286

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           T+   I +L K Y  + + +++  ++ Q     I   ++L     R + I  ++  H   
Sbjct: 287 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAKG 346

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R +  LA   F+  AL G++SQ +R   L   RDG   + +ATDVA
Sbjct: 347 GKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++L+IH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + RE  
Sbjct: 406 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 465

Query: 365 VSVVWEPAPSVE 376
                 P+ +VE
Sbjct: 466 SRFTELPSIAVE 477


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 280/520 (53%), Gaps = 23/520 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+ + + +QE  + P L  KDV+  AQTG+GKT AF + +        ++     
Sbjct: 29  AIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPII-------EKIEANG 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL + PTREL +QV +E+  L    TG+ +    GG  + ++ + L+ G  IVVGTP
Sbjct: 82  LTQALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQIKALKKGVEIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +R + L + +LK VVLDEADEM D+GFRDD++FILD++   R+   FSAT+   
Sbjct: 142 GRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQTCFFSATMGKE 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I+  +K YQK+ V + I ++    + ID   + +  +D++  +  +L  +  + AI+FC+
Sbjct: 202 ISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLKEADKEETLTRLLEINKPRLAIIFCN 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V +  + L++  + V  L G+L Q +R   ++  R+    + +ATDVAARG+D+ D
Sbjct: 262 TKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILVATDVAARGLDVDD 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +++VI+ +L    E  +HR GRT RAGR G+S  +I      R + + +    ++     
Sbjct: 322 VDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERLKAIEKYTKATIKQAQI 381

Query: 373 PSVEAIRERDAQRILQDPLF--LDSIQGDEKK---MVDVLLAKHDPEKIAAGFL--RIHR 425
           PS+  + +R+ +  + D +   L++  G E++   ++ ++   +DP  I+   L  ++++
Sbjct: 382 PSLVQM-DRNLETGVIDDIIEKLENYTGVEREKSILIRLMEKGYDPFVISQVLLSDKLNK 440

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
             L   E+I      +G D  ++ S A K       +   ++ F L+ G         ++
Sbjct: 441 DNLDHHEKI------AGVDTPKEKSTANKKKSNKYKDENMTTLF-LNRGKMDNFTKDKII 493

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             L R + +  + IG IR+Q   +FV+V    V    RT+
Sbjct: 494 KALNRLAHVPNKKIGQIRIQKSYSFVDVEKSVVYECIRTM 533


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           +T  L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 171/549 (31%), Positives = 284/549 (51%), Gaps = 27/549 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L + + +  E 
Sbjct: 13  LPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILAQIDPEQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            R+     P  L +APTRELA+QV    E       G+      GG     + R L+NGA
Sbjct: 73  -RY-----PQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPENHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+       ++   + ++  AL+G+++QQ R  AL  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               V     P+ E + E+   +    ++  L    ++   + + D+  A  D E++AA 
Sbjct: 367 PIDEVAI---PNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSLSV 473
            + +   +  L  P +    +    R + R++ R+ +  G  R+    N      + + +
Sbjct: 424 MMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYRIEL 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLD 528
           G +   E R ++  +     IN + IG I++    + +E+       L     ++   L 
Sbjct: 484 GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARVLS 543

Query: 529 KGIQLKYLG 537
           K +Q+ +LG
Sbjct: 544 KPMQMSFLG 552


>gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 613

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 292/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  +   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTV 525
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFA 536

Query: 526 K---LDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K   L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 167/526 (31%), Positives = 265/526 (50%), Gaps = 40/526 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F N+   + I + L E G+   T +Q+  +   L   D++  AQTG+GKT AF + + 
Sbjct: 8   KLFGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI 67

Query: 60  STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                  +R +P    +  + I PTRELA+QV  E+  +   + + V    GG S+ R+ 
Sbjct: 68  -------ERLNPRKREVQTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQI 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH+R + L +  +  V+LDEADEMLD+GF +DIE I+  +P 
Sbjct: 121 RSLRLGVQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  LA+ Y  D   V ++  N     I+         ++  A+  I
Sbjct: 181 ERQTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYEAPEKNKLEALCRI 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+FC T+  V      L    F   AL G+LSQQ+R+  ++  R     + 
Sbjct: 241 LDISDISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR G+++ +I     R+  +
Sbjct: 301 VATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQ 360

Query: 359 LFREANVSVVWEPAPSV--------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +       +  +  PS+        E+I+ER  Q I +  L      G  + +VD L+ +
Sbjct: 361 IENITKTHIKRQKLPSIADVVERQKESIKERLIQIINEGKL------GYYRSVVDALVDE 414

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +DP  IAA  L++         ++ P S         +D     V  G+     G     
Sbjct: 415 YDPMDIAAAALKLSM-------DLEPNS---------EDVNLNTVNFGNTGARPGMVRLF 458

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           L++G K +     ++ ++   SGI+   IG I +  + +FVEV  D
Sbjct: 459 LTLGRKDRVTPPEIIKLVSDESGISGGQIGNINIYENFSFVEVPED 504


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFIAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           +T  L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 220/372 (59%), Gaps = 7/372 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +ALS +G   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N 
Sbjct: 113 PEIV-KALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNA 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL L +APTRELA QV  E E+  +   +      GG  + ++ R L  G  +
Sbjct: 172 KHGRGRNPLCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDV 229

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+KR+ +MFSA
Sbjct: 230 AVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSA 289

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T+   I +L K Y  + + V++  ++ Q  +D      ++A S    +I+  L    AK 
Sbjct: 290 TMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKG 349

Query: 247 A--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R +  LA   F+  AL G++SQ +R   L   RDG   + +ATDVA
Sbjct: 350 GKCIVFTQTKRDADRLSYALARS-FKCEALHGDISQSQRERTLAGFRDGHFNILVATDVA 408

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++L+IH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + RE  
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468

Query: 365 VSVVWEPAPSVE 376
                 P+ +VE
Sbjct: 469 SRFTELPSIAVE 480


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 170/549 (30%), Positives = 282/549 (51%), Gaps = 27/549 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L + + +  E 
Sbjct: 13  LPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILAQIDPEQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E       G+      GG     + R L+NGA
Sbjct: 73  ------RHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNGFRKNDALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+       ++   + ++  AL+G+++QQ R  AL  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLIKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               V     P+ E + E+   +    ++  L    ++   + + D+  A  D E++AA 
Sbjct: 367 PIDEVAI---PNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSLSV 473
            + +   +  L  P +    +    R + R++ R+ +  G  R+    N      + + +
Sbjct: 424 MMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYRIEL 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLD 528
           G +   E R ++  +     IN + IG I++    + +E+       L     ++   L 
Sbjct: 484 GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARVLS 543

Query: 529 KGIQLKYLG 537
           K +Q+ +LG
Sbjct: 544 KPMQMSFLG 552


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score =  247 bits (630), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 216/375 (57%), Gaps = 10/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK   G  V    GG S+H++   L+ G  ++VGT
Sbjct: 73  VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ +++G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 372 VPSPETVAERRLSRL 386


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/369 (37%), Positives = 220/369 (59%), Gaps = 11/369 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L+++G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N+++ 
Sbjct: 109 IVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPILDAIIRHNEKYK 168

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
           P   PLA+ +APTRELA QV RE    +  +  +  +C+ GG  + ++ R L  G  +V+
Sbjct: 169 PGKFPLAIVLAPTRELAKQVERE----FLDSSPLETLCVYGGTPIMQQIRQLNYGVDVVI 224

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D ++   L+++ ++ VVLDEAD+ML +GF  D+E IL+  P +R+ LMFSAT+
Sbjct: 225 GTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVPPQRQTLMFSATM 284

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHG-AKN 246
              I  L + Y    V V++  E+ Q        + V+  +R    V   +++ H     
Sbjct: 285 PTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGELIKEHAKGGK 344

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+    R +  ++   FQ  AL G++SQ +R   L   RDGR  + IATDVAAR
Sbjct: 345 CIVFTQTKRDADRLSHSMSRS-FQCEALHGDISQSQRERTLGGFRDGRFNILIATDVAAR 403

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ V+    Q RA R+  E +V 
Sbjct: 404 GLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAI-VMYNYEQSRAVRVI-ERDVG 461

Query: 367 VVWEPAPSV 375
             +   P +
Sbjct: 462 CKFTELPKI 470


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 168/542 (30%), Positives = 278/542 (51%), Gaps = 36/542 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M+ F+N+     I EAL ++G+ N T +QE  + P L E  +D++  AQTG+GKT AFG+
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAI-PILIEGKRDIVGQAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +  T+  E+ R + A     L +APTRELA+QV  E++ +     + V    GG S+ R
Sbjct: 60  PILETI-DEHSRNTQA-----LILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDR 113

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S 
Sbjct: 114 QIRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              +RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   + 
Sbjct: 174 STDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        ++FC T+A V      L E  +    L G+++Q +R   L   +  +  
Sbjct: 234 RIIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKIN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G ++  +  +  R+ 
Sbjct: 294 VLVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKF 353

Query: 357 ERLFREANVSVVWEPAPSV-------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + + + A   +  E  P V       +       + +L+   + D      +KM   LL 
Sbjct: 354 KYIQKIAKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADC-----EKMASDLLE 408

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--RDDS---RAFKVGGGSRDNFK 464
             DP+++ +  L+       +      +   S R     R+DS   R+F  G   R    
Sbjct: 409 DADPQEVLSAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVR---- 464

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +++G   K   + L+  + R S +  + I  ++V    +FV VS+   +++  +
Sbjct: 465 ----LFVALGKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDS 520

Query: 525 VK 526
            K
Sbjct: 521 FK 522


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score =  246 bits (629), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+ +   +   N 
Sbjct: 18  PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           +         + ++PTRELA+QV  E+  L AK   GV +    GG  + R+ + L+ GA
Sbjct: 77  KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
            I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+  P++ R+ ++
Sbjct: 130 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   +  +L Y+  
Sbjct: 190 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+  + IATDVA
Sbjct: 250 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      + + + R   
Sbjct: 310 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 369

Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             +V  P PS + + +  A+       RI+ +    D+I   EK++ +      D   IA
Sbjct: 370 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 426

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A FL+         + +  ++L    D  R+DS  F   G      +G     +++G K 
Sbjct: 427 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 469

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + +   ++  +   SG+  + +GAI +    TFVEV
Sbjct: 470 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 505


>gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 613

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 290/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA  G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           +T  L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+ +   +   N 
Sbjct: 13  PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           +         + ++PTRELA+QV  E+  L AK   GV +    GG  + R+ + L+ GA
Sbjct: 72  KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
            I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+  P++ R+ ++
Sbjct: 125 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   +  +L Y+  
Sbjct: 185 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+  + IATDVA
Sbjct: 245 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      + + + R   
Sbjct: 305 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 364

Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             +V  P PS + + +  A+       RI+ +    D+I   EK++ +      D   IA
Sbjct: 365 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A FL+         + +  ++L    D  R+DS  F   G      +G     +++G K 
Sbjct: 422 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 464

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + +   ++  +   SG+  + +GAI +    TFVEV
Sbjct: 465 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 500


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 163/516 (31%), Positives = 269/516 (52%), Gaps = 38/516 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+ +   +   N 
Sbjct: 36  PQVL-RAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 94

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           +         + ++PTRELA+QV  E+  L AK   GV +    GG  + R+ + L+ GA
Sbjct: 95  KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKILPVYGGQEISRQIKALKGGA 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
            I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+  P++ R+ ++
Sbjct: 148 QIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVL 207

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   +  +L Y+  
Sbjct: 208 FSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEVLTRLLDYYNP 267

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+  + IATDVA
Sbjct: 268 KLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGKTEILIATDVA 327

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      + + + R   
Sbjct: 328 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCK 387

Query: 365 VSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             +V  P PS + + +  A+       RI+ +    D+I   EK++ +      D   IA
Sbjct: 388 TKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESDYTAMD---IA 444

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A FL+         + +  ++L    D  R+DS  F   G      +G     +++G K 
Sbjct: 445 AAFLK---------QALGQINL----DNDREDSFDFDNTGAE----EGMVRLFINIGKKD 487

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + +   ++  +   SG+  + +GAI +    TFVEV
Sbjct: 488 RVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEV 523


>gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 613

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 290/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA  G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           +T  L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 182/554 (32%), Positives = 278/554 (50%), Gaps = 27/554 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473
            +   +  L  P +  P+         R D R        R   KG         + + V
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRREHNERGDRRENPRSAERRGERKGYGNPRPMDLYRIEV 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528
           G     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T  L+
Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542

Query: 529 KGIQLKYLGGEKPD 542
           K +Q+ +LG  K D
Sbjct: 543 KQMQMSFLGAVKSD 556


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 278/538 (51%), Gaps = 29/538 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  +L   D++  AQTG+GKT AFG+ L       
Sbjct: 10  NLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQ----- 64

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
             +  P S  L A+ + PTRELA+QV  E+  L     GV V    GG  + R+ R L++
Sbjct: 65  --KVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++GTPGR+ DH+R K L + H+  VVLDEADEML++GF +D+E IL   P++R+ +
Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT+ PAI  +AK +QKD   V +  +      +      V    +   +  +L  + 
Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + IATDV
Sbjct: 243 PKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R  
Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQRYC 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVD-----VLLAKHDPEKI 416
              ++ +P PS+  +     ++I+   + +  DS   D  K+++     VL   +    +
Sbjct: 363 KTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDS---DLDKIINIVEKRVLEEDYTTLDL 419

Query: 417 AAGFLRIHRAGLCAPEEI----TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW---- 468
           AA  L++        E+I    TP+  +   + +   +R+   G G+R   +G S     
Sbjct: 420 AAALLKMSMGD--DYEDISVERTPLRSLDELEDYERGARSRNNGRGARSGSRGGSENVAR 477

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + +K
Sbjct: 478 LFINIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMK 535


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 167/519 (32%), Positives = 264/519 (50%), Gaps = 35/519 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119
           +   N           + + PTRELA+Q  +E+  L  Y K   V+AV  GG  + R+ +
Sbjct: 66  IDLNNKSLQ------IMVLCPTRELAIQATQEVHKLGKYKKDISVLAVY-GGQPIDRQIK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++GTPGR+ DHIR K L   ++K +VLDEADEMLD+GFRDDIE I+   P+ 
Sbjct: 119 ALKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQN 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT++ AI  L+K YQ +A  + +  +     +I+ R + V  +++   +  ++
Sbjct: 179 RQTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +
Sbjct: 239 DMRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   +
Sbjct: 299 ATDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE---- 414
            R     V     PS   + E  A   L+     ++I +G   K +D +    D +    
Sbjct: 359 ERYTKTKVKRAEIPSASDVEEFKANTFLEK--VKNTIEEGHLGKYIDYIENLLDEDYATI 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA  L++   G    EEI  +S         DD        G      G     +++G
Sbjct: 417 DIAAALLKMS-LGEEKKEEILNIS---------DDI-------GDTGAEPGMVRLFINIG 459

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              K +AR ++  +   +GI  + IG I +    TFVEV
Sbjct: 460 RNNKVQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEV 498


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 270/518 (52%), Gaps = 36/518 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   + + G+   T +Q   +   L  +DV+  AQTG+GKT AFG+ +  ++ A + 
Sbjct: 13  PKIL-RGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIPVLESVDASSH 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           +         + ++PTRELA+QV  E+  L AK   GV V    GG  + R+ + L+ G 
Sbjct: 72  KTQ------VIILSPTRELAIQVADEIRKL-AKYMHGVKVLPVYGGQDISRQIKALKGGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGRL DH+R K +   H+K +VLDEADEML++GFR+DIE +L+  P++ + ++F
Sbjct: 125 QIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTVLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + YQ DA+ + I  +    ++ID     V   D+ + +  +L Y+  K
Sbjct: 185 SATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDYYNPK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC+T+  V      L    +    L G++ Q +R   ++  R+G+  + IATDVAA
Sbjct: 245 LSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + +L  + E  +HR GRTGRAGR G +   +      + + + R    
Sbjct: 305 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQRYCKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVL-----LAKHDPEKIAA 418
            +  +P PS + + +  A++I+     + +I  +E    ++D++      + +    IAA
Sbjct: 365 KIYAQPIPSSDDVAKIRAEKIMDQ---ISTIIDEENLTSVIDIIENQINESDYTAMDIAA 421

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            FL      + A E  T  S        +DD      G        G     ++VG K K
Sbjct: 422 AFL---YQAMGASEISTAES--------KDDYDFHNTGAED-----GMVRLFINVGKKDK 465

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +   ++  +   SG+  + +GAI +    TFVEV A+
Sbjct: 466 IKPGDILGAIAGESGMPGRLVGAIDMYDKYTFVEVPAE 503


>gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
 gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
          Length = 600

 Score =  246 bits (627), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 303/588 (51%), Gaps = 35/588 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L +    LA+ 
Sbjct: 13  LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPI----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YAK G+ +    GG     + R L+ G
Sbjct: 69  D--PTEKHPQLLVMAPTRELAIQVADACEQFVKYAK-GINIVTLYGGQRYDIQLRALKQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DH+R   L+++ LKA+VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 126 AQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K + KD   V I +  +   DI      V    +++A++  L     
Sbjct: 186 FSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDALLRFLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +ATDVA
Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 306 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 365

Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + N+  V  P   V +A R +  +  +   L    ++   + + D+  A    E IAA  
Sbjct: 366 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAAM 424

Query: 421 LRIHRAG---LCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKGS------SWFS 470
           + + +     +  P+ +  V   + RDR  R D R        R   KG         + 
Sbjct: 425 MMLLQGKQKLILPPDPV--VDKKARRDRNERSDRRENPRSAERRGERKGYGSPQPMDLYR 482

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTVK-- 526
           + VG     E R ++  +     IN + IG I++  D + +E+   G+  +LL++  K  
Sbjct: 483 IEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFAKTR 541

Query: 527 -LDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFKGAS 571
            L+K +++ ++G  K + RG  + G K +    +D   K  ++FK  S
Sbjct: 542 VLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDKGFKGDRKFKEKS 588


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 215/375 (57%), Gaps = 10/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------A 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK   G  V    GG S+H++   L+ G  ++VGT
Sbjct: 73  VPQILVLAPTRELAVQVAEAFSS-YAKFMKGFHVLPIYGGQSMHQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 372 VPSPETVAERRLSRL 386


>gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
          Length = 614

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 189/602 (31%), Positives = 295/602 (49%), Gaps = 52/602 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA  G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQPMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPDF-------------RGYKSSGFKSKNSQDGATKRFKRFKG 569
           +T  L+K +Q+ +LG  K D              RG    G + +N ++G  +  ++F  
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRNERNGDNRGNRKFNE 596

Query: 570 AS 571
            S
Sbjct: 597 KS 598


>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
 gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
          Length = 603

 Score =  246 bits (627), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 173/551 (31%), Positives = 284/551 (51%), Gaps = 31/551 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I  +++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L L + +  E 
Sbjct: 13  LPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDPEQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E       G+      GG     + R L+NG 
Sbjct: 73  ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIRALKNGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPEDHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+       ++   + ++  AL+G+++QQ R  AL+ ++ GR  V +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + +  E L ++
Sbjct: 307 RGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNIEHLIKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               V   P P+ E + E+  ++    +   L    ++   + + D+  A  D E++AA 
Sbjct: 367 PIDEV---PVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSL 471
            + +   +  L  P   EI P    + R +  ++ R+ +  GG R+    N      + +
Sbjct: 424 MMMLLQEKQKLILPPDPEIRPSR--AERGKGHENPRSAERRGGGREHRDNNGVAMDLYRI 481

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVK 526
            +G +   E R ++  +     IN + IG I++    + +E+       L     ++   
Sbjct: 482 ELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKARV 541

Query: 527 LDKGIQLKYLG 537
           L K +Q+ +LG
Sbjct: 542 LSKPMQMSFLG 552


>gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae]
 gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 613

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 291/585 (49%), Gaps = 42/585 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q+A +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA  G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAH-GSRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSS 467
            +   +  L  P    P   +  R R R+D             R  + G G   N +   
Sbjct: 425 MLLQGKQKLILP----PDPPMEKRRRERNDRGDRRENPRSAERRGERKGYG---NPQAMD 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR--- 522
            + + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   
Sbjct: 478 LYRIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFG 536

Query: 523 RTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           +T  L+K +Q+ +LG  K D  RG  S  F  K    G+  R +R
Sbjct: 537 KTRVLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGSDFRGER 579


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 275/536 (51%), Gaps = 25/536 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  +L   D++  AQTG+GKT AFG+ L       
Sbjct: 10  NLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQ----- 64

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
             +  P S  L A+ + PTRELA+QV  E+  L     GV V    GG  + R+ R L++
Sbjct: 65  --KVDPKSKKLQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRSLKD 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++GTPGR+ DH+R K L + H+  VVLDEADEML++GF +D+E IL   P++R+ +
Sbjct: 123 GIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEERQTV 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT+ PAI  +AK +QKD   V +  +      +      V    +   +  +L  + 
Sbjct: 183 MFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + IATDV
Sbjct: 243 PKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R  
Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQRYC 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVD-----VLLAKHDPEKI 416
              ++ +P PS+  +     ++I+   + +  DS   D  K+++     VL   +    +
Sbjct: 363 KTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDS---DLDKIINIVEKRVLEEDYTTLDL 419

Query: 417 AAGFLRIHRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----FS 470
           AA  L++           E TP+  +   + +   +R    G G+R   +G S       
Sbjct: 420 AAALLKMSMGDDYEDISVERTPLRSLDELEDYERGARNRNNGRGARSGSRGGSENVARLF 479

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + +K
Sbjct: 480 INIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMK 535


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 163/522 (31%), Positives = 265/522 (50%), Gaps = 41/522 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120
           +  +N           + + PTRELA+Q  +E+  L   K G+ V    GG  + R+ + 
Sbjct: 66  IDLDNKSLQ------IMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++GTPGR+ DHIR K L   ++K +VLDEADEMLD+GFRDDIE I+ + P+ R
Sbjct: 120 LKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT++ AI  L+K YQ +A  + +  +     +I+ R + V  +++   +  ++ 
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +A
Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPE- 414
           R     V     PS   + E       +   FL+ ++G  +     K +D +    D + 
Sbjct: 360 RYTKTKVKRAEIPSASDVEE------FKVNAFLEKVKGTIEEGHLGKYIDYIENLLDEDY 413

Query: 415 ---KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
               IAA  L++   G    EEI  ++   G      D+ A            G     +
Sbjct: 414 ATIDIAAALLKMS-LGEEKKEEILDINEEIG------DTGA----------EPGMVRLFI 456

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++G   K +AR ++  +   +GI  + IG I +    TFVEV
Sbjct: 457 NIGRNNKIQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEV 498


>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 602

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 175/573 (30%), Positives = 288/573 (50%), Gaps = 44/573 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GYV  + +Q A +   ++ KDVL  AQTGSGKT AF L L   +  +     
Sbjct: 17  IITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L + PTRELAVQV         K  GV V    GG     + + L+ G  I+V
Sbjct: 72  -VRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++ + L++S+L ++VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  +++ + K+   + I S      DI  ++  +    + +A++  L        I+
Sbjct: 191 PEAIRRISRRFMKNPKEIRIQSNITTRPDIQ-QSYWMVYGKKTDALIRFLEAEDFSATII 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +    ++VL  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 250 FVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILIATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  VI+ ++  + E+ +HR GRTGRAGRKG ++  +    +R    + R  N+S+  
Sbjct: 310 VDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNIERAMNISISE 369

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV--LLAKHDP-------EKIAAGF 420
              P  + + +R  ++  Q       IQ D K + +   LL K  P       E +AA  
Sbjct: 370 VNLPKSDFLSKRRLEKFAQKV----QIQLDSKDLHEYRGLLPKLQPNNNSLDIESLAAAL 425

Query: 421 LRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFK----VGGGSRDNFKGSSWFSLSV 473
           L++    R+ +  PE I     +  +D +R+++  +K    V   +RD  K    + + V
Sbjct: 426 LKMAQGERSLIVKPESIVRARHLKIKDTYRNNN--YKSLNYVSRYNRD--KNVDLYRIDV 481

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDK 529
           G     E R ++  +     I+ + IG +R+  + + +E+     + L     RT  L+K
Sbjct: 482 GRNDGVEVRHIVGAIANEGDISSRKIGNVRLFSNYSTIELPKGLSNTLPKTFIRTKILNK 541

Query: 530 GIQLKYLGGEK--------PDFRGYKSSGFKSK 554
            I +K L             D + Y S+  +SK
Sbjct: 542 FINIKLLYNSNFKGNYNDIKDVKVYNSNKLRSK 574


>gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846]
          Length = 613

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 287/579 (49%), Gaps = 30/579 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473
            +   +  L  P +  P+         R D R        R   KG         + + V
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNDRGDRRENPRSAERRGECKGYGNPQPMDLYRIEV 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528
           G     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T  L+
Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542

Query: 529 KGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 543 KQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 647

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 277/534 (51%), Gaps = 44/534 (8%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A
Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +       
Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409

Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459
             L+K D  K         FL  +R      EEI TP  +   R+R   DSR      GS
Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETPTDI---RERNTRDSRE----RGS 458

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           R    G +   +++G         L+ +L  S+   R  +G I +  + +F EV
Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 183/549 (33%), Positives = 267/549 (48%), Gaps = 51/549 (9%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T +QE  +   L   D++  AQTG+GKT AFGL L +     N  FS    
Sbjct: 70  LVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLN-----NIDFSKKCV 124

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTRELA QVG  L       G  V V  GG S   +   L+ GA +VVGTPGR
Sbjct: 125 Q-ALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRGARVVVGTPGR 183

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D IR   L +  LK +VLDEADEML +GF DDIE IL  +PK R+ ++FSAT+S  + 
Sbjct: 184 LLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLFSATLSSRVM 243

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           ++A  Y      ++I+ +    S I+ R  L+  SD+  AI  +      ++A++F  TR
Sbjct: 244 SIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVESALIFARTR 303

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           A+VS     L    F    LSG+LSQ+ R+  L   + G+ +V +ATDVAARG+D+ D+ 
Sbjct: 304 ATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAARGLDIDDIS 363

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            V + +L  +PE  +HR GRTGRAGR G ++ ++    +    R+ +     ++    P+
Sbjct: 364 HVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGKKLIKGELPT 423

Query: 375 VEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAGLCAP 431
           VE I E    + L+  D          E+++V+ L+ +  DP  +AA  L+I R      
Sbjct: 424 VEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVEQGMDPLDVAAAALKIVRKDETK- 482

Query: 432 EEITPVSLV----SGRDR-----------------FRDDSRAFKVGGGSRDNF------- 463
             I P+  V     GR+R                  R DSR  +  G   D F       
Sbjct: 483 RPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRRDDRFAKGGDRG 542

Query: 464 ---KGSSW----------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
              KG              +L  G K       ++  L   +GI+ + +G IR+    + 
Sbjct: 543 PKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKIRINETHSS 602

Query: 511 VEVSADGVD 519
           ++V    VD
Sbjct: 603 IDVPKGLVD 611


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 166/508 (32%), Positives = 263/508 (51%), Gaps = 34/508 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALSE G+   + +Q+A +   +   D++  AQTG+GKT AFG+ +   +   N +F   
Sbjct: 20  QALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKV---NPKFQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL + PTRELAVQV  E+  +     +      GG S+ R+ R L+ G+ +VVGTP
Sbjct: 75  -AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGSQVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           GR+ DH+    L + ++K VVLDEADEMLD+GF +DIE IL   PK+ R++++FSAT+ P
Sbjct: 134 GRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVMLFSATMPP 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNA 247
            I  LA+NY      V ++ +      I+     V    RD    +A+  I+       A
Sbjct: 194 EIKKLAQNYMHQPKSVAVSRDELTVPLIEQ----VFYEARDKIKVDALCRIIDMEDIGQA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V      L    +   AL G+LSQQ+R   ++  RDG+  + +ATDVAARG
Sbjct: 250 IIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG ++ ++     R+   + R     +
Sbjct: 310 LDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIKTRI 369

Query: 368 VWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           + +  P++  + ER A+ +      +   S  G  + +V  LL ++D   +AA  L+   
Sbjct: 370 IRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALKF-- 427

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                      V  V  R    DD     +  G+     G     +++G  Q+   + ++
Sbjct: 428 ----------AVEGVEERSEEEDD-----IAFGNTGAAPGMVRLFMNIGRLQQVRPQDIV 472

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             +   SGI    IG I +    TFVE+
Sbjct: 473 RWIADESGIPGNIIGMINIYDKFTFVEI 500


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 251/454 (55%), Gaps = 20/454 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + ++++  G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPLVEKIDTK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N           L IAPTRELA+QV  EL  +     V V    GG  ++R+ R ++ G 
Sbjct: 68  NTNVQ------GLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQIRAMKKGP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGRL DHI  + L +  +  +VLDEADEML++GF DDIE IL + P+ R+ L+F
Sbjct: 122 HIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPEGRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+N+  +   V + S+    S ID   V     ++ + +  +L     +
Sbjct: 182 SATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVKAQEREKFDILARLLDTQSPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V   +K L+   +Q   + G+LSQ +RS+ L+  ++GR  V +ATDVAA
Sbjct: 242 LAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M   R  E+    
Sbjct: 302 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEQT--- 358

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDE-KKMVDVLLAKHDPEKIAAG 419
            N  +     PSV    E   QR+ ++ L   ++S   DE +K+V  LL ++ PE++ A 
Sbjct: 359 TNKRMTPMRPPSVNEALE-GQQRLAKEKLVEAINSNGLDEYEKLVAELLGEYTPEQVIAA 417

Query: 420 FLRIH-RAGLCAPEEIT---PVSLVSGRDRFRDD 449
            L++  +     P EIT   P+     R R  +D
Sbjct: 418 SLKLFTKEPDKTPIEITEERPLPFKGERPRRNND 451


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 227/412 (55%), Gaps = 9/412 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + L ++G+   T +Q+  +   L EK DV+  A+TG+GKT AFG+ +  T+  E+D    
Sbjct: 18  DVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPILETV-DEHD---- 72

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            S   AL +APTRELAVQV  E+  +   +G+ +A   GG S+  + R L  G  IVVGT
Sbjct: 73  -STVQALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLRQLHRGVQIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    LN+ +LK +VLDEADEMLD+GF +DIE IL  +P  +RML FSAT+  
Sbjct: 132 PGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPADKRMLCFSATMPA 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ + KD   V + S++  +   +     V  SD+  A+  ++        +VFC
Sbjct: 192 PIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVRESDKLEALCRVIDVAVDFYGLVFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+      T+ L        AL G+LSQ++R   L   R  +  V +ATDVAARGID+P
Sbjct: 252 RTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLVATDVAARGIDIP 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           DL  VI+  +  NPE  +HR GRTGRAGR G +V  I      + + + R A+  +  E 
Sbjct: 312 DLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYIQRIAHTEIHRET 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSI-QGDE-KKMVDVLLAKHDPEKIAAGFL 421
            P++  I E    RI  +   L ++ + D+ + +   LL  H  E + A  L
Sbjct: 372 VPAISDIMEAKRNRIATETESLLTVAESDQFRPLARHLLESHAAEDVVAALL 423


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 141/347 (40%), Positives = 206/347 (59%), Gaps = 6/347 (1%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+    P+++  ALS++GYV+ T +Q   +   L+  DV+ +AQTG+GKT  F L +  
Sbjct: 38  FEDFGLAPEIL-RALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQ 96

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+A  N   SPA  P+ AL + PTRELA QV   ++     T +   V  GGV +  + 
Sbjct: 97  LLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQT 156

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  IV+ TPGRL DHI+ K LN+S  + +V+DEAD MLD+GF  D++ I++  PK
Sbjct: 157 AALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 216

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT SP I  LA  + KD V + +A  N    ++      V   D+ +A+  I
Sbjct: 217 QRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYI 276

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R  G K  IVF +T+   SR  + L     +  A+ G+ SQ ER  AL+  ++G   V 
Sbjct: 277 IRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVL 336

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++
Sbjct: 337 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 383


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 162/514 (31%), Positives = 275/514 (53%), Gaps = 20/514 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+V++T +QE  +   +   D++  +QTG+GKT+AF +     +  E        
Sbjct: 15  AIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAIEKIDPE------LR 68

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L + PTRELA+QV  E   +  Y+ +  VVAV  GG S+  + RDL++GA IVVGT
Sbjct: 69  KPQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAV-FGGASIENQIRDLKSGAQIVVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K L  + L   VLDEADEML++GFR+DIE ILD+     + ++FSAT+  
Sbjct: 128 PGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDHDVQTVLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ YQK+   + I+ +      I+ +   ++  ++  A+  +L  +  + +++FC
Sbjct: 188 PILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRLLDVYKPQRSLIFC 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V   T+ L E  + V  + G++ Q  R N L+    GR ++ +ATDVAARGID+ 
Sbjct: 248 NTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKILVATDVAARGIDVD 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+++V + ++  N E  +HR GRTGRAG+ G+S+ +     Q +  ++      S+  + 
Sbjct: 308 DVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRDQFKLRKITDYTKKSIERDL 367

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFLRIHRAG 427
            P+ E I +       ++   L + +G+ ++ + ++       ++ E IAA  L+  +  
Sbjct: 368 IPTSEVINDIKIAH-FKERFKLKAEKGELERYIAIIQELEEKGYEAEFIAAVLLQ-AQLP 425

Query: 428 LCAPEEITP---VSLVSGRDRFRDDSRAFKVGGGSRDNF--KGSSWFSLSVGSKQKAEAR 482
           L   E++             R RD  R  +V GG   +F  + +    +SVG K K + R
Sbjct: 426 LSDAEDLNTEFKKRGRREGRRERDGKRRREVKGGKGKSFGPEKTKRLFISVGEKDKVQKR 485

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            ++  +C    I   ++G I +    TFV+V  D
Sbjct: 486 DILGAICGECNIASSTVGNIDMYNKFTFVDVDVD 519


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 184/580 (31%), Positives = 306/580 (52%), Gaps = 57/580 (9%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+I   P+++ +A+S+  Y   T +Q   +   ++  DV+  + TG+GKT AFG+    
Sbjct: 6   FEDIGLSPELV-QAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +       S   AP  L ++PTRELA+Q+  E+ ++   K GV VA   GG  +  + R
Sbjct: 65  RIE------SGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIR 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+  A+IV+GTPGR+ DH+R   L +  L+ VVLDEADEML++GF DDI+ IL  +P  
Sbjct: 119 ALR-AANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDT 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ PAI  +   +  D   V+I +  R  + ++     V  + + +A+  +L
Sbjct: 178 RQTVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +YH  K A+VFC+T+A V   T+ L++H F+ + + G++ Q  R+  +Q  RDG+ R+ +
Sbjct: 238 QYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358
           ATDVAARGID+ ++E V + ++    E+ +HR GRTGRAGR GMS  ++    Q    R 
Sbjct: 298 ATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQ 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK 410
           L R  N  +   P P  + I    RE+ A R+ +      +++ DE     + +D + A+
Sbjct: 358 LRRFINADIREAPLPIGDEIVRKKREKFAARVAR------TLEADEYGKWGEQLDAIAAE 411

Query: 411 H--DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              D   IA    ++  A     +++ PV  +              V GG R   +  + 
Sbjct: 412 RGCDMRDIACALAQMIAA---RDKKLIPVLKIPA-------PGERPVRGGRRVVLRADA- 460

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR--RTV 525
                G  Q       +  +  +SG+  ++IG I +  D + +E+   D + +L   R+ 
Sbjct: 461 -----GRAQNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDALTVLEAMRST 515

Query: 526 KLDKGIQLKY-LGGEKPDF--RGYKSSG-----FKSKNSQ 557
           ++ +G+++ + L  EKP +  RG  + G     F+ K SQ
Sbjct: 516 RI-RGLEVHFALTSEKPRYAARGGVTCGREKPFFRPKPSQ 554


>gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 647

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 276/534 (51%), Gaps = 44/534 (8%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A
Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +       
Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409

Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459
             L+K D  K         FL  +R      EEI TP      R+R   DSR      GS
Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETP---TDSRERNTRDSRE----RGS 458

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           R    G +   +++G         L+ +L  S+   R  +G I +  + +F EV
Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 239/449 (53%), Gaps = 17/449 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   E I   +   L+ERG    + +Q   L   L+ +D++  A+TG+GKT+AF L +  
Sbjct: 1   MNFNELIAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRER 118
            L    +R   +  P A+ +APTRELA QV  E E    +TG  + V    GG +   + 
Sbjct: 61  GLEPSRER---SRLPRAIVVAPTRELARQVAAEFE----QTGRELTVLTVYGGAAYGPQE 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +VVGTPGRL DH+    L++  +K  VLDEADEML +GF D IE IL ++P+
Sbjct: 114 TALRRGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT++P I  L+  Y  D + V++  E +  +   +++  V V  S R   + 
Sbjct: 174 GRQTLLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLA 232

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +  + AIVF  T+         L    F+  AL G+L+Q +R  AL   R GR  
Sbjct: 233 DLLTVYNPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTS 292

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +     QR  
Sbjct: 293 ILVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDI 352

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-IQGDEKKMVDVLLAKHDPEK 415
             L R   V     P P+   ++E  A    +    +D+       +  + LL +   E 
Sbjct: 353 NGLERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMGAEA 412

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           +A    +I  +G+  P+   P SL+SG +
Sbjct: 413 LARALAKI--SGVTEPQ--APASLLSGEE 437


>gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
 gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
          Length = 647

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 180/534 (33%), Positives = 276/534 (51%), Gaps = 44/534 (8%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RVPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A
Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +       
Sbjct: 353 KLREIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKL 409

Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGS 459
             L+K D  K         FL  +R      EEI TP      R+R   DSR      GS
Sbjct: 410 EWLSKEDLIKRMVSHEFNRFLDYYR----DREEIETP---TDSRERNTRDSRE----RGS 458

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           R    G +   +++G         L+ +L  S+   R  +G I +  + +F EV
Sbjct: 459 RKAAPGFTRLFINLGKMDSFFPSELISLL-NSNTRGRIELGRIDLMKNFSFFEV 511


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/509 (33%), Positives = 265/509 (52%), Gaps = 19/509 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +  +     P   P+AL
Sbjct: 35  GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQRMSVDR----PTGDPVAL 90

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV         + G  V    GG  + R+ R L +G  +VV TPGR  DH
Sbjct: 91  VLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSGVDVVVATPGRALDH 150

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  +  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I  +A+
Sbjct: 151 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 210

Query: 199 NYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+ IA E     +   +   A LVA + +  A+  +L       AIVFC +R 
Sbjct: 211 AHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDIESPTAAIVFCRSRE 270

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+  L  
Sbjct: 271 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMATDVAARGLDVEQLSH 330

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +  P+V
Sbjct: 331 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 390

Query: 376 EAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRAGLCAP 431
             +R R     Q  L++ L  D ++   + +V+ L  + D  ++A   +R+ H A L   
Sbjct: 391 ADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDLMEVALAAVRLAHEATLPGA 449

Query: 432 ----EEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
               EEI  VS+   R  R   + R  +  G  R    G++   + +G +     + L+ 
Sbjct: 450 LDEEEEIPQVSVRPSRTGRPGPEGRGDRRSG--RPRGTGTTQVFVGLGRRAGVRPQDLVG 507

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            +   +G+N + IG+I +    + VEV A
Sbjct: 508 AITGETGMNGRDIGSIEIADRFSLVEVPA 536


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 162/526 (30%), Positives = 263/526 (50%), Gaps = 47/526 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+++ G+   T +Q   +   L   D++  AQTG+GKT AFG+     + +  D   
Sbjct: 15  VQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKIDSHIDSIQ 74

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  L + PTRELA+Q   EL   L  K G+ +    GG  + R+   L+    I++
Sbjct: 75  ------VLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKRPQIII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K L +  LK +VLDEADEML++GFR+DI+ IL+  P+ R+ ++FSAT+
Sbjct: 129 GTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  L K YQKD V + IA +      I+   + V  S +   +  ++  +  K ++V
Sbjct: 189 PKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIKLSLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T  L    F   AL G++ Q+ R   + + R G   + IATDVAARGID
Sbjct: 249 FCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+E V + +L ++ E  +HR GRTGRAGR G +   I      +   + R    ++V 
Sbjct: 309 VDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDIQRYTKSTIVA 368

Query: 370 EPAPSVEAIRERDAQRI---LQDPL--------------FLDSIQGDEKKMVDVLLAKHD 412
              PS+  + E+    I   L+D L              F+D+I  + ++  +  +   D
Sbjct: 369 MKPPSLNEVEEKKMLNILKTLKDNLKDDSISKFVSHIERFIDTINNESEEQGENFVTSLD 428

Query: 413 PEKIAAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              +AA  L+++  ++G   P E+  +         +D  R F                 
Sbjct: 429 ---VAAALLKMYGEQSG-NLPNEVNEIDNAVEPGSNKDMVRLF----------------- 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +++GS+ K + + ++  L  S+G+  + +GAI +    +FVEV  D
Sbjct: 468 INIGSESKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKD 513


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 163/508 (32%), Positives = 260/508 (51%), Gaps = 34/508 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALSE G+   + +Q+A +   +   D++  AQTG+GKT AFG+ +   +   N +F   
Sbjct: 27  QALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKI---NPKFQ-- 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL + PTRELAVQV  E+  +     +      GG S+ R+ R L+ G+ +VVGTP
Sbjct: 82  -AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGSQVVVGTP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           GR+ DH+    L + ++K VVLDEADEMLD+GF DDIE IL   PK+ R++++FSAT+ P
Sbjct: 141 GRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVMLFSATMPP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNA 247
            I  LA+NY      V ++ +      I+     V    RD    +A+  I+       A
Sbjct: 201 EIKKLAQNYMSQPKSVAVSRDELTVPLIEQ----VFYETRDKIKVDALCRIIDMEDIGQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V      L    +   AL G+LSQQ+R   ++  RDG+  + +ATDVAARG
Sbjct: 257 IIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG ++ ++     R+   + R     +
Sbjct: 317 LDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIKTRI 376

Query: 368 VWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           V +  P++  + ER A+ +      +   S  G  + +V  LL ++D   +AA  L+   
Sbjct: 377 VRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALKF-- 434

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                          +            ++  G+     G     +++G  Q+   + ++
Sbjct: 435 ---------------AVEGVEERTEEEDELTFGNTGAAPGMVRLFMNIGRLQQVRPQDIV 479

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             +   SGI    IG I +    TFVE+
Sbjct: 480 RWIADESGIPGNIIGMINIYDKFTFVEI 507


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 152/514 (29%), Positives = 266/514 (51%), Gaps = 33/514 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+  A+ E G+   T +Q   +   +   DV+  AQTG+GKT +FG+ +   +   N 
Sbjct: 13  PQVL-RAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGIPVLHKVDPNNK 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAH 126
           +         + ++PTRELA+QV  E+  L     GV +    GG  ++R+ + L+ GA 
Sbjct: 72  KTQ------VIILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDINRQIKALKGGAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMF 185
           I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+  P++ R+ ++F
Sbjct: 126 IIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEYIPEEGRQTVLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K YQ DAV + +  +      I+     V   D+   +  +L Y+  K
Sbjct: 186 SATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDVKRKDKTEVLTRLLDYYNPK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC+T+  V   ++ L    +    L G++ Q +R   ++  R GR  + IATDVAA
Sbjct: 246 LSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGRVEILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      + + + R    
Sbjct: 306 RGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVYKLKDIMRYCKT 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-----HDPEKIAAG 419
            ++  P PS + + +  A++++Q     + I+ ++ K+M++++  +     +    IAA 
Sbjct: 366 KILAMPIPSSDDVAQIKAEKVMQG--IGEIIENEDLKEMIEIIEKQVNDSDYTAMDIAAA 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL+                   G+    +D    ++   +    +G     +++G K + 
Sbjct: 424 FLK----------------QALGQVNLENDRENGEIDWDNTGAEEGMVRLFINIGKKDRV 467

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +   ++  +   SG+  + +GAI +    TFVEV
Sbjct: 468 KPGDILGAIAGESGMPGKLVGAIDMYDKYTFVEV 501


>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 571

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 155/532 (29%), Positives = 276/532 (51%), Gaps = 38/532 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+ ++GY   T +Q+ +L   L  +KD++  AQTG+GKT AFG+ L   +  + ++F  A
Sbjct: 32  AIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLERIDFKANKFVKA 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + + PTRELA+Q+  EL+ L     V +    GG S+ ++ +DL+ G  IVVGTP
Sbjct: 92  -----IIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKDLEKGVDIVVGTP 146

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++SH++ +VLDEAD MLD+GF DD+  I+  + + +R  +FSAT+   
Sbjct: 147 GRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENKRTFLFSATMPKE 206

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ + K+ + V+   +     + +     V   D+   +  I+  +     IVFC 
Sbjct: 207 IVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIIDMNPDFYGIVFCQ 266

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L +  +    L G+ SQ +R   L   R  + R+ + TDVAARGID+  
Sbjct: 267 TKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVTTDVAARGIDIDG 326

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+  +  +PE  +HR GRTGRAG+KG ++  + ++      R+ R A   ++ +  
Sbjct: 327 LTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVKRFAKAKIIKDSI 386

Query: 373 PSVEAIRERDAQRILQ---------DPLFLDSIQGDEKKM-----VDVLLAKHDPEKIAA 418
           P VE I  R  +++L          + L+  + Q   ++M     V++LL     +KI  
Sbjct: 387 PQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVEMLLHTLIKDKID- 445

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
               + R G     ++ P +   GR++          G  +++   GS    +++GS + 
Sbjct: 446 ----VSRYG-----DVKPKNFSKGREQ--------NFGDSNKNVDSGSVRLFVNMGSSKG 488

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            + + L+  +   +G+   +I  ++V  + +F++VS    +++ +T+   +G
Sbjct: 489 LDKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTLNPKRG 540


>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 487

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 214/369 (57%), Gaps = 4/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY  +T +QE  +   L+ KDV+ +AQTG+GKT AF L L   ++  
Sbjct: 9   SLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLLQRMMKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELAVQV  +++ LYAK T +  AV  GG+ +  +  +L+
Sbjct: 69  ENASTSPARHPVRALVLLPTRELAVQVAEQVK-LYAKYTNLNSAVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRIT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA ++ +D V + +A  N   + ++     V   D+  A+  IL+  
Sbjct: 188 LLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRALHQILKAR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A VF +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TD
Sbjct: 248 DLKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +  + QR    + + 
Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRLVTDIEKL 367

Query: 363 ANVSVVWEP 371
               +  EP
Sbjct: 368 IKTKIEIEP 376


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 211/375 (56%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +++    +      
Sbjct: 20  ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    YAK   G+ V    GG S+H++   L+ G  I+VGT
Sbjct: 74  APQILVLAPTRELAVQVA-EAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G   + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDIIIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R     +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMD 372

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 373 VPSPETVTERRLSRL 387


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 164/534 (30%), Positives = 273/534 (51%), Gaps = 42/534 (7%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    I +A+ E GY N T +Q   +   L  KDVL  + TG+GKT AFG+  
Sbjct: 1   MTTFNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117
              ++  N +F     P AL I PTREL  QV  EL ++   K GV +    GG  + R+
Sbjct: 61  IEKVIPGN-KF-----PNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IVVGTPGR+ DH+  + L +  +  ++LDEADEML++GF++DIE IL   P
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMP 174

Query: 178 --KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              + + ++FSAT   AI  + + +QKD VRV I S  R    ++          + NA+
Sbjct: 175 ADNEHQTILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L ++     ++FC+T+  V    + L +H  +  +L G++ Q+ RS  ++  R+G +
Sbjct: 235 RVLLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTS 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ +I    QR 
Sbjct: 295 PILIATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLISGGKQRG 354

Query: 356 A-ERLFREANVSVVWEPAPSVEAIRE--RDA-----QRILQDPLFLDSIQGDEKKMVDVL 407
           A + + R    ++     P+   + E  R+A     +    + +  +SI+     M D +
Sbjct: 355 AIKDVIRYTKTNITRHALPTSAQMMEANRNAFIAKVKEACDEGITEESIEIANALMADGI 414

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 E I +  + ++        E+  +       R+  D  A               
Sbjct: 415 AL----ENIISALISMNYKN-----EVIDIEEEENVKRYASDFDAI-------------- 451

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
               SVG     +   ++  +    G++ ++IG I V+P+ + V+++AD VD++
Sbjct: 452 TLKFSVGRTHGIQPGNIVAAIIEECGMSPKAIGRIDVRPNFSLVDIAADKVDIV 505


>gi|218678929|ref|ZP_03526826.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894]
          Length = 340

 Score =  243 bits (621), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 177/265 (66%), Gaps = 8/265 (3%)

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 1   TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 60

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 61  DNAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 120

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVG-GGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R  RD++  ++    G R++F  S WFS+SVG KQ 
Sbjct: 121 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 180

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 181 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 240

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD 558
            L G  PDF R      +  K+S+D
Sbjct: 241 KLSG-TPDFSRAPSPKSYAGKSSRD 264


>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 552

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 169/518 (32%), Positives = 266/518 (51%), Gaps = 26/518 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + ++E G+ + T +Q+A +   L  +D++  AQTG+GKT AFGL L         R +P 
Sbjct: 17  QTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQ-------RITPR 69

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              + AL +APTRELA+QV   ++    + G+ V    GG +  ++ R L+ G  ++VGT
Sbjct: 70  QQGVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQGVEVIVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L+++ ++ VVLDEADEML +GF +DIE ILD  P +R+ ++FSATIS 
Sbjct: 130 PGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTMLFSATISK 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L+  Y +D   V+I  +    + I+ R  LV   D+  A+  +       +A++F 
Sbjct: 190 RVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQDKVAALTRLFEMETIDSALIFT 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR         L    F   AL+G+LSQ  R   L   R+G+ +V +ATDVAARG+D+ 
Sbjct: 250 RTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  V + +L  +PE  +HR GRTGRAGR+G+++ ++    +    R+   A   +    
Sbjct: 310 DISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKDRWILRRIEDYARYKLTRAE 369

Query: 372 APSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAG 427
            P+++ I E   Q +L + L           E+++V++LL   H  E IAA  L++ R G
Sbjct: 370 LPTIQQI-ENHRQALLMEQLEVWIRRGRCRREREVVEMLLQTGHQAEDIAAAALKLAR-G 427

Query: 428 LCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSR---DNFKGSSWFSLSVGS 475
                 I P++ +            DRF         G G R   D  +      L+VG 
Sbjct: 428 EEKKRPIDPITPIKEEQFNPRERKNDRFPRRGGQAGTGPGGRRGHDRDRDMVPLRLNVGR 487

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                   ++  L   SG+    +G IR++ D T V+V
Sbjct: 488 ADGVGVNHVVASLAHYSGVAAVQLGKIRLEADHTLVDV 525


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 225/390 (57%), Gaps = 14/390 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + ++L +RG   L  +Q A+L P L  +D++  A+TG+GKT+AFG+ + + L   
Sbjct: 114 DLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDG 173

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCI-GGVSVHRERRD 120
            D   +S    P AL +APTRELA QV +E++    Y KT     VCI GGVS   ++  
Sbjct: 174 QDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYLKT-----VCIYGGVSYVTQQSA 228

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGRL D I G  L +S ++ +VLDEAD+ML +GF +D+E IL+  P KR
Sbjct: 229 LSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKR 288

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++    E +    I   A+    + +   + ++
Sbjct: 289 QSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDL 348

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V
Sbjct: 349 ITVYAKGGKTIVFTQTKRDADEVSLALTNSITSE-ALHGDISQHQRERTLNGFRQGKFTV 407

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R   
Sbjct: 408 LVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVR 467

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            L R+      +  APSVE + E  A++++
Sbjct: 468 SLERDVGCKFEFVNAPSVEDVLESSAEQVV 497


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 204/337 (60%), Gaps = 2/337 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I E +S+ GY   T +Q     P L  +D++ +AQTG+GKT AF L + + L+ + N   
Sbjct: 15  ILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPILNRLIPKANYST 74

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ + +        +  ++  GGV ++ ++++L  GA IV
Sbjct: 75  SPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQKQELMRGADIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DHI  + +N++ ++ +VLDEAD MLD+GF  D+  IL + PK R+ L++SAT
Sbjct: 135 IATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLPKSRQSLLYSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I +LA+ +  + V + +AS N   S I      V+ SD++ A+V IL      N I
Sbjct: 195 FSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNAALVYILTSRAFNNVI 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F + + +     ++L  +   V +L G+ SQ ER+ AL + +  +  + +ATDVAARG+
Sbjct: 255 IFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNILVATDVAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ D++ VI+ EL    E+ +HR GRTGRAG+KG+++
Sbjct: 315 DISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAI 351


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV  E E+  +   +      GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ + +++  ++ Q     I   ++   + ++ + +  ++  H  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +A + F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVEA 377
                  P  ++E 
Sbjct: 479 GCKFSELPRIAIEG 492


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 185/584 (31%), Positives = 295/584 (50%), Gaps = 49/584 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKLDLTQYK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHI+VGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRALKSGAHIIVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++      VLDEADEML +GF DD+ +I++ SP+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQRVLFSATMPPI 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    S+     
Sbjct: 314 INHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRTSMEEIQL 373

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGD---EK--KMVDVLLA--KHDPEKIAAGFLRIH- 424
           P  + + E    R+ Q  L L++ +     EK  ++V+ L A  + D   +AA  L+   
Sbjct: 374 PHRDKVAE---SRLTQLGLELEADKDHAALEKFAELVEKLQASLEVDATTLAAILLKRQQ 430

Query: 425 --RAGLCAPEEITPVSLV-------------SGRDRFRDDSRAFKVGGGSRDNFKGSSW- 468
             R      E+    ++               GR   RD  R F    GSRDN +   W 
Sbjct: 431 GKRPLFYTGEDPMLAAIERDKSRRRDRRESGDGRTDSRDGRREF----GSRDNVRNVDWD 486

Query: 469 -FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + L VG  Q  + + ++  L    G+ + SIGAI++    TFV++    S+D    LR+
Sbjct: 487 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKSMSSDVTGKLRK 546

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSS-GFKSKNSQDGATKRFKR 566
                  I+ K +G    DF  ++ S G + + ++DG   R  R
Sbjct: 547 L-----RIRQKEVGAVVCDFDDFRESRGRRPEGNRDGGGYRGAR 585


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score =  243 bits (620), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 263/520 (50%), Gaps = 35/520 (6%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+     I +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L   
Sbjct: 6   FENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           +  +N +         + + PTRELA+QV  E+  L     G+ V    GG  + ++ R 
Sbjct: 66  VDPKNKKLQ------GIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIE IL   P++R
Sbjct: 120 LKSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  + K +QK+A  V +  +     +I+     V   +++  +  +L 
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRPKNKEEVLTRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K +++FC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +A
Sbjct: 240 IYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + 
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAK-----HDP 413
           R     +  +  PS++ +     + IL+D   +D I    D   MV+ + +K     +  
Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMENILED---IDRIIETEDLTAMVNAIESKVNGSDYTA 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA FL+     +C           +G     D S      G +     G     +++
Sbjct: 417 MDIAAAFLK-----MC-----------TGMTMSDDGSAEDMDFGDTGAEEPGMVRLFINI 460

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G KQKA+   ++  L   +G+  + IG I +    TFVEV
Sbjct: 461 GKKQKAKPGDILGALAGETGMPGKLIGTIDMFDKYTFVEV 500


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score =  243 bits (619), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 229/432 (53%), Gaps = 17/432 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + ++E G+ + + +Q+  +   L  KD++  AQTG+GKT A+GL   + +  E+ 
Sbjct: 19  PEIL-QGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVED- 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                     L + PTRELA+QV  EL  L    G+      GG S  ++   +  GA +
Sbjct: 77  ------GMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAKGAQV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            V TPGRL D ++GK L       V+LDEADEMLD+GF DDIE I +  P KR+ L+FSA
Sbjct: 131 AVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LA  YQ     V IA+  +   +I+    ++  ++R+ A+V IL Y     A
Sbjct: 191 TMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFKA 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+         L+   + V AL G+L+Q++R   L+ + DGR ++ +ATDVAARG
Sbjct: 251 IIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LVI+  L  + E+  HR GRTGRAG+ G +V ++     R   RL   +  ++
Sbjct: 311 LDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTSGTNL 370

Query: 368 VWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
                P+ + +   RE D  + + D      I  D + +++ LL   D   IA   L   
Sbjct: 371 TIAALPTKKEVHLSREEDFLKKVVD----TEIHADAEAVLEKLLKLEDKRSIALKLLSKM 426

Query: 423 IHRAGLCAPEEI 434
           +    +  PE+I
Sbjct: 427 LDNTKISGPEKI 438


>gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516600|gb|EAS19260.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 644

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 168/525 (32%), Positives = 284/525 (54%), Gaps = 17/525 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           +K FE   + Q +   L++ G+ N T +Q+  +   L+ + D +  AQTG+GKT AFGL 
Sbjct: 12  LKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLP 71

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHR 116
           L   L+  N R        AL +APTRELA Q+  ++E +    G +  V + GG ++  
Sbjct: 72  LLD-LIDVNSR-----EVQALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMN 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RD++ GA I+V TPGRL D ++ + + +  LK +VLDEADEML++GF++DI+FIL  S
Sbjct: 126 QIRDIRRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKS 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R + +FSAT++  I  +   Y      V I  +N  + +I+++++ +  SD+  A+ 
Sbjct: 186 DTGRNIWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALR 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L Y      +VFC T+         L  + +   AL G++SQ +R  A++  R+   +
Sbjct: 246 RFLDYDEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLK 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ D+  VIH  L  +PE   HRSGRT RAG+KG+S+ +I +   R+ 
Sbjct: 306 LLIATDVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKL 365

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHDP 413
           + +  +  +       P++EAI ++   R  ++ +  +  +  ++++V+ +    A    
Sbjct: 366 KFIASKLGIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDEQLVNAVQESFADVTK 425

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGG-GSRDNFKGSSWFSL 471
           E+I A  L      +     I+ ++  S GRD  RDDS   + G   SR   +G   + +
Sbjct: 426 EEIIAKLLTKEYNSIYKRNSISDLNDRSKGRD--RDDSPRRERGKRTSRGTEEGMKTYFI 483

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           ++G K       L+  +C ++GI+   IG I +    ++++V+ D
Sbjct: 484 NLGLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAED 528


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 212/375 (56%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +++    +      
Sbjct: 20  ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +P  L +APTRELAVQV  E    YAK   G+ V    GG S+H++   L+ G  I+VGT
Sbjct: 74  SPQILVLAPTRELAVQVA-EAFGSYAKFMKGLHVLPIYGGQSMHQQLNALRRGPQIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R     +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMD 372

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 373 IPSPETVTERRLSRL 387


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 219/388 (56%), Gaps = 11/388 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY N T +Q A ++P +  KD++  AQTG+GKT AF L L + +  +       +
Sbjct: 20  ALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKVDMK------IN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    YAK   G  V    GG S+H++   L+ G  ++VGT
Sbjct: 74  APQILVLAPTRELAVQVA-EAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKRGPQVIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE++L+  PK  ++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  +  + V ++IA+       ID R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRIAPMK 372

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399
            PS E++ ER   R+ +  L  +++ GD
Sbjct: 373 VPSPESVAERRLSRLGE--LIQETLNGD 398


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 133/374 (35%), Positives = 214/374 (57%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV  E E+  +   +      GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFXESAPNLDTLCVYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ + +++  ++ Q     I   ++   + ++ + +  ++  H  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +A + F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVEA 377
                  P  ++E 
Sbjct: 479 GCKFSELPRIAIEG 492


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 229/432 (53%), Gaps = 17/432 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + ++E G+ + + +Q+  +   L  KD++  AQTG+GKT A+GL   + +  E+ 
Sbjct: 24  PEIL-QGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLNRIKVED- 81

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                     L + PTRELA+QV  EL  L    G+      GG S  ++   +  GA +
Sbjct: 82  ------GMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQVAKGAQV 135

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            V TPGRL D ++GK L       V+LDEADEMLD+GF DDIE I +  P KR+ L+FSA
Sbjct: 136 AVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKRQTLLFSA 195

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LA  YQ     V IA+  +   +I+    ++  ++R+ A+V IL Y     A
Sbjct: 196 TMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILDYENPFKA 255

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+         L+   + V AL G+L+Q++R   L+ + DGR ++ +ATDVAARG
Sbjct: 256 IIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVATDVAARG 315

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LVI+  L  + E+  HR GRTGRAG+ G +V ++     R   RL   +  ++
Sbjct: 316 LDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLKGTSGTNL 375

Query: 368 VWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
                P+ + +   RE D  + + D      I  D + +++ LL   D   IA   L   
Sbjct: 376 TIAALPTKKEVHLSREEDFLKKVVD----TEIHADAEAVLEKLLKLEDKRSIALKLLSKM 431

Query: 423 IHRAGLCAPEEI 434
           +    +  PE+I
Sbjct: 432 LDNTKISGPEKI 443


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score =  243 bits (619), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 210/375 (56%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L +++    +      
Sbjct: 20  ALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV       YAK   G+ V    GG S+ ++   L+ G  I+VGT
Sbjct: 74  APQILVLAPTRELAVQVAEAFAS-YAKYMKGLHVLPIYGGQSMQQQLNALRRGPQIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDIIIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATNSRIAPMD 372

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 373 VPSPETVTERRLSRL 387


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 206/346 (59%), Gaps = 4/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY ++T +Q   +   L  +DV+ +AQTG+GKT AF L L   LL  
Sbjct: 9   SLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ENSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y ++ V + +A  N   S ++ R   V   D+  AI ++LR  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G K A VF +++   +R ++ L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++
Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 181/576 (31%), Positives = 292/576 (50%), Gaps = 37/576 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+SE G+ + + +Q A +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D  S    P  L +APTRELA+QV    E       G+ +    GG     + R L+ GA
Sbjct: 69  D--SDEKYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S LK +VLDEADEML +GF DD+E ++   P++ +  +F
Sbjct: 127 QVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K +  +   V I S  R + DI      V    ++ A++  L      
Sbjct: 187 SATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR     ERL 
Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPR--ERRLLGNIERLM 364

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++    V       ++A R       +   L    ++     + D+  A  D E IAA  
Sbjct: 365 KKPIEEVELPNHERLQACRRAKFVAKITKQLEHHDLEKYRSLLEDLFTADQDQEDIAAAM 424

Query: 421 LRIHRAG---LCAPEEITP----VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           L + +     +  P+   P        + R +  D+ R + V        K    + + +
Sbjct: 425 LMLLQGKQKLILPPDAPMPKRNERRERANRSQRSDERRGYGVP-------KSMDLYRIEI 477

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528
           G     E R ++  +     IN ++IG I++  D + +E+   G+   LLR   +T  L+
Sbjct: 478 GRSDGVEVRHIVGAIANEGDINSRNIGHIKLFDDYSTIEL-PQGMPKQLLRHFEKTRVLN 536

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
           K +Q+ ++   +    G ++  F+ ++ +  A +RF
Sbjct: 537 KQMQMSFVREVQS---GERAERFEHRDGKRRANERF 569


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 169/532 (31%), Positives = 270/532 (50%), Gaps = 59/532 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +A++  G+  +T++Q   +   L  KD++  +QTG+GKT+AF +          
Sbjct: 13  VDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPAVQ------ 66

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +  PA+  P  L + PTRELA+QV  E E  L    GV +A   GG S+ ++ R  ++G
Sbjct: 67  -KVDPAAKRPQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQIRAFKSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+R   L    ++ VVLDEADEMLD+GFR+DIE ILD      +  +
Sbjct: 126 AQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVDHPVQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   IT +A+ YQ+D   V IA +N   + I+ R   +    +  A+  +L  +  
Sbjct: 186 FSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVDGQKFEALTRLLAVYRP 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++FC+T+  V   T  L +  +    + G++ Q+ R   L+   +GR  + +ATDVA
Sbjct: 246 RRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+++V + ++  N E  +HR GRTGRAG+ G+S+ +  +  Q R +++ R   
Sbjct: 306 ARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLKKITRYTR 365

Query: 365 VSVVWEPAP---SVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAK-HDPEKIA 417
             +  EPA     ++A ++R  +    D   P +L +        VD L A+  +   +A
Sbjct: 366 KPI--EPAAIALRLDAFKDRFGEWTDDDSDMPRYLQA--------VDELAAQGFEMRYVA 415

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKG----------- 465
           A  LR H                     FR D R   +   G +   KG           
Sbjct: 416 AVLLRAHLP-------------------FRHDDRDINLMLTGEKGTGKGIRRKRRTHFDP 456

Query: 466 --SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
             ++   + VG K  A+ R ++  +C  SGI   ++G I +    T+  V +
Sbjct: 457 AETTKIFIGVGKKDGAKKRDVLGAICGESGIASDAVGEIAMYGHFTYAAVDS 508


>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 580

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 216/369 (58%), Gaps = 10/369 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEN 66
           P+V+ EA+   GY   T +QE  +   +  KD+   AQTG+GKT AFG+ A+    ++ N
Sbjct: 10  PEVV-EAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIEHVDISIN 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              S       L + PTRELA+QV  EL+ L   K G+ V    GG S+ R+ RDL+ GA
Sbjct: 69  QTQS-------LILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+  + LN SHL  ++LDEADEML++GFR+DIE IL   P++R+ ++F
Sbjct: 122 HIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++P I  LAK +Q +   + I  +    S ++    LV  S +   +  I+  +  +
Sbjct: 182 SATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNLQ 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC+T+  V   T  L  +    ++L G+ +Q++R+  +   R G A + +ATDVAA
Sbjct: 242 LMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  ++ VI+ ++  + EN +HR GRTGRAG+ G S  ++  + + +   + R    
Sbjct: 302 RGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTKA 361

Query: 366 SVVWEPAPS 374
           ++     P+
Sbjct: 362 TIEKAETPT 370


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/346 (39%), Positives = 206/346 (59%), Gaps = 4/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY ++T +Q   +   L  +DV+ +AQTG+GKT AF L L   LL  
Sbjct: 9   SLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQRLLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ENSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y ++ V + +A  N   S ++ R   V   D+  AI ++LR  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHHVLRTR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G K A VF +++   +R ++ L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++
Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 260/524 (49%), Gaps = 41/524 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY  +T +Q   +   L  KD++  AQTG+GKT AF + +         +  P  
Sbjct: 17  AIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQ-------KIDPKV 69

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             L A+ + PTRELA+QV  E+         + A+ I GG  + R+ R L+ G  IV+GT
Sbjct: 70  KGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKAGVQIVIGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K +    +  + LDEADEML++GFR+DIE IL   P+ R+ L+FSAT+  
Sbjct: 130 PGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTLLFSATMPQ 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ YQKDA  V +  +      I+     V   ++ + +  +L  +  K  +VFC
Sbjct: 190 PIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPKNKVDVLSRLLDMYSPKRCLVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L+   F    L G+L QQ+R   +   R G+A + +ATDVAARGID+ 
Sbjct: 250 NTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVATDVAARGIDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+E V + ++  + E  +HR GRTGRAGR G +  ++      +   + R     +   P
Sbjct: 310 DVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQRYCKTKIKVMP 369

Query: 372 APSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAK-----HDPEKIAAGFLRIH 424
            PSV  +    A++IL D +   +D+   D  KM+ ++ AK     +    +AA FL++ 
Sbjct: 370 IPSVNDVTAVKAEKIL-DRINELMDA--EDLTKMISIIEAKINESDYTALDVAAAFLKMA 426

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                 PEE                        G     +G     +++G KQ      +
Sbjct: 427 MGSDSQPEEQAVPDF------------------GDTGAEQGMVRLFINLGKKQNIRPGDI 468

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           +  +   +G+  + IG+I +    TFVEV    +AD + +++ +
Sbjct: 469 LGAIAGETGMPGKLIGSIDMYDKYTFVEVPREYAADVIQVMKES 512


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 234/426 (54%), Gaps = 13/426 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLDNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I H+K +VLDEADEML++GF +DIE I+ ++P +
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV FV P  M   R  
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415
           E L ++   ++  EPA   +A   +      +    +D+    E +  VD L A++  E+
Sbjct: 355 EDLTKKRMTAL--EPASLQDARVGKIKNAAGEVSKIVDAANAKEIQSEVDKLTAQYSSEQ 412

Query: 416 IAAGFL 421
           +AA  L
Sbjct: 413 LAAALL 418


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 140/369 (37%), Positives = 215/369 (58%), Gaps = 4/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  EN   
Sbjct: 5   LARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASA 64

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHI 127
           SPA  P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+ G  +
Sbjct: 65  SPARHPVRALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTIELKKGVEV 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+FSA
Sbjct: 124 LVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T SP I  LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L+    + A
Sbjct: 184 TFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            +F +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG
Sbjct: 244 FIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + +     +
Sbjct: 304 LDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKI 363

Query: 368 VWEPAPSVE 376
             EPAP ++
Sbjct: 364 EVEPAPMLD 372


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 264/531 (49%), Gaps = 40/531 (7%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI   I  A+ + GY   + +QE  +   L   D++  +QTGSGKT AF + + 
Sbjct: 1   MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             + A            AL + PTREL +QV +E+E LY  K  + +    GG  + R+ 
Sbjct: 61  ENIEAN-------GITQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGRL D +R K L +  LK VVLDEADEM D+GFRDD++FILD +  
Sbjct: 114 KSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNP 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+   FSAT+ P I   +K YQ +   V I S+      ID   + +  S ++ A++ +
Sbjct: 174 NRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H A  AIVFC+T+  V R  + L +  + V  L G+L Q  R   ++  R+   ++ 
Sbjct: 234 LEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+ D+++V + +L    E  +HR GRT RAG+ G+S  +I      R  +
Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAK-HDPE 414
           +      ++   P P++  +  +   R+++D    L  +     EK ++  L+ K +DP 
Sbjct: 354 IENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYDPF 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR-----------FRDDSRAFKVGGGSRDNF 463
            I    L+         E++  + L S +             +  +     +  G  DNF
Sbjct: 414 MICQVLLKDKLDINNNHEKLEGIDLKSEKKSKSKSNNKTKKKYDKEMTTLFMNRGKIDNF 473

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                      +K K     ++  L R + + +  IG IR+Q   +F+++ 
Sbjct: 474 -----------TKDK-----IIKALARMAKVPKDKIGQIRIQKTYSFIDIE 508


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 141/374 (37%), Positives = 218/374 (58%), Gaps = 10/374 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G++ +T +QEA L   L  KDV   A+TGSGKT AFGL L   + A+N  F+  S 
Sbjct: 29  LNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAKN--FNTQS- 85

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  Y     ++ +C GGV    +R  L + AHI+V TP
Sbjct: 86  ---LVLCPTRELADQVANELRRLARYIPNLKILTLC-GGVPFSVQRDSLVHAAHILVATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + + + HL+ +VLDEAD MLD+GF DDI+ ++  +P+ R+ L+FSAT   +
Sbjct: 142 GRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFTPEDRQTLLFSATWPDS 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  QK+ + + I S N +  D++ +   VA  D+ + +  +L      + +VFC+
Sbjct: 202 IAAISQRIQKNPLTIEINSVN-ELPDVEQQFYEVARHDKIDLLQKLLSREQPASCVVFCN 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +    V+ L G++ Q++R   L    +G +RV +ATDVA+RG+D+  
Sbjct: 261 TKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVASRGLDIKA 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+VI+ ELS +PE  +HR GRT RAG+ G+++ +      +RA  L    N+ + W P 
Sbjct: 321 LEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANVLEEMLNIKLNWLPV 380

Query: 373 PSVEAIRERDAQRI 386
           P+   I   +A+ +
Sbjct: 381 PTGLRITPLEAEMV 394


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 173/574 (30%), Positives = 284/574 (49%), Gaps = 37/574 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP V+ +AL + GY   T +Q   + P L  +D++  AQTG+GKT AF L + S +   N
Sbjct: 14  IPPVL-KALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPILSQIDISN 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
                 S P AL +APTRELA+QV    +  YA    G  V    GG S H + + L+  
Sbjct: 73  ------SDPQALVLAPTRELALQVAEAFQS-YASHLKGFHVLPIYGGQSYHVQLKQLRRA 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ DHI+   L + +LK +VLDEADEML +GF +D+E+++  +P+ R++ +
Sbjct: 126 AHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQSRQVAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +A+ Y      + + ++++    I  R   V+   + +A+  IL     
Sbjct: 186 FSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYHKLDALTRILEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+ +    ++ L    +    LSG++ Q +R   ++ +R G+  + +ATDVA
Sbjct: 246 DGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR+G ++  +    +R    + R   
Sbjct: 306 ARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSSIERSTR 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             +     PS E + ++  +R  Q     +++  ++      +L +++ E        I 
Sbjct: 366 QRIERMEMPSTEVVNDQRIERFKQK--ITNALAQEDSAFFTQILEQYEQEHDVPA---IE 420

Query: 425 RAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            AG  A   +   P+ L       R D      G G+  +  G   F + VG   + +  
Sbjct: 421 IAGALAKLLQGDEPLLLEEKTKPKRRDG-----GSGAATHSVGMERFRVEVGKNHRVKPG 475

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGG 538
            ++  +   +G+  + IG I V  D + V+    +  +  +LLR    LD  + +  LG 
Sbjct: 476 HIVGAIANETGLANKYIGRISVYDDYSTVDLPVGIPKETFELLRGVKVLDHPMNITSLGK 535

Query: 539 E---------KPDFRGYKSSG--FKSKNSQDGAT 561
                     KP  R    SG  FK K  +D AT
Sbjct: 536 TRDEGNWREGKPKRRRNTRSGPPFKKKRRKDKAT 569


>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 488

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 204/343 (59%), Gaps = 2/343 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  A+ + GY+N T +Q  ++ P L  KDV+ SAQTG+GKT  F L L   L A  +   
Sbjct: 16  ILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLHHLQAHASSST 75

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL +APTRELA+Q+   +        +   V  GGV++  +  +L+NG  I+
Sbjct: 76  SPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQITELRNGVEIL 135

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  K +N S  + +VLDEAD MLD+GF  DI+ ++   P +R+ LMFSAT
Sbjct: 136 VATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPSQRQSLMFSAT 195

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA    K  VR+ +A++N  +  I +    +    +   ++++++    K A+
Sbjct: 196 FSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHLVKQQDLKQAL 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   S+  ++L+ H    +A+ G+ +QQ+R+ AL   + G  ++ +ATDVAARGI
Sbjct: 256 VFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQILVATDVAARGI 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  L  V++ EL  NPE+ +HR GRTGRAG KG ++ ++ ++
Sbjct: 316 DIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEH 358


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 287/579 (49%), Gaps = 30/579 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473
            +   +  L  P +  P+         R D R        R   KG         + + V
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYGNPQPMDLYRIEV 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLRRTVK---LD 528
           G     E R ++  +     IN + IG I++  D T VE+   G+  +LL++  K   L+
Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFAKTRVLN 542

Query: 529 KGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
           K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 543 KQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 138/377 (36%), Positives = 215/377 (57%), Gaps = 7/377 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL + G+   T +QE  +      KD++  +QTG+GKT AFG+ +   +L  
Sbjct: 8   NISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPILDNILQN 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+         AL I PTRELAVQV  E + L A T +      GG  + ++ + L+   
Sbjct: 68  NNH-----QIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQIKGLKKKV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K + + H++ VVLDEADEMLD+GF +DIE IL  + ++R+ ++F
Sbjct: 123 QIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSEERQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L+K Y K+   + + ++      I+   + V  +D+   +  IL+   +K
Sbjct: 183 SATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADKSEVLSRILQLESSK 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC+T+  V      +    + V AL G+L QQ+R   L   R+G+  + IATDVAA
Sbjct: 243 KAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISMLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+ D++LVI+ +L    E  +HR GRTGRAG  G S  F   ++++ R  R+ + A 
Sbjct: 303 RGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIE-RLRRIEKYAK 361

Query: 365 VSVVWEPAPSVEAIRER 381
             +  E  P  + ++E+
Sbjct: 362 CKIKEESIPRYDKVKEK 378


>gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
 gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
          Length = 640

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 230/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+   I ++   +++ D   L+ ++ +E+++ + +
Sbjct: 353 KMREIERIIGKKFIPGEMPTAAGICQKQLLKVIDD---LEKVKVNEEEISEFM 402


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 200/335 (59%), Gaps = 4/335 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++E GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  EN   SPA
Sbjct: 17  AVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+ G  ++V 
Sbjct: 77  RHPVRALVLLPTRELADQVAQQI-ALYAKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVA 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT S
Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA +Y +D + + +A  N   S ++ R   V   D+  AI ++L   G K A +F
Sbjct: 196 PEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG+D+
Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGLDI 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  V + ++  N E+ +HR GRTGRAG  G++V
Sbjct: 316 KDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAV 350


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 174/532 (32%), Positives = 282/532 (53%), Gaps = 47/532 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  I Q I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +
Sbjct: 3   IKRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHR 116
              +   NDR     +  A+ + PTRELA+QV +E+  L  Y + G+      GG  + R
Sbjct: 63  LEKI-DPNDR-----SLQAIVLCPTRELAIQVSQEIRKLAKYMQ-GIKTLPIYGGQPIDR 115

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G  +++GTPGR  DHI+ K +   ++K VVLDEADEMLD+GFR+DIE IL++ 
Sbjct: 116 QIKALKGGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENV 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKD-----AVRVNIASENRQHSDIDYRAVLVALSDR 231
           P++R+   FSAT+  AI  L K YQ +      VR  +  EN +   I+ RA     S++
Sbjct: 176 PEERQTTFFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRA-----SNK 230

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  ++  +  K ++VFC+T+         L    +   AL G+L Q +R   +   R
Sbjct: 231 IEVLSRLIDVYNPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFR 290

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +G   + +ATDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+G+S  FV  +
Sbjct: 291 NGTIDILVATDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGR 350

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRER-------DAQRILQDPLFLDSIQGDEK-- 401
           +M R+ + + R     +   P P+V  + E+       + +R+  +      IQ  E   
Sbjct: 351 DM-RKMKDIERYTKSKLEKHPIPTVGDVEEKKVGAFFEEVKRVANEGKLSKQIQWLENFC 409

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           +  DV  +  D   IAA  L++    +   E+   +     ++R +++S   K       
Sbjct: 410 ENEDVDYSMVD---IAAALLKL---AMGEEEKEEIIEEKPKKNRRKEESSGAK------- 456

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             +G     ++VG KQ+ +A+ ++  +   +GI  ++IG I +    TFVEV
Sbjct: 457 --EGMVRLFINVGKKQRVQAKDILGAIAGEAGIPGKTIGTIDIYDKFTFVEV 506


>gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
 gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
          Length = 637

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 173/549 (31%), Positives = 271/549 (49%), Gaps = 29/549 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVI-PYLLGNRNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +            P AL + PTREL +Q+  +L ++    T + +    GG S+ 
Sbjct: 60  PLIQKIDV------TKRIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K   +  ++ VV+DEADEML++GF D I  IL+ 
Sbjct: 114 SQIRSLKQGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQ 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  LMFSAT+SP I  +AK Y  +A  + I ++N    ++ + A +V   D+  A+
Sbjct: 174 VPEDRNTLMFSATMSPEIARIAKTYLHNAKEITIGTKNEGSKNVHHIAYIVHAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRVVDYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407
              + R  N        PS + I E+   +++ D   ++ ++ +E ++   L        
Sbjct: 354 MREIERIINKKFTISTLPSGKEICEQQLIKVIDD---IEKVKVNEDEIEAFLPGIYRKLE 410

Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            L+K D  K  ++  F R       APE   P +     +      R       +R   K
Sbjct: 411 WLSKEDLIKRVVSMEFNRFLEYYKNAPEIEQPKANEKSNEAKERKDRGSDREKVARKAEK 470

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +   L++G      A  ++ ++ R+       IG I +  + +F EV      ++ + 
Sbjct: 471 GYTRLFLNLGKTDGFYANQIIELINRNLKKEHIQIGRIDLMQNFSFFEVVESQASMVMKA 530

Query: 525 ---VKLDKG 530
              V L+KG
Sbjct: 531 LNKVTLNKG 539


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 209/375 (55%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L +++    +      
Sbjct: 20  ALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLLNSIDPNTN------ 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV       YAK   G+ V    GG S+ ++   L+ G  I+VGT
Sbjct: 74  APQILVLAPTRELAVQVAEAFAS-YAKYMKGLHVLPIYGGQSMQQQLNALRRGPQIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPKTRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDIIIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 313 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATNSRIAPMD 372

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 373 VPSPETVTERRLSRL 387


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 174/527 (33%), Positives = 276/527 (52%), Gaps = 43/527 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+++ GY   +++Q A +   L   DV+  AQTG+GKT AF + + S       
Sbjct: 22  PEVL-RAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPILS------- 73

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  P S A  AL +APTRELA+QV        A   V V    GG S   +   L+ GA 
Sbjct: 74  KIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMAGLKRGAQ 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +++ +FS
Sbjct: 134 VVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEYKQVALFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  + K Y  D V V + S+ +   +I  R + V+   + +A+  +L       
Sbjct: 194 ATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLLETEQGDG 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +ATDVAAR
Sbjct: 254 MIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREA 363
           G+D+  +  V++ ++  +PE+ +HR GRTGRAGR G ++ FV P+  ++    ER+ R+ 
Sbjct: 314 GLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSIERVTRQK 373

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---HDPEK----- 415
            V +     PSVE +   +AQR+ +   F DSI G+      + L +    D E+     
Sbjct: 374 LVEIQL---PSVEDV---NAQRVEK---FRDSI-GEALNAPGIDLFRRLIEDYERDNNVP 423

Query: 416 ---IAAGFLRIHRAGLCAPEE--ITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWF 469
              IAA      R G    EE  +T       R+R  RD+S   K    +R +    + +
Sbjct: 424 LADIAAALAVQSRNG----EEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDL---ATY 476

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            ++VG + K     ++  +    G+NR   G I ++P+ + VE+ AD
Sbjct: 477 RIAVGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPAD 523


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 265/518 (51%), Gaps = 26/518 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +  A+++ GY   T +Q A +   +   DV+  +QTG+GKT AF + + 
Sbjct: 1   MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
             +L   DR      P AL ++PTRELA+QV  E+ ++   K G+      GG  + ++ 
Sbjct: 61  E-MLEVTDR----KRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ GA IVVGTPGR+ DHIR + L     + +VLDEADEML++GFR+DIE ++++ P+
Sbjct: 116 LELKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQ 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I  +   YQ + V +           I+    +     +   ++ +
Sbjct: 176 QRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A++FC+T+  V   T  L    +   AL G++ Q+ R+  +   + G+  + 
Sbjct: 236 ISMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +++V + +L    E  +HR GRTGRAG++G++V +I    +     
Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRD 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMV-DVLLAKHDPEKI 416
           L R     +  +P PS+E +R+          + LD ++ D E +M  DV      PE +
Sbjct: 356 LERTTRSKLTQKPLPSLEEVRK----------IRLDFLREDLEHRMTRDV------PEPL 399

Query: 417 AAGFLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           AA    +   G    E    ++  ++G + F + +             KG S   L +GS
Sbjct: 400 AAIIDTMKDDGYSYREMALALAYQIAGHEMFDESAWNASARPALTVTEKGMSELILDIGS 459

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            Q   A  ++  +  ++G+  + IG IR+    T V++
Sbjct: 460 DQDVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQI 497


>gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 618

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/410 (36%), Positives = 232/410 (56%), Gaps = 19/410 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55
           MK FE +   P+ I +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFG
Sbjct: 1   MKTFEELGVAPE-IRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS 113
           L L   +   N        P AL + PTREL +Q+  +L   Y+K  T + +    GG S
Sbjct: 59  LPLIQKIDVGN------RVPQALILCPTRELCLQIAGDLND-YSKYITDLKIIPVYGGSS 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + + L+ G HI+V TPGRL D I  K   +  ++ VV+DEADEML++GF D I  IL
Sbjct: 112 IESQIKSLKKGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAIL 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P+ R  LMFSAT+SP I+ +AK Y +DA  + I ++N    ++ + A +V   D+  
Sbjct: 172 EKVPEDRNTLMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHVAYIVHAKDKYL 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+  ++ ++     I+FC TR         L +  +   +L GELSQ +R   +Q  R  
Sbjct: 232 ALKRVVDFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQR 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ ++    +
Sbjct: 292 HLQLLVATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREK 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            + +++ R  N     E  P+ +AI E+   +++ D   ++ ++ DE+++
Sbjct: 352 GKMKQIERILNKKFSVETLPTGQAICEQQLIKLVDD---IEKVKVDEEEI 398


>gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 621

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 205/354 (57%), Gaps = 14/354 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A
Sbjct: 173 DVPKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 280/557 (50%), Gaps = 33/557 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRD---------DSRAFKVGGGSRDNFKGSSWFS 470
            +   +  L  P +  P+         R          + R  + G G   N +    + 
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYG---NPRPMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTV 525
           + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T 
Sbjct: 481 IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPD 542
            L+K +Q+ +LG  K D
Sbjct: 540 VLNKQMQMSFLGAVKSD 556


>gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 657

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKNFEELGLSPE-IRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K  TG+ V    GG S+
Sbjct: 60  PLIQKINVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYITGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+ + I E+   +++ D   L+ ++ +E+ M D +
Sbjct: 353 KMREIERIISKKFIVGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDMADFM 402


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 226/398 (56%), Gaps = 16/398 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q +   L   GY N+T +Q   L   L+ +DV+  A+TGSGKT AFG+ L S L A+N
Sbjct: 15  IKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTAAFGIGLLSKLNAKN 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +        AL + PTRELA QVG+E+  L  + +   ++++C GG  +  +R  L +G
Sbjct: 75  YQVQ------ALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLC-GGKPIAPQRDSLAHG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+R   LN+ +   +VLDEAD MLD+GF DD+  I+   PKKR+ L+
Sbjct: 128 AHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIISYLPKKRQTLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           FSAT   +I  ++   QK  V + + S +  +S+I+ R   V     R  A++ +L ++ 
Sbjct: 188 FSATFPDSIVQMSHAIQKQPVNIQVESLH-SYSEIEQRFYQVKQPQHRKEAVMTLLAHYQ 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++ ++FC+T+         L ++ +  +A+ G+L Q+ER   L    +    + +ATDV
Sbjct: 247 PESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCSILVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ DL++VI+ EL  + +  +HR GRTGRAG+KG+++ +   + Q + E +    
Sbjct: 307 AARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQHKIEAIAEIQ 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           N     +   S+E     D   +   P+    I G +K
Sbjct: 367 NQPCRCDALESLE-----DKGTLRPPPMITICIHGGKK 399


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/335 (41%), Positives = 199/335 (59%), Gaps = 4/335 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++E GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  EN   SPA
Sbjct: 17  AVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+ G  ++V 
Sbjct: 77  RHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVA 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT S
Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA +Y +D + + +A  N   S ++ R   V   D+  AI ++L   G K A +F
Sbjct: 196 PEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGLKQAFIF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TDVAARG+D+
Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVCTDVAARGLDI 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  V + ++  N E+ +HR GRTGRAG  G++V
Sbjct: 316 KDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAV 350


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 180/588 (30%), Positives = 300/588 (51%), Gaps = 42/588 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+SE G+   + +Q+A +   L   DVL  AQTGSGKT AF L L + +   N
Sbjct: 13  LPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAKI-DTN 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +++     P  L +APTRELA+QV    E ++    GV +    GG     + R L+ GA
Sbjct: 72  EKY-----PQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S+L+++VLDEADEML +GF DD+E ++   P++ +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K +  +   V I S  R   DI      V    ++ A++  L      
Sbjct: 187 SATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +    T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVAA
Sbjct: 247 AAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR     ERL 
Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPK--ERRLLGNIERLM 364

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++A   V      +++  R ++    +   L    ++     + D+  A  D E IAA  
Sbjct: 365 KKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAM 424

Query: 421 LRI--HRAGLCAPEEITPV---------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L +   +  L  PE+  PV             G  R +++ R+ + G G+    +    +
Sbjct: 425 LMLLQGKQKLILPED--PVFEKHSRRNDRRERGERRGKENPRSERHGYGTP---QPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525
            + VG     E R ++  +     I  + IG I++    + +E+      + + +  +T 
Sbjct: 480 RIEVGRCDGVEVRHVVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR-FKGASK 572
            L+K +++ ++     +      SG K K        R++R F+G  K
Sbjct: 540 VLNKQMRMSFVSAVNSEEEFEAGSGGKRKG-------RYEREFRGGRK 580


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 214/373 (57%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV  E E+  +   +      GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQV--EKEFCESAPNLDTLCVYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y K+ + +++  ++ Q     I   ++   + ++ + +  ++  H  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +A + F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKRDADRLAYAMARN-FRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVE 376
                  P  ++E
Sbjct: 479 GCKFSELPRIAIE 491


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 167/511 (32%), Positives = 266/511 (52%), Gaps = 36/511 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q   +   L   D+L  +QTG+GKT AFGL + S L    D+  
Sbjct: 28  IVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPMLS-LTQPGDKKR 86

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             S    L + PTREL +QV  E+  +   K GV +A   GG  + ++ RDL+ GA IVV
Sbjct: 87  TNS----LILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQIRDLKRGADIVV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DHIR K + +   + +VLDEADEML++GF +DIE I    P++R+   FSAT+
Sbjct: 143 ATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPEERQFAFFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  L++ +  +  R+ ++  N   S I      V   D+ +  + +L+ H     ++
Sbjct: 203 PKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQLLQLHKTSGTMI 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T  L +  F  + L G++ Q+ RS  +   + G   V IATDVAARGID
Sbjct: 263 FCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +++VI+ ++    E  +HR GRTGRAG++G+++ ++ +  +   +++ R +N ++V 
Sbjct: 323 VDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQIERLSNSTIVE 382

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL- 428
            P P+ E + +          L +D +  + +K  D     H+  K+      I   GL 
Sbjct: 383 TPLPTKEQLND----------LMVDQLAREIRKWND-----HEQGKL----FNIAYEGLR 423

Query: 429 ---CAPEEITPVSLVSGRDRFRDDS--RAFKVGGGSRDNFKGS-SWFSLSVGSKQKAEAR 482
                 EEI    +V+  ++   +S   A KV        KG  S   LSVG +    A 
Sbjct: 424 NENFTQEEI----IVAFINKMISESNLEAIKVSKQKDVKNKGEISRIGLSVGDRDGIAAA 479

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            L+  +  +SGI  + IG I++  + + VEV
Sbjct: 480 HLVSAIATASGIRGKDIGRIKIDDNESTVEV 510


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/347 (40%), Positives = 205/347 (59%), Gaps = 10/347 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L S L A + R      
Sbjct: 30  LASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLLSHLDATSSRVQ---- 85

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QVG+EL  L  +     V+ +C GGV    +   L++GAHIVVGTP
Sbjct: 86  --ALVLCPTRELADQVGKELRRLARFTDNIKVLTLC-GGVPFGPQLGSLEHGAHIVVGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   L+++ L+ +VLDEAD MLD+GF+D+I  ++D++PKK++ L+FSAT   A
Sbjct: 143 GRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPKKKQTLLFSATYPEA 202

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q + V V++  E    S I+     V   +R  A+  IL ++  ++ +VFC+
Sbjct: 203 IAAMSATIQHEPVAVSV-DEVHDESAIEQVLYEVDKEERTEAVARILGHYRPESTLVFCN 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +  F  +A+ G+L Q+ER   L    +    V +ATDVAARG+D+ +
Sbjct: 262 TKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVLVATDVAARGLDIKE 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           L  VI+ ELS +PE  +HR GRTGRAG  G+ + ++     RR + +
Sbjct: 322 LAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQAI 368


>gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 636

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     IVFC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +
Sbjct: 353 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 402


>gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 613

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 289/582 (49%), Gaps = 36/582 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACEQFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRD---------DSRAFKVGGGSRDNFKGSSWFS 470
            +   +  L  P +  P+         R          + R  + G G   N +    + 
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYG---NPQPMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTV 525
           + VG     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T 
Sbjct: 481 IEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFKR 566
            L+K +Q+ +LG  K D  RG  S  F  K    G   R +R
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG--SDDFNGKRKGRGGDFRGER 579


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 140/374 (37%), Positives = 219/374 (58%), Gaps = 4/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64
           ++ + +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  
Sbjct: 9   HLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ENASASPARHPVRALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y +D V + +A  N   S ++ R   V+  D+  AI ++L+  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVSDDDKRYAIRSVLKER 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + A +F +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TD
Sbjct: 248 DIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + + 
Sbjct: 308 VAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKL 367

Query: 363 ANVSVVWEPAPSVE 376
               +  EPAP ++
Sbjct: 368 IKKKIDVEPAPMLD 381


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 171/532 (32%), Positives = 267/532 (50%), Gaps = 29/532 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
             +      P  L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  QRK------PQLLVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQIRQLKR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P++R+  
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + + Y KD   V IAS+    S I  R   +A   +  A+  I+    
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEV 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +       L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV
Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + +  
Sbjct: 306 VARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHD----PEKIA 417
              +   P PS+  I E    R  Q     ++ Q D  E  M  V + K +    PE I 
Sbjct: 366 KQPIEAMPIPSISEINETRLSRFKQS--VAEATQDDSIESLMPIVEMIKEENEASPETIM 423

Query: 418 AGFLRIHRAG--LCAPE----EITPVSLVSGRDRFRDD-----SRAFKVGGGSRDNFKGS 466
           A  L+I +    L   E    +I        RDR   D      R  +V  G+R   +G 
Sbjct: 424 AALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPEEGM 483

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
             F + VG    A+   ++  +   + IN + IGAI +  + + V++  DG+
Sbjct: 484 QRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDL-PDGM 534


>gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
 gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
          Length = 618

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +   N        P +L + PTREL +Q+  +L ++     G+ V    GG S+ 
Sbjct: 60  PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL  
Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+
Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +
Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/524 (30%), Positives = 266/524 (50%), Gaps = 36/524 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  I   I +A+ + G+   + +QE ++   L+  DV+  AQTG+GKT AFG+ L
Sbjct: 1   MMKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + ++    S       L + PTRELA+QV  EL+ L       +    GG S+  + 
Sbjct: 61  LEKVTSDRQVQS-------LILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +VVGTPGR+ DH+  K L +  +  ++LDEADEMLD+GF +DIE IL     
Sbjct: 114 KALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNT 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+ P I  L+  Y  +  +V I+        I+     V   ++ +++  +
Sbjct: 174 NRQTMLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRV 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      
Sbjct: 234 IDSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  +PE+ +HR GRTGRAGR+G++V ++     +    
Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHD 412
           +  E  +++  +  PSVE + E+  Q+ +     +D I+ +E        +V  LL ++ 
Sbjct: 354 IEAEIKMTIPSQRIPSVEEVVEK--QQHVWKGQIIDLIESEEDDAGLYDDLVSDLLNQYP 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           P KI A  L++              +  S  D   DD   F   G      KG + F ++
Sbjct: 412 PNKIVASLLKL--------------AFYSHED-LNDDGYDFGDTGAQ----KGMTRFFIN 452

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           VG   +   + L   + +  GI  +S+G I +  + TF+EV  +
Sbjct: 453 VGRNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQE 496


>gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 650

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +   N        P +L + PTREL +Q+  +L ++     G+ V    GG S+ 
Sbjct: 60  PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL  
Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+
Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +
Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402


>gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 647

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 228/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 12  MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 70

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 71  PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 123

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF + I  IL 
Sbjct: 124 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILA 183

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   S++ +    V   D+  A
Sbjct: 184 DVPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 243

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     IVFC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 244 LKRIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 303

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 304 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 363

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +
Sbjct: 364 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 413


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 174/583 (29%), Positives = 286/583 (49%), Gaps = 53/583 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++  GY   T +Q  I+   L  +DVL  +QTG+GKT AF L + S +   + R  
Sbjct: 246 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVRSRR-- 303

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV R      A  +G  VA   GG     + + L+ G  +VV
Sbjct: 304 ----PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVV 359

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH++   L++  L  +VLDEADEML++GF +D++F+L+ SP+ R++ +FSAT+
Sbjct: 360 GTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATL 419

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A  Y  D  R+ I S+    + +  RA+ V+  D+ +A+  IL        IV
Sbjct: 420 PKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIV 479

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ S     + L++  F  +AL+G++ Q+ R   +  ++ G+  V +ATDVAARG+D
Sbjct: 480 FTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLD 539

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---VS 366
           +P +  V + +L  + E+ +HR GRTGRAGR G ++  +  N QRR  R         + 
Sbjct: 540 VPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFL-TNAQRRQLRFIENTTKQPIE 598

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEK------IAAG 419
           ++    P+V  I E   +R  Q    +  +  D+   V   ++A++  E       IAA 
Sbjct: 599 IID--IPTVADINEARVRRFKQ---RITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAA 653

Query: 420 FLRIHRAGLC--------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------- 464
              + + G             E +      GRD F  + R+   G    D  +       
Sbjct: 654 LAEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPL 713

Query: 465 -----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSA 515
                G + + L VG +   +   ++  +   +GI+ + IG I ++   T ++    + +
Sbjct: 714 TPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPS 773

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFK 552
           D    LR+T    K + L+  G    DF G      ++  GF+
Sbjct: 774 DIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFR 816


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/338 (40%), Positives = 202/338 (59%), Gaps = 4/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+++ GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  EN   SPA
Sbjct: 17  AVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHENSSASPA 76

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P+ AL + PTRELA QV +++  +YAK T +   V  GG+ +  +  +L+ G  ++V 
Sbjct: 77  RHPVRALVLLPTRELADQVAQQIA-MYAKYTKLRSTVVFGGMDMKPQTAELKKGVEVLVA 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT S
Sbjct: 136 TPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLLFSATFS 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L   G K A +F
Sbjct: 196 PEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQDDDKRRAIRHVLTERGLKQAFIF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG+D+
Sbjct: 256 VNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVDLLVCTDVAARGLDI 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            D+  V + ++  N E+ +HR GRTGRAG  G++V ++
Sbjct: 316 KDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 223/388 (57%), Gaps = 12/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +    + E+
Sbjct: 127 LPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIK-CITED 185

Query: 67  DRFS---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
           D+ S       P  L +APTRELA QV +E+         +  VC+ GGVS   +R  L 
Sbjct: 186 DKSSQRRTGRLPRVLVLAPTRELAKQVEKEIN---ESAPYLSTVCVYGGVSYITQRNALS 242

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGR+ D I    L +  ++ +VLDEAD+ML  GF +D+E IL++ P KR+ 
Sbjct: 243 RGVDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQS 302

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   +  LA+ Y  + +++++    E +    I   A+    + + + + +++ 
Sbjct: 303 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSILSDLVT 362

Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      I+F  T+      + VL   +    AL G++SQ +R   L   R G+  V +
Sbjct: 363 VYAKGGKTIIFTQTKRDADEVSMVLTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLV 421

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G +V +   + +R  + L
Sbjct: 422 ATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRRTVKSL 481

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL 387
            R+      +   P  E + E  A++++
Sbjct: 482 ERDVGCRFEFVSPPGTEEVLESSAEQVI 509


>gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
 gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
          Length = 659

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKNFEELGLSPE-IRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K  TG+ V    GG S+
Sbjct: 60  PLIQKINVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYITGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+ + I E+   +++ D   L+ ++ +E+ M D +
Sbjct: 353 KMREIERIISKKFIIGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDMADFM 402


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 269/521 (51%), Gaps = 17/521 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ E G+   + +Q+  +   L  +D++  AQTG+GKT +FG+ +   +   
Sbjct: 9   NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEKV--- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++ S  +   A+ + PTREL++QV  E+  L    GV V    GG  + R+ R L+ G 
Sbjct: 66  -NKNSKTTQ--AMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKMGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DHI+ K L   ++K  VLDEADEM D+GFR+DIE I+   P +R+   F
Sbjct: 123 QVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +   A  YQ +   + +  +      +      +  + +   +  IL     K
Sbjct: 183 SATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPK 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC+T+  V   T  L    +    L G+L Q +R   +   R+    + +ATDVAA
Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ D++LVI+ ++  + E  +HR GRT RAGR+G ++ FV P+ M   ++ + +   
Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQ-IQKYTK 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK-HDPEKIAAG 419
             +     P+++ + +R  +R ++D    + I  +E      ++++L+++ + P  IAA 
Sbjct: 362 TKIEKRDMPTLKDLIKRHEERFMED--IKEEINKNEHTKELNLINILMSEDYSPIDIAAC 419

Query: 420 FLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            L+ +     L   EE+  V +   + +  D +     GG S    K S    +++GS++
Sbjct: 420 LLKHYNENNKLNNHEELIDVDIKKNKKKGNDKTSISNKGGKSNVTEKNSGRIYINIGSRK 479

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
               R ++  LC  + I+ + IG I +    +FV +  + +
Sbjct: 480 GVSQRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNAL 520


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/426 (35%), Positives = 233/426 (54%), Gaps = 13/426 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I +++ +VLDEADEML++GF DDIE I+  +P +
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV FV P  M   R  
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415
           E L ++    +  EPA   +A   +      +    +D+ +  E +  VD L AK+  E+
Sbjct: 355 EDLTKKRMTPL--EPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYSAEQ 412

Query: 416 IAAGFL 421
           +AA  L
Sbjct: 413 LAAAVL 418


>gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R]
          Length = 647

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 228/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 12  MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 70

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 71  PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 123

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF D I  IL 
Sbjct: 124 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILA 183

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY  +A  + I  +N   S++ +    V   D+  A
Sbjct: 184 DVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 243

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 244 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 303

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 304 IQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 363

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +
Sbjct: 364 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 413


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 241/423 (56%), Gaps = 19/423 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E G+   T +Q   +   L  +D++  AQTG+GKT AFGL L + +  E D
Sbjct: 11  PKVL-QAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPLINKIPKEED 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R       +AL + PTRELA+QV  E+  L    G       GG  + R+ R L+    I
Sbjct: 70  RI------VALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQIRALKKKPQI 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGRL DHI  K + +  +K VVLDEADEMLD+GF DDI+ IL   P+ R+ ++FSA
Sbjct: 124 IIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPEDRQTMLFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LA+ + K+   V++  +      ID   + V    + +A+  +L     + A
Sbjct: 184 TMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRLLDMESPELA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V +ATDVAARG
Sbjct: 244 IVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLFREAN 364
           +D+  +  V++ +L  +PE+ +HR GRTGRAG++G++  FV P+ M   R  ER+ R   
Sbjct: 304 LDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRFIERITRH-- 361

Query: 365 VSVVWEPAPSV-EAIRERDAQRILQDPL--FLDSIQGDEKKMVDV-LLAKHDPEKIAAGF 420
             +  +P PS+ EAI  +  QRI+ + L   +++ + +E K + + LL ++D   + A  
Sbjct: 362 -KIARKPLPSIAEAIEGK--QRIIAERLIELVENGELNENKGIAIQLLEQYDSVNLLAAA 418

Query: 421 LRI 423
            ++
Sbjct: 419 FKL 421


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 174/583 (29%), Positives = 286/583 (49%), Gaps = 53/583 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++  GY   T +Q  I+   L  +DVL  +QTG+GKT AF L + S +   + R  
Sbjct: 315 VQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVRSRR-- 372

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV R      A  +G  VA   GG     + + L+ G  +VV
Sbjct: 373 ----PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRGVQVVV 428

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH++   L++  L  +VLDEADEML++GF +D++F+L+ SP+ R++ +FSAT+
Sbjct: 429 GTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVALFSATL 488

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A  Y  D  R+ I S+    + +  RA+ V+  D+ +A+  IL        IV
Sbjct: 489 PKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEETDGVIV 548

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ S     + L++  F  +AL+G++ Q+ R   +  ++ G+  V +ATDVAARG+D
Sbjct: 549 FTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVAARGLD 608

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---VS 366
           +P +  V + +L  + E+ +HR GRTGRAGR G ++  +  N QRR  R         + 
Sbjct: 609 VPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFL-TNAQRRQLRFIENTTKQPIE 667

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-DVLLAKHDPEK------IAAG 419
           ++    P+V  I E   +R  Q    +  +  D+   V   ++A++  E       IAA 
Sbjct: 668 II--DIPTVADINEARVRRFKQ---RITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAA 722

Query: 420 FLRIHRAGLC--------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------- 464
              + + G             E +      GRD F  + R+   G    D  +       
Sbjct: 723 LAEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPL 782

Query: 465 -----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSA 515
                G + + L VG +   +   ++  +   +GI+ + IG I ++   T ++    + +
Sbjct: 783 TPVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPS 842

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFK 552
           D    LR+T    K + L+  G    DF G      ++  GF+
Sbjct: 843 DIYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFR 885


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 185/589 (31%), Positives = 299/589 (50%), Gaps = 41/589 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L + +      
Sbjct: 13  LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPILA------ 66

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  PA   P  L +APTRELA+QV    E    YAK G+ V    GG     + R L+ 
Sbjct: 67  -KIDPAEKHPQLLVMAPTRELAIQVADACEHFVKYAK-GINVVTLYGGQRYDIQLRALKQ 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+R   L+++ LKA+VLDEADEML +GF DD+E ++   P+  +  
Sbjct: 125 GAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEHHQTA 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K + KD   V I +  +   DI      V    +++A++  L    
Sbjct: 185 LFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDALLRFLEVED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +ATDV
Sbjct: 245 FDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360
           AARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L 
Sbjct: 305 AARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLI 364

Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           ++ N+  V  P   V +A R +  +  +   L    ++   + + D+  A    E IAA 
Sbjct: 365 KK-NIEEVKLPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAA 423

Query: 420 FLRIHRAG---LCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            + + +     +  P+ +                 +    + R  + G G   N +    
Sbjct: 424 MMMLLQGKQKLILPPDPVVDKKARRDRGERGDRRENPRSAERRGERKGYG---NPQPMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---R 523
           + + VG     E R ++  +     IN + IG I++  D + +E+   G+  +LL+   +
Sbjct: 481 YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGK 539

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           T  L+K +++ ++G  K D RG  + G K    + G   + K FKG  K
Sbjct: 540 TRVLNKQMRMSFIGEAKGD-RGGDNFGAK----RHGGRFKEKGFKGDRK 583


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 212/376 (56%), Gaps = 11/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           +L E GY   T +Q A + P +  KD+L  AQTG+GKT AF L L S +        PA 
Sbjct: 20  SLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSNI-------DPAI 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +AP  L +APTRELAVQV  E    YAK   G+ V    GG S+H++   L+ G  ++VG
Sbjct: 73  NAPQILVLAPTRELAVQVA-EAFATYAKFVKGLHVLPIYGGQSMHQQLNALRRGPQVIVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+ 
Sbjct: 132 TPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A  Y  D + V IA+        + R V V+  ++  A+V +L     +  I+F
Sbjct: 192 EQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQHNKLEALVRVLEVEKTEGIIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR S     + L    +    L G+++QQ R  A++ ++ G   + IATDVAARG+D+
Sbjct: 252 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIATDVAARGLDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ ++  + E  +HR GRTGRAGR GM++  +     R    + R     +   
Sbjct: 312 ERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPM 371

Query: 371 PAPSVEAIRERDAQRI 386
             PS E++ ER   R+
Sbjct: 372 DVPSPESVTERRLSRL 387


>gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
          Length = 636

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 228/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQKINVKN------RIPQSLVLCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY  +A  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 IQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +
Sbjct: 353 KMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFM 402


>gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 650

 Score =  240 bits (613), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 227/412 (55%), Gaps = 15/412 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +   N        P +L + PTREL +Q+  +L ++     G+ V    GG S+ 
Sbjct: 60  PLIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL  
Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+
Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +
Sbjct: 354 MREIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFM 402


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 166/514 (32%), Positives = 259/514 (50%), Gaps = 31/514 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+ E G+   + +Q A +   L  +D++  AQTG+GKT AFG+ L   +  +
Sbjct: 10  NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKMDTK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
             R      P A+ + PTRELA+QV  E+  L AK   G  V    GG ++  + R L+ 
Sbjct: 70  VKR------PQAMILCPTRELAIQVADEIRKL-AKFMHGAKVLPIYGGQNITNQIRSLKT 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA+I+VGTPGR+ DH+R   L +  LK VVLDEADEML++GFR+DIE IL   P++R+ L
Sbjct: 123 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  + K YQKD+  + +  +     +I+     V    +   +  +L  H 
Sbjct: 183 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHS 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +IVFC+T+  V   T  L    +    + G+L Q +R   ++  R GR  + +ATDV
Sbjct: 243 PKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D++ V + +L  + E  +HR GRTGRAGR G +   +      +   + R  
Sbjct: 303 AARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYC 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHD--PEKIAAG 419
              +   P PS+  ++   A++ L++   L      +K   M+D  + + D    +IAA 
Sbjct: 363 KTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL+                +    ++  +    F   G       G     +++G K+  
Sbjct: 423 FLKKQ--------------ISENEEQEANQGEDFGDTGAE----AGMVRLFINIGKKKGV 464

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               ++  +   S I+   +GAI V    TFVEV
Sbjct: 465 RPGDILGAIAGESSISGDLVGAIDVHDQYTFVEV 498


>gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
          Length = 538

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 272/520 (52%), Gaps = 14/520 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           AL ++G+   T +QE  +   ++ E D++  AQTG+GKT AFGL +  T+   N R + A
Sbjct: 16  ALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLPIIETI-DTNSRNTQA 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+QV  E++ L     + +    GG S+ R+ ++L+ G  IVVGTP
Sbjct: 75  -----LILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQIKELKRGVQIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S   ++RML+FSAT+  +
Sbjct: 130 GRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVNTEKRMLLFSATLPDS 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+NY +D   + +  +    +  D     ++  D+   +  I+        ++FC 
Sbjct: 190 IMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISPRDKFELLSRIMDTEKEFYGLIFCK 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A V   +  L E  +    L G+++Q +R   L   +  R  V +ATDVAARGID+ +
Sbjct: 250 TKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTVLVATDVAARGIDINE 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  V++ +L  NPE+ +HR GRTGRAG++G ++  +  +  R+ + + + A   +  E  
Sbjct: 310 LTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYILKIAKTEIRREEV 369

Query: 373 PSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
           P ++ +     ++I  D   L      G+ +KM + LL + + + I A  L+        
Sbjct: 370 PDIKDVIGAKRRKIKTDIKTLMESGKFGEYEKMAEELLEEGEAKDIIAAILKHAFKDEFL 429

Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-FSLSVGSKQKAEARWLMPMLC 489
            E    +    G+   +   R+       R +F G +    +++G   K   + L+  + 
Sbjct: 430 AENYKKI----GKSSSQSSQRSDSQSNRKRQSFDGENIRLFVALGKLDKMNPKKLVEYIS 485

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           + S +  + I  ++V    +FV VS++  + +  + K +K
Sbjct: 486 KKSEVKGRDIDEVKVFEKFSFVTVSSENAETIIDSFKNEK 525


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 180/588 (30%), Positives = 299/588 (50%), Gaps = 42/588 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+SE G+   + +Q+A +   L   DVL  AQTGSGKT AF L L + +   N
Sbjct: 13  LPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLAKI-DTN 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +++     P  L +APTRELA+QV    E ++    GV +    GG     + R L+ GA
Sbjct: 72  EKY-----PQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLRALKQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S+L+++VLDEADEML +GF DD+E ++   P++ +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K +  +   V I S  R   DI      V    ++ A++  L      
Sbjct: 187 SATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +    T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVAA
Sbjct: 247 AAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR----AERLF 360
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR     ERL 
Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPK--ERRLLGNIERLM 364

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++A   V      +++  R ++    +   L    ++     + D+  A  D E IAA  
Sbjct: 365 KKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDIAAAM 424

Query: 421 LRI--HRAGLCAPEEITPV---------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L +   +  L  PE+  PV             G  R +++ R+ + G G     +    +
Sbjct: 425 LMLLQGKQKLILPED--PVFEKHSRRNDRRERGERRGKENPRSERHGYGIP---QPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525
            + VG     E R ++  +     I  + IG I++    + +E+      + + +  +T 
Sbjct: 480 RIEVGRCDGVEVRHIVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR-FKGASK 572
            L+K +++ ++     +      SG K K        R++R F+G  K
Sbjct: 540 VLNKQMRMSFVSAVNSEEEFEAGSGGKRKG-------RYEREFRGGRK 580


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 212/376 (56%), Gaps = 11/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +++        P +
Sbjct: 20  ALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLLNSI-------DPTT 72

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            AP  L +APTRELAVQV       Y+K   G+ V    GG S+ ++   L+ G  I+VG
Sbjct: 73  NAPQILVLAPTRELAVQVAEAFAS-YSKFMKGMHVLPIYGGQSMQQQLNSLRRGPQIIVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L ++ LKA+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+ 
Sbjct: 132 TPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F
Sbjct: 192 EQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVLEVEKTEGIIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+
Sbjct: 252 VRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIIIATDVAARGLDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R     +   
Sbjct: 312 ERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPM 371

Query: 371 PAPSVEAIRERDAQRI 386
             PS E + ER   R+
Sbjct: 372 DVPSPETVTERRLSRL 387


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score =  240 bits (612), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 218/359 (60%), Gaps = 11/359 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L+ N+
Sbjct: 104 PRIV-EKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNE 162

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           +      PLA+ +APTRELA QV +E    + ++  +  +C+ GGV ++++ R L  G  
Sbjct: 163 KNGNGRNPLAIILAPTRELARQVEKE----FRESAPLDTLCVYGGVPINQQMRALNYGVD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I++  P+ R+ ++FS
Sbjct: 219 IVVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  ++  Y KD V +++  ++ Q     I   ++      + + I  +++ H  
Sbjct: 279 ATMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHAN 338

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R   V+    +Q  AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 339 VGKCIVFTQTKREADRLAYVMGRS-YQCQALHGDISQNQRERTLSGFRDGRFNILVATDV 397

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P+++LV+H E+ +  E  +HRSGRT RAG+KG ++ +     Q RA R+  +
Sbjct: 398 AARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYE-QTRAVRVIEQ 455


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/528 (30%), Positives = 264/528 (50%), Gaps = 38/528 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L   +  +N +  
Sbjct: 15  IQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQKVNPKNKKLQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  + + PTRELA+QV  E+  L     G+ V    GG  + ++ R L+NG  I++
Sbjct: 75  ------GIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKNGTQIII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIE IL+  P++R+ ++FSAT+
Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + K +QK A  + +  +     +I+     V   +++  +  +L  +  K ++V
Sbjct: 189 PKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVLARLLDIYTPKLSVV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +ATDVAARGID
Sbjct: 249 FCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDILVATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + R     +  
Sbjct: 309 VDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAK-----HDPEKIAAGFLR 422
           +  PS+  +     + IL D   +D I    D   M++ +  +     +    +AA FL+
Sbjct: 369 QKVPSLNDVATTKMENILDD---IDQIIVNEDLTLMINAIQERVNDSDYTAMDMAAAFLK 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +   G+ + EE   +                   G +     G     +++G KQKA+  
Sbjct: 426 MC-TGMTSEEEQEEMDF-----------------GDTGAEEPGMVRLFINIGKKQKAKPG 467

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS---ADGVDLLRRTVKL 527
            ++  L   +G+  + IG I +    TFVEV    A  V L  + VK+
Sbjct: 468 DILGALAGETGMPGKLIGTIDMFDKYTFVEVPREYAKDVLLAMKNVKI 515


>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
 gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
          Length = 527

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 160/528 (30%), Positives = 268/528 (50%), Gaps = 48/528 (9%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+++ +A+ + G+   + +Q   +      KD++  AQTG+GKT AFG+ L  
Sbjct: 6   FEDLGLCPEIV-KAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRER 118
            +  +N +        A+ + PTRELA+QV  E+  L AK   G+ V    GG  +  + 
Sbjct: 65  KIEPKNKKLQ------AVVLCPTRELAIQVAEEIRNL-AKYMHGIKVLPIYGGQEIVTQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G  +++GTPGR+ DH+R K + +  +  +VLDEADEML++GFR+DIE IL+  P+
Sbjct: 118 RSLKSGTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+  AI  + K +QK+A  V +  +     +I+     V    ++  +  +
Sbjct: 178 ERQTVLFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKPKSKEEVLARL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  K ++VFC+T+  V      L    +    L G+L QQ+R   +Q  R G+  + 
Sbjct: 238 LDIYSPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR+G S   +      + + 
Sbjct: 298 VATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKE 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI----------QGDEKKMVDVLL 408
           + R     +  +  PS+  +     + IL +   +D+I          Q  E K+ +   
Sbjct: 358 IQRYCKTKIYAQKVPSLNDVANTKMENILGE---IDNIIETEDLTKYLQAIENKVNESDY 414

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              D   +AA FL+                L SG++    +   F   G       G   
Sbjct: 415 TAMD---MAAAFLK----------------LSSGQNEVSPEEMEFGDTGAEE---AGMVR 452

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             +++G K KA+   ++  +   SGI  + IG+I +    TFVEV  +
Sbjct: 453 LFINIGKKNKAKPGDIVGAIAGESGIPGKLIGSIDMYDKYTFVEVPKE 500


>gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
 gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
          Length = 643

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 204/354 (57%), Gaps = 14/354 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346


>gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 643

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 204/354 (57%), Gaps = 14/354 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346


>gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
 gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
          Length = 494

 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 200/343 (58%), Gaps = 2/343 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++E GY+ +T +Q   +   L  +DV+ +AQTG+GKT AF L L   +L  E+   SPA
Sbjct: 33  AVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQKMLKHESSSTSPA 92

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL +APTRELA QV   ++     T +   V  GG+ +  +  +L+ G  +++ T
Sbjct: 93  RHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTAELKRGVEVLIAT 152

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  K  ++S ++ VVLDEAD MLD+GF  D++ IL   PK R+ L+FSAT SP
Sbjct: 153 PGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRQTLLFSATFSP 212

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +Y +D + V  A  N   S ++ R   V   D+ NA+  +LR      +IVF 
Sbjct: 213 EIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQLLRTRAITQSIVFV 272

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +++   +R  +       +  AL G+ SQ ER  AL   + G   + +ATDVAARG+D+ 
Sbjct: 273 NSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIA 332

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           DL  V + ++  N E+ +HR GRTGRAG  G+++ ++ ++  R
Sbjct: 333 DLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDAR 375


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 218/382 (57%), Gaps = 16/382 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  + +AL++RG   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ + + ++ EN
Sbjct: 144 IPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIINNIIREN 203

Query: 67  DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           +    A     AP AL +APTRELA QV RE         ++  +C+ GGV++  ++R L
Sbjct: 204 EENRVARRSGRAPRALVLAPTRELAKQVEREF---MESAPMLSTICVYGGVAISSQQRLL 260

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I VGTPGR+ D I    L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+
Sbjct: 261 TRGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILEQMPNQRQ 320

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240
            ++FSAT+   +  L++ Y  DA+ +++  E+ +   +  R  L A++    A  +IL  
Sbjct: 321 SMLFSATMPTWVKKLSRKYLHDALTIDLVGESDEK--LADRIKLYAVATVPQAKRSILND 378

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               Y      IVF  T+         +A  L    AL G++SQ +R   L   R+G   
Sbjct: 379 LIAVYGKGGKTIVFTQTKRDADDVATAMARTL-GCEALHGDISQSQREKTLNAFREGNFS 437

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+P+++LVIH E+ ++PE  +HRSGRTGRAG+ G ++ +      R  
Sbjct: 438 VLVATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRTM 497

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             + R+         AP VE +
Sbjct: 498 RLIERDVGCKFTKISAPRVEDV 519


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score =  239 bits (611), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 240/434 (55%), Gaps = 27/434 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A++E+G+   T VQ+ ++ P L  +EK+++V A+TG+GKT AFG+ L   L         
Sbjct: 15  AINEKGFEKPTPVQKRVI-PILLNKEKNLIVQAKTGTGKTAAFGIPLIELL-------ES 66

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L  K   ++ V  GG S+ R+   L+ G  IVVGT
Sbjct: 67  KGYVQAIILTPTRELALQVSEEINSLKRKRLKILPVY-GGQSISRQIEHLKRGVDIVVGT 125

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+  K +++S ++  +LDEADEMLD+GF DD+E IL S+  ++  LMFSATI  
Sbjct: 126 PGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFSATIPR 185

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK Y K+   + IA +    +  +   + +  +D+  A+  I+        +VFC
Sbjct: 186 RIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFYGMVFC 245

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   +  L E  +   AL G+ SQ +R   L+  ++ R  + +ATDVAARGID+ 
Sbjct: 246 RTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAARGIDIS 305

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            L  VI+  +  NPE+ +HR GRTGRAGR+G+++ FV P+   R+  R+ + +   +   
Sbjct: 306 GLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEY-RQLFRIKKFSKAKIKEG 364

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGFLRI 423
             PSVE I    ++RI  + L       +EKK       + D LL K +P ++ A  L +
Sbjct: 365 KIPSVEQIIRAKSERIKSELL------KEEKKLPNIYYNLADELLKKTNPREVIAKLLNM 418

Query: 424 HRAGLCAPEEITPV 437
               L  PE+   V
Sbjct: 419 SFKSL-NPEKYEKV 431


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 210/361 (58%), Gaps = 4/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPL- 76
           GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  EN   SPA  P+ 
Sbjct: 2   GYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPVR 61

Query: 77  ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+ G  ++V TPGRL
Sbjct: 62  ALVLLPTRELADQVAQQIA-LYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRL 120

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+FSAT SP I  
Sbjct: 121 LDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKR 180

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L+    + A +F +++ 
Sbjct: 181 LAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQAFIFSNSKL 240

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
             +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG+D+ D+  
Sbjct: 241 GCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDVPA 300

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + +     +  EPAP +
Sbjct: 301 VFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIEVEPAPML 360

Query: 376 E 376
           +
Sbjct: 361 D 361


>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
 gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
          Length = 735

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 223/389 (57%), Gaps = 12/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + + L  RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  + 
Sbjct: 103 LPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 162

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           +    +      P  L +APTRELA QV +E++        +  VC+ GGVS   ++  L
Sbjct: 163 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYATQQNAL 219

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D ++G  L +  ++ +VLDEAD+ML  GF +D+E IL+S P KR+
Sbjct: 220 SRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILESLPSKRQ 279

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT+   +  LA+ Y  + +++++    E +    I   A+    + +   + +++
Sbjct: 280 SMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLV 339

Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y   +  I+F  T+      +  L + +    AL G++SQ +R   L   R G+  V 
Sbjct: 340 TVYAKGEKTIIFTRTKRDADEVSMALTQSIASE-ALHGDISQHQRERTLNGFRQGKFTVL 398

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 399 VATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRS 458

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387
           L R+A     +   P++E + E   ++++
Sbjct: 459 LERDAGCKFEFVSPPAIEELLESSTEQVV 487


>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 520

 Score =  239 bits (610), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 136/341 (39%), Positives = 203/341 (59%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           +  A++E GY  +T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  EN   
Sbjct: 33  LARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQRLMKHENAST 92

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHI 127
           SPA  P+ AL + PTRELA QV ++++ LYAK T +  AV  GG+ +  +  +L+ G  +
Sbjct: 93  SPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSAVVFGGMDMKPQTLELKAGVEV 151

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+FSA
Sbjct: 152 LVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLLFSA 211

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T SP I  LA +Y ++ + + +A  N   S ++     V   D+ +A++ I+R    K A
Sbjct: 212 TFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDDDKRHALLQIVRSKDIKQA 271

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            VF +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG
Sbjct: 272 FVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARG 331

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +
Sbjct: 332 LDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFV 372


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 138/375 (36%), Positives = 213/375 (56%), Gaps = 10/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK      V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + K+A  ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ +++G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNSRISPMK 371

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 372 VPSPETVAERRLSRL 386


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 265/528 (50%), Gaps = 46/528 (8%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +  T
Sbjct: 6   FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           +   N          A+ + PTRELA+QV  E+  L   + G+      GG  + R+ + 
Sbjct: 66  IDPNNRSLQ------AVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +V+GTPGR  DHI  K L + ++K ++LDEADEMLD+GFR+DIE IL   P++R
Sbjct: 120 LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +   FSAT+   I  L K YQKD   + +  +    S+     +    S++   +  ++ 
Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRLVD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+         L    +   AL G+L Q +R   +   R+G   + +A
Sbjct: 240 VYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+GMS  FV  + M R+ + +
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEM-RKMKDI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDA--------QRILQDPL-----FLDSIQGDEK-KMVD 405
            R     ++    P++  + E+          Q I +  L     +L++   DE   MVD
Sbjct: 359 ERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLENFCNDEDYAMVD 418

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           +  A     K++ G           P             R R D +    G G++D   G
Sbjct: 419 IAAALV---KLSLGEEMKEEIIEEKPR------------RERGDRKG---GTGAKD---G 457

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                +++G  Q+ +A+ ++  +    GI  + +G I +    TFVE+
Sbjct: 458 MIRLFINIGRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEI 505


>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 553

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 285/554 (51%), Gaps = 25/554 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  +L  KD++  AQTG+GKT AFG+ L   +  +
Sbjct: 10  NLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEKIDPK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N +        A+ + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G
Sbjct: 70  NKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKDG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL   P++R+ +M
Sbjct: 124 VQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +AK +QKD   V +  ++     +      V   ++   +  +L  +  
Sbjct: 184 FSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMYAP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V      L    +    L G+L Q +R   +   R GR  + +ATDVA
Sbjct: 244 KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R   
Sbjct: 304 ARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIA 417
             +V +P PS++ + E  A +IL   + +  D+   D  +++D++  K     +    +A
Sbjct: 364 TKIVPQPIPSIDDVTEIKADKILCQAEEILQDN---DMDRLIDIIERKVLEEDYTTLDLA 420

Query: 418 AGFLRI--HRAGLCAPEEITPV----SLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWFS 470
           AG LRI          E+  P+     L   RDR +     +   G G+R      +   
Sbjct: 421 AGLLRIIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRSGGRGNRSGGDDMARLF 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + +K D  
Sbjct: 481 INIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPREQADIVLQAMK-DAR 539

Query: 531 IQLKYLGGEKPDFR 544
           I+ K +  EK + R
Sbjct: 540 IKGKNIHIEKANRR 553


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/375 (38%), Positives = 211/375 (56%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L ST+       S  +
Sbjct: 20  SLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSTI------DSSLN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    YAK   G+ V    GG S+H++   L+ G  ++VGT
Sbjct: 74  APQILVLAPTRELAVQVA-EAFASYAKHMKGLHVLPIYGGQSMHQQLNALRRGPQVIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVLEVESTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G   + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ ++  + E  +HR GRT RAGR GM++  +     R    + R     +    
Sbjct: 313 RIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIERATKSRISPMD 372

Query: 372 APSVEAIRERDAQRI 386
            PS E++ ER   R+
Sbjct: 373 VPSPESVTERRLSRL 387


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 180/589 (30%), Positives = 296/589 (50%), Gaps = 46/589 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+S+ G+   + +Q+  +   L   DVL  AQTGSGKT AF L L + +  + 
Sbjct: 13  LPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLLAQIDLDK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   P  L +APTRELA+QV    E    YAK   +V +  GG     + R L+ G
Sbjct: 73  ------KYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVTL-YGGQRYDIQLRALKQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   L++S+L+ +VLDEADEML +GF DD+E ++   P++ +  +
Sbjct: 126 AQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEEHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K + KD   + I S    + DI      V    +++A++  L     
Sbjct: 186 FSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVENF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L+ +R+G   + +ATDVA
Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNIEHLTK 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++A R    +  +   L    ++     + D+  A  D E IAA  L
Sbjct: 366 KPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLELYRSLLEDMFTADQDQEDIAAAML 425

Query: 422 RIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGSS-----------W 468
            + +      + I P   +  R   R R+D R      G R+N + +             
Sbjct: 426 MLLQG---KQKLILPPDPIIDRKTSRERNDRRE----RGGRENPRSAERRGYGNPQPMDL 478

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG     E R ++  +     IN + IG I++  D + +E+      + +++  + 
Sbjct: 479 YRIEVGRLDGVEVRHIVGAIANEGDINSRYIGHIKLYDDHSTIELPQGMPKELLNIFGKA 538

Query: 525 VKLDKGIQLKYL----GG---EKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++K +Q+ ++    GG   E+ DF G +     SK    G   RF R
Sbjct: 539 RVMNKQMQMSFVSAVNGGGNRERDDFGGDRRG---SKRKGRGEEPRFGR 584


>gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 641

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +
Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 174/536 (32%), Positives = 270/536 (50%), Gaps = 40/536 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           M+ F N+     I EAL ++G+   T +QE  +   L  EKD++  AQTG+GKT AFGL 
Sbjct: 1   MEKFRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +      EN R   A    A+ + PTRELA+QV  E+        V VA   GG  +  +
Sbjct: 61  II-----ENVR-EGAGHVQAIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA IVVGTPGR+ DHIR K L++S +   VLDEADEM ++GF +++  I++++ 
Sbjct: 115 LKALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR L+FSAT+   +  +AK +  D   V++  E  +    +     V   DR  A+  
Sbjct: 175 EDRRTLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        +VFC TRA   R    LAE  +    + G+LSQ  R + L   R  R ++
Sbjct: 235 VVDAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PDL  V++  L  +P++ +HR GRTGRAG+KG++V +I      +  
Sbjct: 295 LVATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDV---LLAKHD 412
            + +   + V  +P P+++ + +    R+  +   L  I   G     +D+   LL   D
Sbjct: 355 YITKITKLRVDKKPLPTIDQVIDVKKSRMGAE---LSEIVEAGKHLSYLDLAHELLEGVD 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV---GGGSRDNFKGSSWF 469
           P +  A  L+  + G+                    D R+++     GG   N +G   F
Sbjct: 412 PIEAVAALLKHSQGGVL-------------------DKRSYRKIEECGGPAAN-RGRVRF 451

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           +  +G       R L+ M+CR + IN   I  +++Q   +   V A   D + R V
Sbjct: 452 TAHIGRAHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVMRAV 507


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/374 (36%), Positives = 219/374 (58%), Gaps = 11/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L+ RG   L  +Q A+L+P ++ KD++  A+TG+GKT+AFG+ +   +L  N++  
Sbjct: 95  IVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNG 154

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
               PLA+ +APTRELA QV +E    + ++  + ++C+ GGV +  + R L  G  +VV
Sbjct: 155 SGRNPLAIILAPTRELARQVEKE----FKESAPLDSLCVYGGVPISHQMRALNYGVDVVV 210

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I+++ P+ R+ ++FSAT+
Sbjct: 211 GTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATM 270

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AKN 246
              I  +   Y KD + +++  +  Q     I   ++      + + +  +++ H     
Sbjct: 271 PSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGK 330

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+    R    +    +   AL G++SQ +R   L   RDGR  + +ATDVAAR
Sbjct: 331 CIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGRFNILVATDVAAR 389

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++LVIH EL +  E  +HRSGRT RAG+KG S  +I  N Q RA R+  E ++ 
Sbjct: 390 GLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKG-SAILIYTNDQARAVRII-EQDIG 447

Query: 367 VVWEPAPSVEAIRE 380
             +   P +E   E
Sbjct: 448 CKFTELPKIEVADE 461


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 264/528 (50%), Gaps = 46/528 (8%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +  T
Sbjct: 6   FEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPILET 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           +   N          A+ + PTRELA+QV  E+  L   + G+      GG  + R+ + 
Sbjct: 66  IDPNNRSLQ------AVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQIKS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +V+GTPGR  DHI  K L + ++K ++LDEADEMLD+GFR+DIE IL   P++R
Sbjct: 120 LKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +   FSAT+   I  L K YQKD   + +  +    S+     +    S++   +  ++ 
Sbjct: 180 QTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCRLVD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+         L    +   AL G+L Q +R   +   R+G   + +A
Sbjct: 240 VYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+GMS  FV  + M R+ + +
Sbjct: 300 TDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEM-RKMKDI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDA--------QRILQDPL-----FLDSIQGDEK-KMVD 405
            R     ++    P++  + E+          Q I +  L     +L+    DE   MVD
Sbjct: 359 ERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLEGFCNDEDYAMVD 418

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           +  A     K++ G           P             R R D +    G G++D   G
Sbjct: 419 IAAALV---KLSLGEEMKEEIIEEKPR------------RERGDRKG---GTGAKD---G 457

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                +++G  Q+ +A+ ++  +    GI  + +G I +    TFVE+
Sbjct: 458 MIRLFINIGRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEI 505


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/420 (35%), Positives = 233/420 (55%), Gaps = 15/420 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  + + I ++L E G+V  T +Q+  +   L   D++  AQTG+GKT AFG+ L S + 
Sbjct: 5   FSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGI- 63

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                 SP    + A+ + PTRELA+QV  EL  +    GV      GGVS+ R+   L+
Sbjct: 64  ------SPRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117

Query: 123 NGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G H I+VGTPGR+ D I    L +  ++  VLDEAD+MLD+GF +DIE IL  +PK+++
Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  L   Y K   +     +      +  R +LV   D+  A+  +L+ 
Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILVRSEDKIKALEKLLKE 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H   + IVF  T+   +   K L        A+ G+LSQ++R   ++  R+G+ +V +AT
Sbjct: 238 HEGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLVAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ D+ LVI+ EL  NPE+ +HR GRTGRAGR+G+++ ++ +  +R   RL+R
Sbjct: 298 DVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKR---RLYR 354

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              +  V      V  ++E   + +  D    +S+    K++   LL++  PE++ A  L
Sbjct: 355 IKGLKGVRPERFRVNTVKELKKELLEADA---NSLPPYVKRLASELLSERSPEELVAVLL 411


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 229/419 (54%), Gaps = 12/419 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL +   +   N
Sbjct: 20  LSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPILEHIDLNN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ ++L++   
Sbjct: 80  KNIQ------ALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKSHPQ 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI  K + I  ++ +VLDEADEML++GF DDIE I+  +P +R+ L+FS
Sbjct: 134 ILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I      K 
Sbjct: 194 ATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKL 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +ATDVAAR
Sbjct: 254 AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363
           G+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV FV P  M   R  E L ++ 
Sbjct: 314 GLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAVEDLTKKR 373

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFL 421
              +  EPA   +A   +      +    +D+ +  E +  VD L AK+  E++AA  L
Sbjct: 374 MTPL--EPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYTAEQLAAAVL 430


>gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 613

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 277/554 (50%), Gaps = 27/554 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+    + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473
            +   +  L  P +  P+         R D R        R   KG         + + V
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLYRIEV 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528
           G     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T  L+
Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQ-GMPKELLQQFGKTRVLN 542

Query: 529 KGIQLKYLGGEKPD 542
           K +Q+ +LG  K D
Sbjct: 543 KQMQMSFLGAVKSD 556


>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/380 (36%), Positives = 226/380 (59%), Gaps = 12/380 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           IPQ + +AL++RG   L  +Q A+L+P ++ +D++  A+TG+GKT+AFG+ +   +L   
Sbjct: 54  IPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGKTLAFGIPIIHNILKAH 113

Query: 65  ENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           E DR S  S  AP AL +APTRELA QV RE         ++  VC+ GGVS+  ++R L
Sbjct: 114 EADRTSRRSGRAPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVSITTQQRQL 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  + VGTPGR+ D I  + L++  +  +VLDEAD+ML +GF +D+E IL+  P++R+
Sbjct: 171 QRGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEEDVERILEQMPEERQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT+   +  L+K Y K  + +++  ++ +     I   AV +  + +   + +++
Sbjct: 231 SMLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCIPPAAKRTVLNDLI 290

Query: 240 RYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             HG+    IVF  T+        VL   L    AL G+++Q +R   L   R+GR  V 
Sbjct: 291 SVHGSVGKTIVFTQTKRDADDVASVLGRTL-GCEALHGDITQSQRERTLASFREGRFSVL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P+++LV+H E+ ++PE  +HRSGRTGRAG+ G ++ +  +N +R    
Sbjct: 350 VATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQKRTMRN 409

Query: 359 LFREANVSVVWEPAPSVEAI 378
           +  +          P +E +
Sbjct: 410 IEMDVGCKFTLMSPPQMEEV 429


>gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 644

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +
Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 249/458 (54%), Gaps = 19/458 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE +P  +   +AL E  ++  T +Q  ++   ++  DV+  AQTG+GKT AFG+ +  
Sbjct: 4   LFEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +  +       S   +L + PTREL +QV  EL+  L     + +AV  GG S  ++ R
Sbjct: 64  KIDYK------LSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFR 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  H+++ TPGR+ DHI    +++S LK + LDEADEML +GF++ +E IL   P++
Sbjct: 118 ALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ P+I  +A  YQK+   + +  +    + I+    LV   D++  +V +L
Sbjct: 178 RQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ I
Sbjct: 238 DLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARGID+ D+++V++ +L    E  +HR GRTGRAG+KG++  F+ P+     ++ 
Sbjct: 298 ATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKL 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDP 413
           E   +E    V +   PSVE I+++  +   Q   D +  +S +     M++ LL K   
Sbjct: 358 EYYLKE---KVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFSS 414

Query: 414 EKIAAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
           E+I  G L  I        + I P    + R+ F ++S
Sbjct: 415 EQIIQGLLTNIQPKAKNYTDIIPPRMTFTPRETFNNNS 452


>gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
 gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
          Length = 644

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +
Sbjct: 353 KMREIERIISKKFIVGKMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 44  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRERGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEVEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390


>gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 613

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 181/554 (32%), Positives = 277/554 (50%), Gaps = 27/554 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 12  LPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPL----LAQI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YA+ G  +    GG     + R L+ G
Sbjct: 68  D--PSEKHPQMLVMAPTRELAIQVADACELFVKYAQ-GTRIVTLYGGQRYDIQLRALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 125 AQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L     
Sbjct: 185 FSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDF 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+    + +ATDVA
Sbjct: 245 DAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 305 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++  R +     +   L    ++     + D+  A  D E IAA  L
Sbjct: 365 KGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENIAAAML 424

Query: 422 RI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------SWFSLSV 473
            +   +  L  P +  P+         R D R        R   KG         + + V
Sbjct: 425 MLLQGKQKLILPPD-PPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLYRIEV 483

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RTVKLD 528
           G     E R ++  +     IN + IG I++  D T VE+   G+  +LL+   +T  L+
Sbjct: 484 GRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVEL-PQGMPKELLQQFGKTRVLN 542

Query: 529 KGIQLKYLGGEKPD 542
           K +Q+ +LG  K D
Sbjct: 543 KQMQMSFLGAVKSD 556


>gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
          Length = 644

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQVDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +
Sbjct: 353 KMREIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402


>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 587

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 143/415 (34%), Positives = 226/415 (54%), Gaps = 11/415 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL ++G+   T +QE ++   L+ E D++  AQTG+GKT AFG  +   +  ++     
Sbjct: 18  KALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAFGAPIIEKIPEKSGHVQ- 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  EL  +     + +    GG S+ ++ R L++G  IVVGT
Sbjct: 77  -----AIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLKSGVDIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+  K LN+ H+   VLDEADEML++GF DDI+ IL S+   +RML FSAT+  
Sbjct: 132 PGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNKRMLFFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + K + ++   + I  E    +  +     V  SD+  A+  I+        +VFC
Sbjct: 192 AILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIIDIEDEFYGLVFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   S+  + L++  +   AL G+LSQQER   L   R  +  +  ATDVAARGID+ 
Sbjct: 252 RTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAARGIDIM 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +   +    
Sbjct: 312 DLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEMKKGH 371

Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            P ++ + +    R+   L++ +  +   GD  +M   LL ++  EKI A  L+ 
Sbjct: 372 IPEIKDVIKAKRARVRTELEETIKTEEY-GDCLEMSQKLLEEYPAEKILAALLKF 425


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score =  239 bits (609), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/378 (38%), Positives = 209/378 (55%), Gaps = 19/378 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G+   T +Q   + P L  KD++  A+TGSGKT AFG++L   L   N R     A
Sbjct: 17  LNQLGFAQPTEIQAKAIAPGLAGKDIIAMAKTGSGKTAAFGISLVERL---NPRLF---A 70

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV + + E   A+  + V    GGV++  +   L +GAHIVVGTPG
Sbjct: 71  VQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQIGSLSHGAHIVVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R + L++  LK VVLDEAD MLD+GF++ +E IL  +P  R+ +MFSAT    I
Sbjct: 131 RIQDHLRKQTLSLVRLKTVVLDEADRMLDMGFQEAMEDILSQTPPSRQTMMFSATWPAPI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K YQK  V V  A +   + DI+     V+   + +AIV +L     ++ IVFC+T
Sbjct: 191 RELSKQYQKSPVDVR-AEDTGDNPDIEELFYEVSPQSKSDAIVALLSERQPESCIVFCTT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L E  F  + L G+L Q++R + L    +    + +ATDVAARG+D+  L
Sbjct: 250 KQQCDDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSILVATDVAARGLDIKSL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            LVI+AE + +PE   HR GRTGRAG +G +V         +  R+  E   SV W    
Sbjct: 310 PLVINAEPARDPEVHTHRIGRTGRAGEQGHAVTFCTPAQGHKITRIESERGRSVTWG--- 366

Query: 374 SVEAIRERDAQRILQDPL 391
                   D +++L  PL
Sbjct: 367 --------DTEKLLATPL 376


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 277/518 (53%), Gaps = 19/518 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ + G+ + + VQEA +   L  +DVL  AQTG+GKT +FG+ +   +  +
Sbjct: 7   NLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMIEGIEDK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           +           L + PTRELA QV  EL+ L  Y K   +V +  GG  + ++ RDL+ 
Sbjct: 67  SHNLQ------GLVLVPTRELARQVSDELKKLAKYKKFISIVPIY-GGADMGKQLRDLKK 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVVGTPGR+ DH++ K + +  LK + LDEADEM D+GFRDD++ I++ +   R+ L
Sbjct: 120 GADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQTL 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT    I   ++ YQ D  +V I  +      I+   + +  + +   +  ++  H 
Sbjct: 180 FFSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLILIHK 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +I+FC+T+  V      +A+  ++V +L G++ Q  R N ++  R+G   V IATDV
Sbjct: 240 PKKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D++LV + +L    E  +HR GRT RAG+KG S   +      + + + + A
Sbjct: 300 AARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKEIEKYA 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAK-HDPEKIAA 418
           N  +     P+   + E+++   L D +  + I+ +++    ++++ LLA+ H    I+A
Sbjct: 360 NTKMEKMKLPTKSDV-EKESLDNLFDKVNKNIIRAEDQENYTEVLNKLLAEGHSLYDISA 418

Query: 419 GFLRIHRAGL--CAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             L++ +        +++  V    G +  R+ DS   K         KG   F ++ G 
Sbjct: 419 SLLKMVKESTNKTKIKDLDRVDYGKGFEMSRESDSSKRKSKDKGMKKIKGPKIF-INKGK 477

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +   ++R ++ +L + + +    IG I + P+ +FVE+
Sbjct: 478 RDGLDSRDIIKLLGKHTDLAPSDIGRINIMPNFSFVEI 515


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 244/445 (54%), Gaps = 30/445 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+  +G+   T +Q A +   L  KDVL  A+TG+GKT+AFG+ +A+ L A  +R  
Sbjct: 12  VAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAARER-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + PTRELA+QV +ELEWL     + +    GG    ++   L+ G  +VV 
Sbjct: 70  -GRAPRALILTPTRELALQVAKELEWLAPH--LTITPIYGGTGYGKQAEALKRGTDVVVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D++  + L++S ++  VLDEADEML +GF + +E +L+++P  R+ L+FSAT+ 
Sbjct: 127 TPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFSATLP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGAKNAI 248
                L++ YQK A+ +N+  +      I Y   A+   + +R + + ++L  +  +  I
Sbjct: 187 TWARRLSERYQKAAIHINVIKDE----AISYEEVAIQAPIHNRLSVLSDLLFAYAPERTI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ST+A  +     L         + G++ Q +R   ++  R G   V +ATDVAARG+
Sbjct: 243 VFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAARGL 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA--NVS 366
           D+P+++LV+H  L    E+ LHRSGRTGRAGR G  V +     +R  E L RE   N  
Sbjct: 303 DIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRNFK 362

Query: 367 VVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAAGFL 421
            V  P P   + A     A+RI + P      + D+K   +  + L+A+   + + AG L
Sbjct: 363 RVNPPTPEEVMAAKWAMLARRIAKQP------EADKKLWREQAERLIAEGGVDAV-AGML 415

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRF 446
            +   G  AP   TP SL++G + +
Sbjct: 416 ALILGG--AP---TPKSLMTGEENW 435


>gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1]
 gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
          Length = 621

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/368 (40%), Positives = 211/368 (57%), Gaps = 31/368 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L        
Sbjct: 57  LPPLV-EALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL------- 108

Query: 67  DRFSP-ASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            R +P A AP    AL + PTRELA+QV   +     K G+ V    GG  + ++ R L+
Sbjct: 109 QRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLK 168

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGR  DH++ K L +  ++ VVLDEADEMLD+GF +D+E IL S+P+KR+ 
Sbjct: 169 RGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQT 228

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN---------RQHSDIDYRAVLVALSDRDN 233
            +FSAT+ P I ++A+ + ++ VRV IA E          RQ + I  RA  VA   R  
Sbjct: 229 ALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSR-- 286

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
               +L       AIVFC TR  V   T  L  H ++  AL G +SQ++R   ++ ++  
Sbjct: 287 ----VLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSH 342

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARG+D+  L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++    +
Sbjct: 343 SADLLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV----E 398

Query: 354 RRAERLFR 361
            R  RL R
Sbjct: 399 PREHRLLR 406


>gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
 gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
          Length = 644

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 229/413 (55%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +  +N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLLQQIDVKN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL 
Sbjct: 113 DSQIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +
Sbjct: 353 KMRDIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFM 402


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 156/510 (30%), Positives = 263/510 (51%), Gaps = 35/510 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G+   + +Q+  +   ++  DV+  AQTG+GKT AFG+ +        ++ +   
Sbjct: 19  ALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIV-------EKTTKDR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA+QV  E+  +    G+ V    GG S+ R+ + L+NGA +++GTPG
Sbjct: 72  VPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGAQVIIGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLMFSATISPA 192
           RL DHI+   L +S +  +VLDEADEMLD+GF +DIE I+ S   +  + L+FSAT+   
Sbjct: 132 RLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTLLFSATMPDP 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L K Y K+   V+I+ E       D         D+  A+  IL        I+FC 
Sbjct: 192 IMALTKKYMKNPKVVSISKEQLTVPLTD--QFYCEAKDKLEALCRILETEDMDKTIIFCR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    +    L G+L+Q +R   ++  R+    V +ATDVAARG+D+ D
Sbjct: 250 TKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVAARGLDISD 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  VI+ ++  +PE+ +HR GRTGRAG+ G+++ F+ P+  +  R  E++ R    ++  
Sbjct: 310 VSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKVIR---TTIKR 366

Query: 370 EPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           +  PS+  +  +++D  + L   +           +V+ +  + +PEKIAA  +R+++ G
Sbjct: 367 KEVPSISDLLEKQKDELKNLISKIIRQENISHYLSIVEEMTEEFEPEKIAAAAIRLYQEG 426

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
              PEE           +   D   FK  G      +G +   +++G ++      ++  
Sbjct: 427 --EPEE-----------KLEVDKEKFKKTGAK----EGMTRLFINIGKEKNISKDDIVNY 469

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           +C    + ++ I  IR+    TF+EV  + 
Sbjct: 470 ICEEGDMKKKDIKNIRILDKFTFLEVPEEA 499


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/394 (36%), Positives = 219/394 (55%), Gaps = 14/394 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E +   GY +LT +Q   L   L  +DV+  A+TGSGKT AFG+ L S L   + R    
Sbjct: 17  ENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSKLDLNSFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               A+ + PTRELA QV +E+  L  + +   V+ +C GGV    +R  L++G H+VVG
Sbjct: 75  ----AMVVCPTRELADQVCKEIRRLARFTQNIKVLTLC-GGVPFGPQRASLEHGVHVVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL +H+  + L +S+LK +VLDEAD MLD+GF + I  ++  +P  R+ L+FSAT +
Sbjct: 130 TPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQTLLFSATYT 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +++ +Q   V V+I + +   SDI+ R   V  S R NA+  +L Y+  ++ +VF
Sbjct: 190 DPIREISQKFQFKPVSVSIETSHHD-SDIEQRFYQVEKSKRTNALGYLLSYYRPESTVVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L    F V AL G+L Q++R   L    +    V +ATDVAARG+D+
Sbjct: 249 CNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D++ VI+ +L  +PE  +HR GRTGRAG+KG+++ +  +    R + +    N    W+
Sbjct: 309 KDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAIEEYQNTPAKWD 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
                +   E   QR  + P+    I G  K  V
Sbjct: 369 EVAPFQMSHE---QR-FEPPMVTLWIDGGRKNKV 398


>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
 gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
          Length = 579

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 157/505 (31%), Positives = 260/505 (51%), Gaps = 29/505 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL ++G+   T +QE ++   L+ E D++  AQTG+GKT AFG  +   +  ++ +   
Sbjct: 18  KALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIEKIPEKSGKVQ- 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  EL  L     + +    GG S+ ++ R L++G  IVVGT
Sbjct: 77  -----AIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLKSGVDIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+  K LN+ ++   VLDEADEML++GF DDI+ IL ++   +RML FSAT+  
Sbjct: 132 PGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + K + K+   V I  E+   +  +     V  SD+  A+  I+        +VFC
Sbjct: 192 PILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEFYGLVFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   S+  + L +  +   AL G+LSQ+ER   L   R  +  + +ATDVAARGID+ 
Sbjct: 252 RTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAARGIDIM 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +  ++    
Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTSKSAMKRGR 371

Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
            P ++ + +    R+   L++ +  +   GD  +M +  L ++  EKI A  L+      
Sbjct: 372 IPEIKDVIKAKRARVKAELEETI-KNEEYGDCLEMSEKFLEEYPAEKILAALLK------ 424

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
                       S ++ F D+S   ++ G S  + KG +   +++G         L   +
Sbjct: 425 -----------YSFKEMF-DESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEKLCEFI 472

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
              +G++   I    + P  +FV V
Sbjct: 473 QEETGVSDLKIRDAEIFPHFSFVTV 497


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 236/419 (56%), Gaps = 18/419 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE G+  ++ +Q+A +   ++ KD++  AQTG+GKT AFG+ L   +        PA+
Sbjct: 73  AVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQV-------DPAN 125

Query: 74  APL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             L A+ + PTRELA+Q   ++ ++     G+ V    GG  + R+ + L NG  IVVGT
Sbjct: 126 KHLQAVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSNGVQIVVGT 185

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   + +  +K +VLDEADEMLD+GFR+DIE IL   P +R+  +FSAT+  
Sbjct: 186 PGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTALFSATMPE 245

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           AI  + K YQK DA  + +  +    + I+     V    +++ +V ++ Y+    +++F
Sbjct: 246 AILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKLKEDVLVRLMDYYNPARSLIF 305

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V +  + L    +    L G+LSQ +R   + + R+GR  + IATDVAARGID+
Sbjct: 306 CNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIATDVAARGIDV 365

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +E V + ++  + E  +HR GRTGRAGR GMS  ++      +   + +  +  +   
Sbjct: 366 SGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREIEKVCHTKIEER 425

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAK-----HDPEKIAAGFLRI 423
             P  + I    +Q++  +   +D I+ GD   +++ +  K     +  E++AAGF+++
Sbjct: 426 HVPKAKEITRVKSQKVFAE--VIDIIENGDISSVLEFVNQKVEEGEYTAEQLAAGFMKL 482


>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
          Length = 509

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 44  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++    E+L +   E
Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 403

Query: 363 ANVSVVWEPA 372
               V+ +PA
Sbjct: 404 VQTLVLDKPA 413


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL  RG   L  +Q+A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N 
Sbjct: 129 PEIV-KALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVIDKIIKFNA 187

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P  L +APTRELA QV  E E+  +   +      GG  + ++ R+L  G  +
Sbjct: 188 KHGRGKNPQCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDV 245

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL   P+KR+ +MFSA
Sbjct: 246 AVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEKRQSMMFSA 305

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           T+   I +L K Y  + + +++  ++ Q     I   ++      R + I  ++  HG  
Sbjct: 306 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVNEHGKG 365

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R    LA+  F+  AL G++SQ +R   L   RDG   + +ATDVA
Sbjct: 366 GKCIVFTQTKRDADRLAFGLAKS-FKCEALHGDISQAQRERTLAGFRDGNFNILVATDVA 424

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LVIH EL +N E  +HR+GRTGRAG+KG ++ +  Q   R  + + +E  
Sbjct: 425 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKMIEKEVG 484

Query: 365 VSVVWEPAPSVE 376
                 P+ +VE
Sbjct: 485 SRFNELPSIAVE 496


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/518 (30%), Positives = 270/518 (52%), Gaps = 19/518 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +  + 
Sbjct: 62  LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTK- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A  P AL +APTRELA+QV    + +  +  GV V    GG +   +   L+ GA
Sbjct: 121 -----ARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL      
Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419
            +     PSV+ + E+  ++  Q     +S+   +      L+ K+  +       IAA 
Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAA 473

Query: 420 FLRIHRAGLCAPEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS---LSVGS 475
              + + G     E  P+      RDR  D  R FK GG  R   +    F    L VG 
Sbjct: 474 LAVMLQGGKNFLMEDKPLPKPKRDRDRRDDRKRDFKSGGKGRGPKRPDGDFETYRLDVGK 533

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +Q      ++  +    G++ +  G I +    T V++
Sbjct: 534 RQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDL 571


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 257/513 (50%), Gaps = 35/513 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ G+   + +Q A +   L   DV+  AQTG+GKT AFG+ L   +       +
Sbjct: 17  IVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAI-------T 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V      GG  + R+ R L+N   IV+G
Sbjct: 70  DFKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNNVQIVIG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    + + H+K +VLDEADEMLD+GF DDIE I+ S P +R+ L+FSAT+ 
Sbjct: 130 TPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLLFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +L K Y K    V I+ E      I+         D+   +  +L        I+F
Sbjct: 190 RPILSLTKKYMKAPKNVTISKEELTVPLIE--QYYFETKDKIEGLCRLLDAEIDGKLIIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V   +  L+   +    L G+LSQ +R   ++  R+G   V IATDVAARGID+
Sbjct: 248 CRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIATDVAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            ++  VI+ ++  +PE+ +HR GRTGRAG  G+++ F+ P+   R+ + + R     +  
Sbjct: 308 DNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREF-RQLKLIERTVKTKIQR 366

Query: 370 EPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
              P+   + ER   +I   +Q  L L++   D   + + LL  +  E++AA  L++ + 
Sbjct: 367 RQLPTAANVIERQRDQIISKMQTVLELNAYH-DYMPIAESLLDDYSAEEVAAAALKLMQE 425

Query: 427 G---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           G   L AP+E          D    D R      G R    G     +++G  QK   + 
Sbjct: 426 GIKALEAPQE----------DILSKDLR----NTGGR---PGMVRLFINIGRSQKIMVKD 468

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           ++  +   + I  + IG I +    TFVEV  D
Sbjct: 469 IVSTIAIEADIPARDIGLINIYDKFTFVEVPED 501


>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
 gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
          Length = 495

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++    E+L +   E
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381

Query: 363 ANVSVVWEPA 372
               V+ +PA
Sbjct: 382 MQTLVLDKPA 391


>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
 gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 213/374 (56%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+++G   L  +Q A+L P ++ KD+   A+TG+GKT+AFG+ +   +L  N
Sbjct: 49  ISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFN 108

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PL + +APTRELA QV  E E+  A   + +    GG  + ++ RDL+ G  
Sbjct: 109 AQHGRGRYPLGIVMAPTRELARQV--EKEFREAAPSLDITCLYGGTPISQQMRDLEYGVD 166

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++   L +S ++ VVLDEAD+ML +GF DDIE IL S P+KR  + FS
Sbjct: 167 VVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFS 226

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L + Y KD + +++   S+ +    I   ++   L  + + +  ++  H  
Sbjct: 227 ATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAK 286

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +A+  ++  AL G++SQ  R   L   R+G   + +ATDV
Sbjct: 287 GGKCIVFTETKRDADRLAYAMAK-TYKCEALHGDISQSVRERTLSGFREGHFNILVATDV 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH  L    E  +HRSGRTGRAG+KG ++ +  Q+  R+   + R+ 
Sbjct: 346 AARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDT 405

Query: 364 NVSVVWEPAPSVEA 377
               +  P  +V+ 
Sbjct: 406 GCKFLELPKIAVDG 419


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 230/427 (53%), Gaps = 36/427 (8%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    +  A+ + GY+ +T +Q   +   L  +DV+ +AQTG+GKT AF L L   
Sbjct: 17  FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
           +L  EN   SPA  P+ AL +APTRELA QV   ++  YA+   +   C+ GG+ +  + 
Sbjct: 77  MLRHENASASPARHPVRALVLAPTRELADQVANNVKT-YARHSQLRVTCVFGGIDMAPQT 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  +++ TPGRL DHI+ K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK
Sbjct: 136 AELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA++Y +D + V +A  N   ++++ R   V   D+   +++I
Sbjct: 196 TRQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVLHI 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF +++   +R  +       +  AL G+ SQ ER  AL   + G   V 
Sbjct: 256 LRERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-- 356
           +ATDVAARG+D+ DL  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    
Sbjct: 316 VATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSD 375

Query: 357 -ERLFREA-----------------------NVSVVWEPAPSVEAIRERDAQRILQDPLF 392
            E+L ++                        +V+VV  PAP       R   R   DP F
Sbjct: 376 IEQLIKKKIEIEAIELNDERPRRPPRREIVDDVAVVDAPAPRY----SRPPSRTSVDPFF 431

Query: 393 LDSIQGD 399
               Q D
Sbjct: 432 ERPYQAD 438


>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 487

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++    E+L +   E
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381

Query: 363 ANVSVVWEPA 372
               V+ +PA
Sbjct: 382 VQTLVLDKPA 391


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/526 (32%), Positives = 266/526 (50%), Gaps = 27/526 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
             +      P  L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  ERK------PQLLVLAPTRELAIQVAEAFQ-VYASFSQKIKVLPVYGGQSYDNQIRQLKR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P++R+  
Sbjct: 126 GVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + + Y KD   V IAS+    S I  R   +A   +  A+  I+    
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEV 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +       L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV
Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + +  
Sbjct: 306 VARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHD----PEKIA 417
              +   P PS+  I E    R  Q     ++ Q D  E  M  V + K +    PE + 
Sbjct: 366 KQPIEAMPIPSISEINETRLSRFKQS--VAEATQDDSIESLMPIVEMIKEENEASPEVLM 423

Query: 418 AGFLRIHRAG--LCAPEEITP-VSLVSGRD------RFRDD-SRAFKVGGGSRDNFKGSS 467
           A  L+I +    L   E   P ++    RD      R RD   R  +V  G+R   +G  
Sbjct: 424 AALLKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEEGMQ 483

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            F + VG    A+   ++  +   + IN + IGAI +  + + V++
Sbjct: 484 RFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDL 529


>gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 648

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 174/530 (32%), Positives = 269/530 (50%), Gaps = 33/530 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   +   I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
           L   +   N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+ 
Sbjct: 61  LIQKINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL  
Sbjct: 114 SQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A+
Sbjct: 174 VPQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFCVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIVDYNPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407
              + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +        
Sbjct: 354 LREIERIIGKKFIAGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEIGDFMPDIYRKLD 410

Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            L+K D  K  ++  F R         E EI   S  SG+D  R + R      G R   
Sbjct: 411 WLSKEDLIKRMVSHEFNRFLEYYRDREEIEIANGSERSGKDGVRRERR-----DGGRQAQ 465

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            G +   +++G         L+ +L +++   R  +G I + P  +F EV
Sbjct: 466 PGYTRLFINLGKMDNFFPNELIGLLNKNTR-GRVELGRIDLMPKFSFFEV 514


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/527 (30%), Positives = 272/527 (51%), Gaps = 22/527 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE +P  +   +AL E  +++ T +Q  ++   ++  DV+  AQTG+GKT AFG+ +  
Sbjct: 4   LFEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPIIE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +   N +     +   L + PTREL +QV  EL+  L     + +AV  GG S  ++ R
Sbjct: 64  KI---NPKIQKTQS---LILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFR 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   H+++ TPGR  DH+    +++S LK + LDEADEML +GF++ +E IL   P++
Sbjct: 118 SLEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ P I  +A  YQKD   + +  +N   + I+    LV   D+   +V +L
Sbjct: 178 RQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ I
Sbjct: 238 DLKKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+++VI+ +L    E  +HR GRTGRAG+KG++  +I      + ++L
Sbjct: 298 ATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKL 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPE 414
                  +     PSV++I+ ++A+ +  +   L+ I+ ++++     +   LL     E
Sbjct: 358 EYYLKEKITLLDIPSVQSIKLQNAKDL--EKKILNIIEKNKEETTPNPLAQKLLENFSSE 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +I  G L+          EI P  + +     R RF  +SR    G       K S++  
Sbjct: 416 QIIQGLLKNFLPKERNYTEIIPPRINTNNSFTRSRFGFESRFGSYGSNDSYKRKNSNFIE 475

Query: 471 --LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
             +++G K       L+ +L     I  ++IG I+     T  EV +
Sbjct: 476 VVINLGKKDNINPPVLLKLLKDHFKIYGKNIGNIKHLTHETIFEVES 522


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 152/426 (35%), Positives = 232/426 (54%), Gaps = 13/426 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  ENIDLDNKNIQ------ALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I  +K +VLDEADEML++GF DDIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V    +++ + +  IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRARDNEKFDTMTRIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG +G+SV FV P  M   R  
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415
           E L ++    +  EPA   EA   +      +    ++++  D+ +  V+ L A++  E+
Sbjct: 355 EDLTKKRMTPL--EPATLQEARIGKIKNAAGEVAKLVNTVDADDIQSEVEKLTAQYSSEQ 412

Query: 416 IAAGFL 421
           +AA  L
Sbjct: 413 LAAALL 418


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/569 (29%), Positives = 288/569 (50%), Gaps = 60/569 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +QE  +   ++  D++  + TG+GKT AFG+    ++  E+ R     +   L
Sbjct: 2   GFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQEDPR-----SVQVL 56

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA+Q   EL+ L      V    + GG S+ R+  DL+ GA+IVVGTPGR+ D
Sbjct: 57  ILCPTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVMD 116

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+  + L + +LK V+LDEADEML++GFR+DIE IL   P++R+ ++FSAT+ P I  + 
Sbjct: 117 HMNRRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAIT 176

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +QKD   + IA+++R    I+      A+  + +A+  +L  +  K+A+VFC+T+ +V
Sbjct: 177 KQFQKDPTVIKIAAKHRTVDTIEQYYYETAMGRKTDALRLLLLAYEPKSAMVFCNTKRTV 236

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L +   Q   L G++ Q +R+  +   + GR  V +ATDVAARGID+  ++LV 
Sbjct: 237 DELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLVF 296

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEPAPS-- 374
           + +L  + E  +HR GRTGRAG+ G ++ ++    Q  A R + +     ++ +  P+  
Sbjct: 297 NYDLPQDNEYYIHRIGRTGRAGKSGTALTLVSGRRQVFALRDIAKYTKAEIIQKALPTRA 356

Query: 375 ------VEAIRERDAQRILQDPL-----FLDSIQGD---EKKMVDVLLAKHDPEKIAAGF 420
                  + + +  AQ   + P       L+ +  +    +++  VLL     EK++A  
Sbjct: 357 DLAAKKTQQLHDAVAQACAEQPSSRAEELLNRLTEEGYTAQQIAQVLLE----EKLSASL 412

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
             I       PE   P  +     R R      KV               +++G +Q+  
Sbjct: 413 QSI-------PEFDAPQPIRREGKRGRSAVTTAKV--------------DINIGRQQRIA 451

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
             +++  L  ++G++ +  G I +    T VEV    +D +  ++   K      + G K
Sbjct: 452 PNFILGALVDATGLSGKDFGKIDIFDQHTTVEVPEAEMDFVIDSLNAGK------INGHK 505

Query: 541 PDFRGYKS------SGFKSKNSQDGATKR 563
              + Y+       S F+ K+  DG  +R
Sbjct: 506 VTVKRYEGKETGSRSDFRGKSRNDGFNRR 534


>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
 gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/343 (39%), Positives = 200/343 (58%), Gaps = 2/343 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  A+++ GYVN T +Q  ++   L  KDV+ SAQTG+GKT  F L L   L A  N   
Sbjct: 16  ILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYANTSV 75

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL +APTRELA+Q+   +        +  AV  GG+++  +   LQ G  I+
Sbjct: 76  SPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGVEIL 135

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  K +N S  + +VLDEAD MLD+GF  DI+ ++     +R+ LMFSAT
Sbjct: 136 VATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSAT 195

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA +  K  VR+  A +N  +  I +    V    +   +++++R    K A+
Sbjct: 196 FSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHLIRQQNLKQAL 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+   S   ++L+ H    VA+ G+ +QQ+R+ AL   + G  ++ +ATDVAARGI
Sbjct: 256 IFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQILVATDVAARGI 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  L  VI+ EL  NPE+ +HR GRTGRAG KG ++ ++ ++
Sbjct: 316 DIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEH 358


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 188/581 (32%), Positives = 294/581 (50%), Gaps = 56/581 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  + V+  AQTG+GKT AF L + S L  +        
Sbjct: 35  ALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPILSRLDLKQ------K 88

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P AL +APTRELA+QV    E   ++  GV V    GG +   +   L+ G HIVVGTP
Sbjct: 89  TPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQLSALRRGVHIVVGTP 148

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S L+ +VLDEADEML +GF +D+E IL  +P ++ + +FSAT+   
Sbjct: 149 GRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAEKHVALFSATMPSQ 208

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++K Y  DA+ + +        +I  R +  +   + +A+  IL     +  IVF  
Sbjct: 209 IRRISKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRILEVENFEGMIVFVR 268

Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T+      T++LAE L    F   A++G+++Q +R   +  ++ G+  + +ATDVAARG+
Sbjct: 269 TKNE----TEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDILVATDVAARGL 324

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P+  ++   +   +A  + 
Sbjct: 325 DVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPR--EKYLLKAIEKATKTT 382

Query: 368 VWE-PAPSVEAIRERDAQRI--LQDPLFLDSIQGDEKKMVDVL---LAKHD-PEKIAAGF 420
           + E   PSVE I   +A R+    D +       D     DV+   +  HD PE   A  
Sbjct: 383 LTEMQLPSVEDI---NATRLGRFDDRITTALASSDIDAFRDVIAHYVRNHDVPEADVAAA 439

Query: 421 LRIHRAG----LCAPEEITP------VSLVSGRD-----RFRDD---SRAFKVGGGSRDN 462
           L I   G    L  P+ + P           GRD       RDD   SR  K G G R  
Sbjct: 440 LAIVLQGDEPMLLGPDPVRPPRRERDSGAQGGRDFSDRGPRRDDRGGSRFDKGGSGERPA 499

Query: 463 FKGS----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-- 516
            +GS    + + ++VG + K E R ++  L    G+ RQ  G I ++ D + VE+ A   
Sbjct: 500 RRGSNVPMATYKIAVGRRHKVEPRQIVGALANEGGLGRQDFGHIDIRADHSLVELPATLP 559

Query: 517 --GVDLLRRTVKLDKGIQLKYLG--GEKPDFRGYKSSGFKS 553
               DLLR T    + I+L      G +PD + ++  G ++
Sbjct: 560 AGTWDLLRTTRISGQLIELTESSERGGRPDKKPHRKGGPRA 600


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 210/370 (56%), Gaps = 2/370 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64
            + + +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  
Sbjct: 9   QLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ 
Sbjct: 69  ENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQTLELKK 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L
Sbjct: 129 GVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKTRTTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT SP I  LA +Y +D V + +A  N   S ++ R   V+  D+  A+ ++L+   
Sbjct: 189 LFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKRYALRSLLKQRD 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A VF +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDV
Sbjct: 249 IRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVDLLVCTDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + +  
Sbjct: 309 AARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVGEIEKLI 368

Query: 364 NVSVVWEPAP 373
              +  EP P
Sbjct: 369 KKKINVEPCP 378


>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 553

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 164/570 (28%), Positives = 283/570 (49%), Gaps = 57/570 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  +L  KD++  AQTG+GKT AFG+ L   +  +
Sbjct: 10  NLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGIPLLEKIDPK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N +        A+ + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G
Sbjct: 70  NKKLQ------AVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKDG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL   P++R+ +M
Sbjct: 124 VQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSELPEERQTVM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +AK +QKD   V +  ++     +      V   ++   +  +L  +  
Sbjct: 184 FSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVMCRLLDMYAP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V      L    +    L G+L Q +R   +   R GR  + +ATDVA
Sbjct: 244 KLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRTDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R   
Sbjct: 304 ARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIA 417
             +V +P PS++ + E  A +IL   + +  D+   D  +++D++  K     +    +A
Sbjct: 364 TKIVPQPIPSIDDVTEIKADKILCQAEEILQDN---DMDRLIDIIERKVLEEDYTTLDLA 420

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDR--FRDDSRAFK----VGGGSRDNFKGS----- 466
           AG LR                ++ G D     +DSR  +    +G     N+        
Sbjct: 421 AGLLR----------------MIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRS 464

Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                       +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV 
Sbjct: 465 GGRGNRSGGDDMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVP 524

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
            +  D++ + +K D  I+ K +  EK + R
Sbjct: 525 REQADIVLQAMK-DARIKGKNIHIEKANRR 553


>gi|198274009|ref|ZP_03206541.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
 gi|198273087|gb|EDY97356.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
          Length = 629

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 273/533 (51%), Gaps = 36/533 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + Q I +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSQEIRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +  +N        P AL + PTREL +Q+  +L ++    T + +    GG S+ 
Sbjct: 60  PLIQKIDVKN------CVPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R ++ G HI+V TPGRL D +  K   +  ++ VV+DEADEML++GF D I  IL++
Sbjct: 114 SQIRSMKRGVHIIVATPGRLIDLMERKVARLETVRDVVMDEADEMLNMGFTDSINTILEN 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R  LMFSAT+SP I  +AK Y  DA  + I ++N    ++++ A +V   D+  A+
Sbjct: 174 VPNDRNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVNHVAYIVHAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRVVDFYPQIYGIVFCRTRKETQEIADKLIQDGYSADSLHGELSQAQRDLVMQKFRQRHL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNM 352
           ++ +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    +  
Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGK 353

Query: 353 QRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---- 407
            R  ER+ ++   VS +    P+ + I E+   +++ D   ++ ++  E+++   L    
Sbjct: 354 MREIERIIKKKFEVSEL----PTGKEICEQQLIKVIDD---IEKVKVSEEEIETFLPGIY 406

Query: 408 -----LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
                L+K D  K  ++  F R       APE   P +  + +     +SR        R
Sbjct: 407 RKLDWLSKEDLIKRVVSLEFNRFLDYYKNAPEIEQPKA--NDKKAETKESRKGDKEKVGR 464

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              KG +   L++G         ++ ++ R+    R  IG I +  + +F EV
Sbjct: 465 KAEKGYTRLFLNLGKTDGFYTNQIIDLVNRNLKKERIQIGRIDLMQNFSFFEV 517


>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 487

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFR---E 362
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++    E+L +   E
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIKRPLE 381

Query: 363 ANVSVVWEPA 372
               V+ +PA
Sbjct: 382 MQTLVLDKPA 391


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/426 (34%), Positives = 238/426 (55%), Gaps = 13/426 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q +  A+ + GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  ++++        AL ++PTRELA+Q   EL  L     V V    GG  + R+  
Sbjct: 61  NMIDTDSNQVQ------ALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +GAHIVVGTPGRL DHI    +N+S++K +VLDEADEML++GF +DIE IL + P +
Sbjct: 115 GLSHGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + IA++      ++   V V   ++ + + +IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AI+F  T+  V   T+ L    F    + G+L+QQ+RS  L+  ++G  ++ +
Sbjct: 235 DVQQPKLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356
           ATDVAARG+D+  ++ V + ++  + E+ +HR GRTGRAG  G SV  I     +  +  
Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEK 415
           E+L ++  + +  +P    EA+  R +         + +  G  + +++D L+ K+D + 
Sbjct: 355 EKLTKKRMLPL--KPPTREEALAGRMSVAADSVEAVIAATSGSVDSEVIDTLVEKYDAKT 412

Query: 416 IAAGFL 421
           +A   L
Sbjct: 413 LATALL 418


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 143/388 (36%), Positives = 218/388 (56%), Gaps = 11/388 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L E GY N T +Q A ++P +  KD++  AQTG+GKT AF L L + +  +       +
Sbjct: 19  SLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKIDMK------IN 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    YAK   G  V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  APQILVLAPTRELAVQVA-EAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L + +LKA+VLDEADEML +GF DDIE++L+  P   ++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  +  + V ++IAS       ID R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLEVENTEGIIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIERATNSRISPMK 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399
            PS E++ ER   R+ +     ++I GD
Sbjct: 372 VPSPESVAERRLSRLGEQ--IQETINGD 397


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 137/344 (39%), Positives = 200/344 (58%), Gaps = 10/344 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+  +G+   T +Q A +   L+++ DV+  AQTG+GKT AFGL +   +        P+
Sbjct: 19  AIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLPILEIV-------DPS 71

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              + AL +APTRELAVQ   E+  L     + +A   GG S+  + R L+ G H+VVGT
Sbjct: 72  LYQVQALILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQLRKLRRGVHVVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L++ HLK VVLDEADEMLD+GF +DIE +L  +P ++RML FSAT+  
Sbjct: 132 PGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTPAEKRMLCFSATMPQ 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ +  +A  V I  +    +  D   V V  SD+  A+  I+        I+FC
Sbjct: 192 PIQRLAERFMHNAQVVKIQQDTMTSNLTDQIYVEVKESDKLEALTRIIDMEENFYGIIFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L +  +    L G+LSQ++R   L  MR+    + +ATDVAARGID+ 
Sbjct: 252 RTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISIIVATDVAARGIDIS 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DL  VI+  L  +P+  +HR GRTGRAG+ G+++ FV P+  +R
Sbjct: 312 DLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKR 355


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 216/372 (58%), Gaps = 7/372 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL  RG   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N 
Sbjct: 125 PEIV-KALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNA 183

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P  L +APTRELA QV  E E+  +   +      GG  + ++ R+L  G  +
Sbjct: 184 KHGRGKNPQCLVLAPTRELARQV--EKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDV 241

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL   P KR+ +MFSA
Sbjct: 242 AVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSA 301

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           T+   I +L K Y  + + +++  ++ Q     I   ++      R + I  +++ HG  
Sbjct: 302 TMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKG 361

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R    LA+  ++  AL G++SQ +R   L   RDG   + +ATDVA
Sbjct: 362 GKCIVFTQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVA 420

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LVIH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + +E  
Sbjct: 421 ARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVG 480

Query: 365 VSVVWEPAPSVE 376
                 P+ +VE
Sbjct: 481 SRFNELPSIAVE 492


>gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
           2228]
          Length = 529

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 169/515 (32%), Positives = 267/515 (51%), Gaps = 32/515 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E G+   T +Q   +   L  +D++  AQTG+GKT AFG+ L   + +E
Sbjct: 10  NVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLLEEMDSE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           N        P A+ + PTRELA+QV  EL+ L   K  +      GG S+ R+ + L+ G
Sbjct: 70  N------KNPQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQIKALKKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ DHIR K L + ++   VLDEAD MLD+GF DDIE +L   P  R+ L 
Sbjct: 124 VQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPDDRQTLF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI  +I  L+K YQK++  + +A EN     ID     +  +D+  A+  I+     
Sbjct: 184 FSATIPKSIKRLSKKYQKNSKFLRVAHENLTVPSIDQYYYEIRRNDKLKALTRIMDLSNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVFC+TR  V      L    +   A+ G L+Q +R   ++  R G   V +ATDVA
Sbjct: 244 ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREA 363
           ARGID+ D+E V + +L  + +  +HR GRTGRAG+ G +  FV+ +++ +  + + +  
Sbjct: 304 ARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRD-IQKYT 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPE----KIAA 418
              +     PS + I+    ++  Q+   ++DS   D  K +D++    D +    +IAA
Sbjct: 363 KSKIKRAQIPSQDDIQAAKFEQFSQELSAYMDS--ADLGKYIDLIEELIDEQYSAIEIAA 420

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++  ++     E   P +  SG++        F   G       G     +++G K +
Sbjct: 421 ALMK--KSVDKKEEAQEPEN--SGQN--------FGDTGAE----PGMVRLFINIGKKDR 464

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              R ++  +   +G+    IGAI +  + TFVEV
Sbjct: 465 VSPRHIVGAIAGETGMPGGLIGAIDIYDNFTFVEV 499


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 219/375 (58%), Gaps = 8/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I  +L+++G   L  +Q+A+L P ++ KD+   A+TG+GKT+AFG+ +   ++  N
Sbjct: 74  ISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFN 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +      PLA+ +APTRELA QV +E    +     +  +C+ GGV +  + R+L+ G 
Sbjct: 134 KQHGKGRNPLAMVMAPTRELARQVQKEF---HDSAPSLDTICLYGGVPISSQMRELEYGV 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D ++   LN+S +K VVLDEAD+ML +GF DDIE IL   PKKR  + F
Sbjct: 191 DVVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCF 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASE-NRQHSD-IDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I  L + Y KD + +++  + +R+ +D I   ++   +  + + +  ++  H 
Sbjct: 251 SATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHA 310

Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+    R    +A++  +  AL G++SQ  R   L   R+G   + +ATD
Sbjct: 311 KGGKCIVFTETKRDADRLAYAMAKN-HKCEALHGDISQNVRERTLSGFREGHFNILVATD 369

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+P+++L+IH  L    E  +HRSGRTGRAG+KG ++ +  Q+  R+ + + R+
Sbjct: 370 VAARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQVKLIERD 429

Query: 363 ANVSVVWEPAPSVEA 377
                   P  +V+ 
Sbjct: 430 TGCRFSELPKIAVDG 444


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 208/372 (55%), Gaps = 13/372 (3%)

Query: 13  EALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           EAL ++G+ + T +Q+     +L+ D    DV+  AQTG+GKT AFGL +   L   +  
Sbjct: 17  EALEKKGFKHPTPIQKKAIPMLLDGDY---DVVGQAQTGTGKTAAFGLPIIEKLENTDKE 73

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   A+ + PTRELA+QV  EL  L     + +    GG  +  + R L+ G ++V
Sbjct: 74  VQ------AIILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQIRQLKKGVNVV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH++   L +  +K  VLDEADEMLD+GF DDIE IL  +   ++ML+FSAT
Sbjct: 128 VGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTNPDKKMLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK Y      +++ SEN     ++     V  SD+  A+  ++  +     I
Sbjct: 188 LPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCRVIDINKEFYGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC TRA V+     L+   +    L G+++Q +R   L   +  R ++ +ATDVAARGI
Sbjct: 248 VFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRTKILVATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ ++  NPE  +HR GRTGRAG++G ++  +  +  RR + + R A   + 
Sbjct: 308 DVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRRLKDIKRTAKTEIA 367

Query: 369 WEPAPSVEAIRE 380
            +  PS+E I+E
Sbjct: 368 KKDVPSIEEIKE 379


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 145/384 (37%), Positives = 217/384 (56%), Gaps = 23/384 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L L + +  E 
Sbjct: 13  LPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDIEE 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                   P  L +APTRELA+QV    E L+ K   GV +A   GG     + R L+ G
Sbjct: 73  ------KHPQMLVMAPTRELAIQVAEACE-LFTKNAKGVHIATLYGGQRYDIQLRALRQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN+S LK +VLDEADEML +GF DD+E ++   P + +  +
Sbjct: 126 AQVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K +  D   V I S  R + DI      V    ++ A++  L     
Sbjct: 186 FSATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 246 DGAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAE 357
           ARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+      N++R  +
Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNIERLMK 365

Query: 358 RLFREANVSVVWEPAPSVEAIRER 381
           +   E +V       P+ EA++ R
Sbjct: 366 KPIEEVDV-------PNHEALQAR 382


>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
 gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
          Length = 424

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 212/375 (56%), Gaps = 17/375 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           +AL+ RG  +L  VQ  +  P +  +DV+  A+TGSGKT+AF L +   LL EN +  P 
Sbjct: 2   DALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRPR 61

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP  L +APTRELA QV RE E +     + V    GGVS+  + R L+NG  +VVG
Sbjct: 62  KGRAPRCLVLAPTRELANQVSREFESVCPN--LKVDSFYGGVSISPQIRSLENGVDVVVG 119

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSAT 188
           TPGR+ D +    L + +++  VLDEAD+MLD+GF  D+E IL + P  K+R+ L+FSAT
Sbjct: 120 TPGRIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSAT 179

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG-- 243
           +   + ++AK YQ + + +++  E       D   +LV   D   + +A+  +L  +G  
Sbjct: 180 LPKWVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLAMYGNT 239

Query: 244 --AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F +T+A        + E      AL G++SQ +R  AL + RDG+    +AT
Sbjct: 240 AGGGKAIIFVNTKAKADEVNMAVNE-FASCDALHGDISQAQREKALALFRDGKYNCLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P ++LV H +L  + E  LHRSGRTGRAG+ G +V +  +   R    + R
Sbjct: 299 DVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLALILR 358

Query: 362 E---ANVSVVWEPAP 373
                N  +V  P P
Sbjct: 359 ATKVTNAELVGAPDP 373


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 160/518 (30%), Positives = 256/518 (49%), Gaps = 33/518 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120
           +   N           + + PTRELA+Q  +E+  L   K G+ V    GG  + R+ + 
Sbjct: 66  IDLNNRNLQ------IMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+GTPGR+ DHI  K L   ++K VVLDEADEMLD+GFRDDIE I+ S P+ R
Sbjct: 120 LKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  L+K YQ  A  + +        +I+ R + V  + +   +  ++ 
Sbjct: 180 QTILFSATMPKAIVELSKKYQTKAEFIKVVHRQLTVPNIEQRYIEVKENFKIEVLSRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +A
Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----K 415
           R     +     PS   + E  A   L+     ++I+ G   K +D +    D +     
Sbjct: 360 RYTKTKIKRAEIPSANDVEEFKANTFLEK--VKNTIEDGHLGKYIDYIENLLDEDFATID 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IA+  L++              +L   +     + +      G+     G     +++G 
Sbjct: 418 IASALLKM--------------ALGEEKKEEVIEIQEEIGETGAE---PGMVRLFINIGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             K +AR ++  +   +GI  + IG I +    TFVEV
Sbjct: 461 NHKIQARDVIGAIAGETGIPGKVIGKIDIYEKFTFVEV 498


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score =  238 bits (606), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 168/534 (31%), Positives = 267/534 (50%), Gaps = 48/534 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY N T +Q   +   L  +DVL  AQTG+GKT AF L + S +  E+      +
Sbjct: 15  ALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPILSNIDLEH------A 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P AL +APTRELA+QV    +  YA+   G  V    GG     + R L+ G HIVVGT
Sbjct: 69  EPQALVLAPTRELAIQVAEAFQR-YAEHLKGFHVVPIYGGQDYGIQLRMLRRGVHIVVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   LN++ LK +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT+ P
Sbjct: 128 PGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALFSATMPP 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ Y  +   V I ++      I  R  +V  S + + +  IL        ++F 
Sbjct: 188 VIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHKIDILTRILEVEPFDGMLIFV 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   AL+G++ Q +R   +  +++G   + IATDVAARG+D+ 
Sbjct: 248 RTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIVIATDVAARGLDVE 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + R  +  +    
Sbjct: 308 RISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYSIERATHSRIELME 367

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            P+ E I  +   +  Q     D+I  ++     K+++    +HD   ++A       A 
Sbjct: 368 LPTTEVINNKRIAKFNQR--ITDTIAAEDLGFFTKLIEQYCHEHD---VSAIEAAAALAS 422

Query: 428 LCAPEEITPVSLV--------------SGRDRFRDDSRAFKVG-------GGSRDNFKGS 466
           +   E  TP+ L               SGRDR  D  R+   G       G  +   KG 
Sbjct: 423 MVQGE--TPLLLSNKPEKSRSYEEREGSGRDRGSDRERSTDRGRSSDRDRGPVKKRTKGE 480

Query: 467 SW-------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++       + L VGS+   +A  ++  +    G++ +S+G I +    + VE+
Sbjct: 481 TYGDEGKERYRLEVGSEHGVKAGNILGAILNEVGLDPESVGHISINEGYSTVEL 534


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 225/389 (57%), Gaps = 12/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  ++
Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           ++ +        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  L
Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYITQQNAL 239

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I+G  L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+
Sbjct: 240 SRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQ 299

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT+   +  LA+ Y  + + +++  ++ +     I   A+    + +   + +++
Sbjct: 300 SMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLI 359

Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V 
Sbjct: 360 TVYAKGGKTIVFTQTKRDADEVSMALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVL 418

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  + 
Sbjct: 419 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKS 478

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387
           L R+      +   P++E + E  A++++
Sbjct: 479 LERDVGCKFEFISPPAIEEVLESSAEQVV 507


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 162/540 (30%), Positives = 271/540 (50%), Gaps = 38/540 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +ALS+ GY   +++Q   + P L  KD++  AQTG+GKT AF L + +     
Sbjct: 14  QLPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILA----- 68

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122
             R  P  S P AL +APTRELA+QV    +  YA+   G  V    GG     + R L+
Sbjct: 69  --RLDPKLSKPQALVLAPTRELAIQVAEAFQK-YARHSKGFKVLPIYGGSDYRTQLRQLE 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G H++VGTPGR+ DH+R   LN+S L  +VLDEADEML +GF DD+E+IL+ +P KR++
Sbjct: 126 RGVHVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQI 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+  AI  +AK +      + I  +   ++ I  R  ++    + +A+  IL   
Sbjct: 186 ALFSATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETE 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  TR +       L+   +   AL+G+++Q +R   ++ ++ G   + IATD
Sbjct: 246 DTDGVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++       +R    + R 
Sbjct: 306 VAARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERV 365

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KI 416
               +     P+ E + ++ A R        +++   +      L+  +  E      +I
Sbjct: 366 TGQKIESMELPTSEQVSDKRASRF--KARITETLDTRDLGAARELVESYQQEFGVPIIEI 423

Query: 417 AAGFLRIHRA---GLCAPEEITP-------VSLVSGRDRFRDDSRA--------FKVGGG 458
           AA  + +++     + A E + P            GRDR RD +R               
Sbjct: 424 AAALVVMNQGSAKAIPAAEPVKPSRERPARAERSPGRDRDRDQARGQDRERTPKRPKESA 483

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            RD   G   + + VG +   +   ++  +   + ++ + IG I+++ D +FV++  DG+
Sbjct: 484 PRDADVGMDRYRIEVGRQHGVKPGNIVGAIANEAEVDAEYIGRIQIEDDHSFVDLP-DGM 542


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/517 (33%), Positives = 275/517 (53%), Gaps = 19/517 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E  +AK   G+ V    GG     + R L+ G
Sbjct: 69  D--PTQRHPQMLVMAPTRELAIQVADACEQ-FAKNMKGIRVVTVYGGQRYDIQLRALKQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           + +VVGTPGR+ DHIR   L++S LK +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 126 SQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + + KD   V I +  R   DI+    LV    +++A++  L     
Sbjct: 186 FSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++   + ++  AL+G+++QQ R   L  +R GR  + +ATDVA
Sbjct: 246 DAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LVI+ ++    E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 306 ARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIENLIK 365

Query: 362 EANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +  ++ V  P   +  E  RE+   RI +  L    ++   + + D+  A  D E++AA 
Sbjct: 366 KP-INEVAIPNHEILMEKRREKFKARISKQ-LEHHDLEKYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSSWFSLSVGSK 476
            + +   +  L  P +    +  S R R R++    + G   R+N       + + +G +
Sbjct: 424 MMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIELGRE 483

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              E R ++  +     I+ + IG I++    + +E+
Sbjct: 484 DGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIEL 520


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK      V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + +  V V I S       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426
            PS E + ER   R+ +     ++I GD   M + +  L +    D + +AA  L+    
Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                ++  P+ L + ++R RD+   R+ +   GS  N +G        G + +  +R  
Sbjct: 426 ---QVQQERPLQLPAIQERVRDERNERSERSDRGSDRNDRG--------GERGERRSREP 474

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            PM   S G    S  A++  PDL       D
Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/517 (33%), Positives = 275/517 (53%), Gaps = 19/517 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E  +AK   G+ V    GG     + R L+ G
Sbjct: 69  D--PTQRHPQMLVMAPTRELAIQVADACEQ-FAKNMKGIRVVTVYGGQRYDIQLRALKQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           + +VVGTPGR+ DHIR   L++S LK +VLDEADEML +GF DD+E ++   P+  +  +
Sbjct: 126 SQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPETHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + + KD   V I +  R   DI+    LV    +++A++  L     
Sbjct: 186 FSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++   + ++  AL+G+++QQ R   L  +R GR  + +ATDVA
Sbjct: 246 DAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LVI+ ++    E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 306 ARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIENLIK 365

Query: 362 EANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +  ++ V  P   +  E  RE+   RI +  L    ++   + + D+  A  D E++AA 
Sbjct: 366 KP-INEVAIPNHEILMEKRREKFKARISKQ-LEHHDLEKYRELLEDLFTADQDHEELAAA 423

Query: 420 FLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSSWFSLSVGSK 476
            + +   +  L  P +    +  S R R R++    + G   R+N       + + +G +
Sbjct: 424 MMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIELGRE 483

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              E R ++  +     I+ + IG I++    + +E+
Sbjct: 484 DGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIEL 520


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/523 (32%), Positives = 265/523 (50%), Gaps = 17/523 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L +    L    
Sbjct: 19  PELL-HALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPV----LQRMT 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R      P+AL + PTRELAVQV         + G  V    GG  + R+ R LQ G  I
Sbjct: 74  RDGGGGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQGVDI 133

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR  DHI    L +  L+ VVLDEADEMLD+GF +DIE IL  +P+ R+ ++FSA
Sbjct: 134 VVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVLFSA 193

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244
           T+ P I  +A+ +  D VR+ +  E     +   +   A +V  + +  A+  +L     
Sbjct: 194 TMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHKPAALGRVLDVEAP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVFC TR  V + T+ L    ++  AL G + Q++R   +  +R G A + +ATDVA
Sbjct: 254 TAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R   
Sbjct: 314 ARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTK 373

Query: 365 VSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +  E  P++  +R R     +  L + L  D ++   + +V+ L  + D  ++A   +
Sbjct: 374 RRIPIEKVPTIADLRARRLELTRAALHESLLEDDLE-RFRVVVETLTDEFDIMEVALAAV 432

Query: 422 RI-HRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           ++ H A   A   +EI  V+L + R+       A +     R    GS    L VG+ + 
Sbjct: 433 KLAHEASGAADDEQEIPEVALRTEREERGRREPAGRQERRGRPAAGGSGMTRLFVGAGRS 492

Query: 479 AEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +  R   L+  +   S +  + IGAI +    + VEV     D
Sbjct: 493 SGIRPQDLVGAIAGESRLTGRDIGAIEIADRFSLVEVPDAAAD 535


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 214/375 (57%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + +  + +R    +
Sbjct: 20  ALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNAI--DPNR----N 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV  E    Y+K   G+ V    GG S+H++   L+ G  IVVGT
Sbjct: 74  VPQILVLAPTRELAVQVA-EAFGSYSKFMKGLHVLPIYGGQSMHQQLNALRRGPQIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L A+VLDEADEML +GF DDIE+IL+ +P++R++ +FSAT+  
Sbjct: 133 PGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQLALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y +  V ++IA+ +     I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 193 QIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 253 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ ++  + E  +HR GRTGRAGR GM++  +     R    + R     +    
Sbjct: 313 RIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKSRISPMN 372

Query: 372 APSVEAIRERDAQRI 386
            PS E + ER   R+
Sbjct: 373 VPSPETVAERRLSRL 387


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/343 (39%), Positives = 204/343 (59%), Gaps = 5/343 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66
           P+++ +AL+++GYV+ T +Q   +   L+  DV+ +AQTG+GKT  F L +   L+A  N
Sbjct: 32  PEIL-KALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQLLMAHAN 90

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL + PTRELA QV   ++     T +   V  GG+ +  +   L+ G 
Sbjct: 91  SSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALRGGV 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL DH++ K +N+S  + +V+DEAD MLD+GF  D++ I++  PK+R+ LMF
Sbjct: 151 EIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLMF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT SP I  LA  + KD V + +A  N    ++      V    + +A+  I+R  G K
Sbjct: 211 SATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFIIRERGLK 270

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+   SR  + L     +  A+ G+ SQ ER  AL+  ++G   V +ATDVAA
Sbjct: 271 QVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVATDVAA 330

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           RG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 331 RGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLF 373


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 231/419 (55%), Gaps = 27/419 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL+  GY   + +Q A +   L  +DVL +AQTG+GKT AF L + S L  +
Sbjct: 18  GLPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSHLDLK 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R      P AL +APTRELA+QV    + +     G  V    GG     +   L+ G
Sbjct: 78  LAR------PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRRG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF DD+E +L   P +R++ +
Sbjct: 132 VHVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVAL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  +A+ Y ++ V V IAS+    ++I  R   V+   + +A+  IL     
Sbjct: 192 FSATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRILEAEPF 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+A+       L        A++G++ QQ+R   +Q ++DGR  V +ATDVA
Sbjct: 252 DAMIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361
           ARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R
Sbjct: 312 ARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRAIERATR 371

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-------DE-KKMVDVLLAKHD 412
           +    +     P+V+A+ +R   R      F + I+G       DE +++VD    +HD
Sbjct: 372 QPIEEMRL---PTVQAVNDRRVAR------FFERIEGTLEAGGLDEYRELVDRYATEHD 421


>gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 176/550 (32%), Positives = 283/550 (51%), Gaps = 27/550 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   I ++L+E GYV  + +Q + +   L  +DVL  AQTGSGKT AF L L   L 
Sbjct: 10  FLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     AP  L +APTRELAVQV     ++     G+ V    GG     + R L+
Sbjct: 70  IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   PK+ + 
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+  AI  ++K + ++   + I S      DI  ++  +    + +A++  L   
Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ +++GR  + IATD
Sbjct: 243 DFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R 
Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362

Query: 363 ANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE--K 415
              S+     P VE + +R     A+++ Q    L+S   DE   ++D L +  D +   
Sbjct: 363 MKQSIPEVQLPKVELLCQRRLEQFAKKVQQQ---LESRDLDEYSALLDKLYSTDDLDIKT 419

Query: 416 IAAGFLRI---HRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +AA  L++    R  +  P+ I   S  L+   DR R+D+R  +     RD  K +  + 
Sbjct: 420 LAAALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYR 479

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG     E R ++  +     IN ++IG I++    + +E+    S D +    RT  
Sbjct: 480 IEVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRI 539

Query: 527 LDKGIQLKYL 536
           L+K I +K L
Sbjct: 540 LNKPINMKLL 549


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 222/387 (57%), Gaps = 10/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ ++
Sbjct: 95  LPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQD 154

Query: 67  D-RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           D R +     P  L +APTRELA QV +E++    K G V   C+ GGVS + ++  L  
Sbjct: 155 DGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTV---CVYGGVSYNVQQNALSR 211

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ D I G  L +  ++ +VLDEAD+ML +GF +D+E IL   P  R+ +
Sbjct: 212 GVDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSM 271

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240
           +FSAT+   +  L++ Y  + + +++  +  +     I   A+ +  + +   + +++  
Sbjct: 272 LFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDLITV 331

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V +A
Sbjct: 332 YAKGGKTIVFTRTKKDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R  + L 
Sbjct: 391 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLE 450

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387
           R+   +  +   PS+E + E  A+ ++
Sbjct: 451 RDVGCNFEFISPPSIEEVLESSAEHVI 477


>gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 595

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 181/586 (30%), Positives = 298/586 (50%), Gaps = 37/586 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L +    LA+ 
Sbjct: 8   LPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPI----LAKI 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YAK G+ +    GG     + R L+ G
Sbjct: 64  D--PNEKHPQLLVMAPTRELAIQVADACEQFMKYAK-GINIVTLYGGQRYDIQLRALKQG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN++ LKA+VLDEADEML +GF +D+E ++   P+  +  +
Sbjct: 121 AQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K + KD   + I +  +   DI      V    +++A++  L     
Sbjct: 181 FSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEVEDF 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +ATDVA
Sbjct: 241 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 301 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 360

Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + N+  V  P   V +A R +  +  +   L    ++   + + D+  A    E IAA  
Sbjct: 361 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDIAAAM 419

Query: 421 LRIHRAG---LCAPEEITP--------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           + + +     +  P+ +                 +    + R  + G G+         +
Sbjct: 420 MMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPM---DLY 476

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RT 524
            + VG     E R ++  +     IN + IG I++  D + +E+   G+  +LL+   +T
Sbjct: 477 RIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGKT 535

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFK 568
             L+K +++ ++G  K + RG  + G K +    +D   K  ++FK
Sbjct: 536 RVLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDNGFKGERKFK 580


>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 595

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 181/586 (30%), Positives = 298/586 (50%), Gaps = 37/586 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L +    LA+ 
Sbjct: 8   LPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPI----LAKI 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YAK G+ +    GG     + R L+ G
Sbjct: 64  D--PNEKHPQLLVMAPTRELAIQVADACEQFMKYAK-GINIVTLYGGQRYDIQLRALKQG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   LN++ LKA+VLDEADEML +GF +D+E ++   P+  +  +
Sbjct: 121 AQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPEHHQTAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K + KD   + I +  +   DI      V    +++A++  L     
Sbjct: 181 FSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRFLEVEDF 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +ATDVA
Sbjct: 241 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L +
Sbjct: 301 ARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNVEHLIK 360

Query: 362 EANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + N+  V  P   V +A R +  +  +   L    ++   + + D+  A    E IAA  
Sbjct: 361 K-NIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRQLLEDMFTADQSQEDIAAAM 419

Query: 421 LRIHRAG---LCAPEEITP--------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           + + +     +  P+ +                 +    + R  + G G+         +
Sbjct: 420 MMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPM---DLY 476

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV--DLLR---RT 524
            + VG     E R ++  +     IN + IG I++  D + +E+   G+  +LL+   +T
Sbjct: 477 RIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELP-QGMPKELLQQFGKT 535

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKRFK 568
             L+K +++ ++G  K + RG  + G K +    +D   K  ++FK
Sbjct: 536 RVLNKQMRMSFIGEAKGE-RGGDNFGGKRRGGRFEDNGFKGERKFK 580


>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 643

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 219/372 (58%), Gaps = 8/372 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+++ G+++ + +Q   + P L  +DV+  AQTG+GKT AFG+  A  L+   D
Sbjct: 40  PELL-QAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIP-ALDLIDVQD 97

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R     +   L + PTRELA+QV  E++ L   K G+ +    GG S+ R+ R L++G H
Sbjct: 98  R-----SVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGVH 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ DH+    L ++++K ++LDEADEMLD+GFR+DIE IL+  P++R+ ++FS
Sbjct: 153 IVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  + + +QKD V V +  +   + +I+     V    +   +  ++  +  K 
Sbjct: 213 ATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLKL 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC+T+  V    + L    +Q   L G+L Q +R+N +   R G   + +ATDVAAR
Sbjct: 273 LLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D++ VI+ ++  + E  +HR GRTGRAG+ G +   + ++ + R   +     V 
Sbjct: 333 GIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKVK 392

Query: 367 VVWEPAPSVEAI 378
           V     PS E I
Sbjct: 393 VEKGVIPSFEDI 404


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK      V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + +  V V I S       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426
            PS E + ER   R+ +     ++I GD   M + +  L +    D + +AA  L+    
Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                ++  P+ L + ++R RD+   R+ +   GS  N +G        G + +  +R  
Sbjct: 426 ---QVQQERPLQLPAIQERVRDERNERSERSDRGSDRNDRG--------GERGERRSREP 474

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            PM   S G    S  A++  PDL       D
Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501


>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp.  (strain
           APS)
 gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 176/550 (32%), Positives = 283/550 (51%), Gaps = 27/550 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   I ++L+E GYV  + +Q + +   L  +DVL  AQTGSGKT AF L L   L 
Sbjct: 10  FLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     AP  L +APTRELAVQV     ++     G+ V    GG     + R L+
Sbjct: 70  IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   PK+ + 
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+  AI  ++K + ++   + I S      DI  ++  +    + +A++  L   
Sbjct: 184 ALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ +++GR  + IATD
Sbjct: 243 DFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R 
Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362

Query: 363 ANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE--K 415
              S+     P VE + +R     A+++ Q    L+S   DE   ++D L +  D +   
Sbjct: 363 MKQSIPEVQLPKVELLCQRRLEQFAKKVQQQ---LESRDLDEYSALLDKLYSTDDLDIKT 419

Query: 416 IAAGFLRI---HRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +AA  L++    R  +  P+ I   S  L+   DR R+D+R  +     RD  K +  + 
Sbjct: 420 LAAALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYR 479

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG     E R ++  +     IN ++IG I++    + +E+    S D +    RT  
Sbjct: 480 IEVGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRI 539

Query: 527 LDKGIQLKYL 536
           L+K I +K L
Sbjct: 540 LNKPINMKLL 549


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 165/525 (31%), Positives = 274/525 (52%), Gaps = 27/525 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++I  P  +  A+ E G+   +++Q   + P L  +DV+  AQTG+GKT AFGL L + 
Sbjct: 86  FDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLAA 145

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
           +              AL +APTRELA+QV   +  +  +  G+ V    GG     + R 
Sbjct: 146 IDPSLREVQ------ALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQERA 199

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA +VVGTPGR+ DH+R   L +  ++  VLDEADEML +GF +D+E IL  SP  R
Sbjct: 200 LARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDTR 259

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+  AI  +A+ + +D VRV+++ ++     +     +V    R  A+  +L 
Sbjct: 260 QVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVLA 319

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A+ AIVF  TRA+       L        ++SG++ Q+ER   ++ +RDG  +V +A
Sbjct: 320 TSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLVA 379

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           TDVAARG+D+  + LV++ ++    E+ +HR GRTGRAGR G ++ F+ P   +RRA + 
Sbjct: 380 TDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPH--ERRALKN 437

Query: 360 FREANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKH--DP 413
              A    + E   P+P  +  + R A ++ Q P  ++  + +  ++++   +A+H  DP
Sbjct: 438 IERATKQTLAEAVIPSPR-DVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDP 496

Query: 414 EKIAA--GFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            ++AA  G + +   G       EE T   L   R    D  R  +    +    +G + 
Sbjct: 497 LELAAALGAMSVGDEGPGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAATE---RGYTS 553

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + + VG    A    ++  +    G++ + IG I++ P    V++
Sbjct: 554 YKVGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQI 598


>gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 644

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 226/413 (54%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +   N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP IT ++K Y  +A  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEITRISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +
Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFM 402


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 167/512 (32%), Positives = 273/512 (53%), Gaps = 34/512 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLL 63
           N+ +    A++E+G+ N T VQE ++ P L  +EK+++V A+TG+GKT AFG+ L    L
Sbjct: 7   NLSEKTLRAINEKGFENPTPVQEKVI-PTLLKKEKNLIVQAKTGTGKTAAFGIPLIE--L 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN  +  A     + + PTRELA+QV  E+  L  K   ++ +  GG S+ R+   L+ 
Sbjct: 64  LENKGYVQA-----IILTPTRELALQVSEEINSLKRKKLKILPIY-GGQSIQRQIDHLRK 117

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DH+    +++S +   +LDEADEMLD+GF DD+E IL S+   +  L
Sbjct: 118 GVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDKFFL 177

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSATI   I  LAK Y K+   + I  +    +  +   + +  SD+  A+  I+    
Sbjct: 178 MFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIIDMEE 237

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VFC T+  V   +  L E  +   AL G+ SQ +R   L+  R+ +  + +ATDV
Sbjct: 238 EFYGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNILVATDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362
           AARGID+  L  VI+  +  NPE+ +HR GRTGRAG++G+++ FV P+   R+  R+ + 
Sbjct: 298 AARGIDITGLTHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPREY-RQLFRIKKF 356

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKIAAGFL 421
           +N  +     PSV+ I +  A++I +  +  +S + D   ++   LL +   E++ A  L
Sbjct: 357 SNAKIKEGKVPSVDQIIKTKAKKIKKQVVENNSKKHDIYYELAKELLNELPAEEVVATLL 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            +    L  PE    +S +S +    +  R F                 +++G +     
Sbjct: 417 SMGYKSL-NPESYNNISQISSKK--EEVVRLF-----------------IALGKQSGINK 456

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + L+  + +++GI+ + I  I V    +F+ V
Sbjct: 457 KQLIDYIVKNTGISSKVISDITVLDKFSFITV 488


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 164/526 (31%), Positives = 273/526 (51%), Gaps = 32/526 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I +A+++ G+   + +Q   +   +  +DV+  AQTG+GKT AF L + S L  + 
Sbjct: 62  LPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQLDPQ- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                A  P AL +APTRELA+QV    +  +A+T  G+ V    GG +   +   L+ G
Sbjct: 121 -----ARHPQALVLAPTRELALQVADAFQS-FAETLKGIEVLPIYGGQAYGIQLSGLRRG 174

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+S+P ++++ +
Sbjct: 175 AQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRKQVAL 234

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL     
Sbjct: 235 FSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILEVITY 294

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+       + L +  +   A++G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 295 DAIIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVA 354

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 355 ARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTN 414

Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGD------EKKMVDVLLAKHDPE 414
             +     PSV+ +    +E+ AQ I Q    +D+ Q D       K   D  +A  D  
Sbjct: 415 ARLEEMDLPSVDEVNEKRKEKFAQAITQS---MDNKQADFFRNLVRKYSEDNNVAMDD-- 469

Query: 415 KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----S 467
            IAA    +H+ G   L   + +            R   R FK GG +R   K       
Sbjct: 470 -IAAALAVMHQGGKNFLLEDKPLPKPKKDRRDRDDRKRDRDFKGGGKNRGGSKRPDGDFE 528

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + L VG +Q      ++  +    G++ +  G I +    T V++
Sbjct: 529 TYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDL 574


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 140/347 (40%), Positives = 205/347 (59%), Gaps = 13/347 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  GY ++T VQ   L   L+ +DV+  A+TGSGKT AFG+ L  T+   N RF   
Sbjct: 17  EALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLLQTI---NPRFFGV 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVG 130
            A   L + PTRELA QV  EL  L ++   +  V +C GG     +   L++GAHIVVG
Sbjct: 74  QA---LVLCPTRELAEQVSGELRRLASRMANIKLVTLC-GGKPFGPQVGSLEHGAHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH++ K L++  LK +VLDEAD MLD+GF D +E I+  +PK R+ L+FSAT  
Sbjct: 130 TPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPKSRQTLLFSATYP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  ++ + Q+    V +  E+  H+D  I+     V   +R+  ++ +  ++   NA+
Sbjct: 190 ENIRKMSASIQRSPTMVTV-DEDVGHADEVIEQLFFEVQKHERNTTLLALFEHYRPANAV 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+       K+L E+  +  A+ G+L Q+ER   L    +    V +ATDVAARG+
Sbjct: 249 VFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCPVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           D+  L +VI+ EL  +P+  +HR GRTGRAG  G+++  VIP   QR
Sbjct: 309 DIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQR 355


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 156/505 (30%), Positives = 259/505 (51%), Gaps = 24/505 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +QE  +   L   D +  AQTG+GKT+AFG  L S +   +DRF   
Sbjct: 17  KAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSKIKPIDDRF--- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ ++PTRELA+Q+  E+  +    G  +    GG  + ++ R ++ G  IVVGTP
Sbjct: 74  --PQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSIKKGVDIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +R K L   ++K VVLDEADEML++GF +DIE IL+     R+ ++FSAT+   
Sbjct: 132 GRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQTILFSATMPAG 191

Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  +A+NY  D  + V + S+    + +      V   DR   +  ++     K  I+FC
Sbjct: 192 IKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLIDVANIKTGIIFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ SV   T+ + +  + V A+ G+L+Q  R N L+  + G     +ATDVAARGID+ 
Sbjct: 252 RTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVATDVAARGIDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++  VI+ EL  + E+ +HR GRTGRA ++G++  +I        +++ R    ++    
Sbjct: 312 NVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIERVTKSTITKVN 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA---AGFLRIHRAGL 428
            P+++ I E     ++ D    D I     K    L+ + DP  ++   A  L I     
Sbjct: 372 VPTLQEIFEARIGALISD--VEDVILAGNHKRFKQLVNEIDPTMLSDFTAALLYI----- 424

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
              E++       G D  RD  +        R+N K  +   L+VG+  + +   ++   
Sbjct: 425 SYQEQL-------GYDYQRDVIQEINSKKYDRNN-KNYTRLFLTVGTMDRVKVPQIIDFF 476

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
             ++GI +  IG I ++   TFV++
Sbjct: 477 ITNAGIRKDDIGDIDLKRKFTFVDI 501


>gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANSSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQRQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y  +   + +A  N   +++      +A  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 463

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 135/341 (39%), Positives = 200/341 (58%), Gaps = 11/341 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  GY N+T +QEA L   L  +D++  A+TGSGKT+AFGL L   L  +  R    
Sbjct: 19  ETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLALHVKQMRIQ-- 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               ++ + PTRELA QV  EL  L  +     +V +C GG     +   L++GAHIVVG
Sbjct: 77  ----SVVLCPTRELAEQVSAELRKLASFTHNIKIVTLC-GGARFVPQCISLEHGAHIVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+  H++ K +N  H+K +VLDEAD MLD+GF +DIE I+   PK+R+ L+FSAT  
Sbjct: 132 TPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKERQTLLFSATFP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  + +  QK+A+++++  E +     I   A+ V   +++  +   L     K+ I+
Sbjct: 192 REIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFLLNEMPKSVII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+ +VS     L E  F  + L G+L Q  R   L +  +G A++ +ATD+AARG+D
Sbjct: 252 FCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILVATDLAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           + D+E+VI+ EL    E   HR GRTGR G++G ++ FV P
Sbjct: 312 IKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTP 352


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 276/533 (51%), Gaps = 29/533 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE +P  +   +AL E  +++ T +Q  ++   ++  DV+  AQTG+GKT AFG+ +  
Sbjct: 4   LFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPII- 62

Query: 61  TLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRER 118
                 ++  P      +L + PTREL +QV  EL+  L     + +AV  GG S  ++ 
Sbjct: 63  ------EKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H+++ TPGR  DH+    +++S LK + LDEADEML +GF++ +E IL   P+
Sbjct: 117 RALEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  +A  YQKD   + +  +N   + I+    LV   D+   +V +
Sbjct: 177 ERQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ 
Sbjct: 237 LDLKKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D+++VI+ +L    E  +HR GRTGRAG+KG++  +I      + ++
Sbjct: 297 IATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKK 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDP 413
           L       +     PSV++I+ ++A+ +  +   L+ I+ + +     ++   LL     
Sbjct: 357 LEYYLKEKITLLDIPSVQSIKLQNAKDL--EKKLLNIIEKNNEDATPNQLAQKLLETFSS 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGG----GSRDNFKG 465
           E+I  G L+          +I P  + +     R RF  +SR    G     G++   + 
Sbjct: 415 EQIIQGLLKKFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYGSNNSYGNKSYQRA 474

Query: 466 SSWF---SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           +S F    +++G K       L+ +L     I  ++IG I+     T  EV++
Sbjct: 475 NSNFIEVVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEVAS 527


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 224/391 (57%), Gaps = 13/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I EA+ + G+   + +Q   +   L  +DV+  AQTG+GKT AF L + + +   N
Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH++   L+ISHL  +VLDEADEML++GF++D+E IL+ +P K+++ +F
Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L++ Y  D   V + +E R +++I  R + VA  ++ +A+  IL     +
Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +ATDVAA
Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           ++     P+V+ + E   ++      F DSI
Sbjct: 471 TLEEMQLPTVDEVNESRKEK------FADSI 495


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 274/522 (52%), Gaps = 30/522 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + I  A+SE GY   T +Q   +   +  KDVL  + TG+GKT AFG+  A  ++  
Sbjct: 8   HISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIP-AIEMVQP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            D+++ A     L I PTREL  QV  EL ++   K GV +    GG  + R+ + L+ G
Sbjct: 67  QDKYANA-----LIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQIQLLKRG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR--RM 182
             IVVGTPGR+ DH+R + L +S ++ V+LDEADEML++GF++DIE IL   P +R  + 
Sbjct: 122 CGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMPSERSYQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT    I  +AK +Q D V V I S  R    ++     V    + NA+  +L ++
Sbjct: 182 ILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANALRVLLNHY 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F +T+  V      L +H  +  AL G++ Q+ RS  ++  R G   + IATD
Sbjct: 242 DPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSMPILIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-RAERLFR 361
           VAARGID+ D++LVI+ ++  + E  +HR GRTGRAG+KG+++ +I    QR   + + R
Sbjct: 302 VAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRSELKNIMR 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEK-KMVDVLLAKHDPEKIAAG 419
               ++     P+   ++  + +  ++   L  D    DE  ++ + LLA+         
Sbjct: 362 YTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELLAE--------- 412

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                  G+     I+ +  ++ ++   D      V   + D F+  +    S+G +   
Sbjct: 413 -------GIAVENIISALISMTYKNEIIDIEEEEHVKRYAAD-FEAVT-LKFSIGKQDGV 463

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
           +   ++  +    GI+ ++IG I V+ + + V+V A  VDL+
Sbjct: 464 KTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLV 505


>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
 gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
          Length = 512

 Score =  236 bits (603), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 201/349 (57%), Gaps = 7/349 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q +  A+ + GYV  T +QE  +   +  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  EN          AL ++PTRELA+Q   EL  L     V V    GG  + R+  
Sbjct: 61  EMIDNENKDVQ------ALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +GAHIVVGTPGRL DHIR   +N+SH+K +VLDEADEML++GF +DIE IL + P +
Sbjct: 115 GLNHGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + IA++      +D   V V   ++ + +  IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEKFDVLTRIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+F  T+  V   T+ L    F+   + G+L+QQ+R+  L+  ++   ++ +
Sbjct: 235 DVQQPELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G SV  +
Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFV 343


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 136/391 (34%), Positives = 224/391 (57%), Gaps = 13/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I EA+ + G+   + +Q   +   L  +DV+  AQTG+GKT AF L + + +   N
Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH++   L+ISHL  +VLDEADEML++GF++D+E IL+ +P K+++ +F
Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L++ Y  D   V + +E R +++I  R + VA  ++ +A+  IL     +
Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +ATDVAA
Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           ++     P+V+ + E   ++      F DSI
Sbjct: 471 TLEEMQLPTVDEVNESRKEK------FADSI 495


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score =  236 bits (603), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 232/413 (56%), Gaps = 9/413 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 62  LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQI---- 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              + A  P AL +APTRELA+QV    + +  +  GV V    GG +   +   L+ GA
Sbjct: 118 --DTKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL      
Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +     PSV+ + E+  ++  Q     +S+   +      L+ K+  +  AA
Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAA 466


>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 583

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 156/522 (29%), Positives = 261/522 (50%), Gaps = 33/522 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+++ G+   + +Q   +   L  KDV   AQTG+GKT AFG+ L   + +E
Sbjct: 10  NISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLENIDSE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124
           ++         A+ + PTRELA+QV  EL  L      + V    GG  + R+ + LQ G
Sbjct: 70  DNNLQ------AIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DHI    L+++++K V+LDEADEMLD+GFR+DIE+IL+  P +R+ L+
Sbjct: 124 VQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ YQ +   V +        D++ +   V    +   +  +L  H  
Sbjct: 184 FSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDF 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++VFC+T+  V +    L    +    L G+L+Q +R   +   + G   + +ATDVA
Sbjct: 244 DLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +E V + ++ ++ E  +HR GRTGRAG+ G +   +      +   + R A 
Sbjct: 304 ARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAK 363

Query: 365 VSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +   P P+   VE +++ +    L++ +  + I  +   +  ++   ++   IAA  L
Sbjct: 364 TKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSIDIAATLL 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +    G+                   DD R  +   G  +  +G   F +SVG KQ    
Sbjct: 424 K----GVI------------------DDKRYKEEEFGDTEAHEGFVRFFMSVGRKQNITI 461

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR 522
             ++  +   +G+    IG I +  + +FVE+  A+  D  R
Sbjct: 462 SVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYR 503


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 205/348 (58%), Gaps = 2/348 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72
           AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L +L           SPA
Sbjct: 16  ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPA 75

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  IVV T
Sbjct: 76  MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSAT SP
Sbjct: 136 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+++      V +A++N  +++++   + V    + N +  ++        IVFC
Sbjct: 196 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVFC 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDVAARG+D+ 
Sbjct: 256 KTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIA 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E +
Sbjct: 316 ELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFESI 363


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRSRGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 161/532 (30%), Positives = 273/532 (51%), Gaps = 44/532 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L         +  P  
Sbjct: 45  AVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQ-------KVDPKV 97

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             L A+ + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G  +++GT
Sbjct: 98  KKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSLKDGTQVIIGT 157

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K + + ++  VVLDEADEML++GF +D+E IL   P++R+ LMFSAT+ P
Sbjct: 158 PGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMPP 217

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ +QK+ V V +  +      +      V   ++   +  +L  +  K +IVFC
Sbjct: 218 AIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPKNKVEVMCRLLDLYAPKLSIVFC 277

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAARGID+ 
Sbjct: 278 NTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILVATDVAARGIDVG 337

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R     ++ + 
Sbjct: 338 DVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRDIQRYCKTRIIPQA 397

Query: 372 APSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK-----IAAGFLRIH 424
            PS+  I E   ++IL   + +  DS   D  KMV ++  K   E+     +AA  L+++
Sbjct: 398 IPSLNDITEIKVEKILDQVEEVMNDS---DLSKMVGIIEKKLMEEEYTSLDLAAALLKMN 454

Query: 425 RAGLCAPEEIT----PVSLVSGRDRF-RDDSRA-FKVGGGSRDNFKGSS----------- 467
                  E+I     P   +   DR+ RD +R   +  GG+R   KG++           
Sbjct: 455 MGE--DSEDIIECSEPARSLDDLDRYGRDFNRGRGRTTGGNRSRRKGATDRAAIDYIVEG 512

Query: 468 ------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                    +++G  Q+     ++  +   SG+  + +G+I +    TFV+V
Sbjct: 513 DGDDMARLFINIGKAQRVTPGDILGAVAGESGMPGRLVGSIDMYDGYTFVDV 564


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score =  236 bits (602), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 202/367 (55%), Gaps = 17/367 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY+  T +Q   +   L  KDVL  AQTG+GKT AFGL L S L A+       
Sbjct: 20  QAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSRLDAD------L 73

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L + PTRELA+QV   L ++     G+ VA   GG S   + RDL  G  IVVGT
Sbjct: 74  KQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARGPQIVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI+   L + +LKA VLDEADEML++GF +DIE+IL+  P + +M  FSAT+  
Sbjct: 134 PGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAFFSATMPA 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +   +  D + V IA +      I  ++  V    +   +  I         IVF 
Sbjct: 194 PIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDYDAMIVFV 253

Query: 252 STRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            TR      T VLAEHL    F+  AL+G++ QQ+R   ++ +++GR  + IATDV ARG
Sbjct: 254 RTRND----TLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVVARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANV 365
           +D+P +  VI+ +L  + E+ +HR GRTGRAGR+G ++        R   RL R  E  +
Sbjct: 310 LDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITEGKI 369

Query: 366 SVVWEPA 372
            V   P 
Sbjct: 370 EVFDMPT 376


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 204/346 (58%), Gaps = 2/346 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72
           AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L +L           SPA
Sbjct: 16  ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSSTSPA 75

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  IVV T
Sbjct: 76  MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSAT SP
Sbjct: 136 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+++      V +A++N  +++++   + V    + N +  ++        IVFC
Sbjct: 196 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLERLIVDLHMNQVIVFC 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDVAARG+D+ 
Sbjct: 256 KTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDIA 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 316 ELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 216/359 (60%), Gaps = 11/359 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L+ N+
Sbjct: 95  PRIV-EKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHNE 153

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           +      PLA+ +APTRELA QV +E    + ++  +  +C+ GGV ++++ R L  G  
Sbjct: 154 KNGNGRNPLAIVLAPTRELARQVEKE----FRESAPLDTLCVYGGVPINQQMRVLNYGVD 209

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I++  P+ R+ ++FS
Sbjct: 210 IVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFS 269

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  ++  Y  D V +++  ++ Q     I   ++      + + +  +++ H  
Sbjct: 270 ATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHAN 329

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R   V+    +   AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 330 GGKCIVFTQTKRDADRLAYVMGRS-YPCQALHGDISQNQRERTLSGFRDGRFNILVATDV 388

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P+++LV+H E+ +  E  +HRSGRT RAG+KG ++ +     Q RA R+  +
Sbjct: 389 AARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYE-QTRAVRVIEQ 446


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 205/353 (58%), Gaps = 9/353 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+  +T +QE  +   +   DV+  A TG+GKT AFG+ +A  +L EN    
Sbjct: 12  IHKAVERMGFAEMTEIQEKTIPVMMAGYDVIAKAPTGTGKTCAFGIPVAEHILPEN---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P A+ +APTRELA Q+ +ELE L Y    V VA   GG ++ ++ + L  G  IVV
Sbjct: 68  --KYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRLAEGCQIVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFSATI
Sbjct: 126 ATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKSLSMFSATI 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  +   YQ +A  + +  +      I    +  +  ++ + +  I+     K  +V
Sbjct: 186 SREVMDIGWLYQHNAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGENYKRVMV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAARGID
Sbjct: 246 FCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAILVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           + D++ VI+ ++ S  E+  HR GRTGRA ++G+S +F +P+  ++R + L R
Sbjct: 306 VSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 229/423 (54%), Gaps = 13/423 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+ E G+   + +Q A +   L  +D++  AQTG+GKT AFG+ L   +   
Sbjct: 19  NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKM--- 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
               +    P A+ + PTRELA+QV  E+  L AK   G  V    GG ++  + R L+ 
Sbjct: 76  ---DTKVKKPQAMILCPTRELAIQVADEIRKL-AKFMHGAKVLPIYGGQNITNQIRSLKT 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA+I+VGTPGR+ DH+R   L +  LK VVLDEADEML++GFR+DIE IL   P++R+ L
Sbjct: 132 GANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTL 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  + K YQKD+  + +  +     +I+     V    +   +  +L  H 
Sbjct: 192 LFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHS 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +IVFC+T+  V   T  L    +    + G+L Q +R   ++  R GR  + +ATDV
Sbjct: 252 PKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D++ V + +L  + E  +HR GRTGRAGR G +   +      +   + R  
Sbjct: 312 AARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYC 371

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHD--PEKIAAG 419
              +   P PS+  ++   A++ L++   L      +K   M+D  + + D    +IAA 
Sbjct: 372 KTKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAA 431

Query: 420 FLR 422
           FL+
Sbjct: 432 FLK 434


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 214/388 (55%), Gaps = 12/388 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK      V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + ++ V V I S       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGD 399
            PS E + ER   R+ +     ++I GD
Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGD 397


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 262/512 (51%), Gaps = 39/512 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L + + ++       +
Sbjct: 20  ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNKVTSQ-------T 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELAVQV       YAK      V    GG S+ ++   L+ G  ++VGT
Sbjct: 73  TPQILVLAPTRELAVQVAEAFSS-YAKFMKNFHVLPIYGGQSMQQQLNALKRGPQVIVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +FSAT+  
Sbjct: 132 PGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALFSATMPE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  + ++ V V I S       I+ R V V+  ++  A+V +L     +  I+F 
Sbjct: 192 QIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTEGVIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAARG+D+ 
Sbjct: 252 RTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N  +    
Sbjct: 312 RIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNSRISPMK 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH---DPEKIAAGFLRIHRA 426
            PS E + ER   R+ +     ++I GD   M + +  L +    D + +AA  L+    
Sbjct: 372 IPSPETVAERRLSRLGEQ--LAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ---- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                ++  P+ L + ++R RD+   R  +   GS  N +G        G + +  +R  
Sbjct: 426 ---QVQQERPLQLPAIQERVRDERSERTERSDRGSDRNDRG--------GERGERRSREP 474

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            PM   S G    S  A++  PDL       D
Sbjct: 475 RPMPA-SLG----SAEALKDNPDLKMCRYVID 501


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 169/520 (32%), Positives = 266/520 (51%), Gaps = 34/520 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE++   + I +A+ E G+   T +Q   +   L   DV+  AQTG+GKT AFG+ + 
Sbjct: 5   KTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPIL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N R+    A  AL I PTRELA+QV  E+  L     V      GG S+ R+  
Sbjct: 65  EKL---NPRYR---AVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIG 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL DHI    L + HLK +VLDEADEMLD+GF DDIE I+  +P+ 
Sbjct: 119 ALKRGVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPET 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  LA+ Y K+   V ++ +      I+     V    +  ++  +L
Sbjct: 179 RQTLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC T+  V      L    +Q   L G+L+Q +R+  ++  ++G+    +
Sbjct: 239 ETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358
           ATDVAARG+D+ ++  VI+ ++  +PE  +HR GRTGRAGR G ++ F++P+  + R  R
Sbjct: 299 ATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPE--EYRQLR 356

Query: 359 LFRE-ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP 413
           L  +     +  +  PS+  I ER  Q++       ++I G +    + +V  L A ++ 
Sbjct: 357 LIEKIIGARIARKNLPSIADIFER--QKVQMIDKVANTINGGQLDIYRDIVQELAADYNL 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IA+  L++        +EI              D   F   G       G     +++
Sbjct: 415 IDIASAALKLALDLELPAKEI------------EVDEADFGETGAR----PGMVRLFMNI 458

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G +++     ++ ++   + I  +SIGAIR+    +FVEV
Sbjct: 459 GRQEEMTPPEIIKLIAEEAAIPGKSIGAIRIFDRFSFVEV 498


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/362 (37%), Positives = 211/362 (58%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G++ +T +QEA L   L  +DV   A+TGSGKT AFGL L   + A+N  F+  S 
Sbjct: 37  LNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLLQHIDAKN--FNTQS- 93

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  Y     ++ +C GGV    +R  L + AH++V TP
Sbjct: 94  ---LVLCPTRELADQVANELRRLARYIPNLKILTLC-GGVPFSVQRDSLAHAAHVIVATP 149

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + +N+ HL+ +VLDEAD MLD+GF D+I+ I+  +P +R+ L+FSAT   +
Sbjct: 150 GRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQTLLFSATWPES 209

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q +   + I S N +  D++ +   VA  D+   +  +L      + ++FC+
Sbjct: 210 IADISQRIQNNPQTIEINSVN-ELPDVEQQFYEVARHDKIELLQKLLSRDQPASCVIFCN 268

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +    V+ L G++ Q++R   L    +G +RV +ATDVA+RG+D+  
Sbjct: 269 TKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVASRGLDIKA 328

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+VI+ ELS +PE  +HR GRT RAG+ G+++ +      +RA  L    N+ + W P 
Sbjct: 329 LEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANALEEMLNMKLNWLPE 388

Query: 373 PS 374
           P+
Sbjct: 389 PT 390


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 202/352 (57%), Gaps = 7/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLSNKNIQ------ALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I ++K +VLDEADEML++GF DDIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    ++   L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV ++  N
Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPN 346


>gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
 gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
          Length = 644

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 271/538 (50%), Gaps = 42/538 (7%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +   N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++K Y  +A  + I  +N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +       
Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFMPDIYRKL 409

Query: 408 --LAKHDPEKIAAG-----FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
             L+K D  K         FL  +R      EEI    + +G +R   +++  + GG +R
Sbjct: 410 DWLSKEDLIKRMVSHEFNRFLDYYR----NREEI---EIATGSER---NTKGSERGGSTR 459

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
               G     +++G         L+ +L  S+   R  +G I +    +F EV    V
Sbjct: 460 QAAPGFKRLFINLGKMDNFFPNELISLL-NSNTRGRIELGRIDLMQKFSFFEVEEKEV 516


>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
 gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group]
          Length = 723

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 221/387 (57%), Gaps = 10/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ E+
Sbjct: 76  LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 135

Query: 67  DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           D  S      P  L +APTRELA QV +E++    K   +  VC+ GGVS + ++  L  
Sbjct: 136 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSR 192

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ +
Sbjct: 193 GVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 252

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240
           +FSAT+   +  L++ Y  + + +++  +  +     I   A+ +  + +   + +++  
Sbjct: 253 LFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITV 312

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V +A
Sbjct: 313 YAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 371

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L 
Sbjct: 372 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 431

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387
           R+      +   P++E + E  A+ ++
Sbjct: 432 RDVGCRFDFISPPAIEDVLESSAEHVI 458


>gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 623

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 179/582 (30%), Positives = 284/582 (48%), Gaps = 48/582 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L A+        
Sbjct: 21  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLQAD------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++      V V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   V+I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374

Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422
           P+ E + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L+
Sbjct: 375 PNAELLGERRLAKFAAKVQQ------QLESRDLDMYRALLAKLQPEEELDMETLAAALLK 428

Query: 423 I---HRAGLCAPEEITPVSLVSGRDRFRD-----DSRAFKVGGGSRD---------NFKG 465
           +    R  +  P+   PV     R  F D     + R   +   SRD         +   
Sbjct: 429 MAQGERPLILPPD---PVFKPRQRREFNDRDDLGNDRCRNIRSDSRDGDRPRRERRDVGE 485

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
              + + VG     E R ++  +     I+ + IG I++    + +E+      + ++  
Sbjct: 486 MQLYRIEVGRDDGVEVRHIVGTIANEGDISSRYIGNIKLFASHSTIELPKGMPGEILNHF 545

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            RT  L+K + ++ LG  +P+ R   S  F  +  ++GA +R
Sbjct: 546 TRTRILNKPMNMQLLGDAQPNERSGHSRPFNGER-REGAPRR 586


>gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 559

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R          
Sbjct: 419 VLAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477

Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L
Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537

Query: 522 RRTVKLDK--GIQLK 534
              +K  +  G QLK
Sbjct: 538 LTKLKDTRVAGKQLK 552


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/354 (38%), Positives = 205/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+E+GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 16  ALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 72

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ 
Sbjct: 73  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 128 GCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT +P I  LAK++      V +A++N   ++++   + V    + N +  ++    
Sbjct: 188 LFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQ 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDV
Sbjct: 248 MNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 308 AARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361


>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 489

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 204/346 (58%), Gaps = 4/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  
Sbjct: 9   SLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           E+   SPA  P+ AL + PTRELA QV +++  LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ESSSTSPARHPVRALVLLPTRELADQVAQQIA-LYAKYTKLRSTVVFGGMDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y +D + + +A  N   S ++         D+ +AI  +L+  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYSANDDDKRHAIHQVLKSR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G K A +F +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++
Sbjct: 308 VAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353


>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 571

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 205/347 (59%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 96  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 155

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 156 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 215

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 216 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 275

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+ +A+V +LR  G K  I
Sbjct: 276 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVI 335

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 336 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 395

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 396 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 209/374 (55%), Gaps = 12/374 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ERG    + +Q   L   L  +D++  A+TG+GKT+AF L +   L    +R  P   
Sbjct: 15  LAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQKLEPSRERARP--- 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P A+ +APTRELA QV  E    ++K+GV        GG S   +   L+ G  +VVGTP
Sbjct: 72  PRAIVVAPTRELAKQVAEE----FSKSGVGLTTVTVYGGASYAPQENALRRGVDVVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    L++S ++  VLDEADEML +GF D IE IL  +P  R+ ++FSAT++  
Sbjct: 128 GRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSRQTMLFSATLNND 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I  L++NY ++ V V++  E +  +   +++  V V  S R   + ++L  +  + AIVF
Sbjct: 188 INRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRS-RTRVLADLLTIYNPEKAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+         L     +  AL G+L+Q +R  AL   R GR  V +ATDVAARG+D+
Sbjct: 247 TRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +      R    L R   V  +  
Sbjct: 307 PEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITGVRFIER 366

Query: 371 PAPSVEAIRERDAQ 384
           P P+ + ++   A+
Sbjct: 367 PLPTPKEVQAASAK 380


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 217/398 (54%), Gaps = 13/398 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L   GY ++T +Q   L   L  KDV+   +TGSGKT AF L + S L  +
Sbjct: 10  NLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSNLRVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D +PK+R+ L+
Sbjct: 124 AHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I T+A    K    V + S++   S   +      L +RDNA+ N+L  H  
Sbjct: 184 FSATFPEQIQTIAARVMKQPEVVKVESKHDHSSIKQFFYQTNTLEERDNALENLLLTHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+  V      L    F V+ + G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++     +    R  R+    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           + +     P+      + + +  Q  +    IQG +K+
Sbjct: 364 MPIEPSELPA------KSSNQPFQAKMVTIQIQGGKKQ 395


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 153/430 (35%), Positives = 234/430 (54%), Gaps = 21/430 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNIQ------ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I ++K +VLDEADEML++GF +DIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV  V P  M   R  
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-----DEKKMVDVLLAKH 411
           E L ++   ++  EPA    +++E    +I      +D I       D +  VD L +K+
Sbjct: 355 EDLTKKRMTAL--EPA----SLQEARVGKIKNAAGEVDQIVNAVDVKDIQSEVDKLTSKY 408

Query: 412 DPEKIAAGFL 421
             E++AA  L
Sbjct: 409 SSEQLAAALL 418


>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 232/418 (55%), Gaps = 15/418 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              +S        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  
Sbjct: 168 AGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + ++
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      IVF  T+      +  L+  +    AL G++SQ +R   L   R G+  V
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R   
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            L R+      +   P+V  + E  A +++     L+++  D  K       K   EK
Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVVAT---LNAVHPDSIKFFSATAQKLYEEK 518


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 203/349 (58%), Gaps = 2/349 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I  AL+E+GY N T +Q A +   L   D+L +AQTG+GKT AF L +L           
Sbjct: 13  IVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATSST 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  IV
Sbjct: 73  SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK R+ L+FSAT
Sbjct: 133 VATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKPRQTLLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P I  LAK++      V +A++N   ++++   + V    + N +  ++        I
Sbjct: 193 FAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLERLIVDLQMNQVI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDVAARG+
Sbjct: 253 VFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 313 DIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 361


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 219/382 (57%), Gaps = 7/382 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +  E 
Sbjct: 61  LPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQVDPE- 119

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 120 -----VRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+++++ +F
Sbjct: 175 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y  D   V + SE R + +I  R +L     + +A   IL      
Sbjct: 235 SATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRILEVIEYD 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+         L +  +   A++G+++QQ+R   +  ++DGR  + +ATDVAA
Sbjct: 295 AIIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 355 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 414

Query: 366 SVVWEPAPSVEAIRERDAQRIL 387
            +     PS +A+ E+  ++ L
Sbjct: 415 RLEEMDLPSADAVNEKRKEKFL 436


>gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           Flags: Precursor
 gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
          Length = 758

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 221/387 (57%), Gaps = 10/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ E+
Sbjct: 111 LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 170

Query: 67  DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           D  S      P  L +APTRELA QV +E++    K   +  VC+ GGVS + ++  L  
Sbjct: 171 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSR 227

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ +
Sbjct: 228 GVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 287

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240
           +FSAT+   +  L++ Y  + + +++  +  +     I   A+ +  + +   + +++  
Sbjct: 288 LFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITV 347

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V +A
Sbjct: 348 YAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 406

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L 
Sbjct: 407 TDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLE 466

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387
           R+      +   P++E + E  A+ ++
Sbjct: 467 RDVGCRFDFISPPAIEDVLESSAEHVI 493


>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 506

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 3/347 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+++ GY  +T +Q   +   L  +DV+ +AQTG+GKT AF L L   LL  EN   SPA
Sbjct: 32  AVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQRLLKHENASTSPA 91

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV ++++     T +  AV  GG+ +  +  +L+ G  ++V T
Sbjct: 92  RHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTLELKKGVEVLVAT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT SP
Sbjct: 152 PGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQRTTLLFSATFSP 211

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +Y ++ + + +A  N   + ++     V   D+ +A+  +LR    K A VF 
Sbjct: 212 EIKRLASSYLQNPITIEVARSNATATTVEQHFYSVGEDDKRHALRQVLRDKNLKQAFVFV 271

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TDVAARG+D+ 
Sbjct: 272 NSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVDLLVCTDVAARGLDIK 331

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           D+  V + ++  N E+ +HR GRTGRAG  G++V FV P++++  AE
Sbjct: 332 DVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSVAE 378


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 216/366 (59%), Gaps = 10/366 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA- 57
           K FE+    P ++ +AL + GYV+ T +Q   +   L  KDV+ +AQTG+GKT  + L  
Sbjct: 15  KKFEDFGLSPDIL-KALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPM 73

Query: 58  LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           L S L + N   SPA  P+ AL + PTRELA QV  +++     T V  AV  GGV +  
Sbjct: 74  LQSLLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISS 133

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I++ TPGRL DH++ K +N+SH + +VLDEAD MLD+GF  D++ I++  
Sbjct: 134 QTSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLL 193

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT S  I  LA+++ KD V V +A +N    ++      +  S+++ A+ 
Sbjct: 194 PKQRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVE 253

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+    +  ++F +T+A  SR  + L     +  A+ G+ +Q ER   L+  + G   
Sbjct: 254 HLLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSID 313

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ + +L  VI+ +L    E+ +HR GRTGRAG KG ++ +  +    + 
Sbjct: 314 ILVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSE----KD 369

Query: 357 ERLFRE 362
           ERL +E
Sbjct: 370 ERLLKE 375


>gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 557

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 172/550 (31%), Positives = 286/550 (52%), Gaps = 29/550 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + KD   V I S+ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK--HDPEKI 416
           R     V     P  +A+ +   +++     PL  D+ +     ++D L A     P  +
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADA-EATHGDLLDRLTADIGCSPRAL 420

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FKGS 466
           AA  LR    G    L A E+  P+   S     R +    +   G R+        +G 
Sbjct: 421 AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGR 480

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K
Sbjct: 481 ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLTKLK 540

Query: 527 LDK--GIQLK 534
             +  G QLK
Sbjct: 541 DTRVAGKQLK 550


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/359 (38%), Positives = 206/359 (57%), Gaps = 18/359 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALAST 61
           I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L         A AST
Sbjct: 13  IVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST 72

Query: 62  LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                   SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  D
Sbjct: 73  --------SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTAD 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK+R
Sbjct: 125 LRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQR 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT +P I  LAK++      V +A++N   S+++   + V    + N +  ++ 
Sbjct: 185 QTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNLLERLIV 244

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +A
Sbjct: 245 DLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLRVLVA 304

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E +
Sbjct: 305 TDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFEAI 363


>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 484

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY + T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSDQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R  G K  I
Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 496

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 203/343 (59%), Gaps = 4/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY  +T +QE  +   L  +DV+ +AQTG+GKT AF L L   +L  
Sbjct: 9   SLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELA QV ++++ LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ENASTSPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSTVVFGGIDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y ++ V + +A  N   S ++     V+  D+  A+  I++  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRALKQIVKQR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V
Sbjct: 308 VAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAV 350


>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
 gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 465

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 203/349 (58%), Gaps = 14/349 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L P L  KD++  A+TGSGKT AFG+ L S L     +      
Sbjct: 19  LASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSRLDTTALQLQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  + +   V+ VC GGV    +   L++GAH+VVGTP
Sbjct: 75  --ALVLCPTRELADQVAKELRRLARFTENIRVLTVC-GGVPFGPQLGSLEHGAHVVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P +R+ L+FSAT   +
Sbjct: 132 GRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTLLFSATYPDS 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  V V++  E+     I+     V    R  A+  IL  +  ++ +VFC+
Sbjct: 192 IADMSAAMQQTPVEVSV-DEDHVAGTIEQHFYAVEPDQRSEAVARILGRYRPESTLVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E  F  +A+ G+L Q+ER   L    +  A V +ATDVAARG+D+ +
Sbjct: 251 TKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           L  VI+ ELS NPE   HR GRTGRAG +G+++ ++     RR  RL +
Sbjct: 311 LAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLV----SRRDSRLIK 355


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 200/354 (56%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q + ++++E GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNIQ------ALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DH   K + + H+  +VLDEADEML++GF DDIE I++ +P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPAT 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V V  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFVRVRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG +G+SV FV P  M
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEM 348


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 205/347 (59%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 96  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 155

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 156 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 215

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 216 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 275

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+ +A+V +LR  G K  I
Sbjct: 276 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLLRDRGLKQVI 335

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 336 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 395

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 396 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 442


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 165/543 (30%), Positives = 274/543 (50%), Gaps = 42/543 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ + G+   T +Q   + P L  KD++  AQTG+GKT AFG+ L   +   
Sbjct: 10  NISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKIDTR 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           N +      P A+ + PTRELA+QV  EL+ L  Y ++   + V  GG S+ R+ + L+ 
Sbjct: 70  NKK------PQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVY-GGQSIKRQIKALKK 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++GTPGR+ DH+R   LN+SH+  VVLDEAD MLD+GF DDI+ IL   P  R+ L
Sbjct: 123 GVQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI   I  L+K YQK +  + IA E      I+     V  SD+   +  ++  + 
Sbjct: 183 FFSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDKLKVLTRLIDLYS 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +++FC+TR  V      L    +   AL G  +Q +R   +   R+G   + +ATDV
Sbjct: 243 PGLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362
           AARGID+  +E V + ++  + +  +HR GRTGRAG+ G +  FV+ +++ +  + + + 
Sbjct: 303 AARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRD-IQKY 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPE----KIA 417
               ++ +  P++  I +   + ++ D    D I  +  KK + ++    D +    +IA
Sbjct: 362 TKTRIIKQDIPTLTDIEQAKLENLIND--LTDYIDREHLKKYIKIIENLLDDDYTAIEIA 419

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A   + +     +  EI    L        +D+ A            G     +++G K 
Sbjct: 420 AALFKKYMENESSEGEINNNKL--------NDTGA----------EPGMVRLFINIGKKH 461

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
                 ++  +   + ++ + IGAI +  + TFVEV  +     R  +K+ K     Y+ 
Sbjct: 462 NITPGHIVGAIAGETSLSGRLIGAIDLYDNFTFVEVPEESS---REVLKIMKN---NYIK 515

Query: 538 GEK 540
           G+K
Sbjct: 516 GKK 518


>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 559

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 167/547 (30%), Positives = 281/547 (51%), Gaps = 29/547 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++   L+  GY   +++Q   +   L   D++  AQTG+GKT AF L + + +     
Sbjct: 15  PNIVAAVLAT-GYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
                  P AL +APTRELA+QV    E  YAK   GV V    GG  +  + R ++NGA
Sbjct: 73  -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++F
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I ++A+ + ++   V I S+ +  + ID   ++V    +  A++ +L      
Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ +A+ +   +++     PL  ++ +    ++ D L       P  ++A  L
Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTEALGCSPRALSAALL 425

Query: 422 RIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469
           R    G    L A E   P+  S     +R     RA +   G R+        +G    
Sbjct: 426 RKATNGQALDLAAVEREQPLVPSFAPRGERPERGDRAERSDRGERERRAPLPLAEGRVRC 485

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++ L   +K  +
Sbjct: 486 RTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLTKLKDTR 545

Query: 530 --GIQLK 534
             G QLK
Sbjct: 546 VAGKQLK 552


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/345 (40%), Positives = 205/345 (59%), Gaps = 5/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+++  A++E GY   T +Q+  +   L  +DV+  AQTG+GKT  F L L   L    
Sbjct: 9   IPELL-RAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQRLARHA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           +   SPA  P+ AL +APTRELA+QV   ++  Y+K   + + CI GGV +  + +DL+N
Sbjct: 68  STSTSPARHPVRALILAPTRELAMQVFESVKT-YSKYVPLRSTCIYGGVDMKPQIQDLRN 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL DH++ K + +  ++ +VLDEAD MLD+GF  DI  ILD  P  R+ L
Sbjct: 127 GIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLPAARQSL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA    K+   + +A  N     I +R   V+   + N + ++LR+  
Sbjct: 187 LFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHLLRHEP 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+ + SR    L  H     A+ G+  Q +R++ L+  + G+ RV +ATDV
Sbjct: 247 DTQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+ DL  VI+ EL    E+ +HR GRTGRAGR+G +V ++
Sbjct: 307 AARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLV 351


>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
          Length = 748

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/391 (34%), Positives = 226/391 (57%), Gaps = 14/391 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              ++        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + ++
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344

Query: 239 LRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +  +  G KN IVF  T+      +  L+  +    AL G++SQ +R   L   R G+  
Sbjct: 345 ITVYAKGGKN-IVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFT 402

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  
Sbjct: 403 VLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTV 462

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
             L R+      +   P+V  + E  A +++
Sbjct: 463 RSLERDVGCHFEFISPPTVGDLLESSADQVV 493


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 163/519 (31%), Positives = 263/519 (50%), Gaps = 30/519 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +A+ E GY N T +Q   +   +  KDVL  + TG+GKT AFG+  A   + + 
Sbjct: 9   ISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIP-AIEKVCQG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R+     P AL I PTREL  QV  EL ++   K GV +    GG  + R+ + L+ G 
Sbjct: 68  TRY-----PNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKRGC 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IVVGTPGR+ DH+  + L + +   V+LDEADEML++GF++DIE IL   P+  + + +
Sbjct: 123 GIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQTI 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  + K +Q D VRV I S  R    ++          + NA+  +L ++ 
Sbjct: 183 LFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYDAPRGKKANALRVLLSHYD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++FC+T+  V      L +H  + ++L G++ Q+ RS  ++  R G   + IATDV
Sbjct: 243 PDLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFRE 362
           AARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ ++    QR   R + R 
Sbjct: 303 AARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGIRDIIRY 362

Query: 363 ANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              ++V    P+   + E  R+A          + I  +  ++ + L+A    E IA   
Sbjct: 363 TKTNIVRHALPTSAQMMEANRNAFVAKVKEACDEGITEESMEIANELMA----EGIALEN 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +      +    EI  +       R+   + AF            +     +VG     +
Sbjct: 419 IISALISMTYKNEIIDIEADEDVKRY---ASAFD-----------AITLKFNVGRNNGVQ 464

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
              ++  +   SG+N ++IG I V+ D T V+V A  VD
Sbjct: 465 PGNIVAAIIEESGLNGKAIGRIDVRKDFTLVDVEASKVD 503


>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 486

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 4/349 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+   + +  A++E GY  +T +Q   +   L  +DV+ +AQTG+GKT AF L L   
Sbjct: 5   FSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLLQR 64

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LL  E+   SPA  P+ AL + PTRELA QV R++      T +   V  GG+ +  +  
Sbjct: 65  LLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQTL 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+
Sbjct: 125 ELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKE 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT SP I  LA +Y    V + +A  N   + ++ R       D+  AI  +L
Sbjct: 185 RTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRRAIHQVL 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R  G K A +F +++   +R  + L     +  AL G+ SQ ER  ALQ  + G   + +
Sbjct: 245 RTRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVDLLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++
Sbjct: 305 CTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLV 353


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 11/414 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL ++G+   T +QE ++   L+ E D++  AQTG+GKT AFG  +   +  ++     
Sbjct: 18  KALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAPIIEKIPEKSGYVQ- 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  EL  +     + V    GG S+ ++ R L++G  IVVGT
Sbjct: 77  -----AIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKSGVDIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+  K L++ H+   VLDEADEML++GF DDI+ IL ++   +RML FSAT+  
Sbjct: 132 PGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + K Y ++   V I  E       +     V  +D+  A+  I+        +VFC
Sbjct: 192 PILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEVQENDKFEALSRIIDIEDEFYGLVFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  + L++  ++  AL G+LSQQER   L   R  +  V +ATDVAARGID+ 
Sbjct: 252 RTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVATDVAARGIDIM 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +   +    
Sbjct: 312 DLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKSEMKKGR 371

Query: 372 APSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            P ++ + +    R+   L++ +  +   GD  +M + LL ++  EKI A  L+
Sbjct: 372 IPEIKDVIKAKRARVKAELEETIKTEEY-GDCLEMSERLLEEYPAEKILAALLK 424


>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 511

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 44  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  +
Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVL 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390


>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 482

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 198/340 (58%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL   N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQRLLPLANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P +R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 361


>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 598

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 273/554 (49%), Gaps = 41/554 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q   +   L   DVL  AQTGSGKT AFGL L   +  +     
Sbjct: 18  ILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLLQNIKPD----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              AP  L +APTRELAVQV + L     Y K G+ V    GG   H + + L+ G  IV
Sbjct: 73  -IKAPQILVLAPTRELAVQVAQALTNFSKYMK-GINVLALYGGQPYHVQLKALRQGPQIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   LN+S L  +VLDEADEML +GF +D+E IL   P + +  +FSAT
Sbjct: 131 VGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAEHQTALFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + + K+   V I S      DI+     V    ++ A+V  L       AI
Sbjct: 191 MPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQALVRFLEVEDFDAAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L +  +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 251 IFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    + R  RL +     V+
Sbjct: 311 DVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV----ENRERRLLKNIE-RVI 365

Query: 369 WEPAPSVEAIR-ERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419
            +P P ++  + E  +QR L+         I+  + +M   LL K  PE+      IAA 
Sbjct: 366 KQPIPEIQLPKAELLSQRRLEKFAATVRQHIESSDLEMYKTLLKKLRPEEPFDLEMIAAA 425

Query: 420 FLRI---HRAGLCAPEEITP---------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            L++    R  +  P+ +           V     R  +RD S   +     R +     
Sbjct: 426 LLKMAQSERPLILPPDPVRSARRECHEREVRSTHRRRDYRDSSE--RPSYRERRDIGEMQ 483

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRR 523
            + + VG     E R ++  +     I+ + IG I + P  + +E+  +     V    R
Sbjct: 484 LYRIEVGRNDGVEIRHIVGAIANEGDISSRYIGNISLFPSHSTIELPKEMHKNIVSHCTR 543

Query: 524 TVKLDKGIQLKYLG 537
           T  L+K I +K LG
Sbjct: 544 THILNKPINIKLLG 557


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 174/519 (33%), Positives = 275/519 (52%), Gaps = 27/519 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +        P   P AL
Sbjct: 38  GYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRIA-----HGPRQRPTAL 92

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV   ++    +  + V    GG ++  + + L+ G  ++V TPGR  DH
Sbjct: 93  VLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRRGVEVIVATPGRALDH 152

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R K L ++ L+ VVLDEADEMLD+GF DD++ IL+ +P  ++  +FSAT+ P I ++A+
Sbjct: 153 LRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFSATMPPRIASIAR 212

Query: 199 NYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            + K+ V V IA E  +      +   A +VA   + +A+  +L     K+A+VFC TR 
Sbjct: 213 RHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDIATPKSALVFCRTRL 272

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  L    ++  A+ G +SQ +R   +Q  R G+  + +ATDVAARG+D+P +  
Sbjct: 273 EVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDVAARGLDIPSVSH 332

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--RAERLFREANVSVVWEPA- 372
           VI+ +L S+ E  +HR GRTGRAGR+G ++ +I    QR  RA     +A ++V   P+ 
Sbjct: 333 VINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQHTKAKITVAAVPSL 392

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRA--GLC 429
             + A R    +  +Q+ L    ++ D +++V+ L A  +P  IAA  ++ ++R+  G  
Sbjct: 393 GDLLAKRLERTKASIQETLEAGELE-DFRRVVEALSASAEPADIAAAAIKLVYRSHGGER 451

Query: 430 APEEITPVS------LVSGRDRF----RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           A EEI  VS        S R  +    +   RA    GG     + +    + VG+ + A
Sbjct: 452 AEEEIPAVSTRPPEPYRSSRPSYGSAPQQGDRARAPRGGPSRGGRAAGTVRVYVGAGRAA 511

Query: 480 EARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             R   L+  +   +G+  + IGAI V+   + V+V  +
Sbjct: 512 GIRPGDLVGAIANEAGVPSRMIGAIEVEERFSLVDVQEE 550


>gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
 gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
          Length = 461

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 214/369 (57%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   LS+ GY  +T +Q A L   L+  DVL  A+TGSGKT  FGL L   L  E
Sbjct: 11  NLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQRLEVE 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  EL  L      + +    GG +   +   L++G
Sbjct: 71  RFRVQ------ALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLEHG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+R   L +  L+ +VLDEAD MLD+GF + ++ ILD +PK+R+ L+
Sbjct: 125 AHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQTLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI ++AK  Q +   + + + +  H DI+     V L +R   +  +L+ +  
Sbjct: 185 FSATYPEAIESMAKRVQHNPQVIEVEAVHSDH-DIEQMFYKVPLENRTQVLGLLLQKYLP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+         L +  F  VAL G++ Q++R   L +  +  A V +ATDVA
Sbjct: 244 ESCMVFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +++LV++ +LS +PE  +HR GRTGRAG++G +V ++ +N + + E +  +++
Sbjct: 304 ARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSMLNENEKFKVELICADSD 363

Query: 365 VSVVWEPAP 373
            S   +  P
Sbjct: 364 ASPELKNPP 372


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y +D   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/526 (31%), Positives = 263/526 (50%), Gaps = 20/526 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---- 63
           P+++ +AL+E GY   T +Q A + P L   DV+  A TG+GKT AF L +   +     
Sbjct: 25  PELL-QALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHRIRDGER 83

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R    +AP A+ + PTRELA QV   +     + GV V    GG S+ R+ R L+
Sbjct: 84  GERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQLRALE 143

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGR  DH+    L++S L+ VVLDEADEMLD+GF +DI+ IL+ +P  R+ 
Sbjct: 144 EGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTPDDRQT 203

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+ P I  L + Y +D  R+ ++       D   I   A +V    +  A+  +L
Sbjct: 204 MLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGHKPAALGRVL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VFC TR  V R T+ +    ++  AL G + Q +R+  +  +R G A + +
Sbjct: 264 DIETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGRLRTGTADLVV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  V++ ++ S PE  +HR GR GRAGR+G ++ +      R  + +
Sbjct: 324 ATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGEHRMIKAI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPE 414
            R     V     P+V  +R R  +  L      + + GDE     + +V+ L  + D  
Sbjct: 384 ERVTGQPVPIRKLPTVADLRARRLE--LTRAALREVLAGDEDLDRYRAVVEPLTEEFDVT 441

Query: 415 KIAAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +IA   +++ H A     EE  P   +    R R   R  K G   R    G +   +S+
Sbjct: 442 EIALAAVKLAHDAEHATDEEEIPDVELRPEVRTR---RLPKNGRKGRRTSGGMTRLFVSL 498

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           G +     + L+  +   S +  + +GAI +    + V+V     D
Sbjct: 499 GRQAGVRPQDLVGAIAGESCLRGKDVGAIEIADRFSLVDVPDAAAD 544


>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
 gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
          Length = 597

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 204/350 (58%), Gaps = 10/350 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68
           I +AL++RG VNL  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +  E    +
Sbjct: 15  IVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREKSSMQ 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
           F PA  P A+ +APTRELA QV  EL        VV   CI GGVS+  +RR L +   +
Sbjct: 75  FRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVV---CIYGGVSIEGQRRQLASSVEV 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +    L ++ +K  +LDEAD+ML +GF +++E I+   P +R  ++FSA
Sbjct: 132 VVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTMLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGA 244
           T+   I  L   Y K+   +++  EN        +   V+ +D  ++  + ++L  Y   
Sbjct: 192 TMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKG 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+        V++  +    AL G++SQ +R   L   RDGR  V +ATDVA
Sbjct: 252 GKAIVFTKTKRDTDDVAAVMSRSI-GCEALHGDISQYQREKTLSGFRDGRFNVLVATDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARG+D+P+++L++H E+  + E  +HRSGRTGRAG+KG  + +   N +R
Sbjct: 311 ARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKR 360


>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 486

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 202/343 (58%), Gaps = 4/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ + +  A++E GY  +T +QE  +   L  +DV+ +AQTG+GKT AF L L   +L  
Sbjct: 9   SLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLKH 68

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
           EN   SPA  P+ AL + PTRELA QV ++++ LYAK T +   V  GG+ +  +  +L+
Sbjct: 69  ENASTSPARHPVRALVLLPTRELADQVAQQVK-LYAKYTNLRSTVVFGGIDMKPQTLELK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  
Sbjct: 128 KGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT SP I  LA +Y ++ V + +A  N   S ++     V   D+  A+  I++  
Sbjct: 188 LLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRALKQIVKQR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TD
Sbjct: 248 GITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDLLVCTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V
Sbjct: 308 VAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAV 350


>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
 gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 222/387 (57%), Gaps = 10/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   ++ ++
Sbjct: 98  LPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIEQD 157

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           +  +P     P AL +APTRELA QV +E+     K   +  VC+ GGVS + ++  L  
Sbjct: 158 EGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPK---LSTVCVYGGVSYNTQQNALSR 214

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGRL D I G  L +  ++ +VLDEAD+ML +GF +D+E IL   P +R+ +
Sbjct: 215 GVDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQSM 274

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR- 240
           +FSAT+   +  L++ Y  + + +++  +  +     I   A+ +  + +   + +++  
Sbjct: 275 LFSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSKRTILSDLITV 334

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      IVF  T+      +  L   +    AL G++SQ +R   L   R G+  V +A
Sbjct: 335 YAKGGKTIVFTRTKRDADEVSLALTTSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   N +R  + L 
Sbjct: 394 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQRRTVKSLE 453

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL 387
           R+      +   P++E + +  A+ ++
Sbjct: 454 RDVGCKFEFIGPPTMEEVLDSSAEHVI 480


>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 497

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 204/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  +
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQLLRDRGLKQVL 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 162/523 (30%), Positives = 272/523 (52%), Gaps = 48/523 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + STL  E
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISTLCDE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  GKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  +VLDEADEML++GF +DIE I+ S+P++++ +
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  AI  I+   
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSV 473
           ++A  + +    L + E    +S     D+   +   R F                 LSV
Sbjct: 419 VSAALMEM----LFSKE----MSFDYTNDKLEAEVPVRLF-----------------LSV 453

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           G K     + L+  +   + +    IG I +    TF++VS++
Sbjct: 454 GRKDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSSN 496


>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 526

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 259/508 (50%), Gaps = 37/508 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+   T +Q   +   +  +D++  AQTG+GKT +FG+ +   +  +N       
Sbjct: 18  AVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQKVDPKNKHVQ--- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              A+ + PTRELA+Q   E+  L AK   G+ V    GG  + ++ R L+ G  +++GT
Sbjct: 75  ---AIVLCPTRELAIQSADEIRKL-AKFMHGIKVLPIYGGQDIVKQIRSLKTGVQVLIGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   + +  LK VVLDEADEML++GFR+DIE IL  +P++R+ L+FSAT+  
Sbjct: 131 PGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEERQTLLFSATMPQ 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ YQK+A  V +       ++I+     V   +++  +  +L  +    ++VFC
Sbjct: 191 PIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPKNKEEVLSRLLDIYNPALSVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V    + L    +    L G++ QQ+R   +   R+GR  + +ATDVAARGID+ 
Sbjct: 251 NTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVATDVAARGIDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D++ V + +L  + E  +HR GRTGRAG+ G +   I      + + + R     ++ + 
Sbjct: 311 DVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQRYCRTKIIAKQ 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK--IAAGFLRIHR 425
            PS+  +    A +I +    +  I  D  K    M++  L K D     +AA FLR   
Sbjct: 371 VPSLNDVANVKADKIFEKVAGM--IDEDNLKPYIRMIEEKLEKEDYTTLDLAAAFLR--- 425

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
             +   +E   V +    D F D         G+ D   G     +++G  QKA    ++
Sbjct: 426 --MALGDEDKSVEV----DDFGD--------TGAED---GMVRLFINIGKNQKARPGDIL 468

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             +   +GI    IG I +    TFVEV
Sbjct: 469 GAIAGETGIAGSLIGTIDMYDKYTFVEV 496


>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
 gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
          Length = 614

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/350 (37%), Positives = 204/350 (58%), Gaps = 10/350 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68
           I +AL++RG VNL  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +  E    +
Sbjct: 15  IVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREKSSMQ 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
           F PA  P A+ +APTRELA QV  EL        VV   CI GGVS+  +RR L +   +
Sbjct: 75  FRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVV---CIYGGVSIEGQRRQLASSVEV 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +    L ++ +K  +LDEAD+ML +GF +++E I+   P +R  ++FSA
Sbjct: 132 VVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTMLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGA 244
           T+   I  L   Y K+   +++  EN        +   V+ +D  ++  + ++L  Y   
Sbjct: 192 TMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVYAKG 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+        V++  +    AL G++SQ +R   L   RDGR  V +ATDVA
Sbjct: 252 GKAIVFTKTKRDTDDVAAVMSRSI-GCEALHGDISQYQREKTLSGFRDGRFNVLVATDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARG+D+P+++L++H E+  + E  +HRSGRTGRAG+KG  + +   N +R
Sbjct: 311 ARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKR 360


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 154/509 (30%), Positives = 262/509 (51%), Gaps = 55/509 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYV+ + +QE  +   L  +D++  AQTG+GKT+AFG  L S +  E           AL
Sbjct: 23  GYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLSKIQKEGKHVK------AL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  EL+ +   T + +    GG  + R+ +DL+ GA IVVGTPGR+ D 
Sbjct: 77  ILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKDLKRGADIVVGTPGRVQDL 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L I+++  +VLDEADEML++GF +DIE IL ++P  ++ ++FSAT+   I  +A 
Sbjct: 137 MRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNKQTVLFSATMPATIKKIAS 196

Query: 199 NY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           NY Q D + + I S+ +  S +         +++   +  IL     +N I+FC T+ SV
Sbjct: 197 NYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRILDSRQMENTIIFCKTKRSV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 + +  + V A+ G+LSQ +R+N L+  + G  +  +ATDVAARGID+ ++  VI
Sbjct: 257 DEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLVATDVAARGIDVDNISHVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + E+  + E  +HR GRTGRA +KG +  ++    +     + +  N  +     PS + 
Sbjct: 317 NYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSIQKRTNSHIEKLDVPSNQE 376

Query: 378 IRERDAQRILQD----------PLFLDSIQGDEKKM-VDVLLAKHDPEKIAAGFLRIHRA 426
           I ++  + +L D           +F+D+I+     M  DV+          A  L     
Sbjct: 377 IFDQKIKELLFDVQEEMLKSHKDVFMDTIKDIPHDMRTDVM----------ATLL----- 421

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARWL 484
            +C  + +       G D +++++ A            GS +    ++ GS  +   + +
Sbjct: 422 SMCYQQRV-------GFD-YQEETSA------------GSQYDRVFMTCGSMDRINVKDV 461

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +  L +   I    IG I ++   TFV++
Sbjct: 462 IEFLTKYGKIKSSDIGDITIKRKFTFVDI 490


>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
 gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
          Length = 526

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 269/522 (51%), Gaps = 46/522 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTL 62
            E  P+++ +A+ + G+   + +Q   + P +RE +D++  AQTG+GKT AFG+ L   +
Sbjct: 9   LELCPEIM-KAVKKMGFEEASPIQAKAI-PLVREGRDIIGQAQTGTGKTAAFGIPLLEKI 66

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRER 118
             +N +        A+ + PTRELA+QV  E+    E+++   G+ V    GG  + ++ 
Sbjct: 67  DPKNKKLQ------AVVLCPTRELAIQVADEIRTLAEYMH---GIKVLPIYGGQEIVKQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G  +++GTPGR+ DH+R K + + H+  VVLDEADEML++GFR+DIE IL+  P+
Sbjct: 118 RSLKSGVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I  + K +QK A  V +  +     +I+     V   +++  +  +
Sbjct: 178 ERQTVLFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  K ++VFC+T+  V      L    +    L G+L Q +R   +Q  R G+  + 
Sbjct: 238 LDIYNPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      +   
Sbjct: 298 VATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLRE 357

Query: 359 LFREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + R     +  +  PS++ +          +A RI++       IQ  ++++ D      
Sbjct: 358 IQRYCKTKIYAQKVPSLDDVANTKMEKVMEEASRIIEQEDLGTFIQLVQEEINDTDYTSM 417

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D   IAA  L+     +C     T  +  +  D F D         G+ +   G     +
Sbjct: 418 D---IAAALLK-----MC-----TGTAEETDVDNFEDT--------GAEE--PGMVRLFI 454

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++G K KA+   ++  +   SG+  + +G I +    TFVEV
Sbjct: 455 NIGKKHKAKPGDILGAIAGESGMPGKVVGTIDMYDKYTFVEV 496


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 278/543 (51%), Gaps = 53/543 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 81  LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P  +++ +F
Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  D   + + +  R   +I+   +LV+  D+ +A+  IL     +
Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVAA
Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  + E+ +HR GRTGRAGRKG ++ FV P+  +RR  +    A 
Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPR--ERRLLKSIERAT 432

Query: 365 VSVVWE-PAPSVEAIRERDAQRI-------LQDP---LFLDSI----QGDEKKMVDVLLA 409
            S + E   P+V+A+ E   ++        L DP   +F D +    + +E ++ D+  A
Sbjct: 433 KSRLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAA 492

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------ 463
                +    FL   +     P+E  P      RDR+ DD+R+   GGG+   F      
Sbjct: 493 LAAQLQAGEDFLMKEK-----PKEERPRR----RDRYGDDNRS---GGGAYKPFDERFNK 540

Query: 464 ----------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                     K  + + LSVG +Q+     ++  L    G++ +  G I +  + + VE+
Sbjct: 541 EAPRITDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVEL 600

Query: 514 SAD 516
            AD
Sbjct: 601 PAD 603


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 99  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 158

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 159 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 218

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 219 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 278

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 279 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 338

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 339 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 398

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 399 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 445


>gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
 gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
          Length = 611

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 217/376 (57%), Gaps = 13/376 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+   G+ + T +Q   + P L  KDVL  AQTG+GKT AFGL      LA+ 
Sbjct: 22  LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPA----LAKI 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D  +    P  + +APTRELA+QV   +E       G+ VA   GG S   + + L+ GA
Sbjct: 78  D--TSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+R K L +  L+  VLDEADEML++GF +DI++ILD  PK  +M +F
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A  + KD   + +A+  +  ++I   A  V+   +  A+  I       
Sbjct: 196 SATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYD 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR       + L    +  +AL+G+L+Q +R   +  M+ G++ + +ATDV A
Sbjct: 256 AMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           RG+D+P + LVI+ +L  + E  +HR GRTGRAGR+GMS+ FV P+ M   R  ERL   
Sbjct: 316 RGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERL--- 372

Query: 363 ANVSVVWEPAPSVEAI 378
            N +V+    P+++ I
Sbjct: 373 TNGTVLNYDLPNIQDI 388


>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
 gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 473

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/340 (40%), Positives = 200/340 (58%), Gaps = 12/340 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L + GY+ +T +Q A L   L  KD++  A+TGSGKT AF LAL        +R +P   
Sbjct: 33  LQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALALL-------ERLNPRRF 85

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  AL + PTRELA QV  E+  L   T    VV +C GGV++  +R  L+ GAHIVVGT
Sbjct: 86  AVQALVLCPTRELADQVTIEIRRLARATDNIKVVTLC-GGVALRGQRASLEQGAHIVVGT 144

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+  + LN+  L  +VLDEAD MLD+GF DD+  +    PK+R+ L+FSAT   
Sbjct: 145 PGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCPKERQTLLFSATYPE 204

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ + ++ +RV +A++  + S I+ R   V  ++R  A+  +L +    + + FC
Sbjct: 205 GIEKLAQQFMREPLRVQVAAQQTE-SLIEQRFYEVTRANRFEAVALLLNHFRPISTLAFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L    F  +AL GEL Q+ER   L    +  A V +ATDVA+RG+D+ 
Sbjct: 264 NTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASVLVATDVASRGLDIT 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            LE VI+ +++ +PE  +HR GRTGRAG  G+++ +   N
Sbjct: 324 QLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMN 363


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 130/341 (38%), Positives = 202/341 (59%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L  +DVL  AQTG+GKT AFGL L   +    +     
Sbjct: 14  QAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLLEKIDHHTEHIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL IAPTRELA+Q G+EL  L  + GV      GG ++ R+   ++ GA +VVGTP
Sbjct: 72  ----ALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIHQIKKGAPVVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ K LN++ ++ +VLDEADEML++GF +DIE I+ ++P  R+ L+FSAT+   
Sbjct: 128 GRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSNRQTLLFSATMPKE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + +++ +D V V I ++      ID         ++ + +   +    AK AIVF  
Sbjct: 188 IQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDREKFDLLTRFIDVSHAKLAIVFAR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L E  +Q   + G+LSQ++RS+ ++  +DGR  + +ATDVAARG+D+ +
Sbjct: 248 TKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILVATDVAARGLDISN 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + ++  +PE+ +HR GRTGRAG+ GMS+ FV    M
Sbjct: 308 VTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEM 348


>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
 gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
          Length = 481

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 154/509 (30%), Positives = 258/509 (50%), Gaps = 33/509 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q A +   L  +DV+  AQTG+GKT AFG+ L        +R S  
Sbjct: 30  QAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-------ERVSTE 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ + PTRELA+QV  E+  +     V      GG S+  + R L+ G  IV+GTP
Sbjct: 83  PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQIVIGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++S ++ VVLDEADEMLD+GF DDIE IL  +P  R+ ++FSAT    
Sbjct: 143 GRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFPNE 202

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA  Y +D   + +         ID     V   ++ +++  I+     +  I+FC 
Sbjct: 203 VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSEDIQLGIIFCR 262

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    L G+LSQ +R   ++  R     + +ATDVAARG+D+ D
Sbjct: 263 TKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDD 322

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  +PE+ +HR GRTGRAG++G+++ ++     +  +++ RE    +     
Sbjct: 323 VTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREV 382

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           PS+E + ER A+  +     +D I+       + ++  L+ +HDP  IA+  L++  +G 
Sbjct: 383 PSLEDVAERQAE--MWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLASSG- 439

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
                          D  R +S  +  G  G+R    G   F ++VG   +   +  +  
Sbjct: 440 ---------------DGNRTESDEYDFGDTGAR---PGMVRFFVNVGRTSRMSPQDFVRA 481

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +   +G+   ++G I +    TF+EV  +
Sbjct: 482 ISEEAGVPGDAVGRIDMFEKFTFIEVEEE 510


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/362 (38%), Positives = 210/362 (58%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GYV +T +QEA L   L  KDV   A+TGSGKT AFGL L   + A+  +FS  S 
Sbjct: 18  LTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAK--QFSTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  Y     ++ +C GGV    +R  L + AHI+V TP
Sbjct: 75  ---LVLCPTRELADQVASELRRLARYMANIKILTLC-GGVPFSVQRDSLIHAAHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + + +  L+ +VLDEAD MLD+GF DDI+ ++  +P  R+ L+FSAT    
Sbjct: 131 GRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYAPISRQTLLFSATWPET 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT +++  Q++A+ + I S +   + I+ R   VA  ++ + +  +L      + +VFC+
Sbjct: 191 ITAMSQRIQRNAITIEINSVDELPA-IEQRFYEVARHEKIDLLQKLLSQQQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E    V+ L G++ Q+ER   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVYDALNECHQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L++VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L    N+ + W+  
Sbjct: 310 LDMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANVLEEMLNIKLNWKSV 369

Query: 373 PS 374
           P+
Sbjct: 370 PT 371


>gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
 gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 482

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 159/521 (30%), Positives = 261/521 (50%), Gaps = 38/521 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+ + GY   + +Q   +   +   DV+  AQTG+GKT +F + +   +  +N
Sbjct: 11  VSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPILENIDRDN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +        A+ + PTRELA+QV  E+  L  Y + G+      GG  + R+ + L+ G
Sbjct: 71  RKLQ------AIVLCPTRELAIQVSEEVRKLAKYMQ-GIRTLPIYGGQPIDRQIKALKGG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + +GTPGR+ DHI  K L +  +K VVLDEADEMLD+GFR+DIE IL + P++R+  +
Sbjct: 124 VQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVPEERQTAL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  L K YQKD V + +  +    S+I    +    S++   +  +L  +  
Sbjct: 184 FSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNKLEVLTRLLDVYNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF +T+         L    +   +L G+L Q +R   +   R G   + +ATDVA
Sbjct: 244 KLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+ D+E VI+ EL  + E  +HR GRTGRAGR+G++  F   + M R+ + + R  
Sbjct: 304 ARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREM-RKLKDIERYT 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
              +V    PSV  + E+   +           QG ++ + +  +AKH        ++  
Sbjct: 363 KSKIVKHDIPSVNDVEEKKVSQFF---------QGVKETLEEGNIAKH------VQWIE- 406

Query: 424 HRAGLCAPEEITPVSLVSG--RDRFRDDS--RAFKVGGGSRD----NFKGSSWFSLSVGS 475
                C  E+ + + + +   ++   D+      +    SRD    N    +   L+VG 
Sbjct: 407 ---DFCNEEDYSMIDICAAILKNSMGDEEMQEIVEEAPKSRDRHRLNQSDVTRLFLNVGK 463

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            Q+  A+ ++  +   +GI  + IG I V    TFV+V  +
Sbjct: 464 NQRILAKDILGAIAGETGIRSKFIGNIDVYDKYTFVDVDKN 504


>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 506

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 200/343 (58%), Gaps = 2/343 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           +  A+++ GY  +T +Q   +   L+ +DV+ +AQTG+GKT AF L L   +L  EN   
Sbjct: 26  LARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLLQRMLKHENSST 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV + ++     T +  AV  GG+ +  +  +L+ G  ++
Sbjct: 86  SPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQTLELKKGVEVL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT
Sbjct: 146 VATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA +Y +D V + +A  N   S ++     V   D+ +A+  IL+  G K A 
Sbjct: 206 FSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHALHQILKSRGMKQAF 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG+
Sbjct: 266 VFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  + ++
Sbjct: 326 DIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKS 368


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 13/381 (3%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L E G+  +T +Q A L   L+ +DV   A+TGSGKT AFG+ 
Sbjct: 1   MTAFSTLTQLPASQLDNLREMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           L   +  +N +F       AL + PTRELA QV   L  L  + +   ++ +C GG  + 
Sbjct: 61  LLQRI--DNSQFHTQ----ALVLCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMS 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++   L+++ L+ +VLDEAD ML++GFRDD+E I+  
Sbjct: 114 AQRDSLVHAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGF 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P  R+ L+FSAT    I +L++ YQ+DA+ V   +E    + I+ R + V+ S+R N +
Sbjct: 174 TPAARQTLLFSATWPDTIASLSERYQRDALAVATETEAELPA-IEQRFIEVSASERTNLL 232

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + +VFC+T+         L +     +AL G+L Q++R   L    +G  
Sbjct: 233 SALLSQQQPTSCVVFCNTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSI 292

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV IATDVAARG+D+  L LV++  L+ +PE  LHR GRTGRAG  G++V  +  +   R
Sbjct: 293 RVLIATDVAARGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEMAR 352

Query: 356 AERLFREANVSVVWEPAPSVE 376
           A  L      S+ W  A +++
Sbjct: 353 AHALEDYLQQSLNWVAASTLK 373


>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
          Length = 557

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 174/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     +  +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I S+ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCTPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464
            +AA  LR    G    L A E+  P+   S     R +    +   G R+        +
Sbjct: 419 ALAAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+D L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 204/347 (58%), Gaps = 4/347 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72
           AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L     L        SPA
Sbjct: 40  ALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLELLKRYATSSTSPA 99

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  IVV T
Sbjct: 100 MHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLRAGCEIVVAT 159

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSAT SP
Sbjct: 160 VGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSATFSP 219

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
            I  LA+++      V +A++N  +++++   + V AL  R      I+  H     IVF
Sbjct: 220 PIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLERLIVDLH-MNQVIVF 278

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDVAARG+D+
Sbjct: 279 CKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLRVLVATDVAARGLDI 338

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 339 AELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMFE 385


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 168/543 (30%), Positives = 278/543 (51%), Gaps = 53/543 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 81  LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P  +++ +F
Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  D   + + +  R   +I+   +LV+  D+ +A+  IL     +
Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVAA
Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  + E+ +HR GRTGRAGRKG ++ FV P+  +RR  +    A 
Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPR--ERRLLKSIERAT 432

Query: 365 VSVVWE-PAPSVEAIRERDAQRI-------LQDP---LFLDSI----QGDEKKMVDVLLA 409
            S + E   P+V+A+ E   ++        L DP   +F D +    + +E ++ D+  A
Sbjct: 433 KSRLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAA 492

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------ 463
                +    FL   +     P+E  P      RDR+ DD+R+   GGG+   F      
Sbjct: 493 LAAQLQAGEDFLMKEK-----PKEERPRR----RDRYGDDNRS---GGGAYKPFDERFNK 540

Query: 464 ----------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                     K  + + LSVG +Q+     ++  L    G++ +  G I +  + + VE+
Sbjct: 541 EAPRITDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVEL 600

Query: 514 SAD 516
            AD
Sbjct: 601 PAD 603


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 176/525 (33%), Positives = 269/525 (51%), Gaps = 20/525 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY   T +Q   +   L  +D+L  A TG+GKT AF L     +L    R +   
Sbjct: 24  ALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFAL----PILHRTPRPADEP 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV         + GV V    GG  + R+ + L+ G  +VV TPG
Sbjct: 80  DPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLKRGVDVVVATPG 139

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D I    L ++ L+ VVLDEADEMLD+GF +DIE IL  +P +R+ ++FSAT+ P I
Sbjct: 140 RALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQTVLFSATVPPRI 199

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+ + ++ VR+ IA   R+      +  RA +V  + +  A+  +L       AIVF
Sbjct: 200 DGIARRHLREPVRIEIARPEREVGRPPLVRQRAYVVDRAHKPAALGRLLDVEAPTAAIVF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR  V   T++L    ++  AL G +SQ +R   +  +R G A + IATDVAARGID+
Sbjct: 260 CRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRLRAGTAELLIATDVAARGIDV 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++  + S+P++ +HR GR GRAGR+G++  +      R  + + R     +  E
Sbjct: 320 EHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEPREHRMLKSIERATGHKITIE 379

Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426
             P+V  +R R     +  L++ L  D ++   + +V+ L  + D  ++A   +++   A
Sbjct: 380 KIPTVADLRARRLELTRAALRESLLTDDLE-PYRVVVETLSDEFDVMEVAMAAVKLAQEA 438

Query: 427 GLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           G  A   EEI  V+    R+      R  +   G     +G +   L VG +     + L
Sbjct: 439 GGAAGDEEEIPEVAHRPPREGRDGGPRRERRAAGP--PPEGMTRLFLGVGRRAGVRPQDL 496

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV---SADGV-DLLRRTV 525
           +  +   S +  + IGAI +    + VEV   +AD V D LRRT 
Sbjct: 497 VGAIAGESSLRGRDIGAIEIADRFSLVEVPEHAADEVIDALRRTT 541


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  234 bits (597), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL   +   
Sbjct: 44  ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQMAELRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 224 FSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 220/377 (58%), Gaps = 12/377 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L  N+
Sbjct: 96  PRIV-ERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNE 154

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           +      PLA+ +APTRELA QV +E    + ++  +  +C+ GGV + ++ R L  G  
Sbjct: 155 KNGSGRNPLAIILAPTRELARQVEKE----FRESAPLDTLCVYGGVPISQQMRTLNYGVD 210

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R   LN+S ++ +VLDEAD+ML +GF + +E I++  P+ R+ ++FS
Sbjct: 211 VVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFS 270

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           AT+   I  L   Y KD V +++   SE +    I   +++     + + +  +++ H  
Sbjct: 271 ATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHAD 330

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +    +   AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 331 GGKCIVFTQTKREADRLAYAMGRS-YACQALHGDISQNQRERTLSGFRDGRFNILVATDV 389

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LV+H E+ ++ E  +HRSGRT RAG+KG+++ +      R  + +  E 
Sbjct: 390 AARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGI--EQ 447

Query: 364 NVSVVWEPAPSVEAIRE 380
           ++   +   P V A  E
Sbjct: 448 DIGCRFTELPKVAATDE 464


>gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
 gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
          Length = 491

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V ++R  G K  I
Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR ++ L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|218512664|ref|ZP_03509504.1| ATP-dependent RNA helicase protein [Rhizobium etli 8C-3]
          Length = 173

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 135/173 (78%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           L+ GAHIVVGTPGRLCD IR + L++S LKA VLDEADEMLDLGFR+D+EFIL
Sbjct: 121 LERGAHIVVGTPGRLCDPIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFIL 173


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 167/513 (32%), Positives = 261/513 (50%), Gaps = 21/513 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    AE D   
Sbjct: 34  ALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGRAEGD--- 90

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P++L + PTRELAVQV           G  V    GG  + R+ R L +G  +VV 
Sbjct: 91  ----PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVDVVVA 146

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P  R+ ++FSAT+ 
Sbjct: 147 TPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSATMP 206

Query: 191 PAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             I  LA+ +  D VR+ I  E     +   +   A +VA + +  A+  +L       A
Sbjct: 207 ARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPTAA 266

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG
Sbjct: 267 IVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARG 326

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +
Sbjct: 327 LDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRI 386

Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423
             +  P+V  +R R     Q  L++ L  D +    + +V+ L  + D  ++A   +++ 
Sbjct: 387 AIDKIPTVADMRTRRLELTQGALRESLLEDDLD-PYRAIVESLTDEFDLVEVALAAVKLA 445

Query: 424 HRA---GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           H A   G    EEI  V +   R+   +     +  G +R    G++   + +G +    
Sbjct: 446 HEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRRAGVR 505

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + L+  +   + I+ + IG+I +    + VEV
Sbjct: 506 PQDLVGAITGETRISGRDIGSIEIADRFSLVEV 538


>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 459

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 135/343 (39%), Positives = 199/343 (58%), Gaps = 2/343 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           AL+E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL   N+  SPA
Sbjct: 24  ALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQKLLPLANNSTSPA 83

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L+ G  ++V T
Sbjct: 84  KHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTPHLKTGVEVLVAT 143

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  K L ++ ++ +VLDEAD MLD+GF  D++ IL   PK+R+ LMFSAT S 
Sbjct: 144 PGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNLMFSATFSN 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA ++      + +A  N  + ++  +   VA SD++  ++ +LR   AK  IVF 
Sbjct: 204 EIKKLADDFLTKPQLIEVARSNATNDNVTQKVYQVAQSDKEALLIQLLREADAKQVIVFT 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + SR ++ L        A+ G+ +QQER  AL   + G     IATDVAARG+D+ 
Sbjct: 264 KTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTVSALIATDVAARGLDIS 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +L +VI+ E+ S PE+ +HR GRTGRAG  G+++  +  + ++
Sbjct: 324 ELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEK 366


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 255/503 (50%), Gaps = 14/503 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +QE  +   L   DV+  AQTG+GKT+AFG  L S +       S  
Sbjct: 17  KAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKITP-----SQR 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ ++PTRELA+Q+  E+E +    G  +    GG  + R+ R ++ G  I+VGTP
Sbjct: 72  KLPQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKGIDIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +R   L ++ +K VVLDEADEML++GF +DIE IL+     R+ ++FSAT+   
Sbjct: 132 GRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTILFSATMPAG 191

Query: 193 ITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  +A+NY  D    V + S+    + +      V   DR  A+  ++     +  I+FC
Sbjct: 192 IKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVANVQTGIIFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ SV   T+ + +  + V A+ G+LSQ  R N L+  + G     IATDVAARGID+ 
Sbjct: 252 RTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIATDVAARGIDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++  VI+ EL  + E+ +HR GRTGRA ++G +  +I    +    ++ R    S+    
Sbjct: 312 NVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQIERVTKSSITKAT 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
            P+++ I E     ++      D I     K    L+ + DP  +A        A L   
Sbjct: 372 IPTLQEISEAKIGTLVSK--VEDQILAGNHKKFKQLVNEIDPTMLAD-----FTAALMYM 424

Query: 432 EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491
                +     RD  ++ S   +   G R N K  +   ++ GS  + +A  ++      
Sbjct: 425 TFQEQLGYDYKRDTIQEASEGKRRERG-RGNNKDYTRIFITAGSMDRVKAPQIVNFFVSK 483

Query: 492 SGINRQSIGAIRVQPDLTFVEVS 514
           +G+ ++ IG I ++   TFV+++
Sbjct: 484 AGVRKEDIGDIDIKRKFTFVDIN 506


>gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
           Precursor
 gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
 gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
 gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
 gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
 gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
 gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
 gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
 gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 748

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              ++        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + ++
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      IVF  T+      +  L+  +    AL G++SQ +R   L   R G+  V
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R   
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            L R+      +   P+V  + E  A +++
Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493


>gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
 gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
 gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 747

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              ++        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + ++
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      IVF  T+      +  L+  +    AL G++SQ +R   L   R G+  V
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R   
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            L R+      +   P+V  + E  A +++
Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493


>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 529

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 258/517 (49%), Gaps = 40/517 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   + +Q   +   +  KD++  AQTG+GKT AFG+ +   +  +N +  
Sbjct: 15  IQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  + + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G  +++
Sbjct: 75  ------GIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K + +  +  V+LDEADEML++GFR+DIE IL+  P++R+ ++FSAT+
Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + K +QK+A  + +  +     +I+     V   +++  +  +L  +  K +++
Sbjct: 189 PKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLTRLLDIYTPKLSVI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +ATDVAARGID
Sbjct: 249 FCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + R     +  
Sbjct: 309 VDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368

Query: 370 EPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +  PS+  +       +L++           + +++I   E+K+ D      D   +AA 
Sbjct: 369 QKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAI---EEKVNDSDYTAMD---MAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL+++                +G     +    F  G    +   G     +++G KQKA
Sbjct: 423 FLKLY----------------TGMKDENESEDEFDFGDTGAEE-PGMVRLFINIGKKQKA 465

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               ++  L   SG+  + IG I +    TFVEV  +
Sbjct: 466 RPGDILGALAGESGMPGKLIGTIDMFDKYTFVEVPKE 502


>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
          Length = 748

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 223/390 (57%), Gaps = 12/390 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              ++        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR
Sbjct: 225 LTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + ++
Sbjct: 285 QSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDL 344

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      IVF  T+      +  L+  +    AL G++SQ +R   L   R G+  V
Sbjct: 345 ITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTV 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R   
Sbjct: 404 LVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVR 463

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            L R+      +   P+V  + E  A +++
Sbjct: 464 SLERDVGCHFEFISPPTVGDLLESSADQVV 493


>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
          Length = 617

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 180/586 (30%), Positives = 285/586 (48%), Gaps = 52/586 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L       N+   
Sbjct: 17  ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNVDP 70

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  IVV
Sbjct: 71  SVRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L+ +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + K + KD   V + S      DI  ++   A   + +A+V  L       AI+
Sbjct: 191 PEAIRRITKRFMKDPQEVRMQSSITTRPDIS-QSYWTAYGRKSDALVRFLEAEDFDAAII 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 250 FVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 310 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 369

Query: 370 EPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422
              P+ E + +R  AQ   +    L+S   D+ +    LLAK  PE+      +AA  L+
Sbjct: 370 VELPNAELLSQRRLAQLAAKVQQQLESSDLDQYR---ALLAKMQPEEELDMETLAAALLK 426

Query: 423 I---HRAGLCAPEEITP------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +    R  +  P+   P           G DR R + R          +      + + V
Sbjct: 427 MAQGERPLILLPDAPRPQRREFRDRDERGGDRPRRERR----------DVGEMQLYRIEV 476

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDK 529
           G     E R ++  +     I+ + IG I++    + +E+      + +    RT  L+K
Sbjct: 477 GRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVLQHFTRTRILNK 536

Query: 530 GIQLKYLGGEKP-----------DFRGYKSSGFKSKNSQDGATKRF 564
            + ++ LG  +P           DF G +    +  N + GA +RF
Sbjct: 537 PMNMQLLGDAQPHERTERRSGGRDFGGERRGNREGGNREGGAPRRF 582


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score =  234 bits (596), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 264/520 (50%), Gaps = 47/520 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A++  G+  ++ +Q   +  +L  KDV+  AQTG+GKT AFG+ +         
Sbjct: 13  PEIL-KAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQ------- 64

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
           +  P    P A+ + PTRELA+QV  E+  L AK  + V +    GG  + ++ R L+ G
Sbjct: 65  KVDPKLKKPQAIVLCPTRELAIQVADEIRKL-AKYMSSVKILPIYGGQEISKQIRSLKAG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DH+R K +   ++  VVLDEADEMLD+GFR+DIE IL+  P++R+ ++
Sbjct: 124 VQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQTML 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ YQ++   + +  +     +I      V   ++   +  +L  +  
Sbjct: 184 FSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPKNKSEVLSRLLDIYDP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V      L    +    L G++ Q  R   +   R G+  + +ATDVA
Sbjct: 244 KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+ D++ V + +L  + E  +HR GRTGRAGR GM+  FV+ + + +  + + R  
Sbjct: 304 ARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKD-IRRYC 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--PEKIAAG 419
              +  +P PS+  + E   ++I    D    D        MV+  + + D     +AA 
Sbjct: 363 KAKIKAQPIPSLNDVTETRVEKIFDRIDHYIEDQNLNKYIDMVEEFVNEKDYTAMDVAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------KGSSWFSLSV 473
           FL           EI  +    G+D            G ++++F      +G     +++
Sbjct: 423 FL----------AEI--LGTADGKD-----------AGSNKEDFGDTGAEEGMVRLFINI 459

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G KQ      ++  +   SGI+   +G I +    TFVEV
Sbjct: 460 GKKQGIRPGDILGAIAGESGISGNLVGTIDLYDKYTFVEV 499


>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 529

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 257/514 (50%), Gaps = 40/514 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   + +Q   +   +  KD++  AQTG+GKT AFG+ +   +  +N +  
Sbjct: 15  IQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGIPMLEKIDPKNKKLQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  + + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G  +++
Sbjct: 75  ------GIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQLII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K + +  +  V+LDEADEML++GFR+DIE IL+  P++R+ ++FSAT+
Sbjct: 129 GTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEGVPEERQTVLFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + K +QK+A  + +  +     +I+     V   +++  +  +L  +  K +++
Sbjct: 189 PKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVLTRLLDIYTPKLSVI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +ATDVAARGID
Sbjct: 249 FCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + R     +  
Sbjct: 309 VDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQRYCKTKIYA 368

Query: 370 EPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +  PS+  +       +L++           + +++I   E+K+ D      D   +AA 
Sbjct: 369 QKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAI---EEKVNDSDYTAMD---MAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL+++                +G     +    F  G    +   G     +++G KQKA
Sbjct: 423 FLKLY----------------TGMKDENESEDEFDFGDTGAEE-PGMVRLFINIGKKQKA 465

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               ++  L   SG+  + IG I +    TFVEV
Sbjct: 466 RPGDILGALAGESGMPGKLIGTIDMFDKYTFVEV 499


>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 508

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 197/340 (57%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL   +   
Sbjct: 53  ILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPLASTSA 112

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 113 SPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRRGVEIL 172

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  +++ ++ +VLDEAD MLD+GF  D++ IL+  P +R+ L+FSAT
Sbjct: 173 IATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQRQTLLFSAT 232

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y +D V + +A  N   S++      VA  D+  A+V ++R    K  I
Sbjct: 233 FSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQLIRQRELKQVI 292

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  K L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 293 VFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 352

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 353 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 392


>gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
 gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
          Length = 637

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 172/540 (31%), Positives = 276/540 (51%), Gaps = 46/540 (8%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55
           MK FE +   P+ I +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT AFG
Sbjct: 1   MKTFEELGVSPE-IRKAIEEMGYENPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114
           L L   +            P AL + PTREL +Q+  +L ++    T + +    GG S+
Sbjct: 59  LPLIQKIDVSR------RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G HI+V TPGRL D +  K   +  +  VV+DEADEML++GF D I  IL+
Sbjct: 113 ESQIKSLKAGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILE 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  LMFSAT+SP I  +AK Y  DA  + I ++N    ++ + A  V   D+  A
Sbjct: 173 KVPEERNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVHHIAYTVHAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++ ++     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRVVDFYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCH 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKG 352

Query: 352 MQRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--- 407
             R  ER+ ++  ++  +    P+ + I E+   +++ D   ++ ++ DE+++   L   
Sbjct: 353 KMREIERIIKKKFDLGTL----PTGKEICEQQLIKLIDD---IEKVKVDEEEIETFLPGI 405

Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
                 L+K D  K  ++  F R       A E   P     G ++ R+  +  K  G  
Sbjct: 406 YRKLEWLSKEDLIKRVVSMEFNRFLDYYKNAAEIEQP----KGNEK-RESQKERKDHGSD 460

Query: 460 RDNF-----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           R+       KG +   L++G      A  ++ ++ R+    R  IG I +  + +F E++
Sbjct: 461 REKISRKAEKGYTRLFLNLGKTDGFYANQIIELINRNLKKERIEIGRIDLMQNFSFFEIA 520


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 135/350 (38%), Positives = 204/350 (58%), Gaps = 6/350 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L   D++ +AQTG+GKT AF L +   +L   ++  
Sbjct: 39  IQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQQILRHASNSA 98

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELAVQV          T +  AV  GGV +  +   L+NG  I+
Sbjct: 99  SPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEIL 158

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DHI  K  N+S ++ +VLDEAD MLD+GF  D++ I+D  P +R+ L+FSAT
Sbjct: 159 IATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPAQRQTLLFSAT 218

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGA 244
            SP I  LA++Y +  V V +A +N     +     +V+  D+  AIV +L    R   +
Sbjct: 219 FSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKVLEARTRLGLS 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F ++R   ++  + L     +  A+ G+ SQ ER+  L   + G     +ATDVA
Sbjct: 279 RQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGAIEALVATDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARG+D+PD+  VI+ EL  N E+ +HR GRTGRAG KG ++ ++  + +R
Sbjct: 339 ARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKR 388


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 171/554 (30%), Positives = 280/554 (50%), Gaps = 35/554 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D       P  L +APTRELA+QV    E    YAK   +V +  GG     + R L+ G
Sbjct: 69  D--LDKKYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTL-YGGQRYDIQLRALRQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHIR   L++S+L+ +VLDEADEML +GF DD+E ++   P++ +  +
Sbjct: 126 AQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQHQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K + KD   + I S    + DI      V    +++A++  L     
Sbjct: 186 FSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFLEVEKF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVA
Sbjct: 246 DAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFR 361
           ARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E+L +
Sbjct: 306 ARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNIEQLTK 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    V       ++A R    +  +   L    +      + D+  A  D E IAA  L
Sbjct: 366 KPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDIAAAML 425

Query: 422 RIHRAGLCAPEEITPVSLVSGRD-------------RFRDDSRAFKVGGGSRDNFKGSSW 468
            + +      + I P   +  R                 +   A + G G+    +    
Sbjct: 426 MLLQG---KQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTP---QAMDL 479

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG    AE R ++  +     IN + IG I++  D T +E+      + + +  +T
Sbjct: 480 YRIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKT 539

Query: 525 VKLDKGIQLKYLGG 538
             ++K +Q+ ++G 
Sbjct: 540 RVMNKQMQMSFVGA 553


>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 510

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY + T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 44  ILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R  G K  I
Sbjct: 224 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 390


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 271/520 (52%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S+L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISSL-CD 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           N++        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 69  NEK---KKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+P++++ +
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183

Query: 184 MFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+  AI  LA NY K+ V  + I  ++     I      V   D+  AI  I+   
Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 TKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +   + +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSS 495


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 200/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 151/423 (35%), Positives = 227/423 (53%), Gaps = 13/423 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +   N           L
Sbjct: 20  GFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKIDVNNRNVQ------GL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+Q   EL  L     V V V  GG  + R+ R L++  HIVVGTPGRL DH
Sbjct: 74  VIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIRALKDAPHIVVGTPGRLLDH 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + H++ +VLDEADEML++GF DDIE I+   P +R+ L+FSAT+ PAI  +  
Sbjct: 134 IKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLLFSATMPPAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V I +     S I+   V     ++ + +  +      +  I+F  T+  V 
Sbjct: 194 RFMKEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPELTIIFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    ++   + G+LSQQ+R + L+  + G+  V +ATDVAARG+D+  +  V +
Sbjct: 254 ELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375
            ++  +PE+ +HR GRTGRAG++G+SV F+ P  M   R  E L ++A   +   P  + 
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKKAMTPL--RPPTNA 371

Query: 376 EAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRAGLCAPEE 433
           EA   +    I +    +D+   D  +K    LL  +  E +AA FL+ + +     P +
Sbjct: 372 EAFEGQIKASIDEVGSIVDANGLDRYEKAAAQLLETYTAEDLAAAFLKSVTKDADEVPVK 431

Query: 434 ITP 436
           ITP
Sbjct: 432 ITP 434


>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 571

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 199/344 (57%), Gaps = 2/344 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   SPA
Sbjct: 115 AIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSASPA 174

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I++ T
Sbjct: 175 RHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEILIAT 234

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT SP
Sbjct: 235 PGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSP 294

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  IVFC
Sbjct: 295 EIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFC 354

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+D+ 
Sbjct: 355 NSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIA 414

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 415 ELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 458


>gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 491

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V ++R  G K  I
Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQLIRERGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           B7210]
          Length = 399

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 205/356 (57%), Gaps = 11/356 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+   G+  +T VQE  +   L  +DV+  A TG+GKT AFG+ +A       + 
Sbjct: 10  EAIHKAVERMGFAEMTEVQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVA-------EH 62

Query: 69  FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             PA  AP A+ +APTRELA Q+  EL  L      V  VC+ GG ++ ++ + L  G  
Sbjct: 63  IDPALKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQVVCVYGGANMEKQAKRLAEGCQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   +++ H+  VVLDEADEML++GF  D++ I+     ++ + MFS
Sbjct: 123 IVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKARKSLSMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQKDA  + +  +      I    +  +  ++ + +  I+   G K 
Sbjct: 183 ATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ ER+  +Q  RDG+  V +ATDVAAR
Sbjct: 243 VMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGKLNVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++  + E+  HR GRTGRA ++G+S +F +P+  ++R + L R
Sbjct: 303 GIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/421 (35%), Positives = 234/421 (55%), Gaps = 20/421 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E G+   T +Q   +   L  +D+L  AQTG+GKT AFGL L        DR  P 
Sbjct: 16  KALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLV-------DRSDPQ 68

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            A + AL +APTRELAVQV   +      +GV V    GG  + R+ R L+ GA IVVGT
Sbjct: 69  DARVQALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAGAQIVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +R   L++S L+ +VLDEAD+MLD+GF ++++ ILD++P +R+++ FSAT+  
Sbjct: 129 PGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVFFSATLPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  LA  + +  + + + +E R    I  R   V   +R  A+  +L      +A++F 
Sbjct: 189 SIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAEDPASALIFT 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L +   +  AL G+L+Q  R   L   R  +  V +ATDVAARG+D+ 
Sbjct: 249 RTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAARGLDIA 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL  VI+ ++  + E+ +HR GRTGRAGR G+++ F +P + + R   + R    ++V  
Sbjct: 309 DLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTD-RYRLRLIERATGSTLVPA 367

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPEKIAAGFLR 422
             PS   I+ R  +R+++       +Q DE        +++V  L  + D   IAA FL+
Sbjct: 368 KIPSAGEIQVRRTERLVEQ--LRRQLQADESDPSLVLYREVVGQLREEFDLGDIAATFLK 425

Query: 423 I 423
           +
Sbjct: 426 L 426


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 166/557 (29%), Positives = 279/557 (50%), Gaps = 50/557 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +Q   +   L   D++  AQTG+GKT AFG+     +  + D      
Sbjct: 18  AIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKIDPQIDSIQ--- 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L ++PTRELA+Q   EL   L  K G+ +    GG  + R+   L+    I++GTP
Sbjct: 75  ---VLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKRPQIIIGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R + + +  LK +VLDEADEML++GFR+DI+ IL+  P+ R+ ++FSAT+   
Sbjct: 132 GRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILFSATMPKE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L K YQK+ V + IA +      I+   + V  S +   +  ++  +  K ++VFC+
Sbjct: 192 ILELTKKYQKNPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIKLSLVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T  L    F   AL G++ Q+ R   + + R G   + IATDVAARGID+ D
Sbjct: 252 TKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNFDILIATDVAARGIDVDD 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +E V + +L ++ E  +HR GRTGRAGR G +   I      +   + R    +++    
Sbjct: 312 VEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYKLRDIQRYTKSTIIPMKP 371

Query: 373 PSVEAIRERDAQRILQD-----------------PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           PS+  + E+    IL+                    F+D+I  + ++  D  ++  D   
Sbjct: 372 PSLNEVEEKKMSNILKALKENLKDESVSKFASHIERFIDTINNESEEHDDNFVSSLD--- 428

Query: 416 IAAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           IA   L+++  ++G          S+V+  D   +        G S+D  +      +++
Sbjct: 429 IAGALLKMYGEQSGNLP-------SVVNEIDNAVE-------PGSSKDMVR----LFINI 470

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           GS  K + + ++  L  S+G+  + +GAI +    +FVEV  +    + +++K +  I+ 
Sbjct: 471 GSDSKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKEFAPEVLKSMK-NYTIKG 529

Query: 534 KYLGGEKPDFRGYKSSG 550
           K +  EK + R  K SG
Sbjct: 530 KRINIEKSNAR--KKSG 544


>gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 645

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 225/413 (54%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +   N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++K Y  +A  + I  +N   +++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNEGTNNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   AL GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +
Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFM 402


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 202/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKARQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y  +   + +A  N   +++      +A  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKLIRDRALKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  ++L        A+ G+ SQ ER  AL+  + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 211/357 (59%), Gaps = 10/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + EA+S+ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +  E 
Sbjct: 70  LPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTE- 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                A  P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 129 -----ARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 183

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 184 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 243

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y  +   V + SE R + +I  R +L     + +A   IL      
Sbjct: 244 SATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVIDYD 303

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+ +       L E  +   A++G+++QQ+R   +  ++DGR  + +ATDVAA
Sbjct: 304 AIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 363

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P+   M R  ER+
Sbjct: 364 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERV 420


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 138/347 (39%), Positives = 204/347 (58%), Gaps = 10/347 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L S L A + R      
Sbjct: 19  LASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QVG+EL  L  +     ++ +C GGV    +   L++GAH+V+GTP
Sbjct: 75  --ALVLCPTRELADQVGKELRRLARFTDNIKILTIC-GGVPFGPQLGSLEHGAHVVIGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P KR+ L+FSAT   +
Sbjct: 132 GRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDS 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q++ V V++  E      I+     V    R  A+  IL ++  ++A++FC+
Sbjct: 192 IAAMSAGVQREPVEVSV-DEVHGEGAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         LA   +  +A+ G+L Q+ER   L    +  A V +ATDVAARG+D+ +
Sbjct: 251 TKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           L  VI+ EL+ NPE   HR GRTGRAG +G++V ++     R  E +
Sbjct: 311 LSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIETI 357


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 165/534 (30%), Positives = 266/534 (49%), Gaps = 44/534 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   T +Q   +   L  KDV   AQTG+GKT AFG+ +   L  +N      
Sbjct: 18  QAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQ-- 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL ++PTRELA+Q   E   L   K G+ V    GG  + R+ R L+    +V+GT
Sbjct: 76  ----ALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQLRALKGTVQVVIGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI+   L++  +   +LDEAD+MLD+GFR+DIE I   +PK R+ ++FSAT+  
Sbjct: 132 PGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPKDRQTILFSATMPQ 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +Q+D   V I  +      I+   + V   D+  A+   L  +  + A+VFC
Sbjct: 192 PILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRTLDMNNPELALVFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +V      +    + V AL G++ QQ+R   +   R G   V IATDVAARGID+ 
Sbjct: 252 NTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGIDVD 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           D+++V + ++  + E  +HR GRT RAGR G SV FV P+ + +  + + R A + +   
Sbjct: 312 DVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD-IQRYAKIQIAKT 370

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEK---KMVDVLLAKH---DPE----- 414
           P P+++ + E   Q      +FLD ++     G+ +    +V+ LL      D E     
Sbjct: 371 PLPTLDDVAEMKQQ------IFLDKVRDIMAAGNLELYLPLVEQLLETETDVDSESTSEI 424

Query: 415 ---KIAAGFLRIHR---AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-GSS 467
              ++AA  L++H          EEI P+            S  F  G       + G  
Sbjct: 425 TSIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPS------SSETFTPGTVENSGAEPGMV 478

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            F +S+G  Q+   + ++        I   SIG I +  + ++V+V  +  +L+
Sbjct: 479 RFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDVPLEHANLV 532


>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           DM98]
          Length = 409

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
          Length = 414

 Score =  233 bits (595), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           112]
          Length = 400

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 212/368 (57%), Gaps = 16/368 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           GY ++T +Q A L    + KD++  A+TGSGKT AF L L        D+ +P      A
Sbjct: 23  GYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLL-------DKLNPRDFGTQA 75

Query: 78  LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA QV  E+  L  Y +   VV +C GG S+  +   L++GAHIVVGTPGR+
Sbjct: 76  LVLCPTRELATQVSGEIRRLARYRQNIKVVTLC-GGQSIGPQIGSLEHGAHIVVGTPGRI 134

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+R K LN++ +  +VLDEAD ML++GF +DI  I++ +P  R+ L+FSAT    I  
Sbjct: 135 SDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTLLFSATYPDDIEA 194

Query: 196 LAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           L+  +QK   R+++ +    H+D  ID +  +   S R + +V +L +   + A+VFC+T
Sbjct: 195 LSARFQKQPERISVET---MHNDQQIDQQFFVCQKSARLDGLVTLLNHFAPQTAVVFCNT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T  L E   + +AL G++ Q++R   L   R     V +ATDVAARG+D+ DL
Sbjct: 252 KQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAARGLDIDDL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +V++ EL    E  +HR GRTGRAG+ G+++ +   + Q + E++ +        +P  
Sbjct: 312 PVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIRQLLQQEPETKPID 371

Query: 374 SVEAIRER 381
           S+    ER
Sbjct: 372 SISVRGER 379


>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
 gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 478

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 132/334 (39%), Positives = 194/334 (58%), Gaps = 2/334 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASG 355


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 172/518 (33%), Positives = 265/518 (51%), Gaps = 37/518 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+   + +Q   +   L  +D++  AQTG+GKT AF + L   L A   
Sbjct: 17  PEIL-RAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLMRLQARR- 74

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTRELA+QV  E   +   T   V    GG S+ R+ + LQ G  +
Sbjct: 75  -----GWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKTLQRGVDV 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+  K L +  L+AVVLDEADEMLD+GF DDIE IL+++P  R+ L+FSA
Sbjct: 130 VVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSRQTLLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   I  LA+ Y +  V V+I  E     DI      +   D   A+  IL     + A
Sbjct: 190 TIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRILDAEAVERA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + L    +    + G+L Q +R+  +   R+G   + +ATDVAARG
Sbjct: 250 IIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREAN 364
           ID+ ++  VI+ +   +PE+ +HR GRTGRAGR G ++  V P+ +   R  +RL +   
Sbjct: 310 IDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQRLVK--- 366

Query: 365 VSVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           V +   P PS+  + +R      QR+L+  L   ++    + +V  L  ++DP ++AA  
Sbjct: 367 VRIERHPIPSLADVVDRRMEIWRQRLLE-ALGTGNLT-PYRTLVQELSGEYDPMEVAAAA 424

Query: 421 LRIHR--AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           L++     G   P+   P              RA K GG   +  +G   F +++G  Q 
Sbjct: 425 LKLLARDQGTAGPDVRPP--------------RAEKFGGTGAE--EGMVRFFMNIGRNQG 468

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                ++  +   + I    IGAI +  + TF+EV  +
Sbjct: 469 VTPADIVRGVAEQARIPGGVIGAIDIYDNFTFLEVPEE 506


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 230/416 (55%), Gaps = 17/416 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   + ++L E G+ + T +Q+  +   L   D++  AQTG+GKT AFG+ +   + 
Sbjct: 15  FNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIENI- 73

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             N R     A   + + PTRELA+QV  EL  +    GV      GGVS+ R+   L+ 
Sbjct: 74  --NSRERGVKA---IVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILKR 128

Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G   IVVGTPGR+ D I    L +  ++  VLDEAD+MLD+GF +DIE IL  +P++++ 
Sbjct: 129 GRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQT 188

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  L  NY K   +     +N     +  R + V   D+  A+  +L+ H
Sbjct: 189 LLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKEH 248

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + IVF  T+   +   K L +      A+ G+LSQ++R N ++  ++G+ +  +ATD
Sbjct: 249 QGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVATD 308

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LVI+ EL  NPE+ +HR GRTGRAGR+G ++ ++  N +RR  R+   
Sbjct: 309 VAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIYRIKGL 368

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKI 416
            ++    +P    E  +  D + + QD L  D  +  EK  K+   LL + DPE++
Sbjct: 369 KHI----KP----EKFKANDLRDLKQDLLSADVGKVSEKIRKVAKELLRERDPEEV 416


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 201/336 (59%), Gaps = 10/336 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L S L A + R      
Sbjct: 19  LASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QVG+EL  L  +     ++ +C GGV    +   L++GAH+V+GTP
Sbjct: 75  --ALVLCPTRELADQVGKELRRLARFTDNIKILTIC-GGVPFGPQLGSLEHGAHVVIGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P KR+ L+FSAT   +
Sbjct: 132 GRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQTLLFSATYPDS 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q++ V V++  E      I+     V    R  A+  IL ++  ++A++FC+
Sbjct: 192 IAAMSAGVQREPVEVSV-DEVHGEGAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         LA   +  +A+ G+L Q+ER   L    +  A V +ATDVAARG+D+ +
Sbjct: 251 TKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  VI+ EL+ NPE   HR GRTGRAG +G++V ++
Sbjct: 311 LSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLV 346


>gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 655

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 198/353 (56%), Gaps = 12/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   +   I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
           L   +            P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+ 
Sbjct: 61  LIQQINV------SKRIPQSLILCPTRELCLQIAGDLN-DYSKYINGLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL  
Sbjct: 114 SQIRALKQGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   +++ +    V   D+  A+
Sbjct: 174 VPQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTNNVKHVVFCVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346


>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           14]
          Length = 409

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           91]
          Length = 411

 Score =  233 bits (594), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 133/347 (38%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKLIRDRSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 213/370 (57%), Gaps = 9/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++E G+V  + +QE  +   L+ +DV+  AQTG+GKT AF L +   L  +NDR  
Sbjct: 29  ILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHNL--KNDR-- 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              +  AL I PTRELA+Q+  E+ +   K+     +CI GG S+ ++   L+    +++
Sbjct: 85  ---SVEALIITPTRELAMQISDEI-FRLGKSSRTRTICIYGGQSIRKQCELLEKRPQVMI 140

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K L   + K VVLDE+DEMLD+GF DDIE I D  P   ++L+FSAT+
Sbjct: 141 ATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILLFSATM 200

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA    +D   ++IA  N  ++DI  R  ++   +R+ AI+ +L       +I+
Sbjct: 201 PPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKENHTKSII 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +  V    + L E  ++   L G++ Q+ R  +++  +  RA V +ATDVA+RG+D
Sbjct: 261 FMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVATDVASRGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  V +  L  N E+ +HR GRTGRAG+KG+++ ++     +  +R+ +E + ++  
Sbjct: 321 ISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQKEIDSTIEL 380

Query: 370 EPAPSVEAIR 379
              P +   R
Sbjct: 381 YEIPDMNEDR 390


>gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 908

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 203/343 (59%), Gaps = 9/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL E GY     VQ A+  P +  +DV+V ++TGSGKT  FG+ +   + A   
Sbjct: 71  PELL-QALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQHIDA--- 126

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
               +    AL +APTRELA+QV RE+  L    G+ +    GG  +  +   L  GA +
Sbjct: 127 ---ASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAGAQV 183

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMF 185
           V GTPGR+ DH+R K L+  +++ ++LDE DEML +GF+++IE I++  P K  R+ ++F
Sbjct: 184 VSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTVLF 243

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  +A+ +  D   +++++ N    DID+   +V+   R   ++ +LR     
Sbjct: 244 SATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAESPD 303

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC+TR   +   K L    +   A+S +L+Q++R   ++ MRD      +ATDVAA
Sbjct: 304 SAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDVAA 363

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ DL  VI+     +PE  +HR+GRTGRAG+ G+++ ++
Sbjct: 364 RGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLV 406


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 274/542 (50%), Gaps = 47/542 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +A+ E GY   + +Q   + P L  +D+L  AQTG+GKT AF L L S L   N
Sbjct: 17  IAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSRL---N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           DR      P  L + PTRELA+QV   ++    + K   V+ +  GG S+  + R LQ  
Sbjct: 74  DR---QKTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIY-GGQSMGIQLRQLQRN 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGR+ DHIR   L + +L+++VLDEADEML +GF DD+E IL  +PK R++ +
Sbjct: 130 PQVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVAL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ Y  + V V+I S+      I+ R   V    + +A+  IL     
Sbjct: 190 FSATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLHKLDALTRILEVEEF 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ S     + L    +    L+G+++Q  R   ++ M+ G+  + +ATDVA
Sbjct: 250 DGMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILVATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +   
Sbjct: 310 ARGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAIEKATK 369

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH--DPEKIAA 418
            ++     PS E I +R      Q     ++I+  +    +K++     +H  DP ++AA
Sbjct: 370 QTITRMQLPSSEDIADRRVMSFKQQ--MTETIESQDLAFFEKLITSYQEEHNADPVEVAA 427

Query: 419 G---FLRIHRAGLCAPEEITPVSLVSGRDRFRD----DSRAFKVGGGS------------ 459
                ++ HR        + PVS VS R + R+    DSR       S            
Sbjct: 428 ALAFLVQKHRP-------LKPVSHVSERKQPRERADRDSRQTNREPRSERPERAPRAPRT 480

Query: 460 RDNFK---GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           R   K   G   + + VG++   E + L+  +   +G+  Q IG I +  D +FV++  D
Sbjct: 481 RAEHKPEEGMKTYRVEVGAEHNVEPKHLVGAIANEAGLESQLIGRISIMDDHSFVDL-PD 539

Query: 517 GV 518
           G+
Sbjct: 540 GM 541


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 181/577 (31%), Positives = 285/577 (49%), Gaps = 44/577 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  AL E GY   + +QE  + P L   DV+  AQTG+GKT AF L   S +    D
Sbjct: 137 PRVLS-ALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSRMAELAD 195

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +     L +APTRELA+QV      +        V    GG     +   L+ GA 
Sbjct: 196 INGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQ 255

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +FS
Sbjct: 256 VVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALFS 315

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  +A+ Y  D   V + ++    ++I  R + V  S + +A+  +L       
Sbjct: 316 ATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYDG 375

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+         L    FQ  A++G++ QQ R   +  +RDGR  + +ATDVAAR
Sbjct: 376 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 435

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363
           G+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+   M R+ E+  R+ 
Sbjct: 436 GLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQK 495

Query: 364 NVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EK 415
                 EP   P+ + +     QR  +     ++I+ ++    +K+++    +HD   E 
Sbjct: 496 -----VEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAED 548

Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           IAA    I + G    L   ++I   S     D      R  K G    D  +G   + L
Sbjct: 549 IAAALAVIAQQGRAFFLDENDDIARKSRAFADDTKDRGKRGPKKGRNHSD--EGMVNYKL 606

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT--- 524
           +VG   + +A  ++  L    GI    IG+I ++   T V +  D      D LR T   
Sbjct: 607 NVGRASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPKGFFDRLRDTKIA 666

Query: 525 -----VKLDKGIQLKYLGGEKPDFR--GYKSSGFKSK 554
                ++ D+G Q    GG    FR    +  GF+S+
Sbjct: 667 GEFINIRKDRGPQ----GGGGRSFRRNDRRDGGFRSR 699


>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
          Length = 802

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 217/390 (55%), Gaps = 12/390 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q + EAL+ RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  +
Sbjct: 150 NLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIERLTKD 209

Query: 66  NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           N            P  L +APTRELA QV  E E+  +   +  A   GGVS   ++  L
Sbjct: 210 NKENKLLRQSRRLPRVLVLAPTRELAKQV--EKEFKESAPFLSTACIYGGVSYVSQQNAL 267

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D +  K L ++ ++ +VLDEAD+ML +GF +D+E ILD+ P +R+
Sbjct: 268 ARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLPAERQ 327

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240
            ++FSAT+   +  L++ +  + + +++  EN +      +   VA +   N+  +IL  
Sbjct: 328 SMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGD 387

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +      IVF  T+      +  L+  +    AL G++SQ +R   L   R+G+  
Sbjct: 388 LITVFAKGGKTIVFTQTKRDADEISLGLSSTI-ACEALHGDISQHQRERTLAGFREGKFS 446

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ +++LVIH E  ++PE  +HRSGRTGRAG++G+++ + P N +R+ 
Sbjct: 447 ALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKV 506

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             L  E      +   P  E + E   Q +
Sbjct: 507 RSLEHEVGCRFEYINPPRQEDVLETSTQHV 536


>gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 457

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 227/399 (56%), Gaps = 12/399 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N+   + +++ E GY +LT +Q A L   L+ +DVL  A+TGSGKT AFGL +  +L A
Sbjct: 7   QNLRPELLQSVEELGYTHLTDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGILQSLDA 66

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
                   +   AL + PTRELA QV  +L  L  +   V +    GGV ++ +   L++
Sbjct: 67  TR------TYTHALVLCPTRELADQVAEQLRLLARRMDNVKITTLYGGVPMNGQIATLKH 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VGTPGR+ DH+    +++  L+  VLDEAD MLD+GF D++E I    P+KR+ L
Sbjct: 121 RPHIIVGTPGRVMDHLMKHRVHLKELQQFVLDEADRMLDMGFYDELEVIFQHLPQKRQTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  ++   QK   R+   S +   + I+  A  V    RD A+  +L ++ 
Sbjct: 181 LFSATYPDTIAQISDAVQKAPQRIETQSLHTG-TKIEQIAYKVTDEHRDQAVAAVLSHYQ 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AIVFC T+A     T+ L +     VAL+G+L Q+ER+  L       A V +ATDV
Sbjct: 240 AQAAIVFCHTKAQTFALTEYLQQKDIAAVALNGDLEQRERTQVLTRFAHKSALVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +++VI+  ++  P+  +HR GRTGRA  +G++V ++ ++       +  EA
Sbjct: 300 AARGLDIDAVDVVINYTVTEEPDVYVHRIGRTGRADAEGLAVTLVSESEMAGLRAI--EA 357

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +  VV +P   +E++R   A RI+Q      SI G +++
Sbjct: 358 HAQVVLKP-KGIESVRYH-ANRIVQPAFATLSIDGGKRQ 394


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 167/542 (30%), Positives = 271/542 (50%), Gaps = 56/542 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +++ ++GY N T +Q A +   L  +DVL  AQTG+GKT AF L L S + + + D    
Sbjct: 18  KSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSMIDIDQRD---- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P  L +APTRELA+QV    + + +   G  V    GG S   + R L+ GAH+VVG
Sbjct: 74  ---PQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKRGAHVVVG 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR K LN+S LK +VLDEADEML +GF DD++++L+  P++R++ +FSAT+ 
Sbjct: 131 TPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIALFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A+++ K+   V I  +      I  R  +V+  ++ +A+  IL +      I+F
Sbjct: 191 AVIRKIAQSHLKNPQHVTIKDKTTTAPTIRQRFWMVSGRNKIDALTRILEFEPFDGMIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G++ Q +R   +  ++ G+  + +ATDVAARG+D+
Sbjct: 251 VRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAARGLDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +  N  V   
Sbjct: 311 ERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYSIEKATNQRVEQL 370

Query: 371 PAPSVEAI---RERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHD--PEKIAAGFLR 422
             P+ E I   R  D ++ + D L  D ++   G    +V+    +H+   ++IAA    
Sbjct: 371 EMPTTEDINNLRIADFKQRISDTLAADGLELFAG----IVEQYEQEHNVPAQEIAAALAF 426

Query: 423 IHRA----------GLCAPEEITPVSLVSGRDRFR-----------------DDSRAFK- 454
           + +           G     E  P       D+ R                 D  R  K 
Sbjct: 427 LAQGDKPLLIKDVPGTRPQREARPARFEEPEDKRRSMRNLRSERVEDFTAADDKPRREKP 486

Query: 455 ---VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
              +G   R    G   + L VGS   AEAR ++  +    G+  + IG I +    + V
Sbjct: 487 RREIGAPER----GKDRYRLEVGSNHGAEARNIVGAIANEVGLESEFIGQIHIADTYSTV 542

Query: 512 EV 513
           ++
Sbjct: 543 DL 544


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 141/399 (35%), Positives = 217/399 (54%), Gaps = 20/399 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+   GY   T++Q   +   L+ +DV+ +AQTG+GKT +FGL +   LL   N   SPA
Sbjct: 19  AIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQKLLPLANTSTSPA 78

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+  L ++PTRELA Q    L    A T + + V  GGV +  +   L+ G  I++ T
Sbjct: 79  RHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQAEALRKGVEILIAT 138

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  +  N++    V+LDEAD MLD+GF  DI  IL++ PKKR+ LMFSAT SP
Sbjct: 139 PGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALPKKRQNLMFSATFSP 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK------ 245
            I  LA N+  D V + +A +N   + I      V    + +A+V +L+  G        
Sbjct: 199 EIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVELLKTRGEDPDGKPL 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF + + +  R  + L +  F   A+ G+ +Q+ER   L+  +DG   + +ATDVAA
Sbjct: 259 QTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFKDGTLNIMVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L LVI+ ++   PE+ +HR GRTGRAG  G+++ ++    ++  + + +   V
Sbjct: 319 RGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTDKDKKSFDAIRKLTRV 378

Query: 366 SVV---WEPAPSVEAIRER---------DAQRILQDPLF 392
           +++    +P P   A   R          A R  +DP F
Sbjct: 379 NLIPQELDPEPRKRARFPRKFSSSTDAWKAPRKPEDPFF 417


>gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 409

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 194/339 (57%), Gaps = 2/339 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   L+A+N     A
Sbjct: 14  DTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAA 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL + PTRELA+QV +        T + V +  GGVS+  ++     G  +++ TP
Sbjct: 74  KAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   LN++ L  +V DEAD MLD+GF D+I+ +L   P +R+ L+FSAT+  +
Sbjct: 134 GRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLFSATLDDS 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           I + +KN  +D  R+ +A  N   + I+ R   +  SDR    V +++R    +  ++F 
Sbjct: 194 IFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFS 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V + T  L +      +  G+LSQ  R   LQ  + G  +V +ATDVAARG+D+ 
Sbjct: 253 RTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIA 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 313 ELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351


>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 543

 Score =  233 bits (593), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 264/521 (50%), Gaps = 33/521 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLA 64
           N+   + EAL ++ +V+ + +Q  ++   L+E+  L+  AQTG+GKT AF + +   ++ 
Sbjct: 7   NLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPILEKII- 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 P     AL +APTRELA QV  E+  L  K  V +    GG S+  + ++L+ G
Sbjct: 66  ------PTKKVKALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNLKKG 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ D I    L ++ L+  VLDEADEML++GF +DIE IL+ + + ++ML 
Sbjct: 120 VDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKKMLF 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  +AK +  +   + +  +       +     V   D+  A+  +L Y   
Sbjct: 180 FSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRREDKFEALCRVLDYKPD 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T++ V   T  L    +   A+ G+++Q  R  AL + ++    + +ATDVA
Sbjct: 240 FYGIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNILVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+ +L  VI+  +    ++ +HR GRTGRAG KG+++ FV PQ   R+  ++ RE 
Sbjct: 300 ARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQE-SRKLAQIKRET 358

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGF 420
              +  E  P+VE I     + ++     +  ++ D K  +D+   LL   + E   A  
Sbjct: 359 KSDIKKENIPNVEDIINAKEELLIASVEEI-MLENDYKLYLDLANKLLKGKNTEAAVASL 417

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR        PE  + +  V  + + +D++R F                 +++G K    
Sbjct: 418 LRHIYDDEFIPESYSKIKNV--QVQIKDNTRLF-----------------IALGEKDGLN 458

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
              L+ ++   + +  + I  ++V P+ +F+ V  D  +++
Sbjct: 459 VNKLLKLIHEKTKVPGRKIKDVKVMPNFSFITVPLDEAEII 499


>gi|332704265|ref|ZP_08424353.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554414|gb|EGJ51458.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 529

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/385 (35%), Positives = 214/385 (55%), Gaps = 10/385 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E +P ++ EALS  G+ +L  VQ   +   +   D++V ++TGSGKT AF L +     
Sbjct: 46  LEMLPPLLREALSRAGWTSLMPVQAKSMPIIMGGHDLMVQSRTGSGKTGAFVLPIL---- 101

Query: 64  AENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +R  P  +A  AL + PTRELA QV  E E L      VVAV  GGVS  ++    +
Sbjct: 102 ---ERIDPNLAATQALVLVPTRELARQVAHEAEVLVGDRARVVAVY-GGVSFGKQVEGFK 157

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181
            GAHIVVGTPGR+ DH+     N+  L+A++ DEAD ML +GF  D++ +    PK+R  
Sbjct: 158 AGAHIVVGTPGRILDHLLRHNFNLQELRALIFDEADRMLSIGFYPDMKQVQRYMPKRRVN 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT    +  LA  +      ++++S+    +++ +    V    R+  ++ I+  
Sbjct: 218 TFMFSATYPAFVMRLAGEFMHKPQMLSLSSKQVHVAEVQHVIYEVPRMGRERCLMRIIEV 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A +FC+T+A V   + VLA   +    L+G+LSQ +R + L  +R G  R+ ++T
Sbjct: 278 ENPTSAFIFCNTKAQVEYVSTVLANFGYDADGLTGDLSQSKRESILDRVRAGSLRLLVST 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  VI  E   +PE+ +HR+GRTGRAG  G  + ++    +   +RL +
Sbjct: 338 DVAARGIDIPDLSHVIMYEPPEDPESYIHRAGRTGRAGASGEVITLVDVIQKLEMQRLAK 397

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386
              + +V  P P+ E +R   ++R+
Sbjct: 398 RFTIDLVSRPLPTDETVRSVASERV 422


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/443 (34%), Positives = 238/443 (53%), Gaps = 18/443 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ R L+N  
Sbjct: 68  NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNKP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P +R+ L+F
Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +L  H  +
Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + +ATDVAA
Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V FV P+ M     R+  E  
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359

Query: 365 VS--VVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                   P  + EA+  ++R A   L+  L  ++  GD +     LL  HD   + A  
Sbjct: 360 KKRMTPLRPPTTDEALEGQQRLAVETLEG-LIANNNLGDYRTFAAELLENHDAVDVVAAA 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
           LR     L    + TPV++   R
Sbjct: 419 LR----SLTREPDDTPVTITEER 437


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 291/596 (48%), Gaps = 59/596 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+
Sbjct: 51  GLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                      AL +APTRELA+Q  + +E   A+T  +  V + GG     +   L+ G
Sbjct: 111 ERNVQ------ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRG 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L++SH++ +VLDEADEML +GF +D+E I  S+P  R   +
Sbjct: 165 AQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 224

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT+  AI  +A+ + KD V+V +++E+     I     +V    +  A+  +L     
Sbjct: 225 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 284

Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                   A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ +++G  
Sbjct: 285 HIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSL 344

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++         R
Sbjct: 345 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGR 404

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQ------GDEKKM 403
             R+ +     +     PS  A+ E  A R+L+      +   LD  +      GDE  +
Sbjct: 405 LRRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISV 464

Query: 404 VDVLLA-------KHDP----EKIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451
            D+  A          P    EK   G  +I R   L    E    +  +GRD+     R
Sbjct: 465 EDIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDK----DR 520

Query: 452 AFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
             K G        G R      + + + VG K + +   ++  +    GI+ + IG I +
Sbjct: 521 PLKGGANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEI 580

Query: 505 QPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
            P  + V+++AD   + L R       I   Y+ G +   R  +  G +S   +DG
Sbjct: 581 YPTFSLVDITADLSSEQLSR-------ISKGYVSGRQLRIRVDEGPGGRSHGDRDG 629


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 166/513 (32%), Positives = 261/513 (50%), Gaps = 21/513 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    A+ D   
Sbjct: 34  ALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGRADGD--- 90

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P++L + PTRELAVQV           G  V    GG  + R+ R L +G  +VV 
Sbjct: 91  ----PVSLVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVDVVVA 146

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P  R+ ++FSAT+ 
Sbjct: 147 TPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFSATMP 206

Query: 191 PAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             I  LA+ +  D VR+ I  E     +   +   A +VA + +  A+  +L       A
Sbjct: 207 ARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVESPTAA 266

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG
Sbjct: 267 IVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARG 326

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +
Sbjct: 327 LDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRI 386

Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423
             +  P+V  +R R     Q  L++ L  D +    + +V+ L  + D  ++A   +++ 
Sbjct: 387 AIDKIPTVADMRTRRLELTQGALRESLLEDDLD-PYRAIVESLTDEFDLVEVALAAVKLA 445

Query: 424 HRA---GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           H A   G    EEI  V +   R+   +     +  G +R    G++   + +G +    
Sbjct: 446 HEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRRAGVR 505

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + L+  +   + I+ + IG+I +    + VEV
Sbjct: 506 PQDLVGAITGETRISGRDIGSIEIADRFSLVEV 538


>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787 [Chlorella variabilis]
          Length = 689

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/408 (35%), Positives = 225/408 (55%), Gaps = 16/408 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ERG  +L  +Q+ +  P +R  D++  A+TGSGKT+AF + +   ++A         
Sbjct: 165 ALEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGPRNLR--- 221

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L +APTRELA QV RE+       G           +  + ++L+ G  IVVGTPG
Sbjct: 222 KPQCLVLAPTRELAKQVEREIAATAPGLGCGCYYGGN--PIGPQLKELRRGVDIVVGTPG 279

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I    L++S ++ VVLDEAD+ML++GF  D+E IL++ P++R+ ++FSAT+   +
Sbjct: 280 RIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENVPQERQTMLFSATLPRWV 339

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG-AKNAIVFC 251
             L K Y  +   +++  E     D D    L   +D R + +V++L  +G    AIVF 
Sbjct: 340 KKLVKQYLNNPENIDLVGEGNTGQDPDSITALAVPADARRSVLVDLLTVYGEGGKAIVFT 399

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         +  HL    AL G++SQ+ER   L   R  +  V +ATDVAARG+D+P
Sbjct: 400 QTKREADEVAASVGGHL-PCGALHGDMSQREREKVLASFRANKLMVLVATDVAARGLDIP 458

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS-VVWE 370
           D+++V+H EL  +PE+ LHRSGRTGRAG+ G ++ +         +R+ RE  V  V   
Sbjct: 459 DVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETEVQGVKLI 518

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPE 414
            APS   + E  A++++     LD +  + +K    +  +LL+  DP+
Sbjct: 519 TAPSPTQVIEAAAKQVMYR---LDGVDAEVRKYFTPVAKMLLSSRDPQ 563


>gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 457

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 457

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 156/517 (30%), Positives = 261/517 (50%), Gaps = 20/517 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P    I  +++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +   
Sbjct: 6   FEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPILEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRD 120
           +   N          A+ + PTRELA+QV +E+  L   K+G+      GG  + R+ + 
Sbjct: 66  VDPNNKHLQ------AIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +V+GTPGR+ DHI  K L +  +K VVLDEADEMLD+GFR+DIE IL+ +P +R
Sbjct: 120 LKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTPIER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +   FSAT+   I  L K YQ +   + +  +     +I    +    +++   +  ++ 
Sbjct: 180 QTTFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+         L    +   AL G+L Q +R   +   R G   + +A
Sbjct: 240 VYNPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+++V + +L  + E  +HR GRTGRAGR+G+S   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE--KI 416
           R     +V    P++  + E+      +       +S    +   V+ L  + +    ++
Sbjct: 360 RYTKCKLVKHSIPTIADVEEKKVAAFFKQVKDTVNESNLAKQINWVEALCEEQELSTLEV 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  +++        E I   S    R   R   +A K   GS    +G     ++VG K
Sbjct: 420 AAALVKLAMGEELKEEIIEEPS----RKEARKSKKAKK---GSTGAERGMVRLFINVGRK 472

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           Q+ +A+ ++  +   +GI+ + +G I +    TFVEV
Sbjct: 473 QRVQAKDIVGAIAGEAGISGKLVGTIDIYDKYTFVEV 509


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 216/367 (58%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV +T VQ A L   L+ +DV   A+TGSGKT AFG+ +      +N   +  S 
Sbjct: 19  LNQLGYVEMTPVQLAALPAILKGQDVRAKAKTGSGKTAAFGIGVL-----DNINVALVST 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA Q+ +EL  L  + +   ++ +C GG  +  +   L +  HIVVGTP
Sbjct: 74  Q-ALILCPTRELADQMSKELRRLARFTQNIKILTLC-GGQPLGPQLDSLVHAPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+FSAT    
Sbjct: 132 GRILEHLRKKTLVLEMLKVLVLDEADRMLDMGFADDIDEVISETPPQRQTLLFSATYPAD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q++ +++ + + + Q + I+ R      + R   +V+++R++   + +VFC+
Sbjct: 192 IERISARVQREPLKIEVDNGDEQ-TTIEQRFYETTANQRAALLVSVIRHYQPASCVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L  +   V+AL G+L Q+ER   L    +   RV +ATDVAARG+D+ +
Sbjct: 251 TKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLVATDVAARGLDITE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +P+  +HR GRTGRAGR G+++    PQ M  RA  +  +  + + W P
Sbjct: 311 LELVVNYELAFDPQVHVHRIGRTGRAGRHGLAISLCTPQEM-VRAHAIEDDMQMKITWVP 369

Query: 372 APSVEAI 378
              +  +
Sbjct: 370 VSELSVV 376


>gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 457

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 9/382 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL++ GY + +++Q   + P L   D++  AQTG+GKT AF L +    LA  
Sbjct: 15  LPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPV----LARL 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D  + A  P AL + PTRELA+QV    +    Y+K G  V    GG     + R LQ G
Sbjct: 71  D--TKAGGPQALVLTPTRELAIQVAEAFQKYARYSK-GFKVVPIYGGSDYRTQLRQLQRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ DH+R   L++S LK +VLDEADEML +GF DD+E+IL+ +P  R++ +
Sbjct: 128 VHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIAL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +AK + +    + I  +   ++ I  R  ++A   + +A+  IL     
Sbjct: 188 FSATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQKLDALTRILETEDY 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  TR +       LA   F   AL+G+++Q +R   +   + G+  + +ATDVA
Sbjct: 248 DGVIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++    +  +R    + R   
Sbjct: 308 ARGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIERTTG 367

Query: 365 VSVVWEPAPSVEAIRERDAQRI 386
             +     PS E + ++ A R 
Sbjct: 368 QKIDQMTLPSAEQVVDKRAARF 389


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 264/513 (51%), Gaps = 27/513 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY   T +Q   +   L  +DV+  AQTG+GKT AF L +   +  E     P   
Sbjct: 17  LRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMIEQVTDE-----PVVQ 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTRELAVQV   +        + V    GG  + R+ R L  G  +VVGTPGR
Sbjct: 72  --ALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQGVQVVVGTPGR 129

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+R   L   HL+ VVLDEADEMLD+GF +++E IL  +P +R+  +FSAT+ PA+ 
Sbjct: 130 VLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTALFSATLPPAVQ 189

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +L   Y +  VRV+IA+E      I      +   D+ +A+  +L     + AIVFC TR
Sbjct: 190 SLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILARDKLDALCRVLDAEMPQLAIVFCRTR 249

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L    +   +L G+LSQ  R   ++  R+G+  V +ATDVAARG+D+ ++ 
Sbjct: 250 QEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDVAARGLDIAEVS 309

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVWEP 371
            VI+ ++ ++PE+ +HR GRTGRAGR G+++ F+ P+   M +  ER+ R   +     P
Sbjct: 310 HVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIERVTR-TRIERCQMP 368

Query: 372 APSVEAIRERDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
             +  A R R A R      +Q P     +      ++D L  +HD   +AA  L++   
Sbjct: 369 TLADVAARRRLALRDQLREAMQAPGLTSYM-----DLLDELTVEHDLRTLAAAALKLLLN 423

Query: 427 GLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDNFK--GSSWFSLSVGSKQKAE 480
                +  T   L   R    +R    SRA +     R   +  G +   L++G   +  
Sbjct: 424 ETETEQVDTITRLEPPRSEQVERGERSSRARRAAVDERPTRRESGMARIRLNLGRNDQIR 483

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              ++  +   +G++ +SIGAI VQ  ++ V+V
Sbjct: 484 PADIVGAIANEAGLSGRSIGAIEVQARMSLVDV 516


>gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
          Length = 457

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 257/473 (54%), Gaps = 26/473 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+VI +A++E G+   T +Q   +   L+ KD++  AQTG+GKT AFG+ + + + 
Sbjct: 7   FDLEPKVI-QAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINKIS 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +++        AL +APTRELA+QV  E+E L    G+      GG  + R+ R L+ 
Sbjct: 66  KNDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I++GTPGRL DHI  K + +  +  VVLDEADEMLD+GF +DI+ IL   P +R+ +
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ P I  LA+ + KD   V++  +      ID   + V    +  A+  ++    
Sbjct: 180 LFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMES 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V +ATDV
Sbjct: 240 PELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR--AERLF 360
           AARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +  FV P+ +      ER+ 
Sbjct: 300 AARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVT 359

Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
           R     +  +P P++ EA+  +  QRI+ + L L+ ++  E    K +   +L ++D  +
Sbjct: 360 RH---RIPRKPLPTLAEALEGK--QRIIAERL-LEVVEKGELNEYKGLAIQMLEQYDSVQ 413

Query: 416 IAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           + +  L++       A  E+TP   +  + R  D     + GG    N+ G S
Sbjct: 414 LLSAALKLMTGEKREASIELTPEDPIRAKRRKPD----VRSGGRKPSNYSGRS 462


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 238/449 (53%), Gaps = 30/449 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ R L+N  
Sbjct: 68  NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNRP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P +R+ L+F
Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPSERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +L  H  +
Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + +ATDVAA
Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V FV P+ M     R+  E  
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359

Query: 365 VS--VVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAKHDPE 414
                   P  S EA+       + Q  L LD+++        GD + +   +L  HD  
Sbjct: 360 KKRMTPLRPPTSDEAL-------VGQQRLALDTLEGLIANNNLGDYRTLASEILENHDAI 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
            + A  LR     L    + TPV++   R
Sbjct: 413 DVVAAALR----SLTKEPDDTPVTISEER 437


>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 446

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/336 (39%), Positives = 190/336 (56%), Gaps = 5/336 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDR 68
           I +ALSE GY   T +Q   +   L+ KD+L  AQTG+GKT AF + +   L  +   DR
Sbjct: 12  ILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPILQLLSVKKSTDR 71

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P  +   L + PTRELA+Q+G  L+     TG+   V  GGV+  R+   LQNG  ++
Sbjct: 72  KRPIRS---LIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTALQNGIDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    +++ H++  VLDEAD MLD+GF  D+  +L + P KR+ L FSAT
Sbjct: 129 VATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKRQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LA N   +  +V +   +     I      V   +++N +V +L+    K  +
Sbjct: 189 MPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVLQDPKIKTCL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K+LAEH  +  A+ G  SQ  R NAL   +    R+ +ATD+AARGI
Sbjct: 249 VFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVATDIAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+ +LE VI+ E+ + PE  +HR GRTGRAG KG +
Sbjct: 309 DVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTA 344


>gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
          Length = 483

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 43  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 99

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 100 -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 154

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 155 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 214

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 215 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 274

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 275 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 334

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 335 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 390


>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 516

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 218/384 (56%), Gaps = 8/384 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L  ++    
Sbjct: 11  LSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLLESIDCST 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELAVQV  EL  L   K G+ ++   GG S+ R+ ++L+ G 
Sbjct: 71  REVA------AIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKELKAGP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++ K L + H++  VLDEADEML++GFR+DIE +L+  P+ R+ ++F
Sbjct: 125 QVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQTVLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK +QK  + V +  E   ++ ID     + +  ++  I  ++ Y+  +
Sbjct: 185 SATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQAKEAVIARLIEYYDLQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF + + +V   T+ L        A+ G+L+Q +R+  L   R G   V +ATDVAA
Sbjct: 245 RVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+  ++ V + +L  + E  +HR GRTGRAG+ G S  FV  +N + R   +   + 
Sbjct: 305 RGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLRDIEDFSK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ 388
           V +     P+V+ + +R   ++ +
Sbjct: 365 VRIDRHNVPTVQDLAKRQQAKLWE 388


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 278/545 (51%), Gaps = 27/545 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   P+ 
Sbjct: 64  ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 123

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL +APTRELA+QV  E    YAK      V    GG +   +   L+ GA +VVGT
Sbjct: 124 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 182

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P+ R++ +FSAT+  
Sbjct: 183 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQVALFSATMPG 242

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y  D   +++ ++    ++I  R + +    + +A+  IL        I F 
Sbjct: 243 QIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMGPQKLDAMTRILEVEEFDGVIAFV 302

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D+ 
Sbjct: 303 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 362

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  VI+ ++  + E+ +HR GRTGRAGR G ++ F+ P+   + R  E+  R++   + 
Sbjct: 363 RISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLLRAIEKATRQSVEQMH 422

Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
              A +V  +R  + A+RI +      ++  ++  M   L+A ++ E             
Sbjct: 423 LPTAETVNTLRLGKFAERITE------TLASEDVSMFRDLIASYEEEHKVPAAEIAAALA 476

Query: 428 LCAP-------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           + A        +E+        R+R +D    F   G SR   +G++ + ++VG +Q+  
Sbjct: 477 VMAQGGQPLLVKELAAAPDFQKRERSKD---GFGSRGPSRQLTEGNATYRIAVGRRQRVM 533

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536
              ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+  
Sbjct: 534 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 593

Query: 537 GGEKP 541
            G KP
Sbjct: 594 NGRKP 598


>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 399

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/355 (37%), Positives = 204/355 (57%), Gaps = 10/355 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L     L     R
Sbjct: 16  QEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERL----KR 71

Query: 69  F-----SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           F     SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+
Sbjct: 72  FATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDKQTADLR 131

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVV T GRL DH++ K +N S ++ VVLDEAD MLD+GF DDI  I+   PK+R+ 
Sbjct: 132 AGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRMLPKQRQT 191

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT +  I  LA+++     ++ +A++N  +++++   + V    +   +  ++   
Sbjct: 192 LLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAVDTFQKRRLLERLIVDL 251

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC T+ SV + T+ L        A+ G+ SQQ R   L   ++G  RV +ATD
Sbjct: 252 DMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLRVLVATD 311

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           VAARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 312 VAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQKMFE 366


>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 457

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 173/530 (32%), Positives = 267/530 (50%), Gaps = 35/530 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL++ GY   T +Q   +   +  +DVL  AQTG+GKT AF L + S     
Sbjct: 16  NLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILS----- 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
           N  FS A+ P  L +APTRELA+QV       YA+   G  V    GG     + R L+ 
Sbjct: 71  NIDFS-ATEPQVLVLAPTRELAIQVAEAFHK-YAEHLKGFHVLPIYGGQEYGSQLRMLKR 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGR+ DH+R   LN+  LK +VLDEADEML +GF DD+E+IL+ +P  R++ 
Sbjct: 129 GVHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVA 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +A+ Y  D   V I ++      I  R  +V  S + + +  IL    
Sbjct: 189 LFSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHKIDILTRILEVEP 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+       + L    +   AL+G++ QQ+R   +  ++ G   + IATDV
Sbjct: 249 FDGMIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIVIATDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360
           AARG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P  +NM    ER  
Sbjct: 309 AARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSSIERAT 368

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKI 416
           R+    +     PS E I ++   +  Q     D+I  ++     ++V+    +HD  ++
Sbjct: 369 RK---KIELMELPSTEIINDKRIAKFKQR--ITDTIAAEDLAFFTRLVEQYCHEHDVAEV 423

Query: 417 AAGFLRIHRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-- 466
            A            P   T        PV    G +R RDD+   K     RD+  G   
Sbjct: 424 EAAAALASMVQGDTPLLFTAKPAKAERPVRREMG-ERSRDDAPFRK--KARRDDMYGDER 480

Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
              + + VGS    +A  ++  +    G++ ++IG I +  D + VE+ +
Sbjct: 481 REVYRIEVGSGHGVQAGNILGAIINEIGLDPEAIGRISIGDDYSTVELPS 530


>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 205/349 (58%), Gaps = 2/349 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L AL       N   
Sbjct: 13  IVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPALERLKRYANTSA 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  IV
Sbjct: 73  SPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDKQTADLRVGCEIV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GRL DH++ K +N + ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSAT
Sbjct: 133 VATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGMLPRERQTLLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LA+++      V +A++N  +++++   + V   ++   +  ++     K  I
Sbjct: 193 FADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRLLERLIVDLDIKQVI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  RV +ATDVAARG+
Sbjct: 253 VFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLRVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ +N Q+  E
Sbjct: 313 DIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMFE 361


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 222/394 (56%), Gaps = 15/394 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+   Y  +T +Q+  L   L  KDV+   +TGSGKT AF L L S L  +  R    
Sbjct: 16  ETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLSNLSVKRFRVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 74  ----TLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N++ +  +VLDEAD ML++GF + I+ I+D +P+ R+ L+FSAT   
Sbjct: 130 PGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQTLLFSATFPK 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVF 250
            I +LA    +D   + + S   Q + I+ R   L A  +RD+A+  +L  H  ++++VF
Sbjct: 190 NIESLASKVMRDPQMIKVES-THQTTTIEQRFYKLNATEERDDALEALLLTHKPESSVVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V + T  L+   F VV + G++ Q+ER  AL M  +    + +ATDVAARG+D+
Sbjct: 249 CNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVATDVAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    ++++   
Sbjct: 309 DNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYMDIAI--- 365

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            +P+V  + E+  +R     +    I G +K+ V
Sbjct: 366 -SPAV--LPEKPVERPFYPKMQTIQILGGKKQKV 396


>gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 625

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 262/527 (49%), Gaps = 21/527 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+ +   VQE ++   L  K DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116
           L   + A+N       A  A+ ++PTREL VQ+  +L ++     G+ +    GG  +  
Sbjct: 61  LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  IVV TPGRL D I    + ++ +  VVLDEADEML++GF D I  I +  
Sbjct: 115 QIRTIKHGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ ++     +    P  E I ++   +++ D +  D  +      +D ++ +    D 
Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414

Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           E I        F R       APE   P++    R    D S   KV  G R +   S +
Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474

Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               +++G         +M  L +     RQ +G I +    +++EV
Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEV 520


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/520 (30%), Positives = 269/520 (51%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISAL-CD 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           N++        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 69  NEK---KKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  AI  I+   
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +  SS +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSS 495


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 263/520 (50%), Gaps = 29/520 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   + +QE  +   L   DV+  AQTG+GKT AF L   S +    D    + 
Sbjct: 75  ALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELADINGVSR 134

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L +APTRELA+QV      +        V    GG     +   L+ GA +VVGTP
Sbjct: 135 DTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGTP 194

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +FSAT+  +
Sbjct: 195 GRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPNS 254

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ Y  D   V + ++    S+I  R + V  S + +A+  +L        IVF  
Sbjct: 255 IRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENYDGIIVFVR 314

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    F   A++G++ QQ R   +  +RDGR  + +ATDVAARG+D+  
Sbjct: 315 TKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVER 374

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369
           + LV++ ++  + E+ +HR GRTGRAGR+G ++ FV P+   M R+ E+  R+       
Sbjct: 375 ISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQK-----V 429

Query: 370 EP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAAGFL 421
           EP   P+ EA+ E   QR  Q     ++I+ ++    +++++    +HD   E IAA   
Sbjct: 430 EPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAALA 487

Query: 422 RIHRAG----LCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            I + G    L   E+I   S   S  D  R   +A +       N +G   + L+VG  
Sbjct: 488 VIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRA-----HNDEGMVNYKLNVGRS 542

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +  A  ++  L    GI    IG+I ++   T V +  D
Sbjct: 543 SRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 582


>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 601

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 175/571 (30%), Positives = 281/571 (49%), Gaps = 48/571 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   I ++LS+ GYV  + +Q A +   L  +DVL  AQTGSGKT AF L L   L 
Sbjct: 10  FLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLN 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     AP  L +APTRELAVQV     ++     G+ V    GG     + R L+
Sbjct: 70  IN------LKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGRL DH++   LN+S+L A+VLDEADEML +GF +D+E I+   PK+ + 
Sbjct: 124 QGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+  AI  ++K + K+   + I S      DI  ++  +    + +A++  L   
Sbjct: 184 ALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIK-QSYWMVYGRKTDALIRFLEVE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ ++ GR  + IATD
Sbjct: 243 DFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R 
Sbjct: 303 VAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE-KKMVDVLLAKHDPE--KI 416
            N ++     P +E + +R  +R    +Q+   L+S   DE   ++D L +  D +   +
Sbjct: 363 INQTIPEVQLPKIEVLCKRRLERFAKKVQEQ--LESRDLDEYSALLDKLYSPDDLDIKTL 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRD 461
           A+  L++ + G           L+  +D  +  SR F                     R 
Sbjct: 421 ASALLKMAQGG---------RPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERR 471

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDL 520
             K    + +  G     E R ++  +     IN ++IG I++      VE+      DL
Sbjct: 472 ELKDIDLYRIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYAIVELPKGLSKDL 531

Query: 521 LRRTVK---LDKGIQLKYLGGEKPDFRGYKS 548
           L+R +K   L+K I +K L     D + Y++
Sbjct: 532 LQRLIKTKILNKKINIKLLR----DIKNYET 558


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 159/519 (30%), Positives = 258/519 (49%), Gaps = 30/519 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +A+ E GY N T +Q   +   +  KDVL  + TG+GKT AFG+     +    
Sbjct: 9   ISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPAIEKVC--- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P AL I PTREL  QV  EL ++   K GV +    GG  + R+ + L+ G 
Sbjct: 66  ---QGTRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQIQLLKRGC 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IVVGTPGR+ DH+  + L +     V+LDEADEML++GF++DIE IL   P+  + + +
Sbjct: 123 GIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMPEGNEHQTV 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  + K +Q D VRV I S  R    ++          + NA+  +L ++ 
Sbjct: 183 LFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANALRVLLSHYD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++FC+T+  V      L +H  + ++L G++ Q+ RS  ++  R G   + IATDV
Sbjct: 243 PDLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNYPILIATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFRE 362
           AARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ ++    QR   R + R 
Sbjct: 303 AARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRAGIRDIIRY 362

Query: 363 ANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +++    P+   + E  R+A          + I  +  ++ + L+A    E IA   
Sbjct: 363 TKTNIIRHALPTSAQMMEANRNAFVAKVKEACDEGITEESMEIANELIA----EGIALEN 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +      +    EI  +       R+   + AF            +     +VG     +
Sbjct: 419 IISALISMTYKNEIIDIEAEEDAKRY---ASAFD-----------AISLKFNVGRNHGVQ 464

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
              ++  +   +G+N ++IG I V+ D T V+V A  VD
Sbjct: 465 PGNIVAAIIEETGLNGKAIGRIDVRKDFTLVDVEASKVD 503


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 211/363 (58%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQEA L   L  KDV   A+TGSGKT AFGL L   + A+  +F+  S 
Sbjct: 18  LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAK--QFNTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  +     ++ +C GGV    +R  L + AHI+V TP
Sbjct: 75  ---LVLCPTRELADQVANELRRLARFLPNIKILTLC-GGVPFSIQRDSLIHAAHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + + ++ +K +VLDEAD MLD+GF DDI  I+     +R+ L+FSAT    
Sbjct: 131 GRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSTQRQTLLFSATWPDE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q+D V + I S +   + ++ +   ++   +   +  +L +H   + +VFC+
Sbjct: 191 IAKISRKIQQDPVTIEINSPDELPA-VEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L E    V+AL G++ Q+ER   L    +G  RV +ATDVAARG+D+  
Sbjct: 250 TKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LE+VI+ ELS +PE  +HR GRT RAG  G+++ F  P+ +  RA  L    N+ + W+ 
Sbjct: 310 LEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIP-RANALEEMLNIKLDWQS 368

Query: 372 APS 374
           APS
Sbjct: 369 APS 371


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 13/370 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY + + +Q A +   L  +DVL  AQTG+GKT +F L + + +  +       + 
Sbjct: 22  LQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILARIDIKQ------TT 75

Query: 75  PLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P AL +APTRELA+QV    + +     G  V    GG S   +   L+ G H+VVGTPG
Sbjct: 76  PQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLSALRRGVHVVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L++S +K +VLDEADEML +GF DD+E IL  +P+ R+  +FSAT+  AI
Sbjct: 136 RVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPESRQTALFSATMPSAI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A  Y +D   + +A++     +I  R  LV+   + +A+  IL        I+F  T
Sbjct: 196 KRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRILEAENFDGMIIFART 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L    F   A++G++ QQ+R   +Q ++DG+  + +ATDVAARG+D+  +
Sbjct: 256 KLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVAARGLDVERI 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVVWE 370
             VI+ ++  +PE+  HR GRTGRAGR G ++ F+ P  +N+ +  ER  R+  +SV+  
Sbjct: 316 SHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATRQP-ISVLE- 373

Query: 371 PAPSVEAIRE 380
             PSVEA+ +
Sbjct: 374 -LPSVEAVND 382


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 291/596 (48%), Gaps = 59/596 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+
Sbjct: 51  GLPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                      AL +APTRELA+Q  + +E   A+T  +  V + GG     +   L+ G
Sbjct: 111 ERNVQ------ALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRG 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L++SH++ +VLDEADEML +GF +D+E I  S+P  R   +
Sbjct: 165 AQVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 224

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT+  AI  +A+ + KD V+V +++E+     I     +V    +  A+  +L     
Sbjct: 225 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 284

Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                   A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ +++G  
Sbjct: 285 HIKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSL 344

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++         R
Sbjct: 345 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGR 404

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQ------GDEKKM 403
             R+ +     +     PS  A+ E  A R+L+      +   LD  +      GDE  +
Sbjct: 405 LRRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISV 464

Query: 404 VDVLLA-------KHDP----EKIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451
            D+  A          P    EK   G  +I R   L    E    +  +GRD+     R
Sbjct: 465 EDIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDK----DR 520

Query: 452 AFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
             K G        G R      + + + VG K + +   ++  +    GI+ + IG I +
Sbjct: 521 PLKGGANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEI 580

Query: 505 QPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
            P  + V+++AD   + L R       I   Y+ G +   R  +  G +S   +DG
Sbjct: 581 YPTFSLVDITADLSSEQLSR-------ISKGYVSGRQLCIRVDEGPGGRSHGDRDG 629


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 203/355 (57%), Gaps = 9/355 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+   G+  +T +QE  +   L  +DV+  A TG+GKT AFG+ +A  +  E   
Sbjct: 10  EAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPEK-- 67

Query: 69  FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P A+ +APTRELA Q+  EL E  Y    V VA   GG ++ ++ R L  G  I
Sbjct: 68  ----KYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQI 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL DH +   ++++H+  VVLDEADEML++GF  D+  I++    ++ + MFSA
Sbjct: 124 VVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K  
Sbjct: 184 TISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDGR  + +ATDVAARG
Sbjct: 244 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           ID+ D++ VI+ ++  + E+  HR GRTGRA ++G+S +F +P+  ++R + L R
Sbjct: 304 IDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357


>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
 gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
          Length = 526

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/523 (29%), Positives = 264/523 (50%), Gaps = 45/523 (8%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+++ +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L  
Sbjct: 6   FEDLGLCPEIM-KAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
            +  +N +        A+ + PTRELA+QV  E+  L      +  + I GG  + ++ R
Sbjct: 65  KIDPKNKKLQ------AIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIR 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  +++GTPGR+ DH+R K + + ++  VVLDEADEML++GFR+DIE IL+  P++
Sbjct: 119 SLKSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEE 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  + K +QK+A  + +  +     +I+     V   +++  +  +L
Sbjct: 179 RQTVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  K +++FC+T+  V      L    +    L G++ Q +R   +   R G+  + +
Sbjct: 239 DIYNPKLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      + + +
Sbjct: 299 ATDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKEI 358

Query: 360 FREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            R     +  +  PS++ +             RI+++       Q  + ++ D      D
Sbjct: 359 QRYCKTKIYAQKVPSLDDVANTKMDKLMETINRIIEEEDLTTYFQMIQAEVNDSDYTSMD 418

Query: 413 PEKIAAGFLRIHRAGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              IAA  L+     LC+   EE        G D F D         G+ +   G     
Sbjct: 419 ---IAAALLK-----LCSGTKEE-------DGEDMFEDT--------GAEE--PGMVRLF 453

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +++G K KA+   ++  L   SG+  + +G I +    TFVEV
Sbjct: 454 INIGKKHKAKPGDILGALAGESGLPGKVVGTIDMYDKYTFVEV 496


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++  + VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMFE 362


>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 625

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/342 (38%), Positives = 208/342 (60%), Gaps = 18/342 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+ + G+ N T +QE  + P L E   D +  AQTG+GKT AFGL L   +  ++++   
Sbjct: 17  AVKDLGFENPTPIQEQSI-PVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFKSNK--- 72

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P AL + PTREL +Q+  +++     T G  V    GG ++ ++ R+++NG  IVV 
Sbjct: 73  ---PQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIRNGVQIVVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  K ++ +++K VVLDEADEML++GF++DI  IL ++P  ++  +FSAT+ 
Sbjct: 130 TPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWLFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  +AKNY    V + + ++N  + +I++   +V   D+  A+  I+ ++    A+VF
Sbjct: 190 PEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFNPEIFAVVF 249

Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           C T+      T+ +AEHL    +   AL G+LSQQ+R   +Q  RD   ++ IATDVAAR
Sbjct: 250 CKTKLD----TQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ ++  VI+  L    E+  HRSGRTGRAG+ G+S+ ++
Sbjct: 306 GIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIV 347


>gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKSYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 9/355 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+   G+  +T +QE  +   L   DV+  A TG+GKT AFG+ +   +  EN  
Sbjct: 10  EAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN-- 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P A+ +APTRELA Q+  EL  L Y    V VA   GG ++ ++ + L  G  I
Sbjct: 68  ----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQI 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFSA
Sbjct: 124 VVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K  
Sbjct: 184 TISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAARG
Sbjct: 244 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           ID+ D++ VI+ ++ S  E+  HR GRTGRA ++G+S +F +P+  ++R + L R
Sbjct: 304 IDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 357


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 256/513 (49%), Gaps = 35/513 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+   G+   + +Q   +   +  KDV+  AQTG+GKT AFG+ L   +  +N 
Sbjct: 36  PEIL-KAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNK 94

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           +        A+ + PTRELA+QV  E+  L AK   G+ V    GG  + ++ R L++G 
Sbjct: 95  KLQ------AIVLCPTRELAIQVAEEIRNL-AKYMHGIKVLPIYGGQEIVKQIRSLKSGT 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+R K + + H+  +VLDEADEML++GFR+DIE IL+  P++ + ++F
Sbjct: 148 QLVIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLF 207

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + K +Q +A  V +  +     +I+     V   +++  +  +L  +  K
Sbjct: 208 SATMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDIYTPK 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC+T+  V      L    +    L G++ Q +R   +Q  R G+  + + TDVAA
Sbjct: 268 LSVVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + +L  + E  +HR GRTGRAGR G S   +      + + + R    
Sbjct: 328 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKT 387

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGF 420
            +  +  PS+  +     + +L++         D  K + ++  +     +    +AA F
Sbjct: 388 KIYAQKVPSLNDVANTKMENVLEEIE-QIIENEDLTKFLQIIEERVNESDYTAMDLAAAF 446

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L+                  SG+    +    F   G       G     +++G K KA+
Sbjct: 447 LK----------------YCSGQQETEEKDMEFGDTGAEE---AGMVRLFINIGKKNKAK 487

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              ++  +   SGI  + IG I +    TFVEV
Sbjct: 488 PGDIVGAIAGESGIPGKLIGTIDMFDKYTFVEV 520


>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 201/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R  G K  I
Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
 gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
          Length = 586

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 215/376 (57%), Gaps = 9/376 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           P+++  A+ + G+V+ + +QE  +   L  ++DV+  AQTG+GKT AFGL + + L    
Sbjct: 10  PEILS-AVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPILNQLDLSQ 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     A+ + PTREL +Q+ +E+E   A   GV +    GG  + ++ + L++  
Sbjct: 69  KNVQ------AIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQIKGLRDNP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR  D I+   L I+++   VLDEADEML++GFRD+I+ IL+++P++++ L+F
Sbjct: 123 QIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPEEKQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A  Y    V + ++  N    +I+++  +V  SDR  A+  I  Y+ + 
Sbjct: 183 SATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRASDRYLALKRIADYYPSI 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC TR         L +  +   AL G+LSQ +R   +   R    ++ +ATDVAA
Sbjct: 243 YGIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQILVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+  L  +PE  +HRSGRTGRAG KG+S+ +      R+ + + +  + 
Sbjct: 303 RGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVKDVEKFISA 362

Query: 366 SVVWEPAPSVEAIRER 381
            +  +  PS E I ER
Sbjct: 363 PIELKKVPSGEEICER 378


>gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
 gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
          Length = 644

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 224/413 (54%), Gaps = 17/413 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           MK FE +   P+ I  A+ E GY     VQE ++   L E  DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSPE-IRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   +   N        P +L + PTREL +Q+  +L   Y+K   G+ V    GG S+
Sbjct: 60  PLIQQINVNN------RIPQSLILCPTRELCLQIAGDLN-DYSKYIDGLRVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL 
Sbjct: 113 ESQIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R  L+FSAT+SP I  ++K Y  +A  + I   N   S++ +    V   D+  A
Sbjct: 173 DVPQERNTLLFSATMSPEIARISKKYLHNAKEITIGRRNEGTSNVKHVVFTVHAKDKYAA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + 
Sbjct: 293 LQLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +
Sbjct: 353 KMREIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEIRDFM 402


>gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
 gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
 gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/363 (39%), Positives = 211/363 (58%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQEA L   L  KDV   A+TGSGKT AFGL L   + A+  +F+  S 
Sbjct: 18  LNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLGLLQRIDAK--QFNTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  +     ++ +C GGV    +R  L + AHI+V TP
Sbjct: 75  ---LVLCPTRELADQVANELRRLARFLPNIKILTLC-GGVPFSIQRDSLIHAAHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + + ++ +K +VLDEAD MLD+GF DDI  I+     +R+ L+FSAT    
Sbjct: 131 GRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQMSAQRQTLLFSATWPDE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q+D V + I S +   + ++ +   ++   +   +  +L +H   + +VFC+
Sbjct: 191 IAKISRKIQQDPVTIEINSPDELPA-VEQQFYEISRYGKLGLLQKLLSHHQPNSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L E    V+AL G++ Q+ER   L    +G  RV +ATDVAARG+D+  
Sbjct: 250 TKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LE+VI+ ELS +PE  +HR GRT RAG  G+++ F  P+ +  RA  L    N+ + W+ 
Sbjct: 310 LEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIP-RANALEEMLNIKLDWQS 368

Query: 372 APS 374
           APS
Sbjct: 369 APS 371


>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 457

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 24/462 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422
               PSV+A+ +    R +      +++ G + +M   LL +++ E       IAA   +
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + +    AP  +TP  +   R+ F    R  +   G R  F+
Sbjct: 431 LLQGN--APFLLTP-PVRGAREDFAPRERNDRADRGERPRFE 469


>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
 gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
          Length = 459

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 208/375 (55%), Gaps = 7/375 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + S L  +  R    
Sbjct: 17  ETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 75  ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N+  L  +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT   
Sbjct: 131 PGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+   +    + + S +   S + +   +     RD A+ N+L  H  ++A+VFC
Sbjct: 191 KIEQIAQRIMRSPEMIKVESTHDTSSIVQHFYKVEGTEARDEALANLLLTHQPESAVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L    F V+ L G+L Q+ER  AL    +    + +ATDVAARG+D+ 
Sbjct: 251 NTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSILVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+    ++ VV   
Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370

Query: 372 APSVEAIRERDAQRI 386
            P+   ++   A+ +
Sbjct: 371 LPAKSNLQPYQAKMV 385


>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
 gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
          Length = 483

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 198/343 (57%), Gaps = 2/343 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72
           A+++ GY  +T +Q   +   L  +DV+ +AQTG+GKT AF + L   +L  EN   SPA
Sbjct: 31  AVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQKMLRHENTSMSPA 90

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL +APTRELA QV   ++     T +  AV  GGV +  +  +L+ G  +++ T
Sbjct: 91  RHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTAELKAGVEVLIAT 150

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  +   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R+ L+FSAT SP
Sbjct: 151 PGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKTRQTLLFSATFSP 210

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +Y +D V V +A  N   S ++ R   V   D+   +  ILR      AIVF 
Sbjct: 211 EIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGVGDDDKRATVRQILRQRELSQAIVFV 270

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +++   +R  +       +  AL G+ SQ ER  AL   + G   + +ATDVAARG+D+ 
Sbjct: 271 NSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIA 330

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           DL  V + ++  N E+ +HR GRTGRAG  G++V ++ ++  R
Sbjct: 331 DLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTR 373


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/520 (32%), Positives = 263/520 (50%), Gaps = 34/520 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS  GY   T +Q   + P    +D+L  A TG+GKT AF L +   L     R     
Sbjct: 24  ALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVLERLAQVEKR---GD 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP AL + PTRELAVQV   +     + G  V    GG  + R+ R L+ G  +VV TPG
Sbjct: 81  APFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLRVLERGVDVVVATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DH+    LN+  L+ VVLDEADEMLD+GF +D++ IL  +PK+R+ ++FSAT+ P I
Sbjct: 141 RAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQRQTVLFSATMPPRI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             LA+ +  +  R+ I  E  +  +   +   A +V  + +  A+  +L       AIVF
Sbjct: 201 DKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALGRVLDVEAPTAAIVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR  V + T+ L    ++  +L G +SQ++R   +  +R+G A + +ATDVAARG+D+
Sbjct: 261 CRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTADLLVATDVAARGLDV 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
             L  V++  + S PE+ +HR GR GRAGR+G+++ +       M +  ER+ ++    +
Sbjct: 321 EQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGMLKTIERVTKQ---RI 377

Query: 368 VWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI- 423
             E  P+V  +R R     +  L + L  D ++G  + +V+ L  + D  ++A   +++ 
Sbjct: 378 TMEKVPTVADLRARRLELTRAALHESLLEDELEGF-RVVVESLSDEFDVMEVALAAVKLA 436

Query: 424 HRA-GLCAPEEITPVSL---------VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           H A G  A EE  P            V+G D  R + R        R    G +   +  
Sbjct: 437 HEASGAAADEEEIPEVAHRSDRSRGGVAGSDGQRRERRV-------RPPTAGMTRLFVGA 489

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G       + ++  +   + +  + IGAI +    + VEV
Sbjct: 490 GRSSGIRPQDIVGAIAGEARLQGRDIGAIEITDRFSLVEV 529


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 153/474 (32%), Positives = 242/474 (51%), Gaps = 33/474 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E++   G+   T +QE  +   L   D++  A TG+GKT AFG+ +      + D   
Sbjct: 13  VSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVERFSRQQDTIQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L I PTRELAVQV  E+  +    G+      GG  ++R+ R L+   HI+VG
Sbjct: 73  ------GLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKKPHIIVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K + ++ L  VVLDEADEML++GF +DIE IL   P++R+ L+FSATIS
Sbjct: 127 TPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLLFSATIS 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ + K+   + I ++      ID   V V    +   +   L       AIVF
Sbjct: 187 KPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLDIQSPDLAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    + L++  +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367
             +  V + ++  +PE+ +HR GRTGRAG+KG ++ FV P+ M   R  ER+ +     +
Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIERITKH---KI 363

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEKIAAGFLRIH 424
              P P+++ + E   QR+  + L     +G     +++ + LL + D   + A  LR+ 
Sbjct: 364 SRRPIPTIKEVIE-GQQRLAVEKLLKVVEEGGFEHYRRLAEDLLIEQDAATLVAAALRM- 421

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAF-------------KVGGGSRDNFKG 465
              +    + TPV L   R      + +F             K+ G  R  FKG
Sbjct: 422 ---ITKEPDRTPVQLTEERPLRSKKAESFQPRMRKPYKDNRGKIEGKKRGEFKG 472


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 204/366 (55%), Gaps = 30/366 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL ERG+  LT VQ A L   L  +DV+  A+TG+GKT+AF L +A       +R  
Sbjct: 12  VQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA-------ERLE 64

Query: 71  PASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           PA A    P AL +APTRELA+QV  EL+W  A   + V    GG    ++ + L+ G  
Sbjct: 65  PARAKGRAPRALVLAPTRELALQVAGELDW--AAPHLEVLTVYGGTGYGQQAQALRRGCD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  D++R   L+++ ++ VVLDEADEML +GF +D+E +L ++   R+ L+FS
Sbjct: 123 VVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSARQTLVFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGA 244
           AT+      LA+ + KD    N+  +      + YR  A+    + R   + ++L  +GA
Sbjct: 183 ATMPSWARRLAERHLKDPFVANLVKDE----AVTYRELAIEAPTATRIAVLSDVLHAYGA 238

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+A        LA       A+ G+LSQ  R   +   R G  RV +ATDVA
Sbjct: 239 GRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLVATDVA 298

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQ 353
           ARG+D+P++ELV+H  L    E   HRSGRTGRAGR G  V +           + + ++
Sbjct: 299 ARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADLERALR 358

Query: 354 RRAERL 359
           RR ERL
Sbjct: 359 RRFERL 364


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 263/524 (50%), Gaps = 37/524 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E GY N T +Q   +   L  +DVL  AQTG+GKT AF L + S     N R + A
Sbjct: 22  QALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLS-----NIRLALA 76

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    + +     G  V    GG     + R L+ G H+VVGT
Sbjct: 77  E-PQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT+  
Sbjct: 136 PGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQVALFSATMPS 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y  +  +V I ++      I  R  +V  S + + +  IL        ++F 
Sbjct: 196 AIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGGSHKLDILTRILEVEPFDGILIFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   AL+G+++Q +R   +  +++G   + IATDVAARG+D+ 
Sbjct: 256 RTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVIATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + +  +  +    
Sbjct: 316 RISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAIEKATHSRIELME 375

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGFLRIHRA 426
            PS E I  +   +  Q     D+I  ++     ++++    +HD P   AA  L    A
Sbjct: 376 LPSTEIINNKRIAKFNQK--ITDTIAAEDLDFFTRIIEQYCHEHDVPVIEAAAAL----A 429

Query: 427 GLCAPEEITPVSLVSGRDRFR--DDSRAFKVGGGS---------------RDNFKGSSWF 469
            L   E  TP+ L +  ++ R  DD        GS               R + +G   +
Sbjct: 430 SLVQGE--TPLLLSNKPEKTRSHDDREGSGRDRGSDRDRGFDRDRGPSKRRSSDEGKERY 487

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            L VGS+   +A  ++  +    G++  S+G I +    + VE+
Sbjct: 488 RLEVGSEHGVKAGNILGAILNEVGLDPDSVGQISINDSYSTVEL 531


>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
 gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
          Length = 457

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
 gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
          Length = 625

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 165/527 (31%), Positives = 262/527 (49%), Gaps = 21/527 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+ +   VQE ++   L  K DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116
           L   + A+N       A  A+ ++PTREL VQ+  +L ++     G+ +    GG  +  
Sbjct: 61  LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  I+V TPGRL D I    + ++ +  VVLDEADEML++GF D I  I +  
Sbjct: 115 QIRTIKHGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ ++     +    P  E I ++   +++ D +  D  +      +D ++ +    D 
Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414

Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           E I        F R       APE   P++    R    D S   KV  G R +   S +
Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474

Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               +++G         +M  L +     RQ +G I +    +++EV
Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEV 520


>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 603

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 266/527 (50%), Gaps = 44/527 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+SE G+   + +QE  +   L   D  V  AQTG+GKT AFGL L   L      FS  
Sbjct: 16  AISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQL-----DFS-Q 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P AL + PTREL +Q+ ++LE  +AK   GV V    GG ++  + R ++ G  IVV 
Sbjct: 70  KHPQALVLCPTRELCLQIAKDLEK-FAKYIDGVHVVAVYGGANISDQLRQIRRGVQIVVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I    ++ S++K VVLDEADEML++GF++DI  IL  +P++++  +FSAT+ 
Sbjct: 129 TPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A+NY  D V + + ++N  +++I++   L+   D+  A   I+  +     IVF
Sbjct: 189 REVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFGIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+       + L +  +   +L G+LSQQ+R   ++  RD   ++ IATDVAARGID+
Sbjct: 249 CRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF---------------VIPQNMQRR 355
            D+  VI+  L    EN  HRSGRT RAG+ G+S+                +I +  +R+
Sbjct: 309 NDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPFERK 368

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                 E     ++     +E +   D Q     P  +++++          L+K D   
Sbjct: 369 QVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPAIMENLEA---------LSKED--- 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR---FRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           I   F  +         +  P   +  RD     R D R  +  GGS    KG +   ++
Sbjct: 417 IIKRFASLEFNRFLDYYKNAPDLNIEARDNERGERGDRREDRSRGGS----KGYTRLFMN 472

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +GS  +     ++  +C ++ I+ +SIG I ++   TF EV  + V+
Sbjct: 473 LGSVDEFTRGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVE 519


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 166/520 (31%), Positives = 263/520 (50%), Gaps = 29/520 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   + +QE  +   L   DV+  AQTG+GKT AF L   S +    D    + 
Sbjct: 80  ALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELADVNGISR 139

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L +APTRELA+QV      +        V    GG     +   L+ GA +VVGTP
Sbjct: 140 DTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQVVVGTP 199

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +FSAT+  +
Sbjct: 200 GRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALFSATMPNS 259

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ Y  D   + + ++    ++I  R + V  S + +A+  +L        IVF  
Sbjct: 260 IRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENYDGIIVFVR 319

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    F   A++G++ QQ R   +  +RDGR  + +ATDVAARG+D+  
Sbjct: 320 TKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAARGLDVER 379

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369
           + LV++ ++  + E+ +HR GRTGRAGR+G ++ FV P+   M R+ E+  R+       
Sbjct: 380 ISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQK-----V 434

Query: 370 EP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAAGFL 421
           EP   P+ EA+ E   QR  Q     ++I+ ++    +++++    +HD   E IAA   
Sbjct: 435 EPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAALA 492

Query: 422 RIHRAG----LCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            I + G    L   E+I   S   S  D  R   +A +       N +G   + L+VG  
Sbjct: 493 VIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRA-----HNDEGMVNYKLNVGRS 547

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +  A  ++  L    GI    IG+I ++   T V +  D
Sbjct: 548 SRVTAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 587


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 9/355 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+   G+  +T +QE  +   L   DV+  A TG+GKT AFG+ +   +  EN  
Sbjct: 50  EAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN-- 107

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P A+ +APTRELA Q+  EL  L Y    V VA   GG ++ ++ + L  G  I
Sbjct: 108 ----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQI 163

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFSA
Sbjct: 164 VVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFSA 223

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K  
Sbjct: 224 TISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKRV 283

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAARG
Sbjct: 284 MVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAARG 343

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           ID+ D++ VI+ ++ S  E+  HR GRTGRA ++G+S +F +P+  ++R + L R
Sbjct: 344 IDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEE-KKRVQELLR 397


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 160/515 (31%), Positives = 265/515 (51%), Gaps = 27/515 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL E G+   + +Q+  +   L  +D++  AQTG+GKT AFG+ +   +  E
Sbjct: 25  NLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPIIQKI-NE 83

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR   A     L ++PTREL +QV  E+  +     + V    GG  + R+ R L+ G 
Sbjct: 84  KDRHIQA-----LVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQIRSLKRGI 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGRL DHIR   +++ ++  +VLDEADEMLD+GF DD+E I+ + P +R+ ++F
Sbjct: 139 QVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPPERQTMLF 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +++K Y +    V I  E      ID         D+ + +  IL      
Sbjct: 199 SATMPRPILSISKKYMRAPKVVAIHKEVVTAPTID--QYYYETRDKVDGLCRILDTTDDC 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V      LA   ++   L G+LSQ +R   ++  R G+  + +ATDVAA
Sbjct: 257 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDILVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+ ++  V++ ++ S+ E+ +HR GRTGRAG  G+++ F+ P+   R+ + + R   
Sbjct: 317 RGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREF-RQLKLIERSIK 375

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             ++    P+  ++ ER  ++I   +Q  L  D  Q D   +V+ L   +D + IAA  L
Sbjct: 376 TKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQ-DYLPIVETLEKDYDVQDIAAAAL 434

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +  + G  A EE  P    S  D             G++    G     +++G   +   
Sbjct: 435 KFMQEGAKALEE--PAEEESLPDAL--------ANTGAK---PGMVRLFVNIGRSSRVTV 481

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           R ++  +   + I  +SIG I +    +FVEV  +
Sbjct: 482 RDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPME 516


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 248/462 (53%), Gaps = 24/462 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422
               PSV+A+ +    R +      +++ G + +M   LL +++ E       IAA   +
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + +    AP  +TP  +   R+ F    R  +   G R  F+
Sbjct: 431 LLQGD--APFLLTP-PVRGAREDFAPRERNDRADRGERPRFE 469


>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
 gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
          Length = 457

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 205/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV + T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 IPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 309 AARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 212/377 (56%), Gaps = 9/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI + I +A+ + GY N + +QE  +   L  +DV+  AQTG+GKT AF + L 
Sbjct: 15  MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             + A ND         +L + PTREL +QV RE+E L   K  + V    GG  + ++ 
Sbjct: 75  ENVEA-ND------ITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQI 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA IVVGTPGR+ D ++ + L +  LK VVLDEADEM D+GFRDD++ ILD++  
Sbjct: 128 KALEKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNP 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+   FSAT+       +K YQ +  ++ I ++      ID   + +  + ++  +  +
Sbjct: 188 QRQTCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKLKEAMKEETLTRL 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  K AIVFC+T+  V +  + L +  + V  L G+L Q  R   ++  R+   ++ 
Sbjct: 248 LEINNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D++LVI+ +L    E  +HR GRT RAG+ G+S  +I    + R   
Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367

Query: 359 LFREANVSVVWEPAPSV 375
           + +     +   P PS+
Sbjct: 368 IEKYTKADIKEIPIPSL 384


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 239/433 (55%), Gaps = 22/433 (5%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK F +    P+V+ +A++E G+   T +Q   +   L  +D++  AQTG+GKT AFGL 
Sbjct: 1   MKNFADFGLEPRVL-QAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  E +R       ++L + PTRELA+QV  E+  L    G+      GG  + R+
Sbjct: 60  LIHKIAKEEERI------VSLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P
Sbjct: 114 IRALKKKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ L+FSAT+   I  LA  + KD   V++  ++     ID   + V    +  A+  
Sbjct: 174 EERQTLLFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V
Sbjct: 234 LLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +  FV P+ M    
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLY 353

Query: 357 --ERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAK 410
             ER+ R     +  +P P++ EAI  +  QRI+ + +     QG   + K +   LL +
Sbjct: 354 FIERVTRH---RIPRKPLPTIAEAIEGK--QRIIAERVLEIIEQGELTEYKGLAIQLLEQ 408

Query: 411 HDPEKIAAGFLRI 423
           +D  ++ A  ++I
Sbjct: 409 YDSVQLLAAAMKI 421


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AICRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +S+ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITESLAGGQIDMYRDLLQRYETE 416


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 171/551 (31%), Positives = 285/551 (51%), Gaps = 43/551 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ + LSE GY   + +Q   + P L   DV+  AQTG+GKT AF L + S L  +  
Sbjct: 11  PRVL-QVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPILSRLDLD-- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
               A  P AL +APTRELA+QV    +   A   G  V    GG S   +   L+ GAH
Sbjct: 68  ----AKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKRGAH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L+++ LK +VLDEADEML +GF +D+E IL S P++R++ +FS
Sbjct: 124 VVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVALFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  ++++Y  + V +++ ++    ++I  R + V    + +A+  IL       
Sbjct: 184 ATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTRILEVETFDA 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    F   A++G++ Q  R   +  +R+GR  + +ATDVAAR
Sbjct: 244 MIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREA 363
           G+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  ++M R  E+  R+ 
Sbjct: 304 GLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEKATRQ- 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             S+     PS+EA+ ++   +  Q     D++   + ++   L+ +++         R 
Sbjct: 363 --SIGQMELPSIEAVNDQRLAKFAQG--ITDTLAKGDLELFKGLVEEYE---------RT 409

Query: 424 HRAGLCAPEEITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGSS----WFSLS 472
           H             S+V G       R+   + +R  + GG ++  F+ +S     + + 
Sbjct: 410 HDVPAAE-IAAALASMVQGDQPLLMEREPEPEPNRRGRDGGAAK--FQPTSSDTETYRVE 466

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLD 528
           VG + +     L+  L    G+  + IG I ++   T +E+ AD  D     LR+T    
Sbjct: 467 VGRRNRVTPSALVGALANEGGLPSKHIGHIDIRDGHTLIELPADLPDDMLRKLRKTQVAG 526

Query: 529 KGIQLKYLGGE 539
           +G+++    GE
Sbjct: 527 RGLRISLADGE 537


>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
          Length = 489

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 457

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 170/521 (32%), Positives = 265/521 (50%), Gaps = 24/521 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L + +     R +  
Sbjct: 57  EALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLNHVEPGACRPNTT 116

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           SA   L + PTRELA+QV   +     K G+ V    GG  + ++ R L+ G  +VV TP
Sbjct: 117 SA---LVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKRGVDVVVATP 173

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR  DH+R   L +  ++ VVLDEADEMLD+GF +D+E IL  +P+ R+  +FSAT+ P 
Sbjct: 174 GRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTALFSATLPPR 233

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I ++A+ +  + VRV IA E  +  +I      A +V  + +   +  +L       AI+
Sbjct: 234 IASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGRLLDVESPTAAII 293

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC TR  V   T  L    ++  AL G ++Q++R   ++ ++     + +ATDVAARG+D
Sbjct: 294 FCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVATDVAARGLD 353

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++     R    + R     +  
Sbjct: 354 IPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIERVTGQRIEV 413

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE---KKMVDVLLAKHDPEKIAAGFLR-IHR 425
              P+V  +RE+  Q +L+  L    + G+    + +V+ L ++ D   IAA  ++ +H 
Sbjct: 414 ATVPTVADMREKR-QEMLRASLRETLVTGEYDSLRNVVESLASEFDAMDIAAAAVKLLHE 472

Query: 426 A---GLCAPEEITPVSLVSGRDRFRDDSRAFKVG------GGSRDNFKGSSW--FSLSVG 474
           A   G    E   PV       R R        G       G +      +W    L +G
Sbjct: 473 AQDEGRDTEETEIPVVAPPQERRERTGKFGAPTGRPGRPERGPKARGGPPTWDVTRLWIG 532

Query: 475 SKQKAEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + + A  R   L+  +   +G+    IGAI++    + VEV
Sbjct: 533 AGRHAGVRPADLVGAIAGEAGVESSKIGAIQIGDAFSLVEV 573


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 280/564 (49%), Gaps = 49/564 (8%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L + GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S L L++        
Sbjct: 32  LKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILSRLDLSQK------- 84

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +P AL +APTRELA+QV    E +     GV +    GG     +   L+ G HIVVGTP
Sbjct: 85  SPQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLSALRRGVHIVVGTP 144

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P  +++ +FSAT+   
Sbjct: 145 GRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDDKQVALFSATMPAQ 204

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++K Y  D   V + +     ++   R ++V+ S + +A+  IL     +  IVF  
Sbjct: 205 IRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQKVDALTRILEVENFEAMIVFVR 264

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L    +   A+SG+++Q +R   +  ++ G+  + +ATDVAARG+D+  
Sbjct: 265 TKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILVATDVAARGLDVDR 324

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + +     +   P 
Sbjct: 325 ISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLLTAIEKATRQPLTPMPL 384

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGFLRIHRAG 427
           PSV+ +      R   D +     Q D     + ++   +A HD PE   A  L +   G
Sbjct: 385 PSVDDVNVTRLAR-FDDAITSALAQQDRISRFRDIIAHYVAHHDVPEADVAAALAVVAQG 443

Query: 428 -----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------------FKGSSWF 469
                L A + +T         R   D+R  ++    RD+             ++  + +
Sbjct: 444 EEPLLLSADDALT--------QRIERDARDDRLARAGRDDRGRGERPVRRDRGYRPMAPY 495

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD--GVDLLRRTVKL 527
            + VG +Q+ E R ++  L    G++R   G IR+ PD + VE+ AD  G  L R T   
Sbjct: 496 RIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIRIMPDFSIVELPADLPGDTLARLTGTR 555

Query: 528 DKG--IQLKYLGG----EKPDFRG 545
             G  I+L+   G     KPD RG
Sbjct: 556 ISGKLIELRPDRGAGARRKPDERG 579


>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++  A++  GY   +++Q+  +   +   D++  AQTG+GKT AF L +     
Sbjct: 11  FNLNPNILA-AVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  PA   P AL +APTRELA+QV    E  Y+K   GV V    GG  +  + + 
Sbjct: 67  ----RIDPAKREPQALILAPTRELALQVATAFET-YSKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P  R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464
            +AA  LR    G    L A E+  P+   +     R +    +   G R+        +
Sbjct: 419 ALAAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|108763335|ref|YP_634008.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622]
 gi|5668905|gb|AAD46062.1| DEAD-box protein [Myxococcus xanthus]
 gi|108467215|gb|ABF92400.1| ATP-dependent helicase, DEAD/DEAH-box family [Myxococcus xanthus DK
           1622]
          Length = 808

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 133/343 (38%), Positives = 194/343 (56%), Gaps = 11/343 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL+ERGY N T VQ     P +  KD++V ++TG+GKT AFGL L   + A+
Sbjct: 35  NLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEKIPAD 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R        AL + PTRELA+QV  EL+ L    G+ +A   GG S+ ++   L+ G 
Sbjct: 95  ERRVR------ALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALEEGT 148

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI    L +      VLDEADEML+ GF +++  ILD  PK R++L+F
Sbjct: 149 PIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLF 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYH 242
           SAT+   I  L   Y  +A  + ++ +      I +  +   +SD   +   ++ +L   
Sbjct: 209 SATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHH--IRYDVSDAFPKPRNLIYVLEKE 266

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +NAI+FC+TR   +  T VL  + F    L+G+L Q+ER   +  ++ G     +ATD
Sbjct: 267 EPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATD 326

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  LE VI+  L  +P   LHR GRTGR G KG ++
Sbjct: 327 IAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAI 369


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 193/336 (57%), Gaps = 9/336 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++ E G+   + +QE  +   L+  D++  AQTG+GKT+AF + L   +      F 
Sbjct: 15  IKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLLQKI------FI 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P ++P A+ + PTREL +QV  E+  +  + K   ++ V  GG  + R+ R L  G H+V
Sbjct: 69  PDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVY-GGQPIGRQIRVLNKGVHVV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DHI  K L++  +  VVLDEADEMLD+GFR+DIE IL  +PK+R+ L+FSAT
Sbjct: 128 IGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQTLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  + K YQK    + +A       +I          D+   +  ++  +     +
Sbjct: 188 MPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLTRLIDVYDVNLGL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+  V    K L    +    + G+++Q+ R   +   R+G   + IATDVAARGI
Sbjct: 248 VFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+P++E+V++ ++  NPE  +HR GRTGRAG  G +
Sbjct: 308 DVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYA 343


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 277/527 (52%), Gaps = 41/527 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+  +G+   T++Q+  + P L  K  D++  +QTG+GKT A+GL +  +L        P
Sbjct: 19  AVRAKGFETPTAIQKLTI-PHLLTKTNDIIAQSQTGTGKTAAYGLPILQSL-------EP 70

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ A+ + PTRELA+Q   EL     +  + +    GG ++  + R L  G  IVVG
Sbjct: 71  ARGPVQAIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLAKGVDIVVG 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR   L + +++ +VLDEADEML++GF +D+E I+  + ++RR+L+FSAT+ 
Sbjct: 131 TPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRVLLFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAI 248
             I  L+K Y +D   V +  EN+Q  +D+  +    V  +D+ +A+  I+        I
Sbjct: 191 ERIIRLSKTYMRDTEIVRV--ENKQLTTDLTEQIYFEVREADKFDALTRIIDVEPEFYGI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+         LA   +    L G++SQ +R   L+  RD    + +ATDVAARGI
Sbjct: 249 IFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILVATDVAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L  VI+  L  + E+ +HR GRTGRAG++G ++  +  +  R    L R+  V + 
Sbjct: 309 DVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNLMRDIKVEIK 368

Query: 369 WEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-H 424
            E  PS + I E    +I   +Q+ +  +S  G  ++  + LLA++ P+      LR+  
Sbjct: 369 RETLPSPQDIVEMKRLKIKDEMQEIVENESYDG-YREFAEELLAEYTPDVALGALLRLAF 427

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           R+ L                   D S   ++   S D  KG++   L+VG +    AR L
Sbjct: 428 RSEL-------------------DQSNYPEIRSFSVDR-KGTARLFLAVGRRDGYTARKL 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLRRTVKLDKG 530
           + ML    G+  + I  +++  + +FV V   D  +++R+  +L++G
Sbjct: 468 VDMLKFKCGLRDKYINDVQISDNFSFVSVPFHDAEEIVRKLNRLNRG 514


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 205/375 (54%), Gaps = 13/375 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           +AL+  GY   T +Q   + P L  +D+L  A TG+GKT AF L +         R  P 
Sbjct: 28  DALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPILQ-------RMEPG 80

Query: 72  --ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A  PLAL + PTRELAVQV   L       G  V    GG  + R+   L+ G  +VV
Sbjct: 81  RSAIGPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLNALKRGVDVVV 140

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSAT 188
           GTPGR+ DHI    L +  L+ VVLDEADEMLD+GF +DIE IL  +P   R+ ++FSAT
Sbjct: 141 GTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDGGRQTVLFSAT 200

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKN 246
           + P I  +A+ +  D VR+ IA E        +   A +VA + +  A+  +L       
Sbjct: 201 MPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALGRVLDVESPTA 260

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC TR  V + T+ L    ++  AL G ++Q++R   +  +R+G A + +ATDVAAR
Sbjct: 261 AIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTADLLVATDVAAR 320

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ ++ S+PE+ +HR GR GRAGR+G ++ +      R  + + R     
Sbjct: 321 GLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYLKTIERVTKQR 380

Query: 367 VVWEPAPSVEAIRER 381
           +  E  P+V  +  R
Sbjct: 381 IAIEKIPTVADLHAR 395


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 267/520 (51%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  AI  I+   
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 TKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSE 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +  SS +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSS 495


>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 493

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +S+ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITESLAGGQIDMYRDLLQRYETE 416


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 239/433 (55%), Gaps = 22/433 (5%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK F +    P+V+ +A++E G+   T +Q   +   L  KD++  AQTG+GKT AFGL 
Sbjct: 1   MKNFADFGLEPRVL-QAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  E +R       +AL + PTRELA+QV  E+  L    G+      GG  + R+
Sbjct: 60  LIHKIAKEEERI------VALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P
Sbjct: 114 IRALKRKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ L+FSAT+   I  LA  + K+   V++  ++     ID   + V    +  A+  
Sbjct: 174 EERQTLLFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V
Sbjct: 234 LLDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +  FV P+ M    
Sbjct: 294 LVATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLY 353

Query: 357 --ERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAK 410
             ER+ R     +  +P P++ EAI  +  QRI+ + +     QG   + K +   LL +
Sbjct: 354 FIERVTRH---RIPRKPLPTIAEAIEGK--QRIIAERVLEIIEQGELTEYKGLAIQLLEQ 408

Query: 411 HDPEKIAAGFLRI 423
           +D  ++ A  ++I
Sbjct: 409 YDSVQLLAAAMKI 421


>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
 gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 474

 Score =  231 bits (588), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/378 (37%), Positives = 217/378 (57%), Gaps = 22/378 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L E GY  +T VQ   L   L   D +V A TGSGKT AF L L + L A+
Sbjct: 27  NLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLAKLEAK 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVHRERRDLQ 122
           +  FSP     AL + PTRELA QV  E+  L AK+ +   ++ +C GG     +   L+
Sbjct: 87  S--FSPQ----ALVLCPTRELAHQVADEVRKL-AKSMLNIKILTLC-GGEPSRIQTNSLE 138

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAH++VGTPGR+ DH+  + +++S L  +VLDEAD ML++GF+D +  I+   PK R+ 
Sbjct: 139 HGAHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQT 198

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILR 240
           L+FSAT    I  LA+     A  +    E    +      +  A+++ D+A  ++N+L 
Sbjct: 199 LLFSATYPKNIAALAEQVTTKARNIEAIQE---QAKPQIEQLFYAMNNEDSAQLVMNLLG 255

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +N +VFC+T+  V      L  + F V+AL GEL Q++R  A+    +G ARV IA
Sbjct: 256 DHQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIA 315

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAE 357
           TDVA+RG+D+ +L+LVI   ++ + +   HR GRTGRAG++G+++ +I +      R  E
Sbjct: 316 TDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLE 375

Query: 358 RLFREANVSVVWEPAPSV 375
             F E    +  +PAP++
Sbjct: 376 DTFAE---PIQVKPAPAL 390


>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
 gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
          Length = 557

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++   ++  GY   +++Q+  +   +  +D++  AQTG+GKT AF L +   + 
Sbjct: 11  FNLNPNILAAVIAT-GYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCI- 68

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
                  PA   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 69  ------DPAKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     +S +  +VLDEADEML LGF DD+E I  + P  R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCTPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464
            +AA  LR    G    L A E+  P+   +     R +    +   G R+        +
Sbjct: 419 ALAAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPVPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/376 (36%), Positives = 213/376 (56%), Gaps = 12/376 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E ++  GY  +T +Q+  L   L  KDV+   +TGSGKT  F L + S L  +  
Sbjct: 12  PELL-ETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVLSNLNVKRF 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAH
Sbjct: 71  RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +N+  L  +VLDEAD MLD+GF D I+ I+ ++P +R+ L+FS
Sbjct: 125 ILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPTQRQSLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT    I TLA+    +   V + S   + + I+ R   L    ++DNA+  +L  H  +
Sbjct: 185 ATFPANIKTLAEKVMSEPEMVKVES-THETTTIEQRFYALEGSEEKDNALETLLLVHKPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V   T  L    F VV L G++ Q+ER  AL M  +    + +ATDVAA
Sbjct: 244 SSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSILVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R ER+  E  +
Sbjct: 304 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVERI--EDYM 361

Query: 366 SVVWEPAPSVEAIRER 381
           ++ +  +P  E   ER
Sbjct: 362 ALDFNASPLPEKPVER 377


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 268/520 (51%), Gaps = 43/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A+ + G+   T +Q   +   L  KDV   AQTG+GKT AFG+ +  T+   
Sbjct: 10  NISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILETV--- 66

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122
                P++  L A+ + PTRELA+QV  E++ L  Y +   ++ V  GG  + R+ + L+
Sbjct: 67  ----DPSNRDLQAVILCPTRELAIQVAEEMKKLSKYMRKIGILPVY-GGQPIERQIKALK 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++GTPGR+ DH+R   +++  +K ++LDEADEMLD+GFR+DIEF+LD  P +R++
Sbjct: 122 KGVQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQI 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+SP I  + + YQ+    + +  +     +I      V    + + +  +L  +
Sbjct: 182 LLFSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKMKLDVLSRLLDIN 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K ++VFC+T+  V +    L    +    L G++SQ++R N +   R G   + +ATD
Sbjct: 242 DFKLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ ++E V + ++ ++ E  +HR GRTGRAG+ G++   +      +   + R 
Sbjct: 302 VAARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRDIMRY 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAK-HDP 413
               +  +  PS   + E      ++   FL+ I+         +E +MV+ ++ + +  
Sbjct: 362 TKTKIEQQQIPSASDVAE------IKTTNFLEKIKRIINNDNIDNEVRMVEKMMEEDYSS 415

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            + AA  L+I        E+    +  +    + D       G  S     G     +++
Sbjct: 416 VETAAALLKI------VMEKSGTTTKTTSSQDYGD------TGAAS-----GQVRLFINI 458

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G K K + R ++  +   +G++  +IG + +    +FVEV
Sbjct: 459 GRKDKVKVRDIIRAIADKTGLSSSAIGKVDIFDKFSFVEV 498


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/346 (39%), Positives = 197/346 (56%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL E+G+   TS+Q+A +   L +  DV+  AQTG+GKT AFGL +  T+  E  +   
Sbjct: 21  QALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLPIIETVKPERRQIQ- 79

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELA+QV  E+  L     + +A   GG S+  + + L+ G HI VGT
Sbjct: 80  -----ALILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQIQKLRRGVHIAVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I    L++SHL+ VVLDEADEML++GF +DIE IL  +P ++RML+FSAT+  
Sbjct: 135 PGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTPAEKRMLLFSATMPR 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK Y      V      +  S  D     V  +D+  A+  ++        +VFC
Sbjct: 195 PILNLAKRYMSTYEHVVAEQTQKTTSLTDQIYYEVREADKFEALCRVIDITPDFYGVVFC 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+      T+ L    +   AL G++SQ +R   L   R  R  + +ATDVAARGID+ 
Sbjct: 255 RTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNILVATDVAARGIDVQ 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           +L  VI+  L  +PE+ +HR GRTGRAG++G ++ F+ P   ++ A
Sbjct: 315 NLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLA 360


>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
 gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
          Length = 468

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/344 (39%), Positives = 200/344 (58%), Gaps = 12/344 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L + GY+++T +Q A L   L  KD++  A+TGSGKT AFGLAL + L A  
Sbjct: 13  LPAHVLANLQQLGYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLNAR- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            RF    A  A+ + PTRELA QV  E+  L  A+  + V    GGV +  +   LQNGA
Sbjct: 72  -RF----AVQAMVLCPTRELADQVATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+  + L++  L  +VLDEAD MLD+GF +DI  +    P +R+ L+F
Sbjct: 127 HIVVGTPGRIMDHLERETLDVDALNTLVLDEADRMLDMGFYNDIATVAKQCPDERQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRY 241
           SAT    I  L++ + K+   + + +++ + S I  R   V  SDRD    NA+  +L +
Sbjct: 187 SATYPEGIAKLSQQFMKEPQTITVQAQH-EKSKIRQRWYEVPESDRDEARLNAVALLLNH 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +   + + FC+T++        L    F  +AL GEL Q+ER   L    +    V +AT
Sbjct: 246 YRPASTLAFCNTKSQCRALVAYLKNKGFSALALYGELEQRERDQVLVQFSNRSCSVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+D+  LE+VI+ +++ + E  +HR GRTGRA  +G ++
Sbjct: 306 DVAARGLDISQLEMVINVDVTPDAEVHIHRIGRTGRADEEGWAI 349


>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
 gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
          Length = 459

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 214/393 (54%), Gaps = 13/393 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + S L  +  R    
Sbjct: 17  ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 75  ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I+D++PK+R+ L+FSAT   
Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTLLFSATFPE 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+   +    + + S +   S   Y   +     RD A+ N+L  H  ++A+VFC
Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L    F VV L G+L Q+ER  AL    +    + +ATDVAARG+D+ 
Sbjct: 251 NTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+    ++ VV   
Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 371 LPA------KSTQQPYQAKMVTINIDGGKKQKV 397


>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
 gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
          Length = 557

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++   ++  GY   +++Q+  +   +  +D++  AQTG+GKT AF L +   + 
Sbjct: 11  FNLNPNILAAVIAT-GYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCI- 68

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
                  PA   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 69  ------DPAKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     +S +  +VLDEADEML LGF DD+E I  + P  R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCTPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FK 464
            +AA  LR    G    L A E+  P+   +     R +    +   G R+        +
Sbjct: 419 ALAAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 170/519 (32%), Positives = 266/519 (51%), Gaps = 45/519 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFG+ L        +R  
Sbjct: 15  ILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGIPLL-------ERID 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P    +  + + PTRELA+QV  EL  L + K G+ V    GG  + R+ + L+ GA +V
Sbjct: 68  PREKDIQGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPIDRQFKALRRGAQVV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+    +N+S ++  VLDEADEMLD+GFRDDIE IL   P + + + FSAT
Sbjct: 128 VGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQVPGEAQTVFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  +A+ + K    + +  +      I+     V    +  A+  +L  +  K AI
Sbjct: 188 MPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEALCRVLDLYNPKRAI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCST+  V   T+ L    +Q   L G L+Q +R   +   R     + +ATDVAARGI
Sbjct: 248 VFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGIEILVATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR-RAERLFREANVS 366
           D+ D+E V++ ++ +  E+ +HR GRTGRAGR G +  FV  ++  + R  + F +A+  
Sbjct: 308 DVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYKLRDIKKFTKAH-- 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----KIAAGFL 421
           +V    P+   +      ++L +      I+ G+ +K  D++ +  D +     +AA  L
Sbjct: 366 IVQHQVPTSSDVATVKTNQLLAE--VRRHIEAGELEKYTDIVESFLDEDVTTVDMAAALL 423

Query: 422 RI---HRAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           ++      G   P  E TP                   G G+     G     L+VG K 
Sbjct: 424 KLLMRRELGDAVPGGEKTP------------------AGTGAE---PGMVRLFLNVGRKM 462

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +  AR ++  +   +GI  + IGAI ++  ++FVEV AD
Sbjct: 463 RVTARDIVGAIAGETGIPGRMIGAIDIRDRVSFVEVPAD 501


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 175/555 (31%), Positives = 281/555 (50%), Gaps = 44/555 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+++ GY + + +Q A +   L   DV+  AQTG+GKT AF + + S +  E+ 
Sbjct: 22  PAVL-KAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPILSKIDTESR 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL +APTRELA+QV        A+  V V    GG S   +   L+ GA +
Sbjct: 81  NTQ------ALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQV 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +++ +FSA
Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L        
Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAM 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +ATDVAARG
Sbjct: 255 IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVATDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364
           +D+  +  V++ ++  +PE+ +HR GRTGRAGR G + +FV P  +++    ER+ R+  
Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372

Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414
             +V    PSV+ + E+   +        L  P   LF   ++G E+   DV +A     
Sbjct: 373 -KLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERDH-DVPMA----- 425

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD----SRAFKVGGGSRDNFKGSSWFS 470
            IAA      R G    EE         + R R D    S A +     R+     + + 
Sbjct: 426 DIAAALALQSRNG----EEFLMTEPPPEKRRERPDRGDRSDAPR---KPRERRSDLATYR 478

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           ++VG + K     ++  +    G++R   G I ++ D + VE+ A    + +  L+ T  
Sbjct: 479 IAVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGNTLKALQNTKI 538

Query: 527 LDKGIQLKYLGGEKP 541
             + IQL+   G KP
Sbjct: 539 QGQLIQLQPDRGPKP 553


>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
 gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 220/391 (56%), Gaps = 16/391 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L  RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  + 
Sbjct: 140 LPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 199

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           +    +      P  L +APTRELA QV +E++        + +VC+ GGVS   ++  L
Sbjct: 200 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIK---ESAPYLSSVCVYGGVSYVTQQSAL 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D ++G  L +  ++ +VLDEAD+ML  GF +D+E IL++ P KR+
Sbjct: 257 SRGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQ 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR- 240
            ++FSAT+   +  LA+ Y  + +++++  +  Q   +     L ALS    +   IL  
Sbjct: 317 SMLFSATMPTWVKKLARKYLDNPLQIDLVGD--QEEKLAEGIKLYALSATAASKRTILSD 374

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               Y      I+F  T+      +  L   +    AL G++SQ +R   L   R G+  
Sbjct: 375 LVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASE-ALHGDISQHQRERTLNGFRQGKFT 433

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P+++L+IH EL ++ E  +HRSGRTGRAG++G ++ +   + +R  
Sbjct: 434 VLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTV 493

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
             L R+A     +   P++E + E  A++++
Sbjct: 494 RSLERDAGCKFEFVSPPAIEEVLESSAEQVV 524


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 166/518 (32%), Positives = 257/518 (49%), Gaps = 42/518 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I  A+ + G+   T +Q+  +    +  DV+  AQTG+GKT AFG+    TL    
Sbjct: 34  ISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGI---PTL---- 86

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P    + AL ++PTREL +Q+  EL  L   + G+ +    GG  + R+   L+ G
Sbjct: 87  EKIDPLDKHVQALILSPTRELTIQIAEELSKLARYRRGIAILPIYGGQPIERQFDALRRG 146

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+GTPGR+ DH+R   L   H+K VVLDEADEMLD+GFRDDIE IL ++P  R+  +
Sbjct: 147 VQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDRQTTL 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  I  L K +QK    V +  +    + ++     V  S +  A+  +L  +  
Sbjct: 207 FSATMSQPILELTKRFQKSPKMVKVTHKELTVAAVEQIYYEVRESLKLEALARLLDIYNP 266

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  ++FC+T+  V      L    +   AL G+L Q +R   +   R G   + +ATDVA
Sbjct: 267 KLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILVATDVA 326

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      +   + R  N
Sbjct: 327 ARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDIQRYTN 386

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDEK--KMVDVLL-AKHDPEK 415
             V+    P++  + E      ++  LF+D ++      G EK   M++ L+   +    
Sbjct: 387 TRVIQAQVPTLSDVEE------IRTTLFIDKVKTIVDAGGLEKYVSMIEKLMRDDYASLD 440

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  L++        E  T     +  D        FK  G       G   F L+VG 
Sbjct: 441 IAAALLKMRM------ERDTKEETAAEPD--------FKNTGAE----AGMVRFFLNVGR 482

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                A+ ++  +   +GI  +SIGAI +    +FVEV
Sbjct: 483 NHNVRAKDILGAIAGETGIPGKSIGAINIFDSYSFVEV 520


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 174/558 (31%), Positives = 292/558 (52%), Gaps = 40/558 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L  + +++ P  
Sbjct: 20  ALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKL--DLNQYKPQ- 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 77  ---AIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++      VLDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEI-- 371

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGD---EK--KMVDVLLA--KHDPEKIAAGFLR 422
              P  + + E    R+ Q  + L++ +     EK  ++V+ L A  + D   +AA  L+
Sbjct: 372 -QLPHRDKVAE---ARLSQLAIELEAEKEHASLEKFAELVEKLQASLEIDANTLAAILLK 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-----GSSW--FSLSVGS 475
             + G      +    ++   +R +   R  +  GG R + +      + W  + L VG 
Sbjct: 428 -RQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531
            Q  + + ++  L    G+ + SIGAI++    TFV++    SAD    LR+       I
Sbjct: 487 DQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL-----RI 541

Query: 532 QLKYLGGEKPDFRGYKSS 549
           + K +G    DF  ++ S
Sbjct: 542 RQKEVGAVVCDFDDFRES 559


>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
 gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
          Length = 494

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 203/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 22  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 202 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 368


>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 731

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 168/539 (31%), Positives = 276/539 (51%), Gaps = 49/539 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   + +QEA +   L  +DV+  AQTG+GKT AF L   S L   +D    A+
Sbjct: 86  AVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRLAEASDVNGRAN 145

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  LA+APTRELA+Q+    +      G V V    GG     +   L+ GA +VVGTP
Sbjct: 146 APQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSALRRGAQVVVGTP 205

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++S L+ +VLDEADEML +GF ++++ IL S+P  ++  +FSAT+ PA
Sbjct: 206 GRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASKQTALFSATMPPA 265

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++  Y      V ++ ++   + I  R + V    +  A+  IL     +  I F  
Sbjct: 266 IRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRILETEDHEGVIAFVR 325

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TRA      + L    F+ VA+SG+++Q++R   ++ ++ GR  + +ATDVAARG+D+  
Sbjct: 326 TRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVATDVAARGLDVER 385

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369
           +  VI+ ++  + E+ +HR GRTGRAGR+G +V F+ P+   + ++ ER  R+    +  
Sbjct: 386 ISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMAV 445

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKM------VDVLLAKH--DPEKI 416
                V A R+R          F D I     +  E+++      V   + +H  +P ++
Sbjct: 446 PSVADVNAARKR---------RFADGITRTLERASEEELAVFGEIVAAYVDEHEAEPTRV 496

Query: 417 AAGFLRIHRAG--LCAPEEITPVSLVSGRDR-----------------FRDDSRAFKVGG 457
           AA    + + G  L A E+  P     GR+R                    D R  +  G
Sbjct: 497 AAALGMMAQGGRPLLAREQEIPFG--GGRNRKDRDGGREGGRDGGRERGTSDGRGSR--G 552

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +R+   G++ + ++VG + +     ++  L    G+   +IGAI ++ + + VE+ AD
Sbjct: 553 PAREPAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPAD 611


>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 619

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 169/537 (31%), Positives = 273/537 (50%), Gaps = 50/537 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +A+ E G+   T +Q A +   +  +DV+  AQTG+GKT AFG+     + AE 
Sbjct: 75  ISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGIPAIEHVNAE- 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
           DR +       L + PTRELA+QV  +L  L   K G++V+   GG S  R+  +L+ G 
Sbjct: 134 DRNTQV-----LILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYERQFANLKRGT 188

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHI  K L + ++  V+LDEADEML++GFR+DIE IL  + + R+ ++F
Sbjct: 189 QIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSFAKEDRQTVLF 248

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  + K +Q D   V +  +   +++I+    LV    +   +V ++  H  +
Sbjct: 249 SATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYYLVKKEAKFELMVRLIDVHDLQ 308

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC+T++ V    + L  + +    L G++ Q  R+  +   R+G  ++ +ATDVAA
Sbjct: 309 LMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNTKILVATDVAA 368

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  ++ VI+ +L  + E  +HR GRTGRAG+ G +   I +  + R   L +   V
Sbjct: 369 RGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSRMRDLEQYTKV 428

Query: 366 SVVWEPAPS------------VEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK- 410
           ++     P+            VE IRE     I++D  P F        +K+VD L  + 
Sbjct: 429 AIPQGKIPTSADLEKSRINKFVEKIRE----NIVEDTNPAF--------EKIVDQLKEEG 476

Query: 411 HDPEKIAAGFLRIH----RAGLCAPEEITPVSLVSGR-DRF----RDDSRAFKVG----- 456
               +I +  +++     R      E+I   +   GR +RF    R + R F        
Sbjct: 477 FYTHQIISALMQMQMGAVRKSSFRDEDIADEA--RGRNERFASKERGNRREFSRDRKPSF 534

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           GG R   +G +   +++G K       ++  +   + I  + IG I +    +FVEV
Sbjct: 535 GGGRSAEEGMTRLFINLGRKDNVSPNHIVGAIASEAKIPGRVIGQIDMYDKFSFVEV 591


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 197/346 (56%), Gaps = 8/346 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+  NI   I EA+ + G+   T +QE ++      +D++  AQTG+GKTVAFG+  
Sbjct: 1   MALFKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPC 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ E         P AL + PTRELA+QV  EL  L    G+      GG  + R+ 
Sbjct: 61  VEQVVVEEKH------PQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    I+V TPGR  DH+R K +    LK VVLDEADEML +GF +DIE IL   P 
Sbjct: 115 TALKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPG 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P + T+A  +    V + + ++     +I+ R + ++  ++ + + N+
Sbjct: 175 ERQTLLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   T+ L+   F V  L G++ Q+ R   ++  + G   V 
Sbjct: 235 LDMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +ATDVAARG+D+ D+  VI+ +L  + E+ +HR GRTGRAG+KG+S
Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGIS 340


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 162/543 (29%), Positives = 273/543 (50%), Gaps = 49/543 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L         +  P S
Sbjct: 18  AVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLLQ-------KVDPKS 70

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             L A+A+ PTRELA+QV  E+  L     GV V    GG  + ++ R L++G  I++GT
Sbjct: 71  KKLQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKDGTQIIIGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K +   H+  VV+DEADEML++GF +D+E IL   P+ R+ +MFSAT+  
Sbjct: 131 PGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQTVMFSATMPQ 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A  +QK+ V V +  +      +      V    +   +  +L  +  K ++VFC
Sbjct: 191 AIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYAPKLSVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAARGID+ 
Sbjct: 251 NTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDILVATDVAARGIDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           D+E V + +L  + E  +HR GRTGRAGR+G++  FV+ + + +  + + R     ++ +
Sbjct: 311 DVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD-IQRYCKTKIIPQ 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE-----KIAAGFLRIH 424
             PS+  +      +IL++    D+I + D  +M+++L  K   E      +AA  L++ 
Sbjct: 370 AIPSLNDVTGIKVDKILEN--VADTIEESDLSEMINILEKKLLEEDYTSLDLAAALLKMM 427

Query: 425 RAGLCAPEEIT----PVSLVSGRDRF-----------------RDDSRAFKVGGGSRDNF 463
                  E+I     P SL      +                   DSR     GG  D  
Sbjct: 428 MGE--ENEDIIDTREPRSLDELDSYYRGENRNGNGRGRGRNGGGRDSR---YEGGRED-- 480

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D + +
Sbjct: 481 --MARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQ 538

Query: 524 TVK 526
            +K
Sbjct: 539 AMK 541


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 164/528 (31%), Positives = 280/528 (53%), Gaps = 30/528 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +  A+++ G+   T +Q   +      +DV+  AQTG+GKT AFGL + 
Sbjct: 4   MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             ++  +D+   A     + + PTRELA+QV  EL+ L   K G+ +    GG  + R+ 
Sbjct: 64  D-MIDTDDKNQQA-----IILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GTPGR+ DH+R   L + + K VVLDEADEMLD+GFR+DIE IL+ +PK
Sbjct: 118 HALKRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSATI   I  LA+ Y  +   + +  +      ++     V   D+  A+  +
Sbjct: 178 ARQTLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + ++    A+VFC+T+  V    + L    +    L G++SQ +R   +   ++G   + 
Sbjct: 238 IDFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           +ATDVAARG+D+ D+++V++ ++  N E  +HR GRTGRAGR G +  FVI +++ +  +
Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLL-AKHDPE 414
            + R AN  ++    PS+  + E     +L+    +  D   G   + ++ L+  ++   
Sbjct: 358 -IQRYANTKILRREIPSLLDVEETRINLLLEKVKQVVDDGGLGKYNQWIERLMEEEYTSL 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            +AA  L+I                V G+D  ++   + ++   S     G +   +++G
Sbjct: 417 DLAAALLKI----------------VLGKDGEQEQPESSELDIESTGGDSGMARLFINIG 460

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLL 521
             QK  A+ ++  +   +G+  + IG+I +    TFVEV A+  VD+L
Sbjct: 461 RNQKIRAKDIVGAIAGETGMPGKLIGSIDIYDKFTFVEVPAEYAVDVL 508


>gi|308080376|ref|NP_001183357.1| hypothetical protein LOC100501766 [Zea mays]
 gi|223949963|gb|ACN29065.1| unknown [Zea mays]
 gi|238010976|gb|ACR36523.1| unknown [Zea mays]
          Length = 483

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 205/347 (59%), Gaps = 9/347 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           ++ +D++  A+TG+GKT+AFG+ +   ++  N+++ P   PLA+ +APTRELA QV RE 
Sbjct: 1   MQGRDMVGRAKTGTGKTLAFGIPIMDAIIRHNEKYKPGKFPLAIVLAPTRELAKQVERE- 59

Query: 95  EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
              +  +  +  +C+ GG  + ++ R L  G  +V+GTPGR+ D ++   L+++ ++ VV
Sbjct: 60  ---FLDSSPLETLCVYGGTPIMQQIRKLNYGVDVVIGTPGRVIDLLKRGSLSLAEIRFVV 116

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEAD+ML +GF  D+E IL+  P +R+ LMFSAT+   I  L + Y  + V V++  E+
Sbjct: 117 LDEADQMLSVGFDLDVETILERVPPQRQTLMFSATMPTWIRKLTQKYLNNPVTVDLVGED 176

Query: 214 RQHSDIDYRAVLVALSDRDNAIV--NILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQ 270
            Q        + V+  +R+   V   +++ H      IVF  T+    R +  ++   FQ
Sbjct: 177 DQKLAEGISLLAVSSENREKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSHNMSRS-FQ 235

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             AL G++SQ +R   L   RDGR  + IATDVAARG+D+P+++LVIH EL ++ E  +H
Sbjct: 236 CEALHGDISQSQRERTLAGFRDGRFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVH 295

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           RSGRTGRAG+KG ++ +   +  R    + R+        P  +V+ 
Sbjct: 296 RSGRTGRAGKKGTAIVMYNYDQSRAVRVIERDVGCKFTELPKITVDG 342


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/405 (34%), Positives = 221/405 (54%), Gaps = 22/405 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+   + +Q   +   +  +D++  AQTG+GKT AFGL L         +  P  
Sbjct: 18  AITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLLQ-------KVDPKV 70

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             L A+ + PTRELA+QV  E+   +AK   GV V    GG  + ++ R L++G  ++VG
Sbjct: 71  KKLQAIVLLPTRELAIQVAEEMRR-FAKFMHGVKVLPIYGGQDIVKQIRSLKDGTQVIVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R K + + H+  VVLDEADEML++GF +D+E IL   P++R+ LMFSAT+ 
Sbjct: 130 TPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  +A+ +QKD V V +  +      +      V   ++   +  +L  +  K +IVF
Sbjct: 190 QAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMSRLLDMYAPKLSIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAARGID+
Sbjct: 250 CNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R     ++ +
Sbjct: 310 GDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQRYCKTKIIPQ 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAK 410
             PS+  I E   ++I      LD +Q      D  KMV+++  K
Sbjct: 370 AIPSLNDITEIKVEKI------LDQVQEVLNDTDLTKMVNIIEKK 408


>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
 gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 213/393 (54%), Gaps = 13/393 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + S L  +  R    
Sbjct: 17  ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 75  ----SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I+D++PK+R+ L+FSAT   
Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPKQRQTLLFSATFPE 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+   +    + + S +   S   Y   +     RD A+ N+L  H  ++A+VFC
Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L    F VV L G+L Q+ER  AL    +    + +ATDVAARG+D+ 
Sbjct: 251 NTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+     + VV   
Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPAT 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 371 LPA------KSTQQPYQAKMVTINIDGGKKQKV 397


>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 466

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 202/346 (58%), Gaps = 4/346 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66
           P+++ +AL+E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL   +
Sbjct: 19  PELL-KALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLLQKLLPLAS 77

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L+ G 
Sbjct: 78  SSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQTPHLKTGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF  D++ IL   PK+R+ LMF
Sbjct: 138 EVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLPKQRQNLMF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA  +      + +A  N  + ++  +   VA SD++  ++ +L+   A 
Sbjct: 198 SATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEVAQSDKETLLIQLLKAANAS 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ + SR ++ LA       A+ G+ +QQER  AL   + G     +ATDVAA
Sbjct: 258 QVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGTITALVATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           RG+D+ +L +VI+ E+ S PE+ +HR GRTGRAG  G+++ FV P+
Sbjct: 318 RGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPE 363


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 195/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  +N      +   AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AI+F  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIIFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 160/516 (31%), Positives = 270/516 (52%), Gaps = 23/516 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   P+ 
Sbjct: 85  ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 144

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL +APTRELA+QV  E    YAK      V    GG +   +   L+ GA +VVGT
Sbjct: 145 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 203

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    L++S L+ +VLDEADEML +GF DD+E I   +P+ R++ +FSAT+  
Sbjct: 204 PGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVALFSATMPG 263

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I F 
Sbjct: 264 QIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRILEVEEFDGVIAFV 323

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D+ 
Sbjct: 324 RTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 383

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  VI+ ++  + E+ +HR GRTGRAGR G ++ F+ P+   + R  E+  R+    + 
Sbjct: 384 RISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 443

Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421
              A +V  +R  + A+RI +      +++ ++      L++ ++ E      +IAA   
Sbjct: 444 LPTAETVNTLRLGKFAERITE------TLESEDVAAFRDLISSYEEEHNVPASEIAAALA 497

Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            + + G     +E+        R+R +D    F   G +R   +G++ + ++VG +Q+  
Sbjct: 498 VMAQGGQPLLVKELPAAPEYQKRERSKD---GFGSRGPTRALTEGNATYRIAVGRRQRVM 554

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              ++  +    GI+   IG I ++ D + VE+ AD
Sbjct: 555 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPAD 590


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 9/370 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   GY  +T +Q   L   L+ KDV+   +TGSGKT AFGL L + L  +  RF   
Sbjct: 17  QNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK--RFRVQ 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S    L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAHI+VGT
Sbjct: 75  S----LVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+FSAT  P
Sbjct: 131 PGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATFPP 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVF 250
            I ++A     D +    A E  +++ I+     V    DR  A+  +L  H  ++ ++F
Sbjct: 191 QIKSIADRIMNDPIMTK-AEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L  + F V AL G+L Q++R  AL    +    + +ATDVAARG+D+
Sbjct: 250 CNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L+ V++ ELS +PE  +HR GRTGRAG KG+++ +  +       ++    N+ +  E
Sbjct: 310 ESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMNIDIRDE 369

Query: 371 PAPSVEAIRE 380
             PS + ++E
Sbjct: 370 ALPSTDYLKE 379


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/338 (39%), Positives = 194/338 (57%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  GY   T +Q   +   L  +DV+  AQTG+GKT AF L +        +R + A  
Sbjct: 17  LSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPMI-------ERVTDALV 69

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTRELAVQV   +        + V    GG  + R+ R L  G  +VVGTPGR
Sbjct: 70  VQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQLRGLAQGTQVVVGTPGR 129

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH++   L   HL+ VVLDEADEMLD+GF +++E IL  +P +R+  +FSAT+ PA+ 
Sbjct: 130 VLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPTERQTALFSATLPPAVQ 189

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L   Y +  VRV+IA+E      I      V   D+ +A+  +L     + AIVFC TR
Sbjct: 190 NLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLARDKLDALCRVLDAEMPQLAIVFCRTR 249

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + L    +   +L G+LSQ  R   ++  R+G+  V +ATDVAARG+D+ ++ 
Sbjct: 250 QEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVLVATDVAARGLDIAEVS 309

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            VI+ ++ ++PE+ +HR GRTGRAGR+G+++ F+ P+ 
Sbjct: 310 HVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRE 347


>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 199/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSEQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQ 368


>gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
          Length = 457

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V + ++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 309 AARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 212/378 (56%), Gaps = 11/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+ + G+   T +Q   +   +  KDV+  AQTG+GKT AFG+     L  +
Sbjct: 10  NLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPALEMLDVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +         L + PTRELA QV  E+  L       +    GG  + R+ + L+ G 
Sbjct: 70  SKKVQ------VLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALRRGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ DH++ K L +  +K VVLDEADEMLD+GFR+DIEFIL  +P K++ ++F
Sbjct: 124 HIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQTVLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K YQ++   V    +      I+     V  + +   +  ++  +  K
Sbjct: 184 SATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQIEQYYFEVKDNAKTEVLCRLIDIYNFK 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+ +V +  + L    + V  + G++ Q +R   +   R G     +ATDVAA
Sbjct: 244 SSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+  +E V + ++  + E+ +HR GRTGRAG++G+++ F   +++ R+ + + +  N
Sbjct: 304 RGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDI-RKIKTIQKHTN 362

Query: 365 VSVVWEPAPS---VEAIR 379
           V +V +  PS   VE IR
Sbjct: 363 VKIVRKNVPSQSDVEDIR 380


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 208/370 (56%), Gaps = 9/370 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   GY  +T +Q   L   L+ KDV+   +TGSGKT AFGL L + L  +  RF   
Sbjct: 17  QNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK--RFRVQ 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S    L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAHI+VGT
Sbjct: 75  S----LVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+FSAT  P
Sbjct: 131 PGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLLFSATFPP 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVF 250
            I ++A     D +    A E  +++ I+     V    DR  A+  +L  H  ++ ++F
Sbjct: 191 QIKSIADRIMNDPIMTK-AEETVENTSINQHFFKVGDFEDRLEALQILLLKHQPESTVIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L  + F V AL G+L Q++R  AL    +    + +ATDVAARG+D+
Sbjct: 250 CNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L+ V++ ELS +PE  +HR GRTGRAG KG+++ +  +       ++    N+ +  E
Sbjct: 310 ESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMNIDIRDE 369

Query: 371 PAPSVEAIRE 380
             PS + ++E
Sbjct: 370 ALPSADYLKE 379


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 203/352 (57%), Gaps = 8/352 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   L   L  +DV+  A TGSGKT AFG+ L   +  +  +FS  S    L
Sbjct: 21  GFTEPTDIQTRALPHCLAGQDVIALAHTGSGKTAAFGIGLIEHV--KPKQFSVQS----L 74

Query: 79  AIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV + L E   A+  + +    GGVS+  +   L +GAHIVVGTPGR+ D
Sbjct: 75  VLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQIGSLAHGAHIVVGTPGRIAD 134

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H++   L +  +  VVLDEAD MLD+GF++ +E IL  +P +R+ L+FSAT   +I  L+
Sbjct: 135 HLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENILSHAPAQRQTLLFSATWPESIRKLS 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             +Q++ V V   +E + +SDI      ++ + R  AIV +L  H   + +VFC+ +   
Sbjct: 195 AGFQREPVDVRAQTE-KMNSDIAEVFYEISGNQRTRAIVALLSQHQPTSCLVFCAMKHQC 253

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L++  F  +AL G+L Q++R + L    +   +V +ATDVAARG+D+  L LV+
Sbjct: 254 DELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQVLVATDVAARGLDIKSLPLVV 313

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +AE + +PE   HR GRTGRAG +G++V +   +   +  RL  E   +V+W
Sbjct: 314 NAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKINRLESERGATVIW 365


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score =  230 bits (586), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416


>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 529

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 166/525 (31%), Positives = 268/525 (51%), Gaps = 35/525 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I +A+ + G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L   + A 
Sbjct: 10  DISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLEEMDAN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
                    P A+ + PTRELA+QV  EL+ L  Y K    + V  GG S+ R+ R L  
Sbjct: 70  K------KDPQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVY-GGQSIQRQIRALNK 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+GTPGR+ DHIR   L ++ +   VLDEAD MLD+GF DDIE +L   P+ R+ L
Sbjct: 123 GVQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI  +I  L++ YQK++  + +A E      I+     +   D+  A+  +L  + 
Sbjct: 183 FFSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRHDKLKALTRLLDLNN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVFC+TR  V      L    +   A+ G L+Q +R   +   R+G   + +ATDV
Sbjct: 243 PELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362
           AARGID+ D+E V + +L  + +  +HR GRTGRAG+ G +  FV+ +++ +  + + + 
Sbjct: 303 AARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRD-IQKY 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPE----KIA 417
               +  +  PS + I E   ++  ++   +++S + D  K ++++    D E    +IA
Sbjct: 362 TKTKIKRDKIPSADDIEEAKFEQFNEELSAYIESEKLD--KYIELIENIIDEEFSAIEIA 419

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  ++               +     D  + +S  F   G       G     +++G K 
Sbjct: 420 AALMK------------KSFNKADNDDTEKVESPNFGDTGAE----PGMVRLFINIGKKD 463

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLL 521
           +   R ++  +   +G+    IGAI +  + TFVEV  + G D+L
Sbjct: 464 RISPRHIVGAIAGETGLPGGLIGAIDIYDNFTFVEVPREKGHDVL 508


>gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 471

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 199/348 (57%), Gaps = 2/348 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67
           Q I  AL+E+GY   T +Q   +   L   D+L +AQTG+GKT AF L +L       N 
Sbjct: 33  QEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANA 92

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SPA  P+  L + PTRELA Q+ +  +       +   V  GGV++ ++  DL+ G  
Sbjct: 93  STSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDKQTTDLRTGCE 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV T GRL DHI+ K +N++ ++ VVLDEAD MLD+GF DDI  I+   P+ R+ L+FS
Sbjct: 153 IVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQMLPRPRQTLLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +PAI  LA+++      V +A++N  +++++   + V    +   +  ++       
Sbjct: 213 ATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKRELLERLIVDLQMPQ 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+ S  +  + L        A+ G+ SQQ R + L   + G  RV +ATDVAAR
Sbjct: 273 VIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELRVLVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           G+D+ +L  VI+ EL +  E+ +HR GRTGRAG  G+++ ++  N Q+
Sbjct: 333 GLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQK 380


>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 459

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 13/393 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + S L  +  R    
Sbjct: 17  ETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +L + PTRELA QV +E+  L  +   + V    GG+ +  +   L++GAHI+VGT
Sbjct: 75  ----SLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N+  L  +VLDEAD MLD+GF+D ++ I++++PK+R+ L+FSAT   
Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPKQRQTLLFSATFPE 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+   +    + + S +   S   Y   +     RD A+ N+L  H  ++A+VFC
Sbjct: 191 KIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANLLLTHQPESAVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L    F V+ L G+L Q+ER  AL    +    + +ATDVAARG+D+ 
Sbjct: 251 NTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+    ++ VV   
Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLDMDVVPAT 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 371 LPA------KSNQQPYQAKMVTINIDGGKKQKV 397


>gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 557

 Score =  229 bits (585), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 287/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P ++   ++  GY   +++Q+  +   +   D++  AQTG+GKT AF L +     
Sbjct: 11  FELHPNILAAVIAT-GYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ +
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETK 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464
            +AA  LR    G    L A E    + P +   G    R   R  +     R      +
Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 165/534 (30%), Positives = 274/534 (51%), Gaps = 50/534 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L++ GY   + +Q A +   L  +DV+  AQTG+GKT AF L   S +    D   PA 
Sbjct: 34  SLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSRMAELADTNGPAK 93

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELA+QV       YAK      V    GG     +   L+ GA +VVGT
Sbjct: 94  TPQILVLAPTRELALQVAEAFTS-YAKYLPNFTVLPVYGGSPYGPQLNGLRRGAQVVVGT 152

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    L++S+L+ VVLDEADEML +GF ++++ IL+++P+ +++ +FSAT+  
Sbjct: 153 PGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVALFSATMPR 212

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y ++   V + S+    ++I  R + V  + + +A+  IL     +  I F 
Sbjct: 213 TIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRILESETFEGVIAFV 272

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    F   A++G++ QQ+R   ++ +R G+  + +ATDVAARG+D+ 
Sbjct: 273 RTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAARGLDVE 332

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGRKG ++ F+ P+   + R  E+  R+    V 
Sbjct: 333 RISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLRAIEKATRQ---PVT 389

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLD----SIQGDE----KKMVDVLLAKH---DPEKIA 417
               PS++++ +R  Q+      F D    +I G +    +++V+   ++H   D  +IA
Sbjct: 390 QMQLPSLDSVNDRRIQK------FTDRIDKTISGQDLTTFREIVEKFASEHEDLDQLEIA 443

Query: 418 AGFLRIHRAG--LCAPEEITPVSLVSGRDRF-------------RDDSRAFKVGGGSRDN 462
           A    + + G  L   E   PV   S + R                  RA K        
Sbjct: 444 AALALMAQGGRPLLMTE---PVMSPSKKARMDRPERGGERGERGDRGPRARKTAA----- 495

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +G++ + L+VG + + +   ++  L    G N   IG I ++ D T VE+ A+
Sbjct: 496 -EGNAMYRLAVGRRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLVELPAE 548


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 162/523 (30%), Positives = 264/523 (50%), Gaps = 36/523 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P+V+  A+S+ GY   +++Q A + P L   DV+  AQTG+GKT AF + + S + L   
Sbjct: 32  PEVL-RAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILSKIDLTSK 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D         AL +APTRELA+QV        A    +  + I GG S   +   L+ GA
Sbjct: 91  DT-------QALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLAGLKRGA 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +++ +F
Sbjct: 144 QVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEYKQVALF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  D V + I ++     +I  R + VA   + +A+  IL     +
Sbjct: 204 SATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRILEVETFE 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+ +       L    F   A++G+++Q +R   +  ++ G   + +ATDVAA
Sbjct: 264 AMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILVATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G +V  +    +   + + +    
Sbjct: 324 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAIEKTTGA 383

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEK------ 415
            +  EP PSVE +   +AQR+ +   F D+I       E ++   L+  ++ +       
Sbjct: 384 KLAEEPLPSVEDV---NAQRVTK---FRDAITAALAAPEVELFRRLVEDYERDNNVPVAD 437

Query: 416 IAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           IAA    + R G   L  P+            R     R  +   G R    G + + ++
Sbjct: 438 IAAALAVLSRDGEQFLLQPDP-------PREPRHERGERPDRGPRGERPRTPGLATYRIA 490

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           VG + K     ++  +    G++R   G I ++PD + VE+ A
Sbjct: 491 VGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPA 533


>gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110]
 gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 476

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/336 (40%), Positives = 200/336 (59%), Gaps = 9/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++   L++ GY  +T++Q A L P L  KD++  A+TGSGKT AF LAL S L     
Sbjct: 24  PQMLAN-LTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSNL--NPR 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF    A  A+ + PTRELA QV  E+  L  A+  + V    GGV++  +   L++GAH
Sbjct: 81  RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEHGAH 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DH+  + LN+  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FS
Sbjct: 137 IVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIVKVARQCPKERQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+ + K+  ++ + +++ + S I  R   V  S+R +A+  +L +    +
Sbjct: 197 ATYPEGIAKLAQQFMKNPEQITVQAQH-EGSKIRQRWYQVKESERLHAVSLLLDHFRPVS 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+       +VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 256 TLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  LE VI+ +++ + E  +HR GRTGR G++G
Sbjct: 316 GLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQG 351


>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 606

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 201/353 (56%), Gaps = 12/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   +   I +A++E GY +   VQE ++   L E  DV+  AQTG+GKT AFGL 
Sbjct: 1   MKNFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
           +   +  EN        P +L + PTREL +Q+  +L + Y+K   G+ V    GG S+ 
Sbjct: 61  IIQKVDVEN------RVPQSLVLCPTRELCLQIADDL-YNYSKYIKGLKVIPVYGGSSID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G HI+V TPGRL D +    +++S +K VV+DEADEML++GF + I  IL  
Sbjct: 114 SQIRSLKRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK R  L+FSAT+SP I  ++KNY ++   + I  +N    ++ +    V   D+  A+
Sbjct: 174 VPKDRNTLLFSATMSPEIARISKNYLQNPKEITIGRKNEGSQNVKHVVYKVHAKDKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I  ++     I+FC TR        +L +  +   +L GELSQ +R   +Q  R    
Sbjct: 234 KRIADFYPQIYGIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNI 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAII 346


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 234/432 (54%), Gaps = 22/432 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ +   +  +N           L
Sbjct: 2   GFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNVQ------GL 55

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QV  EL  +     V V    GG  + R+ R ++   HI+VGTPGR+ DH
Sbjct: 56  IIAPTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLDH 115

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L + ++  +VLDEADEML++GF +DIE IL + P  R+ L+FSAT+   I  +A 
Sbjct: 116 INRRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIAN 175

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           N+  D   V++ S+      I+   V     ++ + +  +L     + AI+F  T+  V 
Sbjct: 176 NFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSPELAIIFGRTKRRVD 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    +    + G+LSQ +R   L+  ++GR  V +ATDVAARG+D+  +  V +
Sbjct: 236 ELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVYN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375
            ++  +PE+ +HR GRTGRAG++GM++ FV P+ M   R  E+  +++   +  +P  S 
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQM--KPPTSN 353

Query: 376 EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
           EA+  +  QR+  + L +++++ +E    + M   LL  HD  +I A  LR+    +   
Sbjct: 354 EALEGQ--QRLAMEKL-VETVKSNELQNYRGMAKELLEDHDSVEIVAAALRL----MTKE 406

Query: 432 EEITPVSLVSGR 443
            + TPV +   R
Sbjct: 407 PDDTPVQISEER 418


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 256/521 (49%), Gaps = 45/521 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q   +   L  +D +  AQTG+GKT AFGL +   +++        
Sbjct: 16  DAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILEKVIS-------G 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL + PTRELA+QV  EL  L A K GV +    GG  + R+ R L  GA +VVGT
Sbjct: 69  KGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFRALAKGAQVVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH++   L +  +  VVLDEADEMLD+GFR+DIE IL+ +P   + ++FSAT+ P
Sbjct: 129 PGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDGCQRILFSATMPP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K + ++   + IA +      I+     V    + +A+  +L   G + A+VFC
Sbjct: 189 PIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVLDSQGFRKALVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST+  V   T  L +  +Q   L G+L+Q +R   +Q  R     + +ATDVAARGID+ 
Sbjct: 249 STKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILVATDVAARGIDVD 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D++ VI+ ++  + E  +HR GRTGRAGR G +   +    Q +   + R     +    
Sbjct: 309 DVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRDIIRCTKARIKQGR 368

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            P++  +      R+L++          E+   +V+  LA+  PE    G  R   A L 
Sbjct: 369 LPTLRDVDNIRTSRLLEEVRQTVEAGTPERWLALVEDFLAERFPEGGVTG--REMAAAL- 425

Query: 430 APEEITPVSLVSGRDRFRDDS------------RAFKVGGGSRDNFKGSSW--------- 468
                  + L+  RD    D+            R+   GG SRD   G S          
Sbjct: 426 -------LKLLMQRDFGNQDASREPDVFAEPPRRSAPDGGPSRDARGGDSSNPRGRKNSA 478

Query: 469 ----FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
                 +SVG   K   R L+  +   SGI+ + IGAI ++
Sbjct: 479 PMTKLRVSVGHTHKVSPRELVGAIAGESGISSRDIGAIGIR 519


>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 133/340 (39%), Positives = 201/340 (59%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +AL+E+GYV+ T +Q   +   L+ +DV+ +AQTG+GKT  F L +   LL   +   
Sbjct: 27  ILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQRLLQHASHSA 86

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +   V  GGV +  +   L+ G  IV
Sbjct: 87  SPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTAILRAGVEIV 146

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K +N+S  + +V+DEAD MLD+GF  D++ I++  PK+R+ L+FSAT
Sbjct: 147 IATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLLFSAT 206

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA ++Q + V + +A  N    ++      V  + + +A+  I+R    K  I
Sbjct: 207 FSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFIIRQRELKQVI 266

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+   SR  + L     +  A+ G+ +Q ER  AL+  + G+  V +ATDVAARG+
Sbjct: 267 VFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLVATDVAARGL 326

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 327 DIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLF 366


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
          Length = 457

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 131/356 (36%), Positives = 206/356 (57%), Gaps = 18/356 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A+++  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAVDTIQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESI 364


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 143/406 (35%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQLKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G + +M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIEMYRDLLQRYESE 416


>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
 gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
          Length = 458

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/370 (37%), Positives = 205/370 (55%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L  +
Sbjct: 9   NLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVK 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRVQ------TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++  L  +VLDEAD MLD+GF D I+ I+D+ P+KR+ L+
Sbjct: 123 AHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHG 243
           FSAT    I +LA     +   V + S   Q S I+ +   L    +RD+A+  +L  H 
Sbjct: 183 FSATFPDNIDSLAAKVMVNPEMVKVES-THQKSTIEQKFYKLNTTEERDDALEALLLTHK 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++++VFC+T+  V   T  L    F VV L G++ Q+ER  AL M  +    + +ATDV
Sbjct: 242 PESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    
Sbjct: 302 AARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYM 361

Query: 364 NVSVVWEPAP 373
           ++++     P
Sbjct: 362 DIAINASELP 371


>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
 gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
          Length = 531

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 149/512 (29%), Positives = 258/512 (50%), Gaps = 34/512 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   + +Q   +   +   D++  AQTG+GKT AFG+ L        ++  
Sbjct: 15  IQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGIPLL-------EKVD 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P    L A+ + PTRELA+QV  E+  L     G+ V    GG  + ++ R L++G  IV
Sbjct: 68  PKLKKLQAIVLCPTRELAIQVADEIRNLSRYMHGIKVLPIYGGQDIVKQIRSLKSGTQIV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIEF+L   P++R+ ++FSAT
Sbjct: 128 IGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSGVPEERQTVLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  + K +Q +A  + +  +     +I+     V    ++  +  +L  +  + ++
Sbjct: 188 MPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPKKKEEVLSRLLDIYSPRLSV 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+  V      L    +    L G++ Q++R   +Q  R G+  + +ATDVAARGI
Sbjct: 248 VFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKTEILVATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ ++E V + +L  + E  +HR GRTGRAGR+G +   +      + + + R     + 
Sbjct: 308 DVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYKLKEIQRYCKTKIY 367

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI--QGDEKKMVDVLLAKHDPEK-----IAAGFL 421
            +  PS+  +     + IL D   ++ +  Q D   M++ +  + +  +     +AA FL
Sbjct: 368 AQKVPSLNDVANTKMENILDD---VERVIEQEDLDMMINAIEERVNNSEFTAMDMAAAFL 424

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +I     C   E         ++   +D      G G      G     +++G KQ+   
Sbjct: 425 KI----CCGMTE-------DNKNTEENDWEFGDTGAGE----DGMVRLFINIGKKQRVRP 469

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             ++  +   SG++ + IG I +    TFVEV
Sbjct: 470 GDILGAIAGESGMDGKLIGTIDMYDKYTFVEV 501


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 194/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  +N      +   AL
Sbjct: 20  GFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score =  229 bits (585), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 236/447 (52%), Gaps = 26/447 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ R L+N  
Sbjct: 68  NPNIQ------ALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNKP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P +R+ L+F
Sbjct: 122 QIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPAERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +L  H  +
Sbjct: 182 SATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + +ATDVAA
Sbjct: 242 LAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V FV P+ M     R+  E  
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYL--RIVEETT 359

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--------GDEKKMVDVLLAKHDPEKI 416
              +    P        D   + Q  L LD+++        GD + +   +L  H+   +
Sbjct: 360 KKRMTPLRPPTT-----DEALVGQQRLALDTLEGLIANNNLGDYRTLASEILDNHEAIDV 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGR 443
            A  LR     L    + TPV++   R
Sbjct: 415 VAAALR----SLTKEPDDTPVTISEER 437


>gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 282/554 (50%), Gaps = 40/554 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++   L+  GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +     
Sbjct: 15  PNIVAAVLAT-GYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
                  P AL +APTRELA+QV    E  YAK   GV V    GG  +  + R ++NGA
Sbjct: 73  -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++F
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I ++A+ + ++   V I S+ +  + ID   ++V    +  A++ +L      
Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ +A+ +   +++     PL  ++ +    ++ D L A     P  ++A  L
Sbjct: 367 KVAEARLPNAQAVLDARIKKLTNSLAPLVAEA-EATHGELFDRLTAALGCSPRALSAALL 425

Query: 422 RIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-------------- 463
           R    G    L   E   P+ + +   R R   R  +   G R +               
Sbjct: 426 RKATNGQALDLATVEREQPL-VPTYTPRERSGERTER---GERSDRGDRGDRERRAPMPL 481

Query: 464 -KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
            +G      ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++ L 
Sbjct: 482 AEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLL 541

Query: 523 RTVKLDK--GIQLK 534
             +K  +  G QLK
Sbjct: 542 TKLKDTRVAGKQLK 555


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 210/372 (56%), Gaps = 13/372 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  +  +  
Sbjct: 20  VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P AL +APTRELA+QV    +   +K  G  V    GG    ++   L+ G HIVV
Sbjct: 78  ----PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P KR++ +FSAT+
Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAARG+D
Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ F  P  + M R+ ER  R+    
Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373

Query: 367 VVWEPAPSVEAI 378
           +     PSVEA+
Sbjct: 374 MQL---PSVEAV 382


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 163/534 (30%), Positives = 265/534 (49%), Gaps = 38/534 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q + +A+ + G+   + +Q   +   L  KD +  AQTG+GKT AFGL +       
Sbjct: 9   GLSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPIL------ 62

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +   +  AL + PTRELA+QV  EL  L   K GV V    GG  + R+ R L  G
Sbjct: 63  -EKIASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAKG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DH++   L ++  + VVLDEADEMLD+GFR+DIE IL+ SP   + ++
Sbjct: 122 AQVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRVL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K + ++   + IA +      I+     V    + +A+  +L   G 
Sbjct: 182 FSATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRVLDSQGF 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VFC+T+ SV   T  L +  +Q   L G+++Q +R   +   R     + +ATDVA
Sbjct: 242 RKALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++ VI+ ++  + E  +HR GRTGRAGR+G +   +    Q +   + R   
Sbjct: 302 ARGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIREIIRYTK 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE------KI 416
             +     P++  +      ++L +      +S     + +V+    +H P+       I
Sbjct: 362 ARIQPGQLPTLRDVSNIRTSKLLDEVRQTLAESSLDRWRVLVEDFQTEHFPDGDASSRDI 421

Query: 417 AAGFLRI---------HRAG-----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +A  L++            G       AP+     +    + R +  SR  + G  SR  
Sbjct: 422 SAALLKLLMQRDFGNQDNVGEVDELTMAPQRPAKNAEAKSKGRMQPLSRRQESGPMSR-- 479

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                   + VG       R L+  +   SGI  +S+GAI +Q + + VE+SA+
Sbjct: 480 ------LHIDVGQAHDVTPRALVGAITGESGIPGRSVGAIDIQDNFSIVEISAE 527


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 226/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD V V IA++    + I  R   V    + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPVEVTIAAKTTTSASIRQRYWWVNGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 155/524 (29%), Positives = 265/524 (50%), Gaps = 61/524 (11%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ + G+   + +Q  ++   L+  DV+  A+TG+GKT+A+G  +       
Sbjct: 7   NLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPII------ 60

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+  S       L + PTRELA+QV  EL  +   + V +    GGV + R+ + ++ G 
Sbjct: 61  NNIGSNEGKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ D I+   L ++ +K +VLDEADEMLD+GF DDI+ I++ + K+R+ +MF
Sbjct: 121 DIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQTMMF 180

Query: 186 SATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LAK Y K DA  ++I  +    S + +    V   +R  ++  IL     
Sbjct: 181 SATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC T+  V   T+ +    + V  + G++SQ +R N L+  ++G     +ATDVA
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+  L  + E+ +HR GRTGRA R G++  ++        +R+ RE  
Sbjct: 301 ARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIERETK 360

Query: 365 VSVVWEPAPSVEAIRE-------RDAQRILQD-------PLFLDSIQGDEKKMVDVLLAK 410
             +  +  P+++ I +       +D +R+L++       PL ++    +E  +VDV  A 
Sbjct: 361 CKIRRKELPTIDDIFQVKYNKMIKDIKRVLENDGYKRFVPLAME--LDEEYNLVDVAAAL 418

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D                          +  G++ + +D           D  K    F 
Sbjct: 419 MD--------------------------MYYGKELYYND-----------DEPKYVRLF- 440

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           +++G K K   R L+ +L     I+++ IG I +    TF++ S
Sbjct: 441 INLGRKDKLNRRTLLKLLMDIGDISKEDIGTIDIFDKFTFIDAS 484


>gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 557

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464
            +AA  LR    G    L A E    + P +   G    R   R  +     R      +
Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score =  229 bits (585), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
          Length = 553

 Score =  229 bits (584), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 168/549 (30%), Positives = 287/549 (52%), Gaps = 32/549 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S  GY   + +Q   +   L   D++  AQTG+GKT AF L + S       +  PA 
Sbjct: 20  AISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILS-------KIDPAK 72

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P AL +APTRELA+QV    E  Y+K   GV V    GG  +  + + ++ GA ++V 
Sbjct: 73  REPQALILAPTRELALQVATAFET-YSKQMPGVSVVAIYGGAPMGPQLKAIRQGAQVIVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+      +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ 
Sbjct: 132 TPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  +A+ + ++   + IA++ +  + I+   ++V    +  A++ +L        I F
Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDALIAF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAARGID+
Sbjct: 252 VRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R  N  V   
Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQKVAEA 371

Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426
             P+ + + +   +++     PL  D+ +    +++D L+A     P  +AA  LR    
Sbjct: 372 RLPNAQQVLDARIKKLTSSLAPLVADA-ETTHGELLDKLVADIGCSPRALAAALLRKATN 430

Query: 427 G----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN----FKGSSWFSLSVGSKQK 478
           G    L   E+  P+   SG  R R D R  + G   R       +G +     +G++  
Sbjct: 431 GQALTLAEVEKEQPLVPTSG-PRERSD-RPERSGDRERRAPVPLAEGRARCRTPLGARDG 488

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
             AR L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K  +      +GG
Sbjct: 489 IAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKDTR------VGG 542

Query: 539 EKPDFRGYK 547
           ++   R Y+
Sbjct: 543 KQLKLRRYR 551


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 194/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  +N      +   AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDN------TVIQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEM 348


>gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 476

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 208/376 (55%), Gaps = 8/376 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I + +   GY + T VQE ++   L++KD++V +QTGSGKT +FG+ +   +L E
Sbjct: 7   NLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCEKVLLE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +      P  L + PTRELAVQ+  ++  +     +      G   V  ++  L+   
Sbjct: 67  NKK------PQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR  DHI    + +S ++ +++DEAD+ML++GF D +E ++   PK R  ++F
Sbjct: 121 HIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDRVTMLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGA 244
           SAT+   I  L   Y  +  ++ I+ +N   +DI  +      SDR  +++N + Y    
Sbjct: 181 SATLEEKIEKLCVKYMNNPEKIEISKKNIT-TDIIEQEYYEVESDRKFSLLNKIIYTERP 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC+T+A V      +    F   AL G + Q++R   +Q  + GR    +ATDVA
Sbjct: 240 DSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+ E+ S  E+ +HR GRTGRAG KG S+ ++ +   RR + +     
Sbjct: 300 ARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSIEEYIG 359

Query: 365 VSVVWEPAPSVEAIRE 380
            SV  +  PS E ++E
Sbjct: 360 YSVPKKEIPSEEEVQE 375


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 140/380 (36%), Positives = 212/380 (55%), Gaps = 15/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L E GY   + +Q A +   L   DVL  AQTG+GKT AF L + S +  +
Sbjct: 13  NLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSRIDIK 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                  + P AL +APTRELA+QV    +  YA    G  V    GG S   +   L+ 
Sbjct: 73  Q------TTPQALVLAPTRELAIQVAEAFQR-YASHIPGFHVLPIYGGQSYGAQLSALRR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E IL  +P+ R+  
Sbjct: 126 GVHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  +A  Y +D   + +A++     +I  R  LV+   +  A+  IL    
Sbjct: 186 LFSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRILEAET 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+         L    F   A++G++ QQ+R   +Q ++DG+  + +ATDV
Sbjct: 246 FDGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360
           AARG+D+  +  VI+ ++  +PE+  HR GRTGRAGR G ++ F+ P  +N+ +  ER  
Sbjct: 306 AARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERAT 365

Query: 361 REANVSVVWEPAPSVEAIRE 380
           R+  ++V+    PSVE + +
Sbjct: 366 RQP-IAVL--DLPSVEVVND 382


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 207/376 (55%), Gaps = 11/376 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ERG    + +Q   L   L  KD++  A+TG+GKT+AF L +   L A + R S    
Sbjct: 15  LAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQNLTAPDGRGSRERG 74

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P A+ IAPTRELA QV  E    ++K+G  +      GG +   +   L+ G  +VVG
Sbjct: 75  RLPRAIVIAPTRELAKQVAEE----FSKSGPQLSTVTVYGGAAYGPQENALRRGVDVVVG 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    L++S ++  VLDEADEML +GF D IE IL  +P  R+ ++FSAT++
Sbjct: 131 TPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFSATLN 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  LA+ Y ++ V V++  E +  +   +++  V V  + R   + ++L  +  + AI
Sbjct: 191 DEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRT-RTRVLADLLTVYNPEKAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+         L     +  AL G+L+Q +R  AL   R GR  V +ATDVAARG+
Sbjct: 250 VFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGVLVATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +      R    L     V   
Sbjct: 310 DIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELRNLEYRTGVQFK 369

Query: 369 WEPAPSVEAIRERDAQ 384
             P P+ + ++   A+
Sbjct: 370 ERPLPTPKEVQAASAR 385


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 238/443 (53%), Gaps = 18/443 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPLIEKIDPK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELA+QV  EL  L     V +    GG  + R+ R L+N  
Sbjct: 68  NPNIQ------ALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKNKP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P  R+ L+F
Sbjct: 122 QIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ + KD   V I ++     +I+   V     ++ +A+  +L     +
Sbjct: 182 SATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+  V   ++ L    F    + G+LSQ +R + L+  ++G+  + IATDVAA
Sbjct: 242 LAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V FV P+ M     R+  E  
Sbjct: 302 RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYL--RIVEETT 359

Query: 365 VS--VVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                   P  S EA+   + DA + L + L  ++  G  +++   LL  +D   + A  
Sbjct: 360 KKRMTPLRPPSSEEALVGLQEDAMQSLVE-LVQNNDLGTYRELAAKLLENNDALDLVAAA 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
           L+     +    + TPVSL   R
Sbjct: 419 LK----SITKEPDATPVSLSEER 437


>gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
          Length = 557

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 172/552 (31%), Positives = 286/552 (51%), Gaps = 33/552 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---K 464
            +AA  LR    G    L A E    + P +   G    R   R  +     R      +
Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAE 478

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 479 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 538

Query: 525 VKLDK--GIQLK 534
           +K  +  G QLK
Sbjct: 539 LKDTRVAGKQLK 550


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
 gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
          Length = 655

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 179/570 (31%), Positives = 277/570 (48%), Gaps = 55/570 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L A         
Sbjct: 21  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++    TGV V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   V I S      DI           ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371
           + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++    
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ E + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 374 LPNAELLGERRLAKFAAKVQQ------QLESSDLDMYRALLAKLQPEEELEMETLAAALL 427

Query: 422 RI---HRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGS----- 459
           ++    R  +  P+   PV     R  F D              D+R     GG+     
Sbjct: 428 KMAQGERPLILPPD---PVFKPRQRREFNDRDDRGSDRGNDRRRDARPDSRDGGAERPRR 484

Query: 460 -RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----S 514
            R +      + + VG     E R ++  +     I+ + IG I++    + +E+     
Sbjct: 485 ERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGMP 544

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
            + +    RT  L+K + ++ LG  +P  R
Sbjct: 545 GEILSHFTRTRILNKPMNMQLLGDAQPHER 574


>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 477

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 155/462 (33%), Positives = 248/462 (53%), Gaps = 23/462 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ALS++G+   + +Q+ ++   L+E+  L+  AQTG+GKT AFG+ +  T+ A+       
Sbjct: 16  ALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIPILETIEADK------ 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA QV  E+  L  +  + V    GG S+  + + L++G  IVVGTP
Sbjct: 70  -TVRALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIKKLKSGVDIVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +R K L +  L   VLDEADEML++GF +DIE IL+ +  +++ML FSATI  A
Sbjct: 129 GRVMDLMRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLFFSATIPKA 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK +  +   + +A +    +  +     V   D+  A+  +L Y      IVFC 
Sbjct: 189 IMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQDFYGIVFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T++ V   T  L    +    + G+++Q  R  AL + +     + +ATDVAARGID+ +
Sbjct: 249 TKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTILVATDVAARGIDVSN 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           L  VI+  +    E+ +HR GRTGRAG+KG+++ FV P+   + A+ + R     +  E 
Sbjct: 309 LTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLAQ-IKRITKTEIKREH 367

Query: 372 APSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            P+VE I E   + +L   D + +++      ++   L+   D +++ A  LR       
Sbjct: 368 IPNVEEILEAKKEALLAYVDEIIMENDFDAYSELAQRLMDGRDAKQVLASVLRHVYEDEF 427

Query: 430 APE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGS 466
            PE   EIT V +     +  D +R F +  GS+D   +KG+
Sbjct: 428 LPENYNEITDVKV-----KIDDKTRLF-IALGSKDGSLYKGN 463


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 232/422 (54%), Gaps = 16/422 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D       P  L +APTRELA+QV    E       GV V    GG     + R L+ G+
Sbjct: 69  D--PTQHHPQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLRALKQGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + KD   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               V     P+ E + E+  ++    +   L    ++   + + D+  A  D E++AA 
Sbjct: 367 PIDEVAI---PNHEILMEKRREKFKARVSAQLEHHDLEKYRELLEDLFTADQDHEELAAA 423

Query: 420 FL 421
            +
Sbjct: 424 MM 425


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 147/423 (34%), Positives = 225/423 (53%), Gaps = 13/423 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +   N           L
Sbjct: 25  GFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKIDVNNRNVQ------GL 78

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+Q   EL  L     + V V  GG  + R+ R L++  HIVVGTPGRL DH
Sbjct: 79  VIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDAPHIVVGTPGRLLDH 138

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + H++ +VLDEADEML++GF DDIE I+   P +R+ L+FSAT+ PAI  +  
Sbjct: 139 IKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLLFSATMPPAIKRIGV 198

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  +   V I +     S I+   V     ++ + +  +      +  I+F  T+  V 
Sbjct: 199 RFMSNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPELTIIFGRTKRRVD 258

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    ++   + G+LSQQ+R + L+  + G+  + +ATDVAARG+D+  +  V +
Sbjct: 259 ELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVATDVAARGLDISGVTHVYN 318

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPSV 375
            ++  +PE+ +HR GRTGRAG++G+SV F+ P  M   R  E L ++    +   P  + 
Sbjct: 319 YDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKKTMTPL--RPPTNA 376

Query: 376 EAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRAGLCAPEE 433
           EA   +    I +    +D+   D  +K    LL  +  E +AA FL+ + +     P +
Sbjct: 377 EAFEGQIKASIDEVGSIIDANGLDRYEKAAAQLLETYTAEDLAAAFLKSVTKDADEVPVK 436

Query: 434 ITP 436
           ITP
Sbjct: 437 ITP 439


>gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 587

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 139/341 (40%), Positives = 201/341 (58%), Gaps = 20/341 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+S  G+     VQ A++ P L E   D++  AQTG+GKT A+GL L   L  + D   
Sbjct: 14  DAVSALGFTEAMPVQAAVI-PYLLEDNIDLIALAQTGTGKTAAYGLPLLEKLRPQRD--- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P AL ++PTREL +Q+  +LE  +AK    V V    GG S+  + R L+ G  IV
Sbjct: 70  ---FPQALVLSPTRELCLQIASDLES-FAKFLPEVHVLAVYGGSSIETQIRSLKRGVDIV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +R + +++  +  VVLDEADEML++GF +D++ IL   P++R +L+FSAT
Sbjct: 126 VATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPEERNLLLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  I T+A +Y  D   + I  +N  +S+I +   LV    R  A+  I+ +  +   I
Sbjct: 186 MSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPARQRYLALKRIVDFFPSIYGI 245

Query: 249 VFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           VFC TR      TK +AEHL    +   AL G+LSQ++R   +Q    G  ++ +ATDVA
Sbjct: 246 VFCRTRVE----TKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQLLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ +L  VIH  L  + EN  HRSGRT RAG+ G+S+
Sbjct: 302 ARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSI 342


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 151/513 (29%), Positives = 263/513 (51%), Gaps = 24/513 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  A+ + G+   + +Q   +   L   DV+  AQTG+GKT A+ + +   +  +
Sbjct: 7   NIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPMLQKINPD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                    P A+ + PTRELAVQV  E+  L AK  + + V    GG  + R+ + L+ 
Sbjct: 67  ------VKKPQAIVLCPTRELAVQVAEEIRKL-AKYMSDIKVLPVYGGQEIVRQIKSLKA 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ DH+R K +    +  V+LDEADEMLD+GFR+D+E IL  +P++R+ +
Sbjct: 120 GVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQTV 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +A+ +QKDA  + +  +    S+ID     V   ++   +  ++  + 
Sbjct: 180 LFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPKNKTEILSRLIDIYN 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K ++VFC+T+  V      L    +    + G++ QQ+R   +   R G+  + IATDV
Sbjct: 240 PKLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEILIATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +++V + +L  + E  +HR GRTGRAG+ G+++  I      + + + R  
Sbjct: 300 AARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKDIERYC 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-MVDVLLAKHDPEKIAAGFLR 422
              ++ +P PS++ ++      I       + I+ DE + M+D++    + E   +  + 
Sbjct: 360 KTKILAKPIPSLDDVKNTKMDGIFDK--IKEMIEADEHRAMLDMVEEHVNQEDYTSMDMA 417

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                +   + +  +  V   + F  D  A        D  +    F ++VG K K    
Sbjct: 418 AALLKMIVGDTLDRIDEV---ENFHFDENA--------DTSRMVRLF-INVGKKDKITPA 465

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            ++  +   SG+  + +GAI +  + TFV+V A
Sbjct: 466 NILGAIAGESGMPGRLVGAIDMMDNYTFVDVPA 498


>gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 657

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 176/568 (30%), Positives = 279/568 (49%), Gaps = 50/568 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   +        P+ 
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPSL 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELA+QV   L        GV V    GG     + R L+ G  +VVGT
Sbjct: 74  KAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+  
Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + + + K+   V I S      DI     +V    +++A+V  L       AI+F 
Sbjct: 194 AIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRFLEAEDFDAAIIFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D+ 
Sbjct: 254 RTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIATDVAARGLDVE 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  + +  +R  + + R   +++    
Sbjct: 314 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIERTMKMTIPPVQ 373

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ E + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 374 LPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 427

Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD----- 461
           ++    R  +  PE    P    + RD       R R+DS    R+    GG R      
Sbjct: 428 KMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGERPARRER 487

Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      +
Sbjct: 488 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 547

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
            +    RT  L+K + ++ LG  +P  R
Sbjct: 548 MLSHFTRTRILNKPLNMQLLGDAQPHER 575


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 222/403 (55%), Gaps = 19/403 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   PQ + +A+ E G+   + VQ+  +   L  +D++  A TG+GKT AFGL +   L 
Sbjct: 6   FNFKPQ-LAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVLQQL- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 S   +  AL I PTRELA QV  E+        +  A   GG S  R+ + +Q+
Sbjct: 64  ------SCDGSVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQHVQS 117

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            A +VV TPGRL D ++   +++S  + V+LDEADEMLD+GF DDI+ I    P+ R+ L
Sbjct: 118 -ASVVVATPGRLIDLLQSGKISLSP-RFVILDEADEMLDMGFLDDIKEIFTHLPESRQTL 175

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  I TLA+   KD   V+I   N  +  I     +V   +RD+A+V +L Y  
Sbjct: 176 LFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLLDYKN 235

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+FC  +  V R    LA   +    L G++ Q++R   ++  ++G+A + IATDV
Sbjct: 236 PDKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILIATDV 295

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V +  L  +PE+ +HR GRTGRAGR+G ++ ++  +  R  +R+ +  
Sbjct: 296 AARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRIQKSV 355

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
             S+     P +E +R   AQR   D L    IQ  EK+ VD 
Sbjct: 356 GSSIESRIIPRIEEVR---AQR--SDAL----IQRIEKQEVDT 389


>gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica]
 gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703]
          Length = 657

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 176/568 (30%), Positives = 279/568 (49%), Gaps = 50/568 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   +        P+ 
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPSL 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELA+QV   L        GV V    GG     + R L+ G  +VVGT
Sbjct: 74  KAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+  
Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + + + K+   V I S      DI     +V    +++A+V  L       AI+F 
Sbjct: 194 AIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRFLEAEDFDAAIIFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D+ 
Sbjct: 254 RTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDILIATDVAARGLDVE 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  + +  +R  + + R   +++    
Sbjct: 314 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQNIERTMKMTIPPVQ 373

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ E + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 374 LPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEGFDIETLAAALL 427

Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD----- 461
           ++    R  +  PE    P    + RD       R R+DS    R+    GG R      
Sbjct: 428 KMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGERPARRER 487

Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      +
Sbjct: 488 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 547

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
            +    RT  L+K + ++ LG  +P  R
Sbjct: 548 MLSHFTRTRILNKPLNMQLLGDAQPHER 575


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/340 (39%), Positives = 191/340 (56%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +AL+E GYV  T +Q   +   L   D++  AQTG+GKT AF L +   LL   +   
Sbjct: 15  ILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQKLLPHASAST 74

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELAVQV   ++     T +   V  GGV +  +   L+ G  I+
Sbjct: 75  SPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQTPHLKTGVEIL 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF   ++ IL   P++R+ LMFSAT
Sbjct: 135 VATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLPRQRQSLMFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  L++++      + +A  N    +I  +  LV  S +   +  +LR   AK  I
Sbjct: 195 FSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQSGKHQLLAQLLRGDDAKQVI 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+ + SR  K L        A+ G+ SQ ER  AL   + GR  V IATDVAARG+
Sbjct: 255 VFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGRVAVLIATDVAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L +VI+ E+    E+ +HR GRTGRAG  G ++ ++
Sbjct: 315 DIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLV 354


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 222/393 (56%), Gaps = 17/393 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ GY   +++Q A +   +  +DVL  AQTG+GKT AF L + + L A + +    
Sbjct: 21  KALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILAQLQASSKK---- 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P  L +APTRELA+QV    +    Y K   VV +  GG     + R LQ G  +VVG
Sbjct: 77  --PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIY-GGADYRGQLRQLQRGVQVVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+IL+ +P  R++ +FSAT+ 
Sbjct: 134 TPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQIALFSATMP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  +AK +  + V V I  +   +  I  R  ++A   + +A+  IL        IVF
Sbjct: 194 TAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVHKLDALTRILEVEDFDGVIVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR + +   + LA   +   AL+G++ Q++R   +  ++ G   + +ATDVAARG+D+
Sbjct: 254 VRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ ++  + E  +HR GRTGRAGR+G ++     N +RR  R   +A  ++   
Sbjct: 314 ERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAIL-FAANRERRLLRAIEKATGTIEKM 372

Query: 371 PAPSVEAIRERD----AQRILQDPLFLDSIQGD 399
             PSVE + ++      QRI +    LD+++ D
Sbjct: 373 ELPSVEQVTDKRIGKFKQRITE---TLDTVELD 402


>gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
 gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
          Length = 609

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 212/383 (55%), Gaps = 10/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +++ + GYV  + +Q   +   L  KDVL  AQTG+GKT AF L L + + A 
Sbjct: 11  NLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLLNNIDAT 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                    P  L +APTRELA+QV    E  YA+   G+ V    GG S + +   L+N
Sbjct: 71  ------VKHPQVLVLAPTRELAIQVAEAFEQ-YAQFIKGINVLALYGGQSYNVQLSGLRN 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++V TPGRL DH+    +   HLKA+VLDEADEML +GF +D+E I+  +PK+++  
Sbjct: 124 GPQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTC 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +   Y +DA  V+I++ N     ++ +    A + ++NAI+  L+   
Sbjct: 184 LFSATMPQQIQKICSTYLEDAEHVHISARNSTVESVE-QVYWQANTHKNNAIIRFLQAET 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF  TR       ++L +  F    L+G+++QQ R   ++ +++G   + IATDV
Sbjct: 243 YDGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +     + +  
Sbjct: 303 AARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERHLLRNIIQHT 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
             ++     PS   + E+  Q++
Sbjct: 363 KSTINNVDMPSTALVEEKRIQQL 385


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 265/525 (50%), Gaps = 26/525 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  AL E GY   + +QE  +   L  KDV+  AQTG+GKT AF L   S +    D
Sbjct: 113 PRVLS-ALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMAELAD 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +     L +APTRELA+QV      +        V    GG     +   L+ GA 
Sbjct: 172 INGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGAQ 231

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +FS
Sbjct: 232 VVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALFS 291

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  +A+ Y  D   V + ++    ++I  R + V  S + +A+  +L       
Sbjct: 292 ATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYDG 351

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+         L    FQ  A++G++ QQ R   +  +RDGR  + +ATDVAAR
Sbjct: 352 IIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAAR 411

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363
           G+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P+   M R+ E+  R+ 
Sbjct: 412 GLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQK 471

Query: 364 NVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EK 415
                 EP   P+ + +     QR  +     ++I+ ++    +K+++    +HD   E 
Sbjct: 472 -----VEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAED 524

Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           IAA    I + G    L   ++I   S     D      R  K G    D  +G   + L
Sbjct: 525 IAAALAVIAQQGRAFFLDENDDIARKSRAFADDTKDCGKRGPKKGRNHSD--EGMVNYKL 582

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +VG   + +A  ++  L    GI    IG+I ++   T V +  D
Sbjct: 583 NVGRASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPED 627


>gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 620

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 206/342 (60%), Gaps = 18/342 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+ + G+ N T +QE  + P L E   D +  AQTG+GKT AFGL L   +  ++++   
Sbjct: 17  AVKDLGFENPTPIQEQSI-PVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFKSNK--- 72

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P AL + PTREL +Q+  +++     T G  V    GG ++ ++ R+++NG  IVV 
Sbjct: 73  ---PQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIRNGVQIVVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  K ++ +++K VVLDEADEML++GF++DI  IL ++P  ++  +FSAT+ 
Sbjct: 130 TPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWLFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  +AKNY    V + + ++N  + +I++    V   D+  A+  I+ ++     +VF
Sbjct: 190 PEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRARDKYAALKRIVDFNPEIFGVVF 249

Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           C T+      T+ +AEHL    +   AL G+LSQQ+R   +Q  RD   ++ IATDVAAR
Sbjct: 250 CKTKMD----TQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ ++  VI+  L    E+  HRSGRTGRAG+ G+S+ ++
Sbjct: 306 GIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIV 347


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 259/517 (50%), Gaps = 25/517 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL + G+   + +Q+  +   L   D++  AQTG+GKT AFG+ +  ++  +
Sbjct: 13  NLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPIIQSIDEK 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL ++PTREL +QV  E+  +     V V    GG  + R+ R L++G 
Sbjct: 73  NRHVQ------ALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQIRSLKHGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGRL DH+R   +++ H+  +VLDEADEMLD+GF +DIE I+   P +R+ ++F
Sbjct: 127 QVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPPERQTMLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +++K Y +    V I  E      ID         D+ + +  IL      
Sbjct: 187 SATMPRPILSISKKYMRTPKVVAIHKEIVTAPTID--QYYYETRDKVDGLCRILDTTDDC 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V      LA   ++   L G+LSQ +R   ++  R  +  + +ATDVAA
Sbjct: 245 KMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ ++  V++ ++  +PE+ +HR GRTGRAG  G+++ F+ P+   R+ + + R   
Sbjct: 305 RGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREF-RQLKLIERSVK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             ++    P+   + E+  ++I+     +   +   D   + + L   +D   IAA  ++
Sbjct: 364 TKIIRGQLPTDANVLEKQREQIISKMQSILEQNQYHDYLPIAEALENDYDIHDIAAAAIK 423

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
             + G  A EE           +  D         G+R    G     +++G   K   R
Sbjct: 424 FMQEGNKALEE----------PQTADALPEALANTGAR---PGMVRLFINIGRSAKVTVR 470

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            ++  +   + I  +SIG I +    +FVEV AD  +
Sbjct: 471 DIIQSIAIEAEIPAKSIGRISIYDKFSFVEVPADSAE 507


>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 460

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 12/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +  F+    
Sbjct: 19  LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  +A+   ++ +C GG  + ++   L +  HIVVGTP
Sbjct: 75  --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    
Sbjct: 132 GRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+   R  IA + ++ S I+ R        R   +++IL +H   + +VFC+
Sbjct: 192 IEQISARVQRQPQRFEIADDVKE-SAIEQRFYETTKEQRLPLLISILGHHQPSSCVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ +
Sbjct: 251 TKRDCQSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRTGRAG +G++V    PQ M  RA  +     + + W  
Sbjct: 311 LELVVNFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQEMN-RANLIEDYLGMRIKWAA 369

Query: 372 APSVE 376
           A S++
Sbjct: 370 ADSLD 374


>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 486

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 198/347 (57%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL   +   
Sbjct: 22  ILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPHASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +   L+ G  I+
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQSDQLRRGVEIL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLIRERNLKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 322 DIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQ 368


>gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 517

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 210/382 (54%), Gaps = 11/382 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +P  I  AL + G+  LT VQ   L   L  +D++V A+TGSGKT AF L L   L  
Sbjct: 38  DELPPSILNALDKTGWDKLTPVQSKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLLEKL-D 96

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N  ++      AL + PTRELA QV RE E ++  +G+ V    GGV    +R +L+ G
Sbjct: 97  PNINYT-----QALILVPTRELARQVEREAEKIFEGSGLRVLSVYGGVGYGHQREELEKG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RML 183
           AH+VVGTPGR+ DH+  +  ++  L+ ++ DEAD ML +GF  D+  +    P++     
Sbjct: 152 AHMVVGTPGRILDHLLKRTFDLEDLETLIFDEADRMLSIGFYPDMREVKSYLPRRPISTY 211

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  L+K +      ++++S+    ++ID+    V    ++  ++ IL    
Sbjct: 212 MFSATFPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEVPSMGKERQLMRILEMEN 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AI+FC+T+A+V   T VL    F    L+ +LSQ +R   L  +RDG  R  +ATD+
Sbjct: 272 PTSAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDI 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+PDL  VI  E   + E+ +HR+GRTGRAG  G+++ ++    +   +R+    
Sbjct: 332 AARGIDVPDLSHVIMYEPPEDKESYIHRAGRTGRAGSSGVAISLVDVIQKIELQRIATAY 391

Query: 364 NVSVVWEPAPS----VEAIRER 381
           N++      P     +E I ER
Sbjct: 392 NINFEIRELPDDKQVLETINER 413


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 217/386 (56%), Gaps = 9/386 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  +++ +A+ E G+   + +QE  +   L  +D++  A TG+GKT AFGL + + + A+
Sbjct: 7   NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKIKAK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S   A+ I PTRELA+QV  EL       G+  A   GG +  R+ + ++N +
Sbjct: 67  -------SGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D +RG  ++I   K V+LDEADEMLD+GF DDI+ I    P+ R+ L+F
Sbjct: 120 -VIVATPGRFLDLLRGDKISIKP-KFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK   K+   V +   +  +S I     +V   +RD+A++ +  +   K
Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC T+  V R +  L    F   AL G++ Q++R  A++  +  +  + IATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  + E+ +HR GRTGRAG++GM++ ++  +  R  +++ +    
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL 391
            +  +  P++  ++++    + Q  L
Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVL 383


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/511 (30%), Positives = 264/511 (51%), Gaps = 34/511 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I +A+   G+   T +Q A+  P ++  +DV   AQTG+GKT AFG+ +   + A     
Sbjct: 16  IAKAIENMGFEEPTPIQ-ALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVIENIDASQRVV 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   + + PTRELA+Q+  E   L A    + V    GG  + R+ + L NG HIV
Sbjct: 75  Q------VIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKALANGVHIV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH++ + L++ H+  VVLDEAD+MLD+GFRDDIE IL   P+KR+ L+FSAT
Sbjct: 129 IGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  ++K +Q     V +  +      I+   + V   D+ +++  ++     + AI
Sbjct: 189 LPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCRVIDVVDPQLAI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+T+         +    ++   L G++ Q +R   +   R G   + IATDVAARGI
Sbjct: 249 IFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDILIATDVAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+ D+++VI+ ++  + +  +HR GRTGRAG+ G ++ FV  ++  +  E + +   V +
Sbjct: 309 DVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLRE-IQKYIKVQI 367

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPE----KIAAGFLR 422
             +P P+ + + E+  + IL++    ++IQ G  +    ++  + + +    +IAA  L+
Sbjct: 368 PRKPLPTADDVVEQKTKTILEE--VRETIQKGGTEPYARIVEQESEGDLTTLEIAAALLK 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           I               L  G D   + +     G    ++  G   F L +G   K   +
Sbjct: 426 IR--------------LEQGSDSHTEHAVPKDFGDTGAES--GMVRFFLGIGRDHKVAPK 469

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            ++  +   +GI  + IGAIR+    +FVEV
Sbjct: 470 DIVGAIAGETGIPGKYIGAIRILDTYSFVEV 500


>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 603

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 265/527 (50%), Gaps = 44/527 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+SE G+   + +QE  +   L   D  V  AQTG+GKT AFGL L   L      FS  
Sbjct: 16  AISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQL-----DFS-Q 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P AL + PTREL +Q+ ++LE    Y     VVAV  GG ++  + R ++ G  IVV 
Sbjct: 70  KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAV-YGGANISDQLRQIRRGVQIVVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I    ++ S++K VVLDEADEML++GF++DI  IL  +P++++  +FSAT+ 
Sbjct: 129 TPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A+NY  D V + + ++N  +++I++   L+   D+  A   I+  +     IVF
Sbjct: 189 REVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFGIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+       + L +  +   +L G+LSQQ+R   ++  RD   ++ IATDVAARGID+
Sbjct: 249 CRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF---------------VIPQNMQRR 355
            D+  VI+  L    EN  HRSGRT RAG+ G+S+                +I +  +R+
Sbjct: 309 NDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPFERK 368

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                 E     ++     +E +   D Q     P  +++++          L+K D   
Sbjct: 369 QVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPTIMENLEA---------LSKED--- 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR---FRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           I   F  +         +  P   +  RD     R D R  +  GGS    KG +   ++
Sbjct: 417 IIKRFASLEFNRFLDYYKNAPDLNIEARDNERGERGDRREDRSRGGS----KGYTRLFMN 472

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +GS  +     ++  +C ++ I+ +SIG I ++   TF EV  + V+
Sbjct: 473 LGSVDEFTRGDMLGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVE 519


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 217/386 (56%), Gaps = 9/386 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  +++ +A+ E G+   + +QE  +   L  +D++  A TG+GKT AFGL + + + A+
Sbjct: 7   NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKIKAK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S   A+ I PTRELA+QV  EL       G+  A   GG +  R+ + ++N +
Sbjct: 67  -------SGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D +RG  ++I   K V+LDEADEMLD+GF DDI+ I    P+ R+ L+F
Sbjct: 120 -VIVATPGRFLDLLRGDKISIKP-KFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK   K+   V +   +  +S I     +V   +RD+A++ +  +   K
Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC T+  V R +  L    F   AL G++ Q++R  A++  +  +  + IATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  + E+ +HR GRTGRAG++GM++ ++  +  R  +++ +    
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL 391
            +  +  P++  ++++    + Q  L
Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVL 383


>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383]
 gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
          Length = 527

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/347 (37%), Positives = 203/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 44  ILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  ++
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 224 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/517 (30%), Positives = 259/517 (50%), Gaps = 27/517 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L  +D+L  A TG+GKT AF L +   + A        + P+AL
Sbjct: 40  GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQRMPANRS----TTNPVAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV         + G  V    GG  + R+ R L  G  +VV TPGR  DH
Sbjct: 96  VLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAGVDVVVATPGRALDH 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  +  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I  +A+
Sbjct: 156 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 215

Query: 199 NYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+ IA E     +   +   A LV+ + +  A+  +L       AIVFC +R 
Sbjct: 216 AHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDVESPTAAIVFCRSRE 275

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+  L  
Sbjct: 276 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLSH 335

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +  P+V
Sbjct: 336 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 395

Query: 376 EAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
             +R R     Q  L++ L  D ++   + +V+ L  + D  ++A   +R+      A E
Sbjct: 396 ADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDLMEVALAAVRL------AHE 448

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------GSSWFSLSVGSKQKAEAR 482
              P +L    +      R  + G    +             G++   + +G +     +
Sbjct: 449 ATLPGALEEEEEIPEIAVRPPRAGRPGHEGRGERRPGRPRSAGTTQVFVGLGRRAGVRPQ 508

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            L+  +   +G+N + IG+I +    + VEV A   D
Sbjct: 509 DLVGAITGETGMNGRDIGSIEIADRFSLVEVPAGMAD 545


>gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 625

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 166/533 (31%), Positives = 267/533 (50%), Gaps = 27/533 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+ +   VQE ++   L  K DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116
           L   + A++       A  A+ ++PTREL VQ+  +L ++     G+ +    GG  +  
Sbjct: 61  LLQKVNAQD------RATQAIVLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  ++V TPGRL D I    + +  +  +VLDEADEML++GF D I  I +  
Sbjct: 115 QIRAIKHGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+A        L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVL----- 407
            ++ ++     +    P  E I ++   +++ D +  D    DE +    M D++     
Sbjct: 355 RQIEKQIGKDFIDGELPKSEEICKKQLFKVMDDIMKTDV---DEDQIAPYMADIMRQFEY 411

Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-- 463
           + K D  K  +   F R       APE   PV+    R    + +   KV  G R +   
Sbjct: 412 VDKEDIIKKMVTVTFGRFLDYYQHAPEIEKPVAGKGSRSERGERNTRGKVSNGQRQHVAE 471

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +G     +++G         +M  L +     RQ +G I +    +++EV  D
Sbjct: 472 EGFRRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEVPED 523


>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 520

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 44  ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 103

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 104 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 163

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 164 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 223

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 224 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 283

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 284 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 343

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 344 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 390


>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
 gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
          Length = 790

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 219/382 (57%), Gaps = 12/382 (3%)

Query: 5   ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +N P   +   AL +RG   L  +Q ++L P L+ +DV+  A+TG+GKT+ F L +  +L
Sbjct: 136 DNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGFSLPIIESL 195

Query: 63  LAE-NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L+  ++R   +  P  + +APTRELA QV +E++   A    +  +C+ GGV++  + R 
Sbjct: 196 LSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQ---ATVPSLRTLCVYGGVAISNQERP 252

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGRL D I+   LN+  ++  VLDEAD+ML +GF +D+E I++  P++R
Sbjct: 253 LRRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEEIPEQR 312

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +  +FSAT+   +T + + Y  D V +++  + E +    ID  +   + + R   + ++
Sbjct: 313 QTFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTTILADL 372

Query: 239 LRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  +G    AI F  T+      T  L   +   V L G+++Q +R   L+  RDGR  V
Sbjct: 373 VTVYGKGAKAICFTQTKREADEVTAALGRRMATEV-LHGDIAQAQRERTLKRFRDGRFSV 431

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++LV+H EL  + E+ +HR GRTGRA +KG ++ +     + R  
Sbjct: 432 LVATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMYTPREKSRIR 491

Query: 358 RLFREANVSV-VWEPAPSVEAI 378
            + RE  V   V  P  + E +
Sbjct: 492 SIVRETGVKFRVINPPTAAEVM 513


>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 521

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 202/347 (58%), Gaps = 2/347 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + N   
Sbjct: 45  ILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQANTSA 104

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I+
Sbjct: 105 SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQSAELRRGVEIL 164

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 165 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 224

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  I
Sbjct: 225 FSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVI 284

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + L        A+ G+ +Q ER  AL   + G     +ATDVAARG+
Sbjct: 285 VFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEALVATDVAARGL 344

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 345 DIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 391


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 169/528 (32%), Positives = 277/528 (52%), Gaps = 42/528 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   +++Q A +   L+ +DV+  AQTG+GKT AF L + S +   +      
Sbjct: 32  KALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVLSQMETGHKN---- 87

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    E   A   GV V    GG    ++   L+ G  ++VGT
Sbjct: 88  --PQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLSALRRGVDVIVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P  +++ +FSAT+  
Sbjct: 146 PGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPSTKQVALFSATMPA 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++  Y  D   + + ++    ++I  R ++V+   + +A+  IL     +  IVF 
Sbjct: 206 QIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRILEVENFEGMIVFT 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   A++G+++Q +R   +  ++ G+  + +ATDVAARG+D+ 
Sbjct: 266 RTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILVATDVAARGLDVE 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V++ +L  + E+ +HR GRTGRAGR G ++ FV P+  +RR      +A    + E
Sbjct: 326 RISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPR--ERRMLTAIEKATRQPLTE 383

Query: 371 PA-PSVEAIRERDAQRILQDPLFLDSIQ---------GDEKKMVDVLLAKHD-PEKIAAG 419
            + PSV+ +   +A R+ +   F D+I             + +V   ++ HD PE   A 
Sbjct: 384 MSLPSVDDV---NATRLTR---FDDAITTALEDTAAIATFRDVVAHYVSHHDVPEADVAA 437

Query: 420 FLRIHRAG----LCAPEEITPVSLVSGR-DRFRDDSRAFKVGGGSRDNF---KGSSWFS- 470
            L +   G    L   E +      + R DR   DSR     GGSRD+    + S  F+ 
Sbjct: 438 ALAVVAQGDTPLLLEEETLRQQRFDNDRPDRSSRDSR----DGGSRDSGPRRESSGRFAT 493

Query: 471 --LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             ++VG +Q+ E R ++  L    G+ R   GAI+++ D + VE+ AD
Sbjct: 494 YRIAVGRRQRVEPRQIVGALANEGGLRRNDFGAIQIRQDFSLVELPAD 541


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + KD   V IA++      +D   + V   ++ + + +++     + AIVF  T+  V 
Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 204/360 (56%), Gaps = 12/360 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L+ +DV   A+TGSGKT AFG+ L   +           A
Sbjct: 19  LNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ------VA 72

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGTP
Sbjct: 73  AQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGPQLDSLVHAPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+FSAT    
Sbjct: 132 GRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSATYPSG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + V +   + Q S I+ R        R   +V+ +R++   + +VFC+
Sbjct: 192 IERISARVQRDPLNVEVDDGDDQTS-IEQRFYETTRDQRPAVLVSAIRHYQPSSCVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +
Sbjct: 251 TKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRTGRAG  G+++    PQ M+ RA  +      +V W P
Sbjct: 311 LELVVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEME-RAHAIEEYQRKAVNWAP 369


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/515 (31%), Positives = 259/515 (50%), Gaps = 20/515 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L     LL          
Sbjct: 40  ALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFAL----PLLHRMPDGRAGG 95

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+AL + PTRELAVQV           G  V    GG  + R+ R L  G  +VV TPG
Sbjct: 96  EPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLGVDVVVATPG 155

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I
Sbjct: 156 RALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVLFSATMPSRI 215

Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+ +  D VR+ I  E +   +   +   A +VA + +  A+  +L       AIVF
Sbjct: 216 DGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDVESPTAAIVF 275

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+
Sbjct: 276 CRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDV 335

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +
Sbjct: 336 EQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTGQRIAID 395

Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI-HRA 426
             P+   +R R     Q  L++ L  D ++   + +V+ L  + D  ++A   +++ H A
Sbjct: 396 KIPTAADLRNRRLELTQAALRESLLEDDLE-PFRVIVESLSDEFDMMEVALAAVKLAHEA 454

Query: 427 GLCAP------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
              +P      EEI  V++   R+               R    G++   + +G +    
Sbjct: 455 --ASPGSDDDEEEIPQVAVRPPREARPGQEGRGGERRPGRPRSGGTTQVFIGLGRRAGVR 512

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            + L+  +   + ++ + IG+I +    + VEV A
Sbjct: 513 PQDLVGAITGETQVSGRDIGSIEIADRFSLVEVPA 547


>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 521

 Score =  229 bits (583), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 205/376 (54%), Gaps = 7/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 15  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           +          AL + PTREL +QV  +   L    G    V I GG  + R+ R L+  
Sbjct: 75  SKHLQ------ALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   +++  +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 129 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  + TL K +Q     +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 189 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R G   + +ATDVA
Sbjct: 249 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 309 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 368

Query: 365 VSVVWEPAPSVEAIRE 380
           + +     P+++ + E
Sbjct: 369 IKIEAGKIPTLDDLEE 384


>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 559

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R          
Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477

Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L
Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537

Query: 522 RRTVKLDK--GIQLK 534
              +K  +  G QLK
Sbjct: 538 LTKLKDTRVAGKQLK 552


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 9/365 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L     R     
Sbjct: 17  TLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVSRFRVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV  E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 74  ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D +P +R+ L+FSAT    
Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTLLFSATFPEQ 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251
           I T+A    ++   V + S   Q S I+ R   L    +RDNA+  +L  H  ++ +VFC
Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLENTEERDNALEALLLTHRPESTVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVAARG+D+ 
Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     + V    
Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369

Query: 372 APSVE 376
            P  E
Sbjct: 370 LPQPE 374


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 7/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 10  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLEVE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           +          AL + PTREL +QV  +   L    G    V + GG  + R+ + L+  
Sbjct: 70  SKHLQ------ALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   + ++ +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I TL K +QK    +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R+G   + +ATDVA
Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363

Query: 365 VSVVWEPAPSVEAIRE 380
           + +     P+++ + E
Sbjct: 364 IKIEAGKIPTLDDLEE 379


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 173/558 (31%), Positives = 285/558 (51%), Gaps = 40/558 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L  + +++ P  
Sbjct: 20  ALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKL--DLNQYKPQ- 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 77  ---AIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++      VLDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSSMEEIQL 373

Query: 368 -----VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
                V E   S  AI     +       F + +   EK  V + +   D   +AA  L+
Sbjct: 374 PHRDKVAEARLSQLAIELEAEKEHASLEKFAELV---EKLQVSLEI---DANTLAAILLK 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-----GSSW--FSLSVGS 475
             + G      +    ++   +R +   R  +  GG R + +      + W  + L VG 
Sbjct: 428 -RQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531
            Q  + + ++  L    G+ + SIGAI++    TFV++    SAD    LR+       I
Sbjct: 487 DQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL-----RI 541

Query: 532 QLKYLGGEKPDFRGYKSS 549
           + K +G    DF  ++ S
Sbjct: 542 RQKEVGAVVCDFDDFRES 559


>gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 570

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 22  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 77

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 78  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 133 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 193 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 429

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R          
Sbjct: 430 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 488

Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L
Sbjct: 489 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 548

Query: 522 RRTVKLDK--GIQLK 534
              +K  +  G QLK
Sbjct: 549 LTKLKDTRVAGKQLK 563


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/551 (31%), Positives = 278/551 (50%), Gaps = 38/551 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+++ GY + + +Q A +   L   DV+  AQTG+GKT AF + + S +  ++ 
Sbjct: 22  PAVL-KAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPILSKIDTDSR 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL +APTRELA+QV        A+  V V    GG S   +   L+ GA +
Sbjct: 81  NTQ------ALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAGLKRGAQV 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +++ +FSA
Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L        
Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLETEQGDAM 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +ATDVAARG
Sbjct: 255 IVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVATDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364
           +D+  +  V++ ++  +PE+ +HR GRTGRAGR G + +FV P  +++    ER+ R+  
Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372

Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414
             +V    PSV+ + E+   +        L  P   LF   ++G E+   DV +A     
Sbjct: 373 -KLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDH-DVPMA----- 425

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA      R G    EE         + R R + R        R+     + + ++VG
Sbjct: 426 DIAAALALQSRNG----EEFLMTEPPPEKRRERPE-RGDASPRKPRERRSDLATYRIAVG 480

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKG 530
            + K     ++  +    G++R   G I ++ D + VE+ A      +  L+ T    + 
Sbjct: 481 KRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGKTLKALQNTKIQGQL 540

Query: 531 IQLKYLGGEKP 541
           IQL+   G KP
Sbjct: 541 IQLQPDRGAKP 551


>gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 559

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/555 (30%), Positives = 286/555 (51%), Gaps = 37/555 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R          
Sbjct: 419 ALAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVP 477

Query: 463 -FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L
Sbjct: 478 LAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 537

Query: 522 RRTVKLDK--GIQLK 534
              +K  +  G QLK
Sbjct: 538 LTKLKDTRVAGKQLK 552


>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 530

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 264/523 (50%), Gaps = 56/523 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+  +GY   T +QE ++   L  K+ V+  AQTG+GKT AFG+ L   L  +      A
Sbjct: 16  AIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIPLIERLDEK------A 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA+QV  E++ L     + +    GGVS+  + R L+    +VVGTP
Sbjct: 70  NDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQIRALKRRVDLVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L+I+ +K +V+DEADEMLD+GF +D+E IL  + K++++LMFSAT+   
Sbjct: 130 GRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTNKEKQILMFSATMPQR 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-------YHGAK 245
           I TLA+ +  +   V    EN++   +     +  +    N I  + R       ++G  
Sbjct: 190 IVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIELLSRLIDIDTNFYG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +  ++  AL+G++SQ +R   +   +  R ++ I+TDVAA
Sbjct: 248 --LVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKRIKILISTDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR------RAER 358
           RGID+ +L+ VI+  L  NPEN +HR GRT RAG +G ++ FV P   +R       ++ 
Sbjct: 306 RGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYRRFMFIKHSSKA 365

Query: 359 LFREANVSVVWEPAPS-VEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--P 413
           +  EA +    +   + VE I++     + +  DP++        + + + +L + D  P
Sbjct: 366 IIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIY--------EILAETILEETDQEP 417

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +I A  L+    G+   E    +  V    + + D R F                 +++
Sbjct: 418 SQIIASILKYFYGGILKEENYNKIKEVKNSSKSK-DQRLF-----------------VAL 459

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           GS  K   + L   + R +G+  + I  I+V    +FV V ++
Sbjct: 460 GSSSKMTPKKLAEFIERETGVTIKKIKDIQVMEKFSFVTVPSE 502


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 221/398 (55%), Gaps = 14/398 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66
           PQ I +A++E+GY   T +Q   +   L   D++ +AQTG+GKT AF L +   +L   +
Sbjct: 40  PQ-IQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPIIQKILRHAS 98

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SPA  P+ AL + PTRELAVQV          T +  AV  GGV +  +   L+NG 
Sbjct: 99  NSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGV 158

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ T GRL DHI  K  N+S ++ +VLDEAD MLD+GF  D++ I+   P +R+ L+F
Sbjct: 159 EILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIPAQRQTLLF 218

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RY 241
           SAT SP I  LA++Y +  V V +A +N     +     +V+ +D+  AIV +L    R 
Sbjct: 219 SATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKVLEARARA 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             ++  I+F ++R   ++ ++ L     +  A+ G+  Q ER+  L   + G     +AT
Sbjct: 279 GLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKSGAIEALVAT 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+PD+  VI+ EL  N E+ +HR GRTGRAG KG ++ ++  + +R  + + +
Sbjct: 339 DVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSEKRLLDDIEK 398

Query: 362 EANVSVVWEPAPSVEAIRER-------DAQRILQDPLF 392
                +  +P P   +++ R        A   + DP F
Sbjct: 399 LMKRKLDVKPLPEGASLQSRPSSSGYGSAPAKMSDPFF 436


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/513 (31%), Positives = 255/513 (49%), Gaps = 32/513 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G+   T +Q+  +   L  KD++  AQTG+GKT AF + +   + +  +   
Sbjct: 23  IVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIPVLEKIDSRRNGVQ 82

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
                 AL I PTRELA+QV  E+  +     +      GG S+ R+ + L Q    IV+
Sbjct: 83  ------ALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQRVQIVI 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH+R   L +  +  VVLDEADEMLD+GF +DIE IL+ +P  R+  +FSATI
Sbjct: 137 GTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQTFLFSATI 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  L++ Y      + ++  N     I+        S + +A+  +L       AI+
Sbjct: 197 PEEILRLSRKYLNSPEFITVSRNNLTVPLIEQVYYETRESTKLDALARLLDALDISLAII 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V      L    +Q   L G+LSQ +R++ ++  + G+    +ATDVAARG+D
Sbjct: 257 FCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVATDVAARGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS-V 367
           + ++  VI+ ++  +PE  +HR GRTGRAG+ GM++  V P++   R  RL  +   S V
Sbjct: 317 IENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDF--RQLRLIEKITKSRV 374

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
             E  P +  + ER  + I    + +  DS     + +VD L+ ++DP  IAA  L++  
Sbjct: 375 KREHLPGLADLTERRKEMIKSQLIRVIEDSNLAYYRSVVDPLVDEYDPIDIAAAALKLG- 433

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRA--FKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                        L +G D  + +S    +  G G      G     +++G K       
Sbjct: 434 -----------YDLETGDDIEKTESSPAYYDTGAGP-----GMVRLFMTLGRKDNISPGE 477

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           L+ +L   +GI    +G +R+    TF EV  +
Sbjct: 478 LVRVLSEETGIPEHMVGDVRIYEKFTFTEVPEE 510


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 210/385 (54%), Gaps = 6/385 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M+  + I   +   L+ERG +  + +Q   L   ++ +D++  A+TG+GKT+AF + +  
Sbjct: 1   MQFTDLIAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVID 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R      P AL +APTRELA QV  E +   +   ++     GG +   + + 
Sbjct: 61  KLEPSRER---GRLPRALILAPTRELAKQVAEEFKK--SAPELLTLTVYGGAAYGPQEKA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++VGTPGR+ DHI    L +  ++  +LDEADEML +GF D IE IL ++P+ R
Sbjct: 116 LYGGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           + ++FSAT+   +T +   Y KD + V++  E+R  +    + + V +   R   + + L
Sbjct: 176 QTMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRVLADFL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + AIVF  T+  V      L     +  AL G+L+Q +R  AL   R GR RV +
Sbjct: 236 TIYNPERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +  +   R    L
Sbjct: 296 ATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
             +  V       P+ + +RE  A+
Sbjct: 356 EYQTGVKFEERSIPTPKEVREASAR 380


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/522 (30%), Positives = 270/522 (51%), Gaps = 48/522 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  AI  I+   
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 IKS---KITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD--SRAFKVGGGSRDNFKGSSWFSLSV 473
           ++A  + +    L + E    +S     D+   +   R F                 LSV
Sbjct: 419 VSAALMEM----LFSKE----MSFDYTNDKLEAEVPVRLF-----------------LSV 453

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           G K     + L+  +   + +    IG I +    TF++VS+
Sbjct: 454 GRKDSINVKSLLTFIQDEASVKNHEIGDIDILDKFTFMDVSS 495


>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 409

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/337 (36%), Positives = 192/337 (56%), Gaps = 2/337 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+  T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +N+       
Sbjct: 16  LAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLLDNESQDAPKD 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELAVQV +        T + V +  GGVS+  ++ + + G  +++ TPGR
Sbjct: 76  IRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGVDVLIATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R   LN+ +L  +V DEAD MLD+GF D+I+ +L   P +R+ L+FSAT+  +I 
Sbjct: 136 LLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
             +KN  +D   + +A  N   + ++ R   +  SDR    V +++R    +  ++F  T
Sbjct: 196 GFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAARG+D+ DL
Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 200/341 (58%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY ++T++Q   L   L+  D++  A+TGSGKT AFG+ L   L   N RF  A
Sbjct: 17  DALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKL---NPRFFGA 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A   L + PTRELA QVG+E+  L  +     +V +C GG  +  +   L++GAHIVVG
Sbjct: 74  QA---LVLCPTRELAEQVGKEIRKLARFMPNIKLVMLC-GGKPIGPQIGSLEHGAHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L +  L  +VLDEAD MLD+GF D ++ I+  +PK R+ L+FSAT  
Sbjct: 130 TPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTLLFSATYP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +++  Q++ V V + +E+ +   I      V+  DR+ A++++  ++  +  +VF
Sbjct: 190 DTIQHMSRQIQRNPVTVTVEAEHNKEV-IQQVFYEVSKHDRNTALLSLFAHYQPETCVVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+         L       +A+ G+L Q++R   L    +    V +ATDVAARG+D+
Sbjct: 249 CHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L++VI+ EL  +PE  +HR GRTGRAG+ G+++ ++  N
Sbjct: 309 KALQMVINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPN 349


>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
 gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
          Length = 573

 Score =  228 bits (582), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/558 (30%), Positives = 287/558 (51%), Gaps = 40/558 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 22  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 77

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P    P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 78  ----RIDPTKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 133 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 193 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +A
Sbjct: 253 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 313 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 373 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCSPR 429

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R +        
Sbjct: 430 ALAAALLRKATNGQALTLAAIERDRPL-VPNNAPRGDRPERSGSSDRGDRGDRPERERRA 488

Query: 463 ----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+
Sbjct: 489 PVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGL 548

Query: 519 DLLRRTVKLDK--GIQLK 534
           + L   +K  +  G QLK
Sbjct: 549 ERLLTKLKDTRVAGKQLK 566


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 200/344 (58%), Gaps = 5/344 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+++   L E GY   T +Q   +   +  KD++  AQTG+GKT AF L +   +L   +
Sbjct: 32  PELLRAVLDE-GYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQRILPFAS 90

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG 124
              SPA  P+ AL +APTRELA+QV   ++  Y+K   + A+C  GGV +  +  +L+ G
Sbjct: 91  SSPSPAKHPVRALILAPTRELAMQVFESVKT-YSKHTPIRAMCAYGGVDIRPQIAELKKG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+  K ++ + ++A+VLDEAD MLD+GF  D+  IL+  P +R+ L+
Sbjct: 150 VEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLPAQRQSLL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA    K  + + +A  N+    I +R   V+   +   +  +L+    
Sbjct: 210 FSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTKLLKSGEI 269

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVFC T+   SR T+ L     +  A+ G+ SQ ER  AL+  + G     IATDVA
Sbjct: 270 RQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDALIATDVA 329

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+ DL  VI+ EL   PE+ +HR GRTGRAG+KG ++ ++
Sbjct: 330 ARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLV 373


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 170/541 (31%), Positives = 270/541 (49%), Gaps = 22/541 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY   T +Q   + P L  +D+L  A TG+GKT AF L +   +  +       +
Sbjct: 24  ALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVLQRISQDGG----GA 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA+Q    +       G  V    GG  + R+ R L+ G  +VV TPG
Sbjct: 80  EPSALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALERGVDVVVATPG 139

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DHI    L +  L+ +VLDEADEMLD+GF +DI+ IL+ +P  R+ ++FSAT+   I
Sbjct: 140 RALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADRQTVLFSATMPARI 199

Query: 194 TTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+ + +  VR+ I  E     +   +   A +VA + +  A+  +L     +  IVF
Sbjct: 200 DAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDVESPEATIVF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR  V + T+ L    ++  AL G + Q++R   +  +R G A + +ATDVAARG+D+
Sbjct: 260 CRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVATDVAARGLDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  E
Sbjct: 320 EQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKAIERTTRRQIRVE 379

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRI-HR 425
             P+V  +R R  +  L      +SI  D+    + +V+ L  + D   +A   +++ H 
Sbjct: 380 KVPTVADLRARRLE--LTRAALQESIVEDDLDRFRVVVETLTDEFDVMDVALAAVKLAHE 437

Query: 426 AGLCA--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           AG  A   EEI  V+   GR          +   G+R   +G +   +  G       + 
Sbjct: 438 AGGAAVDEEEIPEVAPRGGRGDREGRGAPGRGPRGTRAPAEGMTRLFIGAGRSAGIRPQD 497

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           L+  +   S ++ + IG+I +    + VEV A  VD + R +   +G  LK   G KP  
Sbjct: 498 LVGAIAGESRLSGRDIGSIEIADRFSLVEVPASAVDEVIRAL---RGTTLK---GRKPIV 551

Query: 544 R 544
           R
Sbjct: 552 R 552


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 147/405 (36%), Positives = 225/405 (55%), Gaps = 23/405 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  + + + L+   Y ++T +Q   L   L  +D++  A+TGSGKT AFG+ L   
Sbjct: 17  FSTLPLSRAMLDNLASLEYTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLEK 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119
           L  + D F    A  AL + PTRELA QV +EL  L  +     ++ +C GGV++  +  
Sbjct: 77  L--QVDSF----AVQALVLCPTRELADQVAKELRRLARFTHNIKILTLC-GGVAIGPQLG 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGR+ DH+R   L++  L+ +VLDEAD MLD+GF DDI  ++ S+  +
Sbjct: 130 SLERGAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  ++  YQ+D VRV + S +       +   L     R +A++N+L
Sbjct: 190 RQTLLFSATYPANIQQMSARYQRDPVRVTVESLHTSQQIRQHFYELAEGDSRTSAVINLL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +    + ++FC+T+A        L       +AL G++ Q+ER   L    +    V I
Sbjct: 250 AHFQPASTLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLI 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RA 356
           ATDVAARGID+ DL+ VI+ EL+ + E  +HR GRTGRAG +G+++  V P+ + R  R 
Sbjct: 310 ATDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVRVNRL 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           E   R+           S+EA+ + D   + Q  +   +I G +K
Sbjct: 370 EDYLRQ---------TISLEAVPDSDTNSLPQPVMATLNIDGGKK 405


>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 516

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 205/376 (54%), Gaps = 7/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 10  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           +          AL + PTREL +QV  +   L    G    V I GG  + R+ R L+  
Sbjct: 70  SKHLQ------ALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   +++  +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 124 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  + TL K +Q     +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 184 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R G   + +ATDVA
Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363

Query: 365 VSVVWEPAPSVEAIRE 380
           + +     P+++ + E
Sbjct: 364 IKIEAGKIPTLDDLEE 379


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 202/366 (55%), Gaps = 12/366 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q A L   L+ +D++  A+TGSGKT AFG+ L   L   N R+    A
Sbjct: 19  LAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH++VGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEHGAHVIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I++ +P +R+ L+FSAT    I
Sbjct: 133 RIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTLLFSATYPAGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA  + +   RV + +   QH D  I+ R   +A   R  A+  +LR+   +  + FC
Sbjct: 193 EQLAARFLRTPERVEVEA---QHDDGQIEQRFYEIAPGQRMEAVSTLLRHFRKQPVVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR         L        AL G+L Q++R   L +  +    V +ATDVAARG+D+ 
Sbjct: 250 ATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSLSVLVATDVAARGLDIA 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            LE+VI+ ELS + E  +HR GR+GRAG KG+++ ++      RA+ +       + W P
Sbjct: 310 GLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGRAQAIETLQGRELAWYP 369

Query: 372 APSVEA 377
            P+ +A
Sbjct: 370 LPAAKA 375


>gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 611

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 171/534 (32%), Positives = 266/534 (49%), Gaps = 32/534 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK FE   +   I +A+ E GY N   VQE ++   L E  D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLP 60

Query: 58  LASTL-LAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
           +   + + EN        P AL + PTREL +Q+  +L ++      + V    GG S+ 
Sbjct: 61  VLQKIEVKEN-------VPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+V TPGRL D I  K +++ ++K VVLDEADEML++GF + I+ IL  
Sbjct: 114 SQIKSLKRGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSK 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R ML+FSAT+   I  + K Y +    + I  +N   +++ +   +V   D+  A+
Sbjct: 174 VPDERVMLLFSATMPKEIAKITKKYMQSPKEITIGRKNEGSNNVKHVYYMVHAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I  Y+     I+FC TR         L +  +   +L G+LSQ +R   +Q  R    
Sbjct: 234 KRIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNI 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G S+ ++    + +
Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------- 407
              + +  N        PS EAI E+    ++     ++ ++ +E ++ ++L        
Sbjct: 354 IREIEKIINKKFEQGVIPSGEAICEKQLFSLVDR---IEKVKVNEDEISNLLPSVYRKLD 410

Query: 408 -LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRD-----RFRDDSRAFKVGGGS 459
            L K D  K  +A  F R+      A E  TP    S  D     R +D  R+ +  GGS
Sbjct: 411 WLEKEDIIKRVVALEFNRLIDYYRDADEIETPSDRFSKGDDKSYPRRKDRERSDRSSGGS 470

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           R   KG S   +++G         LM  L       + +IG I +  + +F EV
Sbjct: 471 RGAEKGYSRLFINIGRTDSVNPATLMG-LVNDFVPEKVNIGRIDIMQNFSFFEV 523


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  +  +  
Sbjct: 20  VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P AL +APTRELA+QV    +   +K  G  V    GG    ++   L+ G HIVV
Sbjct: 78  ----PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+
Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAARG+D
Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ F  P  + M R+ ER  R+    
Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373

Query: 367 VVWEPAPSVEAIRE 380
           +     PSVEA+ +
Sbjct: 374 MQL---PSVEAVND 384


>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 562

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 172/558 (30%), Positives = 287/558 (51%), Gaps = 40/558 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +     
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH--- 66

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRD 120
               R  P    P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + 
Sbjct: 67  ----RIDPTKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L 
Sbjct: 182 QTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +A
Sbjct: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + 
Sbjct: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--PLFLD--SIQGDEKKMVDVLLAK--HDPE 414
           R     V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P 
Sbjct: 362 RVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGD---LLDRLTADIGCSPR 418

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-------- 462
            +AA  LR    G    L A E   P+ + +   R     R+     G R +        
Sbjct: 419 ALAAALLRKATNGQALTLAAIERDRPL-VPNNAPRGDRPERSGSSDRGDRGDRPERERRA 477

Query: 463 ----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+
Sbjct: 478 PVPLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGL 537

Query: 519 DLLRRTVKLDK--GIQLK 534
           + L   +K  +  G QLK
Sbjct: 538 ERLLTKLKDTRVAGKQLK 555


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 211/372 (56%), Gaps = 13/372 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  +  +  
Sbjct: 20  VMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQIK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P AL +APTRELA+QV    +   +K  G  V    GG    ++   L+ G HIVV
Sbjct: 78  ----PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGVHIVV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+
Sbjct: 134 GTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAARG+D
Sbjct: 254 FARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ F  P  + M R+ ER  R+    
Sbjct: 314 VERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQPIEE 373

Query: 367 VVWEPAPSVEAI 378
           +     PSVEA+
Sbjct: 374 MQL---PSVEAV 382


>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 214/366 (58%), Gaps = 12/366 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++RG  +L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N   +
Sbjct: 15  IVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIRHIVDGNAENA 74

Query: 71  P--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
           P    +P AL +APTRELA QV RE         ++  VC+ GGV +  ++R L+ G  I
Sbjct: 75  PRQGRSPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVPISMQQRQLERGVDI 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            VGTPGR+ D I    L +  +  +VLDEAD+ML +GF +D+E IL   PK+R+ ++FSA
Sbjct: 132 AVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQLPKQRQSMLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           T+   +  L++ Y    + +++   S+ +    I   A+ +  S + + + +++  HG  
Sbjct: 192 TMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRSILSDLITVHGKG 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+         +  +L    AL G++SQ +R   L   RDG+  V +ATDVA
Sbjct: 252 GKTIVFTQTKRDADDVAMAMG-NLVSCGALHGDISQVQREKTLSAFRDGKIAVLVATDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LVIH E+ ++ E  +HR+GRTGRAGR G ++ +   + Q R  R   E N
Sbjct: 311 ARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMF-TSQQVRTMRTI-ENN 368

Query: 365 VSVVWE 370
           V   ++
Sbjct: 369 VKCKFQ 374


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 197/338 (58%), Gaps = 7/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+   T +Q A +   L  KD++  AQTG+GKT AFG+ L   +  END      
Sbjct: 16  AVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPLIDRINIENDHVQ--- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   L       GV   V  GG  + ++ RDL+N  H+VV TPG
Sbjct: 73  ---ALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQIRDLKNKPHVVVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+R K + +  ++ VVLDEADEML++GF +DIE IL   P +R+ L+FSAT+   I
Sbjct: 130 RLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPNERQTLLFSATMPKRI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ +  +   + + S+     +I+ + V V    + + +   +  H  + AIVF  T
Sbjct: 190 EKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRFIDIHTPELAIVFGRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  ++   + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +
Sbjct: 250 KRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVLVATDVAARGLDITGV 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             V + +L  +PE+ +HR GRTGRAG+ G+++ F  P+
Sbjct: 310 THVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPR 347


>gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 567

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 283/574 (49%), Gaps = 54/574 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +  A+   G+   T +QE  + P L   E+D +  AQTG+GKT A+GL L  ++     R
Sbjct: 12  LARAVESLGFEKPTPIQEKAI-PYLIEGERDFVGLAQTGTGKTGAYGLPLIQSIDLSIPR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P A+ I PTREL +Q+  +L ++      + VA   GG  + ++ R ++ GA I
Sbjct: 71  ------PQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGGAQI 124

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +  TPGRL D I  K +   H+  VVLDEADEML++GF++DI  IL S P +RR  +FSA
Sbjct: 125 IAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWLFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  +A  YQ + V V +   N+   DI +   ++   +R  A+  IL Y      
Sbjct: 185 TMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPDMFG 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC TR       + L    +   AL G+LSQ +R   +   R    +V  ATDVAARG
Sbjct: 245 LVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360
           +D+ D+  VIH  L  +PE   HRSGRT RAG++G S+ +I        ++++RR +  F
Sbjct: 305 LDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGKFSF 364

Query: 361 R-----------EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           +           +  V+ + E   SV ++RE D    + D   L++ +G  ++ +     
Sbjct: 365 QLDSLPQGRDICQKQVAGLAEKLASV-SVRENDIAEYMPD--ILEAFEGLSREEI----- 416

Query: 410 KHDPEKIAAGFLRI----HRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRD 461
               + ++  F R+      AG    +    V   +G    R++     R  K  G  +D
Sbjct: 417 --IQKAVSTEFNRLLDYYRNAGDINAKPREKVKGQAGAKFTREKIVGKGRHGK--GPKKD 472

Query: 462 NFKG--SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
             KG  +  F ++ G   K     ++ ++C +SGI  +SIG I +  + +F EV      
Sbjct: 473 RLKGRKTQRFFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEKSLAP 532

Query: 520 LLRRTVK---LD-KGIQLKYLGGEKPDFRGYKSS 549
            + R ++   LD K +Q++    +KP  +G K +
Sbjct: 533 RVLRGLENATLDGKALQVRAADKQKPAEKGRKKA 566


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 280/558 (50%), Gaps = 43/558 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+   + +Q   +      +D++  AQTG+GKT AFG+ L         +  P  
Sbjct: 31  AVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLLQ-------KIDPKV 83

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             L A+A+ PTRELA+QV  E+  L     GV V    GG  + ++ R L++G  I++GT
Sbjct: 84  KKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKDGTQIIIGT 143

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K +   H+  V++DEADEML++GF +D+E IL   P++R+ +MFSAT+ P
Sbjct: 144 PGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTVMFSATMPP 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ +Q+D V V +  +      +      V    +   +  +L  +  K ++ FC
Sbjct: 204 AIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDMYAPKLSVAFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V    + L    +    L G+L Q +R   +   R+G+  + +ATDVAARGID+ 
Sbjct: 264 NTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEILVATDVAARGIDVD 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           D+E V + +L  + E  +HR GRTGRAGR+G++  FV+ + + +  + + R     +V +
Sbjct: 324 DVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRD-IQRYCKTKIVPQ 382

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPE-----KIAAGFLRIH 424
             PS+  +      +IL+     D+I   D  K V+++  K   E      +AA  L++ 
Sbjct: 383 AIPSLNDVTAIKVDKILE--TVADTIGDTDLSKTVNIIEKKLLEEDYTSLDLAAALLKMM 440

Query: 425 RAGLCAPEEIT----PVSLVSGRDRFRDDSRAFKVG-------------GGSRDNFKGSS 467
                  E+I     P SL    D F       +                 SRD+    +
Sbjct: 441 MGE--ENEDIIDTREPRSL-DELDNFYGGGSRGRSSGRNGSGSSRGGRYDSSRDDM---A 494

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D + + +K 
Sbjct: 495 RLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQAMK- 553

Query: 528 DKGIQLKYLGGEKPDFRG 545
           D  I+ K +  EK + +G
Sbjct: 554 DVKIKGKNIHMEKANGKG 571


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 261/510 (51%), Gaps = 33/510 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL ++G+ + +++Q  ++   L+E+  L+  AQTG+GKT AF + +  TL  +      
Sbjct: 17  KALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPILETLDCD------ 70

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             +  A+ +APTRELA QV  E+  L  K  + V    GG S+ ++ + ++ G  ++VGT
Sbjct: 71  -GSVRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQIKKIKKGIDVIVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +  K + +++L+  VLDEADEML++GF +DIE IL+ + + ++ML FSATI  
Sbjct: 130 PGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNEDKKMLFFSATIPD 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  +AK + KD   + + ++    +  +     V   D+  A+  +L Y      IVFC
Sbjct: 190 SIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRVLDYVHDFYGIVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T++ V    + L    +   A+ G+++Q  R   L+  +  R  + +ATDVAARGID+ 
Sbjct: 250 RTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINILVATDVAARGIDVN 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL  VI+  +   PE+ +HR GRTGRAG+KG+++ FV P+   + + ++ R     +  E
Sbjct: 310 DLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKIS-KIQRLTKTDIKKE 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAGFLRIHR 425
             P +E +     + +      ++ I+ +E       M   LL   DPE + A  LR   
Sbjct: 369 KIPKIEEVISVKKENLYA---CVEEIEKEEDFGYYTGMAKELLGDKDPEVVLASLLRHMY 425

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFSLSVGSKQKAEARW 483
                PE    +S V             K G G   N  G   +   +++G K       
Sbjct: 426 DDEFLPESYNEISEV-------------KTGRGLNANNAGDDKTRLFIALGKKDGYTPGK 472

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           L+ +L + +    + +  I++  + +F+ V
Sbjct: 473 LLDLLNKKAKTPGRKVRDIKIMDNFSFITV 502


>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
 gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16]
          Length = 486

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 203/345 (58%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A    G+   + +Q+A L   L  KDV+  A+TGSGKT AF + +  +LL   
Sbjct: 51  VSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L + PTRELA Q+G++ E L +  G++VAV +GGV +  +   L    H
Sbjct: 111 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRPH 164

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG N+  LK +++DEAD +L++ F  +++ IL   PK+RR  +F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 224

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L +   +D  RV+I++  +   ++    + +    ++  +V +L  H   
Sbjct: 225 SATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGN 284

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+T A+  +   +L +   Q V L G++SQ++R  +L   +     + + TDVAA
Sbjct: 285 SAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAA 344

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ V+ Q
Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQ 389


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 199/355 (56%), Gaps = 8/355 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+S  G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +N          AL I+PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDLDNPDIQ------ALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGRL DHI  + + + H+K +VLDEADEMLD+GF DDIE I+   P+K
Sbjct: 115 SLKDHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  + K++  +   + + S+      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+  V   T+ L    +    + G+LSQQ+R + L+  + GR  V +
Sbjct: 235 DVQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  M+
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEME 349


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 225/406 (55%), Gaps = 14/406 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+   G+   + +Q   +   +  +DV+  AQTG+GKT AF L + S +  +
Sbjct: 110 DLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQIDPQ 169

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    +      G +  + I GG +   +   L+ G
Sbjct: 170 ------LRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSGLRRG 223

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P  +++ +
Sbjct: 224 AQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTKQVAL 283

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  ++K Y  D   V + SE R +++I  R +  A  ++ +AI  IL     
Sbjct: 284 FSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEF 343

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +ATDVA
Sbjct: 344 EAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVA 403

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 404 ARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTN 463

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLA 409
            ++     P+V+ + E    R L+   F+DSI    E K  DV  A
Sbjct: 464 ATIEEMELPTVDEVNE---SRKLK---FMDSITASLESKDQDVFKA 503


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 159/515 (30%), Positives = 262/515 (50%), Gaps = 41/515 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+S+ G+   + +QE  +   L   D++  AQTG+GKT A+ L + +      
Sbjct: 11  LKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPILT------ 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S      AL +APTRELAVQV  E+  L       +    GG S+ R+ R L+ G  
Sbjct: 65  -KMSTNKGIKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRKGVD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+ K L++  ++ +VLDEADEML++GF DDIE IL  +P++R+ L+FS
Sbjct: 124 VVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTLLFS 183

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  LAK Y K DA  V++   +   S I+    ++    R  A+  +L      
Sbjct: 184 ATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC T+  V    + L    + V  + G+++Q  R   L   ++G   + IATDVAA
Sbjct: 244 SAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362
           RGID+  +  V + +L  + E+ +HR GRTGRA R+G +   V P++  M ++ +++ + 
Sbjct: 304 RGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQIQKVTKS 363

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVD---VLLAKHDPEKIAA 418
           A   +  +P P+ E I+ +    I+++    ++I  GD  K +     L+  +DP  + A
Sbjct: 364 A---ITQKPVPTAEEIKNKKFNDIIKE--VTETITSGDLAKFMPNAIELVENNDPLSVVA 418

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++I        E +   S        ++D R F                  SVG +  
Sbjct: 419 ALMKIKYDN----ESVFDYSSDKLEAPKKEDIRLF-----------------FSVGKRDG 457

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              + L+  +   + +N  +IG I +  + +FV V
Sbjct: 458 LTPKVLINYIKDRTRVNASTIGQIDLMENFSFVSV 492


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/516 (31%), Positives = 266/516 (51%), Gaps = 17/516 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A+++  +V  + +Q+  +   L   DVL  AQTGSGKT AF L L + +   N
Sbjct: 13  LPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLLAQI-DPN 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            R      P  L +APTRELA+QV    E       G+ V    GG     + R L+ G+
Sbjct: 72  QRH-----PQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLRALKQGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   LN+S LK++VLDEADEML +GF DD+E ++   P+K +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEKHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + +  D   V I +  R   DI     LV    ++ A++  L      
Sbjct: 187 SATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E+L ++
Sbjct: 307 RGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEQLMKK 366

Query: 363 ANVSVVWEPAPSV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             +  V  P   V  E  RE+   +I +  L    ++   + + ++  A  D E++AA  
Sbjct: 367 P-IDPVAIPNHQVLMEKRREKFKAKISKQ-LEHHDLEKYRELLENLFTADQDHEELAAAM 424

Query: 421 LRIH-RAGLCAPEEITPVSLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           + +  +  L  P +    +L S  GR    + +          +N      + + +G + 
Sbjct: 425 MMLQEKQKLILPPDPEVRNLRSERGRRDRNERNDRRNGREHRENNGVAMDLYRIELGRED 484

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             E R ++  +     IN + IG I++    + +E+
Sbjct: 485 GVEVRHIVGAIANEGDINSRYIGHIKLHDRYSTIEL 520


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 279/545 (51%), Gaps = 27/545 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   P+ 
Sbjct: 81  ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 140

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL +APTRELA+QV  E    YAK      V    GG +   +   L+ GA +VVGT
Sbjct: 141 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 199

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P  R++ +FSAT+  
Sbjct: 200 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATMPS 259

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I F 
Sbjct: 260 QIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRILEVEEFDGVIAFV 319

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D+ 
Sbjct: 320 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 379

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  VI+ ++  + E+ +HR GRTGRAGR G ++ F+ P+   + R  E+  R+    + 
Sbjct: 380 RISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 439

Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421
              A +V  +R  + A+RI +      ++  ++      L+A ++ E      +IAA   
Sbjct: 440 LPTAETVNTLRLGKFAERITE------TLASEDVAPFRDLIASYEEEHNVPASEIAAALA 493

Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            + + G     +E+        R+R +D    F   G +R   +G++ + ++VG +Q+  
Sbjct: 494 VMAQGGQPLLVKELPAAPEFQKRERSKD---GFGSRGPTRALTEGNATYRIAVGRRQRVM 550

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536
              ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+  
Sbjct: 551 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 610

Query: 537 GGEKP 541
            G KP
Sbjct: 611 NGRKP 615


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 22  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 79

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 80  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416


>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 582

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/356 (39%), Positives = 201/356 (56%), Gaps = 13/356 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I EAL+ +G      +Q   L   LR +D++  A+TG+GKT+ FG+ L    +A    N 
Sbjct: 42  IVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQNSVAPGEPNP 101

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P AL + PTRELAVQV  +LE   AK  + +    GG +   +   L+ G  +
Sbjct: 102 ADRPIGTPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQIEALEKGVEV 161

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D +R K L++S ++  VLDEADEMLDLGF +DIE +L + P KR+ ++FSA
Sbjct: 162 VVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVPVKRQTMLFSA 221

Query: 188 TISPAITTLAKNYQKDAVRV---NIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241
           T+   I  LA+ + K    +   +   E+R  +DI    YRA  +   D+   +  IL+ 
Sbjct: 222 TMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQL---DKIEVMARILQA 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G   +I+F  T+    R    LA+  F    L G+L Q  R  AL+  R G+  V +AT
Sbjct: 279 RGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRSGKIDVLVAT 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           DVAARGID+ D+  V++     + +  LHR+GRTGRAG+KG ++ FV  +++ R A
Sbjct: 339 DVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDLARWA 394


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/453 (33%), Positives = 228/453 (50%), Gaps = 17/453 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL +   +  +N      
Sbjct: 14  KAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ R+L+    I+VGTP
Sbjct: 72  ----AIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQHPQILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    + + H+K +VLDEADEML++GF DDIE I+D +P  R+ L+FSAT+ P 
Sbjct: 128 GRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 188 IKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLIDVQDPDLTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+LSQ  R+  ++  + G   + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M   R  E+L R   V ++ 
Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEKLTR---VRMLP 364

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFLRIHRAG 427
              P+ E   +        D   L S    E+  +  + LLA HD   + A  L      
Sbjct: 365 LKPPTAEEAFKGQVASAFNDIDELISQDSTERYQEAAEKLLATHDATDLVAALL---NEM 421

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
              P    PV +   R   R + R  + G G R
Sbjct: 422 TKEPASDVPVKITPERPLPRRNHRNGRSGHGYR 454


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 212/377 (56%), Gaps = 9/377 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I   L E G+ N T +Q   + P +R   DV+  +QTG+GKT+AF +     +  E ++ 
Sbjct: 15  INRVLDEMGFTNPTDIQNKAI-PAIRSGVDVIGKSQTGTGKTIAFAIPAIEKIDIEQEK- 72

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
            P +    L I PTRELA Q   E++ L      +  V I GGVS+ R+   L+  AHIV
Sbjct: 73  -PTAQ--VLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLK-KAHIV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH++ + L + ++K VVLDEADEML +GF++DI+ IL ++P  R+ ++FSAT
Sbjct: 129 IGTPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  +   + K+ + + I  E    + I    + V    +   +  +L Y+G+K  I
Sbjct: 189 MPPAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGSKLTI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+T+  V   TK L ++ F    L G++ Q ERS  +   ++ +  + +ATDVAARGI
Sbjct: 249 IFCNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ-RRAERLFREANVSV 367
           D+ D+E VI+ ++  N E  +HR GRT R G+ G S+ +     Q    + + +E N  +
Sbjct: 309 DVKDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMILKETNSKI 368

Query: 368 VWEPAPSVEAIRERDAQ 384
                P+   I  ++++
Sbjct: 369 KKLDIPTKNDINSKNSK 385


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + KD   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 203/353 (57%), Gaps = 9/353 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QEA +   L   DV+  AQTG+GKT AFGL +   +  + +     
Sbjct: 23  KAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQ-- 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTRELA+Q   EL  L       V V  GG  + R+ + L++   I+VGTP
Sbjct: 81  ----AIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLKHVPQILVGTP 136

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI  K +++SH+K +VLDEADEMLD+GF +DIE I+ + P++R+ L+FSAT+  A
Sbjct: 137 GRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFSATMPKA 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I ++ + +  +   V I ++      +D   V     ++ + +  IL     +  IVF  
Sbjct: 197 IRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPELTIVFGR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L    +    + G+L+QQ R N L+  ++GR  + +ATDVAARG+D+  
Sbjct: 257 TKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAARGLDISG 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           +  V + ++  +PE+ +HR GRTGRAG  G+SV FV P  M+  R  ERL ++
Sbjct: 317 VTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVIERLTKK 369


>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
           (Pfam: helicase_C.hmm, score: 90.11), similar to
           DEAD-box h [Arabidopsis thaliana]
          Length = 477

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 214/367 (58%), Gaps = 14/367 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              ++   +      P  L +APTRELA QV +E++        +  VC+ GGVS   ++
Sbjct: 168 AGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQ 224

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P 
Sbjct: 225 SALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPT 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIV 236
           KR+ ++FSAT+   +  LA+ Y  + + +++  +  +     I   A+    + +   + 
Sbjct: 285 KRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILS 344

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++  Y      IVF  T+      +  L+  +    AL G++SQ +R   L   R G+ 
Sbjct: 345 DLITVYAKGGKTIVFTQTKRDADEVSLALSNSI-ATEALHGDISQHQRERTLNAFRQGKF 403

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R 
Sbjct: 404 TVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRT 463

Query: 356 AERLFRE 362
              L R+
Sbjct: 464 VRSLERD 470


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + KD   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 192/339 (56%), Gaps = 6/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T +Q A +   L  +DVL  AQTG+GKT AF L L   L+  N R   A
Sbjct: 15  QAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLM--NGRAK-A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL IAPTRELA QV    E     T +  A+ IGGVS   + + L  G  +++ TP
Sbjct: 72  RMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P K++ L FSAT+ P 
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           IT L K + KD VR+  +     + +I    V V  SD   +  A+  ++     +  IV
Sbjct: 192 ITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLALRALIEKAQIETGIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  V    K L  H F   A+ G+L Q +R+  L   RDG  ++ +A+DVAARG+D
Sbjct: 252 FCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSLKILVASDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  V + ++  + ++ +HR GRTGRAGR G++  ++
Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLV 350


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  EN    P     AL
Sbjct: 41  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTEN----PVVQ--AL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 95  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLLDL 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 155 IKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGV 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 215 KFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 274

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   + +ATDVAARG+D+  +  V +
Sbjct: 275 ELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAARGLDISGVTHVYN 334

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 335 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 369


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 209/355 (58%), Gaps = 15/355 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFG 55
           MK F ++   P+++ + L+E G +N T +QE  + P L EK  D +  AQTG+GKT A+G
Sbjct: 1   MKTFSDLGISPKLV-KGLTELGIINPTEIQEQAI-PVLLEKPTDFVGQAQTGTGKTAAYG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114
           L +   + A  +         AL + PTRELA+QV ++L ++      +      GG  +
Sbjct: 59  LPMLELINASKNHVQ------ALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ++ + LQ   HI+V TPGRL D ++ K ++++++K VVLDEADEML +GF+ D++ IL 
Sbjct: 113 DKQIKALQRPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           + P  +   +FSAT+   I  +  ++   +A+++ ++ +N  +  I+++ +LV  +D+  
Sbjct: 173 ALPATKNRWLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLT 232

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++  L++ G +  IVFC T+ +     K L        A+ G+L Q+ER   ++  ++ 
Sbjct: 233 TLLQYLKFKGKERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNE 292

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+ +ATD+ ARGID+ DL  V+H EL S  E   HRSGRT RAG++GMS+ ++
Sbjct: 293 SLRILVATDLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIV 347


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/336 (38%), Positives = 191/336 (56%), Gaps = 9/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   T +QEA +   L  KDV+  AQTG+GKT AFGL +        ++  PA+  L  
Sbjct: 20  GFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML-------EKIDPANHQLQG 72

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPGR+ D
Sbjct: 73  LVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLD 132

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L +  ++ +VLDEADEML++GF +DIE I+   P  R+ L+FSAT+ PAI  + 
Sbjct: 133 HINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIKNIG 192

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + K+   V I ++      ID   V     ++ + +  +L     +  IVF  T+  V
Sbjct: 193 VKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLLDVQSPELTIVFGRTKRRV 252

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    ++   + G+LSQQ+R + L+  + G+  + +ATDVAARG+D+  +  V 
Sbjct: 253 DELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDISGVTHVY 312

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 313 NYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 524

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 268/510 (52%), Gaps = 42/510 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+V  T +Q   +   L  +D++  A TG+GKT AFG+ L   L   + +     
Sbjct: 17  SIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLLEMLDYSSKKVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL + PTRELAVQV RE+  L + +  + V    GG S+ R+   L+ G  +VVGTP
Sbjct: 74  ---ALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQINTLKKGIQVVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R K L +   K VVLDEADEML++GF +DI +IL    K+R++ MFSAT+  A
Sbjct: 131 GRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGKERQITMFSATMPKA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ +QK+   + + +     S ++   + +  S + +A+  ++ Y+  + ++VFC+
Sbjct: 191 IIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKLIEYYNPQLSLVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V     +L    + V  L G++SQ  R+  +   R+   +V +ATDVAARGID+ D
Sbjct: 251 TKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVLVATDVAARGIDVDD 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           +E V + ++  + E  +HR GRTGRAG+ G +  F   +++ R  E + R   + +    
Sbjct: 311 IEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE-IQRYTKIKIKSLN 369

Query: 372 APSVEAIRERDAQRILQDPLFLDSI--QG---DEKKMVDVLLAK-HDPEKIAAGFLRIHR 425
            PS + +  +  +  L +   ++ I  QG   D    V+ L+A+ +   +IAA  ++++ 
Sbjct: 370 VPSEKDVNTKRMESFLGE---INDILEQGNLSDYVPAVEELIARGYTSMEIAAALIKMN- 425

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGSKQKAEARW 483
                         VS R   ++++       G+++N +      L  S GSK     R 
Sbjct: 426 --------------VSKRAYSQNEA-------GAKNNNRDREMIKLFVSAGSKHNIRVRD 464

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++  +   +GI    IG+I +    ++VEV
Sbjct: 465 IVGAITGEAGIPGDRIGSIELLSKHSYVEV 494


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 260/531 (48%), Gaps = 48/531 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL + GY   + +Q   +   L+ KDVL  AQTG+GKT AF L + S + L + D     
Sbjct: 23  ALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILSRIDLKQKD----- 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV    +   A   G  V    GG     + R L+ GAH+VVGT
Sbjct: 78  --PQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLRQLKRGAHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   LN+  L  +VLDEADEML +GF DD+E+ILD  P+KR++ +FSAT+  
Sbjct: 136 PGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEKRQIALFSATMPS 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ Y  +   + I        +I  R  LV+   + +A+  IL        I+F 
Sbjct: 196 VIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVHKLDALTRILEAETFDGMIIFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ S     + L    +   A++G++SQ  R  A+  +++G+  + IATDVAARG+D+ 
Sbjct: 256 RTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILIATDVAARGLDVD 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAERLFREAN 364
            +  V++ ++  + E+ +HR GRTGRAGR G ++ F+ P+      N+++  ++   E  
Sbjct: 316 RITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANIEKATKQKVEEMG 375

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +       PS E I  +   R  Q+    D++  +E      LL ++  E      L I 
Sbjct: 376 L-------PSTEVINNKRISRFKQN--ITDTLAAEELSFFSQLLEQYQQEHNVTA-LEIA 425

Query: 425 RAGLCAPEEITPVSL--------------------VSGRDRFRDDSRAFKVGGGSRDNFK 464
            A     +  TP+ L                     +  DR + D +  +  GG  D   
Sbjct: 426 SALAKLVQGETPLLLQNLPKKSKDSRDDRPSRDDRSARPDRPQKDRKPKRAFGGGAD--I 483

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               + + VG     +   ++  +   +GI+   I  IR+Q D + VE+ A
Sbjct: 484 EMETYRIEVGHTHGVKPGNIVGAIANETGIDGDHIARIRIQDDYSTVELPA 534


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 19/383 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+++ +AL E GY + T +Q   +   L  +DVL  AQTG+GKT AF L + +++  +
Sbjct: 16  QLPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILASIDIQ 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                  + P AL +APTRELA+QV     R  E+L    G  V    GG     + R L
Sbjct: 76  Q------AEPQALVLAPTRELAIQVAEAFQRYAEYL---KGFHVVPIYGGQDYGIQFRML 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VVGTPGR+ DHIR   LN++HLK +VLDEADEML +GF DD+E+IL+ +P  R+
Sbjct: 127 RRGVQVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT+ P I  +A+ Y      V I ++      I  R  +V  S + + +  IL  
Sbjct: 187 VALFSATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGGSHKLDILTRILEV 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+       + L    +   AL+G++ Q +R   ++ +++G   + +AT
Sbjct: 247 EPFDGMIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINIVVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAER 358
           DVAARG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++ FV P  +NM    E+
Sbjct: 307 DVAARGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLYAIEK 366

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
             R     +V    P+ E I  +
Sbjct: 367 ATRSRIEQMVL---PTTEVINNK 386


>gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII]
 gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 664

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   + A+        
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +P  L +APTRELAVQV   L        GV V    GG     + R L+ G  +VVGTP
Sbjct: 75  SPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251
           I  + + + K+   V I S      DI      V    R N A+V  L       AI+F 
Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+ 
Sbjct: 255 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++    
Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 374

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ + + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 375 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 428

Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466
           ++    R  +  PE    P    + RD   +D  +   G   RDN   S           
Sbjct: 429 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 488

Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513
                         + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 489 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 548

Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
                + +    RT  L+K + ++ LG  +P  R
Sbjct: 549 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 582


>gi|303325606|ref|ZP_07356049.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302863522|gb|EFL86453.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 541

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 207/374 (55%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  A +  G+ +L  VQ   L   L  +D++V ++TGSGKT  + L +   L  E
Sbjct: 48  DLPEAMHAACARAGWQSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLDPE 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   AP AL +APTRELAVQV RE   ++A TG+      GGV   ++   L+ GA
Sbjct: 108 ------LKAPQALVLAPTRELAVQVEREAAVIFADTGIRTVAVYGGVGYKKQMDALREGA 161

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLM 184
            ++VGTPGR+ DH+  + L++  L+ +V DEAD ML +GF  D++ +    PKKR    +
Sbjct: 162 QVIVGTPGRVLDHLLRRTLDLKDLRVLVFDEADRMLSIGFYPDMKEVQRYLPKKRIHTCL 221

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  LA  +  +   ++++ +    +++ +    V   D+D A+V +L     
Sbjct: 222 FSATYPPHVLKLAAEFMSEPALLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETENP 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+T+A+V   T VL    +    LS +LSQ  R   L  +R GR +  +ATDVA
Sbjct: 282 ASAIIFCNTKANVHYVTGVLQGFGYSADELSADLSQNRREAVLDKIRKGRLQYLVATDVA 341

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   ER+ +   
Sbjct: 342 ARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELERIAKHYK 401

Query: 365 VSVVWEPAPSVEAI 378
           + ++  P P+ E +
Sbjct: 402 IGLMELPLPTDEDV 415


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 199/356 (55%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+ +D++  A+TGSGKT AFGL L + L   N R+    A
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLLAPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH+VVGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R+ L+FSAT    I
Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK + +D  +V + S +   S I+ R   +    R +A+V +L++   ++ + FC T
Sbjct: 193 EKLAKAFMRDPQQVKVESLHTD-SQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R         L  H    +AL G+L Q+ER   L +  +    V +ATDVAARG+D+  L
Sbjct: 252 RQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVLVATDVAARGLDIAAL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           E VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ +       + W
Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367


>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 457

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY   T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 31/403 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+V+  AL  +G+   T++Q   +   L  +DVL  A+TG+GKT+AF L +A 
Sbjct: 3   FKDFALRPEVLA-ALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIAH 61

Query: 61  TL---------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            L         +A   R  P   P A  + PTRELA+QV  EL W+     V+     GG
Sbjct: 62  KLEAPFRGDSRVASRQRGRP---PRAFILTPTRELALQVAGELAWVAPHLHVLP--IYGG 116

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
                +   L+ GA +VV TPGR  D++    L++SH++  VLDEADEML +GF +D+E 
Sbjct: 117 TGYGSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEK 176

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +L ++P  R+  +FSAT+      LA+ Y +D V VN+  +  +    +  A+   L  R
Sbjct: 177 LLGATPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKD--EQVSYEELALQAPLQTR 234

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            N + +++  +  +  IVF  T+A V      L         + G++SQ+ER   L   R
Sbjct: 235 LNTLTDVIFAYAPERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFR 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIP- 349
           +G   V +ATDVAARG+D+P+++LV+H  L    E   HRSGRTGRAGR G + +F  P 
Sbjct: 295 EGTDTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPR 354

Query: 350 -----QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
                +N++   +R F+  N        P+ E ++E   QR+L
Sbjct: 355 ERRELENLEYAVKRRFKRVN-------PPTPEEVQEAKWQRLL 390


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 38  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 95

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 96  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+ P
Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 211

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 392 L---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 432


>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 457

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 204/354 (57%), Gaps = 18/354 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL---------ALASTLLA 64
           AL+ +GY   T +Q A +   L   D+L +AQTG+GKT AF L         A AST   
Sbjct: 17  ALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAST--- 73

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ 
Sbjct: 74  -----SPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRA 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L
Sbjct: 129 GCEIVVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++    
Sbjct: 189 LFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLH 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+
Sbjct: 249 MNQVIVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 309 AARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 362


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 158/529 (29%), Positives = 269/529 (50%), Gaps = 39/529 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A++++G+   T++Q   + P ++  D  ++V AQTG+GKT AFGL L   +       +
Sbjct: 25  DAINKKGFEEPTAIQVMTI-PVMQRDDTNIIVQAQTGTGKTAAFGLPLVEMV------ST 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +S   AL + PTRELA+QV  E+  L     +V+A   GG S+ ++ R LQ G HIVVG
Sbjct: 78  GSSMVQALILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQLRRLQKGVHIVVG 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  K L +  ++ ++LDEADEML++GF +DIE I+  +   +R L+FSATI 
Sbjct: 138 TPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNPDKRTLLFSATIP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  Y K    + +  E    +  +     V   D+  A+  I+        ++F
Sbjct: 198 QRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAHDKFEALCRIIDIKDGFYGLIF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T++ V      L +  +   A+ G++SQ +R   L+  +  R  + +ATDVAARGID+
Sbjct: 258 CRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNILVATDVAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN------MQRRAERLFREA 363
            +L  VI+  L  + E  +HR GRTGRAG  G ++ F+ P        +QR A+   +++
Sbjct: 318 NNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMFIQRNAKTDIKKS 377

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  V +   + +     D   IL++ +    +    +     +L  + PE+I A  L  
Sbjct: 378 KVPKVKDIIKAKKKKIYDDLTTILKEEIDTAYLSWAVR-----MLEDNKPEEILAAVL-- 430

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD--NFKGSSWFSLSVGSKQKAEA 481
                C  EE+ P       D + +     ++G   +   N +G +   +++G + K   
Sbjct: 431 ---NYCFEEELNP-------DAYGEIE---EIGAKVKQQLNKQGKARLFVALGKQDKTSP 477

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           R L+ ++   S +  + I  I++    +F+ V  +  +++  + K +KG
Sbjct: 478 RKLVELIGSKSSVKSKDISEIQIMDKFSFITVPFEKAEIIVASFK-EKG 525


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 167/541 (30%), Positives = 266/541 (49%), Gaps = 40/541 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+++ G+   + +Q   +   +   D++  AQTG+GKT AFG    S +L  
Sbjct: 11  NLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFG----SIIL-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+       P AL +APTRELA+QV  EL  +     + +    GG  + R+ R L+NG 
Sbjct: 65  NNMSEKRRVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQLRALRNGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+R K LN   +K +VLDEADEML++GF DDIE ++ S  + R+ L+F
Sbjct: 125 DIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNEDRQTLLF 184

Query: 186 SATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+  AI  L+K Y K DA  ++I       S I      +  SDR  ++  I+     
Sbjct: 185 SATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCRIIDADEP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+FC T+  V      +    + V  + G+++Q +R N L+  ++      +ATDVA
Sbjct: 245 EAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDFLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+ +L  + E+ +HR GRTGRA ++G +  ++        +++ +   
Sbjct: 305 ARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLKQIEKTTK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGF 420
             +     P+V+ I +   + +L      D+I+ ++         + D +     +AA  
Sbjct: 365 SKIKRNSVPTVDEIYDVKYKNVLNK--VRDTIENEDLSKFIPYATELDDDYSLVDVAAAL 422

Query: 421 LRIHRAGLCAPEEIT-------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           ++I  +   A E  T       P+   S R   R   R F V  G RDN           
Sbjct: 423 MKIAFSNELAYEYTTNALEVPEPMRNSSARGASRGQKRLF-VSAGRRDN----------- 470

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
                   + L+     SS I  + IG I +  + +FV V    VD +   +K   G +L
Sbjct: 471 -----VSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVDDI---LKFSSGKRL 522

Query: 534 K 534
           K
Sbjct: 523 K 523


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 17/387 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A++  GYVN T +Q   +   +  +DVL  AQTG+GKT AF + +   +   
Sbjct: 18  NISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQAIDLS 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
                 +SA   L +APTRELA+QV    E   A   G+ VA   GG     + R L  G
Sbjct: 78  ------SSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNRG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ DHIR   L +  LK +VLDEADEML +GF +D+E+IL+ +P +R++ +
Sbjct: 132 AHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIAL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + K+   + I         I  R + V    ++  +  IL     
Sbjct: 192 FSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEAVLARILETEPI 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+++     + LA   ++  ALS ++ Q +R   ++ ++ GR  + IATDVA
Sbjct: 252 DAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361
           ARG+D+  +  VI+ +L S+ E+ +HR GRTGRAGR+G ++ F+ P+     RR E++ R
Sbjct: 312 ARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRIEQVTR 371

Query: 362 EANVSVVWEP--APSVEAIRERDAQRI 386
           +       EP   P+   + ER  +R 
Sbjct: 372 QP-----IEPMQVPAAAQVNERRIERF 393


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 209/362 (57%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL L   +  +  +F   S 
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DASQFITQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV   L  L  +     V+ +C GG+    +R  L +  HI+V TP
Sbjct: 75  ---LVLCPTRELADQVASALRKLARFMPNIKVLTLC-GGLPFSVQRDSLTHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L+ +VLDEAD MLD+GF D ++ ++  +P+KR+ L+FSAT    
Sbjct: 131 GRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADALDEVIAWAPEKRQTLLFSATWPAE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q+D + + I + +   + ++ R   V+ S +   +  +L  H   + +VFC+
Sbjct: 191 IAAISRRIQRDPLTIEIDTVDELPA-VEQRFYEVSRSGKIGLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L++    V+AL G++ Q++R   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+VI+ ELS +PE  +HR GRT RAG +G+++ +      +RA  L    NV + W+P 
Sbjct: 310 LEMVINYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANALEEMLNVKLDWQPL 369

Query: 373 PS 374
           P+
Sbjct: 370 PN 371


>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56']
 gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 812

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 198/341 (58%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+E GYV+ T VQ A+  P  R +D +V A+TG+GKT AFGL +    +    + S A
Sbjct: 41  ETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVDHAV----KRSLA 96

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + LA+ PTRELA+QV  E+E L  + G+ V    GG  + R+   L  GA ++VGTP
Sbjct: 97  QAQV-LALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDALAAGAQVIVGTP 155

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   +   H++ +VLDE DEML +GF  ++  IL   P +R+ L+FSAT+ P 
Sbjct: 156 GRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPERQTLLFSATLPPD 215

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A++  +    + ++ +      I +   L+   D+  ++V I+     +NA++FC+
Sbjct: 216 IERIARSKLRSPEFITLSGDAVGALQIQHYVYLIT-GDKLTSLVRIIEVENPENAVIFCN 274

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    +    L+G+L Q +R   +   R+GR R  +ATDVAARGID+  
Sbjct: 275 TKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVATDVAARGIDISH 334

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
           L  VI+ +   + E  +HR+GRTGRAGR G ++ +I PQ++
Sbjct: 335 LTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E       +   AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE------ATIQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + KD   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 211/378 (55%), Gaps = 11/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L   
Sbjct: 9   NLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRVQ------TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++  L  +VLDEAD MLD+GF + I+ I++++P KR+ L+
Sbjct: 123 AHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHG 243
           FSAT    I +L++        V + S   Q S I+ R   L +  +RD+A+  +L  H 
Sbjct: 183 FSATFPDNIESLSEKVMVAPEMVKVES-THQKSTIEQRFFKLNSTEERDDALEALLLTHK 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++++VFC+T+  V   T  L+   F VV L G++ Q+ER  AL M  +    + +ATDV
Sbjct: 242 PESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    
Sbjct: 302 AARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYM 361

Query: 364 NVSVVWEPAPSVEAIRER 381
           +++V   P+   E + ER
Sbjct: 362 DIAV--SPSELPEKLIER 377


>gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10]
 gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 669

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   + A+        
Sbjct: 26  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +P  L +APTRELAVQV   L        GV V    GG     + R L+ G  +VVGTP
Sbjct: 80  SPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 140 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251
           I  + + + K+   V I S      DI      V    R N A+V  L       AI+F 
Sbjct: 200 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 259

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+ 
Sbjct: 260 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 319

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++    
Sbjct: 320 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 379

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ + + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 380 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 433

Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466
           ++    R  +  PE    P    + RD   +D  +   G   RDN   S           
Sbjct: 434 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 493

Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513
                         + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 494 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 553

Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
                + +    RT  L+K + ++ LG  +P  R
Sbjct: 554 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 587


>gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 640

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 175/565 (30%), Positives = 277/565 (49%), Gaps = 43/565 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L + +           
Sbjct: 20  ALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNNIDPN------LK 73

Query: 74  APLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     E+     GV V    GG     + R L+ G  IVVGTP
Sbjct: 74  APQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQLRALRQGPQIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+  +  +FSAT+  A
Sbjct: 134 GRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + K + KD   V I S      DI  ++   A   + +A+V  L       AI+F  
Sbjct: 194 IRRITKRFMKDPQEVRIQSSVTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIFVR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 253 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 313 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 372

Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLR 422
           P+ E + ER     A ++ Q       ++  +  M   LL+K  PE+      +AA  L+
Sbjct: 373 PNAELLGERRLAKFAAKVQQ------QLESSDLDMYRALLSKMQPEEDLDMETLAAALLK 426

Query: 423 I---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------------S 467
           +    R  +  P+   P          R DSR  +   G RD+  G              
Sbjct: 427 MAQGERPLILPPDAPRPQRREFRDRDDRRDSRDSRDSRGPRDSRDGDRPRRERRDVGEMQ 486

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG     E R ++  +     I+ + IG I++    + +E+      + +    R
Sbjct: 487 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 546

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKS 548
           T  L+K + ++ LG  +P  RG ++
Sbjct: 547 TRILNKPMNMQLLGDAQPFERGERN 571


>gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 559

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 172/554 (31%), Positives = 288/554 (51%), Gaps = 35/554 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   L+
Sbjct: 11  LELHPNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH-LI 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDL 121
             + R      P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + +
Sbjct: 69  DPSKR-----EPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKAI 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+
Sbjct: 123 RNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L  
Sbjct: 183 TVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEV 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +AT
Sbjct: 243 EDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R
Sbjct: 303 DVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIER 362

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLD--SIQGDEKKMVDVLLAK--HDPEK 415
                V     P  +A+ +   +++     PL  D  S  GD   ++D L A     P  
Sbjct: 363 VTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGD---LLDRLTADIGCSPRA 419

Query: 416 IAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--------- 462
           +AA  LR    G    L A E   P+ + +   R     R+     G R           
Sbjct: 420 LAAALLRKATNGQALTLAAIERERPL-VPNNAPRGDRPERSGSSDRGDRPERERRAPVPL 478

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
            +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L 
Sbjct: 479 AEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLL 538

Query: 523 RTVKLDK--GIQLK 534
             +K  +  G QLK
Sbjct: 539 TKLKDTRVAGKQLK 552


>gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
 gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
 gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 559

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 164/547 (29%), Positives = 279/547 (51%), Gaps = 29/547 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +     
Sbjct: 15  PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
                  P AL +APTRELA+QV    E  YAK   GV V    GG  +  + R ++NGA
Sbjct: 73  -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++F
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I ++A+ + ++   V I ++ +  + I+   ++V    +  A++ +L      
Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ +A+ +   +++     PL  ++ +    ++ D L          +A+  L
Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTTDLGCSARALASALL 425

Query: 422 RIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469
           R    G    L A E   P+  S     +R     R  +   G R+        +G    
Sbjct: 426 RKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRVRC 485

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             ++G++    A+ L+  +    G+ R +IG I+V+   + VE+  DG++ L   +K  +
Sbjct: 486 RTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTR 545

Query: 530 --GIQLK 534
             G QLK
Sbjct: 546 VAGKQLK 552


>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 664

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/413 (34%), Positives = 225/413 (54%), Gaps = 17/413 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L     DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYEHPMPVQEEVI-PYLLGVNNDVVALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   + A  +         AL ++PTREL +Q+  +LE  Y+K   GV V    GG ++
Sbjct: 60  PVLQKVDASRNETQ------ALILSPTRELCLQIADDLEN-YSKYLPGVRVLPVYGGANI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G  ++V TPGRL D +  K  ++ H++ VVLDEADEML +GF + I+ IL 
Sbjct: 113 EPQIRTLRKGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+    L+FSAT+S  I  ++K Y +DA  + + S N     +++   +V   D+  A
Sbjct: 173 GVPENHNTLLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNHVYYMVHAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+    AI+FC TR         L +  +   +L G+LSQQ+R   +Q  R  R
Sbjct: 233 LKRIVDYYPKIYAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHR 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ ++    + 
Sbjct: 293 VQFLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERS 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + +      V    PS + I  +   +++ D   ++ ++ DE+++   L
Sbjct: 353 KIREIEKVIGKEFVKGEMPSGKEICAKQLYKVIDD---IERVEVDEEEIEQFL 402


>gi|218887342|ref|YP_002436663.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758296|gb|ACL09195.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 990

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 9/378 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
              N+P ++ EA +  G+ NL  VQ   L     ++D++V ++TGSGKT AF L L    
Sbjct: 112 TLANLPPMMQEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLLPLL--- 168

Query: 63  LAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               +R SP   A  AL + PTRELA+QV  E   L+  TG+ VA   GGV   ++   L
Sbjct: 169 ----ERLSPDEPAVQALILVPTRELALQVEYEARVLFEGTGLNVAAVYGGVGYGKQMDAL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++GAH+VVGTPGR+ DH+  + +N+  ++A+V DEAD ML +GF  D++ I    PK+R 
Sbjct: 225 RDGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRI 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              +FSAT  P +  LA  +  +   ++++ +    +   +        D+D A+V I+ 
Sbjct: 285 SAYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRIIE 344

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC+T+A+V   T VL    +    LS +L+Q +R   L  +R G  R  +A
Sbjct: 345 SENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVA 404

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+PDL  VI  E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ 
Sbjct: 405 TDVAARGIDIPDLSHVILYEPPEDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIA 464

Query: 361 REANVSVVWEPAPSVEAI 378
           +   + +   P P  E++
Sbjct: 465 KHYKIDIQHRPTPDDESV 482


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 166/554 (29%), Positives = 286/554 (51%), Gaps = 59/554 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY + + +Q A + P L   DV+  AQTG+GKT AF + +   L     +     
Sbjct: 43  AIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILMGLEVTGRQ----- 97

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P AL +APTRELA+QV      +     G+ V    GG S   +   L+ GAH+VVGTP
Sbjct: 98  -PRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTP 156

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S L+ +VLDEADEML +GF++D+E IL  +P+++++ +FSAT+  A
Sbjct: 157 GRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPREKQVALFSATMPAA 216

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++K Y ++ V + + ++ + +++I  R V V+   + +A+  +L     +  I+F  
Sbjct: 217 IRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVLEVEPFEAMIIFVR 276

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L    F   A++G+++Q +R   +  ++ G   + +ATDVAARG+D+  
Sbjct: 277 TKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILVATDVAARGLDVDR 336

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVSVVW 369
           +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  ++ +  ER  R     +  
Sbjct: 337 ISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAIERATRHPLEEMQL 396

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP--EKIAAGFLRIHRAG 427
              PSVE +   +AQR+ +   F D+I        + L + + P   K+   + R H   
Sbjct: 397 ---PSVEDV---NAQRVSK---FGDAI-------TENLSSANLPLFRKLIEDYEREHNIP 440

Query: 428 LCAPEEITPVSLVSGRDRFRD---------------DSRAF--KVGGGSRDNFKGS--SW 468
           L        V    G + F +                +R F  + GGGS     G+  + 
Sbjct: 441 LVDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARRFDEERGGGSHHRATGTELAT 500

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRT 524
           + +SVG + +     ++  +    G+ R   G I ++PD + VE    + A+ ++ LRRT
Sbjct: 501 YRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAQLPAETLEALRRT 560

Query: 525 --------VKLDKG 530
                   ++LD+G
Sbjct: 561 RISGVLIQLQLDQG 574


>gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           32953]
 gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua]
 gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516]
 gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F]
 gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           31758]
 gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10]
 gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola]
 gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]
 gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92]
 gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516]
 gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua]
 gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92]
 gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F]
 gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           Angola]
 gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004]
 gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038]
 gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 664

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 175/574 (30%), Positives = 273/574 (47%), Gaps = 55/574 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   + A+        
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAD------LK 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +P  L +APTRELAVQV   L        GV V    GG     + R L+ G  +VVGTP
Sbjct: 75  SPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251
           I  + + + K+   V I S      DI      V    R N A+V  L       AI+F 
Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAAIIFV 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+ 
Sbjct: 255 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++    
Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVE 374

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ + + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  L
Sbjct: 375 LPNADLLSERRLAKFAAKVSQ------QLESSDLDMYRALLAKLQPEEEFDIETLAAALL 428

Query: 422 RI---HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------- 466
           ++    R  +  PE    P    + RD   +D  +   G   RDN   S           
Sbjct: 429 KMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGER 488

Query: 467 ------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513
                         + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 489 PARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 548

Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
                + +    RT  L+K + ++ LG  +P  R
Sbjct: 549 KGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 582


>gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans]
 gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 489

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 204/345 (59%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A    G++  + +Q+A L   L+ KDV+  A+TGSGKT AF + +  +LL   
Sbjct: 51  VSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L + PTRELA Q+G++ E L +  G++ AV +GGV +  +   L    H
Sbjct: 111 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 164

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG N+  LK +++DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 165 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYLF 224

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L +   +D  RV+++S  +   ++    + V    ++  +V +L  H   
Sbjct: 225 SATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGN 284

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+T A+  +   +L +   Q V L G++SQ++R  +L   +     + + TDVAA
Sbjct: 285 SAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAA 344

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ V+ Q
Sbjct: 345 RGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQ 389


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 197/337 (58%), Gaps = 11/337 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  EN        P+  
Sbjct: 67  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTEN--------PIVQ 118

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL 
Sbjct: 119 ALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPGRLL 178

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +
Sbjct: 179 DLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRI 238

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
              + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  
Sbjct: 239 GMKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRR 298

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V
Sbjct: 299 VDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHV 358

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 359 YNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 395


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 261/521 (50%), Gaps = 29/521 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+++ GY   + +Q A +   L   DV+  AQTG+GKT AF + + S +  ++ 
Sbjct: 22  PAVL-QAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPILSKIDTDSR 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL +APTRELA+QV        A   V V    GG S   +   L+ GA +
Sbjct: 81  NTQ------ALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSGLKRGAQV 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +++ +FSA
Sbjct: 135 VVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L        
Sbjct: 195 TMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLEVEQGDAM 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +ATDVAARG
Sbjct: 255 IVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVATDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREAN 364
           +D+  +  V++ ++  +PE+ +HR GRTGRAGR G + +FV P  +++    ER+ R+  
Sbjct: 315 LDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIERVTRQ-- 372

Query: 365 VSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414
             +V    PSVE + E+   +        L+ P   LF   I+G E+   DV +A     
Sbjct: 373 -KLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDH-DVPMA----- 425

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA      R G        P      R          +     R+     + + ++VG
Sbjct: 426 DIAAALALQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATYRIAVG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            + K     ++  +    G++R   G I ++ D + VE+ A
Sbjct: 486 KRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPA 526


>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/393 (34%), Positives = 213/393 (54%), Gaps = 13/393 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + S L  +  R    
Sbjct: 17  ETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 75  ----ALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I++++PK+R+ L+FSAT   
Sbjct: 131 PGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQTLLFSATFPE 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+   K    + + S +   S   Y   +     RD A+ N+L  +  ++A+VFC
Sbjct: 191 KIEKIAQRIMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANLLLTYQPESAVVFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L    F V+ + G+L Q+ER  AL    +    + +ATDVAARG+D+ 
Sbjct: 251 NTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+     + VV   
Sbjct: 311 NLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPAT 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 371 LPA------KSNQQPYQAKMVTINIDGGKKQKV 397


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + KD   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/406 (34%), Positives = 227/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P 
Sbjct: 38  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ 95

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 96  ----ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+ P
Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 211

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 392 L---PSVDAVNDTRVVRFMTR--ITETLAGGQIDMYRDLLQRYEAE 432


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 198/356 (55%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S L   N R+    A
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH+VVGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R+ L+FSAT    I
Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK + +D  +V + S +   S I+ R   +    R +A+V +L++   ++ + FC T
Sbjct: 193 EKLAKTFMRDPRQVKVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R         L       +AL G+L Q+ER   L +  +    V +ATDVAARG+D+  L
Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           E VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ +       + W
Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367


>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 459

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R     
Sbjct: 18  TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 74

Query: 74  APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 75  ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    +++S L  +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT    
Sbjct: 132 GRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+   +    + + S +   S   Y   +     RD A+ N+L  H  ++A+VFC+
Sbjct: 192 IEQIAQRIMQTPEVIKVESTHDTSSIAQYFYKVEGSEARDEALANLLLTHQPESAVVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    F V+ + G+L Q+ER  AL    +    + +ATDVAARG+D+ +
Sbjct: 252 TKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+     + VV    
Sbjct: 312 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 371

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 372 PA------KSNQQPYQAKMVTINIDGGKKQKV 397


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 224/406 (55%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S       +    
Sbjct: 22  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLHQVK---- 77

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 78  --PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +FSAT+ P
Sbjct: 136 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALFSATMPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 376 L---PSVDAVNDTRVARFMSR--ITETLAGGQIDMYRDLLQRYEAE 416


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 168/523 (32%), Positives = 263/523 (50%), Gaps = 42/523 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E GY N T +Q   +   L  +D+L  AQTG+GKT AF L + S +          
Sbjct: 22  KALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILSNITIAR------ 75

Query: 73  SAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P AL +APTRELA+QV     R  E+L    G  V    GG     + R L+ G H+V
Sbjct: 76  REPQALVLAPTRELAIQVAEAFHRYAEYL---KGFHVLPIYGGQDYGIQLRMLKQGVHVV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+ILD +PK R++ +FSAT
Sbjct: 133 VGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  +A+ Y  +   + I ++      I  R  +V  S + + +  IL        +
Sbjct: 193 LPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRILEVEPFDGIL 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+       + L    +   AL+G+++Q  R   ++ ++ G   + IATDVAARG+
Sbjct: 253 IFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVIATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANV 365
           D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P  +NM    E+  R+   
Sbjct: 313 DVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEKATRK--- 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD-PEKIAAGF 420
            +     PS E I  +   +  Q     D+I   E     ++++    +HD PE  AA  
Sbjct: 370 RIELMELPSTEIINNKRISKFKQR--ITDTIAAGELDFYSRLIEQYCHEHDVPELDAAAA 427

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSW-------FS 470
           L     G       TP+ L +  +R RD     R+    G ++   KG  +       + 
Sbjct: 428 LASLLQGE------TPLLLSAKPERTRDHDDRPRSQSDSGFAKKRKKGEMYGDEGRQRYR 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + VGS    +A  ++  +    G++ +++G I +    + VE+
Sbjct: 482 IEVGSTHGVKAGNILGAIINEIGLDPEAVGQISISDTYSSVEL 524


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTIQ------ALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
 gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
          Length = 459

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 205/352 (58%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  +  
Sbjct: 13  PELL-HTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ ++D++PK+R+ L+FS
Sbjct: 126 ILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I ++A    ++   V + S +   S   +   L     RD+A+  +L +H  ++
Sbjct: 186 ATFPKQIKSVADRIMRNPEMVKVESTHDHSSIQQHFYKLEGSEARDDALELLLLHHQPES 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+  V   T  L+   F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 AVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           G+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++ F   + M R A+
Sbjct: 306 GLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQ 357


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 199/356 (55%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S L   N R+    A
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH+VVGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R+ L+FSAT    I
Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK + +D  +V + S +   S I+ R   +    R +A+V +L++   ++++ FC T
Sbjct: 193 EKLAKTFMRDPRQVRVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSSVAFCQT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R         L       +AL G+L Q+ER   L +  +    V +ATDVAARG+D+  L
Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           E VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ +       + W
Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 257/473 (54%), Gaps = 26/473 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+VI +A++E G+   T +Q   +   L+ +D++  AQTG+GKT AFG+ L + + 
Sbjct: 7   FDLEPKVI-QAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPLINKIS 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +++        AL +APTRELA+QV  E+E L    G+      GG  + R+ R L+ 
Sbjct: 66  RSDEKIR------ALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKK 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I++GTPGRL DHI  K + +  +  VVLDEADEMLD+GF +DI+ IL   P +R+ +
Sbjct: 120 KPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ + K+   V++  +      ID   + V    +  A+  ++    
Sbjct: 180 LFSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLIDMES 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V +ATDV
Sbjct: 240 PELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR--AERLF 360
           AARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +  FV P+ +      ER+ 
Sbjct: 300 AARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERVT 359

Query: 361 REANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
           R     +  +P P++ EA+  +  QRI+ + L L++++  E    K +   +L ++D  +
Sbjct: 360 RH---RIPRKPLPTLAEALEGK--QRIIAERL-LEAVESGELNEYKGLAIQMLEQYDSVQ 413

Query: 416 IAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           + +  L++       A  E+TP   +  + R  D     + GG    N+ G S
Sbjct: 414 LLSAALKLMTGEKREASIELTPEDPIRAKRRKPD----VRSGGRKPSNYSGRS 462


>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
 gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
          Length = 604

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 132/383 (34%), Positives = 211/383 (55%), Gaps = 9/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +ALS+ GY   +++Q   + P L  KD++  AQTG+GKT AF L + + L A+
Sbjct: 14  QLPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLDAK 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                  + P AL +APTRELA+QV    +  YA+   G  V    GG     + R LQ 
Sbjct: 74  ------LAKPQALVLAPTRELAIQVAEAFQK-YARHSKGFKVLPIYGGSDYRTQLRQLQR 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H++VGTPGR+ DH+R   L++S LK +VLDEADEML +GF DD+E+IL+ +P +R++ 
Sbjct: 127 GVHVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIA 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  +A+ +      + I  +   ++ I  R  ++    + +A+  IL    
Sbjct: 187 LFSATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETED 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  TR +       LA   +   AL+G++ Q  R   ++ ++ G   + +ATDV
Sbjct: 247 TDGIIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++       +R    + R  
Sbjct: 307 AARGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVT 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
              +     P+ E + ++ A R 
Sbjct: 367 GQKIESMELPTSEQVSDKRAARF 389


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/419 (33%), Positives = 227/419 (54%), Gaps = 17/419 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L         +  P  
Sbjct: 18  AITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQ-------KVDPKV 70

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             L A+ + PTRELA+QV  E+  L AK   G  V    GG  + ++ R L++G  IVVG
Sbjct: 71  KKLQAIILLPTRELAIQVAEEMRRL-AKFMHGTKVLPIYGGQDIVKQIRSLKDGTQIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R K + + H+  VVLDEADEML++GF +D+E IL   P++R+ LMFSAT+ 
Sbjct: 130 TPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  +A+ +Q D V V +  +      +      V   ++   +  +L  +  K +IVF
Sbjct: 190 QAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPKLSIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAARGID+
Sbjct: 250 CNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R     ++ +
Sbjct: 310 GDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKTKIIPQ 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGFLRIH 424
             PS+  I E   +++L   + + +   D  KMV+++  K     +    +AA  L+++
Sbjct: 370 AIPSLNDITEIKVEKVLDQVMDILN-DNDLTKMVNIIEKKLIEEDYTSMDLAAALLKMN 427


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 280/569 (49%), Gaps = 50/569 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   +++Q A +   L  +DVL  AQTG+GKT AF L + S L          
Sbjct: 31  KALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNLDVSQ------ 84

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    E +     GV V    GG     +   L+ G H+VVGT
Sbjct: 85  KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 144

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +PK +++ +FSAT+  
Sbjct: 145 PGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPA 204

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++  Y +D   + + ++    ++   R ++V+   + +A+  IL     +  IVF 
Sbjct: 205 QIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV 264

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   A+SG+++Q +R   ++ +++G+  + +ATDVAARG+D+ 
Sbjct: 265 RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAARGLDVD 324

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR      +A    + E
Sbjct: 325 RISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPR--ERRLLTAIEKATRQPLTE 382

Query: 371 P-APSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKHD-PEKIAAGFL 421
              PS E +      R        L D   LD+     + +V   +  HD  E   A  L
Sbjct: 383 MRMPSAEDVNVTRLSRFDDAITAALADRERLDAF----RDIVGHYVNHHDVVESDVAAAL 438

Query: 422 RIHRAG----LCAPEEITPVSLVS-------GRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            I   G    L + +++ P  +         GRD      R  +   GS       + + 
Sbjct: 439 AIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDERGERRARPARGS----GNMATYR 494

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV- 525
           + VG + + E R ++  L    G +R+  G I ++PD + VE+ A    D +D L  TV 
Sbjct: 495 IDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAGLPQDRIDRLASTVI 554

Query: 526 -------KLDKGIQLKYLGGEKPDFRGYK 547
                  + D+G       G  P+ RG K
Sbjct: 555 NGRPIDIRPDRGGPRAAERGAAPERRGRK 583


>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 411

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 207/358 (57%), Gaps = 5/358 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  ++
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++    E+L + A
Sbjct: 322 DIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRA 379


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 197/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score =  227 bits (578), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 198/356 (55%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S L   N R+    A
Sbjct: 19  LDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH+VVGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R+ L+FSAT    I
Sbjct: 133 RIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK + +D  +V + S +   S I+ R   +    R +A+V +L++   ++ + FC T
Sbjct: 193 EKLAKTFMRDPRQVRVESLH-ADSQIEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R         L       +AL G+L Q+ER   L +  +    V +ATDVAARG+D+  L
Sbjct: 252 RQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVATDVAARGLDIAAL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           E VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ +       + W
Sbjct: 312 ETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDLQKQPLAW 367


>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 530

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 164/532 (30%), Positives = 255/532 (47%), Gaps = 39/532 (7%)

Query: 13  EALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +ALS +G+   T +Q     A+L  D    D++  AQTG+GKT AFGL L   L  +   
Sbjct: 15  QALSRKGFEEPTPIQIKTIPAVLTGD---SDIVAQAQTGTGKTAAFGLPLLEMLDPD--- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL +APTRELA+QV  E+  L     + VA   GG S+  + R L+ G  +V
Sbjct: 69  ---VRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQLRSLKKGVSVV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   LN+S ++ ++LDEADEML++GF DD+  I++ +  ++R ++FSAT
Sbjct: 126 VGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTATEKRTMLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  +AK Y  D   +   SE    +  D     VA+SD+  A+  I+        +
Sbjct: 186 MPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCRIIDMEPDFYGL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+      ++ L E  ++   L G++SQ  R   L   +     + +ATDVAARGI
Sbjct: 246 VFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTILVATDVAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  VI+ +L  +PE  +HR GRTGRAG++G+++  I  +  RR + + + A   + 
Sbjct: 306 DVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQFISKHARTDIR 365

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLRI 423
               P V  + +    RI  +   L  I   E +     M   LL +  P +  A  L+ 
Sbjct: 366 KARLPKVADVIDMKKGRIRAE---LQEIMTTEPELEFMGMAQELLDQSKPRETLAALLQ- 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                   EE+             D S   ++G     +  G S   ++ G K     + 
Sbjct: 422 ----YMFQEEL-------------DASNYKEIGDAFVVDKTGKSRLFVTQGRKDGLTPKR 464

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           L+  L     I  + I  I++     FV +     + +       KG +L +
Sbjct: 465 LLTFLGDKCNIPPKKIWDIQIMETFAFVSLPFQDAERVLAMFNKGKGTELAF 516


>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
 gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 182/566 (32%), Positives = 276/566 (48%), Gaps = 63/566 (11%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +ALSE GY   + +Q   +   L   D+L  AQTG+GKT AF L L   L LA  +    
Sbjct: 57  DALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLAVKN---- 112

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              P  L +APTRELA+QV    +  YAK   G  V    GG S+  + R L  GAH++V
Sbjct: 113 ---PQVLVLAPTRELAIQVAEAFQR-YAKNLPGFHVLPVYGGQSMVVQLRQLARGAHVIV 168

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI  K LN+  L  +VLDEADEML +GF DD+E+IL  +P +R+  +FSAT+
Sbjct: 169 GTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTALFSATM 228

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AI 248
             AI  +A  Y ++   V I +     S    R   ++++ + +A+  IL      + AI
Sbjct: 229 PDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEEDFDAAI 288

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +       L    +   AL+G+++QQ R   ++ ++ G+  + +ATDVAARG+
Sbjct: 289 IFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDVAARGL 348

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANV 365
           D+  +  VI+ ++  + E  +HR GRTGRAGR G ++ FV P+ M+  +  ER  R+   
Sbjct: 349 DVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIERATRQPIE 408

Query: 366 SVVWEPAPSVEAIRERDAQRILQD----------PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++     PS EA+ ++      Q             F D + G E      L   HD   
Sbjct: 409 ALQL---PSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAEL---HD--- 459

Query: 416 IAA--GFLRIHRAGLCAPEEITP---------------VSLVSGRDRFRDDSRAFKVGGG 458
           IAA   FL      L  PE   P                +    RD+  +  R F  G  
Sbjct: 460 IAAALAFLAQRERPLQLPESKGPDIARLPEPRREPGAERAPRENRDKILERRREFSEGNL 519

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA--- 515
            R        + + VG  Q+A  + ++  +   +GI  + IG I +  D + VE+ +   
Sbjct: 520 QR--------YRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALP 571

Query: 516 -DGVDLLRRTVKLDKGIQLKYLGGEK 540
            D +D+LRR       + ++ L  E+
Sbjct: 572 HDVLDILRRVRVRQHQLNIRPLDAEE 597


>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 160/541 (29%), Positives = 277/541 (51%), Gaps = 44/541 (8%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P       AL + G+   T +QE  +   +   D++  AQTG+GKT AFG+ +  
Sbjct: 4   LFNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPM-- 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
             + + D  +       L + PTREL  QV +E+ + +     + V   +GG S  ++ +
Sbjct: 62  --VEKTD--TSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L    HI+V TPGR+ DHI    +++SH+  + LDEADEML +GF+DDIE IL ++P+ 
Sbjct: 118 ELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPET 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  +AKNYQK+   + I +++     I     LV   ++ + +  +L
Sbjct: 178 RQTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +     AI+F +T+A   R T+ L +  F   AL G+L Q +R+  +   R  +  + +
Sbjct: 238 DFENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358
           ATDVAARG+D+ D+E++++ +L    E  +HR GRTGRAG+KG +  FV P  ++RR   
Sbjct: 298 ATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTP--LKRRMLD 355

Query: 359 L---FREANVSVVWEPA------PSVEAIRERDAQRILQD-PLFLDSI------QGDEKK 402
           +   + +A++  +  P         ++  + +    +  + P  L++I      +G + +
Sbjct: 356 MLAHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQ 415

Query: 403 MVDVLLAKHDPEKIAAGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           +++ LL    P K     + I   +A   + +E        G D+ R DSR+ +    +R
Sbjct: 416 LLNYLLDSMLPTKKTYETIEIIPEKASRRSQDE-------RGNDKGRKDSRSSRDASPAR 468

Query: 461 DNFKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
               GS     F+L++G         L   + +  GI  ++IG IR   + T   +  D 
Sbjct: 469 ----GSGQYVDFTLNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDS 524

Query: 518 V 518
           V
Sbjct: 525 V 525


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 224/398 (56%), Gaps = 20/398 (5%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK F      P+V+ +A++E G+   T +Q+  +   +   D++  AQTG+GKT AFG+ 
Sbjct: 1   MKTFAEFGLEPKVL-QAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L + +    +R       +AL + PTRELA+QV  E+  L    G+      GG  + R+
Sbjct: 60  LINKISINEERI------VALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P
Sbjct: 114 IRALKKKPQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ L+FSAT+ P I  LA+ + K+   V + S+      I      V    +  A+  
Sbjct: 174 EERQTLLFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + AI+F  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V
Sbjct: 234 LLDMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR- 355
            +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAG++G +  FV P+ +    
Sbjct: 294 LVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLH 353

Query: 356 -AERLFREANVSVVWEPAPSV-EAIRERD---AQRILQ 388
             E++ R+    +  +P PS+ EAI  +    A+R+L+
Sbjct: 354 FIEKVTRQ---RISKKPLPSLAEAIEGKQRLTAERVLE 388


>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 715

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 214/376 (56%), Gaps = 8/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+   G+   + +Q   +   L   DVL  AQTG+GKT AF L + S + AE 
Sbjct: 86  LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAE- 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   P AL +APTRELA+QV    +    +    + V    GG +   +   L+ G
Sbjct: 145 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 199

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+++++ +
Sbjct: 200 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVAL 259

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y  D   + + SE R +++I  R + VA  ++ +A+  IL     
Sbjct: 260 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 319

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+       + L    F   A++G+++QQ+R   ++ ++DGR  + +ATDVA
Sbjct: 320 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 379

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 380 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 439

Query: 365 VSVVWEPAPSVEAIRE 380
             +     P+V+ + E
Sbjct: 440 APLQEMELPTVDEVNE 455


>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
 gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
          Length = 457

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/355 (36%), Positives = 200/355 (56%), Gaps = 5/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           +P  +  A+ E GY   T +Q   +   L  +DVL +AQTG+GKT AF L + + L    
Sbjct: 9   LPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIARLRHYA 68

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
               SPA  P+  L + PTRELA Q+   ++  Y K   +   C+ GGV++  ++ DL  
Sbjct: 69  THSVSPAMHPVRCLILTPTRELADQIAASVQS-YTKYLPLRHTCVFGGVNMDPQKADLMR 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL DH+  K + ++ ++ +VLDEAD MLD+GF  DI  IL   PK R+ L
Sbjct: 128 GMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQLPKTRQTL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT SP I  LA  +Q+D V + +A +N   + ++     V    +   +  ++    
Sbjct: 188 LFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLARLINERA 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               IVFC T+    R  + L         A+ G+ +QQ R + L   +DG+ R+ +ATD
Sbjct: 248 MSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGKLRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           VAARG+D+ DL  V++ +L ++PE+ +HR GRTGRAG+ G+++ ++    Q+  E
Sbjct: 308 VAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQKLLE 362


>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
 gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
          Length = 459

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R     
Sbjct: 18  TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 74

Query: 74  APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 75  ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT    
Sbjct: 132 GRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+   +    + + S +   S   +   +     RD A+ N+L  H  ++A+VFC+
Sbjct: 192 IEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLLLTHQPESAVVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    F V+ + G+L Q+ER  AL    +    + +ATDVAARG+D+ +
Sbjct: 252 TKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+     + VV    
Sbjct: 312 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 371

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 372 PA------KSNQQPYQAKMVTINIDGGKKQKV 397


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 203/346 (58%), Gaps = 2/346 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I  AL E+GY   T +QEA +   L   D+L +AQTG+GKT AF L +L       N   
Sbjct: 13  IVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANASA 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ +  +       +   V  GGV++ ++   L++G  IV
Sbjct: 73  SPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDKQTAQLRSGCEIV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GRL DH++ K + ++ ++ VVLDEAD MLD+GF DDI  I+   P+ R+ L+FSAT
Sbjct: 133 VATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQMLPRPRQTLLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +PAI  LA+++      V +A++N  +++++   + V    + + +  ++   G +  I
Sbjct: 193 FAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDLLERLIVDLGMQQVI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ S  +  + LA     V A+ G+ SQQ R + L   + G  RV +ATDVAARG+
Sbjct: 253 VFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLRVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           D+ +L  V++ E+    E+ +HR GRTGRAG  G+++ ++ ++ Q+
Sbjct: 313 DIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQK 358


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 184/584 (31%), Positives = 291/584 (49%), Gaps = 52/584 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+++ GY + + +Q   +   L+ +DV+  AQTG+GKT AF L L S++     R  
Sbjct: 25  VARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSSIAG---RER 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
           P S PLAL +APTRELA+QV   L       G    + I GG S   +   L+ GAH+VV
Sbjct: 82  PTS-PLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKRGAHVVV 140

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI+   L++SH++ +VLDEADEML +GF++DIE I   +   R++ +FSAT+
Sbjct: 141 GTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVALFSATM 200

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +I  +   Y  D   V I ++    ++I  R + V  S + +A+  IL        I+
Sbjct: 201 PASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVMHSHKLDALTRILEVEKYDGIIM 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+         L    F   A++G++ Q  R   ++ +R G   + +ATDVAARG+D
Sbjct: 261 FVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR--EANVS 366
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++ FV P     R  RL +  E    
Sbjct: 321 VERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTP-----RENRLLKAIEKATR 375

Query: 367 VVWEP--APSVEAIRERDAQRILQDPL--FLDSIQGDE-KKMVDVLLAKHD--PEKIAAG 419
              EP   P+VE +     Q+  QD +   L+S    E + +++  +  H+   E +AA 
Sbjct: 376 QKVEPLVMPTVEELTVTRTQK-FQDRISHTLNSQDLSELRPVIEEYVNTHNVPAEDVAAA 434

Query: 420 F--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              L +  A L A     P +  S  +R R                 G + + L+VG   
Sbjct: 435 LASLVLDGATLTAEPLPEPQARASRNERAR--------------TADGMTTYRLAVGRMD 480

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLLRRTVKLDKGIQLKYL 536
           K     ++  +    GI+ Q IG I ++ + + V++  D    +L+R  K       K  
Sbjct: 481 KVNPGAIVGAIANEGGISSQQIGNISIRSNHSLVDLPQDLDASVLKRLSK------TKVA 534

Query: 537 GGE---KPDFRGYKSSGFKSKNSQDGA--TKRFKR--FKGASKN 573
           G     +PD RG     FK +++  GA   ++F +  F+G   N
Sbjct: 535 GRHIDIRPD-RGRPGRPFKKRSNDKGAGEGRKFGKDGFRGRKGN 577


>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 471

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 137/392 (34%), Positives = 213/392 (54%), Gaps = 13/392 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R     
Sbjct: 30  TLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ--- 86

Query: 74  APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 87  ---SLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D++PK+R+ L+FSAT    
Sbjct: 144 GRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPKQRQTLLFSATFPEK 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+   +    + + S +   S   +   +     RD A+ N+L  H  ++A+VFC+
Sbjct: 204 IEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANLLLTHQPESAVVFCN 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    F V+ + G+L Q+ER  AL    +    + +ATDVAARG+D+ +
Sbjct: 264 TKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAARGLDVDN 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+     + VV    
Sbjct: 324 LDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATL 383

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           P+      +  Q+  Q  +   +I G +K+ V
Sbjct: 384 PA------KSNQQPYQAKMVTINIDGGKKQKV 409


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +   L  E
Sbjct: 12  NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                  S   AL +APTRELA+QV  + E L   +  V +AV  GG    R+ + L++G
Sbjct: 72  ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K++M +
Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L     
Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 174/571 (30%), Positives = 291/571 (50%), Gaps = 31/571 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL++RG  +L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  +
Sbjct: 33  VSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQHIIDAH 92

Query: 67  DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
              +P    +P AL +APTRELA QV RE         ++  VC+ GGVS+  ++R L+ 
Sbjct: 93  KESAPRHGRSPRALVLAPTRELAKQVEREF---MESAPMLSTVCVYGGVSISMQQRQLER 149

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I VGTPGR+ D I    L + ++  +VLDEAD+ML +GF +D+E IL   PK R+ +
Sbjct: 150 GVDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQLPKNRQSM 209

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+   +  L+  Y    + +N+   ++++    I   A+ +  + + + + +++  
Sbjct: 210 LFSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAKRSILSDLITV 269

Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           H      IVF  T+         +  +L    AL G++SQ +R   L   R+G   V +A
Sbjct: 270 HAKGGKTIVFTQTKRDADDVAMAMG-NLVACGALHGDISQLQREKTLNAFREGNITVLVA 328

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P+++LVIH E+ ++ E  +HR+GRTGRAG+ G ++ +   N Q R  R  
Sbjct: 329 TDVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMF-TNQQMRTMRTI 387

Query: 361 REANVSVVWE--PAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIA 417
            E+NV   ++   AP V+ + +    ++      +D S+  + +   + LL +  P+  A
Sbjct: 388 -ESNVKCRFQMIGAPHVKDVMQASFDQVRGALKNVDESLAAEFRPTAESLLEEKGPDAFA 446

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A       A L    ++ P   +   +      R  + GG    N +G S   LS  S+ 
Sbjct: 447 AAL-----AHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGGRPALNARGVSGV-LSGLSRS 500

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQL 533
            A++   + ++      +R+  GA+   PD    EV A    DG D+     KL   I  
Sbjct: 501 AADSVGKICIID-----DRRVNGAVFDLPDDVAKEVLALPNQDG-DVFDVPTKLPPIISE 554

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
           +  GG+     G    G  S+   D    RF
Sbjct: 555 ERRGGQSSGMFGRFGGGSDSRGGMDRGNDRF 585


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +   L  E
Sbjct: 12  NFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                  S   AL +APTRELA+QV  + E L   +  V +AV  GG    R+ + L++G
Sbjct: 72  ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K++M +
Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L     
Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 195/340 (57%), Gaps = 10/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY N T +Q + +   L  +DVL  AQTG+GKT AF L + S +         A+
Sbjct: 41  ALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIDLS------AT 94

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P AL +APTRELA+QV  E    YA+   G  V    GG     + R+L+ G H+VVGT
Sbjct: 95  DPQALVLAPTRELAIQVA-EAFHTYAEFMPGFHVLPIYGGQDYGVQIRNLKRGVHVVVGT 153

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   LN+ +LK +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+  
Sbjct: 154 PGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATMPQ 213

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ Y K    + I ++      I  R  +V    + +A+  IL        I+F 
Sbjct: 214 PIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHHKLDALTRILEVEPFDGIIIFV 273

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   AL+G++ Q  R   ++ ++DG   + IATDVAARG+D+ 
Sbjct: 274 RTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAARGLDVE 333

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            +  VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+
Sbjct: 334 RISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPR 373


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 136/419 (32%), Positives = 224/419 (53%), Gaps = 13/419 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q A +   L  +DV+  AQTG+GKT AFG+ L        +R S  
Sbjct: 31  QAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPLV-------ERVSTE 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ + PTRELA+QV  E+  +     V      GG S+  + R L+ G  IV+GTP
Sbjct: 84  PRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQIRALKQGVQIVIGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++  ++ VVLDEADEMLD+GF DDIE IL  +P  R+ ++FSAT    
Sbjct: 144 GRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPSDRQTMLFSATFPNE 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA  Y +D   + +         ID     V   ++ +++  I+     +  I+FC 
Sbjct: 204 VKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRIVDSEDIQLGIIFCR 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    L G+LSQ +R   ++  R     + +ATDVAARG+D+ D
Sbjct: 264 TKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELLVATDVAARGLDVDD 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  +PE+ +HR GRTGRAG++G+++ ++     +  +++ RE    +     
Sbjct: 324 VTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQIEREIKQKITVREV 383

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           PS+E + ER A+  +     +D I+       + ++  L+ +HDP  IA+  L++  +G
Sbjct: 384 PSLEDVAERQAE--MWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDIASALLKLASSG 440


>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
          Length = 408

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 207/358 (57%), Gaps = 5/358 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + +   
Sbjct: 22  ILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQRLLPQASTSA 81

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  ++
Sbjct: 82  SPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRGVEVL 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT
Sbjct: 142 IATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V ++R    K  I
Sbjct: 202 FSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKLIRDRALKQVI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+++   SR  + +        A+ G+ SQ ER  AL   + G     +ATDVAARG+
Sbjct: 262 VFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++    E+L + A
Sbjct: 322 DIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRA 379


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 160/526 (30%), Positives = 267/526 (50%), Gaps = 35/526 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-P 71
           +A+ + G+   + +Q   +   L   D++  AQTG+GKT AFG A+ +     N  FS  
Sbjct: 17  KAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIIN-----NADFSGK 71

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             +P AL +APTRELA+QV  EL  L     + V    GG  + R+ R L+NG  IVVGT
Sbjct: 72  KKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D IR K L ++ +  +VLDEADEML++GF DD+E I+ S    R+ L+FSAT+ P
Sbjct: 132 PGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPP 191

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I  LA+NY K D   + I   +   S I+     +   DR   +  +L +     AI+F
Sbjct: 192 QIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V    + +    + V  + G++SQ  R   L+  ++G     +ATDVAARGID+
Sbjct: 252 CKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ +L  + E+ +HR GRTGRA R+G++  ++        +++ +     ++ +
Sbjct: 312 ESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQKHTKSKIIRK 371

Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426
             P+V+ I +     I+ +    ++    D +K + +   L   +    +AA  L+I   
Sbjct: 372 AVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVDVAAALLKI--- 428

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +   E     +  S      D++R F                 +SVG +     + L+ 
Sbjct: 429 -VFDKESSFDYTSNSIEAPVMDETRLF-----------------MSVGRRDGITPKSLVN 470

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRRTV--KLDK 529
            L  ++ I+ + +G I ++ +  F  V AD V +++++++  KL+K
Sbjct: 471 FLKETARISPKQVGDIDIKENFCFANVDADAVNNIMKKSMGKKLNK 516


>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 409

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/337 (36%), Positives = 190/337 (56%), Gaps = 2/337 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +N+       
Sbjct: 16  LAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLIDNESQDAPKD 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELAVQV +        T + V +  GGVS+  ++ + + G  +++ TPGR
Sbjct: 76  VRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGIDVLIATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R   LN+  L  +V DEAD MLD+GF D+I+ +L   P +R+ L+FSAT+  +I 
Sbjct: 136 LLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
             +KN  +D   + +A  N   + ++ R   +  SDR    V +++R    +  ++F  T
Sbjct: 196 GFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAARG+D+ DL
Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 351


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 270/538 (50%), Gaps = 37/538 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ + G+   + +Q   +   L  KD++  AQTG+GKT A+G+ +  ++   
Sbjct: 32  NVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQSI--- 88

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122
                P    + A+ + PTRELA+QV  E+  L  Y  +  V+ V  GG  + R+ + L+
Sbjct: 89  ----DPKLKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPV-YGGQEIVRQIKSLK 143

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGR+ DH+R K +    +K V+LDEADEMLD+GFR+D+E IL   P++R+ 
Sbjct: 144 TGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEERQT 203

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+  AI  +A+ +Q DA  + +  +     +I+     V   ++D  +  ++  +
Sbjct: 204 VMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSKNKDEILSRLIDIY 263

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K ++VFC+T+  V      L    +    + G++ Q +R   +   R G+  + IATD
Sbjct: 264 NPKLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEILIATD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+++V + +L  + E  +HR GRTGRAGR G++   +      + + + R 
Sbjct: 324 VAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKDIERY 383

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI--AA 418
               ++    PS++ ++      + +         G  D + +V+  +   D   I  AA
Sbjct: 384 CKTKIMARQIPSLDDVKNTRIDNLFEQVRKTLEAGGLADMRAIVEEKINDEDYTSIDLAA 443

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGSK 476
             L+                +V G D  R+D     V     D   GS    L  ++G K
Sbjct: 444 ALLK----------------MVLGDDHDREDD-VLPVHFDDNDG-NGSKMVRLFINIGKK 485

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            K +   ++  +   SG+  + +G+I +    TFVEV     D++ +   +   +Q+K
Sbjct: 486 DKVKPSNILGAIAGESGMPGKLVGSIDMYDAYTFVEVPRKYADIVLKA--MSNNVQIK 541


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 9/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   T +QEA +   L+ +DV+  AQTG+GKT AFGL +        ++  PA+  L  
Sbjct: 20  GFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML-------EKIDPANHQLQG 72

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPGR+ D
Sbjct: 73  LVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLD 132

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI ++ 
Sbjct: 133 HINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEERQTLLFSATMPPAIKSIG 192

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + K+   V I ++      ID   V     ++ + +  +L     +  IVF  T+  V
Sbjct: 193 VKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRTKRRV 252

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    ++   + G+LSQQ+R + L+  + G   + +ATDVAARG+D+  +  V 
Sbjct: 253 DELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILVATDVAARGLDISGVTHVY 312

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           + ++  +PE+ +HR GRTGRAG+ G+SV FV P  M
Sbjct: 313 NYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEM 348


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +   L  E
Sbjct: 12  NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                  S   AL +APTRELA+QV  + E L   +  V +AV  GG    R+ + L++G
Sbjct: 72  ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K++M +
Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L     
Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 168/538 (31%), Positives = 271/538 (50%), Gaps = 47/538 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   + +QEA +   L  +DV+  AQTG+GKT AF L   S L    D    A 
Sbjct: 62  AVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETTDVNGRAD 121

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELA+QV    +  YAK    V V    GG     +   L+ GA +VVGT
Sbjct: 122 TPQVLVLAPTRELALQVADAFDS-YAKHLDDVSVLAVYGGSPYGPQLAGLRRGAQVVVGT 180

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S L+ +VLDEADEML +GF ++++ IL S+P  ++  +FSAT+ P
Sbjct: 181 PGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQTALFSATMPP 240

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  ++  Y      V +A ++   + I  R + V    +  A+  IL        I F 
Sbjct: 241 AIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHDGVIAFV 300

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TRA      + L    F+ VA+SG+++Q++R   ++ ++ GR  + +ATDVAARG+D+ 
Sbjct: 301 RTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVE 360

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR+G +V F+ P+   + ++ ER  R+    + 
Sbjct: 361 RISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQQVEEMA 420

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKM------VDVLLAKH--DPEK 415
                 V A R+R          F D I     +  E+++      V   + +H  +P +
Sbjct: 421 VPSVADVNAARKR---------RFADGITRTLERASEEELAVFGEIVAAYVDEHQAEPSR 471

Query: 416 IAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFR---------------DDSRAFKVGGG 458
           +AA    + + G  L A E+  P     GR                    D R  +  G 
Sbjct: 472 VAAALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSR--GP 529

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +R+   G++ + ++VG + +     ++  L    G+   +IGAI ++ + + VE+ AD
Sbjct: 530 AREPAAGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPAD 587


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 194/351 (55%), Gaps = 15/351 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+SE GY   T +Q   + P L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLRKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    +     T +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-----NILRY- 241
           T++P I  +   +  +  RV +A ++     I    V    S RD A        +LR  
Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREMLRAL 246

Query: 242 -----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 G +NAI+FC+ +  V    K L +H +    + G+L Q +R+  L   RDG  +
Sbjct: 247 IEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRDGTLK 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGRKG ++ +
Sbjct: 307 FLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLML 357


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 190/337 (56%), Gaps = 2/337 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +N        
Sbjct: 16  LAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVLQQLLLDNQSQDAPKD 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELAVQV +        T + + +  GGVS+  ++ + + G  +++ TPGR
Sbjct: 76  IRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQAEFKAGIDVLIATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R   LN+ HL  +V DEAD MLD+GF D+I+ +L   P +R+ L+FSAT+  +I 
Sbjct: 136 LLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLFSATLDDSIF 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
             +KN  ++   + +A  N   + ++ R   +  SDR    V +++R    +  ++F  T
Sbjct: 196 GFSKNLLREPKLIEVAKRNTTAAQVEQRVYAID-SDRKTEFVSHLVRSKNWQQVLIFSRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAARG+D+ DL
Sbjct: 255 KQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQ 351


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 206/341 (60%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+   GY   +++Q A +   L+ +DV+  AQTG+GKT AF L + S L    D +   
Sbjct: 40  EAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLSNL----DVYQ-- 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +AP AL +APTRELA+QV    E  YA    GV +    GG     +   L+ G H+VVG
Sbjct: 94  NAPQALVLAPTRELALQVCEAFER-YASNLDGVRILPVYGGQGYGPQLTALRRGVHVVVG 152

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L++S L+ +VLDEADEML++GF +D+E IL  +P+ +++ +FSAT+ 
Sbjct: 153 TPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPEDKQVALFSATMP 212

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+K Y +DA  +++ ++ + +++I  R ++V+   + +A+  IL     +  IVF
Sbjct: 213 AQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRILEVENFEGMIVF 272

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T++      + L    F   A++G+++Q +R   +  ++DG   + +ATDVAARG+D+
Sbjct: 273 TRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILVATDVAARGLDV 332

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             +  V++ +L ++ E  +HR GRTGRAGR G ++ FV P+
Sbjct: 333 ERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPR 373


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 167/556 (30%), Positives = 283/556 (50%), Gaps = 27/556 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   P+ 
Sbjct: 104 ALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNGPSR 163

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL +APTRELA+QV  E    YAK      V    GG +   +   L+ GA +VVGT
Sbjct: 164 KTQALVLAPTRELALQVA-EAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVVGT 222

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P  R++ +FSAT+  
Sbjct: 223 PGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATMPS 282

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I F 
Sbjct: 283 QIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRILEVEEFDGVIAFV 342

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D+ 
Sbjct: 343 RTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLDVE 402

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ F+ P+   + R  E+  R+    + 
Sbjct: 403 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQMH 462

Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFL 421
              A +V  +R  + A+RI +      ++  ++      L++ ++ E      +IAA   
Sbjct: 463 LPTAETVNTLRLGKFAERITE------TLASEDVAPFRDLISSYEEEHNVPASEIAAALA 516

Query: 422 RIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            + + G     +E+        R+R +D    F   G +R   +G++ + ++VG +Q+  
Sbjct: 517 IMAQGGQPLLVKELPAAPEFQKRERSKD---GFGSRGPTRTLTEGNATYRIAVGRRQRVM 573

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536
              ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+  
Sbjct: 574 PGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELD 633

Query: 537 GGEKPDFRGYKSSGFK 552
            G KP     +  G++
Sbjct: 634 NGRKPSGGAGERGGYQ 649


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|220903642|ref|YP_002478954.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867941|gb|ACL48276.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 562

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 210/376 (55%), Gaps = 7/376 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E++P+ +  A +  G+  L  VQ   L   L  +D++V ++TGSGKT  + L +   L 
Sbjct: 46  LEDMPEDMRTACARAGWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLS 105

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+        AP AL +APTRELAVQV RE   L+  TG+V     GGV   ++   L+N
Sbjct: 106 AD------LKAPQALVLAPTRELAVQVEREAAVLFEGTGIVTVAVYGGVGYKKQMDALRN 159

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RM 182
           GA ++VGTPGR+ DH+  + L++  L+ +V DEAD ML +GF  D++ I    P++R   
Sbjct: 160 GAQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIHT 219

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT  P +  L+  +  +   ++++ +    +++ +    V   D+D A+V +L   
Sbjct: 220 CLFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETE 279

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +AI+FC+T+++V     VL    +    LS +LSQ  R   L+ +R G+ +  +ATD
Sbjct: 280 NPASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQYLVATD 339

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+P+L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ + 
Sbjct: 340 VAARGIDIPELSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAKH 399

Query: 363 ANVSVVWEPAPSVEAI 378
             + ++  P P+ E +
Sbjct: 400 YKIGLIPLPLPTDEDV 415


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 199/347 (57%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +   L  E
Sbjct: 12  NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQNLSPE 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                  S   AL +APTRELA+QV  + E L   +  V +AV  GG    R+ + L++G
Sbjct: 72  ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K++M +
Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L     
Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 223/406 (54%), Gaps = 15/406 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S       +    
Sbjct: 38  KAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLHQVK---- 93

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 94  --PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P +R++ +FSAT+ P
Sbjct: 152 PGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQRQVALFSATMPP 211

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 212 AIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFA 271

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+     + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+ 
Sbjct: 272 RTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVE 331

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R  ER  R+    + 
Sbjct: 332 RISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSIERATRQPIEEMQ 391

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 392 L---PSVDAVNDTRVARFMSR--ITETLAGGQIDMYRDLLQRYEAE 432


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 199/338 (58%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L       S    
Sbjct: 72  LADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQKT 125

Query: 75  PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P AL +APTRELA+QV    +   A    + V    GG     +   L+ G  +VVGTPG
Sbjct: 126 PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVVVGTPG 185

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   L+ S L+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+ P I
Sbjct: 186 RVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEI 245

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G++  I+F  T
Sbjct: 246 RRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGSEGVIIFART 305

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+  +
Sbjct: 306 KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERI 365

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            LVI+ ++  + E  +HR GRTGRAGR G +V FV P+
Sbjct: 366 GLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 403


>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
          Length = 779

 Score =  226 bits (577), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 221/401 (55%), Gaps = 24/401 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQ--------------EAILNPDLREKDVLVSAQTGSGKTV 52
           +P+ +   L +RG  +L  +Q               A+L P L  +D++  A+TG+GKT+
Sbjct: 118 LPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAKTGTGKTL 177

Query: 53  AFGLALASTLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109
           AFG+ +   L+ E+D  S      P  L +APTRELA QV +E++    K   +  VC+ 
Sbjct: 178 AFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVY 234

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGVS + ++  L  G  +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+
Sbjct: 235 GGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDV 294

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVA 227
           E IL   P +R+ ++FSAT+   +  L++ Y  + + +++  +  +     I   A+ + 
Sbjct: 295 ETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLT 354

Query: 228 LSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            + +   + +++  Y      IVF  T+      +  L   +    AL G++SQ +R   
Sbjct: 355 STSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASE-ALHGDISQHQRERT 413

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R G+  V +ATDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ 
Sbjct: 414 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAIL 473

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +   + +R    L R+      +   P++E + E  A+ ++
Sbjct: 474 MFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVI 514


>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 560

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 166/550 (30%), Positives = 281/550 (51%), Gaps = 34/550 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +     
Sbjct: 15  PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVSK- 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
                  P AL +APTRELA+QV    E  YAK   GV V    GG  +  + R ++NGA
Sbjct: 73  -----REPQALILAPTRELALQVATAFET-YAKQMPGVNVVAVYGGAPMGPQLRAIRNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++F
Sbjct: 127 QIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I ++A+ + ++   V I ++ +  + I+   ++V    +  A++ +L      
Sbjct: 187 SATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ +A+ +   +++     PL  ++ +    ++ D L +        +A+  L
Sbjct: 367 KVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTSDLGCSARALASALL 425

Query: 422 RIHRAG----LCAPEEITPVSLVSG-----RDRFRDDSRAFKVGGGSRDN------FKGS 466
           R    G    L A E   P  LV G      +R     R  +   G R+        +G 
Sbjct: 426 RKATNGQALDLAAVEREQP--LVPGVGAPRGERSERPDRGERPDRGDRERRAPLPLAEGR 483

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                ++G++    A+ L+  +    G+ R +IG I+V+   + VE+  DG++ L   +K
Sbjct: 484 VRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLK 543

Query: 527 LDK--GIQLK 534
             +  G QLK
Sbjct: 544 DTRVAGKQLK 553


>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
 gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
          Length = 656

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 270/568 (47%), Gaps = 54/568 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   +        P  
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELAVQV   L       +GV V    GG     + R L+ G  +VVGT
Sbjct: 74  KAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  
Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVF 250
           AI  + + + KD   V I S N    DI      V    R N A+V  L       AI+F
Sbjct: 194 AIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVRFLESEDFDAAIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G+++Q  R   L+ +RDGR  + IATDVAARG+D+
Sbjct: 254 VRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDILIATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++   
Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEV 373

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDV---LLAKHDPE------------ 414
             P+ E + ER   +      F   + Q  E   +DV   LL K  PE            
Sbjct: 374 MLPNAELLGERRLAK------FAAKVSQQLESSDLDVYRGLLTKLQPEDEFDIEALAAAL 427

Query: 415 -KIAAGFLRIHRAGLCAPEEI-TPVSLVSGR-DRFRDDSRAFKVGGGSRD---------- 461
            K+A G     R  +  PE +  P    S R DR  D     +    SRD          
Sbjct: 428 LKMAQG----ERPLILPPEPVRRPQREFSPREDRGNDRGDRRERRPESRDGAERPARRER 483

Query: 462 -NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      D
Sbjct: 484 RDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD 543

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
            +    RT  L+K + ++ LG  +P  R
Sbjct: 544 MLSHFTRTRILNKPLNMQLLGDAQPHER 571


>gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 553

 Score =  226 bits (576), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 163/524 (31%), Positives = 271/524 (51%), Gaps = 33/524 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A ++ G+     VQ+ ++ P L     D++  ++TGSGKT A+GL L   ++      + 
Sbjct: 15  ATTDLGFSEPMPVQQEVI-PYLSTHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130
            SAP  L + PTRELA+QV  +L  L   T V  +    GG S+  + R L  G HI+V 
Sbjct: 69  GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLCD IR K + +  +  VVLDEAD MLD+GF+ D++ IL + P++    +FSAT+S
Sbjct: 129 TPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  ++ Y+     I+F
Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TRA      + L    +   AL G+LSQ +R   +   R    ++ +ATDVAARG+D+
Sbjct: 249 CRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   + + A + +   
Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQHAGIRIESM 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVL---LAKHDPEKIAAGFL-- 421
           P PS + I ++    +     + DS     Q DE  +++ +   LA   PE+I    L  
Sbjct: 369 PLPSGQEICKKQLFALATRIEYADSNEHGTQYDE--LLNAIVQKLAWLPPEEIIRRVLTL 426

Query: 422 ---RIHRAGLCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFSLS 472
              RI R     P +++   L +   ++R      +  +A K    SR +    +   ++
Sbjct: 427 EADRIMRYYANTP-DLSAQELATEEPKYRTKGSPEEHRKAPK--KRSRTDLPPMTSLRIN 483

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +G + K     L+ ++ R+    + +IG I + P  ++ EV+++
Sbjct: 484 LGKRDKLYPNRLLELINRTLPY-KITIGKIDLSPSYSYFEVASE 526


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 239/434 (55%), Gaps = 24/434 (5%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK F      P+V+ +A++E G+   T +Q   +   L   D++  AQTG+GKT AFG+ 
Sbjct: 1   MKTFAEFGLEPKVL-QAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L + +    DR       +AL + PTRELA+QV  E+  L    G+      GG  + R+
Sbjct: 60  LINKIPVTEDRI------VALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    I++GTPGRL DHI  K + ++ ++ V+LDEADEMLD+GF +DI  IL   P
Sbjct: 114 IRALKKHPQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT+ P I  LA+ +  +   V++  +      ID   + V    +  A+  
Sbjct: 174 AERQTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     + AI+F  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V
Sbjct: 234 LIDMESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR- 355
            +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAG++G +  FV P+      
Sbjct: 294 LVATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLH 353

Query: 356 -AERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQGD---EKKMVDV-LLA 409
             E++ R     +  +P PS+ EAI  +  QR+  + L +D +Q +   E K + + LL 
Sbjct: 354 FIEKVTRH---KITRKPLPSIAEAIEGK--QRVTAERL-IDIVQNEGNQEYKGIAIHLLE 407

Query: 410 KHDPEKIAAGFLRI 423
           ++D   + A  +++
Sbjct: 408 QYDSVNLLAAAIKL 421


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPEAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 156/520 (30%), Positives = 267/520 (51%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  +VLDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  A+  I+   
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLSQ 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +  ++ +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 204/368 (55%), Gaps = 11/368 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L  +  R    
Sbjct: 16  ETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSNLNVKRFRVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAHI+VGT
Sbjct: 74  ----TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    +++  L  +VLDEAD MLD+GF D I+ I++++P KR+ L+FSAT   
Sbjct: 130 PGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQTLLFSATFPN 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVF 250
            I +LA     +   V + S   + + I+ R   L    +RD+A+  +L  H  ++++VF
Sbjct: 190 NIESLAAKVMVNPEMVKVES-THEKTTIEQRFYQLNTTEERDDALEALLLTHKPESSVVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V      L+   F VV L G++ Q+ER  AL M  +    + +ATDVAARG+D+
Sbjct: 249 CNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSVV 368
            +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+  + +  +S V
Sbjct: 309 DNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARIDEYMDIAISPV 368

Query: 369 WEPAPSVE 376
             P   +E
Sbjct: 369 QLPEKPIE 376


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 238/457 (52%), Gaps = 26/457 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E++ + G+   T +Q   +   L+  DV+  AQTG+GKT AFGL +         +  P+
Sbjct: 25  ESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPMLQ-------KIDPS 77

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              +  L IAPTRELA+Q   EL  L     + V    GG  ++R+ R L+    IVVGT
Sbjct: 78  KKGVQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIRQLKENPQIVVGT 137

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P+ R+ L+FSAT+  
Sbjct: 138 PGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPENRQTLLFSATMPD 197

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +   + KD   V I S     + ID   V     ++ + +  +L     +  IVF 
Sbjct: 198 DIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLLDVQTPELTIVFG 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    ++   + G+LSQQ+R + L+  ++    + +ATDVAARG+D+ 
Sbjct: 258 RTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDIS 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368
            +  V + ++  +PE+ +HR GRTGRAG++GMSV FV P  M   R  E L R+   S+ 
Sbjct: 318 GVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEELTRKRMTSL- 376

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLR-IHRA 426
             P    EA+  +    I      + +++    K+ V  LL +++PE++AA  L+ + + 
Sbjct: 377 -RPPTQTEALEGQTKTAIESIDEMMKTVEPRRFKEAVSYLLDEYEPEELAALLLKSMIKD 435

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               P +ITP   +  R R           G SR N+
Sbjct: 436 PTEIPVKITPERPLPSRKR-----------GNSRGNY 461


>gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
 gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 597

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 158/528 (29%), Positives = 265/528 (50%), Gaps = 47/528 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+ + G+   + VQE  + P L EK  D++  AQTG+GKT AFG  L   + A + +  
Sbjct: 15  KAIEDMGFETPSEVQEKSI-PILLEKETDLVSLAQTGTGKTAAFGFPLIQKIDANSKKTQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL ++PTREL +Q+  E++    Y K+  VVAV  GG S+  + R ++ GA I+
Sbjct: 74  ------ALILSPTRELCLQITNEIKNYSKYKKSLNVVAV-YGGASITDQARSIERGAQII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D IR +  NIS +   VLDEADEML++GF +DI+ IL  +PK+++  +FSAT
Sbjct: 127 VATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHTPKEKKTWLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +AK +  D + + + S+N+  S++ +   LV   +R +A+  +   +    ++
Sbjct: 187 MPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYYLVNHRNRYDALKRLADANPEIFSV 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGI
Sbjct: 247 IFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQMLVATDVAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+  VI+ +L    E   HRSGRTGRAG++G+S+ +I ++  R+   + +       
Sbjct: 307 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKIRTVEKIIQQKFE 366

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK------------MVDVLLAKHDPEKI 416
            +  P        D + I +  LF   +  D KK             ++  L     E++
Sbjct: 367 EKTIP--------DGKEICKTQLF--HLANDIKKTEINHDIDPYLPTINEALEDFTKEEL 416

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
              F  +         E  P            D  A  VGG    + +G++ + +++GSK
Sbjct: 417 IKKFFSVEFTRFFNYYEKAP------------DLSAESVGGRPPVS-EGNTRYFINIGSK 463

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
              +   L   L     + R  +  + V+   +F        DL+ +T
Sbjct: 464 DGFDWMSLKDFLKEQLDLGRDDVFKVDVKASFSFFNTDEQHTDLILKT 511


>gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 560

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 235/428 (54%), Gaps = 20/428 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  ++   D++  AQTG+GKT AFG+ L   +  E
Sbjct: 10  NLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMKMDPE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
           N +        A+ + PTRELA+QV  EL  L AK  +G+ +    GG  + ++ R L+ 
Sbjct: 70  NRKTQ------AMILCPTRELAIQVAEELRRL-AKYMSGIKILPVYGGQEIVKQIRSLKG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL   P++R+ +
Sbjct: 123 GVQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTV 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT+  AI  +A+ +QKD   V +  +      +      V   ++   +  +L  + 
Sbjct: 183 MFSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPRNKVEVMCRLLDLYS 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K ++ FC+T+  V    + L    +    L G+L Q++R   +   R+G   + +ATDV
Sbjct: 243 PKLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  +   +   +   + R  
Sbjct: 303 AARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQRFC 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE---KKMVDV----LLAK-HDPEK 415
              +V +P PS++ +    A++IL D   +    GD+   ++M D+    LLA+ +   +
Sbjct: 363 KTKIVPQPIPSLDDVTAIKAEKILDD---VQQHIGDDSNLERMTDIIEKRLLAEDYTSLE 419

Query: 416 IAAGFLRI 423
           +AA FL++
Sbjct: 420 LAAAFLKM 427


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +AL +  ++  + +Q   +   L  +D +  AQTG+GKT AF L +   L  E
Sbjct: 12  NFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQNLSPE 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                  S   AL +APTRELA+QV  + E L   +  V +AV  GG    R+ + L++G
Sbjct: 72  ------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLKQLRSG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K++M +
Sbjct: 126 AQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEKKQMAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L     
Sbjct: 186 FSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVLEVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPK 352


>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 528

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + S I +  I    V    +FV V
Sbjct: 472 FIVKKSKIKQSYIKNAEVYEGFSFVSV 498


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 242/460 (52%), Gaps = 21/460 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  G+   T +QE  +   L+  D++  A TG+GKT AFG+ +   L          
Sbjct: 15  QAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPMVEKLEKN------G 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL + PTRELAVQV  EL  +    G+      GG  + R+ R LQ    I+VGTP
Sbjct: 69  STVQALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQIRGLQKRPQIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHIR + + +  +  VVLDEADEML++GF +DIE IL  +P++R+ L+FSAT+   
Sbjct: 129 GRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQERQTLLFSATMPGP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ + +D  ++++ S+     + +   +++    + + +  +L       AIVF  
Sbjct: 189 IEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRLLDTQSPDLAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L +  +    + G+++Q  R + ++  +DG   + +ATDVAARG+D+  
Sbjct: 249 TKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDILVATDVAARGLDITG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V + ++  +PE+ +HR GRTGRAG  GM+V  +  N +    R       S +  P 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFV-SNREVGHLRTIEYGTKSRI--PR 365

Query: 373 PSVEAIRE--RDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRA 426
            S   ++E     QRI  + L L +++ ++    + + D LL +HD E I A  L++   
Sbjct: 366 LSTPTVKEAIEGQQRIAVEKL-LKTVESEDITHYQPLADELLNEHDAETILAAALKM--- 421

Query: 427 GLCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKG 465
            L    + TPV L     ++ +  ++ ++ G   R+  KG
Sbjct: 422 -LTKEPDTTPVKLTEEAPQWSKRQNKPYQGGHYRRNKHKG 460


>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
 gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 469

 Score =  226 bits (576), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 221/403 (54%), Gaps = 13/403 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P    +   L++ GY  +T +Q A L   L  +D++  A+TGSGKT AFGLAL   
Sbjct: 14  FSNLPLSPTMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120
           L  +  RF       A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   
Sbjct: 74  L--DPRRFDVQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDS 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAHIVVGTPGR+ DHI    L++S +  +VLDEAD MLD+GF DDI ++    PK R
Sbjct: 128 LIHGAHIVVGTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKDR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT  P I  L+  + ++   V + + +  ++ I  R   V   +R N +  +L 
Sbjct: 188 QTLLFSATYPPGIDKLSHRFLRNPQSVKLEATH-DNTTIRQRFYEVEEGERLNTVGRLLD 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+T+A      ++L    +Q +AL GEL Q+ER   L    +    V +A
Sbjct: 247 HFRPVSTLAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ E++ +PE  +HR GRTGRA ++G +  ++  +   R   L 
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           +       W+P   +  +R    +R+L   + L  + G ++K+
Sbjct: 367 QHHGGEFEWQP---LADLRPASNERLLPPMVTLQMLGGRKEKI 406


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 188/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +QEA +   L  KDV+  AQTG+GKT AFGL +   +   N +         L
Sbjct: 20  GFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPMLEKIDPTNHQLQ------GL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPGR+ DH
Sbjct: 74  VIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIRQLKDRPHIVVGTPGRMLDH 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  ++ +VLDEADEML++GF +DIE I+   P  R+ L+FSAT+ PAI  +  
Sbjct: 134 INRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDVRQTLLFSATMPPAIKNIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V I ++      ID   V     ++ + +  +L     +  IVF  T+  V 
Sbjct: 194 KFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    ++   + G+LSQQ+R + L+  + G+  + +ATDVAARG+D+  +  V +
Sbjct: 254 ELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 201/352 (57%), Gaps = 9/352 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  ALSE+GY + T +Q   +   L  KDV+ +AQTG+GKT  F L +   LL   N   
Sbjct: 41  ILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPLANASA 100

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ +   L+ G  I+
Sbjct: 101 SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEIL 160

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  P +R+ L+FSAT
Sbjct: 161 VATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSAT 220

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----A 244
            SP I  LA +Y K  V + +A  N  + ++      V    +  A+V++L+       +
Sbjct: 221 FSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVVHLLKQRAEQSQS 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF +++   SR  + L        A+ G+ +Q ER   L   + G     +ATDVA
Sbjct: 281 RQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKSGTIDALVATDVA 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQR 354
           ARG+D+PD+  VI+ +L  + E+ +HR GRTGRAG  G  +S++V P N +R
Sbjct: 341 ARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYV-PGNDER 391


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 153/455 (33%), Positives = 235/455 (51%), Gaps = 19/455 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +Q   +   L+ +DV+  AQTG+GKT AFGL +   +  +N       
Sbjct: 27  AVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHIDLDN------P 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  A+ I+PTRELA+Q   EL  L     V V V  GG  + R+   L+    I+VGTPG
Sbjct: 81  AIQAIVISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLKKHPQILVGTPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    +N+ H++ +VLDEADEML++GF DDIE I+  +P+KR+ L+FSAT+ P I
Sbjct: 141 RLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQTLLFSATMPPEI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +D   V I ++      +D   V     ++ + +  ++        IVF  T
Sbjct: 201 KRIGVQFMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRLIDVQDPDLTIVFGRT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAARG+D+  +
Sbjct: 261 KRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILVATDVAARGLDISGV 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M      E+L R   + +  +
Sbjct: 321 THVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPL--K 378

Query: 371 PAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           P    EA R + A  +   D L  D      ++  + LLA HD   + A  L        
Sbjct: 379 PPTEEEAFRGQVASAVNDIDDLIKDEATDKYRQSAEKLLATHDAVDLVAALLNDLTTDDA 438

Query: 430 A--PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +  P +ITP   +  R R    SR    G  SR+N
Sbjct: 439 SKVPVKITPERPLPRRHRHH-QSR----GHNSRNN 468


>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 553

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 211/369 (57%), Gaps = 10/369 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+ + G+   T VQ+ ++ P L E+  D++  AQTG+GKT AFG  +   + A+     
Sbjct: 15  KAVEKLGFETPTEVQDKVI-PILLEQNTDLVALAQTGTGKTAAFGFPMLQRIDAKQ---- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  L +APTREL +Q+  E+  +  A   + +    GG ++  +   ++ GA IVV
Sbjct: 70  --RTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQEQANKIRRGAQIVV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I  + ++IS ++  VLDEADEML++GF +DI+ IL  +PK +   +FSAT+
Sbjct: 128 ATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHTPKSKNSWLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P + T+AK + K  + + + ++N    +ID++  +VA  +R NA+  ++  +     +V
Sbjct: 188 PPEVNTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAARERYNALRAVVSMNTDLFGVV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+    +  + L +  ++  A+ G+LSQ +R   +Q  R  R ++ IATDVAARGID
Sbjct: 248 FCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQLLIATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL  VI+ +L    E   HRSGRTGRAG+ G S+  + ++ +R+ + +  +    +  
Sbjct: 308 VDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKIKLIENKLQTKLTE 367

Query: 370 EPAPSVEAI 378
              PS E +
Sbjct: 368 LEMPSPEEV 376


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score =  226 bits (576), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 176/557 (31%), Positives = 281/557 (50%), Gaps = 62/557 (11%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS+ GY + + +Q A +   L  KDV+  AQTG+GKT AF + + S L  + DR    
Sbjct: 28  KALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSRL--DVDR---- 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV        A   G+ V    GG +   +   L+ GA I+VGT
Sbjct: 82  KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGAQIIVGT 141

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S+L+ +VLDEADEML +GF+DD+E IL  +P+ +++ +FSAT+ P
Sbjct: 142 PGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPP 201

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  ++K Y  D V + + ++    S+I  R V VA   + +A+  IL     +  I+F 
Sbjct: 202 AIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFV 261

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    F   A++G++ Q +R   +  ++ G   + +ATDVAARG+D+ 
Sbjct: 262 RTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 321

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G + +FV P  +++ +  ER  R+    + 
Sbjct: 322 RISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQPLTEIQ 381

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
               P+VE +   +AQR+ +   F DSI          L       K+   + R H   L
Sbjct: 382 L---PTVEDV---NAQRVSK---FGDSITESLNSENLALF-----RKLIEDYEREHDVPL 427

Query: 429 CAPEEITPVSLVSGRD-------------------RFRDDSRAFKVGG--GSRDNFKGSS 467
               +I     V  RD                        +R F  GG  G R    G  
Sbjct: 428 A---DIAAALAVQSRDGESFLMAPEPPAPPRREREPRERPARRFDDGGPSGPRVGRDGQE 484

Query: 468 W--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLL 521
           +  + ++VG + K     ++  +    G+ R   G I ++PD + VE+ A    + V+ L
Sbjct: 485 FATYRIAVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPKETVEAL 544

Query: 522 RRT--------VKLDKG 530
           R T        ++LD+G
Sbjct: 545 RATRISGVLIQLQLDQG 561


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 134/344 (38%), Positives = 197/344 (57%), Gaps = 12/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+G    T +Q   L   L   DVL  A+TG+GKT+AF L +A  L  E  R +P  
Sbjct: 23  ALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL--EPSR-TPGR 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELA+QV  ELEW+     +V     GG     +   L+ GA +VV TPG
Sbjct: 80  PPRALVLAPTRELALQVAGELEWVAPHLRIVT--VYGGTGYGSQAAALKRGADVVVATPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D++    L+++ ++  VLDEADEML +GF + +E +L ++P +R+ LMFSAT+    
Sbjct: 138 RAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMFSATLPGWA 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             L   + K+   VN+     Q  ++ YR  A+  + S R +A+ ++L  HG + AIVF 
Sbjct: 198 KRLVGRHLKEPTVVNVV----QDEEVSYREIAIEASPSARMSALSDLLHAHGPERAIVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L        A+ G+L+Q +R  ++   R G+  V +ATDVAARG+D+P
Sbjct: 254 RTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVAARGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +++LV+H  L    E+  HRSGRTGRAGR G +V +   + +RR
Sbjct: 314 EVDLVVHLRLPERAESYQHRSGRTGRAGRSG-TVIIFHSSRERR 356


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 14/361 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ + A  
Sbjct: 19  LNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKINVAQV 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  AAQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGPQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLFSATYPS 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  + V +  +  + + I+ R        R   +V+ +R++   + +VFC
Sbjct: 191 GIERISARVQRSPLNVEV-DDGEEQTTIEQRFYETTRDQRPAVLVSAIRHYQPSSCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           +LELV++ EL+ +PE  +HR GRTGRAG  G ++    PQ M  RA  +       V W 
Sbjct: 310 ELELVVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQEMT-RAHAIEDYLQTKVKWA 368

Query: 371 P 371
           P
Sbjct: 369 P 369


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 142/343 (41%), Positives = 201/343 (58%), Gaps = 5/343 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +   ALS+ GY+  +++Q + +   L+ +DVL +AQTGSGKT AF L L    L    
Sbjct: 5   PSLAQAALSQ-GYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLTSR- 62

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGA 125
           + SP     AL + PTRELAVQVG  L  L       V VAV  GGVS++ +   L+ GA
Sbjct: 63  QGSPRQVQ-ALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I    L+IS +  +VLDEAD +LDLGF D++  +L   P  R+ L+F
Sbjct: 122 DIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT  PA+ +LA+      +R++IA       DI  RA+ V  S R   + ++L+ HG  
Sbjct: 182 SATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTMLLRHLLQTHGWD 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ++R +  R T  L     +  AL G+ SQ +R   L  ++ G+ +V +ATDVAA
Sbjct: 242 RVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+P L +V++ +L  +P +  HR GRTGRAG +G ++  I
Sbjct: 302 RGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFI 344


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 198/338 (58%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L       S    
Sbjct: 72  LADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQKT 125

Query: 75  PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P AL +APTRELA+QV    +   A    + V    GG     +   L+ G  +VVGTPG
Sbjct: 126 PQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVVVGTPG 185

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   L+ S L+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+ P I
Sbjct: 186 RVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSATMPPEI 245

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G +  I+F  T
Sbjct: 246 RRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFART 305

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+  +
Sbjct: 306 KAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVERI 365

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            LVI+ ++  + E  +HR GRTGRAGR G +V FV P+
Sbjct: 366 GLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 403


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 148/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +N+   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439


>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 594

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 267/516 (51%), Gaps = 16/516 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRF 69
           I + + + G+   + VQE ++   L E++ LV+ AQTG+GKT AFGL L   L       
Sbjct: 13  ILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLPLLQKL------D 66

Query: 70  SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +  +A   L ++PTREL +Q+G++L+ +   ++ + VA   GG  + ++ R+L  G H++
Sbjct: 67  TSLNAIQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRKQIRELDRGVHVL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCD I+ + + I  ++AVVLDEADEML++GF++D+ FILD +P +R   +FSAT
Sbjct: 127 VATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDETPAERNTYLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +AKNY ++   ++   +N+    + +    V   D    +  ++       AI
Sbjct: 187 MPREVERIAKNYLRNPQEISTGKKNQGADTVTHEYYQVLARDCYETLHRVIDCAPDMYAI 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+       + L +      AL G+LSQ +R + +   R  R +V +ATDVAARG+
Sbjct: 247 IFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLKVLVATDVAARGL 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L  VI+  L  + E+  HRSGRTGRAGR+G+SV +I    + +  R+         
Sbjct: 307 DVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKLRRIENILKKKFQ 366

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGFLRIHR 425
           ++  P  E +  R       D + +   +    K    L  K +    E++    +    
Sbjct: 367 YKEVPGGEEVC-RAQLSYYADKILMTEPKETLDKYRHELFEKFEELSKEELIQKMMSYEF 425

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARW 483
             L   ++   V+ ++  D  R D    +   G R N +  ++  FS++VG +     R 
Sbjct: 426 GKLL--KKYASVADLNLSDEERHDGGRREKRRGERKNEESVTFTTFSVNVGKEDGFTPRD 483

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           LM ++  ++      IG+IR+  + T  EV   G++
Sbjct: 484 LMTIINENAPRKGLEIGSIRIFGNNTKFEVDVRGIN 519


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
 gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
          Length = 606

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 201/379 (53%), Gaps = 7/379 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I + L E GY   T +Q   +   L  +D++  AQTG+GKT AF L L S +  E   
Sbjct: 18  QPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSKIDLE--- 74

Query: 69  FSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                AP  L +APTRELA+QVG    E+     G+ V    GG     + + L+ G H+
Sbjct: 75  ---LRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKRGVHV 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+R   L + +L+ +VLDEADEML +GF DD+E+IL+ +P   +  +FSA
Sbjct: 132 VVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTALFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+  AI  +A NY K    + +  + R    I  R  L     + +A+  IL        
Sbjct: 192 TMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYWLAKGHHKLDALTRILEAEETDGV 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T++  +  ++ L    F    L+G++ Q++R   +  ++ G   + IATDVAARG
Sbjct: 252 IIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIATDVAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  VI+ +L  + E  +HR GRTGRAGR G ++  +    QR    + R   + +
Sbjct: 312 LDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGIERAIKLKI 371

Query: 368 VWEPAPSVEAIRERDAQRI 386
                PS+  I +R  +R 
Sbjct: 372 ERMELPSINQINKRRTERF 390


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 198/352 (56%), Gaps = 7/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I + L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + AEN       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKINAEN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 578

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/378 (34%), Positives = 211/378 (55%), Gaps = 18/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP++  + L   G  + T VQ+  +   L  +DV+  AQTG+GKT+AF L +   +  + 
Sbjct: 11  IPELT-DVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQRIDIDK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+Q+  EL+ L A  G  V    GG  V  + R L N  H
Sbjct: 70  EQVQ------ALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNNSPH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+R + +N+  LK +VLDEAD+ML +GF  +++ I+D +P+ R+ ++FS
Sbjct: 124 IVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTMLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+NY K  V + I S N    +I    +      R  A+++++       
Sbjct: 184 ATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQRPYL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC T+    +  K L +  F+   L G+L+Q +R   ++  RD + ++ +ATDVAAR
Sbjct: 244 AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRR 355
           G+D+  +  V + ++ ++ E  +HR GRTGRAG++G ++ +           I +++   
Sbjct: 304 GLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIERSINAI 363

Query: 356 AERLFREANVSVVWEPAP 373
            ER   EA+ ++V   AP
Sbjct: 364 LERRTIEADGTIVKNTAP 381


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 173/559 (30%), Positives = 267/559 (47%), Gaps = 35/559 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY   T +Q   + P L  +DV+  AQTG+GKT AF L +        +R  P  A
Sbjct: 21  LAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPIL-------ERLDPDRA 73

Query: 75  PL-ALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTRELA+QV        A+T G+ +    GG     + R LQ GAH+VVGTP
Sbjct: 74  ETQALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQRGAHVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L +S L  +VLDEADEML +GF +D+E IL  +P+ +++ +FSAT+ PA
Sbjct: 134 GRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVALFSATMPPA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK Y  D V V   +  R  + +  R + V    + +A+  +L        I+F  
Sbjct: 194 IRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVENGDGMIIFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    F   AL+G+L Q +R   +  ++ G   + +ATDVAARG+D+  
Sbjct: 254 TKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILVATDVAARGLDVDR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  + E+ +HR GRTGRAGR G +V  +    +R    + + +   V     
Sbjct: 314 ITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLSAIEKVSGRPVEEMSV 373

Query: 373 PSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAAGFLRI 423
           PS E +  + ++R        L  P F        +++V+   A H  D   +AA    +
Sbjct: 374 PSAEEVNTQRSERFAAAITESLGSPQFHPF-----RRLVEEYAAAHEVDMTDVAAALAVM 428

Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478
           +   +     P+   PV     R+R   D R  +             W  + L+VG + +
Sbjct: 429 NTDDKEFFLRPD--PPVKERPKRERTERDDRPRRDVQEQAGQEAPEGWRRYRLAVGKRHR 486

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLK 534
                ++  +    G+ R   G I +  +   VE+ AD      D L  T    K I L+
Sbjct: 487 IGPSAIVGAMANEGGLRRTDFGKITIGVEHAVVELPADLPDAVFDALADTRISGKRIDLR 546

Query: 535 YLGGEKPDF-RGYKSSGFK 552
              G  P   RG +S G++
Sbjct: 547 VDDGPPPARQRGPRSGGYQ 565


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 202/366 (55%), Gaps = 12/366 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q A L   L+ +D++  A+TGSGKT AFG+ L   L   N R+    A
Sbjct: 19  LAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GGV    +   L++GAH++VGTPG
Sbjct: 76  ---LVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGSLEHGAHVIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD MLD+GF D I  I++ +P +R+ L+FSAT    I
Sbjct: 133 RVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARRQTLLFSATYPAGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA  + +   RV + +    H D  I+ R   +A   R  A+  +LR+   +  + FC
Sbjct: 193 EQLAARFLRTPERVEVEA---MHDDDQIEQRFYEIAPGQRMQAVSILLRHFRKQPVVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR         L        AL G+L Q+ER   L +  +    V +ATDVAARG+D+ 
Sbjct: 250 ATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVATDVAARGLDIA 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            LE+VI+ ELS + E  +HR GR+GRAG KG+++ ++      RA+ +      ++ W P
Sbjct: 310 GLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIETLQGKTLAWYP 369

Query: 372 APSVEA 377
            P+ ++
Sbjct: 370 LPATKS 375


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 449

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 200/346 (57%), Gaps = 6/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++  A+ + G+   + +Q A++   L  KDV+  A+TG+GKT AF + +   L   
Sbjct: 47  DLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQL--- 103

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P A+ I PTRELA QV  E E L +     +AV  GG +++R+ R L+NG 
Sbjct: 104 -DSLEDCRDPQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQLRQLENGT 162

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++   L  +++  VVLDEAD MLD+GFR  IE I+   P+ R+ L+ 
Sbjct: 163 QLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLL 222

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  LA++Y  + V ++   +      I+ R   +A  D+   + ++L+    +
Sbjct: 223 SATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPE 282

Query: 246 NAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            AI+FC T+    R  + L+ E+     A+ G+L Q+ER   LQ +RDG  +  +ATDV 
Sbjct: 283 QAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVV 342

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            RGID+  +  +++ ++  + ++ +HR GRTGR GR G++  FV+P
Sbjct: 343 GRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVP 388


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 203/361 (56%), Gaps = 10/361 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DASRFITQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV   L  L  Y     V+ +C GGV    +R  L +  HI+V TP
Sbjct: 75  ---LVLCPTRELADQVAAALRRLARYMPNIKVLTLC-GGVPFGAQRDSLIHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + L++  L+ ++LDEAD MLD+GF D ++ ++  +P+KR+ L+FSAT    
Sbjct: 131 GRLLDHLKKETLSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q+D + + I ++    + ++ R   V+ S +   +  +L  H   + +VFC+
Sbjct: 191 IAAISRRIQRDPLTIEIDTDGELPA-VEQRFYEVSRSGKTGLLQALLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E    V+ L G++ Q++R   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L +VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L     V + W+P 
Sbjct: 310 LAMVINYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRANALEEMLGVRLQWQPQ 369

Query: 373 P 373
           P
Sbjct: 370 P 370


>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 679

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 224/413 (54%), Gaps = 17/413 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY N   VQE ++ P L     DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVI-PYLLGVNNDVVALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   + A  +         AL ++PTREL +Q+  +LE  Y+K   GV V    GG ++
Sbjct: 60  PVLQKVDATRN------VTQALILSPTRELCLQIADDLEN-YSKYLPGVRVLPVYGGANI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ G  ++V TPGRL D +     ++ H++ VVLDEADEML +GF + I+ IL 
Sbjct: 113 EPQIRTLRKGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+    L+FSAT+S  I  ++K Y ++A  + + S N     +++   +V   D+  A
Sbjct: 173 GVPENHNTLLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNHVYYMVHAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+    AI+FC TR         L +  +   +L G+LSQQ+R   +Q  R  R
Sbjct: 233 LKRIVDYYPKIYAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHR 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ ++    + 
Sbjct: 293 VQFLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERS 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +   + +      V    PS + I  +   +++ D   ++ ++ DE+++   L
Sbjct: 353 KIREIEKVIGKEFVKGEMPSGKEICAKQLYKVIDD---IERVEVDEEEIEQFL 402


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 200/361 (55%), Gaps = 8/361 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY+N+T +Q A L P L  KDV   A+TGSGKT AFGL L   + A+   F   S 
Sbjct: 18  LQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLGLLQHIDAK--LFKTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L  A   + +    GGV    +R  L + AHI+V TPG
Sbjct: 75  ---LVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSVQRDSLAHAAHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  + + +  L+ +VLDEAD MLD+GF  DIE I+D +P  R+ L+FSAT    I
Sbjct: 132 RLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYAPINRQTLLFSATWPEEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +++  Q +   + I S +   + ++ +   VA  ++   +  +L      + +VFC+T
Sbjct: 192 ARISQQIQNNPQTIEINSVDELPA-VEQQFYEVARHEKIELLQKLLSREQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L      V+ L G++ Q+ER   L    +G +RV +ATDVA+RG+D+  L
Sbjct: 251 KKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVASRGLDIKAL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L    N+ + W+  P
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWQTEP 370

Query: 374 S 374
           +
Sbjct: 371 T 371


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  + V +   + + + I+          R   ++++L Y+   + +VFC
Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSYYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELVI+ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368

Query: 371 PAPSV 375
           PA  V
Sbjct: 369 PAEQV 373


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 198/352 (56%), Gaps = 7/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I + L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + AEN       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKINAEN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346


>gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 528

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 162/514 (31%), Positives = 259/514 (50%), Gaps = 41/514 (7%)

Query: 11  IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IGE    ALS++GY   T +Q   +   L  EKD++  AQTG+GKT AF L +   +   
Sbjct: 15  IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+         + + PTRELA+QV  E+  L +   + +    GG S+  +R+ L+NGA
Sbjct: 74  QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRNGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ + +RML F
Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK + KD   + + +        D     V   D+  A+  I+      
Sbjct: 188 SATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAA
Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +   
Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAG 419
             +  E  P V+ + +    +I +D   +D I G+      KK+   LL K + E I A 
Sbjct: 367 TEIRKEEVPEVKDVIQAKKFQIQKD---IDEILGEGEYDKFKKLAQDLLKKEEAENIVAS 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L++      A E++   S       + + S    VGGG    F       +++G K   
Sbjct: 424 LLKL------AYEDVLDES------NYNEISSTKSVGGGKARLF-------VALGRKDGM 464

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            A+ L+  + + + +  + I  + V    +F+ V
Sbjct: 465 TAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 267/520 (51%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  EKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  A+  I+   
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--IASKIEENKYEKFMPMVKTLEQNFDLSQ 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +  ++ +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 267/520 (51%), Gaps = 44/520 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + S L  +
Sbjct: 10  NLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVISALCDK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL + PTRELA+Q+  EL+ L  Y+KT V+     GG S+ R+ +D+++
Sbjct: 70  EKK----KGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVY--GGESIERQIKDIKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++++ +
Sbjct: 124 GVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  LA NY +KD   + I  ++     I      V   D+  A+  I+   
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRIIDSE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       +ATD
Sbjct: 244 EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           VAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +   V P+ +   R+ ER+
Sbjct: 304 VAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQIERI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEK 415
            +     +  +  P++E I E+    +L D      I+ ++ +    MV  L    D  +
Sbjct: 364 TKS---KIKKKELPTLEDILEKKYDNLLND--IASKIEENKYEKFMPMVKTLEQNFDLSQ 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           ++A  + +               L S    F   +   +     R          LSVG 
Sbjct: 419 VSAALMEM---------------LFSKEMSFDYTNNKLEAEVPVR--------LFLSVGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K     + L+  +  ++ +    IG I +    TF++VS+
Sbjct: 456 KDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSS 495


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 142/431 (32%), Positives = 235/431 (54%), Gaps = 29/431 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S+ G+   T +Q A +   L+ +DV+  AQTG+GKT AFG+ L   +   ND     
Sbjct: 18  KAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFGIPLIEKIDMNND----- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  A+ +APTRELA+QV  EL  + +   V V    GG  + R+ R L+   HI+VGTP
Sbjct: 73  -AVQAIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIERQIRALKKHPHIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI+ + L + H+  VVLDEADEML++GF +DIE IL   P +R+ L+FSAT+   
Sbjct: 132 GRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSHVPTERQTLLFSATMPEP 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   V + ++     +I+   + +    + + +  +L     + AIVF  
Sbjct: 192 IRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEIQEKKKFDTLTRLLDIQSPELAIVFGR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    + G+LSQ +R + L+  ++G   + +ATDVAARG+D+  
Sbjct: 252 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIDILVATDVAARGLDISG 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           +  V + ++  +PE+ +HR GRTGRAG+ GM++ FV P+ + +                 
Sbjct: 312 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQLHH-------------- 357

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
              +E   +R  +R ++ P   ++++G ++  ++ LLA  +   +A  F +  RA     
Sbjct: 358 ---IEKTTKRKMER-MKPPTLDEALEGQQRAAIEKLLATIEHNNLA--FYK--RAAEELL 409

Query: 432 EEITPVSLVSG 442
           EE   VSLV+ 
Sbjct: 410 EEHDSVSLVAA 420


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D       P  L +APTRELA+QV    E       GV V    GG     + R L+ G+
Sbjct: 69  D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               V       + A R    +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 165/532 (31%), Positives = 257/532 (48%), Gaps = 37/532 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q   +   L   D    AQTG+GKT AFGL +        D+ +P 
Sbjct: 16  KAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPIL-------DKLTPE 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL + PTRELA+QV  EL  L A K GV +    GG  + R+ R L  G  +VVGT
Sbjct: 69  RNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLRALAKGVQVVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH++   L +S     VLDEADEMLD+GFR+DIE IL+ +P   + ++FSAT+ P
Sbjct: 129 PGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPASCQRVLFSATVPP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L+K + ++   + +A +      I+     V    + +A+  +L       A+VFC
Sbjct: 189 AIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLLDSRAFHKALVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST+      T  L +  +Q  +L G L+Q +R   +Q  R     V +ATDVAARG+D+ 
Sbjct: 249 STKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLDVD 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D++ VI+ ++  + E  +HR GRTGRAGR G +   +      +   + R     +    
Sbjct: 309 DVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDIIRCTRARITEGR 368

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK-------KMVDVLLAKHDPE------KIAA 418
            PS+     RD   I    L  +  Q  E         +V+  LA   P+       ++A
Sbjct: 369 LPSL-----RDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEITSRDVSA 423

Query: 419 GFLRI----HRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGS------RDNFKGSS 467
              ++           P +  P++L   R  + RD +   +  G        R+N    +
Sbjct: 424 ALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGARPQRRENDGPMT 483

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
              L+VG   KA  R L+  +   +GI+ + IGAI +  +   VE++ +  D
Sbjct: 484 RLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQEMAD 535


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D       P  L +APTRELA+QV    E       GV V    GG     + R L+ G+
Sbjct: 69  D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               V       + A R    +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIHTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/395 (34%), Positives = 222/395 (56%), Gaps = 12/395 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +++ + GY   + +Q A +   +  KD++  AQTG+GKT AF L + S L A+++
Sbjct: 17  PAVL-KSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLSRLDAKDN 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
                     L +APTRELA+QV    +  YAK   G+ V    GG     + R L+ GA
Sbjct: 76  NTQ------LLVLAPTRELAIQVAEACQS-YAKNMPGLNVLPIYGGQKYDIQLRQLKRGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHIR   L + +LKA+VLDEADEML +GF DD+E++L  +PK R++ +F
Sbjct: 129 QIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTPKTRQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ Y  +   + I ++    + I+ R  LV+   + +A+  +L      
Sbjct: 189 SATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIHKLDALTRVLETEEFD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ + +     L    F+  AL+G+++Q  R   ++ ++ G+  + IATDVAA
Sbjct: 249 GMIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDILIATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R  N 
Sbjct: 309 RGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLKAIERATNQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +     PS++ I E+   R  +    L +I+ D+
Sbjct: 369 PITEMQMPSIDNINEQRMSRFERK--VLSTIENDD 401


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 208/354 (58%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I +A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  +N+         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIAIDNNVIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P +
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++     +++   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   ++  ++    + +
Sbjct: 235 DIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G SV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 203/351 (57%), Gaps = 8/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AFGL L + L   
Sbjct: 10  NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLAKLNVN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +E+  L  A   V +    GG     +   L  G
Sbjct: 70  RLEVQ------ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLSFG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI VGTPGR+  H+    L +S LK +VLDEAD MLD+GF +DI  ++  +P++R+ L+
Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +++  Q++ V V++ S + + S I+ +   V    R +A+  +L ++  
Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLH-EGSAIEQKLYEVPAGQRLDALTWLLSHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDVA
Sbjct: 243 SSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R
Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 353


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 171/544 (31%), Positives = 280/544 (51%), Gaps = 57/544 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V  +A+   G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S L  ++ 
Sbjct: 140 PEVF-DAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSRLNLKSR 198

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           +      P AL +APTRELA+QV    E    K G V  + I GG     +   L+ GAH
Sbjct: 199 K------PQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGAH 252

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH++   L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +FS
Sbjct: 253 VVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFS 312

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  L+K Y      V + S  R   +I+   ++V   ++ +A+  IL       
Sbjct: 313 ATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFDA 372

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+       + L    ++  A++G+++Q +R   +  ++DGR  + +ATDVAAR
Sbjct: 373 MIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAAR 432

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365
           G+D+  +  V + ++  + E+ +HR GRTGRAGR G +V FV P+  +RR  +    A  
Sbjct: 433 GLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPR--ERRMLKSIERATK 490

Query: 366 SVVWE-PAPSVEAIRE-------RDAQRILQDP---LFLDSI----QGDEKKMVDVLLAK 410
           S + E   PSV+ + E       R+  + L+DP   +F D +    + +   + D+  A 
Sbjct: 491 SRLNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTYAEANGVTLEDIAAAL 550

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFK---- 464
               +    FL           E  P      R  DR+ D   A + GGG+  +F+    
Sbjct: 551 AAGAQGGEKFLM----------EEAPRREHKRRSDDRYGD---ADRRGGGAYRSFEERFN 597

Query: 465 ----------GSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                     G+    + LSVG +Q+     ++  L    G+N +  G I +  + + VE
Sbjct: 598 KPAPRFTDRNGNEMEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVE 657

Query: 513 VSAD 516
           + AD
Sbjct: 658 LPAD 661


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 266/521 (51%), Gaps = 41/521 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L  +  +     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAH+VVGTP
Sbjct: 75  -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D V V++A +N     +  +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373

Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                     + + A  +EA +E  A         LD      +K+   L  + DP  +A
Sbjct: 374 PLRDQVAEARLNKLAAELEAEKEHKA---------LDKFAELVEKLQTSL--EIDPAMLA 422

Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472
           A  L+     R      E+  P+     RD+ +      + G     +F    W  + L 
Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNNQDWDTYQLQ 479

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG +Q  + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 528

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/509 (30%), Positives = 252/509 (49%), Gaps = 35/509 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F
Sbjct: 19  ILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENF 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VV
Sbjct: 72  ENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+
Sbjct: 132 GTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNA 247
              I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        
Sbjct: 192 PDEIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYG 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARG
Sbjct: 250 IIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           ID+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     
Sbjct: 310 IDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKE 368

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++ 
Sbjct: 369 IKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLS 428

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            + +        +S V   D                    G +   +++G K     + L
Sbjct: 429 YSDVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKL 469

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +  + + + I +  I    V    +FV V
Sbjct: 470 VEFIIKKAKIKQSYIKNAEVYEGFSFVSV 498


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 227/419 (54%), Gaps = 10/419 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ 
Sbjct: 13  LPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQI 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D       P  L +APTRELA+QV    E       GV V    GG     + R L+ G+
Sbjct: 69  D--PTKRHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L      
Sbjct: 187 SATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFRE 362
           RGID+  + LV++ ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++
Sbjct: 307 RGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKK 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               V       + A R    +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 367 PIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 425


>gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 483

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 203/346 (58%), Gaps = 7/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+     L E G+  L  VQ   +   L  +D+LV ++TGSGKT A+ L L   ++
Sbjct: 54  FDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV 113

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++        P AL + PTREL +QV  E E L   TG+      GGVS   + + L++
Sbjct: 114 RDH------PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRS 167

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H++V TPGRL DHI+   +++  ++ +VLDEADEML +GF  D++ I    PK     
Sbjct: 168 GVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCT 227

Query: 184 MFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M+SATI   + +LA+ +Q+  A  ++++ +    +++++R     + ++D+  + +L Y+
Sbjct: 228 MYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEYY 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ ++FC+ +  VS   +VL+ + F+V ALSG+++Q  R   L   RD + ++ I TD
Sbjct: 288 NPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI  +  ++ E  +HRSGRT RAGR G+ + +I
Sbjct: 348 VAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 393


>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
           4252]
          Length = 505

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 237/436 (54%), Gaps = 33/436 (7%)

Query: 5   ENIPQVIGEALSER--------GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           E +P+V    L ER        G+  L  VQ   L   L  +DV+V +QTGSGKT AF L
Sbjct: 35  EPLPEVSLAELPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLL 94

Query: 57  ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVA------VCI 109
            L        +R  P+   + AL + PTRELA Q+    E +  KTGV  A      +  
Sbjct: 95  PL-------FERLDPSRGQVQALILTPTRELARQISEAFEQM--KTGVSGAQSLRAVLVY 145

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGV    + + L+ GA +V+GTPGR+ D I    L +  L+ +V DEADEML +GF   +
Sbjct: 146 GGVRYGPQLKALEQGAQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAM 205

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             +    P++R   MFSAT+ P +  LA+ + KD   V+++++      I++R  +V   
Sbjct: 206 RQLKRYLPRERNTAMFSATMPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPM 265

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++D A+V ++     ++AI+F +T+  V    + L  + +   A++G+L Q++R   +  
Sbjct: 266 EKDRALVQLIELENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDR 325

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R G+ R+ +ATDVAARGID+ DL  V   ++  +PE  +HRSGRTGR G++G ++ ++ 
Sbjct: 326 LRKGQLRLLVATDVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVT 385

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDV 406
              + R   + R+ ++ +     P+ E + ER A+R   +L+D  + ++   D +++   
Sbjct: 386 PLEEARLRAIARQYDIPLEKGTLPTPETVAERVAERAVALLED-RYRETTSLDRERIARF 444

Query: 407 L-----LAKHDPEKIA 417
           +     LA+ +PE +A
Sbjct: 445 VPLVEQLAQEEPELLA 460


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P  R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDSRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
 gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
          Length = 607

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/545 (28%), Positives = 263/545 (48%), Gaps = 55/545 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 11  NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122
                P+   P  L + PTRELA+QV    E  YAK   GV V    GG S   +   L+
Sbjct: 68  ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKHTRGVEVLALYGGQSYSIQLSALR 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA I+V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++++ 
Sbjct: 123 RGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I  ++  Y  +  +V+I++ N   S ++ +    A   ++ AIV  L   
Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNAHVHKNKAIVRFLEAE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF  TR    +  ++L    F    L+G+++QQ R   +  ++ G   V IATD
Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + + R 
Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ---------DPLFLDSIQGDEKKMVDVLLAKHDP 413
               +     P+ + + E+    + +         D  F + +  +  + +++      P
Sbjct: 362 TKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELA-----P 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFKGSS-- 467
           E +A          LC  ++ +P+ +    +  R+R   + R  +     R N +G    
Sbjct: 417 EDLAGAL-------LCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERGGERA 469

Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + VG +   + + ++  +   + I+ + IG IR+    + V
Sbjct: 470 ERKPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTV 529

Query: 512 EVSAD 516
           ++  +
Sbjct: 530 QLPQN 534


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N       
Sbjct: 36  AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 92

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPG
Sbjct: 93  ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 149

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI
Sbjct: 150 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 209

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K    V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 210 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 269

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 270 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 329

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 330 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 369


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 206/366 (56%), Gaps = 18/366 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  RF     
Sbjct: 19  LQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVK--RFHVQ-- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +E+  L A+T   + V    GG+    +   L++GAHI+VGTP
Sbjct: 75  --ALVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQLGSLEHGAHIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R   L + +L  +VLDEAD ML++GF++ ++ I+D +P+ R+ L+FSAT    
Sbjct: 132 GRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLFSATFPRQ 191

Query: 193 ITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           I ++A    K  V V + + +      QH    +  V    +DR  A+  +LRY+   +A
Sbjct: 192 IESIAGRVMKTPVMVQVEATHDSAVITQH----FYEVADDTADRQQALRRLLRYYQPTSA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC+T+         L EH F  +AL G+L Q+ER  +L    +G A + +ATDVAARG
Sbjct: 248 VVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L+ V +  ++ + E  +HR GRTGRAG  GM+  +       + ERL +  + S+
Sbjct: 308 LDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERLAKFLDQSL 367

Query: 368 VWEPAP 373
             EP P
Sbjct: 368 TGEPLP 373


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  +  ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
 gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
          Length = 640

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 231/446 (51%), Gaps = 28/446 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+SE G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +       + +    A+ ++PTREL +Q+  +L E+      + +A   GG S+ 
Sbjct: 60  PLLQRI------DTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL  
Sbjct: 114 TQIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+
Sbjct: 174 VPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R    
Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + RE +   V    PS E         I +  LF        K M D+L    D ++
Sbjct: 354 VRNIEREISKDFVDGTLPSPE--------EICKKQLF--------KTMDDILKTDVDEDQ 397

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441
           IA     I+R      +E+    +VS
Sbjct: 398 IAPYMKDINRQFEYIDKEVVIKKIVS 423


>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
 gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
          Length = 472

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 200/349 (57%), Gaps = 7/349 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I EAL   GY    +VQEA++   L ++DV+V A+TGSGKT +F + +   L+  N
Sbjct: 8   LEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQQLIW-N 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P +L +APTRELA+Q+  E + + AK  +      G      +++DLQ   H
Sbjct: 67  EKL-----PQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQDLQQRTH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++  TPGR+ DH+R    + S ++ VV+DEAD MLD+GF D++E +LD  PKKR   +FS
Sbjct: 122 VICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKRTTALFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +  D + + + ++   H +I++    +   D++ A++++L     ++
Sbjct: 182 ATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLGKETVES 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+  V    +VL  H  +V  L G L Q+ER   L+  R G  R+ +A+DVAAR
Sbjct: 242 AILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVASDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           GID+ D+  VI+ +     E  +HR GRT R    G ++ FV  ++ ++
Sbjct: 302 GIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEK 350


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 203/362 (56%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL L   L  +  RF+  S 
Sbjct: 18  LNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DAGRFNTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  Y     V+ +C GGV    +R  L +  HI+V TP
Sbjct: 75  ---LVLCPTRELADQVANELRRLARYMPNIKVLTLC-GGVPFSIQRDSLTHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + +N+  L+ +VLDEAD MLD+GF D I+ ++   P +R+ L+FSAT   A
Sbjct: 131 GRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHVPDQRQTLLFSATWPDA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q D + + I + +   + ++ +   V+ S + + +  +L      + +VFC+
Sbjct: 191 IAAISHRIQHDPLVIEIDTVDELPA-VEQQFYEVSRSGKLDLLQKLLSREQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L      V+AL G++ Q++R   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+V++ ELS +PE  +HR GRT RAG  G+++ +      +RA  L    N+ + W P 
Sbjct: 310 LEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNLKLSWHPL 369

Query: 373 PS 374
           P+
Sbjct: 370 PT 371


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/521 (31%), Positives = 266/521 (51%), Gaps = 41/521 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L  +  +     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAH+VVGTP
Sbjct: 75  -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D V V++A +N     +  +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373

Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                     + + A  +EA +E  A         LD      +K+   L  + DP  +A
Sbjct: 374 PLRDQVAEARLNKLAAELEAEKEHKA---------LDKFAELVEKLQTSL--EIDPAMLA 422

Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472
           A  L+     R      E+  P+     RD+ +      + G     +F    W  + L 
Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNNQDWDTYQLQ 479

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG +Q  + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 200/349 (57%), Gaps = 9/349 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           ALSE+GY   T +Q   +   L  KD++ +AQTG+GKT  F L +   LL   N   SPA
Sbjct: 52  ALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPIIQRLLPLANASASPA 111

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +      T +   V  GGV ++ +   L+ G  I+V T
Sbjct: 112 RHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEILVAT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT SP
Sbjct: 172 PGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 231

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----AKNA 247
            I  LA +Y K  V + +A  N  + ++     LV    +  A+V++L+       ++  
Sbjct: 232 EIKRLASSYLKHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVVHLLKQRAEQGLSRQC 291

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G     +ATDVAARG
Sbjct: 292 IVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKSGTIDALVATDVAARG 351

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQR 354
           +D+PD+  V++ ++  + E+ +HR GRTGRAG  G  +S++V P N +R
Sbjct: 352 LDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYV-PGNDER 399


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 166/538 (30%), Positives = 271/538 (50%), Gaps = 52/538 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ + G+   + +QE  +   +   DV+  AQTG+GKT AF L + +       R  P+
Sbjct: 124 EAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILA-------RIDPS 176

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P AL +APTRELA+QV    E      G +  + I GG +   +   L+ GAHIVVG
Sbjct: 177 KRHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLSGLRRGAHIVVG 236

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +FSAT+ 
Sbjct: 237 TPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALFSATMP 296

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+K Y  D   + + S  R   +I+   + V   ++  A+  IL     +  I+F
Sbjct: 297 AGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYLFVNHRNKLEALTRILEVTEFEAMIMF 356

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAARG+D+
Sbjct: 357 VRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDV 416

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
             +  V + ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR  +    A  S + 
Sbjct: 417 DRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPR--ERRLLKAIERATKSTLN 474

Query: 370 E-PAPSVEAIRE------RDA-QRILQDP-------LFLDSIQGDEKKMVDVLLAKHDPE 414
           E   PSV+A+ +      R+A Q  L DP       L  +     E  M D+  A     
Sbjct: 475 EIELPSVDAVNDARKEKFREALQESLGDPQLGVFRELVTEFATSTETPMEDIAAALAAQI 534

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-------- 466
           +    FL      +    +    +     DR+ D+ R+   GGGS  +F+          
Sbjct: 535 QAGEDFL------MKEMPKEERPARRRREDRYGDEGRS---GGGSYRSFEERFNKEAPRV 585

Query: 467 --------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                   + + LSVG +Q+     ++  +    G+N +  G I +  + + +E+ AD
Sbjct: 586 TDRNGNELAVYRLSVGHRQRVRPGAIVGAIANEGGLNSRDFGRISIFSEHSLIELPAD 643


>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 488

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 224/397 (56%), Gaps = 10/397 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  A+S+ GY  LT +Q   +   L  +D++ +AQTG+GKT AF L +   LL   +   
Sbjct: 26  ILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLASTSV 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL +APTRELA QV   L+     T +  A   GG+ +  ++ +L+ G  ++
Sbjct: 86  SPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  K +N+  ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT
Sbjct: 146 VATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA++Y ++ + V +A  N   ++++ R   V   D+   +V +LR +     I
Sbjct: 206 FSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPLPQVI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R    R T++L     +  A+ G+ SQ ER   L+  + G  +  +ATDVAARG+
Sbjct: 266 VFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFR 361
           D+ +L  V++ ++  + E+ +HR GRTGRAG  G+++ +          ++++  +R F 
Sbjct: 326 DIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIKRQFE 385

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           +  VS+   P P  +A   R+  RI + P  L S  G
Sbjct: 386 KQTVSLERAPRPRRDADETRE-HRIARAPRALPSDTG 421


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 215/369 (58%), Gaps = 13/369 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY N + +Q A + P L   DV+  AQTG+GKT AF + + S +  E      + 
Sbjct: 42  ALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLSKIDGE------SR 95

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P AL +APTRELA+QV     ++      + V    GG S   +   L+ GA I+VGTP
Sbjct: 96  TPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGAQIIVGTP 155

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S+L+ +VLDEADEML +GF++D+E IL  +P+ +++ +FSAT+ PA
Sbjct: 156 GRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALFSATMPPA 215

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK Y  D V +++ ++    S+I  R + VA   + +A+  +L        I+F  
Sbjct: 216 IRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFDGMIIFVR 275

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+++     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D+  
Sbjct: 276 TKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAARGLDVER 335

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVVW 369
           +  V++ ++  + E+ +HR GRTGRAGRKG + +FV P  +++ R  E+  R+    +  
Sbjct: 336 ISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKATRQPLTEIGL 395

Query: 370 EPAPSVEAI 378
              PSVE +
Sbjct: 396 ---PSVEDV 401


>gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 616

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 207/379 (54%), Gaps = 12/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 11  NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122
                P+   P  L + PTRELA+QV    E  YAK   G+ V    GG S   +   L+
Sbjct: 68  ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKHVRGIEVLALYGGQSYSIQLSALR 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA ++V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++++ 
Sbjct: 123 RGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I  ++  Y  +  +V+I++ N   S ++ +    A   ++ AIV  L   
Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNASIHKNKAIVRFLEAE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF  TR    +  ++L    F    L+G+++QQ R   ++ ++ G   V IATD
Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + + R 
Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361

Query: 363 ANVSVVWEPAPSVEAIRER 381
            N  +     P+ + + E+
Sbjct: 362 TNSDIAQVELPTAKIVEEK 380


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/343 (39%), Positives = 198/343 (57%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +  F+    
Sbjct: 19  LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  +A+   ++ +C GG  + ++   L +  HIVVGTP
Sbjct: 75  --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    
Sbjct: 132 GRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+   R  IA +  + S I+ R        R   ++ IL ++   + +VFC+
Sbjct: 192 IEQISARVQRQPQRFEIA-DGVEESAIEQRFYETTKDQRLPLLIAILGHYQPSSCVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +
Sbjct: 251 TKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           LELV++ EL+ +PE  +HR GRTGRAG KG++V    PQ M R
Sbjct: 311 LELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNR 353


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + +++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTSRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +  N+ K+   V IA++      ID   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N       
Sbjct: 36  AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 92

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPG
Sbjct: 93  ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 149

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI
Sbjct: 150 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 209

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K    V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 210 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 269

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 270 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 329

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 330 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 369


>gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 553

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 205/368 (55%), Gaps = 9/368 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A S+ G+     VQ+ ++ P L     D++  ++TGSGKT A+GL L   ++      + 
Sbjct: 15  ATSDLGFSEPMPVQQEVI-PYLSSHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130
            SAP  L + PTRELA+QV  +L  L   T V  +    GG S+  + R L  G HI+V 
Sbjct: 69  GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLCD +R K + +  +  VVLDEAD MLD+GF+ D++ IL + P++    +FSAT+S
Sbjct: 129 TPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  ++ Y+     I+F
Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TRA      + L    +   AL G+LSQ +R   +   R    ++ +ATDVAARG+D+
Sbjct: 249 CRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   + R A + +   
Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIERHAGIRIEAM 368

Query: 371 PAPSVEAI 378
           P PS + I
Sbjct: 369 PLPSGQEI 376


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 15/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +P V+   L   G+   T +Q+  +   L   DVL  AQTG+GKT AF L ALAS  +  
Sbjct: 15  LPSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPALAS--IEA 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N R +       L + PTRELA+QV   +E    +  G+ VA   GG +   + + L+ G
Sbjct: 73  NQRQTQM-----LVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQALKRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGRL D +  K L +  L+  VLDEADEML++GF +DIE IL S P   +  +
Sbjct: 128 ASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDTAQRAL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  LAK Y  D V + IA   +  ++I  RA  V    +  A+  +L     
Sbjct: 188 FSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQRAWKVMGMTKMTALTRLLEVTEY 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VF  TR       ++L    F+   LSG+L+Q +R   +  +R G  +V +ATDV 
Sbjct: 248 QRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLVATDVV 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361
           ARG+D+P++  VI+ +L S+ E+ +HR GRTGRAGR G ++       +++ R  E+L  
Sbjct: 308 ARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLRHYEKL-- 365

Query: 362 EANVSVVWEPAPSVEAI 378
             N S+ +   PS E +
Sbjct: 366 -TNGSIEYFDVPSAEEL 381


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/361 (36%), Positives = 206/361 (57%), Gaps = 8/361 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T +Q A L   L  KDV   A+TGSGKT AFGL L   L  +  +F   S 
Sbjct: 18  LNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DAGQFKTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + V V  GGV    +R  L +  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSIQRDSLIHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   AI
Sbjct: 132 RLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHAPAERQTLLFSATWPEAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +++  Q+D + + I + +   + ++ +   V+ + + + +  +L      + +VFC+T
Sbjct: 192 AAISRRIQRDPLVIEIDTVDELPA-VEQQFYEVSRNGKLDLLQKLLSREQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L      V+AL G++ Q++R   L    +G +RV +ATDVAARG+D+  L
Sbjct: 251 KKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKAL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E+VI+ ELS +PE  +HR GRT RAG +G+++ +      +RA  L     + + W P P
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANALEEMLKMKLTWHPLP 370

Query: 374 S 374
           S
Sbjct: 371 S 371


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++   +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLMDVEQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/517 (31%), Positives = 269/517 (52%), Gaps = 30/517 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL   G+V+ T +Q A +   L+  D L  AQTG+GKT AF L L + L LA+       
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAH++VGT
Sbjct: 74  -KPQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRALKNGAHVIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P   + ++FSAT+ P
Sbjct: 133 PGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  + + + +D V V++A +N     +  +  +V   ++D A+  +L       +IVF 
Sbjct: 193 MLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368
            +  V + ++  + E+ +HR GRTGRAGR+G ++ ++  N   M R  ER+ + +   + 
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 372

Query: 369 WEPAPSVEAIRERDAQRILQDPL-------FLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                 V A R       LQ  +       F + I+  E+++      + D   +AA  L
Sbjct: 373 LPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERL------EIDSSVLAAILL 426

Query: 422 RIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS-W--FSLSVGSK 476
           +  +    L    E   +  +    + R + R  +  GG R++F  +  W  + L VG +
Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKQNRRERRENRDNGGRRESFNSNQDWDTYQLQVGRE 486

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           Q  + + ++  L    G+ + SIGAI++  + TFV++
Sbjct: 487 QGVQVKDIVGALANELGLGKGSIGAIKLAQEHTFVQL 523


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 220/418 (52%), Gaps = 11/418 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E++   G+   + +Q   +   L   D++  +QTGSGKT AF L     L   N 
Sbjct: 13  PELL-ESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPALHGLDLSN- 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
                 A   L + PTRELAVQV  E+  L      + A+ + GG  + R+ R L+ G H
Sbjct: 71  -----KATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQIRALKKGVH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH++ K L    ++  +LDEAD MLD+GFR+D+E ILD+ P++R+ L FS
Sbjct: 126 VVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQERQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  L K +  DA ++ I  +      I+     V    +   +  +L     + 
Sbjct: 186 ATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRLLDMEPTQR 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC+T+  V    + L    +    + G++SQ  R   ++  RD    + +ATDVAAR
Sbjct: 246 GIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+ELV + +L  +PE+ +HR GRTGRAGR G S+  +     RR E + R    S
Sbjct: 306 GLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEAIERYIRQS 365

Query: 367 VVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +     PS E +    A +I   L+D L     +  + ++  +L A H P  IA+  +
Sbjct: 366 IRRTRIPSQEEVEGYRADKIFNQLRDKLEAAEFKNYDHQVDRLLDAGHTPTDIASALI 423


>gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
 gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
          Length = 640

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 231/446 (51%), Gaps = 28/446 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+SE G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +       + +    A+ ++PTREL +Q+  +L E+      + +A   GG S+ 
Sbjct: 60  PLLQRI------DTSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL  
Sbjct: 114 TQIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+
Sbjct: 174 VPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R    
Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + RE +   V    PS E         I +  LF        K M D+L    D ++
Sbjct: 354 VRNIEREISKDFVDGTLPSPE--------EICKKQLF--------KTMDDILKTDVDEDQ 397

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441
           IA     I+R      +E+    +VS
Sbjct: 398 IAPYMKDINRQFEYIDKEVVIKKIVS 423


>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
 gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 632

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 178/593 (30%), Positives = 276/593 (46%), Gaps = 45/593 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E        
Sbjct: 20  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNNLKPE------LK 73

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     ++     GV V    GG     + R L+ GA IVVGTP
Sbjct: 74  APQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALRGGAQIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+  A
Sbjct: 134 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATMPEA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   V I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 194 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 254 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 314 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 373

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHRA 426
           P+ E + +R   +          ++  +  M   LL K  P      E +AA  L++ + 
Sbjct: 374 PNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLTKLQPQEELDIETLAAALLKMAQG 431

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-----------SRDNFKGS--------- 466
               P  + P      R  FRD   +     G           SRD  +           
Sbjct: 432 --ERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRDGDRPQRRERRESGE 489

Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
              + + VG     E R ++  +     I+ + IG I++    + +E+      D +   
Sbjct: 490 MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGDLLSHF 549

Query: 522 RRTVKLDKGIQLKYLGG--EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            RT  L+K + ++ LG    +P+ RG           +DGA  R + F G  +
Sbjct: 550 TRTRILNKPMNMQLLGDAVAQPERRGGNRPAGAGGERRDGAAPR-RSFGGGER 601


>gi|313885882|ref|ZP_07819622.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924637|gb|EFR35406.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 553

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 162/525 (30%), Positives = 268/525 (51%), Gaps = 29/525 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A S+ G+     VQ+ ++ P L     D++  ++TGSGKT A+GL L   ++      + 
Sbjct: 15  ATSDLGFSEPMPVQQEVI-PYLSSHRGDLIALSKTGSGKTAAYGLPLLERIIQ-----AK 68

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVG 130
            SAP  L + PTRELA+QV  +L  L   T V  +    GG S+  + R L  G HI+V 
Sbjct: 69  GSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLAKGYHIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLCD +R K + +  +  VVLDEAD MLD+GF+ D++ IL + P++    +FSAT+S
Sbjct: 129 TPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEHWLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  ++ Y+     I+F
Sbjct: 189 REVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYYPNIYGIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TRA      + L    +    L G+LSQ +R   +   R    ++ +ATDVAARG+D+
Sbjct: 249 CRTRAETKEIAEWLIRDGYNADTLHGDLSQAQRDMVMNRFRIRNLQLLVATDVAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   + R A + +   
Sbjct: 309 DDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIERHAGIRIEAM 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDS----IQGDEKKMVDVL---LAKHDPEKIAAGFL-- 421
           P PS + I ++    +     + DS     Q DE  +++ +   LA   PE+I    L  
Sbjct: 369 PLPSGQEICKKQLFALATRIEYADSNEHGTQYDE--LLNAIVQKLAWLPPEEIIRRVLTL 426

Query: 422 ---RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----SRDNFKGSSWFSLSVG 474
              RI R     P +++   L +   ++R  S   +        SR +    +   +++G
Sbjct: 427 EADRIMRYYANTP-DLSAQELATEEPKYRTKSTPEEHRKAPKKRSRTDLPPMTSLRINLG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            + K     L+ ++ R+    + +IG I +    ++ EV+++  D
Sbjct: 486 KRDKLYPNRLLELINRTLPY-QITIGKIDLSLSYSYFEVASEWAD 529


>gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
          Length = 528

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 161/514 (31%), Positives = 259/514 (50%), Gaps = 41/514 (7%)

Query: 11  IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IGE    ALS++GY   T +Q   +   L  EKD++  AQTG+GKT AF L +   +   
Sbjct: 15  IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+         + + PTRELA+QV  E+  L +   + +    GG S+  +R+ L+NGA
Sbjct: 74  QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRNGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ + +RML F
Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK + KD   + + +        D     V   D+  A+  I+      
Sbjct: 188 SATMPSEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAA
Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +   
Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAG 419
             +  E  P V+ + +    +I +D   +D I G+      KK+   LL K + E I + 
Sbjct: 367 TEIRKEEVPEVKDVIQAKKFQIQKD---IDEILGEGEYDKFKKLAQDLLKKEEAENIVSS 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L++      A E++   S       + + S    VGGG    F       +++G K   
Sbjct: 424 LLKL------AYEDVLDES------NYNEISSTKSVGGGKARLF-------VALGRKDGM 464

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            A+ L+  + + + +  + I  + V    +F+ V
Sbjct: 465 TAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498


>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
 gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
          Length = 721

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 213/376 (56%), Gaps = 8/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+   G+   + +Q   +   L   DVL  AQTG+GKT AF L + S + A+ 
Sbjct: 79  LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAD- 137

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   P AL +APTRELA+QV    +    +    + V    GG +   +   L+ G
Sbjct: 138 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 192

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+ +++ +
Sbjct: 193 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVAL 252

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y  D   + + SE R +++I  R + VA  ++ +A+  IL     
Sbjct: 253 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 312

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+       + L    F   A++G+++QQ+R   ++ ++DGR  + +ATDVA
Sbjct: 313 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 372

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 373 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 432

Query: 365 VSVVWEPAPSVEAIRE 380
             +     P+V+ + E
Sbjct: 433 APLQEMELPTVDEVNE 448


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/417 (32%), Positives = 230/417 (55%), Gaps = 18/417 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I + L E G+   + +QE  +   L+ KD++  AQTG+GKT AFGL + + L   
Sbjct: 7   NLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPILNML--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL I PTRELA+QV  E+       G+  A   GG S  R+   ++N +
Sbjct: 64  ------EKGQKALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHIKN-S 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +    ++I+  + VVLDEADEMLD+GF DDI+ I    P  R+ L+F
Sbjct: 117 EVIVATPGRLIDLLSSGKIDIAP-EYVVLDEADEMLDMGFLDDIKEIFKYVPSNRQTLLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LAK   KD   + I  +   + +I     ++   +R++A++ ++ Y    
Sbjct: 176 SATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALIRLIDYKQPN 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFC T+  V      L+   F    L G++ Q++R   ++  +  R  + +ATDVAA
Sbjct: 236 KAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILVATDVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  +PE+ +HR GRTGRAG++GM++ ++  +  R   ++ + + +
Sbjct: 296 RGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKIQKISKI 355

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGF 420
            +  +  P+++ ++  + Q+I++    + SI+ + K  ++V+VL    D   IA  F
Sbjct: 356 EL--KEVPTLQDVKNTEIQKIMEK---ISSIEPNTKSIEIVEVLQNDFDLFTIATKF 407


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGI 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 195/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 463

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 203/346 (58%), Gaps = 7/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+     L E G+  L  VQ   +   L  +D+LV ++TGSGKT A+ L L   ++
Sbjct: 34  FDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVIV 93

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++        P AL + PTREL +QV  E E L   TG+      GGVS   + + L++
Sbjct: 94  RDH------PYPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALRS 147

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H++V TPGRL DHI+   +++  ++ +VLDEADEML +GF  D++ I    PK     
Sbjct: 148 GVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISCT 207

Query: 184 MFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M+SATI   + +LA+ +Q+  A  ++++ +    +++++R     + ++D+  + +L Y+
Sbjct: 208 MYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEYY 267

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ ++FC+ +  VS   +VL+ + F+V ALSG+++Q  R   L   RD + ++ I TD
Sbjct: 268 NPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICTD 327

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI  +  ++ E  +HRSGRT RAGR G+ + +I
Sbjct: 328 VAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLI 373


>gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
 gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
          Length = 600

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 175/589 (29%), Positives = 285/589 (48%), Gaps = 45/589 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 11  NLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI--- 67

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122
                P+   P  L + PTRELA+QV    E  YAK   GV V    GG S   +   L+
Sbjct: 68  ----DPSVKQPQILVLTPTRELAIQVAEAFEQ-YAKGTRGVEVLALYGGQSYSIQLSALR 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA I+V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++++ 
Sbjct: 123 RGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREKQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I  ++  Y  +  +V+I++ N   S ++ +    A   ++ AIV  L   
Sbjct: 183 CLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVE-QVFWNASVHKNKAIVRFLEAE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF  TR    +  ++L    F    L+G+++QQ R   +  ++ G   V IATD
Sbjct: 242 QYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + + R 
Sbjct: 302 VAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRH 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI--LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               +     P+ + + E+   RI  LQ  L +     D     +V  A +  EK+    
Sbjct: 362 TKSEIAQVELPTAKVVEEK---RIAALQAKLSIALENKDITFFNEV--ATNMAEKLDLPL 416

Query: 421 LRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVG-------GGSRDNFKGSS-- 467
             +  A LC  ++ +P+ +    +  R+R   +SR  +         GG R   K     
Sbjct: 417 ENLAGALLCLAQQQSPIKVEEVKIQPRERNERNSRNDRGDRGRRNERGGERSERKPRERN 476

Query: 468 --------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515
                    + + VG +   + + ++  +   + I+ + IG IR+    + V++      
Sbjct: 477 SRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDQHSTVQLPQNMPK 536

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKP-DFRGYKSSGFKSKNSQDGATKR 563
           D +D  ++     + + +     + P + RG + SG + +N      KR
Sbjct: 537 DVLDHFQKVFICKRPMGMTITQDQGPAEPRGERPSGDRKRNDGPRGDKR 585


>gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
 gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
          Length = 640

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 178/569 (31%), Positives = 278/569 (48%), Gaps = 51/569 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L       N+   
Sbjct: 17  ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNIDP 70

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  +VV
Sbjct: 71  TVKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L +S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + K + KD   V I S      DI  ++   A   + +A+V  L       AI+
Sbjct: 191 PEAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAII 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 250 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVV 368
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++ 
Sbjct: 310 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIP 368

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
               P+ E + ER     A ++ Q    L+S   D+ +    LL K  P      E +AA
Sbjct: 369 EVELPNAELLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLTKMQPEDELDLETLAA 422

Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGR---------------DRFRDDSRAFKVGGGSR 460
             L++    R  +  PE   P                      DR   +SR  + G   R
Sbjct: 423 ALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARSDRGPRESRDSRDGDRPR 482

Query: 461 DNFKG---SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513
              +       + + VG     E R ++  +     I+ + IG I++  + + +E+    
Sbjct: 483 RERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTIELPKGM 542

Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             D +    RT  L+K + ++ LG  +P+
Sbjct: 543 PGDVLQHFTRTRILNKPMNMQLLGDAQPN 571


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 223/405 (55%), Gaps = 15/405 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P  
Sbjct: 23  AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ- 79

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGTP
Sbjct: 80  ---ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 136

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ PA
Sbjct: 137 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F  
Sbjct: 197 IRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFAR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+  
Sbjct: 257 TKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVER 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVW 369
           +  V++ ++  + E+ +HR GRTGRAGR G ++  +    + M R  ER  R+    +  
Sbjct: 317 ISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEMQL 376

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 377 ---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 416


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 528

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/507 (30%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + I +  I    V    +FV V
Sbjct: 472 FIIKKAKIKQSYIKNAEVYEGFSFVSV 498


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N       
Sbjct: 15  AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPG
Sbjct: 72  ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI
Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K    V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 196/344 (56%), Gaps = 9/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   LS+ G+   T +Q   L   L + D+L  AQTGSGKT+AF + +   L+  N
Sbjct: 12  LPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFAIGM---LMKIN 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            R+        L + PTRELA QV +E+     + +   V+++C GG+    +   L++G
Sbjct: 69  PRYFGVQG---LVMCPTRELADQVCKEIRKTARFLENIKVLSLC-GGMPFGPQIGSLEHG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGRL +H+R   L +  L  +VLDEAD MLD+GF D I  +++S+PKKR+ LM
Sbjct: 125 AHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVESTPKKRQTLM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  ++  +Q +   + + +      DI    V     D+  A+++ +RY   
Sbjct: 185 FSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYALMSAVRYQNP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVFC+T+         L +H     A+ G+L Q++R   L    +   R+ +ATDVA
Sbjct: 245 EQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNASCRILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ +++ VI+ + + + +   HR GRTGRAG KG+++ ++
Sbjct: 305 ARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLV 348


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/373 (33%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+++ GY   + +Q   +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 67  LPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDVN- 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                A  P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 126 -----ARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 180

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+++++ +F
Sbjct: 181 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALF 240

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y      V + SE R + +I  R +L A   + +A   IL      
Sbjct: 241 SATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYD 300

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  +   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 301 AMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 360

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 361 RGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 420

Query: 366 SVVWEPAPSVEAI 378
            +     P+V+ +
Sbjct: 421 RLEEMELPTVDEV 433


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N       
Sbjct: 15  AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPG
Sbjct: 72  ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI
Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K    V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N       
Sbjct: 15  AVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPG
Sbjct: 72  ---GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI
Sbjct: 129 RLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K    V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 189 KNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 249 KRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 452

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 199/346 (57%), Gaps = 6/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++  A+ + G+   + +Q A++   L  KDV+  A+TG+GKT AF + +   L   
Sbjct: 50  DLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILEQL--- 106

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P A+ I PTRELA QV  E E L       +AV  GG +++R+ R L+NG 
Sbjct: 107 -DSLEDCRDPQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQLRQLENGT 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++   L  +++  VVLDEAD MLD+GFR  IE I+   P+ R+ L+ 
Sbjct: 166 QLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPRNRQTLLL 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  LA++Y  + V ++   +      I+ R   +A  D+   + ++L+    +
Sbjct: 226 SATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESLLKREKPE 285

Query: 246 NAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            AI+FC T+    R  + L+ E+     A+ G+L Q+ER   LQ +RDG  +  +ATDV 
Sbjct: 286 QAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKFLVATDVV 345

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            RGID+  +  +++ ++  + ++ +HR GRTGR GR G++  FV+P
Sbjct: 346 GRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVP 391


>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 460

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 199/346 (57%), Gaps = 17/346 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T +QEA L   L  +DV   A+TGSGKT AFG+ L +++            
Sbjct: 19  LNELGYTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNSITVSQ------FV 72

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  + +   ++ +C GG ++  +   L +  HIVVGTP
Sbjct: 73  AQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQAIGPQLESLVHPPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R   L +  LK +VLDEAD MLD+GF +DIE ++  +P+ R+ L+FSAT    
Sbjct: 132 GRIQEHLRKGTLKLDELKVLVLDEADRMLDMGFSEDIEDVVSYTPQDRQTLLFSATYPDG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALS--DRDNAIVNILRYHGAKNAIV 249
           I  ++  +Q+  ++V I  E+    DI D R + +      R + +  +L  +   + +V
Sbjct: 192 IERISSKFQRQPLKVEIEGED----DIADIRQIFIEADKHQRLSLLAAVLYQYQPTSCVV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+         L       +AL+G+L Q++R   L    +G  RV +ATDVAARG+D
Sbjct: 248 FCNTKRDCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAARGLD 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           +  L LVI+ ELS +PE  +HR GRTGRAG  G++V  V PQ M R
Sbjct: 308 IKQLGLVINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQEMPR 353


>gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
          Length = 488

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 224/397 (56%), Gaps = 10/397 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  A+S+ GY  LT +Q   +   L  +D++ +AQTG+GKT AF L +   LL   +   
Sbjct: 26  ILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLASTSV 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL +APTRELA QV   L+     T +  A   GG+ +  ++ +L+ G  ++
Sbjct: 86  SPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTGVDLL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  K +N+  ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+FSAT
Sbjct: 146 VATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA++Y ++ + V +A  N   ++++ R   V   D+   +V +LR +     I
Sbjct: 206 FSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPLPQVI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R    R T++L     +  A+ G+ SQ ER   L+  + G  +  +ATDVAARG+
Sbjct: 266 VFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFR 361
           D+ +L  V++ ++  + E+ +HR GRTGRAG  G+++ +          ++++  +R F 
Sbjct: 326 DIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIKRQFE 385

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           +  VS+   P P  +A   R+  RI + P  L S  G
Sbjct: 386 KQTVSLERAPRPRRDADETRE-HRIARAPRALPSDTG 421


>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 685

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 172/547 (31%), Positives = 278/547 (50%), Gaps = 68/547 (12%)

Query: 19  GYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           G+   T +Q++ +   L+ E D +  AQTG+GKT AFGL L   +    DR    +    
Sbjct: 20  GFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPLIHKV---TDR---PTETQG 73

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L IAPTREL +Q+ ++LE  +AK    + V    GG  + ++  D++ GA +VV TPGRL
Sbjct: 74  LVIAPTRELCLQISKDLEA-FAKFDQQIKVVAVYGGTDIRKQITDIKRGATVVVATPGRL 132

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I  K +N+  ++ VVLDEADEML++GF++DI+ IL ++P  + + +FSAT+   +  
Sbjct: 133 VDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTKSVWLFSATMPKEVAA 192

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +AKNY  D + V +  +N+ + +I++    V   DR +A+  ++        +VFC TR 
Sbjct: 193 IAKNYMTDPLEVAMGHKNQSNENIEHIYYTVKERDRYDALKRLIDASPDIFGLVFCRTRN 252

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
             +   + LA+  +    L G+LSQ  R   +   R+   ++ +ATDVAARGID+ ++  
Sbjct: 253 ETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLVATDVAARGIDVDNITH 312

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRA-ERLFREANVSVVWEPA 372
           VI+  L  + EN  HRSGRT RAG++G S+ +I   +N + +A ER  R    + +   A
Sbjct: 313 VINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIKAIERQIRTTFKAALIPEA 372

Query: 373 PS---------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                      +  ++E + +     P FL +I  D +++    + K   + I+A F R 
Sbjct: 373 SEICGIQLNKLISKVKEIEVKENDIAP-FLPAIMADFEELSKEEVIK---KFISAEFNRF 428

Query: 424 ----HRAGLCAPEEITPVSLVSGR------------------DRFRDDSRAFKVGGGS-- 459
                RAG         +++ +GR                  DRF    R  +   G   
Sbjct: 429 IEYYDRAG--------DLNVSAGRGDREDRKDRAGNDRFDRKDRFERSDRGERSDRGERT 480

Query: 460 -------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  RD+   + +F +S+G +       L+ ++C S+G+N  SIG I V P+ +F E
Sbjct: 481 ERAPRADRDDANRTRFF-VSLGKRDGLNPGGLLRVICDSTGLNSGSIGRIDVMPNFSFFE 539

Query: 513 VSADGVD 519
             AD  D
Sbjct: 540 --ADKTD 544


>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 441

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 203/352 (57%), Gaps = 3/352 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+++  A+ E+GY   T +QE  +   L  +D+L +AQTG+GKT AF L +   L    N
Sbjct: 10  PEIL-RAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFAN 68

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL ++PTRELA Q+G  ++       +      GGV++  + ++L+ G 
Sbjct: 69  TSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQTQELRRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DHI+ K + ++ ++ +VLDE D MLD+GF  DI  I+   PK+R+ L+F
Sbjct: 129 EILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLPKERQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +P I  LA ++      V +A +N  +  ++     V    +   + +++R     
Sbjct: 189 SATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQLLAHLIRSREMS 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+ S  +  + L        A+ G+ +Q  R   L   ++G+ RV +ATDVAA
Sbjct: 249 QVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGKLRVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           RG+D+ +L  V++ EL ++PE+ +HR GRTGRAG KG+++ ++  +  R+ E
Sbjct: 309 RGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESRQHE 360


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 208/354 (58%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I +A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  +N+         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIDIDNNVIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P +
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++     +++   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G SV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEM 348


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 153/469 (32%), Positives = 249/469 (53%), Gaps = 26/469 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   + +Q A +   ++ KD++  AQTG+GKT AFG+ L   +   
Sbjct: 8   NLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPLIEKIDHR 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +           + IAPTRELA+QV  EL  +   + V V    GG  + R+ R L+N  
Sbjct: 68  SRNIQ------GIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQIRALKNHP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI    L + H+  +VLDEADEML++GF DDIE IL + PK R+ ++F
Sbjct: 122 QIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPKDRQTMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +  +   V + ++      I+   V V   ++ + +  +L      
Sbjct: 182 SATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRLLDVQSPD 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V      L    +    + G+LSQ +R + L+  +DG+  V +ATDVAA
Sbjct: 242 LAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           RG+D+  +  V + ++  +PE+ +HR GRTGRAGR+GM++ FV P+ M   +  E+  ++
Sbjct: 302 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVEQTTKK 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAG 419
             + +   P    EA   +  QR+  + +     +G+  + + V   LLA++DP ++ A 
Sbjct: 362 RMLPM--RPPTWDEAFEGQ--QRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEVTAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGS 466
            L++    +    + TPV +   R     +D SR  K  G    ++KGS
Sbjct: 418 ALKL----MTKEPDKTPVHISEERPLPHKKDHSRRGKPAG----SYKGS 458


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + +IVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + +++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATD+AARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDIAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
           [Arsenophonus nasoniae]
          Length = 615

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 179/586 (30%), Positives = 286/586 (48%), Gaps = 44/586 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   +           
Sbjct: 26  ALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLLHNIDI------TLK 79

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + E+      V V    GG     + R L+ G  IVVGTP
Sbjct: 80  APQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRALRQGPQIVVGTP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+SHL+ +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 140 GRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQTALFSATMPEA 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K    ++I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 200 IRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVR 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 260 TKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R     +     
Sbjct: 320 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKQPITEVEL 379

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQ-----GDEKK---MVDVLLAKH--DPEKIAAGFLR 422
           PS   + ER   +      F ++IQ     GD +K   ++  L+A    D E +A+  L+
Sbjct: 380 PSAAVLSERRQAK------FAENIQKQLESGDLEKYRALLTKLVANDELDMETLASALLK 433

Query: 423 IHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-------SRDNFKGSSWFSLSV 473
           + +    L  P +  PV         RD+ R     G         R +      + + V
Sbjct: 434 MAQGDRPLILPPD--PVRRAKREFNSRDERRRNNSNGASERSPRRERRDVGDMELYRIEV 491

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529
           G     E R ++  +   + I+ + IG I++    + +E+      + ++ L RT  L+K
Sbjct: 492 GRDDGVEVRHIVGAIANEADISSRYIGNIKLFASHSTIELPKGMPNELLNHLTRTRILNK 551

Query: 530 GIQLKYLGGEKPDFR---GYKSSG-FKSKNSQDGATKRFKR--FKG 569
            +Q++ LG  +P  R   G ++ G  + +  + G  +R +R  F+G
Sbjct: 552 PMQMQLLGEAQPFERRGNGQRNGGELRERGRRFGNERRSEREQFRG 597


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANQLLEKYDATDIAAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437


>gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
 gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
          Length = 645

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 171/563 (30%), Positives = 274/563 (48%), Gaps = 51/563 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L       N+  S  
Sbjct: 19  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL------NNIDSSL 72

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELAVQVG  + ++     G+ V    GG     + R L+ G  +VVGT
Sbjct: 73  KAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQLRALRQGPQVVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+  
Sbjct: 133 PGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDNHQTALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + K + KD   V I S      DI  ++   A   + +A+   L       AI+F 
Sbjct: 193 AIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAFGRKTDALTRFLEAEDFDAAIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+ 
Sbjct: 252 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++    
Sbjct: 312 RISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 371

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-------EKIAAGF 420
            P+ E + ER     A ++ Q       ++  + +    LL+K  P       E +AA  
Sbjct: 372 LPNAELLGERRLAKFAAKVQQ------QLESSDLEQYRALLSKMQPAEDELDIETLAAAL 425

Query: 421 LRIHRA--GLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSSW-------- 468
           L++ +    L  P +    +    R  F  RDD R  +   G R+  +G           
Sbjct: 426 LKMAQGERPLIVPAD----APQRPRREFKERDDRRGDRPERGPREKSEGGERPARRERRD 481

Query: 469 ------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGV 518
                 + + VG     E R ++  +     I+ + IG I++    + +E    +  D +
Sbjct: 482 VGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDIL 541

Query: 519 DLLRRTVKLDKGIQLKYLGGEKP 541
               RT  L+K + ++ +G   P
Sbjct: 542 QHFTRTRILNKPMNMQLIGDAVP 564


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
 gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
          Length = 650

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 173/560 (30%), Positives = 277/560 (49%), Gaps = 46/560 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A++++G+   +++Q   + P L   +KD++  AQTG+GKT AFGL +   L +  +    
Sbjct: 19  AIAKKGFETPSAIQSLTI-PHLLTTDKDIIAQAQTGTGKTAAFGLPIIQMLTSRRN---- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ + PTRELA+QV +EL   +    + +A   GG S+  + R L+ G  IVVGT
Sbjct: 74  --IPQAIVLVPTRELALQVTQEL-ISFNTHDLSIAPIYGGASMTEQLRRLKKGIDIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHIR   L++S +  +VLDEADEML++GF +DIE I+ +    +R+L+FSAT+  
Sbjct: 131 PGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRVLLFSATMPD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHGAKNAI 248
            I  LA+NY  +   + + S   QH   D    +   V   D+ +A+  I+        I
Sbjct: 191 RIAALARNYMHEPDLLKVES---QHVTTDLTNQIYFEVREGDKFDALTRIIDVEPEFYGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR         L E  +    L G++SQ +R   L   +  +  + +ATDVAARGI
Sbjct: 248 VFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILVATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L  VI+  L  + ++ +HR GRTGRAG +G ++  I  +  R+   L R     + 
Sbjct: 308 DVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFLKRTIKADIK 367

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            E  P+   I      +I +D   LD+I      G+   M   LL  + PE   +  LR 
Sbjct: 368 LEQLPTPADIIATKRNKIKED---LDAIVESESYGECTGMAAELLESYPPEVALSALLR- 423

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               L    E++  S          + R+  V      + KG +   L+ G++   + R 
Sbjct: 424 ----LAFKNELSESSY--------PEIRSIDV------DRKGKARIFLAFGARDGYDTRK 465

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQLKYLGGEKPD 542
            + +L +  G++   I  +RV  D +F  V  D  + + RT+ KL  G  +  +  + P 
Sbjct: 466 TVRLLKQECGLSDHDIDDVRVMEDFSFATVPFDQAEKVVRTLNKLSHGRPIAEISKDSPS 525

Query: 543 FRGYKSSGFKSKNSQDGATK 562
            R   S G +S   ++  T+
Sbjct: 526 AR--TSGGRQSHRRRESDTR 543


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 191/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + +IVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 144/394 (36%), Positives = 213/394 (54%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLIHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I  ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAINDVIAYTPPQRQTLLFSATYPV 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q++ V V +  +  +   I+          R   ++++L ++   +A+VFC
Sbjct: 191 GIEQISARVQREPVNVEV-EDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASAVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + V W 
Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKVKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSANTLLEPEMVTLCIDGGRKAKI 398


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVLA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  +AK G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFAKYGINQRLNVALLIGGVSFDDQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +     RV +A  +     +  R V     D D   V  +++R 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLRDLIRA 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ ++ +
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGKLQLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 209/382 (54%), Gaps = 20/382 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY + T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E ++  
Sbjct: 14  IKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTREL VQV  E   +     +  A   G     +++ +L    HIVVG
Sbjct: 72  ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FSAT+ 
Sbjct: 128 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ+D V + +A+E  + + I +  + +   +++  + ++L      +AI+F
Sbjct: 188 DEMQDLIKRYQEDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 243

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   + +L         + G L Q+ER  A+   + G++R  IATDVA RGID+
Sbjct: 244 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 300

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N+++  +
Sbjct: 301 ENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNITIEKK 360

Query: 371 PAPSV-------EAIRERDAQR 385
             P++       EA R++  +R
Sbjct: 361 RKPTIIEVKASEEAFRKKQQKR 382


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 199/340 (58%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L       S  
Sbjct: 58  KTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLA------SGQ 111

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    +   A    + V    GG     +   L+ G  +VVGT
Sbjct: 112 KTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRRGVDVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L+ S L+++VLDEADEML +GF DD+E+IL+  P++R++++FSAT+ P
Sbjct: 172 PGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPP 231

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G +  I+F 
Sbjct: 232 EIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFA 291

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 292 RTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVD 351

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR G +V FV P+
Sbjct: 352 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPR 391


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439


>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 528

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498


>gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
 gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
          Length = 476

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 206/376 (54%), Gaps = 8/376 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I + +   GY + T VQE ++   L++KD++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCEKVKLE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +      P AL + PTRELAVQ+  ++  +     +      G   V  ++  L+   
Sbjct: 67  NKK------PQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQLKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR  DHI    + +S ++ +++DEAD+ML++GF D +E ++ S PK R  ++F
Sbjct: 121 HIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDRVTMLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGA 244
           SAT+   I  L   Y  D  ++ I  +N   +DI  +      SDR  +++N + Y    
Sbjct: 181 SATLEERIEKLCVKYMNDPEKIEIDKKNVT-TDIIEQEYYDVESDRKFSLLNKIIYTERP 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC+T+A V      +    F   AL G + Q++R   +Q  + GR    +ATDVA
Sbjct: 240 DSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+ E+ +  E+ +HR GRTGRAG KG S+  + +   R+ + +     
Sbjct: 300 ARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSIEEYIG 359

Query: 365 VSVVWEPAPSVEAIRE 380
            SV  +  PS E + +
Sbjct: 360 YSVPKKEIPSEEEVNQ 375


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 211/387 (54%), Gaps = 20/387 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A++E GY   T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E
Sbjct: 9   NLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL I PTRELA+QV  E   +     +  A   G     +++ +L    
Sbjct: 69  ENK------PQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L F
Sbjct: 123 HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K YQ D + + +A+E  + + I +  + +   +++  + ++L      
Sbjct: 183 SATMPEEMQDLIKRYQDDPIVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPD 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC+T+  V   + +L         + G L Q+ER  A+   + G++R  IATDVA 
Sbjct: 239 SAIIFCNTKNQVDELSDLLQ---VNTAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAG 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR- 361
           RGID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N   + R  E + + 
Sbjct: 296 RGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDMEDMLKI 355

Query: 362 ---EANVSVVWEPAPSVEAIRERDAQR 385
              +     + E   S EA R++  +R
Sbjct: 356 TIEKKRKPTIIEVKASEEAFRKKQQKR 382


>gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 635

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 169/557 (30%), Positives = 272/557 (48%), Gaps = 30/557 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+  GY   + +Q   +   L   DVL  AQTGSGKT AFGL L   + AE     
Sbjct: 25  ILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLLHNIKAE----- 79

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +P  L +APTRELAVQV   L E+     GV V    GG     + R L+ G  +VV
Sbjct: 80  -IKSPQILVLAPTRELAVQVAEALTEFSKYIKGVNVVALYGGQRYDLQLRALRQGPQVVV 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   LN S L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+
Sbjct: 139 GTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPAVHQTALFSATM 198

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   + I S      DI     +V    ++ A+V  L       AI+
Sbjct: 199 PEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGMRKNEALVRFLESEDFDAAII 258

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R + L+ ++DGR  + IATDVAARG+D
Sbjct: 259 FVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNILIATDVAARGLD 318

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++  
Sbjct: 319 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKNIERTMKLTIPE 378

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423
              P+ E + +R   +          ++  +  +   LL K  PE+      +AA  L++
Sbjct: 379 VKLPNSELLSQRRLTKFSTK--VSKQLESHDLDVYRALLTKLQPEEGFDMETLAAVLLKM 436

Query: 424 ---HRAGLCAPEEIT-PVSLVSGRDRFR-DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
               R  +  P+ +  P  +    +R R +  R  +     R +      + + VG    
Sbjct: 437 AQGERPLIMPPDPVPRPTKIHHNSERRRINGERPVR---RERRDVGDMELYRIEVGRDDG 493

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLK 534
            E R ++  +     I+ + IG I++    + +E+      + +    RT  L+K + ++
Sbjct: 494 VEVRHIVGAIANEGDISSRCIGNIKLFSSYSTIELPKSMPREILSHFTRTRILNKPMNMQ 553

Query: 535 YLGGEKP---DFRGYKS 548
            LG  +P     RGY S
Sbjct: 554 LLGDAQPFESRGRGYAS 570


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 223/405 (55%), Gaps = 15/405 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S   A+ ++  P  
Sbjct: 3   AVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN--ADLNQVKPQ- 59

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTRELA+QV    + +  A  G  V    GG    ++   L+ G H+VVGTP
Sbjct: 60  ---ALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVGTP 116

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ PA
Sbjct: 117 GRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMPPA 176

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F  
Sbjct: 177 IRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIFAR 236

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+  
Sbjct: 237 TKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDVER 296

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVW 369
           +  V++ ++  + E+ +HR GRTGRAGR G ++  +    + M R  ER  R+    +  
Sbjct: 297 ISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEMQL 356

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              PSV+A+ +    R +      +++ G +  M   LL +++ E
Sbjct: 357 ---PSVDAVNDTRVARFMTR--ITETLAGGQIDMYRDLLQRYEAE 396


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 10/381 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+P+ I + L E GY   + +Q A + P ++E +D+L  AQTG+GKT AF L L S    
Sbjct: 16  NLPEAILKTLVELGYETPSPIQAASI-PIIQEGRDLLGQAQTGTGKTAAFALPLLS---- 70

Query: 65  ENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +  P    P  L +APTRELA+QV    +         V    GG S   + R L+ 
Sbjct: 71  ---KIDPTKKHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKR 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +PK R++ 
Sbjct: 128 GTQIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIA 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +A  Y  +   + I ++    + I  R  +V  + + +A   IL    
Sbjct: 188 LFSATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIVNRNQKLDAFTRILEVED 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+ +     + L+       AL+G++ Q +R N ++ ++ G   + IATDV
Sbjct: 248 FDGVIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + R+ 
Sbjct: 308 VARGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIERDT 367

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
           N  V     PS   + ++ A+
Sbjct: 368 NSVVEPMDVPSASDVNQKRAE 388


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 165/541 (30%), Positives = 266/541 (49%), Gaps = 37/541 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+   I +A+ + G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ + 
Sbjct: 4   KQFEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIPIL 63

Query: 60  STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
                  ++  P    + AL + PTRELA+QV  E+  L   K  +      GG S+ R+
Sbjct: 64  -------EKIDPDDKSVQALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+GTPGR  DH+R   L   +LK V+LDEADEML++GFRDDIE IL+   
Sbjct: 117 IKALKKGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVK 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ + FSAT+  +I  L K YQ D   V +  +     +I+     V   ++   +  
Sbjct: 177 GKRQTIFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEVNRRNKLEVLSR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K +IVFC+TR  V   T  L    + V  + G L+Q +R   +   ++G    
Sbjct: 237 LIDIYNPKLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIET 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            +ATDVAARGID+ D+E V + ++  + E  +HR GRTGR GR+G +  FV+ + +  + 
Sbjct: 297 LVATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEI-YQL 355

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK-HDP 413
           +++ + A   +  +  PSV  + E   + +L     +  +     E K+++ L+ + +  
Sbjct: 356 KKIEKYAKTKIERKQVPSVSDVEESKMELLLDRVSEILENENLAQETKLIEELVEEDYVS 415

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA  L+                LV  R+      +    G    +   G     +++
Sbjct: 416 IDIAAALLK----------------LVMDREEQEGAEKVESFGDTGAE--PGMVRLFINI 457

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           GSKQ      ++  +   + I    +G I +    TFVEV     +  +  +K+ K  Q+
Sbjct: 458 GSKQNVSPGDVVGAIAGETSIPGNVVGLIDIYDKFTFVEVPR---EYAKEVLKIMKNNQI 514

Query: 534 K 534
           K
Sbjct: 515 K 515


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 233/421 (55%), Gaps = 22/421 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   + +QE  +   L  KDVL  AQTG+GKT AF L L +    E        
Sbjct: 20  AIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLARTQNE------VR 73

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P  L +APTRELA QV   +E +   ++ V VA   GG     + R L+ G   VVGTP
Sbjct: 74  EPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGPQWVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR   L +  ++AVVLDEADEML +GF DD++++LD  P+KR++ +FSAT+   
Sbjct: 134 GRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALFSATMPKQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ + ++   + I S+   +  I+ +  LV   D++ A++ I         +VF  
Sbjct: 194 IKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSEFDAMMVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +       +  H  +  AL+G+++Q +R  A+  ++ G+  + +ATDVAARG+D+  
Sbjct: 254 TKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAARGLDVER 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369
           +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+   M    ER+ R+    +  
Sbjct: 314 ISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVTRKKIQQIEL 373

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH---DPEKIAAGFLR 422
             A  V A R RD  ++      L+ I+G +    KK+   +LA+    DP ++AA F +
Sbjct: 374 PTAKEVNAKR-RDQFKVRA----LEHIEGRDIEIFKKIASEILAEQPALDPIELAAAFAQ 428

Query: 423 I 423
           +
Sbjct: 429 M 429


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 206/355 (58%), Gaps = 9/355 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q + ++L++ G+   T +Q+  +   L  +D++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L          SA   L +APTRELA+QV  EL  L       + V  GG S+ ++  
Sbjct: 61  NKLDKNQ------SAIQGLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIE 114

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            ++ N   IVVGTPGR+ D +R K L++ HLK +VLDEADEML++GF +D++ I+ ++P 
Sbjct: 115 WIKRNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I +LA  + K+   V I ++      I+   +     ++ +    +
Sbjct: 175 SRQTLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIKCRDDEKFDIFTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVFC T+  V    + L+   +    + G++ QQ+R++ +   R G+  + 
Sbjct: 235 LDVQMPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+  +  V + ++S +PE+ +HR GRTGRAG +GMS+ FV P  M
Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEM 349


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 202/348 (58%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +  E
Sbjct: 7   NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 542

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 248/507 (48%), Gaps = 26/507 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +A+ ++G+   T++Q   +   L  + +++  AQTG+GKT AFGL L        D   P
Sbjct: 18  DAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLPLL-------DLVDP 70

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            S  + AL + PTRELA+QV  E+        V +    GG S+ ++ R L+ G  IVVG
Sbjct: 71  VSRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQLRRLKQGVQIVVG 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  K LN++ +  ++LDEADEML++GF D++E IL  +   +R L+FSAT+ 
Sbjct: 131 TPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTNPDKRTLLFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +Y +    + +  E    +  +     V  SD+  A+  I+    +   +VF
Sbjct: 191 DKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKASDKFEALCRIIDIEDSFYGLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V      L +  +    L G++SQ +R   L   +     + +ATDVAARGID+
Sbjct: 251 CRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINILVATDVAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            +L  VI+  L  +PE  +HR GRTGRAG +G ++  I  +  +R   + +     +   
Sbjct: 311 NNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLMFIRKITKTDIKKS 370

Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426
             P V  I +   ++I +D   +F   I           L +    P +I A  L +   
Sbjct: 371 QLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSPSQILAALLSLSFN 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
               P     ++ V G DR             S+ +  G++   +++G K +   R L+ 
Sbjct: 431 DDLNPNSYGEIAEVRGGDR-------------SQIDHHGTARLFVALGKKDRITPRQLID 477

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +L   S +  + IG I++  + +FV V
Sbjct: 478 LLTSRSPVRPKQIGDIQIMENFSFVTV 504


>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 528

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/521 (30%), Positives = 263/521 (50%), Gaps = 31/521 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL + G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + + L +++     
Sbjct: 20  ALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHI+VGT
Sbjct: 75  --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P   + ++FSAT+ P
Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + T+   Y ++  RV++A  N     ++    +V   ++D A+  +L       +IVF 
Sbjct: 193 MVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+   F+  AL G++ Q +R   +  +++G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    ++    
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTIERVTKSTMEEIQ 372

Query: 372 APSVEAIRE----RDAQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            P  + + E      A  +  D  F  LD+      K+ + L  + D   IAA  L+  +
Sbjct: 373 LPHRDQVAECRLAALAAELQADKEFVALDAFTDLINKLQETL--EIDATTIAAMLLK-RQ 429

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-----------GSRDNFKGSSW--FSLS 472
            G        P  +++  +R ++        G           G R  +    +  + L 
Sbjct: 430 QGKRPLFYKGPDPMIAAMERAKNRRSDRGERGERGGRGDRPERGERRQYNNDDFDTYQLE 489

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG +Q  + + ++  L    G  + SIGAI++ P  T+V++
Sbjct: 490 VGREQGVQVKDIVGALANELGFTKGSIGAIKLAPGHTYVQL 530


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 196/335 (58%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  +N    PA    AL
Sbjct: 20  GFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  IIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V  +++ + +  ++     + +IVF  T+  V 
Sbjct: 194 KFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 658

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 176/569 (30%), Positives = 277/569 (48%), Gaps = 51/569 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   +        P  
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELA+QV + L ++     GV V    GG     + R L+ G  +VVGT
Sbjct: 74  KAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  
Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           AI  + + + K+   V I S      DI      V    ++  A+V  L       AI+F
Sbjct: 194 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + IATDVAARG+D+
Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++   
Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVERTMKLTIPEV 373

Query: 371 PAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGF 420
             P+ E + ER     A ++ Q       ++  +  M   LLAK  PE+      +AA  
Sbjct: 374 QLPNAELLGERRLAKFAAKVGQ------QLESSDLDMYRALLAKLQPEEEFDLETLAAAL 427

Query: 421 LRI---HRAGLCAPEEI-TPVSLVSGRD-------RFRDDS----RAFKVGGGSRD---- 461
           L++    R  +  PE    P    + RD       R R+DS    R+    GG R     
Sbjct: 428 LKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRNDSRREPRSDNRDGGERPARRE 487

Query: 462 --NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515
             +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 488 RRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 547

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           + +    RT  L+K + ++ LG  +P  R
Sbjct: 548 EMLSHFTRTRILNKPLNMQLLGDAQPHER 576


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 273/533 (51%), Gaps = 36/533 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRI---- 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D+     +P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 165 DK--SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415
            +     P+V+ +   D +++     F DSI    E K +D+          A   P E 
Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------SRDNF 463
           IAA      ++G    +E+ P        R   D       G              RD+ 
Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRGDRGDRGSRFDRDD- 575

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +  + + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D
Sbjct: 576 ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 628


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/382 (35%), Positives = 211/382 (55%), Gaps = 20/382 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQIEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D + + +ASE  + + I +  V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDDPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +V  + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKVSKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V++  +
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKK 356

Query: 371 PAPSV-------EAIRERDAQR 385
             P+V       EA R++  +R
Sbjct: 357 RKPTVIEVKANEEAFRKKQQKR 378


>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 510

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 213/378 (56%), Gaps = 8/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   I  A++++GY + T +Q   +   L  +D++ +AQTG+GKT +F L + + L + 
Sbjct: 7   NLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPMLNLLQSG 66

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            N   SPA  P+  L + PTRELA+QV   ++       +  A   GGV +  + R+L+ 
Sbjct: 67  ANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQTRELRA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH++ K +N+S ++ ++LDEAD MLD+GF  DI+ IL   P +R+ L
Sbjct: 127 GVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLPSQRQSL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT S  I  LA    ++ V V +A  N     I +    V    +   + ++++   
Sbjct: 187 MFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRERKRELLAHLIKSQD 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+   SR    L        A+ G+ +Q +R+ AL   + G  RV +ATDV
Sbjct: 247 LQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+D+ +L  V++ EL +NPE+ +HR GRTGRAG KG +V ++ ++   + +  E+L 
Sbjct: 307 AARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAELLKGIEKLL 366

Query: 361 R---EANVSVVWEPAPSV 375
           +   E+ V   +EP   V
Sbjct: 367 KFKLESKVVPGFEPETPV 384


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 220/426 (51%), Gaps = 17/426 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  KLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
             +      P  L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  QRK------PQLLVLAPTRELAIQVAEAFQ-VYASFSHKIKVLPVYGGQSYDNQIRQLKR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P +R+  
Sbjct: 126 GVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAERQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + + Y KD   V IAS+    S I  R   VA   +  A+  I+    
Sbjct: 186 LFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIMEVER 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +       L+   + V  L+G++ Q  R   +  ++ G   + +ATDV
Sbjct: 246 FDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  I    +R    + +  
Sbjct: 306 VARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFSIEKTT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHDPEKIA 417
              +   P PS+  I E    R  Q    +D+ Q D  + +  L+      A+  PE + 
Sbjct: 366 KQPIEVMPIPSISEINETRLSRFKQS--VIDATQDDSIETLIPLVEMIKEEAEASPEVLM 423

Query: 418 AGFLRI 423
           A  L+I
Sbjct: 424 AALLKI 429


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 168/566 (29%), Positives = 271/566 (47%), Gaps = 25/566 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + L   GY   T +Q   +   L   DVL  AQTG+GKT AF L L S +    ++ 
Sbjct: 15  VLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNK- 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127
                P AL + PTRELA+QV    +  YA+      V    GG  +  + R L+    +
Sbjct: 74  -----PQALVLCPTRELAIQVAEAFQ-TYARGVDNFHVLPIYGGADMRNQLRALKQNPQV 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGR+ DH+R   L++S LK +VLDEADEML +GF +DI++IL+ +PK ++  +FSA
Sbjct: 128 IVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKDKQTALFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +   YQKD V++ I + + +   I+         D+ + +  IL        
Sbjct: 188 TMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRILEIEDWNAI 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  TR      ++ LA   +   ALSGE++Q++R + L  M+ G+  + IATDVAARG
Sbjct: 248 IIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIIIATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +  VI+ ++  +     HR GRTGRAGR G ++       QR    + R     +
Sbjct: 308 IDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDIERATKSEL 367

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           +  P PS E + E  A         ++ I+ D+      ++     E      L I  + 
Sbjct: 368 IDYPMPSAEKLGEHRAAAF--KSTVVEHIEADKLDYFKAMITSWVDEG-EHSLLDIAASM 424

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-----RDNFKGSSWFSLSVGSKQKAEAR 482
               +E  P+ L    +      R  +   G      RD    +  + L VG + +AE  
Sbjct: 425 ALMAQEDKPLQLPKDPEPRPRRDREDRPTRGESRNRRRDLDYAAITYRLDVGRRDRAEPG 484

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-----DLLRRTVKLDKGIQLKYLG 537
            ++  +    GI  + I  I ++ + T V++  DG+     + L++T    + + L+   
Sbjct: 485 SIVGAIANEGGIEGKFINNIDIKENFTLVDLP-DGMPTEIFEQLKKTRVKGRPLNLRVWK 543

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKR 563
            E P  +  K  G +  + +DG  ++
Sbjct: 544 DEAP--KDGKDRGNRRPSRRDGGDRK 567


>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
 gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 201/341 (58%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +A+   GY   + +Q A +   L   D+L  AQTG+GKT AF L L S L L++N+    
Sbjct: 42  KAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLSKLDLSQNE---- 97

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P  L +APTRELA+QV    +   A   G  V    GG  +  + R L+ G H+VVG
Sbjct: 98  ---PQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLRQLKRGVHVVVG 154

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   LN+++LK++VLDEADEML +GF DD+E+IL+ +P+ R+  +FSAT+ 
Sbjct: 155 TPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPETRQTALFSATMP 214

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A NY +DA  + IAS  +   +I+    +V+ +++ +A+  IL        I+F
Sbjct: 215 REIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSGTNKLDALTRILEVEPFDGMIIF 274

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +    L+G+++QQ R   ++ ++  +  + IATDVAARGID+
Sbjct: 275 VRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIVIATDVAARGIDV 334

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             +  V++ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 335 ERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPR 375


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 156/509 (30%), Positives = 259/509 (50%), Gaps = 18/509 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   P  
Sbjct: 90  ALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAELSDLHGPQR 149

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   L +APTRELA+QV      +        V    GG S   +   L+ GA +VVGTP
Sbjct: 150 STRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKRGAQVVVGTP 209

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L +  +  VVLDEADEML +GF +D+E IL  +P ++++ +FSAT+  A
Sbjct: 210 GRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEKQVALFSATMPKA 269

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ Y +D   + + ++    ++   R + V    + +A+  +L        IVF  
Sbjct: 270 IRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIVFVR 329

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A+       L    +   A++G++ Q  R   +  +R+G+  + +ATDVAARG+D+  
Sbjct: 330 TKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAARGLDVER 389

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVVW 369
           + LV++ ++  + E+ +HR GRTGRAGRKG ++ F+ P+   + R  E+  R+    +  
Sbjct: 390 ISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQMRV 449

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAGFLRIHRAG 427
                V   R+ +  + +++ +  + + G  +++V+   ++HD +  +IAA    I + G
Sbjct: 450 PTTDEVNQTRKDNFAQQIEETIESEDL-GLFRELVERYESEHDVDAVEIAAALAVIAQNG 508

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-----NFKGSSWFSLSVGSKQKAEAR 482
                E  P      RDR R D      G G R+     +  G   + L+VG + +    
Sbjct: 509 RPFLVEDLPEMPQRKRDRERRD------GDGPRNRRSPGDEAGMKTYKLAVGHRDRVVPG 562

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
            ++  L    G+N   IGAI ++P  T V
Sbjct: 563 AVVGALTHEGGLNGSQIGAIDIRPTFTLV 591


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 163/535 (30%), Positives = 273/535 (51%), Gaps = 38/535 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L +    LA  
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPI----LARI 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D+     +P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 165 DK--SVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415
            +     P+V+ +   D +++     F DSI    E K +D+          A   P E 
Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--------------SRD 461
           IAA      ++G    +E+ P        R   D       G                RD
Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRD 576

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           + +  + + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D
Sbjct: 577 D-ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 630


>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
 gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 490

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 135/343 (39%), Positives = 198/343 (57%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +  F+    
Sbjct: 49  LNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 104

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  +A+   ++ +C GG  + ++   L +  HIVVGTP
Sbjct: 105 --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 161

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    
Sbjct: 162 GRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPEE 221

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+   R  IA +N + S I+ R        R   ++ IL ++   + +VFC+
Sbjct: 222 IEQISARVQRQPQRFEIA-DNVEESAIEQRFYETTKEQRLPLLIAILSHYQPASCVVFCN 280

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +
Sbjct: 281 TKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKE 340

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           L LV++ EL+ +PE  +HR GRTGRAG +G++V    PQ M R
Sbjct: 341 LALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNR 383


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 261/518 (50%), Gaps = 41/518 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ + G+   T +Q   +   +   D++  +QTG+GKT AFG+ +     A+
Sbjct: 10  NLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVLEKTNAK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           N       A  ++ + PTRELA+QV  EL+     K G+ +    GG  + R+   L  G
Sbjct: 70  N------KAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIALSKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+GTPGR+ DH+  + L +     V+LDEADEMLD+GFRDDIE IL S P+ R+ + 
Sbjct: 124 AQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQTVF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+     +L K YQ     + + SE      I+     +    +  A+   L  +  
Sbjct: 184 FSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLDMYDP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V   T  L    +   A+ G+++Q +R+  +   R+G   + IATDVA
Sbjct: 244 KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-RAERLFRE 362
           ARGID+  +++V + ++  + E+ +HR GRTGRAG+ G +  FV  +++ + R  + + +
Sbjct: 304 ARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKLRDIQRYTK 363

Query: 363 ANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           AN+  +  P+   VE  +E          + LD ++         +L + D EK A    
Sbjct: 364 ANIKRMQVPSLADVENTKE---------TIMLDKVKE--------VLKEKDLEKYAG--- 403

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRF------RDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
               A     +EIT + + +   +       R+  +   +  G+ + +  +  F +++G 
Sbjct: 404 ---MAESLISDEITSLDVAAALLKIMLASEKREQEQKADI-SGNINKYSMTRLF-INIGK 458

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           K    A   +  +   +GIN   IG I++    +FVEV
Sbjct: 459 KNGVRAGDFVGAITGETGINGSLIGDIKILDAFSFVEV 496


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 206/358 (57%), Gaps = 13/358 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I +A+  +GY   T +Q   +   +   DV+ +AQTG+GKT  F L + + L+    +  
Sbjct: 31  IQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNRLMPLATENT 90

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ + + L+ G  +V
Sbjct: 91  SPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQTLRRGVELV 150

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K +N+  ++ +VLDEAD MLD+GF  D++ I++  PK R+ L+FSAT
Sbjct: 151 IATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPKTRQNLLFSAT 210

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRYHGAK 245
            SP I  LAK++      + +A  N    +I  + V+ AL    D+  A+ ++++     
Sbjct: 211 FSPEIQKLAKSFMVSPTLIEVARRNATSENI--KQVIFALDSEEDKRMAVCHLIQSKALS 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+   +R  + L +      A+ G+ +Q ER+ +L+  + G   V +ATDVAA
Sbjct: 269 QVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVTVLVATDVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362
           RG+D+ DL  VI+ +L + PE+ +HR GRTGRAG KG +  FV+     +R ER  ++
Sbjct: 329 RGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVV-----KRDERALKD 381


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTSRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEM 348


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 254/521 (48%), Gaps = 36/521 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + GY N T +Q   +   L+ +DVL  AQTG+GKT AF L + S +  + +     
Sbjct: 44  EALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILSRIDCDKN----- 98

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL + PTRELA+QV    + +        V    GG     + + L+ G H+VVGT
Sbjct: 99  -YPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKRGVHVVVGT 157

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI+   L +  L  +VLDEADEML +GF DD+E+IL+ +P  R++ +FSAT+  
Sbjct: 158 PGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVALFSATMPS 217

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  D   + I S++     I  R + V    +  A+  IL        I+F 
Sbjct: 218 VILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHHKLEALTRILEAEPFDGVIIFV 277

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR +    ++ L    +   ALSGE+ Q +R   +  +++G+  + +ATDVAARG+D+ 
Sbjct: 278 RTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVAARGLDVE 337

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVV 368
            +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +     +M R  ER  R    S+ 
Sbjct: 338 RVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIERAVRR---SID 394

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAGFLRIHRA 426
               PS E I ++   +  Q    + S +  E    +V+     HD   + A       A
Sbjct: 395 RMELPSAEMINDKRIAKFKQQISDVISTEDLEVFSDLVEQYCRDHDSTMLQAA------A 448

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------WFSLS 472
            L    + T   LVS  +   D SR+   G   R + + SS               F + 
Sbjct: 449 ALAFMVQGTTPLLVSA-EPLHDTSRSQSQGRQKRTDRRSSSRGDSLPFSQQDGTETFRIE 507

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG     +   +   +   +G+   S+G I +Q + + V++
Sbjct: 508 VGKVHGVKPGNIAGAIINETGLPADSVGRISIQEEYSTVDL 548


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 13/380 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + + +Q A +   L  +D+L  AQTG+GKT AF L + S L     +    
Sbjct: 22  KAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILSRLDFAQRK---- 77

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV      +  A  G  V    GG    ++   L+ G H+VVGT
Sbjct: 78  --PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLSALKRGVHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+ R++ +FSAT+  
Sbjct: 136 PGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQSRQVALFSATMPA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y  D   V IAS+    ++I  R   V+   + +A+  IL        I+F 
Sbjct: 196 AIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALTRILEVEPFDAMIIFA 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L        A++G++ Q +R   +Q ++DG+  + +ATDVAARG+D+ 
Sbjct: 256 RTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+   M R  ER  R+    + 
Sbjct: 316 RISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAIERATRQPIEEMQ 375

Query: 369 WEPAPSVEAIRERDAQRILQ 388
               PSV+A+ ++   R ++
Sbjct: 376 L---PSVDAVNDQRVSRFME 392


>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 642

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 175/569 (30%), Positives = 275/569 (48%), Gaps = 51/569 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        
Sbjct: 17  ILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------D 69

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P   AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  +V
Sbjct: 70  PTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPADHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + K + KD   V I S      DI  ++   A   + +A+V  L       AI
Sbjct: 190 MPEAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 249 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 309 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 368

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
               P+ E + ER     A ++ Q    L+S   D+ +    LLAK  P      E +AA
Sbjct: 369 EVELPNAELLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLAKMQPEDEMDLETLAA 422

Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGR---------------DRFRDDSRAFKVGGGSR 460
             L++    R  +  PE   P                      DR   ++R  + G   R
Sbjct: 423 ALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDRAPRENRESRDGDRPR 482

Query: 461 DNFKG---SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513
              +       + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 483 RERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGM 542

Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             D +    RT  L+K + ++ LG  +P+
Sbjct: 543 PGDVLQHFTRTRILNKPMNMQLLGDAQPN 571


>gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
 gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
          Length = 469

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +        DR +P   
Sbjct: 29  LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL + PTRELA QV  E+  L  A+  + V    GGV    +   L+NGAHIVVGTP
Sbjct: 82  AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R+ L+FSAT    
Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFSATYPDG 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I +LA  + +D   V +A+   QHS   I  R   V   D+ + +  +L +   +++I F
Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIAQRWYEVGARDKVDTVAKLLAHFRPESSIAF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+
Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360
            DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++           + +Q RA + F
Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348


>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 524

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 159/522 (30%), Positives = 265/522 (50%), Gaps = 37/522 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + G+   + +Q  ++   L+  DV+  AQTG+GKT+AFG  + +++  E+ +  
Sbjct: 15  ILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVLNSISNESKKVK 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 ++ +APTRELA+QV +EL  +   T   +    GG S+ R+ + L+ G  IV+G
Sbjct: 75  ------SIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSLKKGIDIVIG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  K LN+SH++ +VLDEADEML++GF DDIE IL S  + RR L+FSAT+ 
Sbjct: 129 TPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRRTLLFSATMP 188

Query: 191 PAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I     K  +KDA  V IA  +   S ++     V   ++  ++  +L       AI+
Sbjct: 189 SEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVLSVDEPTRAII 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V      + E  F    + G+++Q  R N L   ++      +ATDVAARGID
Sbjct: 249 FCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIPFLVATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVV 368
           + D   VI+ +L  + E+ +HR GRTGRA +KG +  FV P+      +R+ + +   + 
Sbjct: 309 VKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFS-SLKRIQKISKSKIN 367

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGFLRIH 424
               P+++ + +     IL D     ++  D       +V  L +K D   + A  +   
Sbjct: 368 KRQLPTMDDVLKAKFDSILND--VEQTLSKDNYNTFIPLVKDLESKFDLTNVTAALM--- 422

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
              +   +EI+          + DD+        +  N    +   L+VG K +   + L
Sbjct: 423 --SMLYNDEISY--------DYDDDN--------TESNSLDYTRIFLNVGRKDRLNPKIL 464

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRRTV 525
           +  L  ++ IN+  +G+I +     FV+++ D V DL+   +
Sbjct: 465 LEFLDNNANINKSQVGSIDILDKFAFVDIATDRVGDLMDNCI 506


>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
 gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
          Length = 515

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 206/383 (53%), Gaps = 9/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   + +Q   + P L   DV+  AQTG+GKT AF L + + +   
Sbjct: 14  NLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAKIDCR 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
             +         L +APTRELA+QV    +  YA+   G  VA   GG     + + L+ 
Sbjct: 74  KKQTQ------CLVLAPTRELAIQVAEAFQS-YARHLPGFQVAPIYGGTDYRTQLKQLER 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++VGTPGR+ DH+R   L + +L  +VLDEADEML +GF DD+E+++   P+KR++ 
Sbjct: 127 GAQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIA 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  +A +Y +D   + +  +    + I  R  +++ + + + +  IL    
Sbjct: 187 LFSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASKLDGLTRILEVED 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ + +     L    F   AL+G+++Q  R   +  ++ GR  + +ATDV
Sbjct: 247 FDGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  V++ ++  +PE  +HR GRTGRAGRKG ++       QR    + R  
Sbjct: 307 AARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMIERTT 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
              +     P+   + +  A++I
Sbjct: 367 GQPIELMRLPTASDVADAKAEKI 389


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 192/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E       +   AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEE------ATIQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K+   V IA++      +D   + V   ++ + +  ++     + +IVF  T+  V 
Sbjct: 194 QFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/344 (38%), Positives = 194/344 (56%), Gaps = 8/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY  +T VQ   L   L  +DV+V A+TGSGKT AF L L +T+   N RF   
Sbjct: 30  DALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLATI---NPRFFGV 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            A     + PTRELA QVG+E+  L ++   + + +  GGV +  +R  L +GAHIVVGT
Sbjct: 87  QA---FVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDSLSHGAHIVVGT 143

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH++   LNI  +K +VLDEAD MLD+GF D I+ I+   P  R+ L+FSAT   
Sbjct: 144 PGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDRQTLLFSATYPQ 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++++ Q++   V +       + I+     V   +R   +  +  ++   NA+VFC
Sbjct: 204 DIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALFEHYRPANAVVFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +  A+ G+L Q+ER   L  + +    V +ATDVAARG+D+ 
Sbjct: 264 NTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVLVATDVAARGLDIK 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DLE+V++ EL  +PE  +HR GRTGRAG  G +   V+P    R
Sbjct: 324 DLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPR 367


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEM 348


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 197/345 (57%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  ALSE+GY   T +Q   +   L  KDV+ +AQTG+GKT  F L +   LL   +   
Sbjct: 65  ILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQRLLPMASASA 124

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ +   L+ G  I+
Sbjct: 125 SPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQTDALRRGVEIL 184

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  P +R+ L+FSAT
Sbjct: 185 VATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAQRQTLLFSAT 244

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----A 244
            SP I  LA +Y K  V + +A  N  + ++      V    +  A+V++LR       +
Sbjct: 245 FSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQAAVVHLLRQRAEQGLS 304

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF +++   SR  + L        A+ G+ +Q ER   L+  ++G     +ATDVA
Sbjct: 305 KQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNGTIDALVATDVA 364

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFV 347
           ARG+D+ D+  VI+ +L  + E+ +HR GRTGRAG  G  +S+FV
Sbjct: 365 ARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFV 409


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score =  224 bits (570), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 240/443 (54%), Gaps = 18/443 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +   +++   G+   T +QE  +   +  KD++  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +           L IAPTRELA+QV  EL  L     V +    GG  + R+ R L+N  
Sbjct: 68  DGNVQ------GLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNRP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGRL DHI  + L + ++  ++LDEADEML++GF +DI+ I+ S P  R+ L+F
Sbjct: 122 QIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ + K    V I S+     +I+   V     ++ + +  +L     +
Sbjct: 182 SATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V    K L    +    + G+LSQ +R + L+  + G+  + +ATDVAA
Sbjct: 242 LAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFRE 362
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG++V FV P+ M   +  ER  ++
Sbjct: 302 RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTKK 361

Query: 363 ANVSVVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              ++V  P  + EA+  ++R A   L +    +++ GD +     +L KHD   + A  
Sbjct: 362 KMEALV--PPTANEAVLGQKRVAMEQLLEMTEKNNL-GDYRDFATQMLEKHDAVDLIAAA 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
           L+        PE+I PVS+   R
Sbjct: 419 LKTMTK---EPEDI-PVSISEER 437


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M     R+  E       
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366

Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
              +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA  L+
Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 422

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           +    L    + TPV +   R
Sbjct: 423 M----LAKEPDKTPVHITEER 439


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M     R+  E       
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366

Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
              +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA  L+
Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 422

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           +    L    + TPV +   R
Sbjct: 423 M----LAKEPDKTPVHITEER 439


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  + V +   + + + I+          R   ++++L ++   + +VFC
Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELVI+ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368

Query: 371 PAPSV 375
           PA  V
Sbjct: 369 PAEQV 373


>gi|119469633|ref|ZP_01612502.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
 gi|119446880|gb|EAW28151.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
          Length = 466

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 205/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 15  LPAGLVDNLSTLGYAHMTPVQAQSLPPVLEGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 75  FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P+ R+ L+F
Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPQNRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK    +   + +  E  + +   Y   +     R   +  +L     +
Sbjct: 189 SATFPRAIEAIAKRVLSNPEMIKVEEEQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ +P+  +HR GRTGRAG+KG++  +     Q +  ++      
Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368

Query: 366 SVVWEPAPS 374
               EP PS
Sbjct: 369 DFEPEPMPS 377


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 258/523 (49%), Gaps = 28/523 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L+  GY   T +Q   + P +  +D+L  A TG+GKT AF L L   L    D  +   
Sbjct: 71  SLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHRL---TDDRTGDH 127

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV   +       G  V    GG  + R+ R L  G  +VV TPG
Sbjct: 128 GPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQGVDVVVATPG 187

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DH+    L +  L  VVLDEADEMLD+GF +DI+ IL+ +P+KR+ ++FSAT+ P +
Sbjct: 188 RALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFSATLPPRM 247

Query: 194 TTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+ + +D VR+ I   A E      +   + +V  + +  A+  IL     ++AIVF
Sbjct: 248 DQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVESPRSAIVF 307

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR  V +    L    ++  +L G +SQ++R   ++ +R   A + +ATDVAARG+D 
Sbjct: 308 CRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLVATDVAARGLDF 367

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++  + S P++ +HR GR GRAGR+G+++ +      R  + + R     +  E
Sbjct: 368 EQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVTRQRIAVE 427

Query: 371 PAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
             P+V  +  R     +  LQ+ L  D ++   + +V+ L  + DP +IA   +++    
Sbjct: 428 KVPTVADLHARRLELTRAALQESLLEDDLE-RFRVVVETLTDEFDPMEIALAAVKLAHDA 486

Query: 428 LCAPE------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSSWFSLSVGSKQK 478
              P       ++ P +   G    RD       G G R+            L VG+ + 
Sbjct: 487 SFVPNDADDIPDLPPATDARGERTGRD-------GAGRRERRPRPASGGMARLFVGAGRG 539

Query: 479 AEARW--LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           A  R   L+  +   + ++ + IGAI +    + VEV     D
Sbjct: 540 AGVRPQDLVGAITGETRLSGRDIGAIEIAQRFSLVEVPDGAAD 582


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/335 (38%), Positives = 190/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E           AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQ------AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEM 348


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 167/544 (30%), Positives = 267/544 (49%), Gaps = 54/544 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+ + GYV  + +Q A +   +   DV+  AQTG+GKT AF L   S L    
Sbjct: 76  LPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRL---- 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +    P  L +APTRELA+Q     E   +  G V  + I GG     +   L+ GA
Sbjct: 132 --DTTERHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGA 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++SHL+ +VLDEADEML++GF++D+E IL  +P  R++ +F
Sbjct: 190 QVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVALF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  D     + SE R   +I    ++V+  ++ +A+  IL      
Sbjct: 250 SATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYLMVSHRNKLDALTRILEVTEFD 309

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T++        L    F+  A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 310 AMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 369

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  + E+ +HR GRTGRAGR G ++ FV P     R  RL +   
Sbjct: 370 RGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTP-----RERRLLKNIE 424

Query: 365 VSVVWEPA----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKH------ 411
            +    P     P V+ + E       ++  F    +  + K VD+   L+ ++      
Sbjct: 425 RATKSHPNEIQLPGVDEVNE-----ARKNKFFTSITEARKGKQVDIFRELVTEYAEANDV 479

Query: 412 DPEKIAAGFLRIHRAGLCAPEE--ITPVSLVSGRD-RFRDDSRAFKVGGG---------S 459
            P  IAA       A L   E   +  +     R+ R RDD    +   G         +
Sbjct: 480 TPTDIAAALA----AKLQGREAFYVQEIQEPQRRERRTRDDWDRGEQDSGVHRPFSERFN 535

Query: 460 RD-------NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
           RD       N K  + + +SVG +Q+     ++  L    G+N +  G I +  + + VE
Sbjct: 536 RDAPKVTDRNGKELAVYRVSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVE 595

Query: 513 VSAD 516
           + AD
Sbjct: 596 LPAD 599


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 196/337 (58%), Gaps = 2/337 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I +AL + GY + T +Q   +   L  KDV+ +AQTG+GKT  + L  L S L   N   
Sbjct: 26  ILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQSLLYYANASM 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV  ++      T +  AV  GGV +  +   L+ GA I+
Sbjct: 86  SPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTGILRAGAEIL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DHI+ K +N+     +VLDEAD MLD+GF  D++ I++  PKKR+ L+FSAT
Sbjct: 146 IATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKKRQNLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA ++    V V +A +N    ++      +  +D+++A+  +LR H  +  +
Sbjct: 206 FSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLLRLHKREQVL 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+A  SR  + L +   +  A+ G+ +Q ER  AL   ++G   V +ATDVAARG+
Sbjct: 266 IFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNITVLVATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +L  VI+ +L    E+ +HR GRTGRAG  G ++
Sbjct: 326 HIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAI 362


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/335 (39%), Positives = 194/335 (57%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL    TL  E  R   A+   AL
Sbjct: 20  GFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGL---PTL--EKIRIEEATIQ-AL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GAHIVVGTPGRL D 
Sbjct: 74  VIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDL 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI  +  
Sbjct: 134 IKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGV 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    V IA++      +D   + V   ++ + +  ++     + AIVF  T+  V 
Sbjct: 194 QFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVD 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 254 ELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 314 YDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEM 348


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 221/399 (55%), Gaps = 27/399 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY  L  +Q    +  +   D+   A+TG GKT++F L +   LLA  D  +    
Sbjct: 131 LEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEKLLASPDT-TRGRR 189

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTP 132
           P  L +APTRELA QV RE    + K G  +A  CI GG     +RR  +NG  +VVGTP
Sbjct: 190 PRVLVMAPTRELASQVWRE----FQKVGPSLASTCIYGGTDYEPQRRAFRNGLDVVVGTP 245

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKRRMLMFSAT 188
           GRL DH+    L +++L+ +VLDEAD ML++GF D +E +L    + + +K +M++FSAT
Sbjct: 246 GRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQMILFSAT 305

Query: 189 ISPAI-TTLAKNYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
           + P I +TL K   +  V   +  E NR  + + + A+      R+  I ++++ Y GA 
Sbjct: 306 MPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIADVVQVYSGAH 365

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              ++F  T+   +     L + L Q V  L G+++Q++R  +LQ  RDG+ R  +ATDV
Sbjct: 366 GRTMIFTQTKRDANEL--ALNDTLKQEVQVLHGDIAQKQRELSLQCFRDGKVRCLVATDV 423

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P+++LV+  E   + E+ +HRSGRTGRAGRKG  +     N +++   + R A
Sbjct: 424 AARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLREVERRA 483

Query: 364 NVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGD 399
            +S     AP    I     RDA R      FLDS+  D
Sbjct: 484 GISFTRIGAPQPADIIKASARDATR------FLDSVTND 516


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 214/376 (56%), Gaps = 9/376 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + +  A+ + G+   + +Q+  +   L  KD++  AQTG+GKT AFGL + + +   
Sbjct: 7   NFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMINMM--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  S   A+ I PTRELA+QV  EL      +G+  A   GG S + + R++ + A
Sbjct: 64  ----NGNSGVEAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRNI-DRA 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D ++GK ++I     VVLDEADEMLD+GF DDI+ I    PK+R+ L+F
Sbjct: 119 SIIVATPGRLIDLLKGKKIDIKP-SFVVLDEADEMLDMGFLDDIKEIFTYLPKERQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  LA+N  K+   + +      +S I     +V   +RD+A++ +  +   +
Sbjct: 178 SATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRLFDFKNPE 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC T+  V R +  L         L G++ Q++R   ++  + G   V IATDVAA
Sbjct: 238 KSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  + E+ +HR GRTGRAG++G+++ ++  +  R  +++      
Sbjct: 298 RGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKIQHVTGG 357

Query: 366 SVVWEPAPSVEAIRER 381
            +  +  P++++++E+
Sbjct: 358 KMEAKVIPNIDSVKEK 373


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGIDHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 135/377 (35%), Positives = 207/377 (54%), Gaps = 7/377 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L + L  +
Sbjct: 10  NLNPYLLQNLDTLGYTEMTPIQAQSLPFMLEGKDVIAQGKTGSGKTAAFGLGLLANL--D 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             RF   S    L + PTRELA QV  E+  L  +   + V    GGV    +   L++G
Sbjct: 68  VKRFRVQS----LVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+
Sbjct: 124 AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQNLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A     + +      +  + S   +   +    DR  A+  +L  H  
Sbjct: 184 FSATFPPQIKSIADRIMNNPIMTKAEDKIEETSITQHFYKVDDFEDRLKALQILLLKHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L    F V AL G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESTVIFCNTKRVTQEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+ ELS +PE  +HR GRTGRAG+KG+++ +          ++    +
Sbjct: 304 ARGLDIDSLDAVINFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKETNSFAQIEDYMS 363

Query: 365 VSVVWEPAPSVEAIRER 381
           +++  EP PS + + E+
Sbjct: 364 LTLNDEPLPSEDHLSEQ 380


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 201/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL     +  E
Sbjct: 7   NLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  ENTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P+KR+ L+F
Sbjct: 121 HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEKRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++     +
Sbjct: 181 SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L     +   + G+L Q +R   ++  ++G+  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 218/391 (55%), Gaps = 13/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I +A+++ G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +  + 
Sbjct: 73  LPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRINVKK 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 133 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 186

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS+L  +VLDEADEML +GF++DIE IL+ +P  +++ +F
Sbjct: 187 QIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALF 246

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y KD   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 247 SATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFE 306

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 307 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
            ++    P+V+ + E   ++      F DSI
Sbjct: 427 ELIEMDLPTVDEVNESRKEK------FADSI 451


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 218/391 (55%), Gaps = 13/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I +A+++ G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +  + 
Sbjct: 73  LPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSRINVKK 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 133 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 186

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS+L  +VLDEADEML +GF++DIE IL+ +P  +++ +F
Sbjct: 187 QIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADKQVALF 246

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y KD   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 247 SATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEFE 306

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 307 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 366

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 367 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 426

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
            ++    P+V+ + E   ++      F DSI
Sbjct: 427 ELIEMDLPTVDEVNESRKEK------FADSI 451


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
          Length = 531

 Score =  223 bits (569), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 257/518 (49%), Gaps = 46/518 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + GY   T +Q+ ++   L   DV   A TG+GKT AFG+         N    
Sbjct: 15  IIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIELCQPANRNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  + + P+RELAVQVG EL  L   K G+ +    GG  + R+ + L  G  I++
Sbjct: 75  ------TIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGVQIII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI+ K L +  +  VVLDEAD+MLD+GFR+DIE IL   PK+R+ ++ SAT 
Sbjct: 129 GTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVILSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +++ +QK+ + V +  +      I+   + V    + + ++ +L ++  +  I+
Sbjct: 189 PPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQPQRTII 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+ +V   +  L    F    L G ++Q +R   +   R G+  + IATDVAARGID
Sbjct: 249 FCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + +++LV + +   + E  +HR GRT RAGR G ++ FV P+   R      R+   S  
Sbjct: 309 VEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYR-----LRDVRRSTR 363

Query: 369 WEPAP-SVEAIRERDAQRILQDPLFLDSIQ--GDE---KKMVDVLLAK-HDPEKIAAGFL 421
            EP P  +  +RE   ++        D++   GD    + M++  LA+  DP  +A   L
Sbjct: 364 AEPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIEEKLAEGADPVALATSLL 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            I  AG+   +E              DD   +             +   LS G +     
Sbjct: 424 MIA-AGIATEKE--------------DDLEKY---------LGEQAVVRLSAGRQDGILV 459

Query: 482 RWLMPMLCRSSGINRQS-IGAIRVQPDLTFVEVSADGV 518
           R ++  + R+SG N Q+ IG IR+    T+++V    V
Sbjct: 460 RDIL-QIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSV 496


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 168/549 (30%), Positives = 271/549 (49%), Gaps = 45/549 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +A+++ G+V  T +Q   + P L  +DV+  AQTG+GKT AFGL L + + A+
Sbjct: 56  GLPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAIVDAD 115

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   A  AL +APTRELA+Q    +E   A+T  +V V + GG     +   L+ G
Sbjct: 116 E------KAVQALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKRG 169

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L++S ++ +VLDEADEML +GF +D+E I  S+P  R   +
Sbjct: 170 AQVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTAL 229

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT+ PAI  +A+ + KD V+V ++ E+     I     +V    +  A+  +L     
Sbjct: 230 FSATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQ 289

Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                   A  AIVF  TR  V   +  L+   F+   +SG+++Q ER   ++ ++ G  
Sbjct: 290 HIAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKSGSL 349

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G S+         R
Sbjct: 350 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPREHTR 409

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDP 413
             R+ +     +     PS  A+ E  A+R+L+           G  +++++ + A  D 
Sbjct: 410 LRRIEKLTGTPMEEVAIPSPAAVSEFRARRLLEGVGARVERGRLGMYRELLEQMAASLDV 469

Query: 414 EKIAAGFLRIHRAGLCAPE-----------------------EITPVSLVSGRDR---FR 447
           E +AA  +     G   P                        E    S  +GRD+    +
Sbjct: 470 EDVAAALI-AQAVGDEGPAPRAESDRRGRGRARREEGLDESGEFVGASFEAGRDKDRPLK 528

Query: 448 DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
                 +  GG R      + + + VG K + +   ++  +    GI+ + IG I + P 
Sbjct: 529 GGRDGARRRGGGRAVAGPGTRYRVEVGRKDRVKPGSIVGAIAGEGGIDGRDIGHIDIFPT 588

Query: 508 LTFVEVSAD 516
            + V+++AD
Sbjct: 589 FSLVDITAD 597


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M     R+  E       
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 364

Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
              +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA  L+
Sbjct: 365 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 420

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           +    L    + TPV +   R
Sbjct: 421 M----LAKEPDKTPVHITEER 437


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 236/441 (53%), Gaps = 24/441 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M     R+  E       
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 364

Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
              +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA  L+
Sbjct: 365 PLQAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAAMLK 420

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           +    L    + TPV +   R
Sbjct: 421 M----LAKEPDKTPVHITEER 437


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/357 (36%), Positives = 203/357 (56%), Gaps = 10/357 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI     ++L   GY  +T VQE  +   L+ +D++V A+TGSGKT  FG+ L + +   
Sbjct: 10  NISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATFGIGLLNKI--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N RF  A A   L + PTRELA QVG E+  L ++   + V +  GG     +R  LQ+G
Sbjct: 67  NPRFFGAQA---LVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH+VVGTPGR+ DH+    L I  +  +VLDEAD MLD+GF D ++ I+   PK R+ L+
Sbjct: 124 AHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYH 242
           FSAT    I  ++++ Q +   V +  ++  H +  I+     +   +R   ++ +  ++
Sbjct: 184 FSATYPDNIQKISRSIQANPAMVQV-DDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHY 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             KNA VFC+T+   +     L EH  +  AL G++ Q+ER   L    +G   V +ATD
Sbjct: 243 RPKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPVLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           VAARG+D+  L +V++ EL  +PE  +HR GRTGRAG  G++  ++ ++   R  ++
Sbjct: 303 VAARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLRQI 359


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 190/624 (30%), Positives = 304/624 (48%), Gaps = 75/624 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+
Sbjct: 43  GLPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDAD 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                      AL +APTRELA+Q  + +E   A+   +  V + GG     +   L+ G
Sbjct: 103 ERDVQ------ALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKRG 156

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L++S+++ +VLDEADEML +GF +D+E I  + P +R   +
Sbjct: 157 AQVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRLTAL 216

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT+  AI  +A+ + KD V+V +++E+     I     +V    +  A+  +L     
Sbjct: 217 FSATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLATRAQ 276

Query: 244 --------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                   A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ ++ G  
Sbjct: 277 HIARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTGAL 336

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++ F  P+   R
Sbjct: 337 DVLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPREHGR 396

Query: 355 --RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQG------DE 400
             R E+L    ++  V  P+P+  A+ E  A+R+L+      +   LD  +G       E
Sbjct: 397 LRRIEKLT-GTDMEEVAIPSPA--AVSEFRARRLLEGIGARIERGRLDMYRGLLAELGQE 453

Query: 401 KKMVDVLLA-------------KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
             + D+  A             + + ++  AG +R     L    E    S  +GRD+  
Sbjct: 454 TSVEDIAAALVASAVGDEGPAPRVEKDRRGAGKVRREER-LDESGEFVGASFEAGRDK-- 510

Query: 448 DDSRAFKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
              R  K G        G R      + + + VG K + +   ++  +    GI+ + IG
Sbjct: 511 --DRPIKGGADGARRRAGGRSAPGSGTRYRVEVGKKDRVKPGSIVGAIAGEGGIDGRDIG 568

Query: 501 AIRVQPDLTFVEVSAD--GVDLLRRTVKLDKGIQLKYLGGEKP------DFRGYK----- 547
            I + P  + V+++AD  G  L R +     G QL+    E P      D  G+      
Sbjct: 569 HIEIYPTFSLVDITADLSGEQLSRISKGYVSGRQLRIRVDEGPGRYPRGDRDGFDRDART 628

Query: 548 ---SSGFKSKNSQDGATKRFKRFK 568
              S G + +   D   KR  RF+
Sbjct: 629 RGGSGGQREERPGDRGDKRPHRFE 652


>gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
          Length = 528

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 151/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E + A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENVVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDENNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 472 FIVKKAKVKQSYIKNAEVYEGFSFVSV 498


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 208/382 (54%), Gaps = 20/382 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E ++  
Sbjct: 10  IKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTREL VQV  E   +     +  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ+D V + +A+E  + + I +  + +   +++  + ++L      +AI+F
Sbjct: 184 DEMQDLIKRYQEDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   + +L         + G L Q+ER  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N+++  +
Sbjct: 297 ENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNITIEKK 356

Query: 371 PAPSV-------EAIRERDAQR 385
             P++       EA R++  +R
Sbjct: 357 RKPTIIEVKASEEAFRKKQQKR 378


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 204/365 (55%), Gaps = 14/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPS 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  + V +   + + + I+          R   ++++L ++   + +VFC
Sbjct: 191 GIEQISARVQRQPLNVEVGDTDEEPA-IEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELVI+ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMV-RAHTIEDYLQIKLKWT 368

Query: 371 PAPSV 375
           PA  V
Sbjct: 369 PAEQV 373


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 812

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 188/335 (56%), Gaps = 11/335 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ERGY + T VQ     P +  +D++V ++TG+GKT AFGL L   + A+  R     
Sbjct: 43  AIAERGYTHPTPVQAKAFQPAMEGRDLIVRSKTGTGKTAAFGLPLLEKIPADERRVR--- 99

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+QV  EL  L    GV VA   GG S+ ++   L+ G  I+VGTPG
Sbjct: 100 ---ALILCPTRELALQVADELRALGKYKGVKVAAIYGGASMKQQEDALEEGTPIIVGTPG 156

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L +      VLDEADEML+ GF +++  ILD  PK R++L+FSAT+   I
Sbjct: 157 RVFDHIGRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKNRQVLLFSATVPTDI 216

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVF 250
             L   Y  +A  + ++ +      I +  +   +SD   +   ++ +L      NAI+F
Sbjct: 217 QNLIARYTTNAETLLLSGDVFTVEHIHH--IRYDVSDAFPKPRNLIYVLEKAEPPNAIIF 274

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR   +  T VL  + F    L+G+L Q+ER   +  ++ G     +ATD+AARGID+
Sbjct: 275 CNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIAARGIDI 334

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             LE VI+  L  +P   LHR GRTGR G KG ++
Sbjct: 335 SGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAI 369


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 164/515 (31%), Positives = 264/515 (51%), Gaps = 29/515 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L   N R     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKL-DLNQR----- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAH+VVGTP
Sbjct: 74  KPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAHVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D V V++A +N     +  +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373

Query: 370 EPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                V   R      E +A++   +   LD      +K+   L    DP  +AA  L+ 
Sbjct: 374 PLRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKR 428

Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478
               R      E+  P+     RD+ +      + G     NF    W  + L VG +Q 
Sbjct: 429 QQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQG 485

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 486 VQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 127/351 (36%), Positives = 193/351 (54%), Gaps = 9/351 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  G+   T +Q   +   L+ +DV+  AQTG+GKT AFGL +   +  +N       
Sbjct: 15  AINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   E+  L       V V  GG  + R+   L+    IVVGTPG
Sbjct: 72  ---ALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALKGHPQIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHIR   L + H+K +VLDEADEML++GF DDIE I+  +PK+R+ L+FSAT+   I
Sbjct: 129 RILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQTLLFSATMPAQI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +D  +V I ++      ID   V V   ++ + +         +  IVFC T
Sbjct: 189 KRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   +K L    ++   L G+L+Q  R+  +Q  +  +  + +ATDVAARGID+  +
Sbjct: 249 KRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAARGIDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361
             V + ++  +P+  +HR GRTGRAG+ G+S+ F  P  M   R  E+L +
Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEKLTK 359


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 169/552 (30%), Positives = 269/552 (48%), Gaps = 44/552 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +AL+ +G+   T +Q A+  P L    +D++  AQTG+GKT AFGL +         R  
Sbjct: 15  DALTSKGFTAPTPIQ-ALTIPRLLSGTRDIVGQAQTGTGKTAAFGLPVIEAAEEGARRVQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L +APTRELA+QV  E++ L     + V    GG ++H + + L+ G  +VVG
Sbjct: 74  ------SLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQLKALRQGVDVVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L I  L   +LDEADEM ++GF DD+  IL S+   RR LMFSAT+ 
Sbjct: 128 TPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASANADRRTLMFSATMG 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVL--VALSDRDNAIVNILRYHGAKNA 247
             +  +A+ +  D   V +  E    SD    R V   +A SDR  A+  ++        
Sbjct: 188 GEVMAIAREFMGDFDVVRVKPEV---SDAPLTRQVFHEIADSDRFEALCRVIDARPDFYG 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  TRA        L +  +    + G+L+Q +R   L   R+ +A + +ATDVAARG
Sbjct: 245 LVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATILVATDVAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+PDL  V++  L  +P+  +HR+GRTGRAG++G+++ +I  N  R+   + +   + +
Sbjct: 305 IDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLMYIAKSTGIDI 364

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSI-----QGDEKKMVDVLLAKHDPEKIAAGFLR 422
             EP P +E +     ++++ +   L++I      G    M   LL     E++ A  LR
Sbjct: 365 AKEPLPRIEDVIHSKKRKVVDE---LNAILEAEGHGAYLAMAGELLHDRPAEEVVAALLR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                    EE+    + SG  R         VG   R    G +  + ++G       +
Sbjct: 422 S-----AFGEEL----VESGYRRIE------PVGPAGR----GRADMTCALGRAHGMNPK 462

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL--KYLGGEK 540
             +  +  ++ + + +I  +RVQ D T   V A   D +   V   +G  L  +     K
Sbjct: 463 RFVDFIASAANVKQWAIQHVRVQNDRTTFTVPAAEADRVMERVNSREGETLVTRDESRRK 522

Query: 541 PDFRGYKSSGFK 552
           P  R +   G+K
Sbjct: 523 PPGRKFPQKGWK 534


>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 465

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 137/362 (37%), Positives = 199/362 (54%), Gaps = 8/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY  +T +Q A L   L  +D++  A+TGSGKT AF LAL S L A   RF     
Sbjct: 23  LEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GAHIVVGTPG
Sbjct: 79  --AMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEHGAHIVVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P +R  L+FSAT    I
Sbjct: 137 RIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTLLFSATYPEGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T L++ + +D   + +A E      I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 TKLSRQFLRDPKEIKLA-EQHDARKIRQRFYEVTEDERLHAVGQLLNHYRPASTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL+   F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   + +     V W+P  
Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIEQAQGREVEWQPLA 375

Query: 374 SV 375
           S+
Sbjct: 376 SL 377


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/352 (36%), Positives = 202/352 (57%), Gaps = 10/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+V  T +Q A +   L   D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLNKLKLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPI 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + ++  R+++A ENR  + +D +  +V   ++D A++ +L       +IVF  
Sbjct: 194 VKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLLETEDTDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   ++ ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           +  V + ++  + E+ +HR GRTGRAGR+G ++ ++  N   M R  ER+ +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTIERVTK 365


>gi|307941464|ref|ZP_07656819.1| dead/deah box helicase domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307775072|gb|EFO34278.1| dead/deah box helicase domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 409

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/259 (43%), Positives = 168/259 (64%), Gaps = 6/259 (2%)

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           ++LSGELSQ++RS AL  M+ G ARVC+ATDVAARGIDLP+L+LVIHA+L +    LLHR
Sbjct: 1   MSLSGELSQEQRSAALTAMKTGAARVCVATDVAARGIDLPNLDLVIHADLPTGKAALLHR 60

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           SGRTGRAGRKG SV ++P   +R AE   + A V V W+ AP+ + IR +D +R+ + P+
Sbjct: 61  SGRTGRAGRKGTSVLMVPFPRRRAAEHTLKFAGVKVTWKGAPTADDIRAKDKERLFEAPV 120

Query: 392 FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL--VSGRDRFRDD 449
                + ++  +   L+ KHDPEK+AA F++++++ L APEE++  S   + GRD     
Sbjct: 121 LNTEFEPEDLAIARELMEKHDPEKLAAAFVKLYQSRLPAPEEVSEASEENIHGRDSGSRG 180

Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
            R  ++    R  F    WF LS+G K +A+ RWL+PM+CR+  + ++ +GAI++    T
Sbjct: 181 GRVAEI----RGKFDEGVWFRLSLGHKHRADPRWLLPMICRAGHVTKKEVGAIKIFQTET 236

Query: 510 FVEVSADGVDLLRRTVKLD 528
             E+S +  +    T+K D
Sbjct: 237 RFEISGEHAERYAATLKRD 255


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score =  223 bits (568), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 270/522 (51%), Gaps = 47/522 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A+ + G+   T +Q+  +   L  +DV   AQTG+GKT AF + L   +  E
Sbjct: 11  NISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEKI--E 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++ S  S    + ++PTREL +Q+  E   L  Y K   V+ V  GG ++ R+  +L+ 
Sbjct: 69  PEKCSVQS----IVLSPTRELTIQISEEFNRLLKYRKDIRVLPVY-GGQAIERQLHELKK 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HI++GTPGR+ DH++   L++S +K VVLDEAD+ML++GFR+D+E IL  +P +R+ +
Sbjct: 124 GVHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQTI 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  ++K++QK    V I         I+ + + V   D+   +  ++  + 
Sbjct: 184 LFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCRLIDINS 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  +++FC+T+ +V   +++L    +    L G++ QQ+R   +   R G   + IATDV
Sbjct: 244 SDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362
           AARGID+ D+++V + ++  + E  +HR GRTGRAG+ GMS  FV P+ + +   R+ ++
Sbjct: 304 AARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKL--RMIKK 361

Query: 363 -ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAK-HDPEK 415
            A V++V    P+   +     +++L     + SI  +E        V+ L+ + +   +
Sbjct: 362 IAKVNIVRIAIPNAADVENSRIEKVLDR---VKSIINEEDIGLYIPAVERLMEEDYTLSE 418

Query: 416 IAAGFLRIH---RAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           I+A  L+I     +G   P EE  P                     G      G   F +
Sbjct: 419 ISAALLKIQLEGSSGKVQPGEEFEP---------------------GDTGAEPGMVRFFV 457

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           ++G  +       +  +   + I    IGAI +  D +FVE+
Sbjct: 458 NIGKNKGVRPSDFVGAIAGEAEIPGNEIGAINIMKDFSFVEI 499


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 201/349 (57%), Gaps = 2/349 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I  AL+E+ Y   T +Q A +   L   D+L +AQTG+GKT AF L +L       N   
Sbjct: 13  ICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANASA 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ +  +       +   V  GGV+++++  +L+ G  IV
Sbjct: 73  SPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNKQTAELRAGCEIV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + T GRL DH++ K +N+S ++ VVLDEAD MLD+GF DDI  I+   PK R+ L+FSAT
Sbjct: 133 IATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQMLPKPRQTLLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +PAI  LA+++      V +A++N  +++++   + +    +   +  ++        I
Sbjct: 193 FAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKRELLERLIVDLNMNQVI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ S  + ++ L        A+ G+ SQQ R + L   + G  RV +ATDVAARG+
Sbjct: 253 VFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELRVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+ +L  V++ E+ +  E+ +HR GRTGRAG  G+++ ++ +  Q+  E
Sbjct: 313 DIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMYE 361


>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
 gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
          Length = 528

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 251/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTNEDKRMLFFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AKN+ K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKNHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKARLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 472 FIVKKARVKQSYIKNAEVYEGFSFVSV 498


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 216/399 (54%), Gaps = 31/399 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I +AL+E GY   T VQ   +   +  +D++VS+QTGSGKT AF L       +E D   
Sbjct: 12  IIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFASEGDQPQ 71

Query: 68  -------------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                              RF PA  P  L + PTRELA+QV    +   A    V AV 
Sbjct: 72  TGKTPNQEAQSARSRGDRPRFKPAQ-PKMLVLTPTRELALQVTTSTDKYGAFMKRVKAVS 130

Query: 109 I-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           I GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+GF D
Sbjct: 131 ILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFID 190

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV- 226
           DIE I+ ++P+ R+ ++FSAT+   +  +AK   KDA+ + IA    +H +I      V 
Sbjct: 191 DIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHENIKQCVHFVD 250

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            LS ++  + ++LR      A+VF +T+         L    F   AL G++ Q  R+  
Sbjct: 251 DLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRT 310

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L  +R G+ RV +ATDVAARGID+P +  V++ +L   PE+ +HR GRTGRAGR G++V 
Sbjct: 311 LDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRAGRNGIAVS 370

Query: 347 VI--PQNMQ-RRAERLFRE-ANVSVV--WEPAPSVEAIR 379
           ++   ++M  +R ER  ++   V V+  +EP  S  A R
Sbjct: 371 LVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPR 409


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
 gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
          Length = 579

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 200/349 (57%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           EA+   G+V  T VQ      +L P   E D++  AQTG+GKT AFGL L    L + D 
Sbjct: 2   EAVDALGFVQPTGVQLETIPLLLGP---ETDLVALAQTGTGKTAAFGLPL----LEKTDS 54

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126
            S  S   AL +APTREL +Q+  EL+  YAK   G+ +    GG S+ ++ + L+NG  
Sbjct: 55  ASRKSQ--ALILAPTRELCLQITSELQ-AYAKFIKGLSIVAVYGGASIQQQAKALKNGGQ 111

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D I  K  +IS +   VLDEADEML++GF +D+  IL  +PK +   +FS
Sbjct: 112 IIVATPGRMKDMISRKLADISSIGYCVLDEADEMLNMGFYEDLVDILSHAPKDKSTWLFS 171

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  +A+++      V + + N   + + +    VA  DR  A+  +   +    
Sbjct: 172 ATMPNAVARIARDFMHQPAEVTVGTRNEAIASVQHEYYTVAGRDRYPALRRLADANPGLF 231

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++FC T+    +  + L E  +   AL G+LSQQ+R   +   R  + ++ +ATDVAAR
Sbjct: 232 SVIFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAAR 291

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           GID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++ QRR
Sbjct: 292 GIDVDDVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRR 340


>gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 556

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 164/550 (29%), Positives = 283/550 (51%), Gaps = 31/550 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S  GY   + +Q   +   L   D++  AQTG+GKT AF L + S       +  PA 
Sbjct: 20  AISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILS-------KIDPAK 72

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P AL +APTRELA+QV    E  Y+K    V V    GG  +  + + ++ GA ++V 
Sbjct: 73  REPQALILAPTRELALQVATAFET-YSKQMPDVSVVAIYGGAPMGPQLKAIRQGAQVIVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+      +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ 
Sbjct: 132 TPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  +A+ + ++   + IA++ +  + I+   ++V    +  A++ +L        I F
Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDALIAF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAARG+D+
Sbjct: 252 VRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R  N  V   
Sbjct: 312 ARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQKVAEA 371

Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRA 426
             P+ + + +   +++     PL  D+ +    +++D L+A     P  +AA  LR    
Sbjct: 372 RLPNAQQVLDARIKKLTNSLAPLVADA-EATHGELLDKLVADIGCSPRALAAALLRKATN 430

Query: 427 G----LCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDN----FKGSSWFSLSVGSKQ 477
           G    L   E   P V   S R+R     R  + G   R       +G +     +G++ 
Sbjct: 431 GQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRARCRTPLGARD 490

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
              AR L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K  +      +G
Sbjct: 491 GIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKDTR------VG 544

Query: 538 GEKPDFRGYK 547
           G++   R Y+
Sbjct: 545 GKQLKLRRYR 554


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 193/339 (56%), Gaps = 1/339 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++++GYV  T VQ+  +   L  KDVL  AQTG+GKT +F L L   L   +D     
Sbjct: 14  KAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQRLAENHDPHQKP 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   ++   A         +GG S+  + R L+ G  IVV TP
Sbjct: 74  RRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQLRRGCDIVVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +N+S+++ +VLDEAD MLD+GF  DI+ ++   PKKR+ L+FSAT+  A
Sbjct: 134 GRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKKRQSLLFSATVPNA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA     + V V +A +N    ++  R   +    +   +  ++  +  K  +VF  
Sbjct: 194 IKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRELLSYLIGSNNWKQVLVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L E   +  AL G+ +Q  R+ AL+  + G+  V +ATD+AARG+D+ D
Sbjct: 254 TKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVLVATDIAARGLDIDD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           L  V++ ++   PE+ +HR GRTGRAG  G ++  V P+
Sbjct: 314 LPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPE 352


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score =  223 bits (568), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 192/340 (56%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL    Y+  + +Q AI+   L  +DVL  A+TG+GKT AFG+ +   L        P S
Sbjct: 18  ALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIERL-----EHGPNS 72

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELAVQV  E+  L     + V    GG  +  +   L+   HIVVGTP
Sbjct: 73  RNPQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKRAPHIVVGTP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +  + L +  L+ VVLDEAD MLD+GFR DIE IL   P++R+ L+ SAT+ P 
Sbjct: 133 GRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLSATVPPT 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y ++  +V+ +  N     I+ R   V  S + + +V +L+    + AIVFC 
Sbjct: 193 IEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQKAIVFCR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R T+ L++    V  + G++ Q  R+ AL   +  + RV +ATDV  RGID+ D
Sbjct: 253 TKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGRGIDISD 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  +I+ ++    ++ +HR GRTGR G++G++  FV P+ 
Sbjct: 313 VSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEE 352


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 206/362 (56%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL L   L  +  +F+  S 
Sbjct: 18  LNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQQL--DAGQFNTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  Y     V+ +C GGV    +R  L +  HI+V TP
Sbjct: 75  ---LVLCPTRELADQVANELRRLARYLPNIKVLTLC-GGVPFSIQRDSLIHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++   P +R+ L+FSAT   A
Sbjct: 131 GRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQTLLFSATWPDA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I + +   + I+ +   V+ S + + +  +L      + +VFC+
Sbjct: 191 IAAISHRIQRDPLTIAIDTVDELPA-IEQQFYEVSRSGKIDLLQKLLSREQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +    V+AL G++ Q++R   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L    N+ + W   
Sbjct: 310 LEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWHSL 369

Query: 373 PS 374
           P+
Sbjct: 370 PT 371


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K + + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
           L  +  R      P  L +APTRELA+QV  E++  Y++   G  V    GG ++ ++ R
Sbjct: 69  L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +
Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL
Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +
Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G + +FV P+ M
Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355


>gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424]
 gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 469

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/390 (35%), Positives = 217/390 (55%), Gaps = 11/390 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L  +D++  A+TGSGKT AFGLAL   L  +  RF     
Sbjct: 27  LAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHRL--DPRRFDVQ-- 82

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L +GAHIVVGTPG
Sbjct: 83  --AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLIHGAHIVVGTPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L+++ +  +VLDEAD MLD+GF DDI ++    P+ R+ L+FSAT  P I
Sbjct: 141 RILDHIDRGSLDLAAINTLVLDEADRMLDMGFFDDIAYVASRCPRDRQTLLFSATYPPGI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  + ++   + + + +  ++ I  R   V  S+R NA+  +L +    + + FC+T
Sbjct: 201 DKLSHRFLRNPQSLKLEATH-DNTTIRQRFYEVEESERLNAVGRLLDHFRPASTLAFCNT 259

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A      ++L    +Q +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 260 KARCRDLVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVATDVAARGLDIAQL 319

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ E++ +PE  +HR GRTGRA ++G +  ++  +   R   L +       W P  
Sbjct: 320 EAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLEQHHGGEFEWHP-- 377

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            +  +    ++R+L   + L  + G ++K+
Sbjct: 378 -LAELTPASSERLLAPMVTLQMLGGRKEKI 406


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
           L  +  R      P  L +APTRELA+QV  E++  Y++   G  V    GG ++ ++ R
Sbjct: 69  L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +
Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL
Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +
Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G + +FV P+ M
Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVIA-AVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K G+     VA+ IGGVS   + R L+ 
Sbjct: 70  R---ARMPRTLILEPTRELAAQV----EENFVKYGINHRLNVALLIGGVSFEEQERKLER 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 123 GADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  ++++ 
Sbjct: 183 FFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLRDLIQS 242

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+ R+ +
Sbjct: 243 EGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGKLRLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 303 ASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIV 351


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
 gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 463

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 139/377 (36%), Positives = 205/377 (54%), Gaps = 10/377 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q +   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 8   FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120
           L A   R+    A  A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   
Sbjct: 68  LDAR--RY----AVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L++  L  +VLDEAD MLD+GF DDI  +    PK+R
Sbjct: 122 LEHGAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ + ++   V +  E    S I  R   V   +R +A+  +L 
Sbjct: 182 QTLLFSATYPEGIAKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGQLLN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 241 HYRPVSTIAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   + 
Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360

Query: 361 REANVSVVWEPAPSVEA 377
                 V W P   + A
Sbjct: 361 EAQGRDVEWHPLAELNA 377


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score =  223 bits (567), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 205/369 (55%), Gaps = 7/369 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E+GY + + +Q+A     +  +D++  AQTG+GKT AF L L   L  E+ R +P 
Sbjct: 70  KTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL--ESGRKTPQ 127

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L +APTRELA+QV    + +      + V    GG     +   L+ G  +VVGT
Sbjct: 128 ----VLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGT 183

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L+ S L ++VLDEADEML +GF DD+E+IL+  PK+R++++FSAT+ P
Sbjct: 184 PGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPP 243

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y  D   V I ++++    I  RA+ V +S +  A+  +L   G +  I+F 
Sbjct: 244 EIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFA 303

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 304 RTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVE 363

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R     +    
Sbjct: 364 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQPIELME 423

Query: 372 APSVEAIRE 380
            P   AI +
Sbjct: 424 VPGNTAINQ 432


>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
 gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
          Length = 463

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 200/358 (55%), Gaps = 10/358 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA     +   T VQ A L    +++D++  A+TGSGKT AF + +   LL   
Sbjct: 31  VTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA Q+G + E L A  G+++AV +GGV    +   L    H
Sbjct: 91  QKL------FALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG N+  LK +V+DEAD +L++ F  ++E IL   PK+RR  ++
Sbjct: 145 VIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKERRTYLY 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +    D VR+ ++S+ +    +    + +    ++  +V IL     +
Sbjct: 205 SATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLVYILNEMAGQ 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFCST  S  R   +L +  F  V L G++SQ +R  +L   +   +   I TDVA+
Sbjct: 265 TAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLICTDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RG+D+P ++LV++ ++ +  ++ +HR GRT RAGR G++V  + Q    + +R ERL 
Sbjct: 325 RGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQRIERLI 382


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 195/339 (57%), Gaps = 10/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  GY N+T VQ   L P L+ +DV++ A+TGSGKT AF + L   L   N RF   
Sbjct: 17  DALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLLHHL---NPRFFGV 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            A   + + PTRELA QVG     L ++ + V V +  GG     +R  L +GAHIVVGT
Sbjct: 74  QA---VVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQRDSLHHGAHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH++   L +  +   VLDEAD MLD+GF D +  I    P  R+ L+ SAT   
Sbjct: 131 PGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPADRQTLLLSATFPD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKNAIV 249
            I  ++++ QK+ +++ + +E   H ++    V   V   +R+ A++ +  ++   NA+V
Sbjct: 191 DIKKISRSIQKNPIQITVDAEV-VHDEVVLEQVFFEVQKHERNVALLALFEHYRPANAMV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+   +   + L EH  +  A+ G+L Q+ER   L    +    V +A+DVAARG+D
Sbjct: 250 FCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPVLVASDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P LE+V++ EL  + +  +HR GRTGRAG  G +  ++
Sbjct: 310 IPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIV 348


>gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
 gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
          Length = 615

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 172/543 (31%), Positives = 275/543 (50%), Gaps = 50/543 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   + +Q   + P L  +DV+  AQTG+GKT AF L L S +   + RF    
Sbjct: 24  AVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLLSRV-DLSLRF---- 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  L +APTRELA+QV   ++  YAK   G  V    GG S+  + + LQ G  +VVGT
Sbjct: 79  -PQILVLAPTRELAIQVAEAMQS-YAKFLPGFHVLPIYGGQSMGLQLKQLQRGVQVVVGT 136

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R + L +  L+AVVLDEADEML +GF D +E IL  +P +R++ +FSAT+  
Sbjct: 137 PGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQVALFSATMPE 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  +A+ Y +D + + I S     + I  R  LV+ + + +A+  IL    +   I+F 
Sbjct: 197 AIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRILEVEDSNAWIIFV 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   ++ ++ G   + +ATDVAARG+D+ 
Sbjct: 257 RTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIVVATDVAARGLDVE 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++ ++ E  +HR GRTGRAGRKG ++ FV P+      ER   +A      +
Sbjct: 317 RITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPR------ERYLLKAIERATGQ 370

Query: 371 PA-----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA- 418
           P      PS+E + +R   +  +       ++ ++      L+A++        E+IAA 
Sbjct: 371 PIEPMHLPSLEDVADRRTSQFKEQ--LTTVLETEDLDRFASLVAEYQSEQEVSLERIAAA 428

Query: 419 -GFLRIHRAGLC--APEEITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGSSW 468
             FL      L   AP  +  +    G        +R     R     G +R +      
Sbjct: 429 LAFLAQRDRPLVPDAPPAVPSLDKAPGPRGARRLEERKERAPRERAAAGENRPDDTPMIL 488

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
           + L+VG    A+ + ++  +   SG+  + I  ++V  D + VE+ AD          LD
Sbjct: 489 YRLAVGESHGAQVKNIVGAIANESGLPSRLIRKVQVHDDYSTVELPAD----------LD 538

Query: 529 KGI 531
           +GI
Sbjct: 539 RGI 541


>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 590

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 204/369 (55%), Gaps = 7/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E G+   + +Q   +   L+  DV+  AQTG+GKT AFG+ +   +       +
Sbjct: 18  ILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLERI------DT 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            ++A  AL + PTRELAVQV  EL  L     GV +    GG S+ R+ R L+ G HIVV
Sbjct: 72  SSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQIRSLKKGVHIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+  + L    ++ +VLDEADEMLD+GFR+DIE IL   P+ R+ ++FSAT+
Sbjct: 132 GTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDRQTILFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I ++ K +  D   + +      + +I+     V    +   +  ++  H  K+ +V
Sbjct: 192 SKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLIDMHHIKSLLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V    + L    +    + G+L QQ+RSN +   + G   + +ATDVAARGID
Sbjct: 252 FCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L+ VI+ ++  + E  +HR GRTGRAG  G +  ++ ++ + R + +     V +  
Sbjct: 312 VSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLKSIESYTKVKIEK 371

Query: 370 EPAPSVEAI 378
              PS E I
Sbjct: 372 GVIPSFEDI 380


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 140/391 (35%), Positives = 211/391 (53%), Gaps = 12/391 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L I PTRELA QV +E+  L  A+  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 78  ---LVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  +VLDEAD MLD+GF D IE I++ +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  + +D   V  A      + I+ R   ++  +R +A+  +L +    + + FC T
Sbjct: 195 KQLASKFMRDPQTVK-AEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 254 KQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +   RA+ + +     + W+   
Sbjct: 314 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKAPLNWD--- 370

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            V+ ++ +     LQ P+    I G  K  V
Sbjct: 371 QVDNLKSQGGAP-LQPPMSTLCIAGGRKDKV 400


>gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
          Length = 460

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 209/367 (56%), Gaps = 11/367 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL +   L  +  R      
Sbjct: 19  LDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             +L + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAHI+VGTPG
Sbjct: 75  --SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    +++S L  +VLDEAD ML++GF++ ++ I+  +PK+R+ L+FSAT   AI
Sbjct: 133 RILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLLFSATYPEAI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A++  +DA+ + +AS +   S       +     RD A+  +L  H  ++A+VFC+T
Sbjct: 193 QEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQPESAVVFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L    F V+ L G++ Q+ER  AL    +    V +ATDVAARG+D+ +L
Sbjct: 253 KREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
           + V + ELS +PE  +HR GRTGRAG +G+++ F   + M R A+    E  + +V  PA
Sbjct: 313 DAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQ---IEEYMDIVISPA 369

Query: 373 PSVEAIR 379
              E ++
Sbjct: 370 ELPEPVK 376


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +N+   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437


>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
 gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Ralstonia eutropha JMP134]
          Length = 474

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 212/390 (54%), Gaps = 11/390 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL   L A   RF     
Sbjct: 32  LAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLHRLDAR--RFDVQ-- 87

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L +GAH+VVGTPG
Sbjct: 88  --AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDSLVHGAHVVVGTPG 145

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L +S +  +VLDEAD MLD+GF DDI ++    P++R+ ++FSAT    I
Sbjct: 146 RILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRERQTMLFSATYPAGI 205

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +    V +A E    S I      V  S+R +A+  +L +    + + FC+T
Sbjct: 206 DKLSQKFLRKPQEVKLA-EKHDSSSIRQYFYEVDESERLSAVGRLLDHFRPASTLAFCNT 264

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A       +L    FQ +AL G+L Q++R   L    +G   V +ATDVAARG+D+  L
Sbjct: 265 KARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLVATDVAARGLDIAQL 324

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ E++ +PE  +HR GRTGRAG +G +  ++  +   R   L +       W P  
Sbjct: 325 EAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNLEQHHGGEFEWHP-- 382

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            +  +R    +R+L   + L  + G ++K+
Sbjct: 383 -LAELRAASTERLLPPMVTLQMLGGRKEKI 411


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 208/382 (54%), Gaps = 20/382 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY + T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E ++  
Sbjct: 14  IKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEENK-- 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTREL VQV  E   +     +  A   G     +++ +L    HIVVG
Sbjct: 72  ----PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FSAT+ 
Sbjct: 128 TPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D V + +A+E  + + I +  + +   +++  + ++L      +AI+F
Sbjct: 188 EEMHDLIKRYQNDPVVIEMAAE--KTNPITH--IEMQTENKEKTLQDVLITENPDSAIIF 243

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   + +L         + G L Q+ER  A+   + G++R  IATDVA RGID+
Sbjct: 244 CNTKNQVDELSDLLQ---VNAAKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGRGIDV 300

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N+++  +
Sbjct: 301 ENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEAMLNITIQKK 360

Query: 371 PAPSV-------EAIRERDAQR 385
             P++       EA R++  +R
Sbjct: 361 RKPTIIEVKASEEAFRKKQQKR 382


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
 gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 653

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 177/566 (31%), Positives = 272/566 (48%), Gaps = 50/566 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L A         
Sbjct: 21  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K+   V I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371
           + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++    
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-------EKIAAGFLRI- 423
            P+VE + ER   +          ++  +  M   LLAK  P       E +AA  L++ 
Sbjct: 374 LPNVELLGERRLAKFAAK--VQQQLESSDLDMYRGLLAKLQPGEEELEMETLAAALLKMA 431

Query: 424 --HRAGLCAPEEITPVSLVSGRDRFR--------------DDSRAFKVGGGSRD-----N 462
              R  +  P+   PV     R  F                DSR    GG  R      +
Sbjct: 432 QGERPLILPPD---PVFKPRQRREFNDRDDRGSDRRRDARPDSRD---GGAERPRRERRD 485

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGV 518
                 + + VG     E R ++  +     I+ + IG I++    + +E+      + +
Sbjct: 486 VGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPKGMPGEIL 545

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFR 544
               RT  L+K + ++ LG  +P  R
Sbjct: 546 SHFTRTRILNKPMNMQLLGDAQPHER 571


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 204/354 (57%), Gaps = 12/354 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
           L  +  R      P  L +APTRELA+QV  E++  Y++   G  V    GG ++ ++ R
Sbjct: 69  L--DTSR----KYPQLLVLAPTRELALQVADEIQA-YSRHLPGFQVLPLYGGQNMAQQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +
Sbjct: 122 ALQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL
Sbjct: 182 RQVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +
Sbjct: 242 EAEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G + +FV P+ M
Sbjct: 302 ATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREM 355


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 204/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+ ++  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 196/346 (56%), Gaps = 11/346 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  GY ++T VQ   +   L+ KDV+  A+TGSGKT AFG+ L  T+   N RF   
Sbjct: 17  EALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQTI---NPRFFGV 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVG 130
            A   L + PTRELA QV  EL  L ++   +  V +C GG     +   L++GAHIVVG
Sbjct: 74  QA---LVLCPTRELAEQVSGELRRLASRMANIKLVTLC-GGKPFGPQVGSLEHGAHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L +  LK +VLDEAD MLD+GF D +E I+  +P+ R+ L+FSAT  
Sbjct: 130 TPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQTLLFSATYP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  ++ + Q+    V +  E     + I+     V   +R   ++ +  ++   NA+V
Sbjct: 190 ENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEHYTPANAVV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+        VL ++  +  A+ G+L Q+ER   L    +    V +ATDVAARG+D
Sbjct: 250 FCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCPVLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           +  L +VI+ EL  +PE  +HR GRTGRAG  G+++  VIP    R
Sbjct: 310 IKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHR 355


>gi|325103790|ref|YP_004273444.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972638|gb|ADY51622.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 372

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 202/359 (56%), Gaps = 13/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL E   +  T +Q+  +   L+E KD +  AQTG+GKT AFGL +   + A       
Sbjct: 16  QALEENNIIKPTEIQKLAIPYLLKEGKDFIGQAQTGTGKTAAFGLPVLEQIDAN------ 69

Query: 72  ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +     L + PTREL  Q+ ++L     Y+   +      GG  +  +   L+   HIVV
Sbjct: 70  SKVIQVLILCPTRELGQQIAKQLFKFTKYSDKKIFTEAVYGGEKIDIQIGRLKRPTHIVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  K +N+ H+K ++LDEADEML +GF+ DI+ IL+ +  +R   +FSATI
Sbjct: 130 ATPGRLIDLLERKAINLDHVKTIILDEADEMLSMGFKKDIDKILEYTNGQRYTWLFSATI 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             A+  + K+Y  +  +V I  E   + +ID++ ++V L D+ + +   L+ +     IV
Sbjct: 190 PAALDDIIKSYMDEPFKVEIRKEQLVNENIDHKYMVVDLKDKLDLLSRFLKENSKARGIV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+ +    +K L    F+V A+ G++ Q++R   ++  +  R  + IATD++ARGID
Sbjct: 250 FCRTKKNAELLSKQLYARNFKVEAIHGDMGQRDREKVMRAFKSERLPILIATDISARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSV 367
           + +L  VIH +L    E   HRSGRT R GRKG+S +F+ P ++ +  +    EAN+++
Sbjct: 310 VQNLNYVIHYDLPDQMEYYTHRSGRTARGGRKGLSLIFIAPNDIDKVKD---LEANLNI 365


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 13/366 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  G+   T +QE  +   L  KDV+  AQTG+GKT AFG+ +   + A +      
Sbjct: 15  KALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPMIENIDAGSGDIQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + I PTRELAVQV  EL  +    G+      GG  + R+   L+    I+VGTP
Sbjct: 73  ----GIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQINGLKRRPQIIVGTP 128

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ R K +++ +++ VVLDEADEMLD+GF +DIE IL  +P+ R+ L+FSATI  
Sbjct: 129 GRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTPEGRQTLLFSATIPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ + KD   + I S++   S  +     V    +   +  +L       AIVF 
Sbjct: 189 PIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCRLLDVQLPALAIVFV 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   TK L E  +    + G+L+Q +R + ++  ++G   V +ATDVAARG+D+ 
Sbjct: 249 RTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEVLVATDVAARGLDIS 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368
            +  V + ++  +P++ +HR GRTGRAG+KG ++ FV P+ M   R  E++ R    S+ 
Sbjct: 309 GVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLRFIEKITRH---SIE 365

Query: 369 WEPAPS 374
             P PS
Sbjct: 366 RRPIPS 371


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 196/343 (57%), Gaps = 9/343 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL + G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + + L +++     
Sbjct: 20  ALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHI+VGT
Sbjct: 75  --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P   + ++FSAT+ P
Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + T+   Y +D  RV++A  N     ++    +V   ++D A+  +L       +IVF 
Sbjct: 193 MVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+   F+  AL G++ Q +R   +  +++G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMR 355


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 205/353 (58%), Gaps = 11/353 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  +  
Sbjct: 13  PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+  + +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+FS
Sbjct: 126 ILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT    I ++A     +   V + S    HS I      V  ++ RD+A+  +L +H  +
Sbjct: 186 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++ F   + M R A+
Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 357


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 203/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENIIQ------ALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
 gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 160/532 (30%), Positives = 265/532 (49%), Gaps = 33/532 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+ + GY   T +Q+  + P L E  +D++  AQTG+GKT A+GL L   +     R  
Sbjct: 14  KAVQDLGYKEPTPIQKKAI-PALLENRQDLVGLAQTGTGKTAAYGLPLLQLIDFSTSRVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                  L + PTREL  Q+ ++L     Y +   +VAV  GG  +  + R ++ GA I+
Sbjct: 73  ------GLILCPTRELCFQISKDLARYSRYVEHAKIVAV-YGGAGMEPQIRQIKKGAQII 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
             TPGRL D I+   +N+  +  VVLDEADEML +GF++D++ IL  +P ++R  +FSAT
Sbjct: 126 TATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPEKRSWLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  +++NY KD + + +  +N   S+I +   +V   +R  A+  I+ YH    ++
Sbjct: 186 MTAPVARISQNYLKDPLEITVGRKNSGASNISHFKYVVLEKNRYPALKRIIDYHPDIFSL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC TR       + L    +   +L G+LSQ +R   +   R+   ++ +ATDVAARG+
Sbjct: 246 VFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQILVATDVAARGL 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+  VIH  L   P    HRSGRT RAG+ G S+ ++     R+   + +   V   
Sbjct: 306 DVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLAHVEQVTGVRFR 365

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-------LAKHDPEKIAAGFL 421
            E  PS  A+ E+   R+++  + +D +  +E   +D         LA    E++   F+
Sbjct: 366 HEKVPSGRAVCEKQLYRMVEKLVDVD-VNHEE---IDAFLPPVYETLAGLTKEQLIQHFV 421

Query: 422 RIHRAGLC----APEEI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            I            E+I   TP    S   R   + R  K     ++  +    F L++G
Sbjct: 422 SIEFNRFLDYYKGSEDINARTPQKRGSTEKRTPAEKRTSKY--SPKEPTETQKLF-LNMG 478

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                +   +  ++C  SGI    IG I V  + +F+EV     D + +++K
Sbjct: 479 RLDNIQKGAITRLVCDKSGIRSNQIGKIEVMREFSFLEVDTAWTDHVMKSMK 530


>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
 gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
          Length = 642

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 277/587 (47%), Gaps = 39/587 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L A         
Sbjct: 21  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDAS------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K+   V I S      DI           ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI--- 423
           P+ E + +R   +          ++  +  M   LLAK  PE+      +AA  L++   
Sbjct: 375 PNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLAKLQPEEELDIETLAAALLKMAQG 432

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------SRDNFKGSSWFSL 471
            R  +  P+   PV     R  F D                       R +      + +
Sbjct: 433 ERPLILPPD---PVFKPRQRREFNDRDDRGGDRRRDSRDGGERPQRRERRDVGEMQLYRI 489

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527
            VG     E R ++  +     I+ + IG I++    + +E+      + ++   RT  L
Sbjct: 490 EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEILNHFTRTRIL 549

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF--KRFKGASK 572
           +K + ++ LG  +P  R  +  G  +   + G  + F  +R +GA +
Sbjct: 550 NKPMNMQLLGDAQPHERRERREGGNAGGERRGNGRPFNGERREGAPR 596


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 205/377 (54%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I E L   G V  T +Q   +   L+ KD++  AQTG+GKT AF L +   +    
Sbjct: 10  IIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQKINKNQ 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA+Q+  E + +     V V    GG  V ++   L+ G H
Sbjct: 70  KDVQ------ALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGGMH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DH+R   +++  +  +VLDEAD+ML +GF +++E+I+  +P+ R+++++S
Sbjct: 124 VVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLMLYS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  L   Y K+ V + I S      +I    V      +  A++++++      
Sbjct: 184 ATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRHKQEALMHMIKQENPFL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC T+  V   +  L E  F    L G+++Q +R   ++  R+ + ++ +ATDVAAR
Sbjct: 244 AIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREA 363
           GID+  +  V + ++  + E  +HR GRTGRAG KGM++ F  P++    A  ER   + 
Sbjct: 304 GIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIERGINQK 363

Query: 364 NVSVVWEPAPSVEAIRE 380
            V + ++P   VE+I E
Sbjct: 364 IVKITFKPEGRVESIEE 380


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 211/391 (53%), Gaps = 12/391 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 38  LDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 94

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L I PTRELA QV +E+  L  A+  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 95  ---LVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 151

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D IE I++ +P +R+ L+FSAT    I
Sbjct: 152 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARRQTLLFSATYPVGI 211

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  + +D   V  A      + I+ R   ++  +R +A+  +L +    + + FC T
Sbjct: 212 KQLASKFMRDPQTVK-AEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPASTVAFCFT 270

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 271 KQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 330

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +   RA+ + +     + W+   
Sbjct: 331 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIEQLQKTPLNWD--- 387

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
            V+ ++ +     LQ P+    I G  K  V
Sbjct: 388 QVDNLKSQGGAP-LQPPMSTLCIAGGRKDKV 417


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 266/521 (51%), Gaps = 41/521 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L  +  +     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAH+VVGTP
Sbjct: 75  -PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++ V V++A +N     +  +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV-- 367
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373

Query: 368 ----------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                     + + A  +EA +E  +         LD      +K+   L  + DP  +A
Sbjct: 374 PLRDQVAEARLSKLAAELEAEKEHKS---------LDKFAELVEKLQTSL--EIDPAMLA 422

Query: 418 AGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLS 472
           A  L+     R      E+  P+     RD+ +      + G     +F    W  + L 
Sbjct: 423 AMLLKRQQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGREGGRSFNTQDWDTYQLQ 479

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG +Q  + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 480 VGREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/539 (30%), Positives = 264/539 (48%), Gaps = 39/539 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I  A+ + G+   + +Q+  +      +D+   AQTG+GKT AFG+ L +++   
Sbjct: 55  NLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLLASIDTS 114

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +        AL +APTRELA+QV   +E +     G+      GG     + R L+ G
Sbjct: 115 VRQVQ------ALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRALKTG 168

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DHI    L++S ++ +VLDEADEML +GF DD+E +   +P  R++ +
Sbjct: 169 VHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQVAL 228

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  + V + +A ++   + ID    +V    +  ++  +L     
Sbjct: 229 FSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVVPFRHKTGSLYRVLATSDV 288

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVFC TR +       L E       +SG++ Q++R   ++ +R+G+  V +ATDVA
Sbjct: 289 EAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVLVATDVA 348

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361
           ARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++ F+ P  +   R  ER  R
Sbjct: 349 ARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRSIERTIR 408

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEK---I 416
                +   P PS   + E   + +L +      I+     M + L+  +  D E     
Sbjct: 409 TELKEI---PIPSPADVSEHKMRTMLTN--LSTRIEAGRLSMYEQLIDSYLADSEHSATT 463

Query: 417 AAGFLRIHRAGLCAP------EEI------------TPVSLVSGRDRFRDDSRAFKVGG- 457
            A  L     G   P      EE                S   G DR R D  A +  G 
Sbjct: 464 VAAALAALAVGDSGPRARADQEEYERQVADEASSRRQASSRTRGDDRGRSDRPARERSGR 523

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +R      + + ++VG    A+ R ++  L    G+    +G I +    + V++SAD
Sbjct: 524 PARSRDGEGTTYRIAVGYNDGAQPRGIVGALTNEGGLRGSDVGRINMFATFSLVDISAD 582


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 210/366 (57%), Gaps = 17/366 (4%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + FE+    P+++  AL+E+GY   T +Q   +   L  KDV+ +AQTG+GKT  F L +
Sbjct: 73  QTFESFGLDPRIL-RALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 131

Query: 59  ASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LL   N   SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ 
Sbjct: 132 IQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNP 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  
Sbjct: 192 QTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 251

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNA 234
           P +R+ L+FSAT SP I  LA +Y K  V + +A  N  + ++  R V+  + D  +  A
Sbjct: 252 PAQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENV--RQVVYQVQDGHKQAA 309

Query: 235 IVNILRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V++L+       ++  IVF +++   SR  + L        A+ G+ +Q ER   L   
Sbjct: 310 VVHLLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGF 369

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVI 348
           ++G     +ATDVAARG+D+P +  VI+ +L  + E+ +HR GRTGRAG  G  +S+FV 
Sbjct: 370 KNGTIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFV- 428

Query: 349 PQNMQR 354
           P N  R
Sbjct: 429 PGNDDR 434


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 217/375 (57%), Gaps = 7/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I +A+++ G+   + +Q   +   ++  DV+  AQTG+GKT AF L + S +  + 
Sbjct: 74  LPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSRIDVKK 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 134 ------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSGLRRGA 187

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 188 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 247

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+++Y KD   + + S+ R +++I  R + VA  ++ +A+  IL     +
Sbjct: 248 SATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRILEVTEFE 307

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 308 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 367

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 368 RGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERATNA 427

Query: 366 SVVWEPAPSVEAIRE 380
            ++    P+V+ + E
Sbjct: 428 KLIEMDLPTVDEVNE 442


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/356 (39%), Positives = 201/356 (56%), Gaps = 11/356 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL + G+   T VQ A +   L   DVL  AQTG+GKT AFGL L  ++     R
Sbjct: 14  ESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDSIDPAQRR 73

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHI 127
                   AL +APTRELA QV   LE   A   G+ +    GG  +  + R L++GA +
Sbjct: 74  VQ------ALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGAQV 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHI+   L +  L+ VVLDEADEML +GF ++IE+IL+ +P +R+  +FSA
Sbjct: 128 VVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKN 246
           T+   I  +A  + ++   + I + N   +DID    LV    +  A+  ++    G   
Sbjct: 188 TMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGLDA 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+A+ +   + L     Q   L+G++ Q ER   +  +RDGR  V +ATDVAAR
Sbjct: 248 AIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359
           GID+P +  V + +   + E  +HR GRTGRAGRKG ++ F+ P+   M R  ERL
Sbjct: 308 GIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERL 363


>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 460

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 13/349 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G+  +T +Q   L   L  KDV+  A+TGSGKT  FGL +   L  +N  FS  S 
Sbjct: 19  LADLGFERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVFGLGILEKLDPKN--FSVQS- 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              + + PTRELA QV  E+  L      V +    GG  +  +   L++GAHIVVGTPG
Sbjct: 76  ---MVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKHGAHIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+  + L++  +  +VLDEAD MLD+GF D ++ I++  P++R+ L+FSAT  P I
Sbjct: 133 RIVDHLEKQTLDLDAISTLVLDEADRMLDMGFEDSMDAIVNELPRQRQTLLFSATYPPQI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+      V V  A E    S I    YR  +    +RD A+  +L  +   + ++F
Sbjct: 193 QAIAERVMVKPVLVQ-ALEKHDSSSIKQDFYR--ISDEGERDVAVRLLLLKYRPDSTVIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T+ L  H F V+AL G+L Q+ER  AL    +    + +ATDVAARG+D+
Sbjct: 250 CNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVATDVAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
             L+LVI+  ++S+PE  +HR GRTGRAG KG +  ++    + +  RL
Sbjct: 310 DSLDLVINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKEKHKVARL 358


>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 468

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 202/361 (55%), Gaps = 25/361 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALASTLLAEN 66
           +AL+E GY+  TSVQE  +   +  +D+LVS+QTGSGKT AF L      A A+ L   +
Sbjct: 14  KALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPALHKFATAAELQLAD 73

Query: 67  DRFSP-----------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
              +P                 A+ P  L + PTRELA+QV    +   ++   + AV I
Sbjct: 74  SSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDKYGSQMRRIKAVSI 133

Query: 110 -GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+GF DD
Sbjct: 134 LGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLDEADRMLDMGFIDD 193

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227
           IE I+ ++P+ R+ ++FSAT+   +  +AK   K+ + + IA    +H +I  R   V  
Sbjct: 194 IEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATKHENISQRVHFVDD 253

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           LS ++  + ++LR      A+VF +T+         L    F   AL G++ Q  R+  L
Sbjct: 254 LSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTL 313

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             MR G+ RV +ATDVAARGID+P +  V + +L   PE+ +HR GRTGRAGR G++V +
Sbjct: 314 DGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGIAVSL 373

Query: 348 I 348
           +
Sbjct: 374 V 374


>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 528

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/438 (33%), Positives = 233/438 (53%), Gaps = 19/438 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F
Sbjct: 19  ILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENF 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             +    A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VV
Sbjct: 72  EHSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  +   +RML FSAT+
Sbjct: 132 GTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTNDDKRMLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNA 247
            P I  +AK + K+   + + S  R+ +      +   +++RD   A+  I+        
Sbjct: 192 PPEIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYG 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARG
Sbjct: 250 IIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           ID+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     
Sbjct: 310 IDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKE 368

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +  E  P V+ + +    RI+ D   + +D+     KK+   LL   + E I A  L++ 
Sbjct: 369 IRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLT 428

Query: 425 RAGLCAP---EEITPVSL 439
            + +       EI+PV +
Sbjct: 429 YSDVLDESNYNEISPVKM 446


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 198/356 (55%), Gaps = 10/356 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I  A    G+  +T +QE  +   +   D++  A TG+GKTVAFG+ + S       
Sbjct: 11  PEII-RATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPILS------- 62

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           +  PAS  P A+ ++PTRELA Q+ ++L+ L      +  VC+ GG  + +++R L+ G 
Sbjct: 63  KVDPASLKPQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQQRQLKAGC 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH R   +++S ++ VVLDEADEML++GF  D+  I+D    ++ + MF
Sbjct: 123 QIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMKHRKSLSMF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATIS  +  +   YQ +A  V++         I    +L    D+      I+   G K
Sbjct: 183 SATISREVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGRDKLADAAQIIISEGYK 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC+T+ +       LA   F V  L G+LSQ ER+  +   + G   V +ATDVAA
Sbjct: 243 RVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RGID+ D++ VI+ ++    E+  HR GRTGRA ++G S     +  Q+R ++L R
Sbjct: 303 RGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVDQLLR 358


>gi|317485296|ref|ZP_07944176.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923422|gb|EFV44628.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 550

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 209/375 (55%), Gaps = 9/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ++  A ++ G+ +L  VQ   L   L  +D++V ++TGSGKT  + L L +     
Sbjct: 50  DLPQLLQTACAKAGWNSLMPVQSRALPYLLEGRDLMVQSRTGSGKTGTYLLPLMA----- 104

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R +PA  A  AL + PTRELAVQV +E + L+  +G  VA   GGV   ++   L+ G
Sbjct: 105 --RLNPAMPAVQALILVPTRELAVQVEQEAKTLFKGSGFTVAAVYGGVGYGKQMDALRQG 162

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RML 183
             +VVGTPGR+ DH+  + LN+ H+ A++ DEAD ML +GF  D++ I    P+     +
Sbjct: 163 VSVVVGTPGRVLDHLLRRTLNLDHISALIFDEADRMLSIGFYPDMKEIQRYLPETSIHAM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT  P +  LA  +  D   +++++     +++ +        ++D  ++ IL    
Sbjct: 223 LFSATYPPHVLKLAGEFLTDPQMLSLSTTQIHVAEVQHLYCECKSMEKDRTLIKILEVEN 282

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AI+FC+T+A+V   T VL    F    LS +LSQ  R + L  +R G  R  +ATDV
Sbjct: 283 PASAIIFCNTKATVHFVTAVLQGFGFNADELSADLSQSRREDVLSRLRKGTIRFLVATDV 342

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P+L  V   E   + E+ +HR+GRTGRAG  G+ + ++    +   +R+ +  
Sbjct: 343 AARGIDIPELSHVFLYEPPDDRESYIHRAGRTGRAGAAGVVISLVDIMEKMELQRIAKYF 402

Query: 364 NVSVVWEPAPSVEAI 378
            V +    AP+ E +
Sbjct: 403 KVPLTQHMAPTDEEV 417


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 206/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + EAL++ GY   + +Q A +   +  +D+L  AQTG+GKT AF L L + +  E 
Sbjct: 22  LPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLARINLE- 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A  P  L +APTRELA+QV    + +     G+ V    GG     +   L+ G 
Sbjct: 81  -----ARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+R   LN+S L+ +VLDEADEML +GF DD++++L+  P +R++++F
Sbjct: 136 HVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +++ + ++   V I ++    S I  R +L+    + +A++ +L  HG  
Sbjct: 196 SATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPG 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L         L+G++ Q  R   ++ ++ GR  V +ATDVAA
Sbjct: 256 GVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ +   + E  +HR GRTGRAGR+G ++  +    +R    L R    
Sbjct: 316 RGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLERAVGS 375

Query: 366 SVVWEPAPS 374
           S+     PS
Sbjct: 376 SIDAMDVPS 384


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 212/380 (55%), Gaps = 9/380 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + I  A +ERGY + T +QE  +   +   D+L  AQTG+GKT AF + +
Sbjct: 1   MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI 60

Query: 59  ASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L       S A + + AL + PTRELA QV   ++       +   V IGGV ++ +
Sbjct: 61  LHKLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+    I+V TPGRL DHI+ + +++SH++ +VLDEAD MLD+GF  DI  IL   P
Sbjct: 121 MQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ L+FSAT SP I  LA     +   V +A+ N    ++  R   V    +   + +
Sbjct: 181 KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  H     +VF  T+    R  + L++   Q +A+ G+ SQ  R+ AL   ++G+ +V
Sbjct: 241 LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-- 355
            +ATD+AARGID+ +L  V++ EL   PE+ +HR GRTGRAG  G +V ++    +++  
Sbjct: 301 LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ 360

Query: 356 -AERLFREA---NVSVVWEP 371
             E+L R +    + + +EP
Sbjct: 361 DVEKLLRRSFDREIVIGFEP 380


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 261/518 (50%), Gaps = 35/518 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +     +     
Sbjct: 20  ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHIVVGTP
Sbjct: 75  -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRALSRGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + T+   Y ++  +V++A  N     +     +V   ++D A+  +L       +IVF  
Sbjct: 194 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ +     +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSTMEEIQL 373

Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                V A R          E++++ +      + ++Q    + +DV     D   +AA 
Sbjct: 374 PLRDQVAAARVAKLGAELETEKESKALENFAGLITTLQ----ESLDV-----DAATLAAM 424

Query: 420 FLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGS 475
            L+    ++ L    E  P+     RD+ R   R      G RD F    W  + L VG 
Sbjct: 425 LLKRQQGKSPLFYIGE-DPMIAAIERDKNRRKERRENRDNGGRD-FNTQDWDTYQLQVGR 482

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +Q  + + ++  L    G+ + SIGAI++    T+V++
Sbjct: 483 EQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 520


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 200/344 (58%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++   G+   T +Q   +   L  KDV+  AQTG+GKT+AFGL L   +   N+   
Sbjct: 13  IMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPLLENVDVTNESIQ 72

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  + IAPTRELA+QV  E+ +  Y K   V++V  GG  + R+ R L+   HIVV
Sbjct: 73  ------GIVIAPTRELAIQVAEEIYKASYHKRARVLSV-FGGQDISRQIRSLKKNPHIVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DHI  K L + ++  VVLDEADEML++GF +DIE IL  +P+K++ L+FSAT+
Sbjct: 126 GTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPEKKQTLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A+ +  + V V + ++    S+I    V V    + + +  +L     + AI+
Sbjct: 186 PAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRLLDIQSPELAII 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   +  L    +    + G+LSQ +R + L+  ++G   V +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P+ +
Sbjct: 306 ISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREV 349


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 234/442 (52%), Gaps = 21/442 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E++ + G+   T +Q   +   L  KDV+  AQTG+GKT +FGL +   +   N +    
Sbjct: 14  ESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPMLQKINLRNRKVQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTP
Sbjct: 72  ----GLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIRQLKDQPHIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI  K L + +++ +VLDEADEML++GF +DIE I+   P+ R+ L+FSAT+   
Sbjct: 128 GRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPENRQTLLFSATMPDD 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   + K+   V I S     + ID   V     ++ + +  +L     +  IVF  
Sbjct: 188 IKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLLDVQTPELTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    F+   + G+LSQQ+R + L+  ++    + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++  +PE+ +HR GRTGRAG++GMSV FV P  M   R  E L R+   ++  
Sbjct: 308 VTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVIEDLTRKRMTAL-- 365

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
            P   +EAI  +    I Q    + S+     K+ +  LL +++ +++AA  +    +G+
Sbjct: 366 RPPTQMEAIEGQMKSAIEQIDEKMKSVDTRRFKEAISYLLDEYEADELAALLV----SGM 421

Query: 429 CA-----PEEITPVSLVSGRDR 445
                  P +ITP   +  R R
Sbjct: 422 IKDPTEIPVKITPERPLPSRKR 443


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/350 (38%), Positives = 197/350 (56%), Gaps = 19/350 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+   Y ++T +Q   L   L  KDV+  A+TGSGKT AF L L   L     R    
Sbjct: 17  ENLTSLEYTSMTPIQAQSLPHILSGKDVIAQAKTGSGKTAAFALGLLENLDVRKYRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQNGAHIV 128
               AL + PTRELA QV +E+  L    G+    V+A+C GGV +  +   L++GAHI+
Sbjct: 75  ----ALVLCPTRELADQVAQEIRKL--ARGIPNVKVLALC-GGVPMGPQIGSLEHGAHII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+  + L++SH+  +VLDEAD MLD+GF   ++ I+D +P+ R+ L FSAT
Sbjct: 128 VGTPGRIEDHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTLFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAK 245
               I  +A    +D V+V + S    H++++ R     +     R  A+  +L  H   
Sbjct: 188 FPEKIQQIASRTMRDPVKVEVESS---HNNVNIRQYFYKVEQNKQRTTALRLLLLKHEPN 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+TR         LA   F V+AL GEL Q+ER   L    +    + +ATDVAA
Sbjct: 245 SCVVFCNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RG+D+ +L++VI+  ++ +PE  +HR GRTGRAG KG +  +   N   R
Sbjct: 305 RGLDINELDMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNESYR 354


>gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
          Length = 484

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 198/348 (56%), Gaps = 2/348 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67
           Q I  ALSE+GY   T +Q A +   L   D+L +AQTG+GKT AF L +L       N 
Sbjct: 39  QEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYANA 98

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SPA  P+  L + PTRELA Q+ +  +       +   V  GGVS+ ++  DL+ G  
Sbjct: 99  STSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDKQTADLRAGCE 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF D+I  I+   PK R+ L+FS
Sbjct: 159 IVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLLPKSRQTLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +P I  LA+++      + +A++N  +++++   + V    +   +  ++       
Sbjct: 219 ATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKELLERLIVDLNMPQ 278

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+ S  +  + L        A+ G+ SQQ R   L   + G  RV +ATDVAAR
Sbjct: 279 VIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELRVLVATDVAAR 338

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           G+D+ +L  VI+ EL    E+ +HR GRTGRAG +G+++ ++ +  Q+
Sbjct: 339 GLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQK 386


>gi|315125225|ref|YP_004067228.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
 gi|315013738|gb|ADT67076.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
          Length = 466

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY  +T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 15  LPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 75  FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P  R+ L+F
Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPTNRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +AK    +   + +  +  + +   Y   +     R   +  +L     +
Sbjct: 189 SATFPKSIEAIAKRVLSNPEMIKVEEQQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ +P+  +HR GRTGRAG+KG++  +     Q +  ++      
Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368

Query: 366 SVVWEPAPS 374
               EP PS
Sbjct: 369 DFTPEPMPS 377


>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 538

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 207/376 (55%), Gaps = 7/376 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +   + +QE ++   L  +DV+  AQTG+GKT AFGL          +R   A
Sbjct: 62  KAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLPSL-------NRLDKA 114

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L I PTRELAVQV  EL  L    G+      GG S+ R+   ++ GA +VV TP
Sbjct: 115 AGVGLLVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERGAQVVVATP 174

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ + L+      VVLDEADEML++GF +DI+ I    PK+R+ L+FSAT+   
Sbjct: 175 GRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLLFSATMPLP 234

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK + ++   + I  +     +I     ++  S+RD+A+V +L       +I+FC 
Sbjct: 235 IQKLAKTFLREPEFIKITKKETASQNIQQICYVIHESERDDALVRLLDAQEEAKSIIFCR 294

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V R +  L    +    L G++ Q +R   +   R    ++  ATDVAARG+++ D
Sbjct: 295 TKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAATDVAARGLNVLD 354

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L    E+ +HR GRTGRAG KG+++ ++        + +FRE   ++ ++  
Sbjct: 355 VTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHIFREHGGNIEYQSI 414

Query: 373 PSVEAIRERDAQRILQ 388
           P+++ ++ + A++ L+
Sbjct: 415 PTLQDVKRKFAEKFLK 430


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 211/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   +++ L Y+   + +VFC
Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISALSYYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYMQMKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398


>gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b]
 gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 571

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 240/454 (52%), Gaps = 15/454 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ALS++G+   + +Q+ ++   L+E+  L+  AQTG+GKT AFG+ +  T+ A+       
Sbjct: 16  ALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILETIDAD------- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA QV  E+  L  +  + V    GG S+  + + L+ G  IVVGTP
Sbjct: 69  KTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQIKRLKAGVDIVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K L ++ L   VLDEADEML++GF +DIE IL+ +  +++ML FSATI  A
Sbjct: 129 GRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTNDEKKMLFFSATIPKA 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK +  +   + +  +    +  +     V   D+  A+  +L Y      IVFC 
Sbjct: 189 ILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQNFYGIVFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T++ V   T  L    +    + G+++Q  R  AL + +     + +ATDVAARGID+ +
Sbjct: 249 TKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTILVATDVAARGIDVSN 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           L  VI+  +    E+ +HR GRTGRAG KG+++ FV P+   + A+ + R     +  E 
Sbjct: 309 LTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLAQ-IKRVTKTDIKRED 367

Query: 372 APSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            P+VE I E  ++A     D +  +S     +++   L+   D  ++ A  LR       
Sbjct: 368 IPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQVLASVLRHVYEDEF 427

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            P+    ++ V  + +  D +R F +  GS+D +
Sbjct: 428 LPDNYNEIADV--KVKINDKTRLF-IALGSKDGY 458


>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
 gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
          Length = 667

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 226/434 (52%), Gaps = 27/434 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   + AE        
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNIKAE------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +P  L +APTRELA+QV + L ++     GV V    GG     + R L+ G  IVVGTP
Sbjct: 75  SPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPDA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAIVFC 251
           I  + + + KD   V I S      DI      V    R N A+V  L       AI+F 
Sbjct: 195 IRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVRFLESEDFDAAIIFV 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   AL+G+++Q  R   L  ++DGR  + IATDVAARG+D+ 
Sbjct: 255 RTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDILIATDVAARGLDVD 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++    
Sbjct: 315 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNIERTMKLTIPEVQ 374

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFL 421
            P+ E + ER     A ++ Q       ++  +  +   LLAK  PE+      +AA  L
Sbjct: 375 LPNPELLGERRLAQFAAKVGQ------QLESSDLDLYRALLAKLQPEEEFDLETLAAALL 428

Query: 422 RI---HRAGLCAPE 432
           ++    R  +  PE
Sbjct: 429 KMAQGERPLILPPE 442


>gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 615

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 267/523 (51%), Gaps = 31/523 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRF 69
           I  A+++ G+ N T +QE  +   L   +  V  AQTG+GKT AFGL L   L  E +  
Sbjct: 13  IVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLPLLELLDFEQNH- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127
                P AL + PTREL +Q+  +L+  Y+K  + V V    GG ++  + R ++ G  I
Sbjct: 72  -----PQALILCPTRELCLQITNDLKN-YSKNMSNVNVVAVYGGANISDQLRQIKRGVQI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D I  K +N S +  VVLDEADEML++GF++DI+ IL ++P  ++  +FSA
Sbjct: 126 VVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTTPDDKKTWLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  +AK Y  D   + +  +N  + +I++   +V   D+  A   I+ ++     
Sbjct: 186 TMPSEVRRIAKKYMTDPFELTMGEKNTGNVNIEHEYYIVRARDKYAAFKRIVDFNPEIFG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+       + L +  +   +L G+LSQQ+R   ++  R+   ++ IATDVAARG
Sbjct: 246 IVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+  L    EN  HRSGRT RAG+ G+S+ +I      +  ++ R      
Sbjct: 306 IDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKIRQIERVIGKKF 365

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---------LAKHDPEKIAA 418
           +    P+   + E+    I+     + ++Q +E+++   +         L K D  K  A
Sbjct: 366 IKGEIPNGFDVCEKQLFAIVHK---VHNVQVNEQQIEQYIPRIMDEFKDLEKEDIIKRFA 422

Query: 419 G--FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
              F R       AP+   P+   + R    D  RA + G G+ D     +   +++GS 
Sbjct: 423 SIEFNRFLDYYKNAPDLNAPLDDRAVRGELGD--RAPR-GTGNSD----YTRLFINLGSV 475

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            +     L+  +C ++ I+ +++G I V+   +F EV    VD
Sbjct: 476 DEFNRGDLLGYICNTAKISGRTVGKIDVKGVYSFFEVPKADVD 518


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 165/525 (31%), Positives = 261/525 (49%), Gaps = 28/525 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
           N+ + I  AL E GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S + L+
Sbjct: 16  NLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILSGIDLS 75

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ 122
             D       P  L +APTRELA+QV       YA+   G  V    GG     + R L+
Sbjct: 76  LTD-------PQVLVLAPTRELAIQVAEAFHK-YAEYLKGFHVLPIYGGQDYGGQLRMLK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G H+VVGTPGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+IL  +PK+R++
Sbjct: 128 RGVHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQV 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I  +A+ Y      V I  +      I  R  +V  S + + +  IL   
Sbjct: 188 ALFSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGGSHKLDILTRILEVE 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F  T+       + L    +   AL+G++ Q +R   +  ++DG   + IATD
Sbjct: 248 PFEGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVIATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERL 359
           VAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++ FV P  +NM    E+ 
Sbjct: 308 VAARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAIEKA 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
            R+    +     PS E I ++  ++  Q     D+I  ++     ++++    +HD  +
Sbjct: 368 TRK---RIELMELPSTEIINDKRIEKFKQR--ISDTIAAEDLGFFTRLIEQYCHEHDVSE 422

Query: 416 IAAGFLRIHRAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFS 470
           + A            P   +  P   V   +R R    A       RD+  G      + 
Sbjct: 423 LEAAAALAAMVQGDTPLLFSAKPEKQVRREERDRPSDEAPFRKKPRRDDMYGDEKREVYR 482

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           + VGS+   +A  ++  +    G++ ++IG I +    + VE+ A
Sbjct: 483 IEVGSEHGVQAGNILGAIINEIGLDPEAIGRISISDAFSTVELPA 527


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 228/435 (52%), Gaps = 29/435 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   + P L ++D+   AQTG+GKT +F L + + L     R
Sbjct: 11  QKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA ++
Sbjct: 71  ---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 128 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA-- 244
           + P I  LA  + ++  R+ +A  +     +  R V     D +   V  +++R   A  
Sbjct: 188 MPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLRDLVRAEEAEL 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+  + +A+DVA
Sbjct: 248 KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +  + + +   
Sbjct: 308 ARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIA 367

Query: 365 VSVVW-------EPAPSVEAIRERDAQRILQDPLF--------------LDSIQGDEKKM 403
             + W        PAP +E+      +R  ++                 +++I  D + +
Sbjct: 368 EKIEWLSGDLSSLPAP-MESFESNSGRRGTKERSGRGRDRNRRDAPASPVENINQDAQSV 426

Query: 404 VDVLLAKHDPEKIAA 418
           VD  +A H  +K+ A
Sbjct: 427 VDTDIAAHGEDKVKA 441


>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
 gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
          Length = 504

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 206/375 (54%), Gaps = 10/375 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EA++  GY   T +Q   +   L  + +L  AQTG+GKT AF L L S       
Sbjct: 13  PAVL-EAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLLS------- 64

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
           R  P  +AP  L +APTRELA+QV        +K     V    GG     + + L+ GA
Sbjct: 65  RVDPNVNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRRGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R   L + +LKA+VLDEADEML +GF DD+E IL  +P   +  +F
Sbjct: 125 HVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQRALF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y KDAV V I S +R    I    + V    + +A+  IL      
Sbjct: 185 SATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVEPFD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  T+A      + LA        L+G+L+Q++R   ++ ++ G+  + +ATDVAA
Sbjct: 245 ASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  VI+ ++  + E  +HR GRTGRAGR G ++ ++    +     L R  N 
Sbjct: 305 RGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLERATNA 364

Query: 366 SVVWEPAPSVEAIRE 380
           ++     PS  A+++
Sbjct: 365 TMEAYELPSPAALQK 379


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 191/344 (55%), Gaps = 7/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G  L+E GY   T +Q   +   L  +D+L  A TG+GKT AF L L   L    +
Sbjct: 17  PALLG-VLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQRLEIGGE 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P AL + PTRELA+QV   +     + GV V    GG    ++ R L+ G H+
Sbjct: 76  ---PPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRGVHV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR  DHI    L +  ++ VVLDEADEMLD+GF + +E IL ++P  R+ ++FSA
Sbjct: 133 VVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244
           T+ P I  +A  + ++ VRV IA E     +   +   A +V  + +  A+  +L     
Sbjct: 193 TLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDMEDP 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC TR  V   T+ L    ++  AL G  SQ+ R   +   R G A + +ATDVA
Sbjct: 253 SSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  +  VI+ ++   PE  +HR GRTGRAGR+G ++ ++
Sbjct: 313 ARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLV 356


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 273/570 (47%), Gaps = 67/570 (11%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ GY   +++Q A + P L  +DV+  AQTG+GKT AF L + S L          
Sbjct: 27  KALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILSRLDLTQ------ 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P AL +APTRELA+QV    E   A   GV V    GG     +   L+ G H+VVGT
Sbjct: 81  TTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 140

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S L+ +VLDEADEML++GF +D+E IL  +P  + + +FSAT+  
Sbjct: 141 PGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDDKNVALFSATMPA 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y  D   + +  +    S+I  R + V+   + +A+  IL     +  IVF 
Sbjct: 201 QIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRILEVENFEGMIVFV 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L       +A++G+++Q +R   +  ++ G+  + +ATDVAARG+D+ 
Sbjct: 261 RTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILVATDVAARGLDVE 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +   + + +     +    
Sbjct: 321 RISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHIEKATRQPLTQMQ 380

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            P+VE +      R      F D+I     + + +D          I A ++R H     
Sbjct: 381 LPTVEDVNSTRLSR------FDDAITEALSQTQRIDAF------RDIVAHYVREH----D 424

Query: 430 APEEI------------TPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGS--------- 466
            PE              TP+ L+   DR  +    R  + G G+R +             
Sbjct: 425 VPEADVAAALAVVAQGETPL-LLDPADRANELRAPREERAGQGTRRDRHDHGGPGGHGGP 483

Query: 467 --------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                         + + ++VG + K E R ++  +    G++RQ  G I ++ D + VE
Sbjct: 484 PRERRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHSLVE 543

Query: 513 VSAD----GVDLLRRTVKLDKGIQLKYLGG 538
           + AD      D LR T    K I+L   GG
Sbjct: 544 LPADLPAGAWDSLRSTRISGKLIELTRDGG 573


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 196/352 (55%), Gaps = 7/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I   L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A N       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKIDASN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 180/589 (30%), Positives = 288/589 (48%), Gaps = 41/589 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L+   ++  T +Q   +   L  +DVL  AQTG+GKT AFGL   + + A  
Sbjct: 15  LPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALAKIDASV 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            +         L + PTRELA+QV   LE   AK  GV VA   GG     + + L+ G 
Sbjct: 75  KQTQ------VLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGT 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +    L +  LK  VLDEADEML++GF +DIE IL + P   +  +F
Sbjct: 129 AIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK + KD + + I +  R+ + I  +A  V    +  A+  +L     +
Sbjct: 189 SATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPYQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  TR       ++L  + F+   LSG+L+Q +R   +  +R G   + + TDV A
Sbjct: 249 RALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVVA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P++  VI+ +L S+ E+ +HR GRTGRAGR G ++       +++ R  ERL   
Sbjct: 309 RGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLRHYERL--- 365

Query: 363 ANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVL-----LAKHDPE 414
            N  V +   P+   + +   Q++   LQ  L  ++   D+ K+  +L      ++   E
Sbjct: 366 TNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQSELSAE 425

Query: 415 KIAAGFLRIHRAG-LCAPEEITPV-------SLVSGRDRFRD--DSRAFKVGGGSRDNFK 464
           +IA   L  H        +E  PV       S  SGR+   D  D R  +   G R    
Sbjct: 426 EIALALLAQHNEQRPLFLKEDRPVREARNERSERSGRNERSDRGDKRKPRAERGGRAADV 485

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520
               + + VG +  A    ++  +   + ++ + IG I++  + + V++      D + +
Sbjct: 486 DFETYKIQVGREHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDIMHV 545

Query: 521 LR--RTVKLDKGIQL---KYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
           L+  R  +   G++L   +     +P  R   + G   +NS  GA +RF
Sbjct: 546 LKKARVRQQPMGLELSDEQVKRAPRPP-RDRDARGGPKRNSGKGAARRF 593


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 210/371 (56%), Gaps = 14/371 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  A+   GY   T +QE  +   L   DV+ +AQTG+GKT  +GL L + +L + N   
Sbjct: 39  ILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPLIARILPKANTSM 98

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL +APTRELA QV   L    A T +   V  GGV +  +   L+ G  I+
Sbjct: 99  SPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRPQADMLRRGVEIL 158

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
             TPGRL DH++ + +N+S ++ VVLDEAD MLD+GF  DI  IL   P+ R+ L+FSAT
Sbjct: 159 TATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLLPQHRQSLLFSAT 218

Query: 189 ISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAK 245
            SP I  LAK++ KD    + +A EN     +     L A++DR+  + ++++L+  G +
Sbjct: 219 FSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQE--LFAVNDREKTDVLIDMLKTRGPE 276

Query: 246 -----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF + + +  R  + L        A+ G+ +Q+ER  AL+  ++G   V +A
Sbjct: 277 GTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGFKNGAIHVLVA 336

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L  VI+ ++  + E+ +HR GRTGRAG KG++  +     +R  E + 
Sbjct: 337 TDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATPEDKRLVEAI- 395

Query: 361 REANVSVVWEP 371
            EA     ++P
Sbjct: 396 -EALTKQTFKP 405


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 212/377 (56%), Gaps = 19/377 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  ++ E
Sbjct: 5   NLSDEIKKAITELGYNEATPVQKAVIPIALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWE 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL I PTRELA+QV  E   +     +  A   G     +++ +L    
Sbjct: 65  ENK------PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L F
Sbjct: 119 HIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQNLFF 178

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K YQ + + + +ASE  + + I +  V +    ++  + ++L      
Sbjct: 179 SATMPEEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDTKEKTLKDVLITENPD 234

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC+T+  V   +++L     +   + G L Q++R  A+   + G++R  IATDVA 
Sbjct: 235 SAIIFCNTKNQVDELSEMLD---LRTSKIHGGLRQEDRFQAMDEFKSGKSRFLIATDVAG 291

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362
           RGID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++ FV  Q   + R  E +   
Sbjct: 292 RGIDVENVSLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTQENPLLRDIEEML-- 349

Query: 363 ANVSVVWEPAPSVEAIR 379
            N+S+  +  P++  +R
Sbjct: 350 -NISIEKKRKPTIIEVR 365


>gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 637

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 268/560 (47%), Gaps = 47/560 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E        
Sbjct: 20  ALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLLNNLKPE------LK 73

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     ++     GV V    GG     + R L+ GA IVVGTP
Sbjct: 74  APQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQLRALRGGAQIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+  A
Sbjct: 134 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPATHQTALFSATMPEA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   V I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 194 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAIIFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 254 TKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 314 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLAIPEVEL 373

Query: 373 PSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHR 425
           P+ E + +R  A+   +  L L+S   D   M   LL K  P      E +AA  L++ +
Sbjct: 374 PNAELLGQRRLAKFAAKVQLQLESSDLD---MYRALLTKMQPQEELDIETLAAALLKMAQ 430

Query: 426 AGLCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGGGSRDNFKG 465
                P  + P      R  FRD                    DSR  + G   +   + 
Sbjct: 431 GE--RPLILPPEPAFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRDGDRPQRRERR 488

Query: 466 SS----WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
            S     + + VG     E R ++  +     I+ + IG I++    + +E+      D 
Sbjct: 489 ESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGDL 548

Query: 518 VDLLRRTVKLDKGIQLKYLG 537
           +    RT  L+K + ++ LG
Sbjct: 549 LSHFTRTRILNKPMNMQLLG 568


>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 591

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/402 (34%), Positives = 216/402 (53%), Gaps = 10/402 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+++ G+   + +Q   +   L   DV+  +QTGSGKT AF +  A   +  N 
Sbjct: 13  PELL-KAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIP-AIERVDGNL 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R     AP  L + PTRELA+QV  E+  L + K GV      GG S  R+ R L++GA 
Sbjct: 71  R-----APQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRDGAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ DH+  K L +  +  ++LDEAD MLD+GFRDDIE IL  +P +R+ + FS
Sbjct: 126 IIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTVFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  L K Y K+ V V I ++      ID     V    +   +  ++     K 
Sbjct: 186 ATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEVDRRSKLEVLCRLIDLQDIKY 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+T+  V   +  L    +    L G++SQ  R   +   R       +ATDVAAR
Sbjct: 246 GIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+E+V + +L  + E+ +HR GRTGRAGR G +V  +      + +++ R     
Sbjct: 306 GLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQIIRFTKGK 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           V  E  PS E + ++     L++    ++++  E K  D ++
Sbjct: 366 VRRERVPSAEEVEQKRTSEFLEN--LRETLEKGEYKRQDTVI 405


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 196/352 (55%), Gaps = 7/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I   L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A N       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKIDASN------PAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYN 346


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 190/342 (55%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  KDV+  AQTG+GKT AF L +   L  +N      
Sbjct: 14  KAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQRLDFDNHNIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++PTRELA+Q   E+  L       V V  GG  + R+ R+L+    ++VGTP
Sbjct: 72  ----ALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNPQVIVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHIR   + + H+K +VLDEADEML++GF +DIE I+   P +R+ ++FSAT+ P 
Sbjct: 128 GRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   + K+   V I S+      +D   V     ++ + +  +      +  IVF  
Sbjct: 188 IKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L    +    + G+LSQQ R+  ++  + G+  + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAARGLDVSG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  V + ++  +P++ +HR GRTGRAG KG+S+ FV P  M+
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEME 349


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 204/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+ ++  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 204/370 (55%), Gaps = 21/370 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------------- 58
           ALSE  Y N T VQ   +   L  +D+LVS+QTGSGKT AF L                 
Sbjct: 65  ALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKPATNRPTE 124

Query: 59  -ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
            A  +  +  R SPA  P  L + PTRELA+QV  E    Y +    +V A  +GG+   
Sbjct: 125 PAKRMKGKRPRPSPAQ-PSLLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGGMPYP 182

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++   L     I+V TPGRL DHI    +++S L  +V DEAD MLD+GF DDI+ I+D+
Sbjct: 183 KQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGFADDIDAIVDA 242

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNA 234
           +P  R+ LMFSAT+   I  LA    KD  R+ IA+     S I+ R      +S ++  
Sbjct: 243 TPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMSHKERL 302

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  +R G 
Sbjct: 303 LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTALRRGN 362

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++  N   
Sbjct: 363 LRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNHNDTF 422

Query: 355 RAERLFREAN 364
           + +R+ R  N
Sbjct: 423 QWKRIERFTN 432


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 10/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +SE GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 20  NLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLANIDIN 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
                  + P  LA+APTRELA+QV    +  YA+   G  V    GG S   + + L+ 
Sbjct: 80  ------LNQPQVLALAPTRELAIQVAEAFQT-YARHLRGFHVLPIYGGQSYDIQFKQLKR 132

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DH++ K L++S++K ++LDEADEML +GF DD+E I+   P KR+  
Sbjct: 133 GPQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQTA 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K Y      V I S+     +I+ +  +V   ++ +A+  +L    
Sbjct: 193 LFSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNKLDALTRMLETEE 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +     + L    ++  AL+G+++QQ R   +  ++ G   + +ATDV
Sbjct: 253 YDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+  L LV++ ++ ++ E+ +HR GRTGRAGRKG ++ F  P+
Sbjct: 313 AARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPR 360


>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 635

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 172/566 (30%), Positives = 269/566 (47%), Gaps = 53/566 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     ++     GV V    GG     + R L+ GA IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRGGAQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAQHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + KD   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  M   LL K  P      E +AA 
Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLTKLQPQEELDVETLAAA 424

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGG-- 457
            L++ +     P  + P  +   R  FRD                    DSR  + G   
Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRDGDRP 482

Query: 458 --GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-- 513
               R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 483 QRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 542

Query: 514 --SADGVDLLRRTVKLDKGIQLKYLG 537
               D +    RT  L+K + ++ +G
Sbjct: 543 GMPGDLLSHFTRTRILNKPMNMQLMG 568


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/343 (39%), Positives = 197/343 (57%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +  F+    
Sbjct: 19  LNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ-- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  +A+   ++ +C GG  + ++   L +  HIVVGTP
Sbjct: 75  --ALVLCPTRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R + L +  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    
Sbjct: 132 GRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFSATYPQE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+   R  IA ++ + S I+ R        R   ++ IL ++   + +VFC+
Sbjct: 192 IEQISARVQRQPQRFEIA-DDVEESAIEQRFYETTKDQRLPLLIAILSHYQPASCVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +
Sbjct: 251 TKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           L LV++ EL+ +PE  +HR GRTGRAG +G++V    PQ M R
Sbjct: 311 LALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNR 353


>gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
 gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
          Length = 460

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 209/367 (56%), Gaps = 11/367 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL +   L  +  R      
Sbjct: 19  LDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             +L + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAHI+VGTPG
Sbjct: 75  --SLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    +++S L  +VLDEAD ML++GF++ ++ I+  +PK+R+ L+FSAT   AI
Sbjct: 133 RILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLLFSATYPEAI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A++  +DA+ + +AS +   S       +     RD A+  +L  H  ++A+VFC+T
Sbjct: 193 QEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQPESAVVFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L    F V+ L G++ Q+ER  AL    +    V +ATDVAARG+D+ +L
Sbjct: 253 KREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVAARGLDVDNL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
           + V + ELS +PE  +HR GRTGRAG +G+++ F   + M R A+    E  + +V  PA
Sbjct: 313 DAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQ---IEEYMDMVISPA 369

Query: 373 PSVEAIR 379
              E ++
Sbjct: 370 ELPEPVK 376


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+++GY + T +Q A +   L+ +DV+ +AQTG+GKT  F L +   LLA  ++  
Sbjct: 27  ILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQLLLANASNSA 86

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   ++     T +   V  GG+ +  +   L+ G  IV
Sbjct: 87  SPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTAALRAGVEIV 146

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++ K LN+S  + +V+DEAD MLD+GF  D++ I++  PKKR+ LMFSAT
Sbjct: 147 IATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKKRQNLMFSAT 206

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKN 246
            S  I  LA ++  + V + +A  N Q +D   + V    SD  + + + +++R    K 
Sbjct: 207 FSGEIKKLASSFLDNPVTIEVARSN-QTADRVTQVVYKVDSDDAKRDIVAHLIRGRQLKQ 265

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF +T+   SR  + L +   +  A+ G+ +Q ER  AL+  + G   V +ATDVAAR
Sbjct: 266 VLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEIDVLVATDVAAR 325

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFV 347
           G+D+ DL  VI+ +L  N E+ +HR GRTGRAG  G  +S+F 
Sbjct: 326 GLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFT 368


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 183/590 (31%), Positives = 288/590 (48%), Gaps = 48/590 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S ++         +
Sbjct: 38  ALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIVLSK------T 91

Query: 74  APLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P AL + PTRELA+QV     R  E+L    G  V    GG     + R L+ G H+VV
Sbjct: 92  EPQALVLTPTRELAIQVAEAFHRYAEYL---KGFHVVPIYGGQDYGTQLRMLKRGVHVVV 148

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+
Sbjct: 149 GTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATM 208

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A+ + K    V I ++      I  R  +V  S + + +  IL +      ++
Sbjct: 209 PAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGGSHKLDVLTRILEFEPFDGILI 268

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    +   AL+G+++Q +R   +  ++DG   + IATDVAARG+D
Sbjct: 269 FVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIATDVAARGLD 328

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++ FV P  +NM    E+  R+    
Sbjct: 329 VDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEKATRK---R 385

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-IAAGFLRIHR 425
           +     PS E I ++   +  Q     D+I  ++ +    LL ++  E  +         
Sbjct: 386 IELMELPSTEIINDKRVAKFKQR--ITDTIAAEDLEFYTRLLEQYCREHDVTELEAAAAL 443

Query: 426 AGLCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSRDNFKGSSW-------F 469
           A +   E  TP+ L S         GRDR     R+ +  G SR   +   +       +
Sbjct: 444 ASMFQGE--TPLLLSSKPERPARQEGRDRPDSRDRSERDRGASRSPKRDGLYSDERRESY 501

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---DGVDLLRRTVK 526
            + VGS    +   ++  +    G++ +++G I V    + VE+ A   + V    R V+
Sbjct: 502 RIEVGSTHGVKPGNILGAILNEVGLDPEAVGRITVNDTYSTVELPAGMPNEVFHEMRKVR 561

Query: 527 LDKGIQLKYLGGEKPDFRGY----KSSGFKSKNSQDGATKRFKRFKGASK 572
           +  G QL+    E+    GY    K +G+K K+        F   K   K
Sbjct: 562 V-CGRQLRLTKSEERSQSGYAGTGKRTGYKPKSDSKSEPSYFTGHKKKRK 610


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 193/332 (58%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A N       A
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN------FA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GAHIVVGTPG
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGAHIVVGTPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+FSAT    I
Sbjct: 138 RIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLFSATYPEGI 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +A E   ++ I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 198 VKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       +VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 257 KQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           E VI+ +++ +PE  +HR GRTGRA ++G ++
Sbjct: 317 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 348


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 214/378 (56%), Gaps = 12/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L +      T +QE  +   ++ KDV+  AQTG+GKT+AF L +      EN
Sbjct: 9   ISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPII-----EN 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
             F+  S   AL + PTRELA+Q+  E+  L     G+ V    GG  V ++   L+   
Sbjct: 64  FDFNQQSIQ-ALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQLNKLRKNV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHI    +++S L ++VLDEAD+ML +GF  ++E I+  +PK R+ L+F
Sbjct: 123 GIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETPKTRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I TLAK + K    +++  +      ++ +AV V    +   ++ +++ +   
Sbjct: 183 SATIPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQATLIEMIKEYRPY 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  V++  + LA   F    L G+LSQ +R   ++  RD   ++ IATDVAA
Sbjct: 243 LAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQLLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  + ++ +HR GRTGRAG KG++V F  PQ   + AE + +E N
Sbjct: 303 RGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLAE-IEKELN 361

Query: 365 VSVVWEPAPSVEAIRERD 382
           + +   P  ++  I +RD
Sbjct: 362 IRL---PKQNIGNIIDRD 376


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 204/353 (57%), Gaps = 11/353 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  +  
Sbjct: 13  PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+FS
Sbjct: 126 ILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT    I ++A     +   V + S    HS I      V  ++ RD+A+  +L +H  +
Sbjct: 186 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++ F   + M R A+
Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 357


>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 627

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 231/449 (51%), Gaps = 25/449 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     ++     GV V    GG     + R L+ GA IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRGGAQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + KD   V I S      DI      V    +++A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNDALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  M   LLAK  P      E +AA 
Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLAKLQPQEELDVETLAAA 424

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
            L++ +     P  + P  +   R  FRD
Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRD 451


>gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 597

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 168/529 (31%), Positives = 268/529 (50%), Gaps = 47/529 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+S  G+   T +QE  +   L    D +  AQTG+GKT AFGL L   L      FS  
Sbjct: 16  AISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLPLLELL-----DFS-Q 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P AL + PTREL +Q+  +L+        V V    GG ++  + R ++ G  IVV T
Sbjct: 70  NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISDQLRQIRRGVQIVVAT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K ++ S ++ VVLDEADEML++GF++DI  IL ++P +++  +FSAT+  
Sbjct: 130 PGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTTPDEKKTWLFSATMPA 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  +AKNY  D   + + ++N  +++ID+   +V   D+  A   I+ ++     IVFC
Sbjct: 190 EVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRPRDKYAAFKRIVDFNPEIFGIVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L +  +   +L G+LSQQ+R   ++  R+   ++ IATDVAARGID+ 
Sbjct: 250 RTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIATDVAARGIDVN 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREAN 364
           ++  VI+  L    EN  HRSGRT RAG+ G+S+ ++        + ++R   + F +A 
Sbjct: 310 NVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELGKIRQIERVIGKQFVKAE 369

Query: 365 V--------SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +          ++     V+A+   D Q     P  +D      K+  DV+  KH     
Sbjct: 370 IPNGFDVCEKQLFALVHKVKAVEVNDDQIGQYLPRIMDEFSDFSKE--DVI--KHFASLE 425

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS------ 470
              FL  +     AP+    VS  +       DSR+ K  GG  D F  + + S      
Sbjct: 426 FNRFLDYYEN---APD--LNVSAAT-------DSRSEK--GGKADRFGRTGYKSDFTRLF 471

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +++GS        ++  +C ++ I+ +SIG I ++   TF EV  D VD
Sbjct: 472 INLGSVDDFTRGDMLGYICNNAQISGKSIGKIDLKGVYTFFEVENDVVD 520


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 268/532 (50%), Gaps = 39/532 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLA 64
           + + + EAL  +G+   + +Q A+  P L E   D++  AQTG+GKT AFG+ +    L 
Sbjct: 12  VSEEVLEALRAKGFEAPSPIQ-ALTIPKLLEGAVDLIGQAQTGTGKTAAFGIPVIE--LC 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E         P AL ++PTREL++Q+  EL  L  K  + +A   GG  +  + + L++G
Sbjct: 69  EGG----GKKPQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMIEIQLQRLRDG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+GTPGR+ D +    L+ S LK  VLDEADEMLD+GF +DIE IL ++   +RMLM
Sbjct: 125 IDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILGATNSDKRMLM 184

Query: 185 FSATISPAITTLAKNYQK--DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT+ P I  +A+ + +  + VR   A  N + ++  Y    V   D+  A+  I+   
Sbjct: 185 FSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIY--FEVRREDKFEALSRIIDVE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VFC TR  V    + L     +V AL G+++Q +R+  +   +D + ++ IATD
Sbjct: 243 QDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKKFKILIATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           VAARGID+ DL  VI+  +    E  +HR GRTGRAG+ G ++ FV P    R+   + R
Sbjct: 303 VAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEY-RKLTMIQR 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIA 417
           EA+  +  E  P    I E   Q   +     ++I   + +      D L+ K      A
Sbjct: 362 EAHTEIRREELPQGRDIVEMKKQHFSEQ--LSEAISAGQHQEYLDFADELIEKTGNASAA 419

Query: 418 -AGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
            A  L++   G     E+ P S V  GR R R      K    S D+  GS+   + VG 
Sbjct: 420 LAAMLQLRFKG-----ELLPQSYVEIGRKRDR------KTWESSADDH-GSTRLFIGVGK 467

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRR 523
                A  ++ ++   + I +  IG I      +FV V+ +     +D  RR
Sbjct: 468 LDGFGAVKMLDLIWEKARIKKYRIGKIDCYDRFSFVNVNFEDAEAIIDAFRR 519


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/532 (29%), Positives = 266/532 (50%), Gaps = 34/532 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           M+ FE I     I +A+ E G+   T +QE  + P L   E D+L  AQTG+GKT AF L
Sbjct: 1   MQTFEEIGLRSEILQAVQELGFEKPTPIQEQAI-PYLLTEETDLLAFAQTGTGKTAAFSL 59

Query: 57  ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            L  ++        P S  + AL + PTREL +Q+ R+++       +      GG S+ 
Sbjct: 60  PLLESI-------DPDSKQIQALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASID 112

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++   L+ G HIVVGTPGR  D I+ K L +  ++ +VLDEADEML++GF+ +++ IL +
Sbjct: 113 KQIDALKRGVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILAT 172

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +PK+++ L+FSAT+   +  +A+ Y     ++++   N    ++ +   +V   DR  A+
Sbjct: 173 TPKEKQTLLFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVVQPRDRYQAL 232

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I   +     IVFC TR         L +  +   AL G+LSQ +R + +   R    
Sbjct: 233 KRIADINPHIYGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHL 292

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP------ 349
           ++ +ATDVAARG+D+ ++  VI+  L  + E  +HRSGRTGRAG+ G+S+ +I       
Sbjct: 293 QILVATDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGK 352

Query: 350 -QNMQRRAERLFREANVSVVWEPAPS-----VEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            + ++R+  + F    +    E   +     ++ ++E +       P +L  +    + +
Sbjct: 353 IKTIERKIGKKFDRKQIPTSQEICENRLLSLMDKVKEVNVNEEEIAP-YLPHVYDKLESL 411

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPE--EITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
               L KH    ++  F R       AP+    T      G  + R+  R  K  GG+R 
Sbjct: 412 SREELIKH---FVSYEFNRFLEYYKNAPDLNAATRRDRDRGDRKERNGDRKDKKRGGNRI 468

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +F   S F +++GSK +   + L+  +     +    +G I +Q   +F E+
Sbjct: 469 DF---SRFFINLGSKDELNPKNLLSFIDSQPSLKNVEVGKIDIQKSFSFFEI 517


>gi|77359086|ref|YP_338661.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873997|emb|CAI85218.1| putative ATP-dependent RNA helicase; putative cold-shock protein;
           could be specific for rRNA folding [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 462

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 224/413 (54%), Gaps = 8/413 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 11  LPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 71  FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P  R+ L+F
Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPTNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK    + V V +  E  + +   Y   +     R   +  +L     +
Sbjct: 185 SATFPRAIEAVAKRVLSNPVMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    L +  F  V+L G+L Q++R   L    +  A + +ATDVAA
Sbjct: 245 SCVVFCNTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ + +  +HR GRTGRAG+KG++  +  +    +  ++      
Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEAEAFKIAQIGDHYER 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            V+ EP PS  ++ E+   +     L LDS +  + +  D+L A    + IA 
Sbjct: 365 DVIPEPMPSF-SLLEKPPYKPEMVTLMLDSGKKQKVRAGDILGALTGKDGIAG 416


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 10/366 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL  + +         AL I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QTLDKKQEGIQ------ALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+VGTPGRL DH++ + +N+SHLK V+LDEADEMLD+GF  DIE IL  +   
Sbjct: 115 SLKQVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASND 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I S+    + ID   V +  +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + ++VF  T+  V   T+      +    + G+L+Q +R + L+  + G+  + +
Sbjct: 235 DVQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRA 356
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMS+ FV P  +   +  
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354

Query: 357 ERLFRE 362
           ERL R+
Sbjct: 355 ERLTRK 360


>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 529

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/507 (29%), Positives = 250/507 (49%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +        + F  
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPII-------ENFEN 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 74  LEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + + +RML FSAT+  
Sbjct: 134 PGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTNEDKRMLFFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AK + K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 194 EIMKVAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 252 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 312 INDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIK 370

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   D E I A  L++  +
Sbjct: 371 KEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAENIVASLLKLSYS 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 431 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVE 471

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 472 FIIKKAKVKQSYIKNAEVYEGFSFVSV 498


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 206/354 (58%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I  A+++ G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N+         AL IAPTRELAVQ   EL     +  V V    GG S+ ++ +
Sbjct: 61  NKIDVTNNVVQ------ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           EA+  +G+   T +Q  ++   L  E D++  ++TGSGKT AFGL +  ++  E+ R   
Sbjct: 14  EAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPILDSI-DESIR--- 69

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELA+QV  EL  L  K  + V    GG  +  + R L+ G HIVVGT
Sbjct: 70  --EVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRALEGGVHIVVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI    LN+  ++  VLDEAD MLD+GF++DIE I  ++PK++R+LMFSAT+  
Sbjct: 128 PGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKRVLMFSATMPM 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-----RYHGAKN 246
            +  LAK Y ++   V ++ +     +++   +      R + +  IL      ++G   
Sbjct: 188 DVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPHRRFDLLTKILSDESNEFYG--- 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+A     +  L    F+  AL+G++SQ  R       +  + ++ +ATDVAAR
Sbjct: 245 -IVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P++  VI+  +  NPE  +HR GRTGR G+KG ++  I     RR   + ++A V 
Sbjct: 304 GLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRYITKQAGVE 363

Query: 367 V 367
           V
Sbjct: 364 V 364


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 206/354 (58%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +R    +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKI--DTNR----NVVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 10/362 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL L   +  + +RF   S 
Sbjct: 18  LNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DANRFITQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV   L  L  Y     V+ +C GGV    +R  L +  H++V TP
Sbjct: 75  ---LVLCPTRELADQVATALRKLARYMPNIKVLTLC-GGVPFGAQRDSLIHAPHVIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L+ ++LDEAD MLD+GF D ++ ++  +P+KR+ L+FSAT    
Sbjct: 131 GRLLDHLKKETVSLEALQTLILDEADRMLDMGFADALDEVISWAPEKRQTLLFSATWPAE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++  Q+D + + I +     + ++ R   V+   +   +  +L  +   + +VFC+
Sbjct: 191 IAAISRRIQRDPLTIEIDTHGELPA-VEQRFYEVSRGGKVGLLQTLLSQYQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L      V+AL G++ Q++R   L    +G +RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAARGLDIKA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L       + W+P 
Sbjct: 310 LEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLGARLQWQPL 369

Query: 373 PS 374
           PS
Sbjct: 370 PS 371


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  RF     
Sbjct: 22  LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E   +S I  R   VA ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 170/529 (32%), Positives = 275/529 (51%), Gaps = 39/529 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   + +Q A +    + +DV+  AQTG+GKT AF L + S L    DR     
Sbjct: 168 AVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRL----DRSQ--K 221

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P AL ++PTRELA+QV     E+     GV V    GG S   +   L+ GAHIVVGTP
Sbjct: 222 KPQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGTP 281

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++S LK +VLDEADEML++GF++D+E IL  +P+ ++  +FSAT+  +
Sbjct: 282 GRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPAS 341

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K Y +D   V I S+ R   +I  + +LV    + +A+  IL        I+F  
Sbjct: 342 IRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFAR 401

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    F   A++G+++Q +R   +  +RDGR  + +ATDVAARG+D+  
Sbjct: 402 TKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVER 461

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE- 370
           +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR  R    A  S + E 
Sbjct: 462 ISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPR--ERRLLRSIERATKSSIEEM 519

Query: 371 PAPSVEAIRE----RDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAGFL 421
             P+V+ + E    + AQ I   L DP  +D  +G    +++    +H+     IAA   
Sbjct: 520 QLPTVDEVNETRKAKFAQSITESLADPQ-VDLFRG----LINSYAEEHETPLADIAAALA 574

Query: 422 RIHRAG---LCAPEEITPVSLVSGRDRF----RDDSRAF--KVGGGSRDNF-----KGSS 467
              ++G   L   + I      + R         D+R+   +  G     F     K  +
Sbjct: 575 TQSQSGDEFLLKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMA 634

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            + ++VG +Q+     ++  +    G+N +  G I +  + + VE+ AD
Sbjct: 635 VYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPAD 683


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 163/526 (30%), Positives = 258/526 (49%), Gaps = 35/526 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL E G+V  T +Q   +   L  +D L  AQTG+GKT AF L L + + L +++     
Sbjct: 20  ALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKINLKQHN----- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHIVVGT
Sbjct: 75  --PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGAHIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P+  + ++FSAT+ P
Sbjct: 133 PGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQRILFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + T+   Y +D  RV++A  N     +     +V   ++D A+  +L       +IVF 
Sbjct: 193 MVKTIVDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLLETEEIDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    S+V   
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMVEIE 372

Query: 372 APSVEAIRERD----AQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            P  + + E         +  D  F  L++      K+ + L  + D   IAA  L+  +
Sbjct: 373 LPHRDQVAEARLAVLGAELAADKEFVALEAFSDLITKLQETL--EVDASTIAAMLLKRQQ 430

Query: 426 AG----LCAPEE-ITPVSLVSGRDRFRDD-----------SRAFKVGGGSRDNFKGSSW- 468
                    P+  I  V     R   R D            R  +   G R  +    + 
Sbjct: 431 GKRPLFYKGPDPMIAAVERSKNRRPERGDRGDRPERGDRPERGDRPDRGERRQYNNDDFD 490

Query: 469 -FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + L VG  Q  + + ++  L    G  + +IGAI++ P  T+V++
Sbjct: 491 TYQLEVGRDQGVQVKDIVGALANELGFTKGAIGAIKLAPGHTYVQL 536


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 226/426 (53%), Gaps = 17/426 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDVE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                  S P  L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  E------SFPQLLVLAPTRELAIQVAEAFQ-VYASFSKKIRVLPIYGGQSYDNQIRQLKR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DHI+ K L +  LK +VLDEADEML +GF DD+E IL  SPK+++  
Sbjct: 126 GVQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + + Y  +   V IAS+    S I  R   VA   +  A+  IL    
Sbjct: 186 LFSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHKLEALTRILEVEQ 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+ +       L+   + V  L+G++ Q+ R   ++ ++ G   + IATDV
Sbjct: 246 FDGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R   ++ +  
Sbjct: 306 VARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLLFQIEKTT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKH--DPEKIA 417
             S+   P PS+  + E    R  +    +++I+ D  +    +++++ A+   DPE + 
Sbjct: 366 KQSIEQMPIPSISEMNESRLVRFKES--VVEAIEDDSIQSLIPIIEMIKAETEADPEVLM 423

Query: 418 AGFLRI 423
           A   +I
Sbjct: 424 AALAKI 429


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  RF     
Sbjct: 22  LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E   +S I  R   VA ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 222/417 (53%), Gaps = 14/417 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I + L ++G+   T +QE ++   L+  KD++  A TG+GKT+AFGL L   LL E   +
Sbjct: 16  ILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAFGLPLID-LLKEKTGY 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A     + +APTRELA+QV  E+     K  +      GG S+  ++R L+ G  IVV
Sbjct: 75  VQA-----VILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSIELQKRRLKEGVDIVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GT GR+ DHI  K LN+S +   +LDEADEML++GF DDI+ IL  +   + M MFSAT+
Sbjct: 130 GTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILTHTNPTKNMFMFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LAK Y K    V I       S I +    V   D+  A+  I         ++
Sbjct: 190 PEEIKRLAKQYMKKPEFVRIEKSKMLTSQIYFE---VKEQDKFEALCRIRDAVEDFYGLI 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+         L +  +   A+ G+LSQ +R   L+  RD +  + +ATDVAARGID
Sbjct: 247 FCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKKINMLVATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  VI+  +  + E+ +HR GRTGRA +KG+++  +  +  R+   + + A   +  
Sbjct: 307 IDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYRKLRLIQKLAKAEIKK 366

Query: 370 EPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           E  PS++     ++   ++ ++D + L+   GD   M + LL ++D E I A  L++
Sbjct: 367 EKLPSIQQAIEYKKLSVKKAIED-VELNKNDGDYLTMAEELLGQNDAELIIAKLLKL 422


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 183/340 (53%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S  G+   T +Q   +   L  +DV+  AQTG+GKT AF L +   L   N       
Sbjct: 15  AISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   E+  L       V V  GG  + R+   L++   I+VGTPG
Sbjct: 72  ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHPQIIVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L + H+K +VLDEADEML++GF DDIE I+  +P  R+ L+FSAT+ P I
Sbjct: 129 RILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + KD  +V I ++      ID   V V   ++ + +         +  IVFC T
Sbjct: 189 KRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   +K L    +    L G+L+Q  R+  +   + G+  + +ATDVAARGID+  +
Sbjct: 249 KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +P+  +HR GRTGRAG+ G+S+ F  P  M
Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEM 348


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/486 (31%), Positives = 242/486 (49%), Gaps = 31/486 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   T +QE  +   +  KD++  A+TG+GKT AFG+ +   +   
Sbjct: 8   NLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMVEAI--- 64

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                P S  +  L + PTRELAVQV  EL  +    G+      GG     + + L+  
Sbjct: 65  ----RPTSKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVKALEEL 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGRL +H+R + +  S ++  VLDEAD+MLD+GF D+ E IL   P++R+ L+
Sbjct: 121 PHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPERRQTLL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LA+ Y KD   +    E           + +    +  A+  +L     
Sbjct: 181 FSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLLDQEKP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TR  V    K L E  +  + L G+L Q +R N L   + G   + +ATDVA
Sbjct: 241 ELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREA 363
           ARG+D+  +  V + ++  +P++ +HR GRTGRAG  G  + FV P++ +   E + +  
Sbjct: 301 ARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKD-KTALEAIEQAI 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--------EKKMVDVLLAKHDPEK 415
           +  +  +PAP      E++ + +      ++ I+G+         +   + LL   DP  
Sbjct: 360 DHQITSKPAPGGAESTEKNIEAV------IEKIRGEIEIRDLSFYRDYAESLLNSGDPAT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK-VGGGSRDNFKGSSWFSLSVG 474
           I A  LRI    L   EE   + L    +    D +A K  G G+    KGS  +S   G
Sbjct: 414 ILAAALRI----LSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGS--YSKGYG 467

Query: 475 SKQKAE 480
            K + +
Sbjct: 468 HKDEGD 473


>gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
 gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
          Length = 634

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 171/557 (30%), Positives = 272/557 (48%), Gaps = 43/557 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L + +        
Sbjct: 17  IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  IV
Sbjct: 70  PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQGPQIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P + +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + +  +   V I S      DI      V    ++ A+V  L       AI
Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
               P+ E +  R     A R+ Q    L+S   D+ +    LLAK  P      E +AA
Sbjct: 370 EVELPNAELLSTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423

Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFK--- 464
             L++    R  +  P+ +               G DRF    R  + G   R   +   
Sbjct: 424 ALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRFARRERDERGGDRPRRERREVG 483

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520
               + + VG     E R ++  +     I+ + IG IR+    + +E+      D +  
Sbjct: 484 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTH 543

Query: 521 LRRTVKLDKGIQLKYLG 537
             RT  L+K + ++ +G
Sbjct: 544 FTRTRILNKPMNMQLIG 560


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 183/340 (53%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S  G+   T +Q   +   L  +DV+  AQTG+GKT AF L +   L   N       
Sbjct: 15  AISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   E+  L       V V  GG  + R+   L++   I+VGTPG
Sbjct: 72  ---ALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQINSLKSHPQIIVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L + H+K +VLDEADEML++GF DDIE I+  +P  R+ L+FSAT+ P I
Sbjct: 129 RILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSDRQTLLFSATMPPQI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + KD  +V I ++      ID   V V   ++ + +         +  IVFC T
Sbjct: 189 KRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   +K L    +    L G+L+Q  R+  +   + G+  + +ATDVAARGID+  +
Sbjct: 249 KRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILVATDVAARGIDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +P+  +HR GRTGRAG+ G+S+ F  P  M
Sbjct: 309 THVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEM 348


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 205/369 (55%), Gaps = 13/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALIGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D + + +ASE  + + I +  V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDDPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    NV++  +
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNVTIEKK 356

Query: 371 PAPSVEAIR 379
             P+V  ++
Sbjct: 357 RKPTVIEVK 365


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 204/353 (57%), Gaps = 11/353 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  +  
Sbjct: 22  PELL-NTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKRF 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GAH
Sbjct: 81  RVQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGAH 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+FS
Sbjct: 135 ILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT    I ++A     +   V + S    HS I      V  ++ RD+A+  +L +H  +
Sbjct: 195 ATFPKQIKSVADRIMNNPEMVKVES-THDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 254 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++ F   + M R A+
Sbjct: 314 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQ 366


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 200/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  RF     
Sbjct: 22  LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E   +S I  R   VA ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVAETERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKRDVEWHP 372


>gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2]
 gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 469

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +        DR +P   
Sbjct: 29  LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL + PTRELA QV  E+  L  A+  + V    GGV    +   L+NGAHIVVGTP
Sbjct: 82  AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R+ L+FSAT    
Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLFSATYPDG 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I +LA  + +D   V +A+   QHS   I  R   V   ++ + +  +L +   +++I F
Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIAQRWYEVGTREKVSTVAKLLAHFRPESSIAF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+
Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360
            DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++           + +Q RA + F
Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 213/394 (54%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 70  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 122

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 123 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 181

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 182 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 241

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++++L ++   +A+VFC
Sbjct: 242 GIEQISARVQRQPVNVEV-DDGDEAPAIEQLFFETTREKRLPLLISVLSHYQPASAVVFC 300

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 301 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 360

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 361 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKLKWT 419

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  +     R A  +L+  +    I G  K  +
Sbjct: 420 PADQL----SRSANTMLEPEMVTLCIDGGRKAKI 449


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++++L ++   + +VFC
Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398


>gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
 gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
          Length = 458

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 200/339 (58%), Gaps = 8/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I + L   GY ++T++Q   L   L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 10  PELI-DNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKL--DVK 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF   S    L + PTRELA QV +E+  L      + V    GGV +  +   L++GAH
Sbjct: 67  RFCIQS----LVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+  + LN+ ++  +VLDEAD ML++GF  D+++I+   P++R+ L+FS
Sbjct: 123 IIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+    + V V +AS +   S   +   + +  DR  A+  +L  H   +
Sbjct: 183 ATFPKQIQKVAEQIMFEPVMVKVASTHDSSSIEQHFYQIDSNKDRPKALRLLLLQHRPDS 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAAR
Sbjct: 243 AVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  L++VI+ EL+ + E  +HR GRTGRAG KGM++
Sbjct: 303 GLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMAL 341


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D + + +ASE           V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQGLIKRYQDDPMVIEMASEKTN----PILHVEIQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKVRTDENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPAN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+ D+  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 196/349 (56%), Gaps = 10/349 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P+++ + L+E GY   T +Q   +   L  +D++  AQTGSGKT AF L + + L A+  
Sbjct: 20  PELL-QVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNKLTAQIC 78

Query: 66  ---NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +    A  P   AL + PTRELA+QV          T V  A+  GGVS+  + + 
Sbjct: 79  LQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSIDAQAQI 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL DH+R   LN++ L+ +V DEAD MLD+GF+D+I+ I+   PK R
Sbjct: 139 LAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVKQLPKTR 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   +I  L+++  +D  ++ +   N    +ID R   V  SDR  A+V  L 
Sbjct: 199 QTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVD-SDRKLALVTHLI 257

Query: 241 YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             G  +  ++F   + +  +    L +      A  G+LSQ  R   LQ  +DG  RV +
Sbjct: 258 ESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGEVRVLV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ DL  VI+ EL    E+ +HR GRTGRAG KG+++ ++
Sbjct: 318 ATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLL 366


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 258/527 (48%), Gaps = 49/527 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +     +     
Sbjct: 20  ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHIVVGTP
Sbjct: 75  -PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + T+   Y ++  RV++A  N     +     +V   ++D A+  +L       +IVF  
Sbjct: 194 VKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR-------- 361
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ +        
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 373

Query: 362 ----EANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEK 415
               E   + V +    +E  +E  A       +    +S++ D   +  +LL +   ++
Sbjct: 374 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLLKR---QQ 430

Query: 416 IAAGFLRIHRAGLCAPEE-------ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             +    +    + A  E              +GRD            GG R NF    W
Sbjct: 431 GKSPLFYVGEDPMIAAIERDKNRRKDRREDRDNGRD------------GGGR-NFNTQDW 477

Query: 469 --FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             + L VG +Q  + + ++  L    G+ + SIGAI++    T+V++
Sbjct: 478 DTYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 524


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score =  221 bits (564), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 169/534 (31%), Positives = 277/534 (51%), Gaps = 37/534 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS+ GY + + +Q A + P L   DV+  AQTG+GKT AF + + S +          
Sbjct: 24  KALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSKIDLTQ------ 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +P AL +APTRELA+QV        A   G+ V    GG S   +   L+ GAH+VVGT
Sbjct: 78  KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGT 137

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S L  +VLDEADEML +GF++D+E IL  +P+ +++ +FSAT+  
Sbjct: 138 PGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQVALFSATMPG 197

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  ++K Y  D V + + S+    S+I  R V VA   + +A+  +L     +  I+F 
Sbjct: 198 AIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFEAMIIFV 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    F   A++G++ Q +R   +  ++ G   + +ATDVAARG+D+ 
Sbjct: 258 RTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G + +FV P  +++ +  E+  R+    + 
Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQPLAEMQ 377

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI----QGDE----KKMVDVLLAKHDPE--KIAA 418
               PSV+ +   +AQR+ +   F DSI      D     +KM++    +HD     IAA
Sbjct: 378 L---PSVDDV---NAQRVSK---FGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAA 428

Query: 419 GFLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---NFKGSSWFSLSVG 474
                 R G         P +    R+     +R F  G  +R      +  + + ++VG
Sbjct: 429 ALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQELATYRIAVG 488

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524
            + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT
Sbjct: 489 KRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRT 542


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 524

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 200/369 (54%), Gaps = 11/369 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + L E+GY   T +Q+  +   L   KD++  AQTG+GKT AFGL +   L  ++     
Sbjct: 15  KVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLPVLELLPEKSKNVQ- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELA+QV  EL  L  K  + +    G  S+  + R L+ G  IVVGT
Sbjct: 74  -----ALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQLRSLKKGIDIVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH++   L I  +  +VLDEADEML++GF DD+  I++++  ++R L+FSAT+  
Sbjct: 129 PGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTGHEKRTLLFSATMPF 188

Query: 192 AITTLAKNYQK--DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            I  +AKNY +  D  +VN        +D  Y  V  A  D+  A+  I+        +V
Sbjct: 189 EIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAA--DKFEALCRIIDIEKDFYGLV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V      L E  +   AL G++SQ  R   L   +  +  + IATDVAARG+D
Sbjct: 247 FCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINILIATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + +L  VI+  L  +PE+ +HR GRTGRAG+ G+++  I     R+ + + + A   +  
Sbjct: 307 IHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKLQFIQKAAKTDIRK 366

Query: 370 EPAPSVEAI 378
           E  P +E I
Sbjct: 367 EKLPKIEDI 375


>gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 529

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 151/507 (29%), Positives = 250/507 (49%), Gaps = 34/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q+  +   L+ +KD++  AQTG+GKT AF L +       +     
Sbjct: 21  KVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQ- 79

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 80  -----AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  +   +RML FSAT+ P
Sbjct: 135 PGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AK + K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 195 EIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 253 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 313 INDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIR 371

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   + E I A  L++  +
Sbjct: 372 KESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLTYS 431

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 432 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVD 472

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + + + +  I    V    +FV V
Sbjct: 473 FIVKKAKVKQAYIKNAEVYDAFSFVSV 499


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++++L ++   + +VFC
Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSANTMLEPEMVTLCIDGGRKAKI 398


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/469 (31%), Positives = 234/469 (49%), Gaps = 25/469 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL +   +  +N
Sbjct: 22  LSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDN 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I+PTREL +Q   EL  L     V V V  GG  + R+ + L++   
Sbjct: 82  PNIQ------ALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKHHPQ 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI    + + H++ +VLDEADEML++GF +DIE I+  +P +R+ L+FS
Sbjct: 136 ILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQTLLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  + + +  D   V I ++      +D   V     ++ + +  ++       
Sbjct: 196 ATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDL 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   +K L    +    + G+L+Q  R+  ++  + G   + +ATDVAAR
Sbjct: 256 TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G S+ FV P  M+     E+L R  
Sbjct: 316 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEIEKLTRVR 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            + +  +P  + EA + + A      D L         K+  + LL  HD   + A  L 
Sbjct: 376 MLPL--KPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEQLLESHDATDLVAALLN 433

Query: 423 --IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
                A    P +ITP   +    R           GG R ++ G + +
Sbjct: 434 NMTKEAASEVPVKITPERPLPRHHR-----------GGKRTDYHGGNHY 471


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 212/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPA 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++++L ++   + +VFC
Sbjct: 191 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DLELV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSANTLLEPEMVTLCIDGGRKAKI 398


>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
 gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 200/364 (54%), Gaps = 8/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A N
Sbjct: 16  LPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GA
Sbjct: 76  ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + ++   V +A E   ++ I  R   V    R +A+  +L ++   
Sbjct: 190 SATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDGRLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQKR 368

Query: 366 SVVW 369
            V W
Sbjct: 369 EVEW 372


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 211/357 (59%), Gaps = 13/357 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+   G+ + + +Q   +   +  +DV+  AQTG+GKT AF L +    LA  
Sbjct: 77  LPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPI----LARI 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D  + A  P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 133 D--TSARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGA 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 191 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  ++ +Y  D   V + ++ R +++I  R +  A  ++ +AI  +L      
Sbjct: 251 SATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLEVTEFD 310

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+       + L    F   A++G+++QQ+R   + M+RDGR  + +ATDVAA
Sbjct: 311 AMIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAA 370

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G + +FV P     R  R+ R
Sbjct: 371 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTP-----RERRMLR 422


>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 203/344 (59%), Gaps = 6/344 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I  ++   G+   T VQEA +   L   D++ ++QTGSGKT+A+GL +   +L +  
Sbjct: 10  PRLIS-SIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQRMLKQR- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           RF    A  A+ +APTRELA+QV   ++ L       + + IG  S   + + L+    +
Sbjct: 68  RFE-HRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRKNPEV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFS 186
           ++ TPGRL DHIR K +++ HL+ +VLDEAD MLD+GFRDD+  I +S+P  KR+ ++FS
Sbjct: 127 LIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFS 186

Query: 187 ATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244
           AT+    +  +     +   R+ I   N QH  I+ R      L+ ++  +V++++    
Sbjct: 187 ATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSEDY 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+    R  K+L ++     ++ G++ Q +R   L+  R GR  V +ATDVA
Sbjct: 247 RQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  L  VI+ +L  NPE+ +HR+GRTGRAG  G+++ ++
Sbjct: 307 ARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLV 350


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 135/365 (36%), Positives = 201/365 (55%), Gaps = 8/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   
Sbjct: 15  SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
           N       A  A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++G
Sbjct: 75  N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+
Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  L++ + ++   V +A E   ++ I  R   V   +R +A+  +L ++  
Sbjct: 189 FSATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVA
Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +   
Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQK 367

Query: 365 VSVVW 369
             V W
Sbjct: 368 RDVEW 372


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 272/535 (50%), Gaps = 38/535 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L +    LA  
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPI----LARI 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D+     +P AL +APTRE A+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 165 DK--SVRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVL--------LAKHDP-EK 415
            +     P+V+ +   D +++     F DSI    E K +D+          A   P E 
Sbjct: 463 PLHEMELPTVDQV--NDFRKV----KFADSITKSLEDKQMDLFRTLVKEYSQANDVPLED 516

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--------------SRD 461
           IAA      ++G    +E+ P        R   D       G                RD
Sbjct: 517 IAAALATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRD 576

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           + +  + + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D
Sbjct: 577 D-ENLATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKD 630


>gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 641

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 213/399 (53%), Gaps = 12/399 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK FE   I + I +A+ E G+ + T VQE ++   L E  DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           L   +  +           AL ++PTREL +Q+   L     Y K G+ V    GG S+ 
Sbjct: 61  LIQKVNPQQKHTQ------ALILSPTRELCLQISDSLSDFSKYIK-GLTVVPVYGGTSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+V TPGRL D I      + ++  VVLDEADEML++GF + I  IL+ 
Sbjct: 114 TQIKALKKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILEC 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK R  L+FSAT+S  I  +A+NY  +   + + S N     +++   +V   D+  A+
Sbjct: 174 VPKDRNTLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+ +  AI+FC T+         L    +   AL G+LSQQ+R   +Q  R    
Sbjct: 234 KRIVDYYPSIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ ++    + +
Sbjct: 294 QFLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
              + +  + + V    P  +AI  +   +++   L  D
Sbjct: 354 MHAIEKVISKAFVEGEIPDAKAICSKQLYKVMDQILKAD 392


>gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146]
 gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 172/557 (30%), Positives = 271/557 (48%), Gaps = 43/557 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L + +        
Sbjct: 17  IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IV
Sbjct: 70  PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P + +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + +  +   V I S      DI      V    ++ A+V  L       AI
Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
               P+ E +  R       R+ Q    L+S   D+ +    LLAK  P      E +AA
Sbjct: 370 EVELPNAELLSARRLAKFGARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423

Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFK--- 464
             L++    R  +  P+ I               G DRF    R  + G   R   +   
Sbjct: 424 ALLKMAQGERPLILPPDPIVERRPRREFRERDERGGDRFARRERDERGGDRPRRERREVG 483

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520
               + + VG     E R ++  +     I+ + IG IR+    + +E+      D +  
Sbjct: 484 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTH 543

Query: 521 LRRTVKLDKGIQLKYLG 537
             RT  L+K + ++ +G
Sbjct: 544 FTRTRILNKPMNMQLIG 560


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/332 (38%), Positives = 195/332 (58%), Gaps = 9/332 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +QE  L P +  KD+L  AQTGSGKT+AF +AL   LL  N RF    A   L
Sbjct: 2   GFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIAL---LLKINPRFFGVQA---L 55

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA QV +E+  +  Y     V+++C GG+    +   L++GAHIVVGTPGRL 
Sbjct: 56  VMCPTRELADQVSKEIRKVARYQDNIKVLSLC-GGMPFGPQIGSLEHGAHIVVGTPGRLM 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           +H+R   L ++ L  +VLDEAD MLD+GF D I  I++ +P  R+ L+FSAT    I  +
Sbjct: 115 EHLRKGTLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +K +Q   + + + ++     +I+   V     D+   ++  L++   + AIVFC+T+A 
Sbjct: 175 SKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAE 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L+EH     A+ G+L Q++R   L    +  + V +ATDVAARGID+ +++LV
Sbjct: 235 SQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ + + + +   HR GRTGRAG  G++V ++
Sbjct: 295 VNYDTTRDTDVHTHRIGRTGRAGAAGIAVNLV 326


>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 624

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   TL
Sbjct: 12  ESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALANQDTL 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   DR    + P  L I+PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIGELAANRKQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +P I TLA+    D +R++I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLN 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 EEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAI 355


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 202/365 (55%), Gaps = 7/365 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   + P L ++D+   AQTG+GKT +F L + + L     R
Sbjct: 40  QKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 99

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA ++
Sbjct: 100 ---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQDRKLERGADVL 156

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 157 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 216

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA-- 244
           + P I  LA  + ++  R+ +A  +     +  R V     D +   V  +++R   A  
Sbjct: 217 MPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLRDLVRAEEAEL 276

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+  + +A+DVA
Sbjct: 277 KNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQLTLLVASDVA 336

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +  + + +   
Sbjct: 337 ARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAKYLDAIEKLIT 396

Query: 365 VSVVW 369
             V W
Sbjct: 397 EKVEW 401


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/519 (30%), Positives = 256/519 (49%), Gaps = 41/519 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQ-EAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLL 63
           +I + I +AL E G+   T +Q +AI  P L+  KD++  AQTG+GKT AFG+ +     
Sbjct: 10  DIKKDILKALKELGFEVPTPIQVQAI--PHLKMGKDIIGQAQTGTGKTAAFGIPMI---- 63

Query: 64  AENDRFSPASAPLALAI-APTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDL 121
              +R +P +  + + I APTREL+VQV  E++       GV      GG  +  + + L
Sbjct: 64  ---ERVNPKNKAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPISTQIKAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+VGTPGR+ DHI  K L +  +  VVLDEAD+MLD+GF++D+E IL  +P +R+
Sbjct: 121 KRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKETPTERQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSATIS  I  +A+ Y K   ++ +A +      I      V   ++  A+  IL  
Sbjct: 181 TAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEALCRILDM 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+FC T+ SV   T+ L    +   A+ G+L Q +R   ++  R+    + +AT
Sbjct: 241 DKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ D+E+V++ ++  + E  +HR GRTGRAG++G++  +      R  + L  
Sbjct: 301 DVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRTLKALES 360

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEKIAA 418
                +V    P+V  + E+    I  D +     +G   +    V+ L   H+   IAA
Sbjct: 361 YIKGKIVRRKIPTVNDVVEKQKDSI-ADQIHAVIEKGGLTEYTNFVEKLSDDHNSMDIAA 419

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----FSLSVG 474
              ++                       + D+  FKV     D  K          +++G
Sbjct: 420 ALFKMLTE--------------------KSDTELFKVAENISDTEKEYKADMVRLFINIG 459

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                + + ++  +   +GI+   +G I +    TFVEV
Sbjct: 460 KSHGVKPKDILGAVAGEAGISGDVVGIIDMYDKFTFVEV 498


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 146/446 (32%), Positives = 236/446 (52%), Gaps = 32/446 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  KD++  AQTG+GKT AFG+ +   +    D          +
Sbjct: 2   GFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFIQ------GI 55

Query: 79  AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            IAPTRELA+QV  EL  + Y K   V+++  GG  ++R+ R L+N  HI+VGTPGR+ D
Sbjct: 56  VIAPTRELAIQVSEELYKIGYGKRTKVLSIY-GGQDINRQIRALKNKPHIIVGTPGRILD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K + + H+   +LDEADEML++GF DDIE IL   P++R+ L+FSAT+   I  +A
Sbjct: 115 HINRKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + K+   V + ++    S I+   + V   ++ + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMKEPQIVRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    +    + G+LSQ +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN------MQRRAERLFREANVSVVWE 370
           + ++  +PE+ +HR GRTGRAG+ G+++ F+ P+       ++R  +R     +   + E
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERMDAPTLDE 354

Query: 371 PAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
                + A+ E+  Q I ++ L         K+  D LLA+ D   +    L++    L 
Sbjct: 355 ALEGQQKAVMEKIMQTIEENNL------ESYKEAADELLAQKDASTVVQAVLKM----LT 404

Query: 430 APEEITPVSLV------SGRDRFRDD 449
              + TPV L       S RDR  +D
Sbjct: 405 KEPDTTPVKLTEEKPLPSKRDRKPND 430


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 202/369 (54%), Gaps = 7/369 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+++GY + + +Q+A     +  +D++  AQTG+GKT AF L L   L       S  
Sbjct: 84  KTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL------ESGQ 137

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV    + +      + V    GG     +   L+ G  +VVGT
Sbjct: 138 KTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGVDVVVGT 197

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L+ S L ++VLDEADEML +GF DD+E+IL+  PK+R++++FSAT+ P
Sbjct: 198 PGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLFSATMPP 257

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y  D   V I ++++    I  RA+ V +S +  A+  +L   G +  I+F 
Sbjct: 258 EIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGEGVIIFA 317

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L     QV  L+G++ Q +R   ++ +R G   V +ATDVAARG+D+ 
Sbjct: 318 RTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAARGLDVE 377

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R     +    
Sbjct: 378 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQPIEMME 437

Query: 372 APSVEAIRE 380
            P   AI +
Sbjct: 438 VPGNTAINQ 446


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 8/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           A++E+G+ + T +Q A++   L  +DV+  AQTG+GKT AFGL L   +       SP  
Sbjct: 30  AVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHNI-------SPGV 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA+QV   L+    K G  V    GG     +   L+ G  +VVGTP
Sbjct: 83  GQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKGVDVVVGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K L +  ++ VV+DEADEML +GF  DI+ IL+++P +R+  +FSAT+ PA
Sbjct: 143 GRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTALFSATLPPA 202

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++++Y  +   V+++        ++ R  L+   D+  A+  +L      +A++FC 
Sbjct: 203 IRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYYLLDERDKLAALCRLLEVEPVASALIFCR 262

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A   +    L+   F   A++G+LSQ+ R   L   R+ + ++ +ATDVAARG+D+ D
Sbjct: 263 TKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVATDVAARGLDIDD 322

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  VI+ +   +PE  +HR GRTGRAGR G+++ ++
Sbjct: 323 ISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLL 358


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 214/382 (56%), Gaps = 8/382 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +F+ + + I  ALS  G+   T VQ  ++   L ++D++V +QTGSGKT A+G+ L  
Sbjct: 1   MTVFKELSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCE 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+  N+     + P AL + PTRELAVQV  ++  +     +      G    H +R +
Sbjct: 61  -LVEWNE-----NKPQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAE 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR+ DHI    L +  L  +V+DEADEML++GF + ++ I+ + PK R
Sbjct: 115 LKQRTHMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT    +  L++ Y     ++ I +     + I++  + V  +D+   + ++L 
Sbjct: 175 VTMLFSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIEVKEADKLALLQDVLV 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+FC T+ +V +  + +AE  +    + G L Q+ER   +   R G+ R  IA
Sbjct: 235 VENPDSCIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           TDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ F+ P + +R AE +
Sbjct: 295 TDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAE-I 353

Query: 360 FREANVSVVWEPAPSVEAIRER 381
                 S+    APS EA+  R
Sbjct: 354 EDYIGFSIPRVQAPSEEAVNNR 375


>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
          Length = 529

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 250/508 (49%), Gaps = 34/508 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LS++GY + T +Q   +   L+ +KD++  AQTG+GKT AF L +       +     
Sbjct: 21  KVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLPIIENFETSDHHIQ- 79

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ + PTRELA+QV  E+  L     + V    GG S+  +R+ ++ G  +VVGT
Sbjct: 80  -----AIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQRKLIKTGVDVVVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  +   +RML FSAT+ P
Sbjct: 135 PGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTNDDKRMLFFSATMPP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIV 249
            I  +AK + K+   + + S  R+ +      +   +++RD   A+  I+        I+
Sbjct: 195 EIMKIAKTHMKEYEVLAVKS--RELTTDLTEQIYFEVNERDKFEALCRIIDLTKEFYGII 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAARGID
Sbjct: 253 FCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINILVATDVAARGID 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     + 
Sbjct: 313 INDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKAVKKEIR 371

Query: 369 WEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
            E  P V+ + +    RI+ D   + +D+     KK+   LL   + E I A  L++  +
Sbjct: 372 KESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAENIVASLLKLTYS 431

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +        +S V   D                    G +   +++G K     + L+ 
Sbjct: 432 DVLDESNYNEISPVKMEDT-------------------GKTRLFIAMGRKDGMTPKKLVD 472

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            + + + + +  I    V    +FV V+
Sbjct: 473 FIVKKAKVKQAYIKNAEVYDAFSFVSVA 500


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 210/359 (58%), Gaps = 2/359 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           IG+A+S   Y   T +QE  +   L  KDVL SAQTG+GKT AF L L + +  +   + 
Sbjct: 12  IGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLNLVEKKPKHKH 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               +P  L ++PTRELA Q+ +EL+         +   +GGVS   + + L++  + +V
Sbjct: 72  KRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNKLLKSNVNFLV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D ++ + +N+ H+ A+V+DEAD MLD+GF  DI+ I +S+ + +++LMF+AT+
Sbjct: 132 ATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQDQQVLMFTATL 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248
           +  I  +A+ + KD  R+ +  EN+ + +I   A  VA  + +   +V++L       AI
Sbjct: 192 NKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVDVLNEADLNQAI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+    R +  L     +   L G++SQ+ER+  +   ++   ++ +ATDVAARGI
Sbjct: 252 IFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQILVATDVAARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           D+ D+  VI+ +L    E+ +HR GRTGRA RKG ++ ++    +   +++ + AN+ +
Sbjct: 312 DVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQKIEKYANIKI 370


>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
 gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
          Length = 633

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 166/557 (29%), Positives = 267/557 (47%), Gaps = 42/557 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 22  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 74

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  +VVG
Sbjct: 75  VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+  +  +FSAT+ 
Sbjct: 135 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+V  L       AI+F
Sbjct: 195 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++   
Sbjct: 314 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 373

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI- 423
             P+ E + +R   +          ++  + +    LLAK  PE+      +AA  L++ 
Sbjct: 374 ELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELDIETLAAALLKMA 431

Query: 424 --HRAGLCAPEEITPV-------------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              R  +   +   P                  G    RD  R  +     R +      
Sbjct: 432 QGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRR----ERRDVGDMQL 487

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG     E R ++  +     I+ + IG I++    + +E+      D +    RT
Sbjct: 488 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTRT 547

Query: 525 VKLDKGIQLKYLGGEKP 541
             L+K + ++ LG  +P
Sbjct: 548 RILNKPMNMQLLGDAQP 564


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 195/335 (58%), Gaps = 6/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   GY + T+VQ  ++   L+++DV+V ++TGSGKT AFG+ L      E ++  
Sbjct: 15  ITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCELTEWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  +L  +     +  A   G  S  R++ +L+   HIVVG
Sbjct: 73  ----PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI      +  LK +V+DEAD+ML++GF D +  I+   P++R  ++FSAT  
Sbjct: 129 TPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L+  Y KD +++ + +     +DI+++ ++V  +D  + +V+++      + IVF
Sbjct: 189 EDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLIIVDENDPFSLLVDLIIVENPDSCIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+   + LA   +    + G + Q++R   +   R G  R  IATDVAARGID+
Sbjct: 249 CRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  VI+ EL  + E+ +HR+GRTGRAG +G ++
Sbjct: 309 ENITHVINYELPLDQESYVHRTGRTGRAGSRGKAI 343


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/345 (38%), Positives = 199/345 (57%), Gaps = 5/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+ +  A+++ GY   T +Q   +   +   DV+  AQTG+GKT  F L L   L    
Sbjct: 9   IPE-LQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLLHRLARHA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           N   SPA     AL +APTRELA+QV   ++  Y+K   + A CI GGV ++ + ++L+ 
Sbjct: 68  NTSTSPARHQTRALILAPTRELAMQVYESVKT-YSKHLPLRATCIYGGVDMNPQIQELRR 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL DH++ K +N++ ++ +VLDEAD MLD+GF  DI+ IL   P  R+ L
Sbjct: 127 GIEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLPASRQSL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA    K+   + +A  N     I +R   V+   + N + ++LR+  
Sbjct: 187 LFSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAHLLRHQP 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF  T+    R    L  H     ++ G+ SQQ+R+  L+  + G+ RV +ATDV
Sbjct: 247 DTQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ +L  VI+ EL    E+ +HR GRTGRAG +G +V ++
Sbjct: 307 AARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLV 351


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 211/382 (55%), Gaps = 20/382 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  ++ E ++  
Sbjct: 10  IKRAINELGYKEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     +  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATLP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ + + + +ASE  + + I +  V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    N+++  +
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNITIEKK 356

Query: 371 PAPSV-------EAIRERDAQR 385
             P++       EA R++  +R
Sbjct: 357 RKPTIIEVKANEEAFRKKQQKR 378


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 216/366 (59%), Gaps = 20/366 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  A+  +G+   T +Q  ++   L +K +++  A+TGSGKT AF + L   L+ 
Sbjct: 7   NLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPLIE-LVN 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           EN+         A+ + PTRELA+QV  E+E L     + +A   GG +++ + + L+N 
Sbjct: 66  ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 118

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF +D+E IL++  + +R+L+
Sbjct: 119 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKRILL 178

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           FSAT+   I  LAK Y  D   +    + + +++I+   + V  ++R   +  IL+   +
Sbjct: 179 FSATMPREILNLAKKYMGDYSFI----KAKINANIEQSYIEVNENERFEVLCRILKNKDF 234

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VFC T+        +L +  F+  A+ G+L+Q +R   +++ +  R ++ IAT
Sbjct: 235 YG----LVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKILIAT 290

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KG ++ +I +   ++ + + R
Sbjct: 291 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKYIER 350

Query: 362 EANVSV 367
              + +
Sbjct: 351 MTKLKI 356


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +   N       
Sbjct: 15  AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL IAPTRELAVQ   EL     + GV V    GG S+ ++ + L++GAHIVVGTPG
Sbjct: 69  AIQALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ R+ L+FSAT+   I
Sbjct: 129 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K+   V IA++   + ++D   + V   ++ + +  ++     + +IVF  T
Sbjct: 189 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +ATDVAARG+D+  +
Sbjct: 249 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 617

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 167/537 (31%), Positives = 268/537 (49%), Gaps = 46/537 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   + +Q   + P L  +DV+  AQTG+GKT AF L L S +        
Sbjct: 18  IQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLLSRVDLG----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              AP  L +APTRELA+QV   ++  YAK   G  V    GG ++  + + LQ G  +V
Sbjct: 73  -LRAPQLLVLAPTRELAIQVAEAMQS-YAKFLPGFHVLPIYGGQAMTLQLKQLQRGVQVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R K L + HL+AVVLDEADEML +GF D +E IL  +P+ R++ +FSAT
Sbjct: 131 VGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQVALFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  +AK Y ++ + + I S     + I  R   V+ + + +A+  IL    +   +
Sbjct: 191 MPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRILEVEESNAWL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+ +     + L    +   AL+G+LSQ  R   ++ ++ G   + +ATDVAARG+
Sbjct: 251 VFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIVVATDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  VI+ ++ ++ E  +HR GRTGRAGR G ++  +    +     + R    ++ 
Sbjct: 311 DVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHAIERATGQTIT 370

Query: 369 WEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               PS+E + +R   +           QD    +++  D ++  DV L      +IAA 
Sbjct: 371 AMHLPSIEDVADRRMSQFKDQLTEVLNSQDLAVFETLIADYQRESDVGLG-----EIAAA 425

Query: 420 FLRIHR---------AGLCAPEEITPVSLVSGRD----RFRDDSRAFKV-------GGGS 459
              + +         A +  P         +GR     R  DD R  +        GGG 
Sbjct: 426 LAYMVQKERPLIPVEAEVSRPMRSDSAGSGAGRPPSSRRRADDERGARPPRAAAASGGGD 485

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               +    F L VG    A+ + ++  +   +GI  ++I  +++  + T VE+ AD
Sbjct: 486 DVPMR---RFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQINAEHTTVELPAD 539


>gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 469

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 24/360 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +        DR +P   
Sbjct: 29  LQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMV-------DRLNPRWF 81

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL + PTRELA QV  E+  L  A+  + V    GGV    +   L+NGAHIVVGTP
Sbjct: 82  AVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGAHIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R+ L+FSAT    
Sbjct: 142 GRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDRQTLLFSATYPEG 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I +LA  + +D   V +A+   QHS   I+ R   V   ++   +  +L +   +++I F
Sbjct: 202 IASLASRFMRDPQTVKVAT---QHSAGKIEQRWYEVGAREKVATVARLLAHFRPESSIAF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+
Sbjct: 259 CNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGLDI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNMQRRAERLF 360
            DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++           + +Q RA + F
Sbjct: 319 ADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGRASQFF 378


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/470 (30%), Positives = 245/470 (52%), Gaps = 28/470 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    ++I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDARVSEAIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                     P+E TP    + +    + +R+FK  G  +D +  ++  S
Sbjct: 439 NQQEIDAIQNPKEKTPKP-SNKKTHQHEQARSFK-KGQHKDRYPKTNHHS 486


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 179/583 (30%), Positives = 284/583 (48%), Gaps = 40/583 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+  +GY   T +Q   +   +  +DV+  AQTG+GKT AF L   S L AE  R +  
Sbjct: 26  QAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSDL-AEAGRAN-- 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P AL + PTRELA+QV  E    YA       V    GG +   +   L+ GA +VVG
Sbjct: 83  DGPFALVLTPTRELAIQVA-EAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKRGAQVVVG 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH++   L +  L+ ++LDEADEML +GF +DIE I   S   R++ +FSAT+ 
Sbjct: 142 TPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQVALFSATMP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  L   Y  +   V +AS+++  S+I  R  +V  S + +A+  IL     +  I+F
Sbjct: 202 TSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRYHMVQHSHKLDALTRILEVEEYEGIIMF 261

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    F+  A++G++ QQ R   + M+R+G+  + +ATDVAARG+D+
Sbjct: 262 VRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAARGLDV 321

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    QR    + R     V   
Sbjct: 322 ERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSIERATKQKVEQL 381

Query: 371 PAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIAAGF--LRIH 424
             PSVE +     ++    + D L    +      +    L+++ P   IAA    L + 
Sbjct: 382 KMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATDIAAALASLVLE 441

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDS--RAFKVG--GGSRDNFKGSSWFSLSVGSKQKAE 480
              L A     P     GRDR   DS  R  K G    SR   +  + + L++G  ++ +
Sbjct: 442 SNTLKADPMPEPSRGKPGRDR---DSGGRDGKPGRERSSRPRDENMTTYRLAIGRNERLQ 498

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY----L 536
              ++  +    G+  + IG I ++ + T V++  D          LD  +  K     +
Sbjct: 499 PGAVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKD----------LDSSVMRKLSNTQI 548

Query: 537 GGEKPDFR---GYKSSGFKSKN--SQDGATKRFK--RFKGASK 572
            G   D R   G  +  FK +N   Q G ++ F+  R  GA K
Sbjct: 549 QGRPIDIRPDSGRPARPFKKRNFDKQPGDSRNFRNDRRGGAKK 591


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/380 (37%), Positives = 208/380 (54%), Gaps = 15/380 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL + GY   + +Q   +   L  +DVL  AQTG+GKT AF L L S L L++       
Sbjct: 23  ALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLLSRLDLSQ------- 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P  L + PTRELA+QV    +   A+ TG  V    GG     + + L +G H+VVGT
Sbjct: 76  AVPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQRLAHGTHVVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L +  L  +VLDEADEML +GF DD+E+ILD  P  R++ +FSAT+ P
Sbjct: 136 PGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPSTRQIALFSATLPP 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +AK +  +   ++I         I  R  LV  + + +A+  IL        IVF 
Sbjct: 196 VIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTHKLDALTRILEAEPFDGMIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR +     + L    +   ALSG++SQ+ R + +Q ++ G+  + +ATDVAARG+D+ 
Sbjct: 256 RTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLDILVATDVAARGLDVE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVV 368
            +  VI+ ++ ++ E  +HR GRTGRAGR G ++ FV P  Q M R  E+  R+    + 
Sbjct: 316 RISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRMLRMIEKATRQ---KIT 372

Query: 369 WEPAPSVEAIRERDAQRILQ 388
               PS EAI ++   R  Q
Sbjct: 373 AMSPPSTEAINDQRIARFQQ 392


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 19/388 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS+ GY + + +Q A +   L  KDV+  AQTG+GKT AF + + S L  + DR    
Sbjct: 28  KALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILSRL--DVDR---- 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV        A   G+ V    GG +   +   L+ GA I+VGT
Sbjct: 82  KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLSGLRRGAQIIVGT 141

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S+L+ +VLDEADEML +GF+DD+E IL  +P+ +++ +FSAT+ P
Sbjct: 142 PGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEYKQVALFSATMPP 201

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  ++K Y  D V + + ++    S+I  R V VA   + +A+  IL     +  I+F 
Sbjct: 202 AIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRILEVESFEAMIIFV 261

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    F   A++G++ Q +R   +  ++ G   + +ATDVAARG+D+ 
Sbjct: 262 RTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 321

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G + +FV P  +++ +  ER  R+    + 
Sbjct: 322 RISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSIERTTRQPLTEIQ 381

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI 396
               P+VE +   +AQR+ +   F DSI
Sbjct: 382 L---PTVEDV---NAQRVSK---FGDSI 400


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 193/348 (55%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +QE  +   L EKDV+  AQTG+GKT AFGL +   L  +
Sbjct: 2   NLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDKQ 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L+   
Sbjct: 62  HDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K + L+F
Sbjct: 116 AILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++      
Sbjct: 176 SATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +ATDVAA
Sbjct: 236 LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +
Sbjct: 296 RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 343


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 218/418 (52%), Gaps = 21/418 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           AL  +G+   T +QE  +   L+   D++  AQTG+GKT AFGL +  T +    R    
Sbjct: 16  ALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLPIIETAVENAKRVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA+QV  E+  L  K  + V    GG ++H + + L++G  +VVGTP
Sbjct: 74  ----ALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQLKALKSGVDVVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++   L++  L   VLDEADEM ++GF DD+  IL S+   RR L+FSAT+   
Sbjct: 130 GRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSANTDRRTLLFSATMPHE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHGAKNAIV 249
           +  +AK +  D   + + +E    +DI     +   VA SDR  A+  ++        +V
Sbjct: 190 VMRIAKEFMGDYELITVKAEK---NDIPLTKQVFHEVADSDRFEALCRVVDAEPDFYGLV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TRA   R    L E  +    + G+LSQ  R   L   +     + +ATDVAARGID
Sbjct: 247 FTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTILVATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +PDL  V++  L  +P+  +HR+GRTGRAG++G+++ +I  +  RR   + + + + +  
Sbjct: 307 VPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLMFITKSSGIDITK 366

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422
              P +  +      R++     LD I  +E       M   LL   +PE + A  L+
Sbjct: 367 AKLPCIHDVIYSKKSRMVDG---LDGIIQEEAHTPYLPMARDLLEGREPEDVVAALLK 421


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 3/369 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   + +Q A + P +  +D+L  A TG+GKT AF L +   L           
Sbjct: 48  ALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQRLADGRVSRDRGP 107

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  + +APTRELA+QVG  +    A+ G  VA   GG  +  +   L+ G  +VV TPG
Sbjct: 108 KPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQLRRGVDVVVATPG 167

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D I    L++  ++  VLDEADEMLD+GF +DIE IL S+P+ R+ ++FSAT+   I
Sbjct: 168 RAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGRQTVLFSATMPGRI 227

Query: 194 TTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +LA+ +  D   + I   A+   +   +   A  V  S    A+  +L       AIVF
Sbjct: 228 QSLARTHLSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALGRVLEMEQPTAAIVF 287

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TRA V   T+ L     +  AL G + Q+ R+  ++ +R GR  + +ATDVAARG+D+
Sbjct: 288 CRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTELLVATDVAARGLDI 347

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ ++ S+PE+ +HR GR GRAGR+G+++ ++     R    + R    SV   
Sbjct: 348 DSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRHLRNIERLIGGSVPSA 407

Query: 371 PAPSVEAIR 379
           P PS   +R
Sbjct: 408 PVPSPADLR 416


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 210/373 (56%), Gaps = 13/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E G+   + +QE  +   L  KDV+  AQTG+GKT AFGL + S +  +         
Sbjct: 16  LEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPILSKIKKDEK------- 68

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL I PTRELA+QV  E+       GV  A   GG S +R+ + ++N +  ++ TPGR
Sbjct: 69  --ALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKHIEN-SQFIIATPGR 125

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D ++   ++I+  K V+LDEADEMLD+GF DDI+ I    P  R+ L+FSAT+   I 
Sbjct: 126 LLDLLKSGKIDIAP-KYVILDEADEMLDMGFLDDIKEIFKFVPSNRQTLLFSATMPEPIK 184

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LAK   K+   + I  +   + +I     ++   +R +A++ ++ Y     +IVFC T+
Sbjct: 185 NLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRLIDYKNPTKSIVFCRTK 244

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L+   F    L G++ Q++R   ++  +  R  + +ATDVAARG+D+ ++ 
Sbjct: 245 KDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVATDVAARGLDVNNVS 304

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            V +  L  +PE+ +HR GRTGRAG++GM++ ++  +  R   R+ + +   ++ +  P+
Sbjct: 305 HVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRIQKISK--IILKEIPT 362

Query: 375 VEAIRERDAQRIL 387
           +  +++++ Q+I+
Sbjct: 363 LADVKDKEIQKII 375


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNRNLVQ------ALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 137/372 (36%), Positives = 202/372 (54%), Gaps = 5/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL   GY   T VQ A + P L  KDVL  A TG+GKT AF L L  T +AE  R +
Sbjct: 25  IAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLL-TRIAEKGRRA 83

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P  L + PTRELA+QV   +       G+      GG S+  + R L+ G  +V+ 
Sbjct: 84  -GNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRRGVDVVIA 142

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  DHI+   L    L AVVLDEADEMLD+GF +++E ILD++P+ ++  +FSAT+ 
Sbjct: 143 TPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTALFSATLP 202

Query: 191 PAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           P I  +A+ + +  V V +  E     + + +   A +V+ + +  A+  +L      +A
Sbjct: 203 PRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAHKMPALARVLDIEQPTSA 262

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC TR  V   ++ L     +  AL G LSQ +R   +Q  R  +  + IATDVAARG
Sbjct: 263 IVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIATDVAARG 322

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  V++ ++  + E  +HR GRTGRAGR+G++V        R    + R+    +
Sbjct: 323 LDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLRNIERQTGQKI 382

Query: 368 VWEPAPSVEAIR 379
                P+V  +R
Sbjct: 383 EIAQVPTVADLR 394


>gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
          Length = 630

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 271/558 (48%), Gaps = 44/558 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 19  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  +VVG
Sbjct: 72  VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+  +  +FSAT+ 
Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+V  L       AI+F
Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALVRFLEAEDFDAAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 251 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVW 369
             + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++  
Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPE 369

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423
              P+ E + +R   +          ++  + +    LLAK  PE+      +AA  L++
Sbjct: 370 VELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELDIETLAAALLKM 427

Query: 424 ---HRAGLCAPEEITPV-------------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               R  +   +   P                  G    RD  R  +     R +     
Sbjct: 428 AQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRR----ERRDVGDMQ 483

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG     E R ++  +     I+ + IG I++    + +E+      D +    R
Sbjct: 484 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDVLQHFTR 543

Query: 524 TVKLDKGIQLKYLGGEKP 541
           T  L+K + ++ LG  +P
Sbjct: 544 TRILNKPMNMQLLGDAQP 561


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D + + +ASE           V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDDPMVIEMASEKTN----PIFHVEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 202/359 (56%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 120 LESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 176

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A+  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 177 ---LVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPG 233

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D IE I+  +P++R+ L+FSAT    I
Sbjct: 234 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERRQTLLFSATYPVGI 293

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             L+  + ++  +V   +    HSD  I+ R   ++  +R +A+V +L +    + + FC
Sbjct: 294 KQLSSKFMRNPQQVKAEAF---HSDAQIEQRFYEISPEERMDAVVKVLAHFRPASCVAFC 350

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 351 FTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 410

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG+++ ++  +   RA+ + +     + W+
Sbjct: 411 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIEQLQKSPLSWD 469


>gi|78355388|ref|YP_386837.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217793|gb|ABB37142.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 529

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 210/385 (54%), Gaps = 9/385 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P  I +A +  G+ +L  VQ   +   L+ +D++V ++TGSGKT A+ L L     
Sbjct: 42  FEEVPDTIRQAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLI---- 97

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              DR  P      AL + PTRELA+QV  E E LY + G+ +A   GGV   ++   L+
Sbjct: 98  ---DRIDPHKNECQALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQTDALK 154

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181
            GA +VVGTPGR+ DH+  + L +  L+ ++ DEAD ML +GF  D++ +    P++R  
Sbjct: 155 AGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPDMKEVQRYLPRRRIS 214

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT  P +  LA  +  D   ++++      +   +        ++D  +V I+  
Sbjct: 215 TYLFSATYPPHVVRLAGEFLHDPQMLSLSHSQVHITQTPHVFYECKPMEKDRVLVRIIEI 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +AI+FC+T+++V   T VL    +    LS +LSQ +R   L+ +R+G+ R  +AT
Sbjct: 275 ENPASAIIFCNTKSNVHYVTAVLQGFGYNADELSADLSQAKREQVLKKLRNGQVRFLVAT 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  V+  E   + E+ +HR+GRTGRAG  G  + ++    +    R+ +
Sbjct: 335 DVAARGIDIPDLSHVVLYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAK 394

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386
              + +   P P+ E + +   +R+
Sbjct: 395 HYQIDMQMRPTPTDEDVAKVATERM 419


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 211/371 (56%), Gaps = 17/371 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL E+G    T VQ+  +   +  +DV+  A TG+GKT+AF L +   L  +       
Sbjct: 15  EALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDKRH---- 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL IAPTRELA+Q+  E + L A +  + +    GG  V R+ R L+ GA +++GT
Sbjct: 71  --PQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQLRKLKGGAQLIIGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L++  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++FSAT+  
Sbjct: 129 PGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTMLFSATMPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            I  LA+ Y  + V V + S +        R V+V  +DR    A+V++L       A++
Sbjct: 189 GIRKLARVYMNEPVDVKVKSASSVPVS-QIRQVVVQTTDRGKQQALVDMLNTDRPYLAVI 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   S+  + L E  F+   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D
Sbjct: 248 FCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLD 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----IPQ--NMQRRAERLFRE 362
           +  +  V + ++  + E+ +HR GRTGRAG KG++V +     +P+  N+QR A   F  
Sbjct: 308 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTFTS 367

Query: 363 ANVSVVWEPAP 373
           +       PAP
Sbjct: 368 SEGGGQRRPAP 378


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 210/379 (55%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I +++   GY   + VQ+ ++   L+ KDV+V +QTGSGKT AF + +   + + END
Sbjct: 13  QDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIPICEHMEIEEND 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL + PTRELAVQ+  ++  +     +  +   G   +  ++++L+   HI
Sbjct: 73  -------AQALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKELKQRVHI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGR  DHI+   +N+ ++K ++LDEADEML++GF +++  I+++ P  R+ ++FSA
Sbjct: 126 IVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQNMLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+  AI  L+K Y K+  +V I  E     +I+ +  ++  +++ + + N+L       A
Sbjct: 186 TMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNLLYIENPDTA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ +V   T  +    +    + G + Q ER + +   + G  R  IATDVAARG
Sbjct: 246 IVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLIATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           ID+ ++  VI+ +L    E+ +HR GRTGRAG KG ++ F  P       +R   E    
Sbjct: 306 IDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPN-----EDRFLSEIEDY 360

Query: 367 VVWEPAPSVEAIRERDAQR 385
           +  E  P  E   E+DA +
Sbjct: 361 IQME-IPKCELPTEKDANQ 378


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 199/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  RF     
Sbjct: 22  LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E   +S I  R   V  ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDNSKIRQRFYEVTETERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALKREVEWHP 372


>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
           malayi]
 gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
           [Brugia malayi]
          Length = 462

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 202/358 (56%), Gaps = 10/358 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA     +   T VQ A L    +++D++  A+TGSGKT AF + +   LL   
Sbjct: 31  VTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA Q+G + E L A  G+++AV +GGV    +   L    H
Sbjct: 91  QKL------FALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLALAKRPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG N+  LK +V+DEAD +L++ F  ++E IL   PK+RR  ++
Sbjct: 145 VIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKERRTYLY 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +    D VR+ ++S+ +    +    + +    ++  ++ IL     +
Sbjct: 205 SATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYILNEMAGQ 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFCST AS  +   +L +  F  V L G++SQ +R  +L   +   + V + TDVA+
Sbjct: 265 TAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLVCTDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RG+D+P +++V++ ++ +  ++ +HR GRT RAGR G+++  + Q    + ++ ERL 
Sbjct: 325 RGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQKIERLI 382


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 271/537 (50%), Gaps = 43/537 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS+ GY + + +Q A + P L   DV+  AQTG+GKT AF + + S +          
Sbjct: 24  KALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILSKIDLTQ------ 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +P AL +APTRELA+QV        A   G+ V    GG S   +   L+ GAH+VVGT
Sbjct: 78  KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGT 137

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S L  +VLDEADEML +GF++D+E IL  +P+ +++ +FSAT+  
Sbjct: 138 PGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQVALFSATMPG 197

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  ++K Y  D V + + S+    S+I  R V VA   + +A+  +L        I+F 
Sbjct: 198 AIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEVEDFGAMIIFV 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    F   A++G++ Q +R   +  ++ G   + +ATDVAARG+D+ 
Sbjct: 258 RTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVATDVAARGLDVD 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR G + +FV P  +++ +  E+  R+    + 
Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEKATRQPLAEMQ 377

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSI----QGDE----KKMVDVLLAKHDPE--KIAA 418
               PSV+ +   +AQR+ +   F DSI      D     +KM++    +HD     IAA
Sbjct: 378 L---PSVDDV---NAQRVSK---FGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIAA 428

Query: 419 GFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
                 R G          P             R  DD    +  G         + + +
Sbjct: 429 ALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQEL---ATYRI 485

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524
           +VG + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT
Sbjct: 486 AVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRT 542


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 240/473 (50%), Gaps = 18/473 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q + +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL I+PTRELA+Q   EL  L     V V V  GG  + R+ +
Sbjct: 61  EHVDTDNPNIQ------ALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGRL DHI    + + H++ +VLDEADEML++GF +DIE I+  +P +
Sbjct: 115 SLKHHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  + + +  +   V I ++      +D   V     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   +K L    +    + G+L+Q  R+  ++  ++G   + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G S+ FV P  M+     
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           E+L R   + +  +P  + EA + + A      D L         K+  + LL  HD   
Sbjct: 355 EKLTRVRMLPL--KPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEELLESHDATD 412

Query: 416 IAAGFLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           + A  L      A    P +ITP   +    R    S+     GG+  ++ G+
Sbjct: 413 LVAALLNDMTKEAASEVPVKITPERPLP---RRHHGSKRTDYHGGNHRHYNGN 462


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 239/456 (52%), Gaps = 27/456 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    + I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456
                     P+E TP +  + +   R+ +R+FK G
Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQREQARSFKKG 473


>gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
 gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
          Length = 632

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 216/401 (53%), Gaps = 16/401 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+ E G+VN   VQE ++ P L  +  DV+  AQTG+GKT AFG+
Sbjct: 1   MKTFEELGVSEEIRRAIDELGFVNPMPVQEEVI-PYLLGQGNDVIALAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVS 113
            L         R  P      AL ++PTREL +Q+  +L   +AK   G+ +    GG S
Sbjct: 60  PLLQ-------RTDPTKKETQALILSPTRELCLQIADDLN-AFAKYMDGMHILPVYGGAS 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + R L++G  I+V TPGRL D +      + ++  VVLDEADEML++GF D I  + 
Sbjct: 112 IEAQIRSLRHGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVF 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P+ R  L+FSAT+   I  +AK+Y  D   + + S N    ++++   +V   D+  
Sbjct: 172 EGVPRDRNTLLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNHVYYMVNAKDKYL 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+  I+ Y+     IVFC T+         L +  +   AL G+LSQQ+R   +Q  R  
Sbjct: 232 ALKRIVDYYPNIYGIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKH 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    +
Sbjct: 292 ITQLLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREK 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            +   + +      V +  P+ E I ++   +++ + +  D
Sbjct: 352 HKVRSIEKIIGKEFVDDELPAPEEICKKQLYKMMNNIMKTD 392


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 220/404 (54%), Gaps = 15/404 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+  +T +Q A L   L  KD++  A+TGSGKT AF L L + L   N R+    A
Sbjct: 17  LQQLGFDAMTPIQAASLPVALAGKDLIAQAKTGSGKTAAFALPLLAKL---NPRWF---A 70

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV  E+  L  A+  + V    GGV+   +R  L+NGAHIVVGTPG
Sbjct: 71  VQAMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQRASLENGAHIVVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +  + L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I
Sbjct: 131 RIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCPKERQTLLFSATYPEGI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK + +D  ++ + +    ++ I+ R   V    R +A+ +IL +    + I FC+T
Sbjct: 191 EKLAKQFMQDPQQIKVEAPVADNT-IEQRFFEVDRESRFSAVCSILNHFRPVSTIAFCNT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +     L    F   AL G+L Q+ER   L    +    V +ATDVA+RG+D+ +L
Sbjct: 250 KQQCNELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSVLVATDVASRGLDVKEL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+ +++ +PE  +HR GRTGRAG KG++V +          ++ +  N   VW    
Sbjct: 310 DIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMREMGAVGKIEQYQNTPSVWH--- 366

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVLLAKHDPE 414
            ++ +    + R+L  P+    I G  K+ +   DVL A  + E
Sbjct: 367 KLDELTPTGSGRLL-PPMVTVQIAGGRKEKIRPGDVLGALTNTE 409


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-ADYKTFANELLEKYDATDIAAA 419

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439


>gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 625

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 268/566 (47%), Gaps = 52/566 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNLKPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     ++     GV V    GG     + R L+ GA IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLRALRQGAQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + KD   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  M   LL K  P      E +AA 
Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLTKLQPQEELDVETLAAA 424

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRF--------------------RDDSRAFKVGGGS 459
            L++ +     P  + P  +   R  F                    RD  R  +     
Sbjct: 425 LLKMAQGE--RPLILPPDPVFRPRREFRDRDDSRGDRRRDPRDSRESRDGDRPQR---RE 479

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SA 515
           R +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 480 RRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKP 541
           D +    RT  L+K + ++ LG  +P
Sbjct: 540 DLLSHFTRTRILNKPMNMQLLGDAQP 565


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 161/519 (31%), Positives = 261/519 (50%), Gaps = 35/519 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +     +     
Sbjct: 48  ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 102

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHIVVGTP
Sbjct: 103 -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 161

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++FSAT+ P 
Sbjct: 162 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 221

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + T+   Y ++  +V++A  N     +     +V   ++D A+  +L       +IVF  
Sbjct: 222 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 281

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 282 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 341

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ +     +  
Sbjct: 342 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 401

Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                V A R          E++++ +      + ++Q    + ++V     D   +AA 
Sbjct: 402 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQ----ESLEV-----DAATLAAM 452

Query: 420 FLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-NFKGSSW--FSLSVG 474
            L+    ++ L    E  P+     RD+ R   R      G  D NF    W  + L VG
Sbjct: 453 LLKRQQGKSPLFYVGE-DPMIAAIERDKNRRKERREDRDNGRGDRNFNTQDWDTYQLQVG 511

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +Q  + + ++  L    G+ + SIGAI++    T+V++
Sbjct: 512 REQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 550


>gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 644

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 171/548 (31%), Positives = 275/548 (50%), Gaps = 36/548 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           +K FE   + + I  A+ E G+V+   VQE ++   L  K DV+  AQTG+GKT A+GL 
Sbjct: 18  LKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 77

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           L   +  ++          A+ ++PTREL +Q+  +L+    Y K  + V    GG S+ 
Sbjct: 78  LLQKIDVDSKHTQ------AIILSPTRELCLQIADDLKDFAKYIKN-LHVEPVYGGASIV 130

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++GA I+V TPGRL D +      + H+  VVLDEADEML++GF + I  IL  
Sbjct: 131 TQIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAG 190

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R  L+FSAT+S  I  +AK Y +D   + + S N    ++++   +V   D+  A+
Sbjct: 191 VPDDRNTLLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 250

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    
Sbjct: 251 KRIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVT 310

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 311 QLLVATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSK 370

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDV----- 406
              + +      V    P+ + I  +   + + D   ++ I  DE++    MV++     
Sbjct: 371 VRAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMVEINRHFE 427

Query: 407 LLAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-------DSRAFKVGG 457
            + K D  K  ++  F R       AP EI   SL  G DR  +        +R+ + GG
Sbjct: 428 YVDKDDIIKKIVSLTFGRFLDYYANAP-EIEKPSLKRG-DRGEEKGMRGGRKARSERGGG 485

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
            SR   KG     +++G         +M  + +     RQ +G I +   ++++EV    
Sbjct: 486 RSRTPEKGYRRLFINLGKDDGFYPGEVMQFINQHVK-GRQQVGHIDLLGKISYIEVPEKD 544

Query: 518 VDLLRRTV 525
            + + R++
Sbjct: 545 ANKVMRSL 552


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 157/512 (30%), Positives = 250/512 (48%), Gaps = 31/512 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   + +Q   +   L   DV+  AQTG+GKT+A+   + S +        P 
Sbjct: 17  KAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISLM-----EHGPH 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA+QV  EL  +   T        GG  + R+ R LQ G  IVV TP
Sbjct: 72  QVQ-ALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKGVDIVVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR   ++ SH++  VLDE+DEML++GF DDI+ +LD+ P +R+ L+FSAT+   
Sbjct: 131 GRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLLFSATMPMQ 190

Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  LA+ + K D   + IA      +  +     V   DR   +  IL     ++AI+FC
Sbjct: 191 IRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRILDVDEPESAIIFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + +    + V  + G++ Q +R N L+  RDG     +ATDVAARGID+ 
Sbjct: 251 RTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVATDVAARGIDIE 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++  VI+ EL  + E+ +HR GRTGRA R G++  ++        +++ R  +  +  + 
Sbjct: 311 NISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIERVTHGHIKRKE 370

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIHRAG 427
            P+VE I E   + +L      + ++ ++ +    L ++ D E     +AA  L+I    
Sbjct: 371 IPTVEDIYEVKYKNVLTK--VKEELEKNDFEKFKPLASELDDEYNLVDVAAALLKI---- 424

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
                        S  +    D  + +     R +  G +   L+ G   K   R ++  
Sbjct: 425 -------------SFENELNFDYASSEKAREVRQS-AGETRLFLNAGRMDKVTPRDILRF 470

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           LC +SG  R  IG I +    +F  VS+   D
Sbjct: 471 LCDNSGFTRNEIGHIDIFDKFSFANVSSSAAD 502


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 529

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 137/407 (33%), Positives = 215/407 (52%), Gaps = 14/407 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  + + +AL + GYV LT +Q   +   +   D+   AQTG+GKT+AF L     
Sbjct: 3   FNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPTLHR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL+  +     + P AL +APTREL +Q+  E + L   T + VA  IGG     + + L
Sbjct: 63  LLSAEEE---EALPYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQEQAL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N A I+V TPGRL D ++  GL++ ++K V+LDEAD M D+GF  D+++I      +++
Sbjct: 120 GNKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILR 240
            L+FSAT+S  +  LA  Y  D + V+I  E      ID   + +   ++   +VN +L 
Sbjct: 180 SLLFSATLSYEVVRLASKYLNDPIEVHINPEKVITERIDQSLLHLGREEKLPYLVNSLLN 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      I+F + + ++ +    L         LS EL Q++R   L+  + G+ +  IA
Sbjct: 240 YPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKYLIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RGID+ ++++V + +L  + EN +HR GRT RAGRKG S+    +      ER+ 
Sbjct: 300 TDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERIE 359

Query: 361 REANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVD 405
           +  N  +       V  IRE   +  +    P+F D +   EKK  D
Sbjct: 360 KYLNSKI------PVAEIREEYLEFPKGEFTPVFADEVIPGEKKYQD 400


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 190/336 (56%), Gaps = 6/336 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +AL    Y  LT+VQE ++   + EKDV+V AQTGSGKT A+ + L   ++ E 
Sbjct: 17  ISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVIWEE 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  E+  +     V  A   G  S  R++ +L+   H
Sbjct: 77  NK------PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQKNH 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHI    L+ ++++ +V+DEAD+ML++GF D +E I+   P  R  ++FS
Sbjct: 131 IVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTMLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+K +      + I S      +I++  + V   ++ + +  +L      +
Sbjct: 191 ATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEADEKTDVLKKVLITENPDS 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+  V +  K L    + V  L G + Q++R + +   ++G  R  +AT VA R
Sbjct: 251 CIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVATGVAGR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GID+ D++LVI+ ++ +  EN +HR GRTGRAG+KG
Sbjct: 311 GIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKG 346


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   + +   
Sbjct: 7   NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  R+ L+F
Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++     +
Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
 gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
          Length = 492

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 244/470 (51%), Gaps = 28/470 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFMR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    + I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETTKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                     P+E TP +  + +    + +R+FK  G  RD    +++ S
Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQARSFK-KGQHRDRHPKTNYHS 486


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 158/507 (31%), Positives = 256/507 (50%), Gaps = 35/507 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY + + +Q   + P L  +D+L  AQTG+GKT AF L L S L          
Sbjct: 20  QAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQLDLSQ------ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + P  L +APTRELA+QV   ++  YA+   G  +A   GG ++  + R L+ G H+VVG
Sbjct: 74  AHPQILVLAPTRELAIQVAEAMQT-YARHLPGFHIATLYGGQNISTQLRQLRRGVHVVVG 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    L + +L  VVLDEADEML +GF +D+E ILD +PK R++ +FSAT+ 
Sbjct: 133 TPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGRQVALFSATMP 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  +A+ +  D V + I S+    S +  R   V    + +A+  IL     +  +VF
Sbjct: 193 SAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRGLSKLDALTRILEVEDFEAMLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L    +    LSG++SQ  R   ++ ++ GR  + +ATDVAARG+D+
Sbjct: 253 VRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVATDVAARGLDV 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ ++  + E  +HR GRTGRAGR+G ++  +    +R    + +     +   
Sbjct: 313 ERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIEQATRQPIQPM 372

Query: 371 PAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEK------IAA--GFL 421
             PS   I +R   RI+Q   +  D+I+  +    + L++ +  E+      IAA   +L
Sbjct: 373 QIPSHADIADR---RIVQFKQVITDTIEDQDLDFFEDLISNYQQEQDLSLREIAASLAYL 429

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFSLSVGSKQ 477
                 L  P+E          D   D   A +    + D  K S      F + VG + 
Sbjct: 430 VQKDKPLVPPKE----------DLSSDPGHAVQTSNWAADLGKPSHQQMQLFRIEVGRQH 479

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRV 504
           + + + ++  +     +  + IG I++
Sbjct: 480 EVKPKNIVGAIANEVNLAPRYIGQIKL 506


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 195/334 (58%), Gaps = 4/334 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S++ +   T +Q   + P L+ +D+L SAQTGSGKT AF L L     A   + SP  
Sbjct: 15  AISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLLQQFEAAVPQ-SPRR 73

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTREL+ QVG E+ +L  +    + V++  GGVS++ +   L+ GA IVV T
Sbjct: 74  L-RALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQMLRLRGGADIVVAT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I    L++S +  +VLDEAD +LDLGF +++  IL   P +R+ L FSAT  P
Sbjct: 133 PGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQRQNLFFSATFPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           A+ TLA+   +D VR+ +A E +   DI+ R + V  + R   + +++  H     +VF 
Sbjct: 193 AVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQLLRHLMAQHHWSRVLVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +       L +         GELSQ +R+  L   +  R +V +ATDVAARG+D+ 
Sbjct: 253 ATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLKVVVATDVAARGLDIA 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L +V++ +L  +  + +HR GRTGRAG KG+++
Sbjct: 313 QLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVAL 346


>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
 gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
          Length = 445

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 206/351 (58%), Gaps = 19/351 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQE-AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           P+++  AL+++  +NL  VQ+ A+  P ++ +D +  A+TG+GKT+AFGL +  T+  E 
Sbjct: 13  PEIV-RALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPILHTITVER 71

Query: 66  ---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
                R  P   P  + +APTRELA QV +EL    +    +  VCI GGVS+  +RR L
Sbjct: 72  REATSRTQPG-CPRCIVMAPTRELAKQVEKELT---STAPHLTLVCIYGGVSIESQRRSL 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    +VVGTPGR+ D ++   L ++ +K +VLDEAD+ML  GF +D+E I++  PK+R+
Sbjct: 128 ERPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMERLPKQRQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IV 236
            +MFSAT+   +  L + + +D + V++  +N +      +      SD +       +V
Sbjct: 188 TMMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGPLLKELV 247

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N   Y      IVF  T+       + ++  +    AL G++ Q +R   L   RDGR  
Sbjct: 248 N--SYGKGGKVIVFAKTKRDTHNVAQAMSRSV-PCEALHGDIPQFQRERTLSGFRDGRFS 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           V +ATDVAARG+D+P+++LVIH E+  + E  +HRSGRTGRAG+KG+++ +
Sbjct: 305 VLVATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILM 355


>gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 420

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/347 (40%), Positives = 198/347 (57%), Gaps = 13/347 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  AL E+ YV  T++Q A +   L+  DVL +AQTGSGKT AF L L    L    
Sbjct: 10  PDLVQSAL-EQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLLQQWLD--- 65

Query: 68  RFSPAS---APLALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             SP +    P AL + PTRELA QVG   R+L     +  + VAV  GGVS++ +   L
Sbjct: 66  --SPRAILRQPRALILLPTRELAAQVGDILRDLAQSLPRK-LKVAVVYGGVSINPQMMAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IVV TPGRL D +    L +S +K +VLDEAD +LDLGF D++  +LD  P  R+
Sbjct: 123 RGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPPARQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT  PA+  LA+   K  +R++I        DI  RA+ V    R   + ++L  
Sbjct: 183 NLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDAGKRTLLLRHLLAT 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF ++R +  R    L  +     AL G+ SQ +R  AL  ++ GR RV +AT
Sbjct: 243 RDWDKALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLRVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+  L LV++ +L  +P +  HR GRTGRAG +G ++  +
Sbjct: 303 DVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFV 349


>gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786]
          Length = 465

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 15/396 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ++ GYV++T +Q A L   L   D++  A+TGSGKT AF L L + L A   RF      
Sbjct: 24  TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDAR--RFDVQ--- 78

Query: 76  LALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAHIVVGTPGR
Sbjct: 79  -AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I 
Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ + ++   V +  E  + S I  R   V   +R +A+  +L ++   + + FC+T+
Sbjct: 198 KLSQQFLRNPKEVKL-EERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                   VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE
Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   
Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
           +EA  E DA   L  P+    I G  K+ +   DVL
Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIRPGDVL 408


>gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147]
          Length = 465

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 213/396 (53%), Gaps = 15/396 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ++ GYV++T +Q A L   L   D++  A+TGSGKT AF L L + L A   RF      
Sbjct: 24  TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLDAR--RFDVQ--- 78

Query: 76  LALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAHIVVGTPGR
Sbjct: 79  -AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I 
Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ + ++   V +  E  + S I  R   V   +R +A+  +L ++   + + FC+T+
Sbjct: 198 KLSQQFLRNPKEVKL-EERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                   VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE
Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   
Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
           +EA  E DA   L  P+    I G  K+ +   DVL
Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIRPGDVL 408


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 209/363 (57%), Gaps = 11/363 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ ++GYV  T VQ   +   +  KDV+  A TG+GKT AFG+ +   +  E+D   
Sbjct: 23  VMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMVEHIDPESD--- 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              A  AL +APTRELA+Q+  EL  L      V +VC+ GG  + ++   L+    IVV
Sbjct: 80  ---AVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKHPQIVV 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ + + +  ++ VVLDEAD MLD+GF  D+  ILD    ++ + +FSATI
Sbjct: 137 ATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLFSATI 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           S  +  ++  YQ+D V + +  +     DI  YR  L    D+   +V +L + G + AI
Sbjct: 197 SREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGYERAI 256

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            FC+T+    R + +L        A+ G++ Q+ R   LQ  R+G+ RV +ATDVAARG+
Sbjct: 257 AFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVAARGL 316

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR--EANV 365
           D+ D+++V + ++    E  +HR GRTGRA R G++   V+    Q + E++ +  +A++
Sbjct: 317 DIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAKNTKADI 376

Query: 366 SVV 368
           +V+
Sbjct: 377 TVL 379


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 195/349 (55%), Gaps = 16/349 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 25  PKVLA-AVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLTLLEKGRA 83

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQN 123
           R   A  P  L + PTRELA QV    E  + K GV     VA+ IGGVS   + R L+ 
Sbjct: 84  R---ARMPRTLILEPTRELAAQV----EENFTKYGVNHRLNVALLIGGVSFDEQERKLER 136

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L
Sbjct: 137 GADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTL 196

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRY 241
            FSAT+ P IT L + +     RV +A  +     +  R V  +  D D   V  +++R 
Sbjct: 197 FFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLRDLVRA 256

Query: 242 HG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            G   KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   ++G+ ++ +
Sbjct: 257 EGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGKLQLLV 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 317 ASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIV 365


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 207/347 (59%), Gaps = 20/347 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  A+  +G+   T +Q  ++   L  E +++  A+TGSGKT +F + L   L+ 
Sbjct: 12  NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVN 70

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           EN+         A+ + PTRELA+QV  E+E L     + +A   GG +++ + + L+N 
Sbjct: 71  ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF  D+E IL++  K +R+L+
Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           FSAT+   I  LAK Y  D   +    + + +++I+   V V  ++R  A+  +L+   +
Sbjct: 184 FSATMPREILNLAKKYMGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEF 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VFC T+        +L +  F+  A+ G+LSQ +R   +++ +  + R+ IAT
Sbjct: 240 YG----LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KG ++ +I
Sbjct: 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 16/377 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+  D++  AQTG+GKT AFG+ L + +    D+       +AL
Sbjct: 2   GFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKI------VAL 55

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  E+  L    G+      GG  + ++ R L+    I++GTPGRL DH
Sbjct: 56  VMCPTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDH 115

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K + +  ++ VVLDEADEMLD+GF DDI+ IL   P++R  ++FSAT+ P I  LA 
Sbjct: 116 INRKTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAH 175

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + ++   V++  +      I    + V    +  A+  +L     + AI+F  T+  V 
Sbjct: 176 QFLRNPQHVSVIPKQVSAPLIAQAYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRVD 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             ++ L +  +    L G+LSQ +R N ++  RDG   V +ATDVAARG+D+  +  VI+
Sbjct: 236 ELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVIN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA--ERLFREANVSVVWEPAPS- 374
            +L  +PE+ +HR GRTGRAG++G +  FV P+ +      E++ R     +  +P PS 
Sbjct: 296 FDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRH---KISRKPLPSL 352

Query: 375 ---VEAIRERDAQRILQ 388
              +E  ++  A+RIL+
Sbjct: 353 AEAMEGKQKMTAERILE 369


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 193/343 (56%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY ++T +Q A L   L+ KDV   A+TGSGKT AFG+ L   +  E         
Sbjct: 20  LNALGYSSMTPIQAATLPAILKGKDVRAQAKTGSGKTAAFGIGLLDKIAVEQ------FV 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA Q+ +EL  L  + +   ++ +C GG S+  +   L +  H VVGTP
Sbjct: 74  TQALILCPTRELADQISKELRRLARFTQNIKILTLC-GGQSIGCQLYSLVHAPHFVVGTP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R   L +++LK +VLDEAD MLD+GF D I+ I+D +PK R+ L+FSAT   +
Sbjct: 133 GRIQEHLRKHTLVLTNLKVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTLLFSATYPDS 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q   + V + S  +  + I+          R   ++ IL+++   + +VFC+
Sbjct: 193 IEQISNRIQHQPLSV-VVSPQKNETAIEQLFYESTNEKRLPLLIKILKHYQPDSCLVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  + L      V+AL G+L Q ER        +   R+ +ATDVAARG+D+  
Sbjct: 252 TKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAARGLDIKQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           L LV++ E++ +PE  +HR GRTGRAG  G +V    PQ M R
Sbjct: 312 LALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQEMHR 354


>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 582

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 8/354 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I +AL+  G V+   +QE  L   L   D++  A+TG+GKT+ FGL     ++  +D 
Sbjct: 32  QDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQRVVGRDDD 91

Query: 68  ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    AP AL + PTRELA+QVG +L          VA   GGV    +   L  G
Sbjct: 92  QWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEPQVEQLTKG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D  +   L ++ +K VVLDEADEMLDLGF   +E I+   P  R+ ++
Sbjct: 152 LEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYLPTDRQTML 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVL--VALSDRDNAIVNILRY 241
           FSAT+   + T+A+ Y    + ++ A  E+   +    R V+  V   D+D  +  ILR 
Sbjct: 212 FSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRA 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           HG    ++F  T+   +R    L    F    L G+L+Q  R  AL+  R+G+  + +AT
Sbjct: 272 HGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVAT 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V FV  +++ R
Sbjct: 332 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIAR 385


>gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
          Length = 528

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 159/511 (31%), Positives = 255/511 (49%), Gaps = 35/511 (6%)

Query: 11  IGE----ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IGE    ALS++GY   T +Q   +   L  EKD++  AQTG+GKT AF L +   +   
Sbjct: 15  IGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALPILENI-EH 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+         + + PTRELA+QV  E+  L +   + +    GG S+  +R+ L+ GA
Sbjct: 74  QDKIQ------GIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQRKLLRTGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ + +RML F
Sbjct: 128 DIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATNEDKRMLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK + KD   + + +        D     V   D+  A+  I+      
Sbjct: 188 SATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCRIIDLAEDF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  + +ATDVAA
Sbjct: 248 YGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ R   
Sbjct: 308 RGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQRIVK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +  E  P V+ + +    +I +  D + L+      KK+   LL K + E I A  L+
Sbjct: 367 TEIRKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAENIVASLLK 426

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +      A E++   S       + + S    VG G    F       +++G K    A+
Sbjct: 427 L------AYEDVLDES------NYNEISSTKTVGSGKARLF-------VALGRKDGMTAK 467

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            L+  + + + +  + I  + V    +F+ V
Sbjct: 468 KLVEKVMKVAKVQDKKIRNVEVYEAFSFITV 498


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 190/341 (55%), Gaps = 13/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ D + + +ASE           V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDDPMVIEMASEKTN----PIFHVEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKANKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
          Length = 496

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 213/383 (55%), Gaps = 13/383 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ EA  +  + + T VQ   +   L+ +DV+  A+TGSGKT AF L +   LL    R 
Sbjct: 72  VLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQRL 131

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  + E L A  G+ VAV +GGV +  +   L    H++V
Sbjct: 132 ------FALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVIV 185

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG ++  LK +V+DEAD +LD+ F  ++  IL   P++R+  +FSAT
Sbjct: 186 ATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSAT 245

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +T L +   +D V+V ++S+ +    +    + +    +D  +V IL     K+ I
Sbjct: 246 MTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSCI 305

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ST A+  R   +L    F  V L G++SQ +R  AL   +     + IATDVA+RG+
Sbjct: 306 VFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRGL 365

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANV 365
           D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G+S+  + Q    + +R E L  +  +
Sbjct: 366 DIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGK-QL 424

Query: 366 SVVWEPAPSVEAIRER--DAQRI 386
            +     P V ++ ER  +A RI
Sbjct: 425 PLFKTEEPEVLSLLERVTEANRI 447


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 203/357 (56%), Gaps = 16/357 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   +    A+  +G+   T +Q+ ++   L  + D++  +QTG+GKT AF L +  
Sbjct: 3   FENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPIIE 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +           A+ +APTRELA+QV  E++ L  +  V V    GG  +  + R 
Sbjct: 63  AIDEKEKSVQ------AIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRA 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+VVGTPGR+ DHIR   L++S +K  +LDEAD MLD+GF DDIE I   +PKK+
Sbjct: 117 LERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKKK 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R+LMFSAT+   I  LA+ Y  D   + ++S+      ++   + V  + + + +  IL 
Sbjct: 177 RVLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFSTLKKILS 236

Query: 241 --YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             ++G    IVFC+T+      ++ L +  +   AL+G++SQ  R       +  R R+ 
Sbjct: 237 DDFYG----IVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           +ATDVAARG+D+ D+  +++  L    E+ +HR GRTGR G+KG +V F++P   +R
Sbjct: 293 VATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKR 349


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 203/357 (56%), Gaps = 10/357 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +  
Sbjct: 37  ILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK-- 94

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVV
Sbjct: 95  ----PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVV 150

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+
Sbjct: 151 GTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATM 210

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L       +IV
Sbjct: 211 PPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIV 270

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D
Sbjct: 271 FVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLD 330

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 331 VPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/346 (37%), Positives = 197/346 (56%), Gaps = 4/346 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P V+ +A++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   N
Sbjct: 21  PSVL-QAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILHRLMQFAN 79

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL + PTRELA QV   +      T +   V  GGV +  +R  L+ G 
Sbjct: 80  TSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQRDALRRGC 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D++ I+   P KR+ L+F
Sbjct: 140 EILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAKRQGLLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  L ++Y  +   + +A+ N     +   A  +A SD+  A+V++++  G  
Sbjct: 200 SATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQIAYPLAGSDKRAAVVHLVKSRGFN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+   SR  + L     +  ++ G+ SQ +R  AL   + G   V +ATDVAA
Sbjct: 260 QVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGELEVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           RG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ F  P+
Sbjct: 320 RGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPE 365


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 199/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F V+AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 234/433 (54%), Gaps = 16/433 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    D     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKD----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  L     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AI+F  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     V    A
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEA 368

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           P+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L++    +
Sbjct: 369 PTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----M 422

Query: 429 CAPEEITPVSLVS 441
               + TP++L S
Sbjct: 423 TKEPDTTPIALTS 435


>gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 604

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 208/374 (55%), Gaps = 23/374 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   I +   +A++E G+     VQE ++   L E  D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
           L   +     R      P AL + PTREL +Q+  +L   Y+K  + V +    GG  + 
Sbjct: 61  LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNS-YSKYLSDVHILPVYGGTPID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G  IVV TPGRL D +R + +++S +  VVLDEADEML++GF +D+E IL  
Sbjct: 114 AQIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R +L+FSAT+   I+ +A +Y KD   + I ++N  +++I +   +V+   +  A+
Sbjct: 174 IPSERHLLLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I  Y+     IVFC TR         L +  +   +L G+LSQ +R   +Q  R    
Sbjct: 234 KRIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-------- 347
           ++ +ATDVAARG+D+ DL  VIH  L  + E+  HRSGRT RAG+ G+S+ +        
Sbjct: 294 QLLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGK 353

Query: 348 ---IPQNMQRRAER 358
              I + MQ++ ER
Sbjct: 354 IKNIERTMQKQIER 367


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score =  220 bits (561), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 10/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V  T +Q A +   L   D L  AQTG+GKT AF L + + +     +     
Sbjct: 46  ALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 100

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 101 -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 159

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K L +  +   VLDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 160 GRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPI 219

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + ++  R+++A ENR  S ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 220 VKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTDASIVFVR 279

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 280 TRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPR 339

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N   M R  ER+ +
Sbjct: 340 ITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTK 391


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 186/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   GY N T +QE  +    + KD+L  AQTG+GKT AF + +   L    ++ +
Sbjct: 29  ILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTA 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+    +    +  +   V  GGV    +R  L+ G  I++ 
Sbjct: 89  QKRI-RTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRKGIDILIA 147

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  D++ ++   PKKR+ L+FSAT+ 
Sbjct: 148 TPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQTLLFSATMP 207

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +  +D  +V +  E+     I      V+ SD+ + + ++L+    ++ +VF
Sbjct: 208 AEIQKLASHILEDPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVF 267

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  K LA+   Q  A+ G  SQ  R NAL   +D + RV +ATD+AARGID+
Sbjct: 268 SRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRVLVATDIAARGIDI 327

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DL  VI+ +L + PE+ +HR GRTGRAG+ G ++
Sbjct: 328 DDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAI 362


>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 580

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 193/354 (54%), Gaps = 8/354 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I +AL+  G V+   +QE  L   L   D++  A+TG+GKT+ FGL     ++  +D 
Sbjct: 32  QDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTIQRVVGRDDD 91

Query: 68  ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    AP AL + PTRELA+QVG +L          VA   GGV    +   L  G
Sbjct: 92  QWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYEPQVEQLTKG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D  +   L ++ +K VVLDEADEMLDLGF   +E I+   P  R+ ++
Sbjct: 152 LEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGYLPTDRQTML 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVL--VALSDRDNAIVNILRY 241
           FSAT+   + T+A+ Y    + ++ A  E+   +    R V+  V   D+D  +  ILR 
Sbjct: 212 FSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKDEMLGRILRA 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           HG    ++F  T+   +R    L    F    L G+L+Q  R  AL+  R+G+  + +AT
Sbjct: 272 HGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRNGKVDILVAT 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V FV  +++ R
Sbjct: 332 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWEDIAR 385


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   + +   
Sbjct: 7   NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  R+ L+F
Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDHRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++     +
Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/525 (29%), Positives = 257/525 (48%), Gaps = 37/525 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L L   +       S  
Sbjct: 64  KTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLERI------NSKE 117

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L + PTRELA+QV    + +      + +    GG     +   L+ G  I+VGT
Sbjct: 118 RNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYSLKRGVEIIVGT 177

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHIR   LN   L+ +VLDEADEML +GF DDIE+IL+  P +R+M++FSAT+ P
Sbjct: 178 PGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNERQMVLFSATMPP 237

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y +D   + I ++ ++   I    + V  S +   +  +L  +  +  I+F 
Sbjct: 238 EIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYGEGVIIFA 297

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A   +  + L      V  L+G++ Q  R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 298 RTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVAARGLDVE 357

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ ++  + E  +HR GRTGRAGR G ++  I    +     L R    S+    
Sbjct: 358 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLERAVGQSIERME 417

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDPE--------KIAAGF 420
            P+ E+I     Q+I +D L   S +    +E  ++  ++ + + E         +AA  
Sbjct: 418 IPNNESINNHRIQKIKRDLLTTASQKRKDQEETNLIKEVINEIESELEITPKEIALAAIN 477

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS------------RAFKVGGGSRDNFKGSSW 468
           L I  + L      T  S ++  +RFR  +                +G   +D  +    
Sbjct: 478 LSIGESPLLIN---TDESWINQAERFRKSNDRRDNRGRSRRRNDLDIGTTEKDKER---- 530

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           F + VG + + +   ++  +   SG+N + IG I++    + V++
Sbjct: 531 FRVDVGHRDRVKPGNIVGAIANESGLNGRMIGRIQIFESYSLVDL 575


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 190/339 (56%), Gaps = 6/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L L   L +   +   A
Sbjct: 15  QAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDRLQSGRAK---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL IAPTRELA QV    E     T +  A+ IGGVS   + + L  G  +++ TP
Sbjct: 72  RMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P K++ L FSAT+ P 
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           IT L K + +D VR+ +A     +++I    V V  SD   +  A+  ++   G +  IV
Sbjct: 192 ITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAGIETGIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  V    K L  H +    + G+L Q +R   L   R G  ++ +A+DVAARG+D
Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  V + ++  + ++ +HR GRTGRAGR G++  ++
Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLV 350


>gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60]
          Length = 621

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 171/554 (30%), Positives = 272/554 (49%), Gaps = 50/554 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L + +        
Sbjct: 17  IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 69

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  IV
Sbjct: 70  PSLKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQLRALRQGPQIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P + +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + +  +   V I S      DI      V    ++ A+V  L       AI
Sbjct: 190 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
               P+ E +  R     A R+ Q    L+S   D+ +    LLAK  P      E +AA
Sbjct: 370 EVELPNAELLSTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEDEQDMETLAA 423

Query: 419 GFLRI---HRAGLCAPEEIT--------PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             L++    R  +  P+ +               G DR R + R  +VG           
Sbjct: 424 ALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRPRRERR--EVG--------DME 473

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG     E R ++  +     I+ + IG IR+    + +E+      D +    R
Sbjct: 474 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTHFTR 533

Query: 524 TVKLDKGIQLKYLG 537
           T  L+K + ++ +G
Sbjct: 534 TRILNKPMNMQLIG 547


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     N 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMN- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 202/351 (57%), Gaps = 8/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AF L L + L   
Sbjct: 10  NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLAKLNVN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +E+  L  A   V +    GG     +   L  G
Sbjct: 70  RLEVQ------ALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLGFG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI VGTPGR+  H+    L +S LK +VLDEAD MLD+GF ++I  ++  +P++R+ L+
Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +++  Q++ V V++ S + + S I+ +   V    R +A+  +L ++  
Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLH-EGSAIEQKLYEVPAGQRLDALTWLLSHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDVA
Sbjct: 243 ASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R
Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 353


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 137/333 (41%), Positives = 190/333 (57%), Gaps = 12/333 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---AP 75
           GY N T VQ+  +   L   D+LVS+ TGSGKT AF L     LLAE     PA     P
Sbjct: 20  GYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSIQRLLAE-----PAVKSIGP 74

Query: 76  LALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             L + PTRELA+QV  +    Y K       A  +GG     + + L     +VV TPG
Sbjct: 75  RVLVLTPTRELALQV-EKAAMTYGKEMRRFRTACLVGGAPYGLQLKRLSQPVDVVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++ S L+ +VLDEAD MLD+GF DDI+ I    P +R+ L+FSAT+   +
Sbjct: 134 RLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPAERQTLLFSATLDGVV 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252
             LA+   +DA R+ I +   + + I+ R +     D  N +++ +LR      AIVF S
Sbjct: 194 GNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDALLRDVEMVQAIVFAS 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S    + +LAE  F   AL G++ Q +R+ ALQ +R+GR RV +ATDVAARGID+  
Sbjct: 254 TKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRVLVATDVAARGIDVAS 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ +L    E+ +HR GRTGRAGR G++V
Sbjct: 314 ISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAV 346


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + L A +        
Sbjct: 22  LAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ---- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   + +A E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ ++  +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHP 372


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 203/366 (55%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L + + L    
Sbjct: 9   LSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT+ P I  LA  + ++  RV +A      + +  R V     D +   V  +++R  G 
Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLRDLIRAQGE 245

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  ++ +A+DV
Sbjct: 246 LKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIQLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++ +   + ++ + +  
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKFSDAIEKLI 365

Query: 364 NVSVVW 369
             +V W
Sbjct: 366 GQTVEW 371


>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 478

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 196/339 (57%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L + GY  +T +Q A L P L  +D++  A TGSGKT AFGLAL   L     
Sbjct: 27  PEVLAN-LRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERL--NPR 83

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF    A  AL + PTRELA QV  E+  L  A+  + V    GGV +  +   L++GAH
Sbjct: 84  RF----AVQALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEHGAH 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++  L   VLDEAD MLD+GF +DI  +    P  R+ L+FS
Sbjct: 140 VVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+ + KD  R+ + +++ +   I+ R   V   +R +A+  +L +   ++
Sbjct: 200 ATYPDGIERIARQFMKDPQRIAVQAQHAE-GKIEQRWYEVQERERLHAVSQLLNHFRPES 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI FC+T+       +VL    F  +AL G+L Q++R   L    +    V +ATDVAAR
Sbjct: 259 AIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  L+ VI+ +++ +PE  +HR GRTGRA  +G+++
Sbjct: 319 GIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLAL 357


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 263/522 (50%), Gaps = 39/522 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +     +     
Sbjct: 20  ALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L  GAHIVVGTP
Sbjct: 75  -PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + T+   Y ++  +V++A  N     +     +V   ++D A+  +L       +IVF  
Sbjct: 194 VKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ +     +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSQMEEIQL 373

Query: 370 EPAPSVEAIR----------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                V A R          E++++ +      + ++Q    + ++V     D   +AA 
Sbjct: 374 PQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQ----ESLEV-----DAATLAAM 424

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV------GGGSRDNFKGSSW--FSL 471
            L+  + G      +    +++  +R ++  +  +        GG R NF    W  + L
Sbjct: 425 LLK-RQQGKSPLFYVGEDPMIAAIERDKNRRKERREDRDNGRDGGGR-NFNTQDWDTYQL 482

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            VG +Q  + + ++  L    G+ + SIGAI++    T+V++
Sbjct: 483 QVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQL 524


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 189/340 (55%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   +    AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 189/340 (55%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   +    AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346


>gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola
           23]
          Length = 600

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 168/538 (31%), Positives = 263/538 (48%), Gaps = 51/538 (9%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I +A+ E G+V+   VQEA++ P L   E DV+  AQTG+GKT AFG+
Sbjct: 1   MKTFEELGVCEQIRKAIEELGFVHPMPVQEAVI-PYLLGNENDVIALAQTGTGKTAAFGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +     R++ A     L ++PTREL +Q+  +L ++     GV V    GG ++ 
Sbjct: 60  PLLERI-DTTQRYTQA-----LVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G  I+V TPGRL D +      +  +  +VLDEADEML++GF D I  I +S
Sbjct: 114 PQMRALKKGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFES 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                  LMFSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+
Sbjct: 174 LSADHHTLMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ ++    AI+FC T+         L +  +   +L G+L+QQ+R   +Q  R+   
Sbjct: 234 KRIVDFYPRIFAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ ++    + +
Sbjct: 294 QLLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQD------------PL------FLDSIQ 397
              + +      V    PS E I ++   +++              P       + + I 
Sbjct: 354 IRNIEKIIGKEFVKAEIPSAEEICKKQLYKVMDQIVKTDVDDEEIAPFMQDINRYFEYID 413

Query: 398 GDE--KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            DE  KK+V +   K         FL    A      EI PV +   +DR R  S   K+
Sbjct: 414 KDELIKKIVSLEFGK---------FL----AYYADAPEIEPV-VPEKKDR-RQQSDKQKL 458

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               +   KG     +++G +       LM  L R  G  RQ +G I +   +++ EV
Sbjct: 459 QNKPQ---KGYRRLFINLGKRNGFYPGELMQTLNRFVG-GRQEVGHIDLLDSISYFEV 512


>gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 357

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/350 (38%), Positives = 199/350 (56%), Gaps = 22/350 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLV--SAQTGSGKTVAFGLALASTLLAENDRFS 70
           +AL  +G+   T +QE I+ P L  +DV +   AQTG+GKT AFGL +        ++ +
Sbjct: 14  KALKRKGFKKPTKIQEKII-PILLSEDVNIVGQAQTGTGKTAAFGLPII-------EKIN 65

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV  EL+ L  K  + +    GG  +  +   L+ GA+IVVG
Sbjct: 66  DEKEIKALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKLR-GANIVVG 124

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI+ K +N+ +L   VLDEADEML++GF +D+E IL  +   + +L+FSAT+ 
Sbjct: 125 TPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKNILLFSATLP 184

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247
             I  LAK Y +D   + + S     + I+ +   V+ S++ N +  I+    ++G    
Sbjct: 185 REILNLAKKYMRDYKLIKVKSSK---NLIEQKHFKVSNSEKFNLLCKIINEENFYG---- 237

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC TR  V    + L E  +   A  G+LSQ  R   L+  +  +  + ++TDVAARG
Sbjct: 238 LIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINILVSTDVAARG 297

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           ID+  L  VI+  L  NPE  +HR GRTGRAG++G ++ FV P   ++ A
Sbjct: 298 IDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYA 347


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 30  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 85  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 204 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 40  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 94

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 95  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 214 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 334 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387


>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 636

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 294/604 (48%), Gaps = 62/604 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +        
Sbjct: 17  IIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNI-------D 69

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IV
Sbjct: 70  PSLKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLRALRQGPQIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + + K+   V I S      DI      V    ++ A+V  L       AI
Sbjct: 190 MPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++
Sbjct: 310 DVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERIMKLTI 368

Query: 368 VWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIA 417
                P+ E + +R     A ++ Q    L+S   D  K  D LL K  P      E +A
Sbjct: 369 PEVEIPNAELLGQRRLAKFAAKVQQQ---LES--SDLDKYRD-LLTKLQPEDELDMETLA 422

Query: 418 AGFLRI---HRAGLCAPEEITPVSLVS-----------GRDRF--RDD--SRAFKVGGGS 459
           A  L++    R  +  P+ +                  G DRF  R D   R  + G   
Sbjct: 423 AALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPREAREGAPR 482

Query: 460 RDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513
           R+         + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 483 RERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 542

Query: 514 SADGVDLLRRTVKLDKGIQLKYLGG--------EKP-DFRGYKSSG--FKSKNSQDGATK 562
             D +    RT  L+K + ++ +G         E+P   RG +S+G   +S   +DGA +
Sbjct: 543 PGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRSAGGERRSFGGRDGAPR 602

Query: 563 RFKR 566
           R  R
Sbjct: 603 RDDR 606


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 207/387 (53%), Gaps = 35/387 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 44  IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 103

Query: 68  -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
                        R  PA A P  L + PTRELA+QV       GR L        +V A
Sbjct: 104 PRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 157

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 158 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFS 217

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R    
Sbjct: 218 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 277

Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             +S +   + ++LR    K AIVF +T+       + L EH F   AL G++ Q  R+ 
Sbjct: 278 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNR 337

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 338 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 397

Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368
            ++  N     RR ER   R  + SVV
Sbjct: 398 NLVNHNDTFQWRRIERFVDRRIDASVV 424


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 30  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 85  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 204 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 28/520 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T VQ   +   L+  DVL  AQTG+GKT AF L L ST+   N      
Sbjct: 25  DALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLSTIDLSN------ 78

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           ++P  L + PTRELA+QV    + +        V    GG     + R L+ G H+VVGT
Sbjct: 79  ASPQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRRGVHVVVGT 138

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHIR + LN+  LK +VLDEADEML +GF DD+E+IL+ +P  R++ +FSAT+  
Sbjct: 139 PGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVALFSATMPS 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + Y +D   V I S++        R + V+   + +A+  IL        I+F 
Sbjct: 199 EIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLDALTRILEIEHYDGVIIFV 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+      ++ L    +   AL+G++ Q  R   +   +     + IATDVAARG+D+ 
Sbjct: 259 RTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIATDVAARGLDVE 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368
            +  VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+ M   R  ER  R+    + 
Sbjct: 319 RISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIERAIRK---RID 375

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIH 424
               PS E I ++   R  Q     D++   +    +++V+    +HD   + A      
Sbjct: 376 RMELPSTEIINDKRVARYKQQ--ISDTLSTADLHFFRELVESYCFEHDVTALDAAAALAS 433

Query: 425 RAGLCAPEEITPVSLVSGRDRF-------RDDSRAFKVGGGSRDNFK--GSSWFSLSVGS 475
                +P  +T      GR++          D R+FK  G     ++  G   + + VG 
Sbjct: 434 LYQGDSPLLLTKQMKPFGREQKERKGRQDHADGRSFKSKGKKDPLYEALGFERYRIEVGE 493

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           K   +   +   +    G++  ++G I +  D + VE+ A
Sbjct: 494 KHGVKPGNIAGAIINEIGLDGDAVGRITIFDDHSTVELPA 533


>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
 gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 198/349 (56%), Gaps = 2/349 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I  AL+++GY   T++Q A +   L   D+L +AQTG+GKT AF L +L           
Sbjct: 14  ITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLERLRRYATTST 73

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+  L + PTRELA Q+ +          +   V  GG+++ ++  DL+ G  IV
Sbjct: 74  SPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTADLRAGCEIV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GRL DH++ K + +  ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSAT
Sbjct: 134 VATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLLPKQRQTLLFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            SP I  LA+++     +V  A +N   + ++   + +  + + N +  ++        I
Sbjct: 194 FSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAIDTAQKRNLLERLIVDLHINQVI 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ SV +  + L      V  + G+ SQQ R   L   + G  RV +ATDVAARG+
Sbjct: 254 VFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELRVLVATDVAARGL 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+ +L  VI+ E+ +  E+ +HR GRTGRAG +G+++ ++ ++ Q+  E
Sbjct: 314 DIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDEQKMFE 362


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 207/387 (53%), Gaps = 35/387 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 44  IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 103

Query: 68  -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
                        R  PA A P  L + PTRELA+QV       GR L        +V A
Sbjct: 104 PRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 157

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 158 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFS 217

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R    
Sbjct: 218 DDIEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 277

Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             +S +   + ++LR    K AIVF +T+       + L EH F   AL G++ Q  R+ 
Sbjct: 278 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNR 337

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 338 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 397

Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368
            ++  N     RR ER   R  + SVV
Sbjct: 398 NLVNHNDTFQWRRIERFVDRRIDASVV 424


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 206/347 (59%), Gaps = 21/347 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +AL   G+   T++QE ++ P L   E+DV+  AQTG+GKT AFGL +   +  +   
Sbjct: 15  ILKALEAIGFQYPTTIQEKVI-PFLLSSERDVIALAQTGTGKTAAFGLPIIQKVNFD--- 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126
               S P A  + PTREL VQ+ R+  + ++K  + + +    GGVS+  + + LQN  H
Sbjct: 71  ---LSIPQAFILCPTRELCVQITRDF-YRFSKFLSTIKIISLYGGVSIDSQIKSLQNKTH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ D I+ K L++  +K ++LDEADEML++GF++++++I+   PK R+ L+FS
Sbjct: 127 IIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKMLPKNRQSLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           AT+S  +  +A+ Y  D V +     NI S+  +H  I Y  ++  L+ + +A+  I+  
Sbjct: 187 ATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKH--IYY--MVGHLNKKYSALKRIVDI 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+FC T+       + L +  +   AL G+LSQ +R + +   R+   +  +AT
Sbjct: 243 NPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNLQFLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+ ++  VI+  L    +  +HRSGRTGRAG  G+SV +I
Sbjct: 303 DVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCII 349


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +   N       
Sbjct: 3   AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 56

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  +L IAPTRELAVQ   EL     + GV V    GG S+ ++ + L++GAHIVVGTPG
Sbjct: 57  AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ R+ L+FSAT+   I
Sbjct: 117 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K+   V IA++   + ++D   + V   ++ + +  ++     + +IVF  T
Sbjct: 177 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +ATDVAARG+D+  +
Sbjct: 237 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 297 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 336


>gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
 gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
          Length = 625

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 166/538 (30%), Positives = 272/538 (50%), Gaps = 37/538 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I +A+ E+G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVCEEIRKAIEEQGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +       +      A+ ++PTREL +Q+  +L ++      + +A   GG S+ 
Sbjct: 60  PLLQRI------DTTTKETQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            + ++L+ G  I+V TPGRL D + RGK   + +++ +VLDEADEML++GF++ I  IL 
Sbjct: 114 TQIKELKRGVQIIVATPGRLIDLMHRGKA-KLENVRNMVLDEADEMLNMGFQESITEILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A
Sbjct: 173 GVPEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R   
Sbjct: 233 LKRLVDFYPKIYAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHL 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ +L  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + 
Sbjct: 293 TQILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKY 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------- 407
           +   + R  +   +    PS E I ++   + + D L  D    DE+++   +       
Sbjct: 353 KVRNIERVISKEFIDGTLPSAEEICKKQLFKSMDDILKTDV---DEEQIAPYVKDIKRQF 409

Query: 408 --LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDR--FRDDSRAFKVGG---- 457
             + K D  K  +   F R       APE   P +     DR   R+DSR  + G     
Sbjct: 410 EYIDKEDLIKKIVTVTFGRFLDYYKNAPEIEKPTTQNGRADRRGGRNDSRGGRGGERSDR 469

Query: 458 --GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             GSR    G     +++G         +M  + ++    RQ++G I +    +++EV
Sbjct: 470 SRGSRKAEAGFKRLFINLGKDDGFYPGEVMQFINKNVH-GRQAVGHIDLLKKQSYIEV 526


>gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 527

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 253/509 (49%), Gaps = 38/509 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +ALS++GY   T +Q A+  P L   EKD++  AQTG+GKT AF L +        +RF 
Sbjct: 18  KALSKKGYEKPTPIQ-ALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL-------ERFE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G  I+VG
Sbjct: 70  PGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGTDIIVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +  K + + +LK  +LDEADEML++GF +D+E IL+S+  ++RML FSAT+ 
Sbjct: 130 TPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRMLFFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +AK + +D   + + +        D     V   D+  A+  I+        IVF
Sbjct: 190 NEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+     L +  +    L G++SQ  R   L+  +  +  V +ATDVAARGID+
Sbjct: 250 CRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     +  
Sbjct: 310 NDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVKTEIRK 368

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKIAAGFLRIH 424
           E  P V+ + +    R++++   L+ I  +      K++   LL   D   I A  ++  
Sbjct: 369 ERVPGVKDVIQVKKFRLIEE---LNHILAENNFDNFKELSRELLNGEDAVDIVAALIK-- 423

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                              +   D+S   ++   +     G     +++G K     + L
Sbjct: 424 ----------------HSYEDVLDESNYNEINNSAPLEKTGKVRLFVALGRKNDMTPKKL 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + M+   + ++ + +  + V  + +F+ V
Sbjct: 468 VEMVTSKTKVDERKLKNVEVYENFSFLSV 496


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 198/340 (58%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +   N       
Sbjct: 15  AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNN------Q 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  +L IAPTRELAVQ   EL     + GV V    GG S+ ++ + L++GAHIVVGTPG
Sbjct: 69  AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ R+ L+FSAT+   I
Sbjct: 129 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K+   V IA++   + ++D   + V   ++ + +  ++     + +IVF  T
Sbjct: 189 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +ATDVAARG+D+  +
Sbjct: 249 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEM 348


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score =  220 bits (560), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 203/357 (56%), Gaps = 10/357 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L  +  +  
Sbjct: 17  ILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLDQRK-- 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAH++V
Sbjct: 75  ----PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNGAHVIV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D I  + L++  +K  VLDEADEML++GF DD+  I++ SP   + ++FSAT+
Sbjct: 131 GTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQRVLFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P + ++ + + +  V V++A +N     +  +  +V   ++D A+  +L       +IV
Sbjct: 191 PPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D
Sbjct: 251 FVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILVATDVVARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 311 VPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367


>gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 604

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 208/374 (55%), Gaps = 23/374 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   I +   +A++E G+     VQE ++   L E  D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
           L   +     R      P AL + PTREL +Q+  +L   Y+K  + V +    GG  + 
Sbjct: 61  LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNS-YSKYLSDVHILPVYGGTPID 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ G  IVV TPGRL D +R + +++S +  VVLDEADEML++GF +D+E IL  
Sbjct: 114 AQIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILAD 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R +L+FSAT+   I+ +A +Y KD   + I ++N  +++I +   +V+   +  A+
Sbjct: 174 IPSERHLLLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I  Y+     IVFC TR         L +  +   +L G+LSQ +R   +Q  R    
Sbjct: 234 KRIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-------- 347
           ++ +ATDVAARG+D+ DL  VIH  L  + E+  HRSGRT RAG+ G+S+ +        
Sbjct: 294 QLLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGK 353

Query: 348 ---IPQNMQRRAER 358
              I + MQ++ ER
Sbjct: 354 IKNIERTMQKQIER 367


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 180/571 (31%), Positives = 290/571 (50%), Gaps = 44/571 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + + S +    D  S A+
Sbjct: 27  AIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----DTTSTAT 82

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTRELA+QV        A  + + V    GG S   +   L+ GA +VVGTP
Sbjct: 83  Q--ALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLAGLRRGAQVVVGTP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+  + L++S +  +VLDEADEML +GF +D+E IL  +P+ +++ +FSAT+ PA
Sbjct: 141 GRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEYKQVALFSATMPPA 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   Y  D + V   ++     +I  R + VA   + +A+  +L     +  IVF  
Sbjct: 201 IRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVR 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    F   A++G++ Q +R   +  +RDG   + +ATDVAARG+D+  
Sbjct: 261 TKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILVATDVAARGLDVER 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371
           +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  +R   +L  +A    + E 
Sbjct: 321 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPR--ERHLLKLIEKATRQTLTEA 378

Query: 372 A-PSVEAIRERDAQRILQDPLFLDSI------QGDE--KKMVDVLLAKHDPE--KIAAGF 420
             P+VE +   +AQR+ +   F DSI       G E  +++V+    +H+     IAA  
Sbjct: 379 ELPTVEDV---NAQRVAK---FADSITHALSNTGIELFRRLVEDYEREHNVPMADIAAAL 432

Query: 421 LRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
               R G   L AP+            R R      K     R +    S + +SVG + 
Sbjct: 433 ALQSRDGEEFLLAPDP-------PPDQRERHPRNERKERPERRRSGGAFSTYRISVGKRH 485

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQLKYL 536
           K     ++  +    G++R   G I + PD + VE+    V L R T+ KL++      L
Sbjct: 486 KVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELP---VKLPRETLKKLEQTRISGVL 542

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
              +PD    K+  +K++ + DG   R KR 
Sbjct: 543 INLRPDRPADKA--YKARRN-DGGKPRRKRL 570


>gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 622

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 167/537 (31%), Positives = 267/537 (49%), Gaps = 41/537 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+SE G+ +   VQE ++ P L  RE DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVSKDICRAISELGFEHPMPVQEEVI-PYLLSRESDVIALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            +    L   D  +  +  + L+  PTREL +Q+  +L E+     G+ +    GG  + 
Sbjct: 60  PV----LQNTDPSTKITQTVILS--PTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++G  I+V TPGRL D +      + +++ +VLDEADEML++GF + I  I + 
Sbjct: 114 SQIRTLKHGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K    L+FSAT+S  +  +AKNY  +   + + S N     +++   +V+  D+  A+
Sbjct: 174 LSKDHITLLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ +H     I+FC T+         L +  +   AL G+LSQQ+R   +Q  R+   
Sbjct: 234 KRIVDFHPRIFGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATDVAARG+D+ +L  VI+  L  + E+  HRSGRTGRAGRKG S+ +I    + +
Sbjct: 294 QFLVATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDV----- 406
             ++ ++     +    P  E I ++   +++ D +  D    DE      M D+     
Sbjct: 354 VRQIEKQIGKEFIAGELPKAEEICKKQLYKVMNDIMKTDV---DEDMIAPYMEDINRQFE 410

Query: 407 LLAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVS-------GR-DRFRDDSRAFKVG 456
            + K D  K  +A  F +       APE I P    S       G+ DR  D SR     
Sbjct: 411 YIDKEDIIKKMVAVTFGKFLDYYKNAPEIIQPTGKSSEIRSERGGKGDRRNDRSR----- 465

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            G R    G     +++G         +M  L ++   NRQ++G I +    +++EV
Sbjct: 466 -GPRKAEPGYRRLFINLGKADGFYPGEVMQFLNKNMK-NRQAVGHIDLLSKFSYIEV 520


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 196/363 (53%), Gaps = 8/363 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GYV +T VQ   L   L+  DV+  A TGSGKT AFGL L   L   N R+    A
Sbjct: 19  LDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLLHPL---NPRYYGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  E+  L    G + V    GG  +  +   L++GA IVVGTPG
Sbjct: 76  ---LVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEHGAQIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L++  L  +VLDEAD MLD+GF D I  ++  +P +R+ L+FSAT  P I
Sbjct: 133 RVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQTLLFSATYPPGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ +  +   V + + +  +S I+ R   V    R+ A+ + +      + +VFC T
Sbjct: 193 KQLAETFMSNPQHVEVETLH-DNSQIEQRYYEVEPFQREEAVASAIACFRPVSCVVFCVT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       + L+ +L Q+ER   L +  +    V +ATDVAARG+D+ +L
Sbjct: 252 KQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLVATDVAARGLDIDNL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+AELS  P+  +HR GRTGRAG KG+++ ++     RRA  + +     + W P  
Sbjct: 312 DMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAIEQLQGAPLNWHPLN 371

Query: 374 SVE 376
           S++
Sbjct: 372 SLK 374


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 233/440 (52%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L   +  +N+     
Sbjct: 15  KAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIEKVDVKNEAIQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA+QV  EL  + A   V V    GG  + R+ R L+   HI+VGTP
Sbjct: 73  ----GLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKRPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + ++  VVLDEADEML++GF DDIE IL + P+KR+ L+FSAT+   
Sbjct: 129 GRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLLFSATMPEP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   V + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    + G+LSQ +R + L+  ++G   + +ATDVAARG+D+  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P       N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMER--- 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
               +P    EA+     QRI  + L + +++ +     K+  + LL +HD   + A  +
Sbjct: 366 ---MKPPTLDEAL--EGQQRIAVEKL-VATVESENLSFYKRAAEELLEEHDSVSLVAACI 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    L    + TPV L  
Sbjct: 420 KM----LTKEPDTTPVQLTE 435


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L        ++  PA
Sbjct: 16  KAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV-------EKIDPA 68

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 69  SPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKNPHIIVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + + +++ VVLDEADEML++GF +DIE IL + P + + L+FSAT+  
Sbjct: 129 PGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + +    + + +  +L     + +IVF 
Sbjct: 189 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQSPELSIVFG 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 249 RTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDIS 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAGR GM+V F+ P     R + + R         
Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITP-----REKDMLR--------- 354

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++I+G ++  +D L
Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTIDRL 387


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 200/364 (54%), Gaps = 8/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   N
Sbjct: 16  LPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GA
Sbjct: 76  ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + ++   V +A E   ++ I  R   V   +R +A+  +L ++   
Sbjct: 190 SATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLEQAHKR 368

Query: 366 SVVW 369
            V W
Sbjct: 369 DVEW 372


>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 581

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 157/534 (29%), Positives = 272/534 (50%), Gaps = 22/534 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGL 56
           M  FE +   + I + + + G++  T +QE  + P L   ++D +  AQTG+GKT AFGL
Sbjct: 1   MTTFETLGLQEPILKGIQDLGFIAPTPIQEKAI-PVLLGGDRDFVGLAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVH 115
            L   +  +         P  L + PTREL +Q+  +L+      G V  V + GG S+ 
Sbjct: 60  PLLQQIDIKQ------RHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIV 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ RDL+ G HIVV TPGRL D I  K +N ++++ VVLDEADEML++GF++DI  IL +
Sbjct: 114 QQLRDLKRGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSN 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P+++   +FSAT+   +  +A+ Y  D   + + ++N  +++I++   +V   ++  A+
Sbjct: 174 TPEEKTTWLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+     I+F  T+       + L    +   AL G+L+QQ+R   ++  R+   
Sbjct: 234 KRIVDYNPEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVAARGID+ ++  VI+ EL  + EN  HRSGRT RAG+ G+S+ +I      +
Sbjct: 294 QVLVATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHD 412
             ++ R           P   A+ E+    ++     +   +   +  ++ +    A   
Sbjct: 354 IRQIERVIGKKFTKVDVPDGFAVCEKQLFGLVHKVHNVVVNEEQIEPYLERIFEEFASMT 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            E+I   F  +         +  P   V      +++ R+ + G     N K +  F ++
Sbjct: 414 KEEIIKRFASLEFNQFLEYYQDAPDLNV------KEERRSAEGGERRSSNGKFTRLF-IN 466

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +GS        ++  LC +SG+    IG I ++   +F EV  D V+  ++T K
Sbjct: 467 LGSVDDFTRGDMLRYLCDTSGVRGNKIGRIDLKGVYSFFEVENDVVEKFQQTFK 520


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 215/375 (57%), Gaps = 7/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + +A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 112 LPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSRI---- 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D+     +P AL +APTRELA+QV    +      G +  + I GG +   +   L+ GA
Sbjct: 168 DK--SVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGA 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P  +++ +F
Sbjct: 226 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   +++ SE R  ++I  R + VA  ++ +A+  IL     +
Sbjct: 286 SATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVAHRNKMDALTRILEVTEFE 345

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 346 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 405

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 406 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 465

Query: 366 SVVWEPAPSVEAIRE 380
            +V    P+V+ + E
Sbjct: 466 PLVEMELPTVDEVNE 480


>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 627

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 265/544 (48%), Gaps = 27/544 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L   +  E     
Sbjct: 22  ILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIKPE----- 76

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             +AP  L +APTRELAVQVG    ++     GV V    GG     + R L+ G  +VV
Sbjct: 77  -LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQGPQVVV 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+
Sbjct: 136 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  +   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 196 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + IATDVAARG+D
Sbjct: 256 FVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLD 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 316 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 375

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423
              P+ E +  R   +        + ++  +  M   LLAK  P      E +AA  L++
Sbjct: 376 VDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELDIETLAAALLKM 433

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            +     P  ++P S++  R R     R        +     R +      + + VG   
Sbjct: 434 AQGE--RPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEMDLYRIEVGRDD 491

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533
             E R ++  +     I+ + IG I++    + +E+      + +    RT  L+K + +
Sbjct: 492 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPMNM 551

Query: 534 KYLG 537
           +++G
Sbjct: 552 QFVG 555


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ+A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+        VL E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 LPANSSIVPLEAE 381


>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 631

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 271/577 (46%), Gaps = 49/577 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + + A+     
Sbjct: 17  ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I S      DI      V    ++ A++  L       AI+
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDP-------EKIAA 418
              P+ E + +R   R+ Q   F   +Q      +  M   LL+K  P       E +AA
Sbjct: 371 VDLPNAELLGQR---RLAQ---FAGKVQQQLESSDLDMYRALLSKLQPQQEELDIETLAA 424

Query: 419 GFLRI---HRAGLCAPEEITPVSLVSG--------------RDRFRDDSRAF----KVGG 457
             L++    R  +  P+ +                       DR   + RA     +   
Sbjct: 425 ALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGDRNDRAPRGDDRPAR 484

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV---- 513
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 485 RERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 544

Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSG 550
             D +    RT  L+K + ++ +G  +P  R  +  G
Sbjct: 545 PGDLLSHFTRTRILNKPMNMQLMGDAQPHERRERREG 581


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score =  219 bits (559), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 185/335 (55%), Gaps = 6/335 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+     VQ   +   L  +D +V A TG+GKT AF L +   L+          
Sbjct: 26  ALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGLVPYG------H 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA+QV   +  L       V    GG  + R+ R L++   ++VGTPG
Sbjct: 80  GPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRHPVDVIVGTPG 139

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R + L +  ++ V+LDEADEMLD+GF +D+E+IL+  P++R+  +FSATI P I
Sbjct: 140 RIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTALFSATIPPRI 199

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L + Y +  V + I  E      I      VA   +  A+  IL Y    +AI+F  T
Sbjct: 200 RQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRILDYEAPTSAIIFVRT 259

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           ++        L    +   A+ G+LSQ  R  A+Q  R G+  + IATDVAARG+D+P +
Sbjct: 260 KSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIATDVAARGLDIPAV 319

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             VI+ ++ S+PE+ +HR GRTGRAG  G ++ +I
Sbjct: 320 SHVINFDIPSDPESYVHRIGRTGRAGATGTAITLI 354


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             ++P    + L E GY ++T VQ A L   L+ +DV   A+TGSGKT AFG+ L   + 
Sbjct: 7   LNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHI- 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
            ++ RF       AL + PTRELA QVG  L  L  + +   V+ +C GG  +  +R  L
Sbjct: 66  -DSTRFQTQ----ALILCPTRELADQVGNVLRQLARFTRNIKVLTLC-GGQPMSAQRDSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HIVVGTPGR+ DHI  + L +  L  +VLDEAD ML++GF +D+E I++++P  R+
Sbjct: 120 VHPPHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEATPASRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    IT ++  +Q+DA+ V +  E  +   ID +    + +++   ++ +L  
Sbjct: 180 TLLFSATWPDGITAISTRFQRDALSV-VTEEVSELPSIDQQFFEASHNEKLGLLIALLSD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VFC+T+         L       + L G+L Q++R   L    +G  RV +AT
Sbjct: 239 RQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L +V++ +L+ +PE  LHR GRT RAG  G++V ++  +   RA  L  
Sbjct: 299 DVAARGLDIKSLAMVVNYQLAWDPEIHLHRIGRTARAGEHGVAVSLVAADEMARAHALED 358

Query: 362 EANVSVVWEPAPSVE 376
                + W  A +++
Sbjct: 359 FLQQKLPWVSASTLK 373


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 240/456 (52%), Gaps = 40/456 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   Q + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N      SA  AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVNVKN------SAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H+  VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----- 352
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P+ +     
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 353 -----QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKM 403
                +R+ ER+          +P    EA+     QRI  + L L+ ++ +     K+ 
Sbjct: 355 IERTTKRKMERM----------KPPTLDEAL--EGQQRIAIEKL-LNVVETENLSFYKRA 401

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL 439
            + LL +HD   I A  L++    L    + TPV L
Sbjct: 402 AEELLEEHDSVTIVAACLKM----LTREPDTTPVQL 433


>gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
          Length = 492

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 243/470 (51%), Gaps = 28/470 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    + I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETTKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                     P+E TP +  + +    + +R+FK  G  RD    ++  S
Sbjct: 439 NQQEIDAIQNPKEKTPKT-PNKKTHPHEQARSFK-KGQHRDRHPKTNHHS 486


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 194/342 (56%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +  + DR    
Sbjct: 14  KAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQHI-DKADR---- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R L +   IVVGTP
Sbjct: 69  -SIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L + HL  +VLDEADEMLD+GF DDIE I++  P +R+ L+FSAT+  A
Sbjct: 128 GRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLFSATMPAA 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   + K+ V V I ++      ++   V     ++ + +  +        A++F  
Sbjct: 188 IMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +ATDVAARG+D+  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  V + ++  +P++ +HR GRTGRAG KG+SV FV P  ++
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 10/352 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AFGL L + L  +
Sbjct: 9   NLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLANL--D 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
            +R        AL + PTRELA QV  E+  L A+T   V +    GG     +   L  
Sbjct: 67  VNRLEVQ----ALVLCPTRELADQVATEIRRL-ARTLPNVKLVTLCGGTPTAPQSATLSF 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHI VGTPGR+  H+    L +  LK +VLDEAD MLD+GF +DI  ++  +P+ R+ L
Sbjct: 122 GAHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  +++  Q++ V V++ S + + S I+ +   V    R +A+  +L ++ 
Sbjct: 182 LFSATYPEGIAQMSRGVQRNPVEVSVESLH-EDSAIEQKLYEVPAGQRLDALGWLLSHYQ 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDV
Sbjct: 241 PSSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDV 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           AARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R
Sbjct: 301 AARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQR 352


>gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
          Length = 608

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 31/368 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L        
Sbjct: 44  LPPLV-EALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL------- 95

Query: 67  DRFSP-ASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            R +P A AP    AL + PTRELA+QV   +     K G+ V    GG  + ++ R L+
Sbjct: 96  QRITPGAHAPFTASALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLRVLK 155

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGR  DH++ K L +  ++ VVLDEADEMLD+GF +D+E IL S+P+KR+ 
Sbjct: 156 RGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEKRQT 215

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN---------RQHSDIDYRAVLVALSDRDN 233
            +FSAT+ P I ++A+ + ++ VRV IA E          RQ + I  RA  VA   R  
Sbjct: 216 ALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLSR-- 273

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
               +L       AIVFC TR  V   T  L  H ++  A                    
Sbjct: 274 ----VLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSH 329

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARG+D+  L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++    +
Sbjct: 330 SADLLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLV----E 385

Query: 354 RRAERLFR 361
            R  RL R
Sbjct: 386 PREHRLLR 393


>gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 607

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 170/552 (30%), Positives = 278/552 (50%), Gaps = 38/552 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A++E GY N   VQE ++ P L     DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVNEEIRRAIAELGYENPMPVQEEVI-PYLLGVGNDVIALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114
            +         +  P      A+ ++PTREL +Q+  +L ++     G+ V    GG S+
Sbjct: 60  PVLQ-------KVDPTQRTTQAVILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA ++V TPGRL D +      + +++ VVLDEADEML++GF + I+ IL 
Sbjct: 113 ESQIRSLKRGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R  L FSAT+S  I  +A+NY  D   + + S N    ++++   LV   D+ +A
Sbjct: 173 GVPENRNTLFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNHTYYLVQARDKYHA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+     I+FC TR         L +  +   AL G+LSQ +R   +Q  R   
Sbjct: 233 LKRIVDYYPKIYGIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351
            ++ IATDVAARG+D+ DL  VI+  +  + EN +HRSGRTGR G++G S+ +I    + 
Sbjct: 293 TQLLIATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKG 352

Query: 352 MQRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--- 407
             R  ER   ++  V V+ EP       +E   +++      L+ ++ DE ++   L   
Sbjct: 353 KIRNIERTIGKQFEVGVLPEP-------KEICTKQLYHVMDHLEHVEVDETQIAPFLPEV 405

Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
                 L+K D  +  ++  F R  +    APE I P       +  R+ +R+ +   G 
Sbjct: 406 FRKLDWLSKEDLIRRLVSDAFGRFLKYYANAPEIIQPGGKGDTPEARRERNRSERRERGP 465

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGV 518
                G +   +++G +    AR ++ ++ R     +  IG I +  + +F EV   D  
Sbjct: 466 HKADPGYARLFINLGKRDNFYAREIINLINRYVK-GKIQIGRIDLTNNCSFFEVPEEDAP 524

Query: 519 DLLRRTVKLDKG 530
            +L++  ++  G
Sbjct: 525 IVLKKMARVKVG 536


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 192/335 (57%), Gaps = 8/335 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+     +QEA++   L  +DV+  A TGSGKT AF L++   +        
Sbjct: 13  ILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSMLQEI-------Q 65

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +    L +APTRELA+Q+  E++     TG+ VA   GG  +  +   L+ G  IVV 
Sbjct: 66  PKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQLDALERGVEIVVA 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   + +  +  +VLDEAD MLD+GF DDI FILD +P+ R M +FSAT+ 
Sbjct: 126 TPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPEDRVMSLFSATMP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++ Y  +  +  + +++     ID   +++   D+   +++ ++    + AIVF
Sbjct: 186 TEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPTKGQ-AIVF 244

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           CST+       K L +  F  VA+ G++SQ  R  ++   R G+A + +ATDVA+RGID+
Sbjct: 245 CSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASRGIDV 304

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +ELVI+ ++ +      HR GRT RAG KG +V
Sbjct: 305 PRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAV 339


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 143/454 (31%), Positives = 244/454 (53%), Gaps = 20/454 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ + G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 27  QSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLEKVDTNKEMVQ-- 84

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 85  ----GIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKKRPHIIVGTP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 141 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPEP 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 201 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 261 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371
           +  V + ++  +PE+ +HR GRTGRAG+ G++ +FV P+ M  + + + R     +    
Sbjct: 321 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMG-QLKNIERTTKRKMDRMK 379

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L++    
Sbjct: 380 APTLDEALE-GQQRLIAEKL-QSAIENDNLSYYKRIAEEMLEENDSVAVVAAALKM---- 433

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           +    + TP+SL S        S+  K  GG RD
Sbjct: 434 MTKEPDTTPISLTSEPPVISRGSK--KRSGGYRD 465


>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 475

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 187/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+  + Y   T +Q   +   L  +D+L SAQTG+GKT AF L +   L  +
Sbjct: 8   NLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPILDYLGRQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N R  P + P  L + PTRELA+QVG           V  A+  GGV+  R+ RDL  G 
Sbjct: 68  NRRPIP-NEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQVRDLNRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +    +++S L+   +DEAD M+D+GF  D++ I+   P++R+ L F
Sbjct: 127 HILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQERQSLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L++    D V V I  E R    I+   + V    + + +++IL   G  
Sbjct: 187 SATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQSKKDLLLDILNEEGIG 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R  AL   R+ + +V +ATDVAA
Sbjct: 247 QTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ EL   PE+ +HR GRTGRAG  G+++
Sbjct: 307 RGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAI 346


>gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 613

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/398 (34%), Positives = 211/398 (53%), Gaps = 10/398 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+ N   VQE ++   L  K DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           +     A +          A+ ++PTREL +Q+  +L        G+ VA   GG  +  
Sbjct: 61  VVQKTDATD------KTTQAVILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++GA I+V TPGRL D I      +  +  +VLDEADEML++GF + I  I ++ 
Sbjct: 115 QIRTLKHGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P     L+FSAT+S  +  +AKNY  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDHNTLLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RVVDFYPHIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            ++ ++     V    PS E I ++   +++ D +  D
Sbjct: 355 RQIEKQIGKEFVDGTLPSPEEICKKQLYKVMNDIMKTD 392


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
          Length = 492

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 608

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 197/340 (57%), Gaps = 8/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I  A++E G+ N T +QE+ +   L    D +  AQTG+GKT AFGL L    L +N + 
Sbjct: 13  IVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLPLLE--LIDNTK- 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              + P AL + PTREL +Q+  +L+        V V    GG ++  + R+++ G  IV
Sbjct: 70  ---NHPQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVNQLREIKRGVQIV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D I  K ++ S++  VVLDEADEML++GF+DDI  IL ++P  ++  +FSAT
Sbjct: 127 VATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTTPDTKKTWLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +A+NY  +   + +  +N  +++I++   +V   D+  A   I+ ++     I
Sbjct: 187 MPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKARDKYAAFKRIVDFNPDIFGI 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+       + L +  +   +L G+LSQQ+R   ++  R+   ++ IATDVAARGI
Sbjct: 247 VFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQLLIATDVAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ ++  VI+  L    EN  HRSGRT RAG+ G+S+ +I
Sbjct: 307 DVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAII 346


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 208/378 (55%), Gaps = 13/378 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P  + +   L E GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L + 
Sbjct: 3   FSNLPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDVIAQAKTGSGKTAAFGIGLLTK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120
           L  +  R        +L + PTRELA QV +EL  L  A   V +    GG +   +   
Sbjct: 63  LQVKKFRVQ------SLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQLGS 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAHI+VGTPGR+  H++   L++  L+ +VLDEAD MLD+GF ++I  +L  + K++
Sbjct: 117 LSHGAHIIVGTPGRILKHLKKATLSLEDLEMLVLDEADRMLDMGFSEEINEVLSFTKKRK 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT +  I  ++KN Q +AV V   S     ++I  R   V    + + IVNIL 
Sbjct: 177 QTLLFSATYTDEIMDISKNLQHEAVSVKTTS-TETANNITERFYEVNDHQKLDTIVNILS 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +N I+F +T+       + L +     +A+ G+L Q ER++ L    +    V IA
Sbjct: 236 NFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPVLIA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ ++ +VI+ +L    E   HR GRTGRAG+ G++  +     Q  A++ +
Sbjct: 296 TDVAARGLDIKEMSMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFS---QYEADKAY 352

Query: 361 REANVSVVWEPAPSVEAI 378
              N + ++E A  ++ +
Sbjct: 353 EYKNETRLFEDAGELKTV 370


>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
           3043]
          Length = 568

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 169/518 (32%), Positives = 259/518 (50%), Gaps = 26/518 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I   L   GY   + +Q   +   L  +DVL  AQTG+GKT AF L L S L  +
Sbjct: 15  SLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQ 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    P  L +APTRELA QV    +++     G+ V    GG     +   L+ G
Sbjct: 75  R------REPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DH+    L +  L A+VLDEADEML +GF DD++ ++  +PK  + + 
Sbjct: 129 AQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVF 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I+ +  +Y  D +R+ I ++ +    I+ R V +    +  A+  +L     
Sbjct: 189 FSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPV 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  TRA+ +   + L        ALSG+L Q  R   ++ ++ G+  V IATDVA
Sbjct: 249 DAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + +L  + E   HR GRTGRAGR G+++       QRR   + R   
Sbjct: 309 ARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMER--- 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF----LDSI-QGD--EKKMVDVLLAK-HDPEKI 416
             V  +    VE + + DA R  ++ LF    LD++ +G   +++++D L+   +DP  +
Sbjct: 366 --VTGQQMQEVE-LPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGLVDDGYDPVDL 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS-RAFKVGGGSRDNFKGSSWFSLSVGS 475
           A     + R+G  AP    P     G  R R  S R  K     R    G + + +SVG 
Sbjct: 423 ACAMASMARSG-EAPIGRLP---KPGERRSRQSSGRDDKPNRRDRGPSAGMTRYRVSVGH 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           K   +   L+  L    GI+   IG I ++   + VE+
Sbjct: 479 KDGVKPGQLVGALANEGGIDGGKIGRIDIRNAFSVVEL 516


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL E N   
Sbjct: 26  ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+
Sbjct: 86  SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL E N   
Sbjct: 26  ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+
Sbjct: 86  SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 199/354 (56%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++   +S+ L  L I+PTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDTSSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P  
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI ++   + ++   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 40  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 94

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 95  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 334 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 40  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 94

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 95  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 334 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 131/345 (37%), Positives = 200/345 (57%), Gaps = 5/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+++ +A+++ GY   T +Q   +   +  KDV+  AQTG+GKT  F L L   +    
Sbjct: 9   IPELL-QAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHRIARHA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           N   SPA     AL +APTRELA+QV   ++  Y+K   + +VC+ GGV +  ++ +L+ 
Sbjct: 68  NTSTSPARHQTRALILAPTRELAMQVFESVK-TYSKHLPLRSVCVYGGVDIRPQQAELRR 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL DH+  K +N+S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L
Sbjct: 127 GIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLPKQRQSL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA    K+   + +A  N     I +    V+   + N + ++LR+  
Sbjct: 187 LFSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAHLLRHKP 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF  T+    R    L        A+ G+  QQ+R++ L+  + G+ RV +ATDV
Sbjct: 247 DTQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+ +L  VI+ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 307 AARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLV 351


>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
           'morsitans']
          Length = 622

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 164/544 (30%), Positives = 265/544 (48%), Gaps = 27/544 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L   +  E     
Sbjct: 17  ILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNIKPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             +AP  L +APTRELAVQVG    ++     GV V    GG     + R L+ G  +VV
Sbjct: 72  -LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQGPQVVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  +   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423
              P+ E +  R   +        + ++  +  M   LLAK  P      E +AA  L++
Sbjct: 371 VDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELDIETLAAALLKM 428

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            +     P  ++P S++  R R     R        +     R +      + + VG   
Sbjct: 429 AQGE--RPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEMDLYRIEVGRDD 486

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533
             E R ++  +     I+ + IG I++    + +E+      + +    RT  L+K + +
Sbjct: 487 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPMNM 546

Query: 534 KYLG 537
           +++G
Sbjct: 547 QFVG 550


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score =  219 bits (559), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 191/343 (55%), Gaps = 8/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L + G+   T +Q A +   L  +D+L  A+TGSGKT+AF + L    + E   + 
Sbjct: 13  LADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPLIERAVKEG--WK 70

Query: 71  PASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           PA +   P AL +APTRELA+Q+  EL   YA   V      GGV + R  R L+    I
Sbjct: 71  PAGSARSPRALVLAPTRELALQIEMELRK-YAPPSVTSLAVYGGVPIERHYRALRQPPMI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGRL D    + L++  ++ VV+DEAD+MLD GF  DI+ IL   P +R+ ++FSA
Sbjct: 130 VIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLPSQRQTMLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRY-HGAK 245
           T SP I TLA++  K+  R  +       + I +   +V + S R   I  +L+      
Sbjct: 190 TFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSESSRVQLIHTLLQSPESGD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC  +  V R    L      V A++G  SQ +R   L   R GR R  +ATDVAA
Sbjct: 250 QSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRLRTLVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+P +  VIH EL  NP + +HR+GRTGRA R G ++ ++
Sbjct: 310 RGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLIL 352


>gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
          Length = 492

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 149/468 (31%), Positives = 255/468 (54%), Gaps = 29/468 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+ + T +QE I+   ++  D++  AQTG+GKT AFG+ L S +   N      
Sbjct: 15  KAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPLLSKIEKGN------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL +APTRELA+QV +E+  L     V      GG  + ++ R L+    IVV TP
Sbjct: 69  KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQIRGLKKNPQIVVATP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR  DH+R   +N+++++ V+LDEADEML +GF +DIE IL   P +R+ L+FSAT+   
Sbjct: 129 GRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPSERQTLLFSATMPKR 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I ++++ + K    V + ++      I+ R + +   D+ +A+  ++  H  + +I+F  
Sbjct: 189 IQSVSQKFMKSPQTVAVKNKTMTVDTIEQRYLDLKERDKFDALCRLMDIHCPELSIIFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L+   + V  + G++ Q+ R   L+  + G  ++ +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKILVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVS-VVWE 370
           +  V + +L  +PE+ +HR GRTGRAG+KG+S  FV P+  +R    L  +   S ++ +
Sbjct: 309 VSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPR--EREYLELIEDTTKSKMLKQ 366

Query: 371 PAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHR 425
             PS+    +A   + AQ+++   +   +   D ++    LL ++D  K+ +  L+ + +
Sbjct: 367 HVPSIGDAKDARYRQAAQKLIG--IAESAKTHDLEEAAQKLLEEYDAVKLVSAALKMVTK 424

Query: 426 AGLCAPEEITPVSLV--------SGRDRFRDDSRAFKVGGGSRDNFKG 465
               AP  +T  S V        S   R+  DS   K G GS  ++KG
Sbjct: 425 QSSDAPVTLTDESPVRMKKKPMKSSGSRYSKDS---KPGSGS-SSYKG 468


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 204/369 (55%), Gaps = 8/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL L   L  + 
Sbjct: 10  LPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLLQHL--DA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            RF+  S    L + PTRELA QV  EL  L      + V    GGV    +R  L +  
Sbjct: 68  GRFNTQS----LVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGLQRDSLTHAP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++   P   + L+F
Sbjct: 124 HVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQVPTPCQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +++  Q+D + + I + +   + ++ +   V+ S + + +  +L      
Sbjct: 184 SATWPEAIAAISRRIQRDPLIIEIDTVDELPA-VEQQFYEVSRSGKLDLLQKLLSREQPA 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G++ Q++R   L    +G +RV +ATDVAA
Sbjct: 243 SCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA  L     +
Sbjct: 303 RGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLKM 362

Query: 366 SVVWEPAPS 374
            + W P P+
Sbjct: 363 KLNWHPLPT 371


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 145/438 (33%), Positives = 233/438 (53%), Gaps = 30/438 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L   +   N+     
Sbjct: 15  KAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPLIEKVDVTNEAIQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA+QV  EL  + A   V V    GG  + R+ R L+   HI+VGTP
Sbjct: 73  ----GLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKRPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L++ ++  VVLDEADEML++GF DDIE IL + P+KR+ L+FSAT+   
Sbjct: 129 GRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLLFSATMPEP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   V + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    + G+LSQ +R + L+  ++G   + +ATDVAARG+D+  
Sbjct: 249 TKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P       N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTKRKMER--- 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
               +P    EA+     QRI  + L + +++ +     K+  + LL +HD   + A  +
Sbjct: 366 ---MKPPTLDEAL--EGQQRIAVEKL-IATVETENLSFYKRAAEELLEEHDSVSLVAACI 419

Query: 422 RIHRAGLCAPEEITPVSL 439
           ++    L    + TPV L
Sbjct: 420 KM----LTKEPDTTPVQL 433


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 192/332 (57%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE+GY   T +Q   +   ++  D++  AQTG+GKT AF L L   LLAEN + +P  
Sbjct: 33  AISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQLLAENKQ-APGR 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +  AL +APTRELA Q+  +++   A T +   V  GGV    + + L  G  I+V TPG
Sbjct: 92  SCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALARGVDILVATPG 151

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  +   +   + V+LDEAD+MLDLGF   I  +L    ++R+ LMFSAT++PAI
Sbjct: 152 RLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQTLMFSATMAPAI 211

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA ++      V +   ++    ID +      S + +A+++++     K AI+F  T
Sbjct: 212 RQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPDALIDLMAPEAGKRAIIFTRT 271

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  K L ++  +  A+ G+ SQ +R+ AL   + G A V +ATD+AARGID+  +
Sbjct: 272 KYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVATDIAARGIDVDGV 331

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +LV++ EL +  EN +HR GRT RAG  G +V
Sbjct: 332 DLVVNYELPNVAENYVHRIGRTARAGASGRAV 363


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
 gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
          Length = 527

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 154/509 (30%), Positives = 255/509 (50%), Gaps = 38/509 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +ALS++GY   T +Q A+  P L   EKD++  AQTG+GKT AF L +        +RF 
Sbjct: 18  KALSKKGYEKPTPIQ-ALTIPALLDGEKDIIGQAQTGTGKTAAFSLPIL-------ERFE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G  I+VG
Sbjct: 70  PGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGTDIIVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +  K + + +LK  +LDEADEML++GF +D+E IL+S+   +RML FSAT+ 
Sbjct: 130 TPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRMLFFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +AK + +D   + + +        D     V   D+  A+  I+        IVF
Sbjct: 190 NEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDFYGIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+     L +  +    L G++SQ  R   L+  +  +  V +ATDVAARGID+
Sbjct: 250 CRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ +     +  
Sbjct: 310 NDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQKIVKTEIRK 368

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL---LAKHDPEKIAAGFLRIHRA 426
           E  P V+                 D IQ  + ++V+ L   LA+++ +     F  + R 
Sbjct: 369 EKVPGVK-----------------DVIQAKKFRLVEELNHILAENNFD----NFKDLSRE 407

Query: 427 GLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            L   + +  V+  +    +   D+S   ++   +     G     +++G K     + L
Sbjct: 408 LLNGEDAVDIVAALIKHSYEDVLDESNYNEINNSASLEKTGKVRLFVALGRKNDMTPKKL 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + M+   + ++ + +  + V  + +F+ V
Sbjct: 468 VEMVTSKTKVDERKLKNVEVYENFSFLSV 496


>gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
 gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
          Length = 619

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 196/344 (56%), Gaps = 9/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   + VQEA +   L  K++L +AQTG+GKT AF L   S L  +       
Sbjct: 17  KAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFLSKLDEKQ------ 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P  L + PTRELA+QV    +  YAK   G  V    GG  +  + R L+ GA +VVG
Sbjct: 71  KTPQVLVLTPTRELAIQVAEAFQS-YAKHIKGFHVLPIYGGADIGGQLRGLKRGAQVVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R + L++S +K ++LDEADEML +GF DD+E IL  +P + +  +FSAT+ 
Sbjct: 130 TPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQRTLFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PAI  +A  Y  DA  V+I ++ +    I    ++V    + +A+  IL        I+F
Sbjct: 190 PAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILDVEQFDGMIIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T++S     + L    F   AL+G+L+Q  R   +  ++ G+  + +ATDVAARG+D+
Sbjct: 250 VRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLDIVVATDVAARGLDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ ++  + E+ +HR GRTGRAGR+G ++  + Q   R
Sbjct: 310 ERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETR 353


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score =  219 bits (558), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 265/521 (50%), Gaps = 33/521 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L + + +     +     
Sbjct: 20  ALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P   + ++FSAT+ P 
Sbjct: 134 GRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPI 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFC 251
           +  +   + ++  R+++A ENR  S +  +  +V   ++D A++ +L      +A IVF 
Sbjct: 194 VKQIVDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEENIDASIVFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+    +  AL G++ Q  R   +  ++ G   V +ATDV ARG+D+ 
Sbjct: 254 RTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVARGLDIQ 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368
            +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N   M R  ER+ +     + 
Sbjct: 314 RITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVTKSRMEEIQ 373

Query: 369 WEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
                +V A R      E ++Q+          + G  ++ +DV     D   +AA  L+
Sbjct: 374 LPNRDAVAAARLTRLGQELESQKEQATLEAFVELVGKLQETIDV-----DATTLAAMLLQ 428

Query: 423 IHRAGLCAPEEITPVSLVSGRDRF--------RDDSRAFKVGGGSRDNFKGSSW--FSLS 472
             + G        P  +++  DR          DD       GG R +   + W  + L 
Sbjct: 429 -RQQGNRPLFYKGPDPMIAAIDREQQRRERRGNDDRGTRNERGGERRSNNSADWDTYQLQ 487

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG +Q  + + ++  +    G++++ IGAI++ P  TFV++
Sbjct: 488 VGREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQL 528


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S L A   RF     
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V  ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQAQKRDVEWHP 372


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348


>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 562

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 8/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY   T++Q   +   L  +D+L  A TG+GKT AF L +   L  ++D
Sbjct: 19  PELL-DALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILHRL-PDSD 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R      P AL + PTRELA+QV   L          +    GG  + R+ R L+ G  +
Sbjct: 77  R---GDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALERGVDV 133

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR  DHI    L +  ++ VVLDEADEMLD+GF +DIE I++  P+ R+ ++FSA
Sbjct: 134 VVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVLFSA 193

Query: 188 TISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   I  +A+ +  D VRV IA  +    +   +   A +VA   +  A+  +L     
Sbjct: 194 TMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVLDMESP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC TR  V + T+ L    ++  AL G +SQ++R   +  +R G A + IATDVA
Sbjct: 254 TAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLIATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++  + S  E  +HR GR GRAGR+G+++ ++     R  + + R  +
Sbjct: 314 ARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTIQRSTS 373

Query: 365 VSVVWEPAPSVEAIRER 381
             +  E  P+V  +R R
Sbjct: 374 GPISVEKLPTVADLRAR 390


>gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 612

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 172/553 (31%), Positives = 272/553 (49%), Gaps = 63/553 (11%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    I  A+ E G+   T +Q   + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 13  FSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLLSQ 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
           L  E D+      P  L +APTRELA+QV   ++  +A+   G  V    GG ++  + R
Sbjct: 73  L--EVDK----KYPQLLVLAPTRELALQVAEAMQ-SFARHLPGFQVLPLYGGQNMTLQLR 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ GA +VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D +E IL+ +PK+
Sbjct: 126 RLQRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKE 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+  A+  +A  + K+ V + I       + I  +   V    + +A+  +L
Sbjct: 186 RQVALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLHKLDALTRLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+ +     + L    F   AL+G+++QQ R   ++ ++ G   + +
Sbjct: 246 EAEEFEAVLVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIVV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358
           ATDVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G + +FV P     R  R
Sbjct: 306 ATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTP-----RERR 360

Query: 359 LFREANVSVVWEPAP------------SVEAIRERDAQRILQDPL-FLDSIQGDEKKMVD 405
           L      +   + AP             V   +E+ ++ + Q  L F + +  D ++  D
Sbjct: 361 LLAAIEQASGQKIAPISLPSRQDISDRRVSLFKEKISEVMAQQELDFFEELIDDYQQEQD 420

Query: 406 VLLAKHDPEKIAAG--FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----- 458
           V     DP +IAA   +L      L AP E        GR   R+D  A   GG      
Sbjct: 421 V-----DPRRIAAALSWLLQQERPLQAPAE------PEGRASSREDDSALAGGGKKWERE 469

Query: 459 --------SRDNFK-----GSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIR 503
                    RD  +        W  + + VG +   E   ++  +   + ++ + IGAI+
Sbjct: 470 PQRREHSRERDQERQHDRSHDQWRRYRIEVGRQHGVEPGNIVGAITNEANLSSREIGAIK 529

Query: 504 VQPDLTFVEVSAD 516
           +    + V++  D
Sbjct: 530 IYDFFSLVDLPHD 542


>gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
          Length = 492

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 27/456 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    + I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456
                     P+E TP +  + +    + +R+FK G
Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQTRSFKKG 473


>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 438

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 191/362 (52%), Gaps = 7/362 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E+GY   + +QE  +   L  KDVL SAQTG+GKT  F L +   L   ++   P 
Sbjct: 14  KAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQYL---SETKHPK 70

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +        +  AV  GGV    +   L+ G  I+V T
Sbjct: 71  YRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATLKRGVDILVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    K ++   +   +LDEAD MLD+GF  DI  I+   P KR+ LMFSAT S 
Sbjct: 131 PGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQNLMFSATFSK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    K+ V V  A +N     + ++   +    +    + +++ +     ++F 
Sbjct: 191 EIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTEFTIKLIKDNNWNQVLIFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R T+ L +      A+ G  SQ  R+ AL+  +D   +V +ATD+AARG+D+P
Sbjct: 251 RTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVLVATDIAARGLDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
            L  VI+ EL + PE+ +HR GRTGRAG KG ++ ++       Q+  E+L  E   S+V
Sbjct: 311 LLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKEIEKLLNEKLTSIV 370

Query: 369 WE 370
            E
Sbjct: 371 VE 372


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSIQ------AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL+ +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 201/365 (55%), Gaps = 8/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   
Sbjct: 15  SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
           N       A  A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++G
Sbjct: 75  N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+
Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  L++ + ++   V +A E   ++ I  R   V   +R +A+  +L ++  
Sbjct: 189 FSATYPEGIVKLSQQFLRNPKEVKLA-ERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVA
Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   L +   
Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLEQAQK 367

Query: 365 VSVVW 369
             V W
Sbjct: 368 RDVEW 372


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 155/514 (30%), Positives = 261/514 (50%), Gaps = 23/514 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   ++  D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLLNKLELSQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++ + +++A +N     ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ +     +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSTMEEIQL 373

Query: 370 EPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                V A R       L+   +   L+      +K+ D L  + D   +AA  L+  + 
Sbjct: 374 PHRDKVAAARLEKLGAELETEKEHKALEKFTELVEKLQDTL--ELDAATLAAILLKRQQG 431

Query: 427 G-----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKA 479
                 + A   I  +     R + R +S           +F    W  + L VG +Q  
Sbjct: 432 KRPLFYIGADPMIEAIERDKQRRKERRESGRDGR-REGGRSFNNQDWDTYQLQVGREQGV 490

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + + ++  L    G+ + SIGAI++    T+V++
Sbjct: 491 QVKDIVGALANELGLTKGSIGAIKLAQGETYVQL 524


>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 460

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 193/345 (55%), Gaps = 3/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL  
Sbjct: 20  NLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLLQKLLPL 79

Query: 66  -NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L  
Sbjct: 80  ASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQTPTLMK 139

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH+  + + +  ++ +VLDEAD MLD+GF  D++ IL   PK+R+ L
Sbjct: 140 GVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNL 199

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT SP I  L++ +    V + +A  N    ++  + +LV    + + + ++LR   
Sbjct: 200 MFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEHKQHVLADLLRKE- 258

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+ S SR  + L        A+ G+ SQ ER  AL   + G+    +ATDV
Sbjct: 259 ATQVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGKITALVATDV 318

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L +V++ EL S  E+ +HR GRTGRAG  G+++ ++
Sbjct: 319 AARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLV 363


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   + +A E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 372


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSIQ------AIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL+ +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348


>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
 gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
          Length = 492

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/352 (36%), Positives = 199/352 (56%), Gaps = 10/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V  T +Q A +   L   D L  AQTG+GKT AF L + + +     +     
Sbjct: 20  ALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVNLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K L++  +   VLDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPI 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + ++  R+++A ENR  S ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDTDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N   M R  ER+ +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 365


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|152993738|ref|YP_001359459.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
 gi|151425599|dbj|BAF73102.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
          Length = 453

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 204/362 (56%), Gaps = 16/362 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
           NIP+ +   L   G+  +T +Q+  + P L+ KD+L  ++TGSGKT+AFG+ A+  T + 
Sbjct: 9   NIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIPAVMGTDVK 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123
            N        P  + I PTRELA QV  EL  + A K  + +    GGV +  +   L  
Sbjct: 69  SN-------KPQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRAQADSLAK 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHI++GTPGR+ DH+    L +  +K +VLDEAD MLD+GF ++I  I  + PK+++ L
Sbjct: 122 GAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNMPKQKQTL 181

Query: 184 MFSATISPAITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT  P I +LAK   KD   ++V+   E  + +++ Y        D+   +  ++  
Sbjct: 182 LFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYET-----PDKFKTLNALIGS 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +   + ++FC+T+A V      L +    V+ + G+L Q+ER+ A+ +  +   R+ +AT
Sbjct: 237 YKPDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKRIMVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D+ LVI+ +L  + E   HR GRTGRA   GM++ +   N   +   +  
Sbjct: 297 DVASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKCSWITS 356

Query: 362 EA 363
           +A
Sbjct: 357 QA 358


>gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
          Length = 492

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/456 (30%), Positives = 238/456 (52%), Gaps = 27/456 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH----RAGL 428
           P+   I E    + L D    + I    +++ ++     +P ++    L +     + GL
Sbjct: 386 PT---INENQIIKTLHDAKVSEGIISLYEQLTEIF----EPSQLVLKLLSLQFETSKIGL 438

Query: 429 CA--------PEEITPVSLVSGRDRFRDDSRAFKVG 456
                     P+E TP +  + +    + +R+FK G
Sbjct: 439 NQQEIDAIQNPKEKTPKT-SNKKTHQHEQTRSFKKG 473


>gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
          Length = 492

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
 gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
          Length = 481

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 221/409 (54%), Gaps = 15/409 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  LELEEKD-------PQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + LN+  +K  +LDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   ++ + +  I+ 
Sbjct: 179 VTMLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEVEGKNKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +  F  +AL G + Q++R   ++  + G+ +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDV 406
              +  +     PS+E + +   ++I ++ +       +Q D KK  D+
Sbjct: 359 DYIDKEISKREEPSLEEVNK--GKKIFEENIKDRLKIKVQKDNKKQKDI 405


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 199/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   +V +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKKVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F V+AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 13/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ + + + +ASE  + + I +  V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL E N   
Sbjct: 26  ILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+
Sbjct: 86  SPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369


>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 560

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 12/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  AL+  GY   + +Q   +   L   D++  AQTG+GKT AF L L S       
Sbjct: 15  PNILA-ALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLS------- 66

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
           +  PA   P  L +APTRELA+QV    E  Y+K   GV V    GG  +  + + L+ G
Sbjct: 67  KIDPAKREPQVLILAPTRELALQVATAFET-YSKQMPGVNVVAVYGGAPMGPQLKALRMG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRL DH+R     +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++
Sbjct: 126 AQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + ++   + IA++ +  S I+   +++    + NA++ +L     
Sbjct: 186 FSATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +       L    F+  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++
Sbjct: 306 ARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLV 349


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 205/354 (57%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I  A+++ G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N+         AL IAPTRELAVQ   EL     +  V V    GG S+ ++ +
Sbjct: 61  NKIDVINNVVQ------ALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V I ++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEM 348


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLLDTQAPEKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELLEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/346 (37%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL + N   
Sbjct: 26  ILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQNLLPDANTSA 85

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  ++
Sbjct: 86  SPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 146 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 206 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 263

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 264 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 324 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 369


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 198/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +A E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQAQKREVEWHP 372


>gi|332878110|ref|ZP_08445839.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683848|gb|EGJ56716.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 582

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 155/540 (28%), Positives = 267/540 (49%), Gaps = 44/540 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M +FE +   + I  A+++ G+   + +Q+  + P L E   D++  AQTG+GKT AFG 
Sbjct: 1   MNLFEQLGLDEPILRAITDMGFETPSEIQQKAI-PTLLEDDTDMVALAQTGTGKTAAFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   L+  + + +       L ++PTREL +Q+  EL+  YAK    V V    GG S+
Sbjct: 60  PLLQ-LIDTDSKLTQG-----LILSPTRELCLQIASELKN-YAKYLPKVNVVAVYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL 
Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +PK++   +FSAT+   +  +A+ + +  + + + + N+  S + +   +V    R  A
Sbjct: 173 HTPKEKSTWLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  +
Sbjct: 233 LKRLADANPDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++  R
Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELR 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE-------RDAQRILQDPLFLDSIQGDEKKMVDVL 407
           + + + +        +  P+   I E          + +  +P   D +    K++  + 
Sbjct: 353 KIKEIEKIIKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIEDYLPAIYKELQHID 412

Query: 408 LAKHDPEKIAAGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             +   +  A  F R    ++     PEE               D++  + GG S     
Sbjct: 413 REELIKKIFAVEFTRFFNYYKNAEVLPEE---------------DAKESRKGGDS----- 452

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G   + +++G +   + + L   L  +  + R  +  + V+   +F    AD  DL+  T
Sbjct: 453 GEVRYFINIGERDGYDWKTLKDFLKATLNLGRDDVFKVDVKNSFSFFNTEADQADLVMST 512


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/406 (33%), Positives = 209/406 (51%), Gaps = 12/406 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY N T VQE  +   L+ KD++V +QTGSGKT +FG+ L   +  EN +      P AL
Sbjct: 20  GYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLENKK------PQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+  ++  +     V      G   V  ++  L+   HIVVGTPGR  DH
Sbjct: 74  ILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLKQRVHIVVGTPGRTFDH 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+   L++S +K +++DEAD+ML++GF D +E I+      R  ++FSAT+   I  L K
Sbjct: 134 IQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRITMLFSATLEERIEKLCK 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            Y  +  ++ I  EN     I+     V  S R N +  ++      +AI+FC+T+  V 
Sbjct: 194 RYMNNPEKIEIKRENVTTDVIEQEYYKVDHSKRFNTLTKVIYAEVPDSAIIFCNTKVEVG 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                +    F   AL G + Q++R   +   + G+ +  +ATDVAARGID+ ++  VI+
Sbjct: 254 NVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAARGIDVEEITHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            E+    E  +HR GRTGRAG KG S+  +    +R    +      SV  +  P  E I
Sbjct: 314 YEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYSVPEKEIPQEEEI 373

Query: 379 RERDA---QRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAG 419
            +      ++  Q P F   ++G E  KK+  + +     +K+ AG
Sbjct: 374 EKGKKLFEEKARQRPKF-KKVKGHEIDKKITKIHINAGKKKKVRAG 418


>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
          Length = 477

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/339 (38%), Positives = 195/339 (57%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L + GY  +T +Q A L P L  +D++  A TGSGKT AFGLAL   L     
Sbjct: 26  PEVLAN-LRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERL--NPR 82

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF    A  AL + PTRELA QV  E+  L  A+  + V    GGV +  +   L++GAH
Sbjct: 83  RF----AVQALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEHGAH 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++  L   VLDEAD MLD+GF +DI  +    P  R+ L+FS
Sbjct: 139 VVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+ + KD  R+ + +++ +   I  R   V   +R +A+  +L +   ++
Sbjct: 199 ATYPEGIERIARQFMKDPQRIVVQAQHAE-GKIGQRWYEVQERERLHAVSQLLNHFRPES 257

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI FC+T+       +VL    F  +AL G+L Q++R   L    +    V +ATDVAAR
Sbjct: 258 AIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAAR 317

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  L+ VI+ +++ +PE  +HR GRTGRA  +G+++
Sbjct: 318 GIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLAL 356


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AI+F
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 367 -----QAPTWDEAFAGQL---RVATEKIQEAITEENL-SDYKTYANQLLEKYDATDIAAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 418 MLKM----LAKEPDKTPVHITEER 437


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 236/433 (54%), Gaps = 24/433 (5%)

Query: 3   IFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +FEN   +PQ   +AL E  ++  T++Q  +++  +   D++  AQTG+GKT AFG+ + 
Sbjct: 4   LFENFNILPQT-QKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIPII 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             +              +L + PTRELA+QV +E + L      + +AV  GG S  ++ 
Sbjct: 63  EKIDLN------IKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+   HI++ TPGR+ D +  K ++ S LK + LDEADEML++GF++ +E IL   PK
Sbjct: 117 KVLETKPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPK 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+ P I  +A  YQ +   + +  +N   S +     LV   D+   +V +
Sbjct: 177 KRQTVLFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+F +T+  V      L E+ F V  L G+L Q +R   +   R+ + ++ 
Sbjct: 237 LDLENPNSVIIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RR 355
           IATDVAARGID+  + +VI+ +LS   E  +HR GRTGRAG KG++  FV P  +   + 
Sbjct: 297 IATDVAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQLKS 356

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAK 410
            E   +E    ++++  P V+ I+E+  +   Q+ +F + I+ + +     +++  LL  
Sbjct: 357 LENYLKE---KLIFKTIPKVKDIQEKKLKN-FQEKIF-EMIKNNPQEDINDELIKNLLDN 411

Query: 411 HDPEKIAAGFLRI 423
            D ++I    L +
Sbjct: 412 FDNKQIIKALLNL 424


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 197/343 (57%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 13  IVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 73  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 187 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M
Sbjct: 307 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREM 349


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|294505859|ref|YP_003569917.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
 gi|294342187|emb|CBH22965.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
          Length = 478

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 198/339 (58%), Gaps = 10/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  L  VQ   +   L  +D++V +QTGSGKT AF L L   +  + +     
Sbjct: 54  QAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQ-- 111

Query: 73  SAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                L + PTRELA Q+  E E +     +T  + AV I GGV    +   L+NGA +V
Sbjct: 112 ----VLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVV 167

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DHI+    + S L+ +VLDEADEML +GF  D++ I++  P  R   M+SAT
Sbjct: 168 IGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSAT 227

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P + ++A+ +  D   ++++++     + +YR  LV   D+D  +  +L     ++A+
Sbjct: 228 MPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESAL 287

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+  VS   K L+   + +  +SG+LSQ++R  AL  +R+G+ R+ +ATDVAARGI
Sbjct: 288 IFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGI 347

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+ DL  V   ++  + E ++HRSGRT RAG +G ++ +
Sbjct: 348 DVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVL 386


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 172/541 (31%), Positives = 258/541 (47%), Gaps = 34/541 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   + +Q   +   +  +D++  A TG+GKT AF L +   L A+  R S  +
Sbjct: 104 ALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQRL-AQERRGSRGT 162

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           APL L +APTRELA+QV   +          V    GG  +  +   L+ G  +VV TPG
Sbjct: 163 APLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALKRGVDVVVATPG 222

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D I    L++  L+ VVLDEADEMLD+GF +DIE IL ++P  R+ ++FSAT+   I
Sbjct: 223 RAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQAVLFSATMPRRI 282

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             LA+ Y  D V V I  E     +   +   A +V  S    A+  IL       AIVF
Sbjct: 283 EVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAALGRILELERPTAAIVF 342

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TRA V   T+ L     +  AL G + Q+ R+  +  +R+GR  + +ATDVAARG+D+
Sbjct: 343 CRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLVATDVAARGLDI 402

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367
             L  V++ ++  +PE+ +HR GR GRAGR+G+++  V P +++  R  ERL        
Sbjct: 403 DQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHLRNIERLTGTPVPVA 462

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDPEKIAAGFL 421
                  +   R    +  L++ L  D              M+  L  + D  ++AA  +
Sbjct: 463 PVPTVADLAGARVERTKVALRERLLTDRQSAGRGADDGVAAMIASLAEEFDAVEVAAAAV 522

Query: 422 RIHRAGLCAPEEITPVSLVS----------------GRDRFRDDSRAFKVGGGSRDNFKG 465
           RI R    APE+   + +VS                GR  F         G G R    G
Sbjct: 523 RIARDVSGAPEDEIDIPVVSAPREGRRERDGRGGPAGRREF-----GGSRGQGPRPPKAG 577

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           ++   +S G       + ++  L   S ++ + IGAI++      VEV     D + R +
Sbjct: 578 TTRLFVSAGRAAGVRPQDIVGALANESRLSGRDIGAIQIHERHALVEVPEHAADEVLRAL 637

Query: 526 K 526
           +
Sbjct: 638 R 638


>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
 gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
          Length = 655

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 194/346 (56%), Gaps = 8/346 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + KD   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERR 355


>gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
 gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
          Length = 601

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/412 (34%), Positives = 212/412 (51%), Gaps = 12/412 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++  +L+  G+   T +QEA +   L   DVL  A TG+GKT AF L L        +
Sbjct: 11  PQLVS-SLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPLIERWALGKE 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                S P+ L + PTREL +QV           G++V    GG    R+ R L+ G H+
Sbjct: 70  ----PSDPVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQIRSLKRGTHV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR  DHI    L +  +KAVVLDEADEMLDLGF D+++ I ++ P+  +  +FSA
Sbjct: 126 VVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPEGVQTALFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGA 244
           T+ P I  +A  + K+ VR+ IA E     +   +   A +V  + R  A+  IL     
Sbjct: 186 TLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQIAYIVGRNYRTAALGRILDLEDP 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F  TR  V   T+ L    + V AL G L Q  R   ++  R G+    +ATDVA
Sbjct: 246 ELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKIDAIVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDL +L  VI+  + ++ E  +HR GRTGRAGR G ++ ++     R    L R   
Sbjct: 306 ARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRHIRALERATR 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHDP 413
             +     PS   ++ +  + + +  +     QG  ++   +V+ L  +HDP
Sbjct: 366 SKIEIRTVPSATDVQAKRLE-VTRGAIAEILAQGGLERYNVIVEALCEEHDP 416


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +PK+R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPKRRQTLLFSATYPAGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
 gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
          Length = 716

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 196/337 (58%), Gaps = 8/337 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71
           + E G+ + T +Q   L   L+++D++  AQTG+GKT AF + +  TLL E    +R++ 
Sbjct: 279 IDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITIIQTLLTEPEQEERYN- 337

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130
              P AL +APTRELA+Q+ ++   L   T + +   +GG+   ++++ LQ+    IVVG
Sbjct: 338 -GEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQKHLQDEIVDIVVG 396

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           TPGRL D +RGK L +S  + +V+DEAD MLD+GF  D++ ++  +P K  R+ L+FSAT
Sbjct: 397 TPGRLIDFVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRETPYKTYRQTLLFSAT 456

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LA N+  D  ++ I  E+  ++ +D +  +V    + N + N++        +
Sbjct: 457 FTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQKINVLYNLITQQELDRVM 516

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + R      T  L     +V  LSGE+ Q +R   L+  R+GR RV +ATDVA RGI
Sbjct: 517 VFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENFRNGRLRVMVATDVAGRGI 576

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  +  V++  L  +PE+ +HR GRTGRAG  G SV
Sbjct: 577 HIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSV 613


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 194/341 (56%), Gaps = 13/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E ++  
Sbjct: 10  IKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEENK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVG
Sbjct: 68  ----PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVG 123

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+ 
Sbjct: 124 TPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMP 183

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K YQ + + + +ASE  + + I +  V +   +++  + ++L      +AI+F
Sbjct: 184 EEMQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+
Sbjct: 240 CNTKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDV 296

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 297 DNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 337


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL E N   
Sbjct: 97  ILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQNLLPEANTSA 156

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+
Sbjct: 157 SPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEIL 216

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 217 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 276

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 277 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 334

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 335 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGTVDVLVATD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 395 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 440


>gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 193/336 (57%), Gaps = 7/336 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLV 361


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSKIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVKWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 279/563 (49%), Gaps = 64/563 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL++ GY   + +Q A +   L   D+L  AQTG+GKT AF L + + L   +
Sbjct: 12  LPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPMLARLDLAD 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R      P  L + PTRELA+QV    + + +      V    GG S+  + R L  GA
Sbjct: 72  RR------PQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLRQLSRGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L +  L  +VLDEADEML +GF +D+E+IL+ +P  R+  +F
Sbjct: 126 QIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSGRQTALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A  + ++   V I +     S I  R  LV   D+ +A+  IL      
Sbjct: 186 SATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDKLDALTRILDAEEKL 245

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+ + +     L    +   AL+G+++Q  R   ++ +++G   + +ATDVA
Sbjct: 246 DAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361
           ARGID+P +  VI+ ++  + E  +HR GRTGRAGR+G ++ FV P+   M +  ER  R
Sbjct: 306 ARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKAIERATR 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH--DPEK 415
           +   ++     PS E +  R   +  Q  L LD++Q ++     ++V+ L+ +H  D  +
Sbjct: 366 QPIEAIAL---PSREEVAGRRVAQFKQ--LVLDTLQQEDLGFFMEVVNGLVDEHEIDAHE 420

Query: 416 IAAGF---------LRIHRAG-----LCAPEEI--TPVSLV--------------SGRDR 445
           IAA           L++  +G       APE     P   V                RD 
Sbjct: 421 IAAALAFLAQRDKPLQVEESGRGWDIATAPERDRRPPRETVRDGMREERGEREPRPNRDE 480

Query: 446 FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
                RAF  G   R        + ++VG  Q A  + ++  +    GI  + IG I + 
Sbjct: 481 ILSRRRAFADGALVR--------YRIAVGRNQGATPKEIVGAIANEGGIEGKYIGQIHLF 532

Query: 506 PDLTFVEVSA----DGVDLLRRT 524
            D + VE+ A    + + LL+RT
Sbjct: 533 DDYSTVELPASLPGELLGLLKRT 555


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFGL +   +  +N +     
Sbjct: 15  AIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPMLEKIDTKNQKLQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTRELA+Q   EL  L     + +    GG  + R+ R L+    IVVGTPG
Sbjct: 72  ---GLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIRALKERPQIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  + L +  ++ +VLDEADEML++GF +DIE I+   P+ R+ L+FSAT+  AI
Sbjct: 129 RLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPENRQTLLFSATMPTAI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K+   V I ++      ID   V     ++ + +  +L     +  IVF  T
Sbjct: 189 KNIGIKFMKNPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLLDVQTPELTIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +
Sbjct: 249 KRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 309 THVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 260/521 (49%), Gaps = 38/521 (7%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P  + +  A+ + G+   + +Q   +   L  KDV+  AQTG+GKT AFG+ +  
Sbjct: 50  LFADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIPIL- 108

Query: 61  TLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118
                 +R  P   A  A+ + PTRELA+QV  E+  L   K G+ V    GG  + R+ 
Sbjct: 109 ------ERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQV 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA ++VGTPGR+ DH+    ++I+ +K VVLDEADEMLD+GFRDDIEFIL    +
Sbjct: 163 RALRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQ 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + + FSAT+  AI  +A+ Y K+   + +  +      I+     V    +  ++  +
Sbjct: 223 EVQTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRV 282

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  K  IVFCST+  V      L    +    L G L+Q +R   +   R G   + 
Sbjct: 283 LDVYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDIL 342

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++E V++ ++ ++ E+ +HR GRTGRAGR G +   +      +   
Sbjct: 343 VATDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRD 402

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKH-DPEK 415
           + R     +     PS+  +      ++L +        G E+  ++V+ ++ +     +
Sbjct: 403 IKRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELVEGIIGEEFTSVE 462

Query: 416 IAAGFLR--IHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            AA  LR  +HR AG    EE           +F D         G++    G      +
Sbjct: 463 AAAALLRMMMHRNAGDAVTEE----------QKFGDT--------GAQ---PGMVRLFFN 501

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           VG K +  AR  +  +   +G+  + IG+I +    TFVEV
Sbjct: 502 VGRKARVTARDFVGAIAGETGLPGRMIGSIDIYDRFTFVEV 542


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTRRFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
 gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
          Length = 478

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 198/339 (58%), Gaps = 10/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  L  VQ   +   L  +D++V +QTGSGKT AF L L   +  + +     
Sbjct: 54  QAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDKEEQQ-- 111

Query: 73  SAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                L + PTRELA Q+  E E +     +T  + AV I GGV    +   L+NGA +V
Sbjct: 112 ----VLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLKNGAQVV 167

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DHI+    + S L+ +VLDEADEML +GF  D++ I++  P  R   M+SAT
Sbjct: 168 IGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVSYMYSAT 227

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P + ++A+ +  D   ++++++     + +YR  LV   D+D  +  +L     ++A+
Sbjct: 228 MPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESAL 287

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+  VS   K L+   + +  +SG+LSQ++R  AL  +R+G+ R+ +ATDVAARGI
Sbjct: 288 IFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGI 347

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+ DL  V   ++  + E ++HRSGRT RAG +G ++ +
Sbjct: 348 DVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVL 386


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 195/354 (55%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEI 348


>gi|46581491|ref|YP_012299.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
 gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/390 (34%), Positives = 207/390 (53%), Gaps = 14/390 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++   + EA    G+ +L  VQ   L      +D++V ++TGSGKT AF L L     
Sbjct: 41  FADLAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLL---- 96

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +R  PA A   AL + PTRELA+QV  E   L+  TG+ VA   GGV   ++   L+
Sbjct: 97  ---ERLDPAEASTQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVGYGKQNDALR 153

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-R 181
            GAH VVGTPGR+ DH+  + + +  L+A+  DEAD ML +GF  D++ I    PK+R  
Sbjct: 154 EGAHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIA 213

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT  P +  LA  + ++   ++++      +   +        D+D A++ +L  
Sbjct: 214 TCLFSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKPMDKDRALIRLLEI 273

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +AI+FC+T+A+V   T VL    +    LS +LSQ +R   L+ +R+   R  +AT
Sbjct: 274 ENPSSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVAT 333

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+P L  VI  E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ R
Sbjct: 334 DVAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIAR 393

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPL 391
              + +   P P  E     D  R++ D L
Sbjct: 394 HYRMDIAHRPTPQDE-----DVARVVGDRL 418


>gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 654

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 198/338 (58%), Gaps = 3/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I +AL+  G+   + +Q+  + P L +KD+   A+TGSGKT +F + +   LL E  
Sbjct: 14  PELI-KALNSHGFKEASEIQDLTIKPILEKKDIFALAETGSGKTGSFAIPIMEILLEEKA 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             +P+   + L+  PTRELA Q  +  E + A+ G+  +  IGG  + ++  +L+ G H+
Sbjct: 73  LDNPSQQIVILS--PTRELAQQTNKFFEQVGAELGIKSSCIIGGEKIEKQIEELKEGVHV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  + K +++++  AVV DEAD + D+GF+ DIEFIL+  PK R+++M SA
Sbjct: 131 LVATPGRLNDLTKQKEIDLANCLAVVFDEADRLFDMGFKKDIEFILNGIPKTRQLIMVSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +   A  +    + + +  E+    +ID++  ++  +++   +V  L+ H    A
Sbjct: 191 TTNMDVLNTAFKFGSQPLEIKLNEESILVDNIDHKIAMIDKNEKMPLLVKQLQTHEDAYA 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+T+       + L +  F+   +SG + Q +R+  ++  R     + + TDVAARG
Sbjct: 251 IIFCNTQFQTHLVAEWLKKMNFKAKPISGRMPQNKRTRLMEEFRSKETTILVCTDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ D+ LVI+ +L +   + +HR GRTGRAG+ G ++
Sbjct: 311 LDIKDVNLVINFDLPNEAASYVHRIGRTGRAGKDGQAI 348


>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
 gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 197/343 (57%), Gaps = 9/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL+E GY   T +Q A +   L+ KDV+  AQTG+GKT AF L +   L  + +R
Sbjct: 10  QQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPILQRLAEQPER 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA QV    E     + +  A+  GGVS+  + + ++ G  I+
Sbjct: 70  KGQLRT---LVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIKAGVDIM 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+    +N+S+++ +V DEAD MLD+GF D+I  IL   PK+R+ L+FSAT
Sbjct: 127 VATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQTLLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
              AI  L+K      V + +   N+  S+++ + V    +DR   +++ L   GAKN  
Sbjct: 187 FDDAIFKLSKKLLNQPVLIEVNQRNQAASEVE-QIVYAVDADRKRELISHL--IGAKNWQ 243

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ +     K + +   +  A+ G+ SQ  R  AL   ++G+ RV +ATDVAA
Sbjct: 244 QVLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L+ VI+ EL    E+ +HR GRTGRAG KG+++ ++
Sbjct: 304 RGIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLL 346


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N+++  +R     N 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMN- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N+++  +R     N 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIEQTTKRKIDRMN- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 274/538 (50%), Gaps = 44/538 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A++  GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +    D
Sbjct: 22  PSVL-RAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----D 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             S A+   AL +APTRELA+QV        A    +  + I GG S   +   L+ GA 
Sbjct: 77  VTSTATQ--ALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRRGAQ 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S +  +VLDEADEML +GF +D+E IL  +P+ +++ +FS
Sbjct: 135 IIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVALFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   Y  D + V   ++     +I  R + VA   + +A+  +L     + 
Sbjct: 195 ATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR---VCIATDV 303
            IVF  T+ +     + L    F   A++G++ QQ+R   +  +R+G      + +ATDV
Sbjct: 255 MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  +R   +   +
Sbjct: 315 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPR--ERHLLKAIEK 372

Query: 363 ANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDP 413
           A    + E   P+VE +   +AQR+ +   F DSI            +K+V+    +HD 
Sbjct: 373 ATRQTMTEAELPTVEDV---NAQRVAK---FSDSITDALAKPGVALFRKLVEDYEREHDV 426

Query: 414 E--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
               IAA      R G   L APE   P    S   +   D  A K     R N    S 
Sbjct: 427 PMADIAAALALQSRDGEAFLLAPE--PPPERRSETKKPASDQHAEK-----RRNGPALST 479

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           + +SVG + K     ++  +    G++R   G I + PD + VE+ A    L R T+K
Sbjct: 480 YRISVGKRHKIGPGAIVGAIANEGGLHRSEFGHISIGPDFSLVELPA---KLPRATLK 534


>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
 gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
          Length = 803

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 209/369 (56%), Gaps = 17/369 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +RG  +L  +Q A+L P L  +D++  A+TG+GKT+ F L +  +LL+     +P+ 
Sbjct: 158 ALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIESLLS-----NPSD 212

Query: 74  A----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
           A    P  + +APTRELA QV  E++        +  VC+ GGV++  + R L+NG   V
Sbjct: 213 ARNRRPRCIVLAPTRELANQVEAEIQLTVPS---MRTVCVYGGVAITNQERALRNGVDFV 269

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D I+   L +  ++  VLDEAD+ML +GF +D+E I+   P++R+  +FSAT
Sbjct: 270 VGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQTFLFSAT 329

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AK 245
           +   +  L + Y K+ V +++  +++Q     ID  +   +   R   + +++  +G   
Sbjct: 330 MPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVTVYGKGA 389

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI F  T+      T  L   +   V L G+++Q +R   L+  RD R  V +ATDVAA
Sbjct: 390 KAICFTQTKREADEVTAALGRRMATEV-LHGDIAQAQRERTLKRFRDNRFSVLVATDVAA 448

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D++LV+H EL ++ E+ +HR GRTGRA ++G ++ +       R   + RE  V
Sbjct: 449 RGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFTPRENYRLRTIVRETGV 508

Query: 366 SVVWEPAPS 374
           +     AP+
Sbjct: 509 TFKSINAPT 517


>gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 629

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 169/564 (29%), Positives = 268/564 (47%), Gaps = 48/564 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAAGF 420
              P+ E + +R  ++          ++  +      LLAK  P         E +AA  
Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL 428

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGS------------- 466
           L++ +     P  + P + +  +  FRD D R     G    N +G              
Sbjct: 429 LKMAQG--ERPLILPPDAPMRPKREFRDRDDR-----GPRERNDRGPRGDREERPRRERR 481

Query: 467 -----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + + VG     E R ++  +     I+ + IG I++    + +E+      + 
Sbjct: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541
           +    RT  L+K + ++ LG   P
Sbjct: 542 LQHFTRTRILNKPMNMQLLGDAVP 565


>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
 gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
          Length = 608

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 166/552 (30%), Positives = 264/552 (47%), Gaps = 36/552 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+ E G+ +   VQE ++ P L     DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVSEEIRHAIEELGFEHPMPVQEEVI-PYLLGNGNDVVALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVH 115
            L   +  E      +    AL ++PTREL +Q+  +L        G+ V    GG S+ 
Sbjct: 60  PLIQKIDTE------SKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++G  I+V TPGRL D +      + ++  VVLDEADEML++GF D I  I + 
Sbjct: 114 TQIRSLRHGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R  L+FSAT+S  I  +A+NY  D   + + S N    ++++   +V   D+  A+
Sbjct: 174 IPADRNTLLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNHIYYMVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+    AI+FC T+         L    +    L G+LSQ +R   +Q  R    
Sbjct: 234 KRIVDYYPHIFAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNM 352
           +  +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    ++ 
Sbjct: 294 QFLVATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSK 353

Query: 353 QRRAERL----FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VD 405
            R  E++    F E  +       P+ + I  +   +++ + L  D ++ +       +D
Sbjct: 354 MRAIEKIIGKKFDEGTI-------PTAKEICSKQLYKVMDEILKTDVLEEEIAPFMTEID 406

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                 D E I    + +      A     PV       + R   R  +   G   ++K 
Sbjct: 407 RHFEYIDKEDIIKKIVSMEFGKFLAYYADAPVIERPTTQKERLSERKERQRKGGNRSYKA 466

Query: 466 SSWFSLSVGSKQKAEARW---LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
              F+    +  KA+  +   +M  + R     RQ +G I +    +++EV ++  D   
Sbjct: 467 EEGFTRLFINLGKADGFYPGEVMQFINRHVH-GRQEVGHIDLLSKYSYIEVPSEDAD--- 522

Query: 523 RTVKLDKGIQLK 534
           R +K   G+Q K
Sbjct: 523 RVMKALNGVQYK 534


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 238/444 (53%), Gaps = 30/444 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AI+F
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R + L
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMQPL 368

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA 
Sbjct: 369 -----QAPTWDEAFAGQL---RVATEKIQEAVTEENL-SDYKTYANQLLEKYDATDIAAA 419

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
            L++    L    + TPV +   R
Sbjct: 420 MLKM----LAKEPDKTPVHITEER 439


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 202/360 (56%), Gaps = 14/360 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+++ GY + T +Q+  + P L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-QAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLSKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     RV +A +      I+   V+   S RD         + +++ 
Sbjct: 187 TMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEKRQVLRDLID 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G   +NAI+FC+ +  V    K L ++ F    + G+L Q +R+  L+  RDG  R  
Sbjct: 247 REGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEGFRDGSLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAE 357
           +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ +  A+
Sbjct: 307 VASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICVPRDEKNLAD 366


>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 458

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 200/350 (57%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L   GY  +T +Q   L P L   DV+  ++TGSGKT AFG+ + ++L   N
Sbjct: 11  LPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLTSL---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            RF    A   L + PTRELA QV +EL  L  +   + +    GG ++  +   L++GA
Sbjct: 68  PRFFGTQA---LVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+  H+    L++  LK +VLDEAD MLD+GF D I  I    PK+R+ L+F
Sbjct: 125 HIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +PAI  L++N+Q + V + + S +   S+I+     V    R  A+  +L+    +
Sbjct: 185 SATYTPAIRELSRNFQSNPVEITVESVH-ADSEIEQYFYEVDHKQRRRALSALLKNFKPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++FC+T+         L    F    L G++ Q++R   L    +      +ATDVAA
Sbjct: 244 SAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           RG+D+ DL  V++ +++ +P+  +HR GRTGRAG+KG+++    P  +QR
Sbjct: 304 RGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQR 353


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 204/363 (56%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 9/365 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L     R     
Sbjct: 17  TLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVSRFRVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV  E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 74  ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D++P +R+ L+FSAT    
Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATFPEQ 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251
           I T+A    ++   V + S   Q S I+ R   L +  +RDNA+  +L  H  ++ +VFC
Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTHRPESTVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVAARG+D+ 
Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     + V    
Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369

Query: 372 APSVE 376
            P  E
Sbjct: 370 LPQPE 374


>gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM
           22836]
          Length = 608

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 207/386 (53%), Gaps = 12/386 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK FE   +   I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
           +   +  + +       P AL + PTREL +Q+  +L   Y+K    + V    GG S+ 
Sbjct: 61  ILQKIDIKQN------VPQALILCPTRELCLQIAGDLSD-YSKYIDNLRVLPVYGGSSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+V TPGRL D I  + + +S++K VVLDE+DEML++GF + I+ IL  
Sbjct: 114 SQIKSLKRGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSK 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R ML+FSAT+   I  + K Y ++   + I  +N   + + +   LV   D+  A+
Sbjct: 174 VPDERLMLLFSATMPKEIAKITKKYMQNPKEITIGRKNEGSNSVKHVYYLVHAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I  Y+     I+FC TR         L +  +   +L G+LSQ +R   +Q  R    
Sbjct: 234 KRIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNI 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRER 381
              + +  N        PS EAI E+
Sbjct: 354 VREIEKIINKKFEQGAIPSGEAICEK 379


>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 560

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 196/338 (57%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY   + +Q   +   L   D++  AQTG+GKT AF L L S       +  PA 
Sbjct: 20  ALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLS-------KIDPAK 72

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             P  L +APTRELA+QV    E  Y+K   GV V    GG  +  + + ++ GA I+V 
Sbjct: 73  REPQVLILAPTRELALQVATAFET-YSKQMPGVNVVAVYGGAPMGPQLKAIRQGAQIIVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+R     +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+ 
Sbjct: 132 TPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVLFSATLP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  +A+ + ++   + IA++ +  S I+   +++    + NA++ +L        I F
Sbjct: 192 HSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFDALIAF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +       L    F+  AL+G+++Q +R   ++ ++DGR  + +ATDVAARGID+
Sbjct: 252 VRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++
Sbjct: 312 PRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLV 349


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 34  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 89

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 90  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 147

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 148 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 207

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 208 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 266

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 267 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 326

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 327 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 386

Query: 374 SVEA 377
            ++A
Sbjct: 387 ELKA 390


>gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 591

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 168/564 (29%), Positives = 272/564 (48%), Gaps = 46/564 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +  +       +
Sbjct: 20  ALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLHNINLK------LN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELAVQV  E    +AK   G+ V    GG     + R L+ G+ ++VGT
Sbjct: 74  APQVLVLAPTRELAVQVS-EAYSDFAKYMKGINVVALYGGQRYDVQLRLLRQGSQVIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   L++SHL  +VLDEADEML +GF +D+E IL   P K +  +FSAT+  
Sbjct: 133 PGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQTALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + + +  +   V+I S      DI      V    ++ A+   L       AI+F 
Sbjct: 193 AIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKALARFLEVEDFDAAIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +    ++ L ++ +   AL+G+++Q  R   L  +++G   V IATDVAARG+D+ 
Sbjct: 253 RTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVLIATDVAARGLDVD 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  + Q  +R    + R   +++    
Sbjct: 313 RISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRNIERLMKLNIPEVQ 372

Query: 372 APSVEAIRERDAQRI---LQDPL----------FLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            P+ E +  R  +++   +++ L           L  +Q  EK  +D+       E +AA
Sbjct: 373 LPTAEKLNTRRLEKLAVKIKNHLKNRDIGMYREMLTRLQQTEKLDIDI-------ETLAA 425

Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             L++    R  + +PE +    L S   R+ +  R          +      + + VG 
Sbjct: 426 VLLKMAHGQRPLILSPEPVIERRLHSNSRRYNNRERI---------DVSKMDLYRIEVGR 476

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGI 531
               E R ++  +     IN   IG I++    + +E    +    +    RT  ++K I
Sbjct: 477 NDGVEVRHIVGAIANEGDINSSYIGNIKLFASHSTIELPKGIPGXILSHFTRTRIMNKPI 536

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKN 555
            L+ L  E    R  +  G +  N
Sbjct: 537 NLQ-LFDEASSARCVERYGIRRSN 559


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 201/368 (54%), Gaps = 2/368 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+  ++  + YV+ T VQ   +   L   D+LV AQTG+GKT AF + L   LL +
Sbjct: 16  NLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLVHKLLMQ 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++          L + PTRELA+QV   +  L   T +  A+  GG S+  + R  + G 
Sbjct: 76  SEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVRSFKAGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R K +++ H++ +V DEAD MLD+GF+D+I  +L   PK+R+ L+F
Sbjct: 136 DILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQRQTLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++ +I + +KN   +   + +A  N + + I+ R   V    + + + ++L     +
Sbjct: 196 SATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVDEERKLSLLCHLLSKERWQ 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         + +   + +A  G+LSQ  R + L+     + +V +ATDVAA
Sbjct: 256 QVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQVLVATDVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVIPQNMQRRAERLFREA 363
           RG+D+ DL  V++ EL    E+ +HR GRTGRAG+ G++V  F I    +  +     + 
Sbjct: 316 RGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDTAKLMSLETLLDR 375

Query: 364 NVSVVWEP 371
            +   W P
Sbjct: 376 RLPQQWYP 383


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 198/341 (58%), Gaps = 8/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S L          
Sbjct: 30  KAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILSRLDVSQ------ 83

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S P AL ++PTRELA+QV    E +     GV V    GG +   +   L+ G H+VVGT
Sbjct: 84  SKPQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLSALRRGVHVVVGT 143

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P+ +++ +FSAT+  
Sbjct: 144 PGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPEDKQVALFSATMPA 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K Y +DA  + + S+    ++   R ++V+   + +A+  IL     +  IVF 
Sbjct: 204 QIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRILEVENFEGMIVFV 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T++      + L    +   A+SG+++Q +R   +  ++ G+  + +ATDVAARG+D+ 
Sbjct: 264 RTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILVATDVAARGLDVD 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+ 
Sbjct: 324 RISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRE 364


>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
          Length = 591

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 21/385 (5%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY  L  +Q     P L  KD+L  A+TG GKT++F L +   LL E  R     AP A
Sbjct: 17  KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLKEG-RNGRGRAPRA 75

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTPGRL 135
           L +APTRELA QVG+E    +A  G  +A  C+ GG     +   ++ G  +++GTPGRL
Sbjct: 76  LCMAPTRELAHQVGKE----FADIGPSLASTCVYGGAPYMPQESAIRRGLDVIIGTPGRL 131

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----LDSSPKKRRMLMFSATISP 191
            DH+    L ++ +K ++LDEAD ML+ GF + I+ I    +  S  K +M++FSAT+  
Sbjct: 132 KDHLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPD 191

Query: 192 AITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKN-A 247
            I +  KNY  + V V+   +S NR    +D+ A+    ++R   I ++++ Y GA    
Sbjct: 192 FILSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRT 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I+F  T+   +     L   L Q V  L G++ Q++R  +LQ  RDG+ R  +ATDVAAR
Sbjct: 252 IIFTQTKKDANEL--ALETDLRQEVQVLHGDIPQKQREMSLQAFRDGKVRCLVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++LV+  E   + E+ +HRSGRTGRAGR G  +     N +     + R A +S
Sbjct: 310 GLDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGIS 369

Query: 367 VVWEPAPSVEAI---RERDAQRILQ 388
                AP  E +     RDA R L+
Sbjct: 370 FRRIGAPQPEDVIKASARDAFRSLE 394


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/384 (36%), Positives = 205/384 (53%), Gaps = 33/384 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E  N+P V+ + + + GY   T VQ A +   L+ +D++  ++TGSGKT AF L +
Sbjct: 256 MRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPM 315

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVH 115
            S +  L   +  +    P AL +APTRELA Q+  E+     + G  V   IG   ++ 
Sbjct: 316 LSYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIE 375

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+NGA I+V TPGRL D +    L +S    VVLDEAD M+D GF D I  IL +
Sbjct: 376 EDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAA 435

Query: 176 SP-------------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
            P                         + R+ +M+SAT+ P++  +AKNY K    V I 
Sbjct: 436 LPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIG 495

Query: 211 SENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHL 268
           +       ++ +A+ V   D R N +  +L  +G  K  IVF +T+++     K L    
Sbjct: 496 TIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSS 555

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F  V L G  +Q +R  ALQ  RDGR  V +ATDVAARG+D+PD+ LVI+  ++   E  
Sbjct: 556 FSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVY 615

Query: 329 LHRSGRTGRAGRKGMSV-FVIPQN 351
            HR GRTGRAG++GM++ F  P++
Sbjct: 616 THRIGRTGRAGKEGMAITFCGPED 639


>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
 gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
          Length = 506

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 204/357 (57%), Gaps = 19/357 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A    G++  + +Q+A L   L+ KDV+  A+TGSGKT AF + +  +LL   
Sbjct: 61  VSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHP 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L + PTRELA Q+G++ E L +  G++ AV +GGV +  +   L    H
Sbjct: 121 QAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPH 174

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG N+  LK +++DEAD +L++ F  +++ IL   PK+RR  +F
Sbjct: 175 IIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYLF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L +   +D  RV++++  +   ++    + +    ++  +V +L  H   
Sbjct: 235 SATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEHAGN 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ------------QERSNALQMMRDG 293
           +AIVFC+T A+  +   +L +   Q V L G++SQ            ++R  +L   +  
Sbjct: 295 SAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGSLNKFKSK 354

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
              + + TDVAARG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ V+ Q
Sbjct: 355 ARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQ 411


>gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 545

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 208/382 (54%), Gaps = 16/382 (4%)

Query: 13  EALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +AL+++GY   T +Q     A+LN D   KD++  AQTG+GKT AF L +        + 
Sbjct: 18  KALAKKGYEQPTPIQALTIPALLNGD---KDIIGQAQTGTGKTAAFSLPIL-------EN 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F P+    A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G  I+
Sbjct: 68  FEPSKVIQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKKGTDII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D +  K + +  LK  +LDEADEML++GF +DIE IL+++ + +RML FSAT
Sbjct: 128 VGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRMLFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  +AKN+ KD   + + +        D     V   D+  A+  I+        I
Sbjct: 188 MPNEIMKIAKNHMKDYEVLAVKARELTTDLTDQIYFEVHEKDKFEALCRIIDLTRDFYGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+   +     L +  +    L G++SQ  R   L+  +  +  V +ATDVAARGI
Sbjct: 248 VFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+ DL  VI+  +    E+ +HR GRTGRAG++G ++ F+ PQ   RR  ++ R     +
Sbjct: 308 DVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEY-RRLLQIQRIVKTEI 366

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
             E  P ++ + +    R++++
Sbjct: 367 RKERVPEIKDVIQAKKFRLMEE 388


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L        ++  PA
Sbjct: 33  KAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLV-------EKIDPA 85

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 86  SPNIQAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRSLKKNPHIIVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + + +++ VVLDEADEML++GF +DIE IL + P + + L+FSAT+  
Sbjct: 146 PGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + +    + + +  +L     + +IVF 
Sbjct: 206 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLDIQSPELSIVFG 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 266 RTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVATDVAARGLDIS 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAGR GM++ F+ P     R + + R         
Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITP-----REKDMLR--------- 371

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++I+G ++  VD L
Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTVDRL 404


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 202/336 (60%), Gaps = 13/336 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + E G+  LT +Q+  +   L  KD++  A+TGSGKT AF L + + +  +         
Sbjct: 62  VQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLPILNKINLDQ-------- 113

Query: 75  PL--ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           PL  AL + PTRELA QV  E+  L  +  G+ V    GG S   +   L+NG  IVVGT
Sbjct: 114 PLLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADALENGVQIVVGT 173

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    +++S +K VVLDEAD+MLD+GF D+I+ ++   P  R+ ++FSAT   
Sbjct: 174 PGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSRQTVLFSATFPE 233

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  L++ YQ+ A +V I  E+ + + I+        +D+ N ++ IL+ H + + I+FC
Sbjct: 234 SIEHLSRKYQRHAQQVII--EDEEQNLIEQLVYDSEDNDKTNVLMRILQQHPSDSTIIFC 291

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +V+   + L +       L G++ Q+ER   + M R+G  R+ +ATDVAARG+D+ 
Sbjct: 292 NTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILVATDVAARGLDID 351

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +LELVI+ +L  +PE  +HR GRTGRAG+ G++V +
Sbjct: 352 NLELVINFDLPLSPEIYVHRIGRTGRAGKTGVAVTI 387


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 211/374 (56%), Gaps = 13/374 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  A+ + G+   +++QE  +   L   D+   AQTG+GKT AFGL + + +  E
Sbjct: 36  GLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPMLAAVDPE 95

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
             R        AL +APTRELA+QV   +E  +AK   G+ V    GG     + R L  
Sbjct: 96  LRRTQ------ALVLAPTRELAMQVAEAIET-FAKHLPGIEVVPVYGGSPYPPQARALSR 148

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVVGTPGR+ DH+    L +  ++ +VLDEADEML +GF +D+E I  ++P +R++ 
Sbjct: 149 GAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTERQVA 208

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ P I  +A+++ +  V + ++ ++   + +  +  +V    +  ++  +L    
Sbjct: 209 LFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPFRHKVGSLTRVLATSD 268

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC TR +       L E       +SG+++Q++R   ++ +R G   V +ATDV
Sbjct: 269 ADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLVATDV 328

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RAERLF 360
           AARG+D+  + LV++ ++   PE  +HR GRTGRAGR G+++ FV P    R  + ER  
Sbjct: 329 AARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQIERTI 388

Query: 361 REANVSVVWEPAPS 374
           R+  V +   P+P+
Sbjct: 389 RQQLVEIEI-PSPA 401


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 200/348 (57%), Gaps = 10/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +SE GY   + +Q   +   L  KDVL  AQTG+GKT AF L L    LA 
Sbjct: 17  NLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPL----LAN 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
            D      AP  L +APTRELA+QV    +  Y++   G  V    GG S + +   L+ 
Sbjct: 73  ID--LSLKAPQVLVLAPTRELAIQVAEAFQT-YSRHLAGFHVMPIYGGQSYNIQFGQLRR 129

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ DH++ K L++S+L  +VLDEADEML +GF DD+E I+   P K +  
Sbjct: 130 GPQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTA 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K Y  D + V I ++     +I+ +  +V   ++ +A+  +L    
Sbjct: 190 LFSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +     + L    ++  AL+G+++QQ R   +  ++ G   + +ATDV
Sbjct: 250 FDGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+  + LV++ ++ ++ E+ +HR GRTGRAGRKG ++ F  P+
Sbjct: 310 AARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPR 357


>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 460

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 196/345 (56%), Gaps = 11/345 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  + + L + G+   T VQE  L PD+ E KD+L  AQTGSGKT+AF + L   LL  
Sbjct: 12  LPSELTKLLGDMGFKGFTPVQEQCL-PDILEGKDLLAQAQTGSGKTLAFAIGL---LLRI 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           N R+    A   L + PTRELA QV +E+  +  +     V+ +C GG+    +   L++
Sbjct: 68  NPRYFSTQA---LIMCPTRELADQVAKEIRRVARFMNNIKVLTLC-GGMPFGPQIGSLEH 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL +H+R + L++ +L  +VLDEAD MLD+GF D I  ++  +P  R+ L
Sbjct: 124 GAHIVVGTPGRLLEHLRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVLETPSTRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  ++  +Q +  ++ I        DI         + +   +++ L Y G
Sbjct: 184 LFSATYGDNIEEISNEFQNNPSQIQIEVNQDLKPDIKQFFARTEKAQKYETLLDSLAYFG 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVFC+T+A        L E     VA+ G+L Q++R   L    +  A + +ATDV
Sbjct: 244 PRQAIVFCNTKADTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKSACIMVATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ +++LVI+ + + + +   HR GRTGRAG  G ++  I
Sbjct: 304 AARGIDVKEIDLVINFDTTRDIDVHTHRIGRTGRAGHSGQALSFI 348


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 185/331 (55%), Gaps = 8/331 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76
           G+   T +Q   +   +  +DVL  AQTG+GKT AF + +   +     RF   S     
Sbjct: 20  GFKRTTDIQFKAIPSIMEGEDVLAIAQTGTGKTAAFAIPVIDKI----HRFKTNSQSYGI 75

Query: 77  -ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             + + PTRELA+Q+G+  E L   T V V    GGV   R+   LQ+G  +++ TPGR+
Sbjct: 76  KCIVMVPTRELALQIGKVFESLANHTRVKVFTLHGGVEQERQIAKLQDGIDVLIATPGRM 135

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I  + + +  +  +VLDEAD MLDLGF +DI +I     KK + L FSATI+  I  
Sbjct: 136 FDLINQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKKKHQTLFFSATINDEIKK 195

Query: 196 LAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           LA +  K +A+R+ ++ E+R   ++ +  + V + D+   +   L+ H     IVF  TR
Sbjct: 196 LAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFLDRFLQDHPEGKVIVFVRTR 255

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R  + +A   F  V++ G+  Q ER+ A+Q  R G  RV IATDV+ARGID+PD++
Sbjct: 256 VRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRVLIATDVSARGIDVPDVD 315

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VI+ +L   PEN +HR GRTGR  + G ++
Sbjct: 316 FVINYDLPEKPENYVHRVGRTGRGMKLGDAI 346


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 63  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 118

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 119 --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 176

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 177 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 236

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 237 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 295

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 296 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 355

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 356 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 415

Query: 374 SVEA 377
            ++A
Sbjct: 416 ELKA 419


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             ++P    + L E GY ++T VQ A L   L+ +DV   A+TGSGKT AFG+ L   + 
Sbjct: 7   LNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIGLLHHI- 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
            ++ RF       AL + PTRELA QVG  L  L  + +   V+ +C GG  +  +R  L
Sbjct: 66  -DSTRFQTQ----ALILCPTRELADQVGNVLRQLARFTRNIKVLTLC-GGQPMSAQRDSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HIVVGTPGR+ DHI  + L +  L  +VLDEAD ML++GF +D+E I++++P  R+
Sbjct: 120 VHPPHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEATPASRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    IT ++  +Q+DA+ V +  +  +   ID +    + +++   ++ +L  
Sbjct: 180 TLLFSATWPDGITAISTRFQRDALSV-VTEDVSELPSIDQQFFEASHNEKLGLLIALLSD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VFC+T+         L       + L G+L Q++R   L    +G  RV +AT
Sbjct: 239 RQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L +V++ +L+ +PE  LHR GRT RAG  G++V ++  +   RA  L  
Sbjct: 299 DVAARGLDIKSLAMVVNYQLAWDPEVHLHRIGRTARAGEHGVAVSLVAADEMARAHALED 358

Query: 362 EANVSVVWEPAPSVE 376
                + W  A +++
Sbjct: 359 FLQQKLPWVSASTLK 373


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 234/446 (52%), Gaps = 38/446 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +   +  +N    
Sbjct: 13  VMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVDVKN---- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL +APTRELA+QV  EL  + A   V V    GG  + R+ R L+   H++VG
Sbjct: 69  --GAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L + H++ VVLDEADEML++GF +DIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A+ +  D   V + ++     +I    + V    + + +  +L     + AIVF
Sbjct: 187 DPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    + L    +    + G+LSQ +R + L+  ++G   + +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P+ +          +R+ ER+
Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERM 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
                     +P    EA+     QRI  + L L+  + +     K+  + LL +HD   
Sbjct: 367 ----------KPPTLNEAL--EGQQRIAIEKL-LNVAEAENLSFYKRAAEELLEEHDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVS 441
           I A  L++    L    + TPV L  
Sbjct: 414 IVAACLKM----LTREPDTTPVKLTE 435


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 236/441 (53%), Gaps = 24/441 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNSVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AI+F
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN----- 364
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M     R+  E       
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYL--RIVEETTKKRMQ 366

Query: 365 --VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
              +  W+ A + +    R A   +Q+ +  +++  D K   + LL K+D   IAA  L+
Sbjct: 367 PLQAPTWDEAFAGQL---RVATEKIQEAVTEENL-SDYKTYANQLLEKYDATDIAAAMLK 422

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           +    L    + TPV +   R
Sbjct: 423 M----LAKEPDKTPVHITEER 439


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 16/374 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  A+ + G+   T++Q A +   L  +D+   AQTG+GKT AFGL L + +   
Sbjct: 33  GLPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAAI--- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                P     AL + PTRELAVQV   +  +  A   V V    GG     +R  L+ G
Sbjct: 90  ----DPTPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAALRAG 145

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF +D++ IL  +P  R+  +
Sbjct: 146 AQVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQAAL 205

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAV--LVALSDRDNAIVNILRY 241
           FSAT+ PAI ++A  +  + V + +   +RQ S +D  R +  +V   D+ +A+   L+ 
Sbjct: 206 FSATMPPAIRSIAAKHMTNPVDIAV---SRQSSTVDSVRQIYAVVPFRDKVDALTRFLQV 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF  T+ +  +    L         ++G++ Q+ER   ++ +RDGR  V +AT
Sbjct: 263 TEGDAAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVLVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-RAERL 359
           DVAARG+D+  ++LV++ +    PE  +HR GRTGRAGR G ++ F  P+ M R RA   
Sbjct: 323 DVAARGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRAIER 382

Query: 360 FREANVSVVWEPAP 373
                +  +  P+P
Sbjct: 383 ATRGTLEQIVPPSP 396


>gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 618

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 169/564 (29%), Positives = 268/564 (47%), Gaps = 48/564 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAAGF 420
              P+ E + +R  ++          ++  +      LLAK  P         E +AA  
Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL 428

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGS------------- 466
           L++ +     P  + P + +  +  FRD D R     G    N +G              
Sbjct: 429 LKMAQG--ERPLILPPDAPMRPKREFRDRDDR-----GPRERNDRGPRGDREERPRRERR 481

Query: 467 -----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + + VG     E R ++  +     I+ + IG I++    + +E+      + 
Sbjct: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541
           +    RT  L+K + ++ LG   P
Sbjct: 542 LQHFTRTRILNKPMNMQLLGDAVP 565


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 199/344 (57%), Gaps = 14/344 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL++ GY   + +QE  + P L E  ++L +AQTG+GKT AFGL L         +  P
Sbjct: 17  QALTDLGYQQPSPIQEQSI-PILNEGHNLLGTAQTGTGKTAAFGLPLLG-------KIDP 68

Query: 72  ASA-PLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +   P  L +APTRELA+QV   L+  +AK    V V    GG  ++++ + L +G  +V
Sbjct: 69  SKKYPQMLVLAPTRELAIQVSEALQS-FAKYLPKVKVLAVYGGQPMYQQLKALHDGVQVV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+  K L +  + AVVLDEADEML +GF +D+E IL ++P + +  +FSAT
Sbjct: 128 VGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQCALFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  +A+ Y  DA  V IAS       I+ R +++  + + + +  ++        I
Sbjct: 188 MPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRANQKFDVLTRLIEAQEIDGTI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+ + +   + L    +    L+G+LSQQ R   +  +++G   + IATDVAARG+
Sbjct: 248 VFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVIATDVAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  +  V + ++  + E  +HR GRTGRAGR G ++ FV PQ 
Sbjct: 308 DVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQE 351


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 186/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   GY N T +QE  +    + KD+L  AQTG+GKT AF + +   L    ++ +
Sbjct: 29  ILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQMLTYSKEKTA 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+    +    +  +   V  GGV    +R  L+ G  I++ 
Sbjct: 89  QKRI-RTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDALRKGIDILIA 147

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  D++ ++   PKKR+ L+FSAT+ 
Sbjct: 148 TPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQTLLFSATMP 207

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +  ++  +V +  E+     I      V+ SD+ + + ++L+    ++ +VF
Sbjct: 208 AEIQKLASHILEEPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVF 267

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  K LA+   Q  A+ G  SQ  R NAL   +D + RV +ATD+AARGID+
Sbjct: 268 SRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRVLVATDIAARGIDI 327

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DL  VI+ +L + PE+ +HR GRTGRAG+ G ++
Sbjct: 328 DDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAI 362


>gi|332534400|ref|ZP_08410240.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036134|gb|EGI72609.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 462

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 197/342 (57%), Gaps = 7/342 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 11  LPAGLVDNLSTLGYAHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 71  FRIQ------SLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P+ R+ L+F
Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPQNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK   K+   V +  E  + +   Y   +     R   +  +L     +
Sbjct: 185 SATFPRAIEAIAKRVLKNPEMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 245 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFSNKSASILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           RG+D+ D+++VI+  L+ + +  +HR GRTGRAG+KG++  +
Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRVGRTGRAGKKGIACSI 346


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 190/346 (54%), Gaps = 6/346 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I +AL+  G  +   +Q   L   L  +D++  A+TG+GKT+ FG+      +  +D 
Sbjct: 41  QDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQRAVGRDDA 100

Query: 68  ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + +   AP AL + PTRELAVQVG +L          VA   GG     +  +L+ G
Sbjct: 101 GWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQIAELEKG 160

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D  R   L++SH++ VVLDEADEMLDLGF  D+E +L + P  R+ ++
Sbjct: 161 VEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVPAVRQTML 220

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYH 242
           FSAT+   +  +A+ Y    + +  A+ +   +  D R V+      D+D  +  IL+  
Sbjct: 221 FSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEVVARILQAE 280

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   +I+F  T+ + ++    L    F    L G+L Q  R  AL+  R+ +  V +ATD
Sbjct: 281 GRGRSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNSKVDVLVATD 340

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  VI+ +   + +  LHR+GRTGRAG KG ++  +
Sbjct: 341 VAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFV 386


>gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580]
 gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580]
          Length = 481

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 192/335 (57%), Gaps = 6/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   GY   T+VQ  ++   L+++DV+V ++TGSGKT AFG+ L      E ++  
Sbjct: 15  ITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCELTEWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  +L  +     +  A   G  S  R++ +L+   HIVVG
Sbjct: 73  ----PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGR+ DHI    L +  LK +V+DEADEML++GF D +  I+   P++R  ++FSAT  
Sbjct: 129 PPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTMLFSATFP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L+  Y KD +++ I +     +DI+++ ++V  +D  + +V++       + IVF
Sbjct: 189 EDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLIIVNENDPFSLLVDLFIVENPDSCIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+     L+   +    + G + Q++R   +   R G  R  IATDVAARGID+
Sbjct: 249 CRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  VI+ EL  + E+ +HR+GRTGRAG +G ++
Sbjct: 309 ENITHVINYELPLDQESYVHRTGRTGRAGSRGKAI 343


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L +KD++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSLQKIVKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P  L + PTRELA QV +  + +YAK    V     +GG S  ++ + +  
Sbjct: 69  SEK--PGKGPRVLVLTPTRELAAQVEKNAQ-IYAKNMKWVRSVTLVGGSSFGQQIKAMSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH+R   ++   L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L
Sbjct: 126 PIDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           +FSAT   A+  LA+   K+   + I  E++Q   ID + +     +  N +++ ILR  
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVIEIEREDKQ-GKIDEQLLYCDDKNHKNRLLDHILRDA 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATD
Sbjct: 245 NIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 305 VAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAI 347


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 169/544 (31%), Positives = 270/544 (49%), Gaps = 32/544 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I  A+++ G+ + T++QE  +   L  +DVL  AQTG+GKT AF L + + +   
Sbjct: 11  NLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPMLAHVDPN 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           N          AL +APTRELA+Q    +    A+TG +  V + GG +   +   L++G
Sbjct: 71  NRHVQ------ALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQLGALRDG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L++S ++  VLDEADEML +GF +D+E I    P++R   +
Sbjct: 125 AQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPEERISAL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +  +   V ++S +     I     +V    +  A+  +L    A
Sbjct: 185 FSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRHKIGALARVLATTEA 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  TRA+       L+    Q  ALSG+++Q++R   +  +R G   V +ATDVA
Sbjct: 245 DAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR+G ++ FV P+  Q  RR E++ R
Sbjct: 305 ARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRRIEKVTR 364

Query: 362 EANVSVVWEPAPS-----------VEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVL-- 407
              ++ V  P P+            EA+      R+ + D L  + I   E    D +  
Sbjct: 365 -TQMTQVELPTPAEVSGLRARKLLAEAVERHAVGRLHVYDDLIAEFIAAQEDAQNDGMEL 423

Query: 408 --LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-K 464
             LA      +A G           PE++T V   +  DR     R    GG  R  F +
Sbjct: 424 LSLADLVSALLALGVRDPGPQATDEPEKLT-VGFTADDDRREKRGRREDRGGQRRGGFDE 482

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD--LLR 522
             + + + VG +       ++  +    G+    +G I + P  + + V+ D +D   LR
Sbjct: 483 PGTTYRVEVGRRDGVAPGAIVGAMTNEGGLRGSQLGKIDIFPSFSLIHVN-DELDQATLR 541

Query: 523 RTVK 526
           R  K
Sbjct: 542 RIAK 545


>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
 gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 459

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 195/347 (56%), Gaps = 4/347 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66
           P+++ +AL E GY   T +Q   +   L+  D++  AQTG+GKT AF L L   LL + +
Sbjct: 15  PEIL-KALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQKLLPQAS 73

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L  G 
Sbjct: 74  SSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTPSLMKGV 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+  + + +  ++ ++LDEAD MLD+GF  D++ IL   PKKR+ LMF
Sbjct: 134 EILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKKRQNLMF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  L++ +  +   + +A  N     +  +   +    +D+ +  +L    ++
Sbjct: 194 SATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQLDKDSKDSFLAKLLLESNSE 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+ + SR  + L        A+ G+ SQQER  AL+  + G+    +ATDVAA
Sbjct: 254 QTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVTTLVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  L +VI+ EL S PE+ +HR GRTGRAG  G ++  V P+ 
Sbjct: 314 RGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEE 360


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 196/358 (54%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S L A   RF     
Sbjct: 22  LEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V  ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIEQAQKRDVEWRP 372


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/531 (29%), Positives = 267/531 (50%), Gaps = 30/531 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+ + G+   + +Q A +   +  +DV+  AQTG+GKT AF L +    LA  
Sbjct: 68  LPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPI----LARI 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           DR     AP AL +APTRELA+QV    +      G +  + I GG S   +   L+ GA
Sbjct: 124 DR--SVRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRGA 181

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML +GF++D+E IL  +P  +++ +F
Sbjct: 182 QIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVALF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y  +   + + S+ R   +I  R ++V+  ++ +A+  IL     +
Sbjct: 242 SATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEFE 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVAA
Sbjct: 302 AMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDVAA 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREAN 364
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  + R  R    A 
Sbjct: 362 RGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPR--EGRLLRSIERAT 419

Query: 365 VSVVWE-PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI----- 416
            S + E   P+V+ + +   Q+   D      DS     +++++    +HD   +     
Sbjct: 420 KSQLHEMKLPTVDEVNDSRKQKFADDLTEALADSQVPVFRELIEEYAEEHDTPLVDIAAA 479

Query: 417 ------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-----KG 465
                 +  FL          +                 SR  + G G R +      +G
Sbjct: 480 IAAQAQSGDFLMKEPPRGRRHDRDRDRFDRDRNRGRDGRSRGER-GQGKRADLVEFDREG 538

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           ++ + +SVG +Q      ++  +    G++ +  G I ++ D T VE+ A+
Sbjct: 539 TATYRISVGRRQHVRPGAIVGAIANEGGLSSKDFGHIDIRGDHTLVELPAN 589


>gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622]
 gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622]
          Length = 461

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 189/337 (56%), Gaps = 8/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E  +   T +Q   +   L+ +D++  AQTGSGKT AF L L   +  ++ +    
Sbjct: 14  QVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQKVQLQHRKVQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL + PTREL  QV  E+  L  +  G+ V V  GG  +  +   L+ GAH+ VGT
Sbjct: 72  ----ALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGAHLAVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +  + L    L  VVLDEAD MLD+GFR+D+E IL + P +R+ ++FSAT  P
Sbjct: 128 PGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLFSATFPP 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L++++Q+  VRV + +      DI          D+   ++ ILR++   +AIVFC
Sbjct: 188 DIEALSRDFQRQPVRVTVEAAT-AGPDIQQVRYDCEPGDKQALLLRILRHYQPASAIVFC 246

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A+V    K L+     V  L G+L Q ER   +   R+   RV IATDVA RGID+ 
Sbjct: 247 NLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAGRGIDVE 306

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L+ VI+ +L    E  +HR GRTGRAGR G++V ++
Sbjct: 307 ALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIV 343


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 8/374 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EA++  GY   + +Q   +   L  K +L  AQTG+GKT AF L L S + A   
Sbjct: 13  PAVL-EAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLLSRIDAS-- 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
                 AP  L +APTRELA+QV        +K     V    GG     + + L+ GA 
Sbjct: 70  ----VMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGLRRGAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P   +  +FS
Sbjct: 126 VIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQRALFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +A+ Y +DA  V I SE R    I    + V    + +A+  IL       
Sbjct: 186 ATMPPQIKKVAQTYLRDATEVKIESETRTVERISQFVLPVYAERKLDALTRILEVEPVDG 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+A  +   + L+     V  L+G+L+Q++R   ++ ++ G+  + +ATDVAAR
Sbjct: 246 TIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIIVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P +  VI+ ++  + E  +HR GRTGRAGR+G ++ ++    +     L R  N  
Sbjct: 306 GLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLERATNSP 365

Query: 367 VVWEPAPSVEAIRE 380
           +     PS  A+++
Sbjct: 366 MESYELPSPNALKK 379


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 197/358 (55%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + L A +        
Sbjct: 22  LAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ---- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   + +A E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 372


>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 500

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/339 (37%), Positives = 195/339 (57%), Gaps = 6/339 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72
           ++E G+   TSVQ  ++   L   D+LVS+QTGSGKT AF L L + L+ +N   SP   
Sbjct: 34  VAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLINQLIEDNPNNSPVPG 93

Query: 73  -SAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            + P  L + PTRELA QV  + +  +    G+ +A  +GG+   ++ + L+ GA +VV 
Sbjct: 94  RAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQALK-GALLVVA 152

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K + +  +K +V+DEAD MLD+GF DD+E I      + + LMFSAT +
Sbjct: 153 TPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAGRNQTLMFSATFA 212

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249
           P I +LA     DA R+ +A    +H++I+ +     ++S +   + +IL       A+V
Sbjct: 213 PKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEHILADATLDQAVV 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+    +    L  + ++  AL G + Q  R   L+ +R G  ++ +ATDVAARGID
Sbjct: 273 FASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGHTKILVATDVAARGID 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  VI+  L   PE+  HR GRTGRAGR G+++ ++
Sbjct: 333 VPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLV 371


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 212/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ +        D+ +    
Sbjct: 63  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVL-------DKIAVGEF 115

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 116 VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 174

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 175 PGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTLLFSATYPQ 234

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++++L ++  ++ +VFC
Sbjct: 235 GIEQISARVQRQPVNVEV-DDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPESCVVFC 293

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 294 NTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIK 353

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL LV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 354 DLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQMKLKWT 412

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 413 PADQV----SRSANTMLEPDMVTLCIDGGRKAKI 442


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 206/388 (53%), Gaps = 19/388 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L + S L   
Sbjct: 8   NLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSLLARG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G 
Sbjct: 68  RAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L F
Sbjct: 125 DVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------I 238
           SAT++P I  +   +  +  R+ +A +     +I    V+   S +D            +
Sbjct: 185 SATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEKRKLLRML 244

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +   G K  NAI+FC+ +  V    K L +H +    + G+L Q +R+  L   R+G  R
Sbjct: 245 IDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDGFRNGELR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRR 355
             IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P     R
Sbjct: 305 FLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVP-----R 359

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA 383
            E+ F +    +V +  P +E + + DA
Sbjct: 360 DEKNFEDVE-RLVQKEIPRLENLLQTDA 386


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/406 (32%), Positives = 210/406 (51%), Gaps = 12/406 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY N T VQE  +   L+ KD++V +QTGSGKT +FG+ L   +  EN +      P AL
Sbjct: 20  GYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLENKK------PQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+  ++  +     V      G   +  ++  L+   HIVVGTPGR  DH
Sbjct: 74  ILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLKQRVHIVVGTPGRTFDH 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+   L++S +K +++DEAD+ML++GF + +E I+      R  ++FSAT+   I  L K
Sbjct: 134 IQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRITMLFSATLEERIEKLCK 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            Y     ++ I+ +N     I+     V  S R N +  ++      +AI+FC+T+  V 
Sbjct: 194 RYMNHPEKIEISKKNVTTDIIEQEYYKVNHSKRFNTLTKVIYAEVPDSAIIFCNTKVEVG 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                +    F   AL G + Q++R   +   + G+ +  +ATDVAARGID+ ++  VI+
Sbjct: 254 NVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAARGIDVEEITHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            E+    E+ +HR GRTGRAG KG S+  +    +R    +      SV  +  P  E I
Sbjct: 314 YEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYSVPEKEMPQEEEI 373

Query: 379 RERDA---QRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIAAG 419
            +      ++  Q P F   ++G E  KK+  + +     +K+ AG
Sbjct: 374 EKGKKLFEEKARQRPKF-KKVKGHEIDKKITKIHINAGKKKKVRAG 418


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 249/510 (48%), Gaps = 34/510 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +QE  +   L   D++  AQTG+GKT A+G  + S       R +  
Sbjct: 17  KAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS-------RLNDT 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
           +   AL +APTRELAVQV  EL+ L       V    GG S+ R+ R L ++   IVVGT
Sbjct: 70  NGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKDNIDIVVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ +  +VLDEADEML++GF DDIE I+ ++P +R+ L+FSAT+  
Sbjct: 130 PGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTLLFSATMPA 189

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I  LAKNY K DA  V I   +   S I+    ++    R  A+  +L      +AI+F
Sbjct: 190 PIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAIIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V    + L    + V  + G++SQ  R   L+  ++G   + IATDVAARGID+
Sbjct: 250 CRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ +L  + E+ +HR GRTGRA R G +  ++        +++ R    ++  +
Sbjct: 310 DGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTKSTITEK 369

Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426
             P+   I  R    I+ +    +DS  GD    V     L   +DP  I A  ++I   
Sbjct: 370 SVPTANEIHSRKFTNIMNEIKETIDS--GDFSTFVPSAIELNEAYDPISIIASLMKIK-- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                              F  ++        S+++ +       SVG K     + L+ 
Sbjct: 426 -------------FENESSFEYNTDTLDAPSASKNDVR----LFFSVGKKDGLTPKILIN 468

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +   + +   +IG I +  + +FV +  D
Sbjct: 469 YIKDQTRVRASAIGKIDLMDNFSFVTIDED 498


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITMLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240
           T++P I  +   +  + VR+ +A +     +I+   ++   S +D            ++ 
Sbjct: 187 TMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRALID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R  
Sbjct: 247 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++
Sbjct: 307 VASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 360


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 187/316 (59%), Gaps = 7/316 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KDV+  AQTG+GKT AFG      +  +N    PA    AL IAPTRELAVQ   EL   
Sbjct: 4   KDVIGQAQTGTGKTAAFGFPTLEKIDTDN----PAVQ--ALIIAPTRELAVQSQEELFRF 57

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               GV V    GG S+ ++ + L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEA
Sbjct: 58  GRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 117

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DEML++GF +DIE I+   P++R+ L+FSAT+  AI  +   + K+   V IA++     
Sbjct: 118 DEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTE 177

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +D   + V  +++ + +  ++     + +IVF  T+  V   T+ L    F+   + G+
Sbjct: 178 LVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGD 237

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q +R   L+  ++G   V +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGR
Sbjct: 238 LDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGR 297

Query: 338 AGRKGMSV-FVIPQNM 352
           AG+ G S+ FV P  M
Sbjct: 298 AGKSGQSITFVAPNEM 313


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 191/347 (55%), Gaps = 7/347 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+  G  +   +QE  L   L  +D++  A+TG+GKT+ FGL     ++  +D 
Sbjct: 23  QDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRDDE 82

Query: 69  ----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    AP AL + PTRELA+QVG +L          VA   GGV +  +   L+ G
Sbjct: 83  GWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLRRG 142

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D  +   LN+  +K VVLDEADEMLDLGF+  +E IL   P+ R+ ++
Sbjct: 143 LEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQSML 202

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS--DRDNAIVNILRY 241
           FSAT+   +  +A+ Y    +R++ A  E+   +    R V+      D+D  I  ILR 
Sbjct: 203 FSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRILRA 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+   +R  + L    F    L G+L+Q  R  AL+  R G+  + +AT
Sbjct: 263 TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V ++
Sbjct: 323 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLV 369


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 12/413 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN      
Sbjct: 17  KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    I+VGTP
Sbjct: 71  PAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FSAT+ P 
Sbjct: 131 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 191 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAARG+D+  
Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M      E+L R   + +  
Sbjct: 311 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 368

Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +P    EA R + A      D L  D       +    LL K+D  ++ A  L
Sbjct: 369 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 421


>gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246]
          Length = 572

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/524 (30%), Positives = 257/524 (49%), Gaps = 26/524 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  GY   T +Q   + P +   D++  A TG+GKT AF L +   L     R  P 
Sbjct: 34  ERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHGLARSTARTKPT 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L + PTRELA+QV   +       GV V    GG  + ++ R L  G  +VV TP
Sbjct: 94  S----LILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRGIDVVVATP 149

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR  DH+R   L +  +  VVLDEADEMLD+GF +DIE IL ++P +R+  +FSAT++P 
Sbjct: 150 GRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTALFSATMAPR 209

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I  +A  + K+A  +++  +     +   +   A +V    +  A+  +L       A++
Sbjct: 210 IKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDGESPAAALI 269

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC TR+ V   T+ L    ++  AL G ++Q  R   +++ R G+A + +ATDVAARG+D
Sbjct: 270 FCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVATDVAARGLD 329

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  V++  L    EN +HR GR GRAGR+G+++ V     Q     + R     + +
Sbjct: 330 VEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIERHTGQRIEY 389

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRI-H 424
              P+   +RE+  +R        +++   E    + M   L+ + DP  +A   L++ H
Sbjct: 390 GQVPTAATLREKRLERT--KVAIRETVAAGELEAFRAMFGSLVGELDPTDVALAALKLAH 447

Query: 425 RA--GLCAPEEITPVSLVSGR-DRFRDDSRAF--KVGGGSRDNFKGS----SWFSLSVGS 475
           RA  G        PV+ V  R DR   D+     + G G+   F+G     +   +S G 
Sbjct: 448 RARGGDIDDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGA---FRGPGPRLARIFISAGR 504

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +     R L+  +   +G+  + I +I +    + V+V  D  +
Sbjct: 505 EAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPEDAAE 548


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 8/354 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSIQ------AIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +P + +HR GRTGRAG+ GMSV FV P  +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEI 348


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 203/365 (55%), Gaps = 9/365 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L     R     
Sbjct: 17  TLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVSRFRVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +L + PTRELA QV  E+  L      + V    GG+ +  +   L++GAHI+VGTP
Sbjct: 74  ---SLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHGAHILVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D++P +R+ L+FSAT    
Sbjct: 131 GRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLLFSATFPEQ 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFC 251
           I T+A    ++   V + S   Q S I+ R   L +  +RDNA+  +L  H  ++ +VFC
Sbjct: 191 IETIASKVMQNPEMVKVES-THQKSTIEQRFYQLESTEERDNALEALLLTHRPESTVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVAARG+D+ 
Sbjct: 250 NTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVAARGLDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     + V    
Sbjct: 310 NLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMGIDVHPAK 369

Query: 372 APSVE 376
            P  E
Sbjct: 370 LPQPE 374


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 161/531 (30%), Positives = 268/531 (50%), Gaps = 47/531 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ + GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S +        
Sbjct: 60  VAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSLI-------D 112

Query: 71  PA-SAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  +P AL +APTRELA+QV    + +      V V    GG +   +   L+ GA I+
Sbjct: 113 PSVKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRRGAQII 172

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH++   L++S L+ +VLDEADEML +GF++D+E IL  +P+  ++ +FSAT
Sbjct: 173 VGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVALFSAT 232

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  +++ Y  D   V +AS+      I  R VLV   D+ +A+  IL        I
Sbjct: 233 MPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRILEVEDFDAMI 292

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+++     + L    F    ++G++ Q  R   ++ ++DGR  + +ATDVAARG+
Sbjct: 293 MFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGL 352

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R   ++ R     + 
Sbjct: 353 DVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIERATRQPLT 412

Query: 369 WEPAPSVEAIRE----RDAQRI---LQDP---LFLDSIQGDEKKMVDVLLAKHDPE--KI 416
               PSV+ + E    + AQ I   L DP   LF        +++V+   ++H      I
Sbjct: 413 EVQLPSVDDVNEMRMAKFAQSITESLDDPNIALF--------RRLVEEYASEHSVSMADI 464

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDR--------FRDDSRAFKVGGGSRDNFK 464
           AA      R      +  PE          R+R            +R F  G     + K
Sbjct: 465 AAALATQSRNSDEFLMREPER------PQRRERQDDRGGDRRDRPARNFSDGPRPSRSGK 518

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
             + + ++VG +   +   +M  L   +G++   IG I ++ D + VE+ A
Sbjct: 519 DMAQYRIAVGKRNNVKPGSIMGALANEAGLSGGDIGRISIRFDHSIVELPA 569


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/341 (39%), Positives = 186/341 (54%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L+  G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L   +L E  R  
Sbjct: 15  IVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLLQRILDEQSR-E 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + PTRELA QV  +L          +    GG     + R L++GA +VVG
Sbjct: 74  QGRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIRALKDGADVVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + LN SH+   V DEADEMLDLGF  D+E I+ + P KR+ ++FSAT+ 
Sbjct: 134 TPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAKRQTMLFSATMP 193

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNA 247
             +  LA+ Y  Q   +R   AS+    S    + V  A S D+   +  ILR  G    
Sbjct: 194 GQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVGRILRAEGRGRT 253

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ +  R T  L    FQ  AL G+L+Q  R  AL+  RDG   V +ATDVAARG
Sbjct: 254 IIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTDVLVATDVAARG 313

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ +   + +  +HR GRTGRAG  G++V +I
Sbjct: 314 IDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLI 354


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 202/359 (56%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LAK++ +   +V + +    HSD  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 EQLAKDFMRQPQQVKVEA---LHSDSQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L+LVI+ EL+ + E  +HR GRTGRAG KG+++ ++      RA+ +    N  + WE
Sbjct: 312 GLDLVINVELARDAEIHVHRVGRTGRAGEKGVAISLVAPAEGHRAQAIEDLQNKPLRWE 370


>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/383 (35%), Positives = 202/383 (52%), Gaps = 5/383 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I  AL+  GY   T +QE  +   L+  D+L  AQTG+GKT AF + +  
Sbjct: 2   LFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +E      +    AL +APTRELA+Q+    E      G+   V  GGVS H + + 
Sbjct: 62  GLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTKS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL D I  K + ++ +K  VLDEAD MLD+G   D+  I+   P  R
Sbjct: 122 LNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSAT+   I  LA    K+ V+V I   +     I+     V  S++   ++++L+
Sbjct: 182 QTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVYYVNKSNKVQLLIHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VF  T+    +  K L +   Q  A+ G  SQ  R  AL   ++ + R+ +A
Sbjct: 242 SKAIVSALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTRILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAE 357
           TD+AARGID+ +L  VI+ +L   PE  +HR GRTGRAG  G+++    Q   N+ +  +
Sbjct: 302 TDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLLKEIQ 361

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
           +L  ++   V   P P VE + E
Sbjct: 362 KLISKSVPVVEDHPFPLVETLNE 384


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 198/372 (53%), Gaps = 6/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I +AL   GY   T VQE ++   L + D+ V +QTGSGKT AFG+ +   +  E 
Sbjct: 11  ISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPICELVDWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  ++  +     +  A   G      ++ +L+   H
Sbjct: 71  NK------PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQAELKQKCH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DHI    L +  ++ +VLDEADEML++GF + +E I++  PK+R  ++FS
Sbjct: 125 VVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQRTTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K Y  D   + IAS       ID+   +VA   + + + ++       +
Sbjct: 185 ATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVTIIENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V    + L +H +    L G + Q++R+  +   + G  R  +ATDVAAR
Sbjct: 245 CIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ +L    E+ +HRSGRTGRAG+ G ++  +  N  +    +       
Sbjct: 305 GIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEIESYIGFE 364

Query: 367 VVWEPAPSVEAI 378
           +    APSV  +
Sbjct: 365 IPHRTAPSVHEV 376


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 191/352 (54%), Gaps = 9/352 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  +DV+  AQTG+GKT AF L +   +   N+     
Sbjct: 14  KAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPILEKIDKSNENVQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++PTRELA+Q   E+  L       V V  GG  + R+ + L+N   +VVGTP
Sbjct: 72  ----ALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIKSLKNHPQVVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHIR   L + H++ +VLDEADEML++GF DDIE I+   P++R+ ++FSAT+ P 
Sbjct: 128 GRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEERQTMLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   + KD   V I ++      ID   V     ++ + +            IVF  
Sbjct: 188 IKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFFDVQSPDLTIVFTR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    +    + G+L+Q+ R+  +   R G+  + +ATDVAARGID+ D
Sbjct: 248 TKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILVATDVAARGIDIND 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFR 361
           +  V + ++  +P++ +HR GRTGRAG+ G+S+ FV P  M   R  E+L +
Sbjct: 308 VTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREIEKLTK 359


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 12/413 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN      
Sbjct: 17  KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    I+VGTP
Sbjct: 71  PAIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FSAT+ P 
Sbjct: 131 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 191 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAARG+D+  
Sbjct: 251 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M      E+L R   + +  
Sbjct: 311 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 368

Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +P    EA R + A      D L  D       +    LL K+D  ++ A  L
Sbjct: 369 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 421


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 201/359 (55%), Gaps = 13/359 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+  ++   L  +G VN T VQ A +      +D +V AQTG+GKT+AF L +
Sbjct: 2   LTTFESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117
              +  E           AL I PTRELA+Q+  E   L  A  G+ V    GG  V R+
Sbjct: 62  LEKIRPERPEAQ------ALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQ 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+NGA +V+GTPGRL DH+R   L +  ++ +VLDEAD+ML +GF  ++E IL   P
Sbjct: 116 LRKLKNGAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAI 235
           + R+ ++FSAT+   +  LAK Y      + IA  +R   D   R +LV  +DR   +A+
Sbjct: 176 RSRQTMLFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLD-SIRQILVECTDRTKQSAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +R      A++FC T+   S   + L    FQ   L G+LSQ +R   ++  R  + 
Sbjct: 235 IESIRSQRPYLAVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKL 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            + +ATDVAARGID+  +  V + ++  + ++ +HR GRTGRAG KG++V F  P++M+
Sbjct: 295 ELLVATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDME 353


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 199/369 (53%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I +AL+  GY N T +QE  +   L+ KD+L  AQTG+GKT AFG+ +   +   N
Sbjct: 8   IAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPILHHIYTNN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+Q+G         TG+   V  GGV   ++   L+ G  
Sbjct: 68  SGIGKRKIK-ALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDALRQGVE 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +    +++  L+ VVLDEAD+MLD+GF  D++ I+   P KR+ L FS
Sbjct: 127 ILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAKRQSLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L++    +  +V I  E      ++     V   D+   +V+++    AK 
Sbjct: 187 ATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHLIETKEAKA 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K+L +      A+ G  SQ  R NAL   +DG+  V +ATD+AAR
Sbjct: 247 VLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL LV++ +L + PE  +HR GRTGRA   G+++     +   R ER + +    
Sbjct: 307 GIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVAL-----SFCDREERAYLKDIQK 361

Query: 367 VVWEPAPSV 375
           ++ +  P+V
Sbjct: 362 LIKQTIPTV 370


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/358 (37%), Positives = 197/358 (55%), Gaps = 12/358 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +           A
Sbjct: 4   LNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ------VA 57

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGTP
Sbjct: 58  TQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGAQLDSLVHAPHIVVGTP 116

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R K L +  +K +VLDEAD MLD+GF DDI+ ++  +P +R+ L+FSAT    
Sbjct: 117 GRIQEHLRKKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSATYPAG 176

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  + V +  +    + I  R        R   +V  +R+    + +VFC+
Sbjct: 177 IERISDRVQRAPLSVEV-DDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSCVVFCN 235

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ D
Sbjct: 236 TKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKD 295

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
           LELV++ ELS +PE  +HR GRTGRAG  G+++    PQ M  RA  L    +  + W
Sbjct: 296 LELVVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMT-RAHALEEYLDCKLQW 352


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 214/361 (59%), Gaps = 20/361 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64
           N+ + +  A+  +G+   T +Q  ++   L E  +++  A+TGSGKT +F + L   L+ 
Sbjct: 7   NLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPLIE-LID 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E+      S   A+ + PTRELA+QV  E++ L     + +    GG ++H + + L+  
Sbjct: 66  ED------SGIEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQIKALKK- 118

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF +D+E IL++  K +R+L+
Sbjct: 119 ANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNKNKRILL 178

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           FSAT+   I  LAK Y  D   V    + + +++I+   + +  ++R   +  IL+   +
Sbjct: 179 FSATMPKEILNLAKKYMGDYEFV----KAKINANIEQSYIEINENERFETLCRILKDREF 234

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VFC T+        +L +  F+  A+ G+L+Q +R   +++ +  + ++ IAT
Sbjct: 235 YG----LVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKIKILIAT 290

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KGM++ +I +   R+ + + R
Sbjct: 291 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYRKLKHIER 350

Query: 362 E 362
           +
Sbjct: 351 K 351


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG+KG ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIETYIGFAIPKAQAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 30  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 85  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 144 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 204 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 264 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 324 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 377


>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
 gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
          Length = 571

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 212/379 (55%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEA---ILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           N+   I +A+ E G+ + T +Q+     ++ D+R  D++  AQTG+GKT AF L +    
Sbjct: 8   NLSPEILKAIGELGFESPTEIQKQTIPFISTDIR--DLIALAQTGTGKTAAFSLPIL--- 62

Query: 63  LAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
               D     S  +  L + PTREL +Q+ ++++  Y+K    +      GG S+  + R
Sbjct: 63  ----DMIDDGSRKIQFLVLCPTRELCLQITKDIKN-YSKYMNNIKTTAVYGGSSITDQIR 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGR+ D I  K L+ S ++ +VLDEADEML +GF+DD+E IL  +P+ 
Sbjct: 118 SLRDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPET 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT++  +  ++K+Y     R+++ S N    +I +   +V    +  A+  ++
Sbjct: 178 KHTYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALKRLI 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +I+FC TR         L ++ +   AL G+LSQ +R   ++  R     + +
Sbjct: 238 DANPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+ +++
Sbjct: 298 ATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQI 357

Query: 360 FREANVSVVWEPAPSVEAI 378
                + +V +  P+ +AI
Sbjct: 358 KMSTKIDIVEKKVPTGDAI 376


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 186/340 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVLQNIAQN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAI 346


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 189/339 (55%), Gaps = 6/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L L   L +   +   A
Sbjct: 15  QAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDKLQSGRAK---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL IAPTRELA QV    E     T +  A+ IGGVS   + + L  G  +++ TP
Sbjct: 72  RMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQEKKLDRGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P K++ L FSAT+ P 
Sbjct: 132 GRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTLFFSATMPPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           IT L K + +D VR+ +A     +++I    V V  SD   +  A+  ++     +  IV
Sbjct: 192 ITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIEKAQIETGIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  V    K L  H +    + G+L Q +R   L   R G  ++ +A+DVAARG+D
Sbjct: 252 FCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVASDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  V + ++  + ++ +HR GRTGRAGR G++  ++
Sbjct: 312 IPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLV 350


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 40  ALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 94

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 95  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 154 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 213

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 214 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 273

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 274 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 333

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 334 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 387


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 206/377 (54%), Gaps = 9/377 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   T +Q   +   +   D+L +AQTG+GKT AF L + + + A 
Sbjct: 13  NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
           N      S    L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  N------SNTQLLVLAPTRELAIQVAEAFQ-VYASFSRKLNVLPIYGGSSYDNQIRQLRR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DHI+   L + +LK +VLDEADEML +GF DD+E+IL  +P +R+  
Sbjct: 126 GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K Y  D  +V I S+    S I  R   VA   +  A+  I+    
Sbjct: 186 LFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +    ++ L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV
Sbjct: 246 FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + R  
Sbjct: 306 VARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERAT 365

Query: 364 NVSVVWEPAPSVEAIRE 380
             S+   P PS+  + E
Sbjct: 366 RQSIDPMPIPSISQLNE 382


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 262/518 (50%), Gaps = 37/518 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ GY   + +Q A + P +  +DV+  AQTG+GKT AF + + S L    D   P  
Sbjct: 31  AVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILSRLEGAGDGSGP-R 89

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P AL +APTRELA+QV        A    V  + I GG S   +   L+ GA ++VGTP
Sbjct: 90  KPQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLAGLRRGAQVIVGTP 149

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L+IS L+ +VLDEADEML +GF +D+E IL  +P  +++ +FSAT+  A
Sbjct: 150 GRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDDKQVALFSATMPSA 209

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y  D   + + S+     +I  R + V+   + +A+   L        IVF  
Sbjct: 210 IRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRKLDALTRFLEVETFDAMIVFVR 269

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    F  VA++G+++Q +R   +  ++ G   + +ATDVAARG+D+  
Sbjct: 270 TKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILVATDVAARGLDVDR 329

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEP 371
           +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  +R   R    A  S + E 
Sbjct: 330 ISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPR--ERHLLRSIERATRSTLTEI 387

Query: 372 A-PSVEAIRERDAQRILQDPLFLDSI----QGDEKKMVDVLLAKHDPEK-------IAAG 419
             PSVE +   +AQR+ +   F DSI      D   M   L+  +  +         AA 
Sbjct: 388 GLPSVEDV---NAQRVAR---FADSITENLSSDNLDMFRQLIENYARDNDVAMADIAAAL 441

Query: 420 FLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            L     G L AP+   P       DR     RA +  GGS       + + ++VG K K
Sbjct: 442 ALETRDGGFLMAPDP--PEG-----DRPPRRERAPRRAGGS------FATYRIAVGRKHK 488

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                ++  +    G+ R   G I ++ D + VE+  D
Sbjct: 489 VSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDD 526


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 199/348 (57%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +  +
Sbjct: 29  NLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTD 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 89  ENIIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P +R+ L+F
Sbjct: 143 HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQTLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++     +
Sbjct: 203 SATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +ATDVAA
Sbjct: 263 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 323 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEM 370


>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 628

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 215/399 (53%), Gaps = 12/399 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+SE G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L    L   D  S  +   A+ ++PTREL +Q+  +L ++      + +A   GG S+ 
Sbjct: 60  PL----LQRIDTGSKDTQ--AVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++G  I+V TPGRL D +      +  +  VVLDEADEML++GF++ I  IL  
Sbjct: 114 TQIHQLRHGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A+
Sbjct: 174 VPEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R    
Sbjct: 234 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 294 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
              + RE     V    P+ E I ++   + + D L  D
Sbjct: 354 VRNIEREIGKEFVDGTLPAPEEICKKQLFKTMDDILKTD 392


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIK-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASRGLDISG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V    L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 201/351 (57%), Gaps = 8/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           NI   I +AL + GY   T VQ A++ P+L+ E+DV+V A+TGSGKT AF + L  +++ 
Sbjct: 7   NIDGRIQDALEKLGYSEATEVQSAVI-PELKQERDVIVKAKTGSGKTAAFAIPLLDSVVW 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E ++      P  L + PTRELA+QV  + + +     +      G      + +DL+  
Sbjct: 66  EENK------PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQDLKQK 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VV TPGR+ DH++    + SHLK +VLDEADEML++GF + +E I++  P KR   +
Sbjct: 120 THVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVKRTTCL 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA  + K+ V+VNI      +  I+  A  V   ++   ++ ++ +   
Sbjct: 180 FSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSYEKAGFLLKLIVHEKP 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V+    +L ++   V  + G + Q +R   +   R G+ +  +ATDVA
Sbjct: 240 SSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQFLVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ARGID+ ++  VI+ +L    +N +HR GRT R G+ G+++ ++ ++  +R
Sbjct: 300 ARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKR 350


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 209/389 (53%), Gaps = 19/389 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L + + L    
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241
           AT+ P I  LA  + ++  RV +A   R  + I     LVA   +D     +LR      
Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVA--RRSSTAITVTQRLVAAHGKDYEKRAVLRELIRSQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  ++ +A+
Sbjct: 244 EDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++ +   + A+ + +
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKFADAIEK 363

Query: 362 EANVSVVW---------EPAPSVEAIRER 381
                V W         EP  S ++ R+R
Sbjct: 364 LIGQEVEWHNGDLSELPEPMESHDSRRDR 392


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 200/370 (54%), Gaps = 6/370 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +ALS   Y + T VQ  +L   L E+DV+V +QTGSGKT +FG+ L   +  E ++  
Sbjct: 15  VAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  ++  +     +  A   G     +++ +L+   HIVVG
Sbjct: 73  ----PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L +  ++ +V+DEADEML++GF D +E I+   P +R  ++FSAT+ 
Sbjct: 129 TPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++ Y K  V V I +     S ID+  + V    +   + ++       + I+F
Sbjct: 189 EDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTTVENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+     L +  +    + G + Q++R   +   + G+ R  +ATDVAARGID+
Sbjct: 249 CRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ +L    E+ +HR+GRTGRAG+KG ++  +    +R    +      S+   
Sbjct: 309 DNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIEEYIGFSIPTS 368

Query: 371 PAPSVEAIRE 380
             PS E +++
Sbjct: 369 APPSKEEVQQ 378


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIATLEAE 381


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/433 (30%), Positives = 234/433 (54%), Gaps = 16/433 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AI+F  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     V    A
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDA 368

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           P+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L++    +
Sbjct: 369 PTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----M 422

Query: 429 CAPEEITPVSLVS 441
               + TP++L S
Sbjct: 423 TKEPDTTPIALTS 435


>gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 459

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 201/377 (53%), Gaps = 12/377 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T VQ   L   L+  DV+  A TGSGKT AFGL L   L   N R+    A
Sbjct: 19  LNTLGYATMTPVQAQSLPFVLKGHDVIAQASTGSGKTAAFGLGLLHPL---NPRYYGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  E+  L    G + V    GG  +  +   L++GA IVVGTPG
Sbjct: 76  ---LVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGSLEHGAQIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L++  L  +VLDEAD MLD+GF D I  ++  +P +R+ L+FSAT    I
Sbjct: 133 RVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRRQTLLFSATYPAGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ +  +   V + + +  +S I+ R   V  ++R+ A+   +      + +VFC T
Sbjct: 193 KQLAETFMNNPQHVEVEALH-DNSQIEQRYYEVDPAEREEAVARAIACFRPVSCVVFCVT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       + L+ +L Q+ER   L +  +    V +ATDVAARG+D+ +L
Sbjct: 252 KKQCQDVVNQLCRQGMSAMVLNSDLEQRERDEVLTLFANRSLSVLVATDVAARGLDIDNL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+AELS  P+  +HR GRTGRAG KG+++ ++     RRA  +       + W P  
Sbjct: 312 DMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAMAIEELQGAPLNWHPVS 371

Query: 374 SVEAIRERDAQRILQDP 390
           S++  RE D    LQ P
Sbjct: 372 SLKP-REGDT---LQPP 384


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 196/345 (56%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+  GY   T++Q+ ++ P L  K+++  A TGSGKT AF + +   +  E +   
Sbjct: 14  ILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEEN--- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + P RELAVQV +E+  +  K  + V    GG  + ++ R L+  +HIV G
Sbjct: 71  ---APQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSHIVAG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL   P   R+ +FSAT+ 
Sbjct: 128 TPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEVKQILSLVPADCRISLFSATLK 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA  +  +AV V   +   Q S I  +    +   + +  ++IL     ++ ++F
Sbjct: 188 PEIRELADGFIPEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMDENPQSCMIF 247

Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           C TR   +  F K+  + +F    L G++ Q+ER   +   R G  R  IATDVAARGID
Sbjct: 248 CGTREMTNVLFQKLRRKRIF-CGMLHGDMEQRERLKTVDAFRRGGFRFLIATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             ++  V++ +  +  E  +HR GRTGR G  G +V ++ +N QR
Sbjct: 307 FEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQR 351


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 2/344 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   N   SP
Sbjct: 31  QSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 90

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++  L+ G  ++V 
Sbjct: 91  ARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 150

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S
Sbjct: 151 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 210

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++Y    V + +A+ N   + I   A  ++   +  A+V++++  G K  IVF
Sbjct: 211 NEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHLVKSRGLKQVIVF 270

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVAARG+D+
Sbjct: 271 SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDV 330

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R
Sbjct: 331 AGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEER 374


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 159/533 (29%), Positives = 270/533 (50%), Gaps = 41/533 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I + L E GY   + +QE  +   L+  D+L  AQTG+GKT AF L + S + L + D  
Sbjct: 16  ILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPILSKIDLKQKD-- 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P  L +APTRELA+QV    +       G+ V    GG     + R L+ G H+V
Sbjct: 74  -----PQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRALKRGVHVV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DHI+   L +  LK ++LDEADEML +GF DD+E+IL  +P  R++ +FSAT
Sbjct: 129 VGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQIALFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +A  Y +D   V I  +    S I+ +  LV+   + +A+  IL        I
Sbjct: 189 MPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFDGII 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L    +   AL+G+++Q +R   +  ++ G+  + IATDV ARG+
Sbjct: 249 IFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIATDVVARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS- 366
           D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++ FV P     R  RL R    S 
Sbjct: 309 DVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAP-----RERRLLRSIEAST 363

Query: 367 ---VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPE--KIA 417
              +     P+ + I +    R  +D + +D+ QG +    +KMV+ + + ++    +IA
Sbjct: 364 KKKITQMELPTAQEINDSRITR-FKDKI-VDAAQGTDLDFYQKMVESIESDNNIPAIEIA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVS------GRDRFRDDSRAFKVGGGSRDN--------F 463
           AG  ++ +  +    +  PV          GR+R    ++  +   G R N         
Sbjct: 422 AGLAKLLQGDVPFFLDEKPVKHKEFKERDGGRERNPRRAKGERSERGDRGNRSRRQTPPN 481

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +G + F + VG +   +   ++  +   +G++ + I  + ++ + + V++ +D
Sbjct: 482 EGMARFRVEVGRQHGVKPGNIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSD 534


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/386 (35%), Positives = 216/386 (55%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +AL + GY   + +Q A + P L  +DVL  AQTG+GKT AF L + + +   N
Sbjct: 14  LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDC-N 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            R +      AL +APTRELA+QV        A   G  V    GG S   +   L+ GA
Sbjct: 73  ARHT-----QALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEADEML +GF DD+E IL  +P +R++ +F
Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y +D   + I +     + I  R  +V+   + +A+  IL     +
Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + LA   F   AL+G++ Q  R   +Q ++DG+  + +ATDVAA
Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P  +++ R  ER  R+
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ 388
               +     PS EA+ +    R ++
Sbjct: 368 PITQMQL---PSTEAVNDSRISRFME 390


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 221/417 (52%), Gaps = 16/417 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL +   +  +N    
Sbjct: 12  ILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+ I+PTRELA Q   E+  L       V V  GG  + R+   L++   IVVG
Sbjct: 72  ------AIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQINALKSHPQIVVG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  K + + H+K +VLDEAD+MLD+GF  DIE I++ +P +R+ L+FSAT+ 
Sbjct: 126 TPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSERQTLLFSATMP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +   +  D  ++ + S+      +D   V     ++ + +  +L     K A++F
Sbjct: 186 APIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEKFDILTRVLDVQAPKLAVIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   +K L    +    + G+L+QQ R + L+  R+G+  + +ATDVAARG+D+
Sbjct: 246 GRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILVATDVAARGLDI 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367
             +  V + ++  +PE+ +HR GRTGRAG  G SV FV    M   R  E L ++  + +
Sbjct: 306 SGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDVEHLTKKRLLPM 365

Query: 368 VWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +P    EA   R A   Q I +     D  + +E+  VD LL +HD + + A  L
Sbjct: 366 --KPPTEEEAFAGRAAMAEQSIEELVQKTDVAKFEEQ--VDHLLEQHDAKTLVAALL 418


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIATLEAE 381


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   +   D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLLNKLELSQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + +D + +++A +N     ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367


>gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 608

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 199/344 (57%), Gaps = 11/344 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           + +A+S  GY   + +Q A +   L   D+L  AQTG+GKT AF L L S + L +N   
Sbjct: 18  VQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLSRIDLKKN--- 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128
               +P  L +APTRELA+QV    +   ++  G  V    GG  +  + R L+ GAH+V
Sbjct: 75  ----SPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKRGAHVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   LN+  L  +VLDEADEML +GF DD+E+IL+ +P KR++ +FSAT
Sbjct: 131 VGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVALFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNA 247
           +   I  +A  Y  D   V IA++      I+ R ++V   DR  +AI  IL        
Sbjct: 191 MPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNGFDRKLDAITRILEADDFDAM 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + +   + L    +   AL+G+++Q  R   +  ++  +  + +ATDVAARG
Sbjct: 251 IIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ID+  +  V++ ++  +PE  +HR GRTGRAGR+G ++ FV P+
Sbjct: 311 IDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPR 354


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 149/458 (32%), Positives = 239/458 (52%), Gaps = 40/458 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   Q + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N       A  AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVDVKN------GAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H+  VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----- 352
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P+ +     
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 353 -----QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKM 403
                +R+ ER+          +P    EA+     QRI  + L L+ ++ +     K+ 
Sbjct: 355 IERTTKRKMERM----------KPPTLDEAL--EGQQRIAIEKL-LNVVETENLSFYKRA 401

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
            + LL +HD   I A  L++    L    + TPV L  
Sbjct: 402 AEELLEEHDSVTIVAACLKM----LTREPDTTPVQLTE 435


>gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae]
          Length = 659

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 274/564 (48%), Gaps = 46/564 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 33  ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 88  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R  AL+ ++DGR  + IATDVAARG+
Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 385

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-H--------DPEKIAAG 419
               P+ E + +R  ++          ++  +      LLAK H        D E +AA 
Sbjct: 386 EVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIHATAEGEELDVETLAAA 443

Query: 420 FLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------------- 461
            L++ +    L  P    PV+ +  R  FRD   +F   G   D                
Sbjct: 444 LLKMAQGERSLIVP----PVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDRPKRERR 499

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
           +      + + VG     E R ++  +     I+ + IG I++    + +E+      + 
Sbjct: 500 DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 559

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541
           +    RT  L+K + ++ LG  +P
Sbjct: 560 LQHFTRTRILNKPMNMQLLGDAQP 583


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 195/342 (57%), Gaps = 20/342 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +S  GY   T +Q   +   L+ +D+L+SAQTGSGKT AF L +   L AE  +   +  
Sbjct: 18  ISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQQLAAEPTK---SKL 74

Query: 75  PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P AL + PTRELA QV        RE + LY+ T       +GG +  ++ R L+ G  I
Sbjct: 75  PRALIVIPTRELAQQVQDSVFQYSREFKELYSIT------LVGGTAYQKQIRALKKGVSI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL DH+R   L++S ++ +VLDEAD MLD+GF DD+  I+   P+ R+ +M SA
Sbjct: 129 VVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQNRQTIMSSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKN 246
           T    +  +A  +  +A ++ IA E     +I Y           NA+++ +L       
Sbjct: 189 TWDGNVGKIAAGFTHNAEKIIIAPETSHIEEISY---FTDDQAHKNAVLDRLLADEAVTQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+++       L E+ FQ   L G+L QQ+R+  ++  R+G+  V +ATD+AAR
Sbjct: 246 CIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+P +  VI+ +L    E+ +HR GR+GRAGR G+++ ++
Sbjct: 306 GIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLV 347


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 197/343 (57%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +++   
Sbjct: 15  IVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    IVVG
Sbjct: 75  ------ALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FSAT+ 
Sbjct: 129 TPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  + + +      + I ++      I+   V V   ++ + +  +L     + AIVF
Sbjct: 189 DPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+
Sbjct: 249 GRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M
Sbjct: 309 SGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREM 351


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 198/348 (56%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   + +   
Sbjct: 7   NLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 67  DNTIQ------ALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALKSGA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGRL D I+ K L + H++ ++LDEADE L++GF +DIE I+   P  R+ L+F
Sbjct: 121 HVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDDRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++     +
Sbjct: 181 SATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVQQPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +ATDVAA
Sbjct: 241 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+ FV P  M
Sbjct: 301 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEM 348


>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 468

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 142/398 (35%), Positives = 214/398 (53%), Gaps = 31/398 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           +AL+E GY   T VQ   +   +  +D++VS+QTGSGKT AF L        ++++  P 
Sbjct: 14  KALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFAVQSEQQQPE 73

Query: 72  ----------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
                                 A+ P  L + PTRELA+QV    +   A    V AV I
Sbjct: 74  GGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDKYGAFMKRVKAVSI 133

Query: 110 -GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+GF DD
Sbjct: 134 LGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLDEADRMLDMGFIDD 193

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227
           IE I+ ++P+ R+ ++FSAT+   + T+AK   KD + + IA    +H +I      V  
Sbjct: 194 IEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATKHENIKQGVHFVDD 253

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           LS ++  + ++LR      A+VF +T+         L    F   AL G++ Q  R+  L
Sbjct: 254 LSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGARNRTL 313

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+P +  V + +L   PE+ +HR GRTGRAGR G++V +
Sbjct: 314 DGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRTGRAGRNGIAVSL 373

Query: 348 I--PQNMQ-RRAERLFRE-ANVSVV--WEPAPSVEAIR 379
           +   + M  +R ER  ++   VSV+  +EP  +  A R
Sbjct: 374 VNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPR 411


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 196/351 (55%), Gaps = 12/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA 
Sbjct: 8   NLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLAR 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G 
Sbjct: 67  GR--ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L F
Sbjct: 125 DVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNI 238
           SAT++P I  +   +     R+ +A +      I+   VL   S +D        A+  +
Sbjct: 185 SATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEKRTALRAL 244

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +   G K  N I+FC+ ++ V    K L ++ F    + G+L Q +R+  L   R+G+ R
Sbjct: 245 INAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFREGKLR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ +
Sbjct: 305 ILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITI 355


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 202/354 (57%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L     +     
Sbjct: 20  ALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 VKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ R +
Sbjct: 314 ITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRSS 367


>gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
 gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
          Length = 382

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/354 (37%), Positives = 197/354 (55%), Gaps = 14/354 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A+ E G+     VQEA++ P L     DV+  AQTG+GKT A+G+
Sbjct: 1   MKTFEELGVSEEIRHAIEELGFEQPMPVQEAVI-PYLLGNGNDVIALAQTGTGKTAAYGI 59

Query: 57  ALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSV 114
            +         +  P      AL ++PTREL +Q+  +L ++     G+ VA   GG S+
Sbjct: 60  PVLQ-------KVDPTKKETQALILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA I+V TPGRL D ++     + ++  VVLDEADEML++GF + I  I +
Sbjct: 113 EMQSRQLRKGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFE 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P +R  L+FSAT+S  I  +AK+Y  D   + + S N     +++   +V   D+  A
Sbjct: 173 GIPSERNTLLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+ Y+ +  AI+FC T+         L    +   AL G+LSQQ+R   +Q  R   
Sbjct: 233 LKRIVDYYPSIFAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I
Sbjct: 293 VQFLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISII 346


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/376 (34%), Positives = 206/376 (54%), Gaps = 13/376 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+   T +Q   +   +  +DVL  AQTG+GKT AFG+ L        ++     
Sbjct: 16  ALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPLI-------EKVKGRE 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              +L +APTRELAVQV  +L+      G+ V    GG+ + R+ R+L+    IVVGTPG
Sbjct: 69  GIQSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQIRELKKKPQIVVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           R+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  PK+ R+ ++FSAT+  A
Sbjct: 129 RVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKENRQTMLFSATMPKA 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L + + K+ V V   + N     I+    +V   ++ +   N L  H  + AIVF  
Sbjct: 189 IQELVQKFMKNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTNFLDVHRPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+  
Sbjct: 249 TKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++  + E+  HR GRTGRAG+ GM++ FV P  M   R+ E+  +   +  + 
Sbjct: 309 VTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKA-KNRQMQALR 367

Query: 370 EPAP-SVEAIRERDAQ 384
            P P  V   RE+D +
Sbjct: 368 PPTPGEVMKAREQDVK 383


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/356 (38%), Positives = 193/356 (54%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY   T VQ   +   L  KDV+  AQTGSGKT AFG+ +   +     R      
Sbjct: 17  LDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPIIEAIDPRCFRVQ---- 72

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             +L + PTRELA QV + L E   AK  V V    GGV +  +   L +GAHIVVGTPG
Sbjct: 73  --SLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQIGSLSHGAHIVVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   L++  LK +VLDEAD MLD+GF + +  I+  SP  R+ L+FSAT  PAI
Sbjct: 131 RVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSPGGRQTLLFSATWPPAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ +Q     V + S+    + I+     +    R  A+  +L      +++VFC+T
Sbjct: 191 RKLSEQFQSKPEDVRVESKAATIT-IEESFYEIQPDQRAAAVAALLSRFQPVSSLVFCTT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      +  L    F  ++L G+L Q+ER +AL    +    V +ATDVAARG+D+  L
Sbjct: 250 KRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTVLVATDVAARGLDIKGL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
            LVI+AE + +PE   HR GRTGRAG +G +V +       +  RL  E    V+W
Sbjct: 310 PLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKITRLEAERGEPVLW 365


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 8/358 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S L A   RF     
Sbjct: 22  LEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +    V +  E    S I  R   V  ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRSPKEVKL-EERHDDSKIRQRFYEVTETERLHAVGMLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIEQAQKRDVEWRP 372


>gi|332006183|gb|AED93566.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 655

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 216/395 (54%), Gaps = 15/395 (3%)

Query: 29  AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS----PASAPLALAIAPTR 84
           A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E   ++        P  L +APTR
Sbjct: 38  AVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTR 97

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV +E++        +  VC+ GGVS   ++  L  G  +VVGTPGR+ D I G+ 
Sbjct: 98  ELAKQVEKEIK---ESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRS 154

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+ ++FSAT+   +  LA+ Y  +
Sbjct: 155 LKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDN 214

Query: 204 AVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRF 260
            + +++  +  +     I   A+    + +   + +++  Y      IVF  T+      
Sbjct: 215 PLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEV 274

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           +  L+  +    AL G++SQ +R   L   R G+  V +ATDVA+RG+D+P+++LVIH E
Sbjct: 275 SLALSNSI-ATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYE 333

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           L ++PE  +HRSGRTGRAG++G ++ +   + +R    L R+      +   P+V  + E
Sbjct: 334 LPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLE 393

Query: 381 RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
             A +++     L+ +  D  K       K   EK
Sbjct: 394 SSADQVVAT---LNGVHPDSIKFFSATAQKLYEEK 425


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 218/407 (53%), Gaps = 10/407 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ D       P  L
Sbjct: 2   GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQML 55

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA+QV    E       GV V    GG     + R L+ G+ +VVGTPGR+ D
Sbjct: 56  VMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILD 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  + 
Sbjct: 116 HIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRIT 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + +D   V I +  R   DI     LV    +++A++  L       AI+F  T+   
Sbjct: 176 RRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGT 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV+
Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPS 374
           + ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++    V       
Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEI 355

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + A R    +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 356 LMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 402


>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 624

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 168/564 (29%), Positives = 266/564 (47%), Gaps = 48/564 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + + A+     
Sbjct: 17  ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     E+     GV V    GG     + R L+ G  +VV
Sbjct: 72  -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQVVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I S      DI      V    ++ A++  L       AI+
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERIMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  M   LL K  P      E +AA 
Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLGKLQPQEELDIETLAAA 424

Query: 420 FLRI---HRAGLCAPEEITPVSLVSG--------------RDRF-RDDSRAFKVGGGSRD 461
            L++    R  +  P+ +                       DR  R D R  +     R 
Sbjct: 425 LLKMAQGERPLILPPDPVVERRPRREFRDRDERFERRGERNDRAPRGDDRPAR---RERR 481

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + + VG     E R ++  +     I+ + IG I++    + +E+      D 
Sbjct: 482 EVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGDL 541

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541
           +    RT  L+K + ++ +G  +P
Sbjct: 542 LSHFTRTRILNKPMNMQLMGEAQP 565


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score =  218 bits (554), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 241/443 (54%), Gaps = 32/443 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL + + +  +N+     
Sbjct: 17  KSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIINKIDQKNNNIQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL IAPTRELA+QV  EL  L Y K   V+AV  GG  + R+ R L+    I+VGT
Sbjct: 75  ----ALIIAPTRELAIQVSEELYKLSYDKHARVLAVY-GGSDISRQIRSLKKNPQIIVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  + L + +++ +VLDEADEML++GF DDIE IL S P +R+ L+FSAT+  
Sbjct: 130 PGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTLLFSATMPD 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +      V I ++      I+   V V   ++ + +  +L     + AI+F 
Sbjct: 190 PIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIFG 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAARG+D+ 
Sbjct: 250 RTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAARGLDIS 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERLF 360
            +  V + ++  +PE+ +HR GRTGRAG++GM++ FV P+ M          ++R E L 
Sbjct: 310 GVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKRMEPL- 368

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                   W+ A + +    R AQ  +++ +  +++  D       LL K+D   IAA  
Sbjct: 369 ----KPPTWDEAFAGQL---RVAQEKIEEAITQENL-ADYAVFAGQLLEKYDATDIAAAM 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
           L++    +    + TPV +   R
Sbjct: 421 LKM----IAKEPDKTPVHITEER 439


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 133/376 (35%), Positives = 207/376 (55%), Gaps = 24/376 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ +         R +P   
Sbjct: 21  LDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQ-------RLNPTWF 73

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  AL I PTRELA QV  EL  L  +A    ++ +C GG  +  +   L++GAHI+VGT
Sbjct: 74  AIQALVICPTRELADQVSNELRRLARFADNTKILTLC-GGAPMRPQIASLEHGAHIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI    +++S ++ +VLDEAD M+D+GF ++I  I+ + P +R+ L+FSAT   
Sbjct: 133 PGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQTLLFSATYPD 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            I   +  + +D   + + +   QH D  I+ R   V   DR++A+  +L  +   +A+ 
Sbjct: 193 DIRKSSAPFLRDPTEITVEA---QHDDNRIEQRFYEVGYDDRNDAVGRLLNNYKPASALA 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+         L    F  +AL GEL Q+ER   L +  +G   V +ATDVAARG+D
Sbjct: 250 FCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  LE+VI+ ++S + E  +HR GRTGR   +G+++ +   N ++  + +    +  V W
Sbjct: 310 IQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLIEDYQHGPVSW 369

Query: 370 --------EPAPSVEA 377
                    P P++EA
Sbjct: 370 FDLADLEVAPGPALEA 385


>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 640

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 225/422 (53%), Gaps = 25/422 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   + A         
Sbjct: 21  ALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNIDAS------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  +VVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   V I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVWEP 371
           + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++    
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPEVE 373

Query: 372 APSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFL 421
            P+ E + ER     A ++ Q    L+S   D+ +    LLAK  P      E +AA  L
Sbjct: 374 IPTAEVLGERRLAKFAAKVQQQ---LESSDLDQYR---ALLAKLQPAEELDVETLAAALL 427

Query: 422 RI 423
           ++
Sbjct: 428 KM 429


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
 gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
          Length = 457

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 206/377 (54%), Gaps = 9/377 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   T +Q   +   +   D+L +AQTG+GKT AF L + + + A 
Sbjct: 13  NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
           N      S    L +APTRELA+QV    + +YA     + V    GG S   + R L+ 
Sbjct: 73  N------SNTQLLVLAPTRELAIQVAEAFQ-VYASFSRKLNVLPIYGGSSYDNQIRQLRR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DHI+   L + +LK +VLDEADEML +GF DD+E+IL  +P +R+  
Sbjct: 126 GAQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTA 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  + K Y  D  +V I S+    S I  R   VA   +  A+  I+    
Sbjct: 186 LFSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +    ++ L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV
Sbjct: 246 FDAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + R  
Sbjct: 306 VARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERAT 365

Query: 364 NVSVVWEPAPSVEAIRE 380
             S+   P PS+  + E
Sbjct: 366 RQSIDPMPIPSISQLNE 382


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 198/357 (55%), Gaps = 8/357 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+AL   L   N R+    A
Sbjct: 19  LEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDPL---NPRYFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A   + +    GGVS+  +   L++GAH++VGTPG
Sbjct: 76  ---LVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAHVIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H++   L +  L  +VLDEAD MLD+GF D I  I+  +P KR+ L+FSAT   +I
Sbjct: 133 RVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTLLFSATYPASI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA ++ +   +V + S +   S I+ R   +    R +A+  +L     ++ + FC T
Sbjct: 193 EQLAASFMRAPQQVRVESLHTD-SQIEQRFYEIDPEQRLDAVARLLASFRPESCVAFCFT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L        AL+G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 252 KQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARGLDIDAL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           ++VI+ EL+ +PE  +HR GRTGRAG +G++  ++      RA+ + +     + W 
Sbjct: 312 DMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSPLNWH 368


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 202/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 35  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 92  ----ALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 148 GRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 207

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     + +IVF  
Sbjct: 208 IKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPEKSIVFTR 267

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L    ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 268 TKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 327

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 328 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 387

Query: 373 PSV 375
           P++
Sbjct: 388 PTI 390


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 140/407 (34%), Positives = 218/407 (53%), Gaps = 10/407 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ D       P  L
Sbjct: 2   GFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQML 55

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA+QV    E       GV V    GG     + R L+ G+ +VVGTPGR+ D
Sbjct: 56  VMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILD 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  + 
Sbjct: 116 HIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRIT 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + +D   V I +  R   DI     LV    +++A++  L       AI+F  T+   
Sbjct: 176 RRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGT 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV+
Sbjct: 236 IDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVV 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPS 374
           + ++  + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++    V       
Sbjct: 296 NFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEI 355

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + A R    +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 356 LMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 402


>gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
           denticola F0402]
          Length = 570

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 165/574 (28%), Positives = 268/574 (46%), Gaps = 31/574 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           ++ +A+  +G+   T +Q  +  P L   E +V+  A+TG+GKT AFGL L   L +   
Sbjct: 13  IVLQAVEAKGFEEPTPIQ-VLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSNTG 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +        AL + PTRELAVQV  ELE    +    +A   GG ++  + R L+ G  I
Sbjct: 72  KVR------ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGVEI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+    L I  ++  +LDEADEML++GF +DIE I   +  + R+LMFSA
Sbjct: 126 VVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I ++A ++  D   V    +  + S  +    +V   D+  A+V ++        
Sbjct: 186 TMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNFYG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+       K L E  ++  AL G++ Q +R   L+  R  + R+ +ATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +  V++  +  +     HR GRTGRAG  G++V  +  N  +R E L + A   +
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARGEL 365

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGF 420
                PS+E + E    RIL++       +  E+K         + L    D + + +  
Sbjct: 366 KEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLSFI 425

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L++      +P     +  V      R + RA       R + + S    + VG K    
Sbjct: 426 LQMQYGSFLSPAHYKTIKPV------RSEGRA-------RKSDEDSLRLYIGVGRKDGIT 472

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG--G 538
            R L  ML R   I  + +  I V    +   +  +  +   R  K  +G+   ++    
Sbjct: 473 KRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDVKS 532

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           E P   G    G + +  ++G  ++ +    ASK
Sbjct: 533 EAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 207/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +   S I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDALPS-IEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 233/444 (52%), Gaps = 38/444 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +   +  +N    
Sbjct: 13  VMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVDVKNGVIQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA+QV  EL  + A   V V    GG  + R+ R L+   H++VG
Sbjct: 73  ------ALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L + H++ VVLDEADEML++GF +DIE IL   P +R+ L+FSAT+ 
Sbjct: 127 TPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPTERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A+ +  D   V + ++     +I    + V    + + +  +L     + AIVF
Sbjct: 187 DPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    + L    +    + G+LSQ +R + L+  ++G   + +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM----------QRRAERL 359
             +  V + ++  +PE+ +HR GRTGRAG+ G+++ FV P+ +          +R+ ER+
Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMERM 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
                     +P    EA+     QRI  + L L+  + +     K+  + LL +HD   
Sbjct: 367 ----------KPPTLNEAL--EGQQRIAIEKL-LNVAEAENLSFYKRAAEELLEEHDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSL 439
           I A  L++    L    + TPV L
Sbjct: 414 IVAACLKM----LTREPDTTPVKL 433


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
          Length = 643

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 174/564 (30%), Positives = 274/564 (48%), Gaps = 46/564 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R  AL+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-H--------DPEKIAAG 419
               P+ E + +R  ++          ++  +      LLAK H        D E +AA 
Sbjct: 370 EVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIHATAEGEELDVETLAAA 427

Query: 420 FLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------------- 461
            L++ +    L  P    PV+ +  R  FRD   +F   G   D                
Sbjct: 428 LLKMAQGERSLIVP----PVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDRPKRERR 483

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
           +      + + VG     E R ++  +     I+ + IG I++    + +E+      + 
Sbjct: 484 DVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 543

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKP 541
           +    RT  L+K + ++ LG  +P
Sbjct: 544 LQHFTRTRILNKPMNMQLLGDAQP 567


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/332 (39%), Positives = 191/332 (57%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S L A   RF     
Sbjct: 22  LTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSRLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAH+VVGTPG
Sbjct: 78  --AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHVVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +A E    S I  R   V  ++R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTDTERLHAVGQLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           E VI+ +++ +PE  +HR GRTGRA ++G ++
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 346


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 203/350 (58%), Gaps = 4/350 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AEN 66
           P V+ +A++  GY   T +Q   +   +   DV+ +AQTG+GKT  F L + + L+ + +
Sbjct: 27  PDVL-KAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIINVLMPSAS 85

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL IAPTRELA Q+   ++     T +  A   GGV +  +   L+ G 
Sbjct: 86  HSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQTNALRAGV 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  DI+ I++    +R+ LMF
Sbjct: 146 EILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNPRRQNLMF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT S  I  LAK +  +   + +A  N    +++     V   D + +A+  ++R  G 
Sbjct: 206 SATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAVGALIRERGI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF +T+    R  + L +  F   A+ G+ SQQER   L   + G  +V +ATDVA
Sbjct: 266 EQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIKVLVATDVA 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARG+D+ +L  VI+ +L  +PE+ +HR GRTGRAG  GM++ ++  + Q+
Sbjct: 326 ARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQK 375


>gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
 gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
          Length = 613

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 223/423 (52%), Gaps = 30/423 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I +A+ E+G+     VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVSEDIRKAIEEQGFEYPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +       +      A+ ++PTREL +Q+  +L ++      + +A   GG S+ 
Sbjct: 60  PLLQRI------DTSRKETQAIVLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            + ++L+ G  I+V TPGRL D + RGK   + ++  +VLDEADEML++GF+D I  IL 
Sbjct: 114 AQIKELKRGVQIIVATPGRLIDLMHRGKA-KLENVCNIVLDEADEMLNMGFQDSITEILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A
Sbjct: 173 GVPEDRNTLLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R   
Sbjct: 233 LKRLVDFYPKIYAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHL 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ +L  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + 
Sbjct: 293 TQILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKY 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +   + R      V    PS        A+ I +  LF        K M D+L    D E
Sbjct: 353 KVRNIERVIGKEFVDGTLPS--------AEEICKKQLF--------KTMSDILKTDVDEE 396

Query: 415 KIA 417
           +IA
Sbjct: 397 QIA 399


>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 542

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 258/511 (50%), Gaps = 18/511 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I +AL + G    T +Q+ ++   L+  KD++  AQTG+GKT AFGL +   +  E  RF
Sbjct: 14  IIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGLPIIQKINLEF-RF 72

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                P AL + PTREL +Q+ R+L        ++  + + GGVS+  +   LQ   HI+
Sbjct: 73  -----PQALILCPTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIENQILSLQKRTHII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D I  K L++S +K +VLDEADEML++GF+++++ I+   PKKR+ L+FSAT
Sbjct: 128 VGTPGRIIDLIERKKLHLSDIKYLVLDEADEMLNMGFKEELDSIIIKLPKKRQSLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  +A +Y  D + +     N    D+ +   +V+  ++  A+  I+  +     I
Sbjct: 188 MSKYMNGIAHDYLIDPIEIITGKRNFASDDVRHIYYIVSNQNKYLALKRIVDINPDIYGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC TR       + L +  +   AL G+LSQ +R + +   R+   +  +ATD+AARGI
Sbjct: 248 IFCKTRKETREIAESLIQDGYNADALYGDLSQSQRESVMNRFRNRILQFLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+  VI+  +    E  +HRSGRTGRAG  G+SV +I     R      ++   S  
Sbjct: 308 DVNDVTHVINYNIPDESEIYVHRSGRTGRAGNTGISVCIIHSRETRNLREFEKKIGKSFE 367

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKHDPEKIAAGFLR 422
               PS E + E+     ++    +  I  DE+ M   L      L   D E++   F  
Sbjct: 368 RIMIPSGEEVCEKKLFHFIEK---VKKIVVDEQSMKTFLPEIQKRLEVFDREELIKRFSW 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           I      +  +    +L +    ++ +  A K     R   +  S   L++G K      
Sbjct: 425 IEFNRFFSYYK-NSKNLNNSIFSYKKNYSAKKKFLSKRVKKESFSKLFLNIGYKDNLTKL 483

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            L+ ++ ++   +R +IG I +  + +  EV
Sbjct: 484 GLINLINQAVNNSRINIGNIEILSNFSLFEV 514


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +IQ +     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 202/373 (54%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +ALS   Y + T VQ  +L   L E+DV+V +QTGSGKT +FG+ L   +  E ++  
Sbjct: 15  VAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  ++  +     +  A   G     +++ +L+   HIVVG
Sbjct: 73  ----PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L +  ++ +V+DEADEML++GF D +E I+   P +R  ++FSAT+ 
Sbjct: 129 TPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++ Y K  V V I +     S ID+  + V    +   + ++       + I+F
Sbjct: 189 EDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVGNERKFELLKDVTTVENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+     L +  +    + G + Q++R   +   + G+ R  +ATDVAARGID+
Sbjct: 249 CRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ +L    E+ +HR+GRTGRAG+KG ++  +    +R    +      S+   
Sbjct: 309 DNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIEEYIGFSIPTS 368

Query: 371 PAPSVEAIRERDA 383
             PS E +++ ++
Sbjct: 369 TPPSKEEVQQAES 381


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 203/372 (54%), Gaps = 24/372 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----------- 58
            I  ALS+  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L             
Sbjct: 59  AILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMPAPQ 118

Query: 59  -----ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGG 111
                A  +  +  R +PA  P  L + PTRELA+QV  E    Y +    +V A  +GG
Sbjct: 119 RATEPAKRMKGKRPRPAPAQ-PALLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGG 176

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +   ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+ 
Sbjct: 177 MPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDA 236

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSD 230
           I++++P  R+ LMFSAT+   I  LA    KD  R+ IA+     S I+ R      +S 
Sbjct: 237 IVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMSH 296

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  +
Sbjct: 297 KERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTAL 356

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++  
Sbjct: 357 RRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVNH 416

Query: 351 N---MQRRAERL 359
           N     RR ER 
Sbjct: 417 NDMFQWRRIERF 428


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 128/334 (38%), Positives = 188/334 (56%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYVN T +Q A +   L  +DVL  AQTG+GKT +F L + + L     R   A  P +L
Sbjct: 23  GYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMITRLETGRAR---ARMPRSL 79

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA QV +  E       + VA+ IGGVS+  + + L  G  +++ TPGRL DH
Sbjct: 80  ILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVKKLDRGVDVLIATPGRLLDH 139

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
             G+G + +  ++ +V+DEAD MLD+GF  DIE I    P +R+ L FSAT+ P IT L 
Sbjct: 140 F-GRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPRRQTLFFSATMPPEITRLV 198

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTR 254
             + KD  R+ +A        I  R V     +   +   +  ++R    KNAI+FC+ +
Sbjct: 199 DQFLKDPTRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLRELIRDGNVKNAIIFCNRK 258

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V+   K L++H F    L G++ Q  R+  L   R+G   +  A+DVAARG+D+PD+ 
Sbjct: 259 RDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIMLLAASDVAARGLDIPDVS 318

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V + +L    ++ +HR GRTGRAGR+G S  ++
Sbjct: 319 HVFNFDLPWAADDYVHRIGRTGRAGREGHSASLV 352


>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
 gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
          Length = 662

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 198/369 (53%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE        
Sbjct: 21  ALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDAE------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     E+      V V    GG     + R L+ G  +VVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + +  D   V I S      DI      V    ++ A+V  L        I+F  
Sbjct: 195 IRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRFLETEDFDATIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  H +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374

Query: 373 PSVEAIRER 381
           P+ E + +R
Sbjct: 375 PNAELLSQR 383


>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 482

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 196/339 (57%), Gaps = 6/339 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++E G+   T+VQ  ++   L   D+LV++QTGSGKT AF L L + L+ +N   SP  +
Sbjct: 34  VAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLINQLIEDNPNNSPVPS 93

Query: 75  ---PLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P  L + PTRELA QV  + +  +    G+ +A  +GG+   ++ + L+ GA +VV 
Sbjct: 94  RAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQALK-GALLVVA 152

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K + +  +K +V+DEAD MLD+GF DD+E I      + + LMFSAT +
Sbjct: 153 TPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAGRNQTLMFSATFA 212

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249
           P I +LA     +A R+ +A    +H++I+ +     ++S +   + +IL       A+V
Sbjct: 213 PKIMSLANELTTNAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEHILADADLDQAVV 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+    +    L  + ++  AL G + Q  R   L+ +R GR ++ +ATDVAARGID
Sbjct: 273 FASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLESLRKGRTKILVATDVAARGID 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  VI+  L   PE+  HR GRTGRAGR G+++ ++
Sbjct: 333 VPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLV 371


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 198/357 (55%), Gaps = 8/357 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+AL   L   N R+    A
Sbjct: 71  LEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDPL---NPRYFGCQA 127

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A   + +    GGVS+  +   L++GAH++VGTPG
Sbjct: 128 ---LVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAHVIVGTPG 184

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H++   L +  L  +VLDEAD MLD+GF D I  I+  +P KR+ L+FSAT   +I
Sbjct: 185 RVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKRQTLLFSATYPASI 244

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA ++ +   +V + S +   S I+ R   +    R +A+  +L     ++ + FC T
Sbjct: 245 EQLAASFMRAPQQVRVESLH-TDSQIEQRFYEIDPEQRLDAVARLLASFRPESCVAFCFT 303

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L        AL+G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 304 KQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVATDVAARGLDIDAL 363

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           ++VI+ EL+ +PE  +HR GRTGRAG +G++  ++      RA+ + +     + W 
Sbjct: 364 DMVINVELARDPEIHVHRIGRTGRAGNQGLAASLVAPAEAHRAQAIEKLQKSPLNWH 420


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 216/386 (55%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +AL + GY   + +Q A + P L  +DVL  AQTG+GKT AF L + + +   N
Sbjct: 14  LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDC-N 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R +      AL +APTRELA+QV      +     G  V    GG S   +   L+ GA
Sbjct: 73  ARHT-----QALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEADEML +GF DD+E IL  +P +R++ +F
Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y +D   + I +     + I  R  +V+   + +A+  IL     +
Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + LA   F   AL+G++ Q  R   +Q ++DG+  + +ATDVAA
Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P  +++ R  ER  R+
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ 388
               +     PS EA+ +    R ++
Sbjct: 368 PITQMQL---PSTEAVNDSRISRFME 390


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 231/427 (54%), Gaps = 16/427 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +      A   +
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQGI 55

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ DH
Sbjct: 56  VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A+
Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  +   + + ++     +I    + V    + + +  +L     + AI+F  T+  V 
Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVD 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVYN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     V    AP+++  
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDEA 355

Query: 379 RERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
            E   QR++ + L   +I+ D     K++ + +L ++D   + A  L++    +    + 
Sbjct: 356 LE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----MTKEPDT 409

Query: 435 TPVSLVS 441
           TP++L S
Sbjct: 410 TPIALTS 416


>gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
 gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
          Length = 481

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 203/378 (53%), Gaps = 10/378 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  IELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  + G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358

Query: 361 REANVSVVWEPAPSVEAI 378
                 +     PS+E +
Sbjct: 359 DYIEKEIPKRKEPSLEEV 376


>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
 gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
          Length = 425

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/344 (37%), Positives = 188/344 (54%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   ++R S      AL + PTRELA+Q+G         TG+  AV  GGV    +  +L
Sbjct: 63  LYKTDNRKSIK----ALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDEL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    +N+  L+  VLDEAD MLD+GF  DI  IL   P KR+
Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +      +V +   +     I      V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K+ ++F  T+    +  + L++   +  A+ G  SQ  R  AL   ++   RV IAT
Sbjct: 239 PAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + + A   RF     
Sbjct: 23  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARIDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 197 AKLSQQFLRHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLA 375

Query: 374 SVEA 377
            ++A
Sbjct: 376 ELKA 379


>gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
          Length = 627

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 142/413 (34%), Positives = 223/413 (53%), Gaps = 15/413 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+V+   VQE ++   L  K DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           L    L + D  S  +   A+ ++PTREL +Q+  +L+    Y K  + V    GG S+ 
Sbjct: 61  L----LQKIDVASKHTQ--AIILSPTRELCLQIADDLKDFAKYIKN-LHVEPVYGGASIV 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++GA I+V TPGRL D +      + H+  VVLDEADEML++GF + I  IL  
Sbjct: 114 TQIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R  L+FSAT+S  I  +AK Y +D   + + S N    ++++   +V   D+  A+
Sbjct: 174 VPDDRNTLLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    
Sbjct: 234 KRIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ +L  VI+  +  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 294 QLLVATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
              + +      V    P+ + I  +   + + D   ++ I  DE+++   ++
Sbjct: 354 VRAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMV 403


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 211/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPV 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  + V +  +  +   I+          R   ++++L ++   + +VFC
Sbjct: 191 GIERISARVQRQPINVEV-DDGDEVPAIEQVFFETTREKRLPLLISVLSHYQPSSCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL LV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMS-RAHAIEDYLQIKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R A  +L+  +    I G  K  +
Sbjct: 369 PAEPV----SRSANAMLEPEMVTLCIDGGRKAKI 398


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/397 (36%), Positives = 211/397 (53%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 22  LAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPG
Sbjct: 78  --AMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIVVGTPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 136 RIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +A E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 196 AKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 255 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P  
Sbjct: 315 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIEQALKREVEWHPLA 374

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    DA   L  P+    I G  K  +   DVL
Sbjct: 375 ELKA----DASEPLLPPMETLQILGGRKDKIRPGDVL 407


>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 379

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 208/368 (56%), Gaps = 15/368 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWL 97
           D++  AQTG+GKT AF L +         R  P+   P AL +APTRELA+QV    E  
Sbjct: 12  DMIGQAQTGTGKTAAFALPILH-------RIDPSKREPQALILAPTRELALQVATAFET- 63

Query: 98  YAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
           YAK   GV V    GG  +  + + ++NGA IVV TPGRLCDH+R     ++ +  +VLD
Sbjct: 64  YAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLD 123

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EADEML LGF DD+E I  + P+ ++ ++FSAT+  +I  +A+ + +D   V I ++ + 
Sbjct: 124 EADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQT 183

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            + I+   +LV    + +A++++L        I+F  T+ +       L    ++  AL+
Sbjct: 184 VTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALN 243

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+++Q +R   ++ ++DGR  + +ATDVAARG+D+P +  V + ++  +PE+ +HR GRT
Sbjct: 244 GDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRT 303

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFL 393
           GRAGR+G ++ ++    +R  + + R     V     P  +A+ +   +++     PL  
Sbjct: 304 GRAGREGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVA 363

Query: 394 D--SIQGD 399
           D  S  GD
Sbjct: 364 DAESTHGD 371


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 194/354 (54%), Gaps = 10/354 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E  P+++ +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +  
Sbjct: 3   FKELELSPELL-KSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML- 60

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                 ++  P    L  L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  ------EKIDPDRHELQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 348


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 LPANSSIVPLEAE 381


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 156/534 (29%), Positives = 270/534 (50%), Gaps = 56/534 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ EAL+  GY   + +Q+A +   +  +D++  AQTG+GKT AF L L + L AE  
Sbjct: 58  PEIL-EALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLDAEQR 116

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           +      P  L +APTRELA+QV        A+   V  V + GG     +   L+ GA 
Sbjct: 117 K------PQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQ 170

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L   P++R++++FS
Sbjct: 171 VVVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFS 230

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  +++ Y      + I ++    S I  R + V    +  A+  +L    ++ 
Sbjct: 231 ATMPAEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLKLAALERVLESETSEG 290

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+A      + L  H + V  L+G++ Q +R   ++ +++G+  V +ATDVAAR
Sbjct: 291 VIIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAAR 350

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R A   
Sbjct: 351 GLDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKP 410

Query: 367 VVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +     PS   I +    R+   L + L   ++  +E+ ++  ++             R+
Sbjct: 411 IEPMEVPSNATINQNRLDRLRQRLTNALHKSAVSPEEQALLSEIVQ------------RV 458

Query: 424 HRAGLCAPEEITPVS----------LVSGRDRF---------RDDSRAFKVGG--GSRDN 462
            +   C PE++   +          L+ G D F         R D R  + G   G+R+ 
Sbjct: 459 AQEQTCTPEQLALAALELSLGGKPLLLHGNDDFTQVRSQGPNRRDGRESRDGRDFGNREP 518

Query: 463 FKGSSW------------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
            +G S             F + +G + + +   L+  +   +G+  ++IG I++
Sbjct: 519 RRGRSERPVGAPEPDMERFRVELGWRDRIKPGNLVGAIANETGLQGRAIGRIQI 572


>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 393

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 205/358 (57%), Gaps = 15/358 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LAST 61
           N+   + +A+ +  +   T +Q   L   L+  D++  AQTG+GKT AF +     L S 
Sbjct: 18  NLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQRLVSN 77

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +   +RFS  S P AL +APTRELA+Q+ ++   L     + +   IGG  + R+RR L
Sbjct: 78  PILTEERFS--SEPRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKL 135

Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ A  +++ TPGRL DH+    + +  ++ +VLDEAD MLD+GF  D++ I+ ++P++R
Sbjct: 136 RDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRER 195

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA+ + ++ V V +A ++     +D R  +V  S +   +VN+L+
Sbjct: 196 QTLLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLLVNLLK 255

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  IVFC+ R      ++ L  H  +   +SGEL QQ+R   L+  R G  RV +A
Sbjct: 256 DSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGDFRVLVA 315

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           TDVA RG+ +  +  V++  L  +PE+ +HR GRTGRAG  G+S+        F+IP+
Sbjct: 316 TDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSFLIPE 373


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEINSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 LPANSSIVPLEAE 381


>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 649

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+  +G+   T +Q A + P L   D  ++  A+TG+GKT AFGL L   L       SP
Sbjct: 60  AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 112

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA QV  EL  L  +    +    GGVS+  + R+L+ G  I+VGT
Sbjct: 113 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 172

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K  R+LMFSAT+  
Sbjct: 173 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I ++A  +      V   +       I+    +V  +D+  A+V ++        +VFC
Sbjct: 233 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 292

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +ATDVAARGID+ 
Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L +  N  +    
Sbjct: 353 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 412

Query: 372 APSVEAIRERDAQRIL 387
            P VE I  +   RI 
Sbjct: 413 VPLVEHILTQKEGRIF 428


>gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 680

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 188/338 (55%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T VQ +   P    KDV+V ++TG+GKT AF + +   +     R     
Sbjct: 34  AIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILERIADGRRR----- 88

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA+QV +E   L     + V    GG S+  + + L+ GA I+VGTPG
Sbjct: 89  -PSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAGAEIIVGTPG 147

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHIR + L +       LDEADEML++GF +++  ILD+ PK  + L+FSAT+   I
Sbjct: 148 RIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFSATVPADI 207

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             + ++Y  D   + ++ +     +I    Y AV      R+  ++ ++     + AIVF
Sbjct: 208 EQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRN--LLYMIEMEEPETAIVF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR   S    VL  + +    L+G+L Q+ER   +  ++ G  R  +ATD+AARGID+
Sbjct: 266 CNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  VI+  L  +P   LHR GRTGR G+KG S+ ++
Sbjct: 326 SDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIV 363


>gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
 gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
          Length = 481

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 203/378 (53%), Gaps = 10/378 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  IELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  + G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358

Query: 361 REANVSVVWEPAPSVEAI 378
                 +     PS+E +
Sbjct: 359 DYIEKEIPKRKEPSLEEV 376


>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
 gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
          Length = 646

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 146/428 (34%), Positives = 220/428 (51%), Gaps = 27/428 (6%)

Query: 14  ALSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           A++ +G+   T +Q      +LN D    +V+  A+TG+GKT A+GL L   L       
Sbjct: 32  AVAAKGFEEPTPIQVLAIPRLLNGD---ANVIAKARTGTGKTAAYGLPLVQELR------ 82

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P   P AL + PTRELA+QV  E+E     T   +    GG S+  + R+L+ G  IV 
Sbjct: 83  EPREKPRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNLKRGCEIVA 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    LN+  ++  +LDEADEML++GF +DIE I   +    R+LMFSAT+
Sbjct: 143 GTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVLMFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A ++  +   V   +        +    +V   D+  A+V ++        +V
Sbjct: 203 PKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAENFYGLV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+       K L E  ++  AL G++ Q +R   L   R G+ R+ +ATDVAARGID
Sbjct: 263 FCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V++  +  +     HR GRTGRAG KG +V  I  N +RR + L R A   ++ 
Sbjct: 323 IEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRRHARGELLE 382

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK----IAAGFLRIHR 425
              PS+E +    AQ+  QD LF      D ++ +D + A+H   K    +A   L  ++
Sbjct: 383 GKIPSIEKVL---AQK--QDRLF-----SDLRRQLDTVQAEHTVNKSFIELARELLAGNK 432

Query: 426 AGLCAPEE 433
           A L A EE
Sbjct: 433 ASLAATEE 440


>gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
 gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 LPANSSIVPLEAE 381


>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 606

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 169/588 (28%), Positives = 291/588 (49%), Gaps = 48/588 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +AL++ GY   T +QE  + P +   + D+   AQTG+GKT AF L +   L  +N+ 
Sbjct: 13  IIKALTDLGYEKPTVIQEKAI-PQIISSDTDLKAFAQTGTGKTAAFSLPILELLEEDNNN 71

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   A+ ++PTRELAVQ+G  ++    Y K  V V    GG S+  + R L+ G+ 
Sbjct: 72  VQ------AIILSPTRELAVQIGNNIKDFCKYLKN-VKVTTVYGGSSMEDQIRSLKKGSQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR  D I  + L + +++ +VLDEADEML++GF+++++ +L+++P+ ++ L+FS
Sbjct: 125 IVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  +A+NY    V V    +N    ++ +    V    R  A+  I   +    
Sbjct: 185 ATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAVTERTRYPALKRIADLNPDIY 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC TR         L +  +   +L G+LSQ +R + +   R    ++ +ATDVAAR
Sbjct: 245 AIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  VI+ +L    EN  HRSGRTGRAG KG+S+ ++    + +   + R     
Sbjct: 305 GLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVIERIIKQK 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKHDPEKIAAGF 420
            V    P+ + I E     ++     ++  + +E ++ + L      L   D E++   F
Sbjct: 365 FVEGKVPTGKEIVENQLMNLIDK---VNDTKVNESEIKEFLPSIYDKLKDLDREELIQKF 421

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           + +    + A  E +        D  R++SRA      + DN    + F +++G K    
Sbjct: 422 VSLEFNTMLAYYENSK----DLNDLGRENSRA----RATADNM---TRFFINIGRKDSLN 470

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV------------SADGVDLLRRTVKLD 528
              L+ ++   +  ++  IGAI +    +F E+            +++  D   R+V ++
Sbjct: 471 PAKLIGLINDQNIGDKIEIGAIDILDTFSFFEIDKNFESETLDAFASNQPDFDGRSVNVE 530

Query: 529 KGIQLKYLG---GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              + +  G   G+K  F G K  GF  + S +G++ R     G  +N
Sbjct: 531 ITKKERSGGGRRGKKKSF-GKKDGGFGRRRSAEGSSSRRSSDNGGGRN 577


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 192/346 (55%), Gaps = 6/346 (1%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P++    L+E+G    T +Q   +   L  +DVL  AQTG+GKT AFGL L  
Sbjct: 3   FENLGLSPRLAAR-LAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERR 119
            L A     +P +  LAL +APTRELA Q+   L       G   + + +GG S++ +  
Sbjct: 62  ALTAAGTHAAPNTV-LALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQAN 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +  K L +   + +VLDEAD+MLDLGF   +  I    PK+
Sbjct: 121 ALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPKE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   ++ +A  Y  D VRV ++   +    +D     VA   +   ++++L
Sbjct: 181 RQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H  + A+VF  T+    R  K L    F   ++ G  SQ +R+ AL   R+G+ RV +
Sbjct: 241 DAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+P +  V + EL + PEN +HR GRT RAG  G +V
Sbjct: 301 ATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAV 346


>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
 gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
          Length = 457

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +TSVQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --GLVLCPTRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 194/348 (55%), Gaps = 7/348 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG AL    +   T VQ  ++   L+ +D++V +QTGSGKT A+G+ L   +  E ++  
Sbjct: 15  IGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCELVSWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELAVQV  +L  +     V  A   G    H ++ +L+   HIV G
Sbjct: 73  ----PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQKTHIVAG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI      +S L  +V+DEADEML++GF D +E I+   P +R  ++FSAT+ 
Sbjct: 129 TPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTMLFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L +NY +D V V I +       I++  + V+ +D+   + +I       + I+F
Sbjct: 189 EDVDQLRRNYMRDPVSVEIQATGLTTDAIEHAQIKVSEADKLELLQSITIVENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+   + LA   +    + G ++Q+ER   +   R G+ R  IATDVAARGID+
Sbjct: 249 CRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYLIATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
            ++  VI+ +   + E  +HR+GRTGRAG++G ++ FV P +  R AE
Sbjct: 309 DNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAE 356


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 194/343 (56%), Gaps = 12/343 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           AL+E GY   T +Q A +       DV+ +AQTG+GKT  F L +   LL + N   SPA
Sbjct: 27  ALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 86

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+V T
Sbjct: 87  RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 146

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT SP
Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 206

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245
            I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR        +
Sbjct: 207 EIKRLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLRQRAEQGLPR 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATDVAA
Sbjct: 265 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           RG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 325 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 367


>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
 gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 624

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 144/424 (33%), Positives = 219/424 (51%), Gaps = 23/424 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + + A+     
Sbjct: 17  ILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNIKAD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     E+     GV V    GG     + R L+ G  +VV
Sbjct: 72  -LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGPQVVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I S      DI      V    ++ A++  L       AI+
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  M   LL K  P      E +AA 
Sbjct: 371 VDLPNAELLGQRRLAKFAAKVQQ------QLESSDLDMYRALLGKLQPQEELDIETLAAA 424

Query: 420 FLRI 423
            L++
Sbjct: 425 LLKM 428


>gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           230613]
          Length = 481

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 10/354 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     V L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVR 352


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/328 (37%), Positives = 182/328 (55%), Gaps = 10/328 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD++  A TG+GKT AFGL +        D+ +      AL I PTRELA QV  EL  L
Sbjct: 39  KDLVGQAHTGTGKTAAFGLPMM-------DKLAKGEIERALVITPTRELATQVADELYHL 91

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G+      GGV   R+   +  G  IVV TPGRL D  R   +++ + + VVLDEA
Sbjct: 92  GRFAGIRTLTVYGGVGYGRQIALIHKGVQIVVATPGRLKDLYRKGKIDVLNPEIVVLDEA 151

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQ 215
           DEMLD+GF D+I+ I +  P+ R+ L+FSAT+   I  LA +  YQ + + V +  E   
Sbjct: 152 DEMLDMGFLDEIKEIFEYIPQNRQTLLFSATMPEPIKELANHILYQPEFISV-VGDEETT 210

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           ++ I+ R  ++  + RD AIV +L        I+FC  +  V R T+ L    F    L 
Sbjct: 211 NNIIEQRYYVINENQRDEAIVKLLETEDTNKCIIFCRMKREVDRLTEYLQAQGFNASGLH 270

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+L QQ+R   ++  R G  ++ +ATDVAARG+D+ D+  V +  +  +P++ +HR GRT
Sbjct: 271 GDLEQQDREVVIKAYRRGETKIMVATDVAARGLDVKDVTHVFNYHIPFDPQSYVHRIGRT 330

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREA 363
           GRAG+ G ++ ++     R  +R+ +E 
Sbjct: 331 GRAGKSGQAITLVTTEEFRELQRIQKEV 358


>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
 gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
          Length = 649

 Score =  217 bits (552), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+  +G+   T +Q A + P L   D  ++  A+TG+GKT AFGL L   L       SP
Sbjct: 60  AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 112

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA QV  EL  L  +    +    GGVS+  + R+L+ G  I+VGT
Sbjct: 113 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 172

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K  R+LMFSAT+  
Sbjct: 173 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I ++A  +      V   +       I+    +V  +D+  A+V ++        +VFC
Sbjct: 233 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 292

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +ATDVAARGID+ 
Sbjct: 293 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 352

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L +  N  +    
Sbjct: 353 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 412

Query: 372 APSVEAIRERDAQRIL 387
            P VE I  +   RI 
Sbjct: 413 VPLVEHILTQKEGRIF 428


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 188/337 (55%), Gaps = 6/337 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ + GY   T +Q   +   ++ +DV+  AQTG+GKT AFG+      L +
Sbjct: 10  NLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPA----LEK 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR S     + L   PTRELA QV  EL  L     + V    GG  + R+ + L  GA
Sbjct: 66  VDRNSKKVQTIVLC--PTRELANQVADELNKLARYKKIKVLPIYGGQPIERQIKALNKGA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DH+    L++ ++K  VLDEADEMLD+GFR+DIE IL   P KR+  +F
Sbjct: 124 QIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPDKRQTTLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K YQ +   +    +      ++     V    +  A+  +  ++  K
Sbjct: 184 SATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQVEQTYFEVKERSKPEALCRLTDFYNIK 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V    + L    +    L G++ Q++R   +   ++G     +ATDVAA
Sbjct: 244 SSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RGID+ ++E+V + ++  + E+ +HR GRTGRAG++G
Sbjct: 304 RGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQG 340


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 204/373 (54%), Gaps = 21/373 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------------- 58
           ALSE  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L                 
Sbjct: 72  ALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMPAPQRATE 131

Query: 59  -ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
            A  +  +  R SPA  P  L + PTRELA+QV  E    Y +    +V A  +GG+   
Sbjct: 132 PAKRMKGKRPRPSPAQ-PALLVLTPTRELALQV-TEAAAKYGRNLRRIVCASILGGMPYP 189

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+ I+++
Sbjct: 190 KQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDIDAIVNA 249

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNA 234
           +P  R+ LMFSAT+   I  LA    +D  R+ IA+     S I+ R      +S ++  
Sbjct: 250 TPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHFTDDMSHKERL 309

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  +R G 
Sbjct: 310 LDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTALRRGN 369

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G ++ ++  N   
Sbjct: 370 LRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVNHNDMF 429

Query: 355 RAERLFREANVSV 367
           + +R+ R  N  +
Sbjct: 430 QWKRIERFTNQRI 442


>gi|160899925|ref|YP_001565507.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160365509|gb|ABX37122.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 481

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 203/360 (56%), Gaps = 12/360 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY+ +T++Q A L P L  KDV+  A+TGSGKT AF LAL + L   N  FS    
Sbjct: 39  LERLGYLEMTAIQLASLPPALEGKDVIAQAKTGSGKTAAFALALLAKLDTRN--FSVQ-- 94

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  E+  L  A+  V V    GGV +  +   L+NGAH++VGTPG
Sbjct: 95  --GLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPG 152

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    LN+  L  +VLDEAD MLD+GF DDI  +    P +R+ L+FSAT    I
Sbjct: 153 RVIDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGI 212

Query: 194 TTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA  + +D V V +A+   QHS   I+ R   V   +R  ++  +L +   ++ + FC
Sbjct: 213 AKLAARFMRDPVTVKVAA---QHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFC 269

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+A      ++L    +  + L G+L Q++R   L    +G   V +ATDVAARG+D+ 
Sbjct: 270 NTKARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVT 329

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +L  VI+ +++ +PE  +HR GRTGRAG+KG+++ +   +       + +      VW P
Sbjct: 330 NLGAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVWYP 389


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 12/343 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           AL+E GY   T +Q A +      +DV+ +AQTG+GKT  F L +   LL + N   SPA
Sbjct: 27  ALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 86

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+V T
Sbjct: 87  RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 146

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT SP
Sbjct: 147 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 206

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245
            I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++L+        +
Sbjct: 207 EIKKLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLKQRAEQGLPR 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATDVAA
Sbjct: 265 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           RG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 325 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 367


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 12/413 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN      
Sbjct: 14  KAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   L I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    I+VGTP
Sbjct: 68  PAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FSAT+ P 
Sbjct: 128 GRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 188 IKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M      E+L R   + +  
Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRARMLPL-- 365

Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +P    EA R + A      D L  D       +    LL K+D  ++ A  L
Sbjct: 366 KPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALL 418


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 201/354 (56%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L  +  +     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLNLDQRK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +   + ++   V++A +N     ++ +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSS 367


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 210/387 (54%), Gaps = 27/387 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----------- 58
            I  AL+E  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L             
Sbjct: 59  AILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKPATH 118

Query: 59  -----ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGG 111
                A  +  +  R SPA  P  L + PTRELA+QV  E    Y +    +V A  +GG
Sbjct: 119 RPTEPAKRMKGKRPRPSPAQ-PSLLVLTPTRELALQV-TEAAAKYGRHLRRIVCASILGG 176

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +   ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+ 
Sbjct: 177 MPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGFADDIDA 236

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSD 230
           I+ ++P  R+ LMFSAT+   I  LA    +D  R+ IA+    HS+I+ R      +S 
Sbjct: 237 IVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHFTDDMSH 296

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  +
Sbjct: 297 KERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTAL 356

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++  
Sbjct: 357 RRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVNH 416

Query: 351 N---MQRRAERLFR---EANVSVVWEP 371
                 RR ER      +A+V   +EP
Sbjct: 417 GDMFQWRRIERFTNNRIDASVIEGFEP 443


>gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 644

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 199/376 (52%), Gaps = 9/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+  +G+   T +Q A + P L   D  ++  A+TG+GKT AFGL L   L       SP
Sbjct: 55  AVRLKGFRCPTPIQAAAI-PRLLAGDANIIAKARTGTGKTAAFGLPLIQEL------GSP 107

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA QV  EL  L  +    +    GGVS+  + R+L+ G  I+VGT
Sbjct: 108 CEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLRNLEQGGEIIVGT 167

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K  R+LMFSAT+  
Sbjct: 168 TGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPR 227

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I ++A  +      V   +       I+    +V  +D+  A+V ++        +VFC
Sbjct: 228 QILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFC 287

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +ATDVAARGID+ 
Sbjct: 288 QTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIE 347

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L +  N  +    
Sbjct: 348 GITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSKHCNGELKAST 407

Query: 372 APSVEAIRERDAQRIL 387
            P VE I  +   RI 
Sbjct: 408 VPLVEHILTQKEGRIF 423


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 213/384 (55%), Gaps = 15/384 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+S+ G+   + +QE  +   L   D++  AQTG+GKT A+ L + +       + S
Sbjct: 15  IVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIIT-------KMS 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
                 +L +APTRELAVQV  E++ L     +V     GG S+ R+ R L+ G   IVV
Sbjct: 68  DNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKGDVDIVV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D ++ K L++  ++ +VLDEADEML++GF DDI+ IL  +P +R+ L+FSAT+
Sbjct: 128 GTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLFSATM 187

Query: 190 SPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              I  LAK Y K DA  V+I   +   S I+    ++    R  A+  +L      +AI
Sbjct: 188 PDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNPSSAI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V    + L    + V  + G+++Q  R   L   ++G   + IATDVAARGI
Sbjct: 248 IFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANV 365
           D+  +  V + +L  + E+ +HR GRTGRA + G +   V P++  M ++ + + +    
Sbjct: 308 DVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQNVTKS--- 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQD 389
           S+  +P P+ E I  +  + ++ +
Sbjct: 365 SITQKPVPTAEEINNKKFKDMMSE 388


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 191/345 (55%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L    
Sbjct: 9   LSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT+ P I  LA  + ++  RV +A        +  R V     D +   V   ++R  G 
Sbjct: 186 ATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGE 245

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+DV
Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 197/355 (55%), Gaps = 10/355 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +   I E+L+   +V+ T +Q   +   L   D+L  AQTGSGKT AFG+ +
Sbjct: 1   MTTFEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+    +  S       L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  VDTVRKTEELQS-------LILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  K + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K++ KD   V   S+   + DI   A +   +++   ++  
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEFATIARENEKLETLIGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G++V F+ P  M
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEM 348


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 203/355 (57%), Gaps = 12/355 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L LA+       
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGT
Sbjct: 74  -KPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P
Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L       +IVF 
Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367


>gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str.
           Okra]
 gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str.
           Okra]
          Length = 481

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 195/351 (55%), Gaps = 10/351 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     V L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPN 349


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 202/367 (55%), Gaps = 14/367 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L +KD++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSLQKIIKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P  L + PTRELA QV +  + +YA     V     +GG S  ++ + L  
Sbjct: 69  SEK--PGKGPRVLVLTPTRELAAQVEKNAQ-IYANNMKWVRTVTLVGGSSFGQQIKMLSR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL DH+R   ++   L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L
Sbjct: 126 PIDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           +FSAT   A+  LA+   K+   + I  E++Q   I+ + +     +  N +++ ILR  
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEIEREDKQ-GKIEEQLLYCDDKNHKNRLLDHILRDA 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATD
Sbjct: 245 NIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRR 355
           VAARGID+P +  VI+ +L    E+ +HR GRTGRAGR GM++       ++    ++R 
Sbjct: 305 VAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVHKIERY 364

Query: 356 AERLFRE 362
            ER   E
Sbjct: 365 IERKLPE 371


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 268/519 (51%), Gaps = 32/519 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+++ G+   T +Q   +   L+  D++  AQTG+GKT AFG+     L  +
Sbjct: 10  NLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEMLDPQ 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           N+          L ++PTRELA+Q+  EL  +   K G+ +    GG  + R+   L+  
Sbjct: 70  NEGIQ------VLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKKR 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DH+R + L ++ LK ++LDEADEML++GFR+DI+ IL+  P++++ ++
Sbjct: 124 PQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQTIL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L   Y K+ + +  A +      I+   + V+ S +   +  ++  +  
Sbjct: 184 FSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLEVSQSSKLEILSRLIDANNI 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++VFC+T+  V   T  L    +   AL G++ Q +R+  +   R G+  + IATDVA
Sbjct: 244 GLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREA 363
           ARGID+ ++E V + +L S+ E  +HR GRTGRAG+ G S  FV+ + + +  + + R  
Sbjct: 304 ARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKD-IQRYT 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKK---MVDVLLAKHDPEKIA 417
             ++     P+   + ER    IL   +D L     +G+  K    V+ +L + + + + 
Sbjct: 363 KSTIHLIKPPTAMDVEERKIGLILNKVKDTL----AEGNFSKYVSYVEKVLDEANSKDLD 418

Query: 418 AGF---LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
             +   L I  A L    +       + +D   +D+       GS++   G     ++VG
Sbjct: 419 TNYVTNLEIAAALLKTIFDQNNDQTSNAQDIIEEDT-------GSKE---GMVRLFINVG 468

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
              K + + ++  +   + +  + IGAI +    TFVEV
Sbjct: 469 RDSKIQPKHIVESIASCTSLPGKLIGAIDIFDRFTFVEV 507


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +IQ +     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           voltae A3]
 gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
          Length = 584

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 216/385 (56%), Gaps = 17/385 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           NI + I E L E+G+   T +QE     +L+ +L   DV+  AQTG+GKT+AFG+ +   
Sbjct: 7   NISESIMERLDEKGFTEATQIQEKAIPIVLDTEL---DVVGQAQTGTGKTLAFGIPIIQK 63

Query: 62  L---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           +   + EN R     A  A+ + PTRELA+QV  E++ +     + +    GG S+ ++ 
Sbjct: 64  IQEKIEENGR-KNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  IV+GTPGR+ DH+  + L ++ +  +VLDEADEML+LGF DD+E I+    +
Sbjct: 123 NKLRNGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKE 182

Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             R L+FSAT+  +I  L + +  + + +RV   +   + ++  Y    V   D+   + 
Sbjct: 183 DCRKLLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYE--VKEHDKFELLR 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        +VFC T+A V +  + L +  +   AL G+++Q++R  AL   +  +  
Sbjct: 241 RIIDKEPGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKID 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           + IATDVAARGID+ +L  VI+ ++  NPE  +HR GRTGRAG KG ++ FV P+   RR
Sbjct: 301 IMIATDVAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREF-RR 359

Query: 356 AERLFREANVSVVWEPAPSVEAIRE 380
            + + + +      E  P V  I E
Sbjct: 360 FKYIMKISKSDAKKEKIPDVTEIVE 384


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 204/377 (54%), Gaps = 7/377 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  + G+   T +Q   +   L+  D++  A TG+GKT AFG+    ++   N++     
Sbjct: 20  AAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIESVDTTNEKVQ--- 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L + PTREL +Q   EL  L   K G+      GG  + R+   L+    I+VGTP
Sbjct: 77  ---VLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQQIDRQIIALKKRPQIIVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   L + HLK ++LDEADEML++GFR+DI+ IL+S P++R+ ++FSAT++ A
Sbjct: 134 GRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQFVLFSATLAKA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A  YQ + + VN+  +      +    + V  S++   +  ++  +  K ++VFC+
Sbjct: 194 ILDIANKYQNNPITVNVVHKELTVPTVKQYYLEVRDSNKVEVLSRLIDANNFKLSVVFCN 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +   +L G++ Q +R N +   R+G   + IATDVAARGID+ D
Sbjct: 254 TKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIATDVAARGIDVDD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           ++ V + ++ S+ E  +HR GRTGRA R+G+S          +   + R     +     
Sbjct: 314 VDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDIQRYTKSKIKLIKP 373

Query: 373 PSVEAIRERDAQRILQD 389
           PS+E I+E     I+ D
Sbjct: 374 PSIEDIQENKLSGIIDD 390


>gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 592

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 198/366 (54%), Gaps = 12/366 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +        P+   P  
Sbjct: 2   GYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNI-------DPSVKQPQI 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV    E  YAK   G+ V    GG S   +   L+ GA ++V TPGRL
Sbjct: 55  LVLTPTRELAIQVAEAFEQ-YAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRL 113

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++++  +FSAT+   I  
Sbjct: 114 IDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQN 173

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           ++  Y  +  +V+I++ N   S ++ +    A   ++ AIV  L     + AIVF  TR 
Sbjct: 174 ISSKYMNNPEQVHISARNSTVSSVE-QVFWNASVHKNKAIVRFLEAEQYEGAIVFVRTRN 232

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              +  ++L    F    L+G+++QQ R   +  ++ G   + IATDVAARG+D+  L L
Sbjct: 233 DTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSL 292

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + + R     +     P+ 
Sbjct: 293 VINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTKSEIAQVELPTA 352

Query: 376 EAIRER 381
           + + E+
Sbjct: 353 KIVEEK 358


>gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 657

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 144/430 (33%), Positives = 224/430 (52%), Gaps = 28/430 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           +K FE   + + I  A+SE G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 25  LKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 83

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L   +       + + +  A+ ++PTREL +Q+  +L ++      + +A   GG S+ 
Sbjct: 84  PLLQRID------TSSKSTQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASID 137

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL  
Sbjct: 138 TQIHQLRHGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTG 197

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+
Sbjct: 198 VPEDRNTLLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLAL 257

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R    
Sbjct: 258 KRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLT 317

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 318 QILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYK 377

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + RE     +    PS E         I +  LF        K M ++L    D E+
Sbjct: 378 VRNIEREIGKEFIDGTLPSPE--------EICKKQLF--------KTMDNILKTDVDEEQ 421

Query: 416 IAAGFLRIHR 425
           IA     I+R
Sbjct: 422 IAPYMEDINR 431


>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
 gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
          Length = 660

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 171/567 (30%), Positives = 269/567 (47%), Gaps = 45/567 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L   +        P  
Sbjct: 21  ALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLLHNI-------DPTL 73

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELA+QV + L ++    +GV V    GG     + R L+ G  +VVGT
Sbjct: 74  KAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQLRALRQGPQVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P + +  +FSAT+  
Sbjct: 134 PGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPAEHQTALFSATMPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           AI  + + + K+   V I S      DI      V    ++  A+V  L       AI+F
Sbjct: 194 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVRFLESEDFDAAIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + IATDVAARG+D+
Sbjct: 254 VRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDILIATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R   +++   
Sbjct: 314 ERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQNVERTMKLTIPEV 373

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI- 423
             P+ E + ER   +          ++  +  M   LLAK  P      E +AA  L++ 
Sbjct: 374 QLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEDGFDLETLAAALLKMA 431

Query: 424 --HRAGLCAPE--------------EITPVSLVSGRDRFRDDSRAFKVGGGSRD------ 461
              R  +  PE                +       R   R + RA    GG R       
Sbjct: 432 QGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRDRGDSRREPRADSRDGGERPARRERR 491

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
           +      + + VG     E R ++  +     I+ + IG I++    + +E+      + 
Sbjct: 492 DVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEM 551

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           +    RT  L+K + ++ LG  +P  R
Sbjct: 552 LSHFTRTRILNKPLNMQLLGDAQPHER 578


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 196/345 (56%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   + P L  +D+L  AQTG+GKT +F L + + L     R
Sbjct: 11  QKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLTMLERGRAR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + + + IGGVS   + R L+ GA ++
Sbjct: 71  ---ARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQYRKLERGADVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT
Sbjct: 128 IATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPFTRQTLFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYH-G 243
           + P I  LA  + ++  R+ +A  +   + +  +  LVA S +D      + +++R    
Sbjct: 188 MPPEIQKLADKFLQNPARIEVAPPSSTAATVTQK--LVACSGKDFEKRERLRDLIRSQTD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAI+FC+ +  V+   K L +H F V AL G++ Q+ R+N LQ  +D    + +A+DV
Sbjct: 246 LTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEITLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +  ++
Sbjct: 306 AARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLV 350


>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 529

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 157/519 (30%), Positives = 265/519 (51%), Gaps = 41/519 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I + + E GY   T +Q   +      +D++  AQTG+GKT AFG+ +       
Sbjct: 11  NIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPML------ 64

Query: 66  NDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
            ++ +P    P  L +APTREL++QV  E+           ++ I GG  + R+ + L+ 
Sbjct: 65  -EKINPQQKTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G +IVVGTPGR+ DHIR K L +  +  +VLDEAD+MLD+GF DDIE IL  +P +R+ +
Sbjct: 124 GVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTV 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT+   I  +AK Y K+  +V +  +      I      V   ++ +A+  IL    
Sbjct: 184 MFSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRILDMEN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           ++  I+FC T+  V    + L    + V  + G+L Q +R   ++  RDG   + IATDV
Sbjct: 244 SELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLMIATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D++LV++ ++  + E  +HR GRTGRAGR+G++  ++     R  + L    
Sbjct: 304 AARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTLKALEAYI 363

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ----GDEKKMVDVLLAKHDPEKIAAG 419
              +  +P P++  I E+  + I ++   + +I+     +   +V+ L  ++    +AA 
Sbjct: 364 KGKIKRKPIPTINDIVEKKKEMIGKE--IIGNIEKGGLSEYAAIVENLSEEYSSIDVAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL-----SVG 474
            L++  +                    ++++ AF+      +  K  S  S+     ++G
Sbjct: 422 LLKMIMS--------------------QNETDAFETAKNITEK-KAKSEGSMVRMFVNIG 460

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            K  A+   ++  +   SGI+   +G I +    TFVEV
Sbjct: 461 KKHGAKPGDILGAISGESGISGDLVGVIEMYDKFTFVEV 499


>gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC
           35405]
 gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
           denticola ATCC 35405]
          Length = 570

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 165/576 (28%), Positives = 266/576 (46%), Gaps = 35/576 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           ++ +A+  +G+   T +Q  +  P L   E +V+  A+TG+GKT AFGL L   L +   
Sbjct: 13  IVLQAVEAKGFEEPTPIQ-VLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSNTG 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +        AL + PTRELAVQV  ELE    +    +A   GG ++  + R L+ G  I
Sbjct: 72  KVR------ALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGVEI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+    L I  ++  +LDEADEML++GF +DIE I   +  + R+LMFSA
Sbjct: 126 VVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I ++A ++  D   V    +  + S  +    +V   D+  A+V ++        
Sbjct: 186 TMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNFYG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+       K L E  ++  AL G++ Q +R   L+  R  + R+ +ATDVAARG
Sbjct: 246 LVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +  V++  +  +     HR GRTGRAG  G++V  +  N  +R E L + A   +
Sbjct: 306 IDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARGEL 365

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-------MVDVLLAKHDPEKIAAGF 420
                PS+E + E    RIL++       +  E+K         + L    D + + +  
Sbjct: 366 KEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLSFI 425

Query: 421 LRIHRAGLCAPEEITPVSLV--SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           L++      +P     +  V   G+ R  DD                S    + VG K  
Sbjct: 426 LQMQYGSFLSPAHYKTIKPVRSEGKARKSDDD---------------SLRLYIGVGRKDG 470

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG- 537
              R L  ML R   I  + +  I V    +   +  +  +   R  K  +G+   ++  
Sbjct: 471 ITKRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDV 530

Query: 538 -GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             E P   G    G + +  ++G  ++ +    ASK
Sbjct: 531 KSEAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566


>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 421

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 5/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+S  GY   T +Q   +   L   DVL +AQTG+GKT  F L L   L+ +N R  
Sbjct: 17  ILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLLERLI-QNPRQM 75

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +        +   V  GGV +  ++R +  G  IV+ 
Sbjct: 76  KARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKRAIARGCEIVIA 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +++S L+ ++LDEAD MLD+GF  DI+ I+  +PK+R+ L+FSAT S
Sbjct: 136 TPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQTLLFSATFS 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA    KD V + +A +N     +  +   V    +   ++ +++  G K  +VF
Sbjct: 196 PEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKVHHVDRHRKQELLIRMIKEKGWKQVLVF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ +K L +      A+ G  +Q  R  AL+  ++ R RV +ATD+AARGID+
Sbjct: 256 TRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVLVATDIAARGIDI 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
             L  V++ EL +  E+ +HR GRTGRAG +G +   V V    + R  ER F +A +  
Sbjct: 316 AALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRNIER-FIKAEIPK 374

Query: 368 VWEPAPSVE 376
           +  P   V+
Sbjct: 375 IATPGFEVD 383


>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
 gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
          Length = 559

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 210/370 (56%), Gaps = 17/370 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL E+G  + T VQ+  +   +  +DV+  A TG+GKT+AF L +   L  +       
Sbjct: 25  EALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPILQKLNLDKRH---- 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL IAPTRELA+Q+  E   L A +  + +    GG  V R+ R L+ GA +++GT
Sbjct: 81  --PQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQLRKLKGGAQLIIGT 138

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L++  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++FSAT+  
Sbjct: 139 PGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVPYRRQTMLFSATMPA 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            I  LA+ Y  + V V + S +        R V+V  +DR    A+V++L       A++
Sbjct: 199 GIRKLARVYMNEPVDVKVKSASSVPVS-QIRQVVVQTTDRGKQQALVDMLNTDRPYLAVI 257

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   ++  + L E  F+   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D
Sbjct: 258 FCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQLLVATDVAARGLD 317

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----IPQ--NMQRRAERLFRE 362
           +  +  V + ++  + E+ +HR GRTGRAG KG++V +     +P+  N+QR A   F  
Sbjct: 318 VEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPELRNIQRVAGVTFTS 377

Query: 363 ANVSVVWEPA 372
           +       PA
Sbjct: 378 SEGGGQRRPA 387


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +IQ +     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +IQ +     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 598

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 209/361 (57%), Gaps = 17/361 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +A+ + G+ + + VQE  + P L   E D++  AQTG+GKT AFG  L         +
Sbjct: 13  ILKAIEDMGFESPSEVQEKTI-PILLDEETDMVALAQTGTGKTAAFGFPLIQ-------K 64

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P S    AL ++PTREL +Q+  EL+    Y  +   VAV  GG S+  + + ++ GA
Sbjct: 65  IDPKSKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAV-YGGASITDQAKQIERGA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGR+ D IR K  +IS ++  VLDEADEML++GF +DI  IL  +PK++   +F
Sbjct: 124 QIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHTPKEKNTWLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + T+AK + ++ V V + S+N   +++ +   LV   DR  A+  +   +   
Sbjct: 184 SATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNARDRYAALKRLADANPDI 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAA
Sbjct: 244 FSVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQMLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFRE 362
           RGID+ D+  VI+ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+    ER+ ++
Sbjct: 304 RGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKIKSIERIIKQ 363

Query: 363 A 363
           +
Sbjct: 364 S 364


>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 492

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 203/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 33  KSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 90  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 146 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  +  ++DI  R  ++   +R  AI+ +L     K +IVF  
Sbjct: 206 IKRLADKILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLLDTQAPKKSIVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 266 TKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDIGG 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 326 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 385

Query: 373 PSV 375
           P++
Sbjct: 386 PTI 388


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVMLEAE 381


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 194/343 (56%), Gaps = 12/343 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           AL+E GY   T +Q A +       DV+ +AQTG+GKT  F L +   LL + N   SPA
Sbjct: 32  ALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIHNLLPDANTSASPA 91

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  I+V T
Sbjct: 92  RHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQTEQLRRGVEILVAT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT SP
Sbjct: 152 PGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSATFSP 211

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG----AK 245
            I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR        +
Sbjct: 212 EIKRLAASYLRHPQTIEVARSNATAENV--RQVIYTVPDNHKQAALVHLLRQRAEQGLPR 269

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATDVAA
Sbjct: 270 QCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGTVDVLVATDVAA 329

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           RG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 330 RGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 372


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/424 (32%), Positives = 226/424 (53%), Gaps = 10/424 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ FE+  + Q I +A++E G+   + VQ   +   L+  D++  AQTG+GKT AFGL  
Sbjct: 1   MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S + A  +R         L I PTRELA QV  EL  L    G+      GG S  R+ 
Sbjct: 61  MSMIDANQNRVQ------LLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ GA ++V TPGR+ D ++   L     K VVLDEADEMLD+GF +DIE I    PK
Sbjct: 115 GLIEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT+   I  LA     +   V+I  ++   + DI+    ++   +RD+A++ 
Sbjct: 175 ERQTLLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + +IVFC T+  V R +  L    +    L G++ Q +R + ++  R  +  +
Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+++ D+  V +  +  +PE+ +HR GRTGRAG+KG ++ ++        +
Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+ ++    +     P++  ++E    +I  D +    +  +  K++ +L  + D  +IA
Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADD-IKNAELNENASKLLAILEEEMDMSQIA 413

Query: 418 AGFL 421
              L
Sbjct: 414 LKLL 417


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 135/345 (39%), Positives = 197/345 (57%), Gaps = 24/345 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+  +G+   T +Q  I+      EKD++  AQTGSGKT AF L +   +   ++R    
Sbjct: 21  AVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILDLV---DERSKDV 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + I PTRELA+QV  E+E L     V V    GG  +  +   L+ G  IVVGTP
Sbjct: 78  QA---IVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERLRKGVQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+  + L++  ++  VLDEAD MLD+GF DDIE IL  +  +RR+LMFSAT+ P 
Sbjct: 135 GRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERRVLMFSATMPPE 194

Query: 193 ITTLAKNYQKD--AVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAK 245
           +  LA+ Y +D   VRV+  I  EN     +++R + V    R   +  IL    ++G  
Sbjct: 195 VLRLARRYMRDYEVVRVHSKITPEN-----VEHRCLKVNPEKRFEHLCRILDENNFYG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L    ++  AL+G++ Q +R + L+  R G  RV +ATDVAA
Sbjct: 248 --IVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           RGID+ DL  V++  +  +PE  +HR+GRTGR G++G ++ FV P
Sbjct: 306 RGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAP 350


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 90  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 206

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 324 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 382


>gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 592

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 204/366 (55%), Gaps = 8/366 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I +A+++ G+   + VQE  +   LRE+ DV+  AQTG+GKT AFG  L   +   N   
Sbjct: 13  ILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFPLIQRIDVNN--- 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   L ++PTREL +Q+  EL+   +   G+ V    GG ++  + R +  GA I+
Sbjct: 70  ---RNTQGLILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQEQARQISRGAQII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D +R   ++I+ +   VLDEADEML++GF +DI  IL  +PK ++  +FSAT
Sbjct: 127 VATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADTPKDKKTWLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +AK + K  + + + ++N    ++ +   +V   DR  A+  +   +    ++
Sbjct: 187 MPKEVARIAKQFMKSPIEITVGTKNMGAENVSHEYYMVNARDRYQALKRLADANPEIFSV 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ +ATDVAARGI
Sbjct: 247 IFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+   L +  N    
Sbjct: 307 DVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKIRTLEKIINKKFT 366

Query: 369 WEPAPS 374
            +  PS
Sbjct: 367 QKEIPS 372


>gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 528

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 132/390 (33%), Positives = 208/390 (53%), Gaps = 19/390 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ +  A+   G+   T +Q  IL P L   D    AQTG+GK+ AF +++ + LL E
Sbjct: 106 DLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLLRE 165

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QN 123
            D      A P AL +APTRELA+Q+ R+ E L   + +      GG    ++R+   Q 
Sbjct: 166 PDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKMFEQA 225

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RR 181
              +++ TPGRL D  R K +++  ++ +V+DEAD +LD+GF  D+  I+  +P+K  R+
Sbjct: 226 PVDLLIATPGRLLDFARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPEKSQRQ 285

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT++  I  L+  + KD V V I  E      ++ R  +V   ++   + N++  
Sbjct: 286 TLFFSATLNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAKEKMTVLYNLITG 345

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVFC+ R    R  + L  H      LSGE+SQQ+R   L   ++G+ RV +AT
Sbjct: 346 KQLERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEGKIRVLVAT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP---Q 350
           DVA RG+ +  +  VI+  L  + E+ +HR GRTGRAG  G+SV        F +P   +
Sbjct: 406 DVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEESFYLPAIEE 465

Query: 351 NMQRRAERLFREANVSVVWEP----APSVE 376
            M R+ + ++ E  + +   P    AP V+
Sbjct: 466 YMGRKLDCVYPEDELLIPLPPPVQKAPPVD 495


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 239/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L  ++I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QNTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 153/517 (29%), Positives = 248/517 (47%), Gaps = 51/517 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E+G+   T +Q   +   +   D++  AQTG+GKT +FG+ +        +R    
Sbjct: 17  QMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIPIL-------NRVIKG 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELAVQV  E+  L  +  + V    GG S+  + R L+    I+VGTP
Sbjct: 70  EGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQLRSLRRNPEIIVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    +++S LK VVLDEADEMLD+GF  DI+ IL   P++R+  +FSAT+   
Sbjct: 130 GRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCPRERQTFLFSATLPDE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L   + K    + I S  R   +I+     V    +   +  I+       +++FC 
Sbjct: 190 VRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCRIIDAQQPPISLIFCR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     +VL    +   AL G++SQ+ER + +   R G  ++ +ATD+AARG+   D
Sbjct: 250 TKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKILVATDLAARGL---D 306

Query: 313 LELVIHAELSSNPENL---LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +ELV H      PE+L   +HR GRTGRAGR G+++ ++     R    + R     +  
Sbjct: 307 IELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLRMIERHTGKRIER 366

Query: 370 EPAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDV-------LLAKHDPEKIAAGFL 421
              P++ EA+ +R      QD L L+ ++    +  DV       L+ + DPEK+ A  L
Sbjct: 367 ALLPTLAEAVEKR------QD-LLLERVRQASAEPGDVCLSLAEKLMQQGDPEKMLAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           ++                        D+   F++      +    +   L  G  Q    
Sbjct: 420 KL----------------------LIDEEPDFEMAELPESD-DSMAHLELPAGRLQGIHP 456

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           R L+  +   + ++ Q +G I +  + TFVEV  D +
Sbjct: 457 RQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYI 493


>gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 606

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L   + DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   +            P AL + PTREL +Q+  +L   Y+K    + V    GG S+
Sbjct: 60  PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL 
Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A
Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            ++ +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +
Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345


>gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
          Length = 610

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L   + DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   +            P AL + PTREL +Q+  +L   Y+K    + V    GG S+
Sbjct: 60  PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL 
Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A
Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            ++ +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +
Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 204/367 (55%), Gaps = 16/367 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E GY   T +Q   + P L  +DVL  AQTG+GKT AF L + + L     
Sbjct: 11  PKVL-KAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    +     T +  A+ IGG S   + + +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQDKIIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH+    L ++ +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-------LSDRDNAIVNILR 240
           T++P I  +   +  +  ++ +A     +++I    V+          S++   +  ++ 
Sbjct: 187 TMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEKRELLRKLID 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ ++ V    K L ++ +Q   + G+L Q  R+  L   RD   R+ 
Sbjct: 247 AEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDKFRDNELRIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQ--RR 355
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++ +    
Sbjct: 307 VASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICVPRDEKNLED 366

Query: 356 AERLFRE 362
            ERL +E
Sbjct: 367 VERLVKE 373


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE----- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 70  -AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P   + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPDTHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R       
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR------- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            V    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D   + A  L
Sbjct: 362 KVDRMEAPTLDEALE-GQQRLIAEKL-QSTIENDNLSYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 143/505 (28%), Positives = 247/505 (48%), Gaps = 68/505 (13%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+   Y + T VQE ++   L  KDV+V +QTGSGKTV++G+ L  T+  E ++  
Sbjct: 16  IVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLCETVDWEENK-- 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELA+QV  +L  +     V      G  S   ++ +L+  +HIVVG
Sbjct: 74  ----PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKSELKQKSHIVVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH++     +  +  +VLDEADEML++GF D +E I++  P +R+ L+FSAT+ 
Sbjct: 130 TPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAERQTLLFSATMP 189

Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  +A  Y K D   + I +       I   +V V    ++  ++++L    A + ++
Sbjct: 190 KEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDLLTVENADSCMI 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+ +V+     L +    +  + G + Q++R + +   R GR R  +ATDVAARGID
Sbjct: 250 FCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYLVATDVAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++  V++ ++    E+ +HR+GRTGRAG+ GM++ ++    ++    +   A  +V+ 
Sbjct: 310 IENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNEVKAYAGQTVIE 369

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
              P+          R++Q                                   H+    
Sbjct: 370 VSLPTT---------RLVQS----------------------------------HKTSFG 386

Query: 430 AP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
              +E  P+  V  ++  RD ++ +         F G        G K+K  A   +  +
Sbjct: 387 KKLQERPPLKQVRSKELNRDITKVY---------FNG--------GKKKKMRAVDFVGTI 429

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
            +  GIN   IG I +Q ++T++++
Sbjct: 430 AKIPGINADDIGIITIQENVTYIDI 454


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +  + DR    
Sbjct: 14  KAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNI-DKADR---- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R L     IVVGTP
Sbjct: 69  -SIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L + +LK +VLDEADEMLD+GF DDIE I++  P  R+ L+FSATI  +
Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPAS 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   +  + V V I ++      ++   V     ++ + +  +        A++F  
Sbjct: 188 IMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +ATDVAARG+D+  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  V + ++  +P++ +HR GRTGRAG KG+SV FV P  ++
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349


>gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
 gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
          Length = 457

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL L   +  + 
Sbjct: 10  LPAAQLDNLNELGYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQQI--DA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
             F   S    L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+ 
Sbjct: 68  GLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHP 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPATRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  ++   Q++   + I S +   S I+ +    +   +   +  +L  H  
Sbjct: 183 FSATWPEAIAAISGRVQQNPATIEIDSVDALPS-IEQQFYETSQKGKIPLLQKLLSQHQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+       + L E     +AL G+L Q++R   L    +G ARV +ATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSARVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ +      +RA  L     
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQ 361

Query: 365 VSVVWEPAPS 374
           + + W  APS
Sbjct: 362 LKLNWMSAPS 371


>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
 gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
          Length = 552

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L + S L   
Sbjct: 8   NLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLSLLARG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G 
Sbjct: 68  RAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQEQIIDKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L F
Sbjct: 125 DVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNI 238
           SAT++P I  +   +  +  RV +A +      I+   V+   S RD       N +  +
Sbjct: 185 SATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEKRNVLRKL 244

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +   G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R G  R
Sbjct: 245 IDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLESFRAGDLR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +
Sbjct: 305 FLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMI 355


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 197/346 (56%), Gaps = 12/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +   LL + +   
Sbjct: 12  ILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQNLLPDASTSA 71

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +   L+ G  ++
Sbjct: 72  SPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQTEQLRRGVEVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P  R+ L+FSAT
Sbjct: 132 VATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPAHRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAK- 245
            SP I  LA +Y +    + +A  N    ++  R V+  + D  +  A+V++LR    + 
Sbjct: 192 FSPEIKKLAASYLRHPQTIEVARSNATADNV--RQVIYTVPDGHKQAALVHLLRQRAEQG 249

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +++   SR  + L        A+ G+ +Q ER   L+  + G   V +ATD
Sbjct: 250 LPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGTVDVLVATD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF 346
           VAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G  +S+F
Sbjct: 310 VAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLF 355


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 160/515 (31%), Positives = 263/515 (51%), Gaps = 29/515 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + +   N R     
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKI-DLNQR----- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GA ++VGTP
Sbjct: 74  KPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P 
Sbjct: 134 GRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPM 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + + + ++ V V++A +N     +  +  +V   ++D A+  +L       +IVF  
Sbjct: 194 LKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P 
Sbjct: 254 TRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPR 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +  
Sbjct: 314 ITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQL 373

Query: 370 EPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                V   R      E +A++   +   LD      +K+   L    DP  +AA  L+ 
Sbjct: 374 PLRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKR 428

Query: 424 H---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQK 478
               R      E+  P+     RD+ +      + G     NF    W  + L VG +Q 
Sbjct: 429 QQGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQG 485

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 486 VQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 520


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPKDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + +I       + I+FC T
Sbjct: 192 EKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDITMIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +  E AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKELAP 371

Query: 374 SVEAIRERDA---QRILQDPLF 392
           S E + +  A   ++I   P+ 
Sbjct: 372 SKEEVMKGKAIFEEKIYAKPII 393


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 192/342 (56%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E G+   T +Q+  +   L  KD+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  KTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGK------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL +APTRELA+QV  +L        + V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  SGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI TL + + K    V   +       ID    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +  EN      
Sbjct: 14  KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ + L+    I+VGTP
Sbjct: 72  ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  R+ L+FSAT+ P 
Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L    +    + G+L+Q +RS  +   ++    + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M
Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 151/481 (31%), Positives = 233/481 (48%), Gaps = 31/481 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +  EN      
Sbjct: 14  KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENLNIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ + L+    I+VGTP
Sbjct: 72  ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  R+ L+FSAT+ P 
Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   +     ++ + +  ++        IVF  
Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLIDVQDPDLTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L    +    + G+L+Q +RS  +   ++    + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVW 369
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M      E+L R   + +  
Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPL-- 365

Query: 370 EPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR--IHRA 426
           +P  + EA + + A      D L         ++  + LL  H+   + A  L      A
Sbjct: 366 KPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLVAALLNNMTKEA 425

Query: 427 GLCAPEEITPVSLV-----------------SGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
               P +ITP   +                  G    R + R  + GGG R++  G S  
Sbjct: 426 ASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGGGHRNDNHGKSHS 485

Query: 470 S 470
           S
Sbjct: 486 S 486


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 202/363 (55%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   N      
Sbjct: 35  KSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIINNL-KNNHTIE-- 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    +++ TP
Sbjct: 92  ----ALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATP 147

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FSAT+   
Sbjct: 148 GRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFSATMPEP 207

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + +IVF  
Sbjct: 208 IKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQAPEKSIVFTR 267

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L    ++  AL G++ Q++R  ++   +   A V +ATDVA+RG+D+  
Sbjct: 268 TKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASRGLDISG 327

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  +     
Sbjct: 328 VSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSEIELFEI 387

Query: 373 PSV 375
           P++
Sbjct: 388 PTI 390


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 193/332 (58%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   +F    A
Sbjct: 24  LTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--KF----A 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GAHIVVGTPG
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGAHIVVGTPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+FSAT    I
Sbjct: 138 RIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLFSATYPEGI 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +A E    + I  R   V+  +R +A+  +L ++   + + FC+T
Sbjct: 198 VKLSQQFLRNPKEVKLA-ERHDDTKIRQRFYEVSEDERLHAVGLLLNHYRPVSTLAFCNT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 257 KQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           E VI+ +++ +PE  +HR GRTGRA ++G ++
Sbjct: 317 EAVINVDVTPDPEVHVHRIGRTGRADQEGWAL 348


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +  EN      
Sbjct: 14  KAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ + L+    I+VGTP
Sbjct: 72  ----AIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  R+ L+FSAT+ P 
Sbjct: 128 GRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +   +  D   V I ++      +D   V     ++ + +  ++        IVF  
Sbjct: 188 IKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +K L    +    + G+L+Q +RS  +   ++    + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + ++ S+P++ +HR GRTGRAG  G+S+ FV P  M
Sbjct: 308 VTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEM 348


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 8/350 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q  ++   L   DV+  A+TG+GKT +F + +   L  E      A 
Sbjct: 26  ALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILELLDIERG----AP 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  E+  L     +  A   GG  +  +   L+ G H+VVGTPG
Sbjct: 82  TPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKKGCHVVVGTPG 141

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    ++ +H++ VVLDEAD MLD+GFR DIE IL   P++R+ L+ SAT+ P I
Sbjct: 142 RVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLLLSATVPPPI 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   +N +  +     I+ +   V    + + ++ +L     K AIVFC T
Sbjct: 202 AKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLREEPKQAIVFCRT 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  + L + L    A+ G+LSQ +R   +   RDG  R  +ATDV  RGID+  +
Sbjct: 262 KRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDVIGRGIDVSTV 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP---QNMQRRAERL 359
             +++ ++    ++ +HR GRTGR GR+G++  FV P     + R  ER+
Sbjct: 322 SHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERI 371


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 190/332 (57%), Gaps = 9/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEKLSVKRFRIQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             +L + PTRELA QVG+EL  L A+T   + V    GGV    +   L++GAHI+VGTP
Sbjct: 75  --SLILCPTRELADQVGKELRRL-ARTIHNIKVLTLCGGVPFGPQIGSLEHGAHIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   L +  L+ +VLDEAD MLD+GF+  I+ I+D +PKKR+ L+FSAT    
Sbjct: 132 GRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKRQTLLFSATFPEK 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK    D + V   S++       +   +    DR  A+  +L+ +  ++++VFC+
Sbjct: 192 INNIAKRIMTDPIMVKAESKHDDSVIAQHFYKVENSQDRMIALRLLLQKYQPESSVVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      LA   F  +AL G+L Q++R  AL    +  A + +ATDVAARG+D+ +
Sbjct: 252 TKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVATDVAARGLDIDN 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           L  V +  ++ + E  +HR GRTGRAG KG++
Sbjct: 312 LSAVFNYHIAHDQELHVHRIGRTGRAGNKGLA 343


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +  + DR    
Sbjct: 14  KAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPILQNI-DKADR---- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R L     IVVGTP
Sbjct: 69  -SIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L + +LK +VLDEADEMLD+GF DDIE I++  P  R+ L+FSATI  +
Sbjct: 128 GRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPAS 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   +  + V V I ++      ++   V     ++ + +  +        A++F  
Sbjct: 188 IMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +ATDVAARG+D+  
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  V + ++  +P++ +HR GRTGRAG KG+SV FV P  ++
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIE 349


>gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
          Length = 609

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 14/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L   + DV+  AQTG+GKT A+GL
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
            +   +            P AL + PTREL +Q+  +L   Y+K    + V    GG S+
Sbjct: 60  PILQKINVSQ------YQPQALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL 
Sbjct: 113 ESQIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A
Sbjct: 173 AIPENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            ++ +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +
Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 345


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 159/525 (30%), Positives = 255/525 (48%), Gaps = 44/525 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q   +   +  +DV+  AQTG+GKT AFG+ +   +        P 
Sbjct: 17  KAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIPILEAV-------DPR 69

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           S  L AL + PTRELA+QV  EL  L   K  + V    GG  + R+ + L+ G  IV+G
Sbjct: 70  SHDLQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKALRQGVQIVIG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L +  ++ VVLDEADEMLD+GFR+DIE ILD  P++R+ + FSAT+ 
Sbjct: 130 TPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEERQTIFFSATMR 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA+ Y      V ++ +     +++     V    R  A+  I+ ++  K  +VF
Sbjct: 190 PEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIIDFYNPKLTVVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+  V    + L    +    L G+++Q +R   +   R G   + IATDVAARGID+
Sbjct: 250 ANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIEILIATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+E V + ++ S+ E  +HR GRTGRAGR G +          +   + R     +V  
Sbjct: 310 EDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKLRDIQRFTKAKIVQH 369

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG----FLRIHRA 426
             P+V  + +   ++      FL +++                E IA G    +LRI + 
Sbjct: 370 KVPTVTDVEQARTEK------FLAAVR----------------ETIAEGGIDKYLRIAQE 407

Query: 427 GLCAPEEITPVSLVS-------GRDRFRDDSR-AFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            +   +E T + L +       G     + S+    V  G      G     ++VG + K
Sbjct: 408 FVEEEQEATTLDLAAALLKMLMGTTEEPEKSKPGTPVKYGDTGAEPGMVRLFMNVGRRLK 467

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLLR 522
              + ++  +   +G+  + IG I +    TFVEV  +   D+LR
Sbjct: 468 IGVKDVVGAIAGETGMPGRLIGKIEIYDKFTFVEVPEEYAEDVLR 512


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 236/434 (54%), Gaps = 30/434 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +      A   +
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQGI 55

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ DH
Sbjct: 56  VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A+
Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  +   + + ++     +I    + V    + + +  +L     + AIVF  T+  V 
Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVD 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVYN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANVSVVWEP 371
            ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R        V    
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKR-------KVDRME 348

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           AP+++   E   QR++ + L   +IQ +     K++ + +L ++D   + A  L++    
Sbjct: 349 APTLDEALE-GQQRLIAEKL-QSTIQNENLSYYKRIAEEMLEENDSVTVVAAALKM---- 402

Query: 428 LCAPEEITPVSLVS 441
           +    + TP++L S
Sbjct: 403 MTKEPDTTPIALTS 416


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 90  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 206

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 324 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 382


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V+V     + Q   I Y    ++   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQIVKVEALHADSQIEQIFYE---ISPEQRLEAVVKVLGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLDQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 170/554 (30%), Positives = 281/554 (50%), Gaps = 44/554 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS+ GY + + +Q A + P L  KDV+  AQTG+GKT AF + + S +     +    
Sbjct: 24  KALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLSRIDTSIKQTQ-- 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL +APTRELA+QV        A   G+ V    GG S   +   L+ GAH+VVGT
Sbjct: 82  ----ALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGLRRGAHVVVGT 137

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++++LK +VLDEADEML +GF++D+E IL  +P  +++ +FSAT+  
Sbjct: 138 PGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQVALFSATMPG 197

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  ++K Y  + V + + S+    S+I  R + VA   + +A+  +L     +  I+F 
Sbjct: 198 SIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEVEAFEAMIIFV 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L        A++G++ Q +R   +  +++G   + +ATDVAARG+D+ 
Sbjct: 258 RTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVATDVAARGLDVD 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREANVSVV 368
            +  V++ ++  + E+ +HR GRTGRAGR+G + +FV P  +++ +  E+  R+    + 
Sbjct: 318 RISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEKATRQPLAEMQ 377

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAA 418
               PSV+ +   +AQR+ +   F DSI            +KM++    +HD     IAA
Sbjct: 378 L---PSVDDV---NAQRVAK---FGDSITESLASENLAMFRKMIEDYDQEHDVPLIDIAA 428

Query: 419 GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---NFKGSSWFSLSV 473
                 R G       E           R     R F  G   R      +  + + ++V
Sbjct: 429 ALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAAYRIAV 488

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDK 529
           G + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT     
Sbjct: 489 GKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRTRISGV 548

Query: 530 GIQLKYLGGEKPDF 543
            IQL      +PDF
Sbjct: 549 LIQL------QPDF 556


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 204/366 (55%), Gaps = 20/366 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+ +    A+  +G+   T +Q  ++   L  EK+++  A+TGSGKT +F L L   +  
Sbjct: 12  NLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPLIELI-- 69

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +      A+ + PTRELA+QV  E+  L     + +    GG  +  + + L+N 
Sbjct: 70  -----NEGEGIKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIKYLKN- 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+  ++  +LDEADEML++GF DD+E IL++  K RR+L+
Sbjct: 124 ANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNRRILL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           FSAT+   I  LAK Y  D   V      ++++DI+   + V  + R   +  ILR   +
Sbjct: 184 FSATMPVEILNLAKKYMNDYEFVRA----KRNADIEQTFIEVDENKRFETLCRILRDRNF 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VFC T+        +L +  F+  A+ G+L Q +R   +++ +  R ++ IAT
Sbjct: 240 YG----LVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKILIAT 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV +RGID+ DL  V++  L   PE  +HR GRTGRAG+KG ++ +I +   R+ + + R
Sbjct: 296 DVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKHIER 355

Query: 362 EANVSV 367
              + +
Sbjct: 356 TMKLKI 361


>gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 629

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++    +GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
          Length = 786

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 137/436 (31%), Positives = 227/436 (52%), Gaps = 59/436 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  ++
Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           ++ +        P  L +APTRELA QV +E++        +  VC+ GGVS   ++  L
Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIK---ESAPYLSTVCVYGGVSYITQQNAL 239

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I+G  L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+
Sbjct: 240 SRGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQ 299

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIAS----------------ENRQH-SDID---- 220
            ++FSAT+   +  LA+ Y  + + +++ +                +   H  D D    
Sbjct: 300 SMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLA 359

Query: 221 -----YRAVLVALSDR----DNAIVNILR-----------YHGAKNAIVFCSTRASVSRF 260
                Y     A S R    D    NI++           Y      IVF  T+      
Sbjct: 360 EGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKRDADEV 419

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL----- 315
           +  L   +    AL G++SQ +R   L   R G+  V +ATDVAARG+D+P+++L     
Sbjct: 420 SMALTNSIAS-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDL 478

Query: 316 ----VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
               +IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  + L R+      +  
Sbjct: 479 LFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFIS 538

Query: 372 APSVEAIRERDAQRIL 387
            P++E + E  A++++
Sbjct: 539 PPAIEEVLESSAEQVV 554


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 127/331 (38%), Positives = 187/331 (56%), Gaps = 8/331 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----SPASAP 75
           Y+  T VQ+  +   L ++D++  AQTGSGKT AF L + ++++   D+     S   AP
Sbjct: 243 YLKPTPVQKYAIPIILGDRDLMSCAQTGSGKTAAFLLPVLASIMQHKDQLTSQLSEVQAP 302

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L L IAPTRELA Q+ +E      +T V   V  GGVSV  + R +Q+G H++VGTPGRL
Sbjct: 303 LGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAYQLRQVQSGCHLLVGTPGRL 362

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191
            D I  + +++ +LK +VLDEAD MLD+GF  D++ I+      + + R  LMFSAT   
Sbjct: 363 KDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGFGMPAKEDRHTLMFSATFPE 422

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  +  + V + I      HSDI+   + V  + + + +V +L   G    +VF 
Sbjct: 423 EIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEVDNASKRDKLVEMLGQEGGNKNLVFV 482

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L ++ F   ++ G+  QQ+R  AL+  R G+  V IAT VAARG+D+ 
Sbjct: 483 QTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREFRAGQQTVLIATAVAARGLDIA 542

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D++ VI+ +L    E  +HR GRTGR G KG
Sbjct: 543 DVKQVINYDLPDEIEEYIHRIGRTGRIGNKG 573


>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
 gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
          Length = 459

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 211/390 (54%), Gaps = 16/390 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+  +T +Q   L   L  +DV+  A+TGSGKT AFGLAL   L  +  R      
Sbjct: 18  LQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV  E+  L      + V    GG  +  +   L++GAHI+VGTPG
Sbjct: 74  --ALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQIGSLEHGAHIIVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+  + L++S +  +VLDEAD MLD+GF D+++ ++ S P++R+ L+FSAT   +I
Sbjct: 132 RIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPEQRQTLLFSATYPDSI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFC 251
             ++   QK  + V + S    H       V   + D  R  A+  +L ++  ++AIVFC
Sbjct: 192 AAISGQVQKSPLEVTVES---THDTDTIEQVFFEVEDAHRTKAVAALLSHYQPESAIVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +       L      V+AL G+L Q+ER+  L    +  A V +ATDVA+RG+D+ 
Sbjct: 249 NTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVLVATDVASRGLDIK 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++  VI   ++ +PE  +HR GRTGRA  KG+++ ++  +   RA  +       + W  
Sbjct: 309 EVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANAIEDYQKAKLKW-- 366

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEK 401
              ++A+R   A R++Q       + G +K
Sbjct: 367 -TGIQAMRFH-ANRLIQPQYSTLCVDGGKK 394


>gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
 gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
          Length = 627

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLSKR 382


>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
 gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
          Length = 645

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 202/340 (59%), Gaps = 10/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY + + +Q+A +   +  +D++  AQTG+GKT AF L L +       R  P  
Sbjct: 99  AVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLA-------RLDPQQ 151

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P  L + PTRELA+QV        AK   V  + I GG     +   L+ G  IVVGT
Sbjct: 152 RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIVVGT 211

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E++L+  P++R++++FSAT+  
Sbjct: 212 PGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLFSATMPS 271

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L++ Y ++   V I  +  ++S I  R ++V  + +  A+  +L    ++  I+F 
Sbjct: 272 EIRRLSRKYLQNPAEVTIQQKGAENSTIRQRHLVVHGAQKLEALTRVLEAESSEGVIIFA 331

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A     ++ L +  + V  L+G++ Q +R   ++ +R G+  V +ATDVAARG+D+ 
Sbjct: 332 RTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGLDVD 391

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR+G ++ F+ P+
Sbjct: 392 RITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPR 431


>gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88]
          Length = 629

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + +++ K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 12/387 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           I   +P      L E GY+++T VQ A L   L  +DV V A+TGSGKT AFGL L   +
Sbjct: 6   ILNVLPAAQLANLRELGYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLGLLQHI 65

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRD 120
             +   F   S    L + PTRELA QV  EL  L        ++ +C GG     +R  
Sbjct: 66  --DAALFKTQS----LVLCPTRELADQVAGELRRLARSMPNTKILTLC-GGQPFGAQRDS 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R
Sbjct: 119 LQHAPHIIVATPGRLLDHLQKGTVSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFAPASR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   AI  ++   Q+D V + I + +   + I+ +    +   +   +  +L 
Sbjct: 179 QTLLFSATWPEAIAAISARVQRDPVTIEIDAVDALPA-IEQQFFETSTQGKIPRLQTLLS 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + +VFC+T+         L       +AL G+L Q+ER   L    +G ARV +A
Sbjct: 238 LHQPASCVVFCNTKKDCQAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSARVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           TDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG +G+++ F  P   Q RA  L
Sbjct: 298 TDVAARGLDIKALELVVNFELAWDPEVHVHRIGRTARAGNRGLAISFCAPAEAQ-RANIL 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386
                +++ W  AP+  AI+  +A+ +
Sbjct: 357 AEMLQLTLNWCDAPTNMAIKPLEAEMM 383


>gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 372

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 195/348 (56%), Gaps = 13/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + L E    N T +QE ++ P L E   D++  AQTG+GKT AFGL +   +    D+  
Sbjct: 15  KGLKELNIKNPTEIQETVI-PILLESNTDLIGLAQTGTGKTAAFGLPVLHAI----DK-- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             S   AL IAPTREL  Q+ ++L     Y    +      GG  + R+ + L    HIV
Sbjct: 68  NKSEVQALIIAPTRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMDRQIKALTRATHIV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    ++IS++K +VLDEADEML +GF++D+  IL  + KKR   +FSAT
Sbjct: 128 VATPGRLLDLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKYNTKKRNTWLFSAT 187

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +   I ++ KNY   DAVRV +      + +I +  +   + D+ N ++ IL     +  
Sbjct: 188 MPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIKDKLNMVIRILEKRQDERG 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+A      + L    F V AL G++ Q+ER   ++  ++   ++ ++TDV+ARG
Sbjct: 248 IIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNESLQILVSTDVSARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+ DL  V+H +L  + +   HRSGRT RAG+ G S+  +IP  MQ+
Sbjct: 308 IDVRDLSFVLHHQLPEHLDYYTHRSGRTARAGKTGQSIALIIPGEMQK 355


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 6/366 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S   +  LT VQE ++   L EKD++V ++TGSGKT ++ + +   +  E ++    
Sbjct: 17  KAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQLVDWEENK---- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL I PTRELA+QV  +   +     +  A   G  S + + ++L+   HIVVGTP
Sbjct: 73  --PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQKTHIVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI     ++S +K +++DEADEML++GF + IE I+ S  K+R  ++ SAT+   
Sbjct: 131 GRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTMLLSATMPKD 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TL   Y KD + + I  +N+   +I      V   ++ + + +I       + ++FC+
Sbjct: 191 IETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDLLRDITILENPDSCMIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    K LA+  +    + G + Q +R   +   + G  R  IATDVAARGID+ +
Sbjct: 251 TKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  + E+ +HR GRTGRAG+ G ++  + QN  +    +       +  +  
Sbjct: 311 ITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIHEYIGKEIPLKER 370

Query: 373 PSVEAI 378
           P VE +
Sbjct: 371 PKVETV 376


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 196/345 (56%), Gaps = 15/345 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL +   +  +  +F   S 
Sbjct: 18  LNELGYHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLGVLHRI--DVTQFVTQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV +EL  L  +A    ++ +C GG  +  +R  L +  HIVVGTP
Sbjct: 75  ---LVLCPTRELADQVAKELRRLARFAANIKILTLC-GGQPMGAQRDSLVHAPHIVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++ + L +  +  +VLDEAD ML++GFR+DIE I+   P  R+ L+FSAT    
Sbjct: 131 GRILDHLKRETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYCPASRQTLLFSATWPQD 190

Query: 193 ITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I  +++N Q++  AV  ++ S+      ID R       ++  A++ +L      + +VF
Sbjct: 191 IARISQNIQREPVAVETDVVSD---LPTIDQRFYEAGAREKLTALIGLLSDEKPSSCVVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L       +AL G+L Q++R   L    +G  RV +ATDVAARG+D+
Sbjct: 248 CNTKRECDDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCRVLVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
             L +V++ +LS +PE  +HR GRT RAG +G ++ FV P  M R
Sbjct: 308 KSLAMVVNYQLSFDPEVHVHRIGRTARAGAEGCAISFVAPDEMVR 352


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 185/334 (55%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q+  + P L  +DVL  AQTG+GKT AF L +   L A         
Sbjct: 15  AVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILHRLSAGRSPPPAQG 74

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+  L + PTRELA Q+    +     TG+  AV  GGV  H + + L+ G  +++ TP
Sbjct: 75  RPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQTLRRGVDVLIATP 134

Query: 133 GRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D + G+GL +   L+  VLDEAD MLD+GF  D++ I+ + P KR+ L FSAT+ P
Sbjct: 135 GRLLD-LMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPPKRQTLFFSATMPP 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA+   K  VRV +  E+     ++ +   V    + + +V++L     + A+VF 
Sbjct: 194 EIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHLLGDASIRRALVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  K LA       A+ G  SQ  R  AL   +DG  RV +ATD+AARGID+ 
Sbjct: 254 RTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVLVATDIAARGIDIE 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  VI+ +L + PE+ +HR GRTGRAG  G ++
Sbjct: 314 GITHVINFDLPNIPESYVHRIGRTGRAGAVGTAL 347


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 203/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAI 378
            P+  +I
Sbjct: 369 LPANSSI 375


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 194/348 (55%), Gaps = 10/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I +AL +  +   + +Q   +   L  +D +  AQTG+GKT AF L +       
Sbjct: 12  NFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPILQ----- 66

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
             + +P      AL +APTRELA+QV  + E L A+  G  VA   GG    R+ + L+ 
Sbjct: 67  --KITPNGQGTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLRA 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVVGTPGR+ DHI    L +S+L+  +LDEADEML +GF +DIE I+   P+++++ 
Sbjct: 125 GAQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQIG 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +A  Y  +   + I SE      I+ R +  +   + +A+V +L    
Sbjct: 185 LFSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFLFASGHQKPDALVRVLAVEE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T++S     ++L +   + +A+ G+++Q  R   +   R G   + +ATDV
Sbjct: 245 YQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+  +  VI+ +L  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 305 AARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPK 352


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 227/465 (48%), Gaps = 15/465 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL +   L    D   
Sbjct: 12  ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ RDL+    I+VG
Sbjct: 68  QEQAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIRDLKKVPEILVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  + + L+FSAT+ 
Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + +  D   V I ++      ID   V V  +++ + +  ++       A+VF
Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +ATDVAARG+D+
Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367
             +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +   R  E L ++    +
Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 367

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIH 424
              P    +A   +  Q +L+     D + GD  K  D    LL  +  E IAA  L+  
Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLKEL 422

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
                    ITP +    R +                NFKG   F
Sbjct: 423 SNDSEVKVTITPENPHPYRGKHSGGRGRGSRSRSGNKNFKGKRNF 467


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 200/371 (53%), Gaps = 6/371 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L+  GY   TS+Q+ ++ P L  K+V+V A TGSGKT AF + +   +  E +   
Sbjct: 14  ILESLNGLGYKEPTSIQQEVILPMLAGKNVVVKAPTGSGKTAAFAIPICENICWEEN--- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + PTRELAVQV  E+ ++  K  + V    GG  + ++ + L+  +HIV G
Sbjct: 71  ---APQALILEPTRELAVQVSEEMFYIGRKKRLKVPALFGGFPIDKQIQTLRQKSHIVTG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  + LN+  ++ +V+DEAD MLD+GF D+++ IL   P   R+ +FSAT+ 
Sbjct: 128 TPGRIMDHLGRESLNLEKVRWLVIDEADLMLDMGFIDEVKKILSMVPTDCRISLFSATLK 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  L   +  D   V  ++ N Q + I  +       ++ +  + IL     ++ ++F
Sbjct: 188 PEIQELVDEFIPDMTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILINENPQSCMIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR   +   + L         L GE+ Q+ER   +   R G  R  IATDVAARGID 
Sbjct: 248 CGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDVAARGIDF 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V++ +  S  E  +HR GRTGR G+ G ++ ++ +  +R   ++   A   + + 
Sbjct: 308 EQITHVVNYDFPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQVEEYAGRQLPFT 367

Query: 371 PAPSVEAIRER 381
             P ++  +E+
Sbjct: 368 ELPVLDEEKEK 378


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 206/373 (55%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 ITAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 199/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P  +   L   G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L  + R +P S    L +APTRELA Q+   L      T V VA+ +GG S++ + 
Sbjct: 61  VAQMLELDGRPAPKSV-RGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  LA +Y +  +RV ++   +    +      +A S++   ++ +
Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKSALLIEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  +   ++ G  SQ +R  A+   + G  +V 
Sbjct: 240 LDKHREERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAG+ G ++ F  P  M
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 668

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 142/400 (35%), Positives = 218/400 (54%), Gaps = 14/400 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           +K FE   + + I  A+SE G+ +   VQE ++ P L     DV+  AQTG+GKT AFGL
Sbjct: 36  LKTFEELGVSEEIRRAISELGFEHPMPVQEEVI-PYLLGNRNDVIALAQTGTGKTAAFGL 94

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            L    L   D  S  +   A+ ++PTREL +Q+  +L ++      + +A   GG S+ 
Sbjct: 95  PL----LQRIDTGSKDTQ--AVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIE 148

Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L++G  I+V TPGRL D + RGK   +  +  VVLDEADEML++GF++ I  IL 
Sbjct: 149 TQIHQLRHGVQIIVATPGRLIDLMHRGKA-RLDKVTNVVLDEADEMLNMGFQESITEILT 207

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A
Sbjct: 208 GVPEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLA 267

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R   
Sbjct: 268 LKRLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHL 327

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + 
Sbjct: 328 TQILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKH 387

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +   + RE     V    P+ E I ++   + + D L  D
Sbjct: 388 KVRNIEREIGKEFVDGTLPTPEEICKKQLFKTMDDILKTD 427


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 201/339 (59%), Gaps = 9/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +RG   L  +Q+A+L P +  +DV+  A+TG+GKT+AF L +   LL+        
Sbjct: 38  QALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIEKLLSNGRGSGGR 97

Query: 73  SA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  + +APTRELA QV  E+ ++ A T +  A   GG  + ++   L+ G  IVVG
Sbjct: 98  GYRNPKCIVLAPTRELAKQVENEI-FITAPT-LDTACVYGGTPIGQQESKLRRGVDIVVG 155

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +  + L++S ++ VVLDEAD+ML++GF +D+E IL   P  R+  +FSAT+ 
Sbjct: 156 TPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFLFSATMP 215

Query: 191 PAITTLAKNYQK-DAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKN 246
             +  + K + K   V V++  +N+Q     ID     V+ + R + +++++  Y   K 
Sbjct: 216 QWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMDLVTVYAKDKK 275

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I F  T+ +    T  L + +   V L G+++Q +R   LQ  RD R  V IATDVAAR
Sbjct: 276 CICFTQTKRAADELTAALGKRVSCEV-LHGDIAQAQRERTLQRFRDNRFTVLIATDVAAR 334

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+ D++LVIH EL ++ E+ +HR GRTGRAG++G ++
Sbjct: 335 GLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAI 373


>gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 205/387 (52%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L   + DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGDDNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   +            P AL + PTREL +Q+  +L   Y+K    + V    GG S+
Sbjct: 60  PILQKIDV------TTYQPQALVLCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G H+VV TPGRL D +  K +N+S +K V++DEADEML++GF D I  IL 
Sbjct: 113 ESQIKTLKRGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R ML+FSAT+   I  + K Y K+   + I ++N  + +I     +V   D+  A
Sbjct: 173 EVPENRNMLLFSATMPKEIAAITKRYMKNPKEIVIGNKNEGNKNIRDIYYMVRAQDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I  ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+S+ +     + 
Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
           +   + R  N        PS  AI E+
Sbjct: 353 KIREIERIINKKFEKGEIPSGSAICEK 379


>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 652

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +   +   + R  P+ 
Sbjct: 34  AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERI--PDGRRKPS- 90

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+QV  E+  L     + V    GG S+  +   L+ GA IVVGTPG
Sbjct: 91  ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   + L+FSAT+   I
Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250
             +  +Y  D   + ++ +  +  +I+   V+    D      N+L   G +    AI+F
Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +ATD+AARGID+
Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  VI+  L  +P   LHR GRTGR G+KG S+ ++
Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 219/397 (55%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L        ++ +P 
Sbjct: 16  KAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLV-------EKINPE 68

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 69  SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + L ++++  VV+DEADEML++GF +DIE IL + P + + L+FSAT+  
Sbjct: 129 PGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEHQTLLFSATMPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 189 PIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFG 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+Q +R  AL+  + G   V +ATDVAARG+D+ 
Sbjct: 249 RTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDIS 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R         
Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR--------- 354

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++I+G ++  VD L
Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEAIEGQQQVTVDRL 387


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 140/394 (35%), Positives = 209/394 (53%), Gaps = 18/394 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 19  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 72  VTQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 131 PGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLFSATYPV 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q+  V V +  +  +   I+          R   ++ +L ++   + +VFC
Sbjct: 191 GIERISARVQRQPVNVEV-EDGDEEPAIEQVFFETTREKRLPLLIAVLSHYQPASCVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 250 NTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL LV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 310 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMA-RAHAIEDYLQIKLKWT 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PA  V     R    +L+  +    I G  K  +
Sbjct: 369 PAEQV----SRSTNAMLEPEMVTLCIDGGRKAKI 398


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/520 (30%), Positives = 262/520 (50%), Gaps = 31/520 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L + + +     +     
Sbjct: 20  ALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLSQHK----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGTP
Sbjct: 75  -PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNGAHIVVGTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P   + ++FSAT+ P 
Sbjct: 134 GRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPI 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFC 251
           +  +   + +   R+++A ENR  S +  +  +V   ++D A++ +L      +A IVF 
Sbjct: 194 VKQIVDRFLRSPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEENIDASIVFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+    +  AL G++ Q  R   +  ++ G   V +ATDV ARG+D+ 
Sbjct: 254 RTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDVVARGLDVQ 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368
            +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N   M R  ER+ +     + 
Sbjct: 314 RITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVTKSRMEEIQ 373

Query: 369 WEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
                +V A R      E ++Q+          + G  ++ ++V     D   +AA  L+
Sbjct: 374 LPNRDAVAAARLTRLGQELESQKEQATLEAFVELVGKLQETINV-----DAPTLAAMLLQ 428

Query: 423 IHRAG----LCAPEEITPV---SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
             +         P+ +             R  DD  +    GG R +   + W  + L V
Sbjct: 429 RQQGNRPLFYKGPDPMIAAIEREQQRRERRGNDDRGSRNERGGERRSNNSADWDTYQLQV 488

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           G +Q  + + ++  +    G++++ IGAI++ P  TFV++
Sbjct: 489 GREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQL 528


>gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933]
 gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
 gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           G5101]
 gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str.
           493-89]
 gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H
           2687]
 gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125]
 gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044]
 gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
          Length = 629

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 629

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. EDL933]
 gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. Sakai]
 gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 187/351 (53%), Gaps = 11/351 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +LS  G+   T +Q   +   L  +DVL  A TG+GKT AF L L      + +      
Sbjct: 18  SLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQRYCLDTE----PG 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL +QV   +      +GV V    GG    R+ + L  G  IVV TPG
Sbjct: 74  KPQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DHIR   LN++ +KAVVLDEADEMLD+GF +D+E I  + P+KR+  +FSAT+ P I
Sbjct: 134 RALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKI 193

Query: 194 TTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +A+N+  DA  + I  E     +   +   A +V  + +  A+  IL     + AIVF
Sbjct: 194 AKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPRLAIVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V    + L    + V  L G L Q +R   ++  R  +  V +ATDVAARGID+
Sbjct: 254 ARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
             L  VI+  + S+ E  +HR GRTGRAGR+G ++ +    ++ R  RL +
Sbjct: 314 DHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITI----LEPRESRLLK 360


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 197/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 11  PKVL-KAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILR 240
           T++P I  +   +     RV +A +     +I    VL   S RD         + +++ 
Sbjct: 187 TMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R  
Sbjct: 247 QEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGSLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKD 360


>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 584

 Score =  216 bits (550), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 164/548 (29%), Positives = 264/548 (48%), Gaps = 58/548 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72
           A++E GY   T +Q   +   L   D++  AQTG+GKT AF L          +R  P A
Sbjct: 16  AITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTI-------ERIDPKA 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELAVQV   +        +      GG  + R+ R L+ G +IV+GTP
Sbjct: 69  MGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRGVNIVIGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    L++S ++ VVLDEADEML++GF DDIE+IL+ +PK R+  ++SAT+   
Sbjct: 129 GRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTALYSATMPDE 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y +    V I  E      I      +   D+   +  IL      +AI+FC 
Sbjct: 189 IARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILDLEMPTSAIIFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A V    + L    +    L G+LSQ  R   ++  R+ +  + +ATDVAARG+D+  
Sbjct: 249 TKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVAARGLDIEH 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  +PE  +HR GRTGRAGR G++V ++    +R+   + R     +     
Sbjct: 309 VSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIERMTGAPIQRLRL 368

Query: 373 PSVEAI--RERDA-QRILQDPLFLDSIQGDEKK---MVDVLLAKHDPEKIAAGFLRIHRA 426
           P++  +  R R+A +  L++ +   + QG  ++   + + L  ++ P  +AA   ++   
Sbjct: 369 PTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYSPTDLAAAAFKMM-- 426

Query: 427 GLCAPEEIT--PVSLVSGRDRF-------------------------------RDDSRAF 453
            L  P+     P+ +V     F                               R   RA 
Sbjct: 427 -LGEPDLTAEDPLEMVEDEATFDARRGDRRDSRDNGRRGDRRDNGRAGERPGERGGDRAA 485

Query: 454 K--VGGGSRDN----FK--GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
           +    GG R+N    F+  G +   + +G +Q      ++  +   SG+  ++IGAI + 
Sbjct: 486 RGPRSGGDRNNGGRSFREEGMTRLFVDIGREQGVRPADIVGAIANESGLPGRAIGAIDIF 545

Query: 506 PDLTFVEV 513
            + TFV+V
Sbjct: 546 DNFTFVDV 553


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++  C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTSC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 646

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 34  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
 gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
          Length = 391

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 9/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GYV  T VQ   +   +  KDV+  A TG+GKT AFG+ +        +   P S
Sbjct: 26  AIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMV-------EHIDPES 78

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             +  L +APTRELA+Q+  EL  L A K GV      GG  + ++   L+    IVV T
Sbjct: 79  RDVQGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKKDPQIVVAT 138

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + + +  ++ VVLDEAD MLD+GF  D+  ILD  PK+R + +FSATIS 
Sbjct: 139 PGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLGLFSATISR 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  ++  YQ+D V + + ++     DI    + V  +++ + +V ++   G    I FC
Sbjct: 199 EVMDISWVYQRDPVEITVRADEENKPDITQYRLDVERNEKVDTMVRLMEMGGYDRVIAFC 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+    R   +L        A+ G++ Q+ R   LQ  R+G+ RV  ATDVAARG+D+ 
Sbjct: 259 NTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAATDVAARGLDID 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D++ V + ++    E  +HR GRTGRA R G++  ++
Sbjct: 319 DVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLV 355


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L L +       
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLGQR------ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGT
Sbjct: 74  -KPQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P
Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L       +IVF 
Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367


>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 418

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 186/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E GY   T +Q   +   L+  D+L  AQTG+GKT AF + +   LL+EN  + 
Sbjct: 12  ILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPILQ-LLSENKVYD 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+G         TG+   V  GGV+ + +   L  G  IV+ 
Sbjct: 71  KKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAALIRGVDIVIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L++ H++ +VLDEAD MLD+GF  DI+ IL   PK+++ L FSAT+ 
Sbjct: 131 TPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQKQSLFFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA     +  +V++   +     I+     V   ++++ +V+ILR    K A+VF
Sbjct: 191 AEIVKLAATILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKNSLLVDILRDQAIKTALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L +H  +  A+ G  +Q  R  AL   +    RV +ATD+AARGID+
Sbjct: 251 TRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRVLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DLE VI+ E+ +  E  +HR GRTGRAG KG ++
Sbjct: 311 DDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTAL 345


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 461

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 193/345 (55%), Gaps = 2/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   I  AL E GY   T +Q   +   L   D++  AQTG+GKT AF L +   L+  
Sbjct: 8   NLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPVLQKLMPF 67

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   SPA  A  AL + PTRELA+QV   ++     + +   V  GGV +  +   L+ 
Sbjct: 68  ASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKTQTPHLRA 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF  D++ IL   P++R+ L
Sbjct: 128 GIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPRQRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT S  I  L+  +  +   + +A  N    ++  +  LV   ++   + ++LR  G
Sbjct: 188 MFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVYLVGHEEKHALLAHLLRGTG 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   +VF  T+ + SR  + L    F   A+ G+ SQ ER  AL   + G+  V IATDV
Sbjct: 248 AVQTLVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKITVLIATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L +VI+ E+ S  E+ +HR GRTGRAG  G+++ ++
Sbjct: 308 AARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLV 352


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 199/366 (54%), Gaps = 8/366 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 16  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 71

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 72  --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 130 RIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPARQTLLFSATYPDGI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L ++   + I FC+T
Sbjct: 190 AKLSQQFLRNPKEVKL-DERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 249 KQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P  
Sbjct: 309 EAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQAQKRDVEWHPLA 368

Query: 374 SVEAIR 379
            ++A R
Sbjct: 369 ELKADR 374


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 237/439 (53%), Gaps = 26/439 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L   +    D          +
Sbjct: 2   GFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTSKDVIQ------GI 55

Query: 79  AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            IAPTRELA+QV  EL  + Y K   V+++  GG  ++R+ R L+   HI+VGTPGR+ D
Sbjct: 56  IIAPTRELAIQVSEELYKIGYGKRARVLSIY-GGQDINRQIRALKKPPHIIVGTPGRVLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI+ K L + ++   +LDEADEML++GF +DIE IL S P +R+ L+FSAT+   I  +A
Sbjct: 115 HIKRKTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + +D   + + ++      I+   V V    + + +  +L     + AI+F  T+  V
Sbjct: 175 ERFMRDPQIIRVKAKEMTVPLIEQFYVEVQERTKFDVLTRLLNIQSPELAIIFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    F    + G+LSQ +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSVVWEPAPS 374
           + ++  +PE+ +HR GRTGRAG++GM++ F+ P+     A  ER  +     +V  P   
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKMGKMV--PPTL 352

Query: 375 VEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
            EA+  +++ A   +   +  ++++ + K+  D LL +HD   + A  L++    L    
Sbjct: 353 AEALEGQQKAAVDKISQAISANNLE-NYKEAADELLEQHDASDVVAAVLKL----LTKEP 407

Query: 433 EITPVSLV------SGRDR 445
           + TPV L       S RDR
Sbjct: 408 DDTPVKLTEEKPLPSKRDR 426


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 590

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 274/541 (50%), Gaps = 51/541 (9%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFG 55
           M  FE +   P+++ +A+ E G+V  T++Q+  + P L   ++D++  AQTGSGKT AFG
Sbjct: 1   MLTFEELGLKPEIL-KAILEIGFVEPTAIQQKTI-PHLLNTKQDLIALAQTGSGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVS 113
           L + + + +++ +        +L + PTRELA+Q+  +      Y+K   VV V  GG S
Sbjct: 59  LPVINQIDSDSKKTQ------SLVLCPTRELAIQIANDFNSYTKYSKKLDVVPVY-GGAS 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + + L  G  IVVGTPGR+ D I+ K L +  ++ VVLDEADEML++GF+DD++FIL
Sbjct: 112 IETQIKALNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFIL 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             +P +R+ L+FSAT+S  +  ++ NY      ++    N+    +++   +V   D+  
Sbjct: 172 SHTPDQRQTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEHFYFVVNGRDKYL 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+  I   +    AI+FC T+      +  L    +    L G+LSQ +R   +   R  
Sbjct: 232 ALKRIADINPDIYAIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKK 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVAARG+D+ ++  VI+  +  + E   HRSGRTGRAG+ G+S+ +I     
Sbjct: 292 NLQMLVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDI 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKH 411
            + ++L R    +      P+ +A+ E+      Q   F++ ++    E+K ++  +   
Sbjct: 352 NKIKQLERILGKTFTKAEVPAGDAVIEK------QLMAFIEKVKATEVEEKQIEPFI--- 402

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGS--- 466
               IAA F  + R  L   ++   +      D +++  D       G  RD+ +G    
Sbjct: 403 --NNIAAEFEDLSREDLI--KKFVSLEFNKFLDYYKNSADLNQNAKAGRDRDSGRGERSD 458

Query: 467 --------SWFSLSVGSKQKAEA----RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                   +   L++G K    A     W+  +    +GI     G I VQ   TF+EV 
Sbjct: 459 RGRKGGDFTKLFLNIGEKDNLNAGTLLGWINGLQSVPNGI---EFGKIDVQRSFTFMEVE 515

Query: 515 A 515
           +
Sbjct: 516 S 516


>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
 gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
          Length = 457

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     ID +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIDQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G A V +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSACVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 190/347 (54%), Gaps = 7/347 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+  G  +   +QE  L   L  +D++  A+TG+GKT+ FGL     ++  +D 
Sbjct: 23  QDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTIQRVVGRDDE 82

Query: 69  ----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    AP AL + PTRELA+QVG +L          VA   GGV +  +   L+ G
Sbjct: 83  GWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIEPQAELLRRG 142

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + VGTPGR+ D  +   LN+  +K VVLDEADEMLDLGF+  +E IL   P+ R+ ++
Sbjct: 143 LEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSYLPEDRQSML 202

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS--DRDNAIVNILRY 241
           FSAT+   +  +A+ Y    +R++ A  E+   +    R V+      D+D  I  ILR 
Sbjct: 203 FSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKDEMIGRILRA 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+   +R  + L    F    L G+L+Q  R  AL+  R G+  + +AT
Sbjct: 263 TGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRTGKVDILVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V ++
Sbjct: 323 DVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLV 369


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 196/355 (55%), Gaps = 10/355 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   + Q   ++L+   +++ T +Q   +   L   D+L  AQTGSGKT AFG+ L
Sbjct: 1   MTTFEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+   ND+        +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  VDTV-RRNDQLQ------SLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  + + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K + KD   +   S+     DI   A +   +++   +V  
Sbjct: 174 RHQTLLFSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEYATIARENEKLETLVGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V      L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G+++ F+ P  M
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEM 348


>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
          Length = 457

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA  V  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADHVASELRPLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1]
 gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14]
 gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180]
 gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357]
          Length = 629

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 196/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I+  +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIKQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPASCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
 gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
          Length = 646

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 197/357 (55%), Gaps = 8/357 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 39  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 95

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 96  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 152

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 153 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 212

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  + +D   V + + +   S ID     ++   R  A+V +L +    + + FC T
Sbjct: 213 KQLSSKFMRDPQTVKVEALH-ADSQIDQIFYEISPEQRLEAVVKVLGHFRPASCVAFCFT 271

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 272 KQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 331

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           ++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 332 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 388


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 205/381 (53%), Gaps = 10/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F N  I + IG+AL   GY   T VQ  ++   L + D++V AQTGSGKT A+ + +
Sbjct: 1   MKSFRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPI 60

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              +   EN        P AL + PTRELAVQV  +   +     +  A   G  S   E
Sbjct: 61  CELIEWLEN-------KPQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSME 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + +L+   H+VVGTPGR+ DHI+   L ++ +  +V+DEAD MLD+GF   +E I+   P
Sbjct: 114 KAELKQKTHVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  ++FSAT+   +  ++ +Y +D + ++++  N   SDID+    V   D+   + +
Sbjct: 174 MERMTMLFSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLND 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++      + ++FCST+  V    + L    +    + G + Q +R ++++  + G  R 
Sbjct: 234 VMIVEKPDSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRY 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARGID+  + +VI+ ++  + EN +HR GRTGRAG+KG +V  +     R   
Sbjct: 294 LIATDLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLH 353

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            +      S+   P P+ E +
Sbjct: 354 DIQELIGFSIQELPKPAKEEV 374


>gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
 gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
          Length = 646

 Score =  216 bits (550), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|332307071|ref|YP_004434922.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174400|gb|AEE23654.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 446

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 211/356 (59%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +G+AL  +G+   T +Q   +   L  KD++ S++TGSGKT+AF L     
Sbjct: 3   FSDLPLDHRLGKALEIKGFTQATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62

Query: 62  LLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +L +     P S   P  L +APTRELA QV  +L+WL AK  +  A+ +GG + + + +
Sbjct: 63  VLTKQ----PLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPK 178
            L++    VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I   +  +
Sbjct: 119 ALRHYPQFVVGTAGRIADHLSGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHR 178

Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIV 236
           KR+ +MFSAT+ + A+  L ++  K   R++I   + +H DI  R  L   ++ ++  + 
Sbjct: 179 KRQSMMFSATLDNAALHHLTQSMLKAPQRISIGISSAEHKDIQQRFFLADNVTHKERMLA 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I+     +  IVF +TRA   R + +L E     +ALSG LSQ +R+N +     G+  
Sbjct: 239 HIINEKDHRQVIVFTATRADTERLSSLLKEQGLYSIALSGNLSQGQRNNIMSEFGRGQQH 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + + TD+A+RG+DL ++ LV++ +L    +  +HR GRTGRAG KG +V FV P++
Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKD 354


>gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112]
          Length = 626

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
 gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
          Length = 584

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56
           M +FE +   + I +A+S+ G+   + +Q+  + P L     D++  AQTG+GKT  FG 
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAI-PTLLANGADMVALAQTGTGKTATFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
            L   L+  + R +       L ++PTREL +Q+  EL   YAK  T V V    GG S+
Sbjct: 60  PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLTKVNVVAVYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL 
Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A
Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  +
Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++
Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKS 349


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 188/349 (53%), Gaps = 9/349 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P ++  AL   G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ +   ++  N 
Sbjct: 13  PDIVA-ALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMVQNVVGPNH 71

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D+     AP ALA+APTRELA+QV  +LE   A+ GV V    GG +   +   L+ 
Sbjct: 72  EGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYEPQIEALER 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D      L ++H + VVLDEADEMLDLGF  D+E +L  +P  R  +
Sbjct: 132 GVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAMTPAGRHTM 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +FSAT+  A+  +A+ Y      +    E          ID         D+   +  +L
Sbjct: 192 LFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAMDKVEMVARLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    IVF  T+ + ++  + L E  F   A+ G+L Q  R  AL+  R G+  V +
Sbjct: 252 QSEGRGLTIVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFRTGKVDVLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  V++ +   + +  LHR GRTGRAG+ G++V ++
Sbjct: 312 ATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLV 360


>gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
 gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
          Length = 650

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1]
 gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11]
 gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12
           substr. MG1655]
 gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           301]
 gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046]
 gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227]
 gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1]
 gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11]
 gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15]
 gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1]
 gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3]
 gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1]
 gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3]
 gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2]
 gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1]
 gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3]
          Length = 646

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
 gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
          Length = 646

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 200/372 (53%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPAGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LVI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/527 (29%), Positives = 258/527 (48%), Gaps = 40/527 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++++ G+   + +Q   +   ++  D++  AQTG+GKT AFG  +        +  S  
Sbjct: 17  KSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGII-------NHISKK 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   A+ +APTRELA+QV  EL+ L     + +    GG  +  + R L+   +IVVGTP
Sbjct: 70  SGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRALKRNVNIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI+   + +  +K +VLDEADEML++GF DD+E I+   P +R+ L+FSAT+   
Sbjct: 130 GRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQTLLFSATMPDQ 189

Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  LAK Y K DA  ++I   +   S I      V+   R  A+  +L +    +AI+FC
Sbjct: 190 IRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLDFDTPSSAIIFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + +    + V  + G++SQ  R   L+  ++G     +ATDVAARGID+ 
Sbjct: 250 RTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVATDVAARGIDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ +L  + E+ +HR GRTGRA R+G++  ++        +++       +  + 
Sbjct: 310 GITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIKSVTKSDISRKN 369

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDV---LLAKHDPEKIAAGFLRIHRAG 427
            P+V  I    ++ IL+D    ++I   D  K + V   L  K+D  +I A  +      
Sbjct: 370 IPTVNDIFNSKSKSILED--VTNTINDSDYSKFIPVATELTQKYDSVEIIAALI------ 421

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
                          +++F DD                     LS+G +     + L+  
Sbjct: 422 ---------------KNKFNDDLLETYTSDVLEAPKSEDIRLFLSIGRRDGINPKTLVNF 466

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
           +  ++ I   SIG I +  + +FV +S D  D +     LDK I +K
Sbjct: 467 IKDTARIRASSIGDIDILENFSFVNISPDVKDKV-----LDKCIGVK 508


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 224/410 (54%), Gaps = 27/410 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FEN+   + + +AL+  G+   T +Q++ +   L+ KDV+  A TG+GKT AFG+ +
Sbjct: 1   MSSFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +N   SP+    A+ I PTRELA+QV  EL  +    G+      GG     + 
Sbjct: 61  IE--ICDN---SPSIQ--AIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQM 113

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L+    I+V TPGRL DH+ + K +  + +K +VLDEADEMLD+GF DDI  +++  P
Sbjct: 114 KGLKEKPQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+SP I  +A    K    V   S+  +   I    V V  S +  A+  
Sbjct: 174 AERQTLLFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHESGKFEALCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       AIVF  T+  V    + L    +  V L G++ QQ R++ ++  ++G+ +V
Sbjct: 234 ILDTQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG+ G+S+  +         
Sbjct: 294 LVATDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFV--------- 344

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
             FRE  +  +      +E +  R  +R ++ P   ++I+  ++K++D L
Sbjct: 345 -TFREIKLLKL------IEQVSARRMER-MEVPTLEEAIEEQQRKVIDSL 386


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q+  +   L  KD+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  ETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  SGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI TL + + K    V   +       ID    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
 gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 199/349 (57%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I + L++ GY   T +Q   +       DVL  AQTG+GKT AF L L S +   
Sbjct: 14  NLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLLSNI--- 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
               +  + P  L +APTRELA+QV    +  Y++   G  V    GG S   + + L+ 
Sbjct: 71  ---DTALTKPQILVLAPTRELAIQVAEAFQT-YSRHMRGFHVLPIYGGQSYPIQLKALKR 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++VGTPGR+ DHI    L++S +KA+VLDEADEML +GF DD+E IL  +P +R+M 
Sbjct: 127 NPQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQMA 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242
           +FSAT+   I  + K +  +   V IA++     +I+ + +++  L  + + +  IL   
Sbjct: 187 LFSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLTRILETE 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+       + L    +   AL+G+L+Q  R   +  ++ G+  + IATD
Sbjct: 247 DYDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDIVIATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           VAARG+D+P ++LVI+ ++ ++ E+ +HR GRTGRAGRKG ++ F  P+
Sbjct: 307 VAARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPR 355


>gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 623

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 256/512 (50%), Gaps = 36/512 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           G+   + VQE  + P L EKD  ++  AQTG+GKT AFG  L   + A            
Sbjct: 2   GFTEPSEVQEKAI-PILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDA------GYKKTQ 54

Query: 77  ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            L ++PTREL +Q+  EL+  Y+K   G+      GG S+  + + ++ GA I+V TPGR
Sbjct: 55  GLILSPTRELCLQITNELQN-YSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGR 113

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D IR   ++IS ++  VLDEADEML++GF DDI  IL  SP+ +   +FSAT+   + 
Sbjct: 114 MQDMIRRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVA 173

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +AK++  + V + + S+N+   ++ +   LV   DR  A+  +   +    +++FC T+
Sbjct: 174 RIAKDFMNNPVEITVGSKNKGTENVSHEYYLVGGRDRYKALKRLCDANPEIFSVIFCRTK 233

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  + L +  +   A+ G+LSQ +R   ++  R  + ++ +ATDVAARGID+ D+ 
Sbjct: 234 RDTQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDIT 293

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VIH  L   PE   HRSGRTGRAG+ G S+ +  ++  R+ + + +    +   +  P 
Sbjct: 294 HVIHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQRNFERKDVP- 352

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
                  D + I Q  LF  + Q  + + ++  + K+ P+            G    EE+
Sbjct: 353 -------DGEEICQVQLFHLASQIKDTE-INHAIDKYVPQ-------LEEELGDYTKEEL 397

Query: 435 T----PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS---WFSLSVGSKQKAEARWLMPM 487
                 V      + +  DS + +V   +RD  +G S    + ++VG K   +   L   
Sbjct: 398 IKKFFSVEFTRFHNYYSKDSIS-QVSADNRDYSEGDSDSVRYFINVGGKDGFDWMSLKDF 456

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           L     ++R  +  + V+   +F    AD +D
Sbjct: 457 LKEQLDLDRDGVYKVDVKNTFSFFNTDADKLD 488


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 199/344 (57%), Gaps = 2/344 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF + +   L+   N   SP
Sbjct: 30  QSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILHRLMPLANASASP 89

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++  L+ G  I+V 
Sbjct: 90  ARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEILVA 149

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++Y    V + +A+ N   + I   A  ++   +  A+V++++  G K  IVF
Sbjct: 210 NEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHLVKSRGLKQVIVF 269

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVAARG+D+
Sbjct: 270 SNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVLVATDVAARGLDV 329

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R
Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEER 373


>gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82]
          Length = 645

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 33  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 87

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 88  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 266

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 267 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 326

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 327 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 386

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 387 VELPNAELLGKR 398


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 192/339 (56%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L+ +GY   + +Q A     +  +D++  AQTG+GKT AF L L   L  E        
Sbjct: 57  TLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQPE------GP 110

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P  L +APTRELA+QV    + +      + V    GG     +   L+ G  +VVGTP
Sbjct: 111 GPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKRGVDVVVGTP 170

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   LN SHL+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+   
Sbjct: 171 GRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPAE 230

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K Y ++   + I ++ ++   I  R + +  S +  A+  +L     +  I+F  
Sbjct: 231 IRRLSKRYLREPAEITIKTQEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFAR 290

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A     ++ L      V  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+  
Sbjct: 291 TKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVER 350

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 351 IGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPR 389


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 198/347 (57%), Gaps = 8/347 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               LA+ D     + P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CE--LADWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAI 341


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 199/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y    + + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/510 (30%), Positives = 249/510 (48%), Gaps = 34/510 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +QE  +   L   D++  AQTG+GKT A+G  + S       R +  
Sbjct: 17  KAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILS-------RLNDT 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
           +   AL +APTRELAVQV  EL+ L       V    GG S+ R+ R L+ +   IVVGT
Sbjct: 70  NGIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRDNIDIVVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  K L ++ +  +VLDEADEML++GF +DIE I+ ++P +R+ L+FSAT+  
Sbjct: 130 PGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTLLFSATMPA 189

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I  LAKNY K DA  V I   +   S I+    ++    R  A+  +L      +AI+F
Sbjct: 190 PIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNPSSAIIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V    + L    + V  + G++SQ  R   L+  ++G   + IATDVAARGID+
Sbjct: 250 CRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVAARGIDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ +L  + E+ +HR GRTGRA R G +  ++        +++ R    ++  +
Sbjct: 310 DGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTKSTITEK 369

Query: 371 PAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLRIHRA 426
             P+   I  R    I+ +    +DS  GD    V     L   +DP  I A  ++I   
Sbjct: 370 SVPTANEIHSRKFTNIMNEIKETIDS--GDFSTFVPSAIELNEAYDPISIIASLMKIK-- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                              F  ++        S+++ +       SVG K     + L+ 
Sbjct: 426 -------------FENESSFEYNTDTLDAPSASKNDVR----LFFSVGKKDGLTPKILIN 468

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            +   + +   +IG I +  + +FV +  D
Sbjct: 469 YIKDQTRVRASAIGKIDLMDNFSFVTIDED 498


>gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
 gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/377 (36%), Positives = 203/377 (53%), Gaps = 20/377 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----TLLAENDRFS 70
           L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL L      TL        
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHVDVTLFQTQ---- 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+
Sbjct: 74  ------ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++   + +  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT
Sbjct: 127 VATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              AI  ++   Q++ + + I +       I+ +    +   +   +  +L  H   + +
Sbjct: 187 WPEAIAAISGRVQRNPLAIEIDT-TEALPPIEQQFYETSAQGKIPLLKRLLSLHQPSSCV 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+         L E     +AL G+L Q+ER   L    +G ARV +ATDVAARG+
Sbjct: 246 VFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSARVLVATDVAARGL 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + +
Sbjct: 306 DIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSDMLQIKL 364

Query: 368 VWEPAPSVEAIRERDAQ 384
            W+  P+  A+   +A+
Sbjct: 365 NWQTPPASSAVVPLEAE 381


>gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 204/355 (57%), Gaps = 12/355 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  +L +  +   T +Q   +   L +KD+L SAQTG+GKT AF + +   +  +
Sbjct: 8   NLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPMIEMIATK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG 124
                      A+ + PTRELA QV   +E L  +  V+ +VC +GG  ++++ R L+  
Sbjct: 68  K-------INRAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQLRRLKTK 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DH++ K L ++ +  ++LDE D MLD+GF   I+ I+   PK+++ LM
Sbjct: 121 PQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLPKQKQTLM 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HG 243
           FSATI+P+I  L+K Y  +A RV++A+ N     I    + +   D+ N +V  ++  HG
Sbjct: 181 FSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQEVINLRQEDKYNTLVEQVKTKHG 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   +VF  T+ +  +  K L +  F+  +L G L Q +R+  +   R  +  V +ATD+
Sbjct: 241 S--TLVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHVLVATDI 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           AARG+D+P +E V++ +L    E+ +HR GRTGRAG  G +  FV P + ++  E
Sbjct: 299 AARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWHE 353


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 214/376 (56%), Gaps = 20/376 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           GY   + +QE  +   L+ + +L  AQTG+GKT AF L L        +R  P   +P  
Sbjct: 31  GYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLL-------ERLDPKIQSPQI 83

Query: 78  LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           + +APTRELA+QV    +    Y     V+ +  GG  +  + R L+ G  ++VGTPGR+
Sbjct: 84  IVLAPTRELAIQVAEAFKSYSRYLPDFTVLPIY-GGQDMRGQLRSLKRGVQVIVGTPGRV 142

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH++ K L++S ++AVVLDEADEML +GF DD+E IL ++P + +  +FSAT+ PAI  
Sbjct: 143 LDHLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIKR 202

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +A+ Y K A  V IA++      I    ++V  S + +A+  +L     +  I+F  T++
Sbjct: 203 VAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVENFEGMIIFVRTKS 262

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           + +   + L    +   AL+G+ +Q+ R   +  ++ GR  + +ATDVAARG+D+  + L
Sbjct: 263 ATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIGL 322

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV--WEPA 372
           V++ ++  + E  +HR GRTGRAGR+G ++ F  P+  +RR  R    A    +  +E A
Sbjct: 323 VLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPK--ERRLLRAIESATKQPLTPYE-A 379

Query: 373 PSVEAIRERDAQRILQ 388
           PS E I E   QRI Q
Sbjct: 380 PSAEKISE---QRIQQ 392


>gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
 gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
          Length = 651

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 39  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 202/355 (56%), Gaps = 12/355 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L LA+       
Sbjct: 20  ALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQR------ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGAHIVVGT
Sbjct: 74  -KPQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGAHIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P   + ++FSAT+ P
Sbjct: 133 PGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L       +IVF 
Sbjct: 193 MLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 253 RTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 313 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367


>gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197]
 gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
 gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019]
 gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
 gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
          Length = 646

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL +   L  +  +    
Sbjct: 14  KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ + L Q+  HI+VGT
Sbjct: 72  ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+  
Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      +D   V     ++ + +  ++     +  IVF 
Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362
            +  V + ++  +PE+ +HR GRTGRAG  G SV FV P  M   R  E+L ++      
Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               + + + + + +++ I++          L  D+     +     LL ++D  ++ A 
Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417

Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           FL     +     P +ITP   +  R + R +   ++ G    DNFK S  F+
Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466


>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
          Length = 528

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 202/374 (54%), Gaps = 8/374 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EA+S  GY   + +Q   +   L    +L  AQTG+GKT AF L L S + A   
Sbjct: 33  PAVL-EAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDAN-- 89

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
                + P  L +APTRELA+QV        +K     V    GG     + R L+ GA 
Sbjct: 90  ----VAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGAQ 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P   +  +FS
Sbjct: 146 VIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +A+ Y K+A  V I SE R    I    + V    + +A+  IL       
Sbjct: 206 ATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEVEPFDA 265

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F  T+A  +   + L+     V  LSG+L+Q++R   ++ ++ G+  + IATDVAAR
Sbjct: 266 SIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAAR 325

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P +  VI+ ++  + E  +HR GRTGRAGR G ++ ++    +     L R  N  
Sbjct: 326 GLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRTLERATNSP 385

Query: 367 VVWEPAPSVEAIRE 380
           +     PS  A+++
Sbjct: 386 MEPYQLPSPAALQK 399


>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
           laidlawii PG-8A]
 gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
           PG-8A]
          Length = 448

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 224/404 (55%), Gaps = 7/404 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI + I +AL+  GY   T++QE  +   L  +D+L SAQTG+GKT AF + + 
Sbjct: 1   MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
             +    +  +P     AL + PTRELA+Q+   ++ +YAK   +++  I GGVS  R+ 
Sbjct: 61  QKIYETKEHKAPRKVQ-ALILTPTRELALQIHENVK-IYAKYLNIISTTIYGGVSQKRQE 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +V+ TPGRL D +  K +++  ++ +VLDEAD+MLD+GF  D+  I+D +PK
Sbjct: 119 EALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+   I  L+K    +  R+ +    +    I     +V  +++   ++++
Sbjct: 179 KRQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K+ +VF  T+   ++  K L     +   + G  SQ  R  AL   + G+ ++ 
Sbjct: 239 IYTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L+ VI+ EL   PE  +HR GRTGRAG  GM++ ++  + Q+   +
Sbjct: 299 VATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQ 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR-ILQDPLFLDSIQGDEK 401
           + +  N  +  E       I+ +  QR ++ D L  D+ +  EK
Sbjct: 359 VEKHINSKI--EAVGHKYQIQSQPKQREVITDKLKTDTSKKQEK 400


>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 651

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +   +   + R  P+ 
Sbjct: 34  AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILERI--PDGRRKPS- 90

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+QV  E+  L     + V    GG S+  +   L+ GA IVVGTPG
Sbjct: 91  ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   + L+FSAT+   I
Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250
             +  +Y  D   + ++ +  +  +I+   V+    D      N+L   G +    AI+F
Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +ATD+AARGID+
Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  VI+  L  +P   LHR GRTGR G+KG S+ ++
Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/534 (30%), Positives = 266/534 (49%), Gaps = 40/534 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + + +S++GY + T +Q+A +   L  +D++  AQTG+GKT AF L +   L   
Sbjct: 42  NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                    P  L +APTRELA+QV        A      V    GG     +   L+ G
Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH+R K LN SHL  +VLDEADEML +GF DD+E+IL+  P++R++++
Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y      + I +   +   I  R + V    + NA+  +L     
Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+A      + L  + + V  L+G++ Q +R   ++ +R G   + +ATDVA
Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+      ER F   
Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPR------ERSFLSN 389

Query: 364 NVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH----- 411
               V +P      P  + I     +++    +   S + D  +  ++L  L K+     
Sbjct: 390 LERAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKEL 449

Query: 412 --DPE-------KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             DP+        +A GF  +   G    + I   +  + R+  RD+++  +   G  DN
Sbjct: 450 DIDPKDLTLAALNLAVGFNALLEKG--NEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDN 507

Query: 463 FKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +       F + VG + + +   L+  +   +G+  +SIG IR+  + + V++
Sbjct: 508 NRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDL 561


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/381 (35%), Positives = 216/381 (56%), Gaps = 22/381 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+  +G+   T +Q  ++   LR + D++  +QTG+GKT +F L L   ++ E +R    
Sbjct: 22  AVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPLVD-VINEYER---- 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ + PTRELA+QV  E++ L  K  + V    GG  +  + R L+ GAHIVVGTP
Sbjct: 77  -EVQAIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIRALRKGAHIVVGTP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR   L +  ++  +LDEAD MLD+GF DDI  I   +P+ +R+LMFSAT+   
Sbjct: 136 GRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRDKRVLMFSATMPRE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVF 250
           +  LAK Y K+   +  +S+    + ++   + V  + + + +  IL   ++G    IVF
Sbjct: 196 VLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKISVLERILNSEFYG----IVF 251

Query: 251 CSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           C T+    R T++LAE L    +   AL+G++SQ+ R  AL   +  +  + +ATDVAAR
Sbjct: 252 CQTK----RETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINILVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  +++  L  N E  +HR GRTGRAG+KG ++  I     RR   +   A VS
Sbjct: 308 GIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRYIENIAKVS 367

Query: 367 VVWEP-APSVEAIRERDAQRI 386
           +       S++  + RD+++I
Sbjct: 368 IKKSKLQESIDREKRRDSRKI 388


>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 501

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 196/346 (56%), Gaps = 16/346 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RF 69
           AL   G  +   +QE  +   L   D++  A+TG+GKT+AFG+ +   ++ + D    + 
Sbjct: 30  ALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPILQKVVLKTDEGFDQL 89

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P   P AL ++PTRELA QVG +L          V    GGV    +   L+ G  +VV
Sbjct: 90  DPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYDDQLDALKKGVDVVV 149

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D +    L++SH++  VLDEADEMLDLGF  D++ +LD +P  R+ +MFSAT+
Sbjct: 150 GTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDRTPASRQTMMFSATM 209

Query: 190 SPAITTLAKNYQKDAVRVNIASENR-------QHSDIDYRAVLVALSDRDNAIVNILRYH 242
              I +LA++     V  NI +E R       Q +   Y+A  +   D+   I  +L+  
Sbjct: 210 PAVIMSLARSRLNQPV--NIRAEGRDAQATVPQTTQFIYQAHEL---DKPEMIGKMLQSE 264

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  +VF  T+ +  R    L +  F+  +L G+L+Q +R   ++  R+ + +V +ATD
Sbjct: 265 GMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRNDKIQVLVATD 324

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  V++ E+  +PE  +HR GRTGRAG +G++V ++
Sbjct: 325 VAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLV 370


>gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
 gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
          Length = 642

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/420 (33%), Positives = 219/420 (52%), Gaps = 15/420 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAGFLRI 423
              P+ + + +R  ++          ++  +      LLAK  PE+      +AA  L++
Sbjct: 371 VELPNADLLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKMQPEEELDIETLAAALLKM 428


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 238/440 (54%), Gaps = 30/440 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +     
Sbjct: 15  QSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTP
Sbjct: 73  ----GIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   
Sbjct: 129 GRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A+ +  +   + + ++     +I    + V    + + +  +L     + AIVF  
Sbjct: 189 IRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  
Sbjct: 249 TKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANV 365
           +  V + ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     + 
Sbjct: 309 VTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
                 AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L
Sbjct: 368 ------APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAAL 419

Query: 422 RIHRAGLCAPEEITPVSLVS 441
           ++    +    + TP++L S
Sbjct: 420 KM----MTKEPDTTPIALTS 435


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 155/497 (31%), Positives = 254/497 (51%), Gaps = 34/497 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+++   Q + +A+S+ G+   T +Q   +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    D      A   L IAPTRELAVQV  EL  +     V V    GG  + R+ 
Sbjct: 61  IEKVDVNVD------AIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  + L +  +  V+LDEADEML++GF +DIE IL + P+
Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEVQEKRKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QN 351
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++ FV P       N
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLL 408
           ++R  +R              P+++   E   QRI  D L     QG+    K++ + LL
Sbjct: 355 IERTTKRKMERLT-------PPTLDEAME-GQQRIAADKLTESVTQGNLSYYKQLAEELL 406

Query: 409 AKHDPEKIAAGFLRIH-RAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +HD   + A  +++  +    +P ++T  P  +  G     D ++    GG SR N K 
Sbjct: 407 EEHDSVSLVAAAIKLFTKEPNESPIQLTAEPPVIAKG-----DKNKRGNGGGRSRSNSKN 461

Query: 466 SSWFSLSVGSKQKAEAR 482
            S  +    SK+  + R
Sbjct: 462 YSQQNRRGNSKRFGDKR 478


>gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89]
          Length = 651

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 39  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 235/434 (54%), Gaps = 30/434 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +          +
Sbjct: 2   GFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQ------GI 55

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ DH
Sbjct: 56  VIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDH 115

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A+
Sbjct: 116 INRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAE 175

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  +   + + ++     +I    + V    + + +  +L     + AIVF  T+  V 
Sbjct: 176 RFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVD 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V +
Sbjct: 236 ELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIP------QNMQRRAERLFREANVSVVWEP 371
            ++  +PE+ +HR GRTGRAG+KG++ +FV P      +N++R  +R     +       
Sbjct: 296 FDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMD------- 348

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           AP+++   E   QR++ + L   +I+ +     K++ + +L ++D   + A  L++    
Sbjct: 349 APTLDEALE-GQQRLIAEKL-QSTIENENLAYYKRIAEEMLEENDSVTVVAAALKM---- 402

Query: 428 LCAPEEITPVSLVS 441
           +    + TP++L S
Sbjct: 403 MTKEPDTTPIALTS 416


>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 644

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 267/553 (48%), Gaps = 32/553 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE     
Sbjct: 23  ILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE----- 77

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     ++      V V    GG     + R L+ G  IVV
Sbjct: 78  -LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVV 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 137 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I +      DI      V    ++ A+V  L       AI+
Sbjct: 197 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 257 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 317 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 376

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423
              P+ E + +R  +R   +      ++  +      LL+K  P      E +AA  L++
Sbjct: 377 VELPNAELLSQRRLERFAAN--VQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALLKM 434

Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLS 472
            +     P  + P  +   R  F  RDD R   F   G   D  +           + + 
Sbjct: 435 AQGE--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 492

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLD 528
           VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  L+
Sbjct: 493 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 552

Query: 529 KGIQLKYLGGEKP 541
           K + ++ +G  +P
Sbjct: 553 KPMNMQLMGDAQP 565


>gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431]
          Length = 632

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197]
          Length = 646

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301]
 gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073]
 gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T]
 gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227]
 gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046]
 gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739]
 gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5]
 gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469]
 gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88]
 gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a]
 gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989]
 gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606]
 gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9]
 gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B]
 gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736]
 gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD; AltName:
           Full=Translation factor W2
 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5]
 gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli
           ABU 83972]
 gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146]
 gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           ETEC H10407]
 gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T]
 gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1]
 gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905]
 gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327]
 gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010]
 gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G]
 gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68]
 gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1]
 gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227]
 gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v]
 gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86]
 gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82]
 gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74]
 gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70]
 gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671]
 gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71]
 gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272]
 gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218]
 gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304]
 gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
 gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
          Length = 646

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
 gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
          Length = 469

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 194/338 (57%), Gaps = 8/338 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E L   GY ++T++Q   L   L  +DV+   +TGSGKT AFGL L   L  +  
Sbjct: 21  PELI-ENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKRF 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GAH
Sbjct: 80  RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    LN+ ++  +VLDEAD ML++GF  D+++I+   P++R+ L+FS
Sbjct: 134 IIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+      V V +AS +  ++   +   + +  DR  A+  +L  H   +
Sbjct: 194 ATFPKQIQKVAEQIMFKPVMVKVASTHDSNTIDQHFYQIDSNKDRQKALRLLLLQHRPDS 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAAR
Sbjct: 254 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           G+D+  L++VI+ E + + E  +HR GRTGRAG KG +
Sbjct: 314 GLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTA 351


>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 634

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 171/561 (30%), Positives = 273/561 (48%), Gaps = 40/561 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 33  ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 88  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++
Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTI 384

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---------EKIAA 418
                P+ E + +R  ++          ++  +      LLAK  P         E +AA
Sbjct: 385 PEVELPNAELLSKRRLEKFAAK--VQQQLESSDLDQYRALLAKIQPTAEGEELDVETLAA 442

Query: 419 GFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--------- 466
             L++    R+ +  P+              R D R  +   G R + +           
Sbjct: 443 ALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPKRERRDVG 502

Query: 467 --SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDL 520
               + + VG     E R ++  +     I+ + IG I++    + +E    +  + +  
Sbjct: 503 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGIPGEVLQH 562

Query: 521 LRRTVKLDKGIQLKYLGGEKP 541
             RT  L+K + ++ LG  +P
Sbjct: 563 FTRTRILNKPMNMQLLGDAQP 583


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 200/359 (55%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GYV +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A+  + V    GGVS+  +   L++GAH++VGTPG
Sbjct: 78  ---LVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D IE I+  +P +R+ L+FSAT   +I
Sbjct: 135 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRRQTLLFSATYPVSI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA  + +   +V   +    HSD  I+ R   ++  +R  A+  +L +    + + FC
Sbjct: 195 KQLASKFMRAPQQVKAEAF---HSDDQIEQRFYEISPEERMEAVTKVLAHFRPASCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 252 FTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG  G+++ ++  +   RA+ + +     + W+
Sbjct: 312 SLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWD 370


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 197/340 (57%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++++ GY   T +Q   +   L  +D++  AQTG+GKT AFGL +   L+ + DR  PA+
Sbjct: 24  SVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADR--PAN 81

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTREL  Q+G  L     KT + +   +GG S+++++  L+ G  ++V TP
Sbjct: 82  RTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQLQLEKGTDVLVATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    +++S +  +VLDEAD+MLDLGF  D+  I    P KR+ L+FSAT+  A
Sbjct: 142 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTLLFSATMPKA 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I+ LA N+  D ++V +    +    ++ Y   +   +D+ + +   L  +    +IVF 
Sbjct: 202 ISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFL 261

Query: 252 STRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            T+    +  K L EH+ F+V ++ G  SQ +R  AL+  +DG  +V +ATDVAARGID+
Sbjct: 262 RTKHGAEKLYKHL-EHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           P +  V + +L   P+  +HR GRT RAGR G+++ F  P
Sbjct: 321 PAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAP 360


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 48  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 104

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 105 ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 161

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 162 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGI 221

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 222 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 278

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 279 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 338

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 339 ALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 397


>gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 629

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL +   L  +  +    
Sbjct: 14  KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ + L Q+  HI+VGT
Sbjct: 72  ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+  
Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      +D   V     ++ + +  ++     +  IVF 
Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362
            +  V + ++  +PE+ +HR GRTGRAG  G SV FV P  M   R  E+L ++      
Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               + + + + + +++ I++          L  D+     +     LL ++D  ++ A 
Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417

Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           FL     +     P +ITP   +  R + R +   ++ G    DNFK S  F+
Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466


>gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
 gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
          Length = 651

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 39  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
 gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
          Length = 526

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 211/379 (55%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQDTF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   DR    + P  L I+PTRELA QV ++ + ++    GV VA  +GG+   ++ + L
Sbjct: 72  VPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I D +  +++
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAISDLALNRKQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +P I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLN 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 EEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +    +  + RA  
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYRERGKIRALE 370

Query: 359 LFREANVSVV----WEPAP 373
            + EA +SV      EP+P
Sbjct: 371 DYLEARLSVSEIEGLEPSP 389


>gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026]
 gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           042]
          Length = 655

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 39  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401]
 gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A]
 gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS]
 gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94]
 gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9]
 gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073]
 gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str.
           8401]
 gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS]
 gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A]
 gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94]
 gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017]
 gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034]
 gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9]
          Length = 651

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 39  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 207/391 (52%), Gaps = 35/391 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--PL 76
           G+   T +Q+  +   +  KD+L S++TGSGKT+AF L     L+    R  P S   P 
Sbjct: 20  GFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAMQRLI----RSKPLSKRDPR 75

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L +APTRELA QV  +L  + A T     + +GG   +++ + L    H VV TPGRL 
Sbjct: 76  VLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKALARDPHFVVATPGRLA 135

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATIS-PAIT 194
           DH+    L +  L+ ++LDEAD MLDLGF D ++ I  ++  +KR+ LMFSAT+   A+ 
Sbjct: 136 DHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKRQTLMFSATLDHAAVN 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCST 253
                   +  R+ I SE   HSDI +R +    L  ++  +  +L     K  I+F +T
Sbjct: 196 QFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFSDHLDHKEAQLKALLEKQDFKQLILFTAT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R   +L+E  +  +ALSGEL+Q  RS  +Q    G+A++ I TDVA+RG+D+P +
Sbjct: 256 RGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAKILITTDVASRGLDIPQV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPA 372
             V++ +L  +PE  +HR GRTGRAG KG +  ++ P++                 W   
Sbjct: 316 SHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKD-----------------WPSF 358

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
             +EA         LQ PL  ++I+G E K 
Sbjct: 359 KKLEA--------FLQQPLAFEAIEGLEAKF 381


>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
 gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +        +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETFSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
 gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
          Length = 638

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 201/351 (57%), Gaps = 10/351 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+++ G+   + VQE  +   L E KD++  AQTG+GKT AFG  +   +  +      +
Sbjct: 16  AITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFPMLQKIDID------S 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                L ++PTREL +Q+  EL+    Y K G+ V    GG S+  + R ++ GA I+V 
Sbjct: 70  RTTQGLILSPTRELCLQITNELKQYGKYCK-GLNVTAIYGGASITDQARSVKRGAQIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  K ++IS ++  VLDEADEML++GF +DI  IL  +P  +   +FSAT+ 
Sbjct: 129 TPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHTPDDKSTWLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             ++T+AK +  D   + + + N   +++ +   LV   DR  A+  +   +    +++F
Sbjct: 189 KEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNARDRYQALKRLSDANPDIFSVIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ +ATDVAARGID+
Sbjct: 249 CRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQMLVATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ + + R
Sbjct: 309 DDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKIKSIER 359


>gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74]
          Length = 603

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 189/332 (56%), Gaps = 2/332 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY   + +Q+  +   L  KD+L +AQTG+GKT  F L L   LL  + R + +
Sbjct: 14  QAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLHRLL--DGRPAAS 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA QV   ++       +  AV  GGV ++ + + L++G  +++ TP
Sbjct: 72  NCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMKALRSGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSAT S  
Sbjct: 132 GRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTKRQTLLFSATFSSE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           ITTLA+    +  +V+ A  N     +    V +  S +  A++++++ +G K  +VF  
Sbjct: 192 ITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISLIKQNGWKQVLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    L+       A+ G  SQ  R+ AL   + G   V +ATD+AARGID+ +
Sbjct: 252 TKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLVATDIAARGIDINE 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           L +VI+ +L + P + +HR GRTGRAG  G +
Sbjct: 312 LPIVINIDLPNTPADYVHRIGRTGRAGASGQA 343


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLRFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAVISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL +   L  +  +    
Sbjct: 21  KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ + L Q+  HI+VGT
Sbjct: 79  ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+  
Sbjct: 135 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      +D   V     ++ + +  ++     +  IVF 
Sbjct: 195 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + +ATDVAARG+D+ 
Sbjct: 255 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362
            +  V + ++  +PE+ +HR GRTGRAG  G SV FV P  M   R  E+L ++      
Sbjct: 315 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 374

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               + + + + + +++ I++          L  D+     +     LL ++D  ++ A 
Sbjct: 375 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 424

Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           FL     +     P +ITP   +  R + R +   ++ G    DNFK S  F+
Sbjct: 425 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 473


>gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 644

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 10/351 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDV-LVS-AQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+ + G+ N T VQE  + P L EKD+ LV+ AQTG+GKT AFG  +   + A N     
Sbjct: 16  AIIDLGFENPTEVQEKAI-PMLLEKDIDLVALAQTGTGKTAAFGFPVIQKIDANNRNTQ- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                AL ++PTREL +Q+  EL+ +   + G+ V    GG S+  + RD++ GA I+V 
Sbjct: 74  -----ALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQARDIKRGAQIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  + ++IS +   +LDEADEML++GF +DI  IL ++P ++   +FSAT+ 
Sbjct: 129 TPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTTPDEKNTWLFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  + K +  D + + + ++N   + + +   LV   DR  A+  +   +    ++VF
Sbjct: 189 AEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNARDRYEALKRLADANPDIFSVVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+       + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGID+
Sbjct: 249 CRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQMLVATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            ++  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+   + R
Sbjct: 309 DNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKISSIER 359


>gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39]
 gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
          Length = 629

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 629

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 197/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V ++ +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVIGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++V++ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 211/401 (52%), Gaps = 37/401 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 73  IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 132

Query: 68  -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
                        R  PA A P  L + PTRELA+QV       GR L        +V A
Sbjct: 133 PRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 186

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 187 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 246

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R    
Sbjct: 247 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 306

Query: 227 -ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             +S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+ 
Sbjct: 307 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNR 366

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 367 TLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 426

Query: 346 FVIPQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380
            ++        RR ER   R  N +VV   EP  S +  RE
Sbjct: 427 NLVNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRRE 467


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/534 (30%), Positives = 266/534 (49%), Gaps = 40/534 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + + +S++GY + T +Q+A +   L  +D++  AQTG+GKT AF L +   L   
Sbjct: 42  NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                    P  L +APTRELA+QV        A      V    GG     +   L+ G
Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH+R K LN SHL  +VLDEADEML +GF DD+E+IL+  P++R++++
Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y      + I +   +   I  R + V    + NA+  +L     
Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+A      + L  + + V  L+G++ Q +R   ++ +R G   + +ATDVA
Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+      ER F   
Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPR------ERSFLSN 389

Query: 364 NVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKH----- 411
               V +P      P  + I     +++    +   S + D  +  ++L  L K+     
Sbjct: 390 LERAVGQPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKEL 449

Query: 412 --DPE-------KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             DP+        +A GF  +   G    + I   +  + R+  RD+++  +   G  DN
Sbjct: 450 DIDPKDLTLAALNLAVGFNALLENG--NEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDN 507

Query: 463 FKGSSW---FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +       F + VG + + +   L+  +   +G+  +SIG IR+  + + V++
Sbjct: 508 NRLEDEMDRFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDL 561


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 222/412 (53%), Gaps = 17/412 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L  +DV+  +QTG+GKT A+ L     +  E            L
Sbjct: 22  GFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLEKIDLEQKTVQ------GL 75

Query: 79  AIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELAVQV + L E+   +   V+ VC GG S+ R+ R LQ G HIVVGTPGR+ D
Sbjct: 76  ILTPTRELAVQVTQSLKEFAVDRRLWVLTVC-GGQSMERQIRSLQKGVHIVVGTPGRVID 134

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +    L+   L+  VLDEADEML +GF DD++ IL  SPK R+ + FSAT+ PAI  L 
Sbjct: 135 LLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVCFSATMPPAIRDLV 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +N+  D + + I         I     ++     +  A++ IL     ++AI+F  T+ +
Sbjct: 195 ENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMANPESAIIFVRTKRT 254

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
            S  T  L E         G+L+Q +R   ++  +DG+ ++ +ATD+AARG+D+ +L  V
Sbjct: 255 ASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATDIAARGLDVENLSHV 314

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +L  N E+ +HR GRTGRAG+ G ++ ++  + +R   ++ R    S+     PS  
Sbjct: 315 INFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVKQSLKVSTIPSRT 374

Query: 377 AIRERDAQRILQ-DPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAGFLRI 423
            +   +AQR+ + +    +++ G+       +V  L  ++DP+ IAA  L++
Sbjct: 375 EV---EAQRVTRLETQVREALAGERMASFLPIVKRLGDEYDPQAIAAAVLQM 423


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGLQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 561

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 194/353 (54%), Gaps = 13/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q I ++LS+ G  +   +Q   L   L   D++  A+TG+GKT+ FG+     ++  
Sbjct: 43  NVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +   +   L
Sbjct: 103 DDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYEPQVEAL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  +VVGTPGRL D  R K L++ +++ VVLDEADEMLDLGF  D+E I+  +P  R+
Sbjct: 163 KNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAGTPAVRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235
            L+FSAT+   +  +A+ Y      +  A  +      R    + YRA  +   D+   +
Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKTEVV 279

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+ + 
Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +
Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFV 392


>gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 628

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 189/338 (55%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +   +   + R  P+ 
Sbjct: 34  AVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILERI--PDGRRKPS- 90

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+QV  E+  L     + V    GG S+  +   L+ GA IVVGTPG
Sbjct: 91  ---ALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDKLKAGAEIVVGTPG 147

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   + L+FSAT+   I
Sbjct: 148 RIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADVQQLLFSATVPADI 207

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVF 250
             +  +Y  D   + ++ +  +  +I+   V+    D      N+L   G +    AI+F
Sbjct: 208 EQIIHDYLTDPETILLSGDEYKVENIN--NVMYPTVDAYPKPRNLLYMIGMEEPEAAIIF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +ATD+AARGID+
Sbjct: 266 CNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAARGIDI 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  VI+  L  +P   LHR GRTGR G+KG S+ ++
Sbjct: 326 SDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLV 363


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 243/473 (51%), Gaps = 35/473 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL +   L  +  +    
Sbjct: 14  KAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ + L Q+  HI+VGT
Sbjct: 72  ----AVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTPHILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+FSAT+  
Sbjct: 128 PGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      +D   V     ++ + +  ++     +  IVF 
Sbjct: 188 EILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE------ 362
            +  V + ++  +PE+ +HR GRTGRAG  G SV FV P  M   R  E+L ++      
Sbjct: 308 GVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKKRMDPLK 367

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               + + + + + +++ I++          L  D+     +     LL ++D  ++ A 
Sbjct: 368 PPTQDEAFIGQVSSALDDIKD----------LIADTDTERYEAQAQALLEQYDAVEVVAA 417

Query: 420 FLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           FL     +     P +ITP   +  R + R +   ++ G    DNFK S  F+
Sbjct: 418 FLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGN-YRRGN---DNFKRSKRFN 466


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 211/401 (52%), Gaps = 37/401 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 73  IVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQR 132

Query: 68  -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
                        R  PA A P  L + PTRELA+QV       GR L        +V A
Sbjct: 133 PRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 186

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 187 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 246

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R    
Sbjct: 247 DDIEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFT 306

Query: 227 -ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             +S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+ 
Sbjct: 307 DDMSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNR 366

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 367 TLTALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 426

Query: 346 FVIPQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380
            ++        RR ER   R  N +VV   EP  S +  RE
Sbjct: 427 NLVNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRRE 467


>gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
 gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
          Length = 605

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 194/339 (57%), Gaps = 6/339 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L E GY+  T VQE + +  +   D+ V +QTG+GKT A+ + L   +LA+
Sbjct: 18  NLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLMQRMLAQ 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + +  P AL + PTRELAVQV  E   L   TG+  A   GGV   ++   L+NG 
Sbjct: 78  G---TESRRP-ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALKNGV 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GTPGR+ D  + K + + H+  +V+DEAD M D+GF  D+  +L   S  ++R+ +
Sbjct: 134 DLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEERQTM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  +  LA  Y  DA  + I ++N    +I+ +   VA   + + ++ ILR   
Sbjct: 194 LFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAADQKMSLLLGILRNEK 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+T+ +     K L  + +    L G+L Q +R + +   + G+    +ATDV
Sbjct: 254 PENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTCLVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARGID+ DL +VI+ +L +  EN +HR GRT RAG+ G
Sbjct: 314 AARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTG 352


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 186/340 (54%), Gaps = 16/340 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T VQE  +   +   D+LVS+ TGSGKT AF L     L+    R +P S
Sbjct: 15  AVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSLHRLVGR--RPAPNS 72

Query: 74  APLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P  L + PTRELA QV       GR L WL        A  +GG     + + L     
Sbjct: 73  GPRVLVLTPTRELAQQVEEAVKTYGRALRWLN------TACLVGGAPFFAQVKQLSRPVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DH+  + L +S ++ +VLDEAD MLD+GF +DIE I+ + P  R+ L+FS
Sbjct: 127 VVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT+   +  LA    ++  R+ IAS   +  +I+ R +    +  +   +  +L   G +
Sbjct: 187 ATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLMFADDMGHKSRLLEALLGTDGLQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +T+ S    +  L E  F   AL G++ Q  R+  LQ +R GR  V +ATDVAA
Sbjct: 247 QAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIGVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ +     E+ +HR GRTGRAGR G+++
Sbjct: 307 RGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAI 346


>gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
 gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 205/366 (56%), Gaps = 10/366 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++TSVQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   +  +L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAI 378
           P+   I
Sbjct: 370 PTGNTI 375


>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 510

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 215/397 (54%), Gaps = 32/397 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---------- 57
           P +I +AL+E GY + T VQE  +   +  +D+LVS+QTGSGKT AF L           
Sbjct: 10  PSII-KALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLHQLADLPP 68

Query: 58  ------------LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
                        AS    E  R+ PA  P  L + PTRELA+QV    +   A    V 
Sbjct: 69  APQAARTPNQERQASRARGERPRYQPAQ-PKMLVLTPTRELALQVTTATDKYGAYMRRVR 127

Query: 106 AVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
            V I GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+G
Sbjct: 128 VVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMG 187

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           F DDIE I+ ++P  R+ ++FSAT+   +  +AK    + + + IAS + +H +I  R  
Sbjct: 188 FIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHENIMQRVH 247

Query: 225 LV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V  LS ++  + ++LR      A++F +T+         L    F   AL G++ Q  R
Sbjct: 248 FVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHGDMHQGAR 307

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           +  L  +R G+ R+ +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G+
Sbjct: 308 NRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTGRAGRNGV 367

Query: 344 SVFVI--PQNMQ-RRAERLFREA-NVSVV--WEPAPS 374
           ++ ++   + MQ +R ER  ++   V VV  +EP  S
Sbjct: 368 AISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKS 404


>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
          Length = 690

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/505 (30%), Positives = 249/505 (49%), Gaps = 32/505 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+  +G+   TS+Q   + P L   E D++  +QTG+GKT AFGL +   +        P
Sbjct: 39  AVQAKGFETPTSIQRLTI-PRLLSGENDIIAQSQTGTGKTAAFGLPILQQI-------EP 90

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +   + ++ + PTRELAVQ   EL     +  + +    GG ++  + R L  G  IVVG
Sbjct: 91  SKEGVQSIILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLSRGVDIVVG 150

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR   L +  ++ +VLDEADEML++GF +D+E I+  + + RR+L+FSAT+ 
Sbjct: 151 TPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRVLLFSATMP 210

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++ Y ++   + + S++      +     V  +D+ +A+  I+        IVF
Sbjct: 211 ERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEVREADKFDAMTRIIDIEPDFYGIVF 270

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V      L    +    L G++SQ +R   L+  RD    + +ATDVAARGID+
Sbjct: 271 CRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILVATDVAARGIDV 330

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            +L  VI+  L  + E+ +HR GRTGRAG +G ++  I     RR   + R+    +  E
Sbjct: 331 SNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWMMRDIKADIKRE 390

Query: 371 PAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
             PS + I      +I  D   +  +   GD   +   LL  + P+      LR     L
Sbjct: 391 TLPSPQDIVAMKRAKIKDDLQEIVANESYGDYADIAAELLESYAPDVALGALLR-----L 445

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
               E+   +          + R+F V      + KG +   L++G +    AR ++ ML
Sbjct: 446 AFRSELDQSNY--------PEIRSFSV------DRKGKARLFLALGGRDGYTARRIVEML 491

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV 513
            R  G+  ++I  +RV  + + V V
Sbjct: 492 KRKCGLRDKNIDDVRVFENYSLVSV 516


>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 565

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G V+   +QE  L   LR  D++  A+TG+GKT+AFG+ L   +  E+    
Sbjct: 37  IADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPLLQRI--EHG--- 91

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP  L +APTRELA QV  +L     K G  V    GG +   + + L++G  +VVG
Sbjct: 92  -GKAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQIQALRDGVDVVVG 150

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   L++S ++ +VLDEAD MLDLGF  DIE I++  P +R+ ++FSAT+ 
Sbjct: 151 TPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPAERQTMLFSATMP 210

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  L++ Y  +   VR  + +E+     +          D+   +  +L+ +G    +
Sbjct: 211 GEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLARLLQANGRGLTM 270

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ +  R    L    F   A+ G+L Q +R  AL+  R G+  V +ATDVAARG+
Sbjct: 271 VFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVDVLVATDVAARGL 330

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ E   + E  +HR GRTGRAGR+G +V ++
Sbjct: 331 DVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLV 370


>gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 629

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 197/341 (57%), Gaps = 10/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L+E GY  ++ +QE  L   L  KDV+  A+TGSGKT AFG+ L   L  +
Sbjct: 11  NLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLLHKLQVK 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             R        AL + PTREL+ QV REL  L  ++    ++ +C GGV+   +   L++
Sbjct: 71  KFRVQ------ALILCPTRELSDQVARELRVLARFSHNIKILTLC-GGVAFGPQLGSLRH 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHI+VGTPGR+  H++   L++  +  +VLDEAD MLD+GF ++I  +L+  PK R+ L
Sbjct: 124 GAHIIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVPKNRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT +  I  ++K+ Q  A+ V   S    +  I+ R   V  +D+   +++IL    
Sbjct: 184 LFSATYTDEILDISKSIQNGAIHVKTTSTEIANK-IEERFYEVNNADKIKTVIDILSNFR 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+F +T+  V    K L E     +A+ G+L Q +R++ L    +    V +ATDV
Sbjct: 243 PQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           AARG+D+ +L +VI+ +L  + E   HR GRT RAG +G++
Sbjct: 303 AARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLA 343


>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
 gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
          Length = 638

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 220/420 (52%), Gaps = 15/420 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +   +D   
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNI---DDTLR 73

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 74  ---APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLESEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423
              P+ E + +R  ++          ++  +      LLAK  P      E +AA  L++
Sbjct: 371 VELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKLQPEGELDVETLAAALLKM 428


>gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase
           deaD homolog [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 629

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 199/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P  +   L   G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L  + R +P S    L +APTRELA Q+   L      T V VA+ +GG S++ + 
Sbjct: 61  VAQMLELDGRPAPKSV-RGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  LA +Y +  +RV ++   +    +      +A S++   ++ +
Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKPGLLIEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  +   ++ G  SQ +R  A+   + G  +V 
Sbjct: 240 LDKHRDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + +L + P+N +HR GRT RAG+ G ++ F  P  M
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
          Length = 554

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 126/383 (32%), Positives = 212/383 (55%), Gaps = 12/383 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M +F   N+   I +A+ E G+   T +Q+  +   L + +D++  AQTG+GKT AF L 
Sbjct: 1   MNLFSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLAL-AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVH 115
           +        D     S  + L  + PTREL +Q+ ++++        + +V + GG S+ 
Sbjct: 61  IL-------DMIDDTSRKIQLLVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSIT 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++   I+VGTPGR+ D I  K L+ S +  +VLDEADEML +GF+DD+E IL  
Sbjct: 114 DQIRSLRDKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSE 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P+ ++ L+FSAT++  +  ++K+Y  +  R+++ S N    +I +   +V    +  A+
Sbjct: 174 TPETKQTLLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYVVNYRQKKEAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++  +  + +I+FC TR         L ++ +   AL G+LSQ +R   +   R    
Sbjct: 234 KRLIDANPNQYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNI 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+
Sbjct: 294 DILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRK 353

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + +  +  + +  +P P  E I
Sbjct: 354 LKHIKVQTQIELKEKPIPKGEDI 376


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 261/533 (48%), Gaps = 38/533 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  +L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L +   L  EN++
Sbjct: 60  KLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEKL--ENNK 117

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            S A     L + PTRELA QV    + +    T +      GG     +   L+    +
Sbjct: 118 ESNAKV---LVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKRKTDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I+++  +VLDEADEML +GF +DIE+I+D  P+ ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  R + V    +  A+  IL     +  
Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYINVQRHHKLEALKRILEITN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LVI+ +   + E   HR GRTGRAGR G ++  + Q  +     L       +
Sbjct: 354 LDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKI 413

Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK----I 416
                P+ + I E+   +++   + + L     +EKK     ++D+L  K+   +    +
Sbjct: 414 EEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEKKALMIDILDILREKYSMNESNIAM 473

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-------------SRDNF 463
           AA  L I        E+ + +   +  DR    +R+ + G G               D+F
Sbjct: 474 AAINLAIGNKSFFLNEDESWIYKQNNSDR----NRSNRNGSGNNRMRNINRRNNYQNDSF 529

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +    +  + G   +     ++  +C S+ IN +SIG I++  + + V++  D
Sbjct: 530 E---TYKFNFGKMDRVRVSNIISSICNSTNINGRSIGKIQIFNEYSLVDLPKD 579


>gi|88854845|ref|ZP_01129511.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88816006|gb|EAR25862.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 757

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/358 (36%), Positives = 197/358 (55%), Gaps = 6/358 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---D 67
           I   L+  G  +   +Q A +   L  KDVL   +TGSGKT+AFG  L   L+  N   D
Sbjct: 383 ISRQLASMGAESPFPIQAATIPDVLAGKDVLGRGKTGSGKTIAFGAPLVERLMENNGGKD 442

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R      P AL +APTRELA Q+ R ++ +    G+     +GGV  +++   L  G  +
Sbjct: 443 RQM-GRKPRALILAPTRELAQQIDRTIQPIARSVGLFTTTIVGGVPQYKQVAALTRGVDV 501

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGR+ D I    L++S +K  VLDEAD M DLGF + ++ IL  + +  + L+FSA
Sbjct: 502 IIATPGRVEDLIEQGRLDLSQVKVTVLDEADHMCDLGFLEPVQRILRETSEGGQKLLFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   + TL K +  D     +A E++  S ID++ +L+   D+  AI+  L   G    
Sbjct: 562 TLDKGVATLVKEFLVDPAVHEVAGEDQASSTIDHKVLLIEQRDK-RAIIKQL-SAGTGKT 619

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  TRA      + L+       +L G+L+Q  R+  LQM+  G+  V +ATDVAARG
Sbjct: 620 LVFTRTRAFAEEMAEFLSMGGTPATSLHGDLNQSRRTRNLQMLTSGKVNVLVATDVAARG 679

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           I + D+ LVI A+     +  LHR+GRTGRAG+ G  V +IP+N +R+ + L   A +
Sbjct: 680 IHVDDISLVIQADAPEEYKTYLHRAGRTGRAGKAGTVVTLIPRNRRRKMDELLGRAEI 737


>gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50]
          Length = 569

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 651

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 39  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 93

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 94  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 152

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 153 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 213 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 273 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 333 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 392

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 393 VELPNAELLGKR 404


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 195/340 (57%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   +++Q A +   L  +DVL  AQTG+GKT AF L + S L          
Sbjct: 30  KALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPILSNLDVAQ------ 83

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA+QV    E +     GV V    GG     +   L+ G H+VVGT
Sbjct: 84  KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQLSALRRGVHVVVGT 143

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +PK +++ +FSAT+  
Sbjct: 144 PGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPKSKQIALFSATMPA 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++  Y +D   + + ++    ++   R ++V+   + +A+  IL     +  IVF 
Sbjct: 204 QIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRILETENFEGMIVFV 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L    +   A+SG+++Q +R   ++ +++G+  + +ATDVAARG+D+ 
Sbjct: 264 RTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDILVATDVAARGLDVD 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+
Sbjct: 324 RISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPR 363


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/405 (31%), Positives = 223/405 (55%), Gaps = 11/405 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++ +A+ + G+   + +Q+  +   L  KD++  A TG+GKT AF L L + L  + +
Sbjct: 10  PQIM-KAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLLNMLELDGE 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL I PTRELA QV  E+  L    G+  A   GG S  R+   + N A +
Sbjct: 69  -------VEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA-V 120

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D ++   + ++  K VVLDEADEMLD+GF DDI+ I +  P  R+ L+FSA
Sbjct: 121 VVATPGRLLDLLKSGKIELNP-KFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFSA 179

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+  AI  LA+        ++I  +   + +I     +V   +RD A++ +L Y     +
Sbjct: 180 TMPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPTKS 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC  +  V R  + L    +    L G++ Q++R   ++  + G   + IATDVAARG
Sbjct: 240 IIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAARG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ D+  V +  +  +PE+ +HR GRTGRAG++G+++ ++  +  ++  R+ +E   S+
Sbjct: 300 LDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVGSSL 359

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +  P+   ++  + Q+ + D +    +  +  ++V++L ++ D
Sbjct: 360 INKEIPTSAEVK-NEKQKSMLDMILSQEVSKEAIELVELLESQID 403


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 15/418 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL +   L    D   
Sbjct: 12  ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L+    I+VG
Sbjct: 68  QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKAPEILVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  + + L+FSAT+ 
Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + +  D   V I ++      ID   V V  +++ + +  ++       A+VF
Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +ATDVAARG+D+
Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367
             +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +   R  E L ++    +
Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLIKKKMSPL 367

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422
              P    +A   +  Q +L+     D + GD  K  D    LL  +  E IAA  L+
Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 420


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/337 (37%), Positives = 188/337 (55%), Gaps = 5/337 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L+E GY   T +Q   +   L  +D++  AQTG+GKT AF L L   LLA+    S
Sbjct: 15  LQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLAQPQMES 74

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+ AL + PTRELAVQV   +      TG+      GGVS+  +   L+NG  +++
Sbjct: 75  --QRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALKNGVDLLI 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   L++  L+ +V DEAD MLD+GF D+I  +L   P  R+ L+FSAT 
Sbjct: 133 ATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQTLLFSATC 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              +  L+K   +D   + +A  N   ++++ R   V  SDR  A+V ++L+  G   A+
Sbjct: 193 DDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTVD-SDRKLALVEHMLKVKGWAPAL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAARG+
Sbjct: 252 IFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQALVATDVAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ DL  VI+ E     E+ +HR GRTGRAG KG+++
Sbjct: 312 DITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAI 348


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 197/344 (57%), Gaps = 2/344 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   N   SP
Sbjct: 30  QSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 89

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++  L+ G  ++V 
Sbjct: 90  ARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 149

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++Y    V + +A+ N   + I   A  +    +  A+V++++  G    IVF
Sbjct: 210 NEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMPSDAKRAAVVHLVKSRGLNQVIVF 269

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVAARG+D+
Sbjct: 270 SNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDV 329

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R
Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEER 373


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 7/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL    Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +      E ++  
Sbjct: 13  IARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICELADWEENK-- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA Q+  ++  +     +      G  S  +++ +L+  +H+V G
Sbjct: 71  ----PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVCG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK R  ++FSAT+ 
Sbjct: 127 TPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y KD   + + +E     DI++     A  D+ + + ++L      + I+F
Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V + T  L    +    + G + Q++R + +   + G  R  IATDVAARGID+
Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            ++ LVI+ ++    E+ +HR+GRTGRAG +G ++ FV P
Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346


>gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 646

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 34  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 194/339 (57%), Gaps = 5/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++++ GY   T +Q   +   L  +D++  AQTG+GKT AFGL +   L+ + DR  PA+
Sbjct: 28  SVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQADR--PAN 85

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTREL  Q+G  L     KT + +   +GG S+++++  L+ G  I+V TP
Sbjct: 86  RTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEKGTDILVATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    +++S +  +VLDEAD+MLDLGF  D+  I    P KR+ L+FSAT+  A
Sbjct: 146 GRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQTLLFSATMPKA 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I+ LA N+  D ++V +    +    ++ Y   +   +D+ + +   L  +    +IVF 
Sbjct: 206 ISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDGRSIVFL 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  K L    F+V ++ G  SQ +R  AL+  +DG  +V +ATDVAARGID+P
Sbjct: 266 RTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAARGIDIP 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            +  V + +L   P+  +HR GRT RAGR G+++ F  P
Sbjct: 326 AVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAP 364


>gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 629

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1]
 gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
          Length = 503

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 192/341 (56%), Gaps = 2/341 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  GY   T +Q   +   L   D++  AQTG+GKT AFGL LA+ +LA  D  +P 
Sbjct: 33  KSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPLANRMLASADTAAPR 92

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL +APTREL  Q+ + L      + + VAV +GGVS+  + + L  G  I+V TP
Sbjct: 93  TT-RALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQIKRLARGTDILVATP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L +  +  +VLDEAD+MLDLGF   +  I    PKKR+ L+FSAT+   
Sbjct: 152 GRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPKKRQTLLFSATMPKQ 211

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y KD VRV +A   R    +D     VA +D+ + +++ L       ++VF  
Sbjct: 212 IEDLARAYLKDPVRVEVAPAGRTADKVDQCVHFVAQADKTDLLISCLSERAQDLSLVFAR 271

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  + L     +  A+ G  SQ +R  A++ ++ G  R+ +ATDVAARGID+P 
Sbjct: 272 TKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRILVATDVAARGIDIPG 331

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + +L   PE+ +HR GRT RAG  G +V F  P+ +
Sbjct: 332 VSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEI 372


>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
 gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
          Length = 457

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 210/383 (54%), Gaps = 12/383 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL L   + A  
Sbjct: 10  LPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLGLLQHIDAAL 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +        +L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+ 
Sbjct: 70  FQMQ------SLVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  ++   Q+D + + I + +   + I+ +    +   +   +  +L  +  
Sbjct: 183 FSATWPEAIAAISGRVQQDPLTIEIDTVDALPA-IEQQFFETSSHGKIPLLQKLLSQYQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+         L       ++L G+L Q++R   L    +G ARV +ATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L    
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
            + + W PAP   +I   +A+ +
Sbjct: 361 QLKLNWLPAPGNGSILPLEAEMV 383


>gi|159478160|ref|XP_001697172.1| hypothetical protein CHLREDRAFT_119793 [Chlamydomonas reinhardtii]
 gi|158274646|gb|EDP00427.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 384

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 202/353 (57%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ RG  +L  VQ  +L P    +DV+  A+TGSGKT+AF L +   LL  +    P 
Sbjct: 27  DALANRGIFSLFPVQAQVLEPIASGRDVVCRAKTGSGKTLAFALPVVENLLEVSGLRRPR 86

Query: 73  S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +      +P  + +APTRELA QV RE E +     + V    GGVS+  + R L+ G  
Sbjct: 87  TRPRKGRSPRCVVLAPTRELANQVSREFESVCP--ALKVDSFYGGVSISAQMRSLERGVD 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           +VVGTPGR+ D ++   L +  ++  +LDEAD MLD+GF  D+E IL + P     +R+ 
Sbjct: 145 VVVGTPGRVIDLMQRGSLKLDAVRYAILDEADSMLDMGFEQDMETILGAMPTAAANERQT 204

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNIL 239
           L+FSAT+   + ++AK YQ++ + +++  E       D   +LV     + + +A+  +L
Sbjct: 205 LLFSATLPKWVKSVAKRYQQNPLTIDLVGEENTGRLADTIRLLVQQVEGAQKMSALQGVL 264

Query: 240 RYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +G       AI+F +T+A        + E      AL G++SQ +R  AL + R+G+ 
Sbjct: 265 SMYGNTAGGGKAIIFVNTKAKADEVNLAVNE-FAPCDALHGDISQAQREKALSLFREGKY 323

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              +ATDVAARG+D+P+++LV+H ++  + E  LHRSGRTGRAG+ G +V + 
Sbjct: 324 AALVATDVAARGLDIPNVDLVVHYDVPQDNEAFLHRSGRTGRAGKTGTAVVLF 376


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 201/352 (57%), Gaps = 9/352 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F+++   P ++  A+ E GY   T +Q   +   +  +DV+ SAQTG+GKT AF L 
Sbjct: 1   MTTFKDLGLAPAILS-AVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               L     +    +AP  L + PTRELA QV  + E       +  A+  GGV   R+
Sbjct: 60  ALHRL----GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQ 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R++L+ GA +V+ TPGRL DH++ +  ++ ++  ++LDE D MLD+GF DD++ I+    
Sbjct: 116 RQELEAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCS 175

Query: 178 KK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K+ R+ L+FSAT+S  I  L     KD V V IA +      + +    V    + + +V
Sbjct: 176 KQGRQTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLV 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      + I+FC  +    R T+ L +H ++V A+  +L+Q+ R+ ALQ  +DG  +
Sbjct: 236 ALIESMEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIK 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +ATD+A+RG+D+ ++  VI+ ++  +PE+ +HR GRTGRA R+G +  ++
Sbjct: 296 ILVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATIL 347


>gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 626

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044]
 gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
 gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
          Length = 659

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 208/374 (55%), Gaps = 11/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 33  ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 88  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 266 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSV 367
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++
Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTI 384

Query: 368 VWEPAPSVEAIRER 381
                P+ E + +R
Sbjct: 385 PEVELPNAELLSKR 398


>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 643

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRER 381
               P+ E + +R
Sbjct: 370 EVELPNAELLSKR 382


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 202/352 (57%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P    E L+E GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ L   +  +
Sbjct: 9   SLPAAQLENLAELGYASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQI--D 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +F+      AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +
Sbjct: 67  VTQFTTQ----ALVLCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPISHQLDSLVH 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVGTPGR+ +H+R K +++  +K +VLDEAD MLD+GF D I+ ++  +P  R+ L
Sbjct: 122 APHIVVGTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  ++   Q++ V +    +     DI+ +    +  ++   +  +L    
Sbjct: 182 LFSATYPQGIERISARVQREPVTIE-TGDVSALPDIEQQFYETSRGEKLLLLQALLSNLQ 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VFC+T+         L+     V+AL G+L Q+ER   L    +   RV +ATDV
Sbjct: 241 PASCVVFCNTKRDCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDV 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           AARG+D+ +LE+V++ ELS +PE  +HR GRT RAG+KG++V FV P  M R
Sbjct: 301 AARGLDIKELEMVVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSEMVR 352


>gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1]
 gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 465

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 194/354 (54%), Gaps = 8/354 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+ +T +Q A L   L  +D++  A+TGSGKT AF LAL + L A   RF       A+
Sbjct: 27  GYLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDAR--RFEVQ----AM 80

Query: 79  AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAHIVVGTPGR+ D
Sbjct: 81  ILCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMD 140

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L +  L  +VLDEAD MLD+GF DDI  ++   P +R  ++FSAT    IT L+
Sbjct: 141 HLERGSLALGALNTLVLDEADRMLDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLS 200

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + ++   + +  E      I  R   V    R +A+  +L ++   + I FC+T+   
Sbjct: 201 RQFLRNPKEIRL-EETHDAGKIRQRFYEVTEDQRLHAVGLLLNHYRPASTIAFCNTKQQC 259

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI
Sbjct: 260 RDLLDVLTAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +++ +PE  +HR GRTGRA ++G ++ +   N   R   + +     + W+P
Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIEQAQGRELEWQP 373


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     +++ W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 639

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 167/553 (30%), Positives = 267/553 (48%), Gaps = 32/553 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE     
Sbjct: 18  ILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     ++      V V    GG     + R L+ G  IVV
Sbjct: 73  -LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 132 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I +      DI      V    ++ A+V  L       AI+
Sbjct: 192 PEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 252 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRI 423
              P+ E + +R  +R   +      ++  +      LL+K  P      E +AA  L++
Sbjct: 372 VELPNAELLSQRRLERFAAN--VQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALLKM 429

Query: 424 HRAGLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLS 472
            +     P  + P  +   R  F  RDD R   F   G   D  +           + + 
Sbjct: 430 AQGE--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 487

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLD 528
           VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  L+
Sbjct: 488 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 547

Query: 529 KGIQLKYLGGEKP 541
           K + ++ +G  +P
Sbjct: 548 KPMNMQLMGDAQP 560


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 120 LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 175

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 176 --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 233

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 234 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 293

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L+++   + I FC+T
Sbjct: 294 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 352

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 353 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 412

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P  
Sbjct: 413 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 472

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    D    L  P+    I G  K  +   DVL
Sbjct: 473 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 505


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL    Y+  T+VQE ++   L + D++V +QTGSGKT AF + L   +  E
Sbjct: 9   NLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCDLVHWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL + PTRELA QV  ++  +     V      G  S  R++ +L+  +
Sbjct: 69  ENK------PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQKS 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S L+ +V+DEADEML++GF D +E I+   PK R  ++F
Sbjct: 123 HIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244
           SAT+   I  L+  Y  + V + I S       I++    V   ++   ++ +I      
Sbjct: 183 SATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEVGEGEKKFLLLKDITVVENP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVFC+T+  V +  + L    +    L G L Q++R + +   + G  R  IATDVA
Sbjct: 243 DSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RGID+ D+ LVI+ ++ S+ E  +HR GRT RAG+ G ++ +I  +     E +     
Sbjct: 303 SRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIEDFIG 362

Query: 365 VSVVWEPAPSVEAI 378
           + +    AP  EA+
Sbjct: 363 IKISRAEAPKREAV 376


>gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 649

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 199/347 (57%), Gaps = 8/347 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               LA+ D     + P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CE--LADWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +H+VVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      ++I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341


>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 572

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 213/380 (56%), Gaps = 14/380 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           M +FE +     + EA+ + G+   + VQ+A + P L     D++  AQTG+GKT AFG 
Sbjct: 1   MNLFETLGLSAPLLEAIDDLGFERPSEVQQAAI-PVLLAVPTDMVALAQTGTGKTAAFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   L+   +  +       L +APTREL +Q+  EL+  YAK    V +    GG S+
Sbjct: 60  PLLH-LINPTEHITQG-----LILAPTRELCLQIASELKQ-YAKYMPQVHIVAIYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R+L+ GAHI+V TPGR+ D +R + ++I+H+   +LDEADEML++GF +DI  IL 
Sbjct: 113 EEQARNLKKGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P+++   +FSAT+   +  +AK +      + I  +N+   ++ +   +V    R  A
Sbjct: 173 ETPREKNTWLFSATMPTEVAKIAKEFMHHPKEITIGHKNQASDNVLHECYIVNGRQRYEA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +   + +  ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  +
Sbjct: 233 LKRLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++  +
Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETK 352

Query: 355 RAERLFREANVSVVWEPAPS 374
           R + + R    +  ++  PS
Sbjct: 353 RIKTIERIIQKTFEYKTIPS 372


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L       
Sbjct: 9   NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 62

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +P S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+  
Sbjct: 63  -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+
Sbjct: 122 PHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVA
Sbjct: 242 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R  
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 354

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                     ++E   +R   R +++P   ++++G ++  V+ L
Sbjct: 355 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 387


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/374 (36%), Positives = 205/374 (54%), Gaps = 16/374 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+  +G+   T +Q+ ++   LR + D++  +QTG+GKT AF L L   +  E       
Sbjct: 15  AVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPLIELIDEEIKEVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ I PTRELA+QV  E+  L  K  + V    GG  +  + R+L+ G HIVVGTP
Sbjct: 73  ----AIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIRNLRRGVHIVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++  +   +LDEAD MLD+GF +DIE IL  + +++R+LMFSATI   
Sbjct: 129 GRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEEKRVLMFSATIPRE 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKNAIV 249
           I  LA+ Y KD   + I   +     ++     V  + R + + +IL    ++G    IV
Sbjct: 189 ILRLARRYLKDYEVIRIQDRSLAPELVEQIYFEVRPNKRFSLLCSILDEKDFYG----IV 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+         L    + V AL+G++ Q+ R   L+  R G+ RV +ATDVAARGID
Sbjct: 245 FCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLVATDVAARGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + DL  VI+  +  NPE  +HR GRTGR G++G ++ FV P    +  + + R A V + 
Sbjct: 305 VKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRD-IERVARVKIK 363

Query: 369 WEPAPSVEAIRERD 382
               P+    R+RD
Sbjct: 364 EMAYPTEYGRRKRD 377


>gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 525

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 206/385 (53%), Gaps = 8/385 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E +P  I +A +  G+  L  VQ   +   L  +D+++ ++TGSGKT A+ L +     
Sbjct: 42  LECLPPTIRDAATRAGWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILG--- 98

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               R  P  A   A+ + PTRELA+QV RE   L A +G+  AV  GGV  H +    +
Sbjct: 99  ----RLDPRKAACQAMILVPTRELALQVSREALLLSADSGIRTAVAYGGVGYHAQLEAFR 154

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +V+GTPGR+ DH+    L++  L  +V DEAD ML +GF  D++ I +  P++   
Sbjct: 155 EGAQLVIGTPGRILDHLIRSSLSLKALSILVFDEADRMLSMGFYPDMKRIQEFIPREINA 214

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            + SAT    +  LA  + +    ++++ +    ++ ++   LV    ++ ++V I+   
Sbjct: 215 YLLSATFPSHVLRLAGEFLRKPELLSLSRDQIHVTETEHVYYLVPGMGKERSLVRIIEAE 274

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +AI+FC+T+A+V   + VL    +    LS ELSQ+ R   +  +R G  R  +ATD
Sbjct: 275 NPVSAIIFCNTKATVHFVSVVLKRFGYDADELSSELSQKAREKVMARIRSGLLRFLVATD 334

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+PDL  VI  E   +PE  +HR+GRTGR G  G+++ ++    Q R   + + 
Sbjct: 335 VAARGIDIPDLSHVIQYEPPEDPEAYIHRAGRTGRKGASGVAISLVAGMEQFRLRDIAKS 394

Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL 387
            ++ +     P  E +    +QR++
Sbjct: 395 FSIDIQERSLPKDEEVETTVSQRVI 419


>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
          Length = 457

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 465

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/329 (40%), Positives = 187/329 (56%), Gaps = 5/329 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T++Q A +   LR +DVL +AQTGSGKT AF L L  +LL  ++R  P  
Sbjct: 17  AIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLLQSLL--DNRDGPRQ 74

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               L + PTRELAVQVG  +  L  +    V VA+  GGVS++ +   L+ GA IVV T
Sbjct: 75  LH-GLVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMALRGGADIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I    L IS    +VLDEAD +LDLGF +++  IL   PK+R+ L FSAT  P
Sbjct: 134 PGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQRQNLFFSATFPP 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           A+  LA +      R+ + SE     DI  RA+ V +  R   + ++++ H  +  +VF 
Sbjct: 194 AVQKLADSILHQPARIEVLSEPASKPDIVQRAIAVDVPRRTMLLKHLIQEHQWRGVMVFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +       L  +  +  +  GELSQ  R+  L   R GR +  +ATDVAARGID+ 
Sbjct: 254 ATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQALVATDVAARGIDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGR 340
            L  V++ +L  +  +  HR GRTGRA R
Sbjct: 314 RLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342


>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 582

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/427 (33%), Positives = 231/427 (54%), Gaps = 24/427 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L   GY   T +Q   +   L  +DV+  AQTG+GKT AF L + + +  + 
Sbjct: 16  LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILANIDVK- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +P AL + PTRELA QV      +     G+ +    GG  + ++ + L+ G 
Sbjct: 75  -----VRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGT 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHI  + ++++ + AVVLDEADEML +GF DD++ IL  +PK+R++ +F
Sbjct: 130 HIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A  +  +   +++A+    + +I+    L   + +  A+  +L +   +
Sbjct: 190 SATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTE 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR S +   + L +   +   L+G++ Q+ R   +  ++ G   V +ATDVAA
Sbjct: 250 GVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362
           RG+D+  +  VI+ ++  + E  +HR GRTGRAGRKG ++ FV+P+   M R  ERL R+
Sbjct: 310 RGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQ 369

Query: 363 ANVSVVWEPAPSVEAIRERDAQR--ILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIA 417
              S+     PSV AI   DA+R     D +     D +Q + ++++D L    D   IA
Sbjct: 370 ---SIPEIKLPSVLAI---DAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIA 423

Query: 418 ---AGFL 421
              AG L
Sbjct: 424 VALAGML 430


>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
 gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
          Length = 434

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 205/385 (53%), Gaps = 16/385 (4%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLALAIA 81
           +T VQ A L   L+ +DV   A+TGSGKT AFG+ L        D+ +       AL + 
Sbjct: 1   MTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEFVTQALVLC 53

Query: 82  PTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGTPGR+ +H+
Sbjct: 54  PTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGTPGRIQEHL 112

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R + L +  LK +VLDEAD MLD+GF D I  ++  +P +R+ L+FSAT    I  ++  
Sbjct: 113 RKRTLVLDDLKVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIERISAK 172

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
            Q++ + V + SE    + I           R   ++++L ++   + +VFC+T+     
Sbjct: 173 VQREPLNVEVESEGEDPA-IQQVFFETTREKRLPLLISVLSHYQPASCVVFCNTKKDCQS 231

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ DLELV++ 
Sbjct: 232 VYDTLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLELVVNF 291

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           EL+ +PE  +HR GRTGRAG  G++V +   +   RA  +     + V W PA  V    
Sbjct: 292 ELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPSEMGRAHAIEDYLQIKVKWTPAEQV---- 347

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMV 404
            R    IL+  +    I G  K  +
Sbjct: 348 SRSTNAILEPEMVTLCIDGGRKAKI 372


>gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 629

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRVLRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ +++ 
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+   P F DSI       G E  +++V+    +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRV---PKFADSITNALAGPGIELFRRLVEEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 185/344 (53%), Gaps = 2/344 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL   GY N T +QE  +   L  KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPILQI 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  +         L + PTRELA+Q+          TG+   V  GGVS H +   L
Sbjct: 63  LYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVEAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D ++ K +++  LK +VLDEAD MLD+GF +D++ I+   P KR+
Sbjct: 123 KRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVKRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   I TLA        +V +   +     I      V  +D+ + +++IL+ 
Sbjct: 183 TLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIYFVDKNDKKSLLIHILKD 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + A+VF  T+    +  K L        A+ G  SQ  R  AL   ++   R+ +AT
Sbjct: 243 KKIETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTRILVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+ DL  VI+ EL + PE  +HR GRTGRAG  G+++
Sbjct: 303 DIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIAL 346


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/348 (37%), Positives = 190/348 (54%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I E + +  Y+  T VQ+  +      +D++  AQTGSGKT AF + + +TL+  
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   S   APLAL IAPTRELAVQ+ +E       T +   V  GGV V    R +
Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK 178
           Q G H++VGTPGRL D +  + +++++LK ++LDEAD MLD+GF  +I+ I+   D  PK
Sbjct: 479 QQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538

Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  LMFSAT    I  LA  +  + V + I      HSDI    + V  S + + ++ 
Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G    +VF  T+         L ++ F   ++ G+  QQ+R  AL   + G   V
Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IAT VAARG+D+ D++ VI+ +L    E  +HR GRTGR G KG ++
Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAI 706


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L+++   + I FC+T
Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    D    L  P+    I G  K  +   DVL
Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 197/347 (56%), Gaps = 9/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++   I EAL E  Y   T +Q+  +   ++ KD+L  A+TG+GKT AF L +   L + 
Sbjct: 7   DLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKLSSK 66

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E ++  P +    L + PTRELA QV + ++    K         GGVS + + + L++G
Sbjct: 67  ERNKKRPQTR--VLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALKSG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D      L++ H+  +V DEAD M D+GF  DI+ I+   P+KR+ L+
Sbjct: 125 IDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + +L  +  KD +R+ I  +N    +I  R +LV   DRD  +  +    G 
Sbjct: 185 FSATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILV---DRDKKMELLNEVFGV 241

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++   A+VF  T+ S  + +  L    F V AL G+ SQ  RS  L+  ++G+ ++ +AT
Sbjct: 242 ESIDQALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++
Sbjct: 302 DIAARGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLV 348


>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/339 (38%), Positives = 191/339 (56%), Gaps = 1/339 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI Q I +A+ E+GY   T +Q+  +   L  KD+L  AQTG+GKT +F + +   LL  
Sbjct: 7   NIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPIIQ-LLQA 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +      AL + PTRELA+Q+   L+     T V   V  GGV+   +   LQ G 
Sbjct: 66  DPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTMLQKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    L++  +K  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I TLA    K+ V++ I  E+     I+     V  +++   ++++LR    +
Sbjct: 186 SATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLRKAENQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL +      A+ G  SQ  R +AL   + G+ RV +ATD+AA
Sbjct: 246 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G +
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTA 344


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 201/366 (54%), Gaps = 8/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+++ GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 10  PKVLS-AVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPMLTRLEKGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P  L + PTRELA QV            + +A+ IGGVS   + + L+ GA +
Sbjct: 69  R---ARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKKLERGADV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R+ L FSA
Sbjct: 126 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244
           T+ P IT L + +    VRV ++      ++I  R V       D+   + N+++   A 
Sbjct: 186 TMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNLIKAEDAE 245

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R  +A+DV
Sbjct: 246 LKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  + + R  
Sbjct: 306 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 365

Query: 364 NVSVVW 369
              + W
Sbjct: 366 GTKIEW 371


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELDYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFCETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVTLEAE 381


>gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
 gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
          Length = 658

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 556

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             A  + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --AFVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTDAL-PPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAI 378
            P+  +I
Sbjct: 369 LPANSSI 375


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 192/344 (55%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L +SA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240
           T++P I  +   +   AV++ +A +      I+ + + +       + +D+   +  ++R
Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADKRAVLRALIR 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V    K L +H F    + G+L Q +R+  L   RDG   + 
Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDGFRDGTLHLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +A+DVAARG+D+P +  V + +L ++PE+ +HR GRTGRAGRKG
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKG 350


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 13/369 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  +       + W+ 
Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQ 369

Query: 372 APSVEAIRE 380
             S+ +I+E
Sbjct: 370 YDSL-SIKE 377


>gi|109897939|ref|YP_661194.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700220|gb|ABG40140.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 447

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 212/356 (59%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +G+AL  +G+   T +Q   +   L  KD++ S++TGSGKT+AF L     
Sbjct: 3   FSDLPLDHRLGKALEIKGFTEATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62

Query: 62  LLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +L +     P S   P  L +APTRELA QV  +L+WL AK  +  A+ +GG + + + +
Sbjct: 63  VLTKQ----PLSRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPK 178
            L++    VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I   +  +
Sbjct: 119 ALRHYPQFVVGTAGRIADHLAGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHR 178

Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIV 236
           KR+ +MFSAT+ + A+  L ++  K   R++I   + +H DI  R  L   ++ ++  + 
Sbjct: 179 KRQSMMFSATLDNAALHYLTQSMLKAPHRISIGISSAEHKDIQQRFFLADNVTHKERLLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +++     +  IVF +TRA   R + +L E     +ALSG+LSQ +R+N +     G+  
Sbjct: 239 HMINEKDHRQVIVFTATRADTERLSNLLKEQGLYSIALSGDLSQGQRNNIMSEFGRGQQH 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + + TD+A+RG+DL ++ LV++ +L    +  +HR GRTGRAG KG +V FV P++
Sbjct: 299 ILVTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKD 354


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 152/506 (30%), Positives = 263/506 (51%), Gaps = 22/506 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+  GY   + +Q   + P +  +D+L +AQTG+GKT AF L L +      
Sbjct: 13  LPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLLT------ 66

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            R   A A P  L +APTRELA+QV    +   A       + I GG  +  + + L+ G
Sbjct: 67  -RIDTAVAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKALKRG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGR+ DH+R K L +  L++VVLDEADEML +GF +D+ +IL  +P++R++ +
Sbjct: 126 PQVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQIAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+  Y  + V + I ++      I+    LV  +++ +A+  IL     
Sbjct: 186 FSATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSYWLVKGTNKLDALTRILEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+         L    ++  A++G+++Q+ R   ++ ++D +  + +ATDVA
Sbjct: 246 DGVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361
           ARGID+  +  VI+ ++  + E  +HR GRTGRAGR G ++ FV P  +++ R  E+  R
Sbjct: 306 ARGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRAIEKATR 365

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAA 418
           +    +      +V+  RE    +RI++      S +   K++V  LL ++  D + +A 
Sbjct: 366 QTIEPMTLPCRETVQKQREEKLVKRIVE--AAEQSPREGSKELVLRLLEENGIDAQHLAV 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             L +       P +  P    S   + + + +A     G R++      F ++VG K K
Sbjct: 424 TLLEMVHTEPTLPAQDFPEPRESAAGKGKRERKA-----GRREDPVPMESFHIAVGRKHK 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRV 504
            +   ++  +   +GI  Q IG I++
Sbjct: 479 VKPGNIVGAIANEAGIESQHIGRIQL 504


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 192/338 (56%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+S++GY   + +Q+  + P L  +DV+ +AQTG+GKT AF L + + L   + 
Sbjct: 12  PAVL-QAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALPIVNLLSETSK 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R SP +   AL + PTRELA QV   ++     T +   V  GGVS++ + + L+ G  I
Sbjct: 71  RPSPNNIK-ALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQMQGLRRGCDI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSA
Sbjct: 130 LIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIPAKRQTLLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LAK + ++ + +++  +N     +    V    S +   ++ +++ +  +  
Sbjct: 190 TFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIKLIKDNDWQQV 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 250 LVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  L  VI+ +L   PE+ +HR GRTGRAG  G +V
Sbjct: 310 IDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAV 347


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 203/359 (56%), Gaps = 12/359 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
           ++ + I  AL   G+V+ T +Q A +   +   D L  AQTG+GKT AF L L + L L 
Sbjct: 12  DLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLNKLDLG 71

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
           +         P A+ +APTRELA+QV  E++ L  K  G+ V    GG S+  + R L+ 
Sbjct: 72  QR-------KPQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALRA 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGR+ D I  + L +  +   VLDEADEML +GF DD+ +I++ +P+  + +
Sbjct: 125 GAHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRV 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ P +  +   + ++  R+++A  NR    ++ +  +V   ++D A+  +L    
Sbjct: 185 LFSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLLETEE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +IVF  TR    R    L+   F+  AL G++ Q  R   ++ ++ G   + +ATDV
Sbjct: 245 TDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERL 359
            ARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N   M R  ER+
Sbjct: 305 VARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERV 363


>gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42]
          Length = 469

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 10/336 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L + GY  +T +Q A L   L+ +D++  A TGSGKT AFGLA+        DR +P   
Sbjct: 29  LQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMV-------DRLNPRWF 81

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A   L + PTRELA QV  E+  L  A+  + V    GGV    +   L+NGAHIVVGTP
Sbjct: 82  AVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLENGAHIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L+I++LK +VLDEAD MLD+GF  DIE ++   P +R+ L+FSAT    
Sbjct: 142 GRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTLLFSATYPDG 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ + +    V +A+++     I  R   V   ++ + +  +L +    ++I FC+
Sbjct: 202 IAGLAQRFMRAPQMVKVAAQH-GAGKIAQRWYEVDAREKVDVVARMLAHFRPASSIAFCN 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAARGID+ D
Sbjct: 261 TKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGIDIAD 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  VI+ +++ +PE  +HR GRTGR   +G+++ ++
Sbjct: 321 LSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLV 356


>gi|145727|gb|AAA23674.1| deaD [Escherichia coli]
          Length = 571

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L  E     
Sbjct: 34  ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L+++   + I FC+T
Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    D    L  P+    I G  K  +   DVL
Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 204/364 (56%), Gaps = 8/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L   GY  +T++Q A L   L  +D++  A+TGSGKT AFGL L S++   N
Sbjct: 11  LPAPLLSNLDSLGYHQMTAIQAASLPAILEGRDLIAQAKTGSGKTAAFGLGLLSSI---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R+    A   L + PTRELA QV +E+  L  A   + V    GG  +  +   L++GA
Sbjct: 68  PRWFGVQA---LVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DH+  + LN++ +K +VLDEAD M+D+GF ++I  I+ + P+ R+ L+F
Sbjct: 125 HIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEIVGIVRACPRTRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + K+ V V + S ++    I+     V    R   +  ILR+    
Sbjct: 185 SATYPEDIRKASAQFLKNPVEVKVESLHKA-DHIEQWFYKVKPETRLETVSRILRHLRPT 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+ FC+TR       + L E  F  + L G+L Q+ER   L    +  A V +ATDVAA
Sbjct: 244 SALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L++VI+ +++ +PE  +HR GRTGR  + G+++ +   +  +R  ++      
Sbjct: 304 RGLDIKELDVVINVDVTHDPEVHIHRIGRTGRGEQHGLALTLATDSEAKRLVQIENYQQA 363

Query: 366 SVVW 369
            + W
Sbjct: 364 ELTW 367


>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
          Length = 435

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 209/371 (56%), Gaps = 13/371 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDV+  A+TGSGKT AF L +   LL    R+       AL + PT
Sbjct: 26  TKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + E L +  GV  AV +GG+ +H +   L+   HI++ TPGRL DH+   K
Sbjct: 80  RELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGRLVDHLENTK 139

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  +K +++DEAD +L++ F  ++  IL   P++RR L+FSAT++  +  L +   +
Sbjct: 140 GFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLLFSATMTKKVQKLQRASLR 199

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + V+V ++++ +    +    + + +  +D  +V+IL      N ++FC T  +  R   
Sbjct: 200 NPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNNFMIFCGTCNNTVRTAL 259

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  V L G++SQ +R  AL   R     + I+TDVA+RG+D+P +++VI+ ++ 
Sbjct: 260 LLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRGLDIPHVDIVINFDIP 319

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379
           ++ ++ +HR GRT RAGR G S+  I Q    + +R E+L  +  + +       V  ++
Sbjct: 320 THSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQLISK-QLPLYPTEEEEVMLLQ 378

Query: 380 ER--DAQRILQ 388
           ER  +AQRI++
Sbjct: 379 ERVSEAQRIVK 389


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/352 (35%), Positives = 196/352 (55%), Gaps = 18/352 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+   + + +A++  GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L   + 
Sbjct: 3   FENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPALNR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSV 114
           ++  + R +P S P  L + PTRELA QV       G+ L WL        A  +GG  +
Sbjct: 63  II--DRRPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLN------TACLVGGAPM 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + LQ    +VV TPGRL DH+  + + +S ++ ++LDEAD MLD+GF +DI+ I+ 
Sbjct: 115 FAQIKQLQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVA 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233
           ++P KR+ L+FSAT+   + ++A    +DA R+ I         I+ R +    L  +  
Sbjct: 175 ATPAKRQTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLMFADDLGHKSR 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L   G   A+VF +T+ S    +  L E      AL G++ Q +R+  L  +R G
Sbjct: 235 LLHALLGEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R  V +ATDVAARGID+  +  VI+ +     E+ +HR GRTGRAGR G+++
Sbjct: 295 RIGVLVATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAI 346


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L+++   + I FC+T
Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    D    L  P+    I G  K  +   DVL
Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408


>gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
 gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
          Length = 461

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 205/365 (56%), Gaps = 12/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ ++  +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ +    N  + W+ 
Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQNSPLRWDQ 371

Query: 372 APSVE 376
             S++
Sbjct: 372 LDSLK 376


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 197/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E GY   T +Q   + P L  KDVL  AQTG+GKT +F L +  TLLA   
Sbjct: 31  PKVL-KAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMI-TLLARG- 87

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 88  -RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKGVDV 146

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 147 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240
           T++P I  +   +     R+ +A +     +I+   ++   S +D            ++ 
Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRALID 266

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R  
Sbjct: 267 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 326

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++
Sbjct: 327 VASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 380


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 185/339 (54%), Gaps = 6/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T +Q   +   L+ +DVL  AQTG+GKT AF L +   L A   +   A
Sbjct: 15  KAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDRLAAGRAK---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL IAPTRELA QV    E       +  A+ IGGVS   + + L  G  +++ TP
Sbjct: 72  RMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQEQKLDRGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  D+E I   +P K++ L FSAT+ P 
Sbjct: 132 GRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPAKKQTLFFSATMPPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           IT L K +  D VR+  +        I    V +  +D   +  A+  ++      N IV
Sbjct: 192 ITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTALRELIGRAEINNGIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  V    K L +H F   A+ G+L Q  R   L+  R+G  ++  A+DVAARG+D
Sbjct: 252 FCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGELKLLCASDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P +  V + ++  + ++ +HR GRTGRAGR G +  ++
Sbjct: 312 IPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIV 350


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/511 (28%), Positives = 248/511 (48%), Gaps = 36/511 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ + G+   + +Q   +   L   DV+  AQTG+GKT+AFG  + S +  ++ 
Sbjct: 13  PKVL-QAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPMLSKITTKSK 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S      AL + PTRELA+QV  EL  +     V +    GG  + R+ R L+ G  +
Sbjct: 72  HIS------ALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRGMDV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHI+ K L++S+++ ++LDEADEMLD+GF +DIE I+ ++   R+ L+FSA
Sbjct: 126 VVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T+   I  L+  Y K  ++ + IA               +   DR  ++  IL      +
Sbjct: 186 TMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRILDVDEPSS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + L    + V  + G++ Q +R N L+  ++G     +ATDVAAR
Sbjct: 246 AIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +L  + E+ +HR GRTGRA ++G++  ++        +++ +     
Sbjct: 306 GIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTKSK 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLR 422
           +  +  P+V+ I E   + I +    +  I  D  K    +  + D E     +AA  ++
Sbjct: 366 IRRKEIPTVDDIYEAKYKNIEEQVKSI--ISEDNYKNFIPIATELDEEYNLVDVAAALMK 423

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           I                        D   +F     S    +      LS+G       R
Sbjct: 424 I----------------------IFDKELSFDYKENSLTVDEKDVRLFLSIGRMDNLTPR 461

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            L+  +  +S +    IG I +    TF+ V
Sbjct: 462 KLLKFISETSSVEAYEIGDIDILNKFTFINV 492


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 182/329 (55%), Gaps = 3/329 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   T +QE  +   L+ +DVL  AQTG+GKT +F L + S L +   R   A 
Sbjct: 15  AIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMISILASGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    E       + +A+ IGG +   + + L  G  +++ TPG
Sbjct: 72  MPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLDRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + ++ +K  V+DEAD MLD+GF  DIE I+   PK R+ L FSAT+ P I
Sbjct: 132 RLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +  D + + +A        +     LV   D+  A+ ++L+    KNA +FC+ 
Sbjct: 192 RRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRALRHLLQTEDVKNAFIFCNR 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  ++   K L  H F V AL G++ Q +R+  L+  + G   + + +DVAARGID+  L
Sbjct: 252 KRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLVCSDVAARGIDVQGL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             V + ++   P++ +HR GRTGRAG++G
Sbjct: 312 SHVFNFDVPLTPDDYVHRIGRTGRAGKQG 340


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 187/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +AL E+GY   T +QE  + P L  +D+L  AQTG+GKT AF L +   L   
Sbjct: 7   NIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPIIQQLYL- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL + PTRELA+Q+   L      TG+   V  GGV    +  +L+ G 
Sbjct: 66  NKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDELKTGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    +N+  ++  VLDEAD MLD+GF  DI+ +L   PK+++ L F
Sbjct: 126 DILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L+++  +D ++V +   +     I      V   ++ + ++N+L+    +
Sbjct: 186 SATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQEKKDLLINLLKKDKKQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    +  ++L +      A+ G  SQ  R  AL   +  + RV IATD+AA
Sbjct: 246 SVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRVLIATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  LELVI+ +L   PE  +HR GRTGRAG  G ++
Sbjct: 306 RGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTAL 345


>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
 gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
          Length = 462

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 197/372 (52%), Gaps = 13/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    Y  +T +Q   L P +  +DV+  A+TGSGKT AFGLA+ + L  +  R    
Sbjct: 17  ENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAMLNKLQVKRFRVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +L + PTRELA QV +E+  L      + V    GG     +   L++GAHIVVGT
Sbjct: 75  ----SLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQIGSLEHGAHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R   L +  +   VLDEAD MLD+GF+  ++ I+D  P KR+ L+FSAT   
Sbjct: 131 PGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPAKRQTLLFSATYPE 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248
            I  +AK    + +RV + +    H D        AL D   R  A+  +L  +   +A+
Sbjct: 191 QIQLIAKRIMHEPIRVTVETA---HDDSSIEQHFYALEDGRSRTEALQLLLLTYRPNSAV 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+         LA   F  VAL+G++ Q+ R   L    +  A + +ATDVAARG+
Sbjct: 248 VFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASILVATDVAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL+ V + +LS   +   HR GRTGRAG KG +  +     + + E L ++ +  V 
Sbjct: 308 DIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEMLEKQLSCVVE 367

Query: 369 WEPAPSVEAIRE 380
             P P+V  + E
Sbjct: 368 PSPLPNVSVLNE 379


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 10/355 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   + + + E+LS+  + + T +Q   +       D+L  AQTGSGKT AFG+ +
Sbjct: 1   MTTFEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    D  S       L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  VDIVKRSEDLQS-------LVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    IVVGTPGR+ DHI  + L +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  L+K++ KD   +   S+   + DI   A +   +++   +V  
Sbjct: 174 NHQTLLFSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEYATIARENEKLETLVGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G++V F+ P  M
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEM 348


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKECQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSIVPLEAE 381


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 200/376 (53%), Gaps = 7/376 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   L           
Sbjct: 21  ALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNL------DESLK 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   +E        V  V + GG     + R L+ G  +VVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    L++S LK +VLDEADEML +GF +D+E IL   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + +  D   V I S      DI     +   + ++ A++  L       AI+F  
Sbjct: 195 IRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDR 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +S+     
Sbjct: 315 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVEL 374

Query: 373 PSVEAIRERDAQRILQ 388
           P+ E I +R  ++  Q
Sbjct: 375 PNAELISQRRQEKFAQ 390


>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 415

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 195/345 (56%), Gaps = 2/345 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + I +A+ E GY+N T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L         A    AL + PTRELAVQ+G+  +     T +      GGVS + +   
Sbjct: 62  QLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  ++V TPGRL D  +   L+++HL  +VLDEAD+MLD+GF +D++ I+  +PK R
Sbjct: 122 LKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA+ + +D  +V ++  +    +++ R   V  +++ N +  +++
Sbjct: 182 QTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRLIK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N +VF  T+       K L +      A+ G+ SQ  R   L   ++    V +A
Sbjct: 242 EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+  L  VI+ +L + PE  +HR GRTGRAG  G+++
Sbjct: 302 TDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAI 346


>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 405

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 200/366 (54%), Gaps = 9/366 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++  YV  T +QE  +   L+ +D+L  AQTG+GKT AF L L   L    D   P +
Sbjct: 18  ALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLLQLLSERQDSPKPRT 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTREL +Q+    +       +   V +GGVS+  + + L  G   +V TPG
Sbjct: 78  A-RALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKALSRGVDFLVATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +++      V+DEAD MLD+GF  D+  ++   P+KR+ ++FSAT+   I
Sbjct: 137 RLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKRQSILFSATMPKEI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA++  KD V + I ++      ID R  LV   ++   +  +L        IVF  T
Sbjct: 197 ATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTTGNKPTMLAGLLDQPEFDRVIVFTRT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + S +R  + L +      A+ G  SQ  R  AL+ +R G+ARV +ATD+ ARGID+  +
Sbjct: 257 KRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARVLVATDILARGIDVDSI 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVSVV 368
             VI+ EL ++PEN +HR GRT RAG  G+++     ++  RA     ER F   +++ V
Sbjct: 317 SHVINYELPNDPENYVHRIGRTARAGSDGIAISFC--DLSERASLRNIER-FLGRSLTQV 373

Query: 369 WEPAPS 374
            +PAPS
Sbjct: 374 NDPAPS 379


>gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 584

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 203/356 (57%), Gaps = 14/356 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56
           M +FE +   + I +A+S+ G+   + +Q+  + P L     D++  AQTG+GKT AFG 
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAI-PTLLANGADMVALAQTGTGKTAAFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   L+  + R +       L ++PTREL +Q+  EL   YAK    V V    GG S+
Sbjct: 60  PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLPKVNVVAVYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL 
Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A
Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  +
Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++ +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P+
Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPK 348


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 208/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L+E GY+ +T VQ A L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAASLPAILEGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   + A            AL + PTRELA QV +EL  L  +     ++ +C GG  V 
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTANIKILTLC-GGQPVG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  
Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLDAITTLVLDEADRMLEMGFREDIDMIISH 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232
           SP++R+ L+FSAT   AI  +++  Q+D + V    E    SD   I+         ++ 
Sbjct: 174 SPQQRQTLLFSATWPQAIAHISQKIQRDPLTV----ETGDVSDLPAIEQTFYEAGAREKL 229

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A++ +L      + +VFC+T+         L         L G+L Q++R   L    +
Sbjct: 230 TALIGLLSERQPASCVVFCNTKRECDDIAYALENAQISAQPLHGDLEQRDRDQMLIRFAN 289

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  RV +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V ++  + 
Sbjct: 290 GSCRVLVATDVAARGLDIKALSMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSLVAPDE 349

Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377
             RA  L       + W P  ++++
Sbjct: 350 MIRAHALEDYLQQKLAWSPVSTLKS 374


>gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 481

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 8/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P  L + PTRELA+Q+  E+  +     +      G   ++ ++RDL
Sbjct: 66  IELEE------KEPQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR  DHI  + LN+  +K  VLDEADEML++GF D +E ++   PK R 
Sbjct: 120 KQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRV 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+   +  I+  
Sbjct: 180 TMLFSATIPEKIENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFFLLQRIIYK 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  ++G  +  + T
Sbjct: 240 EVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQFLVCT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI + ++  V++ E+    E+ +HR GRTGRAG++G+++  I  N  R  + +  
Sbjct: 300 DVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFLKDIED 359

Query: 362 EANVSVVWEPAPSVEAI 378
                +     PS+E +
Sbjct: 360 YIEKEIPKRKEPSLEEV 376


>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 434

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/356 (37%), Positives = 199/356 (55%), Gaps = 12/356 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +  F+      AL + P
Sbjct: 1   MTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD--FTTQ----ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV +EL  L  +A+   ++ +C GG  + ++   L +  HIVVGTPGR+ DH+R
Sbjct: 55  TRELADQVSKELRRLARFAQNIKILTLC-GGQPMGQQLDSLVHAPHIVVGTPGRIQDHLR 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    I  ++   
Sbjct: 114 KQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPTDRQTLLFSATYPEEIEQISARV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+   R  +A +  +   I+ R        R   ++ IL ++   + +VFC+T+      
Sbjct: 174 QRQPQRFEVA-DGVEEPAIEQRFYETTKEQRLPLLIAILGHYQPASCVVFCNTKRDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +LELV++ E
Sbjct: 233 FDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           L+ +PE  +HR GRTGRAG KG++V    PQ M  RA  +     + + W P+  +
Sbjct: 293 LAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMN-RANLIEDYLGMRIKWTPSDEI 347


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 251/515 (48%), Gaps = 68/515 (13%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE   I   I  AL+   Y + T VQE ++   L  KDV+V +QTGSGKTV++G+ L 
Sbjct: 10  KTFEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P  L + PTRELA+QV  +L  +     V      G  S   ++ 
Sbjct: 70  EKVDWEENK------PQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+  +HIVVGTPGR+ DH++     I  ++ +VLDEADEML++GF D +E I++  P +
Sbjct: 124 ELKQKSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAE 183

Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT+   I  +A  Y K D   + I +       I   +V V    ++  ++++
Sbjct: 184 RQTLLFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDL 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    A + ++FC+T+ +V+     L +    +  + G + Q++R + +   R GR R  
Sbjct: 244 LTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  V++ ++    E+ +HR+GRTGRAG+ GM++ ++    ++    
Sbjct: 304 VATDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNE 363

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +   A  +V+    P+   ++   +                EKK+               
Sbjct: 364 VKEYAGQTVIEVSLPTTRLVQSHKS--------------AFEKKL--------------- 394

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                        +E  P+  V  ++  R  ++ +         F G        G K+K
Sbjct: 395 -------------QERPPLKQVRSKELNRGITKVY---------FNG--------GKKKK 424

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             A   +  + +  GIN   IG I +Q ++T++++
Sbjct: 425 MRAVDFVGTIAKIPGINADDIGIITIQENVTYIDI 459


>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 649

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 166/560 (29%), Positives = 266/560 (47%), Gaps = 42/560 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE        
Sbjct: 21  ALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLLHNINAE------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     ++      V V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 135 GRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + +  D   V I S      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVEL 374

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAGFLRIHRA 426
           P  E + +R  ++   +      ++  +      LLAK       + E +AA  L++ + 
Sbjct: 375 PDAELLGQRRLEKFAAN--VQQQLESSDLDQYRALLAKLGTDEELEMETLAAALLKMAQG 432

Query: 427 GLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGS------------------ 466
               P  + P  +   R  F  RDD R    G G RD                       
Sbjct: 433 --ERPLILPPDPVRRPRREFNDRDDRRRNGNGFGDRDKSDRGDRGDRGDRPRRERRDVGD 490

Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
              + + VG     E R ++  +     I+ + IG I++    + +E+      + +   
Sbjct: 491 MELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGELLSHF 550

Query: 522 RRTVKLDKGIQLKYLGGEKP 541
            RT  L+K + ++ +G  +P
Sbjct: 551 TRTRILNKPLNMQLMGDAQP 570


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 10/366 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ ++PTRELA Q   E+  L       V V  GG  + R+  
Sbjct: 61  QNVDLDNPNIQ------AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   IVVGTPGRL DHI    + + H+K +VLDEAD+MLD+GF  DIE I++ +P +
Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   +  D  +V + S+      +D   +     ++ + +  I+
Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K A+VF  T+  V    K L    +    + G+L+QQ R N L   RDG+  + +
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV FV    M   R  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 357 ERLFRE 362
           ERL ++
Sbjct: 355 ERLTKK 360


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 200/376 (53%), Gaps = 7/376 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   L           
Sbjct: 26  ALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLHNL------DESLK 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   +E        V  V + GG     + R L+ G  +VVGTP
Sbjct: 80  APQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLRALRQGPQVVVGTP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+    L++S LK +VLDEADEML +GF +D+E IL   P + +  +FSAT+  A
Sbjct: 140 GRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAEHQTALFSATMPEA 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + +  D   V I S      DI     +   + ++ A++  L       AI+F  
Sbjct: 200 IRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFLEAEDFDAAIIFVR 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D+  
Sbjct: 260 TKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILIATDVAARGLDVDR 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +S+     
Sbjct: 320 ISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKMSIPEVEL 379

Query: 373 PSVEAIRERDAQRILQ 388
           P+ E I +R  ++  Q
Sbjct: 380 PNAELISQRRQEKFAQ 395


>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
          Length = 410

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 208/367 (56%), Gaps = 11/367 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL +  R+       AL + PT
Sbjct: 19  TRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQPQRY------FALILTPT 72

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + + L +  GV   V +GG+ +H +   L+   HI++ TPGRL DH+   K
Sbjct: 73  RELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTK 132

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSAT++  +  L +   +
Sbjct: 133 GFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLR 192

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + VRV ++++ +    +    + + +  +D  +V+IL      + ++FC T  +  R   
Sbjct: 193 NPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCGTCNNTVRTAL 252

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG+D+P +++VI+ ++ 
Sbjct: 253 LLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIP 312

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379
           ++ ++ +HR GRT RAGR G S+  + Q    + +R E+L  +  + +       V  ++
Sbjct: 313 THSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISK-QLPLYPTEEEEVMLLQ 371

Query: 380 ERDAQRI 386
           ERD + I
Sbjct: 372 ERDMKNI 378


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/340 (38%), Positives = 193/340 (56%), Gaps = 8/340 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GY+ +T +Q A L   L  +D++  A+TGSGKT AF LAL + L A  
Sbjct: 16  LPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLDAR- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +F       A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GA
Sbjct: 75  -KFDTQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+F
Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + ++   V +A E    S I  R   V+  +R +A+  +L ++   
Sbjct: 190 SATYPEGIAKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVSEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+  LE VI+ +++ +PE   HR GRTGRA ++G ++
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWAL 348


>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
 gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
          Length = 582

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 184/335 (54%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   + P L  +D++ +AQTG+GKT  F L L   L A +    PA 
Sbjct: 18  AITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQRLAATHPHPHPAG 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QVG  +  L     +   V  GGV V  +   L     I++ TPG
Sbjct: 78  RPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIEALTQRVDILIATPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  + + +++S ++ +VLDEAD MLD+GF  D+  +L   P +R+ L+FSAT +  I
Sbjct: 138 RLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAERQNLLFSATFNDDI 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +  D   V ++  N     + +   LV  + +   + +++     +  +VF  T
Sbjct: 198 KALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHLVESRQWQQVLVFTRT 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  +VLA+      A+ G  SQ  R+ AL   +DG  RV +ATD+AARGID+ +L
Sbjct: 258 KHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVLVATDIAARGIDISEL 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V ++
Sbjct: 318 PQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLV 352


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 195/344 (56%), Gaps = 2/344 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           ++++E GY + T +Q   +      +DV+ +AQTG+GKT AF L +   L+   N   SP
Sbjct: 28  KSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANSSASP 87

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++  L+ G  ++V 
Sbjct: 88  ARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQGCEVLVA 147

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S
Sbjct: 148 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPPQRQGLLFSATFS 207

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++Y    V + +A+ N     +   A  +    +  A+V++++  G K  IVF
Sbjct: 208 NEIRKLGRSYLNQPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVHLVKSRGLKQVIVF 267

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+   +R  + L     +  ++ G+ SQ +R  AL+  + G   V +ATDVAARG+D+
Sbjct: 268 SNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGELEVLVATDVAARGLDV 327

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 328 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEER 371


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 194/343 (56%), Gaps = 3/343 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N+  +  +  AL+E GY + T +QE  +   L  +D++  AQTG+GKT AF L +   
Sbjct: 3   FDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPILQN 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A + + +P   P  L +APTRELA Q+G         T     V  GGV    + R L
Sbjct: 63  MSAIHKKATPKK-PRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G   +V TPGRL D I+   + +S+++  VLDEAD MLD+GF +D+  I+D  PKKR+
Sbjct: 122 SRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+SP I+TLA+    +  +V +  +      I+     V   +++  ++++LR 
Sbjct: 182 SLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLRG 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+   ++ T++L +      A+ G  SQ  R+  LQ  + G+ RV +AT
Sbjct: 242 EHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+ D+  VI+ +L + PE+ +HR GRT RAG +G +
Sbjct: 302 DIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTA 344


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 127/359 (35%), Positives = 196/359 (54%), Gaps = 12/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 19  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 76  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 133 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 193 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 250 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  +       + W+
Sbjct: 310 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQ 368


>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
 gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           55989]
          Length = 457

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 369 PPANSSILPLEAE 381


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 189/340 (55%), Gaps = 7/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL    Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +      E ++  
Sbjct: 13  IARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICELADWEENK-- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA Q+  ++  +     +      G  S  +++ +L+  +H+V G
Sbjct: 71  ----PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVCG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK R  ++FSAT+ 
Sbjct: 127 TPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y KD   + + +E     DI++     A  D+ + + ++L      + I+F
Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDVLITENPDSCIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V + T  L    +    + G + Q++R + +   + G  R  IATDVAARGID+
Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            ++ LVI+ ++    E+ +HR+GRTGRAG +G ++ FV P
Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 210/375 (56%), Gaps = 12/375 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+   GY   T +Q   + P L+ +D+L  AQTG+GKT AF L + S L     R
Sbjct: 10  QKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLSRLEQGRAR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV        A   + VA+ IGGVS   +   +  GA ++
Sbjct: 70  ---ARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAKIMRGADVL 126

Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL D   RGK L ++ ++ +V+DEAD MLD+GF  DIE +    P  R+ L FSA
Sbjct: 127 IATPGRLLDFFDRGK-LLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILR-YHG 243
           T+ P IT L + +  + +R+ +A  +   S I  R  LVA    +D+   + N++R    
Sbjct: 186 TMPPEITRLTEAFLHNPIRIEVARASTTASTI--RQALVASRGHADKRETLRNLIRGAEN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAIVFC+ +  V+   + L +H F   AL G++ Q  R  +L   ++G   + + +DV
Sbjct: 244 LKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAILVCSDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G+++ ++ ++  +  +++    
Sbjct: 304 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQIQSLI 363

Query: 364 NVSVVWEPAPSVEAI 378
             ++ WE  P  +A+
Sbjct: 364 GKAIEWE-GPGFDAL 377


>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
           amylovora ATCC 49946]
 gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
          Length = 638

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 19  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + E+     G+ V    GG     + R L+ G  +VVG
Sbjct: 72  VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+ 
Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+   L       AI+F
Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSMTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++   
Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370

Query: 371 PAPSVEAIRER 381
             P+ E + +R
Sbjct: 371 ELPNAELLGQR 381


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/418 (34%), Positives = 215/418 (51%), Gaps = 15/418 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL +   L    D   
Sbjct: 12  ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L+    I+VG
Sbjct: 68  QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKAPEILVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  + + L+FSAT+ 
Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + +  D   V I ++      ID   V V  +++ + +  ++       A+VF
Sbjct: 188 KPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +ATDVAARG+D+
Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367
             +  V + ++  +P++ +HR GRTGRAG+ GMSV FV P  +   R  E L ++    +
Sbjct: 308 SGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 367

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422
              P    +A   +  Q +L+     D + GD  K  D    LL  +  E IAA  L+
Sbjct: 368 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 420


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 209/381 (54%), Gaps = 12/381 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL L   +  + 
Sbjct: 10  LPAAQLENLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQRI--DA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
             F   S    L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+ 
Sbjct: 68  GLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  ++   Q   + + I + +   + I+ +   V+   +   +  +L  H  
Sbjct: 183 FSATWPEAIAAISGRVQNAPLTIEIDTVDALPA-IEQQFFEVSQKGKIALLQKVLSQHKP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+         L       ++L G+L Q++R   L    +G ARV +ATDVA
Sbjct: 242 ASCVVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L    
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            + + W  AP+  +I   DA+
Sbjct: 361 QLKLNWVNAPASVSIVPLDAE 381


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 195/345 (56%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   + P L  +D+   AQTG+GKT +F L + + L     R
Sbjct: 3   QKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGRAR 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + +A+ IGGVS   + R L+ GA ++
Sbjct: 63  ---ARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGADVL 119

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 120 ICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 179

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGA 244
           + P I  LA  + ++  R+ +A  +     +  R  LVA  ++D    + + +I+R    
Sbjct: 180 MPPEIQKLADKFLQNPERIEVAPPSSTAKTVTQR--LVACQNKDYEKRSTLRDIIRAQDD 237

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+N L   +D +  + +A+DV
Sbjct: 238 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 298 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLV 342


>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 491

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 194/338 (57%), Gaps = 4/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++++GY   T +Q   +   L  +D++  AQTG+GKT AF L L   +L   +   SPA
Sbjct: 15  AIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLLQRILPFASASLSPA 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
             P+  L +APTRELA+QV   +   Y+K   + + C+ GGV +  +  +++ G  ++V 
Sbjct: 75  RHPVRVLMLAPTRELAIQVHESVRG-YSKYVPLRSACVYGGVDIKPQIAEIRLGVEVLVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  + LN   ++A+VLDEAD MLD+GF  D+  I++  P++R+ L+FSAT S
Sbjct: 134 TPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLPQQRQSLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    K  V + +A  N     I +R   VA   +   +V +LR       +VF
Sbjct: 194 EEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAEAKRALLVKLLRSSDFNQVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  + L        ++ G+ SQQER  AL+  +DG   V +ATDVAARG+D+
Sbjct: 254 TRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGSVLVLVATDVAARGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L  VI+ EL   PE+ +HR GRTGRAG+ G +V ++
Sbjct: 314 DELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLV 351


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 197/366 (53%), Gaps = 10/366 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ ++PTRELA Q   E+  L       V V  GG  + R+  
Sbjct: 61  QNVDLDNPNIQ------AIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   IVVGTPGRL DHI    + + H+K +VLDEAD+MLD+GF  DIE I++ +P +
Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   +  D  +V + S+      +D   +     ++ + +  I+
Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K A+VF  T+  V    K L    +    + G+L+QQ R N L   RDG+  + +
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRA 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV FV    M   R  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 357 ERLFRE 362
           ERL ++
Sbjct: 355 ERLTKK 360


>gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli 1357]
          Length = 437

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 12/369 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL 
Sbjct: 56  VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRYAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           ++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+ 
Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 352

Query: 376 EAIRERDAQ 384
            +I   +A+
Sbjct: 353 SSILPLEAE 361


>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
 gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
          Length = 471

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 210/370 (56%), Gaps = 9/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++++ G+   + +QE  +   L  KDV+  AQTG+GKT AF L +   L  +ND+  
Sbjct: 31  ILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQNL--QNDK-- 86

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              +  AL I PTRELA+Q+  E+ +   K+     +C+ GG S+ ++   L+    +++
Sbjct: 87  ---SIEALIITPTRELAMQISDEI-FKLGKSSRTRTICVYGGQSIKKQCDLLERNPQVMI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K L     + VVLDE+DEMLD+GF DDIE I +  P+  ++L+FSAT+
Sbjct: 143 ATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILLFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA    +D V ++IA  +  ++DI  R  ++   +R+ AI+ +L       +I+
Sbjct: 203 PAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKENHSKSII 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +  V    + L+   ++   L G++ Q+ R  +++  +   A V +ATDVA+RG+D
Sbjct: 263 FMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVATDVASRGLD 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  V +  L  N E+ +HR GRTGRAG+KG+++ ++     +  +R+ ++   S+  
Sbjct: 323 ISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQKDIGSSIEL 382

Query: 370 EPAPSVEAIR 379
              P++   R
Sbjct: 383 YEIPNMNEDR 392


>gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
 gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
          Length = 457

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 205/366 (56%), Gaps = 10/366 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   + ++L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQHLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAI 378
           P+   I
Sbjct: 370 PTGNTI 375


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 196/343 (57%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 196/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  KDVL  AQTG+GKT +F L +  TLLA   
Sbjct: 31  PKVL-KAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMI-TLLARG- 87

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 88  -RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQDKLIDKGVDV 146

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 147 LIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240
           T++P I  +   +     R+ +A +     +I+   ++   S +D            ++ 
Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEKRKVLRALID 266

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R  
Sbjct: 267 AEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLRFL 326

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ + +P++
Sbjct: 327 VASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRD 380


>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
 gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
          Length = 649

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 197/352 (55%), Gaps = 12/352 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +P+ +  ALS  G+ + T +Q   +   L   D+L  A TG+GKT AFGL ALA      
Sbjct: 12  LPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPALAG----- 66

Query: 66  NDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
                P   A   L +APTRELA+QV   LE       G+ V    GG     + RDL+ 
Sbjct: 67  ---IDPRQRAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDLER 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL DHIR   + +  ++  VLDEADEML++GF +DIE+IL+  P + +M 
Sbjct: 124 GTQVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQMA 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  +A+ + KD   V IAS+  Q ++I  +A  V+  ++  A+  +     
Sbjct: 184 LFSATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQKAWKVSGLNKLTALERLSETLD 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  TR         L    F+  AL+G++SQQ+R + +  +  G+  + IATDV
Sbjct: 244 YDAMIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINILIATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            ARG+D+P +  V++ +L  + E+ +HR GRTGRAGR G ++ F  P+ +++
Sbjct: 304 VARGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQ 355


>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
 gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
          Length = 660

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/424 (33%), Positives = 220/424 (51%), Gaps = 23/424 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS+ GY   + +Q+  +   L   DVL  AQTGSGKT AFGL L   +  +     
Sbjct: 18  ILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLLHNIDPD----- 72

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   L ++      V V    GG     + R L+ G  +VV
Sbjct: 73  -LKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQVVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S LK +VLDEADEML +GF DD+E I+   P + +  +FSAT+
Sbjct: 132 GTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQTALFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  + + + KD   + I S      DI      V+   ++ A+V  L       AI+
Sbjct: 192 PEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGMRKNEALVRFLESEDFDAAII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + IATDVAARG+D
Sbjct: 252 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q       ++  +  +   LLAK  P      E +AA 
Sbjct: 372 VDLPNAELLSQRRQAQFAAKVQQ------QLESSDLDLYRSLLAKVSPSEDVDMETLAAA 425

Query: 420 FLRI 423
            L++
Sbjct: 426 LLKM 429


>gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 487

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 216/411 (52%), Gaps = 19/411 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P    + + L +  Y  +T +Q A L   L   D++  A+TGSGKT AF L L + 
Sbjct: 32  FDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLLAR 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERR 119
           L           A  A+ + PTRELA QV +E+  L  +     V+A+C GG  +  +R 
Sbjct: 92  LDVRK------LAVQAMVLCPTRELADQVTQEIRRLARFEANIKVLALC-GGTPMRPQRD 144

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI F+    P +
Sbjct: 145 SLEHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSE 204

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  LA  + ++   V +  E   H  I  R   VA   R  A+  +L
Sbjct: 205 RQTLLFSATYPEGIARLAARFLREPQEVKLL-EQHAHGKIRQRFYEVAHPARLEAVATLL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+    + + FC+TR       ++L    F  +AL+GE+ Q+ER   L    +    V +
Sbjct: 264 RHFRPVSTLAFCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVLV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGR   +G ++ +     +RR   +
Sbjct: 324 ATDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVASI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL 407
            +       W    +++ + E DA   LQ P+    I G   D+ +  DVL
Sbjct: 384 AQRMGFEPEWH---ALDELVE-DANEPLQAPMTTLLILGGRKDKIRPADVL 430


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/332 (39%), Positives = 189/332 (56%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y N T +Q   +   L  +D+L  AQTG+GKT AF L +   L A N++  P  
Sbjct: 18  ALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQILAAANEKRQPKE 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL +APTRELAVQ+ + +E       +   V  GGV+  R+ + +  G  IVV TPG
Sbjct: 78  A-RALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKAMTAGVDIVVATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  K +N+S    +VLDEAD MLD+GF  D+  I+ + P++R+ L+FSAT+  +I
Sbjct: 137 RLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQRQSLLFSATMPSSI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA    ++ VRV +  E      ID R + V    +   +  +L        IVF  T
Sbjct: 197 QHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELLAKLLDNSELSRVIVFTRT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R ++ L +      A+ G  SQ  R  AL M R+G+ARV +ATD+AARGID+ D+
Sbjct: 257 KHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVLVATDIAARGIDVSDI 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ EL + PE+ +HR GRT RAG+ G+++
Sbjct: 317 THVINYELPNEPESYVHRIGRTARAGKSGIAL 348


>gi|323357599|ref|YP_004223995.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273970|dbj|BAJ74115.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 746

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 4/364 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68
           I  AL+  G  +   +Q A + P L  +DVL   +TGSGKT+AFG  L   +L      R
Sbjct: 365 IVRALAALGAASPFPIQAATVKPILEGRDVLARGRTGSGKTIAFGAPLVERILRAQAGQR 424

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                AP AL +APTRELA+Q+ R ++ +    G+      GGV   R+   L+ G  I+
Sbjct: 425 REFGRAPKALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQARQVGALKKGVDII 484

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ D ++   L++S ++  VLDE D M +LGF + ++ IL ++    + L+FSAT
Sbjct: 485 IGTPGRIEDLLKQGKLDLSQVQVTVLDEGDHMCELGFLEPVQRILRATADGSQKLLFSAT 544

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  L   +  +     +A E++    I++R +++   D+   + +++   G    +
Sbjct: 545 LDREVAALVDEFLVEPAVYEVAGEDQDSGTIEHRVLVIEHRDKAQILDSLVDRDG--KTL 602

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TRA      +   E     VAL G+L+QQ+R+  L+ +  GR  V +ATDVAARGI
Sbjct: 603 VFARTRAYAEMLAEQFDEAGIAAVALHGDLNQQKRTRNLEKLTSGRVNVLVATDVAARGI 662

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            + D++LVI A+     +  LHRSGRTGRAGR G  V +I +  QRR   L   A +   
Sbjct: 663 HVDDIDLVIQADAPDEYKTYLHRSGRTGRAGRSGTVVTLITRQRQRRMTELLDRAEIDAP 722

Query: 369 WEPA 372
           +E A
Sbjct: 723 FESA 726


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 195/356 (54%), Gaps = 6/356 (1%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+ FEN+   P ++ + L+  G    T +Q   +   +R +D+L  AQTG+GKT AFGL 
Sbjct: 1   METFENLGLAPMLL-KNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + + +LA   R +P +   AL +APTRELA Q+   L        V +   +GG S++ +
Sbjct: 60  MLTRILAYGKRPAPKTV-RALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G  +++ TPGRL D I  + L +S  K +VLDEAD+MLD+GF   +  I    P
Sbjct: 119 AEKLSKGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   +  LA +Y  D +RV +A+  +    ID         ++   +  
Sbjct: 179 AERQTLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  H  + A+VF  T+    + TK+L +  F V A+ G  SQ +R  AL   R    +V
Sbjct: 239 YISRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +ATDVAARG+D+P +  V + +L + PEN +HR GRT RAGR G +V F  P  M
Sbjct: 299 LVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEM 354


>gi|212704221|ref|ZP_03312349.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
 gi|212672425|gb|EEB32908.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
          Length = 578

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 7/376 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E +P+ I  A    G+ +L  VQ   L   L  +D++V ++TGSGKT  + L L   L 
Sbjct: 57  LETLPETIAAACGRAGWTSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPLVPRLD 116

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E        A  AL + PTRELAVQV  E   L+  TG+      GGV   ++   L++
Sbjct: 117 PE------LHAVQALILVPTRELAVQVEHEARTLFEGTGIRPVAVYGGVGYKKQMDALRD 170

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RM 182
           GA +VVGTPGR+ DH+  + L++  L  +V DEAD ML +GF  D++ +    P++R   
Sbjct: 171 GAQLVVGTPGRVLDHLLRRTLSLEDLDVLVFDEADRMLSIGFYPDMKEVQRYLPRRRIHT 230

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            MFSAT  P +  LA  +  +   ++++ +    +++ +        D+D  +V +L   
Sbjct: 231 SMFSATYPPHVLKLAGEFLTEPSMLSLSQKEVHVAEVQHLFCQSRPMDKDRVLVRLLETE 290

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +AI+FC+T+A+V   T VL    +    LS +LSQ  R   L  +R G  +  +ATD
Sbjct: 291 NPASAIIFCNTKANVHYITGVLQGFGYNADELSADLSQARREAVLDKIRQGSLQYLVATD 350

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+P L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   ER+ R 
Sbjct: 351 VAARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDIMQRMELERIARH 410

Query: 363 ANVSVVWEPAPSVEAI 378
             +++   PAP+ E +
Sbjct: 411 YKIALREIPAPTDEDV 426


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 157/540 (29%), Positives = 260/540 (48%), Gaps = 54/540 (10%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  +LS +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L A+N  
Sbjct: 60  QSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-ADNKE 118

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +       L + PTRELA QV    +   +++     + I GG     +   L+    +
Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKVDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     ++ +  +VLDEADEML++GF +DIE+I+D  PK ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  + + V    + +A+  IL  +  +  
Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LV++ +   + E   HR GRTGRAGR G ++  +    +     L       +
Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENSTRTKI 413

Query: 368 VWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDV---LLAKH--DPEKIAA 418
                PS + I E+  ++++++     L  +  + ++  ++DV   L  KH  D   IA 
Sbjct: 414 EEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDDSNIA- 472

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS---------------- 459
                          +  ++LV G   F    DDS   K                     
Sbjct: 473 ---------------MAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSN 517

Query: 460 -RDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            R+NF+  S+  +    G         ++  +C S+ IN +SIG I++  D + V++  D
Sbjct: 518 RRNNFQNDSFETYKFDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 190/342 (55%), Gaps = 12/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +AL   GY   T +Q   +   L  +DVL  AQTG+GKT AF L   S + L+ +D    
Sbjct: 30  QALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTLSNIDLSLSD---- 85

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              P  L +APTRELA+QV       YA+      V    GG     + R L+ G H+VV
Sbjct: 86  ---PQVLVLAPTRELAIQVAEAFH-TYAEFMPDFHVLPIYGGQDYGVQIRMLKRGVHVVV 141

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R   LN+  LK +VLDEADEML +GF DD+E+ILD +P+ R++ +FSAT+
Sbjct: 142 GTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALFSATM 201

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A+ Y K    + I ++      I  R  +V    + +A+  IL        I+
Sbjct: 202 PQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHHKLDALTRILEVEPFDGIII 261

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    +   AL+G++ Q  R   ++ ++DG   + IATDVAARG+D
Sbjct: 262 FVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAARGLD 321

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +  +  VI+ ++ ++ E+ +HR GRTGRAGR G ++ FV P+
Sbjct: 322 VDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPR 363


>gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 643

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 226/425 (53%), Gaps = 25/425 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L + +        
Sbjct: 22  IIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNI-------D 74

Query: 71  PA-SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  IV
Sbjct: 75  PSLKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQLRALRQGPQIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P + +  +FSAT
Sbjct: 135 VGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + +  +   V I S      DI      V    ++ A+V  L       AI
Sbjct: 195 MPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFLEAEDFDAAI 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 255 IFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 315 DVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRNIERTMKLTIP 374

Query: 369 WEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAA 418
               P+ E +  R     A R+ Q    L+S   D+ +    LLAK  PE+      +AA
Sbjct: 375 EVELPNAELLGTRRLAKFAARVQQQ---LESSDLDQYR---ALLAKLQPEEEQDMETLAA 428

Query: 419 GFLRI 423
             L++
Sbjct: 429 ALLKM 433


>gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 469

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 189/336 (56%), Gaps = 10/336 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L + GY  +T +Q A L   L+ +D++  A TGSGKT AFGLA+        DR +P   
Sbjct: 29  LQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMV-------DRLNPRWF 81

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A   L + PTRELA QV  E+  L  A+  + V    GGV    +   L+NGAHIVVGTP
Sbjct: 82  AVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIASLENGAHIVVGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L+I+ LK +VLDEAD MLD+GF  DIE ++   P +R+ L+FSAT    
Sbjct: 142 GRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAERQTLLFSATYPDG 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ + +    V +A+++     I  R   V   ++ + +  +L +    ++I FC+
Sbjct: 202 IAGLAQRFMRAPQMVKVAAQH-GAGKIAQRWYEVDAREKVDVVARMLAHFRPASSIAFCN 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAARGID+ D
Sbjct: 261 TKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAARGIDIAD 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  VI+ +++ +PE  +HR GRTGR   +G+++ ++
Sbjct: 321 LSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLV 356


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 196/346 (56%), Gaps = 4/346 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L +++ + +    P+ AL +APTRELA+Q+G   E       +  AV  GGVS + + +
Sbjct: 62  NL-SKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK 
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++L
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +
Sbjct: 241 RDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|149197292|ref|ZP_01874344.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
 gi|149139838|gb|EDM28239.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
          Length = 462

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 205/364 (56%), Gaps = 8/364 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY  +T +QE  L   L  KD++  A+TG+GKT AFGL + S L+ ++ R         L
Sbjct: 23  GYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVLSKLVLDDYRIQ------VL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR-ERRDLQNGAHIVVGTPGRLCD 137
            + PTREL  QV + +  L      +  + +GG    R + + + +GAHIVVGTPGR+  
Sbjct: 77  ILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQMKSVAHGAHIVVGTPGRILK 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L++ H++ +VLDEAD MLD+GF+D+I+ I+D + K+R+ L+FSAT    I T+A
Sbjct: 137 HLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNKQRQTLLFSATYPKKIATIA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K   KD +R+ + S+  + S I+     V + S R   +  +L    +++A+VFC+T+  
Sbjct: 197 KRVMKDPLRIELDSQVHEESTIEQHFYKVTSESQRLLGLQLLLDKFKSESAVVFCNTKQE 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K L++  F  +AL G+L Q++R   L    +    V +ATDVAARG+D+  ++LV
Sbjct: 257 AKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAVLVATDVAARGLDIDSIDLV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+  +S + E  +HR GRTGRAG+ G++  +  Q    +   L       +  E  P   
Sbjct: 317 INYHISRDFEVHVHRIGRTGRAGKNGIACSLHSQKEAHKISLLQEFLGQEIESETLPDRS 376

Query: 377 AIRE 380
            ++E
Sbjct: 377 VLKE 380


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +P 
Sbjct: 16  KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 68

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 69  SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+FSAT+  
Sbjct: 129 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 189 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 249 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R         
Sbjct: 309 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 354

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++++G ++  VD L
Sbjct: 355 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 387


>gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 463

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL L   + A   +      
Sbjct: 24  LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 79

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 80  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 136

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 137 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     ++      + S + + +  +L  +   + +VFC+
Sbjct: 197 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 255

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     +AL G+L Q++R   L    +G  R+ +ATDVAARG+D+  
Sbjct: 256 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 315

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG+ G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 316 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 374

Query: 372 APSVEAI 378
            P+V  I
Sbjct: 375 PPAVTTI 381


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 196/347 (56%), Gaps = 8/347 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               LA  D     + P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y +    + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAI 341


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 203/366 (55%), Gaps = 8/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+++ GY   T +Q   +   L  KD+L  AQTG+GKT +F L + + L  EN 
Sbjct: 10  PKVLS-AVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTRL--ENG 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R + A  P  L + PTRELA QV            + +A+ IGGVS   + + L+ G  +
Sbjct: 67  R-ARARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKKLERGVDV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R+ L FSA
Sbjct: 126 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244
           T+ P IT L + +    VRV ++      ++I  R V       D+   + N+++   A 
Sbjct: 186 TMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAE 245

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R  +A+DV
Sbjct: 246 LKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  + + R  
Sbjct: 306 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 365

Query: 364 NVSVVW 369
              + W
Sbjct: 366 GNKIEW 371


>gi|238783510|ref|ZP_04627532.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
 gi|238715565|gb|EEQ07555.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
          Length = 612

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 257/539 (47%), Gaps = 47/539 (8%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102
           AQTGSGKT AFGL L   + AE        AP  L +APTRELA+QV   L        G
Sbjct: 2   AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V V    GG     + R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E I+   P + +  +FSAT+  AI  + + + KD   V I S      DI   
Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175

Query: 223 AVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              V    ++  A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L  ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDE 400
           G ++  +    +R  + + R   +++     P+ E + ER   R+ Q    +   ++  +
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGER---RLAQFAAKVGQQLESSD 352

Query: 401 KKMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPEEI-TPVSLVSGRDRFRDD- 449
             +   LLAK  PE+      +AA  L++    R  +  PE    P    + RD   +D 
Sbjct: 353 LDLYRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDR 412

Query: 450 --------------SRAFKVGGGSRD------NFKGSSWFSLSVGSKQKAEARWLMPMLC 489
                          RA    GG R       +      + + VG     E R ++  + 
Sbjct: 413 GNDRGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIA 472

Query: 490 RSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
               I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R
Sbjct: 473 NEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 531


>gi|256831112|ref|YP_003159840.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580288|gb|ACU91424.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 741

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 207/381 (54%), Gaps = 8/381 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ +  A +   +  L  VQ   +   L  +DV+V +QTGSGKT AF       LL  
Sbjct: 29  DLPQTLQAAATRLNWAELMPVQVQTIPYMLGGQDVMVQSQTGSGKTGAF-------LLPI 81

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            DR      AP AL + PTRELAVQV R+ E L  + G+      GGV    + + L++G
Sbjct: 82  LDRIETGLGAPQALVLVPTRELAVQVTRDAEELGREAGIKPLSIYGGVGYKGQIQGLEDG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +++GTPGR+ DH+    LN+  LK +V DEAD ML +GF  D++ +    P+  +  M
Sbjct: 142 AQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRGLQSAM 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  LA+ + KD V V+++      SD+ +    V    +   +V I+     
Sbjct: 202 FSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKIIEQENP 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+T+A V   + VL    + V  +S +L+Q  R   L+ +R  + +  +ATDVA
Sbjct: 262 ASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  V   +   + E  +HR+GRTGRAG  G+++  +    +   E++ ++ +
Sbjct: 322 ARGIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQIAKKFS 381

Query: 365 VSVVWEPAPSVEAIRERDAQR 385
           + +V +P P+ E +    +QR
Sbjct: 382 IPMVEQPLPADEELETLISQR 402


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L     R
Sbjct: 11  QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA ++
Sbjct: 71  ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 128 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243
           + P I  LA  + ++  R+ +A        +  R   VA   +D     +LR        
Sbjct: 188 MPPEIQKLADRFLQNPERIEVAKPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+DV
Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLV 350


>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 631

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  +     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 AELPNAELLGKR 382


>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 443

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 192/344 (55%), Gaps = 8/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++ EA  + G+ N T +Q   +   L  KD++  AQTGSGKT AF + +   LLA+  
Sbjct: 22  PQIV-EACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQALLAK-- 78

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                S    L +APTRELAVQ+  ++E L A  GV  AV +GG+    +   L    HI
Sbjct: 79  ----PSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHI 134

Query: 128 VVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VGTPGR+  H+   KG N+  LK  V+DEAD +L + F ++I  IL   PK R   +FS
Sbjct: 135 IVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTFLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  L +    D V++ +A++      +    + +    ++  +  IL      +
Sbjct: 195 ATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYKHKECYLTYILNELAGNS 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F ST A+ ++   +L    F+ + ++G++ Q +R ++L   +     + +ATDVAAR
Sbjct: 255 VIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P ++LVI+ ++  + +  +HR GRT RAGR G +V ++ Q
Sbjct: 315 GLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQ 358


>gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 462

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 189/343 (55%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ G     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D   
Sbjct: 25  ICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLDRVFDDADIPE 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL IAPTRELA+QV  +LE   A   + V    GG     +   +++GA +VVG
Sbjct: 85  LDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQIESGADVVVG 144

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSA 187
           TPGRL D  + K L+  H+  +VLDEADEMLDLGF  DIE IL     +P +   ++FSA
Sbjct: 145 TPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNPHQ--TMLFSA 202

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAK 245
           T+   I TLA+ + +  V +   S + QH+    R V       D   V    L+  G  
Sbjct: 203 TMPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGKALQAEGRG 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S +   + LA+  F+V A+ G+L Q+ R  +L   R+G   + +ATDVAA
Sbjct: 263 RTIIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEILVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++
Sbjct: 323 RGIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLV 365


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +P 
Sbjct: 2   KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 54

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 55  SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 114

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+FSAT+  
Sbjct: 115 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 174

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 175 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 234

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 235 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 294

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R         
Sbjct: 295 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 340

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++++G ++  VD L
Sbjct: 341 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 373


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 189/334 (56%), Gaps = 2/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPA 72
           A+SE+GY N T +Q+  +   L+  DV+  AQTG+GKT  F L +   L +  N   SPA
Sbjct: 19  AISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQKLESHANSSTSPA 78

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  AL + PTRELA+QV   +        +  AV   GV++  +   +++G  I+V T
Sbjct: 79  KHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQIAAIRSGVEILVAT 138

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K L +S ++ ++LDEAD MLD+GF  DI+ I+   P +R+ LMFSAT S 
Sbjct: 139 PGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLPDQRQNLMFSATFSE 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    K  + + +A +N     I +    V   ++   ++++++    +  ++F 
Sbjct: 199 EIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQEFLIDMIKKKNLQQVLIFT 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L         + G+ +Q +R+ AL   + G  R+ +ATDVAARG+D+ 
Sbjct: 259 RTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRILVATDVAARGLDIE 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L  VI+ EL +NPE+ +HR GRTGRAG KG ++
Sbjct: 319 ELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAI 352


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 197/347 (56%), Gaps = 8/347 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               LA  D     + P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + + +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 184/344 (53%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   ++R        AL + PTRELA+Q+G   E     TG+   V  GGV    +  +L
Sbjct: 63  LYKTDNR----KGIKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDEL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    +N+  L   VLDEAD MLD+GF  DI  IL   P KR+
Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +   D  +V +   +     I      V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    +  + L++      A+ G  SQ  R  AL   +    RV IAT
Sbjct: 239 PSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342


>gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
          Length = 457

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQLFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  
Sbjct: 250 TQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     +++ W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQT 368

Query: 372 APSVEAIRERDAQ 384
            P   +I   +A+
Sbjct: 369 PPVNSSIVPLEAE 381


>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
 gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
           fergusonii ATCC 35469]
          Length = 457

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     ++      + S + + +  +L  +   + +VFC+
Sbjct: 191 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     +AL G+L Q++R   L    +G  R+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG+ G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 368

Query: 372 APSVEAI 378
            P+V  I
Sbjct: 369 PPAVTTI 375


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 13/369 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + +   N RF    A
Sbjct: 33  LESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNPI---NPRFFGCQA 89

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPG
Sbjct: 90  ---LVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPG 146

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I
Sbjct: 147 RIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRRQTLLFSATYPVGI 206

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFC 251
             L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC
Sbjct: 207 KQLSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+ 
Sbjct: 264 FTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDID 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  +       + W+ 
Sbjct: 324 ALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEELQKAPLNWQQ 383

Query: 372 APSVEAIRE 380
             S+ +I+E
Sbjct: 384 YDSL-SIKE 391


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 224/420 (53%), Gaps = 12/420 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++ E GY   + +Q   +   L  +DV+  AQTG+GKT AFG+ +   +  + ++  
Sbjct: 16  ILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPIIDLVDPDFNKVQ 75

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
                 A+ + PTRELAVQV  E++ L      + +V I GG S+ R+ R L+ G  IVV
Sbjct: 76  ------AVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRVLRKGVQIVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI    L + +   +VLDEADEMLD+GFRDDIE IL   P+KR+ + FSAT+
Sbjct: 130 GTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKRQTVFFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I  L + YQ +   + +A +      I+     V  S +   +  ++  +    ++V
Sbjct: 190 AKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARLMNVNNYALSVV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+      T+ L        AL G+LSQ +R   +   R G   V +ATDVAARGID
Sbjct: 250 FCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVATDVAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + ++E V + +L  + E+ +HR GRTGRAG+ G ++ FV  +    +   L R    S+ 
Sbjct: 310 VDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFGKIRDLERFTKASIA 369

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEKIAAGFLRIH 424
               PSV  + E    + ++D   + S + D    E+ +  +L      E+IA G +++ 
Sbjct: 370 KMDPPSVSDLIELKKAQFVKDVHTVISKEEDNQIFEETVGQLLTEGLSIEQIALGLMKLQ 429


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 208/389 (53%), Gaps = 19/389 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L + + L    
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLTLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241
           AT+ P I  LA  + ++  R+ +A   R  + I      VA   +D     +LR      
Sbjct: 186 ATMPPEIQKLADRFLQNPERLEVA--RRSSTAITVTQRFVAAHGKDYEKRAVLRELIRSQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  ++ +A+
Sbjct: 244 EDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + ++ + +
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIEK 363

Query: 362 EANVSVVW---------EPAPSVEAIRER 381
                V W         EP  S ++ R+R
Sbjct: 364 LIGQKVEWFNGDLSELPEPMESHDSRRDR 392


>gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 643

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/346 (38%), Positives = 193/346 (55%), Gaps = 8/346 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPDGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR
Sbjct: 311 VERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFV-ENRERR 355


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 204/370 (55%), Gaps = 12/370 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  + 
Sbjct: 10  LPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
             F   S    L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+ 
Sbjct: 68  SLFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P +R+ L+
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPSRRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  ++   Q++ + + I S +   S I+ +    +   +   +  +L  H  
Sbjct: 183 FSATWPEAIAAISGRVQQNPLTIEIDSVDALPS-IEQQFFETSSQGKIPLLQKLLSQHQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+         L       ++L G+L Q++R   L    +G ARV +ATDVA
Sbjct: 242 ASCVVFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L    
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360

Query: 364 NVSVVWEPAP 373
            + + W   P
Sbjct: 361 QLKLNWLTPP 370


>gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
 gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
          Length = 397

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 193/335 (57%), Gaps = 11/335 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  LT +QE  +   L  ++++  A TG+GKT AFG+ +        ++  P+
Sbjct: 29  KAVERMGFTELTEIQEKAIPVMLEGREIIAKAPTGTGKTCAFGVPIM-------EKIDPS 81

Query: 73  S-APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + A  A+ + PTREL  Q+  EL E  + +  V VA   GG  + R+   L+ GA IVV 
Sbjct: 82  ALAVQAVVLCPTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALKRGAQIVVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  + +N+S +   VLDEADEMLD+GF  D+  ILD  PK+R+M+MFSATIS
Sbjct: 142 TPGRMLDHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQMVMFSATIS 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHGAKNAIV 249
             +  +   YQ+D V + +         I ++ +L ++  +  A +  IL  +     ++
Sbjct: 202 REVMDIGWLYQRDTVELTVEPVKESQPKI-HQYMLESVGRQKLADLCYILEANDFHKVMI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+ S +  + +L E  F    L+G++ Q ER+  +   R G   V +ATDVAARGID
Sbjct: 261 FCNTKYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLVATDVAARGID 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           + D++ V + E+    E  LHR GRTGRA ++G+S
Sbjct: 321 VLDVDAVFNYEIPLENEYYLHRIGRTGRAKKEGVS 355


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/340 (38%), Positives = 192/340 (56%), Gaps = 8/340 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A  
Sbjct: 16  LPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLARLDAR- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +F       A+ + PTRELA QV +E+  L  A+  + V    GG  +  +   L++GA
Sbjct: 75  -KFDTQ----AMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+F
Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + ++   V +A E    S I  R   V   +R +A+  +L ++   
Sbjct: 190 SATYPEGIAKLSQQFLRNPKEVKLA-ERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+  LE VI+ +++ +PE   HR GRTGRA ++G ++
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWAL 348


>gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
 gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
          Length = 607

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/387 (35%), Positives = 205/387 (52%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   +   I +A+ E GY +   VQE ++ P L   + DV+  AQTG+GKT AFGL
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVI-PFLLGDDNDVIALAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            +   +            P AL + PTREL +Q+  +L   Y+K    + V    GG S+
Sbjct: 60  PILQKIDV------TTYHPQALVLCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L+ G H+VV TPGRL D +  K +++S +K V++DEADEML++GF D I  IL 
Sbjct: 113 ESQIKTLKRGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILA 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P+ R ML+FSAT+   I  + K Y K+   + I ++N  + +I     +V   D+  A
Sbjct: 173 EVPENRNMLLFSATMPKEIANITKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQARDKYLA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I  ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R   
Sbjct: 233 LKRIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKN 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+S+ +     + 
Sbjct: 293 IQLLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKG 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
           +   + R  N        P+  AI E+
Sbjct: 353 KIREIERIINKKFEKGEMPTGHAICEK 379


>gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
          Length = 457

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 132/367 (35%), Positives = 204/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHIDATLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGIQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     ++      + S + + +  +L  +   + +VFC+
Sbjct: 191 IAAISGRVQRDPLTIEIDSTDAL-PPVEQHFYETSSSGKISLLQRLLSVYQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +     +AL G+L Q++R   L    +G  R+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG+ G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQ-RANIISDMLQLKLNWQM 368

Query: 372 APSVEAI 378
            P+V  I
Sbjct: 369 PPAVTTI 375


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 203/347 (58%), Gaps = 10/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+ + G+   T +Q  IL   L  +D    AQTG+GKT AF +++ + +   
Sbjct: 60  DLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTHM--H 117

Query: 66  NDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDL 121
           N+  + A     P AL +APTREL +Q+G E + L     V +    GG+   +++ R  
Sbjct: 118 NNPITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDRLT 177

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           +    I+V TPGRL D  R + + +  ++ +V+DEAD MLD+GF  D+  I+ ++P+K  
Sbjct: 178 REPVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQKGN 237

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NI 238
           R+ L+FSAT++ AIT LA  + +D V+V I  E+     +D + V +  SDR  A++ NI
Sbjct: 238 RQTLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVD-QVVYIVTSDRKLALLYNI 296

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        +VFC+ + +VSR    L  +  +   L+G++ QQ+RS  L+  + G+ RV 
Sbjct: 297 IVQQNLSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGKIRVL 356

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDV ARGI + D++ V++ +L  +PE+ +HR GRTGRAG  G S+
Sbjct: 357 VATDVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSI 403


>gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 631

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  +     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLNNIDPD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 AELPNAELLGKR 382


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 194/344 (56%), Gaps = 8/344 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I +AL  +G   L+ +Q   L   L+ KDV+  AQTGSGKT+ F   + +    E
Sbjct: 10  DINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCF--VIPALQHVE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
            + F+      A+ + PTRELA QV ++        G + V    GG  +  + + L++ 
Sbjct: 68  VNDFTTQ----AIILCPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHS 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ DH+  + +++S++K  VLDEAD MLD+GF DD+  I   +PK+ + L+
Sbjct: 124 PHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  I  +AK Y  + V   + S++ + + I      V    R  A+  +L ++  
Sbjct: 184 FSATFTEQIERVAKQYLHNPVTCKVESQDSKPA-ITQLGYNVLPHTRTQALKAVLTHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAIVFC+ +  V+   + L E  F    L G+L Q +R++ L        +V +ATDVA
Sbjct: 243 KNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+ D+  VI+  +S  PE  +HR GRT RAG +GM+V ++
Sbjct: 303 ARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLV 346


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 19/358 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + ++ + 
Sbjct: 159 LPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMRQP 218

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +  + A  P A+ +APTRELA Q+  E   L   TG  V   +GG S+  +   L+ G
Sbjct: 219 PMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLRKG 278

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
             IV+ TPGRL D I      ++    VVLDEAD M+DLGF   +  +LD+ PK      
Sbjct: 279 CEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPKSTLKPD 338

Query: 180 ------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
                       R   MFSAT+ PA+  LAK Y +  V V I S  R   ++  R  +V 
Sbjct: 339 EEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDNVTQRVFVVK 398

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            +++   +   L     K  IVF +T+       + + E  +    L G  +Q +R   +
Sbjct: 399 ENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREAGI 458

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  RDG   V IATDVA RGID+PD+ LV++ ++ +N EN  HR GRTGRAGRKG++V
Sbjct: 459 KGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRAGRKGIAV 516


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 207/391 (52%), Gaps = 18/391 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ L   L       +P   
Sbjct: 34  LDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQKL-------NPTWF 86

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL I PTRELA QV  EL  L  A   + V    GG  +  +   L++GAHIVVGTP
Sbjct: 87  AVQALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEHGAHIVVGTP 146

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  + +N+S ++ +VLDEAD M+D+GF ++I  I+ + P +R+ L+FSAT    
Sbjct: 147 GRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQTLLFSATYPDD 206

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I   +  + +D V + + +   QH D  I+ R   V   DR+ A+  +L+++   + + F
Sbjct: 207 IRRASAEFLRDPVEIKVEA---QHDDSQIEQRFYAVDYDDRNAAVATLLKHYRPVSTLAF 263

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAARG+D+
Sbjct: 264 CNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLDI 323

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +    N  V W 
Sbjct: 324 QSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQNKPVQWF 383

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
               +E     D    L  P+    I G +K
Sbjct: 384 DLKDLEVAEGGD----LHAPMVTLCIMGGKK 410


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 197/347 (56%), Gaps = 8/347 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               LA  D     + P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CE--LANWDE----NKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + + +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAI 341


>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
 gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
          Length = 562

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 208/377 (55%), Gaps = 12/377 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I +A+ E GY + T +Q+  +   L + +D++  AQTG+GKT AF L +      
Sbjct: 8   NLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLPIL----- 62

Query: 65  ENDRFSPASAPLAL-AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
             D     S  + L  + PTREL +Q+ ++++    Y K     AV  GG S+  + R L
Sbjct: 63  --DMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVY-GGSSIVEQMRSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++   I+VGTPGR+ D I  K L+ S +  +VLDEADEML +GF+D++E IL  +P+ ++
Sbjct: 120 KDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT++  +  ++KNY     R+++ S N    +I +   +V    +  A+  ++  
Sbjct: 180 TFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDA 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  + +I+FC TR         L ++ +   AL G+LSQ +R   ++  R     + +AT
Sbjct: 240 NPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+ +++  
Sbjct: 300 DVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKS 359

Query: 362 EANVSVVWEPAPSVEAI 378
              + +     P+ + I
Sbjct: 360 ATKIEIHERTIPTGDDI 376


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L   LL       P 
Sbjct: 23  QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL +APTREL  Q+   LE     T V V    GG S++R+   L  GA I+V TP
Sbjct: 83  TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    + + H   +VLDEAD+MLD+GF   +  I    P KR+ L+FSAT+   
Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  Y ++ V+V +A   +    I          D+   + + L+ H  + A+VF  
Sbjct: 202 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPGEQALVFGR 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V +ATDVAARGID+P 
Sbjct: 262 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           +  V + ++ + PEN +HR GRT RAG +G +V FV P  M+  R  E+L ++
Sbjct: 322 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 374


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L   LL       P 
Sbjct: 15  QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL +APTREL  Q+   LE     T V V    GG S++R+   L  GA I+V TP
Sbjct: 75  TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    + + H   +VLDEAD+MLD+GF   +  I    P KR+ L+FSAT+   
Sbjct: 134 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  Y ++ V+V +A   +    I          D+   + + L+ H  + A+VF  
Sbjct: 194 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPGEQALVFGR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V +ATDVAARGID+P 
Sbjct: 254 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           +  V + ++ + PEN +HR GRT RAG +G +V FV P  M+  R  E+L ++
Sbjct: 314 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 366


>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
 gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
          Length = 498

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 205/378 (54%), Gaps = 18/378 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E GY   T +Q+  + P L  +DVL  AQTG+GKT AF L + + L     
Sbjct: 11  PKVL-KAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPMITLLGRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    +     T +  A+ IGG S   + + +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQDKLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH+    L ++ +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR------DNAIVNIL-- 239
           T++P I  +   +  +  +V +A     + +I    V+   S +        A++  L  
Sbjct: 187 TMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEKRALLRALIN 246

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  NAI+FC+ +A V    K L ++ +    + G+L Q  R+  L+  RD + R  
Sbjct: 247 AEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLESFRDNKLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G+++ +     ++  E 
Sbjct: 307 VASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICSGRDEKNLED 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +V  P P ++
Sbjct: 367 VER-----LVQNPIPRLD 379


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 218/397 (54%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +P 
Sbjct: 33  KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 85

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 86  SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+FSAT+  
Sbjct: 146 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 206 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 266 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R         
Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 371

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++++G ++  VD L
Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 404


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 507

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/342 (37%), Positives = 193/342 (56%), Gaps = 8/342 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EA+S  GY   + +Q   +   L    +L  AQTG+GKT AF L L S + A   
Sbjct: 13  PAVL-EAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDAS-- 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
                + P  L +APTRELA+QV        +K     V    GG   + + + L+ GA 
Sbjct: 70  ----VTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRRGAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P+  +  +FS
Sbjct: 126 VIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQRALFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +A+ Y ++A  V I SE R    I    + V    + +A+  IL       
Sbjct: 186 ATMPPQIKKVAQTYLRNATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVEPIDA 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+A  +   + L+     V  LSG+L+Q++R   ++ ++ G+  + IATDVAAR
Sbjct: 246 AIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  +  VI+ ++  + E  +HR GRTGRAGR+G ++ ++
Sbjct: 306 GLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLV 347


>gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 418

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 191/341 (56%), Gaps = 5/341 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           I + I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF + +   L A  
Sbjct: 8   IIEPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQLLNAVK 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N++     +   L I PTRELA+Q+G   +     TG+   V  GGV+ + +   LQ G
Sbjct: 68  TNEKKRKIRS---LIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQKG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL D +    L++ +++  VLDEAD MLD+GF  DI  IL   PKK++ L 
Sbjct: 125 IDILIATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLF 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P IT LA +   + V V++   +     I+ +   V   +++N +V++L+    
Sbjct: 185 FSATMPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLLKNQDI 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VF  T+    +  K L +H     A+ G  +Q  R  AL   ++   RV +ATD+A
Sbjct: 245 KTALVFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRVLVATDIA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ +LE VI+ ++S+  E  +HR GRTGRAG KG ++
Sbjct: 305 ARGIDVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAI 345


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 210/398 (52%), Gaps = 37/398 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------ 67
           AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +      
Sbjct: 44  ALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRM 103

Query: 68  ----------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCI 109
                     R  PA A P  L + PTRELA+QV       GR L        +V A  +
Sbjct: 104 DGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCASIL 157

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DDI
Sbjct: 158 GGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDI 217

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-AL 228
           E I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      +
Sbjct: 218 EAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFTDDM 277

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L 
Sbjct: 278 SHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTLT 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++
Sbjct: 338 ALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLV 397

Query: 349 PQN---MQRRAERLF-REANVSVV--WEPAPSVEAIRE 380
                   RR ER   R  N +VV   EP  + +  RE
Sbjct: 398 NHGDTFQWRRIERFVDRRINATVVEGLEPKRAPKPRRE 435


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 195/345 (56%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+  GY   T++Q+ ++ P L  K+++  A TGSGKT AF + +   +  E +   
Sbjct: 14  ILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEEN--- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + P RELAVQV +E+  +  K  + V    GG  + ++ R L+  +HIV G
Sbjct: 71  ---APQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSHIVAG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL   P   R+ +FSAT+ 
Sbjct: 128 TPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEMKQILSLVPADCRISLFSATLK 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA  +  +AV V   +   Q   I  +    +   + +  ++IL     ++ ++F
Sbjct: 188 PEIRELADEFIPEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMDENPQSCMIF 247

Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           C TR   +  F K+  + +F    L G++ Q+ER   +   R G  R  IATDVAARGID
Sbjct: 248 CGTREMTNVLFQKLRRKRIF-CGMLHGDMEQKERLKTVNAFRRGGFRFLIATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             ++  V++ +  +  E  +HR GRTGR G  G +V ++ ++ QR
Sbjct: 307 FEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQR 351


>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 609

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 276/555 (49%), Gaps = 54/555 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + I +AL++ GY   T +QE  +   +  + D+   AQTG+GKT AF L +   LL  
Sbjct: 9   LKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLPILE-LLDS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N     +    A+ ++PTRELAVQ+G  + ++      V V    GG S+  + R L+ G
Sbjct: 68  N-----SGNVQAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMEDQIRSLKRG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           + IVVGTPGR  D I+ + L + ++K +VLDEADEML++GF+D+++ +L+++P  ++ L+
Sbjct: 123 SQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEATPDTKQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + ++AKNY    V +    +N+    + +    V    R  A+  I   +  
Sbjct: 183 FSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALKRIADLNPD 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC TR         L +  +   AL G+LSQ +R + +   R    ++ +ATDVA
Sbjct: 243 IYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAE 357
           ARG+D+ +L  VI+ +L    EN  HRSGRTGRAG  G+S+ ++        + +++  +
Sbjct: 303 ARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKLRPIEKIIQ 362

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKH 411
           + F EA V       PS + I +     ++   +   +I+ +E ++ D L      L   
Sbjct: 363 KKFTEAKV-------PSGKDICQNQLMSLIDKVV---NIEVNETQINDFLPSIYEKLEGL 412

Query: 412 DPEKIAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           D E++   F+ +     L   E    ++ +S     +D+SRA       R   +  + F 
Sbjct: 413 DREQLIQKFVSLEFNTMLAYYENAKDLNDLSS----KDNSRA-------RTENENMTRFF 461

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +++G K       L+ ++   +  ++  IG+I +    +F E+  +  D           
Sbjct: 462 INIGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKT--------- 512

Query: 531 IQLKYLGGEKPDFRG 545
             L+     +PDF G
Sbjct: 513 --LEAFSSNQPDFDG 525


>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
 gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
          Length = 644

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 138/379 (36%), Positives = 212/379 (55%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T+
Sbjct: 12  ETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETV 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   DR    + P  L I+PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFAKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA    KD +R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +    +  + RA  
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 370

Query: 359 LFREANVSVV----WEPAP 373
            + EA +SV      EP+P
Sbjct: 371 EYLEARLSVSEIEGLEPSP 389


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L+++ LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        ++ + + ++       + I+FC T
Sbjct: 192 EKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    K L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 193/345 (55%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L  E 
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLL--EK 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA 
Sbjct: 67  GR-ARARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT+ P I  LA  + ++  R+ +A        +  R V     D +   V   ++R  G 
Sbjct: 186 ATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLRELVRAQGE 245

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+DV
Sbjct: 246 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 306 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 198/355 (55%), Gaps = 10/355 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   + Q   ++L    +++ T +Q   +   L   D+L  AQTGSGKT AFG+ L
Sbjct: 1   MTTFEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+  ++D+        +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  VDTV-RKSDQLQ------SLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  + + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K++ KD   +   S+     DI   A +   +++   ++  
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEYATIARENEKLETLIGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G+++ F+ P  M
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEM 348


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 193/343 (56%), Gaps = 9/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q A +   L++KDVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 19  KAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS   + R L+ GA I++ TP
Sbjct: 76  RIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQDRKLERGADILIATP 135

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH  RGK L +  ++ +V+DEAD MLD+GF  +IE I   +P  R+ L FSAT++P
Sbjct: 136 GRLLDHFERGKLLLVG-VEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGA---KNA 247
            IT L K +    + V I         I  R V       D  AI+  L +      KNA
Sbjct: 195 EITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILRELIHKEGDELKNA 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  +S   + L +H F V AL G++ Q  R+N L   +D +  + +A+DVAARG
Sbjct: 255 IIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNKLTLLVASDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +
Sbjct: 315 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTK 357


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 4/340 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71
            ++E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   L+A+N   +   
Sbjct: 15  TITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILHLLMAKNVEQKAER 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELAVQV +        T + + +  GGVS+  +    + G  +++ T
Sbjct: 75  VKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKTGIDVLIAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   LN++ L  +V DEAD MLD+GF D+I  +L   PK R+ L+FSAT+  
Sbjct: 135 PGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVPKDRQTLLFSATLDD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
           AI  L+K+  ++   + +   N   + ++ R   +  SDR    V +++R +     ++F
Sbjct: 195 AIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAID-SDRKTEFVSHLIRSNHWHQVLIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V R  + L +      A  G+LSQ  R   LQ  + G  +V +ATDVAARG+D+
Sbjct: 254 SRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVATDVAARGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 314 VELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 353


>gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 477

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 197/344 (57%), Gaps = 2/344 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           +++++ GY N T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   N   SP
Sbjct: 30  KSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASP 89

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++  L+ G  ++V 
Sbjct: 90  ARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVA 149

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S
Sbjct: 150 TPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFS 209

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++Y    V + +A+ N     +   A  +    +  A+V++++  G K  IVF
Sbjct: 210 NEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVF 269

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVAARG+D+
Sbjct: 270 SNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDV 329

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R
Sbjct: 330 AGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEER 373


>gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
 gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
          Length = 626

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 200/370 (54%), Gaps = 7/370 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E       
Sbjct: 19  EALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE------L 72

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVVGT
Sbjct: 73  KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+  
Sbjct: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+F 
Sbjct: 193 AIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+ 
Sbjct: 253 RTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVE 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++    
Sbjct: 313 RISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372

Query: 372 APSVEAIRER 381
            P+ E + +R
Sbjct: 373 LPNAELLGKR 382


>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 517

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 139/424 (32%), Positives = 229/424 (54%), Gaps = 14/424 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + I +A+   G+ ++T +QE I+   + + DV+  +QTG+GKTVAFG+ L   L  +
Sbjct: 8   DINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPLIQNLDFD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        ++ + PTRELA+QV  E+  L            GG  + R+ + L++  
Sbjct: 68  EEKIQ------SVIMTPTRELAIQVTAEINRLLRFLPTKAVALYGGEEITRQIKRLKDRP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DHIR + +   ++  VVLDEADEML +GF +DIE IL+  P +   ++F
Sbjct: 122 AIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILEQMPNRSITMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +++ + KD + V +  +      ID + + +  SD+ +A+  +L  +   
Sbjct: 182 SATMPDRIKKISEKFLKDPLFVKVERKTLTVDSIDQKYIQIQESDKFDALCRLLDIYQPP 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V      L    ++V  + G++ Q  R   L+  + G  R+ +ATDVAA
Sbjct: 242 LCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-RLFREA 363
           RG+D+  +  VI+ +L    E  +HR GRTGRAG+ G+S  FV P+ M+   E     ++
Sbjct: 302 RGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKEMEFLQEIEHHTKS 361

Query: 364 NVSVVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAG 419
            +     P  S   EAI  R   +I+ D + LD+ + +EK  K+   LL ++D   I + 
Sbjct: 362 KMEKFKNPTVSQAKEAIYLRATDKIV-DLMDLDN-EKEEKLEKIAQSLLERYDAVDIISA 419

Query: 420 FLRI 423
            LR+
Sbjct: 420 ALRV 423


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 4/340 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71
            ++E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   L+A+N   +   
Sbjct: 15  TITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILHLLMAKNVEQKAER 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELAVQV +        T + + +  GGVS+  +    + G  +++ T
Sbjct: 75  VKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQVDVFKTGIDVLIAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   LN++ L  +V DEAD MLD+GF D+I  +L   PK R+ L+FSAT+  
Sbjct: 135 PGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVPKDRQTLLFSATLDD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
           AI  L+K+  ++   + +   N   + ++ R   +  SDR    V +++R +     ++F
Sbjct: 195 AIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAID-SDRKTEFVSHLIRSNYWHQVLIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V R  + L +      A  G+LSQ  R   LQ  + G  +V +ATDVAARG+D+
Sbjct: 254 SRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVLVATDVAARGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q
Sbjct: 314 VELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQ 353


>gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 457

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 10/372 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   +  +L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEINTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAIRERDAQ 384
           P+   I    A+
Sbjct: 370 PTGNTIAPLTAE 381


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 206/376 (54%), Gaps = 16/376 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  A+++ G+   +++Q   +   L  +D+   AQTG+GKT AFGL L +++ A 
Sbjct: 55  GLPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLASVEAH 114

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQ 122
                  + P   AL + PTRELA+QV   +E   +    V V    GG     ++R L+
Sbjct: 115 R-----GTRPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALR 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G H+VVGTPGR+ DH+   GL +   + +VLDEADEML +GF +D+E I   +P +R++
Sbjct: 170 DGVHVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQV 229

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+ PAI  +A  +  D V + +A ++   + +     +V    +  A+  IL   
Sbjct: 230 ALFSATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATS 289

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A  +IVF  TR++       L E       +SG+++Q+ER   ++ +R G   V +ATD
Sbjct: 290 DADASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATD 349

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           VAARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V FV P     R +  F 
Sbjct: 350 VAARGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHE---RGKLKFI 406

Query: 362 EANVSVVWE----PAP 373
           E  + V  E    P+P
Sbjct: 407 ENTIKVSLEEIDIPSP 422


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 192/349 (55%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +Q   + P L  +D+L  AQTG+GKT +F L + S L     
Sbjct: 11  PKVL-KAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPMLSLLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQDKLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+   FSA
Sbjct: 127 LICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---DNAIVNILRY--- 241
           T++P I  +   + ++ VR+ +A +      I+   V+   S R   D+   +ILR    
Sbjct: 187 TMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEKRDILRAIID 246

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  NAIVFC+ +  V   +K L +H +    + G+L Q +R+  L   R G  ++ 
Sbjct: 247 AEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDGFRAGDLKIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +
Sbjct: 307 VASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMI 355


>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 422

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 185/344 (53%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   ++R        AL + PTRELA+Q+G   E     TG+   V  GGV    +  DL
Sbjct: 63  LYKTDNR----KGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D +    +N+  L   VLDEAD MLD+GF  DI  IL   P +R+
Sbjct: 119 KRGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   I TLA +   +  +V +   +     I      V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLLKN 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ +VF  T+    +  ++L++      A+ G  SQ  R  AL   +    RV IAT
Sbjct: 239 TAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G ++
Sbjct: 299 DIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTAL 342


>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
 gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
          Length = 641

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 214/380 (56%), Gaps = 12/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
            + Q I   L++RG  +L  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +   
Sbjct: 27  GVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRS 86

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P AL +APTRELA QV  E E++ +   +      GGVS+  ++R L  
Sbjct: 87  RSKSQRRSFRGPAALVLAPTRELAKQV--ETEFMESGKELATVCVYGGVSIMSQKRLLSR 144

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  + VGTPGR+ D +    L++S ++ +VLDEAD+ML +GF +D+E I++  P+KR+ +
Sbjct: 145 GVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNM 204

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+   +  L++ +    + +++  E+ +     I   AV  + + +   + +++  
Sbjct: 205 LFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITV 264

Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +G     IVF  T+      +  +   L    AL G+++Q +R   L   R+GR  + +A
Sbjct: 265 YGKGGKTIVFTQTKRDAEEVSMAMNRTL-GCEALHGDIAQFQREKTLAAFREGRFLILVA 323

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVAARG+D+ D++L+IH +L  + E  +HRSGRTGRAG+ G + VF  PQ  +RR  + 
Sbjct: 324 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQ--ERRILKH 381

Query: 360 F-REANVSVVWEPAPSVEAI 378
           F R+   S  ++  P  + +
Sbjct: 382 FERQVGCSFQFKSMPHFDEV 401


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 144/385 (37%), Positives = 203/385 (52%), Gaps = 37/385 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------ 67
           AL E  Y   T VQ   +   L   D+LV++QTGSGKT AF L     +  + +      
Sbjct: 44  ALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQRPRA 103

Query: 68  ------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                       R SPA  P  L + PTRELA+QV       GR L        +V A  
Sbjct: 104 DGPPQRVKGRRPRPSPAK-PSLLVLTPTRELALQVTTAASQYGRHLRR------IVCASI 156

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A 227
           IE I+ ++P  R+MLMFSAT+   I  LA+   +D  R+ IA+     S+I+ R      
Sbjct: 217 IEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFTDD 276

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           LS +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 277 LSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTL 336

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 337 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396

Query: 348 IPQN---MQRRAERLF-REANVSVV 368
           +        RR ER   R  + +VV
Sbjct: 397 VNHGDTFQWRRIERFVDRRIDATVV 421


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 196/350 (56%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +AL +  +   T VQ   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 9   LPLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPLIAKLLGE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
                 +A  AL I PTRELA QV  E+  L  K  V+ +A+ IGG  + R+   LQ   
Sbjct: 68  -----PNASTALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQLNQLQRRP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L  +++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 123 RIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLPKMRQNLMF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     RV++ +E      I    +  + S++   +V  L Y    
Sbjct: 183 SATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEIIYASESEKYGKLVTQL-YQRKG 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVF  T+    +    L +     +A+ G+L Q++R   +   R G  ++ +ATDVA+
Sbjct: 242 SIIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQIMVATDVAS 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           RG+D+P ++ VI+ +   +  N +HR+GRT RAG +G ++ F+  Q+ +R
Sbjct: 302 RGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKR 351


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 189/344 (54%), Gaps = 7/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L  +G     ++QE  L+  L+  D++  A+TGSGKT+AFG+ +    ++  DR  
Sbjct: 5   ICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPKDRDY 64

Query: 71  ---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P AL +APTRELA+QV  E+  +    G+ V    GG     +   L+ G  I
Sbjct: 65  IDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEKGVDI 124

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D    K L++SH+ A+VLDEADEMLDLGF  D+E ++  +P+ R+ L+FSA
Sbjct: 125 VVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTLLFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGA 244
           T+  AI  LA++Y +  + +   S   + + +   A  V  +   D+   I  +L+    
Sbjct: 185 TMPGAIVALARSYMRHPMNIRAESAAERET-VPATAQFVYQAHDLDKPEMIGRLLQCEDH 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    R    LAE  F    L G++ Q  R   +Q  RDG+  V +ATDVA
Sbjct: 244 DKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  V++     + +  +HR GRTGRAG  G++V ++
Sbjct: 304 ARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLV 347


>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
 gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
          Length = 636

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 206/372 (55%), Gaps = 12/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 22  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 74

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  +VVG
Sbjct: 75  VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+ 
Sbjct: 135 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+   L       AI+F
Sbjct: 195 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 254 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVVW 369
             + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++  
Sbjct: 314 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIPE 372

Query: 370 EPAPSVEAIRER 381
              P+ E + ER
Sbjct: 373 VELPNAELLGER 384


>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
          Length = 437

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 203/369 (55%), Gaps = 12/369 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL 
Sbjct: 56  VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLRRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           ++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+ 
Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 352

Query: 376 EAIRERDAQ 384
            +I   +A+
Sbjct: 353 SSIVTLEAE 361


>gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 482

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 189/360 (52%), Gaps = 17/360 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N   +
Sbjct: 12  ILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGNK--A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA    AL + PTRELA QVG  +E       +  AV  GGV +  +   L  G  I+V 
Sbjct: 70  PAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKLSRGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +N S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    + + +V +++ H  +  +VF
Sbjct: 190 DDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKASVLVKLIKQHDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355
             L  V++ +L + PE+ +HR GRTGRAG  G +V                +I QN++RR
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIELLIKQNLERR 369


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 193/344 (56%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L   G+   T +Q+  +   L  KDVL  AQTG+GKT AFG+ L        ++ +
Sbjct: 13  MAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLI-------EKVA 65

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L +APTRELA+QV   L+       + V    GG+ + R+ + L+ G  IVVG
Sbjct: 66  DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATI 189
           TPGR+ DH+  + L  + +  ++LDEADEM+++GF DD++FI+D  P ++R+ ++FSAT+
Sbjct: 126 TPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI TL + + K  V V   +       I+    +V   ++ +   + L  H  + AIV
Sbjct: 186 PKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG+KG+++ FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEM 349


>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 416

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 197/360 (54%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + ++L+ +G+     VQ A L   L  +D+L   QTGSGKT+AFGLAL + +  +
Sbjct: 10  GLPEALVKSLAAQGFTAPFPVQAATLPDTLAGRDLLGRGQTGSGKTLAFGLALLARIAGD 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   ++APL L + PTRELA QV   L  L A   + V   +GG+S++++  +L+ G 
Sbjct: 70  RAR---STAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQVAELRRGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH++    ++S +    LDEAD M D+GF   +  ILD +P   + L+F
Sbjct: 127 DLLVATPGRLTDHLQQGTCDLSEVTITALDEADRMADMGFLPQVRGILDRTPSDGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + +  D V  ++A        +++  ++V   DR   I  I    G  
Sbjct: 187 SATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEHHVLVVGKDDRSRVIAEIAAREG-- 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  +VL         L G  SQ +R+ AL   R G   V IATDVAA
Sbjct: 245 RTIMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFRTGEVPVLIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  ++P+  LHR+GRT RAG +G+ V +     +   + L ++A V
Sbjct: 305 RGIHIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDLLTKQAGV 364


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +PK +++ 
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+ +   F DSI       G E  +++V+    +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   + A            AL + PTRELA QV +EL  L  +     ++ +C GG  V 
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  
Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLGAINTLVLDEADRMLEMGFREDIDTIISH 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232
           SP+ R+ L+FSAT   AI  ++++ Q+D + +    E    SD   I+         ++ 
Sbjct: 174 SPQARQTLLFSATWPQAIAQISQSIQRDPLTI----ETGDVSDLPAIEQTFYEAGAREKL 229

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A++ +L      + +VFC+T+         L +       L G+L Q+ER   L    +
Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G  RV +ATDVAARG+D+  L LV++ +LS +PE  +HR GRT RAG++G +V FV P  
Sbjct: 290 GSCRVLVATDVAARGLDIKALALVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER 381
           M  RA  L       +VW    +++A+  R
Sbjct: 350 M-IRAHALEDYLQQKLVWCNLSALKAVAAR 378


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/337 (37%), Positives = 190/337 (56%), Gaps = 6/337 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N   +I  A+ E GYV  T +Q   + P +  KDV+  AQTG+GKT AF L +   L+  
Sbjct: 7   NFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPILQRLME- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL IAPTRELA Q+   +  L  +T +  A   GGV+++ + + L+NG 
Sbjct: 66  ----GPRGRVRALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKLRNGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DH+  + +++SHL+ +VLDEAD+M D+GF  DI  IL   PKKR+ L+F
Sbjct: 122 EIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA     + V V + S       +++    V+   +   ++ +LR+   +
Sbjct: 182 SATMPPDIKRLAGEILHNPVTVQVGS-TAPPVTVNHAIYPVSQHLKTPLLLELLRHTDKQ 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AA
Sbjct: 241 SVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RGID+  +  V++ +++   E  +HR GRTGRA R G
Sbjct: 301 RGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSG 337


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 188/339 (55%), Gaps = 2/339 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +   + T +Q   +   L  +DVL  AQTG+GKT AFGL L   L+    + +P + 
Sbjct: 12  LAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMKAGTKPAPRTC 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APTREL  Q+   L      + + + V +GGV++  + +  + GA ++V TPGR
Sbjct: 72  -RGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGADLIVATPGR 130

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K L +S  + +VLDEAD+MLDLGF   +  I    P +R+ ++FSAT+   + 
Sbjct: 131 LIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFSATMPKQME 190

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ Y  D  RV +A   +    I      V    +   ++++L  H  + A+VF  T+
Sbjct: 191 ELSRAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLLGNHRDELALVFSRTK 250

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R  + L+   F+  A+ G  SQ +R  AL+  R+G  +V +ATDVAARGID+PD+ 
Sbjct: 251 HGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATDVAARGIDIPDVR 310

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            V + +L + PEN +HR GRT RAGR G +V F  P+ M
Sbjct: 311 FVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEM 349


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 162/521 (31%), Positives = 269/521 (51%), Gaps = 34/521 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + +    L++ D
Sbjct: 22  PSVL-RAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI----LSKID 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             S A+   AL +APTRELA+QV        A    +  + I GG S   +   L+ GAH
Sbjct: 77  VTSTATQ--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQLAGLRRGAH 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FS
Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     + 
Sbjct: 195 ATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAAR
Sbjct: 255 MIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANV 365
           G+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  +R   +   +A  
Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372

Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE-- 414
             + E A P+VE +   +AQR+ +   F DSI            +K+V     +HD    
Sbjct: 373 QTLTETALPTVEDV---NAQRVAK---FADSITTALGAPGIDLFRKLVQDYEREHDTPMA 426

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA      R G    EE   ++     +R    +         R   +  + + ++VG
Sbjct: 427 DIAAALALQSRDG----EEFL-MAPEPPPERRERRTERRDRPEKPRST-RPFATYRIAVG 480

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            + K     ++  +    G++R   G I + PD + VE+ A
Sbjct: 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 201/360 (55%), Gaps = 17/360 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLV--SAQTGSGKTVAFGLALASTLLAENDRFS 70
           EA+  +G+   T +Q  ++ P L E DV +   +QTG+GKT AF L +   +        
Sbjct: 14  EAVKRKGFETPTDIQREVI-PRLLEGDVDIIGQSQTGTGKTAAFALPIIEAI-------D 65

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P    + A+ + PTRELA+QV  E++ L  K  V V    GG  +  + R L+ G H+VV
Sbjct: 66  PKEKTVQAIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIRALERGVHVVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S ++  VLDEAD MLD+GF DDIE I+  +P+++R+LMFSAT+
Sbjct: 126 GTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEEKRILMFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNA 247
              I  LAK Y ++   V ++ +      +D   V V  + +   +  +L   ++G    
Sbjct: 186 PMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARKYEKLKEVLEEGFYG---- 241

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+      ++ L    F+  AL+G++SQ  R       ++G+  V +ATDVAARG
Sbjct: 242 IIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVLVATDVAARG 301

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ ++  VI+  L  NPE  +HR GRTGR G++G ++  +      R   + R+A V V
Sbjct: 302 LDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRGIARKARVEV 361


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     + + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 183/335 (54%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL ++GY   T +QE  +   L+  D+L  AQTG+GKT AFG+ + + LL EN+   
Sbjct: 12  ILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPILNHLLKENNSGQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+          T +   V  GGV   ++   LQ G  I+V 
Sbjct: 72  GKRKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVASLQQGVDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    +    LK VVLDEAD+MLD+GF  D++ I+   P  R+ L FSAT+ 
Sbjct: 132 TPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPPNRQSLFFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++    D  RV I  E      +      V+ +++ N ++++L      + +VF
Sbjct: 192 KTIVELSQKMLGDFERVTIKPEQATAEKVKQGVYFVSKNNKPNLLIHLLDQRPQDSVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K L +   +  A+ G  SQ +R  AL   +DG  +V IATD+AARGID+
Sbjct: 252 SRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLKVLIATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DL LVI+ +L +  E  +HR GRTGRA   G+++
Sbjct: 312 DDLALVINYDLPNVSETYVHRIGRTGRASASGIAL 346


>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
 gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
          Length = 659

 Score =  214 bits (544), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 33  ILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 87

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 88  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 147 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 207 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 266 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 326 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 385

Query: 369 WEPAPSVEAIRER 381
               P+ E + +R
Sbjct: 386 EVELPNAELLGKR 398


>gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
 gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/366 (36%), Positives = 204/366 (55%), Gaps = 10/366 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   +  +L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAI 378
           P+   I
Sbjct: 370 PTGNTI 375


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 201/365 (55%), Gaps = 14/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L        D+ +    
Sbjct: 16  LNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLL-------DKIAVGEF 68

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV +EL  L  + +   ++ +C GG  +  +   L +  HIVVGT
Sbjct: 69  VTQALILCPTRELADQVSKELRRLARFTQNIKILTLC-GGQPMGHQLDSLVHAPHIVVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+FSAT   
Sbjct: 128 PGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQRQTLLFSATYPA 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++   Q++ + V +  +  +   I+          R   ++++L ++   + +VFC
Sbjct: 188 GIERISARVQREPLNVEV-DDGDEEPAIEQVLFETTREKRLPLLISVLSHYQPDSCVVFC 246

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ 
Sbjct: 247 NTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLVATDVAARGLDIK 306

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
           DL LV++ EL+ +PE  +HR GRTGRAG  G++V    PQ M  RA  +     + + W 
Sbjct: 307 DLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMT-RAHAIEDYLQIKLKWT 365

Query: 371 PAPSV 375
            A  +
Sbjct: 366 SAEQI 370


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     + + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y    + + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 457

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 202/372 (54%), Gaps = 10/372 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGK  AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA  +     + + W+  
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEEAQRANIISDMLQIKLNWQTP 369

Query: 373 PSVEAIRERDAQ 384
           P+  +I   +A+
Sbjct: 370 PANSSIVTLEAE 381


>gi|320451062|ref|YP_004203158.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
 gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
          Length = 521

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/330 (38%), Positives = 184/330 (55%), Gaps = 12/330 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P    I EAL  RG    T +Q A L   L  KD++  A+TG+GKT+AF L +A  
Sbjct: 3   FKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQG 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A  +R      P AL + PTRELA+QV  EL+ +     VV     GG    +++ +L
Sbjct: 63  LEASKER---GRLPRALVLTPTRELALQVSGELQAVAPHLKVV--TVYGGTGYGKQKEEL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VV TPGR  D++R   L++S ++  VLDEADEML +GF +++E IL ++PK+R+
Sbjct: 118 TRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLSMGFEEEVEAILSATPKERQ 177

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240
            L+FSAT+      LA+ Y K  V +N+  E      I Y+   + A  DR + + ++L 
Sbjct: 178 TLLFSATLPSWARKLAERYMKSPVVINVVREE----GITYQEEAIPAPGDRLSLLSDVLF 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K AIVF  T+A        L        A+ G+LSQ +R   ++  R+G  RV +A
Sbjct: 234 VKAPKRAIVFTRTKAETEEVATGLLRLGHPARAIHGDLSQTDRERVMRAFREGEVRVLVA 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330
           TDVAARG+D+P+++LV+H      PE   H
Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPDKPETYQH 323


>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 465

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 217/399 (54%), Gaps = 33/399 (8%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAE 65
           +I +AL++  Y   T VQE  +   +  KD+LVS+QTGSGKT AF L      AS    +
Sbjct: 11  LIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPALHRFASVPFEK 70

Query: 66  ND------------------RFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVV 105
           +D                  R+ PA  P  L + PTRELA+Q+ +  E    Y K    V
Sbjct: 71  SDKKTFNQKRQAARAKGEKVRYEPAH-PKMLVLTPTRELAMQIVQSSEDYSAYLKHFRTV 129

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           A+ +GG+   ++ + L     I+V TPGRL DH+    +    L+ +VLDEAD MLD+GF
Sbjct: 130 AI-LGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLDEADRMLDMGF 188

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P+ R+ ++FSAT+   +  +A+   +D   ++I S   +H +ID     
Sbjct: 189 IDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASRHENIDQMIHF 248

Query: 226 VA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V  L  ++  + ++L       A+VF +T+         LA   F   AL G++ Q  R+
Sbjct: 249 VDDLPHKNRLLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAAALHGDMPQGARN 308

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L  +R G+ ++ +ATDVAARGID+P++  V++ +L   PE+ +HR GRTGRAGR G++
Sbjct: 309 RTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRIGRTGRAGRHGLA 368

Query: 345 VFVIPQNMQ---RRAERLFREA---NVSVVWEPAPSVEA 377
           + ++  N     R+ ER  +++   NV   +EP  S +A
Sbjct: 369 ISLVNHNDNNNVRKIERFTKQSIPVNVIEGFEPKLSFKA 407


>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 459

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 197/358 (55%), Gaps = 12/358 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+  +T +Q   L   L  +DV+  A+TGSGKT AFGLAL   L  +  R      
Sbjct: 18  LQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALLHNLDVKRFRVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV  E+  L  A   + V    GG  +  +   L++GAHI+VGTPG
Sbjct: 74  --ALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQIGSLEHGAHIIVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+  + L++S +  +VLDEAD MLD+GF D+++ ++ S P +R+ L+FSAT   +I
Sbjct: 132 RIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPAQRQTLLFSATYPESI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFC 251
             ++   QKD + V + S    H     + V   + D  R  A   +L ++  ++AIVFC
Sbjct: 192 AAISGQVQKDPLEVTVES---THDTDSIQQVFFEVDDAHRTKATAALLSHYQPESAIVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +       L      V+AL G+L Q+ER+  L    +    V +ATDVA+RG+D+ 
Sbjct: 249 NTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVLVATDVASRGLDIK 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           ++  VI   ++ +PE  +HR GRTGRA  KG+++ ++  +   RA  +       + W
Sbjct: 309 EVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANAIEDYQKAKLKW 366


>gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
           helicas dead) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
          Length = 635

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 165/550 (30%), Positives = 266/550 (48%), Gaps = 32/550 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE        
Sbjct: 26  ALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE------LK 79

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV     ++      V V    GG     + R L+ G  IVVGTP
Sbjct: 80  APQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGPQIVVGTP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +FSAT+  A
Sbjct: 140 GRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEA 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + +  D   V I +      DI      V    ++ A+V  L       AI+F  
Sbjct: 200 IRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVR 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 260 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 320 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 379

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLRIHRA 426
           P+ E + +R  ++   +      ++  +      LL+K  P      E +AA  L++ + 
Sbjct: 380 PNAELLSQRRLEKFAAN--VQQQLESSDLDQYRALLSKLQPAEDLDIETLAAALLKMAQG 437

Query: 427 GLCAPEEITPVSLVSGRDRF--RDDSR--AFKVGGGSRDNFKGS-------SWFSLSVGS 475
               P  + P  +   R  F  RDD R   F   G   D  +           + + VG 
Sbjct: 438 E--RPLILPPDPVRRPRREFNERDDRRRNGFDDRGERGDRPRRERRDVGEMELYRIEVGR 495

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531
               E R ++  +     I+ + IG I++    + +E+      D +    RT  L+K +
Sbjct: 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILNKPM 555

Query: 532 QLKYLGGEKP 541
            ++ +G  +P
Sbjct: 556 NMQLMGDAQP 565


>gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 643

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 203/373 (54%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNIDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGAKNAI 248
             AI  + + + K+   V I S      DI  ++   A   R N A+V  L       AI
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDIS-QSYWTAYGMRKNEALVRFLEAEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+
Sbjct: 250 IFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++ 
Sbjct: 310 DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRER 381
               P+ E + +R
Sbjct: 370 EVELPNAELLGKR 382


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 213/379 (56%), Gaps = 12/379 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             +L + PTRELA QV +E+  L A+T   + V    GG+    +   L++GAHI+VGTP
Sbjct: 75  --SLVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R   LN+  L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+FSAT  P 
Sbjct: 132 GRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSATYPPQ 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I ++A       V   + S + + +   +   +     R  A+  +L  H  ++ +VFC+
Sbjct: 192 IKSVADRIMHKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+      +  L ++ F  +AL G+L Q+ER  AL +  +    V +ATDVAARG+D+  
Sbjct: 252 TKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVATDVAARGLDIDS 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ VI+  L+ + E  +HR GRTGRAG KG++  +I      +   L    + ++  EP 
Sbjct: 312 LDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLEDYLDRAISGEPL 371

Query: 373 PSVEAIRE---RDAQRILQ 388
           PS++ + +   R A   LQ
Sbjct: 372 PSMDLLDQPTFRPAMTTLQ 390


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTMIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +  E  P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEIEEYIGFEIPKELTP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 477

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 195/342 (57%), Gaps = 2/342 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPAS 73
           +++ GY N T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   N   SPA 
Sbjct: 32  IADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPAR 91

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++  L+ G  ++V TP
Sbjct: 92  HPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+FSAT S  
Sbjct: 152 GRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNE 211

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L ++Y    V + +A+ N     +   A  +    +  A+V++++  G K  IVF +
Sbjct: 212 IRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSN 271

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVAARG+D+  
Sbjct: 272 TKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAG 331

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R
Sbjct: 332 VPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEER 373


>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
 gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
          Length = 640

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 214/380 (56%), Gaps = 12/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
            + Q I   L++RG  +L  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +   
Sbjct: 9   GVSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRS 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P AL +APTRELA QV  E E++ +   +      GGVS+  ++R L  
Sbjct: 69  RSKSQRRSFRGPAALVLAPTRELAKQV--ETEFMESGKELATVCVYGGVSIMSQKRLLSR 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  + VGTPGR+ D +    L++S ++ +VLDEAD+ML +GF +D+E I++  P+KR+ +
Sbjct: 127 GVDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNM 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+   +  L++ +    + +++  E+ +     I   AV  + + +   + +++  
Sbjct: 187 LFSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITV 246

Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +G     IVF  T+      +  +   L    AL G+++Q +R   L   R+GR  + +A
Sbjct: 247 YGKGGKTIVFTQTKRDAEEVSMAMNRTL-GCEALHGDIAQFQREKTLAAFREGRFLILVA 305

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVAARG+D+ D++L+IH +L  + E  +HRSGRTGRAG+ G + VF  PQ  +RR  + 
Sbjct: 306 TDVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQ--ERRILKH 363

Query: 360 F-REANVSVVWEPAPSVEAI 378
           F R+   S  ++  P  + +
Sbjct: 364 FERQVGCSFQFKSMPHFDEV 383


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P+ R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    ++ ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSVHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 526

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 152/513 (29%), Positives = 250/513 (48%), Gaps = 50/513 (9%)

Query: 15  LSERGYVNLTSVQ----EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           L E+G+   + +Q      +LN D   KDV+  AQTG+GKT AF L +        ++  
Sbjct: 20  LLEKGFEKPSPIQALTIPVLLNGD---KDVIGQAQTGTGKTAAFSLPIL-------EKIE 69

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            ++  + A+ +APTRELAVQV  E+  L     + +A   GG S+  + + L+ G  +VV
Sbjct: 70  KSTGSIQAIVLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQIKQLRRGIDVVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D +  K L +  +   +LDEADEML++GF +D+E IL ++ K +RML FSAT+
Sbjct: 130 GTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTSKDKRMLFFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +AK +  +   + +       +  D     V   D+  A+  I+        IV
Sbjct: 190 PKEILRVAKKHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCRIMDLELDFYGIV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+     L +  +    L G++SQ  R   L+  ++ +  V IATDVAARGID
Sbjct: 250 FCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINVLIATDVAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL  VI+  +  +PE+ +HR GRTGRAG++G ++  I  +  R+  ++ R     +  
Sbjct: 310 VNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKILQIQRIVKTEIRK 369

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGFLRIH 424
           E  P V+ + +    R+ ++   L+ I  + K     +M + LL    P  + A  L   
Sbjct: 370 EKVPGVKEVIQAKKNRMREE---LNEILDERKYEGFQEMAEELLEGESPADVVAALLTHS 426

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----GSSWFSLSVGSKQKAE 480
              L               + +RD            DN +    G S   +++G K K  
Sbjct: 427 YQDLL------------DENNYRD-----------IDNVQVDKTGKSRLFIALGKKDKIT 463

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + ++ M+ + + I+   I  + V  + +F+ V
Sbjct: 464 PKKIVDMIKKKTTISEHKIKKVEVYENFSFMTV 496


>gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
 gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
          Length = 457

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --GLVLCPTRELADQVAGELRRLARFLLNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAI 378
            P+  +I
Sbjct: 369 PPANSSI 375


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +  +    +  
Sbjct: 26  VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 83

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV    +   A  +G  V    GG S  ++   L+ G H++V
Sbjct: 84  ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 139

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  R++ +FSAT+
Sbjct: 140 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 199

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 200 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 259

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D
Sbjct: 260 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 319

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R+ ER   +   +
Sbjct: 320 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 379

Query: 367 VVWEPAPSVEAIRE 380
           +     PSV+A+ +
Sbjct: 380 MQL---PSVDAVND 390


>gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
 gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
          Length = 486

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 211/379 (55%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 35  ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLNNLAGQETF 94

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L I+PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 95  VPFKERMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFAKQIQQL 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 155 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 213

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA    KD +R+ I + +  ++DI            +   + + L 
Sbjct: 214 TLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 273

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 274 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 333

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +    +  + RA  
Sbjct: 334 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 393

Query: 359 LFREANVSVV----WEPAP 373
            + EA +SV      EP+P
Sbjct: 394 EYLEARLSVSEIEGLEPSP 412


>gi|238797547|ref|ZP_04641044.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
 gi|238718544|gb|EEQ10363.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
          Length = 612

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 168/539 (31%), Positives = 258/539 (47%), Gaps = 47/539 (8%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102
           AQTGSGKT AFGL L   + AE        AP  L +APTRELA+QV   L        G
Sbjct: 2   AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V V    GG     + R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E I+   P + +  +FSAT+  AI  + + + KD   V I S      DI   
Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175

Query: 223 AVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              V    ++  A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L  ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDE 400
           G ++  +    +R  + + R   +++     P+ E + ER   R+ Q    +   ++  +
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGER---RLAQFAAKVGQQLESSD 352

Query: 401 KKMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPEEI-TPVSLVSGR-DRFRD- 448
             +   LLAK  PE+      +AA  L++    R  +  PE    P    + R DR  D 
Sbjct: 353 LDLYRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDR 412

Query: 449 -------------DSRAFKVGGGSRD------NFKGSSWFSLSVGSKQKAEARWLMPMLC 489
                        + RA    GG R       +      + + VG     E R ++  + 
Sbjct: 413 GNDRGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIA 472

Query: 490 RSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
               I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R
Sbjct: 473 NEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 531


>gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
 gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
          Length = 461

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 205/366 (56%), Gaps = 12/366 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ ++  +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPEQRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + +     + W+ 
Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGLAVSLVAPAEGHRAQAIEQLQKSPLRWDQ 371

Query: 372 APSVEA 377
             S+++
Sbjct: 372 LDSLKS 377


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 194/340 (57%), Gaps = 3/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GYVN T +Q   +   L  KD+L  AQTG+GKT AF + +   L A+
Sbjct: 27  NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  ++  AL + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 87  K---SLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLHKGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +++++  VLDEAD MLD+GF  DI+ +L   PK+++ L+F
Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K  V+++I  ++     I+     V   ++   +++IL     +
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL +      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++
Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTAL 363


>gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894]
          Length = 635

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 203/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +  E  R  
Sbjct: 17  ILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLHNI-DETLR-- 73

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 74  ---APQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +  +    +  
Sbjct: 20  VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV    +   A  +G  V    GG S  ++   L+ G H++V
Sbjct: 78  ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  R++ +FSAT+
Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D
Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R+ ER   +   +
Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373

Query: 367 VVWEPAPSVEAIRE 380
           +     PSV+A+ +
Sbjct: 374 MQL---PSVDAVND 384


>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
 gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + ++L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITSLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +  +  R+ +A +      I+  AV    S +D         +  ++ 
Sbjct: 187 TMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEKRTVLRQLID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAIVFC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R+ 
Sbjct: 247 REGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEGFREGSIRLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +   V+P++
Sbjct: 307 IASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVVPRD 360


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 192/343 (55%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + G+   T +Q   +   L   DV+  AQTG+GKT AFG+ L + + A+  +  
Sbjct: 13  IMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPLINKINAKLRKVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L +APTRELA+QV  E+  L     V      GG  + R+ R L++G  IVV 
Sbjct: 73  ------GLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQIRALKDGPQIVVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+R K + I  +   VLDEADEML++GF DDI  IL   P++R+ L+FSAT+ 
Sbjct: 127 TPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPEERQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A    K+   V + ++     +ID   + +    + + + N L  +  + AI+F
Sbjct: 187 KEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNHLDINSPELAIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    + L    ++   + G+L+Q +R + L+  + GR  V +ATDVAARG+D+
Sbjct: 247 ARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVLVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             +  V + ++  +PE+ +HR GRTGRAG+ G ++ F+ P+ M
Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREM 349


>gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
 gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
          Length = 629

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +  +     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLHNIDPD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + E+     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-LFREANVSVV 368
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +N +RR  R + R   +++ 
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV-ENRERRLLRNIERTMKLTIP 369

Query: 369 WEPAPSVEAIRER 381
               P+ E + +R
Sbjct: 370 EAELPNAELLGKR 382


>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
 gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
          Length = 657

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 168/565 (29%), Positives = 270/565 (47%), Gaps = 46/565 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS+ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   + A+     
Sbjct: 18  ILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNIDAD----- 72

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++      V V    GG     + R L+ G  +VV
Sbjct: 73  -LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQVVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+
Sbjct: 132 GTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  + + + KD   + I +      DI      V    ++ A+V  L       AI+
Sbjct: 192 PEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 252 FVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 312 VERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 371

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P  + + +R     A++I Q    L+S   D+ +    LLAK  P      E +AA 
Sbjct: 372 VELPDADLLSQRRQAKFAEQIQQQ---LESSDLDQYR---SLLAKMSPSEDVDMETLAAA 425

Query: 420 FLRI---HRAGLC----------------APEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            L++    RA +                            S  + F    R  +     R
Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRGNDRRDRNSNGNGFDRAERGDRGARRER 485

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG     E R ++  +   + I+ + IG I++    + +E+     AD
Sbjct: 486 RDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMPAD 545

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKP 541
            +  L R   L+K  Q++ +G  +P
Sbjct: 546 VLTHLSRARILNKPTQMQLIGDAQP 570


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +  +    +  
Sbjct: 20  VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV    +   A  +G  V    GG S  ++   L+ G H++V
Sbjct: 78  ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  R++ +FSAT+
Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D
Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R+ ER   +   +
Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373

Query: 367 VVWEPAPSVEAIRE 380
           +     PSV+A+ +
Sbjct: 374 MQL---PSVDAVND 384


>gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
          Length = 455

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/373 (36%), Positives = 205/373 (54%), Gaps = 14/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DASLFQT--- 72

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            LAL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 73  -LALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q  R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKS 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 308 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 366

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 367 PPANSSIVTLEAE 379


>gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 629

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 200/372 (53%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 17  ILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 191 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +  ATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILTATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 371 VELPNAELLGKR 382


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 265/551 (48%), Gaps = 43/551 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L  +N  
Sbjct: 60  QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +       L + PTRELA QV    +   +++     V I GG     +   L+    +
Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I  +  +VLDEADEML++GF +DIE+I+D  P+ ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  + + V    + +A+  IL  +  +  
Sbjct: 235 TMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L       +
Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413

Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
                PS + I E+  ++++   +  FL   + +E K + + +  +  EK +     I  
Sbjct: 414 EEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNIAM 473

Query: 426 AGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS-----------------RDNFKG 465
           A          ++LV G   F    DDS   K                      R+N++ 
Sbjct: 474 AA---------INLVIGNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQN 524

Query: 466 SSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            S+  +  + G         ++  +C S+ IN +SIG I++  D + V++     DL R 
Sbjct: 525 DSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRE 581

Query: 524 TVKLDKGIQLK 534
           T    K I+L+
Sbjct: 582 TKNKLKKIKLR 592


>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
 gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 621

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 146/424 (34%), Positives = 220/424 (51%), Gaps = 23/424 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS+ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + +  E     
Sbjct: 17  ILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLNNVNPE----- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV     E+     GV V    GG     + R L+ G  +VV
Sbjct: 72  -LKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQRYDVQLRALRQGPQVVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P   +  +FSAT+
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPDGHQTALFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + +  D   V I S      DI      V    ++ A++  L       AI+
Sbjct: 191 PEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALIRFLEAEDFDAAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 251 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 311 VDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPE 370

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
              P+ E + +R     A ++ Q    L+S   D+ +    LLAK  P      E +AA 
Sbjct: 371 VELPNAELLGQRRLAKFAAKVQQQ---LESSDLDQYR---ALLAKLQPSAELDVETLAAA 424

Query: 420 FLRI 423
            L++
Sbjct: 425 LLKM 428


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 204/387 (52%), Gaps = 35/387 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 41  IARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQR 100

Query: 68  -------------RFSPASA-PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
                        R  PA A P  L + PTRELA+QV       GR L        +V A
Sbjct: 101 PRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 154

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S I+ R    
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIEERLHFT 274

Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             LS +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+ 
Sbjct: 275 DDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNR 334

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 335 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 394

Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368
            ++        RR ER   R  + +VV
Sbjct: 395 NLVNHGDTFQWRRIERFVDRRIDATVV 421


>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 477

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/330 (36%), Positives = 187/330 (56%), Gaps = 1/330 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  LT VQE  + P  R +D+LV+AQTG+GKT AFG  L   LL E  R +      AL
Sbjct: 48  GFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQQLL-EKPRATQPGHTRAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL  QV   L+     T + +A   GGV    +   LQ G  ++V TPGRL +H
Sbjct: 107 VLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANKLQAGLDVLVATPGRLLEH 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    +N+  ++ +VLDEAD MLD+GF  +I  +L+   KK ++L FSAT++ ++TTLAK
Sbjct: 167 VELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKPQILFFSATLTQSVTTLAK 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                 + V ++  N     +++    V  + +    + +LR H     +VF STR    
Sbjct: 227 EILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTHNWFQVMVFSSTREEAD 286

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +    L E   +   +  E +Q  R  AL+  ++G+ +V +AT+VAARG+D+  L+ V++
Sbjct: 287 KLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATEVAARGLDIQGLDYVVN 346

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L    E+ +HR GRTGRAG KG+++ ++
Sbjct: 347 LDLPFFIEDYVHRVGRTGRAGSKGIAISLV 376


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +  +    +  
Sbjct: 26  VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 83

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV    +   A  +G  V    GG S  ++   L+ G H++V
Sbjct: 84  ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 139

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  R++ +FSAT+
Sbjct: 140 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 199

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 200 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 259

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D
Sbjct: 260 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 319

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R+ ER   +   +
Sbjct: 320 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 379

Query: 367 VVWEPAPSVEAIRE 380
           +     PSV+A+ +
Sbjct: 380 MQL---PSVDAVND 390


>gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
 gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
          Length = 457

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 141/404 (34%), Positives = 221/404 (54%), Gaps = 20/404 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G++ +  VQ   L   L   DV   A+TGSGKT+AFGL +   +   N  F    A
Sbjct: 17  LSSLGFIQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAFGLGIIQKI---NPSFF---A 70

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PT ELA QV +E+  L  A   + V    GGV++  +   L++GAHI+VGTPG
Sbjct: 71  CQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQIESLKHGAHIIVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+   L++S +K  VLDE D MLD+GF DDI  I  ++P +++ L+FSAT    I
Sbjct: 131 RILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATPLRKQTLLFSATFPEHI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +++ +Q++ V + +  E +  +++D+     + S+R    V IL+++   + + FC+T
Sbjct: 191 KKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSDSERFAHSVQILKHYQPISTLAFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    + +  L E       L GE+ ++ER + L    +    V +ATDVAARG+D+  L
Sbjct: 251 RTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSVLVATDVAARGLDIEGL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
           + V++ ELS N    +HR GRTGR   +G+    V P+ M  R +R+  +  +   WE  
Sbjct: 311 DAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMY-RFDRIDAQIPLESKWEKI 369

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL--LAKH 411
           PS    R+R+    L  P+   SI+G   D+ + VD++  + KH
Sbjct: 370 PS--NTRKRN----LVAPMRTISIKGGKKDKLRKVDLIGAMTKH 407


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 195/354 (55%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-------AIVNILR 240
           T++P I  +   +     R+ +A +      I+   VL   S RD         +  ++ 
Sbjct: 187 TMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLRALID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   R+G+ R+ 
Sbjct: 247 AEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++   IP++
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRD 360


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 212/374 (56%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +  +    +  
Sbjct: 20  VMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVK-- 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +APTRELA+QV    +   A  +G  V    GG S  ++   L+ G H++V
Sbjct: 78  ----PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  R++ +FSAT+
Sbjct: 134 GTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL        I+
Sbjct: 194 PPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILEVETFDAMII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +ATDVAARG+D
Sbjct: 254 FVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  + M R+ ER   +   +
Sbjct: 314 VERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQIERATHQPIEA 373

Query: 367 VVWEPAPSVEAIRE 380
           +     PSV+A+ +
Sbjct: 374 MQL---PSVDAVND 384


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 202/382 (52%), Gaps = 9/382 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L +KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y    + + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA---QRILQDPLF 392
           S E + +  A   ++I   P+ 
Sbjct: 372 SKEEVMKEKAAFEEKIHAKPII 393


>gi|85860953|ref|YP_463155.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85724044|gb|ABC78987.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 572

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/353 (38%), Positives = 193/353 (54%), Gaps = 12/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK F    I   I + L   G+  +T VQE I+   L R+ D++  AQTG+GKT AFG+ 
Sbjct: 1   MKTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           L         R        AL + PTREL VQV  +L  +  Y +   +V V  GG S+ 
Sbjct: 61  LIQLTDTRLKRTQ------ALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPV-YGGASIV 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  +L+ GA +VV TPGRL D IR   +++S +  VVLDEADEML +GF+D++  IL  
Sbjct: 114 SQTEELRKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAV 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P  +  L+FSAT+   +  +A NY KD + + +   N    ++D+   +V+   R  A+
Sbjct: 174 TPDSKNTLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I   +    AI+FC TR         L E  +   AL G+LSQ +R + +   R    
Sbjct: 234 RRIADMNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNI 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R+ +ATDVAARG+D+ DL  VI+  L        HRSGRTGRAG+KG+S+ +I
Sbjct: 294 RMLVATDVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALI 346


>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 198/354 (55%), Gaps = 11/354 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF----- 54
           K F + P  + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF     
Sbjct: 3   KTFADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 55  -GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGV 112
             LA   T +   +R    + P  L + PTRELA QV ++ + ++    G  +A  +GG+
Sbjct: 63  NALAAQETFVPFKERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGM 122

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              ++ + L+ GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I
Sbjct: 123 PFGKQIQQLK-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAI 181

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDR 231
            D +  +++ LMFSAT +  I TLA+    D  R+ I + +  ++DI            +
Sbjct: 182 SDLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDGFEHK 241

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R
Sbjct: 242 KKLLTHWLSAEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIR 301

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 302 EGRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAI 355


>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 383

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 130/337 (38%), Positives = 187/337 (55%), Gaps = 4/337 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68
           I +AL E GY   T +Q   +   L  KD+L  AQTG+GKT AF + +   LL EN   +
Sbjct: 12  IKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPMLQ-LLHENPVGK 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F   S   AL + PTRELA+Q+G         T V   V  GGV    +   L  G  ++
Sbjct: 71  FE-RSRIRALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTDALAKGVDVL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I    + ++ L+  VLDEAD MLD+GF  D++ ++   P KR+ L FSAT
Sbjct: 130 IATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPGKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI TLA    ++ V+V +   +     I      V  S++++ +++IL+      A+
Sbjct: 190 MPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSLLLHILQDESIATAL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  KVL +      A+ G  SQ  R NAL+  ++   RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ DL  VI+ E+ + PE  +HR GRTGRAG KG+++
Sbjct: 310 DVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIAL 346


>gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
 gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
          Length = 584

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 204/357 (57%), Gaps = 14/357 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56
           M +FE +   + I +A+S+ G+   + +Q+  + P L     D++  AQTG+GKT AFG 
Sbjct: 1   MNLFEQLGLDEPILKAISDMGFEIPSEIQQKAI-PTLLANGADMVALAQTGTGKTAAFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSV 114
            L   L+  + R +       L ++PTREL +Q+  EL   YAK    V V    GG S+
Sbjct: 60  PLLQ-LIDTDSRVTQG-----LILSPTRELCLQIASELRN-YAKYLPKVNVVAVYGGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL 
Sbjct: 113 EEQARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A
Sbjct: 173 HTPQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  +
Sbjct: 233 LKRLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++
Sbjct: 293 IQMLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKS 349


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 187/332 (56%), Gaps = 10/332 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   + P L  KD+L +AQTG+GKT+ +G+A  + LL  NDR S A     L I PT
Sbjct: 26  TPIQAQAIPPALLGKDILGTAQTGTGKTLCYGIACINKLL--NDRGSNA-----LIICPT 78

Query: 84  RELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           RELAVQVG  L  L   T  +  AV IGG S+ ++ R LQ    +++GTPGRL DH++ K
Sbjct: 79  RELAVQVGDVLNGLIENTMNIKSAVLIGGESMQKQLRQLQKRPRLIIGTPGRLNDHLKRK 138

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L +     +VLDE D MLD+GF   +E IL   PKK + L+FSAT+   I  + + Y  
Sbjct: 139 SLKLHQSYFLVLDETDRMLDMGFIPQVEQILKFVPKKHQTLLFSATLPQNILKITERYLN 198

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D +R+ + S     S I    + V+  D+ N +   L Y    + ++F  T+ +  +   
Sbjct: 199 DPIRIRVGSTTTPISKIKQEVIQVSEGDKYNKLQEEL-YKRKGSILLFVKTKRNADKMAD 257

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L +   +   + G L Q +R   L   R G+ R+ I+T++A+RG+D+P ++ VI+  L 
Sbjct: 258 RLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGKIRILISTELASRGLDVPSIQHVINYHLP 317

Query: 323 SNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             PE+ +HR GRT RAG +G ++ F+ P + Q
Sbjct: 318 QVPEDFIHRIGRTARAGAEGCALTFITPNDRQ 349


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 209/392 (53%), Gaps = 20/392 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L   GY  +TS+Q   L   L+ +D++  A+TGSGKT AFG+ +   L       +P   
Sbjct: 19  LDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKL-------NPTWF 71

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A   L I PTRELA QV  EL  L  +A    ++ +C GG  +  +   L++GAHIVVGT
Sbjct: 72  AIQGLVICPTRELADQVSNELRRLARFADNIKILTLC-GGAPMRPQIASLEHGAHIVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI    +N+S ++ +VLDEAD M+D+GF ++I  I+ + P++R+ L+FSAT   
Sbjct: 131 PGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLFSATYPD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            I   +  + +D V V + +   QH D  I+ R   V   DR+ A+  +L+++   + + 
Sbjct: 191 DIRKASAEFLRDPVEVKVEA---QHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLA 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAARG+D
Sbjct: 248 FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLD 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +         W
Sbjct: 308 IQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQKPAQW 367

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
               S E     D    L  P+    I G +K
Sbjct: 368 FDLKSAEPAEGGD----LHAPMVTLCIMGGKK 395


>gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 457

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 206/372 (55%), Gaps = 10/372 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSITPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   +  +L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAIRERDAQ 384
           P+   I    A+
Sbjct: 370 PTGNTIAPLTAE 381


>gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895]
 gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895]
          Length = 649

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 201/372 (54%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L + L  E     
Sbjct: 34  ILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPE----- 88

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              AP  L +APTRELAVQV   + ++     GV V    GG     + R L+ G  IVV
Sbjct: 89  -LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+  +  +FSAT+
Sbjct: 148 GTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  + + + K+   V I S      DI      V    ++ A+V  L       AI+
Sbjct: 208 PEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAII 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D
Sbjct: 268 FVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLD 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++  
Sbjct: 328 VERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 387

Query: 370 EPAPSVEAIRER 381
              P+ E + +R
Sbjct: 388 VELPNAELLGKR 399


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ E       
Sbjct: 15  QTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKVVGE------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L+       V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI TL + + K    +   +       ID    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 398

 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 8/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   T +Q+  +   L +KD+L  AQTG+GKT  F L L   L    D+ S
Sbjct: 12  ILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLELL--SRDKSS 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QVG  +            +  GGVS++ +   L+ G  IV+ 
Sbjct: 70  TKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRKGVDIVIA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +++  ++ +VLDEAD MLD+GF +DI+ +L   PK ++ L+FSAT S
Sbjct: 130 TPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQTLLFSATYS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+       V + +   N+    I      V    +   +V++++    +  +VF
Sbjct: 190 DEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKEGKWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ +  L +      A+ G  SQ  R  ALQ  +DG  RV +ATD+AARGID+
Sbjct: 250 TRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREANVSVV 368
             L  VI+ EL + PE+ +HR GRTGRAG  G  +S+  I ++    +     + ++  V
Sbjct: 310 DQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEKLIKTDIQKV 369

Query: 369 W----EPAPSVEA 377
           W    +P PS++A
Sbjct: 370 WLKDFKPDPSIKA 382


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 198/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y    + + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEEEKLSLLKDVTIIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 131/397 (32%), Positives = 217/397 (54%), Gaps = 27/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +P 
Sbjct: 33  KSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLV-------EKMNPE 85

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 86  SPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P   + L+FSAT+  
Sbjct: 146 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTLLFSATMPA 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 206 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 266 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R         
Sbjct: 326 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR--------- 371

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
              ++E   +R   R +++P   ++++G ++  VD L
Sbjct: 372 ---AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVDRL 404


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 204/367 (55%), Gaps = 20/367 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----TLLAENDRFS 70
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L      TL        
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQ---- 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+
Sbjct: 74  ------ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P+ R+ L+FSAT
Sbjct: 127 VATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              AI  ++   Q+  +R+ I + +   + I+ +    ++ ++ + +  +L  H   + +
Sbjct: 187 WPDAIAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSVHEKISLLQTLLSQHQPASCV 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+
Sbjct: 246 VFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGL 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + +
Sbjct: 306 DIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKL 364

Query: 368 VWEPAPS 374
            W  AP+
Sbjct: 365 NWLNAPA 371


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 143/397 (36%), Positives = 210/397 (52%), Gaps = 15/397 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY  +T +Q A L   L   D++  A++GSGKT AF LAL + L A   RF     
Sbjct: 23  LAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLARLDAR--RFDVQ-- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPG
Sbjct: 79  --ALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I
Sbjct: 137 RIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTRQTLLFSATYPDGI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ + ++   V +  E    S I  R   V   +R +A+  +L+++   + I FC+T
Sbjct: 197 AKLSQQFLRNPKEVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLKHYRPVSTIAFCNT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 256 KQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +     V W P  
Sbjct: 316 EAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIEQALGRDVEWHPLA 375

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
            ++A    D    L  P+    I G  K  +   DVL
Sbjct: 376 ELKA----DGNEPLLPPMETLQILGGRKDKIRPGDVL 408


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score =  213 bits (542), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L +SA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240
           T++P I  +   +   AV++ +A +      I+ + + V       + +D+   +  ++R
Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V    K L +H F    + G+L Q +R   L   RDG   + 
Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350


>gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 621

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 266/538 (49%), Gaps = 49/538 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLL 63
           N+   I  A+ E GY     VQE  + P + E+  D++  AQTG+GKT AFGL + + + 
Sbjct: 7   NLKDDILSAIEELGYAQPMPVQEKTI-PFMLEQTADLVALAQTGTGKTAAFGLPVLNMID 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDL 121
           A   +        AL +APTREL +Q+  +L+  Y+K   G+ +    GG  +  + R L
Sbjct: 66  AGRKQVQ------ALVLAPTRELCIQIANDLKG-YSKNMRGMRIVPVYGGEDIRTQLRQL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL D I    + +  +  +VLDEADEML++GF++DIE IL+ +P+ RR
Sbjct: 119 DTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTPETRR 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  +AK Y K+   + + ++N    ++++   +     R   +  I+  
Sbjct: 179 TMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQARQRYLVLKRIVDL 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVFC TR         L    +   AL G+LSQ +R N +Q  R    ++ +AT
Sbjct: 239 NPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQLLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ DL  VI+  L  + E   HRSGRTGRA +KG++V +I    + + + + R
Sbjct: 299 DVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIKDIER 358

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLF-----LDSIQGDEKKMVDVL--------- 407
               + + E  P        +   + +  LF     +++++  E+++   +         
Sbjct: 359 MLRKTFIQEQIP--------NGLEVCKKQLFYMIDRMENVEVSEEQIETYMPQIMKQLEY 410

Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRD 461
           L+K +  K  ++  F R       A +   P     G    R+  R+D R  K GG  R 
Sbjct: 411 LSKEELLKRFVSLEFNRFLSYYKNAEDLNLPERSERGERGERNGDRND-RGSKSGGKVR- 468

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
                    ++VG ++  + +  + ++   +G    SIG+I V    TF +V +D V+
Sbjct: 469 -------LKMNVGEREGIDPKRFLGIINDVTGDKSISIGSIEVTNKFTFFDVFSDQVE 519


>gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
 gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
          Length = 424

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 208/395 (52%), Gaps = 11/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I ++L E+GY   TS+Q   +   L+ +DVL SAQTG+GKT AF + +   L  +
Sbjct: 7   NIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQHLAND 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +        L+L + PTRELA+Q+G         T +   V  GGV    +   L++G 
Sbjct: 67  LENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTNKLKSGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +    +++  +K  VLDEAD MLD+GF  DI+ +L   PK R+ L F
Sbjct: 127 DVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKNRQSLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL+    K+  +V +   +     I         +++ + +++IL      
Sbjct: 187 SATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTTNKTNKGDLLLHILEDPKID 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    R  + L +   +  A+ G  SQ +R  AL+  +DG  RV +ATD+AA
Sbjct: 247 QVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIRVMVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQ--RRAERLFRE 362
           RGID+  LE VI+ ++ + PE  +HR GR GRAG  G+++ +  P+ +Q  +  E+L ++
Sbjct: 307 RGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFIKDIEKLIKQ 366

Query: 363 ANVSVVWEPAP--------SVEAIRERDAQRILQD 389
               +   P P        S +   E++ QRI Q+
Sbjct: 367 KITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQE 401


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 190/353 (53%), Gaps = 4/353 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L   LL       P 
Sbjct: 23  QGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL +APTREL  Q+   LE     T V V    GG S++R+   L  GA I+V TP
Sbjct: 83  TI-RALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    + + H   +VLDEAD+MLD+GF   +  I    P KR+ L+FSAT+   
Sbjct: 142 GRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPKL 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  Y ++ V+V +A   +    I          D+   + + L+ H  + A+VF  
Sbjct: 202 IEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQKHPREQALVFGR 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V +ATDVAARGID+P 
Sbjct: 262 TKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVLVATDVAARGIDIPG 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           +  V + ++ + PEN +HR GRT RAG +G +V FV P  M+  R  E+L ++
Sbjct: 322 VRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRAVEKLLKQ 374


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 200/350 (57%), Gaps = 5/350 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+++ + + + G+  LT VQE  +   L  +D+   AQTG+GKT AF +AL + LL  
Sbjct: 7   NLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALYTRLL-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+    +  P AL +APTREL VQ+  + + L   + + +    GGV   R+R+    G 
Sbjct: 65  NNPQPTSENPRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAFGKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IVV TPGRL D+ + K  +   ++ +V+DEAD M D+GF  D+ FIL   P   KR+ +
Sbjct: 125 DIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDKRQTM 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+SP +  LA ++  +A +V I  E      ++     V   ++   ++ +L    
Sbjct: 185 LFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLLNGRM 244

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           A    +VF +T+      T+VL  +  +   +SG++SQ +R   L   ++G+ +V +ATD
Sbjct: 245 ADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVLVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           VA+RGI + D+  V++ ++  +PE+ +HR GRT RAG  G+++ +  +++
Sbjct: 305 VASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDL 354


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/333 (36%), Positives = 184/333 (55%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+GY   + +QE  +   L  KDVL  AQTG+GKT AF L +   L+  +D+    
Sbjct: 14  KALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQNLMRPSDKKHSK 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTRELA+Q+    +   + T V  AV  GGVS   + ++LQ G  I+V TP
Sbjct: 74  RVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKELQRGIDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    +++SH++  VLDEAD MLD+GF  D++ I+   P K++ L+FSAT+ P 
Sbjct: 134 GRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVKKQTLLFSATMPPE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L +    +   V +   +     I+     V   ++   +V++L+     + +VF  
Sbjct: 194 IQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLKREAITSTLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L ++     A+ G+ SQ  R  AL   + G  RV  ATD+AARGID+ +
Sbjct: 254 TKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRVLAATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 314 LSCVINFDLPNVPETYVHRIGRTGRAGLGGRAI 346


>gi|323187577|gb|EFZ72886.1| ATP-independent RNA helicase dbpA [Escherichia coli RN587/1]
          Length = 457

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 134/367 (36%), Positives = 202/367 (55%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVRAKTGSGKTAAFGLGLLQQI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --GLVLCPTRELADQVAGELRRLARFLLNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 310 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 368

Query: 372 APSVEAI 378
            P+  +I
Sbjct: 369 PPANSSI 375


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L +SA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240
           T++P I  +   +   AV++ +A +      I+ + + V       + +D+   +  ++R
Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V    K L +H F    + G+L Q +R   L   RDG   + 
Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQSQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|241767104|ref|ZP_04764875.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362321|gb|EER58319.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 469

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 134/334 (40%), Positives = 194/334 (58%), Gaps = 12/334 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY  +T +Q A L P L  KD++  A TGSGKT AF LAL + L     RF    A
Sbjct: 25  LQQLGYTRMTPIQAASLPPALLGKDLIAQASTGSGKTAAFALALLANLNPR--RF----A 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV  E+  L  A+  + V    GGV +  +   L++GAHIVVGTPG
Sbjct: 79  VQALVLCPTRELADQVTAEIRRLARAEENIKVVTLCGGVPLRGQMLSLEHGAHIVVGTPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+  + L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I
Sbjct: 139 RVMDHLERQHLTLEALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPEGI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             L+  + K  V++ + +   QH++  I+ R   V  S+R +A+  +L +   +++I FC
Sbjct: 199 AKLSAQFMKTPVQITVQA---QHAEGKIEQRWYEVKNSERLHAVSQLLNHFRPESSIAFC 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+ 
Sbjct: 256 NTKQQCRDLVAVLQAQGFSALALYGELEQRERDQVLVQFANKSCSVLVATDVAARGLDIA 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L  VI+ +++ +PE  +HR GRTGR   +G+++
Sbjct: 316 NLAAVINVDVTPDPEVHIHRIGRTGRGDAEGLAL 349


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L +SA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240
           T++P I  +   +   AV++ +A +      I+ + + V       + +D+   +  ++R
Sbjct: 187 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V    K L +H F    + G+L Q +R   L   RDG   + 
Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 350


>gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           3502]
 gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           19397]
 gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall]
 gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall]
          Length = 481

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 195/354 (55%), Gaps = 10/354 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  L-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L L E D       P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 66  LELEEKD-------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + LN+  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   +  L K Y  +   +NI  EN     I+     V   D+   +  I+ 
Sbjct: 179 VTMLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFYLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     + L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVR 352


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/350 (36%), Positives = 191/350 (54%), Gaps = 13/350 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPMITALARGR- 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQEQLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +  +  RV +A +      I+  AV    S RD       + +  I+ 
Sbjct: 187 TMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEKRDVLRQIID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAIVFC+ +  V    K L +H +    + G+L Q +R+  L   RDG  R+ 
Sbjct: 247 REGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDGFRDGSIRLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +  ++
Sbjct: 307 IASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIV 356


>gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 371

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 189/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL E+GY N T +QE  +   L+ +D+L  AQTG+GKT AF + +   L  +
Sbjct: 7   NIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPIIQHLY-Q 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL I PTRELA+Q+   +      TG+   V  GGV    +  +L  G 
Sbjct: 66  NKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDELHKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    ++++ +   VLDEAD MLD+GF  DI+ +L   PK ++ L F
Sbjct: 126 DILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  L+++  ++ VRV +A  +     I+     V   D+ + ++N+L+    +
Sbjct: 186 SATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLLKKDKKQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    +  ++L +      A+ G  SQ  R  AL   +  + RV IATD+AA
Sbjct: 246 SVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRVLIATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  LELVI+ +L   PE  +HR GRTGRAG  G ++
Sbjct: 306 RGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTAL 345


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 159/536 (29%), Positives = 260/536 (48%), Gaps = 46/536 (8%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L  +N  
Sbjct: 60  QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +       L + PTRELA QV    +   +++     V I GG     +   L+    +
Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I H+  +VLDEADEML++GF +DIE+I+D  P+ ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  + + V    + +A+  IL  +  +  
Sbjct: 235 TMPSEIKNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L       +
Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422
                PS + I E+  ++++ D +   S+  DE +     ++DVL   +  EK +     
Sbjct: 414 EEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKSLIIDVL--DNLKEKYSMDDSN 470

Query: 423 IHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFK-----------------VGGGSRDN 462
           I  A          ++LV G   F    DDS   K                      R+N
Sbjct: 471 IAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSNRRNN 521

Query: 463 FKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           ++  S+  +  + G         ++  +C S+ IN +SIG I++  D + V++  D
Sbjct: 522 YQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 193/347 (55%), Gaps = 13/347 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +QE  + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 11  PKVL-KAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPMI-TLLARGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     R+ +A +      I+   V++    RD         +  ++ 
Sbjct: 187 TMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTKRKVLRALID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +   A+ G+L Q  R+  L+  R+G  R  
Sbjct: 247 AEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEGFREGSLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+DVAARG+D+P +  V + ++ S+PE+ +HR GRTGRAGR+G ++
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAI 353


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 18/378 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 11  PKVL-KAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQDALIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     R+ +A +     +I    VL   S RD         + +++ 
Sbjct: 187 TMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEKRKLLRHLID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R   L   R+G  R  
Sbjct: 247 QEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDEFREGNLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +     ++  E 
Sbjct: 307 VASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICVPKDEKNLED 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +V +  P +E
Sbjct: 367 IER-----LVQQEIPRIE 379


>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 565

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/353 (36%), Positives = 193/353 (54%), Gaps = 13/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I EAL++ G V+   +Q   L   L   D++  A+TG+GKT+ FG+ +   + A 
Sbjct: 42  NVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQRVTAP 101

Query: 66  NDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D    A     AP AL + PTRELAVQV  +L+    K G  +    GG +   +   L
Sbjct: 102 KDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEPQIESL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGRL D  + + LN+ +++ VVLDEADEMLDLGF  D+E ++ ++P  R+
Sbjct: 162 TKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAATPAVRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235
            ++FSAT+   I  +A+ Y      +  A  +      R    + YRA  +   D+   +
Sbjct: 222 TMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSM---DKIEVV 278

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    I+F  T+ + ++  + LAE  F   A+ G+L Q  R  AL+  R+ + 
Sbjct: 279 ARILQARGRGRTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNNKV 338

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +
Sbjct: 339 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFV 391


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ E       
Sbjct: 15  QTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPLIEKVVGE------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L+       V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI TL + + K    +   +       ID    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/402 (34%), Positives = 215/402 (53%), Gaps = 10/402 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q+  +   L  +DVL  AQTGSGKT AF L L    LA+ D       P  L +APT
Sbjct: 4   SPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPL----LAQID--PTKRHPQMLVMAPT 57

Query: 84  RELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           RELA+QV    E       GV V    GG     + R L+ G+ +VVGTPGR+ DHIR  
Sbjct: 58  RELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRG 117

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  + + + +
Sbjct: 118 TLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMQ 177

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D   V I +  R   DI     LV    +++A++  L       AI+F  T+      T+
Sbjct: 178 DPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITE 237

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV++ ++ 
Sbjct: 238 LCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFDIP 297

Query: 323 SNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPSVEAIR 379
            + E+ +HR GRTGRAGR G + +FV P+   + R  E L ++    V       + A R
Sbjct: 298 LDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEILMAKR 357

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               +  +   L    ++   + + D+  A  D E++AA  +
Sbjct: 358 REKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMM 399


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 197/366 (53%), Gaps = 6/366 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   +  + ++    
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+   HIVVGTP
Sbjct: 72  --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++S +   V+DEADEML++GF   +E I+   PKKR  L+FSATI   
Sbjct: 130 GRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPDE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   +    + + I S+N    ++ + A  V  + + +++ NIL     + ++VFC 
Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNNILISEMPETSVVFCR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+A+RGID+  
Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++    E  +HR GRTGRAG KG+++     +  R    +       +  +  
Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYIGFKLEVKNL 369

Query: 373 PSVEAI 378
           PS E I
Sbjct: 370 PSKEEI 375


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L     R
Sbjct: 33  QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 92

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA ++
Sbjct: 93  ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 149

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 150 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 209

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243
           + P I  LA  + ++  R+ +A        +  R   VA   +D     +LR        
Sbjct: 210 MPPEIQKLADRFLQNPERIEVAKPASTAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 267

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+DV
Sbjct: 268 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNLQLLVASDV 327

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 372


>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
          Length = 506

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 209/392 (53%), Gaps = 20/392 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L   GY  +TS+Q   L   L+ +D++  A+TGSGKT AFG+ +   L       +P   
Sbjct: 61  LDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKL-------NPTWF 113

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A   L I PTRELA QV  EL  L  +A    ++ +C GG  +  +   L++GAHIVVGT
Sbjct: 114 AIQGLVICPTRELADQVSNELRRLARFADNIKILTLC-GGAPMRPQIASLEHGAHIVVGT 172

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI    +N+S ++ +VLDEAD M+D+GF ++I  I+ + P++R+ L+FSAT   
Sbjct: 173 PGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLFSATYPD 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            I   +  + +D V V + +   QH D  I+ R   V   DR+ A+  +L+++   + + 
Sbjct: 233 DIRKASAEFLRDPVEVKVEA---QHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPVSTLA 289

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAARG+D
Sbjct: 290 FCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAARGLD 349

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +         W
Sbjct: 350 IQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQKPAQW 409

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
               S E     D    L  P+    I G +K
Sbjct: 410 FDLKSAEPAEGGD----LHAPMVTLCIMGGKK 437


>gi|86133600|ref|ZP_01052182.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820463|gb|EAQ41610.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 373

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 197/359 (54%), Gaps = 13/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +++ E G    T +QE  +   L+   D +  AQTG+GKT AFGL +   + A +D    
Sbjct: 15  KSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLPVLHHIDANSDHIQ- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                AL ++PTREL  Q+ ++L     Y    + +    GG  + R+  +L+   HIV+
Sbjct: 74  -----ALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKIDRQMNNLKRTTHIVI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188
            TPGRL D I    ++ISH+K V+LDEADEML +GF+ D+  IL  + K  R+  +FSAT
Sbjct: 129 ATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKFTTKSDRKTWLFSAT 188

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +   I  + K Y   +A R+ I      +++I ++     L ++   IV  L    A+  
Sbjct: 189 MPDEIKRIVKTYMDANAPRIEINKNTLVNANIRHQFAKTTLKEKVADIVTFLEKRQAQRG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+A      K L +  F   AL G++ Q+ER   ++  ++   +  I+TDV+ARG
Sbjct: 249 IIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNESLQYLISTDVSARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365
           ID+ +LE VIH +L    E   HRSGRT RAG+ G S+ F++P  ++ +  +L +E N+
Sbjct: 309 IDVRELEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPSELE-KIHQLQKELNI 366


>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 378

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 193/345 (55%), Gaps = 5/345 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----- 60
           NI + I +AL+E+GY   T +QE  + P +  +D+L  AQTG+GKT AF + +       
Sbjct: 7   NIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPIIQHLHLD 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  E +      A  AL + PTRELA+Q+G  L+     T +   V  GGV    +   
Sbjct: 67  SLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQGSQVNR 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +    + I+ ++  VLDEAD MLD+GF  DI+ +L   PK R
Sbjct: 127 LKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLPRLPKNR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+  +I +L+++  K+ +R+ +   +     I+     V  +D+ + +V +L 
Sbjct: 187 QTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVYFVEQNDKKDLLVKLLH 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ +VF  T+   ++  K + +       + G  SQ  R  AL+  +  + RV +A
Sbjct: 247 EGDMKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFKAHKTRVLVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +LELV++ +L + PE  +HR GRTGRAG  G ++
Sbjct: 307 TDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKAL 351


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 192/340 (56%), Gaps = 3/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GYVN T +Q   +   L  KD+L  AQTG+GKT AF + +   L A+
Sbjct: 27  NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      A   L + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 87  RNLNKSIKA---LILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLHKGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +++++  VLDEAD MLD+GF  DI+ +L   PK+++ L+F
Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K  V+++I  ++     I+     V   ++   +++IL     +
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL +      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++
Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTAL 363


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 207/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P+ R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/339 (38%), Positives = 192/339 (56%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L  +  
Sbjct: 17  PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARL--DTR 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF       A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH
Sbjct: 74  RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+FS
Sbjct: 130 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L++   ++   V +  E    S I  R   V   +R +A+  +L+++   +
Sbjct: 190 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPVS 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 249 TLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++
Sbjct: 309 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 347


>gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA]
          Length = 481

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 203/378 (53%), Gaps = 8/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q I +AL+  GY   T +QEA++   L  +D+   +QTG+GKT+AF + +    + E
Sbjct: 9   NLSQPILDALTLLGYTTPTPIQEAVIPKALNGQDIAARSQTGTGKTLAFAVPICEQAVWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +       P AL + PTRELAVQV RE+  +  K  + V    GG  + ++ + L+  +
Sbjct: 69  EN------LPQALVLEPTRELAVQVSREIFLVGRKKRLKVPAVFGGFPIDKQIQTLRQKS 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ DH+R   L +S ++ +V+DEAD MLD+GF D++  IL   PK R   +F
Sbjct: 123 HIVTGTPGRVMDHLRRGSLCLSKVRFLVIDEADLMLDMGFLDEVRQILSLLPKDRSTFLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L      +AV +++  E +           V   ++ NA  NIL      
Sbjct: 183 SATLDRQVRELMGEAVSEAVFISMEDEVKVPPATQQSVYQVLQENKYNAFKNILIKENPD 242

Query: 246 NAIVFCSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + ++FC TR  V+  F K+  + +F    + GE+ Q ER   +   R G  R  IATDVA
Sbjct: 243 SCMIFCGTREMVNVLFQKLRRDRIF-CGMIHGEMEQAERLKHVDAFRRGGFRYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D   + LV++ +  +  E  +HR GRTGR G+ G +V ++ ++  R  +++     
Sbjct: 302 ARGVDFEGISLVVNYDFPTGRETYVHRIGRTGRNGQSGRAVSLVTEDELRMLKKVEEYME 361

Query: 365 VSVVWEPAPSVEAIRERD 382
            ++   P P  +   E++
Sbjct: 362 TTLPVNPLPEPDQAEEKE 379


>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
 gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
          Length = 551

 Score =  213 bits (542), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/345 (34%), Positives = 197/345 (57%), Gaps = 8/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IPQ++ EA +  G+ + T +Q   +   L+ +DV+  AQTGSGKT AF + +   L    
Sbjct: 112 IPQIV-EACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQALWDNP 170

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F       A  +APTRELA Q+ +++E L +  GV  A  +GG+ +  +   L    H
Sbjct: 171 KPF------FACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIALSKRPH 224

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG ++  L+ +V+DEAD +LD+ F   I+ +L S P++RR ++F
Sbjct: 225 VIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRERRTMLF 284

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ VRV + ++    S +    + +  + +D  +V++       
Sbjct: 285 SATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLANEQAGH 344

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVF  T     R + +L    F  + L G+LSQQ R  AL   + G   + +ATDVA+
Sbjct: 345 SIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILVATDVAS 404

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P ++LV++ ++ +N ++ +HR GRT RAGR G SV ++ Q
Sbjct: 405 RGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQ 449


>gi|313682309|ref|YP_004060047.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155169|gb|ADR33847.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 450

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 202/354 (57%), Gaps = 18/354 (5%)

Query: 1   MKIFEN----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  FE     IP  + EAL    +  +TS+Q   L   L++KD +  A TGSGKT+AFGL
Sbjct: 1   MSTFETLALRIP--LKEALKRLEFTQMTSIQSQALPVILQKKDCIAQAATGSGKTLAFGL 58

Query: 57  ALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSV 114
            +        +R +P S    +L + PTRELA QV + +  L ++ G + V    GGV +
Sbjct: 59  GVL-------ERINPKSFGTQSLILCPTRELAEQVAKVIRSLASEIGNIKVLTLCGGVPM 111

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GAHI+VGTPGR+   ++ +  + + ++ VVLDEAD+M+D+GF +DI  IL 
Sbjct: 112 KGQIHSLKHGAHIIVGTPGRVLKLLQMETFDPAQIQTVVLDEADQMIDMGFIEDITSILG 171

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P  R+ L+FSAT   +I T+  ++ KD V V  A  +     I+  A L   +D+  A
Sbjct: 172 FTPPSRQSLLFSATFPESIQTITSDFMKDPVMVT-AEHSLSKPKIEEIAYLC--NDKLPA 228

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I  +L+ HG  N I+FC+T+   +   + L       + L G++ Q +R+ A+   R+  
Sbjct: 229 ISMVLQLHGITNTIIFCNTKVDANALCEDLNRIGVHALTLHGDMEQFDRNEAIIQFRNLS 288

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A + +ATDVA RGID+  L+ +I+ E+    E   HR GRTGRAG+ G+++ ++
Sbjct: 289 APILVATDVAGRGIDIEGLDAIINYEVPIQNERYTHRIGRTGRAGKNGIAITLV 342


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ +++ 
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+ +   F DSI       G E  +++V+    +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 207/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P+ R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPETRQTLLFSATWPDA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 203/371 (54%), Gaps = 6/371 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS  GY   T +Q  ++   L +KD++  +QTGSGKT A+G+ +   L+  N+   
Sbjct: 15  IVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPICE-LVDWNE--- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTRELA+QV  ++  +     +      G    H ++ +L+   H+ VG
Sbjct: 71  --NKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELKQRTHVAVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L++  +  +V+DEADEML++GF + ++ I+ + P  R  ++FSAT  
Sbjct: 129 TPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSDRVTMLFSATFP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             + TL++ Y  D V++ I +     + ID+  + V  SD+   + ++L      + I+F
Sbjct: 189 EDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +V    + LA+  +    + G + Q ER   +   R G+ R  IATDVAARGID+
Sbjct: 249 CRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ +I     RR   +      ++   
Sbjct: 309 TNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEAYIGFAIPQV 368

Query: 371 PAPSVEAIRER 381
            APS EA+  R
Sbjct: 369 KAPSEEAVDLR 379


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    +   ++ + + +I       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDITTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    +   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMKEEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 135/374 (36%), Positives = 205/374 (54%), Gaps = 20/374 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA----STL 62
           +P    + L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL L     +TL
Sbjct: 10  LPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLLQHIDATL 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRD 120
           L             +L + PTRELA QV  EL  L  +     ++ +C GG     +R  
Sbjct: 70  LQTQ----------SLVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDS 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P+ R
Sbjct: 119 LQHAPHIIVATPGRLLDHLQKSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPEDR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   AI  ++   QK+ + + I S +   + I+ +    +   +   +  +L 
Sbjct: 179 QTLLFSATWPDAIAAISGRVQKNPLTIEIDSVDALPA-IEQQFFETSQQGKIPLLQKLLS 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + +VFC+T+         L       ++L G+L Q++R   L    +G ARV +A
Sbjct: 238 QHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           TDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L
Sbjct: 298 TDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIL 356

Query: 360 FREANVSVVWEPAP 373
                + + W   P
Sbjct: 357 SEMLQIKLNWVNTP 370


>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 212/379 (55%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T+VQE  +   L  KD+LVS+QTGSGKT AF       LA   ++
Sbjct: 12  ETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQESV 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   DR    + P  L I+PTRELA QV ++ +  +    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPFAKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA    KD +R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +    +  + RA  
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 370

Query: 359 LFREANVSVV----WEPAP 373
            + EA +SV      EP+P
Sbjct: 371 EYLEARLSVSEIEGLEPSP 389


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 192/345 (55%), Gaps = 13/345 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN----DRF 69
           AL+  G V+   +Q   L   L   D++  A+TG+GKT+ FGL L + ++A      D+ 
Sbjct: 37  ALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLLNRVVAPGEEGFDQL 96

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P A+ I PTRELAVQV ++LE   +   V +    GG +   +   L  G  +VV
Sbjct: 97  PAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYEPQIAALNRGVEVVV 156

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D ++ K L +     +VLDEADEMLDLGF  D+E IL  +P  R+M++FSAT+
Sbjct: 157 GTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQTPAVRQMMLFSATM 216

Query: 190 SPAITTLAKNYQKDAVRV------NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             A+  +A+ Y      +      ++ S  +  + + YRA  +   D+   I  IL+  G
Sbjct: 217 PGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPL---DKVEMIARILQARG 273

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +++F  T+ + ++    L E  F   AL G+L Q  R  AL+  R+G+  V +ATDV
Sbjct: 274 RGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVLVATDV 333

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ ++  VI+ ++  + +  LHR+GRTGRAG KG +V  +
Sbjct: 334 AARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFV 378


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 196/340 (57%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E+GY   + +Q A     +  +D++  AQTG+GKT AF L L   L  +      A
Sbjct: 56  KTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQKD------A 109

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P AL +APTRELA+QV    +   A    + V    GG     +   L+ G  +VVGT
Sbjct: 110 TKPQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGT 169

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+  
Sbjct: 170 PGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPS 229

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y ++   + I ++ ++   I  R + +  S +  A+  +L     +  I+F 
Sbjct: 230 EIRRLSKRYLREPAEITIKTKEKEARRIRQRCITLQNSHKLEALNRVLEAVTGEGVIIFA 289

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A     ++ L      V  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 290 RTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVD 349

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 350 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPR 389


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 201/366 (54%), Gaps = 8/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+++ GY   T +Q   +   L  KD+L  AQTG+GKT +F L + + L     
Sbjct: 21  PKVLS-AVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLTRLEKGRA 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P  L + PTRELA QV            + +A+ IGGVS   + + L+ GA +
Sbjct: 80  R---ARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKKLERGADV 136

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R+ L FSA
Sbjct: 137 LIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTRQTLFFSA 196

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA- 244
           T+ P IT L + +    VRV ++      ++I  R V       D+   + N+++   A 
Sbjct: 197 TMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNLIKAEDAE 256

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R  +A+DV
Sbjct: 257 LKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLRYLVASDV 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  + + R  
Sbjct: 317 AARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYIDAIERLI 376

Query: 364 NVSVVW 369
              + W
Sbjct: 377 GNKIEW 382


>gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1]
 gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 461

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 211/376 (56%), Gaps = 15/376 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPARRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ ++  +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQHRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ +       + W+ 
Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIEDLQKSPLRWD- 370

Query: 372 APSVEAIRERDAQRIL 387
             S+++++ +  + +L
Sbjct: 371 --SLDSLKNKGGEPLL 384


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 194/346 (56%), Gaps = 3/346 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + LS +G+ + T +Q   +   L  +D++  AQTG+GKT AFGL +   L     
Sbjct: 5   PRIL-DRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWHVGT 63

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    SA  AL +APTRELA Q+   L      T + VA+ +GGVS++ + + LQ G  +
Sbjct: 64  KPEDRSA-RALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGTDV 122

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +S  + +VLDEAD+MLD+GF  D+  I    P++R+ +MFSA
Sbjct: 123 LVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMFSA 182

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA+ Y    +RV ++   +    +      +   D+   +  +L  H  + A
Sbjct: 183 TMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEVHFMLQGDKGQHLKKLLGNHREERA 242

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    +  K L    F   ++ G  SQ +R+ AL+  + G  ++ +ATDVAARG
Sbjct: 243 LVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATDVAARG 302

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ID+P +  V + +L + PEN +HR GRT RAG +G ++ F  P  M
Sbjct: 303 IDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEM 348


>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 432

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 189/335 (56%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T++Q   +   L + DV  +AQTG+GKT AFGL +   L   +D      
Sbjct: 15  AIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQRLRKTSD--DKQR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A   L IAPTREL++Q+  +L+      G+ +AV +GG  +  +++ L+ G  IV+ TPG
Sbjct: 73  ALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKILKEGVDIVIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+  KGL++SH++  VLDEAD MLD+GF  +I  I    PK+ + L+FSAT S  +
Sbjct: 133 RVLEHV-DKGLSLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRHQTLLFSATFSDKV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K        +  + +N     I+  A LV    +   +  I+     +  +VF  T
Sbjct: 192 RKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIGSRNFRQVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +AS       L +   +   + G+ +Q  R   L   ++G+ +V +ATD+A+RG+D+ +L
Sbjct: 252 KASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATDIASRGLDIEEL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             VI+ EL S PE+ +HR GRTGRAGR GM++ +I
Sbjct: 312 PFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLI 346


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 191/344 (55%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L + + L     
Sbjct: 13  PRVL-KAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPMITILGKGRA 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 72  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQDKLIDRGVDV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L +SA
Sbjct: 129 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDRDNAIVNILR 240
           T++P I  +   +   AV++ +A +      I+ + + V       + +D+   +  ++R
Sbjct: 189 TMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIR 248

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V    K L +H F    + G+L Q +R   L   RDG   + 
Sbjct: 249 AEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGFRDGSLHLL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG
Sbjct: 309 VASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKG 352


>gi|325274041|ref|ZP_08140194.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324100824|gb|EGB98517.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 504

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 154/505 (30%), Positives = 257/505 (50%), Gaps = 28/505 (5%)

Query: 50  KTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAV 107
           KT AF L + + +            P AL +APTRELA+QV    E  YAK   GV V  
Sbjct: 1   KTAAFALPILNKIDVSK------REPQALILAPTRELALQVATAFET-YAKQMPGVNVVA 53

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  +  + R ++NGA IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF D
Sbjct: 54  VYGGAPMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMD 113

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           D+E I D+ P  R+ ++FSAT+  +I ++A+ + ++   V I S+ +  + ID   ++V 
Sbjct: 114 DLEVIFDAIPATRQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVH 173

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +  A++ +L        I F  T+ +       L    ++  AL+G+++Q +R   +
Sbjct: 174 ADQKIPAVLRLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVI 233

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             ++DGR  + +ATDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ +
Sbjct: 234 DSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLL 293

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVD 405
           +    +R  + + R     V     P+ +A+ +   +++     PL  ++ +     + D
Sbjct: 294 VTPRERRMLQVIERVTGQKVAEARLPNAQAVLDARIKKLTNSLAPLVAEA-EATHGDLFD 352

Query: 406 VLLAK--HDPEKIAAGFLRIHRAG----LCAPEEITPV--SLVSGRDRFRDDSRAFKVGG 457
            L          +A+  LR    G    L A E   P+  S     +R     R+ +   
Sbjct: 353 RLTNDLGCSARALASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERSERPDR 412

Query: 458 GSRDN------FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
           G R+        +G      ++G++    A+ L+  +    G+ R +IG I+V+   + V
Sbjct: 413 GDRERRAPLPLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLV 472

Query: 512 EVSADGVDLLRRTVKLDK--GIQLK 534
           E+  DG++ L   +K  +  G QLK
Sbjct: 473 ELPEDGLEKLLSKLKDTRVAGKQLK 497


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 202/347 (58%), Gaps = 20/347 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  A+  +G+   T +Q  ++   L  E +++  A+TGSGKT +F + L   L+ 
Sbjct: 12  NLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE-LVN 70

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           EN+         A+ + PTRELA+QV  E+E L     + +A   GG +++ + + L+N 
Sbjct: 71  ENNGIE------AIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKN- 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+ ++K  +LDEADE L+ GF  D+E IL++  K +R+L+
Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           FSAT    I  LAK Y  D   +    + + +++I+   V V  ++R  A+  +L+   +
Sbjct: 184 FSATXPREILNLAKKYXGDYSFI----KAKINANIEQSYVEVNENERFEALCRLLKNKEF 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VFC T+         L +  F+  A+ G+LSQ +R   +++ +  + R+ IAT
Sbjct: 240 YG----LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DV +RGID+ DL  VI+  L  NPE+  HR GRTGRAG+KG ++ +I
Sbjct: 296 DVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISII 342


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score =  213 bits (541), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ +++ 
Sbjct: 132 GAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+ +   F DSI       G E  +++V+    +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 192/342 (56%), Gaps = 7/342 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++   +  E+          AL
Sbjct: 48  GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ------AL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V +  CIGG SV  ++R L+NG H+VVGTPGR+ D 
Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENGIHVVVGTPGRVGDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L+ S +K  VLDEADEML  GF+D I  +  S P+  ++++ SAT+   +  +  
Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMPSEVLDVTD 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ +    F V  L G++ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           + +L SN EN +HR GR+GR GRKG+++  + +N  R+ + +
Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI 383


>gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 452

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 200/366 (54%), Gaps = 14/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + E L   GY  LT +QE  L   L  KDV+  A+TGSGKT AFG+ L + L  +
Sbjct: 8   NIDEKLKENLISLGYETLTKIQEESLPLILEGKDVIAKAKTGSGKTAAFGIGLLNKL--D 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +F        L + PTRELA QV  EL  +  Y     ++ +C GGV   R+   L +
Sbjct: 66  VKKFKTQ----CLVLCPTRELADQVAVELRRIARYKHNIKILTLC-GGVPSSRQTHSLTH 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAH++VGTPGR+  H+R + LN   +  +VLDEAD MLD+GF +DIE ++   PK+R+ L
Sbjct: 121 GAHVIVGTPGRVLFHLREQNLNPESIDTLVLDEADRMLDMGFLEDIEKVISFIPKQRQTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  L+K    D +     S +  H++   R   +  S +D+ ++ +   + 
Sbjct: 181 LFSATYDENIKELSKGILVDPI---FKSVDTVHTESTIREEFIKTSRKDSVLLKLFSTYK 237

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + I+FC+T+         L +  +  + L  +  Q+ R   + +  +    + IATDV
Sbjct: 238 PSSVIIFCNTKIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYPILIATDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+E+VI+ +++++     HR GRT RAG+ G+++ +     + + E L  + 
Sbjct: 298 ASRGLDIDDVEMVINYDMANDTNVYTHRIGRTARAGKSGVALTLYNDYDEDKVEEL--QV 355

Query: 364 NVSVVW 369
           N  +V+
Sbjct: 356 NKELVY 361


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 211/379 (55%), Gaps = 30/379 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   ++L E GY   T +QE  +   +  KD++  AQTG+GKT AFG+ +       
Sbjct: 12  NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV------ 65

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +P    + AL + PTRELA+QV +E++ L     V      GG S+  +   L+ G
Sbjct: 66  -EKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124

Query: 125 AHIVV-GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           + +VV GTPGR+ D +    LN+ ++K  VLDEAD ML++GF DDIE I+   P+ R++L
Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQIL 184

Query: 184 MFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +FSAT+   I  LA+     NY+   V+ +  +  +    I YR   V   D+   +  +
Sbjct: 185 LFSATMPKEILELAEEFLNENYETIKVKPDEVTVEK-IKQIIYR---VNPRDKFKKLTEV 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  + A+  I+F  T+       + L E  F   A+ G+ SQ++R   L   R G+ ++ 
Sbjct: 241 LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QN 351
           +ATDVAARG+D+  ++LVI+  L  + E+ +HR GRTGRAGR+G ++ ++        QN
Sbjct: 301 VATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQN 360

Query: 352 MQRRAERLFREANVSVVWE 370
           +Q++      +AN+ V+ E
Sbjct: 361 IQKKT-----KANIEVINE 374


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEIEAYIGFEIPKAYAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 129/348 (37%), Positives = 191/348 (54%), Gaps = 16/348 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I   I  AL   GY N T+VQ   +   +  +D+LVSAQTGSGKT AF L  A T L+E
Sbjct: 7   GIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAF-LLPALTKLSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118
               +    P  L + PTRELA QV       G++L W+        A  +GG S   + 
Sbjct: 66  RS-TAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMR------TACLVGGSSFGYQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGRL DH+R   ++ S L+ +VLDEAD MLD+GF DDIE I+ ++P+
Sbjct: 119 RALSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPE 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
            R+ ++FSAT+   +  +A+   +D  R+ IA        I+   +    L+ +   +  
Sbjct: 179 TRQTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLLYADDLNHKHRLLDY 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++F +T+A        L++  +    L G++ Q  R+  L  +R GR +V
Sbjct: 239 ILKESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARGID+P +  V++ +L    E+ +HR GRTGRAGR G ++
Sbjct: 299 LVATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAI 346


>gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 481

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I    +R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 203/387 (52%), Gaps = 35/387 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + +   
Sbjct: 41  IARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQPEPQR 100

Query: 71  P-----------------ASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVA 106
           P                  + P  L + PTRELA+QV       GR L        +V A
Sbjct: 101 PRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRR------IVCA 154

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF 
Sbjct: 155 SILGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFA 214

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           DDIE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R    
Sbjct: 215 DDIEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFT 274

Query: 227 A-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             LS +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+ 
Sbjct: 275 DDLSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNR 334

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 335 TLTALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAI 394

Query: 346 FVIPQN---MQRRAERLF-REANVSVV 368
            ++        RR ER   R  + +VV
Sbjct: 395 NLVNHGDTFQWRRIERFVDRRIDATVV 421


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 214/397 (53%), Gaps = 27/397 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +
Sbjct: 14  LTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV-------EKIN 66

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+V
Sbjct: 67  PESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DHI  + + +  +  VVLDEADEML++GF +DIE IL + P + + L+FSAT+
Sbjct: 127 GTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATM 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIV
Sbjct: 187 PAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T+ L    +    + G+L+Q +R  AL+  + G   V +ATDVAARG+D
Sbjct: 247 FGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           +  +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R       
Sbjct: 307 ISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR------- 354

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                ++E   +R   R ++ P   ++I+G ++  VD
Sbjct: 355 -----AIEQTTKRKMDR-MKAPTLDEAIEGQQQVTVD 385


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 194/339 (57%), Gaps = 11/339 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++ + +   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ L   L  +  
Sbjct: 10  PQML-QTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLLHHLNVKKF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +EL  L   +  + + +  GG S  R+   L + AH
Sbjct: 69  RVQ------SLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGSLAHQAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+  H+  + L +S+L  +V DEAD MLD+GF ++IE +L   PK+R+ L+FS
Sbjct: 123 IIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  ++K  Q +A+ V  A++  Q+  +         +D+ + ++ IL  +  +N
Sbjct: 183 ATYDDEILQISKRIQNNALHVKTAAQEVQNKIVQE---FYETNDKVDTLIKILANYKPEN 239

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+       + L ++    +A+ G+L Q ER++ L    +    V +ATDVAAR
Sbjct: 240 VIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVLVATDVAAR 299

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+ DL +V++ +L  + E   HR GRTGRAG +G++V
Sbjct: 300 GLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAV 338


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 159/536 (29%), Positives = 259/536 (48%), Gaps = 46/536 (8%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L   N  
Sbjct: 60  QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TNNKE 118

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +       L + PTRELA QV    +   +++     V I GG     +   L+    +
Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I H+  +VLDEADEML++GF +DIE+I+D  P+ ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  + + V    + +A+  IL  +  +  
Sbjct: 235 TMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L       +
Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRTKI 413

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAAGFLR 422
                PS + I E+  ++++ D +   S+  DE +     ++DVL   +  EK +     
Sbjct: 414 EEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKALIIDVL--DNLKEKYSMDDSN 470

Query: 423 IHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGS-----------------RDN 462
           I  A          ++LV G   F    DDS   K                      R+N
Sbjct: 471 IAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNN 521

Query: 463 FKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           ++  S+  +  + G         ++  +C S+ IN +SIG I++  D + V++  D
Sbjct: 522 YQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPRD 577


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T +QE  +   L  +DVL  AQTG+GKT AF L L   L +   R   A
Sbjct: 15  QAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVERLASGRAR---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ +APTRELA QV          T +   + IGGVS+  +   L  G  +++ TP
Sbjct: 72  RMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQVAALNKGVDVLIATP 131

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L ++ ++ +V+DEAD MLD+GF  DIE I   +P +R+ L FSAT+ P
Sbjct: 132 GRLLDLFERGKML-LTGVEIMVVDEADRMLDMGFIPDIERIFKLTPPRRQTLFFSATMPP 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248
            IT L   + KD  R+  +        I    V +  SD   +  A+  ++     +N I
Sbjct: 191 EITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAALRALMSRTDVRNGI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ ++ V    K L  H F   A+ G+L Q  R+  L   R G  ++ +A+DVAARG+
Sbjct: 251 VFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGALKILVASDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++S + ++ +HR GRTGRAG+ G +  ++
Sbjct: 311 DIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIV 350


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 203/365 (55%), Gaps = 12/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   LR +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ +   +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 EQLAADFMRKPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ +       + W+ 
Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIEALQKSPLRWDQ 371

Query: 372 APSVE 376
             S++
Sbjct: 372 LDSLK 376


>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 542

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 146/396 (36%), Positives = 212/396 (53%), Gaps = 41/396 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----------ALASTL 62
           AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L           A AS  
Sbjct: 62  ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKAQASQP 121

Query: 63  L-------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                   A   R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 122 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 175

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +D
Sbjct: 176 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 235

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I      V  
Sbjct: 236 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDD 295

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 296 RDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 355

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 356 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 415

Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374
           +    Q   +R ER  R     NV   +EP   APS
Sbjct: 416 VHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 451


>gi|88803174|ref|ZP_01118700.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
 gi|88780740|gb|EAR11919.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
          Length = 373

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 189/348 (54%), Gaps = 12/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +++ E G    T +QE  +   L+ K D +  AQTG+GKT AFGL +   +   ++    
Sbjct: 15  KSIQELGISTPTEIQEQTIPILLKSKTDFIGLAQTGTGKTAAFGLPILHHIDTSSEHIQ- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 L ++PTREL  Q+ ++L     Y +  + +    GG  + R+  +L+   H+VV
Sbjct: 74  -----TLVLSPTRELVQQIKKQLFKFTKYNEEKIFIEAVFGGEKIDRQIGNLKRTTHVVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSAT 188
            TPGRL D I    ++ISH+K VVLDEADEML +GF+ D+  IL  SS   R   +FSAT
Sbjct: 129 ATPGRLIDLIERGDIDISHVKTVVLDEADEMLSMGFKQDLNRILKFSSQSDRNTWLFSAT 188

Query: 189 ISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +   I  + K Y   +A RV +      +++I ++ V   L  + N I+  L   G +  
Sbjct: 189 MPEEIKRIIKTYMDSNAPRVEVNKNALVNANIRHQFVKTTLKTKANDIITFLEKRGTQRG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+A       +L E  F   AL G++ Q+ER   ++  +    +  ++TDV+ARG
Sbjct: 249 IIFCRTKAGAQNLANLLIEEGFSTAALEGDMQQKERDKVMRAFKKENLQYLVSTDVSARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+  LE VIH +L    E   HRSGRT RAG+ G S+ F++P  +++
Sbjct: 309 IDVSGLEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPNELEK 356


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E+E  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P+ ++ ++
Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y K+   + I S     ++I  R +      + +A+ +++     
Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + +  IATDVA
Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++ FV P++
Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKD 349


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 191/340 (56%), Gaps = 7/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+   Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +    LAE +   
Sbjct: 13  IRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPICE--LAEWEE-- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTRELA Q+  ++  +     +      G  S  +++ +L+  +H+V G
Sbjct: 69  --NKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQKSHVVAG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK R  ++FSAT+ 
Sbjct: 127 TPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTMLFSATLP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y KD   + + +E     DI++        D+ + + ++L      + I+F
Sbjct: 187 DDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENPDSCIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V + T  L    +    + G + Q++R + +   + G  R  IATDVAARGID+
Sbjct: 247 CRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVAARGIDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            ++ LVI+ ++    E+ +HR+GRTGRAG +G ++ FV P
Sbjct: 307 ENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTP 346


>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 411

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71
           L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA     SP   
Sbjct: 16  LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71

Query: 72  --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             A  P+ AL + PTRELAVQV +        T + V +  GGVS+  +      G  ++
Sbjct: 72  LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  AI +L+K   +D   + +A  N   ++I+ + V    +DR   +V +++R       
Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDVAARG
Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q 
Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score =  213 bits (541), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
          Length = 638

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 19  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  +VVG
Sbjct: 72  VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+ 
Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+   L       AI+F
Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++   
Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370

Query: 371 PAPSVEAIRER 381
             P+ E + +R
Sbjct: 371 ELPNAELLGQR 381


>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 588

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 204/366 (55%), Gaps = 12/366 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           EA+ + G+   + VQ+A + P L E   D++  AQTG+GKT AFG  L   L+    R +
Sbjct: 22  EAIDDLGFERPSEVQQAAI-PVLLEAPTDMVALAQTGTGKTAAFGFPLLQ-LIDPTQRMT 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128
                  L +APTREL +Q+  EL+  YAK    V +    GG S+  + R L+ GAHI+
Sbjct: 80  QG-----LILAPTRELCLQIASELKQ-YAKYMPQVHIVAIYGGASIEEQARSLKKGAHII 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D +R +  +I+ +   VLDEADEML++GF +DI  IL  +P  +   +FSAT
Sbjct: 134 VATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSETPDDKNTWLFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +AK +      + I  +N+  +++ +   +V    R  A+  +   + +  ++
Sbjct: 194 MPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQRYEALKRLADANPSIFSV 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+       + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGI
Sbjct: 254 VFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQMLVATDVAARGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++  +R + + +    +  
Sbjct: 314 DVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRIKTIEKIIQKTFE 373

Query: 369 WEPAPS 374
           ++  PS
Sbjct: 374 YKSIPS 379


>gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
 gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
          Length = 457

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/381 (36%), Positives = 209/381 (54%), Gaps = 12/381 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A  
Sbjct: 10  LPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQHIDAA- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
             F   S    L + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+ 
Sbjct: 69  -LFQTQS----LVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHA 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  ++   Q++ + + I + +   + I+ +    +   +   +  +L  H  
Sbjct: 183 FSATWPEAIAAISGRVQQNPLTIEIDTVDALPA-IEQQFFETSSHGKIPLLQKLLSQHQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+         L       ++L G+L Q++R   L    +G ARV +ATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L    
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANILSEML 360

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            + + W  AP+  +I   +A+
Sbjct: 361 QLKLNWLTAPANGSILPLEAE 381


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSEQCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
 gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
          Length = 513

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/330 (38%), Positives = 184/330 (55%), Gaps = 12/330 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P    I EAL  RG    T +Q A L   L  KD++  A+TG+GKT+AF L +A  
Sbjct: 3   FKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A   R      P AL + PTRELA+QV  E+  L     VV     GG    +++ +L
Sbjct: 63  LEASRQR---GRKPRALVLTPTRELALQVASEVAALAPHLKVV--PVYGGTGYGKQKEEL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +VV TPGR  D++R   L++S ++  VLDEADEML +GF +++E IL ++P  R+
Sbjct: 118 QKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLSMGFEEEVEAILAATPPSRQ 177

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240
            L+FSAT+      LA+ Y K  V +N+  E      + Y+   ++A +DR   + ++L 
Sbjct: 178 TLLFSATLPTWARRLAERYMKSPVVINVVKEE----GVTYQEEAILAPTDRLALLSDLLY 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K AIVF  T+A        L        A+ G+LSQ +R   ++  R+G  RV +A
Sbjct: 234 VKAPKRAIVFTKTKAETEEVATGLLRLGHAARAIHGDLSQADRERVMRAFREGEVRVLVA 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330
           TDVAARG+D+P+++LV+H  L   PE   H
Sbjct: 294 TDVAARGLDIPEVDLVVHYRLPDKPETYQH 323


>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 585

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 197/360 (54%), Gaps = 14/360 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+     ++  
Sbjct: 43  NVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +D    + +   AP AL I PTRELAVQV ++LE    K    +A   GG +   +   L
Sbjct: 103 DDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYEPQVDSL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  IVVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++  +P  R+
Sbjct: 163 QKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAGTPAVRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235
            L+FSAT+   +  +A+ Y      +  A  +      R    + YRA  +   D+   +
Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKIEVV 279

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+ + 
Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V FV   +M R
Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 482

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 189/344 (54%), Gaps = 7/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +AL+ +G V+   +QE  +   L  +D++  A+TG+GKT  FG+ +   L    
Sbjct: 9   VDQDIVDALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPVVQRL---- 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELAVQV  +++ L +     V    GG +   +   L+ GA 
Sbjct: 65  -GLNPEPGVKALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQIDQLKAGAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL D    + L++S+   VVLDEAD+MLDLGF  DIE I    P  R   +FS
Sbjct: 124 IVVGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPPVRHTQLFS 183

Query: 187 ATISPAITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   I  LA+ +  + +  R N   E    ++I +        D+D  I  IL+  G 
Sbjct: 184 ATMPGPIVALARRFMSNPIHMRANDPDEGLTQANIKHLVYRAHSLDKDEVIARILQSEGR 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F  T+ +  +    L +  F   A+ G++SQ+ R  ++   + G+  V IATDVA
Sbjct: 244 EKAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKDVLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V  +
Sbjct: 304 ARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFV 347


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/380 (35%), Positives = 210/380 (55%), Gaps = 8/380 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  + + I   L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 1   MTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R    +    L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 61  IEKLLADERRPDNRTT-RTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQ 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL D I  + ++++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 LQLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           KR+ ++FSAT+  AI  LA +Y  D V+V +    +    ++ Y   +   +D+   +  
Sbjct: 180 KRQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    AIVF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 240 SLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--R 354
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++ F  P   +  R
Sbjct: 300 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 359

Query: 355 RAERLFREANVSVVWEPAPS 374
             ERL    +++V    AP+
Sbjct: 360 DIERLM-GIDIAVASGEAPA 378


>gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
 gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
          Length = 586

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 162/541 (29%), Positives = 278/541 (51%), Gaps = 54/541 (9%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           M  FE++   P+++  A+ + G+ + + VQE  +   L E  D++  AQTG+GKT AFG 
Sbjct: 1   MTTFESLGLSPEIL-RAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGF 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSV 114
            L   +   + +         L ++PTREL +Q+  EL+    Y +    VAV  GG S+
Sbjct: 60  PLIQNIDLNSKK------TQGLILSPTRELCMQITNELKQYSKYYQNLSTVAVY-GGASI 112

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R ++ GA I+V TPGR+ D I+   ++IS++   +LDEADEML++GF +DI+ IL 
Sbjct: 113 TDQARQIKKGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            S  ++   +FSAT+   ++ +AK + K+   + +  +N     + +   +V   DR +A
Sbjct: 173 HSSDQKNTWLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSHEYFIVGGRDRYSA 232

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++  +    A+VFC T+    +  + L E  +   AL G+LSQ +R   +   R  +
Sbjct: 233 VKRVVDANPDIYAVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQ 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG++G S+ ++ ++  R
Sbjct: 293 IQMLVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVR 352

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD----AQRILQ-------DPLFLDSIQGDEKKM 403
           + +++ R        E  PS + I +R     A  I +       DP F+ +++ + ++ 
Sbjct: 353 KIKQVERMIGQKFTQEELPSGDEICKRQLFHLADEIKKTEINHAIDP-FIPNLEAEFEE- 410

Query: 404 VDVLLAKHDPEK--IAAGFLRIHRAGLCAPEEI---TPVSLVSGRDRFRDDSRAFKVGGG 458
               L+K D  K   +  F R H     AP+ +      S  SG+D + D++R F +  G
Sbjct: 411 ----LSKEDIIKKFFSVEFSRFHNYYKNAPKVVQHSADESYSSGKD-YGDETRFF-INIG 464

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            +D F    W S+    K + E             ++R  +  + V+   +F  V+ D V
Sbjct: 465 EKDGF---DWMSMKDFLKDQLE-------------LDRDGVAKVDVKNTFSFFNVATDDV 508

Query: 519 D 519
           +
Sbjct: 509 E 509


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/497 (31%), Positives = 254/497 (51%), Gaps = 34/497 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+++   Q + +A+S+ G+   T +Q   +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    D      A   L IAPTRELAVQV  EL  +     V V    GG  + R+ 
Sbjct: 61  IEKVDVNVD------AIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  + L +  +  V+LDEADEML++GF +DIE IL + P+
Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLEVQEKRKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP------QN 351
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++ FV P       N
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLL 408
           ++R  +R              P+++   E   QRI  D L     QG+    K++ + LL
Sbjct: 355 IERTTKRKMERLT-------PPTLDEAME-GQQRIAADKLTESVTQGNLSYYKQLAEELL 406

Query: 409 AKHDPEKIAAGFLRIH-RAGLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +HD   + A  +++  +    +P ++T  P  +  G     D ++    GG SR N K 
Sbjct: 407 EEHDSVSLVAAAIKLFTKEPNESPIQLTAEPPVIAKG-----DKNKRGNGGGRSRSNSKN 461

Query: 466 SSWFSLSVGSKQKAEAR 482
            S  +    SK+  + R
Sbjct: 462 YSQQNRRGNSKRFGDKR 478


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E+GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L     R    
Sbjct: 96  KTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLQDHGSR---- 151

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV      +      + V    GG     +   L+ G  +VVGT
Sbjct: 152 --PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVDVVVGT 209

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L+ S L+ +VLDEADEML +GF DD+E+IL+  PK+R+M++FSAT+  
Sbjct: 210 PGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQMVLFSATMPS 269

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y  +   + I S +++   I  R + +  S +  A+  +L     +  I+F 
Sbjct: 270 EIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEGVIIFA 329

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L      V  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 330 RTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAARGLDVD 389

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 390 RISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPR 429


>gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908]
 gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 469

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/336 (36%), Positives = 193/336 (57%), Gaps = 8/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  
Sbjct: 21  PELL-DNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKRF 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GAH
Sbjct: 80  RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+  + L++  +  +VLDEAD ML++GF  D+++I+   P++R+ L+FS
Sbjct: 134 IIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+    + V V + S +  ++   +   L +  DR  A+  +L  H  ++
Sbjct: 194 ATFPKQIQKIAEEIMYEPVMVKVTSTHDSNTIDQHFYELESNKDRQKALRLLLLQHRPES 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAAR
Sbjct: 254 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  L++V++ E + + E  +HR GRTGRAG KG
Sbjct: 314 GLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKG 349


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 16/363 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L + ++
Sbjct: 51  FDVRPEIV-QALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLNAVV 109

Query: 64  AEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           A      D       P AL + PTRELAVQV  +L    A+  V V    GG +   +  
Sbjct: 110 APGEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQID 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +VVGTPGR+ D ++ + L+++ ++ VVLDEADEMLDLGF  D+E +L ++P  
Sbjct: 170 ALNKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAATPAS 229

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-------DIDYRAVLVALSDRD 232
           R  ++FSAT+  A+  +A+ Y      +  A  +   S        + YRA  +   D+ 
Sbjct: 230 RHTMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHAL---DKV 286

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L+ +G    IVF  T+ + ++    L E  F   AL G+L Q  R  AL+  R 
Sbjct: 287 ELLARMLQANGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRH 346

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G+  V +ATDVAARGID+ D+  V++ +   + +  LHR+GRTGRAG KG +V FV   +
Sbjct: 347 GKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDD 406

Query: 352 MQR 354
           M R
Sbjct: 407 MPR 409


>gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 411

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71
           L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA     SP   
Sbjct: 16  LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71

Query: 72  --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             A  P+ AL + PTRELAVQV +        T + V +  GGVS+  +      G  ++
Sbjct: 72  LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  AI +L+K   +D   + +A  N   ++I+ + V    +DR   +V +++R       
Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDVAARG
Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q 
Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354


>gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
 gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
          Length = 481

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 198/365 (54%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   ++  R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 412

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71
           L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA     SP   
Sbjct: 16  LASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71

Query: 72  --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             A  P+ AL + PTRELAVQV +        T + V +  GGVS+  +      G  ++
Sbjct: 72  LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  AI +L+K   +D   + +A  N   ++I+ + V    +DR   +V +++R       
Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDVAARG
Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q 
Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQE 354


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 42  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 101

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 102 R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 156

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 157 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 216

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 217 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 276

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 277 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 336

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 337 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 379


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 12/343 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   + P L  +DVL  AQTG+GKT +F L + + L +   R   A 
Sbjct: 16  AIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMVTMLSSGRAR---AR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    +     T +  A+ IGGVS   + + +  G  +++ TPG
Sbjct: 73  MPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQDKLIDRGVDVLIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P I
Sbjct: 133 RLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPFTRQTLFFSATMAPEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILRYHG--A 244
             +   +     R+ +A +      I  + + +    RD +       +  I++  G   
Sbjct: 193 ERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAKRELLRAIIKSEGEAC 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            NAI+FC+ +  V    K L  H F    + G+L Q  R+  L   RDG  ++ IA+DVA
Sbjct: 253 TNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDAFRDGSLQLLIASDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+D+P +  V + +L S+ E+ +HR GRTGRAGR G +  +
Sbjct: 313 ARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSI 355


>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
 gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
 gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
          Length = 638

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 10/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L   +        P 
Sbjct: 19  ESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLHNI-------DPT 71

Query: 73  -SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             AP  L +APTRELAVQV   + ++     G+ V    GG     + R L+ G  +VVG
Sbjct: 72  VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQLRALRQGPQVVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P   +  +FSAT+ 
Sbjct: 132 TPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  + K + KD   V I S      DI  ++   A   + +A+   L       AI+F
Sbjct: 192 EAIRRITKRFMKDPQEVRIQSSLTTRPDIS-QSYWTAYGRKTDALTRFLEAEDFDAAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+
Sbjct: 251 VRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++   
Sbjct: 311 ERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEV 370

Query: 371 PAPSVEAIRER 381
             P+ E + +R
Sbjct: 371 ELPNAELLGQR 381


>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 479

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 191/344 (55%), Gaps = 7/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL     V   ++QE  L+  L   D++  A+TG+GKT+AFG+ +    +A  D   
Sbjct: 5   ICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPKDPDY 64

Query: 71  ---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P AL +APTRELA+QV  +L    A  G+ V    GGV    +   LQ G  I
Sbjct: 65  AELPQGKPQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQEGVDI 124

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D    + L+ISH+ A+VLDEADEMLDLGF  D+E IL  +P+ R+ ++FSA
Sbjct: 125 VVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTMLFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGA 244
           T+  AI  LA+ + +  + +  A  + +++ +   A  +  +   D+   I  +L+   A
Sbjct: 185 TMPAAIVALARTHMRHPMNIR-AESSYENATVPATAQFIYQAHDLDKPEIIGRVLQAEDA 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R    LAE  F    L G+++Q  R  AL   R+ + RV +ATDVA
Sbjct: 244 GKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+     + +  +HR GRTGRAG  G+++  +
Sbjct: 304 ARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFV 347


>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 490

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 192/340 (56%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA     Y   T +QE  +   L+ +D++  A+TGSGKT AF L +   LL   D+  P 
Sbjct: 78  EACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL---DKPQPL 134

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+G+  E L +   +  AV +GG+ +  +   L    HI+V TP
Sbjct: 135 ---FGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIIVATP 191

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +++DEAD +LD+ F   I+ IL   P++RR  +FSAT+S 
Sbjct: 192 GRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTYLFSATLSS 251

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I +L +   +D VRV+I+S   Q  S +    + +    +D  +V ++  H  K+ IVF
Sbjct: 252 KIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQKDTYLVYLVNEHTGKSTIVF 311

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 312 TRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDILVATDVAARGLDI 371

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ ++  + +  +HR GRT RAG+ G+++ ++ Q
Sbjct: 372 PKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQ 411


>gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1]
          Length = 461

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 12/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 21  LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 77

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 78  ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 135 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ ++  +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 195 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 252 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ +       + W+ 
Sbjct: 312 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQKSPLRWDQ 371

Query: 372 APSVE 376
             S++
Sbjct: 372 LDSLK 376


>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 564

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 198/360 (55%), Gaps = 14/360 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+     ++  
Sbjct: 43  NVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVVGR 102

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +   +   L
Sbjct: 103 DDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYEPQVEAL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  +VVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++ ++P  R+
Sbjct: 163 KNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAATPAVRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235
            L+FSAT+   +  +A+ Y      +  A  +      R    + YRA  +   D+   +
Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSM---DKIEVV 279

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+ + 
Sbjct: 280 ARILQAKGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V FV   +M R
Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 224/426 (52%), Gaps = 10/426 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++++  G+   + +Q+ ++   +  +DV+  A TG+GKT AFGL          ++  
Sbjct: 25  IMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPAL-------NKMH 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L I PTRELA QV  E+       GV      GG S +R+   ++ GA +++ 
Sbjct: 78  LKGGIETLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDLIERGAQVIIA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L       V+LDEADEMLD+GF DDI  I    P +R+ L+FSAT+ 
Sbjct: 138 TPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTERQTLLFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+    +    +I      ++DI  +  ++  S+RD+AI+ ++    AK  +VF
Sbjct: 198 APIKQLAERILVNPFFASITKSETTNTDITQQYYVIEESERDDAIIRLMDSEDAKKTVVF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V R + VL+   +    L G++ Q++R + ++ ++     V IATDVAARG+ +
Sbjct: 258 CRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIATDVAARGLHI 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  V +  +  +PE+ +HR GRTGRAG+KG+++ ++     +  +R+  +   ++   
Sbjct: 318 DDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIRAKVGTTMEHA 377

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--HRAGL 428
             PS   ++E    R++++ +    +  +  K++D+L   +D E+IA   + +   R  +
Sbjct: 378 YIPSKLDVKEAQVSRLVRE-IEKQHVYDEAHKVLDLLKQDYDQEQIAYKLISVLMERNTV 436

Query: 429 CAPEEI 434
             P  I
Sbjct: 437 QGPNNI 442


>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 196/350 (56%), Gaps = 10/350 (2%)

Query: 2   KIFENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  +P   G    L + GY+ +T +Q   L   L   D++  A+TGSGKT AF L L 
Sbjct: 29  RTFNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118
           + L     RF    A  A+ + PTRELA QV +E+  L  ++  + +    GG ++  + 
Sbjct: 89  TRL--NPRRF----AIQAMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQI 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHIVVGTPGR+ DH+    L +S L  +VLDEAD MLD+GF D + +++   PK
Sbjct: 143 ASLEHGAHIVVGTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPK 202

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT    +  LA+ + +   +V +  E  + S I  R   V+  +R  A+  +
Sbjct: 203 DRQTLMFSATYPDGVMRLARQFMRQPQQVKL-EEQHEESKIRQRFYEVSNEERLAAVGTL 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR++   + + FC+T+       +VL       + L+G++ Q++R   L    +    V 
Sbjct: 262 LRHYRPVSTLAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRAG  G ++ ++
Sbjct: 322 VATDVAARGLDITQLEAVINVDVTPDPEVHVHRIGRTGRAGEDGWALSLV 371


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/514 (28%), Positives = 252/514 (49%), Gaps = 42/514 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +Q + +   L  +DV   AQTG+GKT AFG+          +R    S
Sbjct: 19  AIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAI-------ERVDTGS 71

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L ++PTRELA+Q   E   L     G+ +    GG  + R+ R LQ G  IVVGT
Sbjct: 72  RETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQRGVQIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L+   +K VVLDEAD+MLD+GFR+DIE ILD +P+ R+ ++FSAT+  
Sbjct: 132 PGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTILFSATLPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  ++K +QK+   +++A +      I+   + V   DR   +  +L  +     ++F 
Sbjct: 192 PILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLDMYDPDLTLIFS 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V   T  L    +    L G++ Q  R   +   R G   + +ATDVAARGID+ 
Sbjct: 252 NTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVAARGIDVE 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D++LVI+ ++  + E  +HR GRT RAGR G +V  +      +   +     + +   P
Sbjct: 312 DVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQNYTKIKIARIP 371

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAK-HDPEKIAAGFLRIHRAG 427
            P+   + E   ++++ D +     +G+  +   +V+ ++A+ +   ++AA  L++   G
Sbjct: 372 LPTQGDVEESRTRKLI-DRVHQTIDEGNLDQYANLVERIIAEDYTSLEVAAALLKLELGG 430

Query: 428 L--CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           +    P++I P                           +G +   + VG + +   + ++
Sbjct: 431 VGQGQPQDIRPA--------------------------QGQALLRIPVGREHQIRPKDIV 464

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
             L   +GI   +IGAI +    + V+V  D  +
Sbjct: 465 GALAGETGIPGSAIGAINIYDTYSTVDVPLDAAE 498


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 211/380 (55%), Gaps = 11/380 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+   T +Q+  +   L  KDV+  AQTG+GKT AFG+ L + + + N      
Sbjct: 15  QAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPLVNRIDSSN------ 68

Query: 73  SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             PL   L +APTRELA QV + L       GV   V  GG    ++ R L+   HI+V 
Sbjct: 69  --PLVQGLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQIRSLKQRPHIIVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189
           TPGRL DH+R K + +  ++ VVLDEADEML++GF +DIE IL  +P++ R+ L+FSAT+
Sbjct: 127 TPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQETRQTLLFSATM 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + +LA  + K+  R+ + ++     +I  + + V   ++ + +  ++       +IV
Sbjct: 187 PKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCRLIDLETPDLSIV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V    + L +  ++   L G+L+Q +R++ L+  ++G   V +ATDVAARG+D
Sbjct: 247 FGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDVLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V + +L  +PE+ +HR GRTGRAGR G+++ +  +  +   + +   +   +  
Sbjct: 307 ISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVKLIESVSKRRMTQ 366

Query: 370 EPAPSVEAIRERDAQRILQD 389
            P P+ E   E   Q  L +
Sbjct: 367 RPKPTYEEALEGQKQSTLNE 386


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   ++R S      AL + PTRELA+Q+G         TG+  AV  GGV    +  +L
Sbjct: 63  LYKTDNRKSIK----ALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDEL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    +N+  L+  VLDEAD MLD+GF  DI  IL   P KR+
Sbjct: 119 KRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +      +V +   +     I      V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  + L++   +  A+ G  SQ  R  AL   ++   RV IAT
Sbjct: 239 PAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 342


>gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans
           CH34]
 gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
           metallidurans CH34]
          Length = 467

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 141/406 (34%), Positives = 209/406 (51%), Gaps = 19/406 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L + GY  +T +Q A L   L   D++  A+TGSGKT AF L+L   
Sbjct: 9   FATLPLSAAMQATLVQLGYDAMTPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLLH- 67

Query: 62  LLAENDRFSPASAPL---ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117
                 R  P   PL   AL + PTRELA QV +E+  L  A+  V V    GG  +  +
Sbjct: 68  ------RLDPR--PLDVQALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L +GAH+VVGTPGR+ DH+    LNI  +  +VLDEAD MLD+GF DDI FI   +P
Sbjct: 120 VESLVHGAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L+FSAT   AI  LA  + +    V +  E    + I  R   V   DR NA+  
Sbjct: 180 KDRQTLLFSATYPAAIDKLAHRFLRQPKTVKV-EEAHDAATITQRFYEVEEGDRLNAVGR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L +      + FC+T+A       +L    +  + L G+L Q++R   L    +    V
Sbjct: 239 LLDHFRPATTLAFCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRAG  G +  ++  +   R  
Sbjct: 299 LVATDVAARGLDIAQLEAVINVDVTPDPEVHVHRVGRTGRAGEAGSAFSLVSLDEMGRVG 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            + +       W    +++ ++     R+L   + L  + G ++K+
Sbjct: 359 NIEQHQGGEFEWH---ALDELKPSGGGRLLPPMVTLQMLGGRKEKI 401


>gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
 gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
          Length = 537

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/396 (36%), Positives = 211/396 (53%), Gaps = 41/396 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LASTLL--- 63
           AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L        L  T     
Sbjct: 62  ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKTQAGQP 121

Query: 64  --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                   A   R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 122 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 175

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +D
Sbjct: 176 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 235

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I      V  
Sbjct: 236 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 295

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 296 RDHKDRLLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTI 355

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 356 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 415

Query: 348 I---PQNMQRRAERLFRE---ANVSVVWEP---APS 374
           +    Q   +R ER  R     NV   +EP   APS
Sbjct: 416 VHHAEQGALKRIERFVRTPLAVNVVEGFEPRKSAPS 451


>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
          Length = 435

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/356 (37%), Positives = 193/356 (54%), Gaps = 8/356 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF       AL + P
Sbjct: 1   MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ----ALVLCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 175 RHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F V+AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   ++A
Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 200/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+   +P  +   L+  G    T +Q   +   L   DVL  AQTG+GKT+AFGL L
Sbjct: 1   MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L+ E  + +P +   +L +APTRELA Q+   L  L   + + + + +GG S++ + 
Sbjct: 61  ITRLMEEPGKPAPKTI-RSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+V TPGRL D I  + + +   + +VLDE D+MLDLGF   +  I      
Sbjct: 120 KRLEQGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ +MFSAT+   +  LA +Y ++  RV ++   +    +      +A + + + ++ +
Sbjct: 180 ERQTMMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H ++ A+VF  T+    +  K L +  F V  + G  SQ +R  AL+  RDG+ ++ 
Sbjct: 240 LGKHKSELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F  P  M
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 193/340 (56%), Gaps = 3/340 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           PQ++ +++++ GY   T +Q   L   +  +DV+ +AQTG+GKT AF L +   L+   N
Sbjct: 26  PQLL-QSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPILHRLMPLAN 84

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+  L + PTRELA QV   ++     T +  AV  GGV +  ++  L+ G 
Sbjct: 85  TSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQKEALRRGC 144

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D++ I+   P +R+ L+F
Sbjct: 145 EILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPAQRQGLLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  L + Y    V + +A+ N     +   A  +    +  A+V++++  G K
Sbjct: 205 SATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQIAYQMPSDAKRAAVVHLVKSRGLK 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+   +R  + L     +  ++ G+ SQ +R  AL   + G   V +ATDVAA
Sbjct: 265 QVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELEVLVATDVAA 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++
Sbjct: 325 RGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAI 364


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 190/345 (55%), Gaps = 2/345 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 162/540 (30%), Positives = 277/540 (51%), Gaps = 47/540 (8%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFG 55
           MK FE    IP ++ +A++E GY N   +QE ++ P L  K  +V+  A+TG+GKT AFG
Sbjct: 1   MKTFEELGIIPDIL-KAITEIGYENPMPIQEKVI-PYLLGKGNEVIALAETGTGKTAAFG 58

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVS 113
           L +   +   ++       P A+ + PTREL +Q+  ++     Y K   ++ +  GG +
Sbjct: 59  LPILQQIQIHHEH------PQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIY-GGSN 111

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + + L+ G HIVV T GRL D I+   +++ +++ VVLDEADEML +GF + I+ IL
Sbjct: 112 IESQIKALRGGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEIL 171

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+ R ML+FSAT+   I+ + K Y ++   + I  +N     + +   +V++SDR  
Sbjct: 172 RHIPEDRNMLLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYMVSVSDRYF 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++ YH     IVFC T+         L    + V AL G+LSQ +R   +Q  R  
Sbjct: 232 LLKRLVDYHPNIYGIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLH 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVA+RG+D+  L  +I+  L S+ E+ +HRSGRTGRAG+ G S+ +I    +
Sbjct: 292 NIQLLVATDVASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEK 351

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVL--- 407
            +   + R  N +      PS + I ++   R+     F+D ++G   +E ++ D+    
Sbjct: 352 FKIRAIERCINKTFEKGIIPSGKEICKK---RLFH---FIDKLEGVEVNEGEIKDIFPSI 405

Query: 408 ------LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGG 457
                 L+K D  K  I+  F R+    +   +++  + +   +D  R+  R  A  +  
Sbjct: 406 YYKLDWLSKEDIVKRIISNEFNRL----IDYYQDVNEIKIPKEKD-IRNKRRLEAKTICT 460

Query: 458 GSRDN----FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             +DN     +G  W  +++G         L+ +L  +    + ++G I +    TF EV
Sbjct: 461 FKKDNRNLPSEGYMWLFINLGRVDGLIPSKLIGLLNDNISGRKVNVGKIDLMRKFTFFEV 520


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 227/428 (53%), Gaps = 12/428 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +AL E GY   + +Q   +   L  +D++  AQTG+GKT AF L L S L   
Sbjct: 18  SLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSMLDPN 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
            D       P A+ +APTRELA+QV   +     K   + V    GG    R+ R L   
Sbjct: 78  ED------GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRALDRK 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DHIR   L++S +  VVLDEADEML +GF +D+E+IL+ +P +R+  +
Sbjct: 132 PAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSERQTAL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           FSAT+ P I  +AK   K+ V V I +     S +  R +    +  +   + N+L    
Sbjct: 192 FSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNGMRHKIEVLGNLLETEE 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF  T+++ S   + LA     V A+ G+++Q +R  A+ ++++G+  + +ATDV
Sbjct: 252 RDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDILVATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  V + ++  + E  +HR GR GRAGR G ++ ++ +   R+   +    
Sbjct: 312 AARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLRDIEDAT 371

Query: 364 NVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-AKHDPEKIAAG 419
              +   P PS   +  IR+   ++ + + +    I  +   + D L   + D E +AA 
Sbjct: 372 RQQMQPMPPPSRALIAEIRQAKLEKKIGEIITEGRINRERTAVTDALANLETDAETLAAA 431

Query: 420 FLRIHRAG 427
            L++ + G
Sbjct: 432 LLKMLQTG 439


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   + A            AL + PTRELA QV +EL  L  +     ++ +C GG  V 
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  
Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLKRETLKLDAISTLVLDEADRMLEMGFREDIDTIISH 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232
           SP+ R+ L+FSAT   AI  ++++ Q+D + +    E    SD   I+         ++ 
Sbjct: 174 SPQARQTLLFSATWPQAIAQISQSIQRDPLTI----ETGDVSDLPAIEQTFYEAGAREKL 229

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A++ +L      + +VFC+T+         L +       L G+L Q+ER   L    +
Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDRMLIRFAN 289

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G  RV +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V FV P  
Sbjct: 290 GSCRVLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER 381
           M  RA  L       +VW    +++A+  R
Sbjct: 350 MI-RAHALEDYLQQKLVWCNLSALKAVAAR 378


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFAPATRQTLLFSATWPDA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 184/335 (54%), Gaps = 10/335 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247
           I  LA  +  +  RV +A  +   + I+ R  LVA     +    ILR+        +N 
Sbjct: 191 IERLADMFLHNPQRVEVARPSSTATTIEQR--LVATGAEGHEKRKILRHLIRSADELQNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V+   K LA H F V AL G++ Q+ R+ AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +D+P +  V + ++  +PE+ +HR GRTGRAGR G
Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAG 343


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 200/344 (58%), Gaps = 8/344 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +++ GY NLT +QE  +   L  +D++  + TG+GKTVAF + +   L   
Sbjct: 7   NLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQNLNTH 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    P A+ + PT ELA Q+  ++ ++     GV   +  GG  + R+   L+  
Sbjct: 67  ------LKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALR-K 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++I+VGTPGR+ DHI  K L +  +K +VLDEADEML +GF+ D++ +  ++P K + L+
Sbjct: 120 SNIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLL 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  +A NYQ + V + +     + ++I    V      +++ ++ + ++   
Sbjct: 180 FSATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQP 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +I+F +T+   ++  ++L  +      ++G+ S+ ER  A+++ RDG+ RV +ATDVA
Sbjct: 240 KRSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ +++ VI+ ++ +  E+ +HR GRT RAG  G+++ ++
Sbjct: 300 ARGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIV 343


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N+R     
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 75  ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + ++  +PE+  HR GRTGRAG+ G +  FVIP+ M+
Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 23  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 82  -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 23  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 82  -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 265/515 (51%), Gaps = 33/515 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + + S +    D  S A+
Sbjct: 3   AIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNI----DVASTAT 58

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTRELA+QV        A    +  + I GG S   +   L+ GAH+VVGTP
Sbjct: 59  Q--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVGTP 116

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    LN+SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FSAT+ PA
Sbjct: 117 GRVIDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMPPA 176

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     +  IVF  
Sbjct: 177 IRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVR 236

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAARG+D+  
Sbjct: 237 TKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDVER 296

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +R   +   +A    + E 
Sbjct: 297 ISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATRQPLTEA 354

Query: 372 A-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAAGF 420
             P+VE +   +AQR+ +   F DSI            +K+V     +HD     IAA  
Sbjct: 355 ELPTVEDV---NAQRVAK---FADSITAALGAPGIDLFRKLVQDYEREHDVPMADIAAAL 408

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
               R G    EE   ++    R+R    +   +     R   +  + + ++VG + K  
Sbjct: 409 AVQSRDG----EEFL-MAPEPPRERRERHTERRERTEKPRST-RPLATYRIAVGKRHKIG 462

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
              ++  +    G++R   G I + PD + VE+ A
Sbjct: 463 PGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 497


>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 533

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 189/339 (55%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA +   YV  T++Q   L   L+++D++  A+TGSGKT+AF L +   LL     F   
Sbjct: 109 EACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVIQNLLDAPQPF--- 165

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++PTREL +Q+    E L     +   V +GG+    +   L    HI++GTP
Sbjct: 166 ---YALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIALSKKPHIIIGTP 222

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR+  H++  KG N   LK +VLDEAD++L++ F  DI  ILD  PKKR   +FSAT++ 
Sbjct: 223 GRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKKRNTFLFSATMTN 282

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   KD V++ ++S+ +  S +  +   +    +D  +V  L       +I+F 
Sbjct: 283 KVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCYLVYSLNEFAGNTSIIFV 342

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  +  + T +L    F  V + G++SQ +R  A+   + G  ++ +ATDVA+RG+D+P
Sbjct: 343 QTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKILVATDVASRGLDIP 402

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++LVI+ ++ +N +  +HR GRT RAGR G ++  + Q
Sbjct: 403 SVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQ 441


>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 491

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 197/354 (55%), Gaps = 8/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI Q + +AL+ +G      +Q   +   L  +D++  A+TG+GKT  FGL +   L A+
Sbjct: 7   NIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPIIQRLGAD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL + PTRELAVQV  +LE   +     +A   GG +   +   L+ GA
Sbjct: 67  -----PEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIAQLKAGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    + LN+S ++ +VLDEAD+MLDLGF  DIE +   +P  R  ++F
Sbjct: 122 QVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPATRHTMLF 181

Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I  LA+ +      +R     E +  ++I +        D+D  +  IL+  G
Sbjct: 182 SATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDEVVARILQSEG 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ S ++  + L +  F   A+ G+L+Q++R  A+   + G+  V IATDV
Sbjct: 242 RGKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDVLIATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           AARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V FV  +++ + A
Sbjct: 302 AARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKWA 355


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 207/369 (56%), Gaps = 15/369 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+N  I  VI  AL++ G+   T +QE  +   L   D++  AQTG+GKT A+G+ +
Sbjct: 6   LEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPV 65

Query: 59  ASTLLAENDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +LA       A AP  L    ++PTRELA+QV  E+  L   T V      GG  + 
Sbjct: 66  LEKILA-------AGAPKELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDME 118

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ R L+    I+V TPGRL DH++   + +S +  +VLDEADEML++GF DDI  I+ +
Sbjct: 119 RQLRRLRKSPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSA 178

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P+ R+ L+FSAT+   I  LA+ + KD   + + ++      ++   + VA   + + +
Sbjct: 179 TPETRQTLLFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVL 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AI+F  T+  V   ++ L +  +    + G+L+Q +R + ++  R+   
Sbjct: 239 CRLLDLQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTI 298

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ- 353
            + +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+ G  + FVIP+ +  
Sbjct: 299 DILVATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDH 358

Query: 354 -RRAERLFR 361
            R  E+L +
Sbjct: 359 LRTIEKLIK 367


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 192/342 (56%), Gaps = 7/342 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++    L   D   P     AL
Sbjct: 48  GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI----LQRIDHSDPHVQ--AL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V +  CIGG SV  ++R L+NG H+VVGTPGR+ D 
Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLENGIHVVVGTPGRVGDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L+ S +K  VLDEADEML  GF+D I  +  S P+  ++++ SAT+   +  +  
Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQDVQVVLLSATMPAEVLDVTD 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ +    F V  L G++ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           + +L SN EN +HR GR+GR GRKG+++  + +N  R+ + +
Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI 383


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N+R     
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 75  ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + ++  +PE+  HR GRTGRAG+ G +  FVIP+ M+
Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 191/341 (56%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N+R     
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 75  ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + ++  +PE+  HR GRTGRAG+ G +  FVIP+ M+
Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 12  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 71  -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347


>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 472

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/459 (30%), Positives = 230/459 (50%), Gaps = 30/459 (6%)

Query: 80  IAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           + PTRELAVQ+  E++ + A K  + +    GG S+ ++   L+    IVVGTPGR+ DH
Sbjct: 2   LCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMDH 61

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R K L +  LK +VLDEADEML++GFR+DI+ IL+S P+ R+ L+FSAT+  AI  +A 
Sbjct: 62  MRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIAN 121

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            YQ +AV++N   +      I    + V    +   +  ++  +  K  +VFC+T+  V 
Sbjct: 122 KYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRVD 181

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L    ++  AL G++ Q  R + +   R G   + IATDVAARGID+ D++ V +
Sbjct: 182 DLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVFN 241

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            +L  + E  +HR GRTGRA RKG S   +      +  ++ R  N  +     P+++ I
Sbjct: 242 YDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDDI 301

Query: 379 RERDAQRILQDP-------------LFLDSIQGD---EKKMVDVLLAKHDPEKIAAGFLR 422
           +      IL +               F+  I  +   E + +D+        ++AA FL 
Sbjct: 302 KGNKVNSILDEIKEEIKEGKITTNLAFITQIAQELNAECEELDIT-----STEVAAAFLN 356

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +    +           V   D   +D +    G     N KG     +++G+K K E+ 
Sbjct: 357 VAMKKMVTGSN----PRVKLADLEHEDKKTTTYGY----NEKGYKRLFINLGNKDKLESS 408

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            L+  +  ++ ++ + IG I +    +F+EV A  VD L
Sbjct: 409 QLVKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDEL 447


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 200/366 (54%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L+ +D+   AQTG+GKT +F L + + L    
Sbjct: 9   LSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPMLTLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + +A+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++  V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYH-G 243
           AT+   I  LA  + ++  RV +++       +  R V     D +   A+ +++R    
Sbjct: 186 ATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALRDLIRAQTD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+ ++ +A+DV
Sbjct: 246 LKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQIQLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   +  + + +  
Sbjct: 306 AARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKHIDAIEKLI 365

Query: 364 NVSVVW 369
              V W
Sbjct: 366 GEDVQW 371


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/390 (34%), Positives = 205/390 (52%), Gaps = 23/390 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y  LT +Q   L P L  KDV+   +TGSGKT AFGL +   L  +N          AL 
Sbjct: 30  YHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVLQKLDVKNFNVQ------ALV 83

Query: 80  IAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           + PTRELA QV  E+  L  +   + V    GG+ +  +   LQ GAHIVVGTPGR+ DH
Sbjct: 84  LCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSLQQGAHIVVGTPGRIEDH 143

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++   L ++ +K +VLDEAD ML++GF+  ++ I+D  P++R+ L+FSAT    I  +++
Sbjct: 144 LKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLFSATFPKQIEHISQ 203

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                 VRV +AS +   +   +   + +   R  A+  +L     ++++VFC+T+  V 
Sbjct: 204 RIMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPESSVVFCNTKKEVQ 263

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  +AL G+L Q++R   L    +    + +ATDVAARG+D+  L+ V++
Sbjct: 264 MVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISILVATDVAARGLDIEALDAVVN 323

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             L+ +PE  +HR GRTGRAG +G++   I      +   L       +  EP P     
Sbjct: 324 FHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVATLAEYLGQDIQTEPLP----- 378

Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
              DA  + Q PL        + KMV +L+
Sbjct: 379 ---DASLLNQPPL--------QAKMVTLLI 397


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    +   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 12  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 71  -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 267/520 (51%), Gaps = 32/520 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + + S +    D
Sbjct: 22  PSVL-RAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKI----D 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             S A+   AL +APTRELA+QV        A    V  + I GG S   +   L+ GA 
Sbjct: 77  VASKATQ--ALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQLAGLRRGAQ 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FS
Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     + 
Sbjct: 195 ATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAAR
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363
           G+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P  +++ R  E+  R+ 
Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRAIEKATRQ- 373

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHDPEK 415
             +++    P+VE +   +AQR+ +   F DSI       G E  +K+V+    +HD   
Sbjct: 374 --TLIEAELPTVEDV---NAQRVAK---FADSITAALGRPGIELFRKLVEDYEREHDVPL 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                    ++     E +        R    DD R           F   + + ++VG 
Sbjct: 426 ADIAAALALQS-RDGEEFLMAPEPPRERRERHDDHRERAEKPRQSRPF---TTYRIAVGK 481

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           + K     ++  +    G++R   G I + PD + VE+ A
Sbjct: 482 RHKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 204/356 (57%), Gaps = 14/356 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           AL   G+V+ T +Q A + P L E  D L  AQTG+GKT AF L L + L L +      
Sbjct: 20  ALEGMGFVSPTPIQAASI-PHLMEGVDALGKAQTGTGKTAAFSLPLLNKLDLGQR----- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  + R L++GAHIVVG
Sbjct: 74  --KPQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKHGAHIVVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ 
Sbjct: 132 TPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  + + + ++ V +++A +N     ++ +  +V   ++D A+  +L       +IVF
Sbjct: 192 PMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETDASIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+
Sbjct: 252 VRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
           P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +
Sbjct: 312 PRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKSS 367


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCEAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 193/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 23  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNRAQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 82  -AGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 141 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 261 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 188/341 (55%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPILQKIDNKEHFIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q   EL  L       V V  GG  + R+ R L+    I+VGTP
Sbjct: 72  ----ALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTPAILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++ K + +  +K VVLDEADEMLD+GF  DIE ILD +  +   L+FSAT+   
Sbjct: 128 GRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNREHTLLFSATMPKP 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K+   V I S+      ID   V    +++ + +  ++       A+VF  
Sbjct: 188 ILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPDLAVVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    +    + G+LSQ +R + L+  ++G+  + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEI 348


>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 481

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/528 (29%), Positives = 251/528 (47%), Gaps = 72/528 (13%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+ + GY   T VQ+A++   L EKD++V ++TGSGKT +FG+ L   +  E ++  
Sbjct: 15  ILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLCELVEWEENK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA+QV  ++  +     +      G      +  +L+   HIVVG
Sbjct: 73  ----PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVAELKQKTHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L++  +K +VLDEADEML++GF D ++ IL   PK+R  ++FSAT  
Sbjct: 129 TPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQRTTMLFSATFP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+  Y +   +V I ++  + ++I++  + V    +   + ++         ++F
Sbjct: 189 QDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDKTKFAVLKDVTVVENPDRCMIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V    + LA   + V  + G + Q ER   ++  R G  R  +ATDVAARGID+
Sbjct: 249 CRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLVATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI  ++    E+ +HR+GRTGRAG  G ++ ++ ++  RR   + +    ++   
Sbjct: 309 ENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREVEQYRGEAIERR 368

Query: 371 PAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            AP+  E IR  DA                              EKI    +R       
Sbjct: 369 QAPTERELIRTADAFE----------------------------EKITTADVR------- 393

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
                      S  ++   D       GG +   +   +    VG+  K E         
Sbjct: 394 ----------ASKTEQLNADIMKLYFNGGKKKKLRAVDF----VGTIAKIE--------- 430

Query: 490 RSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLR--RTVKLDKGIQLK 534
              G+  Q IG I +Q  +T+VE+ +  G  +LR  +T K+ KG QLK
Sbjct: 431 ---GMTAQDIGIITIQDTVTYVEILNGKGPLVLRAMKTTKV-KGKQLK 474


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L       
Sbjct: 9   NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 62

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +P S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+  
Sbjct: 63  -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +I+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+
Sbjct: 122 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVA
Sbjct: 242 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R  
Sbjct: 302 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 354

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                     ++E   +R   R +++P   ++++G ++  V+ L
Sbjct: 355 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 387


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHKPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3]
 gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 199/341 (58%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           I  AL+E G+   T +Q   L   L++KD+   AQTG+GKT+AF +A    L +T + E 
Sbjct: 20  IKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEG 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++ + L   TG+ V +  GG S   +R+ L  G  
Sbjct: 80  RQLN---QPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P  K R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   ++ +L     
Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTLLEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +T+ S  +    L     +V  L+G++ Q++R   L++  +G+  V +ATDVA
Sbjct: 257 DKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLDVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSV 357


>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 188/345 (54%), Gaps = 3/345 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+      S  +AP AL +APTRELA Q+          T + V    GGVS   +   
Sbjct: 62  KLV--ESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF +D++ ++ S  ++R
Sbjct: 120 LKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K A  V +   N   S +++    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +     K L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAGR+G ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAI 344


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 194/338 (57%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   LL++ +R +
Sbjct: 12  ILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLE-LLSKGNR-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 70  QAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 130 TPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  S +   ++ +++ +  +  +VF
Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347


>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 593

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/351 (36%), Positives = 196/351 (55%), Gaps = 14/351 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P+++ +AL++ G V    +Q   L   +   D++  A+TG+GKT+ FG+ L   ++A   
Sbjct: 23  PEIV-QALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPGE 81

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D       P AL I PTRELAVQV ++LE    K  V +    GG +   + + L+ 
Sbjct: 82  PGYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKALEQ 141

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ D ++   L+++  + VVLDEADEMLDLGF  D+E +L  +P  R  +
Sbjct: 142 GVEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRHTM 201

Query: 184 MFSATISPAITTLAKNYQKDA--VRVNIASENRQH----SDIDYRAVLVALSDRDNAIVN 237
           +FSAT+  A+  +A+ Y K    +R N   +  Q       + YRA  +   D+   +  
Sbjct: 202 LFSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHAL---DKVEVLAR 258

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G   +IVF  T+ + ++    LA+  F   A+ G+L Q  R  AL+  R G+  V
Sbjct: 259 ILQSEGRGLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSGKIDV 318

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ ++  V++ +   + +  LHR+GRTGRAG KG +V  +
Sbjct: 319 LVATDVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFV 369


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 277/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ +++ 
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+ +   F DSI       G E  +++V+    +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVEEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 626

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 193/353 (54%), Gaps = 12/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK FE   + + I  A++E G+     VQ+ ++ P L     DV+  AQTG+GKT A+G+
Sbjct: 1   MKTFEELGVSEEIRRAITELGFETPMPVQQEVI-PYLLGNGNDVVALAQTGTGKTAAYGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            +   +       +      AL ++PTREL +Q+  +L ++     G+ V    GG S+ 
Sbjct: 60  PILQKID------TSKKETQALVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R ++ G  I+V TPGRL D +      +  +  VVLDEADEML++GF + I  I + 
Sbjct: 114 AQIRTIKRGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  I  +A+NY  DA  + + S N     +++   +V   D+  A+
Sbjct: 174 IPQDRNTLLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNHIYYMVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+ Y+    AI+FC T+         L    +   AL G+LSQQ+R   +Q  R    
Sbjct: 234 KRIVDYYPHIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMT 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I
Sbjct: 294 QFLVATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISII 346


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 210/387 (54%), Gaps = 15/387 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL   GY++ T VQ+ ++   L +KD++V +QTGSGKT AFG+ +    +A+ D   
Sbjct: 15  IVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPICE--MADWDE-- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTRELAVQV  ++  +     +  A   G     +++ +L+   HIVVG
Sbjct: 71  --NKPQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELKQKTHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI      +  LK +V+DEADEML++GF + +E I+   P+ R  ++FSAT+ 
Sbjct: 129 TPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMTMLFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y K+   + I +       I++  + V    + + + ++L      + I+F
Sbjct: 189 EDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDHKFSLLKDVLVTENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +V + ++ L    +    + G + Q++R + +   + G  R   ATDVAARGID+
Sbjct: 249 CRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLAATDVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            ++  VI+ +L    E+ +HR+GRTGRAG +G ++ FV P       +R   E    + +
Sbjct: 309 ENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYE-----KRFLAEIEAYIGF 363

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSI 396
           E  P  EA    +  R  + P FL+ +
Sbjct: 364 E-IPQAEAPSREEVSR--KKPAFLEKL 387


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +    + F  A
Sbjct: 14  KAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPILQKI-NNKEHFIQA 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L I PTRELA+Q   EL  L       V V  GG  + R+ R L+    I+VGTP
Sbjct: 73  -----LVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIRALKQTPAILVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++ K + +  +K VVLDEADEMLD+GF  DIE ILD +  +   L+FSAT+   
Sbjct: 128 GRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNREHTLLFSATMPKP 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K+   V I S+      ID   V    +++ + +  ++       A+VF  
Sbjct: 188 ILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLIDVQAPDLAVVFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ L    +    + G+LSQ +R + L+  ++G+  + +ATDVAARG+D+  
Sbjct: 248 TKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILVATDVAARGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 VTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEI 348


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 187/333 (56%), Gaps = 6/333 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   +  + ++    
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+   HIVVGTP
Sbjct: 72  --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++S +   V+DEADEML++GF   +E I+   PKKR  L+FSATI   
Sbjct: 130 GRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPDE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   +    + + I S+N    ++ + A  V  + + + + NIL     + ++VFC 
Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEMPETSVVFCR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+A+RGID+  
Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ ++    E  +HR GRTGRAG KG+++
Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVAL 342


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + LA  D
Sbjct: 16  QDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLASRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    ++ + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSEQCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1]
 gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 494

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 204/365 (55%), Gaps = 12/365 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + +   N R+    A
Sbjct: 54  LEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA 110

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  A+  + +    GGVS+  +   L++GAHI+VGTPG
Sbjct: 111 ---LVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEHGAHIIVGTPG 167

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R+ L+FSAT    I
Sbjct: 168 RIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTLLFSATYPAGI 227

Query: 194 TTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA ++ ++  +V + S    H+D  I+ R + +    R  A+  +L ++  ++ + FC
Sbjct: 228 KQLAADFMRNPQQVKVES---LHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRPQSCVAFC 284

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L        AL G+L Q++R   L M  +  + V +ATDVAARG+D+ 
Sbjct: 285 FTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVAARGLDID 344

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ +       + W+ 
Sbjct: 345 GLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQKSPLRWDQ 404

Query: 372 APSVE 376
             S++
Sbjct: 405 LDSLK 409


>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
 gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
          Length = 433

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 199/348 (57%), Gaps = 10/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E+E  L  K  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P+ ++ ++
Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y K+   + I SE    ++I  R +      + +A+ +++     
Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L  + +    L G+LSQ +R   ++  R+ + +  IATDVA
Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++ FV P++
Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 191/349 (54%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 45  PKVL-KAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 102

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 103 --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGVDV 160

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 161 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 220

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     RV +A +     +I+   V+   S +D         +  ++ 
Sbjct: 221 TMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEKRRVLRTLIE 280

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  N I+FC+ +  V    K L ++ F    + G+L Q +R+  L   RDG  R+ 
Sbjct: 281 QEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDGFRDGSLRIL 340

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +
Sbjct: 341 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITI 389


>gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/366 (38%), Positives = 203/366 (55%), Gaps = 18/366 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +A+S RGY  LT VQ  +L   +  KD++  AQTG+GKT AF L L +TL+
Sbjct: 6   FDLHPKIL-DAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNTLI 64

Query: 64  AENDRFSPASAPLA-------LAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGV 112
            E   F+ + A L        L + PTRELA+QV   +    ++L  KT  V     GG 
Sbjct: 65  KEYSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAV----YGGS 120

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +++ +R+ LQ G  I+V TPGRL DHI   GL++S++  +V+DEAD MLDLGF  DIE +
Sbjct: 121 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 180

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + L FSAT S A+ TLA+        +N+A+ +   S I     LV    + 
Sbjct: 181 KKLVAPAHQTLFFSATYSDAVKTLAEKMLIAPEWINVAT-SATASLITQEIYLVDTRRKA 239

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  ++  +  +  +VF STR S       L     +     GE +Q  R+ AL+  + 
Sbjct: 240 ELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEEFKS 299

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G+ RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV PQ+
Sbjct: 300 GKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQD 359

Query: 352 MQRRAE 357
            +   E
Sbjct: 360 REMMQE 365


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 196/345 (56%), Gaps = 10/345 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY  +T +Q   L   L  +D+L  A+TGSGKT AFG+ L   L     R         L
Sbjct: 21  GYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGLLHNLDVSLFRVQ------TL 74

Query: 79  AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  EL  +   K  + +    GG+ +  +   L++ AHIVVGTPGR+  
Sbjct: 75  VMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQLASLEHQAHIVVGTPGRIEQ 134

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H++ + LN+ H+  +VLDEAD MLD+GF D ++ I+   P++R+ L+FSAT    I  L+
Sbjct: 135 HLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLPRRRQTLLFSATFPDEILRLS 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRAS 256
           + +Q  A RV +  E+ ++S    +       D+  AIV+ IL  H  ++ ++FC+T+A+
Sbjct: 195 EQFQYKAQRVIVDVEHEENS--IQQEFFECKWDKKAAIVSRILATHKPESTLIFCNTKAN 252

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L    F  +A+ G+L Q+ER+  L    +G + + +ATDVAARG+D+  L  V
Sbjct: 253 CRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPIMVATDVAARGLDINGLSAV 312

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           I+ +L    E  +HR GRTGRAG++G++  ++    + R E + R
Sbjct: 313 INVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLEEINR 357


>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 483

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +ALS   Y+  T +QE ++   L  KD++  ++TGSGKT AF + +  +++ E +   
Sbjct: 15  IIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEEN--- 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  E+  +     V V V  GG    ++   L+  +HIVVG
Sbjct: 72  ---LPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQKSHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH     L  S++K V++DEAD MLD+GF DD++ IL   P+   +++FSAT+ 
Sbjct: 129 TPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFSATMG 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            A+  L   +    V V +         I+     V   D+    + +L  +   NA++F
Sbjct: 189 EALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTNAMIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR  V      L +       L G + Q++R + +   R G  R  IATDVAARG+D 
Sbjct: 249 CGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAARGVDF 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  VI+ +L  + E  +HR GRTGR G+ G ++  I +  ++    + +     +   
Sbjct: 309 DDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTPIEIV 368

Query: 371 PAPSVEAIRE 380
             PS E +RE
Sbjct: 369 TPPSEEEVRE 378


>gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 657

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/399 (33%), Positives = 217/399 (54%), Gaps = 12/399 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE   + + I  A+ E G+ N   VQE ++   L  K DV+  AQTG+GKT ++G+ 
Sbjct: 1   MKTFEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
           +    + + D  S  +   A+ ++PTREL +Q+  +L   +AK   G+ +A   GG  + 
Sbjct: 61  V----IQKTDASSKQTQ--AVILSPTRELCLQIADDLNS-FAKYIDGLHIAAVYGGTDIG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L++G  I+V TPGRL D I      + ++  VVLDEADEML++GF + I  I ++
Sbjct: 114 SQIRTLKHGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFEN 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R  L+FSAT+S  I  +A NY  D   + + S N     +++   LV   D+  A+
Sbjct: 174 VPEDRNTLLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R+   
Sbjct: 234 KRVVDFYPRIFAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTV 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATDVAARG+D+ DL  VI+  L  +  +  HRSGRTGRAG+KG S+ +I    + +
Sbjct: 294 QFLVATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFK 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
             ++ ++     V    P+ E I ++   + + D +  D
Sbjct: 354 VRQIEKQIGKEFVDGVLPTPEEICKKQLFKTMDDIMKTD 392


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L    
Sbjct: 9   LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA 
Sbjct: 69  AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241
           AT+ P I  LA  + ++  R+ +A        +  R   VA   +D     +LR      
Sbjct: 186 ATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+
Sbjct: 244 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNLQLLVAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 304 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 350


>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 432

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 193/367 (52%), Gaps = 10/367 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E+GY   + +QE  +   L  KD+L SAQTG+GKT  F L +   L+       P 
Sbjct: 14  KAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQYLVETK---HPK 70

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             PL AL + PTRELA QV   +        +   V  GGV+   +   L++G  I+V T
Sbjct: 71  YRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIATLRSGVDILVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    K L+   ++ ++LDEAD MLD+GF  DI  I+   P KR+ LMFSAT S 
Sbjct: 131 PGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKRQNLMFSATFSN 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    +D V V  A +N     + ++   V  + +    + +++       +VF 
Sbjct: 191 DIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTEFTIKLIKEGNWNQVLVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++ T+ L +      A+ G  SQ  R+ AL+  +DG  ++ +ATD+AARG+D+P
Sbjct: 251 RTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKILVATDIAARGLDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
            L  V++ EL + PE+ +HR GRTGRAG  G ++ ++       Q   E+L  E   S +
Sbjct: 311 LLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSEIEKLLNEKLKSTI 370

Query: 369 ---WEPA 372
              +EP 
Sbjct: 371 VAGFEPT 377


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 198/343 (57%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P+++  AL+E G+   T +Q   L   L  KD+   AQTG+GKT+AF +A  + LL   A
Sbjct: 18  PEILA-ALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              R   A+ P A+ +APTRELA+Q+ ++ + L A TG+ V +  GG S   +R  L  G
Sbjct: 77  PESR--KATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GR+ D++R   +++SH++AVVLDEAD M DLGF  DI F+    P  K R  
Sbjct: 135 VDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  D  +V I    +   +I       ++ D+   +++++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLLSLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVF +T+ S  +    L     +V  L+G++ Q++R   L+    G   V +ATD
Sbjct: 255 WPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEIDVLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+S+
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISI 357


>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
 gi|91207782|sp|Q4IFI0|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 486

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 194/340 (57%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA  +  Y   T +QE  +   L+ +D++  A+TGSGKT AF L +   LL   D+  P 
Sbjct: 73  EACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQALL---DKPQPL 129

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+G+  E L +   +  AV +GG+ +  +   L    HIVV TP
Sbjct: 130 ---FGLVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATP 186

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +++DEAD +LD+ F   I+ IL   P++RR  +FSATIS 
Sbjct: 187 GRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISS 246

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I +L +   +D V+V+I+S   Q  S +    + +    +D  ++ ++  H  ++ IVF
Sbjct: 247 KIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIYLINEHAGQSTIVF 306

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 307 TRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILVATDVAARGLDI 366

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q
Sbjct: 367 PSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQ 406


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 193/349 (55%), Gaps = 15/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66
           I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ +   ++A +    
Sbjct: 89  IVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEPGF 148

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +P S P AL + PTREL+ QV  +L          +    GGV+   +   L+ GA
Sbjct: 149 DDLLNPNS-PQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFEPQISALKKGA 207

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L   P  R  ++F
Sbjct: 208 DVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPSHRHTMLF 267

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+   +  LA+ + +    +     + QH  ++      YR   V   ++   +  IL
Sbjct: 268 SATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYR---VHSLNKVEVLARIL 324

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A++FC T+ + +R  + LA   F V +L G+L Q  R  AL+  R+G+  V +
Sbjct: 325 QSKGRGRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 384

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  V++ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 385 ATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 433


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 206/367 (56%), Gaps = 12/367 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPMRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APSVEAI 378
           AP+ +++
Sbjct: 369 APARQSL 375


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 189/348 (54%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I E + +  Y+  T VQ+  +      +D++  AQTGSGKT AF + + +TL+  
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   S   APLAL IAPTRELAVQ+ +E       T +   V  GGV V    R +
Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK 178
           Q   H++VGTPGRL D +  + +++++LK ++LDEAD MLD+GF  +I+ I+   D  PK
Sbjct: 479 QQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538

Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  LMFSAT    I  LA  +  + V + I      HSDI    + V  S + + ++ 
Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G    +VF  T+         L ++ F   ++ G+  QQ+R  AL   + G   V
Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IAT VAARG+D+ D++ VI+ +L    E  +HR GRTGR G KG ++
Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAI 706


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N+R     
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 75  ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +   H+K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + ++  +PE+  HR GRTGRAG+ G +  FVIP+ M+
Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 190/341 (55%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N+R     
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDG-NERHVQV- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 75  ----VILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +   H+K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 QQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDIQTPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + ++  +PE+  HR GRTGRAG+ G +  FVIP+ M+
Sbjct: 311 SHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREME 351


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 204/368 (55%), Gaps = 12/368 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P  + I +A ++ G+   TS+Q       L+ KD++  A+TGSGKT  F L +   
Sbjct: 140 FKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVFHQ 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L +  R    + P+ L +APTREL+VQ+  E +      G+    C GG S H +   L
Sbjct: 200 HLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIAAL 259

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180
           Q G   V+ TPGRL D I  +  ++S ++ +VLDEAD MLD+GF   I   IL+  P+ R
Sbjct: 260 QRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENR 319

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT    I  LA ++ K+ +++N+   N    + DI    V+ + S++ + +  I
Sbjct: 320 QTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQI 379

Query: 239 LR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           LR   HG    IVF + + S +     L E  F V +L G+  Q ER+  +Q  + G+ R
Sbjct: 380 LRDLMHG--KIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLR 437

Query: 297 VCIATDVAARGIDLPDLELVIHAELSS---NPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           V IATDVAARG+D+ D+ +V++ ++ S     E+ +HR GRTGRAG KG +     Q  +
Sbjct: 438 VLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDR 497

Query: 354 RRAERLFR 361
           + A +L +
Sbjct: 498 KNATQLVQ 505


>gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 434

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 206/371 (55%), Gaps = 9/371 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   I Q + +AL + G+     +QEA +   L  +DV+  A TG+GKT A+ +++
Sbjct: 1   MTKFEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               L +APTRELAVQ+  E++     T V      GG S+  + 
Sbjct: 61  LQEI-------KEGGGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I+V TPGRL DHI+   ++I  +  +VLDEAD MLD+GF DDI+FILD +P 
Sbjct: 114 DALKRGAEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ M +FSAT+   I  L++ Y K+  +  + +++     ID   +++   ++ + +V+ 
Sbjct: 174 EKVMSLFSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDREKMDYLVDF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +G    IVFCST+       ++L +  +  VA+ G++SQ  R  ++   R  +A++ 
Sbjct: 234 IKENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P + LV++ ++ +      HR GRT RAG KG ++ ++  +     + 
Sbjct: 294 VATDVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDV 353

Query: 359 LFREANVSVVW 369
           + R+    V +
Sbjct: 354 IKRQIKAKVTY 364


>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 411

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 192/344 (55%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71
           L+  G+ + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA     SP   
Sbjct: 16  LASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLA----LSPLQE 71

Query: 72  --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             A  P+ AL + PTRELAVQV +        T + V +  GGVS+  +      G  ++
Sbjct: 72  LTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  AI +L+K   +D   + +A  N   ++I+ + V    +DR   +V +++R       
Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDVAARG
Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q 
Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354


>gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 257/517 (49%), Gaps = 29/517 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   + E GY   + +Q   + P L  +D+L  AQTG+GKT AF L L S L        
Sbjct: 18  INRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFALPLLSRLDLS----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              +P  L + PTRELA+QV   ++  YA+   G  V    GG ++ ++ R LQ GAH+V
Sbjct: 73  -LRSPQVLVLTPTRELALQVAEAVQT-YARHLQGFHVLPVYGGQNMGQQLRQLQRGAHVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   L +  L  VV+DEADEML +GF DD+E IL+ +P++R+  +FSAT
Sbjct: 131 VGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPEQRQTALFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +A+ + ++ V V I ++      I  R   V    + +A+  IL        I
Sbjct: 191 MPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRKLDALTRILEAEDIDAMI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+ +     + L    F   AL+G+++Q  R   ++ ++ G   + +ATDVAARG+
Sbjct: 251 VFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIVVATDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +    +R    + +     + 
Sbjct: 311 DVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAAIEQATRQKIA 370

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG--- 419
               PS + I  R      +    LD++Q  +    + ++D +  + D  P  +AA    
Sbjct: 371 PMKLPSRQDITNRRVALFKEQ--ILDAMQSQDLEFFEDLIDGIQQEFDTEPRTVAAALTY 428

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L+  R  L   E    V   SG  RF         GGG     +G   + + VG     
Sbjct: 429 LLQKDRPLLPDEEAFEEVLPASG-GRFD--------GGGRSHADEGLQRYRIEVGRVHGV 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               ++  +   + I+ + IG I++  D + V++ AD
Sbjct: 480 VPGHIVGAIANEAKISSRDIGQIKIYHDFSLVDLPAD 516


>gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 731

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/351 (36%), Positives = 190/351 (54%), Gaps = 19/351 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 324 AIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNE 383

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +V+ T
Sbjct: 384 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIAT 443

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 444 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEEEELD 503

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++ + 
Sbjct: 504 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMSR 563

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ S     K L +  F+V AL G  SQ +R  +L   R+ R
Sbjct: 564 LQKILTDLGDKTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGKSQDQREISLDGFRNRR 623

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++ 
Sbjct: 624 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGLAT 674


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T]
 gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301]
 gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401]
 gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
 gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
 gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
 gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
          Length = 455

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 204/373 (54%), Gaps = 14/373 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +      
Sbjct: 18  LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E     ++L G+L Q  R   L    +G ARV +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKS 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+ 
Sbjct: 308 LELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQT 366

Query: 372 APSVEAIRERDAQ 384
            P+  +I   +A+
Sbjct: 367 PPANSSIVTLEAE 379


>gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 539

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 143/396 (36%), Positives = 209/396 (52%), Gaps = 41/396 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63
           AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L                 
Sbjct: 65  ALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQKAQAGQP 124

Query: 64  --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                   A   R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 125 REPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 178

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +D
Sbjct: 179 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIED 238

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I      V  
Sbjct: 239 IETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVDD 298

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 299 RDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 358

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 359 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 418

Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374
           +    Q   +R ER  R     NV   +EP   APS
Sbjct: 419 VHHAEQGALKRIERFVRAPLAVNVVEGFEPRKSAPS 454


>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 516

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 195/354 (55%), Gaps = 17/354 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL   G +    +QE  L   L   D++  A+TG+GKT+AFGL L     A+ D  +
Sbjct: 5   LADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQR--AQKDPGT 62

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P AL + PTRELA+QV  +L     ++G  +    GG S   +   L+ G  +VVG
Sbjct: 63  PKR-PRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTDVVVG 121

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + K L +  + AVVLDEAD+MLDLGF  DIE IL  +P  R+ ++FSAT+ 
Sbjct: 122 TPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFSATMP 181

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILRY 241
             I +L++ Y +    V  + ++    +ID  A+   ++         D+   +  +L+ 
Sbjct: 182 SEIVSLSRKYLRRPTHVRASDDD----EIDGSAITGQITQHAFRTHQMDKIEMLARLLQA 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                ++VFC T+ +  R    L    F V A+ G+L Q +R  AL+  R+G+  + +AT
Sbjct: 238 SDHGQSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DVAARG+D+ D+  V++ E   + +   HR GRTGRAGR G +V FV  Q M R
Sbjct: 298 DVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFVDWQEMPR 351


>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
 gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
          Length = 451

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 199/372 (53%), Gaps = 7/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L+E G    T +Q   +   +  +D+L  AQTG+GKT AFGL L + +  E  +  
Sbjct: 12  ITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLLTAIAREQGKPE 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +    L +APTRELA Q+   L+     T + V + +GG S++ +   L  G  ++V 
Sbjct: 72  PKTV-RGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNRLARGTDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  + + +S  + +VLDEAD+MLDLGF   +  I    P+ R+ ++FSAT+ 
Sbjct: 131 TPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTRQTMLFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  +A +Y  D VRV  A   +    I+     +A  ++   ++  L  H A  AIVF
Sbjct: 191 KLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIAQGEKTALLIEHLDAHRADPAIVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  K L    +  VA+ G  SQ +R  A++  R+G A V +ATDVAARGID+
Sbjct: 251 ARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEAMVLVATDVAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF-REANVS 366
           P +  V + +L +  +N +HR GRT RAGR G ++ +  P  M   R  ++L  +E  VS
Sbjct: 311 PGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGELRDIQKLLGKELPVS 370

Query: 367 --VVWEPAPSVE 376
              VW    S E
Sbjct: 371 GGTVWSGGASAE 382


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 190/345 (55%), Gaps = 2/345 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   P+ R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRGR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 194/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + L   D
Sbjct: 16  QDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNIDLKSRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + E        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     + + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSDECQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDILVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score =  212 bits (539), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 196/341 (57%), Gaps = 12/341 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +QE  +   L  +DVL  AQTG+GKT +F L +   L     R   A 
Sbjct: 15  AIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIERLSRGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P +L +APTRELA QV   ++ LYAK   + +A+ IGGVS   +++ L  GA I++ TP
Sbjct: 72  MPRSLVLAPTRELAAQVADNVK-LYAKNHKLNMALLIGGVSFEPQKKILDQGADILIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE IL   P +R+ L FSAT+   
Sbjct: 131 GRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRRQTLFFSATMPGE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-----RDNAIVNILRYHGAKNA 247
           I  L   + +D  RV + +   Q +D   + +L  +SD     +  A+   +   G KN 
Sbjct: 191 IKHLVDTFLRDPERVEV-TRPAQTADTITQFIL-RVSDNQARTKREALRAAINRDGVKNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V    + L  H F    + G+L Q +R+  L   + G  R+ +A+DVAARG
Sbjct: 249 IIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+P +  V + ++  N ++ +HR GRTGRAG+KG +V ++
Sbjct: 309 LDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLV 349


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 4/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L   LL       
Sbjct: 21  ILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPLLHRLLGVGHPPP 80

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +   AL +APTREL  Q+   LE     T V V    GG S++R+   L  GA I+V 
Sbjct: 81  PRTI-RALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQTERLARGADIMVA 139

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + + H   +VLDEAD+MLD+GF   +  I    P KR+ L+FSAT+ 
Sbjct: 140 TPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMP 199

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  + ++ VRV +A   +    I      +   D+   + + L  H  + A+VF
Sbjct: 200 KLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDKAKLLESYLLKHPGEQALVF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V +ATDVAARGID+
Sbjct: 260 GRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDVLVATDVAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           P +  V + ++ + PEN +HR GRT RAG +G +V FV P  M   R  E+L ++
Sbjct: 320 PGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFRAVEKLLKQ 374


>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 566

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 195/360 (54%), Gaps = 14/360 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+     +   
Sbjct: 43  NVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPALQRVAGR 102

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +   +   L
Sbjct: 103 DDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYEPQIDAL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  IVVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++  +P  R+
Sbjct: 163 QKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAGTPAVRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAI 235
            L+FSAT+   +  +A+ Y      +  A  N      R    + YRA  +   D+   +
Sbjct: 223 TLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSM---DKTEVV 279

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+ + 
Sbjct: 280 ARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRNNKV 339

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V FV   +M R
Sbjct: 340 DVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPR 399


>gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 406

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 204/372 (54%), Gaps = 15/372 (4%)

Query: 1   MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           MK F+ +  V  +   + E+G +  T +QE  +   L+ E D +  AQTG+GKT AFGL 
Sbjct: 36  MKTFKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLP 95

Query: 58  LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
           L         R  P    + AL ++PTRELA Q+ ++L + Y K    +      GG  +
Sbjct: 96  LLQ-------RIDPTQKRVQALVLSPTRELAKQIAKQL-FHYTKYTAKIFTEAVAGGEKI 147

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L    HIVV TPGRL D ++ K +++S +  +VLDEADEML +GF+D++  IL+
Sbjct: 148 EGQIAALSRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILE 207

Query: 175 SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            +   +R  +FSAT+   +T + + Y   DA  V +  +N  + +I++   +  + ++ +
Sbjct: 208 FTRGAKRTWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPD 267

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I   ++    +  +VFC ++A V      L E  F+V  L G+LSQ++R   ++  R  
Sbjct: 268 EIARFIKAQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKE 327

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R+ V ++TDV+ARGID+  L  V+H +L    E   HRSGRT RAGRKG+S+  I +   
Sbjct: 328 RSEVLVSTDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDV 387

Query: 354 RRAERLFREANV 365
           +R   L  E ++
Sbjct: 388 KRIRELQTELHI 399


>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Anolis carolinensis]
          Length = 445

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 194/345 (56%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL   
Sbjct: 23  VTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETP 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 83  QRF------FALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPH 136

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 137 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V IL      
Sbjct: 197 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGN 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G+++Q +R  +L   +     V +ATDVA+
Sbjct: 257 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVLLATDVAS 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 317 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 361


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 193/350 (55%), Gaps = 10/350 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  AL E+G V+   +Q   L   L   D++  A+TG+GKT+ FG+ L S + A  +
Sbjct: 41  PDIVA-ALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLLSRVTAPGE 99

Query: 68  RF-----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +P   P A+ + PTRELAVQV  +LE    K G+ +A   GG +   +   L+
Sbjct: 100 TSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAFEPQVERLE 159

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++VGTPGR+ D      L+++++  +VLDEADEMLDLGF  D+E IL  +P  R+ 
Sbjct: 160 KGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILAMTPGGRQT 219

Query: 183 LMFSATISPAITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++FSAT+  A+ TLA+ Y      +    + ASE    S+I+         D+   +  I
Sbjct: 220 MLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMDKVEMLARI 279

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       I+F  T+ + ++ +  L    F    L G+L Q  R  AL+  R G+  V 
Sbjct: 280 LQAKDRGLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAFRSGKVDVL 339

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G++V ++
Sbjct: 340 VATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLV 389


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/337 (38%), Positives = 189/337 (56%), Gaps = 10/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   T++Q   +   L  +DV+ SAQTGSGKT AF L +   L       +P  
Sbjct: 19  AIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPMLQQLAN-----APTG 73

Query: 74  APL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            P     L + PTRELA QVG  +     Y    V VAV  GGVS++ +  +L+ GA IV
Sbjct: 74  TPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQMMNLRGGADIV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L IS +  +VLDEAD +LDLGF +++  IL+  P +R+ L FSAT
Sbjct: 134 VATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILELLPPRRQNLFFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PAI  LA++   D +R+ + +      DI  RA+ V  S R   + ++++    + A+
Sbjct: 194 FPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQVDASRRTQLLRHLVQTEKWERAL 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L +   +     GELSQ +R+  LQ  R    +V +ATDVAARGI
Sbjct: 254 VFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQVVVATDVAARGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  + +V++ +L  +  +  HR GRTGRAG  G++V
Sbjct: 314 DIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAV 350


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 197/356 (55%), Gaps = 9/356 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++   +  E+          AL
Sbjct: 48  GFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQ------AL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V +  CIGG SV  ++R L+ G H+VVGTPGR+ D 
Sbjct: 102 VMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L+ S +K  VLDEADEML  GF+D I  +  S P+  ++++ SAT+   +  +  
Sbjct: 162 INRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTN 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 222 RFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E+ F V  L G++ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + +L SN EN +HR GR+GR GRKG+++  + +N  R+ + +  E+  +   E  P
Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEI--ESYYTTQIEEMP 395


>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
 gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
          Length = 618

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 198/382 (51%), Gaps = 9/382 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLR--EKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           ++ +A+  +G+   T +Q  +  P L   E +++  A+TG+GKT AFGL L   L A+  
Sbjct: 13  IVLQAIEAKGFETPTPIQ-ILAIPRLLSGETNIIAKARTGTGKTGAFGLPLIQELRAD-- 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTRELA+QV  E+E    +T   +AV  GG S+  + R L+ GA I
Sbjct: 70  ----LGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRALKKGAEI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGR+ DHI    L+++ ++  +LDEADEML++GF  DIE I   +    R+LMFSA
Sbjct: 126 IVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNARILMFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I ++A ++  D   V         S  +     V   D+  A++ ++        
Sbjct: 186 TMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFVREEDKIEALIRLIDITPDFYG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+       K L E  ++  AL G++ Q +R   L   R  + R  +ATDVAARG
Sbjct: 246 LVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTLVATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +  V++  +  +     HR GRTGRAG  G +V  I  N  R+ + L R A    
Sbjct: 306 IDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDYLARHARGEF 365

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
                PS+E +      RIL +
Sbjct: 366 KEGKIPSIEKVLAYKETRILSE 387


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/355 (37%), Positives = 198/355 (55%), Gaps = 13/355 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ GY   + +Q   +   L   D++  AQTG+GKT AF L L   +  +       
Sbjct: 19  QTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPLMEQIDVK------L 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + P AL + PTRELA+QV   L+  YAK   G  V    GG S   + + L  GAH++VG
Sbjct: 73  TKPQALILTPTRELAIQVAEALQ-TYAKNLPGFHVLPIYGGQSYTIQLKQLSRGAHVIVG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  K LN+ HLK +VLDEADEML +GF DD+E+IL+ +P + +  +FSAT+ 
Sbjct: 132 TPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTPAQHQTALFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIV 249
             I  +A+ Y  +   + I S     + I      V+   + +A+  IL      + AI+
Sbjct: 192 EQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTRILEVEEDFDAAII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L+   +   AL+G+L+QQ R   ++ ++ G   + IATDVAARGID
Sbjct: 252 FVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALDIVIATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361
           +P +  V++ ++  + E  +HR GRTGRAGR G ++ FV P+   M R  ER  R
Sbjct: 312 VPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRMLRTIERATR 366


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 200/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 12  MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 72  VAQMLEREARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 131 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    I      +A +++ + ++ +
Sbjct: 191 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 251 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F  P  M
Sbjct: 311 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 365


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/335 (37%), Positives = 197/335 (58%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  GY + T +Q   +   ++  D+  SAQTGSGKT AF L      +A N R  P 
Sbjct: 14  KALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPALHHCVA-NPR-KPT 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P  L ++PTRELA+Q+  + +        V +VCI GGV  H ++R L+    I++ T
Sbjct: 72  VGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQRKLRRPYEILIAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D+I  K +N+S ++ +VLDEAD MLD+GF + +E I  ++P  R+ L+FSAT+  
Sbjct: 132 PGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSSRQTLLFSATMQG 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
           ++  L+     + + + I SE  +H +I  +   V  L  ++  + +IL     K+AIVF
Sbjct: 192 SVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDGLQHKNQLLEHILNDDVVKHAIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST+   S+    L +      AL G++SQ++RS  +  +R G+ +V +ATDVAARGID+
Sbjct: 252 TSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKVLVATDVAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  VI+ +L  N E+ +HR GRTGRAG  G ++
Sbjct: 312 QNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTAL 346


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 193/355 (54%), Gaps = 5/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL   +R +
Sbjct: 34  ILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLTRGNR-A 91

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  I+V 
Sbjct: 92  QAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGKGVDILVA 151

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + LN + L+ ++LDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 152 TPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQNLMFSATFS 211

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     ++     V    +  A++++++ +  K  +VF
Sbjct: 212 DDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKTAALIHLIKQNDWKQVLVF 271

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L  +     A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 272 SRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAARGIDI 331

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++      + R  ERL ++
Sbjct: 332 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDIERLIKQ 386


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/332 (37%), Positives = 182/332 (54%), Gaps = 2/332 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G+   T +Q   +   L+ +DVL  AQTG+GKT AF + + + +  E      A  
Sbjct: 16  LTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPIINMIHTEKSS-KRAIG 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L + PTRELA Q+G     L   T V      GGV    + + LQ+G  I++ TPGR
Sbjct: 75  IKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQIQKLQDGIDILISTPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D I    ++IS ++ +VLDEAD MLDLGF DDI  +     K+ + L FSATI+P I 
Sbjct: 135 MFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTKRHQTLFFSATINPEIK 194

Query: 195 TLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            LA    +  A+R+ I+ E+    +I +  + V + D+   +   LR +     I+F  T
Sbjct: 195 KLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVEMDDKRFFLAEYLRQNPDGKFIIFVRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R  K LA    Q + L GE  Q +R+  ++  R G  ++ IATD++ARGID+PD+
Sbjct: 255 RVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCKILIATDLSARGIDIPDV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L   PEN +HR GRTGR   KG++V
Sbjct: 315 THVINYDLPEKPENYVHRIGRTGRGFNKGVAV 346


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY N T VQ  ++   L+++D++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEIESYIGFEIPKAYAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 602

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 259/516 (50%), Gaps = 28/516 (5%)

Query: 13  EALSERGYVNLTSVQEA----ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +A+ + G+ + + VQE     +LN D    D++  AQTG+GKT AFG  L   +      
Sbjct: 15  DAIVDLGFESPSEVQEKAIPILLNEDT---DLVALAQTGTGKTAAFGFPLIQKID----- 66

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            S +     L ++PTREL +Q+  EL+ +   + G+ V    GG S+  +   ++ GA I
Sbjct: 67  -SSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITDQANQIRRGAQI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D I    +NIS L   VLDEADEML++GF +DI+ IL ++P ++   +FSA
Sbjct: 126 VVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNTPDEKFTWLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   ++T+AK +  +   + + S+N   + + +   +V   DR  A+  +   +    +
Sbjct: 186 TMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGRDRYPALKRLADTNPDIFS 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+    R  + L E  +   AL G+LSQ +R   +   R  + ++ +ATDVAARG
Sbjct: 246 VVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQMLVATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ + L R+     
Sbjct: 306 IDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKIKALERKLQTEF 365

Query: 368 VWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVL--LAKHDPEK--IAAGF 420
           + +  P+   I E     +   ++D    D ++     + ++L  + K D  K  ++  F
Sbjct: 366 LSKKIPTGMEICEIQLHHLANKIKDTEINDEVESYLPAINEILEGVDKEDLIKKIVSVEF 425

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            R         +       ++G DR     R  +    +     GS  + ++VG +   +
Sbjct: 426 TRFF-------DYYNKTRDLNGSDRGERGDREERGKNKAEIPTSGSVRYFINVGERDDYD 478

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              L   L  + G+ ++ +  + V+   +F    A+
Sbjct: 479 WMTLKDFLRNTVGLGKEDVFKVDVKESFSFFNTDAE 514


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L     R
Sbjct: 33  QKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGRAR 92

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA ++
Sbjct: 93  ---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGADVL 149

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 150 ICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFSAT 209

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHG 243
           + P I  LA  + ++  R+ +A        +  R   VA   +D     +LR        
Sbjct: 210 MPPEIQKLADRFLQNPERIEVARPASAAKTVTQR--FVASHSKDYEKRAVLRELVRAQTE 267

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+DV
Sbjct: 268 LKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNLQLLVASDV 327

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 328 AARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 372


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 197/369 (53%), Gaps = 15/369 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   +  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITRGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNA 247
           I  LA ++  + VR+ +A      S I+ R  LVA     +     LR    GA   KN 
Sbjct: 191 IQRLADDFLHNPVRIEVARPASTASTIEQR--LVATGGEGHQKRKTLRRLIRGAEELKNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V++  K LA H F V AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++      R +     A  S+
Sbjct: 309 LDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLV-----ARGDEKALAAIESL 363

Query: 368 VWEPAPSVE 376
           + +P P  E
Sbjct: 364 IGQPIPWAE 372


>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 418

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 188/339 (55%), Gaps = 1/339 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + I ++L E GY   T +Q   +   L+  D+L  AQTG+GKT AF + +   LL+E
Sbjct: 7   DIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPILQ-LLSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          +L + PTRELA+Q+G         TG+   V  GGV+ + +   L+NG 
Sbjct: 66  SHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQISALRNGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +    LN+  ++  VLDEAD MLD+GF  DI+ +L   PKK++ L F
Sbjct: 126 DIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKKKQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA     +   V++   +     I      V   ++++ +V+IL+    K
Sbjct: 186 SATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIYFVDKGNKNSLLVDILKDQSIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L+ H  +  A+ G  +Q  R  AL   ++   RV +ATD+AA
Sbjct: 246 TALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           RGID+ +LE VI+ E+S+  E  +HR GRTGRAG KG +
Sbjct: 306 RGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTA 344


>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
 gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 458

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 192/336 (57%), Gaps = 8/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  
Sbjct: 10  PELL-DNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKRF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GAH
Sbjct: 69  RIQ------SLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+  + L++  +  +VLDEAD ML++GF  D+++I+   P++R+ L+FS
Sbjct: 123 IIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  +A+    + V V + S +   S   +   + +  DR  A+  +L  H  ++
Sbjct: 183 ATFPKQIQKIAEEIMYEPVMVKVTSTHDSSSIDQHFYQIDSNKDRQKALRLLLLQHRPES 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAAR
Sbjct: 243 AVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  L++VI+ E + + E  +HR GRTGRAG KG
Sbjct: 303 GLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKG 338


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 8/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   + +A+    Y + T VQE ++   L  KDV+V +QTGSGKT AF + +   
Sbjct: 6   FENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPICDL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + ++      P  L I PTRELA+QV  ++  L     + V+   G  S + + ++L
Sbjct: 66  VDWDENK------PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEKEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR+ DH+     + S +K +++DEADEML +GF + IE I+   P +R 
Sbjct: 120 KQKTHVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDERT 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++ SAT+   I  L   Y K+ V   I  EN+    I      V  +D+ N + +I   
Sbjct: 180 TILLSATLPKDIAVLCDKYMKNPVYAEIEEENKAIDRIVQERYEVDENDKLNLLRDITTL 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FCST+         LA+  +    + G + Q +R   +   + G  R  +AT
Sbjct: 240 ENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ D+ LVI+ ++  + E+ +HR GRTGR  R G ++  +  +  +  + + +
Sbjct: 300 DVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDDIHK 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386
                +  +  P  EA+++++ + I
Sbjct: 360 YIGKEIELKERPDKEAVKDKEQEFI 384


>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/387 (36%), Positives = 214/387 (55%), Gaps = 17/387 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+SE+GY + T +Q   +   L   D+L  AQTG+GKT  F L L   L A   +  
Sbjct: 12  IVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQRLSAMPRQKI 71

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
               P+ AL +APTRELA QV   +   Y K   + + CI GGV ++ +   L+ G  I+
Sbjct: 72  NGHVPIRALILAPTRELAAQVEESVRQ-YGKYLPLTSACIFGGVGINPQITLLKRGVDIL 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++   +N+ H++ +VLDEAD MLD+GF  DI  +L + P KR+ L+FSAT
Sbjct: 131 VATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQNLLFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAK 245
            +  I  LA +   +   + +A   R++S ++  A  +   DRD     + ++++ H  K
Sbjct: 191 FADEIKKLADSLLNNPALIEVA---RRNSTVEVIAQKIHPVDRDKKHPMLAHLIKTHQWK 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++  + L       +A+ G  SQ  R+ AL   +DG+    IATD+AA
Sbjct: 248 QVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALIATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-R 361
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    +++    ER   R
Sbjct: 308 RGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHDIERFIKR 367

Query: 362 EANVSVV--WEPAPSV--EAIRERDAQ 384
           E  V V+  +EP P+   + I+ R  Q
Sbjct: 368 EIPVEVIAGFEPDPTAKPQPIQLRSGQ 394


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 188/341 (55%), Gaps = 10/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T VQ   + P LR +DV+ +AQTG+GKT AF       LL   D    A 
Sbjct: 57  AVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAF-------LLPSLDGLPHAQ 109

Query: 74  A---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A   PL L + PTRELA Q+      + A+TG   A  +GGV    +RR L+ G  ++V 
Sbjct: 110 AGQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRRGCDLLVA 169

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     ++  ++ +VLDEAD MLD+GF   +  I+  +P+ R+ L+FSAT+ 
Sbjct: 170 TPGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTLLFSATLD 229

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +T+  ++  KD VRV IA +      I+   + V+   +  A+ ++L   GA+  IVF
Sbjct: 230 GHVTSNTESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAKHAALTHVLENEGAERVIVF 289

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +       + L    F    + G  SQ +R  AL+  R+G   V +ATDV ARGID+
Sbjct: 290 CRGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVATDVLARGIDI 349

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           PD+  V++ ++  + E+ +HR GRTGRAG  G ++  + ++
Sbjct: 350 PDVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTED 390


>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2083]
 gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 495

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 199/355 (56%), Gaps = 15/355 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ + GY + T +QE  + P L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLGKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R   A  P +L + PTRELA QV    + +      +  A+ IGGVS   + R +  G  
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQDRLIDKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+    L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FS
Sbjct: 127 VLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNIL 239
           AT++P I  +   +  +  RV +A +     +I+   ++   S +D        A+  ++
Sbjct: 187 ATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTEKRKALRKLI 246

Query: 240 RYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              G    NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   R+G  R 
Sbjct: 247 DAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFREGGLRF 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
            +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G +V + +P++
Sbjct: 307 LVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMICVPRD 361


>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
 gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
          Length = 433

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E+E  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P+ ++ ++
Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y K+   + I S     ++I  R +      + +A+ +++     
Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRHVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + +  IATDVA
Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++ FV P++
Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 209/375 (55%), Gaps = 10/375 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             ++P    + L E GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ L   + 
Sbjct: 7   LNSLPDSQLDNLREMGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHI- 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
            ++  F       AL + PTRELA QV   L  L  + +   ++ +C GG  +  +R  L
Sbjct: 66  -DSAHFQTQ----ALILCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMSAQRDSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HIVVGTPGR+ DHI+ + L +  L+ +VLDEAD ML++GFRDD+E I+ ++P  R+
Sbjct: 120 VHAPHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    I  L++ +Q++A+ V +  E  +   I+ + +  +  ++ + ++++L  
Sbjct: 180 TLLFSATWPEGIAALSQRFQREALSV-VTEEVSELPAIEQQFIEASHGEKLSLLISLLSE 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VFC+T+         L       + L G+L Q++R   L    +G  RV +AT
Sbjct: 239 RQPSSCVVFCNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L LV++ +L+ +PE  LHR GRT RAG +G +V  +  +   RA  L  
Sbjct: 299 DVAARGLDIKLLSLVVNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALED 358

Query: 362 EANVSVVWEPAPSVE 376
                + W  A S++
Sbjct: 359 FLQQKLPWVAASSLK 373


>gi|238787599|ref|ZP_04631397.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
 gi|238724386|gb|EEQ16028.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
          Length = 609

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 207/400 (51%), Gaps = 19/400 (4%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TG 102
           AQTGSGKT AFGL L   +  E        AP  L +APTRELA+QV   L        G
Sbjct: 2   AQTGSGKTAAFGLPLLHNIDPE------LKAPQVLVLAPTRELAIQVAEALTSFSKDIKG 55

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V V    GG     + R L+ G  +VVGTPGRL DH++   LN+S+LK +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E IL   P + +  +FSAT+  AI  + + + K+   V I S      DI   
Sbjct: 116 MGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQV 175

Query: 223 AVLVALSDRDN-AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              V    R N A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 YWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQA 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L+ ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           G ++  +    +R  + + R   +++     P+ + + ER   +          ++  + 
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAQLLSERRLAKFAAK--VSQQLESSDL 353

Query: 402 KMVDVLLAKHDPEK------IAAGFLRI---HRAGLCAPE 432
            M   LLAK  PE+      +AA  L++    R  +  PE
Sbjct: 354 DMYRALLAKLQPEEEFDIETLAAALLKMAQGERPLILPPE 393


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L + GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   
Sbjct: 23  PAVLAN-LVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR-- 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF       A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH
Sbjct: 80  RFDVQ----AMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAH 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+FS
Sbjct: 136 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L++   ++   V +  E    S I  R   V   +R +A+  +L+++   +
Sbjct: 196 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPVS 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 255 TLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++
Sbjct: 315 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 353


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 209/370 (56%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q   ++L + GY   T +QE  +   L  KD++  AQTG+GKT AFG+ +  ++  + 
Sbjct: 11  ISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIPIVESVNTKQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV +E++ L     V V    GG S+  +   L+ G  
Sbjct: 71  KKIQ------ALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQIDFLKKGND 124

Query: 127 IV-VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V VGTPGR+ D +    L + ++K  VLDEAD ML++GF +DIE I+   P+ R+ L+F
Sbjct: 125 VVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPEDRQNLLF 184

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA+ +  +D   + +  +      I      V   ++ N ++ +L  + A
Sbjct: 185 SATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIEVLSQNQA 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+    + ++ L++  F V A+ G+ SQ++R   L   R G+ ++ +ATDVA
Sbjct: 245 EKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--E 362
           ARG+D+  +ELVI+  L  N E+ +HR GRTGRAG++G ++ +   +  +  +++ +  +
Sbjct: 305 ARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQQILQKTK 364

Query: 363 ANVSVVWEPA 372
           AN+ V+ E +
Sbjct: 365 ANIEVINEAS 374


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 190/347 (54%), Gaps = 3/347 (0%)

Query: 1   MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +  +  + +AL E  Y   T +Q   +   L  +DVL  AQTG+GKT A  L +
Sbjct: 1   MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L  +N R S    PLAL +APTRELA+Q+G   +       +   +  GGV    + 
Sbjct: 61  LNQL-GKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GAHI+V TPGRL D +    + ++ L+  VLDEAD MLD+GF  D++ I+   P 
Sbjct: 120 KALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPT 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT++P IT LA +     V VN+  +      I  + + V  + +   +  I
Sbjct: 180 QRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQPLLQKI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A+VF  T+ + +  ++ L    F+  A+ G  SQ  R  AL+  R  + +V 
Sbjct: 240 LGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+  +  VI+ +L   PE  +HR GRTGRAG  G+++
Sbjct: 300 VATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAI 346


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 195/370 (52%), Gaps = 11/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + G+   T +Q   L   L   DV+  AQTG+GKT AF + L   L        
Sbjct: 15  INRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLLENL-------E 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P AL I PTREL +QV  E+  +     V V    GG  +  +  +L+ G H++V 
Sbjct: 68  PERVPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELRRGVHVIVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    +++  +  VVLDEADEML++GF DDIE IL   P++R+ ++FSATIS
Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATIS 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +  +A+ Y +      I    ++HS  ID         D+   +  IL  +  +  ++
Sbjct: 188 KPVLRIAERYMRSP---QILRVEKKHSPRIDEFYFKTREEDKVELLDWILTSNDIRMGLI 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V R  K L+   + V  + G+LSQ +R   ++  R GR  + IATDVAARGI 
Sbjct: 245 FCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLIATDVAARGIH 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +PD+E+V++ +L    E  +HR GRTGRAG  G S  ++      R  R+       +  
Sbjct: 305 VPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRIQSFTGKRIKK 364

Query: 370 EPAPSVEAIR 379
              PS + IR
Sbjct: 365 SNMPSPQEIR 374


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 192/359 (53%), Gaps = 6/359 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY + T++Q   +   L  +DVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 15  AVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    E       + VA+ IGGVS   + + L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLDRGTDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 132 RLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250
             L + + ++  R+ +A  +    ++  +       D D  +       GA   +NAIVF
Sbjct: 192 QRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLEGAEDLQNAIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  +S   + L  H + V AL G++ Q+ R   L+  R G  ++ +A+DVAARG+D+
Sbjct: 252 CNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           P++  V + ++  N E+ +HR GRTGRAGR G +  ++ ++ Q+    +    N S+ W
Sbjct: 312 PEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAIEELTNQSIEW 370


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 184/339 (54%), Gaps = 10/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDRF 69
           A++ERGY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     A N++ 
Sbjct: 15  AVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERLRTGTPARNNQV 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA QV   +        +  +V  GGV ++ + + L+ G  ++V
Sbjct: 75  R------ALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRLRGGCDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  IL   P KR+ LMFSAT 
Sbjct: 129 ATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQNLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           SP I  LAK    D V V+I+  N     +      V    +   + ++++ HG    +V
Sbjct: 189 SPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQEHGWFQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++  K L  +  +  A+ G  SQ  R+ AL   ++G+ R  +ATD+AARG+D
Sbjct: 249 FSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRALVATDIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ +L + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLV 347


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 210/389 (53%), Gaps = 27/389 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L        ++ +P S  + A
Sbjct: 2   GFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLV-------EKINPESPNIQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGTPGRL D
Sbjct: 55  IVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  + + +  +  VVLDEADEML++GF +DIE IL + P + + L+FSAT+   I  +A
Sbjct: 115 HINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  +   V + ++    S+I    + V    + + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L    +    + G+L+Q +R  AL+  + G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R            ++E
Sbjct: 295 NFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKDMLR------------AIE 337

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              +R   R ++ P   ++I+G ++  VD
Sbjct: 338 QTTKRKMDR-MKAPTLDEAIEGQQQVTVD 365


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 170/539 (31%), Positives = 276/539 (51%), Gaps = 54/539 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +   + 
Sbjct: 22  PRVL-RAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P AL + PTRELA+QV    GR   +L   + + V    GG S   +   L+ 
Sbjct: 80  -----KVPQALVLVPTRELALQVAEAFGRYGAYL---SQLNVLPIYGGSSYAVQLAGLRR 131

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ +++ 
Sbjct: 132 GAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVA 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ PAI  L+  Y  D   V   ++     +I    + VA   + +A+  +L    
Sbjct: 192 LFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEP 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +ATDV
Sbjct: 250 FEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           AARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+ +   +  E+  
Sbjct: 310 AARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKAT 369

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ------GDE--KKMVDVLLAKHD 412
           R+   ++     P+VE +   + QR+ +   F DSI       G E  +++V     +HD
Sbjct: 370 RQ---TLTEAQLPTVEDV---NTQRVAK---FADSITNALGGPGIELFRRLVKEYEREHD 420

Query: 413 PE--KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                IAA      R G   L AP+   P+S  +   R     R  +     R +    +
Sbjct: 421 VPMADIAAALAVQCRGGEAFLMAPDP--PLSRRNRDQRRDRPQRPKR-----RPDL---T 470

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++VG + K     ++  +    G++R   G IR+ PD + VE+ A    L R T+K
Sbjct: 471 TYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPA---KLPRATLK 526


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 198/364 (54%), Gaps = 8/364 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L+  GY + T VQE +L   L  ++V+V +QTG+GKT AF + +   ++ E +   
Sbjct: 22  ITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIPVCEQIVWEEN--- 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + P+RELAVQV +E+  +  K  + V    GG  + ++ + L+   HIVVG
Sbjct: 79  ---LPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQKTHIVVG 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L ++ ++ +V+DEAD MLD+GF D++  I+   P+KR+ L+FSAT+ 
Sbjct: 136 TPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLLFSATLD 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA+   KDAV V +  E      I      VA   +  A   +L     + A++F
Sbjct: 196 EDVKNLAEETVKDAVSVFLEQEGETPLPIRQSVYGVAQDQKYTAFKRVLMKENPERAMIF 255

Query: 251 CSTRASVS-RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           C TR  V   F K+  + +F    + G++ Q+ER   +   R G  R  IATDVAARGID
Sbjct: 256 CGTREMVQVLFQKLRRDRIF-CGMIHGDMEQKERLKNVDAFRRGGFRYLIATDVAARGID 314

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
             D+ LV++ +     E  +HR GRTGR G+ G +  ++ ++  R   +      V +  
Sbjct: 315 FEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEAYVGVPLPV 374

Query: 370 EPAP 373
            P P
Sbjct: 375 LPCP 378


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/404 (32%), Positives = 221/404 (54%), Gaps = 27/404 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L       
Sbjct: 26  NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLV------ 79

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +P S  + A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+  
Sbjct: 80  -EKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +I+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+
Sbjct: 139 PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 198

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     
Sbjct: 199 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSP 258

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVA
Sbjct: 259 ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVA 318

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++ F+ P     R + + R  
Sbjct: 319 ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITP-----REKSMLR-- 371

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                     ++E   +R   R +++P   ++++G ++  V+ L
Sbjct: 372 ----------AIEQTTKRKMDR-MKEPTLDEALEGQQQVTVERL 404


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 190/336 (56%), Gaps = 5/336 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+S+ GY   T++QE  +   L  +D++  AQTG+GKT AF + L   +L+E  +  
Sbjct: 12  ILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQ-ILSETPK-- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              +  AL + PTRELA+Q+   +E  Y+K   +  + I GGV   ++ R L  G  I++
Sbjct: 69  KGKSVRALILTPTRELAIQIQENIEQ-YSKFLNIKHLSIFGGVPQGKQERALNQGVDILI 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D ++   L++S ++ +VLDEAD MLD+GF +D++ IL   PKKR+ L FSAT+
Sbjct: 128 ATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +I   A+    +   V +   +     I+     V  +D+ N ++NIL+      +++
Sbjct: 188 PNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDTSELRSLI 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  K L        A+ G  SQ  R  AL+  +D R  V IATD+AARGID
Sbjct: 248 FTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATDIAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  VI+ EL + PE  +HR GRTGRAG  G ++
Sbjct: 308 IDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAI 343


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 192/347 (55%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    +  AL +  +   + +Q   +   L  +D +  AQTG+GKT AF L +   L   
Sbjct: 12  NFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPILQNL--- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
               S      AL +APTRELA+QV  + E L A +  + VAV  GG    R+ + L+ G
Sbjct: 69  ---SSSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQLKQLRAG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+    L + +L+  +LDEADEML +GF +DIE I+   P+K+++ +
Sbjct: 126 AQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLPEKKQIGL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  +   + I +E      I+ R +  +   + +A++ +L     
Sbjct: 186 FSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFLFASGHQKYDALLRVLAVEDY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +   + +A+ G+++Q  R   +   R G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ARG+D+  +  VI+ +L  + E  +HR GRTGRAGR G+++ FV P+
Sbjct: 306 ARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPK 352


>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 216/391 (55%), Gaps = 19/391 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A  + GY   T +Q+  L   L++KD++  A+TGSGKT+AFGL +   LLA    + 
Sbjct: 23  LSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLPILQHLLANPQPY- 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTREL VQ+    + + A   +   V +GG+    + + L    HI++G
Sbjct: 82  -----YALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKALAQKPHIIIG 136

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPG++  H+   KG N+  LK +VLDEAD++L++ F  +I  ILD  PK+R   +FSAT+
Sbjct: 137 TPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKERNTYLFSATM 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  ++ L +   KD V++ ++S+ +  S +    + V    ++  +V +L       +IV
Sbjct: 197 TNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKYKETYLVYLLNELAGLTSIV 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T     + T +L    FQ +A+ G++SQ +R ++    +   + + IATDVA+RG+D
Sbjct: 257 FVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIATDVASRGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL------- 359
           +P ++LV++ ++  N +  +HR GRT RAG+ G ++ ++ Q    M ++ E+L       
Sbjct: 317 IPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKIEQLIEKELSQ 376

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQ 388
               E++V V +E       I  ++ + +L+
Sbjct: 377 YPLEESDVMVFYERVQEANRIATQELKDLLE 407


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 190/345 (55%), Gaps = 2/345 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +        +  AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 445

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 191/345 (55%), Gaps = 8/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP++I EA +  G+   + +Q A +   L  +D++  AQTGSGKT AF L +  TL A  
Sbjct: 19  IPELI-EACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTLFANP 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A  IAPTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 78  QHL------YACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPH 131

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG N+ HLK +V+DEAD +LDL F  +IE +L   P++R   +F
Sbjct: 132 VIICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLF 191

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +    + V+V +A++      +           ++  +  +L     +
Sbjct: 192 SATMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSGQ 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T AS  +   +L    F+ V L G+L+Q +R  AL   + G   + IATDVA+
Sbjct: 252 TCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVAS 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 312 RGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQ 356


>gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40]
 gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 595

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 194/346 (56%), Gaps = 10/346 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +AL++ GY   + +Q   +   L  +D+L  AQTG+GKT AF L + + L L++    
Sbjct: 17  ILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILNNLDLSQK--- 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               AP  L +APTRELA+QV    + + +   G  +    GG    ++ R L+ G H++
Sbjct: 74  ----APQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALKRGVHVI 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   L +  LK +VLDEADEML +GF DD+E++L  +P  R++ +FSAT
Sbjct: 130 VGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQIALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  +A  Y  D   + I  + +    I  R   V+   + +A   IL        I
Sbjct: 190 MPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHHKLDATTRILEAEEFDAMI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     + LA   +   AL+G++SQ  R   ++ ++ G+  + +ATDVAARG+
Sbjct: 250 IFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDILVATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           D+  +  V++ ++  + E  +HR GRTGRAGR G ++ FV P+ M+
Sbjct: 310 DVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMR 355


>gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 534

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 196/362 (54%), Gaps = 9/362 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  ALSE G  +   +Q A +   L  +DVL  AQTGSGKT+AFGLA+ + L   
Sbjct: 50  GLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAMLARLADG 109

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P AL + PTRELA+QV   L  L    G+     +GG++  R+   L  G 
Sbjct: 110 KAR---PKRPRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQADALSRGV 166

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R    ++     + LDEAD+M D+GF   +  I+D +P+  + L+F
Sbjct: 167 DLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQGGQRLLF 226

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K Y  D V  ++A      + +D+  + V+  D+ + I  I    GA+
Sbjct: 227 SATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQDKQDVITQI----GAR 282

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   I+F  T+  V R  + L E      AL G  +Q +R+  L   ++G   V +ATDV
Sbjct: 283 DGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLVATDV 342

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGI + D+ LV+H + +++ ++ LHR+GRT RAG  G+ V V   + +R   RL   A
Sbjct: 343 AARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTVATHDQRRMVRRLTDRA 402

Query: 364 NV 365
            V
Sbjct: 403 GV 404


>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 443

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/341 (37%), Positives = 188/341 (55%), Gaps = 3/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I  A++ERGY   T +Q   +   L   D+L  AQTG+GKT +F L L   L +E +   
Sbjct: 12  IIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLLHRLSSEKNVKV 71

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            S    P+ AL + PTRELA QV   +        +   V  GGV ++ +++ L+N   I
Sbjct: 72  TSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRLKNRVDI 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH++   LN+SH++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F A
Sbjct: 132 LVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAILPKQRQNLLFFA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA     +   + +A  N     I  +   V    +   + +++R       
Sbjct: 192 TFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLAHLIRRDNWYQV 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    R  K L E   Q +A+ G  SQ  R+NAL   ++G  +V +ATD+AARG
Sbjct: 252 LVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVATDIAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ +L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 312 LDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLV 352


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 203/374 (54%), Gaps = 7/374 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L E+GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L         +S
Sbjct: 71  TLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLEGR------SS 124

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P  L +APTRELA+QV    + +      + V    GG     +   L+ G  +VVGTP
Sbjct: 125 KPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKRGVDVVVGTP 184

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+   
Sbjct: 185 GRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPNE 244

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K Y ++   + I +++R+   I  R++ +  S +  A+  +L     +  I+F  
Sbjct: 245 IRRLSKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHKIEALNRVLEAVTGEGVIIFAR 304

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A      + L      V  L+G++ Q +R   +  +R G   + +ATDVAARG+D+  
Sbjct: 305 TKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVDR 364

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R  N S+     
Sbjct: 365 IGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMDI 424

Query: 373 PSVEAIRERDAQRI 386
           PS   I +    R+
Sbjct: 425 PSNAEINQSRLDRL 438


>gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 618

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 199/345 (57%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL++ G+   T+VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALADQDTF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   +R    + P  L I+PTRELA QV ++ +  +    GV +A  +GG+   ++ + L
Sbjct: 72  LPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISELALNRKQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+   KD +R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLE 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAI 355


>gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 411

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 187/331 (56%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY N T +QE  +   L +KDV+ SAQTG+GKT AF L +   L  + D      
Sbjct: 15  AIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQLLYDKQDAAKNQK 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q+    +     T +   V  GG S+  ++  L+ G  I++ TPG
Sbjct: 75  KVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDVLRKGVDILIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +N+ +++ +VLDEAD MLD+GF DD++ I    P ++++L+FSAT+   +
Sbjct: 135 RLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAEKQILLFSATMPYKV 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK    +  RV ++  +   ++I+     V    +    +++LR       I+F  T
Sbjct: 195 EQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLLRNTVKGKIIIFRRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V +  K L  + ++  ++ G+ SQ  R  AL   +     + IATDVAARGID+ ++
Sbjct: 255 KYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNILIATDVAARGIDIENV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           + VI+ ++ + PE  +HR GRTGRAG  GM+
Sbjct: 315 DAVINFDMPNVPETYVHRIGRTGRAGNTGMA 345


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 234/463 (50%), Gaps = 24/463 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+ N T +Q+  +   L   DV+  +QTG+GKT A+ L L    L   DR S +
Sbjct: 16  QHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLPL----LERIDRHSRS 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV + ++       + +    GG S+ R+ R L+ G  IVVGTP
Sbjct: 72  VQ--ALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQIRSLERGVQIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +  K L++  L+  VLDEADEML +GF DD++ IL  +P  R+   FSAT+ P 
Sbjct: 130 GRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTPSTRQTACFSATMPPE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  L   + K  V V+          ID    +V     +  A+  IL     ++AI+F 
Sbjct: 190 IKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKALQPILEIEDPESAIIFV 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ ++ +ATD+AARG+D+ 
Sbjct: 250 RTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIKLVVATDIAARGLDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAE-RLFREANVSV 367
           DL  VI+ +L  N E  +HR GRTGRAG+ G ++ +I    + M R+ E R+    +VS 
Sbjct: 310 DLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRMLRQIEHRVGHRLDVSQ 369

Query: 368 VWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  P  S VEA R    Q  +++ L  + +      +V  L A++DP  IAA  L++   
Sbjct: 370 L--PDRSLVEAKRLSKLQTQVKETLAGERM-ASFLPLVRELSAEYDPLAIAAAALQMVYD 426

Query: 427 GLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
             C          P+E  P  ++  + R+    +  K     R
Sbjct: 427 QDCPNWMKTDWEVPKETAPKPMLKQQRRYNKSGKPSKFEKSGR 469


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 207/371 (55%), Gaps = 7/371 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + G+   + +Q  ++   L   DV+  A+TG+GKT+A+G  + +   + ND   
Sbjct: 12  ILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPIINNF-SSND--- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+QV  EL  +   + V +    GGV + R+ + ++ G  IVVG
Sbjct: 68  --GKVFCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGVDIVVG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+   L++  ++ +V+DEADEM+D+GF DDI+ I++ + K+R+ +MFSAT+ 
Sbjct: 126 TPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQTMMFSATMP 185

Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  LAK Y K DA  ++I  +    S + +    V   +R  ++  IL      + I+
Sbjct: 186 DEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEPSSTII 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V   T+ +    + V  + G++SQ +R N L+  ++G     +ATDVAARGID
Sbjct: 246 FCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++  VI+  L  + E+ +HR GRTGRA R G++  ++        +R+ +     +  
Sbjct: 306 IENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATRCKIKR 365

Query: 370 EPAPSVEAIRE 380
           +  P+V+ I E
Sbjct: 366 KELPTVDDILE 376


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 195/349 (55%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L +  TLL +  
Sbjct: 11  PRVL-QAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPMI-TLLGQGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    E     + +  A+ IGGVS   + + +  G  +
Sbjct: 69  --AKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+   +SA
Sbjct: 127 LIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTFFYSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-------ILR 240
           T++P I  +   +  +AV++ +A +      I+   + +  + +D +  +       ++R
Sbjct: 187 TMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADKRAVLRALIR 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G    NAI+FC+ +  V   +K L +H F    + G+L Q  R+  L   RDG   + 
Sbjct: 247 AEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDGFRDGTVHLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++ S+PE+ +HR GRTGRAGRKG +  +
Sbjct: 307 VASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTI 355


>gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
 gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 213/379 (56%), Gaps = 15/379 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL + G+ + T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 16  ESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLHSLAGQDTF 75

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   +R    + P  L I+PTRELA QV ++ +  +    GV +A  +GG+   ++ + L
Sbjct: 76  LPFKERMRAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGMPFAKQIQQL 135

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I + +  +++
Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAISELAANRKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+   +D +R+ I + +  ++DI            +   + + L 
Sbjct: 195 TLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLS 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+G+A++ +A
Sbjct: 255 DESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGKAKILVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQRRAER 358
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +    +  + RA  
Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRERGKIRALE 374

Query: 359 LFREANVSVV----WEPAP 373
            + EA +SV      EP+P
Sbjct: 375 DYLEARLSVSEIEGLEPSP 393


>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 549

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 191/344 (55%), Gaps = 10/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I   L++      T VQ   + P L ++DV+  AQTG+GKT+AF L +   +  E 
Sbjct: 10  ISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E + L    G+ +    GG  V ++ R L+   H
Sbjct: 70  PTIQ------ALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKGSIH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL DH+R K +N+  L  +VLDEAD+ML +GF  D+E I+   PK+R+ + FS
Sbjct: 124 IIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGA 244
           AT+   + TLA+ Y KD V++ + S+     +I  R V++  +DR   + +  +   +  
Sbjct: 184 ATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEI--RQVVIETTDRGKQDLLCQLFDEYNP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC T+       + L    +    L G+L+Q +R   ++  +  + +  +ATDVA
Sbjct: 242 FMAIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  +  + + ++  + E+ +HR GRTGRAG  GM++  +
Sbjct: 302 ARGLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFM 345


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 213/367 (58%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           R        AL + PTRELA QV  ++  L  +T   + V    GG+ +  +   L++GA
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+F
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H   
Sbjct: 185 SATYPASIEQVAQSVTRNAMMIKVAATHDTSSIRQYFYNVDGSTARDEALETLLLHHQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 366 SVVWEPA 372
           ++  EP+
Sbjct: 365 AI--EPS 369


>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
 gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
          Length = 460

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 211/372 (56%), Gaps = 10/372 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           R        AL + PTRELA QV  ++  L  +T   + V    GG+ +  +   L++GA
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+F
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   
Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVEATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 366 SVVWEPAPSVEA 377
            +V    P   A
Sbjct: 365 EIVPSSLPQPAA 376


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 190/355 (53%), Gaps = 14/355 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L   ++
Sbjct: 53  FDVRPEIVA-ALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHRVI 111

Query: 64  AEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           A      DR      P AL + PTRELAVQV  +L        V +    GG +   +  
Sbjct: 112 APGEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEPQVE 171

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ GA +VVGTPGR+ D +  + L + H   VVLDEADEMLDLGF  D+E +L ++P  
Sbjct: 172 ALQRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAATPPN 231

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQH----SDIDYRAVLVALSDRDN 233
           R  ++FSAT+  A+  +A+ Y  Q   +R +   +  Q       + YRA  +   D+  
Sbjct: 232 RHTMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHAL---DKVE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL+  G    IVF  T+ + ++    L E  F   A+ G+L Q  R  AL+  R G
Sbjct: 289 LLARILQARGRGLTIVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V +ATDVAARGID+ D+  V++ +   + +  LHR+GRTGRAG KG +V  +
Sbjct: 349 KVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFV 403


>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
 gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
          Length = 626

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/518 (28%), Positives = 262/518 (50%), Gaps = 32/518 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDV-LVS-AQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+++ G+   + VQE  + P L E+D  LV+ AQTG+GKT AFG  +    L + D  S
Sbjct: 15  QAITDMGFETPSEVQEQAI-PILLEEDTDLVALAQTGTGKTAAFGFPM----LQKIDVAS 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             +  L L+  PTREL +Q+  E++  Y K   G+ V    GG S+  + R ++ GA I+
Sbjct: 70  RTTQGLILS--PTRELCMQITNEMKS-YGKHMKGLNVVAIYGGASISDQARQIKKGAQII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D I  + ++IS ++  VLDEADEML++GF +DI  IL  SP+++   +FSAT
Sbjct: 127 VATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHSPQEKSTWLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   + ++AK +      + + S+N    ++ +   LV   DR  A+  +   +    ++
Sbjct: 187 MPREVASIAKEFMYQPQEITVGSKNTGSENVTHEYYLVNARDRYQALKRLADANPEIFSV 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+    +  + L +  +   A+ G+LSQ +R   ++  R  + ++ +ATDVAARGI
Sbjct: 247 VFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQMMVATDVAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ ++  VI+ +L    E   HRSGRTGRAG +G+S+ ++ ++  R+   + ++      
Sbjct: 307 DVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKIRSIEKKIQKKFE 366

Query: 369 WEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +  PS   I E+    +   ++D    D I+      ++  L     E++   F  +  
Sbjct: 367 VKEVPSGMEICEKQLMHLANNIKDTEINDDIEA-YLPAINESLEDFSKEELIKKFFSVEF 425

Query: 426 AGLC-APEEITPVSLVSGRDR-FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                   +   +++  G ++ +RDD+              GS+ F L+VG K       
Sbjct: 426 TRFYNYYNKAKDINVKPGHEKDYRDDT--------------GSTRFFLNVGEKDDFNWMS 471

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
           L  +L     + +  +  + V+   +F  V     DL+
Sbjct: 472 LKDLLKEVLNLGKDDVYKVDVKDSFSFFNVDEKHKDLV 509


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 192/333 (57%), Gaps = 12/333 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPAS 73
           L + GY  +T +Q+  L   L   D++  A+TGSGKT AFG+ L + +   N R F   +
Sbjct: 18  LQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLTKI---NPRDFGTQT 74

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               + I PTREL+ QV  E+  L  Y +   VV +C GG S+  +   L++GAHIVVGT
Sbjct: 75  ----MVICPTRELSTQVATEIRRLARYQQNIKVVVLC-GGQSIGPQIGSLEHGAHIVVGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R K L++S L  +VLDEAD MLD+GF  DIE I+   P  R+ L+FSAT   
Sbjct: 130 PGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQTLLFSATYPD 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I TL+ ++Q+  V +++ S  R +  I  +  +    +R   +  +L  +  ++A++FC
Sbjct: 190 KIKTLSSSFQRSPVEISVESV-RGNEKIHQQLFICDKRERLAGLQRLLMNYPIESAVIFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T   V      L +      A+ G+L Q++R   L    +    + +ATDVAARG+D+ 
Sbjct: 249 NTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLVATDVAARGLDIE 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           DL  VI+ EL    +  +HR GRTGRAG++G++
Sbjct: 309 DLPAVINFELPREADVYIHRIGRTGRAGKEGLA 341


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 200/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 61  VAQMLEREARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    I      +A +++ + ++ +
Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 240 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F  P  M
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/393 (32%), Positives = 206/393 (52%), Gaps = 18/393 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I + +   L ++G    T VQE  + P    +DV+  AQTG+GKT+A+ L L +     
Sbjct: 8   GISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLA----- 62

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R  P  +A  AL IAPTRELA+Q+ R  E L    G+   V  GG  + R++  L+  
Sbjct: 63  --RIKPQGAAAQALVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRRS 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+GTPGRL DH+R   L +  +  VVLDEADEML +GF +D+E +L ++ +  ++ +
Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L K +  +   + +A E    + I+   + V+  D+ + +   +     
Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC+T+         LA+  + V ALSG+L+Q +RS  L+  R  + ++  ATD+A
Sbjct: 241 YLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359
           ARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  ++     
Sbjct: 301 ARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALK 360

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
              R   V     PAP      E DAQ+    P
Sbjct: 361 ACLRRDVVKKKKRPAPPAG---EGDAQKKAHPP 390


>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 513

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 195/360 (54%), Gaps = 11/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +        +R  P 
Sbjct: 16  EHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPQ 68

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  A+ + PTRELA+QV   +      +G+      GG S+ R+   L+ G HIVVGT
Sbjct: 69  QKAVQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    L +  +K  VLDEADEML +GF DD+E IL  +P++R+  +FSAT+ P
Sbjct: 129 PGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQTALFSATMPP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           +I  L   + +  V V +       + I+  A L+     +  A+  IL     + A++F
Sbjct: 189 SIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPETALIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR + +  T  L      V    G+LSQQ R   L   R  + R  +ATD+AARG+D+
Sbjct: 249 VRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR +++F E +V   W+
Sbjct: 309 DQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV-QPFERRKQQIF-ERHVRQNWQ 366


>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 402

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 186/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL    +   T +Q   + P L  +D+L  AQTG+GKT AF L L   L+ + +R  
Sbjct: 15  ILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQHLMQKRER-P 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A +  AL +APTRELAVQ+   L  L  +  +   + +GGV    + + +Q GA IV+G
Sbjct: 74  RAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQRMQRGADIVIG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+CD +    L +  +   VLDEAD MLDLGF  DI  +L S P+KR+ L+FSAT+ 
Sbjct: 134 TPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKRQSLLFSATMP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   ++  RV IA E      I      +  + +   +  +L     +  IVF
Sbjct: 194 GEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVHFIESTGKRVLLTRLLADRALEKVIVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L E      A+ G  SQ  R  AL+  R G ARV +ATD+AARGID+
Sbjct: 254 TRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARVLVATDIAARGIDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +  V++ EL + PE+ +HR GRT RAG++G+++
Sbjct: 314 AGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAI 348


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 192/352 (54%), Gaps = 8/352 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +  A+ E G+   T +Q   +   L  KDV   AQTG+GKT AFGL L 
Sbjct: 1   MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                  ++        AL I PTRELAVQ G EL  L    G+      GG S+  + +
Sbjct: 61  -------EKVHETGGVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIK 113

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    +V+GTPGR+ D I+   L +++++ +VLDEADEML +GF +DIE I+   P +
Sbjct: 114 LLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTE 173

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +A N+  D   V++ ++      ID         ++ + +   +
Sbjct: 174 RQTLLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLIDQYYSRCKDYEKFDLLTRFI 233

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V    + L E  +    + G+LSQ +R   L+  ++G+  + +
Sbjct: 234 DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILV 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GMSV  +  N
Sbjct: 294 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSN 345


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 201/379 (53%), Gaps = 16/379 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GG     +   L++GAHI+VGTPG
Sbjct: 75  --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD ML++GF+D ++ I+D +P  R+ L+FSAT    I
Sbjct: 133 RVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTLLFSATYPTQI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++AK   ++ V V + S +   S   +   + +  DR  A+  +L  H  ++ ++FC+T
Sbjct: 193 ASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVIFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      +  L ++ F  +AL G+L Q+ER   L +  +    + +ATDVAARG+D+ +L
Sbjct: 253 KREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + VI+  L+ + E  +HR GRTGRAG KG++  +       +   L    +  +  E  P
Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALP 372

Query: 374 SVEAIRERDAQRILQDPLF 392
                    A+ +L  P F
Sbjct: 373 ---------AEHLLDQPTF 382


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L+ KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFSATLPKDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    +   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +QE  +   L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 16  PKVL-KAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 74  --ARARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQDALIDRGVDV 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 132 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     RV +A +      I+   V+     RD         +  ++ 
Sbjct: 192 TMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQKRKTLRALID 251

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +   A+ G+L Q +R   L   RDG  R+ 
Sbjct: 252 AEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDGFRDGTLRLL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ +
Sbjct: 312 VASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITI 360


>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 537

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/404 (35%), Positives = 212/404 (52%), Gaps = 56/404 (13%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--- 70
           AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF       +L   +RFS   
Sbjct: 64  ALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAF-------MLPAIERFSQLQ 116

Query: 71  -----------------------PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                                  P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 117 KAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTV 176

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD M
Sbjct: 177 S------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRM 230

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I 
Sbjct: 231 LDMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIA 290

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L 
Sbjct: 291 QTVHYVDDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLP 350

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 351 QGARNRTIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 410

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP---APS 374
           R G++V ++    Q   +R ER  R     NV V +EP   APS
Sbjct: 411 RSGIAVSLVHHAEQGALKRIERFVRTPLPVNVVVGFEPRKSAPS 454


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 9/343 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   L   D+L  AQTG+GKT AFG+ L   ++ +      
Sbjct: 14  AETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPLIEKVVDK------ 67

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL +APTRELA+QV  +L        V VA   GG+ + R+ + L+ G  IVVGT
Sbjct: 68  -EGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKKGPQIVVGT 126

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           PGR+ DH+  + L    +K +++DEADEM+++GF DD+ FI+D  P + R+ ++FSAT+ 
Sbjct: 127 PGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQTMLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI TL + + K    V   +       ID    +V   ++     N L  H  + AIVF
Sbjct: 187 KAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQPELAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             +  V + ++  + E+  HR GRTGRAG+KG++V FV P  M
Sbjct: 307 SGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEM 349


>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 518

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 17/370 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   + +QE  + P L  +DV+  AQTG+GKT AF L +  +L  +ND     
Sbjct: 33  KGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHSL--KND----- 85

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
           S+  AL I PTRELA+Q+  E+    ++L  KT     VC+ GG SV ++   ++    +
Sbjct: 86  SSIEALVITPTRELAMQISDEVFKLGKFLKTKT-----VCVYGGQSVKKQLELIEKKPQV 140

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH++ + L       VVLDE+DEMLD+GF DDIE I    P   + L+FSA
Sbjct: 141 LIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTLLFSA 200

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LA     D V + I S +  ++DI  R  ++  ++R+ A+  ++       +
Sbjct: 201 TMPARIKQLADKILYDPVHIKIQSSSTTNADIAQRYYIINENERNEALTRLIDTESPSKS 260

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+         L    ++  AL G++ Q+ R +++Q  +   A + +ATDVAARG
Sbjct: 261 IIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVATDVAARG 320

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ ++  V +  +  N E+ +HR GRTGRAG KG+++ +      +  +++  E N   
Sbjct: 321 LDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQNETNAKF 380

Query: 368 VWEPAPSVEA 377
                PSV +
Sbjct: 381 ELYEVPSVSS 390


>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
 gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
          Length = 460

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           R        AL + PTRELA QV  ++  L  +T   + V    GG+ +  +   L++GA
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+F
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H   
Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 366 SVVWEPA 372
           ++  EP+
Sbjct: 365 AI--EPS 369


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 195/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
 gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
          Length = 470

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 207/355 (58%), Gaps = 10/355 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  Q + ++L+   Y N+T +Q   L   L+ +D++  AQTGSGKT AF L+L + 
Sbjct: 13  FSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L     + S   A   L + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L-----KIS-FFAVQGLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLDS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH++VGTPGR+  H++   L++S LKA+VLDEAD MLD+GF DD++ I+   PK+R
Sbjct: 127 LRHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  ++K +  +   + + S   + +  +Y   +   + +   + ++L 
Sbjct: 187 QTLLFSATYPEEIKQISKQFMNNPQEIRVESPAEEINIEEYFYEVTKQAQKFPLLKSLLL 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + ++FC+TR      T +L E  F  +AL+G++ Q +R  A+    +    + +A
Sbjct: 247 HYRPVSTLIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSILVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+ +L  VI+ +L+ + E  +HR GRTGRAG KG+++    P + QR
Sbjct: 307 TDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQR 361


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 230/463 (49%), Gaps = 21/463 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+ + T +QE  +   L   D+L  +QTG+GKT A+ L +   +  +N        
Sbjct: 18  LQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLPILEQIDTKNPNVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L + PTRELA QV   L+    +  + +    GG S+ R+ R L+ G  IVVGTPGR
Sbjct: 74  --TLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIRSLERGVQIVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +  K L +  L+  VLDEADEML +GF DD++ IL  +P+ R    FSAT+   I 
Sbjct: 132 VIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTPETRNTACFSATMPREIR 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253
            L   + K  V V++  +    + ID     V     +  A+  IL     ++AI+F  T
Sbjct: 192 DLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKALQPILEMEDPESAIIFVRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + + S  T  L E    V    G LSQ +R   +   RDG+ ++ +ATD+AARG+D+ +L
Sbjct: 252 KQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIKLVVATDIAARGLDVENL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVWE 370
             VI+ +L  N E  +HR GRTGRAG+ G ++ +I    + M R+ ER  R+   +    
Sbjct: 312 SHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMVRQIERKLRQKLETCKIP 371

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC- 429
               VEA R    Q  +++ L  + +      +V  L  ++DP+ IAA  L++     C 
Sbjct: 372 SRSQVEAKRIEKLQNEIKESLAGERM-ASFLPLVRELSDEYDPQAIAAAALQMIYDQDCP 430

Query: 430 --------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                    PE   P  ++  + ++ + + + + G  +R N K
Sbjct: 431 EWMKTDWEVPESAVPKPVIKRKGKY-NPNNSKRHGNSNRGNRK 472


>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 634

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 200/352 (56%), Gaps = 10/352 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+ + G+ N + VQE  + P L EKD  ++  AQTG+GKT AFG  L   + A+N    
Sbjct: 15  KAILDLGFENPSEVQEKAI-PLLLEKDTDMVALAQTGTGKTAAFGFPLIQKIDADN---- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 AL ++PTREL +Q+  EL+ +   + G+ V    GG S+  + R+++ GA I+V
Sbjct: 70  --RNTQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITEQAREIKRGAQIIV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+ D I    +NI ++   +LDEADEML++GF +DI  IL  +P ++   +FSAT+
Sbjct: 128 ATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDTPDQKNTWLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  +AK +  + V + + ++N   + + +   LV   DR  A+  +   +    ++V
Sbjct: 188 PQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALKRLADANPDIFSVV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+       + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGID
Sbjct: 248 FCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + ++  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+   + R
Sbjct: 308 VDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKISSIER 359


>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 460

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA 125
           R        AL + PTRELA QV  ++  L  +T   + V    GG+ +  +   L++GA
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+F
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H   
Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 366 SVVWEPA 372
           ++  EP+
Sbjct: 365 AI--EPS 369


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 197/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 200/368 (54%), Gaps = 11/368 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+SE GY   T +Q   +   L  +DVL  AQTG+GKT +F L +   L     
Sbjct: 10  PEVL-KAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMIDKLSRGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    E       + +A+ IGGVS   + + L  G  +
Sbjct: 69  R---ARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLDRGVDV 125

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ TPGRL DH  RGK L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 126 LIATPGRLLDHCNRGKVL-LTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  L   +  +  R+ +A  +   ++I    +      + + +  ++     KN
Sbjct: 185 ATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRDGKRDVLQRMIEEDNVKN 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ +  VS   + L++      A+ G+L Q  R+  L   R+G  R+ +A+DVAAR
Sbjct: 245 AIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD+  V + ++ S+ E+ +HR GRTGRAG+ G +V      +  R +  +  A   
Sbjct: 305 GLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAV-----TLSTREDGKYLAAIEK 359

Query: 367 VVWEPAPS 374
           ++  P PS
Sbjct: 360 LIGNPIPS 367


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 195/366 (53%), Gaps = 6/366 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   +  + ++    
Sbjct: 16  KAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKIDWDENK---- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+   HIVVGTP
Sbjct: 72  --PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQKTHIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++S     V+DEADEML++GF   +E I+   PKKR  L+FSATI   
Sbjct: 130 GRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTLLFSATIPEE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   +    + + I S+N    ++ + A  V  + + + + NIL     + ++VFC 
Sbjct: 190 IKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEMPETSVVFCR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+A+RGID+  
Sbjct: 250 TKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDIASRGIDIEG 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++    E  +HR GRTGRAG KG+++     +  R    +       +  +  
Sbjct: 310 ITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYIGFKLEVKNL 369

Query: 373 PSVEAI 378
           PS E I
Sbjct: 370 PSKEEI 375


>gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 636

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 194/353 (54%), Gaps = 12/353 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGL 56
           MK F+   + + I  A+ E G+     VQE ++ P L     DV+  AQTG+GKT A+G+
Sbjct: 1   MKTFKELGVSEPICRAIEELGFEQPMPVQEEVI-PYLLGNGNDVIALAQTGTGKTAAYGI 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            +   +  E           AL ++PTREL +Q+  +L ++     G+ V    GG S+ 
Sbjct: 60  PVLQKVNPEEKHTQ------ALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIE 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R L+ GA I+V TPGRL D ++     + ++  VVLDEADEML++GF + I  I + 
Sbjct: 114 MQIRQLRKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEG 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R  L+FSAT+S  I  +AKNY  D   + + S N     +++   +V   D+  A+
Sbjct: 174 VPADRNTLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNHIYYMVNAKDKYLAL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++ ++    AI+FC T+         L    +   AL G+LSQQ+R   +Q  R+   
Sbjct: 234 KRLVDFYPRIFAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNV 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +ATDVAARG+D+ DL  V++  L  + E+  HRSGRTGRAG+KG S+ +I
Sbjct: 294 QFLVATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISII 346


>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 540

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 194/361 (53%), Gaps = 11/361 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++  AL+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L + ++
Sbjct: 38  FAIHPDIV-SALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPLLNKVI 96

Query: 64  AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           A  D     F     P ALA+APTRELAVQV  +LE      G+ V    GG +   +  
Sbjct: 97  ARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAYEPQID 156

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +VVGTPGRL D  +   L++SH K VVLDEADEMLDLGF  D+E +L  +   
Sbjct: 157 ALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLAMTSPG 216

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNA 234
           R+ ++FSAT+  A+  LA+ Y      +    E    +    +A+   +      D+   
Sbjct: 217 RQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVYRAHAMDKVEM 276

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+ +G    IVF  T+ + ++    LAE  F   A+ G+L Q  R  AL+  R G+
Sbjct: 277 LARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRAFRSGK 336

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             V +ATDVAARGID+ ++  VI+ +   + +  +HR GRTGRAG+ G++V FV   ++ 
Sbjct: 337 VDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAVTFVDWDDLH 396

Query: 354 R 354
           R
Sbjct: 397 R 397


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR----F 69
           +LSE G      +Q   L   L   D++  A+TG+GKT+ FG+     ++ E D+     
Sbjct: 40  SLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPALQRVVREGDKGYEDL 99

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               AP AL +APTRELA+QVG +L      + + +    GG     +   L+ G  ++V
Sbjct: 100 EFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYEEQINALKAGTDVIV 159

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  R + LN+  +K VVLDEADEMLDLGF  D+E IL + P  R+ ++FSAT+
Sbjct: 160 GTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAALPPVRQAMLFSATM 219

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHS-------DIDYRAVLVALSDRDNAIVNILRYH 242
             A+ T+A+ Y      +         S        + YRA  +   D+D  +  +L+  
Sbjct: 220 PGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNM---DKDEMVARLLQAE 276

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    I+F  T+ S +R +  L +  F   +L G+L Q  R  AL+  R G+  + +ATD
Sbjct: 277 GRGKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFRSGKVEILVATD 336

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  V++ +   +    LHR GRTGRAG  G +V  +
Sbjct: 337 VAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFV 382


>gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 427

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   L
Sbjct: 63  LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+V TPGRL D I    +++S L   VLDEAD MLD+GF  DI+ IL   P +R+
Sbjct: 119 RSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL +      A+ G  +Q  R  AL   ++   R  IAT
Sbjct: 239 TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342


>gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis]
          Length = 460

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 210/371 (56%), Gaps = 13/371 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   ++ KDV+  A+TGSGKT AF L +   LL    R+       AL + PT
Sbjct: 48  TKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 101

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + E L A  GV   V +GG+ +  +   L    HI++ TPGRL DH+   K
Sbjct: 102 RELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPGRLVDHLENTK 161

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSAT++  +  L +   +
Sbjct: 162 GFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLQ 221

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + V+V ++++ +    +    V + +  +D  +V+IL      + ++FCST  +  R   
Sbjct: 222 NPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSFMIFCSTCNNTMRTAL 281

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG+D+P +++VI+ ++ 
Sbjct: 282 LLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDVVINFDIP 341

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379
           ++ ++ +HR GRT RAGR G+SV  + Q    + +R E+L  +  + +       V  ++
Sbjct: 342 THSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQLIGK-QLPIYKTEEQEVMVLQ 400

Query: 380 ER--DAQRILQ 388
           ER  +AQR+++
Sbjct: 401 ERVAEAQRMVK 411


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L+++ LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        ++ + + ++       + I+FC T
Sbjct: 192 EKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTTENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    K L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       +    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFEIPKALAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217]
 gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 470

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 13/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   GY ++T +Q   L P L   DV+   +TGSGKT AFGL L + L  +  R    
Sbjct: 27  ENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 84

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L      + V    GGV +  +   L++GAHI+VGT
Sbjct: 85  ----TLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEHGAHIIVGT 140

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S++  +VLDEAD ML++GF+D I+ I++ +P++R+ L+FSAT   
Sbjct: 141 PGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTLLFSATFPD 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAI 248
            I ++A       V V + S    H  I        L D  + +  +     +   ++A+
Sbjct: 201 QIKSIADEIMYKPVMVKVES---THDAISIEQHFYQLEDNKSRLEALRLLLLSEQPESAV 257

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+    +    LAE  F V+AL G+L Q++R   L    +  AR+ +ATDVAARG+
Sbjct: 258 VFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVATDVAARGL 317

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L+ V +  L+ + E  LHR GRTGRAG  G +   I  +   +   +    N+ +V
Sbjct: 318 DIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIEEMLNIEIV 377

Query: 369 WEPAPSVEAIRE 380
            E  P +  + +
Sbjct: 378 TEALPGLNVLNK 389


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 181/338 (53%), Gaps = 10/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL +  Y   T VQ+ +L   L+E+D++V AQTGSGKT AF + +   +   EN      
Sbjct: 17  ALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIPICENIEWIEN------ 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELAVQV  E   +     +      G      ++ +L+   HI VGTP
Sbjct: 71  -KPQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQKTHIAVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L +  ++ VVLDEADEML++GF + +E IL     +  M++FSAT+  +
Sbjct: 130 GRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMMLFSATVPES 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA NY  D V + + SE      I++  + V   ++  A+  I         I+FC 
Sbjct: 190 IKKLASNYLNDPVDIEVQSEEAA-PKIEHAVIEVQDEEKTAAVEKIAVVENPDTCIIFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L +  + V  L G + Q  R   +   + G  R  +ATDVAARGID+ +
Sbjct: 249 TKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVATDVAARGIDIEN 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           + LVI+ +L    E  +HR+GRTGRAG++G +V FV P
Sbjct: 309 ISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTP 346


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 208/374 (55%), Gaps = 13/374 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A  + GY + + +Q A +   L  +DV+  AQTG+GKT AF L + + L  +     
Sbjct: 37  ILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILARLDLKQ---- 92

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P AL +APTRELA+QV    E   A   GV V    GG     +   L+ G H+VV
Sbjct: 93  --KTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLSALRRGVHVVV 150

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S L+ +VLDEADEML +GF +D+E IL  +P  +++ +FSAT+
Sbjct: 151 GTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPADKQVALFSATM 210

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  ++K +  D V + + ++     +I  R ++V+   + +A+  IL     +  IV
Sbjct: 211 PAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRILEVENFEGMIV 270

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    F   A++G++ Q +R   +  +R G+  + +ATDVAARG+D
Sbjct: 271 FVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILVATDVAARGLD 330

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVS 366
           +  +  V++ ++ ++ E+ +HR GRTGRAGR G ++ FV P  +++ +  E+  R+    
Sbjct: 331 VERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAIEKATRQGLTE 390

Query: 367 VVWEPAPSVEAIRE 380
           +     P+VE I E
Sbjct: 391 MR---PPTVEDINE 401


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 195/368 (52%), Gaps = 7/368 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + GY N + +QE  + P L   D++  AQTGSGKT AFGL L   +   +      
Sbjct: 15  EALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPLMEYVDPSDRDVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTREL +QV + L    A+ G+ V    GG  +  ++  L+ G  IVVGT 
Sbjct: 73  ----ALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQAQLRAGGQIVVGTV 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I    L +   + VVLDEADEMLDLGF +D+E IL  +P  R+  +FSAT+ P 
Sbjct: 129 GRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPGSRQTALFSATMPPE 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L++ Y  + V V + +       ++  ++ ++  D+ + +  +L       AIVF  
Sbjct: 189 IRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTVLESEKPDQAIVFVR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  + L +    V AL G++SQ +R   +   + GR  + +ATDVAARG+D+  
Sbjct: 249 TKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPILVATDVAARGLDISS 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV-WEP 371
           +  V++ ++ ++P+  +HR GRTGR GR G ++       +R  E + R     +  W  
Sbjct: 309 VTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEAIERHTRTPMAPWTA 368

Query: 372 APSVEAIR 379
              V A+R
Sbjct: 369 GARVAALR 376


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/342 (38%), Positives = 189/342 (55%), Gaps = 5/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D   
Sbjct: 20  ICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRVFDDADIAP 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P AL + PTRELA QV  +L+   A   V +A   GG     + + LQ G  +V+G
Sbjct: 80  PDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKLLQRGVDVVIG 139

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
           TPGRL D H RG  L + H+  VVLDEADEMLDLGF   IE IL++      + ++FSAT
Sbjct: 140 TPGRLLDLHERGD-LVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQTMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246
           +  AI  L++ +    V +   SE  + +    R V       D+   I +IL+  G   
Sbjct: 199 MPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAHILQAQGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F  T+ S ++    LAE  F V A+ G+L Q+ R  +LQ  R G   + +ATD+AAR
Sbjct: 259 SIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLV 360


>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
 gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
          Length = 468

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L + 
Sbjct: 13  FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L     + S   A  AL + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+R
Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT    I  L+K + KD   V++ +   +  DI+     V+   +   ++ ++L
Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361


>gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 414

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 190/345 (55%), Gaps = 2/345 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + I  A+ E GY++ T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPIIH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L               L + PTRELAVQ+G   +     T +      GGVS + +   
Sbjct: 62  NLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVEQ 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++ TPGRL D  +   +N+ H+  +VLDEAD+MLD+GF +D++ I+  +PK R
Sbjct: 122 LKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA+ +  D   V +A  +     +D R   V  +D+   + +I++
Sbjct: 182 QTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHIIK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N +VF  T+       K L +      A+ G+ SQ  R  AL   ++    + +A
Sbjct: 242 EEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+  L  VI+ +L + PE  +HR GRTGRAGR+GM++
Sbjct: 302 TDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAI 346


>gi|149919487|ref|ZP_01907967.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
 gi|149819612|gb|EDM79039.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
          Length = 1390

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+   G+   T VQ       ++  DVLV +QTGSGKT AF L   +      
Sbjct: 163 LPEHVRNAVDAAGWTAPTKVQARTYETMIQGTDVLVQSQTGSGKTGAFCLPWLA------ 216

Query: 67  DRFSPASAPLA----LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +RF P  A       + + PTRELA QV  EL  L  +T V V    GG +++ +   L 
Sbjct: 217 NRFQPGDAAETGVQLIVLLPTRELAKQVCNELVRLAIETPVDVLPVYGGTAMNPQLDALA 276

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G H VVGTPGR+ DHIR K L++S ++ VVLDE DEML +GF +DI  IL + PK+R+ 
Sbjct: 277 RGVHAVVGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQT 336

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I  +A+   ++   + ++ ++   ++I +       S +   +V+++   
Sbjct: 337 CLFSATVPRDIARIARRDMREPEHIVLSGDDIAAAEIYHGFYSTGGSIKTRDLVDMIIVE 396

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VFC+TR        VL ++ +   ALS +L+Q  R + + + RD + R  +ATD
Sbjct: 397 DPAAAMVFCNTREETRLVASVLQKNGYSAHALSSDLTQAAREHVMGLFRDRKLRFLVATD 456

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+     N EN +HR+GRTGRAGR G+++ ++
Sbjct: 457 VAARGIDVSHVSHVINYSFPENAENYVHRTGRTGRAGRPGVALSIV 502


>gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 622

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 207/365 (56%), Gaps = 10/365 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + +++ G+   + VQE  +   L+ E D++  AQTG+GKT AFG  +   +   N R + 
Sbjct: 15  KGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFPMLQKIDV-NSRTTQ 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 L ++PTREL +Q+  E++    Y K G+ V    GG S+  + R+++ GA I+V
Sbjct: 74  G-----LILSPTRELCLQIANEMKAYGKYCK-GLNVVAIYGGSSITDQAREVKRGAQIIV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+ D I  K ++I+ ++  VLDEADEML++GF++DI  IL  +PK +   +FSAT+
Sbjct: 128 ATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPKDKSTWLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  +AK++  +   + +  +N   S++ +   LV   DR  A+  +   +    +++
Sbjct: 188 PKEVARIAKDFMHEPQEITVGHKNESTSNVSHEYYLVNARDRYQALKRLADANPDIFSVI 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGID
Sbjct: 248 FCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQMLVATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  VI+ +LS   E   HRSGRTGRAG+ G+S+ ++ ++  RR   + R  N     
Sbjct: 308 VDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLRSIERIINKKFEK 367

Query: 370 EPAPS 374
           +  P+
Sbjct: 368 KDIPN 372


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 277/565 (49%), Gaps = 34/565 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I + L   GY   + +QE  +   L  +D++  AQTG+GKT AF L L   + L+ N   
Sbjct: 23  ILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDNIDLSLN--- 79

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127
               AP  L +APTRELA+QV   ++ +YA+   G  V    GG S   + R L+ G H 
Sbjct: 80  ----APQLLILAPTRELAIQVSEAVQ-VYARGLKGFHVLPIYGGQSYDIQLRPLKRGVHC 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHI+   L +  LK+ VLDEADEML +GF DDI+++++  P++R++ +FSA
Sbjct: 135 VVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQIALFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKN 246
           T+   I  +A+ +  +   V + ++      I  +  LV  LS + +A+  IL       
Sbjct: 195 TMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQKLDALTRILEVTEFDA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      ++ L+   F   A++G++ Q +R   +   + G   + +ATDVAAR
Sbjct: 255 MIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P +  V++ ++  + E  +HR GRTGRAGR+G ++  +    +R    + R     
Sbjct: 315 GLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNIERVTRQK 374

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--- 423
           +     P+ + I E+      +     ++I   +  + + L+ +          L++   
Sbjct: 375 IEPLELPTAKIINEKRIDTFKKR--ITETINNQDLSVFEKLVTEFQEANEEIAHLKVAAA 432

Query: 424 --HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-RDNFK-GSSWFSLSVGSKQKA 479
             H A    P  ++      GRD+   + +   V   S +D+ K     + L VG+    
Sbjct: 433 LAHIAQGNEPLLLSEKEPSFGRDQKPGEEKVVPVEANSLKDHPKIPMRRYKLEVGNNNNI 492

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKY 535
           +   ++  +   + ++ + IG+I++  + + V    E+  + + +L++TV   K + +  
Sbjct: 493 KPGNILGAIANEADMDSEYIGSIQIFDNFSTVDLPDEMPEEVLKVLQKTVVNGKRLNIVE 552

Query: 536 L---------GGEKPDFRGYKSSGF 551
           L         GG KP  R +    F
Sbjct: 553 LTEKNNKATVGGSKPGKRNFGRGKF 577


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 190/346 (54%), Gaps = 10/346 (2%)

Query: 37  EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           E +V+  A+TG+GKT AFGL L  T+  +           AL +APTRELA+QV +E++ 
Sbjct: 43  EANVIAKARTGTGKTAAFGLPLVQTIREDKGHVR------ALILAPTRELALQVCKEIDS 96

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           L   T   +A   GG S+  + R L+ G  IVVGTPGR+ DHI  K L++S +   +LDE
Sbjct: 97  LTTGTYPRLAAVYGGQSMGEQLRALKRGVEIVVGTPGRVQDHIERKSLDLSQIDYFILDE 156

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           ADEMLD+GF DDIE I   +  + R+L+FSAT+   I  +A  +  D   V   +   + 
Sbjct: 157 ADEMLDMGFIDDIEAIFAKANPESRILLFSATMPQPILKIASRFMGDYEIVEEETSPEEP 216

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              + +  +V  SD+  A+V ++        +VF  T+A     T+ L E  ++  AL G
Sbjct: 217 VLTEQKYWIVRESDKIEALVRLIDISPDFYGLVFTQTKADADMITRQLDERGYEAAALHG 276

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q +R   L   R+ + R+ +ATDVAARGID+  L  V++  L  +    +HR GRTG
Sbjct: 277 DIPQAQREKILYRFRNKKTRILVATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRTG 336

Query: 337 RAGRKGMSVFVIPQNMQRRAERLF----REANVSVVWEPAPSVEAI 378
           RAG KG++  ++    +R+ E L     + A  ++   P P V  +
Sbjct: 337 RAGAKGLAFTLVRPEERRKLEYLKAAVRKSAKGTMTEAPVPPVSDV 382


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 193/338 (57%), Gaps = 3/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L++   + +
Sbjct: 17  IQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMIHNLISTRAKPN 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P   P +L + PTRELA+QV  E   LY K T +  AV  GGV  + + + + +G  +++
Sbjct: 77  PKQ-PRSLVLVPTRELAIQV-HESFVLYGKYTQIRTAVIFGGVGQNPQAKAIASGLDVLI 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    +++ +L+  VLDEAD MLD+GF  DI  I+   PK+R+ L FSAT+
Sbjct: 135 ATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPKRRQNLFFSATM 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA +   + +R+++   +     I    +   L+D+ N ++++ +    K  I+
Sbjct: 195 PPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHLFKDKNFKKTII 254

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ +++L +   +   + G  SQ  R  AL+  R G+ R  +ATD+AARGID
Sbjct: 255 FTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRALVATDLAARGID 314

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + D+  VI+ E+   PE  +HR GRT RAG+ G+++ +
Sbjct: 315 IDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAI 352


>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
 gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
          Length = 613

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 195/360 (54%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL+E G      +Q A +   L  +DVL  AQTGSGKT+AFGLA+ + L   
Sbjct: 87  GLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAILARLDGG 146

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P AL + PTRELA+QV   L  L    G+     +GG+S  R+   L  G 
Sbjct: 147 KAR---PKRPRALVLVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMSFGRQAESLARGV 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R    ++     + LDEAD+M D+GF   +  I+D +P   + L+F
Sbjct: 204 DLLIATPGRLSDHVRQGTASLGDCNFIALDEADQMADMGFMPQVREIMDLTPPGGQRLLF 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++A      + +D+    V+ SD+ + I  I    G  
Sbjct: 264 SATLDGDVDKLVRQYLADPVTHSVAPSTASVTTMDHHLFQVSHSDKQDIITRIGAREG-- 321

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R T+ L E     VAL G  +Q +R+  L   ++G A V +ATDVAA
Sbjct: 322 RTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVLVATDVAA 381

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + ++ LV+H + +++ ++ LHR+GRT RAG  G+ V ++  + +R   R+   A V
Sbjct: 382 RGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQRRTVRRMTDRAGV 441


>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
 gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
          Length = 427

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   L
Sbjct: 63  LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+V TPGRL D I    +++S L   VLDEAD MLD+GF  DI+ IL   P +R+
Sbjct: 119 RSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL +      A+ G  +Q  R  AL   ++   R  IAT
Sbjct: 239 TSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 210/380 (55%), Gaps = 32/380 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   ++L E GY   T +QE  +   +  KD++  AQTG+GKT AFG+ +       
Sbjct: 12  NLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV------ 65

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            ++ +P    + AL + PTRELA+QV +E++ L     V      GG S+  +   L+ G
Sbjct: 66  -EKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINFLKKG 124

Query: 125 AHIVV-GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           + +VV GTPGR+ D +    LN+ ++K  VLDEAD ML++GF DDIE I+   P+ R+ L
Sbjct: 125 SDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPEDRQNL 184

Query: 184 MFSATISPAITTLAK---NYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +FSAT+   I  LA+   N   + +RV    +  E  +   I YR   V   D+   +  
Sbjct: 185 LFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQ--IIYR---VNPRDKFKKLTE 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  + A+  I+F  T+       + L E  F   A+ G+ SQ++R   L   R G+ ++
Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------Q 350
            +ATDVAARG+D+  ++LVI+  L  + E+ +HR GRTGRAGR+G ++ ++        Q
Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359

Query: 351 NMQRRAERLFREANVSVVWE 370
           N+Q++      +AN+ V+ E
Sbjct: 360 NIQKKT-----KANIEVINE 374


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 2/345 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAI 346


>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
          Length = 448

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 211/371 (56%), Gaps = 13/371 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL    R+       AL + PT
Sbjct: 42  TRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLENPQRY------FALILTPT 95

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + + L +  GV   V +GG+ +H +   L+   HI++ TPGRL DH+   K
Sbjct: 96  RELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLENTK 155

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSAT++  +  L +   +
Sbjct: 156 GFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLR 215

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + V+V ++++ +    +    + + +  +D  +V+IL      + ++FC T  +  R   
Sbjct: 216 NPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCGTCNNTVRTAL 275

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  V L G+++Q +R  AL   +     + I+TDVA+RG+D+P +++VI+ ++ 
Sbjct: 276 LLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRGLDIPHVDIVINFDIP 335

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379
           ++ ++ +HR GRT RAGR G S+  + Q    + +R E+L  +  + +       V  ++
Sbjct: 336 THSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISK-QLPLFPTEEEEVMLLQ 394

Query: 380 ER--DAQRILQ 388
           ER  +AQRI++
Sbjct: 395 ERVSEAQRIVK 405


>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
           13177]
          Length = 435

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 192/356 (53%), Gaps = 8/356 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF       AL + P
Sbjct: 1   MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDAR--RFDVQ----ALVLCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L  A+  V V    GG  +  + + L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +   RV +  E    S I  R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 175 RHPKRVKL-EERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   ++A
Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349


>gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 451

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/347 (35%), Positives = 190/347 (54%), Gaps = 2/347 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ Q I +AL    Y   T +Q   +   L+ KD+L  AQTG+GKT AF + +
Sbjct: 1   MTSFETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  +    +   AL + PTRELA+Q+G           +  AV  GGV+   + 
Sbjct: 61  LQLLDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQV 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  I+V TPGRL D +  K L++ H+   VLDEAD MLD+GF +D++ I+   P+
Sbjct: 121 DALQKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQ 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P I  L++   K  V+V +   +     I+     V  +++++ +++I
Sbjct: 181 HRQSLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVFFVDKNNKNDLLLHI 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+     + +VF  T+    R  K LA+   +  A+ G  SQ  R  AL   +    RV 
Sbjct: 241 LKDQLLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATD+AARGID+  L+ VI+ E+ + PE  +HR GR+GRAG +G+++
Sbjct: 301 VATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAI 347


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 211/415 (50%), Gaps = 17/415 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E G+   + +Q+  +   L   DV+  A TG+GKT AFGL  A  L+ +N    
Sbjct: 22  ILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLP-ALHLIHDN---- 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S  L L   PTRELA QV  EL  L    G+  A   GG S   +   LQ G  ++V 
Sbjct: 77  PGSQLLVLT--PTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEALQRGVQVIVA 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L       VVLDEADEMLD+GF + I+ I    P KR+ L+FSAT+ 
Sbjct: 135 TPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQTLLFSATMP 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  LA    K  + +++  +   + DI     ++   +RD+AI+ +L       +I+F
Sbjct: 195 SAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILRLLDSEEPAKSIIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V R +  L  + +    L G++ Q +R   ++  R  + RV +ATDVAARG+ +
Sbjct: 255 CRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLVATDVAARGLSV 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  V +  L  +P + +HR GRTGRAG KG++   +     R  +R  +     +  E
Sbjct: 315 SDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRYEKVTGAPINRE 374

Query: 371 PAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             P++E +    R++   RI   PL        E ++V  L+ + D   + + F+
Sbjct: 375 IIPTLEDVKKLKRQKLVSRIQNQPLH------QETELVLELMKEVDHSTLVSKFI 423


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 5/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL+  +R +
Sbjct: 12  ILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGNR-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  I+V 
Sbjct: 70  QAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGKGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +N + L+ ++LDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     ++    +V    +  A++++++ +  K  +VF
Sbjct: 190 DDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L  +     A+ G  SQ  R+ AL   ++G  RV +ATD+AARGID+
Sbjct: 250 SRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++      + R  ERL ++
Sbjct: 310 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIERLIKQ 364


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 193/344 (56%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-S 73
           L+  GY  +T +Q   L   L  +D++  A+TGSGKT AFGL L        D+ +P   
Sbjct: 19  LASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAFGLGLL-------DKINPRWF 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  AL + PTRELA QV +E+  L        VV +C GG  +  +   L++GAH+VVGT
Sbjct: 72  AVQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLC-GGTPMGPQIGSLEHGAHVVVGT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+    L++S ++ +VLDEAD M+D+GF ++I  I+ + P+KR+ L+FSAT   
Sbjct: 131 PGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPRKRQTLLFSATYPD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I   +  + K+ V V + S +     I+     +    R   +  +L +    + I FC
Sbjct: 191 TIRKQSARFLKNPVEVKVESLH-DAGHIEQHFYKIQPERRVATVAALLGHFRPVSTIAFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+  V      L +  F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+ 
Sbjct: 250 NTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVLVATDVAARGLDIS 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            LE VI+ +LS +PE  +HR GRTGR G KG+++ ++  N  +R
Sbjct: 310 TLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKR 353


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 203/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVTLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALLA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LEL+++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELLVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
 gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
          Length = 591

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 197/363 (54%), Gaps = 9/363 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+ + G+   + VQE  + P L   E D++  AQTG+GKT AFG  L   + A+      
Sbjct: 16  AIQDMGFETPSEVQEKAI-PILLNEETDIVALAQTGTGKTAAFGFPLIQKINAD------ 68

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +     L ++PTREL +Q+  EL+       + V    GG S+  + R ++ GA IVV T
Sbjct: 69  SRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQARQVKKGAQIVVAT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  + ++IS ++  VLDEADEML++GF +DI  IL  +P  +   +FSAT+  
Sbjct: 129 PGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTPDDKSTWLFSATMPR 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + T+AK +      + + S N     + +    V+  DR  A+  +   +    ++VFC
Sbjct: 189 EVATIAKKFMHTPQEITVGSRNSGSDSVRHEFYAVSGRDRYLALKRLADANPDIFSVVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L E  +   A+ G+LSQ +R   ++  R  + ++ +ATDVAARGID+ 
Sbjct: 249 RTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVATDVAARGIDVD 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ + + R+       +P
Sbjct: 309 DITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIKSIERKIQKKFEQKP 368

Query: 372 APS 374
            P+
Sbjct: 369 IPT 371


>gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
          Length = 432

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 202/365 (55%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ+A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
             VL E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY   T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEVYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 419

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 183/337 (54%), Gaps = 6/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL------LAENDR 68
           LSE GY + T +Q   +   L  +D++  AQTG+GKT AF L +   L      L++  +
Sbjct: 16  LSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPILQKLSECDVELSDTKQ 75

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA+QV +        +G+  A+  GGVS+  +   L+ G  I+
Sbjct: 76  TVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVSIDAQADALKAGVDIL 135

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+R   L +  L  +V DEAD MLD+GF+D+I  IL   P KR+ L+FSAT
Sbjct: 136 VATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAILKQVPSKRQTLLFSAT 195

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             P++  L+K  Q+D   + +   N   + ++     V    +   I ++++    +  +
Sbjct: 196 FDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDADRKSELICHLVKSKLWQQVL 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +         + +   +  A  G+LSQ  R  ALQ  + G  +V +ATDVAARG+
Sbjct: 256 IFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQFKQGEIQVLVATDVAARGL 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ +L++V++ EL    E+ +HR GRTGRAG  G+++
Sbjct: 316 DVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAI 352


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 200/354 (56%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+S+ GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   L+
Sbjct: 6   FDFAPEIL-RAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P++A + L + PTRELA QV   +        +     +GG     + + L+ 
Sbjct: 65  DNPAPVQPSNARV-LILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKLKA 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHI+V TPGRL +H+    L++S ++ +V+DEAD +LD+GF  D++ IL +  K R+ L
Sbjct: 124 GAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT S A+  LA N   D  R  I S N+Q+S  D   +    V    +   +  ++ 
Sbjct: 184 LFSATFSDAVKKLA-NLMLD--RPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF STR S     + L     +   + GE +Q  R  AL+   +G+ RV +A
Sbjct: 241 KQNWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+PDLE V++ +L    E+ +HR GRTGRAG++GM++  + +  +R
Sbjct: 301 TEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEER 354


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 2/345 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAI 346


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/360 (36%), Positives = 199/360 (55%), Gaps = 6/360 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T +QE  +   L  +D++  AQTG+GKT AFGL L   LLA+  R    +    L
Sbjct: 42  GIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT-RTL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL  Q+   L+    K+ + + V +GGVS+++++  L+ G  I+V TPGRL D 
Sbjct: 101 ILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGRLLDL 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PKKR+ ++FSAT+  AI  LA 
Sbjct: 161 INRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKAIADLAG 220

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            Y  D V+V +    +    ++ Y   +   +D+   +   L  +    A+VF  T+   
Sbjct: 221 EYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAMVFLRTKHGA 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +  K L    + V ++ G  SQ +R  AL+  RDG  +  IATDVAARGID+P +  V 
Sbjct: 281 EKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVY 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWEPAPS 374
           + +L   P+  +HR GRT RAGR G+++ F  P   +  R  ERL    +++V    AP+
Sbjct: 341 NYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM-GIDITVASGEAPA 399


>gi|157737778|ref|YP_001490462.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
 gi|157699632|gb|ABV67792.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
          Length = 454

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 11/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + L    Y  LT +QE  +   L+ KD++  A+TGSGKTVAF L + + L A+
Sbjct: 7   NLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVNKLKAK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL +APTRELA Q+ + L  L  +     V+ +C GGV    +   LQ+
Sbjct: 67  EFKIQ------ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLC-GGVPFKPQVVSLQH 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            AHIVV TPGR+  HI+ K +N+ ++   VLDEAD+MLD+GF DDI  I+++ PK R+ +
Sbjct: 120 NAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I T A N  K+ +   I+ E  +   I+ +   V  S++   I  ++ ++ 
Sbjct: 180 LFSATYEKNIETFASNILKNPIYKEISDE--KEILINQKFYEVTPSEKTALIPALISHNQ 237

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK  ++FC+ + +  +    L +    ++ L  +L Q++R   + +  +    + IATDV
Sbjct: 238 AKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+ + D++LVI+ +LS + +   HR GRT RAG+ G+++ +  +N   + E +  + 
Sbjct: 298 ASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKF 357

Query: 364 NVSVVWEP 371
           N   +  P
Sbjct: 358 NNIKIENP 365


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 219/418 (52%), Gaps = 14/418 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D++  AQTG+GKT AFGL +   L  +ND      +  AL I PTRELAVQ+  E+  L 
Sbjct: 53  DLIAQAQTGTGKTAAFGLPIIQNL--KND-----GSIEALIITPTRELAVQISDEIFKLG 105

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
                      GG ++ R+   L+    +++ TPGRL DH+R   L   +   +VLDE+D
Sbjct: 106 RNCRTKTVSVYGGQAIRRQVELLEKAPQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESD 165

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           EMLD+GF DDIE I    P  R+ L+FSAT+   I  LA+    +   V + +    +SD
Sbjct: 166 EMLDMGFLDDIEEIFTYLPASRQTLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSD 225

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I  R  ++   +R++AIV ++        I+F   +      +  L    +Q  AL G++
Sbjct: 226 ISQRYYIINEYEREDAIVRLIDSEAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDM 285

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ER  A+   + G   + +ATDVAARG+D+ ++  V +  +  NPE+ +HR GRTGRA
Sbjct: 286 EQRERQAAVNAFKQGAIDILVATDVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRA 345

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQ 397
           G+KG+++ +      +   R+      ++     P++ E +++ D+ +++Q+ L   SI 
Sbjct: 346 GKKGIAITLATPLEFKEIRRISETTKATIELYEIPTIAETLKQTDS-KLIQN-LLNHSIT 403

Query: 398 GDEKKMVDVLLAKHDPEKIAAGFLR--IHRAGLCAPEEI--TPVSLVSGRDRFRDDSR 451
            D  ++ + +  + D  ++A   L   + ++ +  P +I  +   L+  ++R   D R
Sbjct: 404 DDALRIYEQIRGEIDTTQLACKLLSMLMKKSSIMGPNKIGLSKEDLMQLKNRLSGDDR 461


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 194/360 (53%), Gaps = 7/360 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + +  L E  R + A 
Sbjct: 20  AVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARAR 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRE+A QV    +       + VA+ IGGVS   + R L+ GA +++ TPG
Sbjct: 77  MPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQDRKLERGADVLIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P I
Sbjct: 137 RLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA--KNAIV 249
           T L K +    V V +   +   + I  R V       D   V   ++   GA  +NAI+
Sbjct: 197 TKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLRELIHNEGAELQNAII 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +  + +A+DVAARG+D
Sbjct: 257 FCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVASDVAARGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+    +   +N  + W
Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYINAIEEMSNEKIEW 376


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 199/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252
             L++ Y      + I +       I++  +  A+ D   +++ ++       + I+FC 
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTMIENPDSCIIFCR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ +
Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     
Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEDYIGFEIPKAIG 370

Query: 373 PSVEAIRERDA 383
           PS E + +  A
Sbjct: 371 PSKEEVMKEKA 381


>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
 gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 202/366 (55%), Gaps = 7/366 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  GY ++T +Q   L   L  KDV+   +TGSGKT AFGL L + L  +  RF     
Sbjct: 50  LSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNKL--DIKRFCVQ-- 105

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV +E+  L  A   + V    GG+    +   L++GAHIVVGTPG
Sbjct: 106 --ALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIVVGTPG 163

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD ML++GF+  ++ I++  P +R+ L+FSAT    I
Sbjct: 164 RVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTLLFSATYPNQI 223

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++A+    + V V + S +   S   Y   +   + R   +  +L  +  ++ +VFC+T
Sbjct: 224 QSIAERVMLNPVMVKVESSHDNASIQQYYYKVEGDTHRLEVLRLLLLQYKPESTVVFCNT 283

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        +L  H F  VAL G+L Q++R   L    +  A + +ATDVAARG+D+  L
Sbjct: 284 KRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASILVATDVAARGLDIDAL 343

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + VI+  ++ +PE  +HR GRTGRAG  G++  +  ++   +  RL     + V  EPAP
Sbjct: 344 DAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLEEYQEIIVSAEPAP 403

Query: 374 SVEAIR 379
           +   ++
Sbjct: 404 ATSLLK 409


>gi|21219042|ref|NP_624821.1| DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
 gi|5763955|emb|CAB53334.1| putative DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
          Length = 439

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 201/371 (54%), Gaps = 5/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+ E ++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL   L   
Sbjct: 13  GLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLAL---LAGT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL +  TRELA QV   L       GV +   +GG+S++R+ + L++GA
Sbjct: 70  AGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +  +  +++ ++  VLDEAD+M DLGF   +  ILD  P   + L+F
Sbjct: 130 EVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L +++  D V V++   +   S +++  + V  +D+      I    G  
Sbjct: 190 SATLDGDVDQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHPADKYATATEIAARDG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+A V RFT+ L        AL    SQ +R++ L    +G   V +AT+VAA
Sbjct: 248 RVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAGR G  V ++  + +R   R+  EA +
Sbjct: 308 RGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGI 367

Query: 366 SVVWEPAPSVE 376
                P  S E
Sbjct: 368 RPTVTPVRSGE 378


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 206/370 (55%), Gaps = 8/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ + L+++G  + T +Q   +   +  +DV+  AQTG+GKT AFGL +   L+   
Sbjct: 9   MPRLV-KKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIDALMRAG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P +    L +APTRELA Q+   L      + + VA+ +GG  +  + + L+ G  
Sbjct: 68  VKPEPKTV-RGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKRLERGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  K L++S    +VLDEAD+MLDLGF   +  I       R+ ++FS
Sbjct: 127 LLVATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDRQTMLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y +  VRV +    +    I+     +A S++   ++ +L  H  + 
Sbjct: 187 ATMPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSLHYIAKSEKPKLLIELLGKHKGER 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    +  K L +  F  V++ G  SQ +R  A+   R+G+  V +ATDVAAR
Sbjct: 247 AIVFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREAN 364
           G+D+PD++ V + +L + PEN +HR GRT RAG +GM++ F  P  M + R+ +   + +
Sbjct: 307 GLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELRSIQKVMKMD 366

Query: 365 VSV----VWE 370
           + V    VWE
Sbjct: 367 IPVASGRVWE 376


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 208/356 (58%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L+L + 
Sbjct: 13  FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L     + S   A  AL + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H++   L++S +KA++LDEAD MLD+GF DDI+ I+   PK+R
Sbjct: 127 LRHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT    I  L+K + KD   V++ +   +  DI+     V+   +   ++ ++L
Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 202/352 (57%), Gaps = 12/352 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  + + + ++++E G+ + T +Q   +   L   D+L  A TG+GKT AFG+ +   L 
Sbjct: 5   FSQLSEPLRKSITEMGFQHPTPIQREAIPLALAGYDLLGQAATGTGKTAAFGIPILEKL- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + D         AL + PTRELA+QV  +L  L    G+ V    GG SV ++ + L  
Sbjct: 64  GKEDLLG------ALILTPTRELALQVKDQLFQLARYKGLRVFAFYGGTSVAKDIQVLST 117

Query: 124 -GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              H+VVGTPGR+ D I G+G +++  ++  VLDEAD MLD+GF +DIE+I+   P +R+
Sbjct: 118 VPPHVVVGTPGRIKDLI-GRGYISLEKVRFFVLDEADLMLDMGFIEDIEYIVSHLPNRRQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILR 240
             MFSAT+   +  LAK Y ++  RV           I+ R + L + + + + +  ILR
Sbjct: 177 TFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLIRLSSSAQKLSELEKILR 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  IVF  T+       +VL    F  VAL G+++Q++R +AL++ RDG+ ++ +A
Sbjct: 237 EHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKIVVA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TDVA+RG+D+  + LVI+  L  +PE  +HR GRTGR G  G +  FV P++
Sbjct: 297 TDVASRGLDIKGVGLVINYHLPEDPEIYIHRIGRTGRIGSYGKAYSFVTPED 348


>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
 gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
          Length = 477

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 194/354 (54%), Gaps = 14/354 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +QE  + P L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLHRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     T +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDQLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------NAIVNIL-- 239
           T++P I  +   +  +  RV +A +      I    V+   S +D       A++  +  
Sbjct: 187 TMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEKRAVLRAMIE 246

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +N I+FC+ +  V    K + ++ +    + G+L Q  R   L   RDG  R  
Sbjct: 247 SEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDGFRDGTLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGR+G ++ + +P++
Sbjct: 307 VASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISVPRD 360


>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 411

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 191/344 (55%), Gaps = 12/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--- 71
           L+  GY + T +Q   +   L ++DV+  A TG+GKT AF L +   LLA     SP   
Sbjct: 16  LASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPILHHLLA----LSPLQE 71

Query: 72  --ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             A  P+ AL + PTRELAVQV +        T + V +  GGVS+  +      G  ++
Sbjct: 72  LTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNAGIDVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  AI +L+K   +D   + +A  N   ++I+ + V    +DR   +V +++R       
Sbjct: 192 LDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIE-QVVYAVDADRKTELVSHLVRSKNWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDVAARG
Sbjct: 251 LIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q 
Sbjct: 311 LDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQE 354


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 256/521 (49%), Gaps = 40/521 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   + +Q   +   L   D++  AQTG+GKT+AFG  + S +   
Sbjct: 10  NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI-ES 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D+ S      AL + PTRELA+QV  EL  +       +    GG  + R+ + L+ G 
Sbjct: 69  SDKIS------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S +  +VLDE+DEML++GF DDIE I+ S  K R+ L+F
Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA  Y K+ V+ + I   +     I      V   DR  ++  IL     
Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G     +ATDVA
Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+  VI+ +L  + E+ +HR GRTGRA ++G++  ++        ++L +   
Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPEK---IAAGF 420
             +  +  P+++ I E     +L+D    +++ Q D K  + V     D      +AA  
Sbjct: 363 SKIKRKEIPTLDEIFEAKYNSMLKD--VKNTLEQNDYKDFIPVATGLDDDYNLVDVAAAL 420

Query: 421 LRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           +++   R       E +PV                        + K    F LSVG   K
Sbjct: 421 MKMLFDREFNFDYNEDSPVK-----------------------STKPVRLF-LSVGRIDK 456

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
                ++  L  +S I+   +G I +    TF+++  D +D
Sbjct: 457 VTPVKILNFLEETSDIDVNEVGDIDIFDKFTFIDLPEDLLD 497


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 152/457 (33%), Positives = 241/457 (52%), Gaps = 32/457 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           I   I ++L ERG   L  +Q    +     +DV+  A+TG+GKT++F L +   L+ + 
Sbjct: 59  ISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGKTLSFALPITEKLIKKK 118

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
             +D+  P   P  L +APTRELA+Q+  E + L   +G +  VCI GGV    +   L+
Sbjct: 119 RSDDKIRP---PKVLVLAPTRELAIQITSEFKAL---SGSLKVVCIYGGVPYAEQENHLR 172

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR- 181
           NG  IV+GTPGR+ DHI  K L +S LK VVLDE D MLD+GF D +E IL  +  K R 
Sbjct: 173 NGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKDRH 232

Query: 182 --MLMFSATISP-AITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
              L+FSAT+   A+ T+ K  + D   V++  ++  R  + ++++ +     +R   I 
Sbjct: 233 PQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAATIG 292

Query: 237 NILRYHGAKNA--IVFCSTRASVSRF--TKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++++ +G  +A  I+F  T+   +    + VL +   +V  L G++ Q +R   L+  R+
Sbjct: 293 DLVKVYGGDHARTIIFSPTKKEANELALSSVLKQ---EVQVLHGDIQQAQREVTLKGFRE 349

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G     +ATDVAARG+D+P+++LVI  E   + +  +HRSGRTGRA R G+ +       
Sbjct: 350 GNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFYKPTH 409

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           Q R + +  EA ++     AP +  I +   RDA +       LDS+  +     + + +
Sbjct: 410 QDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAK------SLDSVPAEVLVHFESIAS 463

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
           +    K A   L    A +     IT  SL+S R+ F
Sbjct: 464 EIIETKGAVKALSAALAHISGYTSITNRSLLSSREGF 500


>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 499

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 190/352 (53%), Gaps = 12/352 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+ERG  +  ++QE  L   L   D++  A+TG GKT  FG+ L   +     
Sbjct: 26  PEIV-TALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRISTGEA 84

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTG-----VVVAVCIGGVSVHRER 118
                  P AL I PTREL +QV ++L+     L A TG     + V    GG    ++ 
Sbjct: 85  TRELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPYEQQT 144

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +VVGTPGRL D      L +  ++A+VLDEADEMLDLGF  DIE +L   P+
Sbjct: 145 EALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLRMVPE 204

Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           KR+ ++FSAT+   I TLA+ +  +   +R   A     H +           D+   + 
Sbjct: 205 KRQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAHSLDKPEVVA 264

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G    ++FC T+ +  +    LAE  F+V A+ G+L Q  R  +L+  R G   
Sbjct: 265 RILQAEGRGATMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFRSGDVD 324

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 325 VLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 376


>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 513

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +        +R  P 
Sbjct: 16  EHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPQ 68

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  A+ + PTRELA+QV   +      +G+      GG S+ R+   L+ G HIVVGT
Sbjct: 69  QKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVHIVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    L +  +K  VLDEADEML +GF DD+E IL  +P+ R+  +FSAT+ P
Sbjct: 129 PGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFSATMPP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           +I  L   + +  V V +       + I+  A L+     +  A+  IL     + A++F
Sbjct: 189 SIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPETALIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR + +  T  L      V    G+LSQQ R   L   R  + R  +ATD+AARG+D+
Sbjct: 249 VRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAARGLDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR +++F E +V   W+
Sbjct: 309 DQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLV-QPFERRKQQIF-ERHVRQNWQ 366


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 200/375 (53%), Gaps = 16/375 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y   T VQ  ++   L  KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV  ++  +     +      G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y +  + + I +       I++R + V   ++ + + +I       + I+FC T
Sbjct: 192 ENLSRTYMESPINIEITASGITTDKIEHRILEVREEEKFSLLKDITTVESPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    L G + Q++R   +   + G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370
             VI+ ++    E+ +HR+GRTGRAG  G ++ F+ P       ER   E    + +E  
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYE-----ERFLAEIEEYIGFEIQ 366

Query: 371 --PAPSVEAIRERDA 383
              APS E++ ++ A
Sbjct: 367 KIEAPSKESVVKKKA 381


>gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
 gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
          Length = 474

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 197/344 (57%), Gaps = 5/344 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+  +G+   T +Q   L   L   DV+  AQTG+GKT AF +++ +  L E
Sbjct: 100 DLPLPLMRAIHAQGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 159

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D   P  AP AL +APTRELA+Q+ ++ + L   T + VA  +GG+   ++R  L  
Sbjct: 160 EAPDGQKPG-APRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDGLGK 218

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RR 181
              ++V TPGRL D  + + ++++ ++ +VLDEAD ML +GF  D++ I+  +PKK  R+
Sbjct: 219 KLDLLVATPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKEERQ 278

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT +  I  LA  +  +   V+I       +DID R  LV+  D++  +V +L+ 
Sbjct: 279 TFLFSATFTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQRVYLVSDDDKERLLVKLLQQ 338

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF + R  V +   +L +    V  LSG++ Q +R   L+  R+G  +V +AT
Sbjct: 339 ESFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFREGEIQVLVAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVA RGI + D+  VI+  L  +PE+ +HR GRTGRAG KG+S+
Sbjct: 399 DVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSI 442


>gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 550

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 215/389 (55%), Gaps = 23/389 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   TSVQ A +   L   D++VS+QTGSGKT AF L   + +   N   +  S
Sbjct: 15  AVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPALNRI--SNMPPNKGS 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L + PTRELA+QV    +   A    +  AV +GG+    + + L     ++V TP
Sbjct: 73  GVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPYGAQLKALSRRVDVLVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ K +N+S +  +VLDEAD MLD+GF +DIE I+  +P  R+ L+FSAT+   
Sbjct: 133 GRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVGRTPSDRQTLLFSATLDGT 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGAKNA 247
           I  LA    +D +++ I+ + ++H++I  +++L A    DN      + ++LR      A
Sbjct: 193 IARLAAKMMRDPLQIEISGQKQKHTNI-TQSLLYA---DDNGHKMRLLDHLLRDSNLDQA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF ST+         LA+  F   AL G+++Q++R+  L M++ G+ R+ +ATDVAARG
Sbjct: 249 IVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGMLQKGKLRILVATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R+        
Sbjct: 309 IDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATHSERHKVRRI-----EHF 363

Query: 368 VWEPAPS--VEAIRERDAQRILQDPLFLD 394
           + +P P+  +E +  +   R    P + D
Sbjct: 364 IGQPIPAEVIEGLEPKKTAR----PTYTD 388


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 186/324 (57%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAP 82
           T +QE  +   +  +D++  AQTG+GKT AF L +        ++  P +  + AL + P
Sbjct: 26  TPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPIL-------EKLDPDAVHIQALIVTP 78

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA+Q+  E++ L A    + V    GG  V ++   L+    IVVGTPGRL DHI+ 
Sbjct: 79  TRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQLNKLKKKVQIVVGTPGRLLDHIKR 138

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +++S    +VLDEAD+ML +GF D++E I+  +P KR+ ++FSATI   I  LA+ + 
Sbjct: 139 KTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETPGKRQTMLFSATIPAEIRNLARKHM 198

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           K+   + I         +   A+      +   ++ +++ H    A++FC T+  VS+  
Sbjct: 199 KEPEYMQIEKTQGPAQSVKQIAIHTIDRAKQATLMQLIQTHRPYLAVIFCRTKRRVSKLN 258

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL  + FQ   L G+LSQ +R   ++  RD   ++ +ATDVAARG+D+  +  V + ++
Sbjct: 259 DVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQLLVATDVAARGLDVEGVTHVFNYDI 318

Query: 322 SSNPENLLHRSGRTGRAGRKGMSV 345
             +PE+ +HR GRTGRAG KGM++
Sbjct: 319 PLDPESYVHRIGRTGRAGMKGMAI 342


>gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 587

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 12/333 (3%)

Query: 19  GYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           GY +   VQE ++ P L   + DV+  AQTG+GKT A+GL +   +            P 
Sbjct: 2   GYESPMPVQEEVI-PFLLGEDNDVIALAQTGTGKTAAYGLPILQKINVSQ------YQPQ 54

Query: 77  ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           AL + PTREL +Q+  +L   Y+K    + V    GG S+  + + L+ G H+VV TPGR
Sbjct: 55  ALILCPTRELCLQIADDLND-YSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGR 113

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K +++S++K V+LDEADEML++GF D I  IL + P+ R ML+FSAT+   I 
Sbjct: 114 LIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIA 173

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           ++ K Y KD   + I  +N  + +I     +V   D+  A+  +  Y+     I+FC TR
Sbjct: 174 SITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALKRLADYYPNIYGIIFCRTR 233

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                    L +  +   +L GELSQ +R   +Q  R    ++ +ATDVAARG+D+ DL 
Sbjct: 234 KETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLT 293

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            VI+  L    E+  HR GRTGRAG+ G+++ +
Sbjct: 294 HVINYGLPDEVESYTHRRGRTGRAGKTGIAISI 326


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 15/347 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+++ G+   + +Q+  +   ++ KD++  AQTG+GKT AFG+ +    L   D   
Sbjct: 14  IMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPI----LQRIDTSK 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R L+   +I+V 
Sbjct: 70  PG--PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKPNIIVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S+++  VLDE DEM+D+GF DDI  I+ ++PK+R+ L FSAT+ 
Sbjct: 128 TPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATMP 187

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKN 246
             I  LA ++  + + V++  A+      + +Y    + L DR   +A+  +L     + 
Sbjct: 188 APIRELANSFLNEPEIVKIKAATVTIDLIEQEY----IELPDRQKFDALCRLLDMQSPEL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+      T+ L +  +    L G+LSQQ+R + ++  ++G     +ATDVAAR
Sbjct: 244 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNM 352
           G+D+  +  V + ++  +PE  +HR GRTGRAG+ G+ + FVI + M
Sbjct: 304 GLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREM 350


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 201/368 (54%), Gaps = 12/368 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           VI +A+   GY + T++Q   +   L  +D+L  AQTG+GKT AF L + S L  +    
Sbjct: 19  VIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSRLDPD---- 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P  L + PTRELA+QV    + +     G  V    GG     +   L+    ++
Sbjct: 75  --LRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNPQVI 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DHIR   L +  ++A+VLDEADEML++GF +DI++I D +P +R++ +FSAT
Sbjct: 133 VGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  +A+    D V V IA+ +     I+    +V    + + +  I+        +
Sbjct: 193 MPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPFDGLL 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ + +     L  H F    L+G+++Q+ R   ++ ++ G+  V +ATDVAARG+
Sbjct: 253 IFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  V++ ++ ++P   +HR GRTGRAGR G ++ ++        ER   ++   V+
Sbjct: 313 DVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPR-----ERGLLKSIERVI 367

Query: 369 WEPAPSVE 376
             P PS+E
Sbjct: 368 RRPIPSME 375


>gi|258405872|ref|YP_003198614.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257798099|gb|ACV69036.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 497

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 208/385 (54%), Gaps = 9/385 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E++   I EA    G+ +L  VQ   +   LR  D++V ++TGSGKT AF       LL
Sbjct: 21  LEDLSPRIQEACRSAGWSSLAPVQARSIPVLLRGDDLMVQSRTGSGKTGAF-------LL 73

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +R +P  A   AL + PTRELA QV  E + L+  +G+  A   GGV    +   L+
Sbjct: 74  PMLERLNPDQAACQALILVPTRELARQVHAEAQTLFKGSGLRTAAVFGGVGYKEQFDALR 133

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RR 181
            GAH+VVGTPGR+ DH+         L+ +V+DEAD ML +GF  D+  I    P+    
Sbjct: 134 EGAHVVVGTPGRILDHLLKGSFATKKLRILVMDEADRMLSMGFYQDMVQIRGYLPQSVES 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT    +  L+  +  D   ++++S+    ++I++   +V    R+ +++ IL Y
Sbjct: 194 SYLFSATFPSHVLRLSSQFLIDPGFLSLSSDTLNVAEIEHSYYVVPAVQRERSLLRILEY 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A++FC+T++ V   T VL         L+ +L Q +R   L  ++ G  R+ +AT
Sbjct: 254 LNPVSALIFCNTKSDVQFVTTVLQRFGLDADQLTSDLRQNKRDQVLGRIKAGNLRLLVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  VI  + S +PE  +HR+GRTGRAG  G +V ++    + +  ++ +
Sbjct: 314 DVAARGIDIPDLSHVIQYQPSEDPELYVHRAGRTGRAGASGEAVTLVAGMEKIKLNQVAK 373

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386
           +  + +  +  PS E + +   QR+
Sbjct: 374 KFRIPLQEQELPSEETVNDMVGQRL 398


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 4/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + + LS    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +  T+  + 
Sbjct: 14  IEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQTVQQKK 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA QV   L    A T + +    GG S+  ++R L+ GA 
Sbjct: 74  RNGTPQ----ALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKLEEGAD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P+ +++++FS
Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQIMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       V V ++  N     +      V    +   +  ++     + 
Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  IATDVAAR
Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALIATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++
Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRD 354


>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 423

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 180/339 (53%), Gaps = 1/339 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL +   L+   D   P  
Sbjct: 20  TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLIETKDNVIPNP 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   +      T + V V  GGVS+  +  +L+ GA I+V TP
Sbjct: 80  KLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTENLRGGADILVATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + +SH + +VLDEAD MLD+GF  DI+ IL    + R+ L FSAT    
Sbjct: 140 GRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQTLFFSATFDNK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    +    + +  +N     +      V  S +   +  ++     +  +VF  
Sbjct: 200 IKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARGID+  
Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           LE V++ ++    E+ +HR GRTGRAG  G+++ ++ Q+
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQD 358


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 199/370 (53%), Gaps = 25/370 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 19  KAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + V + IGGVS   + R L+ GA +++ TP
Sbjct: 76  RMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQNRKLEQGADVLIATP 135

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH  RGK L I   + +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P
Sbjct: 136 GRLLDHFERGKLLLIG-TEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI------------DYRAVLVALSDRDNAIVNIL 239
            IT L + +    + V +   +   + I            D RAVL  L D +   +   
Sbjct: 195 EITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLRELIDNEGDEL--- 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                KNAI+FC+ +  +S   + L ++ F V AL G++ Q  R N L   +D +  + +
Sbjct: 252 -----KNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNKLTLLV 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRA R G +  ++  + Q+    +
Sbjct: 307 ASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQKYISAI 366

Query: 360 FREANVSVVW 369
            + +   + W
Sbjct: 367 EKISKEKIEW 376


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 220/392 (56%), Gaps = 18/392 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + + S + A + 
Sbjct: 22  PSVL-RAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKIDAAS- 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
                +A  AL +APTRELA+QV        A    +  + I GG S   +   L+ GAH
Sbjct: 80  -----TATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAH 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FS
Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     + 
Sbjct: 195 ATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAAR
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANV 365
           G+D+  +  V++ ++  + E+ +HR GRTGRAGR G + +FV P+  +R   +   +A  
Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372

Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSI 396
             + E   P+VE +   +AQR+ +   F DSI
Sbjct: 373 QPLTEAELPTVEDV---NAQRVAK---FADSI 398


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 193/352 (54%), Gaps = 4/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A    G+     +Q   + P +  +D+   AQTGSGKT AF L + S ++A   +  P 
Sbjct: 29  KATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRRPK 88

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +A  AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ TP
Sbjct: 89  TA-RALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 147

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +R   L ++  K +VLDE D MLD+GF +D++ I  ++   R+ ++FSAT+   
Sbjct: 148 GRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTVLFSATMPNE 207

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK   K+ +RV +A ++   ++I    V      +   +  +L     K+ I+F  
Sbjct: 208 IAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVFARTKQKRQVLSTMLADETMKSVIIFSR 267

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R TK L    F+   + G  SQ  R  AL   RDG  R+ +ATD+AARGID+P 
Sbjct: 268 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPG 327

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361
           +  V++ +L    E+ +HR GRTGR G  G+++ +    +N + R+ ER+ R
Sbjct: 328 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 379


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 195/348 (56%), Gaps = 12/348 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  +L++  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L + L+ + 
Sbjct: 9   IEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
           + F       AL + PTRELA QV   ++ + + K  +  A+ IGG S+ ++ R L N +
Sbjct: 69  NAF-------ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQLRQLGNRS 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE +L   PK  + L+F
Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVPKDHQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGA 244
           SAT+   I  +++ Y     R++  + +   + I    + V   ++ D  I   L   G+
Sbjct: 182 SATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELIDQFLARKGS 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+ S  +  K L E       + G+L Q +R   +   R G  R+ IATDVA
Sbjct: 242 --ILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRILIATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++ F+ P +
Sbjct: 300 ARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDD 347


>gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044]
 gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 457

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 203/366 (55%), Gaps = 10/366 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +  RF   S 
Sbjct: 18  LNELGYLSMTPVQAAALPAILGRKDVRVQAKTGSGKTAAFGLGLLQHI--DPARFETQS- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L +  TRELA QV  EL  L      + + +  GG     +R  LQ+  HI+V TPG
Sbjct: 75  ---LVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGAQRDSLQHAPHIIVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI
Sbjct: 132 RLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTLLFSATWPAAI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             ++   Q++   + I + +   + I+ +   V+   +   +  +L  H   + +VFC+T
Sbjct: 192 AAISGRVQRNPQTIEIDTVDALPA-IEQQFFEVSRHGKIALLQRLLSQHQPASCVVFCNT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L       ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  L
Sbjct: 251 KRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVRVLVATDVAARGLDIKSL 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPA 372
            LV++ EL+ +PE  +HR GRT RAG +G+++ F  P+  Q RA  L     +S+ W PA
Sbjct: 311 ALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQ-RATILADMLQLSLNWLPA 369

Query: 373 PSVEAI 378
           P+   I
Sbjct: 370 PTGNTI 375


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 6/346 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y    + + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEI 357


>gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 487

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 197/359 (54%), Gaps = 10/359 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +  V+ EA  +  +   + +Q   L   L+ KDV+  A+TGSGKT AF L +   LL 
Sbjct: 63  QGVVDVLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLE 122

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              R        AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L   
Sbjct: 123 TPQRL------FALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKK 176

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            H+++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +I+ IL   PK+RR  
Sbjct: 177 PHVMIATPGRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTY 236

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           ++SAT++  +  L +   +D V+V ++++ +  S +    + +    +D  +V+IL    
Sbjct: 237 LYSATMTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKYKDCYLVSILNEFA 296

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VFCST  +  R   +L       + L G+LSQ +R   L   +     + IATDV
Sbjct: 297 GNSFMVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDV 356

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359
           A+RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q    + +R E+L
Sbjct: 357 ASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQL 415


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/385 (34%), Positives = 205/385 (53%), Gaps = 17/385 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 29  NLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSLQKLTQR 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118
           +++     +P  L + PTRELA QV        + ++WL + T       +GG S  ++ 
Sbjct: 89  SEK--SGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVT------LVGGSSFGQQI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     ++V TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ ++P+
Sbjct: 141 KALSRPIDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPE 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
            R+ L+FSAT   A+  LA+   K+   + I  E++Q   I+ + +     +  N +++ 
Sbjct: 201 DRQTLLFSATWDGAVGKLARKLTKNPEVIEIEREDKQ-GKIEEQLLYCDDKNHKNRLLDH 259

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++
Sbjct: 260 ILRDANIDQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKI 319

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N      
Sbjct: 320 LVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVH 379

Query: 358 RLFREANVSVVWEPAPSVEAIRERD 382
           ++ R  N  +       +E  R+R+
Sbjct: 380 KIERYINHKLPEVVIEGLEPTRKRN 404


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 159/527 (30%), Positives = 266/527 (50%), Gaps = 27/527 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDV--LVSAQTGSGKTVAFGLALASTLL 63
            +P+ +  AL ++GY + T +QE  + P L EKD   +  AQTG+GKT AF L L    L
Sbjct: 7   TLPESLLRALEDKGYKSPTDIQEKAI-PLLLEKDTDFVGQAQTGTGKTAAFSLPL----L 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+ D  S +    A+ ++PTRELA Q+  E++       + +    GGV +  + R L+ 
Sbjct: 62  AKID--SKSGDVQAIVLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLKK 119

Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G   +VVGTPGR+ D I+   L + + K  VLDEADEMLD+GF DD++ IL     K++ 
Sbjct: 120 GRPQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKKKT 179

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            M+SAT+  AI +L K+Y  +   + I  +   + DI+ +  L+   +   A+  IL   
Sbjct: 180 WMYSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSL 239

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC T+    + +       F   AL G++SQ +R   ++  +  + ++ + TD
Sbjct: 240 TDYYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVCTD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ +L  VI+  L  + E+ +HR GRTGRAG+KG +  VI  + + R   L R 
Sbjct: 300 VAARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIRMLERL 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEK------ 415
            N  +     PS++ I++   +  +    F+ + ++  E       + K   E+      
Sbjct: 360 MNTKIELGTLPSIDEIKKALVKNEVSKLEFVAEKLESSENLDSSFSIFKESLEEMEKEAL 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR----FRDDS----RAFKVGGGSRDNFKGSS 467
           +   F  + +  +    + + + L  G +R     R++S    R  + G G  DN  G +
Sbjct: 420 LKVMFNYMFKKNMDRYSQKSSIELSKGSERGDRNSRNNSDRRERPERSGRGRGDN--GYA 477

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            F + VG K   + +  +  +  ++G+  + I  + ++   +F EVS
Sbjct: 478 RFYVGVGKKHGVDLKEFLSSVSGATGVAERDIRRVDLKDQFSFFEVS 524


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 8/350 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L  +D++  A+TGSGKT AF LAL + L A +          A+ + P
Sbjct: 1   MTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLDARSFDVQ------AMILCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQFL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           ++   + +A E    S I  R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 175 RNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +PE  +HR GRTGRA + G ++ ++  +   R   + +     V W P
Sbjct: 294 TPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHP 343


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 16/379 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GG     +   L++GAHI+VGTPG
Sbjct: 75  --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  L  +VLDEAD ML++GF+D ++ I D +P  R+ L+FSAT    I
Sbjct: 133 RVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTLLFSATYPTQI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++AK   ++ V V + S +   S   +   + +  DR  A+  +L  H  ++ ++FC+T
Sbjct: 193 ASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRPESCVIFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      +  L ++ F  +AL G+L Q+ER   L +  +    + +ATDVAARG+D+ +L
Sbjct: 253 KREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + VI+  L+ + E  +HR GRTGRAG KG++  +       +   L    +  +  E  P
Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALP 372

Query: 374 SVEAIRERDAQRILQDPLF 392
                    A+ +L  P F
Sbjct: 373 ---------AEHLLDQPTF 382


>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 422

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 14/366 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++  +   T +Q   + P L  KD++ +AQTG+GKT+AF L     L  E  +      
Sbjct: 17  LAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQLLSTEPRQ----PG 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+Q+   L  +   TG+  AV +GG++   + RD++ GA+IVV TPGR
Sbjct: 73  VRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQLRDIRGGANIVVATPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +    +N++ ++ ++LDE+D MLD+GF   I+ I+ + P +R+ L+FSAT+  ++ 
Sbjct: 133 LYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPAERQTLLFSATLESSVK 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L + + ++AVR+ + S ++    +D     V   DR   ++ ++      + +VF  T+
Sbjct: 193 QLVETHVRNAVRIELGSISKPSEQVDLHLYEVD-QDRKFGLLEMMLREEQGSFLVFARTK 251

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  K LA+  F+  A+ G+ SQ +R  AL+  ++G  RV +ATDVAARGI +  + 
Sbjct: 252 HGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVLVATDVAARGIHVEGIS 311

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQR--RAERLF------REANV 365
            V++ +L   PE+ +HR GRTGRAG KG  S F          R ER        RE + 
Sbjct: 312 HVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGRIERTLSVKLKRREVSA 371

Query: 366 SVVWEP 371
           S+V  P
Sbjct: 372 SIVAAP 377


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 134/441 (30%), Positives = 232/441 (52%), Gaps = 18/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+   T +Q   +   L   D++  AQTG+GKT AFG+     L A+
Sbjct: 8   NLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIERLDAK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          AL +APTRELA+QV  EL  +     V      GG  + R+ R L+   
Sbjct: 68  SRYIQ------ALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKNP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH+  K LN+ H++ V+LDEADEML++GF +DIE IL + P  R+ L+F
Sbjct: 122 QIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPPTRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A  +      + + ++     +ID   + +  S + + +  ++     +
Sbjct: 182 SATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRLIDTDSPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  T+  V   T+ L +  +    L G+L+Q +R   ++  + G   + +ATDVAA
Sbjct: 242 LSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++ FV P+    + + + R  N
Sbjct: 302 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFG-QIKTIERVTN 360

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPEKIAAGF 420
             +    AP+++ I E + +   Q+   +  ++    +    +   LL +++  ++ A  
Sbjct: 361 KKMSRRHAPTLDEILEGNLKLAAQE--LIKRVEAKNSQEYTTLAQELLEEYEAVELIAAA 418

Query: 421 LRIHRAGLCAPEEITPVSLVS 441
           L+    GL    + TPV + S
Sbjct: 419 LK----GLTKEPDATPVQISS 435


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score =  210 bits (535), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +   L+A+  R  P + 
Sbjct: 17  LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTREL  Q+   L+    K+ + + + +GGVS++++   L  G  I+V TPGR
Sbjct: 77  -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK R+ L+FSAT+   I 
Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
            LA  Y  D V+V ++   +    ++     V   D    I+   L  +    +++F  T
Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV +ATDVAARGID+P +
Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + +L   P+  +HR GRT R GR G+++ F  P  ++  R  E+L     ++V   
Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374

Query: 371 PAPSVEA 377
            AP+ +A
Sbjct: 375 EAPADQA 381


>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
 gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
          Length = 469

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 194/359 (54%), Gaps = 14/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T++Q+  L   L+ +D+L  A+TGSGKTVAFG+ +         R  PA  
Sbjct: 19  LDTLGYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGILH-------RLDPARL 71

Query: 75  PL-ALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  L + PTRELA QV  EL  L    G + V    GGV +  +   L++G HIVVGTP
Sbjct: 72  KVQGLVLCPTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQVTSLEHGVHIVVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    +N+  +  +VLDEAD M D+GF D++  I+ + P+ R+ L+FSAT    
Sbjct: 132 GRIRDHLARGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACPRTRQTLLFSATYPDN 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKNAIVF 250
           I      +  D V V +   + QH+    + +   +   +RD AI  +L +    + +VF
Sbjct: 192 IKQTTAEFLNDPVEVVV---DAQHTATQIKQLFYEIGFDERDAAIGRLLNHFKPLSTLVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR       + L    F  + L G+L Q+ER   L +  +    V +ATDVAARG+D+
Sbjct: 249 CNTRVHCRELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSVLVATDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
             L+ V++A++S + E  +HR GRTGRAG  G+++ +   N ++    +      +V W
Sbjct: 309 SRLDAVMNADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVSLIEDYQKTTVQW 367


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 191/338 (56%), Gaps = 9/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252
             L++ Y      + I +       I++  +  A+ D   +++ ++       + I+FC 
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTMIENPDSCIIFCR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ +
Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           +  VI+ ++    E+ +HR+GRTGRAG  G ++ F+ P
Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITP 348


>gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
 gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
          Length = 466

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++  Y+++T +Q A L   L   D++  A+TGSGKT AFGLAL + L     RF    A
Sbjct: 24  LAQLEYLSMTPIQAASLPLALAGNDLIAQAKTGSGKTAAFGLALLNRL--NTSRF----A 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L   +  + V   +GG ++  +   L+ G HIVVGTPG
Sbjct: 78  VQAMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQANSLEKGVHIVVGTPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  L  +VLDEAD MLD+GF DDI ++    P +R+ L+FSAT    I
Sbjct: 138 RIMDHMERGYLKLDELNTLVLDEADRMLDMGFHDDIAYVAKRCPAQRQTLLFSATYPEGI 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ + +    V +  E  + + I  R   V   +R +A+V +L+++   + + FC+T
Sbjct: 198 ALLARQFLRQPKEVKLL-ELHEETKIRQRFYEVKDDERLDAVVRLLKHYRPVSTLAFCNT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL       + L+G+L Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 257 KQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCSVLVATDVAARGLDIDQL 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           E VI+ +++ +PE  +HR GRTGR   +G ++ +     +RR
Sbjct: 317 EAVINVDVTPDPEIHIHRIGRTGRGDEEGWALSLCSSGDRRR 358


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +   L+A+  R  P + 
Sbjct: 17  LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTREL  Q+   L+    K+ + + + +GGVS++++   L  G  I+V TPGR
Sbjct: 77  -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK R+ L+FSAT+   I 
Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
            LA  Y  D V+V ++   +    ++     V   D    I+   L  +    +++F  T
Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV +ATDVAARGID+P +
Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + +L   P+  +HR GRT R GR G+++ F  P  ++  R  E+L     ++V   
Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374

Query: 371 PAPSVEA 377
            AP+ +A
Sbjct: 375 EAPADQA 381


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 192/348 (55%), Gaps = 11/348 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  AQTG+GKT AFGL +   L  ++D         A+ I PTRELA+Q   EL
Sbjct: 3   LEGKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSIQ------AIVIEPTRELAIQTQEEL 56

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L       V V  GG  + R+ R L+    I+VGTPGRL DH++   ++IS +K +VL
Sbjct: 57  FRLGRDEKARVQVVYGGADIRRQIRALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVL 116

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEADEMLD+GF  DIE IL+ +  K + L+FSAT+   I  + + +  D   V I  +  
Sbjct: 117 DEADEMLDMGFIQDIESILNYASSKHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKEL 176

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             + ID   V    +++ + +  ++       A++F  T+  V   T+ L    +    +
Sbjct: 177 TANLIDQYFVRAKENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGI 236

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+LSQ +R + L+  R G+  + +ATDVAARG+D+  +  V + ++  +P++ +HR GR
Sbjct: 237 HGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGR 296

Query: 335 TGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVVWEPAPSVEAIR 379
           TGRAG+ GMSV FV P  +   R  E+L  +    ++ +P    EA +
Sbjct: 297 TGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKK--MMLLKPPTDEEAFK 342


>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 466

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 202/387 (52%), Gaps = 26/387 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--------- 65
           LS +G  + T VQ   ++P L  +DV+  ++TG+GKT+AFG+   + ++           
Sbjct: 1   LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               + R      P  + + PTRELA QV  EL  +    G+  +   GGVS   + R L
Sbjct: 61  GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  ++VGTPGR+ DHI    L++S    VVLDEADEML++GF +D+E IL+    K R
Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180

Query: 182 ----MLMFSATISPAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVAL-SDRDN 233
                L+FSAT  P +  +  +YQ+D + ++I  E   +R  S + + A+ V   +D   
Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKK 240

Query: 234 AIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           AI+ +I+   G    IVF  T+                  A+ G++ Q++R   L   R 
Sbjct: 241 AILEDIIALFG--KTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRA 298

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D++LVI  E   + +  +HRSGRTGRAG  G+SV +  QN 
Sbjct: 299 GAFNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQ 358

Query: 353 QRRAERLFREANVSVVWE--PAPSVEA 377
            R   R+ +       +E    PS EA
Sbjct: 359 ARDIVRIEKSLGHGFKFELLGPPSTEA 385


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 200/367 (54%), Gaps = 6/367 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +   L+A+  R  P + 
Sbjct: 17  LSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEKLVADGRRPDPRNI 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTREL  Q+   L+    K+ + + + +GGVS++++   L  G  I+V TPGR
Sbjct: 77  -RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK R+ L+FSAT+   I 
Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCST 253
            LA  Y  D V+V ++   +    ++     V   D    I+   L  +    +++F  T
Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV +ATDVAARGID+P +
Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + +L   P+  +HR GRT R GR G+++ F  P  ++  R  E+L     ++V   
Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQIAVASG 374

Query: 371 PAPSVEA 377
            AP+ +A
Sbjct: 375 EAPADQA 381


>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
 gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
          Length = 468

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L + 
Sbjct: 13  FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L     + S   A  AL + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+R
Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT    I  L+K + KD   V++ +   +  DI+     V+   +   ++ ++L
Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRQAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQR 361


>gi|86130260|ref|ZP_01048860.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 638

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 203/351 (57%), Gaps = 12/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+++ G+   + +QE  + P L   ++D++  AQTG+GKT AFG  L   + A      
Sbjct: 14  QAIADMGFETPSKIQEEAI-PQLLAEDRDMVALAQTGTGKTAAFGFPLLQNIDA------ 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +     L IAPTREL +Q+  E++ LYAK   GV V    GG ++  + R++  GA IV
Sbjct: 67  SSKTTQGLIIAPTRELCLQITNEMK-LYAKHIKGVRVVAVYGGSNIQEQAREISRGAQIV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D +R + ++I+ L   VLDEADEML++GF +DI  IL  +P+ +   +FSAT
Sbjct: 126 VATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  +AK +  D + + +  +N    ++ +   +V   DR  A+  +   +    ++
Sbjct: 186 MPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYVVHTRDRYQALKRLSDANPDIFSV 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ +ATDVAARGI
Sbjct: 246 IFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLVATDVAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+ D+  VI+ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ ++L
Sbjct: 306 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIKQL 356


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 201/347 (57%), Gaps = 15/347 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+++ G+   + +Q+  +   ++ KD++  AQTG+GKT AFG+ +    L   D   
Sbjct: 20  IMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPI----LQRIDTSK 75

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R L+   +I+V 
Sbjct: 76  PG--PQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKTNIIVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S+++  VLDE DEM+D+GF DDI  I+ ++PK+R+ L FSAT+ 
Sbjct: 134 TPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLFFSATMP 193

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKN 246
             I  LA ++  + + V++  A+      + +Y    + L DR   +A+  +L     + 
Sbjct: 194 APIRELANSFLNEPEIVKIKAATVTIDLIEQEY----IELPDRQKFDALCRLLDMQSPEL 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+      T+ L +  +    L G+LSQQ+R + ++  ++G     +ATDVAAR
Sbjct: 250 AIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNM 352
           G+D+  +  V + ++  +PE  +HR GRTGRAG+ G+ + FVI + M
Sbjct: 310 GLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREM 356


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E+GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L     R    
Sbjct: 96  KTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHDHGSR---- 151

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV      +      + V    GG     +   L+ G  +VVGT
Sbjct: 152 --PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGVDVVVGT 209

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L+ S L+ +VLDEADEML +GF DD+E+IL+  P++R+M++FSAT+  
Sbjct: 210 PGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQMVLFSATMPS 269

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y  +   + I S +++   I  R + +  S +  A+  +L     +  I+F 
Sbjct: 270 EIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGEGVIIFA 329

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L      V  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 330 RTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAARGLDVD 389

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 390 RISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPR 429


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 143/413 (34%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT VQ   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 25  MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 84

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 85  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 136

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 137 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 196

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD + + +   +    +ID +   V  + R  A
Sbjct: 197 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 255

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 256 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 315

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 316 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 375

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 376 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 427


>gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 481

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q+ R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFTIRKVNAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/364 (36%), Positives = 201/364 (55%), Gaps = 6/364 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L   LLA+  R    + 
Sbjct: 32  LFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 91

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APTREL  Q+   L+    K+ + + V +GGVS+++++  L+ G  I+V TPGR
Sbjct: 92  -RTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQLQLEKGTDILVATPGR 150

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D I  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PKKR+ ++FSAT+  AI 
Sbjct: 151 LLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPKKRQTMLFSATMPKAIA 210

Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            LA  Y  D V+V +    +    ++ Y   +   +D+   +   L  +    A+VF  T
Sbjct: 211 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAMVFLRT 270

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    + V ++ G  SQ +R  AL+  RDG  +  IATDVAARGID+P +
Sbjct: 271 KHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 330

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + +L   P+  +HR GRT RAGR G+++ F  P   +  R  ERL    +++V   
Sbjct: 331 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM-GIDITVASG 389

Query: 371 PAPS 374
            AP+
Sbjct: 390 EAPA 393


>gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 444

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/370 (36%), Positives = 203/370 (54%), Gaps = 12/370 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFS 70
           +A+S++GY N + +Q   + P L   DVL SAQTG+GKT  F L L   +L+EN  ++F 
Sbjct: 14  KAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH-ILSENPKEKFR 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A   L + PTRELA QV   ++       +   V  GGV+   +  +++ G  ++V 
Sbjct: 73  PIRA---LVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIRKGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      L++  ++  VLDEAD MLD+GF  DIE ++   P KR+ LMFSAT S
Sbjct: 130 TPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA N  K+ V+V    EN     I  +   VA   +   ++ ++     K  +VF
Sbjct: 190 KDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKLISDGNWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ TK +        A+ G  SQ  R+ AL+  +DG  RV +ATD+AARG+D+
Sbjct: 250 TRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA-NVS 366
           P L  VI+ E+ +  E+ +HR GRTGRAG KG ++ ++  +     R  E+L  E   V 
Sbjct: 310 PLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEKLIGEKLKVE 369

Query: 367 VV--WEPAPS 374
           ++  +EP P+
Sbjct: 370 ILEGFEPDPN 379


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/383 (35%), Positives = 205/383 (53%), Gaps = 8/383 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +GY   T +Q   +   L  +D+L  AQTG+GKT AF L     L+  N R  P  
Sbjct: 15  ALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSIQRLVEANKRVLPTH 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L +APTRELA Q+    +     + + VA   GG S+++ R+DL  G  I+V TPG
Sbjct: 75  CRM-LVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQDLSRGVDILVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    LN+S ++ +VLDEAD+MLDLGF   +  I+   P+KR+ L FSAT+  AI
Sbjct: 134 RLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRKRQTLFFSATMPAAI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +  +   V++   +     ++     V   ++   +  +L     + A+VF  T
Sbjct: 194 RDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILLADPAIELALVFTRT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  K+LA +     A+ G  SQ +R  AL   R G+ RV +ATD+AARGID+P +
Sbjct: 254 KHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRVLVATDIAARGIDIPGV 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWE 370
             V + EL +  E  +HR GRT RAGR G+++    ++ +   +  E+L R+  ++VV  
Sbjct: 314 SHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYLKDIEKLTRQ-KITVVPL 372

Query: 371 PAPSV---EAIRERDAQRILQDP 390
           PA  V   E I+ +  + I  DP
Sbjct: 373 PADFVKRAETIKSQRVKAIGADP 395


>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 647

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L I+PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I + +  + +
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGELAANRNQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    D  R+ I + +  ++D+            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G +V
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAV 355


>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 460

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 212/367 (57%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           R        AL + PTRELA QV  ++  L        V+ +C GG+ +  +   L++GA
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRIIHNIKVLTLC-GGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+F
Sbjct: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H   
Sbjct: 185 SATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALEALLLHHQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364

Query: 366 SVVWEPA 372
           ++  EP+
Sbjct: 365 AI--EPS 369


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/351 (36%), Positives = 194/351 (55%), Gaps = 7/351 (1%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F N+   P++I  A++ERGY   T +Q   +   L   D+L  AQTG+GKT +F L L  
Sbjct: 3   FSNLALSPEII-RAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLH 61

Query: 61  TLLAENDRFSPASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +  +  S ++   P+ AL + PTRELA QV   +        +      GGVS++ +
Sbjct: 62  QLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINPQ 121

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L++G  IVV TPGRL DH+    +N+S ++ +VLDEAD MLD+GF  DI  I+   P
Sbjct: 122 KRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSILP 181

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ L+F AT S  I  LA         + +A  N     I  RA  V    +   + +
Sbjct: 182 KKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQRAYQVDRDKKPQLLAH 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++       +VF  T+    R  K L +   Q +A+ G  SQ  R++AL   ++G  +V
Sbjct: 242 LIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNGSLQV 301

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATD+AARG+D+ +L  V++ +L   PE+ +HR GRTGRAG +G ++ ++
Sbjct: 302 LVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLV 352


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 197/359 (54%), Gaps = 9/359 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + I  AL   GY   T VQ  ++   L ++D++V +QTGSGKT A+G+ L 
Sbjct: 4   KRFTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++      P AL + PTRELA+QV  ++  +     +      G    H ++ 
Sbjct: 64  EQVEWNENK------PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  +  +V+DEADEML++GF + ++ I+ + P+ 
Sbjct: 118 ELKQRTHIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRN 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    +  LA  Y     ++ I +     + ID+  V V  +D+   + N+L
Sbjct: 178 RVTMLFSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQVKEADKLAVLQNLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + IVFC T+  V    + LA+  +    + G + Q+ER   +   R G+ R  I
Sbjct: 238 ITTNPDSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++  V P++  R A+
Sbjct: 298 ATDVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLAD 356


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 187/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A++E+GYV  T +QE  + P L  +D++  AQTG+GKT AF L +   LL+ 
Sbjct: 7   NLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ-LLSA 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R        AL + PTRELA+Q+          T +   V  GGV+   +   LQ G 
Sbjct: 66  RPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I    +++S ++  VLDEAD MLD+GF  DI+ IL   PK+R+ L F
Sbjct: 126 DLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TLA +   D V V +         I    +    +++ + ++++LR     
Sbjct: 186 SATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLRERSEG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    R  ++L +   +  A+ G+ SQ  R  A+   R GR RV IATD+AA
Sbjct: 246 SVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLIATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L LVI+ +L    E  +HR GRTGRAG  G ++
Sbjct: 306 RGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAI 345


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 193/345 (55%), Gaps = 8/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + + L     
Sbjct: 10  PKVLA-AVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPMLTRLERGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P  L + PTRELA QV            + +A+ IGGVS   + + L+ GA +
Sbjct: 69  R---ARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKKLERGADV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSA
Sbjct: 126 LIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHG-- 243
           T+ P IT L + + +  VRV ++       +I  R V        +   + +++R  G  
Sbjct: 186 TMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDLIRAEGDE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F   AL G++ Q+ R   L+  R G+ ++ +A+DV
Sbjct: 246 LKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLKLLVASDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G +  ++
Sbjct: 306 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIV 350


>gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 427

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/344 (36%), Positives = 188/344 (54%), Gaps = 6/344 (1%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+  +  I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   L
Sbjct: 63  LYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDAL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D I    ++++ L   VLDEAD MLD+GF  DI+ IL   P KR+
Sbjct: 119 RGGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+ 
Sbjct: 179 TLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  ++L +      A+ G  +Q  R  AL   ++   R  IAT
Sbjct: 239 ASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++
Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAI 342


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/343 (38%), Positives = 186/343 (54%), Gaps = 9/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E GY + T +Q   +   LR +DVL  AQTG+GKT +F L +   L     R  
Sbjct: 25  ILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIHRLARGRAR-- 82

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P +L +APTRELA QV  + E       + +A+ IGGVS   +   L  G  +++ 
Sbjct: 83  -ARMPRSLILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAKLTRGVDVLIA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH     L ++ L+ +V+DEAD MLD+GF  D+E I   +P  R+ L FSAT+ 
Sbjct: 142 TPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTRQTLFFSATMP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAK 245
           P I  L   +     R+ +A        I  R   +  S  D      LR+        K
Sbjct: 202 PEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLP-SGEDKLKRAALRHLVETAENLK 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           N I+FC+ + +V    K L EH F    + G+L Q  R+  LQM RDG  ++ +A+DVAA
Sbjct: 261 NGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLKLLVASDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+PD+  V +  +  N ++ +HR GRTGRAGR G +V ++
Sbjct: 321 RGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLV 363


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 162/521 (31%), Positives = 269/521 (51%), Gaps = 34/521 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + +    L++ D
Sbjct: 22  PSVL-RAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPI----LSKID 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             S A+   AL +APTRELA+QV        A    +  + I GG S   +   L+ GAH
Sbjct: 77  VASTATQ--ALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAH 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FS
Sbjct: 135 VVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     + 
Sbjct: 195 ATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAAR
Sbjct: 255 MIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365
           G+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +R   +   +A  
Sbjct: 315 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPR--ERHLLKAIEKATR 372

Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE-- 414
             + E   P+VE +   +AQR+ +   F DSI            +K+V     +HD    
Sbjct: 373 QPLTEAELPTVEDV---NAQRVAK---FADSITAALGAPGIDLFRKLVQDYEREHDVPMA 426

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA      R G    EE   ++    R+R    +   +     R   +  + + ++VG
Sbjct: 427 DIAAALAVQSRDG----EEFL-MAPEPPRERRERHTERRERTEKPRST-RPLATYRIAVG 480

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            + K     ++  +    G++R   G I + PD + VE+ A
Sbjct: 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPA 521


>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 475

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 192/343 (55%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y  +T +Q   L   L   D++  A+TGSGKT AF L L + L     RF    A
Sbjct: 33  LQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTNL--NPRRF----A 86

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             A+ + PTRELA QV +EL  L  +A    ++++ +GG ++  +R  L++GAHIVVGTP
Sbjct: 87  VQAMVLCPTRELADQVTQELRRLARFADNIKILSL-VGGSTMRPQRDSLEHGAHIVVGTP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L +  L  +VLDEAD MLD+GF DDI F++   P +R+ ++FSAT    
Sbjct: 146 GRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQRQTMLFSATYPEG 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ + +    V +  E  + S I  R   V   +R  A+  +L+++   + + FC+
Sbjct: 206 IARLAQKFMRKPQEVKL-PEQHEGSKIRQRFYEVKHEERLQAVATLLKHYRPVSTLAFCN 264

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+        VL       + L+G++ Q+ER   L    +    V +ATDVAARG+D+  
Sbjct: 265 TKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQ 324

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           LE VI+ +++ +PE  +HR GRTGRA  +G ++    P +M R
Sbjct: 325 LEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHR 367


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+E GY   + +Q A +   L   D+L  AQTG+GKT AF L + + L   
Sbjct: 22  QLPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPMLAKLDLA 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + R      P  L + PTRELA+QV     ++ +      V    GG S+  + R L  G
Sbjct: 82  DTR------PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQLSRG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DH+  + L +  LKA+VLDEADEML +GF DD+E+IL+ +P +R+  +
Sbjct: 136 AQVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQTAL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ + ++   + I +     + I  R  LV   D+ +A+  IL    +
Sbjct: 196 FSATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDKLDALTRILDAEES 255

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A+VF  T+ +       LA   +   AL+G+++Q  R   ++ +++G   + IATDV
Sbjct: 256 FDAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIVIATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           AARGID+P +  VI+ ++  + E  +HR GRTGRAGR+G+++ FV P+   M +  ER  
Sbjct: 316 AARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKMIERAT 375

Query: 361 REANVSVVWEPAPSVEAIR 379
           R+    +       V  +R
Sbjct: 376 RQPITPIALPSGEEVTNLR 394


>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 500

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 187/346 (54%), Gaps = 12/346 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +   LS  G    T VQ   +   L   DV+V AQTG+GKT+AF L +   +    
Sbjct: 10  VSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPILERIDTTK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125
           +         AL + PTRELA+Q+  EL  L    G  +    GG  V  + R L+N   
Sbjct: 70  NHTQ------ALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIRKLRNSWP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           HIV+ TPGRL DH+R + + +  ++ +VLDEAD+ML +GF  D+E I+ S P++ R+ ++
Sbjct: 124 HIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPRQHRQTML 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYH 242
           FSAT+   I  L   Y      VNI  E      I  R V +  +DR  ++ +V ++  +
Sbjct: 184 FSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKI--RQVAIETTDRRKEDTLVELIGKY 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VFC T+    +  + L E       L G+LSQ +R   ++  R  R +V IATD
Sbjct: 242 QPYLAVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQVLIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+  +  V + ++  +PE  +HR GRTGRAG +GM+V ++
Sbjct: 302 VAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLV 347


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 186/341 (54%), Gaps = 11/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I + L  +G+   + +QE  + P L  ++ D++  AQTG+GKT AFGL +         +
Sbjct: 13  ITQCLEAKGFKEPSPIQEQAI-PVLLSQDHDIIGQAQTGTGKTAAFGLPIVQ-------K 64

Query: 69  FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             P    P AL + PTRELA+QV  E++      G+      GG  +  ++R L+ G  +
Sbjct: 65  IEPGLKKPQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQKRALKKGVDL 124

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR    I    L +  L+ +VLDEADEML++GF +D+E +L +SP  R +LMFSA
Sbjct: 125 VVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASPDDRTVLMFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ P +  +A++Y  +++ +   SE      ID         ++  A+  I+        
Sbjct: 185 TMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCRIMDLEKDFYG 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V + +  LA   +    + G+++Q+ R   L+  R+    + IATDVAARG
Sbjct: 245 IIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISLLIATDVAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ DL  +++  L    E+ +HR GRTGRAG+ G ++ +I
Sbjct: 305 IDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLI 345


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 7/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
             VI+ ++    E+ +HR+GRTGRAG  G ++ F+ P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITP 348


>gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
 gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
          Length = 480

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 8/367 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           + +AL    +   T VQ   L+    ++D++V +QTGSGKT A+GL +   +  AEN   
Sbjct: 15  LKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAEN--- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA+QV ++L  L     +  A   G      ++ +L    HIV 
Sbjct: 72  ----KPQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQKNHIVC 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++ +LK  VLDEADEML++GF D +  I+   P KR  ++FSAT+
Sbjct: 128 GTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  L++ + +    + IA E      I +  +      + + +   +      + I+
Sbjct: 188 SDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCII 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V+  T  L E       + G + Q++R   +   ++G  R  IATD+AARGID
Sbjct: 248 FCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  VIH +L    E  +HR+GRTGRAG+ G ++  + +N +   + L  EA +    
Sbjct: 308 VSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGIDFKT 367

Query: 370 EPAPSVE 376
           +P P+ E
Sbjct: 368 QPYPTKE 374


>gi|148271949|ref|YP_001221510.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829879|emb|CAN00803.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 403

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 194/360 (53%), Gaps = 6/360 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I   L E G  +   +Q A +   L  +DVL   +TGSGKT+AFG  L   LL END 
Sbjct: 27  QNIVRVLEELGAASPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLL-ENDG 85

Query: 68  --RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APTRELA+Q+ R ++ +    G+      GGV   ++   LQ G 
Sbjct: 86  AKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGV 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I    L++S +   VLDEAD M DLGF + ++ IL    K  + L+F
Sbjct: 146 DILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDGQRLLF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL   +  +     +A E++  S ID+R +L+    RD A +      G  
Sbjct: 206 SATLDKGVATLVNEFLPNPSVHEVAGEDQASSTIDHRVLLI--EQRDKAAIIEQLSSGEG 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  TRA   +    L +      +L G+L+Q  R+  LQ++  G+ RV +ATDVAA
Sbjct: 264 KTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVI A+     ++ LHR+GRTGRAG++G  V +I +  +RR + L   A +
Sbjct: 324 RGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRMDDLLGRAEI 383


>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 647

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALAGQETF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L I+PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I + +  + +
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIGELAANRNQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    D  R+ I + +  ++D+            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G +V
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAV 355


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 7/351 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I +A+ E+GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L      +F
Sbjct: 12  ILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGPKRKF 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A   L + PTRELA QV   +E       +   V  GGV V+ + + L+ G  ++V
Sbjct: 72  NQVRA---LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L+FSAT 
Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK   KD V +++A  N     ++    ++    +   +  +++ +  K  +V
Sbjct: 189 SDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D
Sbjct: 249 FSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++    A+ LF
Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EAKELF 356


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 11/345 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +Q   +   L  +D++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQKIIKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P  L + PTRELA QV +  + LYA+    V     +GG S  ++ + L  
Sbjct: 69  SEQ--PGKGPRVLVLTPTRELAQQVEKNAQ-LYAQNMKWVRTVTLVGGSSFGQQIKALSR 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ + P+ R+ L
Sbjct: 126 PIDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILR 240
           +FSAT   A+  LA+   K+   + I    R  +       L+   DR++    + +ILR
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVIEI---ERAEAQGKIEEQLLYCDDRNHKNRLLDHILR 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F +T+A        L E  F    L G++ Q  R+  L  +R GR ++ +A
Sbjct: 243 DANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARGID+P +  VI+ +L    E+ +HR GRTGRAGR G++V
Sbjct: 303 TDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAV 347


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 195/350 (55%), Gaps = 5/350 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G    T +QE  +   L+ +D++  AQTG+GKT AFGL L   LLA+  R    + 
Sbjct: 38  LFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 97

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APTREL  Q+   L+    K+ + + V +GGVS+++++  L+ G  ++V TPGR
Sbjct: 98  -RTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQLQLEKGTDVLVATPGR 156

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PKKR+ ++FSAT+  AI 
Sbjct: 157 LLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIA 216

Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            LA  Y  D V+V +    +    ++ Y   +   +D+   +   L  +    AIVF  T
Sbjct: 217 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRT 276

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    + V ++ G  SQ +R  AL+  RDG  +  IATDVAARGID+P +
Sbjct: 277 KHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 336

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
             V + +L   P+  +HR GRT RAGR G+++ F  P   +  R  ERL 
Sbjct: 337 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386


>gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 481

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+    +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEISKAIGP 371

Query: 374 SVEAIRERDA 383
           S E + +  A
Sbjct: 372 SKEEVMKEKA 381


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score =  210 bits (534), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 191/349 (54%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 69  --ARARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDALIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     R+ +A +      I+   V V  S RD         +  ++ 
Sbjct: 187 TMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEKRTVLRALID 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  N I+FC+ +  V    K L ++ +   A+ G+L Q +R+  L   R+G  R+ 
Sbjct: 247 GEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDSFREGSLRIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G ++ +
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITI 355


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 189/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I EAL+   Y   T +Q   +   L   D++  AQTG+GKT AF L + + L  +
Sbjct: 2   QLSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLD 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A AP  L ++PTRELAVQ+ +            +    GGV  + + R L+ G 
Sbjct: 62  RSR-ADACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+ + TPGRL D +    +++S  K  VLDEAD MLD+GF   ++ I+   PK+R+ + F
Sbjct: 121 HVAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT+ P +  LA     + VR+ +A E+     ++ R + V+  D+   + + L+  G  
Sbjct: 181 TATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRALLEHSLQAEGVG 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    R  K L     +  A+ G  +Q +R+ AL+  R GR +V +ATDVAA
Sbjct: 241 RTLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  V++ +L  +PE+ +HR GRTGRAG++G+++
Sbjct: 301 RGIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIAL 340


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 129/350 (36%), Positives = 194/350 (55%), Gaps = 5/350 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L   LLA+  R    + 
Sbjct: 38  LFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTT 97

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APTREL  Q+   L+    K+ + + V +GGVS+++++  L+ G  I+V TPGR
Sbjct: 98  -RTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQLQLEKGTDILVATPGR 156

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PKKR+ ++FSAT+  AI 
Sbjct: 157 LLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIA 216

Query: 195 TLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            LA  Y  D V+V +    +    ++ Y   +   +D+   +   L  +    AIVF  T
Sbjct: 217 DLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFLRT 276

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    + V ++ G  SQ +R  AL+  RDG  +  IATDVAARGID+P +
Sbjct: 277 KHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAV 336

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
             V + +L   P+  +HR GRT RAGR G+++ F  P   +  R  ERL 
Sbjct: 337 SHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLRDIERLM 386


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 201/350 (57%), Gaps = 9/350 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ +AL+  GY   + +Q+A +   L  +D++  AQTG+GKT AF L + + L 
Sbjct: 83  FGFAPELL-DALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAALD 141

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQ 122
            +         P  L + PTRELA+QV    +   A    +  + + G S  R++   L+
Sbjct: 142 GQQ------RTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLK 195

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L+  P +R++
Sbjct: 196 RGVQIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQV 255

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+ P I  ++  Y  D   V I ++    S I  R + V    +  A+  +L   
Sbjct: 256 VLFSATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESE 315

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F  T+A      + L    + V  L+G+++Q +R   ++ +++G   V +ATD
Sbjct: 316 TKEGVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATD 375

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           VAARG+D+  + LV++ ++  + E  +HR GRTGRAGR G ++ FV P+ 
Sbjct: 376 VAARGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRE 425


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 196/365 (53%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++    V   ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +      ++    AP
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIEAYIGFAIPKANAP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/328 (37%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   + P L  +DV+  AQTG+GKT AF L +    L   D  SPA    AL
Sbjct: 22  GFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPI----LERIDTQSPAVQ--AL 75

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV + +    A   + V    GG ++ R+   L  GA ++VGTPGR+ D 
Sbjct: 76  ILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLHKGAQVLVGTPGRVLDL 135

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    LN++ L  +VLDEADEMLD+GF  D++ IL  +P +R+M  FSAT++P +  LA 
Sbjct: 136 LNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQMAFFSATMAPPVYRLAT 195

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +    + +       S I+  A  V     +   +  +L     ++AI+F  TR   
Sbjct: 196 QFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTLQLVLEMEDPESAIIFVRTRKVA 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +  T  L  H + V    G+LSQ +R   LQ  R G+ R  +ATD+AARG+ + DL  VI
Sbjct: 256 AELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVVATDIAARGLHVDDLTHVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  + E+ +HR GRTGRAG+ G++V
Sbjct: 316 NYDLPDSVESYVHRIGRTGRAGKTGIAV 343


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 143/413 (34%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT VQ   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD + + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D +R   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 190/347 (54%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L    
Sbjct: 15  LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA 
Sbjct: 75  AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 132 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241
           AT+   I  LA  + ++  R+ +A      + +  R   VA   +D     +LR      
Sbjct: 192 ATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQR--FVASHGKDYEKRAVLRELVRAQ 249

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+
Sbjct: 250 TELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 356


>gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 534

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 187/326 (57%), Gaps = 6/326 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYV+ T VQE +L   L  +D+ V +QTG+GKT A+  ++   LL   +    ++   AL
Sbjct: 20  GYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAYLTSVIQELLTRGE----SAGKKAL 75

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV  E + L   T +  A   GGV   ++   L+ G  I++GTPGR+ D 
Sbjct: 76  VMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVASLKKGVDIMIGTPGRVIDL 135

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTL 196
             G  +++S +  +V+DEAD M D+GF  D+  ++   P  ++R+ ++FSAT++  +  L
Sbjct: 136 NHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSSEQRQTMLFSATLNSYVKNL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A  Y ++   + IA+EN    +I      V+  D+   ++ I+ +   ++ IVFC+T+ S
Sbjct: 196 AWEYTRNPAEITIAAENITVDEIAQELFHVSSDDKMKLLLGIISHEKPESLIVFCNTKKS 255

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K L  + F+   + G+L Q++R   +   + G  +  +ATDVAARGID+ DL +V
Sbjct: 256 CEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIKCLVATDVAARGIDVNDLAMV 315

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG 342
           I+ +L +  EN +HR GRT RAG+ G
Sbjct: 316 INYDLPNEAENYVHRIGRTARAGKSG 341


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 179/332 (53%), Gaps = 3/332 (0%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL- 76
           RGY   T +Q   +   L+  D+L +AQTG+GKT AF L +   L    D  S    P+ 
Sbjct: 36  RGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHRL--ARDPVSSGPRPVR 93

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA QV   +     +  V   + IGGV +  +   L+NGA IVV TPGRL 
Sbjct: 94  ALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLRNGADIVVATPGRLL 153

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++ + L +  ++ +VLDEAD MLD+GF  DI  I+   P KR+ L+FSAT SP I  L
Sbjct: 154 DHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFSPEIRQL 213

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+      + V +   N     I  R + V    + + +++++  H     ++F  T+  
Sbjct: 214 AEGLLHQPIAVEVTPANATVDSITQRVIRVDQERKRDLLLHLMDAHQWHQVLIFTRTKHG 273

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R  + +    F  +A+ G  SQ  R+ AL   + G  R  +ATD+AARGID+  L  V
Sbjct: 274 ADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALVATDIAARGIDIQRLPRV 333

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ EL    E+ +HR GRTGRAG  G +V ++
Sbjct: 334 VNFELPQVAEDYVHRIGRTGRAGEDGEAVSLV 365


>gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 425

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 140/408 (34%), Positives = 210/408 (51%), Gaps = 21/408 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + G+ + T +Q   L   L   DV+  AQTG+GKT AF + +   L AE     
Sbjct: 15  INRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVLENLEAER---- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTREL +QV  E++ +     V V    GG S+  +   L+ G H++V 
Sbjct: 71  ---VPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGNQIAQLRRGVHVIVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    +++  +  VVLDEADEML++GF DDIE IL   P++R+ ++FSAT+S
Sbjct: 128 TPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLFSATVS 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A+ Y ++   + +  E +    ID         D+   +  IL  +  +  ++F
Sbjct: 188 KPILRIARKYMRNPQVMRV--EKKHSPKIDEFYFKTREEDKVELLDWILSSNNIRMGLIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V R  + L    +    + G+LSQ +R   ++  R G   + +ATDVAARGI +
Sbjct: 246 CNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARGIHV 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           PD+E V++ +L    E  +HR GRTGRAG  G S  ++  +   R  R+       +   
Sbjct: 306 PDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQSFTGKRIKQS 365

Query: 371 PAPSVEAIR---ERDAQRILQ---------DPLFLDSIQGDEKKMVDV 406
             PS E IR   E D + IL+         D   L+S+ G+     D+
Sbjct: 366 NMPSPEEIRRGYEMDLREILRRNLESKTYSDSEILESLAGEGYSFRDI 413


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 195/341 (57%), Gaps = 6/341 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T VQ A +   L  +D++  AQTG+GKT +F L +   L     R   A
Sbjct: 28  QAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  +++ TP
Sbjct: 85  RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P
Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      AI+FC
Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AARG+D+ 
Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            +  V + ++ ++P++ +HR GRTGR G  G ++ FV P +
Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364


>gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
           1656-2]
          Length = 561

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59
           ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA  
Sbjct: 13  SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            T +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ 
Sbjct: 73  DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 132

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  
Sbjct: 133 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
           + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + +
Sbjct: 192 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 251

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++
Sbjct: 252 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 311

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 312 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 194/348 (55%), Gaps = 13/348 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66
           I +AL+ +G  +   +Q   L   L+  D++  A+TG+GKT+ FG+ +    +  +    
Sbjct: 48  IVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMIERCIGPSEPGF 107

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +   AP  LA+ PTRELA QV ++L        + +    GG +   + +DL+ GA 
Sbjct: 108 DALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYEPQIKDLEKGAE 167

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL D ++ + LN+  ++AVVLDEADEMLDLGF +D+E IL ++P  R  ++FS
Sbjct: 168 IIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSATPPTRHTMLFS 227

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNILR 240
           AT+   +  +A+ Y   A  +   + + + + +       YRA  +   ++   +  IL+
Sbjct: 228 ATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHAL---NKIEVLARILQ 284

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+ + +R  + LA   F   AL G+L Q  R  AL+  R G+  V +A
Sbjct: 285 ARGRGLTIIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRHGKIDVLVA 344

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ ++  VI+ +   + +  +HR GRTGRAG  G ++  +
Sbjct: 345 TDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFV 392


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 195/341 (57%), Gaps = 6/341 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T VQ A +   L  +D++  AQTG+GKT +F L +   L     R   A
Sbjct: 28  QAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  +++ TP
Sbjct: 85  RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P
Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      AI+FC
Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AARG+D+ 
Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            +  V + ++ ++P++ +HR GRTGR G  G ++ FV P +
Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPAD 364


>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160358659|sp|A6RW56|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|150848381|gb|EDN23574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 486

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL   D+  P 
Sbjct: 73  EACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALL---DKPQPL 129

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 130 ---FGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATP 186

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   P++RR  +FSATIS 
Sbjct: 187 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATISS 246

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +   KD +RV+I+S   Q  S +    + + L  +D  ++ +L     ++AI+F
Sbjct: 247 KVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIYLLNEFAGQSAIIF 306

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 307 TRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDI 366

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ ++  + +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 367 PSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQ 406


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 200/350 (57%), Gaps = 8/350 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P   V+ + L    ++N T VQE  + P L  +D+L +AQTG+GKT+AF +  
Sbjct: 26  LTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPA 85

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R +       L + PTRELA+QV    E L  K     A+ +GG S   + 
Sbjct: 86  LEML-----RDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +++GA +VV TPGRL D++  + +++S ++ +VLDEAD M+D+GF   I+ IL + P+
Sbjct: 141 QSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPR 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L FSAT+ PA++ + ++   +AVRV I S  +  + ++  A+ V +  + +A+  +
Sbjct: 201 DKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQL 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L Y      +VF  T+    R  K L    F    + G+ SQ +R+ AL     G  +V 
Sbjct: 261 L-YEQEGKTLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARG+D+ D+  VI+ +L   PE+ +HR GRTGRAG  GM+  ++
Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLV 369


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 7/351 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I +A+ E+GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L      +F
Sbjct: 12  ILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGPKRKF 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A   L + PTRELA QV   +E       +   V  GGV V+ + + L+ G  ++V
Sbjct: 72  NQVRA---LVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L+FSAT 
Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK   KD V +++A  N     ++    ++    +   +  +++ +  K  +V
Sbjct: 189 SDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D
Sbjct: 249 FSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++    A+ LF
Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EAKELF 356


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 149/460 (32%), Positives = 227/460 (49%), Gaps = 26/460 (5%)

Query: 4   FENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FEN+   + EA    L   G+ + T +QE  +   L   DVL  +QTG+GKT A+ L + 
Sbjct: 5   FENLG--LSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL + PTRELA QV   L+    +  + +    GG S+ R+ R
Sbjct: 63  EQIDTRNSNVQ------ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ D +  K L +  L+  VLDEADEML +GF DD++ IL  +P  
Sbjct: 117 SLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDA 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238
           R    FSAT+   I  L   + K  V V++       + ID    +V     +  A+  I
Sbjct: 177 RNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   RDG+ ++ 
Sbjct: 237 LEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIKLV 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRR 355
           +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +I    + M R+
Sbjct: 297 VATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMVRQ 356

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            E+  R+   +        VEA R    Q  +++ L  + +      +V  L  ++DP+ 
Sbjct: 357 IEKRLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAGERM-ASFLPLVRELSDEYDPQA 415

Query: 416 IAAGFLRIHRAGLC---------APEEITPVSLVSGRDRF 446
           IAA  L++     C          PE   P  ++  + ++
Sbjct: 416 IAAAALQMIYDQDCPDWMKTDWEVPESTVPKPIIKRKGKY 455


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 202/363 (55%), Gaps = 9/363 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  I +VI +AL+  G+   T +Q   +   L+  D++  AQTG+GKT AFG+ +   
Sbjct: 5   FQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPVLEK 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L    +  P  +   + ++PTRELA+QV  EL  L   T +      GG  + R+ R L
Sbjct: 65  IL----KNEPTQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQLRRL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL DH++   +++S +  +VLDEADEMLD+GF DDI  I+ ++P  R+
Sbjct: 121 RKHPQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPDTRQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA+ +  +   + + ++      I+   +      + + +  +L  
Sbjct: 181 TLLFSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLLDL 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F  T+  V    + L +  +    + G+L+Q +R + ++  R+    + +AT
Sbjct: 241 QEPDLAIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAER 358
           DVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+ G  + FVIP+ M+  R  ER
Sbjct: 301 DVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRAIER 360

Query: 359 LFR 361
           L +
Sbjct: 361 LIK 363


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 197/361 (54%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY ++T +Q+  L   L  KDV+   +TGSGKT AFGL L   L  ++  F   S 
Sbjct: 19  LATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVKS--FKAQS- 75

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              + + PTRELA QV  E+  L  A   + V    GG     +   L++G HIVVGTPG
Sbjct: 76  ---IVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  +  +VLDEAD MLD+GF+D I+ I++  P KR+ L+FSAT    I
Sbjct: 133 RIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++A+   ++   V   S + + +   Y     +  DR  A+  +L  H  ++ ++FC+T
Sbjct: 193 ASIAERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLIFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L  + F  +A+ G+L Q+ER  AL    +    V +ATDVAARG+D+  L
Sbjct: 253 KIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDAL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++V++  ++ +PE  +HR GRTGRAGR G++  +       + + L  + +     +P P
Sbjct: 313 DMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDIDFDRYTDPLP 372

Query: 374 S 374
           S
Sbjct: 373 S 373


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 199/352 (56%), Gaps = 3/352 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+++  A+ E+GY   T +Q   +   L  +D+L +AQTG+GKT AF L +   L    +
Sbjct: 10  PEIL-RAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFAS 68

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SPA  P+ AL ++PTRELA Q+            +   V  GG+++  + ++L+ G 
Sbjct: 69  TSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQELRRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K + ++ +  +VLDEAD MLD+GF +DI  IL   P+ R+ L+F
Sbjct: 129 EILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPRTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +P I  LA+ +  D   V +A +N  ++ ++     V    +   + +++R     
Sbjct: 189 SATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHLIRERQMG 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+ S  +  + L        A+ G+ +Q  R   L   ++G  +V +ATDVAA
Sbjct: 249 QVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           RG+D+ +L  V++ EL + PE+ +HR GRTGRAG  G+++ ++ Q+  ++ E
Sbjct: 309 RGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLE 360


>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
 gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
          Length = 424

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 193/341 (56%), Gaps = 10/341 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KD++  A+TGSGKT AF L +   LL +  R        AL + PT
Sbjct: 19  TKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQRL------FALILTPT 72

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142
           RELA Q+  ++E L +  GV  AV IGG+ +  +   L    HI++GTPGRL DH+   K
Sbjct: 73  RELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHIIIGTPGRLADHLANTK 132

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  LK +V+DEAD +L++ F  +++ IL   PK+RR  +FSAT++  +  L +   +
Sbjct: 133 GFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSATMTKKVKKLQRASVQ 192

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D V++ ++++      +    + V    +D  +V+IL      + +VFC+T  +  R   
Sbjct: 193 DPVKIEVSTKYTTVEKLQQTYIFVPAKYKDCYLVSILNELAGNSFMVFCATCINTQRIGL 252

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  + L G++SQ +R  AL   +   + + +ATDVA+RG+D+P +++VI+ +  
Sbjct: 253 MLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVASRGLDIPHVDIVINFDAP 312

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           S+ ++ +HR GRT RAGR G S+  + Q    + +R E+L 
Sbjct: 313 SHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLI 353


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/378 (36%), Positives = 206/378 (54%), Gaps = 21/378 (5%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   + A            AL + PTRELA QV +EL  L  +     ++ +C GG  V 
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  
Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISH 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232
           SP+ R+ L+FSAT   AI  ++++ Q++ + +    E    SD   I+      A  ++ 
Sbjct: 174 SPQTRQTLLFSATWPQAIAQISQSIQRNPLTI----ETGDVSDLPAIEQTFYEAASREKL 229

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A++ +L      + +VFC+T+         L +       L G+L Q+ER   L    +
Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G  RV +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V FV P  
Sbjct: 290 GSCRVLVATDVAARGLDIKALPMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVSPDE 349

Query: 352 MQRRAERLFREANVSVVW 369
           M  RA  L       +VW
Sbjct: 350 M-IRAHALEDYLQQKLVW 366


>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 429

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 181/332 (54%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY N T +Q   +   L  +D+L  AQTG+GKT AF L L   L A   R +P  
Sbjct: 19  ALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLHRL-AMAPRPAPKG 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L +APTREL  Q+              V    GGVS   +   L+ G  I+V  PG
Sbjct: 78  GARVLVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQFHQVNALKAGVDIIVAAPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I     ++S L+A+VLDEAD+MLD+GF   IE I+ + PK R  ++FSAT+  +I
Sbjct: 138 RLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSI 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA++  +D  +V IA  +     I+   + V  +D+  A++++LR  G   A+VF   
Sbjct: 198 AALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLSMLRTPGIGQAVVFTLQ 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +     + E      AL G  SQ +R  AL   R G A+V +ATD+AARGID+  +
Sbjct: 258 KNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRAGTAQVLVATDIAARGIDVDTV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V + +L S PE+ +HR GRTGRAGR G ++
Sbjct: 318 THVFNHDLPSLPESYVHRIGRTGRAGRNGFAI 349


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 189/347 (54%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L + S L    
Sbjct: 15  LSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPMLSLLEKGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + R L+ GA 
Sbjct: 75  AR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQDRKLERGAD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 132 VLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPFTRQTLFFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----Y 241
           AT+   I  LA  + ++  R+ +A        +  R   VA   +D     +LR      
Sbjct: 192 ATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQR--FVASHGKDYEKRAVLRELVRAQ 249

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KNAIVFC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  ++ +A+
Sbjct: 250 TELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNLQLLVAS 309

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 310 DVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLV 356


>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 467

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 199/366 (54%), Gaps = 9/366 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ E GY++ T +Q   +   L+ KD++ SAQTG+GKT AF L +   L  E+    P  
Sbjct: 47  SIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLRVED---KPKR 103

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + +L + PTRELA QV    +      G+      GGVS+  + + LQ G  I+V TP
Sbjct: 104 LQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKRLQGGVDILVATP 163

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I  K +   +LK +VLDEAD MLD+GF  DI+ +++  PKKR+ +MFSAT S  
Sbjct: 164 GRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKRQNMMFSATFSAP 223

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     D V +  + +N+    I++      ++ + + + ++++ +  K  +VF  
Sbjct: 224 IKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMARKVDLLCHLIKTNEWKQVLVFAR 283

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K+L     +  A+ G  SQ  R+ AL+  ++G  ++ +ATD+AARGID+  
Sbjct: 284 TKHGADKVVKILCHQHIKASAIHGNKSQGARTRALEGFKNGDVKILVATDIAARGIDIHQ 343

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L +  E+ +HR GRTGRAG  G ++ ++        E L  +A    +  P 
Sbjct: 344 LPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAE-----EALLLKAIEKFIGNPL 398

Query: 373 PSVEAI 378
           P V  +
Sbjct: 399 PKVAVV 404


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E LS    V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T+  + 
Sbjct: 10  IEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L+ GA 
Sbjct: 68  KKLN--GTPQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKLEEGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P ++++L+FS
Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A    +  V V ++  N     +      V    +   +  ++     + 
Sbjct: 186 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V
Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAV 344


>gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
 gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
          Length = 475

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59
           ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA  
Sbjct: 9   SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            T +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ 
Sbjct: 69  DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  
Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
           + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + +
Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++
Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 202/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR  DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   A
Sbjct: 131 GRQLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +R+ I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPIRIEIDTVDALPA-IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 848

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 187/339 (55%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA ++ G+ + T +Q   L      KDV+  A+TGSGKT AF L +   LL    R    
Sbjct: 419 EAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQALLENPQRL--- 475

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ +APTRELA Q+   +E L    G+     +GG+ + ++   L    H+V+ TP
Sbjct: 476 ---FAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATP 532

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++   K +VLDEAD ML + F ++I  +L   P++RR  +FSAT++ 
Sbjct: 533 GRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRTFLFSATMTS 592

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   K+  RV +A++      +  + + +    +D  +  +L     ++ IVF 
Sbjct: 593 KVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEFAGQSTIVFV 652

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST  +  R   +L    FQ V L G++ Q +R  AL   + G+  V IATDVA+RG+D+P
Sbjct: 653 STCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVASRGLDIP 712

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++LV++ E+ S+ ++ +HR GRT RAGR G S+  + Q
Sbjct: 713 SVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQ 751


>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 511

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 191/358 (53%), Gaps = 17/358 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++  + +PA
Sbjct: 14  KAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGTK-APA 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QVG  +E       +  AV  GGV +  +   L  G  I+V TP
Sbjct: 72  KQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNRGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + L+ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S  
Sbjct: 132 GRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFSDD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    + V +++   N   + +      V  S +   +V +++ +  +  +VF  
Sbjct: 192 IRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKLIKQNDWQQVLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 252 TKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355
           L  V++ +L + PE+ +HR GRTGRAG  G +V                +I QN++RR
Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIELLIKQNLERR 369


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 132/397 (33%), Positives = 213/397 (53%), Gaps = 24/397 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+   T +Q+  +   L   +++  A TG+GKT A+       LL    R    
Sbjct: 15  KAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAY-------LLPVLQRIQRG 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+QV  E+  L     V      GG ++ R+ R L+ G  ++VGTP
Sbjct: 68  KKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVIVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI  K    + +K V+LDEADEMLD+GF DDIE IL++   +++ L+FSAT+   
Sbjct: 128 GRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAP 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I T+ K +      V +    +    I      +  +++   +V+IL       AIVFC 
Sbjct: 188 IKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L    +    L G++SQ+ER+  ++  + G+  + +ATDVAARG+D+PD
Sbjct: 248 TKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPD 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++  NPE+ +HR GRTGRAGR+G ++ +I           +RE  +    E  
Sbjct: 308 VSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLIN----------YRERKLLKAIE-- 355

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVL 407
              EAI +R  + IL +P+ L+  +  +  KK++D +
Sbjct: 356 ---EAINKRLKREILPEPVDLEEARFKKIAKKILDTI 389


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 10/346 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L  +DV+  AQTG+GKT +F L L + L     R   A 
Sbjct: 15  AIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLLNMLEQGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    E L ++  + VA+ IGGVS   + + L+ GA I++ TPG
Sbjct: 72  MPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKKLERGADILIATPG 131

Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH  RGK L ++ +  +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P 
Sbjct: 132 RLLDHFGRGK-LLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGA--KNAI 248
           I  L   + K+  +V +++      +I  +        +   + +  ++R   +  +NAI
Sbjct: 191 IQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLRELMRSEVSTIQNAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   K L +H F   AL G+L Q++R+  L+  R G      A+DVAARG+
Sbjct: 251 IFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEITYLAASDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
           D+P++  V + ++  +PE+ +HR GRTGRAGR G +  ++ P+ M+
Sbjct: 311 DIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMK 356


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 252/509 (49%), Gaps = 35/509 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   + +Q  ++   L   DV+  AQTG+GKT+AFG  + S + +   + S
Sbjct: 15  ILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVLSRIRSSEGKIS 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 ++ + PTRELA+QV  EL  +   T + +    GG  + R+   L+ G  IVVG
Sbjct: 75  ------SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALRRGIDIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D IR K LN+  +K +VLDEADEML++GF DDIE I+ +S + R+ ++FSAT+ 
Sbjct: 129 TPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQTMLFSATMP 188

Query: 191 PAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  LAK Y K   + + I       + +D     +   DR   +  IL      +AI+
Sbjct: 189 EEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDVDEPTSAII 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+ +V    + L    +    + G+++Q +R N L+  ++G     IATDVAARGID
Sbjct: 249 FCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFLIATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++  VI+ +L  + E+ +HR GRTGRA RKG++  ++        + + +     +  
Sbjct: 309 VENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEKVTKSKIRR 368

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIHR 425
              P+V+ I     + +       ++++ D  K    +  + D E    ++AA  +    
Sbjct: 369 REIPTVDEIFVSKYKNMFSK--IKETLEQDSYKKFIPMATELDEEFNLVEVAAALM---- 422

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                        +V  ++   D +       GS+ ++K      L+VG   K   R L+
Sbjct: 423 ------------DMVYSKEVNYDYTEN---EIGSKTDYK---RLFLNVGRLDKINPRKLV 464

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                ++ + R+ +G I +    +FV V+
Sbjct: 465 DFFNENAKVKREDVGDIDILEKFSFVNVT 493


>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 530

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 144/403 (35%), Positives = 211/403 (52%), Gaps = 55/403 (13%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--- 70
           AL+  GY N T VQ+  +   +  +D+LVS+ TGSGKT AF       +L   +RFS   
Sbjct: 62  ALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAF-------MLPAIERFSQLQ 114

Query: 71  ----------------------PASAPLALAIAPTRELAVQV-------GRELEWLYAKT 101
                                 P + P  L + PTRELA+QV       G+ L+ L   +
Sbjct: 115 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 174

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
                  +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD ML
Sbjct: 175 ------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRML 228

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
           D+GF +DIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I  
Sbjct: 229 DMGFIEDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQ 288

Query: 222 RAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
               V   D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q
Sbjct: 289 TVHYVDDRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQ 348

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR
Sbjct: 349 GARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 408

Query: 341 KGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP---APS 374
            G++V ++    Q   +R ER  R     NV   +EP   APS
Sbjct: 409 SGIAVSLVHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 451


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +A+++ GYV  T++Q   +   L  +DV+  AQTG+GKT AFGL L   + A 
Sbjct: 128 GLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDAR 187

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           +          AL +APTRELA+Q    +  + +++ G+ V    GG     +   L++G
Sbjct: 188 DGEVQ------ALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKSG 241

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I  S P +RR  +
Sbjct: 242 AQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAERRTAL 301

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  D  RV ++ ++     +     +V    +  A+  +L    A
Sbjct: 302 FSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVVPFRHKVGAVSRVLATTEA 361

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +ATDVA
Sbjct: 362 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLVATDVA 421

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V F+ P+     R+ ERL
Sbjct: 422 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 479


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 23/375 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---- 63
           P+++ + L+  GY   T +Q   +   L  +D++  AQTGSGKT AF L +   L     
Sbjct: 20  PELL-QVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHKLTEPLL 78

Query: 64  -------AENDRFSPASAPL-----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
                   E++  S +  P      AL + PTRELA+QV          T +  A+  GG
Sbjct: 79  RLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKSALVYGG 138

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           VS+  + + L  G  I+V TPGRL DH+R   +++S L+ +V DEAD MLD+GF+D+I+ 
Sbjct: 139 VSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGFKDEIDA 198

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+   PK R+ L+FSAT   ++  L+++  +D  R+ +   N    +I+ R   V  SDR
Sbjct: 199 IVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYAVD-SDR 257

Query: 232 DNAIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             A++  L   G  +  ++F   + +  +    L +      A  G+LSQ  R   LQ  
Sbjct: 258 KLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGAREKVLQSF 317

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +DG  RV +ATDVAARGID+ DL  V++ EL    E+ +HR GRTGRAG KG+++ +   
Sbjct: 318 KDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKGVAITL--- 374

Query: 351 NMQRRAERLFREANV 365
            + R  E L  E  V
Sbjct: 375 -LCREDEHLLEEVEV 388


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/343 (37%), Positives = 196/343 (57%), Gaps = 14/343 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDRF 69
           L ++G+  L ++Q   L   L  KDV+  A+TG GKT+AF L +   +     +  N R 
Sbjct: 98  LRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIVEEMAKISPMPANGRR 157

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR-DLQNGAHIV 128
                P+ + +APTRELA QV  + +W+    G   +VC+ G + +RE+   L+ G  +V
Sbjct: 158 VQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFK-SVCVYGGTPYREQEMGLRGGCDVV 216

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+  K L +  LK  VLDEADEML++GF DD+E IL SS    + L+FSAT
Sbjct: 217 IGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKSS-GDVQTLLFSAT 275

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYH--G 243
           + P +  +AK + K D   V++  + +Q +   + +  +    SDR + + +++R    G
Sbjct: 276 LPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDLVCDVIRSKAPG 335

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATD 302
               IVFC T+         L + + +   AL G++SQ +R   L   R+ + +V +ATD
Sbjct: 336 GGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFREDKFQVLVATD 395

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+  +ELVI  E   + E  +HRSGRTGRAG  G+SV
Sbjct: 396 VAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISV 438


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 196/383 (51%), Gaps = 7/383 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-R 68
            I + L+   Y + T +Q   +   L  KD+L  AQTG+GKT AFGL L   +  E   R
Sbjct: 24  TIHQNLAALNYESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLIHKIAQEPKVR 83

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S +    +L + PTRELA QV   L  L   TG+ V V  GG S+  + ++L  GA I+
Sbjct: 84  ESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQTKNLVGGADIL 143

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH   + + +S  + ++LDEAD MLD+GF  D+  IL   PK+R+ +MFSAT
Sbjct: 144 VATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPKERQNMMFSAT 203

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I TLA     + + V +   N     +      V    +   +  ++     +  +
Sbjct: 204 FEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKHELLAYLIGSRNWQQVL 263

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+       K L       V+++G+ SQ  R  AL   + G+ R  IATDVAARG+
Sbjct: 264 VFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAARGL 323

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVS 366
           D+  LE V++ EL    E+ +HR GRTGRAG  G +V ++  + Q   E + R  +  + 
Sbjct: 324 DIQQLEQVVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLLDTRLP 383

Query: 367 VVW----EPAPSVEAIRERDAQR 385
             W    EP+P+ E   +R  +R
Sbjct: 384 QEWLAGFEPSPASEVEPDRAPRR 406


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 199/378 (52%), Gaps = 18/378 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E GY + T +Q   + P L  KDVL  AQTG+GKT +F L + S L     
Sbjct: 11  PKVL-KAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMISLLSKGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    +     + +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQDKLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH+    L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-------VALSDRDNAIVNILR 240
           T++P I  +   +    V+V +A        I    +            D+ N +   + 
Sbjct: 187 TMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDKRNILRATIE 246

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L +H +    + G+L Q  R   L   R+G  R  
Sbjct: 247 AEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNGFREGEIRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRA- 356
            A+DVAARG+D+P++  V + ++  + E+ +HR GRTGRAGR G +  +  P + ++ A 
Sbjct: 307 CASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIATPNDAKQLAA 366

Query: 357 -ERLFREA--NVSVVWEP 371
            E L + A   V   W P
Sbjct: 367 VEELVKMAIPRVENPWSP 384


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 198/345 (57%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ EAL E GY   + +Q A +   +  +D++  AQTG+GKT AF L + + L  E  
Sbjct: 40  PEIL-EALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAAL-DETQ 97

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNGAH 126
           R      P  L + PTRELA+QV    +    K   +  + + G S  R++   L+ G  
Sbjct: 98  R-----TPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKRGVQ 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L   P+KR++++FS
Sbjct: 153 VVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVVLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  ++  Y      + I ++    S I  R + V    +  A+  +L     + 
Sbjct: 213 ATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPMKLEALSRVLEAETKEG 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+A      + L    + V  L+G+++Q +R   ++ +++G   V +ATDVAAR
Sbjct: 273 VIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           G+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 333 GLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPR 377


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 233/458 (50%), Gaps = 17/458 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL +  T+  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPILQTIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKNRKQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVV 368
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +   R  E+L ++    + 
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTQKKMSPL- 366

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRAG 427
             P    +A R +  Q   +    ++   G   +    LL  +    + A FL+ + +  
Sbjct: 367 -RPPTDAQAFRGQLKQAEAEIEDLMNGDLGKYTQEASELLDNYSALDLVAAFLKNLSKDS 425

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                +ITP   +     ++ D R  + G G   N +G
Sbjct: 426 TDVKVKITPEKPLP----YKGDGRHHRGGRGKGRNNRG 459


>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 639

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 35  ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQETF 94

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 95  VPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D +  + L +  ++A+++DEAD MLDLGF +D+E I D +  +R+
Sbjct: 155 K-GAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISDLAGNRRQ 213

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 214 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 273

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 274 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 333

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 334 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 378


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 190/363 (52%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY N T +QE ++ P LR KDV+  AQTG+GKT AF       L+   +R+ P 
Sbjct: 99  DAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAF-------LIPFLNRWRPH 151

Query: 73  S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +   P+ + + PTRELA+Q+  E E L            GG  + R+   L  G  +VVG
Sbjct: 152 TLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDGLTRGCDLVVG 211

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH++   +++S ++  VLDEAD MLD+GFRDDIE IL   P +R+ L+ SAT+ 
Sbjct: 212 TPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSERQTLLMSATVP 271

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  L   Y +D V +++  E      I      V    +   +  ++     +  ++F
Sbjct: 272 DSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVEREKPRQCLIF 331

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +       + L   + +   + G+L Q +R   +   R    +  IATDV +RGID+
Sbjct: 332 VERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIATDVMSRGIDV 391

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ------NMQRRAERLFREA 363
             L  VI+ +L  + EN +HR GRTGR G+ G+++ FV+P+      N++    RL  E 
Sbjct: 392 SGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIEMMINRLIEED 451

Query: 364 NVS 366
            V 
Sbjct: 452 RVE 454


>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 418

 Score =  209 bits (533), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 184/340 (54%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  AL E GY   T +Q   +   L   D+L  AQTG+GKT AF + L   LL+E
Sbjct: 7   NIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLLQ-LLSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + +       AL + PTRELA+Q+G   +     TG+   V  GGV+ + +   L+NG 
Sbjct: 66  RNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAASLRNGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + P+K++ L F
Sbjct: 126 DIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKKQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     +  +V++   +     I  +   V   +++  +V++L+    K
Sbjct: 186 SATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLLKDQSIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L +H     A+ G   Q  R  AL   +    RV +ATD+AA
Sbjct: 246 TALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L  VI+ ++S+  E  +HR GRTGRAG +G ++
Sbjct: 306 RGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAI 345


>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 399

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 141/382 (36%), Positives = 205/382 (53%), Gaps = 17/382 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           AL+E G      +Q A     +  +DVL   +TGSGKT+AFG  +   L+   AE+ +  
Sbjct: 18  ALAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVERLMRLWAESGKSG 77

Query: 71  ----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  AP AL +APTRELA+Q+ R ++ +    G+      GGV   R+   LQ G  
Sbjct: 78  GKRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQGRQVGALQRGVD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D +    L++S +   VLDEAD M D+GF + ++ IL  +    + L+FS
Sbjct: 138 IVIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILRETVDGGQKLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   +  D     +A E++  S ID+R VLV       AI+  L     K 
Sbjct: 198 ATLDSGVAQLVDEFLVDPSVHEVAGEDQDSSAIDHR-VLVVEHREKGAIIEQLADRDGKT 256

Query: 247 AIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            ++F  TRA    F ++LA++L       V+L G+L+Q  R+  L  +  GR  V +ATD
Sbjct: 257 -LIFARTRA----FAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVSVLVATD 311

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI + D++LVI A+     +  LHRSGRTGRAG++G  V +IP+  QRR   L + 
Sbjct: 312 VAARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGKRGTVVTLIPRQRQRRMGELLQR 371

Query: 363 ANVSVVWEPAPSVEAIRERDAQ 384
           A +   + PA   + I    AQ
Sbjct: 372 AEIEADFVPAAPGDGILSAIAQ 393


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 183/335 (54%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + LS+ G+   T +Q+  +   L+ +DVL +AQTG+GKT A+GL L   L  ++   +
Sbjct: 14  LSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQSREET 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL +APTRELA QV   L+     T + +    GG S+  ++  L  G  I++ 
Sbjct: 74  APKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLAKGVDILIA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K  +++ L+ +VLDEAD MLD+GF  DI+ I+   P++R+ L+FSAT  
Sbjct: 134 TPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFSATFE 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA    K+ V V +A+ N     +      V    +   +  ++     +  +VF
Sbjct: 194 TRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAYLIGSRNWQQVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+         L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARG+D+
Sbjct: 254 TKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             LE V++ ++    E+ +HR GRTGRAG+ G++V
Sbjct: 314 AQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAV 348


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L  +D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPLIEKVVNK------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  SGVQSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    V   +       ID    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 202/363 (55%), Gaps = 12/363 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL L   +  +   F     
Sbjct: 18  LNELGYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLGLLHRI--DVSLFQTQ-- 73

Query: 75  PLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TP
Sbjct: 74  --ALVLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGVQRDSLQHAPHIIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT    
Sbjct: 131 GRLLDHLQKRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPET 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  + ++I + +   + I+ +    +  ++ + +  +L  H   + +VFC+
Sbjct: 191 IAAISGRVQQQPMHIDIDTVDALPA-IEQQFFETSAQEKISLLQTLLSQHQPASCVVFCN 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L       +AL G+L Q++R   L    +G AR+ +ATDVAARG+D+  
Sbjct: 250 TKKDCQAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSARILVATDVAARGLDIKS 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LELV++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  L     + + W  
Sbjct: 310 LELVVNYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLN 368

Query: 372 APS 374
           AP+
Sbjct: 369 APA 371


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/345 (37%), Positives = 189/345 (54%), Gaps = 21/345 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL   GY   T VQ A +   L   D+LVSAQTGSGKT AF L     L   +    
Sbjct: 12  ITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSLQKLTERST--G 69

Query: 71  PASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQ 122
               P  L + PTRELA QV       G +L WL         VC +GG S   + R + 
Sbjct: 70  SGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRT-------VCLVGGASFGYQIRAMA 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V TPGRL DH+R   ++ S L+ ++LDEAD MLD+GF +DIE I+ ++P  R+ 
Sbjct: 123 RPVDIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILR 240
           ++FSAT+   +  LA+   +D  R+ IA E    +  ++  +L A  +R  +  + +IL+
Sbjct: 183 VLFSATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEH--LLYADDNRHKERLLDHILK 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   A++F +T+         L++  +    L G++ Q  R+  L  +R GR R+ +A
Sbjct: 241 EAGFDQAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARGID+P +  V++ +L    E+ +HR GRTGRAGR G+++
Sbjct: 301 TDVAARGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAI 345


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score =  209 bits (532), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 130/355 (36%), Positives = 191/355 (53%), Gaps = 5/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL+   R +
Sbjct: 12  ILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGKR-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  I+V 
Sbjct: 70  PAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGKGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      ++   L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     ++     V    +  A++++++ +  K  +VF
Sbjct: 190 DDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQNEWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 250 SRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++      + R  ERL ++
Sbjct: 310 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIERLIKQ 364


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 6/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L  +DVL  AQTG+GKT AF L L   L     R   A
Sbjct: 15  QAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIERLSKGRAR---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA QV    E     T +   + IGGVS+  +   L  G  +++ TP
Sbjct: 72  RMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQVAALNKGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P KR+ L FSAT+ P 
Sbjct: 132 GRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPPKRQTLFFSATMPPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           IT L + + KD  R+  +        I    V +  SD   +  A+  ++     +N IV
Sbjct: 192 ITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAALRELMARADVRNGIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ ++ V    K L +H F    + G+L Q  R+  L   R G  ++ +A+DVAARG+D
Sbjct: 252 FCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGALKILVASDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++S + ++ +HR GRTGRAG+ G +  ++
Sbjct: 312 IPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIV 350


>gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 620

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 195/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQETF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D +  + L +  ++A+++DEAD MLDLGF +D+E I D +  +R+
Sbjct: 132 K-GAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAISDLAGNRRQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 199/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 61  VAQMLEMEARPEPRTV-RGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    +      +A +++   ++ +
Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 240 LAKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDITVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++ F  P  M
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEM 354


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +   +  +N +     
Sbjct: 15  AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   EL  L +   V   V  GG  + R+   L+    I+VGTPG
Sbjct: 72  ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHPQILVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P  R+ L+FSAT+   I
Sbjct: 129 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + KD   V+IAS+      +D   V     ++ +A+  +      + AIVF  T
Sbjct: 189 KKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L    ++   + G+L Q  R   L+  + G  +  +ATDVAARG+D+  +
Sbjct: 249 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
             V + ++  +PE+ +HR GRTGRAG  G+SV FV+
Sbjct: 309 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 344


>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2654]
          Length = 474

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 183/349 (52%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITMLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDQLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY------ 241
           T++  I  +   +  +  RV +A +     +I         S RD A     R       
Sbjct: 187 TMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEKRRLLRALID 246

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  NAI+FC+ +  V    K L ++ +    + G+L Q +R   LQ  RDG  R  
Sbjct: 247 REGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQGFRDGTLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG +V +
Sbjct: 307 VASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMI 355


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 188/339 (55%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L  +GY + T +Q+A     +  +D+L  AQTG+GKT AF L +   +  +        
Sbjct: 66  TLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILERIKQD------TR 119

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELA+QV      +   +  V V    GG     +   L+ G  IVVGTP
Sbjct: 120 APQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINALRRGVQIVVGTP 179

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHIR      + L+ +VLDEADEML +GF DDIE+IL+  P KR+M+ FSAT+   
Sbjct: 180 GRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKRQMIFFSATMPSE 239

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K Y  +   + I ++ ++   I  R +++  S +  A+  +L     +  I+F  
Sbjct: 240 IRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLETTADEGVIIFAR 299

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+A   R ++ L      V  L+G++ Q  R   ++ +R G   + +ATDVAARG+D+  
Sbjct: 300 TKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVATDVAARGLDVER 359

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           + LVI+ ++  + E  +HR GRTGRAGR G ++ FV P+
Sbjct: 360 IGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPR 398


>gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
 gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
          Length = 586

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59
           ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA  
Sbjct: 9   SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            T +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ 
Sbjct: 69  DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  
Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
           + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + +
Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++
Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 411

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 185/330 (56%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GYV  T VQ+  + P L +KDV+VSAQTG+GKT AF L +   L  + D     
Sbjct: 14  KAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPILQQLFDQQDAPKRG 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I+PTRELAVQ+ +  +     T +   V  GG S+  +   L+ G  I+V TP
Sbjct: 74  KKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQIDVLKKGIDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   +N+ H++  VLDEAD ML +GF DD++ I    P+ ++ L+FSATI   
Sbjct: 134 GRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPENKQTLLFSATIPYK 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    KD  R+++        D+      V   ++    ++++R     N ++F  
Sbjct: 194 IEQLASGILKDPERIDVTPTRSVAKDVSQILYYVPKRNKIELCLHLMRNTIKGNVLIFRR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V++  + L ++ + V ++ G+ +Q +R  AL   ++G  +V IATDVAARGID+ +
Sbjct: 254 TKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVKVLIATDVAARGIDIDE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           L+ V + ++ +  E  +HR GRTGRAG  G
Sbjct: 314 LDNVFNFDMPNQAETYVHRIGRTGRAGNIG 343


>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB900]
          Length = 586

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 196/348 (56%), Gaps = 9/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59
           ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA  
Sbjct: 9   SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            T +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ 
Sbjct: 69  DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  
Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
           + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + +
Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++
Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 201/363 (55%), Gaps = 20/363 (5%)

Query: 1   MKIFENIPQVIG---EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  + Q+     + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   + A            AL + PTRELA QV +EL  L  +     ++ +C GG  V 
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLC-GGQPVG 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  
Sbjct: 114 AQRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISH 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRD 232
           SP+ R+ L+FSAT   AI  ++++ Q++ + +    E    SD   I+      A  ++ 
Sbjct: 174 SPQTRQTLLFSATWPQAIAQISQSIQRNPLTI----ETGDVSDLPAIEQTFYEAASREKL 229

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A++ +L      + +VFC+T+         L +       L G+L Q+ER   L    +
Sbjct: 230 TALIGLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFAN 289

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G  RV +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V FV P  
Sbjct: 290 GSCRVLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDE 349

Query: 352 MQR 354
           M R
Sbjct: 350 MIR 352


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 15/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66
           I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ +   ++A +    
Sbjct: 74  IVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 133

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +P + P AL I PTREL  QV ++L          +    GGV+   +   L+ GA
Sbjct: 134 EDLLNP-NKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALERGA 192

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L   P+ R  ++F
Sbjct: 193 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPENRHTMLF 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+   +  LA+ +      +     + Q+  ++      YR   V   ++   +  IL
Sbjct: 253 SATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 309

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++FC T+ + +R  + L    F V +L G+L Q  R  AL+  R+G+  V +
Sbjct: 310 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 369

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 370 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 418


>gi|152013480|sp|A5E1W4|DBP3_LODEL RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 535

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 189/320 (59%), Gaps = 16/320 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L  KDV+  A+TGSGKT AFG+ A+ + + ++N   S       L I+PTRELA+Q+   
Sbjct: 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLS------VLCISPTRELALQIYDN 214

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           LE L   T V      GGVS   + + ++NGA++VV TPGRL D I    +++S +  +V
Sbjct: 215 LEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLV 274

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           LDEAD ML+ GF +DI+ I+ S+P + R+ LMF+AT    +  LA N+    V+V I   
Sbjct: 275 LDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDR 334

Query: 213 NRQHSDIDYRAVLVALSD---RDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVL 264
           +   ++     ++  L D   ++  ++N+L +Y    N     +VF   +   SR   +L
Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             + F+V A+ G+LSQQ+R+ ALQ  + G   + +ATDVAARG+D+P+++ VI+      
Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLT 454

Query: 325 PENLLHRSGRTGRAGRKGMS 344
            E+ +HR GRTGRAG+ G++
Sbjct: 455 IEDYVHRLGRTGRAGQTGIA 474


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 2/347 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G    T +Q   +   L   DVL  AQTG+GKT+AFGL L + L+   
Sbjct: 3   LPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQAP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +   +L +APTRELA Q+   L  L   + + + + +GG S++ + + L+ G  
Sbjct: 63  GKPAPKTI-RSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGTD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I  + + +     +VLDEAD+MLDLGF   +  I      +R+ ++FS
Sbjct: 122 ILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA +Y K   RV ++   +    +      VA + + + ++ +L  H ++ 
Sbjct: 182 ATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELLAKHKSEL 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  K L +  + V A+ G  SQ +R  AL+  RDG  ++ +ATDVAAR
Sbjct: 242 ALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           G+D+PD++ V + EL + P+N +HR GRT RAGR G ++ F  P  M
Sbjct: 302 GLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEM 348


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 191/336 (56%), Gaps = 14/336 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + G+   T VQ   +   L  +D++V ++TGSGKT  FG+++      E     
Sbjct: 14  ILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSILQLTNPE----- 68

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             + P  L + P RELAVQV  ++    ++L  KT  +     G  +++ E + L  G  
Sbjct: 69  -EAGPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIY----GQHNINLETQILNKGVS 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHI    L+  +++ +VLDEAD MLD+GF D +  I+ + PK+R  L+FS
Sbjct: 124 IVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKERITLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  + K Y  + V + I S+ +    I      V  ++++  +  +L     ++
Sbjct: 184 ATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPES 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+T+A+V R    L +  +   AL G++ Q +R N +Q  + G+  + +ATDVAAR
Sbjct: 244 CMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GI + DL LVI+ ++ ++ +N +HR GRTGRAG +G
Sbjct: 304 GIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEG 339


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + + L     R   A
Sbjct: 19  KAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPMLTLLEKGRAR---A 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS   + R L+ GA +++ TP
Sbjct: 76  RMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERGADVLIATP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P 
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHG--AKNAI 248
           IT L K +    V V +   +   + I  + V       D   V   ++   G   KNAI
Sbjct: 196 ITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNEGDELKNAI 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +  + +A+DVAARG+
Sbjct: 256 IFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNKLTLLVASDVAARGL 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+    +   +N  + 
Sbjct: 316 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQKYISAIEEMSNEKIE 375

Query: 369 W 369
           W
Sbjct: 376 W 376


>gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
 gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
          Length = 619

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 16  ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 75

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 76  VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 135

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  + +
Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAVNRGQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 195 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 255 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSIREGRAKILVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359


>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 536

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/396 (35%), Positives = 207/396 (52%), Gaps = 41/396 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63
           AL+  GY N T VQ+  +   +  +D+LVS+ TGSGKT AF L                 
Sbjct: 61  ALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 120

Query: 64  --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                       R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 121 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 174

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF DD
Sbjct: 175 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRMLDMGFIDD 234

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           I+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I      V  
Sbjct: 235 IDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 294

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 295 RDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 354

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 355 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 414

Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP---APS 374
           +    Q   +R ER  R     NV   +EP   APS
Sbjct: 415 VHHAEQGALKRIERFVRTPLPVNVVEGFEPRKSAPS 450


>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 530

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 190/364 (52%), Gaps = 12/364 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT  F L + + L     R   A
Sbjct: 15  KAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMITMLKRGRAR---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTRELA QV    +     T +  A+ IGGVS   +   +  G  +++ TP
Sbjct: 72  RMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQDNLIDRGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P 
Sbjct: 132 GRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFFSATMAPE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-------NILRYHGA- 244
           I  +   +  +  ++ +A        I    ++   S + +  +       +I+   GA 
Sbjct: 192 IERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEKQKLLRDIIASEGAN 251

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V    K + +       + G+L Q  R   L   RDG  R  +A+DV
Sbjct: 252 CRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAKFRDGTLRFLVASDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++ S+ E+ +HR GRTGRAG+ G ++ +     Q+  + + R  
Sbjct: 312 AARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICTPRDQKNLDDIERLV 371

Query: 364 NVSV 367
            ++V
Sbjct: 372 EMAV 375


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 189/338 (55%), Gaps = 8/338 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V  EA+   G+   + +Q   +   L   D++  AQTG+GKT+AFG  + S +  +N 
Sbjct: 13  PKVF-EAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGAPMLSKITPKNK 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S      AL + PTRELA+QV  EL  +     +++    GG  + R+ + L+ G +I
Sbjct: 72  HIS------ALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIERQIKSLKRGINI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+  K L++S+++ + +DEADEMLD+GF +DIE I+ +S   R+ L+FSA
Sbjct: 126 VVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKASNPNRQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T+   +  LA  Y     + + IA               +   DR  ++  IL      +
Sbjct: 186 TMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESLCRILDVDEPSS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G     +ATDVAAR
Sbjct: 246 AIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLDFLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           GID+ ++  VI+ +L  + E+ +HR GRTGRA ++G++
Sbjct: 306 GIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIA 343


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 231/454 (50%), Gaps = 23/454 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E G+ N T +QE  +   L   DVL  +QTG+GKT A+ L +    L + D   P+  
Sbjct: 18  LKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLPI----LEKVDIQDPSVQ 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L + PTRELA QV   L+    +  + +    GG S+ R+ R L+ G  IVVGTPGR
Sbjct: 74  --VLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLERGVQIVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D I  K L +  L+  VLDEADEML +GF DD++ IL  +P+ R    FSAT+   I 
Sbjct: 132 VIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTACFSATMPREIR 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253
            L   + K  V +++       + I+    +V     +  A+  +L     ++AI+F  T
Sbjct: 192 ELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEIEDPESAIIFVRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + + S  T  L E    V    G LSQ +R   +   RDGR ++ +ATD+AARG+D+  L
Sbjct: 252 KQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATDIAARGLDVEGL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSVVWE 370
             VI+ +L  N E  +HR GRTGRAG+ G ++ ++    + M R+ ER  R+  + +   
Sbjct: 312 SHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERKLRQ-KIDICKI 370

Query: 371 PAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           P  S VEA R    Q ++++ L  + +      +V  L  ++D + IAA  L++     C
Sbjct: 371 PNRSEVEAKRLGKLQNLIKESLIGERM-ASFLPLVSELSTEYDSQAIAAAALQMIYDQDC 429

Query: 430 ---------APEEITPVSLVSGRDRFRDDSRAFK 454
                     PE  TP  ++ GR   + +S+  K
Sbjct: 430 PDWMKTDWEVPEAATPKPVI-GRKSNKYNSKNSK 462


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  PAS+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPASSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
 gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
 gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
 gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 736

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 193/358 (53%), Gaps = 20/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 329 AVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 388

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +V+ T
Sbjct: 389 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIAT 448

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 449 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 508

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++   S++ + 
Sbjct: 509 AKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMTKESEKMSR 568

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ S     K L +  F+V  L G  SQ++R  +L   R+ R
Sbjct: 569 LQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGFRNRR 628

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++  F+  +N
Sbjct: 629 FTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTLEN 686


>gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
 gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
          Length = 642

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 198/352 (56%), Gaps = 12/352 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           A+ + G+ N + VQE  + P L E+  D++  AQTG+GKT AFG  L   + AEN     
Sbjct: 16  AIKDLGFENPSEVQEKAI-PVLLEQNTDLVALAQTGTGKTAAFGFPLIQKIDAEN----- 69

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                AL ++PTREL +Q+  E++ LY+K   G+      GG S+  + R+++ GA I+V
Sbjct: 70  -RNTQALILSPTRELCLQITNEIK-LYSKYIKGLHTVAVYGGASITEQAREVKRGAQIIV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+ D I    +NI ++   +LDEADEML++GF +DI  IL  +P ++   +FSAT+
Sbjct: 128 ATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDTPDEKNTWLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  +AK +    V + + S+N   + + +    V   DR  A+  +   +    ++V
Sbjct: 188 PAEVARIAKQFMSSPVEITVGSKNSGSATVSHEYYCVNARDRYEALKRLADANPDIFSVV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+       + L E  +   AL G+LSQ +R   ++  R  + ++ +ATDVAARGID
Sbjct: 248 FCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQMLVATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + ++  V++ +L    E   HRSGRTGRAG+ G S+ +I ++  R+   + R
Sbjct: 308 VDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKISSIER 359


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 4/346 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L +++ + +    P+ AL +APTRELA+Q+    E       +  AV  GGVS + + +
Sbjct: 62  NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK 
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +
Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|319796562|ref|YP_004158202.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315599025|gb|ADU40091.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 483

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 198/336 (58%), Gaps = 9/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++   L++ GY  +T++Q A L P L  KD++  A+TGSGKT AF LAL + L A   
Sbjct: 28  PQMLAN-LTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLANLNAR-- 84

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF    A  A+ + PTRELA QV  E+  L  A+  + V    GGV++  +   L++GAH
Sbjct: 85  RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEHGAH 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DH+    L++S L  +VLDEAD MLD+GF +DI  +    PK+R+ L+FS
Sbjct: 141 IVVGTPGRIMDHLERGNLDLSALNTLVLDEADRMLDMGFFEDIVKVARQCPKERQTLLFS 200

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+ + K   ++ + +++ + S I  R   V  S+R + +  +L +    +
Sbjct: 201 ATYPEGIAKLAQQFMKSPQQITVQAQH-EGSKIRQRWYQVKDSERLHTVSLLLDHFRPVS 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+       +VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 260 TLAFCNTKQQCRDLVEVLQAQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  LE VI+ +++ + E  +HR GRTGR G+ G
Sbjct: 320 GLDISHLEAVINVDVTPDSEIHIHRVGRTGRVGQSG 355


>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
           melanoleuca]
          Length = 739

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 206/361 (57%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 258

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 259 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 318

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT  P +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 319 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 378

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 379 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 436

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 437 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 496

Query: 350 Q 350
           +
Sbjct: 497 R 497


>gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 456

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 11/381 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A ++ G+ + + +Q A +   L+ KDV+  AQTGSGKT AF L +   LL +   F 
Sbjct: 26  LATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQAF- 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+  + E L A  GV  AV +GGV +  +   L    H+VVG
Sbjct: 85  -----FALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGKRPHVVVG 139

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+   KG  +  L+ + LDEAD +L+L F  +I+ IL   P+ RR  +FSAT+
Sbjct: 140 TPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRTQLFSATM 199

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   ++ V+V ++++    + +  + + V    +D     +     A   +V
Sbjct: 200 TSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYLFNELSASTMMV 259

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T     +   V     F  + + G++SQ +R  AL   + G   V +ATDVA+RG+D
Sbjct: 260 FTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRLGALNKFKAGERNVLVATDVASRGLD 319

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P +++VI+ ++  N ++ +HR GRT RAGR G+++ ++ Q      +++ R  N  +  
Sbjct: 320 IPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQKIERLINKKLDA 379

Query: 370 EPAP--SVEAIRER--DAQRI 386
            PAP  +V  + ER  +AQRI
Sbjct: 380 YPAPEEAVLLMHERVNEAQRI 400


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 185/332 (55%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E  +V  T +Q   +   L  +D++  AQTG+GKT AF L +   L+    R  P S
Sbjct: 51  ALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPILDRLVRHPHRPEPKS 110

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTREL+ Q+    E       + V++ IGGV + R+ R L  G  ++V TPG
Sbjct: 111 V-RALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQIRALSRGVDVLVATPG 169

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    + +  ++ +VLDEAD+MLD+GF   I  I+   P KR  L FSAT+  AI
Sbjct: 170 RLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPHKRHSLFFSATMPHAI 229

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +  +D VRV +    +    ++ R +LV  +++   +  +L       A+VF  T
Sbjct: 230 AELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEVLSTEDIDRALVFSRT 289

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  +VLA+      A+ G  SQ +R   L   R+G+ R  IATD+AARGID+  +
Sbjct: 290 KHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTLIATDIAARGIDVTGV 349

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L + PE+ +HR GRT RAGR+G+++
Sbjct: 350 SHVINFDLPNVPESYVHRIGRTARAGREGIAI 381


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KDV+  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
 gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
          Length = 478

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 6/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ L   +  E
Sbjct: 7   NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V  A   G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L  +  +
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +      
Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360

Query: 366 SVVWEPAPSVEAIR 379
            +     PS E ++
Sbjct: 361 EIRKASLPSDEEVK 374


>gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13]
 gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
           13]
          Length = 478

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 6/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V  A   G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   +++ A+   L  +  +
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKEKALWKCLYAYHPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +      
Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360

Query: 366 SVVWEPAPSVEAIR 379
            +     PS E ++
Sbjct: 361 EIKKVSLPSDEEVK 374


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 198/344 (57%), Gaps = 12/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ G    T +Q+  +   +  +DV+  AQTG+GKT AF L +      +N R   A
Sbjct: 16  DKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLPIL-----QNIRVDEA 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   A+ + PTRELA+Q+  E+  L  +   V+AV  GG  V ++   L   AHIV+ TP
Sbjct: 71  SVQ-AVIVTPTRELALQITEEVRKLKTEDMHVLAVY-GGQDVAKQAHKLDGQAHIVIATP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   +++  +K +VLDEAD+ML+ GF  D++ IL  +P+ ++ ++FSATI+  
Sbjct: 129 GRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTPEAKQTMLFSATITTQ 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVF 250
           +  L K   KD  R+ +  +      I  + ++   +DR   + ++ I++ H    A++F
Sbjct: 189 VNQLGKKILKDPRRITVQEKTVTLEGI--KQLVYETTDRAKQDTLIEIMQEHRPFLALIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+    +    L  H F+   L G+LSQ +R   ++  RD + +  +ATDVAARG+D+
Sbjct: 247 CRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQYLVATDVAARGLDV 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             +  V + ++  +PE+ +HR GRTGRAG KG+++ F  P++ Q
Sbjct: 307 EGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQ 350


>gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 582

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 207/372 (55%), Gaps = 19/372 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  +L +  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L + L+ + 
Sbjct: 9   IEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
           + F       AL + PTRELA QV   ++ + + K  +  A+ IGG ++ ++ R L N +
Sbjct: 69  NAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRS 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE IL   PK  + L+F
Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +++ Y  +  R++  S +   + I    + V   ++ + +V+  ++   K
Sbjct: 182 SATLPQNIVRISERYLNEPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD--QFIARK 239

Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +I VF  T+    +  K L E      A+ G+L Q +R   +   R G  R+ IATDVA
Sbjct: 240 GSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361
           ARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++ F+ P  ++M     +L  
Sbjct: 300 ARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKL-- 357

Query: 362 EANVSVVWEPAP 373
              +   ++PAP
Sbjct: 358 ---IDPNFKPAP 366


>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
 gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
          Length = 530

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 189/336 (56%), Gaps = 13/336 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   + VQ   +   L+ KD++  AQTG+GKT AF + + +TL    D     
Sbjct: 58  KGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNTLNRNKD----- 112

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               AL I PTRELA+Q+  E+  L  + G +  +C+ GG S+ R+   L+     ++ T
Sbjct: 113 --IEALIITPTRELAMQISEEILKL-GRFGRIKTICMYGGQSIKRQCDLLEKKPKAMIAT 169

Query: 132 PGRLCDHIRGKGLNISHL--KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           PGRL DH++     I+H   + VVLDE+DEMLD+GF DDIE I    P  R+ L+FSAT+
Sbjct: 170 PGRLLDHLQNG--RIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFSATM 227

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     +   V I   +  + DI+ +  ++   +RD AIV ++       +I+
Sbjct: 228 PEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGERDEAIVRLIETQNPTKSII 287

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +         LA   F+ +AL G++ Q++R  A++  R+ +  + +ATDVA+RG+D
Sbjct: 288 FTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVATDVASRGLD 347

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + D+  V +  +  NPE+ +HR GRTGRAG+KG++V
Sbjct: 348 ISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAV 383


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 200/354 (56%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   +L
Sbjct: 6   FSFAPEIL-RAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPILQKML 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        V V   +GGV +  +   L+ 
Sbjct: 65  -DNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +   KR+ L
Sbjct: 124 GADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT S  +  LA       V+ N+ + ++Q++  D  + ++   ++      +    G
Sbjct: 184 MFSATFSAPVKKLASEMM---VKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 466

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 210/374 (56%), Gaps = 13/374 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q A +   LRE+DV+  AQTGSGKT AF L +  +LL     F       +L
Sbjct: 37  GWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPILQSLLDAPQGFH------SL 90

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  ++E L A  G   A  +GGV +  +   L    H++VGTPGR+ DH
Sbjct: 91  ILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQAIKLGKRPHVIVGTPGRVVDH 150

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +   KG ++  LK +VLDEAD +L+L F ++I+ IL   P  RR  +FSAT++  +  L 
Sbjct: 151 LENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIPSDRRTQLFSATMTNKVAKLQ 210

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +   +D V+V ++++      +    + +    +D     +     A   IVF  T    
Sbjct: 211 RACLRDPVKVEVSAKYSTVESLKQHYLFIPAKHKDCYATYLFNELSASTLIVFART-CDA 269

Query: 258 SRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           +R   ++A +L F  V + G++SQ +R  ALQ  + G   + IATDVA+RG+D+P +++V
Sbjct: 270 TRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNILIATDVASRGLDIPSVDVV 329

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVVWEPA 372
           I+ ++  N ++ +HR GRT RAGR G++V ++ Q    + ++ ERL  ++ +   + E A
Sbjct: 330 INYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLINKKLDKYPLEEEA 389

Query: 373 PSVEAIRERDAQRI 386
             +   R  +AQRI
Sbjct: 390 VMLLYDRVNEAQRI 403


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/332 (37%), Positives = 189/332 (56%), Gaps = 7/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLRVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L  A   + V    GG+    +   L++GAHI+VGTPG
Sbjct: 75  --TLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +HIR   L +  L  +VLDEAD ML++GF+D ++ I++ +P+ R+ L+FSAT    I
Sbjct: 133 RVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTLLFSATYPDQI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++AK   ++ V+V + S +   S   +   +    +R  A+  +L  H  ++ +VFC+T
Sbjct: 193 ASIAKRIMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAVRLLLSQHRPESCVVFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      +  L  + F  +AL G+L Q+ER   L +  +    + +ATDVAARG+D+ +L
Sbjct: 253 KREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVATDVAARGLDIDNL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + VI+  L+ + E  +HR GRTGRAG KG++ 
Sbjct: 313 DAVINYHLARDTEVHVHRIGRTGRAGSKGIAC 344


>gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 437

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 201/377 (53%), Gaps = 15/377 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY   T +QE  +   L+  D+L  AQTG+GKT AF L +   L   ++R      P A
Sbjct: 19  QGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPILHLLSTADNRG--GHRPRA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA QVG  +E       +   V  GGV ++ +++ L+ G  IVVGTPGRL D
Sbjct: 77  LVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQKLRKGVDIVVGTPGRLLD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
               K L++S ++ ++LDEAD MLD+GF  DI+ I+   P+KR+ L FSAT S  I  L+
Sbjct: 137 LAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKRQTLFFSATYSKDIKALS 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  ++   V +A +N     +D     V  + + N + +++R       +VF  T+   
Sbjct: 197 ESILRNPSLVEVARQNTSAETVDQSVYHVGKNKKRNLLSSLIRDGEWNQVLVFTRTKHGA 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           ++ T +L        A+ G  SQ  R+ AL   +  + RV +ATD+AARGID+  L  V+
Sbjct: 257 NKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVLVATDIAARGIDIDRLPHVV 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF-------REANVSV--- 367
           + EL    E+ +HR GRTGRAG  G ++ ++    +  A  LF       ++ NV     
Sbjct: 317 NYELPEIAEDYVHRIGRTGRAGCSGEAISLV---AKEEASLLFAIEKLINKKVNVKEIPG 373

Query: 368 VWEPAPSVEAIRERDAQ 384
           + E APS    RE + +
Sbjct: 374 ITEKAPSQSQAREAEKE 390


>gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 615

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  + +
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster
           bacterium]
          Length = 440

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 195/357 (54%), Gaps = 7/357 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY ++T +Q+  L   L  KDV+   +TGSGKT AFGL L   L  ++  F   S    +
Sbjct: 2   GYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVKS--FKAQS----I 55

Query: 79  AIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  E+  L  A   + V    GG     +   L++G HIVVGTPGR+ +
Sbjct: 56  VLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPGRIEE 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R   L +  +  +VLDEAD MLD+GF+D I+ I++  P KR+ L+FSAT    I ++A
Sbjct: 116 HLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASIA 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +   ++   V   S + + +   Y     +  DR  A+  +L  H  ++ ++FC+T+   
Sbjct: 176 ERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLIFCNTKIDT 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L  + F  +A+ G+L Q+ER  AL    +    V +ATDVAARG+D+  L++V+
Sbjct: 236 QDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMVV 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           +  ++ +PE  +HR GRTGRAGR G++  +       + + L  + +     +P PS
Sbjct: 296 NFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDIDFDRYTDPLPS 352


>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
 gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
          Length = 615

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  + +
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 192/341 (56%), Gaps = 9/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L++KDVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 51  KAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 107

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS   + R L+ GA +++ TP
Sbjct: 108 RIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLERGADVLIATP 167

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH  RGK L +  ++ +V+DEAD ML++GF  D+E I   +P  R+ L FSAT++P
Sbjct: 168 GRLLDHFERGKLLLVG-VEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAP 226

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHG--AKNA 247
            IT L K +    V + I   +     I  R V       D+   +  +++  G   KNA
Sbjct: 227 EITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLKELIQNEGDELKNA 286

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  +S   + L +H F V  L G++ Q  R+N L   ++ +  + IA+DVAARG
Sbjct: 287 IIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARG 346

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++
Sbjct: 347 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIV 387


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 194/346 (56%), Gaps = 4/346 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L +++ + +    P+ AL +APTRELA+Q+    E       +  AV  GGVS + + +
Sbjct: 62  NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK 
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +
Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 198/340 (58%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+++GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L  +    SP 
Sbjct: 61  KTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLERLQGD----SPL 116

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV    +   A    + V    GG     +   L+ G  +VVGT
Sbjct: 117 --PSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRRGVDVVVGT 174

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   LN S L+++VLDEADEML +GF DD+E+IL+  P++R++++FSAT+  
Sbjct: 175 PGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPN 234

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y ++   + I +++++   I +R + +  S +  A+  +L     +  I+F 
Sbjct: 235 EIRRLSKRYLREPAEITIKTKDKEARRIRHRCITMQNSHKLEALNRVLEAVTGEGVIIFA 294

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L      V  L+G++ Q +R   ++ +R G   + +ATDVAARG+D+ 
Sbjct: 295 RTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVD 354

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            + LVI+ ++  + E  +HR GRTGRAGR G ++ F+ P+
Sbjct: 355 RIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPR 394


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 190/341 (55%), Gaps = 2/341 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL   GY   T +Q+  +   L  KD+L  AQTG+GKT AF + +   LL +
Sbjct: 7   NLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPILQ-LLYQ 65

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   S     L AL + PTRELA+Q+           G+  AV  GGV+  ++   ++ G
Sbjct: 66  DKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVEAIRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D +  + L++ H+   VLDEAD MLD+GF  D++ I+   P++R+ L 
Sbjct: 126 LDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQRRQSLF 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  LA     + V+V ++  +     ++     V   D+ N ++ +LR    
Sbjct: 186 FSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLLRSPNV 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+A+VF  T+    +  + + +   +  A+ G  SQ  R +AL   ++G+ RV +ATD+A
Sbjct: 246 KSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRVLVATDIA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ +L  VI+ +L + PE  +HR GRTGRAG  G+++
Sbjct: 306 ARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIAL 346


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 5/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++ +GY   T +Q   +   L  KDV+ +AQTG+GKT  F L L   LL+  +R +
Sbjct: 25  ILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSRGNR-A 82

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   ++       +  AV  GGV +  +   L  G  I+V 
Sbjct: 83  QAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKLGKGVDILVA 142

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +N + L+ +VLDEAD MLD+GF  DI+ IL + P KR+ LMFSAT S
Sbjct: 143 TPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQNLMFSATFS 202

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     ++    +V    +  A++++++ +  +  +VF
Sbjct: 203 DDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWQQVLVF 262

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 263 SRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVLVATDIAARGIDI 322

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFRE 362
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +   + R  ERL ++
Sbjct: 323 DQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIERLIKK 377


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 195/361 (54%), Gaps = 10/361 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 15  AVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    E       + VA+ IGGVS   + + L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDRGTDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 132 RLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAK---NAI 248
             L + + ++  RV +A  +    +I +   L A   +D     +LR    GA+   NAI
Sbjct: 192 QRLTETFLQNPARVEVARTSSTSENISH--YLRAAEGKDYEKRAVLRELLEGAEDLNNAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  +S   + L  H + V +L G++ Q+ R   L   + G  ++ IA+DVAARG+
Sbjct: 250 VFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLIASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P++  V + ++ S+ E+ +HR GRTGRAGR G++  ++  + Q+  E + +     + 
Sbjct: 310 DIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESIEKLIAQDIE 369

Query: 369 W 369
           W
Sbjct: 370 W 370


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      I+   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 193/346 (55%), Gaps = 4/346 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L   D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L ++  + +    P+ AL +APTRELA+Q+G   E       +  AV  GGVS + + +
Sbjct: 62  NL-SKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK 
Sbjct: 121 ALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKV 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTITQEVYHVRKKQKRALLKHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +
Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 474

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 214/401 (53%), Gaps = 28/401 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I +AL++ GY   T VQ+  + P +  +D++VS+QTGSGKT AF L AL    L E    
Sbjct: 12  ILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPALHRFALQERPAA 71

Query: 70  SP-------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109
            P                   A+ P  L + PTRELA+QV    E    +   V AV I 
Sbjct: 72  VPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGRQLHHVRAVAIL 131

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG+   ++   L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+GF +DI
Sbjct: 132 GGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEADRMLDMGFIEDI 191

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-AL 228
           E I+ ++P  R+ L+FSAT+   +  LA+   + A+R+ + + + +H +I+ R   V  L
Sbjct: 192 ERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDNIEQRMHFVDDL 251

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + ++  + ++LR      A+VF +T+      +  L        AL G++ Q  R+  L 
Sbjct: 252 AHKNRLLDHLLRDATIDQALVFTATKRDADTVSDRLNVAGLNAAALHGDMHQGARNRTLA 311

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            MR G+ R+ +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G+++ ++
Sbjct: 312 AMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIGRTGRAGRNGLAISLV 371

Query: 349 PQNMQ---RRAERLFREA---NVSVVWEPAPSVEAIRERDA 383
                   R+ ER  ++     + +  EP     A++ R A
Sbjct: 372 HHAEHFNVRKIERFTKQPIPVEIVIGHEPTRRPIAVKPRPA 412


>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
 gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
          Length = 414

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 188/340 (55%), Gaps = 6/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+SE GY   TS+Q   +   L   D+L SAQTG+GKT +F L +    L +  + +
Sbjct: 12  LNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPI----LQKAGQQT 67

Query: 71  PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           PAS      L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+
Sbjct: 68  PASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  + + +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   +L +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVLGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 468

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L + 
Sbjct: 13  FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L      F    A   L + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L---KISFFVVQA---LVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLDS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+R
Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT    I  L+K + KD   V++ +   +  DI+     V+   +   ++ ++L
Sbjct: 187 QTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEE-IDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 257/527 (48%), Gaps = 28/527 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  +L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L L   L  EN++
Sbjct: 59  KLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL--ENNK 116

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            S A     L + PTRELA QV    +   A++  +  + I GG     +   L+    I
Sbjct: 117 ESNAKV---LVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKRKTDI 173

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I+++  +VLDEADEML +GF +DIE+I+D  P+ ++M++FSA
Sbjct: 174 VVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLFSA 233

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  +   + I S  ++   I  + + V    + +A+  IL     +  
Sbjct: 234 TMPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYINVQRHHKLDALKRILEITN-EGV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 293 IIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAARG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  ++LVI+ +   + E   HR GRTGRAGR G ++  + Q  +     L       +
Sbjct: 353 LDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRNKI 412

Query: 368 VWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK----I 416
                P+ + I E+   +++   +   LD    +EKK     ++D L  KH  E     +
Sbjct: 413 EEIEIPNNKIINEKRMGKLITNLNESSLDQENNEEKKALMIDILDTLREKHSMEDSNIAM 472

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD-------RFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L I        E+ + +   +  D                +      D+F+    +
Sbjct: 473 AAINLAIGNKSFFINEDESWLYRQNNSDRNRSNRNGNNRMRNTNRRNNYQNDSFET---Y 529

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
             + G   +     ++  +C S+ IN + IG I++  + + V++  D
Sbjct: 530 KFNFGKMDRVRVANIISSICTSTNINGRLIGKIQIFNEYSLVDLPRD 576


>gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 606

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 12  ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 71

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  + +
Sbjct: 132 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 355


>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
          Length = 710

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 206/361 (57%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 229

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 230 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 289

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT  P +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 290 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 349

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 350 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 407

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 408 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 467

Query: 350 Q 350
           +
Sbjct: 468 R 468


>gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
 gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 222/418 (53%), Gaps = 10/418 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I  ++ + G+V  + +Q A +   L+ +D++  A TG+GKT AFGL   + +   N
Sbjct: 25  LSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPALNNIDVRN 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L I PTRELA QV  EL               GG S +R+   +  GA 
Sbjct: 85  -------GVEILVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDLIDRGAS 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKA-VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VV TPGRL D ++ KGL  +   + VVLDEADEMLD+GF DDI  I    P KR+ L+F
Sbjct: 138 VVVATPGRLLDILK-KGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKRQTLLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+    +   ++I      +SDI+    ++  S+RD+AI+ ++     K
Sbjct: 197 SATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVIEESERDDAIIRLMDSEDTK 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC T++ V R + VL+   +    L G++ Q++R   ++  +    +V +ATDVAA
Sbjct: 257 KSVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + ++  V +  +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+ ++   
Sbjct: 317 RGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKQKVGT 376

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           S+     PS   +RE   + +++  +    I  +  K++D L    D E++A   + +
Sbjct: 377 SMGHAYVPSKNDLRESTVEALVK-KVEDHKIYDEAHKVLDRLREDIDEEQMAYKLISM 433


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 189/335 (56%), Gaps = 9/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G    T +Q  ++   +  +DV+  A+TGSGKT+AF L +   +  E        
Sbjct: 16  ALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPMLEKVDLEK------I 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN-GAHIVVG 130
           A   L +APTRELA+QV  EL+ L       V V    GG  V ++   L+    HIVV 
Sbjct: 70  AVQGLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEKQLHKLETRNIHIVVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+R   +++S L  ++LDEAD+ML +GF  ++E I++++P  R+  +FSATIS
Sbjct: 130 TPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEATPPTRQTALFSATIS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             + TLAK YQ+    V +  + R   +I+   V      +  A+V +++       I+F
Sbjct: 190 KDVRTLAKRYQQQPYTVQVKDKERLVEEIEQFVVETTDRKKLQALVEVIKETQPFMGIIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T   VS+    L    F V  L G+LSQ +R N ++  RD + ++ IATDVAARG+D+
Sbjct: 250 CRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKIQLLIATDVAARGLDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +  V + ++  + E+ +HR GRTGRAG  GM++
Sbjct: 310 EGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAI 344


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 201/354 (56%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 15  FSFAPEIL-RAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 73

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        V V    GGV V  + + L+ 
Sbjct: 74  -DNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQKLKR 132

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL +H++   LN+S+++ +VLDEAD MLD+GF  DI+ I+ +  K+R+ L
Sbjct: 133 GTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNL 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S N Q+S  D  + +V   ++      +    G
Sbjct: 193 LFSATFSSAVKKLANDM---LVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSELIG 249

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    ++F +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +A
Sbjct: 250 KKNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRALVA 309

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R
Sbjct: 310 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 363


>gi|332760197|gb|EGJ90493.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671]
          Length = 435

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 201/369 (54%), Gaps = 14/369 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL
Sbjct: 2   GYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL 
Sbjct: 56  VLCPTRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E     ++L G+L Q  R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKSLELV 291

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           ++ EL+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+ 
Sbjct: 292 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPAN 350

Query: 376 EAIRERDAQ 384
            +I   +A+
Sbjct: 351 SSIVTLEAE 359


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      I+   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 458

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/413 (32%), Positives = 216/413 (52%), Gaps = 24/413 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+  +T++Q+  L   L  KDV+   +TGSGKTV F L + + L  E  R     
Sbjct: 17  TLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNNLNVERFRIQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               L + PTRELA QV +E+  L   +  V V    GG+ +  +   L++GAHI+VGTP
Sbjct: 74  ---TLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEHGAHIIVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    +  S +   VLDEAD MLD+GF D I+ ++   P  R+ L+FSAT    
Sbjct: 131 GRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQTLLFSATYPKH 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    +A  +   + + + +   +   +     +D+A+  +L ++  ++++VFC+
Sbjct: 191 IEVLAEKVTSEAQMIKTQTHDEKTTIKQFFYEVDGTEAKDDALETLLLHYKPESSVVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +  L    F V  L G++ Q+ER  AL    +    + +ATDVAARG+D+ +
Sbjct: 251 TKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVATDVAARGLDVDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ V + ELS +PE  +HR GRTGRAG +G++          R  R+          E  
Sbjct: 311 LDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARI----------EEY 360

Query: 373 PSVEAIRERDAQRILQDPLF--LDSIQ--GDEKKMV---DVLLAKHDPEKIAA 418
             +E +  +  Q++++ P +  + +IQ  G +K+ V   D+L A      IAA
Sbjct: 361 MDIECLPSQLPQKLIERPFYPKMATIQILGGKKQKVRAGDILGALTKQANIAA 413


>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160358660|sp|A7EML8|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 482

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +  +LL   D+  P 
Sbjct: 69  EACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLL---DKPQPL 125

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 126 ---FGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATP 182

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   P++RR  +FSATIS 
Sbjct: 183 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATISS 242

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +   KD +RV+I+S   Q  S +    + + L  +D  ++ +L     ++AI+F
Sbjct: 243 KVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHKDTYLIYLLNEFAGQSAIIF 302

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 303 TRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVAARGLDI 362

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ ++  + +  +HR GRT RAG+ G ++  + Q
Sbjct: 363 PSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQ 402


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 197/354 (55%), Gaps = 12/354 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +  A++E G+   T +QE  +   L  +D++  AQTG+GKT AFGL +    LA 
Sbjct: 11  NLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPM----LAH 66

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
            D   P  +A  A+ +APTRELA+Q    +E   A    V  V + GG S   + + L++
Sbjct: 67  ID---PGFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQIKGLKS 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181
           GA +VVGTPGR+ D I    L ++++  +VLDEADEML +GF +D+E I  S P+  KR 
Sbjct: 124 GAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMPESGKRI 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+   I  +A  +  D VR+ +A ++    +I     +V    +  A+  +L  
Sbjct: 184 TALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGALGRVLAT 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF  TR         +A   F   A+SG++SQ ER   +  +RDG   V +AT
Sbjct: 244 RDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSLDVLVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           DVAARG+D+  + LVI+ ++    E  +HR GRTGRAGR G S+ F  P+   R
Sbjct: 304 DVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFR 357


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 195/348 (56%), Gaps = 13/348 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ I +AL   G V    +QE  L   L  +D++  A+TG+GKT AFG+    TL    
Sbjct: 16  IPE-IADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGI---PTLQLIG 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L +APTRELA+QV  +L     K G  +    GG +   +   L+NG  
Sbjct: 72  KPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQIEALKNGVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D +  K L++S +  +VLDEAD MLDLGF  DIE I+   P+KR+ ++FS
Sbjct: 132 VVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPEKRQTMLFS 191

Query: 187 ATISPAITTLAKNY--QKDAVRVNIA---SENR-QHSDIDYRAVLVALSDRDNAIVNILR 240
           AT+   I  L++ Y  +   +R  IA   +E + + +   YR   +   D+   +  +L+
Sbjct: 192 ATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRM---DKIEILARVLQ 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VFC T+ +       L +  F V A+ G+LSQ +R  AL+  R+G+  V +A
Sbjct: 249 STELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKINVLVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ D+  VI+ +L  + +  +HR GRTGRAGR G+++  +
Sbjct: 309 TDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFV 356


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 199/367 (54%), Gaps = 11/367 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSP 71
           ++ E GY++ T +Q   +   L+ KD++ SAQTG+GKT AF L +   L AE+   R+  
Sbjct: 38  SIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIELLRAEDKPKRYQV 97

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            S    L + PTRELA QV    +       +      GGVS+  + + LQ G  I+V T
Sbjct: 98  HS----LVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKRLQGGVDILVAT 153

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I  K +   +LK +VLDEAD MLD+GF  DI+ +++  PK R+ +MFSAT S 
Sbjct: 154 PGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNRQNMMFSATFST 213

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     D V +  + +N+    I++      ++ + + + ++++ +  K  +VF 
Sbjct: 214 PIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIKTNKWKQVLVFA 273

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  K+L     +  A+ G  SQ  R+ AL+  ++G  ++ +ATD+AARGID+ 
Sbjct: 274 RTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVATDIAARGIDIH 333

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L  VI+ +L +  E+ +HR GRTGRAG  G ++ ++        E L  +A    +  P
Sbjct: 334 QLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAE-----EALLLKAIEKFIGNP 388

Query: 372 APSVEAI 378
            P V+ +
Sbjct: 389 LPKVDVV 395


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 187/341 (54%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N       
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 74  ---VVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +    +K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+  AI
Sbjct: 131 RLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 RELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + +L  +PE+  HR GRTGRAG+ G +  FVIP+ ++
Sbjct: 311 SHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIE 351


>gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
 gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
          Length = 619

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 194/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALASTL 62
           + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA   T 
Sbjct: 16  ETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQDTF 75

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 76  VPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 135

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  + +
Sbjct: 136 K-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAANRGQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + + L 
Sbjct: 195 TLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTHWLA 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 255 DETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 315 TDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAI 359


>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 435

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 196/337 (58%), Gaps = 8/337 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL E  +   T VQ+  +  +L  KDV+V ++TGSGKT AF + + +++  +
Sbjct: 6   NLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILNSI-EK 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+R        A+ I PTRELA+QV   +  +     +      GG S++ + R+++NGA
Sbjct: 65  NER------QAAMIITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIREIRNGA 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I++GTPGRL D ++ + LN   ++ +VLDE D MLD+GF DDI++IL   PKKR+ + F
Sbjct: 119 NIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKRQTMFF 178

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  +  NY  + + VNI +     + I +   + + SD+   ++  L     +
Sbjct: 179 SATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLNEKKPE 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T+ +  +   ++     Q V + G LSQ  R ++L M ++G   + IAT+VAA
Sbjct: 239 KAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQNRREHSLNMFKEG-VNMLIATNVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RG+D+ ++  +I+ +  ++P+  +HR GR+ R G+ G
Sbjct: 298 RGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSG 334


>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
          Length = 433

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 197/348 (56%), Gaps = 10/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E+E  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQMRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P+ ++ ++
Sbjct: 122 THIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y K+   + I S     ++I    +      + +A+ +++     
Sbjct: 182 FSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIETTDRTKQDALRHVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + +  IATDVA
Sbjct: 242 FLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++ FV P++
Sbjct: 302 ARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKD 349


>gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 484

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 204/369 (55%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ EA+ +  +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 79  VPELL-EAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 137

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +        L +AP RELA Q+    + L +  GV     +GG+ +  + RDL    H
Sbjct: 138 TPY------FGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPH 191

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGR+ DH+   KG ++  LK  V+DEAD++LDL F   ++ IL   P KR   +F
Sbjct: 192 IIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLF 251

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + VRV ++S+ +   ++    +LV+   ++  ++++L     K
Sbjct: 252 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGK 311

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + I+F  TRA   R T +L   L F  V L G+L+Q +R  +L   + G A + IATDVA
Sbjct: 312 SIIIFARTRAHTQR-TSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       R+ +   
Sbjct: 371 ARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQ 430

Query: 365 VSVVWEPAP 373
             +  +P+P
Sbjct: 431 KKLPKDPSP 439


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 207/383 (54%), Gaps = 12/383 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A++E G+   + VQ+  +   L   D++  AQTG+GKT AFGL + S + A+
Sbjct: 7   NLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIMSMMKAD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   +   L I PTRELA+QV  EL      +G+  A   GG +  ++   ++  A
Sbjct: 67  -------GSVEGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIERIKQ-A 118

Query: 126 HIVVGTPGRLCDHIRGKGLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL D +    + ++ H   VVLDEADEMLD+GF D+I+ I    PK+R+ LM
Sbjct: 119 SIVVATPGRLQDLLMSGKIKLNPHF--VVLDEADEMLDMGFLDEIKNIFTFLPKERQTLM 176

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+    +   V+I      +S I     +V   +RD+A+V ++ Y   
Sbjct: 177 FSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYVVQERERDDALVRLIDYKNP 236

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC  +  V R    L    F+V  L G++ Q++R   ++  + G   + +ATDVA
Sbjct: 237 EKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFVATDVA 296

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V +  +  + E+ +HR GRTGRAG+ G ++ ++  N  R  +R+ ++  
Sbjct: 297 ARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRIEKDVG 356

Query: 365 VSVVWEPAPS-VEAIRERDAQRI 386
             +  +  P+ +E    R+ + I
Sbjct: 357 TKMTTQVIPTRIEVQNNRNDELI 379


>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 376

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 193/352 (54%), Gaps = 13/352 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70
           AL+  G    +++Q A++ P +  +DV   A TGSGKTVAF   + S L+A   +N R  
Sbjct: 20  ALARMGLQAPSAIQGAVIPPVMAGRDVEARAGTGSGKTVAFAAPIVSMLMARETDNSRVR 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L +APTRELA Q+   L  L    G+ V    GG +   + R L +G  IVVG
Sbjct: 80  ------CLVLAPTRELAGQIAGVLRGLARGGGLRVMQATGGTARVAQARTLADGTAIVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D + G  L++S +   VLDEAD MLD GF +++  +  + P + + L+FSAT+ 
Sbjct: 134 TPGRVTDLVHGGELDLSAVGIFVLDEADRMLDPGFAEEMLALAAALPPRHQTLLFSATLP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PA+  LA        RV++A E+     I   A+ V +  +  A +  LR +G +  +VF
Sbjct: 194 PAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFVPMRHKTQATLACLRQYGTQRVMVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR       + ++  L   +A+ G+ SQ  R   L+  R GR  V +ATDV ARGID+
Sbjct: 254 VRTRQEADGVARAISA-LVPAIAIHGDHSQARRERMLRDFRQGRVGVLVATDVMARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
            D+ LVI+ ++   PE+ +HR GRT RAGR+G++V    P+  Q  R  ERL
Sbjct: 313 DDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIERL 364


>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
 gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
          Length = 448

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 192/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +  TLL   
Sbjct: 26  VTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 86  QRL------YALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 IVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V IL      
Sbjct: 200 SATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++ Q +R  AL   +     + +ATDVA+
Sbjct: 260 SFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLATDVAS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQ 364


>gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 582

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 206/372 (55%), Gaps = 19/372 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  +L +  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L + L+ + 
Sbjct: 9   IEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPLINKLILDK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
           + F       AL + PTRELA QV   ++ + + K  +  A+ IGG ++ ++ R L N +
Sbjct: 69  NAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQLRQLGNRS 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE IL   PK  + L+F
Sbjct: 122 RIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVPKDHQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +++ Y     R++  S +   + I    + V   ++ + +V+  ++   K
Sbjct: 182 SATLPQNIVRISERYLNKPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD--QFIARK 239

Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +I VF  T+    +  K L E      A+ G+L Q +R   +   R G  R+ IATDVA
Sbjct: 240 GSILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRILIATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFR 361
           ARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++ F+ P  ++M     +L  
Sbjct: 300 ARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWNEISKL-- 357

Query: 362 EANVSVVWEPAP 373
              +   ++PAP
Sbjct: 358 ---IDPNFKPAP 366


>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 417

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 11/375 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   T +Q+  +   L +KD+L  AQTG+GKT  F L L   LL+      
Sbjct: 16  ILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLLE-LLSREKPTK 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QVG  +            V  GGV ++ +  +L+ G  IV+ 
Sbjct: 75  QKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQISNLRKGTDIVIA 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI  K +++  ++ ++LDEAD MLD+GF +DI+ IL+  P +R+ L+FSAT S
Sbjct: 135 TPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNIIPNQRQTLLFSATYS 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIV 249
            AI  L+  +      + +A  N   S+I  +AV      R   ++  L   G  +  +V
Sbjct: 195 DAIKKLSNQFLNAPKLIEVARANTS-SEIVKQAVYHVDKTRKRELLTHLINEGKWQQVLV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R +  L       VA+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 254 FTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDVRVLVATDIAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVS 366
           +  L  VI+ EL +  E+ +HR GRTGRAG  G ++ ++        +  E+L ++ ++ 
Sbjct: 314 IDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEFLQNIEKLIKK-DIP 372

Query: 367 VVW----EPAPSVEA 377
            VW    +P PS++A
Sbjct: 373 KVWLKGFKPDPSIKA 387


>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
          Length = 485

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 199/345 (57%), Gaps = 10/345 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            + +A+   G+ + +S+Q  +L   L+E   KD++  A+TGSGKT AF + +   L+   
Sbjct: 62  TLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAIPIIQRLIDNP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  G+  AV +GG+ + ++   L    H
Sbjct: 122 QRM------YALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQQALALARKPH 175

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGRL DH+   KG +++ +K +VLDEAD  L + F + I+ IL   PK+R   +F
Sbjct: 176 VVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSCFPKERVTYLF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   +D V++ ++S+ +  S +  + + +    ++  +  I+     K
Sbjct: 236 SATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKYKECYLAFIMNEFRGK 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F ST +S    T  L    F+ V ++G LSQ +R  AL   ++G   + IATDVA+
Sbjct: 296 STILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGARNILIATDVAS 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P+++LV++ ++  N ++ +HR GRT RAG+ G ++  + Q
Sbjct: 356 RGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQ 400


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 9/351 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ E GY   T +Q   +   ++ +DV   AQTG+GKT AF L +   L     
Sbjct: 10  PRVLS-AVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMIHKL---GQ 65

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P  L + PTRELA QV    E       + +A+ IGGVS   + + L  G  +
Sbjct: 66  GRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKKLTAGVDV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P +R+ L+FSA
Sbjct: 126 LIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRRQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--- 244
           T+ P I  L K +Q D  ++ +A    Q +++  + V  + SD+D     ILR   A   
Sbjct: 186 TMPPEIAKLTKQFQNDPKQIEVARPA-QTAELITQHVTKSPSDKDEIKRGILRAIIASCE 244

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KN IVFC+ +  V    K L  H F    + G+LSQ  R   L+  ++G   + +A+DV
Sbjct: 245 VKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+PD+  V +     N ++ +HR GRTGRAGR G S  ++    Q+
Sbjct: 305 AARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQK 355


>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
 gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
          Length = 451

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 201/355 (56%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ +A  +  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +  +LL    R+
Sbjct: 29  VLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLLENPQRY 88

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  ++E L A  GV  AV +GG+ +  +   L    HI++
Sbjct: 89  ------FALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHILI 142

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P++R   +FSAT
Sbjct: 143 ATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTFLFSAT 202

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   +D V+V ++++ +    +    + + +  +D  +V+IL      + +
Sbjct: 203 MTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSFM 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST  +  R   +L       V L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 263 IFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGL 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q    + +R E+L 
Sbjct: 323 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLI 377


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 23/369 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 19  KAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-AKA 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS   + R L+ GA +++ TP
Sbjct: 76  RMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQDRKLERGADVLIATP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P 
Sbjct: 136 GRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDY------------RAVLVALSDRDNAIVNILR 240
           I  L + +    V V I  E+     I              RAVL  L   +N  +    
Sbjct: 196 IIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLRKLIHDENKEL---- 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               KNAIVFC+ +  +S   + L ++ F V  L G++ Q  R N L   ++ +  + +A
Sbjct: 252 ----KNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENKLTLLVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRA R G +  ++ +N Q+    + 
Sbjct: 308 SDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQKYISAIE 367

Query: 361 REANVSVVW 369
           + +  ++ W
Sbjct: 368 KISKENIEW 376


>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 471

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/376 (34%), Positives = 207/376 (55%), Gaps = 9/376 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L++ G+   T++Q   +   L   DV+  AQTG+GKT AF L +        ++ +PA
Sbjct: 16  EHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPML-------EQVNPA 68

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  + AL + PTRELA+QV + +E       + V    GG S+ R+ + L+ G+ IVVGT
Sbjct: 69  NRYVQALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKRGSQIVVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I   GL +  L  +VLDEADEML++GF  D+E IL  +P +R+   FSAT+ P
Sbjct: 129 PGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTAFFSATMEP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           AI  L+  + K  V V++ ++    + I   A  V     +  A++ IL     ++AI+F
Sbjct: 189 AIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPRALMPILEMEDPESAIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR + +  T+ L           G+L+Q +R   LQ  +  + R  +ATD+AARGI +
Sbjct: 249 VRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVATDIAARGIHV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            DL  VI+ EL  N ++ +HR GRTGRAG++G +V ++    + +  R+ +    SV + 
Sbjct: 309 DDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIEKRFKKSVEYC 368

Query: 371 PAPSVEAIRERDAQRI 386
             P+   I  R  +++
Sbjct: 369 KIPTQAQIAARHLEKL 384


>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
 gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
          Length = 536

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 180/342 (52%), Gaps = 8/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   T +Q   +   L   DV   AQTG+GKT AF L +   L     R  
Sbjct: 15  ILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRAR-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P  L + PTRELA QV    E       + +A+ IGGVS   +   LQ G  +++ 
Sbjct: 73  -ARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIA 131

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D   RGK L +  ++ +++DEAD MLD+GF  DIE I    P  R+ L+FSAT 
Sbjct: 132 TPGRLMDQFDRGKLLMMG-VETLIIDEADRMLDMGFIPDIEKICAKLPANRQTLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKN 246
              I  LAK +QKD  ++ +    +    I    V +  +D   R  A+  ++     KN
Sbjct: 191 PTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIEATNVKN 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC+ +  V      L +H      + G+L Q  RS  LQ  RDG+ ++ +A+DVAAR
Sbjct: 251 GIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+PD+  V +       E+ +HR GRTGRAGR G S  V+
Sbjct: 311 GLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVV 352


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 187/347 (53%), Gaps = 3/347 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI   I +AL   GY   T +QE  +   L+ +D+L  AQTG+GKT AF + L 
Sbjct: 1   MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E           AL +APTRELA+Q G  L       G+   V  GGVS   + R
Sbjct: 61  QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            ++ G  I+V TPGRL D + G+G + + H+K +VLDEAD MLD+GF  D++ IL   P 
Sbjct: 121 AMKAGVDILVATPGRLLD-LMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT+ P +  +A     + V++ +A  +     ID     V  S +   ++ +
Sbjct: 180 AKQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     +A+VF  T+       + L +   +  A+ G  SQ  R  AL   +  R RV 
Sbjct: 240 LRNQSVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATD+AARGID+ +L  VI+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 300 VATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTAL 346


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|315637556|ref|ZP_07892763.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
 gi|315478147|gb|EFU68873.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
          Length = 454

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 205/368 (55%), Gaps = 11/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + L    Y  LT +QE  +   L+ KD++  A+TGSGKTVAF L + + L A+
Sbjct: 7   NLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIVNKLKAK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        AL +APTRELA Q+ + L  L  +     V+ +C GGV    +   LQ+
Sbjct: 67  EFKIQ------ALILAPTRELANQIAQNLRNLSRHIHNVKVLTLC-GGVPFKPQVVSLQH 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            AHIVV TPGR+  HI+ K +N+ ++   VLDEAD+MLD+GF DDI  I+++ PK R+ +
Sbjct: 120 NAHIVVATPGRVLKHIKEKNINLENINTFVLDEADKMLDMGFYDDIMEIIENLPKNRQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I   A N  K+ +   I+ E  +   I+ +   V  S++   I  ++ ++ 
Sbjct: 180 LFSATYEKNIEIFASNILKNPIYKEISDE--KEILINQKFYEVTPSEKTALIPALISHNQ 237

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK  ++FC+ + +  +    L +    ++ L  +L Q++R   + +  +    + IATDV
Sbjct: 238 AKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPILIATDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+ + D++LVI+ +LS + +   HR GRT RAG+ G+++ +  +N   + E +  + 
Sbjct: 298 ASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFEIIKEKF 357

Query: 364 NVSVVWEP 371
           N   +  P
Sbjct: 358 NNIKIENP 365


>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
 gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 514

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/400 (35%), Positives = 213/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L    T      
Sbjct: 45  PEIV-SALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIETFAQLQK 103

Query: 65  -------------ENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                        + DR +    P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+D++P  R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 218 LDMGFIEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435


>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 452

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 193/342 (56%), Gaps = 9/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA    G+   T +Q   +   L+  D++  AQTGSGKT  F L +   LL EN +  
Sbjct: 30  LAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPILQALL-ENPQ-- 86

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               PL A  ++PTRELA+Q+  + E L +  G+  AV +GG+ +  +   L    H+VV
Sbjct: 87  ----PLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVVV 142

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGRL DH+   KG ++  +K +VLDEAD +L++ F  +I+ IL   PK+RR  +FSAT
Sbjct: 143 GTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKERRTYLFSAT 202

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   K+ V+V ++++      +    + +    +D  +V IL       A+
Sbjct: 203 MTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILNELAGNTAM 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T  +  + + VL    F  + +SG++SQ +R  AL   + G   + I TDVA+RG+
Sbjct: 263 VFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILICTDVASRGL 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P + LVI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 323 DIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQ 364


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 184/348 (52%), Gaps = 10/348 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+      +   +   
Sbjct: 48  IVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGEPGW 107

Query: 70  ------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                   A AP AL +APTRELAVQV  +L    A+  + +A   GG +   +  +LQ 
Sbjct: 108 DGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQR 167

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +L + P  R+ +
Sbjct: 168 GVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+   +  +A+ Y      +  A    E     DI          D+D  +   L+
Sbjct: 228 LFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARALQ 287

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+G+  + +A
Sbjct: 288 AEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVA 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++
Sbjct: 348 TDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 183/332 (55%), Gaps = 3/332 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++E GY + T +QE  +   L  +D+L SAQTG+GKT +F L +   L +   +  
Sbjct: 12  LSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDILASGRAK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P +L +APTRELA QV    E       + +A+ IGGVS   +   L  G  +++ 
Sbjct: 70  -ARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNTALDKGVDVLIA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH     + ++ +K +V+DEAD MLD+GF  D+E I+   P  R+ L FSAT+S
Sbjct: 129 TPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPLRQTLFFSATLS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  ++  +  +   + +A        +        +  +   + ++LR    KNA++F
Sbjct: 189 DDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLLRVETVKNAVIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  +S   K L +H F  VA+ G+++Q  R  AL   + G   + IA+DVAARG+D+
Sbjct: 249 CNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLIASDVAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             L  V + ++  N E+ +HR GRTGRAG+ G
Sbjct: 309 AGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSG 340


>gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
 gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
          Length = 478

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 198/354 (55%), Gaps = 6/354 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V  AV  G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L  +  +
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +
Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 196/355 (55%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      I+   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 195/357 (54%), Gaps = 12/357 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I EAL + GY N + VQ+ ++   ++ KD++V ++TGSGKT +FG+ +   +  E 
Sbjct: 11  ISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIPICENVNLEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL + PTREL +QV  +++ +     +  +   G      +  +L+   H
Sbjct: 71  RK------PQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALELKQRTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR  DHI    +++  +K  ++DE DEM ++GF D +E I+   PKKR  ++FS
Sbjct: 125 VVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKRVNMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  L + Y K  + + +  E      I +    +   ++ + +  IL      +
Sbjct: 185 ATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQHIYYEIEDKNKFDLLNKILITENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+FC T+ +V++  K++    +   AL G + Q +R + +   + G     +ATD+AAR
Sbjct: 245 SIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLVATDLAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFRE 362
           GID+ ++  +I+ ++    EN +HR+GRTGRAGR+G ++  V P       +R F++
Sbjct: 305 GIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYE-----DRFFKQ 356


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 188/335 (56%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+++GY + T +Q   +   L+ KD+L SAQTG+GKT AF + +   +  +     
Sbjct: 12  ILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPILQQIYDKVGSGK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+   ++     TG+   V  GGV    + + ++ G  ++  
Sbjct: 72  GKRKLKALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQVQAMRKGVDVLTA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   +++  ++ +VLDEAD+MLD+GF  DI+ IL   P KR+ L FSAT+ 
Sbjct: 132 TPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPHKRQSLFFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+K    D  +V+IA E      +D     V+  ++   + +++     +  +VF
Sbjct: 192 KEIIDLSKLILGDFEKVSIAPEKPTAERVDQAVYFVSKKNKAKLLKHLIDTEKPETLLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  KVL +   Q  A+ G  SQ  R  AL   ++G+  V +ATD+AARGID+
Sbjct: 252 SRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKLHVLVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +LELVI  +L + PE  +HR GRTGRA   G+++
Sbjct: 312 SELELVIQYDLPNVPETYVHRIGRTGRAKASGIAI 346


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 37/520 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  + + +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFGL L   
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + A +          AL + PTRELA+QV   L  L     GV +    GG  +  +   
Sbjct: 67  IDAADRSVQ------ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VVGTPGR+ DHI    L +  ++  VLDEADEMLD+GFR+DIE IL   P+  
Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +   FSAT+   I  LA+ + ++   + +       ++ +     V    R +A+  I  
Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  + AIVF +T+  V      L +      AL G+L+Q +R   +   R G   V +A
Sbjct: 241 AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D++ VI+ +L ++PE  +HR GRTGRAGR G +          +   + 
Sbjct: 301 TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLRDIQ 360

Query: 361 REANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-HDPEKIA 417
           R     +     P+  +A R R  Q + +    L S +      +V+ L+A+  DP ++A
Sbjct: 361 RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA 420

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGS 475
           A  LR                ++  RDR         + G  + +  G+    L  +VG 
Sbjct: 421 ATLLR----------------MIMQRDR-------IDLPGARQTDDIGTGRVRLFFNVGR 457

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           + +   R L+  +   +GI+ +SIG+I +    +FVEV A
Sbjct: 458 RMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDA 497


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 203/360 (56%), Gaps = 10/360 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ L   +  ++  F       AL
Sbjct: 2   GYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHI--DSAHFQTQ----AL 55

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA QV   L  L  + +   ++ +C GG  +  +R  L +  HIVVGTPGR+ 
Sbjct: 56  ILCPTRELADQVSNVLRQLARFTRNIKILTLC-GGQPMSAQRDSLVHAPHIVVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI+ + L +  L+ +VLDEAD ML++GFRDD+E I+ ++P  R+ L+FSAT    I  L
Sbjct: 115 DHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAAL 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           ++ +Q++A+ V +  E  +   I+ + +  +  ++ + ++++L      + +VFC+T+  
Sbjct: 175 SQRFQREALSV-VTEEVSELPAIEQQFIEASHGEKLSLLISLLSERQPSSCVVFCNTKRE 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L       + L G+L Q++R   L    +G  RV +ATDVAARG+D+  L LV
Sbjct: 234 CDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ +L+ +PE  LHR GRT RAG +G +V  +  +   RA  L       + W  A S++
Sbjct: 294 VNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWVAASSLK 353


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 189/345 (54%), Gaps = 3/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY N T +Q   +   L  KD+L  AQTG+GKT AF + +   L   
Sbjct: 7   NITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQVL 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R     A   L + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 67  KNRDKSIKA---LILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++ +++  VLDEAD MLD+GF  DI+ +L   PK+++ L F
Sbjct: 124 DILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K  V++ I  ++     I+     V   ++   +++IL     +
Sbjct: 184 SATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQ 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL++      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQ 348


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 194/360 (53%), Gaps = 7/360 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 20  AVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLTLLEKGRAR---AR 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRE+A QV    +       + VA+ IGGVS   + R L+ GA +++ TPG
Sbjct: 77  MPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQDRKLERGADVLIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT++P I
Sbjct: 137 RLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAK--NAIV 249
           T L K +    V V +   +   + +  R V       D   V   +++  G+K  NAI+
Sbjct: 197 TKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLRELIQNEGSKLQNAII 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  +S   + L +H F V AL G++ Q  R N L   ++ +  + +A+DVAARG+D
Sbjct: 257 FCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNKLTLLVASDVAARGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+    +   ++  + W
Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQKYINAIEEMSHEKIEW 376


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 218/392 (55%), Gaps = 18/392 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+++ GY + +++Q A + P L   DV+  AQTG+GKT AF + + S +  +  
Sbjct: 30  PAVL-QAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILSKI--DTS 86

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL +APTRELA+QV      +      V V    GG S   +   L+ GA 
Sbjct: 87  RRDTQ----ALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRGAQ 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L++S L  +VLDEADEML +GF +++E IL  +P+ +++ +FS
Sbjct: 143 VVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVALFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  +   Y  D V V + ++     +I  R + VA   + +A+  IL       
Sbjct: 203 ATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEEGDA 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +       L    F   A++G+++Q +R   +  ++DG   + IATDVAAR
Sbjct: 263 MIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365
           G+D+  +  VI+ ++  + E+ +HR GRTGRAGR G +V FV P+  +R   +   +A  
Sbjct: 323 GLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPR--ERHLLKSIEKATR 380

Query: 366 SVVWEPA-PSVEAIRERDAQRILQDPLFLDSI 396
           S + E   PSVE +   +AQR+ +   F DSI
Sbjct: 381 SKLIEAELPSVEDV---NAQRVAK---FRDSI 406


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 202/383 (52%), Gaps = 15/383 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P    + + L    +   T VQ   +   L+++DV+  AQTG+GKT AF L L   
Sbjct: 3   FDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLLHN 62

Query: 62  LLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHR 116
           L AE     P +A    A+ +APTRELA Q+ +++E     T        GG    +   
Sbjct: 63  LQAE-----PLAADKVNAIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDT 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RR LQNGA +V+ TPGRL  HI    ++ SH+K  +LDEAD MLD+GF DDI  +++  
Sbjct: 118 QRRGLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ +MFSAT+ P I  LAK    + V V IA  +R    I   A +   + +   I 
Sbjct: 178 PKDRQTIMFSATMPPKIRLLAKTILNNPVEVKIAV-SRPPESIMQTAYICYEAQKHGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++     A   I+F  ++  V    K   +    V  +  +L Q +R + +   ++ R  
Sbjct: 237 HLFAEQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVS 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA  KGMS+  + +  Q + 
Sbjct: 297 ILVATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQYKF 356

Query: 357 ERL--FREANVSVVWEPAPSVEA 377
           +++  F E ++  +  P    EA
Sbjct: 357 KQIEDFLEKDIYKIPMPVELGEA 379


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/381 (33%), Positives = 210/381 (55%), Gaps = 13/381 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T VQ   +   L  +D++  AQTG+GKT +F L +   L     R   A
Sbjct: 28  QAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGRCR---A 84

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  +++ TP
Sbjct: 85  RMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVDVLIATP 144

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P
Sbjct: 145 GRLLDLFERGKIL-LSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFSATMPP 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      AI+FC
Sbjct: 204 AIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHTAIIFC 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AARG+D+ 
Sbjct: 264 NRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAARGLDVK 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLF-----REA 363
            +  V + ++ ++P++ +HR GRTGR G  G ++ FV P + +  A  E+L      R  
Sbjct: 324 GISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAIEKLMGVEIPRLG 383

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
           N      P+ S EA+  + A+
Sbjct: 384 NRKKNAHPSKSEEAVSPKQAK 404


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 191/349 (54%), Gaps = 15/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66
           I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ +   ++A +    
Sbjct: 74  IVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 133

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +P + P AL I PTREL  QV ++L          +    GGV+   +   L+ GA
Sbjct: 134 EDLLNP-NKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFEPQIEALERGA 192

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L   P+ R  ++F
Sbjct: 193 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSRVPENRHTMLF 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+   +  LA+ +      +     + Q+  ++      YR   V   ++   +  IL
Sbjct: 253 SATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 309

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++FC T+ + +R  + L    F V +L G+L Q  R  AL+  R+G+  V +
Sbjct: 310 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRNGKVDVLV 369

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 370 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 418


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 185/335 (55%), Gaps = 2/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T VQ+  +   L+ +D+   AQTG+GKT  F L +   L  E        
Sbjct: 15  AVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPMLEIL--ERQAIRGRR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QV   +        +  AV  GGV++  +  +L+ G  IVV TPG
Sbjct: 73  HVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLANLRRGVDIVVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S  I
Sbjct: 133 RLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKERQNLLFSATFSREI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T LA ++ KD V+V +A  N     +D    LV    +   +  ++     +  +VF  T
Sbjct: 193 TELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLISEGKWQQVLVFTRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+ +L
Sbjct: 253 KHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVATDIAARGLDIDEL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +  ++
Sbjct: 313 PHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLV 347


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 193/368 (52%), Gaps = 6/368 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++S   + + T VQ+ ++   L  KD++V +QTGSGKT AF + +   +  + ++    
Sbjct: 17  KSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDENK---- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA+QV  ++  +     + VA   G    + + ++L+   H+VVGTP
Sbjct: 73  --PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQKTHVVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+     + S +K +V+DEADEM ++GF D IE I+    KKR  ++ SAT+  A
Sbjct: 131 GRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLSATMPSA 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TL+  Y KD +   I  E+     I      V   D+   + +I       + I+FC+
Sbjct: 191 IETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEYRDKMKLLSDITIVENPDSCIIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V      L    +    + G + Q++R   +   + G  R  +ATDVAARGID+ +
Sbjct: 251 TKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LVI+ ++  + E+ +HR GRTGR  R+G ++  + Q   +  + + R     +     
Sbjct: 311 ISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIHRYIGKEIPLMQR 370

Query: 373 PSVEAIRE 380
           P +E + +
Sbjct: 371 PEIETVND 378


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      I+   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|91218309|ref|ZP_01255254.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
 gi|91183518|gb|EAS69916.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
          Length = 443

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/394 (34%), Positives = 214/394 (54%), Gaps = 30/394 (7%)

Query: 11  IGEALSERGYVNL-----TSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           I E L +R  V+L     T VQE  +   L + +D++V ++TGSGKT AFGL L   +  
Sbjct: 10  INEHL-QRSLVDLQISVPTEVQEKTIPVVLNQNEDLVVLSKTGSGKTAAFGLPLLQLIDT 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRD 120
           EN           L +APTREL  Q+   L     W      + +A   GG  +  +  +
Sbjct: 69  ENTSIQ------TLILAPTRELGQQIYNNLISFASW---SDQIHIASLCGGTPIKPQIEN 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+VV TPGRL D I+ + +++ HLK VVLDEADEML    + +++ I+ + PK R
Sbjct: 120 LNSTTHLVVATPGRLLDLIKREAIDLKHLKYVVLDEADEMLS-ALKFEVDTIIKAIPKTR 178

Query: 181 RMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R L+F+AT+S  +  L +NY  KD V + + +    H  ID+  V+V   ++ + +++ L
Sbjct: 179 RTLLFTATMSGTVKQLVQNYMSKDLVTIEVDTTTLGHQGIDHHYVVVEPIEKLDVLLHFL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G +  I+FC T+A+V++  K LA + F   A+ G L+Q  R   +   R+G   + +
Sbjct: 239 NSKGGERGIIFCKTKAAVNKLAKKLAINKFSSGAIHGSLTQGIRDRIMGQFREGHIDILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ ++  V++  L    E  +HRSGRT RAG KG+S+ ++    +  AE  
Sbjct: 299 ATDLAARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTARAGAKGLSLTILQH--EEIAEIT 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
             E  + +V+         ++ DAQ I ++   L
Sbjct: 357 DFENELGIVFHK------FKKADAQSIEENNALL 384


>gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
 gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
          Length = 750

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 343 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 402

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  IV+ T
Sbjct: 403 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIAT 462

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 463 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 522

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++   
Sbjct: 523 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 582

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   R+ R
Sbjct: 583 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 642

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++  F+  +N
Sbjct: 643 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTLEN 700


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score =  208 bits (530), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 205/385 (53%), Gaps = 15/385 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 31  PKVL-KAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 88

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 89  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKGVDV 146

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 147 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     R+ +A +      I+   ++   S +D         +  ++ 
Sbjct: 207 TMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKRKVLRALID 266

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAIVFC+ +  V    K L ++ +    + G+L Q +R+  L   RDG  +  
Sbjct: 267 AEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSLKFL 326

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +     +R  E 
Sbjct: 327 IASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERNLED 386

Query: 359 LFR--EANVSVVWEPAPSVEAIRER 381
           + R  +  +  +  P  + EA +E+
Sbjct: 387 IERLVQREIPRLDNPLGTKEAPKEK 411


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 185/333 (55%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY+  + +QE  +   L  +D+L  AQTG+GKT AF L +   L+         
Sbjct: 14  KALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQNLMERPKNRQKK 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA+Q+   +E   A T +  AV  GGVS   + + L+ G  I+V TP
Sbjct: 74  KPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQSLRRGIDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    +++S ++  VLDEAD MLD+GF  D++ ++   PKKR+ L+FSAT+   
Sbjct: 134 GRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKKRQTLLFSATMPDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V+V +   +     I+     V  +++   +V++L +    + +VF  
Sbjct: 194 IQALAAKLLHNPVKVEVTPVSSTVDLIETSLYYVDKANKWPLLVHLLEHEDVSSTLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L +      A+ G+ SQ  R  AL   + GR RV +ATD+AARGID+ +
Sbjct: 254 TKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLVATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 314 LSCVINFDLPNVPETYVHRIGRTGRAGLGGRAI 346


>gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|224030151|gb|ACN34151.1| unknown [Zea mays]
          Length = 758

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 351 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 410

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  IV+ T
Sbjct: 411 AEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIAT 470

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 471 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 530

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++   
Sbjct: 531 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 590

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   R+ R
Sbjct: 591 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGKSQDQREISLDGFRNRR 650

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++  F+  +N
Sbjct: 651 FNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTLEN 708


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 186/335 (55%), Gaps = 5/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LSE GY   T +Q   +   L  +D++  AQTG+GKT AF L L   L+      S  
Sbjct: 17  QTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQLMQHPA--SDT 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P+ AL + PTRELAVQV   +      TG+  A+  GGVS+  +   LQ G  +++ T
Sbjct: 75  ARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQAGVDLLIAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L++ HL  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT   
Sbjct: 135 PGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFSATCDD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +  L++   +D   + +A  N   ++++ R   V   +R  A+V ++++  G    ++F
Sbjct: 195 NLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVD-GERKVALVEHLIKVKGWAPVLIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAARG+D+
Sbjct: 254 SRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQALVATDVAARGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DL  VI+ E     E+ +HR GRTGRAG KG+++
Sbjct: 314 LDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAI 348


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 11/351 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+      +   +
Sbjct: 46  PKIV-EALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGE 104

Query: 68  RF-------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                      A AP AL +APTRELAVQV  +L    A+  + +A   GG +   +  +
Sbjct: 105 PGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEE 164

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +L + P  R
Sbjct: 165 LQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVR 224

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++FSAT+   +  +A+ Y      +  A    E     DI          D+D  +  
Sbjct: 225 QTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVAR 284

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+G+  +
Sbjct: 285 ALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDI 344

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++
Sbjct: 345 LVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/426 (30%), Positives = 229/426 (53%), Gaps = 18/426 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L   DVL  AQTG+GKT AFG+     +       S A    AL
Sbjct: 21  GFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTIERI------DSKARQVQAL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+QV  EL  +     V      GG  + R+ R L+    IVV TPGRL DH
Sbjct: 75  VLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKKNPQIVVATPGRLMDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K + +  ++ V+LDEADEML++GF +DIE IL   P++R+ L+FSAT+ P I  +A+
Sbjct: 135 MKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLLFSATMPPQIKKIAE 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + K    + + ++     +I+ + + +    + + +  ++     + +I+F  T+  V 
Sbjct: 195 RFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLIDIDSPELSIIFARTKKRVD 254

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ L +  +    L G+L+Q +R   ++  ++G   + +ATDVAARG+D+  +  V +
Sbjct: 255 EVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATDVAARGLDISGVTHVYN 314

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
            ++  +PE+ +HR GRTGRAG+ G ++ F+ P+    + + + R  N  +     P++  
Sbjct: 315 FDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFG-QVKAIERVTNKKMNRRHVPTIAE 373

Query: 378 IRERDAQRILQDPLFLDSIQ-GDEK---KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
           + E + ++  ++   ++ +Q GD K   ++   LL +++  +I A  LR    GL    +
Sbjct: 374 VLEGNQKQAAEE--LIERVQAGDFKAYTQLATELLEEYEAVEILAAALR----GLTKEPD 427

Query: 434 ITPVSL 439
            TPV +
Sbjct: 428 STPVEI 433


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 510

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/337 (36%), Positives = 183/337 (54%), Gaps = 2/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +  N   S 
Sbjct: 15  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSMPANTSASG 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G  IVV T
Sbjct: 75  KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I TLA N       + +A  N     +  +   V    +   + ++++ H     +VF 
Sbjct: 195 EIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+ 
Sbjct: 255 RTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351


>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 433

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKM- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           AEN   +  S    L + PTRELA QV   +E         V    GGV V  + + L+ 
Sbjct: 64  AENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA       V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANEMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
 gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
          Length = 469

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 183/344 (53%), Gaps = 13/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +   L     
Sbjct: 11  PKVL-KAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMIHKLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQDVLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------NAIVNIL-- 239
           T++P I  +   +     R+ +A +      I   AV+   S RD       A++  L  
Sbjct: 187 TMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEKRAVLRALID 246

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   RDG  R+ 
Sbjct: 247 AEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDGFRDGSVRLL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G
Sbjct: 307 IASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSG 350


>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
 gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
          Length = 459

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 131/344 (38%), Positives = 189/344 (54%), Gaps = 13/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q+  L   L  +DV+   QTGSGKT AFGL L   L    D   P   
Sbjct: 19  LATLGYEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQKL----DITKPHVQ 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            L L   PTRELA QV +E+  L  K   + V    GG+    +   L++GAHI+VGTPG
Sbjct: 75  SLVLC--PTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  +  +VLDEAD ML++GF+  ++ I+   PK+R+ L+FSAT    I
Sbjct: 133 RIEDHMNRGTLKLDRVTTLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTLLFSATFPDQI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVF 250
            ++AK      V V +AS    H D         +SD   R  A+  +L  H   + +VF
Sbjct: 193 QSVAKRIMDKPVMVAVAST---HDDSSIEQHFYKVSDDEQRMTALRLLLLQHKPVSTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+A      K L  H F  +AL+G+L Q++R   +    +    V +ATDVAARG+D+
Sbjct: 250 CNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVATDVAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             L+ VI+  ++ +PE  +HR GRTGRAG KG++  +  +N  R
Sbjct: 310 DALDAVINYHIAHDPEVHVHRIGRTGRAGSKGVACSLYRENPYR 353


>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 520

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 7/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +P+ +  A+++ GY   T VQ   + P L   D++VS+ TGSGKT +F L AL   L A 
Sbjct: 1   MPEALARAVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAAR 60

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
            D         S P  L +APTRELA+QV +   ++     G+ VA  +GGV    + + 
Sbjct: 61  GDGKRREKGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL DH+      +++++ +VLDEAD MLD+GF DDI  I  ++P  R
Sbjct: 121 LRGPLDVLIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAAR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-IL 239
           + +M+SAT +  +  LA+   ++  R+ IAS    H+DI+ R          NA+++ IL
Sbjct: 181 QTVMYSATFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRLHWADNFAHKNALLDHIL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF ST+         LAE    V +L G   Q  R+  LQ +R    ++ +
Sbjct: 241 TERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+P +  VI+  L    E+ +HR GRTGRAGR G++V
Sbjct: 301 ATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAV 346


>gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
 gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
          Length = 478

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 127/380 (33%), Positives = 206/380 (54%), Gaps = 7/380 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354

Query: 360 FREANVSVVWEPAPSVEAIR 379
                  +     PS E ++
Sbjct: 355 EEYIGYEIRKASLPSDEEVK 374


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
 gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
          Length = 643

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/421 (33%), Positives = 220/421 (52%), Gaps = 23/421 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q+  +   +   DVL  AQTGSGKT AF L L   +  +        
Sbjct: 21  ALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++      V V    GG     + R L+ G  IVVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGPQIVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+   
Sbjct: 135 GRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEP 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + KD   + I +      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374

Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLR 422
           P  + + +R     A++I Q    L+S   D+ +    LLAK  P      E +AA  L+
Sbjct: 375 PDADLLSQRRQAKFAEKIQQQ---LESSDLDQYR---SLLAKMSPSEDVDMETLAAALLK 428

Query: 423 I 423
           +
Sbjct: 429 M 429


>gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
 gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
          Length = 432

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIA 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 TLEAE 356


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E+ R+R
Sbjct: 366 NRKLPELTIEGMESTRKR 383


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 185/340 (54%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   GY   T +Q   +   L  KD++  AQTG+GKT AF L L   LL       
Sbjct: 114 IVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNPIAIK 173

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             SA  A+ ++PTRELA+Q+         +  +     IGG  + ++ RDL  G  I+V 
Sbjct: 174 GRSA-RAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGVDILVA 232

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  KGL +   K +VLDEAD+MLD+GF   ++ I+    K R+ L+FSAT+S
Sbjct: 233 TPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFSATMS 292

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + Y  D V+V++  EN     I+   + ++  ++  A+  I+  +  K  IVF
Sbjct: 293 KEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQNKGLALQRIISANPKKRVIVF 352

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L        A+ G  SQ +R  AL   + G+  + IATD+AARGID+
Sbjct: 353 SRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKTYILIATDIAARGIDI 412

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           P +E+VI+ +L + PE+ +HR GRT RAG  G ++ F  P
Sbjct: 413 PGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAP 452


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 210/379 (55%), Gaps = 12/379 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 19  LTSLGYESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVKRFRVQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             +L + PTRELA QV +E+  L A+T   + V    GG+    +   L++GAHI+VGTP
Sbjct: 75  --SLVLCPTRELADQVAKEIRKL-ARTIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R   LN+  L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+FSAT  P 
Sbjct: 132 GRIEEHVRKGTLNLDDLEMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTLLFSATYPPQ 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I ++A       V   + S +   S   +   +     R  A+  +L  H  ++ +VFC+
Sbjct: 192 IKSIADRIMFKPVMAKVESTHDDSSIQQHFYKVDGNEQRLTALRLLLLKHRPESTVVFCN 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+      +  L ++ F  +AL G+L Q+ER  AL    +    V +ATDVAARG+D+  
Sbjct: 252 TKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVATDVAARGLDIDS 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ VI+  L+ + E  +HR GRTGRAG KG++  +I      +   L    + ++  E  
Sbjct: 312 LDAVINYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKEHYKVAMLEDYLDRAISGEAL 371

Query: 373 PSVEAIRE---RDAQRILQ 388
           PS++ + +   R A   LQ
Sbjct: 372 PSMDLLDQPTFRPAMTTLQ 390


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 233/478 (48%), Gaps = 27/478 (5%)

Query: 4   FENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FEN+   + EA    L   G+ + T +QE  +   L   DVL  +QTG+GKT A+ L + 
Sbjct: 5   FENLG--LSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL + PTRELA QV   L+    +  + +    GG S+ R+ R
Sbjct: 63  EQIDTRNSNVQ------ALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ D +  K L +  L+  VLDEADEML +GF DD++ IL  +P  
Sbjct: 117 SLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTPDA 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238
           R    FSAT+   I  L   + K  V V++       + ID    +V     +  A+  I
Sbjct: 177 RNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQPI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   R+G+ ++ 
Sbjct: 237 LEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIKLV 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRR 355
           +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +   I + M R+
Sbjct: 297 VATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMVRQ 356

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            E+  R+   +        VEA R    Q  +++ L  + +      +V  L  ++DP+ 
Sbjct: 357 IEKRLRQKLETCKLPSRSQVEAKRLEKLQNEIKESLAGERM-ASFLPLVRELSDEYDPQA 415

Query: 416 IAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           IAA  L++     C          PE   P  ++  + ++  +      G  +R N K
Sbjct: 416 IAAAALQMIYDQDCPDWMKTDWEVPESTVPKPVIKRKGKYNSNHSKHN-GNSNRGNRK 472


>gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 435

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 195/351 (55%), Gaps = 2/351 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFAPEIL-RAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKIF 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        V V    GGV +  + + L+ 
Sbjct: 65  -DNPMETQRSNARALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ I+ +  K+R+ L
Sbjct: 124 GTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +       +N+ S+N     +      V    +   +  ++    
Sbjct: 184 LFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSELIGKKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +AT+V
Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRALVATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R
Sbjct: 304 AARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 195/357 (54%), Gaps = 8/357 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P +I +A+    Y   T VQ A +   L ++D+L +AQTG+GKT AF L   S 
Sbjct: 59  FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118

Query: 62  L-----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           L        + R +    P  L I PTRELA Q+      +  +T  +    +GGV  + 
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++  L+ G  I+V TPGRL D I     N+S ++ +V+DEAD MLD+GF   ++ I+  +
Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT+        ++  +D VRV IA+       +D   + V+   +++ +V
Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVSFDSKNDVLV 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+  GA   IVF  T+       + L        A+ G+ SQ +R  AL+  RDGR+ 
Sbjct: 299 EVLKREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDGRSD 358

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           V +ATDV ARGID+ D+  V++ ++   P + +HR GRTGRAG  G ++ FV  Q++
Sbjct: 359 VLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDI 415


>gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 429

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 193/347 (55%), Gaps = 11/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS+ G+   T +Q+  + P L  +D++  AQTGSGKT+A+ L L      +    +P +
Sbjct: 19  ALSKAGHRTPTPIQQQAIPPMLAGRDLIAMAQTGSGKTLAYALPLL-----QQRMLAPET 73

Query: 74  APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
           AP    A+ + PTRELAVQV   L  L A     +   V IGG S++ +   L+ GA IV
Sbjct: 74  APRVLGAVVLVPTRELAVQVDETLRQLAAHLPRRLKTVVAIGGSSINPQLLALRGGADIV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L +  +  +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT
Sbjct: 134 VATPGRLLDLVDHNALRLGEVATLVLDEADRLLELGFGAELDRILALLPTQRQSVLFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PAI  LAK   +D +R+ I +   Q   I+ RA+ V    R   + ++L  HG  + +
Sbjct: 194 YPPAIAALAKRRLRDPLRITIDATPEQAPAIEQRALAVDAGQRTQLLRHLLTEHGWSHVL 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R +  +  + L +       L GELSQ  R+  LQ  +    +V +ATD+A RGI
Sbjct: 254 VFVASRHTADKVAEKLGKAGINAQPLHGELSQGRRARTLQSFKQHEVQVLVATDLAGRGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           D+  L  VI+ +L  +  +  HR GRT RAG  G+++ F+   N Q+
Sbjct: 314 DIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFITADNAQQ 360


>gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B]
 gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 439

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 201/350 (57%), Gaps = 11/350 (3%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---- 57
           F ++P    + +AL+E G+ + T +Q   L   L +KD+   AQTG+GKT+AF +A    
Sbjct: 11  FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L +T + E+ + +    P A+ +APTRELA+Q+ ++   L   +G+ V +  GG     +
Sbjct: 71  LLTTPVPEHRQLN---QPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ L  G  +++GT GR+ D++R   +N+  ++AVVLDEAD M DLGF  DI F+ +  P
Sbjct: 128 RKVLDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMP 187

Query: 178 --KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K+R  ++FSAT+S  +  LA ++  D V+V IA E +   +I       ++ D+   +
Sbjct: 188 GAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLL 247

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++     + AIVF +T+         L     +V  L+G++ Q++R   L+       
Sbjct: 248 HSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSEL 307

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 308 DILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 205/376 (54%), Gaps = 21/376 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +QE  +   +  KD++  AQTG+GKT AF L + + L  E  R        AL 
Sbjct: 23  YKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPILNAL-DEGKR-----DIQALI 76

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL++Q+ +E+E L     V V    GG  + ++   L+    IVVGTPGR+ DH+
Sbjct: 77  LTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLSKLKETVQIVVGTPGRVLDHM 136

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   L+   +  +VLDEAD+M+++GF +D+E ++  +P +R++L+FSAT+   +  LA  
Sbjct: 137 KRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQRQVLLFSATMPDLVKKLAHR 196

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           + K    + I  + +    I+    +V  SD+ +A+V++L        IVF +T+  V +
Sbjct: 197 FMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVLEQEQPFLTIVFANTQVRVQQ 256

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            T  L E+     AL G+LSQ +R   ++  R+ R +  IATD+AARG+D+  +  VI+ 
Sbjct: 257 LTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLIATDIAARGLDVEGVTHVINY 316

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           +L ++ ++ +HR GRTGRAG+KG ++ +I    +    R  +    S+            
Sbjct: 317 DLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARFAKATKASI------------ 364

Query: 380 ERDAQRILQDPLFLDS 395
               +RILQ+   LD+
Sbjct: 365 ---EERILQEGRHLDA 377


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 196/345 (56%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY+  TS+QE  +   L ++D+L  AQTG+GKT +F + +   L A 
Sbjct: 7   NIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQA- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL + PTRELA+Q+   ++     T V   V  GGV+   +   L+ G 
Sbjct: 66  NKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    +++++++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L K+  K+ V++ I  ++     I      V   ++   +++IL+    +
Sbjct: 186 SATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQKAEDR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  ++L +      A+ G  SQ  R +AL   + G+ +V +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG +G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQ 350


>gi|329897169|ref|ZP_08271909.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
 gi|328921324|gb|EGG28718.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
          Length = 397

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRF 69
           + + + G+V  + +Q AIL   LR  D +  AQTG+GKT AF + + + LLA   +++RF
Sbjct: 28  KGIKDLGFVTCSPIQGAILPHTLRGLDAIGKAQTGTGKTAAFLITVFNDLLAHPIDDERF 87

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128
                P AL IAPTREL +Q+  + + L   TG+ V   IGG+   ++ + L Q    +V
Sbjct: 88  --VGEPRALVIAPTRELVMQIAEDAKDLGKYTGLRVVTLIGGMDYQKQLQKLDQEPVDLV 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186
           V TPGRL D +  + L +  ++ +VLDEAD MLD+GF   ++ I+ ++P K  R+ L+FS
Sbjct: 146 VATPGRLIDFMTRQDLFLDRVETIVLDEADRMLDMGFIPQVKRIVRATPPKEHRQTLLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  L++ +    +++ I  E+   +++D +  LV+   R   ++N+LR   A +
Sbjct: 206 ATFTQDIINLSEQWTYKPIKIEIEPESVATANVDQKVYLVSAEQRYKILLNLLRDEAATS 265

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF + R  V    + L +       LSGE+ Q +R+  L+  + G+ +V +ATDVA R
Sbjct: 266 VIVFANRRDQVRHLYERLRKASIPCGVLSGEIPQNKRTRTLEDFKRGKLKVLVATDVAGR 325

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQNMQRRAER 358
           GI +  +  V++  L  +P++ +HR GRTGRAG  G S+        F++P       ER
Sbjct: 326 GIHVDGVSHVVNYNLPEDPDDYVHRIGRTGRAGATGTSISFASEDDAFLLPDIEALLGER 385

Query: 359 L 359
           L
Sbjct: 386 L 386


>gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
          Length = 432

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIL 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 205/379 (54%), Gaps = 8/379 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + I  AL+  GY   T +Q  ++   L +KD++  +QTGSGKT A+G+ L 
Sbjct: 4   KHFADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+  N+     + P AL + PTRELA+QV  ++  +     +      G    H ++ 
Sbjct: 64  E-LVDWNE-----NKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+ VGTPGR+ DHI    L+++ +  +V+DEADEML++GF + ++ I+ + P  
Sbjct: 118 ELKQRTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPND 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    +  L++ Y  D V + I +     + ID+  + V  +D+   + ++L
Sbjct: 178 RVTMLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLALLQDLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+  V    + LA+  +    + G + Q ER   +   R G+ R  I
Sbjct: 238 VVENPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ +I     +R   +
Sbjct: 298 ATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADI 357

Query: 360 FREANVSVVWEPAPSVEAI 378
                 ++    APS EA+
Sbjct: 358 EAYIGFAIPQVKAPSEEAV 376


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 184/348 (52%), Gaps = 10/348 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+      +   +   
Sbjct: 48  IVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPALQRAIGPGEPGW 107

Query: 70  ------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                   A AP AL +APTRELAVQV  +L    A+  + +A   GG +   +  +LQ 
Sbjct: 108 DGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGRAYEPQIEELQR 167

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +L + P  R+ +
Sbjct: 168 GVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETLLAAVPAVRQTM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+   +  +A+ Y      +  A    E     DI          D+D  +   L+
Sbjct: 228 LFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHMDKDELVARALQ 287

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+G+  + +A
Sbjct: 288 AEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRAFRNGKVDILVA 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++
Sbjct: 348 TDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLV 395


>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 489

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 196/343 (57%), Gaps = 6/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ + E L + G+   T +Q  +L   L  KD+   AQTG+GKT AF + + S LL  
Sbjct: 29  DLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFSKLLGL 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R    + P AL +APTRELA+Q+  E E L   T   +A  IGG+   ++   L+ GA
Sbjct: 89  ENRSK--TLPSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILKQGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
            I++GTPGR+ D+ + +G+  +H +K+VV+DEAD +LDLGF  D+ +IL   P  +KR+ 
Sbjct: 147 DILIGTPGRIIDYYK-QGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKRQS 205

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  L  +Y      +++  E      ID     V    +   ++ + +  
Sbjct: 206 MLFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILYHVGQDQKLPLLLGVFKNE 265

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T++ V      L  + F    ++G+L Q++R   ++  ++G   + +ATD
Sbjct: 266 DWTRALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSILVATD 325

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VA+RGI + D+  VI+ +L  +PEN +HR GRT RAG+ G ++
Sbjct: 326 VASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAI 368


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +   +  +N +     
Sbjct: 15  AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   EL  L +   V   V  GG  + R+   L+    I+VGTPG
Sbjct: 72  ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHPQILVGTPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P  R+ L+FSAT+   I
Sbjct: 129 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +D   V+IAS+      +D   V     ++ +A+  +      + AIVF  T
Sbjct: 189 KKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L    ++   + G+L Q  R   L+  + G  +  +ATDVAARG+D+  +
Sbjct: 249 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
             V + ++  +PE+ +HR GRTGRAG  G+SV FV+
Sbjct: 309 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 344


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/377 (34%), Positives = 197/377 (52%), Gaps = 8/377 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 15  AVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    E       + VA+ IGGVS   + R +  GA +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKIDRGADVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 132 RLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNIL-RYHGAKNAIVF 250
             L + + ++  ++ +A  +    ++    V     D +    +  +L      KNAIVF
Sbjct: 192 QRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLGEAEDLKNAIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   + L  H F V  L G++ Q+ R   L+  R G   + +A+DVAARG+D+
Sbjct: 252 CNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW- 369
           PD+  V + ++  + E+ +HR GRTGRAGR G+S  ++     +    + +  N S+ W 
Sbjct: 312 PDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAIEKLINKSITWL 371

Query: 370 -EPAPSVEAIRERDAQR 385
            EP     A  ER  +R
Sbjct: 372 GEPLDFEAAEAERKERR 388


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 192/342 (56%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQMIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKNRQQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +      V I ++      I+   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 195/351 (55%), Gaps = 8/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  A+ E G+   T++Q A +   LR +DV+  AQTG+GKT AF L L + +  E
Sbjct: 133 GLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLAHIDPE 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
                      AL +APTRELA+Q  + +E   AK+ GV VA   GG S   + + L+ G
Sbjct: 193 KREVQ------ALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLKALEGG 246

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D +    L +  ++  VLDEADEML +GF +D+E I    P+ R   +
Sbjct: 247 AQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEGRISAL 306

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  +A+ +  DA  V I+      S +     +V    +  A+  +L    A
Sbjct: 307 FSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVLAVTEA 366

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VF  TR++    T  L        ALSG++ Q+ER   +  +RDG   V +ATDVA
Sbjct: 367 QAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLVATDVA 426

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ARG+D+  + LV++ ++    +  +HR GRTGRAGR G S+ FV P+   R
Sbjct: 427 ARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPR 477


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 188/337 (55%), Gaps = 8/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+   T VQE  +   L  KD++  AQTG+GKT AFG+ +  T+  ++ +     
Sbjct: 25  SIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIPIVETVNTKSRKIQ--- 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV-VGTP 132
              AL + PTRELA+QV +E++ +  +  +      GG S+  +   L+ G  +V VGTP
Sbjct: 82  ---ALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLKKGKDVVIVGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K LN++ +K  VLDEAD MLD+GF +DIEFI + +P  ++ L+FSAT+  A
Sbjct: 139 GRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQTLLFSATMPKA 198

Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  LA+ +  D    V I  E      I  +A  V        +  IL  +  K +IVF 
Sbjct: 199 IMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFETLTKILNENEGKKSIVFT 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+      +K L    F   A+ G+ SQ +R   L+  R  R  + +ATDVAARG+D+ 
Sbjct: 259 ETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDILVATDVAARGLDIK 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +++V +  L  + E+ +HR GRTGRAG+ G+++ +I
Sbjct: 319 GVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISII 355


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 188/338 (55%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSP 71
           +A+S++GY   + +Q   +   L  KDVL SAQTG+GKT  F L +   +  +   R  P
Sbjct: 14  KAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLHIITKQPFQRHRP 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A   L + PTRELA Q+ +E++   A T V   V  GGV+ + + R L+ G  I+V T
Sbjct: 74  VKA---LIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRALKQGTDILVAT 130

Query: 132 PGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGRL D H +G   N+  ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S
Sbjct: 131 PGRLLDLHSQGV-FNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+++  + V V    EN     +         S + N ++ ++     +  ++F
Sbjct: 190 KEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKLITEGNWEQVLIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +   +  A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+
Sbjct: 250 TRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  VI+ EL + PE+ +HR GRT RAG  G ++ ++
Sbjct: 310 PLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIV 347


>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 448

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 192/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E   + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +  TLL   
Sbjct: 26  VTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 86  QRL------YALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V IL      
Sbjct: 200 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 260 SFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSILLATDVAS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQ 364


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 186/335 (55%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY + T +Q   +   ++  D+L +AQTG+GKT  F L +   LL    +     
Sbjct: 19  AVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHRLLQNPAQGRKPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   +      T +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  QPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKPLDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH + K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K    D + +++A  N     ++   VL   + + + + +I+R  G    +VF  T
Sbjct: 199 RALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDLLSHIIRESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +DG+  V +ATD+AARGID+  L
Sbjct: 259 KHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVLVATDIAARGIDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 319 PHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLV 353


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 14/334 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   T VQ   +   L  +D++V ++TGSGKT  FG+++      E      A
Sbjct: 16  KAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSMLQMTDPE------A 69

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PL L + P RELAVQV  ++    ++L  KT  V     G  +++ E + L+ G  IV
Sbjct: 70  EGPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVY----GQHNINVETQTLKKGVSIV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            GTPGR+ DHI    L   +++ +VLDEAD MLD+GF D +  I+ + PK R  L+FSAT
Sbjct: 126 TGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKDRITLLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  +   Y ++   + I S+ +    I      V  ++++  +  +L     ++ +
Sbjct: 186 MPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLLIVEKPESCM 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+T+A+V R    L +  +   AL G++ Q +R N +Q  + G+  + +ATDVAARGI
Sbjct: 246 IFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILVATDVAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  L LVI+ ++ ++ +N +HR GRTGRAG  G
Sbjct: 306 HIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDG 339


>gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
          Length = 432

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 186/340 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +   L  +
Sbjct: 23  NISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNEQ 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A    AL ++PTRELA+Q+   ++     T +     +GGVS   + R LQ GA
Sbjct: 83  PPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K++ L F
Sbjct: 143 DILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSKKQTLFF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   IT L K   ++ V+V I   +     I     L+   ++   +  +++     
Sbjct: 203 SATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVYLLETGNKQKQLNELMKDPSIV 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  + L +      A+ G  SQ  R  AL+  + G  RV +ATD+AA
Sbjct: 263 SALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETRVLVATDIAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++
Sbjct: 323 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 362


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 196/366 (53%), Gaps = 8/366 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCS 252
             L++ Y      + I +       I++  +  A+ D   +++ ++       + I+FC 
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEH-TLFEAIEDEKFSLLKDVTTIENPDSCIIFCR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ +
Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     
Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIG 370

Query: 373 PSVEAI 378
           PS E +
Sbjct: 371 PSKEEV 376


>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 195/351 (55%), Gaps = 2/351 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFAPEIL-RAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        V V    GGV +  + + L+ 
Sbjct: 65  -DNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ I+ +  K R+ L
Sbjct: 124 GADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +       +++ S+N     +      V    +   +  ++    
Sbjct: 184 LFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSELIGKKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +AT+V
Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRALVATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R
Sbjct: 304 AARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354


>gi|223944961|gb|ACN26564.1| unknown [Zea mays]
          Length = 734

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 327 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 386

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  IV+ T
Sbjct: 387 AEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEIVIAT 446

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 447 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 506

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++   
Sbjct: 507 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 566

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   R+ R
Sbjct: 567 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 626

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQN 351
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG+ S F+  +N
Sbjct: 627 FNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVASSFLTYEN 684


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 193/347 (55%), Gaps = 2/347 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L+E G  + T +Q   +   +  +DV+  AQTG+GKT AFG+ L + ++   
Sbjct: 9   LPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPLLAQMMELE 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P S    L +APTRELA Q+   L      T + VA+ +GG S++ + + L+ G  
Sbjct: 69  GRPEPRSV-RGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQIKRLERGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I +  PK+R+ ++FS
Sbjct: 128 LLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPKERQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y    +R+ ++   +    +      +A +++   +  +L  H  + 
Sbjct: 188 ATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKTELLKELLAKHKGER 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  K L +  F   ++ G  SQ +R  A+   + G   V +ATDVAAR
Sbjct: 248 ALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           G+D+PD++ V + EL + P+N +HR GRT RAG+ G +V F  P  M
Sbjct: 308 GLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEM 354


>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 453

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 189/339 (55%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + GY   T +Q   L   L  +D++  A TGSGKT AF L +   L  +       
Sbjct: 30  EALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQKLWEDPKGL--- 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  +APTRELA Q+ ++ E L +  G   AV +GG+ +  +   L    HIVV TP
Sbjct: 87  ---FACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRPHIVVATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL  H+   KG ++  +K +VLDEAD +LDL F   I+ IL   PK+R   +FSAT++ 
Sbjct: 144 GRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERTTYLFSATMTT 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + VR+ ++S+ +  S +    +L+ L D+D  ++ ++      + I+F 
Sbjct: 204 KVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPLKDKDAYLIYLINSLAQNSIIMFT 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T     R + +L    F  V L G+LSQ +R  AL   + G  RV +ATDVA+RG+D+P
Sbjct: 264 RTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLVATDVASRGLDIP 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 324 SVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQ 362


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 434

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 189/354 (53%), Gaps = 9/354 (2%)

Query: 1   MKIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F NI     I +AL E GY   T VQE ++   L+  DV+ +AQ+G+GKT AF L +
Sbjct: 1   MKTFNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L    D  S     L +L + PTRELA Q+ + +        +   + +GG+S   +
Sbjct: 61  LQKLFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G  ++V TPGRL DHI+ K +N+S +  +VLDEAD ML++GF  DIE I     
Sbjct: 121 IRKINAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCA 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R + MFSATI+  I  LAK +    V + ++S   Q S +D     + L D D  I  
Sbjct: 181 KTRHIGMFSATINQNIKKLAKEFLHKPVVIEVSS---QRSAVDIIEQQIYLMDEDKKIEF 237

Query: 238 ILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +    G++N    +VF +T+A     T+       +   + G++ Q  R+ AL+  +   
Sbjct: 238 LSYLIGSENWEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKS 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            RV +ATD+AARGID+  L  V++ EL     +  HR GRTGRAG  G++  ++
Sbjct: 298 LRVLVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLL 351


>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 424

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 190/344 (55%), Gaps = 5/344 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+   G+   T +Q   L   L   DV+  AQTG+GKT AF +++ +  L E
Sbjct: 50  DLPVPLMRAIHALGFEYCTPIQAEALAKTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 109

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D   P  AP AL +APTRELA+Q+ ++ + L   T + VA  +GG+   ++R  L  
Sbjct: 110 KAPDGQKPG-APRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQLGR 168

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181
              ++V TPGRL D    + ++++  + +VLDEAD ML +GF  D++ I+  +PK  +R+
Sbjct: 169 KVDVLVATPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIVRHTPKAEERQ 228

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT S  I  LA  +  DA  V I       ++ID R  LV+ SD+   +VN+L  
Sbjct: 229 TFLFSATFSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVYLVSDSDKQRLLVNLLNQ 288

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVF + R  V      L +    V  LSG++ Q  R   L   R+G   V +AT
Sbjct: 289 ENMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRNGEVDVLVAT 348

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVA RGI + D+  V++  L  +PE+ +HR GRTGRAG +G+S+
Sbjct: 349 DVAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSI 392


>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
 gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
          Length = 467

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 196/363 (53%), Gaps = 7/363 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E LS  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  R    
Sbjct: 23  ENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L      V V    GGV +  +   L++GAHI+VGT
Sbjct: 81  ----TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAHIIVGT 136

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I+  SP++R+ L+FSAT   
Sbjct: 137 PGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTLLFSATFPE 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I T+A+    + V V +A+ + + +   +   L     R  A+  +L  H  ++A+VFC
Sbjct: 197 QIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQLLLLEHKPESAVVFC 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAARG+D+ 
Sbjct: 257 NTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L+ V +  ++ + E  +HR GRTGRAG KG +          +   L       +  EP
Sbjct: 317 ALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLERDIQSEP 376

Query: 372 APS 374
            PS
Sbjct: 377 LPS 379


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 184/354 (51%), Gaps = 6/354 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L  +DV  SAQTG+GKT AF L +   L A   R     
Sbjct: 147 AVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALPILHKLGAHERRLR--- 203

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA+QV    +     T +   V  GGV   ++R DLQ G  +V  TPG
Sbjct: 204 ---CLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRGVDVVAATPG 260

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    + ++ ++ +VLDE D MLD+GF  D++ I+   P+ R+ L FSAT+ P +
Sbjct: 261 RLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFSATLPPEL 320

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA    +D V + I         I +    V  S + + ++++L     K+ I+F  T
Sbjct: 321 AQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLLSRTEFKSVIIFTRT 380

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R    L      V  +  + +Q+ER  AL+  + G+  V +ATD+AARG+D+  +
Sbjct: 381 KMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDIAARGLDIAGV 440

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             VI+ ++  NPE+ +HR GRTGRA   G +  ++ ++  R A  + R  N  +
Sbjct: 441 SHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIERYINAEI 494


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 201/363 (55%), Gaps = 11/363 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   + +Q   +   L   D++  AQTG+GKT+AFG  + S +   
Sbjct: 10  NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI-ES 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D+ S      AL + PTRELA+QV  EL  +       +    GG  + R+ + L+ G 
Sbjct: 69  SDKIS------ALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S +  +VLDE+DEML++GF DDIE I+ S  K R+ L+F
Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA  Y K+ V+ + I   +     I      V   DR  ++  IL     
Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G     +ATDVA
Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361
           ARGID+ D+  VI+ +L  + E+ +HR GRTGRA ++G++   V P+   M ++ E+  +
Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362

Query: 362 EAN 364
             N
Sbjct: 363 RQN 365


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 194/368 (52%), Gaps = 5/368 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +AL   G+   T +Q   +   L   DVL  AQTG+GKT+AFGL L   LLA+  + 
Sbjct: 12  TLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDALLAQPGKP 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +   AL +APTREL  Q+   L  L   T + V   +GG S++R+   L  G  I+V
Sbjct: 72  LPKTVK-ALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINFLSRGTDILV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  K +++S  + +VLDEAD+MLDLGF   +  I       R+ ++FSAT+
Sbjct: 131 ATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPRQTMLFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  L+  Y  +  RV ++   +    I      +   D+   +  +LR       +V
Sbjct: 191 PKQMEELSAAYLTNPRRVQVSPPGKAADKITQSVHFLGKDDKPRKLREVLRQDLDALTLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  K L    F   ++ G  SQ +R  A++  RDG   V +ATDVAARGID
Sbjct: 251 FSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVS 366
           +P +  V++ +L   P+N +HR GRT RAGR+G ++ F  P   ++ R+ +RL +   + 
Sbjct: 311 IPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQRLMK-IEIP 369

Query: 367 VVWEPAPS 374
           V    AP+
Sbjct: 370 VASGEAPT 377


>gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 483

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 203/369 (55%), Gaps = 6/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E      T VQ+ ++   +  KDVLV++QTG+GKT ++ + +  T+  E +R  
Sbjct: 15  IVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICDTVDWEENR-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL ++PTRELAVQ+  ++  +     +      G   V++++ +L+   H+VVG
Sbjct: 73  ----PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQKTHVVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI+   L ++ ++ +V+DEAD+MLD+GF D +E IL S PK+R   +FSAT+ 
Sbjct: 129 TPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSLFSATMR 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +     ++ I  E      ID   + V   ++   + ++       + ++F
Sbjct: 189 NEIRALAGRHMNAPDQIAIKQETVAADTIDQSVIHVTNKEKLQLLQDVTVVENPDSCLIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+ SV      L +  ++   + G L Q+ER + ++  + G  R  IAT+VAARGID+
Sbjct: 249 CNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIATNVAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LVI+ ++    E+ +HR+GRTGRAG+ G ++  +    +     L R   + +   
Sbjct: 309 DSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELERYTGIIIPLA 368

Query: 371 PAPSVEAIR 379
            APS + ++
Sbjct: 369 KAPSPDEVK 377


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 200/365 (54%), Gaps = 16/365 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P++I  AL+E G ++   +Q   L   L   D++  A+TG+GKT+ FG+ + ++++
Sbjct: 20  FPVHPEII-SALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPMLNSVV 78

Query: 64  AENDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           A  D    A      P ALA+APTRELAVQV  +LE      G+ V    GG +   +  
Sbjct: 79  APGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYEPQVD 138

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D  +   L++S  K VVLDEADEMLDLGF  D+E ++  +P  
Sbjct: 139 ALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSLTPAS 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDID------YRAVLVALSDRD 232
           R+ ++FSAT+  AI TLA+ Y      +  +  EN     +       YRA  +   D+ 
Sbjct: 199 RQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHAL---DKV 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L+       I+F  T+ + ++    L E  F   A+ G+L Q  R  AL+  R+
Sbjct: 256 EMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFRN 315

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G+  V +ATDVAARGID+ ++  VI+ +   + +  LHR GRT RAG  G++V FV   +
Sbjct: 316 GKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDWDD 375

Query: 352 MQRRA 356
           + R A
Sbjct: 376 LHRWA 380


>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 684

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 199/377 (52%), Gaps = 10/377 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G  +L  VQ    +  ++  D++  ++TGSGKT+AFGL +   LL+   R      
Sbjct: 96  LKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKLLS---RSGSRRN 152

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL + PTRELA QV  EL  L  +   V    +GGV  H +   ++ G  IVVGTPGR
Sbjct: 153 PGALILLPTRELATQVSSELSRLSPQLKTVT--IVGGVPYHSQESRIRAGVDIVVGTPGR 210

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D    K L+   ++  VLDEAD ML  GF++ +E IL   P+ R+ +M+SAT    +T
Sbjct: 211 IMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCVMWSATFPKWVT 270

Query: 195 TLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFC 251
           +L K Y KDAV +++      H  + + ++A+ V  + R  A+  IL +Y     ++VF 
Sbjct: 271 SLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEKYASQGQSLVFT 330

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +     L      V AL G+LSQ  R++ +Q  R G  +    TD+AARG+D+ 
Sbjct: 331 ETKHEANEIANGLEG--CNVQALHGDLSQGVRASTMQNFRKGLVKTLACTDIAARGLDIA 388

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           +++LV+H  L ++ EN +HR+GRTGRAG+ G S+        R  + L     +      
Sbjct: 389 NVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENRFKIQFAHAA 448

Query: 372 APSVEAIRERDAQRILQ 388
            P  +  R+   + + +
Sbjct: 449 TPDADDFRDTKVKEVTK 465


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 182/344 (52%), Gaps = 2/344 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L + GY   T +Q   +   ++ +D++  AQTG+GKT AFGL L   LL      +
Sbjct: 13  LAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPLLHRLLDIGHPPA 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL +APTREL  Q+   LE     T V V    GG S+ R+   L  GA ++V 
Sbjct: 73  PRSV-RALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQSERLARGADVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L + H   +VLDEAD+MLD+GF   ++ I    P KR+ L+FSAT+ 
Sbjct: 132 TPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPLKRQTLLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ Y +D V+V +A   +    I          D+   +   L+ H  + A+VF
Sbjct: 192 KLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGVHYTPQGDKARLLEEYLKTHPGEMALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L    F+  ++ G  SQ +R   L   R+G   V +ATDVAARGID+
Sbjct: 252 GRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVLVATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             +  V + ++ + PEN +HR GRT RAG  G +V F  P  M+
Sbjct: 312 SGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEME 355


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 194/365 (53%), Gaps = 10/365 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L  E+ R + A 
Sbjct: 15  AVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLL--EHGR-ARAR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV            + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDSKLLRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    L +S ++ +V+DEAD MLD+GF  DIE +    P  R+ L FSAT+ P I
Sbjct: 132 RLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248
             L   +  + VRV ++      + + +  +LVA    D     +LR       G +N I
Sbjct: 192 QRLVSQFLSNPVRVEVSKPASTAATVTH--MLVASGREDYDKREVLRELIRNCDGLQNGI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   + L +H F  VAL G++ Q  R  AL   R G A + +A+DVAARG+
Sbjct: 250 IFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEATLLVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++     +    + +    +V 
Sbjct: 310 DIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSVTAIEKLIGNAVP 369

Query: 369 WEPAP 373
           W  AP
Sbjct: 370 WHGAP 374


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L+ +DVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 19  KAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS  ++ R L+ G  +++ TP
Sbjct: 76  RMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQDRKLERGVDVLIATP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L +  ++ +V+DEAD MLD+GF  +IE I   +P  R+ L FSAT++P 
Sbjct: 136 GRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPFTRQTLFFSATMAPE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG--AKNAI 248
           IT L K +    V V +   +   S I  R V       D+   +  ++   G   KNAI
Sbjct: 196 ITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLRELIHNEGDKLKNAI 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +  + +A+DVAARG+
Sbjct: 256 IFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNKITLLVASDVAARGL 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+    +   +N  + 
Sbjct: 316 DIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQKYINAIEEISNEKIE 375

Query: 369 W 369
           W
Sbjct: 376 W 376


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/393 (35%), Positives = 217/393 (55%), Gaps = 20/393 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ +A+ E GY   + +Q   +   L  +DV+  A TG+GKT AF L + S +  +  
Sbjct: 18  PSVL-KAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVLSRIDPKLR 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P AL +APTRELA+QV        +K   V  VC+ GG S   + + L  G+ 
Sbjct: 77  R------PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQLQALARGSQ 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+    L +  LK +VLDEADEML +GF++D+E +L S+ + +++ +FS
Sbjct: 131 VIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQDKQVALFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  ++K Y +D V V + +      +I+ R  LVA   + + +  IL       
Sbjct: 191 ATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEQFSA 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F    L+G+++Q  R   +  +R G+  + +ATDVAAR
Sbjct: 251 MIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDILVATDVAAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363
           G+D+  +  V + ++  + E+ +HR GRTGRAGR G+S +FV P  ++M    ER  R+A
Sbjct: 311 GLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGAIERATRQA 370

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
              +   P P+V  +   +A RI +   F DSI
Sbjct: 371 ---LTEAPLPTVADV---NAGRIAK---FRDSI 394


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/389 (34%), Positives = 207/389 (53%), Gaps = 19/389 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+++ GY   T++QE  +   L   DVL  AQTG+GKT AF L +   L +   R  
Sbjct: 13  ILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPMIEKLASGRSR-- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P A+ +APTRELA QV    E       +  A+ IGGVS+  +   L  G  +++ 
Sbjct: 71  -ARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQVAKLDKGVDVLIA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSAT+ 
Sbjct: 130 TPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPPSRQTLFFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNI---ASENRQHSDIDYR-----AVLVALSDRDNAIVNILRYH 242
           P IT L + + K+ VR+ +   A+ N   +   YR     + L+A + R  A+  ++   
Sbjct: 190 PEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAKR-LALRTLIGQL 248

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              N IVFC+ +  V    K L+ H F    + G+L Q  R   L   R G  ++ +A+D
Sbjct: 249 EINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFRSGELKLLVASD 308

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF-- 360
           VAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G +  ++  N ++  +++   
Sbjct: 309 VAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPNDEKNYDKVLKL 368

Query: 361 --REAN---VSVVWEPAPSVEAIRERDAQ 384
             +E N   + V W P       RE+ A+
Sbjct: 369 IKKEPNTLELDVDWSPLADARPEREKPAR 397


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 7/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +   +  +N +     
Sbjct: 3   AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQIQ--- 59

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   EL  L +   V   V  GG  + R+   L+    I+VGTPG
Sbjct: 60  ---ALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P  R+ L+FSAT+   I
Sbjct: 117 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +D   V+IAS+      +D   V     ++ +A+  +      + AIVF  T
Sbjct: 177 KKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L    ++   + G+L Q  R   L+  + G  +  +ATDVAARG+D+  +
Sbjct: 237 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
             V + ++  +PE+ +HR GRTGRAG  G+SV FV+
Sbjct: 297 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVV 332


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 198/370 (53%), Gaps = 6/370 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  I + I + L++ G+   T +Q   +   ++ +DVL  AQTG+GKT AF + L   
Sbjct: 3   FENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPLIDR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E            + + PTRELA+Q+G     L   T V     IGGV    + R L
Sbjct: 63  IHREKSS-KRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQIRKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+G  I++ TPGR+ D I    + +  ++ +VLDEAD MLDLGF +DI+F+     KK +
Sbjct: 122 QDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHKKHQ 181

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            L FSATI+P I  LA +  K  A+R+ I+ E+   +++ +  + V + D+   +   L+
Sbjct: 182 TLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFFLERFLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     IVF  TR    R  + +       + + GE  Q ER++ ++  ++G   + IA
Sbjct: 242 ENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECNLLIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDV+ARGID+PD+  VI+ +L    EN +HR GRTGR   KG+++     + + R + + 
Sbjct: 302 TDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRLQEIQ 361

Query: 360 -FREANVSVV 368
            F    + VV
Sbjct: 362 QFLNKEIEVV 371


>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 462

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 187/346 (54%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  +   L  +D++  A TG+GKT AFGL +        DR +      AL
Sbjct: 20  GFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL-------DRIARGEIERAL 72

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I PTRELA QV  EL  L    G+      GGV   R+   +  G  IVV TPGRL D 
Sbjct: 73  VITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIALIHRGVQIVVATPGRLKDL 132

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
            +   +++ + + VVLDEADEMLD+GF DD+  I +  P+ R+ L+FSAT+   I  LA 
Sbjct: 133 YQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNRQTLLFSATMPDPIKELAD 192

Query: 199 N--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
              Y+ + + V +  E  ++ DI+    ++  + RD AIV +L       A++FC  +  
Sbjct: 193 TLLYEPEFISV-VGEETTKNVDIEQYYYVINENQRDEAIVRLLETENYDKALIFCRMKRE 251

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  + L    F    L G++ Q ER   ++  R G  R+ IATDVAARG+D+ ++  V
Sbjct: 252 VDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILIATDVAARGLDIKNVTHV 311

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
            +  +  +P++ +HR GRTGRAG++G ++ +      R  +R+ +E
Sbjct: 312 FNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRIRKE 357


>gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 482

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 211/392 (53%), Gaps = 18/392 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           VI +A+    Y  LT VQ+ +L   L  KD++V + TGSGKT AF + +   +  + +  
Sbjct: 14  VINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPICEQVTWDEN-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               +P AL + PTRELA QV  E   +     +      G     R++ +L+   H+VV
Sbjct: 72  ----SPQALVLTPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQKTHVVV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSAT 188
           GTPGRL DH++   L ++ +K +V+DEADEM + GF D ++ IL       ++  ++SAT
Sbjct: 128 GTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIYSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           IS A+  ++  +  + +++NI  +      I    VLV  + + +AI ++       + I
Sbjct: 188 ISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPDSCI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+ +V +  K L +  +    + G L Q+ER + +   ++G+ R  + T++AARGI
Sbjct: 248 VFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER-LFREANVS 366
           D+  + LVI+ ++  + E  +HR+GRTGRAG KG ++ F+ P       ER LFRE    
Sbjct: 308 DIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPD------ERILFREIEDY 361

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           + +   P +    ER+ +R+   P F D ++ 
Sbjct: 362 IGYA-IPPMNIPSEREVERL--KPAFEDKMRN 390


>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 520

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +AL++ G +    +QE  +   L  +D++  A+TG+GKT  FGL L   L   
Sbjct: 7   NIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLIQRL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P     AL + PTRELAVQV  +L+         V    GG +   +   L+ GA
Sbjct: 64  --GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLKAGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +  + L++ +++ +VLDEAD+MLDLGF  DIE +   +P  R  ++F
Sbjct: 122 QIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHTMLF 181

Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I  LA+ +      +R     E    ++I +        D+D  I  IL+  G
Sbjct: 182 SATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQAEG 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ + +R  + L +  F   A+ G+L+Q++R  A+   + G+  + IATDV
Sbjct: 242 RGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+  +  + +  LHR GRTGRAG+ G++V  +
Sbjct: 302 AARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFV 346


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 13/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L+ +DVL  AQTG+GKT +F L + S L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPMLSLLSRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY------ 241
           T++P I  +   +  +  RV +A +      I+   V+   + R+NA     R       
Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEKRRLLRALID 246

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  NAI+FC+ +  V   +K L ++ +    + G+L Q +R+  L   R G  R  
Sbjct: 247 REGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDGFRAGTLRFL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +
Sbjct: 307 IASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMI 355


>gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 466

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/394 (35%), Positives = 213/394 (54%), Gaps = 28/394 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------- 63
           I  A+SERGY   T +Q   +   L+  D++  AQTG+GKT  F L L   L+       
Sbjct: 12  IARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLLQRLMEKPISGQ 71

Query: 64  ------------AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI- 109
                        E ++ S   AP+ AL + PTRELA QV  E   LY K   + ++ + 
Sbjct: 72  PSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQV-EESVRLYGKYLPLKSMMMF 130

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGV+++ + + L     I+V TPGRL DH++ K +++SH++ +VLDEAD MLD+GF  DI
Sbjct: 131 GGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADRMLDMGFIRDI 190

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + +L   PK+R+ L+FSAT S  I  LA     +   + +A  N+ +  I+ R   V   
Sbjct: 191 KRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELIEQRVYPVDRE 250

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + N + ++++ H     +VF  T+   +     L +     +A+ G  SQ  R+ AL  
Sbjct: 251 RKRNLLTHLIKDHNWFQVLVFTRTKHGANNLADHLNKEGIPAMAIHGNKSQAARTRALAE 310

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VF 346
            +  + +V +ATD+AARGID+ +L  V++ EL + PE+ +HR GRTGRAG +G +   V 
Sbjct: 311 FKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTGRAGSEGEASSLVC 370

Query: 347 VIPQNMQRRAERLF-REANVSVV--WEPAPSVEA 377
           +  + +    ERL  RE  V  V  +EP P ++A
Sbjct: 371 IDEKKLLHDIERLIKREIPVVQVPGFEPDPRIKA 404


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|315297174|gb|EFU56454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
          Length = 432

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +TSVQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F        L + P
Sbjct: 1   MTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ----GLVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 544

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 38/390 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63
           AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L                 
Sbjct: 50  ALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 109

Query: 64  --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                       R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 110 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 163

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF DD
Sbjct: 164 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDD 223

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           I+ I+  +P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I      V  
Sbjct: 224 IDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQTVHYVDD 283

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 284 RDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 343

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 344 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 403

Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP 371
           +    Q   +R ER  R     NV   +EP
Sbjct: 404 VHHAEQGALKRIERFVRTPLPVNVVEGFEP 433


>gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 377

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 8/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK F++  I + + + L E G    T++Q+  +   L  + D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFQDLGISEALVQGLEELGITKPTAIQQQTIPHVLAHRGDLIAQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVH 115
           +   ++    + + A     L +APTRELA Q+G++L     +    + V    GG  + 
Sbjct: 61  MLERIIPHAAK-AKAGQIDGLIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMD 119

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+   HIVVGTPGRL D ++ + LN+S ++ +VLDEADEML LGF+ ++E     
Sbjct: 120 LQISRLRRPTHIVVGTPGRLMDLVQREALNLSKVRYLVLDEADEMLSLGFKKELEQFFQL 179

Query: 176 SPKKRR-MLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           + K R+   +FSATI   I  L + Y + +A R+ I   +  + DI +R ++   +++ +
Sbjct: 180 TAKSRKNTWLFSATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYIICDRTEKLD 239

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I   L        ++FC T A      K L    F V  L G+LSQ ER   ++  +  
Sbjct: 240 RISEFLEDRSEDRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKE 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R +  + TDV+ARGID+  L  VIH +L    E   HRSGRTGRAGRKG+S+  I    +
Sbjct: 300 RLQYLVTTDVSARGIDVVGLAFVIHHQLPEQTEYYTHRSGRTGRAGRKGLSLAFIEPKEK 359

Query: 354 RRAERLFREANV 365
               RL  E  V
Sbjct: 360 SAITRLENELGV 371


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 193/365 (52%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
 gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
          Length = 480

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I ++L E G+   T +QEA+L      KD++  AQTG+GKT AF + + S L   
Sbjct: 7   NIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSNLDCS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L IAPTRELA Q+  +L  L   T   +A+ +GGVS  +++  L +G 
Sbjct: 67  INRIQ------HLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +IVV TPGRL D +    +++SH+K   LDEADE+L +GF ++I  I++  PKKR+   F
Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT       L++    +A  ++++S       ID   V+V+  ++   +V  L +    
Sbjct: 181 TATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPT 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+  V      L E  F  V + G++ Q++R++ L   +D +  + +ATDV A
Sbjct: 241 ASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  ++LV + +L    E   HR GRTGR  R G ++
Sbjct: 301 RGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAI 340


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 26  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 79  QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 162/520 (31%), Positives = 256/520 (49%), Gaps = 37/520 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  + + +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFGL L   
Sbjct: 7   FKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPLLQR 66

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + A +          AL + PTRELA+QV   L  L     GV +    GG  +  +   
Sbjct: 67  IDAADRSVQ------ALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VVGTPGR+ DHI    L +  ++  VLDEADEMLD+GFR+DIE IL   P+  
Sbjct: 121 LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +   FSAT+   I  LA+ + ++   + +       ++ +     V    R +A+  I  
Sbjct: 181 QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  + AIVF +T+  V      L +      AL G+L+Q +R   +   R G   V +A
Sbjct: 241 AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D++ VI+ +L ++PE  +HR GRTGRAGR G +          +   + 
Sbjct: 301 TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ 360

Query: 361 REANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAK-HDPEKIA 417
           R     +     P+  +A R R  Q + +    L S +      +V+ L+A+  DP ++A
Sbjct: 361 RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA 420

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGS 475
           A  LR                ++  RDR         + G  + +  G+    L  +VG 
Sbjct: 421 ATLLR----------------MIMQRDR-------IDLPGARQTDDIGTGRVRLFFNVGR 457

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           + +   R L+  +   +GI+ +SIG+I +    +FVEV A
Sbjct: 458 RMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDA 497


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 182 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|121606431|ref|YP_983760.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
 gi|120595400|gb|ABM38839.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
          Length = 467

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 204/345 (59%), Gaps = 12/345 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L++ GY ++T +Q A L   L  KD++  A+TGSGKT AF LAL + L A 
Sbjct: 12  SLPAHVLANLTQLGYTSMTPIQAAALPVALLGKDLIAQAKTGSGKTAAFALALLANLNAR 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             RF    A  A+ + PTRELA QV  E+  L  A+  + V    GGV++  +   L++G
Sbjct: 72  --RF----AIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRNQIASLEHG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L+++ +  +VLDEAD MLD+GF DDI  +    PK+R+ L+
Sbjct: 126 AHIVVGTPGRIMDHLGRGNLDLAAMNTLVLDEADRMLDMGFFDDIATVAKQCPKERQTLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILR 240
           FSAT    I  +++ + K+   V + +++ + S I  R   V  +D D    +A+  +L 
Sbjct: 186 FSATYPEGIAKISQQFMKNPQTVTVQAQH-EKSKIRQRWYQVEDTDHDEARLDAVARVLN 244

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + + FC+T++      ++L +  F  +AL GEL Q+ER   L    +    V +A
Sbjct: 245 HYRPVSTLAFCNTKSQCRALVQLLKDKGFIALALYGELEQRERDQVLVQFANRSCSVLVA 304

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+  LE+VI+ +++ + E  +HR GRTGRA  +G ++
Sbjct: 305 TDVAARGLDISQLEMVINVDVTPDSEIHIHRIGRTGRADEEGWAI 349


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 199/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P+ R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 3/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY + T +Q   +   L  KD+L  AQTG+GKT AF + +   L A 
Sbjct: 7   NITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQAG 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R     A   L + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 67  KERDKSIKA---LILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +  ++  VLDEAD MLD+GF  DI+ +L   PK+++ L F
Sbjct: 124 DILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K  V++ I  ++     I+     V   ++   +++IL     +
Sbjct: 184 SATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKEKSKLLISILHKAEGQ 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL++      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQ 348


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/325 (35%), Positives = 183/325 (56%), Gaps = 6/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+A++   + EKDVL  AQTGSGKT+AFGL L +++  + +         A+ I PT
Sbjct: 24  TEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLLNSIKHDVNELQ------AIIIVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV + LE +     +      GGV +  +++ L     +V+ TPGRL   I+   
Sbjct: 78  RELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVIQENK 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L ++  K+++LDEAD +LD+GF  D++ I+ + PKK + L+FSAT+   + +  +    +
Sbjct: 138 LELTQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEALLVN 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V+V    EN   + I+    LV    +  A++ +L  H     +VF   + +    TK 
Sbjct: 198 PVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADALTKR 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L++    V AL G  SQ+ER  AL+  ++G+ RV IATDV ARGI +  L +VI+ +L S
Sbjct: 258 LSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINFDLPS 317

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    +HR GRT RAG  G ++ ++
Sbjct: 318 HSATYVHRVGRTARAGSTGSAISLV 342


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp.
           HTCC2170]
 gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maribacter sp. HTCC2170]
          Length = 603

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 197/347 (56%), Gaps = 14/347 (4%)

Query: 14  ALSERGYVNLTSVQEA---ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           A+++ G+   + VQE    IL  D  E D++  AQTG+GKT AFG  L   + +E     
Sbjct: 16  AVADMGFETPSEVQEKAIPILLED--ETDLVALAQTGTGKTAAFGFPLIQKIDSE----- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +     L ++PTREL +Q+  EL+    Y K+  VVA+  GG S+  + R ++ GA IV
Sbjct: 69  -SRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAI-YGGASITEQARQIKRGAQIV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D I    +NI+ +   +LDEADEML++GF +DI+ IL ++P ++   +FSAT
Sbjct: 127 VATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKSTWLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   ++ +AK +      + +  +N   + + +   +V   DR  A+  +   +    ++
Sbjct: 187 MPREVSVIAKKFMHSPKEITVGDKNSGATTVQHEYYVVGGRDRYPALKRLADTNPDIFSV 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+    R  + L E  +   AL G+LSQ +R   +   R  + ++ +ATDVAARGI
Sbjct: 247 VFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATDVAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+
Sbjct: 307 DVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRK 353


>gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 417

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 192/340 (56%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY + T +QE ++   L + D+L  AQTGSGK+ +F L +    L    R  
Sbjct: 12  IVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPILH--LWSLSRSE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTREL +QV +  E +  +      V   IGG S+  +   +Q G  I+
Sbjct: 70  GKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLYAIQQGCDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GR  D ++ K +N+SHL+  VLDEAD+MLDLGF +++E ILD+ P+KR+ L+FSAT
Sbjct: 130 VATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQKRQNLLFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             P + ++A     + + V + +E     +I  R + V   +R   + ++L     +  +
Sbjct: 190 YPPKMESIASKITPNPIHVTLEAEMPTVQNIHQRVIEVNPENRGPLLRHLLNTEKWEQVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + + +         ++ F   + +G+L Q++R+  L+  +  + R+  ATD+AARG+
Sbjct: 250 VFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIRILFATDIAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V++ +L  +P + +HR GRTGRAG+ G+++  I
Sbjct: 310 DIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFI 349


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 188/337 (55%), Gaps = 11/337 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAENDRFS 70
           + E G+ + T VQ A L   L+  DV   AQTG+GK+ AF LA    L +T +AEN    
Sbjct: 24  IKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYLMTTPVAENK--- 80

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL +APTRELA+Q+ R+ E L   TG+  A   GG+    +R +L  G  I++G
Sbjct: 81  --TGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGVDIIIG 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           TPGR+ D  + +  ++ +++ VVLDEAD M D+GF  D+ ++L   P    R  ++FSAT
Sbjct: 139 TPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LA  +      + I  E      +      VA +D+   ++ +LR   A   +
Sbjct: 199 LSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLYHVASADKIGLLLGVLRQQDATRTL 258

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+    R T  L  + F    +SG++ Q++R   LQ  ++G+  + +ATDVAARG+
Sbjct: 259 VFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVATDVAARGL 318

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +PD+  +++ +L  N E+ +HR GRT RAG  G ++
Sbjct: 319 HIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAI 355


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 203/360 (56%), Gaps = 17/360 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           EA+  +G+   T +Q  ++   L  E D++  +QTG+GKT AF L +   +        P
Sbjct: 25  EAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPIIEAI-------DP 77

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               + A+ + PTRELA+QV  E++ L  K  V V    GG  +  + R L+ G H+VVG
Sbjct: 78  NEKTVQAIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIRALERGVHVVVG 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L++S ++  VLDEAD MLD+GF DDIE I+  +P+++R+LMFSAT+ 
Sbjct: 138 TPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQEKRILMFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAI 248
             I  LAK Y ++   + ++ +      +D   V V  + +   +  +L   ++G    I
Sbjct: 198 MGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLPARKYEKLKEVLGEGFYG----I 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+      ++ L    F+  AL+G++SQ  R       ++G+  V +ATDVAARG+
Sbjct: 254 IFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVLVATDVAARGL 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
           D+ ++  VI+  L  N E  +HR GRTGR G++G ++ F+ P  + R  + + R+A V V
Sbjct: 314 DVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRD-IARKAKVEV 372


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 26  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 79  QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360


>gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays]
          Length = 736

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 192/358 (53%), Gaps = 20/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S  T L      + 
Sbjct: 329 AIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENE 388

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  IV+ T
Sbjct: 389 AEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEIVIAT 448

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P              
Sbjct: 449 PGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELD 508

Query: 180 -----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++   
Sbjct: 509 EKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESEKMPR 568

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   R+ R
Sbjct: 569 LQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGFRNRR 628

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++  F+  +N
Sbjct: 629 FNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVATSFLTYEN 686


>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 559

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 194/339 (57%), Gaps = 19/339 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G    T VQ+  +   +  KDV+  A+TG+GKT+AF L +   +        P  A
Sbjct: 17  LKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPILQQI-------DPKRA 69

Query: 75  -PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P AL IAPTRELA+Q+  E + L A    G+ +    GG  V ++ R L+ G H+++GT
Sbjct: 70  YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRHLIIGT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L +  +K +VLDEAD+ML +GF DD+E ++ + P +R+ ++FSAT+  
Sbjct: 130 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHALPYRRQTMLFSATMPA 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDR--DNAIVNILRYHGAKN 246
            +  LA NY    V + I    +  S I     + V+V  +DR   +A+  ++  +    
Sbjct: 190 GVKQLAGNYMNQPVDIVI----KGASPIPLEQIQQVVVECTDRSKQDALRTMIEQYNPFL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+   S     L  H +Q   L G+LSQ +R   ++  RD + ++ +ATDVAAR
Sbjct: 246 AIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKLQLLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  +  V + ++  + E+ +HR GRTGRAG  GM++
Sbjct: 306 GLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAI 344


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 26  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 79  QGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 139 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 198

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 199 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 259 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 319 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 360


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 191/336 (56%), Gaps = 7/336 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASA 74
           + R +V  + +Q       L  +D++  A TGSGKT+ FGL +   + A+ +        
Sbjct: 4   ATRNFVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKG 63

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA+Q+   LE   +K GV      GGV  H + + L++G  +VVGTPGR
Sbjct: 64  PFAVVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGR 123

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L ++ +   VLDEAD MLDLGF   I  I++ +   R+ LMFSAT   A+ 
Sbjct: 124 MEDLLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQ 183

Query: 195 TLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNIL-RYHGAKN----AI 248
            LA  +    V+V I S++   S  I     ++    RD  ++++L +YHGAK      I
Sbjct: 184 KLAVAFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVI 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +    R  ++L    ++  A+ G++SQQ+R++A++  + G   + IATDVAARG+
Sbjct: 244 IFVLYKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGL 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+PD+E+VI+       E+ +HR GRTGRAG+ G++
Sbjct: 304 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGVA 339


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 484

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL  +GY   T +QE  + P L  +D+L  AQTG+GKT AF L     L   ++R
Sbjct: 11  QPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDRLREADNR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P  +   L +APTREL  Q+    +   A  G+ V   +GG SV+++R  L  G  I+
Sbjct: 71  I-PFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLHRGTDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I  K  N+  ++ +VLDEAD+MLDLGF   +  I    PK+R+ L FSAT
Sbjct: 130 IATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQTLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGA 244
           +  AI  L   Y  + V+V++  E+     ID    +V   ++ + +  IL    +  G 
Sbjct: 190 MPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELILSGRHKVPGE 249

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+    R  K L+       A+ G  SQ +R  AL   R G+  + +ATDV
Sbjct: 250 FERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKTMILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  V++ EL + PE  +HR GRT RAG+ G+++
Sbjct: 310 AARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAI 351


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 185/340 (54%), Gaps = 17/340 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY+  T +Q   L   +  +D++ SAQTGSGKT AF L     +   +D+     
Sbjct: 17  ALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLPSLQRITRRSDK--SGK 74

Query: 74  APLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P  L + PTRELA QV        + ++WL   T       +GG S   + + L     
Sbjct: 75  GPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVT------LVGGSSFGFQIKALAKPID 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ ++P+ R+ L+FS
Sbjct: 129 LVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPESRQTLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAK 245
           AT   A+  LA+   K+   + I  E+ Q   ID +       +  N +++ ILR     
Sbjct: 189 ATWDGAVGKLARRLTKNPEVIEIEREDNQ-GKIDEQLFYCDDKNHKNRLLDHILRDANID 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F ST+A   +    L E  F    L G++ Q  R+  L  +R GR +V +ATDVAA
Sbjct: 248 QCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIKVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 308 RGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLAL 347


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 196/346 (56%), Gaps = 11/346 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +RG+   + +QE  +   L  KDVL +AQTG+GKT  FGL +   L++   + S A
Sbjct: 14  KAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQRLMS-GPKVS-A 71

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +   AL + PTRELA QV   +    E+L  KT    AV  GGV ++ +   L+ G  ++
Sbjct: 72  NNVRALILTPTRELAAQVEESICAFSEFLPLKT----AVVFGGVGINPQMIKLRKGVDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ +L   P+ R+ L+FSAT
Sbjct: 128 IATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQSLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  ITTLAK   ++ V ++ A  N     ++   V +  S +  A++ +++    +  +
Sbjct: 188 FSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQQKWEQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L        A+ G  SQ  R+ AL   ++G  +V +ATD+AARGI
Sbjct: 248 VFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+ +L +V++ +L +   + +HR GRTGRAG  G +  FV  + +Q
Sbjct: 308 DISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQ 353


>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 526

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 197/345 (57%), Gaps = 8/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L E G+   T +Q+  +   L+ +D++  AQTG+GKT AFGL +   L  +
Sbjct: 7   NLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPMLQGLDTD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
           +       A  AL IAPTRELA+QV  EL  L       V    GG S+ ++   +Q   
Sbjct: 67  H------RALQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQKLK 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGRL D +R + ++ S+LK +++DEADEML++GF +DI+ I++ +P  R+ LM
Sbjct: 121 PQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSRQTLM 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  ++  LA+ +      V I +++     ID   V    S++ + +  +L     
Sbjct: 181 FSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVKCRDSEKFDILTRMLDIESP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+  V    + L+   +    + G+++QQ+R+  +   + GR  + +ATDVA
Sbjct: 241 DKAIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELLVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
           ARGID+  +  V + ++  +PE+ +HR GRTGRAG +G SV FV+
Sbjct: 301 ARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVM 345


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 11/367 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  I + I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +   
Sbjct: 3   FKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPILQQ 62

Query: 62  LLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           +  +   NDR     A   L + PTRELA+Q+G         TG+   V  GGV   ++ 
Sbjct: 63  IHNDRQSNDRHRKIKA---LVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+NG  I++ TPGRL D +    +++  ++  VLDEAD+MLD+GF  DI  I+   P 
Sbjct: 120 QALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPP 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  L++    D  RV I  E      ++     V  S++   +V++
Sbjct: 180 KRQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + +VF  T+   ++  K L +      A+ G  SQ  R  AL   + G  +V 
Sbjct: 240 LENRPNSSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           IATD+AARGID+ DL LV++ +L + PE  +HR GRTGRA   G+++    ++ Q   R 
Sbjct: 300 IATDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYLRD 359

Query: 356 AERLFRE 362
            E+L ++
Sbjct: 360 IEKLIKQ 366


>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 538

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 194/336 (57%), Gaps = 13/336 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G    T VQ+  +   L+ KDV+  A+TG+GKT+AF L +   +        P  A
Sbjct: 27  LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHI-------DPKRA 79

Query: 75  -PLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P AL IAPTRELA+Q+  E + L A    G+ +    GG  V ++ R L+ G  +++GT
Sbjct: 80  YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGT 139

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L +  +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+  
Sbjct: 140 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPA 199

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LA NY    V + I   +    +   + V+V  +DR   +A+  ++  H    AI+
Sbjct: 200 GVKQLAGNYMNQPVDIVIKGASPIPLE-QIQQVVVECTDRSKQDALRAMIEEHNPFLAII 258

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   +   + L  H +Q   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D
Sbjct: 259 FCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLD 318

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + ++  + E+ +HR GRTGRAG  GM++
Sbjct: 319 VEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAI 354


>gi|221123566|ref|XP_002167654.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 685

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 198/339 (58%), Gaps = 12/339 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G      VQ    N      DV+V A+TG+GKT+AF L +   L +EN        
Sbjct: 71  LNANGIKAFFPVQSTTYNAIFEGSDVIVQARTGTGKTLAFTLPVIERLNSEN-LTERGRV 129

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PL LA+APTRELA+Q+ +E+E  +    V V+   GG S  ++  +L+ G   +VGTPGR
Sbjct: 130 PLVLALAPTRELAMQIYQEVE-KFKPNNVQVSCFYGGSSYEKQEGELRRGVDFLVGTPGR 188

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSATISP 191
           + D I+   L+++ LK V+LDEAD M+D+GF+DD+E IL    +S +K + L+FSAT+ P
Sbjct: 189 IADLIQRGVLDLTKLKHVILDEADRMMDMGFQDDVEKILKHSYTSARKPQTLLFSATVPP 248

Query: 192 AITTLAKNYQKDAVRV-NIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--N 246
            +   +K Y    ++V ++  E  N+  + + ++ +  +  +R   I +I++ +  K   
Sbjct: 249 WLQQNSKKYLSSNLKVFDLIGEDKNKGATTVQHKVIKCSYWERPLLIKDIMQLYSGKFGK 308

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F +T+   +  +  +   +     L G++SQ +R   LQ  R+G+    IATDVAAR
Sbjct: 309 TIIFTTTKQEANELS--VESSIPDSQVLHGDISQSQREITLQGFRNGKFNCLIATDVAAR 366

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+P+++LVI  E  ++ +  +HR+GRTGRAGR G+ V
Sbjct: 367 GLDIPEVDLVIQTEPPNDIDFYIHRAGRTGRAGRSGVCV 405


>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 437

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPA 72
           ++++GY   T++Q   +   L  +D++ SAQTG+GKT AF L L   L+  + +D  S A
Sbjct: 40  VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQV   +      T V   V  GGVS+  +   L  G  ++V TP
Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   LN+S ++ +V DEAD MLD+GF D+I  IL   P KR+ L+FSAT S A
Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K   +  +R+ +   N   + I+     V    +   + +++     +  +VF  
Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSR 279

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +     + +     +  A  G+L Q  R   L   + G+ +  +ATDVAARG+D+ +
Sbjct: 280 KKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVE 339

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L++V++ E+    E+ +HR GRTGRAG  G ++ +  ++
Sbjct: 340 LKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSED 378


>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
          Length = 468

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/356 (36%), Positives = 205/356 (57%), Gaps = 12/356 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L+L + 
Sbjct: 13  FSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLNN 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
           L     + S   A  AL + PTRELA QV + +  L      V  + + GG+ +  +   
Sbjct: 73  L-----KIS-FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLDS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+R
Sbjct: 127 LRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT    I  L+K + K+   V + +      DI+     V    +   ++ ++L
Sbjct: 187 QTLLFSATYPEEIKQLSKQFMKNPKEVYVETP-LDEIDIEQHFYEVTKQTQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQR 361


>gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 414

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 196/374 (52%), Gaps = 6/374 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+ +        
Sbjct: 19  AIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQQKPEARKPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISALRKPLDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    +   V++   N     +     +V    + + I +I+R  G    +VF  T
Sbjct: 199 RTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +D    V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367
             V++ EL + PE+ +HR GRTGRAG  G +V ++  +   + +  ERL +   E     
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVE 378

Query: 368 VWEPAPSVEAIRER 381
            W P+P+  A  ER
Sbjct: 379 GWTPSPTSAAAFER 392


>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 504

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 7/333 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   + +Q+ ++   L   DV+  AQTG+GKT AF L L + L   N      
Sbjct: 25  DGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVNGL-KHNGSIE-- 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL IAPTREL +Q+G E+  L     V      GG  + R+   L     IV+ TP
Sbjct: 82  ----ALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKKPQIVIATP 137

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L     + VVLDE+DEMLD+GF DDIE I    P +R+ L+FSAT+   
Sbjct: 138 GRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLLFSATMPTP 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    +   V I   +  + DI  R  ++   +R++AIV ++       AI+F  
Sbjct: 198 IKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPTKAIIFTR 257

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +       + L +  ++  AL G++ Q+ER  +++  +D    + +ATD+AARG+D+  
Sbjct: 258 MKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVATDIAARGLDISG 317

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V +  +  NPE+ +HR GRTGRAG+KG+++
Sbjct: 318 VSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAI 350


>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
 gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
          Length = 383

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 202/346 (58%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +LN  L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
             +  R+   +   AL +APTRELA+Q+  + + L   T + +   +GGV   ++++ L 
Sbjct: 69  PIKEQRYRGEAR--ALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQLD 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           QN   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 QNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   +  IL
Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQEIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    +  ++F + R  V R    L +  ++VV LSGE++Q +R   L   ++G+  + I
Sbjct: 247 RDEPIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI + ++  VI+  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378]
          Length = 435

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 20/355 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  +QTGSGKT AF + +A  ++ E ++      P AL I PTRELA+QV  E   +
Sbjct: 2   EDIVAKSQTGSGKTAAFAIPIAEQVVWEENK------PQALIIVPTRELAMQVKTECTNI 55

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +  A   G     +++ +L    HIVVGTPGRL DHI    LN+  +  +VLDE 
Sbjct: 56  GRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEV 115

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DEML +GF D +E IL   PK+R+ L FSAT+   +  L K YQ + + + +ASE  + +
Sbjct: 116 DEMLSMGFIDQVEDILSRLPKQRQNLFFSATLPEEMQDLIKRYQDNPMVIEMASE--KTN 173

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            I +  V +   +++  + ++L      +AI+FC+T+  V   T +L     +   + G 
Sbjct: 174 PIFH--VEMQTDNKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLD---VKASKIHGG 228

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q++R  A+   + G++R  IATDVA RGID+ ++ LVI+ +L    EN +HR GRTGR
Sbjct: 229 LRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGR 288

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV-------EAIRERDAQR 385
           AG+ G ++  +  N       +    N+++  +  P++       EA R++  +R
Sbjct: 289 AGKSGKAISFVKTNENPLLRDIEEMLNITIEKKRKPTIIEVKANEEAFRKKQQKR 343


>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
 gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
          Length = 454

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 186/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4]
 gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 458

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 10  PELL-ENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 69  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+FS
Sbjct: 123 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     ++
Sbjct: 183 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAAR
Sbjct: 243 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 303 GLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 191/335 (57%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE+ Y   T +Q   +   L   D++  AQTG+GKT AF L +   + A   R +P  
Sbjct: 16  AISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAP-R 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL +APTRELA Q+          T   VAV IGG     + R +++G  ++V TPG
Sbjct: 75  ACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRMESGVDLLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    + +  ++ VVLDEAD+MLDLGF   I  I+   P++R+ +MFSAT+   I
Sbjct: 135 RLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  + +D   V ++ E++    ID + +L+A  ++ + +  +L     + AIVF  T
Sbjct: 195 RALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVERAIVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    + T+ L +      A+ G  SQ +R  AL   R GR RV +ATD+AARGID+ ++
Sbjct: 255 KHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRT RAG +G+++ ++
Sbjct: 315 SHVVNFELPNVPESYVHRIGRTARAGAEGVAISLV 349


>gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 633

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 201/349 (57%), Gaps = 12/349 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +A+++ G+   + VQE  + P L   + D++  AQTG+GKT AFG  L   + A+   
Sbjct: 13  ILDAITDMGFETPSDVQEKAI-PILLGDDTDLVALAQTGTGKTAAFGFPLIQKIDAD--- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +     L ++PTREL +Q+  E++    Y K   VVA+  GG S+  + R ++ GA 
Sbjct: 69  ---SRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIY-GGASITDQARQIKRGAQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D +    ++IS +   +LDEADEML++GF +DI+ IL  +PK++   +FS
Sbjct: 125 IIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDTPKEKSTWLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + T+AK + +    + + ++N   S + +   +V+  DR  A+  +   +    
Sbjct: 185 ATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGRDRYPALKRLADTNPDIF 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++FC T+    +  + L E  +   AL G+LSQ +R   +   R  + ++ +ATDVAAR
Sbjct: 245 SVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQILVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           GID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ +I ++  R+
Sbjct: 305 GIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRK 353


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|256789946|ref|ZP_05528377.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289773828|ref|ZP_06533206.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289704027|gb|EFD71456.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
          Length = 439

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+ E ++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL   L   
Sbjct: 13  GLPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLAL---LAGT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL +  TRELA QV   L       GV +   +GG+S++R+ + L++GA
Sbjct: 70  AGRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +  +  +++ ++  VLDEAD+M DLGF   +  ILD  P   + L+F
Sbjct: 130 EVVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L +++    V V++   +   S +++  + V  +D+      I    G  
Sbjct: 190 SATLDGDVDQLVRDHLHAPVPVSVDPASASVSTMEHHVLTVHPADKYATATEIAARDG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+A V RFT+ L        AL    SQ +R++ L    +G   V +AT+VAA
Sbjct: 248 RVLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAGR G  V ++  + +R   R+  EA +
Sbjct: 308 RGIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGI 367

Query: 366 SVVWEPAPSVE 376
                P  S E
Sbjct: 368 RPTVTPVRSGE 378


>gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 549

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 190/334 (56%), Gaps = 7/334 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY  LT +QE  +   L  KD++  AQTG+GKTVAF + +  T+L +N       
Sbjct: 15  AIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVVHTILTKN-----IQ 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTREL +Q+  E + L   +  + AV  IGG     + +DL+    I+V TP
Sbjct: 70  KVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQNKDLEGLNGIIVATP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++   ++IS+++  VLDEAD MLD+GF  DI ++L     +++ L+FSAT+S  
Sbjct: 130 GRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTLLFSATLSVE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  LA  +  + V + I  E      ID + V +   ++   + N I+        I+F 
Sbjct: 190 VMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIVNSKDEGQGIIFT 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A++ +    L ++   +  +S EL Q++R   L+  + G+ R  +ATDVA+RGID+ 
Sbjct: 250 NYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRYMVATDVASRGIDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++++V + +L  + EN +HR GRT RAGR G ++
Sbjct: 310 NIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAI 343


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247
           I  LA  +  +  RV +A      + I+ R  LVA     +    +LR+        +N 
Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R
Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247
           I  LA  +  +  RV +A      + I+ R  LVA     +    +LR+        +N 
Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R
Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
 gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
          Length = 510

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 3/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +AL E+GY+N T +QE  +   L  +DVL  AQTG+GKT +F L +   L     R
Sbjct: 35  EPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSRAR 94

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P +L + PTRELA+QV            +  A+ IGG S+  +R  L  G  ++
Sbjct: 95  ---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVL 151

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D     GL +S ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT
Sbjct: 152 IATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSAT 211

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++P I  LA  +  +  ++ ++      + I     LVA  D+  A+  ++R    +NA+
Sbjct: 212 MAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNAL 271

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V    K L  H F    L G++ Q  R   L+  + G  R+ + +DVAARGI
Sbjct: 272 VFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGI 331

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  L  V + ++  + E+ +HR GRTGRAG +G ++
Sbjct: 332 DIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRAL 368


>gi|218678587|ref|ZP_03526484.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894]
          Length = 158

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 119/158 (75%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEAD
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEAD 158


>gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 416

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/338 (37%), Positives = 184/338 (54%), Gaps = 7/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68
           + + L+E GY   T VQ + +   L  +D++  AQTG+GKT AF L L   LL    ND 
Sbjct: 15  LQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQNPTNDA 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P  A   L + PTRELA+QV   +      T +   +  GGVS+  +   L+ G  I+
Sbjct: 75  PRPIRA---LVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALKAGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+R   L+++ L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FSAT
Sbjct: 132 IATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQTLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
               +  L+K    D   + +A  N   ++++ R   V   DR  A+V ++L   G   A
Sbjct: 192 CDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVD-GDRKLALVEHMLNVKGWAPA 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAARG
Sbjct: 251 LIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  VI+ E     E+ +HR GRTGRAG KG+++
Sbjct: 311 LDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAI 348


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 150/520 (28%), Positives = 251/520 (48%), Gaps = 39/520 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   + +Q   +   +   D++  AQTG+GKTVAFG  + S +   +++    
Sbjct: 17  KAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPIISKIKDIDEK---- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ + PTRELA+Q+  EL  L     V V    GG S+ R+ R ++ G  ++V TP
Sbjct: 73  EGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMRAIKRGVDVIVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI+ K + +  +K +VLDEADEMLD+GF DDIE I+ +    R+ ++FSAT+   
Sbjct: 133 GRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGDRQTMLFSATMPAP 192

Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  LA NY K  V+ + I   +     I      V   D+  A+  I+     +  I+FC
Sbjct: 193 IKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRIIDVEEPETTIIFC 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + +    + V  + G++SQ +R N L+  ++      +ATDVAARGID+ 
Sbjct: 253 RTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFLVATDVAARGIDVH 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
           ++  VI+ ++  + E+ +HR GRTGRA  +G++   V P+   M ++ E+  +     + 
Sbjct: 313 NVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQIEKFTKS---KIR 369

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFLRIH 424
            +  P+++ I E      L D +   +I+ D+ K     + K D E     ++A  +++ 
Sbjct: 370 RKEIPTIDDIFET-KYNTLTDKI-TKNIEKDDFKKYIPFVQKLDDEFNLVDVSAALVKM- 426

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                                  D    F      +     S     S G K K   + L
Sbjct: 427 ---------------------IFDKEMGFDYSDDDKLKSDESVRLFFSAGRKDKLTVKKL 465

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           +  +  +SG+    IG I +    TFV+V     D++ RT
Sbjct: 466 LEFIDNASGVEGNEIGDIDILDKFTFVDVPERLRDVIIRT 505


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
 gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
          Length = 460

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 187/337 (55%), Gaps = 7/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL    Y   + +Q A + P L  +DV+  A+TG+GKT AF L L    +  ++   P  
Sbjct: 27  ALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPL----IEMHEPGQPG- 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTREL  Q+  E E L     +VV    GG  + R+ R L  G  +VVGTPG
Sbjct: 82  -PQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAKGVDVVVGTPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH++   +++  +  VVLDEAD MLD+GFR DIE IL   P+  + L+ SAT+SP +
Sbjct: 141 RVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLLLSATLSPEV 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  Y  + V +N++ +      I  + + V  + +   ++++L     +  IVFC T
Sbjct: 201 RRLAARYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRKMELLLHLLELEKPRQCIVFCRT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  + LA     V  + G+L Q  R+  ++  RDG   + +ATDV  RGID+ ++
Sbjct: 261 KRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVATDVVGRGIDVEEI 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
             V++ ++  +PEN LHR GRTGR G+ G++  FV P
Sbjct: 321 SHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGP 357


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 27/362 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +P ++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S ++   
Sbjct: 162 LPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYIMRQP 221

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               EN+    A  P A+ +APTRELA Q+  E   L   T   +A  +GG S+  +   
Sbjct: 222 PMTEENE----ADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGAK 277

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           L+ G  IV+ TPGRL D I      ++    VVLDEAD M+DLGF   +  +LD+ P   
Sbjct: 278 LRKGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSSF 337

Query: 180 ----------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
                           R   MFSAT+ PA+  LAK Y +  V V I S  +   ++  R 
Sbjct: 338 LKPDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQRV 397

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            +V  +++   +   +     K  IVF +T+       + L E  ++   L G  +Q +R
Sbjct: 398 FVVKENEKPRVLEQEMESVDEKRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQR 457

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              ++  RDG     IATDVA RGID+PD+ LVI+ ++ +N EN  HR GRTGRAG+KG+
Sbjct: 458 EAGIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRAGKKGV 517

Query: 344 SV 345
           +V
Sbjct: 518 AV 519


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 3/345 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ E+D  S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLI-ESD-LSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++++K +VLDEAD MLD+GF  D++ ++ S    R
Sbjct: 120 LKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +     K L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG +G ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAI 344


>gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 411

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 199/343 (58%), Gaps = 2/343 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F +IP  + I +A++E  +   T VQE  +   L +K+V+V+AQTG+GKT AF L + + 
Sbjct: 3   FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + D         AL I PTRELA+Q+    +     + +      GGVS+  ++  L
Sbjct: 63  LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKEIL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D      +++S L+  VLDEAD MLD+GF +DI+ I    P+K++
Sbjct: 123 AKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSATI   I  L+K+  K+A +V+I  E     +I      +   ++ +  +++LR 
Sbjct: 183 TLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLRN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V +  + L ++ + V ++ G+ +Q  R+ A++  +  +A + IAT
Sbjct: 243 TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           DVAARGID+ +++ +I+ ++ + PE  +HR GRTGRAG+ G++
Sbjct: 303 DVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIA 345


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AI+F 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIIFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 430

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 197/351 (56%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L+   +V  T VQEA + P +  KDVL +AQTG+GKT+ F L     LLA 
Sbjct: 7   NLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAMERLLAT 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P  L + PTRELA+QV ++   L  K+    A  IGG S + + RDL+ GA
Sbjct: 67  KGKH-----PAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIRDLKAGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +  + +++  ++ +VLDEAD MLD+GF   I  I+   P++R+ + F
Sbjct: 122 RLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQRQTMCF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI PA+  L      + VR++  S  +  S +   A  V  +D+  A+V+ +      
Sbjct: 182 SATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVD-ADQKAALVHRVVTAEEG 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VF  T+       K L      V  L G+ SQ +R+ AL+  + GRARV +ATDVA+
Sbjct: 241 QSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLVATDVAS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRR 355
           RGI + ++  VI+ ++    E+ +HR+GRTGRAG  G+ + F  P  ++RR
Sbjct: 301 RGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTP--LERR 349


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY N T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   K+   V +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRRA 356
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++       +V    +++  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 357 ERLFREANV 365
           +R   E  V
Sbjct: 366 DRKLNEVTV 374


>gi|238750131|ref|ZP_04611634.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
 gi|238711675|gb|EEQ03890.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
          Length = 619

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 185/341 (54%), Gaps = 10/341 (2%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKT- 101
           AQTGSGKT AFGL L   +        PA  AP  L +APTRELA+QV   L        
Sbjct: 2   AQTGSGKTAAFGLPLLHNI-------DPALKAPQVLVLAPTRELAIQVAEALTSFSKDIK 54

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
           GV V    GG     + R L+ G  +VVGTPGRL DH++   L +S+LK +VLDEADEML
Sbjct: 55  GVNVVALYGGQRYDVQLRALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEML 114

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
            +GF +D+E IL   P + +  +FSAT+  AI  + + + K+   V I S      DI  
Sbjct: 115 RMGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 174

Query: 222 RAVLVALSDRDN-AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
               V    R N A+V  L       AI+F  T+ +     + L    +   AL+G+++Q
Sbjct: 175 VYWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQ 234

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R   L+ ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR
Sbjct: 235 ALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 294

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            G ++  +    +R  + + R   +++     P+ E + ER
Sbjct: 295 AGRALLFVENRERRLLQNIERTMKLTIPEVELPNAELLSER 335


>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 503

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 3/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +AL E+GY+N T +QE  +   L  +DVL  AQTG+GKT +F L +   L     R
Sbjct: 28  EPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSRAR 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P +L + PTRELA+QV            +  A+ IGG S+  +R  L  G  ++
Sbjct: 88  ---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVDVL 144

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D     GL +S ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT
Sbjct: 145 IATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFSAT 204

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++P I  LA  +  +  ++ ++      + I     LVA  D+  A+  ++R    +NA+
Sbjct: 205 MAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQNAL 264

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V    K L  H F    L G++ Q  R   L+  + G  R+ + +DVAARGI
Sbjct: 265 VFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAARGI 324

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  L  V + ++  + E+ +HR GRTGRAG +G ++
Sbjct: 325 DIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRAL 361


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 199/369 (53%), Gaps = 17/369 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E IP+ + + +    Y   T VQ+  L      +D++  AQTGSGKT  F   +  ++L 
Sbjct: 141 EYIPKSLLDNIIRCDYRRPTPVQKYGLAIGCIGRDLMACAQTGSGKTAGFLFPIIISML- 199

Query: 65  ENDRFSPASAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
              R  P+ APL            L ++PTRELA+Q+ +E +     TG+  AV  GG  
Sbjct: 200 ---RNGPSKAPLPDDYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTP 256

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +      L++G  I+VGTPGR+ D I+   L +  +  +VLDEAD MLD+GF   I  I+
Sbjct: 257 MREVLDSLRSGCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIV 316

Query: 174 DSS--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           + S  P+ R+ LMFSAT    I  LA ++  D V + +        DI+ R + V  +D+
Sbjct: 317 EQSGMPRNRQTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADK 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+ +++ L   G    ++F  T+       + L    FQ  ++ G+ SQ +R +AL   +
Sbjct: 377 DSYLLHELENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFK 436

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             R ++ +ATDVAARG+D+PD+ LVI+ +   N E+ +HR GRTGRAG  G+++  I +N
Sbjct: 437 LNRVQILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGNTGVAISFINEN 496

Query: 352 MQRRAERLF 360
            +  A  L+
Sbjct: 497 NRPIARDLY 505


>gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
 gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
          Length = 480

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 195/367 (53%), Gaps = 8/367 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           + +AL    +   T VQ   L+     +D++V +QTGSGKT A+GL +   +  AEN   
Sbjct: 15  LKQALKALHFHTPTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICEMVDWAEN--- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA+QV ++L  L     +  A   G      ++ +L    HIV 
Sbjct: 72  ----KPQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQKNHIVC 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++ +LK  VLDEADEML++GF + +  I++  P KR  ++FSAT+
Sbjct: 128 GTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSMLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  L++ + +    + IA E      I +  +      + + +   +      + I+
Sbjct: 188 SDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDSCII 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V+  T  L +       + G + Q++R   +   ++G  R  IATD+AARGID
Sbjct: 248 FCNTQDRVNELTMKLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  VIH +L    E  +HR+GRTGRAG+ G ++  + +N +   + L +EA +    
Sbjct: 308 VSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELKQEAGIDFKT 367

Query: 370 EPAPSVE 376
           +P P+ E
Sbjct: 368 QPYPTKE 374


>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
           pneumophila str. Corby]
 gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           str. Corby]
          Length = 414

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +     A     +
Sbjct: 12  LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+V 
Sbjct: 70  SRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT +
Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +VF
Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGID+
Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L   PE+ +HR GRTGRAG  G++V ++
Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 190/342 (55%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL +  T+  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPILQTIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++  +K VVLDEADEMLD+GF  DIE IL  +  +++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRKQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 200/367 (54%), Gaps = 10/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK F+   + + I  A+ E GY   T +Q  ++ P ++E +D+L  AQTG+GKT AF L 
Sbjct: 1   MKNFDEAGLAEPILRAVKEEGYEAPTPIQREVI-PLMKEGEDILGIAQTGTGKTAAFVLP 59

Query: 58  LASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           L  T LAE DR  PA     AL +APTRELA Q+   +       G  VAV  GGV    
Sbjct: 60  LL-TRLAE-DRKKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGP 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L  G  IV+ TPGRL DH+   G+ +     VVLDEAD+MLDLGF   I  IL   
Sbjct: 118 QLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ ++ SAT+   I  LAK +  +   +++A  +R    ID     +  S +  A++
Sbjct: 178 PKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALL 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL     + AIVF  T+    R +  L +      A+ G  SQ+ R  +L   ++GR +
Sbjct: 238 DILSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           + +ATD+AARGID+  +  V++ EL + PE  +HR GRT RAG+ G++V +     Q   
Sbjct: 298 ILVATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYL 357

Query: 354 RRAERLF 360
           R  ERL 
Sbjct: 358 RDIERLI 364


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 3/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S+ GY   T++Q A + P L+ KD++ SAQTG+GKT AF L L  TLL + +    +
Sbjct: 14  QAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLETLLRKPNS---S 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +P  L I PTRELA Q+    +              GGV +  + R L+ G  +++ TP
Sbjct: 71  KSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLKQGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++  +  +VLDEAD MLD+GF   I  I    P  ++ LMFSAT S  
Sbjct: 131 GRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQTLMFSATYSDE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+ Y +  V V++  +N     +D     V    +   +  +L  +G    +VF  
Sbjct: 191 IRTLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPVDKKQKSAVLQYLLNNYGWVQVLVFSR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++  + L +   +  A+ G  SQ +R+ AL   + G+  V +ATD+A+RGID+  
Sbjct: 251 TKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLVATDIASRGIDIAQ 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L +VI+ +L + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 311 LPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLV 346


>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 458

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 195/341 (57%), Gaps = 10/341 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ +DV+  A+TGSGKT AF L +   LL    R+       AL + PT
Sbjct: 46  TKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQALLQNPQRY------FALILTPT 99

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + + L +K GV  AV +GG+ +  +   L    H+++ TPGRL DH+   K
Sbjct: 100 RELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALLLAKKPHVIIATPGRLVDHLENTK 159

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSAT++  +  L +    
Sbjct: 160 GFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRERRTLLFSATMTQKVQKLQRASLH 219

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D V+V ++S+ +    +    + + +  +D  +V+I+        ++FC T  +  R   
Sbjct: 220 DPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIINEMAGNTFMIFCGTCHNTLRTAL 279

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L +  F  + L G++SQ +R  AL   R     + I+TDVA+RG+D+P +++VI+ ++ 
Sbjct: 280 LLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILISTDVASRGLDIPHVDVVINFDIP 339

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           ++ ++ +HR GRT RAGR G ++  + Q    + +R E+L 
Sbjct: 340 THSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLI 380


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 186/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTILFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +ALS+      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + L+ E 
Sbjct: 3   LPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNE- 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
                 S   AL I PTRELA QV  E+  L +++ ++ VA+ IGG  + R+   LQ   
Sbjct: 62  -----PSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y     RV++  +      I    V  + S++   +V  L      
Sbjct: 177 SATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKG- 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 236 SIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           RG+D+P ++ VI+ ++  +  + +HR GRT RAG +G ++ FV PQ+ +R
Sbjct: 296 RGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRR 345


>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 581

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 193/343 (56%), Gaps = 7/343 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEND 67
           Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L + + L   D
Sbjct: 16  QDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNMDLESRD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA+QV  + +        +   CI GG     + R L+ G  
Sbjct: 76  R-----APQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGVK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD+ ++L     + + L+FS
Sbjct: 131 VVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSDECQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L       
Sbjct: 191 ATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEVEETDG 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ V +ATDV AR
Sbjct: 251 VIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           GIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G+S+ ++P
Sbjct: 311 GIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVP 353


>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 520

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 185/344 (53%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAE 65
           I  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L        
Sbjct: 12  IVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSDSAARGA 71

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N    PA  P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G
Sbjct: 72  NGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGINPQIEQLKRG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+
Sbjct: 132 VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKILNVLPAKRQNLL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   + +A  N     +D R   V    +   + +++R H  
Sbjct: 192 FSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRELLAHLVRQHDW 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  R+ +ATD+A
Sbjct: 252 HQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKSGTLRLLVATDIA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++
Sbjct: 312 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLV 355


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L+ 
Sbjct: 65  -ENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +  AL + G      +Q A L   L  +DVL  AQTGSGKT+AFGLAL S L   
Sbjct: 26  NLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALLSRLDGG 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P AL + PTRELA+QV   L  L    G+     +GG+S+ R+   L  G 
Sbjct: 86  KAR---PRRPRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALLRGV 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL DH+R     +  ++ V +DEAD+M D+GF   +  ILD +P   + L+F
Sbjct: 143 DLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQRLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  A+  L   Y  D V  ++A        +++    V   D+   +  I    G  
Sbjct: 203 SATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHHLFQVEHKDKQAVVTEIAARQG-- 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R T  L        AL G  +Q +R+  L   R GR  V +ATDVAA
Sbjct: 261 RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLVATDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  + LV+H + +++ ++ LHR+GRT RAG  G  V ++ +  +R   R+   A V
Sbjct: 321 RGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRRTVRRMLERAGV 380


>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 451

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++     
Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4]
          Length = 460

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v]
          Length = 432

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 200/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AIT ++   
Sbjct: 114 KGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L +     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P   +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPVNSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247
           I  LA  +  +  RV +A      + I+ R  LVA     +    +LR+        +N 
Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R
Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355


>gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 413

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 195/374 (52%), Gaps = 6/374 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+        A 
Sbjct: 19  AIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQSKPEARKAG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISALRKPLDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+    +   V++   N     +     LV    + + I +I+R  G    +VF  T
Sbjct: 199 RSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLISHIIRESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367
             V++ EL + PE+ +HR GRTGRAG  G +V ++  +   + +  ERL +   E     
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVA 378

Query: 368 VWEPAPSVEAIRER 381
            W P  +  A  ER
Sbjct: 379 DWTPPATSAAAFER 392


>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 480

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY   T +Q   +   L  +D++  A+TGSGKT AF L +   LL +   F   
Sbjct: 65  DACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQALLEKPQAF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+G++ E L +   +  AV +GG+ +  +   L    H++V TP
Sbjct: 122 ---FGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKPHVIVATP 178

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +V+DEAD +LD+ F   I+ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I +L +   +D VRV+I+S   Q  S +    + +    +D  +V +      K  +VF
Sbjct: 239 KIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVYLANEFAGKKLVVF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T +   R   +L    F  + L G+L+Q  R  AL   R G   + +ATDVAARG+D+
Sbjct: 299 TRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++VI+ +L+ + +  +HR GRT RAG+ G+++ ++ Q
Sbjct: 359 PLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQ 398


>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 414

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +     A     +
Sbjct: 12  LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+V 
Sbjct: 70  SRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT +
Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +VF
Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGID+
Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L   PE+ +HR GRTGRAG  G++V ++
Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 34  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 87  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 146

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 147 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 206

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 207 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 264

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 265 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 324

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 325 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 368


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R LQ   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 193/343 (56%), Gaps = 13/343 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E G+   T +Q   L   L  KD+   AQTG+GKT+AF +A  + LL      +
Sbjct: 20  IQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLT-----T 74

Query: 71  PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           P       + P A+ +APTRELA+Q+ ++ E L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P   +R  
Sbjct: 135 VDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  D  +V IA   +   +I       ++ D+   ++ ++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDKMRLLLTLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357


>gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
 gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
          Length = 460

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 13/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   + +Q A +   +   D+L  AQTG+GKT AF L L S L A N      
Sbjct: 21  KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 78

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L +APTRELA+QV    + + +      V    GG S   + R L+ GA +VVGT
Sbjct: 79  ----ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRRGAQVVVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++  P  R++ +FSAT+  
Sbjct: 135 PGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATMPE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ + K    + IAS+    + I  R   V    + +A+  +L     +  +VF 
Sbjct: 195 QIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVESYEALLVFV 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       LA       AL G++ Q+ R   +  +R G+  + IATDV ARG+D+ 
Sbjct: 255 RTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVE 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V++ ++  + E+ +HR GRTGRAGRKG ++ FV P+  +RR  R    A    + E
Sbjct: 315 RITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI-E 371

Query: 371 P--APSVEAIRE 380
           P   PS E I +
Sbjct: 372 PMKMPSTEDINQ 383


>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 190/336 (56%), Gaps = 2/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY N T +Q   +   L  +D+L +AQTG+GKT  F L +   LL    +     
Sbjct: 27  ALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQRLLDNPMQTRKPG 86

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P  L + PTREL  QV   ++  YAK   + +V I GGVS++ + + L+    I+V TP
Sbjct: 87  RPRCLILTPTRELTAQVEESVK-AYAKYTRIRSVLIFGGVSINPQIQALRQPVDILVATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   +++S ++  VLDEAD MLD+GF  DI  ++   P KR+ L+FSAT SP 
Sbjct: 146 GRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNLLFSATFSPE 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA     +   V++A  N     +   A LV  + +   +  ++     K  +VF  
Sbjct: 206 IRSLAHGLLDNPAEVDVAPRNTASELVAQSAHLVPKTRKRALLSYLIGSRRWKQVLVFTK 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +   + +A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+ +
Sbjct: 266 TKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLVATDIAARGLDIDE 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL + PE+ +HR GRTGRAG +G +V ++
Sbjct: 326 LPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLV 361


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 208/377 (55%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +A+ E G+   T +Q+  L   L  +DV+ SA TG+GKT AF L  +   +A  
Sbjct: 16  LPHLL-KAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLP-SLQRIATT 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV   +  L     +     +GG+   ++   L+    
Sbjct: 74  ARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEMLRRRVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+    L++S ++ +VLDEAD MLD+GFR+ +EFI  + P +R+ L+F+
Sbjct: 134 LIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLLFT 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT+      LA+   +D VR+++A +    + ++ R +    L  +   +  +L      
Sbjct: 194 ATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLGGEEFG 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+    R    L+E   + + L G++ Q++R+  +Q +RDGR  V +ATDVAA
Sbjct: 254 KGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVIVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRAERLF--R 361
           RGID+ DL  VI+ +L    E+ +HR GRTGRAG  G+  S+F   +  Q RA   +  +
Sbjct: 314 RGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRAIEAYTNK 373

Query: 362 EANVSVV--WEPAPSVE 376
            A++ V+   EP P  E
Sbjct: 374 AADMHVLPGLEPMPEPE 390


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 4/340 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPAS 73
           L E G    T +Q   +   L   DVL  AQTG+GKT AFGL L  TLL+EN  R SP +
Sbjct: 20  LKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPLI-TLLSENPGRPSPKT 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+   L+     T + VA+ +GG S++ + + L+ G  I+V TPG
Sbjct: 79  V-RALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQSKRLEKGIDILVATPG 137

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + L +     +VLDEAD+MLD+GF   +  I    P++R+ ++FSAT+   +
Sbjct: 138 RLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPEQRQTMLFSATMPKLM 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A  Y K   R+ ++   +    +      +A +++ + ++ +L  H  + A+VF  T
Sbjct: 198 NEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIELLGAHKDERALVFGRT 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K L    F   ++ G  SQ +R  AL   + G  +V +ATDVAARG+D+PD+
Sbjct: 258 KHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVLVATDVAARGLDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             V + EL + P+  +HR GRT RAG+ G ++ F  P  M
Sbjct: 318 RHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEM 357


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 187/347 (53%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNA 247
           I  LA  +  +  RV +A      + I+ R  LVA     +    +LR+        +N 
Sbjct: 191 IERLADMFLHNPQRVEVARPASTATTIEQR--LVATGAEGHEKRKVLRHLIRSASELQNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 IIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R
Sbjct: 309 LDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDER 355


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 196/358 (54%), Gaps = 15/358 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           Q I +AL++ G  +   +Q   L   L+  D++  A+TG+GKT+ FG+ L + ++A    
Sbjct: 77  QEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLLNRVVAPGEP 136

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN 123
             D       P A+ +APTRELAVQV  +L    A +  + V    GG +   +   LQ 
Sbjct: 137 GWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQIEQLQR 196

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ D +    LN+   + +VLDEADEMLDLGF  D+E IL   P KR  +
Sbjct: 197 GAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILSRLPAKRHTM 256

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVN 237
           +FSAT+  A+ ++A+ Y      +  A  + +   +       YRA  +   D+   +  
Sbjct: 257 LFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHAL---DKIEVLAR 313

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+  G   +IVF  T+ + ++ +  L +  F   A+ G+L Q  R  AL+ +R G+  V
Sbjct: 314 LLQAEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDV 373

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            +ATDVAARGID+ D+  V++ +   +    LHR GRTGRAG KG +V FV   +M R
Sbjct: 374 LVATDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDWDDMPR 431


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/341 (37%), Positives = 186/341 (54%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A
Sbjct: 14  QAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    E       + VA+ IGGVS   +   +  G  +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKITRGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P 
Sbjct: 131 GRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNA 247
           I  LA ++  + VR+ +A      S I  R  LVA     +     LR    GA   +N 
Sbjct: 191 IQRLADDFLHNPVRIEVARPASTASTIAQR--LVATGGEGHEKRKTLRGLIRGAVELRNG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC+ +  V++  + LA H F V AL G++ Q+ R  AL   R G   + +A+DVAARG
Sbjct: 249 LIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLVASDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++
Sbjct: 309 LDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLV 349


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 198/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL +APTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGTSFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPARKR 383


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 195/350 (55%), Gaps = 17/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI Q + +AL+ +G +    +Q   +   L  +D++  A+TG+GKT+ FGL +  +L   
Sbjct: 7   NIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVLQSL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P     AL + PTREL VQV  +L    +     +A   GG +   +   +++GA
Sbjct: 64  --GINPEPGVKALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQVEQIKDGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    + L++  +K +VLDEAD+MLDLGF  DIE +   +P  R  ++F
Sbjct: 122 QVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPPTRHTMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRV-------NIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           SAT+   I  LA+ +    + +        +  +N +H  + YRA  +   D+D  I  I
Sbjct: 182 SATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNIKH--VVYRAHNL---DKDEVIARI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    +VF  T+ + ++  + L +  F   A+ G+L+Q++R  A+   + G+  + 
Sbjct: 237 LQSEGRGKTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V  +
Sbjct: 297 IATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFV 346


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 509

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +AL++ G +    +QE  +   L  +D++  A+TG+GKT  FGL L   L   
Sbjct: 7   NIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLIQRL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P     AL + PTRELAVQV  +L+         V    GG +   +   L+ GA
Sbjct: 64  --GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIEQLKAGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +  + L++ +++ +VLDEAD+MLDLGF  DIE +   +P  R  ++F
Sbjct: 122 QIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKMLDLGFLSDIEKLFAQTPAVRHTMLF 181

Query: 186 SATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I  LA+ +      +R     E    ++I +        D+D  I  IL+  G
Sbjct: 182 SATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGRILQAEG 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ + +R  + L +  F   A+ G+L+Q++R  A+   + G+  + IATDV
Sbjct: 242 RGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+  +  + +  LHR GRTGRAG+ G++V  +
Sbjct: 302 AARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFV 346


>gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 469

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 21  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 80  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 251 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +   +   N       
Sbjct: 17  ALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLERVDGSNRHVQ--- 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+QV  EL  +   T +      GG  ++R+ R L+    I+V TPG
Sbjct: 74  ---VVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALKKNPQIIVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +    +K VVLDEADEML++GF DDI  IL + P+  + L+FSAT+   I
Sbjct: 131 RLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQTLLFSATMPKTI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+ Y  +   + +         I+   + V    + + +  +      + AI+F  T
Sbjct: 191 RELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRLFDLQAPELAIIFTRT 250

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + +ATDVAARG+D+  +
Sbjct: 251 KRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATDVAARGLDISGV 310

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             V + +L  +PE+  HR GRTGRAG+ G +  FVIP+ ++
Sbjct: 311 SHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIE 351


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/331 (35%), Positives = 193/331 (58%), Gaps = 11/331 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ   +   L  +DV+  AQTG+GKT+AF L +   +  +++         AL I+PT
Sbjct: 27  TQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLPILEKIDVDSEDTQ------ALIISPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  E + L +  G+ +    GG  V ++   L+    +VVGTPGR+ D IR + 
Sbjct: 81  RELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKKNIPLVVGTPGRILDLIRRES 140

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           LN+S LK +VLDEAD+ML +GF D+++ I   +P +++++ FSAT +  +  LAK Y  +
Sbjct: 141 LNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVMCFSATFNKEVKKLAKTYMNE 200

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
              V++  +N    +ID   ++V  +DR    A+  ++       AIVFC T+  V+   
Sbjct: 201 PHYVSVKGQNVTLDEID--QIIVHTTDRKKQEALCEMIDTQQPFMAIVFCRTKRRVTALY 258

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           + L++  +    L G+LSQ +R   ++  R+ + ++ IATDVAARGID+  +  + + ++
Sbjct: 259 EDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIATDVAARGIDVDGITHIYNYDM 318

Query: 322 SSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             + +  +HR GRTGRAG KG +V FV P++
Sbjct: 319 VLDTDTYIHRIGRTGRAGEKGTAVTFVTPKH 349


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 197/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L+ 
Sbjct: 65  -ENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 180/609 (29%), Positives = 294/609 (48%), Gaps = 69/609 (11%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++  GY + + +Q A + P L  +D+L  AQTG+GKT AF L + S L L + D  
Sbjct: 19  ILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTGAFALPILSRLNLTQMDT- 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127
                   L +APTRELA+QV    +  YA+      V    GG S   + R L+ GA +
Sbjct: 78  ------QVLILAPTRELAIQVAEACQS-YAQFIPDFHVLPIYGGSSYDSQLRALRRGAQV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +R   L++S LK +VLDEADEML +GF DD+E++++  P  R++ +FSA
Sbjct: 131 VVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEWVIEQCPLDRQIALFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +A  + K  V + IAS+    ++I  R  LV+   + +A+  +L        
Sbjct: 191 TMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHKLDAMTRMLEVEQYDAL 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+ +    T  L+       AL G++ Q+ R   ++ ++ G+  + IATDVAARG
Sbjct: 251 LVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLKAGQIDILIATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           +D+  +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P+  +RR  R+  +A   
Sbjct: 311 LDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPR--ERRMLRMIEQATRQ 368

Query: 367 VVWEP--APSVEAIR-----------------ERDAQRILQ-----------DPLFLDS- 395
            + EP   P+ + I                  E D Q   Q           DPL L + 
Sbjct: 369 PI-EPMQMPTAKDINKHRLERFKLQIRETLDSEEDLQPFQQIINEFLEDESTDPLDLCAA 427

Query: 396 ----IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRD 448
               +QGDE     + + +++PE       R+   G                 G DRF  
Sbjct: 428 LAKMVQGDEP----LFMNENEPEPSQ----RMEERGGDRFDRDRGARRDRNDRGGDRFER 479

Query: 449 DSRAFKVGGGSRDNFKG-SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
                +         +G ++ + L VG +   +   ++  +   +GI+ + IG I +  D
Sbjct: 480 GGDRPERSERRSRAPEGPTARYKLHVGHEHGVKPGQIVGAIANEAGIDSKFIGHIEIYND 539

Query: 508 LTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDF--RGYKSSGFKSKNSQDGA- 560
            T V++      + ++ L++     + + ++   GE P+   R   S G +     DGA 
Sbjct: 540 FTTVDLPEGMPTEVMNTLKKARVCQRPLDIELFSGEVPESARRARPSFGDRRPPRADGAR 599

Query: 561 TKRFKRFKG 569
           T+    F+G
Sbjct: 600 TEGRGEFRG 608


>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 365

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 195/347 (56%), Gaps = 9/347 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ + +++ +A+ + GY   T +Q+  +   L+  D++  A TG+GKT AFG+ +     
Sbjct: 5   FQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV---- 60

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              ++ S      AL + PTRELA+QV  +L  L     + V V  GG  V R+   L  
Sbjct: 61  ---EKISKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLELLSK 117

Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +IV+GTPGR+ D +    LN+  +  +VLDEAD MLD+GF +DIE I+  +PK R+ 
Sbjct: 118 VVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPKDRQT 177

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRY 241
            +FSATI   I  LA+ + KD  +            I+ R + L +   + + +  ILR 
Sbjct: 178 FLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSSKQKISELERILRE 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  I+F  T+      ++ L    F VV+L G+++Q++R NAL++ R+G+ +  +AT
Sbjct: 238 HLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKTVVAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVA+RG+D+  + LVI+ ++  +PE  +HR GRTGR G  G +  +I
Sbjct: 298 DVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLI 344


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 193/346 (55%), Gaps = 4/346 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  I + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L +++ + +    P+ AL +APTRELA+Q+    E       +   V  GGVS + + +
Sbjct: 62  NL-SKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK 
Sbjct: 121 VLREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKI 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L
Sbjct: 181 RQNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +
Sbjct: 241 KDKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++
Sbjct: 301 ATDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAI 346


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +ALS+      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + L+ E 
Sbjct: 9   LPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
                 S   AL I PTRELA QV  E+  L +++ ++ VA+ IGG  + R+   LQ   
Sbjct: 68  -----PSIGSALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 123 QIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y     RV++  +      I    V  + S++   +V  L      
Sbjct: 183 SATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKG- 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 242 SIIIFVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           RG+D+P ++ VI+ ++  +  + +HR GRT RAG +G ++ FV PQ+ +R
Sbjct: 302 RGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRR 351


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 212/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I  LA+   KD + + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPHIIRALAREILKDPIEITVEGADNA-PEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFTPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 192/357 (53%), Gaps = 29/357 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L + S L     
Sbjct: 11  PKVL-KAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPMLSLLSRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQDKLIDKGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASE-----------------NRQHSDIDYRAVLVALSD 230
           T++P I  +   +  +  RV +A +                  R+++D + R +L AL D
Sbjct: 187 TMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEKRKLLRALID 246

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R+ A  +        NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   
Sbjct: 247 REGAACS--------NAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDGF 298

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           R G  R  IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +
Sbjct: 299 RAGTLRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMI 355


>gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
 gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
          Length = 478

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 6/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V  A   G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L  +  +
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYSYHPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +      
Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360

Query: 366 SVVWEPAPSVEAIR 379
            +     PS E ++
Sbjct: 361 EIRKASLPSDEEVK 374


>gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
 gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
          Length = 460

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 192/343 (55%), Gaps = 9/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L++KDVL  AQTG+GKT +F L + +  L E  R + A
Sbjct: 19  KAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPMLT--LLEKGR-ARA 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV    +       + VA+ IGGVS   + R L+ GA +++ TP
Sbjct: 76  RIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQDRKLERGADVLIATP 135

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH  RGK L +  ++ +V+DEAD ML++GF  D+E I   +P  R+ L FSAT++P
Sbjct: 136 GRLLDHFERGKLLLVG-VEILVIDEADRMLNMGFIPDVERICKVTPFTRQTLFFSATMAP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHG--AKNA 247
            I  L K +    V + I   +     I  R V       D+   +  +++  G   KNA
Sbjct: 195 EIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLKELIQNEGDELKNA 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+ +  +S   + L +H F V  L G++ Q  R+N L   ++ +  + IA+DVAARG
Sbjct: 255 IIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNKFILLIASDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +
Sbjct: 315 LDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTK 357


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
 gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
          Length = 460

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 211/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223]
 gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 469

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 21  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 80  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 251 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 205/358 (57%), Gaps = 10/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +A+++ G+V+ T++Q+  +   L  +DV+  AQTG+GKT AFGL L   + + 
Sbjct: 153 GLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 212

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           +      S   AL +APTRELA+Q    +  + A++ G+ V    GG     +   L+ G
Sbjct: 213 D------SVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKGG 266

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I +S P +RR  +
Sbjct: 267 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERRTAL 326

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L    A
Sbjct: 327 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 386

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +ATDVA
Sbjct: 387 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 446

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V F+ P+     R+ ERL
Sbjct: 447 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 504


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+  A+   GY   + +Q   +   L  +D+L  AQTG+GKT AF L + S L  E 
Sbjct: 17  LPAVL-SAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILSRL--EL 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           DR  P      L +APTRELA QV     ++     G+ VA+  GG+    + + L+ GA
Sbjct: 74  DRREPQ----VLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRRGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L +  L A+VLDEADEML +GF DD++ ++  +P   + + F
Sbjct: 130 QVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRVFF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   Y  + V+V I S      +I+ R V +    +  A+  IL      
Sbjct: 190 SATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAKLEALARILEVEPVD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  TRA+ +   + L+     V +LSG+L Q  R   +  ++ G+  V IATDVAA
Sbjct: 250 AAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+P +  VI+ +L  + E   HR GRTGRAGR G+++
Sbjct: 310 RGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAI 349


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 451

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 195/342 (57%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + ++  G+   T +QE  L P L  KDV   AQTG+GKT AF ++L + LL +
Sbjct: 7   NLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLFTRLL-K 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL +APTREL VQ+ ++ + L   TG  +    GGV   +++  L+ G 
Sbjct: 66  QEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKNALKEGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IV+GTPGRL D+++ K  ++ +++A+V+DEAD M D+GF  D+ FIL   P   +R+ L
Sbjct: 126 DIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFDERQNL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT++  +  LA  +     +V +  E      ++     V+  ++   ++ +LR  G
Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVIYHVSRKEKFPLLLGLLRKEG 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+         L  + F    +SG++ Q++R   L+  + G+  + IATDV
Sbjct: 246 MERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKLPIMIATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347


>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 460

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/342 (36%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  AL E GYV+ T +Q  ++   L+  D+L +AQTG+GKT AF L L   LL   N   
Sbjct: 13  ILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQRLLPFANTST 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SPA  P+ AL + PTRELA+QV   ++       +   V  GGV+++ +   L+ G  I+
Sbjct: 73  SPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINTQIPILKTGVEIL 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ K L ++ +  +VLDEAD MLD+GF  D+  I+   P +R  +MFSAT
Sbjct: 133 VATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALLPAQRVNMMFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHGAKN 246
               I  LA +       + +A   R  + +    V+  V    +   + ++++    + 
Sbjct: 193 FPEEIRKLADSILSTPTFIEVA---RNETAVTVTQVVHPVHHERKRQLLAHLIKSRDLRQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G+ +QQER  AL   + G  RV +ATDVAAR
Sbjct: 250 VLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTIRVLVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+  L  V++ +L  N E+ +HR GRTGRAG KG ++ ++
Sbjct: 310 GIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLV 351


>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 211/400 (52%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L      A    
Sbjct: 45  PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103

Query: 62  LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
            LA+  R                P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           AGR G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 188/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV   L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 542

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/329 (37%), Positives = 184/329 (55%), Gaps = 2/329 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   L   L  +D+   AQTG+GKT AF LA+ + LL           P AL
Sbjct: 144 GFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTRLLNHPLEERKPGCPRAL 203

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ ++ E L   TG+   V  GG+   ++RR L+    +V+GTPGR+ D+
Sbjct: 204 VLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSLEQPVDLVIGTPGRIIDY 263

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196
            RG  L +S ++ +V+DEAD MLD+GF  D++ I+   P+K  R+ L+FSAT+   I  L
Sbjct: 264 SRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGERQTLLFSATLEDHILRL 323

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A  +  + V V    E     +I+     V   ++   ++ ILR       ++F + +  
Sbjct: 324 ASGWLAEPVIVESEPEKMVSENIEQTFYSVLRDEKLALLLYILRTEPYDRVLIFGNRKDV 383

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R    LA   ++V  LSG++ Q++R   L+  R G  ++ IATDVAARGI + D+ LV
Sbjct: 384 NLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKIVIATDVAARGIHVDDVSLV 443

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L    E+ +HR GRTGRAG  G S+
Sbjct: 444 INYDLPERAEDYVHRIGRTGRAGHNGKSI 472


>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
 gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
          Length = 426

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 18/393 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I + +   L ++G    T VQE  + P    +DV+  AQTG+GKT+A+ L L +     
Sbjct: 8   GISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPLLA----- 62

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R  P  +A  AL IAPTRELA+Q+      L    G+   V  GG  + R++  L+  
Sbjct: 63  --RIKPQGAAAQALVIAPTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQKEKLRRS 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+GTPGRL DH+R   L +  +  VVLDEADEML +GF +D+E +L ++ +  ++ +
Sbjct: 121 PQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQDYQLAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L K +  +   + +A E    + I+   + V+  D+ + +   +     
Sbjct: 181 FSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCASINEEAP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC+T+         LA+  + V ALSG+L+Q +RS  L+  R  + ++  ATD+A
Sbjct: 241 YLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQILCATDIA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359
           ARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  ++     
Sbjct: 301 ARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRKMEAALK 360

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
              R   V     PAP      E DAQ+    P
Sbjct: 361 ACLRRDVVKKKKRPAPPAG---EGDAQKKAHPP 390


>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 457

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 183/336 (54%), Gaps = 1/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY + T +Q+  +   +  KDVL +AQTG+GKT  F L L   L   + +    
Sbjct: 14  KAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLERLSETHPKMGKK 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              + L + PTRELA QV   ++           V  GGV ++ +   ++ G  IV+ TP
Sbjct: 74  QIRV-LVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLATIRRGVDIVIATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    +G++ S L+ +VLDEAD MLD+GF  DI+ ++   PK+R+ L+FSAT S  
Sbjct: 133 GRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKERQTLLFSATFSLE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    K+ V V +A EN     I      V  S +   +  +++    +  +VF  
Sbjct: 193 IKKLASGLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQLIKTKDWRQVLVFTR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R TK L E      A+ G  SQ  R+ AL   +    RV +ATD+AARGID+  
Sbjct: 253 TKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRVLVATDIAARGIDIDQ 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL + PE+ +HR GRTGRAG+ G +V ++
Sbjct: 313 LPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLV 348


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 194/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   + +E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                +S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 145/425 (34%), Positives = 229/425 (53%), Gaps = 32/425 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  Q   + L+ RG   L  VQ     P    KDV+  A+TG+GKT +F L L   
Sbjct: 24  FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L +         AP  L + PTRELA QV ++ + L  K  V    C  G S ++E+ DL
Sbjct: 84  LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLSVA---CFYGGSPYKEQLDL 140

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
            ++G  I+VGTPGR+ DHI+   L +S +K VVLDE D MLD+GF + +E IL SS K+ 
Sbjct: 141 LKSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRG 200

Query: 180 ----RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRD 232
                + L+FSAT    +  +AK Y +D   ++++  +  Q +   +++ A+    S R 
Sbjct: 201 SENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRA 260

Query: 233 NAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQM 289
             + +I++ Y G++   IVFC T+   +     +   L Q   +L G++ Q++R   L+ 
Sbjct: 261 GVLGDIIQVYSGSRGRTIVFCETKKEANEL--AMNASLKQDAQSLHGDIPQKQREITLKG 318

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V IAT+VAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ + +  
Sbjct: 319 FRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICL-- 376

Query: 350 QNMQRRAERLFRE----ANVSVVWEPAPSVEAI---RERDAQRILQ--DPLFLDSIQGDE 400
              QRR E L ++    A ++      PS   +      DA+++L+   P  +D  +   
Sbjct: 377 --FQRREEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSA 434

Query: 401 KKMVD 405
           ++++D
Sbjct: 435 EELID 439


>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 211/400 (52%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L      A    
Sbjct: 45  PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103

Query: 62  LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
            LA+  R                P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 218 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           AGR G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435


>gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 594

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 155/508 (30%), Positives = 256/508 (50%), Gaps = 29/508 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ E GY + + +Q   +   L  KDVL  AQTG+GKT AF L L S +   N R     
Sbjct: 21  SVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLSRIDI-NLR----- 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AP  L +APTRELA+QV   ++  YA+      V    GG ++  + R L+ G H+VVGT
Sbjct: 75  APQLLVLAPTRELAIQVAEAMQA-YARHLPDFHVLPVYGGQAMEPQLRGLKRGVHVVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DHI+   L ++ ++AVVLDEADEML +GF DD++ IL  +P  R++ +FSAT+  
Sbjct: 134 PGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPANRQVALFSATMPD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ + ++ V + I S       I+ R   V+   + +A+  IL        I+F 
Sbjct: 194 QIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMHKLDALTRILEVEEFDAVIIFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + +   + L    +    L+G+++Q  R  A+  ++ G   + IATDVAARGID+ 
Sbjct: 254 RTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIIIATDVAARGIDVA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R     +    
Sbjct: 314 RVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAIERATGQLITPMR 373

Query: 372 APSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            PS   I ++ +             QD  F +++  + +   DV L+     +IAA    
Sbjct: 374 LPSQSDIADKRSAAFKNQISEAMESQDLAFFETLIEEYQSEHDVGLS-----EIAAALAY 428

Query: 423 I-HRAGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +  +     P EI   + V   DR      RD  R  +     +++      + + +G +
Sbjct: 429 LAQKDRPLLPAEIKETAQVGFGDRQDRGQGRDQDRRDEPRRPRQNDDMARVKYRIEIGHE 488

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRV 504
              + + ++  L   +GI+ + IGAIR+
Sbjct: 489 HGVQPKNIVGALANEAGIDSKYIGAIRI 516


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 193/366 (52%), Gaps = 8/366 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  AEN      
Sbjct: 18  ALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWAEN------ 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTP
Sbjct: 72  -KPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   
Sbjct: 131 GRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPED 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L++ Y      + I +       I++        ++ + + ++       + I+FC 
Sbjct: 191 VERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ +
Sbjct: 251 TQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDN 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     
Sbjct: 311 ITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIG 370

Query: 373 PSVEAI 378
           PS E +
Sbjct: 371 PSKEEV 376


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 191/345 (55%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  +   L ++D+L  AQTG+GKT +F + +   L   
Sbjct: 7   NITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHLQVV 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          AL + PTRELA+Q+   ++     T V   V  GGV+   +   L+ G 
Sbjct: 67  SKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 127 DILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL K+  K+ V++ I  ++     I+     V   ++   +++IL+    +
Sbjct: 187 SATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISILQKAEDQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 247 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L +VI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 307 RGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 351


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 188 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
          Length = 738

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKK--LSVACFYGGTSYQSQINHI 257

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 435

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 495

Query: 350 Q 350
           +
Sbjct: 496 R 496


>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 450

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/398 (31%), Positives = 214/398 (53%), Gaps = 13/398 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA ++ G+   + +Q   +   L+ KDV+  AQTGSGKT AF L +   LL +   F 
Sbjct: 26  LAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQAF- 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+  + E L A  GV  AV +GG+ +  +   L    H+VVG
Sbjct: 85  -----FALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVVVG 139

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+   KG  +  L+ + LDEAD +L+L F  +I+ IL   P+ RR  +FSAT+
Sbjct: 140 TPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRTQLFSATM 199

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   ++ V+V ++++      +    + +    +D  +  +     +   +V
Sbjct: 200 TSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKHKDCYVNYLFNELSSSTMMV 259

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T     +   V     F  + + G++SQ +R  AL   + G   + +ATDVA+RG+D
Sbjct: 260 FTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKFKAGERNILVATDVASRGLD 319

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVS 366
           +P +++VI+ ++  N ++ +HR GRT RAGR G+++ ++ Q    + ++ ERL ++  + 
Sbjct: 320 IPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELYQKIERLIQK-KLD 378

Query: 367 VVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKK 402
               P  +V  + ER  +AQRI Q  +     +G  KK
Sbjct: 379 AYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKK 416


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 186/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G V+   +Q   L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 22  EALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVSADVEAGR 81

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P   + AP AL + PTREL  QV  +L+       V V    GG +   +   L+ G 
Sbjct: 82  ATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAYEPQVEALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    + L++S ++A+VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 142 DVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVAMLPVKRQTMLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +N  S   EN   ++ +         D+   +  IL+  
Sbjct: 202 SATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMVARILQAE 261

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++FC T+ + +  ++ L    F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 262 GRGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 321

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAGR G +V ++
Sbjct: 322 VAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLV 367


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 201/351 (57%), Gaps = 8/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ + +A++  G+   T +Q A +   L  +D++  AQTG+GKT AFGL L   L A 
Sbjct: 26  GLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPL---LAAV 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + + +   A  AL + PTRELA+QV   +  ++ +  GV V    GG S   + R L+ G
Sbjct: 83  DPQLA---AVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLRGLERG 139

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D +    L++  L+ +VLDEADEML +GF +D++ IL  +P  +++ +
Sbjct: 140 AQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPATKQVAL 199

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  +A+ + ++   + +A +    + +     +V   ++  A+  +L    A
Sbjct: 200 FSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVLATSDA 259

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  TR +       LA       ++SG+++Q+ER   ++ +R G   V +ATDVA
Sbjct: 260 DAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLVATDVA 319

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR G ++ F+ P+   R
Sbjct: 320 ARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPR 370


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 15/360 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS+ GY   + +Q  ++   +  +D +  A+TG+GKT AF L +   L    D   P   
Sbjct: 30  LSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQL----DLRRPGMQ 85

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL +APTREL+ QV  E+  L     + +AV +GG  V  +   L+ GA I VGTPGR
Sbjct: 86  --ALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKKGAQIAVGTPGR 143

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DHI    L +  L  VVLDEAD MLD+GFR DIE IL   P+KR+ L+ SAT+ P + 
Sbjct: 144 VIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLLLSATLPPPVE 203

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  Y ++ V ++++ +      ID   + V    +   +  +L     K  IVF  T+
Sbjct: 204 RLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLLFQERPKQTIVFTRTK 263

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  ++ ++ L +V A+ G+L Q +R   L+  R+G+ R+ IATDV  RGID+  + 
Sbjct: 264 RGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATDVMGRGIDVSGIS 323

Query: 315 LVIHAELSSNPENLLHRSGRTGR--AGRKGMS-VFVIPQ------NMQRRAERLFREANV 365
            +I+ ++    ++ +HR GR GR  + +KG +  FV P       N++ R   + +E  V
Sbjct: 324 HIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTNIENRINHMVKEFRV 383


>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 425

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 200/367 (54%), Gaps = 8/367 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFS-P 71
           A++++GY   T +Q+  +   +  +D++ +AQTG+GKT  F L +   L +  NDR +  
Sbjct: 15  AVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPILHRLCSGPNDRLTRV 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A  P  L + PTRELA+QV   +        +      GGV ++ +  +L+ G  I+V T
Sbjct: 75  AKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQIANLRRGVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + +++S ++  VLDEAD MLD+GF  DI  I+   PK+R+ LMFSAT SP
Sbjct: 135 PGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLPKQRQNLMFSATFSP 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     +   V++A+ N     +  R +      +   + ++    G    +VF 
Sbjct: 195 DIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCHLFETRGWHQVLVFA 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+      +K L +   +  A+ G+ SQ  R+ AL   ++G+    +ATD+AARGID+ 
Sbjct: 255 RTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGKLVALVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVV 368
            L  VI+ EL +  E+ +HR GRTGRAG +G ++ ++  + +   R  ERL +     VV
Sbjct: 315 ALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERGSLRDIERLIKRDLERVV 374

Query: 369 ---WEPA 372
              +EP+
Sbjct: 375 IPGFEPS 381


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 189/349 (54%), Gaps = 15/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---- 66
           I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ +   ++A +    
Sbjct: 81  IVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVLEDVIAPDEEGY 140

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +P + P AL I PTREL  QV ++L          +    GGV+   +   L  GA
Sbjct: 141 EDLLNP-NKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFEPQIEALTRGA 199

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L   P+ R  ++F
Sbjct: 200 DIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGRVPENRHTMLF 259

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+   +  LA+ +      +     + Q+  ++      YR   V   ++   +  IL
Sbjct: 260 SATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYR---VHAMNKVEVVARIL 316

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++FC T+ + +R  + L    F V AL G+L Q  R  AL+  R G+  V +
Sbjct: 317 QAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRKGKVDVLV 376

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 377 ATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFV 425


>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 923

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 9/347 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDR--- 68
           AL  RG    T VQ    +  L  +D++  ++TG+GKT+AFGL +   L   AE+ +   
Sbjct: 270 ALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRT 329

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +    +P  L + PTRELA QV  ELE L +  G+   V  GG +   + R L +G  I+
Sbjct: 330 YQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDIL 389

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSA 187
           V TPGR+ DH++   L++S ++  VLDEADEML++GF DDIE I      K+ ++L+FSA
Sbjct: 390 VATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKECQVLLFSA 449

Query: 188 TISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           T+   +  +A  Y  + + V+   +  N+  + + + ++ V+   R + + +I+ Y+G  
Sbjct: 450 TVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGKG 509

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AIVF +++A                  L G++SQ +R   ++  R    +V +ATDVA
Sbjct: 510 SHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVA 569

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ARGID+ D++LV+      +P++ +HRSGRTGRAGR G++V +  +N
Sbjct: 570 ARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAEN 616


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 191/335 (57%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE+ Y   T +Q   +   L   D++  AQTG+GKT AF L +   + A   R +P +
Sbjct: 71  AISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRA 130

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+          T   VAV IGG     + R +++G  ++V TPG
Sbjct: 131 C-RALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRMESGVDLLVATPG 189

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    + +  ++ VVLDEAD+MLDLGF   I  I+   P++R+ +MFSAT+   I
Sbjct: 190 RLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFSATMPKPI 249

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  + +D   V ++ E++    ID + +L+A  ++ + +  +L     + AIVF  T
Sbjct: 250 RALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVERAIVFTRT 309

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    + T+ L +      A+ G  SQ +R  AL   R GR RV +ATD+AARGID+ ++
Sbjct: 310 KHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAARGIDVDNV 369

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRT RAG +G+++ ++
Sbjct: 370 SHVVNFELPNVPESYVHRIGRTARAGAEGVAISLV 404


>gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 421

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 198/342 (57%), Gaps = 18/342 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +E G+   T++Q A + P L+ +DV  SAQTGSGKT AF L L   L AE     PA
Sbjct: 14  QAAAESGFAAPTAIQAAAIPPILQGRDVRGSAQTGSGKTAAFSLPLLQRLAAE-----PA 68

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +P    AL + PTRELA QVG  +  L  +    + +A+  GGVS++ +   L+ GA I
Sbjct: 69  QSPRRVRALVLVPTRELAAQVGETMRSLAQHLPERLKIAIAFGGVSINPQMMSLRGGADI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +    L +  +  +VLDEAD + DLGF +++  IL   P +R+ L+FSA
Sbjct: 129 VVATPGRLLDLVEHNALKLGAVSMLVLDEADRLFDLGFAEELGRILALLPAQRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T  PAI +LA    +D   +++  E     +I  R + V  + R   + ++L+ +  +  
Sbjct: 189 TFPPAIQSLADGMLRDPAVIDMQGEPGTEPNIVQRVIEVDANRRTQLLRHLLKENEWERV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +VF +T+ S     +++AE L++     V   G+++Q  R+  L   ++ R  V IATD+
Sbjct: 249 LVFVATQHS----AQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDL 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+  L +VI+ +L  +P + +HR GRTGRAG  G+++
Sbjct: 305 AARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAI 346


>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 499

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 191/356 (53%), Gaps = 13/356 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+ + GY   T +Q   + P L  +DVL  AQTG+GKT +F L + S L   
Sbjct: 8   NLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMISMLKRG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P +L +APTRELA QV    +     T +  A+ IGGVS   + + +  G 
Sbjct: 68  RAR---ARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQDQLIDRGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L F
Sbjct: 125 DVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPFTRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNI 238
           SAT++P I  +   +  +  +V +A        I    V+   S +D         +  +
Sbjct: 185 SATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEKRQLLRTM 244

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +   G K  N I+FC+ +  V    K + ++      + G+L Q +R   L   RDG  R
Sbjct: 245 IENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAAFRDGTLR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
             +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAG+ G ++ + +P++
Sbjct: 305 FLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICVPRD 360


>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
          Length = 624

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 84  LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 143

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 144 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 201

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 202 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 261

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 262 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 321

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 322 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 379

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 380 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNA-LAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  +       +E  R+R
Sbjct: 366 NRKLPELTIEGMEPTRKR 383


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 194/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 34  QTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 87  QGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTP 146

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R+ ++FSAT+  
Sbjct: 147 GRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPK 206

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K A ++ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 207 AIQELVQQFMK-APKI-IKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 264

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 265 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 324

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 325 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 368


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
          Length = 689

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score =  206 bits (525), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 454

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++ +P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 194/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   + +E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                +S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
 gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
          Length = 475

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/366 (36%), Positives = 201/366 (54%), Gaps = 15/366 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L+  DV+  A+TGSGKT AFGL L + L  E        A
Sbjct: 33  LASLGYEKMTPIQVQSLPTLLKRIDVIAQAKTGSGKTAAFGLTLLNHLKVE------FFA 86

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QV + +  L      V V    GG+    +   L++GAHIVVGTPG
Sbjct: 87  TQALVLCPTRELAEQVSQAIRRLARLLPNVKVLNLSGGMPFTPQLDSLRHGAHIVVGTPG 146

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+  H+    L++ HL  +VLDEAD MLD+GF D+I+ I+ + P  R+ L+FSAT    I
Sbjct: 147 RIQKHLDKNSLSLKHLNTLVLDEADRMLDMGFFDEIKNIIRTCPTTRQTLLFSATYPAEI 206

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252
             LA  + +D  ++ I  EN    +I+     V  +    A++N +LR+H   + ++FC+
Sbjct: 207 KNLADEFMRDPQKITI-EENHDELNIEQHFYEVNNAKDKFALLNDLLRHHKPTSTLIFCN 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++ ++ L +  F    L+G++ Q +R  A+    +    + +ATDVAARG+D+ +
Sbjct: 266 TKEQTNQVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSILVATDVAARGLDIKE 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF---REANVSVVW 369
           L  V++ EL+ +    +HR GRTGRAG KG+ VF I       AERL     E    + W
Sbjct: 326 LPAVVNYELAFDLAVHIHRIGRTGRAGHKGL-VFNI--TTPADAERLCLIEEELGRPITW 382

Query: 370 EPAPSV 375
           E +  +
Sbjct: 383 ETSTQL 388


>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 515

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 202/386 (52%), Gaps = 8/386 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + +Q+  +   L   D++  AQTG+GKT AFGL L + L  +ND      
Sbjct: 28  GIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINNL--KND-----G 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +   L + PTRELA+QV  E+  L     V      GG  + R+   L+    +++ TPG
Sbjct: 81  SIEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEKKPQVIIATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+R + L   +   VVLDE+DEMLD+GF DDIE I       R+ L+FSAT+   I
Sbjct: 141 RLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFSATMPTPI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   + I  ++  + DI  R  ++   +R++AIV ++     + AI+F   
Sbjct: 201 KHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRLIDSEMPQKAIIFTRM 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      ++ L    F+  AL G++ Q+ER  +++  +D    + +ATD+AARG+D+  +
Sbjct: 261 KKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVATDIAARGLDISGV 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   R+      S+     P
Sbjct: 321 SHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKENTKASIELYEIP 380

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGD 399
           S++   ++    IL D +   +I  D
Sbjct: 381 SIQDTMDKKDSNIL-DKILKHAISDD 405


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 192/337 (56%), Gaps = 18/337 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAPLALAI 80
           +++Q+  + P LR +DV+  AQ+G+GKT  F +A+  T+   L E           AL +
Sbjct: 47  SAIQQRAILPILRGRDVIAQAQSGTGKTATFSIAMLQTIDISLRETQ---------ALVL 97

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           +PTRELA Q+   +  L     V    CIGG SV  + R L+ G HIV GTPGR+ D IR
Sbjct: 98  SPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQHIVSGTPGRVFDMIR 157

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            + L   ++K +++DE+DE+L++GF+D I  I    P   ++++ SAT+   +  +   +
Sbjct: 158 RRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPATQVVLVSATLPHDVLEMTSKF 217

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASV 257
             D VR+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V
Sbjct: 218 MTDPVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E+ FQV ++ GE+ Q+ER   +   R G +RV I TDV ARGID+ ++ LVI
Sbjct: 276 DWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLITTDVWARGIDVQNVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L +N EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 336 NYDLPTNRENYIHRIGRSGRFGRKGVAINFVTTEDVK 372


>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 433

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 220/418 (52%), Gaps = 23/418 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +A+   GY NLT +Q+  + P +R   D+L SAQTG+GKT AF L +   +LA+N    P
Sbjct: 14  KAVKACGYKNLTPIQQQAI-PIIRSGSDLLASAQTGTGKTAAFTLPILD-ILAKNANEKP 71

Query: 72  ASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            +     AL + PTRELA QV   ++       +   V  GG S+  + + L+ G  ++V
Sbjct: 72  TTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKVGVDVLV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +H+  + +++SH+K + LDEAD MLDLGF  DI+ ++++  +K + LMFSAT 
Sbjct: 132 ATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQKHQTLMFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  + TLAK        + I+ +N     +  +   V+ + ++  +  ++     K  +V
Sbjct: 192 SNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWVSETRKNELLSELIGVKNWKQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ S +   K L     +     G+ +Q  R+ A+Q   +G  RV +ATDVAARG+D
Sbjct: 252 FAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSVRVLVATDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ----------RRAER 358
           +PDL  V++  L    E+ +HR GRT RAG+ G +V  V P++ Q          R+ ER
Sbjct: 312 IPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQFLDNIETLIGRKFER 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +         +E   S+    E+ + + L+   +      +  KM+++  AK+ P  I
Sbjct: 372 IVYPG-----YEIDSSLPGYYEQSSDKPLKKSRY--KATQERNKMLEIQRAKNTPAAI 422


>gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 417

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 7/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY + T VQE  +   L  +D+L  AQTG+GKT  F       LL +
Sbjct: 7   NLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGF-TLPLLELLLK 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     +   L + PTRELA QVG  +           AV  GGV +H + + L+NG 
Sbjct: 66  KPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQTLKNGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+    +N+  +   VLDEAD MLD+GF  DI  ++   P KR+ L+F
Sbjct: 126 DILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKRQNLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I TL  +  K+   V +A  N     ++ R ++V    +   +  ++  H  K
Sbjct: 186 SATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDCKRKTALLGKLISEHKWK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L++      A+ G  SQ  R+ AL   + G  +V +ATD+AA
Sbjct: 246 QVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR- 361
           RG+D+  L  VI+ EL +  E+ +HR GRTGRAG +G ++ ++     +  +  E+L + 
Sbjct: 306 RGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLKGIEKLIKK 365

Query: 362 --EANVSVVWEPAPSVEA 377
             E  V   +EP P+++A
Sbjct: 366 TLEREVVEGFEPDPTIKA 383


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 469

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 198/361 (54%), Gaps = 13/361 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  GY  +T +Q   L   L+ KDVL  A+TGSGKT AF L L   L  ++      
Sbjct: 26  ENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDVKSLNVQ-- 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV  E+  L      V V    GG+ +  +   L+ GAHIVVGT
Sbjct: 84  ----GLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGAHIVVGT 139

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+  H+  + L+++ LK  VLDEAD MLD+GF D +  I    P++R+ L+FSAT   
Sbjct: 140 PGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLFSATYPE 199

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAI 248
            I  L+  +Q++ + V + S    HS +        L +++    A++ +L+++  ++ +
Sbjct: 200 DIQRLSTEFQRNPLSVRVEST---HSAVQIEQRFFELPNQEAKFPALLKLLQHYQPRSTV 256

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +    +    L+   +  +AL+G+L Q+ER   +    +    + +ATDVAARG+
Sbjct: 257 IFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATDVAARGL 316

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L+ V++ +L+ +PE  +HR GRTGRAG+ G+++ +   +   R  ++        V
Sbjct: 317 DIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDYQQSQAV 376

Query: 369 W 369
           W
Sbjct: 377 W 377


>gi|221108213|ref|XP_002168355.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 480

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 197/337 (58%), Gaps = 10/337 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G    T +Q + +   L  +D + SA+TGSGKT AF L +   L    D +       
Sbjct: 20  EMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQKL--SEDPY----GIF 73

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA+Q+  + + L    G+  AV IGG+ + ++  +L N  H+V+ TPGRL 
Sbjct: 74  ALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSNQPHVVIATPGRLA 133

Query: 137 DHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            HI  G   +++ +K +VLDEAD +L+  F +D+E I D+  KKR+ L+FSATI+ AI  
Sbjct: 134 SHITSGTKFSLNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQTLLFSATITDAINH 193

Query: 196 LAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           L K    +     + SE+     +++D R +L+    +D  +V++L+    K+ I+F  T
Sbjct: 194 L-KEVAHNPFCYEVKSEDDFATVTELDQRYLLIPSQVKDCYLVHLLQNFSEKSVIIFTQT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
             S    + +L +  F+   L   +SQ+ER ++L   R G  ++ +ATDVA+RG+D+P +
Sbjct: 253 CRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKILVATDVASRGLDIPLV 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +LVI+  + ++P++ +HR GRT RAGR GMS+ ++ Q
Sbjct: 313 QLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQ 349


>gi|149370359|ref|ZP_01890048.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355910|gb|EDM44467.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 445

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 10/364 (2%)

Query: 24  TSVQEAILNPDLREKDVLVS-AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           T +Q  I+   L +KD +V  A+TG+GKT AFGL L   +   N+         A+ +AP
Sbjct: 27  TDIQTKIIPVVLNQKDDVVGIAKTGTGKTAAFGLPLLQQIDVNNNDIQ------AIVLAP 80

Query: 83  TRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TREL  Q+ + L ++   K  + +A   GGV +  +   L++  HIVV TPGRL D +  
Sbjct: 81  TRELGQQIYKNLSDFAKFKPEISIASTCGGVPIKPQIERLKDPTHIVVATPGRLIDLLER 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY- 200
           K + IS+   +V+DEADEM+ +  ++ ++ I+   PKKRR  +F+AT+S  I  L +NY 
Sbjct: 141 KAVAISNASYLVIDEADEMVTI-LKEGLDKIVKGLPKKRRTFLFTATLSGEIKQLVQNYL 199

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
            K    + +      H  ID++ V+V   ++ + +++ L     +  I+FC T+A+V++ 
Sbjct: 200 SKKVSHIEVDMATLGHQGIDHQYVVVNPEEKLDVLMHFLSSKEGQRGIIFCKTKAAVNKL 259

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            K LA H F   A+ G LSQ  R   +   R G   + IATD+AARGID+ ++  V+   
Sbjct: 260 AKKLAIHKFSSGAIHGSLSQPIRDRIMDQFRAGHINILIATDLAARGIDVKEISYVVQYH 319

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           L    +  +HRSGRT RAG KG+S+ VI Q   +    L  E  ++    P     +I E
Sbjct: 320 LPDTFDAYVHRSGRTARAGAKGLSLSVIQQEEVQDMPELEDELGITFSEMPKADALSIEE 379

Query: 381 RDAQ 384
            +A+
Sbjct: 380 NNAK 383


>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
          Length = 455

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 192/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +   + + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155]
 gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185]
 gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195]
 gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 458

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 10  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 69  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338


>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
 gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
          Length = 435

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 124/334 (37%), Positives = 180/334 (53%), Gaps = 2/334 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++RGY   T +Q   +   L  +DVL +AQTG+GKT AF L +   L       +
Sbjct: 12  LAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPILQRLAFVG--LA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELA QV   +E       +  AV  GGV    +   L  G   +V 
Sbjct: 70  KAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAALARGVDTLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   ++ S L+ +VLDEAD MLD+GF  DI  I+D  P+ R+ LMFSAT S
Sbjct: 130 TPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQTLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  Y  D V V +A+ N     +   A  V    + + ++++L+YH     ++F
Sbjct: 190 NEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKYHQWSQVLIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   +R TK L    F+   + G  SQ  R  AL   + G+ ++ +ATD+AARG+D+
Sbjct: 250 CRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L  V++ +L   P++ +HR GRTGRAG  G S
Sbjct: 310 NQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRS 343


>gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
 gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
          Length = 450

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++ +P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKINPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 229/430 (53%), Gaps = 23/430 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   T +Q   +   ++ KD++  AQTG+GKT AFG+ L   + L E  +         
Sbjct: 2   GFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNEGIQ--------G 53

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELAVQV  EL  +    GV      GG  + R+ R L+   HI+  TPGRL D
Sbjct: 54  LVLAPTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLID 113

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K + +S++K VVLDEADEML++GF +DIE IL     +R+ L+FSAT+   I +LA
Sbjct: 114 HIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLA 173

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + ++   V + ++     +I+   + V    + + + N+L     + AIVF  T+  V
Sbjct: 174 EKFMQEPEMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKRV 233

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L +  +    + G++ Q +R   ++  ++    + +ATDVAARG+D+  +  V 
Sbjct: 234 DEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 293

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS-VVWEPAPSV 375
           + ++  +PE+ +HR GRTGRAG KG+++ FV P+ +     ++      S +  +P PS 
Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHL--KIIESVTKSKMAKKPVPSF 351

Query: 376 EAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
           + +   + Q  +     ++ I+ +E    K++ + LL   D   + A  +++    L   
Sbjct: 352 KDVVAGNQQATINK--LMEVIEKEEHADFKRVAESLLEDTDSVTLLAAAIKL----LTKG 405

Query: 432 EEITPVSLVS 441
            ++TPV L +
Sbjct: 406 PDVTPVKLTA 415


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 9   LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
           +  S      AL I PTRELA QV  E+  L ++   + VA+ IGG  + R+   LQ   
Sbjct: 69  NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 123 QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     R+++  E      I    V  + S++   +V  L      
Sbjct: 183 SATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQL-CQREG 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 242 SIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++ FV PQ+ +R      +E  
Sbjct: 302 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALADKEGE 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           ++       SV+  ++R+++++ + P  L +  G +K
Sbjct: 362 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 393


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 185/337 (54%), Gaps = 5/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +A+  +GY   T++Q   +   L  +D+L  AQTG+GKT AFGL +   L L   +    
Sbjct: 14  KAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQILGLTRGN---- 69

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA+QVG  ++    K  +   V  GGV +  +   L+ G  I+V T
Sbjct: 70  GHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLERGIDILVAT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + L+++ ++ +V DEAD MLDLGF  +I  ILD  P  RR ++FSAT +P
Sbjct: 130 PGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATYTP 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA         + I  +      +  +   V   ++   +++++        +VF 
Sbjct: 190 QIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQKQDRILVFA 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR   +R T  LA H   V AL G  SQ  R   L+  +DG+  + +ATDVAARG+D+ 
Sbjct: 250 RTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLDIS 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L LV++ ++ ++PE+ +HR GRTGRAG  G++V ++
Sbjct: 310 NLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLV 346


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 197/360 (54%), Gaps = 13/360 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F+ +   +   L ++GY  L  +Q   L   L  +DV+  A+TG GKT+AF L +   + 
Sbjct: 85  FKGLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIELMA 144

Query: 63  ----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               +  N R      P+ + +APTRELA QV  + +W+    G       GG     + 
Sbjct: 145 KMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYREQE 204

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  IV+GTPGR+ DH+  K L ++ LK  VLDEADEML++GF DD+E IL SS  
Sbjct: 205 MGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETILKSS-G 263

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAI 235
             + L+FSAT+   +  ++K + K +   V++  + +Q +   + +  +    SDR + +
Sbjct: 264 DVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVDLV 323

Query: 236 VNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRD 292
            +++R    G    IVFC T+         L + + +   AL G++SQ +R   L + R+
Sbjct: 324 CDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLFRE 383

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            + +V +ATDVAARG+D+  +ELVI  E   + E  +HRSGRTGRAG  G+SV    P+N
Sbjct: 384 DKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRN 443


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 191/349 (54%), Gaps = 11/349 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + + L + G  + T +Q A L   L   ++   AQTG+GKT AF +A    
Sbjct: 11  FTDLPIHDAVLDGLDDAGLSHCTPIQAATLPRTLAGGNIAGEAQTGTGKTAAFVVATLHH 70

Query: 62  LLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L++   E D    A  P A+ +APTRELA+Q+  + E + A TG+  A   GG     +R
Sbjct: 71  LMSHPVEED----AVGPWAIMLAPTRELALQIYNDAEQIGAYTGLKFAAVYGGTGYESQR 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  +++GTPGR+ D  + K  N+ +++ VVLDEAD M DLGF  DI F+L   P 
Sbjct: 127 KQLQEGVDVIIGTPGRIIDFHKQKVFNLRNIEVVVLDEADRMFDLGFISDIRFLLRRMPP 186

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R  L+FSAT+S  +  LA  +  D  RV + SE R    +      +A  D+ + +V
Sbjct: 187 ADQRLNLLFSATLSYRVMELAWEHMGDPPRVAVESEQRTADHVRQTLYHIAKEDKTSFVV 246

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L++   +  ++F +T+ +  R    L  +  +   +SG++ Q +R   L+  R G   
Sbjct: 247 GLLQHIDPRRTLIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRTGELP 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V + TDVAARG+ +  +  VI+ +L  +PE+ +HR GRT RAG  G ++
Sbjct: 307 VLVGTDVAARGLHIDAVSHVINFDLPHDPEDYVHRIGRTARAGESGDAI 355


>gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
 gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
          Length = 478

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 200/360 (55%), Gaps = 7/360 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 354


>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
 gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
          Length = 428

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 126/347 (36%), Positives = 198/347 (57%), Gaps = 9/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61
           N+ Q + +A+++ G+ + T +Q   L   L  +D++  AQTG+GKT AF +    ++  T
Sbjct: 17  NLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQSMLET 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + + DRF  AS P  LA+APTRELA+Q+ ++ E L   TG  V   +GG++  ++R  L
Sbjct: 77  PIPKEDRF--ASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRDQL 134

Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179
           QN    I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+   +PK+
Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKE 194

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT +  +  LA  + K A  V I  E +    +     LV   ++   +VN 
Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVYLVGEDEKLPVLVNY 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + AIVF + R       + L     +V  +SGE++Q +R   L+  ++G  +V 
Sbjct: 255 LQRPEVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNGSIQVL 314

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+SV
Sbjct: 315 VATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSV 361


>gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
 gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
          Length = 444

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/391 (34%), Positives = 203/391 (51%), Gaps = 28/391 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-AL 78
           Y  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L        P +  + AL
Sbjct: 6   YQAMTLIQAQSLPLILAGQDLIAQAKTGSGKTAAFGLGIVHKL-------DPGAYNIQAL 58

Query: 79  AIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTREL+ QV  EL  L    G   V+ +C GG  +  +   L+ GAHIVVGTPGRL 
Sbjct: 59  VLCPTRELSEQVANELRRLARAIGNIKVITLC-GGTPIRPQIESLKFGAHIVVGTPGRLM 117

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    ++ S L  +VLDEAD MLD+GF DD+  I+ S P  R+  +FSAT +  I   
Sbjct: 118 DHIERDTVDFSGLHTLVLDEADRMLDMGFYDDVTKIVGSCPGTRQTQLFSATYADDIRKA 177

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  + +    V + S +   S I+ R   +    R +A+  +L +   ++ + FC+T+A 
Sbjct: 178 SARFLRKPKEVKVESVH-DASQIEQRFYEIDADRRHSAVAQLLEHFRPESTLAFCNTKAQ 236

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L    F  +AL G+L Q++R + L    +    V +ATDVAARG+D+  L+ V
Sbjct: 237 CRELAAYLESRGFSALALHGDLEQRDREDVLIQFANRSCSVLVATDVAARGLDIDALDAV 296

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW------E 370
           I+ E++ +PE  +HR GRTGR   KG+++ +      R A ++ +  N  + W      +
Sbjct: 297 INVEITPDPEVHIHRIGRTGRGDAKGLALSLCAPYEMRWANQIEQYQNQPISWANPKTLK 356

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           PAP             L+ P+    IQG +K
Sbjct: 357 PAPGGR----------LRAPMVTLCIQGGKK 377


>gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 501

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 186/352 (52%), Gaps = 5/352 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  G      +Q A L   L  +D+L   QTGSGKT+AFGLAL S L     R  P  
Sbjct: 68  ALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLSRL--AGGRAKP-H 124

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA+QV   L       G+     +GG S  R+   L+ G  +++ TPG
Sbjct: 125 MPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRRGVDLLIATPG 184

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+R    ++S +    LDEAD+M D+GF   +  ILD +P+  + L+FSAT+   +
Sbjct: 185 RLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRLLFSATLDGDV 244

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L + Y  D V  ++A      + +++  + V+  D+ + +  +    G    I+F  T
Sbjct: 245 DKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAEDKQSVVTEVAAREG--RTIMFVRT 302

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V R  K L        AL G  +Q  R+  L   R+G   V IATDVAARGI + D+
Sbjct: 303 KHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIATDVAARGIHVDDV 362

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
            LV+H +  ++P++ LHR+GRT RAG+ G  V ++  + +R  + L   A +
Sbjct: 363 SLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGLTSRAGI 414


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 186/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  QGVQSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       ID    +V   ++ +   N L  H    AIVF 
Sbjct: 188 AIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPDLAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 192/365 (52%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I         I++        ++ + + ++       + I+FC T
Sbjct: 192 ERLSRTYMNAPTHIEIKVAGITTDKIEHTLFEAIEDEKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +       +     P
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEEYIGFEIPKAIGP 371

Query: 374 SVEAI 378
           S E +
Sbjct: 372 SKEEV 376


>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
           jacchus]
          Length = 643

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379
           +       ++++A   F+   V    +   + S++AIR
Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G +    +QE  L   L  KDV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 92  EALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 151

Query: 69  FSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P S   AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 152 AAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGV 211

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    K L++ H+K++VLDEADEMLDLGF  D+E I++  P +R+ ++F
Sbjct: 212 DVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLF 271

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+  A+  LA+ Y      ++  S + + + +       YRA  +   D+   +  IL
Sbjct: 272 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNM---DKPEMVARIL 328

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V +
Sbjct: 329 QADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 388

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++
Sbjct: 389 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 437


>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 538

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 194/336 (57%), Gaps = 13/336 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G    T VQ+  +   L+ KDV+  A+TG+GKT+AF L +   +        P  A
Sbjct: 27  LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHI-------DPKRA 79

Query: 75  -PLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P AL +APTRELA+Q+  E + L A    G+ +    GG  V ++ R L+ G  +++GT
Sbjct: 80  YPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGT 139

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   L +  +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+  
Sbjct: 140 PGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPA 199

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LA NY    V + I   +    +   + V+V  +DR   +A+  ++  H    AI+
Sbjct: 200 GVKQLAGNYMNQPVDIVIKGASPIPLE-QIQQVVVECTDRSKQDALRAMIEEHNPFLAII 258

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   +   + L  H +Q   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D
Sbjct: 259 FCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLD 318

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + ++  + E+ +HR GRTGRAG  GM++
Sbjct: 319 VEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAI 354


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L+++D+L  AQTG+GKT +F L + +  L E  R + A 
Sbjct: 20  AIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPMLT--LLEKGR-ARAR 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +       + VA+ IGGVS  ++ R L+ GA +++ TPG
Sbjct: 77  IPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQDRKLERGADVLIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  +IE I   +P  R+ L FSAT++P I
Sbjct: 137 RLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPFTRQTLFFSATMAPEI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-AIVNILRYHGA---KNAIV 249
           T L K +    V + I   +     I  R V       D  AI+  L +      KNAI+
Sbjct: 197 TKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILRELIHKEGDELKNAII 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  +S   + L +H F V  L G++ Q  R++ L   +D +  + +A+DVA+RG+D
Sbjct: 257 FCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNKLTLLVASDVASRGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +
Sbjct: 317 IPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTK 357


>gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 469

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 21  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 80  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 134 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 194 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 251 PESAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 311 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 349


>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 450

 Score =  206 bits (525), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 423

 Score =  206 bits (524), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 178/339 (52%), Gaps = 1/339 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL +   L+   D   P  
Sbjct: 20  TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLIETKDNVIPNP 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   +      T + V V  GGVS+  +  +L+ GA I+V TP
Sbjct: 80  KLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDNLRGGADILVATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + +S  + +VLDEAD MLD+GF  DI+ IL      R+ L FSAT    
Sbjct: 140 GRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDVRQTLFFSATFDNK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    +    + +  +N     +      V  S +   +  ++     +  +VF  
Sbjct: 200 IKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARGID+  
Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           LE V++ ++    E+ +HR GRTGRAG  G+++ ++ Q+
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQD 358


>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 502

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 186/335 (55%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +    + AS
Sbjct: 23  AINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPILHLLSKKPRAEAAAS 82

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L ++PTRELA Q+   ++       +   V  GGV+ + +   L+    I+V TPG
Sbjct: 83  RPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIARLKKPLDILVATPG 142

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FSAT S  I
Sbjct: 143 RLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQRQNLLFSATFSEEI 202

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    +V  + + + + +++++H  K  +VF  T
Sbjct: 203 KALADGLLHNPGFVEVARRNTASELVEQTVHMVPQAHKRDLVTHLIKHHDWKQVLVFTRT 262

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +   Q  A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+  L
Sbjct: 263 KHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVLVATDIAARGLDIDQL 322

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V ++
Sbjct: 323 PQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLV 357


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 187/346 (54%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G V+   +QE  L   L   DV+  A+TG+GKT+ FGL L   ++   D    R
Sbjct: 47  EALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVIVPADVEAGR 106

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P     +P AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 107 ATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 166

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    K L++S +KA+VLDEADEMLDLGF  D+E I++  P KR+ ++F
Sbjct: 167 DVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIINYLPPKRQTMLF 226

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +   S   E    ++I          D+   +  IL+  
Sbjct: 227 SATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVFRAHNMDKPELVSRILQAE 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 287 GRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAG KG++V ++
Sbjct: 347 VAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTLV 392


>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
          Length = 450

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
           112818]
 gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
          Length = 474

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY N T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     +  I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395


>gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
 gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
          Length = 439

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 205/355 (57%), Gaps = 9/355 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        AL
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAHI+VGTPGR+ D
Sbjct: 56  VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    +++S L  +VLDEAD ML++GF++ +E I+ ++  +R+ L+FSAT   +I  +A
Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAAAERQTLLFSATYPASIEQIA 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  V
Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V 
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++  EP+
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348


>gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
          Length = 439

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 206/355 (58%), Gaps = 9/355 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        AL
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAHI+VGTPGR+ D
Sbjct: 56  VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT   +I  +A
Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIA 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  V
Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V 
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++  EP+
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348


>gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 500

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 190/353 (53%), Gaps = 8/353 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L   +      
Sbjct: 16  EQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILEQLDVNH------ 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL +APTRELA+QV   +       G+ +    GG S+ R+   L+ G H+VVGTP
Sbjct: 70  KAVQALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLKRGVHMVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L +  +K  VLDEADEML +GF DD+  IL  +PK+R+  +FSAT+ P+
Sbjct: 130 GRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQTALFSATMPPS 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  +   + ++   V +       + I+  A L+     +  A+  IL     + A++F 
Sbjct: 190 IRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFV 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR + +  T +L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+ 
Sbjct: 250 RTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR ++ F   N
Sbjct: 310 LLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 361


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 189/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  QSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVWKQ------ 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 69  -GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 188 AIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 308 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 349


>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
 gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
 gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
          Length = 737

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E IL  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
 gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
          Length = 439

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 206/355 (58%), Gaps = 9/355 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        AL
Sbjct: 2   GFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQ------AL 55

Query: 79  AIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAHI+VGTPGR+ D
Sbjct: 56  VLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILD 115

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT   +I  +A
Sbjct: 116 HLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQIA 175

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  V
Sbjct: 176 QSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKREV 235

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V 
Sbjct: 236 QNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVF 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++  EP+
Sbjct: 296 NYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 348


>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
           leucogenys]
          Length = 643

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379
           +       ++++A   F+   V    +   + S++AIR
Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
          Length = 643

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379
           +       ++++A   F+   V    +   + S++AIR
Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532


>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
 gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
          Length = 449

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 188/339 (55%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL +  +   T +Q   L   L  +D++  A TGSGKT AF L +   L      +   
Sbjct: 27  EALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQKL------WDDP 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  +APTRELA Q+ ++ E L +  GV  AV +GG  +  ++  L    HIVV TP
Sbjct: 81  KGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVALAKRPHIVVATP 140

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG N+  +K +VLDEAD +LD+ F   I+ IL   PK+R   +FSAT++ 
Sbjct: 141 GRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKERTTYLFSATMTT 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + VRV + ++ +    +    +L+ L ++D  +V +       + I+F 
Sbjct: 201 KVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYLLMPLKEKDTLLVYLANTLAQNSIIIFT 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T    +R + +L    F  V L G+LSQ +R  AL   + G  +V +ATDVA+RG+D+P
Sbjct: 261 RTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRKVLVATDVASRGLDIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 321 SVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQ 359


>gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus
           caballus]
          Length = 738

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix
           jacchus]
          Length = 711

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E GY   T +Q   +   L +KDVL +AQTG+GKT  F L L   L   N +  
Sbjct: 12  ILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNFK-D 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QV + +E          AV  GGV ++ ++  L+ G  I++ 
Sbjct: 71  KKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I    L++S ++ +VLDEAD MLD+GF +DI+ IL   PK+R+ L+FSAT S
Sbjct: 131 TPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATFS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    K  V V ++  N     ++     V    +   +++++  +  +  +VF
Sbjct: 191 NEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ ++ L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AARGID+
Sbjct: 251 TRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ EL +  E+ +HR GRTGRAG  G+++ ++
Sbjct: 311 EQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLV 348


>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
 gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
          Length = 734

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 185/351 (52%), Gaps = 16/351 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
             EAL   G      +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D   
Sbjct: 70  TAEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA 129

Query: 68  -RFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R  P +   AP AL + PTREL  QV  +L        V V    GG +   +   L+N
Sbjct: 130 GRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAYEPQVEALKN 189

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGRL D    K LN+ H+KA+VLDEADEMLDLGF  D+E I+   P KR+ +
Sbjct: 190 GVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIGMLPAKRQTM 249

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVN 237
           +FSAT+  A+  LA+ Y      +   + + + + +       YRA  +   D+   +  
Sbjct: 250 LFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNM---DKPEMVAR 306

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G   A++FC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V
Sbjct: 307 ILQAEGRGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDV 366

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++
Sbjct: 367 LVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 417


>gi|169346889|ref|ZP_02865837.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
 gi|169296948|gb|EDS79072.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
          Length = 478

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 202/374 (54%), Gaps = 6/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V      G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCVAIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L  +  +
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCLYAYHPE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 241 SAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +      
Sbjct: 301 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENVEEYIGY 360

Query: 366 SVVWEPAPSVEAIR 379
            +     PS E ++
Sbjct: 361 EIKKVSLPSDEEVK 374


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 198/384 (51%), Gaps = 5/384 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +   + + G+   T +QE  +   L  KDVL  AQTG+GKT AFGL L + LL + 
Sbjct: 9   LSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLLNKLLDQE 68

Query: 67  DRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               P S   LAL + PTRELA QV   L    +   + +    GG S++ + ++L+ G 
Sbjct: 69  ASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQTQNLRQGC 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+  K +N+     +VLDEAD MLD+GF  DI+ IL     +R+ L F
Sbjct: 129 DVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLNPERQTLFF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I T+A     + V V +   N     +      V    +   +  ++     +
Sbjct: 189 SATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKVKQMVYPVDKKRKAELLAYLIGSRNWQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L     +  +++G+ SQ  R  AL   + G  R  IATDVAA
Sbjct: 249 QVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRALIATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EA 363
           RG+D+  LE V++ ++    E+ +HR GRTGRAG++G++V ++ ++ +   E + R  +A
Sbjct: 309 RGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLEAIERLLDA 368

Query: 364 NVSVVWEPA--PSVEAIRERDAQR 385
            +   W     PS+E   E + +R
Sbjct: 369 RLPQEWLQGFEPSIEEPTENERER 392


>gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 201/364 (55%), Gaps = 5/364 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AFGL + S +LA  
Sbjct: 25  LPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQILALG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+   +  +     +   +  GGVS  ++ + +  G  
Sbjct: 85  DKRCPKTAR-ALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMAAGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R K +++S  + ++LDEAD MLD+GF  D++ I     ++R+  +FS
Sbjct: 144 VLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTALFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK    D V++ +A +     +I  +   V  S++ N +  +L      +
Sbjct: 204 ATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCVPTSEKKNVLSKLLTNPAFDS 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T  LA++ + V  + G  SQ  R +AL+  R+   ++ +ATD+AAR
Sbjct: 264 VIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILVATDIAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERLFRE 362
           GID+P +  VI+ +L    E+ +HR GRTGR G  G ++ +  + ++R      ERL R 
Sbjct: 324 GIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRAVERLIRM 383

Query: 363 ANVS 366
             VS
Sbjct: 384 KLVS 387


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 196/350 (56%), Gaps = 10/350 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S  G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L       
Sbjct: 8   NLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPLL------ 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-- 123
            ++         L +APTRELAVQV  EL  +    GV      GG  + R+ R L+   
Sbjct: 62  -EKIDINEGIQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQIRALKKDR 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HI+  TPGRL DHI  K + ++ +K  VLDEADEML++GF +DIE IL   P++R+ L
Sbjct: 121 GPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEVPEQRQTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I +LA+ +  +   V I ++     +I+   + V    + + + ++L    
Sbjct: 181 LFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLCSLLDIQS 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF  T+  V    + L +  +    + G++ Q +R   ++  ++    + +ATDV
Sbjct: 241 PELAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTIDIMVATDV 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           AARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG++V FV P+ +
Sbjct: 301 AARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREI 350


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 193/344 (56%), Gaps = 13/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 15  ETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPLIEKVVGK------- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 68  EGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    ++ ++LDEADEM+++GF DD+ +I+D  P + R+ ++FSAT+  
Sbjct: 128 GRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPSENRQTMLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           AI  L + + K + R+ I + N + SD  ID    +V   ++ +   N L  H  + AIV
Sbjct: 188 AIQELVQKFMK-SPRI-IKTMNNEISDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  V + ++  + E+  HR GRTGRAG+ G++V FV P  M
Sbjct: 306 ISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEM 349


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 13/371 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I  AL    Y + T VQ+ ++   L  +D++V AQTGSGKT AFG+ +   +  AEN   
Sbjct: 15  ITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIELIDWAEN--- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P  L + PTRELAVQV  ++  +     +      G     ++R +L+   HIVV
Sbjct: 72  ----KPQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQKTHIVV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI  + L++  ++ +++DEADEML+ GF  D+E IL   PK R  ++FSAT 
Sbjct: 128 GTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTMVFSATF 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  L + +     RV I S     S I++R + V  +++   + +I       + ++
Sbjct: 188 PQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVHRNEKLAVLQDITVVENPDSCMI 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+ +V      L +  +    L G L Q++R   +   + G  R  +ATDVAARGID
Sbjct: 248 FCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++ELVI+ ++    E+ +HR+GRTGRAG++G ++ +    M R+ ERL       V +
Sbjct: 308 VDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITL----MTRQEERLIGAIESYVQF 363

Query: 370 EPAPSVEAIRE 380
           E  P ++A  E
Sbjct: 364 E-IPMIDAPTE 373


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 159/543 (29%), Positives = 261/543 (48%), Gaps = 60/543 (11%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L  +N  
Sbjct: 60  QSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL-TDNKE 118

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +       L + PTRELA QV    +   +++     V I GG     +   L+    +
Sbjct: 119 LNAK----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKVDV 174

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DHIR     I  +  +VLDEADEML++GF +DIE+I+D  P+ ++M++FSA
Sbjct: 175 VVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLFSA 234

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +AK Y  D   + I S  ++   I  + + V    + +A+  IL  +  +  
Sbjct: 235 TMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDALKRILELNN-EGV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAARG
Sbjct: 294 IIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAARG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360
           +D+  ++LV++ +   + E   HR GRTGRAGR G ++  +        +N++       
Sbjct: 354 LDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLENSTRTKI 413

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEK 415
            E N+       PS + I E+  ++++ D     S+  DE +     ++DVL   +  EK
Sbjct: 414 EEINI-------PSNKIINEKRMEKLI-DSFNESSLAKDENEENKALIIDVL--DNLKEK 463

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFK-----------------V 455
            +     I  A          ++LV G   F    DDS   K                  
Sbjct: 464 YSMDDSNIAMAA---------INLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMR 514

Query: 456 GGGSRDNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
               R+N++  S+  +  + G         ++  +C S+ IN +SIG I++  D + V++
Sbjct: 515 NSSRRNNYQNDSFETYKFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDL 574

Query: 514 SAD 516
             D
Sbjct: 575 PRD 577


>gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1]
 gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 458

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 10  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 69  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 193/346 (55%), Gaps = 11/346 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +RG+   + +QE  +   L+ KDVL +AQTG+GKT  FGL +   L+ E    S  
Sbjct: 14  KAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLM-EGQPVS-G 71

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +   AL + PTRELA QV   +    E+L  KT    AV  GGV ++ +   L+ G  ++
Sbjct: 72  NNVRALILTPTRELAAQVEESIRAFSEFLPLKT----AVVFGGVGINPQMMKLRKGVDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI  +L   P++R+ L+FSAT
Sbjct: 128 IATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQSLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  IT LAK   ++ V ++ A  N     +    V +  S +  A++ +++    +  +
Sbjct: 188 FSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWEQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L        A+ G  SQ  R+ AL   ++G  +V +ATD+AARGI
Sbjct: 248 VFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+ +L +V++ +L +   + +HR GRTGRAG  G +  FV  + +Q
Sbjct: 308 DISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQ 353


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 195/359 (54%), Gaps = 6/359 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L  +DVL  AQTG+GKT +F L + + L  E  R + A 
Sbjct: 16  AVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPMLTML--EKGR-ARAR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L I PTRELA QV         +  + VA+ IGG+S   + + L  G  +++ TPG
Sbjct: 73  MPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQDKKLDRGCDVLIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 133 RLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPFTRQTLFFSATMPPEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYH-GAKNAIVF 250
           T L + + ++ VRV +A        ++ R V     D D    + ++LR +    NAI+F
Sbjct: 193 TKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLRDLLRANEDVTNAIIF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  VS   + L +H F   AL G++ Q+ R   L   R+ + ++ +A+DVAARG+D+
Sbjct: 253 CNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKLQLLVASDVAARGLDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           P +  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +  + + +     + W
Sbjct: 313 PAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKHLDAIKKLIGTEIEW 371


>gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32]
 gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 458

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 190/339 (56%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 10  PELL-ENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 69  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+FS
Sbjct: 123 IIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I ++AK    D   V +      H  +        L D   R  A+  +L  H 
Sbjct: 183 ATFPEQIQSIAKQIMYDPSMVKVEG---NHDSLSIAQHFYHLDDDKARMQALQLLLLEHK 239

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDV
Sbjct: 240 PESAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARG+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 300 AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 187/333 (56%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+GYV+ + +QE  +   L  +DVL  AQTG+GKT AF L +   L+  +++    
Sbjct: 26  KALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQNLMKPSEKKYSK 85

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTR+LA+Q+    +   ++T V  AV  GGVS + +  +L+ G  I+V TP
Sbjct: 86  RVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEELRRGIDILVATP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    +++++++  VLDEAD MLD+GF  D++ I+   P +++ L+FSAT+   
Sbjct: 146 GRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVRKQTLLFSATMPAE 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L      +  RV +   +     ID     V   ++ + +V +L +    + +VF  
Sbjct: 206 IQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLNHEDITSTLVFTR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L ++     A+ G+ SQ  R  AL   + G  +V +ATD+AARGID+ +
Sbjct: 266 TKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQVLVATDIAARGIDIEE 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 326 LSCVINFDLPNIPETYIHRIGRTGRAGLDGRAI 358


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
 gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
          Length = 506

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 39  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97

Query: 68  --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 98  AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  FQ  AL G+
Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429


>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
          Length = 689

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 199/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  V  A   GG S   +   ++NG  I+VGTPGR
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRKLNV--ACFYGGTSYQSQINQIRNGIDILVGTPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATC 326

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492


>gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 447

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + I SE    + I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3]
 gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 479

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 31  PELL-ENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 89

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 90  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+FS
Sbjct: 144 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     ++
Sbjct: 204 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAAR
Sbjct: 264 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 324 GLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 359


>gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
 gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
          Length = 438

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 198/341 (58%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           I  AL+E G+   T +Q A L   L++KD+   AQTG+GKT+AF +A    L +T + E 
Sbjct: 20  IKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLTTPIPEG 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S   +R+ L  G  
Sbjct: 80  RQLN---QPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRKVLDKGID 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P  K R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++     
Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+ S       L+    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 EKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+S+
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISI 357


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 214/415 (51%), Gaps = 20/415 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTTLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLLVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLARELLKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRESA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A   R AQ  L     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEHGQPLKWSRAPLATA---RPAQLPLAAMTTLRIDGGKTDKLRAGDIL 403


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 125/350 (35%), Positives = 195/350 (55%), Gaps = 9/350 (2%)

Query: 4   FENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           F ++P+       +   + + TS+Q A        +DV+  A+TGSGKT+AFGL     +
Sbjct: 81  FSHLPECNSNLYEQLNSFKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCLKKI 140

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                + S    P+A+ I+PTRELA+Q+  +L+      G  VA   GGV    E+R++ 
Sbjct: 141 EDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGVR-KDEQREVL 199

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRR 181
             A+IVV TPGRL D      +++  ++ +VLDEAD MLD GF  DI+ I+   P  KR+
Sbjct: 200 KTANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVSKRQ 259

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +MF+AT  P +  LA  +    V V I    +++ R ++ I     +V   +++  +V 
Sbjct: 260 TVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQ 319

Query: 238 ILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L+ H  GA+  + FC  +   +R  + L    F+V  + G+LSQQER  +L   + G A
Sbjct: 320 LLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAA 379

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG +G ++
Sbjct: 380 TVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 429


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E L     V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T+  + 
Sbjct: 10  IEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L+ GA 
Sbjct: 68  KKLN--GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEEGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P ++++L+FS
Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A    +  V V ++  N     +      V    +   +  ++     + 
Sbjct: 186 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V +    M R  E L +
Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLQ 356


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|118463537|ref|YP_882142.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
 gi|118164824|gb|ABK65721.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
          Length = 455

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 192/365 (52%), Gaps = 4/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I +AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L   L   
Sbjct: 11  GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N R  PA  P  L +APTRELA Q+   LE L A  G+ V+   GGVS HR+   L+ G 
Sbjct: 71  NRR--PAR-PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +R + + +  ++  V+DEAD M DLGF   +  IL ++P   + L+F
Sbjct: 128 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   + +DAV  ++   N   S++ +    V  +     +V+ L   G  
Sbjct: 188 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGTG 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  + L E     V L G LSQ  R   L M   G ARV +ATD+AA
Sbjct: 247 RRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    +     L R+A +
Sbjct: 307 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMRKAGI 366

Query: 366 SVVWE 370
            V  +
Sbjct: 367 DVAPQ 371


>gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4]
 gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7]
 gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
 gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 439

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 196/341 (57%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A    L ST + EN
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ L  G  
Sbjct: 80  RQLN---QPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+    P   +R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  D V+V IA E +   +I       +  D+   ++ ++     
Sbjct: 197 FSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTLIEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATDVA
Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357


>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
           leucogenys]
          Length = 737

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
 gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii]
 gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
 gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
 gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
          Length = 737

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 411

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 185/335 (55%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E+ Y   T VQE  +   L +KD++VSAQTG+GKT A+ L +   L  + D   
Sbjct: 12  IIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPILQLLFDKQDAPK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+    +     T +   V  GG S+  ++  L+ G  I+V 
Sbjct: 72  KGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKDMLKKGIDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +N+ +++ +VLDEAD MLD+GF DD++ I    P  +++L+FSAT+ 
Sbjct: 132 TPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDGKQILLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA +  K    V ++  +     +D     V    +    +++LR     N I+F
Sbjct: 192 YKVEHLANSILKSPAYVEVSPTSSAAKGVDQVLYYVPKPKKIELCLHLLRNTIKGNVIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V +  K L  + ++V ++ G+ SQ  R  AL   + G A++ IATDVAARGID+
Sbjct: 252 RRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEAKIFIATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +++ VI+ ++ +  E  +HR GRT RAG  GM++
Sbjct: 312 KNVDAVINFDIPNVSETYVHRIGRTARAGASGMAL 346


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 210/401 (52%), Gaps = 20/401 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++P        L+       T +Q   +   L  KDV+  + TGSGKT+A+ + L
Sbjct: 1   MPSFQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+N R +      AL + PTRELAVQV   L    A   +  A+ +GG    ++ 
Sbjct: 61  IERL-AKNKRVA-----QALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I++GTPGR+ DH+    L +  ++  VLDEAD+MLD GF  +IE IL++SP+
Sbjct: 115 SALRYGAQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+M +FSAT+   I  L + Y KD V+V I  E    S I+     V    +  A+  +
Sbjct: 175 DRQMALFSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQIVYQVPRGKKVEALCTL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       +++F  T+  V R  + L+   F V    G+ SQ+ R + L   R G+ ++ 
Sbjct: 235 LASTQGDISLIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQML 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RR 355
           +ATDVAARG+D+  +  VI+ EL  + E   HR GRTGR GR G +V  ++P +M   RR
Sbjct: 295 LATDVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDMSKWRR 354

Query: 356 AERLFREA---------NVSVVWEPAPSVEAIRERDAQRIL 387
             R F +          + + +  P    E  +ERD++++L
Sbjct: 355 MSRSFGQPVAVQKMVLNDEAALARPMVMSEGKQERDSEQVL 395


>gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis]
 gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis]
          Length = 436

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   + P L+ +D +  A+TGSGKT AF L +   L   +D +       A+ + PT
Sbjct: 31  TEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLC--DDPY----GIFAVVLTPT 84

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK- 142
           RELA Q+  + + L    G+  AV +GG+ + ++   L N  H+V+ TPGRL DHI+   
Sbjct: 85  RELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPHVVIATPGRLADHIKSTD 144

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            LN+  ++ +VLDEAD +LD  F DD++ I D+ P+KR+ L+FSAT++  +  L K    
Sbjct: 145 TLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLFSATLTDTMGELQKMSGS 204

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFT 261
                 + S+    +++D R +L     RD  +V++LR +   ++ IVF  T  +     
Sbjct: 205 QPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLRENDDNQSVIVFTHTCKNCQVLV 264

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            +  +     V L   LSQ ER  AL   + G  ++ +ATDVA+RG+D+P +ELV+++ +
Sbjct: 265 SMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNI 324

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
            ++P++ +HR GRT RAGR GM++ ++ Q    R +++  + N  +
Sbjct: 325 PADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKINTKL 370


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 506

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 39  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97

Query: 68  --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 98  AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  FQ  AL G+
Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 194/343 (56%), Gaps = 10/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q A +   +  +D++  AQTG+GKT AF L L +       R  
Sbjct: 72  ILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLA-------RMD 124

Query: 71  PAS-APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P   +P  L +APTRELAVQV        A    + V    GG     +   L+ G  +V
Sbjct: 125 PDQRSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKRGIQVV 184

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+I++  PK+R++++FSAT
Sbjct: 185 VGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVVLFSAT 244

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  ++ NY  +   + I  +    S I  R ++V    +  A+  +L     +  I
Sbjct: 245 MPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPHKLEALNRVLEAETGEGVI 304

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+A      + L      V  L+G+++Q +R   ++ +R G   + +ATDVAARG+
Sbjct: 305 IFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVATDVAARGL 364

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           D+  + LVI+ ++  + E  +HR GRTGRAGR G ++ F+ P+
Sbjct: 365 DVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPR 407


>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
           troglodytes]
          Length = 737

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
           troglodytes]
          Length = 643

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 221/398 (55%), Gaps = 26/398 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 QN------MQRRAERLFREANVSVVWE--PAPSVEAIR 379
           +       ++++A   F+   V    +   + S++AIR
Sbjct: 495 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIR 532


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 148/516 (28%), Positives = 258/516 (50%), Gaps = 27/516 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF L   S +        PA+
Sbjct: 58  ALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMAN-----LPAT 112

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L +APTRELA+QV        A      V    GG +   +   L+ GA +VVGT
Sbjct: 113 KDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVVGT 172

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S+L+ +VLDEADEML +GF DD+E IL  +P+ +++ +FSAT+  
Sbjct: 173 PGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVALFSATMPG 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +AK Y  +   +++ ++     +   R + V    + +A+  IL        I F 
Sbjct: 233 QIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVEDYDGVIAFV 292

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       L    ++  A++G++ QQ+R   ++ +R G   V +ATDVAARG+D+ 
Sbjct: 293 RTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAARGLDVE 352

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            + LV++ ++  + E+ +HR GRTGRAGR G ++ F+ P+   + R  E+  R+    + 
Sbjct: 353 RISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVEQMH 412

Query: 369 WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
              A ++  +R  + A +I +      ++   E  +   L++ ++ E             
Sbjct: 413 LPSADTINNLRLSKFADQITE------TLGSQELSVFRELISTYEQEHDVTAAEIAAALA 466

Query: 428 LCAP-------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
             A        +++        R+R +D    F   G +R   +G++ + ++VG +Q+  
Sbjct: 467 YMAQGGESLLVKDLPAAPEYQKRERAKD---GFGSRGPTRTLTEGNATYRIAVGRRQRVM 523

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              ++  +    G++   IG I ++ D T VE+ A+
Sbjct: 524 PGSIVGAIANEGGLSSSQIGGIDIRADHTLVELPAE 559


>gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta]
 gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
           jacchus]
          Length = 737

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
          Length = 432

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     +++ W+  P   +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQITLNWQTPPVNSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
          Length = 734

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 326

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492


>gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
 gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
          Length = 460

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 210/366 (57%), Gaps = 10/366 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  
Sbjct: 13  PELLAN-LETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRF 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R        AL + PTRELA QV  ++  L  A   + V    GG+ +  +   L++GAH
Sbjct: 72  RVQ------ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FS
Sbjct: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  +A++   +A+ + + + +   S   Y   +   + RD A+  +L +H   +
Sbjct: 186 ATYPTSIEQIAQSVTHNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAAR
Sbjct: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +++
Sbjct: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365

Query: 367 VVWEPA 372
           +  EP+
Sbjct: 366 I--EPS 369


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
 gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 161/556 (28%), Positives = 268/556 (48%), Gaps = 40/556 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +Q+  +   +   DVL  AQTGSGKT AF L L   +  +        
Sbjct: 21  ALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD------LK 74

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           AP  L +APTRELAVQV   + ++    + V V    GG     + R L+ G  +VVGTP
Sbjct: 75  APQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRALRQGPQVVVGTP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P + +  +FSAT+   
Sbjct: 135 GRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALFSATMPEP 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + + K+   + I +      DI      V    ++ A+V  L       AI+F  
Sbjct: 195 IRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFDAAIIFVR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  
Sbjct: 255 TKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVDR 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     
Sbjct: 315 ISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKLTIPEVEL 374

Query: 373 PSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGFLR 422
           P  + + ER     A++I Q     +S   D+ +    LL K  P      E +AA  L+
Sbjct: 375 PDSQLLSERRQAKFAEKIQQQ---FESSDLDQYR---ALLKKLSPSEDVDMETLAAALLK 428

Query: 423 I---HRAGLCAP----------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +    RA +  P           +          + F    R  + G   R +      +
Sbjct: 429 MAQGERALILPPDAPRRPRREFNDRDDRRRDRNGNGFDRAERGDRSGRRERRDVGDMEMY 488

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +   + I+ + IG I++    + +E+      + +  L R  
Sbjct: 489 RIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGSHSTIELPKGMPTEVLTHLSRAR 548

Query: 526 KLDKGIQLKYLGGEKP 541
            L+K +Q++ +G  +P
Sbjct: 549 ILNKPMQMQLIGDAQP 564


>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
           sapiens]
          Length = 448

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 192/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 24  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 84  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 137

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL  +P+ R+  +F
Sbjct: 138 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPRDRKTFLF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 198 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 258 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 318 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 362


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score =  206 bits (524), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 182/335 (54%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A +++GY   + +Q+  +   L  KDV+ +AQTG+GKT  F L L   L AEN R     
Sbjct: 15  ATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQRL-AENPRT--GK 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   +           AV  GGV ++ +   L+ G  ++V TPG
Sbjct: 72  GPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLRKGLDVLVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S  I
Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    + V+V +A+ N     +      V  S +   +  ++R +     +VF  T
Sbjct: 192 RTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDNAWDQVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 252 KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAARGLDIKQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 5/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           NI + I +AL  + Y   T +Q+  +   L  +D+L  AQTG+GKT AF + +   L   
Sbjct: 7   NISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLAKS 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+++R     A   L + PTRELA+Q+    +     T +   V  GGVS + + ++L+ 
Sbjct: 67  ADDNRRRDIKA---LILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D I    + + H++  VLDEAD MLD+GF  DI+ ++   PK+R+ L
Sbjct: 124 GVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  L+K+      RV +A  +     I+ R   V    + + +V++L+  G
Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDG 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VF  T+    R  + L     +  A+ G  SQ  R  AL   + G+ RV +ATD+
Sbjct: 244 NRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDI 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARGID+ +L++VI+ +L    E  +HR GRTGRAG  G+++    Q
Sbjct: 304 AARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQ 350


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 196/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFCPEIL-RAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L+ 
Sbjct: 65  -ENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA       ++  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANEMM---IKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 418

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 184/335 (54%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E GY + T +Q   +   L  +D+L  AQTG+GKT AF + L   L A      
Sbjct: 12  ILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLLQLLHARKTN-E 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G         TG+   V  GGV+ + +   L+ G  IVV 
Sbjct: 71  KKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTASLRKGVDIVVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + P+K++ L FSAT+ 
Sbjct: 131 TPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKKQSLFFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    K+  +V++   +     I      V   +++  +V++L+    K A+VF
Sbjct: 191 TEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLLKGEEIKTALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L +H  +  A+ G   Q  R  AL+  ++   RV +ATD+AARGID+
Sbjct: 251 TRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRVLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DLE VI+ ++S+  E  +HR GRTGRAG KG ++
Sbjct: 311 DDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTAL 345


>gi|324006198|gb|EGB75417.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
          Length = 432

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 12/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +  +   F        L + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQI--DVSLFQTQ----GLVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 351

Query: 380 ERDAQ 384
             +A+
Sbjct: 352 PLEAE 356


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 7/375 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L  +GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L   ++     
Sbjct: 70  KTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLDGRSN----- 124

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV    + +      + V    GG     +   L+ G  +VVGT
Sbjct: 125 -TPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKRGVDVVVGT 183

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++FSAT+  
Sbjct: 184 PGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLFSATMPN 243

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+K Y ++   + I +++R+   I  R++ +  + +  A+  +L     +  I+F 
Sbjct: 244 EIRRLSKRYLREPAEITIKTKDREAKRIRQRSITLQNAHKIEALNRVLEAVTGEGVIIFA 303

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A      + L      V  L+G++ Q +R   +  +R G   + +ATDVAARG+D+ 
Sbjct: 304 RTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAARGLDVD 363

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R  N S+    
Sbjct: 364 RIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQSIEPMD 423

Query: 372 APSVEAIRERDAQRI 386
            PS   I +    R+
Sbjct: 424 IPSNAEINQSRLDRL 438


>gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 540

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 195/366 (53%), Gaps = 7/366 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+   + +Q A +   L  +D++  A TG+GKT AFGL   + +       +P  
Sbjct: 28  SVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALNNI-------NPND 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L I PTRELA QV  EL       G       GG S +R+   +Q GA +VV TPG
Sbjct: 81  GVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDLIQRGASVVVATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++   L       VVLDEADEMLD+GF DDI  I    P  R+ L+FSAT+   I
Sbjct: 141 RLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   ++I      ++DI+    ++  S+RD+AI+ ++     + +IVFC T
Sbjct: 201 KLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEACQKSIVFCRT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           ++ V R + VL+   +    L G++ Q++R   ++  ++   +V +ATDVAARGI + ++
Sbjct: 261 KSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVATDVAARGIHVDNI 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             V +  +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+  +   ++     P
Sbjct: 321 SHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKTKVGTTMTHAFVP 380

Query: 374 SVEAIR 379
           S   +R
Sbjct: 381 SKNDLR 386


>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 84  LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 143

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 144 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGR 201

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 202 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 261

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 262 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 321

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 322 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 379

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 380 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G +    +QE  L   L  KDV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 49  EALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 108

Query: 69  FSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P S   AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 109 AAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    K L++ H+K++VLDEADEMLDLGF  D+E I++  P +R+ ++F
Sbjct: 169 DVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+  A+  LA+ Y      ++  S + + + +       YRA  +   D+   +  IL
Sbjct: 229 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNM---DKPEMVARIL 285

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V +
Sbjct: 286 QADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 345

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++
Sbjct: 346 CTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 394


>gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
 gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
          Length = 409

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 193/341 (56%), Gaps = 8/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---END 67
           I   ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + + + LL    E +
Sbjct: 38  IMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCNPLEGE 97

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAH 126
           RF   + P A+ IAPTREL +Q+  + E L   TG+     IGG    ++ + + +    
Sbjct: 98  RF--LAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQKVSRRVTD 155

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           ++V TPGRL D +  + L +  ++ +VLDEAD MLD+GF   ++ I+ S+P+K  R+ L+
Sbjct: 156 LIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRKEDRQTLL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +P I  LA+ +  D V + I  ++     +D +  LVA  +R   ++N+LR   A
Sbjct: 216 FSATFTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQKVYLVASHERMRVLLNVLRSDEA 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVF + R  V    + L +       LSGE++Q +R+  L   +DG   V +ATDVA
Sbjct: 276 TSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGTISVLVATDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            RGI +  +  V++  L  +PE+ +HR GRTGRAG  G+S+
Sbjct: 336 GRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISI 376


>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 532

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 38/390 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------- 63
           AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L                 
Sbjct: 50  ALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKAQASQP 109

Query: 64  --------AENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVC 108
                       R  P + P  L + PTRELA+QV       G+ L+ L   +       
Sbjct: 110 REPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS------I 163

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF DD
Sbjct: 164 LGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDD 223

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           I+ I+  +P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I      V  
Sbjct: 224 IDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVDD 283

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 284 RDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRTI 343

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 344 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGVAVSL 403

Query: 348 I---PQNMQRRAERLFR---EANVSVVWEP 371
           +    Q   +R ER  R     NV   +EP
Sbjct: 404 VHHAEQGALKRIERFVRTPLPVNVVEGFEP 433


>gi|300972035|ref|ZP_07171795.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300309257|gb|EFJ63777.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|324011376|gb|EGB80595.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
          Length = 432

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/359 (36%), Positives = 196/359 (54%), Gaps = 12/359 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        A  + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------AFVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 292

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I
Sbjct: 293 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTLPANSSI 350


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 186/335 (55%), Gaps = 8/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P   ++DV+  AQ+G+GKT  F +++   +    D   P     AL
Sbjct: 61  GFEKPSAIQQRAIVPCCMKRDVIAQAQSGTGKTATFSVSVLQNI----DESIPEVQ--AL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV    CIGG +V  ++R L++G HIVVGTPGR+ D 
Sbjct: 115 VMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLESGVHIVVGTPGRVNDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L  S +K  VLDEADEML  GF+D I  +    P   ++++ SAT+   +  +  
Sbjct: 175 IQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVVLLSATMPAEVLEVTN 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  E      I    + V   + +   + ++ +      A++FC+TR  V
Sbjct: 235 RFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVNVTQAVIFCNTRRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 + +  + V  + G++ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 295 DYLANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 354

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + +L SN EN +HR GR+GR GRKG+++ FV  Q+
Sbjct: 355 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQD 389


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 197/344 (57%), Gaps = 7/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY   TSVQE  +   L   D++VS+ TGSGKT AF L     L+  + + +P 
Sbjct: 14  QAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSLHRLI--DRKPAPG 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + P  L + PTRELA QV + ++  YA+    +  A  +GG     + + L     +VV 
Sbjct: 72  AGPRVLVLTPTRELAQQVEKAVKT-YARNLRYLNTACLVGGAPFFAQAKLLSRPVDVVVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  + L +S ++ +VLDEAD MLD+GF +DIE I+ ++P  R+ L+FSAT+ 
Sbjct: 131 TPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPASRQTLLFSATLD 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249
             +  LA+   ++  R+ IA+     ++I+ R ++   +  ++  + ++L     + A+V
Sbjct: 191 GVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMADNIVHKNRLLESLLGGDDLQQAVV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+      +  L E  F   AL G++ Q  R+  L  +R GR  V +ATDVAARGID
Sbjct: 251 FTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGVLVATDVAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  +  VI+ +     E+ +HR GRTGRAGR G+++ F  P+ M
Sbjct: 311 VAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREM 354


>gi|115373430|ref|ZP_01460728.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310822521|ref|YP_003954879.1| ATP-independent RNA helicase dbpa [Stigmatella aurantiaca DW4/3-1]
 gi|115369596|gb|EAU68533.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309395593|gb|ADO73052.1| ATP-independent RNA helicase DbpA [Stigmatella aurantiaca DW4/3-1]
          Length = 459

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 177/319 (55%), Gaps = 8/319 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E G+   T +Q   +   L+ +D++  AQTGSGKT AF L L   +     R    
Sbjct: 14  QVLAELGFTTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLEKVQPARRRLQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               AL + PTREL  QV  E+  L  +  G+ V V  GG  +  +   L  GAHI VGT
Sbjct: 72  ----ALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLSGGQPIRPQLDALGKGAHIAVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +  + L+   L  VVLDEAD MLD+GFR+D+E IL + P  R+ ++FSAT  P
Sbjct: 128 PGRVLDLLDREALDTGQLATVVLDEADRMLDMGFREDMERILGAVPPSRQTVLFSATFPP 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +++ +QK+  RV +A E     DI          ++   ++ ILR++   +AIVFC
Sbjct: 188 TIEAMSRAFQKEPARVTVA-EAGVAPDIQQLCFTCGPHEKTQLLLRILRHYQPASAIVFC 246

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A+V+  T++L +       L G+L Q +R   +   R+   RV +ATDVA RGID+ 
Sbjct: 247 NLKATVTELTQMLVDAGVSADGLQGDLEQSDRDRVMAKFRNHSTRVLVATDVAGRGIDVE 306

Query: 312 DLELVIHAELSSNPENLLH 330
            L+ VI+ ++ S PE  +H
Sbjct: 307 ALDAVINFDVPSQPEPYVH 325


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 196/341 (57%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A++E+GY+  T +QE  +   L+ +D+L  AQTG+GKT AF +     L   
Sbjct: 7   NITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQLLNRH 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             R+       +L + PTRELA+Q+   +   YAK TG+  AV  GGV    + R L+ G
Sbjct: 67  EKRYI-----RSLIVTPTRELAIQIQENI-CAYAKHTGIRSAVIFGGVPQKPQERILKAG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I+   ++I  ++  +LDEAD MLD+GF  D++ ++   PKK++ L 
Sbjct: 121 VDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPKKKQTLF 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA++  K+ + + +         ID     V  +++   ++ +L  +  
Sbjct: 181 FSATMPKEIRALAESLLKNPISIEVTPAATTVEKIDQTLYYVDKANKKRLLLKLLNKNRV 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +NA+VF  T+++ +R  K L E       + G  SQ  R  AL   ++G++RV +ATD+A
Sbjct: 241 QNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVLVATDIA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ +L  V + ++ +  E  +HR GRTGRAGR+G ++
Sbjct: 301 ARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAI 341


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   LL++  +  
Sbjct: 12  ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 71  -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 130 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    +   +  +++ H  +  +VF
Sbjct: 190 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347


>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 505

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 210/400 (52%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 39  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 97

Query: 68  --------------------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 98  AQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 157

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 158 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 211

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 212 LDMGFIEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 269

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  FQ  AL G+
Sbjct: 270 IAQTVHYVDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGD 329

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 330 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 389

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 390 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 429


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 198/341 (58%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           I  AL+E G+   T +Q   L   L++KD+   AQTG+GKT+AF +A    L ST + E 
Sbjct: 20  IKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDHLLSTPVPEG 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S   +R+ L  G  
Sbjct: 80  RQLN---QPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRKVLDKGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P  K R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++     
Sbjct: 197 FSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+ S       L     +V  L+G++ Q++R   L+   +G+  + +ATDVA
Sbjct: 257 EKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSV 357


>gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7]
 gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 479

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 193/336 (57%), Gaps = 8/336 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  
Sbjct: 31  PELL-ENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRF 89

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GAH
Sbjct: 90  RIQ------TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAH 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+FS
Sbjct: 144 IIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     ++
Sbjct: 204 ATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPES 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAAR
Sbjct: 264 AVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+  L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 324 GLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKG 359


>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ EA+ +  Y   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 72  VPELM-EAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 130

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       AL +APTRELA Q+    + L +  GV     +GG+ +  + RDL    H
Sbjct: 131 RPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGR+ DH+   KG ++  L+ +V+DEAD +LD+ F   ++ IL   P KR   +F
Sbjct: 185 ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 244

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + V+V ++++ +   ++    +LV+   ++  ++++L     K
Sbjct: 245 SATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGK 304

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + IVF  T A   R T +LA  L F  V L G+L+Q +R  +L   + G+A + IATDVA
Sbjct: 305 SIIVFTRTCAHTQRST-LLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ ++ Q
Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQ 409


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 198/353 (56%), Gaps = 9/353 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  I   I +++   GY   T VQ+ ++   L  K+++V +QTGSGKT +FG+ +   
Sbjct: 5   FKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIPICHQ 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +      P  L +APTRELA+Q+  +L  L     + V    G  S  ++ + L
Sbjct: 65  VEWKKRK------PQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQAQRL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HI+V TPGRL DH+  + +++SH++ +V+DEADEM ++GF D I  I++  PKK +
Sbjct: 119 KEMTHILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIPKKSQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   +  L   Y K+   ++I +E+R    ID R  +V   D+   + ++L  
Sbjct: 179 KLLFSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLESVLIT 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               ++I+FC+T+  V   T  + +   +V  L G + Q+ R+  L   + G  R  +AT
Sbjct: 239 ENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRYLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           DVAARG+D+ D+ LV++ ++  N E+  HR GRT R  + G +V F  P  M+
Sbjct: 299 DVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASPYEMK 351


>gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ EA+ +  Y   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 72  VPELM-EAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQ 130

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       AL +APTRELA Q+    + L +  GV     +GG+ +  + RDL    H
Sbjct: 131 RPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKPH 184

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGR+ DH+   KG ++  L+ +V+DEAD +LD+ F   ++ IL   P KR   +F
Sbjct: 185 ILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 244

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + V+V ++++ +   ++    +LV+   ++  ++++L     K
Sbjct: 245 SATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMGK 304

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + IVF  T A   R T +LA  L F  V L G+L+Q +R  +L   + G+A + IATDVA
Sbjct: 305 SIIVFTRTCAHTQRST-LLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ ++ Q
Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQ 409


>gi|149378257|ref|ZP_01895969.1| RNA helicase DbpA [Marinobacter algicola DG893]
 gi|149357454|gb|EDM45964.1| RNA helicase DbpA [Marinobacter algicola DG893]
          Length = 381

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 133/342 (38%), Positives = 182/342 (53%), Gaps = 10/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G+ N T +Q   L   L  KD++  AQTGSGKT AFG+ L   L     RFS    
Sbjct: 17  LSRLGFENPTPIQSGALPHALAGKDLIAMAQTGSGKTAAFGIGLVERL--NPRRFSVQ-- 72

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV + L E   A+  V +    GGV++  +   L +GAHIVVGTPG
Sbjct: 73  --GLVLCPTRELADQVAKSLRELARARDNVKILSLCGGVAIGPQIGSLSHGAHIVVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   L +  L  ++LDEAD MLD+GF+D +E I+  +P KR+ LMFSAT    I
Sbjct: 131 RIQDHLRKGTLKLDQLITLILDEADRMLDMGFQDAVEDIISQAPAKRQTLMFSATWPDNI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ YQ     V I S+  + SDI  R   +A   +  A+  +L  H   + I FC+T
Sbjct: 191 RKLSEQYQHAPADVRIESQAVE-SDITERFYEIAPGQQVQAVAALLSLHQPASCIAFCTT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L    F  + L G+L Q++R + L    +    V +ATDVAARG+D+  L
Sbjct: 250 KQQCDDVANELNGLGFAALPLHGDLEQRDRDSVLVRFGNQSCSVLVATDVAARGLDIKSL 309

Query: 314 ELVIHAELSSNPENLLHR-SGRTGRAGRKGMSVFVIPQNMQR 354
            LV++ E + +PE   HR   R GR  R G   F  P    +
Sbjct: 310 PLVVNVEPARDPEVHTHRIVDRPGRGARAG-GHFCTPSQAHK 350


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E L     V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T+  + 
Sbjct: 14  IEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQTV--QQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L+ GA 
Sbjct: 72  KKLN--GTPQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKLEEGAD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P ++++L+FS
Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQILLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A    +  V V ++  N     +      V    +   +  ++     + 
Sbjct: 190 ATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGSRNWQQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V +    M R  E L +
Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLQ 360


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 199/340 (58%), Gaps = 5/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + I +A+ E+GYV+ T +QE  +   L+ +D+L  AQTG+GKT AF +     LL +
Sbjct: 7   HITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQ-LLKK 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + + S  S    L + PTRELA+Q+   +      T +  AV  GGV    + R L+ G 
Sbjct: 66  HYKQSIRS----LIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQERILKAGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I+   ++ISH++  +LDEAD MLD+GF  D++ I+   PK+++ L F
Sbjct: 122 DILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPKRKQTLFF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA++   + V + +   +     ID     V  +++   ++ +L+ +  +
Sbjct: 182 SATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKLLQKNRVQ 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NA+VF  T+++ +R  K L E+      + G  SQ  R  AL   ++G++RV +ATD+AA
Sbjct: 242 NALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVLVATDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  V + ++ +  E  +HR GRTGRAGR+G ++
Sbjct: 302 RGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAI 341


>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 209/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE +   + I +A+ E GY   T VQ  ++   L  KDV+ +AQTG+GKT A+ L L  
Sbjct: 2   VFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  + + +    AL + PTRELA QVG  ++       +  A   GGV    + + 
Sbjct: 62  ILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAKK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++ TPGRL +H++   +++S ++ VV DEAD +LD+GF D+++ +L   PKKR
Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FS  +S ++  L++   K  V V I ++      ++    LV    +   +  ++ 
Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+ S     + L     + + L G+ +  +R+ A+   ++   RV +A
Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ DL  VI+ EL  + E+  HR+GRTGRAG++G ++ ++ Q  + + + + 
Sbjct: 302 TDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIE 361

Query: 361 REANVSVVWEPAPSVEAIR--ERDAQR 385
           +    ++  E  P  E     E++A++
Sbjct: 362 KILKYTIKTEFYPGFETKEWVEKEAKK 388


>gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133K13]
          Length = 430

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 192/339 (56%), Gaps = 10/339 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L + G+     +QE  +   L   DV+  A TG+GKT AF L +   L+ +N    
Sbjct: 13  ILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPMIQ-LVVKNQGIQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  + +APTRELA+Q+  E++     TG+  A   GG S+  +   L+    I+V 
Sbjct: 72  ------GIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQLDALRKKPEIIVA 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   + ++++K VVLDEAD MLD+GF +DIEFILD +P++R   ++SAT+ 
Sbjct: 126 TPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPEERTTSLWSATMP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIV 249
           P I  LA+   K   R+ + S+    + ID   +++   ++   +++ +  HG     IV
Sbjct: 186 PEIIRLAETNMKSPKRILVDSDELSCAGIDQSFLIIKDREKSKYLLDFI--HGNIGQCIV 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FCST+       K+L +    VV++ G++SQ  R +++   R   A + +ATDVAARGID
Sbjct: 244 FCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANILVATDVAARGID 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P + LVI+ ++ +      HR GRT RAG KG ++ ++
Sbjct: 304 IPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMV 342


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 201/355 (56%), Gaps = 4/355 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +FE   +P  + + L+  G    T +Q   +   L  +DV+  AQTG+GKT AFGL L
Sbjct: 31  LNLFEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPL 90

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L+ E  + +P  A  +L +APTRELA Q+   L  L   T + VA+ +GG S+  + 
Sbjct: 91  LAKLMEEPGKPAP-KAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQI 149

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +Q G  ++V TPGRL D +  + L++S  + +VLDEAD+MLDLGF   +  I    P 
Sbjct: 150 KRMQMGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPS 209

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+   +  +A +Y     RV ++   +    +      +A + + + +V +
Sbjct: 210 TRQTMLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVEL 269

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  + L +  + V A+ G  SQ +R  AL+  RDG  RV 
Sbjct: 270 LDKHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVL 329

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAGR G +V F  P  M
Sbjct: 330 VATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEM 384


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 187/336 (55%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+SE+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LLA+  + + +
Sbjct: 14  KAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLAKGHK-AKS 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QVG  +E       +  AV  GGV ++ +   L++G  ++V TP
Sbjct: 72  GQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++   +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S  
Sbjct: 132 GRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFSDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK      V +++   N   + +      V  + +   ++ +++    +  +VF  
Sbjct: 192 IRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQQVLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 252 TKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 312 LPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLV 347


>gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 460

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 192/339 (56%), Gaps = 5/339 (1%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +QE  +   L+  D+L  AQTGSGKT+AF L + S +LA  D+  P +A  AL +APTRE
Sbjct: 33  IQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQILALGDKRFPKTA-RALILAPTRE 91

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LAVQ+   +  +   T +   +  GGVS  ++ + ++ G  I++ TPGRL D IR K ++
Sbjct: 92  LAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRMEAGVDILIATPGRLRDLIREKYVD 151

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +S  + ++LDEAD MLD+GF  DI  I+    + R+  +FSAT+   ITTLAK    D V
Sbjct: 152 LSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQTALFSATMPKEITTLAKCLLNDPV 211

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
           ++ ++ +    ++I  +   V   ++ N +  +L      + IVF  T+      T+ LA
Sbjct: 212 KIEVSPQGTTAAEIAQKLYCVPTCEKKNVLGKLLTNPDFVSVIVFTRTKYCADAVTRNLA 271

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              + V  + G  SQ  R +AL+  R+   R+ +ATD+AARGID+P +  VI+ +L    
Sbjct: 272 SRGYSVATIHGNKSQSARQSALKAFRERSVRILVATDIAARGIDIPGISHVINYDLPDEA 331

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLF 360
           E+ +HR GRTGR G  G ++ +  + ++    R  ERL 
Sbjct: 332 ESYVHRIGRTGRNGASGEALTLFDEGVEQMRLRAVERLI 370


>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
 gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
          Length = 470

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 198/383 (51%), Gaps = 27/383 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           I +AL+  G      +QE  L+  L   D++  A+TG+GKT+AF + +    +A +D   
Sbjct: 4   IADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDPEY 63

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL IAPTRELA+QV  ++       G       GGV    +   L++G  
Sbjct: 64  GELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESGVD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D    + L++SH+K++VLDEADEMLDLGF  D+E IL  +P+ R+ ++FS
Sbjct: 124 IVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTMLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           AT+  AI  LA+ + +  + +   +SE+ Q      + V  A   D+   +  IL+    
Sbjct: 184 ATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRILQADDV 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +  R    L +  F    L G+++Q  R  ALQ  RDG+    +ATDVA
Sbjct: 244 ARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV------------------- 345
           ARGID+ ++  VI+     + +  +HR GRTGRAG  G++V                   
Sbjct: 304 ARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADLHRWKMINTALG 363

Query: 346 --FVIPQNMQRRAERLFREANVS 366
             F  PQ     ++ LF +  +S
Sbjct: 364 LPFAEPQETYSSSDHLFHDLGIS 386


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis
           familiaris]
 gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis
           familiaris]
 gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis
           familiaris]
          Length = 673

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 75  FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 134

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 135 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 192

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 193 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 252

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 253 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 312

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 313 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 370

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 371 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 430

Query: 350 Q 350
           +
Sbjct: 431 R 431


>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
 gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
          Length = 455

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   T +Q A +   +  +D++ +AQTG+GKT  F L L   L     +  
Sbjct: 12  ILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLLERL----SKGK 67

Query: 71  PA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHI 127
           PA  +   AL + PTRELA QV   +E LY K   + + V  GGV V+ +   L+ G  I
Sbjct: 68  PAGNNQVRALVLTPTRELAAQVAESVE-LYGKNLKLTSFVVYGGVKVNPQMMRLRRGVDI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D    + +    L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSA
Sbjct: 127 LVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQNLMFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LAK    D V V++A  N   + ++ R   V  + +   + +++  +  K  
Sbjct: 187 TFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRLHPVDKAKKPALLSHLILQNDWKQV 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  K L        A+ G  SQ  R  AL   +DG+ RV +ATD+ ARG
Sbjct: 247 LVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVLVATDIVARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L  V++ +L +  E+ +HR GRTGRAG  G ++  +     +    + R  N ++
Sbjct: 307 LDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELADIERLINATI 366

Query: 368 VWEPAPSVEA---IRERD 382
             E  P  E    ++E D
Sbjct: 367 AREVVPGFEPSNQVKETD 384


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 188/342 (54%), Gaps = 5/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D   
Sbjct: 20  ICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLDRVFDDADIAP 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  +L+   A   V +A   GG     + + LQ G  +V+G
Sbjct: 80  LDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKLLQRGVDVVIG 139

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
           TPGRL D H RG  L + H+  VVLDEADEMLDLGF   IE IL++      + ++FSAT
Sbjct: 140 TPGRLLDLHERGD-LVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNAHQTMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246
           +  AI  L++ +    V +   SE  + +    R V       D+   I +IL+  G   
Sbjct: 199 MPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAHILQAQGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F  T+ S ++    LAE  F V A+ G+L Q+ R  +LQ  R G   + +ATD+AAR
Sbjct: 259 SIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLV 360


>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 474

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/381 (37%), Positives = 205/381 (53%), Gaps = 19/381 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +A+S RGY  LT VQ  +L   +  KD++  AQTG+GKT AF L L + L+
Sbjct: 35  FDLHPKIL-DAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNRLI 93

Query: 64  AENDRFSPA-------SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGV 112
            E + F+         S    L + PTRELA+QV   +    ++L  KT  V     GG 
Sbjct: 94  QEYNLFTEGDLEPEHQSKVKVLVLTPTRELAIQVADNISAYAQFLPFKTTAVY----GGS 149

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +++ +R+ LQ G  I+V TPGRL DHI   GL++S++  +V+DEAD MLDLGF  DIE +
Sbjct: 150 NMNPQRKALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKV 209

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + L FSAT S A+ TLA+        +N+A+ +   S I     LV    + 
Sbjct: 210 KKLVAATHQTLFFSATYSEAVKTLAEKMLLAPEWINVAT-SATASLITQEVYLVDTRRKA 268

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  ++  +  +  +VF STR S       L     +     GE +Q  R+ AL   + 
Sbjct: 269 ELLSELIGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALDEFKS 328

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G+ RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV PQ+
Sbjct: 329 GKLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQD 388

Query: 352 MQRRAE-RLFREANVSVVWEP 371
            +   E  L  E  +  +  P
Sbjct: 389 REMLQEIELLIEQTLPCITMP 409


>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
 gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 195/354 (55%), Gaps = 10/354 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA  + G+   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R  
Sbjct: 25  LCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQALLDNPQRL- 83

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    HI++ 
Sbjct: 84  -----FALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKPHIIIA 138

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  LK +V+DEAD +L++ F  +++ +L   PK+RR  +FSAT+
Sbjct: 139 TPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTFLFSATM 198

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   +  V+V +A++ +    +    + +    +D  +V +L      + +V
Sbjct: 199 TKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYVLNELAGNSFMV 258

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T  +V R T +L       V L G++SQ +R  AL   +     + +ATDVA+RG+D
Sbjct: 259 FCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVATDVASRGLD 318

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           +P +++VI+ ++ ++ ++ +HR GRT RAGR G SV  + Q    + +R E L 
Sbjct: 319 IPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIEHLI 372


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 201/376 (53%), Gaps = 12/376 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + +    +  +T VQE  +   L  KD++  AQTG+GKT A+ L L S L+AE
Sbjct: 7   NLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLLSRLVAE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQ 122
            +   P +   A+ + PTRELA Q+  + E       +   V  GG       ++++ L 
Sbjct: 67  GN---PDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKKGLL 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +V+ TPGRL  HI   G+++S +   +LDEAD MLD+GF DDI  I+   P KR+ 
Sbjct: 124 MGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTKRQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241
           ++FSAT+ P I  LAK   KD   +NIA      + I  ++  +    +  AI+  +   
Sbjct: 184 ILFSATLPPKIRQLAKQILKDPAEINIAISKPNEAII--QSAYICYETQKMAIIQELFSK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F S++  V      L      V A+  +L Q++R   +   ++G+  + +AT
Sbjct: 242 PNRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDILVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           D+ ARGID+ D+ LVI+ ++  +PE+ +HR GRT RA   G+++  + +  Q +  ++  
Sbjct: 302 DIVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKFHKIEE 361

Query: 360 FREANVSVVWEPAPSV 375
           F E ++  +  P P+V
Sbjct: 362 FIEKDIYKIPLP-PTV 376


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 186/336 (55%), Gaps = 9/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +           +L
Sbjct: 2   GFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQSL 54

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTPGR+ DH
Sbjct: 55  ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 114

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLA 197
           +  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  AI  L 
Sbjct: 115 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + K    +   +       I+    +V   ++ +   N L  H  + AIVF  T+  V
Sbjct: 175 QQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+  +  V 
Sbjct: 235 DELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 295 NFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 330


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMIEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +      G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  Y K    + I +       I++  + V   ++ + + +I       + I+FC T
Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   + G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370
             VI+ ++    E+ +HR+GRTGRAG  G ++ FV P       ER   E    + +E  
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366

Query: 371 --PAPSVEAI 378
              APS E +
Sbjct: 367 KIEAPSKEEL 376


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 2/339 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G  + T +Q   +   +  +DV+  AQTGSGKT AFGL +   L+    + +P ++
Sbjct: 16  LKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMIHALMKAGVKPNPKTS 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APTRELA Q+   L      + + VA+ +GG  +  + + L  G  ++V TPGR
Sbjct: 76  -RGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKRLAGGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + + +     +VLDEAD+MLD+GF   +  I     K R+ +MFSAT+   + 
Sbjct: 135 LIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDRQTMMFSATMPKLMG 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  Y  DAVRV +    +    I+     VA + + + ++ +L  H  + AIVF  T+
Sbjct: 195 ELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELLDKHRDELAIVFGRTK 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  KVL +  F   ++ G  SQ +R  AL+  + G+ RV +ATDVAARG+D+PD+ 
Sbjct: 255 HGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRVLVATDVAARGLDIPDVR 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            V + +L +  EN +HR GRT RAG  G +V  V P  M
Sbjct: 315 FVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEM 353


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   LL++  +  
Sbjct: 23  ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 82  -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 141 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    +   +  +++ H  +  +VF
Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQVLVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AARG+D+
Sbjct: 261 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 203/372 (54%), Gaps = 13/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   + +Q A +   +   D+L  AQTG+GKT AF L L S L A N      
Sbjct: 32  KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 89

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L +APTRELA+QV    + + +      V    GG S   + R L+ GA +VVGT
Sbjct: 90  ----ILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGGASYETQTRALRRGAQVVVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++  P  R++ +FSAT+  
Sbjct: 146 PGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPAGRQVALFSATMPE 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ + K    + IAS+    + I  R   V    + +A+  +L     +  +VF 
Sbjct: 206 QIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHKLDAMTRLLEVEPYEALLVFV 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +       LA       AL G++ Q+ R   +  +R G+  + IATDV ARG+D+ 
Sbjct: 266 RTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDVE 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +  V++ ++  + E+ +HR GRTGRAGRKG ++ FV P+  +RR  R    A    + E
Sbjct: 326 RITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI-E 382

Query: 371 P--APSVEAIRE 380
           P   PS E I +
Sbjct: 383 PMKMPSTEDINQ 394


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 199/377 (52%), Gaps = 19/377 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L + + L     R  
Sbjct: 22  VQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMITMLARGRAR-- 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +++ 
Sbjct: 80  -ARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQEQAIDKGVDVLIA 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I    P  R+ L FSAT++
Sbjct: 139 TPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPFTRQTLFFSATMA 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRY------ 241
           P I  +   +  +  ++ +  ++   + I+ R +      RD       ++LR       
Sbjct: 199 PEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMKRDMLRAAITAEG 258

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +NAI+FC+ +  V    K L +H      + G+L Q  R   L   RDG   + +A+
Sbjct: 259 DAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAGFRDGSITLLVAS 318

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P++  VI+ ++ S+ E+ +HR GRTGRAG+ G+++   +P + +      +
Sbjct: 319 DVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCVPSDEK------Y 372

Query: 361 REANVSVVWEPAPSVEA 377
             A   ++ +P P  EA
Sbjct: 373 LGAIEGLIKQPIPRAEA 389


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E GY   T +Q   +   L +KDVL +AQTG+GKT  F L L   L   N +  
Sbjct: 12  ILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQRLKDSNLK-D 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QV + +E          AV  GGV ++ ++  L+ G  I++ 
Sbjct: 71  KKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLKKGVDIIIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I    L++S ++ +VLDEAD MLD+GF +DI+ IL   PK+R+ L+FSAT S
Sbjct: 131 TPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQNLLFSATFS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    K  V V ++  N     ++     V    +   +++++  +  +  +VF
Sbjct: 191 NEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNKNSWQQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ ++ L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AARGID+
Sbjct: 251 TRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ EL +  E+ +HR GRTGRAG  G+++ ++
Sbjct: 311 EQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLV 348


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/340 (37%), Positives = 184/340 (54%), Gaps = 10/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L  EN R + A 
Sbjct: 15  AVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTLL--ENGR-ARAR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +       + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLMRGTDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P I
Sbjct: 132 RLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248
             LA  +  +  RV +A      + I  R  LVA     +A    LR         KN I
Sbjct: 192 ERLADMFLHNPQRVEVARPASTATTITQR--LVATGAEGHAKRERLRGLIRGEEDLKNGI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   K L  H F   AL G++ Q+ R+ AL   R+G   + +A+DVAARG+
Sbjct: 250 IFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P +  V + ++  +PE+ +HR GRTGRAGR G +  ++
Sbjct: 310 DIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLV 349


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/414 (33%), Positives = 216/414 (52%), Gaps = 12/414 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL +   +  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPILQIIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++  +K VVLDEADEMLD+GF  DIE IL  +  + + L+FSAT+  
Sbjct: 128 PGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKNRNQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  +   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLAVVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSVV 368
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +   R  E+L ++    + 
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRTIEQLTKKKMSPL- 366

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             P    +A+R +  Q   Q    ++S  G   +    LL  +    + A FL+
Sbjct: 367 -RPPTDDQALRGQLKQAKAQIEDLINSDLGKYTQDASELLDNYSAVDLVAAFLK 419


>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 644

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 206/351 (58%), Gaps = 12/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+++ G+   + +QE  + P L   ++D++  AQTG+GKT AFG  L   +  EN + +
Sbjct: 14  QAIADMGFETPSKIQEEAI-PQLLAEDRDMVALAQTGTGKTAAFGFPLLQNI-DENSKTT 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                  L IAPTREL +Q+  E++ LY+K   GV V    GG ++  + R++  GA IV
Sbjct: 72  QG-----LIIAPTRELCLQITNEMK-LYSKHMKGVRVVAVYGGANIQEQAREISRGAQIV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ D +R + ++I+ L   VLDEADEML++GF +DI  IL  +P+ +   +FSAT
Sbjct: 126 VATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTWLFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   ++ +AK +  + + + +  +N    ++ +   +V   DR  A+  +   +    ++
Sbjct: 186 MPREVSRIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTRDRYQALKRLSDANPDIFSV 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ +ATDVAARGI
Sbjct: 246 IFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQMLVATDVAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+ D+  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ ++L
Sbjct: 306 DVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQL 356


>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 734

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 199/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 149 LKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRS 208

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  V  A   GG S   +   ++NG  I+VGTPGR
Sbjct: 209 PKVLVLAPTRELANQVAKDFKDITRKLNV--ACFYGGTSYQSQINQIRNGIDILVGTPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 267 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDSEDNPQTLLFSATC 326

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 327 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 386

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 387 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 444

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V F  P+
Sbjct: 445 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492


>gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 383

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + ++L   + + +   +GGV   ++++ L 
Sbjct: 69  PVKEQRFR--GEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 442

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 184/341 (53%), Gaps = 3/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+ RG V   ++QE  L   L  +D++  A+TG GKT+ FG+ +   +  + D   
Sbjct: 23  IVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKTLGFGVPVLDRVFDDADIEE 82

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELAVQVG +L        + +A   GG     + + L+ G  ++VG
Sbjct: 83  LDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATIYGGRPYEEQIKLLEKGVDVIVG 142

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI 189
           TPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE IL+     K + ++FSAT+
Sbjct: 143 TPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPDIEKILELLHGNKHQTMLFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              I TLA+ +    + +   S  EN+ H             D+   I   L+  G    
Sbjct: 203 PGPILTLARTFMNRPIHIRAESGDENQTHESTRKVTFQAHRMDKLAIISRALQAKGRGKT 262

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ S +     LA   F+V A+ G+L Q  R  +L   R+G+  + +ATDVAARG
Sbjct: 263 IIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAREKSLNAFREGKVEILVATDVAARG 322

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++
Sbjct: 323 IDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLV 363


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+     +Q A++   L  +DV+  + TGSGKTVAF +          +
Sbjct: 13  PEIL-RAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPAL-------E 64

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
           R  P   A   L + PTRELAVQV  E+  L   K G++     GG S  R+ R L  G+
Sbjct: 65  RVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+    L +  LK VVLDEAD MLD+GFR+DIE IL + P  R++L F
Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K   +D   + I +  +    ++     V    +  A+  ++  H  +
Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFCST+  V    + L    + V  L G+LSQ +R   +   R       IATDVAA
Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLE+V + +L ++ E+  HR GRTGRAG+ G +   +      + + + R A +
Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364

Query: 366 SVVWEPAPSVEAIRE 380
            +     PS++ + E
Sbjct: 365 DLRRGRLPSLDEVEE 379


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 202/356 (56%), Gaps = 11/356 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL ++G    T +Q+A +    + KD++  ++TG+GKT+A+ L L   +  +     
Sbjct: 13  LAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQRVDVKK---- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA Q+   L          VA  IGG ++  + + L+   HI++G
Sbjct: 69  --GGTQVLIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKLKREPHIIIG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHIR + L++S +K VVLDEAD+ML  GFR+DI+ ++D +PKKR++L+FSAT+ 
Sbjct: 127 TPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQVLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P    LA  Y K AV  ++A E    S ++ R      + + + +V  L+      A+VF
Sbjct: 187 PEAKKLAHKYMKSAVVADVA-EKAVASTVEQRVYETVKTHKFSLLVRHLKEINPYMAVVF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           C+TR         L E    VV  + G +SQ +R+  ++     R +V +A+D+AARG+D
Sbjct: 246 CNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362
           +  +  V + ++  N E  +HR GRTGRAG +G+S+ +  P++  + R+ E+  +E
Sbjct: 306 VEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRKLEKAIKE 361


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPKSSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 453

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 187/340 (55%), Gaps = 1/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+SE GYV+ T +Q   +   L   D+L +AQTG+GKT  F L +   LL E   
Sbjct: 19  QPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHRLL-EKQA 77

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  L +APTRELA QV   +E       +   V  GGV ++ + R L  G  I+
Sbjct: 78  PRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALAAGVDIL 137

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH     +++S ++  VLDEAD MLD+GF  DI  IL   PK+R+ ++FSAT
Sbjct: 138 VATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQNMLFSAT 197

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I TLA     +   V +A  N     +D    LVA   + + + +++R H  +  +
Sbjct: 198 FSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHKRDLLTHLIRRHDWRQVL 257

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + LAE      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+
Sbjct: 258 VFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLVATDIAARGL 317

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ EL + PE+ +HR GRTGRAGR G +V ++
Sbjct: 318 DIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLV 357


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 138/393 (35%), Positives = 215/393 (54%), Gaps = 20/393 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EA+ E GY   + +Q   +   L  +DV+  A TG+GKT AF L + S +  +  
Sbjct: 18  PSVL-EAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVLSRIDPKLR 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P AL +APTRELA+QV        +K   V  VCI GG +   + + L  GA 
Sbjct: 77  R------PQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQALGRGAQ 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L +  L+ +VLDEADEML +GF++D+E +L ++ +++++ +FS
Sbjct: 131 VVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEEKQVALFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  ++K Y  + V V + +      +I+ R  LVA   + + +  IL       
Sbjct: 191 ATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRILEVEPFSA 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+ +     + L    F    L+G++ Q  R   +  +R+G+  + +ATDVAAR
Sbjct: 251 MIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILVATDVAAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFREA 363
           G+D+  +  V + +   + E+ +HR GRTGRAGR G+S +FV P  ++M    ER  R+ 
Sbjct: 311 GLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAIERATRQ- 369

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
              +   P P+V  +   +A RI +   F DSI
Sbjct: 370 --PLAETPFPTVADV---NAGRIAK---FRDSI 394


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 192/338 (56%), Gaps = 10/338 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+E G    T VQ   +   L  KD++  AQTG+GKT+AF L +   +  +       
Sbjct: 16  KTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLPILEKVKVDKPFIQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+  EL  L +  G       GG  V R+ + L+   HIVVGTP
Sbjct: 74  ----ALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKGAIHIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+R   ++ S ++ +VLDEAD+ML +GF  +++ I+  +  KR+ ++FSAT+  +
Sbjct: 130 GRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTMLFSATMPGS 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVF 250
           I  LAK Y K  V + I S+     +I    ++V+ +DR   + +  ++  +    A++F
Sbjct: 190 IRNLAKRYMKTPVDIKIESKKVTLDEIS--QLVVSTTDRAKQDTLFKLIDQYRPFLALIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   ++  + L EH +    L G+LSQ +R   ++  R    ++ +ATDVAARG+D+
Sbjct: 248 CRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVATDVAARGLDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  V + ++  + E+ +HR GRTGRAG KG+++ ++
Sbjct: 308 EGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLV 345


>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 21  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 79

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 80  AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 139

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 140 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 193

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 194 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 253

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 254 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 313

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 314 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 373

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 374 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 411


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVAWFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 494

Query: 350 Q 350
           +
Sbjct: 495 R 495


>gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 441

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 188/339 (55%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY  LT +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ GA I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGAEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ +I
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLI 347


>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
 gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
          Length = 475

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 127/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +   L     +     
Sbjct: 16  AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLSQSATKTKGRQ 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 76  PVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PKKR+ L+FSAT S  I
Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T LA +   + V +++A +N     +D    LV    +   + +++        ++F  T
Sbjct: 196 TGLANSLLNNPVSISVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255

Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           +   ++    LAEHL     +  A+ G  SQ  R+ AL   +DG+ +  +ATD+AARG+D
Sbjct: 256 KHGANK----LAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358
           +  L  V++ EL    E+ +HR GRTGRA   G ++ +           I + ++R   R
Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371

Query: 359 LFREANVSVVWEPAPSVEA 377
           L  E      ++P PS++A
Sbjct: 372 LALEG-----YDPDPSIKA 385


>gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 389

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 15  NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 74

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + ++L   + + +   +GGV   ++++ L 
Sbjct: 75  PIQEQRFR--GEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLD 132

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 133 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 192

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 193 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 252

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 253 REEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+
Sbjct: 313 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSI 358


>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
 gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
          Length = 642

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 195/345 (56%), Gaps = 9/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           + + +AL   G+ + T VQE  +   L  KD+LVS+QTGSGKT AF L   + L  +   
Sbjct: 12  ETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTLNALTGQETF 71

Query: 66  ---NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ + L
Sbjct: 72  VPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQIQQL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I + +  + +
Sbjct: 132 K-GAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIGELAANRNQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
            LMFSAT +  I  LA+    D  R+ I + +  ++D+            +   + + L 
Sbjct: 191 TLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKKKLLTHWLS 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++ +A
Sbjct: 251 DESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKILVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++
Sbjct: 311 TDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAI 355


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +        
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPIL------- 64

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P S+ + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 65  EKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 125 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 185 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 245 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 305 ARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 629

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                F+    P A+   PTRELA+QV   L  +    G+VV    GGV+   + R L++
Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++    
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
                  + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400
              +   ER+ R A +     PAP+ E I +  A+   +D          LF+D  Q  E
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502

Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423
                 LL   DP +I A  L +
Sbjct: 503 ------LLKDADPVEILASALAV 519


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD + + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG++G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRGLALSLVASRETG 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 186/339 (54%), Gaps = 5/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+ + T +Q   + P L  +DV+ SA TGSGKT AF L +   L+ +     P 
Sbjct: 14  KAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPILHCLMEK-----PR 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA Q+   L  L A T +  A   GGVS+  + +  + G  +++ TP
Sbjct: 69  GTTRALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFRRGVDVLIATP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH +     ++ ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT+   
Sbjct: 129 GRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQTLLFSATLPAP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA++  ++ V +NI  +    + I + A  V    +    + +++   +K+ + F  
Sbjct: 189 IMELARDMLQNPVSLNIERKAAPAAGITHVAYPVPHELKSTLFLELVKNSASKHVLAFTR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    L +H      + G  SQ +R+ AL   + GR RV +ATD+AARGID+  
Sbjct: 249 TKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLVATDIAARGIDVEA 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L LV++ ++   PE+ +HR GRTGR    G +  ++  N
Sbjct: 309 LGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPN 347


>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 524

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/398 (35%), Positives = 208/398 (52%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L        L  
Sbjct: 47  PEIV-SALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 105

Query: 61  TLLAE-------------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
           T   +               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 106 TQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 165

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 166 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 219

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    ++I 
Sbjct: 220 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIA 279

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L 
Sbjct: 280 QTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 339

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 340 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 399

Query: 340 RKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           R G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 400 RSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 437


>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 453

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 186/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+SE+GY + + +Q   +   L  KDV+ +AQTG+GKT AF L +   L ++ DR  
Sbjct: 12  ILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILERL-SKGDRAR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QVG  +    +K  +   V  GGV ++ +   L+ G  ++V 
Sbjct: 71  SNQA-RALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRLRRGVDVIVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ LMFSAT S
Sbjct: 130 TPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     +      V    +   +  ++R +    A+VF
Sbjct: 190 NDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQALVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R T+ L        A+ G+ SQ  R+ AL   + G  ++ +ATD+AARGID+
Sbjct: 250 SRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L    E+ +HR GRTGRAG +G +V ++
Sbjct: 310 DQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLV 347


>gi|111024195|ref|YP_707167.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823725|gb|ABG99009.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 465

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 192/362 (53%), Gaps = 5/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+  AL   G      +Q A +   L  +DVL  A TGSGKT+AFGL +   L   
Sbjct: 20  GLPAVMTHALDRSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRLKGA 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  + + PTRELA+Q+ R L+      G+ VA  +GG+ + R+   L  G 
Sbjct: 80  ASR---RGFPRGIVLVPTRELALQIERALDEPALSVGLRVANVVGGIPIKRQVEILSRGV 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+    +++  +  + LDEAD M DLGF   +  ILD +P   + L+F
Sbjct: 137 DLLIATPGRLADHVAQGSVSLDDVTVLALDEADHMADLGFMPQVTTILDKTPADGQRLLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + Y +D V  + A      S + +  + V   D+ + + +I    G  
Sbjct: 197 SATLDGEVDTLVRRYLRDPVTHSTAPVTASVSTMRHHLLFVDRVDKKSVVAHIGSRVG-- 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V R  + L E      AL G  +Q  R+  L+   +G   V +ATDVAA
Sbjct: 255 RTLMFVRTKYGVDRLAQQLHEAGISAGALHGGKAQNNRTRTLESFAEGTTPVLVATDVAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  ++P++ LHR+GRT RAG  G+ V ++ ++ +   E+L R+A +
Sbjct: 315 RGIHVDDISLVVHVDPPADPKDYLHRAGRTARAGESGVVVTLVTEDERAEVEKLTRKAGI 374

Query: 366 SV 367
            V
Sbjct: 375 EV 376


>gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 490

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 4/348 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  IP  + + + E G+   T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL++  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT++  +  LA  +     +V++  E      ++     V+  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   +DG   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 189/342 (55%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +  ++  +       
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSIDKKE------ 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
            A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 68  KAIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHVPSILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL      ++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKNCKQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + + KD   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 349


>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 630

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 214/418 (51%), Gaps = 49/418 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58
           P+++  AL+  GY   T VQ+  +   L  +D+LVS+ TGSGKT AF L           
Sbjct: 140 PEIV-SALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIERFAQMQK 198

Query: 59  ASTLLAEND-----------------RFSPASAPLALAIAPTRELAVQV-------GREL 94
           A TL    +                 R  P + P  L + PTRELA+QV       G+ L
Sbjct: 199 AGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAATTYGKHL 258

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L   +       +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VL
Sbjct: 259 RRLRTVS------ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVL 312

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD MLD+GF +DIE I+D +P  R+ L+FSAT+   + +LA+ +  DA R+ I  E  
Sbjct: 313 DEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPE 372

Query: 215 QHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             ++I      V   + +D  + ++L       AIVF +T+         LAE  F   A
Sbjct: 373 SRANIAQSVHYVDDRAHKDRLLTHLLADGALDQAIVFTATKNDADVIAARLAEDGFASAA 432

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G+L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR G
Sbjct: 433 LHGDLPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIG 492

Query: 334 RTGRAGRKGMSVFVIPQ---NMQRRAERLFR---EANVSVVWEP--APSVEAIRERDA 383
           RTGRAGR G++V ++        +R ER  R     NV   +EP  APS  A   R A
Sbjct: 493 RTGRAGRSGIAVSLVHHAEVGTLKRIERFVRTPLPVNVIAGFEPKRAPSTRAPARRGA 550


>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Oryctolagus cuniculus]
          Length = 455

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 200/354 (56%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   +L
Sbjct: 6   FSFAPEIL-RAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        + V   +GGV +  +   L+ 
Sbjct: 65  -DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDN--AIVNILR 240
           +FSAT S A+  LA       V+ NI + ++Q++  +    V+  +  R     +  ++ 
Sbjct: 184 LFSATFSTAVKQLANVMM---VKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +A
Sbjct: 241 KKNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|260910887|ref|ZP_05917530.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634995|gb|EEX53042.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 611

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 175/311 (56%), Gaps = 7/311 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWL 97
           DV+  AQTG+GKT A+G+ +   +  E           AL ++PTREL +Q+  +L ++ 
Sbjct: 17  DVIALAQTGTGKTAAYGIPVLQKVNPEEKHTQ------ALILSPTRELCLQIADDLADFS 70

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G+ V    GG S+  + R L+ GA I+V TPGRL D ++     + ++  VVLDEA
Sbjct: 71  KYVQGLHVVPVYGGASIEMQIRQLRKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEA 130

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DEML++GF + I  I +  P  R  L+FSAT+S  I  +AKNY  D   + + S N    
Sbjct: 131 DEMLNMGFTESINAIFEGVPTDRNTLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAE 190

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +++   +V   D+  A+  ++ ++    AI+FC T+         L    +   AL G+
Sbjct: 191 KVNHIYYMVNAKDKYLALKRLVDFYPRIFAIIFCRTKIETQEIADKLIRDGYNAEALHGD 250

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           LSQQ+R   +Q  R+   +  +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGR
Sbjct: 251 LSQQQRDLTMQKFRNHNVQFLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGR 310

Query: 338 AGRKGMSVFVI 348
           AG+KG S+ +I
Sbjct: 311 AGKKGTSISII 321


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score =  205 bits (522), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 3   LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
           +  S      AL I PTRELA QV  E+  L ++   + VA+ IGG  + R+   LQ   
Sbjct: 63  NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     R+++  E      I    V  + S++   +V  L      
Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEVTTSVKIKQEIVYASESEKYEKLVTQL-CQREG 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 236 SIIIFVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++ FV PQ+ +R      +E  
Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPVLADKEGE 355

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           ++       SV+  ++R+++++ + P  L +  G +K
Sbjct: 356 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 387


>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 452

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/366 (34%), Positives = 189/366 (51%), Gaps = 5/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ I  AL++ G      +Q A L P L  +DVL    TGSGKT+ FGL + + L   
Sbjct: 10  GVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLARL--A 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N    P   P  L + PTRELA QV   L  L A  G+  A  +GG+S+ R+  +L  G 
Sbjct: 68  NGASKP-RKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDELARGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+    + +  +    LDEAD+M D+GF   +  ILD +PKK + L+F
Sbjct: 127 DVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  +    + A      S +++  + V    +   +  I    G  
Sbjct: 187 SATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFVDQEQKKLVVTEIAAREG-- 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R TK L        A+ G  +Q  R+  L+  + G   V +AT+VAA
Sbjct: 245 RTILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVATNVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ +  ++LV+H +  ++P++ LHR+GRT RAG  G+ + ++    +R AE + R A V
Sbjct: 305 RGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMARAAGV 364

Query: 366 SVVWEP 371
            V   P
Sbjct: 365 VVKGVP 370


>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 515

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 54  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 112

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 113 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 172

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 173 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 287 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 346

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 347 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 406

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 407 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 444


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 141/413 (34%), Positives = 212/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPREAA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
 gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
          Length = 417

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 3/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E GY   T +Q   +   L+ +D+L +AQTG+GKT AF + +   L  +N R +
Sbjct: 12  IAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQNLTEKNIRNN 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L + PTRELA+Q+            +   V  GGV    +   L+ G  I+V 
Sbjct: 72  QIKA---LILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALKKGVDILVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I    +++ +L+  VLDEAD MLD+GF  D++ I+   P KR+ L FSAT  
Sbjct: 129 TPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQTLFFSATFP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I+ LA +   + V+V +A  +     I  +   V   ++   + +IL    + + +VF
Sbjct: 189 DEISKLANSMLTNPVKVEVAPVSATADTIKQKVYFVEKENKLELLTHILMNDISDSVLVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L  H     A+ G  SQ +R NAL   + G+ R+ +ATD+AARGID+
Sbjct: 249 SRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILVATDIAARGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L+ V++ ELS   E  +HR GRTGRAG  G S+
Sbjct: 309 DELKYVVNFELSDVSETYVHRIGRTGRAGADGSSI 343


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/342 (37%), Positives = 181/342 (52%), Gaps = 4/342 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72
           AL+  GY   T +Q   +   ++ KD+L  AQTG+GKT AF L +   L AEN R +P  
Sbjct: 18  ALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPILHRL-AEN-RVAPRP 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++PTRELA Q+G   +   A  G  VAV  GGV    + R LQ G  ++V  P
Sbjct: 76  RTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERALQQGLDVLVAAP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI+ K L++S  +  VLDEAD+MLDLGF   I  I+   P KR+ L FSAT+   
Sbjct: 136 GRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATMPSE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    KD V+V +  +      I    + V    +   +  +         +VF  
Sbjct: 196 IGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFSDPAYTRCLVFTK 255

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L     +  A+ G  SQ +R  AL+  ++G+ RV +ATD+AARGID+  
Sbjct: 256 TKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVATDIAARGIDVDK 315

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  V++ EL   PE  +HR GRT RAG+ G ++ FV    M+
Sbjct: 316 VTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMK 357


>gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 635

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 189/337 (56%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL++ GYV  T +Q   L P L  +D+L  A+TGSGKT  F L L   + ++N  
Sbjct: 13  EPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPLLQKIASQNSE 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P    LAL +APTRELA+Q+ +E+  L     +  AV +GGVS   +   L+ G H++
Sbjct: 73  PAPKQV-LALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQINALKRGVHVL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  +  ++S ++ +VLDEAD M D+GF  DI+ I+   P+ RR  +FSAT
Sbjct: 132 VATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPEARRTALFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I   A +  K+  RV+++S++     ID + ++V  +++ + +  IL     K  I
Sbjct: 192 MPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTILADEACKRVI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L        A  G  +Q  R  AL     G  RV +ATD+AARGI
Sbjct: 252 VFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVLVATDIAARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ ++  V++ ++  +PE  +HR GRT R G  G+++
Sbjct: 312 DVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAI 348


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 177/336 (52%), Gaps = 6/336 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + + +   GYV  T +Q   +   L  +DV+ SAQTG+GKT AF L + S L +  
Sbjct: 8   LSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILSKLESHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV   +      T +  AV  GGV   R+   L+ G  
Sbjct: 68  PR------PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDALKAGVD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+         +K +VLDEAD MLD+GF  D+  I+D  P+ R   +FS
Sbjct: 122 IIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRHTSLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I TL K   K+   + I +       + +    VA   + + +  +L      +
Sbjct: 182 ATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAEDQKSDLLRELLERVNYDS 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+    R   +L  +   V  L    +Q+ER +AL+  R+GR  V +ATD+AAR
Sbjct: 242 VIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLVATDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+ D+  VI+ ++  +PE+ +HR GRTGRA   G
Sbjct: 302 GLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATG 337


>gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
          Length = 560

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 192/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 188/341 (55%), Gaps = 8/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L  +       R
Sbjct: 15  AVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPDGHPDREQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + L  G  +
Sbjct: 75  HGPKQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQALAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL D    K +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSA
Sbjct: 133 LVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQNLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  IT LA     +  R+ +   N     I+ R   +A S +   + +++     +  
Sbjct: 193 TFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQGAWEQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD+AARG
Sbjct: 253 LVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKVRILVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 313 LDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
 gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 183/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +     A     +
Sbjct: 12  LNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQK--ASQQTQT 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    L + PTRELA+Q    +        +  AV  GGV  H + + L +G  I+V 
Sbjct: 70  SRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT +
Sbjct: 130 TPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +VF
Sbjct: 190 PEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHLLHKNNWGQTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGID+
Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L   PE+ +HR GRTGRAG  G++V ++
Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 185/348 (53%), Gaps = 19/348 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN----DRF 69
           AL + G V+   +Q   L   L+  D++  A+TG+GKT+ FG+ L   ++       D  
Sbjct: 61  ALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLERVVGPGEDGWDAV 120

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               AP AL + PTRELAVQV  +LE         V    GG +   +   L  G  +VV
Sbjct: 121 EAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEPQVAALGRGTEVVV 180

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D +R + L++SH++ VVLDEADEMLDLGF  D+E +L ++P +R  ++FSAT+
Sbjct: 181 GTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAATPPQRHTMLFSATM 240

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILR 240
             A+  LA+ +      +      R H   D  A L A+          D+   +  +L+
Sbjct: 241 PGAVVALARRFMSHPTHI------RAHDPNDDGATLKAIRKVVYRAHALDKVEMLARLLQ 294

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    IVF  T+ + ++    L +  F   A+ G+L Q  R  AL+  R G+  V +A
Sbjct: 295 ADGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHGKVDVLVA 354

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ D+  V++ +   + +  LHR GRTGRAG  G +V  +
Sbjct: 355 TDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFV 402


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 181/335 (54%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L A +    PA 
Sbjct: 19  AISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHKLAATHVHPHPAG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   ++       +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  KPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKKRVDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K L++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    ++    +   +  +++      A+VF  T
Sbjct: 199 RDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAWLIKEKQWFQALVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++  + L +H     A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 259 KHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLPVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLV 353


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 211/394 (53%), Gaps = 21/394 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ I  +L  R   +L  +Q    +      DV+  A+TG+GKT+AF L L   L  +N 
Sbjct: 127 PQTIA-SLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVEKL--KNT 183

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
            F     P  L +APTRELA QV  + +   A    +  +C+ GG +   +   ++ G  
Sbjct: 184 EFKAGRPPQVLVMAPTRELAKQVSEDFQ---ASNPRLSTLCVYGGTAYWPQESAIRRGVD 240

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------KR 180
           ++VGTPGR+ D+++   LN+S LK V+LDE D MLD+GF D +E IL +S K        
Sbjct: 241 VLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMDNPGENP 300

Query: 181 RMLMFSATISPAITTLAKNYQKDAV-RVNIASENR--QHSDIDYRAVLVALSDRDNAIVN 237
           + L+FSAT+   +   AK Y K  + RV++  + +    + +++ A+      R   I +
Sbjct: 301 QTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQRAATISD 360

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGR 294
           +++ +  K+   ++F  T+   +     L+  + Q V  L G+++Q +R   L+  RDG+
Sbjct: 361 VVQVYSGKHGRCMIFTETKKDANEMG--LSSSIRQDVQVLHGDIAQNQREITLKGFRDGK 418

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R  +ATDVAARG+D+P+++L++  E   + EN +HRSGRTGRAGR G+SV     N + 
Sbjct: 419 FRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYKPNEEH 478

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
             + + R A +      AP  E I +  A   L+
Sbjct: 479 VLKLIERRAGIKFRRVGAPQPEDIIKTSADDALK 512


>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 645

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 217/431 (50%), Gaps = 22/431 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ + G+   + +Q   +   L+ +DV+  +QTGSGKT AF +     +  +N    
Sbjct: 15  LQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAIEKVDPQNRSVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  L + PTRELAVQV  E+  L   K G+      GG S  R+   L+ GA IV+
Sbjct: 75  ------ILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQFMGLRQGAQIVI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R   L +  +K V+LDEAD MLD+GFR+DIEFIL + P +R+ + FSAT+
Sbjct: 129 GTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPTERQTVFFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  L + Y +D   V I  +      ++     V    +   +  ++  H  K  IV
Sbjct: 189 PRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFYEVDRRFKVELLTRLIDIHDLKLGIV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V      L    +    L G++SQ  R   +   R       +ATDVAARGID
Sbjct: 249 FCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFLVATDVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+++V + +L  + E+ +HR GRTGRAGR G ++  +      + + + R   + +  
Sbjct: 309 VDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQHIERFTKMKIQR 368

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDS----IQGDEKK----MVDVLLAK-HDPEKIAAGF 420
              P+ + +    A       +FLD     +QG E K    +V +LL +  +   IA+  
Sbjct: 369 AKIPTADEVETARAN------VFLDKLRGLLQGGEYKKQDHLVSILLEEGFNSTDIASAL 422

Query: 421 LRIHRAGLCAP 431
           +   +AG  AP
Sbjct: 423 IHQLQAGEAAP 433


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/369 (35%), Positives = 193/369 (52%), Gaps = 10/369 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 78  AVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTLLEQGRAR---AR 134

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV            + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 135 MPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDTKLLRGVDVLIATPG 194

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    L +S ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 195 RLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPEI 254

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248
             L   +  + VRV ++     ++ I    +LVA    D      LR         +N I
Sbjct: 255 QRLVSQFLSNPVRVEVSKPASANTSITQ--LLVASGREDYEKRETLRELIRNADQLQNGI 312

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V+   + L +H F VV L G++ Q  R+ AL   R G A + +A+DVAARG+
Sbjct: 313 VFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEATLLVASDVAARGL 372

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  +  +    + +    ++ 
Sbjct: 373 DIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSLAAIEKLIGNAIP 432

Query: 369 WEPAPSVEA 377
           W+  P  EA
Sbjct: 433 WQGEPLGEA 441


>gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 678

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                F+    P A+   PTRELA+QV   L  +    G+VV    GGV+   + R L++
Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++    
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
                  + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400
              +   ER+ R A +     PAP+ E I +  A+   +D          LF+D  Q  E
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502

Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423
                 LL   DP +I A  L +
Sbjct: 503 ------LLKDADPVEILASALAV 519


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 190/352 (53%), Gaps = 4/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A    G+     +Q   + P L  +D+   AQTGSGKT AF L + S ++A   +   A
Sbjct: 33  KATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRR-A 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ TP
Sbjct: 92  KTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +R   L +S  K +VLDE D MLD+GF +D++ I  ++   R+  +FSAT+   
Sbjct: 152 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMPDE 211

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK   K+ VR+ ++ ++   ++I    V      +   +  +L     K+ I+F  
Sbjct: 212 IAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADAAMKSVIIFSR 271

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R TK L    F+   + G  SQ  R  AL   RDG  R+ +ATD+AARGID+P 
Sbjct: 272 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDVPG 331

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361
           +  V++ +L    E+ +HR GRTGR G  G+++ +    +N + R+ ER+ R
Sbjct: 332 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 383


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356


>gi|184200059|ref|YP_001854266.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580289|dbj|BAG28760.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 535

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 137/384 (35%), Positives = 199/384 (51%), Gaps = 9/384 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+ +   L+  G      +QE  L   L  +DVL   +TGSGKTVAF L L + 
Sbjct: 5   FEDLGVPEALSADLARVGITEAFPIQEKTLPDSLAGRDVLGRGRTGSGKTVAFALPLVAR 64

Query: 62  LLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L       S AS     P  L +APTRELA Q+ R +  L    G+   V  GGVS  R+
Sbjct: 65  LAGMAPGASRASRRAHRPTGLVLAPTRELATQIDRTVAPLAKAAGLNTTVIFGGVSQKRQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L +G  IVV  PGRL D I+   L +  ++  VLDEAD M D+GF   +  IL  +P
Sbjct: 125 EKALADGVDIVVACPGRLEDLIKQGLLTLDDVRVTVLDEADHMADMGFLPVVTRILAKTP 184

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   +  L K + +D V  +  +     + +D++ VLV  +D   A++ 
Sbjct: 185 KGSQRLLFSATLDNGVDVLVKKFLQDPVLHSADNAQAAVTTMDHQ-VLVTHADDKQALIE 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L   G    ++F  T+    +  K L++     V L G LSQ  R   L    DG  RV
Sbjct: 244 AL-ASGTGRRMMFTRTKYRAKKMAKKLSQAGIPAVDLQGNLSQGARDRNLGAFSDGDVRV 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELV+H +  +  ++ LHRSGRT RAG  G  + +     +   +
Sbjct: 303 LVATDVAARGVHVDDVELVVHIDPPAEHKSYLHRSGRTARAGASGAVITIATTEERSDVD 362

Query: 358 RLFREANVSV-VWEPAPSVEAIRE 380
           +L ++A V   V E  P  E ++E
Sbjct: 363 KLMKKAGVKPRVDEVRPDSEVVKE 386


>gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
 gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
          Length = 482

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 4/348 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  IP  + + + E G+   T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL++  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT++  +  LA  +     +V++  E      ++     V+  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   +DG   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 194/363 (53%), Gaps = 13/363 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +  TLLA   
Sbjct: 31  PKVL-KAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI-TLLARGR 88

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G  +
Sbjct: 89  --ARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDKLIDKGVDV 146

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 147 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVNILR 240
           T++P I  +   +     RV +A +      I+   +    S +D         +  ++ 
Sbjct: 207 TMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKRKLLRALID 266

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K  NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   RDG  +  
Sbjct: 267 AEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGFRDGSLKFL 326

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +     +R  E 
Sbjct: 327 IASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVPRDERNLED 386

Query: 359 LFR 361
           + R
Sbjct: 387 IER 389


>gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis
           familiaris]
          Length = 738

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 205/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 140 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K  + VA   GG S   +   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHI 257

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    S R  
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++L+ Y G++  AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  
Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGF 435

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P
Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 495

Query: 350 Q 350
           +
Sbjct: 496 R 496


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 214/397 (53%), Gaps = 14/397 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 3   LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGA 125
           +  S      AL I PTRELA QV  E+  L ++   + VA+ IGG  + R+   LQ   
Sbjct: 63  NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIVIGTPGRIIDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     R+++  E      I    V  + S++   +V  L      
Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQL-CQREG 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 236 SIIIFVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++ FV PQ+ +R      +E  
Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALADKEGE 355

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           ++       SV+  ++R+++++ + P  L +  G +K
Sbjct: 356 LNFDC----SVQ-FKKRNSKKVFKRPSTLKTKYGRKK 387


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 192/344 (55%), Gaps = 5/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I + +   GY   T +Q+  +   L  +DVL  AQTG+GKT AF L L + +    
Sbjct: 14  LSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLINNI---- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D  S   +P  L +APTRELA+QV  + +        +   CI GG     + R L+ G 
Sbjct: 70  DLRSRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQIRALKQGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD+ F+L    ++ + L+F
Sbjct: 130 KVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISEQCQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +L      
Sbjct: 190 SATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRLLEIEETD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S       L    ++V A++G++ Q +R   +   R+ ++ + +ATDV A
Sbjct: 250 GVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDILVATDVVA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           RGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P
Sbjct: 310 RGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVP 353


>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 446

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 207/379 (54%), Gaps = 15/379 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--R 68
           I  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L L   L        
Sbjct: 12  IVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLLHRLSTSTSAPT 71

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            + A+ P+ AL +APTRELA QV   +        +   V  GGV ++ + + L++G  I
Sbjct: 72  TNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINPQIKMLKHGVDI 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH+    +N+S ++ ++LDEAD MLD+GF  DI+ +L   PKKR+ L+FSA
Sbjct: 132 LVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVLPKKRQNLLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGA 244
           T S  I TLA         + +A   R++S ++  A  +   DRD     + ++++ +  
Sbjct: 192 TFSEEIKTLADGLLNAPKMIEVA---RRNSTVEIIAQKIYPVDRDKKHPLLAHLIKTNNW 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   ++  + L +     +A+ G  SQ  R+ AL   +DG+ +V +ATD+A
Sbjct: 249 PQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDGKLQVLVATDIA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF- 360
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++      M R  E+L  
Sbjct: 309 ARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEHEMLRDIEKLIK 368

Query: 361 REANVSVV--WEPAPSVEA 377
           RE    VV  +EP P+  A
Sbjct: 369 RELPKEVVPGFEPDPNARA 387


>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
          Length = 735

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 200/348 (57%), Gaps = 16/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   L    +    + +
Sbjct: 150 LKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETVKKSRS 209

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG S   +   ++NG  I+VGTPGR
Sbjct: 210 PKVLVLAPTRELANQVAKDFKDITRK--LSVACFYGGTSYQSQINHIRNGIDILVGTPGR 267

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K       + L+FSAT 
Sbjct: 268 IKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATC 327

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    +V++  +  Q   + +++ A+    S R   I ++L+ Y G++
Sbjct: 328 PQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSE 387

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     +  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 388 GRAIIFCETKKNVTEM--AMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 445

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F  P+
Sbjct: 446 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 493


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDTE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                +S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 188/338 (55%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++++GY   T++Q   +   L  KDV+ +AQTG+GKT  F L L   L     +  PA
Sbjct: 14  KAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEIL----SKGKPA 69

Query: 73  S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV   +E       +  AV  GGVS+  +   L+ G  I+V 
Sbjct: 70  QRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALKQGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + L+ S L+ +VLDEAD MLD+GF  DI  +L   PK+R+ LMFSAT S
Sbjct: 130 TPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  SD+ + ++++++ +  +  +VF
Sbjct: 190 DDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDLIKDNNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L     +  A+ G  SQ  R+ AL   + G+ +V +ATD+AARGID+
Sbjct: 250 SRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L +  E+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLV 347


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 190/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 44  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 103

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   LQ G  
Sbjct: 104 EELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYEPQIDALQAGVD 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH+  VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 164 VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTPTPRQTMLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++     V V     + Q +  D +  +      D+   I  IL+ + A
Sbjct: 224 ATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDA 283

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G   + +ATDVA
Sbjct: 284 EKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVATDVA 343

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 344 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLV 387


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 188/334 (56%), Gaps = 7/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T VQE ++   LR++D++V +QTGSGKT AF + +   ++ E ++      P AL
Sbjct: 20  GFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPICQEVIWEENK------PQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  +   +     +      G      ++++L    H+VVGTPGR+ DH
Sbjct: 74  VLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKELSQKTHVVVGTPGRVLDH 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  SH+  +V+DEADEML +GF D +E I+ + P  R  L+FSAT++P I  L +
Sbjct: 134 LERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNRVTLLFSATMAPHIQQLCE 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            Y +    ++I ++  + ++I+   +      +   +  +      ++ I+FC+ +  V 
Sbjct: 194 KYLRTPKTIHITTDLSKPNNIEEIGIETHEQTKLAVLEAVTIVENPESCIIFCNRKERVE 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L +  + V  + G++ Q++R   ++  R GR R  +ATDVAARGID+  +  VI+
Sbjct: 254 MVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYLVATDVAARGIDIDHITHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
            ++    EN +HR GRTGRAGR G + +F+ P++
Sbjct: 314 FDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPED 347


>gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 606

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+ + G+   + +Q A++   L   DV+  + TGSGKT AF L     +  +  
Sbjct: 7   PELL-KAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVDTK-- 63

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 A   L + PTRELAVQV  E+  L + K GV+     GG S  R+ R L  GA 
Sbjct: 64  ----LKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGAQ 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ DH+    L +  L  V+LDE D MLD+GFRDDIE IL S P++R+ L FS
Sbjct: 120 VVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  +   +  +   V I ++ +    +D     V    +   +  ++  +  + 
Sbjct: 180 ATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFRY 239

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FCST+  V    + L    +    L G+++Q +R+  ++  +       IATDVAAR
Sbjct: 240 GIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAAR 299

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DLE+V + +L ++ E+  HR GRTGRAGRKG +   +      + + + R A + 
Sbjct: 300 GLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARLD 359

Query: 367 VVWEPAPSVEAIRE 380
           +  E  PS++ + E
Sbjct: 360 IRRERVPSLDQVEE 373


>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 423

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 192/376 (51%), Gaps = 9/376 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL +   LLA  D   P  
Sbjct: 20  TLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLLATKDNVIPNP 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   +      T + V V  GGVS+  +  +L+ GA I+V TP
Sbjct: 80  KLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQTDNLRAGADILVATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + +S  + +VLDEAD MLD+GF  DI+ IL    + R+ L FSAT    
Sbjct: 140 GRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNEVRQTLFFSATFDNK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +    + +   N     +      V    +   +  ++  +  +  +VF  
Sbjct: 200 IKAIAHRMMQSPSEIQVTPTNSTAETVKQMVYPVDKKRKSELLAYLIGSNNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARGID+  
Sbjct: 260 TKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIQQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           LE V++ ++    E+ +HR GRTGRAG  G+++ ++  +   +    ERL  +  +   W
Sbjct: 320 LEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLLGAIERLL-DTRLPQEW 378

Query: 370 ----EPAPSVEAIRER 381
               EP+P  +   ER
Sbjct: 379 LKGFEPSPEQDVSPER 394


>gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 517

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/335 (38%), Positives = 189/335 (56%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           GY   T +Q   +   L  KDV+  AQTG+GKT AF L L   LL +N   +P   P+  
Sbjct: 20  GYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLLQRLLNDN---APTRGPIRV 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELAVQ+ +    L  +TG+  AV IGGV    + + L+  A + V  PGRL D
Sbjct: 77  LVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKALRQ-ATVAVACPGRLVD 135

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +    +++S + A+VLDEAD MLD+GF  D+  ++   P++R+ ++FSAT+   I +LA
Sbjct: 136 LMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQNMLFSATMPAEIRSLA 195

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  +D V V + S     + + +    VA S + + +  +L   G  +A+VF  T+   
Sbjct: 196 ESGLRDPVTVQV-SNTAPAATVSHALYPVAGSRKQDLLEKLLNDLGKNSALVFTRTKHRA 254

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + LA   F V +L G LSQ  R  A+   R+G+ RV +ATD+AARGID   + LV+
Sbjct: 255 KGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRVMVATDIAARGIDCERVSLVV 314

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + +L    E   HR GRTGRA R G +V  V P++
Sbjct: 315 NFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPED 349


>gi|221123568|ref|XP_002167666.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Hydra magnipapillata]
          Length = 635

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 203/363 (55%), Gaps = 11/363 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G   L  VQ    N  L   DV+V A+TG+GKT+ F L +   L    D      +PL L
Sbjct: 70  GVNKLFPVQYTTYNAILDGSDVIVQARTGTGKTLGFALPVLEKL-KNIDSEQKRKSPLVL 128

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ +E+E  Y    + ++   GG    ++ ++L+NG   +VGTPGR+ DH
Sbjct: 129 TLAPTRELAIQICKEVE-KYKPRQMTISCFYGGAPYDKQEQELRNGIDFLVGTPGRILDH 187

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSATISPAITT 195
           I    L++S L+ V+LDEAD M+D+GF++ +E IL    +   K + L+FSAT+   +  
Sbjct: 188 INKGRLDVSKLQYVILDEADRMMDMGFQESMEEILSYAYTEDNKPQTLLFSATVPAWLQK 247

Query: 196 LAKNY-QKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVF 250
            ++ Y  K+  + ++    +N+  + ++++A+     DR + I +I++ +  K    I+F
Sbjct: 248 NSEKYLTKNLKKFDLIGRDKNKGATTVEHKAIKCTYWDRPSTIKDIIQQYSGKFGKTIIF 307

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST+   +        ++   V L G++ Q++R   LQ  R+G+    IATDVAARG+D+
Sbjct: 308 TSTKQEANELALNSVINMDSQV-LHGDIQQKQRELTLQSFRNGKFNCLIATDVAARGLDI 366

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+++LVI  E   + ++ +HR+GRTGRAGRKG+ +       +     +  +A +S    
Sbjct: 367 PEVDLVIQTEPPKDVDSYIHRAGRTGRAGRKGVCIIFYKPGQEYGVAAVEHKAGISFTRI 426

Query: 371 PAP 373
            AP
Sbjct: 427 GAP 429


>gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 678

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 225/443 (50%), Gaps = 37/443 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                F+    P A+   PTRELA+QV   L  +    G+VV    GGV+   + R L++
Sbjct: 150 KLPSHFTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++    
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
                  + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 GAERPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400
              +   ER+ R A +     PAP+ E I +  A+   +D          LF+D  Q  E
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMD--QAAE 502

Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423
                 LL   DP +I A  L +
Sbjct: 503 ------LLKDADPVEILASALAV 519


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 199/379 (52%), Gaps = 16/379 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTMLEQGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV            + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLLRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    L +S ++ +V+DEAD MLD+GF  DIE +    P  R+ L FSAT+ P I
Sbjct: 132 RLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFSATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAI 248
             L   +  + V+V  +  +   ++I     LVA    D A    LR         +N I
Sbjct: 192 QRLVAQFLSNPVQVEASRPSSTAANITQ--FLVACGKEDFAKRETLRELINSADNLQNGI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ ++ V+   K L  H F VVAL G++ Q+ R  AL   R G A + +A+DVAARG+
Sbjct: 250 IFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA--ERLFREANV 365
           D+P +  V + +   + E+ +HR GRTGRAGR G +   V P + +  A  E+L      
Sbjct: 310 DIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAIEKLI---GR 366

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           S+ W    S++A+   +A+
Sbjct: 367 SIDWREGSSLDALPPSEAR 385


>gi|170782512|ref|YP_001710845.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157081|emb|CAQ02256.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 761

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 6/363 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I   L E G  +   +Q A +   L  +DVL   +TGSGKT+AFG  L   LL END 
Sbjct: 385 QNIVRVLEELGASSPFPIQAATIPDVLAGRDVLGRGRTGSGKTIAFGAPLVERLL-ENDG 443

Query: 68  --RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APTRELA+Q+ R ++ +    G+      GGV   ++   LQ G 
Sbjct: 444 AKNRKMGRKPRALILAPTRELAMQIDRTVQPIARSVGLFTTTIFGGVPQFKQVGALQRGV 503

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I    L++S +   VLDEAD M DLGF + ++ IL    K  + L+F
Sbjct: 504 DILIATPGRLEDLIDQGRLDLSEIVVTVLDEADHMCDLGFLEPVQRILRQVKKDGQRLLF 563

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL   +        +A E++  S ID+R +L+   D+  AI+  L   G  
Sbjct: 564 SATLDKGVATLVNEFLPSPSVHEVAGEDQASSTIDHRVLLIEQRDK-AAIIEQL-SSGEG 621

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  TRA   +    L +      +L G+L+Q  R+  LQ++  G+ RV +ATDVAA
Sbjct: 622 KTLIFARTRAFAEQLADQLEDAGIPATSLHGDLNQARRTRNLQLLTSGKVRVLVATDVAA 681

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVI A+     ++ LHR+GRTGRAG++G  V +I +  +RR + L   A +
Sbjct: 682 RGIHVDDIGLVIQADAPDEYKSYLHRAGRTGRAGKQGTVVTLITKARRRRMDDLLGRAEI 741

Query: 366 SVV 368
              
Sbjct: 742 KAT 744


>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
           thailandensis MSMB43]
          Length = 402

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 200/372 (53%), Gaps = 11/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +     T  AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + LA+     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQE 372

Query: 367 VV--WEPAPSVE 376
           V+  +EP P+ +
Sbjct: 373 VIPGFEPDPNAK 384


>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 187/338 (55%), Gaps = 3/338 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY N T +Q   +   L   D+L  AQTG+GKT  F L +   L       + AS
Sbjct: 15  AVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASAS 74

Query: 74  A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           A  P+ AL + PTRELA QV   +        +  AV  GGV ++ + + L++G  I+V 
Sbjct: 75  AQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKHGVDILVA 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++   +N++H++ +VLDEAD MLD+GF  DI  +L + PK R+ L+FSAT S
Sbjct: 135 TPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPKNRQNLLFSATFS 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA         + +A  N     I+ +   V    +   + ++++ +     +VF
Sbjct: 195 NEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHLIKSNNWSQVLVF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+
Sbjct: 255 TRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDIAARGIDI 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 315 DQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 352


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3]
 gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 439

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 195/341 (57%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A    L ST + EN
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++   L   + + V +  GG S   +R+ L  G  
Sbjct: 80  RQLN---QPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRKTLDQGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GR+ D++R   +N+  ++AVVLDEAD M DLGF  DI F+    P   +R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSADQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  + V+V IA E +   +I       +  D+   ++ ++     
Sbjct: 197 FSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATDVA
Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357


>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
          Length = 517

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 56  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 114

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 115 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 174

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 175 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 228

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 229 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 288

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 289 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 348

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 349 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 408

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 409 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 446


>gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 416

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 197/372 (52%), Gaps = 8/372 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +Q+  +   +   D+L +AQTG+GKT  F L L   L        
Sbjct: 19  ILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLHKLSQTKTDGK 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL + PTRELA QV   L      TG+   V  GGV ++ +   L+ G  I+V 
Sbjct: 79  PVIK--ALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALRRGVDILVA 136

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH R   +++S +  ++LDEAD MLD+GF  DI+ ++   P+KR+ L+FSAT S
Sbjct: 137 TPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTLLFSATFS 196

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L++ + +    + +A +N     I+ R   V    +   +  ++     +  +VF
Sbjct: 197 SEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPVDKKRKRELLSYLIGSRNWRQVLVF 256

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L +     +A+ G  SQ  R+ AL   + G+ RV +ATD+AARGID+
Sbjct: 257 TRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLVATDIAARGIDI 316

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFR-EANVS 366
            +L  VI+ EL    E+ +HR GRTGRAG +G +   V V    + R  E+L + E    
Sbjct: 317 DELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDIEKLTKNEIPRE 376

Query: 367 VV--WEPAPSVE 376
           V+  +EP PS++
Sbjct: 377 VIPGFEPDPSIK 388


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   LL++  +  
Sbjct: 23  ILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE-LLSKGQKAQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  ++V 
Sbjct: 82  -AGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVDVLVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFSAT S
Sbjct: 141 TPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFSATFS 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    +   +  +++ H  +  +VF
Sbjct: 201 DEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQVLVF 260

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AARG+D+
Sbjct: 261 SRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDI 320

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 358


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +ALSE+G  +  ++QE  L   L  +D++  A+TG GKT+ FG+ L   +    D   
Sbjct: 19  IVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLDRVFDAADVAE 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QVG +LE    +T V V    GG     + + L  G  +VVG
Sbjct: 79  LDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQVLTAGVDVVVG 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE +L +   + + L+FSAT+ 
Sbjct: 139 TPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQHQTLLFSATMP 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248
             + TLA+ +    + +     N  H+      V+      D   +    L+       I
Sbjct: 199 GPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARALQAKERGKTI 258

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ + +   + LA   F+V  + G+L Q  R  +L M R+GR  + +ATDVAARG+
Sbjct: 259 IFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDILVATDVAARGL 318

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ +    P   +HR GRTGRAG  G ++ ++
Sbjct: 319 DIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLV 358


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 192/347 (55%), Gaps = 14/347 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY   T +Q+  +   +   DV+ SAQTG+GKT AF L    TL   
Sbjct: 7   NLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPALHTLA-- 64

Query: 66  NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERR 119
               +PA      P  L + PTRELA+QV  E    Y K    + V   +GG+    + +
Sbjct: 65  ----TPAQIRSRGPRVLVLTPTRELALQVS-EAAKKYGKYLPRINVVSILGGMPYPLQNK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+V TPGRL DHI+   ++   L+ +VLDEAD MLD+GF +D+E I  ++P  
Sbjct: 120 LLSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPAT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNI 238
           R+ L+FSAT+  AI  +A    K   R+ ++S   +  +I+ R      +S ++  + ++
Sbjct: 180 RQTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    K AIVF +T+         L    +   AL G+++Q+ER+  L  +R+G  RV 
Sbjct: 240 LRDETLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 300 VATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAV 346


>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
 gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
           norvegicus]
          Length = 455

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 418

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL E GY   T +Q   +   L+  D+L  AQTG+GKT AF + +   +L+E
Sbjct: 7   NIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPILQ-ILSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N     +    +L + PTRELA+Q+G   +     TG+   V  GGV+ + +   L  G 
Sbjct: 66  NKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTASLLRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    L++  ++ +VLDEAD MLD+GF  D++ IL   PKK++ L F
Sbjct: 126 DILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKKQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA     +  +V++   +     I+     V   ++++ ++++L+    K
Sbjct: 186 SATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIYFVDKGNKNSLLLDLLKDKNIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VF  T+    +  K L +H     A+ G  +Q  R  AL   +    RV +ATD+AA
Sbjct: 246 TSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ DLE VI+ E+ + PE  +HR GRTGRAG KG ++
Sbjct: 306 RGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTAL 345


>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
 gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
 gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
 gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
           musculus]
          Length = 455

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 596

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 186/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G V+   +QE  L   L   DV+  A+TG+GKT+ FGL L   ++   D    R
Sbjct: 74  EALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVVVPADVEAGR 133

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     +P AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 134 ARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 193

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    K L++S +KA+VLDEADEMLDLGF  D+E I++  P KR+ ++F
Sbjct: 194 DVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVEKIMNLLPAKRQTMLF 253

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +   SE+ +    ++I          D+   +  IL+  
Sbjct: 254 SATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVFRAHNMDKPELVSRILQAE 313

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A++FC T+ + +   + L    F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 314 GRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 373

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAG KG +V ++
Sbjct: 374 VAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTLV 419


>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 417

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 196/383 (51%), Gaps = 10/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   +  + 
Sbjct: 10  IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA QV   L      T + +    GG S+  ++  L+ GA 
Sbjct: 70  RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  +++++FS
Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       V V ++  N     +      V    +   +  ++     + 
Sbjct: 186 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--RAERLFREAN 364
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ Q+ +   RA     +  
Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAIETLLDQR 365

Query: 365 VSVVW----EPAPSVEAIRERDA 383
           +   W    EP+   E   ERD 
Sbjct: 366 LPQEWLEGFEPSLIEEVEPERDG 388


>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+SE+GY   + +Q+  +   L+ KDVL SAQTG+GKT  F L +   L+  N+     
Sbjct: 14  KAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRLI--NNPKQGR 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+   +        +   V  GGV+ + + R L+ G  I+V TP
Sbjct: 72  RKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT +  
Sbjct: 132 GRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLFSATFNTD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I   A +   + V V    EN     +D ++  V  S +   ++  +R       +VF  
Sbjct: 192 IKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIREGNWDQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R ++ L +      A+ G  +Q  R  AL   + G+ RV +ATD+AARG+D+P 
Sbjct: 252 TKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATDIAARGLDIPL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVW 369
           L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++     +  R  E+L  E   S V 
Sbjct: 312 LPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKLLGEKLHSEVL 371

Query: 370 E---PAPSVEAIRERDAQ 384
           E   P  ++  I++  A+
Sbjct: 372 EGFQPTDTLAQIKKEAAE 389


>gi|297202208|ref|ZP_06919605.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148059|gb|EDY61279.2| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 723

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/326 (38%), Positives = 179/326 (54%), Gaps = 22/326 (6%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL L   +    D    R  P     AP AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEDLTDAPQALVVVPTRELCTQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L+       V V    GG +   +   L+ G  +V+GTPGRL D    K LN+SH+KA
Sbjct: 71  NDLQTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLSHIKA 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I++  P +R+ ++FSAT+  A+ +LA+ Y      +N  S
Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINLLPARRQTMLFSATMPGAVISLARRYMSQPTHINATS 190

Query: 212 EN---------RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
            +         +QH    YRA  +   D+   +  IL+  G    +VFC T+ + +    
Sbjct: 191 PDDAGRTVANTKQHV---YRAHNM---DKPEMVARILQAEGRGLVMVFCRTKRTAADLAD 244

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +  
Sbjct: 245 QLKQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQCP 304

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
              +  LHR GRTGRAG KG+++ ++
Sbjct: 305 EEEKTYLHRIGRTGRAGAKGIAITLV 330


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 461

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/371 (34%), Positives = 197/371 (53%), Gaps = 3/371 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+ + Y + T +Q   +   L+ KD+   AQTG+GKT AF L  +    A N + +
Sbjct: 12  ILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALP-SLDHFARNPKPT 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P      L ++PTRELA Q+ +          + V V  GGV ++R+ R L  G  IVV 
Sbjct: 71  PLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALGRGVDIVVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  +   I   +  VLDEAD+M+D+GF   ++ I    PK+R+ L FSAT+ 
Sbjct: 131 TPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +  D V+V++A ++     +  +A  V   ++   +   +R      A++F
Sbjct: 191 GEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIRSEDIDRALIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  + L     Q VA+ G  SQ +R+ ALQ  R G  ++ +ATD+AARGID+
Sbjct: 251 TRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ EL + PE  +HR GRT RAG +G+++  +  + +   + + R   V +   
Sbjct: 311 SGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERTTKVKLDVV 370

Query: 371 PAPS--VEAIR 379
           P P   VEA+R
Sbjct: 371 PLPENFVEAVR 381


>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 469

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 190/345 (55%), Gaps = 12/345 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  A++ +GY   + +Q   +   L  +DVL  AQTG+GKT AF L L   L     
Sbjct: 10  PEIV-SAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQRLSESEF 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           +N R      P AL +APTRELA QV + +   Y K   + + C  GGV+++ +   L+ 
Sbjct: 69  KNKR------PRALILAPTRELAAQVHQSI-LDYGKGVDLHSACFFGGVNINPQISKLRR 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D  + +  N+  ++ +VLDEAD MLD+GF  DI  IL   P  R+ L
Sbjct: 122 GLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQNL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT +  +  LA +  ++ V V +A  N     I   A  +   ++  A+ N+++   
Sbjct: 182 FFSATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQEAYSIGQKNKREALSNLIKDGD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  +VF  T+   +R  K L        A+ G  SQ  R  ALQ  +    RV +ATD+
Sbjct: 242 WKQVLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLVATDI 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ DL  V++ EL + PE+ +HR GRTGRAG+KG ++ ++
Sbjct: 302 AARGIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLV 346


>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 516

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 45  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103

Query: 59  -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                  A     + DR +    P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 218 LDMGFIDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           AGR G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 435


>gi|41407579|ref|NP_960415.1| hypothetical protein MAP1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395932|gb|AAS03798.1| hypothetical protein MAP_1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 497

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/365 (36%), Positives = 191/365 (52%), Gaps = 4/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I +AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L   L   
Sbjct: 54  GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 113

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N R  PA  P  L +APTRELA Q+   LE L A  G+ V+   GGVS HR+   L+ G 
Sbjct: 114 NRR--PAR-PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVTALKAGV 170

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +R + + +  ++  V+DEAD M DLGF   +  IL ++P   + L+F
Sbjct: 171 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 230

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   + +DAV  ++   N   S++ +    V        +V+ L   G  
Sbjct: 231 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSVQAKKELVHRL-ASGTG 289

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  + L E     V L G LSQ  R   L M   G ARV +ATD+AA
Sbjct: 290 RRILFLRTKHQARKVARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 349

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    +     L R+A +
Sbjct: 350 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMRKAGI 409

Query: 366 SVVWE 370
            V  +
Sbjct: 410 DVAPQ 414


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/408 (32%), Positives = 218/408 (53%), Gaps = 16/408 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A ++ G+   T +QE  +   +  +D++  AQTG+GKT AF + +   L        
Sbjct: 13  IIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPMIENLERH----- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELAVQV  E+  +    G+      GG  ++R+ R L+N   I+VG
Sbjct: 68  -AEGIGGLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQIRALRNRPQIIVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+R   + + H+   VLDEADEML +GF +DIE IL     K + L+FSAT+ 
Sbjct: 127 TPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQHKHQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  L+K +  +   ++I ++     + +   V +    + + +  +L       AIVF
Sbjct: 187 QSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVELPERQKFDVLCRLLDIQSPDLAIVF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    + L +  +    + G+L+Q  R + L+  ++G   + +ATDVAARG+D+
Sbjct: 247 GRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDILVATDVAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVSV 367
             +  + + ++  +PE+ +HR GRTGRAG+ G++V FV P+  N  R  E++ +     +
Sbjct: 307 SGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRLIEQVTKR---RI 363

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK---MVDVLLAKHD 412
           V +P P++  + E   QR+  D L   S   + ++   + D LLA +D
Sbjct: 364 VRKPMPTIHEVLE-GQQRLAVDLLMKASEDPESRRYTELADELLASND 410


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 11/367 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+   GY   T +QE  + P L+ +D+L  AQTG+GKT AF L +   L     R
Sbjct: 10  QKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPMLCRLEQGRAR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L + PTRELA QV        A   + VA+ IGG++   +   +  GA ++
Sbjct: 70  ---ARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAKIMRGADVL 126

Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL D   RGK L +++++ +V+DEAD MLD+GF  DIE I    P  R+ L FSA
Sbjct: 127 IATPGRLLDFFDRGK-LLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILR-YHG 243
           T+ P IT L + +  + VR+ +A  +   + I  R  LVA    +++   +  +LR    
Sbjct: 186 TMPPEITRLTEAFLHNPVRIEVARASSTAATI--RQALVATHGHAEKRETLRRLLRGAEN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L +H F   AL G++ Q  R  +L   ++G   + + +DV
Sbjct: 244 FKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALLVCSDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G +V ++    ++  +++    
Sbjct: 304 AARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQIETLI 363

Query: 364 NVSVVWE 370
              + WE
Sbjct: 364 GNKIDWE 370


>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 454

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 54  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 112

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 113 AQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 172

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 173 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 226

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 227 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 286

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 287 QTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 346

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 347 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 406

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 407 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 444


>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 451

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 356


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 207/398 (52%), Gaps = 8/398 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q   +   L  +D++  A TG+GKT AF L + S +  +       S  + L
Sbjct: 38  GFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLSNMKLD------GSVEM-L 90

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I PTRELA QV  E+       GV      GG S  R+   +  GA +VV TPGR+ D 
Sbjct: 91  VITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDLIGRGASVVVATPGRMLDL 150

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++   LN      VVLDEADEMLD+GF DDI  I    P  R+ L+FSAT+   I  LA 
Sbjct: 151 LKRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNRQTLLFSATMPQPIKNLAN 210

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              KD   V+I      ++DI+    ++   +RD+AI+ ++     K A+VFC T++ V 
Sbjct: 211 RILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRLMDAEDTKKAVVFCRTKSEVD 270

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R + VL+   +    L G++ Q++R   ++  ++   +V +ATDVAARGI + ++  V +
Sbjct: 271 RLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLVATDVAARGIHVNNISHVFN 330

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+ ++   S+     PS   +
Sbjct: 331 YHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIKQKVGTSMNHAFVPSKNDL 390

Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +     ++++  +    I  +  K++D L    D E I
Sbjct: 391 KASTVDKMVKS-IEDQKIYDEAHKVLDRLKEDIDEETI 427


>gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3]
 gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 437

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 201/352 (57%), Gaps = 11/352 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  
Sbjct: 9   KKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATF 68

Query: 60  STLLAENDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + LL E    +P     + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG    
Sbjct: 69  NHLLTEA---APTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R+ L  G  I++GT GR+ D++R   +++S ++AVVLDEAD M DLGF  DI F+   
Sbjct: 126 AQRKVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRR 185

Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P  K R  ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++  
Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L     + AIVF +T+ S  +    L     +V  L+G++ Q++R   L+    G
Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSG 305

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              V +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 306 DIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 192/343 (55%), Gaps = 6/343 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G    T VQ   L   L  KD++ S++TGSGKT+AF L     +++   R    
Sbjct: 14  DSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAMQRVIST--RALSK 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV  +L  L A T       +GG + + + + L    H +V TP
Sbjct: 72  KDPRVLILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAKALARDPHFIVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191
           GR+ DH++ + L ++ L+ +VLDEAD MLDLGF   ++ I D++  KRR  LMFSAT+  
Sbjct: 132 GRIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLMFSATLDH 191

Query: 192 -AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIV 249
            +I  +A    K    V+I     +H DI+ R +LV   D   A++ +IL     K  IV
Sbjct: 192 NSIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILVDHLDHKQAVLQHILSQETHKQVIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR+   R   +LA   F   ALSG+L Q  R+  +     G++++ + TDVA+RG+D
Sbjct: 252 FTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQILVTTDVASRGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           L ++ LVI+ ++    E  +HR GRTGRAG KG +V FV P++
Sbjct: 312 LINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKD 354


>gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
          Length = 436

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+  G     ++QE  L   L  +D++  A+TG GKT  FG+ L   +    D   
Sbjct: 19  ITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFDAADVAE 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QVG +L+ L     + VA   GG     +   L++G  +VVG
Sbjct: 79  LDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVDVVVG 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE +L +     + ++FSAT+ 
Sbjct: 139 TPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPHQTMLFSATMP 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248
            A+ TLA+ +    V +         +      V+      D + V   IL+  G    I
Sbjct: 199 GAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTARILQAEGRGKTI 258

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ + +     LA+  F+V  + G+L Q  R  +L   R G+A + +ATDVAARG+
Sbjct: 259 IFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILVATDVAARGL 318

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++
Sbjct: 319 DIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLV 358


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 167/574 (29%), Positives = 265/574 (46%), Gaps = 81/574 (14%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+   G+   T VQ   +   L  +DV+  AQTG+GKT AFGL L  ++  +  
Sbjct: 24  PRVL-SAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLLQSVDPD-- 80

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
                +A   + + PTRELA+QV   L    A   G+ V    GG     ++R L  GA 
Sbjct: 81  ----VAAVQVVVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQRALARGAQ 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DHI  + L +  ++ +VLDEADEML +GF +D++ +L  +P  R++ +FS
Sbjct: 137 VVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPAGRQVALFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +A  +  + V V ++ ++     +     +V    +  A+  +L    A  
Sbjct: 197 ATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPYRHKAGALARVLAVSDADA 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  TR +      VL +       +SG+++Q +R   ++ +R G   V +ATDVAAR
Sbjct: 257 AIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVLVATDVAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA 363
           G+D+  + LV++ +L   PE  +HR GRTGRAGR G ++ FV P      R+ ER  R  
Sbjct: 317 GLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQIERTTRTP 376

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V +       V A R                           LL + D  ++AAG L +
Sbjct: 377 LVEITIPTPAQVSAHR------------------------ATALLGRTD-ARLAAGRLDV 411

Query: 424 HRAG----LCAPEEITPVSLVS-------------------------GRDRFRDDSRAFK 454
            R      L A  ++ PV L++                          R+   +++R  +
Sbjct: 412 VRTAVLEHLAAHPDVDPVDLLTAVAALAVGDEGPSAEVEYLDDAVRRARETRHEETRGGQ 471

Query: 455 VGGGSR----DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
           V G  R        G   + ++VG +   +   L+  L    G+  + +G I +      
Sbjct: 472 VAGNRRRPGTTGPSGRPRYRVAVGERDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFAL 531

Query: 511 VEV----SADGVDLLRRT--------VKLDKGIQ 532
           V++    + + VD L RT        ++LD G Q
Sbjct: 532 VDIPSGLTPEVVDRLGRTRVAGRPLRIRLDTGPQ 565


>gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
 gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
          Length = 481

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 16/370 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +      G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  Y K    + I +       I++  + V   ++ + + +I       + I+FC T
Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   + G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370
             VI+ ++    E+ +HR+GRTGRAG  G ++ FV P       ER   E    + +E  
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366

Query: 371 --PAPSVEAI 378
              APS E +
Sbjct: 367 KIEAPSKEEL 376


>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 423

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61
           N+ + + +A+S+ G+   T +Q   L   L  +D++  AQTG+GKT AF +    +L  T
Sbjct: 17  NLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + E +RF  AS P  LA+APTRELA+Q+ ++ E L   TG  V   +GG++  ++R  L
Sbjct: 77  PIDEKERF--ASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQREQL 134

Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPK- 178
           QN    I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+   +PK 
Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKD 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT +  +  LA  + ++A  V I  E +    ++    LV+ +++   +VN 
Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVFLVSDNEKLPVLVNY 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + AIVF + R       + L     +V  +SGE++Q +R   L   + G+ +V 
Sbjct: 255 LKRPEVEKAIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFKKGQIQVL 314

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           +ATDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+SV        F +P+
Sbjct: 315 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEEDAFALPE 374

Query: 351 NMQRRAERL---FREANVSVVWEPAP 373
             +  +++L     + N++V  +  P
Sbjct: 375 IEKYISQKLKTAVPDENLTVAMDNPP 400


>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
 gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
          Length = 454

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 184/341 (53%), Gaps = 3/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ G     ++QE  L   L   D++  A+TG GKT+ FG+ L   +  +     
Sbjct: 18  ICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVFDDARIPE 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     A+ I PTREL VQVG +L      T + V    GG     +   L  G  I+VG
Sbjct: 78  PDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQLDRGVDIIVG 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   L +S +K +VLDEADEMLDLGF  DIE IL + P +R+ ++FSAT+ 
Sbjct: 138 TPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDERQTMLFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNA 247
             I TLA+ +    V +   S   + +  +    +V  S   D+ + I  IL+ +G    
Sbjct: 198 GPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIARILQANGRGRT 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+   +   + L E  F V A+ G++ Q  R  +L   R+G   V +ATDVAARG
Sbjct: 258 IIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVDVLVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ ++  +    +HR GRTGRAG  G++V ++
Sbjct: 318 IDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLV 358


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 192/349 (55%), Gaps = 14/349 (4%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+I   P ++  AL E GY   T++Q A +   +  KD+L +AQTG+GKT AF L +  
Sbjct: 6   FESISLNPSIL-RALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILH 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTGVVVAVCIGGVSVHR 116
            L  EN  +    AP AL + PTRELA+Q+   +     +L  +TGV+    +GGV  H 
Sbjct: 65  RL-GENRSYD-IRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVI----MGGVPAHP 118

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+    I+V TPGRL D      + +  ++  VLDEAD MLD+GF DDI  I    
Sbjct: 119 QIKMLRRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQ 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  + L+FSAT+SP I  LA    ++ VR+ +A  +    +I  + + V  +++   + 
Sbjct: 179 PRDHQTLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLH 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+ + +  K A+VF  T+   +   + L        A+    SQ+ R  AL +   G+  
Sbjct: 239 NLFKENDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKIN 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATD+AARGID+  +  VI+ EL  +PEN +HR GRT RAG  G ++
Sbjct: 299 VLVATDIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTAL 347


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 191/341 (56%), Gaps = 8/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSA
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  IT LA     +  R+ +   N     I+ R   +A S + + + +++ +   +  
Sbjct: 193 TFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHLITHGAWEQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AARG
Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           K279a]
 gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 458

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/379 (34%), Positives = 201/379 (53%), Gaps = 15/379 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILNGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++     R        AL + PTRELA QVG+++  L   TG+     +  V      
Sbjct: 61  LQSIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112

Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             L     +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            + K R+ L+FSAT   +I  +A++  +DAV V +   + Q   I +    V  + R  A
Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLRDAVEVTVEGAD-QAPAIRHLFCEVEPAHRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +  
Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + 
Sbjct: 292 CNVLVASDVAARGLDVEDLAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKT 351

Query: 355 RAERLFREANVSVVWEPAP 373
           RAE +  +    + W+  P
Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370


>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 431

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 197/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+S+ GY  +T VQ   +    R  DVL SAQTG+GKT AF L +   L+
Sbjct: 6   FDFAPEIL-RAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPILQRLV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +     P++A + L + PTRELA QV   +        V V   +GG     + + L+ 
Sbjct: 65  DKPAELQPSNARV-LILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKKLKA 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHI+V TPGRL +H+    L++S ++ +VLDEAD +LD+GF  D++ IL +  K+R+ L
Sbjct: 124 GAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKERQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT S  +  LA N   D  +  I S N+Q+S  D   +    V    +   +  ++ 
Sbjct: 184 LFSATFSDGVKKLA-NVMLD--KPQIISVNKQNSTADTVTHTVYPVEQKRKRELLSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF STR S       L     +   + G+ +Q  R  AL+   +G+ RV +A
Sbjct: 241 KQNWPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+PDL+ V++ +L    E+ +HR GRTGRAG+ GM++  + +  +R
Sbjct: 301 TEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEER 354


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 130/343 (37%), Positives = 180/343 (52%), Gaps = 4/343 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  GY   T +QE  +   ++ KD+L  AQTG+GKT AF L +   L AEN R +P 
Sbjct: 29  QALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHRL-AEN-RIAPK 86

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                 L ++PTRELA Q+G   +   A  G  VAV  GGV    + R LQ G  I+V  
Sbjct: 87  PRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQQGLDILVAA 146

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+ K L++S  + +VLDEAD+MLDLGF   I  I+   P KR+ L FSAT+  
Sbjct: 147 PGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFFSATMPT 206

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    KD V+V +  ++     I    V V    +   +  +         +VF 
Sbjct: 207 EIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMFSDPEYTRCLVFT 266

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +    L     +  A+ G  SQ +R   L   + G+ RV +ATD+AARGID+ 
Sbjct: 267 KTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATDIAARGIDVD 326

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +  V++ EL   PE  +HR GRT RAG  G ++ FV    M+
Sbjct: 327 GVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMK 369


>gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
 gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
          Length = 458

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/331 (38%), Positives = 188/331 (56%), Gaps = 7/331 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E LS  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  R    
Sbjct: 14  ENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L      V V    GGV +  +   L++GAHI+VGT
Sbjct: 72  ----TLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+FSAT   
Sbjct: 128 PGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPE 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I ++AK    + V V  A  + +++   +   L     R  A+  +L  H  ++A+VFC
Sbjct: 188 QIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPESAVVFC 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAARG+D+ 
Sbjct: 248 NTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDID 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            L+ V +  ++ + E  +HR GRTGRAG KG
Sbjct: 308 ALDAVFNYHVAYDTEVHIHRIGRTGRAGSKG 338


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 183/338 (54%), Gaps = 4/338 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 153 PDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 391

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ARG+D+ DL++V++ ++  N E+ +HR GRTGRAG+ G
Sbjct: 452 ARGLDIKDLDVVVNYDMPLNIEDYVHRIGRTGRAGKTG 489


>gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 460

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 191/336 (56%), Gaps = 8/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++RG      +QE ++   L   DVL+ + TGSGKT+AFG+ L   + A + R     
Sbjct: 17  ALTKRGIATAFPIQELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLMDRIEATDKR----- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELA+Q+  E   +     + +    GGV + R+ R+    +HI+V TPG
Sbjct: 72  -PSALVLAPTRELALQIVDETREIAHARALSITAVYGGVGLERQARNAAR-SHILVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ +   ++++K ++LDEAD MLD+GFR  ++ I+ ++   R+ ++FSAT+   +
Sbjct: 130 RLEDLLQRRAFTLANVKLLILDEADRMLDMGFRPAVDRIVKATNANRQTMLFSATLKGEV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A  Y  DA R  +A    + +DID+R + V    + + +V  LR+HG    +VF  T
Sbjct: 190 DRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEHKLDHLVQELRHHGRGLTLVFVRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  K L     + VA+ G+ +Q +R  AL     G   V +ATDVAARGID+  +
Sbjct: 250 KRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLVATDVAARGIDVNGV 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
             VI+ +   + E  +HR GRTGRAG  G+ V FV+
Sbjct: 310 SHVINFDAPEDREGYVHRIGRTGRAGATGIGVTFVM 345


>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
          Length = 475

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/398 (35%), Positives = 207/398 (52%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----------- 56
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 48  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 106

Query: 57  --ALASTLLAEND-------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
             AL      E         R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 107 TQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 166

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 167 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 220

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 221 LDMGFIDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 280

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 281 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 340

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 341 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 400

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 401 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 438


>gi|312963542|ref|ZP_07778024.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
 gi|311282348|gb|EFQ60947.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens WH6]
          Length = 423

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 192/339 (56%), Gaps = 12/339 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L+  D++  A+TGSGKT AFG+ L + +   N R+    A   L + PTRELA QV +E+
Sbjct: 3   LKGLDLIAQAKTGSGKTAAFGIGLLNPI---NPRYFGCQA---LVMCPTRELADQVAKEI 56

Query: 95  EWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
             L  A+  + V    GGVS+  +   L++GAH++VGTPGR+  H+R   L +  L  ++
Sbjct: 57  RRLARAEDNIKVLTLCGGVSLGPQIASLEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLI 116

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEAD MLD+GF D IE I+  +P +R+ L+FSAT   +I  LA  + +   +V   +  
Sbjct: 117 LDEADRMLDMGFYDAIEDIISKTPPRRQTLLFSATYPVSIKQLASKFMRAPQQVKAEAF- 175

Query: 214 RQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
             HSD  I+ R   ++  +R +A+  +L +    + + FC T+  V      L       
Sbjct: 176 --HSDDQIEQRFYEISPEERMDAVTKVLAHFRPASCVAFCFTKQQVQETVDHLTAKGICA 233

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           V L G+L Q++R   L M  +    V +ATDVAARG+D+  L++VI+ EL+ + E  +HR
Sbjct: 234 VGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIHR 293

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            GRTGRAG  G+++ ++  +   RA+ + +     + W+
Sbjct: 294 VGRTGRAGETGIAISLVAPSEAHRAQAIEQLQKSPLNWD 332


>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 458

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 189/349 (54%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G  +   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 15  EALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 74

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 75  AKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    + L++SH++ +VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 135 DVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+  A+ +LA+ Y      +N  S + + + +       YRA  +   D+   +  IL
Sbjct: 195 SATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNM---DKPEMLARIL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  V +
Sbjct: 252 QADGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARGID+  +  V++ +   + +  LHR GRTGRAG KG+++ ++
Sbjct: 312 CTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLV 360


>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
 gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
          Length = 523

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----------- 56
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 55  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 113

Query: 57  ALASTLLAEND---------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
           A A    A  +         R  P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 114 AHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 173

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 174 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 227

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 228 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 285

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 286 IAQTVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 345

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 346 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 405

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 406 AGRSGIAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 445


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGGDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQTNRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 184/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G +    +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 16  EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPVDVEAGR 75

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 76  AKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    K LN++H+KA+VLDEADEMLDLGF  D+E I++  P +R+ ++F
Sbjct: 136 DVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKIINLLPVRRQTMLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +   + + + + +      V  +   D+   +  IL+  
Sbjct: 196 SATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDKPEMVARILQAE 255

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 256 GRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 315

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++
Sbjct: 316 VAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 361


>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 461

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/401 (33%), Positives = 215/401 (53%), Gaps = 35/401 (8%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA--- 57
           FE +   P ++ +AL+   Y   T VQ   +   +  KD+LVS+QTGSGKT AF L    
Sbjct: 3   FETLGLHPSIL-KALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPALH 61

Query: 58  -LASTLLAENDRFSP-----------------ASAPLALAIAPTRELAVQVGRELEWLYA 99
             A+  ++E  + +P                 A+ P  L + PTRELA+Q+    E   A
Sbjct: 62  RFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYSA 121

Query: 100 --KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
             K    VA+ +GG+   ++ + L     I+V TPGRL DH++   +    L+ +VLDEA
Sbjct: 122 CLKHFRTVAI-LGGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDEA 180

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF DDIE ++ ++P  R+ ++FSAT+   +  +A++   DA  ++I S   +H 
Sbjct: 181 DRMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRHE 240

Query: 218 DIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +I+     V  L  ++  + + L+      A+VF +T+         LA   F   AL G
Sbjct: 241 NIEQMIHYVDDLPHKNRLLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAALHG 300

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q  R+  L  +RDG+ ++ +ATDVAARGID+P +  V + +L   PE+ +HR GRTG
Sbjct: 301 DMPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGRTG 360

Query: 337 RAGRKGMSVFVIPQN---MQRRAERLFREA---NVSVVWEP 371
           RAGR G+++ ++  +     +R ER  ++    NV   +EP
Sbjct: 361 RAGRHGLAISLVSHSDSASMKRIERFTKQTIPVNVIEGFEP 401


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 219/387 (56%), Gaps = 21/387 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+V+  A++ +G+   + +Q   +   L   D+L  AQTG+GKT AF L L +      
Sbjct: 13  LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLA------ 66

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
            R  PA   P  L +APTRELA+QV    E  +AK   G+ V    GG     + + L+ 
Sbjct: 67  -RLDPALREPQMLILAPTRELAIQVATACEE-FAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++VGTPGR+ DH+    + +++LKA+VLDEADEML +GF DD++++L+ +P   ++ 
Sbjct: 125 GAQVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+ P I  +A  + K    V I +      + I  R   VA  ++ +A+  IL   
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+ +     + L     +  AL+G++ QQ+R   +Q ++D R  + IATD
Sbjct: 245 EHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V ARG+D+P +  V++ ++  +PE  +HR GRTGRAGR+G ++  +    Q++ R+ ER+
Sbjct: 305 VVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERI 364

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386
            R+   S+     PSV+ +   +A+RI
Sbjct: 365 TRQ---SIEKMALPSVDDL---NAKRI 385


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/332 (37%), Positives = 180/332 (54%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GYV  T +Q   +   L  +D+L  AQTG+GKT +F L L   L A   R +P +
Sbjct: 21  ALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHRL-AATPRPAPKN 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L +APTREL  Q+    E       V V    GGVS   + + L+ G  I+V  PG
Sbjct: 80  GARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALEEGVDIIVAAPG 139

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I     ++S L+ +VLDEAD+MLD+GF   IE I+ + P+ R  ++FSAT+  +I
Sbjct: 140 RLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLPEDRHTVLFSATMPKSI 199

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L ++  ++  +V IA  +     I    + +  SD+  A++  LR  G   A+VF   
Sbjct: 200 AALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTLQ 259

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +     L E      AL G  SQ +R  AL   R+G  +V +ATD+AARGID+  +
Sbjct: 260 KNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGDVQVLVATDIAARGIDVDTV 319

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L S PE+ +HR GRTGRAGR G ++
Sbjct: 320 THVINHDLPSLPESYVHRIGRTGRAGRSGFAI 351


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 187/351 (53%), Gaps = 7/351 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+  +GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L   +  +F
Sbjct: 12  ILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSKGQKLKF 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A   L + PTRELA QV   +E       +   V  GGV  + + + L+ G  ++V
Sbjct: 72  NQVRA---LILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRKGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL+  PK R+ L+FSAT 
Sbjct: 129 ATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++A+ N     ++    +V  + +   +  +++ +  K  +V
Sbjct: 189 SDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKDNDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D
Sbjct: 249 FSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++    A  LF
Sbjct: 309 IEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSED---EASELF 356


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPAVTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT   +I TLA+   K+ V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 459

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 200/385 (51%), Gaps = 11/385 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+ + Y   T +Q   + P ++ +D+   AQTG+GKT  F L     LL    R +
Sbjct: 13  INRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPSIHHLLTYPHRPT 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P    + L +APTRELA Q+ +        T + V+   GGV ++++ RDL  G  I+V 
Sbjct: 73  PRGCRM-LVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIRDLSQGVDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  + L +  ++  VLDEAD+M+D+GF   +  +    P +R+ L FSAT+ 
Sbjct: 132 TPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSRRQNLFFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +  D V V++A +      +   A  V   ++   + ++++      A++F
Sbjct: 192 KEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQKEKQALLHHVIKTSDIDRALIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  + L     +  A+ G  SQ +R+ ALQ  R G+ R+ +ATD+AARGID+
Sbjct: 252 TRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLLVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSV 367
             +  VI+ E+ + PE  +HR GRT RAG +G+++ F+ P      R  ER+ R      
Sbjct: 312 SGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRDIERVTR-----T 366

Query: 368 VWEPAPSVEAIRE--RDAQRILQDP 390
             EP P  E   E  R+  + +Q P
Sbjct: 367 RAEPMPLPEGFNELVRNLPKPVQPP 391


>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 433

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/345 (36%), Positives = 186/345 (53%), Gaps = 3/345 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPELI-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+D  S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLF-ESDS-STTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF +D++ ++ S   +R
Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +       L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG +G ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAI 344


>gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 381

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/340 (37%), Positives = 187/340 (55%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+ E GY   T +Q+  +   L  +D+L  AQTG+GKT AF + L  TL  E
Sbjct: 7   NIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLLQTLYKE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       L + PTRELA+Q+G  LE     TG+  AV  GGVS   +   L++G 
Sbjct: 67  RTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVNKLRSGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  K +N+S LK ++LDEAD MLD+GF  D++ I+      R+ L+F
Sbjct: 127 DIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDTRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   IT +     K+ V+V +   +     I+     V   D+ + ++ +L+    +
Sbjct: 187 SATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQNVYFVEQKDKKSLLIKLLKNRAIE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    +  K LA+      A+ G+ SQ  R  AL   +  R RV +ATD+AA
Sbjct: 247 SVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  +I+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 307 RGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTAL 346


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 193/348 (55%), Gaps = 5/348 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           NI + I +AL  + Y   T +Q+  +   L  +D+L  AQTG+GKT AF + +   L   
Sbjct: 7   NISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPIIQQLAKS 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+++R     A   L + PTRELA+Q+    +     T +   V  GGVS + + ++L+ 
Sbjct: 67  ADDNRRRDIKA---LILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVKELER 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D I    + + H+   VLDEAD MLD+GF  DI+ ++   PK+R+ L
Sbjct: 124 GVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKRRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  L+K+      RV +A  +     I+ R   V    + + +V++L+  G
Sbjct: 184 LFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVLKNDG 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++A+VF  T+    R  + L     +  A+ G  SQ  R  AL   + G+ RV +ATD+
Sbjct: 244 NRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIVATDI 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARGID+ +L++VI+ +L    E  +HR GRTGRAG  G+++    Q+
Sbjct: 304 AARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQD 351


>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 793

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 205/359 (57%), Gaps = 25/359 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +P    KD++  A+TGSGKT++F L +   LL +N R     A
Sbjct: 210 LHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKTLSFALPVIERLL-KNPRSEKGRA 268

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  L +APTRELA QV R  E +  +   + ++C+ GGV    +   ++ G  +VVGTPG
Sbjct: 269 PAVLVMAPTRELASQVHRVFESVAPQ---LASICVYGGVEYGPQELAMRKGLDVVVGTPG 325

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATIS 190
           RL DH     L++  +  ++LDEAD ML++GF+++++ I+   P    K R+L+FSAT+ 
Sbjct: 326 RLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIMAGLPIGDAKPRILLFSATMP 385

Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILR-YHGAKN 246
             +  L K YQ+ D V V++ S   Q +   I + A+     +R NAI +++R Y G+  
Sbjct: 386 TWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQERANAIGDVVRVYSGSHG 445

Query: 247 -AIVFCSTRASVSRFT---KVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +VF ST+   +      ++  E H+     L G+++Q++R   L   R G+ R  +AT
Sbjct: 446 RCMVFASTKEEANDLALNGRIAGETHV-----LHGDIAQKQREITLAGFRSGKFRCLVAT 500

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAE 357
           DVAARG+D+P++ELVI  E   + E  +HR+GRTGRAG+ G  + F  PQ  ++ RR E
Sbjct: 501 DVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCILFYKPQQESLVRRIE 559


>gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
          Length = 374

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + +   L  +
Sbjct: 7   NITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +   L+ G 
Sbjct: 67  KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL     +
Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQLVYFVEKKEKSQLLISILSKAEDQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350


>gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 506

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/370 (34%), Positives = 194/370 (52%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L     +     
Sbjct: 15  AVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSESAPQRQGKP 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IVV TPG
Sbjct: 75  AVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIEQLRRGVEIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT S  I
Sbjct: 135 RLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   + +A  N     +  R   V    +   + +++R H     +VF  T
Sbjct: 195 RALADRLLNNPASIEVARRNTTAETVAQRVYPVDRERKRELLAHLVREHDWHQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +     +A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+  L
Sbjct: 255 KHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLVATDIAARGIDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR---EANVSV 367
             V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL +   E  V  
Sbjct: 315 PHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRDIERLIKRKLEQTVLT 374

Query: 368 VWEPAPSVEA 377
            +E  P++ A
Sbjct: 375 GFEVDPTIAA 384


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+P  + +++SE G+   + +Q A L   L   D++  AQTG+GKT AF LA+ S  L  
Sbjct: 67  NLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSDFLDY 126

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E +R    +    L IAPTRELA+Q+  E E +     + V   +GG+S  +++R L+
Sbjct: 127 PVEEER--ARNMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKRALE 184

Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  R K   ++ ++ +VLDEAD ML +GF  D++ I+  +P K  
Sbjct: 185 TERVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPHKER 244

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I  LA+ +      V++  +   + +ID     V    +   + +++
Sbjct: 245 RQTMLFSATFPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEADQKWPVLKSLI 304

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G +  I+F + R       ++L E       LSGE+SQ +R   L+  +DGR +V +
Sbjct: 305 EDDGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQVLV 364

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           ATDVA RGI + ++ELV++  L  +PE+ +HR GRTGR G  G SV        F+IP+
Sbjct: 365 ATDVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDAFLIPE 423


>gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 414

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+SE GY   TS+Q   +   L   D+L SAQTG+GKT +F L +     ++  + S
Sbjct: 12  LNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKA-SQQTQTS 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P    + L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+V 
Sbjct: 71  PNRVKV-LILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + + +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT +
Sbjct: 130 TPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSATFT 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  LA+N    AV ++IA  N     I      V  + +   + ++L  +     +VF
Sbjct: 190 PEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K LAE     VA+ G  SQ +R  AL   + G+ +  IATD+AARGID+
Sbjct: 250 SRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTLIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L   PE+ +HR GRTGRAG  G++V ++
Sbjct: 310 EKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLV 347


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + +   L  +
Sbjct: 7   NITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +   L+ G 
Sbjct: 67  KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL     +
Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSKAEDQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350


>gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1]
 gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 439

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 194/338 (57%), Gaps = 3/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + LL+ +    
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEG 79

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ L  G  I++
Sbjct: 80  RQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILI 139

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSA 187
           GT GR+ D++R   +N++ ++AVVLDEAD M DLGF  DI F+    P   +R  ++FSA
Sbjct: 140 GTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSA 199

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA ++  D V+V IA E +   +I       +  D+   ++ ++     + A
Sbjct: 200 TLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKA 259

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATDVAARG
Sbjct: 260 IVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARG 319

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG KG+SV
Sbjct: 320 LHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357


>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 429

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 2/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L  TLL + 
Sbjct: 8   LPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL-TLLEKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R  P     AL + PTRELA QV   +        +  AV  GGV ++ + + L+ G  
Sbjct: 67  NRPKPNQV-RALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQILRQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      ++   L+ ++LDEAD MLD+GF  DI+ IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    + V ++++  N    ++      V  + +   +  +++ +  + 
Sbjct: 186 ATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEVDKTKKSIVLSTLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   ++G+ R  +ATD+AAR
Sbjct: 246 VLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++
Sbjct: 306 GIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLV 347


>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
           albilineans]
          Length = 458

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/364 (36%), Positives = 197/364 (54%), Gaps = 15/364 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY  +T VQ   L P L   DV+V A TGSGKT AFGL L   L     R        AL
Sbjct: 21  GYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGLLHKLDPALVRAQ------AL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVHRERRDLQ-NGAHIVVGTPGR 134
            + PTRELA QVG+++  L   TG+    + V  GG+ +  +   L+ +   +VVGTPGR
Sbjct: 75  VLCPTRELADQVGKQVRKL--ATGIANMKLVVLTGGMPLAPQLASLEAHDPQVVVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + +  R + L++  ++ +VLDEAD MLD+GF + I  I     K R+ L+FSAT    I 
Sbjct: 133 IQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRCDKHRQSLLFSATFPETIR 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA+   KD   + +A       +ID +   V  S R  A+  +L     ++++VFC+TR
Sbjct: 193 ALARELLKDPTEITVAGAE-SAPEIDQQFFEVDPSYRQKAVAGLLLRFAPESSVVFCNTR 251

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L +  F  +AL G++ Q++R   L    +    V +A+DVAARG+D+ DL 
Sbjct: 252 KEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLA 311

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373
            V++ EL ++ E   HR GRT RAG+ G+++  V P+ +Q RA+ L  E ++ + W  AP
Sbjct: 312 AVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQ-RAQALETEQSLPLRWSRAP 370

Query: 374 SVEA 377
              A
Sbjct: 371 LATA 374


>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 423

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 3/341 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+ +GY   T +Q   +   +   DV+ +AQTG+GKT  F L +   +L  N+
Sbjct: 10  PEIL-NALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPILE-MLKGNE 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R + A+    L + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  I
Sbjct: 68  R-AKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMMKLRKGVDI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P KR+ LMFSA
Sbjct: 127 LVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAKRQNLMFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LAK+   + V +++A+ N     I+        + +   ++ ILR       
Sbjct: 187 TFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYAAEKTHKPRMLMQILRNLNLPQV 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+   +R  K L +  F   A+ G  SQ  R+ AL   + G  +V +ATD+AARG
Sbjct: 247 IVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVLVATDIAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+  L  VI+ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 307 LDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLV 347


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 138/373 (36%), Positives = 202/373 (54%), Gaps = 15/373 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   + +Q A +   +   D+L  AQTG+GKT AF L L S L A N      
Sbjct: 21  KALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTAAFALPLLSRLEAGNRNTQ-- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                L +APTRELA+QV    +  YAK      V    GG S   + R L+ GA +VVG
Sbjct: 79  ----VLVLAPTRELALQVAEACQR-YAKHMPDFHVLPIYGGSSYETQTRALRRGAQVVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D IR K L++S LKA+VLDEADEML +GF DD+++I++  P  R++ +FSAT+ 
Sbjct: 134 TPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDWIMEQCPSTRQVALFSATMP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A+ + K    + I S+      I  R   V    + +A+  +L     +  +VF
Sbjct: 194 DQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHKLDAMTRLLEVEPYEAVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +       LA       AL G++ Q+ R   +  +R G+  + IATDV ARG+D+
Sbjct: 254 VRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLRQGQLDILIATDVVARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
             +  V++ ++  + E+ +HR GRTGRAGRKG ++ FV P+  +RR  R    A    + 
Sbjct: 314 ERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR--ERRMLRAIEHATRQAI- 370

Query: 370 EP--APSVEAIRE 380
           EP   PS E I +
Sbjct: 371 EPMKMPSTEDINQ 383


>gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan
           troglodytes]
          Length = 455

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens]
          Length = 450

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 26  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 86  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 200 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 260 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 320 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 364


>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
 gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
          Length = 474

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     +  I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395


>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
 gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
 gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
 gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
 gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
 gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
 gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 374

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + +   L  +
Sbjct: 7   NITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQHLQLD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +   L+ G 
Sbjct: 67  KEA-ARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLRKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL     +
Sbjct: 186 SATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSKAEDQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQ 350


>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
          Length = 513

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 14/345 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY N TS+Q   +   L  KD++  A+TGSGKT AF + +   L      +   
Sbjct: 95  EACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPILQAL------WDNP 148

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   A  +APTRELA Q+  + E L    GV  AV +GG+ +  +   L    HI+V TP
Sbjct: 149 TGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQSVALGKKPHILVATP 208

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P+ RR  +FSAT++ 
Sbjct: 209 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIPQTRRTYLFSATMTS 268

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +      VR+++ S+    S +  + + +    +D  +V ++     +  I+FC
Sbjct: 269 KVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPFKHKDTYLVYLMNEFAGQTTIIFC 328

Query: 252 STRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            T    SR   +L  HL F  V L+G++SQ  R  AL   + G   + +ATDVAARG+D+
Sbjct: 329 RTVQETSRLA-ILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNILVATDVAARGLDM 387

Query: 311 ---PD--LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
              PD  L  V++ +L+ + +  +HR GRT RAGR G S+ ++ Q
Sbjct: 388 HVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQ 432


>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 515

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +      S 
Sbjct: 15  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNTMPAVTTGSG 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G  IVV T
Sbjct: 75  KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I TLA N       + +A  N     +  +   V    +   + ++++ H     +VF 
Sbjct: 195 EIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+ 
Sbjct: 255 RTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 315 QLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLV 351


>gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 443

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 19  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 79  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 132

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 133 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 193 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 253 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 313 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 357


>gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
 gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
          Length = 438

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 196/342 (57%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+++   +++ G+ + T +QE  L   L  KDV   AQTG+GKT AF ++L + LL +
Sbjct: 7   NLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLFTRLL-K 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N        P AL +APTREL VQ+ ++ + L A  G V+    GGV   ++R  L+ GA
Sbjct: 66  NPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRSALKEGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            +VVGTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   P   KR+ L
Sbjct: 126 DVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPFDKRQNL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT++  +  LA  +     +V +  E      ++     V   ++   ++ +LR  G
Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKKG 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+       + L  + F    +SG++ Q++R   L+  ++G+  + IATDV
Sbjct: 246 MERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKLPIMIATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 191/342 (55%), Gaps = 4/342 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +  ++  +    +  
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSI--DKKEKAIQ 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
           +   A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L Q+   I+VGT
Sbjct: 72  AIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIRSLKQHAPSILVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL  +   ++ L+FSAT+  
Sbjct: 132 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCKQTLLFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + + KD   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 192 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 252 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 312 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353


>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
 gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
          Length = 434

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 210/382 (54%), Gaps = 17/382 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A ++ G+   T +Q   L   L+ +D++  AQTGSGKT AF L +   L  +   F   
Sbjct: 21  DACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQALFQQCHPF--- 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  ++PTRELA+Q+  + E L ++ GV     +GGVS+  +   L    HIVV TP
Sbjct: 78  ---FACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATP 134

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ ++K +VLDEAD++L   F  +++ IL   P++R+  +FSAT++ 
Sbjct: 135 GRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSATMTN 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++  +V ++S+      +    V V    +D   V +L       A+VF 
Sbjct: 195 KVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGSTAMVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S  R   +L    F  + +SG++SQ +RS AL   + G   + I TDVA+RG+D+P
Sbjct: 255 RTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRGLDIP 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            +++VI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q   ++ +R E L     +++ 
Sbjct: 315 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLI---GMTLP 371

Query: 369 WEPAPSVEAI----RERDAQRI 386
             PA + E +    R  +AQR+
Sbjct: 372 EFPAKADEVLLLEERVSEAQRL 393


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 188/341 (55%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY N T VQE  +   L  +D++ +A TG+GKT AF L + STL     R     
Sbjct: 16  AVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTLPRVKGR---NR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L ++PTRELA Q+ R    +  +T        GG     + ++L+ G  +++ TPG
Sbjct: 73  APRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQIKELRGGTDVLIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++   +N+S ++ +VLDEAD MLD+GF  D+  I+D++P+ R+ L+FSATI  +I
Sbjct: 133 RLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPECRQTLLFSATIDQSI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +   D   V IA        ++   + +   ++   +  +LR  G++  IVF  T
Sbjct: 193 QKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKNFNKPELLEAVLREKGSERIIVFART 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L +  F+  ++  + SQ  R  AL+  R G+  + +ATDV ARGID+PD+
Sbjct: 253 KNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSILVATDVLARGIDVPDV 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + VI+ +L   PE+ +HR GRTGRAG KG ++  + +   R
Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSR 353


>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 465

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +   L    ++     
Sbjct: 16  AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLATSAEKTKGRK 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 76  PVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PKKR+ L+FSAT S  I
Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T LA +   + + + +A +N     +D    LV    +   + +++        ++F  T
Sbjct: 196 TGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255

Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           +   ++    LAEHL     +  A+ G  SQ  R+ AL   +DG+ +  +ATD+AARG+D
Sbjct: 256 KHGANK----LAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358
           +  L  V++ EL    E+ +HR GRTGRA   G ++ +           I + ++R   R
Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371

Query: 359 LFREANVSVVWEPAPSVEA 377
           L  E      ++P PS++A
Sbjct: 372 LALEG-----YDPDPSIKA 385


>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
          Length = 465

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 24/379 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +   L    ++     
Sbjct: 16  AIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEKLATSAEKTKGRK 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 76  PVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PKKR+ L+FSAT S  I
Sbjct: 136 RLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSKEI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T LA +   + + + +A +N     +D    LV    +   + +++        ++F  T
Sbjct: 196 TGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHLIGLENWPQVLIFTRT 255

Query: 254 RASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           +   ++    LAEHL     +  A+ G  SQ  R+ AL   +DG+ +  +ATD+AARG+D
Sbjct: 256 KHGANK----LAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKALVATDIAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----------IPQNMQRRAER 358
           +  L  V++ EL    E+ +HR GRTGRA   G ++ +           I + ++R   R
Sbjct: 312 IDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLADIERLLKREIPR 371

Query: 359 LFREANVSVVWEPAPSVEA 377
           L  E      ++P PS++A
Sbjct: 372 LALEG-----YDPDPSIKA 385


>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo
           abelii]
          Length = 455

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
 gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
 gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
          Length = 457

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 33  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 93  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 146

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 147 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 207 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 267 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 327 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 371


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPAVTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAG 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT   +I TLA+   K+ V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/358 (36%), Positives = 203/358 (56%), Gaps = 10/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + +A+++ G+V  T++Q+  +   L  +DV+  AQTG+GKT AFGL L   + + 
Sbjct: 167 GLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 226

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           +      S   AL +APTRELA+Q    +  + A++ G+ V    GG     +   L+ G
Sbjct: 227 D------SVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIGALKGG 280

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I  S P  RR  +
Sbjct: 281 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTDRRTAL 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L    A
Sbjct: 341 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 400

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +ATDVA
Sbjct: 401 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 460

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V F+ P+     R+ ERL
Sbjct: 461 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 518


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 181/335 (54%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A S++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L  EN R     
Sbjct: 15  ATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL-GENPRT--GK 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   +           AV  GGV ++ +   L+ G  ++V TPG
Sbjct: 72  GPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLRKGLDVLVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S  I
Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQNLLFSATFSNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    + V+V +A+ N    +I      V  S +   +  ++R +     +VF  T
Sbjct: 192 RTLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKLVRDNSWDQVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 252 KHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAARGLDIKQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346


>gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 540

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 13/377 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L     R +  +
Sbjct: 15  AVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSETAARANGGN 74

Query: 74  APL-------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           AP        AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 75  APRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGINPQIEALRRGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  +L+  P KR+ L+FS
Sbjct: 135 IVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKVLNVLPPKRQNLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   + +A  N     +  R   V    +   + +++R H    
Sbjct: 195 ATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKRELLAHLVRQHDWHQ 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 255 VLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKAGTLRLLVATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL +  
Sbjct: 315 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRDIERLIKRQ 374

Query: 364 NVSVV---WEPAPSVEA 377
              V+   +E  PS++A
Sbjct: 375 IEQVLLPGFEVDPSIKA 391


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/344 (36%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 44  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 103

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV + +    +  G  V    GGV    +   LQ G  
Sbjct: 104 EELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYEPQIDALQAGVD 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH+  VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 164 VVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGRTPTPRQTMLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++     V V     + Q +  D +  +      D+   I  IL+ + A
Sbjct: 224 ATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDA 283

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G   + +ATDVA
Sbjct: 284 EKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHGDVTILVATDVA 343

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 344 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLV 387


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 60  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 119

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 120 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYESQIDALKAGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 180 VVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 240 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 300 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGEATILVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 360 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 403


>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 431

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 185/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+E GY   T +Q   +   L  +D+L  AQTG+GKT AF L + + +   N R +
Sbjct: 13  IQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILNHIFT-NRRPA 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL +APTRELA Q+G              AV  GGV   R+    + G  ++V 
Sbjct: 72  PPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQIETTRRGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D I  K +++S L+ +VLDEAD MLD+GF  DI+ I+   PK+R+ L+FSAT+ 
Sbjct: 132 APGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPKQRQTLLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P+I+ LA +  K+   V +  E+     I+   + V    + +A + +L       A+VF
Sbjct: 192 PSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALMLLESPSVARAVVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   ++  + L ++  +  A+ G  SQ  R  A+   R G  +  +ATD+AARGID+
Sbjct: 252 TLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKALVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  V + +L + PE+ +HR GRT RAGR+G +V
Sbjct: 312 DEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAV 346


>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
 gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
          Length = 396

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 194/352 (55%), Gaps = 9/352 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KD++  AQTGSGKT AF + +  +L      +        L +AP 
Sbjct: 7   TPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPY------FGLVLAPA 60

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142
           RELA Q+    + L +  GV     +GG+ +  + RDL    HI++ TPGR+ DH+   K
Sbjct: 61  RELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTK 120

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  LK  V+DEAD++LDL F   ++ IL   P KR   +FSAT++  I  L +    
Sbjct: 121 GFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKLQRASLH 180

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + VRV ++S+ +   ++    +LV+   ++  ++++L     K+ I+F  TRA   R T 
Sbjct: 181 NPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQR-TS 239

Query: 263 VLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           +L   L F  V L G+L+Q +R  +L   + G A + IATDVAARG+D+P +++VI+ ++
Sbjct: 240 ILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDI 299

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            ++ +  +HR GRT RAGR G S+ ++ Q       R+ +     +  +P+P
Sbjct: 300 PTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSP 351


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEI 359


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 192/350 (54%), Gaps = 11/350 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P V+  AL+E G     ++QE  L   L   D++  A+TG+GKT+ FG+ +   ++
Sbjct: 113 FDVHPDVVA-ALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQRVV 171

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +       P AL + PTREL VQV R+L    +K G+ V    GG +   +   LQ 
Sbjct: 172 PPAEGGD--GVPQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQA 229

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D  +   L +  +K +VLDEADEMLDLGF  DIE IL   P KR+ +
Sbjct: 230 GVEIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTM 289

Query: 184 MFSATISPAITTLAKNY--QKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNI 238
           +FSAT+   I TL++++  Q   +R +   E     Q +   YRA  +   D+   +  +
Sbjct: 290 LFSATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQFIYRAHNL---DKPELLSRV 346

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V 
Sbjct: 347 LQARDRSLVMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVL 406

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+  +  V++ +   + +  LHR GRTGRAG +G++V ++
Sbjct: 407 VATDVAARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLV 456


>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Apis mellifera]
          Length = 452

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 202/358 (56%), Gaps = 10/358 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ +A  +  + + T +Q   +   L  KD++  A+TGSGKT AF L +   LL   
Sbjct: 25  IVDVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPILQALLENP 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 85  QRY------FALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPH 138

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG ++  LK +V+DEAD +L++ F  +++ IL   P++R+ L+F
Sbjct: 139 ILIATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKTLLF 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 199 SATMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGN 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC+T  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 259 SFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVAS 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q    + +R E+L 
Sbjct: 319 RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376


>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
 gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii]
          Length = 477

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 211/373 (56%), Gaps = 16/373 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ EA+ +  +   T +Q   +   L  KD++  AQTGSGKT AF + +   L    
Sbjct: 73  IPELL-EAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQAL---- 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +   +A   L +APTRELA Q+    + L +  G+     +GG+ +  + RDL    H
Sbjct: 128 --WEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPH 185

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGR+ DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P +R   +F
Sbjct: 186 ILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIPTQRTTYLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + VRV ++++ +   ++    +LV+   ++  ++++L     K
Sbjct: 246 SATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIHLLNEFLGK 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + I+F  T A   R T +LA  L F  V L G+L+Q +R  +L   + G+A + IATDVA
Sbjct: 306 SIIIFTRTCAHSQR-TALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANILIATDVA 364

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ +I Q    M  R E +  
Sbjct: 365 ARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLRIESVLG 424

Query: 362 EANVSVVWEPAPS 374
           +    +  +P+PS
Sbjct: 425 K---KLPKDPSPS 434


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 139/410 (33%), Positives = 215/410 (52%), Gaps = 13/410 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T +Q+  +   L   D+L  +QTG+GKT A+ L +   +  +N          AL
Sbjct: 22  GFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPILEQVDVKNPNVQ------AL 75

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV   L+    +  + +    GG S+ R+ R L+ G  IVVGTPGR+ D 
Sbjct: 76  ILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLERGVQIVVGTPGRVIDL 135

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  K L+   L+  VLDEADEML +GF DD++ IL  +P  R    FSAT+   I  L  
Sbjct: 136 LDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTACFSATMPREIRELVN 195

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + K  V V +       S I+     V     +  A+  IL     ++AI+F  T+ + 
Sbjct: 196 QFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELEAPESAIIFVRTKQTA 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +  T  L E    V    G LSQ +R   +   R+G+ ++ +ATD+AARG+D+ +L  VI
Sbjct: 256 AELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIAARGLDVENLSHVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L  N E  +HR GRTGRAG+ G ++ +   I + M ++ ER  R+  + +   P+ S
Sbjct: 316 NYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERKLRQ-QLEICQIPSRS 374

Query: 375 -VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VE+ R    QR +Q+ L  + +      +V  L A++DP+ IAA  L++
Sbjct: 375 QVESKRLEKLQRQIQESLAGERM-ASFLPIVRELSAEYDPQAIAAAALQM 423


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 182/335 (54%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A +++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L AEN R     
Sbjct: 15  ATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL-AENPRT--GK 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L +APTRELA QV   +           AV  GGV ++ +   L+ G  ++V TPG
Sbjct: 72  GPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLRKGLDVLVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S  I
Sbjct: 132 RLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATFSNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    + V+V +A+ N     I      V  S +   +  ++R +G +  +VF  T
Sbjct: 192 RTLAEGLLDNPVQVEVAARNTAAESIKQSVYPVDQSQKTALLSKLVRDNGWEQVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R T+ L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 252 KHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLVATDIAARGLDIKQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 515

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 185/335 (55%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L A+  +  P  
Sbjct: 26  AIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVLHLLHAKPVKVKPGQ 85

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    I+V TPG
Sbjct: 86  -PRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIERLKKPLDILVATPG 144

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PKKR+ L+FSAT S  I
Sbjct: 145 RLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKRQNLLFSATFSDEI 204

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    LV+   + + + +++R+H  K  ++F  T
Sbjct: 205 KELADGLLHNPGFVEVARRNTASELVEQAVHLVSQGHKRDLVAHLIRHHDWKQVLIFTRT 264

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L++      A+ G  SQ  R+ AL   ++G   V +ATD+AARG+D+  L
Sbjct: 265 KHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPVLVATDIAARGLDIDQL 324

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V ++
Sbjct: 325 PQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLV 359


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 193/348 (55%), Gaps = 7/348 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +++ + GY   T +QE  + P L  KD++  AQTG+GKT +F L +   + A   
Sbjct: 10  PELL-KSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDIMAAGRR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + + L  G  +
Sbjct: 69  R---ALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQIKALNEGVDV 125

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ TPGRL D   RGK L ++  + +V+DEAD MLD+GF  DIEFI    P++R+ ++FS
Sbjct: 126 LIATPGRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  L+K +  +  R+        + DI    V V    +   +  +L     + 
Sbjct: 185 ATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQKRETLEWLLENDHVET 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF + + +V    K L    F+   + G++ Q +R+  LQ  +DG   + +A+DVAAR
Sbjct: 245 AIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINILVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           G+D+  +  V + +   +P++ +HR GRTGRAG KG +  FV P++ +
Sbjct: 305 GLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAE 352


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GYV  T +Q+  +   L  KD+L SAQTG+GKT  F L +   LL+E+   +   
Sbjct: 15  AVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQ-LLSESPAQAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++SH++ ++LDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAKRQNLLFSATFSDD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA    +D V + +A  N     ID     V    +   +  ++     +  +VF  
Sbjct: 194 IKSLANKLLRDPVSIEVARRNSASEQIDQAVHFVDKKRKGELLSYMIGNQNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L++      A+ G  SQ  R+ AL   + GR R  +ATD+AARG+D+  
Sbjct: 254 TKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIRALVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL +  E+ +HR GRTGRA   G ++ ++      +    ERL +     +  
Sbjct: 314 LPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLHDIERLLKREIPRIAI 373

Query: 369 --WEPAPSVEA 377
             ++P PS++A
Sbjct: 374 SGYDPDPSIKA 384


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 185/355 (52%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   +  + 
Sbjct: 10  IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA QV   L      T + +    GG S+  ++  L+ GA 
Sbjct: 70  RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  +++++FS
Sbjct: 126 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       V V ++  N     +      V    +   +  ++     + 
Sbjct: 186 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 246 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V +    M R  E L R
Sbjct: 306 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLR 356


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 200/366 (54%), Gaps = 4/366 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    + +QE  +   +  +D+L  AQTG+GKT AFGL + + LL    +  P +   AL
Sbjct: 86  GIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTRLLNIGRKPEPRTC-RAL 144

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   ++     T +     +GG S++ + + L+ G  +++ TPGRL D 
Sbjct: 145 ILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLERGVDVLIATPGRLIDL 204

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    +++S  + +VLDEAD+MLD+GF   +  I    P++R+ L+FSAT+   +  LA 
Sbjct: 205 IERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQTLLFSATMPKLMEELAD 264

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +Y  D +RV +    +    ID     V   D+   +   L  H  + AIVF  T+    
Sbjct: 265 SYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLSKHVDELAIVFGRTKHGSE 324

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +  K+L +  F+V A+ G  SQ +R  AL   R G  +V +ATDVAARG+D+P +  V +
Sbjct: 325 KLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVATDVAARGLDIPQVAHVYN 384

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREANVSVVWEPAPSVE 376
            +L + PEN +HR GRT RAGR G ++ F  P  + + RA     +A ++VV    P   
Sbjct: 385 YDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAIEKAMKAKIAVVGGEEPFEA 444

Query: 377 A-IRER 381
           A IRER
Sbjct: 445 AKIRER 450


>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 452

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 182/336 (54%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E+GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   L A     +P 
Sbjct: 14  DAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILERLAAGTR--APG 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+G  +E       +  AV  GGV ++ +   L+ G  I+V TP
Sbjct: 72  KQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLRGGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    K +N   L  +VLDEAD MLD+GF  DI  IL + P KR+ L+FSAT S  
Sbjct: 132 GRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQNLLFSATFSQE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    D V +++   N     +      V  + +   + +++  H  +  +VF  
Sbjct: 192 IRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKARKPALLTHLIHEHQWQQVLVFMR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R ++ L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 252 TKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVLVATDIAARGLDINQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 312 LPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLV 347


>gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 199/369 (53%), Gaps = 5/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ + Y + T +Q   +   L+ KD+   AQTG+GKT AF L  +    A N + +P  
Sbjct: 15  ALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALP-SLDHFARNPKPTPLQ 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA Q+ +          + V V  GGV ++R+ R L  G  IVV TPG
Sbjct: 74  GCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRTLGRGVDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I  +   I   +  VLDEAD+M+D+GF   ++ I    PK+R+ L FSAT+   I
Sbjct: 134 RLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFSATMPGEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFCS 252
             LA  +  D V+V++A ++     +  +A  V   ++  A++N+ +R      A++F  
Sbjct: 194 EALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEK-QALLNLTIRNEDIDRALIFTR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  + L     Q VA+ G  SQ +R+ ALQ  R G  ++ +ATD+AARGID+  
Sbjct: 253 TKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAARGIDVSG 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  VI+ EL + PE  +HR GRT RAG +G+++  +  + +   + + R   V +   P 
Sbjct: 313 VSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAIERTTKVKLDVVPL 372

Query: 373 PS--VEAIR 379
           P   VEA+R
Sbjct: 373 PENFVEAVR 381


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 181/337 (53%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  ALSE GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L + +DR
Sbjct: 11  QPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLSDR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L ++PTRELA Q+                V  GGV++ R+ R L  G  I+
Sbjct: 70  RAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQERALAPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P+KR+ L FSAT
Sbjct: 130 VATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPEKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA  Y  D V+V +         ++   + V    +   + +ILR    +  +
Sbjct: 190 MPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVHTGAKQALLGHILRDPAIERVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G  SQ +R  AL   +DG  RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ +L + PE+ +HR GRT RAG  G+++
Sbjct: 310 DVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAI 346


>gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
          Length = 564

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 GELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++  +  V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L    F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFRHGEATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLV 407


>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 539

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G ++   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 36  EALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 95

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 96  AKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 155

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    + L++SH++A+VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 156 DVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQQLPAKRQTMLF 215

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNIL 239
           SAT+  A+  LA+ Y      ++  S + + + +       YRA  +   D+   +  IL
Sbjct: 216 SATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSM---DKPEMVSRIL 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A++FC T+ + +     LA+  F   A+ G+L Q  R  AL+  R+G+  V +
Sbjct: 273 QAEGRGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG  G +V ++
Sbjct: 333 CTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLV 381


>gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 520

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 12/342 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L       SPA 
Sbjct: 15  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL-----NSSPAV 69

Query: 74  AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           A         AL + PTRELA QV   +        +   V  GGV ++ +   L++G  
Sbjct: 70  ANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 130 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA N       + +A  N     +  +   V    +   + ++++ H    
Sbjct: 190 ATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTHLIKQHNWFQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 250 VLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 GIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351


>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
 gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
          Length = 474

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     +  I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395


>gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter
           vinelandii DJ]
          Length = 558

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 168/532 (31%), Positives = 271/532 (50%), Gaps = 28/532 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A++  GY   + +Q   +   L   D++  AQTG+GKT AF L + S       
Sbjct: 15  PAVLA-AITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLS------- 66

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
           R  PA   P  L +APTRELA+QV    E   ++  GV V    GG  +  + + L+ GA
Sbjct: 67  RIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRLCDH+R     +S +K +VLDEADEML LGF +D+E I  + P+ R+ ++F
Sbjct: 127 QILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ +  +   V IA++ +  + ID   ++V    +  A++ +L      
Sbjct: 187 SATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLA--KHDPEKIAAGF 420
            V     P  + +   R R     LQ PL  +S +    +++D L A     P  +AA  
Sbjct: 367 KVAEVHLPGAQQVLDARIRKLTAALQ-PLLAES-ESSHGELLDRLTAGLGCSPRALAAAL 424

Query: 421 LRIHRAG--LCAPE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDN------FKGSSWF 469
           LR    G  L   E   E  PV  VS     R+ S      G  R+        +G    
Sbjct: 425 LRKATNGQALTLSEVEREQPPVPSVSAPRERRERSDRSMERGVHRERRAPMPLPEGRVRC 484

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++ L
Sbjct: 485 RAALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERL 536


>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Callithrix jacchus]
          Length = 455

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 isoform 1 [Canis familiaris]
          Length = 456

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
 gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
          Length = 474

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     +  I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395


>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
 gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
          Length = 518

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 202/358 (56%), Gaps = 10/358 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 64  LSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 124 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH 177

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 178 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 238 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGN 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 298 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E+L 
Sbjct: 358 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQLL 415


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 199/354 (56%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   +L
Sbjct: 6   FSFAPEIL-RAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQKML 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N   +  S   AL + PTRELA Q+   +        + V    GGV +  +   L+ 
Sbjct: 65  -DNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDN--AIVNILR 240
           +FSAT S A+  LA       V+ N+ + ++Q++  I    V+  +  R     +  ++ 
Sbjct: 184 LFSATFSTAVKQLANEMM---VKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEER 354


>gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
 gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
          Length = 543

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 12/342 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L       SPA 
Sbjct: 37  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL-----NSSPAV 91

Query: 74  AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           A         AL + PTRELA QV   +        +   V  GGV ++ +   L++G  
Sbjct: 92  ANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 152 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA N       + +A  N     +  +   V    +   + ++++ H    
Sbjct: 212 ATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQ 271

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 272 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 331

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 332 GIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLV 373


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 213/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT   +I TLA+   K+ V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
 gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
          Length = 474

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     +  I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVHILNEFPGQTTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQ 395


>gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
          Length = 513

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 185/334 (55%), Gaps = 9/334 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+ + + VQ   +   L+ KD++  AQTG+GKT AF + + + L + N      
Sbjct: 31  KGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPILNAL-SRNKEIE-- 87

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               AL I PTRELA+Q+  E+  L  + G +  +C+ GG S+ R+   L+    +++ T
Sbjct: 88  ----ALVITPTRELAMQISEEVLKL-GRFGRIKTICMYGGQSIKRQCDLLEKKPKVMIAT 142

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +     K VVLDE+DEMLD+GF DDIE I    P   + L+FSAT+  
Sbjct: 143 PGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNTHQTLLFSATMPE 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA         V I   +  + DI+ +  ++   +RD AIV +L       +I+F 
Sbjct: 203 PIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEGERDEAIVRLLETQNPTKSIIFT 262

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L    F+ +AL G++ Q +R  A++  ++    + +ATDVA+RG+D+ 
Sbjct: 263 RTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLVATDVASRGLDIS 322

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V +  +  NPE+ +HR GRTGRAG+KG+++
Sbjct: 323 DVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAI 356


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 195/378 (51%), Gaps = 12/378 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q+  + P L   D+L  AQTG+GKT AF L +   L        P  
Sbjct: 15  AIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQRLAQSG---GPRQ 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             L  L + PTRELA QV           G+  AV  GGV    +   L+ G  ++V TP
Sbjct: 72  GGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEALRRGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D           L  +VLDEAD MLD+GF  DI  +L   P++R+ L+FSAT+ P 
Sbjct: 132 GRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQTLLFSATMPPD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +  +  VRV +A       +ID R V V  SD+   + ++L+    + AIVF  
Sbjct: 192 ILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKDPALRRAIVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L+    + VA+ G  SQ  R  AL   + G   V +ATD+AARGID+ D
Sbjct: 252 TKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVATDIAARGIDIDD 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVSV 367
           +  VI+ +L + PE+ +HR GRT RAG  G+++     + + RA     ERL ++  + +
Sbjct: 312 ISHVINYDLPNIPESYVHRIGRTARAGASGVALSFC--DSEERAYLADIERLIQK-RLPL 368

Query: 368 VWEPAPSVEAIRERDAQR 385
           + +P   V  I  R AQ+
Sbjct: 369 LADPGVPVFQIDPRPAQQ 386


>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 452

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 196/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   LL+++D      
Sbjct: 15  AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLSKHDHPIKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +E       +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     I+     V    +   +  ++     K  +VF  
Sbjct: 194 IKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 PGYEPDPSIKA 384


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 192/355 (54%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +        
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPIL------- 61

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++  P    + AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+  
Sbjct: 62  EKIDPECGDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++
Sbjct: 122 THIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTML 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++     
Sbjct: 182 FSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVA
Sbjct: 242 FLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 302 ARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4]
 gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 199/352 (56%), Gaps = 15/352 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           LL+     +P  A      P A+ +APTRELA+Q+ ++   L   TG+ V +  GG    
Sbjct: 71  LLS-----TPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R+ L  G  I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+   
Sbjct: 126 VQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRR 185

Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P  K R  ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++  
Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L     + AIVF +T+ S  +    L     +   L+G++ Q++R   L+    G
Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKG 305

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              + +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 306 EIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISV 357


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 193/357 (54%), Gaps = 11/357 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + LS+  +   T +Q   +   L+ +D++  AQTG+GKT AFGL +   LL +  R  
Sbjct: 29  IVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEMLLKDAKRPD 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    L +APTREL  Q+   L+    KT + + V +GG S+++++  L+ G  I+V 
Sbjct: 89  NRTV-RTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQLERGTDILVA 147

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  + L++  +  +VLDEAD+MLDLGF  D+  I    P KR+ ++FSAT+ 
Sbjct: 148 TPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTMLFSATMP 207

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---- 246
             I  LA  Y  + V+V ++   +    ++     V+     N    IL+   + N    
Sbjct: 208 KTIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQ---NHKTEILKESISANPDGR 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  K L    F   ++ G  SQ +R  AL+  RDG  RV +ATDVAAR
Sbjct: 265 AMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVATDVAAR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           GID+P +  V + +L   P+  +HR GRT RAGR G+++ F  P   +  R  ERL 
Sbjct: 325 GIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRDIERLM 381


>gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N]
 gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N]
          Length = 462

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 22/389 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +QE  L   L  +D++  A+TGSGKT AFGL L  +L  +  R     AP AL
Sbjct: 23  GFEQMTPIQEQSLPLILDGRDLIAQAKTGSGKTAAFGLGLLQSL--DLTRL----APQAL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +EL  L      V V    GG +   +   L  GAH+VVGTPGR+ D
Sbjct: 77  VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAGRPQAESLARGAHLVVGTPGRVQD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L+++ LK +VLDEAD M+D+GF DDI  I    P KR+ L+FSAT    I  L+
Sbjct: 137 HLARGNLDLAALKTLVLDEADRMVDMGFYDDIVAIASHCPVKRQTLLFSATYPDNIRKLS 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   V + +++   S I+     +  +DR +A+  +L ++   + +VFC+T+   
Sbjct: 197 ARFLRNPAEVKVQTQH-DASRIEQIFYEIDEADRLDAVATLLAHYRPASTLVFCNTKIRS 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L        AL+G+L Q++R   L    +    V +ATDVAARG+D+ +L  VI
Sbjct: 256 HELIERLRADGISAQALNGDLEQRDRDEILIQFANQSCAVLVATDVAARGLDIQNLSAVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373
           + ++S + E  +HR GR+GR  +KG+++    P+ M        R AN+   ++ AP   
Sbjct: 316 NVDVSKDTEVHVHRIGRSGRGEQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367

Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401
             ++++R + A R L+ P+    IQG +K
Sbjct: 368 ADIKSLRSK-ADRPLRAPMVTLCIQGGKK 395


>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 205/383 (53%), Gaps = 9/383 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+S   + + T VQE ++   + +KD++V +QTGSGKT AF + +    L E D   
Sbjct: 14  ILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICE--LVEWDE-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTRELA+QV  ++  +     + V+   G    + + ++L+   H+VVG
Sbjct: 70  --NKPQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQKTHVVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI     + S++K +V+DEADEML +GF + IE I+ S  K+R  ++ SAT+ 
Sbjct: 128 TPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTVLLSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I TL   Y K+ +RV I  +N     +      V  + +   + +I       + I+F
Sbjct: 188 IDIETLCNKYMKEPIRVEIEEQNTTTDRVHQERYDVERASKIKLLRDITIVENPDSCIIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V      L    +    + G + Q++R   +   + G  R  IATDVAARGID+
Sbjct: 248 CNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIATDVAARGIDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ LVI+ ++  + E  +HR GRTGR GR G ++  + ++  +    + +     ++ +
Sbjct: 308 DNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLNDINQYIGKEIILK 367

Query: 371 PAP---SVEAIRERDAQRILQDP 390
             P   +V  +++  +++I+  P
Sbjct: 368 EKPDRETVNNLKQEFSEKIVTAP 390


>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 427

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 181/332 (54%), Gaps = 1/332 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E GY + T +Q   +   L   D+L  AQTG+GKT AF L +   LL ++      
Sbjct: 14  KALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPILQ-LLHQDQEHGRK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+Q+G   E     TG+   V  GGV+ + + R L  G  I+V TP
Sbjct: 73  RKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRTLAGGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  + L++  ++  VLDEAD MLD+GF  D++ +L + PKK++ L FSAT+ PA
Sbjct: 133 GRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKKQSLFFSATMPPA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +      +V +   +     I+   + V   ++++ + ++L+     + + F  
Sbjct: 193 IVNLAASILHQPKKVTVTPVSSTAEIINQHILFVDRENKNSLLEHLLQNRDISSVLAFTR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K L     +  A+ G  SQ  R  AL   + G  RV +ATD+AARGID+ D
Sbjct: 253 TKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRVLVATDIAARGIDVDD 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           LE VI+ +L +  E  +HR GRTGRAG +G +
Sbjct: 313 LEYVINIDLPNVAETYVHRIGRTGRAGNRGTA 344


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359


>gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 455

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 7/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 9   ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++  L  +  + V    GG  V ++ R L+   
Sbjct: 68  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 123 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 183 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 243 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E +
Sbjct: 303 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 356


>gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 542

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 197/357 (55%), Gaps = 10/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ +A  + G+   T +Q   +   L  +D++  A+TGSGKT AF L + + LL   
Sbjct: 115 VTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPILNALLDTP 174

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 175 QRF------FALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSLALAKKPH 228

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 229 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPRDRKTFLF 288

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL      
Sbjct: 289 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYILNELAGN 348

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 349 SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 408

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G S+  + Q    + +R E L
Sbjct: 409 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHL 465


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 1/339 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP +I +AL +  Y+  T +QE  +   L  +D+L  AQTG+GKT AF +     L  E 
Sbjct: 9   IPDII-KALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQLLREEK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL + PTRELA+Q+          T +   V  GGVS   +   L+    
Sbjct: 68  ESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQRVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL   I  K +NI H+K ++LDEAD MLD+GF  D++ I+  +P K++ L+FS
Sbjct: 128 ILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLKKQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA    K   ++ I   +     I      V  S++ + ++++L+ +   +
Sbjct: 188 ATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVLKDNNIVS 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    R  K L+ +     A+ G+ SQ  R +AL   ++   R+ IATD+AAR
Sbjct: 248 ALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILIATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+ +L  VI+ +L   PE  +HR GRTGRAG  G ++
Sbjct: 308 GIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAI 346


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 151/520 (29%), Positives = 258/520 (49%), Gaps = 45/520 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY   + +Q   +   L  +DV+  AQTG+GKT AF L + S + A +      +
Sbjct: 22  ALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILSRIDARS------T 75

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL +APTREL +QV      + +  TG+ V    GG +   +    + GA +VVGTP
Sbjct: 76  ATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRRGAQVVVGTP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++  L+ +VLDEADEML +GF+++++ IL  +P  +++ +FSAT+   
Sbjct: 136 GRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALFSATMPAP 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++ Y +D V + + +     ++   R + VA   + +A+  +L     +  I+F  
Sbjct: 196 IRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFEAMIIFVR 255

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+++     + L    F   A++G+LSQ +R   +  +RDG   + +ATDVAARG+D+  
Sbjct: 256 TKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDVAARGLDVER 315

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++        E+    A      +P 
Sbjct: 316 ITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPR-----EKGLLAAIEKATRQPL 370

Query: 373 PSVEAIRERD--AQRILQDPLFLDSIQGDE--------KKMVDVLLAKHDPE--KIAAGF 420
             +E     D  A+R+ +   F D+I            + +V   + +HD     IAA  
Sbjct: 371 TEMELPTPADVNARRVAK---FHDAITAALDAPAHAVFRDLVLGYVGEHDVPLADIAAAL 427

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
             + R      L  P+   P             +R     G  R     +S+  + VG  
Sbjct: 428 AVMTRQEPGEFLLPPDTAPP-------------AREKPARGAGRPRPVYASY-RIGVGHY 473

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           Q+     ++  L    G++R   G I ++ D + VE+ AD
Sbjct: 474 QRVTPGQIVGALANEGGLDRADFGRIDIRADYSLVELPAD 513


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 185/355 (52%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   +  + 
Sbjct: 14  IEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQAVQQKK 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA QV   L      T + +    GG S+  ++  L+ GA 
Sbjct: 74  RNGTPH----ALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKLEEGAD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  +++++FS
Sbjct: 130 ILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       V V ++  N     +      V    +   +  ++     + 
Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V +    M R  E L R
Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL----MSRDEEYLLR 360


>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 560

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   LR  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVQTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPAKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 195 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSVEA 377
            +V+  +EP P++ A
Sbjct: 375 RTVLERFEPDPTIAA 389


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 182/335 (54%), Gaps = 6/335 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G+   + +Q   + P L  KDVLV +QTGSGKT AF L +   L        PA  
Sbjct: 35  LAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQKLTEAG----PAPG 90

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL + PTRELA Q       L  +  +   V  GG S  ++ + + +G  I+V T GR
Sbjct: 91  PRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSVSDGVDIIVATHGR 150

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF-SATISPAI 193
           L D +    L + HL  +VLDEAD +LD  F   +  +    P +    +F SAT+   +
Sbjct: 151 LLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQPPQTVFCSATLPEPV 210

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK   ++ VRV IA+E+    +I  RA+ V   D+   +  +L+ H    +IVF  T
Sbjct: 211 MDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARLLK-HFEGRSIVFART 269

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    K L  H  +V  L G+ +Q  R+ AL + R GR  V + TD+A+RG+D+PD+
Sbjct: 270 KNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTTDIASRGLDIPDV 329

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +LVI+ ++   PE  +HR GRT RAGRKG++  +I
Sbjct: 330 DLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLI 364


>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
           leucogenys]
          Length = 455

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 187/337 (55%), Gaps = 4/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE G     ++QE  +   +R  D++  A TG+GKT+ FG+ L  T+ +  +      
Sbjct: 42  ALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETVTSAAEGAD--G 99

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL +QV R++E      G+ V    GG +   +   L+ G  IVVGTPG
Sbjct: 100 RPQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRTGVEIVVGTPG 159

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ K L +  +   VLDEAD MLDLGF +D+E +L + P++R+ ++FSAT+  AI
Sbjct: 160 RLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQTMLFSATMPDAI 219

Query: 194 TTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +L++ + K  + ++  +A++N   +     A L    ++   +  IL+       IVF 
Sbjct: 220 VSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQAKDRGLTIVFS 279

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R    L    F V A+ G+L Q  R  AL+  R G+  V +ATDVAARG+D+ 
Sbjct: 280 RTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVATDVAARGLDVR 339

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  VI+ +   + E  +HR GRTGRAG  G++V  +
Sbjct: 340 DVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFV 376


>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 444

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 210/381 (55%), Gaps = 12/381 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           I + I +ALSE   V  T +Q+  +   L E  DV+  A+TG+GKT AFGL L   +   
Sbjct: 10  ISEPILKALSELNIVEPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPLLQLI--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
               + +SA  A+ + PTREL  Q+ R LE    Y     + A C GG+ +  +   L+ 
Sbjct: 67  ---DTKSSAVQAVILVPTRELGHQIFRNLEDFSKYIPNISIAATC-GGIPIKPQIERLKT 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+V TPGRL D I+ K +++   + +VLDEADEM+ +  ++ ++ IL   PKK R L
Sbjct: 123 PTHIIVATPGRLIDLIQRKAVDLKQTQYLVLDEADEMVSI-LKESLDEILTEIPKKHRTL 181

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+   I  L +NY  K+ V+V+ + E   +  ID++ ++V   ++ + +++ L   
Sbjct: 182 LFSATLPGTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMHFLNSR 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+FC T+A+V++  K LA + F   A+ G L+Q  R   ++  R+G   + +ATD
Sbjct: 242 EGERGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINILVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ ++  V++  L    E  +HRSGRT RAG  G+S+ V+ +          RE
Sbjct: 302 LAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGLSLTVLQEEEVFEIADFERE 361

Query: 363 ANVSVVWEPAPSVEAIRERDA 383
             ++      PS  +I E + 
Sbjct: 362 LGLTFSKFQKPSALSIEENNT 382


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 208/380 (54%), Gaps = 11/380 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASA 74
           + R +V+ + +Q       L  +D++  A TGSGKT+ FGL +   + A+ D        
Sbjct: 79  ATRNFVSPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQRDNGVVSGKG 138

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA+Q+ + LE   ++  V      GGV    +   L++G  +VVGTPGR
Sbjct: 139 PFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKGPQVAALKSGVEVVVGTPGR 198

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L +  +   VLDEAD MLDLGF   I  I+  +   R+ LMFSAT   A+ 
Sbjct: 199 MEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMGLTRADRQTLMFSATWPAAVQ 258

Query: 195 TLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNIL-RYHGAKN----AI 248
            LA  +    V+V I S++   S  I  R  ++  + RD  ++ +L +YHGAK      I
Sbjct: 259 KLAIAFLSHPVKVTIGSQDLAASHSITQRVDVIDPNARDGRLLELLQQYHGAKGRKNRVI 318

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +    R  ++L+   ++ VA+ G++SQQ+R++A+   + G   + IATDVAARG+
Sbjct: 319 IFVLYKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGVVPLLIATDVAARGL 378

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRAE--RLFREAN 364
           D+PD+E+VI+       E+ +HR GRTGRAG+ G+  + F    +  R  E   + REA 
Sbjct: 379 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGIAHTFFCAGPDKPRAGELINVLREAG 438

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             V  E      A+++++++
Sbjct: 439 QEVPAELLKFGTAVKKKESK 458


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/326 (36%), Positives = 183/326 (56%), Gaps = 7/326 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y  +T +Q   L   L  KDV+   +TGSGKT AF L L   L  +  R        +L 
Sbjct: 24  YTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLLQKLNVKRFRIQ------SLI 77

Query: 80  IAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           + PTRELA QV  E+  L      + V    GG     +   L++GAHI+VGTPGR+ DH
Sbjct: 78  LCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSLEHGAHIIVGTPGRIQDH 137

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L +  +  +VLDEAD MLD+GF D IE I++ +PK R+ L+FSAT    I  +++
Sbjct: 138 LRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQTLLFSATFPDQIQQISR 197

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           N  +D V + + + +  ++   Y  ++ +  +R  A+  ++  +   +A+VFC+T+  V 
Sbjct: 198 NILRDPVSIKVEAMHDDNTISQYFYLVRSAEERMLALRLLILQYQPTSAVVFCNTKREVQ 257

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    F  +AL G+L Q++R  AL    +    + +ATDVAARG+D+ +L  V +
Sbjct: 258 EVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSILVATDVAARGLDIENLSAVFN 317

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS 344
             L+ + E  +HR GRTGRAG KGM+
Sbjct: 318 YNLAHDQEIHVHRIGRTGRAGSKGMA 343


>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
          Length = 478

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA     Y   T +QE  +   L+++D++  A+TGSGKT AF L +   LL   D+  P 
Sbjct: 70  EACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQALL---DKPQPL 126

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+G+  E L +   +  AV +GG+ +  +   L    HI+V TP
Sbjct: 127 ---FGLVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +V+DEAD +LD+ F   I+ +L   P++RR  +FSAT+S 
Sbjct: 184 GRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATLSS 243

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVF 250
            + +L +   +D VRV+++S   Q      + +LV    R D  ++ ++     K+ IVF
Sbjct: 244 KVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLVNEFTGKSTIVF 303

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 304 TRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDI 363

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q
Sbjct: 364 SKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQ 403


>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 565

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSASQPNKVQTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 195 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSVEA 377
            +V+  +EP PS+ A
Sbjct: 375 RTVLEGFEPDPSIAA 389


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 190/352 (53%), Gaps = 4/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A    G+     +Q   + P L  +D+   AQTGSGKT AF L + S ++A   +   A
Sbjct: 23  KATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRR-A 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ TP
Sbjct: 82  KTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +R   L +S  K +VLDE D MLD+GF +D++ I  ++   R+  +FSAT+   
Sbjct: 142 GRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMPDE 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK   K+ VR+ ++ ++   ++I    V      +   +  +L     K+ I+F  
Sbjct: 202 IAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAMKSVIIFSR 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R TK L    F+   + G  SQ  R  AL   R+G  R+ +ATD+AARGID+P 
Sbjct: 262 TKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILVATDIAARGIDVPG 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ-RRAERLFR 361
           +  V++ +L    E+ +HR GRTGR G  G+++ +    +N + R+ ER+ R
Sbjct: 322 ISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR 373


>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
          Length = 483

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 52  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 110

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 111 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 170

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 171 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 285 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 344

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 345 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 404

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 405 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 442


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 199/368 (54%), Gaps = 9/368 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   GY  +T +Q   L   +  KDV+   +TGSGKT AFGL L ++L  +  RF   
Sbjct: 20  QNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAAFGLGLLNSL--DVKRFYVQ 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S    L + PTRELA QV +E+  L  A   + V    GG+    +   L++GAHIVVGT
Sbjct: 78  S----LVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIVVGT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +H+R   L++S L  +VLDEAD ML++GF+  ++ I+++ PK+R+ L+FSAT   
Sbjct: 134 PGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPKQRQTLLFSATFPE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGAKNAIVF 250
            I  +A       V   + S     S I  R   V   D+    V +L   H  ++A+VF
Sbjct: 194 EIQAIASRIMTAPVMTQVES-THDTSTIKQRFYKVDNDDQRLLAVRLLLLQHKPESAVVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+         LA H F  +AL G+L Q++R   L    +G A V +ATDVAARG+D+
Sbjct: 253 CNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVATDVAARGLDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L+ VI+  ++ + E  +HR GRTGRAG KG++  +  +    +  RL       VV +
Sbjct: 313 ESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLARLEETMGQQVVND 372

Query: 371 PAPSVEAI 378
             P    +
Sbjct: 373 KLPPTSVL 380


>gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 645

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 192/347 (55%), Gaps = 8/347 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F+N+P+ + +A    G+  L  VQE  +   L  +DV+V A+TGSGKT AF L L   L
Sbjct: 23  TFDNLPEKLRQACDRAGWDRLMPVQERAIPFLLDNQDVMVQARTGSGKTGAFVLPLMEKL 82

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL + PTRELA QV +E   L      VVAV  GGV    +    +
Sbjct: 83  DPSRHTCQ------ALVMVPTRELAKQVAQEARTLAGDNLRVVAV-YGGVGYKEQLDAFR 135

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RR 181
            GA++VVGTPGR+ DH+  + L +  L+ V+ DEAD ML +GF  D+  +    P+    
Sbjct: 136 EGANLVVGTPGRILDHLMRRNLTLDDLRVVIFDEADRMLSVGFYPDMVEVKRYLPRNIDG 195

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT  P++  LA+ +      ++++S+    S I ++ V V    ++  ++ ++  
Sbjct: 196 AYMFSATFPPSVLRLAEEFMVKPEFLSLSSDEENVSAIAHQFVEVPAMGKERKLIKLIEL 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A++FC+T+ +V     +L++  F    L+ +L+Q +R   +  +++G+ R  +AT
Sbjct: 256 ENPTSALIFCNTKRNVEFTAALLSQFGFDAEGLTSDLTQNKREALMARIKEGKLRFLVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+P+L  V   E   +PE+ +HR+GRTGRAG  G ++ ++
Sbjct: 316 DVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAITLV 362


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 201/371 (54%), Gaps = 11/371 (2%)

Query: 1   MKIFEN------IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M I EN      IP ++ E L   G      +Q+  +   L+++D+L  AQTGSGKT+AF
Sbjct: 1   MNIKENAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           GL + S +LA  D+  P +A  AL + PTRELAVQ+   +  +   + +   + +GGVS 
Sbjct: 61  GLPVLSQILALGDKRYPKTA-RALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSR 119

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + ++ G  +++ TPGRL D +  K +++S  + +VLDEAD MLD+GF  D++ I  
Sbjct: 120 FAQIKRMKTGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAK 179

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              +KR+  +FSAT+   I TLAKN   + V++ I  +    + I  +   V  S++ + 
Sbjct: 180 LLHEKRQTALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSV 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L      + I+F  T+       + L +  + V A+ G  S   R  AL+  R+G 
Sbjct: 240 LNKFLTDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGS 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
             + +ATD+AARGID+P +  VI+ +L    EN +HR GRTGR    G ++ +  + ++ 
Sbjct: 300 VGILVATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQ 359

Query: 354 ---RRAERLFR 361
              R  ER+ R
Sbjct: 360 VRLRAVERVIR 370


>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
 gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 456

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 197/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   LL+++D      
Sbjct: 15  AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLSKHDHAVKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +E       +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     I+     V    +   +  ++     K  +VF  
Sbjct: 194 IKGLANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 PGYEPDPSIKA 384


>gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 427

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 200/381 (52%), Gaps = 4/381 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +G  L+E GYV+ T VQ A +   L  +DVL  A TGSGKT AF L L   L        
Sbjct: 20  LGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADK 79

Query: 71  PASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128
            A     L + PTRELA QV    L +     G + +    GGVSV+ + + L+ GA ++
Sbjct: 80  SAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVL 139

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L ++ + A VLDEAD ML LGF +++E +L + P++++ L+FSAT
Sbjct: 140 VATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSAT 199

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  L        +  ++ SE  Q S I+ R + V    +   + ++++ H    A+
Sbjct: 200 FPEEVRALTTKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQAL 257

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGI
Sbjct: 258 IFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGI 317

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +V
Sbjct: 318 DIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLV 377

Query: 369 WEPAPSVEAIRERDAQRILQD 389
            E  P  EA  E   + + Q+
Sbjct: 378 REQIPGFEANAEIPLEVLAQE 398


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 186/342 (54%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   L          
Sbjct: 14  KAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPILQNLDKHEKTIQ-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGT 131
               A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L++    I+VGT
Sbjct: 72  ----AVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLKHHVPAILVGT 127

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++S  K VVLDEADEMLD+GF  DIE IL    ++++ L+FSAT+  
Sbjct: 128 PGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGERKQTLLFSATMPK 187

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + +  D   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 188 PILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R + L+  R G+  + +ATDVAARG+D+ 
Sbjct: 248 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEILVATDVAARGLDIS 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 308 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEI 349


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 191/342 (55%), Gaps = 4/342 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL +  ++  +    +  
Sbjct: 14  KAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPILQSI--DKKEKAIQ 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
           +   A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L Q+   I+VGT
Sbjct: 72  AIIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKQHAPSILVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL  +   ++ L+FSAT+  
Sbjct: 132 PGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKNCKQTLLFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  + + + KD   V I ++      ID   V    S++ + +  ++   G   A+VF 
Sbjct: 192 PILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGPDLALVFG 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + +ATDVAARG+D+ 
Sbjct: 252 RTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDILVATDVAARGLDIS 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  +P++ +HR GRTGRAG+ G+SV FV P  +
Sbjct: 312 GVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEI 353


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 164/531 (30%), Positives = 258/531 (48%), Gaps = 40/531 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ GY   T +Q   + P L  +D+L  AQTG+GKT AF L   S L  +++R    
Sbjct: 22  KALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSRLDLKDNRTQ-- 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                L +APTRELA+QV    +  YA+   G  V    GG     + + L  GA +VVG
Sbjct: 80  ----VLVLAPTRELAIQVAEAFQ-TYARHLPGFHVLPIYGGQPYGIQLKQLSRGAQVVVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L +  L+ +VLDEADEML +GF DD+E+IL+ +P  R++ +FSAT+ 
Sbjct: 135 TPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVALFSATMP 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A  + K+   V I S     + I  R   V+   + +A+  +L        ++F
Sbjct: 195 EVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLHKLDALTRLLETEPFDAMLIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       + L        AL+G++ Q +R   ++ ++ G+  + +ATDV ARG+D+
Sbjct: 255 VRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVATDVVARGLDV 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSV 367
             +  V++ ++  + E+ +HR GRTGRAGR G ++ FV P  Q M +  ER  R+    +
Sbjct: 315 ERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKAIERATRQPIEPM 374

Query: 368 VWEPAPSVEAIR-----ERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               A  V A R     ER  + +  D L  FL+ +   +++         +P +IAA  
Sbjct: 375 HMPTAGDVNAQRIARFKERINEALGSDDLEPFLELVTDYQQE------TGAEPLEIAAAL 428

Query: 421 LRIH--RAGLCAPEEITPVSLVSGRDRFRDDS------RAFKVGGGSRD--NFKGSS--- 467
            R+   +  L   E   P        R   D+      R  K G  S      KG     
Sbjct: 429 ARLAQGKEPLLLDERAPPPPRAEFMPRPERDTGRAEKPRPRKSGAHSEAPLPLKGQPDVA 488

Query: 468 --WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              F + VG     +   L+  +   +G++ Q IG I +  + T V++ AD
Sbjct: 489 MERFVVDVGHAHGLKPGNLVGAIANEAGLDSQYIGHIDIGDETTTVDLPAD 539


>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
          Length = 460

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 49  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 195/343 (56%), Gaps = 8/343 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ +A+ + G+   T +Q+  +   +  KD++  AQTG+GKT AFG+ +   +    
Sbjct: 11  VPEIM-KAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPILEKI---- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R L+   +
Sbjct: 66  --DTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFRALRKKPN 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH++   +++SH++ +VLDE DEM+D+GF DDI  IL   P++R+ + FS
Sbjct: 124 IIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEERQTMFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+++ +D V V I +       ++   + +    + + +  +L     + 
Sbjct: 184 ATMPAPIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLLDMENPEL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+      T+ L +  +    L G+LSQQ+R   ++  ++G   + +ATDVAAR
Sbjct: 244 AIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
           G+D+  +  V + ++  + E  +HR GRTGRAG+ G+++ FV+
Sbjct: 304 GLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVV 346


>gi|255728265|ref|XP_002549058.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
 gi|240133374|gb|EER32930.1| hypothetical protein CTRG_03355 [Candida tropicalis MYA-3404]
          Length = 531

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 189/320 (59%), Gaps = 17/320 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L +KDV+  A+TGSGKT AFG+ A+ S +  +N   S       L I+PTRELA+Q+   
Sbjct: 155 LSKKDVIGVAETGSGKTFAFGVPAINSIITTKNKNLS------VLCISPTRELALQIYDN 208

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           L  L   T V      GGVS   + + ++  A++VV TPGRL D I    +N+S++  +V
Sbjct: 209 LIELTNDTNVKCVAVYGGVSKDEQIQKIKT-ANVVVATPGRLVDLINDGAINLSNIDYLV 267

Query: 154 LDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           LDEAD ML+ GF +DI+ I+ S+  + R+ LMF+AT    +  LA N+ K  ++V +   
Sbjct: 268 LDEADRMLEKGFEEDIKRIISSTNAEDRQTLMFTATWPKEVRELANNFMKSPIKVTVGDR 327

Query: 213 NRQHSD--IDYRAVLVALSDRDNAIVNIL-RYHGAKN-----AIVFCSTRASVSRFTKVL 264
           +   ++  I     +V   D++  ++N+L +Y G  N      +VF   +   SR   +L
Sbjct: 328 DELSANKRITQIVEVVNKFDKEKKLINLLHKYQGNNNDSENKILVFALYKKEASRIENLL 387

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             + FQV A+ G+LSQQ+R+ AL   + G+  + +ATDVAARG+D+P++++VI+      
Sbjct: 388 KRNRFQVAAIHGDLSQQQRTQALNSFKSGQCNLLLATDVAARGLDIPNVKVVINLTFPLT 447

Query: 325 PENLLHRSGRTGRAGRKGMS 344
            E+ +HR GRTGRAG+ G++
Sbjct: 448 IEDYVHRIGRTGRAGKTGIA 467


>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
 gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L+ +D++ SAQTG+GKT  F L L   +L EN +     
Sbjct: 15  AIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQ-ILNENAQPIKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +E       +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     I      V  + +   +  ++     +  +VF  
Sbjct: 194 IKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGSQNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSVV 368
           L  V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL  RE     +
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDIERLLKREIPRFAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 EGYEPDPSIKA 384


>gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Equus caballus]
          Length = 455

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
 gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
          Length = 483

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 195/346 (56%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 76  VPDLL-ESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +        L +APTRELA Q+    + L +  G+  +  +GG+ +  + RDL    H
Sbjct: 135 QPY------FGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 188

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGR+ DH+   KG  + +LK +V+DEAD +LD+ F   ++ IL   P KR   +F
Sbjct: 189 IIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYLF 248

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + VRV ++S+ +   ++    +LV    ++  ++++L    +K
Sbjct: 249 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMSK 308

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + IVF  T A   R T +LA  L F  V L G+LSQ +R  +L   +   A + IATDVA
Sbjct: 309 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATDVA 367

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q
Sbjct: 368 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 413


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 7/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   ++E GY + T +Q   +   L  +DVL  AQTG+GKT AFG+ L + ++ +
Sbjct: 24  GLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMM-Q 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A     L +APTRELA Q+   L+ L   T +   + +GGVS++ +   L  G 
Sbjct: 83  YGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGT 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++F
Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A +Y +  VR+ +    +    I      +A +++ + +  +L  H  +
Sbjct: 203 SATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ +ATDVAA
Sbjct: 263 RTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREA 363
           RG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  M + +A +     
Sbjct: 323 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNL 382

Query: 364 NVSVV----WEPAPSVEA 377
           N+ V     WE  P  +A
Sbjct: 383 NIPVASGRPWEVLPDAKA 400


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 182/325 (56%), Gaps = 6/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+A++   +  KDVL  AQTGSGKT+AFGL L +++  + +         A+ I PT
Sbjct: 30  TEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLLNSIKHDVNELQ------AIIIVPT 83

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV + LE +     +      GGV +  +++ L     +V+ TPGRL   I+   
Sbjct: 84  RELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVIQENK 143

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L ++  K+++LDEAD +LD+GF  D++ I+ + PKK + L+FSAT+   + +  +    +
Sbjct: 144 LELTQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEALLVN 203

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V+V    EN   + I+    LV    +  A++ +L  H     +VF   + +    TK 
Sbjct: 204 PVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADALTKR 263

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L++    V AL G  +Q+ER  AL+  ++G+ RV IATDV ARGI +  L +VI+ +L S
Sbjct: 264 LSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINFDLPS 323

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    +HR GRT RAG  G ++ ++
Sbjct: 324 HSATYVHRVGRTARAGSTGSAISLV 348


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 182/328 (55%), Gaps = 5/328 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+  T +Q+  +   + ++D++  AQTGSGKT AF L + +TLL +ND  +P + P  +
Sbjct: 236 GYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIINTLLNDNDDMTPGN-PFVV 294

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+  E       T + V V  GG +   +  ++ NG HI+V TPGRL D 
Sbjct: 295 VVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQIDNVNNGCHILVATPGRLLDF 354

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRMLMFSATISPAIT 194
           +  + +    +K VVLDEAD MLD+GF   +E +++     S ++R+ LMFSAT    I 
Sbjct: 355 VDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHETMKSKEERQTLMFSATFPGQIQ 414

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  +  + + V +       SD++     V    +   +  IL  +  K  +VF  T+
Sbjct: 415 ELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQKRKKLEEILESNDPKGTLVFVETK 474

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +      +L+E  F   ++ G+  Q+ER  AL+  + G+  + IAT VAARG+D+ ++ 
Sbjct: 475 RNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMYILIATSVAARGLDIRNVA 534

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
            VI+ +L    ++ +HR GRTGR G KG
Sbjct: 535 HVINYDLPKGIDDYVHRIGRTGRVGNKG 562


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/378 (33%), Positives = 204/378 (53%), Gaps = 7/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   ++E GY + T +Q   +   L  +DVL  AQTG+GKT AFG+ L + ++ +
Sbjct: 24  GLPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMM-Q 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A     L +APTRELA Q+   L+ L   T +   + +GGVS++ +   L  G 
Sbjct: 83  YGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGT 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++F
Sbjct: 143 DILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A +Y +  VR+ +    +    I      +A +++ + +  +L  H  +
Sbjct: 203 SATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ +ATDVAA
Sbjct: 263 RTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM-QRRAERLFREA 363
           RG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  M + +A +     
Sbjct: 323 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNL 382

Query: 364 NVSVV----WEPAPSVEA 377
           N+ V     WE  P  +A
Sbjct: 383 NIPVASGRPWEVLPDAKA 400


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 185/328 (56%), Gaps = 17/328 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAPLALAI 80
           +++Q+  + P +R +DV+  AQ+G+GKT  F +++     T L E           AL +
Sbjct: 48  SAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQ---------ALVL 98

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           +PTRELA+Q+   +  L     V    CIGG SV  + R L  G HIV GTPGR+ D IR
Sbjct: 99  SPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIR 158

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            + L   ++K ++LDE+DE+L++GF+D I  +    P   ++++ SAT+   +  +   +
Sbjct: 159 RRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTSKF 218

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASV 257
             D VR+ +  +      I  +   VA+   +   + + ++        A++FC+TR  V
Sbjct: 219 MTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +  + E+ FQV ++ GE+ Q+ER   +   R G +RV I TDV ARGID+ ++ LVI
Sbjct: 277 DWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVI 336

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N EN +HR GR+GR GRKG+++
Sbjct: 337 NYDLPTNRENYIHRIGRSGRFGRKGVAI 364


>gi|332525438|ref|ZP_08401597.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
 gi|332108706|gb|EGJ09930.1| ATP-dependent RNA helicase DbpA [Rubrivivax benzoatilyticus JA2]
          Length = 473

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 150/407 (36%), Positives = 211/407 (51%), Gaps = 15/407 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L + GY  +T +Q A L P L  +D++  A+TGSGKT AF L L + L A+  
Sbjct: 20  PAVLAN-LQQLGYECMTPIQAAALPPALAGRDLIAQAKTGSGKTAAFSLPLLARLDAK-- 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF    A  AL + PTRELA QV +E+  L  A+  V V    GG ++  +   L++GAH
Sbjct: 77  RF----ATQALVLCPTRELAEQVSQEIRRLARAEDNVKVLTLCGGAAIRPQLASLEHGAH 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           +VVGTPGR+ DH+    L +  L   VLDEAD MLD+GF +DI  +    P   KR+ L+
Sbjct: 133 VVVGTPGRVLDHLERGSLALEALTTFVLDEADRMLDMGFAEDIAAVARHCPPPSKRQTLL 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  LA  Y +D   V +A E    S I  R   V  S R +A+  +L+    
Sbjct: 193 FSATYPDDVAKLAARYLRDPQEVRLA-ETHAASQIVERFYEVTESQRLHAVGLLLQRFRP 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ + FC+T+        VL       + L G+L Q++R   L       A V +ATDVA
Sbjct: 252 ESTLAFCNTKQQCRDLVAVLQAQGIVALELHGDLEQRDRDQVLVRFAHRSASVLVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++  PE   HR GRTGRAG  G+   +   +   R  R+     
Sbjct: 312 ARGLDISKLEAVINVDITPEPEVHTHRIGRTGRAGESGLVFNLASLDEMGRVGRIDEMQG 371

Query: 365 VSVVWEPAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMV---DVL 407
              VW P   +EA + +   Q  L  P+    I G  K+ +   DVL
Sbjct: 372 RQSVWHPLAELEAELAKAGPQPPLLPPMVTLQILGGRKEKIRRGDVL 418


>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 516

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L      A    
Sbjct: 45  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103

Query: 62  LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
             A+  R                P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435


>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
 gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 524

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/395 (35%), Positives = 208/395 (52%), Gaps = 38/395 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L        L  
Sbjct: 49  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107

Query: 61  TLLAE----------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGV 103
           T   +            R  P + P  L + PTRELA+QV       G+ L  L   +  
Sbjct: 108 TQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS-- 165

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
                +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+
Sbjct: 166 ----ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF DDIE I+ ++P  R+ ++FSAT+   I +L     K+  R+ I  +    ++I    
Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTV 281

Query: 224 VLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V   D +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  
Sbjct: 282 HYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGA 341

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G
Sbjct: 342 RNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSG 401

Query: 343 MSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           ++V ++    Q   +R ER  R     NV   +EP
Sbjct: 402 IAVSLVHHAEQGALKRIERFVRTPLPVNVIEGFEP 436


>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 431

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++++GY   T VQ   +   L  +D+L  AQTG+GKT  F L L   L   +DR  P 
Sbjct: 14  KAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLLQIL---SDRKQPK 70

Query: 73  S--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +     AL + PTRELA QVG  ++       +  AV  GGV ++ +   L+NG  I++ 
Sbjct: 71  THRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITMLRNGVDILIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI  ++   PK R+ L+FSAT S
Sbjct: 131 TPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVRQNLLFSATYS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I TLA    ++   V +A  N     +    +LV    + + +  ++  H  +  +VF
Sbjct: 191 DDIKTLANTLLRNPAEVEVARRNTSSELVKQSVILVDCKRKSSLLGELIGKHKWEQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ T+ L +      A+ G  SQ  R+ AL   +    RV +ATD+AARGID+
Sbjct: 251 TRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFR---EAN 364
             L  V++ EL +  E+ +HR GRTGRAG +G +   V V   +  R  E+L     +A 
Sbjct: 311 DALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLRGIEKLINKKLDAR 370

Query: 365 VSVVWEPAPSVEA 377
           +   +EP PS++A
Sbjct: 371 IIEGYEPDPSIKA 383


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 193/344 (56%), Gaps = 7/344 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + ++L++  Y   + +QE  +   L   D++  AQTG+GKT  F L + ++L  E
Sbjct: 7   NLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPILNSLSKE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            +      +  AL + PTRELA Q+   ++ ++ +   + A C+ GG     + + +++G
Sbjct: 67  KNH-----SIRALILTPTRELATQIFENIK-MFGRYMHLRACCVYGGSPAAPQLKAIRSG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL D++    +++ H++ +VLDEAD MLD+GF  D+  I+   P  R   +
Sbjct: 121 CDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPNDRITAL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA++  K+   V I +E    S ID   +    S +   +VN+L     
Sbjct: 181 FSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLLNTESI 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T+    R  K L E     + + G+ +Q +R NALQ  R  + R+ IATDVA
Sbjct: 241 KKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILIATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ +L  + EN +HR GRTGRA ++G+S+ ++
Sbjct: 301 ARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLV 344


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 195/346 (56%), Gaps = 19/346 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           L++ G  + T +Q+  + P +R+ KDV+  A TG+GKT+AF L L   + ++++      
Sbjct: 16  LNKSGIADPTPIQKQSI-PKIRDGKDVIAEAATGTGKTLAFLLPLLENINSKSNEIQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q+  E   L     + +    GG  +  + + L N  H+++ TPG
Sbjct: 72  ---ALILTPTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKLNNNIHLIIATPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K +++S LK  +LDEAD+ML +GF++++E I+   P+K+++L FSATI  ++
Sbjct: 129 RLLDHLERKTIDLSKLKTFILDEADQMLLMGFKNEVESIISKMPRKKQLLCFSATIDSSV 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRD--NAIVNILRYHGAKNAI 248
             LA  Y KD + V I     +  DI   A+   +V  +DR   +A+  +L       AI
Sbjct: 189 KKLAYRYMKDPIEVFI-----KQDDISLDAIEQDIVETTDRKKRDALCKVLDEDNPFMAI 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V     VL    +    L  ++ Q +R   ++  R+   +  IATDVAARG+
Sbjct: 244 IFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLIATDVAARGL 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+  +  + + ++  + E+ +HR GRTGRAG  G + +F+ P+N++
Sbjct: 304 DINGITHIYNYDIPESVESYIHRIGRTGRAGESGYTCMFIDPKNIK 349


>gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
 gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
          Length = 383

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 200/352 (56%), Gaps = 8/352 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVINDLLHN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PIQEQRFR--GEPRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + + V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L    ++V  LSGE++Q +R   L+  + G+  V I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQGKNNVMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+  + ++
Sbjct: 307 ATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSED 358


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 186/344 (54%), Gaps = 11/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   +  + +R  P +
Sbjct: 24  ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81

Query: 74  A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126
             P AL + PTREL +QV  +L    ++L A     + V    GG     +   LQ G  
Sbjct: 82  GIPRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPYEPQIEALQKGVD 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P KR+ ++FS
Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201

Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   I TLA+ +  Q   +R      +  H   +  A      D+   +  IL+  G 
Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKVEMVARILQAEGR 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R G   V +ATDVA
Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRTGEVDVLVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 199/375 (53%), Gaps = 11/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   LR  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 26  AVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVQTP 85

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 86  QGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 146 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPAKRQNLLFSAT 205

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 206 FSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 265

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 266 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGTLRVLVATDIAARGI 325

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 326 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 385

Query: 365 VSVV--WEPAPSVEA 377
            +V+  +EP P++ A
Sbjct: 386 RTVLERFEPDPTIAA 400


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 190/342 (55%), Gaps = 11/342 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L E G    T +Q   +   +  KD+L  +QTG+GKT+AF L +   +     +  
Sbjct: 22  INDFLRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLEKIEVNKPQVQ 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L I PTRELA+Q+  E + L  K G+ +    GG  V R+ + L+   H+V+G
Sbjct: 82  ------SLIITPTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKLKGHIHMVIG 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHIR K +++S +  +VLDEAD+ML +GF +D+E I+  SP K++ ++FSAT+ 
Sbjct: 136 TPGRLLDHIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTMLFSATLP 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKNAI 248
           P I  LA  Y +    + I S  RQ      + +++ L +++    +  ++  +    AI
Sbjct: 196 PRIRALAARYMRKPADIRIQS--RQVILDKIKQIVIELEEKEKLTQLCRLIDENQPYLAI 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC TR   S     L +  +    L G+LSQ +R   ++     R ++ +ATD+AARG+
Sbjct: 254 IFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVATDIAARGL 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           D+  +  V   ++S   E+ +HR GRTGRAG  G +V FV+P
Sbjct: 314 DIEGVTHVYSYDISHYLESYIHRIGRTGRAGESGTAVTFVLP 355


>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
 gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
          Length = 436

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 198/375 (52%), Gaps = 12/375 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S++GY   + +Q   + P L EKDVL SAQTG+GKT  F L L   L   + R     
Sbjct: 15  AISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLHLL---SQRPVQKH 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++       +   V  GGV+   +   ++ G  ++V TP
Sbjct: 72  RPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATIRKGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      L++  ++  VLDEAD MLD+GF  DIE ++   P KR+ LMFSAT S  
Sbjct: 132 GRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFSATFSKD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   + V+V    EN     ID +   VA   +   I+ ++     K  +VF  
Sbjct: 192 IKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKTGLIIKLISEGNWKQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++  K +        A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+P 
Sbjct: 252 TKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVLVATDIAARGLDIPL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF-REANVSVV 368
           L  V++ E+ +  E+ +HR GRTGRAG  G ++ ++  +     R  E+L   +  V VV
Sbjct: 312 LPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRSIEKLIDMKIEVEVV 371

Query: 369 --WEPAP--SVEAIR 379
             +EP P  S E I+
Sbjct: 372 EGFEPDPNASTEPIK 386


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 198/354 (55%), Gaps = 6/354 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I ++L+  GY + T VQ +++   L ++D++V ++TGSGKT AFG+ +   L  +
Sbjct: 8   QLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPICEMLDWD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL + PTRELA+Q+  E+  +     + V    G      + R+L+   
Sbjct: 68  ENK------PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQARELKQKT 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++  L   VLDEADEML +GF + +E I++ +P+KR+ ++F
Sbjct: 122 HIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPRKRQTMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+++Y      + I S       +++    V   ++   + ++L     +
Sbjct: 182 SATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQEKVKLLQDLLMVENPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FCST+ +V    + L++  + +  L G L Q+ER   ++  + GR    ++TDVAA
Sbjct: 242 RCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYLVSTDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGID+  +  VI+ +L    ++ +HR GR GRAG+KG ++    +  QR  E +
Sbjct: 302 RGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEEI 355


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 218/413 (52%), Gaps = 9/413 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+SE G+   T +Q   +   +  +D++  AQTG+GKT AFG+     +   N++    
Sbjct: 15  KAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPYIERIQDPNNK---- 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+QV  E+  L    G+      GG S+  + + L+    I+VGTP
Sbjct: 71  -EIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQIKALKKRPQIIVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + ++++  V LDEADEML++GF +DI+ IL  +P  ++ LMFSAT+   
Sbjct: 130 GRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPSHKQTLMFSATMPGP 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA+ +  D   +   ++      I+ + V V   D+ +    ++     + AIVF  
Sbjct: 190 IKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVEVKEGDKFDVFCRLVDSQSPEKAIVFGR 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V    + L +  +    + G++ Q +R + ++  R G   + +ATDVA+RG+D+  
Sbjct: 250 TKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATELLVATDVASRGLDVTG 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +  + + ++  + ++ +HR GRTGRAG+ G +V ++    +     + +     +   P 
Sbjct: 310 ISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHLNLIEQSIKRQIPRRPK 369

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAAGFLR 422
           PSV+   E   Q+I  + L  ++   + +   K+ + LL ++D  ++ AG L+
Sbjct: 370 PSVDEALE-GKQKIAVEKLLSEAKDKNARQYHKLAEELLEENDSIELVAGALK 421


>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
 gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
          Length = 483

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 198/374 (52%), Gaps = 15/374 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L A    F PA+
Sbjct: 15  AVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNA----FQPAN 70

Query: 74  AP-----LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           A       AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IV
Sbjct: 71  ANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGVDIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT
Sbjct: 131 VATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA +       + +A  N     I  +   V    +   + +++R H     +
Sbjct: 191 FSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKREMLTHLIREHNWFQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AARGI
Sbjct: 251 VFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTLQVLVATDIAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE  
Sbjct: 311 DIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPLLRDIERLIKREIP 370

Query: 365 VSVV--WEPAPSVE 376
             V+  +EP P+ +
Sbjct: 371 QQVIAGFEPDPNAK 384


>gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 427

 Score =  204 bits (518), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 182/332 (54%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY + T +Q   +   L  +D+L  AQTG+GKT AF L L   L A   R +P  
Sbjct: 17  ALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLHRL-AMAPRPAPKG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L +APTREL  Q+    E         V    GGVS   +   L+ G  I+V  PG
Sbjct: 76  GARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQVNALKAGVDIIVAAPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I     ++S L+A+VLDEAD+MLD+GF   IE I+ + PK R  ++FSAT+  +I
Sbjct: 136 RLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDRHTVLFSATMPKSI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA++  +D  +V IA  +     I+   + V  +D+  A++ +LR  G   A+VF   
Sbjct: 196 ATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAMLRTPGIGQAVVFTLQ 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +     + E      AL G  SQ +R  AL   R G A+V +ATD+AARGID+  +
Sbjct: 256 KNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLVATDIAARGIDVDTV 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V + +L S PE+ +HR GRTGRAGR G ++
Sbjct: 316 THVFNHDLPSLPESYVHRIGRTGRAGRNGFAI 347


>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 455

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  KDVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250
             + + +  +  +V ++        +    V       +   +       A   KNAI+F
Sbjct: 192 RRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRLLREAKDLKNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R  AL+  R G   + +A+DVAARG+D+
Sbjct: 252 CNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  V + ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIV 349


>gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
 gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
           23344]
 gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 516

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 52  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 110

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 111 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 170

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 171 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 224

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 225 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 284

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 285 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 344

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 345 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 404

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 405 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 442


>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 513

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 49  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439


>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 513

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 49  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 108 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 167

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 168 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 221

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 222 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 281

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 282 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 341

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 342 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 401

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 402 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 439


>gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
 gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
          Length = 517

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 190/358 (53%), Gaps = 30/358 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A++E GY   T +Q   +   L  +DVL  AQTG+GKT +F L +   L     
Sbjct: 11  PKVL-QAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPMIQLLSRGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +     T +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQDTLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDI-----------------DYRAVLVALSD 230
           T++P I  +   +     R+ +A     + +I                 + RAVL AL +
Sbjct: 187 TMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEKRAVLRALIE 246

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            ++A +         NAI+FC+ +  V    K L ++ +    + G+L Q +R   L   
Sbjct: 247 AESATLT--------NAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDGF 298

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RDG  +  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G S F+I
Sbjct: 299 RDGSVKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTG-STFMI 355


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 194/370 (52%), Gaps = 16/370 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV  ++  +     +      G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  Y K    + I +       I++  + V   ++ + + +I       + I+FC T
Sbjct: 192 ENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   + G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARGIDIENI 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE-- 370
             VI+ ++    E+ +HR+GRTGRAG  G ++ FV P       ER   E    + +E  
Sbjct: 312 THVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYE-----ERFLVEIEEYIGFEIQ 366

Query: 371 --PAPSVEAI 378
              APS E +
Sbjct: 367 KIEAPSKEEL 376


>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
          Length = 514

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 51  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 109

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 110 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 169

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 170 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 223

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 224 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 283

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 284 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 343

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 344 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 403

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 404 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 441


>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 499

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 198/346 (57%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 94  VPDLL-ESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 152

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       AL +APTRELA Q+    + L +  G+  +  +GG+ +  + RDL    H
Sbjct: 153 QPY------FALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 206

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGR+ DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P KR   +F
Sbjct: 207 IIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRITYLF 266

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + V+V+++S+ +   ++    +LV    ++  ++++L     K
Sbjct: 267 SATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLNEFIGK 326

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + IVF  T A   R T +LA  L F  V L G+LSQ +R  +L   +  +A + +ATDVA
Sbjct: 327 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVA 385

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q
Sbjct: 386 ARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 431


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 187/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +       
Sbjct: 31  QTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPLIEKVVGQ------- 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  IVVGTP
Sbjct: 84  EGVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQIKALKRGPQIVVGTP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R+ ++FSAT+  
Sbjct: 144 GRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPADQRQTMLFSATMPK 203

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  L + + K    +   +       I+    +V   ++ +   N L  H  + AIVF 
Sbjct: 204 AIQELVQQFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFG 263

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+ 
Sbjct: 264 RTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAARGLDIS 323

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +  V + ++  + E+  HR GRTGRAG++G++V FV P  M
Sbjct: 324 GVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEM 365


>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 195/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFAPEIL-RAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMI 64

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              +E  R    S   AL + PTRELA Q+   +        V V    GGV +  + + 
Sbjct: 65  DKPSETQR----SNTRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  I+V TPGRL +HI+   LN+S++  +VLDEAD MLD+GF  DI+ +L +  K  
Sbjct: 121 IKRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNS 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT S ++  LA ++      +++  +N     +      V    +   +  ++ 
Sbjct: 181 QKMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQVVYPVEQRRKRELVSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  ++F +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +A
Sbjct: 241 KKNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R
Sbjct: 301 TEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEER 354


>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
 gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
          Length = 453

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL   
Sbjct: 32  VTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAP 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 92  QRL------FALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 145

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 146 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL      
Sbjct: 206 SATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 265

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 266 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 325

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 326 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 370


>gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
          Length = 433

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 196/348 (56%), Gaps = 5/348 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+P  +   +   G+  LT VQE  +   L +KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L+  +D+ +   AP AL +APTREL VQ+ ++   L    G  +    GGV   ++R+
Sbjct: 61  ARLM--SDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQ 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
            L  G  I++ TPGRL D+++   +++  ++A+V+DEAD M D+GF  D+ +IL   P  
Sbjct: 119 ALHAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAF 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT+S  +  LA  +   A ++ +A EN     I+     V+  ++   ++ 
Sbjct: 179 DRRQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEEVLYHVSRREKFALLLG 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+   AK  ++F +T+      T  L  + F+   +SG++ Q++R   L   ++GR   
Sbjct: 239 LLKKEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIHF 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + TDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG  G ++
Sbjct: 299 LVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAI 346


>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
 gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
          Length = 423

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           L  RG    T VQE  + P +R  +DV+  AQTG+GKT+AF       LL   ++  P  
Sbjct: 17  LKNRGISVPTPVQERAV-PAMRAGRDVIAQAQTGTGKTLAF-------LLPVLEKIKPQG 68

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A + AL IAPTRELA+Q+ R  E L A   +   +  GG  + R++  L+    +V+GTP
Sbjct: 69  AVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRRHPQLVIGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L +  +  VVLDEADEML LGF +D+E +L  + +  ++ +FSAT+   
Sbjct: 129 GRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQLALFSATMPER 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L K +  +  R+ I  E+    +I+  A+ V   ++ + +   +       A+VFC+
Sbjct: 189 IVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCA 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         LA   + V ALSG L+Q +R+  L+  R  + ++  ATD+AARG+D+  
Sbjct: 249 TKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE--ANVSV 367
           +  V + +L     + +HR GRTGRAG +G ++ ++        R+ E   +E  A  +V
Sbjct: 309 VTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKIESALKERLARAAV 368

Query: 368 VWEPAPSVE-AIRERDAQRILQ 388
             +P P+ + A  +++ +R++Q
Sbjct: 369 KKKPRPAPQKAQPDKEGRRVVQ 390


>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 636

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 184/329 (55%), Gaps = 3/329 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ GY + T +QE  +   L  +DV+  AQTG+GKT +F L +   L   +D  + A 
Sbjct: 169 AISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLEIL---SDSRARAR 225

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ TPG
Sbjct: 226 MPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATPG 285

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D     GL ++H   +V+DEAD MLD+GF  DIE I+   P  R+ L+FSAT++P I
Sbjct: 286 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 345

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +      + +A ++   + I    V+V    +   +  +L+    +NAIVFC+ 
Sbjct: 346 RKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVFCNR 405

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L +H F   AL G+L Q  R + L+  ++   +V + +DVAARGID+  L
Sbjct: 406 KRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGL 465

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             V + +L  + E+ +HR GRTGRAGR+G
Sbjct: 466 SHVFNFDLPFHAEDYVHRIGRTGRAGREG 494


>gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 540

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 7/334 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY  LT +QE  +   L  KD+   AQTG+GKTVAF + +   +L +        
Sbjct: 15  AIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPVIHNILTKG-----IQ 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL +APTREL +Q+  E + L   + G+     IGG     + +DL+    I+V TP
Sbjct: 70  GIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQNKDLEGLNGIIVATP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I+   ++IS+++  VLDEAD MLD+GF  DI ++L     +++ L++SAT+S  
Sbjct: 130 GRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKNRKQTLLYSATLSVE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  LA  +  + V + I  E      ID + V +   ++   + N I+        I+F 
Sbjct: 190 VMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNLIINSKEEGQGIIFT 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A++ +    L ++   V  +S EL Q++R   L+  + G+ R  +ATDVA+RGID+ 
Sbjct: 250 NYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYRYMVATDVASRGIDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++++V + +L  + EN +HR GRT RAGRKG ++
Sbjct: 310 NIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAI 343


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 192/365 (52%), Gaps = 17/365 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++  + +
Sbjct: 12  ILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGTK-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA    AL + PTRELA Q+G  +E       +  AV  GGV +  +   L  G  I+V 
Sbjct: 70  PAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNRGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    +   ++ +++ +  +  +VF
Sbjct: 190 DDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIELIKQNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRR 355
             L  V++ +L + PE+ +HR GRTGRAG  G +V                +I QN++RR
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLIKQNLERR 369

Query: 356 AERLF 360
               F
Sbjct: 370 PVEGF 374


>gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF]
 gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii]
          Length = 383

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 192/341 (56%), Gaps = 6/341 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + G+   T VQ   +   L+ +D++VSAQTGSGKT AF L +   +L E       
Sbjct: 15  KALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQILTEE---VST 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L + PTRELA+Q  +  E L A T +   + IGG +   +   L+    +++ TP
Sbjct: 72  SGTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKDPEVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL DHI     +   L+ +VLDEAD MLD+GF  D+  I  S   +R+ L+FSA++   
Sbjct: 132 GRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLLFSASLKHE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
            +  ++K++ +D V + + S + QH DI  + VL   +  ++  +  ++    A+  +VF
Sbjct: 192 GLGKISKSF-RDPVAIAVGSPDHQHQDICQQLVLADTIKHKEKLVEALIDEEQAQKTLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR    + + +L     +V  + G++SQ +R   +   R G   V +ATDVAARG+D+
Sbjct: 251 CNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVATDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             ++LV++  ++ + ++ LHR GRTGRAG +G ++ +I  N
Sbjct: 311 KGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSN 351


>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Meleagris gallopavo]
          Length = 447

 Score =  203 bits (517), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL   
Sbjct: 26  VTDVLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 86  QRL------FALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 IIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL      
Sbjct: 200 SATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 260 SFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVAS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 320 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 364


>gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2]
 gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 389

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 15  NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 74

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 75  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 132

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 133 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 192

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 193 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 252

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 253 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 313 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 358


>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
 gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
          Length = 515

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 201/356 (56%), Gaps = 10/356 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A  E  +   + +Q+  +   L+ KD++  A+TGSGKT AF L +   LL    R
Sbjct: 68  ETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALLENPQR 127

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI+
Sbjct: 128 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 181

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSA
Sbjct: 182 IATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 241

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 242 TMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSF 301

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 302 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 361

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E+L 
Sbjct: 362 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLL 417


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 4/338 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 153 PDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQQRSLRAGVH 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKLEEILRQVGPQ 391

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ARG+D+ +L++V++ ++  N E+ +HR GRTGRAG+ G
Sbjct: 452 ARGLDIKNLDVVVNYDMPLNIEDYVHRIGRTGRAGKTG 489


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 134/418 (32%), Positives = 217/418 (51%), Gaps = 17/418 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+++ GY   +++Q   +   L   D+L  AQTG+GKT AF L L S +   N    
Sbjct: 19  ILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLSRIDVTN---- 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128
              +   L +APTRELA+QV    +  YA+      V    GG+S   + R L+ G  +V
Sbjct: 75  --KSTQLLVLAPTRELAIQVSEAFQS-YARNIPDFHVLPIYGGMSYDTQLRQLRRGVQVV 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +P   +  +FSAT
Sbjct: 132 VGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDGHQTALFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  +A  +  +   V I ++    + I  +   V+   + +A+  IL  +     I
Sbjct: 192 MPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTRILEMNEHDGMI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+A+     + L        AL+G++SQ  R   +  ++ G+  + +ATDV ARG+
Sbjct: 252 IFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +++ R    ++ 
Sbjct: 312 DVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQIERATRQAIE 371

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAAGF 420
               P+   I E+   R  Q     D+I  ++      L A +      DP K+ A  
Sbjct: 372 RMQLPTASDINEQRVARFKQR--ITDTIDNEDLDFFIELAASYQKENDVDPVKLGAAL 427


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 203/358 (56%), Gaps = 10/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +A+++ G+V  T++Q+  +   L  +DV+  AQTG+GKT AFGL L   + + 
Sbjct: 168 GLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSR 227

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           ++         AL +APTRELA+Q    +  + A++ G+ V    GG     +   L+ G
Sbjct: 228 DNVVQ------ALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKGG 281

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I +S P  RR  +
Sbjct: 282 AQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPADRRTAL 341

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L    A
Sbjct: 342 FSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDA 401

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +ATDVA
Sbjct: 402 EAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVA 461

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERL 359
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V F+ P+     R+ ERL
Sbjct: 462 ARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERL 519


>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 529

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 140/398 (35%), Positives = 204/398 (51%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 65  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 123

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                               R  P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 124 AQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 183

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 184 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 237

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I 
Sbjct: 238 LDMGFIDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIA 297

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L 
Sbjct: 298 QTVHYVDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLP 357

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 358 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 417

Query: 340 RKGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 418 RSGTAVSLVHHAEQGALKRIERFVRAPLPVNVVEGFEP 455


>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 497

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 200/361 (55%), Gaps = 19/361 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+P  +  A+S+  +   T +Q   +   L  KD++  AQTG+GKT AF L + + L   
Sbjct: 60  NLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGIITDLIDY 119

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L E  R      P AL +APTRELA+Q+  + + L   T + V   +GG+   ++R+ L
Sbjct: 120 PLEEKPRLG---EPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQRQKL 176

Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           +     I+V TPGRL D +  K +++ +++ +VLDEAD ML +GF  D+  I+ ++P+K 
Sbjct: 177 KKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTPRKG 236

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L++SAT +  I  LA+ +  DAV++ IA E +   ++     LV+  ++   + N
Sbjct: 237 ADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGEEKYRLLRN 296

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF + R    R    L +   +   +SGE+ QQ+R   L+  R G+ +V
Sbjct: 297 YMDKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFRSGKIQV 356

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349
            +ATDVA RGI +  +  V + +L  +P++ +HR GRTGRAG  G S+        F+IP
Sbjct: 357 LVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACEDDSFLIP 416

Query: 350 Q 350
           +
Sbjct: 417 E 417


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 194/364 (53%), Gaps = 12/364 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I + L  +G    T +QE  +     E DV+  AQTG+GKT AF       LL   
Sbjct: 8   ISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAF-------LLPMF 60

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SP  +    L + PTRELA+Q+  E   L     + +    GG  +  + + L+   
Sbjct: 61  ENMSPNINTVQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLKGNI 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+ TPGRL DHI+   +N+  LK +VLDEAD+ML +GF++++E I+  + KK+++L F
Sbjct: 121 HLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKKKQILCF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHG 243
           SAT++  +  LA  Y K+   V+I SE     +I  +  +V  +DR   +A+  +L    
Sbjct: 181 SATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNI--KQAVVETTDRRKQDALCKVLDEDN 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+FC T+  V      L E  +    + G+L+Q +R   ++  +    +  IATDV
Sbjct: 239 PFMAIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLIATDV 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  + + +E 
Sbjct: 299 AARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDIIEKEI 358

Query: 364 NVSV 367
            V++
Sbjct: 359 KVTI 362


>gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE]
 gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU]
 gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900]
 gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
 gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE]
 gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC
           17978]
 gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
          Length = 383

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 198/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 194/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQANRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLMVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
           400]
 gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 467

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 204/378 (53%), Gaps = 14/378 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E L   G+ ++T +Q   L P L  +DV+  A TGSGKT AFGL L + L  +  
Sbjct: 20  PELL-ENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNKLDVKRF 78

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R         + + PTRELA QV +++  L      V V    GGV +  +   L++GAH
Sbjct: 79  RIQ------TMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGAH 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DH+    L++S++  ++LDEAD ML++GF+  I+ I+ ++P++R+ L+FS
Sbjct: 133 IIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTLLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT    I  +A       V V + +   +H ++        + D    +  +      K 
Sbjct: 193 ATFPDQIQAIADQILYKPVMVKVEA---KHDNLTIDQHFYRIEDNQGRLEALRLLLLDKQ 249

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +A+VFC+T+    +    L E  F V+AL G+L Q++R   L    +  AR+ +ATDV
Sbjct: 250 PESAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ V +  ++ + E  +HR GRTGRAG  G +     +    +   +    
Sbjct: 310 AARGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIEEAM 369

Query: 364 NVSVVWEPAPSVEAIRER 381
           N  VV EP P + A+ ++
Sbjct: 370 NKDVVSEPLPPMSALNKQ 387


>gi|330465173|ref|YP_004402916.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808144|gb|AEB42316.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 572

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/356 (36%), Positives = 192/356 (53%), Gaps = 9/356 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P+ +  AL+ +G      +Q A +   L  +DVL   QTGSGKT+AFGL L +
Sbjct: 35  TFEALGLPEPLARALARQGITTPFEIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPLLA 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+ DR  P S P AL + PTRELA+QV   L  L    GV +   +GGV   R+   
Sbjct: 95  RI-ADGDRARP-SRPRALILVPTRELAMQVNDALAPLGRTIGVFLKTAVGGVPYDRQIDA 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   
Sbjct: 153 LRRGVEVMVATPGRLADLIERGICKLDDVEITVLDEADQMADMGFLPEVTDLLAKTPAHA 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  D V  + A      S +D+  +L+  SD+     +I  
Sbjct: 213 QRLLFSATLDADVDALVQRFMTDPVTHSTAPATAAVSTMDHHLLLIPPSDKFPVTASIAA 272

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    IVF  T+  V R    LA    +   L G  +Q+ R+  L   R+GR  V +A
Sbjct: 273 RAG--RTIVFARTQLGVDRLVSQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVLVA 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355
           TDVAARGI +  + LV+H +   +P++ LHR+GRT RAG  G ++  V+P+  QRR
Sbjct: 331 TDVAARGIHVDGVTLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLVLPK--QRR 384


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 184/340 (54%), Gaps = 10/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T++Q   +   L  +D+L  AQTG+GKT +F L + + L     R   A 
Sbjct: 39  AVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPMLTLLEKGRAR---AR 95

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV            + +A+ IGGVS   + + L  G  +++ TPG
Sbjct: 96  MPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDRGTDVLIATPG 155

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 156 RLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPPEI 215

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAI 248
             L + + ++  R+ +A  +    ++     L A   +D      LR    GA   +NAI
Sbjct: 216 QRLTETFLQNPARIEVAPTSSTAENVAQ--FLKATDSKDYEKRAALRDLLEGAEDLQNAI 273

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V+   + L  H + V AL G++ Q+ R   L   R G  ++ +A+DVAARG+
Sbjct: 274 VFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASDVAARGL 333

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P++  V + ++ SN E+ +HR GRTGRAGRKG +  ++
Sbjct: 334 DIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLV 373


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 186/343 (54%), Gaps = 16/343 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L   GY   T +Q+ ++   L  K+V+  A TGSGKT AF + +   ++ E +   
Sbjct: 18  ILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEEN--- 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL VQV  E+  +  K  + V    GG  + ++ R L+  +HIV G
Sbjct: 75  ---LPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSHIVTG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR   L +  +  +V+DEAD MLD+GF D+++ ILD    + R+ +FSAT+ 
Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGAK 245
           P I   A ++  D V   I +E  + ++    A+   L + DN       +N+L     +
Sbjct: 192 PEIREFAGSHIHDMVM--IFTEQPEAAE---NAITEELFETDNENKFKVFLNVLYRENPQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC TR  V+   + L  H      + GEL Q+ER   +   R G  R  IATDVAA
Sbjct: 247 CCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGIDL ++  VI+ +  +  E  +HR GRTGR GR G +V ++
Sbjct: 307 RGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLV 349


>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 211/372 (56%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ EA+    +   T +Q   +   L  KDV+  A TGSGKT AF + +  +L  + 
Sbjct: 73  IPELL-EAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAIPILQSLWHDQ 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +        L ++PTRELA Q+    + L +  G+     +GG+ +  + RDL    H
Sbjct: 132 LPY------YCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMDQARDLMRKPH 185

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGR+ DH+   KG ++ +LK +V+DEAD +LDL F  +++ IL   P++R   +F
Sbjct: 186 VIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRVIPRERNTYLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + VR+ ++S+ +   ++    +LV+   ++  +V++L     K
Sbjct: 246 SATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYLVHLLNEFVGK 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + I+F  T A   R T +LA  L F  V L G+LSQ +R  +L   + G+A + +ATDVA
Sbjct: 306 SIIIFTRTCAHSQR-TALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKANILVATDVA 364

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q    M  R E + +
Sbjct: 365 ARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEMYLRIEAVLQ 424

Query: 362 EANVSVVWEPAP 373
           +    +  +PAP
Sbjct: 425 K---KLPKDPAP 433


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 15/374 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           Q+I E ++   Y++ T VQ+  L     ++D++  AQTGSGKT AF L + + L  +N  
Sbjct: 168 QIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPILNMLFEDNHC 227

Query: 67  -----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   S A  PLAL +APTREL+ Q+  E      ++ +   V  GG S+  + R+L
Sbjct: 228 ENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL 287

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK- 178
            +G +++V TPGRL D +    +++  ++  VLDEAD MLD+GF   I  I++    P  
Sbjct: 288 SHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPA 347

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ LMFSAT    I TLA+++    + + +      + +I    + VA  D+ + +V 
Sbjct: 348 GKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVR 407

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+       A+VF  T+       K L +  F V ++ G+  Q ER +ALQ  R GR  
Sbjct: 408 LLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHALQSFRSGRTP 467

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQ 353
           + IAT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G+ G +        QN+ 
Sbjct: 468 ILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSATSFFSEKNQNVV 527

Query: 354 RRAERLFREANVSV 367
           R    L RE+  +V
Sbjct: 528 RDLVELLRESKQAV 541


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 7/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I + ++E GY   T +Q A +   L +KD++  AQTG+GKT AF L L   +L   D 
Sbjct: 10  QDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLLHQILQAKDS 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +     + L + PTRELA QV        AK  +   V  GG S++ +   L+ G  ++
Sbjct: 70  NTTKGIQV-LVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDALRQGCDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL + I    +++S L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L FSAT
Sbjct: 129 VATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSRQTLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
            +  I  L+K   KD   + + S N   + ++ + +     DR +A+++ L   G+KN  
Sbjct: 189 FNDEIFALSKTLLKDPQLIEVNSRNTTATQVE-QTIYAVDQDRKSALLSFL--IGSKNWQ 245

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       K + +      ++ G+ SQ  R   L   + G+ R  +ATDVAA
Sbjct: 246 QVLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRALVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+  L+ V++ EL  N E+ +HR GRTGRAG  G+++ ++ +
Sbjct: 306 RGIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSE 350


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
 gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
          Length = 523

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 200/355 (56%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL    R+
Sbjct: 74  TLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRY 133

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI++
Sbjct: 134 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 187

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 188 ATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 247

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + +
Sbjct: 248 MTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGNSFM 307

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 308 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 367

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E+L 
Sbjct: 368 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLL 422


>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 492

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 185/342 (54%), Gaps = 6/342 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL  +GY   T +Q   + P L  +D+L  AQTG+GKT AF L  +   L E D 
Sbjct: 13  QPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP-SIDRLREADN 71

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P  +   L +APTRELA Q+ +  +   A  G+ V   +GG SV ++R  L  G  I+
Sbjct: 72  QTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKLHRGTDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  K   ++ ++ +VLDEAD+MLDLGF   +  I D  P +R+ L FSAT
Sbjct: 132 VATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQTLFFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---- 244
           +   I  L   Y ++ V+V++         ID    +V   ++   I  IL+   A    
Sbjct: 192 MPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMILKGRHAVPGK 251

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+    R  K L +   +  A+ G  SQ +R  AL   +  +  + IATDV
Sbjct: 252 QERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKTPILIATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ EL + PE  +HR GRT RAG+ G+++
Sbjct: 312 AARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAI 353


>gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 445

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 10/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL    A+
Sbjct: 11  LICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G 
Sbjct: 71  ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMF
Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT SP IT+LA  +  +   V+    N     I  +   +  S + NA++++++     
Sbjct: 185 SATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AA
Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++
Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 223/408 (54%), Gaps = 13/408 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +   L+  G+   T VQ   + P L  +D+L +A TG+GKT++F + +   + A 
Sbjct: 68  NISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIERMEAN 127

Query: 66  NDRFSPAS----APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++   P++     P+ +L + PTRELA+QV      +  ++     +  GG+S + +   
Sbjct: 128 SE---PSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLDQ 184

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VV TPGRL D +R + +N++ ++ +VLDE D MLD+GF   I  I+ + PK R
Sbjct: 185 LSRGPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKTR 244

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + +SAT+   IT + ++Y +  VR+ I + ++    ++ + V   + D+   ++N + 
Sbjct: 245 QTMCYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVELK-VFTVMQDQKLGLLNQML 303

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCI 299
                  +VF  T+    R +K L E L  V   + G+ SQ +R++AL+    GR R+ +
Sbjct: 304 NEHEGTFLVFSRTKHGADRISKKL-EKLGHVADVIHGDRSQSQRTSALKGFSTGRHRILV 362

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAER 358
           ATDVAARGID+ D+  V++ +L    E+ +HR GRTGRAG+KG+ + FV+PQ  +  A +
Sbjct: 363 ATDVAARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQE-RSDARK 421

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + RE  +   W+ A       ER+    L  P  L +++    K  DV
Sbjct: 422 MERELKIKFEWKEADKNLEKEERNKPVDLSGPSDLMNMETRAWKTGDV 469


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 136/356 (38%), Positives = 202/356 (56%), Gaps = 27/356 (7%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P ++  AL+E GY   T +Q   +   L   D++ SAQTG+GKT AF L  A 
Sbjct: 3   FENLNLHPAIL-RALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLP-AL 60

Query: 61  TLLAENDRFSPASA--PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            LLA      PA +  P  L + PTRELA QV        ++L A+T  +V    GG+  
Sbjct: 61  NLLATP---HPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIV----GGMPY 113

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I  
Sbjct: 114 PLQNKLLSQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISS 173

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233
           + P +R+ LMFSAT    I  +AK   K    + IA++  +H++I+ + + V  ++ ++ 
Sbjct: 174 ALPSERQTLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNK 233

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQM 289
            + ++L   G   AIVF ST+    R   +LAE L+    +  AL G+++Q  R+  L  
Sbjct: 234 LLEHLLIAPGVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTK 289

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +R G  RV +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G+++
Sbjct: 290 LRHGDVRVLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAL 345


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
 gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
          Length = 423

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 184/337 (54%), Gaps = 2/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GY   T +QE  +   L  KD+L  AQTG+GKT AF L +   ++ E  +
Sbjct: 10  QHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPILQNIMEE--K 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                A  AL +APTRELA+Q+G   +       + + V  GGVS + +   L+ G  I+
Sbjct: 68  TVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGTDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D IR   + ++ ++  VLDEAD MLD+G   D+  I+   PKKR+ + FSAT
Sbjct: 128 IATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA     + V+V +   +     I      VA +D+ N ++++L+    + ++
Sbjct: 188 MPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVYRVAKTDKTNLLIHLLKNKQVERSL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K L +  F   A+ G  SQ  R  AL+  +  +  V +ATD+AARGI
Sbjct: 248 VFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P+L  VI  +L   PE  +HR GRTGRAG  G ++
Sbjct: 308 DVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAI 344


>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
 gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
          Length = 545

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 141/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L      A    
Sbjct: 76  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 134

Query: 62  LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
             A+  R                P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 135 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 194

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 195 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 248

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 249 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 306

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 307 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 366

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 367 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 426

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 427 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 466


>gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345]
 gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 436

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 199/352 (56%), Gaps = 15/352 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           LL+     +P  A      P A+ +APTRELA+Q+ ++   L   TG+ V +  GG    
Sbjct: 71  LLS-----TPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYE 125

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R+ L  G  I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+   
Sbjct: 126 VQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRR 185

Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P  K R  ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++  
Sbjct: 186 MPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMP 245

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L     + AIVF +T+ S  +    L     +   L+G++ Q++R   L+    G
Sbjct: 246 LLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKG 305

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              + +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV
Sbjct: 306 DIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSV 357


>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
 gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri]
          Length = 382

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 200/352 (56%), Gaps = 12/352 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G+   +++Q+  +   L+ +DV+  AQTGSGKT AF L +  +LL E   +    
Sbjct: 33  ACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQSLLDEPRTYH--- 89

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              +L ++PTRELA+Q+  ++E L    GV  A  +GG+ +  +   L    H+VVGTPG
Sbjct: 90  ---SLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGKRPHVVVGTPG 146

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           R+ DH+   KG  +  LK +VLDEAD +L+L F ++I+ IL   P+ RR  +FSAT++  
Sbjct: 147 RVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRTQLFSATMTSK 206

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +   +D V+V ++++      +    + +    +D     +     A   IVF  
Sbjct: 207 VQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAKHKDCYATYLFNELSASTLIVFAR 266

Query: 253 TRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           T    +R   ++A +L F  V + G++SQ +R  ALQ  + G   + IATDVA+RG+D+P
Sbjct: 267 T-CDQTRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKAGERNILIATDVASRGLDIP 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
            +++VI+ ++  N ++ +HR GRT RAGR G++V ++ Q    + ++ ERL 
Sbjct: 326 SVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLI 377


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 203/373 (54%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++ G  + T +Q   +   L  +DVL  AQTG+GKT AFG+ L S +L + 
Sbjct: 3   LPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRML-DY 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A     L +APTRELA Q+   L+ L   T + + + +GGVS++ + + +  G  
Sbjct: 62  GRKPAAHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGTD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 122 ILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y    VR+ +    +  + +      +A +++ + +  +L  H  + 
Sbjct: 182 ATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLTEHKDER 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  KVL +  F   A+ G  SQ +R  AL   + G+ +V +ATDVAAR
Sbjct: 242 TLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ-----RRAERLF 360
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  M+     ++  ++ 
Sbjct: 302 GLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKVMKIT 361

Query: 361 REANVSVVWEPAP 373
                   WEP P
Sbjct: 362 IPTASGSPWEPVP 374


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score =  203 bits (516), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 185/340 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +   L  +
Sbjct: 7   NISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNQQ 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL ++PTRELA+Q+   ++     T +     +GGVS   + R LQ GA
Sbjct: 67  PPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K++ L F
Sbjct: 127 DILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   IT L +    + V+V I   +     I+    L+   ++   +  +++     
Sbjct: 187 SATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDSSIV 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  + L +      A+ G+ SQ  R  AL   + G  RV +ATD+AA
Sbjct: 247 SALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++
Sbjct: 307 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 346


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 201/378 (53%), Gaps = 8/378 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+SE+GY   + +Q+  +   L  KDVL SAQTG+GKT  F L +   L+A N R    
Sbjct: 14  KAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHNLIA-NPRQGRR 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+   +        +   V  GGV+ + + R ++ G  I+V TP
Sbjct: 73  KV-RALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT +  
Sbjct: 132 GRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQNLLFSATFNKD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   + V V    EN     +D +   V  S +   ++  +        +VF  
Sbjct: 192 IKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINEGNWDQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R ++ L +      A+ G  +Q  R  AL   + G+ RV +ATD+AARG+D+P 
Sbjct: 252 TKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVATDIAARGLDIPL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVW 369
           L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++  +     R  E+L  E   S V 
Sbjct: 312 LPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKLLGEKLHSEVL 371

Query: 370 E---PAPSVEAIRERDAQ 384
           E   P  ++E +++  A+
Sbjct: 372 EGFQPTDTLEQLKKEAAE 389


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 189/344 (54%), Gaps = 6/344 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE +    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250
             + + +  +  ++ ++        +    V       ++   +  ++R     +NAI+F
Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIRAATDLQNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   + +A+DVAARG+D+
Sbjct: 252 CNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQK 355


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           EO147]
 gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           C6786]
          Length = 509

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 141/397 (35%), Positives = 208/397 (52%), Gaps = 42/397 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60
           P+++  AL   GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L        L  
Sbjct: 49  PEIV-SALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 107

Query: 61  TLLAE----------NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGV 103
           T   +            R  P + P  L + PTRELA+QV       G+ L  L   +  
Sbjct: 108 TQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS-- 165

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
                +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+
Sbjct: 166 ----ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDM 221

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  + R  S  +   
Sbjct: 222 GFIDDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEI--QQRLESRTNIAQ 279

Query: 224 VLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q
Sbjct: 280 TVHYVDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQ 339

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR
Sbjct: 340 GARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 399

Query: 341 KGMSVFVI---PQNMQRRAERLFR---EANVSVVWEP 371
            G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 400 SGTAVSLVHHAEQGALKRIERFVRAPLPVNVIEGFEP 436


>gi|332531386|ref|ZP_08407291.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332039170|gb|EGI75591.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 468

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/347 (37%), Positives = 193/347 (55%), Gaps = 10/347 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE +P      E L   GY+ +T++Q A L   L+ +DV+  A+TGSGKT AF  ALA
Sbjct: 9   KSFETLPLSAAAQENLRRLGYLEMTAIQAASLPAALQGRDVIAQAKTGSGKTAAF--ALA 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118
                +  RF+  S    L + PTRELA QV  E+  L  A+  + V    GGV +  + 
Sbjct: 67  LLAKLDARRFAVQS----LVLCPTRELADQVTTEIRRLARAEDNIKVVTLAGGVPLRGQA 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAH+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P 
Sbjct: 123 ASLEHGAHVVVGTPGRVIDHLERGNLGLDALATLVLDEADRMLDMGFVDDIVKVARQCPA 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  LA  + ++ V V + +++     I+ R   V    R   +  +
Sbjct: 183 QRQTLLFSATYPEGIAKLAAQFLREPVTVKVQAQHGSE-QIEQRWYEVREEQRLPGVARL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +    + + FC+T+A      ++L    +  +AL G+L Q+ER   L    +    V 
Sbjct: 242 LEHFRPVSTLAFCNTKARCRELAELLQAQGYSALALHGDLEQRERDQVLVRFANSSCSVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+D+  L  VI+ + S +P+  +HR GRTGRAG+ G+++
Sbjct: 302 VATDVAARGLDIAGLAAVINVDTSPDPQAYVHRIGRTGRAGQTGLAL 348


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 13/373 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T++Q   +   L  +D+L  AQTG+GKT AF L L S +  +  +    
Sbjct: 32  KALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSRIDIKLKK---- 87

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTRELA+QV    +   A+  G  V    GG +   +   L+ G H++VGT
Sbjct: 88  --PQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKRGVHVIVGT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D ++   L+++ +  +V+DEADEML +GF DD+E+IL+ +P  R++ +FSAT+  
Sbjct: 146 PGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVALFSATMPA 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A  Y  D   V I         I  R  +V  + + +A+  IL        IVF 
Sbjct: 206 PIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAETFDAIIVFV 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    +  VAL+G+++Q+ R   +   + G+  + +ATDVAARG+D+ 
Sbjct: 266 RTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDVAARGLDVE 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSVV 368
            +  VI+ ++ +  E+ +HR GRTGRAGR G ++ FV P+   M +  E+  R+    + 
Sbjct: 326 RVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTTRQ---QIE 382

Query: 369 WEPAPSVEAIRER 381
               PS EAI ++
Sbjct: 383 MMKLPSTEAINDK 395


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 198/367 (53%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +  ++  +G+   T +Q       L  +DV+  AQTGSGKT++F L  A   +   
Sbjct: 68  FPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALP-AMLHINAQ 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+AL +APTRELAVQ+ +E     + + +      GG     + RDLQ G  
Sbjct: 127 PLLAPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVE 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 187 IVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++ +D ++VNI S E   + +I     + +  ++ N ++  L    A+
Sbjct: 247 ATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHLDQISAE 306

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           NA  ++F +T+      TK L +  +  +A+ G+  Q+ER   L   + GR+ + IATDV
Sbjct: 307 NAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---F 360
           A+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAG KG+S      +  + A  L    
Sbjct: 367 ASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNAKSARELIGIL 426

Query: 361 REANVSV 367
           REA  +V
Sbjct: 427 REAKATV 433


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 186/345 (53%), Gaps = 7/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I +AL+++G ++   +Q   L   L  +DV+  A+TG+GKT+ FG+ L    L   +   
Sbjct: 71  ISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 130

Query: 70  --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              PAS +P AL + PTRELA QV  EL    AK  V +    GG +   +   L+ GA 
Sbjct: 131 DEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAYEPQIEALEKGAE 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D +    L++ H+  VVLDEADEMLDLGF  D+E IL  +   R+ ++FS
Sbjct: 191 VVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILARTRPDRQTMLFS 250

Query: 187 ATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+  A+  LA+ Y      +   +   E+   + +          ++   +  IL+  G
Sbjct: 251 ATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNKVEVVSRILQARG 310

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ + +R  + L    F   AL G+L Q  R  AL+  R G+  V +ATDV
Sbjct: 311 RGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFRHGKVDVLVATDV 370

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 371 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFV 415


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 204/361 (56%), Gaps = 9/361 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AFGL + S +LA  
Sbjct: 14  LPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQILALG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNG 124
           D+  P +A  AL +APTRELAVQ+   +    A  G  ++ C+  GGVS  ++ + ++ G
Sbjct: 74  DKRCPKTA-RALILAPTRELAVQIDETIRT--AAKGAHLSTCLIFGGVSRLKQIKRMEAG 130

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +R K +++S  + ++LDEAD MLD+GF  D++ I     ++R+  +
Sbjct: 131 VDVLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTAL 190

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LAK    D V++ +  +     +I  +   V  +++ N +  +L     
Sbjct: 191 FSATMPREIAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVLSKLLTNPAF 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVF  T+      T+ LA+  + V  + G  SQ  R +AL+  R+   ++ +ATD+A
Sbjct: 251 NSVIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILVATDIA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RA-ERLF 360
           ARGID+P +  VI+ +L    E+ +HR GRTGR G  G ++ +  + ++R   RA ERL 
Sbjct: 311 ARGIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRAIERLI 370

Query: 361 R 361
           R
Sbjct: 371 R 371


>gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 374

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 192/350 (54%), Gaps = 1/350 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  +   L +KD+L  AQTG+GKT +F + +   L   
Sbjct: 7   NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQHLHL- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N      S   AL + PTRELA+Q+   +E     T +   V  GGV+   +   L  G 
Sbjct: 66  NKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + + +++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K+ V++ +  ++     I      V   ++   +++IL+    +
Sbjct: 186 SATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  GM++    Q  +++
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQ 355


>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
 gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
          Length = 484

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 186/343 (54%), Gaps = 16/343 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L   GY   T +Q+ ++   L  K+V+  A TGSGKT AF + +   ++ E +   
Sbjct: 18  ILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEEN--- 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL VQV  E+  +  K  + V    GG  + ++ R L+  +HIV G
Sbjct: 75  ---LPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSHIVTG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR   L +  +  +V+DEAD MLD+GF D+++ ILD    + R+ +FSAT+ 
Sbjct: 132 TPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFSATLK 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGAK 245
           P I   A ++  D V   I +E  + ++    A+   L + DN       +N+L     +
Sbjct: 192 PEIREFAGSHIHDMVM--IFTEQPEAAE---NAITEELFETDNENKFKVFLNVLYRENPQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC TR  V+   + L  H      + GEL Q+ER   +   R G  R  IATDVAA
Sbjct: 247 CCIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGIDL ++  VI+ +  +  E  +HR GRTGR GR G +V ++
Sbjct: 307 RGIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLV 349


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 7/330 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + E L   GY + + +Q   + P L+  D L  +QTG+GKT AF + +   L  + +
Sbjct: 26  PETV-EHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVLELLKEQQE 84

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTREL+ QV  E + +   + + +AV +GG  +  + + ++ G  +
Sbjct: 85  E------PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQKIERGVDV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D  + K L++ +++  VLDEAD MLD+GFR D+EFIL   PK+R+ L+ SA
Sbjct: 139 VVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKERQTLLLSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  + KD VR++I  +N     ++     V    +   ++ +L     K A
Sbjct: 199 TLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQFYCTVDEHRKLQLLIKLLVQEKPKQA 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+    +        L  V  L G+L Q +R   ++  R G+ R+ IATD+  RG
Sbjct: 259 IVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIATDIVGRG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           ID+  +  +I+ ++  + ++ +HR GR GR
Sbjct: 319 IDVGGISHIINYDIPEHSDDYVHRIGRAGR 348


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
           I + + + L E GY   + +Q A +   L  +D+L  AQTG+GKT AF L L S   L +
Sbjct: 14  IAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLLSRLNLKS 73

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ 122
            N +         L +APTRELA+QV    +  YA+      V    GG +   + R L+
Sbjct: 74  RNTQL--------LILAPTRELAIQVAEACQT-YARNLPDFHVLPIYGGQAYDSQLRQLK 124

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DD+ ++L+ +P+ R++
Sbjct: 125 RGAQVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQI 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   I ++A+ +  D   V I ++    + I  + + V+ + + +A+  IL   
Sbjct: 185 ALFSATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSGNQKLDAVTRILEMQ 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+++     + L+   +   AL+G++SQ  R   +  ++ G+  + IATD
Sbjct: 245 AFDAMLVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +    QR  + + R 
Sbjct: 305 VVARGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKSIERA 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL 387
               +     PS + I E+  QR +
Sbjct: 365 TRQKIESMQLPSTDDINEKRVQRFV 389


>gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium
           sticklandii]
          Length = 423

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 188/344 (54%), Gaps = 6/344 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   L+ KD++  AQTG+GKT+AF L L   +L EN      S P  L + PT
Sbjct: 26  TKIQEQAIPLILKGKDIIGKAQTGTGKTLAFVLPLIQ-MLDEN-----ISIPQVLILTPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+   +E L   +   V    GG  V +++  L+N A  VVGTPGR+ DHIR   
Sbjct: 80  RELALQITTVVEELLKDSAFDVVSVYGGHDVEKQKNQLKNNAQFVVGTPGRILDHIREGS 139

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +N  +LK VV+DEAD+M+  GF +D++ + D +P+K + ++FSATI   I  LA+    +
Sbjct: 140 INFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQKIQKMIFSATIPDMIRKLARKIMNN 199

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
           A+ ++I  E+    +I    V      R  ++   L+      A++FC ++   +     
Sbjct: 200 AINIDIDPESVVIDNIRQVVVRTTEERRLQSLEMALKEFKPFMAMIFCKSKERANELYDN 259

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           +    + V  L G+ SQ +R N ++  R+ +    + TD++ARG+D+  +  V + ++  
Sbjct: 260 MVNLRYDVEILHGDFSQNKRENIMKRFRELKFPFLVTTDISARGMDIDGITHVFNYDIPR 319

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             E  +HR GRTGRAG KG++V  +      + +++ +   +S+
Sbjct: 320 QIEYYIHRVGRTGRAGEKGIAVSFVADKEVEQMKKIQKTVGISI 363


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 193/369 (52%), Gaps = 12/369 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   K+   V +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-------FVIPQNMQRRA 356
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++       +V    +++  
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYI 365

Query: 357 ERLFREANV 365
           +R   E  V
Sbjct: 366 DRKLNEVTV 374


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++  R  
Sbjct: 12  ILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE-LLSQGPRAR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+   +        +  AV  GGV +  +   L+ G  I+V 
Sbjct: 71  SKQV-RALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLKRGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   ++ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I TLAK    + V +++   N   + +      V  + +  A+V +++    +  +VF
Sbjct: 190 DEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQGDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLV 347


>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
 gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 125/335 (37%), Positives = 189/335 (56%), Gaps = 10/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T++Q A        +DV+  A+TGSGKT+AFGL     +L    +   +  PLA+
Sbjct: 92  GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSCRPLAV 150

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA+Q+  +L     K  + VA   GGV    +R  L++ A +VV TPGRL D 
Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDL 209

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197
                L++  +K +VLDEAD MLD GF  DI+ I+   P  KR+ +MF+AT  P +  LA
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269

Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIV-F 250
             +    V V I    +++ R +S I     +V   +++  +V IL  H  G  + ++ F
Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +    R  ++L    F+V  + G+LSQQER  +L+  + G A V +ATDVAARG+D+
Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P ++LV++       E+ +HR GRTGRAG  G ++
Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAI 424


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 185/340 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +   L  +
Sbjct: 7   NISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNQQ 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL ++PTRELA+Q+   ++     T +     +GGVS   + R LQ GA
Sbjct: 67  PPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K++ L F
Sbjct: 127 DILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKKQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   IT L +    + V+V I   +     I+    L+   ++   +  +++     
Sbjct: 187 SATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMKDPSIV 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  + L +      A+ G+ SQ  R  AL   + G  RV +ATD+AA
Sbjct: 247 SALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++
Sbjct: 307 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAI 346


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 545

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 375 RTVLEGFEPDPTI 387


>gi|117619806|ref|YP_855172.1| DEAD-box ATP dependent DNA helicase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561213|gb|ABK38161.1| ATP-dependent RNA helicase, dead box family [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 406

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/322 (38%), Positives = 182/322 (56%), Gaps = 6/322 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ+  +   L  +D+L  A+TGSGKT+AFGL L   L   +DR         L + PT
Sbjct: 24  TRVQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQRLDPASDRVQ------GLVLVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQV   L+   A  G+ +    GGV+   ++ +L  G  ++V TPGRL D +  + 
Sbjct: 78  RELAVQVSEALQGPAAGLGLRLVTLCGGVAQALQQAELALGPQLLVATPGRLRDLLAQQL 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L +S L+ +VLDEAD +L++GF  DI+++L++ P +R+ L+FSAT+   +  LA     +
Sbjct: 138 LGLSQLRHLVLDEADRLLEMGFWPDIQWLLNAMPVERQTLLFSATLPAELDALATGLLTE 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            VRV     N    DI+ R  LV  S +  A++++L+ H     +VF S R       + 
Sbjct: 198 PVRVEADPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQVLVFISARDDADGVARK 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           LA+    V AL GE  Q  R  AL   + G+ RV +ATD+ ARGI +  L LVI+ +L +
Sbjct: 258 LAKAGITVAALHGEKEQAVREQALGDFKAGKVRVLVATDLMARGIHVEALPLVINLDLPA 317

Query: 324 NPENLLHRSGRTGRAGRKGMSV 345
           +    +HR GRT RAGR G+++
Sbjct: 318 SAPVYVHRIGRTARAGRSGLAI 339


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D   
Sbjct: 64  ICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGW 123

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  
Sbjct: 124 EELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FS
Sbjct: 184 VVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA 244
           AT+   I  LA++     V V     + Q +  D +  +      D+   I  IL+ +  
Sbjct: 244 ATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDV 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVA
Sbjct: 304 EKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++
Sbjct: 364 ARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLV 407


>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 423

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/382 (34%), Positives = 209/382 (54%), Gaps = 16/382 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           L  RG    T VQE  + P +R  +DV+  AQTG+GKT+AF       LL   ++  P  
Sbjct: 17  LKNRGISVPTPVQERAV-PAMRVGRDVIAQAQTGTGKTLAF-------LLPVLEKIKPQG 68

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A + AL IAPTRELA+Q+ R  E L A   +   +  GG  + R++  L+    +V+GTP
Sbjct: 69  AVVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQKEKLRRHPQLVIGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L +  +  VVLDEADEML LGF +D+E +L  + +  ++ +FSAT+   
Sbjct: 129 GRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQDYQLALFSATMPER 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L K +  +  R+ I  E+    +I+  A+ V   ++ + +   +       A+VFC+
Sbjct: 189 IVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCASINEEAPYLAMVFCA 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         LA   + V ALSG L+Q +R+  L+  R  + ++  ATD+AARG+D+  
Sbjct: 249 TKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQILCATDIAARGLDIEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE--ANVSV 367
           +  V + +L     + +HR GRTGRAG +G ++ ++        R+ E   +E  A  +V
Sbjct: 309 VTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRKIEAALKERLARAAV 368

Query: 368 VWEPAPSVE-AIRERDAQRILQ 388
             +P P+ + A  +++ +R++Q
Sbjct: 369 KKKPRPAPQKAQPDKEGRRVVQ 390


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score =  203 bits (516), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
           HTCC2601]
          Length = 430

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 197/368 (53%), Gaps = 5/368 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + EAL   G+   T +Q   +   L   DVL  AQTG+GKT+AFGL L   LLA+  + 
Sbjct: 12  TLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDGLLAQPGKP 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +P +   AL +APTREL  Q+   L  L   T + V   +GG S++R+   L  G  I+V
Sbjct: 72  APKTVK-ALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSRGTDILV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  K +++S ++ +VLDEAD+MLD+GF   +  I       R+ ++FSAT+
Sbjct: 131 ATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQTMLFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  L+  Y  +  RV ++   +    I      V  + + + +  +L        +V
Sbjct: 191 PKQMEELSSAYLTNPRRVQVSPPGKAADKITQSVHFVDKAGKPSKLRELLGRDDESLTLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  K L    +   ++ G  SQ +R  A++  RDG   V +ATDVAARGID
Sbjct: 251 FARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFREANVS 366
           +P +  V++ +L   P+N +HR GRT RAGR+G ++ F  P   ++ R+ ++L +  ++ 
Sbjct: 311 IPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQKLMK-IDIP 369

Query: 367 VVWEPAPS 374
           V    AP+
Sbjct: 370 VASGDAPT 377


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 179/344 (52%), Gaps = 2/344 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  N+ + I +AL   GY   T +QE  +   L  +D+L  AQTG+GKT AF + +  
Sbjct: 2   LFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+          AL + PTRELA+Q+    +       +   V  GGV    +   
Sbjct: 62  LLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++ TPGRL D +    +N+  ++  VLDEAD MLD+GF  D++  +   P KR
Sbjct: 122 LHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     D ++V +   +     I+     V   D+ N +++IL+
Sbjct: 182 QTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNLLIHILQ 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF  T+    R  K L +   +  A+ G  SQ  R  AL   +    R+ +A
Sbjct: 242 DKTIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TD+AARGID+ +L  VI+ EL + PE  +HR GRTGRAG  G+S
Sbjct: 302 TDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGIS 345


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 191/350 (54%), Gaps = 8/350 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL E G  +  ++QE  L   LR +D++  A+TG+GKT+ FG+ +   L    D
Sbjct: 3   PEIV-RALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTREL VQV R+L       G+      GG    ++   L++G  +
Sbjct: 62  -----GTPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDL 116

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGRL D    + L +  ++A+VLDEADEMLDLGF  DIE IL   P++R+ ++FSA
Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSA 176

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   I TLA+ +  Q   +R   A     H             D+   I   ++ +G  
Sbjct: 177 TMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRG 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+ +  + +  L E  F   A+ G+L Q  R  AL+  R G+  + +ATDVAA
Sbjct: 237 LSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAA 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RGID+  +  V++ +   + +  +HR GRTGRAGR+G+++ ++  + + R
Sbjct: 297 RGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPR 346


>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
 gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
          Length = 438

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 184/336 (54%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S++GY   + +Q   +   L  KDVL SAQTG+GKT  F L +   LL++        
Sbjct: 15  AISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ-LLSQQPPLR--K 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++       +   V  GGV+   +   L+NG  I+V TP
Sbjct: 72  RPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRNGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    K L+++ ++ +VLDEAD MLD+GF  DI+ +++  PK+R+ L+FSAT S  
Sbjct: 132 GRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQNLLFSATFSKD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA++     V V    EN     ++ +   V    +   ++ ++        +VF  
Sbjct: 192 IKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTELLIKLISEGNWSQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R TK L        A+ G  +Q  R+ AL   + G  R+ +ATD+AARG+D+P 
Sbjct: 252 TKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRILVATDIAARGLDIPL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 312 LPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLV 347


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 191/339 (56%), Gaps = 1/339 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++ +AL +  Y   T +Q+  + P L  +D+L  AQTG+GKT AF +     L  + 
Sbjct: 9   IPSIL-KALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQLLHKDG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL I PTRELA+Q+            +  AV  GGVS   +   LQ G  
Sbjct: 68  APRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEAALQKGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++ K +++ +++ ++LDEAD MLD+GF  D++ I+  +P +R+ L+FS
Sbjct: 128 ILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQRQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  +A +  ++ V+V I   +     I      V   ++ + ++++L+    ++
Sbjct: 188 ATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLLKDPSIES 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    R  + L +      A+ G+ SQ  R  ALQ  ++   RV +ATD+AAR
Sbjct: 248 AIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+ +L  VI+ EL + PE  +HR GRTGRAG+ G+++
Sbjct: 308 GIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAI 346


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 190/338 (56%), Gaps = 7/338 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  Y   T +Q+  +   L + DV+  AQTG+GKT AF L +   L++      P 
Sbjct: 18  KAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLIS----VQPC 73

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              L AL + PTRELA QV +        T V + +  GGVS  ++  +L+ G  I++ T
Sbjct: 74  KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +R + +++S+++ +V DEAD MLD+GF+++I+ I    PK ++ L+FSAT + 
Sbjct: 134 PGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLLFSATFAD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVF 250
            I  ++KN   +   V I  +N+   D++ + V    +DR   + + L      K  +VF
Sbjct: 194 DIYKMSKNILVEPKMVEIDEKNKAADDVE-QLVYGVDADRKRELTSFLIGSRNWKQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       K + +   + +A+ G+ SQ  R  AL   ++G+ R  IATDVAARGID+
Sbjct: 253 TRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  VI+ EL  N E+ +HR GRT RAG  G++V ++
Sbjct: 313 KGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLV 350


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 140/413 (33%), Positives = 212/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRRL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R   L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT   +I TLA+   K+ V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 559

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 31  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 90

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 91  HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 150

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 151 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 210

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 211 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 270

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 271 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 330

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 331 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 390

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 391 RTVLEGFEPDPTI 403


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 190/343 (55%), Gaps = 16/343 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G V+   +QE  L   L   D++  A+TG+GKT+AFG+ +  T+LA  +      
Sbjct: 99  ALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQTVLAAKEGAD--G 156

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL VQV  ++    A+ G+ V    GG +   +   L+ G  IVVGTPG
Sbjct: 157 RPQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPG 216

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L+++ +  +VLDEADEMLDLGF  D+E I+   P +R+ ++FSAT+   +
Sbjct: 217 RLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTMLFSATMPGPV 276

Query: 194 TTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            +LA+ + K  V V              RQH    +RA  +   D+   +  +L+  G  
Sbjct: 277 ISLARRFMKRPVHVRAEQPDEGRTVPTTRQHV---FRAHAL---DKMEVLARVLQAGGRG 330

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  TR +  +  + LA+  F   A+ G+L Q +R  AL+  R G+  V +ATDVAA
Sbjct: 331 LAMVFVRTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLVATDVAA 390

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  +  V++ +   +    LHR GRTGRAG  G+++  +
Sbjct: 391 RGIDINGVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFV 433


>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
 gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
          Length = 383

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMNDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  R+     P AL +APTRELA+Q+  + + L    G+ V   +GGV   +++  L 
Sbjct: 69  PIQEQRYR--GEPRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQLN 126

Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 KAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA +D+   +  IL
Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQEIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    +  ++F + R  V +    L    ++VV LSGE++Q +R   L   ++G+  + I
Sbjct: 247 RDEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG  G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSI 352


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 193/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E  + + A
Sbjct: 14  KALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA+   +D + + ++  N     +    V V    +     ++L+ +    A+VF  
Sbjct: 193 IRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWHQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G +V                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 191/350 (54%), Gaps = 8/350 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL E G  +  ++QE  L   LR +D++  A+TG+GKT+ FG+ +   L    D
Sbjct: 3   PEIV-RALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGD 61

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTREL VQV R+L       G+      GG    ++   L++G  +
Sbjct: 62  -----GTPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDL 116

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGRL D    + L +  ++A+VLDEADEMLDLGF  DIE IL   P++R+ ++FSA
Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSA 176

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   I TLA+ +  Q   +R   A     H             D+   I   ++ +G  
Sbjct: 177 TMPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRG 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+ +  + +  L E  F   A+ G+L Q  R  AL+  R G+  + +ATDVAA
Sbjct: 237 LSMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAA 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RGID+  +  V++ +   + +  +HR GRTGRAGR+G+++ ++  + + R
Sbjct: 297 RGIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPR 346


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score =  203 bits (516), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 134/387 (34%), Positives = 219/387 (56%), Gaps = 21/387 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+V+  A++ +G+   + +Q   +   L   D+L  AQTG+GKT AF L L +      
Sbjct: 13  LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLA------ 66

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
            R  P+   P  L +APTRELA+QV    E  +AK   G+ V    GG     + + L+ 
Sbjct: 67  -RLDPSLREPQMLILAPTRELAIQVATACEE-FAKDIKGLQVLPIYGGGEYRTQLKGLRG 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++VGTPGR+ DH+    + +++LKA+VLDEADEML +GF DD++++L+ +P   ++ 
Sbjct: 125 GAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLA 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+ P I  +A  + K    V I +      + I  R   VA  ++ +A+  IL   
Sbjct: 185 LFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+ +     + L     +  AL+G++ QQ+R   +Q ++D R  + IATD
Sbjct: 245 EHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V ARG+D+P +  V++ ++  +PE  +HR GRTGRAGR+G ++  +    Q++ R+ ER+
Sbjct: 305 VVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERI 364

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386
            R+   S+     PSV+ +   +A+RI
Sbjct: 365 TRQ---SIEKMALPSVDDL---NAKRI 385


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
 gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
          Length = 455

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 190/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TG GKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 186/337 (55%), Gaps = 6/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           A+ ++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     R +PA 
Sbjct: 15  AVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLHRL----SRGNPAR 70

Query: 73  -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +A  AL + PTRELA QV   +        +   V  GGV+++ +   ++ GA ++V T
Sbjct: 71  SNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQMLAMRKGADVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L+   L+ ++LDEAD MLD+GF  DI  I++  PK R+ LMFSAT S 
Sbjct: 131 PGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKDRQTLMFSATFSD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I TLAK    + V++++A  N     I      V    +   + ++++++  +  +VF 
Sbjct: 191 EIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHLIKHNNWQQVLVFM 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L     Q  A+ G  SQ  R+ AL   +DG  RV +ATD+AARGID+ 
Sbjct: 251 RTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLVATDIAARGIDIA 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ EL +  E+ +HR GRTGRAG +G ++ ++
Sbjct: 311 QLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLV 347


>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 414

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 187/352 (53%), Gaps = 5/352 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L+++GY   T++Q   +   L  +D++ SAQTG+GKT AF L L   
Sbjct: 5   FSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLLQR 64

Query: 62  LLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL  +      S  P AL + PTRELAVQV   +      T +   V  GGVS+  +   
Sbjct: 65  LLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQATK 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL DH+R   LN+S +  +V DEAD MLD+GF D+I  IL   P KR
Sbjct: 125 LAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPAKR 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           +  +FSAT S AI  L+K       R+ +   N     ++ + V    SDR   ++ +++
Sbjct: 185 QTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVE-QIVYAVDSDRKTELICHLI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +     ++F   + +     + +     +  A  G+L Q  R   L   + G+ +  +
Sbjct: 244 KKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKIKALV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+ +L+ V++ E+    E+ +HR GRTGRAG  G +V +  ++
Sbjct: 304 ATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSED 355


>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
          Length = 383

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 2   VTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 62  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 115

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 116 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 176 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 236 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 296 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 340


>gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 854

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 203/380 (53%), Gaps = 9/380 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + L+E G  N   +Q A +   L  + VL  A+TGSGKT+AFGLA  + L  + 
Sbjct: 72  LPEELVKKLAENGVHNTFPIQAATIPDALAGRHVLGKARTGSGKTLAFGLAALANLKGKR 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      PLAL + PTRELA+QV   L       G  +A   GG  ++++   L+ G  
Sbjct: 132 AR---KGKPLALVLVPTRELAMQVSDALTPYGFAVGADIAAVYGGAPMYKQVYSLRRGVE 188

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++S ++  +LDEAD+M D+GF   +  +L  +    + L+FS
Sbjct: 189 LLVATPGRLTDLIEQGECDLSEVEIAILDEADQMADMGFMPIVTELLSQTDPTGQRLLFS 248

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH---- 242
           AT+  A+  L + Y  D V  ++ +++   + +D+  ++V  +D+      I   H    
Sbjct: 249 ATLDGAVDELVRQYMTDPVLHSVTADSEDSAQMDHHLLIVEPADKSMVTAEIAARHTPGD 308

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  T+    R  + + E     +AL G ++Q+ R+  L   ++GR  V +AT
Sbjct: 309 DDGRRTILFARTKLGADRIAEKIREAGVSALALHGGMTQRARTKTLADFKEGRVPVLVAT 368

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI +  ++LV+H + + +P++ LHR+GRT RAG  G  V ++    ++   RL  
Sbjct: 369 DVAARGIHVDGIDLVLHVDPAGDPKDYLHRAGRTARAGESGTVVTLVLPKQRKSTMRLLE 428

Query: 362 EANVSV-VWEPAPSVEAIRE 380
           +A V   +   APS   +RE
Sbjct: 429 QAGVDAELTRVAPSSAELRE 448


>gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
 gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 516

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 37/392 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDR 68
            A+++ G+   TSVQE  +   L+  D +VS+QTGSGKT AF L +   LL    AE  R
Sbjct: 87  HAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLHRLLNAGAAEQTR 146

Query: 69  FSPASAPLALAIAPTRELAVQVGREL--------EWLYAKT----------GVVVAVCIG 110
            +    P A+ + PTRELA QV  +         E L A+           G+ +A  +G
Sbjct: 147 VA---TPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAARGLRIATVVG 203

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G+   ++  DL+ GA +VV TPGRL D H RG+ + +   + +V+DEAD MLDLGF +D+
Sbjct: 204 GMPFGKQLFDLR-GAQLVVATPGRLLDLHSRGQ-IRLDATQVLVVDEADRMLDLGFAEDL 261

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I D++ ++ + +MFSAT +P I  LA    +   R+ +A+ +  HSDI          
Sbjct: 262 AAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQTLHWADNM 321

Query: 230 DRDNAIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
               A++ + LR      A+VF ST+       + L +     VAL G + Q  R+  LQ
Sbjct: 322 GHKQALLEHWLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVALHGAMPQAVRNRRLQ 381

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +RDG  RV +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++  I
Sbjct: 382 NVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGRAGRSGTAI-TI 440

Query: 349 PQNMQR---RAERLFR----EANVSVVWEPAP 373
            ++ +R   RA   F     EA+V V  EP P
Sbjct: 441 AEHRERGKIRAIEAFTRQPIEASVIVGLEPTP 472


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL++ GY   T +Q   +   L  +D+L  AQTG+GKT AF L + + L   
Sbjct: 8   NLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNKLSQI 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +P +AP AL + PTRELA Q+G  +            V  GGV    + R L  G 
Sbjct: 68  KGRPAP-NAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQIRALSRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  + + +  ++  VLDEAD MLD+GF  DI  I+   P KR  L+F
Sbjct: 127 DILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPAKRHTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+    +  +V +  E+     I  + + V   ++ + + N+L +   +
Sbjct: 187 SATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNVLEHESIE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +H     A+ G  SQ  R  AL   R G+ +V +ATD+AA
Sbjct: 247 QVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ +L +  E+ +HR GRT RAGR G ++
Sbjct: 307 RGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAI 346


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G +N   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 55  EALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVSVPADVEAGR 114

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P    + P AL + PTREL VQV  +L        V V    GG +   +   L+ G 
Sbjct: 115 ARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    K LN++H++ +VLDEADEMLDLGF  D+E I+   P +R+ ++F
Sbjct: 175 DVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIGMLPARRQTMLF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           SAT+  A+ +LA+ Y      +   S   E    ++I    YRA  +   D+   I  IL
Sbjct: 235 SATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSM---DKPEMIARIL 291

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  V +
Sbjct: 292 QAEGRGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLV 351

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDVAARGID+  +  VI+ +   + +  LHR+GRTGRAG  G ++  +
Sbjct: 352 CTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFV 400


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 195/357 (54%), Gaps = 15/357 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 46  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373
           + +L SN EN +HR GR+GR GRKG+++ FV  +++     R+ R  ++  +W P+P
Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDV-----RILR--DIECMWLPSP 389


>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
 gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
          Length = 508

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 194/368 (52%), Gaps = 8/368 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L     R
Sbjct: 38  EPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILQGSRAR 97

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  ++
Sbjct: 98  ---ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRGVDVL 154

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D     GL ++  K +V+DEAD MLD+GF  DIE I+      R+ L FSAT
Sbjct: 155 IATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLFFSAT 214

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++P I  LA  + ++   + ++  +   S I+    +V   D+  A+  +LR    +NAI
Sbjct: 215 MAPEIRRLADAFLRNPKEITVSRPSSVASTIETGLAIVDAKDKRRALRKLLREADMQNAI 274

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V    K L +H F   AL G+L+Q  R + L+  + G  ++ + +D+AARGI
Sbjct: 275 VFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCSDIAARGI 334

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V + +L  + E+ +HR GRTGRAGR G +      ++    E    +A   + 
Sbjct: 335 DIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAY-----SLATPDEEALAQAIEKLT 389

Query: 369 WEPAPSVE 376
            +P P +E
Sbjct: 390 GKPIPRIE 397


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 195/369 (52%), Gaps = 15/369 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P  + +DV+  AQ+G+GKT  F + L   +   N  F+   A   L
Sbjct: 104 GFEKPSVIQQLAIVPCCQRRDVIAQAQSGTGKTATFAIGLLQQI---NTDFNDCQA---L 157

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  CIGG SV   R  L  G H+ VGTPGR+ D 
Sbjct: 158 VMAPTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNREKLGQGCHVAVGTPGRVLDM 217

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IRG  L    +K  VLDEADEML  GF+  I  + +  P   ++++ SAT+   +  +  
Sbjct: 218 IRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPADVQVVLLSATMPDEVLQVTT 277

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  E      I    + V   + + + + +I        A++FC++R  V
Sbjct: 278 KFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCDIYTTLSISKAVIFCNSRQKV 337

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +  + L +  F V  + G+++QQ+R   +Q  R G +RV I+TD+ ARGID+  + +VI
Sbjct: 338 EKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRVLISTDLLARGIDIQQVSIVI 397

Query: 318 HAELSSNPENLLHRS-------GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           + ++  N EN +HR        GR+GR GR G+++  + +N +R  + +    + ++   
Sbjct: 398 NYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFVTENDKRMMKDIEEFYHTNIRQM 457

Query: 371 PAPSVEAIR 379
           PA  +E +R
Sbjct: 458 PA-DIEKVR 465


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 183/346 (52%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G +    +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 53  EALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 112

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 113 ARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    K LN+ H+KA+VLDEADEMLDLGF  D+E I++  P KR+ ++F
Sbjct: 173 DVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIINFLPVKRQTMLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +   + + + + +      V  +   D+   +  IL+  
Sbjct: 233 SATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDKPEMVSRILQAD 292

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    +VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 293 GRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 352

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAG KG ++ ++
Sbjct: 353 VAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLV 398


>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 445

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 184/343 (53%), Gaps = 10/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL    A+
Sbjct: 11  LICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G 
Sbjct: 71  ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMF
Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT SP IT+LA  +      V+    N     I  +   +  S + NA++++++     
Sbjct: 185 SATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AA
Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++
Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347


>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 514

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 140/400 (35%), Positives = 212/400 (53%), Gaps = 45/400 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL------ALAST 61
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L      A    
Sbjct: 45  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 103

Query: 62  LLAENDRF--------------SPASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
             A+  R                P + P  L + PTRELA+QV       G+ L+ L   
Sbjct: 104 TQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRTV 163

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 164 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 217

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+ ++P+ R+ ++FSAT+   I +L     +D  R+ I  + R  S  +
Sbjct: 218 LDMGFIEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEI--QQRLESRAN 275

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR      AI+F +T+    +    LA+  F+  AL G+
Sbjct: 276 IAQTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 335

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 336 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 395

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEP 371
           AGR G++V ++    Q   +R ER  R     NV   +EP
Sbjct: 396 AGRSGIAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 435


>gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 418

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 184/340 (54%), Gaps = 1/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + I  AL E GY + T +Q   +   L+  D+L  AQTG+GKT AF + +   LL E
Sbjct: 7   HIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPILQ-LLRE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      +L + PTRELA+Q+G         TG+   V  GGV  + +   L+ G 
Sbjct: 66  RKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQVNALRRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + PK+R+ L F
Sbjct: 126 DILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPKERQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+    +   +V++   +     I+ +   V   ++   +V++L+    +
Sbjct: 186 SATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHLLQNPDIR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  + L +H     A+ G  +Q  R  AL   +  + RV +ATD+AA
Sbjct: 246 TVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ DLE VI+ E+S+  E  +HR GRTGRAG  G ++
Sbjct: 306 RGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAI 345


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
 gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
          Length = 547

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  HGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 375 RTVLEGFEPDPTI 387


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 139/413 (33%), Positives = 212/413 (51%), Gaps = 16/413 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRRL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT   +I  LA+   K+ V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDSIRALARELLKEPVEITVEGAD-SAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETT 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           RA+ L  E    + W  AP   A R     +     L +D  + D+ +  D+L
Sbjct: 352 RAQALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDIL 403


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 16/376 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E GY   TS+Q+  +   L  KD+L SAQTG+GKT  F L +   L ++     
Sbjct: 18  ILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQHL-SQTPVVV 76

Query: 71  PASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               P+ AL +APTRELA QVG+ +    ++L  K+ VV     GGVS++ +   L+ G 
Sbjct: 77  KGKKPVRALILAPTRELAAQVGQNVRNYSQFLRLKSLVV----FGGVSINPQMMKLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D ++   +++S ++ +VLDEAD MLD+GF  DI  ILD  P KR+ L+F
Sbjct: 133 DILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKLPTKRQNLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA +   +   + +A  N     +      V    +   +  ++     +
Sbjct: 193 SATFSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLIHFVDKRRKAELLSYLIGSENWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R T+ L +   + +A+ G  SQ  R+ AL   + G  RV +ATD+AA
Sbjct: 253 QVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSGAIRVLVATDIAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           RG+D+  L  V++ EL +  E+ +HR GRTGRA   G++V ++    Q++    ERL ++
Sbjct: 313 RGLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLLTAIERLLKQ 372

Query: 363 ANVSVV---WEPAPSV 375
           +   +    +EP P++
Sbjct: 373 SIPRMALAGYEPDPTI 388


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 189/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++ ++ +
Sbjct: 12  IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNK-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  ++V 
Sbjct: 70  KAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + K +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK      V +++   N   + +      V  + +   ++ +++    +  +VF
Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLV 347


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 196/342 (57%), Gaps = 9/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   G+   T +Q   +   +  KD++  AQTG+GKT AFG+ L   + L+E    
Sbjct: 13  IEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPLIERVELSE---- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A   + +APTRELA+QV  EL  +    GV      GG  ++R+ + L+   HI+ 
Sbjct: 69  ---EAIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQIKALKKRPHIIS 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ + + ++H++  VLDEADEML++GF +DI+ IL       + L+FSAT+
Sbjct: 126 ATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISSPHQTLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  + +LA+ +      V + ++     +I+ + V +  + + + + N++       AIV
Sbjct: 186 SKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNLVDLQSPDLAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V    + L +  +    + G+L+Q +R++ ++  ++    + +ATDVAARG+D
Sbjct: 246 FGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIMVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +  +  V + ++  +PE+ +HR GRTGRAG KG++V F+IP+
Sbjct: 306 ITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPR 347


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 194/349 (55%), Gaps = 4/349 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   T +Q   +   L  +DVL  AQTG+GKT AFG+ L + +L  
Sbjct: 8   DLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQMLEY 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +  PA+  +  L +APTRELA Q+   L  L   + +   + +GGVS++ +   L  G
Sbjct: 68  GQK--PAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQINRLSRG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D +  K L++     +VLDEAD+MLDLGF   +  I    P+KR+ ++
Sbjct: 126 TDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEKRQTML 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  +A  Y K  VR+ +    +  + +      +A +++ + +  +L  H  
Sbjct: 186 FSATMPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKELLAKHDG 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+  + +  KVL +  F+  A+ G  SQ +R  AL+  + G   V +ATDVA
Sbjct: 246 ERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ARG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  +
Sbjct: 306 ARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEI 354


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 195/342 (57%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 193/357 (54%), Gaps = 7/357 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDR 68
           I +A+ E+GY   T +Q   + P L  +DV+ +AQTG+GKT  F L +   L    EN R
Sbjct: 29  IQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPILEILAEGIENGR 88

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHI 127
               +   AL + PTRELA QVG  +  LY K   +   +  GGV ++ +   L+ G  I
Sbjct: 89  KVKPNQARALVLTPTRELAAQVGENVA-LYGKYLPIKSTIVFGGVKINPQMMKLRGGVDI 147

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D    + +    L+ +VLDEAD MLD+GF  DI  I+   PKKR+ LMFSA
Sbjct: 148 LVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILPKKRQNLMFSA 207

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LAK+   + V + +   N   + +      V   ++   + ++++ +  +  
Sbjct: 208 TFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPVDKKEKPALLTHLIKTNKWQQV 267

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   ++  K L     +  A+ G  SQ  R+ AL   ++G  ++ +ATD+AARG
Sbjct: 268 LVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKILVATDIAARG 327

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           +D+  L  V++ +L    E+ +HR GRTGRAG +G +V ++  +   M +  ERL +
Sbjct: 328 LDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLKEIERLTK 384


>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
           'morsitans']
 gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  202 bits (515), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 205/374 (54%), Gaps = 13/374 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY+  T VQ+  +   L+ +D++ SAQTG+GKT AF L +   L   + R +PA 
Sbjct: 15  ALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQLL---DQRPAPAG 71

Query: 74  A---PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+ AL + PTRELA Q+G  +    A  G+   V  GGVS++ +   L+ G  ++V
Sbjct: 72  KQRRPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQMMKLRGGVEVLV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  + + +++S ++ +VLDEAD MLD+GF  DI  ++   P KR+ LMFSAT 
Sbjct: 132 ATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLPTKRQSLMFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I TLA +   +   V +A  N     I     +V    +   + +++  +  +  +V
Sbjct: 192 SDEIKTLANSLLDNPASVEVARRNTASEQITQFVHMVDKKRKRELLSDMIGRNNWQQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D
Sbjct: 252 FTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGSIRVLVATDIAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLFREANVS 366
           +  L  V++ EL    E+ +HR GRTGRA   G  +S+  + +  + R  ERL ++    
Sbjct: 312 IDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELGLLRDIERLLKKPIPR 371

Query: 367 VV---WEPAPSVEA 377
           +V   ++P  S++A
Sbjct: 372 IVLPGYDPDSSIKA 385


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 190/340 (55%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+   Y   T VQ  ++   L  +D++V AQTGSGKT AFG+ ++  +  E
Sbjct: 10  HVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVSDMIEWE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P AL + PTRELAVQV  ++  +     +      G     +++ +L+   
Sbjct: 70  EKK------PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKT 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI  + L+++ +K +++DEADEML+ GF D++E I+   P  R  ++F
Sbjct: 124 HVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  + +++ I S       I++  + V   ++ + + +I       
Sbjct: 184 SATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREEEKISLLKDITVVENPD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC T+ +V      L +  +    L G L Q++R + ++  + G  R  +ATDVAA
Sbjct: 244 SCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++
Sbjct: 304 RGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAI 343


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA- 72
           A++ERGY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L       SPA 
Sbjct: 15  AVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERLRTG----SPAR 70

Query: 73  -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G  ++V T
Sbjct: 71  NNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRLRGGCDVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  IL   P KR+ LMFSAT S 
Sbjct: 131 PGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQNLMFSATFSS 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK    D V V+I+  N     +      V    +   + ++++ +G    +VF 
Sbjct: 191 EIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQENGWFQVLVFS 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++  K L  +  +  A+ G  SQ  R+ AL   + G+ R  +ATD+AARG+D+ 
Sbjct: 251 RTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRALVATDIAARGLDIE 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 311 QLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLV 347


>gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 373

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 183/342 (53%), Gaps = 7/342 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +AL E GY +LT +QE  +   L+ +D+L  AQTG+GKT AF + +   +L  
Sbjct: 7   NLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPILERILQN 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N R         L + PTRELA+Q+G   +       +  AV  GGV+ +++   L+ 
Sbjct: 67  PKNKR-----QIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQLKQ 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D +    + ++ L  +VLDEAD MLD+GF  D++ IL   P +R+ L
Sbjct: 122 GVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+  +I   A +   +   V +   +     +      V   ++   ++NIL+   
Sbjct: 182 FFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVYFVDKKEKTPLLINILKDQS 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    +  K L +      A+ G  SQ  R  AL+  +  R  V IATD+
Sbjct: 242 TDRTLIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLIATDI 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+ +L  VI+ EL + PE  +HR GRTGRAG +G++V
Sbjct: 302 AARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAV 343


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 192/350 (54%), Gaps = 1/350 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +QE  +   L +KD+L  AQTG+GKT +F + +   L   
Sbjct: 7   NITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQHL-HL 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N      S   AL + PTRELA+Q+   +E     T +   V  GGV+   +   L  G 
Sbjct: 66  NKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLHKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + + +++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K+ +++ +  ++     I      V   ++   +++IL+    +
Sbjct: 186 SATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQKSEDR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  GM++    Q  +++
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQ 355


>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 411

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 186/344 (54%), Gaps = 3/344 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P    I  +L   G+   T +Q   +   ++ +DVL  AQTG+GKT AF + +   
Sbjct: 3   FDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPVIDK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    S +     + + PTRELA+Q+      +   T V      GGV    +   L
Sbjct: 63  LHKQKSS-SRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQIAKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGR+ D +    + +  +  ++LDEAD MLDLGF  DI+ ++   PK+R+
Sbjct: 122 EKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPKRRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSATI   I  LA +  ++A+R+ I+ +N    +ID+    VA+ D+   +  ++R 
Sbjct: 182 TLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHSVAFVAMDDKRFFLERVIRQ 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  +VF  T+    R    L     + + + G+  Q +R  A+   + G  ++ IAT
Sbjct: 242 NADKKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKILIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DV+ARGID+P+++ VI+ +L   PE+ +HR GRTGR  +KG++V
Sbjct: 302 DVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAV 345


>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 192/374 (51%), Gaps = 14/374 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   LR  D+L +AQTG+GKT  F L +   L         A 
Sbjct: 19  AIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPILHMLSQNKPAKRSAG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++     TG+   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQISALRKPVDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK R+ L+FSAT S  I
Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKSRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   V++   N     +     LV  + + + + +++   G    +VF  T
Sbjct: 199 RELARGVLHNPGEVSVTPRNTATELVTQTVYLVDQAHKRDLVSHLISESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA------- 363
             V++ EL + PE+ +HR GRTGRAG  G +V ++  +   + +  ERL ++        
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLKAIERLIKKTIDRKTVD 378

Query: 364 ----NVSVVWEPAP 373
                V  V EP P
Sbjct: 379 GWTPPVGAVAEPEP 392


>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
 gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
          Length = 603

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 198/373 (53%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 73  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAAQPNKVHTP 132

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 133 HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 192

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 193 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 252

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 253 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 312

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 313 VFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 372

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 373 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 432

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 433 RTVLEGFEPDPTI 445


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 192/348 (55%), Gaps = 2/348 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   T +Q   +   L  +DVL  AQTG+GKT AFG+ L + +L E
Sbjct: 8   DLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLVAQML-E 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A     L +APTRELA Q+   L  L   + +   + +GGVS++ +   L  G 
Sbjct: 67  YGRKPAAGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQIHRLSKGT 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  K L++     +VLDEAD+MLDLGF   +  I    P++R+ ++F
Sbjct: 127 DILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEERQTMLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A  Y K  VR+ +    +  + +      +A +++ + +  +L  H  +
Sbjct: 187 SATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLSAHDGE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  + +  KVL +  F+  A+ G  SQ +R  AL+  + G   V +ATDVAA
Sbjct: 247 RTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           RG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  +
Sbjct: 307 RGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEI 354


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 184/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGSRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y +   +  AV  GGV ++ + + L+ GA ++V
Sbjct: 70  RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMQRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 383

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 198/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT +  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 186/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G  N   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 15  EALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVAADVEAGR 74

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P    +AP AL + PTREL  QV  +L        V V    GG +   +   L  G 
Sbjct: 75  AKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAYEPQVEALNKGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    + L++ H+KA+VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 135 DVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVERIVTMLPAKRQTMLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--VLVALS-DRDNAIVNILRYH 242
           SAT+  A+  LA+ Y      +   S + + + +   A  V  A S D+   +  IL+  
Sbjct: 195 SATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHSMDKPELVSRILQAE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A++FC T+ + +   + L    F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 255 GRGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAGR G+++ ++
Sbjct: 315 VAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITLV 360


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 185/342 (54%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   K+   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 214/392 (54%), Gaps = 17/392 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSA
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  IT LA     +  R+ +   N     I+ R   +A S +   + +++     +  
Sbjct: 193 TFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITAGAWEQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AARG
Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE-- 362
           +D+  L  V++ EL +  E+ +HR GRTGRAGR G ++  V P  + + +  ER+ ++  
Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKI 372

Query: 363 ANVSVVWEPAPSVEA----IRERDAQRILQDP 390
           A+  ++   A +VEA    +RER   R  ++P
Sbjct: 373 ADGDLMGFDASAVEAEKPEVRERPDVRNPRNP 404


>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
 gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
          Length = 512

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +V+ EA  + G+   T +Q   +   L+ +DV+  A+TGSGKT AF + +  +LLA  
Sbjct: 86  VTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACA 145

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         L + PTRELA Q+  + + L +  GV  AV +GG+ +  +   L    H
Sbjct: 146 QRLH------TLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPH 199

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ RR  +F
Sbjct: 200 VVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLF 259

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   +D V+ +++S+      +    + +    +D  +V+IL      
Sbjct: 260 SATMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGN 319

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC T  +  R   +L       + L G++SQ +R  AL   +     V +ATDVA+
Sbjct: 320 SFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVAS 379

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 380 RGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 424


>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRF 69
           +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L    A   RF
Sbjct: 14  QAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAQGQAPTSRF 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  ++V
Sbjct: 74  G-GRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQIERIKRGVDVLV 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK ++ L+FSAT 
Sbjct: 133 ATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQSLLFSATF 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA     D   + +   N     I      V    +   +++I++ H     +V
Sbjct: 193 SDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQQHDWSQVLV 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +   + L +H  Q +AL G  SQ  R+ AL+  + G+ R  +ATD+AARGID
Sbjct: 253 FTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRALVATDIAARGID 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + DL  V++ E+ + PE+ +HR GRTGRAG++G +V ++
Sbjct: 313 IDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLV 351


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            ++   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 70  RSNQVRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FSAT 
Sbjct: 129 ATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ + + L+ GA ++V
Sbjct: 70  RANQVRALILTPTRELAAQV-QENVFMYSRHLPLNSAVVFGGVKINPQMQRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
 gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
          Length = 488

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 178/338 (52%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L  +N +  
Sbjct: 12  ILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DNGQRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QV   +        +   V  GGV V+ +   L+ G  ++V 
Sbjct: 70  KGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKLRKGCDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT S
Sbjct: 130 TPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    D V V++  EN     I+          +   +V +++    K  +VF
Sbjct: 190 AEIRELAKGLVNDPVEVSVNKENSTAVTIEQSIYPADKRKKAPMLVKLIKDGNWKQTLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   +R    L +       + G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 250 CRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLV 347


>gi|254775428|ref|ZP_05216944.1| ATP-dependent RNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 362

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/356 (37%), Positives = 187/356 (52%), Gaps = 4/356 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I +AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L   L   
Sbjct: 11  GVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVGRLSTG 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N R  PA  P  L +APTRELA Q+   LE L A  G+ V+   GGVS HR+   L+ G 
Sbjct: 71  NRR--PAR-PTGLVLAPTRELATQITATLEPLAAAAGLRVSTIFGGVSQHRQVTALKAGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +R + + +  ++  V+DEAD M DLGF   +  IL ++P   + L+F
Sbjct: 128 DIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPNDGQRLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   + +DAV  ++   N   S++ +    V  +     +V+ L   G  
Sbjct: 188 SATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGTG 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  + L E     V L G LSQ  R   L M   G ARV +ATD+AA
Sbjct: 247 RRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    +     L R
Sbjct: 307 RGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRALMR 362


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 7/342 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +++    L   D   P     AL
Sbjct: 55  GFERPSAIQQRAIVPCTKGRDVIAQAQSGTGKTATFSVSV----LQRIDTTRPECQ--AL 108

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q    LE L     V    CIGG  V  +   L+ G  ++VGTPGR+   
Sbjct: 109 ILAPTRELATQSLDVLENLGQYMDVKTMGCIGGTRVQDDMAKLEQGVQVIVGTPGRVFHM 168

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L++S+L   VLDEADEML  GF D I  I  + PK  ++++ SAT+   +  + K
Sbjct: 169 INSGALDVSNLGVFVLDEADEMLSFGFTDQIYDIFQTLPKDVQVILISATMPDDVLEVTK 228

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  E      I    V V   D +   + +I +      A++FC+TR  V
Sbjct: 229 RFMRDPIRILVKKEQLTLEGIRQFYVDVGKEDWKLETLSDIWKTITISQAVIFCNTRRKV 288

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L     QV    G+++Q ER+  ++  R G  RV I TD+ ARGID+  + LVI
Sbjct: 289 DWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRVLITTDLLARGIDVQQVSLVI 348

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           + +L SN EN LHR GR+GR GRKG+++  + ++  RR + L
Sbjct: 349 NFDLPSNRENYLHRIGRSGRFGRKGVAINFVAEDDVRRLKEL 390


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 3/332 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L     R  
Sbjct: 59  IQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR-- 116

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ 
Sbjct: 117 -ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRGVDVLIA 175

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D     GL ++  K +V+DEAD MLD+GF  DIE I+      R+ L FSAT++
Sbjct: 176 TPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLFFSATMA 235

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA  +  +   + ++  +   S I+   V+V   D+  A+  +LR    +NAI+F
Sbjct: 236 PEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRALRKLLRESDMQNAIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V    K L +H F   AL G+L Q  R + L+  + G  ++ + +D+AARGID+
Sbjct: 296 CNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCSDIAARGIDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             L  V + +L  + E+ +HR GRTGRAGR G
Sbjct: 356 GGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTG 387


>gi|332767614|gb|EGJ97807.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
           flexneri 2930-71]
          Length = 430

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 198/365 (54%), Gaps = 14/365 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   + A   +        AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQ------ALVLCP 54

Query: 83  TRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           TRELA QV  EL  L  +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLC-GGQPFGMQRDSLQHAPHIIVATPGRLLDHLQ 113

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   
Sbjct: 114 KGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRV 173

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           Q+D + + I S +     I+ +    +   +   +  +L  H   + +VFC+T+      
Sbjct: 174 QRDPLAIEIDSTD-ALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAV 232

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L E     ++L G+L Q  R   L    +G ARV +ATDVAARG+D+  LELV++ E
Sbjct: 233 CDALNEVEQSALSLHGDLEQ--RDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFE 290

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           L+ +PE  +HR GRT RAG  G+++ F  P+  Q RA  +     + + W+  P+  +I 
Sbjct: 291 LAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQ-RANIISDMLQIKLNWQTPPANSSIV 349

Query: 380 ERDAQ 384
             +A+
Sbjct: 350 TLEAE 354


>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 517

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +      S 
Sbjct: 15  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMPPVAAASG 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G  IVV T
Sbjct: 75  KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA N       + +A  N     +  +   V    +   + ++++ H     +VF 
Sbjct: 195 EIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L++     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+ 
Sbjct: 255 RTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351


>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 415

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/369 (36%), Positives = 197/369 (53%), Gaps = 10/369 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +  G+   T VQ A +   LR  DVL SAQTGSGKT AF L L   L A+       
Sbjct: 14  QAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLLQRLQADAQ----- 68

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +AP    AL + PTRELA QVG  +  L       V VAV  GGVS++ +   L+ GA +
Sbjct: 69  NAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMMGLRGGADV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +    L +  ++ +VLDEAD +LDLGF ++++ IL   P +R+ L+FSA
Sbjct: 129 VVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVRRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +PA+  LA+    + VRV +         I  RA  V    R   + ++++ H     
Sbjct: 189 TFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQRRTQLLRHLVQEHQWSRV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+ +     + L +         G LSQ  R+  LQ  +D R +V + TD+AARG
Sbjct: 249 MVFVATQYAAEHVAEKLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQVVVTTDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L  V++ +L  + ++ +HR GRTGRAG  G++V  +    +     + +  ++S+
Sbjct: 309 IDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHFRLIEKRQHLSL 368

Query: 368 VWEPAPSVE 376
             E  P  E
Sbjct: 369 PREVVPGFE 377


>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 557

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 7/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I EAL+ +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L    L   +   
Sbjct: 77  ICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 136

Query: 70  --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              PAS +P  L I PTRELA QV  EL    AK  V +    GG +   +  DL+ GA 
Sbjct: 137 DEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 196

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL  +   R  ++FS
Sbjct: 197 VVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 256

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           AT+  A+ TLA+ Y      +       +   +     +V  +   N    +  IL+  G
Sbjct: 257 ATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVARILQAEG 316

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+ +  V +ATDV
Sbjct: 317 RGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNDKVDVLVATDV 376

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 377 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 421


>gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
 gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
          Length = 474

 Score =  202 bits (515), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 192/353 (54%), Gaps = 6/353 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+ +   + +A+    Y   T VQE ++   L  +D LV A+TGSGKT A+ L +    
Sbjct: 6   VFDLLEADLRQAVEALHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALPVCQQC 65

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E DR      P AL +APTRELA Q+ +E++       +  A  +G   +  ++  L+
Sbjct: 66  HFE-DRL-----PQALILAPTRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQLK 119

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ DHI    L++S LK +VLDEAD+M  LG  + +  IL+  P   + 
Sbjct: 120 QRVQIVIGTPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQT 179

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+SP I  LA+    D + + I S  + + +I   ++ V+ +++   ++++    
Sbjct: 180 CLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHVFSTI 239

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A +AIVFC  + +     + L +      AL G + Q +R   L+  R G+ R+  ATD
Sbjct: 240 QAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           VAARG+D+  L L++H +L  N E+ +HR GR GR  + G SV ++  + + R
Sbjct: 300 VAARGLDIDGLSLIVHWDLPLNLESFIHRCGRCGRIDQLGTSVALLTPSQKSR 352


>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
 gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
          Length = 507

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 200/356 (56%), Gaps = 10/356 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 64  ETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLENPQR 123

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI+
Sbjct: 124 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 177

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSA
Sbjct: 178 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 237

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 238 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSF 297

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 298 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 357

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 358 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQRIEHLL 413


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/334 (38%), Positives = 183/334 (54%), Gaps = 13/334 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + GY  +  +Q   L   +  KDV+  A+TGSGKT AF L L   L  +  R    
Sbjct: 21  QNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHHLDVKRFRVQ-- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                L + PTRELA QV +E+  L  A   + V    GG+    +   L++GAHIVVGT
Sbjct: 79  ----HLVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEHGAHIVVGT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ +HIR   L +  +   VLDEAD MLD+GF+D +E I+++ PK+R+ L+FSAT   
Sbjct: 135 PGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTLLFSATYPE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248
            I  LA       VRV +  E+  HS I  + +   L D   R  A+  +L+    +++I
Sbjct: 195 NIEKLAAWVTNKPVRVEV-QESDVHSQI--KQLFYRLQDNKQRMTALSLLLKKEKPESSI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+         L    F  VAL G+L Q++R   L    +  A + +ATDVAARG+
Sbjct: 252 VFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVATDVAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+  ++ V +  L+ +PE  +HR GRTGR  +KG
Sbjct: 312 DIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKG 345


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 8/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           GY N + VQE ++   L  KD++V +QTGSGKT AFG+ L   +   EN        P  
Sbjct: 22  GYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCEKVDWNEN-------IPQI 74

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELAVQV  ++  +     +      G   +  + R L+   H+VVGTPGR+ D
Sbjct: 75  LVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQKTHVVVGTPGRILD 134

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    LN++ +K  V+DEADEML++GF   +E I+   PKK+  ++FSATI   I  L 
Sbjct: 135 HIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFSATIPEEIKVLC 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             Y    V ++I ++   + +ID+        ++   + +IL     +  ++F  T+ +V
Sbjct: 195 DKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPETVVIFAKTKENV 254

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    + V  + G + Q+ER + +   R G  R+ ++TD+A+RGID+  +  VI
Sbjct: 255 DTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASRGIDVKGITHVI 314

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L    E  +HR GRTGRAG KG ++
Sbjct: 315 NYDLPVEKEAYVHRIGRTGRAGEKGKAI 342


>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 192/352 (54%), Gaps = 6/352 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L   +   S   
Sbjct: 16  AVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQRL--SDTPVSSGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QVG  +        +  A+  GGV ++ +   L+ G  I+V TP
Sbjct: 74  RPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLRKGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K +++S ++ ++LDEAD MLD+GF  DI  +L   PKKR+ L+FSAT S  
Sbjct: 134 GRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQNLLFSATFSDD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +       + +A  N     ++    L+  S +   + +++     +  +VF  
Sbjct: 194 IKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHMIGSQNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +   +  A+ G  +Q  R+ AL   + GRARV +ATD+AARG+D+  
Sbjct: 254 TKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361
           L  V++ EL   PE+ +HR GRTGRAGR G +V ++    +   R  ERL +
Sbjct: 314 LPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRDIERLLK 365


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 190/358 (53%), Gaps = 8/358 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RF 69
           I +AL+E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L +E   + 
Sbjct: 13  IMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHRLASETPAKR 72

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +P      L ++PTRELA Q+                V  GGV++ R+ R L NG  ++V
Sbjct: 73  APRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQERALANGIDVLV 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  + L++  ++ +VLDEAD+MLDLGF   ++ I+   PK R+ L FSAT+
Sbjct: 133 ATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSATM 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I TLA  Y +D V+V +         ++ R + V+   +   +  ILR       +V
Sbjct: 193 PKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGTILRDESIDRVLV 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  + L +      A+ G  SQ +R  AL   R G  RV +ATD+AARGID
Sbjct: 253 FTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRVLVATDIAARGID 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFRE 362
           +  +  V++ +L + PE  +HR GRT RAG  G+++     N + RA     ERL R+
Sbjct: 313 VEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFC--NEEERAYLRDIERLTRQ 368


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 185/340 (54%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T +QE  +   L  +DVL  AQTG+GKT AF L +   L +   R   A
Sbjct: 15  QAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDRLASGRAR---A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ +APTRELA QV          T +   + IGGVS+  +   L  G  +++ TP
Sbjct: 72  RMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQIAALNKGVDVLIATP 131

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L ++ ++ +V+DEAD MLD+GF  DIE I   +P +R+ L FSAT+ P
Sbjct: 132 GRLLDLFDRGKML-LTGVELMVVDEADRMLDMGFIPDIERIFKLTPPRRQTLFFSATMPP 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248
            IT L + + KD  R+ +A        I      +  SD   +  A+  ++     +N I
Sbjct: 191 EITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTALRALVERGDVQNGI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ ++ V    K L  H F    + G+L Q  R   L   R G  ++ +A+DVAARG+
Sbjct: 251 VFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGELKLLVASDVAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P +  V + ++  + ++ +HR GRTGRAGR G +  ++
Sbjct: 311 DIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIV 350


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 194/369 (52%), Gaps = 31/369 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L  TL+ E
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLLTLIEE 456

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D+      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G 
Sbjct: 457 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 511

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P        
Sbjct: 512 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 571

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  +
Sbjct: 572 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 631

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +  L++ S++   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 632 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 691

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG
Sbjct: 692 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 751

Query: 340 RKGMSVFVI 348
           + G+++  +
Sbjct: 752 KSGVAITFL 760


>gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 400

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 206/374 (55%), Gaps = 22/374 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPASAPLAL 78
           Y + T +QE  +   L +KD+L  AQTG+GKT AF + + S +  E  D+ S       L
Sbjct: 21  YQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPILSLIREEGGDQLS------TL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVVGTPGRL 135
            + PTRELA Q+  ++E L    GV      GG    +  ++R  L  GA I++ TPGRL
Sbjct: 75  ILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQQRTALIEGADIIIATPGRL 134

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
             H++   +    +K +VLDEAD+MLD+GF DDI FI+   PK+R+ LMFSAT+ P I T
Sbjct: 135 LAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHLPKERQTLMFSATMPPKIRT 194

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            A+N  K+   +++ S ++    ID R  + A   +   + ++L     +  I+F S R+
Sbjct: 195 FARNILKNPKEISL-SVSKPAEKIDQRFYMAADEQKLALLNHLLSPFEGQKIIIFTSQRS 253

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            + +  K L+ +  +   +S ++ Q ER  AL+  + G+  + +ATDV +RGID+ +L L
Sbjct: 254 MIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFNILVATDVLSRGIDISNLNL 313

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-----LFREANVSVVWE 370
           V++ ++  + E+ +HR GRT RA  +G+S+  + +   R+A +     L +E  V  + E
Sbjct: 314 VVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEK-DRKAVKDIEALLEKEVEVQRITE 372

Query: 371 -----PAPSVEAIR 379
                PAP  +  +
Sbjct: 373 NLGLGPAPEFKVYK 386


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 192/346 (55%), Gaps = 10/346 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GYV+ T +Q+  +   L  KDVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +++DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGA---KNAI 248
             + + +  +  ++ ++        +    V       ++   +  ++R  GA   KNAI
Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLIR--GATDLKNAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   K L  H F V AL G++ Q  R+ AL+  R G   + +A+DVAARG+
Sbjct: 250 IFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPILVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           D+P++  V + ++  +P++ +HR GRTGRAGR G +V ++  + Q+
Sbjct: 310 DIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQK 355


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY   + +Q+  +   L  KDV+ +AQTG+GKT  F L +   L  +N++  
Sbjct: 12  ILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DNNQRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA Q+   +        +   V  GGV ++ +   L+ G  ++V 
Sbjct: 70  KGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKLRKGCDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + K +    L+ +VLDEAD MLD+GF  DI  IL+  PKKR+ L+FSAT S
Sbjct: 130 TPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    D V +++  +N     ++          +   +V ++     +  +VF
Sbjct: 190 AEIRQLAKGLVNDPVEISVTPQNSTAVTVEQSVYPADKRQKAPMLVELITQGKWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   +R  + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 250 CRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ +L +  E+ +HR GRTGRAG  G +  ++
Sbjct: 310 PQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLV 347


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 203/371 (54%), Gaps = 10/371 (2%)

Query: 1   MKI--FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MKI  FEN  + + I +AL   G+   + VQ+ ++   L +KD++V +QTGSGKT +FG+
Sbjct: 1   MKIDKFENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L   +  E ++        AL + PTRELA+QV  ++  +     V  A   G    + 
Sbjct: 61  PLCELVNVEENKVK------ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+   HIV GTPGR+ DHI    L+I+ +  V++DEAD+ML++GF D I  +LD  
Sbjct: 115 QIRELKQRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ +   +FSATI   I  L  NY  +   +NI S+      I  +   V   ++   ++
Sbjct: 175 PQSKNTALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L     ++AI+FC+T+ SV   + +L +    V  L G++ Q++R   ++  ++   +
Sbjct: 235 KSLYAFTDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGI +  +  V + E+    E+ +HR GR+GR  +KG+++ ++ +  +R  
Sbjct: 295 VLVATDVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFL 354

Query: 357 ERLFREANVSV 367
             +    N S+
Sbjct: 355 NEIEEYINYSI 365


>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
           EO147]
          Length = 395

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 201/379 (53%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +     T  AEN    
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--G 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   PKKR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     +  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE +  
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIAGFEPDPNAKPEPIQRR 391


>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 564

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L    A   
Sbjct: 12  ILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAQGQAPTS 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           RF       AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  +
Sbjct: 72  RFG-GRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQIERIKRGVDV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK ++ L+FSA
Sbjct: 131 LVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQSLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA     D   + +   N     I      V    +   +++I++ H     
Sbjct: 191 TFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L +H  Q +AL G  SQ  R+ AL+  + G+ R  +ATD+AARG
Sbjct: 251 LVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRALVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ DL  V++ E+ + PE+ +HR GRTGRAG++G +V ++
Sbjct: 311 IDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLV 351


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 4/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + + LS    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +  ++  +N
Sbjct: 10  IAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPIIQSV-QQN 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     AP AL + PTRELA QV   L    A T + +    GG S+  +++ L+ GA 
Sbjct: 69  KR---DGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKLEEGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    + I+    +VLDEAD MLD+GF  D++ IL   P+ ++ ++FS
Sbjct: 126 ILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQTMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       + V ++  N    ++      V    +   +  ++     + 
Sbjct: 186 ATFEERIKTIAYKLMDTPIEVEVSPANTTAENVKQMVYPVDKKRKRELLAYLIGSRNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  IATDVAAR
Sbjct: 246 VLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+  LE V++ +L    E+ +HR GRTGRAG+ G++V ++  +
Sbjct: 306 GLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHD 350


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 193/351 (54%), Gaps = 20/351 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +++DEAD MLD+GF  DIE +    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVNILRY-HG 243
             + + +  +  ++ +       S     AV VA S         ++   + +++R    
Sbjct: 192 RRVTETFLHNPEKIEV-------SKPASTAVTVAQSQVACGREPHEKRETLRSLIRAATD 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   + +A+DV
Sbjct: 245 LQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+
Sbjct: 305 AARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQK 355


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 194/379 (51%), Gaps = 15/379 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   + P L  KD++  AQTG+GKT AF L +   +  + +      A  AL
Sbjct: 22  GFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLPILEQIDIDTN------AVQAL 75

Query: 79  AIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            + PTRELA+QV   +            K  + V    GG S+ R+ + LQ G HIVVGT
Sbjct: 76  ILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIERQSQRLQKGVHIVVGT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    L + HLK +VLDEADEML +GF  D+E IL+++P +R+   FSAT+  
Sbjct: 136 PGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEAAPAERQTAFFSATMDY 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
           +I  L   Y +  V V +A +      I     ++     +  A+  IL     + A++F
Sbjct: 196 SIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSKGKALQPILELEDPEAALIF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR + +  T  L      V    G L+Q +R   L   R+ + R  +ATD+AARG+D+
Sbjct: 256 VRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQQVRWVVATDIAARGLDV 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  VI+ +L  + ++ +HR GRTGRAGR+G ++ +I    +R+   + R     +   
Sbjct: 316 DHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVDKRKLRLIERHLRQRLNTR 375

Query: 371 PAPSVEAIRERDAQRILQD 389
             P    I  R  Q+ LQD
Sbjct: 376 SIPKRSQIEARQLQK-LQD 393


>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416 [Aureococcus anophagefferens]
          Length = 435

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 196/353 (55%), Gaps = 11/353 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+   T +Q+A +   L  +DV+  A+TGSGKT AFGL +   LL +  R    
Sbjct: 9   DAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLEKPSRL--- 65

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                +A+APTRELAVQ+    + L A  G+     +GGV +  +   L    H+VV TP
Sbjct: 66  ---FGVALAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAKLPHVVVATP 122

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS 190
           GRL DH+   KG ++   K +V+DEAD ML + F  +++ I+ + P++ R  ++FSAT++
Sbjct: 123 GRLVDHLENTKGFSLRTCKCLVMDEADRMLSMDFEKELDAIVGAIPREGRCSMLFSATMT 182

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L +      V+V +  +      +D R + V    ++  +  +L       A+VF
Sbjct: 183 SKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKHKECYLAAVLDARRGATALVF 242

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T A  +R T +L    F    L G+++Q +R  AL   + G A + +ATDVAARG+D+
Sbjct: 243 CATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATILVATDVAARGLDI 302

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           P ++LV++ ++ ++ +  +HR GRT RAGRKG ++  + Q    + +R E L 
Sbjct: 303 PAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLI 355


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 218/418 (52%), Gaps = 17/418 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q   +   L   D++  +QTG+GKT A+ L L   +  +N      
Sbjct: 16  QHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLERMDTKNPNVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   ++       + +    GG S+ R+ R L+ G  IVVGTP
Sbjct: 74  ----ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKGVQIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +  K L++  L  VVLDEADEML +GF DD++ IL +SP  R+   FSAT+   
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPRE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  L  N+ K  + V ++      + I+ +  L+     +   +  +L     ++AI+F 
Sbjct: 190 IRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQPLLEIEPLESAIIFV 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ ++ +ATD+AARG+D+ 
Sbjct: 250 RTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVV 368
           +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +   I + + R+ E+  R+   S  
Sbjct: 310 NLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLRQRLES-- 367

Query: 369 WEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             P PS   VEA R    Q  L++ L  + +      +V  L  ++DP+ IAA  L++
Sbjct: 368 -SPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDPQAIAAAALQM 423


>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
 gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica]
          Length = 480

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E   E  +   T +Q   +   L  +D++  AQTGSGKT AF + +  +L  EN +  
Sbjct: 75  ICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLY-ENPQ-- 131

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               PL  + +APTRELA Q+    E L +  G+  AV +GG+++  +   L    H++V
Sbjct: 132 ----PLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIV 187

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++R   +FSAT
Sbjct: 188 ATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNTYLFSAT 247

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +    D VRV ++++ +   ++    V      +D  +V ++  +   + I
Sbjct: 248 MTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYLVSENAGNSMI 307

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T++   R + +L    +  + L G+LSQ  R  AL   + G   + IATDVA+RG+
Sbjct: 308 IFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNILIATDVASRGL 367

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P ++LVI+ ++ S+ ++ +HR GRT RAGR G SV ++ Q
Sbjct: 368 DIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQ 409


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 196/341 (57%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A    L ST + E 
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEG 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ L  G  
Sbjct: 80  RQIN---QPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKVLDQGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+    P   +R  ++
Sbjct: 137 ILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  D V+V+IA + +   +I       +  D+   ++ ++     
Sbjct: 197 FSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTLIEEDWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATDVA
Sbjct: 257 EKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+S+
Sbjct: 317 ARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSI 357


>gi|296107675|ref|YP_003619376.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
 gi|295649577|gb|ADG25424.1| ATP-independent RNA helicase DbpA [Legionella pneumophila 2300/99
           Alcoy]
          Length = 435

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 197/335 (58%), Gaps = 10/335 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   L   LR +D++  A+TGSGKT AF L L + L     + S   A  AL + P
Sbjct: 1   MTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLNNL-----KIS-FFAVQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV + +  L      V  + + GG+ +  +   L++GAHI+VGTPGR+  H++ 
Sbjct: 55  TRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLGSLRHGAHIIVGTPGRILKHLKN 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+R+ L+FSAT    I  L+K + 
Sbjct: 115 ASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQRQTLLFSATYPEEIKRLSKQFM 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASVSRF 260
           KD   V++ +   +  DI+     V+   +   ++ ++L ++   + ++FC+T+      
Sbjct: 175 KDPKEVHVVTPPEE-IDIEQHFYEVSRQAQKFPLLKSLLLHYRPVSVLIFCNTKQQTVEV 233

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T  L    F  +AL+G++ Q ER  A+    +    + +ATDVAARG+D+ +L  VI+ +
Sbjct: 234 TDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILVATDVAARGLDIKELSAVINFD 293

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           L+ + +  +HR GRTGRAG KG+++  V P + QR
Sbjct: 294 LAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQR 328


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 187/344 (54%), Gaps = 11/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   +  + +R  P +
Sbjct: 24  ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81

Query: 74  A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126
             P AL + PTREL +QV  +L    ++L A     + V    GG     +   LQ G  
Sbjct: 82  GIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEPQIEALQKGVD 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P KR+ ++FS
Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201

Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   I TLA+ +  Q   +R      +  H   +  A      D+   +  IL+  G 
Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVEMVARILQAEGR 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R+G   V +ATDVA
Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365


>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 518

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L    +  +PA+
Sbjct: 15  AVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRL----NSMAPAA 70

Query: 74  APL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IVV
Sbjct: 71  GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT 
Sbjct: 131 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 191 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHSWFQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID
Sbjct: 251 FTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 349


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            ++   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 70  RSNQVRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FSAT 
Sbjct: 129 ATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 187/344 (54%), Gaps = 11/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   +  + +R  P +
Sbjct: 24  ALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLHRITTDTER--PLT 81

Query: 74  A-PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAH 126
             P AL + PTREL +QV  +L    ++L A     + V    GG     +   LQ G  
Sbjct: 82  GIPRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPYEPQIEALQKGVD 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P KR+ ++FS
Sbjct: 142 VVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILKQIPAKRQAMLFS 201

Query: 187 ATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   I TLA+ +  Q   +R      +  H   +  A      D+   +  IL+  G 
Sbjct: 202 ATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKVEMVARILQAEGR 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R+G   V +ATDVA
Sbjct: 262 GATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRNGDVDVLVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 322 ARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 365


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 188/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   LL++ +R  
Sbjct: 12  ILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE-LLSKGERAQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV   +        +  AV  GGVS+  +   L+NG  I+V 
Sbjct: 71  RGQV-RALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAALRNGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + K ++ S L+ +VLDEAD MLD+GF  DI+ +L   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V  + +  A++ +++ +  K  +VF
Sbjct: 190 NEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIELIKTNDWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L     +  A+ G  SQ  R+ AL   + G  +V +ATD+AARGID+
Sbjct: 250 SRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLV 347


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL    A+
Sbjct: 11  LICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G 
Sbjct: 71  ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMF
Sbjct: 125 EILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT SP I  LA ++  +   V+    N     I  +   +  S + NA++++++     
Sbjct: 185 SATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLH 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AA
Sbjct: 245 QVLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++
Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLV 347


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 191/334 (57%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+  GY   T +QE  +   L ++D+L +AQTG+GKT AF + +   L  E+ + +
Sbjct: 12  ILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPILDLLCREHGQST 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +    AL ++PTRELA+Q+    +       +   V  GGVS   +   L+ G  I+V 
Sbjct: 72  GSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVSRLREGVDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  + +++SH+   VLDEAD MLD+GF  D+  +++  P+ R+ L+FSAT+ 
Sbjct: 132 TPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQNRQTLLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA    K+  +V++A  +     ++ +   V   ++ + +V++L+    ++ +VF
Sbjct: 192 PDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLKTADMESVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  + L +      A+ G  SQ  R  AL+  +  +  V +ATD+AARGID+
Sbjct: 252 SRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHVLVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            +L  VI+ +L + PE  +HR GRTGRAG+ GM+
Sbjct: 312 TELSHVINYDLPNEPETYVHRIGRTGRAGQSGMA 345


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 212/418 (50%), Gaps = 18/418 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL +   L    D   
Sbjct: 12  ILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPILQKL----DLDK 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L+    I+VG
Sbjct: 68  QEQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIRALKKVPEILVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  + + L+FSAT+ 
Sbjct: 128 TPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENRDQTLLFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + +  D   V I ++      ID   V V  +++ + +  ++       A+VF
Sbjct: 188 KPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLIDVENPDLAVVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +ATDVAARG+D+
Sbjct: 248 GRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM--QRRAERLFREANVSV 367
             +  V + ++  +P++ +H   R GRAG+ GMSV FV P  +   R  E L ++    +
Sbjct: 308 SGVTHVYNYDIPQDPDSYVH---RIGRAGKSGMSVTFVTPNEIGYMRTIEDLTKKKMSPL 364

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---LLAKHDPEKIAAGFLR 422
              P    +A   +  Q +L+     D + GD  K  D    LL  +  E IAA  L+
Sbjct: 365 --RPPTDAQAFAGQMKQAVLK---VDDLLSGDLSKYDDAAEKLLENYSAEDIAAALLK 417


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 187/352 (53%), Gaps = 8/352 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ I EALS +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L    L
Sbjct: 75  FDVEPE-ICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTL 133

Query: 64  AENDRF---SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              +      PAS +P AL I PTRELA QV  EL    AK  V +    GG +   +  
Sbjct: 134 GPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIE 193

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ GA +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL  +   
Sbjct: 194 DLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRTD 253

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           R  ++FSAT+  A+  LA+ Y      +       +   +     +V  +   N    + 
Sbjct: 254 RHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVS 313

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+ +  
Sbjct: 314 RILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRNSKVD 373

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 374 VLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425


>gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 456

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 196/342 (57%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +++ G+ + T +QE  L P L  KDV   AQTG+GKT AF ++L + LL +
Sbjct: 7   NLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLFTRLLNQ 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL +APTREL VQ+ ++ + L   TG  +    GGV   +++  L+ G 
Sbjct: 67  -EKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKNALKEGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IV+GTPGRL D+++ K  ++ +++A+V+DEAD M D+GF  D+ FIL   P    R+ L
Sbjct: 126 DIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPFDARQNL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT++  +  LA  +     +V +  E      ++     VA  ++   ++ +LR  G
Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVARKEKFPLLLGLLRKKG 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +T+         L  + F    +SG++ Q++R   L+  ++G+  + IATDV
Sbjct: 246 MDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKLPIMIATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 193/350 (55%), Gaps = 15/350 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAEND 67
           I +AL ++G  +   +Q   L   LR  D++  A+TG+GKT+ FG+ +    + +  E  
Sbjct: 47  IVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPMLENTAGIDEEGW 106

Query: 68  RFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              P  A   P  L I PTRELA QV  EL    A+  + +    GG +   ++  L+ G
Sbjct: 107 ESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRAYEPQQEALKEG 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGRL D ++ + L++++++ VVLDEADEMLDLGF +D+E IL S+P  R  ++
Sbjct: 167 AEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKILASTPSNRHTML 226

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNI 238
           FSAT+   +  +A+ Y      +  A  +      +    + YR   +   ++   +  I
Sbjct: 227 FSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHAL---NKSEVLARI 283

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    IVF  T+ + +R  + L E  F   AL G+L Q  R  AL+  R+G+  V 
Sbjct: 284 LQAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAFRNGKVDVL 343

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G +V  +
Sbjct: 344 VATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFV 393


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 13/340 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE G      +Q   L   LR +DV+  A+TG+GKT+ FG+ L   L+   D      
Sbjct: 37  ALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQRLVTPGD-----G 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL +QV ++L       GV +    GG     + + L++G  +V+GTPG
Sbjct: 92  TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQSLRSGVDVVIGTPG 151

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + L +  +  +VLDEADEMLDLGF  DIE IL   P+ R+ ++FSAT+   I
Sbjct: 152 RLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDRQTMLFSATMPGPI 211

Query: 194 TTLAKNY--QKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            TLA+ +  Q   +R         H   +   YRA  +   D+   I  +L+  G    +
Sbjct: 212 LTLARTFLRQPTHIRAEAGETGAIHERTTQFVYRAHSL---DKPELIAKVLQAEGRGLTM 268

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  + +ATDVAARGI
Sbjct: 269 IFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAARGI 328

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  +  VI+ ++  + +  +HR GRTGRAGR G+++ ++
Sbjct: 329 DVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLV 368


>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 504

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +V+ EA +   +   T +Q   +   L+ KDV+  A+TGSGKT AF L +   LLA  
Sbjct: 88  LAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLHDLLATK 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL +APTRELA Q+ +    L +  G+  AV +GG+ +  +   L    H
Sbjct: 148 GK----KEFFALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIALAKKPH 203

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG ++  L+ +++DEAD ML++ +  +++ IL   P++RR  +F
Sbjct: 204 VLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRERRTFLF 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   +D V+V + S+ +    +  R + V    +D  ++ ++      
Sbjct: 264 SATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVPQKFKDCYLIYLMNQLRGN 323

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FCST  +V + T VL +  F  V L G++SQ +R  AL         + +ATDVA+
Sbjct: 324 SFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTILVATDVAS 383

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ +  Q      +R+  EA +
Sbjct: 384 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQRI--EALI 441

Query: 366 SVVWEPAPS----VEAIRER--DAQR 385
               E  P+    V  + ER  DAQR
Sbjct: 442 GKKMEEYPTESSQVLQLLERVSDAQR 467


>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
          Length = 443

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 194/342 (56%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +++ G+ + T +QE  L   L  KDV   AQTG+GKT AF ++L + LL  
Sbjct: 7   NLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTKLL-R 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + R      P A+ +APTREL VQ+ ++ + L A  G  +    GGV   +++  L+ GA
Sbjct: 66  SGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            +VVGTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   P   KR+ L
Sbjct: 126 DVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYDKRQNL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT++  +  LA  +     +V +  E      ++     V   ++   ++ +LR  G
Sbjct: 186 MFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLRKEG 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+       + L  + F    +SG++ Q++R   L+  + G+  + IATDV
Sbjct: 246 MERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPIMIATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 306 ASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 347


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 181/345 (52%), Gaps = 4/345 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +   L+  GY + T++Q+  +   L  KDV+ +AQTG+GKT AF L +   LL
Sbjct: 6   FSLLHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLL 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +     A   L + PTRELA QV  ++      T +      GG +++ ++  L  
Sbjct: 66  ERGVK----GAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTK 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+VGTPGRL DH+    L ++ L  ++LDEAD MLD+GF  DI+ ++   PK R+ L
Sbjct: 122 KPEIIVGTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT    +  LA     + VR+ +++ N     ++     V    +   +  ++    
Sbjct: 182 FFSATYPKQVVDLAYRLLSNPVRIEVSTANSTAETVNQLVHPVDKKRKRELLSYLIGSRN 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  TR S       L     +  A+ GE +Q  R+  L+  + G  RV +ATDV
Sbjct: 242 LQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+P L+ V + EL   PE+ +HR GRTGRAG+ GM++ ++
Sbjct: 302 AARGLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLV 346


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 187/352 (53%), Gaps = 10/352 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +        +R  P   
Sbjct: 19  LENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPNKR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA+QV   +      + + V    GG S+ R+   L+ G H+VVGTPG
Sbjct: 72  AVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +    L +  +K  VLDEADEML +GF DD+  IL  +P++R+  +FSAT+ P+I
Sbjct: 132 RVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQTALFSATMPPSI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252
             L   +    V V +       + I+  A L+     +  A+  IL     + A++F  
Sbjct: 192 RQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  
Sbjct: 252 TRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR ++ F   N
Sbjct: 312 LSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 362


>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +     T  AEN    
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAENR--G 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   PKKR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     +  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE +  
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372

Query: 367 VV--WEPAPSVE 376
           V+  +EP P+ +
Sbjct: 373 VIAGFEPDPNAK 384


>gi|313836106|gb|EFS73820.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314929641|gb|EFS93472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|314970583|gb|EFT14681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 476

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 194/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G      +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAA 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E+ R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDKR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P+  + 
Sbjct: 140 KGVDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L K Y  D V   + S+    S + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L        AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V +I  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 198/348 (56%), Gaps = 10/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359


>gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
 gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
          Length = 538

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 191/346 (55%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EA     +   T +QE  +   L+ +DV+  A+TGSGKT AF L +  +LL + 
Sbjct: 117 IVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLLEKP 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L +APTRELA Q+G+  E L A   +  AV +GG+ +  +   L    H
Sbjct: 177 QPL------FGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQSTALGKKPH 230

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV TPGRL DH+ + KG ++  LK +V+DEAD +LDL F   ++ IL   P++RR  +F
Sbjct: 231 IVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPRERRTFLF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+S  + +L +   +D ++V+++S + +  S +    + +    +D  ++ +      
Sbjct: 291 SATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIYLANEFAG 350

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T     R + +L    F  + L G+LSQ  R  AL   +     + +ATDVA
Sbjct: 351 KTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVA 410

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P+++LVI+ ++  +    +HR GRT RAGR G ++ +I Q
Sbjct: 411 ARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQ 456


>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
          Length = 392

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/381 (33%), Positives = 210/381 (55%), Gaps = 11/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   I + I +++ E G+   T +QE  ++  L  KDV+  A TGSGKT+AF    
Sbjct: 1   MKSFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAF---- 56

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A+ ++ + ++    +    L + PTRELA QV   L        + +    GGVS++ + 
Sbjct: 57  AADIIEKTEK---GTGIRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+  A +VVGTPGR+ DHI  + LN+S +  +VLDEAD MLD+GF  D++ I+   P+
Sbjct: 114 TQLRR-ADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPR 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATIS  IT LA+ YQKD + V+ A      S +      V  + + + +V++
Sbjct: 173 NRQTLLFSATISREITVLARKYQKDPISVS-AEAYVDPSKLTQLYYDVPDNLKFSLLVHL 231

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L++  ++  +VFC+TR +       L       +A+ G L+Q +R   ++       RV 
Sbjct: 232 LKHEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRVL 291

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P +  + + ++    ++ +HR GRT RAG+ G+++ ++         R
Sbjct: 292 VCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRDYDSFRR 351

Query: 359 LFREANVSVVWEPAPSVEAIR 379
           + +   V++  E  P V+ +R
Sbjct: 352 VMKSNEVTITEEKLPDVKKVR 372


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 185/345 (53%), Gaps = 4/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + + LS    V  T VQE  + P L  KD+L +AQTG+GKT AFGL +  ++  + 
Sbjct: 14  IEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPIIQSVQQKK 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  AP AL + PTRELA QV   L    A T + +    GG S+  +++ L+ GA 
Sbjct: 74  RN----GAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKLEEGAD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+    + I+    +VLDEAD MLD+GF  D++ IL   P+ ++ ++FS
Sbjct: 130 ILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQTMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I T+A       V V ++  N     +      V    +   +  ++     + 
Sbjct: 190 ATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 250 VLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALIATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+ +LE V++ ++    E+ +HR GRTGRA + G++V ++ ++
Sbjct: 310 GLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRD 354


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 191/368 (51%), Gaps = 12/368 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP 71
            L   GY   T +Q   +   LR  D+L  AQTG+GKT +F L +   L ++N  D + P
Sbjct: 18  TLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIEKL-SKNPIDGYRP 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A   L +APTRELA+QV           G+ V    GGV V  + + L+ G  I+V T
Sbjct: 77  VRA---LVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKRGTDILVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +R K +++  L+ +VLDEAD MLDLGF D I+ I+D +   R+ L+F+AT   
Sbjct: 134 PGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFTATADE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           ++  LA+ Y  +  ++ +   N     I   A  V    + + +  ++        +VF 
Sbjct: 194 SVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLITEGKWGQTLVFV 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V   T+ L +      A+ GE SQ+ER   L     G   V +ATDVAARG+D+ 
Sbjct: 254 RTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVAARGLDIE 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVV 368
            L  V++ +L + PE  +HR GRTGRAG  G +V  V P   +  +R E+L ++    + 
Sbjct: 314 SLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIEKLIKQ---KIK 370

Query: 369 WEPAPSVE 376
             P P +E
Sbjct: 371 LRPVPRIE 378


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++ ++ +
Sbjct: 12  IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNK-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  ++V 
Sbjct: 70  KAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK      V +++   N   + +      V  + +   ++ +++    +  +VF
Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLV 347


>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
 gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
          Length = 425

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 192/354 (54%), Gaps = 6/354 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + +V+   L  +G    T VQE  + P    +DV+  AQTG+GKT++F L L   +  +
Sbjct: 8   GVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPLLEKIKPQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +   AL IAPTRELA+Q+ R  E L    G+   V  GG  + R++  L+   
Sbjct: 68  G------TVAQALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLRRRP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGRL DH+R   L +  +  +VLDEADEML +GF +D+E +L  + +  ++ +F
Sbjct: 122 QLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQDYQLALF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K +  +   + I  E    + I+  A+ V+  ++ + +   +      
Sbjct: 182 SATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCASINEEAPY 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VFC+T+         LA   + V ALSG+L+Q +R+  L+  R+ + ++  ATD+AA
Sbjct: 242 LAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQILCATDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  ++
Sbjct: 302 RGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLRKM 355


>gi|58579756|ref|YP_198772.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424350|gb|AAW73387.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 429

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 208/386 (53%), Gaps = 16/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P +   AL+  G   LT +Q A++ P L  +D++V+AQTGSGKT+A+ L L    L  
Sbjct: 11  QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ- 69

Query: 66  NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRD 120
               +P   P  L    + PTREL  QV + L  L A     + +    GG +++ +   
Sbjct: 70  ----APEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMA 125

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IV+ TPGRL D +    L +S ++ +VLDEAD +LDLGF  +I+ IL   P +R
Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQR 185

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++ SAT  PAI +LAK   +D +R+ I +       I  RA+ V    R   + ++L+
Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQ 245

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF ++R +  +  + L++   + + L GELSQ  R   L+  +    +V +A
Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354
           TD+AARGID+  L  V++ +L  +  +  HR GRT RAG  G ++ FV  +  Q+     
Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGKAISFVTAERAQQWRLIE 365

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380
           + + L    +V   +EP+P+  + R+
Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391


>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
 gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 432

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 197/353 (55%), Gaps = 17/353 (4%)

Query: 4   FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P   +VI +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  +
Sbjct: 11  FADLPLHAEVI-QALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFN 69

Query: 61  TLLAENDRFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            LL      +PA      + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S 
Sbjct: 70  HLLT-----TPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESY 124

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +R  L  G  I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+  
Sbjct: 125 EVQREVLDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFR 184

Query: 175 SSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P    R  ++FSAT+S  +  LA ++  D  +V +  E +   +I       +  D+ 
Sbjct: 185 RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKM 244

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ ++     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    
Sbjct: 245 RLLLTLMEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTS 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G   V +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV
Sbjct: 305 GDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSV 357


>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
 gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
          Length = 506

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/378 (33%), Positives = 196/378 (51%), Gaps = 9/378 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+ +        
Sbjct: 19  AIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQKKPELRKPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISALRKPLDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    +   V++   N     +     +V    + + I +I+R  G    +VF  T
Sbjct: 199 RTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +D    V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREANVS 366
             V++ EL + PE+ +HR GRTGRAG  G +V ++        ++++R  ++      V 
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKTIERKPVE 378

Query: 367 VVWEPAPSVEAI--RERD 382
               PA S  A   +ERD
Sbjct: 379 GWTPPATSAAAFDRQERD 396


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 193/357 (54%), Gaps = 25/357 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
           AL+ +G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L   ++ +N D  +PA
Sbjct: 20  ALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVVGKNEDGAAPA 79

Query: 73  SA---------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                            P AL + PTRELA QV  +L     +  + +    GG+    +
Sbjct: 80  DPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDIDIMTIYGGMDFDPQ 139

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  +VVGTPGRL D    K L +  ++ VVLDEADEMLDLGF  D+E I+++ P
Sbjct: 140 IKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDVEKIINAVP 199

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRV------NIASENRQHSDIDYRAVLVALSDR 231
             R+ ++FSAT+  A+ TLA+ Y      +      +++   +    + YRA  +   D+
Sbjct: 200 AHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQLVYRAHSM---DK 256

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  +L+  G    I+F  T+ +  +    L +  FQV  L G+L Q +R  AL+  R
Sbjct: 257 SELVARMLQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSFR 316

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +G+  V +ATDVAARGID+ D+  V++ +   + +  +HR GRTGRAG  G++V ++
Sbjct: 317 EGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTLV 373


>gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 466

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 200/353 (56%), Gaps = 9/353 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F   N+ + I +A+   G+   T +Q   +   +  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MKKFSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +          + +APTRELA+QV  EL  +    GV      GG  ++R+ 
Sbjct: 61  IERVELGEEGIQ------GIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  HI+  TPGRL DH++ + + ++H++  VLDEADEML++GF +DI+ IL     
Sbjct: 115 KALKNRPHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+S  + +LA+ +  D   V + ++     +I+ + + +  + + + + N+
Sbjct: 175 PHQTLLFSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF  T+  V    + L +  +    + G+L+Q +R++ ++  ++    + 
Sbjct: 235 VDLQVPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIM 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG KG++V F+ P+
Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPR 347


>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
 gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
          Length = 522

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/470 (29%), Positives = 243/470 (51%), Gaps = 41/470 (8%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A  E  + + + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 77  ETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR 136

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI+
Sbjct: 137 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 190

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSA
Sbjct: 191 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 250

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 251 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGNSF 310

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 311 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 370

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREAN 364
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L  +  
Sbjct: 371 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEHLLGK-Q 429

Query: 365 VSVVWEPAPSVEAIRER--DAQRI----LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +       V A++ER  +AQR     L+D      ++G  K+  D+    HD  +   
Sbjct: 430 LPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTKGVKG-HKRGGDI----HDDSENFT 484

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           G          A + I P+  V G         + K  GG R +F   +W
Sbjct: 485 G----------ARKRIKPMGAVGG---------SHKPVGGGRKSFGKKNW 515


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 198/349 (56%), Gaps = 19/349 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL E GY   T +Q   +   L   D++ SAQTG+GKT AF L  A  LLA+
Sbjct: 9   NLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLP-ALNLLAD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               S +  P  L + PTRELA QV     +  +++ A+T  +V    GG+    + + L
Sbjct: 68  -IHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIV----GGMPYPLQNKLL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I ++ P++R+
Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILR 240
            LMFSAT    I  +AK   KD   + IA++  +H++I+ R   V   +  N ++ ++L 
Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLI 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRAR 296
                 AIVF ST+    R   +LAE L+    +  AL G+++Q  R+  L  +R G  R
Sbjct: 243 APDVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 299 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAV 347


>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
 gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
          Length = 524

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 199/356 (55%), Gaps = 10/356 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 78  ETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQR 137

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI+
Sbjct: 138 Y------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHII 191

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSA
Sbjct: 192 IATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSA 251

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 252 TMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGNSF 311

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 312 MIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRG 371

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 372 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLL 427


>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
          Length = 507

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 68  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L  +
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421

Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385
             +++       V A++ER  +AQR
Sbjct: 422 -QLTLYKCEEDEVMALQERVAEAQR 445


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 196/359 (54%), Gaps = 13/359 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     +  
Sbjct: 12  ILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLEIL----SKGQ 67

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           PA A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L+ G  I+
Sbjct: 68  PARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLRGGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D  +   ++ + L+ ++LDEAD MLD+GF +DI  IL + P+KR+ LMFSAT
Sbjct: 128 IATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQNLMFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK      + +++  +N   + +      V    + + +V ++  H  +  +
Sbjct: 188 FSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQKPSLLVELIYQHKWEQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++    L +H  +  A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+
Sbjct: 248 VFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVLVATDIAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLF 360
           D+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++        Q+++R  ++L 
Sbjct: 308 DIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDIERLIQKLL 366


>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
          Length = 516

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 184/344 (53%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L     R +
Sbjct: 12  IVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQLLSETAARQA 71

Query: 71  PAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +      A  AL + PTRELA QV   +        +   V  GGV ++ +   L+ G
Sbjct: 72  GGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGINPQIEQLKRG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+
Sbjct: 132 VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKILNVLPAKRQNLL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   + +A  N     +D R   V    +   + +++R H  
Sbjct: 192 FSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRELLAHLVRQHDW 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  R+ +ATD+A
Sbjct: 252 HQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLVATDIA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++
Sbjct: 312 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLV 355


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 187/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++ ++  
Sbjct: 12  IQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE-LLSKGNKAK 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  ++V 
Sbjct: 71  VGQI-RALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  + K +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK      V +++   N   + +      V  + +   ++ +++    +  +VF
Sbjct: 190 DEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQENWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 SRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLV 347


>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
          Length = 627

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 194/355 (54%), Gaps = 26/355 (7%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           L  RG   L  +Q    +     KDV+  A+TG+GKT AF L + + L  EN   D    
Sbjct: 59  LQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTKL--ENSGIDGLKS 116

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  + +APTREL  Q+  + E L +K   V+++  GGVS  ++   L+NG  I+ G 
Sbjct: 117 GRKPKVIVMAPTRELVSQIASDFESLISKNLKVLSI-YGGVSYEKQTTALKNGVDIIAGA 175

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPKKRRMLMF 185
           PGR+ D I    L++S ++ V+LDE D MLD+GF D +E IL      ++  K  + L+F
Sbjct: 176 PGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIYPSETDKKGPQTLLF 235

Query: 186 SATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+   I  + K Y K DA++V +  EN  +  S +++ A+     +R   I +I+R H
Sbjct: 236 SATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIPDIIRVH 295

Query: 243 GAKN---AIVFCSTRASVSRFTKVLAEHLFQ---VVALSGELSQQERSNALQMMRDGRAR 296
           G  N    I+FC  +         LA H         L G++ Q++R   L+  R+G+  
Sbjct: 296 GGGNQARCIIFCERKKDADE----LASHSAMKSDCHVLHGDVPQEKRELVLKKFREGKYS 351

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           V + T+VAARG+D+PD++LVI      + E+ +HRSGRTGRAGRKG+ + F  P+
Sbjct: 352 VLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCICFYEPK 406


>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
          Length = 843

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 189/351 (53%), Gaps = 8/351 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---AP 75
           GY   T VQ+  +   L  +D++ SA TGSGKT AF + + + LL +  + +P+     P
Sbjct: 428 GYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPVVNILLEKQVQGAPSGEVQKP 487

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             + I+PTRELA+Q+ RE       + +   +  GG  V  ++  L NG +I+VGTPGRL
Sbjct: 488 EVVIISPTRELAIQIHREARKFSHNSVLKSVIVYGGTQVSHQKSSLMNGCNILVGTPGRL 547

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKKRRM-LMFSATISP 191
            D +    ++ S+++  +LDEAD MLD+GF  DIEFI      +P  RR+ LMFSAT   
Sbjct: 548 KDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQHPTMTPVGRRVTLMFSATFPD 607

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  +A  Y  D V V   +    + D+      V   D+ N +V ILR  G    IVF 
Sbjct: 608 DVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDKRNKLVEILRDLGNSRVIVFV 667

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            ++ +       LA   FQ  ++ G+  Q +R  AL+  + G+  + +AT+VAARG+D+ 
Sbjct: 668 ESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFKSGQRNILVATNVAARGLDIA 727

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
            +E VI+ +L ++ E  +HR GRTGR G  G S+ F  P      A RL +
Sbjct: 728 GVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISFYDPDRDAPNAGRLVQ 778


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 182/344 (52%), Gaps = 3/344 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P +  +  +L E GY   T +Q A +   L   D+L  AQTG+GKT AF L +   
Sbjct: 6   FTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSLPILQN 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P S P  L + PTRELA+Q+   +E       +  AV  GGV  + + R L
Sbjct: 66  LSKHTRKIEPKS-PRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQVRAL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I++ TPGRL D    K L +  ++  VLDEAD MLD+GF  DI+ IL   P+KR 
Sbjct: 125 QGGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLPQKRH 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   I TLA     +  +V +   +     ++ R + V    + + +++IL+ 
Sbjct: 185 NLFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDLLLHILKD 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF   +   +R    L +       + G+ SQ +R  AL+  ++G  RV +AT
Sbjct: 245 ESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRVLVAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  +  VI+ EL   PE+ +HR GRT RAG  G+S+
Sbjct: 305 DIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISI 348


>gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 689

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/389 (34%), Positives = 206/389 (52%), Gaps = 20/389 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P A+   PTRELA+QV   L  +    G++V    GGV+   + R L++
Sbjct: 150 KLQSHLTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLIVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--------S 175
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L         +
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGST 267

Query: 176 SPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
           S +K   + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 SAEKTVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI 378
              +   ER+ R A +     PAP+ E I
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEI 473


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 187/338 (55%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +Q+  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 22  AVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 79  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVDVLIATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 139 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILR-YHGAKNAIVF 250
             + + +  + V++ ++        +    V       ++   +  +LR     +NAI+F
Sbjct: 199 RRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAKDLQNAIIF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   + +A+DVAARG+D+
Sbjct: 259 CNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILVASDVAARGLDI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  VI+ ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 319 PEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIV 356


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 180/335 (53%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L A       A 
Sbjct: 19  AISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHRLSAAPAANPKAG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +            V  GGV ++ + + L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQALKKRVDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K L++S ++ ++LDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA     +   V +A  N     +      VA   + + +V++++ +     +VF  T
Sbjct: 199 RSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQKQKRDLLVHLVKQNDWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++  + LA+H     A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 259 KHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V  +
Sbjct: 319 PHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFV 353


>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
 gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
          Length = 423

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 182/337 (54%), Gaps = 2/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GY   T +QE  +   +  KD+L  AQTG+GKT AF L +   ++ E  +
Sbjct: 10  QHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPILQNIMEE--K 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                A  AL +APTRELA+Q+G   +       + + V  GGVS + +   L+ G  I+
Sbjct: 68  TIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGTDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D IR   + ++ +   VLDEAD MLD+G   D+  I+   PKKR+ + FSAT
Sbjct: 128 VATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA     + V+V +   +     I      VA +D+ N ++ +L+    + ++
Sbjct: 188 MPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLLKNKQVERSL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K L +  F   A+ G  SQ  R  AL+  +  +  V +ATD+AARGI
Sbjct: 248 VFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P+L  VI  +L   PE  +HR GRTGRAG  G ++
Sbjct: 308 DVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAI 344


>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
 gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
          Length = 525

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    RF
Sbjct: 81  TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRF 140

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI++
Sbjct: 141 ------FALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPHIII 194

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 195 ATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 254

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + +
Sbjct: 255 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGNSFM 314

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 315 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILISTDVASRGL 374

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 375 DIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLL 429


>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
 gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
          Length = 507

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 68  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L  +
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421

Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385
             +++       V A++ER  +AQR
Sbjct: 422 -QLTLYKCEEDEVMALQERVAEAQR 445


>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
 gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 15/379 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     R        AL + PTRELA QVG+++  L   TG+     +  V      
Sbjct: 61  LQAIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112

Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             L     +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            + K R+ L+FSAT   +I  +A++  +DAV V +   + Q   I +    V  + R  A
Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLRDAVEVTVEGAD-QAPAIRHLFCEVEPAHRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +  
Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ +L  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + 
Sbjct: 292 CNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKS 351

Query: 355 RAERLFREANVSVVWEPAP 373
           RAE +  +    + W+  P
Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370


>gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 481

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 195/370 (52%), Gaps = 6/370 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++ + GY   +S+QE ++   L  KD++  A+TGSGKT AF + +   +  E     
Sbjct: 15  ILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCEKIELEE---- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +APTRELA Q+  +   +     +      G   +  + R+L+   HIVVG
Sbjct: 71  --REPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELKQRVHIVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    LN+  +K  ++DEADEML++GF + +E IL   PK +   +FSAT+ 
Sbjct: 129 TPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNTFLFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+K Y K+   + + +E +    I      V   ++ + +  ++      ++I+F
Sbjct: 189 EEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVIYKEVPGSSIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +V      +    F  +A+ G + Q+ R   +   + G     IATDVAARGID+
Sbjct: 249 CRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ ++    E+ +HR GRTGR G KG+++  +    +R  + +  + ++ ++ E
Sbjct: 309 ENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEIEEQFSLEIIKE 368

Query: 371 PAPSVEAIRE 380
             P+ E +++
Sbjct: 369 EPPTREEVKK 378


>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 480

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L         A
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373

Query: 368 V--WEPAPSV--EAIRERDAQR 385
           +  +EP PS   E I++R  Q+
Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395


>gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 524

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 189/346 (54%), Gaps = 5/346 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V+  A+   G+   T +Q  IL P L   D    AQTG+GK+ AF +++ + LL
Sbjct: 104 FDLAPEVM-RAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLL 162

Query: 64  AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
            +  D+      P AL +APTRELA+Q+ ++ E L   +G+      GGV   ++R+   
Sbjct: 163 RQRADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQRFE 222

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           Q    +++ TPGRL D  R K L++  ++ +V+DEAD +LD+GF  D+  I+  +P+K  
Sbjct: 223 QEPVDLLIATPGRLLDFARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPEKGK 282

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT++  I++LA  +    V V I  E      ++    L    ++   + N++
Sbjct: 283 RQTLFFSATLTAQISSLADQWTHKPVTVEIEPEQVAAESVEQLVYLATREEKFTILYNLI 342

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVFC+ R    R    L  H      LSGE+ QQ+R N L   + G+ R+ +
Sbjct: 343 VGRELERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAGKIRILV 402

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RG+ +  +  V++  L  + E+ +HR GRTGRAG+ G SV
Sbjct: 403 ATDVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSV 448


>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 530

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 181/337 (53%), Gaps = 2/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSP 71
           A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +      S 
Sbjct: 15  AVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMPPLAAASG 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G  IVV T
Sbjct: 75  KRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSGVDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA N       + +A  N     +  +   V    +   + ++++ H     +VF 
Sbjct: 195 EIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNWFQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+ 
Sbjct: 255 RTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 315 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 351


>gi|239813341|ref|YP_002942251.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239799918|gb|ACS16985.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 424

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 190/338 (56%), Gaps = 10/338 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +E GY   T++Q A +   L+ +DV  SAQTGSGKT AF L L   L AE     PA
Sbjct: 14  QAAAESGYAAPTAIQAAAIPAILQGRDVRGSAQTGSGKTAAFSLPLLQRLAAE-----PA 68

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            AP    AL + PTRELA QVG  L  L  +    + +A+  GGVS++ +   L+ GA I
Sbjct: 69  QAPRRVRALVLVPTRELAAQVGETLRSLAQHLPERLKIAIAFGGVSINPQMMSLRGGADI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    L +  +  +VLDEAD + DLGF +++  IL   P +R+ L+FSA
Sbjct: 129 MVATPGRLLDLVEHNALKLGAVSTLVLDEADRLFDLGFAEELGRILALLPARRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T  PAI  LA    +D   +++  E      I  R + V  + R   + ++L+ +     
Sbjct: 189 TFPPAIQALADGTLRDPAVIDVQGEPGTEPAIVQRVIEVDANRRTQLLRHLLKENEWDRV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+ +     + L ++    V   G+++Q  R+  L   ++ R  V IATD+AARG
Sbjct: 249 LVFVATQHAAQTVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  L +VI+ +L  +P + +HR GRTGRAG  G+++
Sbjct: 309 IDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAI 346


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/349 (38%), Positives = 198/349 (56%), Gaps = 19/349 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL E GY   T +Q   +   L   D++ SAQTG+GKT AF L  A  LLA+
Sbjct: 9   NLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLP-ALNLLAD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               S +  P  L + PTRELA QV     +  +++ A+T  +V    GG+    + + L
Sbjct: 68  -IHPSKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIV----GGMPYPLQNKLL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I ++ P++R+
Sbjct: 123 SQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRERQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILR 240
            LMFSAT    I  +AK   KD   + IA++  +H++I+ R   V   +  N ++ ++L 
Sbjct: 183 TLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLLI 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRAR 296
                 AIVF ST+    R   +LAE L+    +  AL G+++Q  R+  L  +R G  R
Sbjct: 243 APDVNQAIVFTSTK----RHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 299 VLVATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAV 347


>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 430

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/340 (37%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E G  +  S+QE      L  KDV+  A+TG GKT AFG+ L   +  + D   
Sbjct: 24  IVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLDRVFDDADVAE 83

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELAVQVG +L      T V +    GG     +   L +G  +VVG
Sbjct: 84  LDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAVLSSGVDVVVG 143

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L +  +  +VLDEADEMLDLGF  DI+ +  + P+  + ++FSAT+ 
Sbjct: 144 TPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPVQAMLFSATMP 203

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAI 248
             I TLA++     V +   + N   +    R V+      D+      IL+  G    I
Sbjct: 204 GPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVFRSHRMDKLEVTARILQARGRGRTI 263

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + + +   + LAE  F V ++ G+L Q  R  AL+  R G   + +ATDVAARGI
Sbjct: 264 VFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEVSILVATDVAARGI 323

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ +   +P   +HR GRTGRAG+ G++V ++
Sbjct: 324 DVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLV 363


>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 556

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/391 (35%), Positives = 205/391 (52%), Gaps = 39/391 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----------ASTL 62
           AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L             AS  
Sbjct: 49  ALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQKVQASQP 108

Query: 63  LAEND--------RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAV 107
               D        R  P + P  L + PTRELA+QV       G+ L  L   +      
Sbjct: 109 REPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ 162

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF D
Sbjct: 163 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRMLDMGFID 222

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           DI+ I+ ++P  R+ ++FSAT+   I +L     K+  R+ I     Q ++I      V 
Sbjct: 223 DIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQTVHYVD 282

Query: 228 LSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             D +D  + ++LR  G   AIVF +T++        LA+  F+  AL G+L Q  R+  
Sbjct: 283 DRDHKDRLLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHGDLPQGARNRT 342

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V 
Sbjct: 343 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVS 402

Query: 347 VI---PQNMQRRAERLFR---EANVSVVWEP 371
           ++    Q   +R ER  R     NV   +EP
Sbjct: 403 LVHHAEQGALKRIERFVRAPLPVNVVEGFEP 433


>gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 457

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 190/338 (56%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70
            +++ G+   + +Q   L   ++  D +  AQTG+GKT AF + + +  LA   + +R+ 
Sbjct: 89  GIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIINDFLANPIKEERY- 147

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
            A  P AL IAPTREL VQ+G + + L   TG+ VA  IGG+   ++ + L      IVV
Sbjct: 148 -AGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQLSRELVDIVV 206

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D      L +  ++ +V+DEAD MLD+GF   +  I+ S+P+K  R+ L+FSA
Sbjct: 207 ATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRKESRQTLLFSA 266

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +P + +L + +  +   + I  ++     +D +  +VA   +   + NI++   AK+ 
Sbjct: 267 TFTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAADQKFALLRNIVQLPDAKSI 326

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF + R    +  + L +   +   LSGE+ Q +RS  LQ  +DG  +V +ATDVA RG
Sbjct: 327 IVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGDLQVLVATDVAGRG 386

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +PE+ +HR GRTGRAG  G S+
Sbjct: 387 IHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSI 424


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348


>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
          Length = 490

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 196/353 (55%), Gaps = 10/353 (2%)

Query: 2   KIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++  V  + EA    GY   T++Q+  +   L+++D++  A+TGSGKT AF L + 
Sbjct: 62  KTFKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPIL 121

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P     AL +APTRELA Q+ +  E L +   +  A+ +GG+ + ++  
Sbjct: 122 QALL---DKPQPL---FALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAI 175

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH+ + KG ++ +L+  V+DEAD +LD+ F   +E IL   P+
Sbjct: 176 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPR 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++VN+++   Q  S +    + +    +D   + 
Sbjct: 236 ERRTFLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIY 295

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      K  IVF  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 296 LCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNI 355

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +ATDVAARG+D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 356 LVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQ 408


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 194/348 (55%), Gaps = 15/348 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q    +P    KD++  A+TG+GKT +F + L   L  + +      +
Sbjct: 157 LKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEKLQRDQEELKKTRS 216

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV ++ + +  K  + VA   GG     +   ++ G  I+VGTPGR
Sbjct: 217 PKVLVLAPTRELANQVAKDFQDITRK--LSVACFYGGTPYQGQINHIRRGIDILVGTPGR 274

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLD+GF D +E I+  S K       + L+FSAT 
Sbjct: 275 IKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGSEDNPQTLLFSATC 334

Query: 190 SPAITTLAKNYQKDAVR-VNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +  +AK Y K     +++  +  Q +   +++ A+    S R   I ++++ +   +
Sbjct: 335 PQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAAVIGDVIQVYSGND 394

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             AI+FC T+ +V+     L  H+ Q    L G+++Q +R   L+  R+G  +V +AT+V
Sbjct: 395 GRAIIFCETKKNVAEM--ALNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNV 452

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +     N
Sbjct: 453 AARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPN 500


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 190/347 (54%), Gaps = 2/347 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  +T +Q   + P  R +DVL SAQTG+GKT AF L +   LL +  
Sbjct: 10  PEIL-QALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPILQKLL-DTP 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +   A+   AL +APTREL  Q+   ++       + V    GG     + + L+ G  I
Sbjct: 68  KAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQKLRKGTDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +H+    L+++ ++ +VLDEAD MLD+GF  DI+ ++ +  K+R+ LMFSA
Sbjct: 128 IVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKERQTLMFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA    K    +     N   + +      V    +   +  ++     +  
Sbjct: 188 TFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELIGRKNWQRV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +TR    + T+ L         +  E +Q  R  AL+   +G+ RV ++T+VAARG
Sbjct: 248 LVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVSTEVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+PDLE V++ +L   PE+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 308 LDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEER 354


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 196/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     Y   T +Q   + P L+  D++  AQTGSGKT AF + + + L  + 
Sbjct: 75  VPELI-EACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQ 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L +  GV     +GG+S+  + RDL    H
Sbjct: 134 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPH 187

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   KG N+  LK +V+DEAD +LD+ F   ++ IL+  P + R   +
Sbjct: 188 IIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYL 247

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 248 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 307

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDVA
Sbjct: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 413


>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
 gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
          Length = 402

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 187/348 (53%), Gaps = 3/348 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +Q+  +   LR +DVL  AQTG+GKT AF L +   L   + R     
Sbjct: 15  AVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPILEMLSKTSKR---TY 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L +APTRELA QV    E L     +   V  GGV +  +   L+ G  I+V TPG
Sbjct: 72  TPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDKLKKGVDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   + L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S  I
Sbjct: 132 RLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKRQNLLFSATYSTEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
              A     +   + +++ N+    +      V  + +   +  ++R       +VF  T
Sbjct: 192 KRFADGLLNNPKIIEVSASNKAADGVTQAVYPVQKTKKRELLSTLIRNENWTKVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R TK L     +  A+ G  SQ  R+ AL   ++G  +  +ATD+AARG+D+  L
Sbjct: 252 KHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKALVATDIAARGLDIDML 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
             V++ +L + PE+ +HR GRTGRAG  G+++ ++  + Q++ + + R
Sbjct: 312 PHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKEIQR 359


>gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin]
 gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
           Friedlin]
          Length = 674

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/389 (34%), Positives = 204/389 (52%), Gaps = 20/389 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPIVV-KALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P A+   PTRELA+QV   L  +    G+VV    GGV+   + R L++
Sbjct: 150 KLPSHLTRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++    
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
                  + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 GAERPAHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI 378
              +   ER+ R A +     PAP+ E I
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEI 473


>gi|84621697|ref|YP_449069.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84365637|dbj|BAE66795.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 429

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 208/386 (53%), Gaps = 16/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P +   AL+  G   LT +Q A++ P L  +D++V+AQTGSGKT+A+ L L    L  
Sbjct: 11  QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ- 69

Query: 66  NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRD 120
               +P   P  L    + PTREL  QV + L  L A     + +    GG +++ +   
Sbjct: 70  ----APEQVPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMA 125

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IV+ TPGRL D +    L +S ++ +VLDEAD +LDLGF  +I+ IL   P +R
Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQR 185

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++ SAT  PAI +LAK   +D +R+ I +       I  RA+ V    R   + ++L+
Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQ 245

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF ++R +  +  + L++   + + L GELSQ  R   L+  +    +V +A
Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354
           TD+AARGID+  L  V++ +L  +  +  HR GRT RAG  G ++ FV  +  Q+     
Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIE 365

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380
           + + L    +V   +EP+P+  + R+
Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391


>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 461

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 136/400 (34%), Positives = 209/400 (52%), Gaps = 18/400 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL  +GY   T +Q   + P L  +D+L  AQTG+GKT AF L  +   L E + 
Sbjct: 11  QPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLP-SIDRLREAEN 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P  +   L +APTRELA Q+ +  +   A  G+ V   +GG SV+++R  L  G  I+
Sbjct: 70  QTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNKLHRGTDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  +   +  ++ +VLDEAD+MLDLGF   +  I + +PK R+ L FSAT
Sbjct: 130 VATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPKTRQTLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYH---G 243
           +  AI  L   Y ++  +V++  E+     I+    +V   ++ + +  IL  R+     
Sbjct: 190 MPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLFMVQQDEKQSLLELILSGRHEIPGK 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+    R  K LA+      A+ G  SQ +R  AL   +  +  V +ATDV
Sbjct: 250 LERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRAKTPVLVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--------- 354
           AARGID+P +  VI+ EL + PE  +HR GRT RAG  G+++    ++ ++         
Sbjct: 310 AARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERQYLKDIRKTT 369

Query: 355 --RAERLFREANVSVVWEP-APSVEAIRERDAQRILQDPL 391
               ERL    N   V E   P+  A +++  QR+   P+
Sbjct: 370 DAEFERLPLPDNFRAVVEGVGPTKPAPKQQRGQRVTPRPI 409


>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 430

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 5/340 (1%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +QE  +   L+  D+L  AQTGSGKT+AF L + + +LA  D+  P +A  AL + PTRE
Sbjct: 33  IQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILALGDKRHPKTAR-ALILVPTRE 91

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA+Q+   +  +   T +   + +GG+S   + R +  G  I+V TPGRL D IR K ++
Sbjct: 92  LAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMAKGVDILVATPGRLIDLIRSKYVD 151

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +S  +  +LDEAD MLD+GF +D+  I +   KK +  +FSAT+S  +  LA N  K  V
Sbjct: 152 LSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQTALFSATMSKEVNVLADNLLKKPV 211

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
           ++ + S+    ++I      V+ S++ + +  +L      + IVF  T+       + LA
Sbjct: 212 KIEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLLTNPALASVIVFIRTKHGADSVARSLA 271

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +  + V  + G  SQ  R  AL+  R+G  RV +ATD+AARGID+P +  VI+ +L  N 
Sbjct: 272 KTGYSVATIHGNKSQNARQRALKDFREGLVRVLVATDIAARGIDIPRISHVINYDLPDNA 331

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR 361
           E+ +HR GRTGR    G ++ +  + +++      ERL R
Sbjct: 332 ESYVHRIGRTGRNSASGDAITLFDEKIEQVRLCAIERLIR 371


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G  +   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D    R
Sbjct: 32  EALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 91

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 92  ATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    + L++SH++ +VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 152 DVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYH 242
           SAT+  A+ +LA+ Y      +N  S + + + +      V  +   D+   +  IL+  
Sbjct: 212 SATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMVSRILQAE 271

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC T+ + +   + L    F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 272 SRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 331

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++
Sbjct: 332 VAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLV 377


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 190/336 (56%), Gaps = 12/336 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75
           + N T VQ+  +   L  +D++  AQTGSGKT AF   +   LL    A + R    + P
Sbjct: 73  FKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIYGLLDRGLAGSQRGGRKTFP 132

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LAL IAPTRELA+Q+  E      +TGV   V  GG    ++ R+++ G  I+V TPGRL
Sbjct: 133 LALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQFREMERGCDILVATPGRL 192

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK-KRRMLMFSATISP 191
            D +    +++S ++ + LDEAD MLD+GF   I  I+   D  P  +R+ ++FSAT   
Sbjct: 193 IDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQRDMPPTGERQTMLFSATFPR 252

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKN-AIV 249
            I  +A ++ KD + + +      H+ I  +   L +  D+ + +++++  H  K   +V
Sbjct: 253 EIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDKKSMLMDLV--HAVKGLTLV 310

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +    L+   F   ++ G+ +QQER  AL+  R GR  + +ATDVAARG+D
Sbjct: 311 FVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSFRSGRTPILVATDVAARGLD 370

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P +  VI+ +L S+ ++ +HR GRTGRAG+KG++ 
Sbjct: 371 IPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLAT 406


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 185/342 (54%), Gaps = 6/342 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL  +GY   T +Q   + P L  +D++  AQTG+GKT AF L  +   L + D+
Sbjct: 11  QPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLP-SIDRLRDADK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            SP  +   L +APTRELA Q+    +   A  G+ V   +GG SV+++R  L  G  I+
Sbjct: 70  QSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDRNKLHRGTDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  K   +  ++ ++LDEAD+MLDLGF   +  I +  P  R+ L FSAT
Sbjct: 130 VATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPDDRQTLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA-- 244
           +   I  L   Y ++ V+V++  E+     ID    +V   ++   +  IL  R+     
Sbjct: 190 MPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLFMVQQDEKQTLLEMILSERHQVPGK 249

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+    R  K L +      A+ G  SQ +R  AL   +  +  + +ATDV
Sbjct: 250 FERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRAKTPILVATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  V++ EL + PE  +HR GRT RAGR G+++
Sbjct: 310 AARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAI 351


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/352 (37%), Positives = 195/352 (55%), Gaps = 18/352 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P ++   L+  GY + T +Q+  +   +   DV+ SAQTG+GKT AF L    
Sbjct: 3   FENLNLHPAIVKAVLAA-GYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSV 114
            L       +PA      P  L + PTRELA+QV  E    Y K    V V   +GG+  
Sbjct: 62  RLA------TPAKIQGRGPRILVLTPTRELALQVS-EAASKYGKFLPRVNVVSILGGMPY 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L     ++V TPGRL DHI    ++ S L+ +VLDEAD MLD+GF  D+E I  
Sbjct: 115 PLQNKLLSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIAS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233
           S+P  R+ L+FSAT+  AI  +A    K   R+ IAS++ +   I+ R   V  L+ ++ 
Sbjct: 175 STPTNRQTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNR 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++L     K AIVF +T+         L+    +  A+ G+++Q+ER+  L  +R G
Sbjct: 235 LLDHLLCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R ++ +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 295 RLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346


>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 443

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L    +   PA+
Sbjct: 15  AVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQRL----NSMPPAA 70

Query: 74  APL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IVV
Sbjct: 71  GGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVDIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT 
Sbjct: 131 ATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 191 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHNWFQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID
Sbjct: 251 FTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 311 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 349


>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
 gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
          Length = 519

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 72  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 246 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L  +
Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425

Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385
             +++       V A++ER  +AQR
Sbjct: 426 -QLTLYKCEEDEVMALQERVAEAQR 449


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 182/342 (53%), Gaps = 5/342 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + ++GY   T +Q A +   L  KD++ SAQTG+GKT AF L +   L A         +
Sbjct: 29  IKQKGYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKL-AMQSAGKETDS 87

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELAVQV + +      T +   V  GGVS+  +   L  G  IVV TPGR
Sbjct: 88  IRALILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGR 147

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R   L++  +  +V DEAD MLD+GF D+I  IL   P +R+ L+FSAT S AI 
Sbjct: 148 LLDHLRRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIY 207

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCS 252
            L+K      VR+ +   N     ++ + V    SDR  A+++ L  +YH  +  ++F  
Sbjct: 208 RLSKKLLSKPVRIEVDKANSAADSVE-QIVYAVDSDRKAALISHLINKYHW-QQVLIFSR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +    T  L        A  G+LSQ  R   L   + G  +  +ATDVAARG+D+ +
Sbjct: 266 KKQTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVE 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           L  V++ E+    E+ +HR GRTGRAG  G ++ +  ++  R
Sbjct: 326 LNYVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDAR 367


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LL+   R  
Sbjct: 12  ILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE-LLSNGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA QV   +        +  AV  GGV ++ + + L+ GA ++V 
Sbjct: 71  -ANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRLRKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FSAT S
Sbjct: 130 TPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     ++          +   +V +++    +  +VF
Sbjct: 190 DEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 250 TRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLV 347


>gi|212274773|ref|NP_001130659.1| hypothetical protein LOC100191761 [Zea mays]
 gi|194689766|gb|ACF78967.1| unknown [Zea mays]
          Length = 598

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 181/318 (56%), Gaps = 8/318 (2%)

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P  L +APTRELA QV +E++    K G V   C+ GGVS + ++  L  G  +VVGTP
Sbjct: 19  TPRVLVLAPTRELAKQVEKEIKESAPKLGTV---CVYGGVSYNVQQNALSRGVDVVVGTP 75

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I G  L +  ++ +VLDEAD+ML +GF +D+E IL   P  R+ ++FSAT+   
Sbjct: 76  GRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSMLFSATMPSW 135

Query: 193 ITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIV 249
           +  L++ Y  + + +++  +  +     I   A+ +  + +   + +++  Y      IV
Sbjct: 136 VKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVYAKGGKTIV 195

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+      +  L   +    AL G++SQ +R   L   R G+  V +ATDVAARG+D
Sbjct: 196 FTRTKKDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 254

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R  + L R+   +  +
Sbjct: 255 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLERDVGCNFEF 314

Query: 370 EPAPSVEAIRERDAQRIL 387
              PS+E + E  A+ ++
Sbjct: 315 ISPPSIEEVLESSAEHVI 332


>gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 522

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 189/343 (55%), Gaps = 3/343 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +  A+ + G+   T +QE +L   +  KD +  AQTG+GK+ AF + +   LL+ 
Sbjct: 112 NLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICRLLSR 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P AL +APTRELA+Q+ ++   L   T + +    GG+ ++++R+ L+N A
Sbjct: 172 PQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRLENEA 231

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKK-RRM 182
             IVV TPGRL D    K + +  ++ +V+DEAD MLD+GF  D+  I++S+ PK  R+ 
Sbjct: 232 VDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKHLRQT 291

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+S  +T LA  +  +   V I  E      +D    +    ++   + N +   
Sbjct: 292 LLFSATLSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTREEKFTLLWNTINQA 351

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF + R      ++ L  +      LSGE+ Q +R   L+  R+G+  V +ATD
Sbjct: 352 NLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKIAVLVATD 411

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VA RGI +  +  VI+  L  NPE+ +HR GRTGRAG  G+SV
Sbjct: 412 VAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISV 454


>gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 539

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 196/346 (56%), Gaps = 10/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L    
Sbjct: 131 VPDLL-ESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQ 189

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       AL +APTREL  Q+    + L +  G+  +  +GG+ +  + RDL    H
Sbjct: 190 QPY------FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPH 243

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGR+ DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P KR   +F
Sbjct: 244 VIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLF 303

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L +    + VRV ++S+ +   ++    +LV    ++  ++++L     K
Sbjct: 304 SATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGK 363

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + IVF  T A   R T +LA  L F  V L G+LSQ +R  +L   +  +A + +ATDVA
Sbjct: 364 SIIVFTRTVAHAQR-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVA 422

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q
Sbjct: 423 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 468


>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 477

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 193/364 (53%), Gaps = 3/364 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+++ GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L        
Sbjct: 16  ILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPILHQLSTRAAVAP 75

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELA QV   ++       +   V  GGV+++ + + L+    I+V 
Sbjct: 76  KPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKALKARVDILVA 135

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+  K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S
Sbjct: 136 TPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQRQNLLFSATFS 195

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I TLA     +   V +A  N     ++     V  + + + + +++++H  +  +VF
Sbjct: 196 DEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDLLAHLIKHHDWQQVLVF 255

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  + L +      A+ G  SQ  R+ AL   +DG  R  +ATD+AARGID+
Sbjct: 256 TRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRALVATDIAARGIDI 315

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
             L  V++ EL + PE+ +HR GRTGRAG  G ++ ++        R  E+L + A V V
Sbjct: 316 DQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLRDIEKLIKRAIVRV 375

Query: 368 VWEP 371
             EP
Sbjct: 376 EIEP 379


>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 472

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L         A
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373

Query: 368 V--WEPAPSV--EAIRERDAQR 385
           +  +EP PS   E I++R  Q+
Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 184/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +QE  +   L+ KDV+ +AQTG+GKT  F L +   L  +N    
Sbjct: 12  ILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERL--DNGTRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHIVV 129
             +   AL + PTRELA QV +E  + Y++   + + V  GGV  + +   L+ G  ++V
Sbjct: 70  KGNHVRALVLTPTRELAAQV-QENVFKYSRYQRLTSQVIFGGVKANPQMMKLRKGCDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT 
Sbjct: 129 ATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           SP I  LAK    D V V+++ EN     I+          +   +V +++    K  +V
Sbjct: 189 SPEIRELAKGLVNDPVEVSVSKENSTAVTIEQSIYPADKRKKAPMLVKMIKDGDWKQTLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   +R    L +       + G  SQ  R+ AL   + G  +V +ATD+AARGID
Sbjct: 249 FCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL +  E+ +HR GRTGRAG  G +  ++
Sbjct: 309 IPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLV 347


>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 479

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L         A
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373

Query: 368 V--WEPAPSV--EAIRERDAQR 385
           +  +EP PS   E I++R  Q+
Sbjct: 374 IAGFEPDPSAKPEPIQQRRGQQ 395


>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 763

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 190/336 (56%), Gaps = 3/336 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A++E GY++ T +Q   +   L  +DVL  AQTG+GKT +F L +   L   +DR
Sbjct: 232 EPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMDIL---SDR 288

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A  P +L + PTRELA+QV            +  A+ IGG S++ +R  L  G  ++
Sbjct: 289 RARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDVLSKGVDVL 348

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D     GL ++  + +V+DEAD MLD+GF  D+E I+   P  R+ L FSAT
Sbjct: 349 IATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNRQTLFFSAT 408

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++P I  LA  + ++   + +A      + I     LV   D+  A+ ++LR    +NA+
Sbjct: 409 MAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLRQEKVQNAL 468

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V   TK L +H F    L G+L+Q  R + L+  + G  ++ + +DVAARGI
Sbjct: 469 IFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVCSDVAARGI 528

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+  L  V + ++  + E+ +HR GRTGRAGR+G +
Sbjct: 529 DIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAA 564


>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
 gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
          Length = 518

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R+
Sbjct: 79  TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRY 138

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI++
Sbjct: 139 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 192

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 252

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + +
Sbjct: 253 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFM 312

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 313 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 372

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 373 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLL 427


>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
 gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
          Length = 518

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 198/355 (55%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R+
Sbjct: 79  TLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESPQRY 138

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    HI++
Sbjct: 139 ------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIII 192

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 193 ATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSAT 252

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      + +
Sbjct: 253 MTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFM 312

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 313 IFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGL 372

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 373 DIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLL 427


>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
 gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
          Length = 521

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 3/329 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +QE  +   L  +DVL  AQTG+GKT +F L +   L A   +   A 
Sbjct: 20  AVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMIDILSAGRAK---AR 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L IAPTRELA QV          T + +A+ IGGVS+  +   L  G  +++ TPG
Sbjct: 77  MPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAKLDRGVDVLIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     + ++ +K +V+DEAD MLD+GF  D+E I+   P  R+ L FSAT++P I
Sbjct: 137 RLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIRQTLFFSATMAPEI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +  +   V++ +      ++    V  ++ D+ +A+ ++L+     +A++FC+ 
Sbjct: 197 KRLADKFLMNPKEVSVDAPASAAENVAQHLVRCSVKDKRDALRSLLKSETVDSALIFCNR 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  +    + L  +  + V L G++SQ  R+  L   + G AR+ I +DVAARGID+  L
Sbjct: 257 KRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEARLVICSDVAARGIDIKGL 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             V + ++ S+ E+ +HR GRTGRAG  G
Sbjct: 317 SHVFNFDVPSHAEDYVHRIGRTGRAGLSG 345


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 183/331 (55%), Gaps = 5/331 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   T +Q   + P L  KD++  AQTG+GKT +F L +   + +   R   A
Sbjct: 14  KAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMIDVMASGRRR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTRELA QV    E       + +A+ IGGV +  + + L  G  +++ TP
Sbjct: 71  LMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALNEGVDVLIATP 130

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L ++  + +V+DEAD MLD+GF  DIEFI    P++R+ ++FSAT+ P
Sbjct: 131 GRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFSATMPP 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK +  +  R+ ++     + DI    + V    +   +  +LR    + AI+F 
Sbjct: 190 PIEKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESRKKRETLRWLLRNDHVETAIIFA 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V    K L +H F    + G++ Q  R   L   ++G   + +A+DVAARG+D+ 
Sbjct: 250 NRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILVASDVAARGLDVK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  V + +   +P++ +HR GRTGRAG KG
Sbjct: 310 GVSHVFNFDTPWHPDDYVHRIGRTGRAGAKG 340


>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 442

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 189/338 (55%), Gaps = 3/338 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A    G+ N T +Q   +   L  KD++  AQTGSGKT AF L +  +LL  +++     
Sbjct: 23  ACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPILQSLLEASEK--SVQ 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  A  ++PTRELA+Q+  + E L +  GV  AV +GGV + ++   L    HIVV TPG
Sbjct: 81  AFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQSIALGKRPHIVVATPG 140

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH+   KG ++  LK +VLDEAD +L+  F   ++ IL   P++RR  +FSAT++  
Sbjct: 141 RLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIPRERRTFLFSATMTKK 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +   ++ V++  AS+      +      +    +D  +V IL       ++VF  
Sbjct: 201 VKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKYKDCYLVYILTEKSGSTSMVFTR 260

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T  + +    VL     + + ++G ++Q +R  AL   + G   + I TDVA+RG+D+P 
Sbjct: 261 TCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNILICTDVASRGLDIPS 320

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q
Sbjct: 321 VDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 358


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 218/418 (52%), Gaps = 17/418 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q   +   L   D++  +QTG+GKT A+ L L   +  +N      
Sbjct: 16  QHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLPLLERMDTKNPNVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   ++       + +    GG S+ R+ R L+ G  IVVGTP
Sbjct: 74  ----ALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQIRSLEKGVQIVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +  K L++  L  VVLDEADEML +GF DD++ IL +SP  R+   FSAT+   
Sbjct: 130 GRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASPSTRQTACFSATMPRE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  L  N+ K  + V ++      + I+ +  ++     +   +  +L     ++AI+F 
Sbjct: 190 IRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQPLLEIEPLESAIIFV 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ ++ +ATD+AARG+D+ 
Sbjct: 250 RTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREANVSVV 368
           +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +   I + + R+ E+  R+   S  
Sbjct: 310 NLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLLRQIEQRLRQRLES-- 367

Query: 369 WEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             P PS   VEA R    Q  L++ L  + +      +V  L  ++DP+ IAA  L++
Sbjct: 368 -SPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDPQAIAAAALQM 423


>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
 gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
          Length = 462

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/403 (32%), Positives = 212/403 (52%), Gaps = 18/403 (4%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P +  + + L   G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   
Sbjct: 6   FTSLPLLPALLDNLKSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           L  +  R +P     AL + PTRELA QV +EL  L  +   V +    GG +   +   
Sbjct: 66  L--DPTRLTPQ----ALLVCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAES 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+VVGTPGR+ DH+    L++S L  +VLDEAD M+D+GF DDI  I    P KR
Sbjct: 120 LARGTHLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRMVDMGFYDDIVAIASHCPTKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNI 238
           + L+FSAT    I  L+  + ++   V + +   QH       +   + D+D  +A+  +
Sbjct: 180 QTLLFSATYPDNIRKLSARFLRNPAEVKVEA---QHDASRIEQIFYEIDDKDRLDAVTRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +   ++ + FC+T+       + L        AL+G+L Q+ER   L    +    V 
Sbjct: 237 LAHFRPESTLAFCNTKIRSHDLVERLQAEGISAQALNGDLEQRERDEILIQFANRSCAVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +++ + E  +HR GR+GR  +KG+++ +      R A  
Sbjct: 297 VATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANL 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           + +     +VW     ++ +R + A R L+ P+    IQG +K
Sbjct: 357 IEQYQGAPLVWG---DIKTLRPK-ADRPLRAPMITLCIQGGKK 395


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/345 (36%), Positives = 185/345 (53%), Gaps = 4/345 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  + T +Q   +   L  +DV+  AQTG+GKT AFGL L   LL++ D+  P S   AL
Sbjct: 53  GLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDRLLSDGDKVQPRSV-RAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL  Q+   L     KT V V+  +GG +++ + R L  G  ++V TPGRL D 
Sbjct: 112 ILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLAKGTDVLVATPGRLLDL 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  K + +   K +VLDEAD+MLD+GF   +  I     + R+ L+FSAT+   +  L+K
Sbjct: 172 VDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQTLLFSATMPKLVEELSK 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +Y  +  R+ +A   +    +      +A  D+ N +  +L       ++VF  T+    
Sbjct: 232 SYLTNPERIEVARAGKAADKVRQSVHYIATKDKLNLLSKLLAERPDDLSLVFGRTKHGCE 291

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +  K L    F   ++ G  SQ +R  AL+  + G  R+ +ATDVAARGID+P +  V +
Sbjct: 292 KLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRILVATDVAARGIDIPAVSHVYN 351

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360
             L   PEN +HR GRT RAGR G +V F  P  + M R  +RL 
Sbjct: 352 FNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRDIQRLM 396


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/347 (36%), Positives = 199/347 (57%), Gaps = 18/347 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL   GY + T +Q   +   L+ +D+L+SAQTGSGKT AF + +       
Sbjct: 50  NIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVL------ 103

Query: 66  NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERR 119
            DR S A++      AL + PTRELA QV   +   Y+K   G+     +GG   + +  
Sbjct: 104 -DRLSRATSFDKLTKALILTPTRELAQQVHDSVR-TYSKDMRGLFCVPLVGGAPYNGQIT 161

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V TPGRL DHI    +++S L+ +VLDEAD MLD+GF DDI  IL ++P  
Sbjct: 162 ALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPID 221

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-I 238
           R+ +M SAT    +  +A ++ K+  RV+I  E+   + I+ +       D  N +++ I
Sbjct: 222 RQTIMCSATWDGPVGKIAASFTKNPERVSIKVES---AHIEEKVYYCDDFDHKNRLLDKI 278

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + +   +  I+F +T+ S  +  K L E   +   L G+L Q +R+  +Q +R+G+ ++ 
Sbjct: 279 VCHKDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKIL 338

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+D+P L  VI+ +L    E+ +HR GR GRAGR G+++
Sbjct: 339 VATDVAARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAI 385


>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 414

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/377 (34%), Positives = 196/377 (51%), Gaps = 10/377 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E GY + T +Q+  +   L   D+L  AQTG+GKT AF L +   L     R    
Sbjct: 14  KALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQRL--HQSRMHGE 71

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              +  L + PTRELA+Q+G         TG++  V  GGV+ + +   L  G  I+V T
Sbjct: 72  KRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTARLVRGVDILVAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I    L++  ++  VLDEAD MLD+GF  DI  +L   PKKR+ L FSAT+ P
Sbjct: 132 PGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKRQSLFFSATMPP 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L+     +   V +   +     I+ + + V   ++++ + ++L+    ++A+VF 
Sbjct: 192 EIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLLKERNIESALVFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  + LA H     A+ G  SQ  R  AL   +  + RV +ATD+AARGID+ 
Sbjct: 252 RTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLVATDIAARGIDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANVS 366
           +LE VI+ +L + PE  +HR GRTGRAG +G +      N + +A     E+L       
Sbjct: 312 ELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFC--NAEEKAYLRDIEKLIARKIPV 369

Query: 367 VVWEPAPSVEAIRERDA 383
           +   P P V  I E  A
Sbjct: 370 IEDHPFPMVNTIPENAA 386


>gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
          Length = 383

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 199/352 (56%), Gaps = 8/352 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVINDLLHN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + V   +GGV   ++++ L 
Sbjct: 69  PIQEQRFR--GEPRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEE 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + + V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQGKNNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++
Sbjct: 307 ATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSED 358


>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
          Length = 469

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 196/355 (55%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ +A  +  +   + +Q   +   L+ KD++  A+TGSGKT AF L +   LL    R 
Sbjct: 49  VLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQRH 108

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L    HI++
Sbjct: 109 ------FALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHIII 162

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 163 ATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTFLFSAT 222

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   +D VRV ++++ +    +    V +    +D  +V+IL  +   + +
Sbjct: 223 MTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAGNSFM 282

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCST  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG+
Sbjct: 283 VFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRGL 342

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++VI+ ++  + ++ +HR GRT RAGR G ++  + Q    + +R E L 
Sbjct: 343 DIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLI 397


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 1/346 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + Q +   L+  G+   T VQ+  +   L  KDVL  AQTG+GKT AFGL +   L+ +E
Sbjct: 10  LSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLPIIQQLIQSE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + R    +   AL + PTRELA QV   L      T + +    GG S++ + R+L  G 
Sbjct: 70  SVRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINVQTRNLHQGC 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K ++++  + +VLDEAD MLD+GF  DI+ IL     +R+ L F
Sbjct: 130 DILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRFNPERQTLFF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A   QKD + + ++  N     +      V    +   +  ++     +
Sbjct: 190 SATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQ 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 250 QVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+  LE V++ ++    E+ +HR GRTGRAG++G +V ++ Q+
Sbjct: 310 RGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQD 355


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 609

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 186/345 (53%), Gaps = 6/345 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFPGGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R+ P   P  L + PTRELA QV    +       +  AV  GGV ++ + + +  
Sbjct: 70  DREHRYGPKQ-PRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMNPQIQAVAK 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++V  PGRL D    K +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L
Sbjct: 129 GIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQNL 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  IT LA    ++  R+ +   N     I+ R   VA S +   + +++    
Sbjct: 189 LFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRALLAHLITQGA 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD+
Sbjct: 249 WEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQVRILVATDI 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 309 AARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
          Length = 478

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 190/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA     Y   T +QE  +   L+ +D++  A+TGSGKT AF L +   LL   D+  P 
Sbjct: 70  EACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQALL---DKPQPL 126

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+G+  E L +   +  AV +GG+ +  +   L    HI+V TP
Sbjct: 127 ---FGLVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKKPHIIVATP 183

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +V+DEAD +LD+ F   I+ +L   P++RR  +FSAT+S 
Sbjct: 184 GRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTYLFSATLSS 243

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVF 250
            + +L +   +D VRV+++S   Q      + +LV    R D  ++ ++     K+ I+F
Sbjct: 244 KVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLVNEFTGKSTIIF 303

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 304 TRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDILVATDVAARGLDI 363

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q
Sbjct: 364 SKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQ 403


>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
 gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
          Length = 780

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 191/344 (55%), Gaps = 8/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   T +Q   +   L  KD+L SA TGSGKT AF L +   LL    R S  
Sbjct: 195 KAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILERLLF---RDSEY 251

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   L + PTRELA+Q    LE L   + +   + +GG+S   +  +L+    +V+ TP
Sbjct: 252 RAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKRPDVVIATP 311

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+    G+ +  L+ ++LDEAD +LD+GF+D+I  I+DS P  R+ ++FSAT++ 
Sbjct: 312 GRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTMLFSATLND 371

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNIL-RYHGAKNA 247
            + TLAK   +  +RV + +  +  S +D   V +    LSDR   ++++  R       
Sbjct: 372 EVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCTRVFNTGGT 431

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC ++  V R   +      +   L G LSQ++R ++LQ  RDG+    +A+DVA+RG
Sbjct: 432 IIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLLASDVASRG 491

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+  ++ VI+  + +     +HR GRT RAG +G S   I +N
Sbjct: 492 LDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITEN 535


>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 463

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 2/339 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L   L  E  +  P  
Sbjct: 15  ALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLLQYLGTEPQKVGPGP 74

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +V+  P
Sbjct: 75  RKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDSLRRGVDMVIACP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           GRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   PK+ R+ L+FSAT   
Sbjct: 135 GRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFPE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  LA  + ++   V +  +N     I +R   V  + +   ++++L        +VF 
Sbjct: 195 SIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPVDTARKRELLLHLLGQDARVQTLVFA 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +    L +   Q  A+ G  SQ +R  AL   + G+ +V +ATD+AARGID+ 
Sbjct: 255 KTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGKVKVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q
Sbjct: 315 QLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQ 353


>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 185/328 (56%), Gaps = 7/328 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L+ KD++  AQTGSGKT AF L +  +L      +   SA  A  +APT
Sbjct: 83  TPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSL------WDSPSAFFACVLAPT 136

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK 142
           RELA Q+ ++ + L +  GV   V +GG+ +  +   L    H++V TPGRL DH+   K
Sbjct: 137 RELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHVIVATPGRLHDHLEHTK 196

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++ +L+ +++DEAD +LD+ F   I+ IL   PK+R+  +FSAT++  +  L +    
Sbjct: 197 GFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKTYLFSATMTTKVAKLQRASLN 256

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + V+V ++++    S +    + +    +D  +V +      K+ IVF  T    SR + 
Sbjct: 257 NPVKVEVSAKYDTVSALVQTYLFLPFKHKDTYLVYLANELSGKSLIVFTRTVHDASRLSL 316

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L    F  V L G+LSQ  R  AL   + G   + +ATDVA+RG+D+P ++ VI+ +L 
Sbjct: 317 ILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLVATDVASRGLDIPAVDCVINFDLP 376

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +N ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 377 TNSKDYIHRVGRTARAGRSGKSITLVTQ 404


>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
           [Macaca mulatta]
          Length = 455

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 190/345 (55%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +    +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 31  VTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPH 144

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 145 IIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 205 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGN 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 265 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 325 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 369


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 183/342 (53%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTRR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALTYAKNMKWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D +    ++ + L+ ++LDEAD MLD+GF +DIE I+ ++P+ R+ L
Sbjct: 126 PVDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   K+   V I   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G++V
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAV 347


>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
 gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
          Length = 519

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 214/385 (55%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 72  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V++ ++++ +    +    + + +  +D  +V+IL      
Sbjct: 246 SATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E L  +
Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425

Query: 363 ANVSVVWEPAPSVEAIRER--DAQR 385
             +++       V A++ER  +AQR
Sbjct: 426 -QLTLYKCEEDEVMALQERVAEAQR 449


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 10/352 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +        +R  P   
Sbjct: 19  LENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPIL-------ERLDPNKR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA+QV   +      + + V    GG S+ R+   L+ G H+VVGTPG
Sbjct: 72  AVQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +    L +  +K  VLDEADEML +GF DD+  IL  +P+ R+  +FSAT+ P+I
Sbjct: 132 RVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQTALFSATMPPSI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252
             L   +    V V +       + I+  A L+     +  A+  IL     + A++F  
Sbjct: 192 RQLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  
Sbjct: 252 TRRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDL 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR ++ F   N
Sbjct: 312 LSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 362


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 218/400 (54%), Gaps = 20/400 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 306

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 307 KNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 366

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 367 EDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++ +A       +L G++ Q++R   L+  R
Sbjct: 427 VIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQ-DAQSLHGDIPQKQREITLKGFR 485

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 486 NGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 545

Query: 352 MQRRAERLFREANVSV--VWEPAPSVEAIR--ERDAQRIL 387
            + +  ++ ++A +    +  P+P+ E I+   +DA R+L
Sbjct: 546 EEYQLAQVEQKAGIKFKRIGVPSPT-EIIKASSKDAIRLL 584


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 5   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 64  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A+   L 
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 236 -HREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349


>gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 438

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 194/343 (56%), Gaps = 13/343 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E G+   T +Q A L   L++KD+   AQTG+GKT+AF +A    LL+     S
Sbjct: 20  IKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLS-----S 74

Query: 71  PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           P       + P A+ +APTRELA+Q+ R+   L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PIPEGRQLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GR+ D++R   +N+S ++ VVLDEAD M DLGF  DI F+    P  K R  
Sbjct: 135 IDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDAKLRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AI+F +T+ S       L+    +V  L+G++ Q++R   L+    G     +ATD
Sbjct: 255 WPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDFLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ + D+  V + +L  + E+ +HR GRTGR G+KG+S+
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSI 357


>gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 631

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 192/373 (51%), Gaps = 4/373 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F +  +P+ +   L  +G      +Q   L   L  +DVL   +TGSGKT+AFGL L
Sbjct: 73  MQTFSSLGVPKALVSVLDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPL 132

Query: 59  ASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E       + PL L +APTRELA Q+   +E L    G+   V  GGVS  R+
Sbjct: 133 VARLAEREAAYMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQ 192

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IV+  PGRL D +R K +++  ++  VLDEAD M DLGF   ++ +LD++P
Sbjct: 193 ERALKAGVDIVIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTP 252

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  + + Y    V  ++       S +++  + VA  +    ++ 
Sbjct: 253 TQGQRLLFSATLDNGVDKIVQRYLSQPVTHSVDEPKAAVSTMEHHVLAVADQNVKKQLIV 312

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L   G    ++F  T+    +  K L +     V L G LSQ  R   L     G  RV
Sbjct: 313 EL-AAGTGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRV 371

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 372 LVATDVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDGTVVTISLPEQQSDVK 431

Query: 358 RLFREANVSVVWE 370
           +L R A V V +E
Sbjct: 432 KLMRAAGVDVAFE 444


>gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
 gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
          Length = 438

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  E  R         L + P
Sbjct: 1   MTPIQAQSLPSILEGKDVIGQGKTGSGKTAAFGLGLLQRLDVERFRIQ------TLVLCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L      + V    GG+    +   L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVLDHLTK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L + +L   VLDEAD ML++GF+D ++ I++ +P  R+ L+FSAT    I  +A    
Sbjct: 115 GTLRLDNLTTFVLDEADRMLEMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIAAKIM 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            +   V +AS +   +   +   +    +R + +  +L  H  ++ ++FC+T+  V    
Sbjct: 175 NNPEMVEVASTHDDSTIKQHFYKVKNFGERLDTVRGLLLQHKPESTVIFCNTKKDVQDVA 234

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L    F V+AL G+L Q++R  AL    +    V +ATDVA+RG+D+  L+ VI+ ++
Sbjct: 235 DELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQV 294

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           S + E  +HR GRTGRAG KGM+  +  +
Sbjct: 295 SHDSEIHVHRIGRTGRAGSKGMAYTIFDE 323


>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 442

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLV 348


>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 426

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-F 69
           I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L   L  ++ +  
Sbjct: 12  IINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLHLLSQDSLKSA 71

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           S AS+P+ AL + PTRELA QV   +        +   V  GGVS++ +++ L+    I+
Sbjct: 72  SNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGRVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F AT
Sbjct: 132 VATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     +  +   +    + + + +++R       +
Sbjct: 192 FSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQVL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+AARG+
Sbjct: 252 VFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++
Sbjct: 312 DISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 351


>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
 gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
          Length = 440

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192
           L DH+  + L +S L+ ++ DEAD +LDLGF + ++ I D +  + R+ L+FSAT+  A 
Sbjct: 134 LADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRLRQTLLFSATLDHAQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           +  L++N  K   ++ +++ N QHSDI     L    D   A++ + L+       I+F 
Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDITQTLYLADHLDHKEALLAHFLKQDEVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+ VAL+G+L+Q +R + +     G  ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLV 350


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 194/361 (53%), Gaps = 35/361 (9%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ +AL +  +   T++Q   +   L++KD+L SAQTG+GKT+AF + L + LL++    
Sbjct: 12  VLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPLINKLLSD---- 67

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128
            P S  + L + PTRELA QV   +  L  K+  +  A+ IGG   +++   L++   I+
Sbjct: 68  -PTS--MGLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQLAQLRSNLRII 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+     N   +  ++LDE D M D+GF   +E I+   P +R+ LMFSAT
Sbjct: 125 IGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLPTQRQTLMFSAT 184

Query: 189 ISPAITTLAKNYQKDAVRV--------NIASENRQHSDID------YRAVLVALSDRDNA 234
             P +  LA  Y +   R+         I ++N     ++      Y  +L  L+ R+  
Sbjct: 185 FPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFELLTQLNSREGT 244

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I            +VF  T+ +    +  L +  +   A+ G L Q +R   ++  R GR
Sbjct: 245 I------------LVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGR 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            ++ +ATD+AARG+D+P ++ VI+ ++   PE+ +HR GRT RAG KG ++ FV  Q+ +
Sbjct: 293 HQIMVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRK 352

Query: 354 R 354
           R
Sbjct: 353 R 353


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 194/342 (56%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GK   F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 190/342 (55%), Gaps = 13/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  GY + T +Q   +   L  +D+L  AQTG+GKT AF L + S L     R   A
Sbjct: 14  QAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPMLSRLEQGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGVSVHRERRDLQNGAHIV 128
             P  L + PTRELA QV    E  +A+ G+     VA+ IGGVS   +   +  GA ++
Sbjct: 71  RMPRTLILEPTRELAAQV----EESFARYGINHKLNVALLIGGVSFAEQENKIMRGADVL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D      L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT
Sbjct: 127 IATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246
           + P IT L + +  + VR+ +A  +   + I    V  A   + R+     I      KN
Sbjct: 187 MPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQLIRGAENLKN 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ +  V+   K L +H F   AL G++ Q+ R  +L   + G   + + +DVAAR
Sbjct: 247 AIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNLLVCSDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G+++ ++
Sbjct: 307 GLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIV 348


>gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 438

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 185/333 (55%), Gaps = 10/333 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASAP 75
           G+   T +Q A L   L  +D+   AQTG+GK+ AF LA    L+    E  +      P
Sbjct: 28  GFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHRLMTVPVEEGK----EGP 83

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L +APTRELA+Q+ R+   L   TG+  A   GG     +R+ LQ G  I++GTPGR+
Sbjct: 84  WTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQQLQEGVDIIIGTPGRV 143

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAI 193
            D  + +  ++ H++ V+LDEAD M DLGF  DI +++     P KR  ++FSAT+S  +
Sbjct: 144 IDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEPSKRMNMLFSATLSHRV 203

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCS 252
             LA  +  D   V I SE      +  +   V+  ++   ++ ++R   A N +I+F +
Sbjct: 204 MELAYEHLNDPEVVRIESEQITADKVRQKLYHVSKDEKIPLLLGLIRQEEAMNRSIIFVN 263

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +  R T  L  +  +   +SG++ Q++R + L+  +DG  R  +ATDVAARG+ + D
Sbjct: 264 TKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGELRFLVATDVAARGLHIED 323

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ +L  +PE+ +HR GRT RAG  G ++
Sbjct: 324 VSHVINYDLPQDPEDYVHRIGRTARAGASGDAI 356


>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
 gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
          Length = 474

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A +   Y   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   +   
Sbjct: 62  DACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPILQALMEKPQPY--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELAVQ+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 119 ---FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSISLGKKPHIIVATP 175

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 176 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPRERRTYLFSATLSS 235

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V+IL     ++ I+F
Sbjct: 236 KVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDVYLVHILNEFPGQSTIIF 295

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 296 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNILVATDVAARGLDI 355

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAGR G ++ ++ Q
Sbjct: 356 PAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQ 395


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 187/335 (55%), Gaps = 9/335 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76
           Y   T VQ+  +   L  +D++  AQTGSGKT AF L + + ++ E      FS    P 
Sbjct: 355 YDRPTPVQKYSIPIVLGGRDLMACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQEPQ 414

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           A+ +APTRELA+Q+  E       T +   +  GGVSV   +  +Q G H++V TPGRL 
Sbjct: 415 AICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHHKSQIQRGCHLLVATPGRLL 474

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKK--RRMLMFSATIS 190
           D I    ++I  LK ++LDEAD MLD+GF  +I  +++++    P K  R+ LMFSAT  
Sbjct: 475 DFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETASWGMPAKGERQTLMFSATFP 534

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+++ +D + + I      ++D++   +  +  D+   + +IL   G +  +VF
Sbjct: 535 EEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQYDKREKLTDILGNLGQERVLVF 594

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +       L++  F   ++ G+  Q+ER  AL   R GRA V +AT VAARG+D+
Sbjct: 595 VETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLVATSVAARGLDI 654

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P + +V++ +L S+ +  +HR GRTGR G  G ++
Sbjct: 655 PKVMVVVNYDLPSSIDEYVHRIGRTGRVGNTGKAI 689


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/371 (35%), Positives = 199/371 (53%), Gaps = 7/371 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L++ G+   T +Q   +   +  +D++  AQTG+GKT AFGL +   LL +++
Sbjct: 27  PTVVA-TLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIE-LLMKDE 84

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R         L +APTREL  Q+G  L     KT + +   +GG S+++++  L+ G  I
Sbjct: 85  RRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLERGTDI 144

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D I    +++  +  +VLDEAD+MLDLGF  D+  I    P KR+ L+FSA
Sbjct: 145 LVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQTLLFSA 204

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGAKN 246
           T+  AI  LA ++  + V V ++   +    ++ Y   +   + +   +   L  H    
Sbjct: 205 TMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTELLKKTLADHPDGR 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+    +  K L    F V ++ G  SQ +R  AL+  RDG  R  IATDVAAR
Sbjct: 265 SIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLIATDVAAR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREA 363
           GID+P +  V + +L   P+  +HR GRT RAGR G+++ F  P    + R  ERL    
Sbjct: 325 GIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRDIERLM-GI 383

Query: 364 NVSVVWEPAPS 374
            +SV    AP+
Sbjct: 384 EISVASGEAPA 394


>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
 gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
          Length = 473

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 3   AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 60

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 61  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 120

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 121 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 180

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 181 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 240

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 241 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 300

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 301 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 360

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 361 VIPGFEPDPNAKPEPIQRR 379


>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 423

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 187/336 (55%), Gaps = 1/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E+GY   + +Q   +   +  KDV+ +AQTG+GKT AF L +   LL+++ R   A
Sbjct: 14  KAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPILE-LLSQSKRRVQA 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L + PTRELA Q+G  +        +  AV  GGV+++ + + L+ G  I+V TP
Sbjct: 73  NQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKRLRGGVDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+ +VLDEAD MLD+GF +DI  +L   PK+R+ LMFSAT S +
Sbjct: 133 GRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKERQNLMFSATFSSS 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    + V +++   N     ID     V    +   ++ ++R +     +VF  
Sbjct: 193 INNLARGMFNNPVEISVTPPNSTVEIIDQCIYPVDKKQKPALLIQLIRDNKWGQTLVFSK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    L +      A+ G  SQ  R+ AL   ++G  ++ +ATD+AARG+D+  
Sbjct: 253 TKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQILVATDIAARGLDIDL 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 313 LPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLV 348


>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
 gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
          Length = 488

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           DM98]
          Length = 434

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 433

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 183/345 (53%), Gaps = 3/345 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++ +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPELV-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLF--ESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF ++++ ++ S    R
Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +       L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG++G ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAI 344


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 207/399 (51%), Gaps = 34/399 (8%)

Query: 5   ENIPQVI--------GEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P  +        GEAL+       YV  T VQ   +   L  +D++  AQTGSGKT 
Sbjct: 114 ENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTA 173

Query: 53  AFGLALASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           AF   + S ++   D       R +    PLAL ++PTREL++Q+  E +    +TGV V
Sbjct: 174 AFCFPIISGIMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKV 233

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +H++ R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF
Sbjct: 234 VVAYGGAPIHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGF 293

Query: 166 RDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++      P  R+ ++FSAT    I  LA ++    V + +         I  
Sbjct: 294 EPQIRKIVEQMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQ 353

Query: 222 RAVLVALSDRDNAIVNIL---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           R   V  SD+ + ++++L   R +G +      +VF  T+         L  + F   ++
Sbjct: 354 RVEFVQESDKRSHLMDLLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSI 413

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ SQQER  AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GR
Sbjct: 414 HGDRSQQEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGR 473

Query: 335 TGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV-VW 369
           TGRAG+ G++     +   +M R    L +EAN  V  W
Sbjct: 474 TGRAGKSGLATAFFNEGNASMARPLSELMQEANQEVPAW 512


>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 433

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 194/351 (55%), Gaps = 2/351 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A++E GY ++T +Q+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFAPEIL-RAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQRM- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N + +  S    L + PTRELA QV   +        + V    GGV +  + + L+ 
Sbjct: 64  CDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL +HI    L++S+++ +VLDEAD MLD+GF  DI+ IL +  KKR+ +
Sbjct: 124 GADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKRQNM 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  +  LA +  +    + +  +N     +      V    +   I  ++    
Sbjct: 184 LFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRELISELIGTKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF +TR +  +  K L         + GE +Q  R  AL+   +G+ RV +AT+V
Sbjct: 244 WQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVLVATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+ +LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 304 AARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A+   L 
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 232 -HREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/393 (34%), Positives = 217/393 (55%), Gaps = 19/393 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGMNPQVQAMARGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE- 362
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++  V P  + + +  ER+ ++ 
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQK 371

Query: 363 -ANVSVVWEPAPSVEA----IRERDAQRILQDP 390
            A+  ++   A +VEA    +RER   R  ++P
Sbjct: 372 IADGDLMGFDASAVEAEKPEVRERPDVRNPRNP 404


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 216/415 (52%), Gaps = 15/415 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-AS 73
           L + G+   T +Q   +   L  +DV+  +QTG+GKT AF L +        ++  P A 
Sbjct: 18  LEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLPML-------EQIDPNAR 70

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +  L +   V +    GG S+ R+ R LQ  A +VVGTPG
Sbjct: 71  GVQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQIRLLQRNAQMVVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +    L +  +K VVLDEADEML +GF DD++ IL  +PK+R+   FSAT+  AI
Sbjct: 131 RVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAPKERQTACFSATMPKAI 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCS 252
             L   + K  V V +       + I+ R  ++     +  A+  IL     + A++F  
Sbjct: 191 RDLVNQFLKSPVTVTVELPKATPARIEQRVYMIPRGCSKSKALQPILALEDPEAALIFVR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR S +  T  L      V    G+LSQ +R   L   R  + R  +ATD+AARG+D+  
Sbjct: 251 TRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVRWVVATDIAARGLDVDH 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGRAG+ G ++ +I    +R+  ++ R+   ++     
Sbjct: 311 LTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKLHQIERKVRQNLQVSRI 370

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAGFLRI 423
           P+   I  R  ++ LQD L  +++ G+       +V  L  ++DP  IAA  L++
Sbjct: 371 PTRSQIEARRLEK-LQDELR-EALTGERMASFLPIVRELSEEYDPHAIAAAALQM 423


>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
 gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/345 (35%), Positives = 188/345 (54%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +Q   +   L ++D+L  AQTG+GKT +F + +   L   
Sbjct: 7   NITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHL-QM 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   +      AL + PTRELA+Q+   +      T V   V  GGV+   +   L  G 
Sbjct: 66  NKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K+ VR++I  ++     I+     V   ++   +V+IL+    +
Sbjct: 186 SATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSILQKSEDQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  +  K+L +      A+ G  SQ  R  AL   + G+ RV +ATD+AA
Sbjct: 246 SVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 350


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 190/349 (54%), Gaps = 13/349 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------RFSPAS 73
           Y   T +Q+  +   L  KD++  AQTGSGKT AF L + + ++ +ND       F    
Sbjct: 290 YDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGII-KNDLIEGGSGFGGPQ 348

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ + PTREL  Q+  E     + T V   V  GG SV  + R+L+ GAH+VVGTPG
Sbjct: 349 YPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGTPG 408

Query: 134 RLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK--RRMLMFSAT 188
           RL D I GKG +N+S +K ++LDEAD MLD+GF  +I  ++ +   P+K  R+ LMFSAT
Sbjct: 409 RLLDFI-GKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTLMFSAT 467

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LAK +  + V V +      +SDI      V   ++   +V IL   G    +
Sbjct: 468 FAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAGTDRTL 527

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+ S       L++  +   ++ G+  Q+ER  AL   + GRA + IAT VAARG+
Sbjct: 528 VFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAPILIATSVAARGL 587

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+P ++ VI+ +L S  +  +HR GRTGR G  G +      ++ +  E
Sbjct: 588 DIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDKE 636


>gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
 gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
          Length = 485

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|255621484|ref|XP_002540211.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223498154|gb|EEF22172.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 151

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 114/150 (76%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     +   I +ALS+RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEINGVVPAIAKALSKRGYTTLTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL +NDRF PA+ PLAL IAPTRELA+QV RELEWLY  TG ++  C+GG+ +  ERR 
Sbjct: 61  TLLEDNDRFEPAAEPLALVIAPTRELALQVKRELEWLYEMTGALIVSCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
           L+ GAHIVVGTPGRLCDHIR K L++S LK
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRKALDMSALK 150


>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
 gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
          Length = 480

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 204/382 (53%), Gaps = 9/382 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L     +  S 
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373

Query: 368 V--WEPAPSV--EAIRERDAQR 385
           +  +EP P+   E I++R  Q+
Sbjct: 374 IAGFEPDPNAKPEPIQQRRGQQ 395


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y +   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 70  RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 191/339 (56%), Gaps = 8/339 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS  G+   T++Q+  +   L+ +D++  AQTG+GKT AFG+ L        +R  
Sbjct: 13  IVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPLI-------ERMD 65

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             S  +  + + PTRELAVQV  E+  +     +      GG  + R+ + L+    I+V
Sbjct: 66  ETSGNIQGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQIKALKKRPQIIV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR  DH+R + + +  ++ VVLDEADEML++GF DDI+ IL   P+ R+ L+FSAT+
Sbjct: 126 ATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPESRQTLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  +A+ +  +   + + ++     +I    + VA   + + +  +L  H  + AI+
Sbjct: 186 PRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRLLDIHSPELAII 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V   ++ L +  +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D
Sbjct: 246 FGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVLVATDVAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  V + ++  + E+ +HR GRTGRAG+ G+++  +
Sbjct: 306 ISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFV 344


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 187/348 (53%), Gaps = 11/348 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAENDRFSPASA 74
           Y   T +Q+  +   L  KD++  AQTGSGKT AF L      + + L+     F     
Sbjct: 310 YDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGIIKNDLIEGGSGFGGPQY 369

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ + PTREL  Q+  E     + T V   V  GG SV  + R+L+ GAH+VVGTPGR
Sbjct: 370 PAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARELEKGAHVVVGTPGR 429

Query: 135 LCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK--RRMLMFSATI 189
           L D I GKG +N+S +K ++LDEAD MLD+GF  +I  ++ +   P+K  R+ LMFSAT 
Sbjct: 430 LLDFI-GKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPEKGQRQTLMFSATF 488

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I  LAK +  + V V +      +SDI      V   ++   +V IL   G    +V
Sbjct: 489 AAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLVEILNQAGTDRTLV 548

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ S       L++  +   ++ G+  Q+ER  AL   + GRA + IAT VAARG+D
Sbjct: 549 FLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAPILIATSVAARGLD 608

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           +P ++ VI+ +L S  +  +HR GRTGR G  G +      ++ +  E
Sbjct: 609 IPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDKE 656


>gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 574

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P ++  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 15  FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
            +  +     P +  +    L + PTRELA+QV  +    Y +   G+  A  +GG+   
Sbjct: 74  RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 127

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++ 
Sbjct: 128 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 187

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
            PK+R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I  +++L A   + +  
Sbjct: 188 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 246

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G
Sbjct: 247 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + RV +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G + F +  + +
Sbjct: 307 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 365

Query: 354 R 354
           R
Sbjct: 366 R 366


>gi|33602957|ref|NP_890517.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 423

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/317 (36%), Positives = 182/317 (57%), Gaps = 2/317 (0%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97
           ++ +AQTG+GKT AF L +   L+   N   SPA  P+ AL + PTRELA QV   ++  
Sbjct: 1   MMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRY 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T +  AV  GGV +  ++  L+ G  ++V TPGRL DH+  K +N+S +  +VLDEA
Sbjct: 61  SLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEA 120

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF  D+E I+   P +R+ L+FSAT S  I  L ++Y    V + +A+ N    
Sbjct: 121 DRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATAD 180

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +   A  +    +  A+V++++  G K  IVF +T+   +R  + L     +  ++ G+
Sbjct: 181 TVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGD 240

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q +R  AL+  + G   V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGR
Sbjct: 241 KTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 300

Query: 338 AGRKGMSVFVIPQNMQR 354
           AG  G ++ +   + +R
Sbjct: 301 AGASGEAIALFTADEER 317


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y +   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 70  RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 188/334 (56%), Gaps = 9/334 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           A+ + GY   T VQE  +   L  +D++  AQTG+GKT AF L +   L L +  R    
Sbjct: 76  AIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHKLTLLKRPRVR-- 133

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               AL + PTRELA+Q+    +  Y +   +  VC+ GG     +   L+ GA I+V T
Sbjct: 134 ----ALVLTPTRELAIQIFDNFKK-YGRYLHLRTVCLYGGAKRGPQIGALRRGADILVAT 188

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    +++S ++ +VLDEAD MLD+GF  D+  I++S+P KR+ LMFSAT+  
Sbjct: 189 PGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMFSATMEK 248

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA    KD V+V +  EN     ++ + +  +  D+   I ++L     ++AIVF 
Sbjct: 249 EVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVESAIVFT 308

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    + ++ L     + VA+ G+ +Q +R +AL   + G+ RV +ATDVAARG+D+P
Sbjct: 309 RTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAARGLDIP 368

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  V + ++       +HR GRTGRAG  G+++
Sbjct: 369 KLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAI 402


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/363 (34%), Positives = 193/363 (53%), Gaps = 16/363 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G    T +Q   + P L+ +D+L +AQTG+GKT AF L L   L  E  + + A
Sbjct: 14  KALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQRLTLEGPQVA-A 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  ++V TP
Sbjct: 73  NSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVDVLVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S A
Sbjct: 133 GRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFSATFSDA 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA    +D + + ++  N     +    V V    +     ++L+ +  + A+VF  
Sbjct: 193 IRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQALVFAK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAARG+D+ +
Sbjct: 253 TRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAARGLDIEE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           + LV++ +L    E+ +HR GRTGRAG  G ++                +I Q +QRR E
Sbjct: 313 MPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIETLIGQTLQRREE 372

Query: 358 RLF 360
             F
Sbjct: 373 PDF 375


>gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 684

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 223/443 (50%), Gaps = 37/443 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P V+ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +   LL
Sbjct: 91  FEMNPTVV-KALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVERLL 149

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P A+   PTRELA+QV   L  +    G+VV    GGV+   + R L++
Sbjct: 150 KLPSHLIRGRGPAAVIFCPTRELAIQVQDVLCGI--SCGLVVTALYGGVAYANQERVLRS 207

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++    
Sbjct: 208 GVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQNGSV 267

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDR 231
                  + L+FSAT+   + T +    KD   +++  +   R  S I +       S+ 
Sbjct: 268 GAEKPVHQTLLFSATVPEWVHTCS-FIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFSEI 326

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++++ Y GA    +VF +T+      +  +         L G++ Q++R + ++ 
Sbjct: 327 SSMLADLIKVYSGAHGRTLVFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKS 384

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V +  
Sbjct: 385 FRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLYQ 444

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDE 400
              +   ER+ R A +     PAP+ E I +  A+   +D          LF+D  Q  E
Sbjct: 445 PREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMD--QAAE 502

Query: 401 KKMVDVLLAKHDPEKIAAGFLRI 423
                 LL   DP +I A  L +
Sbjct: 503 ------LLKDADPVEILASALAV 519


>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 637

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ GY + T +Q   +   L  +DV+  AQTG+GKT +F L +   L     R   A 
Sbjct: 167 AISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPMLEILADSRAR---AR 223

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ TPG
Sbjct: 224 MPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEVLNRGVDVLIATPG 283

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D     GL ++H   +V+DEAD MLD+GF  DIE I+   P  R+ L+FSAT++P I
Sbjct: 284 RLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNRQTLLFSATMAPTI 343

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +      + +A ++   + I    V+V    +   +  +L+    +NAIVFC+ 
Sbjct: 344 RKLADTFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLKDPALQNAIVFCNR 403

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L +H F   AL G+L Q  R + L+  ++   +V + +DVAARGID+  L
Sbjct: 404 KRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVCSDVAARGIDIGGL 463

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             V + +L  + E+ +HR GRTGRAGR+G +  +
Sbjct: 464 SHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSI 497


>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
          Length = 399

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 190/333 (57%), Gaps = 9/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L      +       AL 
Sbjct: 3   FTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY------FALV 56

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+    + L +  G+  +  +GG+ +  + RDL    H++V TPGR+ DH+
Sbjct: 57  LAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHL 116

Query: 140 -RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
              KG ++ +LK +V+DEAD +LD+ F   ++ IL   P KR   +FSAT++  I  L +
Sbjct: 117 EHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKLQR 176

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
               + VRV ++S+ +   ++    +LV    ++  ++++L     K+ IVF  T A   
Sbjct: 177 ASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQ 236

Query: 259 RFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           R T +LA  L F  V L G+LSQ +R  +L   +  +A + +ATDVAARG+D+P +++VI
Sbjct: 237 R-TALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVI 295

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + ++ ++ +  +HR GRT RAGR G S+ +I Q
Sbjct: 296 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQ 328


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+   Y   T VQ  ++   ++ +D++V AQTGSGKT +FG+ ++  +  E
Sbjct: 10  HVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSDMVEWE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P A+ + PTRELAVQV  ++  +     +      G     +++ +L+   
Sbjct: 70  EKK------PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKT 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI  + L +  +K +++DEADEML+ GF D++E I+   P  R  ++F
Sbjct: 124 HVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y KD +++ I S       I++  + V   ++ + + ++       
Sbjct: 184 SATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREEEKISLLKDVTVVENPD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC T+  V      L +  +    L G L Q++R + ++  + G  R  +ATDVAA
Sbjct: 244 SCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           RGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++ F  P
Sbjct: 304 RGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTP 348


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 15/383 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQQLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEA 377
           R + L       + W  AP   A
Sbjct: 352 RVQALEAAQGQPLKWSRAPLATA 374


>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 186/344 (54%), Gaps = 6/344 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----EN 66
           I +AL     V    +QE  L   L   D++  A+TG+GKT+ FG+ L    ++    + 
Sbjct: 5   ICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPGEPDY 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  +    P AL + PTREL +QV ++L        V +    GGV+   +   L++G  
Sbjct: 65  EELAAPGKPQALVVTPTRELTIQVAKDLTTASTVRTVRILTIYGGVAYEPQLEMLKSGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D      L++SH+K +VLDEADEMLDLGF  D+E IL  +P+ R+ ++FS
Sbjct: 125 VVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           AT+  A+  LA+ + +  + +   S E+ Q      + V  A   D+   +  IL+    
Sbjct: 185 ATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQAEDR 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++FC T+    R T  LA+  F+  A+ G+L+QQ R  AL   R  +  V I TDVA
Sbjct: 245 GRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVLICTDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  VI+     + +  +HR GRTGRAG  G++V  +
Sbjct: 305 ARGIDVEGVTHVINNTCPEDEKAYIHRIGRTGRAGASGIAVTFV 348


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 192/342 (56%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-VYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|313891630|ref|ZP_07825237.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|329122052|ref|ZP_08250660.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
 gi|313119908|gb|EFR43093.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|327466859|gb|EGF12375.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
          Length = 416

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/400 (32%), Positives = 220/400 (55%), Gaps = 14/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ I E L +RG +N   +Q+ ++    + ++++  AQTG+GKT+A+ L L   +  E 
Sbjct: 10  IPE-ISEYLKKRGIINPMPIQKEVIPAIFKGRNIIGRAQTGTGKTLAYLLPLVQRIKKE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                +S+   + +APTREL+ Q+   L        V     IGG ++  + + L+   H
Sbjct: 68  -----SSSTQVIIMAPTRELSRQIYDVLSDFSKLLNVDSVGVIGGRTIENQIQKLKRNPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHIR   ++++ +K VVLDEAD+ML  GFR+DIE ++D +PKKR++LM S
Sbjct: 123 IIVGTPGRLIDHIRKNTIDLTQVKTVVLDEADQMLAAGFREDIEILIDMTPKKRQILMLS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+     LA+ Y K  +  ++ SE    S ++ R      + +   +V  L+      
Sbjct: 183 ATITEESKKLARKYVKAPLIADV-SEKEVASTVEQRIYETTEAGKLKLLVKHLKEMNPYM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           A+VFC+TR         +      VV  L G+++Q +R++ ++       +V +A+D+AA
Sbjct: 242 AVVFCNTREGAYELAGEVYRATHMVVDQLHGDMTQGQRNHVIRQFSKAAIQVLVASDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFRE 362
           RG+D+  +  V + ++ ++ +  +HR GRTGRAG KGM++ +V P++  M R+ E+   E
Sbjct: 302 RGLDVEGVTHVFNYDIPTDLKYYVHRIGRTGRAGTKGMAITYVTPKDAVMLRKLEKSIHE 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
                 ++    V+ +R+   +R +  P      +  E K
Sbjct: 362 TLTR--YDERGRVKKVRQAKPKRRVVTPGMYKPTKKKEHK 399


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 15/383 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVG++L  L   TG+    + V  GG+ + 
Sbjct: 61  LQKLDPALTRAQ------ALVLCPTRELADQVGKQLRKL--ATGIPNMKLVVLTGGMPLG 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAS 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ L+FSAT    I TLA+   KD V + +   +    +ID +   V  + R  A
Sbjct: 173 RCDKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGAD-NAPEIDQQFFEVDPTYRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +  
Sbjct: 232 VAGLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      
Sbjct: 292 CNVLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETA 351

Query: 355 RAERLFREANVSVVWEPAPSVEA 377
           R + L       + W  AP   A
Sbjct: 352 RVQALEAAQGQPLKWSRAPLATA 374


>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           7894]
          Length = 416

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 495

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/330 (34%), Positives = 187/330 (56%), Gaps = 10/330 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L+ KDV+  A+TGSGKT AF L +   LL    R+       A+ + PTRELA Q+  + 
Sbjct: 92  LQGKDVIGLAETGSGKTGAFALPILQALLENPQRY------FAVILTPTRELAYQISEQF 145

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVV 153
           E L A  G+   V +GG+ +  +   L    HI++ TPGRL DH+   KG N+  +K +V
Sbjct: 146 EALGASIGIKCCVIVGGMDMVSQALHLARKPHIIIATPGRLVDHLENTKGFNLKAVKYLV 205

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           +DEAD +L+L F  ++E IL   P++RR  +FSAT++  +  L +   KD V+V ++S+ 
Sbjct: 206 MDEADRILNLDFEVELEKILKVIPRERRTFLFSATMTKKVKKLERASLKDPVKVEVSSKY 265

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
           +    +    + +    +D  +V+IL      + ++FCST  +  R   +L       V 
Sbjct: 266 QTVEKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVP 325

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G++SQ +R  AL   +    ++ I+TDVA+RG+D+P +++V++ ++ ++ ++ +HR G
Sbjct: 326 LHGQMSQNKRLAALNKFKGKNRQILISTDVASRGLDIPHVDVVLNFDIPTHSKDYIHRVG 385

Query: 334 RTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RT RAGR G +V  + Q    + +R E L 
Sbjct: 386 RTARAGRAGKAVTFVTQYDVELYQRIEHLL 415


>gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 477

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 194/348 (55%), Gaps = 4/348 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +P ++ + + E G+ + T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TRLLNQQ-KTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTY 179

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT++  +  LA  +     +V++  E      ++      +  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHASRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   + G   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGILPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAI 347


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 188/350 (53%), Gaps = 8/350 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
           NI + I +A+   GY   + VQE ++   +  KDV+V +QTGSGKT AF + +   +   
Sbjct: 9   NISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIPICEKVDWN 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           EN       AP  L ++PTRELAVQV  +   +     +      G   +  + R L+  
Sbjct: 69  EN-------APQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQARALKQK 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+V GTPGR+ DHI    L++  +K  V+DEADEML++GF   +E ++   PKK+   +
Sbjct: 122 THVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLPKKKVTTL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATIS  I TL + Y    V ++I  +   + +I++    V  ++R   +  +L     
Sbjct: 182 FSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNELLICEKP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F  T+ +V      L    +    + G + Q+ER +A+   R G  R+  ATDVA
Sbjct: 242 ETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRILSATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARGID+ ++  VI+ EL    E  +HR GR+GRAG+ G ++ +  ++  R
Sbjct: 302 ARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDR 351


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 194/344 (56%), Gaps = 7/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+++ GYV+ T +Q   +   L+  DV   AQTG+GKT +F L + + L     
Sbjct: 10  PKVVC-AVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P  L + PTRELA QV    +       + +A+ IGG+    + + L+ GA +
Sbjct: 69  R---ARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLERGADV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGR+ DH     L +++++ +V+DEAD MLD+GF  DI+ I    P  R+ L+FSA
Sbjct: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGA- 244
           T++  +  +++ + ++  R+ + +       I+  + A     S +   +  ++R   A 
Sbjct: 186 TMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIREQDAI 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAI+FC+ +  V+     L +  F V A+ G + Q+ R   L   ++G  ++ +A+D+A
Sbjct: 246 KNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMVASDLA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+PD+  V + ++ + PEN +HR GRTGRAGR G +  ++
Sbjct: 306 ARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLV 349


>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
 gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
          Length = 486

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 195/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     +   T +Q   + P L+ KD++  AQTGSGKT AF + + + L  + 
Sbjct: 74  VPELI-EACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQ 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 133 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   KG  +  L+ +V+DEAD +LD+ F   ++ IL + P K R   +
Sbjct: 187 IIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTTYL 246

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 247 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFIG 306

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDVA
Sbjct: 307 KTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVA 366

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P ++LVI+ ++  + ++ +HR GRT RAGR G SV ++ Q
Sbjct: 367 ARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ 412


>gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 462

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 208/385 (54%), Gaps = 14/385 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L        PA  AP A
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKL-------DPARLAPQA 75

Query: 78  LAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV +EL  L  +   V +    GG +   +   L  GAHIVVGTPGR+ 
Sbjct: 76  LLLCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGAHIVVGTPGRIQ 135

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    L++S L  +VLDEAD M+D+GF DDI  I    P KR+ L+FSAT    I  L
Sbjct: 136 DHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTLLFSATYPDNIRKL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  + ++   V + +++   S I+     +  ++R +A+  +L +    + + FC+T+  
Sbjct: 196 SARFLRNPAEVKVEAQH-DASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLAFCNTKIR 254

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L       +AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  V
Sbjct: 255 SHDLVERLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +++ + E  +HR GR+GR  +KG+++ +   +  R A  + +     + W     ++
Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTWG---DLK 371

Query: 377 AIRERDAQRILQDPLFLDSIQGDEK 401
           ++R + A R L+ P+    IQG +K
Sbjct: 372 SLRPK-ADRPLRAPMVTLCIQGGKK 395


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 8/315 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELE 95
           D++  AQTGSGKT AF L + + ++ ++     FS    PLAL ++PTRELA Q+  E  
Sbjct: 269 DLMACAQTGSGKTAAFLLPIITNMITQSGCVSCFSVVQEPLALIVSPTRELASQIQNEAR 328

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                T +   V  GG SV  + R++QNG  I+V TPGR+ D I    + +  LK ++LD
Sbjct: 329 KFCRNTSLRPVVIYGGTSVSHQTREVQNGCSILVATPGRMHDFIGRGYIGLGKLKYLILD 388

Query: 156 EADEMLDLGFRDDIEFILDS---SPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           EAD M+D+GF  +I+ ++D     PK +R+ LMFSAT  P I   A+ Y  D + + +  
Sbjct: 389 EADRMVDMGFGPEIQKLIDHPHMPPKGERQTLMFSATFPPEIQEKARMYLNDYLFLTVGR 448

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ 270
                SDI+ R + V   ++   ++ ILR     +  +VF  T+ +      +L++  F 
Sbjct: 449 VGGAASDIEQRVLSVKQYEKREKLMEILRDQNEDDRTLVFVETKRNADFLATLLSQSDFH 508

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             ++ G+  QQER  AL+  + GRA V +AT VAARG+D+P ++ V++ +L S+ +  +H
Sbjct: 509 ATSIHGDRQQQEREEALRDFKIGRAPVLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVH 568

Query: 331 RSGRTGRAGRKGMSV 345
           R GRTGR G  G S 
Sbjct: 569 RIGRTGRVGNTGRST 583


>gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
 gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 188/338 (55%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFS 70
           +A+S +GY   T +QE  +   L  KDVL SAQTG+GKT  F L L   LL++    R  
Sbjct: 14  KAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQ-LLSQTPPLRNR 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A   L + PTRELA QV + ++       +   V  GGV+   +   L+NG  ++V 
Sbjct: 73  PVRA---LILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRNGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      L+++ ++ +VLDEAD MLD+GF  DI+ I+   PK+R+ L+FSAT S
Sbjct: 130 TPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQTLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA  + K+ V V    EN     I+ +   VA   + + ++ ++     +  +VF
Sbjct: 190 REIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKLISEGNWEQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K L        A+ G  SQ  R+ AL   + G  +V +ATD+A+RG+D+
Sbjct: 250 SRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLVATDIASRGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL +  E+ +HR GRTGRAG  G++V ++
Sbjct: 310 PLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLV 347


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 202/371 (54%), Gaps = 35/371 (9%)

Query: 19  GYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLAL-------------ASTLL 63
           GY NLT +Q EAI  P +R+  D+L SAQTG+GKT AF L +             ++T  
Sbjct: 20  GYKNLTPIQQEAI--PVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTST 77

Query: 64  AEN---DRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHR 116
            EN   ++ +   A  AL + PTRELA QV   +    ++L  K+GVV     GG  +  
Sbjct: 78  DENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVY----GGGKMAS 133

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G  ++V TPGRL +H+  + +++S +K +VLDEAD MLD+GF  DIE +L + 
Sbjct: 134 QTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAV 193

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             K + LMFSAT S  + +LA    K    ++++ EN     I      V    +   + 
Sbjct: 194 KHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELLS 253

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF  T+ S +   K L     +     G+ +Q  R+ AL+   +G+ R
Sbjct: 254 ELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVR 313

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP------- 349
           V +ATDVAARG+D+PDL  V++  L   PE+ +HR GRTGRAG+ G ++ ++        
Sbjct: 314 VLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFL 373

Query: 350 QNMQRRAERLF 360
           +N+++  ER F
Sbjct: 374 ENIEQLIERKF 384


>gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
 gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC
           10247]
 gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
 gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
          Length = 485

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|332993053|gb|AEF03108.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           sp. SN2]
          Length = 466

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 198/345 (57%), Gaps = 14/345 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  R +  LT +QE  + P ++ KD++ S++TGSGKT+AF +   + ++++  +      
Sbjct: 16  LESRNFTELTEIQEKSMLPAIQGKDIIASSKTGSGKTLAFLIPAINRMMSQ--KALSRQD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA QV  E + +     +   + +GG + + + + L+   HI+VGT GR
Sbjct: 74  PRALILAPTRELAKQVFIEAKTMCTGLNLSCTLVVGGENYNDQVKALRRNPHIIVGTAGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192
           + DH++ K + ++ L+ ++ DEAD MLDLGF + +  I + ++ +KR+ ++FSAT+ S  
Sbjct: 134 VADHLKDKSIFLNGLELLIFDEADRMLDLGFSEQLNMINEFANHRKRQTMLFSATLDSIE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-----A 247
           +  +     K AVRV++      H DI  +       +  +A++    +H   N     A
Sbjct: 194 LNYMTARLTKAAVRVSVGDSTAHHGDIQQQCFFADNIEHKDALL----HHEISNRTYNQA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +TR    R T +L +   + +AL G+L Q +R+  +     G+  V + TDVA+RG
Sbjct: 250 IVFTATREDTDRLTTMLNKDKLEAIALRGDLPQNQRAAIMSEFARGQHSVLVTTDVASRG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +DL  + LVI+ +L  N +  +HR GRTGRAG+KG +  FV P++
Sbjct: 310 LDLSKVGLVINFDLPKNADEYIHRIGRTGRAGQKGEAASFVGPRD 354


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     Y   T +Q   + P L  KD++  AQTGSGKT AF + + + L  + 
Sbjct: 113 VPELI-EACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPILNQLWHDQ 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L    GV     +GG+++  + RDL    H
Sbjct: 172 QPY------YACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQARDLMRKPH 225

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P + R   +
Sbjct: 226 IIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 285

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 286 FSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLIYLLNEFLG 345

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K AIVF  T+A+  R   +     F   AL G+L+Q +R+ AL + + GR  + +ATDVA
Sbjct: 346 KTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRSILVATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 406 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 451


>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           112]
          Length = 419

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           14]
 gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           9]
          Length = 414

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/339 (36%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N    
Sbjct: 12  ILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y +   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 70  RANQVRALILTPTRELAAQV-QENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     ++       +  +   +V +++    K  +V
Sbjct: 189 SDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLV 347


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 185/340 (54%), Gaps = 3/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ E+GY   T +QE  +   L  +D L  AQTG+GKT AF + +   L ++
Sbjct: 7   NLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPILQNL-SK 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N    P     AL + PTRELA+Q+   +        +   V  GGV    +   L+ G 
Sbjct: 66  NK--IPNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALKKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    +++ +L+  VLDEAD MLD+GF  D++ ++   P++R+ L F
Sbjct: 124 DILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA +   + V+V +   +     I      V   ++ N + +IL+   + 
Sbjct: 184 SATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILKNDISD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    + ++ L +      A+ G  SQ  R NAL   + G+ RV +ATD+AA
Sbjct: 244 SVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L+ VI+ ELS   E  +HR GRTGRAG +G S+
Sbjct: 304 RGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSI 343


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 184/332 (55%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L++ GY   T +QE  +   ++ +D++  AQTG+GKT+AF   +   L + N   +P  
Sbjct: 21  SLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRL-SRNASPAPVR 79

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L +APTRELA Q+        A   + V +  GG  +  + R L+ GAHI+V TPG
Sbjct: 80  GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPG 139

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + +++  ++ ++LDEAD+MLDLGF   +  I  + P KR+ L FSAT+  A+
Sbjct: 140 RLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAV 199

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA  + ++   V++A        I+ R   V   ++ + ++  +R    ++AIVF  T
Sbjct: 200 ESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRT 259

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K LA+     VA+ G  SQ +R  AL+  + GR  + +ATD+AARGI +  L
Sbjct: 260 KHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDAL 319

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L   PE  +HR GRT RAG  G+++
Sbjct: 320 THVINYDLPDVPEQFVHRIGRTARAGNSGVAI 351


>gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis]
          Length = 421

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/369 (36%), Positives = 200/369 (54%), Gaps = 11/369 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FS 70
            E  + R + + + +Q   L   L  +D++  A TGSGKT+AFGL     + A+++   +
Sbjct: 15  AELHATRSFQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQSEAGVA 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL IAPTRELA+Q+   LE   ++ G+      GGV    +   L+ GA IVV 
Sbjct: 75  TGKKPVALVIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKGAAIVVA 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +      +  +  +VLDEAD MLDLGF   I  I   +   R+ LMFSAT  
Sbjct: 135 TPGRLEDLLEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWP 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN- 246
           PAI  LA  +    VRV I S++   S      V+  + D  RD  +  +L RYH +++ 
Sbjct: 195 PAIRKLASEFLCHPVRVTIGSQDLAASH-SVTQVIEVIEDRARDGRLHELLQRYHASRSN 253

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F   +    R  ++L    ++  A+ G++SQ +RS+A++  + G   + +ATDVAA
Sbjct: 254 RVIIFVLYKKEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL---FR 361
           RG+D+PD+E V++       E+ +HR GRTGRAG+ G +  F +  N + RA  L    R
Sbjct: 314 RGLDIPDVEAVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTFFVGNNDKPRAGELINVLR 373

Query: 362 EANVSVVWE 370
           EA  +V  E
Sbjct: 374 EAKQTVPEE 382


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 198/375 (52%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   
Sbjct: 94  ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLG 153

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  
Sbjct: 154 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 212

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FS
Sbjct: 213 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 272

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++
Sbjct: 273 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 332

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AAR
Sbjct: 333 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 392

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362
           GID+P +  V++ +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R 
Sbjct: 393 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 452

Query: 363 ----ANVSVVWEPAP 373
                +  V   PAP
Sbjct: 453 KLSIKDAPVKLAPAP 467


>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
 gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
          Length = 383

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 199/346 (57%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+   G+ ++T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
             +  R+     P AL +APTRELA+Q+  + + L   + + V   +GGV   +++  L 
Sbjct: 69  PIQEQRYR--GEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKAQLD 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           +    I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 KKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA SD+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    +  ++F + R  V +    L    ++VV LSGE++Q +R   L   ++G+  + I
Sbjct: 247 RDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGQHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSI 352


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+ + GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-IYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSA
Sbjct: 133 LVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     +  
Sbjct: 193 TFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAGAWEQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AARG
Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 313 LDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 433

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 190/343 (55%), Gaps = 6/343 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + EA     +   T +Q ++L      +D++  A+TGSGKT AF L +   LL +   
Sbjct: 48  ETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQGLLRK--- 104

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P     AL + PTRELA Q+ + ++ L    G      +GGV    +   L    H+V
Sbjct: 105 --PVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNPHVV 162

Query: 129 VGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH++  KG N++ ++ +VLDEAD ML + F +++  ILD+ P++R+ L+FSA
Sbjct: 163 IATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQTLLFSA 222

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++++ +    +    + +    +D  +  ++  H  ++ 
Sbjct: 223 TMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYLINEHAGQSI 282

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T  +V R   +L    F  V L G++ Q +R  ALQ    G   + + TDVA+RG
Sbjct: 283 LVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTILLCTDVASRG 342

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +DLP ++LVI+ +L  + +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 343 LDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQ 385


>gi|237799048|ref|ZP_04587509.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021902|gb|EGI01959.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 332

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 188/327 (57%), Gaps = 12/327 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +         
Sbjct: 15  PNIVA-AVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILH------- 66

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
           R  P+   P AL +APTRELA+QV    E  YAK   GV V    GG  +  + + ++NG
Sbjct: 67  RIDPSKREPQALILAPTRELALQVATAFET-YAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHR 331
           ARG+D+P +  V + ++  +PE+ +HR
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHR 332


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 19/386 (4%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE +   P ++ +A++  GY   T +QE  +   L  KD++ SAQTG+GKT AF L    
Sbjct: 3   FETLQLSPSIL-KAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPALQ 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            L       SP     P  L + PTRELA QV   +    +++  ++G +    +GG+  
Sbjct: 62  RLSTP----SPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAI----LGGMPY 113

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L     ++V TPGRL DH+    +N+S L+ ++LDEAD MLD+GF DD++ I  
Sbjct: 114 REQLQLLSQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAA 173

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDN 233
           ++P  R+ L+F+AT+   +  LA+   KD VR+ IA +   H  I+ R  +V  L  ++ 
Sbjct: 174 AAPANRQTLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNR 233

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +++       AI+F +T+       + L        AL G+++Q  R+  +  MR G
Sbjct: 234 MLQHLIADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRG 293

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + R+ +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++  +  N  
Sbjct: 294 KVRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDI 353

Query: 354 RRAERLFREANVSVVWEPAPSVEAIR 379
              +R+ R    ++     P +E  R
Sbjct: 354 NYLDRIERYTGQTLPLHVIPGLEPTR 379


>gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 494

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 180/316 (56%), Gaps = 6/316 (1%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIAPTRELAVQVGREL 94
           D++  A+TG+GKT+AFG+ +   +    D      +    P AL + PTRELA+QV +++
Sbjct: 25  DLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI 84

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
               +  G  V    GGV    +   L+ G  +VVGTPGRL D  + K L++SH++ VVL
Sbjct: 85  STAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVL 144

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEADEMLDLGF  D+E ++  +P  R+ ++FSAT+   I  LA++     V V     + 
Sbjct: 145 DEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADT 204

Query: 215 QHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
           Q +  D +  +      D+   I  IL+ +  +  I+FC T+ +  R +  L +  F+  
Sbjct: 205 QATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTR 264

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G+L+Q  R  AL+  R G A + +ATDVAARGID+  +  VI+ E   + +  +HR 
Sbjct: 265 AIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRI 324

Query: 333 GRTGRAGRKGMSVFVI 348
           GRTGRAG KG++V ++
Sbjct: 325 GRTGRAGAKGVAVTLV 340


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 180/337 (53%), Gaps = 8/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ G+   T +Q   +   L  +D+L  +QTG+GKT AF L L        DR  P 
Sbjct: 20  QLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLM-------DRIDPE 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   ++    +  + +    GG S+ R+ R L+ G  IVVGTP
Sbjct: 73  GDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D I  K L +  ++ VVLDEADEML +GF DD++ IL  +P  R+   FSAT+   
Sbjct: 133 GRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACFSATMPRE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  L   +  D   V +       + I+ +   V     +  A+  IL     ++AI+F 
Sbjct: 193 IKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDPESAIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ + +  T  L E    V    G LSQ +R   +   RDG+ ++ +ATD+AARG+D+ 
Sbjct: 253 RTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIAARGLDVN 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L  V++ +L  N E  +HR GRTGRAG+ G ++ ++
Sbjct: 313 NLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALV 349


>gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 521

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 11/353 (3%)

Query: 2   KIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K FE    IP++  EA     Y   T +Q   +   L ++D++  AQTGSGKT AF L +
Sbjct: 75  KTFEELGLIPELC-EACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPV 133

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L  +   F          +APTRELA Q+ ++ + L +  GV  AV +GG+ +  + 
Sbjct: 134 LQSLWNDPKPF------FCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQA 187

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HI+V TPGRL DH+   KG ++ +LK +++DEAD +LD+ F   I+ IL   P
Sbjct: 188 IALSKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIP 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++RR  +FSAT++  +  L +      V+V ++++      +    +     ++D  +V 
Sbjct: 248 RERRTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYMFFPFKNKDAYLVY 307

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     K+ I+F  T    +R + +L    F  + L G+LSQ  R ++L   + G   +
Sbjct: 308 LVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 367

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +ATDVA+RG+D+P ++ VI+ +L +N ++ +HR GRT RAGR G +V ++ Q
Sbjct: 368 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQ 420


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
 gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
          Length = 441

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 441

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 196/354 (55%), Gaps = 12/354 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L + G    T VQ   ++     +DV+  AQTG+GKT+AF       LL   
Sbjct: 8   ISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAF-------LLPIF 60

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SP  SA  AL + PTRELA+Q+  +   L     + +    GG  +  +++ L+   
Sbjct: 61  ENISPTLSAVQALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLRGST 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+++ TPGRL D I+ K +++  LK+ VLDEAD+ML +GF++D+E IL ++PKKR+ML F
Sbjct: 121 HLIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQMLCF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SATISPA+  LA  Y  +   + I+++ ++ +  +    +V  +DR     +   L+   
Sbjct: 181 SATISPAVKKLAYRYMTNP--LTISTKKKEVTLENIEQFVVETTDRKKLEDLCTALKQDN 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F  T+  V      L    F    L  +L+Q +R   ++  R+G  +  +ATDV
Sbjct: 239 PFMAIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDV 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           A+RG+D+  +  + + ++  NPE+ +HR GRTGRAG +G +     +  +R+ E
Sbjct: 299 ASRGLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLE 352


>gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 494

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 180/316 (56%), Gaps = 6/316 (1%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASAPLALAIAPTRELAVQVGREL 94
           D++  A+TG+GKT+AFG+ +   +    D      +    P AL + PTRELA+QV +++
Sbjct: 25  DLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI 84

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
               +  G  V    GGV    +   L+ G  +VVGTPGRL D  + K L++SH++ VVL
Sbjct: 85  STAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVL 144

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEADEMLDLGF  D+E ++  +P  R+ ++FSAT+   I  LA++     V V     + 
Sbjct: 145 DEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADT 204

Query: 215 QHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
           Q +  D +  +      D+   I  IL+ +  +  I+FC T+ +  R +  L +  F+  
Sbjct: 205 QATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTR 264

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G+L+Q  R  AL+  R G A + +ATDVAARGID+  +  VI+ E   + +  +HR 
Sbjct: 265 AIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRI 324

Query: 333 GRTGRAGRKGMSVFVI 348
           GRTGRAG KG++V ++
Sbjct: 325 GRTGRAGAKGVAVTLV 340


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 188/343 (54%), Gaps = 14/343 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  T+     +        AL ++PT
Sbjct: 64  SAIQQRAIAPILKGRDVIAQAQSGTGKTATFSISVLQTIDTTRRQTQ------ALILSPT 117

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   +  L     V    CIGG S+  + R L +G H+V GTPGR+ D I+ + 
Sbjct: 118 RELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLDHGQHVVSGTPGRVFDMIKRRN 177

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K ++LDEADEML  GF++ I  +    P   ++++ SAT+   +  +   +  D
Sbjct: 178 LQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPPSTQVVILSATLPHDVLDMTSKFMTD 237

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            VRV +  +      I  +   VA+   +   + + ++        A++FC+TR  V   
Sbjct: 238 PVRVLVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 295

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ + E  F V A+ GE+ Q+ER   +Q  R G +RV I TDV ARGID+  + LVI+ +
Sbjct: 296 TEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRVLITTDVWARGIDVQQVSLVINYD 355

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           L SN EN +HR GR+GR GRKG+++  +     N+ R  E+ +
Sbjct: 356 LPSNRENYIHRIGRSGRFGRKGVAINFVKNDDVNILRDIEQYY 398


>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
 gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
          Length = 485

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
          Length = 891

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 183/348 (52%), Gaps = 10/348 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
             EAL   G +N   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    D   
Sbjct: 55  TAEALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEA 114

Query: 68  -RFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R  P   + AP AL + PTREL  QV  +L        V V    GG +   +   L+ 
Sbjct: 115 GRARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALRK 174

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++VGTPGRL D    K L++S ++A+VLDEADEMLDLGF  D+E I+   P KR+ +
Sbjct: 175 GVDVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLLPAKRQTM 234

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+  A+  LA+ Y      +   +   E    ++I  R       D+   +  IL+
Sbjct: 235 LFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSRILQ 294

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   A++FC T+ + +     LA   F   A+ G+L Q  R  AL+  R+G+  V + 
Sbjct: 295 AEGRGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVC 354

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG  G +V ++
Sbjct: 355 TDVAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLV 402


>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 540

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 180/332 (54%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E  +V  T +Q   +   L  KD++  AQTG+GKT AFGL +   L     R  P S
Sbjct: 16  ALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILDHLSRNPRRIEPRS 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L ++PTREL+ Q+   L+       +   + IGGV + R+ R LQ G  ++V TPG
Sbjct: 76  CRV-LILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQIRALQRGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    L +  ++  VLDEAD+MLD+GF   I+ I+   P KR  L FSAT+  AI
Sbjct: 135 RLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPHKRHSLFFSATMPSAI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +  ++ V V +    +    +D R + V    +   +  +L       A+VF  T
Sbjct: 195 ADLAASMLRNPVTVAVTPVAKTADRVDQRVIFVEKPAKAKMLAEVLSTEEVDRALVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  +VLA    +  A+ G  SQ +R   L   R+G  R  +ATD+AARGID+  +
Sbjct: 255 KHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTLVATDIAARGIDVTGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L + PE+ +HR GRT RAGR+G+++
Sbjct: 315 SHVINYDLPNVPESYVHRIGRTARAGREGIAI 346


>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 437

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 185/323 (57%), Gaps = 7/323 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   L   L  +D++   +TGSGKT AFGL L + L  +  R         L + P
Sbjct: 1   MTPIQAQSLPIILAGQDIIAQGKTGSGKTAAFGLGLLNNLNVKRFRVQ------TLVLCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L  A   + V    GG+    +   L++GAHI+VGTPGR+ +H+R 
Sbjct: 55  TRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVEEHLRK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L++ +L  +VLDEAD ML++GF+D I+ ++D +PK+R+ L+FSAT    I ++A +  
Sbjct: 115 GNLSLDNLNTLVLDEADRMLEMGFQDAIDAVIDCAPKQRQTLLFSATYPTQIASIANSIM 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
                V + + +   S   +   +    +R +A+  +L  H  ++A++FC+T+       
Sbjct: 175 NKPAMVKVEATHDNSSISQHFYKVDNNEERMDAVRLLLAKHHPESAVIFCNTKREAQEVA 234

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +  F  +AL G+L Q+ER   L  + +    + +ATDVAARG+D+  L+ VI+  L
Sbjct: 235 DTLVDEGFSALALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAVINYHL 294

Query: 322 SSNPENLLHRSGRTGRAGRKGMS 344
           + + E  +HR GRTGRAG KG++
Sbjct: 295 ARDTEVHVHRIGRTGRAGSKGIA 317


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 187/347 (53%), Gaps = 13/347 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITRLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     RV IA +      I+   V+   S +D         +  ++ 
Sbjct: 187 TMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEKRRVLRELIN 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G   KNAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   RDG  ++ 
Sbjct: 247 QEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAI 353


>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           NCTC 13177]
          Length = 430

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 480

 Score =  201 bits (510), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 134/384 (34%), Positives = 206/384 (53%), Gaps = 13/384 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +     T  AE+   
Sbjct: 17  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 75  NAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 135 ATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 195 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 254

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 255 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTLQVLVATDIAARGID 314

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 315 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 374

Query: 366 SVV--WEPAPSV--EAIRERDAQR 385
            V+  +EP P+   E I++R  Q+
Sbjct: 375 EVIAGFEPDPNAKPEPIQQRRGQQ 398


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 194/342 (56%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F   +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHESFK-LYARDLKFVSACIFGGVGMNPQVQAMSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++     + 
Sbjct: 192 ATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLV 353


>gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 415

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 198/373 (53%), Gaps = 9/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSP 71
           A+SE+GY   T VQ+  +   L  +DV+  AQTG+GKT  F L L   L   A+     P
Sbjct: 15  AVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFTLPLLELLEEHAQGKGRRP 74

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A   L + P RELA QVG  +E       +   V  GGV ++ +   L++G  I+V T
Sbjct: 75  VRA---LVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEKLRHGVDILVAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  K L++SH++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S 
Sbjct: 132 PGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHERQNLLFSATYSQ 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +      ++ +A  N     +      V  + +   + +++  +  +  +VF 
Sbjct: 192 EIKRLASDLLNQPEQIEVARRNTAAELVSQVVYPVDKARKRELLSHMIGANNWRQVLVFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ 
Sbjct: 252 RTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVRVLVATDIAARGLDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ EL + PE+ +HR GRTGRAG +G +V ++      + R  ERL  R+    V
Sbjct: 312 QLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLLRDIERLLKRKITEKV 371

Query: 368 VWEPAPSVEAIRE 380
           +    P  +A R+
Sbjct: 372 LPGYEPGTQASRQ 384


>gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 574

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P ++  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 15  FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
            +  +     P +  +    L + PTRELA+QV  +    Y +   G+  A  +GG+   
Sbjct: 74  RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 127

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++ 
Sbjct: 128 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 187

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
            PK+R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I  +++L A   + +  
Sbjct: 188 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 246

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G
Sbjct: 247 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + RV +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G + F +  + +
Sbjct: 307 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 365

Query: 354 R 354
           R
Sbjct: 366 R 366


>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 433

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 202/380 (53%), Gaps = 21/380 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A    G+   T +Q A +   L  +DV+  A TGSGKT AF + +   LL +  R  
Sbjct: 54  LCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRI- 112

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  + +AP+REL  Q+  +   L +   + V V IGGV +  +   L    H++V 
Sbjct: 113 -----YCVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVA 167

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           +PGRL DH+   KG ++S +K +V+DEAD +L   F ++++ I+ + P +R+  +FSAT+
Sbjct: 168 SPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATM 227

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  ++ L K   KD + V +  +     ++D R +LV    +   +  +L Y+  + AIV
Sbjct: 228 TKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIV 287

Query: 250 FCSTRASVSRFTKVLAEHLFQV---VALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           FC T     R    L    F     V L G+++Q +RS ALQ+ + G   + +AT+V  R
Sbjct: 288 FCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGR 347

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR-- 361
           G+DLP +ELVI+ ++    ++ +HR GRT RAGR G+++ V+ Q    + +R E      
Sbjct: 348 GLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKK 407

Query: 362 -EANVSVVWE-----PAPSV 375
            E   +++W+     P+P V
Sbjct: 408 LEEFTTLLWQSMLSVPSPYV 427


>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
 gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
          Length = 485

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
          Length = 467

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 176/315 (55%), Gaps = 9/315 (2%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
           +L  AQTG+GKT AFG+ L   ++ +           +L +APTRELA+QV  +L     
Sbjct: 3   ILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSR 55

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             GV V    GG+ + R+ + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADE
Sbjct: 56  GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 115

Query: 160 MLDLGFRDDIEFILDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           M+++GF DD+ FI+D  P  +R+ ++FSAT+  AI  L + + K    +   +       
Sbjct: 116 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 175

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I+    +V   ++ +   N L  H  + AIVF  T+  V   T  L    ++   L G++
Sbjct: 176 IEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDI 235

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q +R   L+  ++ +  + +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRA
Sbjct: 236 TQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA 295

Query: 339 GRKGMSV-FVIPQNM 352
           G++G++V FV P  M
Sbjct: 296 GKEGIAVTFVNPIEM 310


>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           B7210]
          Length = 427

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 372

Query: 367 VV--WEPAPSV--EAIRER 381
           V+  +EP P+   E I+ R
Sbjct: 373 VIPGFEPDPNAKPEPIQRR 391


>gi|166710339|ref|ZP_02241546.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 429

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 207/386 (53%), Gaps = 16/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P +   AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L    L  
Sbjct: 11  QLPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ- 69

Query: 66  NDRFSPASAPLALA---IAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRD 120
                P  AP  L    + PTREL  QV + L  L A    G+ +    GG +++ +   
Sbjct: 70  ----VPEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRGLKIVAATGGEAINPQLMA 125

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IV+ TPGRL D +    L +S ++ +VLDEAD +LDLGF  +++ IL   P +R
Sbjct: 126 LRGGADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAELDRILALLPAQR 185

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++ SAT  PAI +LAK   +D +R+ I +       I   A+ V    R   + ++L+
Sbjct: 186 QSVLVSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQHAIAVDAGQRTQLLRHLLQ 245

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF ++R +  +  + L++   + + L GELSQ  R   L+  +    +V +A
Sbjct: 246 EHAWPQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVA 305

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR----- 354
           TD+AARGID+  L  V++ +L  +  +  HR GRT RAG  G ++ FV  +  Q+     
Sbjct: 306 TDLAARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIE 365

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380
           + + L    +V   +EP+P+  + R+
Sbjct: 366 KRQGLRVPTSVIEGFEPSPAEASARD 391


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 11/379 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY   + +Q   +   L   D+L  AQTG+GKT AF L L S       R +P 
Sbjct: 21  KAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLS-------RINPK 73

Query: 73  SAPLAL-AIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                L  +APTRELA+QV    +  YA+      V    GG+S   + R L+ G  +VV
Sbjct: 74  DKNTQLLVLAPTRELAIQVSEAFQT-YARNIPDFHVLPIYGGMSYDTQLRQLRRGVQVVV 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +P++R++ +FSAT+
Sbjct: 133 GTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIALFSATM 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +A  +  +   V I ++   ++ I  +   V+   + +A+  IL        I+
Sbjct: 193 PSVIRQVANRHLNNPKEVKIVTKTATNTSITQKYWQVSGLHKLDALTRILEMSEHDGMII 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+     + L        AL+G++SQ  R   ++ ++ G+  + +ATDV ARG+D
Sbjct: 253 FVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVATDVVARGLD 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R     +  
Sbjct: 313 IDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAIERATRQPIER 372

Query: 370 EPAPSVEAIRERDAQRILQ 388
              P+   I  +   R  Q
Sbjct: 373 MQLPTASDINTQRVNRFKQ 391


>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
 gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
          Length = 505

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 132/370 (35%), Positives = 195/370 (52%), Gaps = 7/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPA 72
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L A    +    
Sbjct: 15  AVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNASTAAQAGGK 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV TP
Sbjct: 75  RAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S  
Sbjct: 135 GRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPAKRQNLLFSATFSDE 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +       + +A  N     I  +   V    +   + +++R H     +VF  
Sbjct: 195 IKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHLIREHNWFQVLVFTR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AARGID+  
Sbjct: 255 TKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTLQVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSVV 368
           L  V++ EL + PE+ +HR GRTGRAG  G +V ++    + + R  E+L  RE    V+
Sbjct: 315 LPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIEKLIKREIPQEVI 374

Query: 369 --WEPAPSVE 376
             +EP P+ +
Sbjct: 375 AGFEPDPNAK 384


>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
 gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
          Length = 558

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 182/345 (52%), Gaps = 7/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I EAL  +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L    L   +   
Sbjct: 81  ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 140

Query: 70  --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              PAS +P AL I PTRELA QV  EL    AK  V +    GG +   +  DL+ GA 
Sbjct: 141 DEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL  +   R  ++FS
Sbjct: 201 VVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           AT+  A+  LA+ Y      +       +   +     +V  +   N    +  IL+  G
Sbjct: 261 ATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVSRILQAEG 320

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+ +  V +ATDV
Sbjct: 321 RGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDV 380

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 381 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 201/361 (55%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q+  L   L  KDV+   +TGSGKTVAFGL L   L  +  +      
Sbjct: 19  LTILGYDLMTPIQKLSLPVILSGKDVIGQGKTGSGKTVAFGLGLLQKLDVKLFKLQ---- 74

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             ++ + PTRELA QV  E++ L      + V V  GG+S   +   L++G H+VVGTPG
Sbjct: 75  --SIVLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLRHGVHVVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +S++  +VLDEAD MLD+GF++ ++ I+++ P  R+ L+FSAT    I
Sbjct: 133 RIEEHLRKGTLKLSYINTLVLDEADRMLDMGFQESVDNIIETMPTNRQTLLFSATCLDTI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T + +   +  + V +   N + +   Y   +   ++R  A+  +L  +  ++++VFC+T
Sbjct: 193 TNITQRVMRSPIMVKVPLINERSTIKQYFYKINTDNERMMALRLLLAKYKPESSLVFCNT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +    L  + F  +A+ G+L Q+ER  AL    +    + +ATDVAARG+D+  L
Sbjct: 253 KRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILVATDVAARGLDIDSL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+ +++ + +  +HR GRTGRAG  G++  +       + + L       ++ +  P
Sbjct: 313 DMVINFDIAHDDQVHIHRIGRTGRAGHFGIACTLYSNRETYKLDTLKLGTGDDIILDSLP 372

Query: 374 S 374
           S
Sbjct: 373 S 373


>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 200/379 (52%), Gaps = 15/379 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     R        AL + PTRELA QVG+++  L   TG+     +  V      
Sbjct: 61  LQAIDPSLIRVQ------ALVLCPTRELADQVGKQIRKL--ATGIPNLKLLLLVGGVPLG 112

Query: 119 RDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             L     +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I  
Sbjct: 113 PQLASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAG 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            + K R+ L+FSAT   +I  +A++  ++AV V +   + Q   I +    V  + R  A
Sbjct: 173 RTHKDRQSLLFSATFPDSIRAMARDLLREAVEVTVEGAD-QAPAIRHMFCEVEPAHRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +  
Sbjct: 232 LAGLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+DVAARG+D+ +L  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + 
Sbjct: 292 CNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKT 351

Query: 355 RAERLFREANVSVVWEPAP 373
           RAE +  +    + W+  P
Sbjct: 352 RAEAIEAQMGQPLDWQKTP 370


>gi|328906158|gb|EGG25933.1| DEAD/DEAH box helicase [Propionibacterium sp. P08]
          Length = 686

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 133/365 (36%), Positives = 194/365 (53%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  I  AL++ G      +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 237 VPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAAP 296

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E+ R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + 
Sbjct: 297 REDKR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKK 350

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P+  + L
Sbjct: 351 GVDLVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRL 410

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  A+  L K Y  D V   + S+    S + + A  +   ++   +  I    G
Sbjct: 411 LFSATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVGLMCEIANRSG 470

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF  T+   SR  + L        AL G L+Q  R+  L   +DG   V +ATDV
Sbjct: 471 --HTIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 528

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V +I  + +R   RL+R+A
Sbjct: 529 AARGIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQA 588

Query: 364 NVSVV 368
            V  V
Sbjct: 589 GVKPV 593


>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
 gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
          Length = 447

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L +   LL+++D      
Sbjct: 15  AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ-LLSKHDHAVKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     I+     V    +   +  ++     +  +VF  
Sbjct: 194 IKGLASKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIGEGDWRQVLVFNR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 373

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 374 PGYEPDPTIKA 384


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/420 (32%), Positives = 220/420 (52%), Gaps = 25/420 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   +++Q   +   L  +D+L  AQTG+GKT AF L L S +   +      
Sbjct: 21  KAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLSRIDVTDKTTQ-- 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                L +APTRELA+QV    +  YA+      V    GG+S   + R L+ G  +VVG
Sbjct: 79  ----LLVLAPTRELAIQVSEAFQS-YARNLPDFHVLPIYGGMSYDTQLRQLKRGVQVVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHIR K L +  +KA+VLDEADEML +GF DD+E+IL+ +P  R++ +FSAT+ 
Sbjct: 134 TPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPTRQIALFSATMP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A  +  +   V I ++      I  +   V+   + +A+  IL  +     I+F
Sbjct: 194 AVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLHKLDALTRILEMNEHDGMIIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+A+     + L        AL+G++SQ  R   +  ++ G+  + +ATDV ARG+D+
Sbjct: 254 VRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILVATDVVARGLDV 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367
             +  V++ ++  + E+ +HR GRTGRAGR G ++  +      M +  ER  R+   S+
Sbjct: 314 ERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAIERATRQPIESM 373

Query: 368 VWEPAPSVEAIRERDAQRILQDPL-------FLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               A  + A R    ++ + D +       FL+ +Q  +K+       + DP K+AA  
Sbjct: 374 TLPTASDINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQKE------NEVDPLKMAAAL 427


>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 417

 Score =  200 bits (509), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 129/341 (37%), Positives = 192/341 (56%), Gaps = 10/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+  A++E+GY+  T++Q A +   L+ +D++ SAQTGSGKT AF L L   L       
Sbjct: 15  VLLRAIAEKGYLAPTAIQAAAIPAILQGRDIVGSAQTGSGKTAAFALPLLHQLAQ----- 69

Query: 70  SPASAPL---ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +PA A      L + PTRELA QVG  +  L  Y    V VAV  GGVS++ +  +L+ G
Sbjct: 70  APADAKRRIRGLVLVPTRELAAQVGEAIVSLANYLPQRVKVAVVFGGVSINPQMMNLRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRL D I    L +  +  +VLDEAD +LDLGF +++  IL   P +R+ L 
Sbjct: 130 ADIIVATPGRLIDLIDHNALKLDQVGMLVLDEADRLLDLGFGEELGRILALLPAQRQSLF 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PAI  LA     D +R+ + +  +   +I  RA+ V  S R   + ++ +    
Sbjct: 190 FSATFPPAIEALAAGMLTDPLRIEVEAVKQAEPEIVQRAIEVDPSRRTQLLRHLAQTEKW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+ +       L +   +     GELSQ +R+  LQ  +    +V +ATDVA
Sbjct: 250 SRVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDFKAKLLQVVVATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  L +V++ +L  +  + +HR GRTGRAG  G+++
Sbjct: 310 ARGIDIAQLPVVVNYDLPRSSVDYIHRIGRTGRAGETGIAI 350


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 184/342 (53%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   K+   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAI 347


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 206/374 (55%), Gaps = 20/374 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +G+AL +  +   T++Q    +  L  ++++  AQTGSGKT++F L  A   +   
Sbjct: 113 IPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLP-AVIHINNQ 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +    P+ L + PTRELA+QV + +   +  T  V + CI GG S   + RDL+ G+
Sbjct: 172 PPLNQGDGPICLVLCPTRELAIQV-QSVAGQFGLTTRVRSTCIYGGASKGPQIRDLERGS 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I  + +++  +  +VLDEAD MLD+GF   I  I+D     R++LM+
Sbjct: 231 EIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLMW 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  D +++NI S     SDI     ++ + D      +D  +V +L
Sbjct: 291 SATWPKEVRKLAEDFLTDYIQINIGS-----SDIHANHNILQIVDVCEEYEKDRKLVKLL 345

Query: 240 -RYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               G K    I+FC T+      T+ L +  +  + + G+ SQ ER   L+  R G+A 
Sbjct: 346 EEIMGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKAP 405

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR 355
           + IATDVA+RG+D+PD+  V++ +  ++ E+ +HR GRT RAG  G +  F    N +  
Sbjct: 406 ILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAGNTGTAYTFFTSANGKYA 465

Query: 356 AE--RLFREANVSV 367
           AE  ++  EAN ++
Sbjct: 466 AELLKVMEEANQTI 479


>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 433

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 191/351 (54%), Gaps = 2/351 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A++E GY N+T VQ+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFAPEIL-RAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQKM- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E       S   AL + PTRELA QV   +        + V    GG+ +  + + L+ 
Sbjct: 64  HERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLKQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +HI    L++S+++ +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +       ++   +N   + +      V    +   +  ++    
Sbjct: 184 LFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIGTKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF +TRA   +    L         + GE +Q  R  AL+   +G+ RV +AT+V
Sbjct: 244 WQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 304 AARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
 gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
          Length = 549

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 195/373 (52%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A        S
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVHTS 74

Query: 74  APL-----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             +     AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++R +     +
Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVRDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 375 RTVLPGFEPDPTI 387


>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 694

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 215/402 (53%), Gaps = 23/402 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-A 64
           +I +     L  RG   L  +Q        R KD++  A+TG GKT+AF + +   LL A
Sbjct: 153 DISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEKLLMA 212

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQN 123
                 P   P  L +APTRELA QV  + E L A +  +   CI G + +R + D L+ 
Sbjct: 213 GAGSLKPGRKPRVLVMAPTRELAKQVAADFE-LTAPS--LKTTCIYGGAPYRPQEDALRW 269

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  +VVGTPGRL DH+    L +S  + ++LDEAD+MLD+GF++++E + ++  ++    
Sbjct: 270 GVDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQG 329

Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
           R+ML+FSAT+ P +  + K Y K D V +++  E   +   D+++  +    + R + I 
Sbjct: 330 RQMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTIN 389

Query: 237 NILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +I+  +GA   K  IVFC+T+   +    +  +  +   AL G+++Q  R + L   + G
Sbjct: 390 DIVSVYGAGGNKRTIVFCTTKRDCNELC-MDPKMTYDCQALHGDITQANRESTLAGFKKG 448

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMSVFV 347
             +V +ATDVAARG+D+  ++LV++AE  +      + E+ +HRSGRTGRAGRKGM + +
Sbjct: 449 SFKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITL 507

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
                +     + R       W  AP  + I    A   + D
Sbjct: 508 YTPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDD 549


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L     R  
Sbjct: 12  ILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERLTG-GPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  + Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 71  -ANQVRALILTPTRELAAQV-QECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK R+ L+FSAT 
Sbjct: 129 ATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    D V ++++  N     ++       +  +   +V +++    +  +V
Sbjct: 189 SDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLV 347


>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 419

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 179/339 (52%), Gaps = 1/339 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   T VQ   +   L  KDVL  AQTG+GKT AFGL +   L+  + +    S
Sbjct: 17  TLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQKLIDSDTKRDIQS 76

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   L    A+T + V    GG S++ + R+L  G  I++ TP
Sbjct: 77  NDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRNLDQGCDILIATP 136

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K +N+   + +VLDEAD MLD+GF  DI+ IL      R+ L FSAT    
Sbjct: 137 GRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDRQTLFFSATFDKR 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I T+A    ++ V V ++  N     +      V    +   +  ++     +  +VF  
Sbjct: 197 IKTIAYRMLEEPVEVQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTK 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 257 TKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQ 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           LE V++ ++    E+ +HR GRTGRAG++G +V ++ ++
Sbjct: 317 LEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRD 355


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  ++     I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNVVIEELPA 407


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 120 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 178

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 179 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 238

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 239 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 298

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 299 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 358

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 359 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 418

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 419 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 478

Query: 371 PAP 373
           PAP
Sbjct: 479 PAP 481


>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 441

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|326316425|ref|YP_004234097.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373261|gb|ADX45530.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 461

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/340 (38%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPASA-P 75
           G+   T +Q   +   L  +DVL  AQTGSGKT AFGL L   LL  A+     P    P
Sbjct: 36  GFDTPTPIQVQAIPAVLDGRDVLGRAQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRP 95

Query: 76  LALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            AL + PTRELA QVG   REL        + +A+  GGVS++ +   L+ GA  VV TP
Sbjct: 96  RALVLVPTRELAAQVGEVLRELAGHLPGPRLKIAIAFGGVSINPQLMALRGGADAVVATP 155

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L++S ++A+VLDEAD++LDLGF ++++ +L   P +R+ L+FSAT  P 
Sbjct: 156 GRLLDLVEHNALSLSQVQALVLDEADQLLDLGFAEELQRVLALLPAQRQNLLFSATFEPG 215

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFC 251
           +  LA+   +D +R+ IA       DI  RA+ V    R   +  +L +  G    +VF 
Sbjct: 216 VARLAEGLLRDPLRIEIAEAPGTAPDIAQRAIAVEGPRRTQLLKQLLTQEPGWTRVLVFV 275

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +     + L +         G LSQ  R   LQ  RD R +V + TD+AARGID+ 
Sbjct: 276 ATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIA 335

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            L  V++ +L     + +HR GRTGRAG  G++V FV P+
Sbjct: 336 GLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTPE 375


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 7/333 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   + +Q+ ++   L   DV+  AQTG+GKT AF L L + L  +       
Sbjct: 22  KGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINELRHD------- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +   L +APTREL +Q+G E+  L     V      GG  + R+   L+    IV+ TP
Sbjct: 75  GSIEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEKKPQIVIATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L     + VVLDE+DEMLD+GF DDIE I       R+ L+FSAT+   
Sbjct: 135 GRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFSATMPTP 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    +   + +   +  + DI  R  ++   +R++AIV ++       AI+F  
Sbjct: 195 IKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPSKAIIFTR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +       + L    ++  AL G++ Q+ER  +++  +D    V +ATD+AARG+D+  
Sbjct: 255 MKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVATDIAARGLDISG 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V +  +  NPE+ +HR GRTGRAG+KG+++
Sbjct: 315 VSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAI 347


>gi|315501146|ref|YP_004080033.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315407765|gb|ADU05882.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 629

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 7/351 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + E L+ +G      +Q A L   L  +DVL   QTGSGKT+AFGL + + L A+
Sbjct: 26  GLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARL-AD 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R  P   P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G 
Sbjct: 85  RNRARPLH-PRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 144 EIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL K +  D V  + A      S +D+  +L+   D+     +I    G  
Sbjct: 204 SATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAREG-- 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAA
Sbjct: 262 RTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355
           RGI +  + LV+H +   +P++ LHR+GRT RAG  G ++  V+P+  QRR
Sbjct: 322 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPK--QRR 370


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 213/399 (53%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKK--LAVACFYGGTPYGGQIERM 307

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q +   +++ A+    + R  
Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAA 427

Query: 234 AIVNILR-YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G  +  I+FC T+      ++ ++  L    +L G++ Q++R   L+  R
Sbjct: 428 VIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIKL-DAQSLHGDIPQKQREITLKGFR 486

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 546

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 547 EEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 585


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 182/336 (54%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   + +QE  +   +  KDV+ +AQTG+GKT  F L L   L   + +    +
Sbjct: 15  AIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLLERL--NSGQRVKGN 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
              AL + PTRELA QV  E  + Y+    + + C+ GGV ++ +   L+ G  ++V TP
Sbjct: 73  HIRALILTPTRELAAQV-HESVFKYSTNLPLTSQCVFGGVKINPQMLKLRKGCDVMVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ ILD  PK R+ L+FSAT S  
Sbjct: 132 GRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQNLLFSATFSNE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    + + V++   N     ++    +     +   +  ++     K  +VFC 
Sbjct: 192 IRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVTDKKQKPAMLAKLIDDGSWKQVLVFCK 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L       +A+ G  SQ  R+ AL+  + G+ RV +ATD+AARG+D+P 
Sbjct: 252 TKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVLVATDIAARGLDIPQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L    E+ +HR GRTGRAG  G +  ++
Sbjct: 312 LPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLV 347


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 195/351 (55%), Gaps = 15/351 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L      +++
Sbjct: 7   SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L++ D       P  L + PTRELA QV  +L  L A T       +GG + + + + 
Sbjct: 67  RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF   ++ I +++  KR
Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKR 179

Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
           R  LMFSAT+  + I  +A    K+ + V I + + +H DI  R  L    D   A+++ 
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ ++
Sbjct: 240 LLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 198/375 (52%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   
Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  
Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FS
Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++
Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AAR
Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362
           GID+P +  V++ +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R 
Sbjct: 407 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466

Query: 363 ----ANVSVVWEPAP 373
                +  V   PAP
Sbjct: 467 KLSIKDAPVKLAPAP 481


>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 436

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 181/346 (52%), Gaps = 2/346 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++  GY + T +Q   +       D+L  AQTG+GKT AF L +   +LAE  
Sbjct: 15  PELLS-AITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLAETT 72

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTRELA QV  E+     +  +   +  GGV++  +   L  G  I
Sbjct: 73  PAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTIQAQIERLHRGVDI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL DH     +++S +K +VLDEAD MLDLGF D+I+ + +  P K + L+FSA
Sbjct: 133 VVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAEYLPAKHQALLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA        RV +A        +      V  S +   +  ++R +G    
Sbjct: 193 TYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQAVYQVERSRKREMLSFLIRKNGWNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  TR    + T+ L     +  A+    SQ  R+  L   + G  RV +ATDVAARG
Sbjct: 253 LVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQGAFRVLVATDVAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +D+  L  V++ +L   PE+ +HR GRTGRAG +G+++ ++ Q  Q
Sbjct: 313 LDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEEQ 358


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 182/335 (54%), Gaps = 2/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L+E G+   T +Q   + P L  +DVL  AQTG+GKT AF + + +TL+  N + S
Sbjct: 12  IKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPVLNTLI--NVKKS 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    L +APTRELAVQ+    + + A T +      GGV    +      G  I+V 
Sbjct: 70  EHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQIAAADYGIDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I  K + I+ +K +VLDEAD MLDLGF  DI+ +    P + + L FSATI+
Sbjct: 130 TPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPARHQTLFFSATIN 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +  K+ +R+ IA ++R   +I +    + + D+   +  +L+ H     IVF
Sbjct: 190 EEIKKLAYSLVKNPIRIQIAPKDRVSKNITHSVAFIGMDDKRFFLERLLKEHPESKVIVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R    +     + V + G   QQ R  A+   ++G   V IATD++ARGID+
Sbjct: 250 VRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVLIATDISARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +E V++ ++    EN +HR GRTGR   KG ++
Sbjct: 310 AGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAI 344


>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 484

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 190/338 (56%), Gaps = 7/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A +  G+   + +Q   +   L  KD++  AQTGSGKT AF L +  TL      F    
Sbjct: 52  ACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPF---- 107

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+ +++  L +  GV  AV +GG+ +  +   L    H++V TPG
Sbjct: 108 --FALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHVIVATPG 165

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH+   KG ++  LK +V+DEAD +LDL F   I+ +L   PK+R   +FSAT++  
Sbjct: 166 RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYLFSATMTTK 225

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +      VRV ++S+    S +    +L+ L ++D+ ++ +     + + I+F  
Sbjct: 226 VAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDSYLLYLANELSSSSMIIFTR 285

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T A   R + +L    F  + L G+++Q  R  +L   + G   + +ATDVA+RG+D+P 
Sbjct: 286 TVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPL 345

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 346 VDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQ 383


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 16/335 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T VQ+  +   L+  D+L S+ TGSGKT AF L     ++  +D    + A   L
Sbjct: 20  GYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCLQRMI--DDPKPKSGAARML 77

Query: 79  AIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            + PTRELA+Q+       GRE+  L        A  +GG S   + +DL     I++ T
Sbjct: 78  VLTPTRELALQIEKAARNYGREVRRLN------TACLVGGSSYFMQLKDLGRQPEILIAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI    +++S ++ +VLDEAD MLD+GF DDIE I+  +  +R+ ++FSAT+  
Sbjct: 132 PGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPERQTMLFSATMEG 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
            +  LA+   +D  R+ I  +  Q + I+ + ++   L+ ++  +  +LR      A+VF
Sbjct: 192 VVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMADDLAHKNRLLGALLRDESLNQAVVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+ +    +  L +  F V AL G++ Q+ R+  L  +R GR  + +ATDVAARGID+
Sbjct: 252 TATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGILVATDVAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +  VI+ +     E+ +HR GRTGRAGR G +V
Sbjct: 312 VGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAV 346


>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 503

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G V    +Q   L   L   D++  A+TG+GKT AFGL L   +  +     
Sbjct: 29  IADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLLQRVHTQ----- 83

Query: 71  PASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P SA  P AL + PTRELA+QV  +L     +  V +A   GG +   +   L+ G  IV
Sbjct: 84  PGSAKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQISALRKGVDIV 143

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D ++ + L +S + A+VLDEAD+MLDLGF  DIE IL  +P +R+ ++FSAT
Sbjct: 144 VGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQRQTMLFSAT 203

Query: 189 ISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I  L++ Y +    +    +  +     +          D+   +  +L+      
Sbjct: 204 MPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLARLLQARNRGL 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+      +  L    F   A+ G+L Q +R  AL+  R+G+  V +ATDVAAR
Sbjct: 264 TMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ D+  V++ E   + +   HR GRTGRAGR G +V  I
Sbjct: 324 GIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFI 365


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 185/353 (52%), Gaps = 8/353 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L +  +   T++Q   +   L  +DV+  +QTG+GKT AF L +   L          
Sbjct: 16  EILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPMLEKLDVSK------ 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  A+ + PTRELA+QV   +       G+ V    GG S+ R+   L+ G H+VVGTP
Sbjct: 70  KAVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLKRGVHVVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +    L +  +K  VLDEADEML +GF DD+  IL  +P +R+  +FSAT+ P+
Sbjct: 130 GRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQTALFSATMPPS 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFC 251
           I  L   +    V V +       + I+  A L+     +  A+  IL     + A++F 
Sbjct: 190 IRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFV 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+ 
Sbjct: 250 RTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVD 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            L  VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR ++ F   N
Sbjct: 310 LLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQAFERHN 361


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 188/358 (52%), Gaps = 8/358 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           I +AL+E GYV  T +Q   +   +  +D+   AQTG+GKT AF L +   L +E   R 
Sbjct: 13  ILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPILHRLASETPQRR 72

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +P      L ++PTRELA Q+                V  GGV++ R+ R L NG  I+V
Sbjct: 73  APRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQERALANGVDILV 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I  + L++  ++ +VLDEAD+MLDLGF   ++ I+   PK R+ L FSAT+
Sbjct: 133 ATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLPKARQSLFFSATM 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I TLA  Y +D V+V +         ++ R V V    +   +  ILR       +V
Sbjct: 193 PRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLATILRDASIDRVLV 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  + L +      A+ G  SQ +R  AL   R G  RV +ATD+AARGID
Sbjct: 253 FTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRVLVATDIAARGID 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFRE 362
           +  +  V++ +L + PE  +HR GRT RAG  G+++     N + RA     ERL R+
Sbjct: 313 VEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFC--NDEERAYLRDIERLTRQ 368


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score =  200 bits (509), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 180/337 (53%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L  EN R
Sbjct: 11  QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L ++PTRELA Q+                V  GGV+++R+ R +  G  I+
Sbjct: 71  -APRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQERAIAPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P +R+ L FSAT
Sbjct: 130 VATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA  Y  + V+V +         +D + +      +   + ++LR    +  +
Sbjct: 190 MPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ +L + PE+ +HR GRT RAG +GM++
Sbjct: 310 DVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAI 346


>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 479

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 202/389 (51%), Gaps = 27/389 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+   + +Q+  +   L  KD++  A+TGSGKT AF + +  +LL    R  
Sbjct: 39  ICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQRL- 97

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA Q+G + E L A  G+  A  +GG+ + +++  L    H+V+ 
Sbjct: 98  -----YALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIA 152

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  +K +VLDEAD ML + F ++I  I+   P  R   +FSAT+
Sbjct: 153 TPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   KD V+V I  +      +    + +    +D  +  +L     ++ ++
Sbjct: 213 TSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLI 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST     + T +L    FQ + L G++ Q  R  AL   +     V + TDVA+RG+D
Sbjct: 273 FASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF------ 360
           +P +++VI+ ++ ++ ++ +HR GRT RAGR G+++  + Q    + +R E L       
Sbjct: 333 IPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDA 392

Query: 361 ---REANVSVVWEPAPSVEAIRERDAQRI 386
               E  V V+ E        R  +AQRI
Sbjct: 393 YSCEEETVLVITE--------RVNEAQRI 413


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 26  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 85  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384

Query: 371 PAP 373
           PAP
Sbjct: 385 PAP 387


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 272 TVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 185/337 (54%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L     R   A
Sbjct: 14  QAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERLTG-GPRVR-A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +   AL + PTRELA QV +E  + Y++   +  AV  GGV ++ +   L+ GA ++V T
Sbjct: 72  NQVRALILTPTRELAAQV-QECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGADVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK R+ L+FSAT S 
Sbjct: 131 PGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFSATFSD 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK    D V ++++  N     ++       +  +   +V +++    +  +VF 
Sbjct: 191 EIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQVLVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+P
Sbjct: 251 RTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAARGIDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ EL +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 311 QLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLV 347


>gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
 gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
          Length = 458

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 126/330 (38%), Positives = 187/330 (56%), Gaps = 9/330 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+ ++T +Q   L   L  +DV+  A+TGSGKT AFGL L   L  +  R      
Sbjct: 16  LTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLLHKLDVKRFRIQ---- 71

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             +L + PTRELA QV +E+  L      + V    GGV +  +   L++GAHI+VGTPG
Sbjct: 72  --SLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L++  +  +VLDEAD MLD+GF+ ++E I++  P +R+ L+FSAT    I
Sbjct: 130 RIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQTLLFSATFPEQI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFCS 252
            ++A +     V V +AS   + S ID     V   +DR  A+  +L  H  ++A+VFC+
Sbjct: 190 KSIADSIMFKPVLVKVAS-THETSTIDQHFYEVGNNNDRMRALKLLLLQHRPESAVVFCN 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L    F VVAL G+L Q++R   L    +    + +ATDVAARG+D+  
Sbjct: 249 TKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDA 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           L+ VI+  ++ + E  +HR GRTGRAG KG
Sbjct: 309 LDAVINYHIAFDTEVHIHRIGRTGRAGSKG 338


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155]
 gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223]
 gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 438

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 13/343 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + LL+     +
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-----T 74

Query: 71  PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           P       + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ L  G
Sbjct: 75  PVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GR+ D++R   + ++ ++AVVLDEAD M DLGF  DI F+    P+  +R  
Sbjct: 135 VDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  + V+V IA E +   +I       +  ++   ++ ++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG KGMS+
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSI 357


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 26  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 85  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384

Query: 371 PAP 373
           PAP
Sbjct: 385 PAP 387


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 5/351 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E+GY   T +Q   +   LR +DV+  A TG+GKT  F L +   LL+      P 
Sbjct: 14  KAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMVQ-LLSGGAIAQPK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL I PTRELA QV + ++     T +  AV  GGV +  +   L  G  ++V TP
Sbjct: 73  SV-RALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQLATGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + +N + L+ +VLDEAD MLDLGF DDI  I    P +R+ LMFSAT S  
Sbjct: 132 GRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQTLMFSATFSDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LAK    +   + ++  N     +  +   V  + +  A++ +L+ H  +  +VF  
Sbjct: 192 IKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVDKTRKSEALIYLLKKHQWRQVLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L        ++    +Q  R++AL   + G  +V +ATD+A+RGID+  
Sbjct: 252 TKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVLVATDIASRGIDVNQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQRRA-ERLF 360
           L  VI+ +L    E+ +HR GRTGRAG  G+  S+F I ++ Q +A ERL 
Sbjct: 312 LPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQAIERLL 362


>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 507

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 182/345 (52%), Gaps = 7/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I EAL  +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L    L   +   
Sbjct: 81  ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLLMDTLGPGEEGW 140

Query: 70  --SPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              PAS +P AL I PTRELA QV  EL    AK  V +    GG +   +  DL+ GA 
Sbjct: 141 DEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYEPQIEDLERGAE 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL  +   R  ++FS
Sbjct: 201 VVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILARTRADRHTMLFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           AT+  A+  LA+ Y      +       +   +     +V  +   N    +  IL+  G
Sbjct: 261 ATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKVEVVSRILQAEG 320

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+ +  V +ATDV
Sbjct: 321 RGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFRNNKVDVLVATDV 380

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +
Sbjct: 381 AARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFV 425


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 205/393 (52%), Gaps = 23/393 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + + E G+   T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 121 FPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQP 180

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+ +E    + ++  +   C+ GGV   ++ RDLQ G 
Sbjct: 181 -LLSPGDGPVVLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPKSQQIRDLQRGV 238

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 239 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA++Y  D ++VNI S      H+      V+     RD  + ++     
Sbjct: 299 SATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVKHLEIASK 358

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K++  I+F ST+ +    T  L +  +  +A+ G+  QQER   L   R GR+ + +AT
Sbjct: 359 DKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVAT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++              F 
Sbjct: 419 DVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAI------------SFFT 466

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           EAN ++    A  +  +RE   Q I QD L  D
Sbjct: 467 EANKTL---GAQLISIMREA-KQEIPQDLLVYD 495


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|47218719|emb|CAG05691.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 727

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/382 (34%), Positives = 211/382 (55%), Gaps = 28/382 (7%)

Query: 31  LNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIAPTRELAV 88
            +P    +DV+  A+TG+GKT +F + L   L  + D  +PA   AP  L + PTRELA+
Sbjct: 185 FDPVYDGEDVIAQARTGTGKTFSFAIPLVEKL--QGDSAAPARGRAPKVLVLTPTRELAI 242

Query: 89  QVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
           QV ++ + +  K  +V   C  GG S   +   ++NG  I+VGTPGR+ DH++   L++S
Sbjct: 243 QVAKDFKDIIKKLSIV---CFYGGTSYMPQIEAIRNGIDILVGTPGRIKDHLQNHKLDLS 299

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATISPAITTLAKNYQK 202
            LK VVLDE D+MLD+GF + +E IL  S KK      + L+FSAT  P +  +AK Y +
Sbjct: 300 KLKHVVLDEVDQMLDMGFAEQVEEILALSYKKDADTNPQTLLFSATCPPWVYDVAKKYMR 359

Query: 203 DAVR-VNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKN-AIVFCSTRASV 257
            + + V++  +  Q   + +++ A+    S R   I +++R Y G+   AIVFC T+   
Sbjct: 360 PSCKHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVIRVYSGSHGRAIVFCETKKEA 419

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +    + A       +L G++ Q++R   L+  R G   V +AT+VAARG+D+P+++LV+
Sbjct: 420 NELA-LNASIKQNAQSLHGDIPQKQRETTLKGFRKGSFEVLVATNVAARGLDIPEVDLVV 478

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
                 + E+ +HRSGRTGRAGR G+ +    +  + +   +  +A ++      P+   
Sbjct: 479 QCSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEDQLRYVENKAGITFRRVGVPTAND 538

Query: 378 I---RERDAQRILQDPLFLDSI 396
           I     +DA R      FLDSI
Sbjct: 539 IIKSSSKDAVR------FLDSI 554


>gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 582

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 209/361 (57%), Gaps = 19/361 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P ++  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 39  FEDLGLAPTIL-SALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 97

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVH 115
            +  +     P +  +    L + PTRELA+QV  +    Y +   G+  A  +GG+   
Sbjct: 98  RIAHQ-----PGNKGVGVQVLVLTPTRELALQVA-DATASYGRNLPGLRTATVVGGMPYG 151

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++ 
Sbjct: 152 AQLKALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIER 211

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
            PK+R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I  +++L A   + +  
Sbjct: 212 LPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANI-TQSLLYADDAAHKMR 270

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G
Sbjct: 271 LLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRG 330

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + RV +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G + F +  + +
Sbjct: 331 QLRVLVATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQA-FTLATHAE 389

Query: 354 R 354
           R
Sbjct: 390 R 390


>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 486

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/378 (34%), Positives = 202/378 (53%), Gaps = 9/378 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L     +    
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRGA 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373

Query: 368 V--WEPAPSV--EAIRER 381
           +  +EP P+V  E I++R
Sbjct: 374 IAGFEPDPNVKPEPIQQR 391


>gi|313674605|ref|YP_004052601.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941303|gb|ADR20493.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 371

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 203/364 (55%), Gaps = 11/364 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + LSE    N T +QE ++   ++   D++  AQTG+GKT AFGL +   +  ++D+   
Sbjct: 14  KGLSELNIQNPTKIQELVIGHLMQNTGDLVAQAQTGTGKTAAFGLPILERINPKDDKIQ- 72

Query: 72  ASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                A+ ++PTRELA Q+  +L ++      V + V  GG  + ++ ++L+    I+V 
Sbjct: 73  -----AVILSPTRELAQQIKHQLFKFTKYSDKVFMEVVFGGEKIEKQIQNLKRPTQILVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D IR K ++I   K +VLDEADEML +GF+ D+EFIL++   K+ + +FSATI 
Sbjct: 128 TPGRLNDLIRRKAVDIRDAKLMVLDEADEMLSMGFKKDLEFILNTMKHKKDIWLFSATIP 187

Query: 191 PAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  + K Y + +A ++  +     +  I ++ V     ++   +   L+    +  I+
Sbjct: 188 TDIKYIIKQYLEPNAKQIKASGNELVNEKIMHQYVPCDTDEKMMVLDYFLKTQKKERGII 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+ S     + L         L G++ Q++R   ++  ++ +  + IATDVAARGID
Sbjct: 248 FCNTKNSARALHEQLNARKISTGILEGDMHQKDRDKEMRAFKNKKLDLLIATDVAARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + +L  V+H E+    +  +HRSGRT RAG+ G+S+ +  +N   + +++ +E  + +  
Sbjct: 308 VANLAFVVHYEIPKQVDYYVHRSGRTARAGKTGISMALCTKNEVTQIKKIQQELGIKI-- 365

Query: 370 EPAP 373
           +P P
Sbjct: 366 KPVP 369


>gi|260945072|ref|XP_002616834.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
 gi|238850483|gb|EEQ39947.1| hypothetical protein CLUG_04075 [Clavispora lusitaniae ATCC 42720]
          Length = 559

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 197/373 (52%), Gaps = 34/373 (9%)

Query: 6   NIPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +P  I E ++++  Y   T VQ A +   LR +DV+  A+TGSGKT+AF L L + + +
Sbjct: 151 QLPTSIVEVITQKLKYTEPTPVQRAAIPVALRHRDVVGIAETGSGKTLAFLLPLITYIQS 210

Query: 65  --------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                   E+ +   A+  L L +APTRELA+Q+ +E E +    G+ V   IGG     
Sbjct: 211 IEPEYMKYEHSKEDNANRALGLVLAPTRELALQITKEAEKVAGPLGLSVVTIIGGHQYEE 270

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+NG HIVV TPGRL D +    +++     + +DEAD+M+D+GF   ++ ILD  
Sbjct: 271 TVHSLRNGVHIVVATPGRLVDSLERGIVSLEKCYHLTMDEADKMIDMGFEKSLQAILDYL 330

Query: 177 P----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           P                 KR  LMF+ATI+PAI  + K Y  D   + +   N    +I 
Sbjct: 331 PSSESLQKSIDSRIFRVSKRTTLMFTATITPAIEKITKQYLIDPAFLYVGGANEVVENIS 390

Query: 221 YRAVLV---ALSDRDN----AIVNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLF-QV 271
            +   +    + D D     ++V IL+  G   + I+F + + +V +  + L    F +V
Sbjct: 391 QQFEYMGEETVQDFDEKRFASLVRILKAQGHDMSVIIFANFKRTVEQLAEELEGKGFPKV 450

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
             + G  +Q+ R  A++  R  RA + IATDVAARG+D+P + LV++  +S   E  +HR
Sbjct: 451 AVVHGSKTQEAREKAIESFRAKRANILIATDVAARGLDVPHVSLVVNYHMSKKFEEYIHR 510

Query: 332 SGRTGRAGRKGMS 344
            GRTGRAG+KG S
Sbjct: 511 IGRTGRAGQKGAS 523


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL  +GY   + +Q   +   L  +D+L +AQTG+GKT  F L L   LL++  +  
Sbjct: 12  ILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE-LLSQTQKAG 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL + PTRELA Q+   +        +   V  GGV +  +   L+ G  I+V 
Sbjct: 71  PKQV-RALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTLRRGIDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   ++   L+ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSAT S
Sbjct: 130 TPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I TLA     +A  V++   N     +    V V  + +   +  + R++  +  +VF
Sbjct: 190 PEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRFYRWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   +R  + +     +  A+ G  SQ  R+ AL   + G  R+ IATD+AARGID+
Sbjct: 250 CRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L  V++ EL   PE+ +HR GRTGRAG  G +  ++
Sbjct: 310 SELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLV 347


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/316 (37%), Positives = 181/316 (57%), Gaps = 21/316 (6%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           DV+  ++TGSGKT+AF + +     AE           AL + PTRELA Q+  E     
Sbjct: 42  DVVAQSETGSGKTLAFAIPIIEA--AET-----GKGIQALVLTPTRELANQIENEFRRFS 94

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
              G+ +A   GGV +  + RDL+  A +VVGTPGRL DH+R K ++ S ++  V+DEAD
Sbjct: 95  RHKGLRIANIHGGVPIEPQIRDLRR-ADVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEAD 153

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD--AVR----VNIASE 212
            MLD+GF DD++ I+  +PK R+ L+FSATI P +  LA  Y K+   +R    V+    
Sbjct: 154 RMLDMGFIDDVKAIMRCTPKTRQSLLFSATIPPEVRALASRYMKNPKTIRTKELVDPKLL 213

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
           N+ + D+D        S++ + +V++LR    K A+VF + R +     K L  H F+  
Sbjct: 214 NQYYYDVDD-------SEKFSMLVHLLRKENPKKALVFTNMRKTSDIVAKNLFMHGFKAS 266

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G L+Q +R   ++  R G  RV +ATDVA+RG+D+  +  V + ++ S  E+ +HR 
Sbjct: 267 VLHGGLTQSKRDRMMERFRKGEIRVLVATDVASRGLDVKGVTHVFNYDVPSKAEDYIHRI 326

Query: 333 GRTGRAGRKGMSVFVI 348
           GRT RAG+ G +V ++
Sbjct: 327 GRTARAGKNGKAVTIL 342


>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 446

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 195/344 (56%), Gaps = 8/344 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           + P+V+ +AL+ +G    T VQE  + P +R  +D +V AQTG+GKT+AF L L   +  
Sbjct: 7   HCPEVLVDALARQGIREATLVQEQAI-PAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKG 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                  A    AL ++PTRELA+Q  R  + L    G+  A+  GG  + R++  L+  
Sbjct: 66  N------ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQK 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL DH+R   + +S +  +VLDEADE++ LGF +D+E +L++     ++++
Sbjct: 120 PQLIIATPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLML 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L + Y K+   + +  E    ++I+   V      + + +  +L  +  
Sbjct: 180 FSATMPERIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQP 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC T+  V+  T  LA   + V  L G+L+Q +R+  ++  R+ + ++ + TD+A
Sbjct: 240 YLAMVFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  +  V + +L  + E  +HR GRTGRAG KG++V  +
Sbjct: 300 ARGLDIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFV 343


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 26  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 85  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 205 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384

Query: 371 PAP 373
           PAP
Sbjct: 385 PAP 387


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 188/347 (54%), Gaps = 13/347 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L + + L     
Sbjct: 11  PKVL-KAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPMITRLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    +       +  A+ IGGVS   +   +  G  +
Sbjct: 70  R---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQDAAIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------NAIVNILR 240
           T++P I  +   +     RV IA +     +I+   V+   S +D         +  ++ 
Sbjct: 187 TMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEKRRVLRELIN 246

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G   +NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   RDG  ++ 
Sbjct: 247 QEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDGFRDGTLKIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++
Sbjct: 307 VASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAI 353


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 184/344 (53%), Gaps = 5/344 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S L     R   A
Sbjct: 14  QAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPMLSRLEQGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV            V VA+ IGGVS   +   +  GA +++ TP
Sbjct: 71  RMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAKITRGADVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P 
Sbjct: 131 GRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVF 250
           IT L + +  +  RV +A  +   + I    +  A        +  L    A  KNAI+F
Sbjct: 191 ITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKRETLRRLLRSAADFKNAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L  H F   AL G+L Q+ R  +L   + G   + + +DVAARG+D+
Sbjct: 251 CNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALIVCSDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           PD+  V++ ++ ++ E+ +HR GRTGRAG+ G+++ ++ +  Q+
Sbjct: 311 PDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQK 354


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 187/338 (55%), Gaps = 7/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L   GY   T +Q A +   L+  D+L +AQTGSGKT AF L +   L    ++    +
Sbjct: 15  SLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIERLAGMEEQ---KA 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            P  L + PTRELAVQVG  +E  YA+       V V  GGV    + +    G  +VV 
Sbjct: 72  KPRFLVLVPTRELAVQVGAAIER-YAEGAPRKARVLVAFGGVGYDAQMKAAYAGVEVVVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + + +  ++ +VLDEAD +L LGF +++  IL+  P+ R+ L+FSAT  
Sbjct: 131 TPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQNLLFSATFP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             + +LA    KD V++ + + +R    I  RA+ V  + R   + ++L   G +  +VF
Sbjct: 191 QNVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLETEGWERVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             ++      T  L +H  + VAL G +SQ +R+ +L+  +  + RV +ATDVAARGID+
Sbjct: 251 VGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDVAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L  +  + +HR GRTGRAG  G++V  I
Sbjct: 311 AGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFI 348


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 415

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 191/347 (55%), Gaps = 9/347 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L+  D+L  AQTGSGKT+AF L + + +L   D+  P +A  AL + PTRELA+Q+   +
Sbjct: 42  LKGHDILGIAQTGSGKTLAFSLPILNRILTLGDKRYPKTAR-ALILVPTRELAIQIEEAI 100

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             +   T +   + +GG+S   + R +  G  I++ TPGRL D IR K +++S  +  +L
Sbjct: 101 SAVAKGTHLSTCLIVGGMSRLIQIRRMAKGVDILIATPGRLMDLIRSKYVDLSQSRFFIL 160

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD MLD+GF  D+  I +   +K +  +FSAT+S  +  LA N  +  V++ + S+  
Sbjct: 161 DEADRMLDMGFISDVRQIANFLHEKCQTALFSATMSKEVNVLADNLLRKPVKIEVVSQGT 220

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++I      V+ S++ + +  +L      + IVF  T+       + LA+  + V  +
Sbjct: 221 TAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARSLAKTGYSVATI 280

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  SQ  R  AL+  R+G  RV +ATD+AARGID+P +  VI+ +L  N E+ +HR GR
Sbjct: 281 HGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPDNAESYVHRIGR 340

Query: 335 TGRAGRKGMSVFVIPQNMQR----RAERLFR----EANVSVVWEPAP 373
           TGR G  G ++ +  + +++      ERL R       + + + P P
Sbjct: 341 TGRNGASGYAITLFDEKIEQVRLCAIERLIRMKLKRKEIPLQFAPLP 387


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 190/343 (55%), Gaps = 2/343 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+E G    T +Q   +   +  +DVL  AQTG+GKT AFGL +   L+ ++ R +
Sbjct: 12  LTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMIDALI-KDSRRA 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL +APTRELA Q+   L      + +   V  GG  +  + + ++ G  I+V 
Sbjct: 71  QAKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQRMERGTAILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  K +++S  + +VLDEAD+MLDLGF   +  I    P  R+ ++FSAT+ 
Sbjct: 131 TPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANRQTMLFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA ++  + +RV +    +  + I      VA   + + ++ +L  H  + A+VF
Sbjct: 191 KQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLDAHRDELALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  + +  K L    + V A+ G  SQ +R  AL+  R G  RV +ATDVAARG+D+
Sbjct: 251 GRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVLVATDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           PD+  V + EL + P+N +HR GRT RAG+ G +V F  P  M
Sbjct: 311 PDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEM 353


>gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185]
 gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195]
 gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 438

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 195/343 (56%), Gaps = 13/343 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + LL+     +
Sbjct: 20  VKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLS-----T 74

Query: 71  PA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           P       + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ L  G
Sbjct: 75  PVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GR+ D++R   + ++ ++AVVLDEAD M DLGF  DI F+    P+  +R  
Sbjct: 135 VDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEANQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  + V+V IA E +   +I       +  ++   ++ ++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG KGMS+
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSI 357


>gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 617

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 198/367 (53%), Gaps = 19/367 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY     +QE  +   L+  D+L  A TGSGKT AF L L  ++       + AS 
Sbjct: 21  LKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLLQSI-----NINTAST 75

Query: 75  PLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L I PTRELA+Q+G+  ++++   +G+ VA+  GG + + +  DL+   HI+VGTPG
Sbjct: 76  Q-GLIITPTRELAIQIGQVCIDFIKYISGISVAILYGGQNYNIQLNDLRKNPHIIVGTPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+     NIS LK +++DEADEML +GF +D++ I++  P  R+   FSAT    I
Sbjct: 135 RLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPVDRQTACFSATFPENI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFC 251
             ++  +      V I + +    DI     LV   +  +  A++  L       AIVF 
Sbjct: 195 KKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALIRFLEIEDYDAAIVFV 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T++   R +++L    +   AL+G+++Q  R   +  ++ G   + I+TDVAARG+D+ 
Sbjct: 255 RTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLDILISTDVAARGLDIQ 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ------NMQRRAERLFREANV 365
            + LVI+ ++ +N  + +HR GRTGRAGR G S+  + +      N  +R E+     N+
Sbjct: 315 RISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLLNSIKRGEKF----NI 370

Query: 366 SVVWEPA 372
           S V  P 
Sbjct: 371 SEVQCPT 377


>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 581

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 134/400 (33%), Positives = 209/400 (52%), Gaps = 33/400 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           I Q + ++L    + N T VQ   +   L+ KD++VSAQTGSGKT AF L     LL E 
Sbjct: 11  IEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQLLHEL 70

Query: 66  ----------------NDRFSPASAP----LALAIAPTRELAVQVGREL-EWLYAKTGVV 104
                             R S A+ P      L + PTRELA+QV     E++Y   GV 
Sbjct: 71  ETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIYGFKGVH 130

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
           +A  +GG++   +   L     IVV TPGRL DHI+   +N+ +LK ++LDEAD MLD+G
Sbjct: 131 IATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEADRMLDMG 190

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRA 223
           F  DI  ++  +P  R+ L+FSAT    +  LA++   D  R+ ++    +H +I+ Y  
Sbjct: 191 FIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQNIEQYLF 250

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
               +  +   +  +L+   A+  IVF  T+   +     L +   +   L G+++Q +R
Sbjct: 251 YADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKASELHGDMNQGQR 310

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           +  +Q +  G+ +V +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAGR G 
Sbjct: 311 NRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRTGRAGRDGR 370

Query: 344 SVFVIPQNMQRRAERLF-----REANVSVVWEPAPSVEAI 378
           + + +    +RR  R       RE +++V+    P +E +
Sbjct: 371 A-YTLALLSERRGVRFIENYINREFDIAVI----PGLEPV 405


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 188/343 (54%), Gaps = 13/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ G    T +QE  +      KD++  A TG+GKT+AF       LL   ++ +P 
Sbjct: 14  DILNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAF-------LLPIFEQINPK 66

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + AL + PTRELA+Q+  E + L     + V  C GG  +  + + L     ++V T
Sbjct: 67  SKDVQALILTPTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLNKNVQLIVAT 126

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  K +++  +K  VLDEAD+ML +GF++++E I++   KK++ML FSAT+  
Sbjct: 127 PGRLLDHIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQMLCFSATMDS 186

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYHGAKNAIV 249
            +  LA  Y  D   +++  E      I  +  +V  +DR   +A+  +L       AI+
Sbjct: 187 EVKKLAYRYMNDPAIISVKKEEVDMHSI--KQFVVETTDRQKRDALCKVLDEDNPFMAII 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+        V+A   +    +  +++Q +R   ++  R+ + +  IATDVAARG+D
Sbjct: 245 FCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLIATDVAARGLD 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  +  + + ++   PE+ +HR GRTGRAG  G++ +FV P+N
Sbjct: 305 ITGVTHIYNYDIPETPESYVHRIGRTGRAGESGITCMFVDPKN 347


>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
 gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
           Full=DEAD box protein 27
 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
          Length = 783

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 191/344 (55%), Gaps = 8/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+   T +Q   +   L  KD+L SA TGSGKT AF L +   LL    R S  
Sbjct: 203 KAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLF---RDSEY 259

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   L + PTRELA+Q    +E L   + +   + +GG+S   +  +L+    +V+ TP
Sbjct: 260 RAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATP 319

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+    G+ +  L+ ++LDEAD +LD+GF+D+I  I++S P  R+ ++FSAT++ 
Sbjct: 320 GRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLND 379

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNIL-RYHGAKNA 247
            + TLAK   +  +RV + +  +  S ++   V +    LSDR   ++++  R       
Sbjct: 380 EVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGT 439

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC ++  V R   +      +   L G LSQ++R ++LQ  RDG+    +A+DVA+RG
Sbjct: 440 IIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRG 499

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +D+  ++ VI+  + +N  N +HR GRT RAG  G S   I  N
Sbjct: 500 LDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDN 543


>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 383

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 195/346 (56%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLTN 68

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
             +  RF     P AL +APTRELA+Q+  + + L   T + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKKMLD 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           +N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP  ++
Sbjct: 127 RNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPFKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +V   D+   +  IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVENKDKYKLLQEIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKNNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSI 352


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 197/353 (55%), Gaps = 20/353 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALA 59
           FEN+   P ++   L+  GY   T +Q+  + PDL    DV+ SAQTG+GKT AF L   
Sbjct: 3   FENLNLHPAIVKAVLAA-GYTAPTPIQQQAI-PDLIAGHDVMASAQTGTGKTAAFMLPAL 60

Query: 60  STLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS 113
             L       +PA      P  L + PTRELA+QV  +    Y K    + V   +GG+ 
Sbjct: 61  HRLA------TPAQIRGRGPRILVLTPTRELALQVS-DAASKYGKFLPRINVVSILGGMP 113

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + + L     ++V TPGRL DHI    ++ S L+ +VLDEAD MLD+GF  D+E I 
Sbjct: 114 YPLQNKLLSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIA 173

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
            S+P  R+ L+FSAT+  AI  +A    K   R+ +A+++ +   I+ R   V  L+ ++
Sbjct: 174 LSTPATRQTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKN 233

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++LR    K AIVF +T+         L+    +  A+ G+++Q+ER+  L  +R 
Sbjct: 234 RLLDHLLRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQ 293

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GR ++ +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 294 GRLKILVATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346


>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
          Length = 488

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 199/382 (52%), Gaps = 16/382 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN   S
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--S 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS------VFVIPQNMQRRAERLF-REA 363
             L  V++ +L + PE+ +HR GRTGR GR G +      V V  + + R  ERL  RE 
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREI 372

Query: 364 NVSVV--WEPAPSV--EAIRER 381
              V+  +EP P+   E I+ R
Sbjct: 373 PQQVIPGFEPDPNAKPEPIQRR 394


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF       LL   +  S
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65

Query: 71  P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P  +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+
Sbjct: 66  PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT+
Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247
           +  +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       A
Sbjct: 186 NSEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG
Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           +D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  ++     I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPA 407


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF       LL   +  S
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65

Query: 71  P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P  +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+
Sbjct: 66  PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT+
Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247
           +  +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       A
Sbjct: 186 NSEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG
Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           +D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 6/342 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  Y   T++Q   + P L  KDV+ SAQTG+GKT AF L L   LL    +  P  
Sbjct: 18  AIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLHKLLNTTKKDEPGI 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + + + PTRELA QV    E     T +  A+  GG S+  + + L+  A ++V TPG
Sbjct: 78  ARVVI-LTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQIKALKT-AQVIVATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI    + +S + ++V DEAD MLD+GF D+I  IL   P  R+ L+FSAT   ++
Sbjct: 136 RLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLFSATFDDSV 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHGAKNAIVFC 251
             L+K   KD   + +  + R  + ++   V+ A+  DR   +V +++     +  ++F 
Sbjct: 196 FELSKKLLKDPELIEV--DKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKNWRQVLIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  K + +   +  ++ G+ SQ  R  AL   ++G  RV +ATDVAARG+D+P
Sbjct: 254 RTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVAARGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            L+ VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q
Sbjct: 314 ALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQ 355


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score =  200 bits (508), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 TVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/372 (33%), Positives = 194/372 (52%), Gaps = 13/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E
Sbjct: 46  NLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQLDYE 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL +APTRELA Q+ + +  L     V    C+GG SV  ++R LQ+G 
Sbjct: 106 KEECQ------ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L   H+K   LDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVVVGTPGRVYDMLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   D + + + ++      
Sbjct: 220 SATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++     ERL ++  
Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD----DERLLQDVQ 395

Query: 365 --VSVVWEPAPS 374
                V+E  PS
Sbjct: 396 RFYQTVFEELPS 407


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L +  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+   I TL++ Y  + VR+ + + N+  ++I   ++ +A  ++ + +   L 
Sbjct: 172 QFLMFSATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQESIHIADKEKFSELTKQLD 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  TR S  +   +L     +  A+ G+LSQ++R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P+++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIR 345


>gi|302864863|ref|YP_003833500.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302567722|gb|ADL43924.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 635

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 7/351 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + E L+ +G      +Q A L   L  +DVL   QTGSGKT+AFGL + + L A+
Sbjct: 26  GLPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARL-AD 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R  P   P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G 
Sbjct: 85  RNRARPLH-PRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 144 EIVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL K +  D V  + A      S +D+  +L+   D+     +I    G  
Sbjct: 204 SATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVAASIAAREG-- 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAA
Sbjct: 262 RTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355
           RGI +  + LV+H +   +P++ LHR+GRT RAG  G ++  V+P+  QRR
Sbjct: 322 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPK--QRR 370


>gi|260830758|ref|XP_002610327.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
 gi|229295692|gb|EEN66337.1| hypothetical protein BRAFLDRAFT_144535 [Branchiostoma floridae]
          Length = 655

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 129/370 (34%), Positives = 205/370 (55%), Gaps = 25/370 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  R  V L  VQ +  +      DV+  A+TG+GKT+AF + L   L  +        A
Sbjct: 105 LKARNVVKLFPVQYSTFDFVYDGWDVITQARTGTGKTLAFSIPLVERLQKDGVSIKRGRA 164

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPG 133
           P+ + +APTRELA+QV  + + +  K   + + C+ G + +  + D  N G  I+VGTPG
Sbjct: 165 PVVIVLAPTRELAIQVYEDFKSISTK---LTSFCVYGGTPYPPQNDAINRGLDILVGTPG 221

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR------RMLMFSA 187
           R+ DH+R   LN+S L+ VVLDE D ML++G  + ++ IL+++ KK       + L FSA
Sbjct: 222 RIQDHVRSGRLNLSELRHVVLDEVDRMLEMGMVEQVDEILEAAYKKDDKSQNPQTLFFSA 281

Query: 188 TISPAITTLAKNYQK-DAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   +   A+ Y K +   V++    +NR  + +++ A+      R   I +I+  +  
Sbjct: 282 TLPNWVHEAARKYMKAEPKHVDMIGTEQNRSATTVEHLAIRCGWQARAPVIADIITMYSG 341

Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++  A+VFC T+   ++   VL   L Q    L G++ Q +R   L+  RDG  +V +AT
Sbjct: 342 QHGRAMVFCETKKEANQL--VLEGVLKQEAQVLHGDIPQAQRELTLKSFRDGNIQVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQR 354
           DVAARG+D+P+++LV+  E  S+ ++ +HRSGRTGRAGR G+ V     N       ++R
Sbjct: 400 DVAARGLDIPEVDLVVQCEPPSDVDSYIHRSGRTGRAGRTGVCVCFYKPNREQDLRFVER 459

Query: 355 RAERLFREAN 364
           RA   FR+ N
Sbjct: 460 RAGIKFRQIN 469


>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 201/369 (54%), Gaps = 23/369 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +  A+ +  Y + T +QE  + P L  KDV   AQTG+GKT AF + + 
Sbjct: 1   MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM 60

Query: 60  STLL---------AENDR----------FSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
             +L          E  +          + P +    L + PTRELA QV   +  L   
Sbjct: 61  ERILRARPIQGEVTEEQKALIEKRAYKDWKPQN--FVLILVPTRELAEQVQDNINKLSVD 118

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +G+      GG    +++  L+NG   +V TPGRL D  +   +++  ++A+V DEAD M
Sbjct: 119 SGLRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRM 178

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
            D+GF+DD+++IL   P++R++L+FSAT++  +      +  + V +NI+ +  +  ++ 
Sbjct: 179 FDMGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVK 238

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +   V   ++   ++++L+ H  K AI+F + + SV R  K L E+    +A+S  L+Q
Sbjct: 239 DQIFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQ 298

Query: 281 QERSNALQMMR-DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
            +R+  ++  + +    V +ATDVAARG+D+  +++V++ EL  + E+ +HR GRTGRAG
Sbjct: 299 AQRNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAG 358

Query: 340 RKGMSVFVI 348
             G +  ++
Sbjct: 359 TTGQAFSLV 367


>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
 gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
          Length = 509

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+ +N+  +
Sbjct: 70  ILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHA 128

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V
Sbjct: 129 KGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILV 188

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT 
Sbjct: 189 ATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATF 248

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA+    + + V +A  N     I      V  + +   +  ++     +  +V
Sbjct: 249 SDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLV 308

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D
Sbjct: 309 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLD 368

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVS 366
           + +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    
Sbjct: 369 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPR 428

Query: 367 VV---WEPAPSVEA 377
           +    +EP PS++A
Sbjct: 429 IAIAGYEPDPSIKA 442


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 196/346 (56%), Gaps = 18/346 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I  AL   GY N T +Q   +   L  +D+L+SAQTGSGKT AF + +        
Sbjct: 45  IAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVL------- 97

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRD 120
           DR S A++      AL + PTRELA QV   +   Y+K   G+     +GG   + +   
Sbjct: 98  DRLSRATSFDKLTKALILTPTRELAQQVHDSVR-TYSKDMRGLFCVPLVGGAPYNGQITA 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL DHI    +++S L+ +VLDEAD MLD+GF DDI  IL ++P  R
Sbjct: 157 LKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTDR 216

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-IL 239
           + +M SAT    +  +A ++ K+  RV+I  E+   + I+ +       D  N +++ I+
Sbjct: 217 QTIMCSATWDGPVGKIAASFTKNPERVSIKVES---AHIEEKVYYCDDFDHKNRLLDKIV 273

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+ S  +  K L E   +   L G+L Q +R+  +Q +R+G+ ++ +
Sbjct: 274 CQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+D+P +  VI+ +L    E+ +HR GR GRAGR G+++
Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAI 379


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY + T +QE  +   L  +DV+  A+TGSGKT AF L +   LL +       
Sbjct: 74  EATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQALLEK------P 127

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   A+ +APTRELA Q+ +  E L +   +  AV +GG+ + ++   L    H+VV TP
Sbjct: 128 SGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKPHVVVATP 187

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ + KG ++  LK +VLDEAD +LD+ F   I+ IL   P++R   +FSAT+S 
Sbjct: 188 GRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYLFSATMSS 247

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +   KD  RV++ S   Q  S +    + +  + +D   V+++     +  IVF
Sbjct: 248 KVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFIGQTTIVF 307

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R G   + +ATDVAARG+D+
Sbjct: 308 LRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVATDVAARGLDI 367

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P++++VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 368 PNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQ 407


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 190/347 (54%), Gaps = 2/347 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   + E G+   T +Q   +   L  KDVL  AQTG+GKT AFG+ L + ++ + 
Sbjct: 9   LPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPLIAQMM-QY 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A     L +APTRELA Q+   L+ L   T +   + +GGVS++ +   L  G  
Sbjct: 68  GRKPAAKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQISRLSRGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 128 ILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQERQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y    VR+ ++   +    I      +A +++ + +  +L  H  + 
Sbjct: 188 ATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQSVHFIAKAEKLSLLKELLAEHKDER 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ +ATDVAAR
Sbjct: 248 TLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKILVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  M
Sbjct: 308 GLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEM 354


>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN    
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--G 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE +  
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372

Query: 367 VV--WEPAPSVE 376
           V+  +EP P+ +
Sbjct: 373 VIPGFEPDPNAK 384


>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 480

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 204/372 (54%), Gaps = 9/372 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY+  + +QE  +   L + DVL  AQTG+GKT  F L L   +L++ +  +  
Sbjct: 14  KAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLLQ-ILSKKESNNTK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV + ++       +  AV  GGV ++ ++  ++ G  IV+ TP
Sbjct: 73  PEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKALIRKGVDIVIATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI  K ++ISH++  +LDEAD MLD+GF  DI  +L   P  R+ L+FSAT S  
Sbjct: 133 GRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSHRQNLLFSATFSDE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251
           I  L+         + +A  N   S++  + + +   DR   +++ L   G  +  +VF 
Sbjct: 193 IKKLSDGILNKPKLIEVARRN-TSSEMVSQVIHLVDKDRKKTLLSKLIKEGDWRQVLVFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++ ++ L        A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+ 
Sbjct: 252 RTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRVLVATDIAARGIDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
            L  V++ EL +  E+ +HR GRTGRAG +G +V ++     +  +  E+L + +   V+
Sbjct: 312 QLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLKGIEKLIKTSIKKVL 371

Query: 369 ---WEPAPSVEA 377
              +E  PS++A
Sbjct: 372 IEGFEVDPSIKA 383


>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 20/357 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L  
Sbjct: 219 PELL-KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 277

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G 
Sbjct: 278 ISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 337

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P        
Sbjct: 338 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 397

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  
Sbjct: 398 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKG 457

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+
Sbjct: 458 SEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLE 517

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 518 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 574


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 26  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 85  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 145 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 204

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 205 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 264

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 265 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 324

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 325 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 384

Query: 371 PAP 373
           PAP
Sbjct: 385 PAP 387


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/381 (31%), Positives = 204/381 (53%), Gaps = 15/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+N  I + I + LS  G  + T +QE  +    + KDV+  AQTG+GKT+AF L +
Sbjct: 1   MKDFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E++          L + PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISLESNFVQ------VLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    +++ TPGRL DH+    + +  LK +VLDEAD+ML +GF++++E I++ + K
Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIV 236
           K + L FSAT++  +  LA  Y KD   V++ +E     +I  +  +V  +DR   +++ 
Sbjct: 175 KYQTLCFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNI--KQFVVETTDRRKQDSLC 232

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       AI+FC T+  V    + L +  +    L G+L+Q +R   ++  ++   +
Sbjct: 233 KVLDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQ 292

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  
Sbjct: 293 YLIATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLL 352

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           E + +E   ++   P  +VE+
Sbjct: 353 ETIEKEIKFTI---PRRNVES 370


>gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 200/359 (55%), Gaps = 13/359 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + LYA+    V+ CI GGV  + + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-LYARDLKFVSACIFGGVGTNPQVQAMARGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  + + + + +++     + 
Sbjct: 192 ATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLLAHLITVGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 252 VLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++  V P  + + +  ER+ R+
Sbjct: 312 GLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTRQ 370


>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 446

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/377 (33%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+ +N+
Sbjct: 10  PEIL-RAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLV-QNE 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +    P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      L +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
              +    +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 191/358 (53%), Gaps = 4/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +A +  G      +Q+  + P L   D+L  AQTGSGKT AF L + S ++   
Sbjct: 33  ISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSKIIGLG 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P +A  AL + PTRELAVQ+ + +  L     V  A+ +GGVS H + + +  G  
Sbjct: 93  TKRRPRTA-RALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRMAQGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R   + +S    +VLDEAD MLD+GF +D+  I  ++   R+  +FS
Sbjct: 152 VLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQTALFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA +  K+ VR+ ++ +    ++I    ++     +   +  +L       
Sbjct: 212 ATMPREIEALASSLLKEPVRIEVSPQGTTAAEIRQSVIMARTKQKRKLLSEMLADEKMAQ 271

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R TK L    FQ   + G  SQ  R  AL   R+G  R+ +ATD+AAR
Sbjct: 272 VIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILVATDIAAR 331

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAERLFR 361
           GID+P +  V++ +L    E+ +HR GRTGR G +G ++ +  P  +   R+ ER+ R
Sbjct: 332 GIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQVERVIR 389


>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 446

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+ Y   T +QE  +   L  +D++ SAQTG+GKT  F L L   LL+EN       
Sbjct: 50  AITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLLQ-LLSENQSLIKGR 108

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 109 RPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMMKLRGGVDILVATP 168

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      ++++ ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S  
Sbjct: 169 GRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAKRQNLLFSATFSND 228

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    +   + ++  N     I  R   V  S +   +  ++     +  +VF  
Sbjct: 229 IKLLAKKLLNNPAYIEVSPGNTTAKHITQRVHFVDKSRKRQLLSYMIGSQNWQQVLVFNR 288

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  
Sbjct: 289 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQ 348

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G ++ ++      + R  ERL +     +  
Sbjct: 349 LPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLLRDIERLLKNEIPRIAI 408

Query: 369 --WEPAPSVEA 377
             ++P P+++A
Sbjct: 409 DGYQPDPTIKA 419


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
 gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
           SAW760]
          Length = 689

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 195/343 (56%), Gaps = 15/343 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L +RG  +L  +Q +  +P    KDV+  AQTGSGKT++F L L   L AEN+R    
Sbjct: 80  EMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENER--KG 137

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P  + ++PTRELA+Q+  E  +     G    +C+ GGV +  +   LQ+G  ++VGT
Sbjct: 138 KNPRVICLSPTRELAIQIAEE--FTQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGT 195

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR--RMLMF 185
           PGR+ D    + L +  ++ +VLDEADEML++GF++++  I+D    S PK+   + L+F
Sbjct: 196 PGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLF 255

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   +  +++ Y + DA  +++   N Q   +  + A  +    +   I +++R +G
Sbjct: 256 SATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYG 315

Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC T+A  +    +    +F+   L G++ Q++R   L   R+ +  V +ATD
Sbjct: 316 RTGRTIVFCDTKAECTD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATD 374

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+  ++L+I   +  +    +HR+GRT RAG++G ++
Sbjct: 375 VAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTI 417


>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
 gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 187/339 (55%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + GY + T +Q   L   L  +D++  A+TGSGKT AF L +   L  E       
Sbjct: 32  EALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQKLWEEPKGL--- 88

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  +APTRELA Q+ ++ E L A  G   AV +GG+ +  +   L    H+VV TP
Sbjct: 89  ---FACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIALAKRPHVVVATP 145

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL  H+   KG ++  LK +VLDEAD +LD+ F   I+ IL   PK+R   +FSAT++ 
Sbjct: 146 GRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKERTTYLFSATMTS 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + VRV ++ + +  S +    +LV L D+   ++ +       + I+F 
Sbjct: 206 KVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKVVMLIYLANSLAQNSIIIFT 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T       + +L    F  V L G+LSQ +R  AL   + G  ++ +ATDVA+RG+D+P
Sbjct: 266 RTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILVATDVASRGLDIP 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 326 SVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQ 364


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 227/420 (54%), Gaps = 22/420 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  ++       AP  L +APTREL++QV ++   +  K  + VA   GG   + +   +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKK--LTVACFYGGTPYNGQIDLI 458

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + G  I+VGTPGR+ DH++   L+++ ++ VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 459 RRGIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDS 518

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q +   +++ A+    S R  
Sbjct: 519 EDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAA 578

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++++ Y G+    I+FC T+      +  L E + Q   +L G++ Q++R   LQ  
Sbjct: 579 VIGDVIQVYSGSHGRTIIFCETKKEAQELS--LNESIKQDAQSLHGDIPQKQREITLQGF 636

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G+  V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +    +
Sbjct: 637 RNGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQK 696

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQD--PLFLDSIQGDEKKMVD 405
             Q +  ++ R+A ++      PS   I     +DA R L    P  +++ +   +K++D
Sbjct: 697 KEQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLID 756


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 134/371 (36%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N       
Sbjct: 15  AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252
            TLA+    +  +V +A  N     +     LV    R   ++++L   G  +  +VF  
Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARGID+ +
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ER+  RE     +
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 DGFEPDPSIKA 384


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +   +  + D   
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+ 
Sbjct: 70  ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQIKKLKNNIHLVIA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT++
Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248
             +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       AI
Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG+
Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 191/351 (54%), Gaps = 7/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           IP+ I + +S+ GY + T +Q   +   ++ +D++  A+TGSGKT+AF + L   +  L 
Sbjct: 9   IPENILKIISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVWIDSLP 68

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            N R   A   P A+ +APTRELA Q+  E+    +  G+     IGG S   +   L+ 
Sbjct: 69  RNIRVEDADKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRM 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D I  + L +S    +VLDEAD M+D+GF  +++ IL   P  R+ +
Sbjct: 129 GCEIVIATPGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMP-FRQTV 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MF+AT+ P +  +AK + +    V I S  +    I  +A  V    +   +++IL    
Sbjct: 188 MFTATMPPPVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKKMISILEDEN 247

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF + +       + L ++ +  ++L G   Q +R  AL  +++G   V +A
Sbjct: 248 CLEQGPVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVLVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           TDVA RGID+ D+ L+++ +++ N E+  HR GRTGRAG+ G +V  + Q+
Sbjct: 308 TDVAGRGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQD 358


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 206/384 (53%), Gaps = 27/384 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           QVI E ++   Y++ T VQ+  L     ++D++  AQTGSGKT AF L + + L  +   
Sbjct: 167 QVIKENVTRAQYIHPTPVQKYALPIISAKRDLMACAQTGSGKTAAFLLPILNMLFEDKHC 226

Query: 69  FSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +P ++       P+AL +APTREL+ Q+  E      ++ +   V  GG S+  + R+L
Sbjct: 227 ENPEASTLNCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGGASILAQIREL 286

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK- 178
            +G +++V TPGRL D +    +++  ++  VLDEAD MLD+GF   I  I++    P  
Sbjct: 287 SHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRRIVEQHGMPPA 346

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ LMFSAT    I TLA+++    + + +      + +I    + VA  D+ + +V 
Sbjct: 347 GKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVADKDKPDMLVR 406

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+       A+VF  T+       K L +  F V ++ G+  Q ER +ALQ  R GR  
Sbjct: 407 LLQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHALQSFRSGRTP 466

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IAT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G+ G             A
Sbjct: 467 ILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQSG------------SA 514

Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380
              F E N +VV +    VE +RE
Sbjct: 515 TSFFSEKNQNVVRD---LVELLRE 535


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 472

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 176/322 (54%), Gaps = 6/322 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQE ++   L   D++V AQTGSGKT AF + +   L+A  +      A  AL + PT
Sbjct: 26  TEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPIIENLIANEN------AVQALVLTPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQV      L     +      G   +  ++  L    HIVVGTPGR  DHI    
Sbjct: 80  RELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQLSQRVHIVVGTPGRTLDHIEKGN 139

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+IS +K +++DEADEML++GF D++E I+   PK R+ LMFSAT+S  I  L   Y   
Sbjct: 140 LDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLRQTLMFSATLSYEIKELINKYMFS 199

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
              + +  E    + I+ +   +  + + N + ++++      AI+FC T+ +V+     
Sbjct: 200 PKLIELTPETLTVAKINQKYYEIDENLKYNLLEDLIKTEDITKAILFCRTKKNVAYLASR 259

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           +    + V  + G++ Q +R +AL+  ++ + +  +ATDVAARGID+ ++  V + ++  
Sbjct: 260 MRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVATDVAARGIDVNNVSHVFNYDIPL 319

Query: 324 NPENLLHRSGRTGRAGRKGMSV 345
             E  +HR GRTGRAG  G ++
Sbjct: 320 ELEAYVHRIGRTGRAGSSGEAI 341


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 190/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L          R
Sbjct: 15  AIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFPAGHPDREQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+    V+ CI GGV ++ + + L  G  +
Sbjct: 75  HGPKQ-PRVLVLTPTRELAAQVHDSFK-IYARDLKFVSACIFGGVGMNPQVQALAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++SH++ +VLDEAD MLD+GF  D++ +L   P +R+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARLPAQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +A S +   + +++     + 
Sbjct: 192 ATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKVRILVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW]
 gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW]
          Length = 528

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 182/335 (54%), Gaps = 4/335 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+SE GY   T +QE  +   L+ +DVL  AQTG+GKT +F L +   L     
Sbjct: 10  PEVL-QAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMIEILAQGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    E       + +A+ IGG S   + + L+ G  +
Sbjct: 69  R---ARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVKKLERGVDV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGR+ D      + +S +K +V+DEAD MLD+GF  DIE I+   PK R+ L FSA
Sbjct: 126 LIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKLRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ P I  LA  +  +   + +A      + +     +    D+   + ++L+    KNA
Sbjct: 186 TMPPEIRRLADQFLMNPREITVAPPASPAATVTQALAVAYDEDKRKVLRHLLQTEDVKNA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            +FC+ +  V    + L+ H F   AL G++ Q +R+  L+  + G   + + +DVAARG
Sbjct: 246 FIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLVCSDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ID+  +  V + ++  N E+ +HR GRTGRAG  G
Sbjct: 306 IDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTG 340


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +   +  + D   
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+ 
Sbjct: 70  ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT++
Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248
             +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       AI
Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG+
Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|332520339|ref|ZP_08396801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043692|gb|EGI79887.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 373

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 193/351 (54%), Gaps = 12/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           ++L E      T +QE  +   ++ K D +  AQTG+GKT A+GL +   + A       
Sbjct: 15  KSLKELDIKTPTEIQEQAIPILIKSKVDFVGLAQTGTGKTAAYGLPVLHKVDANKKSVQ- 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 L IAPTREL  Q+ ++L     Y    + V    GG  +  +  +L+   HI+V
Sbjct: 74  -----GLIIAPTRELVQQIKKQLFKFTKYNDKKIFVEGVYGGEKIDIQISNLKRPTHIIV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188
            TPGRL D +    +++ H+  +VLDEADEML +GF+ D+  ILD++ K  R   +FSAT
Sbjct: 129 ATPGRLVDLLDKNIIDLKHINTLVLDEADEMLSMGFKKDLNIILDATTKSARNTWLFSAT 188

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +   +  +   Y  KDA RV +   +  +++I +  V   + D+ + I+ +L     +  
Sbjct: 189 MPTDLKAIVNRYISKDAARVEVNRNSIVNANISHHFVQTPIVDKAHTIMRLLDDRADERG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+A      + L +  F V AL G+++Q+ER   ++  ++   ++ I+TDV+ARG
Sbjct: 249 IIFCRTKAGTQALKQQLQKEGFNVDALEGDMTQKERDKVMRAFKNTNLQILISTDVSARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           ID+ +L  +IH +L  + E   HRSGRT RAG+KG S+  V+P  +++ AE
Sbjct: 309 IDVNNLAFIIHHQLPEHIEYYTHRSGRTARAGKKGESIALVLPSELKKVAE 359


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 451

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+ +N+  +   
Sbjct: 15  AVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    + + V +A  N     I      V  + +   +  ++     +  +VF  
Sbjct: 194 IKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +
Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 AGYEPDPSIKA 384


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  +H++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+     ++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKAIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ + +   L 
Sbjct: 172 QVLMFSATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQESIHVSDKEKFSELTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L     +  A+ G+LSQ++R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIR 345


>gi|183234688|ref|XP_649929.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169800959|gb|EAL44543.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 723

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 195/343 (56%), Gaps = 15/343 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L +RG  +L  +Q +  +P    KDV+  AQTGSGKT++F L L   L AEN+R    
Sbjct: 80  EMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAENER--KG 137

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P  + ++PTRELA+Q+  E  +     G    +C+ GGV +  +   LQ+G  ++VGT
Sbjct: 138 KNPRVICLSPTRELAIQIAEE--FTQCSCGKFKVICVYGGVDIQGQINKLQSGVDVIVGT 195

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR--RMLMF 185
           PGR+ D    + L +  ++ +VLDEADEML++GF++++  I+D    S PK+   + L+F
Sbjct: 196 PGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTVQTLLF 255

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   +  +++ Y + DA  +++   N Q   +  + A  +    +   I +++R +G
Sbjct: 256 SATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADLIRVYG 315

Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC T+A  +    +    +F+   L G++ Q++R   L   R+ +  V +ATD
Sbjct: 316 RTGRTIVFCDTKAECTD-CAIAINPIFECQQLHGDIQQKQREQTLNGFRENKFNVLVATD 374

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+  ++L+I   +  +    +HR+GRT RAG++G ++
Sbjct: 375 VAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTI 417


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 124/366 (33%), Positives = 197/366 (53%), Gaps = 20/366 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75
           YV  T VQ   +   L E+D++  AQTGSGKT AF   + S ++     E  R S A  P
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            A+ ++PTRELA Q+  E +    +TGV V V  GG  +H++ R+L+ G  I+V TPGRL
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191
            D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+  R+ ++FSAT   
Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----- 246
            I  LA ++  + + + +         I  R   V  SD+ + ++++L  H  +      
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL--HAQRETQDKQ 408

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         L  + F   ++ G+ +QQER  AL+  + GR  + +ATDVA
Sbjct: 409 SLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVA 468

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           ARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N   + R    L +
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQ 528

Query: 362 EANVSV 367
           EAN  V
Sbjct: 529 EANQEV 534


>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 504

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 186/343 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+++ GY   T VQ   +   L   D+L  AQTG+GKT  F L +   L + 
Sbjct: 16  NLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVLHLLNSR 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 A  P  L + PTRELA QV   ++       +   V  GGV+++ + + L+   
Sbjct: 76  PAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIKSLRGQV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+  K L++S ++ ++LDEAD MLD+GF  DI+ IL   PK R+ L+F
Sbjct: 136 DILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKTRQNLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I TL+     +   V +A  N     +     +VA   + + + ++++++  K
Sbjct: 196 SATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQKLKSHLLSHLIKHNDWK 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L        A+ G  SQ  R+ AL   +DG   V +ATD+AA
Sbjct: 256 QVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMPVLVATDIAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 316 RGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLV 358


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 11/333 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   L   L  +D+L  A+TGSGKT AF L +    LA+         PLAL 
Sbjct: 155 YTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQHCLAQPP-IRRGDGPLALV 213

Query: 80  IAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +APTRELA Q+ +E++ +  +  G   A+ +GG +++ +R +L+ G  IVV TPGR  DH
Sbjct: 214 LAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQRSELRAGVEIVVATPGRFIDH 273

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++    ++S +  VVLDEAD MLD+GF   I  ++ S PKK + L+FSAT+   I  LA+
Sbjct: 274 LQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEIEALAQ 333

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249
            Y  + +RV +   +   +++      +   ++  +++ +L    +++          IV
Sbjct: 334 EYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLALLVDEHSQSLDTNQPPPLTIV 393

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +A     T  L E   +  AL G  SQ ER  AL+  R G   + +ATDVA+RG+D
Sbjct: 394 FVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVASRGLD 453

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  VI+ +L    E+ +HR GRTGRAG  G
Sbjct: 454 VTGVAHVINLDLPKTMEDYVHRIGRTGRAGASG 486


>gi|312140568|ref|YP_004007904.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889907|emb|CBH49224.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 499

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 202/396 (51%), Gaps = 21/396 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I  AL++ G      +Q   L   L  +DVL   +TGSGKT+AF + LA+ 
Sbjct: 27  FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R      P  L +APTRELA Q+   LE L    G+ V    GGVS HR+ + L
Sbjct: 87  LAGGKRR---PGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKAL 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  IVV  PGRL D ++ + + +  ++  +LDEAD M DLGF   +  IL ++P   +
Sbjct: 144 ESGVDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQ 203

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   +  L K + ++ V  ++   N   + + +    VA  +   A+V+ L  
Sbjct: 204 RLLFSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTHHVYDVAGVEAKKALVHKL-A 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    I+F  T+    +  + L E     V L G LSQ  R   L    +G ARV +AT
Sbjct: 263 SGQGRRILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ + ++ELV+H +  +  +  LHRSGRT RAG  G  V ++    ++    L R
Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382

Query: 362 EAN---------------VSVVWEPAPSVEAIRERD 382
           +A+               V++V EPAP V    + D
Sbjct: 383 KASIKVTPVQVTADSEHVVTLVGEPAPHVAPAPKTD 418


>gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 515

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 3/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + L++ G  +   +QEA L   L   DVL   QTGSGKT+AF L L + L A+ 
Sbjct: 10  VPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLVARL-ADR 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P AL +APTRELA Q+ + +E L    G+   V  GGV+  R+ + +  GA 
Sbjct: 69  PQRRKARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKAMNEGAD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL D I+ K +++S L+  VLDEAD M D+GF   +  I+D  P   + ++FS
Sbjct: 129 IVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTGIQHMLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +AK Y       ++ +     + +++   +++  D+ + ++ +L   G   
Sbjct: 189 ATLDNGVDKVAKRYLSHPTIHSVDAPKAAVNTMEHHVFVISNDDKKD-LIRVL-AQGTAR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    +    L++     V L G LSQ  R   L     G A+V +ATDVAAR
Sbjct: 247 RIMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASGEAKVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ +  +ELV+H +  +  +   HRSGRT RAG  G  V +   + Q     L ++A + 
Sbjct: 307 GVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQGDVSTLLKQAGLK 366

Query: 367 VVWE 370
           V +E
Sbjct: 367 VPFE 370


>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 526

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 205/374 (54%), Gaps = 7/374 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ + G+   + +Q A +   L+ KDV+  AQTG+GKT AFG+ +   +        
Sbjct: 13  VQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPIIEMM-------G 65

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  EL  +     V      GG S+  + R LQ G  +V+G
Sbjct: 66  TGRHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQIRALQQGVGVVIG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+R   L +  ++ VVLDEADEMLD+GF +DIE IL  +P++R+ L+FSAT  
Sbjct: 126 TPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQERQTLLFSATFP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA  Y K+   V +         ID     V   ++  ++  I+        I+F
Sbjct: 186 HEVKQLAVRYMKNPEHVTVNRGEMTVPLIDQIYYKVLERNKLESLCRIIDSEDVSLGIIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V   T+ L    + V  L G+LSQ +R   ++  R+G     +ATDVAARGID+
Sbjct: 246 CRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFLVATDVAARGIDV 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++  VI+ ++  +PE+ +HR GRTGRAGR+G+++ ++     +  +++ RE    +V  
Sbjct: 306 TNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQIERETQAPLVGR 365

Query: 371 PAPSVEAIRERDAQ 384
             P++  + ER A+
Sbjct: 366 EVPTLADVAERVAE 379


>gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
 gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
          Length = 451

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 195/351 (55%), Gaps = 16/351 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70
           A+++ G+   + +Q   L   L   D+L  AQTG+GKT AF  A+   LL    E +R+ 
Sbjct: 83  AIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDDLLKNPLEGERY- 141

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
            A    AL IAPTREL VQ+  + + L   T + V   +GG+   ++++ ++N    I+V
Sbjct: 142 -AGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQGVRNKFVDILV 200

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSA 187
            TPGRL D    K +++  ++ +VLDEAD MLD+GF   +  I+  +P+   R+ L FSA
Sbjct: 201 ATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRCENRQTLFFSA 260

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LA+ + ++   V I  E+     ++    LVA S++   + N+ R    ++ 
Sbjct: 261 TFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAASEKYKLLTNLARQPDVESL 320

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF + R    R  + L +H F    LSGE++Q +R   L   + G+ ++ +ATDVA RG
Sbjct: 321 IVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSGKIKILVATDVAGRG 380

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           I + ++  V++  L   PE+ +HR GRTGRAG+KG+S+        F++P+
Sbjct: 381 IHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDAFLLPE 431


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 189/342 (55%), Gaps = 2/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ E+GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L + L+ + 
Sbjct: 8   LPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLANLM-KG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R + A+    L + PTRELA Q+   +        +  AV  GGV ++ + + L+ G  
Sbjct: 67  ER-AKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P+KR+ L+FS
Sbjct: 126 VLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V ++++  N     +      V  + +   +  +++ +  K 
Sbjct: 186 ATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKENKWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   ++G+  V +ATD+AAR
Sbjct: 246 VLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+  LE V++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 306 GIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLV 347


>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
 gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
          Length = 515

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 194/353 (54%), Gaps = 10/353 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  I   + EA    GY N T +QE  +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 90  KTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPIL 149

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+ +P     AL +APTRELA Q+ +  E L +   +  A+ +GG+ +  +  
Sbjct: 150 QALL---DKPAPL---FALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAI 203

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH+ + KG ++  ++ +V+DEAD +LD+ F   +E IL   P+
Sbjct: 204 ALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPR 263

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++V+++S      S +    V +    +D  +V 
Sbjct: 264 ERRTFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVY 323

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  I+F  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 324 LCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREI 383

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +ATDVAARG+D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 384 LVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQ 436


>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 200/374 (53%), Gaps = 8/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+ +N+  +
Sbjct: 80  ILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHA 138

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V
Sbjct: 139 KGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILV 198

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT 
Sbjct: 199 ATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATF 258

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA+    + + V +A  N     I      V  + +   +  ++     +  +V
Sbjct: 259 SDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLV 318

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D
Sbjct: 319 FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLD 378

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVS 366
           + +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    
Sbjct: 379 IEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPR 438

Query: 367 VV---WEPAPSVEA 377
           +    +EP PS++A
Sbjct: 439 IAIAGYEPDPSIKA 452


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 193/349 (55%), Gaps = 2/349 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L+  G  + T +Q   +   L  +DVL  AQTG+GKT AFG+ L S +L +
Sbjct: 33  GLPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRML-D 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         L +APTRELA Q+   L+ L   T + V + +GGVS++ +   +  G 
Sbjct: 92  YGRKPAGKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRIARGT 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++F
Sbjct: 152 DILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQTMLF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A +Y K  VR+ +    +  + +      +A +++ + +  +L  H  +
Sbjct: 212 SATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLANHKDE 271

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  + +  +VL +  F   A+ G  SQ +R  AL   + G  +V +ATDVAA
Sbjct: 272 RTLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVLVATDVAA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V F  P  M+
Sbjct: 332 RGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEME 380


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 193/371 (52%), Gaps = 3/371 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I +A++  GY   T +QE  +   L  KD++ SAQTG+GKT AF L     L   +   
Sbjct: 11  LILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPALERLSVRSP-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P   P  L + PTRELA QV   +        V     +GG+    + + L     ++V
Sbjct: 69  IPGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQLLSRPVDLIV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    +N+S L+ ++LDEAD MLD+GF +D++ I  ++P  R+ L+F+AT+
Sbjct: 129 ATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANRQTLLFTATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAI 248
              +  LA+   KD VR+ IA +   H  I+ R  V   L  +   + +++       AI
Sbjct: 189 DDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTRMLQHLIADGTVTKAI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+       + L        AL G++SQ  R+  +  MR G+ R+ +ATDVAARG+
Sbjct: 249 IFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N     +R+ R    ++ 
Sbjct: 309 DVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLDRIERYTGQTLP 368

Query: 369 WEPAPSVEAIR 379
               P +E  R
Sbjct: 369 MHVIPGLEPTR 379


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N     +
Sbjct: 14  KAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SNGPRVRS 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V T
Sbjct: 72  NHIRALVLTPTRELAAQV-QENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGADVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK+R+ L+FSAT S 
Sbjct: 131 PGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQNLLFSATFSN 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK    + V +++   N     ++       +  +   +V +++    K  +VF 
Sbjct: 191 EIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQVLVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+P
Sbjct: 251 KTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 311 QLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 189/347 (54%), Gaps = 13/347 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF       LL   +  S
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65

Query: 71  P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P  +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+
Sbjct: 66  PDINAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT+
Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247
           +  +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       A
Sbjct: 186 NSEVKKLAYKNMRDPRLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG
Sbjct: 244 IIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           +D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/362 (34%), Positives = 205/362 (56%), Gaps = 23/362 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L ++G   L  +Q    N     KDV+  A+TG+GKT++F + L   L+  N        
Sbjct: 105 LKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVEKLIM-NRCKDYGRP 163

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  L +APTRELA+QV ++ + +   +  + +VCI GG    ++ R ++ G  IVVGTPG
Sbjct: 164 PKVLVMAPTRELAIQVRKDFQDI---SQGLSSVCIYGGTPYFQQERSMRGGVDIVVGTPG 220

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-----MLMFSAT 188
           R+ DH++   L +  ++ VVLDE D+MLD+GF   +E IL  +  + R      L+FSAT
Sbjct: 221 RIMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAYTEEREGPPQTLLFSAT 280

Query: 189 ISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
             P +   ++ Y + +  V++     S  R  + +++ A+    SDR   I N+++ +  
Sbjct: 281 CPPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSG 340

Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQVVA--LSGELSQQERSNALQMMRDGRARVCIA 300
           ++  A++F  T+   +    V+ E L Q  A  L G++ Q++R   L+  RDG  R  +A
Sbjct: 341 QHGRAMIFTDTKKDANEL--VVCEALQQQKAQVLHGDIEQRQREITLKAYRDGTVRCLVA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAE 357
           T+VAARG+D+P+++LVI     S+ ++ +HRSGRTGRAGR G+ V F  P+   M ++ E
Sbjct: 399 TNVAARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKVE 458

Query: 358 RL 359
           R+
Sbjct: 459 RV 460


>gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
 gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
          Length = 466

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 200/389 (51%), Gaps = 11/389 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  GY  +T +Q   L   L  KDV+  A+TGSGKT  F L L + L  +  R      
Sbjct: 23  LASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLNKLDVKRFRVQ---- 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV  E+  L      + V    GGV+   +   L++GAHI+VGTPG
Sbjct: 79  --TLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLEHGAHIIVGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+R   LN+ +L  ++LDEAD MLD+GF+  ++ I+   P++R+ ++FSAT    I
Sbjct: 137 RVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQTMLFSATYPEKI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A+   +  V V +   +   S ++    +     R  A+  +L+ H  +  ++FC+T
Sbjct: 197 DKIAQRIMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLLQAHQPETTLIFCNT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R    L    ++  AL G+L Q++R   L    +    V +ATDVAARG+D+  L
Sbjct: 257 KIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVLVATDVAARGLDIDAL 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ++VI+ +++   E   HR GRTGRAG +G++  +  Q    + + L             P
Sbjct: 317 DMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDLLEDYLEQKFNRGDLP 376

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            +E +RE     +   P+    I G +K+
Sbjct: 377 HLELLRE----PVFYPPMVTIHIGGGKKQ 401


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 11/346 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +   +  + D   
Sbjct: 13  IIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPMFENISPDID--- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+ 
Sbjct: 70  ---AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FSAT++
Sbjct: 127 TPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFSATMN 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248
             +  LA    +D   + I  E     +I  + VL+  +DR     +  IL       AI
Sbjct: 187 SEVKKLAYKNMRDPKLIIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG+
Sbjct: 245 IFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARGL 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++ Q
Sbjct: 305 DITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQ 350


>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 435

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 198/372 (53%), Gaps = 11/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    AEN    
Sbjct: 15  AVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENR--G 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 73  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 133 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 193 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+
Sbjct: 253 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVS 366
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE +  
Sbjct: 313 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREISQE 372

Query: 367 VV--WEPAPSVE 376
           V+  +EP P+ +
Sbjct: 373 VIPGFEPDPNAK 384


>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 446

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 181/341 (53%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ +GY   T +Q   +       D+L  AQTG+GKT AF L +   +L EN       
Sbjct: 15  AIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLGENIPPEKRR 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV  ++     +  +   +  GGV++  +   L  G  IVV TPG
Sbjct: 74  RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     +N+S +K +VLDEAD MLDLGF D I+ + +  P KR+ L+FSAT S +I
Sbjct: 134 RLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKRQTLLFSATYSQSI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252
             LA        R+ +A  N   +D   +A+      R   +++ L   G  N + VF  
Sbjct: 194 KQLADELLNKPRRIEVARSN-IAADAVTQAIYQVEKSRKREMLSFLISRGKWNQVLVFAR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    + T+ L     +  A+    SQ  R+  L   R G  RV +ATDVAARG+D+  
Sbjct: 253 TRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRVLVATDVAARGLDIEQ 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           L  V++ +L   PE+ +HR GRTGRAG++G+++ ++    Q
Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQ 353


>gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 569

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 168/556 (30%), Positives = 262/556 (47%), Gaps = 39/556 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L + GY     +Q   +   L   DVL  A TGSGKT AF L L   +   N    
Sbjct: 17  IVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLHNVDINN---- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             S    L I PTRELA+Q+GR       Y K   VV +  GG S   +   L    HI+
Sbjct: 73  --SCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTL-YGGQSYGIQLSALNKRPHII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+     N+S LK +V+DEADEML +GF +D+E I+ + P KR+  +FSAT
Sbjct: 130 VSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I  ++  +  +   V I S     ++I   Y  V   ++  + A++  L       
Sbjct: 190 LPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHE-ALMRFLETEDFDA 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+ +    +++L    +   AL+G+++Q  R   L  +R G+  + IATDVAAR
Sbjct: 249 AIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDILIATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  + LVI+ ++  N +  +HR GRTGRAG  G S+  +     R    + R+  + 
Sbjct: 309 GLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRHIERKIKLK 368

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAGF 420
           +     P+ E + +    R      +  S + D+  +   LL +  P      E +AA  
Sbjct: 369 IPEVQYPTSETLFDCRLSRFTNKVEYQLSTENDDLDVYRSLLPQIKPRRDLTTENLAAVL 428

Query: 421 LRI---HRAGLCAPEEI------TPVSLVSGRDR-FRDDSRAFKVGGGSR--DNFKGSSW 468
           L+I   +R  +  P+ I      + + + S R   FR ++R  K    S+  DN      
Sbjct: 429 LKIAQGNRPLVFPPDPIIKNKSVSKIRINSNRQNCFRVENRVIKTRLQSKISDNMDA--- 485

Query: 469 FSLSVGSKQKAEARWLMPMLCRS-SGINRQSIGAIRVQPDLTFVEV-----SADGVDLLR 522
           + +SVG     + R ++ +L  + + I    IG I++      +E+     S   +  L 
Sbjct: 486 YHISVGRNDGVKIRHIIRVLSNNIANIRYHEIGNIKLFSFHAIIELDKGLSSNKILTQLS 545

Query: 523 RTVKLDKGIQLKYLGG 538
               L+K I +K+LG 
Sbjct: 546 HARILNKPINMKFLGN 561


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + RD++ G +IV GT
Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNIVCGT 342

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 343 PGRLLDMIGRGK-VGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 401

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   ++++L+  G +
Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 461

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V F  P    + A  L
Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDGDSQLASSL 576


>gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 709

 Score =  199 bits (507), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 20/357 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L  
Sbjct: 298 PELL-KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 356

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G 
Sbjct: 357 ISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 416

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P        
Sbjct: 417 EVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 476

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  
Sbjct: 477 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKG 536

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+
Sbjct: 537 SEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLE 596

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 597 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 653


>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
 gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 616

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 178 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 237

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 238 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 297

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 298 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 357

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 358 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 417

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 418 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 476

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 477 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 529


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P +  V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGISHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 375

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 188/333 (56%), Gaps = 7/333 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  +L   G    T +QE  +   L   DV+  AQTG+GKT+AF L +    L + D  +
Sbjct: 13  VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPI----LEKVDVNN 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P +   AL + PTRELA Q+ +E++ L      + V    GG  V+ + + L+   H++V
Sbjct: 69  PETQ--ALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLKGAQHVIV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S +  +V+DEAD+ML +GF  DI+ I       R+ ++FSATI
Sbjct: 127 ATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQTMLFSATI 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LAK Y K    + IA +    + I++ AV      ++  ++++++ H    AI+
Sbjct: 187 PNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHLIKEHNPYLAII 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+A V + T+VL     +  AL G++ Q +R+ A++  R+ + +  +ATDVAARG+D
Sbjct: 247 FCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  V + ++  + E  +HR+GRTGRA   G
Sbjct: 307 VEGVTHVYNYDIPQDLETYIHRTGRTGRASGSG 339


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 201/382 (52%), Gaps = 6/382 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   T +Q+  +   L+  D+L  AQTG+GKT AFGL LA  LL E     P 
Sbjct: 15  KAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPLAHRLLEEGRTPEPK 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +A  AL +APTREL  Q+   L     KT + V   +GGVS++ + + L  G  I+V TP
Sbjct: 75  AA-RALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQIKRLGRGTDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  K ++++    +VLDEAD+MLDLGF   +  I     +KR+ L+FSAT+   
Sbjct: 134 GRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAEKRQTLLFSATMPRQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+ Y     RV +A   +    +      +    +   +V+++        +VFC 
Sbjct: 194 IEDLARTYLHKPERVEVAPAGKTAERVAQSVHFMDQKAKSGFLVDMICERADDTCLVFCR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L        ++ G  SQ +R  A++ +R+G  +V +ATDVAARGID+P 
Sbjct: 254 TKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVLVATDVAARGIDIPG 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR-EANVSVV 368
           +  V + EL    E  +HR GRT RAG  G ++ +       + R+ E+L   E  V+  
Sbjct: 314 VSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQIEKLTGIEIEVASG 373

Query: 369 WEPAPSVEAIRERDAQRILQDP 390
             PAP V+ +R+   QR  Q P
Sbjct: 374 EAPAP-VKLVRKGRNQRSGQRP 394


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 189/351 (53%), Gaps = 13/351 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G +    +QE  L   L  +D++  A+TG+GKT AFG+A+   +        
Sbjct: 50  IADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAMLQRVGKPRKN-- 107

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELAVQV  +L     K G  +    GG +   +   L+ G  ++VG
Sbjct: 108 -RKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQVEALKQGVDVIVG 166

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++ K L++  +  +VLDEAD MLDLGF  DIE I+   P+KR+ ++FSAT+ 
Sbjct: 167 TPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPEKRQTMLFSATLP 226

Query: 191 PAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
             I  L++ Y      V        A    Q +   +RA  +   D+   +  +L+  G 
Sbjct: 227 GEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRM---DKIEIVGRLLQCDGR 283

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++FC T+ +     + L E  F   A+ G+L Q +R  AL+  R+G+  V +ATDVA
Sbjct: 284 GLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKIDVLVATDVA 343

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ARGID+ D+  V++ +   + +  +HR GRTGRAG+ G++V FV  +++ R
Sbjct: 344 ARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTR 394


>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  199 bits (506), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 224/396 (56%), Gaps = 17/396 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +   LL   
Sbjct: 17  IPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQHLLNVK 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++     A   + I PTRELA QV   L+ +  A  G++  + +GG+ V ++   L    
Sbjct: 76  EK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSVQLAKRP 132

Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           H++VGTPGR+  HI+  KG+  +I  +K +V+DEAD++L++ F ++I+++++  P +R  
Sbjct: 133 HVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQRTT 192

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239
           ++FSAT+S  +  L +      V+  I  E +++  +D        +    RD  +++IL
Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K+ I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G+  + +
Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356
           ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q    + +R 
Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370

Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           E +  ++ N   V E      + +  DA RI+   L
Sbjct: 371 ETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 182/334 (54%), Gaps = 4/334 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  Y   T +Q   +   L  +DV+ SAQTG+GKT AF + +   L  E DR     
Sbjct: 15  ALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQHL--ERDRRYGGK 72

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             +  AL + PTRELA+Q+G  L      TG+   V  GGV   ++   L+ G  I+V T
Sbjct: 73  RGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVEALRRGVDILVAT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    +++S ++  VLDEAD MLD+GF  DI  I+   P +R+ L FSAT+  
Sbjct: 133 PGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAERQSLFFSATMPD 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +L++    D V+V ++  +     I         SD+++ +++IL+       ++F 
Sbjct: 193 DIVSLSRKILSDPVKVAVSPVSSTAETIRQYLYYTNKSDKNDLLLHILKDPDMDQVLLFA 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R  K L +      A+ G  SQ +R  AL   +DG+ RV +ATD+AARGID+ 
Sbjct: 253 RTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVRVLVATDIAARGIDID 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L  V++ ++ +  E  +HR GR+GRAG +G+S+
Sbjct: 313 QLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSI 346


>gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4]
 gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 468

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    + + L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL L + 
Sbjct: 13  FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120
           L  +  R         L + PTRELA QV  EL  L      + +    GGV +  +   
Sbjct: 73  LDVKRFRIQ------TLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L++ ++  +VLDEAD ML++GF+ +++ I+   P++R
Sbjct: 127 LEHGAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRER 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +  D + V +  ++   S   +       +DR  A+  +L 
Sbjct: 187 QTLLFSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLL 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  ++A+VFC+T+         L    F VVAL G+L Q++R   L    +  A V +A
Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           TDVAARG+D+  L++V++  ++ + E  +HR GRTGRAG KG
Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKG 348


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 192/348 (55%), Gaps = 16/348 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67
           ++LS  G    T +QE  +   L  KD++ S++TGSGKT+AF L      +++  L++ D
Sbjct: 14  QSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIISTKALSKRD 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTRELA QV  +L  L A T       +GG + + + + L    H 
Sbjct: 74  -------PRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAKALARDPHF 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFS 186
           VV TPGRL DH+     +++ L+ ++LDEAD MLDLGF D ++ I  ++  KRR  LMFS
Sbjct: 127 VVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAINAAADHKRRQTLMFS 186

Query: 187 ATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244
           AT++   I  +A    KD   V + + N ++ DI  +  L    D   A++ +IL+    
Sbjct: 187 ATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDHKEALLQSILKRGEQ 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F +TR    R  K LAE  F   +LSG+L+Q  R+  +     G   + + TDVA
Sbjct: 247 KQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQDILVTTDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +RG+DL ++ LVI+ ++    E  +HR GRT RAG KG ++ FV P++
Sbjct: 307 SRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKD 354


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 184/338 (54%), Gaps = 6/338 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E G+   T VQ   +   L  +D++V ++TGSGKT  FG+++   +  + D   
Sbjct: 14  ILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVSMLQMIDPKAD--- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELAVQV  EL+ +            G  S++ E + L+ G  IV G
Sbjct: 71  ---GPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVEIQALRRGISIVTG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  DHI    L   +++ ++LDEAD MLD+GF D +  I+ + PK R  L+FSATI 
Sbjct: 128 TPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLPKDRVTLLFSATIP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  + K Y K  + + I S+ +    I+     +    ++  + ++L     ++ ++F
Sbjct: 188 PEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNHLLLIERPESCMIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+ +V +    L+   +   +L G++ Q  R   +Q  + G   + +ATDVAARGI +
Sbjct: 248 CNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHLLVATDVAARGIHI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L LVI+ ++    +N +HR GRTGRAG  G ++ ++
Sbjct: 308 DNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLV 345


>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 714

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 191/357 (53%), Gaps = 20/357 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L  
Sbjct: 303 PELL-KAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 361

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G 
Sbjct: 362 MSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGC 421

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P        
Sbjct: 422 EVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 481

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V VNI +  +    I    ++V  
Sbjct: 482 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMVKE 541

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  SQ++R  +L+
Sbjct: 542 SEKFFKLQRLLDEAGDKTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQREISLE 601

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R  +  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 602 GFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVAT 658


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 198/354 (55%), Gaps = 8/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q I +AL   GY     VQE ++   L + D +V ++TGSGKT +F + +   L  E
Sbjct: 7   NLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPIIQNL--E 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  SP     AL + PTRELA+Q+ ++ + +     +      G      ++ DL+   
Sbjct: 65  IDERSPQ----ALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKEDLKQRC 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+GTPGR+ DH++ + L+ S +K VVLDEADEML++ F D+++ IL   PKK    +F
Sbjct: 121 HVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKHVTCLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++K Y     +V++ S N+   +I   A  V    ++  ++++L     +
Sbjct: 181 SATYPAVIQRMSKKYLYKPAKVDLTSTNK--PNILEEAYHVNEEHKELFLLHLLALKKPE 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC T+A V      L ++   V  + G + Q+ER + ++  + G+ R+ + TDVA+
Sbjct: 239 SCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVCTDVAS 298

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGID+  +E++I+ ++ S  E   HR GR+GR   +G+++ ++ +    R E+L
Sbjct: 299 RGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKL 352


>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 540

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 197/373 (52%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  HGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++  +     +
Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVSDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 375 RTVLAGFEPDPTI 387


>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
          Length = 618

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 239

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   +++Q   +   L  +DV+ +AQTG+GKT  F L +   +L++  R  
Sbjct: 12  ILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPILE-ILSQGPR-P 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+    L + PTRELA Q+   +E       +   V  GGV ++ +   L+ G  I+V 
Sbjct: 70  RANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRLRRGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+    D V +++   N     ++     V    +   + ++++ +  K  +VF
Sbjct: 190 DDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHLIKENDWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++ TK L E      A+ G  SQ  R+ AL   + G  R  IATD+AARGID+
Sbjct: 250 TKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRALIATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG +G ++ ++
Sbjct: 310 VQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLV 347


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 13/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL    Y + T VQ  ++   + ++D++V AQTGSGKT +FG+ +   +  E
Sbjct: 9   HLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVCDMVEWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   +P AL + PTRELAVQV  ++  +     +      G     +++ +L+   
Sbjct: 69  E------KSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKEELKQKT 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI  + L +  ++ +++DEADEML+ GF D++E I+   P  R  ++F
Sbjct: 123 HVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSDRVTMVF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y KD V V I S       I++  + V   D+ + + +I       
Sbjct: 183 SATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEVKQEDKISLLKDITVTENPD 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC T+  V      L    +    L G L Q++R   ++  + G  R  +ATDVAA
Sbjct: 243 SCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++ F  P       E  F +A 
Sbjct: 303 RGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATP------FEEKFLKAI 356

Query: 365 VSVVWEPAPSVEAIRERD 382
              +    P +EA  ++D
Sbjct: 357 ERYIGFEIPVIEAPSQQD 374


>gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 414

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 181/340 (53%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +AL   GY   T +Q+  +   L  KD++  AQTG+GKT AF + +   L  E
Sbjct: 7   NLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPILQMLSVE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELAVQ+G          G+  +V  GGVS   +   L+ G 
Sbjct: 67  QRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTDALEEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +N+ H+K  VLDEAD MLD+G   D++ I+   PK R+ ++F
Sbjct: 127 DILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKIRQTMLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P ++ L  +   D V+V +   +     I+     V   D+   +  +L+     
Sbjct: 187 SATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQAVYFVGKKDKKLLLTQLLKNKSIT 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    +  K LA+      A+ G  SQ  R  AL   +D + RV +ATD+AA
Sbjct: 247 SALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L  VI+ +L + PE  +HR GRTGRAG  G+++
Sbjct: 307 RGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVAL 346


>gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 510

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 188/333 (56%), Gaps = 7/333 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  +L   G    T +QE  +   L   DV+  AQTG+GKT+AF L +    L + D  +
Sbjct: 13  VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPI----LEKVDVNN 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P +   AL + PTRELA Q+ +E++ L      + V    GG  V+ + + L+   H++V
Sbjct: 69  PETQ--ALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLKGAQHVIV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S +  +V+DEAD+ML +GF  DI+ I       R+ ++FSATI
Sbjct: 127 ATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQTMLFSATI 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LAK Y K    + IA +    + I++ AV      ++  ++++++ H    AI+
Sbjct: 187 PNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHLIKEHNPYLAII 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+A V + T+VL     +  AL G++ Q +R+ A++  R+ + +  +ATDVAARG+D
Sbjct: 247 FCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  V + ++  + E  +HR+GRTGRA   G
Sbjct: 307 VEGVTHVYNYDIPQDLETYIHRTGRTGRASGSG 339


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 195/380 (51%), Gaps = 11/380 (2%)

Query: 7   IPQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +P  I  AL ER    G    T +Q   +   L  KDVL  AQTG+GKT AFGL L    
Sbjct: 9   LPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRF 68

Query: 63  LAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    +  P S  + AL + PTRELA QV   L+     + + +    GG S++ ++++L
Sbjct: 69  VDHPLQREPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH   K L + + +A+VLDEAD MLD+GF  DI+ +L     +R+
Sbjct: 129 RGGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQ 188

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT    I   A    ++ V V +A  N     ++     V    +   +  ++  
Sbjct: 189 TLFFSATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPVDKKRKRELLAYLIGS 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       + L     +  +++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 249 RNWQQVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  LE V++ ++    E+ +HR GRTGRAG+ G +V ++  + Q   E + R
Sbjct: 309 DVAARGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIER 368

Query: 362 --EANVSVVW----EPAPSV 375
             +  +   W    EP+P V
Sbjct: 369 LLDKRLPQEWLKGYEPSPVV 388


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 178/319 (55%), Gaps = 13/319 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWL 97
           DV+  AQTG+GKT+AF       LL   +  SP  +A   L I PTRELA+Q+  E   L
Sbjct: 41  DVIAEAQTGTGKTLAF-------LLPMFENISPDINAIQGLIITPTRELAIQITEEAMKL 93

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                + +    GG  +  + + L+N  H+V+ TPGRL DH+    LN   LK +VLDEA
Sbjct: 94  KEAKDLNILAAYGGKDIGSQIKKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEA 153

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DEML +GF++D+  I++++P+KR+ L FSAT++  +  LA    +D   + I  E     
Sbjct: 154 DEMLLMGFKNDVRSIIENTPRKRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLK 213

Query: 218 DIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +I  + VL+  +DR     +  IL       AI+FC T+  V    + L +  +    L 
Sbjct: 214 NI--KQVLIETTDRRKQEDLCKILDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLH 271

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G ++Q +R   ++  ++   +  IATDVAARG+D+  +  V + ++  N E+ +HR GRT
Sbjct: 272 GSITQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRT 331

Query: 336 GRAGRKGMS-VFVIPQNMQ 353
           GRAG KG + +FV P++ Q
Sbjct: 332 GRAGEKGYTFLFVAPKDEQ 350


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 184/333 (55%), Gaps = 7/333 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +++DV+  AQ+G+GKT  F +A+   +    D   P     AL
Sbjct: 61  GFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNI----DETIPEVQ--AL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV     IGG +V  ++R L++G H+VVGTPGR+ D 
Sbjct: 115 VMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVHVVVGTPGRVNDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L  +++K  VLDEADEML  GF++ I  +    P   ++++ SAT+   +  +  
Sbjct: 175 ITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVVLLSATMPSEVLEVTN 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  E      I    + V   + +   + ++        A++FC+TR  V
Sbjct: 235 RFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETLCDLYSTVNVTQAVIFCNTRRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 +++  + V  + GE+ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 295 DYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 354

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +L SN EN +HR GR+GR GRKG+++  I +
Sbjct: 355 NYDLPSNRENYIHRIGRSGRFGRKGVAINFITE 387


>gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760]
 gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760]
          Length = 518

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 213/394 (54%), Gaps = 7/394 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL E GY  +T++Q   +   L  KD++  A+TGSGKT+AF + +   L   
Sbjct: 63  NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   +   A+ I+PTRELA+Q    LE + A +     + IGG S  +E   L+ GA
Sbjct: 121 KIHFQTRNGTGAIIISPTRELAIQTFEVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 180

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DHI   K     +LK +V+DEAD ++++GF +++  IL+  PK R+ ++
Sbjct: 181 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 240

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT S  +  +A    K  V +N+ S++     S ++   VLV   DR   +   LR +
Sbjct: 241 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLVEAKDRFRLLYTFLRKN 300

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  +V  ++ +L      V AL G+L Q +R+         +  + I TD
Sbjct: 301 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 360

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P ++ +I  +L  +P++ +HR GRT RA  KG ++  +     R  E L  E
Sbjct: 361 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEVRILEYLKGE 420

Query: 363 ANVSVVWE-PAPSVEAIRERDAQRILQDPLFLDS 395
                 +E P   +  I +R+ +++++   +L++
Sbjct: 421 KIPLTQYEVPEKKIANI-QRELEKLVEKNYYLNT 453


>gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 476

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 180/335 (53%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+          
Sbjct: 19  AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    I+V TPG
Sbjct: 79  RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S  I
Sbjct: 139 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+    D   V++   N     +     LV    + + + +++R  G    +VF  T
Sbjct: 199 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +     VA+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V ++
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLV 353


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/333 (36%), Positives = 175/333 (52%), Gaps = 1/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E+GY   T +Q   +   L+ KD+L  AQTG+GKT AF L +   L AE+ + +P 
Sbjct: 15  KALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQRL-AEDRKPAPR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTRELA Q+    +      G+ V    GGV    + + L  G  ++V TP
Sbjct: 74  RGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALAGGIDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K   +S  +  VLDEAD+MLDLGF   I  I     K R+ L FSAT+   
Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTKNRQNLFFSATMPSE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    KD V+V++A +      ID R + +    +   +  +         IVF  
Sbjct: 194 IGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADSSFSRTIVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L     +  ++ G+ +Q +R  AL   + G  R  +ATD+AARGID+ D
Sbjct: 254 TKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVND 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ EL + PE  +HR GRT R G+ G+++
Sbjct: 314 VSHVINYELPNVPEAYVHRIGRTARKGKDGIAI 346


>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
 gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
          Length = 622

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 201/386 (52%), Gaps = 19/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I + L  R    L  VQ    +     KD +V A+TG+GKT+AF L L + L+  
Sbjct: 15  NIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVNQLIKR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + F P+  P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+NG 
Sbjct: 75  QESFKPS--PVVLVLAPTRELVTQIATDFESICVH-GIKVTSVYGGVPYKPQCNALRNGT 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKR 180
           H+VVG PGR+ D I    L +S ++ VVLDE D MLD+GF  D+E IL     + + KK 
Sbjct: 132 HVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILADIYNNETSKKP 191

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + L+FSAT+   ++ +++NY   DA+ +++    E +  +++ + A+L     R   + +
Sbjct: 192 QTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAATLSD 251

Query: 238 ILRYHGAKN---AIVFCSTRASVSRF--TKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +++ +        IVFC  +        + V+         L G++ Q +R   LQ  RD
Sbjct: 252 VIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCH---VLHGDVPQDKREFVLQKFRD 308

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+ R  + T+VAARG+D+P ++LVI      + E+ +HRSGRTGRA R G S+       
Sbjct: 309 GKYRTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSICFYTYKE 368

Query: 353 QRRAERLFREANVSVVWEPAPSVEAI 378
           +    ++   A ++     AP++  I
Sbjct: 369 RSMLSKIENMAGITFRRISAPTIHDI 394


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 180/340 (52%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  AL    Y   T +QE  +   L  +D+L  AQTG+GKT AF +     L  E
Sbjct: 7   NIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTLQMLSGE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA+Q+          T +   V  GGVS   +  +L+ G 
Sbjct: 67  ETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEENLKRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  K +NI  +K +VLDEAD MLD+GF  D++ I+  +P +++ L F
Sbjct: 127 DILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAEKQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA    K+  ++ I         I+     V   ++ + +++IL+     
Sbjct: 187 SATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDLLLHILKTKDLD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    R  + L++      A+ G+ SQ  R  AL   +D + RV +ATD+AA
Sbjct: 247 STLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  V++ +L   PE  +HR GRTGRAG +G+++
Sbjct: 307 RGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAI 346


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 186/339 (54%), Gaps = 5/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L     +++   R    
Sbjct: 33  KTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIIST--RALSK 90

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV  +L  L A T       +GG + + + + L+   H VV TP
Sbjct: 91  RDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSLERDPHFVVATP 150

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191
           GRL DH+    L+++ L+ ++LDEAD MLDLGF D ++ I  ++  KRR  LMFSAT+  
Sbjct: 151 GRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAADHKRRQTLMFSATLDH 210

Query: 192 -AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             I  +A    KD + V+I + N ++ DI  R  L    D   A++N IL+    K  I+
Sbjct: 211 NKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEALLNHILKNEKNKQVII 270

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR    R    LAE  F   +LSG+L Q  R+  +     G   + + TDVA+RG+D
Sbjct: 271 FTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQDILVTTDVASRGLD 330

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 331 LLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 369


>gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 504

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 203/382 (53%), Gaps = 13/382 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF + + + L        
Sbjct: 19  ILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPILNRLALTRKE-- 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P AL + PTRELA+QV    +  YA+      V    GG S+  + R L+ G H++
Sbjct: 77  ----PQALVLVPTRELAIQVAEAFQ-TYARYLEDFRVLPIYGGQSMGNQLRQLKRGVHVI 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R K L +  L  VVLDEADEML +GF +D+E+IL   P KR+  +FSAT
Sbjct: 132 VGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQTALFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  ++  +A  +      + I  +      I+ R  LV+   + +A+  +L        I
Sbjct: 192 MPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHKLDALTRMLEVEEYDATI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     K L+   +   AL+G+++Q +R   +  ++     + +ATDVAARG+
Sbjct: 252 IFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLDIIVATDVAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSV 367
           D+  +  V++ ++  +    +HR GRTGRAGR G  ++FV P+  +RR     ++     
Sbjct: 312 DVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKKVTGQP 369

Query: 368 VWE-PAPSVEAIRERDAQRILQ 388
           ++E P PS + I +R  ++  Q
Sbjct: 370 LYEMPLPSHQKIIDRRIEQFKQ 391


>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
 gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
          Length = 467

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ + 
Sbjct: 55  IIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L +APTRELA Q+ +  E L A  GV   V +GG+ +  +   L    H
Sbjct: 115 QPF------FGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPH 168

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P++RR  +F
Sbjct: 169 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+S  + +L +    + +RV++++   Q  S +    + +    +D  +V +L     
Sbjct: 229 SATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAG 288

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ I+F  T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVA
Sbjct: 289 QSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILVATDVA 348

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ +L  +  + +HR GRT RAG+ G+++  + Q
Sbjct: 349 ARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQ 394


>gi|262201425|ref|YP_003272633.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262084772|gb|ACY20740.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 491

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 195/381 (51%), Gaps = 6/381 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  +P  + + L+  G      +Q+  L   L  KDVL   +TGSGKT+AF + L
Sbjct: 1   MTTFESLGVPAELVKVLAAEGKTEAFPIQQDTLGDTLEGKDVLGRGKTGSGKTLAFSIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L AE +      AP  L +APTRELA Q+ R +E L    G+ V    GGV   R+ 
Sbjct: 61  VAGL-AEMEVPRKPGAPTGLVLAPTRELATQIARVVEPLAEAVGLRVTTVFGGVKQTRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  + G  IVV  PGRL D +R   + +  ++  V+DEAD M DLGF   +  IL ++P 
Sbjct: 120 QAFRRGVDIVVACPGRLDDLMRQGIVTLDDVEITVIDEADHMADLGFLPVVTRILAATPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  LA+ +  +    ++   N   + + +    V+ SD+   I  +
Sbjct: 180 DGQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVFEVSPSDKAALITEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               GA   I+F  T+    +  + L E     V L G LSQ +R   L     G  RV 
Sbjct: 240 --ASGAGRRILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGDVRVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+ELV+H +  +  +  LHRSGRT RAG  G  V V   + +R    
Sbjct: 298 VATDVAARGVHVDDIELVVHVDPPNEHKAYLHRSGRTARAGSAGDVVTVCLPDQRRDVAS 357

Query: 359 LFREANVSVVWEP-APSVEAI 378
           L R+A +SV   P  P  +A+
Sbjct: 358 LLRKAKISVAPMPVTPRSDAV 378


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ + +   G      +Q   +   L   D+L  AQTGSGKT AF L +   ++   
Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQKIIGLG 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  
Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FS
Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++
Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AAR
Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362
           GID+P +  V++ +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R 
Sbjct: 407 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466

Query: 363 ----ANVSVVWEPAP 373
                +  V   PAP
Sbjct: 467 KLSIKDAPVKLAPAP 481


>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 438

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 10/341 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R+       A+ + PT
Sbjct: 20  SKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQRY------FAVILTPT 73

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + E L A  GV   V +GG+ +  +   L    HI++ TPGRL DH+   K
Sbjct: 74  RELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHIIIATPGRLVDHLENTK 133

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G N+  +K +V+DEAD +L+L F  +++ IL   P++RR  +FSAT++  +  L +   K
Sbjct: 134 GFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFSATMTKKVKKLERASLK 193

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D V+V ++S+ +    +    V +    +D  +V+IL      + ++FCST  +  R   
Sbjct: 194 DPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNSFMIFCSTCNNTVRTAL 253

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L       V L G++SQ +R  +L   +    ++ I+TDVA+RG+D+P +++V++ ++ 
Sbjct: 254 MLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDVASRGLDIPHVDVVLNFDIP 313

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           ++ ++ +HR GRT RAGR G +V  + Q    + +R E L 
Sbjct: 314 THSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLL 354


>gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
 gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
          Length = 427

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 185/339 (54%), Gaps = 8/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRF 69
             ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + +   LL    E +RF
Sbjct: 57  HGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLKHPHEGERF 116

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128
                P AL IAPTREL +Q+  + E L   TG+     IGG+   ++   L +    +V
Sbjct: 117 --LGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQLGREVVDLV 174

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186
           V TPGRL D    + L +  ++ +VLDEAD MLD+GF   ++ I+  +P K  R+ L+FS
Sbjct: 175 VATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQTLLFS 234

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  L++ +  DA+ + I  ++     +D R  L +  +R   +VN+LR   A +
Sbjct: 235 ATFTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSDDASS 294

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF + R  V R  + L +       LSGE++Q +R+  L   + G   V +ATDVA R
Sbjct: 295 VIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVATDVAGR 354

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GI +  +  V++  L  +PE+ +HR GRTGRAG  G S+
Sbjct: 355 GIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSI 393


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 194/366 (53%), Gaps = 33/366 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+P+ +   L        T +Q+  +   +   D+L S+QTGSGKT+A+ L + +
Sbjct: 1   MKNF-NLPEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVIN 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             + +            L + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFIKDKT--------TTLILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-----------LS 229
           ++LMFSAT+   I +L++ Y  + VR+ + + N+  ++I   +V +            L 
Sbjct: 172 QVLMFSATMPKHIISLSQKYLNNPVRITVGATNKAAAEIKQESVHITDKEKFTELNKQLG 231

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           DR+ ++            I+F  T+ S  +  K+L     +  A+ G+LSQ++R   +  
Sbjct: 232 DREGSV------------IIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILS 279

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
            R    R+ +ATDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG KG ++ F+ 
Sbjct: 280 FRKSNHRIMVATDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFIS 339

Query: 349 PQNMQR 354
           P ++ R
Sbjct: 340 PDDVIR 345


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 184/337 (54%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L  +N      
Sbjct: 14  KAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILERL--DNGTRVKG 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHIVVGT 131
           +   AL + PTRELA QV +E  + Y++   + + V  GGV ++ +   L+ G  ++V T
Sbjct: 72  NHVRALVLTPTRELAAQV-QENVFKYSRYQRLTSNVVFGGVKINPQMTKLRKGTDVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   +N S L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S 
Sbjct: 131 PGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQNLLFSATFSA 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LAK    D V V++  EN     I+          +   +V +++    +  +VF 
Sbjct: 191 EIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWRQVLVFS 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R +  L +       + G  SQ  R+ AL   + G  RV +ATD+AARGID+P
Sbjct: 251 RTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVLVATDIAARGIDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 311 QLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 193/346 (55%), Gaps = 3/346 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E L  +G V+ T +Q   +   +  +DV+  A+TGSGKT AFGL +   LL E  
Sbjct: 6   PRLIAE-LKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 64

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    +A  AL +APTRELA Q+   LE     T +   + +GG  +  + R L+ G  +
Sbjct: 65  KPEGKTA-RALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGVDL 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +   K +VLDEAD+MLD+GF   +  I      +R+ ++FSA
Sbjct: 124 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  + K+ +RV + +  +    I+     VA + + + ++ ++  H  + A
Sbjct: 184 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+    +  K+LA   F   ++ G  SQ +R  A+   + G+  + +ATDVAARG
Sbjct: 244 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +D+P+++ V + +L +  EN +HR GRT RAG  GM++ F  P  M
Sbjct: 304 LDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEM 349


>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 480

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/371 (35%), Positives = 198/371 (53%), Gaps = 7/371 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L         A
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTYYAEHRGA 73

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEV 373

Query: 368 V--WEPAPSVE 376
           +  +EP PS +
Sbjct: 374 IAGFEPDPSAK 384


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 188/345 (54%), Gaps = 5/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + ++L   G    T +QE  +   L  KD++ S++TGSGKT+AF L     L++  
Sbjct: 18  LDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQRLISC- 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  + + PTRELA QV  +L  L A T       +GG + + + + L    H
Sbjct: 77  -KALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALARDPH 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMF 185
            VV TPGRL DH++   L+++ L+ ++LDEAD MLDLGF + ++ I +++  KRR  LMF
Sbjct: 136 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAADHKRRQTLMF 195

Query: 186 SATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHG 243
           SAT+    +  +A    K    V I + N +H DI  R  L    D   AI+  IL+   
Sbjct: 196 SATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R    LA   F+  +LSGEL Q  R+  +     G  ++ + TDV
Sbjct: 256 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 316 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 360


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 192/357 (53%), Gaps = 5/357 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 97  GFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNA 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               SP   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G 
Sbjct: 156 QPILSPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 215

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +
Sbjct: 216 EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYW 275

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA+N+  D  +V I SE+ +  H+ + +  +L + S + N +VN+L    
Sbjct: 276 SATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEIL-SESQKYNKLVNLLEDIM 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATD
Sbjct: 335 DGSRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           VAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+ L
Sbjct: 395 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKEL 451


>gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
          Length = 498

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +   L     +     
Sbjct: 15  AVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQRLSESPTQVKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++SH++ ++LDEAD MLD+GF  DI  IL+  P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D V V +A  N     I      V    +   +  ++     +  +VF  T
Sbjct: 195 KNLANKLLNDPVSVEVARRNSASEQIAQSIHFVDKKRKGELLSYMIGSQNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++  ++L +      A+ G  SQ  R+ AL   + G+ R  +ATD+AARG+D+  L
Sbjct: 255 KHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL +  E+ +HR GRTGRA   G ++ ++      + +  ERL +     +   
Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLLKDIERLLKREIPRIAIQ 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 224/396 (56%), Gaps = 17/396 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +   LL   
Sbjct: 17  IPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMIQHLLNVK 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++     A   + I PTRELA QV   L+ +  A  G++  + +GG+ V ++   L    
Sbjct: 76  EK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQSIQLAKRP 132

Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           H++VGTPGR+  HI+  KG+  +I  +K +V+DEAD++L++ F ++I+++++  P +R  
Sbjct: 133 HVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIEKLPSQRTT 192

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239
           ++FSAT+S  +  L +      V+  I  E +++  +D        +    RD  +++IL
Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLLSIL 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K+ I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G+  + +
Sbjct: 251 KETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356
           ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q    + +R 
Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSIELYQRI 370

Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           E +  ++ N   V E      + +  DA RI+   L
Sbjct: 371 ETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406


>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 434

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 176/333 (52%), Gaps = 1/333 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            ++E G+   T +QE  +   L+  DVL  AQTG+GKT AFGL L   L+    +R   +
Sbjct: 31  TVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESPIERHEES 90

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTRELA QV   L      T + V V  GG S++ ++ +L  GA I++ TP
Sbjct: 91  KVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGADILIATP 150

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + ++  + +VLDEAD MLD+GF  DI+ IL   P +R+ L FSAT S  
Sbjct: 151 GRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFFSATFSKK 210

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +A         V +   N     ++     V    +   +  ++     +  +VF  
Sbjct: 211 VREIAYYMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKSELLAYLIGSRNWQQVLVFTK 270

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L +   +  +++G+ SQ  R  AL+  + G+ R  IATDVAARG+D+  
Sbjct: 271 TKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAARGLDIEQ 330

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LE VI+ EL    E+ +HR GRTGRAG  G ++
Sbjct: 331 LECVINYELPFKAEDYVHRIGRTGRAGHTGKAI 363


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 193/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  ++     I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPA 407


>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
          Length = 548

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 197/373 (52%), Gaps = 11/373 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--ENDRFSP 71
           A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L   L A   N   +P
Sbjct: 15  AVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLHRLSAVQPNKVQTP 74

Query: 72  ASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IV
Sbjct: 75  NGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIV 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FSAT
Sbjct: 135 VATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILNILPPKRQNLLFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA         + +A  N     ++ R   V    +   +  ++  +     +
Sbjct: 195 FSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKRELLAKLVSDNDWHQVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G  RV +ATD+AARGI
Sbjct: 255 VFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGTLRVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REAN 364
           D+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++      + R  ERL  RE  
Sbjct: 315 DIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHGLLRDIERLIKRELP 374

Query: 365 VSVV--WEPAPSV 375
            +V+  +EP P++
Sbjct: 375 RTVLSGFEPDPTI 387


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 186/340 (54%), Gaps = 7/340 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---P 75
           GY   T +Q+  +   L  +D++  AQTGSGKT AF L + + ++ E    SP S    P
Sbjct: 76  GYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPVLTAMVKEGLTCSPMSEFQEP 135

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             + +APTRELA Q+  E      +T V   V  GGVSV  + R +++GA++VVGTPGRL
Sbjct: 136 QTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVAHQLRQVESGANLVVGTPGRL 195

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191
            D I    +++  +K ++LDEAD MLD+GF   I  +++S    S  +R+ LMFSAT   
Sbjct: 196 LDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVESLGMPSKSERQTLMFSATFKA 255

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA ++  D + + +       SD++   + V    +   + +IL   G    +VF 
Sbjct: 256 EIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQKREYLCDILNSSGTNRVLVFV 315

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + +       L++  +   ++ G+  Q+ER  AL   + G++ V IAT+VAARG+D+P
Sbjct: 316 GQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFKRGKSPVLIATNVAARGLDIP 375

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  V++ +L ++ +  +HR GRTGR G  G +     Q+
Sbjct: 376 DVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQD 415


>gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia
           guttata]
          Length = 451

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 191/346 (55%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ +A  + G+   T +Q   +   L+ +DV+  A+TGSGKT AF L +   LL   
Sbjct: 31  VTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQALLETP 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
            R        AL + PTRELA Q+  + E L +  GV   AV +GG+    +   L    
Sbjct: 91  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSLALAKKP 144

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           H+++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +
Sbjct: 145 HVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL     
Sbjct: 205 FSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAG 264

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA
Sbjct: 265 NSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVA 324

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q
Sbjct: 325 SRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQ 370


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     +  PA
Sbjct: 23  KAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL----SKGQPA 78

Query: 73  SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  I++ 
Sbjct: 79  KANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIA 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + PKKR+ LMFSAT S
Sbjct: 139 TPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQNLMFSATFS 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     +      V  + + + +V ++  H  +  +VF
Sbjct: 199 EDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+
Sbjct: 259 SRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L    ++ +HR GRTGRAG  G ++ ++
Sbjct: 319 EQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 356


>gi|117164725|emb|CAJ88273.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 472

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 202/372 (54%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +A++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL   L   
Sbjct: 46  GLPPALLKAMTGLGVTRPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLAL---LART 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
             R + A  PLAL +  TRELA QV   L   YA+T  + +A  +GG+S++R+   L+NG
Sbjct: 103 AGRRADAKRPLALVLVSTRELAQQVSEALAP-YARTMDLRLATVVGGLSINRQAEQLRNG 161

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +  ILD  P   + L+
Sbjct: 162 AEVVVATPGRLADLVSRRDCHLDRVRITVLDEADQMCDMGFLPQVTGILDQVPGDGQRLL 221

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L +++  D V  ++   +   + +++  + V  +D+      I    G 
Sbjct: 222 FSATLDGDVDQLVRSHLHDPVLASVDPVSGSVATMEHHVLTVHPADKHAVATEIAARDG- 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+A V RF + L     +  AL    SQ +R++ L    DG   V +AT+VA
Sbjct: 281 -RVLMFLDTKAGVDRFLRHLRAGGVRAAALHSGKSQPQRTHTLAQFVDGGVTVLVATNVA 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  ++ ++ LHR GRT RAG+ G  V ++  + +R   R+  EA 
Sbjct: 340 ARGIHVDALDLVVNVDPPADAKDYLHRGGRTARAGQSGRVVTLVTPDQRRDVNRMMSEAG 399

Query: 365 VSVVWEPAPSVE 376
           +     P  S E
Sbjct: 400 IRPTITPVRSGE 411


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 193/345 (55%), Gaps = 7/345 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E  P+++ EAL+  GY + T +Q   + P L  +D+L+SAQTGSGKT AF L +   ++
Sbjct: 45  LELAPELL-EALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKII 103

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQ 122
            +    +       + + PTRELA QV   +    +KT  + +V  +GG     + R L 
Sbjct: 104 RDK---ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALN 160

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +++ TPGR  DH+    +++S L  ++LDEAD MLD+GF +DIE ++ ++PK R+ 
Sbjct: 161 KGVQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQT 220

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT    +  +A ++  +  R++I +E +   +  Y A     + ++  + N+L   
Sbjct: 221 IMCSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYA--DDFNHKNRILDNLLTQK 278

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+ S     K L E   +   L G+L Q +RS  +  ++ G+  + +ATD
Sbjct: 279 DVNQAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVATD 338

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           VAARGID+  +  V + +L    E+ +HR GR+GRAGR G+++ +
Sbjct: 339 VAARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINI 383


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/364 (34%), Positives = 197/364 (54%), Gaps = 13/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +   +S+ GYV LT VQ+  +   L ++D++  AQTGSGKT AF L + + ++  
Sbjct: 36  NLPETLNRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMM-- 93

Query: 66  NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D  +P S     P A+ +APTREL  Q+  +       T +   V  GG       R +
Sbjct: 94  RDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQI 153

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177
             G +I+  TPGRL D I+ + + ++ L+ +VLDEAD MLD+GF  D++ +++S    S 
Sbjct: 154 YQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGMPSK 213

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + R+ LMFSAT    I +LAK + K D + V +       SD++   + V    + + +V
Sbjct: 214 EDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLV 273

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G+  
Sbjct: 274 EILQGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCN 333

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR 354
           V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G   K ++ F    N  R
Sbjct: 334 VLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDNEDR 393

Query: 355 RAER 358
              R
Sbjct: 394 TVAR 397


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 180/335 (53%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   +L +N R     
Sbjct: 15  ATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ-MLEQNPRT--GK 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +           AV  GGV ++ +   L+ G  ++V TPG
Sbjct: 72  GPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRKGLDVLVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S  I
Sbjct: 132 RLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSLLFSATFSNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLAK    D V++++A  N     +      V  S +   +  ++R +  +  +VF  T
Sbjct: 192 RTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDNSWEQVLVFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 252 KHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVATDIAARGLDIKQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 312 PQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLV 346


>gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 421

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 178/342 (52%), Gaps = 8/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72
           L+E  Y   T +Q   +   L  KDV+  AQTG+GKT AF L L   LL   D  +    
Sbjct: 16  LAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLLHQLLTHQDNLAAQPD 75

Query: 73  -----SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                S P+ AL + PTRELA QV   +E     + V   +  GGVS+  + R L NG H
Sbjct: 76  TQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGGVSIGEQIRQLANGTH 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +R + L++S L  +V DEAD MLD+GF+D+I  +L   P  R+ L+FS
Sbjct: 136 ILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLKRLPSTRQTLLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + + ++   +    + +A  N   S I  R   V  + +   + +++       
Sbjct: 196 ATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVFNVDANRKCAMLCHLITQESWLQ 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++F  T+       K + +      A   +LSQ  R   L   + G     +ATDVAAR
Sbjct: 256 SLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVLAAFKAGEVTALVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ EL    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 316 GLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITLL 357


>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 484

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 189/338 (55%), Gaps = 7/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A +  G+   + +Q   +   L  KD++  AQTGSGKT AF L +  TL      F    
Sbjct: 52  ACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPF---- 107

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+ +++  L +  GV  AV +GG+ +  +   L    HI+V TPG
Sbjct: 108 --FALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRPHIIVATPG 165

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH+   KG ++  LK +V+DEAD +LDL F   I+ IL   PK+R   +FSAT++  
Sbjct: 166 RLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTYLFSATMTTK 225

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +      VRV ++S+    S +    +L+ L ++D  ++ +     + + ++F  
Sbjct: 226 VAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANELSSSSMMIFTR 285

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T A   R + +L    F  + L G+++Q  R  +L   + G   + +ATDVA+RG+D+P 
Sbjct: 286 TVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVATDVASRGLDIPL 345

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 346 VDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQ 383


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 187/338 (55%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   +  KDV+ +AQTG+GKT  F L +   L+    + +
Sbjct: 12  ILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILELLIP--GKLA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+    L + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  ++V 
Sbjct: 70  QANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKLRQGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +   HL+ +VLDEAD MLD+GF  DI+ IL   PKKR+ L+FSAT S
Sbjct: 130 TPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     + +    V  + +   ++++++ +     +VF
Sbjct: 190 NDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K L        A+ G  SQ  R+ AL   + G+ +V +ATD+AARG+D+
Sbjct: 250 SRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++
Sbjct: 310 EQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLV 347


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E G     ++QE  L   L   D++  A+TG GKT AFG+ L   +  + ++  
Sbjct: 21  ICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK-E 79

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +  P AL + PTREL +QV  +L    ++L A    +  V I GG     +   L+ GA
Sbjct: 80  LSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  +P  R+ ++F
Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLF 199

Query: 186 SATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I TLA+ +  Q   +R      +  H      A      D+   +  IL+  G
Sbjct: 200 SATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQAEG 259

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +ATDV
Sbjct: 260 RGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDV 319

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 320 AARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 364


>gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 427

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 195/347 (56%), Gaps = 9/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61
           N+ + + +A++  G+   T +Q   L   L  +D++  AQTG+GKT AF +    +L  T
Sbjct: 17  NLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + E +RF  AS P  LA+APTRELA+Q+ ++ E L   TG  V   +GG++  ++R  L
Sbjct: 77  PIPEKERF--ASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQRDQL 134

Query: 122 QNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179
           QN    I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+   +PK+
Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKE 194

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT +  +  LA  +  +A  V I  E +    ++    LV   ++   +VN 
Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDEKLPVLVNF 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + A+VF + R       + L     +V  +SGE++Q +R   L   + G  +V 
Sbjct: 255 LKRPEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKKGSIQVL 314

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+S+
Sbjct: 315 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSI 361


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 185/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +  A   +  N R     +P AL
Sbjct: 42  GFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIG-ALQCIDVNVR-----SPQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ +    L     V V  C+GG ++  + + L+ G HIV GTPGR+ D 
Sbjct: 96  ILSPTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKKLETGVHIVSGTPGRVLDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L+  H+K ++LDEADEML LGF+  I  +    P+  ++++ SAT++  + T+ +
Sbjct: 156 ITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEATQIVLVSATLTQDVVTMTE 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + +I        A++FC+T+  V
Sbjct: 216 KFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKKKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LVI
Sbjct: 276 DQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  + EN LHR GR+GR GRKG+++
Sbjct: 336 NYDLPIDRENYLHRIGRSGRFGRKGVAI 363


>gi|325675810|ref|ZP_08155494.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707]
 gi|325553781|gb|EGD23459.1| ATP-dependent RNA helicase RhlE [Rhodococcus equi ATCC 33707]
          Length = 500

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/396 (34%), Positives = 202/396 (51%), Gaps = 21/396 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I  AL++ G      +Q   L   L  +DVL   +TGSGKT+AF + LA+ 
Sbjct: 27  FESLGVPAPIVSALADGGITAPFPIQVDTLPDTLAGRDVLGRGKTGSGKTLAFSIPLAAR 86

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R      P  L +APTRELA Q+   LE L    G+ V    GGVS HR+ + L
Sbjct: 87  LAGGKRR---PGKPRGLVLAPTRELATQITATLEPLAGALGLRVTTIFGGVSQHRQVKAL 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  IVV  PGRL D ++ + + +  ++  +LDEAD M DLGF   +  IL ++P   +
Sbjct: 144 ESGVDIVVACPGRLEDLMKQRFVTLDAVEMTILDEADHMADLGFLPGVTRILTATPSGGQ 203

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   +  L K + ++ V  ++   N   + + +    VA  +   A+V+ L  
Sbjct: 204 RLLFSATLDNGVDKLVKRFLQNEVLHSVDEANSPVAAMTHHVYDVAGVEAKKALVHKL-A 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    I+F  T+    +  + L E     V L G LSQ  R   L    +G ARV +AT
Sbjct: 263 SGQGRRILFMRTKHQARKLARQLTESGIPSVDLHGNLSQNARDRNLAAFSEGTARVLVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ + ++ELV+H +  +  +  LHRSGRT RAG  G  V ++    ++    L R
Sbjct: 323 DVAARGVHVDEVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTIVLPEQRKDLSALMR 382

Query: 362 EAN---------------VSVVWEPAPSVEAIRERD 382
           +A+               V++V EPAP V    + D
Sbjct: 383 KASIKVTPVQVTADSEHVVTLVGEPAPHVAPAPKTD 418


>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Acyrthosiphon pisum]
          Length = 450

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 200/358 (55%), Gaps = 10/358 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E      +   T +Q+  +   L+ KD++  A+TGSGKT AF + +   LL   
Sbjct: 26  VTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQALLENP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+  ++E L +  GV  AV +GG+ +  +   L    H
Sbjct: 86  QRY------FALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLMLAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG ++ +LK +V+DEAD +L++ F ++++ IL   P++RR  +F
Sbjct: 140 IIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRERRTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +    D VRV ++++ +    +    + + +  +D  +V+IL      
Sbjct: 200 SATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILNEMAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF +T     R   +L       + L G+++Q +R  +L   +     + I+TDV++
Sbjct: 260 SFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILISTDVSS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q    + +R E+L 
Sbjct: 320 RGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEQLI 377


>gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056]
 gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058]
 gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059]
          Length = 347

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 190/340 (55%), Gaps = 9/340 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLALA 59
           ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF       LA  
Sbjct: 9   SLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTLHNLAGQ 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            T +   +R    + P  L + PTRELA QV ++ + ++    GV +A  +GG+   ++ 
Sbjct: 69  DTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGMPFGKQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I D +  
Sbjct: 129 QQLK-GAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAISDLAAN 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVN 237
           + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            +   + +
Sbjct: 188 RGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKKKLLTH 247

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+GRA++
Sbjct: 248 WLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIREGRAKI 307

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGR
Sbjct: 308 LVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+  G  + + +    
Sbjct: 610 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 667

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            + +P   P  L +APTRELA Q+  E    + ++  V   C+ GG S   + R+L+ GA
Sbjct: 668 YQNNPMLGPTVLVLAPTRELASQIQDEAV-KFGRSSRVSCTCLYGGTSKGLQLRELERGA 726

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R+ LM+
Sbjct: 727 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 786

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +AT    +T +A +  KD V+VNI S +      S   Y  V+  L D+   +  ILR  
Sbjct: 787 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 845

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G+K  I+FCST+    +  + +    F   ++ G+ SQ ER N L   R GRA + +A
Sbjct: 846 ERGSK-VIIFCSTKKMCDQLARDIGR-SFGAASIHGDKSQAERDNVLNQFRTGRAPILVA 903

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S
Sbjct: 904 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 947


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 195/358 (54%), Gaps = 11/358 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +   +S+ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + L+  
Sbjct: 300 NLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPILAHLM-- 357

Query: 66  NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D   P ++    P  + +APTREL  Q+  +      +T +   V  GG       R +
Sbjct: 358 QDGIPPPTSELQEPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGTQTIHSLRQI 417

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177
             G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GF  D++ ++ S    + 
Sbjct: 418 YQGCNILCATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPGMPTK 477

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           ++R+ LMFSAT    I +LA+ + K D + V +       +D+  + + V   ++ + +V
Sbjct: 478 EERQTLMFSATFPENIQSLAREFLKPDYLFVTVGQVGGACADVQQKILEVDQYEKKDKLV 537

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G+  
Sbjct: 538 EILQGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFGKCH 597

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           V +AT+VAARG+D+ +++ VI+ +LS N E  +HR GRTGR G  G ++     N  R
Sbjct: 598 VLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISFFHSNQNR 655


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 196/365 (53%), Gaps = 11/365 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       +  R
Sbjct: 15  AVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPGGHPDKEHR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P  A + L + PTRELA QV    + LYA+   +V+ CI GGV ++ + + L  G  +
Sbjct: 75  HGPRQARV-LVLTPTRELAAQVHDSFK-LYARDLKLVSACIFGGVGMNPQVQALSRGVDV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL D +    +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSA
Sbjct: 133 LVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  L      D  R+ +   N     I+ R   +    +   + +++     +  
Sbjct: 193 TFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHLVTQGAWEQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   + G  R+ +ATD+AARG
Sbjct: 253 LVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRILVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREAN 364
           +D+  L  V++ EL +  E+ +HR GRTGRAGR G ++  V P  + + +  ER+ R++ 
Sbjct: 313 LDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTRQSI 372

Query: 365 VSVVW 369
               W
Sbjct: 373 PEGDW 377


>gi|302409340|ref|XP_003002504.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
 gi|261358537|gb|EEY20965.1| ATP-dependent RNA helicase DBP3 [Verticillium albo-atrum VaMs.102]
          Length = 571

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 185/344 (53%), Gaps = 22/344 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
            Y   T +Q A     L  +D +  A+TGSGKT+AF L L  ++     R   A     +
Sbjct: 195 AYTKPTPIQAASWPFTLSGRDAIGVAETGSGKTMAFALPLVESISKMKKRCIKA-----V 249

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q   +   L A  G+      GG S   +R  LQ GA I+V TPGRL D 
Sbjct: 250 VVSPTRELAMQTHEQTAQLAAHLGLKSVCVYGGASKDEQRALLQRGADIIVATPGRLKDF 309

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196
           +    +++SH +  VLDEAD MLD GF DDI+ IL + P +  R+ LMF+AT   ++  L
Sbjct: 310 MSDGTVDLSHSRFAVLDEADRMLDKGFEDDIKAILGAMPAREDRQTLMFTATWPASVRLL 369

Query: 197 AKNYQKDAVRVNIAS----------ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           A ++  D V++ I S          E + ++ I  R  +V   D++  ++ ILR + A  
Sbjct: 370 ASSFMVDPVKITIGSGGKETASGSVELQANTRITQRVEVVDGRDKEQRLLQILRQYQAGQ 429

Query: 247 A-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VFC  +   +R    L +    V  + G+L Q +R+ +L+  + G   V +AT
Sbjct: 430 GRHDRILVFCLYKKEATRVEGFLQQRGIHVCGIHGDLRQDQRTRSLEAFKSGSTSVMVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+D+P+++LV++       E+ +HR GRTGRAG+ G ++
Sbjct: 490 DVAARGLDIPEVKLVVNVTFPLTIEDYVHRIGRTGRAGKTGEAI 533


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 192/353 (54%), Gaps = 10/353 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   + + G+   T +Q       L+ K+++  + TGSGKT+AF L  A   +  
Sbjct: 75  SMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAF-LLPAMIHINA 133

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELAVQ+  E +   A + +   V  GGV   ++ R L+ G 
Sbjct: 134 QQYLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRSLREGV 193

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL DH+     N+  +  +VLDEAD MLD+GF   +  I+      R++LM+
Sbjct: 194 EIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMW 253

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---- 241
           SAT    +  LA++Y  D  +V + S +    + D   ++   SD+D    N+LRY    
Sbjct: 254 SATWPKEVQNLARDYLSDFYQVTVGSLDLA-GNKDVTQMIDVCSDQDK-YRNLLRYLREN 311

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+      T+ L    FQ  A+ G+ SQ+ER   L+  +  +A + +A
Sbjct: 312 LTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATLLVA 371

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--FVIPQN 351
           TDVAARG+D+ D+++V++ +  ++ E  +HR GRTGRAG+KG +V  FV  +N
Sbjct: 372 TDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKN 424


>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
 gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 479

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 196/341 (57%), Gaps = 11/341 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++S  G+ + T++Q  +L   L+ +D++  A+TGSGKT AFGL +   LL    RF    
Sbjct: 65  SVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRF---- 120

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL +Q+ +++  +    GV V   +GG+  + +   L    H+VVG+PG
Sbjct: 121 --YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 178

Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190
           R+ DH++  KG ++  +K +VLDEAD +L L F   ++ +L+   SP +R+ ++FSAT++
Sbjct: 179 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 238

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             ++ L K   K  V++ + S+    S +    +LV    +   +   L +    + IVF
Sbjct: 239 TKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 298

Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            +T A+ +R T +   HL FQ V L G+++Q +R  AL   R       +AT+V +RG+D
Sbjct: 299 TNTCAN-ARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 357

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q
Sbjct: 358 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 398


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 203/365 (55%), Gaps = 11/365 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   + P L  +DV+  AQTG+GKT AF L +   L A      P  A   L ++PT
Sbjct: 34  TPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHRL-APGKPAGPKKA-RVLILSPT 91

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL+ Q+ + ++ L  K  +  AV +GGVS+  + + L +G  +++ TPGRL D I  + 
Sbjct: 92  RELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLASGVDVLIATPGRLMDLIEQRA 151

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           ++++ ++ VVLDEAD+MLD+GF   I+ IL  +P  R+ L+FSAT+   I  L+  +  D
Sbjct: 152 VSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQTLLFSATMPKEIRQLSDRHLTD 211

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            + V++    +    +++  + +    +  A+ +++R    +  IVF  T+    +  K 
Sbjct: 212 PIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDRKGERVIVFTRTKRGADKAAKR 271

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L        A+ G  SQ +R  AL   R G   V IATD+AARGID+P + LV++ EL +
Sbjct: 272 LEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATDIAARGIDVPGVSLVVNYELPN 331

Query: 324 NPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFREANVSVVWEPAPS---VEA 377
            PE  +HR GRT RAG +G +V F  P  +++ R  E++ +   V++  E AP    V+A
Sbjct: 332 VPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEKMLK---VAIPVENAPEGTYVDA 388

Query: 378 IRERD 382
           + + D
Sbjct: 389 LADPD 393


>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 466

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 191/367 (52%), Gaps = 15/367 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ ++GY   + +Q   +   +  +DV+ +AQTG+GKT  F L L   L +       +
Sbjct: 19  KAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSS 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA Q+   +E       +   V  GGV ++ +   L+ G  ++V TP
Sbjct: 79  NNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + +  S L+  +LDEAD MLD+GF  DI+ ++ + PK R+ L+FSAT SP 
Sbjct: 139 GRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPE 198

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    + + +++ +EN     +      V    +   + ++++ +  +  +VF  
Sbjct: 199 IRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLVFTK 258

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++ TK L        A+ G  SQ  R+ AL   +DG  ++ +ATD+AARGID+  
Sbjct: 259 TKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDL 318

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAE 357
           L  V++ +L + PE+ +HR GRT RAG  G ++                VI Q+++R+  
Sbjct: 319 LPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQHIERKVI 378

Query: 358 RLFREAN 364
             F  AN
Sbjct: 379 EKFIPAN 385


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 193/349 (55%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +S+ GY  LT VQ+  +   L ++D++  AQTGSGKT AF L + + ++  
Sbjct: 281 NLPETLNKNISKAGYAKLTPVQKHSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMM-- 338

Query: 66  NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D  +P S     P A+ +APTREL  Q+  +       T +   V  GG       R +
Sbjct: 339 QDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQI 398

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177
             G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GF  D++ ++ S    S 
Sbjct: 399 YQGCNILCATPGRLLDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPGMPSK 458

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           ++R+ LMFSAT    I +LAK + K D + V +       SD++   + V    + + +V
Sbjct: 459 EERQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLV 518

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G+  
Sbjct: 519 EILQGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFGKCN 578

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G  G ++
Sbjct: 579 VLVATNVAARGLDIENVQHVIIFDLSDNIEEYVHRIGRTGRCGNVGKAI 627


>gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 481

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 11/380 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+          
Sbjct: 3   AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    I+V TPG
Sbjct: 63  RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S  I
Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+    D   V++   N     +     LV    + + + +++R  G    +VF  T
Sbjct: 183 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 242

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 243 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 302

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367
             V++ EL + PE+ +HR GRTGRAG  G +V ++  +   + +  ERL +   E     
Sbjct: 303 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVD 362

Query: 368 VWEP---APSVE--AIRERD 382
            W P    P+ E  A RER+
Sbjct: 363 GWTPPAGGPTAEDRADRERE 382


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 193/351 (54%), Gaps = 15/351 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60
           ++ Q + + L   G    T +QE  +   L  KD++ S++TGSGKT+AF L      ++ 
Sbjct: 7   SLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQRMISC 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L++ D       P A+ + PTRELA QV  +L  L A T       +GG + + + + 
Sbjct: 67  KALSKRD-------PRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H VV TPGRL DH++   L+++ L+ ++ DEAD MLDLGF + ++ I +++  KR
Sbjct: 120 LARDPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAADHKR 179

Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
           R  LMFSAT+    +  +A    K    V I + N +H DI  R  L    D   A+++ 
Sbjct: 180 RQTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEALLSR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    K  I+F +TR    R  K LA+  F+  +LSGEL Q  R+  +     G  ++
Sbjct: 240 ILKDEQQKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG +V ++
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 350


>gi|2231116|emb|CAA65745.1| heat resistant RNA dependent ATPase [Thermus thermophilus]
          Length = 510

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 179/332 (53%), Gaps = 12/332 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++ EAL  RG    T +Q A L   L  KD++  A+TG+GKT+AF L +A 
Sbjct: 3   FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R      P AL + PTRELA+QV  EL  +     VV     GG    +++  
Sbjct: 62  RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA  VV TPGR  D++R   L++S ++  VLDEADEML +GF +++E +L ++P  R
Sbjct: 117 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+      LA+ Y K+ V +N+  +  +    +  AV   +  R   + ++L 
Sbjct: 177 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 A+VF  T+A      + L    HL Q  AL G+LSQ ER   L   R G  RV 
Sbjct: 235 VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQ--ALHGDLSQGERERVLGAFRQGEVRVL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           +ATDVAARG+D+P ++LV+H  L    E   H
Sbjct: 293 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 324


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 187/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 133 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 186

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 187 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 246

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   + T+  
Sbjct: 247 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPHDVLTMTT 306

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 307 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 366

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 367 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 426

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 427 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 463


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 203/381 (53%), Gaps = 12/381 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +Q+  +   +  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG-AKNAIVF 250
             + + +  + V++ ++        +    V        +   +  +LR     +NAI+F
Sbjct: 192 RRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLREASDLQNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R+ AL+  R G   + +A+DVAARG+D+
Sbjct: 252 CNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367
           P++  V + ++  +P++ +HR GRTGRAGR G +V  V P + +  A  E+L  +    V
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAIEKLIGQEIPRV 371

Query: 368 VWEPAPS---VEAIRERDAQR 385
               AP    VE  RE  A+R
Sbjct: 372 QLGDAPPETEVEGEREAPARR 392


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +++ + GY N + VQE ++    + KD++V +QTGSGKT AF + +   +  E     
Sbjct: 30  ILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPICEKIELEEKN-- 87

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +APTRELA+Q+  +   +     +      G   +  + ++L+   H++VG
Sbjct: 88  ----PQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELKQRTHVIVG 143

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  DHI    L++  ++ +++DEADEML++GF D ++ +LD  PK R  L+FSATI 
Sbjct: 144 TPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVTLLFSATIP 203

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L   Y  + + V I +E+   + I+     +    + + +  ++     +++++F
Sbjct: 204 QEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLVYTQRPESSMIF 263

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +V      +    +    L G + Q ER + ++  + G     + TDVAARGID+
Sbjct: 264 CRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVCTDVAARGIDV 323

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            ++  +I+ ++    E+ +HR GRTGRAG+ G ++ FV P+   R  E + +  N+++  
Sbjct: 324 ENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEY-RFLEEIEKFFNLTIEK 382

Query: 370 EPAPSVEAIRE 380
              PS E + +
Sbjct: 383 GTIPSKEEVEK 393


>gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
 gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
          Length = 383

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 201/357 (56%), Gaps = 12/357 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE +   PQ + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ +
Sbjct: 5   FETLKLHPQ-LKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIN 63

Query: 61  TLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            LL    +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++
Sbjct: 64  DLLNNPIQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQ 121

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++ L +N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  S
Sbjct: 122 KKMLDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYS 181

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P K  R+ LMFSAT S  +  LA+ +  + V V I  E + + D++ R  +VA  D+   
Sbjct: 182 PSKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKEDKYKL 241

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +ILR       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+
Sbjct: 242 LQDILRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             + IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++
Sbjct: 302 HNIMIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSED 358


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLA 77
           Y   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L      + A  P A
Sbjct: 310 YKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLPPMSEENEAEGPYA 369

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +V+ TPGRL D
Sbjct: 370 VVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLID 429

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----------------R 180
            +  +   ++    VVLDEAD M+D+GF   +  +LD+ P                   R
Sbjct: 430 CLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYR 489

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++   S++ + +  +L 
Sbjct: 490 TTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTKESEKSSRLHRLLD 549

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G K AIVF +T+ +     K L +H ++V  L G  SQ++R  +L+  R  R  V +A
Sbjct: 550 ELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA 609

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++
Sbjct: 610 TDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA 653


>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 413

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/333 (34%), Positives = 178/333 (53%), Gaps = 2/333 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           LSE  Y   T VQ   +   L   D++  AQTG+GKT AF L +   L   ++ + S   
Sbjct: 16  LSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPILERLSQLKSSQTSYEL 75

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA+QV +          +  A+  GGVS+  +   L+ G  I++ TP
Sbjct: 76  TPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQADILKAGVDILIATP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L ++ L  +V DEAD MLD+GF+D+I+ IL   PK+R+ L+FSAT    
Sbjct: 136 GRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLPKERQTLLFSATFDDG 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L+K   KD   + +   N     ++ R   V    +   + +++     +  ++F  
Sbjct: 196 VFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDADRKSELLCHLILSKKWRQVLIFSR 255

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +    +    L     + +A  G+LSQ  R   LQ  + G  +V +ATDVAARG+D+  
Sbjct: 256 KKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVAARGLDVES 315

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LE+V++ EL    E+ +HR GRTGRAG  G+++
Sbjct: 316 LEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAI 348


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 192/346 (55%), Gaps = 10/346 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GYV+ T +Q+  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPTEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGA---KNAI 248
             + + +  +  ++ ++        +    V       ++   + +++R  GA   KNAI
Sbjct: 192 RRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHLIR--GATDLKNAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   + L  H F V AL G++ Q  R  AL+  R G   + +A+DVAARG+
Sbjct: 250 IFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPILVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+
Sbjct: 310 DIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQK 355


>gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 713

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 206/375 (54%), Gaps = 21/375 (5%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P   G  + L  RG   L  VQ    NP    KDV+  A+TG+GKT +F + L   
Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A++       +P  L +APTRELA QV ++ + +  K  + VA   GG   + +   +
Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 252

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 253 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 312

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++     Q   + +++ A+    S R  
Sbjct: 313 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAA 372

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            I ++++ Y G+    IVFC T+   +     L   + Q   +L G++ Q++R   L+  
Sbjct: 373 VIGDVIQVYSGSYGRTIVFCETKKDANEL--ALNASIKQDCQSLHGDIPQKQREITLKGF 430

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G  +V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +     
Sbjct: 431 RNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICF--- 487

Query: 351 NMQRRAERLFREANV 365
             QR+ E   R   V
Sbjct: 488 -YQRKEENQLRYVEV 501


>gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40]
 gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 392

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 193/346 (55%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+  ++  ALS+  +   +++Q   L   LR  DVL  AQTG+GKT AF +AL   LL  
Sbjct: 12  NLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALIEDLLGT 71

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E +R+  A    +L IAPTRELA+Q+ ++ E L   T + V + +GGV   ++ + LQ
Sbjct: 72  PIEEERY--AGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQLQKLQ 129

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
                I+V TPGRL D    + + +  ++ +V+DEAD MLD+GF   ++ I+  +P    
Sbjct: 130 AEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMTPPSTH 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  +  L++ +  + V V+I  EN     +     LV+  ++   + N++
Sbjct: 190 RQTLLFSATFSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQVVYLVSSEEKFTVLGNLM 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    +N ++F + R         L    F+V  LSGE++Q +R   L+  R G+    +
Sbjct: 250 REPDVENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFRTGKLTALV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L   PE+ +HR GRTGRAG++G+SV
Sbjct: 310 ATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSV 355


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 197/374 (52%), Gaps = 15/374 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           IF+ +   + +A  +  +   + VQE  + P L   DV+VSA+TGSGKT AF L +   L
Sbjct: 6   IFQELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHNL 65

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L    R +       L +APTRELA Q+ +    L   T +   + IGG     ++   +
Sbjct: 66  LENPSRHTSTRV---LILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIFR 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   I++ TPGR+ +H   +G +++ L+ +V+DEAD+M ++GF DD++ I       R+ 
Sbjct: 123 DNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR 240
           L+FSAT+         +Y  D  +  + +     +D   + ++ A  L  ++     +L 
Sbjct: 183 LLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWLLT 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVFC+T+  V R   ++  H      L G++SQ  R++ +   RD + +V IA
Sbjct: 243 NEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLIA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+ D++LVI+ +++ N E+ +HR GRT RAG  G +V +I            
Sbjct: 303 SDVAARGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISH---------- 352

Query: 361 REANVSVVWEPAPS 374
           RE N+ V  E A S
Sbjct: 353 REWNLMVTIEKAIS 366


>gi|55980078|ref|YP_143375.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
 gi|55771491|dbj|BAD69932.1| ATP-dependent RNA helicase [Thermus thermophilus HB8]
          Length = 517

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 179/332 (53%), Gaps = 12/332 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++ EAL  RG    T +Q A L   L  KD++  A+TG+GKT+AF L +A 
Sbjct: 10  FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R      P AL + PTRELA+QV  EL  +     VV     GG    +++  
Sbjct: 69  RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA  VV TPGR  D++R   L++S ++  VLDEADEML +GF +++E +L ++P  R
Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+      LA+ Y K+ V +N+  +  +    +  AV   +  R   + ++L 
Sbjct: 184 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 A+VF  T+A      + L    HL Q  AL G+LSQ ER   L   R G  RV 
Sbjct: 242 VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQ--ALHGDLSQGERERVLGAFRQGEVRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           +ATDVAARG+D+P ++LV+H  L    E   H
Sbjct: 300 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 331


>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 451

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 199/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+ +N+  +   
Sbjct: 15  AVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLI-QNEPHAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+    + + V +A  N     I      V  + +   +  ++     +  +VF  
Sbjct: 194 IKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +
Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 AGYEPDPSIKA 384


>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 452

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L   LL E+   +   
Sbjct: 15  AVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNESPVLAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  I++ TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +   N     +      V    +   + +++  H  +  +VF  
Sbjct: 194 IKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 374 PGYEPDPTIKA 384


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A+   L 
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 188/345 (54%), Gaps = 8/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   ++   A   + +A+ IGG+S   +   L  G  I++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLMRGVDILIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILR-YHGAKNAIV 249
             + + +  +  +V I+      + +    + +  SD   +   +  +LR     KNAI+
Sbjct: 192 RRITETFLHNPEKVEISRPASTATTVTQSQIGIG-SDAHAKRELLRQLLRDAKDLKNAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ +  V+   K L +H F   AL G++ Q  R  AL   R G   + +A+DVAARG+D
Sbjct: 251 FCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLVASDVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +P++  V + ++  +P++ +HR GRTGRAGR G ++ ++    Q+
Sbjct: 311 IPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQK 355


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 184/325 (56%), Gaps = 11/325 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P  + +DV+  AQ+G+GKT  F +++  ++  +           AL ++PT
Sbjct: 46  SAIQQRAILPITKGRDVIAQAQSGTGKTATFSISILQSIDTQ------IRETQALVLSPT 99

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   +  L     +    CIGG S+  + R L +G H+V GTPGR+ D IR + 
Sbjct: 100 RELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRKLDHGQHVVSGTPGRVYDMIRRRN 159

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L   ++K +VLDEADE+L+LGF+D I  +    P + ++++ SAT+   +  +   +  D
Sbjct: 160 LRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQTQVVVLSATLPYDVLEMTTKFMTD 219

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            +R+ +  +      I  +   VA+   +   + + ++        A++FC+TR  V   
Sbjct: 220 PIRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 277

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ + E  F V ++ G++ Q+ER   +   R+G +RV I TDV ARGID+  + LVI+ +
Sbjct: 278 TEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVLITTDVWARGIDVQQVSLVINYD 337

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L SN EN +HR GR+GR GRKG+++
Sbjct: 338 LPSNRENYIHRIGRSGRFGRKGVAI 362


>gi|315126555|ref|YP_004068558.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
 gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
          Length = 440

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 190/337 (56%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N  H VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPHFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192
           L DH++ + L +S L+ ++ DEAD +LDLGF D ++ I + +  + R+ L+FSAT+  A 
Sbjct: 134 LADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRLRQTLLFSATLDHAQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           +  L++N  K   ++ +++ N QHSDI     L    D   A++ + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDNVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+ VAL+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSESLNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLV 350


>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 516

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/398 (34%), Positives = 207/398 (52%), Gaps = 41/398 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58
           P+++  AL   GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 44  PEIV-SALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 102

Query: 59  -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                  A     + DR +    P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 103 SQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHLRRLRTV 162

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 163 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 216

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF DDIE I+ ++P  R+ ++FSAT+   I +L      +  R+ I ++    ++I 
Sbjct: 217 LDMGFIDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKIESRANIA 276

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                V   D +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L 
Sbjct: 277 QTVHYVDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLP 336

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAG
Sbjct: 337 QGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAG 396

Query: 340 RKGMSVFVI---PQNMQRRAERLFREA---NVSVVWEP 371
           R G +V ++    Q   +R ER  R     NV   +EP
Sbjct: 397 RSGTAVSLVHHAEQGALKRIERFVRSPLPVNVIEGFEP 434


>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
 gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
          Length = 437

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 9/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   LL+++++ +   
Sbjct: 15  AVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQ-LLSQHEQPAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLD-LEQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     I+     V    +   +  ++     K  +VF  
Sbjct: 193 IKALANKLLHNPASVEVARRNTASEQIEQSVYFVDKKRKRELLSQMIGAGDWKQVLVFNR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AARG+D+  
Sbjct: 253 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIRVLVATDIAARGLDIDQ 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +  
Sbjct: 313 LPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIAL 372

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 373 PGYEPDPTIKA 383


>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 460

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/383 (33%), Positives = 206/383 (53%), Gaps = 19/383 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAENDR 68
           +L   G    T +Q   +   L  +D++ S++TGSGKT+AF L      +A+  L++ D 
Sbjct: 28  SLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQRVIATKALSKRD- 86

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  L + PTRELA QV  +L  L A T       +GG + + + + L    H V
Sbjct: 87  ------PRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALARDPHFV 140

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSA 187
           V TPGRL DH+  + L ++ L+ ++LDEAD MLDLGF + +  I  ++  KRR  LMFSA
Sbjct: 141 VATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRRQTLMFSA 200

Query: 188 TISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           T+    I  +A    K+   V I + + ++ DI  +  L   LS ++  +  +L+    K
Sbjct: 201 TLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQLEPHK 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F +TR    R   VLAE  F   +LSGEL Q  R+  +     G+ ++ + TDVA+
Sbjct: 261 QVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILVTTDVAS 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ---NMQRRAERLFR 361
           RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++ P+   N ++    L +
Sbjct: 321 RGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQNFLRK 380

Query: 362 EANVSVVWEPAPSVEAIRERDAQ 384
               S + E AP  + ++++ +Q
Sbjct: 381 SFEFSELEELAPKFKGLKDKPSQ 403


>gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
 gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
          Length = 477

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 197/368 (53%), Gaps = 6/368 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL   GY +   VQEA++   L +KD+LV ++TGSGKT +F + +   L+ E     
Sbjct: 12  ICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPIIQDLIWEE---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              +P AL ++PTRELA+Q+  E + + A   +  A   G      + +D++   H+V G
Sbjct: 68  --RSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQAQDVKQRTHVVAG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L    ++ +++DEADEML++GF + ++ I    PK   + MFSAT+ 
Sbjct: 126 TPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPKNASVCMFSATLP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA ++ K A  V I S+      + + A  +   ++  A++ +L     ++ I+F
Sbjct: 186 QEIQELAHDFLKQAEVVEIESQTSVSEQMHHYAYRLKEHEKPQALLKLLCRELPESCIIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  V    ++L +    V  L G + Q++R   ++  R G+ R+  ATDVAARGID+
Sbjct: 246 AKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRILTATDVAARGIDI 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+  +I+ ++ +  E  +HR GR+ R  R G ++  + Q    R + L      ++ + 
Sbjct: 306 QDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQELEEYLGNALEFH 365

Query: 371 PAPSVEAI 378
            +  +EA+
Sbjct: 366 DSSELEAV 373


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 278

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 279 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 338

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 339 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 398

Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            I +++R    +HG    I+FC T+      ++ ++       +L G++ Q++R   L+ 
Sbjct: 399 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKG 455

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    
Sbjct: 456 FRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 515

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
              + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 516 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 556


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 203/357 (56%), Gaps = 34/357 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL++ GY   T +Q   +   L  +D++ SA TG+GKT AF L     L  +  
Sbjct: 10  PRIL-KALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQRLTVKIA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAH 126
           R     AP  L +APTRELA QV  +   +Y K  G+  AV +GGV    + R L     
Sbjct: 69  RRK--GAPRMLVLAPTRELAGQV-MDAARVYGKYLGLTTAVLLGGVPYRDQFRALAKPLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DH++ + +++S L+ +VLDEAD MLD+GF++D++ +  ++P++R+ +MF+
Sbjct: 126 LVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQTMMFT 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIA---------------SENRQHSDIDYRAVLVALSDR 231
           AT++ A+  +A+    D  R++IA               ++NRQH              +
Sbjct: 186 ATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQH--------------K 231

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +  + ++L++     AIVF +T+       + L+   ++  AL G+++Q  R+  ++ +R
Sbjct: 232 NRLLQHLLKHSDISQAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLR 291

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            GR RV +ATDVAARG+D+  +  V + +L    E+ +HR GRTGRAG  G+++  +
Sbjct: 292 RGRIRVLVATDVAARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFV 348


>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 441

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +   V  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 4/341 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL+E+GY N T +Q+  +   L  +D+L  AQTG+GKT AFGL L   L  A  +  S  
Sbjct: 15  ALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGP 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA QV   L   Y+K   + + CI GGV +  +   L+ G  ++V  
Sbjct: 75  RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+ R+ L+FSAT  
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  + ++  ++ +  +N     I +R   V    + + ++++L     +  +VF
Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+
Sbjct: 254 ARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+
Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354


>gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 481

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 197/380 (51%), Gaps = 11/380 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+          
Sbjct: 3   AIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPG 62

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    I+V TPG
Sbjct: 63  RPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPG 122

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S  I
Sbjct: 123 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEI 182

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+    D   V++   N     +     LV    + + + +++R  G    +VF  T
Sbjct: 183 RSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFTRT 242

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 243 KHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQL 302

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR---EANVSV 367
             V++ EL + PE+ +HR GRTGRAG  G +V ++  +   + +  ERL +   E     
Sbjct: 303 PQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVD 362

Query: 368 VWEP---APSVE--AIRERD 382
            W P    P+ E  A RER+
Sbjct: 363 GWTPPAGGPTAEDRADRERE 382


>gi|302553973|ref|ZP_07306315.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471591|gb|EFL34684.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/327 (37%), Positives = 178/327 (54%), Gaps = 16/327 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPAS---APLALAIAPTRELA 87
           L  KDV+  A+TG+GKT+ FGL L   +    D    R  P +   AP AL + PTREL 
Sbjct: 7   LSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAEPEALTEAPQALVVVPTRELC 66

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
            QV  +L        V V    GG +   +   L+ G  +VVGTPGRL D    K LN+ 
Sbjct: 67  TQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLK 126

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
           H+K++VLDEADEMLDLGF  D+E I++  P +R+ ++FSAT+  A+  LA+ Y      +
Sbjct: 127 HVKSLVLDEADEMLDLGFLPDVEKIINMLPVRRQTMLFSATMPGAVIGLARRYMSQPTHI 186

Query: 208 NIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +  S +   + +       YRA  +   D+   +  IL+  G   A+VFC T+ + +   
Sbjct: 187 SATSPDDAGATVANTKQYIYRAHNM---DKPEMVARILQAEGRGLAMVFCRTKRTAADLA 243

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ + 
Sbjct: 244 DQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS 303

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348
               +  LHR GRTGRAG KG ++ ++
Sbjct: 304 PEEEKTYLHRIGRTGRAGAKGTAITLV 330


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 4/341 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL+E+GY N T +Q+  +   L  +D+L  AQTG+GKT AFGL L   L  A  +  S  
Sbjct: 15  ALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRSGP 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA QV   L   Y+K   + + CI GGV +  +   L+ G  ++V  
Sbjct: 75  RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+ R+ L+FSAT  
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  + ++  ++ +  +N     I +R   V    + + ++++L     +  +VF
Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHLLAQDSREQTLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+
Sbjct: 254 ARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+
Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 190/377 (50%), Gaps = 8/377 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 15  AVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMITLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV            + VA+ IGGVS   + R L+ GA +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLERGADVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L +  +  +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+   I
Sbjct: 132 RLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFSATMPSEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250
             L   + ++  +V +A  +     +  R       D +          GA   +NAIVF
Sbjct: 192 QRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIEGAEDLQNAIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   + L  H F V AL G++ Q+ R   L   + G  ++ +A+DVAARG+D+
Sbjct: 252 CNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW- 369
           P +  V + +L    E+ +HR GRTGRAGR G ++ ++    ++  + +       + W 
Sbjct: 312 PSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAINETIGKELEWV 371

Query: 370 -EPAPSVEAIRERDAQR 385
            EP      + E+ ++R
Sbjct: 372 GEPVDFSAPVEEKKSRR 388


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 189/336 (56%), Gaps = 6/336 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT +F L +   L A   
Sbjct: 17  PELL-QAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEILAAGRA 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +   A  P +L +APTRELA QV    +       +  A+ IGG S+  +   L  G  +
Sbjct: 76  K---ARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILDRGVDV 132

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ TPGRL D   RG+ L ++ +K +V+DEAD MLD+GF  D++ I+   PK R+ L FS
Sbjct: 133 LIATPGRLLDMFDRGRIL-LNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQTLFFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  +  +   +++++++     ++    +V   D+   + +I+R    KN
Sbjct: 192 ATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKRETLRHIIRIENLKN 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A +FC+ +  V    K L +H F VV + G++SQ  R  +L   + G AR+ + +DV AR
Sbjct: 252 AFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLVCSDVVAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GID+  +  V + ++  + E+ +HR GRTGRAG  G
Sbjct: 312 GIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETG 347


>gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
          Length = 462

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/392 (33%), Positives = 201/392 (51%), Gaps = 13/392 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   Y  +T +Q+  L   L  +DV+  A+TGSGKT AFGL +   L  E  R      
Sbjct: 18  LNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQALQVERFRIQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             +L + PTRELA QV +EL  L  A   + +    GG+    +   L +GAHI+VGTPG
Sbjct: 74  --SLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGSLAHGAHIIVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ +H+R   L +  ++ +V DEAD MLD+GF++ I+ I+D  P +R+ L+FSAT    I
Sbjct: 132 RIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQRQTLLFSATYPDEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCS 252
            +L     + A  V + S + Q   I+ R     +  DR      +L      N ++FC+
Sbjct: 192 DSLCARVTRKATLVQVESAH-QADVIEQRFYRTESFDDRLQMSQRLLLNDKPMNTLIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L +  F  +AL G++ Q++R+  L    +G   V +ATDVAARG+D+  
Sbjct: 251 TKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVATDVAARGLDIDK 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+ VI+  ++ +PE   HR GRTGRAG +G +     +    +  R+    +     +  
Sbjct: 311 LDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKEGHKLLRMDLAQDPLGHPDTP 370

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           PS E +     Q   Q P+    I G +K+ V
Sbjct: 371 PSAEVLN----QSPFQAPMATLQIDGGKKQKV 398


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   + +QE  +   L  +DV+ +AQTG+GKT  F L +   L  +N    
Sbjct: 12  ILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPILERL--DNGTRV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129
             +   AL + PTRELA QV +E  + Y++   +   V  GGV ++ +   L+ G+ IVV
Sbjct: 70  KGNHVRALILTPTRELAAQV-QENVFKYSRYQRLTSTVVFGGVKINPQMLKLRKGSDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT 
Sbjct: 129 ATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V ++++ EN     I+          +   +V +++    K  +V
Sbjct: 189 SQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWKQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   +R    L +       + G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLV 347


>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 485

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 177/336 (52%), Gaps = 1/336 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+E GY N T +QE  +   L  +D+L  AQTG+GKT AF + +   L  E  + +
Sbjct: 12  ILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQLLSEERSKST 71

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                +  L + PTRELA+Q+            +   V  GGVS H +   L+ G  +++
Sbjct: 72  GGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNTLKAGVDVLI 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    +++  ++  VLDEAD MLD+GF  D++ ++   P  R+ L FSAT+
Sbjct: 132 ATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTHRQSLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P +  LA     +  +V +   +     I+     V   D+   +V+IL     K+A+V
Sbjct: 192 PPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHILDDKNIKSALV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K L +      A+ G  SQ  R  AL   +    RV +ATD+AARGID
Sbjct: 252 FARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  VI+ EL + PE  +HR GRTGRAG  G+++
Sbjct: 312 VDELSHVINYELPNIPETYVHRIGRTGRAGHDGIAL 347


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 187/345 (54%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E G     ++QE  L   L   D++  A+TG GKT AFG+ L   +  + ++  
Sbjct: 21  ICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQRVTTDTEK-E 79

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +  P AL + PTREL +QV  +L    ++L A    +  V I GG     +   L+ GA
Sbjct: 80  LSGIPRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYEPQIESLRKGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  +P  R+ ++F
Sbjct: 140 DVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQTPDTRQAMLF 199

Query: 186 SATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I TLA+ +  Q   +R      +  H      A      D+   +  IL+  G
Sbjct: 200 SATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVEMVSRILQADG 259

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +ATDV
Sbjct: 260 RGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTGEVDVLVATDV 319

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 320 AARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 364


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 205/379 (54%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +G+AL+E      YV  T VQ   +   +  +D++  AQTGSGKT AF   + S +++  
Sbjct: 181 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMSSR 240

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  +H++ R+L+
Sbjct: 241 PPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQQLRELE 300

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179
            G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 301 RGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 360

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  +A ++  D + + +         I  R   V  +D+ + ++++
Sbjct: 361 VRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLMDL 420

Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L        HG +   +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 421 LHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQEREYALRSFK 480

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     + 
Sbjct: 481 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEG 540

Query: 351 --NMQRRAERLFREANVSV 367
             ++ R    L +EAN  V
Sbjct: 541 NLSLARPLCELMQEANQEV 559


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 197/367 (53%), Gaps = 9/367 (2%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +QE  +   L+ +D+L  AQTGSGKT+AFGL + S +L   D+ SP +A  AL + PTRE
Sbjct: 43  IQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQILTFGDKRSPKTAR-ALILVPTRE 101

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LAVQ+   +  +     +   + +GGVS  ++ + +  G  +V+ TPGRL D +R K ++
Sbjct: 102 LAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMGAGVDVVIATPGRLMDLVREKFVD 161

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +S  + +VLDEAD MLD+GF +D+  I     K+ +  +FSAT+   I  LA     + V
Sbjct: 162 LSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQTALFSATMPKEIKELANGLLNEPV 221

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
           ++ +  +     +I  +   V  +++ N +  +L      + IVF  T+      T+ L 
Sbjct: 222 KIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLLVNPDLISVIVFIRTKHGADAITRYLK 281

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
                V  + G  SQ  R +AL+  R+G  +V +ATD+AARGID+P +  VI+ +L  + 
Sbjct: 282 NMGHAVATIHGNKSQNARQSALKAFREGSVKVLVATDIAARGIDIPGVSHVINYDLPEDA 341

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLFR----EANVSVVWEPAPSVEA 377
           E+ +HR GRTGR G  G ++ +  +  +    R  ER+ R      NV + +E  P    
Sbjct: 342 ESYVHRIGRTGRNGASGDAITLFDEESEESRLRAVERIIRMKLTRENVPLQYETYPEKPF 401

Query: 378 IRERDAQ 384
             E D +
Sbjct: 402 TLESDEK 408


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 28/391 (7%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P ++  AL + G+   T+VQ + +   L   D++VS+QTGSGKT AF L  A 
Sbjct: 3   FENLGLAPALL-SALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLP-AL 60

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIG 110
             +A+     PA+  +    L +APTRELA+QV       GR+L  L        A  +G
Sbjct: 61  HRIAQ----MPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLR------TATVVG 110

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+    + + L     ++V TPGRL DH+    + ++ +  +VLDEAD MLD+GF +DIE
Sbjct: 111 GMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIE 170

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--L 228
            I+   P +R+ L+FSAT+   +  LA    +D  R+ +A    +H++I  +++L A   
Sbjct: 171 TIISRLPVERQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNI-TQSLLYADDA 229

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S +   + ++LR      AIVF ST+         LA+  F   AL G+++Q++R+  L 
Sbjct: 230 SHKMQLLDHVLRDASLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLS 289

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++ G+ R+ +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  + 
Sbjct: 290 QLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLA 349

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
             + + +  R+      S+  E    +E  R
Sbjct: 350 THSERHKVRRIEHYIGQSITPEVIAGLEPKR 380


>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 480

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 7/371 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L     +  S 
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373

Query: 368 V--WEPAPSVE 376
           +  +EP P+ +
Sbjct: 374 IAGFEPDPNAK 384


>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 465

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA  + G+   T +Q+  +   L ++DV+  AQTGSGKT AF L +   L      F   
Sbjct: 59  EACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF--- 115

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ +APTRELA Q+  + E +    GV   V +GG+ +  +   L    H++V TP
Sbjct: 116 ---FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTP 172

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +++DEAD +LD+ F   I+ IL   P +RR L+FSAT++ 
Sbjct: 173 GRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTS 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +      VRV ++S+      +  R +      +D  +V ++      + I+F 
Sbjct: 233 KVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFA 292

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T     R   +L    F  + L G+LSQ  R  AL   + G     +ATDVAARG+D+P
Sbjct: 293 RTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIP 352

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q
Sbjct: 353 LVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQ 391


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/334 (35%), Positives = 182/334 (54%), Gaps = 3/334 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  A+ E GY + T +Q   +   L+  DVL  AQTG+GKT +F L +   L     R
Sbjct: 300 EPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQKLAGSRAR 359

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P +L + PTRELA+QV    +       +  A+ IGG S+  +R  L  G  ++
Sbjct: 360 ---ARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRGVDVL 416

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D     GL ++    +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT
Sbjct: 417 IATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLFFSAT 476

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++P I  LA  + +  V + ++ ++   + I+   V+V   ++   +  +LR    ++AI
Sbjct: 477 MAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRTLKKLLRRENVQSAI 536

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+ +  V    + L +H  +   L G+L+Q  R + L+  R G  +  + +DVAARGI
Sbjct: 537 VFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCSDVAARGI 596

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+  L  V + +L  N E+ +HR GRTGRAG +G
Sbjct: 597 DIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEG 630


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P    V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 193/360 (53%), Gaps = 15/360 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++   MQ   +R +     SVV E  P+
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMQFDIQRFY-----SVVIEELPT 408


>gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
 gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
          Length = 513

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 188/350 (53%), Gaps = 11/350 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+   + + + + + G+   T +QE  +   L+E+DV+  AQTG+GKT AF L +   
Sbjct: 19  FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILE- 77

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L  N          AL I PTREL +QV  E+  L     +      GG S+ R+   L
Sbjct: 78  MLHHNQSIE------ALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL DH++   L+    + VVLDE+DEMLD+GF DDIE I +  P   +
Sbjct: 132 AKNPQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +L+FSAT+  AI  LA+    + + + I  + N  + D+     ++   +R  A++ IL 
Sbjct: 192 VLLFSATMPEAIKKLAQRILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMRILD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+F  T+         L    ++   L G++ Q++R  A+   +    ++ +A
Sbjct: 252 TENIYKSIIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVA 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           TDVA+RG+D+ D+  V +  + +N E  +HR GRTGRAG+KG ++ FV P
Sbjct: 312 TDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTP 361


>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 422

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 12/377 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68
           + ++E G+   T +QE  +   L   D++  AQTG+GKT AFGL +   LLA    E+D 
Sbjct: 14  DTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHDE 73

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL + PTRELA QV   +      T + VAV  GG S+  + + L++G  
Sbjct: 74  GYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH     +++S ++ +VLDEAD MLD+GF  DI+ I+   P+KR+ L+FS
Sbjct: 134 ILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +  LA +   D   + +  EN     +      V    +   +  ++       
Sbjct: 194 ATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIGSRNWNQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  +ATDVAAR
Sbjct: 254 VLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREAN 364
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G  +S+  I +    RA     +  
Sbjct: 314 GLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIEELLDTR 373

Query: 365 VSVVW----EPAPSVEA 377
           +   W    EP P+++A
Sbjct: 374 LPQEWLEGYEPDPTIKA 390


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 162/566 (28%), Positives = 273/566 (48%), Gaps = 30/566 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  A+++ G+V  +++Q   +   L  +D++  AQTG+GKT AFGL L + + A 
Sbjct: 31  GLPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAAVDAG 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
                      A+ + PTRELA+QV   +        G+ V    GG     ++R +  G
Sbjct: 91  TAGVQ------AIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIARG 144

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DH+    L +  ++ +VLDEADEML +GF +D++ +L S+P +R++ +
Sbjct: 145 AQVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQVAL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +    V + +A ++   + +     +V    +  A+  +L    A
Sbjct: 205 FSATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTYAVVPYRHKIGALGRVLAVTDA 264

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  TR +       L E       +SG+++Q +R   +  +R G   V +ATDVA
Sbjct: 265 DATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVA 324

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARG+D+  + LV++ ++    E  +HR GRTGRAGR+G+++ FV P   Q R   + R  
Sbjct: 325 ARGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAE-QSRLRTIERTT 383

Query: 364 NVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKH---DPEKIAA 418
            V++   P P+  E    R A  + + P   +  + D  ++ V   LA H   DP ++ A
Sbjct: 384 RVTLEQVPIPTPAEVSAHRVALLLGRTPARAELGRLDVYREAVAAHLAAHPGTDPIELLA 443

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFR-DDSRAFKVGGGSRDNFK----------GSS 467
               +   G   P       L    +R R    R  +VGG  R   +          G  
Sbjct: 444 AVTALA-VGDEGPTPRDGDDLDDALERARLTPGRHERVGGDDRPPRERRRAETHIAGGPP 502

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + ++VG +   +   L+  L    G+  + +G I +      V++    SAD VD L R
Sbjct: 503 RWRVAVGHRDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFALVDIPGGLSADVVDRLSR 562

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSS 549
           T    + ++++   G +P     + S
Sbjct: 563 TRVAGRPLRIRVDTGPRPGHGASRPS 588


>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 479

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 196/341 (57%), Gaps = 11/341 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++S  G+ + T++Q  +L   L+ +D++  A+TGSGKT AFGL +   LL    RF    
Sbjct: 65  SVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRTQRF---- 120

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL +Q+ +++  +    GV V   +GG+  + +   L    H+VVG+PG
Sbjct: 121 --YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 178

Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190
           R+ DH++  KG ++  +K +VLDEAD +L L F   ++ +L+   SP +R+ ++FSAT++
Sbjct: 179 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 238

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             ++ L K   K  V++ + S+    S +    +LV    +   +   L +    + IVF
Sbjct: 239 TKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 298

Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            +T A+ +R T +   HL FQ V L G+++Q +R  AL   R       +AT+V +RG+D
Sbjct: 299 TNTCAN-ARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 357

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q
Sbjct: 358 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 398


>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 451

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184

Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
           FSAT+    I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +V + TD
Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/338 (36%), Positives = 182/338 (53%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFS 70
           +A+ ++GY   + +QE  + P L  KDVL SAQTG+GKT  F L L   LL+E    R  
Sbjct: 14  KAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH-LLSEQKALRHR 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A   L + PTRELA Q+   ++       +  AV  GGV+   +  +L+ G  ++V 
Sbjct: 73  PVRA---LILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIANLKRGMDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + L++  ++  VLDEAD MLD+GF  DIE ++   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA     + ++V    EN     I  +   VA   +   I+ ++     +  +VF
Sbjct: 190 KDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLISDGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   K ++       A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 TRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  VI+ E+ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 310 PLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLV 347


>gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 3 [Canis familiaris]
 gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
           sapiens]
          Length = 634

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 29/369 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 211 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 270

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 271 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 330

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 331 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 390

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 391 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 450

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 451 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 510

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 511 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 570

Query: 337 RAGRKGMSV 345
           RAG+ G+++
Sbjct: 571 RAGKSGVAI 579


>gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 451

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184

Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
           FSAT+    I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +V + TD
Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  L++ Y  + VR+ + + N+  ++I   ++ ++  ++ + +   L 
Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 345


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 188/349 (53%), Gaps = 4/349 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +GY   T +QE  +   L  KD+L  AQTG+GKT AF + L   LL    R +P S
Sbjct: 16  ALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPLLQRLLESRYRAAPKS 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              +L + PTRELA Q+ + ++    +T +  +  +GGV    +   LQ G  ++V TPG
Sbjct: 76  V-RSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQFHALQRGLDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R  G++   L+  VLDEAD+MLDLGF  ++E I    PKKR+ L FSAT+   I
Sbjct: 135 RLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPKKRQTLFFSATMPREI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ +  + V V+ A        +  +   +    +   +  +L     + A+VF  T
Sbjct: 195 RDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKELLEKDECERALVFTLT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R    L        A+ G++SQ ER   L   + G+ +  +ATDVAARGID+ D+
Sbjct: 255 KKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTLVATDVAARGIDVSDI 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359
             VI+ ++ +  EN +HR GRT RAG+ G ++ F +P++  M R  ++L
Sbjct: 315 SHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRAIQKL 363


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 190/346 (54%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184

Query: 185 FSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
           FSAT+    I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +V + TD
Sbjct: 245 THKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
          Length = 472

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 194/345 (56%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++  A    G+   T +Q   +   L  +D++   QTGSGKT AFGL +   LL ++
Sbjct: 49  VPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPIIQALLKQD 107

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A  ++PTRELA Q+G++ E L +  G+   V +GGV   ++   L    H
Sbjct: 108 K----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPH 163

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVVGTPGRL DH+   KG +++ LK +VLDEAD++L++ F+  ++ IL+  PK+RR  +F
Sbjct: 164 IVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLF 223

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L +   ++ V+V +AS+      +      V    +D  +V++L      
Sbjct: 224 SATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGS 283

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T  S       L    F+ +++SG++SQ +R  AL   +     + I TDVA+
Sbjct: 284 MIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVAS 343

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+  +++VI+ ++  N ++ +HR GRT RAG  G +V ++ Q
Sbjct: 344 RGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQ 388


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D        L L
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLDYGLVECQSLVL 115

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           A  PTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 116 A--PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV++   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPA 408


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 198/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N       
Sbjct: 15  AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252
            TLA+    +  +V +A  N     +     LV    R   ++++L   G  +  +VF  
Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARGID+ +
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ER+  RE     +
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 374 DGFEPDPAIKA 384


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 192/375 (51%), Gaps = 22/375 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +Q+  +   L  +DVL  AQTG+GKT AF L +   L A+    +PA 
Sbjct: 15  AVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQRLSAK----APAG 70

Query: 74  A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P+  L + PTRELA QVG           +  AV  GGV  + + + L+NG  ++V 
Sbjct: 71  GARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQTLRNGVDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    +++  L+  VLDEAD MLD+GF  D+  ++ + P KR+ L FSAT+ 
Sbjct: 131 TPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKRQTLFFSATLP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA++   D +RV +   +     +  +   V    +   + ++L+      A+VF
Sbjct: 191 PDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLKEGNIHRALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R  AL   R G  RV +ATD+AARGID+
Sbjct: 251 TRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFREANV 365
             L  V++ +L + PE  +HR GRTGRAG  G +V     + + RA     ER  R  NV
Sbjct: 311 DGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFC--DAEERAYLRDIERTIRR-NV 367

Query: 366 SVV-------WEPAP 373
            VV        +PAP
Sbjct: 368 PVVEDHPYRSGQPAP 382


>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 492

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 182/344 (52%), Gaps = 8/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +Q+  +   L  +D+L  AQTG+GKT AF + L    L   D+ +  
Sbjct: 40  KALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ--LMHQDQQAQQ 97

Query: 73  SAPL----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              L    AL + PTRELA+Q+            +   V  GGVS H +   L+ G  I+
Sbjct: 98  RKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQTEALKKGVDIL 157

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I    + +  +K  VLDEAD MLD+GF  D++ ++   P++R+ L FSAT
Sbjct: 158 IATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLPEQRQSLFFSAT 217

Query: 189 ISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           + P I TLAK   + +  +V +   +     I      V  +D+ N +++IL+    K  
Sbjct: 218 MPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLLHILKDKAIKTL 277

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    R  K L +      A+ G  SQ  R  AL   +  + RV +ATD+AARG
Sbjct: 278 LVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTRVLVATDIAARG 337

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           ID+ +L  V++ EL + PE  +HR GRTGRAG  G+++ F  P+
Sbjct: 338 IDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPE 381


>gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 610

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 184/326 (56%), Gaps = 6/326 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYV  T VQE +L   L   D+ V +QTG+GKT A+ +++   +L   +     +   AL
Sbjct: 20  GYVTCTPVQEQVLKGSLEGADLYVQSQTGTGKTAAYLISIIQEMLTREE----VAGKKAL 75

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV +E + L   T +      GGV   ++   L+N  +I++GTPGR+ D 
Sbjct: 76  VMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTAMLKNNVNIIIGTPGRVIDL 135

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196
                +++S +  +V+DEAD M D+GF  D+  ++   PK   R+ ++FSAT++  +  L
Sbjct: 136 QESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVLPKTHDRQTMLFSATLNTYVKNL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A  Y ++A  + I +E     +ID   + V+   +   ++ IL++   ++ IVFC+T+ S
Sbjct: 196 AWEYTEEAKEITIEAEQLTVEEIDQVLLHVSSDSKMKLLLGILQHEKPESVIVFCNTKRS 255

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K L  +  +   + G+L Q +R   L+  + G  +  +ATDVAARGID+ DL +V
Sbjct: 256 CEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKRGSLKCLVATDVAARGIDVNDLAMV 315

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG 342
           ++ +L +  EN +HR GRT RAG+ G
Sbjct: 316 VNYDLPNESENYVHRIGRTARAGKSG 341


>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
 gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
          Length = 461

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/382 (35%), Positives = 206/382 (53%), Gaps = 26/382 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT  F L +   L     
Sbjct: 11  PKVM-KAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPMIHKLARGRA 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L +APTRELA QV    E       + +A+ IGGVS   + R +  G  +
Sbjct: 70  R---ARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQDRLIDRGVDV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  R+ L FSA
Sbjct: 127 LIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPFTRQTLFFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRA---VLVALSDRDNAIVNIL 239
           T++P I  + + + ++   V +A     SEN   + I ++A    L A   RD  +  I+
Sbjct: 187 TMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKKRD-LLRTII 245

Query: 240 RYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  G K  N IVFC+ +  V    K L +H   V A+ G+L Q+ R   L   ++    +
Sbjct: 246 KDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAGFKNNDITL 305

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR-- 354
            +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG + +  +P  ++   
Sbjct: 306 LVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCLPHEIKHLD 365

Query: 355 RAERLFREANVSVVWEPAPSVE 376
           + E L        V +P P +E
Sbjct: 366 KIEEL--------VKQPIPRLE 379


>gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 456

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 190/339 (56%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   T +Q   +   L+ +DV+   QTGSGKT AF L +   LL     F   
Sbjct: 39  EACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGSGKTGAFALPIIQALLEHRQPF--- 95

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  ++PTRELA+Q+  + E L +  G+V +V +GGV   ++   +    HIVVGTP
Sbjct: 96  ---FACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDRMQQVLSIAKRPHIVVGTP 152

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++  KG +++ +K +VLDEAD++L+L F++ ++ IL   PK+RR  +FSAT++ 
Sbjct: 153 GRLLDHLKDTKGFSLTKVKYLVLDEADKLLNLEFKESLDDILKEIPKERRTYLFSATMTK 212

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            ++ L +   ++ V+V ++S+      +      V    +D  +V++L        ++F 
Sbjct: 213 KVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADYKDCYLVHVLNELQGSMIMIFV 272

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S       L    F+ +++SG++SQ +R  AL   +     + I TDVA+RG+D+ 
Sbjct: 273 RTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNILICTDVASRGLDIQ 332

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++V++ ++  N ++ +HR GRT RAG+ G +V  + Q
Sbjct: 333 GVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFVNQ 371


>gi|220914235|ref|YP_002489544.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219861113|gb|ACL41455.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 631

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 4/365 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+ + + L+ +G V    +Q   L   L  +DVL   +TGSGKT+AF + L + L   E 
Sbjct: 10  PKALADTLTAQGIVEPFPIQVKTLPDTLSGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+ + L+ G  
Sbjct: 70  KHFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEKALRAGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL D IR + L++  ++  VLDEAD M DLGF   ++ ++D +P + + L+FS
Sbjct: 130 IVIACPGRLEDLIRQRILSLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQGQRLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+   +  + + Y  + +  ++       + +++  ++V   + +   IV +    GA 
Sbjct: 190 ATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K L +     V L G LSQ  R   L    +G  RV +ATDVAA
Sbjct: 248 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   ++L + A V
Sbjct: 308 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGV 367

Query: 366 SVVWE 370
            V +E
Sbjct: 368 EVSFE 372


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 198/347 (57%), Gaps = 14/347 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E  +V  T VQE  +   ++ +D++V ++TGSGKT+AF + +   L          S
Sbjct: 18  ALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENL---------NS 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ + PTRELA QV R    +    G    V  GG  + R+   L+ GA +V+GTPG
Sbjct: 69  GLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-GASMVIGTPG 127

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +R   LN++ ++  VLDEAD MLD+GF DDI++IL  +PK ++M++FSAT+ P I
Sbjct: 128 RVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEI 187

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+ Y K+  ++ ++ +     ++    V V   ++   + ++L     K  ++FC+T
Sbjct: 188 ISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGK-YLIFCNT 246

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R       ++L ++ F+  AL G++ Q  R+  +   + G+  + ++TDVAARGID+  +
Sbjct: 247 RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357
             V++ ++   P++ +HR GRTGR    G ++ FV  ++ +  RR E
Sbjct: 307 THVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 178/333 (53%), Gaps = 1/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+++GY   T +Q   +   +  +D+L  AQTG+GKT AF L +   L AE+ + +P 
Sbjct: 15  KALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPILHRL-AEDKKPAPR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTRELA Q+           G+ VA   GGV    + + L  G  +VV TP
Sbjct: 74  RGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQMKALAAGVDVVVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K  +++ ++  VLDEAD+MLDLGF   I  I    PK+R+ L FSAT+   
Sbjct: 134 GRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPKERQNLFFSATMPSE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    K+  +V I         ID   + +    +   +  +L     + +IVF  
Sbjct: 194 IGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQRKRPLLAELLADKSVERSIVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L     +  A+ G+ +Q +R  AL   + G+ +  IATD+AARGID+ D
Sbjct: 254 TKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKALIATDIAARGIDVND 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V + EL + PE+ +HR GRT R G++G+++
Sbjct: 314 VSHVFNYELPNVPESYVHRIGRTARKGKEGIAI 346


>gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 504

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 189/369 (51%), Gaps = 6/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L   G+     +Q A L   L  +D+L   QTGSGKT+AFGLAL S L   
Sbjct: 68  GLPEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLSRLAGG 127

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P  L + PTRELA QV   L+      G+  A  +GG+S +R+   L  G 
Sbjct: 128 R---AVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALARGV 184

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH   +  ++S ++   +DEAD M D+GF   +  ILD +P   + L+F
Sbjct: 185 DLLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRLLF 244

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V   +AS       +D+  +LV    +   +  I    G  
Sbjct: 245 SATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLLLVDSVTKARVVAEIAARDG-- 302

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R+ + L         L G  SQ +R+ A+   ++GR  V +ATDVAA
Sbjct: 303 RTILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVLVATDVAA 362

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +   +P++ LHR+GRT R G  G  V ++    +R  + L R+A V
Sbjct: 363 RGIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDTLTRQAGV 422

Query: 366 -SVVWEPAP 373
              V + AP
Sbjct: 423 RPTVHDAAP 431


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 3/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L  +D+L  AQTG+GK+ AF L +   L   N   +  
Sbjct: 14  KAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPILQQL---NSLPNKE 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL +APTRELA+Q+   +        +   V  GGV+++ +   L+ G  I+V TP
Sbjct: 71  KAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISGLKKGIDILVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  + L +  +   VLDEAD MLD+GF  DI+ ++   P KR+ L FSAT+ P 
Sbjct: 131 GRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKRQTLFFSATMPPE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT LA    K+ VRV +   +     +      V  +++   ++++L+     + +VF  
Sbjct: 191 ITKLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLKSEVRDHVLVFTR 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K LA+   Q  A+ G  SQ  R NALQ  + G+ +V IATD+AARGID+ +
Sbjct: 251 TKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLIATDIAARGIDVEE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L+ VI+ +L + PE  +HR GRTGRAG  G ++
Sbjct: 311 LKFVINFDLPNEPETYVHRIGRTGRAGASGKAL 343


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 190/348 (54%), Gaps = 10/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ ++  + +   G+   T VQ   +   +   DVL SAQTGSGKT AFG+ +   L+  
Sbjct: 10  SLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGIPVIEHLVQN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTREL  QV +    L      +  A  +GG S+ ++ R L+  
Sbjct: 70  KSNN-------ALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSITQQSRALKKR 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
              ++GTPGRL D I    L++S  K  V DE D MLD+GF + IE I+   P KR+M+M
Sbjct: 123 PRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAKLPVKRQMMM 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  +A+ Y     R+++  EN    +++   + V   ++   +V++LR  G 
Sbjct: 183 FSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFETLVSLLRAKGG 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F  T+ SV    K L +  F+  ++ G   Q +R+ A++  R+ +  + +ATDVA
Sbjct: 243 -STLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKFDILVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ARG+D+P ++LVI+ +L    E+ +HR GRT RAG KG+++ FV P +
Sbjct: 302 ARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPND 349


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/347 (35%), Positives = 194/347 (55%), Gaps = 23/347 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---------ENDRF 69
           GY + T VQ   +   L  +D++  AQTGSGKT AF L + S L+A         E   F
Sbjct: 103 GYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSF 162

Query: 70  SPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           + A+A P AL +APTRELA Q+  E +    +TG+ V V  GG  ++ + RDL+ GA I+
Sbjct: 163 NRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADIL 222

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLM 184
           V TPGRL D +    +++  +K +V+DEAD MLD+GF   I  I++  + P+K  R+ ++
Sbjct: 223 VATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTML 282

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           FSAT  P I  LA ++  + + + +         I  +  L++  ++   ++++L+    
Sbjct: 283 FSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSV 342

Query: 243 GAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           G  N+       +VF  T+         L    F   A+ G+ +QQER +AL+  + G  
Sbjct: 343 GVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLT 402

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            + +ATDVA+RG+D+P++  VI+ +L  + E+ +HR GRTGRAG+ G
Sbjct: 403 PIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAG 449


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 212/401 (52%), Gaps = 22/401 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 307

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 427

Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            I +++R    +HG    I+FC T+      ++ ++       +L G++ Q++R   L+ 
Sbjct: 428 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIKQ-DAQSLHGDIPQKQREITLKG 484

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    
Sbjct: 485 FRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 544

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
              + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 585


>gi|303316314|ref|XP_003068159.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107840|gb|EER26014.1| ATP-dependent RNA helicase DBP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 512

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 189/317 (59%), Gaps = 11/317 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AFGL     +L  N+  + +  P AL I PTRELAVQ+  +L   
Sbjct: 134 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 192

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            +   V +A   GG     +RR+++N A +V+ TPGRL D    + +N+S +K +VLDEA
Sbjct: 193 SSAVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 251

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213
           D MLD GF  DI+ I+   P  +KR+ +MF+AT    +  LA ++ K+ V V I  +S+ 
Sbjct: 252 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 311

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268
           R +  I     ++   ++D+ ++ +LR +  GAKN    +VFC  +    R  + +    
Sbjct: 312 RANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKG 371

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F+V  + G++SQ ER  +L+  + G   + +ATDVAARG+D+P ++LV++       E+ 
Sbjct: 372 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 431

Query: 329 LHRSGRTGRAGRKGMSV 345
           +HR GRTGRAG +G+++
Sbjct: 432 VHRIGRTGRAGAEGLAI 448


>gi|46200197|ref|YP_005864.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
 gi|46197825|gb|AAS82237.1| heat resistant RNA dependent ATPase [Thermus thermophilus HB27]
          Length = 517

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/330 (36%), Positives = 176/330 (53%), Gaps = 8/330 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++ EAL  RG    T +Q A L   L  KD++  A+TG+GKT+AF L +A 
Sbjct: 10  FKDFPLKPEIL-EALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R      P AL + PTRELA+QV  EL  +     VV     GG    +++  
Sbjct: 69  RLAPSQER---GRKPRALVLTPTRELALQVASELTAVAPHLKVV--AVYGGTGYGKQKEA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA  VV TPGR  D++R   L++S ++  VLDEADEML +GF +++E +L ++P  R
Sbjct: 124 LLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+      LA+ Y K+ V +N+  +  +    +  AV   +  R   + ++L 
Sbjct: 184 QTLLFSATLPSWAKRLAERYMKNPVLINVIKD--EPVTYEEEAVPAPVRGRLEVLSDLLY 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF  T+A      + L        AL G+LSQ ER   L   R G  RV +A
Sbjct: 242 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLH 330
           TDVAARG+D+P ++LV+H  L    E   H
Sbjct: 302 TDVAARGLDIPQVDLVVHYRLPDRAEAYQH 331


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPA 407


>gi|254818841|ref|ZP_05223842.1| ATP-dependent RNA helicase [Mycobacterium intracellulare ATCC
           13950]
          Length = 454

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 191/360 (53%), Gaps = 4/360 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L S L   N R  
Sbjct: 16  IVSALAARGITHPFPIQVETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSRLSRGNRR-- 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA  P  L +APTRELA Q+   LE L A  G+ V    GGVS  R+   L++G  IVV 
Sbjct: 74  PAR-PSGLVLAPTRELATQITATLEPLAAACGLRVTTIFGGVSQTRQVAALKSGVDIVVA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D ++ + +++  ++  V+DEAD M DLGF   +  IL ++P   + L+FSAT+ 
Sbjct: 133 CPGRLEDLMKQRLISLDAIEITVIDEADHMADLGFLPGVTRILAATPNGGQRLLFSATLD 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L   + +DAV  ++   N   S++ +    V  +     +V+ L   GA   I+F
Sbjct: 193 NGVDKLVTRFLRDAVSHSVDEANSPVSEMTHHVFHVDSAQAKKELVHRL-ASGAGRRILF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L E     V L G LSQ  R   L     G ARV +ATD+AARG+ +
Sbjct: 252 MRTKHQARKLAKQLTESGIPSVDLHGNLSQPARERNLARFAAGSARVLVATDIAARGVHV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    ++    L R+A + V  +
Sbjct: 312 DEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQRQDTRELLRKAGIKVAPQ 371


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 192/363 (52%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P    V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 185/331 (55%), Gaps = 4/331 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQE ++   L   D+ VSA+TGSGKTVA+ L     +L+     +  +  LA+ 
Sbjct: 20  YEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRILSAP--INRKAGALAVV 77

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV +    L  KT +      GG     +R  L+    +++ TPGRL +H 
Sbjct: 78  LVPTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRKNPELIIATPGRLLEHC 137

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAK 198
                ++  L+ ++LDEAD MLD+GFRDD+  +      +R+++M SAT+    +  +AK
Sbjct: 138 EKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVIMLSATLKHKGLGGVAK 197

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +  +D   + ++   + HS I ++ +L  +   +D  +  ++   G   A+VF + R + 
Sbjct: 198 DLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDKGGFTRALVFANKRTTA 257

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            R   +L+ H  +   L GE+S +ER + +   RD +  +  A+DVAARG+D+ D++LV+
Sbjct: 258 QRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDVAARGLDVKDIDLVV 317

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +L    ++ LHR+GRTGRAG  G+++ ++
Sbjct: 318 NYDLPQKGDDYLHRTGRTGRAGATGLAISLV 348


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/342 (37%), Positives = 182/342 (53%), Gaps = 5/342 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY   T VQ   +   L+  D+L  AQTG+GKT AF L +   LL+     SP   
Sbjct: 17  LEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQHLLSNRKMPSPKMV 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL ++PTRELA Q+    +      G+ +A   GGV    + + L  G  ++V TPGR
Sbjct: 77  -RALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQYKALLGGLDVLVCTPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DHI  K +++S ++  VLDEAD+MLDLGF   I  +    PKKR+ L FSAT+   I 
Sbjct: 136 LIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPKKRQNLFFSATMPKEIG 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVFCS 252
            LA     D  RV I  E      +  + VL   + R  A+++ + Y  A  +  +VF  
Sbjct: 196 VLASELLTDPKRVEITPEATTAERVSQQ-VLFIEAQRKRALLSEM-YADAVLERTLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S  R    L     +  A+ G+ +Q +R  ALQ  R G+ R  +ATD+AARGID+ +
Sbjct: 254 TKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDN 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  VI+ EL +  E  +HR GRT RAG+ G+S+ +   + +R
Sbjct: 314 VSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERR 355


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + RD++ G ++V GT
Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIRDIERGCNVVCGT 342

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 343 PGRLLDMIGRGK-VGVSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEDRQTLMFS 401

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   ++++L+  G +
Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 461

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVMVATSVAA 521

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 561


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 198/347 (57%), Gaps = 14/347 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E  +V  T VQE  +   ++ +D++V ++TGSGKT+AF + +   L          S
Sbjct: 18  ALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFENL---------NS 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ + PTRELA QV R    +    G    V  GG  + R+   L+ GA +V+GTPG
Sbjct: 69  GLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLK-GASMVIGTPG 127

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +R   LN++ ++  VLDEAD MLD+GF DDI++IL  +PK ++M++FSAT+ P I
Sbjct: 128 RVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEI 187

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+ Y K+  ++ ++ +     ++    V V   ++   + ++L     K  ++FC+T
Sbjct: 188 ISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLISERGK-YLIFCNT 246

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R       ++L ++ F+  AL G++ Q  R+  +   + G+  + ++TDVAARGID+  +
Sbjct: 247 RRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVSTDVAARGIDVHGI 306

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357
             V++ ++   P++ +HR GRTGR    G ++ FV  ++ +  RR E
Sbjct: 307 THVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353


>gi|182436152|ref|YP_001823871.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464668|dbj|BAG19188.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 731

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/323 (36%), Positives = 178/323 (55%), Gaps = 16/323 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL L   +    D    R  P     AP AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L        V V    GG +   +   L+ G  ++VGTPGRL D    + L++SH++ 
Sbjct: 71  NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRG 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+ +LA+ Y      +N  S
Sbjct: 131 LVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATS 190

Query: 212 ENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
            + + + +       YRA  +   D+   +  IL+  G   A++FC T+ + +   + L 
Sbjct: 191 PDDEGTTVKNTVQHVYRAHNM---DKPEMLARILQAEGRGLAMIFCRTKRTAADIAEQLE 247

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  V++ +   + 
Sbjct: 248 KRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDE 307

Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348
           +  LHR GRTGRAG KG ++ ++
Sbjct: 308 KTYLHRIGRTGRAGAKGTAITLV 330


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 209/368 (56%), Gaps = 13/368 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+ + T++QE  +   L  +DV+  A TGSGKT++F    AS +L  +++    
Sbjct: 42  KSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSF----ASGILQNSEK---G 94

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L        + +A   GGV ++ + ++L+N A +VVGTP
Sbjct: 95  KGIQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQIKELKN-AEVVVGTP 153

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    + ++++K +VLDEAD M D+GF+ D+E I+   P+ R+ L+FSATI+  
Sbjct: 154 GRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQNRQTLLFSATITKD 213

Query: 193 ITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I  L++ Y ++ VRV+  S  + ++ + + Y+   V    + + +V +L+   +   +VF
Sbjct: 214 IVRLSRKYMENPVRVSTESYIDPQKLNQVVYK---VQDDMKLSLLVYLLQNEKSNLGMVF 270

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+ +  +  K L +     VA+ G L+Q ER+  L+    G   V + TDVA RG+D+
Sbjct: 271 CNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVLVCTDVAGRGLDI 330

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V + ++    +  +HR GRT RAG +G ++ ++ +N       + ++ +V +  +
Sbjct: 331 QGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMSVLKDNDVDIKEQ 390

Query: 371 PAPSVEAI 378
             P+++ I
Sbjct: 391 ALPALKKI 398


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/347 (36%), Positives = 185/347 (53%), Gaps = 15/347 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-------LAEN 66
           AL++ G     ++Q   L   L   D++  A+TG GKT+ FG+ L   L       + E 
Sbjct: 59  ALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQRLSHDKAVTVDEK 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +     AP A+ + PTREL VQV R+L  L    G+ V    GG +   + + LQ G  
Sbjct: 119 GKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRAYEPQIKALQAGVD 178

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D      L +  +K +VLDEADEMLDLGF  D+E +LD  P  ++ ++FS
Sbjct: 179 LVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVLDLVPTVKQTMLFS 238

Query: 187 ATISPAITTLAKNYQKDA--VRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241
           AT+   I TLA+ +      +R   A+E   HS      YRA  +   D+   +  +L+ 
Sbjct: 239 ATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTTRQFVYRAHAL---DKVEMLARVLQA 295

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    +VF  T+ + ++  + L E  F   A+ G+L Q  R  AL+  R G+  V +AT
Sbjct: 296 RGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFRAGKVDVLVAT 355

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+ D+  VI+ +     +  +HR GRTGRAG+ G +V  I
Sbjct: 356 DVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFI 402


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 11/333 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   L   L  +D+L  A+TGSGKT AF L +    LA+         PLAL 
Sbjct: 130 YTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPMIQHCLAQPP-IRRGDGPLALV 188

Query: 80  IAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +APTRELA Q+ +E++ +  +  G   ++ +GG +++ +R +L+ G  IVV TPGR  DH
Sbjct: 189 LAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPGRFIDH 248

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++    ++S +  VVLDEAD MLD+GF   I  ++ S PKK + L+FSAT+   I  LA+
Sbjct: 249 LQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEIEALAQ 308

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249
            Y    VRV +   +   +++      +   ++ ++++ +L    +++          IV
Sbjct: 309 EYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVDEHSQSLDSNQPPPLTIV 368

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +A     T  L E   +  AL G  SQ ER  AL+  R G   + +ATDVA+RG+D
Sbjct: 369 FVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVASRGLD 428

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  VI+ +L    E+ +HR GRTGRAG  G
Sbjct: 429 VTGVAHVINLDLPKTMEDYVHRIGRTGRAGASG 461


>gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct]
 gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 441

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 186/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGR+G++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLV 347


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E           AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYE------LLECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV +   PA
Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVVIEELPA 407


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 205/368 (55%), Gaps = 10/368 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+  +GY+  T +Q  ++   L  +D+L  AQTG+GKT AF L +   +LA     +  
Sbjct: 14  KAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE-ILARGK--AHR 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA+QVG  ++    +  +   V  GGV+V+ +   L+ G  I+V TP
Sbjct: 71  RHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDRLKRGVDILVATP 130

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D     + + +S ++ +V DEAD MLDLGF D+I  IL+  P+ RR ++FSAT + 
Sbjct: 131 GRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQDRRTMLFSATYTR 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    K   ++ +         I  +  LV  S++   +++++     +  +VF 
Sbjct: 191 QIRDLADKMLKTPEQIEVTPNTTVAESIVQKVHLVEKSNKRELLIHLITRSDWRQVLVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++  + LA+      AL G  SQ  R+  LQ  ++G  R+ +ATDVAARG+D+ 
Sbjct: 251 RTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRILVATDVAARGLDIT 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L  V++ ++ S  E+ +HR GRTGRAG +G++V ++ +      E++F ++  S++ + 
Sbjct: 311 GLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKE-----EKVFLKSVESLLEQK 365

Query: 372 APSVEAIR 379
            P VE ++
Sbjct: 366 IP-VETVK 372


>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 441

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 185/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS + +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 181/327 (55%), Gaps = 1/327 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 41  GMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 100 ILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA 
Sbjct: 160 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQTALFSATMPKEIASLAG 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +  +D VRV +A +    ++I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 220 SLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKHGAD 279

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    ++V A+ G  SQ  R  AL   RDG  R+ IATD+AARGID+P +  V++
Sbjct: 280 AVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVN 339

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L   PE  +HR GRTGR G  G S+
Sbjct: 340 YDLPDEPETYVHRIGRTGRNGASGASI 366


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 5/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +Q+  +   L  +D++  AQTG+GKT AFGL L   LLAE  R +P  
Sbjct: 16  AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAPKG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL  Q+ + L      T + V   +GGVS++ + + +  G  I+V TPG
Sbjct: 76  T-RALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++     +VLDEAD+MLDLGF   +  I     K R+ L+FSAT+   I
Sbjct: 135 RLLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA++Y  D  RV ++   R    +  +   +    +   ++++L       ++VFC T
Sbjct: 195 NELAQSYLTDPARVEVSPVGRTADKVRQKVHFMDSKAKTGFLIDVLSDQPDDMSLVFCRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + +A+      ++ G  SQ +R  A++ +R G  +V +ATDVAARGID+P +
Sbjct: 255 KHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDIPGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
             V + EL    E  +HR GRT RAG  G +V    P+ +   R+ E+L    ++ V   
Sbjct: 315 SHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLI-GIDIEVASG 373

Query: 371 PAPSVEAIR 379
            AP + A +
Sbjct: 374 EAPPLSAAK 382


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 198/370 (53%), Gaps = 9/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L       +
Sbjct: 12  IVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHA 71

Query: 71  PASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            ASA  P+ AL + PTRELA QV   +        +  AV  GGV ++ + + L++G  I
Sbjct: 72  SASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKHGVDI 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  +L   PK R+ L+FSA
Sbjct: 132 LVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNRQNLLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA         + +A  N     I+ +   V    +   + ++++ +     
Sbjct: 192 TFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLAHLIKTNNWSQV 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   ++  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARG
Sbjct: 252 LVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDIAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR--- 361
           ID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +M +  E+L +   
Sbjct: 312 IDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDMLKDIEKLIKRKL 371

Query: 362 EANVSVVWEP 371
            + V V +EP
Sbjct: 372 PSEVIVGFEP 381


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 193/367 (52%), Gaps = 6/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   LL          
Sbjct: 15  AVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMPPAPGGKR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  IVV TPG
Sbjct: 75  VVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +       + +A  N     +  +   V    +   + ++++ H     +VF  T
Sbjct: 195 KALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIKQHNWFQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+  L
Sbjct: 255 KHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREA---NVSV 367
             V++ +L + PE+ +HR GRTGRAG  G +V  V    +Q  +  E+L + A    V  
Sbjct: 315 PHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRAVPQEVIA 374

Query: 368 VWEPAPS 374
            +EP P+
Sbjct: 375 GYEPDPN 381


>gi|297621628|ref|YP_003709765.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
 gi|297376929|gb|ADI38759.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
          Length = 395

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 7/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E+L E  Y+  + +Q   +   L ++DV+  AQTGSGKT A  + L   +    D
Sbjct: 15  PKII-ESLREMKYLEPSEIQTKAIPEILNKRDVVALAQTGSGKTAACAIPLCHMVDTSKD 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 A  AL I PTRELA+Q   E + +  K GV      GG     +   + +  H+
Sbjct: 74  ------AIQALVIVPTRELALQYATETQKIGKKRGVHAFAIYGGEDADIQEAKIGHRVHV 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL D I  + +++S +  + LDEADEML +GF +D+EFI++   ++ ++L+FSA
Sbjct: 128 LIATPGRLIDFIYSRRIDLSQVFILALDEADEMLSMGFYEDLEFIINCLVQEHQILLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +A+ + KD V + +  + +  S I++R +      RD +++ +L       +
Sbjct: 188 TMPKEIRRIAEGHMKDPVDILLTQKKQGPSSIEHRFLYCRPDQRDASLIQLLNECQPVQS 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  TR  V    K L + +  V  L G LSQ  R    +  R G+ +  +ATDVAARG
Sbjct: 248 IIFGRTRFQVESLAKSLQKSVKGVDFLHGALSQDVRRIVTRKFRGGKIQHLVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D  ++  V   E+S +P+  +HRSGRTGR  ++GM V ++
Sbjct: 308 LDFSEVSHVFMYEMSDDPDIYVHRSGRTGRFDKQGMVVTLV 348


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 199/373 (53%), Gaps = 13/373 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++   Y   T VQ  ++   + ++D++V +QTGSGKT AFG+ +   +  E  +  
Sbjct: 15  IHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIPICEMMNWEERK-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELAVQV  ++  +     +      G     +++ +L+   H+VVG
Sbjct: 73  ----PQALILTPTRELAVQVREDIANIGRFKLIKALAVYGKEPFAKQKEELKQRNHVVVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + L +  +K ++LDEADEML++GF +D+E I+ + P  R  ++FSAT+ 
Sbjct: 129 TPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPADRVTMVFSATLP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L   Y ++   + IAS     + I++  + V    +   + +I       + I+F
Sbjct: 189 KDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNPKGKLALLKDITVVENPDSCIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V      L    +    L G L Q++R + +   + G  R  +ATDVAARGID+
Sbjct: 249 CNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYLVATDVAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            ++ LVI+ ++    E  +HR+GRTGR+G KG ++ FV P + +      + +A    + 
Sbjct: 309 DNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGK------YLKAIEKYIG 362

Query: 370 EPAPSVEAIRERD 382
              P +EA  E+D
Sbjct: 363 FSIPVMEAPSEKD 375


>gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
 gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
          Length = 496

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL
Sbjct: 110 FKLAPELM-HAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQLL 168

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + 
Sbjct: 169 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKH 226

Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 227 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 286

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  D   V I +EN   ++++     VA +D+   + N
Sbjct: 287 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAGADKYKLLYN 346

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV
Sbjct: 347 LVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 406

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 407 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 454


>gi|119718785|ref|YP_925750.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539446|gb|ABL84063.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 507

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 186/360 (51%), Gaps = 3/360 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L++RG V  T +Q A L   L  +DVL   +TGSGKT AF L L + L A 
Sbjct: 14  GVPASLAAVLADRGIVQPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVARLTAS 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  P AL +APTREL  Q+   L+ L    G+      GGV  + + + L+ GA
Sbjct: 74  G-RPAQARKPRALVLAPTRELVNQIEEALKPLARTAGLTTQTVFGGVGQNPQVQGLRRGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+  PGRL D I     ++S ++  VLDEAD M DLGF   +  I+D +P+  + L+F
Sbjct: 133 DIVLACPGRLEDLIGQGHCDLSQVEITVLDEADHMADLGFLPGVRRIMDRTPRDGQRLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L K + ++ V     S     + +D+  + VA   R   +V++    G  
Sbjct: 193 SATLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVLHVAREHRVPVLVDLTSAPG-- 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + L +     V L G LSQ  R+  +     GRA   +ATD+AA
Sbjct: 251 RTVVFTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLVATDIAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+HA+     +  LHRSGRT RAG +G  + ++  +  R    L R A +
Sbjct: 311 RGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGARGTVITLMTDDQVRDVRDLTRAAGI 370


>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 434

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 194/373 (52%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +   L     +  
Sbjct: 18  ILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQRLNDSPIQMK 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V 
Sbjct: 78  GRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L+  P KR+ L+FSAT S
Sbjct: 138 TPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFS 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA    +D V V +A  N     I+     V    +   +  ++     +  +VF
Sbjct: 198 DDIKSLASKLLRDPVSVEVARRNSASEQIEQLVHFVDKKRKGELLSFLIGSRNWQQVLVF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +      A+ G  SQ  R+ AL   +DGR RV +ATD+AARG+D+
Sbjct: 258 TRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLVATDIAARGLDI 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVS 366
             L  V++ EL +  E+ +HR GRTGRA   G +   V V    + +  ERL  RE    
Sbjct: 318 DQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIERLLKREIPRM 377

Query: 367 VV--WEPAPSVEA 377
            +  +EP P+++A
Sbjct: 378 AIPGYEPDPTIKA 390


>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 419

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 186/340 (54%), Gaps = 3/340 (0%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAP 82
           T VQ+  +   L  +DVL  AQTG+GKT AFGL +   LL +E  R   ++  LAL + P
Sbjct: 27  TEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQRLLESETTRDIQSNDVLALVLVP 86

Query: 83  TRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV   +  LYA+  ++ V    GG S++ + R+L  G  I++ TPGRL DH+  
Sbjct: 87  TRELAQQVFDNIT-LYAQDTIIKVVTAYGGTSMNVQTRNLDQGCDILIATPGRLLDHLFC 145

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +N++  + +VLDEAD MLD+GF  DI+ IL    ++R+ + FSAT    I T+A    
Sbjct: 146 KNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEERQTMFFSATFDKRIKTIAYKML 205

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            + V V +   N     +      V    +   +  ++     +  +VF  T+       
Sbjct: 206 SEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLVFTKTKQGSDALA 265

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  LE V++ ++
Sbjct: 266 KELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLDIQQLEQVVNFDM 325

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
               E+ +HR GRTGRAG++G +V ++ ++ +   E + R
Sbjct: 326 PYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLEAIER 365


>gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
 gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
          Length = 532

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/348 (35%), Positives = 190/348 (54%), Gaps = 8/348 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+   GY   T +Q   +   L  +DV+  AQTG+GKT AF L + S  L+E  
Sbjct: 10  PKVLA-AVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMIS--LSEKG 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R + A  P  L + PTRELA QV +  E       + VA+ IGG S+ ++ + L  GA +
Sbjct: 67  R-ARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMKILDRGADV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSA
Sbjct: 126 LIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGA 244
           T+ P I  LA  + ++ V+V +A+       ++ + V     D   R      I      
Sbjct: 186 TMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRDVIDSQDNI 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAI+FC+ +  V+   + + +  + V +L G++ Q  R   L   RD      +A+DVA
Sbjct: 246 KNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEITHLVASDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           ARG+D+PD+  V + ++  +P++ +HR GR GRAGR G +  FV P +
Sbjct: 306 ARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPAD 353


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 179/340 (52%), Gaps = 2/340 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G  +  ++QE  L   L   D++  A+TG GKT  FG+ L   +    D   
Sbjct: 19  ITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLDRVFDSADIEE 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELAVQVG +LE       + V    GG     +   L+ G  +VVG
Sbjct: 79  IDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDALETGVDVVVG 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE I+ +   K + ++FSAT+ 
Sbjct: 139 TPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKHQTMLFSATMP 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAI 248
             I TLA+++    V +   S +   +    R ++      D++     IL+  G    I
Sbjct: 199 GPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARILQARGRGKTI 258

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + +ATDVAARGI
Sbjct: 259 IFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDILVATDVAARGI 318

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++
Sbjct: 319 DIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLV 358


>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 455

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 192/338 (56%), Gaps = 9/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G+   T +Q   +   L  KD++  A+TGSGKT AF + +   LL +  R     
Sbjct: 55  ACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRL---- 110

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              +L +APTREL++Q+  +L  L  + G+ V + +GG+ +  +   L    HI+VG+PG
Sbjct: 111 --FSLILAPTRELSLQIKEQLISL--EIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPG 166

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           R+ DH++  KG ++  +K +VLDEAD++L   F D +  I+ S PK +   ++SAT++  
Sbjct: 167 RIADHLQNTKGFSLETIKYLVLDEADKLLSADFDDSLNKIIISLPKDKVTYLYSATMTSK 226

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT L K      +++N+ ++   +  +  + +L+ L  +   +  IL  +     +VFC+
Sbjct: 227 ITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCN 286

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T  +  + T  L    F+ V L G+LSQ +R N+L   + G   + + TDV +RGID+P 
Sbjct: 287 TCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNILVVTDVGSRGIDIPF 346

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++LVI+ ++ +  ++ +HR GRT RAG+ G+S+ +I Q
Sbjct: 347 VDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQ 384


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 19/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70
           +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L      +
Sbjct: 319 KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEEN 378

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +V+ 
Sbjct: 379 EAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 438

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179
           TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P             
Sbjct: 439 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 498

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++  S++  
Sbjct: 499 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMF 558

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+  R  
Sbjct: 559 KLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTK 618

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 619 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 670


>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 484

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 11/370 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +     T  A+N   
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYADNR-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 72  GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 132 ATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371

Query: 366 SVV--WEPAP 373
            V+  +EP P
Sbjct: 372 EVIAGFEPDP 381


>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 446

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 198/367 (53%), Gaps = 6/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   L+A +     A 
Sbjct: 15  ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        V  AV  GGV +  +   L+ G  +++  PG
Sbjct: 74  KPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R+ L+FSAT +  
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +      V +AS N     I +R   V +S +   ++++L     +  +VF  
Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLLAQDSREQTLVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368
           L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q    + R+  RL  R+ ++  V
Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373

Query: 369 WEPAPSV 375
            +  P V
Sbjct: 374 PDFEPQV 380


>gi|327325572|gb|EGE67371.1| ATP-dependent RNA helicase [Propionibacterium acnes HL103PA1]
          Length = 491

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 193/350 (55%), Gaps = 13/350 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDR 68
            I + L   GY   + +QE  +   L  +D++  AQTG+GKT AF L L   + L  N  
Sbjct: 22  TILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLDKIDLGIN-- 79

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126
                 P  L + PTRELA+QV   ++  YA+   G  V    GG S   + R L+ G H
Sbjct: 80  -----MPQLLILTPTRELAIQVSEAVQT-YARGMKGFHVLPIYGGQSYDIQLRPLKRGVH 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +VGTPGR+ DHI+   L + HLK+ VLDEADEML +GF DDI++I+   P++R++ +FS
Sbjct: 134 AIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT+   I  +A+ +      V I ++    + I  +  +V  LS +  A+  IL      
Sbjct: 194 ATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKLEALTRILEVTTFD 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L+   F   A++G++ Q +R   +   + G+  + IATDVAA
Sbjct: 254 AMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILIATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +  N +RR
Sbjct: 314 RGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFV-SNRERR 362


>gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  R H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGRPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
 gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
          Length = 493

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 198/353 (56%), Gaps = 10/353 (2%)

Query: 2   KIFENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++  V  + +A  E G+   T +Q+  +   L+++D++  A+TGSGKT AF L + 
Sbjct: 65  KTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPIL 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P     AL +APTRELA Q+ +  E L +   +  A+ +GG+ + ++  
Sbjct: 125 QALL---DKPQPL---FALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAI 178

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH+ + KG ++ +L+ +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 179 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPR 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++V+I+S   Q  S +    V +  + +D  ++ 
Sbjct: 239 ERRTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIY 298

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  I+F  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 299 LCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDI 358

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +ATDVAARG+D+P+++ V++ +L  + +  +HR GRT RAGR G ++  + Q
Sbjct: 359 LVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQ 411


>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 534

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 3/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+ E GY   + +Q   L   L   D +  AQTG+GKT AF +   + LL   
Sbjct: 34  LPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITDLLEHR 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125
                   P AL +APTRELA+Q+  + + L   + + VA  +GG+   ++++ L +   
Sbjct: 94  LEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQLHEQRT 153

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I+V TPGRL D +  K + +  ++ +++DEAD MLD+GF  DI+ I+ ++P+   R+ L
Sbjct: 154 DILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTENRQTL 213

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA+ +  D VRV +  + +   D++    LV+  ++   +  I+R   
Sbjct: 214 LFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSSEEKYPVLRRIVRQDE 273

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   +VF + R  V    + L +       LSG++ Q +R   L   ++G+  V +ATDV
Sbjct: 274 ADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGKFEVLVATDV 333

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A RGI +  +  VI+  L  +PE+ +HR GRTGRAG+KG+S+
Sbjct: 334 AGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSI 375


>gi|314964947|gb|EFT09046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315093752|gb|EFT65728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
          Length = 491

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
 gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
          Length = 483

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 15/377 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I  AL   GY   T +Q  ++   L  ++V   ++TG+GKT AFG+ L   ++ E +
Sbjct: 17  PEII-HALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEEN 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + P+RELAVQV  EL  +  +  + V    GG  + ++ R ++  +HI
Sbjct: 76  ------LPQALVLEPSRELAVQVSNELFHIGRRKRLKVPAVFGGFPIDKQMRTIKQKSHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D I+ + L ++ ++ +V+DEAD MLD+GF ++++ I+   PK  R+L+FSA
Sbjct: 130 VVGTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   +  L   Y  DAV +     A E    S + YRA      ++ + +   L     
Sbjct: 190 TLDEKVRLLVDEYMADAVMIAPEPDAEEEPAISQVVYRA---DPEEKYDLLKRTLILENP 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC TR  V+   + L         + GE+ Q+ER   +   R G  R  IATDVA
Sbjct: 247 ESCMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FRE 362
           ARGID   ++LV++ +     E  +HR GRTGR G  G +V ++ ++ +R    +  +  
Sbjct: 307 ARGIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMG 366

Query: 363 ANVSVVWEPAPSVEAIR 379
             +SV   P P  EA +
Sbjct: 367 RELSVTTCPEPDEEATK 383


>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
 gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
          Length = 480

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 198/371 (53%), Gaps = 7/371 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP 71
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   L     +  S 
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYTEHRSA 73

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV T
Sbjct: 74  KRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S 
Sbjct: 134 PGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSD 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +       + +A  N     +  +   V    +   + +++R H     +VF 
Sbjct: 194 EIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID+ 
Sbjct: 254 RTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V
Sbjct: 314 QLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPREV 373

Query: 368 V--WEPAPSVE 376
           +  +EP P+ +
Sbjct: 374 IAGFEPDPNAK 384


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 193/343 (56%), Gaps = 6/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  +I +A+++ GY + T +QE  +   L   DVL SAQTG+GKT AF L     L + 
Sbjct: 7   NLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPALHRLASP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
           +   S    P  L + PTRELA+QV  E    Y K      V   +GG+    + + L  
Sbjct: 67  SQVRS--RGPRVLVLTPTRELALQVS-EATAKYGKYLPRAKVVSILGGMPYPLQNKLLSQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DHI+   ++ S L+ +VLDEAD MLD+GF +D+E I  ++P  R+ L
Sbjct: 124 VVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPATRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242
           +FSAT+  A+  +A        R+ +A+   + ++I+ R   V  +S ++  + ++LR  
Sbjct: 184 LFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRLHYVDDISHKNQLLDHLLRDI 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K AIVF +T+         L+       AL G++SQ++R+  L  +R G  RV +ATD
Sbjct: 244 ELKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRVLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 304 VAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAV 346


>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
          Length = 2578

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 194/353 (54%), Gaps = 13/353 (3%)

Query: 5    ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL- 63
            + + +V+ +A  + GY   T VQEA + P L  KD++  A+TGSGKT AF L +  +L+ 
Sbjct: 2159 QGLEEVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLIN 2218

Query: 64   --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                  RF       AL +APTRELA Q+  E + L A  G+  A+ +GG+S+ +++  L
Sbjct: 2219 ARPRERRFH------ALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRL 2272

Query: 122  QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                H+++ TPGR+  H+ R  G  ++++K ++LDEAD ML   F  +I+ +L   PK+R
Sbjct: 2273 SQNPHVLIATPGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRR 2332

Query: 181  RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
               +FSAT +  +  L     ++ V + I  + +    +D   V + L  ++  +V  L+
Sbjct: 2333 TNFLFSATSNDKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVWFLQ 2392

Query: 241  YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              G +   + I+FC T+ +  +   +L +   +   L G +SQ++R  AL   +  +  V
Sbjct: 2393 RQGLQADSSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNV 2452

Query: 298  CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             + T+V ARG+D+  +ELVI+ +L    +  LHR GRT RAGR G +V  + Q
Sbjct: 2453 LVCTNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQ 2505


>gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49]
          Length = 391

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 162/276 (58%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G  I++ TPGRL DH+
Sbjct: 1   LTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHV 60

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+FSAT SP I  LA  
Sbjct: 61  QQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLAST 120

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           Y ++   + +A  N  ++++      VA  D+  A+V +LR  G K  IVFC+++   SR
Sbjct: 121 YLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASR 180

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L        A+ G+ SQ ER  AL   + G     +ATDVAARG+D+ +L  VI+ 
Sbjct: 181 LARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINF 240

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +L  N E+ +HR GRTGRAG  G ++ +   N +++
Sbjct: 241 DLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQ 276


>gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619]
 gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 483

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 185/338 (54%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A+ + G+   T +Q  +L   LR KD +  AQTG+GKT AF +++ S L       +R+ 
Sbjct: 108 AIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 166

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 167 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKTLEARHCDILV 225

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 226 ATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 285

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  +  +  
Sbjct: 286 TFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAGSDKYKLLYNLVTQNKWERV 345

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA RG
Sbjct: 346 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 405

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 406 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 443


>gi|126642301|ref|YP_001085285.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ATCC
           17978]
          Length = 358

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 190/329 (57%), Gaps = 8/329 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSPASAPLALA 79
           +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL    +  RF     P AL 
Sbjct: 1   MTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNNPVQEQRFR--GEPRALI 58

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDH 138
           +APTRELA+Q+  + + L   + + +   +GGV   ++++ L  N   I+V TPGRL D 
Sbjct: 59  LAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMVATPGRLIDF 118

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196
           +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  R+ LMFSAT S  +  L
Sbjct: 119 VEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSATFSYDVLNL 178

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+ +  + V V I  E + ++D++ R  +VA  D+   + +ILR       ++F + R  
Sbjct: 179 ARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDILREEPIDKVMIFANRRDQ 238

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R    L +  ++V  LSGE++Q +R   L+  + G+  + IATDVA RGI +  +  V
Sbjct: 239 VRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMIATDVAGRGIHVDGVSHV 298

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 299 VNFTLPEQSDDYVHRIGRTGRAGAQGVSI 327


>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 434

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 192/343 (55%), Gaps = 8/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I ++L+  G+   T VQ+  + P L  +DV+V ++TGSGKT AF + + + L   
Sbjct: 6   NIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINNL--- 62

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +  P A+ I PTRELA+QV    + +    G+      GG S++ +   ++ G 
Sbjct: 63  ----KKSHYPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAGV 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I+VGTPGR+ D I+   L    +K +VLDE D MLD+GF DD+++IL   P++++ + F
Sbjct: 119 NIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMFF 178

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  +   Y K+ + +NI S+      I++   +  ++D+   ++  +     K
Sbjct: 179 SATIPSEIRAVTNKYTKNPIIINIDSKEVTVDTIEHYYSIARVADKFLTLLAYIDTKKPK 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVFC T+ +  R   +L +     V + G LSQ  R ++L + + G   + IAT+VA+
Sbjct: 239 KSIVFCRTQINAERIHTILRKVGIPAVLMHGGLSQSRREHSLSLFKSG-TEMLIATNVAS 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ ++  +I+ +   +P+  +HR GRT R G+ G +  ++
Sbjct: 298 RGLDIDNVSDIINFDAEEDPKAYVHRVGRTARMGKSGRAFTIL 340


>gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 469

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/351 (35%), Positives = 190/351 (54%), Gaps = 7/351 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ +  AL+ +G      +Q A +   L  +DVL   QTGSGKT+AFGL L + L A+
Sbjct: 23  GLPQPLVRALARQGITAPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLLARL-AD 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R  P   P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G 
Sbjct: 82  GERARPRH-PRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISALRRGV 140

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 141 EVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQRLLF 200

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  + A      + +D+  +L+   D+ + + +I    G  
Sbjct: 201 SATLDGDVDALVRRFMTDPVTHSTAPPTAAVTTMDHHLLLIPPHDKFSVVASIAAREG-- 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAA
Sbjct: 259 RTMVFARTQLGVDRLVQQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRMNVLVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355
           RGI +  + LV+H +   +P++ LHR+GRT RAG  G ++   +P+  QRR
Sbjct: 319 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGAVATLALPK--QRR 367


>gi|67468731|ref|XP_650379.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56466997|gb|EAL44993.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 542

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 213/394 (54%), Gaps = 7/394 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL E GY  +T++Q   +   L  KD++  A+TGSGKT+AF + +   L   
Sbjct: 87  NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   +   A+ I+PTRELA+Q    LE + A +     + IGG S  +E   L+ GA
Sbjct: 145 KIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 204

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DHI   K     +LK +V+DEAD ++++GF +++  IL+  PK R+ ++
Sbjct: 205 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 264

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT S  +  +A    K  V +N+ S++     S ++   VL+   DR   +   LR +
Sbjct: 265 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLIEAKDRFRLLYTFLRKN 324

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  +V  ++ +L      V AL G+L Q +R+         +  + I TD
Sbjct: 325 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 384

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P ++ +I  +L  +P++ +HR GRT RA  KG ++  +     R  E L  E
Sbjct: 385 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEIRILEYLKGE 444

Query: 363 ANVSVVWE-PAPSVEAIRERDAQRILQDPLFLDS 395
                 +E P   +  I +R+ +++++   +L++
Sbjct: 445 KIPLTQYEVPEKKIANI-QRELEKLVEKNYYLNT 477


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/331 (36%), Positives = 182/331 (54%), Gaps = 3/331 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q I  A+++ GY   T +Q   + P L  +D+L  AQTG+GKT AF L L   L A+
Sbjct: 8   DLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPLLHRL-AD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   S    PLAL +APTRELA Q+G           +   V  GGVS+ R+ + L  G 
Sbjct: 67  NAGKSHPRQPLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQIQTLARGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL D +    L +  ++  +LDEAD MLD+GF  D++ I  + PK+R+ L+F
Sbjct: 127 HVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPKRRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGA 244
           SAT+  ++  LA +   + VRV  A  +     +D + VL    D+  A++  +L     
Sbjct: 187 SATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVD-QMVLFVPKDKKRALLGELLNDKDM 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+   +R  + L +      A+ G  +Q  R  AL   R GR R  +ATD+A
Sbjct: 246 ARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRALVATDIA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           ARGID+  +  VI+ +L ++PE+ +HR GRT
Sbjct: 306 ARGIDVEGVTHVINFDLPNDPESYVHRIGRT 336


>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 188/341 (55%), Gaps = 7/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA +  G+   + +QE  +   L  +DV+  AQTGSGKT AF L +   L+ +     
Sbjct: 28  LAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQALMDKPQEH- 86

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+  ++E L +  GV   V +GG+ +  +   L    H++VG
Sbjct: 87  -----FALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIALAKRPHVLVG 141

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+   KG ++  LK +VLDEAD++LD+ F  +I+ IL   P++RR  +FSAT+
Sbjct: 142 TPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRERRTQLFSATM 201

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +      V++ +A +      +  + V +    +D  +  ++        ++
Sbjct: 202 TNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAYVINELSGSTFMI 261

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T  S  R   +L    F  V + G +SQ +R  AL   + G   + +ATDVA+RG+D
Sbjct: 262 FTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILVATDVASRGLD 321

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +++VI+ ++  N ++ +HR GRT RAGR G SV ++ Q
Sbjct: 322 IPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQ 362


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 7/342 (2%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+++ +AL+E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 40  FEDLGLGPEIL-KALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIE 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   +   A  P +L +APTRELA QV    +       +  A+ IGG S+  +   
Sbjct: 99  ILAAGRAK---ARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQVAL 155

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D      + ++ +K +V+DEAD MLD+GF  D+E I+   PK R
Sbjct: 156 LDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPKIR 215

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA  +  +   V +++     + +     +V   D+   + +++R
Sbjct: 216 QTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHLIR 275

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               KNA +FC+ +  V    + L +H F VV L G+++Q  R   L+  + G AR+ + 
Sbjct: 276 IEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLMVC 335

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +DVAARGID+  +  V + ++  + E+ +HR GRTGRAG +G
Sbjct: 336 SDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEG 377


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 177/332 (53%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GYV+ T +Q   L P +  +D+   AQTG+GKT AF L +   L  EN R +P  
Sbjct: 54  ALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLENRR-APRR 112

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA Q+                V  GGV++ R+ R +  G  I+V TPG
Sbjct: 113 GCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIAPGVDILVATPG 172

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P +R+ L FSAT+   I
Sbjct: 173 RLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFSATMPKNI 232

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  Y  + V+V +         +D + +      +   + ++LR    +  +VF  T
Sbjct: 233 AGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVLVFTRT 292

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AARGID+  +
Sbjct: 293 KHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGIDVEGV 352

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V++ +L + PE+ +HR GRT RAG +G ++
Sbjct: 353 THVVNYDLPNVPESYVHRIGRTARAGAEGQAI 384


>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
 gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
          Length = 530

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 179/340 (52%), Gaps = 1/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  ALSE  YV  T +Q   +   L  +DV+  AQTG+GKT +F L +   LL    +
Sbjct: 25  EPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHRLLEHRIK 84

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P +  + L ++PTREL+ Q+            +   + IGGV + R+ R L  G  ++
Sbjct: 85  PQPKTTRV-LVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVL 143

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D ++  GL +  ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT
Sbjct: 144 VATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSAT 203

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA +  +D  RV +   +     I+ R + V  S +   +  +L+      A+
Sbjct: 204 MPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVDFSAKPAFLTKLLKDEPINRAL 263

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  +ATD+AARGI
Sbjct: 264 VFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTLVATDIAARGI 323

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  +  VI+ +L + PE  +HR GRT RAG +G ++ ++
Sbjct: 324 DVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLV 363


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 189/354 (53%), Gaps = 27/354 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA------------EN 66
           GY N T VQ   +   +  +D++  AQTGSGKT AF L + S L+               
Sbjct: 75  GYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSGLVVPPAGGGSGYGYGRR 134

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           DR  F   + P AL +APTRELA Q+  E      +TG+ V V  GG  ++ + RDL+ G
Sbjct: 135 DRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVVAYGGTPMYNQLRDLERG 194

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--R 180
             ++V TPGRL D +    +++  +K +V+DEAD MLD+GF   I  I+D  + PKK  R
Sbjct: 195 VDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEPQIRKIVDMMNMPKKSVR 254

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT  P I  LA ++  + + V +         I+ +   V   ++   ++++L+
Sbjct: 255 QTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKLEFVNDGEKRGFLIDLLQ 314

Query: 241 YHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              A  A         +VF  T+         L    F   A+ G+ +QQER +AL+  +
Sbjct: 315 KQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAIHGDRTQQERESALKSFK 374

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            G   + +ATDVA+RG+D+P++  VI+ +L  + E+ +HR GRTGRAG+ G++ 
Sbjct: 375 SGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGIAT 428


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 194/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 5   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 64  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A+   L 
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 236 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 349


>gi|320037892|gb|EFW19828.1| ATP-dependent RNA helicase dbp3 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/317 (37%), Positives = 189/317 (59%), Gaps = 11/317 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AFGL     +L  N+  + +  P AL I PTRELAVQ+  +L   
Sbjct: 134 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 192

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            +   V +A   GG     +RR+++N A +V+ TPGRL D    + +N+S +K +VLDEA
Sbjct: 193 SSVVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 251

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213
           D MLD GF  DI+ I+   P  +KR+ +MF+AT    +  LA ++ K+ V V I  +S+ 
Sbjct: 252 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 311

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268
           R +  I     ++   ++D+ ++ +LR +  GAKN    +VFC  +    R  + +    
Sbjct: 312 RANKRIKQIVEVLQPYEKDSRLLELLRRYQDGAKNNHRILVFCLYKKEAMRVERFIGSKG 371

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F+V  + G++SQ ER  +L+  + G   + +ATDVAARG+D+P ++LV++       E+ 
Sbjct: 372 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 431

Query: 329 LHRSGRTGRAGRKGMSV 345
           +HR GRTGRAG +G+++
Sbjct: 432 VHRIGRTGRAGAEGLAI 448


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|314924108|gb|EFS87939.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314982201|gb|EFT26294.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315103937|gb|EFT75913.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315106118|gb|EFT78094.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
          Length = 491

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
 gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
          Length = 410

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 10/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA +  G+ + +++QE  +   L+ +DV+  AQTGSGKT AF L +   L+       
Sbjct: 10  LAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQALMERPQEH- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+  ++E L +  GV  AV +GG+ +  +   L    HI+VG
Sbjct: 69  -----FALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIALAKRPHILVG 123

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+   KG N+  LK +VLDEAD++LD+ F  +I+ IL   P+ RR  +FSAT+
Sbjct: 124 TPGRVVDHLSNTKGFNLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDRRTQLFSATM 183

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +      V+V +A++      +  + V +    +D  +  +L        ++
Sbjct: 184 TNKVQKLQRACLVRPVKVEVAAKYSTVETLRQQYVFIPAKYKDCYLAYVLNELSGSTFMI 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T  S  R   +L    F  V + G +SQ +R  AL   + G   +  ATDVA+RG+D
Sbjct: 244 FTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAATDVASRGLD 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +++VI+ +   N ++ +HR GRT RAGR G SV ++ Q
Sbjct: 304 IPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQ 341


>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/353 (36%), Positives = 188/353 (53%), Gaps = 11/353 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   GY   T +Q A +   L  +D+L  AQTG+GKT AF L L   L+       P 
Sbjct: 19  QGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLHRLMD-----GPR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL +APTRELA Q+  E+  L   TG+  A   GGV +  + R L+ GA I+V  P
Sbjct: 74  SCVRALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALRGGAEIIVACP 133

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+ RG G  ++ L+ +VLDEAD M D+GF   +  ++   P+  + L+FSAT+ P
Sbjct: 134 GRLLDHLERGTG-TLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQRLLFSATMPP 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA+   +  V + I       + + +    VA   +   + ++LR+H  ++A+VF 
Sbjct: 193 ELRRLAEALLRAPVTLQI-GRTEAAATVSHALYPVAREQKTALLKHLLRHHDIRSALVFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R  + L    F   +L G LSQ +R  AL   R G   V +ATD+AARGID+ 
Sbjct: 252 RTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLVATDIAARGIDVA 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRAERLFR 361
            +  V + ++ +  E   HR GRTGRA R G +  FV P  + + R+ ER  +
Sbjct: 312 RVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQIERALK 364


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/373 (36%), Positives = 200/373 (53%), Gaps = 6/373 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I   LS  G+   T +Q   +   L+  D++  AQTG+GKT AFGL +   L+A+  R
Sbjct: 21  QQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPMIEKLVADGKR 80

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P +   AL +APTREL  Q+   L+    K+ + V V +GGVS++++   L  G  I+
Sbjct: 81  PDPRNI-RALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTEQLARGVDIL 139

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK R+ L+FSAT
Sbjct: 140 VATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSAT 199

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +   I  LA  Y  D V+V +    +    ++     V   D    I+   L  +    +
Sbjct: 200 MPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQSLTNNPDGLS 259

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV +ATDVAARG
Sbjct: 260 LVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRVLVATDVAARG 319

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREAN 364
           ID+P +  V + +L   P+  +HR GRT R GR G+++ F  P  ++  R  E+L     
Sbjct: 320 IDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLM-GIQ 378

Query: 365 VSVVWEPAPSVEA 377
           ++V    APS +A
Sbjct: 379 IAVASGEAPSDQA 391


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 206/377 (54%), Gaps = 12/377 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L   LL  
Sbjct: 27  NLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHKLLNT 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P  A + + + PTRELA QV    E     T +  A+  GG S+  + + L++ A
Sbjct: 87  PKKDEPGVARVVI-LTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIKALKD-A 144

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I+ IL   P  R+ L+F
Sbjct: 145 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHG 243
           SAT   ++  L+K   K+   V +  + R  + ++   V+ ++  DR   +V +++    
Sbjct: 205 SATFDDSVFALSKKLLKNPELVEV--DKRNSAAVEVEQVIYSVDEDRKRELVSHMIGMKN 262

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +ATDV
Sbjct: 263 WRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLVATDV 322

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FR 361
           AARG+D+P L  VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E +    
Sbjct: 323 AARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEIEVLL 382

Query: 362 EANVSVVW----EPAPS 374
           +  ++  W    EP P+
Sbjct: 383 DTRLTPQWLAGYEPDPN 399


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN   +  S    L + PTRELA QV   +          V    GGV +  + + L+ 
Sbjct: 65  -ENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL +H+    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + G+  Q  R  AL+    G  RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 195/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN   +  S    L + PTRELA QV   +          V    GGV +  + + L+ 
Sbjct: 65  -ENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL +H+    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + G+  Q  R  AL+    G  RV +A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 553

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 199/344 (57%), Gaps = 12/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+  A++  GY   + +Q   +   L   D++  AQTG+GKT AF L L S       
Sbjct: 15  PNVLA-AITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS------- 66

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
           R  P+   P  L + PTRELA+QV    E  Y+K   GV V    GG  +  + + L+ G
Sbjct: 67  RIDPSRREPQMLVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRLCDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++
Sbjct: 126 AQILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + K    V IA++ +  + I+   ++V    +  +I  +L     
Sbjct: 186 FSATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVA
Sbjct: 246 DALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+P +  V++ ++  +PE+ +HR GRTGRAGR+G ++ ++
Sbjct: 306 ARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLV 349


>gi|115730751|ref|XP_786504.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
 gi|115943987|ref|XP_001179633.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21a
           [Strongylocentrotus purpuratus]
          Length = 657

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 207/383 (54%), Gaps = 25/383 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I E L  +G   L  +Q     P     DV+  A+TG+GKT++F L L         
Sbjct: 111 PKTI-EKLHAKGVKYLFPIQAQTFKPIDDGFDVIAQARTGTGKTLSFVLPLVEKW----Q 165

Query: 68  RFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           +F   S   P+ LA+APTRELA Q+    E+  A    +   CI GG S   +   ++ G
Sbjct: 166 QFPQKSGRQPIILALAPTRELAKQIS---EYFEAIGPHLSTTCIYGGTSYWPQESAIRRG 222

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPK 178
             +VVGTPGR+ D+IR   L++S LK VVLDE D MLD+GF + +E IL      + +P 
Sbjct: 223 LDVVVGTPGRILDYIRKNTLDLSKLKHVVLDEVDRMLDMGFAESVEEILGAAYKTEEAPN 282

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAI 235
             + L+FSAT+ P +   A  Y +KD  +V++   +R  +   + + A+  +  DR   I
Sbjct: 283 NPQTLLFSATVPPWVYQTAVKYMRKDLKKVDLVGRDRMKTATTVQHLAINCSYFDRPQVI 342

Query: 236 VNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++ +G  +   +VFC T+   +    + ++   +   + G++ Q +R   L+  R+G
Sbjct: 343 SDVIKVYGGLDGRCMVFCETKRDANELA-MSSDVKQETQVMHGDIPQTQREVTLKGFREG 401

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + +  + TDVAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ V    +  +
Sbjct: 402 KFQCLVTTDVAARGLDIPEVDLVIQCNPPRDVDSYIHRSGRTGRAGRNGVCVCFYKRQEE 461

Query: 354 RRAERLFREANVSV--VWEPAPS 374
           R  +++  +A +    V  P PS
Sbjct: 462 RDLQKVEYKAGIKFKRVSAPQPS 484


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 180/333 (54%), Gaps = 1/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +QE  +   L+  DVL  AQTG+GKT +F L L   L     R  P 
Sbjct: 16  KALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPK 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S  + L + PTRELAVQVG+  +       +  A+  GGV +  + + +  G  ++V TP
Sbjct: 76  SCRI-LVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVDVLVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    + +  ++A+VLDEAD MLD+GF   I  I+   PK+R+ ++FSAT+  +
Sbjct: 135 GRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQTVLFSATMPDS 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +     VRV +   +     ID + + V    +   + +IL       A+VF  
Sbjct: 195 IVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILAGKDVGRALVFTR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  ++L +      A+ G  SQ  R  AL   RDGR +  +ATD+AARGID+  
Sbjct: 255 TKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALVATDIAARGIDVDG 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ EL + PE+ +HR GRT RAG  G+++
Sbjct: 315 ITHVINFELPNEPESYVHRIGRTARAGASGIAL 347


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|315444871|ref|YP_004077750.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315263174|gb|ADT99915.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 468

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 188/362 (51%), Gaps = 4/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +AL+ERG      +Q A L   L  +DVL   +TGSGKT+AF + L + L   
Sbjct: 10  GVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAALTGI 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   AS P  L +APTRELA Q+   LE +    G+ V    GGVS  R+   L+ G 
Sbjct: 70  RRQ---ASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D ++ K +++ ++   VLDEAD M DLGF   +  IL ++P+  + L+F
Sbjct: 127 DIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  + V  ++       + + +    V        +V+ L   G  
Sbjct: 187 SATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQL-ASGTG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  K L E     V L G LSQ  R   L     G ARV +ATD+AA
Sbjct: 246 RRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L R+A +
Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRKAGI 365

Query: 366 SV 367
           +V
Sbjct: 366 TV 367


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 19/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70
           +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L      +
Sbjct: 305 KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEEN 364

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +V+ 
Sbjct: 365 EAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIA 424

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179
           TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P             
Sbjct: 425 TPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEEL 484

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++  S++  
Sbjct: 485 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMKESEKMF 544

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+  R  
Sbjct: 545 KLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTK 604

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 605 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 656


>gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 617

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 10/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F ++  P  I ++  + GY   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 69  MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E   +  +   +   C+ GG     +
Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+    ++V   D+   + 
Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L   L   V+A+ G+  Q +R   L   R    
Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P  
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427

Query: 352 MQRRAERLFREANVSV 367
             R    L R AN  V
Sbjct: 428 TIRDLVDLLRRANQEV 443


>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 6/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+SE+GY   + +Q   + P ++  DV+ +AQTG+GKT  F L L   L +      
Sbjct: 12  ILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLHRLASGK---- 67

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           PASA    AL + PTRELA QV   ++       +   V  GGV ++ +   L+ GA I+
Sbjct: 68  PASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMRLRRGADIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  I+   PKKR+ LMFSAT
Sbjct: 128 VATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKRQNLMFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I +LAK    + + ++++  N   + +      V    +   +  ++  H     +
Sbjct: 188 FSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPVDKKKKPELLSQLINTHQWTQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++ T+ L        A+ G  SQ  R+ AL   + G  ++ +ATD+AARG+
Sbjct: 248 VFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQILVATDIAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 308 DIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLV 347


>gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 422

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 192/347 (55%), Gaps = 7/347 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           + +A+ E GY   T VQ+A++   L  +DVL SA+TG+GKT AF L +   L   +    
Sbjct: 12  LQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPILMNLSQIDTQTL 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
           +P     AL + PTRELA+Q+  E  +L Y++   + ++ + GG S++ +R+ L  G  +
Sbjct: 72  TPEQRLRALVMTPTRELAIQI--EQNFLSYSRYLELNSLAVYGGASINPQRKALAQGVDV 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D I    L++SH+  +V+DEAD MLDLGF  DIE +     ++R+ +MFSA
Sbjct: 130 LVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVARQRQTMMFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA+         ++AS     S +     LV    +   +  ++  +  +  
Sbjct: 190 TFSDEVQVLAQKMLNQPAIFHLASSTTA-STVSQEVYLVDKRRKAELLSELIGRNNWQQV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF ST+ +       L     +     G+ SQ  R+ AL+  + G+ R+ IATD+AARG
Sbjct: 249 MVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQLRILIATDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +D+  L LVI+ EL   PE+ +HR GRTGRAG  G ++ FV P   Q
Sbjct: 309 LDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVSPNEQQ 355


>gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 647

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 196/372 (52%), Gaps = 23/372 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY N T VQ   +      +D++  AQTGSGKT AF L + S   ++    S        
Sbjct: 195 GYSNATPVQRYSVAIVTAGRDLMACAQTGSGKTAAFLLPILSQNFSDGATVSDTPTDRRS 254

Query: 75  ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L +APTRELA+Q+  E +    ++ V   V  GG  +  + RDL+ G  ++V T
Sbjct: 255 KILPISLILAPTRELAIQIYEESKKFAYRSWVRPCVAYGGTPISDQLRDLERGCQLLVAT 314

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATI 189
           PGRL D +    ++++ ++ +VLDEAD MLD+GF   I  I+  +  P  R+ LMFSAT 
Sbjct: 315 PGRLVDLMERGRVSLASIRYLVLDEADRMLDMGFEPQIRQIVQQADMPTDRQTLMFSATF 374

Query: 190 SPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAIVNIL 239
              I  LA+++  D V     RV   SEN   +     D+D R+VL+ +   D  I    
Sbjct: 375 PRNIQMLARDFLHDYVFIAVGRVGSTSENITQNIEMVEDVDKRSVLLDILATDAGIAQES 434

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A   +VF  T+         L +  F   A+ G+ +Q+ER  ALQ  R GR  V +
Sbjct: 435 PDPAANLTLVFVETKRGADMLCNFLIDQRFPATAIHGDRTQREREFALQSFRSGRTPVLV 494

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQN--MQRR 355
           AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG   K  + F + QN  + + 
Sbjct: 495 ATAVAARGLDIPNVTHVVNFDLPSDIDDYVHRIGRTGRAGNIGKATAFFNMEQNRGIVKE 554

Query: 356 AERLFREANVSV 367
              + +EAN  +
Sbjct: 555 LVEILQEANQEI 566


>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 555

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 182/336 (54%), Gaps = 3/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L   + R +   
Sbjct: 21  AVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILERL--SHSRATSGK 78

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV + +        +   V  GGV ++ +   L+ G  IVV TP
Sbjct: 79  IPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALRRGVDIVVATP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ + +++S L+ +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S  
Sbjct: 139 GRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQNLLFSATFSDE 198

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA N       + +A  N     +      V    +   + ++++ H     +VF  
Sbjct: 199 IKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHLIKAHNWFQVLVFTR 258

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AARGID+  
Sbjct: 259 TKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLVATDIAARGIDIDQ 318

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 319 LPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLV 354


>gi|319955548|ref|YP_004166815.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424208|gb|ADV51317.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 446

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 185/317 (58%), Gaps = 11/317 (3%)

Query: 37  EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +KD++  A+TG+GKT AFGL L   +  +N+          + +APTREL  Q+   L  
Sbjct: 41  KKDIVALAKTGTGKTAAFGLPLLQLVNTKNNDIQ------VVILAPTRELGQQIYANLVS 94

Query: 97  L--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
              Y+   V+ ++C GG  +  +   L++  H+VV TPGRL D I+ K +NI +   +VL
Sbjct: 95  FAKYSPAIVIASIC-GGTPIKPQIEKLKSATHVVVATPGRLVDLIQQKAINIKNTSYLVL 153

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASEN 213
           DEADEM+    + D++ I+   P++RR L+F+AT+  AI  L +NY  K+ + +    + 
Sbjct: 154 DEADEMVT-ALKQDLDPIVKELPEERRTLLFTATMPGAIKQLVQNYLNKNVMHLEADMDT 212

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             H  I+++ ++V   ++ + +++ L     +  I+FC T+A+V++  K LA + F   A
Sbjct: 213 IGHQGIEHQYIVVEPIEKLDVLLHFLSSREGEQGIIFCKTKAAVNKLAKNLAINKFSSGA 272

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G L+Q  R   +   R+G+ ++ +ATD+A+RGID+ D+  V++  L    +  +HRSG
Sbjct: 273 LHGSLTQVIRDRVMGQFREGQLKILVATDLASRGIDVKDISYVVNYHLPETYDLYVHRSG 332

Query: 334 RTGRAGRKGMSVFVIPQ 350
           RT RAG  G+S+ ++ Q
Sbjct: 333 RTARAGANGLSITILQQ 349


>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 418

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 178/336 (52%), Gaps = 1/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            ++E G+   T VQ+  +   L+  DVL  AQTG+GKT AFGL L   L+    +R   +
Sbjct: 15  TVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESPIERHEES 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTRELA QV   L      T + V V  GG S++ ++ +L  GA I++ TP
Sbjct: 75  KVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGADILIATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K + ++  + +VLDEAD MLD+GF  DI+ IL   P +R+ L FSAT S  
Sbjct: 135 GRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFFSATFSKK 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +A         V +   N     ++     V    +   +  ++     +  +VF  
Sbjct: 195 VREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWQQVLVFTK 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       K L +   +  +++G+ SQ  R  AL+  + G+ R  IATDVAARG+D+  
Sbjct: 255 TKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAARGLDIEQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LE VI+ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 315 LECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLM 350


>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
 gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
          Length = 422

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 12/377 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68
           + ++E G+   T +QE  +   L   D++  AQTG+GKT AFGL +   LLA    E+D 
Sbjct: 14  DTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQQSEHDE 73

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL + PTRELA QV   +      T + VAV  GG S+  + + L++G  
Sbjct: 74  GYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH     +++S ++ +VLDEAD MLD+GF  DI+ I+   P+KR+ L+FS
Sbjct: 134 ILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +  LA +   D   + +  EN     +      V    +   +  ++       
Sbjct: 194 ATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPVDKHRKRELLSYLIGSRNWNQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  +ATDVAAR
Sbjct: 254 VLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRAERLFREAN 364
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G  +S+  I +    RA     +  
Sbjct: 314 GLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIEELLDTR 373

Query: 365 VSVVW----EPAPSVEA 377
           +   W    EP P+++A
Sbjct: 374 LPQEWLEGYEPDPTIKA 390


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|327332290|gb|EGE74026.1| ATP-dependent RNA helicase [Propionibacterium acnes HL097PA1]
          Length = 491

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 393

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 189/345 (54%), Gaps = 4/345 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A++  GY   T +Q   + P L  +DVL  AQTG+GKT +F L L   L  +     
Sbjct: 13  LARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQRLTKDPQPRV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P   P AL + PTRELA Q+   +  L    + +   V +GGV + R+ R +Q G  I+V
Sbjct: 73  PGR-PRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMVQRGLEILV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  K +++  ++ +VLDEAD MLD+GF   ++ I    P+KR+ +MFSAT+
Sbjct: 132 ATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQTVMFSATL 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +T L  +   D VRV +A      + ID R + V  +++   ++++L      + AI
Sbjct: 192 PNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGDARKVERAI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++    L E+  +   + G  SQ  R  AL   + G+ R  +ATD+AARGI
Sbjct: 252 VFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRALVATDIAARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           D+  +  VI+ +L + PE+ +HR GRT RAG  G+++    PQ M
Sbjct: 312 DVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEM 356


>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
          Length = 611

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 214/395 (54%), Gaps = 22/395 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q    N     KDV+  A+TG+GKT+AF + L   L  + D      A
Sbjct: 48  LQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDKRRGRA 107

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA+QV ++ + +  K  + V    GG S + +   +++G  I+VGTPGR
Sbjct: 108 PKILCLAPTRELAIQVSKDFKDMTKK--LSVTCFYGGSSYNPQLDAIRSGIDILVGTPGR 165

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189
           + DH++   L++S LK VVLDE D+MLD+GF + +E IL +S +K      + L+FSAT 
Sbjct: 166 IKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFSATC 225

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y +     V++  +  Q   + +++ A+    S R   I ++++ Y G+ 
Sbjct: 226 PSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSH 285

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+   +  + + A       +L G++ Q++R   L+  R G   V +AT+VA
Sbjct: 286 GRTIVFCETKKDANELS-MNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVA 344

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LV+      + E+ +HRSGRTGRAGR G+ +    +  + +   + ++A 
Sbjct: 345 ARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAG 404

Query: 365 VSVVWEPAPSVEAI---RERDAQRILQDPLFLDSI 396
           ++      P+   I     +DA R      FLDS+
Sbjct: 405 ITFKRVGVPTANDIIKSSSKDAVR------FLDSV 433


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A+   L 
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 190/350 (54%), Gaps = 8/350 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +F  +   + +AL + GY   T +Q   +   L   D+L  A TG+GKT AF + +  
Sbjct: 1   MSLFSKLSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVE 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +  P     AL + PTRELA+QV  ++  L     +   V  GG SV +    
Sbjct: 61  KL----QKGKPDVK--ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDI 114

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQN    I++GTPGR+ D I  K LN+S ++ +VLDE D+MLD+GF +DIE+I+   PK+
Sbjct: 115 LQNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
           R   MFSAT+   I  LAK + K   +           +I+ + + L +  ++ + +++I
Sbjct: 175 RTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  +  ++F  T+        +L +   +  AL G+L+Q++R  AL   + G   + 
Sbjct: 235 IDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IATDVAARG+D+ D+ +VI+  +  +PE  +HR GRTGR G+ G +  +I
Sbjct: 295 IATDVAARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLI 344


>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V   N+ R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|145224540|ref|YP_001135218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217026|gb|ABP46430.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 468

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 188/362 (51%), Gaps = 4/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +AL+ERG      +Q A L   L  +DVL   +TGSGKT+AF + L + L   
Sbjct: 10  GVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVAALTGI 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   AS P  L +APTRELA Q+   LE +    G+ V    GGVS  R+   L+ G 
Sbjct: 70  RRQ---ASRPSGLVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSALRGGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D ++ K +++ ++   VLDEAD M DLGF   +  IL ++P+  + L+F
Sbjct: 127 DIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  + V  ++       + + +    V        +V+ L   G  
Sbjct: 187 SATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHQL-ASGTG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  K L E     V L G LSQ  R   L     G ARV +ATD+AA
Sbjct: 246 RRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L R+A +
Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRKAGI 365

Query: 366 SV 367
           +V
Sbjct: 366 TV 367


>gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 442

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   + + +
Sbjct: 29  ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV   +         + +V  +GG     + R L+ G  +++
Sbjct: 86  IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT 
Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248
             A+  +A+++  +  +V+I  E+   + ID         + ++N ++ +L     K A+
Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAARGI
Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364
           D+  +  VI+ +L    E+ +HR GR GRAGR G++V +   N  R+ E     L R+ +
Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHINRYLKRQMS 382

Query: 365 VSVVWEPAP 373
           VS +    P
Sbjct: 383 VSTIEGLEP 391


>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
          Length = 440

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 198/356 (55%), Gaps = 13/356 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++  P+ + EA    G+     +Q   +   L+ KDV+  AQTGSGKT AF L +
Sbjct: 8   MKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPI 67

Query: 59  ASTLLAENDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              LL        A  P    A  ++PTRELA+Q+  + E L +  GV  AV +GG+ + 
Sbjct: 68  LHALLQ-------APRPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMV 120

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++   +    HI+VGTPGR+ DH++  KG ++S LK +VLDEAD +L+  F + +  IL 
Sbjct: 121 QQSIKIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILG 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++RR  +FSAT++  +  L +   ++ V++  +++      +  +   +    +D  
Sbjct: 181 MIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKRKDCY 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V IL       ++VF  T  +      +L     + + ++G +SQ +R  AL   + G 
Sbjct: 241 LVYILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGD 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q
Sbjct: 301 CNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQ 356


>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 438

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 186/354 (52%), Gaps = 6/354 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ +GY   T +Q   +       D+L  AQTG+GKT AF L +   L  EN       
Sbjct: 15  AIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQRL-GENIPPDKRR 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV  ++     +  +   +  GGV++  +   L  G  IVV TPG
Sbjct: 74  RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     +N+S +K +VLDEAD MLDLGF DDI  + +  P KR+ ++FSAT S +I
Sbjct: 134 RLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKRQTMLFSATYSQSI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252
             LA        R+ +A  N   +D   +AV      R   +++ L   G  N + VF  
Sbjct: 194 KQLADELLDQPRRIEVARRN-IAADAVTQAVYQVEKSRKREMLSFLISKGNWNQVLVFAR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    + T+ L     +  A+    SQ  R+  L   + G  RV +ATDVAARG+D+  
Sbjct: 253 TRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRVLVATDVAARGLDIER 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREA 363
           L  V++ +L   PE+ +HR GRTGRAG  G+++ ++    Q++ +  E+L + A
Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQAIEKLLKYA 366


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 177/337 (52%), Gaps = 1/337 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I   LS  G+   T VQ   +   L  KDVL  AQTG+GKT AFGL +   L+    + 
Sbjct: 13  TILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIIQKLIESEAKR 72

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            P S  + AL + PTRELA QV   L      T + +    GG S++ + R+L+ G  I+
Sbjct: 73  DPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNVQTRNLEQGCDIL 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+  K +++   + +VLDEAD MLD+GF  DI+ IL      R+ L FSAT
Sbjct: 133 IATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRFNAVRQTLFFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  +A   Q + V V +++ N     +      V    +   +  ++     +  +
Sbjct: 193 FDKRIKNIAYKLQSEPVEVQVSASNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVL 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARG+
Sbjct: 253 VFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ +LE V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 313 DIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAV 349


>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
 gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
          Length = 426

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/364 (35%), Positives = 189/364 (51%), Gaps = 7/364 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++GY   T VQ   +   L   DVL  AQTG+GKT  F L +   +   +   S   
Sbjct: 15  AVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPMLQLMHKTHPERSRNH 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGV ++ + + LQ G  I+V TPG
Sbjct: 75  PIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQKLQRGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I     N+ H++  VLDEAD MLD+GF  DI  +L   PKKR+ L+FSAT S  I
Sbjct: 135 RLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKKRQNLLFSATFSEEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  +    V V +A     H  +      V+ + + + + +++R    +  +VF  T
Sbjct: 195 KKLANGFLHAPVYVEVARNETAH-QVTQVVHPVSKAKKRDLLSHLIRQGDWQQVLVFTKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++ T  L       VA+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 254 KHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVRVMVATDIAARGLDIDSL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREANVSVV-- 368
             V++ EL    E+ +HR GRTGRAG  G S+ ++  + ++     ERL ++    VV  
Sbjct: 314 PHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLLVGIERLIKKPIAKVVVP 373

Query: 369 -WEP 371
            +EP
Sbjct: 374 GFEP 377


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 206/377 (54%), Gaps = 18/377 (4%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P ++  A+ E G+   T+VQ A +   L   D++VS+QTGSGKT AF L    
Sbjct: 3   FENLGLAPALL-SAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
            +        PA+  +    L + PTRELA+QV  E    Y +    +  A  +GG+   
Sbjct: 62  RIAQ-----MPANKGVGVQVLVLTPTRELALQV-TEATATYGRKLADLRTATVVGGMPYG 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I+  
Sbjct: 116 AQLKALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVSR 175

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
            P+ R+ L+FSAT+   I  LA    +D  R+ +A    +H++I  +++L A   S +  
Sbjct: 176 LPEDRQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNI-TQSLLYADDASHKMQ 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++LR      AIVF ST+         LA+  F   AL G+++Q++R+  L  ++ G
Sbjct: 235 LLDHVLRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + R+ +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + +
Sbjct: 295 QLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSER 354

Query: 354 RRAERLFREANVSVVWE 370
            +  R+      S+  E
Sbjct: 355 HKVRRIEHYIGQSITPE 371


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 185/332 (55%), Gaps = 10/332 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +   D+L S+QTGSGKT+A+ L L  + +         +   AL + PT
Sbjct: 23  TEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLIDSFIK--------NKTTALILVPT 74

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   L  +     +  AV IGG  + ++   L+    +++GTPGR+ DH+    
Sbjct: 75  RELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQLKKNPKVIIGTPGRIIDHLNRGS 134

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L I  +   VLDE D MLD+G ++ +E I    P+KR++LMFSAT+   I  +++ Y  +
Sbjct: 135 LKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNN 194

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            VR+ + + N+  ++I   ++ V+  ++ +A+   L      + I+F  T+ S  +  K+
Sbjct: 195 PVRITVGATNKAAAEIKQESMHVSDKEKFSALTKQLGNREG-SVIIFVKTKRSADQLAKM 253

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L        A+ G+LSQ++R   +   R    R+ +ATDVAARG+D+P  + VI+ +L  
Sbjct: 254 LKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVINYDLPM 313

Query: 324 NPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 314 CPEDYLHRIGRTGRAGATGHALSFISPDDVIR 345


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 193/351 (54%), Gaps = 15/351 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L      +++
Sbjct: 7   SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L++ D       P  L + PTRELA QV  +L  L A T       +GG + + + + 
Sbjct: 67  RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I  ++  KR
Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKR 179

Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-N 237
           R  LMFSAT+  + I  +A    K+   V I + + +H DI  R  L    D   A++ +
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ ++
Sbjct: 240 LLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 13/359 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L   N          AL
Sbjct: 57  GFEKPSTIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGILQQLDYNNVECQ------AL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG  V +++R LQ G H+VVGTPGR+ D 
Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQRILQAGVHVVVGTPGRVYDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 171 LRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGLFSATMPPEALEITR 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++FC+TR  V
Sbjct: 231 KFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 291 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN--VSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++      M R  ER+  +     + V E  P+
Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAI----NFMVREDERMLHDIQKFYNTVIEELPN 405


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/329 (36%), Positives = 182/329 (55%), Gaps = 7/329 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAI 80
           T VQ+  +   +  +D++  AQTGSGKT AF L + + ++        FS    P AL +
Sbjct: 376 TPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTGMMKNGLTGSAFSDVQEPQALVV 435

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           APTRELA+Q+  +       T +   V  GG SV  + + ++NGAHIVVGTPGRL D I 
Sbjct: 436 APTRELALQIFNDARKFSHGTMLRPVVLYGGTSVGYQLKQVENGAHIVVGTPGRLIDVIN 495

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTL 196
              ++++ LK ++LDEAD MLD+GF  DI+ I+    +P+K  R+ LMFSAT    I  L
Sbjct: 496 KGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHELGTPEKTERQTLMFSATFPEEIQKL 555

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A ++  D + + +       SD+      V    +   + +IL   GA   +VF   + +
Sbjct: 556 AGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQKRQKLCDILSESGADKTLVFVEQKRN 615

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L+E  F   ++ G+  Q+ER  AL+  + G+A + IAT VAARG+D+P+++ V
Sbjct: 616 ADFLASYLSESGFPTTSIHGDRLQREREEALRDFKQGKAPILIATSVAARGLDIPNVKHV 675

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L  + +  +HR GRTGR G  G + 
Sbjct: 676 INYDLPQSIDEYVHRIGRTGRCGNLGKAT 704


>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 438

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 10/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  G+   T +Q+  + P L+ +D++  AQTGSGKT+A+ L L      +    +P +
Sbjct: 28  ALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPET 82

Query: 74  APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
           AP    AL + PTRELA QV   L  L A     + +    GG S++ +   L+ GA IV
Sbjct: 83  APRVLGALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTATGGSSINPQLLALRGGADIV 142

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L +S +  +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT
Sbjct: 143 VATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAELDRILALLPAQRQSVLFSAT 202

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             P I +LAK   +D +R+ I +       I+ RA+ V    R   + ++L+ HG  + +
Sbjct: 203 FPPGIASLAKRRLRDPLRITIVATPDAAPAIEQRAIAVDAGQRTQLLRHLLQEHGWSHVL 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R +  +  + L +       L GELSQ  R   L   +    +V +ATD+A RGI
Sbjct: 263 VFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRERTLYAFKQREVQVLVATDLAGRGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+  L  VI+ +L  +  +  HR GRT RAG  G+++  +    Q
Sbjct: 323 DIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFVSAESQ 367


>gi|119188415|ref|XP_001244814.1| hypothetical protein CIMG_04255 [Coccidioides immitis RS]
 gi|118575174|sp|Q1DZK8|DBP3_COCIM RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 464

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/317 (36%), Positives = 188/317 (59%), Gaps = 11/317 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AFGL     +L  N+  + +  P AL I PTRELAVQ+  +L   
Sbjct: 137 RDLIGVAETGSGKTLAFGLPCLRRVLELNNSET-SCKPCALIITPTRELAVQIYDQLLRF 195

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            +   V +A   GG     +RR+++N A +V+ TPGRL D    + +N+S +K +VLDEA
Sbjct: 196 SSAVDVGIACIYGGSPKDHQRREIRN-ASVVIATPGRLKDFQADQTINLSGVKYLVLDEA 254

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASEN 213
           D MLD GF  DI+ I+   P  +KR+ +MF+AT    +  LA ++ K+ V V I  +S+ 
Sbjct: 255 DRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDI 314

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHL 268
           R +  I     ++   ++D+ ++ +LR +  G KN    +VFC  +    R  + +    
Sbjct: 315 RANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKG 374

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F+V  + G++SQ ER  +L+  + G   + +ATDVAARG+D+P ++LV++       E+ 
Sbjct: 375 FKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDY 434

Query: 329 LHRSGRTGRAGRKGMSV 345
           +HR GRTGRAG +G+++
Sbjct: 435 VHRIGRTGRAGAEGLAI 451


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSV 375
             +EP+P V
Sbjct: 380 KGFEPSPVV 388


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/402 (33%), Positives = 208/402 (51%), Gaps = 16/402 (3%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P +  + + L   G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   
Sbjct: 6   FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65

Query: 62  LLAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
           L        PA  AP AL + PTRELA QV +EL  L      V +    GG     +  
Sbjct: 66  L-------DPARLAPQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GAH+VVGTPGR+ DH+    L++S L  +VLDEAD M+D+GF DDI  I    P K
Sbjct: 119 SLARGAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+  + ++   V + +++   S I+     +   DR +A+  +L
Sbjct: 179 RQTLLFSATYPDNIRKLSARFLRNPAEVKVEAQH-DASRIEQIFYEIDEKDRLDAVARLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +    + + FC+T+       + L        AL+G+L Q+ER   L    +    V +
Sbjct: 238 AHFRPVSTLAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +++ + E  +HR GR+GR  +KG+++ +   +  R A  +
Sbjct: 298 ATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLV 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +     + W    S++      A R L+ P+    IQG +K
Sbjct: 358 EQYQGTPLKWGDIKSLKP----KADRPLRAPMVTLCIQGGKK 395


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 13/345 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L  +  +  T +QE  +       DV+  AQTG+GKT+AF       LL   +  S
Sbjct: 13  IIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAF-------LLPMFENIS 65

Query: 71  P-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P  +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H+V+
Sbjct: 66  PDINAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQIKKLKNNIHLVI 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    LN   LK +VLDEADEML +GF++++  I+D++P+KR+ L FSAT+
Sbjct: 126 ATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPRKRQTLCFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247
           +  +  LA    +D   V I  E     +I  + VL+  +DR     +  IL       A
Sbjct: 186 NSEVKKLAYKNMRDPKLVIIEKEEVTLKNI--KQVLIETTDRRKQEDLCKILDEENPFMA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAARG
Sbjct: 244 IIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +D+  +  V + ++  N E+ +HR GRTGRAG KG + +FV P++
Sbjct: 304 LDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKD 348


>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 396

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 197/363 (54%), Gaps = 39/363 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL--------- 58
           P+++  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L           
Sbjct: 43  PEIV-SALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQK 101

Query: 59  -------ASTLLAENDRFS----PASAPLALAIAPTRELAVQV-------GRELEWLYAK 100
                  A    +  DR +    P + P  L + PTRELA+QV       G+ L  L   
Sbjct: 102 AQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 161

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           +       +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD M
Sbjct: 162 S------ILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRM 215

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF +DIE I+D++P+ R+ ++FSAT+   I +L     KD  R+ I  + R  S  +
Sbjct: 216 LDMGFIEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEI--QQRLESRAN 273

Query: 221 YRAVLVALSDRDNA---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +  + DRD+    + ++LR +    AI+F +T+    +    LA+  F+  AL G+
Sbjct: 274 IAQTVHYVDDRDHKDRLLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGFESAALHGD 333

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGR
Sbjct: 334 LPQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGR 393

Query: 338 AGR 340
           AGR
Sbjct: 394 AGR 396


>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 444

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 14/371 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +   GY   T VQE ++ P +  KD+L  AQTG+GKT AF L +   L+ E      A
Sbjct: 14  DGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPILHRLITEPHD---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGAHIVV 129
               +L I PTRELAVQ+ + LE +   T V      GG +      E++ L +G  IV+
Sbjct: 71  RKINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKKALTSGVDIVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+  H+    + +  +K +VLDEAD MLD+GF DDI  I  + PK+R+ L+FSAT+
Sbjct: 131 CTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKERQNLLFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA         +NIA  ++    I   A +V    +   I  +L        I+
Sbjct: 191 PDKIRKLALKILHQPEEINIAI-SKPPEKIVQEAFVVFEEQKTGLIKQLLARKEFGCIII 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FCS + +V + T  L +  F V  +  +L Q +R   L   ++ + ++ +ATD+ +RGID
Sbjct: 250 FCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-------FRE 362
           + D++LVI+ ++ ++ E+ +HR GRT RA   G +  +I +  QR+  R+         +
Sbjct: 310 IEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEVLGKPVTK 369

Query: 363 ANVSVVWEPAP 373
           A V     P P
Sbjct: 370 AEVPAALGPVP 380


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL E  Y   T +Q   +   L+ +DV+  AQTG+GKT +F L +   LL  
Sbjct: 8   NLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILHRLLEN 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P +A   L ++PTREL+ Q+            +   + IGGV + R+ R +  G 
Sbjct: 68  RIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQVRAVMPGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D ++G  L +SH++ +VLDEAD MLD+GF +DI  I+   P KR+ L F
Sbjct: 127 DVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA +  +D  RV +   +     I  R + V  S + + +  +L+     
Sbjct: 187 SATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPSLLAQLLKNEPVN 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  +ATD+AA
Sbjct: 247 RALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  +  V++ +L + PE  +HR GRT RAG  G+++ ++
Sbjct: 307 RGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLV 349


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+  G  + + +    
Sbjct: 611 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 668

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            + +P   P  L +APTRELA Q+  E    + ++  V   C+ GG S   + R+L+ GA
Sbjct: 669 YQNNPMLGPTVLVLAPTRELASQIQDEA-VKFGRSSRVSCTCLYGGTSKGLQLRELERGA 727

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R+ LM+
Sbjct: 728 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 787

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +AT    +T +A +  KD V+VNI S +      S   Y  V+  L D+   +  ILR  
Sbjct: 788 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 846

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G+K  I+FCST+    +  + +    F   ++ G+ SQ ER N L   R GRA + +A
Sbjct: 847 ERGSK-VIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRAPILVA 904

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S
Sbjct: 905 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 948


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 189/367 (51%), Gaps = 7/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
           ALSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  ALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAP 373
             +EP+P
Sbjct: 380 KGFEPSP 386


>gi|241949729|ref|XP_002417587.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640925|emb|CAX45242.1| ATP-dependent, RNA helicase, putative [Candida dubliniensis CD36]
          Length = 538

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 186/318 (58%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + ++   +  + +     L I+PTRELA+Q+   L
Sbjct: 162 LSNKDVIGVAETGSGKTFAFGVPAINNIITTGNTNTLS----VLCISPTRELALQIYDNL 217

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L A +GV      GGVS   + R L+  A++VV TPGRL D I    +N+ ++  +VL
Sbjct: 218 IELTADSGVNCVAVYGGVSKDDQIRKLKT-ANVVVATPGRLVDLINDGAINLGNVNYLVL 276

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ +++  KR+ LMF+AT    +  LA N+    V+V +   +
Sbjct: 277 DEADRMLEKGFEEDIKTIISNTNNAKRQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 336

Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266
              ++     ++  ++  D++  ++ +LR + A  +     ++F   +   SR    L  
Sbjct: 337 ELSANKRITQIVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 396

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + F V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P++++VI+       E
Sbjct: 397 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 456

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG KG +
Sbjct: 457 DYVHRIGRTGRAGAKGTA 474


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSV 375
             +EP+P V
Sbjct: 380 KGFEPSPVV 388


>gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 789

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 193/373 (51%), Gaps = 28/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I + +   GY + T +Q   +   L  +D++  A+TGSGKT AF + L    T L
Sbjct: 367 SLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVWITGL 426

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            E+DR S + + P A+ +APTRELA Q+  E      K G+     IGG+S   +   L+
Sbjct: 427 PESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQGFQLR 486

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VV+DEAD M+D+GF  D++ IL+  P     
Sbjct: 487 LGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPVTNIK 546

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ P +  LA+ Y +    V I S  +   
Sbjct: 547 PDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAGKPVD 606

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++ +  +++ + +   ++ IL        +VF + +       K L +  F    L G 
Sbjct: 607 RVEQKVYMLSAAQKKKKLLEILSNKLDPPVLVFVNQKKGADVLAKSLEKQGFSATTLHGG 666

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  +++G   + +ATDVA RGID+ D+ +VI+ +++ N E+  HR GRTGR
Sbjct: 667 KGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYTHRIGRTGR 726

Query: 338 AGRKGMSVFVIPQ 350
           AG+ G++V  + Q
Sbjct: 727 AGKSGIAVTFLTQ 739


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 185/351 (52%), Gaps = 16/351 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
             EAL   G +    +QE  L   L   D++  A+TG+GKT+ FGL L   ++   D   
Sbjct: 41  TAEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPLLERVVVPADVEA 100

Query: 68  -RFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R  P     +P AL + PTREL  QV  +L        V V    GG +   +   L+ 
Sbjct: 101 GRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKK 160

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+GTPGRL D    K LN+ ++K +VLDEADEMLDLGF  D+E I++  P +R+ +
Sbjct: 161 GVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEKIINMLPARRQTM 220

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237
           +FSAT+  A+  LA+ Y      +   S +      R  S   YRA  +   D+   +  
Sbjct: 221 LFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHNM---DKPELVAR 277

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    +VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  V
Sbjct: 278 ILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDV 337

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG KG+++ ++
Sbjct: 338 LVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLV 388


>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 744

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 19/379 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-- 70
           E L++RG   L  +QE         KD++   +TGSGKT+ F L L   L  E +  S  
Sbjct: 81  EILNKRGITYLFPIQEHCFQAIQAGKDLIGKDRTGSGKTLGFSLPLIEKLRNEGNFTSIK 140

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L + PTREL +QV  E+  L +      V    GGV V  +   +++G  IVV
Sbjct: 141 KKQTPYMLVVVPTRELCIQVANEINTLKHTDNEFRVLQIYGGVDVREQANQIRDGVEIVV 200

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKRRMLM 184
           GTPGR+ D      L    + A VLDEAD+ML+ GF++DIE I      D   ++ + L+
Sbjct: 201 GTPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFIKNDKGEERPQNLL 260

Query: 185 FSATISPAITTLAKNY-QKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVN-ILR 240
           FSAT+   +  +A+ + ++D V +++     N+   D+ + A+      R  AI + IL 
Sbjct: 261 FSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPYFQRTEAIGDVILC 320

Query: 241 YHGAKNA--IVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARV 297
           Y G  ++  I+FC T+   +    +L  ++ Q V  L G++ Q++R    Q  R+G+ + 
Sbjct: 321 YGGGAHSRVIIFCETKNEANEI--MLKANIKQDVQVLHGDIPQKQREITFQGFREGKFKC 378

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT+VAARG+D+P+++L++  E     +  +HRSGRTGRAG+KG+ +    +  Q   E
Sbjct: 379 LVATNVAARGLDIPEVDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCITFYTKKQQSLIE 438

Query: 358 RLFREANVSV--VWEPAPS 374
           R+ ++ ++ +  V  P P+
Sbjct: 439 RIEKKCHIKMQKVGAPQPA 457


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 178/319 (55%), Gaps = 13/319 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWL 97
           DV+  AQTG+GKT+AF       LL   +  SP  +A   L I PTRELA+Q+  E   L
Sbjct: 41  DVIAEAQTGTGKTLAF-------LLPMFENISPNINAIQGLIITPTRELAIQITEEAMKL 93

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                + +    GG  +  + + L+N  H+V+ TPGRL DH+    LN   LK +VLDEA
Sbjct: 94  KKAKDLNILAAYGGKDIGSQIKKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEA 153

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DEML +GF++++  I++++P+KR+ L FSAT++  +  LA    +D   + I  E     
Sbjct: 154 DEMLLMGFKNEVRSIIENTPRKRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLK 213

Query: 218 DIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +I  + VL+  +DR     +  IL       AI+FC T+  V    + L +  +    L 
Sbjct: 214 NI--KQVLIETTDRRKQEDLCKILNEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLH 271

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G ++Q +R   ++  ++   +  IATDVAARG+D+  +  V + ++  N E+ +HR GRT
Sbjct: 272 GSMTQPKRERIMRSFKNLEIQYLIATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRT 331

Query: 336 GRAGRKGMS-VFVIPQNMQ 353
           GRAG KG + +FV P++ Q
Sbjct: 332 GRAGEKGYTFLFVAPKDEQ 350


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 9/353 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E L   G    T +Q+  +      KDV+  AQTG+GKT+AF L +   +       
Sbjct: 12  IINE-LKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLPIFENI------- 63

Query: 70  SP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           SP  ++  AL + PTRELA+Q+  E   L     + +    GG  +  + + L+   H++
Sbjct: 64  SPNINSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLKRNIHLI 123

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH+  K +++S LK +VLDEAD+ML +GF++D+E I+    KKR+ L FSAT
Sbjct: 124 IATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQTLCFSAT 183

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  LA  Y  D + V+I  E    ++I    +      + +A+ NI+       AI
Sbjct: 184 MNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIETTDRKKQDALCNIIDQDNPFMAI 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V      L +  +    L  ++ Q +R   ++  R+   +  IATDVAARG+
Sbjct: 244 IFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAARGL 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  +  + + ++  N E+ +HR GRTGRAG +G +   +    +R  E + R
Sbjct: 304 DISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEIER 356


>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
 gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
          Length = 470

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 193/342 (56%), Gaps = 9/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA  +  +   T +Q   +   L+ +DV+  AQTGSGKT AF + +   L  ++ R  
Sbjct: 36  ICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPILQGLW-DDPR-- 92

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               PL A  +APTREL+ Q+ +++E L A  GV  A  +GG+ +  +   L    H++V
Sbjct: 93  ----PLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSIALSKRPHVIV 148

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG ++  L+ +V+DEAD +LDL F   I+ +L + PK+RR ++FSAT
Sbjct: 149 ATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPKERRTMLFSAT 208

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   ++ VR+ I ++    S +    + +  + +D  +V++       + I
Sbjct: 209 MTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDTYLVHLANEQVGHSII 268

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T     R   +L    F  + L G+LSQ  R  AL   + G   + + TDVAARG+
Sbjct: 269 VFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMVCTDVAARGL 328

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P ++LV++ ++ ++ ++ +HR GRT RAGR+G SV ++ Q
Sbjct: 329 DIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQ 370


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   + L  ND      
Sbjct: 22  LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H+++ TPG
Sbjct: 76  -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FSATI+  +
Sbjct: 135 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  Y K+ V V+I  E    ++I    V      + +A+  +L       AI+FC T
Sbjct: 195 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+RG+D+  +
Sbjct: 255 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
             + + +L   PE+ +HR GRTGRAG +G +  F+ P+N     ER+  E   ++
Sbjct: 315 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 364


>gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
          Length = 449

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A         
Sbjct: 15  AVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANTGAVRGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    +  +V +A  N     +  +   V    +   +  ++     +  +VF  T
Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368
             V++ EL +  E+ +HR GRTGRA   G++   V V    + R  ERL  RE     V 
Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 197/386 (51%), Gaps = 26/386 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I   L + G    T +Q+  +   L  KDV+  AQTG+GKT+AF L L   L +++ 
Sbjct: 10  PEMINH-LKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLFEKLSSKSP 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL ++PTRELA+Q+ +E + L     + +    GG     + + L    H+
Sbjct: 69  NIQ------ALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLGKPVHL 122

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL DHI  K +++S     VLDEAD+ML +GF++D+E I    PKKR+ L FSA
Sbjct: 123 VIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQTLCFSA 182

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  Y      V IA +      I    V      +  A++ +L       A
Sbjct: 183 TMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQVLSEDNPYMA 242

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+  V    + + +  +  V L  ++ Q +R   ++  + G  +  IATDVAARG
Sbjct: 243 IIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLIATDVAARG 302

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVS 366
           +D+  +  + + ++   PE  +HR GRTGRAG  G + +F+ P+N +  +E         
Sbjct: 303 LDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSE--------- 353

Query: 367 VVWEPAPSVEA-IRERDAQRILQDPL 391
                   +EA IR +  +RILQD L
Sbjct: 354 --------IEAHIRFKIPRRILQDIL 371


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/346 (36%), Positives = 190/346 (54%), Gaps = 11/346 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 233 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 292

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ GT
Sbjct: 293 LQEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQIREISRGCNVLCGT 352

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 353 PGRLLDVIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 411

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    +   ++++L+  G +
Sbjct: 412 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTTGTE 471

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 472 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 531

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           RG+D+PD++ V++ +L SN +  +HR GRTGR G  G +V F  P+
Sbjct: 532 RGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSFYDPE 577


>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 445

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 201/372 (54%), Gaps = 8/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ERGY   T +Q+  +   L   D+L  AQTG+GKT  F L +   L  ++ +     
Sbjct: 15  AVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPILHRLSDKSVKGPSTG 74

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P   AL + PTRELA QV   +        +   + IGGV+++ +   L++   I+V T
Sbjct: 75  RPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQITRLKSRVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K L++S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FSAT S 
Sbjct: 135 PGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLPKQRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +       +  A  N     + +    V    + + + ++++ HG    +VF 
Sbjct: 195 EIRALADSLLNQPALIEAARRNAIADKVTHVVHPVDRERKRHLLAHLIKQHGWSQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++  + L       +A+ G  SQ  R+ AL   + G  +V +ATD+AARGID+ 
Sbjct: 255 RTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGSLQVLVATDIAARGIDIN 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE---ANV 365
           +L  V++ EL   PE+ +HR GRTGRAG +G +V ++      +    E+L +    ++V
Sbjct: 315 ELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELKLLTAIEKLIKHELRSHV 374

Query: 366 SVVWEPAPSVEA 377
              +EP P ++A
Sbjct: 375 IAGFEPDPRIKA 386


>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
 gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 441

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL    A+
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G 
Sbjct: 71  ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK + LMF
Sbjct: 125 EILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++     
Sbjct: 185 SATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLH 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AA
Sbjct: 245 QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++
Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 197/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N       
Sbjct: 15  AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252
             LA+    +  +V +A  N     +     LV    R   ++++L   G  +  +VF  
Sbjct: 195 KILAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARGID+ +
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ER+  RE     +
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKREIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 DGFEPDPSIKA 384


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/377 (33%), Positives = 201/377 (53%), Gaps = 12/377 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +  +GY   T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 137 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 195

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R S    P+ L +APTRELA Q+ +E+   + +T  V   CI GG     +
Sbjct: 196 AIVHIIHQPRLSNGDGPIVLVLAPTRELAQQI-QEVANCFGETAAVRNTCIFGGAPKGPQ 254

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 255 AHDLERGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 314

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D V +NI S     + +I     +    ++D+ + 
Sbjct: 315 PDRQVLMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCHEYEKDSKLY 374

Query: 237 NILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +L+  G +     I+F  T+  V   T+ +    +Q V++ G+ +QQER + LQ  R G
Sbjct: 375 RLLQEIGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSG 434

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           RA + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM
Sbjct: 435 RAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNM 494

Query: 353 QRRAE--RLFREANVSV 367
           +   +   + REA  +V
Sbjct: 495 KHAGDLIEVLREAGQNV 511


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   LL++  R    
Sbjct: 14  KAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-LLSKGPRVRQN 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   +        +  +V  GGV ++ + + L+ G+ ++V TP
Sbjct: 73  QV-RALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLRKGSDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT S  
Sbjct: 132 GRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSATFSDD 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LAK    + V ++++  N     ++     V    +   +  +++ +  +  +VF  
Sbjct: 192 IRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSPMLAKLIKDNDWRQVLVFSK 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AARGID+P 
Sbjct: 252 TKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 312 LPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLV 347


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/335 (36%), Positives = 184/335 (54%), Gaps = 7/335 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ+  +    R +DVL SAQTG+GKT AF L +   L+       P++A + L + P
Sbjct: 1   MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNARV-LILTP 59

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA QV   +        +      GG     + R L+ GAHI+V TPGRL +H+   
Sbjct: 60  TRELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTAC 119

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L++S ++ +VLDEAD +LD+GF  D++ IL +  K R+ L+FSAT S A+  LA N   
Sbjct: 120 NLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLA-NLML 178

Query: 203 DAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           D  +  I S N+Q+S  D   +    V    +   +  ++        +VF STR S   
Sbjct: 179 D--KPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGKQNWPQVLVFASTRESCDE 236

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L     +   + G+ +Q  R  AL+   +G+ RV +AT+VAARG+D+PDLE V++ 
Sbjct: 237 LVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNY 296

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +L    E+ +HR GRTGRAG+ GM++  + +  +R
Sbjct: 297 DLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEER 331


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 190/359 (52%), Gaps = 6/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   + +Q       L  +DV+  + TGSGKT+AF L  A   +   
Sbjct: 114 FPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLP-AMIHINAQ 172

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 173 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLSRGAE 232

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ IL+     R+ LMFS
Sbjct: 233 IVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIRPDRQTLMFS 292

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    I  LA  Y KD ++VN+ S     ++++   ++   SD  +   ++  L    A
Sbjct: 293 ATWPKEIQRLANEYLKDFIQVNVGSLELT-ANVNITQIVEVCSDFEKKGKLIKHLEKISA 351

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           ++A  ++F  T+      TK L +  +  +A+ G+  Q ER   L   + GR+ + IATD
Sbjct: 352 ESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIMIATD 411

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAGR G +   I  +  + A  L +
Sbjct: 412 VASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGKLARELVK 470


>gi|313812224|gb|EFS49938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 491

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFR 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   L+A +     A 
Sbjct: 15  ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        V  AV  GGV +  +   L+ G  +++  PG
Sbjct: 74  KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R+ L+FSAT +  
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +      V +AS N     I +R   V +S +   ++ +L     +  +VF  
Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368
           L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q    + R+  RL  R+ ++  V
Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373

Query: 369 WEPAPSV 375
            +  P V
Sbjct: 374 PDFEPQV 380


>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 440

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/341 (36%), Positives = 184/341 (53%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL E G   + S+QE  L   L  +D++  A+TG GKT AFG+ L   +  +     
Sbjct: 17  IVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLDRVFDDAAIEE 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELAVQV  +L    +KT V +    GG     +   L+ G  +VVG
Sbjct: 77  LDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNALEAGVDVVVG 136

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D H RG  L +  +  +VLDEADEMLDLGF  DI+ +  +  +  + ++FSAT+
Sbjct: 137 TPGRLLDLHERGD-LVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPLQTMLFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNA 247
              I  LA+      V +   S ++ Q  D   + V V+   D+   +  +L+  G    
Sbjct: 196 PAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVARVLQADGRGRT 255

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + +   + +A   F V ++ G+L Q  R  +L+  R G   + +ATDVAARG
Sbjct: 256 IIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEILVATDVAARG 315

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ +   +P   +HR GRTGRAGR G +V ++
Sbjct: 316 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLV 356


>gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
 gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
          Length = 444

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 6/347 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    I EAL +    + T +QE  L   L   DV+  AQTG+GKT AF ++L   
Sbjct: 11  FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL  N     A  P A+ +APTRELAVQ+ ++ + + A TG+      GGVS+  +R  L
Sbjct: 71  LLT-NPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLL 129

Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           +N    I++GTPGR+ D  + K + + +++  VLDEAD M DLGF DD+ ++L   P   
Sbjct: 130 ENAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAH 189

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  L+FSAT++  +  LA  Y      V+I S      +I       A  ++   ++ +
Sbjct: 190 ERLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKHEKTPLLIGL 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       +++F +T+  + R + VL  + +   ALSG++ Q++R   ++  + G   + 
Sbjct: 250 LNRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSGDIPQKKREKIIKDFQSGAVNIV 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +PD+  V + +L    E+ +HR GRT RAG  G ++
Sbjct: 310 VATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAI 356


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFIK--------NKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  L++ Y  + VR+ + + N+  ++I   ++ ++  ++ + +   L 
Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSELTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 232 NREG-SVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 345


>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
 gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
          Length = 441

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 184/343 (53%), Gaps = 10/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL    A+
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPKAQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G 
Sbjct: 71  ANRIK------TLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK + LMF
Sbjct: 125 EILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++     
Sbjct: 185 SATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLH 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AA
Sbjct: 245 QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++
Sbjct: 305 RGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|119963413|ref|YP_949241.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950272|gb|ABM09183.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 576

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+ I E+L+  G      +Q   L   L  +DVL   +TGSGKT+AF + L + L   E 
Sbjct: 13  PKPIAESLAADGIEEAFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+ + L+ G  
Sbjct: 73  KHFRKPGRPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGISQARQEKALRAGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P + + L+FS
Sbjct: 133 IVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTPTQGQRLLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+   +  L   Y  + +  ++       + +++  ++V   + +   IV +    GA 
Sbjct: 193 ATLDNGVDKLVNRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K L +     V L G LSQ  R   L    +G  RV +ATDVAA
Sbjct: 251 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   ++L + A V
Sbjct: 311 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVKKLMKAAGV 370

Query: 366 SVVWE 370
            V +E
Sbjct: 371 DVSFE 375


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 182/338 (53%), Gaps = 6/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     +  PA
Sbjct: 14  KAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL----SKGQPA 69

Query: 73  SAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  I++ 
Sbjct: 70  KANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N     +      V  + + + +V ++  H  +  +VF
Sbjct: 190 EDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+
Sbjct: 250 SRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L    ++ +HR GRTGRAG  G ++ ++
Sbjct: 310 EQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 347


>gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
          Length = 442

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
 gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
          Length = 449

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 192/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A         
Sbjct: 15  AVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANTGAVRGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+    +  +V +A  N     +  +   V    +   +  ++     +  +VF  T
Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368
             V++ EL +  E+ +HR GRTGRA   G++   V V    + R  ERL  RE     V 
Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|317152754|ref|YP_004120802.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943005|gb|ADU62056.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 681

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 194/347 (55%), Gaps = 7/347 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE +P  + +A    G+  L  VQ+  +   L ++DV+V A+TGSGKT AF L L   L
Sbjct: 24  TFEALPDKLRKACDRAGWTKLMPVQQKAMPFLLEDRDVMVQARTGSGKTGAFVLPLLQKL 83

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A   +        AL + PTRELA QV  E   L  + G+ V    GGV    +    +
Sbjct: 84  DANLPQCQ------ALVMVPTRELARQVADEALMLSGEEGIGVVAVYGGVGYKEQLDAFR 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR- 181
           +GA +VVGTPGR+ DH+  + L + HLK ++ DEAD ML +GF  D+  +    P+  R 
Sbjct: 138 DGAQLVVGTPGRILDHLVRRNLTLDHLKTLIFDEADRMLSVGFYPDMVEVKRYLPRTLRG 197

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT   ++  LA+ +      ++++S+    S I ++ V VA   ++  ++ ++  
Sbjct: 198 AYMFSATFPQSVLRLAEEFMDKPEFLSLSSDEANISSIAHQFVEVAAMGKERKLIKLIEL 257

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A++F +T+ +V     +L++  F    L+ +L+Q +R + +  +++G+ R  +AT
Sbjct: 258 ENPTSALIFSNTKRNVEFTAALLSQFGFDAEGLTSDLTQGKRESLMARIKEGKLRFLVAT 317

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+P+L  V   E   +PE+ +HR+GRTGRAG  G ++ ++
Sbjct: 318 DVAARGIDIPELSHVFMLEPPEDPESYVHRAGRTGRAGATGTAITLV 364


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 186/335 (55%), Gaps = 11/335 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   L  KD +  AQ+G+GKT  F + + + +       +      A+
Sbjct: 42  GFEAPSAIQSRAIMQILTGKDTIAQAQSGTGKTATFSIGMLNVV------DTKKKDTQAI 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+   ++ L     +    CIGG SV  + + LQ G HIV GTPGR+CD 
Sbjct: 96  VLSPTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKKLQKGQHIVSGTPGRVCDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + LN+ ++K +VLDEADE++  GF++ I  I  + P   ++++ SAT++  +  +  
Sbjct: 156 IKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPSTQVVVVSATLTKEVLVMTN 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D V++ +  +      I  R   +     +   + + ++        A++FC+T+ 
Sbjct: 216 KFMNDPVKILVKRDEVSLEGI--RQFYIQCEKEEWKFDTLCDLYDSLTVTQAVIFCNTKK 273

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ L +  F VV++ G++ Q++R   +   R G +RV I+TDV ARGID+  + L
Sbjct: 274 KVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVLISTDVWARGIDVQQVSL 333

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           VI+ ++    EN +HR GR+GR GRKGM+V ++ +
Sbjct: 334 VINYDIPFAKENYIHRIGRSGRFGRKGMAVNLVTE 368


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 193/359 (53%), Gaps = 6/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   + +Q       L  +DV+  + TGSGKT+AF +  A   +   
Sbjct: 120 FPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIP-AMIHINAQ 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 179 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTRGAE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ I++     R+ LMFS
Sbjct: 239 IVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA  Y KD ++VN+ S +   ++I+   ++   SD  +   ++  L    +
Sbjct: 299 ATWPKEVQRLASEYLKDFIQVNVGSLDLT-ANINITQIVEVCSDFEKRGKLIKHLEKISS 357

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           ++A  ++F  T+      TK L +  +  +A+ G+  QQER   L+  + GR+ + IATD
Sbjct: 358 ESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATD 417

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAGR G +   I  +  + A+ L +
Sbjct: 418 VASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSKLAKELVK 476


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   + L  ND      
Sbjct: 22  LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H+++ TPG
Sbjct: 76  -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FSATI+  +
Sbjct: 135 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  Y K+ V V+I  E    ++I    V      + +A+  +L       AI+FC T
Sbjct: 195 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+RG+D+  +
Sbjct: 255 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
             + + +L   PE+ +HR GRTGRAG +G +  F+ P+N     ER+  E   ++
Sbjct: 315 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 364


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 189/348 (54%), Gaps = 12/348 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +KI E+I +    ++ E G+     +Q   +   LR  DV+  A TG+GKT AFG+ +  
Sbjct: 7   LKINEDIMR----SIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPMLQ 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++              L IAPTRELA+Q+  E++ +   T + V    GG  +  +   
Sbjct: 63  NIIH-------GGGIQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQLDA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IVV TPGRL DH+    +   ++K VVLDEAD MLD+GF +DIE++L   P  R
Sbjct: 116 LRRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPGNR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              ++SAT+ P I  L+  Y  +A  + I S++     ID   +++   ++   + + + 
Sbjct: 176 ITSLWSATMPPEILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKYLTDFIN 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  IVFCST+       + L +  ++VV + G++SQ +R  ++   R  +A + +A
Sbjct: 236 QNKGQ-VIVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADILVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+P + LV++ ++ +      HR GRT RAG KG ++ ++
Sbjct: 295 TDVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLV 342


>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 454

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 183/331 (55%), Gaps = 10/331 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A +   L  +DV+  A TGSGKT AF + +   LL +  R         + +AP+
Sbjct: 56  TPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRI------YCVVLAPS 109

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           REL  Q+  +   L +   + V V IGGV +  +   L    H++V +PGRL DH+   K
Sbjct: 110 RELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVENTK 169

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++S +K +V+DEAD +L   F ++++ I+ + P +R+  +FSAT++  ++ L K   K
Sbjct: 170 GFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMALK 229

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D + V +  +     ++D R +LV    +   +  +L Y+  + AIVFC T     R   
Sbjct: 230 DPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRCAA 289

Query: 263 VLAEHLFQV---VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            L    F     V L G+++Q +RS ALQ+ + G   + +AT+V  RG+DLP +ELVI+ 
Sbjct: 290 YLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVINF 349

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++    ++ +HR GRT RAGR G+++ V+ Q
Sbjct: 350 DIPECSKDYIHRVGRTARAGRSGLALTVVTQ 380


>gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 622

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 10/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F ++  P  I ++  + GY   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 69  MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E   +  +   +   C+ GG     +
Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+    ++V   D+   + 
Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L   L   V+A+ G+  Q +R   L   R    
Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P  
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427

Query: 352 MQRRAERLFREANVSV 367
             R    L R AN  V
Sbjct: 428 TIRDLVDLLRRANQEV 443


>gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus]
          Length = 798

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 375 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 434

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 435 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 494

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 495 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 554

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 555 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 614

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 615 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 674

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 675 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 734

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 735 RAGKSGVAITFL 746


>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
           Silveira]
          Length = 474

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 61  EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   PK+RR  +FSAT+S 
Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    +++    +D  ++ +L     ++ IVF
Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIVF 294

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 295 TRTVNETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394


>gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
 gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
          Length = 436

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q+G  I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK 
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLV 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
 gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
          Length = 477

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +     T  AE+   
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 72  GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371

Query: 366 SVV--WEPAPSVE 376
            V+  +EP P+ +
Sbjct: 372 EVIAGFEPDPNAK 384


>gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 187/345 (54%), Gaps = 1/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY   T +Q   +   L ++D+L  AQTG+GKT +F + +   L   
Sbjct: 7   NITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQHL-QM 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   +      AL +  TRELA+Q+   +      T V   V  GGV+   +   L  G 
Sbjct: 66  NKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLHKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K+ VR++I  ++     I+     V   ++   +V+IL+    +
Sbjct: 186 SATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSILQKSEDQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  +  K+L +      A+ G  SQ  R  AL   + G+ RV +ATD+AA
Sbjct: 246 SVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQ 350


>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 486

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +     T  AE+   
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 72  GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371

Query: 366 SVV--WEPAPSVE 376
            V+  +EP P+ +
Sbjct: 372 EVIAGFEPDPNAK 384


>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   L+A +     A 
Sbjct: 15  ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        V  AV  GGV +  +   L+ G  +++  PG
Sbjct: 74  KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R+ L+FSAT +  
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +      V +AS N     I +R   V +S +   ++ +L     +  +VF  
Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368
           L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q    + R+  RL  R+ ++  V
Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373

Query: 369 WEPAPSV 375
            +  P V
Sbjct: 374 PDFEPQV 380


>gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus]
 gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus]
          Length = 819

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 396 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 455

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 456 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 515

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 516 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 575

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 576 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 635

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 636 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 695

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 696 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 755

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 756 RAGKSGVAITFL 767


>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
 gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
          Length = 478

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 194/347 (55%), Gaps = 11/347 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IPQ+  EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +   L+ + 
Sbjct: 60  IPQLC-EACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKP 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L +APTRELA Q+    E L +   V   V +GG+ +  +   +    H
Sbjct: 119 QPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 172

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   I+ IL   P++RR  +F
Sbjct: 173 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+S  +  L +    + +RV+++S   Q  S +    + +    +D  ++ +L  H  
Sbjct: 233 SATMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLIWLLNEHVG 292

Query: 245 KNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           ++ I+F  T     R T +LA  L F  +AL G+LSQ  R  AL   R     + IATDV
Sbjct: 293 QSVIIFTRTVHETMRLT-ILARALGFGAIALHGQLSQSARLGALGKFRSRSRDILIATDV 351

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+P ++LV++ +L+++ +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 352 AARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQ 398


>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
 gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
          Length = 473

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 12/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA +  GY   T +Q   +   L+++D++  A+TGSGKT AF L +   L+ +   F   
Sbjct: 66  EACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSF--- 122

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 123 ---FGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 179

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 180 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERRTFLFSATMSS 239

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            + +L +    + +RV+++S   Q        YR   +    +D  +V +L     ++AI
Sbjct: 240 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYR--FIPHKHKDIYLVYLLNEFVGQSAI 297

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T     R + +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+
Sbjct: 298 IFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGL 357

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q
Sbjct: 358 DIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 399


>gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan
           troglodytes]
          Length = 800

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 737 RAGKSGVAITFL 748


>gi|120610252|ref|YP_969930.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588716|gb|ABM32156.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/340 (38%), Positives = 185/340 (54%), Gaps = 8/340 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPASA-P 75
           G+   T +Q   +   L   DVL  AQTGSGKT AFGL L   LL  A+     P    P
Sbjct: 20  GFDTPTPIQAQAIPAVLDGGDVLGRAQTGSGKTAAFGLPLLQRLLPQAQQAGARPGPRRP 79

Query: 76  LALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            AL + PTRELA QVG   R+L        + +A+  GGVS++ +   L+ GA  VV TP
Sbjct: 80  GALVLVPTRELAAQVGEVLRDLAGHLPGPRLKIAIACGGVSINPQLMALRGGADAVVATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L++S ++A+VLDEAD +LDLGF ++++ +L   P +R+ L+FSAT  P 
Sbjct: 140 GRLLDLVEHNALSLSQVRALVLDEADRLLDLGFAEELQRVLALLPAQRQNLLFSATFEPG 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNAIVFC 251
           +  LA+   +D +R+ IA       DI  RA+ V    R   +  +L    G    +VF 
Sbjct: 200 VARLAEGLLRDPLRIEIAGAPGTAPDIAQRAIAVEAPRRTQLLKQLLTQEPGWTRVLVFV 259

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+ +     + L +         G LSQ  R   LQ  RD R +V + TD+AARGID+ 
Sbjct: 260 ATQYAAEHVAEKLYQSGIYASPFHGGLSQGTRRQVLQEFRDERWQVLVTTDLAARGIDIA 319

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            L  V++ +L     + +HR GRTGRAG  G++V FV P+
Sbjct: 320 GLPAVVNYDLPRAAADYVHRIGRTGRAGASGVAVSFVTPE 359


>gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 454

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 12/373 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L   L   N R S A 
Sbjct: 15  AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLL---NGRPSQAK 71

Query: 74  A--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P+ AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  I++ 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++SH++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA     +   V +   N     +      V    +   + +++  H  +  +VF
Sbjct: 192 DEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHDWRQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFRE--ANV 365
             L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +
Sbjct: 312 DQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRM 371

Query: 366 SVV-WEPAPSVEA 377
            +  +EP P+++A
Sbjct: 372 EIAGYEPDPTIKA 384


>gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 416

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 4/354 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+   +   T +Q   +   +   D+L  AQTG+GKT+AFGL L   LLA+  + +
Sbjct: 13  LNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLIDHLLAQPGKPA 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +A  AL +APTREL  Q+   L  L  KT + VA  +GG S++++   L  G  I+V 
Sbjct: 73  PKTAK-ALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFLSRGTDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    +++  ++ +VLDEAD+MLD+GF   +  I       R+ ++FSAT+ 
Sbjct: 132 TPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y  +  RV ++   +    I      V+   +   +  IL        +VF
Sbjct: 192 KQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGKPEKLRQILSQDTDALTLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L    +   ++ G  SQ +R  A++  R G   V +ATDVAARGID+
Sbjct: 252 ARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEITVLVATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQRRAERLFR 361
           P +  VI+ +L   P+N +HR GRT RAGR+G ++ F  P   ++ R+ ++L +
Sbjct: 312 PGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLLRQIQKLMK 365


>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
 gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
          Length = 618

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    + E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVAVQEE 239

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 ILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531


>gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 389

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 181/332 (54%), Gaps = 16/332 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L            P +  P A
Sbjct: 36  GYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQAC-------DPHTREPQA 88

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELAVQ       +    G+    CIGG S   + R L+NG HIV GTPGR+ D
Sbjct: 89  LILSPTRELAVQTQDLCNNIGHHMGLKAYACIGGKSTEEDIRRLENGVHIVSGTPGRVFD 148

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            IR K L ++ LK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + 
Sbjct: 149 MIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMIPP-LQIILVSATLPADVLEMT 207

Query: 198 KNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCST 253
           + +  +   + +    R    +D  R   V++ +  N    ++  + +    +A+VFC+T
Sbjct: 208 EKFMTEPASILV---KRDEITVDSVRQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNT 264

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +  K +    F VVA+ G++ Q ER   ++  RDG +RV I TD+ ARGID+  +
Sbjct: 265 RKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRVLITTDLWARGIDVERV 324

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LV++ +L    E  +HR GRTGR GR G+++
Sbjct: 325 SLVLNYDLPLAREQYIHRIGRTGRMGRTGLAI 356


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 183/332 (55%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE GY   T +Q+  +   L  +D++  AQTG+GKT AFGL L   L AE  +  P  
Sbjct: 16  AVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDRLQAEKKKAVPKG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL  Q+ + L      T + V+  +GGVS++ + + L  G  I+V TPG
Sbjct: 76  T-RALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRLSKGTDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + +++     +VLDEAD+MLDLGF   +  I      KR+ L+FSAT+   I
Sbjct: 135 RLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKRQTLLFSATMPKQI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA++Y ++  RV +A   +    +      +  + + + +V+ LR      ++VFC T
Sbjct: 195 NELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQLRDKPDGLSLVFCRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L+       ++ G  SQ +R  A++ +R+G   V +ATDVAARGID+P +
Sbjct: 255 KHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVLVATDVAARGIDIPGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V + EL    E  +HR GRT RAG +G ++
Sbjct: 315 SHVYNFELPEVAEAYVHRIGRTARAGAEGEAI 346


>gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 699

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 193/365 (52%), Gaps = 14/365 (3%)

Query: 30  ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ 89
           +LN D    +V+  A+TG+GKT AFGL L   L  E+D         A+ + PTRELA+Q
Sbjct: 69  LLNGD---ANVIAKARTGTGKTAAFGLPLVQDLREESDHVR------AIILEPTRELAMQ 119

Query: 90  VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHL 149
              E+           AV  GG S+  + R L+ G  IVVGTPGR+ D I    L+IS +
Sbjct: 120 TATEMASFTTGKYPRTAVVYGGASMGEQMRALRRGVEIVVGTPGRVQDLIDRGVLDISKI 179

Query: 150 KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
              +LDE DEMLD+GF +DIE I + + +  R+L+FSAT+   I  +A+ +  +   V  
Sbjct: 180 DYFILDEGDEMLDMGFIEDIENIFECANQDCRVLLFSATVPKEILKIAQRFMGEYEIVEE 239

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                +   I+ +  ++  S++ +A+V ++        +VF   ++     +K L E  +
Sbjct: 240 EGFEEEPLLIEQKYWVMRESEKVDALVRLIDISPDFFGLVFVQRKSDADYVSKSLDERGY 299

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +  AL G++ Q +R   L   R  + R+ +ATDVAARGID+  +  V++ EL  +    +
Sbjct: 300 EAAALHGDIPQGQREKILARFRSKKTRILVATDVAARGIDIEGVTHVVNYELPFDGPTYV 359

Query: 330 HRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVS----VVWEPAPSVEAIRERDAQ 384
           HR GRTGRAG  GM+V FV P+  +RR   L      S    +V +  PS+E + E    
Sbjct: 360 HRIGRTGRAGAAGMAVTFVKPEETRRRLNYLINTVKKSSKGEIVEDKVPSIEEVLEAKKS 419

Query: 385 RILQD 389
           R+  D
Sbjct: 420 RLFSD 424


>gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Monodelphis domestica]
          Length = 818

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 395 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 454

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 455 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 514

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 515 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 574

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 575 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 634

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 635 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 694

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 695 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 754

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 755 RAGKSGVAITFL 766


>gi|241949959|ref|XP_002417702.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
 gi|223641040|emb|CAX45414.1| DEAD/DEAH box helicase , putative [Candida dubliniensis CD36]
          Length = 568

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 199/370 (53%), Gaps = 32/370 (8%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70
           +S+ GY   TSVQ A +   L ++DV+  A+TGSGKT+AF + + + +L+ ++ +     
Sbjct: 170 ISQLGYDEPTSVQRASIPLALMKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 229

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
            ++ P+ L +APTRELA+Q+ +E E    K G  V   IGG         + Q G H++V
Sbjct: 230 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHQYQDTINQIDQTGVHLIV 289

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177
            TPGRL D I  K +++S    +V+DEAD M+D+GF  D+  ILD  P            
Sbjct: 290 ATPGRLVDSIERKIIDLSKCYCLVMDEADRMIDMGFEKDLNKILDKLPTEKQLSSTIDGR 349

Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVAL 228
               +KR  +MF+ATISP +  + K Y  D   + I     A +N   S  ++ +   A 
Sbjct: 350 IFHLEKRSTMMFTATISPTVEKITKKYLIDPGYLYIGGAGEALDNINQS-FEFLSSATAE 408

Query: 229 SDRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           + + N ++ I+R H    +N   I+F + +      +  L+ +    V + G  SQ  R 
Sbjct: 409 ATKLNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSTELSSNDINNVVIHGSKSQDVRE 468

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+   R+  + V IATDVAARGID+P++ LVI+ ++    +  +HR GRTGRAG  G S
Sbjct: 469 QAITKFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGES 528

Query: 345 -VFVIPQNMQ 353
             F+  Q+M+
Sbjct: 529 FTFISDQDME 538


>gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens]
          Length = 800

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 737 RAGKSGVAITFL 748


>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 453

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++ +  +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKESPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/346 (36%), Positives = 189/346 (54%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAMQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I  ++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKRRQTLM 184

Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           FSAT+  + I  +A    K+   V I + + +H DI  R  L    D   A++  +L   
Sbjct: 185 FSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTRLLSDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ ++ + TD
Sbjct: 245 THKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
          Length = 442

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 184/339 (54%), Gaps = 2/339 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL +    
Sbjct: 11  LICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQPK-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  I++
Sbjct: 69  AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMMKLRKGVEILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK + LMFSAT 
Sbjct: 129 ATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA  +  +   V+    N     I  +   +  S++ NA++++++       +V
Sbjct: 189 SSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLIKDQNLHQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AARGID
Sbjct: 249 FSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++
Sbjct: 309 IAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLV 347


>gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2
           [Macaca mulatta]
          Length = 800

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 377 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 436

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 437 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 496

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 497 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 556

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 557 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 616

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 617 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 676

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 677 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 736

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 737 RAGKSGVAITFL 748


>gi|108711872|gb|ABF99667.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|215686855|dbj|BAG89705.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 597

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 180/317 (56%), Gaps = 8/317 (2%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  L +APTRELA QV +E++    K   +  VC+ GGVS + ++  L  G  +VVGTPG
Sbjct: 20  PRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSRGVDVVVGTPG 76

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++FSAT+   +
Sbjct: 77  RIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWV 136

Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVF 250
             L++ Y  + + +++  +  +     I   A+ +  + +   + +++  Y      IVF
Sbjct: 137 KKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVF 196

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+      +  L   +    AL G++SQ +R   L   R G+  V +ATDVAARG+D+
Sbjct: 197 TKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L R+      + 
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315

Query: 371 PAPSVEAIRERDAQRIL 387
             P++E + E  A+ ++
Sbjct: 316 SPPAIEDVLESSAEHVI 332


>gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/367 (35%), Positives = 197/367 (53%), Gaps = 6/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   L+A +     A 
Sbjct: 15  ALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQRLMAASSNVG-AG 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        V  AV  GGV +  +   L+ G  +++  PG
Sbjct: 74  KPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R+ L+FSAT +  
Sbjct: 134 RLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEP 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +      V +AS N     I +R   V +S +   ++ +L     +  +VF  
Sbjct: 194 IKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLVFVR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 254 TKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVATDIAARGIDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-REANVSVV 368
           L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q    + R+  RL  R+ ++  V
Sbjct: 314 LPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIVRLLDRDMDIRDV 373

Query: 369 WEPAPSV 375
            +  P V
Sbjct: 374 PDFEPQV 380


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 185/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  +L  +            L
Sbjct: 50  GFEKPSAIQQRAIKPIIKGRDVIAQAQSGTGKTATFSIAILQSLDLQ------TRETQVL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 104 CLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 164 IRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPPSTQVVLISATLPHEILEITS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E+ F V ++ G++ Q+ER N ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 284 DWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 NYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|50843247|ref|YP_056474.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
 gi|50840849|gb|AAT83516.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
          Length = 700

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + 
Sbjct: 296 REDNR------PRALILSPTRELAMQIADALSSLASSMGLSTILIAGGMSYGPQTKAFKR 349

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L
Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    G
Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDV
Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A
Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587

Query: 364 NVSVV 368
            V  V
Sbjct: 588 GVKPV 592


>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 408

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 198/373 (53%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +     T  AE+   
Sbjct: 14  KAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHHHA 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A    AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 74  KRAVR--ALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALRRGVDIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 132 ATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371

Query: 366 SVV--WEPAPSVE 376
            V+  +EP P+ +
Sbjct: 372 EVIPGFEPDPNAK 384


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 205/371 (55%), Gaps = 21/371 (5%)

Query: 4    FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            F N P   G  + L  RG   L  VQ    +P    KDV+  AQTG+GKT +F + L   
Sbjct: 872  FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L A++       +P  L +APTRELA QV ++ + +  K  + VA   GG   + +   +
Sbjct: 932  LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRK--LTVACFYGGTPYNGQIDLI 989

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
            ++G  I+VGTPGR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 990  RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 1049

Query: 181  ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDN 233
                + L+FSAT    +  +AK Y K    +V++     Q   + +++ A+    S R  
Sbjct: 1050 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAA 1109

Query: 234  AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
             I ++++ Y G+    IVFC T+   +     L   + Q   +L G++ Q++R   L+  
Sbjct: 1110 VIGDVIQVYSGSHGRTIVFCETKKDANEL--ALNASIKQDCQSLHGDIPQKQREITLKGF 1167

Query: 291  RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            R+G  +V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +     
Sbjct: 1168 RNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICF--- 1224

Query: 351  NMQRRAERLFR 361
              QR+ E   R
Sbjct: 1225 -YQRKEENQLR 1234


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 182/336 (54%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L     + + A
Sbjct: 14  KAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL--SKGQSAKA 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  I++ TP
Sbjct: 72  NQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVDILIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + P KR+ LMFSAT S  
Sbjct: 132 GRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFSATFSED 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    + V +++   N     +      V  + + + +V ++  H  +  +VF  
Sbjct: 192 IRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+  
Sbjct: 252 TKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDIEQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L    ++ +HR GRTGRAG  G ++ ++
Sbjct: 312 LPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLV 347


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 192/335 (57%), Gaps = 2/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E  +   + VQ+  +   L +K+V+VSAQTG+GKT AF L +   L    D   
Sbjct: 12  ILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPIIQLLFDGQDAEK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L I PTRELA+Q+    +     + +  +   GGVS+  ++  L  G  I++ 
Sbjct: 72  GEKKIKSLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEPQKEILSKGIDILIA 131

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D H +G  +++S ++  VLDEAD MLD+GF +DI+ I    PK+++ L+FSAT+
Sbjct: 132 TPGRLIDLHTQG-NIDLSAIEIFVLDEADLMLDMGFINDIKKIERFCPKQKQTLLFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LAK   K  V V I  E     +I      +   ++ +  +N+L+       I+
Sbjct: 191 PEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLYYLPKKNKTDLCLNLLKNTINGKIII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+  V +  + L ++ ++V ++ G+ +Q  R+ A++  ++  A + IATDVA+RGID
Sbjct: 251 FRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIATDVASRGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           + +++ +I+ ++ + PE  +HR GRTGRAG+ G++
Sbjct: 311 ITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIA 345


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 178/333 (53%), Gaps = 11/333 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY + T +QE  +   L  +D++ ++QTG+GKT AF L L +       R  P 
Sbjct: 14  KAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLLT-------RIQPI 66

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV          TG+ VA+  GGV   ++  DL+ GA IVV TP
Sbjct: 67  GKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLKKGADIVVATP 126

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GRL DH     +    +KA+VLDE D MLD+GF   +  I++  P + R+ L FSAT+ P
Sbjct: 127 GRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQTLFFSATMPP 186

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I   AK    D   V IA      + I +    VAL  RD  ++ +L+    ++ ++F 
Sbjct: 187 VIAGFAKWCLTDPAEVTIARREVA-ATISHAFYPVALDQRDELLLALLKGTDFRSVMIFT 245

Query: 252 STRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            TR        +L  H +  +V  +  ++ Q+ER  AL+  + G+  + +ATDVAARGID
Sbjct: 246 RTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  VI+  +  N E+ +HR GRTGRA   G
Sbjct: 306 ISGVTHVINYRVPENAEDYVHRIGRTGRAEASG 338


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/345 (35%), Positives = 187/345 (54%), Gaps = 5/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + ++L   G    T +QE  +   L  KD++ S++TGSGKT+AF L     L++  
Sbjct: 8   LDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQRLISC- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  + + PTRELA QV  +L  L A T       +GG + + + + L    H
Sbjct: 67  -KALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALSRDPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMF 185
            VV TPGRL DH++   L+++ L+ ++LDEAD MLDLGF + ++ I  ++  KRR  LMF
Sbjct: 126 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAADHKRRQTLMF 185

Query: 186 SATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHG 243
           SAT+    +  +A    K    V I + N +H DI  R  L    D   AI+  IL+   
Sbjct: 186 SATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R    LA   F+  +LSGEL Q  R+  +     G  ++ + TDV
Sbjct: 246 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 306 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1]
 gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1]
          Length = 383

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 196/346 (56%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
             +  R+       AL +APTRELA+Q+  +   L   T + V   +GGV   ++++ L 
Sbjct: 69  PIQEQRYRGEVR--ALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKKPLN 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           +    I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 EKFIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 RDEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKNNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSI 352


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G+++ ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSV 375
             +EP+P V
Sbjct: 380 KGFEPSPVV 388


>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
           carolinensis]
          Length = 820

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 196/376 (52%), Gaps = 30/376 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVTNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSV-FVIPQN 351
           RAG+ G+++ FV  ++
Sbjct: 757 RAGKSGVAISFVTKED 772


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YSLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRILQTGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  N  VV E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN--VVIEELPS 407


>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 487

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 194/348 (55%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL
Sbjct: 103 FKLAPELM-HAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLL 161

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + 
Sbjct: 162 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219

Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  D   V I +EN    +++     VA +D+   + N
Sbjct: 280 SERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV
Sbjct: 340 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 399

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 400 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 447


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 190/355 (53%), Gaps = 14/355 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   + L  ND      
Sbjct: 16  LKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDIND------ 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H+++ TPG
Sbjct: 70  -IQVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIHMIIATPG 128

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FSATI+  +
Sbjct: 129 RLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFSATINSQV 188

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  Y K+ V V+I  E    ++I    V      + +A+  +L       AI+FC T
Sbjct: 189 KKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFMAIIFCRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+RG+D+  +
Sbjct: 249 KRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASRGLDISGV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSV 367
             + + +L   PE+ +HR GRTGRAG +G +  F+ P+N     ER+  E   ++
Sbjct: 309 SHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKN-----ERMLSEIETAI 358


>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
 gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae]
          Length = 472

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 8/335 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   F   
Sbjct: 65  EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V   V +GG+ +  +   L    HI+V TP
Sbjct: 122 ---FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATP 178

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +   ++ +RV ++S   Q  S +    + +    +D  +V +L     ++ I+F
Sbjct: 239 KVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T     R +  L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 299 CRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +++V++ +L  + +  +HR GRT RAG+ G+++
Sbjct: 359 PSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393


>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 486

 Score =  197 bits (501), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +     T  AE+   
Sbjct: 14  KAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFYAEHR-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV
Sbjct: 72  GAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVV 131

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT 
Sbjct: 132 ATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQRQNLLFSATF 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA +       + +A  N     +  +   V    +   + +++R H     +V
Sbjct: 192 SDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AARGID
Sbjct: 252 FTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLVATDIAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANV 365
           +  L  V++ +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE   
Sbjct: 312 IDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQ 371

Query: 366 SVV--WEPAPSVE 376
            V+  +EP P+ +
Sbjct: 372 EVIAGFEPDPNAK 384


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  TLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G+++ ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSV 375
             +EP+P V
Sbjct: 380 KGFEPSPVV 388


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 193/344 (56%), Gaps = 12/344 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+  G  + + +    
Sbjct: 610 FPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTL--GYLIPAFIHLRR 667

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            + +P   P  L +APTRELA Q+  E    + ++  V   C+ GG S   + R+L+ GA
Sbjct: 668 YQNNPMLGPTVLVLAPTRELASQIQDEA-VKFGRSSRVSCTCLYGGTSKGLQLRELERGA 726

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R+ LM+
Sbjct: 727 DIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNRQTLMY 786

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +AT    +T +A +  KD V+VNI S +      S   Y  V+  L D+   +  ILR  
Sbjct: 787 TATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPL-DKQRRLEQILRAQ 845

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G+K  I+FCST+    +  + +    F   ++ G+ SQ ER N L   R GRA + +A
Sbjct: 846 ERGSK-VIIFCSTKKMCDQLARDIGRS-FGAASIHGDKSQAERDNVLNQFRTGRAPILVA 903

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S
Sbjct: 904 TDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 947


>gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1]
 gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 123/337 (36%), Positives = 181/337 (53%), Gaps = 3/337 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E+GY   T +Q+  +   L  KD+L  AQTG+GKT  F L +   LL+     S  
Sbjct: 14  KAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPMLE-LLSRAKHTSGK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   +E           V  GGV ++ +   L+ G  IV+ TP
Sbjct: 73  HHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQLRKGIDIVIATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI  K +++S +  ++LDEAD MLD+GF +DI  IL+  PK+R+ L+FSAT S  
Sbjct: 133 GRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQRQNLLFSATYSDE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251
           I  L+         + +A  N   S+   +AV     +R   ++  L   G  K  +VF 
Sbjct: 193 IKKLSDRLLNSPTLIEVARRNTA-SETVKQAVYPVDKERKRELLTHLINDGKWKQVLVFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R +  L +      A+ G  SQ  R+ AL   +    RV +ATD+AARGID+ 
Sbjct: 252 RTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRVLVATDIAARGIDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ EL +  E+ +HR GRTGRAG +G ++ ++
Sbjct: 312 QLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLV 348


>gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan
           troglodytes]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 192/351 (54%), Gaps = 15/351 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAS 60
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L      +++
Sbjct: 7   SLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L++ D       P  L + PTRELA QV  +L  L A T       +GG + + + + 
Sbjct: 67  RALSKRD-------PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I  ++  KR
Sbjct: 120 LAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHKR 179

Query: 181 RM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
           R  LMFSAT+  + I  +A    K+   V I + + +H DI  R  L    D   A++  
Sbjct: 180 RQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLTR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ ++
Sbjct: 240 LLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
 gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
          Length = 472

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 185/335 (55%), Gaps = 8/335 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   F   
Sbjct: 65  EACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V   V +GG+ +  +   L    HI+V TP
Sbjct: 122 ---FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATP 178

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPRERRTYLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +   ++ +RV ++S   Q  S +    + +    +D  +V +L     ++ I+F
Sbjct: 239 KVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVYLLNEFVGQSCIIF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T     R +  L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 299 CRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +++V++ +L  + +  +HR GRT RAG+ G+++
Sbjct: 359 PSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAI 393


>gi|164655062|ref|XP_001728662.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
 gi|159102545|gb|EDP41448.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
          Length = 623

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 5/346 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  I +A+   GY   TS+Q   +   L  +D++  A+TGSGKT +F + + + ++A+ 
Sbjct: 234 IPGAILDAIEAMGYREPTSIQRQAIPIGLIPRDLIGLAETGSGKTASFVVPMLAYVMAQP 293

Query: 67  DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R +P      P  L +APTRELA+Q+  E     A+  + V   +GG  +  +   L +
Sbjct: 294 -RMAPGDVYMGPYGLILAPTRELALQIEAETRKFAARLQIQVVSLVGGRDLGEQAFHLND 352

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IV+ TPGRL D +    L +     +V+DEAD M+D+ + + + +ILDS P  R  +
Sbjct: 353 GAEIVIATPGRLQDCLERHMLVLGQCHYLVMDEADRMVDMNYEEALHYILDSLPTTRTTM 412

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242
           ++SAT+ P +  +A+ Y    V V I    +    I+     V +  DR   ++++L   
Sbjct: 413 LYSATMPPTVDKIARTYLTRPVTVTIGQAGQAVGTIEQCVEFVDSEEDRQQRLLHVLDSG 472

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A   IVF + +A+     K L    + V  L   LSQ +R  A+  +RDG   V   TD
Sbjct: 473 FAPPMIVFVNQKANADLVGKDLRRAGWNVAVLHSGLSQPQREAAIASLRDGYNEVLCCTD 532

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGIDLPD+ LV++ +  +   + +HR GRTGRAG+KG ++  +
Sbjct: 533 IGARGIDLPDVSLVVNYQFPTQFASYIHRIGRTGRAGKKGHAMSFV 578


>gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus]
 gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 819

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 396 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 455

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 456 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 515

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 516 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 575

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 576 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 635

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 636 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 695

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 696 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 755

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 756 RAGKSGVAITFL 767


>gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40]
 gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 398

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 193/345 (55%), Gaps = 2/345 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T++QE  + P L  +DVL  AQTG+GKT +F L +  T   + +R  
Sbjct: 12  ILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPILQTFKDKANR-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA+QV   +    A   +     +GGV +  ++  L  G  I+V 
Sbjct: 70  RAKRIKALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKLVEGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  + L+   L+ +VLDEAD MLD+GF  DI  I++  P++R+ L+FSAT+S
Sbjct: 130 TPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQSLLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK    +AV ++IA++ +    I    V V   ++   + +++  +G K A++F
Sbjct: 190 DKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTVDKHNKSALLTHLINENGWKQALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +   +  ++    SQ  R+  L   + G+    +AT +AARGID+
Sbjct: 250 IRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFLVATGIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            DL+ V++ +L  +  + +HR GRTGRAG  G +V +I  +  +R
Sbjct: 310 DDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKR 354


>gi|313763161|gb|EFS34525.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|313773199|gb|EFS39165.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
 gi|313793334|gb|EFS41392.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313801023|gb|EFS42291.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313808763|gb|EFS47217.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313810443|gb|EFS48157.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313816500|gb|EFS54214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313817944|gb|EFS55658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313819855|gb|EFS57569.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313823346|gb|EFS61060.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|313824820|gb|EFS62534.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|313828335|gb|EFS66049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830060|gb|EFS67774.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313832667|gb|EFS70381.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|313838024|gb|EFS75738.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314914409|gb|EFS78240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314917732|gb|EFS81563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314919541|gb|EFS83372.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314925849|gb|EFS89680.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314930132|gb|EFS93963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314957125|gb|EFT01229.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957731|gb|EFT01834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314960793|gb|EFT04894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314963467|gb|EFT07567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314969950|gb|EFT14048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314973091|gb|EFT17187.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|314975587|gb|EFT19682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|314979836|gb|EFT23930.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314984871|gb|EFT28963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|314988743|gb|EFT32834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315077196|gb|EFT49261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315083323|gb|EFT55299.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
 gi|315086904|gb|EFT58880.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|315089995|gb|EFT61971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
 gi|315096683|gb|EFT68659.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315097910|gb|EFT69886.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|315100675|gb|EFT72651.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
 gi|315109155|gb|EFT81131.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327325098|gb|EGE66904.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA3]
 gi|327325275|gb|EGE67080.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA2]
 gi|327444077|gb|EGE90731.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327449297|gb|EGE95951.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|327449475|gb|EGE96129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
 gi|327451498|gb|EGE98152.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
 gi|327451529|gb|EGE98183.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|327451811|gb|EGE98465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|328752028|gb|EGF65644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
 gi|328755440|gb|EGF69056.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
 gi|328756358|gb|EGF69974.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
 gi|328761308|gb|EGF74835.1| ATP-dependent RNA helicase [Propionibacterium acnes HL099PA1]
          Length = 491

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            IP+ +   +   G+   +++Q+  + P +  +D++  AQ+G+GKT  F +    TL   
Sbjct: 2   EIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIG---TLAKL 58

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +     +   L +APTRELA Q+ + +  L     + V  C+GG +V  + R LQ G 
Sbjct: 59  DPKLRECQS---LILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGV 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L +  ++   LDEADEML  GF+D I  I    P+  ++ +F
Sbjct: 116 HVVVGTPGRVYDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  + + + +D VR+ +  +      I    + V   + + + + ++      
Sbjct: 176 SATMPLDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTI 235

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI++C+TR  V    + + E  F V  + G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 236 TQAIIYCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLL 295

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 296 ARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAI 336


>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
 gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
          Length = 529

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 147 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 206

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 207 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 264

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 265 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 324

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 325 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 384

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 385 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 444

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 445 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 490


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 186/355 (52%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E           AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE------LLDCQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+S+  +  + +R    + R  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNVVIEELPA 407


>gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 447

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 186/339 (54%), Gaps = 10/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           L++   +  T +QE ++   L +K D++  A+TG+GKT AFGL L   +   ND      
Sbjct: 18  LNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAAFGLPLLQLIDVNND------ 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  A+ +APTREL  Q+   L      T  V +A   GG+ +  +   L+   HI+V TP
Sbjct: 72  AIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQIERLKEATHIIVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ + ++I  +   +LDEADEM+    ++ ++ I+   PK RR  +F+AT+   
Sbjct: 132 GRLADLVKREAIDIKSISYFILDEADEMVT-ALKEGLDSIIKEIPKARRTFLFTATLPGT 190

Query: 193 ITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +  L +NY     +++        H  ID++ V+VA  ++   +++ L     +  I+FC
Sbjct: 191 LKQLIQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEKLEVLLHFLNSKAGQRGIIFC 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+A+V++ +K LA + F   A+ G L+Q  R   +   RDG   + +ATD+AARGID+ 
Sbjct: 251 KTKAAVNKLSKNLAINKFSSGAIHGSLTQGIRDRIMGQFRDGYIDILVATDLAARGIDVK 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           DL  V++  L       +HRSGRT RAG  G+S+ +I Q
Sbjct: 311 DLSYVVNYHLPDTYGAYVHRSGRTARAGASGLSLTIIQQ 349


>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
           [Saccoglossus kowalevskii]
          Length = 446

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 192/355 (54%), Gaps = 10/355 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E   +  +   T +Q   +   L  KDV+  A+TGSGKT AF L +   LL    R 
Sbjct: 33  VLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQDLLEHPQRL 92

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  + E L +  G+  AV +GG+ +  +   L    H+VV
Sbjct: 93  ------FALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQLAKKPHVVV 146

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  ++SAT
Sbjct: 147 ATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRERRTYLYSAT 206

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   K+ V+V + ++ +    +    + +    +D  +V IL      + +
Sbjct: 207 MTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYILNELAGNSFM 266

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCST  +  R   +L       V L G++SQ +R   L   +     + IATDVA+RG+
Sbjct: 267 VFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILIATDVASRGL 326

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           D+P +++VI+ ++ ++ ++ +HR GRT RAG+ G ++  + Q    + +R E+L 
Sbjct: 327 DIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRIEQLI 381


>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 457

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 178/332 (53%), Gaps = 1/332 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY + T +Q   +   L  +D+L +AQTG+GKT  F L +   LL       
Sbjct: 12  IVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQKLLDAPKGVK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A + L + PTRELA QV   +      T +   V  GGV ++ + + L+ G  I+V 
Sbjct: 72  PNQARV-LVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLRRGVDILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      ++   L  ++LDEAD MLD+GF +DI  I+   PKKR+ LMFSAT S
Sbjct: 131 TPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKRQNLMFSATFS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   ++ V V++  +N     +    + V    + N ++++L        +VF
Sbjct: 191 DKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKINLLIDLLAKEKWHQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++  K L++      A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 251 SRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             L  VI+ +L +  EN +HR GRT RAG  G
Sbjct: 311 DQLPHVINFDLPNVAENYVHRIGRTARAGSDG 342


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 199/388 (51%), Gaps = 14/388 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + + + L+  G+V  T +Q   +   L+ +DVL  AQTG+GKT AF + +   + + 
Sbjct: 7   HISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPVIDRIHSY 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       L + PTRELA Q+G   + L   T V      GGV   R+ + LQ+G 
Sbjct: 67  KTS-KRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQIKRLQDGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGR+ D I    +N+ ++  +VLDEAD MLDLGF  DI  +     K+ + L F
Sbjct: 126 DILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVKRHQTLFF 185

Query: 186 SATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SATI+  I  LA    +  A+R+ I+ ++    ++ +  + V + D+   + N ++ + +
Sbjct: 186 SATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFFLENFIKENPS 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  TR    R  K +     +   + GE  Q  RS  +Q  ++    + IATDV+
Sbjct: 246 AKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEISILIATDVS 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FRE 362
           ARGID+P+++ VI+ +L    EN +HR GRTGR  +KG ++    +N + R + +  F  
Sbjct: 306 ARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERLDEIQTFIN 365

Query: 363 ANVSVVW----------EPAPSVEAIRE 380
             V VV           EP  S E +R+
Sbjct: 366 KKVEVVHVTKNDYAMVVEPEQSFEDVRD 393


>gi|167525611|ref|XP_001747140.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774435|gb|EDQ88064.1| predicted protein [Monosiga brevicollis MX1]
          Length = 545

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 198/358 (55%), Gaps = 10/358 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+   T++Q       ++ +D++  A TGSGKT+AF L     +       S  + P  
Sbjct: 145 KGFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPALQHVKGLGR--SKTNCPRV 202

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L ++PTRELA+Q+ +  +        + AVC+ GG S   +   L+ G  +V+ TPGRL 
Sbjct: 203 LVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTALRQGCELVIATPGRLV 262

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +    L++SH+  +VLDEAD MLD+GF  DI+ IL +   +R+ LMFSAT    +  +
Sbjct: 263 DFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQRQTLMFSATWPEEVRAI 322

Query: 197 AKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNA--IVFCS 252
           A NY K+ +RV + SE    + ++     +V   ++D  ++++LR H A KNA  ++F  
Sbjct: 323 AANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVLRKHPASKNAKVLIFAL 382

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +   +R    L    + VV + G+L+Q +R  AL+  + G + + IATDVAARG+D+  
Sbjct: 383 YKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSHILIATDVAARGLDVKG 442

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367
           + +VI+       E+ +HR GRTGRAG  G++     Q+ +  A  L    REA+V V
Sbjct: 443 VAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHAGALGNVLREADVEV 500


>gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
 gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
          Length = 523

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 222

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   ++   R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 223 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 282

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + TLA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L+    G+K  ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+
Sbjct: 403 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 461

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +  + 
Sbjct: 462 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 521

Query: 356 AERLFR 361
           A  L +
Sbjct: 522 ARELVK 527


>gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
 gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
          Length = 443

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 13/373 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF--SP 71
           A+ ++GY   T +Q+  +   L   D+L  AQTG+GKT  F L +   L    +++  + 
Sbjct: 15  AVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQRL---QNKYPGTA 71

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            S P AL + PTRELA QV   +    A      AV  GGVS++ +++ L  G  +VV T
Sbjct: 72  KSYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLIKGVDVVVAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ + +++S ++ +VLDEAD MLD+GF  DI  ++   PK+R+ L+FSAT S 
Sbjct: 132 PGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQRQTLLFSATFSN 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  + ++  ++ +  +N     +  R   V    +   +   +     +  ++F 
Sbjct: 192 EIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKRELLSQQIGEGNWQQVLIFT 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L++      A+ G  SQ  R+ AL   + G  R  +ATD+AARGID+ 
Sbjct: 252 RTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRALVATDIAARGIDID 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
            L  V++ EL +  E+ +HR GRT RAG++G ++ ++      + R  E+L   A +  V
Sbjct: 312 KLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLRDIEKLLGSA-IEKV 370

Query: 369 WEPA----PSVEA 377
           + P     PS++A
Sbjct: 371 YLPGFEIDPSIKA 383


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 174/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P S
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  I-RALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   + +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 56  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV++   PA
Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPA 404


>gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 507

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 125 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 184

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 185 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 242

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 243 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 302

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 303 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 362

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 363 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 422

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 423 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 468


>gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5
           [Macaca mulatta]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/401 (32%), Positives = 211/401 (52%), Gaps = 22/401 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q          KD++  A+TG+GKT +F + L   
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 248

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRK--LAVACFYGGTPYGGQIERM 306

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 307 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 366

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 367 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426

Query: 234 AIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            I +++R    +HG    I+FC T+      ++ ++       +L G++ Q++R   L+ 
Sbjct: 427 VIGDVIRVYSGFHG--RTIIFCETKKEAQELSQNVSIRQ-DAQSLHGDIPQKQREITLKG 483

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +    
Sbjct: 484 FRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 543

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
              + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 544 HKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 584


>gi|329575935|gb|EGG57456.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TX1467]
          Length = 457

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 161/277 (58%), Gaps = 1/277 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  HIVVGTPGRL 
Sbjct: 14  GLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPHIVVGTPGRLL 73

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FSAT+ PAI  +
Sbjct: 74  DHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFSATMPPAIKNI 133

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
              + K    V I ++      ID   V     ++ + +  +L     +  IVF  T+  
Sbjct: 134 GVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPELTIVFGRTKRR 193

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAARG+D+  +  V
Sbjct: 194 VDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAARGLDISGVTHV 253

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            + ++  +PE+ +HR GRTGRAG+ GMSV FV P  M
Sbjct: 254 YNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEM 290


>gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1]
          Length = 523

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484


>gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999]
          Length = 426

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 185/341 (54%), Gaps = 5/341 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I +AL+E  +   T +Q   L P + E D+   AQTG+GKT+AF +A    LL   
Sbjct: 16  IHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHYLLTHK 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R+ L NG  
Sbjct: 76  NS---EKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTLTNGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GR+ D+ +    +++HL+  VLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 133 IIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATERLSML 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  +   V I  E +  + +       +  D+   ++ +L     
Sbjct: 193 FSATLSYRVQELAYEHMNNPTHVQIEPEKKTATRVQEELFYPSDDDKIRLLLTLLENEWP 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VF +T+ S       L     +V  LSG++ Q++R + ++    G+  + +ATDVA
Sbjct: 253 EKAVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +  +  V + +L  + E+ +HR GRTGRAG+ G ++
Sbjct: 313 ARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAI 353


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     +   T +Q   + P L   DV+  AQTGSGKT AF + + + L  + 
Sbjct: 81  VPELI-QACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQ 139

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 140 QPY------YACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 193

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   KG ++ +LK +V+DEAD +LD+ F   ++ IL   P K R   +
Sbjct: 194 IIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTYL 253

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 254 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG 313

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDVA
Sbjct: 314 KTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 373

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 374 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 419


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 184/340 (54%), Gaps = 2/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   +L++  R
Sbjct: 10  EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ ++
Sbjct: 69  VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I +LAK    + V ++++  N     ++     V    +   +  +++ +  +  +
Sbjct: 188 FSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AARGI
Sbjct: 248 VFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/366 (34%), Positives = 192/366 (52%), Gaps = 10/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +  A+  +G+ + T++Q       L  KD++  A TGSGKT+++ L     + A+ 
Sbjct: 107 FPDYVLTAVKAQGFPSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPAIVHINAQ- 165

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+AL +APTRELAVQ+ +E     + + +      GGV   ++ RDL  GA 
Sbjct: 166 PLLKPGDGPVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQIRDLARGAE 225

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 226 IVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 285

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNAIVNILRY 241
           AT   ++  LA++Y  D ++VN+ S     S  + + V+  LS     DR    +     
Sbjct: 286 ATWPKSVQALARDYLHDYIQVNVGSLELAASH-NIKQVIEVLSEYEKRDRLTKYLEQASE 344

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF ST+ +    T  L    +  +A+ G+  Q+ER   LQ  R G++ + +AT
Sbjct: 345 DKTSKILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGKSPIMVAT 404

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARGID+  +  V++ ++  N E+ +HR GRTGRAG  G +V        R A+ L  
Sbjct: 405 DVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANARMADDLVP 464

Query: 360 -FREAN 364
             +EAN
Sbjct: 465 ILKEAN 470


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 189/358 (52%), Gaps = 9/358 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+ERG     ++QE  L   L   DV+  A+TG GKT AFG+ L   +        
Sbjct: 43  IVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQRISVTTTARP 102

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTG---VVVAVCIGGVSVHRERRDLQN 123
            + AP  L + PTREL +QV  +L    ++L A        V    GG +   +   LQ 
Sbjct: 103 LSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAYEPQIEALQT 162

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VV TPGRL D  +   L +S L  +VLDEADEMLDLGF  DIE +L   P  R+ +
Sbjct: 163 GADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLGQIPTDRQSM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALS-DRDNAIVNILRY 241
           +FSAT+   I TLA+ +    + +   A  +    D   + V  A + D+   I  IL+ 
Sbjct: 223 LFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHALDKVELISRILQA 282

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+ +  + T  L E  F V A+ G+L Q  R NAL+  R G   V +AT
Sbjct: 283 RGRGATMIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFRTGNVDVLVAT 342

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +   R E +
Sbjct: 343 DVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELHRWETI 400


>gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 406

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 190/370 (51%), Gaps = 7/370 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E LS  G    T +Q   +   L  KDVL  AQTG+GKT AFGL L    +    +  P 
Sbjct: 3   ERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQREPN 62

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S  + AL + PTRELA QV   L+     + + +    GG S++ ++++L+ GA I++ T
Sbjct: 63  SKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILIAT 122

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH   K L + + +A+VLDEAD MLD+GF  DI+ +L     +R+ L FSAT   
Sbjct: 123 PGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATFDS 182

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I   A    ++ V V +   N     ++     V    +   +  ++     +  +VF 
Sbjct: 183 KIKAFAHRMMQNPVEVQVTPSNSTADTVEQMVYPVDKKRKRELLAYLIGSRNWQQVLVFT 242

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       + L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARGID+ 
Sbjct: 243 RTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGIDIA 302

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVW 369
            LE V++ ++    E+ +HR GRTGRAG+ G +V ++  + Q   E + R  +  +   W
Sbjct: 303 QLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKRLPQEW 362

Query: 370 ----EPAPSV 375
               EP+P V
Sbjct: 363 LKGYEPSPVV 372


>gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 423

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 188/342 (54%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+   T +Q   L   L  KDV   AQTG+GKT AF LA    LL +
Sbjct: 15  NLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATMQYLLRD 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APTRELA+Q+ ++ + L   TG+   V  GG +  ++R  L+ G 
Sbjct: 75  LG-IEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GTPGRL D+ + +  +   ++ VVLDEAD M DLGF  DI +IL     P KR  +
Sbjct: 134 DILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPHKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +T LA  +  +   V   S+      I  R    A  ++   ++ +L+   
Sbjct: 194 LFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKERVYFPANEEKIPLLLALLKRLA 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+ +  +    L  + F+   LSG++ Q +R   L+  ++G   + +ATDV
Sbjct: 254 PQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  +PE+ +HR GRT RAG  G +V
Sbjct: 314 AARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAV 355


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 9/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +++DV+  AQ+G+GKT  F +A+   +    D   P     AL
Sbjct: 63  GFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNI----DETIPEVQ--AL 116

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV     IGG +V  ++R L++G H+VVGTPGR+ D 
Sbjct: 117 VMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVHVVVGTPGRVNDM 176

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L  +++K  VLDEADEML  GF++ I  +    P   ++++ SAT+   +  +  
Sbjct: 177 ITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDVQVVLLSATMPSEVLEVTN 236

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  D +R+ +  E      I  R   +    +   + ++        A++FC+TR  V 
Sbjct: 237 RFMNDPIRILVKREELTLEGI--RQFYIN-EWKFETLCDLYSTVNVTQAVIFCNTRRKVD 293

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                +++  + V  + GE+ Q ER   ++  R G +RV I TD+ ARGID+  + LVI+
Sbjct: 294 YLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 353

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +L SN EN +HR GR+GR GRKG+++  I +   R
Sbjct: 354 YDLPSNRENYIHRIGRSGRFGRKGVAINFITETDMR 389


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 201/369 (54%), Gaps = 22/369 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAP- 75
           GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   L  L   ++ +  +A  
Sbjct: 88  GYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQLSELQAKEKAAEKTASG 147

Query: 76  ----------LALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV   + ++  A   +     +GG +   + R L+ G
Sbjct: 148 KRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGAAYSGQIRALKKG 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DHI  + +N+S L  +VLDEAD MLD+GF DDI  IL+++P  R+ +M
Sbjct: 208 VQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAILEATPAHRQTIM 267

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT    +  +A+++ KD  R+NI  E    + ID +       D  N ++  L     
Sbjct: 268 SSATWDGPVGKIAESFTKDPERINIKVET---AHIDEKVYFCDNFDHKNKLLEQLICDPE 324

Query: 245 K-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AI+F +T+ S     + L +   +   L G+L Q +R+  +  +R G+  + +ATDV
Sbjct: 325 RGQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRSGKFDIVVATDV 384

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERL 359
           AARG+DLP++  V + +L    E+ +HR GR+GRAGR G+++ +  ++ +R+    A  L
Sbjct: 385 AARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAINLCSRDDRRQFGNIARYL 444

Query: 360 FREANVSVV 368
            R+ N + V
Sbjct: 445 KRDINEAQV 453


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 185/341 (54%), Gaps = 3/341 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 97  GFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNA 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G 
Sbjct: 156 QPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 215

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +
Sbjct: 216 EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYW 275

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHG 243
           SAT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+L     
Sbjct: 276 SATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMD 335

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDV
Sbjct: 336 GSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDV 395

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           AARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 396 AARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 436


>gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 2 [Canis familiaris]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus
           cuniculus]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 177/336 (52%), Gaps = 3/336 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +   LL   +R  
Sbjct: 20  IARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRLL--QNRIK 77

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           PAS     L ++PTREL+ Q+            +  A+ IGGV + R+ R L  G  ++V
Sbjct: 78  PASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQVRSLMGGVDVLV 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT+
Sbjct: 138 ATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATM 197

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA+   +D  RV +   +     I+ R + +  S +  A+  IL+      A+V
Sbjct: 198 PKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAALAQILKDDKVNQALV 257

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K LA       A+ G  SQ  R   L   R G  R  +ATD+AARGID
Sbjct: 258 FTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGID 317

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V++ +L + PE  +HR GRT RAG  G ++
Sbjct: 318 VDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAI 353


>gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 533

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 190/359 (52%), Gaps = 18/359 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           ++P  I   +++  +   T +Q A+L   L   D    AQTG+GKT  F + + +  L  
Sbjct: 122 DLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQFLRN 181

Query: 64  --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              E  R      P AL +APTRELA+Q+ +E   L   T        GG+   +++R L
Sbjct: 182 PAPEGRR---KGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRL 238

Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
                 IVV TPGRL D  R   L++S ++ +V+DEAD MLD+GF  D++ I+  +P K 
Sbjct: 239 TGEVIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKA 298

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT++  +T  A  + ++ V V I  E      ++ R ++  + ++   + N+
Sbjct: 299 QRQTMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNM 358

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        IVF + R    R T+ L  +      LSGE+ Q++R   L+  R+G+ RV 
Sbjct: 359 ITRQNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVL 418

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349
           +ATDVAARG+ +  +  V +  +  +PE+ +HR GRTGRAG  G+SV        F+IP
Sbjct: 419 VATDVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIP 477


>gi|318079420|ref|ZP_07986752.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 461

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 10/315 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96
           A+TG+GKT+ FGL L   +    D    R +P   + AP AL + PTREL  QV  +L+ 
Sbjct: 5   AKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
                 V V    GG +   +   L+ G  +VVGTPGRL D    + L++S ++A+VLDE
Sbjct: 65  AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS---EN 213
           ADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+  LA+ Y      +N  S   EN
Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDEN 184

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ +         D+   +  IL+  G    ++FC T+ + +  ++ L    F   A
Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR G
Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAGR G +V ++
Sbjct: 305 RTGRAGRSGTAVTLV 319


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 193/346 (55%), Gaps = 3/346 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E L  +G ++ T +Q   +   +  +DV+  A+TGSGKT AFGL +   LL E  
Sbjct: 10  PRLIAE-LKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    +A  AL +APTRELA Q+   L      T +   + +GG  +  + R L+ G  +
Sbjct: 69  KPEGKTA-RALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRKLERGVDL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +   K +VLDEAD+MLD+GF   +  I      +R+ ++FSA
Sbjct: 128 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  + K+ +RV + +  +    I+     VA + + + ++ ++  H  + A
Sbjct: 188 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+    +  K+LA   F   ++ G  SQ +R  A+   + G+ ++ +ATDVAARG
Sbjct: 248 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKILVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +D+P+++ + + +L +  EN +HR GRT RAG  GM++ F  P  M
Sbjct: 308 LDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEM 353


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 1/339 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++    + T +Q   +   L  +DV+  AQTG+GKT AFGL + +T++ + 
Sbjct: 4   LPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMRDQ 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P      L +APTRELA Q+   L    A T V + +  GG S++ +   L  G  
Sbjct: 64  TRPGPKQV-HGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGTD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  K + +   + +VLDEAD+MLDLGF   +  I    PK+R+ ++FS
Sbjct: 123 LLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A  Y  D VR+ +    +    I+     V    +   +V+ L  H  + 
Sbjct: 183 ATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLDLHRTEA 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  + L +  F   ++ G  SQ +R  AL+  R+G   V +ATDVAAR
Sbjct: 243 ALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+P +  V + +L +  +N +HR GRT RAGR G ++
Sbjct: 303 GIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAI 341


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 187/339 (55%), Gaps = 12/339 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 46  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      +  +   +A+   D   + + ++        A++FC+TR 
Sbjct: 220 KFMTDPVRILVKRDELTLEGL--KQYFIAIEKEDWKFDTLCDLYDTLTITQAVIFCNTRR 277

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + L
Sbjct: 278 KVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 337

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 338 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 196/362 (54%), Gaps = 17/362 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   GY  +T +Q+  +    R +DVL SAQTG+GKT AF + +   +L +  + +
Sbjct: 12  LQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPILQQMLNKPKKTT 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P + P AL + PTRELA Q+   +   YAK T + V    GGV +  +   L  G  IV+
Sbjct: 72  PGT-PRALILTPTRELAEQLATNIAN-YAKFTDISVTALYGGVKLGGQASKLSAGVDIVI 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +H+  K + +++++ VVLDEAD MLD+GF  D+  +L       + L+FSATI
Sbjct: 130 STPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAHQTLLFSATI 189

Query: 190 SPAITTLA----KNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYH 242
           SP +  LA    KN+Q+  A ++N A++  QH       V+  +S+ D       +L   
Sbjct: 190 SPTVNELAHKLLKNHQEIRATQLNSAADTVQH-------VMYPVSEEDKIRLFKTLLAEQ 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF ST+    +    L            + SQ  R  A+   +  + +V IAT+
Sbjct: 243 NWYQVLVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQVLIATE 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+ V++  L   PE+ +HR GRTGRAG++G ++  + +  +R  ER+ R 
Sbjct: 303 VAARGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIERL 362

Query: 363 AN 364
            N
Sbjct: 363 IN 364


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/327 (35%), Positives = 179/327 (54%), Gaps = 1/327 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 34  GMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 92

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 93  ILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 152

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++   R+  +FSAT+   I +LA 
Sbjct: 153 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQTALFSATMPKEIASLAG 212

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +   D VRV +A +    ++I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 213 SLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIVFTRTKHGAD 272

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    ++V A+ G  SQ  R  AL   RDG  R+ IATD+AARGID+P +  V++
Sbjct: 273 AVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGIDVPGISHVVN 332

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L   PE  +HR GRTGR G  G S+
Sbjct: 333 YDLPDEPETYVHRIGRTGRNGASGASI 359


>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 475

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 183/339 (53%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I +AL+E+GY   T +QE  +   L+  D++  AQTG+GKT AF +     L  + 
Sbjct: 8   INEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQNLKEKA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL + PTRELA+Q+    E       +   V  GGV+   + + L+NG  
Sbjct: 68  FDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVKALRNGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            ++ TPGRL D +    +++S ++  +LDEAD MLD+GF +D++ I+   PKK++ L+FS
Sbjct: 128 TLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKKKQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+++A+    +   V +   +     ++     V   ++   ++++L      +
Sbjct: 188 ATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLIDVLENKSFDS 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L       VA+ G+ SQ  R  AL   +DG   V +ATD+AAR
Sbjct: 248 VLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTINVMVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+ +L+ V++ EL   PE  +HR GRTGRAG  G ++
Sbjct: 308 GIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAI 346


>gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens]
 gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=100 kDa U5 snRNP-specific protein; AltName:
           Full=DEAD box protein 23; AltName: Full=PRP28 homolog;
           AltName: Full=U5-100kD
 gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
 gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|82523756|emb|CAI78756.1| probable ATP-dependent RNA helicase [uncultured gamma
           proteobacterium]
          Length = 505

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 191/327 (58%), Gaps = 10/327 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA---SAPLALAI 80
           T VQ+  +   L  +D+LVSA+TGSGKT+A+ + LA  +LA     +PA       AL +
Sbjct: 82  TEVQKLAVPAALAGRDLLVSAETGSGKTLAYLIPLAQKILA-----APAGTTQGTQALIL 136

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA QV + +  L AK+ +      GG     ++  L+    I+VGTPGRL +H R
Sbjct: 137 VPTRELARQVLKHIRQLLAKSPLKAQAITGGADFKYQKSQLRQDPEIIVGTPGRLLEHCR 196

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-AITTLAKN 199
               ++  L+ +VLDEAD MLD+GFR+D+  I D  P  R+ML+ SAT+S   +  +A  
Sbjct: 197 KLSTDLGRLQTLVLDEADRMLDMGFREDVLAIADFCPASRQMLLLSATLSHRGVGDIAAT 256

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + +   + +    + HS+I ++ +L    + +D  ++ +L+    +  +VF + R + +
Sbjct: 257 LRLNPQSIAVGQVRQPHSNISHQLILADNQTHKDQLLLALLQQGDYQRVLVFGNKRDTAA 316

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R  ++      +   L GEL+ +ER   +   ++G+  +  A+DVAARG+D+  ++LVI+
Sbjct: 317 RLHQLTQGQRLRSACLHGELTTEERKQVMHRFQEGKVNIVCASDVAARGLDIQGIDLVIN 376

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  + +N LHR+GRTGRAG+KG+++
Sbjct: 377 YDIPYSGDNYLHRTGRTGRAGQKGLAI 403


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score =  197 bits (500), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 184/340 (54%), Gaps = 2/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   +L++  R
Sbjct: 10  EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ ++
Sbjct: 69  VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I +LAK    + V ++++  N     ++     V    +   +  +++ +  +  +
Sbjct: 188 FSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AARGI
Sbjct: 248 VFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L + D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
 gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 198/370 (53%), Gaps = 7/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q+  +   L  KD+L SAQTG+GKT  F L +   L+ +N R +   
Sbjct: 44  AINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPILQKLV-DNPRGNNRR 102

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QV   ++       +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 103 PIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQMMKLRGGVDVLIATPG 162

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++  VLDEAD MLD+GF  DI  ++   PKKR+ L+FSAT S  I
Sbjct: 163 RLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPKKRQNLLFSATFSDEI 222

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     + V + +A  N     +     LV  + +   +  ++     +  +VF  T
Sbjct: 223 KQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKNRKAELLSFMIGRENWQQVLVFTRT 282

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 283 KHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEQL 342

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL +  E+ +HR GRTGRA   GM+V ++      + +  E+L +++   +   
Sbjct: 343 PYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDIEKLLKKSIPLMAIE 402

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 403 GYEPNPSIKA 412


>gi|207742162|ref|YP_002258554.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593550|emb|CAQ60477.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 471

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   
Sbjct: 23  PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDAR-- 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF       A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH
Sbjct: 80  RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+FS
Sbjct: 136 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L++   ++   V +  E    S I  R   V    R +A+  +L+++   +
Sbjct: 196 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVS 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 255 TLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++
Sbjct: 315 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 353


>gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Callithrix jacchus]
          Length = 820

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 187/343 (54%), Gaps = 13/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L  +G    T +QE  ++      DV+  AQTG+GKT AF       LL   +  SP 
Sbjct: 14  KVLKSQGITVPTPIQEKSMDLIKNGNDVIAEAQTGTGKTFAF-------LLPMFENMSPN 66

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              +  L + PTRELA+Q+  E   L     + +    GG  +  + + L+   H+++ T
Sbjct: 67  INKIQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLKKLKGNIHLIIAT 126

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI+   +NI  LK +VLDEAD+ML +GF++++E I+    KK ++L FSAT++ 
Sbjct: 127 PGRLLDHIKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKKTQILCFSATMNS 186

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LA  Y K+   V+I +E     +I  +  +V  +DR   +A+  +L    A  AI+
Sbjct: 187 QVKKLAYRYMKEPNVVSIQNEEVTLKNI--KQAVVETTDRRKQDALCKVLDEDNAFMAII 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V      L +  +    + G+L+Q +R   ++  ++   +  IATDVAARG+D
Sbjct: 245 FCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLIATDVAARGLD 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  +  V   ++  N E+ +HR GRTGRAG KG + +F+ P++
Sbjct: 305 ISGVTHVYSYDIPENTESYIHRIGRTGRAGEKGETCLFIDPKD 347


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 198/374 (52%), Gaps = 16/374 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L L   L+        A 
Sbjct: 18  AVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLLQLLMCSPSHH--AG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   +        +   V  GGV+++ + + L+    I+V TPG
Sbjct: 76  RPRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKALRAPVDILVATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+  K +++S ++ +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S  I
Sbjct: 136 RLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPAQRQNLLFSATFSDEI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N  +  +  +  LV    +   +++++R       +VF  T
Sbjct: 196 KALADKLLDNPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHLIREQNWFQVLVFTRT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL   + G  +V +ATD+AARG+D+  L
Sbjct: 256 KHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVLVATDIAARGLDIDQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLFR--------- 361
             V++ EL + PE+ +HR GRTGRAG  G  +S+  + + +  R  E+L +         
Sbjct: 316 PHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRDIEKLIKMSIERFTVP 375

Query: 362 --EANVSVVWEPAP 373
             EA+++V  EP P
Sbjct: 376 GFEADLNVKPEPIP 389


>gi|83748492|ref|ZP_00945513.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
 gi|83724796|gb|EAP71953.1| Hypothetical Protein RRSL_01624 [Ralstonia solanacearum UW551]
          Length = 499

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 9/339 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A   
Sbjct: 51  PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDAR-- 107

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           RF       A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH
Sbjct: 108 RFDVQ----AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+FS
Sbjct: 164 VVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L++   ++   V +  E    S I  R   V    R +A+  +L+++   +
Sbjct: 224 ATYPDGIAKLSRQILRNPKEVKL-EERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVS 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 283 TLAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++
Sbjct: 343 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWAL 381


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 7/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+++ GY + T VQ A +   L  +DVL +AQTG+GKT AF L   + L          R
Sbjct: 53  AVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMNNLPHVPRGRARGR 112

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A  PL L + PTRELA Q+      +   TG      +GGVS + +R  L+ G  I+
Sbjct: 113 VA-AQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKRGCDIL 171

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I     ++  ++ +VLDEAD MLD+GF   +  I+  +   R+ L+FSAT
Sbjct: 172 IATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDRQTLLFSAT 231

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +         +   D  RV IA        ++   + V+L  ++  + ++L+  GA  AI
Sbjct: 232 LDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLASVLKREGASRAI 291

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC T+      ++ LA       A+ G+ SQ +R  AL+  R G   V +ATDV ARGI
Sbjct: 292 VFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECDVLVATDVLARGI 351

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           D+ D+  V++ ++  +P + +HR GRTGRAG  G S+ FV P ++
Sbjct: 352 DISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDV 396


>gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2]
          Length = 523

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 201 PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 258

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 259 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 318

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 319 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 378

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 379 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 438

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 439 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 484


>gi|120403427|ref|YP_953256.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956245|gb|ABM13250.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 443

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 186/362 (51%), Gaps = 4/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + ++LS+RG      +Q A L   L  +DVL   +TGSGKT+AF + L + L   
Sbjct: 10  GVPAPLVQSLSQRGITEPFPIQAATLPDALAGRDVLGRGKTGSGKTLAFSIPLVTAL--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S  S P  L +APTRELA Q+   L+ L A  G+ +    GGVS  R+   L+ G 
Sbjct: 67  TGRRSQPSRPSGLVLAPTRELATQITATLQPLAAANGLRITTIFGGVSQSRQVAALRAGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +  K +++  +   VLDEAD M DLGF   +  IL ++P+  + L+F
Sbjct: 127 DIVVACPGRLEDLMGQKLISLQDVTTTVLDEADHMADLGFLPGVTRILAATPRGGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  ++       + + +    V        +V+ L   G  
Sbjct: 187 SATLDNGVDKLVQRFLNDPVLHSVNEAAEAPAQMTHHVFHVGGVQEKKDLVHRL-ASGTG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  K L +     V L G LSQ  R   L     G ARV +ATD+AA
Sbjct: 246 RRILFMRTKHQARKLAKQLTDAGVPSVDLHGNLSQPARERNLAAFSSGEARVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L R A +
Sbjct: 306 RGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLLRRAGI 365

Query: 366 SV 367
           +V
Sbjct: 366 TV 367


>gi|134102389|ref|YP_001108050.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915012|emb|CAM05125.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 496

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/374 (33%), Positives = 191/374 (51%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL + G      +Q A +   L  +DVL   QTGSGKT+AFGL L    LA 
Sbjct: 21  GLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL----LAM 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P  L + PTRELA QV   L+ L    G+ V   +GG+S  R+   L+ G 
Sbjct: 77  QGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGV 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+R     +S ++   LDEAD+M D+GF   +  +LD  P   + L+F
Sbjct: 137 DVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V  ++A        +D+  +LV    + + +  I    G  
Sbjct: 197 SATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARIGAREG-- 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R T+ L     +  AL G  +Q  RS  L+  R G     +AT+VAA
Sbjct: 255 RTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H E  ++P++ LHR+GRT RAG  G  V ++  + +R    +  +A V
Sbjct: 315 RGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGV 374

Query: 366 -SVVWEPAPSVEAI 378
            +   + AP+ E +
Sbjct: 375 EATATKVAPADEEL 388


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 185/344 (53%), Gaps = 14/344 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L L   L     +   A
Sbjct: 14  EAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIERLSRGRAK---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L IAPTRELA Q     E       + +A+ IGGV+   +   L  GA +++ TP
Sbjct: 71  RMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILNKGADVLIATP 130

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATI 189
           GRL DH  RGK L ++ ++ +V+DEAD MLD+GF  D+E I    P   +R+ L FSAT+
Sbjct: 131 GRLLDHFGRGK-LLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRRQTLFFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGA 244
              I +L   + +D  RV ++   +  ++I    +++ L+D        A+   +   G 
Sbjct: 190 PKEIQSLVDRFLRDPERVEVSRPAQTGANITQ--LMIRLTDNSAKAKRLALRQAMSREGV 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KN I+F + +  V    + L  H F    + G+L Q  R+  L   + G  R  +A+DVA
Sbjct: 248 KNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFLVASDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+PD+  V + ++  + ++ +HR GRTGRAG+ G SV + 
Sbjct: 308 ARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIF 351


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 201/382 (52%), Gaps = 23/382 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +GEAL++      YV  T VQ   +   L  KD++  AQTGSGKT AF   + S ++   
Sbjct: 170 LGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPIISGIMTGQ 229

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A+  R +    PLAL ++PTREL+ Q+  E      +TGV V V  GG  ++++ R+L+
Sbjct: 230 FAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELE 289

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++      P 
Sbjct: 290 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 349

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++    + + +         I  R   V  SD+ + ++++
Sbjct: 350 VRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 409

Query: 239 LRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L    A  A       +VF  T+         L  + F    + G+ +QQER +AL+  +
Sbjct: 410 LHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFK 469

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N
Sbjct: 470 SGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNEN 529

Query: 352 ---MQRRAERLFREANVSV-VW 369
              + R    L +EAN  V  W
Sbjct: 530 NSSLARPLADLMQEANQEVPAW 551


>gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
 gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
          Length = 451

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 194/370 (52%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GYV  T +Q+  +   ++ +D++ SAQTG+GKT  F L L   L+ +        
Sbjct: 15  AVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKEPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIA 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 137 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 195

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   ++   R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 196 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 255

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 256 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 315

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + TLA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 316 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 375

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L+    G+K  ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+
Sbjct: 376 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 434

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +  + 
Sbjct: 435 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 494

Query: 356 AERLFR 361
           A  L +
Sbjct: 495 ARELVK 500


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 189/352 (53%), Gaps = 7/352 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I + L   G    T VQ   ++     +DV+V +QTG+GKT+AF L +   +  + 
Sbjct: 8   ISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLPIFENISTKV 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D      A  AL + PTRELA+Q+  E   L     + +    GG  +  + + L+ G H
Sbjct: 68  D------AVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLKTGIH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  VLDEAD+ML +GF++D+E I+  + KKR+ L FS
Sbjct: 122 LIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+  +  LA  Y K+ + V I  E      I  + V      + +A+  +L       
Sbjct: 182 ATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCTVLNQDNPYM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V      L +       L  ++ Q +R   ++  R+G  +  IATDVA+R
Sbjct: 242 AIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLIATDVASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           G+D+  +  + + ++  + E+ +HR GRTGRAG +G + +F+ P++  R  E
Sbjct: 302 GLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEE 353


>gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
 gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
          Length = 471

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA++++GY   + +Q   +   +  KDV+ +AQTG+GKT AF L +   L +   R  
Sbjct: 18  ILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLERL-SNGPRVK 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P     AL + PTRELA QV   +  LYAK   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 77  PNQV-RALVLTPTRELAAQVAESVA-LYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLV 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ +VLDEAD MLD+GF  DI  +L + PK+R+ L+FSAT 
Sbjct: 135 ATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQNLLFSATF 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     +      V  S + N +  +L+ +     +V
Sbjct: 195 SDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQVLV 254

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R T  L     +  A+ G  SQ  R+ AL   +    +V +ATD+AARG+D
Sbjct: 255 FTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAARGLD 314

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ EL    E+ +HR GRTGRAG +G ++ ++
Sbjct: 315 IEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLV 353


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 45  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 99  VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 159 IRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 219 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 278

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 279 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 338

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 339 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 375


>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
          Length = 407

 Score =  197 bits (500), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 189/343 (55%), Gaps = 7/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+ RG  +  ++QE  L   L   D++  A+TG GKT  FG+ L   +    D   
Sbjct: 7   ICDALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFDAADVPE 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              +P AL + PTRELAVQV  +L    A+  V +A  +GG     ++  L+ G  +VVG
Sbjct: 67  LDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAGVDVVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKKRRMLMFSA 187
           TPGR+ D  + K L +  +  +VLDEADEMLDLGF  D+E IL +   SP +   ++FSA
Sbjct: 127 TPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPHQ--TMLFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAK 245
           T+  AI  LA+ +    V +   +E+   +    + ++      D+   +  IL+     
Sbjct: 185 TMPGAIVRLARTFMNRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQVPERG 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ + ++  + LA+  F V A+ G+L+QQ R  AL   RDG   + +ATDVA+
Sbjct: 245 RTLVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVATDVAS 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+  VI+ ++  +    +HR GRTGRAG  G ++ ++
Sbjct: 305 RGIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLV 347


>gi|327405104|ref|YP_004345942.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320612|gb|AEA45104.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 367

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 194/358 (54%), Gaps = 11/358 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           P++I   L+E G+   T +QE      + + +D +  A TGSGKT+A+G+ L   + A++
Sbjct: 9   PKLISR-LAELGFSEPTPIQEHAWKYLIEKHQDYVGQAHTGSGKTIAYGVPLLQRIDAKD 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
                     A+ + PTREL VQ  + L  L        +   + G  +  ++R+LQ   
Sbjct: 68  KDVQ------AVILVPTRELVVQTTKALYKLSKNLDKFFIQSIVKGDDIEEQKRNLQRPT 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL + IR K +++  +K +VLDEADE+   GF  +I+ IL  +    +  +F
Sbjct: 122 HVLVATPGRLLELIRLKAVSLRRMKTIVLDEADELYAKGFMKEIDKILAETNDFHKKWLF 181

Query: 186 SATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SATI   +T   KN   +DA +  IA++   +  I+++ V     D+   +++ L     
Sbjct: 182 SATIHGELTKWIKNTLHRDAPQAIIATKKVMNPKIEHQYVECQKEDKTMLLLDFLTTMKK 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+  V    + L  H  +V  + GE+  +ER  A++M      +  IATD+ 
Sbjct: 242 GRGIVFCRTKGDVEHVARFLRTHEKKVTEIYGEMFPKEREKAMRMFSQEHTQYLIATDIT 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           ARG+D PDL  V+H +L  +P+   HRSGRT RAG++G+S+ ++ + ++R+  R  +E
Sbjct: 302 ARGMDFPDLAFVVHYQLPDDPDYYTHRSGRTARAGKRGISLSLV-EAVERKKLRYIQE 358


>gi|294658482|ref|XP_460822.2| DEHA2F10538p [Debaryomyces hansenii CBS767]
 gi|218511820|sp|Q6BLU9|PRP28_DEBHA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|202953164|emb|CAG89165.2| DEHA2F10538p [Debaryomyces hansenii]
          Length = 580

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 190/368 (51%), Gaps = 38/368 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST--------LLAENDRFS 70
           GY + T +Q A +   L  +D++  A+TGSGKT+AF L L S         LL E+ + S
Sbjct: 174 GYDSPTPIQRASIPLALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQES 233

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + PL L +APTRELA+Q+ +E +    K  + V   IGG         ++NG HIVV 
Sbjct: 234 NFNKPLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVA 293

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------- 177
           TPGRL D +    +N+S+     +DEAD+M+D+GF   ++ IL+  P             
Sbjct: 294 TPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGKI 353

Query: 178 ---KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              KKR  LMF+ATISP I  + KNY      + I +      +I+ +          + 
Sbjct: 354 FNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSDE 413

Query: 235 IVN---------ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQ 280
           I++         ILR+H  +N     I+F + + +       L+   F     + G  SQ
Sbjct: 414 ILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQ 473

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R  A+   R+G+ ++ IATDVAARGID+P++ LV++ +++   +  +HR GRTGRAG 
Sbjct: 474 EARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGN 533

Query: 341 KGMSVFVI 348
           KG S   I
Sbjct: 534 KGTSCTFI 541


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 189/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF   ++ I +++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRRQTLM 184

Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           FSAT+  + I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRLLQDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF +TR    R    L+   F   ALSG+L Q  R+  +     G+ ++ + TD
Sbjct: 245 THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQILVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
 gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
          Length = 421

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  +  I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +   
Sbjct: 3   FEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   L
Sbjct: 63  LYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR+
Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L  
Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IAT
Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++
Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 184/361 (50%), Gaps = 16/361 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  + S ++ 
Sbjct: 16  LDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPQVS-SNC 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L + PTRELA QV +      A   +   V  GGVS++ +   L+ G  ++V TPGR
Sbjct: 75  VRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMKLRKGLDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    L+ +VLDEAD MLDLGF  +++ +  + PKKR+ L+FSAT S  I 
Sbjct: 135 LLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKRQTLLFSATFSDEIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L+     + VR+ I+  N     I   A+ V    +    +++L+ H     +VF  TR
Sbjct: 195 ALSTTLLDNPVRIEISPRNTPVKTIKQWAIPVDKKRKPELFLHLLKKHRWGQVLVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L     +  A+ G+  Q  R  AL+  +    ++ +ATDVAARG+D+ DL 
Sbjct: 255 RGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQILVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV---------------FVIPQNMQRRAERL 359
            V++ +L    E+ +HR GRTGRAG  GM+V                +  QN+QR AE+ 
Sbjct: 315 QVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLAAIEMLTGQNLQRNAEQG 374

Query: 360 F 360
           F
Sbjct: 375 F 375


>gi|108711873|gb|ABF99668.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 596

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 180/317 (56%), Gaps = 8/317 (2%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  L +APTRELA QV +E++    K   +  VC+ GGVS + ++  L  G  +VVGTPG
Sbjct: 20  PRVLVLAPTRELAKQVEKEIKESAPK---LSTVCVYGGVSYNVQQNALSRGVDVVVGTPG 76

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++FSAT+   +
Sbjct: 77  RIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWV 136

Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVF 250
             L++ Y  + + +++  +  +     I   A+ +  + +   + +++  Y      IVF
Sbjct: 137 KKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVF 196

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+      +  L   +    AL G++SQ +R   L   R G+  V +ATDVAARG+D+
Sbjct: 197 TKTKRDADEVSLALTNSIASE-ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 255

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L R+      + 
Sbjct: 256 PNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFI 315

Query: 371 PAPSVEAIRERDAQRIL 387
             P++E + E  A+ ++
Sbjct: 316 SPPAIEDVLESSAEHVI 332


>gi|282855131|ref|ZP_06264463.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282581719|gb|EFB87104.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 700

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + 
Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L
Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    G
Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDV
Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A
Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587

Query: 364 NVSVV 368
            V  V
Sbjct: 588 GVKPV 592


>gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7]
          Length = 421

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  +  I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +   
Sbjct: 3   FEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   L
Sbjct: 63  LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR+
Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L  
Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IAT
Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++
Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344


>gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 673

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 133/377 (35%), Positives = 209/377 (55%), Gaps = 10/377 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++  G+   + +QE  + P L  +DV+  +QTGSGKT+AF + +   +    DR  
Sbjct: 56  ILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIPVVQKI-DPRDR-- 112

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV  E+  L   K G+      GG +  R+ R L++GA IVV
Sbjct: 113 ---GVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQIRGLRDGAQIVV 169

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D +    L +  L+ +V DEADEMLD+GFR+DI+ ++   P+ R+ L FSAT+
Sbjct: 170 GTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPENRQTLFFSATL 229

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I  L ++Y K+A  + I  +      I+ R   V    +   +  +L     + AIV
Sbjct: 230 AGPIRHLVESYTKNAALITIEHKALTVPTIEQRYYEVNSRSKIEVLCRLLDIENPRLAIV 289

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+ +V   T  L    + V  L G+L+Q  R   ++  R G   V  ATDVAARG+D
Sbjct: 290 FANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVLAATDVAARGLD 349

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D++LV++ +L  + E+ +HR GRTGRAGR G ++ ++        +R+ R A V++  
Sbjct: 350 VDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQRIQRYAKVNIAR 409

Query: 370 EPAPSVEAIRERDAQRI 386
              P+ E +   D +R+
Sbjct: 410 HKVPTREEV---DGKRV 423


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/375 (33%), Positives = 211/375 (56%), Gaps = 9/375 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +LS  G+   T +Q   +   +  KD+L S++TGSGKT+A+ L     +L    R     
Sbjct: 15  SLSHLGFTETTEIQAKAVPIAVAGKDLLASSKTGSGKTLAYLLPAMQRVL--KTRALTKR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  +L  L + T +   +  GG + + + + L    H VVGTPG
Sbjct: 73  DPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTLVSGGENFNDQVKALDKDPHFVVGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           R+ DH++   L++  L+ ++LDEAD MLDLGF + ++ +  ++  + R+ L+FSAT+  A
Sbjct: 133 RIVDHLKKGLLHLEGLELLILDEADRMLDLGFAEQLKAVNSAANHRLRQTLLFSATLGHA 192

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
            +   A    K  VR+ I  EN+QHS+I  R  L   L+ ++  + + ++    K AI+F
Sbjct: 193 EVNEFASELLKAPVRIAIGEENQQHSEISQRFYLADNLNQKEKLLFHFIKNEEIKQAIIF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR    R +  L+E  +  +AL G+L+Q  R++ +     G+A++ + TD+A+RG+DL
Sbjct: 253 TATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQLLVTTDIASRGLDL 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ---NMQRRAERLFREANVS 366
            ++  VI+ ++  + E  +HR GRTGRAG KG ++ +I P+   N ++  E + R+   +
Sbjct: 313 LNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKDWVNFKKVEEFVQRQLTFN 372

Query: 367 VVWEPAPSVEAIRER 381
            V    P  + I E+
Sbjct: 373 RVDGIKPQFKGIVEK 387


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 196/358 (54%), Gaps = 8/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L    ++  T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   DLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    PA+A  A+ +APTRELA Q+ +++E   +    + V V     G++  +++R ++
Sbjct: 64  SKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGME 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + 
Sbjct: 124 MGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I TLA+   K+   V IA  +R    I   A +     +   + ++    
Sbjct: 184 IMFSATMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDMQKLRILEDLFSKS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F S++  V      L    F V A+  +L Q +R   ++  ++GR  + +ATD
Sbjct: 243 RPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           V +RGID+ D++LVI+ ++  +PE+ +HR GRT R    +G+++  I    Q + +R+
Sbjct: 303 VVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQFKRI 360


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 181/356 (50%), Gaps = 29/356 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76
           GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L   D  S    P 
Sbjct: 322 GYTEPTPIQRAAIPIALQGRDLIGVAVTGSGKTAAFLLPLLVYIKELPPLDEISKNDGPY 381

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL +APTRELA Q+  E        G  V   +GG S+  +   L+NGA IVV TPGRL 
Sbjct: 382 ALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQAYALRNGAEIVVATPGRLV 441

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------------- 177
           D I  + L +S    V++DEAD M+DLGF D +  ILD+ P                   
Sbjct: 442 DCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPTANEKPDTDEAEDARAMTQ 501

Query: 178 ------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                 + R  +M++AT+ P +  +AK Y +    V I +       ++ R   V+  DR
Sbjct: 502 YLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVGEAVETVEQRVEFVSGEDR 561

Query: 232 DNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
               +  +   G  A   IVF + + +     K + +  F  V L G  +Q +R  ALQ 
Sbjct: 562 RKKRLQEILQSGQFAAPIIVFVNIKRNCEMVAKDVRQMGFTTVTLHGSKTQDQREAALQA 621

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +R G+A V +ATD+A RGID+ D+ LVI+  ++++ E   HR GRTGRAG+ G+++
Sbjct: 622 LRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHRIGRTGRAGKSGVAI 677


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   
Sbjct: 94  ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 153

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  
Sbjct: 154 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 212

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +    +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FS
Sbjct: 213 VLIATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 272

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++
Sbjct: 273 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 332

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AAR
Sbjct: 333 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 392

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362
           GID+P +  V++ +L   PE  +HR GRTGR G  G S+ +      ++  R  ER+ R 
Sbjct: 393 GIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 452

Query: 363 ----ANVSVVWEPAP 373
                +  V   PAP
Sbjct: 453 KLSIKDAPVKLAPAP 467


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY + T +Q+  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAI 248
             +   +  +  R+ ++      + +    V  + S   +    +LR+        KNAI
Sbjct: 192 RRVTDAFLHNPQRIEVSRPATTAATVTQSQV--SCSREPHEKRELLRHLLREAKELKNAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ +  V+   K L +H F V AL G++ Q  R+ +L   R G   + +A+DVAARG+
Sbjct: 250 IFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P++  V++ ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 310 DIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIV 349


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVQCQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  N  VV E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYDIQRFYN--VVIEELPS 407


>gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
 gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 6/345 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+S+  +     VQ  +L   L  KD    AQTG+GK+ AF + + + L+  
Sbjct: 102 DLPLGLMHAISDENFQYCMPVQAEVLPHTLMGKDATAKAQTGTGKSAAFLVTIIARLMKN 161

Query: 66  NDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R       P AL I PTREL +Q+ ++ + L   T +      GG+   R++  L + 
Sbjct: 162 PTRGKREKGTPRALIIEPTRELVLQIEKDAKALTLYTPLRTVSVFGGMDYKRQQDQLAS- 220

Query: 125 AH--IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKR 180
           AH  I+  TPGRL D +R K +N+  ++ +V+DEAD +LD+GF  D+  I+ ++P  K+R
Sbjct: 221 AHVDIIAATPGRLMDFMRQKLINLGKIEILVIDEADRLLDMGFIPDMRNIIYNTPHKKER 280

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  +A  +  D   V I  +      I+ +  +V    +   + N++ 
Sbjct: 281 QTLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQKFPLLYNLIS 340

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  I+F + R++  R  + L +       LSGE+SQ++R   L   R+G+ RV +A
Sbjct: 341 GEKLERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFRNGKVRVLVA 400

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+ +  +  VI+ +L  +PE+ +HR GRTGRAG +G+SV
Sbjct: 401 TDVAARGLHIEGVSHVINYDLPQDPEHYIHRIGRTGRAGAEGISV 445


>gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23
           (DEAD box protein 23) (100 kDa U5 snRNP-specific
           protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus
           caballus]
          Length = 820

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 190/344 (55%), Gaps = 15/344 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67
           ++L   G    T +QE  L   L  KD++ S++TGSGKT+AF L      +++  L++ D
Sbjct: 25  DSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQRIISTKALSKRD 84

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTRELA QV  +L  L A T       +GG + + + + L    H 
Sbjct: 85  -------PRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSREPHF 137

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFS 186
           +V TPGR+ DH++ + L+++ L+ ++LDEAD MLDLGF   +  I  ++  KRR  LMFS
Sbjct: 138 IVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQTLMFS 197

Query: 187 ATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244
           AT+    I  +A    K    + I +   +H+DI  R +LV   D   A++ ++L     
Sbjct: 198 ATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVLTNETN 257

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F +TR    R   +LA+  F   ALSG L+Q  R+  +     G+ ++ + TDVA
Sbjct: 258 KQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVTTDVA 317

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG +V ++
Sbjct: 318 SRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 361


>gi|68465332|ref|XP_723365.1| hypothetical protein CaO19.12334 [Candida albicans SC5314]
 gi|46445394|gb|EAL04663.1| hypothetical protein CaO19.12334 [Candida albicans SC5314]
          Length = 564

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 185/318 (58%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + ++   +  + +     L I+PTRELA+Q+   L
Sbjct: 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS----VLCISPTRELALQIYDNL 243

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L A +GV      GGVS   + R L+  A++VV TPGRL D I    +N+  +  +VL
Sbjct: 244 IELTADSGVNCVAVYGGVSKDDQIRKLKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 302

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++S  +R+ LMF+AT    +  LA N+    V+V +   +
Sbjct: 303 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 362

Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266
              ++     V+  ++  D++  ++ +LR + A  +     ++F   +   SR    L  
Sbjct: 363 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 422

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + F V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P++++VI+       E
Sbjct: 423 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 482

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG KG +
Sbjct: 483 DYVHRIGRTGRAGAKGTA 500


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 194/365 (53%), Gaps = 10/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + ++G+   T++Q       L  +DV+  A TGSGKT+++ L     + A+ 
Sbjct: 123 FPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHINAQ- 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              S    P+ L +APTRELAVQ+ +E    + K+  +   C+ GGV   ++ RDL  G 
Sbjct: 182 PMLSHGDGPIVLVLAPTRELAVQIQQECS-KFGKSSKIRNTCVYGGVPRGQQIRDLARGV 240

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 241 EIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 300

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA +Y KD ++VNI S   +  H+      V      RD  + ++  +  
Sbjct: 301 SATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVME 360

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     ++F  T+      TK L +  +  +A+ G+  QQER   L   R G++ + +AT
Sbjct: 361 NKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGKSPIMVAT 420

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RGID+  +  VI+ +  SN E+ +HR GRTGRAG KG +     ++ +++A  L  
Sbjct: 421 DVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLV 480

Query: 360 -FREA 363
             REA
Sbjct: 481 ILREA 485


>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 451

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 194/370 (52%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GYV  T +Q+  +   ++ +D++ SAQTG+GKT  F L L   L+ +        
Sbjct: 15  AVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKEPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKEIPRIAIA 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
            LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + +
Sbjct: 20  TLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQRETNS 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D + V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPIEVQVTPSNSTAETVQQIVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSV 375
             +EP+P V
Sbjct: 380 KGFEPSPVV 388


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 184/352 (52%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+AF L + +    E  
Sbjct: 147 PEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPMITIAFQEEI 206

Query: 68  RF--SPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERR 119
               +P   P  L I P+RELA Q    +E     T       +   +C+GGV +  +  
Sbjct: 207 MMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVGGVDMRSQLE 266

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  I      +
Sbjct: 267 VVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREIFSYFKAQ 326

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   +   AK+     V VN++     + D+      V   D+   ++  L
Sbjct: 327 RQTLLFSATMPTKVQNFAKSALVKPVIVNVSRAGAANLDVIQEIEYVKQEDKTAYLLKCL 386

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++FC ++A V +  + L     +VVA+ G   Q+ER  A+   + G+  V I
Sbjct: 387 E-KTPPQVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISSFKSGKKDVLI 445

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDV ++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 446 ATDVVSKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 497


>gi|309778667|ref|ZP_07673444.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
 gi|308922582|gb|EFP68202.1| ATP-independent RNA helicase DbpA [Ralstonia sp. 5_7_47FAA]
          Length = 471

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 192/356 (53%), Gaps = 8/356 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A +        
Sbjct: 29  LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLARLDARSFDVQ---- 84

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH++VGTPG
Sbjct: 85  --AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAHVIVGTPG 142

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P  R+ L+FSAT    I
Sbjct: 143 RIMDHLERGNLGLGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTLLFSATYPEGI 202

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++   ++   V +  E    S I  R   V  S R +A+  +LR++   + + FC+T
Sbjct: 203 AKLSQRILRNPKEVKL-EERHDDSKIRQRFYEVTDSQRLHAVGQLLRHYRPVSTLAFCNT 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL       +AL GEL Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 262 KQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQL 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           E VI+ +++ +PE  +HR GRTGRA   G ++ +   +   R   + +     V W
Sbjct: 322 EAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIEQALGREVEW 377


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 186/341 (54%), Gaps = 4/341 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   +  +G+   T++Q       L  +DV+  AQTGSGKT++F L  A   +   
Sbjct: 68  FPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALP-AMLHINAQ 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+AL +APTRELAVQ+ +E     + + +      GG     + RDLQ G  
Sbjct: 127 PLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVE 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 187 VVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++ KD ++VNI S E   + +I     + +  ++ N ++  L    ++
Sbjct: 247 ATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHLDQISSE 306

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           NA  ++F  T+      T+ L +  +  +A+ G+  Q+ER   L   + GR+ + IATDV
Sbjct: 307 NAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           A+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAG KG +
Sbjct: 367 ASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTA 407


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 46  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRESQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 160 IRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376


>gi|239929077|ref|ZP_04686030.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 428

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 175/324 (54%), Gaps = 10/324 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELA 87
           L   DV+  A+TG+GKT+ FGL L   +    D    R  P     AP AL + PTREL 
Sbjct: 3   LSGTDVIGQAKTGTGKTLGFGLPLLERVTVPVDVEAGRAKPEDLTDAPQALVVVPTRELC 62

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
            QV  +L        V V    GG +   +   L+ G  +VVGTPGRL D    K LN++
Sbjct: 63  TQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLNLA 122

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
           H+KA+VLDEADEMLDLGF  D+E I++  P +R+ ++FSAT+  A+  LA+ Y      +
Sbjct: 123 HVKALVLDEADEMLDLGFLPDVEKIINLLPVRRQTMLFSATMPGAVIGLARRYMSQPTHI 182

Query: 208 NIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
              + + + + +      V  +   D+   +  IL+  G   A+VFC T+ + +     L
Sbjct: 183 RATAPDDEGATVANTKQFVYRAHNMDKPEMVARILQAEGRGLAMVFCRTKRTAADLADQL 242

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +    
Sbjct: 243 KQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEE 302

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI 348
            +  LHR GRTGRAG KG ++ ++
Sbjct: 303 EKTYLHRIGRTGRAGAKGTAITLV 326


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 223 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 282

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R+++ G ++V GT
Sbjct: 283 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREIERGCNVVCGT 342

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 343 PGRLLDMIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 401

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   ++++L+  G +
Sbjct: 402 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTE 461

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 462 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 521

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 522 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 561


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 182/338 (53%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250
             + + +  +  +V ++        +    V        +   +  +LR     KNAI+F
Sbjct: 192 RRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKLLREAKDLKNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R  AL   R G   + +A+DVAARG+D+
Sbjct: 252 CNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  V + ++  + ++ +HR GRTGRAGR G ++ ++
Sbjct: 312 PEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIV 349


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 196/355 (55%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFIK--------NKTTALILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ +H+  + L I H+  +VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I    + V+  ++ + +   L 
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R+  +   R    R+ +A
Sbjct: 232 -NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVR 345


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|260812834|ref|XP_002601125.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
 gi|229286416|gb|EEN57137.1| hypothetical protein BRAFLDRAFT_214468 [Branchiostoma floridae]
          Length = 370

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 177/314 (56%), Gaps = 9/314 (2%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L + + ++ E      FS    P A+ +APTRELA+Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPVLTGMMKEGLAGSSFSNIQEPQAICVAPTRELAIQIFSEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T +   +  GGVSV   +  +Q G H++V TPGRL D I    ++I  LK ++LDEA
Sbjct: 61  SYGTMLRPCIAYGGVSVMHHKSQIQRGCHLLVATPGRLLDFIDKGVISIKKLKYLILDEA 120

Query: 158 DEMLDLGFRDDIEFILDSS----PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           D MLD+GF  +I  +++++    P K  R+ LMFSAT    I  LA+++ +D + + I  
Sbjct: 121 DRMLDMGFEPEIRRLVETASWGMPAKGERQTLMFSATFPEEIQKLAQDFLEDYIFLTIGR 180

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
               ++D++   +  +  D+   + +IL   G +  +VF  T+ +       L++  F  
Sbjct: 181 VGGANTDVEQTVMESSQYDKREKLTDILGNLGQERVLVFVETKRNADFLASYLSQSGFPT 240

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R GRA V +AT VAARG+D+P + +V++ +L S+ +  +HR
Sbjct: 241 TSIHGDRLQKEREEALMDFRTGRAPVLVATSVAARGLDIPKVMVVVNYDLPSSIDEYVHR 300

Query: 332 SGRTGRAGRKGMSV 345
            GRTGR G  G ++
Sbjct: 301 IGRTGRVGNTGKAI 314


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 56  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V +   D + + + ++        +++F +TR  V
Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV+V   PA
Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTVEELPA 404


>gi|318062100|ref|ZP_07980821.1| putative ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 527

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 173/315 (54%), Gaps = 10/315 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96
           A+TG+GKT+ FGL L   +    D    R +P   + AP AL + PTREL  QV  +L+ 
Sbjct: 5   AKTGTGKTLGFGLPLLERVTVSADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
                 V V    GG +   +   L+ G  +VVGTPGRL D    + L++S ++A+VLDE
Sbjct: 65  AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS---EN 213
           ADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+  LA+ Y      +N  S   EN
Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVALARRYMSQPTHINATSPDDEN 184

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ +         D+   +  IL+  G    ++FC T+ + +  ++ L    F   A
Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR G
Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAGR G +V ++
Sbjct: 305 RTGRAGRSGTAVTLV 319


>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
           nidulans FGSC A4]
          Length = 465

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L  +DV+  A+TGSGKT AF L +   L+         
Sbjct: 59  EACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTL--- 115

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +  GV  AV +GG+ +  +   L    HI+V TP
Sbjct: 116 ---FGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATP 172

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK + +DEAD +LD+ F + ++ I+   P+ R   +FSAT+S 
Sbjct: 173 GRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYLFSATMST 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            + +L +    + VRV+++S+ +  S +    + +    ++  +V +L     ++AI+F 
Sbjct: 233 KVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFT 292

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+P
Sbjct: 293 TTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIP 352

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++V + +L  + +  +HR GRT RAG+ G+++  + Q
Sbjct: 353 SVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQ 391


>gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 651

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 183/356 (51%), Gaps = 10/356 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+  G V  T +Q+  +   L   D++  AQTG+GKT AF L L + L   
Sbjct: 23  DLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQL--- 79

Query: 66  NDRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +SP+      P AL +APTRELA Q+   L  L A   +      GG     + R L
Sbjct: 80  --SYSPSVRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGL 137

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVV TPGRL D +     + S +   +LDEAD MLDLGF   ++ I  S P  R+
Sbjct: 138 KRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQ 197

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+ P I  L   +  D  RV           I  R  L+A +D+ + + ++L +
Sbjct: 198 TMLFSATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQRVTLMAEADKRDRLCDVLNH 257

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+      +K + +  F V  L G++ Q  R   L+  RDGR +  IAT
Sbjct: 258 EDTGQCLIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGLIAT 317

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           DVAARGID+  L  V++ +L+  PE  +HR GRTGRAG  G+++ F  P    R A
Sbjct: 318 DVAARGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLA 373


>gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Ailuropoda melanoleuca]
 gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca]
          Length = 820

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
 gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
          Length = 433

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   +Q G 
Sbjct: 77  AEGRKP-NQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLAKIQEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V + +  +    I       +   +   +  I+    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEATQKTGHRIKEELFYPSNEHKMALLQTIIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDKAIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGELDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSI 357


>gi|255729782|ref|XP_002549816.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132885|gb|EER32442.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 571

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 29/361 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----SPASA 74
           G+   TS+Q A +   L ++DV+  A+TGSGKT++F + L + +L+ ++ +       + 
Sbjct: 177 GFNQPTSIQRASIPLSLIKRDVVGVAETGSGKTLSFLIPLFNYILSIDENYIKYEKSLNM 236

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPG 133
           P+ L +APTRELA+Q+ +E E    K G VV   IGG        D+ ++G HI+V TPG
Sbjct: 237 PMGLILAPTRELAIQITKEAEKFCKKLGYVVLSIIGGHQYSNTIDDIDKSGVHIIVATPG 296

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--------------- 178
           RL D I  K +++S    +++DEAD M+D+GF  D+  I+   P                
Sbjct: 297 RLVDSIDRKIIDLSKCYYLIMDEADRMIDMGFEKDLNKIMSKLPNSDQLSQTIDGRIFHL 356

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR  +MF+ATISP I  + KNY  D   V I        +I+ +   +  +  +    N
Sbjct: 357 DKRSTMMFTATISPPIEKITKNYLIDPGYVYIGGAGEALDNIEQQFEYLPSATSETTKFN 416

Query: 238 -ILRYHG--AKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +++Y G   KN      I+F + +      ++ L+ +    V + G  SQ+ R  A+  
Sbjct: 417 KLMKYIGNHMKNTRNPLIIIFANFKHVCDSLSQELSSNHLDNVVIHGSKSQEARELAINQ 476

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+  + + IATDVAARGID+P++ LVI+ ++ +  +  +HR GRTGRAG KG S   I 
Sbjct: 477 FRNHESEILIATDVAARGIDIPNVTLVINFQMVNKFDEYIHRIGRTGRAGNKGKSFTFIS 536

Query: 350 Q 350
           +
Sbjct: 537 E 537


>gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
 gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
          Length = 428

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 184/339 (54%), Gaps = 8/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRF 69
             ++E G+   + +Q  +L   L+  D +  AQTG+GKT AF + +   LL    E +RF
Sbjct: 58  HGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLRNPHEGERF 117

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIV 128
                P AL IAPTREL +Q+  +   L   TG+     IGG+   ++   L +    +V
Sbjct: 118 --LGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQLGREVVDLV 175

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186
           V TPGRL D    + L +  ++ +VLDEAD MLD+GF   ++ I+  +P K  R+ L+FS
Sbjct: 176 VATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQTLLFS 235

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  L++ +  DAV V I  ++     +D R  L +  +R   +VN+LR   A +
Sbjct: 236 ATFTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIYLASSEERFRILVNLLRSDDATS 295

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF + R  V R  + L +       LSGE++Q +R+  L   + G   V +ATDVA R
Sbjct: 296 VIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVATDVAGR 355

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GI +  +  V++  L  +PE+ +HR GRTGRAG  G S+
Sbjct: 356 GIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSI 394


>gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2]
 gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 556

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/333 (35%), Positives = 193/333 (57%), Gaps = 11/333 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           GY   + +Q   +   L   D++  AQTG+GKT AF L L S       R  P+   P  
Sbjct: 25  GYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS-------RIDPSRREPQM 77

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV    E  Y+K   GV V    GG  +  + + L+ GA I+V TPGRL
Sbjct: 78  LVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRL 136

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           CDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+  +I  
Sbjct: 137 CDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRG 196

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +A+ + K    V IA++ +  + I+   ++V    +  +I  +L        I F  T+ 
Sbjct: 197 IAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQ 256

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVAARG+D+P +  
Sbjct: 257 ATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITH 316

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V++ ++  +PE+ +HR GRTGRAGR+G ++ ++
Sbjct: 317 VLNIDMPYDPESYVHRIGRTGRAGREGRALLLV 349


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 46  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 376


>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 598

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 182/335 (54%), Gaps = 5/335 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+   Y   T++Q   + P +  +D+   AQTG+GKT AF L L   L+ +N R     
Sbjct: 15  ALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLDRLI-KNPRQGKLR 73

Query: 74  A--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P AL ++PTRELA Q+   +   Y +  +  ++ I GGVS   + + L  G  +++ 
Sbjct: 74  GRLPRALVLSPTRELAGQIHDSVRR-YGRHAMQNSLTIYGGVSQVPQVKGLNAGQDVLIA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLCD ++   +N+S ++  VLDEAD MLD+GF  DI  I+   P++++ L+FSAT+ 
Sbjct: 133 TPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQKQTLLFSATMP 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA     D V +NI  E      I      V    +   + ++L+      A+VF
Sbjct: 193 PEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASVLKREEVTRAVVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +   +V A+ G  SQ  R   L   ++G  +V +ATDVAARG+D+
Sbjct: 253 VRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLVATDVAARGLDV 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +  VI+ +L   PE  +HR GRTGRAG+ G+++
Sbjct: 313 TGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAI 347


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+ +
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDINE 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 46  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 100 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 160 IRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 220 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 279

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 280 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 339

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 340 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 376


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 19/340 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +++   +   L E          
Sbjct: 57  GFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSILQKIDINLKETQ-------- 108

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL +APTRELA Q+ + +  +     V V  C+GG +V  + R LQ G HIVVGTPGR+
Sbjct: 109 -ALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDIRTLQQGVHIVVGTPGRV 167

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I  + L    +K  VLDEADEML  GF+D I  +    P+K ++ +FSAT+   +  
Sbjct: 168 GDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPEKVQVALFSATMPLDVLE 227

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251
           +   + ++ +R+ +  +      I  +   +A+ DR+    + + ++        AI++C
Sbjct: 228 VTHRFMREPIRILVKRDELTLEGI--KQFFIAI-DREEWKFDTLCDLYETLTITQAIIYC 284

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+ 
Sbjct: 285 NTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRVLITTDLLARGIDVQ 344

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            + LVI+ +L +N EN +HR GR+GR GRKG+++  +  N
Sbjct: 345 QVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHN 384


>gi|156369954|ref|XP_001628238.1| predicted protein [Nematostella vectensis]
 gi|156215209|gb|EDO36175.1| predicted protein [Nematostella vectensis]
          Length = 361

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 175/307 (57%), Gaps = 6/307 (1%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
           +  AQTGSGKT A+ L + ++L+ +    +P  +PLAL +APTRELA Q+  E       
Sbjct: 1   MACAQTGSGKTAAYMLPVLTSLIKQGLN-APPRSPLALCVAPTRELAKQIYIEARKFSDH 59

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           T + V VC GGVSV  +   L+ G H +VGTPGRL D +  + + +  ++ ++LDEAD M
Sbjct: 60  TPIKVCVCYGGVSVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRM 119

Query: 161 LDLGFRDDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQ 215
           LDLGF  DI  +++ S     + R+ LMFSAT    I  LA ++ K D + + +      
Sbjct: 120 LDLGFGPDIHKLIEESNMTAKESRQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRVGGT 179

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           + DI    + V  S++ + +  IL   G    +VF   +         L+++ F   ++S
Sbjct: 180 NLDITQHVITVNGSEKRDKLHEILSATGTDRTLVFVELKRVADFLAAWLSQNNFPTTSIS 239

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
            +  Q ER  AL+  RDGRA + +AT VAARG+D+P+++ VI+ +L  + E  +HR GRT
Sbjct: 240 SDRCQSEREAALRDFRDGRANILVATSVAARGLDIPNVKHVINYDLPQDIEEYVHRVGRT 299

Query: 336 GRAGRKG 342
           GR G +G
Sbjct: 300 GRIGNEG 306


>gi|324513918|gb|ADY45697.1| ATP-dependent RNA helicase [Ascaris suum]
          Length = 435

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%)

Query: 47  GSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
           GSGKT AF L +   LL    +        AL + PTRELA Q+  + + L A  G++VA
Sbjct: 37  GSGKTAAFALPILQALLDTPQKL------FALILTPTRELAFQIAEQFDALGASIGLLVA 90

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGF 165
           V +GGV +  +   L    H++V TPGRL DH+   KG N+  LK +V+DEAD +L++ F
Sbjct: 91  VIVGGVDMVTQALALAKRPHVIVATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDF 150

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             +++ IL   PK+RR  ++SAT++  +  L +   +D  RV + S+ +    +    + 
Sbjct: 151 EVELDKILKVLPKERRTYLYSATMTKKVAKLERASLRDPARVEVCSKYKTVDKLKQHYIF 210

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +    ++  +V IL     + AIVFC+T AS  +   +L +  F  V L G++SQ +R  
Sbjct: 211 IPQKYKEAYLVYILNEMAGQTAIVFCATCASTMKTALMLRQLGFGAVPLHGQMSQAKRLG 270

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L   +     + + TDVA+RG+D+P+++ V++ ++ S  ++ +HR GRT RAGR G+S+
Sbjct: 271 SLNKFKSKVRPILVCTDVASRGLDIPNVDAVLNYDVPSQSKDYVHRVGRTARAGRSGVSI 330

Query: 346 FVIPQ 350
             + Q
Sbjct: 331 TFVTQ 335


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 47  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 101 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 161 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 221 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 281 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 341 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 377


>gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 427

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ TSVQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L+ GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      D +     SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 189/364 (51%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ V++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 470

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L + L   N +F    
Sbjct: 15  AVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTNAQFKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKLRGGVDVLIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N   + I+     V    +   +  ++     K  +VF  T
Sbjct: 195 KGLASKLLTNPASVEVARRNTASAQIEQSVHFVDKKRKRELLSQMIGEGDWKQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLVATDIAARGLDIDML 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLLRDIERLLKREIPRIALE 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 201/360 (55%), Gaps = 21/360 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  VQ     P    KD++  A+TG+GKT +F + L   L + +       +
Sbjct: 140 LKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEKLQSVSQDEKRGRS 199

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPG 133
           P  L + PTRELA+QV ++ + L  K  V    C  G + ++ + DL +NG  I+VGTPG
Sbjct: 200 PKVLVLVPTRELAIQVAKDFKNLTRKLSVA---CFYGGTPYKAQFDLLKNGIDILVGTPG 256

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSAT 188
           R+ DHI+   L++S++K VVLDE D MLD+GF + +E IL  + KK      + L+FSAT
Sbjct: 257 RIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGSENSPQTLLFSAT 316

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILR-YHGA 244
               +  +AK Y K +  +V++  +  Q +   +++ A+    S R   + +I++ Y G+
Sbjct: 317 CPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAEVLGDIIQVYSGS 376

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATD 302
               IVFC T+   +     L   L Q   +L G++ Q++R   L+  R+G   V IAT+
Sbjct: 377 HGRTIVFCETKKEANEL--ALNSALKQEAQSLHGDIPQKQREVTLKGFRNGVFEVLIATN 434

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ +       QR+ E L ++
Sbjct: 435 VAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICF----YQRKEEDLLKQ 490


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 187/346 (54%), Gaps = 3/346 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I   L E+G  + T +Q   +   +  +DV+  AQTG+GKT AFGL +   L+    
Sbjct: 11  PRLIA-VLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIHALMKAGV 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + +P  A   L +APTRELA Q+   L      + + VA+ +GG  +  + + L  G  +
Sbjct: 70  KPNP-KAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQTKRLAGGVDL 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +     +VLDEAD+MLD+GF   +  I     K R+ +MFSA
Sbjct: 129 LVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAKDRQTMMFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   ++ LA  +  DAVRV +    +    I      VA + + + +V++L  H  + A
Sbjct: 189 TMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDLLDKHRDELA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    +  K L    F   ++ G  SQ +R  A++  + G+ RV +ATDVAARG
Sbjct: 249 LVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVLVATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           ID+P +  V + +L +  EN +HR GRT RAG  G ++  V P  M
Sbjct: 309 IDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEM 354


>gi|84494425|ref|ZP_00993544.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84383918|gb|EAP99798.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 774

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 189/357 (52%), Gaps = 6/357 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  G  +   +QEA +   L  +DVL   QTGSGKT+AFGL    T L +  R +P 
Sbjct: 336 ERLARDGITSPFPIQEATIPDALAGRDVLGRGQTGSGKTLAFGLPTI-TRLVDGTRPAPK 394

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA+QV   LE L   TG+   +  GG+S   + R L++G  I+V TP
Sbjct: 395 R-PRALIMVPTRELAMQVSDALEPLVHVTGLRHKLVAGGLSYEPQVRALKSGIDILVATP 453

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I      +  ++ V+LDEAD M D+GF  ++  I+D  P   + L+FSAT+   
Sbjct: 454 GRLNDLIERGACELDDVQVVILDEADHMADMGFMPEVTAIMDKIPAGGQRLLFSATLDKG 513

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   Y  D V  +        + + +  +L+  +++      +    G    +VF  
Sbjct: 514 IDKLVDRYLSDPVTHSTEDAQASVTTMSHHIMLIDPNNKKQLTAELAARDG--RTVVFVR 571

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  + L E      A+ G LSQ  R+ AL   RDG   V +ATDVAARGI + D
Sbjct: 572 TQLGADRIARELREKGVLAAAIHGGLSQNLRNRALGAFRDGSLPVLVATDVAARGIHVDD 631

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVV 368
           + LV+ A+  ++ ++ LHR+GRT RAG KG  V F +P + +R  ERL   A + V 
Sbjct: 632 IGLVLQADPPADHKDYLHRAGRTARAGEKGTVVTFALP-HQKRTMERLAEAAGLDVA 687


>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
 gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
          Length = 429

 Score =  196 bits (499), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 197/373 (52%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+   GY   T +Q   +   +  +D+L +AQTG+GKT AF L +   L A   R  
Sbjct: 12  ILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQRLSAVPTRHR 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL + PTRELA QV   +        +      GGV ++ +   L++G  +VV 
Sbjct: 72  ---APRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISALRSGVDVVVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ + + +S ++  VLDEAD MLD+GF  DI  ++ + P+KR+ L+FSAT S
Sbjct: 129 TPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKRQNLLFSATFS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA     D   V+ A  N     I ++   VA S +   + +++        +VF
Sbjct: 189 GEIRKLADQILHDPASVDTAPRNSVAELITHKVHPVAQSRKRALLAHLIGNGKWSQVLVF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L        A+    SQ  R+ ALQ  + GR RV +ATD+AARG+D+
Sbjct: 249 TRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLVATDIAARGLDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLF-REANVS 366
             L  V++ ELS+  E+ +HR GRTGRAG +G +V ++  + ++     ERL  R    +
Sbjct: 309 EALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANIERLLGRRLPCT 368

Query: 367 VV--WEPAPSVEA 377
           V+  +EP  + EA
Sbjct: 369 VIEGFEPVAANEA 381


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 178/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  R  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 58  GFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATF----CSGILQQLD--GHLNECQAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L       V  C+GG  V +++R  Q+G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQSGVHVVVGTPGRVYDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H++  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++FC+TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L + PEN LHR GR+GR GRKG+++
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAI 379


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 189/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+   +V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITQGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353


>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
 gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
          Length = 427

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 194/377 (51%), Gaps = 4/377 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LSE  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L         A  
Sbjct: 24  LSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83

Query: 75  PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV    L +     G + +    GGVSV+ + + L+ GA ++V TP
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SAT    
Sbjct: 144 GRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEALPSKKQTLLYSATFPEE 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L        +  ++ SE  Q S I+ R + V    +   + ++++ H    A++F S
Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARGID+  
Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARGIDIDK 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +V E  
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381

Query: 373 PSVEAIRERDAQRILQD 389
           P  EA  E   + + Q+
Sbjct: 382 PGFEANAEMPLEVLAQE 398


>gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 442

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVEVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|315079878|gb|EFT51854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
          Length = 491

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + +VF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTVVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 ANVSVV 368
           A V  V
Sbjct: 378 AGVKPV 383


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 213/394 (54%), Gaps = 23/394 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + + + G+   T +Q   L   L+  DV   AQTG+GKT AF +A  + LL +
Sbjct: 21  DLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFNRLLRD 80

Query: 66  NDRFSPASAPL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                PA A        AL +APTRELA+Q+ ++   L A TG+ + +  GG    ++R+
Sbjct: 81  -----PAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQ 135

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSP 177
            L +G  I++GTPGR+ D+ + K  ++  ++ +VLDEAD M DLGF  DI F+L   + P
Sbjct: 136 QLVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPP 195

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT+S  +  LA  +  +  +V    E      +       A  ++   ++ 
Sbjct: 196 TERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPANPEKIPLLLG 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++  G   ++VF +T+    +    L  +  +V  LSG++ QQ+R   L+   +   +V
Sbjct: 256 LMKRIGPSRSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEFQV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIP 349
            +ATDVAARG+ +PD+  V + +L  + E+ +HR GRTGRAG +G +V        F +P
Sbjct: 316 LVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFYLP 375

Query: 350 QNMQRRAERLFREA-NVSVVWEPAPSVE-AIRER 381
           +  Q    ++   A +  ++ +PAP  +  IRER
Sbjct: 376 EIEQYIGFKIEAGAIDPELLVKPAPPAKREIRER 409


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 193/358 (53%), Gaps = 9/358 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RG+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      A
Sbjct: 52  RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-A 105

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D
Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + 
Sbjct: 166 MLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 225

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           + +    VR+ +  +      I    V V   + +   + ++        +++F +TR  
Sbjct: 226 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK 285

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 286 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           I+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 346 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 401


>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 630

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+   +V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353


>gi|219119937|ref|XP_002180719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408192|gb|EEC48127.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 822

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/408 (32%), Positives = 196/408 (48%), Gaps = 54/408 (13%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAE 65
           Q + + LSE+G  + T VQ     P +  +DV+  ++TG+GKT+AFGL   +   T   E
Sbjct: 146 QRVIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRTGTGKTLAFGLPALTRLVTFTTE 205

Query: 66  NDR------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           N +               + + PTRELA QV  EL  +    G+ V V  GGVS   + R
Sbjct: 206 NGKRDARGVMKSGRKVSMIILCPTRELARQVQEELSQVARPLGLFVEVFHGGVSYDPQSR 265

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DS 175
            L+ G  ++VGTPGR+ DHI    L++S     VLDEADEML++GF DD+E +L     +
Sbjct: 266 ALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVVLKNVGSN 325

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVN--------------------------- 208
           +P+K + L+FSAT    +  + + YQKD + ++                           
Sbjct: 326 NPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRHLAVQLAPGADA 385

Query: 209 --------IASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
                   IA E  + +DI          +  A   R N     ++       IVF  T+
Sbjct: 386 KRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKIFGKTIVFTETK 445

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                             AL G++ Q++R + L   R G   V +ATDVAARGID+ D++
Sbjct: 446 READELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVAARGIDIQDVD 505

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           LVI  +   + +  +HRSGRTGRAG+KG+SV +  Q   R   R+ R+
Sbjct: 506 LVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERD 553


>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
 gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
          Length = 807

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 193/369 (52%), Gaps = 29/369 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY + T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 384 SLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 443

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 444 PKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 503

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 504 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQK 563

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 564 PDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 623

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ + +L++  ++   ++ +L        I+F + +       K L +  +    L G
Sbjct: 624 ERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 683

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 684 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTG 743

Query: 337 RAGRKGMSV 345
           RAG+ G+++
Sbjct: 744 RAGKSGVAM 752


>gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 383

 Score =  196 bits (499), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I  ++++ G+  LT +Q  IL   L  +D +  AQTG+GKT  F + +   LL     +D
Sbjct: 16  ILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITIIEALLKRPFADD 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAH 126
                  P AL +APTRELA Q+  +   L   T +     +GG+   ++   L ++   
Sbjct: 76  EMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDKQIAALDKSYTD 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           I++ TPGRL D I    + +  ++A VLDEAD MLD+GF  DI+ ++   P    R+ L+
Sbjct: 136 ILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRYMPPNTDRQSLL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  +  LA  +  + V V I  E++    ++    L+  +D+  A++ IL     
Sbjct: 196 FSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEADKHQALIQILAQPET 255

Query: 245 KNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           K  IVF + +  V R +TK+ A+H   VV LSG++ Q +R   L   ++G A+V +ATDV
Sbjct: 256 KKVIVFANRKDQVKRLYTKLSADH--NVVMLSGDVDQAKRERYLDKFKNGNAKVLVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           A RGI + D+  V++  L   P++ +HR GRTGRAG+KG+S+  + ++
Sbjct: 314 AGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSED 361


>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 413

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 183/340 (53%), Gaps = 3/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  AL E  Y   TS+QE  +   L++ D++ SAQTG+GKT AF + +   L  +
Sbjct: 7   NIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPILQHLEKD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   S +    +L + PTRELA+Q+G         T +   V  GGV+ +++   ++NG 
Sbjct: 67  N---SNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAIRNGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ ++   P KR+ L F
Sbjct: 124 DVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQSLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L++    +  ++ +   +     I         S + + +++IL+     
Sbjct: 184 SATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLYYTNKSTKKDLLLHILKDSKMD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    R  K L +      A+ G+ +Q +R  AL   +D   RV +ATD+AA
Sbjct: 244 QVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  L+ VI+ ++ +  E  +HR GR+GRAG  G+S+
Sbjct: 304 RGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSI 343


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
 gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 468

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 197/371 (53%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N       
Sbjct: 15  AVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHNPHPKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252
            TLA+    +  +V +A  N     +     LV    R   ++++L   G  +  +VF  
Sbjct: 195 KTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVD-KKRKRELLSLLIGRGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AARGID+ +
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAARGIDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV 368
           L  V++ EL +  E+ +HR GRTGRA   G +   V V    + R  ERL  RE     V
Sbjct: 314 LPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERLLKREIPRMAV 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 EGFEPDPSIKA 384


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 184/348 (52%), Gaps = 18/348 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------ASTLLAEND 67
           AL E G     ++QE  L   L   D++  A+TG GKT  FG+ L       +T  A  D
Sbjct: 52  ALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALD 111

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE----WLYA-KTGVVVAVCIGGVSVHRERRDLQ 122
                  P AL I PTREL +QV ++LE    +L   K  + V    GG     +   LQ
Sbjct: 112 -----GTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPYETQIATLQ 166

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF  DIE IL   P KR+ 
Sbjct: 167 KGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILGMVPDKRQT 226

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I TLA+ +  Q   +R   A ++  H             D+   +  +L+
Sbjct: 227 MLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVARVLQ 286

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    ++F  T+ +  +    LAE  F V ++ G+L+Q  R  AL+  R G+  V +A
Sbjct: 287 AEGRGATMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRTGKIDVLVA 346

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 347 TDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 394


>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 3/360 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+ +G      +Q A L   L  +DVL   +TGSGKT  F L L + L A 
Sbjct: 8   GLPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPLLARLAAG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   P AL +APTRELA Q+   +  L    G+      GGVS + +   L++G 
Sbjct: 68  PTRRKPGR-PRALILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQITRLRDGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DH+R   + +  ++  VLDEAD M DLGF  ++  I+D +P + + ++F
Sbjct: 127 DIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTPSRGQRMLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K +  D +  ++ S     S +++  + +  + R   +V++    G  
Sbjct: 187 SATLDNGVDVLVKRFMNDPITHSVDSAQSPVSTMEHHVLHLEETHRLPVLVDLTAAPG-- 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T++     T+ L       V L G L Q  R+  L+    G A+  +ATD+AA
Sbjct: 245 RTLVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++     R    L R+A +
Sbjct: 305 RGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRDVRDLTRKAGI 364


>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
 gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 192/348 (55%), Gaps = 7/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EA    G+ N T +Q   +   L  KD++  AQTGSGKT AF L     LL   
Sbjct: 17  ICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPTLQALL--- 73

Query: 67  DRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            + S  S P+  A  ++PTRELA+Q+  + E L +  G+  AV +GGV +  +   L   
Sbjct: 74  -QASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQTIALAKR 132

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGRL DH+   KG ++  LK ++LDEAD +L+  F   ++ IL    + R+  
Sbjct: 133 PHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVISRDRKTY 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  +  L +   ++ V++ +AS+      +  + +      ++  +V+ L    
Sbjct: 193 LFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKYKECYLVHALTLKS 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF  T  +      VL     + + ++G +SQ +R  AL   + G   + I TDV
Sbjct: 253 GASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECNILICTDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           A+RG+D+P +++V++ ++ +N ++ +HR GRT RAGR G+++ ++ QN
Sbjct: 313 ASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQN 360


>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 461

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 185/341 (54%), Gaps = 7/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA  +  +   +++Q+  +   L+++D++  AQTGSGKT AF + +   L      F 
Sbjct: 53  ICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQALWENPCPF- 111

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  + +APTRELA Q+  + E L    GV   V +GG+ +  +   +    HI+V 
Sbjct: 112 -----FGVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKKPHILVC 166

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++ +LK +V+DEAD +LD+ F   I+ IL   PK+RR  +FSAT+
Sbjct: 167 TPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERRTFLFSATM 226

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +    + VR+ ++S+      +  + +      +D  +V I+     ++ I+
Sbjct: 227 TSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYLFFPFKHKDTYLVYIVNEMAGQSMII 286

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T     R   +L    F  + L G+LSQ  R  AL   + G   + +ATDVAARG+D
Sbjct: 287 FTRTVNDTQRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVAARGLD 346

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P ++ VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q
Sbjct: 347 IPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQ 387


>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 451

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 189/346 (54%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHKRRQTLM 184

Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
           FSAT+    I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLARLLKDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R    L    F   ALSG+L Q  R+  +     G+ +V + TD
Sbjct: 245 THKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQQVLVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus]
 gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus]
 gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus]
          Length = 820

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 184/335 (54%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+  G+   T +Q   +   L   D+L  AQTG+GKT+AFGL L + LLAE  + +
Sbjct: 13  LNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLINHLLAEPGKPA 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +A  AL +APTREL  Q+   L  L   T + VA  +GG S++R+   L  G  I+V 
Sbjct: 73  PKTAK-ALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFLARGTDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  + +++  ++ +VLDEAD+MLDLGF   +  I       R+ ++FSAT+ 
Sbjct: 132 TPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQTMLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y ++  +V ++   +    I      +    + + +  IL        +VF
Sbjct: 192 KQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSKLREILSRDMDALTLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L    +   ++ G  SQ +R  A++  R G   V +ATDVAARGID+
Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVLVATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +  VI+ +L   P+N +HR GRT RAGR+G ++
Sbjct: 312 PGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAI 346


>gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4]
          Length = 438

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q+G  I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK 
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 437

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 189/342 (55%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 503

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 194/359 (54%), Gaps = 12/359 (3%)

Query: 4   FENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           F ++P    +  S    + + T +Q A        +DV+  A+TGSGKT+AFGL     +
Sbjct: 88  FSHLPSCDSKLYSSLSSFASPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKI 147

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L         + P A+ I+PTRELA+Q+  ++       G+      GGV    +R  L+
Sbjct: 148 LDSGKIKFKNARPAAVIISPTRELAMQIYDQISKYAGSIGIKATCIFGGVKKDEQREALK 207

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRR 181
           + A IVV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+ S+P  KR+
Sbjct: 208 SAA-IVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIISSTPDSKRQ 266

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +MF+AT  P++  LA  +   AV V I    +++ R ++ I     +V   D++  +V 
Sbjct: 267 TVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYRLVQ 326

Query: 238 ILRYH--GA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +L  +  GA      +VFC  +    R  ++L    F+V  + G+L+Q ER  +L   + 
Sbjct: 327 LLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNKNFKVAGIHGDLNQHERFKSLDAFKS 386

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G A V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG +G ++ +  + 
Sbjct: 387 GAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFTET 445


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 196/354 (55%), Gaps = 7/354 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +  +   AL
Sbjct: 57  GFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTATFSISI----LQQID--TSLNECQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L  G+H+VVGTPGR+ D 
Sbjct: 111 ILAPTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDTGSHVVVGTPGRVYDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  VLDEADEML  GF+D I+ +     +  ++++ SAT+   +  ++ 
Sbjct: 171 IARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDIQVILLSATMPEDVLDVST 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ ++ VR+ +  E      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 231 HFMRNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTLSITQAVIFCNTRRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V A+ GE+ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 291 EWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +L SN EN +HR GR+GR GRKG+++  I ++ +R  + +    N  V+  P
Sbjct: 351 NYDLPSNRENYIHRIGRSGRFGRKGVAINFITEDDKRAMKDIESFYNTHVLEMP 404


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515


>gi|314986130|gb|EFT30222.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
          Length = 491

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RLFR+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLFRQ 377

Query: 363 AN 364
           A 
Sbjct: 378 AG 379


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 191/357 (53%), Gaps = 20/357 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++ +A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L  
Sbjct: 123 PELL-KAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLTYISKLPP 181

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 A  P A+ +APTRELA Q+  E         + V   +GG S+  +   L+ G 
Sbjct: 182 MTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQGFKLRQGC 241

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P        
Sbjct: 242 EVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPEN 301

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  
Sbjct: 302 EDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKE 361

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +++ + +  +L   G K AI+F +T+ S    ++ L ++ ++V  L G  +Q++R  +L 
Sbjct: 362 TEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHGGKTQEQREVSLD 421

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R+ R    +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 422 GFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGIAT 478


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|145596599|ref|YP_001160896.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145305936|gb|ABP56518.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 461

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 7/352 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ +   L+ +G      +Q A +   L  +DVL   QTGSGKT+AFGL L + L A 
Sbjct: 15  GLPQPLVRELARQGITTPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLLARL-AN 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R  P   P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G 
Sbjct: 74  GERARPRH-PRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISSLRRGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 133 EVLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQRLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  + A        +D+  +L+   D+ + + +I    G  
Sbjct: 193 SATLDKDVDALVRRFMTDPVTHSTAPPTAAVETMDHHLLLIPPHDKFSVVASIAAREG-- 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+  V R    LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAA
Sbjct: 251 RTMVFARTQLGVDRLVGQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVLVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRRA 356
           RGI +  + LV+H +   +P++ LHR+GRT RAG  G ++   +P+  QRR 
Sbjct: 311 RGIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLALPK--QRRG 360


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 193/369 (52%), Gaps = 32/369 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L S +  E
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLSGI-EE 455

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D+      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G 
Sbjct: 456 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 510

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P        
Sbjct: 511 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 570

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  +
Sbjct: 571 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 630

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +  L++ S++   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 631 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 690

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG
Sbjct: 691 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 750

Query: 340 RKGMSVFVI 348
           + G+++  +
Sbjct: 751 KSGVAITFL 759


>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
          Length = 628

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 201/363 (55%), Gaps = 15/363 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  VQ          KDV+  A+TG+GKT +F + L   L  ++        
Sbjct: 63  LKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFAIPLIEKLQRDSQERKRGRT 122

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA+QV R+ + +  K  + VA   GG + + +   ++NG  I+VGTPGR
Sbjct: 123 PKVLVLAPTRELAMQVARDFKDVTRK--LTVACFYGGTAYNGQLDLIRNGIDILVGTPGR 180

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189
           + DH+    L IS LK VVLDE D+MLD+GF D +E IL  + KK      + L+FSAT 
Sbjct: 181 IKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAYKKDSEDNPQTLLFSATC 240

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    ++++  +  + +   +++ A+    S R   I ++L+ Y G+ 
Sbjct: 241 PHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWSQRAAVIGDVLQVYSGSH 300

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              I+FC T+   +     L   + Q   +L G++ Q++R   L+  R+G   V +AT+V
Sbjct: 301 GRTIIFCETKKEATEL--ALNASIKQDAQSLHGDIPQKQREVTLKGFRNGAFGVLVATNV 358

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVI +    + E+ +HRSGRTGRAGR GM +    +    + +++ ++A
Sbjct: 359 AARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCICFYQRKEDYQLKQVEQKA 418

Query: 364 NVS 366
            ++
Sbjct: 419 GIT 421


>gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 576

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 197/375 (52%), Gaps = 8/375 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   GY   + +Q A +   L  KDVL  AQTGSGKT AF L L       N+     
Sbjct: 19  KSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLL------NNINISL 72

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L + PTRELAVQV +   ++     G  V    GG     +   L+ G  I+VGT
Sbjct: 73  KFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLHALRRGPQIIVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++   L++ HL ++VLDEADEML +GF +D+E I+   P+K +  +FSAT+  
Sbjct: 133 PGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRKHQTALFSATMPN 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +++ +      + I S      DI  ++  +    + +A++  L        I+F 
Sbjct: 193 IIRRISRRFMNTPKEIKIQSTGITRPDIQ-QSYWIVRGRKTDALIRFLEVEDFSATIIFV 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +    ++ L ++ +   AL+G+++Q  R   L+ +++G+  + IATDVAARG+D+ 
Sbjct: 252 RTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDILIATDVAARGLDVD 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ ++ ++ E+ +HR GRTGRAGR G ++  +     R  + + R     +    
Sbjct: 312 RISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKNIERIIKHPIHEIQ 371

Query: 372 APSVEAIRERDAQRI 386
            P  E + E+  Q I
Sbjct: 372 LPKSEILIEKRLQNI 386


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score =  196 bits (498), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 187/352 (53%), Gaps = 11/352 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAI 80
           T +Q+  +   L  +D++  AQTGSGKT AF + + + L+ ++    R+S  + P  L +
Sbjct: 208 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 267

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           APTRELA+Q+  E +     T +   V  GG   H + R++Q G H++V TPGRL D I 
Sbjct: 268 APTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 327

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSATISPAITTL 196
              +++   K +VLDEAD MLD+GF   I  I++ S  P    R+ LMFSAT    I  L
Sbjct: 328 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKL 387

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRA 255
           A ++  + + + +         I    + +   ++ N + NI         I +F  T+ 
Sbjct: 388 AADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTLILIFVETKK 447

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                 + L    + V ++ G+ SQ ER  AL M R+G+  + +AT VAARG+D+P+++ 
Sbjct: 448 GADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAARGLDIPNVKH 507

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--RLFREAN 364
           VI+ +L S+ E  +HR GRTGR G  G +  F + +N     +   L +EAN
Sbjct: 508 VINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVDKNNNIAIDLVDLLKEAN 559


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/346 (35%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L     +++ 
Sbjct: 7   SLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQRVIST 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 67  --RSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LM 184
           H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF   ++ I +++  KRR  LM
Sbjct: 125 HFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHKRRQTLM 184

Query: 185 FSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           FSAT+  + I  +A    K+   V I + + +H+DI  R  L    D   A++  +L+  
Sbjct: 185 FSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLTRLLQDE 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF +TR    R    L+   F   ALSG+L Q  R+  +     G+ ++ + TD
Sbjct: 245 THKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQILVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 305 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
 gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
          Length = 421

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  +  I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +   
Sbjct: 3   FEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   L
Sbjct: 63  LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR+
Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L  
Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IAT
Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++
Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344


>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. BTAi1]
          Length = 469

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 1/343 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL E  Y   T +Q   +   L+ +DV+  AQTG+GKT +F L +   LL  
Sbjct: 8   NLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILHRLLEN 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P +A   L ++PTREL+ Q+            +  A+ IGGV + R+ R L  G 
Sbjct: 68  RIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQVRALMPGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P KR+ L F
Sbjct: 127 DVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA    +D  RV +   +     I  R + V  S + + +  +L+     
Sbjct: 187 SATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVIQVDHSAKPSLLAQLLKDEPVN 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  +ATD+AA
Sbjct: 247 RALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  +  V++ +L + PE  +HR GRT RAG  G+++ ++
Sbjct: 307 RGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLV 349


>gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 432

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 190/351 (54%), Gaps = 2/351 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   + 
Sbjct: 6   FSFAPEIL-HAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMF 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++   +  S   AL +APTREL  QV   ++       + V    GGV +  +   ++ 
Sbjct: 65  -DSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAKVKK 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ IL    + R+ L
Sbjct: 124 GADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA         + +  +N     +      V    +   +  ++    
Sbjct: 184 LFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIGKKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF +TR +     K L         +  E +Q  R  AL+  ++G+ R  +AT+V
Sbjct: 244 WQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+P+LE V++ +L    E+ +HR GRTGRAGR G+++ ++ +  +R
Sbjct: 304 AARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEER 354


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 195/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFIK--------NKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ +H+  + L I H+  +VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I    + V+  ++ + +   L 
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSELTKQLG 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 232 -NRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVR 345


>gi|21223535|ref|NP_629314.1| helicase [Streptomyces coelicolor A3(2)]
 gi|9714451|emb|CAC01367.1| putative helicase [Streptomyces coelicolor A3(2)]
          Length = 879

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/327 (37%), Positives = 179/327 (54%), Gaps = 16/327 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPAS---APLALAIAPTRELA 87
           L  KDV+  A+TG+GKT+ FGL L   +    D    R +P S   AP AL + PTREL 
Sbjct: 7   LSGKDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAAPESLTDAPQALVVVPTRELC 66

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
            QV  +L        V V    GG +   +   L+ G  ++VGTPGRL D      L++ 
Sbjct: 67  QQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKQGVDVIVGTPGRLLDLAGQNKLSLK 126

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
           H+K++VLDEADEMLDLGF  D+E I++  P +R+ ++FSAT+  A+  LA+ Y      +
Sbjct: 127 HIKSLVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMSQPTHI 186

Query: 208 NIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +  S + + + +       YRA  +   D+   +  IL+  G   A+VFC T+ + +   
Sbjct: 187 SATSPDDEGATVANTKQFIYRAHNM---DKPEMVARILQADGRGLAMVFCRTKRTAADLA 243

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ + 
Sbjct: 244 DQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQS 303

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348
               +  LHR GRTGRAG KG ++ ++
Sbjct: 304 PEEEKTYLHRIGRTGRAGAKGTAITLV 330


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 178/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  R  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 58  GFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATF----CSGILQQLD--GHLNECQAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L       V  C+GG  V +++R  Q G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQRICQAGVHVVVGTPGRVYDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H++  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGLFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   D + + + ++        +++FC+TR  V
Sbjct: 232 KFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFCNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L + PEN LHR GR+GR GRKG+++
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAI 379


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +    GGVS             +VV TP
Sbjct: 75  GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDLVVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +R+ L+FSAT+ S 
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           A+   A     D V V+     R+   I    YRA   +L  +   + N+LR      ++
Sbjct: 195 AVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCNLLRQPDVTKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +   Q   L GE+ Q +R+ A++ M DGR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I
Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLI 352


>gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 584

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 203/373 (54%), Gaps = 14/373 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+   T VQ A +   L   D++VS+QTGSGKT AF L   + +  +     P +
Sbjct: 15  ALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALNRIAGQ-----PGN 69

Query: 74  APLA---LAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128
             +    L + PTRELA+QV  E    Y +   G+  A  +GG+    + + L     ++
Sbjct: 70  KGVGVQVLVLTPTRELALQV-TEATGSYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  P++R+ L+FSAT
Sbjct: 129 VATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQERQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246
           +   +  LA    ++  R+ +A +  +H++I  +++L A   S +   + ++LR      
Sbjct: 189 LDGTVAKLAARMMREPQRIEMAGQKEKHTNI-TQSLLYADDASHKMQLLDHVLRDAKLDQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G+ R+ +ATDVAAR
Sbjct: 248 AIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRILVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +   ++ +L    E+ +HR GRTGRAGR G +  +     + +  R+      S
Sbjct: 308 GIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHKVRRIEHYIGQS 367

Query: 367 VVWEPAPSVEAIR 379
           +  E    +E  R
Sbjct: 368 ITPETIAGLEPKR 380


>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 419

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 184/345 (53%), Gaps = 4/345 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K++ NI Q    AL E GY N T +QE  +   L  +D++  AQTG+GKT AF + + +
Sbjct: 6   LKLYNNIQQ----ALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPILN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +         A     L + PTRELA+Q+    +     T V   V  GGV+   +  +
Sbjct: 62  LIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVNE 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D  +   +++ HL  +VLDEAD+MLD+GF +D++ I+  +P  R
Sbjct: 122 LKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA  +      +++   +    ++  +   V   D+   +  ++ 
Sbjct: 182 QTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVYFVNKDDKRLLLKQLII 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                NA+VF  T+       KVL +   +  A+ G+ SQ  R   L+  ++    + +A
Sbjct: 242 EESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TD+AARGID+  L  VI+ ++ +  E  +HR GRTGRAG  G+++
Sbjct: 302 TDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAI 346


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 47  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 101 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 161 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 221 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 281 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 341 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 377


>gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
 gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
          Length = 421

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 182/343 (53%), Gaps = 3/343 (0%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  +  I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +   
Sbjct: 3   FEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   L
Sbjct: 63  LYLQKKKGYKRGIK-ALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR+
Sbjct: 122 ERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L  
Sbjct: 182 SLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLEN 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IAT
Sbjct: 242 PELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++
Sbjct: 302 DIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVA 344


>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
 gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
          Length = 472

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   F   
Sbjct: 65  EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    + +    +D  +V +L     ++AI+F
Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q
Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398


>gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 430

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 188/347 (54%), Gaps = 11/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  G    T +Q+  + P L  +D++  AQTGSGKT+A+ L L      +    +P +
Sbjct: 19  ALARAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPDT 73

Query: 74  APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
           AP    AL + PTRELA QV   L  L A     +   V  GG S++ +   L+ GA IV
Sbjct: 74  APRVLGALVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADIV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L +S    +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT
Sbjct: 134 VATPGRLLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PAI +LAK   +D +R+ I +   Q   I  RA+ V    R   + ++L  H     +
Sbjct: 194 FPPAIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHAWPQLL 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R S  +  + L++     + L GELSQ  R   L+  +    +V +ATD+A RGI
Sbjct: 254 VFVASRHSAEKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           D+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 6   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 65  SFIK--------NKTTALILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQ 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 117 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ + +   L 
Sbjct: 177 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLG 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 237 NREG-SVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 296 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIR 350


>gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 567

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 203/365 (55%), Gaps = 11/365 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           GY   + +Q   +   L   D++  AQTG+GKT AF L L S       R  P+   P  
Sbjct: 36  GYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLS-------RIDPSRREPQM 88

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV    E  Y+K   GV V    GG  +  + + L+ GA I+V TPGRL
Sbjct: 89  LVLVPTRELALQVATACET-YSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATPGRL 147

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           CDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++FSAT+  +I  
Sbjct: 148 CDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRG 207

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +A+ + K    V IA++ +  + I+   ++V    +  +I  +L        I F  T+ 
Sbjct: 208 IAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQ 267

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVAARG+D+P +  
Sbjct: 268 ATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITH 327

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R     V     P  
Sbjct: 328 VLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVGEVRLPDA 387

Query: 376 EAIRE 380
           E + E
Sbjct: 388 ETVLE 392


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 185/342 (54%), Gaps = 9/342 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   +   G+   +++Q+  + P +  KD++  AQ+G+GKT  F +   +     
Sbjct: 47  ELPEELLRGIFSYGFEKPSAIQQRAIKPTILAKDLIAQAQSGTGKTATFAIGTLA----- 101

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R  P      AL +APTRELA Q+ + +  L     + V  C+GG +V  + R LQ G
Sbjct: 102 --RLDPKLRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDIRTLQAG 159

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ D I  + L +  ++   LDEADEML  GF+D I  I    P+  ++ +
Sbjct: 160 VHVVVGTPGRVFDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPETVQVCL 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
           FSAT+   +  + + + ++ VR+ +  +      I    + V   D +   + ++     
Sbjct: 220 FSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCDLYETLT 279

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI++C+TR  V    + + +  F V  + G++ Q+ER   ++  R G +RV I TD+
Sbjct: 280 ITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDL 339

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 340 LARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAI 381


>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
 gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
          Length = 509

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 185/355 (52%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +   + L   G+   T VQ   +   L  +D++  AQTG+GKT AF L +   +  + 
Sbjct: 47  ISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLPILEQIDHQ- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL + PTRELA+QV   +  +  +  + V    GG S+ R+ + L+ G H
Sbjct: 106 -----AKDVQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLERGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L +  +K +VLDEADEML +GF  D+E IL++S K R+   FS
Sbjct: 161 IVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTAFFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           ATI P+I  L + +    V V +         I      V     +  A+  IL     +
Sbjct: 221 ATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQEVYTVPRGWTKARALQPILELEDPE 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVF  T+ + +  T  L      V    G L+Q +R   L   R  + R  +ATD+AA
Sbjct: 281 SAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVATDIAA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           RG+D+  L  VI+ +L  N E+ +HR GRTGRAGR+G ++ ++ Q M RR  R+ 
Sbjct: 341 RGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLL-QPMDRRKLRMI 394


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E+         
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 409

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 196/359 (54%), Gaps = 16/359 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71
           ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + + + LL    E +R+  
Sbjct: 42  VAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCNPPEGERY-- 99

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
            + P A+ IAPTREL +Q+  + E L   TG+     IGG    ++   +Q+    +VV 
Sbjct: 100 LAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAKVQSRVVDLVVA 159

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           TPGRL D ++ + L +  ++ +VLDEAD MLD+GF   ++ I+ ++P+K  R+ L+FSAT
Sbjct: 160 TPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRKEDRQTLLFSAT 219

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LA+ +  D V V I  E    + +D R  LV   +R   ++ +LR   A + I
Sbjct: 220 FTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLKVLLKVLRGPDAVSTI 279

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + R  V    + L +       LSGE++Q  R+  L   + G+  V +ATDVA RGI
Sbjct: 280 VFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSGKIAVLVATDVAGRGI 339

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQNMQRRAERL 359
            +  +  V++  L  +PE+ +HR GRTGRAG  G+S+        F++P       ERL
Sbjct: 340 HVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDAFLLPDIETLLGERL 398


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 198/357 (55%), Gaps = 10/357 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +A+ + G+ + T +QE  +   +   D++  AQTG+GKT AF L + S L  EN   
Sbjct: 63  LVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPILSKLEPENKNI 122

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                  AL + PTRELA+QV    +           V I GG S   + R +++GA +V
Sbjct: 123 ------FALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSIRHGAQVV 176

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    +++S +  +V+DEADEML +GF DD+++IL+ +P +R   +FSAT
Sbjct: 177 VATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERHTALFSAT 236

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  +A+++    V V I S+    + +  R  +V+   + +A+  IL        +
Sbjct: 237 MPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVHKIDAMTRILEVEPYDAVL 296

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+         L        AL G++ Q++R   ++ +++G   + IATDVAARG+
Sbjct: 297 VFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAARGL 356

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFRE 362
           D+  +  V + ++  + E+ +HR GRTGRAGR+G ++ FV P+  +  R+ ER+ R+
Sbjct: 357 DVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQIERVTRQ 413


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 2/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q I +AL+ +  V+  ++Q   L   L  +D++  A+TG GKT+ FG+ +   +  +
Sbjct: 14  GVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFDD 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL + PTREL VQVG +L        V V    GG     + + L++G 
Sbjct: 74  ADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGT 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF   IE I+     + + ++F
Sbjct: 134 DLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243
           SAT+  AI  LA+ +    V +         ++   + V+      D+   I  +L+  G
Sbjct: 194 SATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARG 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ S +   + LA   FQV ++ G++SQ  R  +LQ  RDG   + +ATDV
Sbjct: 254 RGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   +    +HR GRTGRAG  G +V ++
Sbjct: 314 AARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLV 358


>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|75327677|sp|Q7Y183|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
           Japonica Group]
 gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
 gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 472

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 193/345 (55%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++  A    G+   T +Q   +   L  +D++   QTGSGKT AF L +   LL ++
Sbjct: 49  VPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQD 107

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A  ++PTRELA Q+G++ E L +  G+   V +GGV   ++   L    H
Sbjct: 108 K----PQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPH 163

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVVGTPGRL DH+   KG +++ LK +VLDEAD++L++ F+  ++ IL+  PK+RR  +F
Sbjct: 164 IVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKERRTFLF 223

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L +   ++ V+V +AS+      +      V    +D  +V++L      
Sbjct: 224 SATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHVLNELPGS 283

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T  S       L    F+ +++SG++SQ +R  AL   +     + I TDVA+
Sbjct: 284 MIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDVAS 343

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+  +++VI+ ++  N ++ +HR GRT RAG  G +V ++ Q
Sbjct: 344 RGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQ 388


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/350 (34%), Positives = 187/350 (53%), Gaps = 7/350 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D   P     AL
Sbjct: 57  GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLDYNVPECQ--AL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG S+  + R LQ G H+VVGTPGR+ D 
Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P   ++ +FSAT+ P    + +
Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITR 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 231 KFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 291 DMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           + +L + PEN LHR GR+GR GRKG+++  I ++ +R  + + R  NV V
Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQDIQRFYNVVV 400


>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
 gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 186/339 (54%), Gaps = 3/339 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+ N T +Q   +   L  KD++  AQTGSGKT AF L +   LL  + +    
Sbjct: 39  EACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPILQALLESSQK--SV 96

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  ++PTRELA+Q+  + E L +  G+   V +GGV + ++   L    HIVV TP
Sbjct: 97  QPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQTLILAKRPHIVVATP 156

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +VLDEAD +L+  F   ++ IL+  P+ R+  +FSAT++ 
Sbjct: 157 GRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVIPRDRKTYLFSATMTK 216

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++ V++  AS+      +  +   V    +D  +V IL       A+VF 
Sbjct: 217 KVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLVYILTEMSNSTAMVFT 276

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  + S    VL     + + ++G +SQ +R  AL   +     V I TDVA+RG+D+P
Sbjct: 277 RTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNVLICTDVASRGLDIP 336

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q
Sbjct: 337 SVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQ 375


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 177/341 (51%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   ++  GY   + +Q   + P    +DV   A+TG+GKT AF L +   LL    
Sbjct: 23  PRIVAN-VARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHRLLTGAG 81

Query: 68  RFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +P+  P    AL ++PTRELA Q    +       G+ VA+ IGG    R+ R L +G
Sbjct: 82  GAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQARALLDG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+    + + H   +VLDEAD MLDLGF +D+  I    P + + L+
Sbjct: 142 VDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPVRHQTLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SPAI+ L +      +++    +      I  + +    + +  +++ +LR    
Sbjct: 202 FSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLAVLRREAG 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+ +     + L        AL G+  Q  R   L   R GR  V +ATDV 
Sbjct: 262 GRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDVM 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ D+ LV++ ++   PE  +HR GRT RAGR+G ++
Sbjct: 322 ARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTAL 362


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 192/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 56  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 110 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 170 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V +   D + + + ++        +++F +TR  V
Sbjct: 230 KFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 290 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV+V   PA
Sbjct: 350 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQRFYNVTVEELPA 404


>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 433

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 194/354 (54%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E    +  S    L + PTRELA QV   +          V    GGV +  + + L+ 
Sbjct: 65  -EKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL +H+    +++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE  Q  R  AL+    G  RV +A
Sbjct: 241 KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
 gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
          Length = 438

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q+G  I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK 
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z]
 gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 413

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 191/342 (55%), Gaps = 8/342 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++  AL+++ +   T +Q   L   L+ KDV   AQTG+GKT+AF  A    LL    
Sbjct: 18  PQILA-ALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQP 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F   + P AL +APTRELAVQ+  + E L   T + +A+  GG    ++ + ++NG  I
Sbjct: 77  DFI-TNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIENGVDI 135

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMF 185
           ++GT GR+ D+++   +  + ++ VVLDEAD M DLGF  DI ++L    +PK R  ++F
Sbjct: 136 LIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKSRLTMLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SAT+S  +  LA     D   + I  E  Q +    +  L   S+RD    ++ +L    
Sbjct: 196 SATLSYKVRELAFEDMNDPEYIEI--EPLQKTGHRIKEELFYPSNRDKMALLMTLLEEEW 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +T+         LA    +V  L+G+++Q++R   L+   DG   + +ATDV
Sbjct: 254 PERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG  GMS+
Sbjct: 314 AARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSI 355


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score =  196 bits (498), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 23  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 82

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 83  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 141

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 142 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 202 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 262 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 322 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 356


>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
          Length = 398

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 193/343 (56%), Gaps = 6/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   +++ G+V  T +Q   +   +  +D++  AQTG+GKT AF L +   L+ +
Sbjct: 7   NLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPILHRLI-Q 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    S    L IAPTRELA Q+  ++  L   T +      GGV+++ + + L+ GA
Sbjct: 66  GKRGHVRS----LIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKLKRGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DH+  K ++++ ++ +V+DEAD M D+GF  DI  IL   P +R+ L+F
Sbjct: 122 EIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LAK+  KD + + + SE      + +    VA   +   ++ +L +  +K
Sbjct: 182 SATMPDEIKSLAKDILKDPITIKV-SETVPADTVSHAHYPVAQHLKTAFLLKLLEHINSK 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+       + LA+  F+  +L G LSQ  R  AL   R+GR +V +ATD+AA
Sbjct: 241 SVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  +  VI+ ++   P+  +HR GRTGRA + G +  +I
Sbjct: 301 RGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLI 343


>gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
 gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
          Length = 397

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 15  NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 74

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+
Sbjct: 75  PPPKERY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLE 132

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 133 ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 192

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++
Sbjct: 193 RQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLV 252

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +
Sbjct: 253 AQNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLV 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 313 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSI 358


>gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
 gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
          Length = 438

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 187/341 (54%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  + 
Sbjct: 18  PQVI-DGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTSA 76

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G  
Sbjct: 77  AEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184
           I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK R  ++
Sbjct: 137 ILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++     
Sbjct: 197 FSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 DRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   + + +
Sbjct: 29  ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV   +         + +V  +GG     + R L+ G  +++
Sbjct: 86  IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT 
Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248
             A+  +A+++  +  +V+I  E+   + ID         + ++N ++ +L     K A+
Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAARGI
Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364
           D+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E     L R+ +
Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382

Query: 365 VSVVWEPAP 373
           VS +    P
Sbjct: 383 VSTIEGLEP 391


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 186/337 (55%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +              AL
Sbjct: 52  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVINI------AVRETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L +G HIV GTPGR+ D 
Sbjct: 106 VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHIVSGTPGRVADM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 166 IRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 226 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 286 DWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 346 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVR 382


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 191/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+   +V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|157876834|ref|XP_001686759.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 527

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 210/390 (53%), Gaps = 12/390 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   Q +  A ++ G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LLA+  R +P  +   L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLAQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H+VVGTPGR+ DH+   KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K   +D V + +  +N     +    +    +   + +   
Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           + ++  V  V  P     ++ E + Q +LQ
Sbjct: 409 IEQQTGVKCVEYP-----SLPESEVQLVLQ 433


>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
          Length = 485

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 189/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 72  EACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK-----PQ 126

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 127 SL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATP 185

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 186 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 245

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q      ++ L +    +D  +V +L  +  ++AIVF
Sbjct: 246 KVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVF 305

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 306 TRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 365

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 366 PSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405


>gi|114643645|ref|XP_001153882.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 398

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 177/314 (56%), Gaps = 7/314 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT AF L + + LL    R        AL + PTRELA Q+  + E L
Sbjct: 5   RDIIGLAETGSGKTGAFALPILNALLETPQRL------FALVLTPTRELAFQISEQFEAL 58

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDE 156
            +  GV  AV +GG+    +   L    HI++ TPGRL DH+   KG N+  LK +V+DE
Sbjct: 59  GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 118

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD +L++ F  +++ IL   P+ R+  +FSAT++  +  L +   K+ V+  ++S+ +  
Sbjct: 119 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTV 178

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             +    + +    +D  +V IL      + ++FCST  +  R   +L    F  + L G
Sbjct: 179 EKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHG 238

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++SQ +R  +L   +     + +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT 
Sbjct: 239 QMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTA 298

Query: 337 RAGRKGMSVFVIPQ 350
           RAGR G ++  + Q
Sbjct: 299 RAGRSGKAITFVTQ 312


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 183/337 (54%), Gaps = 11/337 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA---SAP 75
           GY + T VQE  +   L  +DV+ +A+TG+GKT AF L          DR   A     P
Sbjct: 22  GYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTM-------DRLGHARHGQGP 74

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L L + PTRELA+Q+      +  ++G  V   +GGVS + +   L+ G  +++ TPGRL
Sbjct: 75  LLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQIDSLRRGTDVLIATPGRL 134

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +     +++ ++ +VLDEAD MLD+GF  D+  I+ + P +R+ L+FSATI  AI  
Sbjct: 135 IDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQRQTLLFSATIDSAIED 194

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
              +   + V V IA        I+   + V    +++ ++ +L   G    IVF  TR 
Sbjct: 195 NMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALLNERGGTRIIVFARTRH 254

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L +  F V  +  + SQ +R  A++ +  G+  + +ATDV ARGID+P++  
Sbjct: 255 RVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILVATDVLARGIDIPNVNY 314

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           V++ ++    E+ +HR GRTGRAG  G ++ FV P+N
Sbjct: 315 VVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPEN 351


>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 417

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++++ GY   TS+QE ++   +  KDVL SA TG+GKT AF L +A  LL +  R  P  
Sbjct: 14  SINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLL-DYPRTKPG- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+Q+G + E L   T +   V  GGV+       L +   I+V TPG
Sbjct: 72  FPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SPA 192
           RL ++I  +  +   ++ +VLDEAD MLDLGF + I  I+  +  +++ ++FSAT+ SP 
Sbjct: 132 RLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTMLFSATLESPG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVF 250
           +   A+    + V +  +  +R+   + ++ + +A   + + N +VN L+  G +  +VF
Sbjct: 192 VQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVF 250

Query: 251 CSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            + R +V   + K+ AE L   V L G++ Q +R+ A++  + G  +V +ATDVAARG+D
Sbjct: 251 ANKRETVQYLSGKLYAEEL-PCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  VI+ ++    +  +HR GRTGRAG+KG ++ ++
Sbjct: 310 IDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV 348


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 9/358 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RG+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         A
Sbjct: 52  RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD--YALLQCQA 105

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D
Sbjct: 106 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 165

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + 
Sbjct: 166 MLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 225

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           + +    VR+ +  +      I    V V   D +   + ++        +++F +TR  
Sbjct: 226 RKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRK 285

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 286 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           I+ +L + PEN LHR GR+GR GRKG+++  +  + QR    + +  NV V  E  PS
Sbjct: 346 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVV--EELPS 401


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   
Sbjct: 108 ITGVLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLG 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  
Sbjct: 168 DKRRPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGID 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FS
Sbjct: 227 VLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++
Sbjct: 287 ATMPKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRS 346

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AAR
Sbjct: 347 VIVFTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAAR 406

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE 362
           GID+P    V++ +    PE  +HR GRTGR G  G S+ +      ++  R  ER+ R 
Sbjct: 407 GIDVPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRS 466

Query: 363 ----ANVSVVWEPAP 373
                +  V   PAP
Sbjct: 467 KLSIKDAPVKLAPAP 481


>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
          Length = 485

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 190/342 (55%), Gaps = 8/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     
Sbjct: 70  LCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK----- 124

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S    L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HI+V 
Sbjct: 125 PQSL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVA 183

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+
Sbjct: 184 TPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATM 243

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAI 248
           S  + +L +    + +RV+I+S   Q      ++ L +    +D  +V +L  +  ++AI
Sbjct: 244 SSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAI 303

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+
Sbjct: 304 VFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGL 363

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 364 DIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 59  GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV +   P+   E 
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVLIEELPSNVAEL 412

Query: 378 I 378
           +
Sbjct: 413 L 413


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 39  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 98

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 99  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 158

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 159 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 218

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 219 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 278

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 279 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 338

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 339 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 398

Query: 373 PSVE 376
           P  E
Sbjct: 399 PGYE 402


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 191/341 (56%), Gaps = 7/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+  GY + T +Q   + P L  +D+L+SAQTGSGKT AF L +   ++ +  
Sbjct: 49  PELL-SALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKIIRDK- 106

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAH 126
             +       + + PTRELA QV   +    +KT  + +V  +GG     + R L  G  
Sbjct: 107 --ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNKGVQ 164

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGR  DH+    +++S L  ++LDEAD MLD+GF DDIE ++ ++PK R+ +M S
Sbjct: 165 IIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQTIMCS 224

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  +A ++  +  R++I +E +   +  Y A     + ++  + ++L       
Sbjct: 225 ATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYA--DDFNHKNRILDHLLTQKDVNQ 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F +T+ S     K L E   +   L G+L Q +R+  +  ++ G+  + +ATDVAAR
Sbjct: 283 AIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVAAR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           GID+  +  V + +L    E+ +HR GR+GRAGR G+++ +
Sbjct: 343 GIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINI 383


>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
          Length = 451

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 212/371 (57%), Gaps = 15/371 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA-LAIAP 82
           T +Q+  +   +  KDV+  A+TGSGKT AF + +  TLL      +P    L+ L + P
Sbjct: 48  TPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQTLLK-----TPGGGRLSCLVMTP 102

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RG 141
           TRELA Q+  + + L +  G+  A  +GG+ +  ++  L    H++V TPGRL DH+ + 
Sbjct: 103 TRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVIVATPGRLVDHLEKT 162

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           +G N+  LK +++DEAD +L+L F  +++ IL + P++R+ ++FSAT++  +  L +   
Sbjct: 163 RGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTMLFSATMTAKVKKLQRAAL 222

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           K+ V+++I S+ +       + + +  + ++  +V++L      + ++F ST A  S   
Sbjct: 223 KNPVKISINSKYKTVDKNIQKYMFIPEAHKECYLVSLLNELQGSSFMIFTSTCAKTSLIA 282

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           +++    +  V L G++SQQ+R  AL   +     + + TDVA+RG+D+P ++ VI+ ++
Sbjct: 283 RLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILVCTDVASRGLDVPHVDCVINYDV 342

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS----VEA 377
            +N ++ +HR GRT RAGR G SV  + Q      +++  EA++    +  P     V A
Sbjct: 343 PTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKI--EAHIGKKLDQWPCEKDEVMA 400

Query: 378 IRER--DAQRI 386
           ++ER  +A+RI
Sbjct: 401 LKERVDEAKRI 411


>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 467

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 186/345 (53%), Gaps = 9/345 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+  T +Q   + P +  +DVL  AQTG+GKT AFGL +   L+ E  R        AL
Sbjct: 20  GYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVLHRLV-EGGR----GQVRAL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   L  L  +T +      GGV+++ + + L+ G  IVV  PGRL DH
Sbjct: 75  VLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKKLKEGTDIVVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    +N+S ++ +VLDEAD+M D+GF  D+  IL + P KR+ LMFSAT+   I  LA 
Sbjct: 135 ISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPDDIRRLAH 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                 V V + S     + + +    V    +   +  +L++   ++ ++F  T+    
Sbjct: 195 EILCRPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFELLKHTDTESVLIFTKTKHRAK 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AARGID+  +  VI+
Sbjct: 254 RVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMVATDIAARGIDVSLISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
            ++   PE   HR GRTGRA + G +  ++    + M R  ER+ 
Sbjct: 314 YDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRSIERVL 358


>gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
 gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
          Length = 521

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 188/338 (55%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ S LL      +R+ 
Sbjct: 147 AIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQLLQTPPPKERY- 205

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 206 -MGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQLEEKFCDILV 264

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 265 ATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYKGERQTLLFSA 324

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  D   V I  E+     ++     VA SD+   + N++  +  +  
Sbjct: 325 TFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAGSDKYRLLYNLVTRNNWERV 384

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L +       +SG++ Q +R   L+  R+GR RV +ATDVA RG
Sbjct: 385 MVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGRIRVLVATDVAGRG 444

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG KG S+
Sbjct: 445 IHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSI 482


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 9/360 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   + + G+   T +Q       L+ ++++  + TGSGKT+AF L  A   +  
Sbjct: 136 SMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLP-AMIHINA 194

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELAVQ+  E +   + + +   V  GGV  H + R+L+ GA
Sbjct: 195 QPYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRELRAGA 254

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL DH+     N+  +  +VLDEAD MLD+GF   +  I+      R++LM+
Sbjct: 255 EICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQVLMW 314

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---- 241
           SAT    +  LA +Y +D  +V + S +   ++ D   ++   +D D    N+ RY    
Sbjct: 315 SATWPKEVQALANDYLQDFYQVTVGSLDLS-ANKDVTQIIEVCTDMDK-YRNLQRYLREN 372

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+      T+ L    FQ  A+ G+ SQ+ER  AL+  +  ++ + +A
Sbjct: 373 LSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTLLVA 432

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           TDVAARG+D+ D+ +V++ +     ++ +HR GRTGRAG+KG +V F +P    R A  L
Sbjct: 433 TDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLAREL 492


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 191/351 (54%), Gaps = 11/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           E + + GY   T++Q+  +   L  +D++  AQTGSGKT AF L +   LL+  D+  P 
Sbjct: 219 ENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLS--DKNPPN 276

Query: 72  ----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                + P+ + ++PTRELA+Q+  + +     + V VAV  GG S + +R  +  G HI
Sbjct: 277 TENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHI 336

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPK--KRRML 183
           +V TPGRL D +    ++ + LK  VLDEAD MLD+GF  D+E +L   S P   +R+ L
Sbjct: 337 LVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTL 396

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA  +  + + + +       +D++ +   V+  D+ + +V+IL    
Sbjct: 397 MFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEKAP 456

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+ +       L+E   Q  ++ G+  Q ER  AL   + G  +V +AT V
Sbjct: 457 NERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGV 516

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+ D++ VI+ +L  + +  +HR GRTGR G KG +     ++  R
Sbjct: 517 AARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDR 567


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/399 (33%), Positives = 211/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 323

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 324 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 383

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 384 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 443

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 444 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 502

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 503 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 562

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 563 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 601


>gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 618

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 181/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A T SGKT+ F L L    L E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTRSGKTLVFVLPLIMVALQEE 239

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQ-KTPPPVLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 531


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707]
          Length = 500

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/381 (32%), Positives = 203/381 (53%), Gaps = 15/381 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF +     L L++ +    
Sbjct: 21  QAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERLELSQKE---- 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              P  L + PTRELA+QV    +  YA+      V    GG S+  + R L+ GAH++V
Sbjct: 77  ---PQVLVLVPTRELAIQVAEAFQS-YARYLEDFHVLPIYGGQSMGNQLRQLKRGAHVIV 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R K L ++ L  V+LDEADEML +GF +D+E+IL   P KR++ +FSAT+
Sbjct: 133 GTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALFSATM 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             ++  +A  + +    + I  E      I+ R  LV+   + +A+  +L        I+
Sbjct: 193 PTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHKLDALTRMLEAEEYDATII 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +     K L    +   AL+G++ Q  R   +  ++     + +ATDVAARG+D
Sbjct: 253 FVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDIIVATDVAARGLD 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSVV 368
           +  +  V++ ++  +    +HR GRTGRAGR G  ++FV P+  +RR     + A    +
Sbjct: 313 VKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKRATGQPL 370

Query: 369 WE-PAPSVEAIRERDAQRILQ 388
           +E   PS + + +R  +R  Q
Sbjct: 371 YEMQLPSHQQVIDRRIERFKQ 391


>gi|328884859|emb|CCA58098.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 874

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/323 (36%), Positives = 177/323 (54%), Gaps = 16/323 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL +   +    D    R  P     AP AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPILERVTVPTDVEAGRAKPEQLTDAPQALVVVPTRELCQQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L        V V    GG +   +   L+ G  ++VGTPGRL D    + L++SH+K 
Sbjct: 71  NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHVKV 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I++  P KR+ ++FSAT+  A+  LA+ Y      +   S
Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINMLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATS 190

Query: 212 ENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
            + + + +       YRA  +   D+   +  IL+ +G   A++FC T+ + +   + L 
Sbjct: 191 PDGEGATVANIKQHVYRAHNM---DKPEMVSRILQANGRGLAMIFCRTKRTAADIAEQLE 247

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + 
Sbjct: 248 RRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDE 307

Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348
           +  LHR GRTGRAG KG +V ++
Sbjct: 308 KTFLHRVGRTGRAGNKGTAVTLV 330


>gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 415

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 198/368 (53%), Gaps = 6/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L ++G+   T +QE ++   L  KDV+  AQTGSGK+ +F L L      +
Sbjct: 7   NLSSTLQKTLQDKGFKKPTPIQEKVIPLVLNNKDVIAQAQTGSGKSASFVLPLLQLWSQK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCIGGVSVHRERRDLQ 122
            D        + L + PTREL +QV    E      AK   +V++ IGG S+  +  ++Q
Sbjct: 67  RDNAKKGKIKI-LVLTPTRELTLQVAEVFEEFSKDLAKKPQIVSL-IGGESIGEQLYNIQ 124

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V T GR  D ++ K +N+SHL  +VLDEAD+ML+  F ++++ +L+S P KR+ 
Sbjct: 125 QGCDVLVATSGRFLDVLKKKQMNLSHLNYLVLDEADKMLNFDFTEELDLVLESLPAKRQN 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT  P +  L      + + V I  +     +I  R + V    R   + ++L+ H
Sbjct: 185 LLFSATYPPKMLDLVSKIMSNPLHVTI-EQKPTVENIRQRVIEVDNEKRGPLLRHLLKEH 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF + + +     +   ++  +  + + +L Q  R++ LQ  ++ +  V  ATD
Sbjct: 244 KYKRVLVFMANKRATDNIAEKFRKYGIEAASFNADLEQDIRNDTLQAFKEAKINVLFATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +++ +I+ +L  +P + +HR GRT RAG+ G ++  I    Q   + + + 
Sbjct: 304 IAARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGEAISFINHETQEHFKLIEKR 363

Query: 363 ANVSVVWE 370
           +++ +  E
Sbjct: 364 SHIKLTRE 371


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 474

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 61  EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   PK+RR  +FSAT+S 
Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    +++    +D  ++ +L     ++ I+F
Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIF 294

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 295 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 185/337 (54%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR  V
Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L  N EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 338 NYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +G+AL+E      YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++   
Sbjct: 176 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSR 235

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  + ++ R+L+
Sbjct: 236 PPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELE 295

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 296 RGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 355

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  +A ++  D + + +         I  R   V  +D+ + ++++
Sbjct: 356 ERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDL 415

Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L        HG +   +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 416 LHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFK 475

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     ++
Sbjct: 476 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNES 535

Query: 352 ---MQRRAERLFREANVSV 367
              + R    L +EAN  V
Sbjct: 536 NTPLARPLSELMQEANQEV 554


>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 433

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 196/354 (55%), Gaps = 8/354 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   ++
Sbjct: 6   FSFSPEIL-RAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMV 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +      ++A + L + PTRELA QV   +          V    GGV +  + + L+ 
Sbjct: 65  EKPSETLKSNARV-LILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLKR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL +H+    +++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+ L
Sbjct: 124 GADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S A+  LA +     V+  + S ++Q++  D  + +V   ++      +    G
Sbjct: 184 LFSATFSSAVKKLANDMM---VKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            KN    +VF +TR +     K L         + GE  Q  R  AL+    G  RV +A
Sbjct: 241 KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           T+VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R
Sbjct: 301 TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEER 354


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 198/366 (54%), Gaps = 20/366 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPASAP 75
           YV  T VQ   +   L ++D++  AQTGSGKT AF   + S ++ +      R S    P
Sbjct: 169 YVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYP 228

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LA+ ++PTRELA Q+  E +    +TGV V V  GG  ++++ R+L+ G  I+V TPGRL
Sbjct: 229 LAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRL 288

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191
            D +    +++  +K + LDEAD MLD+GF   I  I   +D  P+ +R+ ++FSAT   
Sbjct: 289 NDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGERQTMLFSATFPR 348

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----- 246
            I  LA ++  + + + +         I  R   V  SD+ + ++++L  H  +      
Sbjct: 349 EIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESDKRSHLMDLL--HAQRETQDKQ 406

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         L  + F   ++ G+ +QQER  AL+  + GR  + +ATDVA
Sbjct: 407 SLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKSGRTPILVATDVA 466

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           ARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N   M R    L +
Sbjct: 467 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQMARLLAELMQ 526

Query: 362 EANVSV 367
           EAN  V
Sbjct: 527 EANQEV 532


>gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 206/369 (55%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   + + +
Sbjct: 29  ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV   +         + +V  +GG     + R L+ G  +++
Sbjct: 86  IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT 
Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248
             A+  +A+++  +  +V+I  E+   + ID         + ++N ++ +L     K A+
Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAARGI
Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364
           D+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E     L R+ +
Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382

Query: 365 VSVVWEPAP 373
           VS +    P
Sbjct: 383 VSTIEGLEP 391


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 181/346 (52%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ + +    Y   T +Q   L   L  +D+L  A+TGSGKT +F + +    L +  
Sbjct: 122 PNIVAD-IQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQHCLNQQP 180

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGA 125
                  P+AL +APTRELA Q+ RE++     +G  V  ++ +GGV +H +R DL+NG 
Sbjct: 181 -LRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRNGV 239

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGR  DH++    N+  +  VVLDEAD MLD+GF   I+ ++++ P K + L+F
Sbjct: 240 EVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPKHQTLLF 299

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y    V V I + +   +++  R        + + +V ++    A 
Sbjct: 300 SATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVALISAEVAA 359

Query: 246 N---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      IVF   +         L E      AL G L+Q ER  AL+    G  +
Sbjct: 360 EAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDFAKGDIK 419

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           V +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG KG
Sbjct: 420 VLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKG 465


>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 764

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 223/435 (51%), Gaps = 40/435 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR---- 68
           E+L  RG V L  +Q A  +P ++  D+L  A+TG+GKT+AF L +   L  E +     
Sbjct: 154 ESLKARGIVQLFPIQAASFDPIIKGMDLLGRARTGTGKTLAFSLPMIEVLKRERESNRHL 213

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAH 126
           FS    AP  L +APTRELA+QV RE + +   +G + + C  GG     +   +++G  
Sbjct: 214 FSQRGRAPRVLIMAPTRELAMQVHREFDSI--SSGELKSTCAYGGSPYDSQCNAMRDGID 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR------ 180
           ++VGTPGRL DHI    L ++ L+ + LDEAD+MLD+GF + +E IL    +++      
Sbjct: 272 VIVGTPGRLIDHIERGTLKLNQLRFICLDEADQMLDIGFAESMEKILQQVQEQKSKLTDA 331

Query: 181 ---RMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA-- 234
              ++L+FSAT+   I      Y K + V +++   ++Q +    +   +A   ++ +  
Sbjct: 332 PDHQVLLFSATMPVWIKQAVSKYMKPNKVTLDLIGTDKQKTSATVKHYAIASHWQNRSAL 391

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              IV I    GA   I+F  T+   +               L G++ Q++R   +Q  R
Sbjct: 392 LGDIVAIYGRGGAGRTIIFVETKGEANELAMNDKLVTMGTQVLHGDIQQKQREVTMQGFR 451

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G+    I T+V ARG+D+P+++LVI+ E  S+ E+ +HRSGRTGRAG+ G+ V     N
Sbjct: 452 EGKFTSLITTNVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGICVTFYKPN 511

Query: 352 MQRRAERLFREANVSVVWEPAP------------SVEAIRERDAQRILQDPL-----FLD 394
            +   + + R A V+ +   AP            ++E ++    +R+L+         L+
Sbjct: 512 QEYALQNIARHAGVNFIKIGAPQPKDIVAARASDTLETVKTDLDERVLEYFTNCAGDILE 571

Query: 395 SIQGDEKKMVDVLLA 409
             QGD  K +   LA
Sbjct: 572 HFQGDAIKALSATLA 586


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|46446899|ref|YP_008264.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400540|emb|CAF23989.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 407

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 184/343 (53%), Gaps = 6/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  +I +AL +  +   + +Q   +    +++D++  +QTGSGKT    + + + +  E
Sbjct: 21  NLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNRVNTE 80

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL I PTRELA+Q   E + +    GV      GG     ++  L++G 
Sbjct: 81  LTDIQ------ALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I  + +++SH++ ++LDEADEML +GF DD+ FI+       + L+F
Sbjct: 135 QVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK++ KD   VN+  E      +++  V      RD+ ++ +++ +   
Sbjct: 195 SATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCFVYCLAHQRDHELIQLIKENNPT 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC +R  V +  + L  HL  V  L   L+Q  R+      R G+ R+ +ATD+ A
Sbjct: 255 QAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVATDIVA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D   +  V   +LS   +  +HRSGRTGR G+ G+ + ++
Sbjct: 315 RGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLV 357


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 186/349 (53%), Gaps = 19/349 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------ASTLLAEND 67
           AL E G     ++QE  L   L   D++  A+TG GKT  FG+ L       +T  A  D
Sbjct: 52  ALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLHRISSGTTGTAALD 111

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE----WLYAKTG--VVVAVCIGGVSVHRERRDL 121
                  P AL I PTREL +QV ++LE    +L  +    + V    GG     +   L
Sbjct: 112 -----GTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRPYETQIATL 166

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF  DIE IL+  P KR+
Sbjct: 167 QKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILNMVPDKRQ 226

Query: 182 MLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT+   I TLA+ +  Q   +R   A ++  H             D+   +  +L
Sbjct: 227 TMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKAEMVARVL 286

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++F  T+ +  + +  LAE  F V ++ G+L+Q  R  AL+  R G+  V +
Sbjct: 287 QADGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFRSGKIDVLV 346

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 347 ATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLV 395


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YDVVECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV+V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVTV--EELPS 407


>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 579

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/342 (36%), Positives = 182/342 (53%), Gaps = 6/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE----N 66
           I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L  E    N
Sbjct: 12  ILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQRLSTEPRLTN 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +A  AL + PTRELA QV   +        +   V  GGV +  +   L+ G  
Sbjct: 72  RRG--VNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQIDKLRRGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH     L++S ++ +VLDEAD MLD+GF  DI+ +L   PK ++ L+FS
Sbjct: 130 ILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPKHKQSLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA    +D + + +   N     I      V  S +   + +I+  H    
Sbjct: 190 ATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTHIINEHNWSQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L ++  + +AL G  SQ  R+ ALQ  +DG  R  +ATD+AAR
Sbjct: 250 VLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRALVATDIAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 310 GIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLV 351


>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 430

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 198/339 (58%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++++ GY   TS+QE ++   +  KDVL SA TG+GKT AF L +A  LL +  R  P  
Sbjct: 27  SINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQHLL-DYPRTKPG- 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+Q+G + E L   T +   V  GGV+       L +   I+V TPG
Sbjct: 85  FPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVATPG 144

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SPA 192
           RL ++I  +  +   ++ +VLDEAD MLDLGF + I  I+  +  +++ ++FSAT+ SP 
Sbjct: 145 RLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQTMLFSATLESPG 204

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVF 250
           +   A+    + V +  +  +R+   + ++ + +A   + + N +VN L+  G +  +VF
Sbjct: 205 VQLFAEEVLNEPVFLE-SKPSRKEKAVIHQWLHLADDANHKLNLLVNTLKQEGVERTVVF 263

Query: 251 CSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            + R +V   + K+ AE L   V L G++ Q +R+ A++  + G  +V +ATDVAARG+D
Sbjct: 264 ANKRETVQYLSGKLYAEEL-PCVWLEGKMPQDKRNKAIERFKKGEVKVLVATDVAARGLD 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  VI+ ++    +  +HR GRTGRAG+KG ++ ++
Sbjct: 323 IDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV 361


>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
 gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
          Length = 540

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 189/352 (53%), Gaps = 5/352 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L   L A+ D+  P   
Sbjct: 38  LDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQRL-AQQDKARPGH- 95

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L +APTRELA+Q+   +E L     + V    GGVS   + + L+ G  +VV  PGR
Sbjct: 96  PIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGR 155

Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L D + G+GL ++  ++  VLDEAD M DLGF  ++  IL ++P++ + L+FSAT+   +
Sbjct: 156 LLD-LMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQRLLFSATLDNGV 214

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TL K +  D ++ ++         + +R  +VA     + IV  L   G    I+F  T
Sbjct: 215 DTLVKEFLHDPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL-ASGEGQRILFTRT 273

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L +     V L G +SQ  R  A++    G+  V +ATD+AARGID+  +
Sbjct: 274 KHLARRLARKLVQAGIPAVELQGNMSQNARERAMRAFSTGQVHVMVATDIAARGIDVSGV 333

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L ++A +
Sbjct: 334 ELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLLKKARI 385


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 180/335 (53%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL    +   T +Q   +   L   D+L  AQTG+GKT+AFGL L   LLA+  + +
Sbjct: 13  LNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLIDHLLAQPGKPA 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +A  AL +APTREL  Q+   L  L  KT + VA  +GG S++++   L  G  I+V 
Sbjct: 73  PKTAK-ALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFLSRGTDILVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    +++S ++ +VLDEAD+MLD+GF   +  I       R+ ++FSAT+ 
Sbjct: 132 TPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L++ Y  +  RV ++   +    I      V    +   +  IL        +VF
Sbjct: 192 KQMEELSRAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAKPAKLREILSADMDALTLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L    +   ++ G  SQ +R  A++  R G   + +ATDVAARGID+
Sbjct: 252 SRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +  VI+ +L   P+N +HR GRT RAGR+G ++
Sbjct: 312 PGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAI 346


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 190/337 (56%), Gaps = 6/337 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T VQ + +      KD+L S++TGSGKT+AF L     ++  +  FS  S P  +
Sbjct: 20  GFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQRVM-RSKAFS-RSGPRVV 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL  QV  EL  L A T     + +GG + + + ++ +     +V TPGRL DH
Sbjct: 78  VLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEFRKNPAFIVATPGRLADH 137

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTL 196
           +  + L++  L+ ++LDEAD MLDLGF   ++ I  ++  +RR  LMFSAT+    +  +
Sbjct: 138 LEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRRQTLMFSATLDHQQVNEI 197

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRA 255
           A +  KD  RV I   N +H DI+ R  L    D   A+++ ++     +  ++F +TRA
Sbjct: 198 AADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQALLDRVMEQESYQQVMIFTATRA 257

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              R      E   + VALSG+LSQ  R+  +     G  +V + TDVA+RG+D+ ++  
Sbjct: 258 DTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHKVLVTTDVASRGLDISNVSH 317

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           V++ ++  + E  +HR GRTGRAG KG+++ FV P++
Sbjct: 318 VVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKD 354


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -AYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 459

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 193/371 (52%), Gaps = 3/371 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +ALS + Y   T +Q+  +   L+  D+   AQTG+GKT AF L  +    A N + +
Sbjct: 12  ILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALP-SLDYFARNPKPT 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P      L ++PTRELA Q+ +          + V    GGV ++R+ + L  G  IVV 
Sbjct: 71  PVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKALSQGVDIVVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  +   I   +  VLDEAD+M+D+GF   ++ +    P  R+ L FSAT+ 
Sbjct: 131 TPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDRQNLFFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +  D V+V++A ++     +  +A  V  +++   +  +L       A++F
Sbjct: 191 KEIEALAGQFLNDPVKVSVAPQSTTAERVRQQATFVNQAEKQALLHIVLETEDIDRALIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  + L        A+ G  SQ +R+ ALQ  R G+ ++ +ATD+AARGID+
Sbjct: 251 TRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKLLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  VI+ E+ + PE  +HR GRT RAG +G+++  +  + +   + + R   V +   
Sbjct: 311 SGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERATRVKLDVA 370

Query: 371 PAPS--VEAIR 379
           P P   +EA+R
Sbjct: 371 PLPENFLEAVR 381


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 33  GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 92  ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 152 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 212 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 271

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P    V++
Sbjct: 272 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 331

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +    PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 332 YDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 391

Query: 371 PAP 373
           PAP
Sbjct: 392 PAP 394


>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
 gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
          Length = 472

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +DV+  A+TGSGKT AF L +   L+ +     P 
Sbjct: 59  EACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPILQALMDK-----PQ 113

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+  ++E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 114 SM-FGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 172

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   PK+RR  +FSAT+S 
Sbjct: 173 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 232

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  + +    + +    +D   V +L     ++ IVF
Sbjct: 233 KVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKDIYFVYLLNEFPGQSVIVF 292

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 293 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 352

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 353 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQ 392


>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 452

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 196/349 (56%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + + + G+   T +Q   L   L  KDV   AQTG+GKT AF + L + LLA 
Sbjct: 7   SLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLFTKLLA- 65

Query: 66  NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               SP++A       P AL +APTREL VQ+ ++ + L +  G  +    GG+   +++
Sbjct: 66  ----SPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQK 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA IV+GTPGRL D+++ K  ++ H++ +V+DEAD M D+GF  D+ +IL   P 
Sbjct: 122 NALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLPP 181

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ LMFSAT++  +  L+  +     +V++  E      ++     V+  ++   ++
Sbjct: 182 FDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVLYHVSNKEKFPLLL 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +LR  G    ++F +T+    R    L  + F    +SG++ Q++R N L+  + G   
Sbjct: 242 GLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKRGELA 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 302 ILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAI 350


>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
 gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 474

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 61  EACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 115

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 116 SM-FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATP 174

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   PK+RR  +FSAT+S 
Sbjct: 175 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYLFSATMSS 234

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    +++    +D  ++ +L     ++ I+F
Sbjct: 235 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNEFPGQSVIIF 294

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 295 TRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILVATDVAARGLDI 354

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 355 PSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQ 394


>gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 395

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 9/326 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+   + +Q A +   L  KDV+  A+TGSGKT AF L +   + AE        
Sbjct: 20  AVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLPILERVDAEK------G 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL+ Q+  E   L  K  +    C+GG ++  +  DL+ GA +V+GTPG
Sbjct: 74  YPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDLKKGAQLVIGTPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D ++   L+ S LK VVLDEAD MLD+GFR DIE IL   P +R+ L+ SAT+   +
Sbjct: 134 RIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQTLLLSATLPAPV 193

Query: 194 TTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA+ Y  D  RV+++    + Q+S   +  V V    +   ++ +L     +  +VF 
Sbjct: 194 ARLAQKYMNDPERVDVSHIGADSQNSITQF-YVPVDQDRKFRTLIRVLSQEKPQQVLVFT 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+       +  +  L ++  + G+LSQ  R   L   RDGR R+ IATDV  RGID+ 
Sbjct: 253 RTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIATDVMGRGIDIS 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGR 337
            +  +++ ++  + ++ +HR GRTGR
Sbjct: 313 GISHIVNYDVPMDCDDYVHRIGRTGR 338


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 182/345 (52%), Gaps = 2/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q I +AL+ +  V+  ++Q   L   L  +D++  A+TG GKT+ FG+ +   +  +
Sbjct: 14  GVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLDRIFDD 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL + PTREL VQVG +L        V V    GG     + + L++G 
Sbjct: 74  ADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKALKDGT 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF   IE I+     + + ++F
Sbjct: 134 DLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEHQTMLF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243
           SAT+  AI  LA+ +    V +         ++   + V+      D+   I  +L+  G
Sbjct: 194 SATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARG 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ S +   + LA   FQV ++ G++SQ  R  +LQ  RDG   + +ATDV
Sbjct: 254 RGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D+  VI+ +   +    +HR GRTGRAG  G +V ++
Sbjct: 314 AARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLV 358


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +G+AL+E      YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++   
Sbjct: 177 LGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRSR 236

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  + ++ R+L+
Sbjct: 237 PPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELE 296

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 297 RGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 356

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  +A ++  D + + +         I  R   V  +D+ + ++++
Sbjct: 357 ERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMDL 416

Query: 239 LR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L        HG +   +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 417 LHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSFK 476

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     ++
Sbjct: 477 SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNES 536

Query: 352 ---MQRRAERLFREANVSV 367
              + R    L +EAN  V
Sbjct: 537 NTPLARPLSELMQEANQEV 555


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 183/340 (53%), Gaps = 2/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   +L++  R
Sbjct: 10  EPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-MLSKGPR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ ++
Sbjct: 69  VRQNQV-RALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT
Sbjct: 128 VATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK    + V ++++  N     ++     V    +   +  +++ +  +  +
Sbjct: 188 FSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKDNDWRQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++ +  L E       + G  SQ  R+ AL+  + G+ RV +ATD+AARGI
Sbjct: 248 VFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 308 DIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLV 347


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 7/368 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPAS 73
           LSE G  N T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +   R + + 
Sbjct: 21  LSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSK 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TPG
Sbjct: 81  EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    I
Sbjct: 141 RLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSKI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A    +D + V +   N     +      V    +   +  ++     +  +VF  T
Sbjct: 201 KAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTKT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  L
Sbjct: 261 RQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQL 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV----- 368
           E V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N  +      
Sbjct: 321 EQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNTRLPQEWLK 380

Query: 369 -WEPAPSV 375
            +EP+P V
Sbjct: 381 GFEPSPVV 388


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 186/343 (54%), Gaps = 13/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           + L + G  + T +QE         KDV+  AQTG+GKT+AF L L   +       SP 
Sbjct: 14  QVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLFENI-------SPD 66

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL I PTRELA+Q+  E   L     + V    GG ++  +   L+   H+++ T
Sbjct: 67  IEATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLKKSIHLIIAT 126

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  + + +  +K+VV+DEAD+ML +GFR++++ IL  +P+ R+ L FSAT++P
Sbjct: 127 PGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQTLCFSATMAP 186

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LA  Y  D   + I ++      I  +  LV  +DR   +A+  +L       AI+
Sbjct: 187 NVKRLAYRYSYDPTMITIEAKKVAVESI--KQELVETTDRWKADALCQVLEEDNPFLAII 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+    +    + +  F    +  +++Q +R   L+  R+   +  IATDVA+RG+D
Sbjct: 245 FCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLIATDVASRGLD 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  +  + + ++   PE  +HR GRTGRAG +G + +FV P++
Sbjct: 305 ISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKD 347


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 192/352 (54%), Gaps = 12/352 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F+   I   + + L   G    T VQE  + P +R   D +V AQTG+GKT+AF   
Sbjct: 1   MTTFQELGIRPALCDVLRSHGIKEATPVQEKAM-PLVRAGHDCIVKAQTGTGKTLAF--- 56

Query: 58  LASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               LL   ++  P A+   AL I PTRELA+Q+ +  + L A   +   V  GG  + R
Sbjct: 57  ----LLPIIEKIKPQAAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIER 112

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L+    +++GTPGRL DH+R + +++S +  VVLDEADEM+ LGF +D+E +L+++
Sbjct: 113 QKQKLRRHPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEAT 172

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R++++FSAT+   +  L+  Y      + I SE+     ID   +      + + + 
Sbjct: 173 AADRQLMLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLC 232

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+       A+VFC T+      T  LA   + V  L G+LSQ +R+  L+  R    +
Sbjct: 233 EIINQEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQ 292

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  ATD+AARG+D+  +  V + ++  + E+ +HR GRTGRAG +G ++  +
Sbjct: 293 ILCATDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFV 344


>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+ ++GY   +++Q   +   L  +DV+ +AQTG+GKT  F L L   L   EN + 
Sbjct: 16  ILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLEILSKGENAQS 75

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A   L + PTRELA QV   ++       +   V  GGV ++ +   L+ GA I++
Sbjct: 76  NQVRA---LVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMALRRGADILI 132

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+ D    K +    L+ +VLDEAD MLD+GF  DI+ IL   PKKR+ L+FSAT 
Sbjct: 133 ATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFSATF 192

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           SP I  LAK    + + +++   N     ++     V    +   ++ ++       A+V
Sbjct: 193 SPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWLHPVDKKRKTELLIQLIADGRWDQALV 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++ TK L +   +  A+ G  SQ  R+ AL   ++GR R+ +ATD+AARG+D
Sbjct: 253 FSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRILVATDIAARGLD 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 313 IEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLV 351


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 189/342 (55%), Gaps = 6/342 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +      +DVL  AQTG+GKT +F L +   L +   +   A 
Sbjct: 15  AIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMIDILASGKAK---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P +L +APTRELA QV      LY K   + +A+ IGG S++ +++ L  G  +++ TP
Sbjct: 72  MPRSLILAPTRELATQVSENF-TLYGKYQKLSMALLIGGESMNEQQKVLDRGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      + +  +K +V+DEAD MLD+GF  D+E I+   PK R+ L FSAT+   
Sbjct: 131 GRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQTLFFSATMDKE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +  +   V I    +    ++   ++V  S++  A+  +LR     NA +FC+
Sbjct: 191 IRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTNAFIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +  V    K L+ H F ++AL G++ Q  R+  L+  +    ++ + +DVAARGID+ +
Sbjct: 251 RKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSDVAARGIDVTE 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           +  V + ++ ++PE+ +HR GRTGRAGR G +     P++ +
Sbjct: 311 VSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAK 352


>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 184/339 (54%), Gaps = 4/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSP 71
           A++E+GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L ++ +    S 
Sbjct: 15  AVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPMLHRLSSDKNVKSTSH 74

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
             +P+ AL + PTRELA QV   +        +   V  GGVS++ ++R L+ G   I+V
Sbjct: 75  GYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKRLLKEGRVDILV 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH++   +N+SH++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F AT 
Sbjct: 135 STPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFATF 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA         + +A  N     +  +   V    +   + +++R       +V
Sbjct: 195 SEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKVDRDKKRQLLAHLIRQDNWYQVLV 254

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  K L E   Q +A+ G  SQ  R++ L   ++   +V +ATD+AARG+D
Sbjct: 255 FTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKNNSLQVLVATDIAARGLD 314

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 315 ISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLV 353


>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 436

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/341 (36%), Positives = 179/341 (52%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ +GY N T +Q   +       D+L  AQTG+GKT AF L +   +L EN       
Sbjct: 15  AIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIVQ-MLGENIPPDKRR 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV  ++     +  +   +  GGV++  +   L  G  IVV TPG
Sbjct: 74  RPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     +N+S +K +VLDEAD MLDLGF D I  +    P KR+ L+FSAT S +I
Sbjct: 134 RLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKRQTLLFSATYSQSI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCS 252
             LA        R+ +A  N   +D   +AV      R   +++ L   G  N + VF  
Sbjct: 194 KQLADELLNQPRRIEVARRN-IAADAVTQAVYQIERSRKREMLSFLIRTGRWNQVLVFAR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR    + T+ L     +  A+    SQ  R+  L   + G  RV +ATDVAARG+D+  
Sbjct: 253 TRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRVLVATDVAARGLDIER 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           L  V++ +L   PE+ +HR GRTGRAG  G+++ ++ +  Q
Sbjct: 313 LPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQ 353


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L  +            L
Sbjct: 50  GFEKPSAIQQRAIAPVIKGRDVIAQAQSGTGKTATFSISILQSLEIQ------TRETQIL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 104 VLSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRKLDYGQHIVSGTPGRVFDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 164 IRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 224 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R+G++RV I TDV ARGID+  + LVI
Sbjct: 284 DWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVLITTDVWARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 NYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 6/330 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T +Q   +   L  +D++  AQTG+GKT +F L +   LL    R    
Sbjct: 14  DALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVVHRLLGGPRRTR-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTREL +QV   +    +++ V V    GGV    + + L+ G  +VV TP
Sbjct: 72  ----VLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKALRRGVDVVVATP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  + ++ ++L+ +VLDEAD MLD+GF   I  I+D  P+ R+ L+FSAT+ P 
Sbjct: 128 GRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYRQTLLFSATMPPE 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L + Y +  V V +   +   + + +    V    ++  +V++L     ++ +VF  
Sbjct: 188 VEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHRKNELLVHLLTNSDHESVLVFTR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T++   R    LA+      A+  + SQ+ER  AL+  + G+ RV +ATD+A RG+D+  
Sbjct: 248 TKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLVATDIAQRGLDISG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  VI+ ++   PE+ +HR GRTGRA   G
Sbjct: 308 ITHVINFDVPQQPEDYVHRIGRTGRAASTG 337


>gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1]
 gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 492

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL
Sbjct: 107 FKLAPELM-HAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLL 165

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + 
Sbjct: 166 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 223

Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 224 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 283

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  D   V I   N  + +++     VA +D+   + N
Sbjct: 284 SERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFN 343

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +G +  IVF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV
Sbjct: 344 LVNDNGWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRV 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 404 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 451


>gi|333024583|ref|ZP_08452647.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332744435|gb|EGJ74876.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 527

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/315 (37%), Positives = 177/315 (56%), Gaps = 10/315 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVGRELEW 96
           A+TG+GKT+ FGL L   +    D    R +P   + AP AL + PTREL  QV  +L+ 
Sbjct: 5   AKTGTGKTLGFGLPLLERVTVAADVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQT 64

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
                 V V    GG +   +   L+ G  +VVGTPGRL D    + L++S ++A+VLDE
Sbjct: 65  AGKVRDVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDE 124

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           ADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+ +LA+ Y      +N  S + + 
Sbjct: 125 ADEMLDLGFLPDVEKIVAMLPVKRQTMLFSATMPGAVVSLARRYMSQPTHINATSPDDEG 184

Query: 217 SDI--DYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
           + +    + V  A S D+   +  IL+  G    ++FC T+ + +  ++ L    F   A
Sbjct: 185 ATVANTEQHVFRAHSMDKPEMVARILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGA 244

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR G
Sbjct: 245 VHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIG 304

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAGR G +V ++
Sbjct: 305 RTGRAGRSGTAVTLV 319


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 182/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|68464953|ref|XP_723554.1| hypothetical protein CaO19.4870 [Candida albicans SC5314]
 gi|74656726|sp|Q5APT8|DBP3_CANAL RecName: Full=ATP-dependent RNA helicase DBP3
 gi|46445590|gb|EAL04858.1| hypothetical protein CaO19.4870 [Candida albicans SC5314]
          Length = 564

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 185/318 (58%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + ++   +  + +     L I+PTRELA+Q+   L
Sbjct: 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLS----VLCISPTRELALQIYDNL 243

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L A +GV      GGVS   + R ++  A++VV TPGRL D I    +N+  +  +VL
Sbjct: 244 IELTADSGVNCVAVYGGVSKDDQIRKIKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 302

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++S  +R+ LMF+AT    +  LA N+    V+V +   +
Sbjct: 303 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 362

Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266
              ++     V+  ++  D++  ++ +LR + A  +     ++F   +   SR    L  
Sbjct: 363 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 422

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + F V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P++++VI+       E
Sbjct: 423 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 482

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG KG +
Sbjct: 483 DYVHRIGRTGRAGAKGTA 500


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 193/370 (52%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L   
Sbjct: 43  NLHENLLRGIYAYGFEKPSAIQQKGIVPFGKGLDVIQQAQSGTGKTATFCAGILQNL--- 99

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              ++      AL +APTRELA Q+ + +  L     V    C+GG SV  + R LQ+G 
Sbjct: 100 --DYTLVECQ-ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQSGV 156

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 157 HVVVGTPGRVYDMLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 216

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   D + + + ++      
Sbjct: 217 SATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAI 276

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  + E    V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 277 TQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLL 336

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +NPEN LHR GR+GR GRKG+++  +  + +R  + + R  N
Sbjct: 337 ARGIDVQQVSLVINYDLPNNPENYLHRIGRSGRFGRKGVAINFVTNDDERLLQDIQRFYN 396

Query: 365 VSVVWEPAPS 374
              V E  PS
Sbjct: 397 --TVIEELPS 404


>gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
 gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
          Length = 440

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  +   L+ +D++ SAQTG+GKT  F L L   LL +N +     
Sbjct: 15  AVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKSGKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   +   V +A  N     +     LV    +   +  ++     +  +VF  
Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 AGYEPDPSIKA 384


>gi|332141363|ref|YP_004427101.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551385|gb|AEA98103.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 441

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 189/337 (56%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +    LT +QE  + P ++ KD++ S++TGSGKT AF +   + L+A+  +      
Sbjct: 16  LESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMAQ--KALSRQD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA QV  E + +     +  ++ +GG + + + + L+   HI+VGT GR
Sbjct: 74  PRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNPHIIVGTAGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192
           + DH+  K + ++ L+ ++ DEAD MLDLGF   ++ I D +  +KR+ ++FSAT+ +  
Sbjct: 134 VADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLFSATLDNIE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFC 251
           +  +     K AVRV +     +H DI+ +       D  + I+   L       AIVF 
Sbjct: 194 LKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R   +L E   + +AL G++ Q +R+  +     G+  + + TD+A+RG+DL 
Sbjct: 254 ATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLS 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + LV++ +L  N +  +HR GRTGRAG+KG +  +I
Sbjct: 314 KVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLI 350


>gi|289424994|ref|ZP_06426773.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289427671|ref|ZP_06429383.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|289154693|gb|EFD03379.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289159162|gb|EFD07354.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|332676187|gb|AEE73003.1| DEAD-box ATP-dependent RNA helicase 3 [Propionibacterium acnes 266]
          Length = 700

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + 
Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L
Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    G
Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDV
Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A
Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587

Query: 364 NVSVV 368
            V  V
Sbjct: 588 GVKPV 592


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      FS 
Sbjct: 198 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGAAASCFSE 257

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + RDL  G +++ GT
Sbjct: 258 MQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCNVLCGT 317

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ ++ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 318 PGRLLDMIGRGK-VGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 376

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K D + + +       SD++   V V    +   ++++L+  G++
Sbjct: 377 ATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSE 436

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+        +L +  F   ++ G+  Q +R  AL   R G+  V +AT V A
Sbjct: 437 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 496

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 497 RGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 536


>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 453

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 188/337 (55%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192
           L DHI  + L +S L+ ++ DEAD +LDLGF + ++ I + +  + R+ L+FSAT+  A 
Sbjct: 134 LADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRLRQTLLFSATLDHAQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           +  L++N  K   ++ +++ N QHSDI     L    D   A++ + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR+  SR ++ L    F+ VAL+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRSDTSRLSEALNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLV 350


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/382 (33%), Positives = 205/382 (53%), Gaps = 28/382 (7%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN+   P ++  A+ E G+   T VQ + +   L   D++VS+QTGSGKT AF L    
Sbjct: 3   FENLGLAPALL-SAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLA---LAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIG 110
            +        PA+  +    L + PTRELA+QV       GR+L  L        A  +G
Sbjct: 62  RIAQ-----MPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLR------TATVVG 110

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+    + + L     ++V TPGRL DH+    + ++ +  +VLDEAD MLD+GF +DIE
Sbjct: 111 GMPYGAQLKALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIE 170

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--L 228
            I+   P+ R+ L+FSAT+   I  LA    +D  R+ +A    +H++I  +++L A   
Sbjct: 171 TIVGRLPEDRQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNI-TQSLLYADDA 229

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S +   + ++LR      AIVF ST+         LA+  F   AL G+++Q++R+  L 
Sbjct: 230 SHKMQLLDHVLRDAALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLS 289

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++ G+ R+ +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  + 
Sbjct: 290 QLQRGQLRILVATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLA 349

Query: 349 PQNMQRRAERLFREANVSVVWE 370
             + + +  R+      S+  E
Sbjct: 350 THSERHKVRRIEHYIGQSITPE 371


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 193/346 (55%), Gaps = 14/346 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+G     ++QE  L   L   D++  A+TG GKT+AFG+ L + + A     +   
Sbjct: 24  ALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLLNRITAGVGVRALNG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHI 127
            P AL + PTREL +QV  +L    ++L A+    ++V    GG     +   L+ GA +
Sbjct: 84  TPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRPYEPQIEALRAGADV 143

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P++R+ ++FSA
Sbjct: 144 VVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILRQIPEERQSMLFSA 203

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           T+   I TLA+ +  Q   +R         H   +   YRA  +   D+   +  IL+  
Sbjct: 204 TMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHAL---DKVEMVSRILQAE 260

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R+G   V +ATD
Sbjct: 261 GRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFRNGDIDVLVATD 320

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 321 VAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLV 366


>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 183/335 (54%), Gaps = 2/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS +GY   T +Q   +   L  KDV+ +AQTG+GKT AF   L   LL  N+R + A+
Sbjct: 15  ALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLLE-LLKSNER-AKAN 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA QVG  +  L A   +  AV  GGV ++ +   L+ G  I+V TPG
Sbjct: 73  TARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMKLRKGVDILVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT S  I
Sbjct: 133 RLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKRQTLLFSATFSDDI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK   K  V +++A  N     I+     V  S +   ++ +L+       +VF  T
Sbjct: 193 RALAKGLLKSPVEISVALPNATAEPIEQTLYEVQKSQKLGLLLKLLKSLDLPQVLVFSRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  K L +  F   A+    SQ  R+ AL   +  + ++ IATD+A+RGID+  L
Sbjct: 253 KQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQMLIATDIASRGIDIEKL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             VI+ +L    E+ +HR GRTGRAG+ G ++ ++
Sbjct: 313 PYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLV 347


>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 426

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 188/341 (55%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L   LL+++   S
Sbjct: 12  IIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH-LLSQDSLKS 70

Query: 71  PASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +S   P+ AL + PTRELA QV   +        +   V  GGVS++ +++ L+    I
Sbjct: 71  ASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQKQRLKGRVDI 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F A
Sbjct: 131 LVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFFA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA         + +A  N     +  +   +    + + + +++R       
Sbjct: 191 TFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+AARG
Sbjct: 251 LVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++
Sbjct: 311 LDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 351


>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
 gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/354 (34%), Positives = 202/354 (57%), Gaps = 16/354 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E+LS       +++Q+A +   ++ KD +  A+TGSGKT+AF    A+ +LAE 
Sbjct: 8   LPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAF----AAPMLAEW 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P      L + PTRELA+Q+  +   L A   + VA+  GGV + ++  +LQ   H
Sbjct: 64  SK-DPCGI-FGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPH 121

Query: 127 IVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            V+ TPGRL DHIR  G +       ++ VV+DEAD +L  GF  D++  +D    P KR
Sbjct: 122 FVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPDPSKR 181

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+F+AT++ A+  L  +  +K    ++ IAS+    S +    + +    R+  +  I
Sbjct: 182 QTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWAI 241

Query: 239 LRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           L +  +  K+AI+F +   +     ++L     +  +L  E+ QQER NAL   R   AR
Sbjct: 242 LTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAAR 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           V +ATDVA+RG+D+P +E+VI+ +L ++ ++ +HR GRT RAGRKG SV ++ +
Sbjct: 302 VLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTE 355


>gi|315090516|gb|EFT62492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 491

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 11/362 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
            +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A 
Sbjct: 26  GVPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSAT 85

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  +
Sbjct: 86  PREDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFK 139

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + 
Sbjct: 140 RGVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQR 199

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    
Sbjct: 200 LLFSATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRS 259

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G  + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATD
Sbjct: 260 G--HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+
Sbjct: 318 VAARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQ 377

Query: 363 AN 364
           A 
Sbjct: 378 AG 379


>gi|291004226|ref|ZP_06562199.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 184/360 (51%), Gaps = 6/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL + G      +Q A +   L  +DVL   QTGSGKT+AFGL L    LA 
Sbjct: 52  GLPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPL----LAM 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P  L + PTRELA QV   L+ L    G+ V   +GG+S  R+   L+ G 
Sbjct: 108 QGSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGV 167

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+R     +S ++   LDEAD+M D+GF   +  +LD  P   + L+F
Sbjct: 168 DVLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLF 227

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V  ++A        +D+  +LV    + + +  I    G  
Sbjct: 228 SATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQDVLARIGAREG-- 285

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R T+ L     +  AL G  +Q  RS  L+  R G     +AT+VAA
Sbjct: 286 RTIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAA 345

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H E  ++P++ LHR+GRT RAG  G  V ++  + +R    +  +A V
Sbjct: 346 RGIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGV 405


>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 442

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 179/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE GY   + +Q   +   L+  D+L  AQTG+GKT  F L L   L   +++ +  S
Sbjct: 15  AVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQRL---SEKPAQKS 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV            +   V  GGVS+  +   L+ G  I+V TP
Sbjct: 72  RPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTLRQGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K +++S ++ +VLDEAD MLD+GF  DI  IL   P +R+ L+FSAT S  
Sbjct: 132 GRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQNLLFSATFSDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA    K    + +A  N     +D     +    +   + +++     +  +VF  
Sbjct: 192 IKRLADGLLKSPTLIEVARRNTAAEQVDQAIYRIDKGLKRALLSHLISGQNWQQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    LA+      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+  
Sbjct: 252 TKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVLVATDIAARGLDIEQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL + PE+ +HR GRTGRAG  G ++  +
Sbjct: 312 LPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFV 347


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTSPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|302557418|ref|ZP_07309760.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302475036|gb|EFL38129.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 485

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 194/358 (54%), Gaps = 10/358 (2%)

Query: 12  GEALSERGYVNLT---SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           G+ L+E G   +T    +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +  R
Sbjct: 66  GQLLAELGKQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ--R 123

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P   PL L + PTRELA QV   L       G+ +A  +GGVS+ R+   L+ GA +V
Sbjct: 124 AEPRR-PLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGVSIGRQAGALRGGAEVV 182

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSA 187
           V TPGRL D I      ++H+   VLDEAD+M D+GF   +  +LD   P+ +RML FSA
Sbjct: 183 VATPGRLKDLIDRGDCGLNHVGVTVLDEADQMTDMGFMPQVTALLDQVRPEGQRML-FSA 241

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G    
Sbjct: 242 TLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQEADKHAATTEIAARDG--RV 299

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAARG
Sbjct: 300 IMFLDTKHAVDRLTRNLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARG 359

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           I + DL+LV++ +  ++ ++ LHR+GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 360 IHVDDLDLVVNVDPPTDHKDYLHRAGRTARAGESGSVVTLVTPNQRRGMIRLMSDAGI 417


>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 423

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 184/336 (54%), Gaps = 5/336 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   T VQ   +   L +KDV  +AQTG+GKT AF L +    L +  +   +
Sbjct: 14  DAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPI----LQKMRKHVES 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTREL++Q+  ++        +   + +GG  + ++R  L+ G  IV+ TP
Sbjct: 70  KGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREALKKGTEIVIATP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +HI   GL++  ++  VLDEAD MLD+GF  DI  I    PK+ + L+FSAT S  
Sbjct: 130 GRLLEHIEN-GLSLKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRHQTLLFSATFSDK 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L+K        +  A +N     I+  A LV    +   +  ++        +VF  
Sbjct: 189 VRKLSKLILTKPAFIETAKKNTTVDTINQVAYLVDTVRKAELLAYLIGSRNFPQVLVFTR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S    ++ L +   +   + G+ ++  R   L   ++G+ RV +ATD+A+RG+D+ +
Sbjct: 249 TKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRVLVATDIASRGLDIEE 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  VI+ EL S PE+ +HR GRTGRAGR+G ++ +I
Sbjct: 309 LPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLI 344


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  ++       S       L
Sbjct: 47  GFERPSAIQQRAIKPMIKGRDVIAQAQSGTGKTATFSIAMLQSI------DSQLRDTQVL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G HIV GTPGR+ D 
Sbjct: 101 CLSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDLRKLDFGQHIVSGTPGRVFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR K L   ++K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 161 IRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPPATQVILISATLPHEILEMTN 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FCST+  V
Sbjct: 221 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G+ RV I TD+ ARGID+  + LVI
Sbjct: 281 DWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRVLITTDIWARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 341 NYDLPNNRELYIHRIGRSGRFGRKGVAI 368


>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 769

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 184/342 (53%), Gaps = 1/342 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T +Q   +   +   D+L  AQTG+GKT AF L L   L    D   P 
Sbjct: 15  KALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPLLHHLCKLPDMPGPG 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L IAPTRELA Q+            + V    GGV + ++ RDL  GA ++V TP
Sbjct: 75  AV-RCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQMRDLHRGADVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    +++S+++ +VLDEAD+MLDLGF   +  I  + PK+R+ L FSAT+   
Sbjct: 134 GRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPKERQTLFFSATMPSN 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           ++ LA  +  +  +V+IA E+     +      V  + +   ++  L+      A+VF  
Sbjct: 194 VSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVNLQDESIDRALVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L     +  A+ G  SQ +R  AL   R+G ++V +ATD+AARGID+P 
Sbjct: 254 TKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVLVATDIAARGIDVPG 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  V + E+ + PE  +HR GRT RAGR+G ++  + ++ ++
Sbjct: 314 VSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKK 355


>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1043

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 192/361 (53%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I E L  +G +    +Q+A +   L  +DVL   QTGSGKT+AFG+ + + L A  
Sbjct: 621 VPQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITRLAASG 680

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL +APTRELA QV   L  L    G+   +  GG+S   + R L+ G  
Sbjct: 681 --TGHGRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALERGVD 738

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I      +  ++ VVLDEADEM D+GF  D+  ILD   ++ + L+FS
Sbjct: 739 IVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEISREAQHLLFS 798

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + T+ + Y  D V   + S   + S    R  L  ++ RD A +     +    
Sbjct: 799 ATLDRQVDTIVRRYMHDPVEHGVDSA--KASVTTMRHELWTVNARDKAAIIAQAANRPGR 856

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L +      AL G L Q  R+  L   R GR  V +ATDVAAR
Sbjct: 857 TLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPVLVATDVAAR 916

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANV 365
           GID+ D+ LV+ A+   + ++ LHR+GRT RAG  G+ +  V+P+   R A R+ R+A V
Sbjct: 917 GIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLVLPRARGRMA-RIMRDAGV 975

Query: 366 S 366
           +
Sbjct: 976 N 976


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 195/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     +   T +Q   + P L+  D++  AQTGSGKT AF + + + L  + 
Sbjct: 94  VPELI-EACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 152

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L +  GV  A  +GG+++  + RDL    H
Sbjct: 153 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPH 206

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   +G ++  LK +V+DEAD +LD+ F   ++ IL   P + R   +
Sbjct: 207 IIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTYL 266

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ ++     
Sbjct: 267 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYLMNEFIG 326

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T+A+  R T +     F   AL G+L+Q +R+ +L + + GR  + +ATDVA
Sbjct: 327 KTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSILVATDVA 386

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 387 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 432


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/329 (36%), Positives = 183/329 (55%), Gaps = 7/329 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +  R      
Sbjct: 27  LKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKRFRIQ---- 82

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L      + V    GGV +  +   L++GAHI+VGTPG
Sbjct: 83  --CLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L++ ++  +VLDEAD ML++GF+ ++E I+D  P +R+ L+FSAT    I
Sbjct: 141 RIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTLLFSATFPEQI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++A       V V +AS +   +   +   +   +DR  A+  +L  +  ++A+VFC+T
Sbjct: 201 QSIADKIMFKPVLVKVASTHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L    F VVAL G+L Q++R   L    +    + +ATDVAARG+D+  L
Sbjct: 261 KRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           + VI+  ++ + E  +HR GRTGRAG KG
Sbjct: 321 DAVINYHVAYDTEVHIHRIGRTGRAGSKG 349


>gi|321249945|ref|XP_003191631.1| pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus gattii
           WM276]
 gi|317458098|gb|ADV19844.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           gattii WM276]
          Length = 737

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 189/367 (51%), Gaps = 31/367 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           IP  I + + E GY   + +Q   +   ++ +D++  A+TGSGKT AF + +   +    
Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L +++R      P AL +APTRELA Q+  E        G      +GG SV  ++  L
Sbjct: 382 PLNDDNRHL---GPYALILAPTRELAQQIEAETRKFAIPLGYKCVSIVGGRSVEEQQFAL 438

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           ++GA I++ TPGRL D +    L +S  + VV+DEAD M+DLGF  D+ FILDS P    
Sbjct: 439 RDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFV 498

Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R   +FSAT+ PA+  LA+ Y      V I +       ++
Sbjct: 499 KPDDAVALQPTTEGDWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVE 558

Query: 221 YRAVLVALSDRDNA-IVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            R   V   ++  A ++ ILR  G     IVF + + +     K + +     V L    
Sbjct: 559 QRVEFVHGDEKKKARLIEILRTIGLPPPMIVFVNQKKTADMVVKYVQQAGMSGVTLHSGK 618

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  ALQ +RDG   V +ATD+A RGID+PD+ LVI+ ++S   E  +HR GRTGRA
Sbjct: 619 SQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRA 678

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 679 GKTGVAI 685


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/363 (33%), Positives = 191/363 (52%), Gaps = 9/363 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+  P +A  AL
Sbjct: 106 GMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKRRPKTA-RAL 164

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++ TPGRL D 
Sbjct: 165 ILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLIATPGRLTDL 224

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+   I +LA+
Sbjct: 225 MRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATMPKEIASLAE 284

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +D VRV +A +    S+I      V   ++   +  +L     ++ IVF  T+    
Sbjct: 285 RLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIVFTRTKHGAD 344

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID+P    V++
Sbjct: 345 AVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGIDVPGSSHVVN 404

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV----IPQNMQRRAERLFRE----ANVSVVWE 370
            +    PE  +HR GRTGR G  G S+ +      ++  R  ER+ R      +  V   
Sbjct: 405 YDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLSIKDAPVKLA 464

Query: 371 PAP 373
           PAP
Sbjct: 465 PAP 467


>gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
 gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
          Length = 436

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 190/347 (54%), Gaps = 16/347 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G++  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q+G  I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK 
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I    +    +D   A++  L
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQ-EELFYPSNDHKMALLQTL 250

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + 
Sbjct: 251 VEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 453

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/333 (36%), Positives = 180/333 (54%), Gaps = 1/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +QE  +   L+  DVL  AQTG+GKT +F L L   L     R  P 
Sbjct: 16  KALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFKKRAMPK 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S  + L + PTRELAVQVG+  +       +  A+  GGV +  + + +  G  ++V TP
Sbjct: 76  SCRI-LVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVDVLVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    + +  ++A+VLDEAD MLD+GF   I  I+   PK+R+ ++FSAT+  +
Sbjct: 135 GRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQTVLFSATMPDS 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +     VRV +   +     ID + + V    +   + +IL       A+VF  
Sbjct: 195 IVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILGGADVVRALVFTR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  ++L +      A+ G  SQ  R  AL   RDG+ +  +ATD+AARGID+  
Sbjct: 255 TKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALVATDIAARGIDVDG 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ EL + PE+ +HR GRT RAG  G+++
Sbjct: 315 ITHVINFELPNEPESYVHRIGRTARAGASGIAL 347


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 193/365 (52%), Gaps = 8/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + +   G+   TS+Q       L  +DV+  A+TGSGKT+A+ L     + A+
Sbjct: 61  SFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPSIVHINAQ 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELA+Q+  E     + + +      GGV    + RDL+ G 
Sbjct: 121 -PLLKPGDGPIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQMRDLERGI 179

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 180 EICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 239

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR---Y 241
           SAT    +  LA++YQK+ ++VN+ S     S    + V +  S D+ + +  +L     
Sbjct: 240 SATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYKLLEDIMS 299

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  I+F  T+ +    T+ L    F  +A+ G+  QQER   +Q  + G+  + IAT
Sbjct: 300 NADQKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGKTPILIAT 359

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAER 358
           DVAARG+D+ D++ VI+ +  +N E+ +HR GRTGRA  KG +  +  P N +  R   +
Sbjct: 360 DVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSPDNFKSARDLVK 419

Query: 359 LFREA 363
           +  EA
Sbjct: 420 ILEEA 424


>gi|325964952|ref|YP_004242858.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471039|gb|ADX74724.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 633

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 190/365 (52%), Gaps = 4/365 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-EN 66
           P+ + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF + L + L   E 
Sbjct: 10  PKALADTLTAQGIETPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPLVARLAEREA 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+ + L+ G  
Sbjct: 70  PYFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQEKALRAGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P + + L+FS
Sbjct: 130 IVIACPGRLEDLIRQRILTLEAVEITVLDEADHMADLGFLPVVKKLMDMTPSQGQRLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+   +  + + Y  + +  ++       + +++  ++V   + +   IV +    GA 
Sbjct: 190 ATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIVEL--ASGAG 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K L +     V L G LSQ  R   L    +G  RV +ATDVAA
Sbjct: 248 RRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   ++L + A V
Sbjct: 308 RGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTITLPEQQTDVKKLMKAAGV 367

Query: 366 SVVWE 370
            V +E
Sbjct: 368 DVSFE 372


>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 558

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/351 (35%), Positives = 187/351 (53%), Gaps = 16/351 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+E G  +  ++QE  L   L  KD++  A+TG GKT+A+G+ L   +  +     
Sbjct: 103 IVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLDRIFDDAAIPE 162

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLY---------AKTGVVVAVCIGGVSVHRERRDL 121
               P AL +APTRELA QV  +L              ++  V  +C GG    ++   L
Sbjct: 163 LDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTIC-GGHPFEKQIAQL 221

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G   +VGTPGRL D  + + LN+SH+  +VLDEADEMLDLGF  DIE IL   P+KR+
Sbjct: 222 REGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKILQQVPEKRQ 281

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVN 237
            ++FSAT+   I  LA+ +      V+I +E    S        VA  +        +  
Sbjct: 282 TILFSATMPAPIMALARTFMNKP--VHIRAEGTDDSTTHTTTKQVAFKNHKLNKLATLSA 339

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+ H     I+F  T+ S +     LA+  F V A+ G+++Q  R  +L   R  +  +
Sbjct: 340 ILQAHNRGRTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAFRSKKIEI 399

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG  G +V ++
Sbjct: 400 LVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLV 450


>gi|188574399|ref|YP_001911328.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518851|gb|ACD56796.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 405

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 16/370 (4%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA-- 79
            LT +Q A++ P L  +D++V+AQTGSGKT+A+ L L    L      +P   P  L   
Sbjct: 3   TLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQ-----APEQVPRVLGGL 57

Query: 80  -IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTREL  QV + L  L A     + +    GG +++ +   L+ GA IV+ TPGRL 
Sbjct: 58  ILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGADIVIATPGRLL 117

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +    L +S ++ +VLDEAD +LDLGF  +I+ IL   P +R+ ++ SAT  PAI +L
Sbjct: 118 DLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVLVSATFPPAIASL 177

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           AK   +D +R+ I +       I  RA+ V    R   + ++L+ H     +VF ++R +
Sbjct: 178 AKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQEHAWPQLLVFVASRHT 237

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +  + L++   + + L GELSQ  R   L+  +    +V +ATD+AARGID+  L  V
Sbjct: 238 ADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLAARGIDIDALPAV 297

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR-----RAERLFREANVSVVWE 370
           ++ +L  +  +  HR GRT RAG  G ++ FV  +  Q+     + + L    +V   +E
Sbjct: 298 LNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEKRQGLRVPTSVIEGFE 357

Query: 371 PAPSVEAIRE 380
           P+P+  + R+
Sbjct: 358 PSPAEASARD 367


>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
           RNA-dependent helicase p72; DEAD box protein p72
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 454

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 453

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 455

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 186/355 (52%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +    L   
Sbjct: 231 FPQPILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 290

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVC---IGGVSVHRER 118
            R  + P   P  L + P+RELA Q      +   K    G     C   IGG SV  + 
Sbjct: 291 TRAAYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEEGGYPALRCLCVIGGCSVVEQA 350

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+++ G H +V TPGRL D +  + L++   + +  DEAD M+D+GF +++  +LDS   
Sbjct: 351 REVRQGVHCIVATPGRLTDMLNKRRLSLQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 410

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   ++   +++ 
Sbjct: 411 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 470

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   A   ++FC  +  V    + L        A+ G L+Q+ERS+A++  R+GR  V 
Sbjct: 471 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAFREGRKDVL 529

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +N +
Sbjct: 530 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 584


>gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 442

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 195/376 (51%), Gaps = 23/376 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+   +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L    +   A
Sbjct: 14  KTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPMLHKAL--KTKALSA 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  + + PTRELA QV  EL    A       +  GG + + +   L+ G   +V TP
Sbjct: 72  RDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVNALRRGPKFIVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISP 191
           GRL DH+  + L +  L  ++LDEAD MLDLGF   +  I +++  +RR  LMFSAT+  
Sbjct: 132 GRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHRRRQTLMFSATLDH 191

Query: 192 A-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
           A + T+A    K+  R+ I   N QH DI  R  L    D   A+++ IL     +  I+
Sbjct: 192 AEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLCDHLDHKEALLDRILNDAEYRQVII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R T  L E   +VVALSG L+Q +R+  +        ++ + TD+A+RG+D
Sbjct: 252 FTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFKILVTTDIASRGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           + ++  VI+ ++  + E  +HR GRTGRAG +G ++ ++ P++                 
Sbjct: 312 IANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKD----------------- 354

Query: 369 WEPAPSVEAIRERDAQ 384
           W+    VEA  ++D Q
Sbjct: 355 WDSFKRVEAFLQQDIQ 370


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 179/337 (53%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  A+ + GYV  +++Q+  + P L   DVL  AQTG+GKT AF + +   L  +   
Sbjct: 28  QPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQRLDTQCAS 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA+Q+    +       +   V  GGV    +  +L+ G  I+
Sbjct: 88  IKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQVDELRRGVDIL 147

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    +++S +   VLDEAD MLD+GF  D+E +++  P KR+ L FSAT
Sbjct: 148 VATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPNKRQTLFFSAT 207

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  L      D V+V +   +     I+ R   V   ++   ++ +L      +A+
Sbjct: 208 MPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYLLEDVSIVSAL 267

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +   +  A+ G+ SQ  R  AL   ++G  RV +ATD+AARGI
Sbjct: 268 VFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIRVLVATDIAARGI 327

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ +L  V + +L + PE  +HR GRTGRAG  G+++
Sbjct: 328 DIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAI 364


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+ +        
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
          Length = 445

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 8/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA  E GY   T +QE  +   L  +D++  A+TGSGKT AF L +   L+ +  +F 
Sbjct: 39  LCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFH 98

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L +APTRELA Q+   +E L A+  V   + IGG+ +  +   L    H++V 
Sbjct: 99  ------SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVA 152

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  LK +VLDEAD +LDL F   ++ +L   PK R+  +FSAT+
Sbjct: 153 TPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPK-RKTYLFSATM 211

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  + +L +    D VRV+++++N+  S +    + +    +D  +V +L     +  I+
Sbjct: 212 SSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGII 271

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T     R + +L    F  + + G+LSQ  R  +L   R     + IATDVAARG+D
Sbjct: 272 FTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLD 331

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P ++ V++ +L  + +  +HR GRT RAG+ G++   + Q
Sbjct: 332 IPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQ 372


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      FS 
Sbjct: 222 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGAAASCFSE 281

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + RDL  G +++ GT
Sbjct: 282 MQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGHQIRDLLRGCNVLCGT 341

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ ++ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 342 PGRLLDMIGRGK-VGLTKVRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 400

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K D + + +       SD++   V V    +   ++++L+  G++
Sbjct: 401 ATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFAKREQLIDLLKSTGSE 460

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+        +L +  F   ++ G+  Q +R  AL   R G+  V +AT V A
Sbjct: 461 RTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDFRSGKCSVLVATSVGA 520

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 521 RGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 560


>gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 194/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY + T +Q+  +   L+ +D++ SAQTG+GKT  F L L   LL +N +     
Sbjct: 15  AVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKNGKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   +   V +A  N     +     LV    +   +  ++     +  +VF  
Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 374 EGYEPDPTIKA 384


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  R  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA ++V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|238878470|gb|EEQ42108.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 581

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 30/369 (8%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70
           +S+ GY   TSVQ A +   L+++DV+  A+TGSGKT+AF + + + +L+ ++ +     
Sbjct: 183 ISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 242

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
            ++ P+ L +APTRELA+Q+ +E E    K G  V   IGG         + Q G H++V
Sbjct: 243 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIV 302

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177
            TPGRL D I  K +++S    +V+DEAD M+D+GF  D+  +LD  P            
Sbjct: 303 ATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGR 362

Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALS 229
               +KR  +MF+ATISP +  L K Y  D   + I        +I    ++ +     +
Sbjct: 363 IFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEA 422

Query: 230 DRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            + N ++ I+R H    +N   I+F + +      ++ L+ +    V + G  SQ  R  
Sbjct: 423 TKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQ 482

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS- 344
           A+   R+  + V IATDVAARGID+P++ LVI+ ++    +  +HR GRTGRAG  G S 
Sbjct: 483 AITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESF 542

Query: 345 VFVIPQNMQ 353
            F+  Q+ +
Sbjct: 543 TFISDQDTE 551


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   P+   E 
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQKFYNVLIEELPSNVAEL 412

Query: 378 I 378
           +
Sbjct: 413 L 413


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 179/337 (53%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +AL+E  +   T +Q   +   L  +D++  AQTG+GKT AF L +   L+ +  R
Sbjct: 16  EPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILHHLVTKRLR 75

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               SA  AL ++PTREL+ Q+               A+ IGGV + R+ R L  G  ++
Sbjct: 76  PERRSA-RALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLAGGVDVL 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    + +  ++  VLDEAD+MLD+GF   I  I+   P KRR L FSAT
Sbjct: 135 VATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRRNLFFSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA     D VRV +    +    I+ +      + + N +V +L       A+
Sbjct: 195 MPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNLLVEVLGEPTLDRAL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  K LA       A+ G  SQ +R  AL   R G  +V +ATD+AARGI
Sbjct: 255 VFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAARGI 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P +  VI+ +L + PE+ +HR GRT RAGR+G+++
Sbjct: 315 DVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAI 351


>gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
 gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
          Length = 452

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY + T +Q+  +   L+ +D++ SAQTG+GKT  F L L   LL +N +     
Sbjct: 15  AVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQ-LLHQNPKNGKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 74  RPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   +   V +A  N     +     LV    +   +  ++     +  +VF  
Sbjct: 194 IKALAASLLHNPAEVEVARRNTASELVSQHVHLVDKKRKRELLSFLIGSQDWRQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 254 TKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRPIPRMAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 AGYEPDPSIKA 384


>gi|300932825|ref|ZP_07148081.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 420

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/367 (35%), Positives = 197/367 (53%), Gaps = 8/367 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+ R   +  ++QE  L   L  KD++  A+TG GKT  FG+ L   +  +     
Sbjct: 18  ICDGLATRDITHAFAIQELCLPLALAGKDLIGQARTGMGKTYGFGIPLLDRVFDDAHVTP 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG-AHI 127
           P  +P AL I PTREL +QV  +L  + A+    + V    GGV    + + LQ G + +
Sbjct: 78  PDGSPRALVIVPTRELCIQVADDLT-IAAQFLPEINVLALYGGVKFETQIQQLQQGHSDV 136

Query: 128 VVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VGTPGRL D H RG+ L + +++ VVLDEADEMLD GF DD++ ++  + + R+M++FS
Sbjct: 137 LVGTPGRLLDLHRRGE-LVLENVEIVVLDEADEMLDQGFLDDVQALIAETSENRQMMLFS 195

Query: 187 ATISPAITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   I  L++ + +  V  R + A   + H+     A      DR +A+  IL+  G 
Sbjct: 196 ATMPGPIMALSRTFMRHPVQIRADQAQSQQTHATTTQLAFQSHKLDRMSALARILQTPGR 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +     L E  F   A+ G++ Q ER   L+  R+G   V +ATDVA
Sbjct: 256 GRTMVFTRTKKQAAFVASDLGELGFAAGAVHGDMRQHERQQCLEAFREGTVDVLVATDVA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+  VI+ +   +    +HR GRTGRAG  GM+V ++  +   R   L    N
Sbjct: 316 ARGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGMAVTLVGWDEVDRFNALCETLN 375

Query: 365 VSVVWEP 371
           + +   P
Sbjct: 376 LDLSNPP 382


>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
 gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 191/371 (51%), Gaps = 12/371 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E+L + GY + + VQE ++   L+ KD++V +QTGSGKT AF + +   +  E     
Sbjct: 15  ILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIPICEKIEIEEKN-- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA+Q+  +  ++     +      G   +  + + L+   H+V G
Sbjct: 73  ----PQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKKLKQRVHVVTG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    L +  +K +V+DEADEML  GF + +E ++ S PK R  L+FSATI 
Sbjct: 129 TPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNRTTLLFSATIP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L   Y ++ + + +  E+     I      +    + + +  I+      ++++F
Sbjct: 189 DEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPYKFSLLNKIIYTERPDSSMIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +V      +    +   AL G + Q ER + ++  + G     I TD+AARGID+
Sbjct: 249 CRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLICTDIAARGIDV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSV 367
            ++  +I+ ++    EN +HR GRTGR    G ++ FV P+     ++ E  F   ++++
Sbjct: 309 ENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKIEEYF---HITI 365

Query: 368 VWEPAPSVEAI 378
                PS+E +
Sbjct: 366 KEGSIPSLEEV 376


>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 407

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 189/341 (55%), Gaps = 6/341 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I + L   G+   T +Q   ++P L  +DV   AQTG+GKT AF + +   L    
Sbjct: 8   ISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPIIHKLSTSR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   + +P  + +APTRELA Q+    E +   + + +   +GG+   ++ ++L+ G  
Sbjct: 68  PK---SKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQELKRGTD 124

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGR+ D +R +G L++  ++ +VLDEAD MLDLGF  D++ I   SP++ R  MF
Sbjct: 125 VIVATPGRVFD-LRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNRQTMF 183

Query: 186 -SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SATI   I  LA +  +DA+R+ I+ ++    ++++ A+ V + D+   + NI++ +  
Sbjct: 184 FSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHGAITVEMDDKRFFLENIIKEYEE 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    R    +        AL G + Q++R   L+  + G  ++ I TDVA
Sbjct: 244 FKYVVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKILITTDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  ++ VI+ +L   PE  +HR GRTGR   KG ++
Sbjct: 304 ARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQAL 344


>gi|172040746|ref|YP_001800460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
 gi|171852050|emb|CAQ05026.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
          Length = 430

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 197/397 (49%), Gaps = 39/397 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + ++L   G      +Q +++   +  KDVL SA TGSGKT+AFGL + + L + 
Sbjct: 19  GLPLALAQSLQRAGLREAFPIQASVIPSAVEGKDVLASAPTGSGKTLAFGLPMLARLSSG 78

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  R +    P  + + PTRELA QV   L+   A  G+   V +GGV V      L   
Sbjct: 79  DLPRATRPGNPRGVVLCPTRELAEQVFENLDPHAAALGLRALVLVGGVKVRANLTSLART 138

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D I  + +++ H    V+DEAD M DLGF   ++ IL+ +P+  + L+
Sbjct: 139 VDIVVATPGRLNDLIERRAISLEHCAVTVVDEADHMADLGFLPQVQAILERTPRGSQRLL 198

Query: 185 FSATISPAITTLAKNYQKDAVRVN--------------IASENRQHSDIDYRA------- 223
           FSAT+   +  LA+ +  + VR+                 +  R  ++++ R        
Sbjct: 199 FSATLDGEVAALAEGWTHNPVRIEAEGTHSGATSAPGPTTASVRHQAEVNARPTGPRPTP 258

Query: 224 ------------VLVALSD---RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
                       +L  ++D   R  A+  I R       I F  T  +V+R+ K L+   
Sbjct: 259 RATEDLASPVEFLLSEVADNGQRQAAVRAIARK--VPRVIFFVRTTHAVTRWAKYLSAGG 316

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            +V AL G    Q R  AL   R+G+ RV +ATD+AARGID+P ++ V+H +   +P+ L
Sbjct: 317 IKVSALHGNRGHQSRQRALADFREGKVRVLVATDIAARGIDVPGVQAVVHIDPPRDPKAL 376

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           +HRSGRTGRAG  G    +   +  R    + R AN+
Sbjct: 377 VHRSGRTGRAGASGTVALLAFPDQVREVSTMMRAANL 413


>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 453

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 415

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 192/356 (53%), Gaps = 9/356 (2%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +QE  +   L+  D+L  AQTGSGKT+AF L + + +L   D+  P +A  AL + PTRE
Sbjct: 33  IQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILTLGDKRYPKTAR-ALILVPTRE 91

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA+Q+   +  +   T +   + +GG+S   + R +  G  I++ T GRL D IR K ++
Sbjct: 92  LAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMAKGVDILIATTGRLMDLIRSKYVD 151

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +S  +  +LDEAD MLD+GF +D+  I     +K +  +FSAT+S  +  LA N  +  V
Sbjct: 152 LSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQTALFSATMSKEVNVLADNLLRKPV 211

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
           ++ + S+    ++I      V+ S++ + +  +L      + IVF  T+       + L 
Sbjct: 212 KIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARSLT 271

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +  + V  + G  SQ  R  AL+  R+G  RV +ATD+AARGID+P +  VI+ +L  N 
Sbjct: 272 KAGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPDNA 331

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR----EANVSVVWEPAP 373
           E+ +HR GRTGR G  G ++    + +++      ERL R       + + + P P
Sbjct: 332 ESYVHRIGRTGRNGASGDAITFFDEKIEQVRLCAIERLIRMKLKRKEIPLQFAPLP 387


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/338 (36%), Positives = 182/338 (53%), Gaps = 4/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
            AL +      T VQ   L   L  +D++ SAQTG+GKT AF L   S LL E    + +
Sbjct: 17  HALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSRLLVEP--VARS 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L +APTREL  QV +  +    K   V VA  IGG S   + + L     ++V T
Sbjct: 75  RGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLTRPIEVMVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +R   ++ S L+ +VLDEAD MLD+GF +D+  I    PK R+   F+AT++ 
Sbjct: 135 PGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQTAFFTATMTR 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +   A     +  ++ IA++  +H +I+ +A+ V   D    +V +IL     K AIVF
Sbjct: 195 RVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILSQPDVKQAIVF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+         L     +  AL G++ Q++R+  L  +R G+  V +ATDVAARGID+
Sbjct: 255 VATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDVAARGIDV 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ +L    E+ +HR GRTGRAG  G +V ++
Sbjct: 315 AGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLV 352


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 191/354 (53%), Gaps = 10/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           ++     E + +  Y   T +Q+  +   L ++D++  AQTGSGKT AF L + ST+L  
Sbjct: 83  DVEDCFKENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLSTMLRN 142

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E   +S    P A+ + PTREL  Q+  E       T V   V  GGV    + R+++
Sbjct: 143 GIEGSSYSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIE 202

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPK 178
            GAH++VGTPGRL D I RGK +++  +K ++LDEAD MLDLGF+DDI+ +++     PK
Sbjct: 203 KGAHMIVGTPGRLLDFIGRGK-ISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPK 261

Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ LMFSAT    + +LA+    D + V +      ++DI+     V   D+   +++
Sbjct: 262 QERQTLMFSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLID 321

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     +  +VF   + +       L++      ++ G+  Q+ER  AL   + GR  +
Sbjct: 322 LLNACPNERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPI 381

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQ 350
            +AT VAARG+D+P +  V++ ++    +  +HR GRTGR G  G  + F  P+
Sbjct: 382 LVATSVAARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTFFNPE 435


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  + + +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 209 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 268

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G ++V GT
Sbjct: 269 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 328

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 329 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 387

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   ++++L+  G++
Sbjct: 388 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGSE 447

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 448 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 507

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 508 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 547


>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei TREU927]
 gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 632

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/460 (31%), Positives = 232/460 (50%), Gaps = 40/460 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL  +G V+L  VQ       +R +DVLV A+TGSGKT+AFG+ +   L  +
Sbjct: 51  NLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEKLNKK 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+   PTRELA+QV   L  +     +VVA   GGV+   + R L +G 
Sbjct: 111 EGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGD--LVVAALYGGVAYSTQERVLFSGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-------SSPK 178
            IVV TPGR  D +    L+   +K V LDEAD MLD+GF++DIE +L        S+P 
Sbjct: 169 DIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSTPD 228

Query: 179 --KRRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             K + L+FSAT+   + T   ++KN  K  + +      R  + I +       ++  +
Sbjct: 229 EPKHQTLLFSATVPDWVHTCSFISKN--KKFIDMVGQGAMRAANTIRFYRRKCGFAEVSS 286

Query: 234 AIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + ++++ +  ++   ++F +T+      +  +         L G++ Q++R + ++  R
Sbjct: 287 MLADLVKVYSGRHGRTLIFTNTKKDCHDLS--INNTKLDSQCLHGDMQQEQRESTMKSFR 344

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V +    
Sbjct: 345 DNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPK 404

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD---------PLFLDSIQGDEKK 402
            +   ER+ R A +     PAP+ E I +  A+   +D          LF+D  Q  E  
Sbjct: 405 DEYVVERIERHAKIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMD--QAAE-- 460

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSG 442
               LL   DP +I A  + +          IT   L+SG
Sbjct: 461 ----LLKDADPTEILASAIAVMSG---YTSSITKRGLISG 493


>gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
          Length = 406

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 192/373 (51%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+    + + + +A  N     +      V    +   + +++     +  +VF
Sbjct: 192 DDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
            +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +
Sbjct: 312 EELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371

Query: 368 V---WEPAPSVEA 377
               +EP PS++A
Sbjct: 372 AIPGYEPDPSIKA 384


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   + +QE  +   L  KD++ +AQTG+GKT  F L +   L     + +
Sbjct: 12  ILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQLL--SKGKPT 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++    L + PTRELA QV   +        +   V  GGV ++ + + L+ G  I+V 
Sbjct: 70  NSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKLRGGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +V DEAD MLD+GF  DI+ IL   P KR+ LMFSAT S
Sbjct: 130 TPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQTLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK+   + V V+    N     +      V  S +   +  +++ H     +VF
Sbjct: 190 DEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKLIKDHSWYQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L +      A+ G  SQ  R+ AL   +DG+  V +ATD+AARGID+
Sbjct: 250 SRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L  V++ +L   PE+ +HR GRTGRAG KG ++ ++
Sbjct: 310 IELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLV 347


>gi|290955325|ref|YP_003486507.1| DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
 gi|260644851|emb|CBG67937.1| putative DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
          Length = 459

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 204/379 (53%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   +++ G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL   L+  
Sbjct: 33  GLPPALLRTMTDLGVTEPFPIQAATLPHALAGRDVLGRARTGSGKTLAFGLAL---LVRT 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +  PLAL + PTRELA QV   L       GV +   +GG+S+++++  L+ GA
Sbjct: 90  AGRRAESKRPLALVLVPTRELAQQVTDALTPYAETLGVRLTTVVGGLSINKQQAALRAGA 149

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +  +   ++ ++  VLDEAD+M DLGF   +  IL+  P   + L+F
Sbjct: 150 EVLVATPGRLADLVSRRDCVLNQVRITVLDEADQMCDLGFLPQVSEILEQVPADGQRLLF 209

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L +++  D V  ++       + +++  + +  +D+      I    G  
Sbjct: 210 SATLDRDVDQLVRDHLHDPVPASVDRVAGSVTTMEHHVLNIHGADKYATATEIAARDG-- 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+A V +FT+ L     +  AL    SQ +R++ L   +DG   V +AT+VAA
Sbjct: 268 RVLMFLDTKAGVDQFTRHLRASGVRAGALHSGKSQPQRTHTLGQFKDGLITVLVATNVAA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+  +A +
Sbjct: 328 RGIHIEALDLVVNVDPPADAKDYLHRGGRTARAGESGKVVTLVTPNQRRDVNRMMSDAGI 387

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  +AQ
Sbjct: 388 R------PTVTQVRSGEAQ 400


>gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Hydra magnipapillata]
          Length = 594

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 192/349 (55%), Gaps = 28/349 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDL----REK-----DVLVSAQTGSGKTVAFGLALASTLL 63
           +A  + GY   T+VQ+  +   +     EK     D++VS+QTGSGKT AF L +  TLL
Sbjct: 55  QACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTAAFLLPVLHTLL 114

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +      A  P AL + PTRELA QV  + ++ +    G+ VA  +GG+    +   LQ
Sbjct: 115 FK------APTPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQ 168

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           N A++VV TPGRL D  R   + +  ++ +V+DEAD MLDLGF DD+  I   +  +++ 
Sbjct: 169 N-ANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQT 227

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IV 236
           +MFSAT +P I  LA    ++  RV I S   +H++I  + VL      DNA      + 
Sbjct: 228 MMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANI--KQVLFWA---DNAQHKRKLLD 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + LR      A+VF ST+         L +  F  VAL G LSQ  R+  L  +R G+ +
Sbjct: 283 HWLRDTTINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQ 342

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARGID+P +  V +  L    E+  HR GRTGRAGR G++V
Sbjct: 343 ILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAV 391


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 190/364 (52%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTTPQPVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii]
 gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=DEAD box protein 23
 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii]
          Length = 820

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 192/372 (51%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L  S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 756

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 757 RAGKSGVAITFL 768


>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
 gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
          Length = 433

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 182/335 (54%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   T +Q   +   L  +D+L +AQTG+GKT  F L +   L+ EN R  
Sbjct: 12  ILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIIQHLITEN-RPV 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+    L + PTRELA QV   +      T V   V  GGV ++ + + L+ G  I+V 
Sbjct: 71  KANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQKLRRGVDILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      ++   L+ +VLDEAD MLD+GF  DI  I+   P +R+ LMFSAT S
Sbjct: 131 TPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQRQNLMFSATFS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   ++ V V++  +N     +  + + V  + +   ++++L+       +VF
Sbjct: 191 DEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKTALLIDLLKKETWHQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +ATD+AARGID+
Sbjct: 251 SRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVLVATDIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ +L +  E+ +HR GRTGRAG  G ++
Sbjct: 311 DQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAI 345


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 192/347 (55%), Gaps = 11/347 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +QE  +   L  KD++  AQTG+GKT AF L + + ++   +    A+    L 
Sbjct: 21  YKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVLNEIIESGE----ANFIQTLV 76

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVVGTPGRLC 136
           I PTRELAVQ+ + +E     TGV      GG       +E+  L +G  IV+ TPGRL 
Sbjct: 77  IVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQEKNALVSGVDIVIATPGRLI 136

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
            H+    +N S L+ +VLDEAD M+D+GF+ D+  I+   P+KR+ L+FSAT+  ++  L
Sbjct: 137 SHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKIPQKRQTLLFSATMPESVMKL 196

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+    +A  V+IA  ++    +  RA +V    +   +  +L+    +  +VFCS++AS
Sbjct: 197 ARQLTHNAESVSIAL-SKPAEGVTQRAYVVYEEQKLQLVTELLKDRKGQRIVVFCSSKAS 255

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           VS     L      V  +S ++ Q +R   +   R+ +  + +ATDV +RGID+  ++LV
Sbjct: 256 VSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKIDIIVATDVISRGIDVDGIDLV 315

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           ++ ++  +PE+ +HR GRT RA RKG ++ ++    Q   RR E+L 
Sbjct: 316 VNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLRFRRIEKLI 362


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 205/369 (55%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   + + +
Sbjct: 29  ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV   +         + +V  +GG     + R L+ G  +++
Sbjct: 86  IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT 
Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI 248
             A+  +A+ +  +  +V+I  E+   + ID         + ++N ++ +L     K A+
Sbjct: 206 DGAVGKIAERFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAARGI
Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAARGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364
           D+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E     L R+ +
Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382

Query: 365 VSVVWEPAP 373
           VS +    P
Sbjct: 383 VSTIEGLEP 391


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/348 (36%), Positives = 185/348 (53%), Gaps = 20/348 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+V    ++  GYV+ T +Q   +   L   D++  AQTG+GKT AF L +  
Sbjct: 3   FKTFNFHPRVAAGVVAA-GYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+A+  +        AL +APTRELA Q+ + +E L  +T V      GGV +H +  +
Sbjct: 62  RLMAKKSK-----GVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIEN 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++ AHIVV  PGRL DH+  K ++ S L+ +V+DEAD+M D+GF  DI  IL   PKKR
Sbjct: 117 LKH-AHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHS--DIDYRAVLVALSDRDNA 234
           + L+FSAT+ P I  L  +   +   V I +    E  +H+   + +      L      
Sbjct: 176 QTLLFSATMPPEIRRLEGDILINPSMVQIGAVAPAETVRHALYPVPHHLKTALLLKLLGD 235

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            V        K+ +VF  T+       K L    +   +L G LSQ  R  AL+  RDG 
Sbjct: 236 TV-------VKSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGT 288

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            ++ +ATD+AARGID+  +  VI+ ++ S PE  +HR GRTGRA R G
Sbjct: 289 YKILVATDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSG 336


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/336 (34%), Positives = 186/336 (55%), Gaps = 13/336 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L  KD +  AQ+G+GKT  F    A ++L + D    A+   AL
Sbjct: 50  GFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATF----AVSILQKID--VAAADCQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     + V  C+GG +V  + R LQNG HIVVGTPGR+ D 
Sbjct: 104 VLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDIRTLQNGVHIVVGTPGRVYDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  +   VLDEADEML  GF+D I  +    P++ ++ +FSAT+   +  +  
Sbjct: 164 ISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPERVQVALFSATMPLDVLEVTN 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +  + VR+ +  +      I    + V   DR+    + + ++        AI++C+TR
Sbjct: 224 RFMPEPVRILVKKDELTLEGIKQFYIAV---DREEWKLDTLCDLYETLTITQAIIYCNTR 280

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   ++ + E  F +  + G++ Q ER   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 281 RRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 340

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           LVI+ +L +N EN +HR GR+GR GRKG+++  + Q
Sbjct: 341 LVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQ 376


>gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 608

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 205/380 (53%), Gaps = 13/380 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I   L   GY   + +QE  +   L  KD++  AQTG+GKT AF L L   +       
Sbjct: 22  TILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLDKINLN---- 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHI 127
              +AP  L +APTRELA+QV   ++  YA+   G  V    GG S   + R L+ G H 
Sbjct: 78  --INAPQLLILAPTRELAIQVSEAVQT-YARGMKGFHVLPIYGGQSYDIQLRPLKRGVHA 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGR+ DHI  K L + +LK+ VLDEADEML +GF DDI++I+   P++R++ +FSA
Sbjct: 135 IVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKN 246
           T+   I  +AK +      + I ++    + I  +  +V  LS++  A+  IL       
Sbjct: 195 TMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRILEVTVFDA 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+   +  T+ L+   F   A++G++ Q +R   +   + G+  + IATD+AAR
Sbjct: 255 MIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILIATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +R    +       
Sbjct: 315 GLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTIEHVTRQK 374

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +     PSV+ I   +A+RI
Sbjct: 375 ITPIELPSVKII---NAKRI 391


>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
 gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
 gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
 gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
           2457T]
 gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           4343-70]
 gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           2747-71]
 gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
 gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Shigella flexneri 2930-71]
 gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
 gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
          Length = 406

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 192/373 (51%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+    + + + +A  N     +      V    +   + +++     +  +VF
Sbjct: 192 DDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
            +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +
Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371

Query: 368 V---WEPAPSVEA 377
               +EP PS++A
Sbjct: 372 AIPGYEPDPSIKA 384


>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 455

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 191/351 (54%), Gaps = 11/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           E + + GY   T++Q+  +   L  +D++  AQTGSGKT AF L +   LL+  D+  P 
Sbjct: 171 ENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLS--DKNPPN 228

Query: 72  ----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                + P+ + ++PTRELA+Q+  + +     + V VAV  GG S + +R  +  G HI
Sbjct: 229 TENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHI 288

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPK--KRRML 183
           +V TPGRL D +    ++ + LK  VLDEAD MLD+GF  D+E +L   S P   +R+ L
Sbjct: 289 LVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTL 348

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA  +  + + + +       +D++ +   V+  D+ + +V+IL    
Sbjct: 349 MFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDKRSKLVSILEKAP 408

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+ +       L+E   Q  ++ G+  Q ER  AL   + G  +V +AT V
Sbjct: 409 NERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGV 468

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           AARG+D+ D++ VI+ +L  + +  +HR GRTGR G KG +     ++  R
Sbjct: 469 AARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDR 519


>gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group]
          Length = 516

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 78  LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 137

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 138 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 197

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 198 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 257

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 258 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 317

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 318 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 376

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 377 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 429


>gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
 gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
          Length = 454

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|226329076|ref|ZP_03804594.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
 gi|225202262|gb|EEG84616.1| hypothetical protein PROPEN_02979 [Proteus penneri ATCC 35198]
          Length = 340

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 174/301 (57%), Gaps = 6/301 (1%)

Query: 77  ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           +L + PTRELA QV  EL  L  Y     V+ +C GGV    +R  L + AHI+V TPGR
Sbjct: 16  SLILCPTRELADQVANELRRLARYLPNIKVLTLC-GGVPFSIQRDSLIHAAHIIVATPGR 74

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH++ + + +  +K +VLDEAD MLD+GF DDI  I+   P  R+ L+FSAT    I 
Sbjct: 75  LLDHLKKETVTLDDVKTLVLDEADRMLDMGFFDDINDIISRMPTARQTLLFSATWPNEIA 134

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+++  Q++ + + I S +   + ++ +   ++   +   +  +L      + +VFC+T+
Sbjct: 135 TISRKIQQNPITIEINSVDELPA-VEQQFYEISRHGKIGLLQKLLSREQPASCVVFCNTK 193

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + L E    V+AL G++ Q+ER   L    +G  RV +ATDVAARG+D+  LE
Sbjct: 194 RDCQDVYETLTESNQSVLALHGDMEQRERDQTLIRFANGSCRVLVATDVAARGLDIKALE 253

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP 373
           +VI+ ELS +PE  +HR GRT RAG  G+++ F  P+ +Q RA  L    ++ + W P P
Sbjct: 254 MVINYELSWDPEVHVHRIGRTARAGESGLAISFCAPEEIQ-RANALEEMLHMKINWLPIP 312

Query: 374 S 374
           +
Sbjct: 313 T 313


>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 454

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 423

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 195/349 (55%), Gaps = 3/349 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +A+++ GY   T VQ+A++   L  +DVL SA+TG+GKT AF L L S L+ ++
Sbjct: 8   LPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLLSHLMNQD 67

Query: 67  DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                PA+   AL + PTRELA+Q+ + L        +      GG S++ +R+ L+ G 
Sbjct: 68  HSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQRKALEQGI 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +     ++ + +MF
Sbjct: 128 DILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIARQHQTMMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  + TLA     +   V++ ++    +++  +   V    +   +  ++  H  +
Sbjct: 188 SATFSEDVKTLAAKMLNNPEYVHVETQTTA-ANVVQQVYQVDTRRKAELLSELIGKHNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S + +     + L+    +     G+ SQ  R+ AL+  + G+ RV IATD+AA
Sbjct: 247 QVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQLRVLIATDLAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RG+D+  L  VI+ EL    E+ +HR GRTGRAG  G ++  V PQ ++
Sbjct: 307 RGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELE 355


>gi|260905466|ref|ZP_05913788.1| putative DEAD-box RNA helicase [Brevibacterium linens BL2]
          Length = 598

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+V+ E+L   G +N   +Q+  L   L  +DVL   +TGSGKT+AF + + + L A  
Sbjct: 39  VPEVLTESLRAEGKINAFPIQQDTLPDTLAGRDVLGRGKTGSGKTLAFSIPMVTRLAAAK 98

Query: 67  DRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              S  S  P  L +APTRELA Q+   ++ L    G+      GGV   R+   L  G 
Sbjct: 99  SAGSKRSRPPRGLILAPTRELATQITNVVDPLAQAYGMTTTTIFGGVKQKRQEVALNAGV 158

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D ++   +++ H++  VLDEAD M DLGF   +  IL  +P+  + + F
Sbjct: 159 DIVVACPGRLEDLLQQGLVSLDHIEVTVLDEADHMADLGFLPSVTRILGKTPEHGQRMFF 218

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  + V  ++   +   SD+ +  V     D  N +V+ L   G  
Sbjct: 219 SATLDNDVNKLVRRFLHNEVLHSVDDPSSHVSDMTHH-VFEVPDDNKNELVHRL-ASGTG 276

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    RF + L       V L G LSQ  R   L    +G  +V +ATDVAA
Sbjct: 277 RRIMFTRTKHRAKRFARQLTAQGIPAVDLHGNLSQGARDRNLAAFSEGDVKVLVATDVAA 336

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ +  +ELV+H +  +  +  LHRSGRT RAG  G  V ++    +R  + L R+A +
Sbjct: 337 RGVHVDSVELVVHVDPPTEHKAYLHRSGRTARAGSSGEVVTIMLPEQRRDTQTLLRKAAI 396

Query: 366 SVVWE 370
            V  +
Sbjct: 397 KVTPQ 401


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/367 (33%), Positives = 196/367 (53%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  GY   T VQ  ++   +   D+LVSA TGSGKT AF L +    +   
Sbjct: 10  LPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIMQRFI--- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D      +  AL + PTRELA Q+      L + T +   V  GG S   +   L+    
Sbjct: 67  DVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRKNPE 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL + +     N+  L+ +VLDEAD MLD+GF DD+  I+  S  +R+ L+FS
Sbjct: 127 ILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLLFS 186

Query: 187 ATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244
           AT+    ++ + +   +D  RV++    +QH DI +  +L   L  +   ++ +LR+   
Sbjct: 187 ATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLLRHETY 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F +TR         L     +V  L GEL Q+ER+  + ++  GR    IATD+A
Sbjct: 247 EKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIATDLA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P ++ V + +L    ++ LHR+GRTGRAG  G+++ ++      R E + R  N
Sbjct: 307 ARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIARYLN 366

Query: 365 VSVVWEP 371
           ++  +EP
Sbjct: 367 LT--FEP 371


>gi|295131314|ref|YP_003581977.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|291375120|gb|ADD98974.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
          Length = 700

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++R      P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + 
Sbjct: 296 REDNR------PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKR 349

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L
Sbjct: 350 GVDLVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRL 409

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  A+  L + Y  + V   +  +    + + + A  +   ++   +  I    G
Sbjct: 410 LFSATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVGLMCEIANRSG 469

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDV
Sbjct: 470 --HTIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDV 527

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A
Sbjct: 528 AARGIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQA 587

Query: 364 NVSVV 368
            V  V
Sbjct: 588 GVKPV 592


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVV--EELPS 407


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 188/335 (56%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E+GY   T +QE  +   L+ +D+L  AQTG+GKT +F L +   L+ +N R +  
Sbjct: 15  KALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEHLI-KNPRANTP 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTREL  Q+    +          AV  GGV   R+   ++ G  ++V  P
Sbjct: 74  KQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAP 133

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D + G+G +++S L+ +VLDEAD MLD+GF  DI  I+   P++R+ L+FSAT+  
Sbjct: 134 GRLLD-LMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPR 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
           +I  LA +   D  RV +A  +     I    + V    D+ +A++N++       A+VF
Sbjct: 193 SIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKVSRAVVF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   ++  + L ++     A+ G  SQ  R  A++  R G  +V +ATD+AARGID+
Sbjct: 253 TLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIAARGIDV 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  V + +L + PE+ +HR GRT RAGR G +V
Sbjct: 313 DDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAV 347


>gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
           scrofa]
          Length = 844

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/400 (33%), Positives = 215/400 (53%), Gaps = 20/400 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K  + VA   GG     +   +
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKK--LAVACFYGGTPYGGQIDRM 366

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 367 RNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 426

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 427 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 486

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 487 VIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQ-DAQSLHGDIPQKQREITLKGFR 545

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 546 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHK 605

Query: 352 MQRRAERLFREANVSV--VWEPAPSVEAIR--ERDAQRIL 387
            + +   + ++A +    +  P+P+ E I+   +DA R+L
Sbjct: 606 EEYQLTLVEQKAGIKFKRIGVPSPT-EIIKASSKDAIRLL 644


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E+         
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L++G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  I    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 667

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 197/386 (51%), Gaps = 50/386 (12%)

Query: 8   PQVIGEALSERGYVNLTSVQEAIL----------NPDLREKDVLVSAQTGSGKTVAFGLA 57
           P++I  A+++ G+   T+VQ+ ++          +   R  D++VS+QTGSGKT AF L 
Sbjct: 86  PELIA-AVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLLP 144

Query: 58  LASTLL------------------------------------AENDRFSPASAPLALAIA 81
           +  TLL                                      N R   A+ P AL + 
Sbjct: 145 VLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATPGALILC 204

Query: 82  PTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA QV  + +E +    G+ +A  +GG+    +   LQN A +VV TPGRL D  R
Sbjct: 205 PTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQN-ADLVVATPGRLLDLQR 263

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            + L +  +K +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA+  
Sbjct: 264 SQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 323

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259
            ++  RV I S   +H++I         S     +++  LR      AIVF ST+     
Sbjct: 324 MREPQRVTIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 383

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 384 LANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 443

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
            L    E+  HR GRTGRAGR G+++
Sbjct: 444 GLPMKAEDYTHRIGRTGRAGRDGLAI 469


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/329 (36%), Positives = 184/329 (55%), Gaps = 7/329 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +  R      
Sbjct: 27  LKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQ---- 82

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +E+  L      + V    GGV +  +   L++GAHI+VGTPG
Sbjct: 83  --TLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L++ ++  +VLDEAD ML++GF+ ++E I++  P +R+ L+FSAT    I
Sbjct: 141 RIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            ++A       V V +AS +   +   +   +   +DR  A+  +L  +  ++A+VFC+T
Sbjct: 201 QSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L    F VVAL G+L Q++R   L    +    + +ATDVAARG+D+  L
Sbjct: 261 KRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           + VI+  ++ + E  +HR GRTGRAG KG
Sbjct: 321 DAVINYHVAYDTEVHIHRIGRTGRAGSKG 349


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/360 (36%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + ++ +R     
Sbjct: 20  ALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLHRVSSDENR-PLTG 78

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127
           AP AL + PTREL +QV  +L    + L    G    V    GG     +   L+ G  +
Sbjct: 79  APRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYEPQIEALRKGVDV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  +P  R+ ++FSA
Sbjct: 139 VVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQLTPDSRQAMLFSA 198

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   I TLA+ +  Q   +R         H      A      D+   +  IL+  G  
Sbjct: 199 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVELVSRILQARGRG 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ +  + +  LAE  F+V A+ G+L Q  R  AL+  R G   V +ATDVAA
Sbjct: 259 ATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEIDVLVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+  VI+ +   + +  +HR GRTGRAG+ G+++ ++  +   R E + +  N+
Sbjct: 319 RGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELARWEMIDKALNL 378


>gi|329941644|ref|ZP_08290909.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299361|gb|EGG43261.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 480

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 11/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L + G      +Q A L   L  +DVL   +TGSGKT+AFGL +   L   
Sbjct: 40  GLPPALLRVLGDHGVTVPFPIQAAALPDALAGRDVLGRGRTGSGKTLAFGLGM---LART 96

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QVG  L       G+ +A  +GGVS+ R+   L++GA
Sbjct: 97  AGRRAQPKEPLALVLVPTRELAQQVGEALTPYAEALGLRLATVVGGVSLGRQAAALRDGA 156

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +   G  +  ++  V+DEAD M DLGF   +  +LD      + ++F
Sbjct: 157 EIVVATPGRLHDLVERNGCRLGRVRIAVVDEADRMSDLGFLPQVTGVLDQVRGDGQRMLF 216

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y ++    ++   +   + ID+   LV   DR      I    G  
Sbjct: 217 SATLDRDVDHLVRAYLREPAVHSVDPSSGAVAAIDHHVFLVHGPDRYAVTTEIAARDG-- 274

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T+ L  +     AL    SQ +R+  L   +DG     +AT+VAA
Sbjct: 275 RVLLFLDTKHGVDQLTRHLRANGVAAAALHSGKSQPQRTGTLARFKDGGITALVATNVAA 334

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LVI+ + +++P++ LHR+GRT RAGR G  V ++    +R   ++  +A V
Sbjct: 335 RGLHIDDLDLVINVDPATDPKDYLHRAGRTARAGRSGTVVTLVLSGQRRETSQVMTDAGV 394

Query: 366 SVVWEPAPSVEAIRERDA 383
           +      P V  +R  +A
Sbjct: 395 T------PEVTKVRSGEA 406


>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 417

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 202/374 (54%), Gaps = 16/374 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  GY   T++Q+  +   L+  D++ +A+TGSGKT  F L L        ++     A
Sbjct: 16  LSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLL-------EKLHSIPA 68

Query: 75  P-----LALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCI-GGVSVHRERRDLQNGAH 126
           P      AL + PTRELAVQV + ++  Y++     + +V I GG +++ + + L  G  
Sbjct: 69  PGNNLTHALVLVPTRELAVQVSQSVDR-YSENCPRKIRSVAIYGGAAINPQMQSLSKGCD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +R   L++  LKA+VLDEAD MLDLGF D+++ ILD +P   + L+FS
Sbjct: 128 IVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L +   ++ V +++  E      +  RA+ V  ++R   + ++++    + 
Sbjct: 188 ATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIKQEKWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  ++ + +     L     Q   L G+L+Q+ER  AL+    GR ++ IATD+AAR
Sbjct: 248 LLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ +L     + +HR+GRT RAG  G+++  +        + + +   + 
Sbjct: 308 GIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLIEKRIRMK 367

Query: 367 VVWEPAPSVEAIRE 380
           +  E  P  E  +E
Sbjct: 368 IPREQIPGFERAQE 381


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA I+V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/338 (36%), Positives = 192/338 (56%), Gaps = 13/338 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94
           +D++  A+TGSGKT+AFG+     +L +N +    S    P  L ++PTRELAVQ+   L
Sbjct: 154 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKLGGGSKNVNPTCLVLSPTRELAVQISDVL 213

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                  G+      GG S   +   +++G  IV+GTPGRL D I    L +S +  VVL
Sbjct: 214 SEAGEPCGLKSICVYGGSSKRPQINAIRSGVDIVIGTPGRLRDLIESNELRLSDVSFVVL 273

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213
           DEAD MLD+GF + + FIL  + K R+M+MFSAT    +  LA+ +   + ++V I S +
Sbjct: 274 DEADRMLDMGFEEPVRFILSKTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIGSVD 333

Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268
              ++ D   ++  L +  RD  +V +L +YH ++    +VF   +    R  + L +  
Sbjct: 334 LA-ANHDVMQIIEVLDERARDQRLVALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 392

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           ++ V++ G  +Q ER+ +L + ++G   + +ATDVAARG+D+PD+E+VI+       E+ 
Sbjct: 393 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYSFPLTTEDY 452

Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           +HR GRTGRAG+KG++  F   QN     E   + REA
Sbjct: 453 VHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREA 490


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVV--EELPS 407


>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
 gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
          Length = 464

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA++++GY   + +Q   +   +  KDV+ +AQTG+GKT  F L +   L +   R  
Sbjct: 12  ILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLERL-SNGPRVK 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P     AL + PTRELA QV   +  LYAK   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 71  PNQV-RALVLTPTRELAAQVAESVA-LYAKNLPLSSAVVFGGVKINPQMMRLRQGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    L+ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT 
Sbjct: 129 ATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + V +++   N     +      V  S + N +  +L+ +     +V
Sbjct: 189 SDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R T  L     +  A+ G  SQ  R+ AL   +    +V +ATD+AARG+D
Sbjct: 249 FTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ EL    E+ +HR GRTGRAG +G ++ ++
Sbjct: 309 IEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLV 347


>gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 419

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL ++G+   T +Q   L   L+ KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F+  S P AL +APTRELAVQ+  + E L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQPDFA-TSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    SP++
Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA         + I  E +    I       +  D+   ++ ++
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSI 355


>gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
 gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
          Length = 412

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 201/372 (54%), Gaps = 4/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL +  +   T +QE ++   L  +DV+  A+TGSGK+ ++ L +   L  +  R  
Sbjct: 12  INKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPILELL--QKRRGE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             +    L + PTREL +QV +  E    + +T   V   IGG  +  +   +Q G  I+
Sbjct: 70  GKAKIKVLVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGDQLYAIQQGCDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GR  D +  K +N+SHL+ +VLDEAD+ML+LGF ++++ +L++ P+KR+ L+FSAT
Sbjct: 130 VATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAIPEKRQNLLFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  +A    +D+V V+I  +      I  R + V   +R   + ++++    K+ +
Sbjct: 190 YPEKILNIASRITQDSVEVSIDEDVPTVDTIIQRVIEVNRDNRGPLLRHLIKSEKLKHIL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + + +     +   ++ F   +  G+L Q++R+  L   RD +  +  ATD+AARG+
Sbjct: 250 VFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDKKINILFATDIAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ ++E VI+ +L  +P + +HR GRT RAG+ G+++  I    Q     + ++  V + 
Sbjct: 310 DIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQAHFSVIEKKCKVKIE 369

Query: 369 WEPAPSVEAIRE 380
            E     E I E
Sbjct: 370 KEQIEGFELIGE 381


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 207/399 (51%), Gaps = 24/399 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KDVL S++TGSGKT+AF L +    L +   FS  + P A+ +APT
Sbjct: 40  TEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-KNDPRAVILAPT 97

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   L  +         +  GG + + +   L+     +V TPGRL DH+  + 
Sbjct: 98  RELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPKFIVATPGRLADHLEHQS 157

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTLAKNYQ 201
           L +  L+ ++LDEAD MLDLGF + ++ I  ++  +RR  LMFSAT+   A+   A N  
Sbjct: 158 LYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNML 217

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
            +  R+++   N +H DI  R  L    D   AI+N I+        ++F +TR+   R 
Sbjct: 218 DNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRL 277

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           TK+L E   + VALSG+++Q  R+N +        ++ + TDVA+RG+DL  +  VI+ +
Sbjct: 278 TKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVINFD 337

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           +  + E  +HR GRTGRAG+KG ++ ++ P++                 WE    VE   
Sbjct: 338 MPKHMEEYVHRVGRTGRAGKKGTAISLVGPKD-----------------WESFKRVETFL 380

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           ++D    + + L     +G + K     + K DP+K  A
Sbjct: 381 QQDLSFSVFEEL-KGKFKGLKPKHKRTFVKKGDPKKFKA 418


>gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 504

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 7/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 82  DMPAQLLTTLTREGMATPFPIQAATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 141

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   + +  PLAL + PTRELA QV   L        + +A  +GG+ +HR+   L+ GA
Sbjct: 142 S---AESGQPLALILVPTRELAQQVTAALTPYARAVKLRLATVVGGMPIHRQAGALRAGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 199 EVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 257

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 258 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHRTTTEIAARDG- 316

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L +   +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 317 -RVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFKTGHVTVLVATNVA 375

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   RL + A 
Sbjct: 376 ARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMARLMQAAG 435

Query: 365 VS 366
           ++
Sbjct: 436 IT 437


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 200/370 (54%), Gaps = 16/370 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P+ + E L  R   + +S+Q+AI+       DV+  A+TGSGKT+A+ L     L 
Sbjct: 106 FNFLPESLQETLKARNITSPSSIQQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMHLQ 165

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+     P + P  L +APTRELA Q+  + + L+AKT  +     GG+    +   L  
Sbjct: 166 AQ----PPVAGPRILVMAPTRELAQQIQTQYD-LFAKTCCLY----GGIPKPHQYVSLSE 216

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +++ TPGRL D I+G GL +  +  VVLDEAD MLD+GF D I  +L    K R+ L
Sbjct: 217 TPQVIIATPGRLLDFIKG-GLTLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTL 275

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            FSAT    +  LA +   +D + + +       +    ++V++A  ++   ++      
Sbjct: 276 FFSATWPQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAGGNKFEQLIEYFNQI 335

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VFC  +    +    L++H      L G+L Q +R   +Q  R+G+    I T+
Sbjct: 336 KDKKVLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLITTN 395

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE---- 357
           +A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG ++ F+ P+++  R +    
Sbjct: 396 LASRGLDVSDVDVVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDDLI 455

Query: 358 RLFREANVSV 367
           ++F++++  +
Sbjct: 456 KVFKQSSQEI 465


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 186/355 (52%), Gaps = 14/355 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL ++G ++   +Q   L   L  +D++  A+TG+GKT+ F + +   ++
Sbjct: 31  FDVEPEIVA-ALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHDII 89

Query: 64  AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              D        +  P AL I PTRELA QV  E+          +    GGV    +  
Sbjct: 90  GPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQVE 149

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D +    L +  ++ +V+DEADEMLD+GF  D+E ++   P +
Sbjct: 150 ALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIPPR 209

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDN 233
           R  ++FSAT+   +  LA+ Y  Q   +R    +++    RQ   + YR   V   ++  
Sbjct: 210 RHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYR---VHSLNKTE 266

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+       I+F  T+ +  R +  LAE  F   A+ G+L Q  R  AL+  R G
Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG KG ++  I
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFI 381


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 195/361 (54%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV   AQ+G+GKT  F +++    L + D  +  +   AL
Sbjct: 95  GFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSISI----LQQID--TSINECQAL 148

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L      +   CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 149 ILAPTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDMRKLEHGVHVVVGTPGRVYDM 208

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L    +K  VLDEADEML  GF+D I  +  +     ++++ SAT+   +  ++K
Sbjct: 209 INRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDVDVQVILLSATMPHDVLEVSK 268

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ + + +  +      I    + V   + +   + ++        A++FC+TR  V
Sbjct: 269 KFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCDLYETLTITQAVIFCNTRRKV 328

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 329 DMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 388

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L SN EN +HR GR+GR GRKG+++  + +  +R    + +  N  ++  P    + 
Sbjct: 389 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDKRTLNDIEQFFNTHIIEMPMNVADL 448

Query: 378 I 378
           I
Sbjct: 449 I 449


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 207/399 (51%), Gaps = 24/399 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KDVL S++TGSGKT+AF L +    L +   FS  + P A+ +APT
Sbjct: 40  TEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-KNDPRAVILAPT 97

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   L  +         +  GG + + +   L+     +V TPGRL DH+  + 
Sbjct: 98  RELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPKFIVATPGRLADHLEHQS 157

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTLAKNYQ 201
           L +  L+ ++LDEAD MLDLGF + ++ I  ++  +RR  LMFSAT+   A+   A N  
Sbjct: 158 LYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNML 217

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
            +  R+++   N +H DI  R  L    D   AI+N I+        ++F +TR+   R 
Sbjct: 218 DNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRSDTDRL 277

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           TK+L E   + VALSG+++Q  R+N +        ++ + TDVA+RG+DL  +  VI+ +
Sbjct: 278 TKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDVASRGLDLTSVTHVINFD 337

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           +  + E  +HR GRTGRAG+KG ++ ++ P++                 WE    VE   
Sbjct: 338 MPKHMEEYVHRVGRTGRAGKKGTAISLVGPKD-----------------WESFKRVETFL 380

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           ++D    + + L     +G + K     + K DP+K  A
Sbjct: 381 QQDLSFSVFEEL-KGKFKGLKPKHKRTFVKKGDPKKFKA 418


>gi|238878589|gb|EEQ42227.1| hypothetical protein CAWG_00429 [Candida albicans WO-1]
          Length = 529

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 185/318 (58%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + ++   +  + +     L I+PTRELA+Q+   L
Sbjct: 153 LSGKDVIGVAETGSGKTFAFGVPAINKIITTGNTKTLS----VLCISPTRELALQIYDNL 208

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L A +GV      GGVS   + R ++  A++VV TPGRL D I    +N+  +  +VL
Sbjct: 209 IELTADSGVNCVAVYGGVSKDDQIRKIKT-ANVVVATPGRLVDLINDGAINLGKVNYLVL 267

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++S  +R+ LMF+AT    +  LA N+    V+V +   +
Sbjct: 268 DEADRMLEKGFEEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRD 327

Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA-----IVFCSTRASVSRFTKVLAE 266
              ++     V+  ++  D++  ++ +LR + A  +     ++F   +   SR    L  
Sbjct: 328 ELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKR 387

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + F V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P++++VI+       E
Sbjct: 388 NRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIE 447

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG KG +
Sbjct: 448 DYVHRIGRTGRAGAKGTA 465


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 189/364 (51%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 438

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 176/335 (52%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++ +GY   T +Q   +   L  +DVL +AQTG+GKT AF L +   L     R     
Sbjct: 15  AIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLHLLSQSTQR---QR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP AL + PTRELA QVG  +        +      GGV +  +   L+ G  I+V TPG
Sbjct: 72  APRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRRGVDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    +++S ++  VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 132 RLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQNLLFSATYSREI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D +R+ +A  N     +      VA   + + + +++     +  ++F  T
Sbjct: 192 EQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHLILQGDWQQVLIFTRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L        A+ G  SQ  R+ AL   + G  R  +ATD+AARG+D+  L
Sbjct: 252 KHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATDIAARGLDIDRL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V +I
Sbjct: 312 PHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLI 346


>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 507

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 15/348 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ+I EA    G+   T +Q   +   +  +D++  AQTGSGKT AF + +   LL    
Sbjct: 91  PQII-EACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQLLQ--- 146

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SP   PL AL ++PTRELA Q+ ++ E L A  GV   V +GG+ V ++   L    H
Sbjct: 147 --SPQ--PLFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKPH 202

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+VGTPGR+  H+   KG ++  LK +V+DEAD +L + F ++I  IL   PK R   +F
Sbjct: 203 IIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNTYLF 262

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242
           SAT++  +  L K    + ++V +AS   ++S +D    +   +    +D  +  IL   
Sbjct: 263 SATMTSKVAKLQKASLVNPIKVQVAS--TKYSTVDTLVQQYCFIPYQHKDCYLTYILNEL 320

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +AIVF +T A+ +R + +L       + ++G + Q +R  +L   +     + +ATD
Sbjct: 321 SGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILVATD 380

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           VAARG+D+P + LV++ ++  N +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 381 VAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQ 428


>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 198/372 (53%), Gaps = 8/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72
           A+++ GY   T +Q+  +   +   D+L +AQTG+GKT  F L L   L   +   +P  
Sbjct: 15  AIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLEKLSQRDPGKTPQG 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  I+V T
Sbjct: 75  RRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQMMTLRGGVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FSAT S 
Sbjct: 135 PGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLPKQRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA         + +A  N     +  R + V    +   + +++     +  +VF 
Sbjct: 195 DIKALADKLLNQPTLIEVARRNTASERVSQRVLPVDRHRKRELLSHLISGGNWQQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++ T+ L +      A+ G  SQ  R+ AL+  + GR R  IATD+AARGID+ 
Sbjct: 255 RTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGRIRALIATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSV 367
            L  V++ EL + PE+ +HR GRTGRA  +G +V ++     +  R  E+L  RE    +
Sbjct: 315 QLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHSFLRDIEKLIKREIPREM 374

Query: 368 V--WEPAPSVEA 377
           +  +EP PS++A
Sbjct: 375 ISGFEPDPSIKA 386


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 56  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 35/369 (9%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---------NDRF 69
           GY + T VQ   +   +  +D++  AQTGSGKT AF L + S L+A           DR 
Sbjct: 99  GYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSGLVAPAGGGNGHGPRDRG 158

Query: 70  S---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           S    A+ P AL +APTRELA Q+  E +    +TG+ V V  GG  +  + RDL+ G  
Sbjct: 159 SFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMFSQLRDLEKGVD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRM 182
           ++V TPGRL D +    +++  +K +V+DEAD ML++GF   I  I+D  + PKK  R+ 
Sbjct: 219 LLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQIRKIVDMMNMPKKSVRQT 278

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT  P I  LA ++  + + V +         ID +   V   ++   +++IL+  
Sbjct: 279 MLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKIEFVNGGEKRGFLLDILQKQ 338

Query: 243 G---AKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
               +KN     +VF  T+         L  + F   ++ G+ +QQER  AL+  + G  
Sbjct: 339 SVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDRTQQERERALKSFKSGAT 398

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+P++  VI+ +L  + ++ +HR GRTGRAG+ G            +
Sbjct: 399 PILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTGRAGKAG------------K 446

Query: 356 AERLFREAN 364
           A  LF E+N
Sbjct: 447 ATALFTESN 455


>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 346

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/333 (36%), Positives = 183/333 (54%), Gaps = 39/333 (11%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +RG   L  +Q+A+L P L  +DV+  A+TG+GKT+AF L +   LL +      + 
Sbjct: 15  ALRKRGVDTLFPIQQAVLKPALSGEDVVGRARTGTGKTLAFALPVIERLLTDGTS-GRSR 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P  + +APTRELA QV  E+  + A +  +  VC+ GG  + ++   L+ G  IVVGTP
Sbjct: 74  NPKCIVLAPTRELAKQVENEI-CITAPS--LETVCVYGGTPIGQQEGKLRRGVDIVVGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +  + L++  ++ VVLDEAD+ML++GF +D+E IL   P+ R+  +FSAT+   
Sbjct: 131 GRVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQTFLFSATMPSW 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  + K + K             H  +D                        K AI F  
Sbjct: 191 VKQITKKFLKPG-----------HVVVDL----------------------DKKAICFTQ 217

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +    T  L   +   V L G+++Q +R   LQ  RD R  V IATDVAARG+D+ D
Sbjct: 218 TKRAADELTAALGRRVASEV-LHGDIAQAQRERTLQRFRDNRFSVLIATDVAARGLDISD 276

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++LVIH EL ++ E+ +HR GRTGRAG+ G ++
Sbjct: 277 VDLVIHYELPNDVESFVHRCGRTGRAGQLGAAI 309


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 208/383 (54%), Gaps = 31/383 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I Q + + L+  G+V  T VQ   + P L   D+L +A TG+GKT++F       L+  
Sbjct: 36  DISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSF-------LIPM 88

Query: 66  NDRFSPASAP---------LALAIAPTRELAVQVGRELEWLYAKTGVV----VAVCIGGV 112
            DR    S P         LAL + PTRELA+QV   L+  +     +    V VC GG+
Sbjct: 89  IDRLEEISKPSTRGAKNPILALILLPTRELAMQV---LDSYFKICPTLKSDAVLVC-GGL 144

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S + +   L  G  +VV TPGRL D +R + +++  +  +VLDE D MLD+GF   I+ I
Sbjct: 145 SENTQLEQLSRGPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRI 204

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + + PK R+ + +SAT+  +I  + ++Y  + VR+ I + ++    ++ R V   + D+ 
Sbjct: 205 VQALPKDRQTMCYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVELR-VYTVMQDQK 263

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMM 290
            A ++ +        +VF  T+    R  K L  A HL +V+   G+ SQ +R+ AL+  
Sbjct: 264 LAQLDKMLKEEEGTYLVFSRTKHGADRIAKKLEKAGHLTEVI--HGDRSQSQRTAALRNF 321

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIP 349
             G+AR+ +ATDVAARGID+  +  V++ +L +  ++ +HR GRTGRAG KG+ + FV P
Sbjct: 322 TMGKARILVATDVAARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTP 381

Query: 350 QNMQRRAERLFREANVSVVWEPA 372
              +  A +L RE  +   W  A
Sbjct: 382 LE-KGDARKLERELKIKFQWHEA 403


>gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 400

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 192/368 (52%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + + S +   
Sbjct: 34  DLPKDLLRGVYSYGFEKPSAIQQRAIMPLAKGLDIIAQAQSGTGKTATFTIGILSQI--- 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N       A   L IAPTRELA Q+ + +  L     +    CIGG  V  + ++LQNG 
Sbjct: 91  NINLMKCQA---LIIAPTRELAQQIQKVVTSLGEYLKIKCYACIGGTRVSDDVQNLQNGV 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ + +    +    +K  VLDEADEML  GF+D I  I    P   ++ +F
Sbjct: 148 HIVVGTPGRVYEMLSRGVITRESVKIFVLDEADEMLSRGFKDQIYEIFRLLPLDIQVGLF 207

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHG 243
           SAT++    ++   + K+ V++ +  +      I   Y  V  A   + + + ++     
Sbjct: 208 SATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFYVNVGPAEQGKFDVLTDLYETLS 267

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +++FC+TR  V   T  + E  F V +  G+  Q++R   LQ  R G  RV I TD+
Sbjct: 268 ITQSVIFCNTRRKVDWLTTKMTEQQFTVSSTHGD--QKDRDGILQSFRSGTTRVLITTDL 325

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  I QN Q + + L    
Sbjct: 326 LARGIDVQQVSLVINFDLPLNLENYIHRIGRSGRFGRKGVAINFITQNEQEKIQDLCSHY 385

Query: 364 NVSVVWEP 371
           N  +   P
Sbjct: 386 NTFIQEMP 393


>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 412

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 188/336 (55%), Gaps = 3/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   TS+Q+ ++   +  KD+L SA TG+GKT AF L +   LL +  R  P S
Sbjct: 14  AVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQFLL-DYPRRHPGS 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L + PTRELA QV  +   L   T +V  V  GG++   ++  L+    I+V TPG
Sbjct: 73  TRI-LILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKETLEKNLDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA- 192
           RL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  +++ ++FSAT+  A 
Sbjct: 132 RLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSMLFSATLEGAG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I+  AK+   D V +  AS  ++   I     L   +    A++  +  H  ++A+VF  
Sbjct: 192 ISRFAKDILNDPVELEAASSRKEQGKIHQWLHLADDAKHKYALLKHILTHQVESAVVFVK 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++   ++L    F V  L GE+ Q +R+ ++   R G  ++ IATDVAARGID+ +
Sbjct: 252 TRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIATDVAARGIDVEN 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  VI+ ++    +  +HR GRTGRAG KG ++ ++
Sbjct: 312 ISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLV 347


>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
 gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
          Length = 485

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 72  EACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMNK-----PQ 126

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 127 SL-FGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAISLGKKPHIIVATP 185

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 186 GRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 245

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q      ++ L +    +D  +V +L  +  ++AIVF
Sbjct: 246 KVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVF 305

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 306 TRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 365

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q
Sbjct: 366 PSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQ 405


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 180/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVI------DTAVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VRV +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N EN +HR GR+GR GRKG+++
Sbjct: 338 NYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 470

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 194/351 (55%), Gaps = 20/351 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G+   T +Q   +   L  KD++  A+TGSGKT AF + +   LL +  R     
Sbjct: 55  ACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQKLLEKPQRL---- 110

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              +L +APTREL++Q+  +L  L ++ G+ V + +GG+ +  +   L    HI+VG+PG
Sbjct: 111 --FSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQLSKKPHIIVGSPG 168

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           R+ DH++  KG ++  +K +VLDEAD++L   F D +  I+ S PK +   ++SAT++  
Sbjct: 169 RIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKDKVTYLYSATMTSK 228

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           IT L K      +++N+ ++      +  + +L+ L  +   +  IL  +     +VFC+
Sbjct: 229 ITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACILWKYSTSTIMVFCN 288

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR-------------VCI 299
           T  +  + T  L    F+ V L G+LSQ +R N+L   + G+ +             + +
Sbjct: 289 TCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIPQPHIISGLFNILV 348

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            TDV +RG+D+P ++LVI+ ++ +  ++ +HR GRT RAG+ G+S+ +I Q
Sbjct: 349 VTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQ 399


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 187/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 219 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 278

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G ++V GT
Sbjct: 279 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 338

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 339 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVSSPGMPSKENRQTLMFS 397

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K D + + +       SD++   + V    +   ++++L+  G +
Sbjct: 398 ATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGME 457

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 458 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 517

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 518 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 557


>gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 465

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 188/338 (55%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70
            +++ G+   + +Q  +L   L+  D +  AQTG+GKT AF + + +  L    E +RF 
Sbjct: 97  GVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFNDQLCHPIEGERF- 155

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
               P AL IAPTREL +Q+  +   L   TG+ VA  IGG+   ++   LQ     +VV
Sbjct: 156 -VGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQLNRLQRDVIDLVV 214

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D +  + L + H++ +VLDEAD MLD+GF   ++ I+ + P+K  R+ L+FSA
Sbjct: 215 ATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRACPRKESRQTLLFSA 274

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  I  L++ +  + V V I  ++     +D +  +V+   R   + N++R     + 
Sbjct: 275 TFTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSEQRFRVLNNLVRSDDCSSV 334

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF + R  V R  + L +   +   LSGE+ Q +R+  L+  ++G   V +ATDVA RG
Sbjct: 335 IVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFKNGEITVLVATDVAGRG 394

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  V++  L  +PE+ +HR GRTGRAG  G S+
Sbjct: 395 IHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSI 432


>gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2]
          Length = 435

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/348 (33%), Positives = 190/348 (54%), Gaps = 6/348 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+   + N T +Q   L P L   D+   AQTG+GKT+AF +A    
Sbjct: 10  FSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTIAFLVATFHY 69

Query: 62  LL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LL  A+ND  S +  P A+ +APTRELAVQ+  + + L   TG+ + +  GG     +R 
Sbjct: 70  LLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
            L+ G  I++GT GR+ D+ +     +++++  VLDEAD M DLGF  DI F+    P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIRFLFRRLPPA 189

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  ++FSAT+S  +  LA  +  +   V +A E    + +       +  D+   +++
Sbjct: 190 TERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLS 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AIVF +T+ S  R T  L     +V  LSG++ Q++R   L+    G+  +
Sbjct: 250 LFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+ +  +  V + +L  + E+ +HR GRTGRAG+ G+++
Sbjct: 310 LVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAI 357


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 188/335 (56%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E+GY   T +QE  +   L+ +D+L  AQTG+GKT +F L +   L+ +N R +  
Sbjct: 63  KALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEHLI-KNPRANTP 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTREL  Q+    +          AV  GGV   R+   ++ G  ++V  P
Sbjct: 122 KQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVEAMRRGVDVLVAAP 181

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D + G+G +++S L+ +VLDEAD MLD+GF  DI  I+   P++R+ L+FSAT+  
Sbjct: 182 GRLLD-LMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQRQTLLFSATMPR 240

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
           +I  LA +   D  RV +A  +     I    + V    D+ +A++N++       A+VF
Sbjct: 241 SIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNMVESPKVSRAVVF 300

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   ++  + L ++     A+ G  SQ  R  A++  R G  +V +ATD+AARGID+
Sbjct: 301 TLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVLVATDIAARGIDV 360

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  V + +L + PE+ +HR GRT RAGR G +V
Sbjct: 361 DDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAV 395


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 203/392 (51%), Gaps = 20/392 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   GY   T +Q   +   L  +D+L  A+TGSGKT AF L L   L+ +
Sbjct: 30  NLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQKLVGQ 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRER 118
             R    +   AL + PTRELA QV       G EL    A    V+AV  GGVSV+ + 
Sbjct: 90  --RAGGGNHVGALVLVPTRELAQQVADSFISYGAEL----APRAKVIAV-FGGVSVNSQM 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I+V TPGRL D +    + +S LKA+VLDEAD ML+LGF +++  IL   P 
Sbjct: 143 LALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPD 202

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT    + +L      D V + +  +  Q +DI+ R   V  S++   +  +
Sbjct: 203 QKQTLLFSATFPEEVLSLTAKLLTDPVEIQM--QEAQSADIEQRVYTVNRSNKTALLAEL 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++    +  +VF S + S     + L +         G+ +Q  RS  L   ++G   V 
Sbjct: 261 IKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+  L +VI+ EL  +P + LHR GR+GRAG  G ++ +I  +     + 
Sbjct: 321 IATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFKV 380

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           + ++  + +  E  P  EA    DA+  L  P
Sbjct: 381 IEKKNKLRLPREQYPGFEA----DAEAPLDCP 408


>gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 738

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           IP  I + + E GY   + +Q   +   ++ +D++  A+TGSGKT AF + +   +    
Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L +++R      P AL +APTRELA Q+  E        G      +GG SV  ++  L
Sbjct: 382 PLNDDNRHL---GPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFAL 438

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           ++GA I++ TPGRL D +    L +S  + VV+DEAD M+DLGF  D+ FILDS P    
Sbjct: 439 RDGAEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFV 498

Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R   +FSAT+ PA+  LA+ Y      V I +       ++
Sbjct: 499 KPDDSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVE 558

Query: 221 YRAVLVALSDRDNA-IVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            R   V   ++  A ++ ILR  G     IVF + + +     K + +     V L    
Sbjct: 559 QRVEFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGK 618

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  ALQ +RDG   V +ATD+A RGID+PD+ LVI+ ++S   E  +HR GRTGRA
Sbjct: 619 SQEQREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRA 678

Query: 339 GRKGMSVFVI 348
           G+ G+++  +
Sbjct: 679 GKTGVAITFL 688


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+++G ++   +Q   L   +   D++  A+TG+GKT+ F + +   ++   D
Sbjct: 41  PEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGD 99

Query: 68  R----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                     AP AL + PTRELA QV  E+    +     +    GGV    + + L++
Sbjct: 100 EGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKD 159

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGRL D ++   L +  ++ +VLDEADEMLD+GF  D+E ++ ++P +R  +
Sbjct: 160 GVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTM 219

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237
           +FSAT+   +  LA+ Y      +  A  +      RQ     YR   V   +++  +  
Sbjct: 220 LFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYR---VHSMNKEEVVAR 276

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+       I+F  T+ S  R    L    F   A+ G+L+Q  R  AL+  R G+  V
Sbjct: 277 ILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDV 336

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG  G +V  +
Sbjct: 337 LVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFV 387


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 203/369 (55%), Gaps = 13/369 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+V+ T +Q       L+ +D++  A+TGSGKT+  G  + + +L + 
Sbjct: 155 FPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL--GYLIPAFILLQQ 212

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R +  + P  L +APTRELA Q+  E+   + ++  V   C+ GG     + ++L+ GA
Sbjct: 213 RRNNAQNGPTVLVLAPTRELATQIQDEV-MKFGRSSRVSCTCLYGGAPKIPQLKELERGA 271

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R+ LMF
Sbjct: 272 DIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQTLMF 331

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           +AT    +  +A +     V+VNI S +    +  I     +V   ++D  +  ILR   
Sbjct: 332 TATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRRLEQILRTQE 391

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K AI+FCST+    +  + +  + F   A+ G+ SQ ER  AL   R G++ + +AT
Sbjct: 392 RGSK-AIIFCSTKRLCDQLARSIGRN-FGAAAIHGDKSQGERDWALNQFRSGKSPILVAT 449

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVAARG+D+ D+ +VI+ +  S  E+ +HR GRTGRAG  G+S  F   Q+ +  A+  +
Sbjct: 450 DVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLVK 509

Query: 359 LFREANVSV 367
           L   AN  V
Sbjct: 510 LLEGANQHV 518


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  R  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA ++V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  R  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA ++V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+++G ++   +Q   L   +   D++  A+TG+GKT+ F + +   ++   D
Sbjct: 41  PEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPILHDIIGPGD 99

Query: 68  R----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                     AP AL + PTRELA QV  E+    +     +    GGV    + + L++
Sbjct: 100 EGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGFDSQIQSLKD 159

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGRL D ++   L +  ++ +VLDEADEMLD+GF  D+E ++ ++P +R  +
Sbjct: 160 GVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIAATPPERHTM 219

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVN 237
           +FSAT+   +  LA+ Y      +  A  +      RQ     YR   V   +++  +  
Sbjct: 220 LFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYR---VHSMNKEEVVAR 276

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+       I+F  T+ S  R    L    F   A+ G+L+Q  R  AL+  R G+  V
Sbjct: 277 ILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFRHGKVDV 336

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG  G +V  +
Sbjct: 337 LVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFV 387


>gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group]
 gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group]
          Length = 460

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 22  LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 81

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 82  MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 142 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 202 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 262 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 321 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 373


>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
 gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
          Length = 447

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLVTHQPHGKSRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  +++ TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KSLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF
Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
            +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +
Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371

Query: 368 V---WEPAPSVEA 377
               +EP PS++A
Sbjct: 372 TTPGYEPDPSIKA 384


>gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 487

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 194/347 (55%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     +   T +Q   + P L+ KD++  AQTGSGKT AF + + + L  + 
Sbjct: 74  VPELI-EACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQ 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 133 QPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPH 186

Query: 127 IVVGTPGRLCDH--IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRML 183
           I++ TPGRL DH  +  +G  +   + +V+DEAD +L++ F   ++ IL + P K R   
Sbjct: 187 IIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLNMKFGPVLDRILKNIPTKVRTTY 246

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L    
Sbjct: 247 LFSATMTSKIDKLQRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFI 306

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDV
Sbjct: 307 GKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+P ++LVI+ ++  + ++ +HR GRT RAGR G SV ++ Q
Sbjct: 367 AARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ 413


>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
           DSM 265]
          Length = 412

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 183/335 (54%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL E GY + T +Q   +   L+  D+L  AQTG+GKT AF + +   L  E+    
Sbjct: 12  ILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQRL-GESRVQG 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L + PTRELA+Q+G         T +   V  GGV+ + +   L+NG  I+V 
Sbjct: 71  RIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISRLKNGVDILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    +N+  ++ +VLDEAD MLD+GF  DI  +L + PK+++ L FSAT+ 
Sbjct: 131 TPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEKQSLFFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  L+     +  ++++   +     I+ +   V   ++   +V++L+      A+VF
Sbjct: 191 PDIVRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLLKNPDITTALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L ++     A+ G  +Q  R  AL   +  + RV +ATD+AARGID+
Sbjct: 251 TRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRVLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L+ VI+ + S+ PE  +HR GRTGRAG  G ++
Sbjct: 311 DELQHVINYDTSNIPETYVHRIGRTGRAGASGTAI 345


>gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 404

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF
Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
            +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +
Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371

Query: 368 V---WEPAPSVEA 377
               +EP PS++A
Sbjct: 372 TTPGYEPDPSIKA 384


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 195/370 (52%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L +
Sbjct: 46  NLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQ 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D         AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G 
Sbjct: 102 LD--YDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   + +   + ++      
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  N
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQRFYN 399

Query: 365 VSVVWEPAPS 374
           V+V  E  PS
Sbjct: 400 VTV--EELPS 407


>gi|68484469|ref|XP_713845.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
 gi|68484548|ref|XP_713805.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
 gi|74656226|sp|Q59W52|PRP28_CANAL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|46435319|gb|EAK94703.1| hypothetical protein CaO19.672 [Candida albicans SC5314]
 gi|46435361|gb|EAK94744.1| hypothetical protein CaO19.8289 [Candida albicans SC5314]
          Length = 581

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 29/363 (7%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF----S 70
           +S+ GY   TSVQ A +   L+++DV+  A+TGSGKT+AF + + + +L+ ++ +     
Sbjct: 183 ISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEK 242

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
            ++ P+ L +APTRELA+Q+ +E E    K G  V   IGG         + Q G H++V
Sbjct: 243 ISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIV 302

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177
            TPGRL D I  K +++S    +V+DEAD M+D+GF  D+  +LD  P            
Sbjct: 303 ATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLSSTIDGR 362

Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALS 229
               +KR  +MF+ATISP +  L K Y  D   + I        +I    ++ +     +
Sbjct: 363 IFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEA 422

Query: 230 DRDNAIVNILRYHG--AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            + N ++ I+R H    +N   I+F + +      ++ L+ +    V + G  SQ  R  
Sbjct: 423 TKFNKLIKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQ 482

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+   R+  + V IATDVAARGID+P++ LVI+ ++    +  +HR GRTGRAG  G S 
Sbjct: 483 AITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESF 542

Query: 346 FVI 348
             I
Sbjct: 543 TFI 545


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 196/365 (53%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I E  +++G+   T++Q   +   L  +D++  AQTGSGKT+A+ +A A   +   
Sbjct: 129 LPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY-IAPALVHITHQ 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+      P+AL +APTRELA Q+ +       +         GG     + RDL+ GA 
Sbjct: 188 DQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDLERGAE 247

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 248 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWS 307

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+ +  D +++NI S N   +    + V V    ++D  ++ +L    A+
Sbjct: 308 ATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE 367

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    I+F  T+  V   T+ +  + ++ V++ G+ SQQER   L   R+GR  + +ATD
Sbjct: 368 NETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATD 427

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L   
Sbjct: 428 VAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGDLINV 487

Query: 360 FREAN 364
            REAN
Sbjct: 488 LREAN 492


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL  N 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLDSNR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG  I
Sbjct: 69  SASRKTAR-ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTALENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    ++++HL+ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 186/341 (54%), Gaps = 2/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+  +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LL++ ++ +
Sbjct: 12  ILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE-LLSKGEK-A 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++   AL + PTRELA QV            +   V  GGV ++ +   L+ G  ++V 
Sbjct: 70  RSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRRGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      ++   L+ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FSAT S
Sbjct: 130 TPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQTLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+N  KDAV V++   N     I    + V  S +  A+  +++       +VF
Sbjct: 190 DDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFLIQSRDLSQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R   +  +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+
Sbjct: 250 SRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L  V++ +L + P + +HR GRTGRAG  G ++ ++ ++
Sbjct: 310 DQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSED 350


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 206/369 (55%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   + + +
Sbjct: 29  ILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---SRKPT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA+QV   +         + +V  +GG     + R L+ G  +++
Sbjct: 86  IEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGVQVII 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M SAT 
Sbjct: 146 ATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMSSATW 205

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAI 248
             A+  +A+++  +  +V+I  E+   + ID         + ++N ++ +L     K A+
Sbjct: 206 DGAVGKIAESFTVNPEKVSIKVES---AHIDESVYYCDDFNHKNNILLQVLNNPKIKQAV 262

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  + +ATDVAARGI
Sbjct: 263 IFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAARGI 322

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFREAN 364
           D+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E     L R+ +
Sbjct: 323 DISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKRQMS 382

Query: 365 VSVVWEPAP 373
           VS +    P
Sbjct: 383 VSTIEGLEP 391


>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 497

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 186/337 (55%), Gaps = 5/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND---RFS 70
           A+ + GY N T +Q   + P L  +D+L  AQTG+GKT AF L +   L    D   R  
Sbjct: 15  AVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQRLAETGDGNARPR 74

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             + P+ AL + PTRELA Q+G  +        +   V  GGV+ +R+   L+ G  I+V
Sbjct: 75  RGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQNRQVDALRRGIDILV 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    +++  L+  VLDEAD MLD+GF  DI  I+ + P +R+ L+FSAT+
Sbjct: 135 ATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAAVPSERQTLLFSATM 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAI 248
              I +LA    ++ V+V++  E+     ++    LV+  D+ + +  +LR        +
Sbjct: 195 PGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVYLVSREDKQSLLTELLRDDPEMAKVL 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  K L++      A+ G  SQ  R  AL+  + G  RV +A+D+AARG+
Sbjct: 255 VFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKRGDTRVLVASDIAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  L  V++ +L + PE  +HR GRTGRAG +G+++
Sbjct: 315 DIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAM 351


>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 178/335 (53%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L           
Sbjct: 19  ALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPILQRLTTGQTPERKPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   +        +      GGV+++ + + L+    IVV TPG
Sbjct: 79  RPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQIKALRGPMDIVVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  ++   PK+R+ LMFSAT S  I
Sbjct: 139 RLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPKQRQNLMFSATFSGEI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA +       V++A  N     +     LV  S +   + +++R +     +VF  T
Sbjct: 199 RTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELLSHLIRSNDWGQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +      A+ G  SQ  R+ AL+  + G   V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G ++ ++
Sbjct: 319 PQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLV 353


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 184/343 (53%), Gaps = 7/343 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +  +T VQE  +   L  +D++  AQTG+GKT A+ L L + LL E +  +   +   + 
Sbjct: 21  FQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLLNRLLLEGNEKNVVKS---VI 77

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGAHIVVGTPGRLC 136
           I PTRELA Q+  + +       V  AV  GG       +++R LQ GA +V+ TPGRL 
Sbjct: 78  IVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKRGLQMGADVVIATPGRLI 137

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
            H+    +++SH+  ++LDEAD MLD+GF DDI  I+   PK R+ LMFSAT+ P I  +
Sbjct: 138 SHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKSRQTLMFSATLPPKIRQM 197

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           AK    D   VNIA  ++ +  I+  A +     +   +  +  +      I+F S++  
Sbjct: 198 AKQILNDPAEVNIAI-SKPNEAIEQGAYICYEGQKLGIVREMFSWPSESKTIIFSSSKQK 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      L      V  +  +L Q++R   +   ++ + R+ +ATD+ ARGID+ D+ +V
Sbjct: 257 VKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVATDIVARGIDIEDIGMV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           I+ ++  +PE+ +HR GRT RA   G +V  + +  Q +  R+
Sbjct: 317 INYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKFHRI 359


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 7/340 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+   LSE+GY N+T++QE  +   L  +D+L  + TGSGKT AF + +    L    +F
Sbjct: 65  VMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPIIEHALKNPGQF 124

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +      AL + PTRELA+Q+ +E + L     +  A  IGG +++ + + L    H++V
Sbjct: 125 T------ALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMKVLSRKLHVIV 178

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D    K L ++ +K +VLDE D MLD+GF +D++ ++    ++ + ++FSAT+
Sbjct: 179 GTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQREQTMLFSATL 238

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAI 248
            P    L ++  K+ V V I +    + +I+   + V    D+   + ++ +       I
Sbjct: 239 EPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADLFQNRAMDKVI 298

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R +K L +   +   + G  SQ  R+  ++  + G  RV +ATDVAARGI
Sbjct: 299 VFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVLVATDVAARGI 358

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ +L    ++ +HR GRTGRAG+ G ++  +
Sbjct: 359 DVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFV 398


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/401 (36%), Positives = 215/401 (53%), Gaps = 32/401 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND 67
           + I ++++  GY   T VQ   + P L+  D+ V + TGSGKT AF L AL   L A ND
Sbjct: 10  EAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPALQRVLAARND 69

Query: 68  RFSPASA--------PLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRE 117
              P+ A        P  L +APTRELA+QV +     Y +   G+ VA  +GGV    +
Sbjct: 70  ---PSKARAKGQVCGPRVLVLAPTRELAMQVSKAAST-YGQHVAGLRVATIVGGVPYPAQ 125

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+    I++ TPGRL DH+      +  ++ ++LDEAD MLD+GF +DIE I +S P
Sbjct: 126 LAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERIAESLP 185

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAI 235
           ++R+ +M SAT +  +  LA    K DA R+ I S    H +I+ + +   ++  +   +
Sbjct: 186 QERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEHKAKLL 245

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMR 291
            ++L     + A+VF ST+    R    LA HL++    V  L G + Q  RS  L  +R
Sbjct: 246 EHLLTEREMQQALVFTSTQ----RDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMALR 301

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
           +G  +V IATDVAARGID+P +  VI+  L    E+ +HR GRTGRAGR G ++ +  + 
Sbjct: 302 NGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLAERR 361

Query: 351 --NMQRRAERLFREA-NVSVV--WEPA-PSVEAIRERDAQR 385
              M RR ++   +   V+V+   EP  P+ E    R A R
Sbjct: 362 DVGMIRRIQQFTTQTIPVTVIAGLEPTRPAPEMFLSRGAPR 402


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583


>gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group]
          Length = 414

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 185/333 (55%), Gaps = 5/333 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q  ++   L+ +DV+   QTGSGKT AF L +   LL    R        A 
Sbjct: 2   GWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR----PCFFAC 57

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ ++ E L +   +  +V IGG+    +   L    H+VVGTPGRL DH
Sbjct: 58  VLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDH 117

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +   KG + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSAT++  +  L 
Sbjct: 118 LTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLR 177

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +   K+ V+V +AS+      +     +V    +D  ++++L        +VF  T  S 
Sbjct: 178 RACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCEST 237

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG+D+  +++VI
Sbjct: 238 RLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVVI 297

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +   N ++ +HR GRT RAG+ G +V ++ Q
Sbjct: 298 NYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQ 330


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 195/369 (52%), Gaps = 8/369 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+N  I + I + LS  G  + T +QE  +      KDV+  AQTG+GKT+AF L +
Sbjct: 1   MKDFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E++          L + PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISLESNFVQ------VLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    +++ TPGRL DH+    + +  LK +VLDEAD+ML +GF++++E I+  + K
Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L FSAT++  +  LA  Y K+   V++ +E     +I    V      + +A+ ++
Sbjct: 175 KHQTLCFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQFVVETTDRRKQDALCSV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G+L+Q +R   ++  ++   +  
Sbjct: 235 LDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  E 
Sbjct: 295 IATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLET 354

Query: 359 LFREANVSV 367
           + +E  +++
Sbjct: 355 IEKEIKLTI 363


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/366 (36%), Positives = 195/366 (53%), Gaps = 10/366 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   + Q I   L+  G+   T +Q   +   L+ +D++  AQTG+GKT AFGL +
Sbjct: 1   MSTFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+  R  P +   AL +APTREL  Q+   L+    KT + V V +GGVS++++ 
Sbjct: 61  IEKLQADGKRPDPRNI-RALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D I  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 EQLARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-N 237
            R+ L+FSAT+   I  LA  Y  D V+V +    +    ++     V   D    I+  
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    ++VF  T+    +  K L +  F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 240 TLTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +ATDVAARGID+P +  V + +L    +  +HR GRT R GR G+++ F  P  +    
Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEI---- 355

Query: 357 ERLFRE 362
            RL R+
Sbjct: 356 -RLLRD 360


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 189/364 (51%), Gaps = 1/364 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L   L       +   
Sbjct: 15  ALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQHLGTAPQTVNGPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELA QV   L        +  AV  GGV +  +   L+ G  +++  PG
Sbjct: 75  KPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDALRRGVDLLIACPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA 192
           RL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ R+ L+FSAT    
Sbjct: 135 RLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQDRQTLLFSATFEEN 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  + ++ +++ +   N     I +R   V  + + + ++++L     +  +VF  
Sbjct: 195 IKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLLAQDSREQTLVFAR 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+  
Sbjct: 255 TKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLVATDIAARGIDIDQ 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++ R     V     
Sbjct: 315 LPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQIVRMLGRDVEIRDV 374

Query: 373 PSVE 376
           P  E
Sbjct: 375 PGYE 378


>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 671

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 182/337 (54%), Gaps = 4/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G +   ++QE  L   L   D++  A+TG+GKT+AFG+ +   + A ++      
Sbjct: 118 ALAEVGIIRPFAIQELTLPLALERTDIIGQARTGTGKTLAFGIPIVQVVTAPDEGAD--G 175

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL VQV  ++       G+ V    GG +   +   L+ G  IVVGTPG
Sbjct: 176 RPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPG 235

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R K L+++ ++A+VLDEADEMLDLGF  D+E IL   P++R  ++FSAT+   +
Sbjct: 236 RLLDLARQKALDLAGVRALVLDEADEMLDLGFLPDVERILAFLPEQRHTMLFSATMPGPV 295

Query: 194 TTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +LA+ +      VR     E R   +           D+   +  +L+      A+VF 
Sbjct: 296 ISLARRFMTRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQAESRGLAMVFV 355

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR +  +  + LA   F    + G+L Q +R  AL+  R G+  V +ATDVAARGID+ 
Sbjct: 356 RTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDVG 415

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  V++ +   +    LHR GRTGRAG  G++V  +
Sbjct: 416 GVTHVVNYQCPEDEHAYLHRIGRTGRAGGSGVAVTFV 452


>gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 411

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 199/364 (54%), Gaps = 15/364 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P+ + E L   G+   T +QE  +   L+ KD++  AQTG+GKT ++ L + + + 
Sbjct: 6   FNFVPE-LQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVLNKIY 64

Query: 64  A-ENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGG--VSVHRERR 119
             + ++ +       L + PTRELA+Q+ +++  L Y      +AV  GG  V   +++R
Sbjct: 65  QKQTEKIN------TLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQKR 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G +I+V TPGR+  H+    +    L+ ++LDEAD MLD+GF DDI  I+   P+K
Sbjct: 119 SLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  LAK   K    VNIA  ++    I+  A +   + +   +++IL
Sbjct: 179 RQNLLFSATMPPRIRGLAKKILKHPAEVNIAI-SKPSEGINQLAYMAFDNQKGRLLMSIL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G K+ I+F S + +V      L +   +  A   +L Q +R   +   + G+  V +
Sbjct: 238 KDGGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQLSVLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRA 356
            TDV +RGID+  ++LV++ ++  +PE+ +HR GRT RA   G ++  I    QN   R 
Sbjct: 298 GTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNKFHRI 357

Query: 357 ERLF 360
           E+L 
Sbjct: 358 EKLI 361


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 59  GFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTR+LA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        ++VF +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVVFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV +   P+   E 
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNVLIEELPSNVAEL 412

Query: 378 I 378
           +
Sbjct: 413 L 413


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL  N 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLDSNR 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG  I
Sbjct: 69  SASRKTAR-ALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAALENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    ++++HL+ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTREL  QV ++   +  K  + VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E+         
Sbjct: 48  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 99

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L++G H+V GTPGR+
Sbjct: 100 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 158

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 159 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 218

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 219 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 278

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 279 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 338

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 339 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 378


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/338 (35%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  R  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA ++V 
Sbjct: 71  -ANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V +++    +  +VF
Sbjct: 190 TEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
 gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
          Length = 474

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 191/346 (55%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IPQ+  EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +   L+ + 
Sbjct: 53  IPQLC-EACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPILQALMDKP 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L +APTRELA Q+    E L +   V   V +GG+ +  +   +    H
Sbjct: 112 QPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRPH 165

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   I+ IL   P++RR  +F
Sbjct: 166 IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFLF 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+S  + +L +    + +RV+++S   Q  S +    + +    +D  ++ +L  H  
Sbjct: 226 SATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQYYMFIPHKHKDVHLIWLLNEHIG 285

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T    +R   +     F  +AL G+LSQ  R  ++   R     + IATDVA
Sbjct: 286 QTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRSILIATDVA 345

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P ++LV++ +L+++ +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 346 ARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQ 391


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 179/343 (52%), Gaps = 9/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G    T +QE  +      KD+L  +QTG+GKT+AF       L+   D  SP 
Sbjct: 14  DTLKKNGIKTPTPIQEESILHIKNNKDILAQSQTGTGKTLAF-------LIPIFDSISPK 66

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  +  L +APTRELA+Q+  E E L     + V    GG  +  +   L+    +V+ T
Sbjct: 67  NQNIQTLILAPTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKLKRNIQLVIAT 126

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  K +++S L  +VLDEAD+M+ +GF+++IE I+  + KKR+ L FSAT+  
Sbjct: 127 PGRLLDHLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQTLCFSATLDS 186

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA  Y KD V V I S+      I    V      +  A+  +L       AI+FC
Sbjct: 187 QVKKLAYRYMKDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDEDNPFMAIIFC 246

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + LA   +    L  ++ Q +R   ++  R    +  IATDVA+RG+D+ 
Sbjct: 247 RTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLIATDVASRGLDIT 306

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
            +  + + ++    E+ +HR GRTGR G  G + +FV P+N +
Sbjct: 307 GITHIYNYDIPETSEDYIHRIGRTGRIGNDGYTCMFVDPKNTK 349


>gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
 gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
          Length = 437

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 189/342 (55%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNKDKMTLLQTLIEEDW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 427

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L+ GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      D +     SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 20  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQV + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 74  ILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 254 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 313

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG++V
Sbjct: 314 NYDLPNNRELYIHRIGRSGRYGRKGVAV 341


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 194/365 (53%), Gaps = 14/365 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + +++  AL   GY   TS+Q   +   +  +D+L  AQTG+GKT AF L + + L A+
Sbjct: 8   GLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNRLAAD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNG 124
             R +P +A   L +APTRELA Q+              V V +GGVS HR + D L  G
Sbjct: 68  RRRPAPFTA-RTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVS-HRPQIDMLARG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI    L ++  + +VLDEAD MLDLGF   I  I+   PKKR+ L+
Sbjct: 126 LDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPKKRQTLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA++  ++  +V++         +     LV    + + ++ ++     
Sbjct: 186 FSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFLVDGGAKRDMLIELMNDADV 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             AIVF  T+    R    +AEHL        A+ G  SQ +R  AL   R GR RV +A
Sbjct: 246 SRAIVFTRTKRGADR----VAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           TD+AARGID+  +  V++ EL   PE  +HR GRT RAG  G ++ +     + + R+ E
Sbjct: 302 TDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQIE 361

Query: 358 RLFRE 362
           +L R+
Sbjct: 362 KLTRQ 366


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E+         
Sbjct: 48  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 99

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L++G H+V GTPGR+
Sbjct: 100 -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 158

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 159 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 218

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 219 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 278

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 279 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 338

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 339 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 378


>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 451

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 194/376 (51%), Gaps = 7/376 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY   T VQ+  +   L  +D++ SAQTG+GKT  F L L   L+ +  
Sbjct: 10  PEIL-RAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQP 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  +
Sbjct: 69  HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSA
Sbjct: 129 LVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+    + + + +A  N     +      V    +   +  ++     +  
Sbjct: 189 TFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 249 LVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREAN 364
           +D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++  
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368

Query: 365 VSVV---WEPAPSVEA 377
             +    +EP PS++A
Sbjct: 369 PRMTTPGYEPDPSIKA 384


>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
          Length = 472

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +   F   
Sbjct: 65  EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    + +    +D  +V +L     ++ I+F
Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q
Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 182/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E          
Sbjct: 53  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 104

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 105 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 163

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 164 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 223

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 224 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 283

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 284 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 343

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 344 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 374


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 174/333 (52%), Gaps = 1/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E+GY   T +Q   +   L+ KD+L  AQTG+GKT AF L +   L AE+ + +P 
Sbjct: 15  KALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQRL-AEDRKPAPR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTRELA Q+    +      G+ V    GGV    + + L  G  ++V TP
Sbjct: 74  RGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALAGGIDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K   +S  +  VLDEAD+MLDLGF   I  I     K R+ L FSAT+   
Sbjct: 134 GRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQNLFFSATMPSE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V+V++A +      ID R + +    +   +  +         IVF  
Sbjct: 194 IGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADTSFSRTIVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L     +  ++ G+ +Q +R  AL   + G  R  +ATD+AARGID+ D
Sbjct: 254 TKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATDIAARGIDVND 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ EL + PE  +HR GRT R G+ G+++
Sbjct: 314 VSHVINYELPNVPEAYVHRIGRTARKGKDGIAI 346


>gi|326923426|ref|XP_003207937.1| PREDICTED: nucleolar RNA helicase 2-like [Meleagris gallopavo]
          Length = 602

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 23/373 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  Q     L  R    L  VQ     P    KD++  A+TG+GKT +F + L   
Sbjct: 39  FSNFPLSQNTINLLKARDVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +       +P  L + PTRELA+QV R+ + L  K  V    C  G + ++ + DL
Sbjct: 99  LQSVSQDERRGRSPKVLVLVPTRELAIQVARDFKNLTRKLSVA---CFYGGAPYKAQFDL 155

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
            ++G  I+VGTPGR+ DHI+   L++S++K VVLDE D MLD+GF + +E IL  + KK 
Sbjct: 156 LKSGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKG 215

Query: 180 ----RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHS--DIDYRAVLVALSDRD 232
                + L+FSAT    +  +AK Y KD   +V++  +  Q +   +++ A+    S R 
Sbjct: 216 SENNPQTLLFSATCPRWVYDVAKKYMKDEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRV 275

Query: 233 NAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQM 289
             + +I++ Y G+    IVFC T+   +     L   L Q   +L G++ Q++R   L+ 
Sbjct: 276 EVLGDIIQVYSGSHGRTIVFCETKKEANEL--ALNSALKQEAQSLHGDIPQKQREITLKG 333

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V IAT+VAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ +    
Sbjct: 334 FRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRAGICICF-- 391

Query: 350 QNMQRRAERLFRE 362
              QR+ E L ++
Sbjct: 392 --YQRKEEDLLKQ 402


>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L E G      +Q A L   L  +DVL   +TGSGKT+AFGL L   L+   
Sbjct: 33  LPAPVLRTLGEHGVREPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPL---LVRTA 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A  PLAL + PTRELA QV   L       G+ +A  +GG+S+ R+   L++GA 
Sbjct: 90  GQRAEAKQPLALILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAALRDGAE 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D +  K   +  ++  VLDEAD+M DLGF   +  +LD   P+ +RML F
Sbjct: 150 VVVATPGRLHDLVERKACRLGRVRITVLDEADQMCDLGFLPQVTEVLDQVRPEGQRML-F 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V  ++       + +D+  ++V   DR      I    G  
Sbjct: 209 SATLDRDVDQLVSRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYAVTTEIAARDG-- 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAA
Sbjct: 267 RVLLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVATNVAA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LV++ +  ++ ++ LHR+GRT RAG  G  V ++    +R   RL  EA +
Sbjct: 327 RGLHVDDLDLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLVLSGQRRETSRLMAEAGI 386

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  +A+
Sbjct: 387 E------PTVTKVRSGEAE 399


>gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 436

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 189/343 (55%), Gaps = 6/343 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   ++ G
Sbjct: 76  EHEGRKP-NQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLGKIEEG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182
           A I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK R  
Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIKEELFYPSNEHKMALLQTLVEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQGDVDLLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|187926489|ref|YP_001892834.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|241665976|ref|YP_002984335.1| ATP-dependent RNA helicase DbpA [Ralstonia pickettii 12D]
 gi|187728243|gb|ACD29407.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|240868003|gb|ACS65663.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 465

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/363 (36%), Positives = 194/363 (53%), Gaps = 9/363 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L A + 
Sbjct: 17  PAVLAN-LAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLARLDARSF 75

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                    A+ + PTRELA QV +E+  L  A+  V V    GG  +  +   L++GAH
Sbjct: 76  DVQ------AMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAH 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P  R+ L+FS
Sbjct: 130 VIVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPADRQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L++   ++   V +  E    S I  R   V  S R +A+  +L+++   +
Sbjct: 190 ATYPEGIAKLSQRILRNPKEVKL-EERHDDSKIRQRFYEVTDSQRLHAVGQLLKHYRPVS 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + FC+T+        VL       +AL GEL Q+ER   L    +    V +ATDVAAR
Sbjct: 249 TLAFCNTKQQCRDLLDVLRAQGIHALALHGELEQRERDQVLIQFANRSCSVLVATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  LE VI+ +++ +PE  +HR GRTGRA   G ++ +   +   R   +       
Sbjct: 309 GLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADENGWALSLASMDEMGRVGNIEEAMGRE 368

Query: 367 VVW 369
           V W
Sbjct: 369 VEW 371


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 188/369 (50%), Gaps = 33/369 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   L   
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLMPLFLN 456

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G 
Sbjct: 457 Q-------GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 509

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P        
Sbjct: 510 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 569

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  +
Sbjct: 570 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 629

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +  L++ S++   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 630 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 689

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG
Sbjct: 690 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 749

Query: 340 RKGMSVFVI 348
           + G+++  +
Sbjct: 750 KSGVAITFL 758


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 187/336 (55%), Gaps = 11/336 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  +L  +           AL
Sbjct: 46  GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 100 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 160 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+ +  +      I  +   VA+   +   + ++++        A++FC+TR 
Sbjct: 220 KFMTDPIRILVKRDELTLEGI--KQFFVAVDKEEWKFDTLIDLYDTLTITQAVLFCNTRR 277

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + L
Sbjct: 278 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSL 337

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VI+ +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 373


>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 453

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 6/324 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYV  T +Q   +   +  +DVL  AQTG+GKT AFGL +   L+ E            L
Sbjct: 20  GYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPMLHRLVQEERGHV-----RGL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   L  +  +T +      GGV+++ + + L+ GA IVV  PGRL DH
Sbjct: 75  VLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKLKEGAEIVVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    +++S ++ +VLDEAD+M D+GF  D+  IL + P KR+ LMFSAT+   I  LA 
Sbjct: 135 ISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMFSATMPDDIRRLAH 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              ++ V V + S     + + +    V    +   +  +L++   ++ ++F  T+    
Sbjct: 195 EILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTESVLIFTKTKHRAK 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AARGID+  +  VI+
Sbjct: 254 RVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAARGIDVSLISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKG 342
            ++   PE   HR GRTGRA + G
Sbjct: 314 YDIPDTPEAYTHRIGRTGRAAKTG 337


>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 429

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 181/335 (54%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+  +GY   T +Q+  +   L+ KDVL  AQTG+GKT  F L +   L + +       
Sbjct: 15  AVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQRLQSSHAE-GQKR 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +           AV  GGVS++ +++ L  G  +VV TPG
Sbjct: 74  HPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQKLIKGVDVVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + +++S ++ +VLDEAD MLD+GF  DI  +L++ PKKR+ L+FSAT S  I
Sbjct: 134 RLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKRQTLLFSATFSKEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +LA  +      + +  +N     +      V    +   +   +     +  +VF  T
Sbjct: 194 KSLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKIGEENWQQVLVFTRT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++ ++ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+  L
Sbjct: 254 KHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRVLVATDIAARGIDIDKL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL +  E+ +HR GRT RAG++G +V ++
Sbjct: 314 PHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLV 348


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 58  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 112 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 172 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 232 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 292 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 352 NYDLPNNRELYIHRIGRSGRYGRKGVAI 379


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 191/346 (55%), Gaps = 5/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL ++G+   T +Q   L   L+ KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F+  + P AL +APTRELAVQ+  + E L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQPNFA-TNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    SP++
Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA         + I  E +    I       +  D+   ++ ++
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSI 355


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  TL  +           AL
Sbjct: 44  GFEKPSAIQQRAVRPVVKGRDVIAQAQSGTGKTATFSISILQTLDTQ------VRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 98  ILSPTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRKLDYGQHVVSGTPGRVFDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++FSAT+   I  +  
Sbjct: 158 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPATQVILFSATLPHEILEMTH 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 218 KFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G +RV I TDV ARGID+  + LVI
Sbjct: 278 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 338 NYDLPNNRELYIHRIGRSGRYGRKGVAI 365


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 56  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 117/329 (35%), Positives = 183/329 (55%), Gaps = 2/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L+ +DV+ +AQTG+GKT  F L +   LLA+  R   A+   AL 
Sbjct: 20  YTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPMLH-LLAQGPRVR-ANQVRALI 77

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QVG  +     +  +  AV  GGV ++ +   L+ G  I+V TPGRL D  
Sbjct: 78  LVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKLRKGVDILVATPGRLLDLH 137

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   +  + L+ +VLDEAD MLD+GF D+++ IL   P KR+ LMFSAT S  I  LAK 
Sbjct: 138 QQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQNLMFSATYSDEIRALAKT 197

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
                V + +   N   + I++    V    ++  +  +++ +  +  +VFC T+ +  R
Sbjct: 198 IVHHPVEICVNPANSTATTIEHCLYPVDKQQKNALLKKLIKDNDWQQVLVFCKTKQAADR 257

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L +      A+ G+ SQ  R+ AL   ++ + +V +ATD+AARG+D+P L  V++ 
Sbjct: 258 LVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVLVATDLAARGLDIPQLPQVVNY 317

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    ++ +HR GRTGRAG  G +V ++
Sbjct: 318 DLPHVAQDYIHRIGRTGRAGVSGQAVSLV 346


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 190/338 (56%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL ++ 
Sbjct: 10  PEIV-KALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLL-DSK 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + +      AL +APTRELA Q+   +      T + V    GG  +  + R L+ G  I
Sbjct: 68  KSATRRTARALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERALEPGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +HI  + ++I++L+ +V DEAD MLD+GF + I  I+       ++++FSA
Sbjct: 128 LVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA +  +   R+++  EN   S I +    V    +   +  ++     +  
Sbjct: 188 TSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVAARG
Sbjct: 248 LVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  VI+ ++    E+ +HR GRTGRAG+KG +V
Sbjct: 308 LDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAV 345


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E+         
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E+         
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRESQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L++G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
 gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
          Length = 500

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 192/364 (52%), Gaps = 9/364 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            IP V+  AL   G      +Q A +   L  +DVL    TGSGKT+AFGL +   L+  
Sbjct: 21  GIPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPM---LVRL 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  + P  L +APTRELA+Q+ + L+    + G+ VA  +GGV + R+   L  G 
Sbjct: 78  KGGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILARGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +  K + +  +    +DEAD M D+GF D++  ILD++PK  + L+F
Sbjct: 138 DLLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRLLF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y ++    + A      S +++  + V   D+ + + +I    G  
Sbjct: 198 SATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLLFVDRDDKRSVVAHIASRAG-- 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRARVCIATDV 303
             I+F  T+  V R  + L  HL  V   AL G  +Q  R+  L    DG   V +ATDV
Sbjct: 256 RTIMFVKTKHGVDRLAQQL--HLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGI + D+ LV+H +  +  ++ LHR+GRT RAG  G+ V ++    +   E+L ++A
Sbjct: 314 AARGIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEERDSVEKLTKQA 373

Query: 364 NVSV 367
            + V
Sbjct: 374 GIKV 377


>gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 475

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 197/351 (56%), Gaps = 10/351 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +P+ +   L++ G+V+ T +QE  L   L  KDV   AQTG+GKT AF + L 
Sbjct: 1   MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + LL +    SP      P AL +APTREL VQ+ ++ + L  + G+ +    GGV   +
Sbjct: 61  TRLLKD----SPPEGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMK 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  L+ GA +++GTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   
Sbjct: 117 QRDALREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRL 176

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   KR+ LMFSAT++  +  LA  +     +V++  E     +++      +  ++   
Sbjct: 177 PPFDKRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVIYHASRKEKFPL 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L+  + G 
Sbjct: 237 LLGLLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + IATDVA+RG+ +  +  V++ +L  + E+ +HR GRT RAG +G ++
Sbjct: 297 LPILIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAI 347


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   LL +N 
Sbjct: 10  PEIL-RAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLE-LLVKNQ 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +    P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + + +++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPRRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
              +    +E  PS++A
Sbjct: 368 IPRIETPGYEVDPSIKA 384


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/380 (33%), Positives = 201/380 (52%), Gaps = 16/380 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+S  GY   T +Q   +   L  +D++ SAQTG+GKT AF +     L   
Sbjct: 7   NLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPALERLA-- 64

Query: 66  NDRFSPAS-APLALAIAPTRELAVQVG----RELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  PA   P  L + PTRELA QV     R   +L  + G +V    GG+    + R 
Sbjct: 65  --KPGPAGIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIV----GGMPYPDQVRL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    ++V TPGRL DH+    +++S ++ +VLDEAD MLD+GF D ++ I  ++PKKR
Sbjct: 119 LRQPVDLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNIL 239
           + L+F+AT+   +  LA    KD  R+ I+S    H  I+ R  L   L  +   + ++L
Sbjct: 179 QTLLFTATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLTDNLGHKHKMLHHLL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+       + L +      AL G+++Q  R+  L  +R G+ R  +
Sbjct: 239 EDPTITQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++ FV P +     +R
Sbjct: 299 ATDVAARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAV-YLQR 357

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + R    +V     P +E +
Sbjct: 358 IQRYTGQTVQMHTIPGLEPV 377


>gi|242765545|ref|XP_002340996.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724192|gb|EED23609.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 497

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/354 (35%), Positives = 190/354 (53%), Gaps = 16/354 (4%)

Query: 4   FENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F+ +P+   ++ E L  + +   TSVQ A        +DV+  A+TGSGKT+AFGL    
Sbjct: 84  FDQLPERDNILYEPL--KNFSAPTSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLK 141

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    +  P S P A+ + PTRELA+Q+  +LE    +  V V    GGV    +R  
Sbjct: 142 NMVDSEKKLKP-SHPRAVILTPTRELAMQIYEQLEGYALRVSVKVTCIFGGVRKDEQREA 200

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N A IVV TPGRL D      +N+S +K +VLDEAD MLD GF  DI+ I+   P  R
Sbjct: 201 LKNTA-IVVATPGRLKDLESEGAINLSKVKYLVLDEADRMLDKGFEQDIKDIVSPMPVSR 259

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAI 235
           R   MF+AT   A+  LA ++ +D V V +    + + R ++ I     ++   D++N +
Sbjct: 260 RQTAMFTATWPVAVRNLANSFTQDPVMVTVGGKPSEDPRANTRIKQVVEVLDPRDKENRL 319

Query: 236 VNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             IL    R       +VFC  +    R  +++    + V  + G+LSQ +R  +L   +
Sbjct: 320 TQILGKLTRESPQGKILVFCLYKKEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLAAFK 379

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            G   + +ATDVAARG+D+P ++ V++       E+ +HR GRTGRAG  G ++
Sbjct: 380 SGDVTILVATDVAARGLDIPAVKTVVNVTFPLTIEDYVHRIGRTGRAGADGHAI 433


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S  GYV  T VQ+  L      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 196 ISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 255

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+ +E       T V   V  GGV+   + R+++ G +++ GT
Sbjct: 256 IQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGT 315

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  D+  ++ S    S ++R+ LMFS
Sbjct: 316 PGRLLDMIGRGK-VGLSKVRHLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFS 374

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K D + V +       +D++   + V   ++   ++++LR  G++
Sbjct: 375 ATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFNKREQLLDLLRTIGSE 434

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VA+
Sbjct: 435 RTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADFRSGKCPVLVATSVAS 494

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +  ++ +HR GRTGR G  G +V
Sbjct: 495 RGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAV 534


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 187/340 (55%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 208 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 267

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G ++V GT
Sbjct: 268 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVVCGT 327

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 328 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 386

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   ++++L+  G +
Sbjct: 387 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLLDLLKTTGTE 446

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 447 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 506

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 507 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 546


>gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 527

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 200/379 (52%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L    
Sbjct: 90  MPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 146

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA 
Sbjct: 147 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGAE 206

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD  +P  +RML F
Sbjct: 207 VVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 265

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+      I    G  
Sbjct: 266 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 323

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V +AT+VAA
Sbjct: 324 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVAA 383

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 384 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 443

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P V  +R  +A+
Sbjct: 444 T------PQVTQVRSGEAE 456


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 204/385 (52%), Gaps = 14/385 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY   T +Q   +   +  K VL SAQTG+GKT AF L +   L   
Sbjct: 7   NLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILDKLTKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               S    P  L ++PTRELA Q+   ++  Y++   + ++ I GG+S   + R     
Sbjct: 67  R---SEGRGPRVLIVSPTRELATQITDSIKK-YSRYLRINSITITGGISYGLQNRMFSKP 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  + K +N   L+ ++LDEAD MLD+GF  DI  I +++ KK++MLM
Sbjct: 123 IDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQQMLM 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I  +A+ +  + V ++I  +   H +I     L+  +D  +    +L  H  
Sbjct: 183 FSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQ---LIYFADNQSHKQQMLD-HFI 238

Query: 245 KN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           KN     AI+F +T+    + +  L     +  AL G++SQ  R+  +   +    ++ +
Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ ++  V + ++    E+ +HR GRTGRA  KG+++ ++    +    ++
Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R  N+ +     P +EA   ++A+
Sbjct: 359 ERFTNLKIEIASIPGMEATILKEAK 383


>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
 gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 452

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 191/371 (51%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L   LL +N   +   
Sbjct: 15  AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNDNPPQAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  I++ TP
Sbjct: 74  RPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S +  +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +   N     +     LV    +   + +++  +  +  +VF  
Sbjct: 194 IKALAGKLLTNPASVEVVRRNTPSELVTQHVHLVDKKRKRELLSHLIGQNNWRQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGEIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     V  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKRDIPRVAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 PGYEPDPSIKA 384


>gi|187960121|ref|NP_001120807.1| nucleolar RNA helicase 2 [Danio rerio]
 gi|169642686|gb|AAI60629.1| Ddx21 protein [Danio rerio]
          Length = 759

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 220/393 (55%), Gaps = 18/393 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q    N     KD++  A+TG+GKT +F + L   L + +        
Sbjct: 181 LQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEKLQSGDQERRRGRP 240

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA+QV ++ + +  K  + V    GG S + +   +++G  ++VGTPGR
Sbjct: 241 PKVLVLAPTRELAIQVTKDFKDITRK--LSVTCFYGGSSYNPQIDAIRSGIDVLVGTPGR 298

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSATI 189
           + DH++   L++S L+ VVLDE D+MLD+GF + +E IL +S KK      + L+FSAT 
Sbjct: 299 IRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATC 358

Query: 190 SPAITTLAKNYQKDA-VRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y +   + V++  +  Q   + +++ A+    S R + I ++++ Y G+ 
Sbjct: 359 PSWVYDVAKKYMRSQFIHVDLIGKKTQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSH 418

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDV 303
              IVFC T+   +  +  L   + Q   +L G++ Q++R   L+  R+G   V +AT+V
Sbjct: 419 GRTIVFCETKKEATELS--LNTSIKQSAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNV 476

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVI +   ++ E+ +HRSGRTGRAGR G+ +    +  + + + + ++A
Sbjct: 477 AARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEESQLKFVEQKA 536

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
            ++      P+   I +  ++  ++   FLDS+
Sbjct: 537 GITFKRVGVPTAYDIIQSSSKDAVR---FLDSV 566


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 178/335 (53%), Gaps = 5/335 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           AARGID+P +  VI+ +L    E+ +HR GRTG A
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGRTGIA 340


>gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 184/349 (52%), Gaps = 16/349 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A+++ G+   T +Q   L   L    D +  A TG+GKT AFG+ L   +       S  
Sbjct: 58  AMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIPLIENI------DSTV 111

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++PTRELA+QV  +L  L  K GV V    GG S   +   ++ GAHIVV TP
Sbjct: 112 KDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQIDGIKRGAHIVVATP 171

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--------DSSPKKRRMLM 184
           GRL D +  K + +  +K VVLDEADEML +GF++ +E IL        DS     R  +
Sbjct: 172 GRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQPDDSDSVRAACRTWL 231

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  L   Y ++   V++         I+     V  S +   I  +L+    
Sbjct: 232 FSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNSYKTEVIGRLLQTLPE 291

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC T+  V+    VL +  F   +L G+ SQQER   L+  +  + +V +ATDVA
Sbjct: 292 FYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKKFKQRQVKVIVATDVA 351

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
           ARG+D+ DL  V++  L  + E+ +HR GRTGR G+KG ++ ++ P+ +
Sbjct: 352 ARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVNPEQL 400


>gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 427

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L+ GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      D +     SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNDPLEYQFQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 406

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 184/326 (56%), Gaps = 8/326 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAP 82
           T +Q+  +   L  +D+L  AQTGSGKT+AFGL L         R  PAS+ +  L + P
Sbjct: 24  TRIQQLAIPAALAGQDLLALAQTGSGKTLAFGLPLLQ-------RLDPASSQVQGLVLVP 76

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA+QV   L+      G+ +    GGV+  R++ +L  G  ++V TPGRL D +  +
Sbjct: 77  TRELAIQVTAALKEGAEALGLRIVTLCGGVAQERQQAELALGPQLLVATPGRLRDLLTQQ 136

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L +  L+ +VLDEAD +L++GF  DI+ +L   P  R+ L+FSAT+   + TLA    +
Sbjct: 137 VLGLDGLQLLVLDEADRLLEMGFAPDIKALLGFIPADRQTLLFSATLPAELETLANGLLR 196

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           +  R+     N   ++I+ R  LV  S +  A++++L+       +VF S R       +
Sbjct: 197 EPTRIEANPLNSVVNEIEERLYLVNKSSKVPALISLLKEQAWPQVLVFISARDDADGVAR 256

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            LA+    V AL GE  Q  R  AL   ++G+ RV +ATD+ ARGI +  L +VI+ +L 
Sbjct: 257 KLAKAGIAVAALHGEKEQAVREQALGDFKEGKIRVLVATDLMARGIHVEALPVVINLDLP 316

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++    +HR GRT RAGR+G+++ ++
Sbjct: 317 ASAPVYVHRIGRTARAGREGLAISLV 342


>gi|284992766|ref|YP_003411320.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284066011|gb|ADB76949.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 508

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/378 (35%), Positives = 194/378 (51%), Gaps = 10/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ +  AL  RG  +  ++Q + L   L  +DVL  A TGSGKT+AFGL + + L  E
Sbjct: 33  GLPQQLVTALERRGIRHPFAIQASALPDALAGRDVLGKAATGSGKTLAFGLPMLARL-GE 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  AP AL + PTRELA QV   L  L    GV +    GG S++R+ + L+ G 
Sbjct: 92  TARRGP-RAPRALVLVPTRELAQQVFDNLAPLGQSIGVQLTTVYGGASMYRQIQQLRRGV 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             V+ TPGRL D I    + +  +   V+DEAD M DLGF   ++ +LD +    + L+F
Sbjct: 151 DAVIATPGRLQDLISQGEVTLDEVSVTVIDEADFMSDLGFLPVVQELLDQTRPDAQRLLF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + Y KD  R  +          ++ A  +A  D+      +    G  
Sbjct: 211 SATLDGEVDTLVRRYLKDPARHEVKRAGDDAPPAEHLAYSLAFRDKVPVTEQLAARPG-- 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    R    L     +  A+ G L Q  R  AL+   D R+ V +ATDVAA
Sbjct: 269 RTLIFVRTQLGADRLAGNLQAAGIKAEAIHGGLPQGARRRALEEFTDARSPVLVATDVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  ++ +  LHRSGRT RAG  G+ V ++  +   +A+R FR+A +
Sbjct: 329 RGIHVDDVSLVLHYDPPADHKTYLHRSGRTARAGAGGVVVSLLLPDQVGQAKRRFRQAKI 388

Query: 366 SVVWEPAPSVEAIRERDA 383
                  P V  +R  DA
Sbjct: 389 E------PEVSRVRPGDA 400


>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 402

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 191/373 (51%), Gaps = 6/373 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF
Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSV 367
            +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +
Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371

Query: 368 V---WEPAPSVEA 377
               +EP PS++A
Sbjct: 372 TTPGYEPDPSIKA 384


>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 571

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 186/353 (52%), Gaps = 7/353 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L L 
Sbjct: 1   MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60

Query: 60  STLLAE----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             L  E    N R    +A  AL + PTRELA QV   +        +   V  GGV + 
Sbjct: 61  QRLSTEPRLTNRRG--VNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMG 118

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  I+V TPGRL DH     L++S ++ ++LDEAD MLD+GF  DI+ +L  
Sbjct: 119 AQIEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLAL 178

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK+++ L+FSAT S  I  LA    ++ + + +   N     I      V  S +   +
Sbjct: 179 VPKQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKALL 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I+  H     +VF  T+   +   + L +     +AL G  SQ  R+ ALQ  ++G  
Sbjct: 239 THIINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDI 298

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLV 351


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A ++     
Sbjct: 34  EALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEGSD-- 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL +QV ++L+      GV V    GGV+   +   L+ G  I+VGTP
Sbjct: 92  GVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEILVGTP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT+   
Sbjct: 152 GRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSATMPDP 211

Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           I  L++ + +  V ++         + Q + + YR   +   ++   +  IL+  G    
Sbjct: 212 IVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSL---NKVEIVARILQAEGRGLT 268

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAARG
Sbjct: 269 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 328

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+  +  VI+ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 329 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 376


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A ++     
Sbjct: 34  EALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEGSD-- 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL +QV ++L+      GV V    GGV+   +   L+ G  I+VGTP
Sbjct: 92  GVPQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEILVGTP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT+   
Sbjct: 152 GRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSATMPDP 211

Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           I  L++ + +  V ++         + Q + + YR   +   ++   +  IL+  G    
Sbjct: 212 IVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSL---NKVEIVARILQAEGRGLT 268

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAARG
Sbjct: 269 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 328

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+  +  VI+ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 329 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 376


>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
 gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
          Length = 604

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 271/558 (48%), Gaps = 39/558 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + + + + GY   + +Q A +   +  +DV+  AQTG+GKT AF L + + +   
Sbjct: 16  NLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPILAKIK-- 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
               S +  P AL + PTRELA+QV    +   A      V    GG  +  + R LQ G
Sbjct: 74  ----SGSKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGLQRG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGRL DH+  + L++S L  VVLDEADEML +GF +D+E IL  +P   ++ +
Sbjct: 130 VQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQIAL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  +A  Y K+ V V I +    + +I+    LV+ +++  A+  IL     
Sbjct: 190 FSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSGTNKLEALTRILEVEDF 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+ S     + L    F    L+G+++Q  R   ++ ++ G+  + IATDVA
Sbjct: 250 EGMIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMIIATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFR 361
           ARG+D+  +  V++ ++  + E  +HR GRTGR GR G ++ FV P+   M R  E+  R
Sbjct: 310 ARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRSIEKTTR 369

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HD----PEK 415
           +    +     PS + +  R  Q         DSI  + K     ++A+  H+    PE 
Sbjct: 370 Q---KITEMQLPSRQDLIHRRTQEF--KAAVTDSINMENKSFFQRIIAEMCHEQEISPED 424

Query: 416 IAA--GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW----- 468
           +AA   +L      L  P+   P S    R++   +    +   G   N   +       
Sbjct: 425 VAAALAYLLQKDRPLLPPKGKEP-SERPEREKREREFTPERSKKGELPNLGNAQSLRDYP 483

Query: 469 ------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD--- 519
                 F L VG       R ++  +   + I+   IG I++  D + V++ A   D   
Sbjct: 484 EIVMERFRLDVGRNHNVSPREIVGAIANEADIDSCYIGQIKIFDDFSTVDLPAGMPDELF 543

Query: 520 -LLRRTVKLDKGIQLKYL 536
            +L++T  + + I LK L
Sbjct: 544 QMLKKTRVMQRPINLKRL 561


>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
 gi|143462316|sp|Q0UK12|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
          Length = 546

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/381 (34%), Positives = 201/381 (52%), Gaps = 13/381 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A    GY   T +Q   +   L  KD++  A+TGSGKT AF L +   LL +       
Sbjct: 128 DACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDK------P 181

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A   L +APTRELA Q+ ++++ L +   V  A  +GG+ +  +   L    HI+V +P
Sbjct: 182 QAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASP 241

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           GRL DH+   KG ++ HLK +VLDEAD +LDL F D ++ I    P+  R   +FSAT+S
Sbjct: 242 GRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMS 301

Query: 191 PAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             + +L +   K+ VRV+I+S + Q  S +    +L+    +D  ++++L  +     I+
Sbjct: 302 SKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLIHLLNDNIGHATIL 361

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T     R   +L    FQ + L G+LSQ  R  AL   +     + +ATDVAARG+D
Sbjct: 362 FTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLD 421

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRRAERLFREANV 365
           +P ++LV++ +L  + E  +HR GRT RAG+ G +V  + Q      QR    L ++   
Sbjct: 422 IPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIFQRIEHALGKQVPE 481

Query: 366 SVVWEPAPSVEAIRERDAQRI 386
             V      V A R  +AQR+
Sbjct: 482 EKVSRDEVMVYAERVGEAQRV 502


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E+         
Sbjct: 43  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 94

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 95  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 153

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 154 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 213

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 214 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 273

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 274 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 333

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 334 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 364


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 190/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVECQAL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPA 408


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F    L +  T++ E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|301510878|ref|ZP_07236115.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB058]
          Length = 344

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 191/338 (56%), Gaps = 8/338 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           ATDVA RGI +  +  V++  L    ++ +HR GRTGR
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 192/369 (52%), Gaps = 32/369 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    + E
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL-VKIEE 455

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D+      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G 
Sbjct: 456 SDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 510

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P        
Sbjct: 511 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 570

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  +
Sbjct: 571 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 630

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +  L++ S++   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 631 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 690

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG
Sbjct: 691 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 750

Query: 340 RKGMSVFVI 348
           + G+++  +
Sbjct: 751 KSGVAITFL 759


>gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 500

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/382 (33%), Positives = 202/382 (52%), Gaps = 13/382 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF +     L  E  R  
Sbjct: 19  ILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERL--ELSRRE 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P     AL + PTRELA+QV    +  YA+      V    GG S+  + R L+ GAH++
Sbjct: 77  PQ----ALVLVPTRELAIQVAEAFQS-YARHLEDFHVLPIYGGQSMGNQLRQLKRGAHVI 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R K L ++ L  V+LDEADEML +GF +D+E+IL   P KR++ +FSAT
Sbjct: 132 VGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  ++  +A  +      + I  +      I+ R  LV+   + +A+  +L        I
Sbjct: 192 MPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLHKLDALTRMLEAEEYDATI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +     K L    +   AL+G++ Q  R   +  ++     + +ATDVAARG+
Sbjct: 252 IFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDIIVATDVAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQRRAERLFREANVSV 367
           D+  +  V++ ++  +    +HR GRTGRAGR G  ++FV P+  +RR     + A    
Sbjct: 312 DVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPR--ERRMLSAIKRATGQP 369

Query: 368 VWE-PAPSVEAIRERDAQRILQ 388
           ++E   PS + + +R  +R  Q
Sbjct: 370 LYEMQLPSHQQVIDRRIERFKQ 391


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 193/336 (57%), Gaps = 7/336 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY   + +Q   +   L  +DV+  AQTG+GKT AF L + S +   +      +
Sbjct: 32  ALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILSRIDVRS------T 85

Query: 74  APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  AL +APTREL +QV      + +   G+ V    GG +   +   ++ GA +VVGTP
Sbjct: 86  STQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIRRGAQVVVGTP 145

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+    L++  L+ +VLDEADEML +GF+++++ IL  +P  +++ +FSAT+   
Sbjct: 146 GRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALFSATMPAP 205

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +++ Y +D V + + +     ++   R + VA   + +A+  +L     +  I+F  
Sbjct: 206 IRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFEAMIIFVR 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+++     + L    F   A++G+L Q +R   +  +RDG   + +ATDVAARG+D+  
Sbjct: 266 TKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAARGLDVER 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++
Sbjct: 326 VTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLV 361


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E+         
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 198/356 (55%), Gaps = 6/356 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L   LL  
Sbjct: 10  NLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLHKLLNT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P  A + + + PTRELA QV    E     + V  A+  GG S+  + + L+  A
Sbjct: 70  PKKDEPGIARVVI-LTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQIKALKT-A 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I+ IL   P  R+ L+F
Sbjct: 128 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHG 243
           SAT   ++  L++   K+   + +  + R  + ++   ++ A+  DR   +V +++    
Sbjct: 188 SATFDDSVFGLSEKLLKNPELIEV--DKRNSAAVEVEQIIYAVDEDRKRELVSHMIGMKN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +ATDV
Sbjct: 246 WRQVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARG+D+P L+ VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E +
Sbjct: 306 AARGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEI 361


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F    L +  T++ E          
Sbjct: 129 GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQ-------- 180

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 181 -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 239

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 240 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 299

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 300 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 359

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 360 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 419

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 420 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 450


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 193/347 (55%), Gaps = 11/347 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I EA     +   T +Q   + P L  +D++  AQTGSGKT AF + + + L  + 
Sbjct: 80  VPELI-EACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWEDK 138

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       A  +APTRELA Q     + L A  GV     +GG+++  + R+L    H
Sbjct: 139 QPY------YACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKPH 192

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLM 184
           I++ TPGRL DH+   KG ++  L+ +V+DEAD +LD+ F   ++ IL   P + R   +
Sbjct: 193 IIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTYL 252

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHG 243
           FSAT++  I  L +    + V+  + S   Q  D   + ++V  S   N  ++ +L  + 
Sbjct: 253 FSATMTSKIDKLQRASLTEPVKCAV-SNKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENI 311

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F  T+A+  R + +     F   AL G+L+Q +R+ AL + + GR  + +ATDV
Sbjct: 312 GKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDV 371

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 372 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 418


>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 453

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQLHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A
 gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
          Length = 627

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 183/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 189 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 248

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 249 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 308

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 309 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 368

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 369 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 428

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 429 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 487

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 488 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 540


>gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 427

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L++GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      + +   + SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
          Length = 462

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 194/341 (56%), Gaps = 11/341 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++S  G+   T++Q  +L   L+ +D++  A+TGSGKT AFGL +   LL    RF    
Sbjct: 47  SVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQQLLQRTQRF---- 102

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL +Q+ +++  +    GV V   +GG+  + +   L    H+VVG+PG
Sbjct: 103 --YALILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPG 160

Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATIS 190
           R+ DH++  KG ++  +K +VLDEAD +L L F   ++ +L+   SP +R+ ++FSAT++
Sbjct: 161 RVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMT 220

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             ++ L K   K  V++ + S+    S +    +LV    +   +   L +    + IVF
Sbjct: 221 TKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAAALLHLSPSSVIVF 280

Query: 251 CSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
            +T A+ +R   +   HL FQ V L G+++Q +R  AL   R       +AT+V +RG+D
Sbjct: 281 TNTCAN-ARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEVGSRGLD 339

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q
Sbjct: 340 IPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQ 380


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 179/327 (54%), Gaps = 5/327 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q+  +   + ++D++  AQTGSGKT AF L + +TLL +N    P + P  + 
Sbjct: 235 YTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMINTLLNDNADMVPGN-PFVVI 293

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           IAPTRELA+Q+  E       T + V V  GG +   +  ++QNG HI+V TPGRL D +
Sbjct: 294 IAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQMDNIQNGCHILVATPGRLLDFV 353

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RRMLMFSATISPAITT 195
             + +    +K VVLDEAD MLD+GF   +E +++     PK+ R+ LMFSAT    I  
Sbjct: 354 DKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHETMRPKEERQTLMFSATFPAEIQE 413

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA  +  + + V +       +D++     V+   +   +  +L        +VF  T+ 
Sbjct: 414 LAGQFLNNYIFVAVGIVGGASTDVEQTIHQVSKFQKRKKLEELLEADDPTGTLVFVETKR 473

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +      +L+E  F   ++ G+  Q+ER  AL+  + G+  + IAT VAARG+D+ ++  
Sbjct: 474 NADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGKMFILIATSVAARGLDIKNVAH 533

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKG 342
           V++ +L  + ++ +HR GRTGR G KG
Sbjct: 534 VVNYDLPKSIDDYVHRIGRTGRVGNKG 560


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 184/325 (56%), Gaps = 11/325 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P +R +DV+  AQ+G+GKT  F +++  ++   N R + A     L ++PT
Sbjct: 47  SAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSI-DTNLRETQA-----LVLSPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQ+   +  L     V    CIGG SV  + R L+ G  +V GTPGR+ D IR + 
Sbjct: 101 RELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRN 160

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K ++LDE+DE+L+ GF+D I  I    P   ++++ SAT+   +  +   +  D
Sbjct: 161 LRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTD 220

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            VR+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V   
Sbjct: 221 PVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ + E  F V ++ GE+ Q+ER   +   R G++RV I TDV ARGID+  + LVI+ +
Sbjct: 279 TEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYD 338

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L ++ EN LHR GR+GR GRKG+++
Sbjct: 339 LPTSRENYLHRIGRSGRFGRKGVAI 363


>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
 gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
          Length = 436

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 190/337 (56%), Gaps = 8/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL+ +G    T VQE  + P +R  +D +V AQTG+GKT+AF L L   +         
Sbjct: 4   DALARQGIREATLVQEQAI-PAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGN------ 56

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A    AL ++PTRELA+Q  R  + L    G+  A+  GG  + R++  L+    +++ T
Sbjct: 57  ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQKPQLIIAT 116

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   + +S +  +VLDEADE++ LGF +D+E +L++     ++++FSAT+  
Sbjct: 117 PGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMPE 176

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L + Y K+   + +  E    ++I+   V      + + +  +L  +    A+VFC
Sbjct: 177 RIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQPYLAMVFC 236

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V+  T  LA   + V  L G+L+Q +R+  ++  R+ + ++ + TD+AARG+D+ 
Sbjct: 237 HTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDIE 296

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  V + +L  + E  +HR GRTGRAG KG++V  +
Sbjct: 297 GVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFV 333


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 7/339 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P  I   +S  GY   T +Q+  + P +   DV+  AQTG+GKT AF L +   L+
Sbjct: 6   FEFHP-TIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPILHRLM 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                        AL IAPTRELA Q+   +  L AKTG+      GGVSV+ +   L+ 
Sbjct: 65  EGKQ-----GTVRALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIERLRR 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  DI  +L   P +R+ L
Sbjct: 120 GVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQRQTL 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA +  +  + V  A        + +    V+   +   ++ +LR+  
Sbjct: 180 LFSATMPDDIRRLASDILRQPITVQ-AGSTAPPVTVSHALYPVSQHLKTPLLLELLRHTD 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+
Sbjct: 239 TESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVATDI 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARGID+  +  V++ ++    E  +HR GRTGRA R G
Sbjct: 299 AARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSG 337


>gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 132/348 (37%), Positives = 188/348 (54%), Gaps = 12/348 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---L 63
           +P ++  A +  G +  T +Q   +   LR  DVL +A+TGSGKT AF L L   L   L
Sbjct: 9   LPALVSAAQAH-GLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLLQRLQPCL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
            E  R + A     L + PTRELA+QVG  LE L  +      + +  GGVS++ +   L
Sbjct: 68  GEWRRRTQA-----LVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQMMAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + GA +VV TPGRL D +    L I  L  +VLDEAD +LDLGF D++  I    P +R 
Sbjct: 123 RGGAEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPPRRF 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT    +  LA  +  + VR+ + ++  +  DI  RA+ V  + R   +  +L 
Sbjct: 183 QHLFFSATFPEEVQALADEWLHEPVRIELQADAAETPDITQRAIEVDATRRTPLLRKLLA 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G + A+VF +TR +       L     +  AL GELSQ  R+ AL   R    +V +A
Sbjct: 243 EPGWEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQRELQVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARGID+  L +V++ +L  + ++  HR GRTGRAG  G +V  I
Sbjct: 303 TDVAARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFI 350


>gi|29829640|ref|NP_824274.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606748|dbj|BAC70809.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 759

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 176/320 (55%), Gaps = 10/320 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL L   +    D    R  P     AP AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPEQLTDAPQALVVVPTRELCTQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L        V V    GG +   +   L+ G  ++VGTPGRL D    K L++ H+KA
Sbjct: 71  NDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLKHIKA 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I++  P +R+ ++FSAT+  A+  LA+ Y      +   +
Sbjct: 131 LVLDEADEMLDLGFLPDVEKIINMLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATA 190

Query: 212 ENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
            + + + +   A  +  +   D+   +  IL+  G   A+VFC T+ + +     L +  
Sbjct: 191 PDDEGATVRNTAQFIYRAHNMDKPEMVSRILQADGRGLAMVFCRTKRTAADLADQLQQRG 250

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + +  
Sbjct: 251 FASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTY 310

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           LHR GRTGRAG KG+++ ++
Sbjct: 311 LHRIGRTGRAGAKGIAITLV 330


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/363 (34%), Positives = 189/363 (52%), Gaps = 15/363 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F  +P    + +A+ + GY  LT +Q  IL   L  +D +  AQTG+GKT  F L +
Sbjct: 2   FQTFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTI 61

Query: 59  ASTLL-------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + LL        + DRF   +   AL +APTRELA Q+ ++   L   T +     +GG
Sbjct: 62  INELLNNPLNPEIDGDRFLGETR--ALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGG 119

Query: 112 VSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
                + + L Q    I++ TPGRL D      + +  L+ +VLDEAD MLD+GF  DI+
Sbjct: 120 TDYETQSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIK 179

Query: 171 FILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            ++   P    R+ L+FSAT +  +  LA  +    + V IA E +    I+     +  
Sbjct: 180 RLIRMMPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLME 239

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           SD+  A+  I+     K  IVF + +  V R    L    ++VV LSG++ Q +R   L 
Sbjct: 240 SDKLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQ-YKVVILSGDVIQAKREKYLA 298

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G A + +ATDVA RGI + D+  V++  L  +P++ +HR GRTGRAG KGMS+  I
Sbjct: 299 QFRQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFI 358

Query: 349 PQN 351
            +N
Sbjct: 359 SEN 361


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 182/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 15  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 69  ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 128

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 129 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 188

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 189 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 248

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 249 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 308

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 309 NYDLPNNRELYIHRIGRSGRYGRKGVAI 336


>gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
 gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
          Length = 427

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 1/341 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIVQNIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++D+ +      A+ + PTRELA QV   ++     T +      GG  +  +++ L+ G
Sbjct: 65  DSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +HI    +++++L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA    +   RV++A EN     I +    V    +   +  ++     
Sbjct: 185 FSATFSTQMNKLASEILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV IATDVA
Sbjct: 245 KQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345


>gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
 gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
          Length = 463

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 205/391 (52%), Gaps = 17/391 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   + +A++  G+   T +Q   L   L  +D++  AQTG+GKT AF +    T+L  
Sbjct: 48  NLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQTMLET 107

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++ RF  AS P  LA+APTRELA+Q+ ++ E L A TG  V   +GG+   ++R  L
Sbjct: 108 PIEDSKRF--ASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRDQL 165

Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179
           QN    I+V TPGRL D +  + + +  +  ++LDEAD MLD+GF  D++ I+   +PK+
Sbjct: 166 QNEVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTPKE 225

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT +  +  LA  + + A  V I  E +    ++    LV   ++   +VN 
Sbjct: 226 DRQTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLVNY 285

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF + R       + L      V  +SGE++Q +R   L+  + G  +V 
Sbjct: 286 LKRPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQVL 345

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           +ATDVA RGI +  +  V +  L  N E+ +HR GRTGRAG  G+S+        F +P 
Sbjct: 346 VATDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDSFALPA 405

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRER 381
             +   ++L  E     +  P  +    R+R
Sbjct: 406 IEKYIGQKLANEVPDEALMVPMDNAPIARKR 436


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 185/342 (54%), Gaps = 7/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L   G    T +Q+  +   L  KDV+  AQTG+GKT+AF L +   + A+     
Sbjct: 13  LNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILEKIDAKKSYIQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+  E++ L +K    V    GG  V R+ + LQ   HIV+ 
Sbjct: 73  ------ALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQGNTHIVIA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+    + ++ +  +VLDEAD+ML +GF +++E I+  +  KR+ ++FSAT+ 
Sbjct: 127 TPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTMLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L+  Y +  + +++             AV      +   +  +L  +     I+F
Sbjct: 187 AEIRALSVKYMRKPMDIHVRGTGITLEKTKQIAVETTDRTKQETLRKLLDEYQPYLGIIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+   S   ++L  H +    L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D+
Sbjct: 247 CRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVATDVAARGLDV 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             +  V + ++  + E+ +HR GRTGRAG  G++V FV P++
Sbjct: 307 EGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRD 348


>gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
          Length = 454

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/366 (35%), Positives = 196/366 (53%), Gaps = 10/366 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K FE+    PQ++  A++++GY   T +Q   L   L   D++  A+TGSGKT AF L 
Sbjct: 224 IKTFEDCGFSPQLM-NAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLP 282

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S   +
Sbjct: 283 MIVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQ 341

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L+ G  IV+ TPGRL D ++ K LN+S    +VLDEAD M DLGF   I  I+    
Sbjct: 342 FKELKAGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIR 401

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+   I  LA+    D VRV +    R + DI  + V V  SD +     
Sbjct: 402 PDRQTLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDI-TQVVQVIPSDAEKLPWL 460

Query: 238 ILRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I +  G     + +VF S +A+V      LA+  F+V AL G+  Q  R   LQ  + G 
Sbjct: 461 IEKLPGMIDEGDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGV 520

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQ 353
             V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG K G++  +I Q   
Sbjct: 521 YHVLVATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEA 580

Query: 354 RRAERL 359
           R A  L
Sbjct: 581 RFAGEL 586


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +   G+   T +Q       +  K+++  AQTGSGKT+ + L  A   +  
Sbjct: 108 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLP-AVVHINN 166

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            +       P+AL +APTRELA Q+ +++  L+ ++  + + CI GG     + RDL NG
Sbjct: 167 QEPLKKGDGPIALVLAPTRELAQQI-QKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNG 225

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM
Sbjct: 226 VEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 285

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++N+ S     + +I     +    ++++ ++++L+   
Sbjct: 286 WSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIA 345

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V   T+ +     + V + G+ SQ ER + L+  R GRA + +A
Sbjct: 346 NMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVA 405

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ +KG S      +  ++A+ L 
Sbjct: 406 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLV 465

Query: 360 --FREAN 364
               EAN
Sbjct: 466 AVLTEAN 472


>gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 427

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 194/377 (51%), Gaps = 4/377 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L         A  
Sbjct: 24  LTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83

Query: 75  PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV    L +     G + +    GGVSV+ + + L+ GA ++V TP
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SAT    
Sbjct: 144 GRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEE 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L        +  ++ SE  Q S I+ R + V    +   + ++++ H    A++F S
Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARGID+  
Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARGIDIDK 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +V E  
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLVREQI 381

Query: 373 PSVEAIRERDAQRILQD 389
           P  EA  E   + + Q+
Sbjct: 382 PGFEANAEMPLEVLAQE 398


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLVQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLFDIQKFYNVVV--EELPS 406


>gi|325676737|ref|ZP_08156410.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552285|gb|EGD21974.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 712

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/390 (32%), Positives = 200/390 (51%), Gaps = 19/390 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ +  AL+ R  + + S  +A+  PD +  K++L  AQTGSGKT+AFGL + + L   
Sbjct: 53  LPEPVVAALA-RNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARH 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G 
Sbjct: 112 EDRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGV 170

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 171 DILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLF 230

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + +  +    +        + +D+  +LV   D+D  +  I    G +
Sbjct: 231 SATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAVLAEIASREGGR 290

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+      T+ L E      AL G  +Q +R+  L+  + GR  V +ATDVAA
Sbjct: 291 -TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAA 349

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV+H +   + ++ LHR+GRT RAG  G+   ++  N +R   RL   A V
Sbjct: 350 RGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGV 409

Query: 366 SVVWEP---------------APSVEAIRE 380
           +    P               APS E +R+
Sbjct: 410 NATAVPVFPGSEELATITGAQAPSGEPVRD 439


>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 681

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 230/431 (53%), Gaps = 34/431 (7%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q    +  +  KD++  A+TG GKT+AF L +   LL +    +   A
Sbjct: 121 LQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFALPVIELLLQDKRPRARGRA 180

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCI-GGVSVHRERRDLQNGAHIVVGTP 132
           P  + +APTRELA QV  E E     TG  ++ VCI GG S   +    ++G  I+VGT 
Sbjct: 181 PRVVCMAPTRELAKQVATEFEL----TGPSLSTVCIYGGASYQSQNNAFRSGVDILVGTT 236

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------DSSPKKRRMLMF 185
           GR+ DHI    L + + + ++LDEAD ML++GFR+D++ +        + S  KR+ L+F
Sbjct: 237 GRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQVKNESTGKRQTLLF 296

Query: 186 SATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SATI   +  +A  Y K A  VN+   S+++  +D+ + A+      R   + N+L  + 
Sbjct: 297 SATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLANLLGVYA 356

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K++  I+F  T+   +    V  E       L G+++Q++R   ++  R+GR R+ IAT
Sbjct: 357 KKDSRTIIFAETKKDCNELA-VHPEIKTDCQVLHGDIAQEQRETTMKAFREGRLRLLIAT 415

Query: 302 DVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           DVAARG+D+ +++LVI++E        ++ +  +HRSGRTGRAG+KG+ + +     + +
Sbjct: 416 DVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYTNRQRDQ 474

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEKKMVDVLLAK 410
             ++ R+     + +  P  E + +  A + L+     DP  ++  Q   +++++ +   
Sbjct: 475 LNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKARELLETM--- 531

Query: 411 HDPEKIAAGFL 421
            +PEK  A  L
Sbjct: 532 -EPEKCLAAAL 541


>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
 gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
          Length = 448

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 9/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+  N 
Sbjct: 10  PEIL-RAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT-NQ 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +  P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
              +    +EP PS++A
Sbjct: 368 IPRIATPGYEPDPSIKA 384


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++   +  +         P AL
Sbjct: 53  GFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ------LREPQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G HIV GTPGR+ D 
Sbjct: 107 VLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 167 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 227 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 286

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G++RV I+TDV ARG+D+  + LVI
Sbjct: 287 DWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVI 346

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 347 NYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 56  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 109

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 110 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 229

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 230 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 289

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 290 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 350 NYDLPNNRELYIHRIGRSGRYGRKGVAI 377


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 200/377 (53%), Gaps = 12/377 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +   GY+  T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 111 IQYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 169

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R S    P+ L +APTRELA Q+ +E+   + +   V   CI GG     +
Sbjct: 170 AIVHIIHQPRISSGDGPIVLILAPTRELAQQI-QEVANSFGEMAAVRNTCIFGGAPKGPQ 228

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 229 AHDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 288

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D + +NI S     + +I     +    ++D  + 
Sbjct: 289 PDRQVLMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKDLKLY 348

Query: 237 NILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +L+  G +     I+F  T+  V   TK +    +Q V++ G+ +QQER + LQ  R+G
Sbjct: 349 RLLQEIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNG 408

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           +A + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM
Sbjct: 409 KAPILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNM 468

Query: 353 QRRAE--RLFREANVSV 367
           +   +   + REA  +V
Sbjct: 469 KHAGDLIEVLREAGQNV 485



 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 8/354 (2%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 712  FPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHINHQ 770

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
             R S    P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 771  PRLSRNDGPIALILAPTRELAQQI-QQVASDFGMSSQVRNTCIFGGAPKGPQARDLERGV 829

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 830  EICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMW 889

Query: 186  SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
            SAT    +  LA+ +  D +++NI S +   + +I     +    ++++ ++ +L     
Sbjct: 890  SATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEEISN 949

Query: 242  HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                  I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ + +AT
Sbjct: 950  EPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVAT 1009

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  +
Sbjct: 1010 DVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHK 1063


>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 443

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 200/361 (55%), Gaps = 9/361 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-ARD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +        A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKALRKYPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPAI 193
           L DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193

Query: 194 TTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
                N   DA  R+++   N QH DI  +  L    D   AI++ +L     +  ++F 
Sbjct: 194 VNDIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVLEEAEYRQVMIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+P
Sbjct: 254 ATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ--RRAE-RLFREANVSV 367
           ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++ +  +R E  L ++ N SV
Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWESFKRVELYLQQDLNFSV 373

Query: 368 V 368
           +
Sbjct: 374 L 374


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/346 (36%), Positives = 183/346 (52%), Gaps = 8/346 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+E G     ++QE  L   L   D++  A+TG GKT  FG+ L   +   +   +
Sbjct: 52  IVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLHRVSTADSGTT 111

Query: 71  PASA-PLALAIAPTRELAVQVGRELEWL--YAKTG---VVVAVCIGGVSVHRERRDLQNG 124
           P    P AL I PTREL VQV ++LE    Y K+G   + V    GG    ++   L+ G
Sbjct: 112 PLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPYEQQIDALRKG 171

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D      L +  +  +VLDEADEMLDLGF  DIE IL   P KR+ ++
Sbjct: 172 VDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPDKRQTML 231

Query: 185 FSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT+   I TLA+ +  Q   +R   A  +  H             D+   +  +L+  
Sbjct: 232 FSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIYRAHALDKAEMVARVLQAD 291

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+ +  +    L E  F V A+ G+L Q  R  AL   R G+  V +ATD
Sbjct: 292 GRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFRSGKVDVLVATD 351

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ ++
Sbjct: 352 VAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLV 397


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 185/345 (53%), Gaps = 8/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +    GGVS             +VV TP
Sbjct: 75  GPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFSTNQDMVVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +++ L+FSAT+ S 
Sbjct: 135 GRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQTLLFSATLESD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           A+   A    +D V V+     R+   I    YRA   +L  +   + ++LR      ++
Sbjct: 195 AVHDFADRLLEDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCHLLRQPDVTKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +   Q   L GEL Q +R+ A++ M DGR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I  + Q
Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQ 357


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 184/325 (56%), Gaps = 11/325 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P +R +DV+  AQ+G+GKT  F +++  ++   N R + A     L ++PT
Sbjct: 47  SAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSI-DTNLRETQA-----LVLSPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQ+   +  L     V    CIGG SV  + R L+ G  +V GTPGR+ D IR + 
Sbjct: 101 RELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRN 160

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K ++LDE+DE+L+ GF+D I  I    P   ++++ SAT+   +  +   +  D
Sbjct: 161 LRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVVSATLPHDVLEMTTKFMTD 220

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            VR+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V   
Sbjct: 221 PVRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ + E  F V ++ GE+ Q+ER   +   R G++RV I TDV ARGID+  + LVI+ +
Sbjct: 279 TEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLITTDVWARGIDVQQVSLVINYD 338

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L ++ EN LHR GR+GR GRKG+++
Sbjct: 339 LPTSRENYLHRIGRSGRFGRKGVAI 363


>gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
          Length = 441

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT+S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATLSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
          Length = 439

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L   TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLNKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 432

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 203/351 (57%), Gaps = 13/351 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +   LL   
Sbjct: 17  IPEVL-KVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPMVQHLLNVK 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         + I PTRELA QV   ++ +  A  G+   + +GG+ V ++   L    
Sbjct: 76  EK---NRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQSVQLAKRP 132

Query: 126 HIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            ++VGTPGR+  HI+  KG+  +I  +K +V+DEAD++L++ F ++I+++++  PK+R  
Sbjct: 133 QVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIEKLPKQRTT 192

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNIL 239
           ++FSAT+S  +  L +      V+  I  E +++  +D        +    RD  +++IL
Sbjct: 193 MLFSATMSTKVEKLQRASLTHPVK--IKEEEQKYQTVDTLRQEYCFIPFKYRDGYLISIL 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K  I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G+  + +
Sbjct: 251 KETEGKTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSGKRGILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q
Sbjct: 311 ATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQ 361


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 193/372 (51%), Gaps = 13/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E
Sbjct: 46  NLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQLDYE 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL +APTRELA Q+ + +  L     V    C+GG SV  ++R LQ+G 
Sbjct: 106 KEECQ------ALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L   ++K   LDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVVVGTPGRVYDMLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   + + + + ++      
Sbjct: 220 SATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++     ERL ++  
Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD----DERLLQDVQ 395

Query: 365 --VSVVWEPAPS 374
                V E  PS
Sbjct: 396 RFYQTVIEELPS 407


>gi|154345774|ref|XP_001568824.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 527

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 202/377 (53%), Gaps = 12/377 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A +E G+ + T +Q + +      +D++  AQTGSGKT A+ L L + LL +     P +
Sbjct: 67  ACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPLVNWLLTQ-----PKT 121

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             L+ L + PTRELA QV  +   L    G+ VA  +GG  +  +  +L    H++VGTP
Sbjct: 122 PYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQACELSKRPHVIVGTP 181

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR+ DH+   KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+ RR ++FSAT+S 
Sbjct: 182 GRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQDRRTMLFSATLST 241

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L K   +D V + +  +N     +    +    +   + +   L      + ++FC
Sbjct: 242 KVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLFLTKETGNHILIFC 301

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            + A V R T  L     + + L G + Q  R+ AL   ++G+ R+ I TDVA RG+D+P
Sbjct: 302 RSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKVRMLICTDVAQRGLDIP 361

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
             ++V++  L  + E+ +HR GRT RAG +G +V +I Q      +++ ++  V  V  P
Sbjct: 362 HTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQKIEQQTGVKCVEYP 421

Query: 372 APSVEAIRERDAQRILQ 388
                ++ E + Q +LQ
Sbjct: 422 -----SLPESEVQLVLQ 433


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F + L   L  E  + + A+
Sbjct: 15  ALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPKVA-AN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 74  SVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMKLRKGVDLLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L  + L+ +VLDEAD MLDLGF +++  I  + PKKR+ L+FSAT S AI
Sbjct: 134 RLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKRQTLLFSATFSDAI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   + +    V V    +    V+++R +  +  +VF  T
Sbjct: 194 RLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWRQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIEDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            LV++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLV 348


>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 455

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 193/346 (55%), Gaps = 9/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67
           +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +   LL     +E  
Sbjct: 22  KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81

Query: 68  RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+   ++   L    H
Sbjct: 82  KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH 141

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  IL+  P++R+  +F
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPRERKTFLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V++  AS+      +  +   VA   +D  +V IL      
Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++F  T    +RF  ++   L F+ + +SG+++Q +R  AL   + G   + + TDVA
Sbjct: 262 TSMIFTRT-CDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVA 320

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/375 (34%), Positives = 198/375 (52%), Gaps = 16/375 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q+  +   L   D+L SAQTG+GKT  F L +   L+    R     
Sbjct: 16  AINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQKLIT-TPRSGKDR 74

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++       +   V  GGVS++ +   L+ G  I++ TP
Sbjct: 75  KPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLRGGVDILIATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++  VLDEAD MLD+GF  DI  +++  PKKR+ L+FSAT S  
Sbjct: 135 GRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPKKRQNLLFSATFSDE 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V + +A  N     +     LV    +   +  ++     +  +VF  
Sbjct: 195 IKQLANKLLNNPVTIEVAPRNSASEQVAQYVHLVDKKRKAELLSFMIGRENWQQVLVFTR 254

Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T+   +R    LAEHL     +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+
Sbjct: 255 TKHGANR----LAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANV 365
           D+  L  V++ EL +  E+ +HR GRTGRA   GM+V ++      + +  E+L +++  
Sbjct: 311 DIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKDIEKLLKKSIP 370

Query: 366 SVV---WEPAPSVEA 377
            +    +EP PS++A
Sbjct: 371 LMAIEGYEPDPSIKA 385


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
 gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
          Length = 436

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 6/343 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E++   P + P A+ +APTRELA+Q+  + + L A TG+  A+  GG S  ++   ++ G
Sbjct: 76  EHEGRKP-NQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182
           A I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK R  
Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 196/367 (53%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +   G+   T +Q       +  K+++  AQTGSGKT+ + L  A   +  
Sbjct: 143 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLP-AVVHINN 201

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            +       P+AL +APTRELA Q+ +++  L+ ++  + + CI GG     + RDL NG
Sbjct: 202 QEPLKKGDGPIALVLAPTRELAQQI-QKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNG 260

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM
Sbjct: 261 VEIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 320

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++N+ S     + +I     +    ++++ ++++L+   
Sbjct: 321 WSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIA 380

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V   T+ +     + V + G+ SQ ER + L+  R GRA + +A
Sbjct: 381 NMEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVA 440

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ +KG S      +  ++A+ L 
Sbjct: 441 TDVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLV 500

Query: 360 --FREAN 364
               EAN
Sbjct: 501 AVLTEAN 507


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 35  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 89  ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 149 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 209 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 269 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 328

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 329 NYDLPNNRELYIHRIGRSGRYGRKGVAI 356


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 193/361 (53%), Gaps = 25/361 (6%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----ENDRFSP-A 72
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + +     EN R+    
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEENGRYGRRK 258

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H++V TP
Sbjct: 259 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP 318

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSAT 188
           GRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +MFSAT
Sbjct: 319 GRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSAT 378

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-A 247
               I  LA+++  + + + +        +I  + V V  SD+ + ++++L   G  +  
Sbjct: 379 FPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLT 438

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT VAARG
Sbjct: 439 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 498

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E N+++
Sbjct: 499 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNERNINI 546

Query: 368 V 368
            
Sbjct: 547 T 547


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 189/337 (56%), Gaps = 13/337 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  +L  +           AL
Sbjct: 45  GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 99  ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +  D +R+ +  +      I  +   VA+ DR+    + ++++        A++FC+TR
Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLIDLYDTLTITQAVLFCNTR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + 
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase  [Aspergillus fumigatus Af293]
 gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
          Length = 472

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 186/340 (54%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+     F   
Sbjct: 65  EACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENPQSF--- 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+ +  E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 122 ---FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATP 178

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+S 
Sbjct: 179 GRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFLFSATMSS 238

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+++S   Q  S +    + +    +D  +V +L     ++ I+F
Sbjct: 239 KVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIF 298

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R + +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 299 TRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDI 358

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q
Sbjct: 359 PSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ 398


>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 532

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 180/335 (53%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  +        
Sbjct: 21  AINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPILHLLSQKPLSEVVKG 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA Q+   ++       +   V  GGV+ + +   L+    I+V TPG
Sbjct: 81  RPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNANPQIARLKKPLDILVATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FSAT S  I
Sbjct: 141 RLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAMLPKQRQNLLFSATFSDEI 200

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    +VA   +   + ++++ +  +  ++F  T
Sbjct: 201 KALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRELMSHLIQQNDWQQVLIFTRT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L +   Q  A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+  L
Sbjct: 261 KHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDGTMRVLVATDIAARGLDIDQL 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL + PE+ +HR GRTGRAG  G +V ++
Sbjct: 321 PQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLV 355


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 179/335 (53%), Gaps = 2/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE GY   + +Q   +   LR  D+L SAQTG+GKT +F L +   L   N   + ++
Sbjct: 15  AVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQRL--HNQPRAKSN 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA QV   +        +  AV  GGV +  +   L+ G  I+V TPG
Sbjct: 73  HTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLRGGVEILVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  + + +  S +  +VLDEAD MLD+GF  DI+ I++  PK+R+ L+FSAT S AI
Sbjct: 133 RLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQNLLFSATFSEAI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLAK      V +++A  N     +      V  + +   + +++  +     +VF  T
Sbjct: 193 RTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHLIHKNKWGQTLVFSKT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++  + LAE      A+ G  SQ +R+  L   + G   + +ATD+AARGID+  L
Sbjct: 253 KHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHILVATDIAARGIDIDQL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 313 PCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLV 347


>gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7]
          Length = 391

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114
             +LL    + D       P AL +APTRELA Q+  +   L  +   +  +CI GG   
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHEL-TRFSQLYNLCITGGSDF 124

Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+
Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184

Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
              P   +R+ L+FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++
Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  IL     K  I+F + +  V R    L  H  +V  LSG+++QQ+R   LQ  +
Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N
Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363


>gi|297243779|ref|ZP_06927709.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD]
 gi|296888200|gb|EFH26942.1| ATP-dependent RNA helicase [Gardnerella vaginalis AMD]
          Length = 642

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 18/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E L   G      +Q+A L   L+  ++L   +TGSGKT+AF + L + L AEN
Sbjct: 176 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 234

Query: 67  ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                    +R S  S    AP A+ +APTREL  Q+   +  L A  G+      GGV 
Sbjct: 235 FVDLIHSDKNRKSRESSDIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMCTVTVYGGVR 294

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             R+   L+ GA IV+  PGRL D +R   L +  +   VLDEADEM D+GF   +  +L
Sbjct: 295 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 354

Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +  +P  +RML FSAT+   ++TL + +  +AV   +   + Q   + +    V+  D+ 
Sbjct: 355 EQVAPDGQRML-FSATLDRQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDKY 413

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +    G K +I F  T+       K   +     V L G LSQ +R   L +  +
Sbjct: 414 EVLRKLAS--GKKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVFAE 471

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  RV +ATDVAARGID+ D+ LV+  E   +P++ LHRSGRT RAG +G  V ++  N 
Sbjct: 472 GLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLPNQ 531

Query: 353 QRRAERLFREANVSVVWE 370
           +R A  + R+A +    E
Sbjct: 532 KRAAHMMLRKAGIHAKAE 549


>gi|290996680|ref|XP_002680910.1| dead box helicase protein [Naegleria gruberi]
 gi|284094532|gb|EFC48166.1| dead box helicase protein [Naegleria gruberi]
          Length = 657

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 203/353 (57%), Gaps = 14/353 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK----DVLVSAQTGSGKTVAFGLALASTLL 63
           PQ++     E G+  +T++Q   +   L EK    D++  A TG GKT+AF L  + + +
Sbjct: 69  PQLLKSLKKEFGFEYMTAIQHLTIPNALGEKGKGKDIIAQAATGQGKTLAF-LVPSLSCM 127

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN++         + +APTRELA+Q+    + L   T    A  IGG  V  E+  L +
Sbjct: 128 MENEK--NVHGIYIMVLAPTRELALQIQTVADKLLKHTNYKAACVIGGNKVSVEQAQLAD 185

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +++ +PG+  DHI+ + L+ +HLK  +LDEAD +LD GF + ++ I+   PK+R+ 
Sbjct: 186 PTVRVLIASPGKCLDHIQRESLDCTHLKFFILDEADRLLDSGFEETLKKIVMQLPKQRQT 245

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +FSAT++  +  LA  + + D +++ + +  +++ S ++ R   V    +  A+V++LR
Sbjct: 246 YLFSATMTDKVDDLAHISLKNDIMKLGLDNGGSKRVSTLEQRYYEVPNDKKMAALVSVLR 305

Query: 241 YHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNAL-QMMRDGRARV 297
            +  K  I F ST+ SV   T VL  A  +  VV LSG ++Q++RS    Q M D    +
Sbjct: 306 NNVDKKIITFVSTKLSVEFATTVLQNASGVGNVVQLSGNMTQEKRSEIFFQFMEDRNPGI 365

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            +AT+VAARG+D P+++L++  ++   P +  HR+GRT RAG+KG+SV F+ P
Sbjct: 366 LVATNVAARGLDFPNVDLIVQFDIPEQPADYFHRAGRTARAGKKGLSVLFLTP 418


>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
 gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 482

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/340 (35%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 69  EACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEK-----PQ 123

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HIVV TP
Sbjct: 124 SL-FGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATP 182

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 183 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 242

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V +L  +  ++AIVF
Sbjct: 243 KVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKDLYLVYLLNEYAGQSAIVF 302

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 303 TRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 362

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L  + +  +HR GRT RAG+ G +  ++ Q
Sbjct: 363 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQ 402


>gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 604

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 202/376 (53%), Gaps = 16/376 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ EA+   G+   +S+QE  +   +   D++  + TGSGKT+AF +     +  E  
Sbjct: 14  PEIL-EAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALECIDPEE- 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAH 126
                     LA+ PTRELAVQ+ RE++ L      V AV I G S  R + D L+ G  
Sbjct: 72  -----RCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRGVQ 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            VVGTPGR+ D +    L +  L+ ++LDEADEMLD+GF +DIE I D+ P+ ++ L FS
Sbjct: 127 FVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP I+ L   + K+ V+++I         I+     V  S R   +  +L     K 
Sbjct: 187 ATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKIKM 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF +T+  V      L    + V  L G++ Q  R   +   R G  R+ +ATD+AAR
Sbjct: 247 GLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           G+D+ D++ V++ EL  +PE+ +HR GRT RAGRKG ++  + +   ++  R ER     
Sbjct: 307 GLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERF---- 362

Query: 364 NVSVVWEPAPSVEAIR 379
            + V   P P + A++
Sbjct: 363 -IGVKLTPEPVLTAVQ 377


>gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 603

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 194/359 (54%), Gaps = 15/359 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75
           YV  T VQ   +   L E+D++  AQTGSGKT AF   + S ++     E  R S A  P
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYP 230

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            A+ ++PTRELA Q+  E +    +TGV V V  GG  +H++ R+L+ G  I+V TPGRL
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRL 290

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191
            D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+  R+ ++FSAT   
Sbjct: 291 NDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPS 350

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA ++  + + + +         I  R   V  SD+ + ++++L  H  +      
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLL--HAQRETQ--D 406

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L  + F   ++ G+ +QQER  AL+  + GR  + +ATDVAARG+D+P
Sbjct: 407 KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIP 466

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367
            +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N   + R    L +EAN  V
Sbjct: 467 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 525


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 181/338 (53%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTILEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+ P I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPPEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILR-YHGAKNAIVF 250
             +   +  +  +V ++        +    V        +   +  +LR     KNAI+F
Sbjct: 192 RRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRLLREAKDLKNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F V AL G++ Q  R  AL   R G   + +A+DVAARG+D+
Sbjct: 252 CNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  V + ++  + ++ +HR GRTGRAGR G ++ ++
Sbjct: 312 PEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIV 349


>gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169]
 gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1]
 gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1]
 gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8]
 gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1]
 gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E]
          Length = 391

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114
             +LL    + D       P AL +APTRELA Q+  +   L  +   +  +CI GG   
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124

Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+
Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184

Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
              P   +R+ L+FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++
Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  IL     K  I+F + +  V R    L  H  +V  LSG+++QQ+R   LQ  +
Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N
Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363


>gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 454

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
 gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
          Length = 483

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 187/341 (54%), Gaps = 8/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    A  +
Sbjct: 105 VMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPAPKE 164

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126
           R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     
Sbjct: 165 RY--MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCD 222

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+
Sbjct: 223 ILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLL 282

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  
Sbjct: 283 FSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNRW 342

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA
Sbjct: 343 ERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRITVLVATDVA 402

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 403 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSI 443


>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
 gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 454

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 190/338 (56%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL ++ 
Sbjct: 10  PEIV-KALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLL-DSK 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + +      AL +APTRELA Q+   +      T + V    GG  +  + R L+ G  I
Sbjct: 68  KSATRRTARALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERALEPGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +HI  + ++I++L+ +V DEAD MLD+GF + I  I+       ++++FSA
Sbjct: 128 LVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA +  +   R+++  EN   S I +    V    +   +  ++     +  
Sbjct: 188 TSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVAARG
Sbjct: 248 LVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  VI+ ++    E+ +HR GRTGRAG+KG ++
Sbjct: 308 LDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAI 345


>gi|172040180|ref|YP_001799893.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
 gi|171851484|emb|CAQ04460.1| putative ATP-dependent RNA helicase [Corynebacterium urealyticum
           DSM 7109]
          Length = 497

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/350 (35%), Positives = 190/350 (54%), Gaps = 15/350 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL + G     ++QE  L   LR  D++  A+TG GKT+ FG+ L   +  +     
Sbjct: 29  IAEALEQAGMPTAFAIQELTLPIALRGDDLIGQARTGMGKTLGFGVPLLDRIFDDAGITE 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDLQN 123
              +   L + PTREL +QV  +L    A          V V    GGV  +++ R L  
Sbjct: 89  LDGSVRGLVVVPTRELCLQVAEDLTLATANLVIPANDHRVTVTPIYGGVGFNQQIRALSR 148

Query: 124 GAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  +VVGTPGRL D H RG+ L +S ++ +VLDEADEMLD GF DDI  I+  +   R+ 
Sbjct: 149 GTDVVVGTPGRLLDLHRRGE-LELSGVEVLVLDEADEMLDQGFLDDIRQIMSLTSPDRQT 207

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVNI 238
           ++FSAT+   + +L++ + K  V   I +++   +D   R   +A      DR + +  I
Sbjct: 208 MLFSATMPGPVLSLSREFMKQPVM--IQADSTAAADTHERVTQIAFQSHKLDRMSTLSRI 265

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    IVF  T+   +   + LA   F+V A+ G++ Q +R  +LQ+ RDG   V 
Sbjct: 266 LQSPGRGRTIVFTPTKRQAAMVAEDLAAWGFRVGAVHGDMRQADREQSLQLFRDGAVDVM 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  V++ ++  +    +HR GRT RAG+ G ++ ++
Sbjct: 326 VATDVAARGIDVTDVTHVVNYQVPEDERTYVHRIGRTARAGKDGTAITLV 375


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 181/347 (52%), Gaps = 11/347 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E GY   T VQ+  +   L+  DV+  AQTG+GKT AF L L   L+    +    
Sbjct: 14  KALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQRLMTLPSQAEQV 73

Query: 73  SAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           S  +           AL + PTRELA QV   +      T + VAV  GG S++ + + L
Sbjct: 74  STAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTSMNVQVKAL 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA I+V TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI+ I+   P +R+
Sbjct: 134 NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMKRMPAERQ 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT S  +  LA +   +   V +   N     ++     V    +   +  ++  
Sbjct: 194 TLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDKHRKAELLAYLIGS 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+    +  K L     +  +++G+ SQ  R  AL   + G+ RV +AT
Sbjct: 254 RNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVLVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+  LE V++ ++    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 DVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLM 360


>gi|239996465|ref|ZP_04716989.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 441

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 189/337 (56%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +    LT +QE  + P ++ KD++ S++TGSGKT AF +   + L+++  +      
Sbjct: 16  LETKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMSQ--KALSRQD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA QV  E + +     +  ++ +GG + + + + L+   HI+VGT GR
Sbjct: 74  PRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNPHIIVGTAGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-SPA 192
           + DH+  K + ++ L+ ++ DEAD MLDLGF   ++ I D +  +KR+ ++FSAT+ +  
Sbjct: 134 VADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLFSATLDNIE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFC 251
           +  +     K AVRV +     +H DI+ +       D  + I+   L       AIVF 
Sbjct: 194 LKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRTYNQAIVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R   +L E   + +AL G++ Q +R+  +     G+  + + TD+A+RG+DL 
Sbjct: 254 ATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDLASRGLDLS 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + LV++ +L  N +  +HR GRTGRAG+KG +  +I
Sbjct: 314 KVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLI 350


>gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
 gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
          Length = 437

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 188/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQV  E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQKFYNVLIEELPA 408


>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 455

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 195/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCS 252
             LA+    + + + +A  N     +      V    R   ++++L   G  +  +VF  
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD-KKRKRELLSLLIGQGNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +
Sbjct: 254 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLVATDIAARGLDIEE 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQN-MQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G  +S+  I ++ + R  E+L ++    +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLLKKEIPRITT 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 PGYEPDPSIKA 384


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 58  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 112 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 172 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 232 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 292 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 352 NYDLPNNRELYIHRIGRSGRYGRKGVAI 379


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR G +GR GRKG+S+  + ++ +R    + +  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPA 407


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 185/358 (51%), Gaps = 21/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY+  T +Q+  +   L  +D+L  AQTG+GKT AF + +   L +   +  
Sbjct: 14  ILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPILQHL-SSGMQAE 72

Query: 71  PASAPL------------------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
           P   P                   AL + PTRELAVQ+G          G+      GGV
Sbjct: 73  PTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKYVGLKHLTIFGGV 132

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
               +   L+ G  I++ TPGRL D I  + + +  +   VLDEAD MLD+GF  DI+ +
Sbjct: 133 KQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRMLDMGFVADIKRL 192

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L   PK R+ L FSAT+   I  L+K+   D VRV +         ID R   V   ++ 
Sbjct: 193 LPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAIDQRVYFVEKPEKK 252

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V++LR    K+ +VF  T+      +++L++   +  A+ G  SQ  R   L   + 
Sbjct: 253 KLLVSLLREED-KSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQNHRQRVLTDFKS 311

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           G+ RV +ATD+AARGID+ +LE+VI+ +L   PE  +HR GRTGRAG  G ++ F  P
Sbjct: 312 GKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCTP 369


>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 425

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 128/356 (35%), Positives = 192/356 (53%), Gaps = 11/356 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV    + E GY   T +Q   + P +  +DV+  AQTG+GKT AF L +   L+    
Sbjct: 10  PQV-AAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPILHRLMKGQK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL +APTRELA Q  + +  L  KTG+  A   GGV +  + + L+    I
Sbjct: 69  -----GGIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKLKK-VDI 122

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV  PGRL DHI  +  N+S L+ +V+DEAD++ D+GF  DI+ IL   PK+R+ L+FSA
Sbjct: 123 VVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQTLLFSA 182

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LA +  ++   V + +E    + + +    VA   +   ++++L+   A++ 
Sbjct: 183 TMPAEIRKLAADILQNPATVQVGNEAPADT-VSHALYPVAQHLKTAFLLDLLKQTQARSV 241

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+       + LA   F+  +L G LSQ +R  AL   R G  ++ +ATD+AARG
Sbjct: 242 LVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILVATDIAARG 301

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           ID+  +  VI+ ++ S PE  +HR GRTGRA   G +   I    +NM R   RL 
Sbjct: 302 IDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAINRLL 357


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPA 408


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L + + R
Sbjct: 11  QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L ++PTRELA Q+                V  GGV++ R+ R +  G  I+
Sbjct: 70  RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P KR+ L FSAT
Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA  Y  + V+V +         +D + +      +   + ++LR    +  +
Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ +L + PE+ +HR GRT RAG +G ++
Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 180/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  + + ++A
Sbjct: 16  LTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQVA-SNA 74

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV +  +       +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 75  VRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + L+ +VLDEAD MLDLGF  +++ +  + PK+R+ L+FSAT S  I 
Sbjct: 135 LLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRRQTLLFSATFSDVIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A    +D V V ++  N     +    + V    +    +++L+       +VF  TR
Sbjct: 195 QMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQEKRWGQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L        ++ G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 KGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L  N E+ +HR GRTGRAG  G +V ++
Sbjct: 315 LVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLV 348


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 127/353 (35%), Positives = 181/353 (51%), Gaps = 5/353 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +Q   +   L  KD+   AQTG+GKT AF L  +   LA N +  P 
Sbjct: 19  QALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALP-SIHYLATNPQARPQ 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTRELA Q+ R          + V    GGV + R+ R L  G  I+V TP
Sbjct: 78  RGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDRGTDILVATP 137

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I  + L +  ++  VLDEAD+MLDLGF   +  I    PK R+ L FSAT+   
Sbjct: 138 GRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFSATMPKT 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFC 251
           I  L+  +  D V V++A ++     ++   + V  S++   +   L+   G   A+VF 
Sbjct: 198 IQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTITLKNTPGLDRALVFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R  + L        A+ G  SQ +R  AL   R+GR ++ +ATD+AARGID+P
Sbjct: 258 RTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVATDIAARGIDVP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFR 361
            +  V + EL +  E  +HR GRT RAGR G ++  I  + +   R  ERL R
Sbjct: 318 GVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLRSIERLTR 370


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 489

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P  +   L+ +G    +++Q A L   L  +DVL  +QTGSGKT+AFGLAL + 
Sbjct: 62  FEDLEMPAQLKSTLARQGLTTPSAIQAATLPNSLAGRDVLGRSQTGSGKTLAFGLALLAR 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R +    PLA+ +APTRELA QV   L        V     +GG+ + R+ R L
Sbjct: 122 L---EGRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTTTVVGGMPISRQSRAL 178

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D +      +  +   VLDEAD+M D+GF   +  IL   P   +
Sbjct: 179 RQGVELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTDMGFMPQVTAILTEVPTGGQ 238

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   + TL + +  D V  ++       S +++  + V+ +D+ +A   I   
Sbjct: 239 RMLFSATLDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEHHVLHVSHADKQDAATRIAAR 298

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    I+F  T+ +V R  K L     +   L G  SQ +R+  L+  ++G     +AT
Sbjct: 299 DG--QVILFLDTKHAVDRMAKHLLNSGVRAAPLHGGRSQPQRTRTLKQFKEGTVTALVAT 356

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG+ G  V ++  + +R  +RL R
Sbjct: 357 NVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGQTGSVVTLVLPSERRDMDRLMR 416

Query: 362 EANV 365
            A +
Sbjct: 417 LARI 420


>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 355

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 173/315 (54%), Gaps = 3/315 (0%)

Query: 33  PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR 92
           P L  +D++ +AQTG+GKT  F L L   L  E  + +P S   AL +APTRELA QV  
Sbjct: 2   PVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNSI-RALVLAPTRELADQVHE 60

Query: 93  ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
            +        +      GGVS++ +   L+ G  ++V TPGRL D  R K +  S L+ +
Sbjct: 61  SIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAVKFSQLQTL 120

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           +LDEAD MLD+GF   +  I+  +P K  R+ L+FSAT +  +  LAK +  +   V I 
Sbjct: 121 ILDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTEPSIVEIE 180

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
           S N    +++     VA +D+   + N++  +G +  +VF + +  V R  + L      
Sbjct: 181 SLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVN 240

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
              LSG++ Q +R   L+  R+G+ RV +ATDVA RGI +  +  VI+  L   P++ +H
Sbjct: 241 AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVH 300

Query: 331 RSGRTGRAGRKGMSV 345
           R GRTGRAG  G+S+
Sbjct: 301 RIGRTGRAGADGVSI 315


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 185/352 (52%), Gaps = 20/352 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +ALS +G      +Q   L   L  +D++  A+TG+GKT+ FGL    TL+  +    
Sbjct: 53  ICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGL---PTLMKVH---G 106

Query: 71  PASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           PASA           P A+ I PTREL  QV  +L     +T V +    GG +   +  
Sbjct: 107 PASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAFEPQID 166

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  ++VGTPGRL D ++ K L +  +  VVLDEADEMLDLGF  D+E +L   P+ 
Sbjct: 167 ALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLSRVPQT 226

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  LA+ Y K    +     + Q + +     ++      N I  + 
Sbjct: 227 RQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNKIEVVA 286

Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R   A+    A++F  T+ + +  ++ L+   F V +L G+L Q  R  A++  R G+  
Sbjct: 287 RILQARERGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFRSGKVD 346

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG  G +V  +
Sbjct: 347 VLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFV 398


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406


>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
 gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
          Length = 454

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIKVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
 gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
          Length = 574

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 188/352 (53%), Gaps = 19/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70
           +A+++ GY N + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L      +
Sbjct: 167 KAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMTEEN 226

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P A+ +APTRELA Q+  E         + V   +GG S+  +   L+ G  IV+ 
Sbjct: 227 EAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEEQGFKLRQGCEIVIA 286

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----------- 179
           TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P             
Sbjct: 287 TPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDAEL 346

Query: 180 ------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++ +
Sbjct: 347 DEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLITQNVLMVKDSEKLD 406

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L     K AIVF +T+ +     + L +  ++V  L G  +Q++R  +L+  R  
Sbjct: 407 RLQRMLNDLADKTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGKTQEQREISLEGFRSK 466

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R    +ATDVA RGID+PD+  VI+ ++ +N E   HR GRTGRAG+ G++ 
Sbjct: 467 RYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRAGKTGVAT 518


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 184/345 (53%), Gaps = 8/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +    GGVS             +VV TP
Sbjct: 75  GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQDMVVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +R+ L+FSAT+ S 
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLFSATLESD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           A+   A     D V V+     R+   I    YRA   +L  +   + ++LR      ++
Sbjct: 195 AVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRAD--SLKHKTALLCSLLRQPDVTKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +   Q   L GE+ Q +R+ A++ M DGR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I  + Q
Sbjct: 313 DIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQ 357


>gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 472

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 202/379 (53%), Gaps = 13/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q A L   L  +DVL   +TGSGKT+AFGL L   L+  
Sbjct: 34  DLPAEVLDVLARLGLDTPFPIQSATLPDALAGRDVLGRGRTGSGKTLAFGLPL---LVRA 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +  P AL + PTRELA QV   LE       + +A  +GG+S+ R+   L++GA
Sbjct: 91  AGRRAESRRPHALVLVPTRELAQQVTDALEPFARALKLRLATVVGGMSIGRQATALRDGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLM 184
            +++ TPGRL D +  K   +  + A VLDEAD+M DLGF   +  +LD   P+ +RML 
Sbjct: 151 EVLIATPGRLMDLVERKDCRLDRVAATVLDEADQMADLGFMPQVTELLDLVRPEGQRML- 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++   +   S +D+  + V  +D+      I    G 
Sbjct: 210 FSATLDRNVDLLVERYLADPVVHSVDPSSATVSTMDHHVLHVHGADKFATATEIAARDG- 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+A+V RFTK L     +  AL G  SQ  R+  L   R G   V +AT+VA
Sbjct: 269 -RVIMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFRSGEVPVLVATNVA 327

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G+ V ++    +R   RL  +A 
Sbjct: 328 ARGIHVDELDLVVNVDPPADHKDYLHRGGRTARAGESGLVVTLVTPEERRDVARLMADAG 387

Query: 365 VSVVWEPAPSVEAIRERDA 383
           +       P V  +R  +A
Sbjct: 388 IR------PQVTQVRSGEA 400


>gi|298252651|ref|ZP_06976445.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1]
 gi|297533015|gb|EFH71899.1| ATP-dependent RNA helicase [Gardnerella vaginalis 5-1]
          Length = 609

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/386 (34%), Positives = 199/386 (51%), Gaps = 21/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E L   G      +Q+A L   L+  ++L   +TGSGKT+AF + L + L AEN
Sbjct: 158 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 216

Query: 67  ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                    +R S  S    AP A+ +APTREL  Q+   +  L A  G+      GGV 
Sbjct: 217 FVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTVYGGVR 276

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             R+   L+ GA IV+  PGRL D +R   L +  +   VLDEADEM D+GF   +  +L
Sbjct: 277 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 336

Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +  +P  +RML FSAT+   ++TL + +  +AV   +   + Q   + +    V+  D+ 
Sbjct: 337 EQVAPDGQRML-FSATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDKY 395

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +    G K +I F  T+       K   +     V L G LSQ +R   L +  +
Sbjct: 396 EVLRKLAS--GRKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVFAE 453

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  RV +ATDVAARGID+ D+ LV+  E   +P++ LHRSGRT RAG +G  V ++  N 
Sbjct: 454 GLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLPNQ 513

Query: 353 QRRAERLFREANVSVVWE---PAPSV 375
           +R A  + R+A +    E   P+ SV
Sbjct: 514 KRAAHMMLRKAGIHAKAEDVSPSSSV 539


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F    L +  T++ E          
Sbjct: 43  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQVIDTVVRETQ-------- 94

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 95  -ALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRV 153

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 154 ADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 213

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 214 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 273

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 274 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 333

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 334 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 364


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 185/337 (54%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVI------DTAVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L  N EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 338 NYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 190/343 (55%), Gaps = 14/343 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  ++              AL ++PT
Sbjct: 47  SAIQQRAILPIIQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   +  L     V    CIGG S+  + R L+ G H+V GTPGR+ D IR + 
Sbjct: 101 RELATQIQSVILALGDYMNVQCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L   ++K +VLDEADE+L+ GF+D I  +    P   ++++ SAT+   +  +   +  D
Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTD 220

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            +R+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V   
Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ +    F V ++ GE+ Q+ER   +   R G +RV I TDV ARGID+  + LVI+ +
Sbjct: 279 TEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRVLITTDVWARGIDVQQVSLVINYD 338

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           L +N EN +HR GR+GR GRKG+++ FV  ++++  R  E+ +
Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAINFVTVEDVRILRDIEQFY 381


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 298 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 515


>gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 453

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 188/341 (55%), Gaps = 12/341 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFS 70
           A+++ GY   + +Q   +   L   DVL +AQTG+GKT  F L +   L  +   N+R  
Sbjct: 15  AIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRLSQKAYGNNR-- 72

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127
               P+  L + PTRELA Q+G  +    A     +   V  GGV ++ +   L+ G  I
Sbjct: 73  ----PVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGGVDI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + +  ++ ++LDEAD MLD+GF  DI  I+   PKKR+ L+FSA
Sbjct: 129 LVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  L      + +++ +A  N     ++  A LV  +++   + ++++ H  +  
Sbjct: 189 TFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDWQQV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+   +R T+ L +   +  A+ G  SQ  R++AL   + G  RV +ATDVAARG
Sbjct: 249 LVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  L  V++ EL   PE+ +HR GRTGRAG +G ++ ++
Sbjct: 309 IDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLV 349


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 180/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F    L +  T++ E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISTLQIIDTVVRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L  G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VRV +  +      I    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPTNRENYIHRIGRSGRFGRKGVAI 365


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 193/338 (57%), Gaps = 13/338 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94
           +D++  A+TGSGKT+AFG+     +L +N +    S    P  L ++PTRELAVQ+   L
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                  G+      GG S   +   +++G  IV+GTPGRL D I    L +S +  VVL
Sbjct: 212 REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 271

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213
           DEAD MLD+GF + + FIL ++ K R+M+MFSAT    +  LA+ +   + ++V I S +
Sbjct: 272 DEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD 331

Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268
              ++ D   ++  L +  RD  ++ +L +YH ++    +VF   +    R  + L +  
Sbjct: 332 LA-ANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 390

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           ++ V++ G  +Q ER+ +L + ++G   + +ATDVAARG+D+PD+E+VI+       E+ 
Sbjct: 391 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450

Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           +HR GRTGRAG+KG++  F  P N     E   + REA
Sbjct: 451 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 488


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 184/335 (54%), Gaps = 11/335 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   +++Q+  + P    +DV+  AQ+G+GKT    LAL   +L  N R     
Sbjct: 35  GLYSYGFEKPSAIQQRAIVPITSGRDVIAQAQSGTGKTSMISLALCQ-MLDTNTR----- 88

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELA Q  +    L     V V  CIGG S+  + R L +G HIV GTPG
Sbjct: 89  EVQALVLSPTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDIRKLDHGVHIVSGTPG 148

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L   ++KA++LDEADEML+ GF++ I  +    P + ++++ SAT+   +
Sbjct: 149 RVFDMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPQEV 208

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVF 250
             +   +  D VR+ +  +      I  +   VA+   +   + + ++        A++F
Sbjct: 209 LEMTTKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 266

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T  + ++ F V ++ G++ Q+ER   +   R G  RV I TDV ARGID+
Sbjct: 267 CNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARGIDV 326

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 327 QQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAI 361


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L + + R
Sbjct: 11  QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L ++PTRELA Q+                V  GGV++ R+ R +  G  I+
Sbjct: 70  RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P KR+ L FSAT
Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA  Y  + V+V +         +D + +      +   + ++LR    +  +
Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ +L + PE+ +HR GRT RAG +G ++
Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346


>gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40]
 gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 436

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 4/341 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL +  +   T VQ   +   L  KD++VSA+TGSGKT AF L +    L  ND 
Sbjct: 10  QSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPMLHKFL--NDP 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P ++  AL + PTRELA+Q  +  E     T + V + +GG +   +   ++    ++
Sbjct: 68  -RPNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVATVRKNPEVL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL +HI+   ++ S L+ +VLDE+D MLD+GF++++  I     ++R+ L+FSAT
Sbjct: 127 VATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEERQNLLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNA 247
           +            +D VR+ + S    HS+I  + V     S ++  +V ++    A+  
Sbjct: 187 LKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKLIAEEDAQRV 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC+TR    + + +L  +      + GE++Q +R   +    DG+ RV +ATDVAARG
Sbjct: 247 IVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVLVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ D++LVI+   +   +  +HR GRTGR+ + G+++ +I
Sbjct: 307 LDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLI 347


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 129/354 (36%), Positives = 187/354 (52%), Gaps = 9/354 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 225 VSKSGYVKPTPVQKHGVPIISAGRDLMACAQTGSGKTAAFLLPILQHLMADGVAASQFSE 284

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL +APTREL  Q+  E       T V   V  GGVS   + RDL  G +I+ GT
Sbjct: 285 LQEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTGHQIRDLCRGCNILCGT 344

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSA 187
           PGRL D I    + ++ L+  VLDEAD MLD+GF  D+  ++ S   P K  R+ LMFSA
Sbjct: 345 PGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEPDMRRLVGSPGMPTKEDRQTLMFSA 404

Query: 188 TISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T    I  LA ++ K D + + +       +D++   V V   D+   ++ +L+  G   
Sbjct: 405 TYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEVTKFDKREKLLELLKTTGTDR 464

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L +      ++ G   Q+ER  AL   R G+  V +AT VAAR
Sbjct: 465 TMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDFRSGKCPVLVATSVAAR 524

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           G+D+PD++ V++ +L +N +  +HR GRTGR G  G +V F  P N  + A  L
Sbjct: 525 GLDIPDVQNVVNFDLPNNIDEYVHRIGRTGRCGNLGRAVSFFDPDNDSQLARPL 578


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 181/325 (55%), Gaps = 11/325 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P  + +DV+  AQ+G+GKT  F +++  ++              AL ++PT
Sbjct: 47  SAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   +  L     V    CIGG SV  + R L+ G H+V GTPGR+ D IR + 
Sbjct: 101 RELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L   ++K +VLDEADE+L+ GF+D I  +    P   ++++ SAT+   +  + + +  D
Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTQKFMTD 220

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            +R+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V   
Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ + +  F V ++ GE+ Q+ER   +   R G +RV I TDV ARGID+  + LVI+ +
Sbjct: 279 TEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRVLITTDVWARGIDVQQVSLVINYD 338

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L +N EN +HR GR+GR GRKG+++
Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAI 363


>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 471

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   GYV  T +Q   +   +  +DVL  AQTG+GKT AFGL +   L+ E
Sbjct: 7   NLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHRLVQE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       L +APTRELA Q+   L  +  +T +      GGV+++ + + L+ GA
Sbjct: 67  ERGHV-----RGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKEGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  D+  IL + P KR+ LMF
Sbjct: 122 EIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA    ++ V V + S     + + +    V    +   +  +L++   +
Sbjct: 182 SATMPDDIRRLAHEILRNPVTVQV-SRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AA
Sbjct: 241 SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RGID+  +  VI+ ++   PE   HR GRTGRA + G
Sbjct: 301 RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTG 337


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 186/340 (54%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     RFS 
Sbjct: 222 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSE 281

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G ++V GT
Sbjct: 282 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAHQIREISRGCNVVCGT 341

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 342 PGRLLDMIGRGK-VGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFS 400

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K D + + +       SD++   + V    +   + ++L+  G +
Sbjct: 401 ATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKREQLHDLLKTTGME 460

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 461 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTDFRSGKCPVLVATSVAA 520

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 521 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 560


>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933]
 gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           G5101]
 gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
           493-89]
 gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
           2687]
 gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1125]
 gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1044]
          Length = 455

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
 gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
 gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
 gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
 gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
 gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952]
 gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
 gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B]
 gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
 gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE
 gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
 gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
 gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
 gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
 gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
 gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
 gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
 gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
 gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
 gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
 gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
 gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           155-74]
 gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
          Length = 454

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score =  194 bits (493), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 15  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 69  VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 128

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 129 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 188

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 189 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 248

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 249 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 308

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 309 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 363


>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 478

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 180/343 (52%), Gaps = 4/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + +  AL E+ Y   T +QE  +   L  +D+L  AQTG+GKT AF + +   LLA+
Sbjct: 8   NISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPIIEQLLAD 67

Query: 66  ---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                + +P     AL + PTRELA+Q+   L      T +   V  GGV    +  +L+
Sbjct: 68  PISQQKGAPRKI-RALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQTDELR 126

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+  TPGRL D +    + + H++  VLDEAD MLD+GF  D++ +L   P K++ 
Sbjct: 127 AGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKLPPKKQT 186

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+  +I  LAK+  ++  RV +   +     I      V    +   +  +L   
Sbjct: 187 LFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQLLLGE 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+       + L+       ++ G+ SQ  R  AL   ++GR+ V IATD
Sbjct: 247 AGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGRSNVIIATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  L+LV++ +L   PE  +HR GRTGRAG +G ++
Sbjct: 307 IAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAI 349


>gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
 gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
          Length = 471

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/418 (31%), Positives = 208/418 (49%), Gaps = 17/418 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T +Q   +   L  +D++  AQTG+GKT AF L +        ++  P 
Sbjct: 16  DCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLPIL-------EQLDPT 68

Query: 73  -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELAVQV   +    A   + V    GG S+ R+   L+ GA ++VGT
Sbjct: 69  VKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLRRGAQLIVGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +    + +  L   VLDEADEML++GF  D+  IL+  P  R+   FSAT++P
Sbjct: 129 PGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKTAFFSATMAP 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVF 250
            I  L+K +  D V V +       + I+  A  +  +  R   +  +L     ++AI+F
Sbjct: 189 EIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWARSTVLQAVLELEDPESAIIF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR   +  T+ L    +      G+LSQ +R   L   R  R R  +ATD+AARG+ +
Sbjct: 249 VRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVVATDIAARGLHV 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            DL  VI+ E   + E+ +HR GRTGRAG +G ++ ++    + +   + +     +   
Sbjct: 309 DDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEIEKHIRQEIPTL 368

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGFLRI 423
           P P+  AI  R  +++ ++   L SI   E+       V  L   +D + IAA  L++
Sbjct: 369 PTPTRSAIEGRRLEKLTEE---LHSILTGERLASFLPTVSQLGEDYDTQTIAAAALQM 423


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406


>gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
          Length = 446

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
 gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/377 (32%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  +++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   LL +N 
Sbjct: 10  PEIL-RSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLLE-LLVKNQ 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +    P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
              +    ++  PS++A
Sbjct: 368 IPRITTEGYDVDPSIQA 384


>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 397

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 173/331 (52%), Gaps = 1/331 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +S +GY   T +Q+  +   +   D+L  AQTG+GKT AF L + +     N     A +
Sbjct: 17  VSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINNF-GRNKIDINAKS 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             +L + PTRELA Q+ + ++      G+   V  GGV    +   +  G  I+V TPGR
Sbjct: 76  TRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQVDSIALGLDILVATPGR 135

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D I+   +N   L+  VLDEAD MLD+GF  D++ I+   PK R+ L+FSAT+   I 
Sbjct: 136 LLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPKNRQTLLFSATMPAEIE 195

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D  ++ I +E      I+     +  S++   ++NIL     K  ++FC T+
Sbjct: 196 ILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPLLLNILEKSHYKKVLIFCKTK 255

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + L E      +L    +Q  R  ALQ  +D    V +ATDVAARGID+ ++ 
Sbjct: 256 PGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVLVATDVAARGIDVDNIT 315

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+  L  +P N +HR GRT RAG+ G+++
Sbjct: 316 LVINYNLPEDPRNYIHRIGRTARAGKSGIAI 346


>gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 427

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L++GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPVKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      + +   + SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
 gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
          Length = 444

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 198/371 (53%), Gaps = 9/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   T +Q+  +   L+  D+L  AQTG+GKT  F L L   L ++       S
Sbjct: 15  AVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQRLQSKYQDVQ-KS 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +           AV  GGVS++ +++ L  G  IVV TPG
Sbjct: 74  FPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQKLIKGVDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + +++S ++ +VLDEAD MLD+GF  DI  ++   PKKR+ L+FSAT S  I
Sbjct: 134 RLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKRQTLLFSATFSSEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA  + +   ++ +  +N   + +      V  + +   +   +     +  ++F  T
Sbjct: 194 KKLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKRELLSQQIGEGNWQQVLIFTRT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++  + L +      A+ G  SQ  R+ AL   + G  R  +ATD+AARGID+  L
Sbjct: 254 KHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRALVATDIAARGIDIDKL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWE 370
             V++ EL + PE+ +HR GRT RAG++G ++ ++      + R  E+L  + ++  V+ 
Sbjct: 314 PHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLRDIEKLLGK-DIEKVYL 372

Query: 371 PA----PSVEA 377
           P     PS++A
Sbjct: 373 PGFEVDPSIKA 383


>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 479

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 179/338 (52%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT +F L +   LL    +  
Sbjct: 19  ISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILHRLLQNRIKPQ 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S  + L ++PTREL+ Q+            +  A+ IGGV + R+ R + +G  ++V 
Sbjct: 79  PKSCRV-LVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQVRSVMHGVDVMVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P KR+ L+FSAT+ 
Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPVKRQTLLFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    +D  RV +         I  R + V  + +   +  +L+      A++F
Sbjct: 198 KDIAELANQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAHLAQLLKQEPVNRALIF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  +ATD+AARGID+
Sbjct: 258 TRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTLVATDIAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  V++ +L + PE  +HR GRT RAG +G ++ ++
Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLV 355


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 175/332 (52%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L  +DVL  AQTG+GKT AF L +   L     R + A 
Sbjct: 23  AVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQRLFQNKKRVA-AK 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +P  L + PTRELA+Q+G           +   V  GGV    +   +  G  +++ TPG
Sbjct: 82  SPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVAAIARGVEVLIATPG 141

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +N+  ++  VLDEAD MLD+GF  D+  ++   PK+R+ L+FSAT+  A+
Sbjct: 142 RLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPKERQTLLFSATMPDAV 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +   DA R+ +  ++     I+ R + V   D+   + ++L        IVF  T
Sbjct: 202 VDLANSILTDAERIEVTPQSTTVERINQRVLFVERGDKRRLLADLLEDEAMARTIVFART 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R    L +      A+ G+ SQ  R  AL+  R+G  R  +ATD+AARGID+  +
Sbjct: 262 KHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRALVATDIAARGIDIDGI 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L + PE+ +HR GRT RAG  G +V
Sbjct: 322 SHVINFDLPNEPESYVHRIGRTARAGTDGSAV 353


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 181/339 (53%), Gaps = 15/339 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++GY N T +Q   +   L+ KD+L  AQTG+GKT AF + +   L          S
Sbjct: 15  ALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPILQHLYN--------S 66

Query: 74  AP-------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           AP        AL + PTRELA+Q+    +     T +   V  GGV   ++   L++G  
Sbjct: 67  APPKGRRSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVNRLKSGID 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I    + + H++  VLDEAD+MLD+GF  DI+ +L   P +R+ L FS
Sbjct: 127 VLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPHERQSLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L++    D  RV IA E      ++ +   V   ++   ++ +L      +
Sbjct: 187 ATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIYHVNKKNKTKLLIELLETKLLDS 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L +      A+ G  SQ  R  AL   ++G+ +  +ATD+AAR
Sbjct: 247 TLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGKIQTLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+ +L  V++ +L +  E+ +HR GRTGRAG  G++V
Sbjct: 307 GIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAV 345


>gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336]
 gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 419

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 192/341 (56%), Gaps = 7/341 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ +A+ E+G+   T +Q   L   L+ +D+   AQTG+GKT+AF  A    LL +N+ 
Sbjct: 18  RIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNN- 76

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +  P AL +APTREL VQ+  +  +L   TG+   +  GG    ++ + +  G  I+
Sbjct: 77  INSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDIL 136

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFS 186
           +GT GR+ D+++   + + +++ VVLDEAD M DLGF  DI ++L     P++R  ++FS
Sbjct: 137 IGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+S  +  LA  +  D   V I  E  Q +    R  L   S++D    ++ +L     
Sbjct: 197 ATLSYKVRELAFEHMNDPQYVEI--EPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWP 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         L+    +V  L+G++ Q++R + L+   DG   V +ATDVA
Sbjct: 255 ERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDVLVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 315 ARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISI 355


>gi|224067972|ref|XP_002302625.1| predicted protein [Populus trichocarpa]
 gi|222844351|gb|EEE81898.1| predicted protein [Populus trichocarpa]
          Length = 758

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 130/391 (33%), Positives = 202/391 (51%), Gaps = 21/391 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70
           + ++  GY  +T VQ A L   L+ KDVL  A+TG+GKTVAF L     ++    +DR  
Sbjct: 303 KGINHAGYEKMTVVQAATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPHDRDQ 362

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
                L L + PTRELA Q   E +  L     + V V IGGV +  E++ +Q N   I+
Sbjct: 363 KRPPILVLVVCPTRELATQAATEAKVLLKYHPAIGVQVVIGGVRIALEQKSMQANLCQIL 422

Query: 129 VGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+ LMF
Sbjct: 423 VATPGRLKDHIENTAGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIAAIPKQRQTLMF 482

Query: 186 SATISPAITTLAKN-YQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+   +  +  +  ++D   +N   E  +  HS +    V+  L  +   +  IL+ H
Sbjct: 483 SATVPEEVRQICHSALKRDHEFINTVQEGAEDTHSKVRQMHVVAPLDKQFPFLYAILKDH 542

Query: 243 GAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            A +     IVFC+T        ++L E    +  +    +Q  R+      R  ++ + 
Sbjct: 543 MADDPDYKVIVFCTTARVTGLVARLLGELNLNIREIHSRKAQTYRTRVSDEFRKSKSLIL 602

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G++G  + ++        E 
Sbjct: 603 VTSDVSARGVDYPDVTLVIQVGLPASREQYIHRLGRTGRKGKEGEGILLLAP-----WEE 657

Query: 359 LFREA--NVSVVWEPAPSVEAIRERDAQRIL 387
            F     ++ +   P PS++   ++  +R L
Sbjct: 658 FFLSTVKDLPITKAPVPSIDPDTKKKMERAL 688


>gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
          Length = 442

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 63  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 116

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 117 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 176

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 177 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 236

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 237 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 296

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 297 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 356

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 357 NYDLPNNRELYIHRIGRSGRYGRKGVAI 384


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 180/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+  +  
Sbjct: 12  ILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKGPKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+   AL + PTRELA Q+   +        +  AV  GGV V+ + + +  GA I+V 
Sbjct: 71  -ANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRMCKGADILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FSAT S
Sbjct: 130 TPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V ++++  N     ++       +  +   +V + +    +  +VF
Sbjct: 190 AEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLAKEGNWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+
Sbjct: 250 MRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 PQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLV 347


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 189/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1]
          Length = 380

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114
             +LL    + D       P AL +APTRELA Q+  +   L  +   +  +CI GG   
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124

Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+
Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184

Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
              P   +R+ L+FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++
Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  IL     K  I+F + +  V R    L  H  +V  LSG+++QQ+R   LQ  +
Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N
Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363


>gi|226366440|ref|YP_002784223.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244930|dbj|BAH55278.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 645

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/391 (33%), Positives = 200/391 (51%), Gaps = 20/391 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +P  + +AL+ R  + + S  +A+  PD L   +VL  AQTGSGKT+AFGL + + L  
Sbjct: 38  GLPAPLVQALA-RNSITVPSPIQALSVPDALAGTNVLGRAQTGSGKTLAFGLPMLARLAR 96

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G
Sbjct: 97  HEDRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFTKQVDQLRRG 155

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+
Sbjct: 156 VDILVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   + +L + +  D V+ +          +++  +LV    +DN +  I    G 
Sbjct: 216 FSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEIGAREG- 274

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+      T  L        AL G  +Q +R+  L+  ++GR  V +ATDVA
Sbjct: 275 -RTIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVA 333

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R   RL   A 
Sbjct: 334 ARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAG 393

Query: 365 V---------------SVVWEPAPSVEAIRE 380
           V               S+    APS E +R+
Sbjct: 394 VDATAVPVTPGSEKLASITGAKAPSGEPVRD 424


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 190/341 (55%), Gaps = 4/341 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL+E+GY   T +Q+  +   L  +D+L  AQTG+GKT AFGL L   L  A  +  +  
Sbjct: 15  ALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLLQHLGTASQEVRTGP 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P AL +APTRELA QV   L   Y+K   + + CI GGV +  +   L+ G  ++V  
Sbjct: 75  RKPRALILAPTRELATQVHDSLRG-YSKYLRIPSACIYGGVGMGNQLDILRRGVDLLVAC 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+ R+ L+FSAT  
Sbjct: 134 PGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQNRQTLLFSATFE 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  + ++  ++ +  +N     I +R   V    + + ++++L     +  +VF
Sbjct: 194 DNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLHLLAQDSREQTLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +ATD+AARGID+
Sbjct: 254 ARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVLVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+
Sbjct: 314 NELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQD 354


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    + R  
Sbjct: 366 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++  A       +L G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ-DAQSLHGDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 583


>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
 gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
          Length = 454

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
           Ech1591]
 gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 455

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 189/371 (50%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L   LL E    +   
Sbjct: 15  AVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ-LLNERPVLAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  I++ TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S +  +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +   N     +      V    +   + +++  H  +  +VF  
Sbjct: 194 IKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHDWRQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+  
Sbjct: 254 TKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373

Query: 369 --WEPAPSVEA 377
             +EP P+++A
Sbjct: 374 PGYEPDPTIKA 384


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 189/337 (56%), Gaps = 13/337 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  +L  +           AL
Sbjct: 45  GFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 99  ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +  D +R+ +  +      I  +   VA+ DR+    + ++++        A++FC+TR
Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLIDLYDTLTITQAVLFCNTR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + 
Sbjct: 276 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 336 LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 372


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
 gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498567|gb|EFB40895.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 399

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 194/362 (53%), Gaps = 9/362 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL +  +   + +Q+A +   L++KD++  A+TGSGKT A  + +        DR 
Sbjct: 12  TILKALEKLKFSEPSPIQKAAIPLILQKKDLIALAKTGSGKTAACAIPIC-------DRV 64

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              S  + AL + PTRELA+Q   E + + A+ GV      GG     ++  L++G  ++
Sbjct: 65  DVNSNSVQALIVVPTRELALQYATETQKIGAEKGVKTFALFGGEDAAMQQSKLKHGVQVL 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + +++SH++ ++LDEADEML +GF DD+EFI+     + + L+FSAT
Sbjct: 125 VVTPGRLIDFVYSRQIDLSHVETLILDEADEMLSMGFYDDLEFIIQCLVHEHQTLLFSAT 184

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  +AK + +  + V++  E+     I++  +     ++++ ++ +++      AI
Sbjct: 185 MPKQIRDIAKKHMQSPLEVSLIGEDATPDMIEHHFLYCRYHEKEHNLIELIKTQTPTKAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +FCS+R    + T VL + L + +  L   LSQ  RS      R  + ++ +ATDV +RG
Sbjct: 245 IFCSSRQECEKVTYVLRKQLHETIDFLHAGLSQDIRSAVTNKFRTNKIQLLVATDVVSRG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D   +  V    L+ + +  +HRSGRTGR  + G  + ++ Q   R   RL +      
Sbjct: 305 LDFSSVSHVFIYHLADDLDLYIHRSGRTGRYEKAGTVITLVTQRELRTLNRLLKVLKKEP 364

Query: 368 VW 369
            W
Sbjct: 365 NW 366


>gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 193/370 (52%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFRE--ANVSVV 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    ++++
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIL 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 196/358 (54%), Gaps = 19/358 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72
           ALS+  + + T +Q+  + P +  +DVL  AQTGSGKT  F L +L     A+ +R    
Sbjct: 15  ALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLHRNKRAQGNR---- 70

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +    L ++PTRELA Q+ R      ++L ++T     + +GG  + R+   L+    +V
Sbjct: 71  TRHQILVLSPTRELAGQIERSAREYGKYLRSRT----VLLVGGTDMRRQIDFLRRPWDLV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DH++   +N+SH+  VVLDEAD MLD+GF  D+E IL +   +R+ L+F+AT
Sbjct: 127 IATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQTLLFTAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
           +   I  L K YQKD V + + + +     ID   V ++   +   ++  +         
Sbjct: 187 LPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTILTEPQTTEG 246

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+         L    F   AL G+ SQ +R+  L   R G+ R+ +ATDVAA
Sbjct: 247 QTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLF 360
           RG+D+  +  VI+ +L  +PE+ +HR GRTGRAGR G ++ F  P  +N+ R  ERL 
Sbjct: 307 RGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRDIERLL 364


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 13/342 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72
            + + G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L AL +    E D     
Sbjct: 36  GIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVKTTERD----- 90

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L ++PTRELA Q  +    L     V V  C+GG  +  + R L+ G HIV GTP
Sbjct: 91  --PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVHIVSGTP 148

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+   I  + L+  HLK +VLDEADEMLD GF++ +  I    P   + ++ SAT+   
Sbjct: 149 GRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVSATMPNE 208

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIV 249
           I  +  N+  +  RV +  +      I  +   VA+       + + ++        A++
Sbjct: 209 ILEMTNNFMNNPFRVLVKRDELTLEGI--KQFFVAVEKEQWKFDTLCDLYDTLTITQAVI 266

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T  + E  F VV++ G++ Q+ER   +Q  R G+ARV I TD+  RG+D
Sbjct: 267 FCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGLD 326

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  + LVI  +L +N E  +HR GR+GR GRKG+++  + ++
Sbjct: 327 VQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKED 368


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 200/363 (55%), Gaps = 10/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q I + +   G+   T VQ+  +   L+++D++V A+TGSGKT AF + +   LL  
Sbjct: 6   SLDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQHLLTH 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P S   AL + PTRELA Q+ ++ + L   TG+   +  GG     +    +   
Sbjct: 66  K---APNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAALFRKNP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++ TPGRL DH++ K   +  ++  +LDEAD MLD+GF +D+  I +  S   K + L
Sbjct: 123 EIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKAKPQTL 182

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241
           +FSAT+    +  + K  Q D   + + S   +HS+I+   +L         I+  +L  
Sbjct: 183 LFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILTWLLSN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AI+F +T+    +    L+ H  +V  L G+++Q ER++ +  MR+GR +V +AT
Sbjct: 243 EEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFKVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358
           DVAARG+D+  ++LVI+ +++ + ++ +HR GRTGRA   G ++ +I     N++   ER
Sbjct: 303 DVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLKAAIER 362

Query: 359 LFR 361
             R
Sbjct: 363 YLR 365


>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
 gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
 gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
 gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
 gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
 gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
 gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
 gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
 gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 465

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L+ +D++ SAQTG+GKT  F L L   +L+++ + +   
Sbjct: 15  AVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQ-ILSQDTQPAKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 74  RPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMMKLRGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +   V +A  N     +      V    +   +  ++  H  +  +VF  
Sbjct: 194 IKELANKLLTNPASVEVARRNTASEQVAQSVHFVDKRRKRELLSQLIGTHNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 254 TKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     +  
Sbjct: 314 LPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLLRDIERLLKREIPRIAI 373

Query: 369 --WEPAPSVEA 377
             +EP PS++A
Sbjct: 374 EGYEPDPSIKA 384


>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 560

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 190/347 (54%), Gaps = 5/347 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + +   ++E GYV+ T +QE  +   L  +DV+  AQTG+GKT +F L +  
Sbjct: 106 VFEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMD 165

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +   A  P +L + PTRELA+QV            +  A+ IGG S+  +R  
Sbjct: 166 ILAGSRAK---ARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDV 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D      + ++  K +V+DEAD MLD+GF  D+E I+   P  R
Sbjct: 223 LDKGVDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLR 282

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  LA  + ++   +++++     + I      V   D+  A+  ++R
Sbjct: 283 QTLFFSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLAFVQPEDKRRALRRLIR 342

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NA++FC+ +  V    K L++H F+  AL G+L Q  R   L+  + G  ++ + 
Sbjct: 343 SQDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVC 402

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +DVAARGID+  L  V + ++    E+ +HR GRTGRAGR+G +  +
Sbjct: 403 SDVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTI 449


>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
 gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
 gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|118469993|ref|YP_885922.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118171280|gb|ABK72176.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 460

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/359 (35%), Positives = 182/359 (50%), Gaps = 3/359 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G      +Q A L   L  +DVL   +TGSGKT AF L L + L A +
Sbjct: 12  LPAELVSTLAANGVTTPFPIQAATLPDSLNGRDVLGRGRTGSGKTYAFLLPLVARL-ATS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A  P A+ +APTREL  Q+   L  L A TG+      GGV    +   L+ G  
Sbjct: 71  GTPRDAGKPRAVILAPTRELVTQIEASLAPLAAATGLRTVNIFGGVGAGPQIAALRRGVD 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL DH++ +  ++S ++  +LDEAD M DLGF   ++ +LD +PK  + L+FS
Sbjct: 131 IVIACPGRLEDHVQSRHADLSSVEVTILDEADHMADLGFLPGVKRLLDRTPKHCQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K Y  D V  ++ S     S + +  + V  + R N + ++    G   
Sbjct: 191 ATLDAGVDVLVKRYLHDPVVHSVDSAQSPVSAMVHHVLHVDNAARINVVADLAAAPG--R 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ L       V L G LSQ  R+  L    DG A V +ATD+AAR
Sbjct: 249 TIVFARTKHGAKNLTRQLNSRGISAVELHGNLSQNARTRNLTAFSDGSATVMVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI + D+ LV+HA+     +  LHRSGRT RAG +G  V ++          L R+A V
Sbjct: 309 GIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLMLDAQVHDVRNLTRKAGV 367


>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1]
          Length = 470

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 195/347 (56%), Gaps = 19/347 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ +  +   T +Q   L   L+ +D++  AQTGSGKT AF + +   L      + 
Sbjct: 78  ILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPILQALWEAQTPY- 136

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A  +APTRELA Q+    + L    G+  +  +GG+ +  + ++L    H++V 
Sbjct: 137 -----FACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQAKELMRKPHVIVA 191

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL+  P++R+  +FSAT+
Sbjct: 192 TPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIPRERKTYLFSATL 251

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSD--RDNAIVNILRYHGAKN 246
           +  +  L +    D V++ +   N ++S +D     L+ + D  ++  ++ +L  +  K+
Sbjct: 252 TSKVEKLQRASLIDPVKIAV---NDKYSTVDTLIQTLMVVPDGYKNTYLIYLLNEYVGKS 308

Query: 247 AIVF---CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            IVF   C+    V+   ++L    F  + L G+L+Q +R  AL   + G  ++ +ATDV
Sbjct: 309 VIVFARTCAHAQKVALLARILG---FSAIPLHGQLTQAQRLGALNKFKSGDKQILVATDV 365

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+P ++LV++ ++ ++ +  +HR GRT RAGR G SV ++ Q
Sbjct: 366 AARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQ 412


>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 660

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 232/448 (51%), Gaps = 32/448 (7%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G  NL  +Q    +  +   +++  A+TG GKT+AF L +   LL    +  P  A
Sbjct: 110 LKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVPNRA 169

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  + + PTRELA QV  E E L      +  VCI GG    ++    ++G  IV+GT G
Sbjct: 170 PRVICVTPTRELARQVTTEFEKL---DTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGTTG 226

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK---KRRMLMFSATIS 190
           R+ DHI    L  ++ + ++LDEAD ML++GFR+DI+ I D++ K   K ++L+FSATI 
Sbjct: 227 RIMDHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSATIP 286

Query: 191 PAITTLAKNY-QKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             +  +A  Y  K    VN+   S+++   D+ + A+      R   + ++L  +G +NA
Sbjct: 287 KWLHEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQNA 346

Query: 248 --IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +  + V  E       L G+++Q +R   ++  RDG+ R+ IATDVAA
Sbjct: 347 RTIIFAETKKDCNELS-VHPEIKQDCHVLHGDIAQAQRETTMKAFRDGQIRLLIATDVAA 405

Query: 306 RGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+ +++LVI++E        ++ +  +HRSGRTGRAG+KG+ + +     +   + +
Sbjct: 406 RGLDM-NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYTPRQKELLDLI 464

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEKKMVDVLLAKHDPE 414
            R+     +    PS E + +  A++  +     DP+ +   +    +  +  L  H+P+
Sbjct: 465 ERKIGNKFIMRDQPSQEELIKVSAEKAFKSMDQVDPVMIAIFE----EKAEEYLENHEPK 520

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSG 442
           K  A  L         P    P SL+SG
Sbjct: 521 KALAVALACITGHATPPR---PHSLMSG 545


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YSVTECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ ++    + +  N  V+ E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKFYN--VIIEELPS 407


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 14/355 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL ++G ++   +Q   L   L  +D++  A+TG+GKT+ F + +   ++
Sbjct: 31  FDVEPEIVA-ALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPILHDII 89

Query: 64  AENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              D        +  P AL I PTRELA QV  E+          +    GGV    +  
Sbjct: 90  GPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFDSQIE 149

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D +    L +  ++ +V+DEADEMLD+GF  D+E ++   P  
Sbjct: 150 ALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQIPPH 209

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDN 233
           R  ++FSAT+   +  LA+ Y  Q   +R    +++    RQ   + YR   V   ++  
Sbjct: 210 RHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYR---VHSLNKTE 266

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+       I+F  T+ +  R +  LAE  F   A+ G+L Q  R  AL+  R G
Sbjct: 267 VIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRHG 326

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG KG ++  I
Sbjct: 327 KVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFI 381


>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
 gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
          Length = 454

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
          Length = 449

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 10  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 70  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 130 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 190 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 250 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 310 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 369

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 370 GYEPDPSIKA 379


>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
 gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
          Length = 446

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72]
          Length = 391

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSV 114
             +LL    + D       P AL +APTRELA Q+  +   L  +   +  +CI GG   
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCREL-TRFSQLYNLCITGGSDF 124

Query: 115 HRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+
Sbjct: 125 DKQLEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIV 184

Query: 174 DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
              P   +R+ L+FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++
Sbjct: 185 RHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREK 244

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  IL     K  I+F + +  V R    L  H  +V  LSG+++QQ+R   LQ  +
Sbjct: 245 TSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRH-HKVTMLSGDVAQQKRERYLQRFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N
Sbjct: 304 DGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEN 363


>gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
          Length = 439

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score =  194 bits (492), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 188/343 (54%), Gaps = 13/343 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           Q + +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   L+ +   
Sbjct: 10  QDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIEKPKS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF+      AL +APTRELA Q+   +      T V      GG  +  + + L+ G 
Sbjct: 70  KSRFNVR----ALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKRLEQGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL +H+    +++++L+ +V DEAD MLD+GF   I  IL+    K + ++F
Sbjct: 126 DILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT SP + +LA +      R+ +  EN   S  D  A +V   D D     +    G K
Sbjct: 186 SATSSPQMNSLASDILHKPQRITVTPEN---STADTIAHVVYPVDEDRKREMLSELIGKK 242

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    +VF + + S ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+
Sbjct: 243 NWKQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATE 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++
Sbjct: 303 VAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAI 345


>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
 gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
          Length = 454

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 48  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 102 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 162 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 222 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 342 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 396


>gi|146104251|ref|XP_001469775.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503545|emb|CBZ38631.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 527

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 209/390 (53%), Gaps = 12/390 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   Q +  A ++ G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LLA+  R +P  +   L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLAQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H+VVGTPGR+ DH+   KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K   +D V + +  +N     +    +    +   + +   
Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           + ++  V  V  P      + E + Q +LQ
Sbjct: 409 IEQQTGVKCVEYP-----FLPESEVQLVLQ 433


>gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
          Length = 453

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
 gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
          Length = 453

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 454

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSNDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
          Length = 454

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
 gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           E24377A]
 gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
 gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
 gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357]
 gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
          Length = 454

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
          Length = 433

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis]
 gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis]
          Length = 521

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 135/392 (34%), Positives = 195/392 (49%), Gaps = 50/392 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L++ G   +T +QE  + P L  KD + +A+TGSGKT AF L +   L  E     
Sbjct: 18  LAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALPILEKLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV 
Sbjct: 73  PVSH-FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240
                   K++ K++    I+    E  Q SD+      + R +L A  DRD  ++  LR
Sbjct: 192 --------KDFMKESSIFPISKDLMEWSQESDVATVETLEQRYLLCADYDRDMVLIEALR 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +N     ++F +T+      +  LA    + V L G + Q+ER  AL   +    R
Sbjct: 244 KFREENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352
             IATDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+  S+F  P+++  
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363

Query: 353 ------------------QRRAERLFREANVS 366
                             QR  ER+F + NV+
Sbjct: 364 LGAIEAEINCKLTEHPIDQRMVERIFMQVNVT 395


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 186/345 (53%), Gaps = 8/345 (2%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FEN   +P+ I  A+++ GY   T +Q  +L   L  +D++  AQTG+GKT AF + +  
Sbjct: 3   FENYRILPE-IKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIPVLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +E      + +   L + PT ELA Q+    + L   T + +    G      + + 
Sbjct: 62  LLASEKK----SKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQIKA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  ++V TPGR+ D      L++  +K ++LDEAD MLDLGF  DI  +    PK+ 
Sbjct: 118 LQKGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIPKRH 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  LA +  K+A+R+ I+ ++    +ID+  V+V++ D+   +  ++ 
Sbjct: 178 QTLFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFFLERMIT 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  IVF  T+    R    +A    + V L  + S  ER  AL+  + G   V IA
Sbjct: 238 ENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWVLIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDV+ARG+D+P +E VI+ +L    EN +HR GRTGR  +KG +V
Sbjct: 298 TDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAV 342


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 199/366 (54%), Gaps = 7/366 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 161 VKLFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 219

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   ++   R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 220 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 280 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 339

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + +LA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 340 DRQTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 399

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L+    G+K  ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+
Sbjct: 400 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRS 458

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +  + 
Sbjct: 459 PIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKF 518

Query: 356 AERLFR 361
           A  L +
Sbjct: 519 ARELIK 524


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 180/347 (51%), Gaps = 2/347 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + E+L+  G    T +Q   + P L   DVL  AQTG+GKT AFGL L   L A  
Sbjct: 13  IAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPLLQRLAASK 72

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                +S  + AL + PTRELA QV   L      + + V V  GG S+  +++ L+ GA
Sbjct: 73  TDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQKQHLRGGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH   K L + +++ +VLDEAD MLD+GF  DI+ +L    + R+ L F
Sbjct: 133 DVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLNRARQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA     + + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDQKIKALAYRMMHEPIEVQVTPANTTADTVSQMVYPVDKKRKSELLAYLIGSRNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + L     +  +++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           RGID+  LE V++ +L    E+ +HR GRTGRAG+ G++V ++ PQ 
Sbjct: 313 RGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQE 359


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  N  VV E  PS
Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN--VVIEELPS 407


>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
 gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
 gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
 gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
 gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           IHE3034]
 gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
 gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 453

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 449

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 5/352 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L   L A+ D+  P   
Sbjct: 25  LDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQRL-AQQDKARPGH- 82

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L +APTRELA+Q+   +E L     + V    GGVS   + + L+ G  +VV  PGR
Sbjct: 83  PIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGR 142

Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L D + G+GL ++  ++  VLDEAD M DLGF   +  IL ++P++ + L+FSAT+   +
Sbjct: 143 LLD-LMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILRATPQRGQRLLFSATLDNGV 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TL K +  + ++ ++         + +R  +VA     + IV  L   G    I+F  T
Sbjct: 202 DTLVKEFLHNPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRL-ASGEGQRILFTRT 260

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L +     V L G +SQ+ R  A++    G+  V +ATD+AARGID+  +
Sbjct: 261 KHLARRLARKLVQAGIPAVELQGNMSQKARERAMRAFSTGQVHVMVATDIAARGIDVSGV 320

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L ++A +
Sbjct: 321 ELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLLKKARI 372


>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
 gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
          Length = 439

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 179/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++  Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  + +  S 
Sbjct: 16  LADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQVASNSV 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV +  +       +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  S L+ ++LDEAD MLDLGF  +++ +  + PKKR+ L+FSAT S AI 
Sbjct: 135 LLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKRQTLLFSATFSDAIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A    +D + V ++  N     +    + V    +    +++L+       +VF  TR
Sbjct: 195 QMAGELLRDPLSVEVSPRNAAAKTVKQWLIPVDKKRKSELFLHLLQVKRWGQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L        ++ G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 KGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L  N E+ +HR GRTGRAG  G ++ ++
Sbjct: 315 LVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLV 348


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 178/337 (52%), Gaps = 1/337 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +   L + + R
Sbjct: 11  QPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHRL-SLDSR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L ++PTRELA Q+                V  GGV++ R+ R +  G  I+
Sbjct: 70  RAPRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQERAIAPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P KR+ L FSAT
Sbjct: 130 VATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPAKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA  Y  + V+V +         +D + +      +   + ++LR    +  +
Sbjct: 190 MPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIERVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AARGI
Sbjct: 250 VFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ +L + PE+ +HR GRT RAG +G ++
Sbjct: 310 DVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAI 346


>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 416

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 181/331 (54%), Gaps = 5/331 (1%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L+  DVL  AQTGSGKT+AF L + + +L   D+  P +A  AL + PTRELAVQ+   +
Sbjct: 42  LKGHDVLGIAQTGSGKTLAFSLPILNRILTLGDKRHPKTAR-ALILVPTRELAVQIEEAI 100

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             +   T +   + +GG+S   + + +  G  I++ TPGRL D IR K +++S  +  VL
Sbjct: 101 SAVAKGTHLSTCLILGGMSRLIQIKRMAKGVDILIATPGRLMDLIRSKYIDLSQSRFFVL 160

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD MLD+GF  D+  I +   KK +  +FSAT+   +  LA N  K  +++ +  +  
Sbjct: 161 DEADRMLDMGFISDVRQIANFLHKKCQTALFSATMPKEVNVLADNLLKKPIKIEVVPQGT 220

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
              +I      V+ S++ + +  +L      + IVF  T+       + L +  + V  +
Sbjct: 221 TAVEITQVLYCVSTSEKKSVLSKLLTNPALASVIVFIRTKHGADSVARSLKKTGYSVATI 280

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  SQ  R  AL+  R+G  R+ +ATD+ ARGID+P +  VI+ +L  N E+ +HR GR
Sbjct: 281 HGNKSQNARQCALKDFREGLVRILVATDIVARGIDIPGISHVINYDLPDNAESYVHRIGR 340

Query: 335 TGRAGRKGMSVFVIPQNMQR----RAERLFR 361
           TGR G  G ++ +  + ++R      ERL R
Sbjct: 341 TGRNGASGDAITLFDEKVERARLSAIERLIR 371


>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
 gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
          Length = 449

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 10  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 70  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 130 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 190 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 250 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 310 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 369

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 370 GYEPDPSIKA 379


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY + T +Q+  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK---NAIVF 250
             +   +  +  ++ ++      + +    V  +    +   +       AK   NAI+F
Sbjct: 192 RRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLREAKELKNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F   AL G++ Q  R+ +L   R G   + +A+DVAARG+D+
Sbjct: 252 CNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  V++ ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 312 PEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIV 349


>gi|301348040|ref|ZP_07228781.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB056]
 gi|301596797|ref|ZP_07241805.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB059]
          Length = 344

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 191/338 (56%), Gaps = 8/338 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  RF     P AL +APTRELA+Q+  + + L   + + +   +GGV   ++++ L 
Sbjct: 69  PVQEQRFR--GEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLD 126

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
            N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K  
Sbjct: 127 ANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT +  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +IL
Sbjct: 187 RQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDIL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + I
Sbjct: 247 REEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNIMI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           ATDVA RGI +  +  V++  L    ++ +HR GRTGR
Sbjct: 307 ATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGR 344


>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 605

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L  +
Sbjct: 7   NLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRL-TQ 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                PA    AL + PTRELA QV   L        V   V  GGV ++ +   ++ G 
Sbjct: 66  GGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   P+ ++ L+F
Sbjct: 126 DILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA    K+   + +   N     I      V    +   +++I++ H   
Sbjct: 186 SATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQEHNWS 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +ATD+AA
Sbjct: 246 QVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++
Sbjct: 306 RGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLV 348


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 185/335 (55%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ GY   T +Q  ++   +  +D++  AQTG+GKT +F L + + L+ EN    
Sbjct: 13  ILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNRLIEENRPTH 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +   AL ++PTREL+ Q+   +        V   + +GGV    + R L  G  ++V 
Sbjct: 73  PKTC-RALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQIRALSKGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   + +S  K ++LDEAD+MLDLGF   I  I+   P KR+  + SAT+ 
Sbjct: 132 TPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPNKRQTALLSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+    D   V++A  +R    I+   VL+    + + ++ ++     + AIVF
Sbjct: 192 KPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKESKKDLLLELMSDRAVERAIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L ++  +  A+ G  SQ +R  AL   + G  ++ +ATD+AARGID+
Sbjct: 252 SRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKILVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  V++ +L + PE+ +HR GRT RAG+ G++V
Sbjct: 312 DNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAV 346


>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
          Length = 456

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 188/345 (54%), Gaps = 7/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67
           +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +   LL     +E  
Sbjct: 22  KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81

Query: 68  RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P  A  A  ++PTRELA+Q+  + E L A   +  AV  GG+   ++   L    H
Sbjct: 82  KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRMQQTIALGKRPH 141

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  IL+  P++R+  +F
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPRERKTFLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V++  AS+      +  +   VA   +D  +V IL      
Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T         VL    F+ + +SG+++Q +R  AL   + G   + + TDVA+
Sbjct: 262 TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q
Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/338 (35%), Positives = 193/338 (57%), Gaps = 13/338 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94
           +D++  A+TGSGKT+AFG+     +L +N +    S    P  L ++PTRELAVQ+   L
Sbjct: 26  RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 85

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                  G+      GG S   +   +++G  IV+GTPGRL D I    L +S +  VVL
Sbjct: 86  REAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVL 145

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213
           DEAD MLD+GF + + FIL ++ K R+M+MFSAT    +  LA+ +   + ++V I S +
Sbjct: 146 DEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVD 205

Query: 214 RQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHL 268
              ++ D   ++  L +  RD  ++ +L +YH ++    +VF   +    R  + L +  
Sbjct: 206 LA-ANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRG 264

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           ++ V++ G  +Q ER+ +L + ++G   + +ATDVAARG+D+PD+E+VI+       E+ 
Sbjct: 265 WKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 324

Query: 329 LHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           +HR GRTGRAG+KG++  F  P N     E   + REA
Sbjct: 325 VHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 362


>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 487

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 18/383 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +    AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 21  NLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIERLSGA 80

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  PA+A     P AL +APTRELAVQ+  EL+       V  A+ IGGV +  +   
Sbjct: 81  ATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGAQSAA 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   PK R
Sbjct: 141 LRD-HEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++ +L 
Sbjct: 200 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLMALLE 259

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ RV +A
Sbjct: 260 DDDL-STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAE 357
           TD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G  S FV P+ +   R  E
Sbjct: 319 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEELDLLRDIE 378

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
           RL R         P P  E  RE
Sbjct: 379 RLTR--------APIPRAEVPRE 393


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score =  194 bits (492), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD--YALLQCQAL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  + QR    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVV--EELPS 406


>gi|312139811|ref|YP_004007147.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889150|emb|CBH48463.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 700

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 128/390 (32%), Positives = 200/390 (51%), Gaps = 19/390 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ +  AL+ R  + + S  +A+  PD +  K++L  AQTGSGKT+AFGL + + L   
Sbjct: 8   LPEPVVAALA-RNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARH 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G 
Sbjct: 67  EDRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 126 DILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + +  +    +        + +D+  +LV   D+D  +  I    G +
Sbjct: 186 SATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAVLAEIASREGGR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+      T+ L E      AL G  +Q +R+  L+  + GR  V +ATDVAA
Sbjct: 246 -TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV+H +   + ++ LHR+GRT RAG  G+   ++  N +R   RL   A V
Sbjct: 305 RGIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGV 364

Query: 366 SVVWEP---------------APSVEAIRE 380
           +    P               APS E +R+
Sbjct: 365 NATAVPVFPGSEELATITGAQAPSGEPVRD 394


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 192/373 (51%), Gaps = 4/373 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ +A++  GY   T VQ A +   L   D+L +AQTG+GKT AF L     L +   
Sbjct: 10  PHIL-KAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQ 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P  L + PTRELA QV   +    A   V     +GG+  H + R L      
Sbjct: 69  --GPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDF 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + L++S L+ +VLDEAD MLD+GF DD++ I  +SP  R+ L+F+A
Sbjct: 127 IVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQTLLFTA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKN 246
           T+  A+  LA    ++  R++IA     H  I+ R  V   L  ++  + +++     + 
Sbjct: 187 TMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F +T+         L        AL G++ Q  R+  +  M+ GR R+ +ATDVAAR
Sbjct: 247 AIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N      R+ R    +
Sbjct: 307 GLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARIERYIGQT 366

Query: 367 VVWEPAPSVEAIR 379
           +     P +E  R
Sbjct: 367 LPEHHIPGLEPSR 379


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 187/355 (52%), Gaps = 4/355 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + N T +Q   +   L  +DV+  AQTGSGKT AF   +   +L + D   P   P+ L 
Sbjct: 320 FTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIVHILDQPD-LKPGDGPIGLI 378

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+  E +      G+ V  C GG S   + +DL+ GA IVV TPGR+ D +
Sbjct: 379 LAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLEQGAEIVVATPGRMIDLV 438

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +VLDEAD M D+GF   +  I + +  +R+ L+FSAT    I  LA++
Sbjct: 439 KIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQTLLFSATFKKRIEKLARD 498

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
              D +R+        + D+     ++A + + + ++  ++ +  + + ++F + +A+  
Sbjct: 499 VLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLITRLVEFMASGSVLIFVTKKANAE 558

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             +  L      V  L G++ Q +R+  +   +     + +ATDVAARG+D+P +  V++
Sbjct: 559 ELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVAARGLDIPHIRTVVN 618

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVWEP 371
            +++ + +   HR GRTGRAG KG +  ++    +  A  L R  E    VV EP
Sbjct: 619 YDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKEFAGHLVRNLEGASQVVSEP 673


>gi|294053581|ref|YP_003547239.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293612914|gb|ADE53069.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 373

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 204/368 (55%), Gaps = 12/368 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64
            +P  + E +S  G    T +Q  ++   L ++ D++  AQTG+GKT AFGL L +    
Sbjct: 10  GVPDDLVEGISALGIHEPTPIQTKVIPLLLEDQSDLIAQAQTGTGKTAAFGLPLLT---- 65

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
              +  P+   + AL +APTRELA Q+G++L     ++K  V V V  GG  +  +   L
Sbjct: 66  ---KVDPSKEGIQALIVAPTRELAKQIGKQLFRFTKFSKKKVFVEVTAGGDKIEIQAERL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q    IVV TPGRL D +    LN+  ++ +VLDEADEML +GFR ++  I   + ++R 
Sbjct: 123 QRPTQIVVATPGRLMDLLELNALNLESVQYLVLDEADEMLSMGFRAELAKIFKLTKRRRG 182

Query: 182 MLMFSATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +FSAT    +  LA  N   DA  + +A +   + +I++   + +  D+D  I++ L+
Sbjct: 183 TWLFSATFQDKVKRLAADNLSPDARMLKVAKKEVVNRNIEHSFAVCSREDKDEFILDYLK 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  ++F  T+A   R  +VL +    V  L G+LSQ++R   +++ +   ++V +A
Sbjct: 243 SKGTQRGMIFVRTKAGAIRLGEVLRDAGVPVGVLQGDLSQRDRDKVMRIFKRKESQVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI  +L    +   HR+GRT RAG++G+S+ +I    + +  +L 
Sbjct: 303 TDVAARGIDIEALAFVIQHQLPDAGQYYTHRAGRTARAGKRGVSLTLIEPKERSKITKLE 362

Query: 361 REANVSVV 368
           +E  ++ +
Sbjct: 363 QELGLNFM 370


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 10/379 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +       S
Sbjct: 20  TLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   ++     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D V V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + + + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSVEAIRERDAQR 385
             +EP+P    +RE ++ R
Sbjct: 380 KGFEPSP---VVREENSPR 395


>gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 439

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L   TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|115438621|ref|NP_001043590.1| Os01g0618400 [Oryza sativa Japonica Group]
 gi|75322035|sp|Q5ZBH5|RH25_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 25
 gi|54290854|dbj|BAD61515.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113533121|dbj|BAF05504.1| Os01g0618400 [Oryza sativa Japonica Group]
 gi|215695286|dbj|BAG90477.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618865|gb|EEE54997.1| hypothetical protein OsJ_02628 [Oryza sativa Japonica Group]
          Length = 594

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 24/355 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L A      D+
Sbjct: 139 KAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQ 198

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
             P+     L + PTRELA+QV  E + L  Y ++ + V V IGG  + +E+R +Q N  
Sbjct: 199 LRPSIN--LLVMCPTRELAIQVAVEAKKLLKYHRS-LGVQVVIGGTRLTQEQRSMQANPC 255

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DH+    G    +  +K +VLDEAD +LD+GFR DIE I+ S PK+R+ 
Sbjct: 256 QILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQT 315

Query: 183 LMFSATISPAI-----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           L+FSAT+   +       + KNY+   +      +   H+ +    ++  L    + + +
Sbjct: 316 LLFSATVPEEVRQISHIAMKKNYK--FINTVKDGDEETHAQVSQMFMIAPLDLHFSILYD 373

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +L+ H A++A    I+FC+T        ++L++    +  +    SQ  R+      R  
Sbjct: 374 VLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKS 433

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  + +++DV+ARG+D PD+ LVI   + ++ +  +HR GRTGR G++G  + ++
Sbjct: 434 RGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLL 488


>gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 509

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 184/351 (52%), Gaps = 8/351 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L           A
Sbjct: 18  LEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPILERLDINQ------KA 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ + PTRELA+QV   +       G+ V    GG S+ R+   L+ G H+VVGTPGR
Sbjct: 72  VQAIVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLRRGVHMVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L +  +K  VLDEADEML +GF DD+  IL  +P  R+  +FSAT+ P+I 
Sbjct: 132 VIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTALFSATMPPSIR 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCST 253
            L   + +    V +       + I+  A L+     +  A+  IL     + A++F  T
Sbjct: 192 MLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  L
Sbjct: 252 RRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVVATDIAARGLDVDQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
             VI+ +L  + E  +HR GRTGRAG++G ++ ++ Q  +RR ++ F   N
Sbjct: 312 SHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLV-QPFERRKQQTFERHN 361


>gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 189/344 (54%), Gaps = 15/344 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  +   +  T++  AIL      KD+L S++TGSGKT+AF L     +     R  P +
Sbjct: 2   AFDQATEIQRTAIPVAILG-----KDILASSKTGSGKTLAFLLPAMQRMY----RSKPFT 52

Query: 74  A--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  L + PTRELA QV  +L+ L A T    A+ +GG + + + + L+     VV T
Sbjct: 53  RRDPRVLILTPTRELAKQVFAQLKPLNAGTPYDAALIVGGENFNDQVKALRKDPMFVVAT 112

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS 190
           PGRL DH+  +   +  L+ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+ 
Sbjct: 113 PGRLADHLEHRSTYLDGLEMLILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLD 172

Query: 191 -PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAI 248
            P +  +A        R++I     +H DI  R +L        A++N IL        I
Sbjct: 173 HPEVVEMAHEMLNAPKRISIGHSAEEHKDITQRFILCDNLTHKEALLNKILETEDYNQMI 232

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +TRA   R TK L +   + VALSG L+Q +R++ +        ++ + TD+A+RG+
Sbjct: 233 IFTATRADTDRLTKELNDRKLKAVALSGNLNQTQRNSIMSQFERFCHKILVTTDIASRGL 292

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+ ++  VI+ +L  + E  +HR GRTGRAG KG ++ FV P++
Sbjct: 293 DISNVSHVINFDLPKHAEEYVHRVGRTGRAGNKGDAISFVGPKD 336


>gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
          Length = 444

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 194/371 (52%), Gaps = 8/371 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +   LL  +   +   
Sbjct: 15  AIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ-LLNNSPVQTKGR 73

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TP
Sbjct: 74  RPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMMKLRGGVDILVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L+  P KR+ L+FSAT S  
Sbjct: 134 GRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKRQNLLFSATFSDE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V V +A  N     I+     V    +   +  ++     +  +VF  
Sbjct: 194 IKNLASKLLHNPVSVEVARRNSASEQIEQFVHFVDKKRKGELLSFLIGSRNWQQVLVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +      A+ G  SQ  R+ AL   ++GR RV +ATD+AARG+D+  
Sbjct: 254 TKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEGRIRVLVATDIAARGLDIDQ 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV- 368
           L  V++ EL +  E+ +HR GRTGRA   G +   V V    + +  ERL +     V  
Sbjct: 314 LPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIERLLKREIPRVAI 373

Query: 369 --WEPAPSVEA 377
             ++P P+++A
Sbjct: 374 PGYDPDPTIKA 384


>gi|255537383|ref|XP_002509758.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549657|gb|EEF51145.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 771

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 190/361 (52%), Gaps = 36/361 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSP 71
           +AL+  GYV +T VQEA L+  L  KD LV A+TG+GK+ AF L A+ + L A++    P
Sbjct: 315 KALTTAGYVQMTRVQEATLSACLEGKDALVKAKTGTGKSAAFLLPAIEAVLKAKSSNVKP 374

Query: 72  ASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
             +P+  L + PTRELA Q+  E    L    G+ V   +GG     +++ L+ N   I+
Sbjct: 375 RVSPIYVLILCPTRELASQIAAEANAMLKYHDGISVQTLVGGTRFKDDQKRLEMNPCQII 434

Query: 129 VGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL DHI  KG   +++  LK ++LDEAD +LDLGFR D+E I+D  P++R  LMF
Sbjct: 435 VATPGRLLDHIENKGGLSVHLMGLKMLILDEADHLLDLGFRKDVEKIIDCLPRERHSLMF 494

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------YRAVLVALSDR 231
           SATI            K+  R++     R+H+ ID                +V+V     
Sbjct: 495 SATIP-----------KEVRRISQLVLKREHAFIDTVGLGSVETPSKVKQFSVVVPHELH 543

Query: 232 DNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              + + L+ H  +      IVFC+T    S    +L E    V  +     Q  R+   
Sbjct: 544 FQVVHHFLKEHILQTPDYKVIVFCTTGMVTSLMYTLLREMKMNVKEIHSRKPQLYRTRVS 603

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R+ R  + +++DV+ARG++ PD+ LVI   L ++ E  +HR GRTGR G+ G  + +
Sbjct: 604 DEFRESRRSILVSSDVSARGMNYPDVTLVIQVGLPTDREQYIHRLGRTGREGKDGEGILL 663

Query: 348 I 348
           +
Sbjct: 664 L 664


>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
 gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
          Length = 438

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 29/371 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + + + GY   ++VQ A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 387 LPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 446

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + F+    P A+ +APTRELA Q+  E +      G      +GG S+  +  +L+NG
Sbjct: 447 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 506

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I++ TPGRL D I  + L +     +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 507 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 566

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             + R+ +M++AT+ PA+  +AK Y +    V I +       +
Sbjct: 567 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 626

Query: 220 DYRAVLVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   VA  D+    +N +   G  A   IVF + + +     + +    F  V L G 
Sbjct: 627 EQRVEFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 686

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 687 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 746

Query: 338 AGRKGMSVFVI 348
           AG+ G+++  +
Sbjct: 747 AGKSGVAITFL 757


>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 453

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 125/340 (36%), Positives = 182/340 (53%), Gaps = 6/340 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E G+   T +Q   + P +  +DV+ SA TGSGKT AF L +   L+   DR  P 
Sbjct: 14  KALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQLI---DR--PR 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA Q+  +L  L   T +  A   GGVS+  +    + G  +++GTP
Sbjct: 69  GTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRRGVDVLIGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH R     ++ L+ +VLDEAD MLD+GF  DI  IL   P +R+ L FSAT+   
Sbjct: 129 GRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQTLFFSATMPAP 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+   ++   VNI       + I      VA   +   +V +L+    ++A+VF  
Sbjct: 189 IGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQELKAALLVALLKRDDIRDALVFTR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L     +   + G  SQ  R+ AL   + G+ RV +ATD+AARGID+ +
Sbjct: 249 TKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVATDIAARGIDVTE 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           L  V++ ++   P++ +HR GRT RA   G +  FV PQ 
Sbjct: 309 LGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQE 348


>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
          Length = 389

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL +  +   T +Q   L   L+ +D++  A TGSGKT AF L +   L  E       
Sbjct: 32  EALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQKLWEEPKGL--- 88

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  +APTRELA Q+ +++E L +  GV     +GG+    +   L    HIVV TP
Sbjct: 89  ---FACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATP 145

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +VLDEAD +LD+ F   I+ IL + P++R   +FSAT++ 
Sbjct: 146 GRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRERTTYLFSATMTT 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + VRV ++ +    S +    + + L  +D  ++ +       + I+F 
Sbjct: 206 KVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLANILAQNSIIIFT 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T     R + +L    F  V L G+LSQ  R  AL   + G  +V +ATDVA+RG+D+P
Sbjct: 266 RTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVASRGLDIP 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 326 HVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQ 364


>gi|213053471|ref|ZP_03346349.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427378|ref|ZP_03360128.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289823676|ref|ZP_06543288.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 416

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 188/338 (55%), Gaps = 12/338 (3%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-- 97
            +  A+TGSGKT AFGL L   +  +   F       AL + PTRELA QV  EL  L  
Sbjct: 2   CVCKARTGSGKTAAFGLGLLHRI--DVTLFQTQ----ALVLCPTRELADQVAGELRRLAR 55

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +     ++ +C GG     +R  LQ+  HI+V TPGRL DH++ + +++  L  +V+DEA
Sbjct: 56  FLPNTKILTLC-GGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEA 114

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +
Sbjct: 115 DRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPA 174

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            I+ +    +  ++ + +  +L  H   + +VFC+T+         L       +AL G+
Sbjct: 175 -IEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGD 233

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q++R   L    +G AR+ +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT R
Sbjct: 234 LEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTAR 293

Query: 338 AGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPS 374
           AG  G+++ F  P+  Q RA  L     + + W  AP+
Sbjct: 294 AGSSGLAISFCAPEEAQ-RANILSEMLQLKLNWLNAPA 330


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 174/325 (53%), Gaps = 6/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+A++   +  +DVL  AQTGSGKT+AFGL L + +   +++        AL I PT
Sbjct: 24  TEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLLNNIDQGSNKLQ------ALVIVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   L+ +     +      GG +   +++ L     I + TPGRL   I+   
Sbjct: 78  RELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLSTAPQIAIATPGRLLALIKSGE 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L ++   ++VLDEAD ++D+GF  DI+ I  + P KR+ L+FSAT+ P + + A+    +
Sbjct: 138 LELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQSLLFSATLPPELVSQAETLLSN 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             ++    EN     I+    LV    +  A++ +L  +     +VF   + +    TK 
Sbjct: 198 PKKITTHKENSVVEAIEETLYLVNKGSKAQALIALLNQNPWPQVLVFIGAKDNADALTKR 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +    V AL G  SQ+ER+ AL   ++G  RV IATDV ARGI +  L +VI+ EL  
Sbjct: 258 LNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLIATDVMARGIHIDQLPIVINFELPP 317

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    +HR GRT RAG  G ++ ++
Sbjct: 318 HAATYVHRVGRTARAGSTGCAISLV 342


>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 399

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 172/328 (52%), Gaps = 1/328 (0%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY   T +Q+  +   +   D+L  AQTG+GKT AF L + +     N     A +  +
Sbjct: 20  KGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKF-GRNKIDIKAKSTRS 78

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA Q+ + ++      G+   V  GGV    +   ++ G  I+V TPGRL D
Sbjct: 79  LILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLLD 138

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I    +N   L+  VLDEAD MLD+GF  D++ I+   PK R+ L+FSAT+   I  LA
Sbjct: 139 LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILA 198

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +    D  ++ I +E      ++     +  S++   + NIL     +  ++FC T+   
Sbjct: 199 EAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKYGA 258

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L +      +L    +Q  R  ALQ  +D   RV +ATDVAARGID+ ++ LVI
Sbjct: 259 DIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITLVI 318

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  L  +P N +HR GRT RAG+ GM++
Sbjct: 319 NYNLPEDPRNYIHRIGRTARAGKSGMAI 346


>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
 gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
          Length = 452

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|226305684|ref|YP_002765644.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184801|dbj|BAH32905.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 474

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/318 (38%), Positives = 172/318 (54%), Gaps = 8/318 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELE-- 95
           D++  A+TG GKT  FG+ L   ++ AEN        P AL I PTREL +QV R+LE  
Sbjct: 7   DLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVARDLENA 66

Query: 96  --WL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
             +L     G+ V    GG     +   LQ G  +VVGTPGRL D      L +  +  +
Sbjct: 67  SKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLILGKVGVL 126

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIA 210
           VLDEADEMLDLGF  DIE ++   P KR+ ++FSAT+   I TLA+ +  Q   +R   A
Sbjct: 127 VLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEA 186

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
             +  H             D+   +  +L+  G    ++F  T+ +  +    LAE  F 
Sbjct: 187 ESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFS 246

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           V A+ G+L Q  R  AL+  R+G+  V +ATDVAARGID+ D+  VI+ +   + +  +H
Sbjct: 247 VGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVH 306

Query: 331 RSGRTGRAGRKGMSVFVI 348
           R GRTGRAGR G++V ++
Sbjct: 307 RIGRTGRAGRTGIAVTLV 324


>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
 gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
          Length = 454

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELSIHRIGRSGRYGRKGVAI 378


>gi|229493377|ref|ZP_04387166.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
 gi|229319693|gb|EEN85525.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
          Length = 455

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70
           +AL + G  +   +Q   L   L  +DVL   +TGSGKT+AF + + S L  E    +  
Sbjct: 22  KALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   PL L +APTRELA Q+   LE L A   + V    GGVS HR+ + L+ G  IVV 
Sbjct: 82  PGR-PLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQALKAGVDIVVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D ++ K +++  ++  VLDEAD M DLGF   +  IL S+P+  + L+FSAT+ 
Sbjct: 141 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDGQRLLFSATLD 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K + K+ V  ++   N   + + +    V   +   A+V  L   G    I+F
Sbjct: 201 NGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKKALVEKL-ASGTGRRILF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L E     V L G LSQ  R   L     G ARV +ATDVAARG+ +
Sbjct: 260 MRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARVLVATDVAARGVHV 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            D+ELV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R+A + V 
Sbjct: 320 DDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAILMRKAAIKVT 377


>gi|226305824|ref|YP_002765784.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226184941|dbj|BAH33045.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 479

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70
           +AL + G  +   +Q   L   L  +DVL   +TGSGKT+AF + + S L  E    +  
Sbjct: 22  KALEDGGITSPFPIQIDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   PL L +APTRELA Q+   LE L A   + V    GGVS HR+ + L+ G  IVV 
Sbjct: 82  PGR-PLGLVLAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQHRQVQALKAGVDIVVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D ++ K +++  ++  VLDEAD M DLGF   +  IL S+P+  + L+FSAT+ 
Sbjct: 141 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILSSTPQDGQRLLFSATLD 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K + K+ V  ++   N   + + +    V   +   A+V  L   G    I+F
Sbjct: 201 NGVDKLVKRFLKNEVMHSVDEANSPVAAMTHHVFDVDGVEAKKALVEKL-ASGTGRRILF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L E     V L G LSQ  R   L     G ARV +ATDVAARG+ +
Sbjct: 260 MRTKHQARKLARQLTESGIPSVDLHGNLSQAARDRNLAAFSAGEARVLVATDVAARGVHV 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            D+ELV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R+A + V 
Sbjct: 320 DDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAILMRKAAIKVT 377


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 180/332 (54%), Gaps = 3/332 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T +Q   + P L  KD++  AQTG+GKT +F L +   L     R   A
Sbjct: 14  KAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDILAHGRAR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E       + +A+ IGGV +  + + L+ G  +++ TP
Sbjct: 71  LMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKALEKGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   + ++    +V+DEAD MLD+GF  DIE I    P +R+ L+FSAT+ P 
Sbjct: 131 GRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQTLLFSATMPPV 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +  +   + +A      ++I  R V V    +  A+  +L      +A++FC+
Sbjct: 191 IKKLADRFLSNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLEAEDVLSAVIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +V    K L  H F+   + G++ Q  R   L+  R G   + +A+DVAARG+D+  
Sbjct: 251 RKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILVASDVAARGLDIKG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +  V + +   +P++ +HR GRTGRAG KG++
Sbjct: 311 VSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVA 342


>gi|227496959|ref|ZP_03927211.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833567|gb|EEH65950.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 468

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 192/360 (53%), Gaps = 8/360 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + L  RG+ +   +Q A L   LR +DVL   +TGSGKT+AF L L   L A++D
Sbjct: 42  PELVAD-LDSRGFTSPFPIQTATLPDTLRGRDVLGRGRTGSGKTLAFSLPLVQRL-ADDD 99

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   PL L +APTRELA+Q+   +  L     + V    GGVS   + + L  G  I
Sbjct: 100 APRPGY-PLGLVLAPTRELALQIADTIRPLATALDLTVTTVFGGVSQKPQEKALAAGVDI 158

Query: 128 VVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           VV  PGRL D + G+G+  +  +   VLDEAD M DLGF  ++  I+ ++P + + ++FS
Sbjct: 159 VVACPGRLLD-LMGQGIVRLDDVAITVLDEADHMADLGFLPNVRRIMRATPPRGQRMLFS 217

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+   +  L   +  D +  ++   +    D+D+R   VA  + +D  ++++    G  
Sbjct: 218 ATLDNGVDKLVDEFLHDPLHHSVDPASSPVRDMDHRVWTVADKTAKDGLVLHL--ASGTG 275

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L       V L G +SQ  R  A+     G+A V +ATD+AA
Sbjct: 276 QRILFTRTKHLARRLARKLVAAGIPAVELQGNMSQNARERAMGAFSAGQAHVMVATDIAA 335

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +ELV+H +  +  +  LHRSGRT RAG  G  V ++    +   + L ++A +
Sbjct: 336 RGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGASGTVVTLVLPEQKHDVQVLLKKAKI 395


>gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group]
          Length = 414

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 185/333 (55%), Gaps = 5/333 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+ +DV+   QTGSGKT AF L +   LL    R       LA 
Sbjct: 2   GWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR----PRFLAC 57

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ ++ E L +   +  +V IGG+    +   L    H+VVGTPGRL DH
Sbjct: 58  VLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLDH 117

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +   KG + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSAT++  +  L 
Sbjct: 118 LTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKLR 177

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +   K+ V+V +AS+      +     +V    +D  ++++L        +VF  T  S 
Sbjct: 178 RACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCEST 237

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG+D+  +++VI
Sbjct: 238 RLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVVI 297

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +   N ++ +HR GRT RAG+ G +V ++ Q
Sbjct: 298 NYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQ 330


>gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 456

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 14/352 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+++G     ++QE  L   L  KD++  A+TG GKT+ FG+ +   L  + D   
Sbjct: 17  IVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDRLFDDADITE 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEW----LYAKTG--------VVVAVCIGGVSVHRER 118
                  L + PTREL +QV  +L      L A  G          V    GGV   ++ 
Sbjct: 77  LDGTVRGLVVVPTRELCLQVAEDLTGASTRLTAPVGPGKDATRPFRVTAIYGGVPFEKQT 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +VVGTPGRL D  R   L+++H++ +VLDEADEMLD GF DD++ I+  +  
Sbjct: 137 AALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLDDVKAIMAQTSP 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIV 236
            R+ ++FSAT+   I  L +++    VRV   + + Q +      ++      DR + + 
Sbjct: 197 NRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQSHRLDRVSVLA 256

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G    IVF  T+ S +   + LA   F+V A+ G++ Q +R  +L   RDG   
Sbjct: 257 RILQTPGRGRTIVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRERSLDAFRDGSVD 316

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG  G++V ++
Sbjct: 317 IMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLV 368


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 184/337 (54%), Gaps = 6/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L +   R  P  
Sbjct: 15  AIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILERL-SNGGRTRPNH 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              AL + PTRELA Q+  E   +Y++   +  +V  GGV ++ +   L+ G  I+V TP
Sbjct: 74  V-RALILTPTRELAAQI-HENAVVYSRHLPLRSSVVFGGVKINPQMMALRKGTDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ ILD  PK R+ L+FSAT S  
Sbjct: 132 GRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQSLLFSATFSDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAIVFC 251
           I  LAK    + V +++   N     ++ + +  A   +  A+++ L   G  K  +VF 
Sbjct: 192 IRNLAKGLVNNPVEISVTPANSTARTVE-QCIYPADKKKKPAMLSKLIKDGDWKQVLVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++  + L E       + G  SQ  R+ AL   + G  RV +ATD+AARGID+P
Sbjct: 251 RTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVLVATDIAARGIDIP 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ E+    E+ +HR GRTGRAG  G ++ ++
Sbjct: 311 QLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLV 347


>gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
          Length = 438

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 194/357 (54%), Gaps = 20/357 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + EAL+E G     ++QE  +   LR  D++  A TG+GKT+ FG+ L   +     
Sbjct: 60  PETV-EALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLLERV----- 113

Query: 68  RFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            F+PA      P AL + PTREL +QV ++L       GV V    GGV+   +   L+ 
Sbjct: 114 -FAPAEGGDGVPQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQIDALRK 172

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ +
Sbjct: 173 GVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTM 232

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +FSAT+   I TL++ + +  + ++         + Q   + YR   +   ++   +  I
Sbjct: 233 LFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSM---NKIEIVARI 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+  + 
Sbjct: 290 LQAEGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDIL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           +ATDVAARG+D+  +  VI+ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 350 VATDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPR 406


>gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 427

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 183/338 (54%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTEDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L++GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRSGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L      + +   + SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNNPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHLWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 203/384 (52%), Gaps = 16/384 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +  +G+ N T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 103 FPDYVLKEVKAQGFPNPTAIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPAIVHINAQ- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P   P+ L +APTRELAVQ+ +E    + ++  +   C+ GGV   ++ RDL  GA
Sbjct: 162 PLLQPGDGPICLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPKGQQIRDLARGA 220

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 221 EICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 280

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI---LR 240
           SAT   ++ TLA++Y  D ++VNI S +    H+      V      RD    ++   ++
Sbjct: 281 SATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAKHLETAMQ 340

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              AK  IVF ST+ +    T  +    +  +A+ G+  Q+ER   L   R GR+ + +A
Sbjct: 341 DPQAK-VIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGRSPIMVA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG KG ++ +       +A  L 
Sbjct: 400 TDVAARGIDVKGVTTVINHDMPGNVEDYVHRIGRTGRAGEKGTAITMFTDGNSGQAHDLI 459

Query: 360 --FREANVSVVWEPAPSVEAIRER 381
              REA   +     P ++A+ ++
Sbjct: 460 TILREAKQEI----PPQLQALDKK 479


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/316 (37%), Positives = 177/316 (56%), Gaps = 10/316 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDR---FSPASAPLALAIAPTRELAVQVGREL 94
           +D+L  A TGSGKT+AF + +   +     R         PLAL +APTRELA Q+ +E 
Sbjct: 195 RDLLGIASTGSGKTLAFLIPILMKIDQLPSRPLVLKKMDGPLALILAPTRELAQQIEKEA 254

Query: 95  EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
           E L    G    VA  +GG S+      +  G  I+V TPGRL D +    L +  ++ +
Sbjct: 255 EELIDAWGKNCEVASIVGGHSIEEISLQVSQGTDILVATPGRLIDCLENHVLTLGKVETL 314

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           VLDEAD M+D+GF + +  IL +  +KR+ +MF+A+++P    +A  Y K+ VRV ++  
Sbjct: 315 VLDEADRMIDMGFEEQVTSILGNLTQKRQTMMFTASMTPGTEKIAAGYLKNPVRVTVSGS 374

Query: 213 NRQHSDIDYRAVLVAL---SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
             Q S    R ++  +     R   IV  L  + A   I     RA+     K   E  +
Sbjct: 375 --QGSTPMIRQLVEHIGSEEQRFQRIVEFLPQYRAPIIIFINYKRAADWLVQKFYKETQY 432

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +V  L G  SQ++R  +LQ++R G+ ++ IAT+VAARG+D+PD+ LVI+ +LS   E+ +
Sbjct: 433 KVTVLYGSKSQEQREQSLQLLRKGKVQIMIATNVAARGLDVPDVSLVINFQLSKTFEDYV 492

Query: 330 HRSGRTGRAGRKGMSV 345
           HR GRTGRAG +G ++
Sbjct: 493 HRIGRTGRAGHEGTAI 508


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 194/343 (56%), Gaps = 11/343 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + + + G++  T +Q       LR +D++  A+TGSGKT   G  + + +L    
Sbjct: 497 PEILND-IRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKT--LGYLIPAFILLRQC 553

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R +P + P  L +APTRELA Q+  E+   + ++  V   C+ GG     + ++L  GA 
Sbjct: 554 RNNPQNGPTVLVLAPTRELATQIQDEV-IKFGRSSRVSCTCLYGGAPKGPQLKELTRGAD 612

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R+ LM++
Sbjct: 613 IVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 672

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   + V+VNI S  E   +  I     +V   ++++ +  ILR    
Sbjct: 673 ATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQILRAQER 732

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    +  + +  H F   A+ G+ SQ ER   L   R G++ + +ATD
Sbjct: 733 GSK-VIIFCSTKRLCDQLARSIG-HQFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATD 790

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++V
Sbjct: 791 VAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVNV 833


>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
 gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
          Length = 447

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAVP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1]
 gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 489

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L       +R+ 
Sbjct: 114 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 172

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 173 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 231

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 232 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 291

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  +  
Sbjct: 292 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 351

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA RG
Sbjct: 352 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 411

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 412 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSI 449


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/374 (35%), Positives = 196/374 (52%), Gaps = 16/374 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSP 71
           AL++ G  +  ++QE  L   +   D++  A+TG GKT  FG+ L   L    E+   + 
Sbjct: 39  ALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLHRLAHAEESGLRAL 98

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVV----VAVCIGGVSVHRERRD 120
            + P AL I PTREL +QV  +LE    K        G V    +    GG     +  D
Sbjct: 99  DNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITSIYGGRPYESQIAD 158

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE I+ + P  R
Sbjct: 159 LRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLPDIERIMSALPTPR 218

Query: 181 RMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I TLA+ +  +   +R   A ++  H             D+   +  I
Sbjct: 219 QTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVYRAHALDKAELVARI 278

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  RDG   V 
Sbjct: 279 LQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREKALKRFRDGTIDVL 338

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +N +HR GRTGRAGR G++V ++  +   R E 
Sbjct: 339 VATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTGIAVTLVDWDELHRWE- 397

Query: 359 LFREANVSVVWEPA 372
           L   A    + EPA
Sbjct: 398 LINNALGLGIPEPA 411


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 185/342 (54%), Gaps = 13/342 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPA 72
            + + G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L AL +    E D     
Sbjct: 36  GIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVKPTERD----- 90

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L ++PTRELA Q  +    L     V V  C+GG  +  + R L+ G HIV GTP
Sbjct: 91  --PQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVHIVSGTP 148

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+   I  + L+  HLK +VLDEADEMLD GF++ +  I    P   + ++ SAT+   
Sbjct: 149 GRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVSATMPNE 208

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIV 249
           I  +  N+  +  RV +  +      I  +   VA+       + + ++        A++
Sbjct: 209 ILEMTNNFMNNPFRVLVKRDELTLEGI--KQFFVAVEKEQWKFDTLCDLYDTLTITQAVI 266

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T  + E  F VV++ G++ Q+ER   +Q  R G+ARV I TD+  RG+D
Sbjct: 267 FCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWGRGLD 326

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  + LVI  +L +N E  +HR GR+GR GRKG+++  + ++
Sbjct: 327 VQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKED 368


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 20  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 73

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQV + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 74  ILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 133

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   +  +  
Sbjct: 134 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTN 193

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 194 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 253

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 254 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 313

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG++V
Sbjct: 314 NYDLPNNRELYIHRIGRSGRYGRKGVAV 341


>gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 554

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 193/394 (48%), Gaps = 16/394 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+  G      +Q A L   L  KDVL   +TGSGKT AF L L + L   
Sbjct: 71  GLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRGRTGSGKTYAFVLPLIARLATS 130

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P + P AL +APTRELA Q+   +  L    G+      GGV    +   L+ G 
Sbjct: 131 GTRRRP-NQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQITGLRKGV 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DH++     +  ++  VLDEAD M DLGF   +  +L+++P   + L+F
Sbjct: 190 DIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPATGQRLLF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K + +  V  ++ S     + + +  + V    R   +V++    G  
Sbjct: 250 SATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVDLAAAPG-- 307

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      TK L       V L G LSQ  R+  L+   DG A+  +ATD+AA
Sbjct: 308 RTLVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVATDIAA 367

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVIHA+     +  LHRSGRT RAG +G  V ++  +  R    L R+A +
Sbjct: 368 RGIHVDDVSLVIHADPPIEHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVRDLTRKAGI 427

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
                 AP+V  +R       + DPL  +   G+
Sbjct: 428 ------APTVTKLR-------IGDPLLTELAPGE 448


>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 442

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 185/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS   +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L ++  FS A  
Sbjct: 16  LSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKAL-KSKAFS-ARD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL+ +         + +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L  ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI+  IL     K  I+F 
Sbjct: 194 VNDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEQAEYKQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R TK L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+ 
Sbjct: 254 ATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFKILVTTDVASRGIDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG +V ++
Sbjct: 314 SVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 190/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V+  VCIGG ++  + R L  G 
Sbjct: 89  ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
          Length = 454

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 189/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T+L E          
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 155 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D     +   AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGHDVIQQAQSGTGKTATF----CSGVLQQLD--YNVTQCQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L+  ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L + PEN LHR GR+GR GRKG+++  + +  +   + + +  NV V   P+   E 
Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVNKEDEAMLQDIQKFYNVLVEELPSNVAEL 412

Query: 378 I 378
           +
Sbjct: 413 L 413


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 184/337 (54%), Gaps = 7/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388


>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 176/341 (51%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++   ++  GY   + +Q   + P    +DV   A+TG+GKT AF L +   LL    
Sbjct: 23  PRIVAN-VARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHRLLTGAG 81

Query: 68  RFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +P+  P    AL ++PTRELA Q    +       G+ VA+ IGG    R+ R L +G
Sbjct: 82  DAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQARALLDG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+    + + H   +VLDEAD MLDLGF +D+  I    P + + L+
Sbjct: 142 VDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPVRHQTLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SPAI+ L +      +++    +      I  + +    + +  +++ +LR    
Sbjct: 202 FSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLAVLRREAG 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+ +     + L        AL G+  Q  R   L   R GR  V +ATDV 
Sbjct: 262 GRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDVM 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LV++ ++   PE  +HR GRT RAGR+G ++
Sbjct: 322 ARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTAL 362


>gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 457

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/374 (34%), Positives = 197/374 (52%), Gaps = 13/374 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L    
Sbjct: 90  MPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 146

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA 
Sbjct: 147 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGAE 206

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD  +P  +RML F
Sbjct: 207 VVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 265

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+      I    G  
Sbjct: 266 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 323

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V +AT+VAA
Sbjct: 324 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVAA 383

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 384 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 443

Query: 366 SVVWEPAPSVEAIR 379
           +      P V  +R
Sbjct: 444 T------PQVTQVR 451


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 8/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + GY + T +Q       L  +D++  A+TGSGKT+ F +  A  ++A+  
Sbjct: 82  PDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKTGSGKTMGFMVPAALHIMAQPP 141

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
                  P+AL +APTRELAVQ+  E   +  +   +   C+ GG     + R L+ G H
Sbjct: 142 -IRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQIRALRAGVH 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     K R+ LMFS
Sbjct: 201 VCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQQIRKDRQTLMFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++Q+D +RV++ SE+   ++D+     +V   D+   +  IL+  G +
Sbjct: 261 ATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQRRLEEILQKVGKQ 320

Query: 246 NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++F  T+ +       L   +   V+A+ G+  Q +R   L   R     V +ATDVA
Sbjct: 321 RVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRDERSVLVATDVA 380

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQNMQRRAERLF 360
           ARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P    R    + 
Sbjct: 381 ARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYTFVSGADPSKTVRDLIDIL 440

Query: 361 REANVSV 367
           R AN  +
Sbjct: 441 RRANQEI 447


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 182/323 (56%), Gaps = 7/323 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL +APT
Sbjct: 60  SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQALILAPT 113

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D IR + 
Sbjct: 114 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS 173

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +   +  D
Sbjct: 174 LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTD 233

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
            +R+ +  +      I    V V   + + + + ++        A++FC+T+  V   T+
Sbjct: 234 PIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTE 293

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I+ +L 
Sbjct: 294 KMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 353

Query: 323 SNPENLLHRSGRTGRAGRKGMSV 345
           +N E  +HR GR+GR GRKG+++
Sbjct: 354 NNRELYIHRIGRSGRYGRKGVAI 376


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 190/353 (53%), Gaps = 17/353 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + + E I + +GEA  ER +    ++QE  L   L  +DV+  A+TG+GKT+ FG+ L  
Sbjct: 57  LGVREEIVRALGEAGIERAF----AIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQ 112

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++   D       P AL + PTREL +QV  +L        V V    GG     +   
Sbjct: 113 RVITPGD-----GTPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAA 167

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL D    + L +  ++++VLDEADEMLDLGF  DIE +L   P +R
Sbjct: 168 LRKGVDVVVGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDER 227

Query: 181 RMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
           + ++FSAT+   I TLA+ +  Q   VR         H   +   YRA  +   D+   +
Sbjct: 228 QTMLFSATMPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHAL---DKVELL 284

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L+      +++F  T+ +  +    +AE  F V A+ G+L Q  R  AL+  R G+ 
Sbjct: 285 ARVLQARDRGLSMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKI 344

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVAARGID+  +  V++ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 345 DVLVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLV 397


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 178/338 (52%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT AF L +   LL    +  
Sbjct: 19  ISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILHRLLQNRIKPQ 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S  + L ++PTREL+ Q+            +  A+ IGGV + R+ R + +G  ++V 
Sbjct: 79  PKSCRV-LVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQVRAVMHGVEVMVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P KR+ L FSAT+ 
Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQTLFFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    +D  RV +   +     I  R + V  + +   +  +L+      A++F
Sbjct: 198 KDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFLAQLLKQEPVNRALIF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  +ATD+AARGID+
Sbjct: 258 TRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTLVATDIAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  V++ +L + PE  +HR GRT RAG  G ++ ++
Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLV 355


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  +L  +            L
Sbjct: 48  GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 102 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 162 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 222 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER N ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 282 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+S+
Sbjct: 342 NYDLPNNRELYIHRIGRSGRFGRKGVSI 369


>gi|218188673|gb|EEC71100.1| hypothetical protein OsI_02884 [Oryza sativa Indica Group]
          Length = 593

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 196/355 (55%), Gaps = 24/355 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L A      D+
Sbjct: 138 KAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQ 197

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
             P+     L + PTRELA+QV  E + L  Y ++ + V V IGG  + +E+R +Q N  
Sbjct: 198 LRPSIN--LLVMCPTRELAIQVAVEAKKLLKYHRS-LGVQVVIGGTRLTQEQRSMQANPC 254

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DH+    G    +  +K +VLDEAD +LD+GFR DIE I+ S PK+R+ 
Sbjct: 255 QILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQT 314

Query: 183 LMFSATISPAI-----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           L+FSAT+   +       + KNY+   +      +   H+ +    ++  L    + + +
Sbjct: 315 LLFSATVPEEVRQISHIAMKKNYK--FINTVKDGDEETHAQVSQMFMIAPLDLHFSILYD 372

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +L+ H A++A    I+FC+T        ++L++    +  +    SQ  R+      R  
Sbjct: 373 VLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKS 432

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  + +++DV+ARG+D PD+ LVI   + ++ +  +HR GRTGR G++G  + ++
Sbjct: 433 RGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLL 487


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L ++     
Sbjct: 12  ILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL-SKGKPAG 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A  AL + PTRELA QV   +E    +  +   V  GGV ++ +   L+ G  I+V 
Sbjct: 71  PNQA-RALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRKGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL + PK R+ L+FSAT S
Sbjct: 130 TPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N   + +      V    +   +  +++ +     ++F
Sbjct: 190 NEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQVLIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R TK L     +  A+ G  SQ  R+ AL   +DG  +  +ATD+AARGID+
Sbjct: 250 SRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATDIAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L +  E+ +HR GRTGRAG  G +V ++
Sbjct: 310 DQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLV 347


>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 599

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 181/343 (52%), Gaps = 1/343 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L  +
Sbjct: 7   NLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRL-TQ 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                PA    AL + PTRELA QV   L        V   V  GGV ++ +   ++ G 
Sbjct: 66  GGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIKRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   P+ ++ L+F
Sbjct: 126 DILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQSLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA    K+   + +   N     I      V    +   +++I++ H   
Sbjct: 186 SATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQQHNWS 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +ATD+AA
Sbjct: 246 QVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++
Sbjct: 306 RGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLV 348


>gi|283783572|ref|YP_003374326.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
 gi|283441454|gb|ADB13920.1| DEAD/DEAH box helicase [Gardnerella vaginalis 409-05]
          Length = 607

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E L   G      +Q+A L   L+  ++L   +TGSGKT+AF + L + L AEN
Sbjct: 158 VPEPLVEVLRADGKTTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARL-AEN 216

Query: 67  ---------DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                    +R S  S    AP A+ +APTREL  Q+   +  L A  G+      GGV 
Sbjct: 217 FVDLIHSDKNRKSRESSEIPAPRAIILAPTRELVHQIDDVIAPLAAAYGMRTVTVYGGVR 276

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             R+   L+ GA IV+  PGRL D +R   L +  +   VLDEADEM D+GF   +  +L
Sbjct: 277 YQRQVSQLKQGAQIVLACPGRLEDLLRQGALTLEKVMVSVLDEADEMADMGFLPAVTRLL 336

Query: 174 DS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +  +P  +RML+ SAT+   ++TL + +  +AV   +   + Q   + +    V+  D+ 
Sbjct: 337 EQVAPDGQRMLL-SATLDKQVSTLVERFLPNAVVHAVDDADCQVDTMTHHIFAVSAGDK- 394

Query: 233 NAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +LR    G K +I F  T+       K   +     V L G LSQ +R   L + 
Sbjct: 395 ---YEVLRKLASGKKRSIFFTRTKYQAKNMAKKFVQQGIPAVDLQGNLSQNQRDRHLAVF 451

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +G  RV +ATDVAARGID+ D+ LV+  E   +P++ LHRSGRT RAG +G  V ++  
Sbjct: 452 AEGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGEEGDVVTLVLP 511

Query: 351 NMQRRAERLFREANVSVVWE---PAPSV 375
           N +R A  + R+A +    E   P+ SV
Sbjct: 512 NQKRAAHMMLRKAGIHAKAEDVSPSSSV 539


>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
 gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
 gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
 gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
          Length = 454

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   +  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
 gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
          Length = 446

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 120/327 (36%), Positives = 173/327 (52%), Gaps = 1/327 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A + P L  +D++  AQTG+GKT AF L +   L A  ++  P  AP AL
Sbjct: 23  GYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLHRLAAAGEKRIP-KAPRAL 81

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+   +E      G+  A+  GGVS   +   LQ G  +++ TPGRL D 
Sbjct: 82  ILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVALQRGVEVMIATPGRLLDL 141

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + + +  ++  VLDEAD MLDLGF  D++ I    P  R+  +FSAT+  +I  L +
Sbjct: 142 INQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQTALFSATMPQSIIELTE 201

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +  ++  RV I   +     I    + VA +++   +  +L       AIVF  T+  V 
Sbjct: 202 SLLRNPERVQITPTSTPIERIQQSVMFVARANKRTLLARLLGAPDVSRAIVFVRTKHGVD 261

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R    L         L G  SQ  R  AL   + GR  + +ATD+AARGID+ ++  VI+
Sbjct: 262 RVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPILVATDIAARGIDVHEISHVIN 321

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L   PE  +HR GRT RAG  G++V
Sbjct: 322 LDLPDVPETYIHRIGRTARAGAGGIAV 348


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+   +V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
          Length = 433

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 189/336 (56%), Gaps = 3/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   T +Q+  +   LR KDVL  AQTG+GKT  F L L   L   + +    S
Sbjct: 15  AVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFTLPLLQQLQNLH-KPGHKS 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +    A      AV  GGVS++ +++ L  G  I+V TPG
Sbjct: 74  FPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQKLIRGVDIIVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + ++++ ++ +VLDEAD MLD+GF  DI+ I+   PK+R+ L+FSAT S  I
Sbjct: 134 RLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQRQTLLFSATFSREI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCS 252
             LA  + +    + +  +N   +D+  + V      R   +++  +  +  +  ++F  
Sbjct: 194 KGLAAEFLRSPEEIQVTPQN-TATDLVTQVVYPVDKKRKRELLSQQIGENNWQQVLIFTR 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S +R  + L +      A+ G  SQ  R+ AL   ++G  R  +ATD+AARGID+  
Sbjct: 253 TKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRALVATDIAARGIDIQK 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL +  E+ +HR GRT RAG++G ++ ++
Sbjct: 313 LPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLV 348


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 180/342 (52%), Gaps = 10/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAEN 66
           +  A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L     A +
Sbjct: 12  LARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPMLQNLSRGTRARS 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R        AL + PTRELA QV   ++       +   V  GGVS++ + + L+ GA 
Sbjct: 72  NRVR------ALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQALRRGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+      V V+++  N     +  R   V    +   I  ++R H    
Sbjct: 186 ATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPVDKGRKPALISKLIREHNWHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L     Q  A+ G  SQ  R+ AL   +DG  +  +ATD+AAR
Sbjct: 246 VLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++
Sbjct: 306 GLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLV 347


>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 548

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 11/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   +LA  +     
Sbjct: 38  DALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLEQVLAPAEGGD-- 95

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL +QV ++L+   +  GV V    GGV+   +   L++G  I+VGTP
Sbjct: 96  GTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEALRSGVEILVGTP 155

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT+   
Sbjct: 156 GRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDRQTMLFSATMPDP 215

Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           I  L++ + +  V ++         + Q   + YR   +   ++   +  IL+  G    
Sbjct: 216 IVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSL---NKIEIVARILQARGRGLT 272

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +  R    L    F V A+ G+L Q  R  AL+  R G+    +ATDVAARG
Sbjct: 273 MIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVATDVAARG 332

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+  +  V++ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 333 IDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 380


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G GKT  F +++   L  +           AL
Sbjct: 49  GFEKPSAIQQRAIKPIVKGRDVIAQAQSGVGKTATFSISILQCLDIQMREVQ------AL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 103 VLSPTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDYGQHVVSGTPGRVFDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 163 IRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTT 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G +RV I TDV ARGID+P + L+I
Sbjct: 283 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGIDVPQVSLII 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370


>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
 gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
          Length = 524

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 194/392 (49%), Gaps = 50/392 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L++ G    T +QE  +   L  KD + +A+TGSGKT AF L +   L  E     
Sbjct: 18  LAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILERLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV 
Sbjct: 73  PVSH-FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQNLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240
                   K++ K++    IA    E  Q SD+      D R +L A  DRD  +V  LR
Sbjct: 192 --------KDFMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLCADYDRDMVLVESLR 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  +N     ++F +T+      +  LA    + V L G + Q+ER  AL   +    R
Sbjct: 244 KYREENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352
             IATDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+  S+F  P+++  
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363

Query: 353 ------------------QRRAERLFREANVS 366
                             QR  ER+F + NVS
Sbjct: 364 LGAIEAEINTKLTEHPIDQRMVERIFMQVNVS 395


>gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 424

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/341 (35%), Positives = 180/341 (52%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G     ++QE  L   L   D +  A+TG GKT  FG+ L   +    D   
Sbjct: 19  ITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVAE 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELAVQVG +L+       + +    GG     +   L+ G  +VVG
Sbjct: 79  TDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVVG 138

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D H RG  L++  +  +VLDEADEMLDLGF  DIE IL +   + + ++FSAT+
Sbjct: 139 TPGRLLDLHKRG-ALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA 247
             AI TLA+++    V +   + +   +    R V+      D++     IL+       
Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKILQSKDRGKT 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + +ATDVAARG
Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++
Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLV 358


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 202/378 (53%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    PA A   + +APTRELA Q+ +++E + Y      VA+  G  G+   +
Sbjct: 61  NQL---SKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA++   D   V +A  ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAQSILHDPAEVKLAV-SKPADKIIQAAYICYEAQKLGIIE 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ R    +  I+F S++  V   TK L      V  +  +L Q +R   +   R+GR  
Sbjct: 237 SLFRQQEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +N Q R 
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +   P P+
Sbjct: 357 KQIEDFLGKEIYKLPVPA 374


>gi|152965210|ref|YP_001360994.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359727|gb|ABS02730.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 530

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 187/363 (51%), Gaps = 3/363 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + + L+  G V+   +Q A L   +  +DVL   +TGSGKT+AF L L  T +A +
Sbjct: 82  VPQPLVDVLAATGVVSPFPIQTATLPDSMAGRDVLGRGRTGSGKTIAFALPLV-TRVAAS 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV   +  L    G+   V  GGV  + +   L+ G  
Sbjct: 141 SRPRRAGRPRSLVLVPTRELANQVAATITPLAKALGLRTTVVFGGVGQNPQVSALREGVD 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++  PGRL D IR    ++  ++  VLDEAD M DLGF   ++ +LD++P   + L+FS
Sbjct: 201 VLIACPGRLEDLIRQGHCHLDAVEVTVLDEADHMADLGFLPGVKRLLDATPAGGQRLLFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  + V  ++       S +++  VL   +D  N +V  L   G   
Sbjct: 261 ATLDNGIDVLVKRYLSEPVVHSVDPAVAPVSTMEHH-VLEVGADGKNTLVREL-ASGQGR 318

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ S  +  K L       V L G LSQ  R   L    DG  +V  ATD+AAR
Sbjct: 319 TVLFTRTKHSAKKLAKQLTAAGIPAVDLHGNLSQNARERNLAAFSDGSVKVLCATDIAAR 378

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +  +  +  LHRSGRT RAG  G+ V V   + +     L R+A +S
Sbjct: 379 GIHVDDVSLVVHVDPPTEHKAYLHRSGRTARAGAGGLVVTVATPDQRGDVRTLARQAGIS 438

Query: 367 VVW 369
             W
Sbjct: 439 PQW 441


>gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 507

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 13/375 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 139 EMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 195

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 196 AGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQASALRGGA 255

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD  +P  +RML 
Sbjct: 256 EVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNPDGQRML- 314

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y KD V  ++       + +++  + V  +D+      I    G 
Sbjct: 315 FSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG- 373

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V +AT+VA
Sbjct: 374 -RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVLVATNVA 432

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  +A 
Sbjct: 433 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAG 492

Query: 365 VSVVWEPAPSVEAIR 379
           ++      P V  +R
Sbjct: 493 IT------PQVTQVR 501


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVLIEELPA 408


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+   +V+ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 188/355 (52%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   +++  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  +    +R    + +  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVIIEELPA 407


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 174/335 (51%), Gaps = 3/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I +AL +  Y   T +Q   +   L   D+L  AQTG+GKT AF + +   +  + + R 
Sbjct: 12  IRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQKIEEQISSRC 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL + PTRELA+Q+G         T V   V  GGV    +   L+ G  +++
Sbjct: 72  KPGIK--ALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDALERGVDVLI 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + +  L+  VLDEAD MLD+GF  DI+ IL   PKKR+ L FSAT+
Sbjct: 130 ATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQSLFFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA     +  +V +   +     ID     V   ++ N + N+L     ++ +V
Sbjct: 190 PPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLESVLV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  +VL +      A+ G+  Q  R  AL   +D   RV IATD+A+RGID
Sbjct: 250 FTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIATDIASRGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +  L  VI+ +L + PE  +HR GRTGRAGR G++
Sbjct: 310 VDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIA 344


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 9/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P  I   +++ G+   +++Q       L  +D++  A+TGSGKT+ F  AL S L +   
Sbjct: 143 PDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGF--ALPSILHIKAQ 200

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELAVQ+  E +   +   V      GGV   ++ R LQ GA 
Sbjct: 201 APLQYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQIRSLQRGAE 260

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I++     R+ LMFS
Sbjct: 261 IVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRPDRQTLMFS 320

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  +A ++  D V+VNI S E   + ++     +    D+   ++  L +   +
Sbjct: 321 ATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIKHLEHISQE 380

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           N   I+F  T+ +    TK L +  +  +A+ G+  Q ER   L+  + G + + +AT V
Sbjct: 381 NGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNSPIMVATAV 440

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---F 360
           A+RG+D+ D+  VI+++  +N E+ +H+ GRTGRAGRKG+++        + A  L    
Sbjct: 441 ASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGRAGRKGVAITFFTSENSKSARDLVGIL 500

Query: 361 REANVSV 367
           REAN  V
Sbjct: 501 REANQEV 507


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  +L  +            L
Sbjct: 69  GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 122

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 123 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 182

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 183 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 242

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 243 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 302

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER N ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 303 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 362

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+S+
Sbjct: 363 NYDLPNNRELYIHRIGRSGRFGRKGVSI 390


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 10/379 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +       S
Sbjct: 20  TLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   ++     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D V V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  + + + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSVEAIRERDAQR 385
             +EP+P    +RE ++ R
Sbjct: 380 KGFEPSP---VVREENSPR 395


>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
 gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
          Length = 424

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 192/357 (53%), Gaps = 8/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q+  + P L  +D+L  AQTG+GKT AF L +   L+ +  +   A    AL
Sbjct: 20  GYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPILDQLMKQPQKGKRAIK--AL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+Q+    +       +   V  GGV    +   L+ GA I++ TPGRL D 
Sbjct: 78  VLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQVDQLKKGADILIATPGRLLDL 137

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L++S ++  VLDEAD MLD+GF  D++ +      K++ L+FSAT+   I  LA 
Sbjct: 138 VGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVNKKQTLLFSATMPKEIAGLAA 197

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +  K+ VRV     +     I+ R   V  S++++ ++ +L+     +A+VF  T+    
Sbjct: 198 SLLKNPVRVEATPVSTPIEKIEQRVYYVEKSEKNDLLLRVLKKEEVTSALVFTRTKHEAD 257

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R  + L +   Q +A+ G  SQ  R  AL   ++   +V +ATD+AARGID+  L  VI+
Sbjct: 258 RVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEIQVLVATDIAARGIDIEKLSHVIN 317

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR----AERLFREANVSVVWEP 371
             + +  E  +HR GRT RAG++G+++    QN +R      E+L R   + VV +P
Sbjct: 318 YNIPNISETYVHRIGRTARAGQEGIAISFC-QNDERAYLKDIEKLIR-YTIPVVKDP 372


>gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 370

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 173/313 (55%), Gaps = 12/313 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97
           DV+  AQTG+GKT+AF       LL   +  SP    +  L + PTRELA+Q+  E   L
Sbjct: 41  DVIAEAQTGTGKTLAF-------LLPMFENMSPNINTIQGLIVTPTRELAIQITEEAMKL 93

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                + +    GG  +  +   L+   H+V+ TPGRL DH+    +++ +LK +VLDEA
Sbjct: 94  NESKDLNILSAYGGKDIGSQLNKLKGNIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEA 153

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D+ML +GF++++E I+  + K R+ L FSAT++ ++  LA  Y  D   + I  E     
Sbjct: 154 DQMLLMGFKNEVETIIKHTSKNRQTLCFSATMNSSVKKLAYKYMDDPKLITIQKEEITLK 213

Query: 218 DIDYRAVLVALSDRD--NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +I  + VL+  +DR+  + +  +L       AI+FC T+  V +    L +  +    L 
Sbjct: 214 NI--KQVLIETTDRNKLDDLCKVLNETNPFMAIIFCRTKRRVDKLEMDLYQRGYNCKKLH 271

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+L+Q +R   ++  ++ + +  IATDVAARG+D+  +  + + ++  N EN +HR GRT
Sbjct: 272 GDLTQSKREKVMKDFKNTKIQYLIATDVAARGLDITGVTHIYNYDIPENTENYIHRIGRT 331

Query: 336 GRAGRKGMSVFVI 348
           GRAG KG +   I
Sbjct: 332 GRAGEKGYAYLFI 344


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 186 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 244

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 245 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 304

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P+K  R  
Sbjct: 305 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQKGIRHT 364

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 365 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 424

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 425 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 484

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 485 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 532

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 533 ERNINIT 539


>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 480

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 197/370 (53%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L +   L + N       
Sbjct: 15  AVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVLQLLSSHNPHPKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  ++       +   V  GGVS++ +   L++G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMMKLRSGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   V++A  N     I     +V    +   +  ++     +  +VF  T
Sbjct: 195 KGLAEKLLHNPEEVSVARRNTASEQITQHVHMVDKKRKRELLSFLIGRDNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AARGID+ +L
Sbjct: 255 KHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAARGIDISEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ-NMQRRAERLF-REANVSVV- 368
             V++ EL + PE+ +HR GRTGRA   G  +S+  + +  + R  ER+  RE     + 
Sbjct: 315 PHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDELKLLRDIERVLKREIPRMAIE 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 193/346 (55%), Gaps = 11/346 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+++ + +   G+   +++Q   +   +R +D +  AQ+G+GKT  F + + S
Sbjct: 26  FESMNLKPELL-KGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++  ++          AL ++PTRELA Q+   +E L     V    CIGG  V  + + 
Sbjct: 85  SIDTKSKDCQ------ALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G HI+ GTPGR+ D I+ + +   H+K +VLDEADE+L  GF++ I  I  + P   
Sbjct: 139 LQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGA 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           ++++ SAT++P +  +   +  D V++ +  ++     I    +     D + + + ++ 
Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+A V+     + +  F V A+ G++ Q++R + ++  R G  RV I
Sbjct: 259 DNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +TDV ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG ++
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAI 364


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 181/334 (54%), Gaps = 8/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76
           Y   T VQ+  +      +D++  AQTGSGKT AF L + + ++        F+    PL
Sbjct: 333 YAKPTPVQKYGMPIISCGRDLMACAQTGSGKTAAFLLPIITNMITHGGCISTFNVIQEPL 392

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA+Q+  E       T +   V  GG SV  + R+ Q G  I+V TPGR+ 
Sbjct: 393 ALIVSPTRELAIQIYNEARKFCRGTTIRPVVVYGGTSVSHQMRECQKGCSILVATPGRMH 452

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATISPA 192
           D +    + +  LK ++LDEAD MLD+GF  DI+ +++    P K  R+ LMFSAT    
Sbjct: 453 DFVTRGYIGLGKLKFLILDEADRMLDMGFGPDIQRLIEHPHMPAKGDRQTLMFSATFPNE 512

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFC 251
           +   A  Y  D + + +       SDI+ R   V   D+ + ++ ILR     +  +VF 
Sbjct: 513 VQEKAGEYLNDYLFLTVGRVGGAASDIEQRVFSVGQFDKRDKLMEILRDQKDDDRTLVFV 572

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST+ +      +L++  F   ++ G+  QQER  AL+  + G+A + +AT VAARG+D+P
Sbjct: 573 STKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDFKTGKAPILVATSVAARGLDIP 632

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++ V++ +L S+ +  +HR GRTGR G  G S 
Sbjct: 633 GVKHVVNYDLPSDIDEYVHRIGRTGRVGNLGRST 666


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 204/395 (51%), Gaps = 39/395 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           + ++I + +S   Y   T VQ+  L   L ++D++  AQTGSGKT AF + + + +  + 
Sbjct: 226 LTEIIKQNISMARYDRPTPVQKYALPFILAKRDLMACAQTGSGKTAAFLVPILNQIYEQG 285

Query: 66  -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                  N R      PL+L +APTRELA Q+  E      +  V   V  GG  V  + 
Sbjct: 286 PVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYGGADVVSQM 345

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175
           RDL  G H++V TPGRL D I RGK + + + K +VLDEAD MLD+GF   I  I+  D+
Sbjct: 346 RDLSRGCHLLVATPGRLADMIDRGK-IGLDYCKYLVLDEADRMLDMGFEPQIRRIVEEDN 404

Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P   +R+ LMFSAT    I  LA+++  + + + +        +I  + V V+  D+ +
Sbjct: 405 MPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWVSEDDKRS 464

Query: 234 AIVNILRYHGAKNA----------------------IVFCSTRASVSRFTKVLAEHLFQV 271
            +++IL   G   A                      +VF  T+       + L  H + V
Sbjct: 465 FLLDILNAAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFLYRHGYPV 524

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+ SQ+ER +AL++ R G+  + +AT VAARG+D+P ++ VI+ +L S+ E  +HR
Sbjct: 525 TSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHR 584

Query: 332 SGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
            GRTGR G  G++        +NM R    L +EA
Sbjct: 585 IGRTGRMGNLGLATSFFNDKNRNMVRDLVELLQEA 619


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 179/338 (52%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L   N R +
Sbjct: 12  ILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--ANGRPA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++   AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA ++V 
Sbjct: 70  RSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRMRKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S
Sbjct: 130 TPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N+    +      V    + N +  +L     K  +VF
Sbjct: 190 DEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNKRNWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 TKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 EQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLV 347


>gi|225557690|gb|EEH05975.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus G186AR]
          Length = 487

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S      A+ I PTRELA+Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIYDQL-VK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +   GV +A   GG S   +RR L+  A ++V TPGRL D    + LN+  +K +VLDEA
Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211
           D MLD GF  DI+ I+ + P  +KR+ +MF+AT   ++  LA  + K+ V V I    +S
Sbjct: 225 DRMLDKGFEQDIKDIVSTMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTVTIGGDLSS 284

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266
           + R ++ I     +V   ++++ ++++L +Y   +NA    +VFC  +   +R  + +  
Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F+V  + G+++Q ER N+L   + G   V +ATDVAARG+D+P ++LV++       E
Sbjct: 345 KGFKVAGIHGDMNQTERFNSLNAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +HR GRTGRAG  G+++ +  +N
Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429


>gi|242053635|ref|XP_002455963.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
 gi|241927938|gb|EES01083.1| hypothetical protein SORBIDRAFT_03g028100 [Sorghum bicolor]
          Length = 500

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 195/355 (54%), Gaps = 19/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L A      P 
Sbjct: 112 KAIKDAGYERMTQVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEVLSA-----LPR 166

Query: 73  SAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
           S  +  L + PTRELA QV  E  + L     + V V IGG  + +E+R +Q N   I+V
Sbjct: 167 STSINLLVMCPTRELANQVAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILV 226

Query: 130 GTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            TPGRL DH+    G    I  +K +VLDEAD +LD+GFR DIE I+   PK+R+ L+FS
Sbjct: 227 ATPGRLKDHLENTPGFSTRIKGVKVLVLDEADRLLDMGFRRDIEKIISFIPKERQTLLFS 286

Query: 187 ATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+S  +  ++    ++D   +N   E  +  H+ ++   ++  L      + ++L+ H 
Sbjct: 287 ATVSEEVRQISHLAMKRDYNFINTVQEGDEETHAQVNQTYMIAPLDLHFPILYDVLKKHV 346

Query: 244 AKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           A++A    IVFC+T        +VL++    +  +    SQ  R+      R  +  + +
Sbjct: 347 AEDAEYKVIVFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGLILV 406

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
           ++DV+ARG+D PD+ LV+   L ++ E  +HR GRTGR G++G  + ++ P  M 
Sbjct: 407 SSDVSARGVDYPDVTLVMQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEMH 461


>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
          Length = 501

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 89  VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427


>gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 1097

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 124/346 (35%), Positives = 185/346 (53%), Gaps = 10/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----R 68
           EAL   G ++   +QE  L   L   DV+  A+TG+GKT+ FGL L   ++   D    R
Sbjct: 49  EALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVVVSADVEAGR 108

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 109 AKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALKKGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    K L +S +K++VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 169 DVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALS-DRDNAIVNILRYH 242
           SAT+   + +LA+ Y      +   + + + + +    + V  A S D+   +  +L+  
Sbjct: 229 SATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVVARVLQAD 288

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++FC T+ + +     LA   F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 289 GRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 348

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+  +  VI+ +   + +  LHR GRTGRAG  G+++ ++
Sbjct: 349 VAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITLV 394


>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 426

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 187/341 (54%), Gaps = 1/341 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    +  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +N++        A+ +APTRELA Q+   ++     T V      GG  +  +++ L+ G
Sbjct: 65  DNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +H+    +++++L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  + TLA    +   RV++A EN     I +    V    +   +  ++     
Sbjct: 185 FSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   + G+ARV IATDVA
Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345


>gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
 gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
          Length = 435

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+ E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q G  +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+     +P++
Sbjct: 132 QGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
 gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
           Full=DEAD box protein 47
 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
          Length = 546

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 198/369 (53%), Gaps = 20/369 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ+I +A ++ G+     +Q   +   L+ +D++  AQTGSGKT AF + +  
Sbjct: 121 FESLGVHPQII-DACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQ 179

Query: 61  TLLAENDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            LL          AP     LA+APTRELA Q+  +   + +  GV   V +GG+    +
Sbjct: 180 KLL---------EAPQGLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQ 230

Query: 118 RRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L    H+VVG+PGR+  H+   KG N+  +K  ++DEAD +    F +++  IL   
Sbjct: 231 SLALAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVI 290

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R   +FSAT++  +  L +    + V+V +AS+ +    +  + + V    +D  + 
Sbjct: 291 PKERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLA 350

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL        I+F ST AS ++   +L    F  + ++G++ Q +R  +L   + G   
Sbjct: 351 YILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKS 410

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQ 353
           + +ATDVAARG+D+P ++LVI+ ++ +N +  +HR GRT RAG  G ++ ++ Q    M 
Sbjct: 411 ILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMY 470

Query: 354 RRAERLFRE 362
           +R E + ++
Sbjct: 471 QRIEFVLKK 479


>gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
           [Saccharomyces cerevisiae RM11-1a]
 gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
 gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
          Length = 501

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 89  VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427


>gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
          Length = 454

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + ++  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KNLAEKLLHNPLEIEVSRRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  +L  +            L
Sbjct: 49  GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 103 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 163 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER N ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 283 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+S+
Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVSI 370


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 200/377 (53%), Gaps = 12/377 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +  +GY   T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 124 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 182

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R S    P+AL +APTRELA Q+ +E+   + ++  V   CI GG     +
Sbjct: 183 AIVHIIHQPRLSNGDGPIALILAPTRELAQQI-QEVANCFGESAAVRNTCIFGGAPKGPQ 241

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL  G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 242 AHDLDRGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 301

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D   +NI S     + +I     +    ++D+ + 
Sbjct: 302 PDRQVLMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEKDSKLF 361

Query: 237 NILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +L+  G +     I+F  T+  V   T+ +    +Q +++ G+ +QQER + LQ  R G
Sbjct: 362 RLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSG 421

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           RA + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM
Sbjct: 422 RAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNM 481

Query: 353 QRRAE--RLFREANVSV 367
           +   +   + REA  +V
Sbjct: 482 KHAGDLIEVLREAGQNV 498


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 184/337 (54%), Gaps = 7/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388


>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 453

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTP 374

Query: 369 -WEPAPSVEA 377
            +EP P ++A
Sbjct: 375 GYEPDPLIKA 384


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D ++      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YTLVQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  I ++ +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFITRDDERMLFDIQKFYNVVV--EELPS 406


>gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1]
 gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
 gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 480

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L       +R+ 
Sbjct: 105 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 163

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 164 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 222

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 223 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 282

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  +  
Sbjct: 283 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 342

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA RG
Sbjct: 343 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 402

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 403 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 440


>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
          Length = 501

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 89  VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427


>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 454

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   +  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
 gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
           z3032]
          Length = 500

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 7/376 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY   T +Q   +   L  KD++ SAQTG+GKT  F L L   L A+  
Sbjct: 12  PEIL-RAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTAKAP 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL + PTRELA QVG  +        +   V  GGVS++ +   L++G  +
Sbjct: 71  HAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRSGVDV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSA
Sbjct: 131 LIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I TLA+   ++   V +A  N     I      V    +   +  ++     +  
Sbjct: 191 TFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVHFVDKKRKRELLSYLIGDGNWQQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 251 LVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REA 363
           +D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ER+  RE 
Sbjct: 311 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERVLQREI 370

Query: 364 NVSVV--WEPAPSVEA 377
               +  +EP PS+ A
Sbjct: 371 PRMAIAGYEPDPSIPA 386


>gi|116672314|ref|YP_833247.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116612423|gb|ABK05147.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 635

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 6/374 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFAGLGTPKELADTLTAQGITEPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPL 60

Query: 59  ASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E   F     P+ L +APTRELA Q+   +E +    G+   V  GG+S  R+
Sbjct: 61  VARLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPMAKAMGLNTTVIYGGISQARQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P
Sbjct: 121 EKALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIV 236
            + + L+FSAT+   +  + + Y  + +  ++       + +++  ++V   + +   IV
Sbjct: 181 SQGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +    GA   ++F  T+    +  K L +     V L G LSQ  R   L     G  R
Sbjct: 241 EL--ASGAGRRVLFMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   
Sbjct: 299 VLVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDV 358

Query: 357 ERLFREANVSVVWE 370
           ++L + A V V +E
Sbjct: 359 KKLMKAAGVEVNFE 372


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 191/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQKFYNVLIEELPA 408


>gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 486

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL
Sbjct: 102 FKLAPELM-HAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLL 160

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + 
Sbjct: 161 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 218

Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 219 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 278

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  D   V I + N    +++     VA +D+   + N
Sbjct: 279 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 338

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV
Sbjct: 339 LINDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 398

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 399 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 446


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 180/338 (53%), Gaps = 5/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T VQE  +   L  +DV+ +A TG+GKT AF L +   +    DR     
Sbjct: 49  AVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIERI----DRAKKPG 104

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +P AL ++PTRELA+Q+      L   +G+ V   +GGV    +   L  G  I+V TPG
Sbjct: 105 SPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLSKLSRGVDILVATPG 164

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P  R+ L+FSAT+   +
Sbjct: 165 RLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKV 224

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                   +D   V +A +      I+   V V    + + +  +L   G+K  IVF  T
Sbjct: 225 MQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSMQKASLLRLLLAERGSKRVIVFTDT 284

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      T  L    F+  ++  + +Q +R  AL     G   V +ATDV ARGID+PD+
Sbjct: 285 KTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVATDVLARGIDVPDI 344

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             V++ EL  NP++ +HR GRTGRAG  G S+ FV P+
Sbjct: 345 AYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPE 382


>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 412

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 187/347 (53%), Gaps = 5/347 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+   GY   + VQ   +   L  KD+LV A+TG+GKT AF L +   LL  +
Sbjct: 8   LSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVLDQLLNTS 67

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  P    + AL + PTRELA QV    +     TG+  AV  GGV +  +   L+ G 
Sbjct: 68  SQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQIDQLKQGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----RR 181
            ++V TPGRL D  + K  N+  ++ ++ DEAD MLD+GFRD+I+ ++   PK+    R+
Sbjct: 128 DLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPKREQKARQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT++  I   +KN       + +        ++D        + +      +++ 
Sbjct: 188 VMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQIIYNCDPARKYEITSYLIKN 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    +VF  T+    +  + L+E   +   +  + +Q++R +AL   +  + +V +AT
Sbjct: 248 RGWAQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQKLKVLVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+ +L  VI+ E+    E+ +HR GRTGRAG +G+++ ++
Sbjct: 308 DVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLL 354


>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
 gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 435

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 191/348 (54%), Gaps = 12/348 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + N T +Q A + P L  +DV+  A+TGSGKT +F + + + LL +     P     A+ 
Sbjct: 59  WTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPILNYLLEK-----PQKQVFAVI 113

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+   +  L    G      +GGV +  +   L    H+VV TPGRL DH+
Sbjct: 114 LAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALARNPHVVVATPGRLLDHL 173

Query: 140 RG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITT 195
           +  KG ++  +K +V+DEAD ML + F  +I  IL+  P   K RR ++FSAT++  +  
Sbjct: 174 QNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEKGRRTMLFSATMTSKVEK 233

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           L +    D VRV ++++ +    +    + +    +D  +  ++  H  ++ +VF +T  
Sbjct: 234 LQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKYKDCYLTYLINEHAGQSILVFGATCN 293

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V R   +L    F  + L G++SQ +R  AL   + G   + I TDVA+RG+D+P +++
Sbjct: 294 NVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGRDILICTDVASRGLDIPSVDV 353

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           VI+ +L  + ++ +HR GRT RAGR G ++ ++ Q    + +R E L 
Sbjct: 354 VINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRLEHLL 401


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  +L E G+   T +Q   +   L  +D+L  AQTG+GKT AF + L S L   
Sbjct: 7   NISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLISMLERS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +   A+ + PTRELA+Q+ +    L   T ++    IGGV +  + + L N A
Sbjct: 67  KPHLDKPTIK-AVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLKKL-NKA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGR+ D +    L +  +  +VLDEAD ML+ GF +DI+ ++   PK+R+ + F
Sbjct: 125 DVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKRRQTMFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI+  I  LA       VR+ ++ ++    ++D+    V + D+   +  +++ +  K
Sbjct: 185 SATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLIKENQGK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+    R  K +         + G+  Q+ R   L   RDG+ ++ IATD++A
Sbjct: 245 KIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILIATDISA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+  ++ V++ +L   PEN +HR GRTGR   +G +V
Sbjct: 305 RGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAV 344


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 132/399 (33%), Positives = 209/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  VQ    +     +D++  A+TG+GKT +F + L   
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKK--LAVACFYGGTPYGNQIERM 303

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           +NG  I+VGTPGR+ DH+    L++S LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 304 RNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDS 363

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    S R  
Sbjct: 364 EDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAA 423

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   IVFC T+      ++  +       +L G++ Q++R   L+  R
Sbjct: 424 VIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQ-DAQSLHGDIPQKQREITLKGFR 482

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 483 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 542

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 543 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 581


>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
 gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           493]
 gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
 gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 420

 Score =  193 bits (490), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 196/376 (52%), Gaps = 16/376 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GYV  T VQ   +   L+ +DV+V+AQTG+GKT  F L L   L         ++
Sbjct: 24  AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSA 83

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
            P+  AL + PTRELAVQV  E    Y K   + A  + GGVS+  +   L+ G  I+V 
Sbjct: 84  KPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    LN+S ++  VLDEAD MLD+GF  DI  IL   P+ R+ L+FSAT S
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFS 202

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
             I  L          + +A  N   + I +   +V   DR      +    G+KN    
Sbjct: 203 KEIKELTDKLLHSPALIEVARRNTAAARITH---VVHPVDRQRKRELLSFMIGSKNWRQV 259

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R ++ L        A+ G  SQ  R  AL   + G+ RV +ATDVAARG
Sbjct: 260 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 319

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREAN 364
           +D+  L  VI+ EL    ++ +HR GRTGRA   G+++ ++  +   + R  E+L +   
Sbjct: 320 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 379

Query: 365 VSVV---WEPAPSVEA 377
              V   +EP+P  +A
Sbjct: 380 PQEVIPGYEPSPFTKA 395


>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
 gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
          Length = 411

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 196/376 (52%), Gaps = 16/376 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GYV  T VQ   +   L+ +DV+V+AQTG+GKT  F L L   L         ++
Sbjct: 15  AIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSA 74

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
            P+  AL + PTRELAVQV  E    Y K   + A  + GGVS+  +   L+ G  I+V 
Sbjct: 75  KPVIRALILTPTRELAVQVF-ECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    LN+S ++  VLDEAD MLD+GF  DI  IL   P+ R+ L+FSAT S
Sbjct: 134 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
             I  L          + +A  N   + I +   +V   DR      +    G+KN    
Sbjct: 194 KEIKELTDKLLHSPALIEVARRNTAAARITH---VVHPVDRQRKRELLSFMIGSKNWRQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R ++ L        A+ G  SQ  R  AL   + G+ RV +ATDVAARG
Sbjct: 251 LVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREAN 364
           +D+  L  VI+ EL    ++ +HR GRTGRA   G+++ ++  +   + R  E+L +   
Sbjct: 311 LDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRDIEKLLQSKM 370

Query: 365 VSVV---WEPAPSVEA 377
              V   +EP+P  +A
Sbjct: 371 PQEVIPGYEPSPFTKA 386


>gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 501

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 129/407 (31%), Positives = 217/407 (53%), Gaps = 32/407 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----AS 60
           NI + + + L+   +VN T VQ   + P L  +DVL +A TG+GKT++F + +     A+
Sbjct: 37  NISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMIERMDAN 96

Query: 61  TLLAENDRFSPASAPL------------------------ALAIAPTRELAVQVGRELEW 96
            L A   + +   AP                         AL + PTRELA+QV      
Sbjct: 97  PLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQVLDAYAK 156

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +         +  GG+S   +   L+ G  +VV TPGRL D+++ + +N+++++ +VLDE
Sbjct: 157 IVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVEMLVLDE 216

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
            D MLD+GF   I  I+ + PK R+ + +SAT+   IT + ++Y  + +R+ I + ++ +
Sbjct: 217 VDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIGTTSKPN 276

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ RA  V + D+  ++++ L    A + +VF  T+    R  K L +   +   + G
Sbjct: 277 ERVELRAFTV-MQDQKLSLLDQLLGEHAGSYLVFSRTKHGADRIAKKLEKLGHETDVIHG 335

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           + SQ +R+ AL+    GR+RV +ATDVAARGID+  +  V++ +L +  ++ +HR GRTG
Sbjct: 336 DRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDDFVHRIGRTG 395

Query: 337 RAGRKGM-SVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           RA   G+ + FV+PQ  +  A +L RE  +S  W  A    A  ER+
Sbjct: 396 RASASGVATTFVMPQE-RSDARKLERELKISFKWAEADKGLAKEERN 441


>gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
 gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
          Length = 445

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 197/375 (52%), Gaps = 18/375 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q+  +   L   D+L SAQTG+GKT  F L +   L++   R     
Sbjct: 16  AINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPILQKLIS-TPRIGKDR 74

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++       +   V  GGVS++ +   L+ G  I++ TP
Sbjct: 75  KPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQMMKLRGGVDILIATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +N+S ++ +VLDEAD MLD+GF  DI  ++   PKKR+ L+FSAT S  
Sbjct: 135 GRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPKKRQNLLFSATFSNE 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V + +A  N     +      V    +   +  ++     +  +VF  
Sbjct: 195 IKQLANKLLDNPVTIEVAPRNSASEQVTQFVHHVDKKRKAELLSYMIGRENWQQVLVFTR 254

Query: 253 TRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T+   +R    LAEHL     +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+
Sbjct: 255 TKHGANR----LAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRVLVATDIAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANV 365
           D+  L  V++ EL +  E+ +HR GRTGRA   GM+V ++      + +  E+L ++  V
Sbjct: 311 DIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLKDIEKLLKKP-V 369

Query: 366 SVV----WEPAPSVE 376
            V+    +EP PS++
Sbjct: 370 PVMAIEGYEPDPSIK 384


>gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
 gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
          Length = 435

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+ E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q G  +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+     +P++
Sbjct: 132 QGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+G+ GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGQYGRKGVAI 378


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F ++    L       +      AL
Sbjct: 47  GFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISTLQVL------DTSVRETQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV + +  L     V   VCIGG +V  + R L  G H+VVGTPGR  D 
Sbjct: 101 ILCPTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRKLDFGQHVVVGTPGRTFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   ++K ++LDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 161 IRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPATQVCLVSATLPHEILEMTH 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FCST+  V
Sbjct: 221 KFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + + E  F V A+ G++ Q+ER+  ++  R G+ RV I+TDV ARG+D+P + L+I
Sbjct: 281 DWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVLISTDVWARGLDVPQVSLII 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 341 NYDLPNNRELYIHRIGRSGRYGRKGVAI 368


>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
 gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
          Length = 519

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 134/392 (34%), Positives = 195/392 (49%), Gaps = 50/392 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L++ G   +T +QE  +   L  KD + +A+TGSGKT AF L +   L  E     
Sbjct: 18  LAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILEKLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV 
Sbjct: 73  PVSH-FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240
                   K++ K++    IA    E  Q SD+      + R +L A  DRD  ++  LR
Sbjct: 192 --------KDFMKESSIFPIAKDCLEWSQESDVATVDTLEQRYLLCADYDRDMVLIEALR 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  +N     ++F +T+      +  L+    + V L G + Q+ER  AL   +    R
Sbjct: 244 KYREQNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352
             IATDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+  S+F  P+++  
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLEL 363

Query: 353 ------------------QRRAERLFREANVS 366
                             QR  ER+F + NV+
Sbjct: 364 LGAIEAEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++  R    + +  N  VV E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYN--VVIEELPS 407


>gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 577

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 233/454 (51%), Gaps = 23/454 (5%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L++GA ++VGTPG
Sbjct: 8   PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGTPG 67

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P +
Sbjct: 68  RVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPML 127

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             + + + ++ V V++A +N     +  +  +V   ++D A+  +L       +IVF  T
Sbjct: 128 KKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFVRT 187

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P +
Sbjct: 188 RQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRI 247

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVWE 370
             V + ++  + E+ +HR GRTGRAGRKG ++ ++  N   M R  ER+ + +   +   
Sbjct: 248 THVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQLP 307

Query: 371 PAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
               V   R      E +A++   +   LD      +K+   L    DP  +AA  L+  
Sbjct: 308 LRDQVAEARLAKLGAELEAEK---EHKALDKFAELVEKLQTSL--DIDPATLAAMLLKRQ 362

Query: 425 ---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKA 479
              R      E+  P+     RD+ +      + G     NF    W  + L VG +Q  
Sbjct: 363 QGKRPLFYIGED--PMVEAIERDK-QRRKERREGGRDGGRNFNNQDWDTYQLQVGREQGV 419

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + + ++  L    G+ + SIGAI++    TFV++
Sbjct: 420 QVKDIVGALANELGLGKGSIGAIKLAQGHTFVQL 453


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L +
Sbjct: 46  NLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQ 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D         AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G 
Sbjct: 102 LD--YDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   + +   + ++      
Sbjct: 220 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI++  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  N
Sbjct: 340 ARGINVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQRFYN 399

Query: 365 VSVVWEPAPS 374
           V+V  E  PS
Sbjct: 400 VTV--EELPS 407


>gi|115468814|ref|NP_001058006.1| Os06g0602400 [Oryza sativa Japonica Group]
 gi|113596046|dbj|BAF19920.1| Os06g0602400 [Oryza sativa Japonica Group]
          Length = 484

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 23/331 (6%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLA---------ENDRFSPASA-PLALAIAPTR 84
           L  +D++  AQTGSGKT AF L + S L+A         E   F+ A+A P AL +APTR
Sbjct: 1   LAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTR 60

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           ELA Q+  E +    +TG+ V V  GG  ++ + RDL+ GA I+V TPGRL D +    +
Sbjct: 61  ELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKV 120

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTLAKNY 200
           ++  +K +V+DEAD MLD+GF   I  I++  + P+K  R+ ++FSAT  P I  LA ++
Sbjct: 121 SLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDF 180

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNA-------IVFC 251
             + + + +         I  +  L++  ++   ++++L+    G  N+       +VF 
Sbjct: 181 LSNYIFITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFV 240

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L    F   A+ G+ +QQER +AL+  + G   + +ATDVA+RG+D+P
Sbjct: 241 ETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVP 300

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ++  VI+ +L  + E+ +HR GRTGRAG+ G
Sbjct: 301 NVAHVINYDLPKSIEDYVHRIGRTGRAGKAG 331


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 189/342 (55%), Gaps = 10/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDR 68
           A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L       ++ R
Sbjct: 15  AIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPGGHPDKSQR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L + PTRELA QV    + +YA+    ++ CI GGV ++ + + +  G  +
Sbjct: 75  HGPRQ-PRVLVLTPTRELAAQVHDSFK-VYARDLNFISACIFGGVGMNPQVQAMAKGVDV 132

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  PGRL D + G+G +++S ++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FS
Sbjct: 133 LVACPGRLLD-LAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++     + 
Sbjct: 192 ATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTVRVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 312 GLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMV 353


>gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
          Length = 453

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 202/373 (54%), Gaps = 6/373 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I  A+   G+   T VQ A +   +   D++VS+QTGSGKT AF L   + +  ++   
Sbjct: 11  TILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPALNRVAGQSP-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       L + PTRELA+QV        A   G+     +GGV    + + L     ++
Sbjct: 69  NKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYGAQLKALSRRVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  P+ R+ L+FSAT
Sbjct: 129 VATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQSRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKN 246
           +  ++  LA+   ++  R+ IA    +H++I  +++L A   S +   + ++LR      
Sbjct: 189 LDGSVARLAEKMMREPERIEIAGHRDKHANI-TQSLLYADDASHKMRLLDHLLRDTRLDQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+         L+E  F   AL G+++Q++R+  L  ++ G+ RV +ATDVAAR
Sbjct: 248 AIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R+      +
Sbjct: 308 GIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVHSERHKVRRIEHYIGQT 367

Query: 367 VVWEPAPSVEAIR 379
           +  E    +E  R
Sbjct: 368 ITPETIAGLEPQR 380


>gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT]
 gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus
           129PT]
          Length = 419

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 190/339 (56%), Gaps = 7/339 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ E+G+   T +Q   L   L+ +D+   AQTG+GKT+AF  A    LL +N+  +
Sbjct: 20  VQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNN-IN 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +  P AL +APTREL VQ+  +  +L   TG+   +  GG    ++ + +  G  I++G
Sbjct: 79  SSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIG 138

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188
           T GR+ D+++   + + +++ VVLDEAD M DLGF  DI ++L     P++R  ++FSAT
Sbjct: 139 TTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAKN 246
           +S  +  LA  +  D   V I  E  Q +    R  L   S++D    ++ +L     + 
Sbjct: 199 LSYKVRELAFEHMNDPQYVEI--EPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWPER 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F +T+         L+    +V  L+G++ Q++R + L+   DG   + +ATDVAAR
Sbjct: 257 CIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDILVATDVAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 317 GLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISI 355


>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 446

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 184/330 (55%), Gaps = 9/330 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIA 81
           T +Q+  +   +  KD+L S++TGSGKT+AF L     +     R  P +   P  L + 
Sbjct: 25  TEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY----RSKPFTRRDPRVLILT 80

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA QV  +L  L A T     + +GG + + + + L+N    VV TPGRL DH+  
Sbjct: 81  PTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPMFVVATPGRLADHLEH 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKN 199
           +   +  L+ ++LDEAD MLDLGF   +  I +++  +RR  LMFSAT+  + +  +A  
Sbjct: 141 RSTRLDGLEMLILDEADRMLDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASE 200

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
              +  R++I     +H DI  R +L    D   A+++ IL     K  I+F +TRA   
Sbjct: 201 MLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQDYKQVIIFTATRADTD 260

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R T  L E   + VALSG L+Q +R++ +        ++ + TD+A+RG+D+ ++ LVI+
Sbjct: 261 RLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDIASRGLDIDNVSLVIN 320

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 321 FDMPKHAEEYVHRVGRTGRAGNKGDAISLV 350


>gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 708

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 211/389 (54%), Gaps = 18/389 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L  RG   L  VQ    NP    KDV+  A+TG+GKT +F + L   L  E+      
Sbjct: 141 QLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEKLQGESQERRRG 200

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV ++ + +  K  + V    GG   + +   +++G  I+VGTP
Sbjct: 201 RPPKVLVLCPTRELANQVAKDFKDITRK--LTVGCFYGGTPYNGQIDLMRSGIDILVGTP 258

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----RMLMFSA 187
           GR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK      + L+FSA
Sbjct: 259 GRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDSEDNPQTLLFSA 318

Query: 188 TISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHG 243
           T    +  +AK Y K    ++++  +  Q   + +++ A+    S R   I ++++ Y G
Sbjct: 319 TCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAAVIGDVIQVYSG 378

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++   IVFC T+   +     L   + Q   +L G++ Q++R   L+  R+G  +V +AT
Sbjct: 379 SQGRTIVFCETKKEANEL--ALNASIKQDCQSLHGDIPQKQREITLKGFRNGSFKVLVAT 436

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    +  + +   + +
Sbjct: 437 NVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRKEEYQLRHVEQ 496

Query: 362 EANVSVVWEPAPSVEAI---RERDAQRIL 387
           +A ++      P+   I     +DA R L
Sbjct: 497 KAGITFKRVGVPTATDIIKASSKDAMRCL 525


>gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L       +R+ 
Sbjct: 105 AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 163

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 164 -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 222

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 223 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 282

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  +  
Sbjct: 283 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 342

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA RG
Sbjct: 343 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 402

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 403 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 440


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 180/347 (51%), Gaps = 11/347 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ++  AL E GY   + +QE  + P L  +DVL  AQTG+GKT AF   +  
Sbjct: 3   FEDLGLCPQILA-ALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61

Query: 61  TLLAENDRFSPASA-PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L  +     PAS  P+ AL + PTRELA+Q+G   E       +  AV  GGV    + 
Sbjct: 62  RLSNK-----PASGHPIRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQV 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D  +   ++++ L+  VLDEAD MLD+GF  D++ IL   P+
Sbjct: 117 EKLGKGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L FSAT+   I  L  +      RV +   +     I      V   ++   +  +
Sbjct: 177 KKQTLFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVYFVDRGNKTKLLSLL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G KNA+VF  T+   ++  + L +      A+ G  SQ  R  AL   + G  R  
Sbjct: 237 MDQLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATD+AARG+D+ +L  V +  L   PE  +HR GRTGRAG  G +V
Sbjct: 297 VATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAV 343


>gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9]
 gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           SS9]
          Length = 419

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 185/349 (53%), Gaps = 3/349 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T VQ   +   L  +DVL SA TG+GKT AF L +   LL +  R  P  
Sbjct: 16  AIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQHLL-DFPRKKPGP 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+Q+      L   T + +    GG+S       L     IVV TPG
Sbjct: 75  ARV-LILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLGKTQDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL +++  +  +   ++ ++LDEAD MLD+GF   +E I      +R+ L+FSAT+    
Sbjct: 134 RLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKG 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +   ++   K+ V VN A   R+   I    +     D   A++  +  H A+ +IVF  
Sbjct: 194 VREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIVFVK 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++     LA    +   + GE++Q  R+NA+   RDG   + IATDVAARGIDLPD
Sbjct: 254 TRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILIATDVAARGIDLPD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  VI+ ++    +  LHR GRT RAG+KG+++ ++  + Q   ER+ R
Sbjct: 314 ISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIERVSR 362


>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
          Length = 501

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 89  VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427


>gi|268679106|ref|YP_003303537.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617137|gb|ACZ11502.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 407

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 193/350 (55%), Gaps = 10/350 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++   + +A+   G+ + T +Q++++   L  KD++  A TGSGKT +F L +     
Sbjct: 3   FSHLSSPLQKAVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPILENWS 62

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRER 118
           A+        A +  L + PTREL VQV         +L+ K  VV    IGG  +  + 
Sbjct: 63  AQTHE---GKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSV--IGGEKIGEQL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            ++Q G  IVV T GRL D +  K +++S +   VLDEAD+MLDLGF  ++  IL+S P+
Sbjct: 118 LEIQKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT    +  +A      A+ V+I +E      I  R + V   +R   +  +
Sbjct: 178 KRQNLLFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLREL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR +     +VF + + +         +H F   +  G+L+Q++R+  LQ  ++ + RV 
Sbjct: 238 LRENDWDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ATD+A+RG+D+ D+  VI+ +L  + E+ +HR GRTGRAG++G+++ +I
Sbjct: 298 FATDIASRGLDIDDVSCVINFDLPRSSEDYIHRIGRTGRAGKEGLAISLI 347


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 173/336 (51%), Gaps = 5/336 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL +  Y   T +Q   +   L   D+L  AQTG+GKT AF + +   +    +R S
Sbjct: 12  IRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQKI---EERIS 68

Query: 71  PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P   AL + PTRELA+Q+G         T V   V  GGV    +   L+ G  ++
Sbjct: 69  RGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALERGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I    + +  L+  VLDEAD MLD+GF  DI+ IL   P+KR+ L FSAT
Sbjct: 129 IATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKRQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LA     +  +V +   +     ID     V   ++ N + N+L     ++ +
Sbjct: 189 MPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLEDRSLESVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  +VL +      A+ G   Q  R  AL   +D   RV IATD+A+RGI
Sbjct: 249 VFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIATDIASRGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+  L  VI+ +L + PE  +HR GRTGRAGR G++
Sbjct: 309 DVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIA 344


>gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
 gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
          Length = 433

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65
           PQ I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +E
Sbjct: 18  PQ-ITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTSE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 77  HEGRKP-NQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLSKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLLDCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 233 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R  NV V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVV--EELPS 407


>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 555

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 180/332 (54%), Gaps = 3/332 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ + GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L     R  
Sbjct: 60  IQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR-- 117

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ 
Sbjct: 118 -ARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIA 176

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D     GL ++  + +V+DEAD MLD+GF  DIE I+      R+ L FSAT++
Sbjct: 177 TPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMA 236

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LA  + ++   + ++  +   + I+   V+V  +D+   +  +LR    +NAIVF
Sbjct: 237 PEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDAVQNAIVF 296

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V    K L +H F   AL G+L Q  R   L+  + G  ++ + +DVAARGID+
Sbjct: 297 CNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDI 356

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             L  V + +L  + E+ +HR GRTGRAGR G
Sbjct: 357 GGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSG 388


>gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana]
 gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
          Length = 456

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 188/345 (54%), Gaps = 7/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67
           +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +   LL     +E  
Sbjct: 22  KACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPK 81

Query: 68  RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+   ++   L    H
Sbjct: 82  KGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPH 141

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  IL+  P +R+  +F
Sbjct: 142 VIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V++  AS+      +  +   VA   +D  +V IL      
Sbjct: 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPES 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T         VL    F+ + +SG+++Q +R  AL   + G   + + TDVA+
Sbjct: 262 TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q
Sbjct: 322 RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 195/369 (52%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 118 FPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ- 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+  E    + K+  +   C+ GGV    + R+L  GA
Sbjct: 177 PLLSPGDGPIVLVLAPTRELAVQIQTECS-KFGKSSRIRNTCVYGGVPRGHQIRELTRGA 235

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 236 EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 295

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA++Y  D ++VN+ S      H+      V+  +  RD  + ++     
Sbjct: 296 SATWPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLKHLETASE 355

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K++  ++F ST+ +    T+ L +  +  +A+ G+ +Q ER   LQ  R G + + +AT
Sbjct: 356 DKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGNSPIMVAT 415

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++ F    N    A+   
Sbjct: 416 DVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKGMGAQLIS 475

Query: 359 LFREANVSV 367
           + REAN  +
Sbjct: 476 IMREANQQI 484


>gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 430

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 190/347 (54%), Gaps = 11/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G    T +Q+  + P L  +D++  AQTGSGKT+A+ L L      +    +P +
Sbjct: 19  ALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLL-----QQRCLAPDT 73

Query: 74  APL---ALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
           AP    AL + PTRELA QV   L  L A     +   V  GG S++ +   L+ GA +V
Sbjct: 74  APRVLGALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADLV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L ++ +  +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT
Sbjct: 134 VATPGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PAI +LAK   +D +RV I +   Q   I   A+ V    R   + ++L+ H     +
Sbjct: 194 FPPAIASLAKRRLRDPLRVTIDATPEQAPAIAQCAIAVDAGQRTQLLRHLLQEHAWPQLL 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R S  +  + L++     + L GELSQ  R   L+  +    +V +ATD+A RGI
Sbjct: 254 VFVASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           D+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360


>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 451

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 174/335 (51%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  ALS  GY   T +QE  +   L+  D+L  AQTG+GKT AF + +   L        
Sbjct: 12  ILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPILQLLQLNKGAER 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G           +   V  GGV    +   L+ G  I++ 
Sbjct: 72  APRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVGALKMGVDILIA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + ++ L   VLDEAD MLD+GF  D++ ++   P KR+ L FSAT+ 
Sbjct: 132 TPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAKRQSLFFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I  LA +   +   V +   +     I      V   ++ + ++++L+    K A+VF
Sbjct: 192 ESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLLQDKSIKTALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  ++L +   +  A+ G  SQ  R NAL+  +D   RV +ATD+AARGID+
Sbjct: 252 TRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTRVLVATDIAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            DL LVI+ E+ + PE  +HR GRTGRAG  G +V
Sbjct: 312 DDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAV 346


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 184/328 (56%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 569

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 185/343 (53%), Gaps = 5/343 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ +  AL+E G V   ++QE  L   L   D++  A+TG+GKT+AFG+ +   + A+++
Sbjct: 9   PETVA-ALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVVQVVQAQDE 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL + PTREL VQV  ++       G+ V    GG +   +   L++G  I
Sbjct: 68  --GADGHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRSGVDI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  R K L+++ ++ +VLDEADEMLDLGF  D+E I+   P++R  ++FSA
Sbjct: 126 VVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTMLFSA 185

Query: 188 TISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   +  LA+ +      VR     E R   +           D+   +  +L+     
Sbjct: 186 TMPGPVIGLARRFMSRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLARVLQATDRG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  TR +  +    LA   F   A+ G+L Q +R  AL+  R G+  V +ATDVAA
Sbjct: 246 LAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  +  V++ +   +    LHR GRTGRAG  G+++  +
Sbjct: 306 RGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFV 348


>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 471

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L + E       
Sbjct: 15  AIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHKGKG 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V T
Sbjct: 75  RRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMMKLRGGVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     +   V +   N     +      V    +   +  ++  +  +  +VF 
Sbjct: 195 EIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNWQQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+ 
Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIAARGLDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368
            L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     + 
Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374

Query: 369 ---WEPAPSVEA 377
              +EP PS++A
Sbjct: 375 IEGYEPDPSIKA 386


>gi|154288372|ref|XP_001544981.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
 gi|160380612|sp|A6QXC1|DBP3_AJECN RecName: Full=ATP-dependent RNA helicase DBP3
 gi|150408622|gb|EDN04163.1| hypothetical protein HCAG_02028 [Ajellomyces capsulatus NAm1]
          Length = 487

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S      A+ I PTRELA+Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIHDQL-VK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +   GV +A   GG S   +RR L+  A ++V TPGRL D    + LN+  +K +VLDEA
Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211
           D MLD GF  DI+ I+ + P  +KR+ +MF+AT   ++  LA  + K+ V V I    +S
Sbjct: 225 DRMLDKGFEQDIKDIVSAMPSSRKRQTVMFTATWPISVRKLATTFMKEPVTVTIGGDLSS 284

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266
           + R ++ I     +V   ++++ ++++L +Y   +NA    +VFC  +   +R  + +  
Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F+V  + G+++Q ER N+L   + G   V +ATDVAARG+D+P ++LV++       E
Sbjct: 345 KGFKVAGIHGDMNQTERFNSLDAFKSGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +HR GRTGRAG  G+++ +  +N
Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 188/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           G+ + +++Q   +    + +D +  AQ+G+GKT  F +++     T L E          
Sbjct: 44  GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  +     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEAD++L  GFRD I  +    P   ++++ SAT+   + +
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPATQVVVLSATLPYDVLS 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 182/338 (53%), Gaps = 6/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L     R   A 
Sbjct: 15  AVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV    +       + VA+ IGGVS   +   L  G  +++ TPG
Sbjct: 72  MPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAKLGRGVDVLIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I
Sbjct: 132 RLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPAEI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILR-YHGAKNAIVF 250
             + + +  + V+V ++        +    +       ++   +  +LR     KNAI+F
Sbjct: 192 RRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQLLRDAKDLKNAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ +  V+   K L +H F   AL G++ Q  R  AL+  R G   + +A+DVAARG+D+
Sbjct: 252 CNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPLLVASDVAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  V + ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 312 PEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIV 349


>gi|149239594|ref|XP_001525673.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451166|gb|EDK45422.1| hypothetical protein LELG_03601 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 461

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 16/307 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L  KDV+  A+TGSGKT AFG+ A+ + + ++N   S       L I+PTRELA+Q+   
Sbjct: 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLS------VLCISPTRELALQIYDN 214

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           LE L   T V      GGVS   + + ++NGA++VV TPGRL D I    +++S +  +V
Sbjct: 215 LEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLV 274

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           LDEAD ML+ GF +DI+ I+ S+P + R+ LMF+AT    +  LA N+    V+V I   
Sbjct: 275 LDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFMNQPVKVTIGDR 334

Query: 213 NRQHSDIDYRAVLVALSD---RDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVL 264
           +   ++     ++  L D   ++  ++N+L +Y    N     +VF   +   SR   +L
Sbjct: 335 DELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLL 394

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             + F+V A+ G+LSQQ+R+ ALQ  + G   + +ATDVAARG+D+P+++ VI+      
Sbjct: 395 HRNKFKVAAIHGDLSQQQRTQALQSFKSGECNLLLATDVAARGLDIPNVKYVINLTFPLT 454

Query: 325 PENLLHR 331
            E+ +HR
Sbjct: 455 IEDYVHR 461


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 180/343 (52%), Gaps = 5/343 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + + G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L +APTRELAVQ+ +E     A + +      GGV   ++ RDLQ G  
Sbjct: 179 PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 ILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  LA +Y  D ++V I S   +  H+      VL     RD    ++      
Sbjct: 299 ATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQD 358

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           +++  I+F ST+ +    T  L    +  +A+ G+ +Q ER   L   R GR+ + +ATD
Sbjct: 359 QDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++
Sbjct: 419 VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAI 461


>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
 gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
          Length = 454

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARCNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 428

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 193/350 (55%), Gaps = 16/350 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71
           +++ G+   T +Q  +L   L   D +  AQTG+GKT AF + + + LL    +  RF  
Sbjct: 38  IADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRF-- 95

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130
           A  P AL +APTRELA+Q+ ++ + L   T + V   +GG++ +R++  LQN    I+V 
Sbjct: 96  AGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQERLQNKLIDILVA 155

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           TPGRL D  + + L +  ++ +VLDEAD MLD+GF  D++ I+  +PK   R+  +FSAT
Sbjct: 156 TPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQTQLFSAT 215

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  +  L++ + +DA  V I         ++ +  +    D+   + N++        I
Sbjct: 216 FNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITGMNMDKVI 275

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + R    R +  L +   +V  +SG++ Q +RS  L+  R G  +V IATDVA RGI
Sbjct: 276 VFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGI 335

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
            +  +  V++  L  +PE+ +HR GRTGRAG  GMS+        F++P+
Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPE 385


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E I +++ + +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   +   +L
Sbjct: 205 LEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKML 264

Query: 64  AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            +    +P  +         P+AL ++PTRELA+Q   E       TG+   V  GG  V
Sbjct: 265 NDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEV 324

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +  DL  G+ I+V TPGRL D I RGK +N+  +K ++LDEAD MLD+GF   I  I+
Sbjct: 325 RSQIMDLDRGSDIIVATPGRLRDLIDRGK-VNLKLIKFLILDEADRMLDMGFAPQIREIV 383

Query: 174 DSSP-----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           + S        R+ +MFSAT    I  LAK++  + + + +         I  R V    
Sbjct: 384 EDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEE 443

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER +AL+
Sbjct: 444 DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 503

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G++   +
Sbjct: 504 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563


>gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
 gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
          Length = 432

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 185/336 (55%), Gaps = 4/336 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL +  +   T +Q   L   L   DV+  AQTG+GKT AF L+L   L+  N     A
Sbjct: 22  EALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHYLMT-NPVHPKA 80

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGT 131
             P A+ +APTRELA+Q+ +E++ L A TG+V     GG S+  +++  Q     +++GT
Sbjct: 81  KGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQACNVDVIIGT 140

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATI 189
           PGR+ D  + K   + +++  VLDEAD M DLGF DD+ ++L   P   +R  L+FSAT+
Sbjct: 141 PGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAYERLNLLFSATM 200

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  LA  +      V I S+    ++I +     A  ++   ++ +      + +++
Sbjct: 201 PQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTPLLLGLFARERPERSMI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  + R + VL  + +   ALSG+++Q++R   ++  ++G   + +ATDVAARGI 
Sbjct: 261 FLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVNIVVATDVAARGIH 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L    E+ +HR GRT RAG  G ++
Sbjct: 321 IDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAI 356


>gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 415

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 185/338 (54%), Gaps = 2/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL   D  
Sbjct: 19  IVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHHLLTHQDPN 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G  I++
Sbjct: 79  LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSA 187
           GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI ++L     P+ R  ++FSA
Sbjct: 139 GTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQSRLTMLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA     D   + I  E +    I       +  D+   ++ ++     +  
Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKEELFYPSNQDKMALLLTLMEDEWPERC 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
 gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
          Length = 549

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++ +GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   LL+   R  P 
Sbjct: 15  KAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ-LLSAGKRAQPN 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  ++V TP
Sbjct: 74  QV-RTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQMMKLRRGVDVLVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +  ++L+ +VLDEAD MLD+GF  DI+ I+   PK+R+ LMFSAT S  
Sbjct: 133 GRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQNLMFSATFSDD 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    + + +++   N     +      V    +   +  ++  +    A+VF  
Sbjct: 193 IRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTVDKKQKAGVLTRLIHDNKWGQALVFTK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++ TK L        A+ G  SQ  R+ AL   + G  R+ +ATD+AARG+D+  
Sbjct: 253 TKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRILVATDIAARGLDIEQ 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 313 LPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLV 348


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|162661036|gb|EDQ48640.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 168/298 (56%), Gaps = 6/298 (2%)

Query: 77  ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            L + PTRELA QV  E+  L  A+  V V    GGV +  +   L+NGAH++VGTPGR+
Sbjct: 11  GLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPGRV 70

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+    LN+  L  +VLDEAD MLD+GF DDI  +    P +R+ L+FSAT    I  
Sbjct: 71  IDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGIAK 130

Query: 196 LAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           LA  + +D V V +A+   QHS   I+ R   V   +R  ++  +L +   ++ + FC+T
Sbjct: 131 LAARFMRDPVTVKVAA---QHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFCNT 187

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A      ++L    +  + L G+L Q++R   L    +G   V +ATDVAARG+D+ +L
Sbjct: 188 KARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVTNL 247

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
             VI+ +++ +PE  +HR GRTGRAG+KG+++ +   +       + +      VW P
Sbjct: 248 GAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVWYP 305


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 5/359 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P  I   ++  G+   TS+Q       L+ +D++  A+TGSGKT+AF L  A   +
Sbjct: 406 FSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAF-LLPAIVHI 464

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P+ L + PTRELA+Q+  E +   + + +      GGV  +++ + L++
Sbjct: 465 NAQPYLETGDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRS 524

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D +   G N+  +  +VLDEAD MLD+GF D I  IL      ++ L
Sbjct: 525 GVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTL 584

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           MFSAT   ++ +LA ++  D ++V I S E   +  +     +    D+   +   L+  
Sbjct: 585 MFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEICEKMDKQTKLFQYLKSI 644

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             GAK  I+F  T++ V    + ++   F+  A+ G+ +Q ER  AL   +DG+ +  IA
Sbjct: 645 EPGAK-CIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIA 703

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  +   +  R A  L
Sbjct: 704 TDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDL 762


>gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980]
 gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 816

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 193/371 (52%), Gaps = 29/371 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + +++ GY   ++VQ A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 386 LPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 445

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + F+    P A+ +APTRELA Q+  E +      G      +GG S+  +  +L+NG
Sbjct: 446 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 505

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I++ TPGRL D I  + L +     +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 506 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 565

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             + R+ +M++AT+ PA+  +AK Y +    V I +       +
Sbjct: 566 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 625

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   VA  D+    +N +   G      IVF + + +     + +    F  V L G 
Sbjct: 626 EQRVEFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 685

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 686 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 745

Query: 338 AGRKGMSVFVI 348
           AG+ G+++  +
Sbjct: 746 AGKSGVAITFL 756


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E NV++ 
Sbjct: 547 ERNVNIT 553


>gi|182627117|ref|ZP_02954835.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177907506|gb|EDT70164.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 324

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/311 (37%), Positives = 172/311 (55%), Gaps = 7/311 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-P 71
           +A+ + G+   + +Q   +   L   D++  AQTG+GKT AFG A+ +     N  FS  
Sbjct: 17  KAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIIN-----NADFSGK 71

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             +P AL +APTRELA+QV  EL  L     + V    GG  + R+ R L+NG  IVVGT
Sbjct: 72  KKSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRALKNGVDIVVGT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D IR K L ++ +  +VLDEADEML++GF DD+E I+ S    R+ L+FSAT+ P
Sbjct: 132 PGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQTLLFSATMPP 191

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            I  LA+NY K D   + I   +   S I+     +   DR   +  +L +     AI+F
Sbjct: 192 QIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLDFDEPNAAIIF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V    + +    + V  + G++SQ  R   L+  ++G     +ATDVAARGID+
Sbjct: 252 CKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVATDVAARGIDV 311

Query: 311 PDLELVIHAEL 321
             +  VI+ +L
Sbjct: 312 ESVTHVINYDL 322


>gi|229490988|ref|ZP_04384821.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
 gi|229322104|gb|EEN87892.1| dead/deah box helicase [Rhodococcus erythropolis SK121]
          Length = 385

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/318 (38%), Positives = 172/318 (54%), Gaps = 8/318 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELE-- 95
           D++  A+TG GKT  FG+ L   ++ AEN        P AL I PTREL +QV R+LE  
Sbjct: 7   DLIGQARTGMGKTFGFGVPLLHRIVTAENGTAVLDGTPRALIIVPTRELCIQVARDLENA 66

Query: 96  --WL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
             +L     G+ V    GG     +   LQ G  +VVGTPGRL D      L +  +  +
Sbjct: 67  SKYLRVGDRGLQVLPIYGGRPYEAQISALQKGVDVVVGTPGRLLDLANQSHLILGKVGVL 126

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIA 210
           VLDEADEMLDLGF  DIE ++   P KR+ ++FSAT+   I TLA+ +  Q   +R   A
Sbjct: 127 VLDEADEMLDLGFLPDIERLMGMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEEA 186

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
             +  H             D+   +  +L+  G    ++F  T+ +  +    LAE  F 
Sbjct: 187 ESSAVHDRTSQHIYRAHALDKAEMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFS 246

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           V A+ G+L Q  R  AL+  R+G+  V +ATDVAARGID+ D+  VI+ +   + +  +H
Sbjct: 247 VGAVHGDLGQIAREKALKGFRNGKVDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVH 306

Query: 331 RSGRTGRAGRKGMSVFVI 348
           R GRTGRAGR G++V ++
Sbjct: 307 RIGRTGRAGRTGIAVTLV 324


>gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 606

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 216/379 (56%), Gaps = 18/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+   G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF L  A  +L++
Sbjct: 133 NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAF-LIPAIEMLSQ 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     +CIGG +   E   L+
Sbjct: 192 L-RFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQT---FGICIGGANRSAEADKLR 247

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G ++++ TPGRL DH+   +G    +L+++V+DEAD +L++GF D++  I+   P +R+
Sbjct: 248 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 307

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
            ++FSAT +  +  LA+ + +   + +N+     +HS +        L D D     + +
Sbjct: 308 TMLFSATQTTKVEDLARISLKAGPLYINV-DHRAEHSTVQGLEQGYVLCDSDTRFRLLFS 366

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ H  K  IVF S+ ASV  ++++L      V+ L G+L QQ R+N      + ++  
Sbjct: 367 FLKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGT 426

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRR 355
            I TDVAARG+D+P+++ VI  +   +P + +HR GRT R A  KG S+ F++P  +   
Sbjct: 427 LICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVG-- 484

Query: 356 AERLFREANVSVVWEPAPS 374
             +L +E+ V +V    P+
Sbjct: 485 FLKLLKESRVPLVEFELPA 503


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 11/357 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      FS 
Sbjct: 223 VAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADGVAASSFSE 282

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG+S   + RDL  G +++ GT
Sbjct: 283 QQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCNVLCGT 342

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +V+DEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 343 PGRLMDMIGRGK-VGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEERQTLMFS 401

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ +KD + + +       SD++ + V V    + + +++IL+  G +
Sbjct: 402 ATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDILKNTGTE 461

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L        ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 462 RTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 521

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RG+D+ D++ V++ +L +N ++ +HR GRTGR G  G +V F  P+   + A  L +
Sbjct: 522 RGLDIKDVQHVVNFDLPNNIDDYVHRIGRTGRCGNTGQAVSFYDPEQDNQLARSLVK 578


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 192/362 (53%), Gaps = 30/362 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + ++     P  A    
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDG----PGEALRAM 254

Query: 75  ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H++V T
Sbjct: 255 KQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVAT 314

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSA 187
           PGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +MFSA
Sbjct: 315 PGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSA 374

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
           T    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   G  + 
Sbjct: 375 TFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSL 434

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT VAAR
Sbjct: 435 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 494

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E N++
Sbjct: 495 GLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNERNIN 542

Query: 367 VV 368
           + 
Sbjct: 543 IT 544


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 195/360 (54%), Gaps = 16/360 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-------LAENDRFSP--ASA 74
           T VQ+  +    + +D++  AQTGSGKT  F   + S L       L E+ R S      
Sbjct: 162 TPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCY 221

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA+Q+  E +    ++ V   V  GG  + ++ RD+  G +++V TPGR
Sbjct: 222 PSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQMRDMDRGCNLLVATPGR 281

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATIS 190
           L D +    +++ ++K +VLDEAD MLD+GF   I  I++     S   R+ LMFSAT  
Sbjct: 282 LNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVNDRQTLMFSATFP 341

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+++ KD + +++        +I  + + V   D+++A+++IL        +VF
Sbjct: 342 REIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDGLTLVF 401

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    + T  L    F+  A+ G+ +Q ER  AL   R+G A + +AT VAARG+D+
Sbjct: 402 VETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNGIANILVATAVAARGLDI 461

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREANVSV 367
           P++  VI+ +L ++ ++ +HR GRTGRAG  G++      N    A+    L  EAN  V
Sbjct: 462 PNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMDLLTEANQEV 521


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 173/340 (50%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +QE  +   L+ +D+L  AQTG+GKT AF + +   L   
Sbjct: 7   NLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPMLQLLSKP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          AL + PTRELA+Q+    +       +   V  GGV    +   L  G 
Sbjct: 67  HTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTDALHRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +N+  ++  VLDEAD MLD+GF  D++ ++   P KR+ L F
Sbjct: 127 DILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAKRQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     + V+V +   +     I      V   D+   +++IL+    +
Sbjct: 187 SATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHILQDKTIE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    R  K L +   +  A+ G  SQ  R  AL   +    R+ +ATD+AA
Sbjct: 247 TALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  VI+ EL + PE  +HR GRTGRAG  G ++
Sbjct: 307 RGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTAL 346


>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
 gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 476

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L + E       
Sbjct: 15  AIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQHKGKG 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V T
Sbjct: 75  RRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     +   V +   N     +      V    +   +  ++  +  +  +VF 
Sbjct: 195 EIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNWQQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+ 
Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIAARGLDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368
            L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     + 
Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374

Query: 369 ---WEPAPSVEA 377
              +EP PS++A
Sbjct: 375 VEGYEPDPSIKA 386


>gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25]
 gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 407

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 193/348 (55%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL
Sbjct: 23  FKLAPELM-HAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLL 81

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + 
Sbjct: 82  QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 139

Query: 121 LQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 140 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 199

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  D   V I + N    +++     VA +D+   + N
Sbjct: 200 AERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYN 259

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV
Sbjct: 260 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 319

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 320 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSI 367


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 300 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 358

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 359 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 418

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 419 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 478

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 479 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 538

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 539 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 598

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 599 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 646

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 647 ERNINIT 653


>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 621

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 189/352 (53%), Gaps = 19/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   +      F+PA
Sbjct: 110 DALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLERV------FAPA 163

Query: 73  SA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL +QV ++L    +  GV V    GGV+   +   L+ G  I+
Sbjct: 164 EGGDGTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYEPQIEALRTGVEIL 223

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P++R+ ++FSAT
Sbjct: 224 VGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEERQTMLFSAT 283

Query: 189 ISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +   I  L++ + +  V ++         + Q   + YR   +   ++   +  IL+  G
Sbjct: 284 MPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSL---NKIEIVARILQAKG 340

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ +  R    L    F V A+ G+L Q  R  AL+  R G+    +ATDV
Sbjct: 341 RGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTLVATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           AARGID+  +  V++ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 401 AARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 452


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 179/338 (52%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L   N R +
Sbjct: 12  ILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--ANGRPA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++   AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA ++V 
Sbjct: 70  RSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRMRKGADVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT S
Sbjct: 130 TPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V +++   N+    +      V    + N +  +L     K  +VF
Sbjct: 190 DEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNERNWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 250 TKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 DQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLV 347


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 187/334 (55%), Gaps = 19/334 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +A+  +L   L E          
Sbjct: 50  GFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQSLDISLRETQ-------- 101

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELAVQ+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+
Sbjct: 102 -ALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 160

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  
Sbjct: 161 FDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILE 220

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251
           +   +  D +R+ +  +      I  +   VA+ DR+    + + ++        A++FC
Sbjct: 221 MTSKFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLCDLYDTLTITQAVIFC 277

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR  V    + L E  F V ++ GE+ Q+ER   ++  R G +R+ I+TDV ARG+D+P
Sbjct: 278 NTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARGLDIP 337

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + LV++ +L +N E  +HR GR+GR GRKG+++
Sbjct: 338 QVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 [Ciona intestinalis]
          Length = 449

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 194/359 (54%), Gaps = 18/359 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E   + G+   + +QE  +   L+  DV+  A+TGSGKT AF + +   LL    R 
Sbjct: 30  VLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQALLENPQRL 89

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  + + L +  G+   V +GGV +  ++  L    H+VV
Sbjct: 90  ------FALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQIILAKKPHVVV 143

Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+ + KG  +  +K +VLDEAD +L++ F  +++ IL   P++RR  +FSAT
Sbjct: 144 ATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRERRTFLFSAT 203

Query: 189 ISPAITTLAKNYQKDAVR--VNIASENRQHS-DIDYRAVLVALS-DRDNAIVNILRYHGA 244
           ++  +    K  Q+ A+   V  A  N+ H+ D  ++  L   S D+D  +  ++     
Sbjct: 204 MTGKV----KKLQRAALTKPVKCAVNNKYHTVDKLFQYYLFLPSKDKDCYLAAVVNELAG 259

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC T A+  R   +L       V L G++SQ +R  AL   +     + +ATDVA
Sbjct: 260 NAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILVATDVA 319

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           +RG+D+P +++VI+ ++ +  ++ +HR GRT RAGR G SV  + Q    + +R E L 
Sbjct: 320 SRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRIEELI 378


>gi|192359487|ref|YP_001981876.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190685652|gb|ACE83330.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 493

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 207/369 (56%), Gaps = 10/369 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E+GY   T VQ+A +   L  K++LVS++TGSGKT AF L     +LA++   +P 
Sbjct: 41  KAIAEQGYEQPTEVQQAAIPRALEGKNLLVSSKTGSGKTAAFLLPCLQQILAQS-AVNPR 99

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S  L L + PTRELA Q+ +  + L   T + V    GG  +  ++  L+    IVV TP
Sbjct: 100 STRL-LILTPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQKALLRKNPEIVVATP 158

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
           GRL +H+  K  + S L+ +VLDEAD MLD+G  +D+  I++S    R+ L+FSAT+   
Sbjct: 159 GRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDAARQTLLFSATLEQK 218

Query: 192 AITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAI 248
            +  L K     +A  + I   + Q   I+ + VL A  D+  +   V +L     + AI
Sbjct: 219 GLRHLIKQVITGEAEEIYIEDSSNQ---IEQQMVL-ADDDKHKERLAVALLNRAEYQKAI 274

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+   S+   +L  +  +  AL G+++Q +R   L+  R G+ RV +ATDVAARG+
Sbjct: 275 VFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVLVATDVAARGL 334

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  ++LVI+ E++ + +  LHR GRTGRA + G +V  +  +     + + R   VS+ 
Sbjct: 335 DIDGVDLVINLEMAHSGDEYLHRVGRTGRADQPGRAVSFVSASEWNLTKSIERYLKVSLQ 394

Query: 369 WEPAPSVEA 377
               P +EA
Sbjct: 395 TIQIPGLEA 403


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 187/334 (55%), Gaps = 19/334 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +A+  +L   L E          
Sbjct: 50  GFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAVLQSLDISLRETQ-------- 101

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELAVQ+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+
Sbjct: 102 -ALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRV 160

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  
Sbjct: 161 FDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILE 220

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFC 251
           +   +  D +R+ +  +      I  +   VA+ DR+    + + ++        A++FC
Sbjct: 221 MTSKFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLCDLYDTLTITQAVIFC 277

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR  V    + L E  F V ++ GE+ Q+ER   ++  R G +R+ I+TDV ARG+D+P
Sbjct: 278 NTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRLLISTDVFARGLDIP 337

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + LV++ +L +N E  +HR GR+GR GRKG+++
Sbjct: 338 QVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 427

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/321 (35%), Positives = 181/321 (56%), Gaps = 1/321 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+  A++E+GY   T VQ   +   L+  DV+ +AQTG+GKT  F L +    L++N   
Sbjct: 11  VLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPMLER-LSQNRPE 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA QV   ++    K  +  AV  GGV ++ + + L+ G  IVV
Sbjct: 70  GGRRRVRALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQIQTLRRGVDIVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+    +++S ++ +VLDEAD MLD+GF  DI  ++ + PK+R+ LMFSAT 
Sbjct: 130 ATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVPKQRQTLMFSATF 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA+   ++  ++ +A+ N    +++ R   V+  ++   + N+++    +  +V
Sbjct: 190 SKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRVHPVSRGEKRALLSNLIQDGDWRQVLV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  + L +      A+ G  SQ  R+ AL   + GR RV +ATD+AARG+D
Sbjct: 250 FTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGRVRVLVATDIAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLH 330
           +  L  V++ EL + PE+ +H
Sbjct: 310 IDQLPHVVNYELPNVPEDYVH 330


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 15/341 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------AENDRFS 70
           Y   T VQ+  +    +++D++  AQTGSGKT +F + + S +           +N+R +
Sbjct: 354 YTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNRNN 413

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
               P+AL +APTRELA Q+  E      ++ V   V  GG  +  + RDL + G H++V
Sbjct: 414 RKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPERGCHLLV 473

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMF 185
            TPGRL D +    + + H++ VVLDEAD MLD+GF   I  I+  D+ P    RR LMF
Sbjct: 474 ATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDTMPPTGDRRTLMF 533

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G  
Sbjct: 534 SATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFLLDLLNASGPD 593

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+         L    +    + G+ SQ+ER  AL+  R G+  V +AT VA
Sbjct: 594 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 653

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 654 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 694


>gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 436

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 187/343 (54%), Gaps = 6/343 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E++   P + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   ++ G
Sbjct: 76  EHEGRKP-NQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLGKIEEG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182
           A I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK R  
Sbjct: 135 ADILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 182/346 (52%), Gaps = 6/346 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  AL  +GY + T +Q   +   L  +D+L  AQTG+GKT AF L     L A    
Sbjct: 11  EPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPSLHRLAANPQP 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PAS  + L ++PTRELA Q+   ++       ++V    GGV + ++ R L  G  I+
Sbjct: 71  RKPASCRM-LVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQARRLVPGVDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  + L +   +  VLDEAD+M+DLGF   ++ + +  PK R+ L FSAT
Sbjct: 130 VATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPKTRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILRYHGA 244
           +  AI  L K +  + VRV +A  +     ++     +  +++   +     ++L+    
Sbjct: 190 MPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQYVTFINQAEKQALLTLRIRDLLKTKEL 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  T+    R  + L+       A+ G  SQ +R+ AL+  R G   V +ATD+A
Sbjct: 250 DRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGSCPVLVATDIA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           ARGID+  +  V + EL + PE  +HR GRT RAG  G+++ F  P
Sbjct: 310 ARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAP 355


>gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis
           elegans]
 gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans]
          Length = 730

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 29/374 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
            P  + +A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    T L 
Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367

Query: 65  ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ +L+  P      
Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+S AI  LA+ Y +    V+I S  +    
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V    +   +V +L        I+F + +      +K L +  F+   L G  
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q +R  ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667

Query: 339 GRKGMSV-FVIPQN 351
           G+ G ++ F+ P +
Sbjct: 668 GKHGKAITFLTPDD 681


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P+++  A+   GY   + +Q   +   L   DVL  AQTG+GKT AFGL 
Sbjct: 1   MTTFNDLGLDPKLLA-AVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   LL  +D+  P     AL +APTREL  Q+   L      T + V   +GG S++++
Sbjct: 60  LVQQLLGGHDKREPKGV-RALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L  G  I+V TPGRL D +  K + +     +VLDEAD+MLD+GF   +  I     
Sbjct: 119 VQILAKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELG 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ ++FSAT+   +  L++ Y  D V+V +A+  +    I  + V  A    D   ++
Sbjct: 179 TPRQTMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKI-TQGVHWAQDKGDK--ID 235

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           IL+ + +      ++VF  T+    R  K L    F  V++ G  SQ +R  AL   RDG
Sbjct: 236 ILKAYLSDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDG 295

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ARV +ATDVAARGID+P +  V + +L +  EN +HR GRT RAG  G ++ ++
Sbjct: 296 KARVLVATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLV 350


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 802

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 198/377 (52%), Gaps = 9/377 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I + +   G+   T++Q       L+ +D++  A+TGSGKT+AF L     + A+
Sbjct: 404 HFPPYIMKEIVAAGFAAPTAIQAQSWPVALKGRDMIGLAETGSGKTLAFLLPGVVHINAQ 463

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELA+Q+  E +   + + +      GGV   ++   L++G 
Sbjct: 464 -PFLEPNDGPIMLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQQTSQLRSGV 522

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF D I  IL      R+ LMF
Sbjct: 523 EIVIATPGRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQIRPDRQTLMF 582

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    + +LA ++ KD +++ I S E   + ++     +   +D+   + + L   G 
Sbjct: 583 SATWPKVVQSLANDFLKDPIQIKIGSAELSANHNVKQIIEICEKNDKQQRLFSFLEKVGD 642

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+  V+   + +    F+   + G+ +Q ER  +LQ  +    ++ IATDVA
Sbjct: 643 EKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKSGIQMLIATDVA 702

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--- 361
           +RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  +   N  R A  L     
Sbjct: 703 SRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAFTLFTTNDMRLAGELITVLI 762

Query: 362 EANVSVVWEPAPSVEAI 378
           EAN  V     PS+E +
Sbjct: 763 EANQYV----PPSLEQM 775


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +AP RELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329]
          Length = 437

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQV  E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRQP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +    +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
          Length = 467

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 188/362 (51%), Gaps = 10/362 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   PQ+    + + GY   T +QE ++   L  +DV+  AQTG+GKT AF L +   L+
Sbjct: 6   FRFHPQITA-GIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLM 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P     A+ + PTRELA Q+   +E L   TG+      GGV    + + L+ 
Sbjct: 65  R-----GPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRR 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I V  PGRL DH+    L + HL  ++LDEAD+M D+GF  D+  IL  +P +R+ +
Sbjct: 120 GVEIAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA+   ++   + I   +   S + +    VA   +   ++ +LR+  
Sbjct: 180 LFSATMPDAIRALAREALREPQTIQIG-RSAPVSTVTHAIYPVAEHLKTALLIELLRHTD 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + ++F  T+      +  LA   ++  AL G +SQ  R  AL   R GR ++ +ATD+
Sbjct: 239 TGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDI 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARGID+  +  VI+ ++    E   HR GRTGRA R G +  ++ ++   M R  ERL 
Sbjct: 299 AARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLI 358

Query: 361 RE 362
            E
Sbjct: 359 GE 360


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 181/339 (53%), Gaps = 6/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +Q   + P L  +DVL  A TGSGKT AF L +   L+A+     P S
Sbjct: 15  AVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPILQQLIAQ-----PRS 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   L  L   + +  A  IGGVS   + R    G  +++GTPG
Sbjct: 70  TTRALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARAFHKGVEVLIGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH       +++L+ +VLDEAD ML++GF  DI  IL  +  +R+ L FSAT+   I
Sbjct: 130 RLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRRQTLFFSATMPGPI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA    ++ V +N   +      I +    VA + +   ++ +L   G +  IVF  T
Sbjct: 190 AKLATEILRNPVTLNQERKAAPAVGITHSVYPVAQNLKSKFLLELLEREGMRQVIVFTRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R ++ L++       + G  SQ +R+ AL   + G+ RV +ATD+A+RGID+  L
Sbjct: 250 KHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVLVATDIASRGIDIEAL 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
             V++ ++    E+ +HR GRT RA R G +  FV P+ 
Sbjct: 310 GHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEE 348


>gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
 gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
          Length = 1053

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 214/373 (57%), Gaps = 18/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+   G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF L  A  +L++
Sbjct: 580 NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAF-LIPAIEMLSQ 638

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     +CIGG +   E   L+
Sbjct: 639 L-RFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQT---FGICIGGANRSAEAEKLR 694

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G ++++ TPGRL DH+   +G    +L+++V+DEAD +L++GF D++  I+   P +R+
Sbjct: 695 KGVNLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQ 754

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
            ++FSAT +  +  LA+ + +   + +N+     +HS +        L D D     + +
Sbjct: 755 TMLFSATQTTKVEDLARISLKAGPLYINV-DHRAEHSTVQGLEQGYVLCDSDTRFRLLFS 813

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ H  K  IVF S+ ASV  ++++L      V+ L G+L QQ R+N      + ++  
Sbjct: 814 FLKKHQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGT 873

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRR 355
            I TDVAARG+D+P+++ VI  +   +P + +HR GRT R A  KG S+ F++P  +   
Sbjct: 874 LICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFL 933

Query: 356 AERLFREANVSVV 368
             +L +E+ V +V
Sbjct: 934 --KLLKESRVPLV 944


>gi|260772127|ref|ZP_05881044.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14]
 gi|260612994|gb|EEX38196.1| ATP-dependent RNA helicase DbpA [Vibrio metschnikovii CIP 69.14]
          Length = 389

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 171/297 (57%), Gaps = 3/297 (1%)

Query: 77  ALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL + PTRELA QV  E+  L  A   + +    GG+ +  +   L++GAHI+VGTPGR+
Sbjct: 3   ALVLCPTRELADQVATEIRTLGRAIHNIKILTLCGGMPMGPQIGSLEHGAHILVGTPGRI 62

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+    +++S L  +VLDEAD ML++GF+D ++ I+  +P  R+ L+FSAT    I  
Sbjct: 63  LDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAIIAQAPTVRQTLLFSATFPAQIKQ 122

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +A+   ++   V + S +   +   Y   L     RD A+  +L +H  ++A+VFC+T+ 
Sbjct: 123 VAERIMRNPEMVKVESTHSSTTIKQYFYKLEGAEARDKALAQLLLHHQPESAVVFCNTKK 182

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V+   + L    F V+ L G+L Q++R  AL    +    + +ATDVAARG+D+ +L+ 
Sbjct: 183 EVTHVAEQLKHKGFSVIELHGDLEQRDRDQALVQFANKSISILVATDVAARGLDVDNLDA 242

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           V + ELS +PE  +HR GRTGRAG +G+++     N   R   +    ++ +  EPA
Sbjct: 243 VFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDNEMHRVAMIDEYMDMPI--EPA 297


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR   
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKX 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   +    P 
Sbjct: 14  DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128
            A  A+ +APTRELA Q+ ++++        V AV +     G++  +++R L+ GA IV
Sbjct: 71  DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + +MFSAT
Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLAK   KD   V IA  +R    I   A +     +   + ++      +  I
Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V      L    F V A+  +L Q +R   ++  + G   + +ATDV ARGI
Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365
           D+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+  F E  V
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369


>gi|21229902|ref|NP_635819.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766780|ref|YP_241542.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188989854|ref|YP_001901864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111409|gb|AAM39743.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572112|gb|AAY47522.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167731614|emb|CAP49789.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 430

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 187/351 (53%), Gaps = 11/351 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V   AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L    L      
Sbjct: 15  VFESALARAGVRALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ----- 69

Query: 70  SPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           +P  AP  L    + PTREL  QV   L  L A     + +    GG +++ +   L+ G
Sbjct: 70  APEQAPRVLGGLILVPTRELVAQVAHTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S +  +VLDEAD +LDLGF  +++ IL   P +R+ ++
Sbjct: 130 ADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT   AI +LAK   +D +R+ +     Q   I  RA+ V    R   + ++L  HG 
Sbjct: 190 VSATFPAAIASLAKRRLRDPLRITLGGTPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHGW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R    +  + L++     + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 250 PQLLVFVTSRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            RGID+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 310 GRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360


>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 473

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 174/336 (51%), Gaps = 3/336 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  Y+  T +Q   +   L  +DV+  AQTG+GKT +F L +   LL   +R  
Sbjct: 19  ISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRLL--QNRIK 76

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P S     L ++PTREL+ Q+            +   + IGGV + R+ R L  G  ++V
Sbjct: 77  PTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQVRSLMGGVDVLV 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT+
Sbjct: 137 ATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATM 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA+   +D  RV +   +     I+ R + +  S +   +  +L+      A+V
Sbjct: 197 PKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAVLAQLLKDEKVNQALV 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K LA       A+ G  SQ  R   L   R G  R  +ATD+AARGID
Sbjct: 257 FTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGID 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L + PE  +HR GRT RAG  G ++
Sbjct: 317 VDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAI 352


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 185/352 (52%), Gaps = 11/352 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           ++ FE+    IG+     GY   T VQ+  +   L  +D++  AQTGSGKT AF L   +
Sbjct: 98  VEFFESTKATIGKC----GYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAIT 153

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ E       +   +P  L I+PTREL +Q+  E       T     V  GG +V  +
Sbjct: 154 KLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVGYQ 213

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--S 175
            + L+ G +I+VGTPGRL D +    + +  +  ++LDEAD MLD+GF  +I  I+   S
Sbjct: 214 LKQLEGGCNILVGTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSNYS 273

Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P+  KR+ LMFSAT    I  +A  +  + + + +       SDI  R + V    +  
Sbjct: 274 MPETGKRQTLMFSATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGKRE 333

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL   G    +VF  T+ +       L++  F   ++ G+  Q+ER  AL+  R G
Sbjct: 334 KLSEILSATGVDRTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFRSG 393

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            A V +AT VAARG+D+PD++ V++ +L +N E  +HR GRTGR G +G++ 
Sbjct: 394 LAPVLVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLAT 445


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 7/350 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + +   P     AL
Sbjct: 57  GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLNYNVPECQ--AL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG S+  + R LQ G H+VVGTPGR+ D 
Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P   ++ +FSAT+ P    + +
Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 231 KFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 291 DWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R  NV +
Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVI 400


>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 454

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 186/328 (56%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +  KD+L S++TGSGKT+AF L +    L ++  FS A  P A+ +APT
Sbjct: 36  TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KSKAFS-AKDPRAVILAPT 93

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  EL  + A       + +GG + + + + L+     +V TPGRL DH+  + 
Sbjct: 94  RELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 153

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201
           L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A +  +A    
Sbjct: 154 LFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 213

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
               R+ +   N +H DI  +  L    D   AI+  +L+    K  I+F +TRA   R 
Sbjct: 214 NAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLQEAEYKQIIIFTATRADTDRL 273

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ L E   + +ALSG L+Q +R+  +        ++ + TDVA+RG+D+ ++  VI+ +
Sbjct: 274 TEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFD 333

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG KG ++ ++
Sbjct: 334 MPKHTEEYVHRVGRTGRAGNKGDAISLV 361


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 183/330 (55%), Gaps = 7/330 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++   L  +           
Sbjct: 4   ELGFEKPSAIQQRAIKPVVKGRDVIAQAQSGTGKTATFSISILQCLDTQ------VRETQ 57

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+ 
Sbjct: 58  ALILSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRVF 117

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++FSAT+   I  +
Sbjct: 118 DMIRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILEM 177

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
              +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+ 
Sbjct: 178 TSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 237

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ + E  F V ++ G++ Q+ER   ++  R G +RV I TDV ARG+D+  + L
Sbjct: 238 KVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITTDVWARGLDVQQVSL 297

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 298 VINYDLPNNRELYIHRIGRSGRYGRKGVAI 327


>gi|313202794|ref|YP_004041451.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442110|gb|ADQ78466.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 453

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 180/331 (54%), Gaps = 12/331 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97
           D++  AQTG+GKT AF + +  ++       +P    + AL + PTREL  QV RE  +L
Sbjct: 41  DLVAVAQTGTGKTAAFSIPILQSV-------NPLLPQIQALVLVPTRELGQQVAREF-FL 92

Query: 98  YAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
           ++K  + V      GG  +  + + L+   H+VV TPGRL D +  K L++ HLK +VLD
Sbjct: 93  FSKYLSRVFAEAVYGGAPIEDQIQKLKRPTHVVVATPGRLIDLLERKALSLDHLKYLVLD 152

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENR 214
           EADEM+++GF+D I+ IL+S  K    ++F+AT+   +  +   Y +     ++I +E  
Sbjct: 153 EADEMMNMGFKDGIDRILESCNKNITKMLFTATMPADVKHIISKYLRPGFAEIHINAEEF 212

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            + +I++  +L    ++   +   L  H  +  I FC T+    R  K LA  +    AL
Sbjct: 213 INRNIEHSYLLYKQGEKLEYLKAFLSGHADERGIAFCRTKLDAKRLAKQLAGCIVSADAL 272

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G L+Q+ R   ++  + G   + +ATD+AARGID+ DL+ ++H  L    E   HRSGR
Sbjct: 273 HGNLNQEMRDKVMRAFKRGSINLLVATDIAARGIDVKDLDYIVHYSLPEKTEQYTHRSGR 332

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           T RAG+ G+SV +  ++       L  E N+
Sbjct: 333 TARAGKSGISVCLATKDQLEDIHTLQSELNI 363


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 192/368 (52%), Gaps = 19/368 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G AL+E      Y   T VQ   +   L  +D++  AQTGSGKT AF   + + ++   
Sbjct: 148 LGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAGIMRNT 207

Query: 67  ----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R    + PLAL ++PTREL+ Q+  E +    +TG+ V VC GG  VH + R+++
Sbjct: 208 PPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPVHNQLREME 267

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 268 RGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMDMPPAG 327

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++
Sbjct: 328 ERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDSDKRSMLMDL 387

Query: 239 LRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +    A          +VF  T+         L    F    + G+ SQQER +AL+  R
Sbjct: 388 IHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFR 447

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G++     + 
Sbjct: 448 TGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVATAFFNEK 507

Query: 352 MQRRAERL 359
            Q  A  L
Sbjct: 508 DQSLARSL 515


>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
          Length = 490

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 198/368 (53%), Gaps = 13/368 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q   +   L  KD++  A+TGSGKT AF L +   LL    R+       A+ + PT
Sbjct: 72  SKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLDNPQRY------FAVVLTPT 125

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + E L    GV   V +GG+ +  +   L    HI++ TPGRL DH+   K
Sbjct: 126 RELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHIIIATPGRLVDHLENTK 185

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G  +  LK +V+DEAD +L++ F  ++  IL   P++RR  +FSAT++  +  L +   +
Sbjct: 186 GFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFSATMTKKVKKLERASLR 245

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D V+V ++S+ +    +    + +    +D  +V+IL      + ++FCST  +  R   
Sbjct: 246 DPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNSFMIFCSTCNNTVRTAL 305

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L       V L G+++Q +R  AL   +    ++ I+TDVA+RG+D+P +++V++ ++ 
Sbjct: 306 MLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDVASRGLDIPHVDVVLNLDIP 365

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAIR 379
            + ++ +HR GRT RAGR G ++  + Q    + +R E L  +       E    V A++
Sbjct: 366 MHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLSKKLPEYKCEE-DEVMALQ 424

Query: 380 ER--DAQR 385
           ER  +AQR
Sbjct: 425 ERVAEAQR 432


>gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
 gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
          Length = 451

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 187/342 (54%), Gaps = 7/342 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   PQV+   ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKEFNLHPQVMA-GVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+ +R        AL IAPTRELA Q+      L  +T +      GGV+V+ + + 
Sbjct: 62  RL-AQGER----GRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DH+    +++SHL+ +VLDEAD+M D+GF  D+  IL   P KR
Sbjct: 117 LKAGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+   +D V V + +     + + +    V    +   ++ +LR
Sbjct: 177 QTLLFSATMPIDIRVLAQEILRDPVTVQVGTVAPAVT-VTHALYPVEQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + + +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           TD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 15/341 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------AENDRFS 70
           Y   T VQ+  +    +++D++  AQTGSGKT +F + + S +           +N+R +
Sbjct: 309 YTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLDGQPEFIREQNNRNN 368

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
               P+AL +APTRELA Q+  E      ++ V   V  GG  +  + RDL + G H++V
Sbjct: 369 RKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGAQMRDLPERGCHLLV 428

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMF 185
            TPGRL D +    + + H++ VVLDEAD MLD+GF   I  I+  D+ P    RR LMF
Sbjct: 429 ATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEKDTMPPTGDRRTLMF 488

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G  
Sbjct: 489 SATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDKRSFLLDLLNASGPD 548

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+         L    +    + G+ SQ+ER  AL+  R G+  V +AT VA
Sbjct: 549 SLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNFRSGKTPVLVATAVA 608

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 609 ARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 649


>gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
          Length = 453

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|294814858|ref|ZP_06773501.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326443235|ref|ZP_08217969.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327457|gb|EFG09100.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 819

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 172/320 (53%), Gaps = 10/320 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL L   +    D    R  P   + AP AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRARPDQLSEAPQALVVVPTRELCTQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L        V V    GG +   +   L+ G  ++VGTPGRL D    K L++S ++A
Sbjct: 71  NDLLTAGKVRNVRVLAIYGGRAYEPQVEALRKGVDVIVGTPGRLLDLAGQKKLDLSQVRA 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+  LA+ Y      +   +
Sbjct: 131 LVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRATA 190

Query: 212 ---ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
              E    ++I  R       D+   +  IL+  G   A++FC T+ + +     LA   
Sbjct: 191 PDDEGATVANITQRVYRAHSMDKPEMVSRILQAEGRGLAMIFCRTKRTAADIADQLARRG 250

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ +   + +  
Sbjct: 251 FASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTY 310

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           LHR GRTGRAG  G +V ++
Sbjct: 311 LHRVGRTGRAGASGTAVTLV 330


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 185/356 (51%), Gaps = 21/356 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   GY   T +Q   +   L  +D++ SAQTG+GKT +F L     LL  
Sbjct: 7   NLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLTP 66

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               SP     P  L + PTRELA+QV   +        V     +GG+    +   L  
Sbjct: 67  ----SPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF DD++ I D++P +R+ L
Sbjct: 123 PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAERQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAI 235
           +F+AT+  A+  LA+   KD VRV        N+  E R H   D R        ++  +
Sbjct: 183 LFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMR-------HKNRLL 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++       AI+F +T+    +    L        AL G++SQ  R+  +  MR G+ 
Sbjct: 236 QHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKV 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           R+ +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N
Sbjct: 296 RLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMN 351


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  +  R    + +  NV V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQKFYNVVV--EELPS 407


>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 543

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EA+   GY   + +Q   +   L+  ++L +AQTG+GKT AF L L S +     
Sbjct: 133 PEVL-EAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRI----- 186

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
            F+     + L + PTRELA+QV   ++    K   V V    GG  +  + R L+  A 
Sbjct: 187 NFNGRETSM-LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKAS 245

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DHI+   +++  +KA+VLDEADEMLD+GF +D+E IL   P   +  +FS
Sbjct: 246 IVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFS 305

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  ++  +   +  +     I  +     +I  R +LV    +  A+  +L       
Sbjct: 306 ATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDG 365

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ + +   + L    F V  L+G+L+Q  R   +  ++ G+  + +ATDVAAR
Sbjct: 366 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 425

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           GID+  + LV++ ++  + E+ +HR GRTGRAGR G ++ F+ P+
Sbjct: 426 GIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPR 470


>gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
 gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
          Length = 488

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 8/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L       +
Sbjct: 110 VMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQLQQVPPPKE 169

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126
           R+     P AL IAPTREL VQ+ ++   L   +G+ V   +GG+   ++ + L+     
Sbjct: 170 RY--MGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKSLEARHCD 227

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+
Sbjct: 228 ILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLL 287

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  
Sbjct: 288 FSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKW 347

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA
Sbjct: 348 ERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRISVLVATDVA 407

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 408 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSI 448


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 89  ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
 gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
          Length = 435

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 186/341 (54%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           PQV+ E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  + 
Sbjct: 18  PQVV-EGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHA 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ G  
Sbjct: 77  HEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184
           +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+     +P++R  ++
Sbjct: 137 VLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++     
Sbjct: 197 FSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 DRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L + STL     R     
Sbjct: 16  AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L ++PTRELA Q+ +    +  KTG  V    GG     +  +++ G  +++ TPG
Sbjct: 73  APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P  R+ L+FSATI  +I
Sbjct: 133 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +   D   V IA        ++   + +A   +   +  +L   G+   IVF  T
Sbjct: 193 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L +  ++  ++  + SQ +R  AL   R GR  + +ATDV ARGID+PD+
Sbjct: 253 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R
Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 353


>gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
 gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
          Length = 436

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L
Sbjct: 74  --TPAAEGRTDTQPRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLAKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q+G  I++GT GR+ D  + +  ++++++AVVLDEAD M DLGF  DI F+      PK 
Sbjct: 132 QSGVDILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 422

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 192/379 (50%), Gaps = 10/379 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LS+ G VN T +Q+  +   L+ +DVL  AQTG+GKT AFGL L    + +  +    S
Sbjct: 20  TLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQRFIDQPWQREENS 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   L+     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D   V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPTEVQVTPSNSTAETVQQMVYPVDKKRKRELLAYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  +   + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSVEAIRERDAQR 385
             +EP+P V   RE ++ R
Sbjct: 380 KGFEPSPEV---REENSPR 395


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   +    P 
Sbjct: 14  DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128
            A  A+ +APTRELA Q+ ++++        V AV +     G++  +++R L+ GA IV
Sbjct: 71  DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + +MFSAT
Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLAK   KD   V IA  +R    I   A +     +   + ++      +  I
Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V      L    F V A+  +L Q +R   ++  + G   + +ATDV ARGI
Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365
           D+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+  F E  V
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 7/350 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + +   P     AL
Sbjct: 57  GFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATF----CSGILQQLNYNVPECQ--AL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG S+  + R LQ G H+VVGTPGR+ D 
Sbjct: 111 VLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P   ++ +FSAT+ P    + +
Sbjct: 171 LRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTNLQVGVFSATMPPEALEITR 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   D + + + ++        +++F +TR  V
Sbjct: 231 KFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 291 DWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R  NV +
Sbjct: 351 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVI 400


>gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2]
          Length = 460

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 11/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL  +G   L+ +Q   L   L   DV+  AQTGSGKT+ F       ++   ++  
Sbjct: 15  ITKALDAQGIFTLSPIQAQSLPHALAGSDVIGQAQTGSGKTLCF-------VIPALEKID 67

Query: 71  PA-SAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127
           P   A   L + PTRELA QV  +      + G   V+ +C GG  +  + + L++GAH+
Sbjct: 68  PTLFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKVMTIC-GGQPMGPQIQSLKHGAHV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ +H+  + L +  ++  VLDEAD MLD+GF DD++ I     K  + L+FSA
Sbjct: 127 VVGTPGRVMEHVEKRRLMLKDVRLRVLDEADRMLDMGFEDDLKVIFSPMKKGVQTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  I  +A  Y  + V   + S+      I      V    R   +  IL     K A
Sbjct: 187 TYTEEIERIADQYLTEPVICKVESDESNKPSITQIGYNVLPHTRIQTLKAILTDSQPKTA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC+ R  V+     L E  F    L GE+ Q ER+  L        +V +ATDVAARG
Sbjct: 247 IVFCNRRVQVTEVVASLLEDGFSAAGLQGEMEQYERTAVLNQFASDALQVLVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ D+  VI+  +S  PE  +HR GRT RAG +G ++ ++
Sbjct: 307 LDIDDIPCVINYTVSEEPETHIHRIGRTARAGAEGTAITLV 347


>gi|156105935|gb|ABU49329.1| vasa [Ilyanassa obsoleta]
          Length = 411

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/312 (35%), Positives = 175/312 (56%), Gaps = 7/312 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + ++ E    SP S    P A+ +APTRELA Q+ +E 
Sbjct: 3   RDLMGCAQTGSGKTAAFLLPVLTEMMKEGLTCSPMSVVKEPQAIVVAPTRELADQIYKEA 62

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                 T +   V  GGV+V+ + R +  GA++VVGTPGRL D I    + +  +K ++L
Sbjct: 63  RKFSTGTDLRPVVVYGGVAVNHQLRQVDLGANLVVGTPGRLLDFIERGKIGLGKVKYLIL 122

Query: 155 DEADEMLDLGFRDDIEFILDS---SPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           DEAD MLD+GF   I  ++D     PK +R+ L+FSAT  P I  LA ++ KD + + + 
Sbjct: 123 DEADRMLDMGFEPSIRKLVDGLGMPPKSQRQTLLFSATFKPDIQQLAADFMKDYLFITVG 182

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                 +D++   + V    +   + +IL   G    +VF   + +       L++  + 
Sbjct: 183 IVGGACTDVEQTFLEVDRVQKREYLCDILNTSGTNRVLVFVGQKRNADFLASYLSQSGYP 242

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
              + G+  Q+ER  AL+  + G++ V IAT+VAARG+D+PD+  V++ +L  + +  +H
Sbjct: 243 TTTIHGDRLQREREEALRDFKSGKSPVLIATNVAARGLDIPDVTHVVNYDLPMDIDEYVH 302

Query: 331 RSGRTGRAGRKG 342
           R GRTGR G  G
Sbjct: 303 RIGRTGRCGNLG 314


>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 443

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +         + +GG + + + + L+     +V TPGR
Sbjct: 74  PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+++   N QH DI  +  L    D   AI++ ++     +  ++F 
Sbjct: 194 VNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+P
Sbjct: 254 ATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 189/345 (54%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EA+   GY   + +Q   +   L+  ++L +AQTG+GKT AF L L S +     
Sbjct: 70  PEVL-EAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLSRI----- 123

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
            F+     + L + PTRELA+QV   ++    K   V V    GG  +  + R L+  A 
Sbjct: 124 NFNGRETSM-LVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLRALKRKAS 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DHI+   +++  +KA+VLDEADEMLD+GF +D+E IL   P   +  +FS
Sbjct: 183 IVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPADAQRALFS 242

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  ++  +   +  +     I  +     +I  R +LV    +  A+  +L       
Sbjct: 243 ATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDG 302

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ + +   + L    F V  L+G+L+Q  R   +  ++ G+  + +ATDVAAR
Sbjct: 303 VLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAAR 362

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           GID+  + LV++ ++  + E+ +HR GRTGRAGR G ++ F+ P+
Sbjct: 363 GIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPR 407


>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
 gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
          Length = 447

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +         + +GG + + + + L+     +V TPGR
Sbjct: 78  PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+++   N QH DI  +  L    D   AI++ ++     +  ++F 
Sbjct: 198 VNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+P
Sbjct: 258 ATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 318 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 354


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 191/358 (53%), Gaps = 18/358 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ ++I   +    Y+  T VQ+  +      +D++  AQTGSGKT AF + + S +   
Sbjct: 144 DLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILSLIYEN 203

Query: 66  NDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             +  P               PLAL +APTRELA Q+  E +    ++ V   V  GG  
Sbjct: 204 GPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVVYGGAD 263

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + RDL+ G H++VGTPGRL D +    + + ++K ++LDEAD MLD+GF   I  I+
Sbjct: 264 IGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQIRRIV 323

Query: 174 --DSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             D+ P   KRR +MFSAT    I  LA+++  + + + +        +I  + V V   
Sbjct: 324 EQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQKVVWVDEQ 383

Query: 230 DRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           D+ + ++++L   G +++  + F  T+         L    + V ++ G+ SQ+ER +AL
Sbjct: 384 DKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDAL 443

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              R G   + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++ 
Sbjct: 444 MTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNLGLAT 501


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 37/390 (9%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G+AL++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++   
Sbjct: 80  LGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM--- 136

Query: 67  DRFSPA----------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            R  PA          + PLAL ++PTREL++Q+  E      +TGV V V  GG  +++
Sbjct: 137 -RGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQ 195

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-- 174
           + RDL+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   +  I++  
Sbjct: 196 QLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQM 255

Query: 175 --SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               P  R+ ++FSAT    I  +A ++ ++ + + +         I  R   V  +D+ 
Sbjct: 256 DMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKR 315

Query: 233 NAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + ++++L  H  +++         +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 316 SHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 373

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 374 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 433

Query: 344 SVFVIPQN---MQRRAERLFREANVSV-VW 369
           +     +N   M R    L +E+N  V  W
Sbjct: 434 ATAFFNENNSSMARSLAELMQESNQEVPAW 463


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 11/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   +    P 
Sbjct: 14  DGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPT 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIV 128
            A  A+ +APTRELA Q+ ++++        V AV +     G++  +++R L+ GA IV
Sbjct: 71  DAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + +MFSAT
Sbjct: 131 IATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLAK   KD   V IA  +R    I   A +     +   + ++      +  I
Sbjct: 191 MPPKIRTLAKTILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V      L    F V A+  +L Q +R   ++  + G   + +ATDV ARGI
Sbjct: 250 IFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365
           D+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+  F E  V
Sbjct: 310 DINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 369


>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
 gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 424

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 180/341 (52%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL   G     ++QE  L   L   D +  A+TG GKT  FG+ L   +    D   
Sbjct: 19  ITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVAE 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL I PTRELAVQVG +L+       + +    GG     +   L+ G  +VVG
Sbjct: 79  TDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVVG 138

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D H RG  L++  +  +VLDEADEMLDLGF  DIE IL +   + + ++FSAT+
Sbjct: 139 TPGRLLDLHKRG-ALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNA 247
             AI TLA+++    V +   + +   +    + V+      D++     IL+       
Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKILQAKDRGKT 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + +ATDVAARG
Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++
Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLV 358


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +  A   +  N R     +P  L
Sbjct: 51  GFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIG-ALQCVEVNVR-----SPQVL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ +    L     + V  C+GG ++  + + L+ G HIV GTPGR+ D 
Sbjct: 105 ILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   H+K ++LDEADEML LGF+  I  +    P   ++++ SAT++  + ++ +
Sbjct: 165 ITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMTE 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D +   + +I        A++FC+T+  V
Sbjct: 225 KFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKV 284

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ + +  F V ++ G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LVI
Sbjct: 285 DQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVI 344

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  + EN +HR GR+GR GRKG+++
Sbjct: 345 NYDLPIDRENYIHRIGRSGRFGRKGVAI 372


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 4/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L    A   +F 
Sbjct: 15  AVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFG 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  ++V 
Sbjct: 75  -GKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   P+ ++ L+FSAT S
Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +  K+   + +   N     I      V    +   +++I++ H     +VF
Sbjct: 194 DDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L ++    +AL G  SQ  R+ AL+  + G+ R  +ATD+AARGID+
Sbjct: 254 TRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  V++ E+ + PE+ +HR GRTGRAGR+G +V ++
Sbjct: 314 DDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLV 351


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 530

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 531 ERNINIT 537


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 183/338 (54%), Gaps = 4/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L    A   +F 
Sbjct: 15  AVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHRLAEGQAPRSQFG 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  ++V 
Sbjct: 75  -GKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIERIKRGVDVLVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   P+ ++ L+FSAT S
Sbjct: 134 TPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQSKQSLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +  K+   + +   N     I      V    +   +++I++ H     +VF
Sbjct: 194 DDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHIIQEHDWSQVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L ++    +AL G  SQ  R+ AL+  + G+ R  +ATD+AARGID+
Sbjct: 254 TRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRALVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL  V++ E+ + PE+ +HR GRTGRAGR+G +V ++
Sbjct: 314 DDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLV 351


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 89  ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 446

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 185/330 (56%), Gaps = 9/330 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIA 81
           T +Q+  +   +  KD+L S++TGSGKT+AF L     +     R  P +   P  L + 
Sbjct: 25  TEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY----RSKPFTRRDPRVLILT 80

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA QV  +L  L A T     + +GG + + + + L+N    VV TPGRL DH+  
Sbjct: 81  PTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPMFVVATPGRLADHLEH 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKN 199
           +  ++  L+ ++LDEAD +LDLGF   +  I +++  +RR  LMFSAT+  + +  +A  
Sbjct: 141 RSTHLDGLEMLILDEADRILDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASE 200

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
              +  R++I     +H DI  R +L    D   A+++ IL     K  I+F +TRA   
Sbjct: 201 MLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQDYKQVIIFTATRADTD 260

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R T  L E   + VALSG L+Q +R++ +        ++ + TD+A+RG+D+ ++ LVI+
Sbjct: 261 RLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDIASRGLDIDNVSLVIN 320

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++  + E  +HR GRTGRAG KG +V ++
Sbjct: 321 FDMPKHAEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
 gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L    +      
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQEPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     + V V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 212 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 270

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 271 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 330

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 331 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 390

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 391 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 450

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 451 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 510

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 511 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 558

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 559 ERNINIT 565


>gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 444

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/328 (35%), Positives = 185/328 (56%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +  KD+L S++TGSGKT+AF L +    L ++  FS A  P A+ +APT
Sbjct: 25  TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPILHKSL-KSKAFS-AKDPRAVILAPT 82

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  EL  + A       + +GG + + + + L+     +V TPGRL DH+  + 
Sbjct: 83  RELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 142

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201
           L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A +  +A    
Sbjct: 143 LFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 202

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
               R+ +   N +H DI  +  L    D   AI+  ++     K  I+F +TRA   R 
Sbjct: 203 NAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVIEEANYKQLIIFTATRADTDRL 262

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ L E   + +ALSG L+Q +R+  +        ++ + TDVA+RG+D+ ++  VI+ +
Sbjct: 263 TEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFD 322

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG KG +V ++
Sbjct: 323 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 1012

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 34/378 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++P  + EA+ E GY   + +Q   +   +  +D++  A+TGSGKT AFG+ + + +L+ 
Sbjct: 582 HLPSSVMEAIRELGYEKPSPIQRQAIPIGMERRDIIGIAETGSGKTAAFGIPMIAYILSL 641

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                DR +    PLAL +APTRELA+Q+  E +      G+     +GG  +  +   L
Sbjct: 642 EAGMRDRVAD-QGPLALIMAPTRELAIQIEEECKKFCKFAGLNTVCVVGGQDIEAQAFTL 700

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------ 175
           + G  I++GTPGRL D +    L ++    VVLDEAD M+D+GF D +  +L++      
Sbjct: 701 RKGVEIIIGTPGRLNDCVEKHYLVLNQCNYVVLDEADRMIDMGFEDQVLAVLEAMGGTLK 760

Query: 176 ---------SPKK-----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR- 214
                      KK           R   MFSAT+  A+  +AK Y +    V I  E+  
Sbjct: 761 ADDAELAYKQEKKAKQARSAADLVRVTAMFSATMPAAVEKMAKKYLRHPAIVQIGDEDTG 820

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVA 273
           ++  I+ R + +  + +   +  +LR H  ++  +VF +T+ S     + L +  F    
Sbjct: 821 KNRRIEQRVLWMTEAQKKTKVTELLRGHDKEDRVLVFINTKKSADMLGRQLEQAGFPTGV 880

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q +R   L+  RDG   V +ATDVA+RG+D+PD++ VI+ EL +  E   HR G
Sbjct: 881 LHGGKTQDQREENLESFRDGDYTVLVATDVASRGLDIPDVK-VINYELPNKIETYCHRIG 939

Query: 334 RTGRAGRKGMSVFVIPQN 351
           RTGRAG+ G++   + ++
Sbjct: 940 RTGRAGKDGVATSFLTEH 957


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 177/326 (54%), Gaps = 8/326 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           DV+  AQ+G+GKT  F ++L   L    D   P      L +APTRELA Q+ + +  L 
Sbjct: 71  DVIGQAQSGTGKTATFTISLLQRLNISPDVIQPQ----GLVLAPTRELAQQIHKVIMSLG 126

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
               V V  C+GG  V  +   L+ G HI+VGTPGR+   I+   LN++ +K +V+DEAD
Sbjct: 127 EYMKVKVHACVGGTKVQHDIAILEEGVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEAD 186

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           EML  GF+D I  I  + P+  ++ +FSAT+   +  +   + +D +R+ +  E      
Sbjct: 187 EMLSRGFKDQIYAIFKNLPQDMQVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEG 246

Query: 219 IDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I    + V   D +   + ++ +       ++FC++R  V +  + L +  F V  + GE
Sbjct: 247 IKQFYISVDREDYKFETLCDLYKVLTISQCVIFCNSRKKVEQLAEQLNKKDFTVSCMHGE 306

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           +  ++R   +   R   +RV I TD+ ARGID+  + LVI+ +L  + EN LHR GR+GR
Sbjct: 307 MDPKDRELIMHEFRTSASRVLITTDLLARGIDVHHVSLVINFDLPRHKENYLHRIGRSGR 366

Query: 338 AGRKGMSV-FVIPQNMQ--RRAERLF 360
            GRKG+++ FV   +++  R  E+ +
Sbjct: 367 YGRKGVAINFVTKDDVRSLREIEKFY 392


>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
 gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
          Length = 422

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 191/350 (54%), Gaps = 16/350 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71
           +++ G+   T +Q  +L   L   D +  AQTG+GKT AF + + + LL    +  RF  
Sbjct: 38  IADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVINDLLKHPIDVQRF-- 95

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVG 130
           A  P AL +APTRELA+Q+ ++   L   T + V   +GG++ +R++  LQN    I+V 
Sbjct: 96  AGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQERLQNKLIDILVA 155

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           TPGRL D  + + L +  ++ +VLDEAD MLD+GF  D++ I+  +PK   R+  +FSAT
Sbjct: 156 TPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQTQLFSAT 215

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  +  L++ + +DA  V I         ++ +  +    D+   + N++        I
Sbjct: 216 FNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITGMNMDKVI 275

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + R    R    L +   +V  +SG++ Q +RS  L+  R G  +V IATDVA RGI
Sbjct: 276 VFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIATDVAGRGI 335

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
            +  +  V++  L  +PE+ +HR GRTGRAG  GMS+        F++P+
Sbjct: 336 HIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPE 385


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 530

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 531 ERNINIT 537


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 199/380 (52%), Gaps = 29/380 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A+
Sbjct: 229 NMGEIIMGNIQLTRYTRPTPVQKHAIPIIIDKRDLMACAQTGSGKTAAFLLPILSQIYAD 288

Query: 66  -----------NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                      N R+      PL+L +APTRELAVQ+  E      ++ V   V  GG  
Sbjct: 289 GPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGAD 348

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           + ++ RDL+ G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+
Sbjct: 349 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIV 408

Query: 174 --DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             D+ P K  R+ +MFSAT    I  LA+++ ++ + + +        +I  + V V   
Sbjct: 409 EQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEM 468

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL 
Sbjct: 469 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALH 528

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+     
Sbjct: 529 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL----- 583

Query: 349 PQNMQRRAERLFREANVSVV 368
                  A   F E N+++ 
Sbjct: 584 -------ATSFFNEKNINIT 596


>gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
 gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
          Length = 451

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L    +      
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQEPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     + V V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALE 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|111024197|ref|YP_707169.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823727|gb|ABG99011.1| possible ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 632

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 202/393 (51%), Gaps = 24/393 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +P  + +AL+ R  + + S  +A+  PD L   +VL  AQTGSGKT+AFGL + + L  
Sbjct: 32  GLPAPLVQALA-RNSITVPSPIQALAVPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSR 90

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G
Sbjct: 91  HEDRPAPKR-PRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFSKQVDQLRRG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +    + L+
Sbjct: 150 VDILVATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQRLL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   + +L + +  D V+ +          +++  +LV    +DN +  I    GA
Sbjct: 210 FSATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDNVLAEI----GA 265

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           ++   I+F  T+      T  L        AL G  +Q +R+  L+  ++GR  V +ATD
Sbjct: 266 RDGRTIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATD 325

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R   RL   
Sbjct: 326 VAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGM 385

Query: 363 ANV---------------SVVWEPAPSVEAIRE 380
           A V               S+    APS E +R+
Sbjct: 386 AGVDATAVPVTPGSEKLASITGAKAPSGEPVRD 418


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV   +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVTAQSQSGTGKTATFNISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHTCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IRG+ L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++         ++FC+T+  V
Sbjct: 231 KFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQVVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+E  + ++  R G ++V I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRAGTSQVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +L++N E  +HR GR+GR GRKG+++
Sbjct: 351 TYDLTNNRELYIHRIGRSGRYGRKGVAI 378


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L + STL     R     
Sbjct: 16  AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L ++PTRELA Q+ +    +  KTG  V    GG     +  +++ G  +++ TPG
Sbjct: 73  APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P  R+ L+FSATI  +I
Sbjct: 133 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +   D   V IA        ++   + +A   +   +  +L   G+   IVF  T
Sbjct: 193 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L +  ++  ++  + SQ +R  AL   R GR  + +ATDV ARGID+PD+
Sbjct: 253 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R
Sbjct: 313 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 353


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 172/335 (51%), Gaps = 1/335 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPAS 73
           +SE G+   T VQ+  +   L+  DVL  AQTG+GKT AFGL L   L+ + + R + + 
Sbjct: 16  VSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLIQRLIESPSPRIANSK 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA QV   L      T +   V  GG SV  +  +L  GA I+V TPG
Sbjct: 76  VIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQTENLIGGADILVATPG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    + ++  + +VLDEAD MLD+GF  DI+ IL     K + L FSAT    I
Sbjct: 136 RLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMASKHQTLFFSATFGDKI 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A     +   V +   N     ++     V    +   +  ++     K  +VF  T
Sbjct: 196 KEIAYRILDNPKVVQVTPSNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWKQVLVFTKT 255

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K L     +  +++G+ SQ  R  AL+  + G+ R  IATDVAARG+D+  L
Sbjct: 256 KQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKIRALIATDVAARGLDIEQL 315

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           E VI+ EL    E+ +HR GRTGRAG  G +V ++
Sbjct: 316 ECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLM 350


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 478

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 18/383 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 13  NLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIERLAGG 72

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  PA+A     P AL +APTRELAVQ+  ELE       V  A+ IGGV +  +   
Sbjct: 73  APKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMGAQSAA 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   PK R
Sbjct: 133 LRD-HEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++ +L 
Sbjct: 192 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLLALLE 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ RV +A
Sbjct: 252 ED-DLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAE 357
           TD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G  S F  P+ +   R  E
Sbjct: 311 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRDIE 370

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
           RL R         P P  E  RE
Sbjct: 371 RLTR--------APIPRAEVPRE 385


>gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter
           carbinolicus DSM 2380]
          Length = 432

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 184/345 (53%), Gaps = 7/345 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   PQV  + +   GYV  T +Q   +   +  +DV+  AQTG+GKT AF L +   L+
Sbjct: 6   FNFHPQV-AKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQRLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P     AL +APTRELA Q+ + +  L   TG+      GGV++  +   L+ 
Sbjct: 65  D-----GPRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKR 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV  PGRL DHI  K +++S+++ +VLDEAD+M D+GF   +  IL   P +R+ L
Sbjct: 120 GVDIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTL 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  L+       + V + +     + + +    VA   +   ++ +L    
Sbjct: 180 LFSATMPAAIRRLSGEVLTSPMTVQVGNTTPAET-VSHALYPVAQHQKTAMLLELLSAVD 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +++ +VF  T+    R    L +  +Q  +L G LSQ  R  AL   RDG+  + +ATD+
Sbjct: 239 SRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATDI 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+  +  VI+ ++    E  +HR GRTGRA RKG +  ++
Sbjct: 299 AARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLV 343


>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
 gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
          Length = 434

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 195/366 (53%), Gaps = 14/366 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ+I +A    G+     +Q   +   L+ +D++  AQTGSGKT AF + +  
Sbjct: 12  FESLGVHPQII-DACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVLQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +            L IAPTRELA Q+  +   L A  GV   V +GG+    +   
Sbjct: 71  KLLEQ------PQGIFCLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQ 124

Query: 121 LQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++G+PGR+  H+   KG N+  +K  ++DEAD +    F +++  IL   PK+
Sbjct: 125 LAKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKE 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + V++ +A++ +    +  + + +    ++  +V IL
Sbjct: 185 RNTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKYKECYLVYIL 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F ST AS ++ T +L       + ++G++ Q +R  +L   + G   + +
Sbjct: 245 NELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRA 356
           ATDVAARG+D+P ++LVI+ ++ +N +  +HR GRT RAG  G ++ ++ Q    M +R 
Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364

Query: 357 ERLFRE 362
           E + ++
Sbjct: 365 EFVLKK 370


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E I +++ + +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   +   +L
Sbjct: 205 LEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIVMKML 264

Query: 64  AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            +    +P  +         P+AL ++PTRELA+Q   E       TG+   V  GG  V
Sbjct: 265 NDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVLYGGSEV 324

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +  DL  G+ I+V TPGRL D I RGK +N+  +K ++LDEAD MLD+GF   I  I+
Sbjct: 325 RSQIMDLDRGSDIIVATPGRLRDLIDRGK-VNLKLIKFLILDEADRMLDMGFAPQIREIV 383

Query: 174 DSSP-----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           + S        R+ +MFSAT    I  LAK++  + + + +         I  R V    
Sbjct: 384 EDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRVVYAEE 443

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER +AL+
Sbjct: 444 DHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 503

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G++   +
Sbjct: 504 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 563


>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
          Length = 543

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+  + +ATDVA
Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVATDVA 423

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 191/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D FS      AL
Sbjct: 58  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTF----CSGVLQQLD-FSLIQCQ-AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ   H+VVGTPGR+ D 
Sbjct: 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQASVHVVVGTPGRVFDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 172 LKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 232 KFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  E  PS
Sbjct: 352 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVV--EELPS 406


>gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I]
 gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS]
          Length = 462

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L  + +R     AP AL
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ D
Sbjct: 77  VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L+
Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   + + +++   S I+     +    R +A+  +L +    + + FC+T+   
Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLAFCNTKIRS 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  VI
Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373
           + +++ + E  +HR GR+GR  +KG+++    P+ M        R AN+   ++ AP   
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367

Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401
             + ++R + + R L+ P+    IQG +K
Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 89  ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 37/390 (9%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G+AL++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++   
Sbjct: 162 LGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIM--- 218

Query: 67  DRFSPA----------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            R  PA          + PLAL ++PTREL++Q+  E      +TGV V V  GG  +++
Sbjct: 219 -RGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQ 277

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-- 174
           + RDL+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   +  I++  
Sbjct: 278 QLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQM 337

Query: 175 --SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               P  R+ ++FSAT    I  +A ++ ++ + + +         I  R   V  +D+ 
Sbjct: 338 DMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKR 397

Query: 233 NAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + ++++L  H  +++         +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 398 SHLMDLL--HAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQER 455

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 456 EYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 515

Query: 344 SVFVIPQN---MQRRAERLFREANVSV-VW 369
           +     +N   M R    L +E+N  V  W
Sbjct: 516 ATAFFNENNSSMARSLAELMQESNQEVPAW 545


>gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 521

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 197/379 (51%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L    
Sbjct: 85  MPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 141

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA 
Sbjct: 142 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGAE 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD  +P  +RML F
Sbjct: 202 VVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+      I    G  
Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L+  + G   V +AT+VAA
Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P +  +R  +A+
Sbjct: 439 T------PQIAQVRSGEAE 451


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 198/360 (55%), Gaps = 23/360 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAP 75
           YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++    A+  R S  + P
Sbjct: 237 YVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMKGQYAQRPRGSRTAYP 296

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LAL ++PTREL+ Q+  E +    +TGV V V  GG  ++++ RDL+ G  I+V TPGRL
Sbjct: 297 LALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRL 356

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISP 191
            D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+  R+ ++FSAT   
Sbjct: 357 VDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGVRQTMLFSATFPK 416

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVF 250
            I  LA ++  + + + +   +++   +D     +  + R+N        HG +   +VF
Sbjct: 417 EIQRLASDFLANYIFLAVGRSDKRSHLMD-----LLHAQRENGT------HGKQALTLVF 465

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+         L  + F   ++ G+ SQQER +AL++ + G   + +ATDVAARG+D+
Sbjct: 466 VETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDI 525

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367
           P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N   + R    L +E+N  V
Sbjct: 526 PHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARGLAELMQESNQEV 585


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 179/325 (55%), Gaps = 11/325 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P  + +DV+  AQ+G+GKT  F +++  ++              AL ++PT
Sbjct: 47  SAIQQRAILPITQGRDVIAQAQSGTGKTATFSISILQSIDV------TVRETQALVLSPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+   +  L     V    CIGG S+  + R L+ G H+V GTPGR+ D IR + 
Sbjct: 101 RELATQIQSVVLALGDYMNVQCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRS 160

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L   ++K +VLDEADE+L+ GF+D I  +    P   ++++ SAT+   +  +   +  D
Sbjct: 161 LRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPPATQVILLSATLPYDVLEMTTKFMTD 220

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRF 260
            +R+ +  +      I  +   VA+   D   + + ++        A++FC+TR  V   
Sbjct: 221 PIRILVKRDELTLEGI--KQFFVAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWL 278

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ +    F V ++ GE+ Q+ER   +   R G +RV I TDV ARGID+  + LVI+ +
Sbjct: 279 TEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRVLITTDVWARGIDVQQVSLVINYD 338

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L +N EN +HR GR+GR GRKG+++
Sbjct: 339 LPANRENYIHRIGRSGRFGRKGVAI 363


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 198/367 (53%), Gaps = 9/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G++  T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 110 IQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP- 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A+  +    R S    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 169 ATVHINNQPRLSRGDGPIVLVLAPTRELAQQI-QSVARDFGSSSCIRNTCIFGGSPKGPQ 227

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 228 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 287

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S N   + +I     +    +++N + 
Sbjct: 288 PDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKENKLA 347

Query: 237 NILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +LR  G +     I+F  T+  V   TK +  + +  +A+ G+ SQ ER   L   R+G
Sbjct: 348 VLLREIGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNG 407

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ D++ V++ +  ++ E+ +HR GRTGR    G +      N  
Sbjct: 408 KTAILVATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 467

Query: 354 RRAERLF 360
           R+A+ L 
Sbjct: 468 RQAKELI 474


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 257

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 258 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 437

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 438 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 545

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 546 ERNINIT 552


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 190/348 (54%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   + + + + GYV LT +Q+  +   +  +D++  AQTGSGKT AF L + + L+  
Sbjct: 292 NLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVK 351

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E+  F     P A+ +APTREL  Q+  +       T V   V  GG  +    + + 
Sbjct: 352 GVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHSLKQIS 411

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK- 179
            G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GFR+DIE +L SS  P K 
Sbjct: 412 EGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSGMPSKE 471

Query: 180 -RRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LMFSAT   +I +LA+   K D + V +       SD++   + V    + + ++ 
Sbjct: 472 ERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKKDKLME 531

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G++  +VF  T+         L +      ++ G+  Q+ER  AL+  R G+  V
Sbjct: 532 ILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPV 591

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ ++  VI+ ++  + +  +HR GRTGR G  G ++
Sbjct: 592 IVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAI 639


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/347 (36%), Positives = 190/347 (54%), Gaps = 11/347 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 230 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASQFSE 289

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ GT
Sbjct: 290 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREICRGCNVLCGT 349

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
            GRL D I RGK + +  L+ +VLDEAD MLD+GF  D+  ++ S    S +KR+ LMFS
Sbjct: 350 LGRLLDVIGRGK-VGLHKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPSKEKRQTLMFS 408

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++ + + V    +   +++IL+  G +
Sbjct: 409 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFSKREQLLDILKTTGTE 468

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R GR  V +AT VAA
Sbjct: 469 RTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRSGRCPVLVATSVAA 528

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V F  P N
Sbjct: 529 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDN 575


>gi|242053633|ref|XP_002455962.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
 gi|241927937|gb|EES01082.1| hypothetical protein SORBIDRAFT_03g028090 [Sorghum bicolor]
          Length = 588

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 197/352 (55%), Gaps = 19/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLAENDRF 69
           +A+ + GY  +T VQ A L   L+ KDVL  A+TG+GKTVAF    + + STL  E ++ 
Sbjct: 134 KAVKDAGYERMTEVQAATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEVLSTLPRERNQL 193

Query: 70  SPASAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAH 126
            P   P+  L + PTRELA QV  E  + L     + V V IGG  + +E+R +Q N   
Sbjct: 194 RP---PINLLVMCPTRELANQVAVEARKLLRYHRSLGVQVVIGGTRLTQEQRSMQANPCQ 250

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGRL DH+    G    +  +K +VLDEAD +LD+GFR DIE I+ S P++R+ L
Sbjct: 251 ILVATPGRLKDHLENTPGFSSRLKGVKVLVLDEADRLLDMGFRRDIEKIIASIPRERQTL 310

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+   +  ++    +KD   VN   E  +  H+ +    ++  L    + + ++L+
Sbjct: 311 LFSATVPEEVRQISHVAMKKDYRFVNTVKEGDEETHAQVSQMYMVAPLDLHFSILYDVLK 370

Query: 241 YHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            H A++A    I+FC+T        +VL++    +  +    SQ  R+      R  +  
Sbjct: 371 KHVAEDADYKVIIFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGL 430

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +++DV+ARG+D PD+ LVI   + ++ E  +HR GRTGR G++G  + ++
Sbjct: 431 ILVSSDVSARGVDYPDVTLVIQVGIPADREQYIHRLGRTGRKGKEGQGLLLL 482


>gi|240274195|gb|EER37713.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H143]
 gi|325095426|gb|EGC48736.1| ATP-dependent RNA helicase DBP3 [Ajellomyces capsulatus H88]
          Length = 487

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 190/325 (58%), Gaps = 14/325 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S      A+ I PTRELA+Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRIS-AVIITPTRELAMQIYDQL-VK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +   GV +A   GG S   +RR L+  A ++V TPGRL D    + LN+  +K +VLDEA
Sbjct: 166 FTPNGVGLACIYGGASKDDQRRALKK-ASVIVATPGRLKDFHSDESLNLKKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211
           D MLD GF  DI+ IL + P  +KR+ +MF+AT   ++  LA  + K+ + V I    +S
Sbjct: 225 DRMLDKGFEQDIKDILSAMPSSRKRQTVMFTATWPISVRKLATTFMKEPITVTIGGDLSS 284

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266
           + R ++ I     +V   ++++ ++++L +Y   +NA    +VFC  +   +R  + +  
Sbjct: 285 DIRANTRIKQIVEVVKPENKESRLLSLLNQYQRGRNAMDKVLVFCLYKKEATRIERFIRS 344

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F+V  + G+++Q ER N+L   + G   V +ATDVAARG+D+P ++LV++       E
Sbjct: 345 KGFKVAGIHGDMNQTERFNSLDAFKLGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVE 404

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +HR GRTGRAG  G+++ +  +N
Sbjct: 405 DYVHRIGRTGRAGSDGLAITMFTEN 429


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 191/341 (56%), Gaps = 3/341 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +A++++     T +Q+  +   L  +D++  A+TGSGKT  F     S ++ +    
Sbjct: 315 ILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIM-DQPYL 373

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P+AL +APTRELA Q+  E         +   V  GGVS  ++ ++L+ G  I+V
Sbjct: 374 EKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIV 433

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I+ K   ++ +  +VLDEAD+M D GF   +  I++     R+ L+FSAT 
Sbjct: 434 ATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATF 493

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            P +   A+    D ++++I      +SDI     VL + SD+ N + N L    ++ ++
Sbjct: 494 KPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSV 553

Query: 249 -VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            +F ST+ +V + +  L +  FQ   L G+ +Q ERS  +Q  ++G+  + IATDVAARG
Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARG 613

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+P ++ V++ + S + E+  HR GRTGRAG  G++  +I
Sbjct: 614 LDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLI 654


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 36  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 90  VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 150 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 209

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 210 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 269

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 270 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 329

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  +  R    + +  NV V  E  PS
Sbjct: 330 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDIQKFYNVVV--EELPS 384


>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
          Length = 701

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 191/374 (51%), Gaps = 29/374 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
            P  + +A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    T L 
Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367

Query: 65  ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ +L+  P      
Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+S AI  LA+ Y +    V+I S  +    
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V    +   +V +L        I+F + +      +K L +  F+   L G  
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q +R  ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667

Query: 339 GRKGMSV-FVIPQN 351
           G+ G ++ F+ P +
Sbjct: 668 GKHGKAITFLTPDD 681


>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 436

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 181/338 (53%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++ +GY + + +Q   +   L  KD++ +AQTG+GKT  F L L   L     + +
Sbjct: 12  ILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLELL--NRGKHA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  I+V 
Sbjct: 70  RGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKLRKGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 130 TPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V V+++  N     ++     V  + +  A++ +++ +  +  +VF
Sbjct: 190 DDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G+ R  +ATD+AARG+D+
Sbjct: 250 SRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 SQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLV 347


>gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074]
 gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 538

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 194/361 (53%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+  G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L    
Sbjct: 85  LPEPLLTALAAEGMAEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LARTA 141

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A APLAL + PTRELA QV   L       G+ +A  +GG+S++++   L+ G  
Sbjct: 142 GRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRMATVVGGLSLNKQASALRRGTE 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMF 185
           +VV TPGRL D +      +  +   VLDEAD+M D+GF   +  +LD ++P  +RML F
Sbjct: 202 VVVATPGRLKDLLDRGDCRLDQVAVSVLDEADQMTDMGFMPQVTALLDRTAPDGQRML-F 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y  D V  ++       + +++  + VA  D D   V +       
Sbjct: 261 SATLDRNIDRLVRGYLSDPVVHSVDPSAGAVTTMEHHVLYVA-DDTDKKAVALRIAARDG 319

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S  RF K L  +  +  AL G  SQ +R+  L+  ++G+    +AT+VAA
Sbjct: 320 RVIMFVDTKRSADRFAKRLLANGVRASALHGGRSQPQRNRTLEQFKNGQVTALVATNVAA 379

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL   A +
Sbjct: 380 RGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMSAARI 439

Query: 366 S 366
           +
Sbjct: 440 T 440


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/381 (32%), Positives = 200/381 (52%), Gaps = 26/381 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEAL++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++ E 
Sbjct: 135 LGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPIISGIMREQ 194

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P       PLAL ++PTREL+ Q+  E +    +TGV V V  GG  ++++ R+L+
Sbjct: 195 YVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELE 254

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++      P 
Sbjct: 255 RGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 314

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  LA ++    + + +         I  R   V  +D+ + ++++
Sbjct: 315 RRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETDKRSHLMDL 374

Query: 239 LRYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           L  H  +           +VF  T+         L  + F    + G+ +QQER  AL+ 
Sbjct: 375 L--HAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQEREMALRS 432

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     
Sbjct: 433 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFN 492

Query: 350 QN---MQRRAERLFREANVSV 367
           +N   + R    L +EAN  V
Sbjct: 493 ENNLSLARPLADLMQEANQEV 513


>gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c]
 gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c]
          Length = 501

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 89  VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 148 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 201

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 202 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 262 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  +L + + G+  + +ATDVA
Sbjct: 322 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 382 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 427


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 172/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  + +P  
Sbjct: 15  ALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAPNC 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT S  I
Sbjct: 134 RLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   S +    V V    + +  +++++ H     +VF  T
Sbjct: 194 RLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGLDIDDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 348


>gi|194068383|dbj|BAG55012.1| vasa [Saccostrea kegaki]
          Length = 422

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/319 (37%), Positives = 180/319 (56%), Gaps = 11/319 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + ++        FS    P AL +APTRELAVQ+  + 
Sbjct: 12  RDLMACAQTGSGKTAAFILPVLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDA 71

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVV 153
                 T +   V  GG SV  + R ++ G HI+VGTPGRL D I GKG ++++ LK ++
Sbjct: 72  RKFAYGTMLRPVVLYGGTSVGYQLRQVEQGTHILVGTPGRLIDII-GKGKISLAKLKYLI 130

Query: 154 LDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           LDEAD MLD+GF  DI  I   L + PK +R+ LMFSAT    I  +A ++  D + + +
Sbjct: 131 LDEADRMLDMGFGPDIRKIVEELGTPPKTERQTLMFSATFPKEIQEMAGDFLNDYLFLTV 190

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                  +D+      V   ++ + + +IL   G +  +VF   + +       L+++ F
Sbjct: 191 GRVGGACTDVTQTVFEVDRQEKRSRLCDILTETGTEKTLVFVEQKRNADFLASYLSQNGF 250

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
              ++ G+  Q ER  AL+  + G+A V IAT VAARG+D+P ++ VI+ +L S+ +  +
Sbjct: 251 PTTSIHGDRLQAEREEALRDFKTGKAPVLIATSVAARGLDIPLVKHVINYDLPSSIDEYV 310

Query: 330 HRSGRTGRAGR--KGMSVF 346
           HR GRTGR G   K MS +
Sbjct: 311 HRIGRTGRCGNLGKAMSFY 329


>gi|111225403|ref|YP_716197.1| ATP-dependent RNA helicase-like protein [Frankia alni ACN14a]
 gi|111152935|emb|CAJ64683.1| DEAD-box protein family; ATP-dependent RNA helicase-like protein
           [Frankia alni ACN14a]
          Length = 532

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/325 (36%), Positives = 178/325 (54%), Gaps = 4/325 (1%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +QE  L   L   D++  A+TG+GKT+AFG+ +  T+LA ++       P AL + PTRE
Sbjct: 6   IQELTLPLALARNDIIGQARTGTGKTLAFGIPIVQTVLAASEGAD--GRPQALVVVPTRE 63

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           L VQV  ++    A  G+ V    GG +   +   L+ G  IVVGTPGRL D  R + L+
Sbjct: 64  LCVQVTSDVTRAGAGRGLRVLSVYGGRAYEPQLTALRAGVDIVVGTPGRLLDLARQRVLD 123

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA- 204
           ++ ++ +VLDEADEMLDLGF  D+E I+   P  R+ ++FSAT+   + +LA+ + +   
Sbjct: 124 LAAVRTLVLDEADEMLDLGFLPDVERIMAQLPTSRQTMLFSATMPGPVISLARRFMQRPV 183

Query: 205 -VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            VR     E R               D+   +  +L+  G   A+VF  TR +  +  + 
Sbjct: 184 HVRAEQPDETRTVPTTHQHVFRAHALDKMEVLARVLQAGGRGLAMVFVRTRRTADKVAED 243

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +  F   A+ G+L Q +R  AL+  R G+  V +ATDVAARGID+  +  V++ +   
Sbjct: 244 LDKRGFAAAAVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDISGVTHVVNYQCPE 303

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    LHR GRTGRAG  G++V  +
Sbjct: 304 DENVYLHRIGRTGRAGESGVAVTFV 328


>gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 415

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 189/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + +
Sbjct: 71  LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 193/377 (51%), Gaps = 9/377 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY   T +Q   +   L  KD++ SAQTG+GKT  F L L   L A N 
Sbjct: 10  PEIL-RAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTA-NQ 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    +   V +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-RE 362
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL  RE
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKRE 367

Query: 363 ANVSVV--WEPAPSVEA 377
                +  +EP PS+ A
Sbjct: 368 IPRMAIPGYEPDPSIPA 384


>gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 661

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 196/386 (50%), Gaps = 50/386 (12%)

Query: 8   PQVIGEALSERGYVNLTSVQEAIL----------NPDLREKDVLVSAQTGSGKTVAFGLA 57
           P++I  A+++ G+   T+VQ+ ++          +   R  D++VS+QTGSGKT AF L 
Sbjct: 85  PELIA-AVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLLP 143

Query: 58  LASTLL------------------------------------AENDRFSPASAPLALAIA 81
           +  TLL                                      N R   A+ P AL + 
Sbjct: 144 VLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATPGALILC 203

Query: 82  PTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA QV  + +E +    G+ VA  +GG+    +   LQN A +VV TPGRL D  R
Sbjct: 204 PTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKLQN-ADLVVATPGRLLDLQR 262

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              + +  +K +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA+  
Sbjct: 263 SMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 322

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259
            ++  R+ I S   +H++I         S     +++  LR      AIVF ST+     
Sbjct: 323 MREPQRITIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 382

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 383 LANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 442

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
            L    E+  HR GRTGRAGR G+++
Sbjct: 443 GLPMKAEDYTHRIGRTGRAGRDGLAI 468


>gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
          Length = 733

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 182/356 (51%), Gaps = 27/356 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L +    LA   R  P 
Sbjct: 326 KAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM----LAYISRLPPM 381

Query: 73  S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           S       P A+ +APTRELA Q+  E        G  V   +GG S+  +   +  G  
Sbjct: 382 SEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 441

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------- 179
           IV+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P         
Sbjct: 442 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501

Query: 180 ----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                     R   MFSAT+ P +  LA+ Y ++ V V I +  +    I    +++  S
Sbjct: 502 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKES 561

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  SQ++R  +L+ 
Sbjct: 562 EKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEG 621

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            R  R  V +ATDV  RGID+PD+  VI+ ++  + E   HR GRTGRAG+ G++ 
Sbjct: 622 FRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 677


>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 465

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 185/342 (54%), Gaps = 2/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L   L +  
Sbjct: 8   LSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERLSSGT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + L+ G  
Sbjct: 68  K--AKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P+KR+ LMFS
Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++A++N     +      V  + +   + +++R +  + 
Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRSNNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  AL+  + G  RV +ATD+ AR
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATDIVAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I E L  +G+   T++Q   +   L  +D++  AQTGSGKT+A+ +  +  
Sbjct: 120 FEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY-VVPSLV 178

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +   +       P+AL +APTRELA Q+ +      ++         GG     + RDL
Sbjct: 179 HIQHQESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDL 238

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 239 ERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 298

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
           +LM+SAT    +  LA+ +  D +++NI S N   +    + V V    ++D  ++ +L 
Sbjct: 299 VLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 358

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              A+     I+F  T+  V   T+++  + ++ VA+ G+ SQQER   L   R+GR  +
Sbjct: 359 EISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGI 418

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 419 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 478

Query: 358 RL---FREAN 364
            L    REAN
Sbjct: 479 DLINVLREAN 488


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 176/332 (53%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY   T +Q   +   L+ +D+L  AQTG+GKT AF L + + LL    R  P  
Sbjct: 16  ALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILNHLLTSKGRAHPKG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL +APTRELA Q+               AV  GGV   R+   L+ G  ++V  PG
Sbjct: 76  A-RALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQIEALRRGVDVLVAAPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    ++++ L+ +VLDEAD MLD+GF  DI  I+ + P  R+ L+FSAT+  +I
Sbjct: 135 RLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPTDRQTLLFSATMPKSI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           + LA    +D   V +   +     I    + V   ++  A+  ++     + A+VF   
Sbjct: 195 SELAHGLLRDPATVQVTPPSSTVDRIRQAVMYVDTGNKREALKLLVDSPKVERAVVFTLM 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++    L EH     A+ G  SQ  R  A+   R G  +V +ATD+AARGID+ D+
Sbjct: 255 KHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVLVATDIAARGIDVDDV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V + +L + PE+ +HR GRT RAGR G +V
Sbjct: 315 THVFNYDLPNVPESYVHRIGRTARAGRDGWAV 346


>gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 521

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 197/379 (51%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L    
Sbjct: 85  MPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTA 141

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA 
Sbjct: 142 GRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGAE 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD  +P  +RML F
Sbjct: 202 VVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRML-F 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+      I    G  
Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG-- 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L+  + G   V +AT+VAA
Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P +  +R  +A+
Sbjct: 439 T------PQIAQVRSGEAE 451


>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 450

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 190/365 (52%), Gaps = 10/365 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            +IF   PQ I   + + GY   T +QE ++   L  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FEIFRFHPQ-INAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+       P     A+ + PTRELA Q+   +E L   TG+      GGV    + + 
Sbjct: 62  HLMR-----GPRGRVRAMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I V  PGRL DH+    L + HL+ + LDEAD+M D+GF  D+  IL  +P +R
Sbjct: 117 LRRGVEIAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVER 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  A+ +LA+   +D + V I   +   + + +    V    + + ++ +L 
Sbjct: 177 QTMLFSATMPDAVRSLAREALRDPLTVQIG-RSAPVATVTHAIYPVPEHLKTSLLIELLE 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A++ ++F  T+    R    LA   ++  +L G LSQ  R  AL   R GR ++  A
Sbjct: 236 RTDAESVLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILTA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAE 357
           TD+AARGID+  +  VI+ ++    E   HR GRTGRA R G +  ++ +    M R  E
Sbjct: 296 TDIAARGIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIE 355

Query: 358 RLFRE 362
           RL  E
Sbjct: 356 RLIGE 360


>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
 gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
          Length = 454

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLQNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   +    RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|322815569|gb|EFZ24204.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 544

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 199/377 (52%), Gaps = 13/377 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A +E G+ N T +Q A + P ++E +D++  AQTGSGKT A+ L L + LL +    S  
Sbjct: 84  ACAEAGWQNPTRIQAATI-PVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ----SKV 138

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QV  +   L    G+ VA  +GG  +  +  +L    H+VVGTP
Sbjct: 139 PYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPHVVVGTP 198

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR+ DH++  KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P  R+ ++FSAT++ 
Sbjct: 199 GRIKDHLQNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLFSATLNT 258

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L K    D V + +  +N     +    V    +   + +   L      + +VFC
Sbjct: 259 KIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLSYLHLYLTRETGNHILVFC 318

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            + A V R T  L     Q + L G + Q  R+ AL   ++G+ R+ + TDVA RG+D+ 
Sbjct: 319 RSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRILVCTDVAQRGLDIS 378

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
             ++V++  L    E+ +HR GRT RAG +G +V +I Q      +R+  EA   V  E 
Sbjct: 379 HTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI--EATTGVKCEE 436

Query: 372 APSVEAIRERDAQRILQ 388
            P    ++E D   +LQ
Sbjct: 437 WP----VQEGDVAAVLQ 449


>gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 427

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L+ GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L        +   + SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNAPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHQWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 89  ---DTTLRETQILCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 186/356 (52%), Gaps = 21/356 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   GY   T +Q   +   L  +D++ SAQTG+GKT +F L     LL  
Sbjct: 7   NLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLTP 66

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               SP     P  L + PTRELA+QV   +        V     +GG+    +   L  
Sbjct: 67  ----SPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF +D++ I +++P +R+ L
Sbjct: 123 PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAI 235
           +F+AT+  A+  LA+   KD VRV        N+  E R H   D R        ++  +
Sbjct: 183 LFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMR-------HKNRLL 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++       AI+F +T+    +    L        AL G++SQ  R+  + MMR G+ 
Sbjct: 236 QHLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKV 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           R+ +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N
Sbjct: 296 RLLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMN 351


>gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101]
          Length = 407

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 11/350 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--- 73
           E+GY N + +Q   +   L  +DV+ +AQTG+GKT  F L +   L     R  P +   
Sbjct: 3   EKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERL-----RHGPHARNN 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGV ++ +   L+ GA ++V TPG
Sbjct: 58  VVRALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPG 117

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   + ++ ++ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSAT   +I
Sbjct: 118 RLMDLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASI 177

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     + V++    ENR  + +++      ++ + + + ++++ +  +  +VF  T
Sbjct: 178 KKLATGLLHNPVQLQATPENRTATTVEHLLHPCDMARKPDLLCHLIKSNDWQQVLVFSRT 237

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+  L
Sbjct: 238 KHGANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQL 297

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
             V++ +L +  E+ +HR GRTGRAG  G +V ++      + R  ERL 
Sbjct: 298 PHVVNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLI 347


>gi|289641997|ref|ZP_06474151.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289508183|gb|EFD29128.1| DEAD/DEAH box helicase domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 446

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/347 (37%), Positives = 177/347 (51%), Gaps = 3/347 (0%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +Q A L   L  ++VL  A TGSGKT+ FGL + + L A+N   +P   P  L + PTRE
Sbjct: 1   MQAATLPDVLAGENVLGRASTGSGKTLGFGLPMLAEL-AKNRAVAPGR-PRGLILVPTRE 58

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV   L+ L    G+ +    GG S+ R+   L+ G HIV+ TPGRL D I     +
Sbjct: 59  LAQQVHDALDPLSRPLGLRLRAVYGGTSISRQIGSLRRGVHIVIATPGRLTDLIERGACS 118

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +  +   VLDEAD M DLGF   +  +LD++P   + L+FSAT+   +  L + Y  + V
Sbjct: 119 LEEIAITVLDEADYMCDLGFLPAVRALLDATPAGGQRLLFSATLDREVEVLVRQYLPNPV 178

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
            V I SE  Q S +   A+  A       +V  L   G+   +VF  T+    R  + L 
Sbjct: 179 LVAIDSETAQVSTLSRHALEAADPAAHTRLVTAL-AGGSGRTLVFARTQRGADRLAEQLT 237

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
                   L G ++Q  RS AL    +G  RV +ATDVAARGI +  +++V+HA L S+P
Sbjct: 238 RSGVPAQPLHGGMAQNARSRALAGFAEGAHRVLVATDVAARGIHVDGVDIVVHAGLPSDP 297

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +   HR GRT RAG  G  V V     +     L R A      EPA
Sbjct: 298 KTYQHRGGRTARAGAHGADVLVSLPEERGLVRALLRAAGSDAQPEPA 344


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  ++       +       L
Sbjct: 49  GFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI------DTSLRETQCL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + L  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 103 VLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 163 IRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMTS 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 223 KFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 283 DWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 150 FPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLP-AVVHINNQ 208

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 209 PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLERGVE 268

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 269 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 328

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D    IV +++    
Sbjct: 329 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDESEKIVKLIQLLTQ 384

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 385 ISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 444

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 445 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 504

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 505 LIQVLREANQTI 516


>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 463

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 188/342 (54%), Gaps = 7/342 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + EA++  G+   + +Q+  +   L  +D++  A+TGSGKT AF + +  +LL    R 
Sbjct: 39  TLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQSLLRSPQRL 98

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL +APTRELA Q+  + E L A  G+  A  +GG+ +  ++  L    HI++
Sbjct: 99  ------YALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKPHIII 152

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG ++  +K +VLDEAD ML + F ++I  I+   P +R   +FSAT
Sbjct: 153 ATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTYLFSAT 212

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +    + +++ I  +     ++    + +    +D  +  IL     ++ +
Sbjct: 213 MTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNEVAGQSIL 272

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F ST     + T +L    FQ + L G++SQ  R  AL   +    ++ + TDVA+RG+
Sbjct: 273 IFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVCTDVASRGL 332

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P +++V++ ++ ++ ++ +HR GRT RAGR G++V  + Q
Sbjct: 333 DIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQ 374


>gi|149511217|ref|XP_001519340.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 757

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 212/393 (53%), Gaps = 18/393 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG   L  +Q          KDV+  A+TG+GKT +F + L   L  +         
Sbjct: 187 LKARGVTYLFPIQAKTFGHVSSGKDVIAQARTGTGKTFSFAIPLIEKLQRDLKDQKRGRL 246

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA+QVGR+   +  K  + VA   GG + + +   ++NG  I+VGTPGR
Sbjct: 247 PKVLVLTPTRELAIQVGRDFSDITKK--LTVACFYGGTAYNGQINHIRNGIDILVGTPGR 304

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSATI 189
           + DHI+   LN++ L+ VVLDE D+MLD+GF + +E IL  + KK      + L+FSAT 
Sbjct: 305 IRDHIQSGRLNLTSLQHVVLDEVDQMLDMGFAEQVEEILSVAYKKDSEDNPQTLLFSATC 364

Query: 190 SPAITTLAKNYQK-DAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +  +AK Y K    +V++  +  Q +   +++ A+    + R   I  +++ +   +
Sbjct: 365 PHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAAVIGTVIQVYSGTH 424

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              IVFC T+   +  +  L+  + Q   +L G++ Q++R   L+  R G   V +AT+V
Sbjct: 425 GRTIVFCRTKKEATELS--LSPAIKQDAQSLHGDIPQKQREITLKGFRSGAFGVLVATNV 482

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ V       + +  ++ ++A
Sbjct: 483 AARGLDIPEVDLVVQSSPPEDVESYIHRSGRTGRAGRTGICVCFYQAKEEYQLSQVEQKA 542

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
            ++      P+   + +  ++ +L+    LDSI
Sbjct: 543 GITFKRIGVPTTSEVVKASSKDVLRS---LDSI 572


>gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
 gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
          Length = 487

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 193/372 (51%), Gaps = 19/372 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + LS  GY     +Q   +   L+  D+L  A TGSGKT AF L L   +  +  RF 
Sbjct: 17  IVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQNIDIK-QRFV 75

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNGAHIV 128
                  L I PTRELA+Q+G    +       ++  AV  GG +   +  DL+   HI+
Sbjct: 76  QG-----LIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKKNPHII 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL DH+  +GL+IS LK +++DEADEML +GF +DIE I+   P  R+  +FSAT
Sbjct: 131 IGTPGRLLDHL-SRGLDISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  +I  L+  +  +   + I       +DI     LV    +  A++  L     +  I
Sbjct: 190 LPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHGISKHEALMRFLEVEKFEAVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+++  + +++L    +   AL+G+++Q  R   +  +R G   + I TDVAARG+
Sbjct: 250 IFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILITTDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF------RE 362
           D+  +  VI+ ++  N    +HR GRTGRAGR G S+  +    +R+   LF      R 
Sbjct: 310 DINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFV----ERQEYHLFNYVIKRRV 365

Query: 363 ANVSVVWEPAPS 374
            N ++V    P+
Sbjct: 366 LNSNIVKVKCPT 377


>gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
          Length = 398

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 185/338 (54%), Gaps = 8/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L       +R+ 
Sbjct: 23  AIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERY- 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
               P AL IAPTREL VQ+ ++   L   TG+ V   +GG+   ++ + L+     I+V
Sbjct: 82  -MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILV 140

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
            TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  R+ L+FSA
Sbjct: 141 ATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSA 200

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +  +  
Sbjct: 201 TFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERV 260

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATDVA RG
Sbjct: 261 MVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRG 320

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I +  +  VI+  L  +P++ +HR GRTGRAG  G+S+
Sbjct: 321 IHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSI 358


>gi|303256348|ref|ZP_07342364.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
 gi|302861077|gb|EFL84152.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
          Length = 510

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 159/287 (55%), Gaps = 7/287 (2%)

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTREL +QV   +      +GV V    GG    R+ + L  G  IVV TPGR  D
Sbjct: 2   LILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPGRALD 61

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HIR   LN++ +KAVVLDEADEMLD+GF +D+E I  + P+KR+  +FSAT+ P I  +A
Sbjct: 62  HIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKIAKIA 121

Query: 198 KNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +N+  DA  + I  E     +   +   A +V  + +  A+  IL     + AIVF  TR
Sbjct: 122 ENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPRLAIVFARTR 181

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L    + V  L G L Q +R   ++  R  +  V +ATDVAARGID+  L 
Sbjct: 182 NEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDIDHLT 241

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VI+  + S+ E  +HR GRTGRAGR+G ++ +    ++ R  RL +
Sbjct: 242 HVINFGIPSSAETYVHRIGRTGRAGREGTAITI----LEPRESRLLK 284


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/352 (34%), Positives = 178/352 (50%), Gaps = 4/352 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F + L   L  E  + +  S
Sbjct: 15  ALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPKVAANS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA QV   +        +      GGVS++ +   L+ G  I+V TPG
Sbjct: 75  A-RALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDILVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L ++ L+ +VLDEAD MLDLGF +++  I    PKKR+ L+FSAT S  I
Sbjct: 134 RLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLFSATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   + +    V V    +    V+++R    K  +VF  T
Sbjct: 194 RLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMRKGRWKQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATDVAARGLDIEDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
            LV++ +L    E+ +HR GRTGRAG  G ++ ++     NM    E L R+
Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEMLTRQ 365


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E    +  +  +   C+ GGV   ++ RDL  G+
Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECS-KFGHSSRIRNTCVYGGVPKSQQIRDLSRGS 237

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 238 EIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 297

Query: 186 SATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRD--NAIVNILRY 241
           SAT    +  LA +Y  D ++V + S   +  H+      V+     RD  N  +     
Sbjct: 298 SATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQ 357

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR+ + +AT
Sbjct: 358 DNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVAT 417

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++ F   QN    A+   
Sbjct: 418 DVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLIS 477

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 478 IMREANQNI 486


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 191/363 (52%), Gaps = 16/363 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E I +++   +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   +   +L
Sbjct: 202 IEGIHEILLANIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFPIIMRML 261

Query: 64  AENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            +    +P  +         P+AL ++PTRELA+Q+  E       TG+   V  GG  +
Sbjct: 262 KDGPPPTPQQSSLRIKRVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVLYGGSEI 321

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFI 172
             +  DL  G+ IVV TPGRL D I RGK + +  +K ++LDEAD MLD+GF   I E I
Sbjct: 322 RNQILDLDRGSDIVVATPGRLRDLIDRGK-VYLKLIKFLILDEADRMLDMGFAPQIREII 380

Query: 173 LDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            DS    S + R+ +MFSAT    I  LAK++    + + +         I  R V    
Sbjct: 381 EDSDMPHSLEGRQTVMFSATFPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRVVYAEE 440

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER +AL+
Sbjct: 441 DHKPRLLVKLLMEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQEREHALR 500

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G++   +
Sbjct: 501 LFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGLATSFV 560

Query: 349 PQN 351
            +N
Sbjct: 561 NEN 563


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 189/341 (55%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 28  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSL--- 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 85  ---DTTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 142 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 202 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 262 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 322 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 362


>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 483

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 191/372 (51%), Gaps = 8/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L + E       
Sbjct: 15  AIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSREAQNKGKG 74

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P+ AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V T
Sbjct: 75  RRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGGVDILVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S 
Sbjct: 135 PGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     +   V +   N     +      V    +   +  ++  +  +  +VF 
Sbjct: 195 EIKALANKLLTNPASVEVVRRNSPSELVTQNVHFVDKRRKRELLSQLIGENNWQQVLVFT 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+D+ 
Sbjct: 255 RTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGGIRVLVATDIAARGLDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV 368
            L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +     + 
Sbjct: 315 QLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIPRIA 374

Query: 369 ---WEPAPSVEA 377
              +EP PS++A
Sbjct: 375 IEGYEPDPSIKA 386


>gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
 gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
          Length = 565

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 8/368 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           I +A+ E+GY   T++QE  +   L+  D+L  AQTG+GKT AF L L   L    +  +
Sbjct: 12  ILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLLHNLTMRRSAQN 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           ++   +   AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  I
Sbjct: 72  KWG-GNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQIARVKKGVDI 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK ++ L+FSA
Sbjct: 131 LVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLPKDKQSLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+   K+   V +   N     I      V  S +   + +I+        
Sbjct: 191 TFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQSVHTVGRSKKKALLAHIINAQDWSQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +ATD+AARG
Sbjct: 251 LVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGEIRALVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREAN 364
           ID+ +L  V++ E+ + PE+ +HR GRTGRAGR+G +V ++    Q      ER F +  
Sbjct: 311 IDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQGFMAEIER-FTKQQ 369

Query: 365 VSVVWEPA 372
           ++VV  PA
Sbjct: 370 IAVVETPA 377


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+  R  
Sbjct: 12  ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 71  -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSAT 
Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + + +++   N     ++       +  +   +  +++    +  +V
Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWRQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 297 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 355

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 356 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 415

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 416 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 475

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 476 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 535

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 536 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 595

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 596 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 643

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 644 ERNINIT 650


>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 443

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/328 (35%), Positives = 184/328 (56%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +N  FS A  P AL +APT
Sbjct: 25  TEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KNKAFS-AKDPRALVLAPT 82

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  EL  +         + +GG + + + + L+     +V TPGRL DH+  + 
Sbjct: 83  RELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRKYPKFIVATPGRLADHLEHRS 142

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201
           L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A +  +A    
Sbjct: 143 LFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 202

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
               R+ + + + +H DI  +  L    D   AI+  IL     K  I+F +TR    R 
Sbjct: 203 DAPKRIAVGAASEEHKDITQKFYLCDHLDHKEAILERILEEAQYKQLIIFTATRIDTERL 262

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ ++  V++ +
Sbjct: 263 TQKLNEKKLKAVALSGSLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVVNFD 322

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG KG +V ++
Sbjct: 323 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 438

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 195/361 (54%), Gaps = 13/361 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ +A+ E G+   T++Q  ++   +  +DV+ SA TG+GKT AF L +   ++ +  R 
Sbjct: 11  VLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIMQHMI-DFPRR 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P  A  AL + PTRELA+Q+  + E L A T + VA  IGGV+  ++   L+    I++
Sbjct: 70  RPGPA-RALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPALEKTVDIII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  +I  +  +   ++ +VLDEAD MLD+GF  D++ I   +  +++ ++FSAT+
Sbjct: 129 ATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRKQTMLFSATL 188

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGA 244
             A +   A++  KD   +       +   I     LV  +D      N+L+Y       
Sbjct: 189 EGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQ---LVYFADTAEHKFNLLKYLLQQEDV 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +I+F  TR  ++     L  +      L GE+ Q++R  AL   R  R ++ +ATDVA
Sbjct: 246 TRSIIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVKILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           +RGIDLPD+  V + ++  + +  +HR GRTGRAG+KG ++ +I  +   M  R ER   
Sbjct: 306 SRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMMERVERYAE 365

Query: 362 E 362
           E
Sbjct: 366 E 366


>gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 427

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 8/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+         + 
Sbjct: 24  LTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDDKTGAY 83

Query: 75  PLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              L + PTRELA QV          L  K  +V A   GGVSV+ + + L+ GA ++V 
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAA--FGGVSVNAQMQSLRAGADVLVA 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSAT  
Sbjct: 142 TPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSATFP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L        +   + SE  Q S I  R + V    +   + ++++ H    A++F
Sbjct: 202 EEVRELTAKLLNAPLEYQLQSE--QESTIHQRVITVNRPMKTALLAHLIKEHEWSQALIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARGID+
Sbjct: 260 VSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +P + +HR GR+GRAG  G++V +I
Sbjct: 320 DKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLI 357


>gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 373

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 186/342 (54%), Gaps = 7/342 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A++E GY   T +Q   +   L  KD++  AQTG+GKT AF + +   L   
Sbjct: 8   NLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPILQLL--- 64

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
             +++P    +  L + PTRELA+Q+      +Y+K   +  + I GGVS   +   L+ 
Sbjct: 65  -KKYTPDHKEIRTLILTPTRELAIQIEENFA-VYSKYLPLSQLSIYGGVSAGGQLAALRK 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D +  + +++S ++  VLDEAD MLD+GF +D++ +L   P+KR+ L
Sbjct: 123 RVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIPQKRQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+   I   A+    + V+V +   +     +      V   D+   ++++L+   
Sbjct: 183 FFSATMPSGIRKFAETILNNPVKVTVTPVSSTAQTVKQSVYFVEKRDKTGLLIDLLQNEN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + ++VF  T+   ++  + L        A+ G  SQ  R NAL   +  + +V IATD+
Sbjct: 243 MRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKVLIATDI 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARGID+ DL  V++ EL + PE  +HR GRTGRAG +G ++
Sbjct: 303 AARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAI 344


>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
 gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
          Length = 526

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/388 (35%), Positives = 193/388 (49%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    PKKR+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYH-- 242
               K++ K++    IAS   E  Q SD+      D R +L A  DRD  ++  LR +  
Sbjct: 192 ----KDFIKESSIFPIASDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              + N ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 187/341 (54%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + +   G+   +++Q   +   +R +D +  AQ+G+GKT  F + + S +  +
Sbjct: 30  NLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSLIDTK 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          AL ++PTRELA Q+   +E L     V    CIGG  V  + + LQ G 
Sbjct: 90  SKDCQ------ALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQ 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+ GTPGR+ D I+ + +   H+K +VLDEADE+L  GF++ I  I  + P   ++++ 
Sbjct: 144 HIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGAQVVVV 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT++P +  +   +  D V++ +  ++     I    +     D + + + ++      
Sbjct: 204 SATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNLTI 263

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+A V+     + +  F V A+ G++ Q++R + ++  R G  RV I+TDV 
Sbjct: 264 TQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVW 323

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG ++
Sbjct: 324 ARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAI 364


>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
 gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 462

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 187/342 (54%), Gaps = 3/342 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A++E+GY+  T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+ +N+
Sbjct: 10  PEIL-RAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLV-QNE 67

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +    P+ AL + PTRELA Q+G  +        +   V  GGVS++ +   L++G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMMKLRSGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYVHFVDKKRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  TL       +       L
Sbjct: 51  GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQTL------DTTLRETQVL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 105 ILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 165 IRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTS 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 225 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 284

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER N ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 285 DWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 344

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 NYDLPNNRELYIHRIGRSGRFGRKGVAI 372


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/331 (33%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++     T++ E          
Sbjct: 32  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQ-------- 83

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  L     V    CIGG +V  + R L+ G H+V GTPGR+
Sbjct: 84  -ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQHVVSGTPGRV 142

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  
Sbjct: 143 ADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLD 202

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 203 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 262

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 263 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 322

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L SN EN +HR GR+GR GRKG+++
Sbjct: 323 LVINYDLPSNRENYIHRIGRSGRFGRKGVAI 353


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 179/340 (52%), Gaps = 6/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L        
Sbjct: 12  ILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLERLAGG----C 67

Query: 71  PASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           PA +    AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA ++
Sbjct: 68  PARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRMRKGADVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT
Sbjct: 128 VATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK    D V +++   N+    +      V    + N +  +L     K  +
Sbjct: 188 FSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPVDKKKKPNLLTKLLSERNWKQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++ +  L        A+ G  SQ  R+ AL   + G  RV +ATD+AARG+
Sbjct: 248 VFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVLVATDIAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++
Sbjct: 308 DIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLV 347


>gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
 gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
          Length = 415

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 185/338 (54%), Gaps = 2/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL   D  
Sbjct: 19  IVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPN 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G  I++
Sbjct: 79  LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSA 187
           GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ R  ++FSA
Sbjct: 139 GTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQARLTMLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA     D   + I  E +    I       +  D+   ++ ++     +  
Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERC 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDILVATDVAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 196/356 (55%), Gaps = 13/356 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F +I     I   +    + N T VQ+  +   L+ +D++  AQTGSGKT AF   +
Sbjct: 184 IKLFADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPI 243

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              ++    +  R    + P+AL ++PTRELA+Q+  E      +TGV   V  GG    
Sbjct: 244 IHGIIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAA 303

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R+++ G  +++ TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++ 
Sbjct: 304 QQFREMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQ 363

Query: 176 ----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSD 230
                P  R+ ++FSAT    I  +A ++ +D + + +      H+ I      V + +D
Sbjct: 364 RGMPPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYND 423

Query: 231 RDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +   +++++  H  +   +VF  T+    +    L++  F   ++ G+ +QQER  AL+ 
Sbjct: 424 KCQMLMDLV--HAVQGLTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKS 481

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            R G+  + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG+KG++ 
Sbjct: 482 FRSGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLAT 537


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVI------DTVVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L+ G H+V GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLEYGQHVVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + LVI
Sbjct: 278 DWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L SN EN +HR GR+GR GRKG+++
Sbjct: 338 NYDLPSNRENYIHRIGRSGRFGRKGVAI 365


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 187/348 (53%), Gaps = 7/348 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 353 NFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNV 400


>gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea]
          Length = 354

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 189/352 (53%), Gaps = 9/352 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D ++      AL +APT
Sbjct: 5   SAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YTLVQCQ-ALVLAPT 58

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D +R + 
Sbjct: 59  RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQS 118

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + + +   
Sbjct: 119 LRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNK 178

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
            VR+ +  +      I    V V   + +   + ++        +++F +TR  V   T 
Sbjct: 179 PVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTD 238

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI+ +L 
Sbjct: 239 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLP 298

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV V  E  PS
Sbjct: 299 TQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVV--EELPS 348


>gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 407

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 181/343 (52%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L++ G+V  T VQ   +   L   D++V A TG+GKT AF L + + LLA+
Sbjct: 7   TLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPILARLLAD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   AP AL + PTREL  QV    + L   + V +A   GGV +  +   ++ G 
Sbjct: 67  EVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLNAIKGGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH++ + L I  +  +V DEAD MLD+GF D+I  ++    K R+  +F
Sbjct: 127 DLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKTRQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  LAK+       + IA+       I+ +   +    +   I ++L  +   
Sbjct: 187 SATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLLGKNSWS 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    + T  L E     VA+  +LSQ++R   L   +   ARV +ATDVAA
Sbjct: 247 QVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+  L  +I+ EL    E+ +HR GRTGRAG  G+++ ++
Sbjct: 307 RGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLL 349


>gi|124267364|ref|YP_001021368.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
 gi|124260139|gb|ABM95133.1| ATP-independent RNA helicase [Methylibium petroleiphilum PM1]
          Length = 473

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 183/332 (55%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY ++T VQ A L   L  +D++  A+TGSGKT AF  ALA     +  R    S 
Sbjct: 31  LEQLGYHSMTPVQAATLPIALAGRDLIAQAKTGSGKTAAF--ALALLARLDPRRLDVQS- 87

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV +EL  L  ++    +    GG ++  +   LQ+GAHIVVGTPG
Sbjct: 88  ---LVLCPTRELADQVTQELRRLARSQENTKILTLCGGATMRPQLASLQHGAHIVVGTPG 144

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH+    L ++ L  +VLDEAD MLD+GF DDI  +    P +R+ L+FSAT    I
Sbjct: 145 RIIDHLERGSLALASLNTLVLDEADRMLDMGFFDDIAAVARHCPPQRQTLLFSATYPDGI 204

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+  + +    V + S+ +    I  R   V    R +A+  +L +    + + FC+T
Sbjct: 205 ARLSAQFLRQPEHVRLESQ-QDAGKIRQRFYEVTEEQRLHAVGLLLDHFRPASTLAFCNT 263

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +        VL+    Q +AL G+L Q+ER   L    +    V +ATDVAARG+D+  L
Sbjct: 264 KQQCRDLVAVLSAQGVQALALHGDLEQRERDQVLMQFANRSCSVLVATDVAARGLDVEQL 323

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           E V++ ++S +PE  +HR GRTGRA + G ++
Sbjct: 324 EAVVNVDISPDPEVHIHRIGRTGRADQAGWAL 355


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 202/380 (53%), Gaps = 23/380 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +G+AL+E      YV  T +Q   +   +  +D++  AQTGSGKT AF   + S +L   
Sbjct: 182 LGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGILKSP 241

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +  R +  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  +  + R+L
Sbjct: 242 KPHQRSRSTRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPITNQLREL 301

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I++    P++
Sbjct: 302 ERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEGMDMPQR 361

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ ++FSAT    I  +A ++  D + + +         I  R   V  SD+ + +++
Sbjct: 362 GERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSYLMD 421

Query: 238 ILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           ++    A          +VF  T+         L  + F   ++ G+ +QQER +AL+  
Sbjct: 422 LIHAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQEREHALRSF 481

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     +
Sbjct: 482 KSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 541

Query: 351 N---MQRRAERLFREANVSV 367
           +   + R    L +EAN  V
Sbjct: 542 SNTTLARPLSDLMKEANQEV 561


>gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116]
 gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQV  E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVT-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  +   L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ RDL  G+ 
Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 IVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRD--NAIVNILRYH 242
           AT    +  LA +Y  D ++V + S   +  H+      V+     RD  N  +      
Sbjct: 299 ATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR+ + +ATD
Sbjct: 359 NEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--RL 359
           VAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++ F   QN    A+   +
Sbjct: 419 VAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISI 478

Query: 360 FREANVSV 367
            REAN ++
Sbjct: 479 MREANQNI 486


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 183/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+  R  
Sbjct: 12  ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 71  -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ ++LDEAD MLD+GF  DI  IL   P KR+ L+FSAT 
Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + + +++   N     ++       +  +   +  +++    +  +V
Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWQQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  +L  +            L
Sbjct: 49  GFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQSLDTQ------VRETQVL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 103 VLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 163 IKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTS 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 223 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER N ++  R G +RV I TDV ARGID+  + LVI
Sbjct: 283 DWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVLITTDVWARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+S+
Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVSI 370


>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 422

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 186/350 (53%), Gaps = 5/350 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L     + +
Sbjct: 12  ILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPILEIL--SKKKPT 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++    L + PTRELA+QV   +        +  +V  GGV ++ + + L +G  I+V 
Sbjct: 70  KSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRLCSGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ VV DEAD MLD+GF +DI+ IL   P K++ LMFSAT S
Sbjct: 130 TPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQTLMFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I TLAK+   + V +++   N     I      V  S +   + ++++ H     +VF
Sbjct: 190 NKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHLIQEHNWHQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R    L +   +  A+    SQ  R+ AL   ++    V +ATD+AARGI++
Sbjct: 250 SRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVLVATDIAARGIEI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
             L  VI+ +L   PE+ +HR GRTGRAG KG ++ ++  +    A++LF
Sbjct: 310 NQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSAD---EAKQLF 356


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 186/334 (55%), Gaps = 9/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76
           Y   T VQ+  +   +  +D++  AQTGSGKT AF L + + ++        FS    P 
Sbjct: 330 YEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLPVLTGMMKNGISGSSFSEVQEPQ 389

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL +APTRELAVQ+  +       T +   V  GG SV  + R ++ G HI+VGTPGRL 
Sbjct: 390 ALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVGYQLRQVEQGTHILVGTPGRLI 449

Query: 137 DHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191
           D I GKG +++S LK ++LDEAD MLD+GF  DI  +   L + PK +R+ LMFSAT   
Sbjct: 450 DII-GKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEELGTPPKTERQTLMFSATFPE 508

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A ++  D + + +       +D+      V   ++ + + +IL   G++  +VF 
Sbjct: 509 EIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEKRSRLCDILTETGSEKTLVFV 568

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + +       L+++ F   ++ G+  Q ER  AL+  + G+A V IAT VAARG+D+P
Sbjct: 569 EQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFKLGKAPVLIATSVAARGLDIP 628

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++ VI+ +L  + +  +HR GRTGR G  G ++
Sbjct: 629 LVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKAI 662


>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
 gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
          Length = 465

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 182/342 (53%), Gaps = 2/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERL--ST 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL +APTRELA+QV   +E     + V   V  GGV ++ + + L+ G  
Sbjct: 66  GPKAKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR+ LMFS
Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++A++N     +      V    +   + +++R +  + 
Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKTALLSHLIRSNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +ATD+ AR
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFV 347


>gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
 gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
          Length = 433

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 189/342 (55%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65
           PQ I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +E
Sbjct: 18  PQ-ITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTSE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
 gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
          Length = 431

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 192/352 (54%), Gaps = 13/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY   T +Q   +   L  +D++  AQTG+GKT AF L +   L+AE
Sbjct: 7   NLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPIIHQLMAE 66

Query: 66  NDRFSPASAPLA------LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               + A+ P A      L + PTREL+ QV +        + +   +  GGVS++ + +
Sbjct: 67  Q-LTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSINPQVK 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA I+V TPGRL D +  + L +  ++ +V DEAD MLD+GF ++I  IL   PKK
Sbjct: 126 ALVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILKHLPKK 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT   AI  L+K+   D + V + + N     ++ + V    +DR   + + L
Sbjct: 186 RQTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVE-QIVYAVDNDRKRELTSYL 244

Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              G++N    ++F  T+       K + +   + +A+ G+ SQ  R   L+  ++G+ R
Sbjct: 245 --IGSRNWHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFKNGKVR 302

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +ATDVAARG+D+  L+ VI+ EL    E+ +HR GRTGRAG  G +  ++
Sbjct: 303 ALVATDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLV 354


>gi|212722850|ref|NP_001131651.1| hypothetical protein LOC100193011 [Zea mays]
 gi|194692160|gb|ACF80164.1| unknown [Zea mays]
          Length = 455

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 186/339 (54%), Gaps = 4/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L +   LL+        
Sbjct: 37  EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++   +    HIVVGTP
Sbjct: 94  QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  +K +VLDEAD++L++ F   ++ IL   PK RR  +FSAT++ 
Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTFLFSATMTK 213

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++  +V ++S+      +      V   D+D  ++++L        ++F 
Sbjct: 214 KVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNERLESMIMIFV 273

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S      +L     + +++SG++SQ +R  AL   +     + I TDVA+RG+D+ 
Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q
Sbjct: 334 GVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQ 372


>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 412

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 198/352 (56%), Gaps = 14/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA---ST 61
           N P  +  A+    +   T +Q   + P ++E KD+L  +QTG+GKT+AF   L    +T
Sbjct: 7   NFPDYLSRAVDNLNFSEATDIQAKAI-PLIQEGKDLLAESQTGTGKTLAFSFPLIERINT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRER 118
           L  +  + S     L L + PTRELA+QV +     YA+     +  A  IGG ++  + 
Sbjct: 66  LPPKKKKISI----LGLVLVPTRELALQVEKAFTN-YAEFSLRPIKTATLIGGENIDGQI 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +++ TPGR+ + I    + +  L+ ++LDEAD+MLDLGF D+++ +L++ PK
Sbjct: 121 RKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEALPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   +  LA+ +   AV + I+ +     +I+ R + V  + R   +  +
Sbjct: 181 KRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQVLQKL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +    K+ I+F S++ S       L +   Q     G+L+Q ER   L+  ++    + 
Sbjct: 241 FKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDFPIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           IATD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG+KG+++ F+ P
Sbjct: 301 IATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAISFINP 352


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 12/336 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T++Q A        +DV+  A+TGSGKT+ FGL     L     +  P   P A+ 
Sbjct: 98  FTSPTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYK-PTAVM 156

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I+PTRELA+Q+  ++        + VA   GGV    +R  L+  A IVV TPGRL D  
Sbjct: 157 ISPTRELAMQIHDQISKFAELVDIKVACIFGGVKKEEQREALKTAA-IVVATPGRLKDLQ 215

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198
               +++  +K +VLDEAD MLD GF  DI+ I+   P  KR+ +MF+AT  P +  LA 
Sbjct: 216 NDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTVMFTATWPPVVRDLAA 275

Query: 199 NYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IV 249
            +    V V I  E     R ++ I     +V   +++  +V +L +Y    ++    +V
Sbjct: 276 TFMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKEQRLVQLLNKYQKGPSSSDKILV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC  +    R  ++L    F+V  + G+L QQER  +L+  + G + V +ATDVAARG+D
Sbjct: 336 FCLYKKEAVRVERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLD 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P ++LVI+       E+ +HR GRTGRAG +G ++
Sbjct: 396 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 431


>gi|77360375|ref|YP_339950.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 440

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 208/405 (51%), Gaps = 39/405 (9%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPA- 192
           L DH+  + L +S L+ ++ DEAD +LDLGF + ++ I D +  + R+ L+FSAT+  A 
Sbjct: 134 LADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADHRLRQTLLFSATLDHAQ 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           +  L++N  K   ++ +++ N QHSDI     L    D   A++ + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQSLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+   L+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++ P++                 W 
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKD-----------------W- 355

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQG--------DEKKMVDVL 407
             PS  AI+       L D L  DS+ G         EKK V VL
Sbjct: 356 --PSYLAIKA-----FLNDELKFDSVDGLKAKFKGIKEKKPVAVL 393


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 190/356 (53%), Gaps = 18/356 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I  +I + L   GY   T +Q A +   L  +D++  A+TGSGKT+AF +   + +L +
Sbjct: 134 QISPLILQQLEALGYTEPTPIQRAAVPNGLTGRDLVGIAETGSGKTLAFLIPSVNYIL-Q 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  L + PTRELA+Q+ RE    +A  G  V   IGG S       L+ G 
Sbjct: 193 LPRLGRFEGPYVLILVPTRELALQIEREFS-KFASLGFDVISLIGGHSYDEHAEKLERGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            +++ TPGRL D +  + +++     +V+DEAD M+D+GF +D+  IL+S P        
Sbjct: 252 EVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSENPHY 311

Query: 178 -----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-- 230
                 KR  +MF+AT+ P I  ++  Y K+   V +         +   A+ V  SD  
Sbjct: 312 LGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDEK 371

Query: 231 RDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           R   +  +L R   +   I+F + R +     + L +  F  V + G  +Q++R  A+Q 
Sbjct: 372 RLQMLQKVLTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREYAIQQ 431

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +++GR+ + +ATDVA RGID+PD+ LV++ +++ N E+  HR GRTGRAG++G ++
Sbjct: 432 IKEGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRIGRTGRAGKEGTAI 487


>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
 gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 412

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 185/336 (55%), Gaps = 3/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   TS+Q+ ++   +  KD+L SA TG+GKT AF L +   LL +  R  P S
Sbjct: 14  AVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQFLL-DYPRRHPGS 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L + PTRELA QV  +   L   T +V  V  GG++   +R   +    I+V TPG
Sbjct: 73  TRI-LILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDTFEKNLDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  +++ ++FSAT+    
Sbjct: 132 RLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRKQSMLFSATLEGTG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I+  AK+   D V +  AS  ++   I     +   +    A++  +  H  ++A+VF  
Sbjct: 192 ISRFAKDILNDPVELEAASSRKEQGKIHQWLHIADDAKHKYALLKHILTHQVESAVVFVK 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++   ++L    F V  L GE+ Q +R+ ++   R G  ++ IATDVAARGID+  
Sbjct: 252 TRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILIATDVAARGIDVES 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  VI+ ++    +  +HR GRTGRAG KG ++ ++
Sbjct: 312 ISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLV 347


>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 621

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 29/361 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+E G     ++QE  L   L  +D++  A+TG+GKT+ FG+ L   ++   +
Sbjct: 106 PEIV-SALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQRIVPPAE 164

Query: 68  RFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           R  PA+             P AL + PTREL VQV ++L       G+ V    GG +  
Sbjct: 165 R--PAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYGGRAYE 222

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D    + L +  +  +VLDEADEMLDLGF  D+E IL  
Sbjct: 223 PQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVERILRM 282

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVA 227
            P++R+ ++FSAT+   I  L++ +      +        +I    +QH    YRA  + 
Sbjct: 283 LPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHV---YRAHAM- 338

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  +L+       ++F  T+ +V R    LAE  F   A+ G+L Q  R  AL
Sbjct: 339 --DKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQAL 396

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG++G++V +
Sbjct: 397 RAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAVTL 456

Query: 348 I 348
           +
Sbjct: 457 V 457


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 182/337 (54%), Gaps = 15/337 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+A         
Sbjct: 210 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAAGSFGRTRK 269

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 270 AYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATP 329

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++       + R+ LMFSAT
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD V +++        +I  +   V   D+ + +++IL  HGA   +
Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTL 449

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT VAARG+
Sbjct: 450 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 509

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P+++ V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 510 DIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546


>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
 gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
          Length = 456

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 185/339 (54%), Gaps = 7/339 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AENDRFS-PA 72
           G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +   LL     +E  +   P 
Sbjct: 28  GWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPD 87

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  A  ++PTRELA+Q+  + E L A   +  AV +GG+   ++   L    H++V TP
Sbjct: 88  PAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATP 147

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  LK +VLDEAD +L+  F   +  IL+  P +R   +FSAT++ 
Sbjct: 148 GRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERETFLFSATMTK 207

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++ V++  AS+      +  +   VA   +D  +V IL       +++F 
Sbjct: 208 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 267

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T         VL    F+ + +SG+++Q +R  AL   + G   + + TDVA+RG+D+P
Sbjct: 268 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 327

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q
Sbjct: 328 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 188/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 366 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 424

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 425 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 484

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P+K  R  
Sbjct: 485 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPQKGVRHT 544

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 545 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 604

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 605 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 664

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 665 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 708


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + +  +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 184/336 (54%), Gaps = 11/336 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T +Q A        +DV+  A+TGSGKT+AFGL     +L         + P A+ 
Sbjct: 105 FSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI 164

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I+PTRELA+Q+  +L    A   + V    GGV    +R  L+  A IVV TPGRL D  
Sbjct: 165 ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLQ 223

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198
               +++  +K +VLDEAD MLD GF  DI+ I+ S P  KR+ +MF+AT  P++  LA 
Sbjct: 224 NDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMPDSKRQTVMFTATWPPSVRDLAA 283

Query: 199 NYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAIV 249
            +   AV V I    +++ R ++ I     +V   +++  +V +L     GA      +V
Sbjct: 284 TFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLNRSQRGAAVCDKVLV 343

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC  +    R  ++L    F+V  + G+L+Q ER  +L+  + G A V +ATDVAARG+D
Sbjct: 344 FCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEAFKTGAATVLVATDVAARGLD 403

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P ++LVI+       E+ +HR GRTGRAG  G ++
Sbjct: 404 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439


>gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
 gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
          Length = 428

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 7/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+   L   G+   TS+Q   L   L+  D+   AQTG GKT+AF   LA+T      
Sbjct: 18  PQVV-TGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAF---LAATFHHLLQ 73

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +P  + P AL +APTRELA+Q+ R+   +   TG+ + V  GG     +R +L+ G  
Sbjct: 74  KEAPTHNQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEAGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+++    N+ +++ +VLDEAD M DLGF  DI ++ D  P   +R  ++
Sbjct: 134 ILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA ++  D   V +  E + +S I       +  D+   +  ++     
Sbjct: 194 FSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNEDKMTLLQTLIEEDWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +T+    +    L     +V  L+G++ Q++R   L+   DG   + +ATDVA
Sbjct: 254 EKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + ++ +HR GRTGRAG  G ++
Sbjct: 314 ARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAI 354


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P +++K D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 248 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 306

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 307 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 366

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ 
Sbjct: 367 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 426

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++ ++ + + +        +I  + V V  SD+ + ++++L   
Sbjct: 427 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 486

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR+ + +AT
Sbjct: 487 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 546

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 547 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 594

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 595 ERNINIT 601


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 3/341 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L + STL     R     
Sbjct: 68  AVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPILSTL-PRGKRGK--R 124

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L ++PTRELA Q+ +    +  KTG  V    GG     +  +++ G  +++ TPG
Sbjct: 125 APRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQINEIRRGTDVLIATPG 184

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P  R+ L+FSATI  +I
Sbjct: 185 RLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPADRQTLLFSATIDHSI 244

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +   D   V IA        ++   + +A   +   +  +L   G+   IVF  T
Sbjct: 245 QKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQALLEEKGSDRVIVFART 304

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       + L +  ++  ++  + SQ +R  AL   R GR  + +ATDV ARGID+PD+
Sbjct: 305 KNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDV 364

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R
Sbjct: 365 DHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRR 405


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 194/352 (55%), Gaps = 15/352 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL +  Y  +  +QE ++   L+ +DV+V ++TGSGKT +F + +   L+ E     
Sbjct: 12  ILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIVQELIWEE---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P A+ + PTRELA+Q+  + + + A   +      G      + +DL+  AH+VVG
Sbjct: 68  --REPQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQDLKQRAHVVVG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+  + L   H++ V++DEADEML++GF + ++ I +  P  +   +FSAT+ 
Sbjct: 126 TPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNKITCLFSATMP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+ + K+   + ++ E   ++ I + A  V    + + +  +L      + I+F
Sbjct: 186 QPIQELAEGFMKEPKLITLSEETTVNAAITHYAYEVKEKQKLSFLKQLLCKEQPASCIIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
             T+  V    K + E L+     V  L G + Q++R   ++  + G+ R+ +ATDVAAR
Sbjct: 246 ARTQEGV----KTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRILVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           GID+ D+  +I+ ++ +  E  LHR GRTGR    G+++ F+   + +R+AE
Sbjct: 302 GIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYDGERKAE 353


>gi|289663805|ref|ZP_06485386.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 430

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 188/347 (54%), Gaps = 11/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L      +    +P  
Sbjct: 19  ALARAGVRTLTPIQVAMIPPMLAGRDLIATAQTGSGKTLAYALPLL-----QQRVQAPEQ 73

Query: 74  APLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
           AP  L    + PTREL  QV + L  L A     + +    GG +++ +   L+ GA IV
Sbjct: 74  APRVLGGLILVPTRELVAQVAQTLLPLAAALPRRLKIVAATGGEAINPQLMALRGGADIV 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +    L ++ +  ++LDEAD +LDLGF  +++ I    P +R+ ++ SAT
Sbjct: 134 IATPGRLLDLVAHNALRLAQVSTLLLDEADRLLDLGFGAELDRIFGLLPAQRQSVLVSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PA+  LAK   +D +R+ I     Q   I  RA+ V    R   + ++L  H     +
Sbjct: 194 FPPAMAALAKWRLRDPLRITIEGTPEQAPAITQRAIAVDAGQRTQLLRHLLLEHAWPQLL 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++R +  +  + L++   + + L GELSQ  R  AL+  +    +V +ATD+A RGI
Sbjct: 254 VFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERALRAFKQAEVQVLVATDLAGRGI 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           D+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 314 DIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 188/348 (54%), Gaps = 10/348 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A  +  S  
Sbjct: 38  EALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLERVFAPGE-GSGD 96

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL +QV +++       GV V    GGV+   +   L+ G  I+VGTP
Sbjct: 97  GLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEALRKGVEILVGTP 156

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  + K L ++ ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT+   
Sbjct: 157 GRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQTMLFSATMPDP 216

Query: 193 ITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           I TL++ + +  + ++         + Q   + YR   +   ++   +  IL+       
Sbjct: 217 IVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSM---NKVEIVARILQAESRGLT 273

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAARG
Sbjct: 274 MIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARG 333

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           ID+  +  VI+ +   + +   HR GRTGRAG  G++V FV   +M R
Sbjct: 334 IDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPR 381


>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 731

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 182/356 (51%), Gaps = 27/356 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L +    LA   R  P 
Sbjct: 324 KAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM----LAYISRLPPM 379

Query: 73  S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           S       P A+ +APTRELA Q+  E        G  V   +GG S+  +   +  G  
Sbjct: 380 SEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCE 439

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------- 179
           IV+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P         
Sbjct: 440 IVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 499

Query: 180 ----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                     R   MFSAT+ P +  LA+ Y ++ V V I +  +    I    +++  S
Sbjct: 500 EEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKES 559

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  SQ++R  +L+ 
Sbjct: 560 EKFFRLQKLLDELGDKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEG 619

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            R  R  V +ATDV  RGID+PD+  VI+ ++  + E   HR GRTGRAG+ G++ 
Sbjct: 620 FRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVAT 675


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 192/341 (56%), Gaps = 5/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA++   Y  +T VQ   +   L  +D+ V+++TGSGKT+A+ L L   LL    R  
Sbjct: 12  LKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLMHRLL--TSRAL 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL +APTRELA QV  +L +L A T V  ++ +GG + + + + L+    I+V 
Sbjct: 70  STRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKALRKTPEILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189
           TPGRL +H+  +      ++ +VLDEAD MLDLGF D ++ I  ++  + R+  +FSAT+
Sbjct: 130 TPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLRQTWLFSATL 189

Query: 190 S-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
           +  ++  L+    K    ++I   +  H+DI+    L    D   A++ ++L     + A
Sbjct: 190 NNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHLLSQPDYQQA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +TR    R  K  +E     +ALSG++ Q +R+  +     G A+V   TDVAARG
Sbjct: 250 IVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVLFTTDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +DL  + LV++ ++   PE  +HR GRTGRAG +G +V +I
Sbjct: 310 LDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLI 350


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 179/333 (53%), Gaps = 7/333 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   +++Q+  + P +  +DV+  AQ+G+GKT    LAL   L   +       
Sbjct: 45  GLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQMLDTTSREVQ--- 101

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELAVQ  +    L     V V  CIGG S+  + R L  G HIV GTPG
Sbjct: 102 ---GLVLSPTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRKLDYGCHIVSGTPG 158

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P + ++++ SAT+   +
Sbjct: 159 RVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEV 218

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             +   +  D +R+ +  +      I    V V   + + + + ++        A++FC+
Sbjct: 219 LEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 278

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ + ++ F V A+ G++ Q+ER   +   R G  RV I TDV ARGID+  
Sbjct: 279 TKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDVWARGIDVQQ 338

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LVI+ +L  N EN +HR GR+GR GRKG+++
Sbjct: 339 VSLVINYDLPGNRENYIHRIGRSGRYGRKGVAI 371


>gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 427

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 193/377 (51%), Gaps = 4/377 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L         A  
Sbjct: 24  LTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAEKSAGQ 83

Query: 75  PLALAIAPTRELAVQVGRE-LEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L + PTRELA QV    L +     G + +    GGVSV+ + + L+ GA ++V TP
Sbjct: 84  VRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVATP 143

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SAT    
Sbjct: 144 GRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSATFPEE 203

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L        +  ++ SE  Q S I+ R + V    +   + ++++ H    A++F S
Sbjct: 204 VRALTAKLLHQPLEYHLQSE--QESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVS 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARGID+  
Sbjct: 262 AKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGDISVLIATDIAARGIDIDK 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +  E  
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKLEREQV 381

Query: 373 PSVEAIRERDAQRILQD 389
           P  EA  E   + + Q+
Sbjct: 382 PGFEANAEMPLEVLAQE 398


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 194/357 (54%), Gaps = 18/357 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   +  +D+L  AQTG+GKT AF L +   L A+     P  
Sbjct: 15  AVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPILQRLDAD-----PPD 69

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P   AL ++PTRELA Q+G  +        +   V  GGV    +  +L+ G  ++V T
Sbjct: 70  EPRIRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAELRRGVDVLVAT 129

Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGRL D + G+G +++  ++  VLDEAD+MLD+GF  DI  I+ + P KR+ L FSAT+ 
Sbjct: 130 PGRLLD-LMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKRQTLFFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNAIV 249
            AI  LA     D V V +A  + + +D+D R   V   ++   +V++LR       ++V
Sbjct: 189 SAIKELAATLLDDPVEVAVARVS-EPADVDQRLYFVDKGNKRKLLVDLLRADPSVSRSLV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R  K L+       A+ G  SQ  R+ AL+  + G  RV +ATD+AARG+D
Sbjct: 248 FSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLVATDIAARGLD 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----ERLFR 361
           +  +  VI+ +L + PE  +HR GRT RAG  G+++     +++ RA     ERL R
Sbjct: 308 ISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFC--DVEERAYLVDIERLLR 362


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70
           +AL+   + + T +Q   L P L   D+   AQTG+GKT+AF +A    LL  AEN   S
Sbjct: 21  DALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAFLVATFHYLLSKAENADNS 80

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            ++ P A+ +APTRELAVQ+  + + L   TG+ + +  GG     +R  L+ G  I++G
Sbjct: 81  KSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGEGYQSQRETLEEGVDIIIG 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSAT 188
           T GR+ D+ +    ++ +++  VLDEAD M DLGF  DI F+    P   +R  ++FSAT
Sbjct: 141 TTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIRFLFRRMPPAGERLSMLFSAT 200

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LA  +  +   V +A E    + +       +  D+   ++ +L     + AI
Sbjct: 201 LSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLTLLEEEWPEKAI 260

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ S  + T  L     +V  LSG++ Q++R   L+    G+  V +ATDVAARG+
Sbjct: 261 VFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDVLVATDVAARGL 320

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  +  V + +L  + E+ +HR GRTGRAG+ G+++
Sbjct: 321 HIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAI 357


>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
 gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
          Length = 461

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 180/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E  Y   T VQ   +   L  KDVL +AQTG+GKT  F L L   L+ +    S   A
Sbjct: 16  LRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLLQRLVQQGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          + +    GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT    I 
Sbjct: 135 LLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRRQTLLFSATFPDEIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A     + V++++++ N   S +    V V   ++    +++L  HG ++A+VF  TR
Sbjct: 195 AMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLAEHGWQHALVFARTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           A V      L      V  + G+  Q  R  AL+  + G  R+ +ATDVAARG+D+ DL 
Sbjct: 255 AGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P +++K D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 244 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 302

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 303 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 362

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ 
Sbjct: 363 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 422

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++ ++ + + +        +I  + V V  SD+ + ++++L   
Sbjct: 423 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 482

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR+ + +AT
Sbjct: 483 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 542

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 543 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 590

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 591 ERNINIT 597


>gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
 gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
          Length = 453

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 199/372 (53%), Gaps = 14/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSP 71
           +A+ + GY   T +Q+  +   +   D+L  AQTG+GKT  F L +   L+A    + + 
Sbjct: 14  QAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPMLHRLMARPAVKDAR 73

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +P+ AL + PTRELA QV   +        +   V  GGV +  +   L+ G  I+V 
Sbjct: 74  GKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQIDRLKRGVDILVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH + + L++SH++  VLDEAD MLD+GF  DI+ +L   PK+++ L+FSAT S
Sbjct: 134 TPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVPKQKQSLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAKNA 247
             I TLA         + +A   R++S ++  A  +   DRD     + ++++       
Sbjct: 194 DEIKTLADRLLNSPQVIEVA---RRNSTVETIAQKIHPVDRDKKKELLAHLIKSQDWHQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC  +   +R T+ L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AARG
Sbjct: 251 LVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGALQVLVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA- 363
           ID+  L  V++ EL +  E+ +HR GRTGRAG  G +V ++        R  E+L + + 
Sbjct: 311 IDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDGFLRDIEKLIKRSI 370

Query: 364 --NVSVVWEPAP 373
              V   +EP P
Sbjct: 371 PREVVPGFEPDP 382


>gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23
 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis
           thaliana]
 gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana]
          Length = 414

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D  S      AL
Sbjct: 60  GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV    C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +    +R    + R  NV V  E  PS
Sbjct: 354 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVV--EELPS 408


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 183/334 (54%), Gaps = 9/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76
           Y   T VQ+  +   +  +D++  AQTGSGKT AF L + + ++        FS    P 
Sbjct: 318 YDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLTGMMNNGLTGSSFSVVQEPQ 377

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL +APTRELAVQ+  + +     T +   V  GG S+  + R+++ GAHIVVGTPGRL 
Sbjct: 378 ALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLGHQLRNVEQGAHIVVGTPGRLI 437

Query: 137 DHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISP 191
           D I GKG +++  LK ++LDEAD MLD+GF  +I+ I   L + PK +R+ LMFSAT   
Sbjct: 438 DVI-GKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHELGAPPKEQRQTLMFSATFPE 496

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  +  D + + +       +D+      V    +   + +IL   G    +VF 
Sbjct: 497 EIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPRDQKRQKLCDILSESGTDKTLVFV 556

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + +       L++  F   ++ G+  QQER  AL+  + GRA + +AT VAARG+D+P
Sbjct: 557 EQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFKTGRAPILVATSVAARGLDIP 616

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++ VI+ +L  + +  +HR GRTGR G  G S 
Sbjct: 617 LVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKST 650


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +    L   
Sbjct: 215 FPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 274

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCI-GGVSVHRER 118
            R  + P   P  L + P+RELA Q      +   K        +  VCI GG S   + 
Sbjct: 275 IRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGCSAVEQA 334

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++++ G H +V TPGRL D +  + L +   + +  DEAD M+D+GF +++  +LDS   
Sbjct: 335 KEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 394

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   ++   +++ 
Sbjct: 395 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 454

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   A   ++FC  +  V    + L        A+ G L+Q+ERS A++  R+GR  V 
Sbjct: 455 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVL 513

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +N +
Sbjct: 514 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 568


>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 479

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 175/337 (51%), Gaps = 9/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+++G+   T +Q   +   L  +D++  AQTG+GKT AF L +   L+       P 
Sbjct: 15  DTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHALITH-----PT 69

Query: 73  SAPLA----LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            AP      L ++PTRELA Q+      L     + VAV  GGVS   + + LQ G  I+
Sbjct: 70  PAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQIKALQRGLDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI     ++   +  VLDE D+MLDLGF   I  I+ + P KR+ L FSAT
Sbjct: 130 VATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPAKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA +  KD V V++    +    +  + V V    + + ++ +         I
Sbjct: 190 MPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIELFGDAMMTRTI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    + T+ L +      A+ G  SQ +R  +L   R G  R  +ATD+AARGI
Sbjct: 250 VFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRALVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL   PE+ +HR GRT RAG +G+++
Sbjct: 310 DIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAI 346


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 52  DMPKELITELTQQGVTVPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L     + G+  A  +GG+S++R+   L+NG+
Sbjct: 112 --RAEPRR-PLALVLVPTRELAQQVTEALTPYARRLGLRAATVVGGMSINRQADALRNGS 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P   + L+F
Sbjct: 169 EVVIATPGRLYDLIERGDCRLDQVRTTVLDEADQMADMGFLPQVTRLLRQVPADGQRLLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+ L + +  D    ++       + +++  + +A +D+ + +  +    G  
Sbjct: 229 SATLDHDISKLTRQFLDDPAVHSVDPSAGAVTTMEHHVLHIADTDKRSVVTRVAARDG-- 286

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G     +AT+VAA
Sbjct: 287 RVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTALVATNVAA 346

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  + ++  + +R   RL  +A +
Sbjct: 347 RGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGSVITLVTPDQRREMGRLMADAGI 406

Query: 366 S 366
           +
Sbjct: 407 T 407


>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 457

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A         
Sbjct: 15  AVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQKLSATATPIRGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   + +A  N     +  +   V    +   +  ++     +  +VF  T
Sbjct: 195 KGLAEKLLTNPEMIEVARRNTASEQVAQQVAFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLF-REANVSVV- 368
             V++ EL +  E+ +HR GRTGRA   G++   V V    + R  ERL  RE     V 
Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAVE 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 151 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 209

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 210 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 269

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 270 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 329

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 330 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 389

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 390 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 449

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            V+ARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 450 AVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 497

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 498 ERNINIT 504


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 195/367 (53%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P +++K D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 241 YTRPTPVQKYAI-PIIKDKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGDALRAMKENG 299

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 300 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGADIGQQIRDLERGCH 359

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ 
Sbjct: 360 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEKDTMPPKGVRQT 419

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++ ++ + + +        +I  + V V  SD+ + ++++L   
Sbjct: 420 MMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQKVVWVEDSDKRSFLLDLLDAT 479

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR+ + +AT
Sbjct: 480 GKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQRDREEALHQFRSGRSPILVAT 539

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 540 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 587

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 588 ERNINIT 594


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 186/338 (55%), Gaps = 7/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   ++ +  +  
Sbjct: 12  IVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPIIQQIV-DTPKAR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL +APTREL  Q+   +E       V VA   GG  +  + R L+ G  I+V 
Sbjct: 71  TRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERKLEAGVDILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL +H+    + +++L+ +V DEAD MLD+GF   I  I+ S   + + ++FSAT S
Sbjct: 131 TPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQPQTMLFSATSS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
           P +  LA++  +   R+ + +EN   S  D  A +V   D D  +  +    G KN    
Sbjct: 191 PQMNALAQDLLRKPKRIIVNAEN---STADTVAHVVYPVDEDRKLELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +AT+VAARG
Sbjct: 248 LVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARVMVATEVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  L  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 308 LDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAV 345


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/380 (32%), Positives = 201/380 (52%), Gaps = 23/380 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +GEAL++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++  +
Sbjct: 160 LGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGQ 219

Query: 66  NDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +  P  A    PLAL ++PTREL+ Q+  E +    +TGV V V  GG  + ++ RDL
Sbjct: 220 ASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPISQQLRDL 279

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK 178
           + G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+
Sbjct: 280 ERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPQ 339

Query: 179 K-RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ ++FSAT    I  LA ++  + V + +         I  R   V  +D+ + +++
Sbjct: 340 GVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDTDKRSHLMD 399

Query: 238 ILR------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +L        HG +   +VF  T+         L  + F    + G+ +QQER  AL+  
Sbjct: 400 LLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREQALRSF 459

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++      
Sbjct: 460 KSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFND 519

Query: 351 N---MQRRAERLFREANVSV 367
           N   + +    L +EAN  V
Sbjct: 520 NNSSLAKALSELMQEANQEV 539


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 189/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +  +   V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  +  R    + +  NV+V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQKFYNVTV--EELPS 407


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D + + +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 231 KFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G + Q+ER + ++  R G +RV I+TD+ ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVLISTDIWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40]
 gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3
 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/332 (36%), Positives = 180/332 (54%), Gaps = 11/332 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TS+Q A        +DV+  A+TGSGKT+AFGL     +            PLA+ I+PT
Sbjct: 104 TSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPT 163

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +L       GV VA   GGV    +R  L+  A +VV TPGRL D      
Sbjct: 164 RELAMQIYDQLLKFSGSVGVRVACVFGGVRKEEQREALKT-AGVVVATPGRLKDLQNDGS 222

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQK 202
           +++  +K +VLDEAD MLD GF  DI+ I+   P  KR+ +MF+AT  P++  LA  +  
Sbjct: 223 VDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMS 282

Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAIVFCST 253
             V V I    +++ R ++ I     +V   ++++ +V +L          +  + FC  
Sbjct: 283 SPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLY 342

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  ++L    F+V  + G+LSQQER  +L   + G A V +ATDVAARG+D+P +
Sbjct: 343 KKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSV 402

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + VI+       E+ +HR GRTGRAG +G +V
Sbjct: 403 KQVINVTFPLTVEDYVHRIGRTGRAGAEGHAV 434


>gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50]
 gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 462

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L  + +R     AP AL
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ D
Sbjct: 77  VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L+
Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   + + +++   S I+     +    R +A+  +L +    + + FC+T+   
Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRS 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  VI
Sbjct: 256 HDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373
           + +++ + E  +HR GR+GR  +KG+++    P+ M        R AN+   ++ AP   
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367

Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401
             + ++R + + R L+ P+    IQG +K
Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 184/335 (54%), Gaps = 11/335 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + + G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +           
Sbjct: 53  GIYDYGFEKPSAIQQRAVIPIITGRDVIAQAQSGTGKTSMISLSVCQVIETNVHEVQ--- 109

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELA Q  R ++ + +   V V  C+GG S+  + R L++G H+V GTPG
Sbjct: 110 ---ALILSPTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLESGVHVVSGTPG 166

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+CD I+ + L    +K +VLDEADEML  GF+D I  +    P + ++++ SAT+   I
Sbjct: 167 RVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDI 226

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVF 250
             +   +  D VR+ +  +      I  +   VA+   +   + + ++        A++F
Sbjct: 227 LEITSKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 284

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+
Sbjct: 285 CNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLITTDVWARGLDV 344

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 379


>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 441

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 192/343 (55%), Gaps = 13/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E  +   T +Q   +   +  +D++  A TGSGKT+AF + +   L      +   
Sbjct: 17  QALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPILHRLWDNPQGY--- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS--VHRERRDLQNGAHIVVG 130
               A  ++PTRELA Q+  + E L A  GV   V +GG    V +  R L    HI+V 
Sbjct: 74  ---FACVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQAVR-LAQKPHIIVA 129

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH++  KG ++  LK +VLDEAD +LDL F+ +I  I+ S PK+R   +FSAT+
Sbjct: 130 TPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIPKERCTYLFSATM 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +  ++ L +    D VRV+ AS  R    S +    +L  L +++  +V ++        
Sbjct: 190 TANVSKLQRASLSDPVRVD-ASLFRYTTVSTLVQHYLLCPLVEKEVTLVYLINSLVQNLI 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T A   R + +L    F  V L GEL+Q +R  A    + G++++ +ATDVA+RG
Sbjct: 249 IVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSKILVATDVASRG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P++++VI+ +  ++ ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 309 LDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQ 351


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 19/357 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + Q I + ++  GY   T +Q   +   L  +D+L  A+TGSGKT AF + +   
Sbjct: 123 FEDMCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPMIQH 182

Query: 62  LLAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117
            LA+    SP      PLAL +APTRELA Q+ +E++    +      A+ +GG ++  +
Sbjct: 183 CLAQ----SPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQ 238

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  I+V TPGR  DH++    ++S +  +VLDEAD MLD+GF   I  +L + P
Sbjct: 239 RSELRAGVDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLP 298

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++ + L+FSAT+   I TLA+ Y    V+V +   +   +++      V+ S++ + ++ 
Sbjct: 299 ERHQTLLFSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLG 358

Query: 238 ILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L           H     +VF   +A      + L     + VAL G  SQ ER  AL 
Sbjct: 359 LLVEDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALH 418

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R G   + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G + 
Sbjct: 419 DFRSGSTDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQAT 475


>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
          Length = 635

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 210/421 (49%), Gaps = 35/421 (8%)

Query: 2   KIFENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++F +IPQ+   I E L  +G   +T +Q     P     D++  ++TGSGKT+AF L L
Sbjct: 107 ELFSSIPQINQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPL 166

Query: 59  ASTL-----------------------LAE--NDRFSPASAPLALAIAPTRELAVQVGRE 93
              L                       L+E  N   +    P  L + PTREL+ QV   
Sbjct: 167 VEKLYKNIESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETT 226

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            + +       +    GG S   +   L+ G  I+ GTPGR+ DHI  K L++ ++K VV
Sbjct: 227 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVV 286

Query: 154 LDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           LDEADEML+LGF  DIE IL   + K  ++L++SAT    I  ++  Y K+ + +++ + 
Sbjct: 287 LDEADEMLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINT 346

Query: 213 -NRQHSDIDYRAVLVALSDRDNAI----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
            N+    I + A+      ++ A+    + +++ +G +  I+F  T+          + +
Sbjct: 347 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQ-VIIFTRTKLEADILASEGSFN 405

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
                 L G ++Q  R + +Q  R+G  +V IATD+AARG+D+ +++L+I     + P  
Sbjct: 406 YLNFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAI 465

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            +HRSGRTGRA +KG+S+ +     +    ++ +   +  + E  PS E +    ++ IL
Sbjct: 466 YIHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGIKFLTESLPSNEQVFHSVSKIIL 525

Query: 388 Q 388
           +
Sbjct: 526 K 526


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542


>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
          Length = 470

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 200/360 (55%), Gaps = 12/360 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +V+ EA   +G+   + +Q+  +   L  +DV+  A+TGSGKT AF L +   LL + 
Sbjct: 37  LTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQALLEKP 96

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+    E L    G+   V +GG+ +  +   L    H
Sbjct: 97  QRL------FALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALVLGKKPH 150

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRML 183
           I+V TPGRL DH+   KG ++  LK +++DEAD +L++ F  +++ IL S P+   R+ +
Sbjct: 151 IIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRGEGRKNM 210

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  +  L +   ++ VRV ++S+ +    +    + + L  ++  +V+I+    
Sbjct: 211 LFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVHIINELA 270

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + I+F ST +   +   +L    F  + L+G++SQ +R  +L   +     + IATDV
Sbjct: 271 GNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSILIATDV 330

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           A+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q    + +R E L 
Sbjct: 331 ASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQRIETLI 390


>gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 527

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 208/390 (53%), Gaps = 12/390 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   + +  A +E G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +  R +P  +   L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLTQ--RKTPYLS--VLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H++VGTPGR+ DH+   KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K    D V + +  +N     +    +    +   + +   
Sbjct: 229 DRRTMLFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           + ++  V  V  P     ++ E + Q +LQ
Sbjct: 409 IEQQTGVKCVEYP-----SLAESEVQLVLQ 433


>gi|261187455|ref|XP_002620151.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239594201|gb|EEQ76782.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis SLH14081]
 gi|239609244|gb|EEQ86231.1| ATP-dependent RNA helicase [Ajellomyces dermatitidis ER-3]
 gi|327356484|gb|EGE85341.1| ATP-dependent RNA helicase DBP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 489

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/325 (36%), Positives = 189/325 (58%), Gaps = 14/325 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +LA N   S +     + I PTRELA+Q+  +L   
Sbjct: 110 RDVIGVAETGSGKTLAFGVPCIRKVLAINASRSSSRISAVI-ITPTRELAMQIYDQLVKF 168

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
             K GV +A   GG S   +RR L+  A +VV TPGRL D    + L++  +K +VLDEA
Sbjct: 169 TPK-GVGLACIYGGASKDDQRRALKK-ASVVVATPGRLKDLHSDQSLDLQKVKYLVLDEA 226

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----AS 211
           D MLD GF  DI+ I+ + P  +KR+ +MF+AT   ++  LA  + KD V V I    +S
Sbjct: 227 DRMLDKGFEQDIKDIVGAMPSSRKRQTVMFTATWPMSVRKLAATFMKDPVTVTIGGDLSS 286

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAE 266
           + R ++ I     +V   D++  ++++L +Y   KNA    +VFC  +   +R  + +  
Sbjct: 287 DIRANTRIKQIVEVVKPEDKEYRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERFIRS 346

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F+V  + G+++Q ER  +L   + G   + +ATDVAARG+D+P ++LV++       E
Sbjct: 347 KGFKVAGIHGDMNQTERFKSLDAFKSGSVPLLVATDVAARGLDIPAVKLVLNVTFPLTVE 406

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +HR GRTGRAG  G+++ +  +N
Sbjct: 407 DYVHRIGRTGRAGSDGLAITMFTEN 431


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 183/347 (52%), Gaps = 16/347 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL E G     ++QE  L   +   D++  A+TG GKT+ FG+ L   +    D
Sbjct: 83  PEIV-KALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGD 141

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTREL +QV  +L+      G+      GG     +   L+ G  +
Sbjct: 142 -----GTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGIDV 196

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGRL D    + L +  ++ +VLDEADEMLDLGF  DIE IL   P +R+ ++FSA
Sbjct: 197 VIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSA 256

Query: 188 TISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNILRY 241
           T+   I TLA+ + +    +  A EN       + +   YRA  +   D+   I  +L+ 
Sbjct: 257 TMPGPIITLARTFLRQPTHIR-AEENDASAIHERTTQFVYRAHSM---DKPEVIARVLQA 312

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V +AT
Sbjct: 313 EDRGLTMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 372

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 373 DVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLV 419


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 35  YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 94  RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 153

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 154 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 213

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 214 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 273

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 274 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 333

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 334 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 381

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 382 ERNINIT 388


>gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana]
          Length = 441

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D  S      AL
Sbjct: 87  GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 140

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV    C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 141 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 200

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 201 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 260

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 261 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 320

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 321 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 380

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +    +R    + R  NV V  E  PS
Sbjct: 381 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYNVVV--EELPS 435


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 192/353 (54%), Gaps = 14/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           ++ ++I   +    Y   T VQ+  L P +R ++D++  AQTGSGKT AF L + S +  
Sbjct: 236 DLGEIIQSNIKNSTYARPTPVQKYAL-PIIRLKRDLMACAQTGSGKTAAFLLPILSQIYE 294

Query: 65  ENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                 P S        PL L +APTRELA Q+  E      ++ V   V  GG  V  +
Sbjct: 295 NGPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGADVGGQ 354

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175
            R+L  G H++V TPGRL D +    + +  +K VVLDEAD MLD+GF   I  I+  D+
Sbjct: 355 MRELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIVEQDT 414

Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            PK  +R+MLMFSAT    I  LA+++  + + + +        +I  + V V  +D+ +
Sbjct: 415 MPKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVVWVDENDKRS 474

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            ++++L   G+ +  +VF  T+         L     +  ++ G+ SQ+ER  AL+  R 
Sbjct: 475 FLLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRT 534

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+  + +AT VAARG+D+P+++ VI+ ++ S+ E  +HR GRTGR G  G++ 
Sbjct: 535 GQTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLAT 587


>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 478

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 195/349 (55%), Gaps = 10/349 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P+++ EA  +  Y   T +Q   +   L+ +D++  AQTGSGKT AF + +  +L 
Sbjct: 77  FGLVPEIL-EACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQSLY 135

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   F          +APTRELA Q+    + L +  G+     +GG+ +  + +DL  
Sbjct: 136 EQATPF------FCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKDLMR 189

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             H++V TPGRL DH+   KG ++  LK +++DEAD +LDL F   I+ +L   P++R  
Sbjct: 190 KPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRERST 249

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT++  I  L +    D ++V+++S+      +    ++V    ++  ++ +L  +
Sbjct: 250 YLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLLNKY 309

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+ I+F  T A   R T +LA  + F  + L G+L+Q +R  AL   +     + +AT
Sbjct: 310 QNKSIIIFTRTCAHAQR-TALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILVAT 368

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           DVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q
Sbjct: 369 DVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQ 417


>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 185/340 (54%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +     P 
Sbjct: 69  EACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDK-----PQ 123

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HI+V TP
Sbjct: 124 SL-FGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIIVATP 182

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 183 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 242

Query: 192 AITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L +    + +RV+I+S   Q  S +    + +    +D  +V +L     ++AI+F
Sbjct: 243 KVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVYLLNEFAGQSAIIF 302

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 303 TRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDILVATDVAARGLDI 362

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L  + +  +HR GRT RAG+ G +   + Q
Sbjct: 363 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQ 402


>gi|163800192|ref|ZP_02194093.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175635|gb|EDP60429.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 443

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 183/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +N  FS A  
Sbjct: 16  LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KNKSFS-ARD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELRSMLGGLSYDAALVLGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 194 VNGIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+ 
Sbjct: 254 ATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGIDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG +V ++
Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 181/337 (53%), Gaps = 1/337 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  A++  GY   T +Q   + P L  KD+L  AQTG+GKT AF L +   + AE
Sbjct: 7   NIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQRMSAE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P S P  L +APTRELA Q+G+              V  GGV    +   L  G 
Sbjct: 67  RRASRPGS-PRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNMLSRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +  ++  VLDE D MLD+GF  D++ I+ + P+K   L F
Sbjct: 126 DILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKHSSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++     LA++   D V V  +        ID +   V  + +++ ++++L     K
Sbjct: 186 SATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLLKEDMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  ++L+++  Q  A+ G  SQ +R+  ++  R GR RV +ATD+AA
Sbjct: 246 RVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RGID+ D+  V++ +L + PE+ +HR GRTGRAG  G
Sbjct: 306 RGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASG 342


>gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D  S      AL
Sbjct: 60  GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-ISLVQCQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV    C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDL 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +    +R    + R  NV V  E  PS
Sbjct: 354 NFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTEDERMLADIQRFYNVVV--EELPS 408


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  ++       +       L
Sbjct: 49  GFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQSI------DTSLRETQCL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + L  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 103 VLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 163 IRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFTQICLISATLPHEILEMTS 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 223 KFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV ARGID+  + LVI
Sbjct: 283 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLITTDVWARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 343 NYDLPNNRELYIHRIGRSGRFGRKGVAI 370


>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 483

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 189/358 (52%), Gaps = 8/358 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L     R   A  P +L
Sbjct: 2   GYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR---ARMPRSL 58

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ TPGRL D 
Sbjct: 59  ILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLIDL 118

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
               GL ++  + +V+DEAD MLD+GF  DIE I+      R+ L FSAT++P I  LA 
Sbjct: 119 FERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLAD 178

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + ++   + ++  +   + I+   V+V  +D+   +  +LR    +NAIVFC+ +  V 
Sbjct: 179 MFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDAVQNAIVFCNRKRDVD 238

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L +H F   AL G+L Q  R   L+  + G  ++ + +DVAARGID+  L  V +
Sbjct: 239 VLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVFN 298

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            +L  + E+ +HR GRTGRAGR G +      ++    +R   EA  +++    P +E
Sbjct: 299 FDLPFHAEDYVHRIGRTGRAGRSGHAY-----SLATPYDRALAEAIETLIGHAIPRLE 351


>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
 gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
           3083-94]
 gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
 gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
 gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
          Length = 454

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   +    RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 511

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 13/377 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           A +E G+ N T +Q A + P ++E +D++  AQTGSGKT A+ L L + LL +    S  
Sbjct: 51  ACAEAGWQNPTRIQAATI-PVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ----SKV 105

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QV  +   L    G+ VA  +GG  +  +  +L    H+VVGTP
Sbjct: 106 PYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPHVVVGTP 165

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR+ DH++  KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P  R+ ++FSAT++ 
Sbjct: 166 GRIKDHLQNTKGFQLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLFSATLNT 225

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L K    D V + +  +N     +    V    +     +   L      + +VFC
Sbjct: 226 KIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLPYLHLYLTRETGNHILVFC 285

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            + A V R T  L     Q + L G + Q  R+ AL   ++G+ R+ + TDVA RG+D+ 
Sbjct: 286 RSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRILVCTDVAQRGLDIS 345

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
             ++V++  L    E+ +HR GRT RAG +G +V +I Q      +R+  EA   V  E 
Sbjct: 346 HTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRI--EATTGVKCEE 403

Query: 372 APSVEAIRERDAQRILQ 388
            P    ++E D   +LQ
Sbjct: 404 WP----VQEGDVAAVLQ 416


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 187/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 184 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 242

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 243 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 302

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 303 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 362

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 363 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 422

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 423 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 482

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 483 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 526


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 181/347 (52%), Gaps = 11/347 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ GY   T VQ+  +   L+  DV+  AQTG+GKT AF L L   L+    +    
Sbjct: 14  KALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQRLMTLPSQAEQV 73

Query: 73  SAPL-----------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           S  +           AL + PTRELA QV   +      T + VAV  GG S++ + + L
Sbjct: 74  STAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTSMNVQVKAL 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA I+V TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI+ I+   P +R+
Sbjct: 134 NAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMKRMPAERQ 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT S  +  LA +   +   V +   N     ++     V    +   +  ++  
Sbjct: 194 TLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKAELLAYLIGS 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+    +  K L     +  +++G+ SQ  R  AL   + G+ RV +AT
Sbjct: 254 RNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGKTRVLVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+  LE V++ ++    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 DVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLM 360


>gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16]
          Length = 747

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 185/367 (50%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
            P  +  A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    T L 
Sbjct: 325 FPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 384

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   +   P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 385 KIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKLRM 444

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ IL+  P      
Sbjct: 445 GVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNMKK 504

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+SPAI  LA+ Y +    V+I +  +    
Sbjct: 505 DTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPTER 564

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    ++    +   ++ ++  H     IVF + +       K LA+   +   L G  
Sbjct: 565 VEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHGGK 624

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q  R  AL+ ++D   ++ +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 625 GQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 684

Query: 339 GRKGMSV 345
           G+ G ++
Sbjct: 685 GKHGKAI 691


>gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 552

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 184/354 (51%), Gaps = 13/354 (3%)

Query: 8   PQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           P+ IG+ L       GY   T VQ+  +    + +D++  AQTGSGKT  F   +  +++
Sbjct: 126 PETIGDDLFRNTQLCGYSRPTPVQKYSVPICTQGRDLMACAQTGSGKTAGFLFPIIMSMI 185

Query: 64  AENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                  P +A     P AL +APTRELA Q+  E +     TG+   V  GG +V  + 
Sbjct: 186 KRGGSDPPENARRRIYPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQL 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+++ G  ++V TPGRL D I    L +  +  +VLDEAD MLD+GF   I  I++ S  
Sbjct: 246 REMERGCDLLVATPGRLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGM 305

Query: 179 ----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R+ +MFSAT    I  LA ++ +D V + +        D+      V   D+ +A
Sbjct: 306 PGGIDRQTMMFSATFPANIQRLASDFMRDYVFLTVGRVGSASKDVTQTVEFVEERDKVDA 365

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L        ++F  T+ S      VL    F   ++ G+ SQ+ER +AL+  ++G 
Sbjct: 366 LMKFLLTIQDGLILIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGN 425

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  AT VAARG+D+P++  V++ +L SN ++ +HR GRTGRAG  G ++  I
Sbjct: 426 TPILCATSVAARGLDIPNVTQVVNYDLPSNIDDYVHRIGRTGRAGNTGAALSFI 479


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +    L   
Sbjct: 215 FPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPMIMGALESE 274

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCI-GGVSVHRER 118
            R  + P   P  L + P+RELA Q      +   K        +  VCI GG S   + 
Sbjct: 275 IRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIGGCSAVEQA 334

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++++ G H +V TPGRL D +  + L +   + +  DEAD M+D+GF +++  +LDS   
Sbjct: 335 KEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVRNVLDSFGH 394

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   ++   +++ 
Sbjct: 395 QRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHC 454

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   A   ++FC  +  V    + L        A+ G L+Q+ERS A++  R+GR  V 
Sbjct: 455 LQ-KTAPPVLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAFREGRKDVL 513

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +N +
Sbjct: 514 VGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNKNQE 568


>gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 465

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 5/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+  AL   G      +Q A +   L  +DVL  A TGSGKT+AFGL +   L   
Sbjct: 20  GLPAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRLKGA 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P  + + PTRELA+Q+ R L+      G+ VA  +GGV + R+   L  G 
Sbjct: 80  ASRRG---YPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSRGV 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+    +++  +  + LDEAD M DLGF   +  ILD +P   + L+F
Sbjct: 137 DLLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVTTILDKTPAGGQRLLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL + Y  + V  + A        + +  + V   D+ + + +I    G  
Sbjct: 197 SATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLLYVDRRDKYSVVAHIGSRPG-- 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V R  + L        AL G  +Q  R+  L    DG   V +ATDVAA
Sbjct: 255 RTLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVLVATDVAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  + LV+H +  +  ++ LHR+GRT RAG  G+ V ++ ++ +   E+L R+A +
Sbjct: 315 RGIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERAAVEKLTRQAGL 374

Query: 366 SVVWEP 371
            +   P
Sbjct: 375 DITATP 380


>gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 384

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 186/352 (52%), Gaps = 10/352 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + ++GY   + +Q+  + P  + +DV+  +Q+G+GKT  F + +   + +        
Sbjct: 25  KGIYQQGYTKPSGIQQKGIVPITKGRDVIAQSQSGTGKTATFSIGILQNVESNKREVQ-- 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + I+PTRELAVQ  R +  L     + V  CIGG S   + + ++ G  ++ GTP
Sbjct: 83  ----VIIISPTRELAVQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEKGCQVISGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+   I+ + +N+ H+K +V+DEADEML+ GF   I  I    P KR++++ SAT++P 
Sbjct: 139 GRIMGLIKKRVINVRHIKTLVIDEADEMLNKGFMPIIYDIFKYLPIKRQIVLCSATLTPD 198

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +  +        + + I  +     +I  Y   +     + + +  I        +++FC
Sbjct: 199 VIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEMEGEEQKFDTLCEIYDSMTITQSVIFC 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + R  V   T+ + +  F V+++  E+ QQER   + + R G  RV I TDV ARGID+ 
Sbjct: 259 NMRKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLITTDVWARGIDVT 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
            + LVI+ ++  N E  +HR GR+GR GR G+++ FV+   M+  R  ER +
Sbjct: 319 QISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMEELRDLERYY 370


>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 448

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 184/352 (52%), Gaps = 5/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L + 
Sbjct: 1   MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60

Query: 60  STL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
             L    A  ++F       AL + PTRELA QV   +        +   V  GGV ++ 
Sbjct: 61  HRLSQGTAPKNKFG-GKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ G  I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   
Sbjct: 120 QIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALV 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK ++ L+FSAT S  I  LA    K+   + +   N     I      V    +   ++
Sbjct: 180 PKDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLL 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I++ H     +VF  T+   +   + L ++  Q +AL G  SQ  R+ AL   + G  R
Sbjct: 240 HIIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIR 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +ATD+AARGID+ DL  V++ E+ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLV 351


>gi|212528762|ref|XP_002144538.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073936|gb|EEA28023.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 452

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 182/337 (54%), Gaps = 11/337 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TSVQ A        +DV+  A+TGSGKT+AFGL     ++    +  P S P A+ + PT
Sbjct: 111 TSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKP-SHPRAVILTPT 169

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +LE    +  V V    GGV    +R  L++ A IVV TPGRL D      
Sbjct: 170 RELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLESEGA 228

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSATISPAITTLAKNYQK 202
           +N+S +K +VLDEAD MLD GF  DI+ I+   P  RR   MF+AT   ++  LA ++ +
Sbjct: 229 INLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQ 288

Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGAKNAIVFCSTR 254
           D V V +    + + R ++ I     ++   D++N +  IL    R       +VFC  +
Sbjct: 289 DPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCLYK 348

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R  +++    + V  + G+LSQ +R  +L   + G   + +ATDVAARG+D+P ++
Sbjct: 349 KEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVK 408

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            V++       E+ +HR GRTGRAG  G ++ +  +N
Sbjct: 409 TVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTEN 445


>gi|329765536|ref|ZP_08257112.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137974|gb|EGG42234.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 371

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 160/269 (59%), Gaps = 1/269 (0%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA+Q+  E++     TG+ VA   GG  +  +   L  G  IVV TPGRL DH+
Sbjct: 1   MAPTRELAMQITTEIKKFGKYTGIRVATVYGGQGMGLQLDALDRGVEIVVATPGRLIDHL 60

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   + +  +  +VLDEAD MLD+GF DDI+FILD +P++R M +FSAT+   I  LA+ 
Sbjct: 61  KRGSIELGDVTHIVLDEADTMLDMGFVDDIQFILDLAPEERVMSLFSATMPTEILRLAEE 120

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           Y K+  +  + +++     ID   +++   D+   +++ ++    +  IVFCST+     
Sbjct: 121 YLKNPKQFLLDADDLSGEGIDQAYLVIKDRDKMKYLIDFIKPLKGQ-IIVFCSTKYRTRD 179

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L +  F  VA+ G++SQ  R  ++   R G+  + +ATDVA+RGID+P +ELV++ 
Sbjct: 180 VAKYLHQEKFDAVAIEGDMSQSRREQSMGKFRSGKVDILVATDVASRGIDVPRVELVVNY 239

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +      HR GRT RAG KG ++ ++
Sbjct: 240 DVPNQEMAYFHRIGRTARAGAKGRAITLV 268


>gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 412

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 188/340 (55%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L+E  Y+  T +QE ++   L  KD++  AQTGSGKT +F L + +    +N    
Sbjct: 12  INKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPILNLWYKQNYEGK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P      L + PTRELA+QV         Y      V   IGG S+  +  ++Q G  ++
Sbjct: 72  PKIR--CLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGEQLLNIQKGCDVI 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V T GRL D ++ K +++S+L   VLDEAD+MLD GF +++E +L+  PKKR+ L+FSAT
Sbjct: 130 VATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVLPKKRQNLLFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  +A    ++ + ++I +E      I+ R + V   +R   + ++++    +  +
Sbjct: 190 YPTKMLNIASKITENPIEISIENEEATVQSINQRVIEVNKENRSALLRHLIKEENWQQVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + + S         ++ F+  +  G+L Q+ER+  L+  +  + +V  ATD+AARG+
Sbjct: 250 VFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAKKIKVLFATDIAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + ++  V++ +L     + +HR GRTGRAG+ G++V  I
Sbjct: 310 HIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFI 349


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 194/365 (53%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I E   ++G+   T++Q   +   +  +D++  AQTGSGKT+A+ +A A   +   
Sbjct: 123 LPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAY-VAPALVHIQHQ 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+AL +APTRELA Q+ +       +T        GG     + RDL+ GA 
Sbjct: 182 ETVHRGDGPIALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRDLERGAE 241

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 242 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWS 301

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+ +  D +++NI S N   +    + V V    ++D  ++ +L    A+
Sbjct: 302 ATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE 361

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +  + ++ V++ G+ SQQER   L   R+GR  + +ATD
Sbjct: 362 AETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATD 421

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L   
Sbjct: 422 VAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGDLINV 481

Query: 360 FREAN 364
            REAN
Sbjct: 482 LREAN 486


>gi|225468923|ref|XP_002273212.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 470

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   + +Q   +   L  KD++  AQTGSGKT AF L +   LL         
Sbjct: 56  EACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALL------DTP 109

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  ++PTRELA+Q+  + E L +  G+  AV +GGV   ++   L    HIVVGTP
Sbjct: 110 QVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPHIVVGTP 169

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  +K +VLDEAD +L+  F   I+ IL   P++R+  +FSAT++ 
Sbjct: 170 GRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKTYLFSATMTK 229

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++ V++ +AS+      +  +   V    ++  +V IL        +VF 
Sbjct: 230 KVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGSTTMVFT 289

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  +      +L     + + +SG +SQ +R  AL   + G   + I TDVA+RG+D+P
Sbjct: 290 RTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILICTDVASRGLDIP 349

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q
Sbjct: 350 SVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQ 388


>gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
          Length = 415

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 189/348 (54%), Gaps = 4/348 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   KRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 309 LVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 195/344 (56%), Gaps = 10/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +G+ ++E G+   T +QE  L   L  KDV    QTG+GKT AF + L   LL  N
Sbjct: 8   LPEPLGKGIAEAGFTECTPIQELTLPLTLGGKDVAGRGQTGTGKTAAFLITLFDRLLKNN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P AL +APTREL VQ+ ++   L    G  +    GGV  +++R  L+ G  
Sbjct: 68  PPASPN--PRALILAPTRELVVQIHQDALLLGKHCGFSIQAAYGGVDYNKQREALRTGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           +++GTPGRL D ++ K   ++ ++ +V+DEAD M DLGF  D+ F+L   P   KR+ LM
Sbjct: 126 VLIGTPGRLIDFLKQKIYTLADIEMLVIDEADRMFDLGFIGDLRFLLRRLPAFDKRQNLM 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  LA  +     +V+++ ++     I+     V+  ++   ++ +LR  G 
Sbjct: 186 FSATLNHRVMELAYEFMNMPEKVSVSGDSMTADKIEEILFHVSSKEKFPLLLGLLRREGM 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD---GRARVCIAT 301
           +  ++F +T+    R    L  +      +SG+++Q++R   L++MRD   G+  + IAT
Sbjct: 246 ERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKR---LRIMRDFKAGKLPMLIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++
Sbjct: 303 DVASRGLHIEGVSHVINYDLPEDCEDYVHRIGRTARAGAEGKAI 346


>gi|212528760|ref|XP_002144537.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210073935|gb|EEA28022.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 503

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 182/337 (54%), Gaps = 11/337 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TSVQ A        +DV+  A+TGSGKT+AFGL     ++    +  P S P A+ + PT
Sbjct: 111 TSVQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCVKNMVDSKKKLKP-SHPRAVILTPT 169

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +LE    +  V V    GGV    +R  L++ A IVV TPGRL D      
Sbjct: 170 RELAMQIYEQLEGYAPRVSVRVTCIFGGVRKDEQREALKDTA-IVVATPGRLKDLESEGA 228

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSATISPAITTLAKNYQK 202
           +N+S +K +VLDEAD MLD GF  DI+ I+   P  RR   MF+AT   ++  LA ++ +
Sbjct: 229 INLSKVKYLVLDEADRMLDKGFEQDIKDIVAPMPVSRRQTAMFTATWPVSVRNLANSFTQ 288

Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNIL----RYHGAKNAIVFCSTR 254
           D V V +    + + R ++ I     ++   D++N +  IL    R       +VFC  +
Sbjct: 289 DPVMVTVGGKPSEDPRANTRIKQVVEVLDGRDKENRLTQILAKLTRESSQGKILVFCLYK 348

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R  +++    + V  + G+LSQ +R  +L   + G   + +ATDVAARG+D+P ++
Sbjct: 349 KEAMRIERLIQSRGYAVAGIHGDLSQSDRFKSLASFKSGAVPILVATDVAARGLDIPAVK 408

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            V++       E+ +HR GRTGRAG  G ++ +  +N
Sbjct: 409 TVVNVTFPLTIEDYVHRIGRTGRAGADGHAITLFTEN 445


>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 177/338 (52%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT +F L +   LL    +  
Sbjct: 19  ITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILHRLLQNRIKPQ 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S  + L ++PTREL+ Q+            +  A+ IGGV + R+ R +  G  ++V 
Sbjct: 79  PKSCRV-LVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQVRAVMQGVEVMVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P KR+ L FSAT+ 
Sbjct: 138 TPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPVKRQTLFFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   +D  RV +         I  R + V  + +   +  +L+      A++F
Sbjct: 198 KDIAELAEQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAFLAQLLKQEPVNRALIF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  +ATD+AARGID+
Sbjct: 258 TRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTLVATDIAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  V++ +L + PE  +HR GRT RAG  G ++ ++
Sbjct: 318 DGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLV 355


>gi|46124943|ref|XP_387025.1| hypothetical protein FG06849.1 [Gibberella zeae PH-1]
 gi|91207408|sp|Q4I7F9|PRP28_GIBZE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 721

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/378 (31%), Positives = 195/378 (51%), Gaps = 30/378 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+PQ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L
Sbjct: 294 NLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDL 353

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D  +    P AL +APTREL  Q+  E        G  V   +GG  +  +  +L++
Sbjct: 354 PPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLRD 413

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GA IVV TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P      
Sbjct: 414 GAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEKP 473

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              + R+ +M++AT+ P +  +AK Y +    V I +       
Sbjct: 474 DTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVDT 533

Query: 219 IDYRAVLVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           ++ R   V+  DR    +  +   G      IVF + + +     + + +  +  V L G
Sbjct: 534 VEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGWSAVTLHG 593

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTG
Sbjct: 594 SKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 653

Query: 337 RAGRKGMSV-FVIPQNMQ 353
           RAG+ G+++ F+ P++ +
Sbjct: 654 RAGKSGVAITFLGPEDHE 671


>gi|86130411|ref|ZP_01049011.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 428

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/349 (36%), Positives = 192/349 (55%), Gaps = 22/349 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I EAL+    V  T +Q+  + P L   +KDV+  AQTG+GKT+AFG+ L   +    DR
Sbjct: 14  IQEALAALDIVQPTDIQQQAI-PALLTSKKDVVALAQTGTGKTLAFGVPLLQLI----DR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHI 127
            +P     A+ + PTREL  Q+   +    A+   V  AV  GG+ V      L+  A I
Sbjct: 69  TNPTVQ--AVILVPTRELGQQIYSNIVAYAAQLPEVSAAVFYGGIPVKENIERLKEPAQI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D +  K +NIS    +VLDEADEM+    ++ I+ I+++ P  RR  +FSA
Sbjct: 127 VIATPGRLIDLMERKAINISQANYLVLDEADEMVS-ALKNSIDVIVETMPNNRRTFLFSA 185

Query: 188 TISPAITTLAKNY------QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           T+   +  L +NY      +  A R N+AS    H   DY  V+V   ++ + +++ L  
Sbjct: 186 TMPGTVKQLVQNYLSKNPLEITAERANLASHKITH---DY--VVVEPIEKLDVLMHFLNS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+FC T+A+V++  K LA + F   AL G LSQ  R   +   R+G   + +AT
Sbjct: 241 KIGERGIIFCKTKAAVNKLAKNLAINKFSSGALHGSLSQAIRDRMMGQFREGHIDILVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+AARGID+ ++  V++  L    +  +HR+GRT RAG+ G ++ V+ Q
Sbjct: 301 DLAARGIDVKEISYVVNYHLPEFYDMYVHRTGRTARAGKTGYALTVLQQ 349


>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 481

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 186/333 (55%), Gaps = 20/333 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A +   L+ +D++ +A+TGSGKT+AF L +   LL   DR  P      L
Sbjct: 89  GYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPMLQALL---DRPRPL---FGL 142

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+G+  E  +A   +  AV +GG+ +  +   L    H+V          
Sbjct: 143 VLSPTRELAVQIGQTFES-FAAISLRCAVVVGGMDMVSQSIALAKKPHVVT--------- 192

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
              KG ++ HL+ +V+DEAD +LD+ F   +E IL   P++RR ++FSAT+S  + +L +
Sbjct: 193 ---KGFSLKHLQYLVIDEADRLLDMDFGPILEKILRHLPRERRTMLFSATMSSQVESLQR 249

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIVFCSTRASV 257
              +D VRVN+AS   Q      ++V+V  + R D  +V ++     ++ +VF  T    
Sbjct: 250 ASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDVCLVYLVNEFYGQSIMVFTRTIYET 309

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            R   +L    F  V L   LSQ +R +AL  ++ G   + IATDVAARG+D+P + +VI
Sbjct: 310 QRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREMLIATDVAARGLDIPHIGIVI 369

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + ++  + +  +HR GRT RAG+ G +V ++ Q
Sbjct: 370 NYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQ 402


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 189/338 (55%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL    
Sbjct: 10  PELV-KALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVIQRLLDSGK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + SP +A  AL +APTRELA Q+ + ++     T + V    GG  +  + R L++G  I
Sbjct: 69  KPSPHTA-RALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQLESGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +H+    +++++L+ +V DEAD +LD+GF + +  I+       +++MFSA
Sbjct: 128 LVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSPQIMMFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA +  +   R+N    N   S + +    V    +   +  ++     +  
Sbjct: 188 TTSAQLNQLAGDILRKPKRINADRVNTTASTVAHVVYPVDQERKTELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + ++  K L     + V   G+  Q  R  AL   ++G+ARV +ATDVAARG
Sbjct: 248 LVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARVMVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  VI+ ++    E+ +HR GRTGRAG++G +V
Sbjct: 308 LDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 194/372 (52%), Gaps = 14/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+SE GY   + +Q + + P L  +D++  AQTG+GKT AF L +   L A   R    
Sbjct: 14  KAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLDRLSAAAPRRK-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A  AL + PTRELA+Q+G   +       +   V  GGV    +   ++ G  I++  P
Sbjct: 72  GAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIRKGVDILIACP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I    +++S+L+  VLDEAD MLD+GF  D++ ++   P KR+ LMFSAT+   
Sbjct: 132 GRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQNLMFSATMPKE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVF 250
           I  LA     D   V +   +     ID     V   ++   +  +++      +NA+VF
Sbjct: 192 IEQLAAGILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWLIKNLTPPVQNALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L +      A+ G  SQ  R  AL+  ++G+ RV +ATD+AARGID+
Sbjct: 252 SRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVLVATDIAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367
            +L  V + +L   PE  +HR GRT RAG  G +V F  P+ M+  A  E+L R   + V
Sbjct: 312 SELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAGIEKLNRR-KIPV 370

Query: 368 V----WE--PAP 373
           V    W+  PAP
Sbjct: 371 VSGHPWDGVPAP 382


>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
          Length = 455

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 186/339 (54%), Gaps = 4/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L +   LL+        
Sbjct: 37  EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++   +    HIVVGTP
Sbjct: 94  QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  +K +VLDEAD++L++ F   ++ IL   PK RR  +FSAT++ 
Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPKDRRTFLFSATMTK 213

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++  +V ++S+      +      V   D+D  ++++L        ++F 
Sbjct: 214 KVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVLNERLESMIMIFV 273

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S      +L     + +++SG++SQ +R  AL   +     + I TDVA+RG+D+ 
Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q
Sbjct: 334 GVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQ 372


>gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822]
 gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 462

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 22/389 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L  + +R     AP AL
Sbjct: 23  GFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNL--DVNRL----APQAL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ D
Sbjct: 77  VLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L+
Sbjct: 137 HLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLS 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   + + +++   S I+     +    R +A+  +L +    + + FC+T+   
Sbjct: 197 ARFLRNPAEIKVEAQH-DASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIRS 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  VI
Sbjct: 256 HDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVI 315

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAP--- 373
           + +++ + E  +HR GR+GR  +KG+++    P+ M        R AN+   ++ AP   
Sbjct: 316 NVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEM--------RWANLIEQYQGAPLKW 367

Query: 374 -SVEAIRERDAQRILQDPLFLDSIQGDEK 401
             + ++R + + R L+ P+    IQG +K
Sbjct: 368 ADLGSLRPK-SDRPLRAPMITLCIQGGKK 395


>gi|70989821|ref|XP_749760.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|74668891|sp|Q4WH83|DBP3_ASPFU RecName: Full=ATP-dependent RNA helicase dbp3
 gi|66847391|gb|EAL87722.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159129169|gb|EDP54283.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 503

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 185/336 (55%), Gaps = 11/336 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T +Q A        +DV+  A+TGSGKT+AFGL     +L         + P A+ 
Sbjct: 105 FSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVI 164

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I+PTRELA+Q+  +L    A   + V    GGV    +R  L+  A IVV TPGRL D  
Sbjct: 165 ISPTRELAMQIYDQLSKFGASVDIRVTCIYGGVKKDEQREALKTAA-IVVATPGRLKDLK 223

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAK 198
               +++  +K +VLDEAD MLD GF  DI+ I+ S+P   R+ +MF+AT  P++  LA 
Sbjct: 224 DDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSTPDSTRQTVMFTATWPPSVRDLAA 283

Query: 199 NYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA---KNAIV 249
           ++   AV V I    +++ R ++ I     +V   +++  +V +L     GA      +V
Sbjct: 284 SFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEARLVQLLSRSQRGAAVGDKVLV 343

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC  +    R  ++L    F+V  + G+L+Q ER  +L+  + G A V +ATDVAARG+D
Sbjct: 344 FCLYKKEAVRVERLLRSKNFKVAGIHGDLNQHERFKSLEAFKTGSATVLVATDVAARGLD 403

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P ++LVI+       E+ +HR GRTGRAG  G ++
Sbjct: 404 IPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439


>gi|302340274|ref|YP_003805480.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637459|gb|ADK82886.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 541

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 190/348 (54%), Gaps = 7/348 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +   + + G+     VQEA L   L+ KDV V +QTGSGKT AF +   
Sbjct: 1   MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLV--- 57

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+        P      + I+PTRELAVQ+  E + L A  G+ +    GGV   ++  
Sbjct: 58  -TIFQRWCTTKPEERRSTMIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEE 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPK 178
            L+ G  + +GTPGRL D  + + ++ + +  VV+DEAD + D+GF  DI  +L    P+
Sbjct: 117 ALKKGVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPR 176

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++RM M FSAT+   +  +A  +    V V+I  E+    +I      V    + + ++ 
Sbjct: 177 EKRMTMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELYHVEGEKKFSLMLG 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+ +   NAI+F + + +     K L+ + +    L G+L Q++R + +  ++ G  R 
Sbjct: 237 LLKKYDPPNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRF 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+ + DL +VI+ ++  +PE+ +HR GRT RAG+ G ++
Sbjct: 297 LVATDVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAI 344


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 182/337 (54%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+GY   + +QE  +   L  +D++ +AQTG+GKT  F L +  TL   +    P 
Sbjct: 28  QALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLETL---SHGARPG 84

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              + AL + PTRELA QV            +   V  GGV ++ + + LQ G  ++V T
Sbjct: 85  RGQIRALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQRLQQGVDLLVAT 144

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   +    ++ +VLDEAD MLD+GF  DI  +L   P++R+ L+FSAT SP
Sbjct: 145 PGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERRQNLLFSATFSP 204

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  LA     D +++ I   N+    +        +  + + + +++R +  +  +VF 
Sbjct: 205 SIRKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSHLIRSNDWQQVLVFS 264

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L        A+ G  SQ  R+ ALQ  +DG  RV +ATD+AARGID+ 
Sbjct: 265 RTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAARGIDIQ 324

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 325 QLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLV 361


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 188/337 (55%), Gaps = 14/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPLA 77
           G+   T +Q A     L  +D++  A+TGSGKT+AFG+     +L+   D+     A   
Sbjct: 197 GFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKA--- 253

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + ++PTRELAVQ+  +L  L    G+ V    GGV    +    +  AHIVV TPGRL D
Sbjct: 254 VIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKDPQVAACRK-AHIVVATPGRLND 312

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I     ++S+   VVLDEAD MLD GF + I  I+  +PKKR+ LMF+AT  P++  LA
Sbjct: 313 LIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLA 372

Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA----I 248
             +    VR+ I    + E R +  I     ++    ++  ++ +L+ Y   KN     +
Sbjct: 373 STFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRIL 432

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC  +    R    +    F+V  + G+LSQ++RS +L   ++G+  + +ATDVAARG+
Sbjct: 433 VFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGL 492

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P ++LVI+       E+ +HR GRTGRAG++G+++
Sbjct: 493 DIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAI 529


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 185/355 (52%), Gaps = 9/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I + L ++     T +Q   L   L  +D++  A TGSGKT+ F L L    L   
Sbjct: 224 FPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLEAE 283

Query: 67  DR--FSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVV-AVC-IGGVSVHRER 118
            R        P+ L I P+RELA Q    +    E+LY      + ++C IGG+S + + 
Sbjct: 284 IRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGISAYEQG 343

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R++Q G H++V TPGRL D +  K + +   + +  DEAD ++DLGF +++   LD    
Sbjct: 344 REIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSN 403

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+   + + +N+      + D+      V    + + ++ +
Sbjct: 404 QRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLEV 463

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++FC  +  V    + L       VA+ G L Q ER  A+ + R+G+  + 
Sbjct: 464 LQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDIL 522

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++   I +N +
Sbjct: 523 VGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 577


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 185/337 (54%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   ++VQ   +    + +D +  AQ+G+GKT  F +++   +       + +    AL
Sbjct: 48  GYETPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVI------NTASRETQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   ++ L     V    CIGG +V  + R L  G HIV GTPGR+ D 
Sbjct: 102 VLSPTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRKLDQGQHIVSGTPGRVADM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 162 IRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPATQVVVVSATLPQDVLEMTY 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR  V
Sbjct: 222 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++ Q+ER + +Q  R    RV I+TDV ARGID+  + LVI
Sbjct: 282 DWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVLISTDVWARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 342 NYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVR 378


>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 462

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +DVL  A TG+GKT AF L +   L+       P  
Sbjct: 15  ALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMD-----GPRG 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL +APTRELA Q    +  L + + +      GGV V  +   L+ G  +VVG PG
Sbjct: 70  AVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRAGVEVVVGCPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHIR   L++S L+ +VLDE D + DLGF  D+  +L   P   + ++FSAT+  A+
Sbjct: 130 RLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTCQRMLFSATMPDAV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA    +  V V + +     S + +    V    R   +   LR     + +VF  T
Sbjct: 190 RVLAAEALRQPVTVQVDAVQ-PASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFVRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R  + L    F V  L G+LSQ+ R  AL+  RDGR  V +ATDVAARG+D+  +
Sbjct: 249 RHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARGLDISQV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V++ ++ S  +  +HR GRTGRA R G ++ FV P +
Sbjct: 309 THVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPAD 347


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A           EN R
Sbjct: 241 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR 300

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL+L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 301 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 360

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ +
Sbjct: 361 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 420

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 421 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 480

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 481 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 540

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E
Sbjct: 541 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 588

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 589 KNINIT 594


>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 400

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 212/396 (53%), Gaps = 24/396 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   + +A    G    T +Q+ ++   L   D++  +QTGSGKT+AF L + S LL +
Sbjct: 7   NIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIVSRLLLK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N  F        L +APTREL+ Q+  E   ++  TG+ V + +GG + + +   L    
Sbjct: 67  NRSF------FCLVVAPTRELSSQIA-ECFNMFGSTGLRVCLLVGGTNFNLQANQLSKHP 119

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HIVVGTPGR+ +HI + K      ++ +VLDEAD   +  F +D+E I+ S  +KR+ L+
Sbjct: 120 HIVVGTPGRIAEHILKTKSFKAERIRKLVLDEADRFFEQDFVEDLETIIRSLREKRQTLL 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           F+AT+S  I+ L+ +       + +       S +       A+  + +A+V  L  +  
Sbjct: 180 FTATMSNEISKLSSSILIKPKTIRVVEGYETVSALKEYYFFTAMKWKSSALVEFLEMNPG 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVF S   +    +  L++  F   AL GELSQ++R   ++M ++ +  V + TDV 
Sbjct: 240 ASTIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSVLVCTDVG 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           +RG+D+  ++LVI+ ++  + ++ +HR GRT RAGR G ++ ++ Q      +R E + +
Sbjct: 300 SRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQRVEFVLK 359

Query: 362 EANVSVVWEPAP---SVEAIRER------DAQRILQ 388
           ++    + E  P   + E+IRE+      +AQ IL+
Sbjct: 360 KS----LEEFKPVKKNFESIREKVEETIQEAQEILK 391


>gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
 gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
          Length = 418

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 204/373 (54%), Gaps = 14/373 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
           N    + E L   G+   T +QE  +   L  KD++  AQTG+GKT AF L + + +  +
Sbjct: 7   NFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVLNKISKS 66

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDL 121
            +D+ +       L +APTRELA+Q+ ++++      G+      GG   +   ++++ L
Sbjct: 67  GSDKLN------TLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQKKAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IVV TPGRL   + G  +++S L+ ++LDEAD M+D+GF DDI  I++  PK+R+
Sbjct: 121 ETGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPKERQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I   +    K+   ++IA   +  + +      V    +++ + NIL  
Sbjct: 181 TILFSATMPSKIRQFSMKILKNPQEISIAI-GKTAAGVTQAMYSVYDGQKEDLVKNILSQ 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F ST+  V    K L +  F+V A   +L Q ER   +   ++   ++ I T
Sbjct: 240 KAYEAVIIFASTKEKVKGLYKKLRKD-FEVEAFHSDLEQIEREKIMSGFKNKSIKILIGT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           D+ +RGID+  +ELVI+ +  S+PE+ +HR GRT RA ++G ++ FV P++ Q +  R+ 
Sbjct: 299 DIISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKD-QYKFARIE 357

Query: 361 REANVSVVWEPAP 373
           +   + +   P P
Sbjct: 358 KLIGMEITQIPLP 370


>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   + P L  +DVL  A TG+GKT AF L +   L+       P  
Sbjct: 15  ALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQRLMD-----GPRG 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL +APTRELA Q    +  L + + +      GGV V  +   L+ G  +VVG PG
Sbjct: 70  AVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRLRAGVEVVVGCPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHIR   L++S L+ +VLDE D + DLGF  D+  +L   P   + ++FSAT+  A+
Sbjct: 130 RLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQRMLFSATMPDAV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA    +  V V +    +  S + +    V    R   +   LR     + +VF  T
Sbjct: 190 RVLAAEALRQPVTVQV-DAVQPASTVHHALYPVPAHLRTPLLKTFLRSGPEGSVVVFVRT 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R  + L    F V  L G+LSQ+ R  AL+  RDGR  V +ATDVAARG+D+  +
Sbjct: 249 RHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVATDVAARGLDISQV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             V++ ++ S  +  +HR GRTGRA R G ++ FV P +
Sbjct: 309 THVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPAD 347


>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
 gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 400

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 191/345 (55%), Gaps = 8/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +   E+G    T VQ  ++   L   DV+  +QTGSGKT+AF L + S LL +N
Sbjct: 8   IDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L +APTREL+ Q+  E   ++  TG+ V + +GG + + +   L    H
Sbjct: 68  RSF------YCLVVAPTRELSSQIA-ECFNMFQATGLRVCLLVGGANFNVQANQLSKRPH 120

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ +H+ + K      ++  VLDEAD   +  F +D+E I+ S  +KR+ L+F
Sbjct: 121 VVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT+S  I+ L+ +  K    +  A +      +    + VA+  +++A+V +L      
Sbjct: 181 TATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGM 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVF S   +    +  LA   F   AL GELSQ++R  A++  ++ R  V + TD+ +
Sbjct: 241 SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+  ++LVI+ ++  + ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 301 RGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQ 345


>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 175/328 (53%), Gaps = 4/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +QE  +   L+ +D++  A+TGSGKT AF + +   LL   D      +  A  +APT
Sbjct: 53  SKIQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLL---DAAPHRKSTWACVLAPT 109

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           REL VQ+G++ E L A   +  A  +GG+ +  +   L    HI+V +PGRL DH+   K
Sbjct: 110 RELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMALSKKPHIIVASPGRLVDHLENTK 169

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  +K +V+DEAD +L + F D +  I+ S P+ R+  +FSAT++  ++ L +    
Sbjct: 170 GFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMTNKVSQLQRASLT 229

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
             V+  +A +      +    + V    +   +  +L +      ++F  T  +  R   
Sbjct: 230 RPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMAT 289

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L       V L G+++Q  R  AL   R G   V +ATDVAARG+D+P +++VI+ ++ 
Sbjct: 290 TLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVP 349

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            NPE  +HR GRT RAGR G SV ++ Q
Sbjct: 350 KNPEEYIHRVGRTARAGRTGRSVTLVTQ 377


>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
          Length = 543

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 194/346 (56%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P++I +A     Y   T +Q   + P L   D++  AQTGSGKT AF + + + L  + 
Sbjct: 131 VPELI-QACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNRLWHDQ 189

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    H
Sbjct: 190 EPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKPH 243

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLM 184
           I++ TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P ++R   +
Sbjct: 244 IIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTYL 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L     
Sbjct: 304 FSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIG 363

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  I+F  T+A+  R + +     F   AL G+L+Q +R  +L + + G+  + +ATDVA
Sbjct: 364 KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDVA 423

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 424 ARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQ 469


>gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 541

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L L   L     +   A 
Sbjct: 23  AIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHLLQGRPGKNK-AG 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    I+V TPG
Sbjct: 82  QPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLDILVATPG 141

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FSAT S  I
Sbjct: 142 RLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFSATFSDEI 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    LV  S + + + ++++ +  +  ++F  T
Sbjct: 202 KALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQVLIFTRT 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R    L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 262 KHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAARGLDIDQL 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL +  E+ +HR GRTGRAG  G +V ++
Sbjct: 322 PQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLV 356


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 189/350 (54%), Gaps = 6/350 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++GY N T +Q   L   L  +D++  A+TGSGKT AF L +   ++ + +      
Sbjct: 197 AITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQEELGKGE 255

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ +  APTRELA Q+  E        G+ V+   GG+S   + ++L+ G  IVV TPG
Sbjct: 256 GPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCEIVVATPG 315

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FSAT+   +
Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVF 250
            TLA+      VRV      R + D+   A +VA +D D     +  + +   A + +VF
Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVA-TDADKLQWMLSKLPQMVDAGDVLVF 434

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST+  V    K L +  F+V AL G+  Q  R + LQ  + G+  V +ATDVAARG+D+
Sbjct: 435 ASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDI 494

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
             ++ V++ + + + +  +HR GRTGRAG K G++  ++ Q   R A  L
Sbjct: 495 KSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARFAGDL 544


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 181/332 (54%), Gaps = 9/332 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDRFSPASA 74
           Y   T +Q+  +   L ++DV+  A TGSGKT +F L + + L+ E     +      + 
Sbjct: 470 YKEPTPIQKYAIPAILAKRDVMACAXTGSGKTASFLLPIITNLMNEGLDNIDSNIDGVAL 529

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLA  +APTREL VQ+  E       + +   V  GGV+V  +   L+ G H++V TPGR
Sbjct: 530 PLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGR 589

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATIS 190
           L D I+   +N  +LK ++LDEAD+M+D+GF   IE I++ S  P K  R  LMFSAT  
Sbjct: 590 LEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEFSGMPPKGIRNTLMFSATFP 649

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +  D + + +       +D+    + V+ + +   + N+L+  G+   +VF
Sbjct: 650 DQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLENLLQTSGSDRTLVF 709

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +         L++  F   +L+ + +Q+ER +AL+  R+G A + +AT VAARG+D+
Sbjct: 710 VEKKRDADFLANFLSQKNFPATSLNADRTQEERESALKDFRNGIAPILVATAVAARGLDI 769

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            D++ VI+ +L  +    +HR GRTGR G KG
Sbjct: 770 NDVKHVINYDLPKDANEYVHRIGRTGRIGNKG 801


>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
 gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
          Length = 443

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 185/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +         + +GG + + + + L+     +V TPGR
Sbjct: 74  PRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPAI 193
           L DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAE 193

Query: 194 TTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
                N   DA  R+++   N QH DI  +  L    D   AI++ ++     +  ++F 
Sbjct: 194 VNGIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAEYRQVMIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RGID+P
Sbjct: 254 ATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDVASRGIDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 NVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ + +   G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F ++  + +     
Sbjct: 46  PELL-QGIYAYGFEQPSAIQQRAIRPILKGRDVIAQAQSGTGKTATFSISALNCV----- 99

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              PA+    AL ++PTRELA Q+ + +  L    GV    CIGGVSV  + + L  G H
Sbjct: 100 --EPATRETQALVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDYGQH 157

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I+ + L   ++K ++LDEADEML  GF++ I  I    P   ++++ S
Sbjct: 158 VVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVVIVS 217

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+   +  +   +  D +R+ +  +      I    + V   + + + + ++       
Sbjct: 218 ATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDLYDTLIIT 277

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V    + +A+  F V  + GE+ Q+ER   ++  R G  RV I TD+ A
Sbjct: 278 QAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLITTDLWA 337

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  + LVI+ +L  N EN +HR GR+GR GR G+++
Sbjct: 338 RGIDVQQVSLVINYDLPINRENYIHRIGRSGRFGRSGVAI 377


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + +  +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408


>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 526

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/360 (35%), Positives = 188/360 (52%), Gaps = 18/360 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF-SP 71
           AL   G     ++QE  L   L   D++  A+TG GKT  FG+ L   L+ AE+      
Sbjct: 42  ALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVPLLHRLVNAESTGLRGL 101

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC------------IGGVSVHRERR 119
            + P AL I PTREL VQV  +LE   A  GV V +              GG    ++  
Sbjct: 102 DNTPRALIIVPTRELCVQVTEDLE--VAAKGVDVTLTDGTVRPLKITSIYGGRPYEQQIE 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +LQ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE I+ + P  
Sbjct: 160 ELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEMLDLGFLPDIERIMGALPTD 219

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ ++FSAT+   I TLA+ +  +   +R   A+++  H             D+   +  
Sbjct: 220 RQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVYRAHAMDKAELVAR 279

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+  G    ++F  T+ +  +    LAE  F V A+ G+L Q  R  AL   R+G+  V
Sbjct: 280 VLQSEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKALNKFREGKIDV 339

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ ++  +   R E
Sbjct: 340 LVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGIAITLVDWDELHRWE 399


>gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 451

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 24/362 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDR 68
           I  +L + G+ + T +Q   L   LR KD+   AQTG+GKT  F LA    L+  AE+D 
Sbjct: 20  ILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQHLINDAEDDA 79

Query: 69  FSPASA--------------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            +  +A                    P A+ +APTRELA+Q+ ++   L     + +A+ 
Sbjct: 80  EAQTNADIETEKTAPNVVAKSKQIKYPRAIILAPTRELAIQIHKDALQLGKHLNLKLALI 139

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG    ++   L++   I++GTPGR+ D  R     + ++K  V+DEAD M DLGF  D
Sbjct: 140 YGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEADRMFDLGFIKD 199

Query: 169 IEFILD--SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           I F+L     P++R  ++FSAT+S  +T LA  +  + V + I +E      I   A   
Sbjct: 200 IRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNNPVLIRIETEEVTSKAIQQSAFCP 259

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +   +   +V IL  H  + +I+F +T+    R    L  + ++  ALSG++ Q +R   
Sbjct: 260 SNEQKIPLLVGILNQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAALSGDVPQDKRQRL 319

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   ++ +  + IATDVAARG+ + D+  VI+ +L  + E+ +HR GRT R G  G+++ 
Sbjct: 320 LSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIGRTARFGASGVAIS 379

Query: 347 VI 348
            I
Sbjct: 380 FI 381


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 190/330 (57%), Gaps = 11/330 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  +DV+  A+TGSGKT AFG+     L++  D  +   +   L I+PTRELA Q    L
Sbjct: 161 LSGRDVIGVAETGSGKTFAFGVPAIDQLVSNGD--AKRKSVKVLVISPTRELASQTYDNL 218

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+N + +VV TPGRL D I  + +++S ++ +VL
Sbjct: 219 IILTNKVGLECCCVYGGVPKQEQRNQLRN-SQVVVATPGRLLDLINEQSVDLSQVQYLVL 277

Query: 155 DEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I++ ++ + R+ LMF+AT    +  LA  + +D V+V+I + +
Sbjct: 278 DEADRMLEKGFEEDIKNIINQTNSRDRQTLMFTATWPKEVRELASTFMRDPVKVSIGNRD 337

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAE 266
              ++     ++  +  R  D  ++ +LR +  GAK     ++F   +   SR    L  
Sbjct: 338 ELSANKRITQIVEVIEPRQKDRKLLELLRKYQSGAKKDDKVLIFALYKKEASRVENNLKY 397

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R++AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 398 NGYDVAAIHGDLSQQQRTSALNDFKAGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 457

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +HR GRTGRAG+ G +  +   N +  A
Sbjct: 458 DYVHRIGRTGRAGQTGTAHTLFTDNEKHLA 487


>gi|259483726|tpe|CBF79353.1| TPA: ATP-dependent RNA helicase dbp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AWA6] [Aspergillus
           nidulans FGSC A4]
          Length = 413

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 10/324 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T++Q A        +DV+  A+TGSGKT+AFGL     +L    +   +  PLA+
Sbjct: 92  GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSCRPLAV 150

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA+Q+  +L     K  + VA   GGV    +R  L++ A +VV TPGRL D 
Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDL 209

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197
                L++  +K +VLDEAD MLD GF  DI+ I+   P  KR+ +MF+AT  P +  LA
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269

Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIV-F 250
             +    V V I    +++ R +S I     +V   +++  +V IL  H  G  + ++ F
Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +    R  ++L    F+V  + G+LSQQER  +L+  + G A V +ATDVAARG+D+
Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389

Query: 311 PDLELVIHAELSSNPENLLHRSGR 334
           P ++LV++       E+ +HR GR
Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGR 413


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 181/343 (52%), Gaps = 8/343 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + +         
Sbjct: 24  ALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSGTAARPLNG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127
            P AL + PTREL +QV  +L    + L A  G  + V    GG     +   L+ GA +
Sbjct: 84  TPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALRAGADV 143

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ ++FSA
Sbjct: 144 VVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPVDRQSMLFSA 203

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   I TLA+ +  Q   +R         H      A      D+   +  IL+  G  
Sbjct: 204 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVELVSRILQAEGRG 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +  +    LAE  F V A+ G+L Q  R  AL+  R G   V +ATDVAA
Sbjct: 264 ATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 324 RGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLV 366


>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 481

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 177/340 (52%), Gaps = 1/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  AL E  Y+  T +Q   +   +  +DV+  AQTG+GKT +F L +   LL    +
Sbjct: 17  EAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIHRLLENRIK 76

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P +  + L ++PTREL+ Q+            +  A+ IGGV + R+ R +  G  ++
Sbjct: 77  PQPKTCRV-LVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQVRSIMPGLDVL 135

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D ++   L ++ ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT
Sbjct: 136 VATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSAT 195

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA    +D  RV +         I  R + V  S +   +  IL+      A+
Sbjct: 196 MPKDIADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAKPTLLAQILKQENVNRAL 255

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+    +  K LA       A+ G  SQ  R   L   R G  R  +ATD+AARGI
Sbjct: 256 IFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTLVATDIAARGI 315

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  +  V++ +L + PE  +HR GRT RAG +G+++ ++
Sbjct: 316 DVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLV 355


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 15/360 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 59  GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L    +K  VLDEADEML  GF+D I  I    P+K ++ +FSAT+ P    + +
Sbjct: 173 LRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +    V++ +  +      I    V V   DR+    + + ++        +++F +TR
Sbjct: 233 KFMNKPVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTR 289

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 290 RKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R  + + R  N  V  E  PS
Sbjct: 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYNTVV--EELPS 407


>gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 428

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 200/383 (52%), Gaps = 22/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I +A+   GY  LT VQ  ++   +   D++  A+TG+GKT AF L L   LL  
Sbjct: 7   DLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLLQKLL-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F   SA   L + PTRELA+QV   +      T +      GG +++ +R+ L  G 
Sbjct: 65  -DEFLDRSALRGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRKALNAGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I   GL++S + ++V+DEAD MLD+GF  DIE +     ++     F
Sbjct: 124 DILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQHVTHFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  LA+    D   +N+A+ ++  S ++    LV    +   +  ++  +  +
Sbjct: 184 SATYSDDVKCLAQKMLCDPTWINVAT-SKSASSVEQEVYLVDKRRKAELLSELVGRNNWQ 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S++ S     K L     +     G+ +Q  R+ AL+  + G  RV +ATDVAA
Sbjct: 243 QVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREAN 364
           RG+D+  L LV++ EL  + ++ +HR GRTGRAG  G ++ FV P +     E++  E  
Sbjct: 303 RGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSD-----EKMLEE-- 355

Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387
                     +EA+ ER   RI+
Sbjct: 356 ----------IEALIERKLPRIV 368


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score =  191 bits (485), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 22/395 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + +   GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 106 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP- 164

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +           P+AL +APTRELA Q+ +++   +  T  V   C+ G +  RE+
Sbjct: 165 AIVHINNQPPIRRGDGPIALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQ 223

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 224 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 283

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ LM+SAT    +  LA++Y  D +++NI S     +    + V +         +N
Sbjct: 284 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLN 343

Query: 238 IL-------RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +L       +  GAK  I+F  T+      ++ +  + +  V + G+ +QQER   L   
Sbjct: 344 VLLQEIGQSQEPGAK-TIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 402

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           ++GRA + +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S  F  P
Sbjct: 403 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 462

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRER 381
            N  R+A+ L    +EAN  +    +P ++++ +R
Sbjct: 463 SN-SRQAKDLVSVLQEANQII----SPQLQSMADR 492


>gi|328772390|gb|EGF82428.1| hypothetical protein BATDEDRAFT_29496 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 508

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/352 (35%), Positives = 195/352 (55%), Gaps = 18/352 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG---LALASTL 62
           N P  +   LSE  +   + +Q     P L  +D++  A TGSGKT+AFG   L      
Sbjct: 92  NFPTKLHSILSE--FPAPSFIQSVTWPPILNGRDLVGIAATGSGKTLAFGVPALLHIQNC 149

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
           LA N        PL L ++PTRELA+Q+  +        GV  +VCI GG+    +++ L
Sbjct: 150 LALNTL--QKGKPLTLVLSPTRELAMQIQDQFVQFGQAIGVK-SVCIYGGMPKWEQKKLL 206

Query: 122 QNGAHIVVGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
           Q G H++V TPGRL D      +  ++S +K +VLDEAD MLD+GF + I  I+   P  
Sbjct: 207 QQGMHVIVATPGRLIDLFEEDDRTCDLSQVKYLVLDEADRMLDIGFEEAIRKIIKKLPTA 266

Query: 178 -KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAI 235
            + R+ +MFSAT   +I  +A +Y  + V+V + S +   +  I+ R  ++    ++  +
Sbjct: 267 AQGRQTVMFSATWPQSIQRMAMSYLNNPVKVTVGSTDLSANISIEQRVEVLDPFAKETRL 326

Query: 236 VNILR-YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + +LR YH ++    ++F   +   SR  + L  + + V ++ G+LSQ +R+ A+   R 
Sbjct: 327 LQLLRDYHKSRTNRILIFALYKKEASRLDQFLKRNGYNVASIHGDLSQVQRTAAIDGFRS 386

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           G+  + IATDVAARGID+P++E VI+       E+  HR GRTGRAG+ G+S
Sbjct: 387 GKIPLLIATDVAARGIDIPNVEYVINVTFPLTVEDYCHRIGRTGRAGKTGIS 438


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 186/363 (51%), Gaps = 7/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   +++Q       L  +D++  A+TGSGKT+ F L  A   +   
Sbjct: 137 FPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALP-AMVHINAQ 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+AL +APTRELA Q+  E       + +      GGV    + RDLQ GA 
Sbjct: 196 PLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAE 255

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+  +  +V+DEAD MLD+GF   I  IL      R+ LMFS
Sbjct: 256 ICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFS 315

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++  +  +VNI S E   + ++     +    ++   ++  L    A+
Sbjct: 316 ATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIGHLETISAE 375

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           N   I+F ST+      TK L +  +  +A+ G+  QQER   L   + GR+ + +AT V
Sbjct: 376 NGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAV 435

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER--LF 360
           A+RG+D+ D+  VI+ +  +N E+ +H+ GRTGRAGR G +  +  P+N +   E   + 
Sbjct: 436 ASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELIGIL 495

Query: 361 REA 363
           REA
Sbjct: 496 REA 498


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 199/380 (52%), Gaps = 17/380 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + +A+   GY   T++Q       L+  D++  A+TGSGKTVAF L      +AE  
Sbjct: 10  PKPLLDAVKRAGYTEPTAIQSQSWPIALQGYDMISVAKTGSGKTVAF-LFPGLMHIAERG 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
               A  P+ LA+APTRELA Q+  E     +  GV      GG    R+ + L+N   I
Sbjct: 69  NGRNARGPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQLRNRPQI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            + TPGRL D +  + +++S    VVLDEAD MLD+GF   I  IL   P  R+ L F+A
Sbjct: 129 CIATPGRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDRQTLFFTA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRY--HG 243
           T   A+  +A     + ++VNI   ++  ++ D    +   S  +++  ++ IL     G
Sbjct: 189 TWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQTIEVCSGFEKEKRLMEILNNPPEG 248

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VFCST+    +  + +  +L  ++   G+  Q+ER   L   R GR  V +AT
Sbjct: 249 CDPLKALVFCSTKRMCDQLGRSVG-NLAGII--HGDKEQRERDWILNQFRQGRTPVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAER 358
           DVAARG+D+ D  LVI+ +  +  E+ +HR GRTGRAG+KG +   I     NM R+   
Sbjct: 306 DVAARGLDVKDCNLVINYDFPNQIEDYVHRIGRTGRAGKKGWAFSFIDGGEGNMARKLIP 365

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + R+AN  V    +P +E +
Sbjct: 366 ILRDANQIV----SPEIEEM 381


>gi|108799132|ref|YP_639329.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119868247|ref|YP_938199.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126434738|ref|YP_001070429.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108769551|gb|ABG08273.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119694336|gb|ABL91409.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
 gi|126234538|gb|ABN97938.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 444

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 192/368 (52%), Gaps = 8/368 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG  +   +Q A L   L  +DVL   +TGSGKT+AF L L S L A+  R S  S 
Sbjct: 20  LENRGIDSPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSLPLVSRL-ADAKRRS--SR 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA Q+   LE L A   + VA   GGVS + +   L+ G  IVV  PGR
Sbjct: 77  PSGLVLAPTRELATQITAVLEPLAAAYDLKVATIFGGVSQNPQASALRAGVDIVVACPGR 136

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +R + +++  ++  VLDEAD M DLGF   +  IL ++P   + L+FSAT+   + 
Sbjct: 137 LEDLMRQRIISLDSVEITVLDEADHMADLGFLPGVTRILAATPAGGQRLLFSATLDNGVD 196

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L + + ++ V  ++   N     + +    VA +    A+V+ L   G    I+F  T+
Sbjct: 197 KLVRRFLREPVTHSVDEVNAPPPAMTHHVFHVAGAHEKKALVHTL-AAGTGRRILFMRTK 255

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  + L E     V L G LSQ  R   L     G A+V +ATD+AARG+ + ++E
Sbjct: 256 HQARKLARQLTESGVPSVDLHGNLSQNARERNLAAFSAGDAKVLVATDIAARGVHVDEVE 315

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV----VWE 370
           LV+H +     +  LHRSGRT RAG  G  V V+    +R    L R A ++V    V  
Sbjct: 316 LVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTVVLPEERRDTAALLRRAGINVAPQQVGA 375

Query: 371 PAPSVEAI 378
            +PSV A+
Sbjct: 376 DSPSVAAL 383


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI++ +L     +  I+F 
Sbjct: 194 VNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T+ L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 254 ATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350


>gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54]
 gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea
           psychrophila LSv54]
          Length = 498

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 183/342 (53%), Gaps = 3/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   +++  +   T +QE  L   L  KD++  A TG+GKT  F + + + LLA+ 
Sbjct: 101 IPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVMARLLADK 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125
                   P AL +APTREL +Q+ ++ + L   TGV      GG    ++   L+ G  
Sbjct: 161 KGGLGKRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQMELLKRGKT 220

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR--RML 183
            IVV TPGRL D    + +N  + + +V+DEAD MLD+GF  D+  I+   PKKR  + L
Sbjct: 221 DIVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSWMPKKRDRQTL 280

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSATIS  +  L+  +  D   V   ++      ++ +  LV   ++ N + N+++ + 
Sbjct: 281 MFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYNVLYNLIKENS 340

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F + ++   +    L  +    + LSG++ Q +R + L+  R G+ +V +ATDV
Sbjct: 341 DERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKVKVLVATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A RGI +  +  V++  L   PE+ +HR GRTGRAG  G SV
Sbjct: 401 AGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGRAGLAGKSV 442


>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 594

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 192/345 (55%), Gaps = 12/345 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ EA S  G+   T +Q   +   L  +D++  A+TGSGKT +F L +   LL + 
Sbjct: 154 VPSLV-EACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQKLLEKP 212

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L    H
Sbjct: 213 QPL------FALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPH 266

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGR+ DH+   KG    +LK +++DEAD +L++ F ++++ IL + PK+R   ++
Sbjct: 267 ILIATPGRIVDHLENTKG----YLKFLIMDEADRILNMDFEEEVDKILKAIPKERNTYLY 322

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V++ +A++ +    +  + + +    +D  +   L      
Sbjct: 323 SATMTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARFKDCYLTYALNQLAGN 382

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+F  T A+  R   +L    F  + L G+L+Q +R  AL   ++    + +ATDVA+
Sbjct: 383 STIIFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVATDVAS 442

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 443 RGLDIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQ 487


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 191/379 (50%), Gaps = 10/379 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + +       S
Sbjct: 20  TLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWVREENS 79

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QV   ++     T + +    GG S+  +   L+ G  I++ TP
Sbjct: 80  KEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATP 139

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L FSAT    
Sbjct: 140 GRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFFSATFDSK 199

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A    +D   V +   N     +      V    +   +  ++     +  +VF  
Sbjct: 200 IKAVAYRIMRDPAEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLVFTK 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAARG+D+  
Sbjct: 260 TRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLDIAQ 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV---- 368
           LE V++ ++    E+ +HR GRTGRAG  G++V ++  +   + E + R  N  +     
Sbjct: 320 LEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQLEAIERLLNTRLPQEWL 379

Query: 369 --WEPAPSVEAIRERDAQR 385
             +EP+P V   RE ++ R
Sbjct: 380 KGFEPSPEV---REENSPR 395


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 11/349 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQE  +   L  KD++  AQTG+GKT A+ L + + L   +    P  A  A+ +APT
Sbjct: 7   TPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPTDAVNAVIMAPT 63

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA Q+ ++++        V AV +     G++  +++R L+ GA IV+ TPGRL  HI
Sbjct: 64  RELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPGRLLSHI 123

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   +++S +   VLDEAD MLD+GF DDI  +    P   + +MFSAT+ P I TLAK 
Sbjct: 124 KLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKIRTLAKT 183

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             KD   V IA  +R    I   A +     +   + ++      +  I+F S++  V  
Sbjct: 184 ILKDPEEVKIAI-SRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKE 242

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L    F V A+  +L Q +R   ++  + G   + +ATDV ARGID+ D++LV++ 
Sbjct: 243 LASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNF 302

Query: 320 ELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL--FREANV 365
           ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+  F E  V
Sbjct: 303 DIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEV 351


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 15/360 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 59  GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L    +K  VLDEADEML  GF+D I  I    P+K ++ +FSAT+ P    + +
Sbjct: 173 LRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +    V++ +  +      I    V V   DR+    + + ++        +++F +TR
Sbjct: 233 KFMNKPVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTR 289

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 290 RKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R  + + R  N   V E  PS
Sbjct: 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYN--TVIEELPS 407


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A           EN R
Sbjct: 239 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR 298

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL+L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 299 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 358

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ +
Sbjct: 359 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 418

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 419 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 478

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 479 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 538

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E
Sbjct: 539 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 586

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 587 KNINIT 592


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/350 (35%), Positives = 189/350 (54%), Gaps = 6/350 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++GY N T +Q   L   L  +D++  A+TGSGKT AF L +   ++ + +      
Sbjct: 197 AITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQEELGKGE 255

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ +  APTRELA Q+  E        G+ V+   GG+S   + ++L+ G  IVV TPG
Sbjct: 256 GPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCEIVVATPG 315

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FSAT+   +
Sbjct: 316 RLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRRV 375

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVF 250
            TLA+      VRV      R + D+   A +VA +D D     +  + +   A + +VF
Sbjct: 376 ETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVA-TDADKLQWMLSKLPQMVDAGDVLVF 434

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST+  V    K L +  F+V AL G+  Q  R + LQ  + G+  V +ATDVAARG+D+
Sbjct: 435 ASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVAARGLDI 494

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
             ++ V++ + + + +  +HR GRTGRAG K G++  ++ Q   R A  L
Sbjct: 495 KSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAGDL 544


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 188/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           G+ + +++Q   +    + +D +  AQ+G+GKT  F +++     T L E          
Sbjct: 44  GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQ-------- 95

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  +     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 96  -ALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 154

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEAD++L  GFR+ I  +    P   ++++ SAT+   + +
Sbjct: 155 ADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLS 214

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 215 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 274

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 275 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 335 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 374


>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
 gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
          Length = 454

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 185/339 (54%), Gaps = 4/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L +   LL+        
Sbjct: 37  EACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQELLSNR---QAE 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++   +    HIVVGTP
Sbjct: 94  QSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGKRPHIVVGTP 153

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++  +K +VLDEAD++L++ F   ++ IL   PK RR  +FSAT++ 
Sbjct: 154 GRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPKDRRTFLFSATMTK 213

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++  +V  AS+      +      V   D+D  ++++L        ++F 
Sbjct: 214 KVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHVLNERQDSMIMIFV 273

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S      +L     + +++SG++SQ +R  AL   +     + I TDVA+RG+D+ 
Sbjct: 274 RTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILICTDVASRGLDIQ 333

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q
Sbjct: 334 GVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQ 372


>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
          Length = 425

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 181/342 (52%), Gaps = 7/342 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL----ASTLLAEN 66
           I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L       +L   
Sbjct: 12  IINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLHYYPKIVLKAL 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F    A   L + PTRELA QV   +        +   V  GGVS++ +++ L+    
Sbjct: 72  QCFLTIRA---LILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGRVD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F 
Sbjct: 129 ILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLFF 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA         + +A  N     +  +   +    + + + +++R      
Sbjct: 189 ATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWYQ 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+AAR
Sbjct: 249 VLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++
Sbjct: 309 GLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLV 350


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 188/341 (55%), Gaps = 17/341 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPL 76
           Y+  T VQ+  +   LR +D++  AQTGSGKT AF L + + ++        FS A  P 
Sbjct: 320 YLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPVLTGMIKSGLSGSSFSEAVEPQ 379

Query: 77  ALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL I PTRELA+Q+  E L++ Y+ T +   VC GG SV  + R+L  G +++V TPGRL
Sbjct: 380 ALVITPTRELALQIHHEALKFAYS-TILRPVVCYGGTSVQHQLRELSRGCNLLVATPGRL 438

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATIS 190
            D + GKG + +  LK ++LDEAD MLD+GF  +I  ++ S    S + R+ LMFSAT  
Sbjct: 439 LDFV-GKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVASPNMPSKEDRQTLMFSATFP 497

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL-----RYHGA 244
             I  LA ++  D + + +        DI+   V + +   +   ++ IL      + G 
Sbjct: 498 EEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQKKEKLMEILIDVISSFPGT 557

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+ S       L++  F   ++ G+  Q+ER  AL   + G   V +AT VA
Sbjct: 558 EKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREEALSCFKRGETPVLVATSVA 617

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P ++ V++ +L  N +  +HR GRTGR G  G +V
Sbjct: 618 ARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAV 658


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 177/337 (52%), Gaps = 4/337 (1%)

Query: 11  IGEALSERGYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +AL+ +GY   T +Q EAI  P L E  D+L  AQTG+GKT AF + +  +L      
Sbjct: 65  IQKALAAQGYSEATPIQAEAI--PHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGL 122

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL +APTRELA Q+            +   V  GGV    + R L+ G  I+
Sbjct: 123 LKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDIL 182

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    +++SH++  VLDE D+MLD+G   D++ I+   P++R+ ++FSAT
Sbjct: 183 VATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSAT 242

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA    K  V++ +  E      I+     V  +++   +   L+ +   + +
Sbjct: 243 MPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVL 302

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K L +  F  VA+ G  SQ  R  AL   +  + R+ +ATD+AARG+
Sbjct: 303 VFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGL 362

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ +L  VI+  L   PE  +HR GRTGRAG  G ++
Sbjct: 363 DIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAI 399


>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 2/341 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + +AL    +   T +Q   +   L   D++ SAQTG+GKT AF L + + L+  
Sbjct: 7   SLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAKLMGL 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL + PTRELA+QV + +      T +   +  GGVS+  + + L  G 
Sbjct: 67  AQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQLAAGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R     +  +  +V DEAD MLD+GF D+I  ++   P +R+ L+F
Sbjct: 127 DLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSERQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-A 244
           SAT+   +  L+  + K   R+ ++ +N    D++ R   V  S+R  A+++ L   G  
Sbjct: 187 SATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVD-SERKFALLSHLINKGDW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF   + +  +    L E      A  G+L Q  R   L   R G  +V +ATDVA
Sbjct: 246 QRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+  L+ V++ EL    ++ +HR GRTGRAG++G++V
Sbjct: 306 ARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAV 346


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 181/337 (53%), Gaps = 15/337 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+A         
Sbjct: 210 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAAGSFGRTRK 269

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 270 AYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATP 329

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++       + R+ LMFSAT
Sbjct: 330 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSAT 389

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD V +++        +I  +   V   D+ + +++IL  HGA   +
Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHGAGLTL 449

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT VAARG+
Sbjct: 450 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 509

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 510 DIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 182/339 (53%), Gaps = 4/339 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+  R  
Sbjct: 12  ILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKGPRVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A+   AL + PTRELA QV +E  ++Y++   +  AV  GGV ++ +   L+ GA ++V
Sbjct: 71  -ANHIRALILTPTRELAAQV-QENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGADVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +    L+ ++LDEAD MLD+GF  DI  IL   P KR+ L+FSAT 
Sbjct: 129 ATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFSATF 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LAK    + + +++   N     ++       +  +   +  ++     +  +V
Sbjct: 189 SDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLINDGDWRQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 249 FTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +P L  V++ EL    E+ +HR GRTGRAG  G ++ ++
Sbjct: 309 IPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLV 347


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 185/341 (54%), Gaps = 1/341 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    +  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +N +        A+ +APTRELA Q+   ++     T +      GG  +  +++ L+ G
Sbjct: 65  DNAKPRQRHQARAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +H+    +++ +L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  + TLA    +   RV++A EN     + +    V    +   +  ++     
Sbjct: 185 FSATFSAQMNTLATKILRQPKRVSVARENATAETVAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   + G+ARV IATDVA
Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAV 345


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/354 (33%), Positives = 186/354 (52%), Gaps = 16/354 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E G  +  ++Q   L   +   D++  A+TG GKT+ FG+ L   +    D
Sbjct: 3   PEIV-KALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGD 61

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTREL +QV  +L+      G+      GG     +   L+ G  +
Sbjct: 62  -----GTPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDV 116

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGRL D    + L +  ++ +VLDEADEMLDLGF  DIE IL   P +R+ ++FSA
Sbjct: 117 VIGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSA 176

Query: 188 TISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNILRY 241
           T+   I TLA+ +      +  A EN       + +   YRA  +   D+   I   L+ 
Sbjct: 177 TMPGPIITLARTFLNQPTHIR-AEENDAGAIHERTAQFVYRAHSM---DKTELIARALQA 232

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V +AT
Sbjct: 233 EGRGLTMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVAT 292

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           DVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ ++  + + R
Sbjct: 293 DVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEEAR 346


>gi|260941746|ref|XP_002615039.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
 gi|238851462|gb|EEQ40926.1| hypothetical protein CLUG_05054 [Clavispora lusitaniae ATCC 42720]
          Length = 533

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 179/319 (56%), Gaps = 15/319 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L +KDV+  A+TGSGKT AFG+   + +L E  +         L ++PTRELA+Q+   L
Sbjct: 156 LSQKDVIGVAETGSGKTFAFGVPAVNNILKEKKQ-----GLKVLCLSPTRELALQIYDNL 210

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
           E L   TG+      GGVS   +   L+  A I V TPGRL D +    +++S +  +VL
Sbjct: 211 ELLTKATGISCVAVYGGVSKMDQIEKLKT-ASIAVATPGRLVDLLEDGLVDLSSVDYLVL 269

Query: 155 DEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           DEAD MLD GF + I+ I+  +P K  R+ LMF+AT    +  LA  +    V+V I   
Sbjct: 270 DEADRMLDKGFEEHIKQIIGHTPAKAQRQTLMFTATWPKEVRELAAEFMTSPVKVTIGER 329

Query: 213 NRQHSDIDYRAVLVALSDRDN--AIVNILR-YHGAKN----AIVFCSTRASVSRFTKVLA 265
           +   ++     ++  +  RD    +V +LR Y    N     ++F   +   SR   +L 
Sbjct: 330 DELSANKRITQIVEVIDPRDKERKLVQLLRKYQSGSNRNDKVLIFALYKKEASRVEGLLQ 389

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              F+V A+ G+LSQQ+R++AL   + G + + +ATDVAARG+D+P++++VI+       
Sbjct: 390 RSGFKVAAIHGDLSQQQRTHALGQFKSGESNLLLATDVAARGLDIPNVKVVINLTFPLTA 449

Query: 326 ENLLHRSGRTGRAGRKGMS 344
           E+ +HR GRTGRAG+ G++
Sbjct: 450 EDYVHRIGRTGRAGQTGIA 468


>gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae]
          Length = 732

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 185/367 (50%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
            P  +  A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    T L 
Sbjct: 310 FPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 369

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   +   P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 370 KIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKLRM 429

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ IL+  P      
Sbjct: 430 GVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNMKK 489

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+SPAI  LA+ Y +    V+I +  +    
Sbjct: 490 DTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPTER 549

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    ++    +   ++ ++  H     IVF + +       K LA+   +   L G  
Sbjct: 550 VEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHGGK 609

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q  R  AL+ ++D   ++ +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 610 GQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 669

Query: 339 GRKGMSV 345
           G+ G ++
Sbjct: 670 GKHGKAI 676


>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 435

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 185/342 (54%), Gaps = 16/342 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT AF L +   L         AS
Sbjct: 15  AIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQRL--------NAS 66

Query: 74  APL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           AP+      AL + PTRELA QV + +      T +  AV  GGV ++ +   L+ G  I
Sbjct: 67  APIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQLRRGVDI 126

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ TPGRL D + G+G ++   L+ +VLDEAD MLD+GF  DI  IL   P +R+ L+FS
Sbjct: 127 LIATPGRLLD-LHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  L K + +D + V +AS N     ++     V    +   +  ++       
Sbjct: 186 ATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPVDKKRKGALLRELVEEKCWTQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL+  + GR RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  L  V++ +L +  ++ +HR GRTGRAG  G +  ++
Sbjct: 306 GLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLV 347


>gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 502

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 192/364 (52%), Gaps = 7/364 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL+ +G      +Q A L   L  +DVL   +TGSGKT+AFGLA+   L   
Sbjct: 79  DMPEQLLAALAAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAM---LAGT 135

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 136 AGKRAEPRLPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQAGALRSGA 195

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I+     +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 196 EVVVATPGRLKDLIQRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML- 254

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 255 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVDSADKHATTTEIAARDG- 313

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R TK L     +   L G  SQ +R+  L   + G   V +AT+VA
Sbjct: 314 -RVIMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFKSGHVTVLVATNVA 372

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 373 ARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRRDMARLLTHAG 432

Query: 365 VSVV 368
           V  V
Sbjct: 433 VRPV 436


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|311897074|dbj|BAJ29482.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 487

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/354 (34%), Positives = 186/354 (52%), Gaps = 5/354 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ RG  +   +Q A L   L  +DVL   +TGSGKT+AFGLA+ +    +    +    
Sbjct: 61  LARRGVTSPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAVLARTTGQQ---AEPRQ 117

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLAL + PTRELA QV   L        + +A  +GGV V R+ + L  GA IVV TPGR
Sbjct: 118 PLALVLVPTRELAQQVTEALTPYAHAAKLRMATVVGGVPVRRQAQVLNRGAEIVVATPGR 177

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D I  +   +  +   VLDEAD+M D+GF  D+  +L+   +  + ++FSAT+   + 
Sbjct: 178 LGDLIERRLCRLDRVAVTVLDEADQMTDMGFLPDVTALLEQVAEGGQTMLFSATLDRNVD 237

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +L + + KD V  ++         +++  + V  +D+D  I +I    G    I+F  T+
Sbjct: 238 SLVRRFLKDPVTHSVDPSAGAVGTMEHHVLHVRGADKDATIAHIASRDG--RVIMFTDTK 295

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R    L  +  +  AL G  SQ +R+  L+  R G     +ATDVAARGI +  L+
Sbjct: 296 HGADRLVAALLANGVKAAALHGGKSQPQRTRTLEQFRGGLVDALVATDVAARGIHVDGLD 355

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+   A ++ V
Sbjct: 356 LVVNLDPPADHKDYLHRGGRTARAGESGTVVTLVLPNQRRGTARMLATAGITPV 409


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 181/337 (53%), Gaps = 5/337 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T VQE  +   L  +D++ +A+TG+GKT AF L     L    D      
Sbjct: 38  AVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLDQLRYRAD----DE 93

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            PL + + PTRELA Q+      +  +T     V +GGV    + + L+ GA I++ TPG
Sbjct: 94  GPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRAGADIIIATPG 153

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +R    ++ +++ +VLDEAD MLD+GF   +  I+D+ P +R+ L+FSATI  + 
Sbjct: 154 RLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAERQTLLFSATIDRSQ 213

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +  +  KD   + IA        ID   +      +   + + +R  G    IVF  T
Sbjct: 214 DKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVRERGGFRVIVFTRT 273

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      TK L +      A+  + SQ +R+ AL   R+G+  V +ATDV +RGID+P++
Sbjct: 274 KGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVATDVLSRGIDVPEV 333

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           + VI+ +L   PE+ +HR GRTGRAG +G +V FV P
Sbjct: 334 DYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTP 370


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 4/345 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   PQV+ EAL   G+ + T +Q   L   L  KD+   AQTG+GKT+AF +A    LL
Sbjct: 14  FPLAPQVV-EALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFHELL 72

Query: 64  AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +         +P AL +APTRELA+Q+ ++ E L   TG+ + +  GG     +R  L+
Sbjct: 73  KQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRATLE 132

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  I++GT GRL D+ +     ++ ++ +VLDEAD M DLGF  DI ++     +P +R
Sbjct: 133 AGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPAER 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   ++ ++ 
Sbjct: 193 RNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELFYPSNDDKMRLLLTLIE 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+F +T+         +A    +V  L+G++ Q++R   L+  + G     +A
Sbjct: 253 EDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGEVDFLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 313 TDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSI 357


>gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 538

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L L   L     +   A 
Sbjct: 23  AIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLLHLLQGRPGKNK-AG 81

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    I+V TPG
Sbjct: 82  QPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLDILVATPG 141

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FSAT S  I
Sbjct: 142 RLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFSATFSDEI 201

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     ++    LV  S + + + ++++ +  +  ++F  T
Sbjct: 202 KALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQVLIFTRT 261

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R    L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+  L
Sbjct: 262 KHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAARGLDIDQL 321

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ EL +  E+ +HR GRTGRAG  G +V ++
Sbjct: 322 PQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLV 356


>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
 gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 198/343 (57%), Gaps = 10/343 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G  + T VQ+  +   L  +D+ V ++TGSGKT+AF +     ++ +     P S 
Sbjct: 25  LAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQRIIKQK----PLSK 80

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ I PTRELA QV  +L  L A + +V    +GG + + + + L+   H++V TP
Sbjct: 81  RDPRAVIITPTRELANQVFAQLRLLVAGSNIVATKILGGDNFNDQIKALKKDPHVIVATP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPKKRRMLMFSATISP 191
           GRL DHI+ K   ++ L+ +++DEAD ++DLGF+ +I+ I  +++ + R+ L+FSAT+  
Sbjct: 141 GRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINTEANHRLRQTLLFSATLEH 200

Query: 192 A-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249
           + I  L++N  K   +V ++  N +H+DI         L  ++  + + L        IV
Sbjct: 201 SQIDALSRNLLKSPKKVTLSQSNEEHTDITQNMFFADNLLHKEALLAHFLSKPNIGQCIV 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR    R +++++       AL+G++ Q +R + +     G+++V I TD+A+RG+D
Sbjct: 261 FTATREDTYRLSELISGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQVLITTDIASRGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           L ++  VI+ +L    E  +HR GRTGRAG KG ++ FV P++
Sbjct: 321 LLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKD 363


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 187/338 (55%), Gaps = 13/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  TL  +           AL
Sbjct: 45  GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQTLDTQ------VRETQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 99  ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 159 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+ +  +      I  +   VA+   +   + ++++        A++FC+TR 
Sbjct: 219 KFMTDPIRILVKRDELTLEGI--KQFFVAVDKEEWKFDTLIDLYDTLTITQAVLFCNTRR 276

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + L
Sbjct: 277 KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSL 336

Query: 316 --VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             VI+ +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 337 VSVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 374


>gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 433

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 190/342 (55%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65
           PQV+ E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVV-EGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A+TG+  A+  GG S  ++   L+ G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLAKLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   + + +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMSLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 7/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 117 FPDYVLKEVKAEGFAAPTGIQCQGWPMALSGRDMVGVAATGSGKTLSYCLPAIVHINAQ- 175

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E    + ++  +   C+ GGV   ++ RDL  GA
Sbjct: 176 PLLAPGDGPVVLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPRGQQIRDLARGA 234

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 235 EIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 294

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVNILRY 241
           SAT    +  LA++Y  D ++V I S     S    + V V       DR +  + I   
Sbjct: 295 SATWPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSKHLEIASE 354

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF ST+ +    T+ L +  +  +A+ G+  Q+ER   L+  ++GR+ + +AT
Sbjct: 355 DQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGRSPIMVAT 414

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG KG ++
Sbjct: 415 DVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGAKGTAI 458


>gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|12381900|dbj|BAB21260.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 413

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 190/355 (53%), Gaps = 8/355 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVECQAL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTR-KV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV +   PA
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPA 407


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 216 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENG 274

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 275 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 334

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 335 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 394

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 395 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEPDKRSFLLDLLNAT 454

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 455 GKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 514

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 515 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 562

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 563 ERNINIT 569


>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 432

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 185/348 (53%), Gaps = 9/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L ++G    T +QE  +    +  D++  AQTG+GKT+AF L +   +       +   
Sbjct: 16  TLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQRI------HTDVH 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTREL  Q+  E + L A   V +   IGG ++  + + L    H+++GTPG
Sbjct: 70  QEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRRPHVILGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   I
Sbjct: 130 RLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLLFSATIPDKI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK Y    V V    ++     ID R  ++   D+   ++ +++      AIVFC+ 
Sbjct: 190 RNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNK 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  +
Sbjct: 250 REGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGI 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAER 358
             V + ++  + +  +HR GRTGRAG  G++V F  P  ++  RR ER
Sbjct: 310 THVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 183/336 (54%), Gaps = 11/336 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQVI------DTAVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVIMGLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      +  +   +A+   +   + + ++        A++FC+TR 
Sbjct: 218 KFMTDPVRILVKRDELTLEGL--KQYFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRR 275

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q+ER + +Q  R   +RV I+TDV ARGID+  + L
Sbjct: 276 KVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSL 335

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VI+ +L SN EN +HR GR+GR GRKG+++  + Q+
Sbjct: 336 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQD 371


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 187/343 (54%), Gaps = 13/343 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           Q + +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   L+ +   
Sbjct: 10  QDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIEKPKS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF+      AL +APTRELA Q+   +      T V      GG  +  + + L+ G 
Sbjct: 70  KSRFNVR----ALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKRLEQGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL +H+    +++++L+ +V DEAD MLD+GF   I  ILD    K + ++F
Sbjct: 126 DILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKPQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  + +LA +      R+ +  EN   S  D  A +V   D D     +    G K
Sbjct: 186 SATSSAQMNSLASDILHKPQRITVTPEN---STADTIAHVVYPVDEDRKREMLSELIGKK 242

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    +VF + + + ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+
Sbjct: 243 NWKQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATE 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++
Sbjct: 303 VAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAI 345


>gi|330930035|ref|XP_003302864.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
 gi|311321492|gb|EFQ89040.1| hypothetical protein PTT_14848 [Pyrenophora teres f. teres 0-1]
          Length = 601

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 187/337 (55%), Gaps = 24/337 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLALAIA 81
           T +Q A     L  +D++  A+TGSGKT+AFG+     +  L ++ R        A+ ++
Sbjct: 211 TPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISALPQDKR----KGIKAVIVS 266

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTPGRLCD 137
           PTRELAVQ+  +L  L    G+ V    GGV      +D Q      AHIVV TPGRL D
Sbjct: 267 PTRELAVQIYDQLVALATPAGLSVVCVYGGVP-----KDPQVAACRKAHIVVATPGRLND 321

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I     ++S  + VVLDEAD MLD GF + I  I+  +PKKR+ LMF+AT  P++  LA
Sbjct: 322 LIGEGSADLSKAEYVVLDEADRMLDKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLA 381

Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA----I 248
             +    V++ I    + E R +  I     +V   D++  ++ +L+ Y   KN     +
Sbjct: 382 STFMNSPVKITIGDNQSGELRANVRIKQVVEVVDPRDKEQRLLQLLKQYQSGKNKDDRIL 441

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC  +    R    +    F+V  + G+LSQ++RS +L   ++G   + +ATDVAARG+
Sbjct: 442 VFCLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGL 501

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P +++VI+       E+ +HR GRTGRAG++G+++
Sbjct: 502 DIPAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAI 538


>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
 gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
          Length = 522

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 194/388 (50%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYH-- 242
               K++ K++    IAS   E  Q SD+      D R +L A  DRD  ++  LR +  
Sbjct: 192 ----KDFMKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 243 GAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           G +NA  ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 GNENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|325927717|ref|ZP_08188945.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541918|gb|EGD13432.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 430

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 188/351 (53%), Gaps = 11/351 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V   AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L    L      
Sbjct: 15  VFESALARAGVHALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ----- 69

Query: 70  SPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           +P  AP  L    + PTREL  QV + L  L A     + +    GG +++ +   L+ G
Sbjct: 70  APEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S +  +VLDEAD +LDLGF  +++ IL   P +R+ ++
Sbjct: 130 ADIVIATPGRLLDLVTHNALGLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT   AI +LAK   +D +R+   +   Q   I  RA+ V    R   + ++L  HG 
Sbjct: 190 VSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDAGQRTQLLRHLLLEHGW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R    +  + L++     + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 250 PQLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            RGID+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 310 GRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 360


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 177/337 (52%), Gaps = 4/337 (1%)

Query: 11  IGEALSERGYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           I +AL+ +GY   T +Q EAI  P L E  D+L  AQTG+GKT AF + +  +L      
Sbjct: 15  IQKALAAQGYSEATPIQAEAI--PHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGL 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL +APTRELA Q+            +   V  GGV    + R L+ G  I+
Sbjct: 73  LKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDIL 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    +++SH++  VLDE D+MLD+G   D++ I+   P++R+ ++FSAT
Sbjct: 133 VATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA    K  V++ +  E      I+     V  +++   +   L+ +   + +
Sbjct: 193 MPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVL 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K L +  F  VA+ G  SQ  R  AL   +  + R+ +ATD+AARG+
Sbjct: 253 VFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ +L  VI+  L   PE  +HR GRTGRAG  G ++
Sbjct: 313 DIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAI 349


>gi|84394007|ref|ZP_00992745.1| DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|84375344|gb|EAP92253.1| DNA and RNA helicase [Vibrio splendidus 12B01]
          Length = 412

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 179/325 (55%), Gaps = 6/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+A++   +  KDVL  AQTGSGKT+AFGL L + +  + +         AL I PT
Sbjct: 24  TEIQQAVIPSIIAGKDVLALAQTGSGKTLAFGLPLLNNINHDVNGLQ------ALIIVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   LE +     + +    GGV+   +++ L     + + TPGRL   I+   
Sbjct: 78  RELASQVTESLEPVATALNIKLVTLTGGVNTDDQQQQLLTQPQLAIATPGRLLALIKSSE 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++   ++VLDEAD ++D+GF  DI+ I  + P KR+ L+FSAT+   + + A+    +
Sbjct: 138 LDVTQCVSLVLDEADRLIDMGFWPDIQAITAALPSKRQSLLFSATLPSELVSQAELLLSN 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V+V+   EN   + I+    LV    +  A++ +L  H     +VF   + +    TK 
Sbjct: 198 PVKVSTHQENSVVATIEETLYLVNKGSKAQALIALLNQHTWPQVLVFIGAKDNADALTKR 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +    V AL G  SQ+ER  AL+  ++G  RV IATDV ARGI +  L +VI+ +L +
Sbjct: 258 LNKSKINVSALHGNKSQEEREQALESFKNGETRVLIATDVMARGIHIDQLPVVINFDLPT 317

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    +HR GRT RAG  G ++ ++
Sbjct: 318 HSATYVHRVGRTARAGSTGCAISLV 342


>gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 409

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 6/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   ++ +DVL  AQTGSGKT A+GL L    L + D   P     AL + PT
Sbjct: 24  TDIQRHAIPALVKHQDVLALAQTGSGKTYAYGLPL----LQQIDPSQPKIQ--ALILVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL  QV + L  +  K  +  A+  GG+S  ++   L +   +V+ T GRL D +    
Sbjct: 78  RELTTQVHQSLNTIAEKMAIRTAILCGGISQEQQEETLNSQPQLVIATTGRLLDALSKGQ 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++SH+K+ VLDEAD +LD+GF  DI+ I+   P KR+  +FSAT+   + +L +     
Sbjct: 138 VSLSHIKSWVLDEADRLLDMGFWPDIQKIIQQLPAKRQTALFSATLPEQLESLTQEVLFK 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            VR+     N     I  +  LV    +  A++ +L+ +  +  +VF   R +     K 
Sbjct: 198 PVRIEAQKTNSVVDTISEQLYLVNKGSKPQALIALLKQYPTQQTLVFIGARDNADALCKR 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +   Q  AL G   Q ER   L   +  +  V IATDV ARGI +  L LVI+ +L S
Sbjct: 258 LMKAGVQAAALHGHKEQTEREQILADFKAKKLNVVIATDVLARGIHIEQLPLVINFDLPS 317

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           N    +HR GRTGRAG  G+++ ++
Sbjct: 318 NAATYVHRVGRTGRAGNNGLALSLV 342


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 203/378 (53%), Gaps = 14/378 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++GY   T++Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 112 IQYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLP- 170

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R S    P+AL +APTRELA Q+ +E+   + +   V   CI GG     +
Sbjct: 171 AIVHIIHQPRLSNGDGPIALILAPTRELAQQI-QEVANCFGEAAGVRNTCIFGGAPKGPQ 229

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 230 AHDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 289

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAI 235
             R++LM+SAT    +  LA+++  D + +NI S   +  H+ I    V     ++D  +
Sbjct: 290 PDRQVLMWSATWPKEVRALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEF-EKDLKL 348

Query: 236 VNILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +L+  G +     I+F  T+  V   T+ +    +Q +++ G+ +QQER + LQ  + 
Sbjct: 349 YRLLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKS 408

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           GRA + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    N
Sbjct: 409 GRAPILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHN 468

Query: 352 MQRRAE--RLFREANVSV 367
           M+   +   + REA  ++
Sbjct: 469 MKHAGDLIEVLREAGQNI 486


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 187/338 (55%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL    
Sbjct: 10  PEVV-KALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQRLLDTKK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             +  SA  AL +APTRELA Q+   +      T + V    GG  +  + R L  G  I
Sbjct: 69  SATRRSAR-ALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERALDPGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +HI    ++I++L+ +V DEAD MLD+GF + I  I+       ++++FSA
Sbjct: 128 LVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAPQIMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA +  +   R+++  EN   + I +    V    +   +  ++     +  
Sbjct: 188 TSSAQMNKLASDILRKPKRISVDRENMTATTISHVVYPVDEERKTELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVAARG
Sbjct: 248 LVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARVMVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  VI+ ++    E+ +HR GRTGRAG+KG ++
Sbjct: 308 LDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAI 345


>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 432

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 185/348 (53%), Gaps = 9/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L ++G    T +QE  +    +  D++  AQTG+GKT+AF L +   +       +   
Sbjct: 16  TLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPILQRI------HTDVH 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTREL  Q+  E + L A   V +   IGG ++  + + L    H+++GTPG
Sbjct: 70  QEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQLQQLGRRPHVILGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   I
Sbjct: 130 RLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLLFSATIPDKI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK Y    V V    ++     ID R  ++   D+   ++ +++      AIVFC+ 
Sbjct: 190 RNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNK 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  +
Sbjct: 250 REGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGI 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAER 358
             V + ++  + +  +HR GRTGRAG  G++V F  P  ++  RR ER
Sbjct: 310 THVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRRIER 357


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 192/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 149 FPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLP-AVVHINNQ 207

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 208 PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLERGVE 267

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +      +     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 268 IVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 327

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D    IV +++    
Sbjct: 328 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDESEKIVKLIQLLTQ 383

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 384 ISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 443

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 444 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAND 503

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 504 LIQVLREANQTI 515


>gi|145636978|ref|ZP_01792642.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269836|gb|EDK09775.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 415

 Score =  191 bits (484), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P++I + L ++G+V  T++Q       L   +++  A TGSGKT+++ +  A   ++  
Sbjct: 108 FPEIIIKELKKQGFVEPTAIQAQGWPIALSGNNLVGIASTGSGKTLSY-IVPALIHISHQ 166

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S    P+ L ++PTRELA Q+    +      GV      GG     +  DL  G  
Sbjct: 167 RKLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDLSRGVE 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D     R++LM+S
Sbjct: 227 LVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLMWS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRY---H 242
           AT    +  LA+ +  + +++NI S     + +I     +    D++  ++++L+     
Sbjct: 287 ATWPKEVKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLKKIMDE 346

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +  H +  V + G+ SQ ER N L+  RD R  + +ATD
Sbjct: 347 DENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNVLKDFRDSRYPILVATD 406

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ + G +     Q+  ++A  L   
Sbjct: 407 VAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSHKTGTAYTFFTQSNAKQAADLVSV 466

Query: 360 FREANVSV 367
             EAN ++
Sbjct: 467 LTEANQTI 474


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 190/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 ILAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 LRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN LHR GR+GR GRKG+++  + +  +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 14/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP------ 71
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L +   D  +P      
Sbjct: 218 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSKSLEKRGPDGDAPRGLGRQ 277

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 278 SKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 337

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    +++SH++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 338 TPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHLRQTLMFS 397

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R +   +  D+D+A+++IL      
Sbjct: 398 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSALLDILCSDSTG 457

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 458 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 517

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S 
Sbjct: 518 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557


>gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 451

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 180/336 (53%), Gaps = 1/336 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L   G+   T +Q   +   L   D++  AQTG+GKT+AFGL L   LL+ + + 
Sbjct: 29  ILAKTLKTAGFSEPTPIQNQAIPLALDGHDIMGLAQTGTGKTLAFGLPLLEHLLSLHGKP 88

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTREL  Q+   L      T V +A  +GG S+ R+   L  G  I+V
Sbjct: 89  EPKTA-RALILAPTRELVNQIADSLRVFTQNTPVKIATVVGGQSIGRQISTLSRGTDILV 147

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  + +++S +K +VLDEAD+MLDLGF   +  I  +    R+ ++FSAT+
Sbjct: 148 ATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDLGFIHALRKIAPALGTPRQTMLFSATM 207

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  LA  Y  +  +V ++   +    +      +    +   +  +L        +V
Sbjct: 208 PKQMEELASAYLSNPKKVQVSPPGKAADKVTQVVHFMPKPAKPAKLREVLNEDPDALVLV 267

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K L    +   ++ G  SQ +R  A++  RDG  ++ +ATDVAARGID
Sbjct: 268 FGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTIKILVATDVAARGID 327

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P +  VI+ EL   P+N +HR GRT RAGR+G ++
Sbjct: 328 IPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAI 363


>gi|145638288|ref|ZP_01793898.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272617|gb|EDK12524.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 415

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
 gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
          Length = 617

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 4/336 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSP 71
           +AL+       T VQ+ ++       D++VS+QTGSGKT  F L +   ++  E      
Sbjct: 14  QALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVMHRMMTGEQSPMEM 73

Query: 72  ASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            + P  L + PTRELA QV ++ +  +    GV VA  +GG+   ++   L+ GA IVVG
Sbjct: 74  LAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGGMPYGKQMASLR-GARIVVG 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   LN+S +  +++DEAD MLDLGF +D+E I      + + LMFSAT +
Sbjct: 133 TPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQLCGNRIQTLMFSATFA 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             I  LA+N   +  R+ +A++N  ++DI  + +          ++N  L +     A+V
Sbjct: 193 KRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLNHWLEHPDMVQAVV 252

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+       + LA+   +  AL G + Q  R+  L  +R G  +V +ATDVAARG+D
Sbjct: 253 FTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIKVLVATDVAARGLD 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P +  VI+  +    E+ +HR GRTGRAGR G++V
Sbjct: 313 VPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAV 348


>gi|147777235|emb|CAN76636.1| hypothetical protein VITISV_010658 [Vitis vinifera]
          Length = 539

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 9/325 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L  +D +  A TGSGKT+AFG+ A+   L     + S    PL L ++PTRELA Q+   
Sbjct: 154 LDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDV 213

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           L       GV      GG S   +   L++G  IV+GTPGRL D I      ++ +  VV
Sbjct: 214 LCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVV 273

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASE 212
           LDEAD MLD+GF  ++  IL  +   R+M+MFSAT    +  LA+ +   + V+V I SE
Sbjct: 274 LDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSE 333

Query: 213 NRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAK--NAIVFCSTRASVSRFTKVLAEH 267
           +   ++ D   ++  L D  RD  ++ +L +YH ++    +VF   +   +R   +L   
Sbjct: 334 DLA-ANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRR 392

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            + VV++ G+ +QQ R+ AL + + G   + IATDVAARG+D+PD+E+VI+       E+
Sbjct: 393 GWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTED 452

Query: 328 LLHRSGRTGRAGRKGMS-VFVIPQN 351
            +HR GRTGRAG+KG++  F + +N
Sbjct: 453 YVHRIGRTGRAGKKGVAHTFFMQEN 477


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 191/360 (53%), Gaps = 7/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I   + E+G+   T +Q       L  +D++  A TGSGKT+A+ L  A  ++ +
Sbjct: 241 NFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVHIVHQ 300

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+AL +APTRELA Q+ + +   Y+  G +   C+ GG     + RDL+ G
Sbjct: 301 -QRIQRGDGPIALILAPTRELAQQI-QSVAQAYSAHGCIRNTCLFGGSPKGPQARDLERG 358

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM
Sbjct: 359 VEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 418

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +SAT    I  LA+++  D V+VNI S N   +++I     +    +++  + N+L+   
Sbjct: 419 WSATWPKEIQALAEDFLTDYVKVNIGSLNLSANNNIKQIIEVCEEHEKEVKLTNLLKEIA 478

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++     IVF  T+  V    + +  +  + +A+ G+ SQQER   L   R+G   + IA
Sbjct: 479 SEKDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQQERDAVLTEFRNGATTILIA 538

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D++ V++ +  +  E+ +HR GRTGR  + G +         R+A  L 
Sbjct: 539 TDVAARGLDVEDVKFVVNFDYPNTSEDYIHRIGRTGRCQQSGTAYTYFTSGDARQARSLL 598


>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 174/328 (53%), Gaps = 4/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +QE  +   L+ +D++  A+TGSGKT AF + +   LL   D         A  +APT
Sbjct: 53  SKIQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQKLL---DAAPHRKLTWACVLAPT 109

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           REL VQ+G++ E L A   +  A  +GG+ +  +   L    HI+V +PGRL DH+   K
Sbjct: 110 RELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPHIIVASPGRLVDHLENTK 169

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  +K +V+DEAD +L + F D +  I+ S P+ R+  +FSAT++  ++ L +    
Sbjct: 170 GFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMTNKVSQLQRASLT 229

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
             V+  +A +      +    + V    +   +  +L +      ++F  T  +  R   
Sbjct: 230 RPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMAT 289

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L       V L G+++Q  R  AL   R G   V +ATDVAARG+D+P +++VI+ ++ 
Sbjct: 290 TLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVINFDVP 349

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            NPE  +HR GRT RAGR G SV ++ Q
Sbjct: 350 KNPEEYIHRVGRTARAGRTGRSVTLVTQ 377


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 186/338 (55%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L L   LL E+ 
Sbjct: 10  PEVV-KALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLL-ESG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + +      AL  APTRELA Q+   ++     T + VA   GG  +  + R L+NG  I
Sbjct: 68  KSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERMLENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+       +++MFSA
Sbjct: 128 LVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  L+K+  +   R+ +  EN     + +    V    +   +  ++     +  
Sbjct: 188 TTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSELIGRKNWQQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     +     G+ +Q  R  AL+  ++G+ RV +ATDVAARG
Sbjct: 248 LVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRVMVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 308 LDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 182/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++   +   +          
Sbjct: 52  EYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ------ 105

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q  + ++ +     +    CIGG SV  + R L++G H+V GTPGR+C
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 165

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML  GF+D I  +    P   ++ + SAT+   I  +
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  + V++ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 226 TSKFMTEPVKILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 283

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV I TDV ARGID+  +
Sbjct: 284 KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQV 343

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 182/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++   +   +          
Sbjct: 35  EYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ------ 88

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q  + ++ +     +    CIGG SV  + R L++G H+V GTPGR+C
Sbjct: 89  ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 148

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML  GF+D I  +    P   ++ + SAT+   I  +
Sbjct: 149 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 208

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  + V++ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 209 TSKFMTEPVKILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 266

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV I TDV ARGID+  +
Sbjct: 267 KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQV 326

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 327 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 358


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 197/379 (51%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G AL+E      Y   T VQ+  +   L  +D++  AQTGSGKT AF   + + ++   
Sbjct: 137 LGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAGIMRNT 196

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P     + PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  VH + R+++
Sbjct: 197 PPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQLREME 256

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 257 RGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMDMPPAG 316

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  LA ++  + + + +         I  R   V  +D+ + ++++
Sbjct: 317 ERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVQDADKRSMLMDL 376

Query: 239 LRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +    A          +VF  T+         L    F    + G+ SQQER +AL+  R
Sbjct: 377 IHAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQEREHALRSFR 436

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G++       
Sbjct: 437 TGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVATAFFNEK 496

Query: 349 PQNMQRRAERLFREANVSV 367
            Q++ R    L  E+N  V
Sbjct: 497 DQSLARPLSELMTESNQEV 515


>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 635

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 547 ERNINIT 553


>gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 632

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 9/339 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+ F L L  T L    R        PL L I 
Sbjct: 207 TQIQMQGLPSILIGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLIIC 266

Query: 82  PTRELAVQ----VGRELEWLYA-KTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRL 135
           P+RELA Q    +    E+LY  K  ++ ++C IGGVS + + ++++ G H++V TPGRL
Sbjct: 267 PSRELASQTHNIIKYFCEYLYKDKFPMLKSLCVIGGVSTYEQGKEIKKGVHMLVATPGRL 326

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K + +   + +  DEAD ++DLGF ++I  +LD+   +R+ L+FSAT+   I  
Sbjct: 327 NDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNVLDNFSSQRQTLLFSATMPRKIQE 386

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            AK+   + + +N+      + D+      V    + + ++ +L+  G    ++FC  + 
Sbjct: 387 FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQKTGPP-VLIFCENKK 445

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L       +A+ G L Q ER  A+ + R+G   V + TDVA++G+D P +E 
Sbjct: 446 DVDDVHEYLLLKGINAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDFPSIEH 505

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           VI+ ++  + EN +HR GRTGR G+ G++   I +N + 
Sbjct: 506 VINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEE 544


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 257

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 258 KYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 437

Query: 243 GAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  + I VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 438 GKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 545

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 546 ERNINIT 552


>gi|254491606|ref|ZP_05104785.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463084|gb|EEF79354.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 415

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 188/338 (55%), Gaps = 11/338 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AEN-DRF 69
           +++ G+   T +Q   L   L  +DV   AQTG+GKT+AF LA    LL    A+N D+ 
Sbjct: 1   MAQAGFEFCTPIQAQSLPLLLSGRDVAGQAQTGTGKTIAFLLATFQRLLEIPAADNWDK- 59

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELA+Q+ ++ E L  + G+ +A+  GG    R+R ++  G  +++
Sbjct: 60  ---KQPRALILAPTRELAIQIAKDAELLNVEAGLRIAIAHGGKDYQRQRDNITEGVDVLI 116

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSA 187
           GTPGRL D+ +    ++  + A+VLDEAD M DLGF  D+ + L   PK  KR  ++FSA
Sbjct: 117 GTPGRLLDYQKQGVFSLKFIDAMVLDEADRMFDLGFIKDVRYFLRRIPKPEKRLGMLFSA 176

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  ++ LA  +  +  +V +A E      I+      A  ++   ++ ++     +  
Sbjct: 177 TLSYKVSELAYEHMNNPEKVQVAPEKMMGDRIEEWVYYPANDEKVPLLLALIERLQPERG 236

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+ +       L  +  +   LSG++ Q++R   L+  +DG     +ATDVAARG
Sbjct: 237 IIFVNTKQAADVVWGYLEGNEHKAALLSGDVPQKKREQLLKHFQDGEFPFLVATDVAARG 296

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +P +  V + +L  + E+ +HR+GRT RAG  G+++
Sbjct: 297 LHIPAVTHVFNYDLPQDVEDYVHRTGRTARAGASGVAI 334


>gi|50292537|ref|XP_448701.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661117|sp|Q6FM43|PRP28_CANGA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49528013|emb|CAG61664.1| unnamed protein product [Candida glabrata]
          Length = 582

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/359 (35%), Positives = 205/359 (57%), Gaps = 23/359 (6%)

Query: 7   IPQVIGEALSE-RGYVNLTSVQ-----EAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           IP  +  AL+E  G+   T++Q      AI +     +D+L  A TGSGKT+AF + + +
Sbjct: 177 IPTDLVRALTEGMGFDEPTAIQRITIPNAISSNKSVPRDILGIASTGSGKTLAFSIPILA 236

Query: 61  TLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYA----KTGVVVAVCIGGVS 113
            L A   R         PLAL + PTRELA Q+ +E+  L +    K  +     +GG S
Sbjct: 237 RLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRLLSAWENKKNLNAVSIVGGHS 296

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +      L+NG  I++ TPGRL D +    + ++ ++++VLDEAD M+DLGF D ++ IL
Sbjct: 297 MSDISHTLRNGCDILIATPGRLLDVLDNHLVVLNKIQSLVLDEADRMIDLGFEDQMKSIL 356

Query: 174 D----SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                     R+ ++F+AT+S ++ ++AK Y K+ + V++ S  R  SD      +V  +
Sbjct: 357 SHLMADELAARQTMLFTATLSSSVESIAKGYLKNPLHVSVGS--RWDSDKPLITQVVRHT 414

Query: 230 DRDNAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             D+  ++ L+    KN   AI+F + + +    T  L++  F +V L G  SQ +R +A
Sbjct: 415 GDDDKKLSFLKDDLIKNGLPAIIFINYKETADWLTLRLSDR-FNIVTLHGSKSQSQRESA 473

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +Q ++ G A V IAT+VAARG+D+PD+ LV++ ++S   ++ +HR GRTGRAG+ G++V
Sbjct: 474 IQKLKSGTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAV 532


>gi|157376037|ref|YP_001474637.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318411|gb|ABV37509.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 432

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/348 (34%), Positives = 184/348 (52%), Gaps = 7/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++   L+E  YV  T VQ   +   L  KDVL  A TGSGKT AF L L   LL++ 
Sbjct: 21  IPELLAR-LTELEYVTPTLVQTGTIAAVLEGKDVLAGAITGSGKTAAFALPLIQRLLSKQ 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVHRERRDLQN 123
                 +    L + PTRELA QV    +  YAK     V V    GGVS + +   L+ 
Sbjct: 80  STSVKGNLIGTLVLVPTRELAQQVAESFKS-YAKLIKPRVKVEAVFGGVSANTQMLALRG 138

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL D I    + +  + ++VLDEAD ML LGF +++  IL   PK ++ L
Sbjct: 139 GADVLVATPGRLLDLISSNAVKLGQVTSLVLDEADRMLSLGFEEELTEILAKLPKHKQTL 198

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  L        V V + SE +  S +  +   V  + +   + ++++ + 
Sbjct: 199 LFSATFPEEVKILTDKLLSSPVEVQLQSEEK--STLTQQVYTVNRNSKTALLAHLIKEND 256

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF S + + +R  + L +          + +Q  R+  L+  + G  RV IATD+
Sbjct: 257 WRQVLVFASAKNTCNRLEQKLEKLGIAAQVFHSDKAQGARTRVLEGFKSGEIRVLIATDI 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +
Sbjct: 317 AARGIDIEKLPVVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHD 364


>gi|145634056|ref|ZP_01789767.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145268500|gb|EDK08493.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 415

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 191/348 (54%), Gaps = 4/348 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F ++P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   QLFSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTREL+VQ+  + E+L   +G+  ++  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYPHPRALILAPTRELSVQISNDAEFLSKASGLNTSLAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDV ARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 309 LVATDVVARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|319775175|ref|YP_004137663.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|329122905|ref|ZP_08251476.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
 gi|317449766|emb|CBY85973.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|327471836|gb|EGF17276.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
          Length = 415

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL + PTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILVPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 189/346 (54%), Gaps = 10/346 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 234 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQKLMADGVAASQFSE 293

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGV+   + RD+  G +I+ GT
Sbjct: 294 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVASGHQIRDICRGCNILCGT 353

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +  L+ +VLDEAD MLD+GF  D+  ++ S    + + R  LMFS
Sbjct: 354 PGRLLDVIGRGK-VGLEKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPTKENRNTLMFS 412

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    +   +V++L+  G++
Sbjct: 413 ATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIEVTKFSKREQLVDLLKATGSE 472

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L++      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 473 RTMVFVETKRQADFIATFLSQTKIPTTSIHGDREQREREQALADFRSGKCPVLVATSVAA 532

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V    Q+
Sbjct: 533 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDQD 578


>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 466

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 184/344 (53%), Gaps = 3/344 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L   L   +  
Sbjct: 10  QSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERL--SSGP 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + L+ G  I+
Sbjct: 68  KAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQRLRKGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR+ LMFSAT
Sbjct: 128 VATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK    D V +++A++N     +      V    +   + +++R +  +  +
Sbjct: 188 FSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKPRKTALLSHLIRTNDWQQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +ATD+ ARG+
Sbjct: 248 VFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++ FV  ++
Sbjct: 308 DIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTED 351


>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 536

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/372 (34%), Positives = 186/372 (50%), Gaps = 22/372 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
            + Q I +AL +RG     ++QE  L   L   D++  A+TG GKT  FG+ L   L+  
Sbjct: 42  GVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLDRLVTQ 101

Query: 64  -----AENDRFSPASAPLALAIAPTRELAVQV---------GRELEWLYAKTGVVVAVCI 109
                 E+   +    P AL I PTREL VQV         G  ++    +  + +    
Sbjct: 102 ARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRVQTTKGERDLKITSIY 161

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG     +   LQ G  +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF  DI
Sbjct: 162 GGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADEMLDLGFLPDI 221

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           E IL   P  R+ ++FSAT+   I TLA+ + K    V   +E+   S +  R       
Sbjct: 222 ERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVR--AEHHDDSAVHERTTQYVYR 279

Query: 230 ----DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
               D+   +  +L+  G    ++F  T+ +  +    L E  F+V A+ G+L Q  R  
Sbjct: 280 AHALDKTELVAKVLQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQVAREK 339

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL   RDG   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G +V
Sbjct: 340 ALGKFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGRAGKTGTAV 399

Query: 346 FVIPQNMQRRAE 357
            ++  +   R E
Sbjct: 400 TLVDWDELHRWE 411


>gi|209886522|ref|YP_002290379.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 512

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 184/350 (52%), Gaps = 3/350 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  + + I  ALSE  YV  T +Q   +   +  +DV+  AQTG+GKT +F L +
Sbjct: 1   MTSFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R  P +  + L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 61  LHRLLENRVRPQPKTCRV-LVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++G  L +  ++ +VLDEAD MLD+GF  DI  I+   P 
Sbjct: 120 RALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPH 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA++  ++  RV +   +     I  R + +  S +   +  +
Sbjct: 180 RRQTLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRIIQLDSSAKPATLSEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  + L +      A+ G  SQ  R   L   R+G  R  
Sbjct: 240 LKSEPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G ++ ++
Sbjct: 300 VATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLV 349


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 184/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI++ +L     +  I+F 
Sbjct: 194 VNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 254 ATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGEALRAMKENG 257

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 258 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCH 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNAT 437

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 438 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 545

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 546 ERNINIT 552


>gi|330899540|gb|EGH30959.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 483

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   R+ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDRQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 188/340 (55%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75
           G+ + +++Q   +    + +D +  AQ+G+GKT  F +++     T L E          
Sbjct: 15  GFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTALRETQ-------- 66

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+   +  +     V    CIGG +V  + R L +G H+V GTPGR+
Sbjct: 67  -ALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRV 125

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L   H+K +VLDEAD++L  GFR+ I  +    P   ++++ SAT+   + +
Sbjct: 126 ADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLS 185

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR
Sbjct: 186 MTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTR 245

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV ARGID+  + 
Sbjct: 246 RKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVS 305

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           LVI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 306 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 345


>gi|225463253|ref|XP_002274688.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 9/325 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L  +D +  A TGSGKT+AFG+ A+   L     + S    PL L ++PTRELA Q+   
Sbjct: 164 LDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDV 223

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           L       GV      GG S   +   L++G  IV+GTPGRL D I      ++ +  VV
Sbjct: 224 LCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVV 283

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASE 212
           LDEAD MLD+GF  ++  IL  +   R+M+MFSAT    +  LA+ +   + V+V I SE
Sbjct: 284 LDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSE 343

Query: 213 NRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAK--NAIVFCSTRASVSRFTKVLAEH 267
           +   ++ D   ++  L D  RD  ++ +L +YH ++    +VF   +   +R   +L   
Sbjct: 344 DLA-ANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRR 402

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            + VV++ G+ +QQ R+ AL + + G   + IATDVAARG+D+PD+E+VI+       E+
Sbjct: 403 GWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTED 462

Query: 328 LLHRSGRTGRAGRKGMS-VFVIPQN 351
            +HR GRTGRAG+KG++  F + +N
Sbjct: 463 YVHRIGRTGRAGKKGVAHTFFMQEN 487


>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663176|emb|CAZ34081.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 794

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 203/394 (51%), Gaps = 15/394 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI E L  R    L  VQ    +     +D +V A+TG+GKT+AF L L ++L+  
Sbjct: 186 NIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVNSLI-- 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S  S+P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+ G 
Sbjct: 244 KGQGSRPSSPVVLVLAPTRELVTQIATDFESISVH-GIKVTSVYGGVPYRPQCDALRQGT 302

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-----SSPKKR 180
           HIVVG PGR+ D +    L +S ++ VVLDE D MLD+GF  D+E IL       + +K 
Sbjct: 303 HIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSENSEKP 362

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + L+FSAT+   ++ +++ Y   DA+ +++    E +  +++ + A+L     R   + +
Sbjct: 363 QTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAATLSD 422

Query: 238 ILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++ +        IVFC  +      +   A        L G + Q +R   LQ  RDG+
Sbjct: 423 VIKVYCKGRESRCIVFCERKKDADELSASDAMS-GDCHVLHGSVPQDKRELVLQRFRDGK 481

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R  + T+VAARG+D+P+++LVI      + E+ +HRSGRTGRA R G S+       + 
Sbjct: 482 YRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYKERS 541

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
              R+   A ++     AP++  I     + IL+
Sbjct: 542 MLSRIENMAGITFRRISAPTINDITTAWGEEILK 575



 Score =  108 bits (269), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 3/166 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI E L  R    L  VQ    +     +D +V A+TG+GKT+AF L L ++L+  
Sbjct: 15  NIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVNSLI-- 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S  S+P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+ G 
Sbjct: 73  KGQGSRPSSPVVLVLAPTRELVTQIATDFESISVH-GIKVTSVYGGVPYRPQCDALRQGT 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           HIVVG PGR+ D +    L +S ++ VVLDE D MLD+GF  D+E 
Sbjct: 132 HIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVEI 177


>gi|229845944|ref|ZP_04466056.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
 gi|229810948|gb|EEP46665.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
          Length = 415

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL   D  
Sbjct: 19  IVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPN 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G  I++
Sbjct: 79  LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSA 187
           GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ R  ++FSA
Sbjct: 139 GTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTMLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA     D   + I  E +    I       +  D+   ++ ++     +  
Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERC 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 186/363 (51%), Gaps = 7/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I   + + G+   +++Q       L  +D++  A+TGSGKT+ F L  A   +   
Sbjct: 120 FPEYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALP-AMVHINAQ 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+AL +APTRELA Q+  E       + +      GGV    + RDLQ GA 
Sbjct: 179 PLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQRGAE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+  +  +V+DEAD MLD+GF   I  IL      R+ LMFS
Sbjct: 239 ICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRPDRQTLMFS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++  +  +VNI S E   + ++     +    ++   ++  L    A 
Sbjct: 299 ATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFEKRGKLIGHLELISAD 358

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           N   I+F ST+      TK L +  +  +A+ G+  QQER   L   + GR+ + +AT V
Sbjct: 359 NGKVIIFTSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRSPIMVATAV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRAERLF 360
           A+RG+D+ D+  VI+ +  +N E+ +H+ GRTGRAGR G +  +  P+N +  R    + 
Sbjct: 419 ASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKSARELVGIL 478

Query: 361 REA 363
           REA
Sbjct: 479 REA 481


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 182/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++   +   +          
Sbjct: 52  EYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ------ 105

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q  + ++ +     +    CIGG SV  + R L++G H+V GTPGR+C
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVC 165

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML  GF+D I  +    P   ++ + SAT+   I  +
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  + V++ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 226 TSKFMTEPVKILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 283

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ +  + F V ++ G++ Q+ER   +   R G +RV I TDV ARGID+  +
Sbjct: 284 KRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRVLITTDVWARGIDVQQV 343

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 189/353 (53%), Gaps = 13/353 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           ++I ENI  +    L++ G    T +QE  +   L  KDV+  A+TG+GKT+AF L +  
Sbjct: 6   LEINENIVNI----LNKNGIKTPTPIQEESIPKILLGKDVIGEAKTGTGKTLAFLLPIFQ 61

Query: 61  TLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +       SP  +    L ++PTRELA+Q+  E + L     + +    GG  +  + +
Sbjct: 62  NI-------SPNTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  H+V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+ ++ KK
Sbjct: 115 KLKHNIHLVIATPGRLLDHIERKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKAASKK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L FSAT+   +  LA  Y  D + ++I S       I  + V      + +++   L
Sbjct: 175 HQTLCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCAAL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      AI+FC T+         L +       +  ++ Q +R   ++  R+   +  I
Sbjct: 235 QEDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           ATDVAARGID+  +  + + +    PE+ +HR GRTGRAG  G + +FV P++
Sbjct: 295 ATDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKD 347


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 183/342 (53%), Gaps = 2/342 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L   L   +
Sbjct: 8   LSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIERL--SS 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + L+ G  
Sbjct: 66  GPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR+ LMFS
Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++A++N     +      V  + +   + +++R +  + 
Sbjct: 186 ATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKTALLSHLIRTNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +ATD+ AR
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVATDIVAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFV 347


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 186/332 (56%), Gaps = 13/332 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q  +    L+ +D++  A+TGSGKT+AFG+     LL      S + A   L 
Sbjct: 110 YAKPTPIQAVVWPYLLKGRDMVGVAETGSGKTMAFGVPAVEHLLK-----SDSKALQVLI 164

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I+PTRELA Q+   L  L AK G+      GGVS   +RR ++  +  V+ TPGRL D I
Sbjct: 165 ISPTRELASQIYDNLNELTAKVGLECVCVYGGVSKDDQRRAVKR-SQCVIATPGRLIDLI 223

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               +++  +  +VLDEAD ML+ GF +DI+ ++  +   R+ LMF+AT    +  LA N
Sbjct: 224 EDGSISLDKINYLVLDEADRMLEKGFEEDIKKVMKLTNGNRQTLMFTATWPKEVRELAMN 283

Query: 200 YQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYH--GAKN---AIVFCS 252
           +    V+V I   +   ++  I     +V   +++  ++ +LR +  G+K     ++F  
Sbjct: 284 FMDKPVKVTIGQRDELSANKRIQQIVEVVDPREKEQKLLQLLRKYQSGSKKDDKLLIFAL 343

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +   +R  K L    F V AL G+L+Q +R+ ALQ  + G+  + +ATDVAARG+D+P+
Sbjct: 344 YKKEAARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKAGKHNILLATDVAARGLDIPN 403

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +++VI+       E+ +HR GRTGRAG+ G+S
Sbjct: 404 VKVVINLTFPLTVEDYVHRIGRTGRAGQTGIS 435


>gi|311032733|ref|ZP_07710823.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 449

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 191/340 (56%), Gaps = 8/340 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQE  +   L  KDVLV + TG+GKT+A+ L +   +            P AL +AP+
Sbjct: 26  TPVQEQAIPVILDGKDVLVESPTGTGKTLAYLLPIIERIDLSKQH------PQALIVAPS 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           +ELA+Q+  +++     + +  A  IGG +V R+   L+   HI+VGTPGRL + I+ K 
Sbjct: 80  KELAMQIFEQIQKWTEGSEISGASFIGGANVKRQLEKLKKKPHILVGTPGRLQELIQMKK 139

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAITTLAKNYQK 202
           + +  +K +V+DEAD++     +  IE I+ SS  ++R++L+FSAT+       A +  K
Sbjct: 140 IKMHEVKTIVMDEADQLFVPEHKKTIENIIKSSMQQERQLLLFSATLKEETEKQAVDLLK 199

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + + + +  E+   + +++   +V   D+ N + N+LR  G K A+ F     +++  T+
Sbjct: 200 EPLVIKVTKEDLPPARVEHLYAVVDQRDKANVLANLLREPGIK-ALAFVRDIGNLAVLTE 258

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L      V  L  E S+QER NA++  R     V +ATDVAARG+D+ +L  VIH +L 
Sbjct: 259 KLLYKQLNVGFLHSESSKQERENAMKNFRKDEYPVLLATDVAARGLDIKELSHVIHYDLP 318

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
              E+ +HRSGRTGR G +G  + ++ +  +RR ++  RE
Sbjct: 319 EEVESYVHRSGRTGRQGAEGTVISIVSEREERRLKQFARE 358


>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 447

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 185/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+     +V TPGR
Sbjct: 78  PRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI++ +L     +  I+F 
Sbjct: 198 VNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T+ L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 258 ATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 318 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 354


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L      + A+      
Sbjct: 219 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHRRGPEAEATRGLGRQ 278

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 279 QKAYPTALILGPTRELVSQIYEEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 338

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    ++++H++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 339 TPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFS 398

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R V   +  D+D+A+++IL      
Sbjct: 399 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECESDKDKDSALLDILCTDSTG 458

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 459 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 518

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFR 361
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L +
Sbjct: 519 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSMVDLLK 578

Query: 362 EANVSV 367
           +AN  V
Sbjct: 579 DANQEV 584


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 194/367 (52%), Gaps = 20/367 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AEND------RF 69
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L     E D      R 
Sbjct: 218 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSKSLEKRGPEGDAPRGLGRQ 277

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S A  P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V
Sbjct: 278 SKA-YPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLV 336

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMF 185
            TPGRL D +    +++SH++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMF
Sbjct: 337 ATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHFRQTLMF 396

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244
           SAT  P I  LA+ + KD + +++        +I  R +   +  D+D+A+++IL     
Sbjct: 397 SATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSALLDILCSDST 456

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VA
Sbjct: 457 GLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVA 516

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LF 360
           ARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L 
Sbjct: 517 ARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLSTAFFSRSKNFKIARSMVDLL 576

Query: 361 REANVSV 367
           ++AN  V
Sbjct: 577 KDANQEV 583


>gi|16081434|ref|NP_393777.1| DEAD box protein [Thermoplasma acidophilum DSM 1728]
 gi|10639440|emb|CAC11442.1| probable DEAD box protein [Thermoplasma acidophilum]
          Length = 388

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 199/359 (55%), Gaps = 13/359 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  NI + +   L   G+V++T+VQE  + P L  +D+++ ++TGSGKT A+ + +
Sbjct: 21  MSKFEECNIKEDLKSDLKRMGFVDMTAVQERTIEPALAGRDLIIRSKTGSGKTAAYLVPI 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +       S    P AL + PTRELA+QV    E L   + +   V  GG S+ R+ 
Sbjct: 81  INNI-------SLGRKPSALIVLPTRELALQVHGVAEKLGHSSRIRSTVIYGGASMSRQI 133

Query: 119 RDLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G  I+VGTPGR+ D H RG  LN+S +K  VLDEAD MLD+GF DDI+ ++    
Sbjct: 134 ELLDRGTDIIVGTPGRILDLHERG-FLNLSAVKYFVLDEADVMLDMGFIDDIKRMMSLLR 192

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++  + SAT+   I  +A ++ +D   + + S+     +I +   +   + + + +  
Sbjct: 193 EDKQTFILSATMPEEIIDMANDFMRDPETIIVGSDEVTVKEIYHYYAISKRNRKLHVLQT 252

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +G +  I+F  T+         L    +  V ++G++SQ +R  A+ + R+ RA  
Sbjct: 253 YLKTYGPQKTIIFSRTKVGTKMVCDFLLNMGYNAVMINGDMSQSQRERAMYLFRN-RADY 311

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            +AT+VAARGID+ D+  +I+ +L  +P+  +HR GRT R G +G + F I +  QR A
Sbjct: 312 LVATNVAARGIDIRDVTDIINFDLPDDPKVYVHRVGRTARLGSEGRA-FSIVEEGQRDA 369


>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 539

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 192/349 (55%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +++ E G+   T++Q  +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 138 NICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPILQELREK 197

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   + +    GGV +  +  +L    
Sbjct: 198 RQSF------FALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAKKP 251

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+V TPGR+ DH+   KG N+ +LK +V DEAD++L L F   I  +L   P+KR   +
Sbjct: 252 NIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRITFL 311

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ + V ++S+    S +    + + L  +   + ++  +  +
Sbjct: 312 FSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKYTYLCSLCFHFSS 371

Query: 245 KNAIVF---CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++ I+F   C+T   ++ F + L     + + L G+L+Q +R ++L   +  R  + I+T
Sbjct: 372 RSIIIFANTCATAQKINFFCRNLG---LKSICLHGKLTQNQRLSSLNSFKSKRYNILIST 428

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            V ARG+DL D+ +VI+ +L S  E  +HR GRT RAGR G S+  + Q
Sbjct: 429 QVGARGLDLKDIRIVINFDLCSCKE-YIHRVGRTARAGRTGKSITFVTQ 476


>gi|149248004|ref|XP_001528389.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032662|sp|A5DU73|PRP28_LODEL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|146448343|gb|EDK42731.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 597

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/369 (34%), Positives = 191/369 (51%), Gaps = 33/369 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  +L   G+   T VQ A +   L  +DV+  A+TGSGKT+AF L L   L   + 
Sbjct: 194 PKILA-SLKSFGFRQPTPVQRASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDG 252

Query: 68  RF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + PLAL +APTRELA+Q+ +E E    + G  V   IGG         + N
Sbjct: 253 NYLNYEKVRNEPLALVLAPTRELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDN 312

Query: 124 -----GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                G HIVVGTPGRL D +  K LN S    +V+DEAD M+D+GF  D+  +++  PK
Sbjct: 313 MIVGRGVHIVVGTPGRLLDSVERKILNFSKCYYLVMDEADRMIDMGFEKDLNKLINLLPK 372

Query: 179 ----------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                           KR  +M++ATISP I  + K+Y  D   + I        +ID  
Sbjct: 373 NEKLSTTIDGKLFHLTKRLTMMYTATISPPIEKITKSYLIDPAYIYIGGAGEALDNIDQH 432

Query: 223 AVLV---ALSDRDNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              +   A S R + ++ +++ H  +N     I+F + +      +  L ++    V + 
Sbjct: 433 FDYLSTYAESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNNLLNVVIH 492

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  SQ+ R  AL+  R  +A + +ATDVAARGID+P++ LVI+ ++S   +  +HR GRT
Sbjct: 493 GSKSQEAREEALEDFRTHQAPILVATDVAARGIDVPNVSLVINYQMSKKFDEYIHRIGRT 552

Query: 336 GRAGRKGMS 344
           GRAG  G S
Sbjct: 553 GRAGNLGES 561


>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 488

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 203/387 (52%), Gaps = 24/387 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+ +   +AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 21  NLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIERLGGG 80

Query: 63  -LAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
             A  DR  PA+A     P AL +APTRELAVQ+  EL+       V  A+ IGGV +  
Sbjct: 81  APAPKDR--PAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGA 138

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   
Sbjct: 139 QSAALRD-HEVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARV 197

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++
Sbjct: 198 PKVRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLM 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ R
Sbjct: 258 ALLEEDDL-STLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYR 316

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ-- 353
           V +ATD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G  S F  P+ +   
Sbjct: 317 VLVATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLL 376

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRE 380
           R  ERL R         P P  E  RE
Sbjct: 377 RDIERLTR--------APIPRAEVPRE 395


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++     T L E          
Sbjct: 46  GFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQSMDTTLRETQ-------- 97

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 98  -VLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 156

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  
Sbjct: 157 FDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 216

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D +R+ +  +      I    V V   + + + + ++        A++FC+TR
Sbjct: 217 MTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTR 276

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV ARGID+  + 
Sbjct: 277 RKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGIDVQQVS 336

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 208/395 (52%), Gaps = 22/395 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + +   GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 79  IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP- 137

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +           P+AL +APTRELA Q+ +++   +  T  V   C+ G +  RE+
Sbjct: 138 AIVHINNQPPIRRGDGPIALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQ 196

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 197 ARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 256

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ LM+SAT    +  LA++Y  D +++NI S     +    + V +         +N
Sbjct: 257 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLN 316

Query: 238 IL-------RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +L       +  GAK  I+F  T+      ++ +  + +  V + G+ +QQER   L   
Sbjct: 317 VLLQEIGQSQEPGAK-TIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQF 375

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           ++GRA + +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S  F  P
Sbjct: 376 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 435

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRER 381
            N  R+A+ L    +EAN  +    +P ++++ +R
Sbjct: 436 SN-SRQAKDLVSVLQEANQII----SPQLQSMADR 465


>gi|309751440|gb|ADO81424.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2866]
          Length = 418

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 359


>gi|78357523|ref|YP_388972.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219928|gb|ABB39277.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 530

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/348 (35%), Positives = 187/348 (53%), Gaps = 4/348 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P +I EA+S RG+VN T +QE  L P L  +D+L  A TG+GKT AF L L   LL
Sbjct: 61  FSLHPALI-EAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLLHRLL 119

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + +  S      AL +APTREL  Q+  E++ L     +  A   GGV +H +   L+ 
Sbjct: 120 LQGE--SARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQLRT 177

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+  PGRL DH+R    ++SH+  +VLDEAD M D+GF  D+  IL  +  +++ +
Sbjct: 178 GVDIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQTM 237

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   +  LA+   +  VR+ + +     + + +    V    +   +  +LR   
Sbjct: 238 LFSATMPAPLRELAEECLRQPVRIELDTCAIAPT-VRHSLCPVPKHLKTPLLKYVLRAFA 296

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF  TR    R  + L +   +   L G LSQ  R  AL+  R G  RV +ATD+
Sbjct: 297 RDSVLVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRVMVATDI 356

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARGID+  +  VI+ +   + E  +HR+GRTGRA   G+++  + Q 
Sbjct: 357 AARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTFVTQE 404


>gi|121608139|ref|YP_995946.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552779|gb|ABM56928.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 467

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 125/332 (37%), Positives = 178/332 (53%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   GY  +T +Q A L   L  +D++  A+TGSGKT AF  ALA     +  R     A
Sbjct: 25  LQRLGYRQMTPIQAACLPAALAGQDLIAQARTGSGKTAAF--ALALLAKLDPRRL----A 78

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA QVG E+  L  A+    +    GGV +  +   L +GAHIVVGTPG
Sbjct: 79  LQALVLCPTRELAEQVGSEIRRLARAEENTRLVTLCGGVPLRGQMLSLAHGAHIVVGTPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH++ + L+++ L  +VLDEAD MLD+GF D I  +    P  R+ L+FSAT    +
Sbjct: 139 RVLDHLQRQQLSLAALNTLVLDEADRMLDMGFFDAIATLARQCPGARQTLLFSATYPEGV 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +  V++  A        I+ R   +  S R  A+  +L +   ++AI FC+T
Sbjct: 199 AKIGAQFMRAPVQIT-AQARHAEGKIEQRWYELGQSQRLPAVAQLLGHFRPESAIAFCNT 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R        VL    F  +AL GEL Q+ER   L         V +ATDVAARG+D+  L
Sbjct: 258 RQQCRDLLAVLQAQGFGALALYGELEQRERDQVLVQFASRSCSVLVATDVAARGLDIAHL 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+  +S +P+  +HR GRTGR    G+++
Sbjct: 318 AAVINVAVSPDPQVHVHRIGRTGRGDATGLAL 349


>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 547

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 193/358 (53%), Gaps = 23/358 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL+E   V   ++QE  L   L  +DV+  A+TG+GKT+ FG+ +   +    +
Sbjct: 72  PEIV-SALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQRITPPGE 130

Query: 68  RFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           +  PA+             P AL + PTREL VQV R++       GV V    GG +  
Sbjct: 131 Q--PAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNLGVRVVAIYGGRAYE 188

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  ++VGTPGRL D    + L +  +KA+VLDEADEMLDLGF  D+E IL  
Sbjct: 189 PQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDEADEMLDLGFLPDVERILRM 248

Query: 176 SPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHS---DIDYRAVLVALSD 230
            P++R  ++FSAT+   I  L++ +  +   +R   A +   H     + YRA  +   D
Sbjct: 249 LPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGSIHERTKQLVYRAHAM---D 305

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  +L+      +++F  T+ +  R    LAE  F   A+ G+L Q  R  AL+  
Sbjct: 306 KVELVTRVLQAKDRGLSMIFTRTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQALRAF 365

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  +  V +ATDVAARGID+  +  V++ +   + +  +HR GRTGRAGR+G++V ++
Sbjct: 366 RAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVTLV 423


>gi|296083374|emb|CBI23263.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 9/325 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           L  +D +  A TGSGKT+AFG+ A+   L     + S    PL L ++PTRELA Q+   
Sbjct: 243 LDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDV 302

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           L       GV      GG S   +   L++G  IV+GTPGRL D I      ++ +  VV
Sbjct: 303 LCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVV 362

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASE 212
           LDEAD MLD+GF  ++  IL  +   R+M+MFSAT    +  LA+ +   + V+V I SE
Sbjct: 363 LDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSE 422

Query: 213 NRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAK--NAIVFCSTRASVSRFTKVLAEH 267
           +   ++ D   ++  L D  RD  ++ +L +YH ++    +VF   +   +R   +L   
Sbjct: 423 DLA-ANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRR 481

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            + VV++ G+ +QQ R+ AL + + G   + IATDVAARG+D+PD+E+VI+       E+
Sbjct: 482 GWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTED 541

Query: 328 LLHRSGRTGRAGRKGMS-VFVIPQN 351
            +HR GRTGRAG+KG++  F + +N
Sbjct: 542 YVHRIGRTGRAGKKGVAHTFFMQEN 566


>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 477

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 127/375 (33%), Positives = 191/375 (50%), Gaps = 8/375 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L + E    
Sbjct: 12  ILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNSREAQNK 71

Query: 70  SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                P+ AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+
Sbjct: 72  GKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQMMKLRGGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT
Sbjct: 132 VATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     +   V +   N     +      V    +   +  ++  +  +  +
Sbjct: 192 FSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNWQQVL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AARG+
Sbjct: 252 VFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIAARGL 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANV 365
           D+  L  V++ EL + PE+ +HR GRTGRA   G +   V V    + R  ERL +    
Sbjct: 312 DIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLKREIP 371

Query: 366 SVV---WEPAPSVEA 377
            +    +EP PS++A
Sbjct: 372 RIAIEGYEPDPSIKA 386


>gi|256391892|ref|YP_003113456.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256358118|gb|ACU71615.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 502

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q + L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 70  DLPGALLQTLAREGLTEPFPIQASTLPNSLAGRDVLGRGRTGSGKTIAFGLAL---LART 126

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 127 AGRRAEPREPLALVLVPTRELAQQVTDALTPYAHAVRLRLATVVGGISIGRQAHALRSGA 186

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 187 EIVVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFLPQVTELLDQVAPGGQTMLF 246

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  ++       + +++  + +  SD++ A+ +I    G  
Sbjct: 247 SATLDRNVDRLVRRFLTDPVTHSVDPSAASVTTMEHHLLHIEGSDKNAAVAHIASREG-- 304

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR    R  + L  +  +  AL G  SQ +R+  L+  R G+    IAT+VAA
Sbjct: 305 GVIMFTDTRHGADRLVRDLLANGVRAAALHGGKSQPQRTRTLEQFRGGQVTALIATNVAA 364

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+   A +
Sbjct: 365 RGIHIEGLDLVVNVDPPADHKDYLHRGGRTARAGESGTVVTLVLPNQRRDMTRMMAAAGI 424

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P+   +R  DA+
Sbjct: 425 T------PNSARVRPGDAE 437


>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
 gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
          Length = 439

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 190/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+++ G+   + +Q   L   L+ KDV+  AQTG+GKT AF  A+   LL
Sbjct: 25  FDLSPELM-HAIADVGFKYCSPIQAQSLPHALQGKDVVGKAQTGTGKTAAFLAAIIDDLL 83

Query: 64  AE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                  R+  A    AL IAPTREL +Q+  + + L   T + +   +GG+   +++R 
Sbjct: 84  KNPITEKRY--AGEARALVIAPTRELVIQIAEDAKALCKYTDLKIHTLVGGMDYTKQQRR 141

Query: 121 LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L      I+V TPGRL D    K + +  L+ +V+DEAD MLD+GF   +  I+  +P +
Sbjct: 142 LHETLVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPHR 201

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L FSAT +  +  L + +    V + I  E+  ++ +D    LV+  ++   + N
Sbjct: 202 EDRQTLFFSATFTDDVHNLVQQWTYKPVTIEIEPESVANARVDQHVYLVSTEEKYTLLYN 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++   A++ IVF + R       + L  H  +   LSGE++Q +R + L   ++G  +V
Sbjct: 262 LIQQEHAESMIVFANRRDECRDLYEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNGDIKV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  V++  L   PE+ +HR GRTGRAG+ G S+
Sbjct: 322 LVATDVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKSGTSI 369


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 185/341 (54%), Gaps = 19/341 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  SD+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 539


>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 624

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 199/386 (51%), Gaps = 53/386 (13%)

Query: 13  EALSERGYVNLTSVQEAIL------------NPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +A+++ G+   T+VQ A +            +P  +  D+LVS+QTGSGKT AF L +  
Sbjct: 60  QAVADMGFTQPTAVQLATIPKAMQGLDADGADPKAKFTDLLVSSQTGSGKTAAFLLPVLH 119

Query: 61  TLL------------------------------------AENDRFSPASAPLALAIAPTR 84
           TLL                                      N R   A+ P AL + PTR
Sbjct: 120 TLLMQQEEAERQERAEFERLSAEAIAKGEAPPKKPKRKDPTNARNFKAATPGALILCPTR 179

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + ++ +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R   
Sbjct: 180 ELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKLQN-ANLVVATPGRLLDLQRSMQ 238

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA    + 
Sbjct: 239 IKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIMQLATRVMRT 298

Query: 204 AVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
             RV I S + +H+ I  +++L A  ++ +   + + LR      +IVF  T+       
Sbjct: 299 PQRVEIDSPHEKHTSI-TQSLLWADNMTHKRKLLDHHLRDTTMNQSIVFACTQVECDGLA 357

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +  F  VAL G L Q  R+  L   RDGR +V +ATDVAARG+D+P +  VI+  L
Sbjct: 358 NDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQVLVATDVAARGLDVPTITHVINYGL 417

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFV 347
               E+ +HR GRTGRAGR+G ++ +
Sbjct: 418 PMKAEDYVHRIGRTGRAGREGQAITI 443


>gi|297201135|ref|ZP_06918532.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197713661|gb|EDY57695.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 504

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGL L + L  +
Sbjct: 85  DLPERLQAALLAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLPLLARL--D 142

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        +  A  +GG+S+ R+   L+ GA
Sbjct: 143 GQRAEPRH-PLALVLVPTRELAQQVTDALTPYARALRLRAATVVGGMSIGRQASALRAGA 201

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 202 EVLVATPGRLKDLIERGDCSLSQVTMTVLDEADQMTDMGFMPQVTALLDQVRPDGQRML- 260

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L +NY  D V  ++       + +D+  + V   D+      I    G 
Sbjct: 261 FSATLDRNIDRLVRNYLHDPVVHSVDPSAGTVTTMDHHLLHVRDDDKHATATEIAARDG- 319

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG+  V +AT+VA
Sbjct: 320 -RVIMFLDTKHAAERLAKHLLSVGVRASALHGGKSQPQRTRTLGQFKDGQVTVLVATNVA 378

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + D++LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R  +RL  +A 
Sbjct: 379 ARGIHVDDVDLVVNFDPPADHKDYLHRGGRTARAGESGTVVTLVLPHQRRSVDRLMSDAG 438

Query: 365 VS 366
           V+
Sbjct: 439 VT 440


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 196/370 (52%), Gaps = 10/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I E L  +G+   T++Q   +   L  +D++  AQTGSGKT+A+ +  +  
Sbjct: 113 FEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAY-VVPSLV 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +           P+AL +APTRELA Q+ +      ++         GG     + RDL
Sbjct: 172 HIQHQATIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDL 231

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 232 ERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 291

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
           +LM+SAT    +  LA+ +  D +++NI S N   +    + V V    ++D  ++ +L 
Sbjct: 292 VLMWSATWPKEVRNLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 351

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              A+     I+F  T+  V   T+++  + ++ VA+ G+ SQQER   L   R+GR  +
Sbjct: 352 EISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGI 411

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 412 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAN 471

Query: 358 RL---FREAN 364
            L    REAN
Sbjct: 472 DLINVLREAN 481


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 198/371 (53%), Gaps = 9/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   NLEDSVLDALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVLNQLSKG 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQ 122
           N    P  A   + +APTRELA+Q+ +++E + Y      VAV  G  G+   +E++ L 
Sbjct: 67  N---YPEDAINCIIMAPTRELAMQIDQQMEGFSYFMPASSVAVYGGNDGIRFEQEKKGLT 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   PK+R+ 
Sbjct: 124 LGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFAEDIMQIVKYLPKERQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+   I  LAK    + V V +A  ++    I   A +   + +   I ++ +  
Sbjct: 184 IMFSATMPTKIQQLAKTILTNPVEVKLAV-SKPAEKIIQAAYICYEAQKLGIIESLFKEQ 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F S++  V   TK L      V  +  +L Q +R   +   R+GR  + +ATD
Sbjct: 243 QPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRINMLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--F 360
           + ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + +++  F
Sbjct: 303 IVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQNKFKQIENF 362

Query: 361 REANVSVVWEP 371
            E  +  +  P
Sbjct: 363 LEKEIYKIPVP 373


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score =  190 bits (483), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 182/330 (55%), Gaps = 3/330 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L                
Sbjct: 53  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVSGSTLVQVRETQ 112

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ 
Sbjct: 113 ALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 172

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +
Sbjct: 173 DMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEM 232

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
              +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+ 
Sbjct: 233 TNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKR 292

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L
Sbjct: 293 KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 352

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +I+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 353 IINYDLPNNRELYIHRIGRSGRYGRKGVAI 382


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 179/336 (53%), Gaps = 7/336 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+++  Y   + +QE  +   L  KD++  AQTG+GKT AF L + + L      + 
Sbjct: 12  ILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILNKL-----EYK 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELAVQ+    +  + +   + A C+ GG     +R+ L++G  I++
Sbjct: 67  KKHQIRALVLTPTRELAVQIFENFKK-FGRYLKLRACCVYGGAPSGPQRKALRSGCDILI 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + +S ++  VLDEAD MLD+GF  D+  I    P+ R+ +MFSAT+
Sbjct: 126 ATPGRLNDFMVQGEIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQTVMFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     D V + +A        I    V    +D+   + ++L       AIV
Sbjct: 186 PKEIKELANELLHDPVDIRVAPPASPAETITQYLVYCEKADKKRLLKDMLVSPEVTKAIV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R TK L E   +V+ + G+ +Q +R NALQ  R  +  V +ATDVAARGID
Sbjct: 246 FTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLVATDVAARGID 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L    E+ +HR GR GRAG++G+S+
Sbjct: 306 ISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISI 341


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 184/342 (53%), Gaps = 15/342 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY   T VQ+  +   +  +D++  AQTGSGKT  F   + +          P S     
Sbjct: 212 GYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQNFVNGPSPPPQSQAGGY 271

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  +
Sbjct: 272 GRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDL 331

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK-RRML 183
           +V TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I+   D  P   R+ L
Sbjct: 332 LVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAARQTL 391

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++ K+ + +++        +I  +   V  +D+ + +++IL  HG
Sbjct: 392 MFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTHG 451

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   ++F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT V
Sbjct: 452 AGLTLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATAV 511

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P+++ V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 512 AARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 553


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 186/338 (55%), Gaps = 2/338 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L L   LL E+ 
Sbjct: 28  PEVV-KALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLL-ESG 85

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + +      AL  APTRELA Q+   ++     T + VA   GG  +  + R L+NG  I
Sbjct: 86  KSASRKTARALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERMLENGVDI 145

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+       +++MFSA
Sbjct: 146 LVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMMFSA 205

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  L+K+  +   R+ +  EN     + +    V    +   +  ++     +  
Sbjct: 206 TTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSELIGRKNWQQV 265

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + + + +   K L     +     G+ +Q  R  AL+  ++G+ RV +ATDVAARG
Sbjct: 266 LVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRVMVATDVAARG 325

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 326 LDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 363


>gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 191/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL
Sbjct: 93  FKLAPELM-HAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLL 151

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+  +   L   TG+ V   +GG+   ++ + 
Sbjct: 152 ETPPPKERY--MGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++    I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 329

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV
Sbjct: 330 LITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRV 389

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 390 LVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSI 437


>gi|254454125|ref|ZP_05067562.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198268531|gb|EDY92801.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 501

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 12/344 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AQTG+GKT  F L + + L     R   A  P +L +APTRELA QV    +     T +
Sbjct: 5   AQTGTGKTAGFTLPMITMLKRGRAR---ARMPRSLVLAPTRELAAQVAENFDTYAKYTKL 61

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
             A+ IGGVS   +   +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+
Sbjct: 62  TKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDM 121

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSD 218
           GF  DIE I   +P  R+ L FSAT++P I  +   +  +  ++ +A     SE      
Sbjct: 122 GFIPDIERIFGLTPFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGV 181

Query: 219 IDYRAVLVA--LSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           I ++    A   S++   + +I+   GA  +N I+FC+ +  V    K + +       +
Sbjct: 182 IMFKGSKKASEASEKQKLLRDIIASEGADCRNGIIFCNRKIDVDAVAKSMTKAGLDASPI 241

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+L Q  R   L   RDG  R  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GR
Sbjct: 242 HGDLEQSHRMRTLAKFRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGR 301

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           TGRAG+ G ++ +     Q+  + + R   +++     P + ++
Sbjct: 302 TGRAGKTGTTIMICTPRDQKNFDDIERLVEMAIPRMELPGMASV 345


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 7/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ I + + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 556 NFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLP-AVVHINN 614

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+AL +APTRELA Q+ +++   +  T +V   CI GG     + RDL+ G
Sbjct: 615 QQRPQRGEGPVALILAPTRELAQQI-QKVAHEFGSTTMVRNTCIFGGSPKGPQARDLERG 673

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM
Sbjct: 674 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 733

Query: 185 FSATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +SAT    +  LA+ +  D ++VNI     + N     I          ++   ++  + 
Sbjct: 734 WSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIG 793

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+  V   TK +    +  +++ G+ SQ ER   L   R G++ + +A
Sbjct: 794 SDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVA 853

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N QR+A+ L
Sbjct: 854 TDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKDL 912


>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1180]
          Length = 454

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 15  AVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    + + + +A  N     +      V    +   + +++     +  +VF  T
Sbjct: 195 KALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G   V +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDICVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA   G +   V V    + R  E+L ++    +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIP 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|223590190|sp|A5DAC8|DBP3_PICGU RecName: Full=ATP-dependent RNA helicase DBP3
 gi|190344457|gb|EDK36135.2| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/324 (34%), Positives = 185/324 (57%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A     L   DV+  A+TGSGKT AFG+   + ++ +N +         L I+PT
Sbjct: 153 TPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAINNIITDNKK-----GLRVLCISPT 207

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+   L  L    G+      GGV   ++ + ++  A +VV TPGRL D +    
Sbjct: 208 RELALQIYDNLTMLTKNCGLTCVAIYGGVPKDQQIKAVKT-ASVVVATPGRLVDLLNDGA 266

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++S +  +VLDEAD ML+ GF +DI+ I+  + K+R+ LMF+AT    +  LA  +   
Sbjct: 267 VDLSTIDYLVLDEADRMLEKGFEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFMNK 326

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAKNAI-VFCSTRASVSRF 260
           AV+V+I + +   ++      +  +  RD    ++ +LR +G+   I VF   +   +R 
Sbjct: 327 AVKVSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEATRV 386

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
             +L    F V A+ G+LSQQ+R++AL   + G + + +ATDVAARG+D+P++++VI+  
Sbjct: 387 EAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLT 446

Query: 321 LSSNPENLLHRSGRTGRAGRKGMS 344
                E+ +HR GRTGRAG+ G++
Sbjct: 447 FPLTVEDYVHRIGRTGRAGQTGIA 470


>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 208/393 (52%), Gaps = 27/393 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           + L  RG  NL  +Q+          D++   +TGSGKT+A+ L +   +    L +N  
Sbjct: 38  KVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKN 97

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P  L + PTRELA+QV  E    L+ +    +    GG  +  +   ++ G  I
Sbjct: 98  ------PYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGGTDLRNQIDQVRQGCEI 151

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFS 186
           VVGTPGR+ D +  K L +  ++ VVLDEAD+ML+ GF+++IE I+   + +K +ML+FS
Sbjct: 152 VVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNDRKIQMLLFS 211

Query: 187 ATISPAITTLAKNY-QKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           ATI   +  L++ Y + +   +N+    E +  + + + A+  A +    AI +++  +G
Sbjct: 212 ATIPDWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSVYG 271

Query: 244 AKNA--IVFCSTRASVSRF---TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            ++A  I+FC T+   +     +K+ AE       L G++ QQ+R+   +  ++G+ +  
Sbjct: 272 GRHARTIIFCETKRECNEIILHSKLPAE----TQPLHGDIPQQQRTVTFEGFKNGKFKCL 327

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D P ++L+I      + E+ +HRSGRTGRAG+ G+ +    +      ER
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIER 387

Query: 359 LFREANVSVVWEPAPSVEAI---RERDAQRILQ 388
           + R A +  +   AP  + I     RD Q  LQ
Sbjct: 388 VERVAKIKFIKISAPQHQDIIKASSRDLQTSLQ 420


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A           EN R
Sbjct: 241 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGR 300

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL+L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 301 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 360

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ +
Sbjct: 361 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 420

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 421 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRDFLLDLLNATG 480

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L E  +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 481 KDSLTLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 540

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +++ VI+ +L S+ E  + R GRTGR G  G+            A   F E
Sbjct: 541 VAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNLGL------------ATSFFNE 588

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 589 KNINIT 594


>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
 gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
          Length = 510

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 190/341 (55%), Gaps = 10/341 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q   +   L+ KD++  A+TGSGKT AF L +   LL    R+       A+ + PT
Sbjct: 80  SKIQREAIPLALQGKDIIGLAETGSGKTGAFALPILQALLDNPQRY------FAVVLTPT 133

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + E L A  GV   V +GG+ +  +   L    HI++ TPGRL DH+   K
Sbjct: 134 RELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAIQLARKPHIIIATPGRLVDHLENTK 193

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  ++ +V+DEAD +L++ F +++  IL   P++RR  +FSAT++  +  L +   +
Sbjct: 194 GFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPRERRTFLFSATMTKKVKKLERASLR 253

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D V+V ++S+ +    +    + +    ++  +V++L      + ++FCST  +  R   
Sbjct: 254 DPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHVLNELAGNSFMIFCSTCNNTVRTAL 313

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           +L       V L G+++Q +R  AL   +    ++ I+TDVA+RG+D+P +++V++ ++ 
Sbjct: 314 MLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQILISTDVASRGLDIPHVDVVLNLDIP 373

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
            + ++ +HR GRT RAGR G ++  + Q    + +R E L 
Sbjct: 374 MHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLL 414


>gi|148828072|ref|YP_001292825.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittGG]
 gi|189040031|sp|A5UI36|RHLB_HAEIG RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148719314|gb|ABR00442.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 415

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 191/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL
Sbjct: 93  FKLAPELM-HAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLL 151

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+  +   L   TG+ V   +GG+   ++ + 
Sbjct: 152 ETPPPKERY--MGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 209

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++    I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 210 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 269

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N
Sbjct: 270 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 329

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV
Sbjct: 330 LITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRV 389

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 390 LVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSI 437


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 188/339 (55%), Gaps = 13/339 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLL------AENDRFSPA 72
           +   T VQ+  +    + +D++  AQTGSGKT  F    L+ + L      A ND +S  
Sbjct: 165 FTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQ 224

Query: 73  --SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R++ +G  ++V 
Sbjct: 225 RKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVA 284

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK-KRRMLMFS 186
           TPGRL D +    +++S++K +VLDEAD MLD+GF   I  I+   D  P  +R+ LMFS
Sbjct: 285 TPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPPTGERQTLMFS 344

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+++  D + +++        +I  R + V   D+++A++++L       
Sbjct: 345 ATFPHDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNSALLDLLAASNDNL 404

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    + T  L    F   A+ G+ SQ ER  AL   R GRA + +AT VAAR
Sbjct: 405 TLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRANILVATAVAAR 464

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++ 
Sbjct: 465 GLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVAT 503


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 728

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 206/366 (56%), Gaps = 9/366 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N+   + +++ ++GY + TS+Q+  +   L  +D++  A+TGSGKT +F +  A   +
Sbjct: 260 FDNL---LIQSIQKQGYESPTSIQKQAVPIALSGRDLIAIAKTGSGKTASF-IWPAIPHI 315

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P+AL +APTRELA Q+  E +       +  +V  GGV+   + R+L+ 
Sbjct: 316 MDQPYLEKGDGPIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGGVTKLLQCRELKA 375

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D I+ K   ++ +  +VLDEAD M D+GF   ++ I+      R+ L
Sbjct: 376 GCEILVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRPDRQTL 435

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYH 242
           +FSAT  P I  LA+N   D +R++I +    + DI    ++++ + ++ N ++  L   
Sbjct: 436 LFSATFPPNIEELARNILIDPIRISIGNTGSANQDITQNVIVLSSNGEKWNWLIQRLPSL 495

Query: 243 GAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            ++ N I+F ST+ +V   +  L +  F    L G+  QQER+  +   +DG   + +AT
Sbjct: 496 VSQGNVIIFVSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGSVPILVAT 555

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVAARG+D+  +  V++ + S + ++  HR GRTGRAG +G++   + P+++   AE  +
Sbjct: 556 DVAARGLDINLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKDIHFSAELVK 615

Query: 359 LFREAN 364
              EAN
Sbjct: 616 HLEEAN 621


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 186/339 (54%), Gaps = 8/339 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   +S  GY   T +QE  +   ++ +D++  AQTG+GKT AF L +   L+ +     
Sbjct: 12  VAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPILHRLMQK----- 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +   AL IAPTRELA Q    +  L A T +      GGV++ R+ + L+  + IVV 
Sbjct: 67  PGNGVRALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLKQ-SDIVVA 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189
            PGRL DHI  K +++S ++ +VLDEAD+M D+GF  DI  IL   P+K R+ LMFSAT+
Sbjct: 126 CPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGRQTLMFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     + V V I       + + +    VA   +   ++ +L   G ++ +V
Sbjct: 186 PAQIKRLAGEVLHNHVLVQIGHVAPADT-VKHAFYPVAQHLKTALLLQLLGSTGTESVLV 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +    L +  F   +L G LSQ  R +A+   + G+ +V +ATD+AARGID
Sbjct: 245 FTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVATDIAARGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ++  VI+ ++ S PE  +HR GRTGRA R+G +   I
Sbjct: 305 VANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFI 343


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPHKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment']
          Length = 407

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 181/342 (52%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I   +   G+   T +Q   L   L  KD+   AQTGSGKT AF + L   LL  
Sbjct: 8   SLPASIARGIEAAGFTQCTPIQAETLPLALAGKDIAGQAQTGSGKTAAFLIPLFVRLLTS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + + AP AL +APTRELAVQ+  + E L   TG+      GGV   ++R  LQ   
Sbjct: 68  RHP-TLSGAPRALILAPTRELAVQILWDAELLGGFTGLTRLAAYGGVDYQKQRDALQQNV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GTPGRL D+ +     +S ++ +V+DEAD M D+GF  D+ F+L   P   KR+  
Sbjct: 127 DILIGTPGRLIDYFKQGVYELSQVEVLVVDEADRMFDMGFIKDLRFLLRRLPPYHKRQSF 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S     L+  +  + ++V I+ E      +++    V   ++   +  +L+   
Sbjct: 187 LFSATLSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLFHVEKQEKFRLLRWLLQREA 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +TR    R T  L    F+   +SG + Q++R   +   + G   + +ATDV
Sbjct: 247 WQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAGTLPILVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +  +  VI+ +L  +PE+ +HR GRT RAG  G ++
Sbjct: 307 ASRGLHVEAVSHVINYDLPQDPEDYVHRIGRTARAGAAGKAI 348


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 61  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 115 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 295 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 354

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 355 NYDLPNNRELYIHRIGRSGRYGRKGVAI 382


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 61  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 115 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 295 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 354

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 355 NYDLPNNRELYIHRIGRSGRYGRKGVAI 382


>gi|309973610|gb|ADO96811.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2846]
          Length = 418

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 184/338 (54%), Gaps = 2/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL   D  
Sbjct: 22  IVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPN 81

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G  I++
Sbjct: 82  LEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 141

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSA 187
           GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ R  ++FSA
Sbjct: 142 GTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTMLFSA 201

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA     D   + I  E +    I       +  D+   ++ ++     +  
Sbjct: 202 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERC 261

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 262 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 321

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 322 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 359


>gi|238502010|ref|XP_002382239.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220692476|gb|EED48823.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 498

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/332 (36%), Positives = 180/332 (54%), Gaps = 11/332 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TS+Q A        +DV+  A+TGSGKT+AFGL     +            PLA+ I+PT
Sbjct: 104 TSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPT 163

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +L       GV +A   GGV    +R  L+  A +VV TPGRL D      
Sbjct: 164 RELAMQIYDQLLKFSGSVGVRMACVFGGVRKEEQREALKT-AGVVVATPGRLKDLQNDGS 222

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLAKNYQK 202
           +++  +K +VLDEAD MLD GF  DI+ I+   P  KR+ +MF+AT  P++  LA  +  
Sbjct: 223 VDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVSKRQTIMFTATWPPSVRDLASTFMS 282

Query: 203 DAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNAIVFCST 253
             V V I    +++ R ++ I     +V   ++++ +V +L          +  + FC  
Sbjct: 283 SPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESRLVQLLNRSQRGVPEPEKVLAFCLY 342

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  ++L    F+V  + G+LSQQER  +L   + G A V +ATDVAARG+D+P +
Sbjct: 343 KKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSV 402

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + VI+       E+ +HR GRTGRAG +G +V
Sbjct: 403 KQVINVTFPLTVEDYVHRIGRTGRAGAEGHAV 434


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 203/388 (52%), Gaps = 20/388 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + +S  GY   T +Q       +   +++  AQTGSGKT+A+ L  A   +  
Sbjct: 113 NFPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILP-AIVHINN 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNG 124
                    P+AL +APTRELA Q+ +++   +     V   C+ G +  RE+ RDL+ G
Sbjct: 172 QPPIRRGDGPIALVLAPTRELAQQI-QQVACDFGNASYVRNTCVFGGAPKREQARDLERG 230

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM
Sbjct: 231 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLM 290

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----- 239
           +SAT    +  LA++Y  D +++NI S     +    + V V         +N+L     
Sbjct: 291 WSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIG 350

Query: 240 --RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +  GAK  I+F  T+  V   T+ +    +  V + G+ +QQER + L   + GRA +
Sbjct: 351 QSQEPGAK-TIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQGRASI 409

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S  F  P N  R+A
Sbjct: 410 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN-SRQA 468

Query: 357 ERL---FREANVSVVWEPAPSVEAIRER 381
           + L    +EAN ++    +P ++ + +R
Sbjct: 469 KDLVNVLQEANQTI----SPQLQTMADR 492


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   +++Q+  + P +  +DV+  AQ+G+GKT    LAL   L       + + 
Sbjct: 45  GLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQML------DTTSR 98

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELAVQ  +    L     V V  CIGG S+  + R L  G HIV GTPG
Sbjct: 99  EVQGLVLSPTRELAVQTEKTALALGNFMNVQVHACIGGRSIGEDIRKLDYGCHIVSGTPG 158

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P + ++++ SAT+   +
Sbjct: 159 RVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEV 218

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             +   +  D +R+ +  +      I    V V   + + + + ++        A++FC+
Sbjct: 219 LEMTGKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 278

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ + ++ F V A+ G++ Q+ER   +   R G  RV I TD+ ARGID+  
Sbjct: 279 TKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLITTDMWARGIDVQQ 338

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LVI+ +L  N EN +HR GR+GR GRKG+++
Sbjct: 339 VSLVINYDLPGNRENYIHRIGRSGRYGRKGVAI 371


>gi|323494189|ref|ZP_08099304.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
 gi|323311583|gb|EGA64732.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
          Length = 434

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65
           PQ I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +E
Sbjct: 18  PQ-ITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTAAFNHLLTTSE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 77  HEGRKP-NQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILDQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 177/343 (51%), Gaps = 4/343 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           +AL+  GY   T +Q   +   +  KD+L  AQTG+GKT AF L +   L AEN R +P 
Sbjct: 28  QALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPILHRL-AEN-RVAPL 85

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                 L ++PTRELA Q+    +      G  VAV  GGV    + R +Q G  ++V T
Sbjct: 86  PRTTRCLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQERAIQAGLDVLVAT 145

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH++ K L++S  +  VLDEAD+MLDLGF   I  I+   P KR+ L FSAT+  
Sbjct: 146 PGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPAKRQNLFFSATMPT 205

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    K+ V+V +  ++     I+   + V    +   +  +         +VF 
Sbjct: 206 EIGKLAGELLKEPVKVQVTPQSTTVERINQSVIHVEQGRKRALLTEMFADDNFTRCLVFT 265

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +    L     Q  A+ G  SQ +R   L   + G+ RV +ATD+AARGID+ 
Sbjct: 266 KTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVLVATDIAARGIDVD 325

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +  V++ EL   PE  +HR GRT RAG  G ++ FV    M+
Sbjct: 326 GVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMK 368


>gi|19113180|ref|NP_596388.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1723271|sp|Q10202|DBP3_SCHPO RecName: Full=ATP-dependent RNA helicase dbp3
 gi|3451298|emb|CAA20430.1| ATP-dependent RNA helicase Dbp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 126/354 (35%), Positives = 185/354 (52%), Gaps = 20/354 (5%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           + Y   T +Q A     L  +DV+  A+TGSGKTVAFG+     L   +D     S P  
Sbjct: 183 KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDN---KSVPRV 239

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA+Q    L  L   T +   V  GG     + R  +N A +++GTPGRL D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGRLLD 298

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-----KRRMLMFSATISPA 192
            I    ++ S +  +VLDEAD MLD GF  DI  I+  +P       R+ + FSAT   +
Sbjct: 299 LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYH---GAKN 246
           +  LA  + KD V++ I S+    S  +   ++  L D   ++  + N+LR H   G K+
Sbjct: 359 VRALAATFLKDPVKITIGSDELAASQ-NITQIVEILDDPRSKERMLDNLLRKHLSSGGKD 417

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +   +R    LA   + VV + G++SQ  R  AL   + G+  V +ATDVA
Sbjct: 418 DKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVA 476

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           ARG+D+P ++LVI+       E+ +HR GRTGRA  KG ++ F  PQ+     E
Sbjct: 477 ARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGE 530


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 202/379 (53%), Gaps = 24/379 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +     R
Sbjct: 178 EIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQIYESGPR 237

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         PL L +APTRELA Q+  E      ++ +  AV  GG ++  + R
Sbjct: 238 PPPPQANSSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMR 297

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSS 176
           +L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD+GF   I  I+  D+ 
Sbjct: 298 ELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRFLVLDEADRMLDMGFEPQIRRIVQEDNM 356

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   D+ + 
Sbjct: 357 PPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSY 416

Query: 235 IVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++++L+     +       +VF  T+       + LA   + V ++ G+ +Q+ER +AL+
Sbjct: 417 LLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREDALR 476

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  G++    
Sbjct: 477 RFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLATSFF 536

Query: 349 ---PQNMQRRAERLFREAN 364
                N+ R    L  EAN
Sbjct: 537 NHKNHNLVRDLVSLLIEAN 555


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 193/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 198 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALRAMKENG 256

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 257 KYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 316

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 317 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 376

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 377 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 436

Query: 243 GAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  + I VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 437 GKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 496

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 497 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 544

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 545 ERNINIT 551


>gi|89891113|ref|ZP_01202621.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
 gi|89516757|gb|EAS19416.1| ATP-dependent RNA  helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
          Length = 449

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 188/351 (53%), Gaps = 10/351 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   +   L++ G+  +T +QE      L  +D++  AQTG+GKT+ + L L
Sbjct: 1   MKNFEELNLGTPLRNGLNDLGFTTMTPIQEQAFPVILSGRDMIGIAQTGTGKTLGYMLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++    P  L + PTREL VQV  ++E   A   + V    GG +++ ++
Sbjct: 61  LHEL-----KYAETLDPRILVLVPTRELVVQVVEQIEAYAAYINIRVLGVYGGTNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + + +G  I+V TPGRL D I  + + + + K +V+DE D MLDLGFR  +  I D  PK
Sbjct: 116 KAVTDGVDIIVATPGRLYDLIVAQTVRLKYCKKIVIDEVDVMLDLGFRFQLTNIFDHLPK 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           KR+ +MFSAT++  I    K+Y  +  +V++A    +  +I+     V     + N +++
Sbjct: 176 KRQNIMFSATMTDQIEDFIKSYFFNPEKVSVAVSGTRLENIEQTCYPVENFYTKANLLMD 235

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRA 295
           +L      K  +VF   + S  R    + E    ++  +    +Q  R  ++++   G  
Sbjct: 236 LLTDVEEFKKVLVFVGNKKSADRLQDYMLERYGDEIAVIHSNKTQNYRLRSIELFDTGER 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           R+ IATDV ARG+DL  +  VI+ ++ S PEN +HR GR+GRA  KG ++ 
Sbjct: 296 RILIATDVMARGLDLEKISHVINIDVPSFPENYMHRIGRSGRAEEKGKTIL 346


>gi|92081444|dbj|BAE93269.1| RNA helicase [Tubifex tubifex]
          Length = 402

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 178/332 (53%), Gaps = 8/332 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + +L    E  +FS    P A+ + PTREL  Q+  E 
Sbjct: 4   RDMMACAQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEA 63

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                 T V   V  GGV+   + R++  GAH+VVGT GRL D IR   L+++ +K  +L
Sbjct: 64  RKFAHNTMVRPVVVYGGVTTGYQAREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKYFIL 123

Query: 155 DEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           DEAD MLD+GF  ++  + +     +  +R+ LMFSAT    +  LAK    D + V + 
Sbjct: 124 DEADRMLDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFVTVG 183

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                ++DI+   + V   ++   +V+IL   G +  +VF   +         L++  F 
Sbjct: 184 RVGGANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFVEQKRQADFIASYLSQSEFP 243

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             ++ G+  Q+ER  AL+  ++G A + +AT VAARG+D+P +  VI+ ++  + +  +H
Sbjct: 244 TTSIHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINFDMPQSIDEYVH 303

Query: 331 RSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           R GRTGR G  G +  F  P + Q  A  L +
Sbjct: 304 RIGRTGRCGNLGRATSFFNPSSDQPLARPLVK 335


>gi|54290855|dbj|BAD61516.1| myc-regulated DEAD/H box 18 RNA helicase-like [Oryza sativa
           Japonica Group]
          Length = 535

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 189/340 (55%), Gaps = 16/340 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ +DVL  A+TG+GKTVAF L  A  LL+   R SP+
Sbjct: 86  KAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAF-LLPAIELLSTLPR-SPS 143

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
                L I PTRELA QV  E  + L     + V V IGG  + +E+R +Q N   I+V 
Sbjct: 144 IN--LLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVA 201

Query: 131 TPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGRL DH+    G    I  +K +VLDEAD +LD+GFR DIE I+   PK+R+ L+FSA
Sbjct: 202 TPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDIEKIIAFIPKERQTLLFSA 261

Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   +  ++    K   + +N   E  +  HS +    ++  L    + + N+L+ H A
Sbjct: 262 TVPEEVRQISHIAMKRGYKFINTVKEGDEETHSQVSQMYMVAPLDLHFSILYNVLKKHIA 321

Query: 245 KNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++A    IVFC+T        +VL++    +  +    SQ  R+      R  +  + ++
Sbjct: 322 EDADYKVIVFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGLILVS 381

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G+
Sbjct: 382 SDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGK 421


>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
 gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 522

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 187/346 (54%), Gaps = 17/346 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I  ++ ++ +   T +Q+  +   L  KD++  A TGSGKT+AFG  +        
Sbjct: 9   IEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGIIQ------ 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL + PTRELA QV   L+       + VA   GGV+++ + R L+  A 
Sbjct: 63  -KIEKGNGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQIRQLER-AD 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DHI    +++  ++ +VLDEAD MLD+GF DD+E I+D  P  R+ +MFS
Sbjct: 121 VVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPSDRQTMMFS 180

Query: 187 ATISPAITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           AT+S  I  L+  Y  +  +V     + S+  +   ID     V    + + +V++L+  
Sbjct: 181 ATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKLKQVYID-----VPKKMKFSLLVHLLKSE 235

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   +VFC+TR++V    K L ++    +A+ G  +Q +R + L       A   + TD
Sbjct: 236 KSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHALVCTD 295

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+P +  V + ++  +P   +HR GRT RAGR+G  + V+
Sbjct: 296 VAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVV 341


>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 649

 Score =  190 bits (482), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/384 (34%), Positives = 198/384 (51%), Gaps = 51/384 (13%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE----------KDVLVSAQTGSGKTVAFGLALASTL 62
           +A+++ G+   TSVQ A +   ++            D+LVS+QTGSGKT AF L +  TL
Sbjct: 63  QAVADMGFTQPTSVQMATIPKAMQALDADPKAPKFTDLLVSSQTGSGKTAAFLLPVLHTL 122

Query: 63  LAE------------------------------------NDRFSPASAPLALAIAPTREL 86
           L +                                    N R   A+ P AL + PTREL
Sbjct: 123 LKQQEEAERNERAEFERLSAEAVARGEAPLKKPKRKDPTNMRNFKAATPGALILCPTREL 182

Query: 87  AVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           A QV  + ++ +    G+ VA  +GG+    +   LQN A +VV TPGRL D  R   + 
Sbjct: 183 AQQVCADAIDLVRHCRGLRVANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQIK 241

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA    +   
Sbjct: 242 LDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIMQLATRVMRQPQ 301

Query: 206 RVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
           RV I S + +H+ I  +++L A  ++ +   + + LR      AIVF  T+         
Sbjct: 302 RVEIDSPHEKHASI-TQSLLWADNMTHKRKLLDHWLRDTTINQAIVFACTQVECDGLAND 360

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +  F  VAL G L Q  R+  L   RDGR ++ +ATDVAARG+D+P +  VI+  L  
Sbjct: 361 LVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQILVATDVAARGLDVPTITHVINYGLPM 420

Query: 324 NPENLLHRSGRTGRAGRKGMSVFV 347
             E+ +HR GRTGRAGR+G ++ +
Sbjct: 421 KAEDYVHRIGRTGRAGREGQAITI 444


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 192 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENG 250

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 251 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 310

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 311 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 370

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 371 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 430

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 431 GKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 490

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 491 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 538

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 539 ERNINIT 545


>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 482

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 12/384 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +   +LA+  +  
Sbjct: 19  ISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRILADRIKPQ 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +  + L ++PTREL+ Q+            +   + IGGV + R+ R L  G  ++V 
Sbjct: 79  PKNCRV-LVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLMQGVEVLVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   L +  ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT+ 
Sbjct: 138 TPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   +D  RV +         I+ R + +  S +   +  IL+  G   A+VF
Sbjct: 198 KDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLAQILQQDGVNQALVF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L        A+ G  SQ  R   L   R G  R  +ATD+AARGID+
Sbjct: 258 TRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLFR----- 361
             +  V++ +L + PE  +HR GRT RAG +G ++ +     +    R  E+L R     
Sbjct: 318 DGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEEVGYLRDIEKLIRVALPK 377

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
           E + +   +PAPS     +R  QR
Sbjct: 378 EDHRTPGAKPAPSTAP--QRGGQR 399


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 173/332 (52%), Gaps = 5/332 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   +   GYV+ T VQ   +   L  +D++ SAQTG+GKT AF L + + L    
Sbjct: 8   LPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVLARLGGHR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTREL  QV          T V   +  GGV   ++R DL+ G  
Sbjct: 68  -----PGGPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLRAGTD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ T GRL D I+ K + +  ++ ++LDE D MLD+GF +D++ I+   PK+R+ L FS
Sbjct: 123 IVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQTLFFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI P I  +A+   ++  R+ I      +  + +    V    + + +  IL     ++
Sbjct: 183 ATIPPEIEDVARFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKLDYES 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L      V  L    SQ +R  AL+  ++GR  V +ATD+AAR
Sbjct: 243 VIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEVMVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           GID+  +  VI+ ++  NPE+ +HR GRTGRA
Sbjct: 303 GIDVAGVSHVINYDVPENPEDYVHRIGRTGRA 334


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 153 FPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLP-AVVHINNQ 211

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+        + T V      GG    ++ RDL+ G  
Sbjct: 212 PRLERGDGPIALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQQARDLERGVE 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 272 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT    +  LA+ +  + ++VNI S +   +    + V V   S++   +V +L     +
Sbjct: 332 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIAKLVQLLTQISGE 391

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + +ATD
Sbjct: 392 NETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATD 451

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L   
Sbjct: 452 VAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQV 511

Query: 360 FREANVSV 367
            REAN ++
Sbjct: 512 LREANQTI 519


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLPTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    +R+ +  +      I    V V   + + + + ++        A++FC T+  V
Sbjct: 231 KFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|323495931|ref|ZP_08100998.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
 gi|323319014|gb|EGA71958.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
          Length = 433

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 186/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AE 65
           PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQVI-EGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++   L+ G 
Sbjct: 77  HEGRKP-TQPRAIIMAPTRELAIQIFNDAEPLIASTGIKAALAYGGEPYEKQLAKLEEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK+R  +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 18/362 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PASA         
Sbjct: 243 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRK 302

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 303 AYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 362

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++    PK  +R+ LMFSAT
Sbjct: 363 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVDQRQTLMFSAT 422

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD + +++        +I  +   V   D+ + +++IL  H     +
Sbjct: 423 FPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTL 482

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT VAARG+
Sbjct: 483 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 542

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     +  +   R    L +EAN 
Sbjct: 543 DIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQ 602

Query: 366 SV 367
            V
Sbjct: 603 EV 604


>gi|29833596|ref|NP_828230.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29610720|dbj|BAC74765.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 498

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 132/380 (34%), Positives = 198/380 (52%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L+  
Sbjct: 63  DLPAELLKTLTSLGVNEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LVRT 119

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 120 AGQRAEARKPLALILVPTRELAQQVTDALTPYAQLLKLRLATVVGGMSIGRQASALRAGA 179

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I  K   +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 180 EVVVATPGRLADLIERKDCRLDRVSITVLDEADQMADMGFMPQVTELLDQVRPDGQRML- 238

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 239 FSATLDRNIDLLVRRYLHDPVVHSVDPSAGTVTTMEHHVLHVHGTDKFATATEIAARDG- 297

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V +FTK L     +  AL G  SQ +R+  L   R G     +AT+VA
Sbjct: 298 -RVLMFLDTKHAVDQFTKHLLGSGVKAAALHGGKSQPQRTRTLAQFRTGDITALVATNVA 356

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A 
Sbjct: 357 ARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMARLMSDAG 416

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           +       P +  +R  +A+
Sbjct: 417 IR------PQITQVRSGEAE 430


>gi|115438623|ref|NP_001043591.1| Os01g0618500 [Oryza sativa Japonica Group]
 gi|122228652|sp|Q0JL73|RH26_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 26
 gi|113533122|dbj|BAF05505.1| Os01g0618500 [Oryza sativa Japonica Group]
 gi|222618866|gb|EEE54998.1| hypothetical protein OsJ_02629 [Oryza sativa Japonica Group]
          Length = 536

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 189/340 (55%), Gaps = 16/340 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ +DVL  A+TG+GKTVAF L  A  LL+   R SP+
Sbjct: 87  KAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAF-LLPAIELLSTLPR-SPS 144

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
                L I PTRELA QV  E  + L     + V V IGG  + +E+R +Q N   I+V 
Sbjct: 145 IN--LLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVA 202

Query: 131 TPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGRL DH+    G    I  +K +VLDEAD +LD+GFR DIE I+   PK+R+ L+FSA
Sbjct: 203 TPGRLKDHLENTPGFSNRIKGVKVLVLDEADRLLDMGFRRDIEKIIAFIPKERQTLLFSA 262

Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   +  ++    K   + +N   E  +  HS +    ++  L    + + N+L+ H A
Sbjct: 263 TVPEEVRQISHIAMKRGYKFINTVKEGDEETHSQVSQMYMVAPLDLHFSILYNVLKKHIA 322

Query: 245 KNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++A    IVFC+T        +VL++    +  +    SQ  R+      R  +  + ++
Sbjct: 323 EDADYKVIVFCTTAMVTKLVAEVLSQLKLNIREIHSRKSQSARTKVSDEFRKSKGLILVS 382

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G+
Sbjct: 383 SDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGK 422


>gi|218188674|gb|EEC71101.1| hypothetical protein OsI_02885 [Oryza sativa Indica Group]
          Length = 536

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 132/344 (38%), Positives = 193/344 (56%), Gaps = 24/344 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ +DVL  A+TG+GKTVAF L  A  LL+   R SP+
Sbjct: 87  KAIKDAGYEKMTQVQEATLPIILQGEDVLAKAKTGTGKTVAF-LLPAIELLSTLPR-SPS 144

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
                L I PTRELA QV  E  + L     + V V IGG  + +E+R +Q N   I+V 
Sbjct: 145 IN--LLVICPTRELANQVAAEARKLLKYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVA 202

Query: 131 TPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGRL DH+    G    I  +K +VLDEAD +LD+GFR DIE I+   PK+R+ L+FSA
Sbjct: 203 TPGRLKDHLENTPGFPNRIKGVKVLVLDEADRLLDMGFRRDIEKIIAFIPKERQTLLFSA 262

Query: 188 TISPAITTLAKNYQKDAVR-VNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   +  ++    K   + +N   E  +  HS +    ++  L    + + N+L+ H  
Sbjct: 263 TVPEEVRQISHVAMKRGYKFINTVKEGDEETHSQVSQMYMVAPLDLHFSILYNVLKKHIT 322

Query: 245 KNA----IVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRAR 296
           ++A    IVFC+T    +  TK++AE LFQ    +  +    SQ  R+      R  +  
Sbjct: 323 EDADYKVIVFCTT----AMVTKLVAEVLFQLKLNIREIHSRKSQSARTKVSDEFRKSKGL 378

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + +++DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G+
Sbjct: 379 ILVSSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGK 422


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  L   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 50  GFEKPSAIQQRALKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 104 ILAPTRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQLDRGQHVVAGTPGRVFDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEAD+MLD GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 164 IRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSIQVVLISATLPHEILEMTT 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 224 KFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDLYDSLTITQAVIFCNTKRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++  +ER   ++  R G  RV I+TDV ARG+D+P + L+I
Sbjct: 284 DWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGVNRVLISTDVWARGLDVPQVSLII 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 NYDLPNNRELYIHRIGRSGRYGRKGVAI 371


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 186/344 (54%), Gaps = 10/344 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + A     +   
Sbjct: 24  ALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAGTAPRALNG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHI 127
            P AL + PTREL +QV  +L    + L A  G  ++V    GG     +   L+ GA +
Sbjct: 84  TPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAGADV 143

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ ++FSA
Sbjct: 144 VVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDRQSMLFSA 203

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   I TLA+ +  Q   +R         H + + Y     AL D+   +  +L+    
Sbjct: 204 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHAL-DKVELVSRVLQAESR 262

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +ATDVA
Sbjct: 263 GATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVA 322

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 323 ARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLV 366


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 52  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 106 ILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 286 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 NYDLPNNRELYIHRIGRSGRYGRKGVAI 373


>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 416

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 176/330 (53%), Gaps = 3/330 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q+A +   L   DV+  AQTG+GKT AF L L    L    R +   A   L
Sbjct: 20  GYQTATPIQKAAIPEVLAGHDVMAGAQTGTGKTAAFALPLIQRHLV---RDTSEKAIRVL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV +         G+   V  GG S++ +   L  G  ++V TPGRL + 
Sbjct: 77  VLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALNKGCDVLVATPGRLLEL 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
              + +++S ++ +VLDEAD MLD+GF  DIE IL   P+ R+ L FSAT +  + +L+K
Sbjct: 137 AFKELIDLSTVETLVLDEADRMLDMGFIVDIERILKRLPETRQTLFFSATFNDDVFSLSK 196

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              K    + +A  N   + I+ R   V    +   +  ++     +  ++F  T+ +V 
Sbjct: 197 TILKQPKLIEVAERNAMAAKIEQRFYEVDNQRKAGLVAYLIGSKNWQQVLIFTRTKQAVD 256

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L +      A+ G+ SQ  R   L+  + G+ R  +ATDVAARG+D+  L+ VI+
Sbjct: 257 ELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALVATDVAARGLDIQQLQYVIN 316

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            EL  N E+ +HR GRTGRAG+ G++V ++
Sbjct: 317 YELPYNAEDYIHRIGRTGRAGQAGLAVSLV 346


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 190/357 (53%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D ++      AL
Sbjct: 59  GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD-YNVVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRSDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  + ++    + +  NV V  E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDEKMLGDIQKFYNVVV--EELPS 407


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 185/354 (52%), Gaps = 9/354 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L ++     T +Q   L   L  +D++  A TGSGKT+ F L L    L    
Sbjct: 4   PKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLEAEI 63

Query: 68  R--FSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVV-AVC-IGGVSVHRERR 119
           R        P+ L I P+RELA Q    +    E+LY      + ++C IGG+S + + R
Sbjct: 64  RCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGISAYEQGR 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           ++Q G H++V TPGRL D +  K + +   + +  DEAD ++DLGF +++   LD    +
Sbjct: 124 EIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSNQ 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   AK+   + + +N+      + D+      V    + + ++ +L
Sbjct: 184 RQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLEVL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++FC  +  V    + L       VA+ G L Q ER  A+ + R+G+  + +
Sbjct: 244 QKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDILV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++   I +N +
Sbjct: 303 GTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 356


>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 179/331 (54%), Gaps = 5/331 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   GY   T +Q   + P L  KD++  AQTG+GKT +F L +   L +   R   A
Sbjct: 14  QAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDILASGRRR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTRELA QV    E    +  + +A+ IGGV +  + + L  G  +++ TP
Sbjct: 71  LMPRSLILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQVKALNEGVDVLIATP 130

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L ++  + +V+DEAD MLD+GF  DIE I    P+ R+ L+FSAT+ P
Sbjct: 131 GRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIETICSKLPEPRQTLLFSATMPP 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ +  +  R+ ++     + +I    + V   ++   +  +L     + AI+F 
Sbjct: 190 PIEKLAQKFLTNPKRIEVSRAASTNENITAFKIPVKAREKRETLRWLLANDHVETAIIFA 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V    K L  H F    + G++ Q  R   L   + G   + +A+DVAARG+D+ 
Sbjct: 250 NRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNILVASDVAARGLDIK 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  V + +   +P++ +HR GRTGRAG KG
Sbjct: 310 GVSHVFNFDTPWHPDDYVHRIGRTGRAGAKG 340


>gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus]
          Length = 669

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
            P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF   L L  T L 
Sbjct: 248 FPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITNLP 307

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 308 KIERLDEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRM 367

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 368 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 427

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 428 DNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTER 487

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 488 TEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLAKGLEKFGYNACTLHGGK 547

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 548 GQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 607

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 608 GKAGLAI 614


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 52  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 106 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 286 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 NYDLPNNRELYIHRIGRSGRYGRKGVAI 373


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    C+GG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    +R+ +  +      I    V V   + + + + ++        A++FC T+  V
Sbjct: 231 KFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKV 290

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 291 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 350

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 351 NYDLPNNRELYIHRIGRSGRYGRKGVAI 378


>gi|297797363|ref|XP_002866566.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312401|gb|EFH42825.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 721

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 31/396 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++      SP 
Sbjct: 266 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVK-----SPP 320

Query: 73  SAP-------LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-N 123
           ++P       LAL I PTRELA Q   E   L      + V V IGG  +  E++ +Q N
Sbjct: 321 TSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTN 380

Query: 124 GAHIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
              I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R
Sbjct: 381 PCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKER 440

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           +  +FSAT+   +  +     ++D   VN   E     H  +    ++ +L    + +  
Sbjct: 441 QTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYT 500

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +LR H   N     IVFC+T         +L E    V  +     Q  R+      R  
Sbjct: 501 LLREHIMDNVDYKVIVFCTTAMVTKLVADLLGEINLNVREIHSRKPQSYRTRVSNEFRKS 560

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + ++     
Sbjct: 561 KGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAP--- 617

Query: 354 RRAERLFREA--NVSVVWEPAPSVEAIRERDAQRIL 387
              E  F  +  ++ +   P PS++    +  Q+ L
Sbjct: 618 --WEECFLSSLKDLPITKSPLPSIDPETVKKVQKAL 651


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 9/357 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G H++VGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVHVIVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   +L+  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           + +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  N  V+ E  PS
Sbjct: 353 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYN--VIIEELPS 407


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 125/357 (35%), Positives = 192/357 (53%), Gaps = 11/357 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRF 69
           + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      F
Sbjct: 213 KTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASSF 272

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S    P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ 
Sbjct: 273 SELQEPEAVIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQIREISRGCNVLC 332

Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLM 184
           GTPGRL D I RGK + +S ++  VLDEAD MLD+GF  D+  ++ S    S + R+ LM
Sbjct: 333 GTPGRLLDVIGRGK-VGLSKVRYFVLDEADRMLDMGFEPDMRRLVGSPGMPSKENRQTLM 391

Query: 185 FSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  +A ++ K D + + +       SD++   V V    +   ++++L+  G
Sbjct: 392 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTTG 451

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT V
Sbjct: 452 MERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSV 511

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           AARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V F  P +  + A  L
Sbjct: 512 AARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFFDPDSDDQLARSL 568


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQ   + P L  +DV+  AQTG+GKT A+ L L + L  E+    P 
Sbjct: 20  DALYDMRFEKCTPVQARCIPPILEGRDVIGIAQTGTGKTAAYLLPLLTLLKQES---HPT 76

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A   L +APTRELA Q+ + L+   +     GV V     GV   +ER+ L+ GA IV+
Sbjct: 77  DAVNCLVMAPTRELAQQIDQALQGFGYYVDVNGVAVYGGNDGVRYEQERKSLKRGADIVI 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+     ++S    +VLDEAD MLD+GF DDI  I+   P++R+ ++FSAT+
Sbjct: 137 ATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQTILFSATM 196

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     +   V+IA  ++   +I     +   +D+   I ++      +  I+
Sbjct: 197 PAKIRELAHKIMHNPEEVSIAI-SKPAENIRQSLFICKENDKTAIIKHLFADQKPERVII 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC ++  V      L    + V A+  +L Q++R   +   + GR  + +ATD+ ARGID
Sbjct: 256 FCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDILVATDIVARGID 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+ LVI+ ++  + E+ +HR GRT RAGR G +V ++
Sbjct: 316 IDDITLVINYDVPRDAEDYVHRIGRTARAGRNGRAVTLV 354


>gi|238794074|ref|ZP_04637691.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
 gi|238726579|gb|EEQ18116.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
          Length = 451

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSLDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
          Length = 434

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 179/332 (53%), Gaps = 5/332 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP--L 76
           GY+  T VQ   +   L  +D+LV+AQTGSGKT  F L +   L  E    SPA+A    
Sbjct: 20  GYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVLQRLTLEG---SPAAANSVR 76

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA QV   +     +  +  AV  GGVS++ +   L+ G  ++V TPGRL 
Sbjct: 77  ALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMMLLRPGIDVLVATPGRLL 136

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D  R   +    L+ +VLDEAD MLDLGF  ++E +    P +R+ L+ SAT S  I  +
Sbjct: 137 DLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQRQTLLCSATFSEEIRQI 196

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A    +D + + I++ N     +    + V    +    +++L     +  +VF  TR  
Sbjct: 197 ATGLLRDPLTIEISAPNSAAPSVAQWMIPVDKKRKAELFLHLLERERWEQVLVFSRTRKG 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  + L +  ++  A+ G+L Q  R  AL+  +    +V +ATDVAARG+D+  L LV
Sbjct: 257 VERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQVLVATDVAARGLDIQGLPLV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +L   PE  +HR GRTGRAG  G ++ ++
Sbjct: 317 VNLDLPVAPEYYVHRIGRTGRAGASGEAISLV 348


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 194/357 (54%), Gaps = 21/357 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +     R
Sbjct: 222 EIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPILNQIYESGPR 281

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         PL L +APTRELA Q+  E      ++ +  AV  GG ++  + R
Sbjct: 282 PPPPQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMR 341

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSS 176
           +L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD+GF   I  I+  D+ 
Sbjct: 342 ELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRFLVLDEADRMLDMGFEPQIRRIVQEDNM 400

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   D+ + 
Sbjct: 401 PPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSY 460

Query: 235 IVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++++L+     +       +VF  T+       + LA   + V ++ G+ +Q+ER  AL+
Sbjct: 461 LLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRTQREREEALR 520

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  G++ 
Sbjct: 521 RFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLAT 577


>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 184/330 (55%), Gaps = 9/330 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIA 81
           T +Q   +   +  KD+L S++TGSGKT+AF L     +     R  P +   P  + + 
Sbjct: 25  TEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY----RSKPFTRRDPRVVILT 80

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA QV  +L  L A T     + +GG + + + + L+N    VV TPGRL DH+  
Sbjct: 81  PTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPMFVVATPGRLADHLEH 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATI-SPAITTLAKN 199
           +  ++  L+ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+ +  +  +A  
Sbjct: 141 RSTHLDGLEMLILDEADRMLDLGFAPELRRINEAANHRRRQTLMFSATLDNQEVIEIASE 200

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
              +  R++I     +H DI  R +L    D   A+++ +L        I+F +TRA   
Sbjct: 201 MLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKVLETTDYNQVIIFTATRADTD 260

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R T  L E   + VALSG L+Q +R++ +        ++ + TD+A+RG+D+ ++ LVI+
Sbjct: 261 RLTNELNERKLKAVALSGNLNQNQRNSIMSQFERNCHKILVTTDIASRGLDIDNVSLVIN 320

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++  + E  +HR GRTGRAG KG +V ++
Sbjct: 321 FDMPKHAEEYVHRVGRTGRAGNKGDAVSLV 350


>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
 gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
          Length = 639

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 8/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      
Sbjct: 10  EALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHP 69

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
               R  P  A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L 
Sbjct: 70  DREHRHGPRQA-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 353


>gi|331008996|gb|EGH89052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 157

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 158 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 213

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 214 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 273

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 274 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 334 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 394 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 442


>gi|330969256|gb|EGH69322.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 483

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|302341638|ref|YP_003806167.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638251|gb|ADK83573.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 490

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 192/342 (56%), Gaps = 4/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +   L++ GY + T +QE  +   L  KDV   AQTG+GKT AF + +   +L  
Sbjct: 30  NLPEPLLRGLADSGYTHCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYHML-- 87

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+ +    P AL IAPTRELAVQ+  + + +   T + +    GGV   ++ R L+ G 
Sbjct: 88  RDQRTDRQFPAALIIAPTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALREGV 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            IVV TPGR  D+I+ + L++  +K +V+DEAD + D+GF  D+ +I+   P   +R+ +
Sbjct: 148 DIVVATPGRAIDYIKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQSM 207

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   +  L   +     +V++A   R    +D      +  ++ + ++ +LR  G
Sbjct: 208 LFSATLGYRVLELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPEKMSLLLGLLRREG 267

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +T+ +V      L  +      +SG+L+Q+ R   L+  + G  ++ +AT+V
Sbjct: 268 VDRVMIFANTKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKILVATNV 327

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ + ++  VI+ ++ ++PE+ +HR GRT RAG  G ++
Sbjct: 328 AARGLHVENISHVINYDVPADPEDYVHRIGRTARAGAVGKAI 369


>gi|146077246|ref|XP_001463224.1| ATP-dependent DEAD/H RNA helicase [Leishmania infantum JPCM5]
 gi|134067308|emb|CAM65578.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania infantum
           JPCM5]
          Length = 485

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 175/329 (53%), Gaps = 4/329 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 136 PDAIHQAFMDAGFQKPTPIQSVAWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 195

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 196 -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 255 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 315 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 374

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 375 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 434

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG 333
           ARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 435 ARGLDIKDLDVVVNYDMPLNIEDYVHRIG 463


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 178/336 (52%), Gaps = 7/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   D +  AQ+G+GKT  F +A    +      +   S  + L
Sbjct: 47  GFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQII-----NYDVMSCQI-L 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 101 ILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAGVHMVVGTPGRVYDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  +LDEADEML  GF+  I+ +    P   ++ +FSAT+   I  L  
Sbjct: 161 IEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVALFSATMPNEILELTT 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + +   R+ +  +      I    +L+    +   + ++        AI++C+TR  V 
Sbjct: 221 KFMRSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQAIIYCNTRRKVD 280

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T  + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LVI+
Sbjct: 281 YLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 340

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +L  +P+N +HR GR+GR GRKG+++ FV  Q+M+
Sbjct: 341 YDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDME 376


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 211/441 (47%), Gaps = 22/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + L+ E
Sbjct: 296 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMRE 355

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 356 GVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIV 415

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 416 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 475

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    V +    +   +V 
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVE 535

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 536 ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 595

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 596 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 655

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G+       + A  D  K 
Sbjct: 656 QPL-----VKVLTDAQQDVPAWLEEIAFSTYT-PGFSGSTRGN-------MFASVDTRKN 702

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG    +  TPV
Sbjct: 703 YQGKSTLNTAGFSTSQTPTPV 723


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 151/484 (31%), Positives = 235/484 (48%), Gaps = 48/484 (9%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + GY   T +Q   +   L + D+L  AQTG+GKT AF L +   +L+  +R  PA  
Sbjct: 17  LEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPILHHILS--NRIIPAPR 74

Query: 75  PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA Q+    +      G+ +A   GGV    + + LQ G  I+V TPG
Sbjct: 75  SCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQYKALQGGIDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DHI  K +++  ++ +VLDEAD+MLD+GF   I  +    P +R+ L FSAT+   I
Sbjct: 135 RLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPAQRQNLFFSATMPKEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFC 251
             LA     +  +V I  E      +  + + +    R  A+++ L Y   K A  ++F 
Sbjct: 195 AGLANELLTNPKKVEITPEATTAERVTQQVIFIE-QQRKRALLSEL-YADEKLARTLIFT 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R    L     +  A+ G+ +Q +R  ALQ  + GR R  +ATD+AARGID+ 
Sbjct: 253 RTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRALVATDIAARGIDVD 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVV 368
           ++  VI+ EL    E  +HR GRT RAG++G S+ ++  +   + +  ER+ R+   S  
Sbjct: 313 NVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKDIERITRQRIPS-- 370

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKH-DPEKIAAGFLRIH 424
           W+        R +D    L D   L S Q ++ K  D ++   A+H DP+       R+H
Sbjct: 371 WD--------RRKDQALKLLDEAILASGQTEKPKTPDRVVEKTARHLDPDA-----ERVH 417

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL--SVGSKQKAEAR 482
           +     P               RD+ R     G   DN +G   F    + G++ + +AR
Sbjct: 418 KRSRNRPN--------------RDERRG---NGRDGDNSRGERTFGKKDAFGNRAERQAR 460

Query: 483 WLMP 486
           +  P
Sbjct: 461 FERP 464


>gi|238759754|ref|ZP_04620912.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
 gi|238701986|gb|EEP94545.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
          Length = 452

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218]
          Length = 435

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQV+ E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A    LL   E
Sbjct: 18  PQVV-EGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFHHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +   P + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 77  IEGRQP-TQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK R  +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +    +    I       +   +   +  +L    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPTQKTGHRIKEELFYPSNEHKMALLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+    +    LA    +V  L+G++ Q++R   L+    G   V +ATDV
Sbjct: 256 PDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILEQFTKGELDVLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
 gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 198/379 (52%), Gaps = 12/379 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY + T +Q+  +   L + D+  +AQTG+GKT AF L +   L   N       
Sbjct: 15  AIKELGYEHPTLIQKRAIPLVLAKSDIFATAQTGTGKTAAFALPILQKL--RNTTADENR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ ++PTREL++Q+  +++       +  A+ +GG  +  ++R L+ G  IV+GTPG
Sbjct: 73  TIRAVILSPTRELSIQIHEDVKNYSKHMSLTSAILVGGKDIEAQQRMLKTGIDIVIGTPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  + +  KGL+I++++  V+DEAD MLD+GF  +I  I    P++ + L+FSAT S  +
Sbjct: 133 RFME-LMDKGLDITNIEVFVVDEADRMLDMGFSKEIRRIHLQLPRRHQTLLFSATYSDKV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K        +  A +N     I+  A +V    +   +  ++        +VF  T
Sbjct: 192 RKLSKQILTKPAFIETAKKNTTVDTINQVAYMVDTDRKAELLAYLIGSRNFPQVLVFTKT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + S       L +   +   + G+ +Q  R   L   ++G+ RV +ATD+A+RG+D+ +L
Sbjct: 252 KVSADALFIELKKDGLKCGIIHGDKTQANRQKTLTQFKEGQIRVLVATDIASRGLDIEEL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF---VIPQNMQRRAERLFREANVSVV-- 368
             VI+ EL S PE+ +HR GRTGRAGR G ++    V  +   +  ERL  +     V  
Sbjct: 312 PYVINYELPSIPEDYVHRVGRTGRAGRDGQAISLLDVYDKYNIKDVERLIGQKIPQEVVE 371

Query: 369 -WEPAPSVEAIRERDAQRI 386
            +EP P+   IR +D   +
Sbjct: 372 GFEPDPT---IRRKDEDEV 387


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 189/362 (52%), Gaps = 18/362 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-----------A 72
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          P            
Sbjct: 242 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFITGPSVVPNGQAGNFGRQRK 301

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 302 AYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 361

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++        +R+ LMFSAT
Sbjct: 362 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVNERQTLMFSAT 421

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  HGA   +
Sbjct: 422 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTHGAGLTL 481

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT VAARG+
Sbjct: 482 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 541

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S     +  +   R    L +EAN 
Sbjct: 542 DIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFNRGNRGVVRELIDLLKEANQ 601

Query: 366 SV 367
            V
Sbjct: 602 EV 603


>gi|238763827|ref|ZP_04624785.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
 gi|238697957|gb|EEP90716.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
          Length = 452

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 187/351 (53%), Gaps = 13/351 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           I ENI  +    L++ G    T++QE  +   L  KDV+  A+TG+GKT+AF L +   +
Sbjct: 8   INENIVNI----LNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNI 63

Query: 63  LAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                  SP  +    L ++PTRELA+Q+  E + L     + +    GG  +  + + L
Sbjct: 64  -------SPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++  H+V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+  + KK +
Sbjct: 117 KHNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   +  LA  Y  D + ++I S       I  + V      + +++   L+ 
Sbjct: 177 TLCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC T+         L +       +  ++ Q +R   ++  R+   +  IAT
Sbjct: 237 DNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           DVAARGID+  +  + + +    PE+ +HR GRTGRAG  G + +FV P++
Sbjct: 297 DVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKD 347


>gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 526

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 191/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL
Sbjct: 143 FKLAPELM-HAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLL 201

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+  +   L   TG+ V   +GG+   ++ + 
Sbjct: 202 ETPPPKERY--MGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQ 259

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++    I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 260 LESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 319

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N
Sbjct: 320 SERQTLLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYN 379

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV
Sbjct: 380 LITQNDWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRV 439

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 440 LVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSI 487


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 188/349 (53%), Gaps = 13/349 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQ-EAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64
           I + + + L + G    T VQ E+I  P ++   D++  AQTG+GKT+AF       LL 
Sbjct: 8   INEALVKILKDTGITEPTPVQSESI--PHIKAGGDLIGEAQTGTGKTLAF-------LLP 58

Query: 65  ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +  SP    + AL + PTRELA+Q+  +   L     + +    GG  +  + + L+N
Sbjct: 59  IFENISPTVNNVQALILTPTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLKKLKN 118

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             H+++ TPGRL DHI  K +++S LK  VLDEAD+ML +GF++++E I+  + KKR+ L
Sbjct: 119 NIHLIIATPGRLLDHIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTSKKRQTL 178

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT++  +  LA  Y  D + V I  E    S I    V      + NA+  +L    
Sbjct: 179 CFSATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTIKQHVVETTDRRKQNALCAVLDEDN 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+FC T+         L +  +    L  ++ Q +R   ++  R+   +  IATDV
Sbjct: 239 PFMAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLIATDV 298

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           AARG+D+  +  + + ++  + E+ +HR GRTGRAG +G + +F+ P+N
Sbjct: 299 AARGLDISGVTHIYNYDIPESVESYIHRIGRTGRAGEEGYTCLFIDPKN 347


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 187/352 (53%), Gaps = 8/352 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L    ++  T VQ A + P L  +DV+  AQTG+GKT A+ L +   L A 
Sbjct: 7   NLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDRLSA- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              F+ +    A+ +APTRELA Q+ +++E   +    + V +     GV+  ++RR + 
Sbjct: 66  -GEFA-SDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGMA 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  H+     ++SH+   VLDEAD MLD+GF DDI  I    P   + 
Sbjct: 124 MGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I  LA +  +D + V IA  +R    I   A +   + +   +  +    
Sbjct: 184 VMFSATMPPKIRKLAASILRDPIEVEIAI-SRPPESIMQSAYICYEAQKLPILRKLFEQS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F S +  V   T  L +  F V  +  +L Q +R   ++  ++G   V +ATD
Sbjct: 243 APKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQ 353
           + ARGID+ ++ +VI+ ++  +PE+ +HR GRT R    +G+++  + +  Q
Sbjct: 303 IVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQ 354


>gi|92115299|ref|YP_575227.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
 gi|91798389|gb|ABE60528.1| ATP-dependent RNA helicase DbpA [Chromohalobacter salexigens DSM
           3043]
          Length = 465

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 199/361 (55%), Gaps = 13/361 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY  +T +Q   L   L  +DV+   QTGSGKT AFGL + + L  +  R        AL
Sbjct: 27  GYHAMTPIQAESLPAILAGRDVIGQGQTGSGKTAAFGLGVLAKLEVKAFRVQ------AL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV  E+  L    G V V    GG  +  +R  L++GAH+VVGTPGR+ +
Sbjct: 81  VLCPTRELADQVAGEVRRLARGLGNVKVLTLCGGAPLKPQRDSLEHGAHVVVGTPGRIEE 140

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R   L +  L  +VLDEAD MLD+GF+  IE I+  +P  R+ L+FSAT    I  +A
Sbjct: 141 HLRKGSLTLGALTTLVLDEADRMLDMGFQAAIETIVGQTPTSRQTLLFSATYGEGIRPVA 200

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTR 254
           +   ++ + V +AS    H D   R     ++D   R  A+  +L  H  ++++VFC+T+
Sbjct: 201 ERLMREPLAVEVAS---THDDTSIRQHFFRVADEEARLPALERLLLSHRPESSVVFCNTK 257

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  + L    F  +AL+G+L Q +R   L M  +    V +ATDVAARG+D+  L+
Sbjct: 258 RETQQVAEALNAAGFSALALNGDLEQPDRDRILAMFANKSVSVLVATDVAARGLDIDALD 317

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            V + +++   E  +HR GRTGRAG +G++  ++ +  + R E+L       +  EP P+
Sbjct: 318 AVFNYQIARELEVHVHRIGRTGRAGGRGVACTLVAEGERYRLEKLGDFLGEPLACEPLPT 377

Query: 375 V 375
           +
Sbjct: 378 L 378


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 180/333 (54%), Gaps = 17/333 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +++   +   L E          
Sbjct: 60  GFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQKININLKETQ-------- 111

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL +APTRELA Q+ + +  +     + V  C+GG +V  +   LQ G HIVVGTPGR+
Sbjct: 112 -ALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQGVHIVVGTPGRV 170

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I    L    +K  VLDEADEML  GF+D I  +    P+  ++ +FSAT+   +  
Sbjct: 171 GDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLE 230

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCS 252
           + + + +D +R+ +  +      I  +   VA+   +   + + ++        AI++C+
Sbjct: 231 VTQKFMRDPIRIMVKRDELTLEGI--KQFFVAIEREEWKFDTLCDLYETLTITQAIIYCN 288

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  
Sbjct: 289 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 348

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LV++ +L  N EN +HR GR+GR GRKG+++
Sbjct: 349 VSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAI 381


>gi|226497588|ref|NP_001145834.1| hypothetical protein LOC100279341 [Zea mays]
 gi|219884609|gb|ACL52679.1| unknown [Zea mays]
          Length = 560

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 194/355 (54%), Gaps = 19/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L A      P 
Sbjct: 111 KAIKDAGYERMTRVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEVLSA-----LPR 165

Query: 73  SAPL-ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVV 129
           S  +  L + PTRELA Q+  E  + L     + V V IGG  + +E+R +Q N   I+V
Sbjct: 166 STSINLLVMCPTRELANQLAAEARKLLKYHRSLGVQVVIGGTRLPQEQRSMQANPCQILV 225

Query: 130 GTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            TPGRL DH+    G    I  +K +VLDEAD +LD+GFR DIE I+   PK R+ L+FS
Sbjct: 226 ATPGRLKDHLENTPGFSTRIRGVKVLVLDEADRLLDMGFRRDIEKIITFIPKDRQTLLFS 285

Query: 187 ATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+S  I  ++    +KD   +N   E  +  H+ ++   ++  L      + ++L+ H 
Sbjct: 286 ATVSEEIHQISHLAMRKDYDFINAVQEGDEETHAQVNQTYMVAPLGLHLPILYDVLKKHV 345

Query: 244 AKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           A++A    IVFC+T        +VL++    +  +    +Q  R+      R  +  + +
Sbjct: 346 AEDAEYKVIVFCTTAMVTRLVAEVLSQLKLNIREIHSRKTQSARTKVSDEFRKSKGLILV 405

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
           ++DV+ARG+D PD+ LV+   L ++ E  +HR GRTGR G++G  + ++ P  M 
Sbjct: 406 SSDVSARGVDYPDVTLVMQVGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEMH 460


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT  F +   S L A + +     A   L
Sbjct: 47  GFEKPSAIQQRSIKPIIEGRDVIAQAQSGTGKTATFSI---SVLQAIDTQLRETQA---L 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG +V  + R L  G HIV G+PGR+ D 
Sbjct: 101 IMSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGSPGRVFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  + +
Sbjct: 161 IRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLPPSTQVVLLSATLPHDILEMTR 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 221 KFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER   ++  R G +RV I TDV ARGID+  + LVI
Sbjct: 281 DWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLITTDVWARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 341 NYDLPNNRELYIHRIGRSGRYGRKGVAI 368


>gi|289628603|ref|ZP_06461557.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647202|ref|ZP_06478545.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867826|gb|EGH02535.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 157

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 158 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 213

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 214 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 273

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 274 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 334 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 394 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 442


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/344 (37%), Positives = 186/344 (54%), Gaps = 10/344 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + A     +   
Sbjct: 24  ALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAGTAPRALNG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHI 127
            P AL + PTREL +QV  +L    + L A  G  ++V    GG     +   L+ GA +
Sbjct: 84  TPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALRAGADV 143

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ ++FSA
Sbjct: 144 VVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDRQSMLFSA 203

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T+   I TLA+ +  Q   +R         H + + Y     AL D+   +  +L+    
Sbjct: 204 TMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHAL-DKVELVSRVLQAESR 262

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +ATDVA
Sbjct: 263 GATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVATDVA 322

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++
Sbjct: 323 ARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLV 366


>gi|251793198|ref|YP_003007926.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534593|gb|ACS97839.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 433

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 193/349 (55%), Gaps = 11/349 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL+ +G+   T +Q   L   L+ KDV   AQTG+GKT+AF  AL   
Sbjct: 25  FADLPLHPLVLQALTTKGFDFCTPIQALSLPVTLQGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 62  LLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           LL    E D+    + P AL +APTRELAVQ+  + +     T    A+  GG    ++ 
Sbjct: 85  LLTHPTETDK----NQPRALVLAPTRELAVQIEHDAQIFLKTTQFKTALAYGGDGYDKQL 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--S 176
           + ++NG  +++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    S
Sbjct: 141 KAIENGVDVLIGTTGRVIDYVKQGIIRLDRIQVVVLDEADRMFDLGFIRDIRYLLRKCPS 200

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  ++FSAT+S  +  LA     D   V IA E +    I       +  D+   ++
Sbjct: 201 PQQRLTMLFSATLSYKVRELAFEDMNDPEYVEIAPEQKTGRQIKEELFYPSNQDKIRLLL 260

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     +  I+F +T+         LA    +V  L+G+++Q++R + L+   DG   
Sbjct: 261 TLLEEEWPERCIIFANTKHQCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELD 320

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 321 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISI 369


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L      + A+      
Sbjct: 219 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHRRGPEAEATRGLGRQ 278

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 279 QKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 338

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    ++++H++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 339 TPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFS 398

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R V   +  D+D+A+++IL      
Sbjct: 399 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVECESDKDKDSALLDILCTDSTG 458

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 459 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 518

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFR 361
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L +
Sbjct: 519 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSMVDLLK 578

Query: 362 EANVSV 367
           +AN  V
Sbjct: 579 DANQEV 584


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 177/330 (53%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  L P ++ +DV+  AQ+G+GKT    L     +   N          AL
Sbjct: 53  GFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTACQLVDTANREVQ------AL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     + V  CIGG SV  + R L+ G H+V GTPGR+CD 
Sbjct: 107 ILSPTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    ++ +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 167 IKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D V++ +  +      I  +   VA+   +     + ++        A++FC+T+ 
Sbjct: 227 KFMTDPVKILVKRDELTLEGI--KQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKR 284

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 285 KVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGETRVLITTDVWARGLDVQQVSL 344

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 52  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 106 ILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 286 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 NYDLPNNRELYIHRIGRSGRYGRKGVAI 373


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 189/365 (51%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q++ E ++  GY  LT VQ+  +   L  +D++  AQTGSGKT AF + + + +L +
Sbjct: 220 NLCQILMENIARAGYFKLTPVQKHSIPIVLAGRDLMACAQTGSGKTAAFLIPILAHMLRD 279

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                 F     P  + +APTREL  Q+  E       T V   V  GG+ +      + 
Sbjct: 280 GITATHFKEQQEPECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGHTIHQIM 339

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I    + ++ LK +VLDEAD MLD+GF  D++ ++ S    S  
Sbjct: 340 QGCNILCATPGRLLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLISSPGMPSKD 399

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K D + V +       SD++   + V   D+   ++ 
Sbjct: 400 QRQTLMFSATFPEEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQVNQYDKREKLLE 459

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G +  +VF  T+         L +      ++ G+  Q+ER  ALQ  R G+  V
Sbjct: 460 ILNAIGKERTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRSGKCPV 519

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 520 LVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGKAISFFDPRSDSSIA 579

Query: 357 ERLFR 361
           + L +
Sbjct: 580 QPLVK 584


>gi|294632189|ref|ZP_06710749.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292835522|gb|EFF93871.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 473

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 196/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS+ G      +Q A L   L+ +DVL   +TGSGKT+AFGL L   L   
Sbjct: 34  ELPVEVLRTLSDLGVREPFPIQAATLPDALKGRDVLGRGRTGSGKTLAFGLPL---LTRT 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG S+ R+   L+ GA
Sbjct: 91  AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGTSIGRQVAALRQGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  +   VLDEAD+M DLGF   +  +LD   P  +RML 
Sbjct: 151 EVVVATPGRLHDLIERNACRLGRVGITVLDEADQMCDLGFLPQVADVLDQVHPDGQRML- 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  ++V   DR   I  I    G 
Sbjct: 210 FSATLDRDVDQLVRRYLHDPVVHSVDPSTGTVTTMEHHVLVVHDPDRYAVITEIAARDG- 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +ATDVA
Sbjct: 269 -RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQITVLVATDVA 327

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A 
Sbjct: 328 ARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVSAGRRRETSRMMAGAG 387

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           +       P+V  +R  +A+
Sbjct: 388 IE------PTVTKVRSGEAE 401


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 186/340 (54%), Gaps = 2/340 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL + GY   + +Q+ ++   L  +DV+ +AQTG+GKT  F L +   L +E  R
Sbjct: 10  QPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPILQRL-SEGKR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S  SA   L + PTRELA QV + ++   A   +   V  GGV ++ +   L+ G  ++
Sbjct: 69  PSANSA-RCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKLRRGTDVL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    +  + L+ +VLDEAD MLD+GF   I+ I+   PKKR+ L+FSAT
Sbjct: 128 VATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQTLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S +I  +++ +  +   V     N   + +      V    +   +  ++ +H     +
Sbjct: 188 FSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPVDKKQKPALLSYLIGHHRWDQLL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR   ++ +  L +   +  A+ G  SQ  R+ AL   + G+  V +ATDVAARG+
Sbjct: 248 VFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVATDVAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  + LVI+ +L +  E+ +HR GRTGRAG KG ++ ++
Sbjct: 308 DIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLV 347


>gi|157864458|ref|XP_001680939.1| ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 502

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 175/329 (53%), Gaps = 4/329 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 153 PDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 391

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG 333
           ARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 452 ARGLDIKDLDVVVNYDMPLNIEDYVHRIG 480


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 178/333 (53%), Gaps = 6/333 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q+  +   L  +DVL  AQTG+GKT AF L + + L     R   A  P  L
Sbjct: 20  GYTAPTPIQDQAIPHVLAHRDVLGIAQTGTGKTAAFVLPMLTLLEKGRAR---ARMPRTL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV    +       + VA+ IGGVS   +   L  G  +++ TPGRL DH
Sbjct: 77  ILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLTRGVDVLIATPGRLLDH 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
               GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+AT+   I  +  
Sbjct: 137 TERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEIRRVTD 196

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK---NAIVFCSTRA 255
            +  +  ++ ++      + +    V       +   +       AK   NAI+FC+ + 
Sbjct: 197 AFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLRDAKDLKNAIIFCNRKR 256

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V+   K L +H F V AL G++ Q  R+ +L   R G   + +A+DVAARG+D+P++  
Sbjct: 257 DVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDVAARGLDIPEVSH 316

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V++ ++  +P++ +HR GRTGRAGR G ++ ++
Sbjct: 317 VLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIV 349


>gi|330837277|ref|YP_004411918.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329749180|gb|AEC02536.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 629

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 205/401 (51%), Gaps = 16/401 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + E + + G+ +   VQE +L   L  KDV++ ++TGSGKT  F + +   
Sbjct: 3   FTELPLHHTVLEGIGQAGFSDCMPVQERVLPVSLAGKDVMIQSKTGSGKTAVFLITILEK 62

Query: 62  LLAENDRF------SP---ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGG 111
            +   +        SP    S P+AL ++PTRELAVQ+  +   L A   G  V    GG
Sbjct: 63  YVRAAEERAKAAKDSPEAEKSLPVALIVSPTRELAVQIEEDARILSATLPGYRVGCFYGG 122

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           V    + + +  G  + VGTPGRL D+ + + L+       V+DEAD M D+GF  DI+ 
Sbjct: 123 VGYGGQDKLIAEGCDLYVGTPGRLLDYHKMRRLDFRMFDTFVVDEADRMFDMGFYPDIQK 182

Query: 172 ILDS--SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +  S     +R+ ++FSAT+S  +  LA +Y      + +  E    + I      ++  
Sbjct: 183 MFSSMRPVSERQTMLFSATLSTRVRNLAWSYMSSPEEIEVQPEEITVNKIQQELYHISKD 242

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++    + +L      NA++F +T+A      K L  + ++   L G++ Q++R + +  
Sbjct: 243 EKFRLFLQVLTKENPDNALIFTNTKAKSVEVCKRLLLNGYKAEYLMGDMPQKKRLSTIDR 302

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           M+DG+ +  +ATDVAARG+ + DL+LV++ ++  + EN +HR GRT RAG+ G S+    
Sbjct: 303 MKDGKIKFLVATDVAARGLQIDDLQLVVNYDIPEDFENYVHRIGRTARAGKTGKSITFAD 362

Query: 350 QNMQRRAERL--FREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +      E +  + +  + VVW    S+  + ++ A +  +
Sbjct: 363 EEYIYGLEAIENYIQMKIPVVWPEEGSLPDVEDKSAGKTFR 403


>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 517

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 185/334 (55%), Gaps = 9/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + N T +Q   +   L  +DV+  A+TGSGKT AF L +  +LL +            L 
Sbjct: 107 FKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQSLLEKPQPL------FGLI 160

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+ ++++ L +   V  A  +GG+ +  +   L    HIVV TPGRL DH+
Sbjct: 161 LAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHL 220

Query: 140 RG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLA 197
              KG ++ HLK +VLDEAD +LDL F   ++ IL   P++ R   +FSAT+S  + +L 
Sbjct: 221 ENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVESLQ 280

Query: 198 KNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   ++ VRV+I+S + Q  S +  R   +    +D  +V++L  +     I+F  T   
Sbjct: 281 RAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDLYLVHLLNDNIGHPTIIFTRTVNE 340

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R   +L    F  + L G+LSQ  R  AL   +     + +ATDVAARG+D+P ++L+
Sbjct: 341 TQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDLI 400

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++ +L S+ +  +HR GRT RAG+ G +V  + Q
Sbjct: 401 VNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQ 434


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 180/333 (54%), Gaps = 17/333 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +++   +   L E          
Sbjct: 111 GFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQKININLKETQ-------- 162

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL +APTRELA Q+ + +  +     + V  C+GG +V  +   LQ G HIVVGTPGR+
Sbjct: 163 -ALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQGVHIVVGTPGRV 221

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I    L    +K  VLDEADEML  GF+D I  +    P+  ++ +FSAT+   +  
Sbjct: 222 GDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLE 281

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCS 252
           + + + +D +R+ +  +      I  +   VA+   +   + + ++        AI++C+
Sbjct: 282 VTQKFMRDPIRIMVKRDELTLEGI--KQFFVAIEREEWKFDTLCDLYETLTITQAIIYCN 339

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  
Sbjct: 340 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 399

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LV++ +L  N EN +HR GR+GR GRKG+++
Sbjct: 400 VSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAI 432


>gi|332010396|gb|AED97779.1| DEAD-box ATP-dependent RNA helicase 31 [Arabidopsis thaliana]
          Length = 788

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 196/394 (49%), Gaps = 27/394 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++      SP 
Sbjct: 333 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVK-----SPP 387

Query: 73  SAP-------LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-N 123
           ++P       LAL I PTRELA Q   E   L      + V V IGG  +  E++ +Q N
Sbjct: 388 TSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTN 447

Query: 124 GAHIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
              I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R
Sbjct: 448 PCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKER 507

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           +  +FSAT+   +  +     ++D   VN   E     H  +    ++ +L    + +  
Sbjct: 508 QTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYT 567

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +LR H   N     IVFC+T         +L E    V  +     Q  R+      R  
Sbjct: 568 LLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKS 627

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + ++    +
Sbjct: 628 KGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWEE 687

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
                L    ++ +   P PS++    +  Q+ L
Sbjct: 688 YFLSSL---KDLPITKSPLPSIDPETVKKVQKAL 718


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 187/351 (53%), Gaps = 13/351 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           I ENI  +    L++ G    T++QE  +   L  KDV+  A+TG+GKT+AF L +   +
Sbjct: 8   INENIVNI----LNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNI 63

Query: 63  LAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                  SP  +    L ++PTRELA+Q+  E + L     + +    GG  +  + + L
Sbjct: 64  -------SPDTNGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++  H+V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+  + KK +
Sbjct: 117 KHNVHLVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   +  LA  Y  D + ++I S       I  + V      + +++   L+ 
Sbjct: 177 TLCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC T+         L +       +  ++ Q +R   ++  R+   +  IAT
Sbjct: 237 DNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           DVAARGID+  +  + + +    PE+ +HR GRTGRAG  G + +FV P++
Sbjct: 297 DVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKD 347


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 15/360 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 59  GFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L    +K  VLDEADEML  GF+D I  I    P+K ++ +FSAT+ P    + +
Sbjct: 173 LRRNALRADAIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +    V++ +  +      I    V V   DR+    + + ++        +++F +TR
Sbjct: 233 KFMNKPVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTR 289

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 290 RKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 349

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVI+ +L + PEN LHR GR+GR GRKG+++  + ++  R  + + R  N   V E  PS
Sbjct: 350 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQDIQRFYN--TVIEELPS 407


>gi|123443103|ref|YP_001007077.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090064|emb|CAL12927.1| putative ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 451

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|302673650|ref|XP_003026511.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
 gi|300100194|gb|EFI91608.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
          Length = 437

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 23/363 (6%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S +G+   T +Q     P L  +DV+  A+TGSGKT+AFG+ L + L+      + ++  
Sbjct: 22  SFKGFKEPTPIQACTWPPALEGRDVVGIAETGSGKTLAFGIPLLNRLITSRSTTTQSAPV 81

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG--------AHI 127
            AL +APTRELA+Q    L  L    G+      GGV    + R L+N           +
Sbjct: 82  TALVVAPTRELAIQTHDTLSALGKPFGIASVAVFGGVPKEPQVRMLRNANKGKDGMTTRV 141

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMF 185
           VVGTPGR+ D +     ++ ++  +VLDEAD MLD GF +DI  I+ ++    +R+ LMF
Sbjct: 142 VVGTPGRILDLMNDGACDLGNVDYLVLDEADRMLDKGFENDIRNIISATKPLAERQTLMF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYH 242
           SAT   ++  LA  +Q + VRV + S++   ++     ++  L D   +D+ +  +LR  
Sbjct: 202 SATWPDSVRKLASTFQNNPVRVTVGSDDLT-ANSRVEQIVEVLDDGRQKDSRLTALLRNA 260

Query: 243 GAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             K           +VF   +   SR  + L    F V  LSG++SQ  R  AL+  + G
Sbjct: 261 NLKKVAAGMDESRVLVFALYKKECSRVEQNLRRQGFSVGGLSGDMSQSARIEALEAFKTG 320

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ ++ LV++       E+ +HR GRTGR G+ G S+        
Sbjct: 321 KTNLLVATDVAARGLDIANVGLVVNYTFPLTIEDYIHRIGRTGRGGKSGKSITFFTGEGH 380

Query: 354 RRA 356
            RA
Sbjct: 381 ERA 383


>gi|298485798|ref|ZP_07003877.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159824|gb|EFI00866.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 484

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 159

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 160 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 215

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 216 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 275

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 276 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 335

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 336 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 396 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 444


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 189/362 (52%), Gaps = 18/362 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PASA         
Sbjct: 218 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRK 277

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 278 AYPTALILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 337

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++    PK   R+ LMFSAT
Sbjct: 338 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSAT 397

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD + +++        +I  +   V   D+ + +++IL  H     +
Sbjct: 398 FPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEYVEDIDKRSVLLDILHTHAGGLTL 457

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT VAARG+
Sbjct: 458 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGL 517

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     +  +   R    L +EAN 
Sbjct: 518 DIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQ 577

Query: 366 SV 367
            V
Sbjct: 578 EV 579


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 194/367 (52%), Gaps = 9/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 105 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILP- 163

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A+  +    R S    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 164 ATVHINHQPRLSRGDGPIVLILAPTRELAQQI-QSVARDFGSSSCIRNTCIFGGSPKGPQ 222

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 223 ARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 282

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S     + +I     +    +++  + 
Sbjct: 283 PDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLS 342

Query: 237 NILRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           N+LR  G       I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G
Sbjct: 343 NLLREIGKDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNG 402

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  
Sbjct: 403 KTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 462

Query: 354 RRAERLF 360
           R+A+ L 
Sbjct: 463 RQAKELI 469


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 201/360 (55%), Gaps = 11/360 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ + + L ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A+  ++ 
Sbjct: 113 NFPESVVQELKKQGFSEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AAVHISN 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            +       P+AL +APTRELA Q+ + +  +++ +  +   CI GG     +  DLQNG
Sbjct: 172 QEPLQRGDGPIALVLAPTRELAQQI-QSVAKMFSSS--IRNTCIFGGTPKGPQAHDLQNG 228

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++     R++LM
Sbjct: 229 VEIVIATPGRLIDFLERGSTNLKRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 288

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNIL---- 239
           +SAT    +  LA ++  D +++N+ S E   + +I     +    ++D  + ++L    
Sbjct: 289 WSATWPKEVQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKDYKLFDLLMKIS 348

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G K AI+F   +  V   T+ +    +   ++ G+ SQQ+R + L   R+G++ + +
Sbjct: 349 NEPGFK-AIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVLNEFRNGKSPILV 407

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR+ + G++      N  R+A+ L
Sbjct: 408 ATDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSKQAGIAYTFFSTNNMRQAKDL 467


>gi|332161012|ref|YP_004297589.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604884|emb|CBY26382.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665242|gb|ADZ41886.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 451

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|71737101|ref|YP_273396.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557654|gb|AAZ36865.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 187/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NIAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 157

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 158 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 213

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 214 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 273

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 274 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G    +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 334 NLVTDNGWGRVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 394 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 442


>gi|301169611|emb|CBW29212.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 415

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 189/348 (54%), Gaps = 4/348 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   KRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYRHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   +G   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTNGYLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 309 LVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|262038471|ref|ZP_06011845.1| DEAD-box ATP-dependent RNA helicase YdbR [Leptotrichia goodfellowii
           F0264]
 gi|261747566|gb|EEY35031.1| DEAD-box ATP-dependent RNA helicase YdbR [Leptotrichia goodfellowii
           F0264]
          Length = 484

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 191/368 (51%), Gaps = 13/368 (3%)

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG S+  + + L++G  IVVGTPGR+ D +R K L +++L   VLDEADEML++GF +DI
Sbjct: 5   GGASIENQIKKLKSGVDIVVGTPGRVMDLMRKKVLKVNNLDYFVLDEADEMLNMGFIEDI 64

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           E IL+ +  +++ML FSATI   I ++AK +  D   + +  E       +     V   
Sbjct: 65  ELILEETNDEKKMLFFSATIPKTIMSIAKKFMNDYKLLKVKKEELTTDLTEQIYYEVKQE 124

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+  A+  +L Y      IVFC T++ V   T  L    +    + G+++Q  R  AL +
Sbjct: 125 DKFEALCRVLDYTQNFYGIVFCRTKSEVDEVTNKLKARNYDAECIHGDITQGLRQKALDL 184

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
            +     + +ATDVAARGID+ +L  VI+  +    E+ +HR GRTGRAG KG+++ FV 
Sbjct: 185 FKKKILTILVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVT 244

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKM 403
           P+   R   ++ R     +  E  P+VE I     + ++    ++D I  +E     + +
Sbjct: 245 PRE-ARTLSQIKRVTKTDIKRETIPNVEEILNAKKEALIA---YIDEIIKEEDYTSYEGL 300

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            D L+   DP+++ +  LR        PE  + +  V  + +  D +R F +  GS+D +
Sbjct: 301 ADKLIEGRDPKQVLSSLLRHFYEDEFLPENYSEIEDV--KVKIDDKTRLF-IALGSKDGY 357

Query: 464 KGSSWFSL 471
                  L
Sbjct: 358 NPGRLLDL 365


>gi|257487412|ref|ZP_05641453.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|320325825|gb|EFW81886.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327257|gb|EFW83271.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879451|gb|EGH13600.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330988315|gb|EGH86418.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 157

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 158 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 213

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 214 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 273

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 274 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 334 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 394 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 442


>gi|229844771|ref|ZP_04464910.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
 gi|229812485|gb|EEP48175.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
          Length = 415

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTREL+VQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYRHPRALILAPTRELSVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|109893656|sp|Q9FFQ1|RH31_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 716

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 31/396 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++      SP 
Sbjct: 261 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVK-----SPP 315

Query: 73  SAP-------LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-N 123
           ++P       LAL I PTRELA Q   E   L      + V V IGG  +  E++ +Q N
Sbjct: 316 TSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTN 375

Query: 124 GAHIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
              I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R
Sbjct: 376 PCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKER 435

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           +  +FSAT+   +  +     ++D   VN   E     H  +    ++ +L    + +  
Sbjct: 436 QTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYT 495

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +LR H   N     IVFC+T         +L E    V  +     Q  R+      R  
Sbjct: 496 LLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKS 555

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + ++     
Sbjct: 556 KGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAP--- 612

Query: 354 RRAERLFREA--NVSVVWEPAPSVEAIRERDAQRIL 387
              E  F  +  ++ +   P PS++    +  Q+ L
Sbjct: 613 --WEEYFLSSLKDLPITKSPLPSIDPETVKKVQKAL 646


>gi|302533878|ref|ZP_07286220.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302442773|gb|EFL14589.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 465

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 6/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   
Sbjct: 58  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLAL--- 114

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R +  +APLA+ + PTRELA QV   L        + +A  +GG+S++R+   L
Sbjct: 115 LARTAGRRAQPTAPLAMVLVPTRELAQQVTDSLSPYATSVNLRIATVVGGMSINRQAGAL 174

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +L     + +
Sbjct: 175 RRGAEVLVATPGRLKDLIDRGDADLSQVSITVLDEADQMTDMGFMPQVTALLKQVAPEGQ 234

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       S +++  VL  + + D   V     
Sbjct: 235 TMLFSATLDKNIDKLVKMFLDDPVAFSVDPSAGAVSTMEHH-VLYVMDETDKKAVATRIA 293

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V R  K L     +   L G  SQ +R+  L   + G     IAT
Sbjct: 294 ARDGRVIMFVDTKRGVDRMVKRLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALIAT 353

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 354 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQKRDMSRLMS 413

Query: 362 EANVS 366
           +A ++
Sbjct: 414 DAGIT 418


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 191/355 (53%), Gaps = 12/355 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I + ++   Y   TS+Q   +   L  +D+L  A+TGSGKT AF + +    LA+   
Sbjct: 124 QSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQ-PT 182

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 PLAL +APTRELA Q+ +E++ +  +      A+ +GG ++  +R +L+ G  +
Sbjct: 183 VRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLELRAGVDV 242

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH++    ++S +  +VLDEAD MLD+GF   I  ++ + P+K + L+FSA
Sbjct: 243 IVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSA 302

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
           T+   I TL + Y    V+V +   +   +++      V+ S++ + ++ +L    ++  
Sbjct: 303 TMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLALLVEDASQAE 362

Query: 247 --------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF   +   +   + L     Q VAL G  SQ +R  AL+  R G   + 
Sbjct: 363 RSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALRDFRSGSTSIL 422

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +  F   Q++
Sbjct: 423 VATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDQDL 477


>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 546

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 193/349 (55%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +++ E G+   T++Q  +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 145 NICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKTACFIIPILQELRQK 204

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   V +    GGV +  +  +L    
Sbjct: 205 RQSF------FALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNLAKKP 258

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+V TPGR+ DH+   KG N+ +LK +V DEAD++L L F   I  +L   P+KR   +
Sbjct: 259 NIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPQKRTTFL 318

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ +++ ++++    S +    + + L  +   + ++  +  +
Sbjct: 319 FSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPLKYKYTYLCSLCFHFSS 378

Query: 245 KNAIVF---CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  I+F   C+T   ++ F + L     + + L G+L+Q +R ++L   +  R  + I+T
Sbjct: 379 RCIIIFANTCATAQKINFFCRNLG---LKSICLHGKLTQNQRLSSLNSFKSKRYNILIST 435

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            V ARG+DL D+++VI+ +L S  E  +HR GRT RAGR G S+  + Q
Sbjct: 436 QVGARGLDLKDIKIVINFDLCSCKE-YIHRVGRTARAGRTGKSITFVTQ 483


>gi|16611843|gb|AAL27386.1|AF426171_17 RhlE [Yersinia pestis]
          Length = 421

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|63255030|gb|AAY36126.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 485

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 102 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 160

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 161 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 216

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 217 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 276

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 277 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 336

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 337 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 397 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 445


>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|12643712|sp|Q07886|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
           Short=DEAD box protein 45A
 gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
          Length = 521

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 192/388 (49%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYHGA 244
               K++ K++    IAS   E  Q SD+      D R +L A  DRD  ++  LR +  
Sbjct: 192 ----KDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSPASAPL 76
           Y   T VQ+  +      +D++  AQTGSGKT AF L   + ++ E     +FS    P 
Sbjct: 327 YEKPTPVQKYSIPIIAAGRDLMACAQTGSGKTAAFLLPTLTCMVKEGLTTSQFSEVQEPQ 386

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           A+ +APTREL VQ+  +       T V   V  GG SV  + R+++ GAH+VVGTPGRL 
Sbjct: 387 AIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVGHQLREVERGAHVVVGTPGRLL 446

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPK-KRRMLMFSATISPA 192
           D I    + +  +K ++LDEAD MLD+GF   I  +++     PK +R+ LMFSAT    
Sbjct: 447 DFIEKGKIGLGKVKFLILDEADRMLDMGFEPCIRKLVEQLGMPPKTQRQTLMFSATFPTE 506

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA ++  D + + +      ++D++     V    +   + +IL   G+   +VF  
Sbjct: 507 IQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQKREKLCSILTESGSDKTLVFVE 566

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +       L++  F   ++ G+  Q+ER  AL+  + G A + IAT VAARG+D+P+
Sbjct: 567 QKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFKRGTAPILIATSVAARGLDIPE 626

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ V++ +L S+ +  +HR GRTGR G  G + 
Sbjct: 627 VKHVVNYDLPSSIDEYVHRIGRTGRCGNLGKAT 659


>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
 gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
          Length = 506

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 195/392 (49%), Gaps = 50/392 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L++ G  + T +Q++ +   L  +D + +A+TGSGKT AF L +   L  E     
Sbjct: 18  LAKQLTKVGLKDATPIQKSCIPAILSGQDCIGAAKTGSGKTFAFALPILEKLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV 
Sbjct: 73  PVSH-FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL DH+ G    +  +LK +V+DEAD ML+  F   +  I  S PK R+ L FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDASLAIIEKSLPKARQNLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSD---------IDYRAVLVALSDRDNAIVNILR 240
                   K++ KD+    IA+E  + S+         +D R +L A  DRD  ++  LR
Sbjct: 192 --------KDFIKDSSIFPIANECFEWSEESQVATVDTLDQRYLLCADYDRDMVLIEALR 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  +N     ++F +T+      +  L     + V L G + Q+ER  A+   +    R
Sbjct: 244 KYRDENPNSNVMIFTNTKKYCQLLSMTLQNLDIENVCLHGFMRQKERVAAISRFKSNHIR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352
             IATDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGR GM  S+F  P+++  
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRSGMSISIFRFPRDLEL 363

Query: 353 ------------------QRRAERLFREANVS 366
                             QR  ER+F + NV+
Sbjct: 364 LGSIEDEINTKLQEHPIDQRMVERIFMQVNVT 395


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score =  189 bits (481), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 75  DMPRELLAALGSQGVAVPFPIQSATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 132 AKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASALRGGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   +DG   V +AT+VA
Sbjct: 310 -RVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 369 ARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMTRLMATAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 190/366 (51%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A           EN R
Sbjct: 242 YTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKENGR 301

Query: 69  FSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL+L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 302 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 361

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +     +VLDEAD MLD+GF   I  I+  D+ P K  R+ +
Sbjct: 362 LVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 421

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 422 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 481

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 482 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 541

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E
Sbjct: 542 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 589

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 590 KNINIT 595


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 184/358 (51%), Gaps = 6/358 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSPASAPL 76
           GY   T +Q   +   L  KDV+  AQTG+GKT AF L L   L   +  +   P +   
Sbjct: 20  GYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLLHRLFEAHQIENPEPNNQVS 79

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELA QV +          +   V  GG S++ +  +++ G  ++V TPGRL 
Sbjct: 80  VLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINPQIDEIRQGVDVLVATPGRLL 139

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           + +    +++S LK +VLDEAD MLD+GF  DI+ IL   P++++ L FSAT   AI  L
Sbjct: 140 ELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRLPQQKQTLFFSATFDDAIFKL 199

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +K   +D V + +   N     ++     V    +   I  ++     +  ++F  T+  
Sbjct: 200 SKTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKEKKSGLISYLIGSKNWQQVLIFTRTKEG 259

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R  K + +   +  A+ G+ SQ  R   L   + G  R  +ATDVAARG+D+  L  V
Sbjct: 260 ADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGELRALVATDVAARGLDIEALSYV 319

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSVVWEP 371
           I+ EL  N E+ +HR GRTGRAG+ G++V ++ +    + +  E+L  +  ++  W P
Sbjct: 320 INHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKENYLLKDIEKLL-DTPLASQWYP 376


>gi|51595558|ref|YP_069749.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           32953]
 gi|108807091|ref|YP_651007.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Antiqua]
 gi|108812974|ref|YP_648741.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Nepal516]
 gi|153950333|ref|YP_001401773.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           31758]
 gi|166211637|ref|ZP_02237672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400295|ref|ZP_02305808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167423922|ref|ZP_02315675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170025120|ref|YP_001721625.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis YPIII]
 gi|186894614|ref|YP_001871726.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis PB1/+]
 gi|229894068|ref|ZP_04509254.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229903411|ref|ZP_04518524.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|294503186|ref|YP_003567248.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
 gi|51588840|emb|CAH20454.1| putative ATP-dependent RNA helicase rhlE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776622|gb|ABG19141.1| DEAD/DEAH box helicase [Yersinia pestis Nepal516]
 gi|108779004|gb|ABG13062.1| DEAD/DEAH box helicase [Yersinia pestis Antiqua]
 gi|152961828|gb|ABS49289.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207408|gb|EDR51888.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167050244|gb|EDR61652.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056771|gb|EDR66534.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751654|gb|ACA69172.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697640|gb|ACC88269.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679181|gb|EEO75284.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229703953|gb|EEO90966.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361223|gb|ACY57944.1| DEAD/DEAH box helicase [Yersinia pestis D106004]
 gi|294353645|gb|ADE63986.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
          Length = 451

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 211/441 (47%), Gaps = 22/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + L+ E
Sbjct: 268 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMRE 327

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 328 GVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIV 387

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 388 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 447

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    V +    +   +V 
Sbjct: 448 QRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVE 507

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 508 ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 567

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 568 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 627

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G+       + A  D  K 
Sbjct: 628 QPL-----VKVLTDAQQDVPAWLEEIAFSTYT-PGFSGSTRGN-------MFASVDTRKN 674

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG    +  TPV
Sbjct: 675 YQGKSTLNTAGFSTSQTPTPV 695


>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 575

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 190/339 (56%), Gaps = 11/339 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G    T +QE  +   L  KDV+  AQTG+GKT+AF L +      +      A
Sbjct: 18  DALQANGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLPILENADPQ------A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +   AL + PTRELA+Q+  E++ L  K   + V    GG  V+++ R L+   H+V+ T
Sbjct: 72  THVQALILTPTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKLKGKIHVVIAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R   +++S +   VLDEAD+ML +GF  ++E I+ ++P +++ L+FSAT+S 
Sbjct: 132 PGRLLDHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDIMANTPFEKQTLLFSATMSE 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LAK + +     NI  + ++ +  D R + V  +DR     + ++L       A++
Sbjct: 192 QVQALAKRFMQKPE--NIKVQGKRITLDDIRQIAVETTDRAKQATLCSLLDEQRPFLAVI 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   S+    L    +    L G+LSQ +R + ++  R+ R +  +ATDVAARG+D
Sbjct: 250 FCRTKRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  V + ++  + ++ +HR GRTGRA  KG +  ++
Sbjct: 310 VEGVTHVFNYDIPEDVDSYIHRIGRTGRAKEKGTAFTLV 348


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L      + A+      
Sbjct: 223 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQ 282

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 283 QKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 342

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    ++++H++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 343 TPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFS 402

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R V   +  D+D+A+++IL      
Sbjct: 403 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALLDILCSDSTG 462

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 463 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 522

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFR 361
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L +
Sbjct: 523 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSLVDLLK 582

Query: 362 EANVSV 367
           +AN  V
Sbjct: 583 DANQEV 588


>gi|161486737|ref|YP_234164.2| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 483

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
          Length = 499

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 193/349 (55%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 99  NICEEILQSIQELGWEKPTLIQQKVLPLMFQKRDIIGLSETGSGKTACFIIPILQELKLK 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   + +    GGV +  +  +L    
Sbjct: 159 KQNF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKKP 212

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++ TPGR+ DH+   KG N+ +LK +V DEAD++L L F   I  +L   PK R   +
Sbjct: 213 NIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPKNRITFL 272

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ +++ ++++      +    + + L  +   + ++  Y+  
Sbjct: 273 FSATMTKSVAKLKKTSLKNPIKIEVSNKYSTVKTLIENYIFLPLKYKYTYLCSLCFYYTN 332

Query: 245 KNAIVF---CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           KN I+F   C+T   ++ F + L     + + L G+L+Q +R ++L + +  +  + I+T
Sbjct: 333 KNIIIFSNTCATAQKLNFFCRNLG---LKSICLHGKLTQNQRLSSLNLFKTNKYNILIST 389

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            V ARG+DL ++++VI+ +L S  E  +HR GRT RAG+ G S+  + Q
Sbjct: 390 QVGARGLDLQNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQ 437


>gi|331015254|gb|EGH95310.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 484

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 188/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ + L+
Sbjct: 161 PPPAERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLE 218

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 219 ARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 278

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++
Sbjct: 279 RQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLV 338

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +
Sbjct: 339 TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLV 398

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 399 ATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 444


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 180/333 (54%), Gaps = 17/333 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +++   +   L E          
Sbjct: 116 GFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSILQKININLKETQ-------- 167

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL +APTRELA Q+ + +  +     + V  C+GG +V  +   LQ G HIVVGTPGR+
Sbjct: 168 -ALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDIHTLQQGVHIVVGTPGRV 226

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I    L    +K  VLDEADEML  GF+D I  +    P+  ++ +FSAT+   +  
Sbjct: 227 GDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPESVQVALFSATMPQEVLE 286

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCS 252
           + + + +D +R+ +  +      I  +   VA+   +   + + ++        AI++C+
Sbjct: 287 VTQKFMRDPIRIMVKRDELTLEGI--KQFFVAIEREEWKFDTLCDLYETLTITQAIIYCN 344

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  
Sbjct: 345 TRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRVLITTDLLARGIDVQQ 404

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LV++ +L  N EN +HR GR+GR GRKG+++
Sbjct: 405 VSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAI 437


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 14/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSP------ 71
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L +   D   P      
Sbjct: 218 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSKSLEKRGPDGDVPRGLGRQ 277

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 278 SKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 337

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    +++SH++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 338 TPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHLRQTLMFS 397

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R +   +  D+D+A+++IL      
Sbjct: 398 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIECDSDKDKDSALLDILCSDSTG 457

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 458 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 517

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S 
Sbjct: 518 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLST 557


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 7/362 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T+VQE  +   L  +D++  AQTG+GKT+AF L +   +   N       +
Sbjct: 37  LAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEKIDPSN------GS 90

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             AL + PTRELA+Q+  E++ L      + V    GG  V ++   LQ    IVV TPG
Sbjct: 91  TQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQTQIVVATPG 150

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+R   + +  +  +VLDEAD+ML +GF +++E I+  +P  R+ ++FSAT+   I
Sbjct: 151 RLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLFSATMPDDI 210

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K + K+   + I         I+  A+      + NA+++ +R      AI+FC T
Sbjct: 211 RKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRPFLAIIFCRT 270

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
               ++    L    F    L G+L+Q +R   ++  R+   +  IATDVAARG+D+  +
Sbjct: 271 IRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAARGLDVEGV 330

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             V + ++  + E+ +HR GRTGRAG+ G++V    +  +   + + +E N+ +  E + 
Sbjct: 331 THVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNIRLPKEEST 390

Query: 374 SV 375
           + 
Sbjct: 391 AT 392


>gi|330962153|gb|EGH62413.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 484

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 159

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 160 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLK 215

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 216 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 275

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 276 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 335

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 336 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 396 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 444


>gi|301386366|ref|ZP_07234784.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060652|ref|ZP_07252193.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           K40]
 gi|302133062|ref|ZP_07259052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 484

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 188/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ + L+
Sbjct: 161 PPPAERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLE 218

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 219 ARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 278

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++
Sbjct: 279 RQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLV 338

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +
Sbjct: 339 TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLV 398

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 399 ATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 444


>gi|238788773|ref|ZP_04632564.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
 gi|238723078|gb|EEQ14727.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
          Length = 451

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L           
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQNQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 171/320 (53%), Gaps = 7/320 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY++ T +Q       L  +D++ SAQTG+GKT AF L L + L +  D         AL
Sbjct: 20  GYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLLTKLKSHGDL-------RAL 72

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV            V V +  GGV    +R  LQ GA ++V TPGRL D 
Sbjct: 73  ILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSMLQKGADVLVATPGRLLDF 132

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +     N+ +++ +VLDE D MLD+GF   +  I+D  PK+R+ L FSAT+ P + T+ K
Sbjct: 133 LEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKERQTLFFSATLPPELETMTK 192

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              KD  +V I +       + +    VA   + + ++ +L      +AI+F ST+    
Sbjct: 193 WLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALLERTKFDSAIIFTSTKIMAD 252

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +    L +    V  L    +Q+ER +AL   + G+  V +ATD+AARG+D+  +  VI+
Sbjct: 253 KVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEVMVATDIAARGLDIAGVSHVIN 312

Query: 319 AELSSNPENLLHRSGRTGRA 338
            ++  +PE+ +HR GRTGRA
Sbjct: 313 YDVPQHPEDYVHRIGRTGRA 332


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L     +       +PAS     
Sbjct: 41  GFDKPSAVQQRAIKPILDGRDVIIQSQSGTGKTCVFCLGALQIV-------NPASKQTQV 93

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q  +    L     V V  CIGG  V  + + L++G HIV GTPGR+  
Sbjct: 94  LLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDIKALESGVHIVSGTPGRVNH 153

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  + LN  ++K ++LDEADEML+ GF+D +  I    P   ++++ SAT+   +  + 
Sbjct: 154 MIAERHLNTRNIKQMILDEADEMLNRGFKDQVYSIYRYLPPTLQVILVSATLPQEVVEIT 213

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
           + +  +  RV +  +      I  +   VA+       + + ++        A+VFC+TR
Sbjct: 214 EKFMNNPFRVLVKRDELTLDGI--KQFFVAVEKEQWKFDTLCDLYESLIITQAVVFCNTR 271

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    K + +  F V  + GE+SQ+ER++ +Q  R G +RV I+TD+  RG+D+  + 
Sbjct: 272 EKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRVLISTDIWGRGLDVQQVS 331

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LV++ +L ++ EN +HR GR+GR GRKG+++
Sbjct: 332 LVVNYDLPNSRENYIHRIGRSGRYGRKGVAI 362


>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
          Length = 436

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 193/355 (54%), Gaps = 11/355 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+ ++GY   +S+Q+  +   L  +DV+ +AQTG+GKT  F L +   L     R  
Sbjct: 24  IVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLERL-----RHG 78

Query: 71  PAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P +      +L + PTRELA QV   ++       +   V  GGV ++ +   LQ GA +
Sbjct: 79  PHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKINPQITRLQAGADM 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D ++   +++  ++ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSA
Sbjct: 139 LVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILRLLPAKRQNLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T   +I  LA     + V++ +  ENR  + +++      ++ + + + +++  +  +  
Sbjct: 199 TFETSIRRLATGLLHEPVQLQVTPENRTAATVEHILHPCDMARKPDLLCHLIASNDWQQV 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R    L+       A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 259 LVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           ID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++      + R  ERL
Sbjct: 319 IDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEHELLRAIERL 373


>gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 504

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 187/349 (53%), Gaps = 14/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E+G  +  ++QE  L   L  +DV+  A+TG GKT AFG+ L   + ++     
Sbjct: 21  IVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGKTFAFGVPLLQRITSDTAARP 80

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
               P AL + PTREL +QV  +L    ++L A+    + V    GG +   +   L+ G
Sbjct: 81  LTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEETRRLSVVSIYGGRAYEPQVEALRAG 140

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P +R+ ++
Sbjct: 141 ADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAERQSML 200

Query: 185 FSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           FSAT+   I TLA+ +  Q   +R         H   +   YRA  +   D+   +  IL
Sbjct: 201 FSATMPDPIITLARTFMVQPTHIRAEAPHSLAVHDTTEQFVYRAHAL---DKVELVSRIL 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G   V +
Sbjct: 258 QARDRGATMIFTRTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALKAFRGGDVNVLV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 318 ATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 366


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/361 (35%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 75  DMPRELLAALGSQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 132 AKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASALRGGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   +DG   V +AT+VA
Sbjct: 310 -RVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 369 ARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMTRLMATAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|330950967|gb|EGH51227.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae Cit 7]
          Length = 483

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|302188406|ref|ZP_07265079.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           642]
          Length = 483

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|215741236|dbj|BAG97731.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 478

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 183/325 (56%), Gaps = 23/325 (7%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLA---------ENDRFSPASA-PLALAIAPTRELAVQV 90
           +  AQTGSGKT AF L + S L+A         E   F+ A+A P AL +APTRELA Q+
Sbjct: 1   MACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQI 60

Query: 91  GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
             E +    +TG+ V V  GG  ++ + RDL+ GA I+V TPGRL D +    +++  +K
Sbjct: 61  NEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIK 120

Query: 151 AVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTLAKNYQKDAVR 206
            +V+DEAD MLD+GF   I  I++  + P+K  R+ ++FSAT  P I  LA ++  + + 
Sbjct: 121 YLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIF 180

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNA-------IVFCSTRASV 257
           + +         I  +  L++  ++   ++++L+    G  N+       +VF  T+   
Sbjct: 181 ITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREA 240

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L    F   A+ G+ +QQER +AL+  + G   + +ATDVA+RG+D+P++  VI
Sbjct: 241 DSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVI 300

Query: 318 HAELSSNPENLLHRSGRTGRAGRKG 342
           + +L  + E+ +HR GRTGRAG+ G
Sbjct: 301 NYDLPKSIEDYVHRIGRTGRAGKAG 325


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 180 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENG 238

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG    ++ RDL+ G H
Sbjct: 239 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCH 298

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 299 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 358

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 359 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 418

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L +  +   ++ G+ SQ++R  AL   R GR  + +AT
Sbjct: 419 GKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVAT 478

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 479 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 522


>gi|15242854|ref|NP_201168.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|10177044|dbj|BAB10456.1| RNA helicase [Arabidopsis thaliana]
          Length = 522

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/396 (33%), Positives = 197/396 (49%), Gaps = 31/396 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++      SP 
Sbjct: 67  KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVK-----SPP 121

Query: 73  SAP-------LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-N 123
           ++P       LAL I PTRELA Q   E   L      + V V IGG  +  E++ +Q N
Sbjct: 122 TSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTN 181

Query: 124 GAHIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
              I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R
Sbjct: 182 PCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKER 241

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           +  +FSAT+   +  +     ++D   VN   E     H  +    ++ +L    + +  
Sbjct: 242 QTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYT 301

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +LR H   N     IVFC+T         +L E    V  +     Q  R+      R  
Sbjct: 302 LLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKS 361

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + ++     
Sbjct: 362 KGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAP--- 418

Query: 354 RRAERLFREA--NVSVVWEPAPSVEAIRERDAQRIL 387
              E  F  +  ++ +   P PS++    +  Q+ L
Sbjct: 419 --WEEYFLSSLKDLPITKSPLPSIDPETVKKVQKAL 452


>gi|311897562|dbj|BAJ29970.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 765

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 189/354 (53%), Gaps = 4/354 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++RG      +Q A +   L  KDVL   +TGSGKT++FGL L  T LA+ +R + A 
Sbjct: 78  ALAKRGVTTPFPIQAATIPDALAGKDVLGRGRTGSGKTLSFGLPLL-TRLADGER-TKAK 135

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV   LE   +  G+ + V  GG S+  +   L+ G  ++V TPG
Sbjct: 136 HPRGLILVPTRELAMQVADALEPFGSVLGLRLKVVCGGTSMSNQIYALERGVDVLVATPG 195

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P   + L+FSAT+   I
Sbjct: 196 RLRDLINRGSAKMDEVEIAVLDEADQMADMGFLPEVTEILDLVPAGGQRLLFSATLENEI 255

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TL K Y K+ V   +       + + +  ++V   D+      I    G    I+F  T
Sbjct: 256 DTLVKRYLKNPVTHEVDPSAGAVTTMTHHILVVKPKDKAPITSAIAARKG--RTIIFVRT 313

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L E   +  AL G ++Q  R+  L   +DG   V +ATDVAARGI +  +
Sbjct: 314 QMGADRVAQQLVESGVKADALHGGMTQGARTRVLGDFKDGYLNVVVATDVAARGIHVDGI 373

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +LV++ + + + ++ LHRSGRT RAGR G  V ++  + +R   RL  +A V  
Sbjct: 374 DLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVTLVLPHQRRGVFRLMEDAGVDA 427


>gi|46111511|ref|XP_382813.1| hypothetical protein FG02637.1 [Gibberella zeae PH-1]
 gi|91206544|sp|Q4IJH1|DBP3_GIBZE RecName: Full=ATP-dependent RNA helicase DBP3
          Length = 581

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 187/343 (54%), Gaps = 22/343 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q A     L  +DV+  A+TGSGKT+AF L     + A   + + A     + 
Sbjct: 181 YKAPTPIQSASWPFTLSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHTKA-----VV 235

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q   ++  + A   +      GG S   +R  L  GA I+V TPGRL D +
Sbjct: 236 VSPTRELAMQTYEQMASVAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFM 295

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLA 197
               +++SH    VLDEAD MLD GF +DI+ IL S P  +KR+ LMF+AT   ++ TLA
Sbjct: 296 SDGTVDLSHSAFAVLDEADRMLDKGFEEDIKMILSSCPPREKRQTLMFTATWPQSVQTLA 355

Query: 198 KNYQKDAVRVNIAS----------ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAK 245
             +    V++ I S          E + ++ I     ++    ++  ++ +L+ H  G+K
Sbjct: 356 ATFMVSPVKIAIGSGGKETAGGAVELQANARISQSVEVLEPRGKEFRLLEVLKEHQQGSK 415

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VFC  +   +R    L+    +V  + G+L Q++R+ +L+  + G+  V +ATD
Sbjct: 416 KNDRILVFCLYKKEATRIENFLSRKGIRVGGIHGDLRQEQRTRSLEAFKSGQTPVLVATD 475

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++
Sbjct: 476 VAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAI 518


>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 434

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 195/345 (56%), Gaps = 18/345 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72
            L E G    T +QE  +   +  KDV+  A+TG+GKT+AF L +   +        P A
Sbjct: 19  TLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPILENI-------DPNA 71

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           S   AL +APTRELA+Q+  E++  L  K  + V    GG  V ++ + L+   HIVV T
Sbjct: 72  SDIQALIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQQMKKLKGNTHIVVAT 131

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+R + + +S++  VVLDEAD+ML  GF  DIE IL+ +P+ ++ ++FSAT+  
Sbjct: 132 PGRLLDHLRRETIVLSNVSMVVLDEADQMLHFGFLYDIEHILEETPENKQTMLFSATMPK 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----A 247
            I  LAK Y K+   + I S      +I  R +       D A  + LRY   ++    A
Sbjct: 192 DIKKLAKRYMKEPQVIQIQSAEVTVENIKQRVI----ETTDRAKQDALRYVMERDQPFLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC T+  V++    L  + +    L G+LSQ +R   ++  R+ + +  IATDVAARG
Sbjct: 248 VIFCRTKRRVTKLFTALKGYGYNCDELHGDLSQAKRERVMKNFREAKIQYLIATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  +  V + ++  + E+ +HR GRTGRAG  G+++ FV P++
Sbjct: 308 LDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGTGLAITFVAPKD 352


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 31/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S + A           EN 
Sbjct: 236 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDALRAMKENG 294

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 295 RYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCH 354

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 355 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 414

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 415 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 474

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 475 GKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 534

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 535 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 582

Query: 362 EANVSVV 368
           E N+++ 
Sbjct: 583 ERNINIT 589


>gi|289678220|ref|ZP_06499110.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           FF5]
 gi|330975704|gb|EGH75770.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 483

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 158

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 159 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 214

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 215 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 274

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 275 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 334

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 335 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 394

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 395 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 443


>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 449

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 181/328 (55%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +N  FS A  P  + +APT
Sbjct: 31  TEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KNKAFS-AKDPRGVILAPT 88

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  EL  +         + +GG + + + + L+     +V TPGRL DH+  + 
Sbjct: 89  RELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRRYPKFIVATPGRLADHLDHRS 148

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201
           L +  L+ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A +  +A    
Sbjct: 149 LYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNEIAFEML 208

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
               R+ I   N +H DI  +  L    D   AI+  IL     K  I+F +TR    R 
Sbjct: 209 DAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEEAEYKQLIIFTATRVDTERL 268

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T  L E   + +ALSG L+Q +R+  +        ++ + TDVA+RG+D+ ++  V++ +
Sbjct: 269 TDKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVVNFD 328

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG KG +V ++
Sbjct: 329 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 356


>gi|198475917|ref|XP_001357204.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
 gi|198137464|gb|EAL34273.2| GA21521 [Drosophila pseudoobscura pseudoobscura]
          Length = 404

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 50  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TAVRECQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 104 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   H+K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 164 INRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 224 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 344 NYDLPSNRENYIH 356


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +   +       +      AL
Sbjct: 53  GFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIV------DTAVREVQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     V V  CIGG S+  + R L+NG H+V GTPGR+CD 
Sbjct: 107 ILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDEADEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 167 IKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  + VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 227 KFMTEPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 284

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ QQER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 285 KVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGATRVLITTDVWARGLDVQQVSL 344

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|213967088|ref|ZP_03395237.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
 gi|213927930|gb|EEB61476.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
          Length = 486

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 188/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 103 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 162

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R+     P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ + L+
Sbjct: 163 PPPAERY--MGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLE 220

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K  
Sbjct: 221 ARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGE 280

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++
Sbjct: 281 RQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLV 340

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +
Sbjct: 341 TDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLV 400

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 401 ATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 446


>gi|162533080|ref|NP_791083.3| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32363284|sp|Q887N8|RHLB_PSESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28851702|gb|AAO54778.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 397

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 14  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 72

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 73  ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 128

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 129 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 188

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + 
Sbjct: 189 KGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 249 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 309 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 357


>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 432

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 185/349 (53%), Gaps = 9/349 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +  
Sbjct: 15  QALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRV------HTDV 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L IAPTREL  Q+  E + + A   V +   IGG ++  + + L     +++GTP
Sbjct: 69  HQEQVLIIAPTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQLQQLGRRPQVILGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   
Sbjct: 129 GRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIESLISQTDANRQLLLFSATIPDK 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK Y    V V    ++     ID R  ++   ++   ++ ++       AIVFC+
Sbjct: 189 IRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEKTERLIKMIEEDNPFLAIVFCN 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  
Sbjct: 249 KREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
           +  V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 309 ITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357


>gi|50302639|ref|XP_451255.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660701|sp|Q6CXT4|IF4A_KLULA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49640386|emb|CAH02843.1| KLLA0A05731p [Kluyveromyces lactis]
          Length = 396

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  +++Q+  + P +  KDVL  AQ+G+GKT  F +A      A  +      AP  L
Sbjct: 41  GFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIA------ALQNIDEKIKAPQGL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     V V  CIGG S+  +   L+ GA I+VGTPGR+ D 
Sbjct: 95  ILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +     ++K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 155 IDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTS 214

Query: 199 NYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + KD VR+ +  +      I  Y   +     + + + ++        A++FC+TR  V
Sbjct: 215 KFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L E+ F V A+  +L QQER   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 275 EELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 334

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 335 NYDLPSNKENYIH 347


>gi|45440809|ref|NP_992348.1| ATP-dependent RNA helicase RhlE [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45435667|gb|AAS61225.1| Superfamily II DNA and RNA helicases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 470

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 34  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 93

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 94  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 153

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 154 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 213

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 214 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 273

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 274 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 333

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 334 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 393

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 394 GYEPDPSIKA 403


>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835 [Chlorella variabilis]
          Length = 608

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 191/355 (53%), Gaps = 16/355 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSP 71
           L  +G   L  +Q   L P L  +D++  A+TG GKT+AF L +   L        + + 
Sbjct: 18  LRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIVERLAGGQGAGGKRAF 77

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
             AP  + +APTRELA QV  + E+ YAK   +  VC+ GG     +   L+ G  +V+G
Sbjct: 78  GRAPSVVVLAPTRELAKQVAADFEY-YAKAFSLTTVCLYGGTQYGPQEGMLRRGVDVVIG 136

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSAT 188
           TPGR+ DH+    L ++ L+  VLDE DEML++GF +D+E IL++       + L+FSAT
Sbjct: 137 TPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAGVDAATVQTLLFSAT 196

Query: 189 ISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHG-A 244
           +   +  + K + K     V++    +  +    R +L+    S R   + ++++ +G  
Sbjct: 197 LPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWSQRSQIVPDLVKCYGVC 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+   +  +  LAE  F   AL G++ Q +R   L   R G+  V +ATDVA
Sbjct: 257 GRTIIFTETKNDANELSGTLAES-FGARALHGDIPQGQREVTLAGFRSGKFSVLVATDVA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+  +ELVI  E   +PE  +HRSGRTGRAG+ G+ + ++     RR E L
Sbjct: 316 ARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLV----DRRKEGL 366


>gi|308235047|ref|ZP_07665784.1| DEAD/DEAH box helicase [Gardnerella vaginalis ATCC 14018]
 gi|311114306|ref|YP_003985527.1| exopolyphosphatase [Gardnerella vaginalis ATCC 14019]
 gi|310945800|gb|ADP38504.1| exopolyphosphatase [Gardnerella vaginalis ATCC 14019]
          Length = 613

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/382 (32%), Positives = 188/382 (49%), Gaps = 23/382 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P+ +   L   G      +Q+A L   L+  ++L   +TGSGKT+AF + L + L    
Sbjct: 171 VPEPLVNVLRADGKNTAFPIQQATLPDSLQGANILGRGRTGSGKTLAFSIPLVARLAENF 230

Query: 65  -------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
                        +N   S   AP A+ +APTREL  Q+   +  L A  G+      GG
Sbjct: 231 VDLINSGRTSRKNKNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGG 290

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           V   R+   L+ GA I+V  PGRL D ++   L + +++  VLDEADEM D+GF   +  
Sbjct: 291 VRYQRQIAPLKQGAQIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMADMGFLPAVTR 350

Query: 172 ILD-SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           +L+ ++P  +RML FSAT+   +  +   +  +AV   +   + Q   + +    V+  D
Sbjct: 351 LLEQTNPNGQRML-FSATLDKQVAAIVNRFLPNAVVHAVDDADSQVDTMTHHVFGVSAGD 409

Query: 231 RDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +      +LR    G K +I F  T+       K         V L G LSQ +R   L 
Sbjct: 410 K----YEVLRKLASGKKRSIFFTRTKYQAKNMAKKFISQGIPAVDLQGNLSQNQRDRHLA 465

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  DG  RV +ATDVAARGID+ D+ LV+  E   +P++ LHRSGRT RAG  G  V ++
Sbjct: 466 VFSDGLVRVLVATDVAARGIDISDVALVVQTEPPEDPKSFLHRSGRTARAGESGDVVTLV 525

Query: 349 PQNMQRRAERLFREANVSVVWE 370
             N +R A  + R A +    E
Sbjct: 526 LPNQKRMANTMLRRAGIHAKAE 547


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 184/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ +   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 194 VNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 254 ATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 350


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  + + A+
Sbjct: 15  SLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLLQLLAMEGPKVT-AN 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 74  SVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMKLRGGVDLLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L  + L+ +VLDEAD MLDLGF +++  I  + PKKR+ L+FSAT S  I
Sbjct: 134 RLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKRQTLLFSATFSDDI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D   + ++  N   + +    V V    +    V+++R +  K  +VF  T
Sbjct: 194 RLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWKQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIEDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            LV++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLV 348


>gi|78046026|ref|YP_362201.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034456|emb|CAJ22101.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 453

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 188/351 (53%), Gaps = 11/351 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V   AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L    L      
Sbjct: 38  VFESALARAGVHALTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLLQRLQ----- 92

Query: 70  SPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           +P  AP  L    + PTREL  QV + L  L A     + +    GG +++ +   L+ G
Sbjct: 93  APEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 152

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S +  +VLDEAD +LDLGF  +++ IL   P +R+ ++
Sbjct: 153 ADIVIATPGRLLDLVTHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT   AI +LAK   +D +R+   +   Q   I  RA+ V    R   + ++L  HG 
Sbjct: 213 VSATFPAAIASLAKRRLRDPLRITHDAMPEQAPSITQRAIAVDAGQRTQLLRHLLLEHGW 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R    +  + L++     + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 273 PQLLVFVASRHGADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 332

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            RGID+  L  V++ +L  +  +  HR GRT RAG  G+++ FV   + Q+
Sbjct: 333 GRGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQ 383


>gi|183601427|ref|ZP_02962797.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|241191073|ref|YP_002968467.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196479|ref|YP_002970034.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219033|gb|EDT89674.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|240249465|gb|ACS46405.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251033|gb|ACS47972.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794062|gb|ADG33597.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 645

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 201/403 (49%), Gaps = 36/403 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P ++   L+  G      +Q+  L   L  +DVL   QTGSGKT+AFGL L S L    
Sbjct: 20  VPGLLVRLLAADGKKTAFPIQQDTLPDSLAGRDVLGRGQTGSGKTLAFGLPLVSRLSSMD 79

Query: 63  ---------------LAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTG 102
                          L ++ RF    +     P  L +APTRELA Q+   L  L    G
Sbjct: 80  RADDQDFPRDMDSQTLRKSLRFKRGVSKYMPHPRGLVLAPTRELANQISDVLTPLADAYG 139

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           + V    GGV   R+ R L  GA IVV  PGRL D I  + L ++ ++ VVLDEADEM D
Sbjct: 140 MAVTTVYGGVKYERQFRALDAGADIVVACPGRLEDLIEQQALTLADVRIVVLDEADEMAD 199

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-- 220
           +GF   I+ IL    +  + ++FSAT+   +  +   +  D     + S +   S++D  
Sbjct: 200 MGFLPPIKRILKQIRQDAQHMLFSATLDHGVDEVVSEFLHDP---KVHSVDEVTSNVDSM 256

Query: 221 -YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            +   LV+ +D+  A+V  L   G    I+F  T+    +    L +       L G LS
Sbjct: 257 THHLFLVSRNDK-AAVVREL-ASGRGRRILFTRTKFQAKKLAHTLTQSGIPAAELHGNLS 314

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R   LQ+   G+  V +ATDVAARGID+ ++ LV+  E   +P++  HRSGRT RAG
Sbjct: 315 QHQRDRNLQVFESGQVNVLVATDVAARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAG 374

Query: 340 RKGMSVFVIPQNMQRRAERLFREANVSV----VWEPAPSVEAI 378
           + G  V ++  + +R+   LF+E ++ +    V   +P V+ +
Sbjct: 375 QSGDVVTLMTPDQKRKIRHLFKEVDIKLKPVEVTPESPQVQEL 417


>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha153]
          Length = 399

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 178/337 (52%), Gaps = 7/337 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQN 123
           +++  P   P AL + PTRELA QV +     YAK          +GG S   + R L  
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKN-ALAYAKNMRWFRTVSIVGGASFGYQTRALSK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L
Sbjct: 126 PVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR   
Sbjct: 186 LFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDAD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDV
Sbjct: 246 IDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSG--RTGRA 338
           AARGID+P +  VI+ +L    E+ +HR G  R+GR 
Sbjct: 306 AARGIDVPTITHVINYDLPKQAEDYVHRIGPYRSGRT 342


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 201/367 (54%), Gaps = 14/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEN 66
           PQV+      +G+   + +Q       L  +D +  A TGSGKT+AFG+ AL        
Sbjct: 103 PQVLDCC---KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMG 159

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ +    P  L ++PTRELA Q+   L    A  G+      GG S   +   L++G  
Sbjct: 160 EKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVD 219

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+M+MFS
Sbjct: 220 IVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQMVMFS 279

Query: 187 ATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYH 242
           AT  PA+  LA+ +   + ++V I SE+   ++ D   ++  L D  RD+ +V +L +YH
Sbjct: 280 ATWPPAVHQLAQEFMDPNPIKVVIGSEDLA-ANHDVMQIVEVLDDRSRDSRLVALLDKYH 338

Query: 243 GAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            A+    +VF   +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IA
Sbjct: 339 KAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++  F   +N     E  
Sbjct: 399 TDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELV 458

Query: 358 RLFREAN 364
            + REA 
Sbjct: 459 NVLREAG 465


>gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 187/346 (54%), Gaps = 9/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRF 69
           +++ E G+  LT +Q  IL   L  +D +  AQTG+GKT  F + +   LL      D  
Sbjct: 18  KSVKELGFTRLTPIQAKILPHTLAGQDAIGQAQTGTGKTATFLITIIEALLKRPFAADEM 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIV 128
                P A+ +APTRELA Q+  +   L   T +     +GGV   ++   L +    I+
Sbjct: 78  RYLGEPRAVILAPTRELANQIFEDAIGLTQHTDLHSVCIMGGVDYEKQTAALDHAFTDIL 137

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186
           + TPGRL D I    + +  ++A VLDEAD MLD+GF  DI+ ++   P    R+ L+FS
Sbjct: 138 IATPGRLIDLIHKGHVFLDRVEAFVLDEADRMLDMGFIPDIKRLMRYMPANTDRQSLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  +  LA  +  + V V I  E++    ++    L+  SD+  A+  IL       
Sbjct: 198 ATFNQDVMNLAYQWLSNPVFVEIKPEHKTSDLVEQHFYLLTESDKFKALNRILMAEDTHK 257

Query: 247 AIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            IVF + +  V R + ++ AEH   VV LSG++ Q +R   L   ++G A+V +ATDVA 
Sbjct: 258 VIVFANRKDQVKRLYNRLSAEH--NVVMLSGDVDQSKRERYLDNFKNGDAKVLVATDVAG 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RGI + D+  V++  L   P++ +HR GRTGRAG++G+S+  + ++
Sbjct: 316 RGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQQGVSISFVSED 361


>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 431

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 191/352 (54%), Gaps = 9/352 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G+   T++Q   +   L  +DVL  AQTG+GKT AF + +   L       +P   
Sbjct: 22  LTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLERLSG-----TPKGQ 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA+Q+   ++ L     +     +GG  +  + R L+    I+V TPGR
Sbjct: 77  PRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLRQRPDIIVATPGR 136

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+    +++  +  +VLDEAD MLD+GF   I  ILD+ P++R+ L+FSAT+   + 
Sbjct: 137 LLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQTLLFSATMPNDLA 196

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA+   KD VRV + +++   +D   +AV     DR N ++  L    +   +VF  T+
Sbjct: 197 RLAQASVKDPVRVMV-TKSATTADGVTQAVHHTTHDRKNGLLMSLLQSESDTVLVFARTK 255

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R   +L     +V  L G  +  +R  AL+  R G  RV +ATD+AARGID+ ++ 
Sbjct: 256 HRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLVATDIAARGIDVANIA 315

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAERLFREA 363
            VI+ ++ + PE+ +HR GRT R    G  + FV  ++ +  R  ERL  +A
Sbjct: 316 HVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRAIERLLGQA 367


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L      + A+      
Sbjct: 223 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQ 282

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 283 QKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 342

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    ++++H++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 343 TPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFS 402

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R V   +  D+D+A+++IL      
Sbjct: 403 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALLDILCSDSTG 462

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 463 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 522

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFR 361
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L +
Sbjct: 523 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSLVDLLK 582

Query: 362 EANVSV 367
           +AN  V
Sbjct: 583 DANQEV 588


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 192/366 (52%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S  L      + A+      
Sbjct: 223 YTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQ 282

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTREL  Q+  E      +T +   V  GG  +  + R L  G +++V 
Sbjct: 283 QKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 342

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           TPGRL D +    ++++H++ +VLDEAD MLD+GF   I  I+  S  P K  R+ LMFS
Sbjct: 343 TPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFS 402

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAK 245
           AT  P I  LA+ + KD + +++        +I  R V   +  D+D+A+++IL      
Sbjct: 403 ATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVECESDKDKDSALLDILCSDSTG 462

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      +  L +H     A+ G+ +Q+ER  AL++ R GR  + +AT VAA
Sbjct: 463 LTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERERALELFRTGRCPILVATAVAA 522

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----LFR 361
           RG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S     ++   +  R    L +
Sbjct: 523 RGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFSRSKNFKIARSLVDLLK 582

Query: 362 EANVSV 367
           +AN  V
Sbjct: 583 DANQEV 588


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 198/405 (48%), Gaps = 17/405 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +Q   + P L  KDV+  A TG+GKT A+ L L        +RFS  
Sbjct: 16  DALGRARFTQPTPIQARAIPPALAGKDVVGCAATGTGKTAAYVLPLV-------ERFSGR 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L L +APTREL  Q+   +       G+   V +GG  +  +   L+     ++ TP
Sbjct: 69  KGLLGLVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGEDMAAQVEALKERPTFLLATP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  + +    L+A+VLDEAD MLD+GF+  IE IL + P++R+ L+FSAT+ P 
Sbjct: 129 GRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQIETILKALPRRRQTLLFSATLGPD 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +T  A++     VRV +          + R   V   ++   ++ ++R +    A++F  
Sbjct: 189 VTRFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAEEKSALLLTLMRKNEG-TALIFTR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K L    +    L  + +Q +R  AL   R G  R  +ATD+AARG+D+ D
Sbjct: 248 TKERADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVATDIAARGLDVED 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQR--RAERLFREANVSVVW 369
           +  VI+ +L   PE+ +HR GRT RA   G+ + F  P++     R E + R     V  
Sbjct: 308 VGHVINYDLPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIESIMR---TKVPR 364

Query: 370 EPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKH 411
            P P  + + + + QR L   +DP       G  K+  D    +H
Sbjct: 365 LPVPREDPVFQEEWQRHLAAQKDPGPPQKDHGVSKRTPDQAPGRH 409


>gi|15805364|ref|NP_294058.1| ATP-dependent RNA helicase [Deinococcus radiodurans R1]
 gi|6458012|gb|AAF09917.1|AE001894_1 ATP-dependent RNA helicase, putative [Deinococcus radiodurans R1]
          Length = 478

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 201/368 (54%), Gaps = 39/368 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T VQ   +   L  +DV+ +A+TGSGKT+AF +  A+  +    +     AP  L
Sbjct: 46  GEREPTPVQAKAIPELLAGRDVIATARTGSGKTLAFLIPAAARGIGVTGKTR-GMAPEVL 104

Query: 79  AIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            ++PTRELAVQ   V REL       G+      GG++     R+  N   +V GTPGRL
Sbjct: 105 IVSPTRELAVQIRDVAREL-------GMTAGRITGGITPAATTREASNKG-VVSGTPGRL 156

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-----MLMFSATI 189
            D I GKG L+++H++ VVLDEADE+L LGF  D+E+I++ +  + R     + + SAT 
Sbjct: 157 KDLI-GKGELSLAHVRYVVLDEADELLSLGFLKDVEWIVNQARAQARGGEIQVALASATF 215

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-------RDNAIVNILRYH 242
              +  +A    ++ VR++I       +       +VA  +       RD     +L + 
Sbjct: 216 PEEVRGVAARVLRNPVRIDIEPPRTAEAAPLKAGEVVAAGEGRAEHVARDTTRDEVLEHA 275

Query: 243 GAK----------NAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMM 290
            A+            +VFC T+A   R  + L + L   +VV L G + Q++R   +  +
Sbjct: 276 AAEIREALREPGGCVVVFCRTKALTKRRAEKLGQLLPHEEVVPLEGNMDQRKRERVMDKL 335

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           RDG ARV +ATD+A RGIDLP++ LVIHA++++  E+ +HRSGRT RAGR G + VF+IP
Sbjct: 336 RDGTARVLVATDIAGRGIDLPEVRLVIHADVATTSEDHVHRSGRTARAGRGGRNLVFIIP 395

Query: 350 QNMQRRAE 357
           +  QR A+
Sbjct: 396 EQRQRWAQ 403


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 177/335 (52%), Gaps = 7/335 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   D +  AQ+G+GKT  F +A    +      +   S  + L
Sbjct: 47  GFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQII-----NYDVMSCQI-L 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 101 ILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAGVHMVVGTPGRVYDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  +LDEADEML  GF+  I+ +    P   ++ +FSAT+   I  L  
Sbjct: 161 IEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVALFSATMPNEILELTT 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + +   R+ +  +      I    +L+    +   + ++        AI++C+TR  V 
Sbjct: 221 KFMRSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQAIIYCNTRRKVD 280

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T  + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LVI+
Sbjct: 281 YLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 340

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            +L  +P+N +HR GR+GR GRKG+++ FV  Q+M
Sbjct: 341 YDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDM 375


>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
 gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
          Length = 456

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A         
Sbjct: 15  AVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQKLSATATPIRGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 75  PVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMVKLRGGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+    +   + +A  N     +  +   V    +   +  ++     +  +VF  T
Sbjct: 195 KGLAEKLLTNPEMIEVARRNTASEQVAQQVHFVDKKRKRELLSQLIGEGNWQQVLVFTRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 255 KHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARGLDIEEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNMQRRAERLFREANVSVV-- 368
             V++ EL +  E+ +HR GRTGRA   G++   V V    + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKREIPRLAIE 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 509

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 182/354 (51%), Gaps = 4/354 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  YV  T +Q   +   +  +DV+  AQTG+GKT +F L +   LL    R  
Sbjct: 13  ISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILHRLLENRVRPQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +    L ++PTREL+ Q+            +  A+ IGGV + R+ R +  G  ++V 
Sbjct: 73  PKTC-RVLVLSPTRELSGQILDSFNAYGRHLRLSAALAIGGVPMGRQVRAMMQGVEVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++G  + ++ ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT+ 
Sbjct: 132 TPGRLLDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPVKRQTLFFSATMP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA++  +D  RV +   +     I  R + +  S +   +  +L+      A+VF
Sbjct: 192 KDIAELAEHMLRDPARVAVTPVSSTAERITQRIIQLDHSAKPATLSELLKSEPVNRALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L +      A+ G  SQ  R   L   R+G  R  +ATD+AARGID+
Sbjct: 252 TRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLASFRNGDIRTLVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
             +  V + +L + PE  +HR GRT RAG  G ++ ++        R  ERL R
Sbjct: 312 DGITHVFNFDLPNIPETYVHRIGRTARAGADGTAISLVAGEENTYLRDIERLIR 365


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 188/348 (54%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   + + + + GYV LT +Q+  +   +  +D++  AQTGSGKT AF L + + L+  
Sbjct: 304 NLCDTLAKNVCKAGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMMK 363

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             ++  F     P A+ +APTREL  Q+  +       T V   V  GG       + + 
Sbjct: 364 GVQSSAFQALKEPEAIIVAPTRELINQIYLDARKFAYGTCVRPVVIYGGTQTFHSLKQIS 423

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GFR+DIE +L S    S +
Sbjct: 424 EGCNILCATPGRLLDIIRKEKIGLTKLRFLVLDEADRMLDMGFREDIENLLRSPGMPSKE 483

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT   +I +LAK   K D + V +       SD+    + V    + + ++ 
Sbjct: 484 ERQTLMFSATFPSSIQSLAKXMLKPDYLFVVVGQVGGACSDVQQEVIEVEEFGKKDKLME 543

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G++  +VF  T+         L +      ++ G+  Q+ER  AL+  R G+  V
Sbjct: 544 ILQVIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQRERETALRDFRTGQCPV 603

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ ++  VI+ ++  + +  +HR GRTGR G  G ++
Sbjct: 604 IVATSVAARGLDIENVSHVINFDIPDDIDEYVHRIGRTGRCGNTGRAI 651


>gi|282863822|ref|ZP_06272880.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561523|gb|EFB67067.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 496

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 194/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 60  DLPAPLLATLGAEGVTEPFPIQAATLPNALVGRDVLGRGRTGSGKTLAFGLAL---LART 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PLAL + PTRELA QV   L        +  A  +GG+S+ R+   L+ GA
Sbjct: 117 AGRRADARRPLALVLVPTRELAQQVTDALAPYARSLKLRTATVVGGMSIGRQASALRAGA 176

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLM 184
            +VV TPGRL D +      +  +   VLDEAD+M DLGF   +  +LD   P  +RML 
Sbjct: 177 DVVVATPGRLADLVGRGDCRLDRVAVTVLDEADQMADLGFLPQVTELLDLVRPDGQRML- 235

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 236 FSATLDREVDQLVRRYLHDPVVHSVDPAAGTVTTMEHHVLHVQGADKYATTTEIAARDG- 294

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T  L     +  AL G  SQ +R+  L   R G   V +AT+VA
Sbjct: 295 -RVIMFLDTKHAVDRLTAHLRGSGVRAAALHGGKSQPQRTRTLDRFRTGDLTVLVATNVA 353

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++P++ LHR+GRT RAG  G  V ++  + +R   RL  EA 
Sbjct: 354 ARGIHVDDLDLVVNVDPPTDPKDYLHRAGRTARAGESGKVVTLVLPDQRRELTRLMTEAG 413

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           V       P V  +R  +A+
Sbjct: 414 VR------PQVTQVRSGEAE 427


>gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 430

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 180/340 (52%), Gaps = 5/340 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY  LT VQ  ++   L   D++  A+TG+GKT +F L L   LL E D  SP 
Sbjct: 14  QAIDECGYQQLTQVQSEVIPLALSGVDLMACAETGTGKTASFALPLLERLLKE-DHESPC 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+QV   +      T +      GG +++ +R+ L  G  I+V TP
Sbjct: 73  LR--GLILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQRKALNAGVDILVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +   GLN+S + ++++DEAD MLD+GF  DIE +      +     FSAT S  
Sbjct: 131 GRLFDFVGQHGLNLSEVTSLIIDEADRMLDMGFVRDIEKVKSLVSSQHLTHFFSATYSDP 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA+        +N+A + R  + ++    LV    +   +  ++  +  +  +VF +
Sbjct: 191 VKLLAEKMLNSPQWINVA-QTRSAASVEQEIYLVDKRRKAELLSELIGRNNWQQVLVFAT 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S       L+    +     G+ +Q  R+  L+  + G+ RV +ATDVAARG+D+  
Sbjct: 250 TKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVMVATDVAARGLDIQA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P +
Sbjct: 310 LPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSD 349


>gi|296165192|ref|ZP_06847739.1| ATP-dependent RNA helicase RhlE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295899381|gb|EFG78840.1| ATP-dependent RNA helicase RhlE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 431

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/383 (33%), Positives = 197/383 (51%), Gaps = 8/383 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ G      +Q   L   L  +DVL   +TGSGKT+AF + L S L A + R    
Sbjct: 18  DALAKGGVHRPFPIQIETLPDTLAGRDVLGRGKTGSGKTLAFSIPLVSRLDAGDRR---P 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELA Q+   +  L A  G+ V    GGVS H++   L++G  IVV  P
Sbjct: 75  GKPTGLVLAPTRELATQIAATIAPLAAVRGLRVVTVFGGVSQHKQVAALKSGVDIVVACP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ K +++  ++  V+DEAD + DLGF   +  IL ++P   + L+FSAT+  A
Sbjct: 135 GRLDDLMKQKLVSLGAVQVTVIDEADHLADLGFLPTVTRILAATPAGGQRLLFSATLDAA 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + TL K +  + V  +IA        + +    V        +V+ L   G    I+F  
Sbjct: 195 VDTLVKRFLTNPVTRSIAEPKSVAPAMTHHFFCVDGPQAKKELVHRLAA-GDSRRILFMR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  + L +     V L G LSQ  R   L     G ARV +ATD+AARG+ + D
Sbjct: 254 TKHQARKLARQLTQSGIASVELHGNLSQNVRDRNLAAFAAGDARVLVATDIAARGVHVDD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE-- 370
           +ELV+H +     +  LHRSGRT RAG  G  V ++    +R  E + R+A +  V +  
Sbjct: 314 IELVVHVDPPPEHKAYLHRSGRTARAGASGDVVTIVLPEQRRDTESMMRKAAIRAVPQQV 373

Query: 371 --PAPSVEAIRERDAQRILQDPL 391
              +P ++A+  + + R +  P+
Sbjct: 374 TAASPVIQALAGQASARQVTAPV 396


>gi|219683483|ref|YP_002469866.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219621133|gb|ACL29290.1| possible ATP-dependent RNA helicase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|289178816|gb|ADC86062.1| ATP-dependent RNA helicase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 658

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/403 (32%), Positives = 200/403 (49%), Gaps = 36/403 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P ++   L+  G      +Q+  L   L  +DVL   QTGSGKT+AFGL L S L    
Sbjct: 33  VPGLLVRLLAADGKKTAFPIQQDTLPDSLAGRDVLGRGQTGSGKTLAFGLPLVSRLSSMD 92

Query: 63  ---------------LAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTG 102
                          L ++ RF    +     P  L +APTRELA Q+   L  L    G
Sbjct: 93  RADDQDFPRDMDSQTLRKSLRFKRGVSKYMPHPRGLVLAPTRELANQISDVLTPLADAYG 152

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           + V    GGV   R+ R L  GA IVV  PGRL D I  + L ++ ++ VVLDEADEM D
Sbjct: 153 MAVTTVYGGVKYERQFRALDAGADIVVACPGRLEDLIEQQALTLADVRIVVLDEADEMAD 212

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-- 220
           +GF   I+ IL    +  + ++FSAT+   +  +   +  D     + S +   S++D  
Sbjct: 213 MGFLPPIKRILKQIRQDAQHMLFSATLDHGVDEVVSEFLHDP---KVHSVDEVTSNVDSM 269

Query: 221 -YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            +   LV+ +D+   +  +    G +  I+F  T+    +    L +       L G LS
Sbjct: 270 THHLFLVSRNDKAAVVRELASGRGRR--ILFTRTKFQAKKLAHTLTQSGIPAAELHGNLS 327

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R   LQ+   G+  V +ATDVAARGID+ ++ LV+  E   +P++  HRSGRT RAG
Sbjct: 328 QHQRDRNLQVFESGQVNVLVATDVAARGIDVSNVGLVVQVEPPEDPKSFTHRSGRTARAG 387

Query: 340 RKGMSVFVIPQNMQRRAERLFREANVSV----VWEPAPSVEAI 378
           + G  V ++  + +R+   LF+E ++ +    V   +P V+ +
Sbjct: 388 QSGDVVTLMTPDQKRKIRHLFKEVDIKLKPVEVTPESPQVQEL 430


>gi|68249479|ref|YP_248591.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
 gi|68057678|gb|AAX87931.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
          Length = 418

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 187/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P  L +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLEYPHPRTLILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 359


>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 183/345 (53%), Gaps = 8/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++GY   T++Q   + P +  +DVL SA TG+GKT AF L +   LL    + S   
Sbjct: 18  ALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L A T + +A   GGV+             +VV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQDMVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEIISAETRWRNQTLLFSATLEGEA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   K+ V+V      R+   I    YRA  V    +   +V++L+    + +++
Sbjct: 196 IHAFAERILKEPVKVEADPSRRERKKILQWYYRADDV--QHKTALLVHLLKQPDVQKSVI 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDVAARG+D
Sbjct: 254 FVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRIDVLVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +  R
Sbjct: 314 IIDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHR 358


>gi|149191365|ref|ZP_01869617.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148834782|gb|EDL51767.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 188/342 (54%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--E 65
           PQ+I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   E
Sbjct: 18  PQII-EGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKTLAFLTATFNHLLTTPE 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D   P + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   L+ G 
Sbjct: 77  HDGRKP-NQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYGGDSYDKQLAKLEEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+      PK R  +
Sbjct: 136 DILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       + +++   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELFYPSNNEKMALLQTLVEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 187/352 (53%), Gaps = 8/352 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L    ++  T VQ A + P L  +DV+  AQTG+GKT A+ L +   L A 
Sbjct: 7   NLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDRLSA- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              F+ +    A+ +APTRELA Q+ +++E   +    + V +     GV+  ++RR + 
Sbjct: 66  -GEFA-SDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGMA 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  H+     ++SH+   VLDEAD MLD+GF DDI  I    P   + 
Sbjct: 124 MGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I  LA +  +D + V IA  +R    I   A +   + +   +  +    
Sbjct: 184 VMFSATMPPKIRKLAASILRDPIEVEIAI-SRPPESIMQSAYICHEAQKLPILRKLFEQS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F S +  V   T  L +  F V  +  +L Q +R   ++  ++G   V +ATD
Sbjct: 243 APKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQ 353
           + ARGID+ ++ +VI+ ++  +PE+ +HR GRT R    +G+++  + +  Q
Sbjct: 303 IVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQ 354


>gi|308271521|emb|CBX28129.1| ATP-dependent RNA helicase rhlB [uncultured Desulfobacterium sp.]
          Length = 530

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 189/341 (55%), Gaps = 4/341 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   L + G+   T +Q   L   L  +DV   AQTG+GKT AF   +AS +L+  
Sbjct: 41  IPPEVLMGLKDAGFTLCTPIQARALPLSLAGQDVAGQAQTGTGKTAAFLTTIASRILSLE 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R      P AL +APTRELA Q+  E E L+  TG+ +   IGG+   ++   L+ G  
Sbjct: 101 NRV--PRLPSALIVAPTRELAQQIHEEAEVLFRHTGLTLMQVIGGIDYQKQADMLRKGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           +V+ TPGR+ D+ +        +K +V+DEAD +LDLGF  D+ +IL   P   KR+ ++
Sbjct: 159 VVICTPGRIIDYFKQGVFKTEGIKIIVIDEADRLLDLGFSKDMRYILQKLPNYSKRQSML 218

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  L   Y      +++  E+     I+     V+   + + ++ +L+    
Sbjct: 219 FSATLSHRVMELTYEYMNLPEFISVTPEDVVVEGINQILYHVSKESKLSLLLGLLKREKW 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T++SV R T  L  + +    ++G+L Q +R + ++  + G  ++ +ATDVA
Sbjct: 279 SRVLIFANTKSSVERLTGKLKGNGYPAEGITGDLPQSKRFSLMERYKKGNIKILVATDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +RGI + D+  VI+ +L ++ E  +HR GRT RAG++G ++
Sbjct: 339 SRGIHVEDISHVINYDLPNDGEIYVHRIGRTARAGKEGSAI 379


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 199/372 (53%), Gaps = 10/372 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q+  +   L   D+L SAQTG+GKT  F L +   L+ +  R     
Sbjct: 23  AINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPILQKLV-DAPRSGNNR 81

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ AL + PTRELA QV   ++       +   V  GGVS++ +   L++G  +++ TP
Sbjct: 82  RPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMKLRSGVDVLIATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++S ++ +VLDEAD MLD+GF  DI  ++   PKKR+ L+FSAT S  
Sbjct: 142 GRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPKKRQNLLFSATFSDD 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     + V + +A  N     +     LV    +   +  ++     +  +VF  
Sbjct: 202 IKQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKKRKAELLSFMIGRENWQQVLVFTR 261

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+  
Sbjct: 262 TKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEQ 321

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL +  E+ +HR GRTGRA   G ++ ++      + +  E+L +++ + V+ 
Sbjct: 322 LPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLKDIEKLLKKS-IPVMA 380

Query: 369 ---WEPAPSVEA 377
              +EP PS++A
Sbjct: 381 IDGYEPDPSIKA 392


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 182/330 (55%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +    + +DV+  AQ+G+GKT  F +++   +  +           AL
Sbjct: 55  GFEKPSAIQQRAIKQITKGRDVIAQAQSGTGKTATFSISVLQMIDTQ------LRDTQAL 108

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 109 VLSPTRELAQQIQKVILALGDYMSVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDM 168

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K ++LDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 169 IRRRSLRTRSIKMLILDESDEMLNKGFKEQIYDVYRYLPPAIQVVLLSATLPHEILEMTN 228

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 229 KFMTDPIRILVKRDELTLEGI--KQFFVAVDKEEWKFDTLCDLYDTLTITQAVIFCNTKR 286

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ + +  F V+ + G++ Q+ER+  ++  R G +RV I TDV ARG+D+P + L
Sbjct: 287 KVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGESRVLICTDVWARGLDVPQVSL 346

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +I+ +L +N E  +HR GR+GR GRKG+S+
Sbjct: 347 IINYDLPNNRELYIHRIGRSGRYGRKGVSI 376


>gi|121591768|ref|ZP_01678973.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121546370|gb|EAX56627.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 444

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 12  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 69

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 70  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 129

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT++ A 
Sbjct: 130 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLAHAD 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 190 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 250 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 310 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 352

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 353 SFKRVEAFLQQEIQ 366


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 183/339 (53%), Gaps = 5/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   L  KD++  AQTG+GKT +F L +   L     R   A 
Sbjct: 15  AVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMIDILAHGRAR---AL 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    E       + +A+ IGGV +  + + L+ G  +++ TPG
Sbjct: 72  MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKALEKGVDVLIATPG 131

Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D   RGK L ++    +V+DEAD MLD+GF  DIE I    P +R+ L+FSAT+ P 
Sbjct: 132 RLMDLFERGKIL-LNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQRQTLLFSATMPPV 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +  +   + +A      ++I    V V    +  A+  +L     ++A++FC+
Sbjct: 191 IKKLADRFLSNPKSIEVARPATASTNIAQHLVKVDARKKREALRALLDGQQVQSAVIFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +V    K L    ++   + G++ Q  R   L+  RDG   + +A+DVAARG+D+  
Sbjct: 251 RKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNILVASDVAARGLDIKG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  V + +   +P++ +HR GRTGRAG KG++   + ++
Sbjct: 311 VSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKD 349


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 186/344 (54%), Gaps = 18/344 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 15  AINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAF-LIPAIQYLMDFPRRDPGF 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA Q+  + E L  +T + + V  GG++    +   +N   I++ TPG
Sbjct: 74  ARV-LIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKEIFENNNDILIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL +++  +  +  +++ ++LDEAD MLD+GFR ++  I D +  +R+  +FSAT+   +
Sbjct: 133 RLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNRRQCFLFSATLEGDS 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI--------DYRAVLVALSDRDNAIVNILRYHGA 244
           +   A+    D   +   S  ++ + I        DYR  L  L       VN L     
Sbjct: 193 VELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYRHKLELL-------VNTLNGPDV 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+ +ATDVA
Sbjct: 246 SKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ +I
Sbjct: 306 ARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLI 349


>gi|255323803|ref|ZP_05364929.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298983|gb|EET78274.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
          Length = 441

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/398 (32%), Positives = 203/398 (51%), Gaps = 8/398 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+ RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D   
Sbjct: 20  ICDGLATRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDRVFDDADIDE 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  +L+   A   V +A   GG     + + L  G  +++G
Sbjct: 80  LDGTPRALVVVPTRELAQQVTEDLQVAAAHLPVRLASIYGGRPYEEQIKKLNKGVDVIIG 139

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
           TPGRL D H RG  L +  +  +VLDEADEMLDLGF   +E IL +      + ++FSAT
Sbjct: 140 TPGRLIDLHERGN-LQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAHQTMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246
           +  AI TLA+ + +  + +   S  +  +    R V       D+   + + L+  G   
Sbjct: 199 MPGAILTLARRFMEKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAHALQGSGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ + ++    LA   F V A+ G+L Q+ R  +L   R G+  + +ATD+AAR
Sbjct: 259 TIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G ++ ++  +   + + +  E ++ 
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQVINDELDLG 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              EP P        +  + L  P  +D   G E K+V
Sbjct: 379 ---EPNPPQWFSTSPELAQALDIPAEVDETVGPETKVV 413


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 189/340 (55%), Gaps = 16/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  +L  +           AL
Sbjct: 48  GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 102 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 162 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +  D +R+ +  +      I  +   VA+ DR+    + ++++        A++FC+TR
Sbjct: 222 KFMTDPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLIDLYDTLTITQAVLFCNTR 278

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + 
Sbjct: 279 RKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVS 338

Query: 315 L---VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L   VI+ +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 339 LVSNVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 378


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 40  FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 99

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 100 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 158 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 217

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 218 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 277

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 278 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 336

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 337 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 396

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 397 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 435


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 184/337 (54%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+     +V TPGR
Sbjct: 78  PRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRYPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ +   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 198 VNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 258 ATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 318 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLV 354


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 12/370 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 141 FPDYVMNEVRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYILP-AVVHINNQ 199

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 200 PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDLERGVE 259

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 260 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 319

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----- 241
           AT    +  LA+ +  + ++VNI S +   ++ + R + V + D    IV ++       
Sbjct: 320 ATWPKEVRQLAEEFLNNYIQVNIGSLSL-SANHNIRQI-VDVCDESEKIVKLINLLTDIS 377

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + +A
Sbjct: 378 AESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVA 437

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L 
Sbjct: 438 TDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLI 497

Query: 360 --FREANVSV 367
              REAN ++
Sbjct: 498 QVLREANQTI 507


>gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 428

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 194/364 (53%), Gaps = 15/364 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   GY  +T +Q+  +    R +DVL SAQTG+GKT AF + +   +L +  + +
Sbjct: 12  LQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPILQQML-DKPKET 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +    A+ + PTRELA Q+   +      T + V    GGV +  +   L+ G  IV+ 
Sbjct: 71  VSGTTRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASKLKAGVDIVIS 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL +H+  K + +++++ VVLDEAD MLD+GF  D+  +L      R+ L+FSATIS
Sbjct: 131 TPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVRQTLLFSATIS 190

Query: 191 PAITTLA----KNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           P +  LA    KN+++  A ++N A++  QH       V+  +S+ D       +L    
Sbjct: 191 PTVNELAHKLLKNHEEIRATQLNSAADTVQH-------VMYPVSEEDKIRLFKTLLAEQN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF ST+    +    L            + SQ  R  A+   +  + +V IAT+V
Sbjct: 244 WYQVLVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQVLIATEV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L+ V++  L   PE+ +HR GRTGRAG++G ++  + +  +R  ER+ R  
Sbjct: 304 AARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIERLI 363

Query: 364 NVSV 367
           N  +
Sbjct: 364 NCKI 367


>gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis]
 gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis]
          Length = 777

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 191/373 (51%), Gaps = 27/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
            IP  I E + + GY + T +Q   +   L+ +D++  A+TGSGKT AF + L   +  L
Sbjct: 356 QIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGL 415

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R + A   P AL +APTRELA Q+  E+       G+     IGG+S   +   L+
Sbjct: 416 PKIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQLR 475

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  +++ IL+  P     
Sbjct: 476 LGVEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVK 535

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ P +  LAKNY +    V I S  +    
Sbjct: 536 PDSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVER 595

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ R  LV    +   ++ +L        I+F + +       K L +  F+   L G  
Sbjct: 596 VEQRVYLVNEQQKRKKLLELLNKDLEPPIIIFVNQKKGADVLAKSLEKMGFRATTLHGGR 655

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q++R  AL  ++ G   + +ATDVA RGID+ D+  VI+ +++   E+  HR GRTGRA
Sbjct: 656 NQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRA 715

Query: 339 GRKGMSVFVIPQN 351
           G+ G++V  + Q+
Sbjct: 716 GKTGIAVSFLTQS 728


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 198/374 (52%), Gaps = 9/374 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+     +V TPGR
Sbjct: 74  PRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 194 VNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 254 ATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN---MQRRAERLFREANVSV 367
            +  VI+ ++  + E  +HR GRTGRAG KG +V ++ P++    +R    L ++ N SV
Sbjct: 314 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQDLNFSV 373

Query: 368 VWEPAPSVEAIRER 381
             +     + ++ R
Sbjct: 374 FEDLKGKFKGLKPR 387


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 196/365 (53%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + ++++G+   TS+Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 89  FPEYVLKEITKQGFNEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINSQ 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S    P+AL +APTRELA Q+ +  +     +G+      GG     + RDL +G  
Sbjct: 148 PKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDSGVE 207

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 208 IVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 267

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+++ KD  ++N+ S     +    + + V    +++N +  +L+   A+
Sbjct: 268 ATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAE 327

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           +    IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 328 SENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 387

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +  F  P N  +  +  ++
Sbjct: 388 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKANDLIQV 447

Query: 360 FREAN 364
            +EAN
Sbjct: 448 LKEAN 452


>gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
 gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
          Length = 426

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 188/341 (55%), Gaps = 8/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           +  AL++ G+ + + +Q   L   L   DVL  AQTG+GKT AF +A+   LL   A  +
Sbjct: 52  VARALADMGFEHCSPIQAKSLPYSLSGHDVLGKAQTGTGKTAAFLIAVFEDLLRQPAPEE 111

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           RF  A  P AL IAPTREL +Q+ ++   +    G+ V   +GG+  +++ + L      
Sbjct: 112 RF--AGEPRALVIAPTRELVMQIAKDAAAIGKYAGLSVQTLVGGMDFNKQMQALHGQFVD 169

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           I+V TPGRL D    + + +  L+ +V+DEAD MLD+GF   ++ I+  +P+K  R+ L+
Sbjct: 170 ILVATPGRLLDFCERREVYLDQLEILVIDEADRMLDMGFIPQVKRIVRLAPRKTHRQTLL 229

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA+++  + V V I  E      ++    +V+  ++   + N++     
Sbjct: 230 FSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQFIYMVSGDEKLPLLCNLISMPDV 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KN ++F + R       + L +  ++V  LSGE+ Q +R   L+  ++G  +  +ATDVA
Sbjct: 290 KNVMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGSLQALVATDVA 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            RGI +  +  V++  L   PE+ +HR GRTGRAG  G S+
Sbjct: 350 GRGIHIDGVSHVVNYTLPEEPEDYVHRIGRTGRAGNTGQSI 390


>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 629

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/343 (37%), Positives = 188/343 (54%), Gaps = 13/343 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRE 93
           LR +DV+  A TGSGKT+AFGL     L+    R +P    P  L I+PTRELA+Q G+ 
Sbjct: 245 LRGRDVVGIAATGSGKTLAFGLP---GLVHVAARGTPGRGRPFMLVISPTRELAMQTGKV 301

Query: 94  LEWLYAKTGVVVAV-CIGGVSVHRERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
           L          + V CI G +  RE+ D ++   H++V TPGRL D      +++S +  
Sbjct: 302 LSDAGKGMNTPLNVQCIFGGAQRREQMDAMRKPVHVIVATPGRLLDLCEAGSIDLSAVTF 361

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
            VLDEAD MLD+GF  DI+ I+   P  R+ +MFSAT    +  +AK+Y    V+V + S
Sbjct: 362 NVLDEADRMLDMGFERDIKRIMAQMPTPRQTVMFSATWPQEVRRIAKDYLNRPVKVTVGS 421

Query: 212 ENRQHSDIDYRAVLVALSDRDNA-IVNILR-YHGAKN--AIVFCSTRASVSRFTKVLAEH 267
           ++   S    + V V    + N  ++++LR YH ++    +VF   +   +R  + L   
Sbjct: 422 DDLAASKNVTQIVEVIDPKQKNGRLLDLLRKYHKSRKNKVLVFALYKKEAARLEQFLQYK 481

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            +   A+ G+LSQ +R+  LQ  + G   + IATDVAARG+D+PD+E VI+       E 
Sbjct: 482 GYNTKAIHGDLSQGDRNRVLQEFKSGEVPLMIATDVAARGLDVPDVEYVINYTFPLTIEE 541

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367
            +HR GRTGRAG KG +  +  Q+ +  A  L    R A V+V
Sbjct: 542 YVHRIGRTGRAGAKGTAHTLFTQHDKHHAGGLGNVLRAAGVTV 584


>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
 gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 506

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 11/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA++  GY   T VQE  +   L  +D++ +A+TG+GKT AF L          DR   A
Sbjct: 15  EAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLP-------SLDRLGHA 67

Query: 73  ---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA Q+G     + A T   +   +GG+S   +   L++G  I++
Sbjct: 68  KGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHGVDILI 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P  R+ L+FSATI
Sbjct: 128 ATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLLFSATI 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +I         D   V IA +      ++   V VA + +   +  +L   G+   IV
Sbjct: 188 DASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVAQTLKPALLKAVLAEKGSDRVIV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR+      + L    +   A+  + SQ +R  AL     G+  V +ATDV ARGID
Sbjct: 248 FARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVATDVLARGID 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + +++ V++ +L + PE+ +HR GRTGRAG  G +V FV P+ 
Sbjct: 308 VEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPET 350


>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 491

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +   +L    +  
Sbjct: 19  ISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRILENRIKPQ 78

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +  + L ++PTREL+ Q+            +   + IGGV + R+ R L  G  ++V 
Sbjct: 79  PKTCRV-LVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVPMGRQVRSLMQGVEVLVA 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   L +  ++ +VLDEAD MLD+GF +DI  I+   P KR+ L FSAT+ 
Sbjct: 138 TPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMP 197

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   +D  RV +         I+ R + +  S +   +  IL+  G   A+VF
Sbjct: 198 KDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLATILQQDGVNQALVF 257

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L        A+ G  SQ  R   L   R G  R  +ATD+AARGID+
Sbjct: 258 TRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTLVATDIAARGIDV 317

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLFR----- 361
             +  V++ +L + PE  +HR GRT RAG +G ++ +     +    R  E+L R     
Sbjct: 318 DGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEETGYLRDIEKLIRIALPK 377

Query: 362 EANVSVVWEPAPSVEAIR--ERDAQR 385
           E + +   +PAPS    R  +R+ Q+
Sbjct: 378 EDHRTPGAKPAPSTAPQRGGQRNGQQ 403


>gi|21224259|ref|NP_630038.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|256784656|ref|ZP_05523087.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289768540|ref|ZP_06527918.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|2815333|emb|CAA16457.1| probable DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|289698739|gb|EFD66168.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 498

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 191/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL ++G      +Q A L   L  +D++   +TGSGKT+AFGLAL   L   
Sbjct: 75  DMPGELLAALGQQGVTVPFPIQAATLPNSLAGRDIMGRGRTGSGKTLAFGLAL---LART 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 132 AGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASALRGGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 310 -RVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  EA 
Sbjct: 369 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRLMSEAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 188/351 (53%), Gaps = 17/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T +QE  +   L  +D++  AQTG+GKT AF L + S L   +D   P 
Sbjct: 14  DALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPILSKL---SDGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ + +E + Y      VAV  G  G+   +E+R L  GA +++
Sbjct: 71  KAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKRGLAMGADVII 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   VLDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLISHLSLGNVDLSEVSFFVLDEADRMLDMGFSDDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENR-----QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
              I  LA+    D V V +A         Q + + Y A  V+L      +  +      
Sbjct: 191 PRKIQDLARTILHDPVEVKLAVSKPADKIVQSAYVCYEAQKVSL------VKKLFAERPP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF S++  V      L    F+V A+  +L QQER   +   +  +  V +ATD+ 
Sbjct: 245 HRVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIV 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ARGID+ D++LVI+ ++  + E+ +HR GRT RA   G ++ ++ +  Q+R
Sbjct: 305 ARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQR 355


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/337 (37%), Positives = 183/337 (54%), Gaps = 12/337 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +D++  A TGSGKT+AFG+ AL   L  +      +     L ++PTRELA Q+   LE 
Sbjct: 25  RDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSRCLVLSPTRELAQQIAAVLEE 84

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             A  GV V    GG S   +   L++G  IVV TPGRL D +      +  +  +VLDE
Sbjct: 85  AGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQDFVDEGVCKLDQITYLVLDE 144

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA--VRVNIASENR 214
           AD MLDLGF   +  I+   P++R+ +M SAT   ++  LA+ + +DA  V++ + SE+ 
Sbjct: 145 ADRMLDLGFEPAVRAIVSHIPQERQTIMLSATWPTSVQKLAQEFIQDASPVKITVGSEDL 204

Query: 215 QHSDIDYRAVLVALSD--RDNAIVNILR-YHGAK--NAIVFCSTRASVSRFTKVLAEHLF 269
             ++ D   ++  L D  RD  +  +LR YH  K    +VF   +    R    L +  +
Sbjct: 205 S-ANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNRVLVFVLYKKEAVRVENFLQKQGW 263

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +V  + G+ SQQ R+ AL   +DG   + IATDVAARG+D+PD+E VI+       E+ +
Sbjct: 264 KVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAARGLDIPDVEFVINYSFPLTTEDYV 323

Query: 330 HRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           HR GRTGRAG+KG +  F    +  R  E   + REA
Sbjct: 324 HRIGRTGRAGKKGTAHTFFTTADKARAGELVNILREA 360


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 198/374 (52%), Gaps = 9/374 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+     +V TPGR
Sbjct: 78  PRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRYPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAE 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 198 VNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 258 ATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN---MQRRAERLFREANVSV 367
            +  VI+ ++  + E  +HR GRTGRAG KG +V ++ P++    +R    L ++ N SV
Sbjct: 318 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQDLNFSV 377

Query: 368 VWEPAPSVEAIRER 381
             +     + ++ R
Sbjct: 378 FEDLKGKFKGLKPR 391


>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 448

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 117/331 (35%), Positives = 181/331 (54%), Gaps = 5/331 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  +         V  GG + + + + L  G   +V TPGR
Sbjct: 74  PRGVILVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKALARGPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     D  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 194 VNDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADADYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VI+ ++  + E  +HR GRTGRAG KG
Sbjct: 314 SVTHVINFDMPKHTEEYVHRIGRTGRAGNKG 344


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENG 257

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG    ++ RDL+ G H
Sbjct: 258 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCH 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 437

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L +  +   ++ G+ SQ++R  AL   R GR  + +AT
Sbjct: 438 GKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVAT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 541


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 181/352 (51%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L ++G V  T +Q   L   L  +D++  A TGSGKT+ F L +    L E  
Sbjct: 63  PEPILKKLKDKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPMIMVALQEEI 122

Query: 68  RF--SPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRERR 119
               +P   P  L I P+RELA Q    +E             +   +CIGGV +  +  
Sbjct: 123 MMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPMKEAGYPELRPLLCIGGVDMRSQLE 182

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    +
Sbjct: 183 VVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 242

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  L
Sbjct: 243 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 302

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V +
Sbjct: 303 Q-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 361

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 362 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 413


>gi|256786770|ref|ZP_05525201.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289770661|ref|ZP_06530039.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289700860|gb|EFD68289.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 528

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 192/372 (51%), Gaps = 5/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL ++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 61  DLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGK 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L       G+  A  +GG+S+ R+   L++GA
Sbjct: 121 --RAEPRR-PLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRSGA 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 178 EVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRMLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V   D+  A + I    G  
Sbjct: 238 SATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATIEIAARDG-- 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K L +   +   L G  SQ +R+  L   +DG+    +AT+VAA
Sbjct: 296 RVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALVATNVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 356 RGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRLMSLAGI 415

Query: 366 SVVWEPAPSVEA 377
           +    P  S EA
Sbjct: 416 TPQVTPVRSGEA 427


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 185/344 (53%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 199 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAMKENG 257

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG    ++ RDL+ G H
Sbjct: 258 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCH 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 318 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 377

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 378 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 437

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L +  +   ++ G+ SQ++R  AL   R GR  + +AT
Sbjct: 438 GKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVAT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 498 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 541


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 180/353 (50%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 105 FPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 164

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRER 118
                 P   P  L I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 165 VSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGVDMRSQL 224

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 225 EVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  
Sbjct: 285 QRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 344

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +   ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V 
Sbjct: 345 LQ-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVL 403

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 404 VATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 456


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 226/440 (51%), Gaps = 23/440 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQD--PLFLDSIQGDEKKMVDV 406
            + +  ++ ++A +       PS   I     +DA R+L    P  +   +   +K+++ 
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIE- 675

Query: 407 LLAKHDPEKIAAGFLRIHRA 426
              K D E +AA    I  A
Sbjct: 676 --EKGDVEALAAALAHISGA 693


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +   +       +      AL
Sbjct: 53  GFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIV------DTAVREVQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     V V  CIGG S+  + R L+NG H+V GTPGR+CD 
Sbjct: 107 ILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 167 IKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  + VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 227 KFMTEPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 284

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ QQER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 285 KVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGDTRVLITTDVWARGLDVQQVSL 344

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/336 (33%), Positives = 180/336 (53%), Gaps = 8/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDRFSPAS 73
           GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L          R  P  
Sbjct: 5   GYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHGPRQ 64

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
           A   L + PTRELA QV    + +YA+   + + CI GGV ++ + + L  G  ++V  P
Sbjct: 65  A-RVLVLTPTRELAAQVHDSFK-VYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVACP 122

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSAT S  
Sbjct: 123 GRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSKD 182

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     +  R+ +   N     I+ R   +    +   + +++     +  +VF  
Sbjct: 183 IVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVGAWEQVLVFTR 242

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD+AARG+D+  
Sbjct: 243 TKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGLDIDQ 302

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ EL +  E+ +HR GRTGRAGR G ++ ++
Sbjct: 303 LPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLV 338


>gi|21222144|ref|NP_627923.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7210999|emb|CAB76979.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 528

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 192/372 (51%), Gaps = 5/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL ++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 61  DLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGK 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L       G+  A  +GG+S+ R+   L++GA
Sbjct: 121 --RAEPRR-PLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQAGALRSGA 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 178 EVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAADGQRMLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V   D+  A + I    G  
Sbjct: 238 SATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATIEIAARDG-- 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K L +   +   L G  SQ +R+  L   +DG+    +AT+VAA
Sbjct: 296 RVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTALVATNVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 356 RGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTRLMSLAGI 415

Query: 366 SVVWEPAPSVEA 377
           +    P  S EA
Sbjct: 416 TPQVTPVRSGEA 427


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/355 (35%), Positives = 193/355 (54%), Gaps = 14/355 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ E GY   T++Q   +       D++ SAQTG+GKT AF L  A  LLA 
Sbjct: 29  NLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLP-ALNLLAT 87

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                 +  P  L + PTRELA QV  E    Y K      V I GG+    + + L   
Sbjct: 88  PHELK-SRGPRILVLVPTRELATQVN-EAARKYGKFIRARTVSIVGGMPYPLQNKLLSQP 145

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  D+E I +    +R+ L+
Sbjct: 146 LDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQTLL 205

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           FSAT+   I  +AK   K+   + +A +  +H++I+ R   V  ++ ++  + ++L    
Sbjct: 206 FSATLDGDIARVAKQILKNPKTIQVAGQKEKHANIEQRLHYVDDMTHKNKLLEHLLIAPE 265

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRARVCI 299
               I+F ST+    R   VLAE L+    +  AL G+++Q  R+  L  +R G  +V +
Sbjct: 266 VNQVIIFTSTK----RHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGDVKVLV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG+ G+++     NM R
Sbjct: 322 ATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRTGRAGKTGIAI-SFASNMDR 375


>gi|51245265|ref|YP_065149.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876302|emb|CAG36142.1| related to ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 424

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 2/333 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + ++E+GY   + +Q   +   L ++DV+  A TG+GKT  F L +   LL+  D   P 
Sbjct: 14  QTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMVQ-LLSGGDSPQPC 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL I PTRELA QV   ++   +   +      GGV +  +   LQ G  ++V TP
Sbjct: 73  TV-RALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKLQAGLDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + ++   LK +VLDEAD MLDLGF DDI  I    P KR+ LMFSAT S  
Sbjct: 132 GRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQTLMFSATFSEE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA     D V + + ++      I  +   V    +   ++++++ +  +  +VF  
Sbjct: 192 IKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPVDQERKSALLIHLIKKYNWQQLLVFSR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+         L E      ++    +Q  R+ AL   ++G   V +ATD+A+RGID+  
Sbjct: 252 TKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVLVATDIASRGIDVHQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ +L    E+ +HR GRTGRAG  G++V
Sbjct: 312 LPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAV 344


>gi|330504745|ref|YP_004381614.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
 gi|328919031|gb|AEB59862.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
          Length = 482

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 190/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ + LL
Sbjct: 99  FKLAPELM-HAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLL 157

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              A  +R+     P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ + 
Sbjct: 158 QTPAPKERY--MGEPRALIIAPTRELVVQIAKDAAELTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 121 LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++    I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  +   V I  EN     ++     VA +D+   + N
Sbjct: 276 GDRQTLLFSATFTDDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASADKYKLLYN 335

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     +VF + +  V R  + L         +SG++ Q +R   L+  R G  RV
Sbjct: 336 LVTQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGHIRV 395

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 396 LVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSI 443


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 187/348 (53%), Gaps = 12/348 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I   +    Y + T VQ+  L   L ++D++  AQTGSGKT AF L + + L+  
Sbjct: 390 NLPETIAANVKRANYDSPTPVQKFSLPIILADRDLMACAQTGSGKTAAFLLPVLTNLVRT 449

Query: 66  ---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +  FS    P A+ + PTREL  Q+  E       T +   V  GG S + + ++LQ
Sbjct: 450 GLASSSFSEKQLPQAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTNYQLKELQ 509

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177
            G H+++ TPGRL D I RGK + +S ++ ++LDEAD MLD+GF  +I  ++DS    + 
Sbjct: 510 KGCHLLIATPGRLMDFINRGK-IGLSSVQYIILDEADRMLDMGFETEIRKLVDSPGMPAK 568

Query: 178 KKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +R  LMFSAT    I  LA ++ ++D + + +       SD+    + V   D+ N ++
Sbjct: 569 NERHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGDKRNKLI 628

Query: 237 NILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +L          +VF  T+ S       L +  +   ++ G+  QQER  AL+  + G+
Sbjct: 629 ELLADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALRDFKSGK 688

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             + +AT VAARG+D+P +E V++ +L S  +  +HR GRTGR G  G
Sbjct: 689 CPILVATSVAARGLDIPKVEHVVNYDLPSEVDEYVHRIGRTGRCGNLG 736


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 180/352 (51%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E  
Sbjct: 150 PEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEV 209

Query: 68  RFS--PASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERR 119
                P   P  L I P+RELA Q    +E             +   +CIGGV +  +  
Sbjct: 210 SMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGVDMRSQLE 269

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI  + D    +
Sbjct: 270 VVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 329

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  L
Sbjct: 330 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 389

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   +   ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V +
Sbjct: 390 Q-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 448

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 449 ATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 500


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 15/342 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY   T VQ+  +   +  +D++  AQTGSGKT  F   + +          P  A    
Sbjct: 214 GYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQGGY 273

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  +
Sbjct: 274 GRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDL 333

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK-RRML 183
           +V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I  I+   D  P   R+ L
Sbjct: 334 LVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQTL 393

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++ KD + +++        +I  +   V   D+ + +++IL  HG
Sbjct: 394 MFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYVEDVDKRSVLLDILHTHG 453

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  +++F  T+      +  L    F   ++ G+ +Q+ER  AL+M R GR  + +AT V
Sbjct: 454 AGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRTGRCPILVATAV 513

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 514 AARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 555


>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
 gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
          Length = 434

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  +V +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|50405707|ref|XP_456492.1| DEHA2A03454p [Debaryomyces hansenii CBS767]
 gi|74659594|sp|Q6BZ77|DBP3_DEBHA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49652156|emb|CAG84444.1| DEHA2A03454p [Debaryomyces hansenii]
          Length = 527

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/318 (35%), Positives = 183/318 (57%), Gaps = 14/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + +L  + +         L I+PTRELA+Q+   L
Sbjct: 152 LSGKDVIGVAETGSGKTFAFGVPAINNILTHDKK-----GLKVLCISPTRELALQIYDNL 206

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L A T +      GGVS H +   L+N A +VV TPGRL D +    L++  ++ +VL
Sbjct: 207 VDLTANTPLKCVAVYGGVSKHEQVSSLRN-ASVVVATPGRLIDLLNDGALSLDSIEYLVL 265

Query: 155 DEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF  DI+ ++  ++   R+ LMF+AT    +  LA  +    V+V+I   N
Sbjct: 266 DEADRMLEKGFEQDIKSVMQQTNHANRQTLMFTATWPKEVRELASTFMNSPVKVSIGDRN 325

Query: 214 RQHSD--IDYRAVLVALSDRDNAIVNILR-YHGAKN----AIVFCSTRASVSRFTKVLAE 266
              ++  I     ++   D++  ++++LR Y    N     ++F   +   +R   +L  
Sbjct: 326 ELSANKRITQIVEVIEPYDKEKKLLSLLRKYQSGSNKDDKVLIFALYKKEATRIENLLVR 385

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + F+V A+ G+LSQQ+R++AL   + G+  + +ATDVAARG+D+P++++VI+       E
Sbjct: 386 NSFKVSAVHGDLSQQQRTSALGAFKAGKTTLLLATDVAARGLDIPNVKVVINLTFPLTVE 445

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G++
Sbjct: 446 DYVHRIGRTGRAGQTGIA 463


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 186/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLFHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 7/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ I + + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 82  NFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLP-AVVHINN 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+AL +APTRELA Q+ +++   +  T +V   CI GG     + RDL+ G
Sbjct: 141 QQRPQRGEGPVALILAPTRELAQQI-QKVAHEFGSTTMVRNTCIFGGSPKGPQARDLERG 199

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM
Sbjct: 200 VEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLM 259

Query: 185 FSATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +SAT    +  LA+ +  D ++VNI     + N     I          ++   ++  + 
Sbjct: 260 WSATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIG 319

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+  V   TK +    +  +++ G+ SQ ER   L   R G++ + +A
Sbjct: 320 SDSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVA 379

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N QR+A+ L
Sbjct: 380 TDVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKDL 438


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 192/381 (50%), Gaps = 13/381 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           NI + +  AL E+ Y   T +QE  +   L  +D+L  AQTG+GKT AF + +   LLA 
Sbjct: 8   NISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPIIEQLLAA 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                + +P S   AL + PTRELA+Q+   L      T +   V  GGV    +  +L+
Sbjct: 68  PMPQRKGAPRSI-RALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKSQTDELR 126

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+  TPGRL D +    + +  ++  VLDEAD MLD+GF  D++ +L   P K++ 
Sbjct: 127 AGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKLPPKKQT 186

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+  +I  LAK+   +  RV +   +     I      V    +   +  +L   
Sbjct: 187 LFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVYRVEKPQKKELLAQLLLGE 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+       + L+       ++ G+ SQ  R  AL   ++GR+ V IATD
Sbjct: 247 AGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGRSNVIIATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERL 359
           +AARGID+  L+LV++ +L   PE  +HR GRTGRAG +G ++         M R  E+L
Sbjct: 307 IAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAPMLREIEKL 366

Query: 360 F------REANVSVVWEPAPS 374
                  ++ N+  + EPA S
Sbjct: 367 TGIKLVQQKHNLPSLGEPAAS 387


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 187/353 (52%), Gaps = 25/353 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+E  + N T VQ   +   L  +D+  +A TGSGK++AF + +   LL     F 
Sbjct: 18  IIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIVQKLLT----FR 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL ++PTRELA Q+    + L A   +   + IGGVS   +R  L     I++G
Sbjct: 74  GLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLTPAPDIIIG 133

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR  D I   K L + HL+  VLDEAD +L  GF   +  I+   P+K + L+F+AT+
Sbjct: 134 TPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQTLLFTATL 193

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNA 247
           +  +  LA   QK +  +++I      + +I    +     +R    +V + R       
Sbjct: 194 NDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKEERRLPYLVALCRNMCKDKT 253

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVA--------LSGELSQQERSNALQMMRDGRARVCI 299
           +VF  T+A        LA H+F +          L  +LSQ  R+ A++  R+ + +  +
Sbjct: 254 LVFFPTKA--------LAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYLL 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQ 350
           A+D+AARGID+PD+E VI+  + +  E  +HR+GRTGRAG+KG  +S++V P+
Sbjct: 306 ASDLAARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPE 358


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 188/346 (54%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S   +     +P +A         P A+ +APTRELA 
Sbjct: 197 RDLMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIKKVYPTAVILAPTRELAT 256

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG S+  + + ++ G +++V TPGRL D +  + +++++
Sbjct: 257 QIYDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYISLAN 316

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I++ S       R+ LMFSAT    I  LA ++ KD 
Sbjct: 317 VKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDY 376

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V +++        +I  + + V   D+++ ++++L        ++F  T+ +    T  L
Sbjct: 377 VFLSVGRVGSTSENITQKILYVEDFDKNDTLLDLLAASNEGLTLIFVETKRAADSLTDFL 436

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   + GRA + +AT VAARG+D+P++  VI+ +L ++
Sbjct: 437 IMEGFKATAIHGDRTQGERERALSAFKTGRATILVATAVAARGLDIPNVTHVINFDLPND 496

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++        +N+ +    L  EAN  V
Sbjct: 497 IDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVSLLSEANQEV 542


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L       +       L
Sbjct: 53  GFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIIQSL------DTTVRETQVL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H++ GTPGR+ D 
Sbjct: 107 CLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVISGTPGRVFDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 167 IRRRVLRTRFIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 227 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 286

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V  + G++ Q+ER   ++  R G +RV I TDV ARGID+  + LVI
Sbjct: 287 DWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRTGLSRVLITTDVWARGIDVQQVSLVI 346

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 347 NYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|331005516|ref|ZP_08328893.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
 gi|330420663|gb|EGG94952.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
          Length = 410

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 186/352 (52%), Gaps = 2/352 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++  GY  +T +QE  + P  R +DVL  AQTG+GKT AF L +   ++ ++ +  
Sbjct: 12  IQKAITGCGYEKMTPIQEQAIVPARRGRDVLACAQTGTGKTAAFALPILQQMIDKSRKSE 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P AL + PTRELA Q+   +          +    GGV + ++     +   I++ 
Sbjct: 72  EVNTPRALILTPTRELAEQLANTIGAYAKHLPFTIVAAYGGVKISKQAAKFSSDVDILIA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL + +     ++++++ VVLDEAD MLD+GF +D++ +L  + K R+ L+FSAT+S
Sbjct: 132 TPGRLLELVTQCHTHLANVEFVVLDEADRMLDMGFVNDVQTLLKGTAKNRQCLLFSATLS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             +  L+    K+ + + +   N     I++  V      R  A+ N +L  +     +V
Sbjct: 192 AGVNELSHKLLKNHLEIRVTKANSTADTIEH-IVYPIEEKRKIALFNELLEEYNWYQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+         L E+        G+ +Q  R  AL   +  + +V IAT+VAARG+D
Sbjct: 251 FTSTKGQADSLLASLKENKIPAAICHGDKTQGARRRALADFKSAKIQVLIATEVAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  LE V++  L    E+ +HR GR GRAG KG ++ ++ +  +R  + + R
Sbjct: 311 IQGLEYVVNYNLPFLAEDYVHRIGRAGRAGNKGYAISLVSREEERNLDAIQR 362


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 13/371 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LSE G      +Q A L   L  +DVL   +TGSGKT+AFGL L   L     R +    
Sbjct: 5   LSELGVREPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLPL---LARTAGRRAEPKQ 61

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA +VV TPGR
Sbjct: 62  PLALILVPTRELAQQVTEALAPYAEALRLRMATVVGGMSIGRQAAALRHGAEVVVATPGR 121

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAI 193
           L D I  +   +  +   VLDEAD+M D+GF   +  +LD   P  +RML FSAT+   +
Sbjct: 122 LHDLIERRACRLGRVGITVLDEADQMCDMGFLPHVSEVLDQVHPDGQRML-FSATLDRDV 180

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L + Y  D V  ++       + +D+  ++V   DR      I    G    ++F  T
Sbjct: 181 DHLVRRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYAVTTEIAARDG--RVLLFLDT 238

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAARG+ + DL
Sbjct: 239 KHAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFKNGQITVLVATNVAARGLHVDDL 298

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           +LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   RL  EA +       P
Sbjct: 299 DLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLAGQRREMSRLMAEAGIE------P 352

Query: 374 SVEAIRERDAQ 384
           ++  +R  +A+
Sbjct: 353 TITKVRSGEAE 363


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/370 (34%), Positives = 193/370 (52%), Gaps = 8/370 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           AL+E+GY   T +Q   +   L+  D++  AQTG+GKT AFGL L   L  +     S  
Sbjct: 15  ALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLLQHLGTSAQTVGSGP 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA QV   L        +  A   GGV +  +   L+ G  +++  P
Sbjct: 75  RKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLDALRRGVDLLIACP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           GRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+ R+ L+FSAT   
Sbjct: 135 GRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPKQNRQTLLFSATFEE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA+ +  +   +     N     I +R   V  + +   ++++L     K  +VF 
Sbjct: 195 GIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGARKRELLLHLLAADSRKQTLVFA 254

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    + T  L +   +  A+ G  SQ +R  AL   +  R  V +ATD+AARGID+ 
Sbjct: 255 RTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASRITVLVATDIAARGIDID 314

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF-REANVSV 367
            L  VI+ +L    E+ +HR GRTGR G +G +V ++ Q+   + R   RL  R+ ++  
Sbjct: 315 QLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLRAIARLLKRDMDIRD 374

Query: 368 V--WEPAPSV 375
           V  +EPA  +
Sbjct: 375 VPGFEPATPI 384


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 11/335 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   +++Q+  + P    +DV+  AQ+G+GK+    LAL   L           
Sbjct: 35  GLYSYGFEKPSAIQQRAVMPICSGRDVIAQAQSGTGKSSMISLALCQMLDTSTREVQ--- 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELA Q  +    L     V V  CIGG S+  + R L +G HIV GTPG
Sbjct: 92  ---ALVLSPTRELATQTEKVALALGNFMSVQVHACIGGRSIGEDIRKLDHGVHIVSGTPG 148

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L   ++K ++LDEADEML+ GF++ I  +    P + ++++ SAT+   +
Sbjct: 149 RVFDMIKRRNLRTRNIKTLILDEADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPVEV 208

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVF 250
             +   +  D +R+ +  +      I  +   VA+   +   + + ++        A++F
Sbjct: 209 LEMTTKFMTDPIRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIF 266

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARGID+
Sbjct: 267 CNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGGTTRVLITTDVWARGIDV 326

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 327 QQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAI 361


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 194/375 (51%), Gaps = 32/375 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+P+ + E ++  GY   T +Q A +   ++ +D++  A TGSGKT AF L L   +  L
Sbjct: 378 NLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAEL 437

Query: 64  AENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              D F    A  P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L
Sbjct: 438 PRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSL 497

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           ++GA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P    
Sbjct: 498 RDGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNE 557

Query: 178 ----------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 + R+ +M++AT+  A+  +A+ Y +    V I S    
Sbjct: 558 KPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEA 617

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R  ++A  D+    +  +   G   A  IVF + + +     + + +  F  V 
Sbjct: 618 VDTVEQRVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQWGFSSVT 677

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q +R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR G
Sbjct: 678 LHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIG 737

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAG+ G+++  +
Sbjct: 738 RTGRAGKSGVAITFL 752


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 200/373 (53%), Gaps = 17/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
           N+ + +   +   GY   ++VQ   +    + +DV+  AQ+G+GKT  F + +  ++ L+
Sbjct: 27  NLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS 86

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D         AL ++PTRELAVQ+   +  L     V    CIGG SV  + + L  G
Sbjct: 87  VRD-------TQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+V GTPGR+ D IR + L   ++K ++LDEADE+L+ GF++ I  I    P   ++++
Sbjct: 140 QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVV 199

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  +   +  + VR+ +  +      +    + V   + + + + ++     
Sbjct: 200 VSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLT 259

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++FC++R  V   T+ + E  F V ++ GE+ Q+ER   +Q  R G +RV I TD+
Sbjct: 260 ITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDI 319

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR- 361
            ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++ FV  +++     R+ R 
Sbjct: 320 WARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDV-----RILRD 374

Query: 362 -EANVSVVWEPAP 373
            E   S V +  P
Sbjct: 375 IEQYYSTVIDEMP 387


>gi|322828077|gb|EFZ32017.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 621

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 205/390 (52%), Gaps = 20/390 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +   L 
Sbjct: 55  FDLLPNTV-EALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLA 113

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                N++      P A+   PTRELA+QV R++    +K G VV    GGV+   + R 
Sbjct: 114 RMTKSNEQPVRGRGPAAVIFCPTRELAIQV-RDVIAGISK-GFVVTALYGGVAYSTQERA 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           L +G  +VV TPGR  D +  + L +  +K V LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 172 LYSGVDVVVATPGRAKDFLEKRTLCLDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQN 231

Query: 180 --------RRMLMFSATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                    + L+FSAT+   + T +    +K+ + +      R  + I +       S+
Sbjct: 232 GSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEFIDMVGQGTMRAANTIKFYRRKCHFSE 291

Query: 231 RDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
               + ++++ +  ++   +VF +T+      +  +         L G++ Q++R + ++
Sbjct: 292 VSCMLADLVKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQRESTMK 349

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V + 
Sbjct: 350 SFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLH 409

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAI 378
               +   ER+ R A +     PAP+ + I
Sbjct: 410 QPKDEYIVERIERHAKIKFEVLPAPTRDEI 439


>gi|297797185|ref|XP_002866477.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312312|gb|EFH42736.1| hypothetical protein ARALYDRAFT_496396 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 669

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 199/376 (52%), Gaps = 15/376 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDR- 68
           E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   A+N R 
Sbjct: 109 EKLKAKGIEALFPIQATTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKNKRK 168

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A AP  L + PTRELA QV  + +      G+      GG S   +   L+ G  IV
Sbjct: 169 MGYARAPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCIYGGDSYTAQENKLRRGVDIV 228

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFS 186
           VGTPGR+ DHI  + +++SHL+  VLDEADEML +GF +D+E IL     P K + L+FS
Sbjct: 229 VGTPGRIKDHIERQNIDLSHLQFRVLDEADEMLRMGFVEDVELILGKVEDPTKVQTLLFS 288

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILR-YH 242
           AT+   +  ++  + ++D   +++   ++  +    R + +  +    A  I +I+  Y 
Sbjct: 289 ATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYS 348

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F   +  VS  + +LA       AL GE+ Q +R   L   R+G+    +AT+
Sbjct: 349 SGGQTIIFAEKKNEVSELSGLLAGSR----ALHGEIPQAQREVTLAGFRNGKFSTLVATN 404

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ D++L+I  E     E  +HRSGRTGRAG  G++V  + ++ +    R+ +E
Sbjct: 405 VAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV-TLYESRKSSVSRIEKE 463

Query: 363 ANVSVVWEPAPSVEAI 378
           A +   +  AP  + I
Sbjct: 464 AGIKFEYISAPQPDDI 479


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 185/334 (55%), Gaps = 7/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   ++ +DV+  AQ+G+GKT  F + +    + +  +F       AL
Sbjct: 42  GFEAPSAIQSRAIAQVIQGRDVIAQAQSGTGKTATFTIGMLQ--VVDTSKFETQ----AL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++ TRELA Q+   +  L     +    C+GG SV  + R L  G HIV GTPGR+ D 
Sbjct: 96  VLSTTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRALSKGQHIVSGTPGRVLDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L+I ++K +VLDEADE+L  GF+D I  I    P   ++++ SAT+  A+ +L  
Sbjct: 156 IKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPSTQVVVVSATLPKAVLSLTN 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D V++ +  +      I+   + V   D + + + ++        A++FC+T+  V
Sbjct: 216 KFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDLYDSLTITQAVIFCNTKKKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L +  F V ++ G++ Q ER   +   R G +RV I+TD+ ARGID+  + LVI
Sbjct: 276 DWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLGNSRVLISTDIWARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L  + EN +HR GR+GR GRKG+++  + +N
Sbjct: 336 NYDLPYDKENYVHRIGRSGRFGRKGVAINFVTRN 369


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 183/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++     T L E          
Sbjct: 46  GFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQSMDTTLRETQ-------- 97

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L ++PTRELAVQ+ + +  L     +    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 98  -VLCLSPTRELAVQIQKVILALGDFMNIQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 156

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  
Sbjct: 157 FDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILE 216

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+
Sbjct: 217 MTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 276

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV ARGID+  + 
Sbjct: 277 RKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGIDVQQVS 336

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367


>gi|300781219|ref|ZP_07091073.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
 gi|300532926|gb|EFK53987.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
          Length = 408

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 190/367 (51%), Gaps = 6/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ I   L+++G      +QEA +   L  +DVL    TGSGKT AFGL +
Sbjct: 1   MPTFSDLGLPRPIVNVLTKQGIEEPFPIQEAAIPAVLDGRDVLGRGPTGSGKTFAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     +      P  L +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LALLAGSPSK---PGHPRGLVLAPTRELAAQIRQRLDDPAAAAGLRVLEVVGGVNINNHI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L+   +    +DEAD+M D+GF   +  ++D++P+
Sbjct: 118 RSLAAPVDLLVATPGRAQDLINQGKLSFDSVAVTAIDEADQMADMGFLPQVRKLVDATPE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + Y  D V  + A        + +  +LV   +  N IV +
Sbjct: 178 NGQRLLFSATLDGDVEKLVQRYLTDPVTHSTAPAQAAVDTMQHYQLLVGSRESRNEIVPL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L     +   L G+  Q  R+ A++   DG   V 
Sbjct: 238 IAAREGKT-IMFMRTKHGVDRQVKKLRRVGIEAQPLHGDKGQGARTRAIEGFTDGSVPVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  ++ LHR+GRT RAG  G  V ++    ++  ++
Sbjct: 297 VATDIAARGIDISDVSLVVHIDPPAEHKSYLHRAGRTARAGTSGTVVTLVMDEQRKEVDQ 356

Query: 359 LFREANV 365
           L R+A V
Sbjct: 357 LLRKAGV 363


>gi|195342874|ref|XP_002038023.1| GM18587 [Drosophila sechellia]
 gi|195576880|ref|XP_002078301.1| GD23375 [Drosophila simulans]
 gi|194132873|gb|EDW54441.1| GM18587 [Drosophila sechellia]
 gi|194190310|gb|EDX03886.1| GD23375 [Drosophila simulans]
          Length = 403

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 223 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 283 DQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 343 NYDLPSNRENYIH 355


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 60  GFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------IRETQAL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APT+ELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 114 ILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 174 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 234 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 294 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 354 NYDLPNNRELYIHRIGRSGRYGRKGVAI 381


>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
          Length = 403

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 223 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 283 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 343 NYDLPSNRENYIH 355


>gi|302892891|ref|XP_003045327.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256726252|gb|EEU39614.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 596

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 188/343 (54%), Gaps = 22/343 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q A     L  +DV+  A+TGSGKT+AF L     + A   + + A     + 
Sbjct: 196 YKTPTPIQAASWPFTLSARDVIGVAETGSGKTMAFALPCVEAVSAIGGKSTKA-----VI 250

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q   ++  + A  G+      GG S   +R  L+ GA I+V TPGRL D +
Sbjct: 251 VSPTRELAMQTHTQMAQVAALNGLKCVCLFGGASKDDQRAQLRRGADIIVATPGRLKDFM 310

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLA 197
               +++S    VVLDEAD MLD GF +DI+ IL S P  ++R+ LMF+AT   ++  LA
Sbjct: 311 SDDTVDLSQAAFVVLDEADRMLDKGFEEDIKQILGSCPPREQRQTLMFTATWPQSVQALA 370

Query: 198 KNYQKDAVRVNIASENRQ----------HSDIDYRAVLVALSDRDNAIVNILRYH---GA 244
            ++    V++ I S  ++          ++ I     ++   +++  ++ +L+ H     
Sbjct: 371 SSFMVSPVKITIGSSGKETAGGAVELQANARISQSVEVLEPREKEFRLLQLLKEHQQGKQ 430

Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           KN   +VFC  +   +R    L+    +V  + G+L Q++R+ +L+  + G   V +ATD
Sbjct: 431 KNDRILVFCLYKKEATRVENFLSRKGVRVCGIHGDLRQEQRTKSLEAFKTGVTPVLVATD 490

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++
Sbjct: 491 VAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAI 533


>gi|254565179|ref|XP_002489700.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|238029496|emb|CAY67419.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|328350119|emb|CCA36519.1| ATP-dependent RNA helicase DDX18 [Pichia pastoris CBS 7435]
          Length = 546

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/351 (34%), Positives = 200/351 (56%), Gaps = 17/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  +T+VQ   + P L  +DVL +A+TGSGKT+AF +     L +   +F P 
Sbjct: 97  KAIGNMGFTKMTAVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSL--KFKPR 154

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A+ I PTRELA+Q   V REL   +++T     + IGG +   E   L  G +I++
Sbjct: 155 NGTGAIVITPTRELALQIFGVARELMESHSQT---FGILIGGANRRAEAEKLMKGVNIII 211

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+++DEAD +L++GF D+++ I+   P + R+ ++FSA
Sbjct: 212 ATPGRLLDHLQNTKGFIFKNLKALIIDEADRILEIGFEDEMKQIIKILPNENRQTMLFSA 271

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           T +  +  LA+ + +K  + +N+ SEN + S +D       + D D     + + L+ + 
Sbjct: 272 TQTTKVEDLARVSLRKGPLYINVDSEN-ETSTVDGLEQGYVVCDSDKRFLLLFSFLKRNQ 330

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +    V I TDV
Sbjct: 331 KKKIIVFLSSCNSVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGVLICTDV 390

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           AARG+D+P ++ +I  +   +P + +HR GRT R    KG S+ F+IP  +
Sbjct: 391 AARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLIPSEL 441


>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
 gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  +V +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|302822183|ref|XP_002992751.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
 gi|300139492|gb|EFJ06232.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
          Length = 733

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 21/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A ++ G+   T +Q   L   L+ +D++  AQTGSGKT AF L +   L  +   F   
Sbjct: 187 DACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQALFQQCHPF--- 243

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A  ++PTRELA+Q+  + E L ++ GV     +GGVS+  +   L    HIVV TP
Sbjct: 244 ---FACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATP 300

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ ++K +VLDEAD++L   F  +++ IL   P++R+  +FSAT++ 
Sbjct: 301 GRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSATMTN 360

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   ++  +V ++S+      +    V V    +D   V +L       A+VF 
Sbjct: 361 KVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGSTAMVFT 420

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  S  R   +L    F  + +SG++SQ +RS AL   + G   + I TDVA+RG+D+P
Sbjct: 421 RTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRGLDIP 480

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
            +++           + +HR GRT RAGR G ++ ++ Q   ++ +R E L 
Sbjct: 481 SVDV-----------DYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLI 521


>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 533

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 14/375 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++E+GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L   E  R +  
Sbjct: 15  AVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQRLSGGEPARNAKG 74

Query: 73  SA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA QV   L        +      GGV +  +   L  G  IVV T
Sbjct: 75  KIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQINALARGMDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH   + +++S ++ +VLDEAD MLD+GF  D+  I+   PK+R+ L+FSAT S 
Sbjct: 135 PGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPKQRQNLLFSATFSE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAI 248
            I  LA ++  +  +V +A   RQ++  D    +V   DR+   + +V+++R       +
Sbjct: 195 EIKRLAGDFLVNPQQVAVA---RQNATADLVEQIVFPVDRERKRDMLVHLIRERNWPQTL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L +         G  +Q  R  AL   + G+ +V +ATD+AARGI
Sbjct: 252 VFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVLVATDIAARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANV 365
           D+  L +V++ EL + PE+ +HR GRTGRAG  G ++ ++  +     R  E+L R    
Sbjct: 312 DIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFLRDIEKLVRNPIT 371

Query: 366 SVV---WEPAPSVEA 377
             V   +EP P+ +A
Sbjct: 372 QEVIPGFEPDPNAKA 386


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 181/331 (54%), Gaps = 14/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L   L A +     A A   L
Sbjct: 36  GYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCL---LQACDPHTREAQA---L 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ       +    G+    CIGG S   + R L++G HI+ GTPGR+ D 
Sbjct: 90  ILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESGVHIISGTPGRVFDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR K L ++ LK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + +
Sbjct: 150 IRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPP-LQIILVSATLPADVLEMTE 208

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCSTR 254
            +  +   + +    R    +D  +   V++ +  N    ++  + +    +A+VFC+TR
Sbjct: 209 KFMTEPASILV---KRDEITVDSVKQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNTR 265

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  K +    F V A+ G++ Q ER   ++  R+G +RV I TD+ ARGID+  + 
Sbjct: 266 KKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLITTDLWARGIDVERVS 325

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LV+  +L  + E  +HR GRTGR GR G+++
Sbjct: 326 LVLSYDLPLSREQYIHRIGRTGRMGRTGLAI 356


>gi|311898243|dbj|BAJ30651.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 884

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/320 (35%), Positives = 176/320 (55%), Gaps = 10/320 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-------ASAPLALAIAPTRELAVQVG 91
           DV+  A+TG+GKT+ FGL L   ++ + D  +        +  P AL + PTREL  QV 
Sbjct: 11  DVIGQAKTGTGKTLGFGLPLIERVVVQADVAAGRATAEQLSDGPQALIVVPTRELCTQVT 70

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            +L+       V V    GG +   +   L+ G  IVVGTPGRL D    + L++S ++A
Sbjct: 71  NDLQTAGKVRDVRVLAVYGGRAYEPQVEALKKGVDIVVGTPGRLLDLAGQRKLDLSKVRA 130

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           +VLDEADEMLDLGF  D+E I+   P KR+ L+FSAT+   + +LA+ Y      +  A+
Sbjct: 131 LVLDEADEMLDLGFLPDVEKIITMLPAKRQTLLFSATMPGQVISLARRYMSQPTHIRAAA 190

Query: 212 ENRQHS---DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
            +   +   +I+         D+   +  IL+  G   A++FC T+ + +   + L +  
Sbjct: 191 PDDTGTTVANIEQHIFRAHSLDKVEMVSRILQADGRGLAMIFCRTKRTAADVAEQLTKRG 250

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  VI+ + + + +  
Sbjct: 251 FAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQCTDDEKTY 310

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           LHR GRTGRAG  G +V ++
Sbjct: 311 LHRIGRTGRAGASGTAVTLV 330


>gi|153831249|ref|ZP_01983916.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229522732|ref|ZP_04412148.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229527951|ref|ZP_04417342.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|297579800|ref|ZP_06941727.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
 gi|148873269|gb|EDL71404.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229334313|gb|EEN99798.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229340717|gb|EEO05723.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297535446|gb|EFH74280.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
          Length = 452

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|15600832|ref|NP_232462.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153823246|ref|ZP_01975913.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227811688|ref|YP_002811698.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229506763|ref|ZP_04396272.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510442|ref|ZP_04399922.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517427|ref|ZP_04406872.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605237|ref|YP_002875941.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254850327|ref|ZP_05239677.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|298499926|ref|ZP_07009732.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
 gi|9657444|gb|AAF95975.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519233|gb|EAZ76456.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227010830|gb|ACP07041.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229345463|gb|EEO10436.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352887|gb|EEO17827.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357114|gb|EEO22032.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229371723|gb|ACQ62145.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254846032|gb|EET24446.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|297541907|gb|EFH77958.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
          Length = 452

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 193/369 (52%), Gaps = 17/369 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T +QE  +   L  +D++  AQTG+GKT AF L + S L   +D   P 
Sbjct: 14  DALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPILSKL---SDGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ + +E + Y      VAV  G  G+   +E+R L  GA +++
Sbjct: 71  KAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQEKRGLAMGADVII 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   VLDEAD MLD+GF DDI  I+   P++R+ +MFSAT+
Sbjct: 131 ATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYLPQERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENR-----QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
              I  LA+   +D V V +A         Q + + Y A  V+L      +  +      
Sbjct: 191 PRKIQDLARTILRDPVEVKLAVSKPADKIVQSAYVCYEAQKVSL------VKKLFAERPP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F S++  V      L    F+V A+  +L QQER   +   +  +  V +ATD+ 
Sbjct: 245 HRVIIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQIDVLVATDIV 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++LVI+ ++  + E+ +HR GRT RA   G ++ ++ +  Q+R   +     
Sbjct: 305 ARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRFASIEHFLE 364

Query: 365 VSVVWEPAP 373
             +   P P
Sbjct: 365 TEIEKRPLP 373


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 132 FPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L +APTRELAVQ+ +E     A + +      GG    ++ RDL  G  
Sbjct: 191 PLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDLARGVE 250

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 251 ICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 310

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    + TL ++Y  D ++V I S      H+      VL     RD  + ++      
Sbjct: 311 ATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATAD 370

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           K A  ++F ST+ +    T  L    +  +A+ G+  Q ER   L+  + G++ + +ATD
Sbjct: 371 KEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGKSPIMVATD 430

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RL 359
           VAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G +V +  +   +      ++
Sbjct: 431 VAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKI 490

Query: 360 FREANVSV 367
            REAN +V
Sbjct: 491 MREANQTV 498


>gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
          Length = 533

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 14/375 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPA 72
           A++E+GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L   E  R +  
Sbjct: 15  AVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQRLSGGEPARNAKG 74

Query: 73  SA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTRELA QV   L        +      GGV +  +   L  G  IVV T
Sbjct: 75  KIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQINALARGMDIVVAT 134

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH   + +++S ++ +VLDEAD MLD+GF  D+  I+   PK+R+ L+FSAT S 
Sbjct: 135 PGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPKQRQNLLFSATFSE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAI 248
            I  LA ++  +  +V +A   RQ++  D    +V   DR+   + +V+++R       +
Sbjct: 195 EIKRLAGDFLVNPQQVAVA---RQNATADLVEQIVFPVDRERKRDMLVHLIRERNWPQTL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L +         G  +Q  R  AL   + G+ +V +ATD+AARGI
Sbjct: 252 VFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVLVATDIAARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANV 365
           D+  L +V++ EL + PE+ +HR GRTGRAG  G ++ ++  +     R  E+L R    
Sbjct: 312 DIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFLRDIEKLVRNPIT 371

Query: 366 SVV---WEPAPSVEA 377
             V   +EP P+ +A
Sbjct: 372 QEVIPGFEPDPNAKA 386


>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 447

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 198/374 (52%), Gaps = 9/374 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKSFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+     +V TPGR
Sbjct: 78  PRAVILAPTRELAKQVYGELRSMLGGLSYDAALILGGENFNDQVKALRRYPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ ++LDEAD MLDLGF  ++  I  ++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMFSATLDHAE 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  +  L    D   AI+  +L     +  I+F 
Sbjct: 198 VNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 258 ATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDVASRGLDIA 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN---MQRRAERLFREANVSV 367
            +  VI+ ++  + E  +HR GRTGRAG KG +V ++ P++    +R    L ++ N SV
Sbjct: 318 TVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYLQQDLNFSV 377

Query: 368 VWEPAPSVEAIRER 381
             +     + ++ R
Sbjct: 378 FEDLKGKFKGLKPR 391


>gi|118572555|sp|Q0UR48|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 610

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 212/379 (55%), Gaps = 18/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   EA+   G+ ++T +Q   + P L  KDVL +A+TGSGKT+AF L  A  +L+ 
Sbjct: 137 NLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAF-LIPAIEMLS- 194

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 195 SMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQT---FGIVIGGANRRAEAEKLA 251

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G ++++ TPGRL DH+   +G    +LK++++DEAD +L++GF D++  I+   P  R+
Sbjct: 252 KGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQ 311

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
            ++FSAT +  +  LA+ + +   + +N+    ++HS ++       + D D     + +
Sbjct: 312 TMLFSATQTTKVEDLARISLKAGPLYINV-DYRKEHSTVEGLEQGYVICDSDTRFRLLFS 370

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ H  K  IVF S+  SV  + ++L      V+ L G+L QQ R+N      + ++  
Sbjct: 371 FLKKHQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQARTNRFFEFCNAQSGT 430

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRR 355
            I TDVAARG+D+P+++ VI  +   +P + +HR GRT R    KG S+ F++P  +   
Sbjct: 431 LICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSEGKGRSLMFLLPSEIGFL 490

Query: 356 AERLFREANVSVVWEPAPS 374
             +L +EA V +V    P+
Sbjct: 491 --KLLKEARVPLVEFELPA 507


>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 516

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 181/343 (52%), Gaps = 11/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA++  GY   T VQE  +   L  +D++ +A+TG+GKT AF L          DR   A
Sbjct: 25  EAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLP-------SLDRLGHA 77

Query: 73  ---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA Q+G     + A T   +   +GG+S   +   L++G  I++
Sbjct: 78  KGGQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQINKLKHGVDILI 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P  R+ L+FSATI
Sbjct: 138 ATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPASRQTLLFSATI 197

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +I         D   V IA +      ++   V VA + +   +  +L   G+   IV
Sbjct: 198 DASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVAQTLKPALLKAVLAEKGSDRVIV 257

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR+      + L    +   A+  + SQ +R  AL     G+  V +ATDV ARGID
Sbjct: 258 FARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVLVATDVLARGID 317

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + +++ V++ +L + PE+ +HR GRTGRAG  G +V FV P+ 
Sbjct: 318 VEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPET 360


>gi|332992020|gb|AEF02075.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 414

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 2/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            ++E+GY   + +Q+  +   L ++D++  AQTG+GKT +F L +   LLA+  R  P +
Sbjct: 15  TVAEKGYTTPSPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPILQ-LLADKPRSEP-N 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL IAPTRELA QV + +E       V      GGV +  ++  L  G  I++ TPG
Sbjct: 73  CVRALIIAPTRELAAQVAQNVEQYSQNLKVRSTAVFGGVRIEPQKYALAQGVDILIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +N  HL+ +VLDEAD MLDLGF D I  I    P+KR+ L+FSAT S  I
Sbjct: 133 RLLDLYEQGDINFEHLEILVLDEADRMLDLGFIDHIHHIQKLLPEKRQTLLFSATFSKEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA         + +A        I      V    ++  +++++  +     +VF  T
Sbjct: 193 KTLATTMLNTPKTIELARAKDHIEKITQILHPVDKERKNELLIHLIENNDWSQILVFTRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L        ++    +QQ R+ AL   RDG  +V I TD+AARGID+  L
Sbjct: 253 KRGADELRNELEAKGIVAESIHANRTQQARTLALNGFRDGSIKVLIGTDLAARGIDIQQL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L    E+ +HR GRTGRA  +G+++
Sbjct: 313 PCVINVDLPYVAEDYIHRIGRTGRASSEGLAI 344


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 190/366 (51%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----------NDR 68
           Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S + A+           N R
Sbjct: 241 YTRPTPVQKHAIPIIIGKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLKDNGR 300

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PL+L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 301 YGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHL 360

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R+ +
Sbjct: 361 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRQTM 420

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 421 MFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATG 480

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G+  + +AT 
Sbjct: 481 KDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKCPILVATA 540

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A   F E
Sbjct: 541 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 588

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 589 KNINIT 594


>gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 369

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 180/346 (52%), Gaps = 7/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +QE  +   L+  DV+  AQTG+GKT AF L +   LL  N   S  + P  L
Sbjct: 20  GYETPTPIQEQAIPLVLKGHDVMGLAQTGTGKTAAFALPILQRLLTGNK--SGRALPSVL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+      L   TG+     IGGV ++ + +   +   ++V  PGRL   
Sbjct: 78  VLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKAFSH-CRVIVACPGRLVRL 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    ++++H+  +VLDEAD MLD+GF  DI+ IL   P +R+ L+FSAT+   I  LA+
Sbjct: 137 LNNGSVSLTHIDTLVLDEADRMLDMGFMPDIKRILAKLPARRQNLLFSATMPQDIRKLAE 196

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           N   D   V +A+     S +++       + +   +  +L     ++ +VF  T+    
Sbjct: 197 NILNDPKTVQVANTQPVES-VEHSFYATENNRKSELLTKLLDRAEHQSVLVFTKTKHKAK 255

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + LA   +    L G +SQ +R  AL   RDG   + +ATD+AARGID   +  VI+
Sbjct: 256 NLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIMVATDIAARGIDCERISHVIN 315

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
            ++    E   HR GRTGRAGR G +V ++    +   R  ER+ R
Sbjct: 316 FDMPDTVETYTHRIGRTGRAGRSGHAVSLVTGEDKTQVRDIERVMR 361


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 183/337 (54%), Gaps = 13/337 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   +S+Q   +   L  +D+L  A+TGSGKT AF + +    L +         PLAL 
Sbjct: 138 YTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMLQHCLVQPP-IRRGDGPLALV 196

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           +APTRELA Q+ +E++  ++++   +  CI  GG ++ ++R +L+ G  I V TPGR  D
Sbjct: 197 LAPTRELAQQIEKEVQA-FSRSLESLKNCIVVGGTNIEKQRSELRAGVEIAVATPGRFID 255

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H++    ++S +  VVLDEAD MLD+GF   I  I+ S P+K + L+FSAT+   I  LA
Sbjct: 256 HLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALA 315

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AI 248
           K Y  + V+V +   +   +++    V V+ S++ + ++++L    ++           I
Sbjct: 316 KEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKIDRLLDLLVEEASQAEKCGHRFPLTI 375

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +       + L       V+L G  SQ ER  ALQ  R     + +ATDVA+RG+
Sbjct: 376 VFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQNFRSSSTSILVATDVASRGL 435

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  VI+ +L    E+ +HR GRTGRAG  G++ 
Sbjct: 436 DVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIAT 472


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 198/373 (53%), Gaps = 33/373 (8%)

Query: 5   ENIP------------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ENIP            ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT 
Sbjct: 201 ENIPPHITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTA 260

Query: 53  AFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AF + + + +     R  P  A         PL L +APTRELA Q+  E      ++ +
Sbjct: 261 AFLVPILNQIYESGPRPPPVQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRM 320

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLD 162
             AV  GG ++  + R+L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD
Sbjct: 321 RPAVVYGGSNIVDQMRELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRYLVLDEADRMLD 379

Query: 163 LGFRDDIEFIL--DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           +GF   I  I+  D+ P   +R+ LMFSAT    I  LA+++  + + + +        +
Sbjct: 380 MGFEPQIRRIVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSEN 439

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVV 272
           I  + V V   D+ + ++++L+     +       +VF  T+       + LA   + V 
Sbjct: 440 ITQKIVWVEEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVT 499

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           ++ G+ +Q+ER  AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR 
Sbjct: 500 SIHGDRTQREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRI 559

Query: 333 GRTGRAGRKGMSV 345
           GRTGR G  G++ 
Sbjct: 560 GRTGRMGNLGLAT 572


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 180/352 (51%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E  
Sbjct: 150 PEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEV 209

Query: 68  RFS--PASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERR 119
                P   P  L I P+RELA Q    +E             +   +CIGGV +  +  
Sbjct: 210 SMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIGGVDMRSQLE 269

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI  + D    +
Sbjct: 270 VVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 329

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  L
Sbjct: 330 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 389

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   +   ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V +
Sbjct: 390 Q-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 448

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 449 ATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 500


>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|12644381|sp|Q02748|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
 gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
 gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
 gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
           melanogaster]
 gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
           melanogaster]
 gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
           melanogaster]
 gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
           melanogaster]
 gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
          Length = 403

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 223 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 283 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 343 NYDLPSNRENYIH 355


>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 633

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 205/392 (52%), Gaps = 24/392 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +   L 
Sbjct: 55  FDLLPNTV-EALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVEKLA 113

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                N++      P A+   PTRELA+QV R++    +K G VV    GGV+   + R 
Sbjct: 114 RTTKSNEQPVRGRGPAAVIFCPTRELAIQV-RDVIAGISK-GFVVTALYGGVAYSTQERA 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           L +G  +VV TPGR  D +  + L    +K V LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 172 LYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQN 231

Query: 180 --------RRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                    + L+FSAT+   + T   + +N  K+ + +      R  + I +       
Sbjct: 232 GSTEGNPTHQTLLFSATVPEWVHTCSFIPRN--KEFIDMVGQGTMRAANTIKFYRRKCHF 289

Query: 229 SDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           S+    + ++++ +  ++   +VF +T+      +  +         L G++ Q++R + 
Sbjct: 290 SEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQREST 347

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V 
Sbjct: 348 MKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVL 407

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           +     +   ER+ R A +     PAP+ + I
Sbjct: 408 LHQPKDEYIVERIERHAKIKFEVLPAPTRDEI 439


>gi|294818017|ref|ZP_06776659.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294322832|gb|EFG04967.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 475

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 17/377 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
            +P  +   L+  G  +   +Q A L   L  +D+L  A+TGSGKT+AFGLAL    + L
Sbjct: 49  GLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLARTAGL 108

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            AE  R      PLAL + PTRELA QV   L       G+  A  +GG++++R+   L+
Sbjct: 109 RAEAKR------PLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALR 162

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +   LD  P   + 
Sbjct: 163 AGAEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQR 222

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +  L ++Y  + V   +       + +++  + V  +D+      I    
Sbjct: 223 LLFSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADKYATATEIAARD 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+  V +FT+ L     Q  AL    SQ +R++ L   +DG   V +AT+
Sbjct: 283 G--RVLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVATN 340

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+  +
Sbjct: 341 VAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRMMSD 400

Query: 363 ANVSVVWEPAPSVEAIR 379
           A +       P+V  +R
Sbjct: 401 AGIR------PTVTQVR 411


>gi|269795054|ref|YP_003314509.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097239|gb|ACZ21675.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 456

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 181/361 (50%), Gaps = 2/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  KDVL   +TGSGKT+AF L L + L A 
Sbjct: 8   SLPAALCDELARQGITTPFPIQVATLPDTLAGKDVLGRGRTGSGKTLAFALPLVTRLAAT 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    P AL + PTRELA Q+   L  L    G+V  V  GGV+  R+   L  G 
Sbjct: 68  KPRRA-VRVPRALVLCPTRELANQIEATLAPLARSLGLVTTVIYGGVTQRRQVSALNGGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+  PGRL D ++ K L +  ++  V+DEAD M +LGF   +  I+  +P+  + L+F
Sbjct: 127 DVVIACPGRLEDLLQQKALTLEAVEVSVIDEADHMAELGFLPGVRRIMKKTPRGSQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   +    V   + S     + + +  + V       A+V  L   G  
Sbjct: 187 SATLDHGVDELVDRFLDRPVTHVVESPRSSGAAMTHHVLAVPDPGEKAAVVARL-ASGTG 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  TR    +  K+L       V L G+L+Q  R   L+    G  RV +ATDVAA
Sbjct: 246 RRVLFTRTRLQAKKLAKILTAQGIPAVELHGDLAQNVRERNLEAFTSGLVRVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELV+H +  +  ++ LHRSGRT RAGR G  V ++    Q     L R A +
Sbjct: 306 RGIHVDGVELVVHVDPPAEHKSYLHRSGRTARAGRAGDVVTIMLPEQQGEVRDLLRLAKI 365

Query: 366 S 366
           +
Sbjct: 366 T 366


>gi|149198198|ref|ZP_01875245.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149138800|gb|EDM27206.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 542

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 190/349 (54%), Gaps = 12/349 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+ E  +   T VQE +L   L+ +DV   AQTG+GKT AF +++ +  +       
Sbjct: 126 VQRAIHEMDFKFCTPVQEGVLPISLKGQDVAAKAQTGTGKTAAFLISMYNHFVNNPQTEV 185

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  P AL +APTRELA+Q+G + E L     + V    GG+   ++ + L+    I V 
Sbjct: 186 KAGTPRALILAPTRELALQIGADAEGLGKYCDIRVETFFGGMDFDKQAQILRGRVDIAVA 245

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSAT 188
           TPGRL D+ R K +N+  ++ + +DEAD MLD+GF  D+  I+   P   KR   ++SAT
Sbjct: 246 TPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKIVGYLPGRDKRITQLYSAT 305

Query: 189 ISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           ++ ++  LA ++  +   +V I  E     ++D +   V  + ++N I+  L+    K  
Sbjct: 306 LNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQKVYTVTANQKENVILWHLKNEEVKRM 365

Query: 248 IVFCSTRASVSRFTKVLAEHLFQ-----VVALSGELSQQERSNALQMMRDGRARVCIATD 302
           I+F + +    R    LA+ L+Q     +  L+G++ Q++R   L+  R G+ +V +ATD
Sbjct: 366 IIFANRKFDCER----LADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQVLVATD 421

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VA RGI + D+  V++ EL   PE+ +HR GRTGRA   G ++    +N
Sbjct: 422 VAGRGIHVDDVSHVVNYELPYEPEDYVHRVGRTGRASALGKAISFADEN 470


>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 517

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 191/346 (55%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 114 NICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSETGSGKTACFIIPILQELKIK 173

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   + +    GGV +  +  +L    
Sbjct: 174 KQSF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKKP 227

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++GTPGR+ DH+   KG N+ +LK ++ DEAD++L L F   I  +L   PK R   +
Sbjct: 228 NIIIGTPGRILDHLNNTKGFNLKNLKYLIFDEADKLLSLDFESSINKLLLILPKNRITFL 287

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ +++ L K   K+ +++ ++++      +    + + L  +   + ++  Y   
Sbjct: 288 FSATMTKSVSKLKKASLKNPIQIQVSNKYSTVKTLIETYIFLPLKYKYTYLCSLCFYFTN 347

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KN I+F +T A+  +          + + L G+L+Q +R ++L + +  +  + I+T V 
Sbjct: 348 KNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILISTQVG 407

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+DL ++++VI+ +L S  E  +HR GRT RAG+ G S+  + Q
Sbjct: 408 ARGLDLKNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQ 452


>gi|307111894|gb|EFN60128.1| hypothetical protein CHLNCDRAFT_56582 [Chlorella variabilis]
          Length = 863

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 190/370 (51%), Gaps = 29/370 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------A 59
           N+P+ + +A+   GY   + +Q A +   L+ +DV+  A+TGSGKT AF L +       
Sbjct: 445 NLPKSLRKAVERAGYKKPSPIQMAAIPLGLQFRDVIGIAETGSGKTAAFVLPMLVYIEKQ 504

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L   D    A  P ++ +APTRELA Q+  E   L   T   V   +GG S+  +  
Sbjct: 505 PPMLGNPD--IEAEGPYSVVLAPTRELAQQIEEEARNLAHYTEFRVVSVVGGQSIEDQGV 562

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSS 176
            L+ G  IVV TPGRL D I      ++    VVLDEAD M+DLGF      +  +LD+ 
Sbjct: 563 ALRKGCEIVVATPGRLVDCIERSYAVLNQCNYVVLDEADRMIDLGFEPQASAVMGVLDAM 622

Query: 177 PKK-----------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           P                   R   MFSAT+ PA+  LA+ Y +  V + I +  +   +I
Sbjct: 623 PSSNLKPENEDEPLESNRVYRTTYMFSATMPPAVERLARKYLRRPVVITIGTAGKATDNI 682

Query: 220 DYRAVLVALSDRDNAIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             R ++V  +++  ++   L   G  +  IVF +T++      + L    ++V  L G  
Sbjct: 683 TQRVIMVKENEKARSLEQELNAMGDDQRIIVFANTKSQCDAVARQLGNMDYRVTMLHGGK 742

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ +R  +++  R+    V +ATDVA RGID+P++ LVI+ ++++  E   HR GRTGRA
Sbjct: 743 SQDQREESIKGFREDVYNVLVATDVAGRGIDVPNVALVINYDMANTIEQYTHRIGRTGRA 802

Query: 339 GRKGMSVFVI 348
           GRKG +V  +
Sbjct: 803 GRKGTAVTFL 812


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 31/366 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + E+ 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V+  V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSV 367
           E N+++
Sbjct: 547 ERNINI 552


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 8/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEDSVLDALDAMNFQECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA+Q+ +++E + Y      VAV  G  G+   +
Sbjct: 61  NQL---SKGGYPEDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    D V V +A  ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPTKIQQLAKTILHDPVEVKLAV-SKPAEKIIQAAYICYEAQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   TK L      V  +  +L Q +R   +   R+ R  
Sbjct: 237 SLFQSQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q R 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQTRF 356

Query: 357 ERLFREANVSVVWEPAP 373
           +++       +   P P
Sbjct: 357 KQIETFLGKDIYKLPVP 373


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 192/373 (51%), Gaps = 22/373 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+A         
Sbjct: 200 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQFGRQRK 259

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 260 AYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 319

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ LMFSAT
Sbjct: 320 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVADRQTLMFSAT 379

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H     +
Sbjct: 380 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSVLLDILHTHAGGLTL 439

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+  R+GR  + +AT VAARG+
Sbjct: 440 IFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGL 499

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANV 365
           D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++        + + R    L +EAN 
Sbjct: 500 DIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMELLKEANQ 559

Query: 366 SVVWEPAPSVEAI 378
            V     P +EAI
Sbjct: 560 EV----PPFLEAI 568


>gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
 gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
          Length = 480

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 140/424 (33%), Positives = 214/424 (50%), Gaps = 25/424 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PAS 73
           L   G+   T +Q   +   L  +DV+  AQTG+GKT AF L +        +R     +
Sbjct: 18  LETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPIL-------ERIDLGVT 70

Query: 74  APLALAIAPTRELAVQVG---RELEWLY---AKTG--VVVAVCIGGVSVHRERRDLQNGA 125
           A  AL + PTRELA+QV    REL  L     K G  + V    GG S+ R+ + L+ G 
Sbjct: 71  AVQALILTPTRELALQVTEAIRELSGLSEGPVKLGRSLQVLTVYGGQSIDRQMQRLRRGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L +  LK +VLDEADEML +GF  D+E IL+++P   +   F
Sbjct: 131 HIVVGTPGRIIDMLNRGSLKLDQLKWMVLDEADEMLSMGFIQDVEKILEAAPADHQTAFF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           SAT+  +I  L   + +  + V +         I     +V     +  A+  IL     
Sbjct: 191 SATMEASIRKLVSKHLRSPINVTVEQPKATPKRIRQCVYMVPRGWSKSRALQPILEMEDP 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A++F  TRA+ +  T  L      V    G L+Q +R   L      + R  +ATD+A
Sbjct: 251 ESALIFVRTRAAAAELTSQLQAAGHSVDEYHGNLNQAQRERLLSRFHQSQVRWVVATDIA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF-REA 363
           ARG+D+ DL  VI+ +L  + E+ +HR GRTGRAGR+G ++ +I Q + RR  RL  R  
Sbjct: 311 ARGLDVNDLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLI-QAVDRRKLRLIERHV 369

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAG 419
             ++     P+   I  +  +++       +++ G+       +V  L  ++DP  IAA 
Sbjct: 370 RQTLTVRTIPTRSQIEGKQLEKM--QAKVREALAGERMASFLPLVSQLCEEYDPHAIAAA 427

Query: 420 FLRI 423
            L++
Sbjct: 428 ALQM 431


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 31/366 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +             E+ 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V+  V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSV 367
           E N+++
Sbjct: 547 ERNINI 552


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 31/366 (8%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----------END 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +             E+ 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKESG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V+  V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V  +D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  G+            A   F 
Sbjct: 499 AVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGL------------ATSFFN 546

Query: 362 EANVSV 367
           E N+++
Sbjct: 547 ERNINI 552


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 186/352 (52%), Gaps = 18/352 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +             EN R
Sbjct: 195 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 254

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 255 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 314

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 315 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 374

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + +++IL   G
Sbjct: 375 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATG 434

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           + +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 435 SDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 494

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++  F   +NM 
Sbjct: 495 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 546


>gi|294630456|ref|ZP_06709016.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833789|gb|EFF92138.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 514

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 185/361 (51%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 81  DLPARLLTALEREGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 137

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV   L       G+  A  +GG+S+ R+   L+ GA
Sbjct: 138 AGRRAEPRQPLALVLVPTRELAQQVTDALTPYARALGLRAATVVGGMSIGRQAGALRGGA 197

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + L+F
Sbjct: 198 ELVVATPGRLKDLIDRGDCRLDEVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQRLLF 257

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y  D V  ++       + +++  + V  +D+      I    G  
Sbjct: 258 SATLDRNIDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHDTDKHRTTTEIAARDG-- 315

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R TK L     +   L G  SQ +R+  L   + G+  V +AT+VAA
Sbjct: 316 RTIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRNRTLTQFKTGQVTVLVATNVAA 375

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 376 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRAMNRLMASAGI 435

Query: 366 S 366
           S
Sbjct: 436 S 436


>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
 gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDYK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  +V +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 408

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 189/371 (50%), Gaps = 16/371 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q+  +   L  +D+L  AQTGSGKT A+GL L    L              L I PT
Sbjct: 24  TTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPLLQKTLPMTPHIQ------TLIIVPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV + L  +     + V    GGV    ++  L     ++V TPGRL D I  + 
Sbjct: 78  RELATQVSQALGLIAKPMHIDVCPVCGGVDQQWQQDQLAQNPQLIVATPGRLLDLIEQQI 137

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +N+S L+ +VLDEAD +L++GF  D++ I+   P K++ L+FSAT+ P +   A     D
Sbjct: 138 INLSSLQHLVLDEADRLLEMGFWPDVQRIMAHLPAKKQTLLFSATLLPELEEKALQPLND 197

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            ++++    N+   +I+ +  LV    +   ++++L+ H     +VF S R +     K 
Sbjct: 198 PIKISANPPNQTVPEIEEQLYLVNKGSKAQVLIHLLKQHHWSQVLVFISARDNADALAKK 257

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +   +V AL G   Q ER   L   +  +  V IATD+ ARGI +  L +VI+ +L  
Sbjct: 258 LLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVLIATDLLARGIHIEQLPVVINFDLPP 317

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQN----------MQRRAERLFREANVSVVWEPAP 373
           +P   +HR GRT RAG+ G+++ ++  N          + +R   L   A+  V  +PA 
Sbjct: 318 SPAVYIHRVGRTARAGQTGLALSLVCHNENAILDAIRQLTQRPLVLQTLADFPVTDQPAT 377

Query: 374 SVEAIRERDAQ 384
           ++   + RD Q
Sbjct: 378 TMPKRQPRDKQ 388


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/353 (37%), Positives = 188/353 (53%), Gaps = 20/353 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   +    +   
Sbjct: 17  IARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLHRIATGVEDRP 76

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P AL + PTREL +QV  +L    ++L A       V I GG     +   L+ GA
Sbjct: 77  LNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYEPQIEALRAGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---RRM 182
            +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  +P     R+ 
Sbjct: 137 DVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILALAPSADAGRQS 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------YRAVLVALSDRDNAI 235
           ++FSAT+   I TLA+ +       +I +E+ Q S +        YRA  +   D+   +
Sbjct: 197 MLFSATMPDPIITLARTFMNRPT--HIRAEDPQASSVHDSTEQFVYRAHAL---DKIELV 251

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    ++F  T+ +  + +  LAE  F V A+ G+L Q  R  AL   R G+ 
Sbjct: 252 SRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSFRSGQI 311

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 312 NVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLV 364


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 187/350 (53%), Gaps = 5/350 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+ +G+ + T+VQ       LR +D++  A+TGSGKT+AF +  A   +A  
Sbjct: 119 VPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAF-MVPALAHIAMQ 177

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ + +APTRELA Q+ +E + +     +      GG     +   L+NG H
Sbjct: 178 EPLRTGDGPMVVVLAPTRELAQQIEQETKKVLPHD-LRCGCVYGGAPKGPQLGILRNGVH 236

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +N   +  +VLDEAD MLD+GF   +  I       R+ LMFS
Sbjct: 237 ILVATPGRLIDFLEIKRVNFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFS 296

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA  +QKD +R+N+ S E   + D+    +L     +   +  +L  H  +
Sbjct: 297 ATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMEELKKLLANHRNQ 356

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC-IATDVA 304
             ++FC T+ +       L    +  +A+ G+  Q++R   L+  R    R+C +ATDVA
Sbjct: 357 RVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKD-PRLCLVATDVA 415

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           ARG+D+ +LE VI+ +     ++ +HR GRTGRAG KG +  +I +  Q+
Sbjct: 416 ARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQQ 465


>gi|327485295|gb|AEA79701.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3894-4]
          Length = 448

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 74  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 194 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 314 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 356

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 357 SFKRVEAFLQQEIQ 370


>gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 446

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 192/347 (55%), Gaps = 16/347 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L   GY   T +QE  +   +  +D+L S++TGSGKT A+       LL   +R     
Sbjct: 15  SLEHFGYDTPTQIQECAIPEAIAGRDLLASSKTGSGKTFAY-------LLPAINRVYQRK 67

Query: 74  A-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           A     P  + + PTRELA QV  +L  L A + +  A+ +GG + + + + LQ   H V
Sbjct: 68  ALSRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKALQKDPHFV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSA 187
           VGTPGRL DH+  + L +   + ++LDEAD MLDLGF D +  I + +S ++R+ L FSA
Sbjct: 128 VGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQRQTLFFSA 187

Query: 188 TI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-K 245
           T+ +  ++ +A+   ++  RV +     QH DI     L    D   A++  L  +   K
Sbjct: 188 TLDNTDVSVIAEELLREPSRVAVGHGTDQHQDISQHVFLCDHLDHKEALLKHLVSNAELK 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+    R ++++    +   ALSG+LSQ  R++ ++    G+ ++ ++TD+A+
Sbjct: 248 QGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKFQILVSTDIAS 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQN 351
           RG+D+  +  V + ++ +  E  +HR+GRTGRAG KG    FV P++
Sbjct: 308 RGLDIAAVSHVFNFDVPNPAEEFVHRTGRTGRAGFKGDAYTFVGPKD 354


>gi|322496663|emb|CBZ31732.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 544

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 175/329 (53%), Gaps = 4/329 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 144 PDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 203

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 204 -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 262

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 263 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 322

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 323 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 382

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 383 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 442

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG 333
           ARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 443 ARGLDIKDLDVVVNYDMPLNIEDYVHRIG 471


>gi|145297702|ref|YP_001140543.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850474|gb|ABO88795.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 406

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 182/326 (55%), Gaps = 8/326 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIAP 82
           T +Q+  +   L  +D+L  AQTGSGKT+AFGL L         R  PAS+ +  L + P
Sbjct: 24  TRIQQLAIPVVLAGQDLLALAQTGSGKTLAFGLPLL-------QRLDPASSLVQGLVVVP 76

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA+QV   L+ +    G+ +    GGV+  R++ +L  G  ++V TPGRL D +  +
Sbjct: 77  TRELAMQVSAALQGMADALGLRILTLCGGVAQERQQAELALGPQLLVATPGRLRDLLTQQ 136

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L +  L+ +VLDEAD +L++GF  DI+++++  P +R+ L+FSAT+   +   A +   
Sbjct: 137 VLGLDGLQQLVLDEADRLLEMGFWPDIQWLMNEMPAERQTLLFSATLPAELNAFAHSLLT 196

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           +  R+     N   ++I+ R  LV  S +  A++++L+       +VF S R       +
Sbjct: 197 EPTRIEANPLNSLVNEIEERLYLVNKSSKVPALISLLKEQAWPQVLVFISARDDADGVAR 256

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            LA     V AL GE  Q  R  AL   + G+  V +ATD+ ARGI +  L +VI+ +L 
Sbjct: 257 KLARAGIPVAALHGEKEQAVREQALDDFKAGKVLVLVATDLMARGIHVEALPVVINLDLP 316

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++    +HR GRT RAG +G+++ ++
Sbjct: 317 ASAPVYVHRIGRTARAGCEGLAISLV 342


>gi|255746112|ref|ZP_05420059.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|255735866|gb|EET91264.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 448

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 74  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 194 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 314 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 356

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 357 SFKRVEAFLQQEIQ 370


>gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 417

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 186/345 (53%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++ E L E  Y+  T +Q   +   L  KD +  A TGSGKT AF L +   +L + 
Sbjct: 16  IPTLV-ERLEELEYLQPTPIQSYAIPHVLEGKDFVGGANTGSGKTAAFSLPILQKILEQG 74

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           D   S  +    L + PTRELA QV   ++    + +  V      GGVSV+ +   L+ 
Sbjct: 75  DSNRSRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQMLSLRG 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G+ I+V TPGRL D +    + +  +K +VLDEAD ML LGF D++  IL   P+K++ L
Sbjct: 135 GSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILALLPEKKQTL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +TTLA++   D V V + S   + S +  R   V   ++   + ++++ H 
Sbjct: 195 LFSATFPEKVTTLAQHLLSDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKKHQ 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IATD+
Sbjct: 253 WRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATDI 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 313 AARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 455

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/322 (35%), Positives = 179/322 (55%), Gaps = 8/322 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   G+ + T +Q   + P L  KDV+ +A TG+GKT AF L L        DR +   
Sbjct: 18  ALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLI-------DRLAGKP 70

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA+Q+G ELE       V  AV IGGV + ++   L+    IV+ TPG
Sbjct: 71  GTRALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQKREIVIATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+      +  ++A+VLDEAD MLD+GF+  ++ IL   PK+R+ L+FSAT++  +
Sbjct: 131 RLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLLFSATMAGEV 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
              A+ + +D VRV +A      +  + +  L    ++   ++ +L   G  + ++F  T
Sbjct: 191 ADFARAHLRDPVRVEVARSGTTAARAEQQVFLADQHEKLPLLLTLLERDG-DSTLIFTRT 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K +     +V  +  + SQ +R  AL   +DG  RV +ATD+AARGID+ ++
Sbjct: 250 KRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYRVLVATDIAARGIDVAEI 309

Query: 314 ELVIHAELSSNPENLLHRSGRT 335
             V++ +L   PE+ +HR GRT
Sbjct: 310 GHVVNFDLPHVPEDYVHRVGRT 331


>gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis]
          Length = 796

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
            P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF   L L  T L 
Sbjct: 375 FPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLP 434

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 435 KIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRM 494

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 495 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 554

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 555 DNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAMVYIGSVGKPTER 614

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       + L +  F    L G  
Sbjct: 615 TEQIVHIMGEADKRRKLMEILHRGVEPPVIIFVNQKKGADVLARGLEKIGFNACTLHGGK 674

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 675 GQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 734

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 735 GKAGLAI 741


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 182/331 (54%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSPASAP 75
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+     T L E          
Sbjct: 46  GFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSIAILQSMDTTLRETQ-------- 97

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+
Sbjct: 98  -VLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRV 156

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  
Sbjct: 157 FDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILE 216

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+
Sbjct: 217 MTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 276

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV ARGID+  + 
Sbjct: 277 RKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWARGIDVQQVS 336

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 337 LVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367


>gi|171677330|ref|XP_001903616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936733|emb|CAP61391.1| unnamed protein product [Podospora anserina S mat+]
          Length = 652

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 28/360 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP---ASAP 75
            Y   T +Q A     L  +D +  A+TGSGKT+AF L     L   + + S    ++ P
Sbjct: 238 AYNAPTPIQAASWPFTLAGRDAIGIAETGSGKTMAFALPCVEKLSIHSKKASKDYRSTRP 297

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QNGAHIVVGTP 132
            A+ +APTRELA+Q    +  L ++ G+  AVCI G +   ++R L    +GA I+  TP
Sbjct: 298 RAVIVAPTRELAMQTHEAVSGLASQVGLT-AVCIYGGASKDDQRALLRKNSGADIITATP 356

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATIS 190
           GRL D +    +N+  +   VLDEAD MLD GF DDI+ IL   P K  R+ LMF+AT  
Sbjct: 357 GRLKDFLSDNTVNLGDVMFAVLDEADRMLDKGFEDDIKLILGGCPPKEERQTLMFTATWP 416

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD--------------IDYRAVLVALSDRDNAIV 236
            ++  LA+++  + V+V I +  R   D              I+ +  +V    ++  ++
Sbjct: 417 TSVRVLAESFMVNPVKVTIGNRTRAGEDGNSSGTVELQANSRIEQKVEVVDPRGKEQRLL 476

Query: 237 NILRYH---GAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +LR      AKN   +VFC  +    R  + L     +V ++ G+L Q +R+ +L+  +
Sbjct: 477 ELLREAQKGSAKNDRILVFCLYKKEAVRVEQFLERRGIRVASIHGDLRQDQRTKSLEAFK 536

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++ +  ++
Sbjct: 537 AGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGKAITLFTEH 596


>gi|332293260|ref|YP_004431869.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171346|gb|AEE20601.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 446

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 192/359 (53%), Gaps = 10/359 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I EAL      + T +Q+  +   L  +KDV+  AQTG+GKTVAFG+ L   +    DR 
Sbjct: 14  IQEALKSLEITSPTDIQQQAIPAMLTSKKDVIALAQTGTGKTVAFGVPLLQLI----DRT 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128
           +P +   A+ + PTREL  Q+   +  L A    V  AV  GGV V  +   L+  A I+
Sbjct: 70  NPTTQ--AVILVPTRELGQQIQSNIAALAAHLPEVRTAVFYGGVPVKDQIERLKEPAQII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + +NI+    +VLDEADEM+    +D ++ I+ + P  RR  + SAT
Sbjct: 128 VATPGRLIDLMERQAINITQANYLVLDEADEMVS-SLKDSLDTIVTAMPNNRRTFLLSAT 186

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +  AI  + +NY  K+ + V+          I +  V+V   ++ + +++ L     +  
Sbjct: 187 MPGAIKQIVQNYLSKNPIEVSAEMATLGSQKITHEYVVVEPIEKLDVLMHFLNSRIGQRG 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC T+A+V++  K LA + F   A+ G LSQ  R   +   R+G   + +ATD+AARG
Sbjct: 247 IIFCKTKAAVNKLAKNLAINKFSSGAIHGSLSQPIRDRMMGQFREGHIDILVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           ID+ ++E V++  L    +  +HRSGRT RAG  G ++ ++ +   +       E  +S
Sbjct: 307 IDVKEIEYVVNYHLPEFYDMYVHRSGRTARAGATGYALTILQEEEVKEIPEFEHELGIS 365


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 194/367 (52%), Gaps = 9/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 106 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILP- 164

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A+  +    R S    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 165 ATVHINHQPRLSRGDGPIVLILAPTRELAQQI-QTVARDFGSSSCIRNTCIFGGSPKGPQ 223

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 224 ARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 283

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S     + +I     +    +++  + 
Sbjct: 284 PDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLS 343

Query: 237 NILRYHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +LR  G +     I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G
Sbjct: 344 QLLREIGTERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRNG 403

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  
Sbjct: 404 KTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 463

Query: 354 RRAERLF 360
           R+A+ L 
Sbjct: 464 RQAKELI 470


>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
 gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
          Length = 581

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/412 (30%), Positives = 197/412 (47%), Gaps = 35/412 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G  + T +Q   L   L  +D++  A TGSGKT+AF L L    L E 
Sbjct: 150 LPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIMLALKEE 209

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
           +R        P+ L + P+RELA Q    +E   +         +   +CIGG  +  + 
Sbjct: 210 ERSRLKGGEGPVGLILCPSRELAKQTFDVIEEFVSMVNSSRCCHLRAMLCIGGTGMRSQL 269

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+   K + LDEAD + D GF DDI  ++D    
Sbjct: 270 EAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKVMDHLKF 329

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A+      V VN+A       D+  +   V        ++  
Sbjct: 330 QRQTLLFSATMPRKIQEFARGALVKPVVVNVARAGAASLDVVQQVEFVKQEAEMVYLLEC 389

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC ++  V    + L     +VV++ G   Q+ER +A+   + GR  V 
Sbjct: 390 LQ-QTPPPVLIFCESKGEVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKFKQGRKDVL 448

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-- 356
           +ATDVA++G+D P ++ VI+ ++ S  EN +HR GRTGR G+ G++   I          
Sbjct: 449 VATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINSRQSESTLL 508

Query: 357 --ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
             + L REA   V                      P+FL+S++     MV+V
Sbjct: 509 DLKYLLREAKQKV----------------------PVFLESLEDPSTSMVEV 538


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 221 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGGQFS 280

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 281 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 340

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 341 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQT 400

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 401 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTH 460

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA   ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 461 GAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATA 520

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 521 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 563


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 98  FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 158 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 215

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 216 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 275

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 276 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 335

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 336 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 394

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 395 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 454

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 455 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 493


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 187/352 (53%), Gaps = 18/352 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----------LAENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +           + EN R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + +++IL   G
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATG 437

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           + +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 438 SDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 497

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++  F   +NM 
Sbjct: 498 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549


>gi|312221996|emb|CBY01936.1| hypothetical protein [Leptosphaeria maculans]
          Length = 602

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 188/342 (54%), Gaps = 26/342 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLLAENDRFSPASAPL 76
           +   T +Q A     L  +D++  A+TGSGKT+AFG+      S+L  E  +        
Sbjct: 208 FTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISSLPKEKRK-----GIK 262

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTP 132
           A+ ++PTRELAVQ+  +L  L    G+ V    GGV      +D Q      AHIVV TP
Sbjct: 263 AVIVSPTRELAVQIYDQLVALANPAGLEVVCVYGGVP-----KDPQVAACRKAHIVVATP 317

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D I     ++S  + VVLDEAD MLD GF + I  I+  +PKKR+ LMF+AT  P+
Sbjct: 318 GRLNDLIGDGSADLSKAEYVVLDEADRMLDKGFEEPIRQIVSQTPKKRQTLMFTATWPPS 377

Query: 193 ITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA 247
           +  LA  +    V++    N++ E R +  I     ++    ++  ++ +L+ Y   KN 
Sbjct: 378 VRELASTFMNSPVKITIGDNVSGELRANVRIKQVVEVIDPHAKEQRLIQLLKQYQSGKNK 437

Query: 248 ----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VFC  +    R    +    F+V  + G+L+Q++RS +L   ++G   + +ATDV
Sbjct: 438 DDRILVFCLYKKEAVRIENFIRMKGFRVGGIHGDLTQEKRSASLAAFKEGHVPLLVATDV 497

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P +++VI+       E+ +HR GRTGRAG++G+++
Sbjct: 498 AARGLDIPAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAI 539


>gi|261213074|ref|ZP_05927358.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838139|gb|EEX64816.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 448

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  + A       +  GG + + + + L  G   +V TPGR
Sbjct: 74  PRGVILVPTRELAKQVYGELRSMLAGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 194 VNDMAMEMLNEPKRIAIGIGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNKSNLKAVALSGNLNQTQRNTIMSQFERTVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 W+
Sbjct: 314 SVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKD-----------------WD 356

Query: 371 PAPSVEAIRERDAQ 384
               VEA  ++D Q
Sbjct: 357 SFKRVEAFLQQDIQ 370


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 197/357 (55%), Gaps = 19/357 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + ++I  ++S  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +    
Sbjct: 230 LTEIIKNSISLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQIYESG 289

Query: 67  DRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            R  P ++       PL L +APTRELA Q+  E      ++ +  AV  GG ++  + R
Sbjct: 290 PRPPPINSSGKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNIVDQMR 349

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSS 176
           +L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD+GF   I  I+  D+ 
Sbjct: 350 ELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRYLVLDEADRMLDMGFEPQIRRIVQEDTM 408

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   D+ + 
Sbjct: 409 PPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEHDKRSY 468

Query: 235 IVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++++L+     +       +VF  T+       + L +  + V ++ G+ +Q+ER +AL+
Sbjct: 469 LLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQREREDALR 528

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  G++ 
Sbjct: 529 RFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLAT 585


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 193/341 (56%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL    
Sbjct: 10  PELV-KALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLNSGK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G  I
Sbjct: 69  KASRGTAR-GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+   ++SP+   ++M
Sbjct: 128 LVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   S + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTASTVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++GRARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G ++
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAI 345


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 187/362 (51%), Gaps = 18/362 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          P +A         
Sbjct: 216 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSTVPPNAAGGFGRQRK 275

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 276 AYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 335

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++       + R+ LMFSAT
Sbjct: 336 GRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVQNRQTLMFSAT 395

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD + +++        +I  +   V   D+ + +++IL  HGA   +
Sbjct: 396 FPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHGAGLTL 455

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+  R+GR  + +AT VAARG+
Sbjct: 456 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGL 515

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+P++  V++ +L ++ ++ +HR GRTGRAG  G S     +  +   R    L +EAN 
Sbjct: 516 DIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGHSTAFFNRGNRGVVRELLELLKEANQ 575

Query: 366 SV 367
            V
Sbjct: 576 EV 577


>gi|297563397|ref|YP_003682371.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847845|gb|ADH69865.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 462

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/368 (33%), Positives = 193/368 (52%), Gaps = 15/368 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  +   L+ +G    + +Q A L   L  +DVL  ++TGSGKT+AFGLAL + 
Sbjct: 54  FEALDMPAPLKRTLTRQGLTVPSEIQAATLPNSLAGRDVLGRSRTGSGKTLAFGLALLAQ 113

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + R +    PLA+ +APTRELA QV   L       GV     +GG+ + R+ R L
Sbjct: 114 L---DGRKAEPRRPLAVVLAPTRELAQQVADALAPYARSVGVHATTVVGGMPISRQSRAL 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D +      +  ++  VLDEAD+M D+GF   +  IL   P   R
Sbjct: 171 RQGVELVVATPGRLRDLMERGDCVLDQVEVTVLDEADQMTDMGFMPQVTAILQQVPADGR 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   + TL + +  D V  ++       S +++  + V+ +D+ + +  I   
Sbjct: 231 RMLFSATLDRNVDTLVRRFLNDPVVHSVDLSEGAVSTMEHHVMHVSHADKQDVVTRIAAR 290

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMRDGRARV 297
            G    I+F  T+ +V R    +AEHL         L G  SQ +R+  L   + G    
Sbjct: 291 DG--RVIMFLDTKRAVDR----MAEHLLANGVLAAPLHGGRSQPQRTRTLDQFKRGAVTA 344

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT+VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   
Sbjct: 345 LVATNVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGEAGSVVTLVLPSQRRDMT 404

Query: 358 RLFREANV 365
           RL   A +
Sbjct: 405 RLMSRARI 412


>gi|147671861|ref|YP_001214917.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314244|gb|ABQ18784.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227014692|gb|ACP10901.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 452

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 178/339 (52%), Gaps = 4/339 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +AL E  Y   T +QE  +   L+ KD+   AQTG+GKT AF L +   L  + 
Sbjct: 9   LPHLL-DALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPILQHL--DP 65

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           D       P+  L +APTRELA Q+    +     + +   V  GGV+ +++   L  G 
Sbjct: 66  DGQVKGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVNQLNAGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +S +   VLDEAD MLD+GF  DI+ IL   PK ++ + F
Sbjct: 126 DILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKNKQNIFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATISP I  LA     D V V +   +     ++     V  +D+ N +  +++     
Sbjct: 186 SATISPTIMELAGTILFDPVNVRVTPVSSTAEIVEQFVYYVEKADKRNFLKQLIKTENIS 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVF  T+    R  + L +   +  A+ G+ SQ  R  AL   ++      IATD+A+
Sbjct: 246 HAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSFLIATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           RGID+  LE VI+ E+    E  +HR GRTGRAG  G++
Sbjct: 306 RGIDIDLLEYVINFEIPEVAETYVHRIGRTGRAGASGIA 344


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 219 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGGQFS 278

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 279 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 338

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 339 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 399 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTH 458

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA   ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 459 GAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATA 518

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 519 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 561


>gi|25028142|ref|NP_738196.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259507199|ref|ZP_05750099.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493426|dbj|BAC18396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259165214|gb|EEW49768.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
          Length = 460

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/396 (33%), Positives = 194/396 (48%), Gaps = 9/396 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I + L + G  +   +Q A +   L   DVL    TGSGKT  FGL + + L A 
Sbjct: 8   NLPDPIVKELRKEGITDAFPIQAAAIPDALAGLDVLGRGPTGSGKTFTFGLPMLARLAAS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P  L + PTRELA QV   LE   A  G+     +GGV+++R    L +  
Sbjct: 68  G--ASRPGQPRGLILVPTRELAAQVRERLEGPAAAMGLRTLEVVGGVNINRNITALASPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D +  K L+++ ++   LDEAD M D+GF   +  ++D +P K + L+F
Sbjct: 126 DVLVATPGRAQDLVNQKKLSLAQVEITALDEADHMADMGFLPQVRRLMDLTPAKGQRLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +T L   Y  + V  + A      + + +  +LV   D    +V  +     K
Sbjct: 186 SATLDGDVTKLVDRYMHNPVTHSTAPVAAAVNTMTHYRLLVGGRDSRALVVERIAAREGK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K L       V + G+  Q  R+NAL    DG   V +ATD+AA
Sbjct: 246 T-IMFMRTKHGVDRQVKKLRRVGINAVGIHGDKGQNTRTNALAGFTDGSIPVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++     +    LFR+A V
Sbjct: 305 RGIDVDDISLVVHVDPPAEHKAYLHRAGRTARAGTTGTVVTLVMDEQVKEVRDLFRKAGV 364

Query: 366 SV----VWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
                 V E +P  E  R   A+R    PL L   Q
Sbjct: 365 EAAEVEVHENSP--ELARITGARRPSGTPLALPGQQ 398


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 218 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGGQFS 277

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 278 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 337

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 338 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQT 397

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 398 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTH 457

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA   ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 458 GAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATA 517

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 518 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 560


>gi|254387768|ref|ZP_05003006.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326446864|ref|ZP_08221598.1| DEAD-box RNA-helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197701493|gb|EDY47305.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 17/377 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
            +P  +   L+  G  +   +Q A L   L  +D+L  A+TGSGKT+AFGLAL    + L
Sbjct: 46  GLPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLARTAGL 105

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            AE  R      PLAL + PTRELA QV   L       G+  A  +GG++++R+   L+
Sbjct: 106 RAEAKR------PLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALR 159

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +   LD  P   + 
Sbjct: 160 AGAEVVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQR 219

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +  L ++Y  + V   +       + +++  + V  +D+      I    
Sbjct: 220 LLFSATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADKYATATEIAARD 279

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+  V +FT+ L     Q  AL    SQ +R++ L   +DG   V +AT+
Sbjct: 280 G--RVLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVATN 337

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+  +
Sbjct: 338 VAARGIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRMMSD 397

Query: 363 ANVSVVWEPAPSVEAIR 379
           A +       P+V  +R
Sbjct: 398 AGIR------PTVTQVR 408


>gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
 gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
          Length = 419

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 184/349 (52%), Gaps = 3/349 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T VQ   +   L  +DVL SA TG+GKT AF L +   LL +  R  P  
Sbjct: 16  AIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPMIQHLL-DFPRKKPGP 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+Q+      L   T + +    GG+S       L     IVV TPG
Sbjct: 75  ARV-LILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHAELLGKTQDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL +++  +  +   ++ ++LDEAD MLD+GF   ++ I      +R+ L+FSAT+    
Sbjct: 134 RLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVDRINHECRWRRQSLLFSATLEGKG 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +   ++   K+ V VN A   R+   I    +         A++  +  H A+ +IVF  
Sbjct: 194 VREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMGHKLALLEQILKHQAERSIVFVK 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++     LA    +   + GE++Q  R+NA+   RDG   + IATDVAARGIDLPD
Sbjct: 254 TRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNILIATDVAARGIDLPD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  VI+ ++    +  LHR GRT RAG+KG+++ ++  + Q   ER+ R
Sbjct: 314 ISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIERVSR 362


>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 497

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 184/342 (53%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +A+ + GY   T++Q   +   L  KD++  AQTG+GKT +F L +   + A   
Sbjct: 45  PELL-KAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMIDVMAAGRR 103

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R   A  P +L + PTRELA QV    E   A   + +A+ IGGV +  + + L  G  +
Sbjct: 104 R---ALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKTLDEGVDV 160

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ TPGRL D   RGK L ++  + +V+DEAD MLD+GF  DIEFI D  P+ R+ ++FS
Sbjct: 161 LIATPGRLMDLFERGKIL-LNGCELLVIDEADRMLDMGFIPDIEFICDKLPETRQTMLFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK +  +  R+        + DI    V V    + + +  +L     + 
Sbjct: 220 ATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLANDQVET 279

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F + + +V    K L    F    + G++ Q  R   L   + G   + +A+DVAAR
Sbjct: 280 AIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVASDVAAR 339

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  +  V + +   +P++ +HR GRTGRAG KG +  ++
Sbjct: 340 GLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLV 381


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 22/377 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+A     
Sbjct: 202 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQFG 261

Query: 75  ------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++
Sbjct: 262 RQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLL 321

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLM 184
           V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ LM
Sbjct: 322 VATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVADRQTLM 381

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H  
Sbjct: 382 FSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDKRSVLLDILHTHAG 441

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+      +  L    F   ++ G+ +Q+ER  AL+  R+GR  + +AT VA
Sbjct: 442 GLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFRNGRCPILVATAVA 501

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361
           ARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++        + + R    L +
Sbjct: 502 ARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMELLK 561

Query: 362 EANVSVVWEPAPSVEAI 378
           EAN  V     P +EAI
Sbjct: 562 EANQEV----PPFLEAI 574


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 186/350 (53%), Gaps = 6/350 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   TS+Q   L   L  +D++  A+TGSGKT AF L +   ++ +        
Sbjct: 238 AIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEE 296

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ +  APTRELA Q+  E +      G+ V+   GG+S   + ++L+ G  IVV TPG
Sbjct: 297 GPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKELKAGCDIVVATPG 356

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ K LN+S    +VLDEAD M DLGF   I  I+      R+ L+FSAT+   +
Sbjct: 357 RLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 416

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250
             LA+    D +RV +      + DI  + V V  SD +       +  G     + +VF
Sbjct: 417 EKLAREILSDPIRVTVGEVGMANEDI-TQVVQVIPSDAEKLPWLFEKLPGMIDDGDVLVF 475

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S +A+V      LA+  F+V AL G+  Q  R   LQ  + G   V IATDVAARG+D+
Sbjct: 476 ASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 535

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
             L+ V++ +++ + +  +HR GRTGRAG K G +  +I Q   R A  L
Sbjct: 536 KSLKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARFAGEL 585


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 200/370 (54%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 88  NFPQYVLDVLIDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAMVHINH 146

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K+  + + CI GG     + RDL+ G
Sbjct: 147 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKSSRLKSTCIYGGAPKGPQIRDLERG 205

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 206 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 265

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D V++NI + E   + +I     +   S++D+ ++ ++    
Sbjct: 266 WSATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEEIM 325

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQQER   L   R G+A + IA
Sbjct: 326 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIA 385

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 386 TDVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELV 445

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 446 KVLEEANQTI 455


>gi|296141104|ref|YP_003648347.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296029238|gb|ADG80008.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 476

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 192/395 (48%), Gaps = 16/395 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + +AL          +Q   L   L  +DVL   +TGSGKT+AF + L   +   
Sbjct: 10  GVPAGVVDALVAMDRPTPFPIQADTLPDTLAGRDVLGRGKTGSGKTLAFAIPLVVAVDEA 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA Q+   +E L    G+ V    GGV   R+ + L  G 
Sbjct: 70  RGSRRRPGRPVGLVLAPTRELATQITATVEPLAKALGLTVTTIFGGVKQSRQEQALAAGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +R + +++S +   VLDEAD M DLGF   +  IL ++P   + ++F
Sbjct: 130 DIVVACPGRLEDLMRQRIVDLSDVAVTVLDEADHMADLGFLPVVTRILAATPSDGQRMLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  + V  ++  EN   +D+ +    V+  D  + +V +L   G  
Sbjct: 190 SATLDNGVDKLVRKFLSEPVMHSVDPENSPVADMTHHVFEVSGKDDKSELVRVL-ASGMG 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    +  K L         L G LSQ +R   L+    G ARV +ATD+AA
Sbjct: 249 RRILFTRTKHQAKKLAKQLTAQGIPARDLHGNLSQPQRDRNLEAFSTGAARVLVATDIAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + D+ELV+H +  +  +  LHRSGRT RAG  G  V V+    +R    L ++A +
Sbjct: 309 RGVHVDDIELVVHVDPPAEHKAYLHRSGRTARAGSAGTVVTVMLTEQKRDTVALLKKAAI 368

Query: 366 S---------------VVWEPAPSVEAIRERDAQR 385
           S               +V  PAP V+   E   Q+
Sbjct: 369 SARPVAVTATAPVVTELVGAPAPFVKPAPEPAPQQ 403


>gi|255530101|ref|YP_003090473.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343085|gb|ACU02411.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 418

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 194/358 (54%), Gaps = 10/358 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++ E L   G+ N T +Q+  +   L +KD++  AQTG+GKT A+ L + +
Sbjct: 3   FKDFNFNPELL-EGLLAMGFRNATPIQQQAIPLILNKKDLIACAQTGTGKTGAYLLPIMN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRE 117
            ++   +R +       L +APTRELA Q+  ++E L   T +      GG   ++  ++
Sbjct: 62  MIVETENRHNNT-----LILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R ++ G  +++ TPGRL  H+    L +  L+ +VLDEAD MLD+GF DDI  I+   P
Sbjct: 117 KRSMREGVDLIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ +MFSAT+ P I  LA    K   ++NIA  ++    I  +   V    +   + +
Sbjct: 177 QVRQTVMFSATMPPKIRKLAATLLKHPEQINIAL-SKPAEGILQQIYFVHDEQKVPLLTD 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    K+ I+F ST+  V    KV      +  A   +L Q ER + L   ++ +  +
Sbjct: 236 VLKTGEYKSIIIFASTKEKVKNLGKVFRTLGLKAEAFHSDLGQSERESILLKFKNKQLPI 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            I TDV +RGID+  ++LV++ ++  + E+ +HR GRT RA  KG ++ ++    +R+
Sbjct: 296 LIGTDVLSRGIDVEGIDLVVNFDVPHDAEDYVHRIGRTARAATKGTAITLVNSRDKRK 353


>gi|320170440|gb|EFW47339.1| DEAD box RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 199/369 (53%), Gaps = 23/369 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS---A 74
           G+ + T +Q       L  KD++  A+TGSGKT+AF  AL S + L + +    +S    
Sbjct: 254 GFASPTPIQSQCWPISLAGKDLIGIAKTGSGKTLAF--ALPSIIHLRDQEALGKSSNQRG 311

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCI-GGVSVHRERRDLQNGAHI 127
           P+ L + PTRELA+Q       + + TG       +  VCI GGV   ++   L++G H+
Sbjct: 312 PVVLVLCPTRELAMQTAEVYANVASHTGKSSSSVALKTVCIFGGVPKKQQLDQLKSGIHV 371

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D I    +++  +  V+LDEAD MLDLGF  DI  IL    K R+ LMFSA
Sbjct: 372 IVATPGRLRDFIDSGDISLQRVSCVILDEADRMLDLGFEKDIRDILGRVTKDRQTLMFSA 431

Query: 188 TISPAITTLAKNY-QKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGA 244
           T   AI  + + +   D VRV I  +    +D    +  VL   + +D  ++++L+ H +
Sbjct: 432 TWPSAIEAIGREFLAPDTVRVTIGGDELVANDAVTQHVEVLEPFA-KDARLLDLLQKHHS 490

Query: 245 --KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             KN  I+F   +    R  ++L    ++ +A+ G+ SQ +R+ ALQ  + G   + IAT
Sbjct: 491 SRKNKVIIFVLYKQEAPRVEQMLLRKGWKSIAIHGDRSQADRTAALQAFKTGEVPLLIAT 550

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+P++E VI+       E+ +HR GRTGRAG+ G +      N +  +  L  
Sbjct: 551 DVAARGLDIPNVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAFTFFTVNDKSHSGELVN 610

Query: 360 -FREANVSV 367
             RE N +V
Sbjct: 611 VLRETNQAV 619


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 194/367 (52%), Gaps = 9/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 107 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILP- 165

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A+  +    R S    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 166 ATVHINHQPRLSRGDGPIVLILAPTRELAQQI-QTVARDFGSSSCIRNTCIFGGSPKGPQ 224

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 225 ARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 284

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S     + +I     +    +++  + 
Sbjct: 285 PDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEICQEHEKETKLS 344

Query: 237 NILRYHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +LR  G +     I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G
Sbjct: 345 QLLREIGTERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLSEFRNG 404

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  
Sbjct: 405 KTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 464

Query: 354 RRAERLF 360
           R+A+ L 
Sbjct: 465 RQAKELI 471


>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 493

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 191/370 (51%), Gaps = 8/370 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EA  + GY   T +Q   +   L+ +D++  A+TGSGKT +F L +   L+ +   F 
Sbjct: 82  LCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQALMEKPQSF- 140

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L +APTRELA Q+    E L A   V     +GG+ +  +   L    HI+V 
Sbjct: 141 -----FGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKPHIIVA 195

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  LK +V+DEAD +LD+ F   ++ IL   P++RR  +FSAT+
Sbjct: 196 TPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFLFSATL 255

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAI 248
           S  + +L +    +  RV+I+S      +   +  L+     +D  +V +L     ++ I
Sbjct: 256 SSKVESLQRASLSNPARVSISSSKYATVETLQQTYLLRPYKHKDIYLVYLLHEFIGQSVI 315

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T     R   +L    F  + L G++SQ  R  AL   R     + +ATDVAARG+
Sbjct: 316 IFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVATDVAARGL 375

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P ++ V++ +L ++ +  +HR GRT RAG+ G ++  + Q      +R+       + 
Sbjct: 376 DIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQRIEAAMGKELA 435

Query: 369 WEPAPSVEAI 378
             PAP  EA+
Sbjct: 436 EYPAPKDEAM 445


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 182/342 (53%), Gaps = 13/342 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   ++  GY   T +Q   +   +   D++  AQTG+GKT AF L +   L+
Sbjct: 6   FSFHPKVVA-GINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPILHRLM 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P     AL IAPTRELA Q+   +  L  +T +      GGV+V+ +   L+N
Sbjct: 65  Q-----GPRKQVRALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKLKN 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV  PGRL DHI    +++++L+ +VLDEAD+M D+GF  DI  IL   P +R+ +
Sbjct: 120 GVEIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQRQTM 179

Query: 184 MFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+   I  LA+   +D   V   N+A      + + +    VA   +   ++ +L+
Sbjct: 180 LFSATMPAEIRGLAREILRDPATVQVDNVAPA----ATVSHALYPVAQHLKTPLLMQLLK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + ++F  T+    R  + L +  +   +L G LSQ  R  A+   R+G  ++ +A
Sbjct: 236 HTDTDSVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           TD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNG 337


>gi|146308580|ref|YP_001189045.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina ymp]
 gi|145576781|gb|ABP86313.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 482

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 189/348 (54%), Gaps = 9/348 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ + LL
Sbjct: 99  FKLAPELM-HAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLL 157

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +R+     P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ + 
Sbjct: 158 QTPPPKERY--MGEPRALIIAPTRELVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQ 215

Query: 121 LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++    I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K
Sbjct: 216 LESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMK 275

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N
Sbjct: 276 GDRQTLLFSATFTEDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASSDKYKLLYN 335

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     +VF + +  V R  + L         +SG++ Q +R   L+  R G  RV
Sbjct: 336 LVTQNAWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGHIRV 395

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +ATDVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+
Sbjct: 396 LVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGTSI 443


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 190/345 (55%), Gaps = 16/345 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  KDV+V AQ+G+GKT  + +++   +   N          AL
Sbjct: 25  GFEKPSTIQQKAIFPCISGKDVIVQAQSGTGKTATYAISVLQQIDTSNSNIQ------AL 78

Query: 79  AIAPTRELAVQVGRELE----WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + PTRELA+Q  R L+    +LY        VCIGG S+ +E ++    A +++GTPGR
Sbjct: 79  ILTPTRELALQAQRVLQTIGNYLY---NFKCQVCIGGTSI-KESQETLKKAQVLIGTPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +  K ++   +K VV+DEADEML   F D I+ I +      ++++ SAT+   + 
Sbjct: 135 MIDLLTRKSIDTKAIKIVVIDEADEMLIDNFLDKIQDIFEFFESHVQVILLSATVPSRVI 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
             ++ + +D V++ + +       I    + V  +D +   + ++  +      ++FC+T
Sbjct: 195 NTSQVFMRDPVKILVKNAELTLEGIRQYYINVKKNDFKAETLFDLYDHLSLTQTLIFCNT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V    + L    F   ++ G++SQQER   ++  RDG+ R+ ++T++ ARGID+  +
Sbjct: 255 RRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFRDGKTRILLSTNLLARGIDVQQI 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
            LVI+ +L  N EN +HR GR+GR GRKG+++ F+    + + AE
Sbjct: 315 SLVINYDLPHNRENYIHRIGRSGRFGRKGIAINFITEDELPKLAE 359


>gi|110639488|ref|YP_679697.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282169|gb|ABG60355.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 188/341 (55%), Gaps = 19/341 (5%)

Query: 13  EALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++LSE    + + +Q+     ILN     K+V+  AQTG+GKT AFGL +         +
Sbjct: 14  QSLSENNISSPSEIQQKAIPVILNST---KNVVGVAQTGTGKTAAFGLPVLQ-------Q 63

Query: 69  FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGA 125
            +P+      L + PTREL  QV ++L +++++  V +      GG  +  + + L+   
Sbjct: 64  INPSLQQTQVLVLVPTRELGQQVAKDL-FVFSRYIVRIHTEAVYGGKKIEEQIKKLETPK 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D I  K +N+S+LK ++LDEADEML++GF  DI+ I+  +    R L+F
Sbjct: 123 HILVATPGRLLDLIARKAVNLSNLKYLILDEADEMLNMGFLPDIDKIMKIAKPTARKLLF 182

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           ++T+   +  + + Y   D   + I  +   + +I+++ +      +   +   L  H  
Sbjct: 183 TSTLGSELKLIIREYLGTDIEEIRIKPQEYVNRNIEHQYLAYQYGYKLEYLKAFLLKHSN 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+A+     + LA     V +L G+L+Q ER+  +   +D R  V IATD+A
Sbjct: 243 ERGIIFCRTQAAAKLLGQQLAGFDIVVGSLYGDLNQYERTKVMHAFKDKRIEVLIATDIA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ DL  VIH  L  N    ++RSGRT RAG+KG S+
Sbjct: 303 ARGIDVSDLNYVIHYHLPDNEAQYVNRSGRTARAGKKGKSI 343


>gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 192/350 (54%), Gaps = 6/350 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L   LL  
Sbjct: 10  NLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLLHKLLNT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +     A + + + PTRELA QV    E     T +  A+  GG S+  + + L+  A
Sbjct: 70  PKKDEQGLARVVI-LTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQIKALKT-A 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I  IL   P  R+ L+F
Sbjct: 128 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV-NILRYHG 243
           SAT   ++  L+K   K+   + +  + R  + ++   V+ A+  DR   +V +++    
Sbjct: 188 SATFDDSVFELSKKLLKNPELIEV--DKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +ATDV
Sbjct: 246 WRRVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           AARG+D+  L  VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q
Sbjct: 306 AARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQ 355


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 200/372 (53%), Gaps = 14/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++GY   T++Q       +  KD++  AQTGSGKT+A+ L  A   +   
Sbjct: 120 FPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILP-AIVHINNQ 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +    P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 179 PSIARGDGPIALVLAPTRELAQQI-QQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGV 237

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 238 EICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 297

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           SAT    +  LA+++ ++ V++NI S +   + +I     +    +++  + N+L+  G 
Sbjct: 298 SATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLLQEIGN 357

Query: 244 ----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R+G++ + I
Sbjct: 358 NGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILI 417

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358
           ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+   G S  F  P N  R+A+ 
Sbjct: 418 ATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNF-RQAKD 476

Query: 359 L---FREANVSV 367
           L    +EAN ++
Sbjct: 477 LVSVLKEANQAI 488


>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
 gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
          Length = 527

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/388 (34%), Positives = 191/388 (49%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML   F + +  I    PK R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLSGDFDESLAIIERCLPKTRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYHGA 244
               +++ K++    IAS   E  Q SD+      D R +L A  DRD  ++  LR +  
Sbjct: 192 ----RDFMKESSIFPIASNCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|154332316|ref|XP_001562532.1| ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 507

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 4/329 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 153 PDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 212

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 213 -LQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQQRSLRAGVH 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 272 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 332 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKLEEILRQVGPQ 391

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 392 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 451

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG 333
           ARG+D+ +L++V++ ++  N E+ +HR G
Sbjct: 452 ARGLDIKNLDVVVNYDMPLNIEDYVHRIG 480


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 189/355 (53%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVECQ-AL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDI 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 174 VRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITR 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + + + + ++        +++F +TR  V
Sbjct: 234 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 294 DWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L + PEN  HR GR+GR GRKG+++  + +  +R    + +  NV +   PA
Sbjct: 354 NYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPA 408


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 186/344 (54%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDIDKRSFLLDLLNAT 438

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT
Sbjct: 439 GKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 498

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 499 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 542


>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 179/335 (53%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E GY  +T +Q   + P  R +D+L +AQTG+GKT AF L +   L A+  +  
Sbjct: 12  IQSALDECGYSEMTPIQRQAIVPARRGRDILANAQTGTGKTAAFSLPVLQQL-ADKPKEL 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +    AL + PTRELA Q+   +       G+ +    GGV++  + + L+ GA +++ 
Sbjct: 71  ESGQVRALILTPTRELAQQLFDTIGRYNQHLGLRMVAVYGGVNLDTQMKKLRRGADLLIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ +HI    +N+   + VVLDEAD MLD+GF  D+  ILD +PK R+ L+FSAT+S
Sbjct: 131 TPGRMLEHINACNVNLGTTEFVVLDEADRMLDMGFVTDVMSILDVTPKSRQTLLFSATLS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            ++  L+        ++  A  N     I++    V    + +    +++       +VF
Sbjct: 191 DSVHKLSNKILTRPEKIKAARHNTIADTIEHVVYPVEEQRKADLFAELIKEENWFQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST+A  +     L     + V   G+ SQ  R  A+   + G+ +V +AT+VAARG+D+
Sbjct: 251 TSTKAQANELMMDLKYDGIEAVLCHGDKSQGARRRAVADFKAGKIQVLVATEVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             LE V++  L    E+ +HR GR GRAG  G ++
Sbjct: 311 QGLEQVVNYNLPYLAEDYVHRVGRAGRAGMAGKAI 345


>gi|255721753|ref|XP_002545811.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
 gi|240136300|gb|EER35853.1| hypothetical protein CTRG_00592 [Candida tropicalis MYA-3404]
          Length = 440

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 193/353 (54%), Gaps = 22/353 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL        TS+Q A +   L+  D +  A+TGSGKT+AF    A+ +L +     
Sbjct: 12  LSEALDAMKIYKPTSIQSACIPQILKGHDCIGGAKTGSGKTIAF----AAPMLTQWSE-D 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P      L + PTRELA+Q+  +   L +   + V+V +GG  + ++  +LQ   H V+ 
Sbjct: 67  PYGV-FGLVLTPTRELALQIAEQFTALGSNMNIKVSVIVGGEDIVKQALELQKKPHFVIA 125

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           TPGRL DHI   G      +  +K +VLDEAD +L   F  D++   D  P  +KR+ L+
Sbjct: 126 TPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLKRCFDVLPPSEKRQTLL 185

Query: 185 FSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLVALSDRD---NAI 235
           F+ATI+ A+  L +  Q +         V    +    S +    V V    ++   N+I
Sbjct: 186 FTATITDAVRALKEKPQTEGKPPVFMHEVETVDKVAIPSTLSISYVFVPSYVKEAYLNSI 245

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +N+ ++  A  A+VF +   +     + L +  F+V +L  E+ Q ER+N+L   + G A
Sbjct: 246 LNLEKFKDA-TAVVFVNRTITAEVLRRTLRKLDFRVASLHSEMPQAERTNSLHRFKAGAA 304

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R+ IATDVA+RG+D+P +ELV++ ++ ++P++ +HR GRT RAGRKG +V +I
Sbjct: 305 RILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAVSII 357


>gi|302545222|ref|ZP_07297564.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462840|gb|EFL25933.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 489

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 194/361 (53%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L+ +G      +Q A L   L  +DVL  AQTGSGKT+AFGLAL +    +
Sbjct: 12  DLPDGLAAELALQGITVPFPIQGATLPSALTGRDVLGRAQTGSGKTLAFGLALLARTAGQ 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L     +  +  A  +GG+S++R+   L++GA
Sbjct: 72  --RAEPRR-PLALVLVPTRELAQQVSDALAPYARRLRLRPATVVGGMSINRQANALRDGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P   + L+F
Sbjct: 129 EVVIATPGRLHDLIERGDCRLDQVRITVLDEADQMADMGFLPQVTRLLRQVPADGQRLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+ L + +  D    ++       + +++  + +A +D+ +    +    G  
Sbjct: 189 SATLDNQISRLVREFLTDPALHSVDDSAGAVTTMEHHVLHIADTDKRSVATRVAARDG-- 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T+ L  +  +  AL G  SQ +R+  L+  + G     +AT+VAA
Sbjct: 247 RVIMFLDTKHAVDRLTRHLLANGVRAAALHGGKSQPQRTKTLERFKTGDVTALVATNVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 307 RGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGGSGSVVTLVLPDQRREMTRLMTAAGI 366

Query: 366 S 366
           +
Sbjct: 367 T 367


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 184/335 (54%), Gaps = 7/335 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+ +     T+VQE  +   L+  ++LV AQTG+GKT+AF L +   +  +       
Sbjct: 16  EALTNQHITEPTAVQEQAVPAALKGHNLLVQAQTGTGKTLAFLLPIFQGIKKD------V 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL +APTREL+ Q+    +     TG+ +   IGG ++  + + L     +++GTP
Sbjct: 70  SMTQALIMAPTRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQKLHRRPQVIIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH R   L++S +  VV+DEAD+ML  GF  +++ ++  +PKKR++L FSATI   
Sbjct: 130 GRLLDHCRRNSLDLSGVHYVVVDEADQMLQSGFLSEVDELIGMTPKKRQLLFFSATIPDK 189

Query: 193 ITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           + +LAK +    + + +   E     +I+ R  +++   +   + ++L       A+VFC
Sbjct: 190 VRSLAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCDMLTEFNPYLAVVFC 249

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+    +    L    F V  L G++SQ  R+  ++     + ++ +A+D+AARGID+ 
Sbjct: 250 NTKDRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQILVASDIAARGIDIE 309

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
            +  V   ++  + +  +HR GRTGRAG  G+SV 
Sbjct: 310 GISHVFSYDVPGDTDYYIHRIGRTGRAGSSGLSVM 344


>gi|53804102|ref|YP_114024.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53757863|gb|AAU92154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 499

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 228/452 (50%), Gaps = 18/452 (3%)

Query: 80  IAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           +APTRELA+QV    +  YA+      +    GG S+  + R L+ G H++VGTPGR+ D
Sbjct: 2   LAPTRELALQVAEAFQ-SYARHLPDFHILPIYGGQSMDAQLRHLRRGVHVIVGTPGRVID 60

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R K LN+  L+ +VLDEADEML +GF +D+E+IL+ +P +R++ +FSAT+  AI  +A
Sbjct: 61  HLRRKSLNLDGLRTLVLDEADEMLRMGFIEDVEWILEHTPPERQIALFSATMPEAIRRVA 120

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K + +      I ++      I  R  L + + + +A+  IL        I+F  T+   
Sbjct: 121 KRHLRHPKEAKIEAKTATVEAITQRYWLGSGAHKLDALTRILEVEDFDAMIIFVRTKVLT 180

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    +   AL+G++SQ  R  A+  ++     + +ATDVAARG+D+  +  V+
Sbjct: 181 EELAEKLEARGYSAAALNGDMSQALREKAVDRLKKNTLDILVATDVAARGLDVERISHVV 240

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +     +     P+ + 
Sbjct: 241 NYDIPYDTESYVHRIGRTGRAGRKGQAILFVTPREKRMLSAIEKATRQRITEMRLPTHQD 300

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAGFLR-IHRAGLCA 430
           I ER  ++       + +++ ++ +    L+ +        P  IAA     + +     
Sbjct: 301 IAERRVEQFKAQ--IMTTLEEEDLEFFRRLVQQIGREQSLSPTDIAAALTYLVQKDRPLV 358

Query: 431 PEEI-----TPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           PEE      +P      R +FRD D+ A +     +D  +    + + VG    A A+ +
Sbjct: 359 PEEQPAPAESPAESREPRKKFRDRDAEAGEKKRKRKDREETGVLYRIGVGRNDGAAAKDI 418

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
           +  +   + I  + IG I++  D + V + AD
Sbjct: 419 VGAIANEADIPGRDIGHIKLYDDFSTVSLPAD 450


>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
 gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
          Length = 469

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/342 (35%), Positives = 178/342 (52%), Gaps = 8/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T++Q   +   L   DVL  +QTG+GKT AF L +   +  +         
Sbjct: 18  LEKIGFTTPTTIQAQAIPELLNGHDVLGMSQTGTGKTAAFSLPMLDRIDLDKRTVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV + +        + +    GG S+ R+ R L  GA IVVGTPGR
Sbjct: 74  --ALILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLYKGAQIVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L + +L  VVLDEADEML +GF DD++ IL  +P++R+   FSAT+   I 
Sbjct: 132 VIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQTPEERQTTCFSATMPRPIQ 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCST 253
            L   + K  V V +       + I+ R  +V     +  A+  IL     + +I+F  T
Sbjct: 192 ELVSKFLKSPVTVKVQQSKAAPARIEQRVYMVPRGCSKIRALHPILELEDPEASIIFVRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R + +  T  L      V    G+LSQ +R   L   R  + R  +ATD+AARG+D+  L
Sbjct: 252 RKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVVATDIAARGLDVDHL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
             VI+ +L    E+ +HR GRTGRAG+ G ++ +I Q  +RR
Sbjct: 312 THVINFDLPDQVESYIHRIGRTGRAGKTGTAITLI-QPFERR 352


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-A 72
           AL+E G     ++QE  L   L  +D++  A+TG GKT  FG+ L   +   +   +P  
Sbjct: 49  ALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLHRIATADSGTTPLD 108

Query: 73  SAPLALAIAPTRELAVQVGREL----EWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHI 127
             P AL I PTREL +QV  +L    ++L    G + V    GG     +   L+ G  +
Sbjct: 109 GTPRALVIVPTRELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPYDSQIAALREGVDV 168

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE IL   P KR+ ++FSA
Sbjct: 169 VVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLDLGFLPDIERILTMVPAKRQTMLFSA 228

Query: 188 TISPAITTLAKNY--QKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYH 242
           T+   I TLA+ +  +   +R     ++  H   +   YRA  +   D+   I  +L+  
Sbjct: 229 TMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHAL---DKAELIARVLQAE 285

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+ +  +    LAE  F V A+ G+L Q +R  AL   R G   V +ATD
Sbjct: 286 GRGATMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRKGVIDVLVATD 345

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V +I
Sbjct: 346 VAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLI 391


>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
 gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
          Length = 516

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 186/335 (55%), Gaps = 11/335 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-AL 78
           + N T +Q   +   L  +DV+  A+TGSGKT AF L +  +LL +         PL  L
Sbjct: 106 FKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQSLLEK-------PQPLFGL 158

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ ++++ L +   V  A  +GG+ +  +   L    HIVV TPGRL DH
Sbjct: 159 ILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDH 218

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTL 196
           +   KG ++ HLK +VLDEAD +LDL F   ++ IL   P++ R   +FSAT+S  +  L
Sbjct: 219 LENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPREGRHTYLFSATMSSKVENL 278

Query: 197 AKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +   ++ VRV+I+S + Q  S +  R   +    +D  ++++L  +     I+F  T  
Sbjct: 279 QRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDLYLIHLLNDNIGHPTIIFTRTVN 338

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              R   +L    F  + L G+LSQ  R  AL   +     + +ATDVAARG+D+P ++L
Sbjct: 339 ETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRDILVATDVAARGLDIPAVDL 398

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +++ +L S+ +  +HR GRT RAG+ G +V  + Q
Sbjct: 399 IVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQ 433


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 180/331 (54%), Gaps = 14/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L    L   D  +  +   AL
Sbjct: 36  GYKKPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCL----LQACDPHTRETQ--AL 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ       +    G+    CIGG S   + R L++G HIV GTPGR+ D 
Sbjct: 90  ILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESGVHIVSGTPGRVFDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR K L ++ LK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + +
Sbjct: 150 IRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPP-LQIILVSATLPADVLEMTE 208

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCSTR 254
            +  +   + +    R    +D  +   V++ +  N    ++  + +    +A+VFC+TR
Sbjct: 209 KFMTEPASILV---KRDEITVDSVKQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNTR 265

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  K +    F V A+ G++ Q ER   ++  R+G +RV I TD+ ARGID+  + 
Sbjct: 266 KKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLITTDLWARGIDVERVS 325

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LV+  +L    E  +HR GRTGR GR G+++
Sbjct: 326 LVLSYDLPLAREQYIHRIGRTGRMGRTGLAI 356


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 218 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGGQFS 277

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 278 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 337

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 338 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQT 397

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 398 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTH 457

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA   ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 458 GAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATA 517

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 518 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 560


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 7/344 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL- 63
           +N    I  AL+E GY  LT +Q+  +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQILD 65

Query: 64  --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 RF+      AL +APTRELA Q+ + +      T +  A   GG  +  + R L
Sbjct: 66  KPKSRGRFNVR----ALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL +H+  K +++++++ +V DEAD MLD+GF  D+  ++       +
Sbjct: 122 EKGVDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNPQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT S  +  LA +  +   R+ +  EN     + +    V    +   +  ++  
Sbjct: 182 IMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAHVVYPVDQERKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  +VF + + + +   K L +   + V   G+ +Q  R  AL   ++G+ARV +AT
Sbjct: 242 KNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +VAARG+D+  L  V++ ++    E+ +HR GRTGRAG KG ++
Sbjct: 302 EVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAI 345


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 187/341 (54%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF L  A   L +  R  P 
Sbjct: 14  DAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAF-LIPAIQYLLDFPRRDPG 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + L + PTRELA Q+  + E L  +T + + V  GG++    +   +    I++ TP
Sbjct: 73  FARV-LVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKEIFEKNNDILIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +R+  +FSAT+   
Sbjct: 132 GRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSATLEGD 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYHGAKNA 247
           ++   A+    D   +   S  ++ + I      V L+D    +   +VN L       A
Sbjct: 192 SVERFAETTLNDPALLEAESSRKEKAKIHQ---WVHLADDYHHKLELLVNTLNGPDVTKA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+ +ATDVAARG
Sbjct: 249 IVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRILVATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ +L    +  +HR GRTGRAG+KG+++ ++
Sbjct: 309 IDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLV 349


>gi|328873249|gb|EGG21616.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 397

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 189/368 (51%), Gaps = 9/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + + S +   
Sbjct: 32  DLPKDLLRGVYSYGFEKPSAIQQRAITPLAKGYDIIAQAQSGTGKTATFTIGILSQI--- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N       A   L IAPTRELA+Q+ + +  L     +    CIGG  V  + + LQ+G 
Sbjct: 89  NTSIFKCQA---LIIAPTRELAIQIQKVVVSLGEYLKIKCYACIGGTKVSDDVQSLQSGV 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ + +    +    ++  VLDEADEML  GF+D I  I    P+K ++ +F
Sbjct: 146 HVVVGTPGRVHEMLSRGVITRESIRIFVLDEADEMLSRGFKDQIYEIFRLLPEKIQVGLF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT++     +   +    V++ +  +      I    V V     + + + ++      
Sbjct: 206 SATMTEETLGITTKFMNTPVKILVKKDELTLEGIRQFYVNVGSEQGKFDVLTDLYETLSI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++FC+TR  V   T  L E  F V +  G+  Q++R   L   R G  RV I TD+ 
Sbjct: 266 TQSVIFCNTRRKVDWLTNKLTEQQFTVSSTHGD--QKDREGILSSFRSGITRVLITTDLL 323

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ ++  N EN +HR GR+GR GRKG+++  I  N Q + + L    N
Sbjct: 324 ARGIDVQQVSLVINYDIPGNLENYIHRIGRSGRFGRKGVAINFITNNEQDKIQELSTHYN 383

Query: 365 VSVVWEPA 372
             +   P+
Sbjct: 384 TFIQEMPS 391


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 192/358 (53%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 143 FPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 201

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + ++  +   C+ GGV    + RDL  G 
Sbjct: 202 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 260

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 261 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMY 320

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  +A ++Q D ++VNI S +    H       V+  +  RD  I ++ +   
Sbjct: 321 SATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLEQVME 380

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 381 NKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q++A  L
Sbjct: 441 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQAREL 498


>gi|326531756|dbj|BAJ97882.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 843

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/354 (38%), Positives = 193/354 (54%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA----END 67
           +AL++ GY++ T VQEA L   L  KDVLV A+TG+GK+VAF L A+ S L A     N 
Sbjct: 387 KALTDAGYIHTTVVQEAALPICLEGKDVLVKAKTGTGKSVAFLLPAIESVLNAMKSHTNH 446

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           R SP     AL + PTRELAVQV  E   L     GV V   IGG     ++R L+ +  
Sbjct: 447 RVSPI---FALVLCPTRELAVQVTAEANVLVKYHHGVGVQSLIGGTRFKLDQRRLESDPC 503

Query: 126 HIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI  +    + +  LK +VLDEAD +LDLGFR DIE I DS P++R+ 
Sbjct: 504 QILVATPGRLLDHIENRSSFSVRLMGLKLLVLDEADHLLDLGFRKDIEKIADSLPRQRQT 563

Query: 183 LMFSATISPAITTLAKN-YQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSATI   +  +++    KD V V+          + +  + ++V      + +  +L
Sbjct: 564 LLFSATIPKEVRRVSQMVLNKDHVFVDTVGLGAVETPTKVQQQYLVVPHELHFHMVHRLL 623

Query: 240 RYHGAK----NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           R H  +      IVFC+T A V+ F  ++   L   V  +     Q  R+   +  RD  
Sbjct: 624 REHIDQEVDYKVIVFCTT-AMVTEFMYIMLRDLKLNVREIHSRKPQLYRTRISEEFRDSN 682

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + + +DV+ RG++ PD+ LVI A +    E+ +HR GRTGR G+ G  + +I
Sbjct: 683 RLILVTSDVSTRGVNYPDVTLVIQAGVPPGREHYIHRLGRTGREGKSGKGILLI 736


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 192/358 (53%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 143 FPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 201

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + ++  +   C+ GGV    + RDL  G 
Sbjct: 202 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 260

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 261 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMY 320

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  +A ++Q D ++VNI S +    H       V+  +  RD  I ++ +   
Sbjct: 321 SATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIKHLEQVME 380

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 381 NKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q++A  L
Sbjct: 441 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQAREL 498


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 195/376 (51%), Gaps = 31/376 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++   ++I   ++   Y   T VQ+  +   L  +DV+  AQTGSGKT AF + +
Sbjct: 220 INTFEDVKLTEIIRSNIALTRYDKPTPVQKYAIPIILARRDVMACAQTGSGKTAAFLVPI 279

Query: 59  ASTLLAENDRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + L       + ++           PLAL +APTRELA Q+  E +    ++ V   V 
Sbjct: 280 LNQLFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVV 339

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  V ++ +DL+ G H++V TPGRL D +    + + H   +VLDEAD MLD+GF   
Sbjct: 340 YGGADVRQQMQDLERGCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQ 399

Query: 169 IEFIL--DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I+  D+ PK   R+ LMFSAT    I  LA+++ ++ + + +        +I  + V
Sbjct: 400 IRRIVEQDTMPKTGDRQTLMFSATFPKEIQMLARDFLENYIFLAVGRVGSTSENITQKIV 459

Query: 225 LVALSDRDNAIVNILRYHGAKN---------------AIVFCSTRASVSRFTKVLAEHLF 269
            V   D+ + ++++L   G                   +VF  T+       + L    +
Sbjct: 460 WVEEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGY 519

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
            V ++ G+ SQ+ER +AL+  R G+  + +AT VAARG+D+P ++ VI+ +L S+ E  +
Sbjct: 520 PVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYV 579

Query: 330 HRSGRTGRAGRKGMSV 345
           HR GRTGR G  G++ 
Sbjct: 580 HRIGRTGRMGNLGVAT 595


>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 629

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 192/363 (52%), Gaps = 16/363 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + + +   G+   T VQ+  +   L  +D+L  AQTGSGKT AF   + S L+ +
Sbjct: 158 NLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISNLMTQ 217

Query: 66  --NDRFSP--------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +   P         + P  L +APTREL+ Q+  E       TG    V  GG ++ 
Sbjct: 218 PGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGGAAIQ 277

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+V TPGRL D I    +++ +++ +VLDEAD MLD+GF   I +I++ 
Sbjct: 278 YQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVEK 337

Query: 176 S----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +    P +R  LMFSAT    I TLA+++  + + + +      H +I  + V     ++
Sbjct: 338 TGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFVYCKDDEK 397

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + ++  +        +VF  T+   S     L ++ F+  ++ G+ +Q+ER  AL+  R
Sbjct: 398 RDLMLEAIA-SVETLTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETALENFR 456

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            G   + +ATDVA+RG+D+ D+  VI+ +L  N E+ +HR GRTGRAG  G+S  F   +
Sbjct: 457 RGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGISTSFFTDK 516

Query: 351 NMQ 353
           N Q
Sbjct: 517 NNQ 519


>gi|238062179|ref|ZP_04606888.1| RNA helicase [Micromonospora sp. ATCC 39149]
 gi|237883990|gb|EEP72818.1| RNA helicase [Micromonospora sp. ATCC 39149]
          Length = 707

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 184/351 (52%), Gaps = 7/351 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ + +AL   G      +Q A +   L  +DVL   QTGSGKT+AFGL + + L   
Sbjct: 108 GLPQPLVQALGRLGIATPFPIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPVIARLAKR 167

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL + PTRELA+QV   L  L    G+ +   +GGV   R+   L+ G 
Sbjct: 168 ARARP--LHPRALVLVPTRELAMQVNDALVPLGKAVGIFLKTAVGGVPYDRQIDALRRGV 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  +L  +P   + L+F
Sbjct: 226 EIVVATPGRLGDLINRGVCHLDDVEVTVLDEADQMADMGFLPEVTELLAKTPAGSQRLLF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L K +  D V  + A      S +D+  +L+   D+     +I    G  
Sbjct: 286 SATLDGDVDSLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDKFAVTASIAARAG-- 343

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAA
Sbjct: 344 RTMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRMSVLVATDVAA 403

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRR 355
           RGI +  + LV+H +    P++ LHR+GRT RAG  G ++  V+P+  QRR
Sbjct: 404 RGIHVDGVSLVLHVDPPKEPKDYLHRAGRTARAGESGAVATLVLPK--QRR 452


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 191/353 (54%), Gaps = 6/353 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I   + ++G+   T +Q       L  KD++  A+TGSGKT+A+ L  A   +  
Sbjct: 133 NFPDYIMNVIRKQGFTVPTPIQAQGWPIALSGKDIVGIAKTGSGKTIAYMLP-AIVHIHN 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+          T +  +   GG     + RDL++G 
Sbjct: 192 QPPLELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDLESGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 252 EIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQVLMW 311

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA++Y  D +++NI S +   + +I     +    +++N +  +L   G+
Sbjct: 312 SATWPKEVRALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKENKLRQLLHEIGS 371

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+  V   T++L +  +  +++ G+ +QQER + L   R+GRA + +AT
Sbjct: 372 EKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRNGRASILVAT 431

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           DVAARG+D+ D++ VI  +  S+ E+ +HR GRTGR+ + G +  F  P N++
Sbjct: 432 DVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHNVK 484


>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
 gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
          Length = 522

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 192/392 (48%), Gaps = 50/392 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     
Sbjct: 18  LAKQLTKLGLKGATPIQQNCIPAILSGRDCIGAAKTGSGKTFAFALPILEKLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S   AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV 
Sbjct: 73  PVSH-FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+
Sbjct: 132 MPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM 191

Query: 190 SPAITTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILR 240
                   K++ K++    I+    E  Q SD+      D R +L A  DRD  ++  LR
Sbjct: 192 --------KDFMKESSIFPISKDCLEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALR 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  +N     ++F +T+      +  L       V L G + Q+ER  AL   +    R
Sbjct: 244 KYREENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNHIR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM-- 352
             IATDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKGM  S+F  P+++  
Sbjct: 304 TLIATDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLEL 363

Query: 353 ------------------QRRAERLFREANVS 366
                             QR  ER+F + NV+
Sbjct: 364 LGAIEEEINTKMTEHPIDQRMVERIFMQVNVT 395


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 198/352 (56%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 189/355 (53%), Gaps = 22/355 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            G AL E      +V  T VQ   +   L  +D++  AQTGSGKT+AF   + + +L + 
Sbjct: 157 FGTALDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDP 216

Query: 67  DRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R  P    + PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  +  + R+L+ 
Sbjct: 217 PRQRPRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELER 276

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKK 179
           G  I+V TPGRL D +    + +S +K + LDEAD MLD+GF   I  I+++S    P +
Sbjct: 277 GVDILVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQ 336

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I +LA ++  + + + +         I  R   V  +++ + +++I+
Sbjct: 337 RQTMLFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDII 396

Query: 240 RYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             HG K           +VF  T+         L    F    + G+ +Q ER  AL+  
Sbjct: 397 --HGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCF 454

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG  G++ 
Sbjct: 455 RTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLAT 509


>gi|299532536|ref|ZP_07045926.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
 gi|298719483|gb|EFI60450.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
          Length = 700

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 202/388 (52%), Gaps = 53/388 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALAS 60
           P++I +A+++ GY   T+VQ   +   + E        D++VS+QTGSGKT AF L +  
Sbjct: 60  PELI-QAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAFLLPVLH 118

Query: 61  TLLAE-----------------------------NDRFSPASA-------PLALAIAPTR 84
           TL+ +                             N R  P +A       P AL + PTR
Sbjct: 119 TLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGALVLCPTR 178

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ +A  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 179 ELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQ 237

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 238 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAMRVMHD 297

Query: 204 A----VRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
                 ++ IA+   +H++I  +A+  A  +  +   + + LR      AIVF ST+   
Sbjct: 298 GGANVKKITIATPQEKHANIK-QALFWADNMQHKRKLLDHWLRDSSINQAIVFASTQVEC 356

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V 
Sbjct: 357 DGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVF 416

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  L    E+  HR GRTGRAGR+G++V
Sbjct: 417 NYGLPMKAEDYTHRIGRTGRAGREGVAV 444


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 181/340 (53%), Gaps = 5/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ E G++  + +Q+  +   L  +D+L  AQTG+GKT AF L +  +L   
Sbjct: 7   NLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQSLSK- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S   AL I PTRELA+Q+    E     T +  +V  GGV    +   L+ G 
Sbjct: 66  ----GEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKAGI 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I    + +  ++  VLDEAD+MLD+GF +DI+ ++   PK R+ L+F
Sbjct: 122 DILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LA N   +   + I+        I+     V   ++ + + ++++ H   
Sbjct: 182 SATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKMS 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    R    L +   +  A+ G   Q  R  AL   ++G+ +V +ATD+AA
Sbjct: 242 RVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+ +L  V++ ++ +  E  +HR GRTGRAG  G ++
Sbjct: 302 RGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAI 341


>gi|29830698|ref|NP_825332.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607811|dbj|BAC71867.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 502

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 195/379 (51%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  ALS  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    + 
Sbjct: 73  MPSQLLAALSSEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ- 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P   PLAL + PTRELA QV   L        + +   +GG+S+ R+   L+ GA 
Sbjct: 132 -RAEPRQ-PLALVLVPTRELAQQVTDALAPYARSVKLRLTTVVGGMSIGRQSGALRAGAE 189

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML F
Sbjct: 190 VVVATPGRLKDLIDRGDCRLDQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML-F 248

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G  
Sbjct: 249 SATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHQATTEIAARDG-- 306

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 307 RVIMFLDTKHAVDRLTEHLLSSGVRAAALHGGKSQPQRNRTLSQFKTGHVTVLVATNVAA 366

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG+ G  V ++  + +R   RL   A +
Sbjct: 367 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGQSGSVVTLVTPHQRRDMSRLMTVAGI 426

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P    +R  DA+
Sbjct: 427 ------VPQTTQVRSGDAE 439


>gi|315633657|ref|ZP_07888947.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
 gi|315477699|gb|EFU68441.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
          Length = 432

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 191/349 (54%), Gaps = 11/349 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P   ++ +AL+++G+   T +Q   L   LR KDV   AQTG+GKT+AF  AL   
Sbjct: 25  FADFPLHPLVLQALNDKGFEFCTPIQALSLPVTLRGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 62  LLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           LL    E D+    + P AL +APTRELAVQ+  + +     T    A+  GG    ++ 
Sbjct: 85  LLTHPTETDK----NQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQL 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
           + ++NG  +++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L   P 
Sbjct: 141 KAIENGVDVLIGTTGRVIDYVKQGIIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPP 200

Query: 178 -KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++R  ++FSAT+S  +  LA     D   V I  E +    I       +  D+   ++
Sbjct: 201 PQQRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPEQKTGQQIKEELFYPSNQDKIPLLL 260

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     +  I+F +T+         LA    +V  L+G+++Q++R + L+   DG   
Sbjct: 261 TLLEEEWPERCIIFANTKHQCEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLD 320

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 321 ILVATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISI 369


>gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 448

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 74  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 194 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 314 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 356

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 357 SFKRVEAFLQQEIQ 370


>gi|264677044|ref|YP_003276950.1| hypothetical protein CtCNB1_0908 [Comamonas testosteroni CNB-2]
 gi|262207556|gb|ACY31654.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 690

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 202/388 (52%), Gaps = 53/388 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALAS 60
           P++I +A+++ GY   T+VQ   +   + E        D++VS+QTGSGKT AF L +  
Sbjct: 50  PELI-QAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAFLLPVLH 108

Query: 61  TLLAE-----------------------------NDRFSPASA-------PLALAIAPTR 84
           TL+ +                             N R  P +A       P AL + PTR
Sbjct: 109 TLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGALVLCPTR 168

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ +A  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 169 ELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQ 227

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 228 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAMRVMHD 287

Query: 204 A----VRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
                 ++ IA+   +H++I  +A+  A  +  +   + + LR      AIVF ST+   
Sbjct: 288 GGANVKKITIATPQEKHANIK-QALFWADNMQHKRKLLDHWLRDSSINQAIVFASTQVEC 346

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V 
Sbjct: 347 DGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVF 406

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  L    E+  HR GRTGRAGR+G++V
Sbjct: 407 NYGLPMKAEDYTHRIGRTGRAGREGVAV 434


>gi|293391078|ref|ZP_06635412.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951612|gb|EFE01731.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 418

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 187/338 (55%), Gaps = 3/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +AL+++G+   T +Q   L   LR+KDV   AQTG+GKT+AF  AL   LL    + 
Sbjct: 19  LVLQALNDKGFDFCTPIQALSLPITLRDKDVAGQAQTGTGKTIAFLTALFHHLLTYPKQ- 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +  + P AL +APTRELAVQ+  + +     T    A+  GG    ++ + ++NG  +++
Sbjct: 78  TEVNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIENGVDVLI 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSA 187
           GT GR+ D++R   + +  ++ VVLDEAD M DLGF  DI ++L   P  ++R  ++FSA
Sbjct: 138 GTTGRVIDYVRQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQRLTMLFSA 197

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA         V I  E +    I       +  D+   ++ +L     +  
Sbjct: 198 TLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPSNRDKIPLLLTLLEEEWPERC 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 258 IVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + ++  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 318 LHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISI 355


>gi|242069203|ref|XP_002449878.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
 gi|241935721|gb|EES08866.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
          Length = 688

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 184/357 (51%), Gaps = 28/357 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDR 68
           A+ E GY   + +Q A +   L+++D +  A+TGSGKT AF L L S +     + + +R
Sbjct: 287 AVDEAGYRKPSPIQMAAIPLGLQQRDAIAVAETGSGKTAAFALPLLSYVAGLPPITDENR 346

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGA 125
                 P AL + PTREL+ Q+  E   L    GV V    GG S   +  +   +Q G 
Sbjct: 347 HD---GPYALVMVPTRELSEQIAEETARLARYLGVRVVPVFGGGSEKTIAEQSERIQKGC 403

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +VV TPGRL D +  + + ++    VVLDEAD M+D+GF   +  +L   P        
Sbjct: 404 EVVVATPGRLLDLLERRYVVLNQCNYVVLDEADRMIDMGFEPQVASVLAVMPSSNLKPQN 463

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++  
Sbjct: 464 EDEELDEKKVYRTTFMFSATMPPAVERLARTYLRNPVVVTIGTPGKATELITQNVMMLKE 523

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +LR    K  IVFC+T+ +       L    F V AL G L+Q ER  +L 
Sbjct: 524 SEKMPQLHRLLRDLRDKTVIVFCNTKKTTDWCFNELKNAGFGVTALHGNLTQAERKASLD 583

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R+ +  V +A++VAARGI++PD+  VI+ ++ S+    +H  GRTGRAG+KG++ 
Sbjct: 584 GFRNRQFNVLVASEVAARGINIPDVAHVINYDMPSSINKYIHCIGRTGRAGKKGVAT 640


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEAL+       YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++ + 
Sbjct: 164 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 223

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  ++++ R+L+
Sbjct: 224 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 283

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 284 RGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 343

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++
Sbjct: 344 VRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDL 403

Query: 239 L---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L   R +G +      +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 404 LHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 463

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++       
Sbjct: 464 SGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDG 523

Query: 351 --NMQRRAERLFREANVSV 367
             ++ R    L +EAN  V
Sbjct: 524 NTSLARPLAELMQEANQEV 542


>gi|212636402|ref|YP_002312927.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 194/359 (54%), Gaps = 13/359 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ +A+S+RGY  LT VQ  +L   +  +D++  AQTG+GKT AF L L +TL+
Sbjct: 6   FDLHPHIL-DAVSKRGYKALTEVQCHVLPVAMLGQDIMACAQTGTGKTAAFALPLLNTLV 64

Query: 64  ---------AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                    AE D F+   + L  L + PTRELA+QV   ++          A   GG +
Sbjct: 65  GQALQQSKVAEEDTFNQYRSELKVLVLTPTRELAIQVADNIQAYAQCLPFKTAAVYGGAN 124

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           ++ +R+ +Q G  I+V TPGRL D I   GL++  +  +V+DEAD MLD+GF  DIE + 
Sbjct: 125 MNPQRKAVQAGVDILVATPGRLFDLIGQFGLDLGCVTHLVVDEADRMLDMGFVRDIERVK 184

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                + + L FSAT S  +  LA+        +++ +     S I     LV    +  
Sbjct: 185 RLVAVEHQTLFFSATYSEEVKALAQKMLVAPEWIDVTTAATA-SKIAQEVYLVDKRRKAE 243

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++  +  +  +VF S++ S       L     +     G+ +Q  R+ AL+  ++G
Sbjct: 244 LLSELVGRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGSRNRALEEFKNG 303

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG +G ++ FV PQ+
Sbjct: 304 KLRVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEGRAISFVSPQD 362


>gi|29830989|ref|NP_825623.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29608103|dbj|BAC72158.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 510

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 196/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + L  +
Sbjct: 83  DMPERLLTALGAEGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARL--D 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ GA
Sbjct: 141 GQRAEPRQ-PLGLVLVPTRELAQQVTDALTPYARALRLRLTTVVGGLSIGRQASALRGGA 199

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 200 EVVVATPGRLKDLIDRDDCRLDRVAITVLDEADQMADMGFMPQVTALLDQVRPDGQRML- 258

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 259 FSATLDRNVDLLVRRYLHDPVVHSVDPSAGAVTTMEHHLLHVHDTDKHATTTEIAARDG- 317

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R TK L     +  AL G  SQ +R+  L   +DG   V +AT+VA
Sbjct: 318 -RVIMFLDTKHAVDRLTKNLLSVGVRASALHGGKSQSQRTRTLAQFKDGHVTVLVATNVA 376

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL  +A 
Sbjct: 377 ARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRLMADAG 436

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           ++      P    +R  +A+
Sbjct: 437 IT------PQTTQVRSGEAE 450


>gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 512

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 182/345 (52%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++IG A  E G+   T +Q A +      +D++  AQTGSGKT A+ L L + LL +   
Sbjct: 50  ELIG-ACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ--- 105

Query: 69  FSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              A  P    L + PTRELA QV  +   L +  G+ VA  +GG  +  +  +L    H
Sbjct: 106 ---AKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRRPH 162

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ DH+   KG  +  L A+VLDEAD+ML++ +  +I  IL+  P  R+ L+F
Sbjct: 163 VVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTLLF 222

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  L      D V + +  +N     +    V    +     +   L      
Sbjct: 223 SATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYLTRESGN 282

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC + A V R T  L     Q + L G + Q+ R+ AL   ++GR R+ + TDVA 
Sbjct: 283 HILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVCTDVAQ 342

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P  ++V++  L    E+ +HR GRT RAG +G +V +I Q
Sbjct: 343 RGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQ 387


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 194/360 (53%), Gaps = 11/360 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   + ++G+ N T +Q       L  ++++  AQTGSGKT+A+ L  A   +   
Sbjct: 129 LPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLP-AILHINHQ 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R      P+ L +APTRELA Q+ +++   +  +  V   C+ GG     +  DL+ G 
Sbjct: 188 PRLLRYDGPIVLVLAPTRELAQQI-QQVAVSFGTSTFVRNTCVFGGAPKGPQVDDLERGV 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 247 EIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMW 306

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILR 240
           SAT  P +  LA+ +  D ++VN+ S N   ++ +   V+    D +      A++  + 
Sbjct: 307 SATWPPEVKNLAEEFLDDYIQVNVGSLNLS-ANHNISQVVDVCDDYEKEQKLYALLTDIF 365

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ SV    K++  + ++ + + G  SQ ER + L   R G+A + +A
Sbjct: 366 SQPDNKTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQFRSGQANILVA 425

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR+ R G +  FV P N  R+A+ L
Sbjct: 426 TDVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSSRTGTAFTFVTPSNA-RQAKDL 484


>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 418

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 185/335 (55%), Gaps = 3/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G+   T +Q   L   L  KD+   AQTG+GKT+AF  A+ + LL   +  + + 
Sbjct: 23  ALTELGFEYCTPIQAISLPITLLGKDIAGQAQTGTGKTLAFLPAVFNHLLINKEPENRSK 82

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ +APTRELA+Q+ ++       T + + +  GG  V  +R  L+ G  I++GT 
Sbjct: 83  DQPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRNKLEKGVDILIGTT 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATIS 190
           GR+ D ++   +N++ +++VVLDEAD M DLGF  DI ++    P+   R  ++FSAT+S
Sbjct: 143 GRIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPESNLRLNMLFSATLS 202

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA  +      + I  E     +I       + +++ + ++ ++     + AIVF
Sbjct: 203 HKVQELAFEHMNSPEHIQIEPERMTSENISEELFYPSNAEKMHLLLTLMEEEWPEKAIVF 262

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+ +  +    LA    +   L+G++ Q++R   L    DG   V +ATDVAARG+ +
Sbjct: 263 ANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFTDGDIDVLVATDVAARGLHI 322

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P +  V + +L  + E+ +HR GRTGRAG+KG ++
Sbjct: 323 PKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAI 357


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 186/337 (55%), Gaps = 7/337 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFS 70
            L   G+   T +Q   L   ++ KDV   AQTG+GKT+AF  A+   LL +    DR  
Sbjct: 23  GLEASGFEYCTPIQALSLPFAIKGKDVAGQAQTGTGKTIAFLAAIFHHLLKKPVAEDR-- 80

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P + P A+ +APTRELA+Q+ ++   +   TG+ + +  GG S   +R +L  G  I++G
Sbjct: 81  PKNKPRAIILAPTRELAIQIHKDALPIAKATGLKMGLVYGGESYDIQRDNLAKGVDIIIG 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSAT 188
           T GR+ D  + K +++S ++A+VLDEAD MLD GF  DI +++     PK+R  L+FSAT
Sbjct: 141 TVGRIIDFEKQKAMDLSGVEALVLDEADRMLDQGFIKDIRYLMRKMPEPKQRLNLLFSAT 200

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LA  +  +   V + +E    S I       +  D+   +  ++     + AI
Sbjct: 201 FTWDIRELAYQHMNEPEEVTVPAEKVTGSSITQELFHPSNDDKMALLQTLIEEEWPERAI 260

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+         LA    +V  L+G++ Q++R++ L+    G+  + +ATDVAARG+
Sbjct: 261 VFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRNSILEQFTQGKLDILVATDVAARGL 320

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +P +  V + +L  N  + +HR GRTGRAG +G S+
Sbjct: 321 HIPAVSHVFNYDLPDNCGDYVHRIGRTGRAGAEGHSI 357


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 185/343 (53%), Gaps = 17/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY   T VQ+  +   +  +D++  AQTGSGKT  F   + +    +N    P +A    
Sbjct: 147 GYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAF-QNGPSPPPTAQAGG 205

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 206 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 265

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK-RRM 182
           ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 266 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 325

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ K+ + +++        +I  +   V  +D+ + +++IL  H
Sbjct: 326 LMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTH 385

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA  +++F  T+      +  L    F   ++ G+ +Q+ER  AL+M R GR  + +AT 
Sbjct: 386 GAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATA 445

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 446 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 488


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 194/371 (52%), Gaps = 9/371 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  +I +   + L ++G    T +QE  +   L  +D++  AQTG+GKT+AF L +
Sbjct: 1   MSTFEALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
              +  E+          AL +APTRELA Q+  E   L      + A+ + GG  V ++
Sbjct: 61  LEQIDLESKTVQ------ALIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L     I++GTPGR+ DH+    L++S LK +VLDEAD+ML +GF  +IE I+ ++P
Sbjct: 115 IQRLGRMPQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDIIAAAP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ +M SAT+   +  LAK Y +D + V + +E      I+   V      +   +  
Sbjct: 175 VDRQFVMLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDRRKQATLRT 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AI+FC T+  VS+  + L    +    L G L+Q +R  A+     G+   
Sbjct: 235 MLDEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPF 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+  +  V + +L  + E+ +HR GRTGRAG  G+++ ++     R   
Sbjct: 295 LIATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGVAISIVTPRDGRSFR 354

Query: 358 RLFREANVSVV 368
            + RE  V V 
Sbjct: 355 DMERELGVEVT 365


>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152060561|sp|A5E6W6|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 504

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 189/349 (54%), Gaps = 12/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+++ E++    Y   T +Q A +   L+ KD++  A+TGSGKT AF + +  TL 
Sbjct: 103 FDLVPELL-ESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTL- 160

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                ++ A    AL +APTRELA Q+    + L +  G+     IGG+S+  + RDL  
Sbjct: 161 -----YTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMR 215

Query: 124 GAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             H+++ TPGRL DH+   KG ++  L+ +V+DE D M+DL +   I+ IL   P  +R+
Sbjct: 216 KPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQIPSHQRI 275

Query: 183 -LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +++AT+S  I    ++     V+V I    +    +     L + + +D  ++ I+  
Sbjct: 276 TYLYTATMSREIEKFKRSLN-SPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIVNL 334

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  T     R   +L    F+ V L G++ Q  R  A+   + G   + +AT
Sbjct: 335 DSMKRVIIFTRTVVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFKAGTP-ILVAT 393

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           DVAARG+D+P ++LVI+ ++  +P   +HR GRT RAG+ G ++ ++ Q
Sbjct: 394 DVAARGLDIPAVDLVINYDI-PDPTLYIHRVGRTARAGKAGKAISLVTQ 441


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L + +  L 
Sbjct: 393 FPKEILDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQSLP 452

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + DR   A   P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L+ 
Sbjct: 453 KIDRLETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRL 512

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 513 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 572

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 573 DTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 632

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 633 TEQIVHIMTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 692

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 693 GQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 752

Query: 339 GRKGMSV 345
           G+ G ++
Sbjct: 753 GKTGCAI 759


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 192/370 (51%), Gaps = 7/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   + +Q+  +   L  +D++ +AQTG+GKT  F L +   L+    + SP  
Sbjct: 15  AVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLMESKRKVSPNR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +    + G  ++V  PG
Sbjct: 75  V-RALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRRGLDVLVACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +    ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT +  I
Sbjct: 134 RLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKRQNLLFSATFADEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHGAKNAIVF 250
             LA     +   + +A  N     I+    LV   D+ N I    +++  +  +  +VF
Sbjct: 194 RELATGLLDNPAVIEVAPRNSTAERIEQ---LVHPCDKANKIALLSHLVTSNNWQQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AARG+D+
Sbjct: 251 TRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    S+  E
Sbjct: 311 DKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQSIPCE 370

Query: 371 PAPSVEAIRE 380
                EA RE
Sbjct: 371 QVAGFEASRE 380


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 197/366 (53%), Gaps = 32/366 (8%)

Query: 5   ENIP------------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ENIP            ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT 
Sbjct: 210 ENIPLHITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTA 269

Query: 53  AFGLALASTLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVV 104
           AF + + + +     R  P  A        PL L +APTRELA Q+  E      ++ + 
Sbjct: 270 AFLVPILNQIYESGPRPPPPQASTGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMR 329

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDL 163
            AV  GG ++  + R+L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD+
Sbjct: 330 PAVVYGGSNIVDQMRELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRYLVLDEADRMLDM 388

Query: 164 GFRDDIEFIL--DSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           GF   I  I+  D+ P   +R+ LMFSAT    I  LA+++  + + + +        +I
Sbjct: 389 GFEPQIRRIVQQDNMPPTGERQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENI 448

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNA------IVFCSTRASVSRFTKVLAEHLFQVVA 273
             + V V   D+ + ++++L+     ++      +VF  T+       + LA+  + V +
Sbjct: 449 TQKIVWVEEHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTS 508

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+ +Q+ER  AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR G
Sbjct: 509 IHGDRTQREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIG 568

Query: 334 RTGRAG 339
           RTGR G
Sbjct: 569 RTGRMG 574


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 187/356 (52%), Gaps = 21/356 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  GY   T +Q   +   L  +D++ SAQTG+GKT +F L     LL  
Sbjct: 7   NLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALERLLVP 66

Query: 66  NDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               SPA    P  L + PTRELA QV   ++       V     +GG+    +   L  
Sbjct: 67  ----SPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLLSQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF +D++ I  ++P +R+ L
Sbjct: 123 PVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRV--------NIASENRQHSDIDYRAVLVALSDRDNAI 235
           +F+AT+  A+  LA+   KD VRV        N++ E R H   D R        ++  +
Sbjct: 183 LFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVTDDMR-------HKNRLL 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++       AI+F +T+    +    L        AL G++SQ  R+  +  MR G+ 
Sbjct: 236 QHLVADASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKV 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           R+ +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N
Sbjct: 296 RLLVATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMN 351


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 180/335 (53%), Gaps = 14/335 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ   +   L   DVL  A+TG+GKT+AFGL +   L  +           AL + PT
Sbjct: 67  TPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPILHELAID------PYGICALVLTPT 120

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+G +   L    G+ + + +GG     +  DL    HIVV TPGRL DH+    
Sbjct: 121 RELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGNDLARRPHIVVATPGRLADHLESDS 180

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
            N       L+ +VLDEAD +LD  +  +++ IL+  PK+R+ L+FSATI+ A++ L + 
Sbjct: 181 ENTGKLFKKLRFLVLDEADRLLDGQYSIELKTILNFLPKQRQTLLFSATITSALSQLHQV 240

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA----IVFCSTRA 255
             K        SE      ++ + VL   + +D  +V +++    K+     ++F  T  
Sbjct: 241 SVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPDSLILIFSHTCR 300

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                  +     FQV +L  ++SQQER+++L   R GR ++ I TDVA+RG+D+P ++L
Sbjct: 301 ECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFRSGRIKILICTDVASRGLDIPHVDL 360

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           VI+  +  NP+  +HR GR+ RAGR G ++  + Q
Sbjct: 361 VINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQ 395


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 73  DMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 130 AGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRRGA 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 190 EVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQRML- 248

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 249 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAIATEIAARDG- 307

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT+VA
Sbjct: 308 -RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVATNVA 366

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL  E  
Sbjct: 367 ARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLVTPNQRRSMARLMAEVG 426

Query: 365 V 365
           V
Sbjct: 427 V 427


>gi|229817768|ref|ZP_04448050.1| hypothetical protein BIFANG_03040 [Bifidobacterium angulatum DSM
           20098]
 gi|229785557|gb|EEP21671.1| hypothetical protein BIFANG_03040 [Bifidobacterium angulatum DSM
           20098]
          Length = 741

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/381 (34%), Positives = 187/381 (49%), Gaps = 24/381 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  +   L+  G      +Q   L   L  +D+L   +TGSGKT+AF + L + L A  
Sbjct: 86  VPGALAHVLASDGKRTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVARLGASE 145

Query: 65  --------ENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                   E DR   A          P AL +APTRELA Q+   L  L    G+     
Sbjct: 146 HDIAAIEREADRRGSAGGKAATNLPRPRALVLAPTRELAKQIDEVLLPLAQAYGMTTTTV 205

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GGV   R+  +L+ GA IVVG PGRL D +R   L +S ++ VVLDEADEM D+GF   
Sbjct: 206 YGGVKYSRQIAELKAGAQIVVGCPGRLEDLLRQNALTLSSVECVVLDEADEMADMGFLPG 265

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +E +L   P   + ++FSAT+   +  + + +  D    ++        ++ +    +  
Sbjct: 266 VERLLGQIPADAQHMLFSATLDHGVDKVVERFLHDPKVHSVDDATSPVDEMTHHVFEITK 325

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            D+   IV  L   GA   I+F  T+    + ++ L +       L G L+Q +R   L 
Sbjct: 326 GDKPE-IVRTL-ASGAGKRILFTRTKFQAKKLSQSLTKQGIPCAQLHGNLNQNQRDRNLA 383

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FV 347
               G   V  ATDVAARGID+  +ELV+  E   +P+  LHRSGRT RAG +G  V  V
Sbjct: 384 AFETGEVNVLAATDVAARGIDVSGVELVVQVEPPEDPKAFLHRSGRTARAGNQGDVVTLV 443

Query: 348 IPQNMQRRAER-LFREANVSV 367
           +P+  QRR  R + R+A + V
Sbjct: 444 LPE--QRRETRFMLRKAGIKV 462


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 174/315 (55%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D +  AQ+G+GKT  F + +   L       S +    AL ++PTRELA Q+   ++ L
Sbjct: 64  RDTIAQAQSGTGKTATFSIGMLEVL------DSKSKECQALVLSPTRELATQIQNVIKHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +    CIGG +V  + + LQ G  IV GTPGR+ D I+ + L+  H+K ++LDEA
Sbjct: 118 GDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE+   GF++ I  I    P   ++++ SAT++  +  +   +  D V++ +  E    S
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPGVQVVVVSATLTHEVLEMTGKFTTDPVKILVKREEVSLS 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    +     D + + + ++        A++FC+T+  V+  T  + +  F VVA+ G
Sbjct: 238 GIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q+ER   +   R G +RV I+TDV ARGID+  + LVI+ +L  + EN +HR GR+G
Sbjct: 298 DMKQEERDAIMNDFRSGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQN 351
           R GRKG ++ ++ ++
Sbjct: 358 RFGRKGTAINLLTKS 372


>gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 512

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/345 (35%), Positives = 182/345 (52%), Gaps = 10/345 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++IG A  E G+   T +Q A +      +D++  AQTGSGKT A+ L L + LL +   
Sbjct: 50  ELIG-ACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ--- 105

Query: 69  FSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              A  P    L + PTRELA QV  +   L +  G+ VA  +GG  +  +  +L    H
Sbjct: 106 ---AKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACELSRRPH 162

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ DH+   KG  +  L A+VLDEAD+ML++ +  +I  IL+  P  R+ L+F
Sbjct: 163 VVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHNRQTLLF 222

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  L      D V + +  +N     +    V    +     +   L      
Sbjct: 223 SATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYLTRESGN 282

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC + A V R T  L     Q + L G + Q+ R+ AL   ++GR R+ + TDVA 
Sbjct: 283 HILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILVCTDVAQ 342

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P  ++V++  L    E+ +HR GRT RAG +G +V +I Q
Sbjct: 343 RGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQ 387


>gi|168023701|ref|XP_001764376.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684528|gb|EDQ70930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/368 (34%), Positives = 192/368 (52%), Gaps = 21/368 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + + L  +G  +L  +Q           D++  A+TG GKT+AF L +  +L   
Sbjct: 116 NIGKALRDKLKAKGIESLFPIQAQTFEAVFDGNDMVGRARTGQGKTLAFVLPVLESLSQS 175

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                     A   + +APTRELA QV  + E   +  G+      GG     +   L+ 
Sbjct: 176 GYTKNLQRGRAAAVIVLAPTRELAKQVHADFETYGSAVGLSTVCVYGGAPYGPQENALRR 235

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRR 181
           G  IVVGTPGR+ DH     LN+  LK  +LDEADEML++GF DD+E IL     P K +
Sbjct: 236 GVDIVVGTPGRIKDHFERGTLNLKSLKFRILDEADEMLNMGFVDDVETILGGVDDPSKVQ 295

Query: 182 MLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVA--LSDRDNAIVN 237
            L+FSAT+   +  +A+ + K A R  V++  + +  +    R +L+    S R   + +
Sbjct: 296 TLLFSATLPTWVQQIARKFLK-ATRKTVDLVGDEKMKASNSVRHLLLPGHYSMRTQLVQD 354

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++  +G+    IVF  T+   S     L     +  AL G++ Q +R   LQ  R G+  
Sbjct: 355 VISCYGSGGRIIVFTETKNDASELAGALKSGTAR--ALHGDIPQNQREVTLQGFRTGKFS 412

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVI 348
           V +ATDVAARG+D+ D++LVI  E   + E  +HRSGRTGRAG  G+SV        +++
Sbjct: 413 VLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGNTGVSVLFFDRKKEYMV 472

Query: 349 PQNMQRRA 356
           PQ ++R+A
Sbjct: 473 PQ-IERKA 479


>gi|254284787|ref|ZP_04959754.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425572|gb|EDN17348.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 452

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 185/343 (53%), Gaps = 17/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY   T VQ+  +   +  +D++  AQTGSGKT  F   + +    +N    P +A    
Sbjct: 220 GYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAF-QNGPSPPPTAQAGG 278

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 279 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 338

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK-RRM 182
           ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 339 LLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ K+ + +++        +I  +   V  +D+ + +++IL  H
Sbjct: 399 LMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDILHTH 458

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA  +++F  T+      +  L    F   ++ G+ +Q+ER  AL+M R GR  + +AT 
Sbjct: 459 GAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRSGRCPILVATA 518

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 519 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 561


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 217 YKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPAPTQQGGQFS 276

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 277 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 336

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 337 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQT 396

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 397 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTH 456

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           GA   ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 457 GAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATA 516

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 517 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 559


>gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H]
 gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H]
          Length = 669

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 178/339 (52%), Gaps = 10/339 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+ F L L    L    R        PL L I 
Sbjct: 243 TQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLVMICLEGELRCQIEEGEGPLGLIIC 302

Query: 82  PTRELAVQVGRELEWLY------AKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+RELA Q    +++         K  ++ ++C IGGVS   + R++Q G H+VV TPGR
Sbjct: 303 PSRELATQTHNVIKYFCEFLHEGGKYPMLRSLCMIGGVSTFDQGREIQKGIHMVVATPGR 362

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K + +   + +  DEAD ++DLGF +++   LD   ++R+ L+FSAT+   I 
Sbjct: 363 LNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSRQRQTLLFSATMPKKIQ 422

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
             AK+   + + +N+      + D+      V    + + ++ +L+  G    ++FC  +
Sbjct: 423 EFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELKLSYLLEVLQKTGPP-VLIFCENK 481

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L       +A+ G L Q ER  A+ + R+G+  + + TDVA++G+D P +E
Sbjct: 482 KDVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGLDFPSIE 541

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            VI+ ++  + EN +HR GRTGR G+ G++   I +N +
Sbjct: 542 HVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 580


>gi|50289021|ref|XP_446940.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661294|sp|Q6FS54|DBP3_CANGA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49526249|emb|CAG59873.1| unnamed protein product [Candida glabrata]
          Length = 540

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/320 (36%), Positives = 186/320 (58%), Gaps = 16/320 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + LL  +   S       L I+PTRELA Q+   L
Sbjct: 163 LSGKDVIGVAETGSGKTFAFGVPAINNLLTSS---SKPKGIKVLVISPTRELASQIYDNL 219

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+   V  GGV    +RR +   +++VV TPGRL D I    +++S +  +VL
Sbjct: 220 VLLTQKVGIDCCVVYGGVPKDDQRRQIAK-SNVVVATPGRLLDLIEEGSVDLSPVDYMVL 278

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+  +  K R+ LMF+AT    +  LA  + K+ V+V+I   N
Sbjct: 279 DEADRMLEKGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELASTFMKEPVKVSIG--N 336

Query: 214 RQHSDIDYRAV-LVALSD---RDNAIVNILRYHGA---KN--AIVFCSTRASVSRFTKVL 264
           R     + R   +V + D   ++  ++++L+ + +   KN   ++F   +   SR  + L
Sbjct: 337 RDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVLIFALYKKEASRVERNL 396

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             + ++V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+      
Sbjct: 397 NYNGYKVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLT 456

Query: 325 PENLLHRSGRTGRAGRKGMS 344
            E+ +HR GRTGRAG+ G +
Sbjct: 457 VEDYVHRIGRTGRAGQTGTA 476


>gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 654

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 180/338 (53%), Gaps = 9/338 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+ F L L  T L    R        PL L I 
Sbjct: 229 TQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLIIC 288

Query: 82  PTRELAVQ----VGRELEWLYA-KTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRL 135
           P+RELA Q    +    E+LY  K  ++ ++C IGGVS + +  +++ G H++V TPGRL
Sbjct: 289 PSRELASQTHNIIKYFCEYLYKDKFPMLKSLCVIGGVSTYEQGNEIKKGVHMLVATPGRL 348

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K + +   + +  DEAD ++DLGF ++I   LD+   +R+ L+FSAT+   I  
Sbjct: 349 NDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNTLDNFSSQRQTLLFSATMPRKIQE 408

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            AK+   + + +N+      + D+      V    + + ++ +L+  G    ++FC  + 
Sbjct: 409 FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQKTGPP-VLIFCENKK 467

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L       +A+ G L Q ER  A+ + R+G   V + TDVA++G+D P +E 
Sbjct: 468 DVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDFPSIEH 527

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           VI+ ++  + EN +HR GRTGR G+ G++   I +N +
Sbjct: 528 VINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 565


>gi|66812646|ref|XP_640502.1| hypothetical protein DDB_G0281925 [Dictyostelium discoideum AX4]
 gi|60468518|gb|EAL66522.1| hypothetical protein DDB_G0281925 [Dictyostelium discoideum AX4]
          Length = 586

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 183/335 (54%), Gaps = 13/335 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+   T +Q       L   D++  A TGSGKT+AF L     +++   R S  + PL 
Sbjct: 128 QGFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLV 187

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+    +     T +      GG+    + R L+NG  IV+GTPGRL D
Sbjct: 188 LVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLND 247

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +R   L  S ++ +VLDEAD MLD+GF   IE ++D  PK+R+ LMFSAT    +  LA
Sbjct: 248 LLRKHHL--SSVQYLVLDEADRMLDMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLA 305

Query: 198 KNYQKDAVRVNIASEN-------RQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             + KD +++ + S+         QH  +ID  + L +     + I  IL        IV
Sbjct: 306 SKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIV 365

Query: 250 FCSTRASVSRFTKVLA--EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           FC+ +     F   L+  +++  +V  SG+  Q+ R + L++ RD R R+ IATDVAARG
Sbjct: 366 FCNEKYKCDDFQHYLSTQKNVKSIVLHSGK-DQRMRESGLKLFRDHRIRILIATDVAARG 424

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +D+P ++ V +  L  N E+ +HR GRTGRAG+ G
Sbjct: 425 LDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTG 459


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 193/363 (53%), Gaps = 8/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + E L   G    T VQE  +   L  +DV+  AQTG GKT++F + L       
Sbjct: 9   KVDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLF------ 62

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            D+  P    + AL ++PTRELA Q   E+  L   TG+      GG     E+R + + 
Sbjct: 63  -DKVDPQKEFVQALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGHR 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGRL DH+R    ++  +K +VLDE DEML  GF +DIE +L   P+  + +M
Sbjct: 122 AQVLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMM 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT+   +  L +    + + ++IA +    S I    + V+   + +A+ +++R +  
Sbjct: 182 CSATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRYNP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VFC ++      +  L    F V  L G++SQ +R   ++  R  + ++ +A+D+A
Sbjct: 242 FLMLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  +P+  +HR GRTGRAG +G ++     +  R  + L ++ +
Sbjct: 302 ARGLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKLD 361

Query: 365 VSV 367
           +++
Sbjct: 362 ITL 364


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/373 (32%), Positives = 191/373 (51%), Gaps = 15/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  +L   
Sbjct: 46  NLQENLLRGIYAYGFEKPSAIQQRGIVPFSKGFDVIQQAQSGTGKTATFCAGILQSL--- 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S      AL +APTRELA Q+ + +  L     V    C+GG SV  + R LQ G 
Sbjct: 103 --DYSVHECQ-ALVLAPTRELAQQIEKVMRALGDYLQVKCHACVGGTSVREDTRILQAGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ D +R + L    +K   LDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVIVGTPGRVYDMLRRRALKSDSIKIFALDEADEMLSRGFKDQIYDIFTLLPPKVQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V     + + + ++      
Sbjct: 220 SATLPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEQWKLDTLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFANTRRKVDWLTDNMRARDFTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+S+ FV  ++     ERL ++ 
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTAED-----ERLLQDI 394

Query: 364 N--VSVVWEPAPS 374
                 V E  PS
Sbjct: 395 QRFYQTVIEELPS 407


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 186/352 (52%), Gaps = 18/352 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +             EN R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLVACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + +++IL   G
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATG 437

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           + +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 438 SDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 497

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++  F   +NM 
Sbjct: 498 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549


>gi|237799853|ref|ZP_04588314.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022708|gb|EGI02765.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 484

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 188/349 (53%), Gaps = 14/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQ- 159

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++ +
Sbjct: 160 ----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLK 215

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P 
Sbjct: 216 QLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPH 275

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ L+FSAT +  +  LAK +  +   V I S N    +++     VA +D+   + 
Sbjct: 276 KGERQTLLFSATFTEDVMNLAKQWTTEPSIVEIESLNVASDNVEQHIYAVAGADKYKLLY 335

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ R
Sbjct: 336 NLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+
Sbjct: 396 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSI 444


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEAL+       YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++ + 
Sbjct: 166 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 225

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  ++++ R+L+
Sbjct: 226 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 286 RGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 345

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++
Sbjct: 346 VRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDL 405

Query: 239 L---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L   R +G +      +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 406 LHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 465

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++       
Sbjct: 466 SGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDG 525

Query: 351 --NMQRRAERLFREANVSV 367
             ++ R    L +EAN  V
Sbjct: 526 NTSLARPLAELMQEANQEV 544


>gi|229526303|ref|ZP_04415707.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336461|gb|EEO01479.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 452

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
 gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
          Length = 664

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 207/393 (52%), Gaps = 27/393 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           + L  RG  NL  +Q+          D++   +TGSGKT+A+ L +   +    L +N  
Sbjct: 38  KVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKN 97

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P  L + PTRELA+QV  E    L+ +    +    GG  +  +   ++ G  I
Sbjct: 98  ------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCEI 151

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFS 186
           VVGTPGR+ D +  K L +  ++ VVLDEAD+ML+ GF+++IE I+   + +K +ML+FS
Sbjct: 152 VVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQMLLFS 211

Query: 187 ATISPAITTLAKNY-QKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           ATI   +  L+  Y + +   +N+    E +  + + + A+  A +    AI +++  +G
Sbjct: 212 ATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYG 271

Query: 244 AKNA--IVFCSTRASVSRF---TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            ++A  I+FC T+   +     +K+ AE       L G++ QQ+R+   +  ++G+ +  
Sbjct: 272 GRHARTIIFCETKRECNEIILHSKLPAE----TQPLHGDIPQQQRTVTFEGFKNGKFKCL 327

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D P ++L+I      + E+ +HRSGRTGRAG+ G+ +    +      ER
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKDMGLIER 387

Query: 359 LFREANVSVVWEPAPSVEAI---RERDAQRILQ 388
           + R A +  +   AP  + I     RD Q  LQ
Sbjct: 388 VERVAKIKFIKISAPQHQDIIKASSRDLQTSLQ 420


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 184/343 (53%), Gaps = 13/343 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AE 65
           Q + +AL+E GY  LT VQ   +    R  D+L  AQTG+GKT AF L +   L+     
Sbjct: 10  QDLVKALTEIGYEKLTPVQAKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLIDTPKS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF+      AL +APTRELA Q+   +      T +      GG  +  + + L+ G 
Sbjct: 70  KSRFNVR----ALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEKRLEQGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL +H+    +++++L+ ++ DEAD MLD+GF   I  ILD    K + ++F
Sbjct: 126 DILVATPGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTKPQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  LA +      R+ +  EN   S  D  + +V   D D     +    G K
Sbjct: 186 SATSSAQMNALAADILHKPQRITVTPEN---STADTVSHVVYPVDEDRKTELLSELIGKK 242

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    +VF + + + ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+
Sbjct: 243 NWRQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATE 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++
Sbjct: 303 VAARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAI 345


>gi|146421825|ref|XP_001486856.1| hypothetical protein PGUG_00233 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 534

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 184/324 (56%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A     L   DV+  A+TGSGKT AFG+   + ++ +N +         L I+PT
Sbjct: 153 TPIQSASWPYLLNGDDVVGVAETGSGKTFAFGVPAINNIITDNKK-----GLRVLCISPT 207

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+   L  L    G+      GGV   ++ + ++  A +VV TPGRL D +    
Sbjct: 208 RELALQIYDNLTMLTKNCGLTCVAIYGGVPKDQQIKAVKT-ASVVVATPGRLVDLLNDGA 266

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++S +  +VLDEAD ML+ GF +DI+ I+  + K+R+ LMF+AT    +  LA  +   
Sbjct: 267 VDLSTIDYLVLDEADRMLEKGFEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFMNK 326

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAKNAI-VFCSTRASVSRF 260
           AV+V+I + +   ++      +  +  RD    ++ +LR +G+   I VF   +   +R 
Sbjct: 327 AVKVSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEATRV 386

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
             +L    F V A+ G+L QQ+R++AL   + G + + +ATDVAARG+D+P++++VI+  
Sbjct: 387 EAMLRRSGFNVAAIHGDLLQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLT 446

Query: 321 LSSNPENLLHRSGRTGRAGRKGMS 344
                E+ +HR GRTGRAG+ G++
Sbjct: 447 FPLTVEDYVHRIGRTGRAGQTGIA 470


>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 448

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 187/346 (54%), Gaps = 5/346 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P++   A+ + G+   T VQ A +   L  KD+L+SA+TGSGKT A+ L     +L
Sbjct: 5   FDLHPKLTA-AIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHRVL 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +E     P +    L + PTRELA QV ++ E L  +TG+   +  GG     +   L+ 
Sbjct: 64  SER---KPKAGIRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRR 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IV+ TPGR+ +H+     ++  ++ +VLDE D MLD+GFRD++  I        + L
Sbjct: 121 NPEIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTL 180

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + SAT+    ++++AK+   DA  + I  E  Q +    R      + +   +  +L + 
Sbjct: 181 LLSATLKHRGVSSVAKDILNDAEFIQIKPEMLQENIRQQRIFSDGPAHKTKLVDWLLSHE 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF  TR         L  H  +V  L GE+ Q ER+  +   RDG   V +ATD
Sbjct: 241 TFQKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  ++LV++ +++ + +  +HR GRTGRAG+ G++V ++
Sbjct: 301 LAARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLV 346


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 112/327 (34%), Positives = 177/327 (54%), Gaps = 3/327 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++E GY   T +QE  +   +   D++ SAQTGSGKT AF L   + L   
Sbjct: 7   NLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPALNRLATP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +    P   P  L + PTRELA QV              +   +GG+    + R L +  
Sbjct: 67  S--AMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRLLSSHV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+    ++ S L+ ++LDEAD MLD+GF DD+E I  ++P  R+ L+F
Sbjct: 125 DILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAAATPATRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244
           SAT+   +  LA    K   R+N+++   +H +I+ R +    ++ ++  + ++L     
Sbjct: 185 SATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHKNKMLSHLLTDTEV 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF +T+         L+     V AL G++SQ+ER+  L  MR+G  R+ +ATDVA
Sbjct: 245 NQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVRILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHR 331
           ARG+D+  +  VI+ +L    E+ +HR
Sbjct: 305 ARGLDVRGISHVINFDLPKFAEDYVHR 331


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 199/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 88  NFPQYVLDVLLDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAMVHINH 146

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y KT  + + CI GG     + RDL+ G
Sbjct: 147 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKTSRLKSTCIYGGAPKGPQIRDLERG 205

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 206 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 265

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++NI + E   + +I     +   S++D+ ++ ++    
Sbjct: 266 WSATWPKEVRQLAEDFLRDYSQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEEIM 325

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQQER   L   R G+A + IA
Sbjct: 326 AEKENKTIIFVETKRRCDELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIA 385

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 386 TDVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELV 445

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 446 KVLEEANQTI 455


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 124/351 (35%), Positives = 185/351 (52%), Gaps = 6/351 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +P    +  A+   GY   T +QE  +   L  KD+L  AQTG+GKT AF L +   
Sbjct: 3   FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL      SP +   AL + PTRELA+QV          T +  A   GGV+ + +++ L
Sbjct: 63  LLDSGKFRSPKTC-RALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQKQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  ++V TPGRL D I  K +++  L+  VLDEAD MLD+GF  DI  ++   P+ R+
Sbjct: 122 IRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQDRQ 181

Query: 182 MLMFSATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            L FSAT+   I+ LA    + + VRV +A ++     I      +    +   +  +L 
Sbjct: 182 NLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKELLA 241

Query: 241 YHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            H   K  +VFC T+    +  +VL +   +  A+ G  SQ  R  AL   +  + RV +
Sbjct: 242 EHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIRVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           ATD+AARGID+ D+  V + +L +  E  +HR GRT RAG++G+++ F  P
Sbjct: 302 ATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSP 352


>gi|226287504|gb|EEH43017.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 486

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 188/324 (58%), Gaps = 13/324 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S +S   A+ I PTRELA Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINGSRS-SSRISAVIITPTRELATQIYDQL-IK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +    V +A   GG S   +RR L+  A +VV T GRL D    + L +  +K +VLDEA
Sbjct: 166 FTPNNVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI---ASE 212
           D MLD GF  DI+ I+D+ P  KKR+ +MF+AT   ++  LA  + KD V + I   +S+
Sbjct: 225 DRMLDKGFEQDIKDIVDAMPSSKKRQTVMFTATWPISVRKLAATFMKDHVTITIGDLSSD 284

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAEH 267
            R ++ I     ++   D+++ ++++L +Y   KNA    +VFC  +   +R  +++   
Sbjct: 285 IRANTRIKQIVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERLIRSK 344

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F+V  + G+++Q ER  +L   + G   + +ATDVAARG+D+P + LV++       E+
Sbjct: 345 GFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNVTFPLTVED 404

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQN 351
            +HR GRTGRAG  G+++ +  +N
Sbjct: 405 YVHRIGRTGRAGADGLAITMFTEN 428


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 201/393 (51%), Gaps = 42/393 (10%)

Query: 5   ENIPQVI--------GEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P  +        GEAL+       YV  T VQ   +   L  +D++  AQTGSGKT 
Sbjct: 181 ENVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTA 240

Query: 53  AFGLALASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           AF   + S ++           R +    PLAL ++PTREL++Q+  E      +TGV V
Sbjct: 241 AFCFPIISGIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKV 300

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  ++++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF
Sbjct: 301 VVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGF 360

Query: 166 RDDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++ +    P  R+ ++FSAT    I  LA ++  + + + +         I  
Sbjct: 361 EPQIRKIVEQNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQ 420

Query: 222 RAVLVALSDRDNAIVNIL---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           R   V  SD+ + ++++L   R +G +      +VF  T+         L  + F   ++
Sbjct: 421 RVEFVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSI 480

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ SQQER  AL+  R G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GR
Sbjct: 481 HGDRSQQEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR 540

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           TGRAG+ G+            A   F E N S+
Sbjct: 541 TGRAGKSGL------------ATAFFNEGNASL 561


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 189/355 (53%), Gaps = 22/355 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            G AL E      +V  T VQ   +   L  +D++  AQTGSGKT+AF   + + +L + 
Sbjct: 155 FGTALDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDP 214

Query: 67  DRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R  P    + PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  +  + R+L+ 
Sbjct: 215 PRQRPRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELER 274

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKK 179
           G  I+V TPGRL D +    + +S +K + LDEAD MLD+GF   I  I+++S    P +
Sbjct: 275 GVDILVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQ 334

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I +LA ++  + + + +         I  R   V  +++ + +++I+
Sbjct: 335 RQTMLFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDII 394

Query: 240 RYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             HG K           +VF  T+         L    F    + G+ +Q ER  AL+  
Sbjct: 395 --HGQKAIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCF 452

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG  G++ 
Sbjct: 453 RTGMTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLAT 507


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 54  DMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 111 AGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRRGA 170

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 171 EVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQRML- 229

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 230 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAIATEIAARDG- 288

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT+VA
Sbjct: 289 -RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVATNVA 347

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL  E  
Sbjct: 348 ARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLVTPNQRRSMARLMAEVG 407

Query: 365 V 365
           V
Sbjct: 408 V 408


>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 435

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 179/338 (52%), Gaps = 2/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++ +GY + + +Q   +   L  KD++ +AQTG+GKT  F L L   L       +
Sbjct: 12  ILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLELL--NRGTHA 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ G  I+V 
Sbjct: 70  RGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKLRKGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 130 TPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQNLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK    + V V+++  N     ++     V  + +  A++ +++ +  +  +VF
Sbjct: 190 DDIRALAKGLVNNPVEVSVSPPNTTVEAVEQFVCPVDKNQKTPALIRMIKDNDWQQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L        A+ G  SQ  R+ AL   + G+ R  +ATD+AARG+D+
Sbjct: 250 SRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 310 SQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLV 347


>gi|253690374|ref|YP_003019564.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259585615|sp|C6DHF5|RHLB_PECCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|251756952|gb|ACT15028.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 430

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           +NG  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSI 357


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 192/376 (51%), Gaps = 3/376 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  +I +A+ + GY   T VQ   +   L   D++ SA TG+GKT AF L     L  +
Sbjct: 7   NLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPALQRLTNK 66

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R    +  P  L + PTRELA Q+ + +              +GG+    + R L   
Sbjct: 67  EHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQLRALSRP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D +  + +++S +  +VLDEAD MLD+GF D++  I   +P+ R+ L+
Sbjct: 127 IDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKIASFTPETRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + +LA+   KD  R+ + S+  Q++      +      ++  ++++L     
Sbjct: 187 FSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIADDFKHKNRLLLHVLDNEEL 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+   +   + L        AL G++ Q  R+  L  +R G+ R+ +ATDVA
Sbjct: 247 TQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRTLMNLRRGKLRLLVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREA 363
           ARGID+  +  VI+ +L    E+ +HR GRTGRAG  G ++ F +P +  R   R+ R  
Sbjct: 307 ARGIDVTTVTHVINFDLPRFAEDYVHRIGRTGRAGAAGTAISFALPDDA-RHLARIERYT 365

Query: 364 NVSVVWEPAPSVEAIR 379
            + V     P +E  R
Sbjct: 366 GIQVPQVIIPGLEPTR 381


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/332 (34%), Positives = 179/332 (53%), Gaps = 6/332 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   ++  GY + T +Q   + P +  +DV+  AQTG+GKT AF L +   L+       
Sbjct: 12  VAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPILHRLMQGKQGHV 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA Q+   +  L  +T +      GGV+++ + + L++G  IVV 
Sbjct: 72  -----RALIVAPTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQKLKSGVEIVVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL DHI    +++S ++ +VLDEAD+M D+GF  DI  IL   PK+R+ L+FSAT+ 
Sbjct: 127 CPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQRQTLLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA     D V V + +       + +    V    +   ++ +LR+   ++ +VF
Sbjct: 187 DEIRRLAHEVLNDPVTVQVGN-TAPPVTVSHALYPVEQHLKTPLLLELLRHTDTESVLVF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AARGID+
Sbjct: 246 TRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDV 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             +  V++ ++    E  +HR GRTGRA R G
Sbjct: 306 SQISHVVNYDIPDTAEAYVHRIGRTGRAARSG 337


>gi|312221299|emb|CBY01239.1| hypothetical protein [Leptosphaeria maculans]
          Length = 613

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/372 (32%), Positives = 205/372 (55%), Gaps = 18/372 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+   G+  +T +Q+  + P L  KDVL +A+TGSGKT+AF +     L A   RF P 
Sbjct: 147 EAIKNMGFETMTEIQQKTIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSAM--RFKPR 204

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 205 NGTGVIVVSPTRELALQIFGVARELMEKHSQT---FGIVIGGANRRAEAEKLVKGVNLLI 261

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   +G    +LK++++DEAD +L++GF D++  ++   P  R+ ++FSAT
Sbjct: 262 ATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSVIKILPSDRQTMLFSAT 321

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGA 244
            +  +  LA+ + +   + +N+    ++HS ++       + D D     + + L+ H  
Sbjct: 322 QTTKVEDLARISLKPGPLYINV-DYRKEHSTVEGLEQGYVICDSDTRFRLLFSFLKKHQK 380

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+L QQ R+N      +  +   I TDVA
Sbjct: 381 KKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQVRTNRFFEFCNATSGTLICTDVA 440

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRRAERLFRE 362
           ARG+D+P+++ VI  +   +P + +HR GRT R    KG S+ F++P  +     +L +E
Sbjct: 441 ARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSDGKGRSLMFLLPSEIGFL--KLLKE 498

Query: 363 ANVSVVWEPAPS 374
           A V +V    P+
Sbjct: 499 ARVPLVEFELPA 510


>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
 gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
          Length = 613

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 186/347 (53%), Gaps = 6/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L   
Sbjct: 7   NLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQRLASG 66

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  ++F        L + PTRELA QV   L        +   V  GGV +  +   ++
Sbjct: 67  AAPKNKFG-GKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIARIE 125

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G  ++V TPGRL D + G+G +++S ++ ++LDEAD MLD+GF  D++ +L   PK ++
Sbjct: 126 KGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPKDKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I++ 
Sbjct: 185 SLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHIIQE 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  +AT
Sbjct: 245 NNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRALVAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++
Sbjct: 305 DIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLV 351


>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
 gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 441

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 180/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++GY   T++Q   + P +  +DVL SA TG+GKT AF L +   LL    + S   
Sbjct: 18  ALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L A T + +A   GGV+             +VV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQDVVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   K+ V V      R+   I    YRA  V    +   +V++L+    + +++
Sbjct: 196 IREFAERILKEPVEVEADPSRRERKKILQWYYRADDVV--HKTALLVHLLKQPDVQKSVI 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDVAARG+D
Sbjct: 254 FVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  V + ++    +  LHR GRTGRAGRKG ++ ++
Sbjct: 314 ILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLV 352


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 181/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++   +   +          
Sbjct: 52  EYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQ------ 105

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTR LA Q  + ++ +     +    CIGG SV  + R L++G H+V GTPGR+C
Sbjct: 106 ALILSPTRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVC 165

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML  GF+D I  +    P   ++ + SAT+   I  +
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  + V++ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 226 TSKFMTEPVKILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 283

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV I TDV ARGID+  +
Sbjct: 284 KRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQV 343

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375


>gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 447

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 190/377 (50%), Gaps = 20/377 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL++ GY   T++Q+ + +  +  +DV   AQTG+GKT A+ L     +   
Sbjct: 7   NLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTLRQM--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  L I PTREL VQV   ++ L     + V    GGV++  +  ++  G 
Sbjct: 64  --QFSKDRQPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVEIMQGL 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D + G  L    +K +V+DE DEML+LGFR  ++ +LD  P KR+ L+F
Sbjct: 122 DVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L  +Y    VRV  A        ID     V      N    I       
Sbjct: 182 SATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVP-----NFYTKINLLTLLL 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLF---------QVVALSGELSQQERSNALQMMRDGRAR 296
           N      T+  V   TK LA+ LF         QV  +    +Q +R  A+   + G  R
Sbjct: 237 NRNA-AMTKVLVFVATKQLADQLFEQLESGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYR 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ ARGID+ D+  V++ +L   PEN +HR GRTGRA R+G++V  I ++ +   
Sbjct: 296 ILIATDIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQ 355

Query: 357 ERLFREANVSVVWEPAP 373
           E + +  N  +   P P
Sbjct: 356 EAIEQLMNQPIPMLPLP 372


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 187/355 (52%), Gaps = 15/355 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL +APT
Sbjct: 65  SAIQQRGIVPFTKGLDVIQQAQSGTGKTATF----CSGILQQLD--YQLLECQALVLAPT 118

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+ + +  L     V V  C+GG SV  ++R LQ G H+VVGTPGR+ D +R   
Sbjct: 119 RELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVYDMLRRNA 178

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K  VLDEADEML  GF+D I  I    P+K ++ +FSAT+ P    + + +   
Sbjct: 179 LRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQKLQVGVFSATMPPEALEITRKFMNK 238

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTRASVSR 259
            V++ +  +      I    V V   DR+    + + ++        +++F +TR  V  
Sbjct: 239 PVKILVKRDELTLEGIKQFYVNV---DREEWKLDTLCDLYETLAITQSVIFINTRRKVDW 295

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI+ 
Sbjct: 296 LTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 355

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           +L + PEN LHR GR+GR GRKG+++  + ++  R  + + +  N   V E  PS
Sbjct: 356 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQDIQKFYN--TVIEELPS 408


>gi|126134609|ref|XP_001383829.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
 gi|146286101|sp|A3LRW2|DBP3_PICST RecName: Full=ATP-dependent RNA helicase DBP3
 gi|126095978|gb|ABN65800.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 526

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 114/318 (35%), Positives = 182/318 (57%), Gaps = 14/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   + +L         S    L I+PTRELA Q+   L
Sbjct: 151 LSGKDVIGVAETGSGKTFAFGVPAINNILTLG-----KSGLSVLCISPTRELASQIYDNL 205

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L + T V      GGV  H + ++L+N A++VV TPGRL D I    +N+  +  +VL
Sbjct: 206 VDLTSNTNVKCVCVYGGVPKHDQVKNLKN-ANVVVATPGRLLDLIEDGAVNLGTVDYLVL 264

Query: 155 DEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF D I+ I+  + K+ R+ LMF+AT    +  LA  +    V+V+I   +
Sbjct: 265 DEADRMLETGFEDAIKAIIGGTKKENRQTLMFTATWPQEVRKLASTFMNQPVKVSIGDRD 324

Query: 214 RQHSDIDYRAVLVALS--DRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAE 266
              ++     ++  +   D++  ++ +LR +  G+K     ++F   +   +R   +L  
Sbjct: 325 ELAANKRITQIVEVIEPFDKEKKLLGLLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRR 384

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R+NAL   + G + + +ATDVAARG+D+P++++VI+       E
Sbjct: 385 NSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVE 444

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 445 DYVHRIGRTGRAGQTGTA 462


>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
 gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 616

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 186/347 (53%), Gaps = 6/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L   
Sbjct: 10  NLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQRLASG 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  ++F        L + PTRELA QV   L        +   V  GGV +  +   ++
Sbjct: 70  TAPKNKFG-GKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIARIE 128

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G  ++V TPGRL D + G+G +++S ++ ++LDEAD MLD+GF  D++ +L   PK ++
Sbjct: 129 KGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPKDKQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I++ 
Sbjct: 188 SLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHIIQE 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  +AT
Sbjct: 248 NNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRALVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++
Sbjct: 308 DIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLV 354


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 180/343 (52%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 204 YKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFS 263

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 264 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 323

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 324 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQT 383

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 384 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTH 443

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 444 GTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATA 503

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 504 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 546


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 75  DMPTELLAALGSQGVTAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 134

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 135 R---AEAGQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPISRQAGALRRGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EIVVATPGRLKDLIERGDCRLDQVVVTVLDEADQMADMGFMPQVTALLDQVRPQGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  AI  I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAAAVTTMEHHVLHVHGADKHAAITEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L +   +  +L G  SQ +R+  L   ++G   V +AT+VA
Sbjct: 310 -RVIMFLDTKHAVDRLTEHLLKSGVRAASLHGGKSQPQRTRTLTQFKNGHVNVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 369 ARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRAMTRLMALAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/334 (35%), Positives = 178/334 (53%), Gaps = 2/334 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL++ GYVN T +Q   +   +  +D+L  AQTG+GKT AF L +   L AE+ R +P 
Sbjct: 15  KALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPILHRL-AEDRRPAPR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +   L ++PTRELA Q+    +      G+ VAV  GGV    + R L  G  ++V TP
Sbjct: 74  RSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQMRALAGGVDVLVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH++ K + +  ++  VLDEAD+MLD+GF   I  I+   PK+R+ L FSAT+   
Sbjct: 134 GRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPKRRQNLFFSATMPAE 193

Query: 193 ITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           I  L       + ++V +   +     I+ R + V    +   +  +      K  IVF 
Sbjct: 194 IEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAELFDDASFKRVIVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R  + L +   +  ++ G+ SQ +R  AL   + G  R  +ATD+AARGID+ 
Sbjct: 254 RTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRALVATDIAARGIDID 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  V+  EL + PE  +HR GRT RAG  G +V
Sbjct: 314 AVSHVVQFELPNVPEAYVHRIGRTARAGADGSAV 347


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 181/329 (55%), Gaps = 9/329 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLA 77
           G+   +++Q+  + P ++ +D +  AQ+G+GKT  F + AL S  ++  +       P  
Sbjct: 63  GFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQSVDVSIKN-------PQV 115

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + ++PTRELA Q+ + +  L     V V   +G  ++  + R L+ G HI  GTPGR+ D
Sbjct: 116 IILSPTRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRRLEQGVHIASGTPGRVID 175

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  K LN   +K ++LDEADEML LGF+  I  +    P   ++++ SAT++  + ++ 
Sbjct: 176 LISRKALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPATQIVLVSATLTQDVVSMT 235

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           + +  D VR+ +  +      I    V V   + +   + +I        A++FC+T++ 
Sbjct: 236 ERFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKSK 295

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  + E  F V +L G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LV
Sbjct: 296 VDALTNKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVLITTDILARGIDVQQVSLV 355

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L  + EN +HR GR+GR GRKG+++
Sbjct: 356 INYDLPMDRENYIHRIGRSGRFGRKGVAI 384


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 180/343 (52%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 202 YKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFS 261

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 262 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 321

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 322 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQT 381

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 382 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTH 441

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 442 GTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATA 501

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 502 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 544


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 177/332 (53%), Gaps = 2/332 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A ++RGY   T +Q   +   L  +DVL +AQTG+GKT AF L +   L       +  
Sbjct: 14  KAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPILQRLAFVGG--ARG 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QV   +        +  AV  GGV    +   L+ G  ++V TP
Sbjct: 72  RQVRTLVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEALEPGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   ++ S L+ +VLDEAD MLD+GF  D+  I++  P  R+ LMFSAT S  
Sbjct: 132 GRLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDMRRIIEMLPINRQTLMFSATFSQE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LA  Y  + V V++A  N     ++ +A  V    + + ++++ R      A+VFC 
Sbjct: 192 IRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEHKSDLLMHLFREGEWGQALVFCR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++ +K L    F    + G  SQ  R  AL   + G  ++ IATD+AARG+D+  
Sbjct: 252 TKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLLIATDLAARGLDIDQ 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           L  V++ +L S P++ +HR GRTGRAG  G S
Sbjct: 312 LPEVVNFDLPSVPQDYVHRIGRTGRAGATGRS 343


>gi|282863805|ref|ZP_06272863.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561506|gb|EFB67050.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 492

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 196/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 69  GLPEPLLAALGAEGMSVPFPIQAATLPNTLVGRDVLGRGRTGSGKTLAFGLAL---LART 125

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ G+
Sbjct: 126 AGRRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLAAVVGGMSIGRQASALRGGS 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD  SP  +RML 
Sbjct: 186 EIVVATPGRLKDLIDRGDCRLDQVDITVLDEADQMADMGFMPQVTALLDQVSPGGQRML- 244

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++   +   + +++  + V  +D+      I    G 
Sbjct: 245 FSATLDRNVDLLVRRYLTDPVVHSVDPSSATVTTMEHHVLHVHGADKQATTTEIAAREG- 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 304 -RVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKSGHVTVLVATNVA 362

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  +A 
Sbjct: 363 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRSMTRLMSDAG 422

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           +       P V  +R  +A+
Sbjct: 423 IR------PQVTQVRSGEAE 436


>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
 gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
          Length = 432

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 184/349 (52%), Gaps = 9/349 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +  
Sbjct: 15  QALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRV------HTDV 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L IAPTREL  Q+  E + + +   V +   IGG ++  + + L     +++GTP
Sbjct: 69  HQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRRPQVILGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   
Sbjct: 129 GRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLFSATIPDK 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK Y      V    ++     ID R  ++   ++   ++ ++       AIVFC+
Sbjct: 189 IRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQRLIKMIEEDNPFLAIVFCN 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  
Sbjct: 249 KREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
           +  V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 309 ITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357


>gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
 gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
          Length = 488

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 184/342 (53%), Gaps = 9/342 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 97  GFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNA 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G 
Sbjct: 156 QPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGV 215

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +
Sbjct: 216 EIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYW 275

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA+N+  D  +V I SE  +  H+ + +  +L + S + N +VN+L    
Sbjct: 276 SATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEIL-SESQKYNKLVNLLEDIM 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATD
Sbjct: 335 DGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+    ++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 395 VAARGL----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 432


>gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior]
          Length = 789

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
            P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF   L L  T L 
Sbjct: 368 FPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLP 427

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 428 KIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRM 487

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 488 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 547

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 548 DNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTER 607

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       + L +  +    L G  
Sbjct: 608 TEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGK 667

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 668 GQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 727

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 728 GKAGLAI 734


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 188/341 (55%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL E+ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLL-ESG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +      AL +APTRELA Q+   ++     T + VA   GG  +  +   L+ G  I
Sbjct: 68  RSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALEGGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    +++++++ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFIHAVRKIMMDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 187/341 (54%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF L  A   L +  R  P 
Sbjct: 14  DAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAF-LIPAIQYLLDFPRRDPG 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + L + PTRELA Q+  + E L  +T + + V  GG++    +   +    I++ TP
Sbjct: 73  FARV-LVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIFEKNNDILIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +R+  +FSAT+   
Sbjct: 132 GRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSATLEGD 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYHGAKNA 247
           ++   A+    D   +   S  ++ + I      V L+D    +   +VN L       A
Sbjct: 192 SVERFAEKTLNDPALLEAESSRKEKAKIHQ---WVHLADDYHHKLELLVNTLNGPDVTKA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+ IATDVAARG
Sbjct: 249 IVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRILIATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ ++
Sbjct: 309 IDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLV 349


>gi|256826013|ref|YP_003149973.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689406|gb|ACV07208.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 573

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/368 (34%), Positives = 188/368 (51%), Gaps = 9/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L   G    T +Q A L   L  +DVL   +TGSGKT+AFG+ L + L A 
Sbjct: 9   GVPTSLTSVLERSGITTPTPIQTATLPDSLAGRDVLGRGRTGSGKTLAFGVPLVARLAA- 67

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            DR  PAS  P +L +APTREL +Q+ R +  L A  G+      GGV  + +   L+ G
Sbjct: 68  -DRRRPASGRPRSLILAPTRELVLQIERAIAPLAAAEGLSTTTIFGGVGQNPQVNALRKG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+  PGRL D I     ++   + V+LDEAD M DLGF   ++ +L ++P+  + L+
Sbjct: 127 VDIVLACPGRLEDLIGQGHCDLRDAQIVILDEADHMADLGFLPGVKRLLSATPRDGQKLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +   +  + V     S     + + +  + V   D+D+ + ++LR   A
Sbjct: 187 FSATLDGGIKVIVDRFLNNPVTHEADSAQSPVATMTHHVLEV---DKDSKL-SVLRDLAA 242

Query: 245 K--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+    +  K L  +    V L G LSQ  R   L    +G A+  +ATD
Sbjct: 243 APGRTVVFTRTKYGAKKLAKQLTANGVPSVDLHGNLSQNARQRNLAAFSEGTAQTLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGI + D+ LV+HA+  +  +  LHRSGRT RAG +G  V +     +   + L R 
Sbjct: 303 IAARGIHVDDIALVVHADPPAEHKAYLHRSGRTARAGAEGTVVTIAMPEQRGEVKTLMRA 362

Query: 363 ANVSVVWE 370
           A +  V E
Sbjct: 363 AKIRPVTE 370


>gi|315182351|gb|ADT89264.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           furnissii NCTC 11218]
          Length = 442

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 185/351 (52%), Gaps = 23/351 (6%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD+L S++TGSGKT+AF L +    L    +   A  P  + + PTRELA QV  EL  +
Sbjct: 39  KDLLASSKTGSGKTLAFLLPMLHKALKT--KALSARDPRGVILVPTRELAKQVYGELRTM 96

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            +       +  GG + + + + L+ G   +V TPGRL DH+  + L +  L+ ++LDEA
Sbjct: 97  LSGLSYTATLITGGENFNDQVKALRRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEA 156

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQ 215
           D MLDLGF   +  I +++  +RR  L+FSAT+  A +  +A     DA  + +   N Q
Sbjct: 157 DRMLDLGFAPQLRHIHNAAKHRRRQTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQ 216

Query: 216 HSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           H DI  R  L    D   A+++ +L     +  I+F +TR    R T  L E   + VAL
Sbjct: 217 HKDITQRFYLCDHLDHKEALLDRVLDDADYRQVIIFTATRDDTERLTAKLNERKLKAVAL 276

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           SG L+Q +R+  +        ++ + TDVA+RG+D+ ++  VI+ ++  + E  +HR GR
Sbjct: 277 SGSLNQVQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGR 336

Query: 335 TGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           TGRAG KG ++ ++ P++                 W+    VEA  ++D Q
Sbjct: 337 TGRAGNKGDAISLVGPKD-----------------WDSFKRVEAYLKQDIQ 370


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 370 LPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 429

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +   A  G  V   +GG S+  +   L+
Sbjct: 430 RLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYSLR 489

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + +  S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 490 NGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQK 549

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+ PA+  +A+ Y +    V I +      
Sbjct: 550 PDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEAVD 609

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 610 TVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 669

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N EN  HR GRT
Sbjct: 670 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHRIGRT 729

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 730 GRAGKSGIAITFL 742


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 192/370 (51%), Gaps = 22/370 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT  F   + S   AE  R  PA +     
Sbjct: 196 YTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILSASFAEGPRPPPAQSSAGGY 255

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P AL +APTREL  Q+  E      ++ V  AV  GG  ++++ R ++ G  +
Sbjct: 256 GRARKAYPTALILAPTRELVSQIHDEARKFAYRSWVRPAVVYGGADINQQLRLIERGCDL 315

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRML 183
           +  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I+      S   R+ L
Sbjct: 316 LSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPSTADRQTL 375

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LAK++ KD V +++        +I  +   V   D+ + +++IL    
Sbjct: 376 MFSATFPRDIQMLAKDFLKDYVFLSVGRVGSTSENITQKIEYVEDLDKRSVLLDILASQP 435

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            ++    +VF  T+      +  L  +     ++ G+ +Q+ER  ALQ  R GR  + +A
Sbjct: 436 KEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIHGDRTQREREMALQTFRTGRTPIMVA 495

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           T VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G+S        +N+ R   
Sbjct: 496 TAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVSTAFFNRGNKNIVRDLV 555

Query: 358 RLFREANVSV 367
            L REAN  +
Sbjct: 556 ELLREANQEI 565


>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 613

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 186/347 (53%), Gaps = 6/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L   
Sbjct: 7   NLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQRLASG 66

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  ++F        L + PTRELA QV   L        +   V  GGV +  +   ++
Sbjct: 67  TAPKNKFG-GKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIARIE 125

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G  ++V TPGRL D + G+G +++S ++ ++LDEAD MLD+GF  D++ +L   PK ++
Sbjct: 126 KGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPKDKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I++ 
Sbjct: 185 SLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHIIQE 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  +AT
Sbjct: 245 NNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRALVAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++
Sbjct: 305 DIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLV 351


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 175/336 (52%), Gaps = 10/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  A   +  N R +       +
Sbjct: 75  GFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIG-ALQRIDPNQRKTQV-----I 128

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +AP RELA Q+   ++ +     +    CIGG S    R   + G HI++ TPGRL D 
Sbjct: 129 ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQGVHIIIATPGRLIDM 188

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P   ++ +FSAT    I  L+K
Sbjct: 189 MKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSK 248

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRA 255
            + +D     I  +  Q +    R   +A+   D     +V + +      +I+FC+++ 
Sbjct: 249 QFLRDGT-AKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLVELYKNLTVSQSILFCNSKK 307

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V      L    F V  +  ++ Q+ER   +Q  + G AR+ ++TD+  RGID+  L L
Sbjct: 308 TVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSL 367

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VI+ E     E  +HR GR GR GRKG+++ ++ Q 
Sbjct: 368 VINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQ 403


>gi|291231214|ref|XP_002735561.1| PREDICTED: Ddx49-A-prov protein-like [Saccoglossus kowalevskii]
          Length = 445

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 188/365 (51%), Gaps = 11/365 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T +Q   +   L   D L  A+TGSGKT AF L +   L  +           AL
Sbjct: 31  GITKPTPIQYYCIPQILEGVDCLGCAKTGSGKTAAFALPILQKLCED------PYGIYAL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +   L    G+  AV IGG  V R+  DL +  H+V+ TPGRL DH
Sbjct: 85  VLTPTRELAFQIAEQFRILGKPIGLKDAVIIGGRDVMRQGMDLADKPHVVIATPGRLADH 144

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           I      ++  +K +VLDEAD +L+  F +D++ I D+ P+KR+ L+FSAT++  +  L 
Sbjct: 145 INSSNTFSLKKIKFLVLDEADRLLEDTFAEDLQVIFDALPEKRQTLLFSATLTDKLEKLQ 204

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK----NAIVFCST 253
                        +E      +D + VL+    RD  +V+IL+   ++    + I+F +T
Sbjct: 205 TLALNKPFFWQSKAEIATVEQLDQKYVLIPAKVRDAYLVHILQKICSETEDYSMIIFSNT 264

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
             +      +L    F    L   + Q++R  +L   + GR R+ +ATDVA+RG+D+P +
Sbjct: 265 CKNCQSLYLMLKALEFPCTPLHSMIPQRDRIASLAQFKSGRVRILLATDVASRGLDIPIV 324

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           +LV++  +  +P + +HR GRT RAGR GM++ ++ Q   +  E + ++ N  +   P  
Sbjct: 325 QLVVNHNVPWSPIDYVHRVGRTARAGRGGMALTLMTQYDVKLIEAIEKQINTKLTEYPVD 384

Query: 374 SVEAI 378
             E +
Sbjct: 385 DKEVL 389


>gi|198425972|ref|XP_002127372.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Ciona intestinalis]
          Length = 790

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 188/374 (50%), Gaps = 28/374 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E +   GY + T +Q   +      +D++  A+TGSGKT AF + L +  T L
Sbjct: 368 DLPPEIVEVIHRIGYKDPTPIQRQAIPIGFLNRDIIGVAETGSGKTAAFLIPLLAWITSL 427

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R   A   P AL +APTRELA Q+  E      + G+     IGG+S   +   L+
Sbjct: 428 PKIERLEDADKGPYALILAPTRELAQQIEEETIKFGKELGIRTVAVIGGLSREDQGFKLR 487

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + + +S    VVLDEAD M+D+GF  D++ ILD  P     
Sbjct: 488 MGCEIVIATPGRLIDVLENRYIVLSQCTYVVLDEADRMIDMGFEPDVQKILDHMPVTNQK 547

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+  A+  LA++Y +    V I S  +   
Sbjct: 548 PDDESMEDKIIMKSNFLTKHKYRQTVMFTATMPVAVERLARSYLRRPAIVYIGSAGKPIE 607

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +     LV  +++   ++ +L        IVF + +       K L +  +    L G 
Sbjct: 608 RVKQIVYLVKENEKRKKLLGLLEKGITPPVIVFVNQKKGCDVLAKSLEKMGYNSTTLHGG 667

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q+ R  AL  +++G   + +ATDVA RGID+ D+ L+I+ +++ N E+  HR GRTGR
Sbjct: 668 KGQEHRELALSGLKNGSKDILVATDVAGRGIDIQDVTLIINFDMAKNIEDYTHRIGRTGR 727

Query: 338 AGRKGMSVFVIPQN 351
           AG+ G +V  + Q+
Sbjct: 728 AGKTGTAVTFLTQS 741


>gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 667

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 178/338 (52%), Gaps = 9/338 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+ F L L    L    R        PL L + 
Sbjct: 242 TQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLVMICLEGELRCPIEEGEGPLGLIVC 301

Query: 82  PTRELAVQVGRELEWLYA-----KTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRL 135
           P+RELA Q    +++        K  ++ ++C IGGVS   + R++Q G H+VV TPGRL
Sbjct: 302 PSRELATQTHNVIKYFCEFLHQDKYPLLRSLCMIGGVSTFDQGREIQKGMHMVVATPGRL 361

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K + +   + +  DEAD ++DLGF +++   LD   ++R+ L+FSAT+   I  
Sbjct: 362 NDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFSRQRQTLLFSATMPKKIQE 421

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            AK+   + + +N+      + D+      V    + + ++ +L+  G    ++FC  + 
Sbjct: 422 FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEELKLSYLLEVLQKTGPP-VLIFCENKK 480

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L       +A+ G L Q ER  A+ + R+G+  + + TDVA++G+D P +E 
Sbjct: 481 DVDDVHEYLLLKGVNAIAIHGNLGQTERQEAINLFREGKKDILVGTDVASKGLDFPSIEH 540

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           VI+ ++  + EN +HR GRTGR G+ G++   I +N +
Sbjct: 541 VINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQE 578


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 180/331 (54%), Gaps = 14/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L    L   D  +  +   AL
Sbjct: 36  GYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCL----LQACDPHTRETQ--AL 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ       +    G+    CIGG S   + R L++G HIV GTPGR+ D 
Sbjct: 90  ILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRRLESGVHIVSGTPGRVFDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR K L ++ LK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + +
Sbjct: 150 IRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPP-LQIILVSATLPADVLEMTE 208

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCSTR 254
            +  +   + +    R    +D  +   V++ +  N    ++  + +    +A+VFC+TR
Sbjct: 209 KFMTEPTSILV---KRDEITVDSVKQYFVSVDEEKNKFDVLMELYDSLTIAHAVVFCNTR 265

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  K +    F V A+ G++ Q ER   ++  R+G +RV I TD+ ARGID+  + 
Sbjct: 266 KKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFRNGHSRVLITTDLWARGIDVERVS 325

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LV+  +L    E  +HR GRTGR GR G+++
Sbjct: 326 LVLSYDLPLAREQYIHRIGRTGRMGRTGLAI 356


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 184/344 (53%), Gaps = 7/344 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I  AL+E GY  LT +Q   +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQILE 65

Query: 65  E---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +     RF+      AL +APTRELA Q+ + +      T +  A   GG  +  + R L
Sbjct: 66  KPKSRGRFNVR----ALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL +H+  K +++++++ +V DEAD MLD+GF  D+  ++       +
Sbjct: 122 EKGVDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNPQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT S  +  LA +  +   R+ +  EN     + +    V    +   +  ++  
Sbjct: 182 IMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSHVVYPVDQERKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  +VF + + + +   K L +   + V   G+ +Q  R  AL   ++G+ARV +AT
Sbjct: 242 KNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +VAARG+D+  L  V++ ++    E+ +HR GRTGRAG KG ++
Sbjct: 302 EVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAI 345


>gi|330951415|gb|EGH51675.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae Cit 7]
          Length = 385

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 6/297 (2%)

Query: 77  ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL + PTRELA QV +E+  L  ++  + V    GGVS   +   L++GAHI+VGTPGR+
Sbjct: 1   ALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGSLEHGAHIIVGTPGRI 60

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
             H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R+ L+FSAT    I  
Sbjct: 61  QQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQTLLFSATYPVGIKQ 120

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVFCST 253
           L+  + +D   V + +    H+D     +   +S   R  A+V +L +    + + FC T
Sbjct: 121 LSSKFMRDPQTVKVEA---LHADSQIEQIFYEISPEQRLEAVVKVLGHFRPTSCVAFCFT 177

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L       V L G+L Q++R   L M  +    V +ATDVAARG+D+  L
Sbjct: 178 KQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDAL 237

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           ++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  +       + W+
Sbjct: 238 DMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIEELQKAPLNWQ 294


>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 481

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 181/341 (53%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ ++GY   T VQ   +   L  +DVL  AQTG+GKT  F L L   L     R +PA 
Sbjct: 17  AVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQRL---ATRAAPAG 73

Query: 74  AP------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            P       AL + PTRELA Q+   +        +   +  GGV+++ +   L+ G  I
Sbjct: 74  VPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQIDALRRGVDI 133

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH++ K ++++ ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FSA
Sbjct: 134 LVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLPAKRQNLLFSA 193

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA         V +A  N +   +  R   V    +   + +++     +  
Sbjct: 194 TFSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSWRKRELLTHLVASGDWRQV 253

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF   ++  +R  + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 254 LVFTRMKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKAGTVRVLVATDIAARG 313

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ +L  V++ EL   PE+ +HR GRTGRAG  G ++ ++
Sbjct: 314 LDIEELPHVVNFELPHVPEDYVHRIGRTGRAGSTGEAISLV 354


>gi|332525439|ref|ZP_08401598.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108707|gb|EGJ09931.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 415

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/335 (37%), Positives = 179/335 (53%), Gaps = 11/335 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           A +E G+   T VQ+  + P L  +D++  A TGSGKT A+ LA+         E+ R +
Sbjct: 17  ACAELGFSIPTPVQQQAIPPALDGQDLVARAPTGSGKTAAYALAMLHRFDITPRESRRVT 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTRELAVQ G+ L  +  +    V VAV  GGVSV+ +   L+ GA +V
Sbjct: 77  -----RALLLVPTRELAVQAGQTLRAMAREMAEPVKVAVVFGGVSVNPQMMGLRGGAEVV 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L +  ++ +VLDEAD +LD GF D++E +L   P +R+ L+FSAT
Sbjct: 132 VATPGRLLDLVERNALKLGEVQLLVLDEADRLLDDGFADELERVLALLPAERQQLLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
               +  LA       V+V + A+      +I+  AV V  + R   +  +L  H     
Sbjct: 192 FPAPVQALATRLLHAPVQVAVDAAPEAGGPEIEQHAVEVDTAQRTPLLRRLLATHDWPRV 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +TR +       L        AL GELSQ  R+  L  +  GR RV +ATD+AARG
Sbjct: 252 LVFVATRHASEMVAAKLQRAGIAAAALHGELSQGARARVLAELAHGRLRVVLATDLAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           + +P L  V++ +L  +  +  HR GRT RAG +G
Sbjct: 312 LHIPALAAVVNYDLPRSAADYTHRIGRTARAGARG 346


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 180/337 (53%), Gaps = 3/337 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ I + + E+ Y+  T +Q       L+ KDV+  A+TGSGKT++F L  A   + +
Sbjct: 159 NFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISF-LIPAIIHILD 217

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTREL  Q+  E       T +    C GGV    + +D Q+G 
Sbjct: 218 TPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTSIKTVRCFGGVPQSCQMKDFQSGC 277

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I V TPGRL D I+    N+S    ++LDEAD ML++GF   ++ I+      R+ +M+
Sbjct: 278 DICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDRQTVMW 337

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           +AT   AI   A  +    +++NI + +   ++   + V V    DRD+ +  I++  G+
Sbjct: 338 TATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIVEVCQERDRDSKMNEIVKRIGS 397

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  ++F  T+ S       L +  ++V  + G+ +Q ER  AL   + G     IATD+
Sbjct: 398 EKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNYLIATDL 457

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           A+RG+D+ ++E+VI+ E+ S+ EN +HR GRTGR GR
Sbjct: 458 ASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGR 494


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L L    L +     
Sbjct: 12  ILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPL----LEKFSDMP 67

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P  A    AL + PTRELAVQV   +        +      GGV    +++ L +G  I+
Sbjct: 68  PIRAKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQRLIDGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + L+   L+ +VLDEAD MLD+GF +DI  IL+  PK+R+ L+FSAT
Sbjct: 128 VATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINKILERLPKERQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LAK   +  V ++++ EN     ID   + V    +   + ++++ +  K A+
Sbjct: 188 LSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITVDKDKKSALLSHMIKENEWKQAL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+   ++    L +      A+ G  SQ  R   L   + G   + +AT +AARGI
Sbjct: 248 IFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLLVATGIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ DL  VI+ +L    ++ +HR GRTGRAG  G ++
Sbjct: 308 DIDDLTRVINYDLPDQADDYVHRIGRTGRAGATGEAI 344


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 187/368 (50%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + ++G+   TS+Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 112 FPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSIVHINAQ- 170

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L +APTRELAVQ+ +E     + + +      GG    ++ RDL  G  
Sbjct: 171 PLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVE 230

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 231 ICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 290

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  L ++Y  D ++V + S      H+      V+     RD  I ++      
Sbjct: 291 ATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATAD 350

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             A  ++F ST+ +    T  L    +  +A+ G+  Q ER   L+  + G++ + +ATD
Sbjct: 351 PEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGKSPIMVATD 410

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RL 359
           VAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G +V     N  +      ++
Sbjct: 411 VAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKI 470

Query: 360 FREANVSV 367
            REAN ++
Sbjct: 471 MREANQTI 478


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 188/362 (51%), Gaps = 18/362 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+A         
Sbjct: 221 TPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGQFGRQRK 280

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TP
Sbjct: 281 AYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATP 340

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSAT 188
           GRL D I    +++ ++K +VLDEAD MLD+GF   I  I++     S + R+ LMFSAT
Sbjct: 341 GRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPSTQDRQTLMFSAT 400

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H     +
Sbjct: 401 FPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTL 460

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      +  L    F   ++ G+ +Q+ER  AL+  R+GR  + +AT VAARG+
Sbjct: 461 IFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGL 520

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     +  +   R    L +EAN 
Sbjct: 521 DIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELMELLKEANQ 580

Query: 366 SV 367
            +
Sbjct: 581 EI 582


>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 364

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 176/338 (52%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+       
Sbjct: 12  ILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAK 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V 
Sbjct: 72  GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S
Sbjct: 132 TPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFS 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF
Sbjct: 192 DDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+
Sbjct: 252 TRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L  V++ EL + PE+ +HR GRTGRA   G ++ ++
Sbjct: 312 EELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 364 LPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 423

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +   A  G  V   +GG S+  +   L+
Sbjct: 424 RLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYSLR 483

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + +  S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 484 NGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQK 543

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+ PA+  +A+ Y +    V I +      
Sbjct: 544 PDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEAVD 603

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 604 TVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 663

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N EN  HR GRT
Sbjct: 664 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHRIGRT 723

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 724 GRAGKSGIAITFL 736


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 189/354 (53%), Gaps = 10/354 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +P    + +AL +  +   T VQE  +   L+ +DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPILSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---E 117
           + + N    P +A   L ++PTRELA Q+ + ++   Y   GV      GG   +R   E
Sbjct: 63  IDSNN---YPDNAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQE 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA +V+ TPGRL  HI    +++S +   VLDEAD MLD+GF DDI  I    P
Sbjct: 120 VKSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + +MFSAT+   I  LA+   K+ V + +A  ++    I   A +   + +   I +
Sbjct: 180 KTCQTIMFSATMPDKINDLARTLLKNPVEIKLAV-SKPAEKIKQCAYICYEAQKLKIIED 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  IVFC ++  V +    L         +  +L Q +R   +   + G+  V
Sbjct: 239 IFKKGDLKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQLDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +ATD+ ARGID+ D+ +VI+ ++ ++ E+ +HR GRT RA R G ++ ++ Q+
Sbjct: 299 LVATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQD 352


>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 521

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+PQ I E + E  + N T +Q   +   L+  D++  A+TGSGKT +F L  A   ++ 
Sbjct: 91  NLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASF-LIPALMHISA 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P+ L ++PTRELA+Q          K G       GG   HR+   L+   
Sbjct: 150 QRKISENDGPIVLVLSPTRELALQTDEVAAQFCVKMGYKHVCIYGGEDRHRQINKLRFHP 209

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV  TPGRL D ++    N +    +VLDEAD MLD+GF   I  I+ S  K R   MF
Sbjct: 210 EIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLTKDRETFMF 269

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    I  LA ++  + + +++  E    ++ I    +L+   ++    V IL+ + +
Sbjct: 270 SATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVEILKENQS 329

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA-RVCIATDV 303
           K  I+F  T+ +V + +  L     + +++ G+ +QQER  AL   ++ R   V +ATDV
Sbjct: 330 KKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGGVLVATDV 389

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+ D++LV++ +   + E+ +HR GRT R  + G+++
Sbjct: 390 AARGLDVTDIDLVLNYDFPGDIEDYVHRIGRTARGEKTGVAI 431


>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
 gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
          Length = 437

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 175/332 (52%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  Y   T +QE  +   L  +D+L  A+TG+GKT AF L +   L   ++      
Sbjct: 15  AIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPILQKLYLRDESEKYPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA+Q+    + + +   +   V  GGV    +   ++ G  +++ TPG
Sbjct: 75  TIKALILAPTRELAMQIDETFQSMNSFVNLKSTVIFGGVRQGSQVTKIERGIDVLIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  +   L++SH++  VLDEAD MLD+GF +DI  I+   PK+R+ ++FSAT+   I
Sbjct: 135 RLSDLYKQGLLDLSHIEYFVLDEADRMLDMGFINDIRRIMKYIPKQRQTMLFSATLPKEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L      +  +V ++S       I      V  +++   ++ +L      NAIVF  T
Sbjct: 195 QHLIDEILNNPEKVMVSSGQMTVERIQQSLYYVDKANKAKLLIKLLENPQIYNAIVFVRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + + +   K L     +  A+ G+ SQ  R  AL   ++ + RV +ATD+AARGID+  L
Sbjct: 255 KRNANTLCKKLQRAGIEAEAIHGDKSQNARVRALNRFKEDKVRVLVATDIAARGIDVDHL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V++ +L    EN +HR GRT RAG  G ++
Sbjct: 315 THVVNFDLPEQAENYVHRIGRTARAGADGTAI 346


>gi|258651049|ref|YP_003200205.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258554274|gb|ACV77216.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 392

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+  G  +   +Q A L   L  +DVL   +TGSGKT+AF + L + L   
Sbjct: 19  GVPTTLLPALTALGAPSPFPIQAATLPATLAGRDVLGRGKTGSGKTIAFAIPLVARL--T 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P + P  L + PTRELA+QV R +E L    G+   V  GGV    +   L++G 
Sbjct: 77  GGRRVP-NRPRGLILLPTRELALQVARTVEPLAKAAGLRTMVVFGGVGYGNQTAALRSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+  PGRL D +  +  ++S ++  VLDEAD M DLGF   +  +L ++PK  + L+F
Sbjct: 136 DIVIACPGRLEDLVNQRACDLSGIEVTVLDEADHMADLGFLPVVRRLLRATPKVGQRLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+ L K +  D +   +  E      +++    V   +R   I  +    G  
Sbjct: 196 SATLDNGISVLVKEFLSDPILHAVDDETSPVEAMEHHIFAVDAGNRAQVIREL--AQGGG 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ S  ++   L ++    V L G LSQ  R   L     G A+V +ATD+AA
Sbjct: 254 RRLLFTRTKHSAKKWAAQLTKNGIPAVDLHGNLSQNARERNLAAFSAGSAKVLVATDIAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +ELV+H +  +  +  LHRSGRT RAG  G  + V+    +    +L ++A +
Sbjct: 314 RGIHVDGIELVVHLDPPTEHKAYLHRSGRTARAGAGGTVITVMLPEQRDDLRKLMKQAGI 373

Query: 366 S 366
           S
Sbjct: 374 S 374


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA A     
Sbjct: 207 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPASGQFS 266

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 267 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 326

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++         R+ 
Sbjct: 327 LLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQT 386

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 387 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 446

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 447 GTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 506

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 507 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 550


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 183/344 (53%), Gaps = 7/344 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+   TS+Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 117 FPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 175

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+ +E    + K+  +   C+ GGV   ++ R+L  GA
Sbjct: 176 PLLSPGDGPIVLVLAPTRELAVQIQKECS-KFGKSSRIRNTCVYGGVPRGQQIRELIRGA 234

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 235 EIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 294

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA++Y  D ++V I S      H+      V+     RD  + ++     
Sbjct: 295 SATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQ 354

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F ST+ +    T  L +  +  +A+ G+  Q+ER   L   R G + + +AT
Sbjct: 355 DKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVAT 414

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+  +  V++ ++  N E+ +HR GRTGRAG  G ++
Sbjct: 415 DVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAI 458


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 177/316 (56%), Gaps = 6/316 (1%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D++  AQTGSGKT++F L     + A+ D   P   P+AL +APTRELA Q+ +E  + +
Sbjct: 252 DLIGIAQTGSGKTLSFMLPALVHINAQ-DPVKPGEGPIALVLAPTRELANQI-QEQCFKF 309

Query: 99  AKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                + +VC+ GG     + ++L+NG  IV+ TPGRL D +    +++  +  +VLDEA
Sbjct: 310 GSKCKISSVCVYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEA 369

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIAS-ENRQ 215
           D MLD+GF   I  I+      R+ LMFSAT    +  LA ++   D + + I   EN  
Sbjct: 370 DRMLDMGFEPSIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNV 429

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           ++DID +  ++  S + + +  IL     +   I+F  T+      +K L     + + +
Sbjct: 430 NNDIDQQVEIIDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICI 489

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ SQ++R   + + + GR    IATDVA+RG+D+ D++LVI+ +     E+ +HR GR
Sbjct: 490 HGDKSQRDRDKVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGR 549

Query: 335 TGRAGRKGMSVFVIPQ 350
           TGRAG +G ++  + Q
Sbjct: 550 TGRAGAQGKAISFLDQ 565


>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
 gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
          Length = 413

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 17/342 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +D++  A TGSGKT+AFG+ AL   L  +      +     L ++PTRELA Q+   LE 
Sbjct: 25  RDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSRCLVLSPTRELAQQIAAVLEE 84

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             A  GV V    GG S   +   L++G  IVV TPGRL D +      +  +  +VLDE
Sbjct: 85  AGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQDFVDEGVCKLDQITYLVLDE 144

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA-------VRVNI 209
           AD MLDLGF   +  I+   P++R+ +MFSAT   ++  LA+ + +DA       +++ +
Sbjct: 145 ADRMLDLGFEPAVRAIVSHIPQERQTIMFSATWPTSVQKLAQEFIQDASPELISFLQITV 204

Query: 210 ASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGAK--NAIVFCSTRASVSRFTKVL 264
            SE+   ++ D   ++  L D  RD  +  +LR YH  K    +VF   +    R    L
Sbjct: 205 GSEDLS-ANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNRVLVFVLYKKEAVRVENFL 263

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  + V  + G+ SQQ R+ AL   +DG   + IATDVAARG+D+PD+E VI+      
Sbjct: 264 QKQGWNVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAARGLDIPDVEFVINYSFPLT 323

Query: 325 PENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
            E+ +HR GRTGRAG+KG +  F    +  R  E   + REA
Sbjct: 324 TEDYVHRIGRTGRAGKKGTAHTFFTTADKARAGELVNILREA 365


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 187/347 (53%), Gaps = 11/347 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I + ++   Y   T +Q   +   L  +D+L  A+TGSGKT AF + +    LA+   
Sbjct: 132 QSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQPP- 190

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 PLAL +APTRELA Q+ +E++ +  +      A+ +GG ++  +R +L+ G +I
Sbjct: 191 VRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQRSELRAGVNI 250

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR   H++    ++S +  VVLDEAD MLD+GF   I  ++ + P+K + L+FSA
Sbjct: 251 VVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLPQKHQTLLFSA 310

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
           T+   I TLA+ Y  + V+V +   +   +++      V+ S++ + ++ +L    ++  
Sbjct: 311 TMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLALLVEEASQAE 370

Query: 247 --------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF   +       + L     + VAL G  SQ ER  AL+  R+G   + 
Sbjct: 371 RCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALRDFRNGATNIL 430

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVA+RG+D+  +  VI+ +L    EN +HR GRTGRAG  G + 
Sbjct: 431 VATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQAT 477


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 180/346 (52%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ + ++   Y   T +Q   L   L  +D+L  A+TGSGKT +F + +    L +  
Sbjct: 144 PNILAD-IAHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQHCLNQPP 202

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGA 125
              P   P+AL +APTRELA Q+ RE+      +   V  ++ +GGV +  +R DL+NG 
Sbjct: 203 -LRPGDGPMALVLAPTRELAQQIEREVRAFSRSSSRNVRTSIVVGGVPMQEQRHDLRNGV 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGR  D ++    N+S +  VVLDEAD MLD+GF   I+ ++++ P + + L+F
Sbjct: 262 EVVVATPGRFIDLLQQSYTNLSRVSYVVLDEADRMLDMGFEPQIKEVMNNLPPRHQTLLF 321

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y    V V I + +   +++  R        + + +V ++    A 
Sbjct: 322 SATMPKEIEELARAYLNKPVTVKIGAVSTPTANVAQRLEHAPEGQKLDILVALISSEVAA 381

Query: 246 NA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            A         IVF   +         L E      AL G L Q ER  AL+    G  +
Sbjct: 382 EASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAALRDFAKGHIK 441

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           V +ATD+A+RG+D+  +  VI+ +L    E+ +HR GRTGRAG KG
Sbjct: 442 VLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKG 487


>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 431

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ + L+   Y+N T VQ   +   L  +D+L  A TGSGKT AF L +   L   +
Sbjct: 21  IPELL-KRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKTAAFALPMLQKLAKSS 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV    +      K  + +    GGVS + +   ++ G
Sbjct: 80  AKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKPRLKIEAVFGGVSANTQMLAMRGG 139

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L   PK ++ L+
Sbjct: 140 ADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKHKQTLL 199

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL  N     V + I SE  + + +  +   V  + +   + ++++ +  
Sbjct: 200 FSATFPEEVKTLTDNLLSTPVEIQIQSE--EQTTLKQQVYTVNRNRKTALLAHLIKENDW 257

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF S + + +R  + LA+          + SQ  R+  L+  ++G   V IATD+A
Sbjct: 258 RQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETHVLIATDIA 317

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +
Sbjct: 318 ARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHD 364


>gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 449

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 189/343 (55%), Gaps = 6/343 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           I  A++E GY   T +Q   +   L+ K+++ +AQTGSGKT +F L +   L A E  R 
Sbjct: 12  ILNAVTELGYTTPTPIQAEAIPLALKGKNLIAAAQTGSGKTASFVLPILELLSAGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
             A A   L + PTRELAVQV + +E LY K   + A+ I GGV    +++ L +G  IV
Sbjct: 72  KRARA---LVLTPTRELAVQVCKSIE-LYGKHLNLNAIAIYGGVDYAPQKQALIDGVDIV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + ++      +VLDEAD MLD+GF +DI  I+D+ P++R+ L+FSAT
Sbjct: 128 VATPGRLRDLYTQRAIHFDETTLLVLDEADRMLDMGFIEDITKIIDTLPEQRQSLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LAK    DA++++   EN    +I+     V    +   + +++       A+
Sbjct: 188 LSRQVRELAKETVCDAIQLSFNKENEAKPNIEQWITTVDKDKKSALLSHLINEQNWPQAL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+   ++    L +   +   +    +Q  R   L   + G+ R  I+T ++ARGI
Sbjct: 248 IFIETKHGAAKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKIRYLISTGISARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ +L LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++
Sbjct: 308 DIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSKD 350


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 180/343 (52%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 195 YKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFS 254

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 255 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 314

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 315 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQT 374

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 375 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHTH 434

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT 
Sbjct: 435 GTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNGRCPILVATA 494

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 495 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 537


>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 426

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 180/339 (53%), Gaps = 4/339 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E  Y   T +Q   +   L  KD+L  A TGSGKT AF L L   LL++  +    + 
Sbjct: 22  LVELDYQVPTPIQAQTIGSILAGKDLLAGANTGSGKTAAFALPLLHALLSKPLKPLKGNG 81

Query: 75  PLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             AL + PTRELA QV    +   +++   + V    GGVSV+ +   L+ GA IVV TP
Sbjct: 82  VRALVLVPTRELAKQVADSFKSYAVHSNGAIKVVAAFGGVSVNTQMLALRGGADIVVATP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    L ++ +  +VLDEAD ML LGF D+I  IL   PKK++ L+FSAT    
Sbjct: 142 GRLLDLLSSNALKLADVSTLVLDEADRMLSLGFTDEIGQILGLLPKKKQTLLFSATFPEE 201

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L        + + +  +N + S +  R + V    +   + ++L  H  +  ++F  
Sbjct: 202 VRQLTDALLNSPLEIQL--QNPESSTLVQRVMTVNREKKTALLAHLLNEHQWRQVLIFVG 259

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + S +   + LA+         G+ +Q  RS  L+  + G  +V IATD+AARG+D+  
Sbjct: 260 AKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQVLIATDIAARGLDIEK 319

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L +VI+ +L  +P + +HR GR+GRAG  G+++ ++  +
Sbjct: 320 LPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLLSHD 358


>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 660

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/392 (32%), Positives = 205/392 (52%), Gaps = 24/392 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +   L 
Sbjct: 55  FDLLPNTV-EALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPILEKLA 113

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                N++      P A+   PTRELA+QV R++    +K G VV    GGV+   + R 
Sbjct: 114 RTTKSNEQPVRGRGPAAVIFCPTRELAIQV-RDVIAGISK-GFVVTALYGGVAYSTQERA 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           L +G  +VV TPGR  D +  + L    +K V LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 172 LYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVAEQN 231

Query: 180 --------RRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                    + L+FSAT+   + T   + +N  K+ + +      R  + I +       
Sbjct: 232 GSTEGNPNHQTLLFSATVPEWVHTCSFIPRN--KEFIDMVGQGTMRAANTIKFYRRKCHF 289

Query: 229 SDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           S+    + ++++ +  ++   +VF +T+      +  +         L G++ Q++R + 
Sbjct: 290 SEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLS--INNTKLDSQCLHGDMQQEQREST 347

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V 
Sbjct: 348 MKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVL 407

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           +     +   ER+ R A +     PAP+ + I
Sbjct: 408 LHQPKDEYIVERIERHAKIKFEVLPAPTRDEI 439


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 108/330 (32%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F +++  T+       S ++   AL
Sbjct: 45  GFEKPSAIQQRAIKPAVQGRDVIAQSQSGTGKTAVFSISILQTI------NSTSNETQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA Q  + +  L     V    CIGG S+  + R L  G  +V GTPGR+ D 
Sbjct: 99  VISPTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRRLDYGVQVVSGTPGRIFDM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +V+DEADEML+ GF+D I  I    P   ++L+ SAT+   +  L  
Sbjct: 159 IRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLPPSTQVLVVSATMPQDVLDLTT 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  + V+V +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 219 KFMNEPVKVLVKRDELTLEGI--KQFFVAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKR 276

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q+ER   +Q  R G +RV I TD+  RG+D+  + L
Sbjct: 277 KVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVLITTDIWGRGLDVQQVSL 336

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI  +L +N E  +HR GR+GR GRKG+++
Sbjct: 337 VICYDLPNNRELYIHRIGRSGRFGRKGVAI 366


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 189/341 (55%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L +   LL ++ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARRGHDIFATAQTGTGKTAAFSLPMIQRLL-DSG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +      AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG  I
Sbjct: 68  RNASRKTARALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISALENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA++  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNVLARDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 191/365 (52%), Gaps = 7/365 (1%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+ F  +   PQ++ +AL + G+   T++Q  ++   +  +D+L SA TG+GKT AF L 
Sbjct: 1   MRTFAELELDPQLL-QALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L+ +  R  P  A  AL + PTRELA+Q+  +   L   TG+ +    GG+S    
Sbjct: 60  LLQHLI-DFPRQKPGPA-RALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQEH 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L     IVV TPGRL +++  +  +   ++++VLDEAD MLD+GF   ++ +     
Sbjct: 118 AEILGKTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSECR 177

Query: 178 KKRRMLMFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +++ ++FSAT+    I    K    D V V      R+   I             NA++
Sbjct: 178 WRKQSMLFSATLEGRGIEGFKKTLLTDPVEVEAEPPRRERKKITQWYYRCDDMTHKNALL 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    AK AI+F  TR  ++   + L     +   L GE+ Q +R+ A++    G   
Sbjct: 238 KSILTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEIN 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD++ VI+ +L    +  LHR GRT RAG+KG ++ ++  + Q   
Sbjct: 298 VLLATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMM 357

Query: 357 ERLFR 361
           +R+ R
Sbjct: 358 DRICR 362


>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 498

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 175/341 (51%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E G+   T +Q   + P L  +DVL  A TGSGKT AF L +   L+++     P 
Sbjct: 16  QGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPILHQLMSK-----PR 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+   L+ +   T +  A   GGV +  +    ++G  ++V TP
Sbjct: 71  GNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHAFRSGVDVIVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISP 191
           GRL DH R     +  L+ +VLDEAD MLD+GF  +I+ IL   P +KR+ L FSAT+ P
Sbjct: 131 GRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRKRQTLFFSATMPP 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  L +      V +N+  +      I      V+   +   +V +L+      A+VF 
Sbjct: 191 PIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALLKRGDMPQALVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R    L     +   + G  SQ +R+ AL   +DG  +V +ATD+AARGID+ 
Sbjct: 251 RTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLVATDIAARGIDVE 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
            L  V++ ++    E+ +HR GRT RA   G +  FV P+ 
Sbjct: 311 ALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEE 351


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA A     
Sbjct: 206 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPASGQFS 265

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 266 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 325

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++         R+ 
Sbjct: 326 LLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQT 385

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 386 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 445

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 446 GTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 505

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 506 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 549


>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 583

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 148/549 (26%), Positives = 261/549 (47%), Gaps = 39/549 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   + +QE  +   L+  DVL  AQTGSGKT AF L L + +  +        
Sbjct: 20  ALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLNNIDLK------LK 73

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P  + + PTRELA+Q+      L  Y K   ++A+  GG +   + + L+    IVVGT
Sbjct: 74  LPQIIILTPTRELALQIKFACCSLSKYIKEINIIALY-GGQNYSIQIKSLKRNPQIVVGT 132

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D +  K LN+S + + VLDEADEML +GF +D+E I   S K+ + ++FSAT+  
Sbjct: 133 PGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQTILFSATMPA 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  + K + K    + I +      +I     +V    +  A++  L        I+F 
Sbjct: 193 AIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIFDAVIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +    + VL ++ +   +L+G+++Q  R   L   + G   + +ATDVAARG+D+ 
Sbjct: 253 RTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVAARGLDVD 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ ++  + E+ +HR GRTGRAGR G ++  +    ++    + R     +    
Sbjct: 313 RISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIKEKLSQIK 372

Query: 372 APSVEAIRERDAQRILQ------DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            PSVE + ++      +      + L L+  Q    K++   +   D + I+A  L++ +
Sbjct: 373 LPSVELLCKKRLNNFSEKIKNQINSLDLNKYQNLLSKIIS-FIGISDVKIISAALLKVAQ 431

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----------SWFSLSVGS 475
                P  I+P       D F + ++   +     +  K            S +   +G 
Sbjct: 432 KN--KPLIISP-------DNFFNKNKKINLLINKNNKRKKLNIIKNKKKSISLYKAEIGK 482

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGI 531
           K   E++ ++  +     I    IG+I++  + + +E+      + + +L ++    K +
Sbjct: 483 KDGIESKHIVRTMINLGKIKSNDIGSIKIFFNYSTIEIYKKIPLNLLSILSKSTIFKKSL 542

Query: 532 QLKYLGGEK 540
            LK L   K
Sbjct: 543 NLKLLNHNK 551


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 185/344 (53%), Gaps = 7/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L + GYV  T +Q   +   L+  DV   AQTG+GKT +F L + + L     
Sbjct: 10  PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R      P  L + PTRELA QV    E       + VA+ IGG+    + + L+ GA +
Sbjct: 69  R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++ TPGR+ DH     L +++++ +V+DEAD MLD+GF   I+ I    P  R+ L+FSA
Sbjct: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDR-DNAIVNILRYHGA 244
           T++  +  +++N+ ++  R+ + + +     I+  + A     S +       +      
Sbjct: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KN I+FC+ + +V      L +  F V A+ G + Q+ R   L   ++G  ++ +A+D+A
Sbjct: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+PD+  V + ++ +  EN +HR GRTGRAGR G +  ++
Sbjct: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 195/379 (51%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G AL+E      Y   T VQ+  +   L  +D++  AQTGSGKT AF   + + ++   
Sbjct: 152 LGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPIIAGIMRNT 211

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P     + PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  VH + R+++
Sbjct: 212 PPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPVHNQLREME 271

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 272 RGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVEQMDMPPAG 331

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  LA ++  + + + +         I  R   V   D+ + ++++
Sbjct: 332 ERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQDVDKRSMLMDL 391

Query: 239 LRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +    A          +VF  T+         L    F    + G+ SQQER +AL+  R
Sbjct: 392 IHAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQEREHALRSFR 451

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G++       
Sbjct: 452 TGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGVATAFFNEK 511

Query: 349 PQNMQRRAERLFREANVSV 367
            Q + R    L  E+N  V
Sbjct: 512 DQALARPLTELMTESNQEV 530


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 196/349 (56%), Gaps = 11/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF + + + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVVNRLL 72

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              A  DR      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  
Sbjct: 73  NRPALADR--KPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 121 LQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ 
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLG 250

Query: 238 IL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  
Sbjct: 251 LLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
 gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
          Length = 527

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 134/388 (34%), Positives = 191/388 (49%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIAS---ENRQHSDI------DYRAVLVALSDRDNAIVNILRYHGA 244
               K++ K++    IA    E  Q SD+      D R +L A  DRD  ++  LR +  
Sbjct: 192 ----KDFIKESSIFPIARDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/379 (33%), Positives = 203/379 (53%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEAL+       YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++ + 
Sbjct: 166 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 225

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  ++++ R+L+
Sbjct: 226 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPINQQLRELE 285

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+ 
Sbjct: 286 RGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 345

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++
Sbjct: 346 VRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDL 405

Query: 239 L---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L   R +G +      +VF  T+         L  + F   ++ G+ +QQER  AL+  +
Sbjct: 406 LHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFK 465

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++       
Sbjct: 466 SGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDG 525

Query: 351 --NMQRRAERLFREANVSV 367
             ++ R    L +EAN  V
Sbjct: 526 NTSLARPLAELMQEANQEV 544


>gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes
           195]
 gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
           ethenogenes 195]
          Length = 560

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 173/330 (52%), Gaps = 6/330 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L   DV+  AQTG+GKT A+ L +   +L+     +P      L
Sbjct: 20  GYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLS-----TPRGRVRTL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+      L  +  +      GGV++ ++ R L++G  +VV  PGRL DH
Sbjct: 75  VLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    ++I  ++ +++DEAD M D+GF+ DI+ IL    +  + L+FSAT+ P +  L  
Sbjct: 135 IWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTL 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
             Q + V + I ++    S + +    V    +   ++ IL+    K+ ++F  T+    
Sbjct: 195 ETQTNPVTIQIGTQA-PASSVSHSVYPVKNHQKTPLLIEILKTTETKSVLIFARTKYGAE 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                ++   F   +L G LSQ  R   ++  R G  ++ +ATD+AARG+D+  +  VI+
Sbjct: 254 NLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++   PE+  HR GRTGR  R G ++ ++
Sbjct: 314 YDMPDTPEDYTHRIGRTGRFDRTGQALSLV 343


>gi|73996622|ref|XP_863146.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 8 [Canis familiaris]
          Length = 804

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 180/343 (52%), Gaps = 29/343 (8%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSPA-SAPLALAIAPTRELAVQVG 91
           L+ +D++  A+TGSGKT AF + L    T L + DR   +   P A+ +APTRELA Q+ 
Sbjct: 410 LQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIE 469

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
            E        G+     IGG+S   +   L+ G  IV+ TPGRL D +  + L +S    
Sbjct: 470 EETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTY 529

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSP--------------------------KKRRMLMF 185
           VVLDEAD M+D+GF  D++ IL+  P                          K R+ +MF
Sbjct: 530 VVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMF 589

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT+ PA+  LA++Y +    V I S  + H  ++ +  L++ S++   ++ IL      
Sbjct: 590 TATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDP 649

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F + +       K L +  +    L G   Q++R  AL  ++ G   + +ATDVA 
Sbjct: 650 PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAG 709

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+ +V++ +++ N E+ +HR GRTGRAG+ G+++  +
Sbjct: 710 RGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFL 752


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 187/352 (53%), Gaps = 7/352 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +Q+  +   L  +D++ +A+TG+GKT AF L     L           
Sbjct: 21  AVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALPTMDKLPYA----GKGE 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ + + PTRELA+Q+    E +  +T   V   +GGVS   + + L++G  I++ TPG
Sbjct: 77  GPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKKLRSGCDIIIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +R    ++  ++ +VLDEAD MLD+GF   +  I+D++P +R+ L+FSATI  + 
Sbjct: 137 RLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSERQTLLFSATIDRSQ 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +  +       + I+        +D   +     ++   +   +R  G    IVF  T
Sbjct: 197 DKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNAFIREKGGFRVIVFTKT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      T+ L +      A+  + SQ +R  AL+  R+G+  V +ATDV ARGID+P++
Sbjct: 257 KGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVATDVLARGIDVPEV 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERLFRE 362
           + V++ +L   PE+ +HR GRTGRAG  G +V FV P  +N+ R  ++   E
Sbjct: 317 DYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQKFIGE 368


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 187/366 (51%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +             EN R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + +++IL   G
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGAAG 437

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 438 TDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 497

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G+            A   F E
Sbjct: 498 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFNE 545

Query: 363 ANVSVV 368
            N+++ 
Sbjct: 546 KNINIT 551


>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
 gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 182/343 (53%), Gaps = 14/343 (4%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +   L    D F      
Sbjct: 18  SQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKL--SEDPF----GI 71

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TPGRL
Sbjct: 72  FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRL 131

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISP 191
            DHIR     +I  ++ +VLDEAD +L+ G   F  D++ IL++ P +R+ L+FSAT++ 
Sbjct: 132 ADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLLFSATLTD 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNA 247
            +  L              SE R    +D R +LV    +D  +V++++     H   + 
Sbjct: 192 TLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVHLIQKFQDEHEDWSI 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +T  +      +L E  F  VAL   + Q++R  AL   +    ++ IATDVAARG
Sbjct: 252 MIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIATDVAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q
Sbjct: 312 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQ 354


>gi|260769645|ref|ZP_05878578.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260614983|gb|EEX40169.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 442

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 185/351 (52%), Gaps = 23/351 (6%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD+L S++TGSGKT+AF L +    L    +   A  P  + + PTRELA QV  EL  +
Sbjct: 39  KDLLASSKTGSGKTLAFLLPMLHKALKT--KALSARDPRGVILVPTRELAKQVYGELRTM 96

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            +       +  GG + + + + L+ G   +V TPGRL DH+  + L +  L+ ++LDEA
Sbjct: 97  LSGLSYTATLITGGENFNDQVKALRRGPKFIVATPGRLADHLEHRSLFLEGLETLILDEA 156

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQKDAVRVNIASENRQ 215
           D MLDLGF   +  I +++  +RR  L+FSAT+  A +  +A     DA  + +   N Q
Sbjct: 157 DRMLDLGFAPQLRHIHNAAKHRRRQTLLFSATLDHAQVNDIAYEMLNDAKHIAVGGSNEQ 216

Query: 216 HSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           H DI  R  L    D   A+++ +L     +  I+F +TR    R T  L E   + VAL
Sbjct: 217 HKDITQRFYLCDHLDHKEALLDRVLDDADYRQVIIFTATRDDTERLTAKLNERKLKAVAL 276

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           SG L+Q +R+  +        ++ + TDVA+RG+D+ ++  VI+ ++  + E  +HR GR
Sbjct: 277 SGSLNQIQRNTIMSQFERAVFKILVTTDVASRGLDIANVTHVINFDMPKHTEEYVHRVGR 336

Query: 335 TGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           TGRAG KG ++ ++ P++                 W+    VEA  ++D Q
Sbjct: 337 TGRAGNKGDAISLVGPKD-----------------WDSFKRVEAYLKQDIQ 370


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 184/342 (53%), Gaps = 10/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRF 69
           +A+++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      F
Sbjct: 215 KAVAKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASSF 274

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S    P  L +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ 
Sbjct: 275 SELQEPEVLIVAPTRELINQIYMEARKFSYGTCVRPVVVYGGVSTGYQIREISRGCNVLC 334

Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLM 184
           GTPGRL D I RGK + +S L+  VLDEAD MLD+GF  D+  ++ S   P K  R+ LM
Sbjct: 335 GTPGRLLDVIGRGK-IGLSKLRYFVLDEADRMLDMGFEPDMRRLVGSPGMPTKEHRQTLM 393

Query: 185 FSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  +A ++ K D + + +       SD++   V V    +   ++++L+  G
Sbjct: 394 FSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKREQLLDLLKTTG 453

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT V
Sbjct: 454 TERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADFRSGKCPVLVATSV 513

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+PD+  V+  +L +N +  +HR GRTGR G  G +V
Sbjct: 514 AARGLDVPDVLNVVSFDLPNNIDEYVHRIGRTGRCGNTGRAV 555


>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 445

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/342 (35%), Positives = 184/342 (53%), Gaps = 6/342 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L     +++   R     
Sbjct: 15  TLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIIST--RALSKR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV  +L  L A T       +GG + + + + L    H VV TPG
Sbjct: 73  DPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLLARDPHFVVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-MLMFSATISPA 192
           RL DH+    L+++ L+ ++LDEAD MLDLGF + ++ I  ++  KRR  LMFSAT+   
Sbjct: 133 RLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRRQTLMFSATLDHG 192

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVF 250
            I+ +A    K    V+I + N ++ DI  R  L    D   A+++ IL     K  I+F
Sbjct: 193 LISNIAAELLKSPEHVDIGAGNIENQDITQRIYLADHLDHKEALLDSILNNETHKQIIIF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR    R    LA    +  +LSG L Q  R+  +     G  ++ + TD+A+RG+DL
Sbjct: 253 TATRDDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQKILVTTDIASRGLDL 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            ++ LVI+ ++    E  +HR GRTGRAG KG ++ FV P++
Sbjct: 313 LNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISFVGPKD 354


>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 434

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/368 (32%), Positives = 186/368 (50%), Gaps = 17/368 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L     + S
Sbjct: 12  ILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPILEIL----SKCS 67

Query: 71  PA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P   +    L + PTRELA QV   +           +V  GGV ++ + R L++G  I+
Sbjct: 68  PIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKLRDGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    L+ +V DEAD MLD+GF  DI+ IL   P+K++ LMFSAT
Sbjct: 128 VATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQTLMFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK+   + V +++   N     +      V    +   ++ +++ H     +
Sbjct: 188 FSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQWIHPVDKFKKQALLIYLIQEHSWYQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R    L +       + G  SQ  R+ AL   ++ +  V +ATD+AARGI
Sbjct: 248 VFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-----------FVIPQNMQRRAE 357
           D+  L  V++ +L   PE+ +HR GRTGRAG KG ++           F I + +Q + +
Sbjct: 308 DIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFDIERLIQNKLD 367

Query: 358 RLFREANV 365
           R+  E  V
Sbjct: 368 RIMVEGFV 375


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score =  187 bits (475), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 186/348 (53%), Gaps = 14/348 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +A    +      +S  +A   L
Sbjct: 50  GFEKPSAIQQRGVKPILDGYDTIGQAQSGTGKTATFVIAALQKI-----DYS-LNACQVL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ +    L     +    C+GG SV  +   L+NG H+VVGTPGR+ D 
Sbjct: 104 LLAPTRELAQQIQKVALALGDYCDLRCHACVGGTSVRDDMNKLKNGVHMVVGTPGRVFDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L + HLK  +LDEADEML  GF+  I  I    P+  ++ +FSAT+   I  L  
Sbjct: 164 LDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQDVQVALFSATMPNEILHLTT 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D  R+ +  E      I  R   VA+   +     +V++        AI++C+TR 
Sbjct: 224 QFMRDPKRILVKQEELTLEGI--RQYYVAVEKDEWKLATLVDLYETLTIVQAIIYCNTRI 281

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V R TK + +  F    + G++ Q++R   ++  R G +RV I TD+ ARGID+  + L
Sbjct: 282 RVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSL 341

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           VI+ +L  + E  +HR GR+GR GRKG++V FV   +++  R  ER +
Sbjct: 342 VINYDLPVSAETYIHRIGRSGRFGRKGVAVNFVTVDDIEHLRDIERHY 389


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 185/353 (52%), Gaps = 8/353 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ Q +  A+ + GY   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MKFQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
             L  +N       +   L + PTRELAVQ+    +  Y +   + AVCI GG     + 
Sbjct: 61  EKL--DNGEVRKLRS---LVLTPTRELAVQIFENFKK-YGRYLPLRAVCIYGGAKQKPQM 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V T GRL D++    +++  ++  VLDEAD MLD+GF +D+  I  S   
Sbjct: 115 EALRRGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT+   I  L +   +D   V +A ++     +D +   V  SD+   +  I
Sbjct: 175 DRQTLMFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVGHSDKLKVLAEI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       I+F  T+    R  + L        A+ G+ +Q +R + L+  + G   V 
Sbjct: 235 LKQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA+RG+D+P++  VI+  L   PE  +HR GRTGRAG  G+++ +  ++
Sbjct: 295 VATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEED 347


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           I    P+ I E + + GY + T +Q   +   L+ +D++  A+TGSGKT+AF + L + +
Sbjct: 396 IESGFPKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWI 455

Query: 63  --LAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L + +R   A   P A+ +APTRELA Q+  E +      G+   V +GG+S   +  
Sbjct: 456 QSLPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGLSREEQGF 515

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
            L+ G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P  
Sbjct: 516 RLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVT 575

Query: 178 -----------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
                                  K R+ +MF+AT+ PA+  LA+ Y +    V I S  +
Sbjct: 576 NLKPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGK 635

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
                +    ++  +D+   ++ IL        I+F + +       K L +  +    L
Sbjct: 636 PTERTEQIIHIMGENDKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTL 695

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G   Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GR
Sbjct: 696 HGGKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGR 755

Query: 335 TGRAGRKGMSV 345
           TGRAG+ G ++
Sbjct: 756 TGRAGKTGCAI 766


>gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 430

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 178/340 (52%), Gaps = 5/340 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY  LT VQ  ++   L   D++  A+TG+GKT +F L L   LL E   +   
Sbjct: 14  DAIDECGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPLLERLLKEEQEYPCL 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+QV   +      T +      GG +++ +R+ L  G  I+V TP
Sbjct: 74  RG---LILTPTRELAIQVAANITRYGQFTSLKTLAVYGGANMNPQRKALNAGVDILVATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +   GLN+S + ++++DEAD MLD+GF  DIE +      +     FSAT S  
Sbjct: 131 GRLFDFVGQHGLNLSDVTSLIIDEADRMLDMGFVRDIERVKSLVASQHVTHFFSATYSDQ 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA+        +N+A + R  + ++    LV    +   +  ++  +  +  +VF +
Sbjct: 191 VKLLAEKMLISPQWINVA-QTRSAASVEQEVYLVDKRRKAELLSELIGRNNWQQVLVFAT 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S       L+    +     G+ +Q  R+  L+  + G+ RV +ATDVAARGID+  
Sbjct: 250 TKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEEFKAGKLRVMVATDVAARGIDIQA 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P +
Sbjct: 310 LPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVCPSD 349


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 9/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L     + A+ 
Sbjct: 137 FPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ- 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 196 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 254

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 255 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 314

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I +   I+ 
Sbjct: 315 SATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 374

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G K  ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +A
Sbjct: 375 NRGNK-CLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 433

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 434 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 492


>gi|327306545|ref|XP_003237964.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
 gi|326460962|gb|EGD86415.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
          Length = 565

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/376 (33%), Positives = 208/376 (55%), Gaps = 17/376 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 100 KAISGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 157

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 158 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 214

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK+ R+ ++FSA
Sbjct: 215 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKEDRQTMLFSA 274

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 275 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 333

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 334 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 393

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  + Q  +       RE
Sbjct: 394 AARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFL-QPSEVGFINHLRE 452

Query: 363 ANVSVVWEPAPSVEAI 378
           A V VV    P+   I
Sbjct: 453 ARVPVVEFEFPTKHII 468


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 188/342 (54%), Gaps = 9/342 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL++ G+ + T +Q+  +   +  +D+L  AQTG+GKT  F L +   + AE  
Sbjct: 10  PEIL-RALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHKI-AEGR 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAH 126
           R    +   AL ++PTRELA Q+ +  +  YAK     AV  +GGV   R+ R+L+    
Sbjct: 68  RHGIRNR--ALVLSPTRELATQIHQAAKD-YAKYLHTNAVLLVGGVDFIRQERNLKRNWD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+R   L +++   V++DEAD MLD+GF  DI  I+   PK R+ L+FS
Sbjct: 125 IVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT  P I  LA  +Q DAV V +  E +    I    + V+   +   ++  +   G   
Sbjct: 185 ATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSE 244

Query: 247 A---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ S    +  L +  +   AL G+ SQ  R+  L   R G  +V +ATDV
Sbjct: 245 TGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  +  VI+ +L    E+ +HR GRTGRAGR G ++
Sbjct: 305 AARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRAL 346


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 301

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 302 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 361

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 362 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 421

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 422 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 480

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 481 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 540

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 541 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 579


>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
 gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
          Length = 788

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 186/368 (50%), Gaps = 28/368 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
            IPQ I + +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L   +  L
Sbjct: 366 KIPQEILDIIERVGYTEATPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLIMWIQSL 425

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +  R   A   P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+
Sbjct: 426 PKIQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNPLGIRTVVVVGGLSREEQGFRLR 485

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P     
Sbjct: 486 LGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLK 545

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA+ Y +    V I S  +   
Sbjct: 546 PDTEEAEDDKFLLANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPVE 605

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  D+   +  +L        I+F + +       + L +  +    L G 
Sbjct: 606 RVEQIVHIVSEQDKRRKLCELLARGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGG 665

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  +++G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGR
Sbjct: 666 KGQEQREYALSSLKNGTKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGR 725

Query: 338 AGRKGMSV 345
           AG+ G++V
Sbjct: 726 AGKHGIAV 733


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 194/372 (52%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 158 FPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 216

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 217 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 276

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 277 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 336

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D +  ++ +++    
Sbjct: 337 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDENEKLMKLVKLLTD 392

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 393 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 452

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+  +G +  +   +   +A  
Sbjct: 453 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNRGTAYTLFTHSNANKAND 512

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 513 LIQVLREANQTI 524


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 181/338 (53%), Gaps = 9/338 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-------FSPA 72
           Y+  T VQ+  +   L  +D++  AQTGSGKT  F     + +L E  +           
Sbjct: 170 YMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLREGAKPVDGAGSSQRK 229

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S P AL +APTRELA Q+  E +     TGV   V  GG  V R+ R+L+ G  ++V TP
Sbjct: 230 SHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEVGRQVRELERGCDLLVATP 289

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATIS 190
           GRL D +    +++S ++ ++LDEAD MLD+GF   I  +++    P++R+  MFSAT  
Sbjct: 290 GRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRRLVEQEDMPRERQTFMFSATFP 349

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA ++ +D + + +        D+  +   +   D+++ +V  L        +VF
Sbjct: 350 REMQRLAADFLQDYIFLTVGRVGSASKDVKQQIEFIEPHDKEDYLVRFLNQVQEGLILVF 409

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       ++L    F   ++ G+ +Q+ER  AL   R GR  V +ATDVAARG+D+
Sbjct: 410 VETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNSFRSGRTPVLVATDVAARGLDI 469

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ +L +N ++ +HR GRTGRAG  G ++ ++
Sbjct: 470 NGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMM 507


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 209/441 (47%), Gaps = 25/441 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + L+ E
Sbjct: 262 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMRE 321

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 322 GVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIV 381

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 382 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 441

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    V +    +   +V 
Sbjct: 442 QRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVE 501

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 502 ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 561

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 562 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 621

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G+    VD    K      
Sbjct: 622 QPL-----VKVLTDAQQDVPAWLEEIAFSTYT-PGFSGSTRGNMFASVDTRKGKS----- 670

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
                 ++ AG    +  TPV
Sbjct: 671 -----TLNTAGFSTSQTPTPV 686


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 186/347 (53%), Gaps = 6/347 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+++  A+ E GY  L+ VQ   +    R  DVL +AQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPEIL-RAIDECGYTELSPVQRLAIPHVRRGHDVLANAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   D  +P  AS   AL +APTRELA Q+    E       + VA   GGVS   + 
Sbjct: 62  KLI---DTPTPRVASNAKALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSHKGQA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I+V TPGRL +HI+   +++S++  +VLDEAD MLD+GF +DI+ ++ +   
Sbjct: 119 IKLKAGADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVND 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT   ++   + +  K    V    +N     + +    V    ++  +  +
Sbjct: 179 ERQTLLFSATYPSSMKQFSASVLKQPKIVQATKDNSTAETVQHVVYPVEERRKNELLSEL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        +VF + + + S   + L +         G+ +Q  R  AL+  ++G+ RV 
Sbjct: 239 IGRKNWHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGARRRALREFKEGKVRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT+VAARG+D+  LE VI+ +L    E+ +HR GRTGRAG  G +V
Sbjct: 299 VATEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAV 345


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 188/359 (52%), Gaps = 9/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L     + A+ 
Sbjct: 139 FPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ- 197

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 198 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 256

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 257 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 316

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I +   I+ 
Sbjct: 317 SATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 376

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G K  ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +A
Sbjct: 377 NRGNK-CLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 435

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 436 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 494


>gi|323450835|gb|EGB06714.1| hypothetical protein AURANDRAFT_28650 [Aureococcus anophagefferens]
          Length = 482

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 134/381 (35%), Positives = 189/381 (49%), Gaps = 30/381 (7%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR---FSP 71
           L++RG   +T +Q    +     +DVL  ++TG+GKT+AFGL L   L AE  R   + P
Sbjct: 102 LAQRGIDTMTEIQHLTFDAAHAGRDVLGKSRTGTGKTLAFGLPLVERL-AERAREGDYDP 160

Query: 72  ---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  P  L +APTRELA QV  EL  L    G+      GGVS   +   L+ G  ++
Sbjct: 161 KKRARGPAILVLAPTRELAKQVEAELHLLAQTHGLSTTCFHGGVSYGPQENALRRGVDVL 220

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-----FILDS-------- 175
           V T GR+ DHI    L++S    VVLDEADEML +GF DD+E     F LD         
Sbjct: 221 VATVGRVIDHIDRGNLDLSDAYHVVLDEADEMLSMGFADDVERIFSDFDLDDLLGAAPPP 280

Query: 176 -----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLV-- 226
                  ++ + L+FSAT    +  L   Y +D   V++  + RQ   + + ++AVLV  
Sbjct: 281 ADAAAPLRRPQTLLFSATTPSWVKKLTSKYLEDPELVDVVGDARQQAATTVTHKAVLVPR 340

Query: 227 ALSDRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
               R + + +I+    G    IVF ST+          A        L G++ Q +R  
Sbjct: 341 GPDARASLLEDIIAAAQGGGRVIVFTSTKKECDELAGGPAFQRLAAQVLHGDIGQAQRET 400

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R G   V +ATDVAARGID+  ++LV+      + E  +HRSGRTGRAGR G +V
Sbjct: 401 TLAQFRRGAFTVLVATDVAARGIDVKGVDLVVQYRTPRDAEGYVHRSGRTGRAGRDGTAV 460

Query: 346 FVIPQNMQRRAERLFREANVS 366
            +  +  +R    L R   V+
Sbjct: 461 VLYDEREERDVRSLERLTGVT 481


>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 511

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 183/336 (54%), Gaps = 3/336 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + GY   + +Q   +   L   D++ SAQTG+GKT AF L     L  E+   S
Sbjct: 29  ILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQRLSVESAVRS 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELA QV            V V   +GG+    + + L     I+V 
Sbjct: 89  --KGPRVLVLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLLSGFVDILVA 146

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    ++ S L+ +VLDEAD MLD+GF DD+E I  ++P  R+ L+FSAT+ 
Sbjct: 147 TPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVERIAAATPATRQTLLFSATLE 206

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIV 249
             I  LA+   K   R+++ S   +H +I+ R + V  ++ ++  + ++LR      A+V
Sbjct: 207 GVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLMYVDDMAHKNRLLDHLLRDVDLNQALV 266

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+         L+       AL G+++Q+ER+  L  +R G  RV +ATDVAARGID
Sbjct: 267 FTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLVATDVAARGID 326

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  VI+ +L    E+ +HR GRTGR G  G++V
Sbjct: 327 VAGITHVINFDLPKFAEDYVHRIGRTGRGGASGIAV 362


>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
          Length = 422

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 181/336 (53%), Gaps = 3/336 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+   TS+Q +++   +  +D+L SA TG+GKT AF L  A  LL     +  A+
Sbjct: 14  ALGDMGFTAPTSIQSSVIPKAMEGRDILASAPTGTGKTAAFLLPAAQFLLDFPREYHGAT 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             L L+  PTRELA+Q       +   T +V  V  GG++   +R  L     I+V TPG
Sbjct: 74  RILILS--PTRELAIQTYEHALEITQHTNIVCGVITGGINYGTDRDTLAKNLDILVATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL +HI  +  +   ++ ++LDEAD MLD+GFR  +  I   +  +++ ++FSAT+  P 
Sbjct: 132 RLFEHIEKESFDCRDIEVMILDEADRMLDMGFRSIVNQIASEARWRKQSMLFSATLEGPG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I   +K+   +   + +    ++ + I     L   +     ++  +    A++AIVF  
Sbjct: 192 IAQFSKDLLVNPESITVDPSRKEKAKIHQWYHLADDASHKYQLLKHILSEQAESAIVFVK 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  + +    LA     V  L GE+ Q +R+ A+   ++G  ++ +ATDVAARGID+ D
Sbjct: 252 TRERLQQLKDRLASDDIDVCWLQGEMPQDKRNQAMSRFKNGEVKILLATDVAARGIDVDD 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  VI+ ++    +  LHR GRTGRAG KG ++ ++
Sbjct: 312 ISHVINFDMPRTSDVYLHRIGRTGRAGAKGTAISIV 347


>gi|326384286|ref|ZP_08205967.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196884|gb|EGD54077.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 499

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 7/371 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +P  I +AL+  G  +   +QE  L   L  +DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFADLGVPTPIADALTAEGKASPFPIQEKTLPDTLSGRDVLGRGKTGSGKTLAFSVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R  P   P AL ++PTRELA Q+   +E L A  G+ V    GGV   R+ 
Sbjct: 61  VTRLAQACVRRKPGR-PTALVLSPTRELATQIATAMEPLAAAVGLRVTTVFGGVKQTRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA IVV  PGRL D +R + +++  ++  VLDEAD M DLGF   +  IL ++P 
Sbjct: 120 SALRAGADIVVACPGRLEDLMRQRIVSLDDVQITVLDEADHMADLGFLPVVTRILAATPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L K +    V  ++       + + +    VA +    A+V  
Sbjct: 180 GGQRLLFSATLDNGVDKLVKRFLTKPVTHSLEDATSPVAQMTHHVFRVASTTEKTALVKE 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR--DGRAR 296
           L   G    I+F  T+    +  K L       V L G LSQ +R   L      DG A+
Sbjct: 240 L-ASGTGRRILFTRTKHQAKKLAKKLTAEGIPAVDLHGNLSQAQRDRNLASFAAPDG-AK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ +  +ELV+H +  +  +  LHRSGRT RAG  G  V +         
Sbjct: 298 VLVATDVAARGVHVDGVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTICLPEQWGDL 357

Query: 357 ERLFREANVSV 367
            +L ++A + V
Sbjct: 358 RKLLQKAAIKV 368


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 17/370 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++  P  + E ++  G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 98  VKSFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 156

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +      +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 157 AIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 217 RDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDR 231
            R+ L +SAT    +  LA+ +  +  +V I S +       RQH DI      V+ + +
Sbjct: 277 DRQTLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDI------VSENQK 330

Query: 232 DNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            N +V +L         ++F  T+    + T+ L    +  +++ G+ SQ ER   L   
Sbjct: 331 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 390

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G++ +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +      
Sbjct: 391 KAGKSPIMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 450

Query: 351 NMQRRAERLF 360
           +  R A+ L 
Sbjct: 451 SNARFAKELI 460


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 197/352 (55%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALVA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
 gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 571

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 184/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   LS +G  +   +Q A +   L   DVL   QTGSGKT+AFGL + + +   
Sbjct: 26  GLPKPLVTGLSRQGIDSPFPIQSATIPDILAGSDVLGRGQTGSGKTLAFGLPMMARIAGS 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      PLA+ + PTRELA+QV   LE L     + +   +GG+S+ R+   L+ G 
Sbjct: 86  KAR---PGRPLAVVLVPTRELAMQVTDALEPLGRGLSLRMKTVVGGMSMGRQIEALRRGV 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I+     +  ++  +LDEAD M DLGF   +  IL  +P   + L+F
Sbjct: 143 EVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVSAILQQTPADSQRLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  ++A        +++  + V   D+      I    G  
Sbjct: 203 SATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVHRDDKFPVTAEIANREG-- 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K LA+   +   L G   Q +R+  L   ++G   V + TDVAA
Sbjct: 261 RTIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKEGAINVLVCTDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + ++ LV+H +   + ++ LHR GRT RAG KG  + ++  N +R  + + R A +
Sbjct: 321 RGIHVDNISLVLHVDPPQDHKSYLHRGGRTARAGEKGTVMTLVLPNERRSTDAMTRRAGI 380


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 191/362 (52%), Gaps = 12/362 (3%)

Query: 11  IGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IGE    AL + G    + VQ   +   L  +D+L  +QTG+GKT+A+ L L        
Sbjct: 11  IGEQLTAALLDYGISEPSPVQAECIPAALEGRDILAQSQTGTGKTLAYLLPLL------- 63

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R +P    L  L +APT+ELA+Q+ RE E      G+     IGG ++ R+   L+   
Sbjct: 64  QRINPGEKTLQGLILAPTQELAMQILREAEKYGEPLGIRSQALIGGAAIKRQLEKLKLHP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ + +  + L +  L  VV+DE D+M  LG   D+E IL  + + R+++  
Sbjct: 124 QLVVGTPGRIREILALRKLKLHTLLTVVVDEVDQMFQLGGTADVEHILRGTLRDRQLMFL 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI+P I  LA    K+ + + I  E R    +++   +    D+ + +  I+R+   +
Sbjct: 184 SATINPDIRALAAKEMKEPLEIGIEPEQRTSKTVEHLYFVSEARDKIDMLRRIVRHFEPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +    ++     +        AL G+  +  RS  LQ  R+G+ RV +A+DVAA
Sbjct: 244 RTIVFINNTDQIAEVEAKMNYVGLSAGALYGDADKTARSLTLQRFREGKIRVLVASDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L LV++ +   + E+ +HR GRTGR GRKG++V ++    +    +  RE  +
Sbjct: 304 RGLDIENLALVVNLDPPIDSEHYVHRVGRTGRMGRKGLAVSIVTPQEEFIMRKFARELGI 363

Query: 366 SV 367
            +
Sbjct: 364 EI 365


>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
 gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
          Length = 429

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 180/336 (53%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL ++GY + + +Q   +   +  +DV+ +AQTG+GKT  F L +   L   + + +  
Sbjct: 32  EALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERL--RHGKPAGR 89

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA QV   +    +   +   V  GGV  + +   L+ G  ++V TP
Sbjct: 90  GQIRALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINRLRGGVDLLVATP 149

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   L+   L+ +VLDEAD MLD+GF  DI  ++   P KR+ L+FSAT S  
Sbjct: 150 GRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKRQTLLFSATFSAP 209

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     D V + +  EN+    ++       ++ + + + +++R    +  +VF  
Sbjct: 210 IRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRAGDWRQVLVFSR 269

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    L++      A+ G  SQ  R+ ALQ  + G  RV +ATD+AARGID+  
Sbjct: 270 TKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVATDIAARGIDIQQ 329

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L +  E+ +HR GRTGRAG  G +V ++
Sbjct: 330 LPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLV 365


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 163 FPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 221

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 222 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 281

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 282 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 341

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D +  ++ +++    
Sbjct: 342 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDENEKLMKLIKLLTD 397

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 398 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 457

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 458 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 517

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 518 LIQVLREANQTI 529


>gi|297157473|gb|ADI07185.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 587

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 174/324 (53%), Gaps = 10/324 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSP---ASAPLALAIAPTRELA 87
           L   DV+  A+TG+GKT+ FGL L   +    D    R  P     AP AL + PTREL 
Sbjct: 3   LSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGRAKPELLTDAPQALVVVPTRELC 62

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
            QV  +L        V V    GG +   +   L+ G  +VVGTPGRL D    K L +S
Sbjct: 63  QQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLRLS 122

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
            +K++VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+   + +LA+ Y      +
Sbjct: 123 SVKSLVLDEADEMLDLGFLPDVEKIIQMLPAKRQTMLFSATMPGQVISLARRYMSQPTHI 182

Query: 208 NIASENRQHSDID--YRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
              + + + + +    + V  A S D+   +  +L+  G    ++FC T+ + +     L
Sbjct: 183 RATAPDDEGATVANITQHVFRAHSLDKPEVVARVLQAEGRGLVMIFCRTKRTAADIADQL 242

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
           A   F   A+ G+L Q  R  AL+  R+G+  V +ATDVAARGID+  +  VI+ +   +
Sbjct: 243 AHRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVEGVTHVINYQSPED 302

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI 348
            +  LHR GRTGRAG  G ++ ++
Sbjct: 303 EKTYLHRIGRTGRAGASGTAITLV 326


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 180/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +    S   A
Sbjct: 16  LQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGSAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  I 
Sbjct: 135 LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATFTDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+A +  +  V ++++  N   S I   AV V   ++ +  ++++  +   +A+VF  TR
Sbjct: 195 TMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWDHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 NGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/349 (34%), Positives = 198/349 (56%), Gaps = 11/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALVA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              A  DR  P   P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  
Sbjct: 73  NRPALADR-KPED-PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 121 LQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ 
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLG 250

Query: 238 IL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  
Sbjct: 251 LLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|307201507|gb|EFN81270.1| Probable ATP-dependent RNA helicase DDX23 [Harpegnathos saltator]
          Length = 679

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
            P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF   L L  T L 
Sbjct: 258 FPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLP 317

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 318 KIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRM 377

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 378 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 437

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 438 DNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPTER 497

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       + L +  +    L G  
Sbjct: 498 TEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGK 557

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 558 GQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 617

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 618 GKAGLAI 624


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 179/344 (52%), Gaps = 6/344 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---- 64
           Q I  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L L   L A    
Sbjct: 10  QPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLLHKLAAGEPV 69

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +N    PA    AL + PTRELA QV   +        +   V  GGV +  +   L+ G
Sbjct: 70  KNRNGRPAIR--ALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQVDRLRKG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH +   +++S ++  VLDEAD MLD+GF  DI+ +L   P K++ L+
Sbjct: 128 VDILVATPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIPAKKQSLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA         + +A  N     I  R + V   ++ + + ++++    
Sbjct: 188 FSATFSDEIKALADRLLNKPQVIEVARRNTTAETIAQRVIKVGRENKKDLLAHLIKSQNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF   +   +R  + L ++    +A+ G  SQ  R+ AL   + G   V +ATD+A
Sbjct: 248 HQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGDLTVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  L  VI+ EL + PE+ +HR GRTGRAG +G ++ ++
Sbjct: 308 ARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLV 351


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 187/347 (53%), Gaps = 21/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-------------- 65
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  E              
Sbjct: 222 YTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIFTEGPGEALQAMKNSAQ 281

Query: 66  -NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            N ++      P++L +APTRELA+Q+  E   +  ++ V   V  GG  + ++ RDL+ 
Sbjct: 282 ENGKYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSHVRPCVVYGGADIGQQIRDLER 341

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + + +   +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 342 GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 401

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ ++ + + +        +I  + V V  +D+ + ++++L
Sbjct: 402 RQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 461

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G ++  +VF  T+         L    +   ++ G+ +Q++R  AL   R GR  + 
Sbjct: 462 NATGKESLTLVFVETKKGADSLEDFLYREGYSCTSIHGDRTQRDREEALHQFRSGRCPIL 521

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+ +++ VI+ +LSS+ E  +HR GRTGR G  G++ 
Sbjct: 522 VATAVAARGLDISNVKHVINFDLSSDIEEYVHRIGRTGRVGNLGLAT 568


>gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
          Length = 448

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 196/342 (57%), Gaps = 13/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T VQE  +   L  KD+LVSA+TGSGKT AF L + + LLA ND  +P 
Sbjct: 17  KALEKQGFEQPTPVQEQSIPAALAGKDLLVSAETGSGKTAAFLLPILNKLLA-ND--APN 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA QV +  E L + + +   + IG  +   ++   +    I++ TP
Sbjct: 74  TGTRALVLVPTRELARQVLKNCEALASFSHLKAGLIIGRENFQIQKALFRKNPEILIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL +H+     +   L+ +VLDEAD MLD+GF +D+  I  +  K+R+ L++SAT++  
Sbjct: 134 GRLVEHLDQNTPDFKDLEVLVLDEADRMLDMGFGEDVLKITHACNKERQTLLYSATLNQK 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVF 250
            +  + +    D  ++ + S   QH  I  + +L      ++  ++ +L     + A++F
Sbjct: 194 GLKPMIEKVLTDPQKLLLNSVRDQHQSIRQQIILADDTGHKERLLLALLTREKYEKALIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVA----LSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +TRA       VL E LF+       L GE+ Q+ R+  ++ +R G     +A+DVAAR
Sbjct: 254 TNTRAKAD----VLGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHISALVASDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D+  ++LVI+ +++ + ++ LHR GRTGRAG  G++V +I
Sbjct: 310 GLDIKGIDLVINFDMARSGDDYLHRIGRTGRAGETGLAVSLI 351


>gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 546

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 188/356 (52%), Gaps = 7/356 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T VQE +L   L  +DV+  ++TGSGKT  + L +  + +   ++    S P AL
Sbjct: 20  GFTDCTEVQEKVLPISLSHRDVMAQSKTGSGKTAVYVLTILQSFVEAQNQ--GKSKPKAL 77

Query: 79  AIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELAVQ+  + L+       V V    GGV   ++   L+ G  I V TPGR+ D
Sbjct: 78  IVAPTRELAVQIEEDTLKLASGMDDVSVGCFFGGVGYGKQDEILEKGCDIFVCTPGRILD 137

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLMFSATISPAITT 195
           + +   ++       ++DEAD + D+GF  DI+  F L  +   R+ ++FSAT+   +  
Sbjct: 138 YQKMHKIDFRQFDIFIVDEADRLFDMGFYPDIQKMFSLLRACTDRQTMLFSATLGTKVRN 197

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA ++  + V + +  E      I      ++   +    + +++    +N ++F +T+A
Sbjct: 198 LAWSFMNEPVELEVQPEEITVKAITQELFHISKDQKFGLFLKLMKKENPENCLIFTNTKA 257

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                 K L+ + +    L G+L Q +R   ++ M+DG+ +  +ATDVAARG+ + DL+L
Sbjct: 258 RCIEVAKRLSLNGYPTKYLMGDLPQTKRLQTIERMKDGKIKFLVATDVAARGLQIDDLQL 317

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSVVW 369
           V++ ++  + E+ +HR GRT RAG+ G S+ +  +      E +  + +  + V+W
Sbjct: 318 VVNYDIPDDFESYVHRIGRTARAGKSGKSITLADEEYVFNLEPIENYIQMKIPVIW 373


>gi|238749853|ref|ZP_04611357.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
 gi|238711782|gb|EEQ03996.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 188/370 (50%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L           
Sbjct: 15  AVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQNQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V TPG
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 188/342 (54%), Gaps = 9/342 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  AL++ G+ + T +Q+  +   +  +D+L  AQTG+GKT  F L +   + AE  
Sbjct: 10  PEIL-RALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHKI-AEGR 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAH 126
           R    +   AL ++PTRELA Q+ +  +  YAK     AV  +GGV   R+ R+L+    
Sbjct: 68  RHGIRNR--ALVLSPTRELATQIHQAAKD-YAKYLHTNAVLLVGGVDFIRQERNLKRNWD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+R   L +++   V++DEAD MLD+GF  DI  I+   PK R+ L+FS
Sbjct: 125 IVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT  P I  LA  +Q DAV V +  E +    I    + V+   +   ++  +   G   
Sbjct: 185 ATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEGKSE 244

Query: 247 A---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ S    +  L +  +   AL G+ SQ  R+  L   R G  +V +ATDV
Sbjct: 245 TGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  +  VI+ +L    E+ +HR GRTGRAGR G ++
Sbjct: 305 AARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRAL 346


>gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 199/366 (54%), Gaps = 6/366 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +++ ++GY   TS+Q+  +   L  +D++  A+TGSGKT +F +  A   +      
Sbjct: 341 IMIQSIQKQGYETPTSIQKQAVPIALSGRDLIAIAKTGSGKTASF-IWPAIVHIMNQPYL 399

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P+A+ ++PTRELA Q+  E +       +   V  GGV+   + R+L+ G  I+V
Sbjct: 400 EKGDGPIAVFVSPTRELAHQIYMETQKFAKPYKIKTTVVYGGVTKLLQCRELKAGCEILV 459

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D I+ K   ++    +VLDEAD M D+GF   ++ I+      R+ L+FSAT 
Sbjct: 460 GTPGRIIDMIKLKATKMNRCTFLVLDEADRMFDMGFEPQVQSIIGQIRPDRQTLLFSATF 519

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAK-NA 247
             AI  LA+N   D +R++I +    + DI  +  VL +  ++   +   L     + N 
Sbjct: 520 PNAIEQLARNILTDPIRISIGNSGSANQDIKQFVKVLPSDGEKWGWLTETLPLMLTEGNV 579

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F ST+ +V + +  L +  F    + G+  QQER+  +   + G   + +ATDVAARG
Sbjct: 580 VIFVSTKVAVEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTVPILVATDVAARG 639

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           +D+  ++ V++ ++S + ++  HR GRTGRAG +G +   + P++    A+  R   EAN
Sbjct: 640 LDISLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKDTHFSADLVRHLEEAN 699

Query: 365 VSVVWE 370
            +V  E
Sbjct: 700 QNVPPE 705


>gi|219971722|gb|ACL68521.1| vasa-like protein [Pleurodeles waltl]
          Length = 727

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 193/364 (53%), Gaps = 28/364 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +   +S+ GYV LT VQ+  +   L ++D++  AQTGSGKT AF L + + ++  
Sbjct: 315 NLPETLTRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILAHMM-- 372

Query: 66  NDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D  +P S     P A+ +APTREL  Q+  +       T +   V  GG       R +
Sbjct: 373 RDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSLRQI 432

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SP 177
             G +I+  TPGRL D I+ + + ++ L+ +VLDEAD MLD+GF  D++ +++S    S 
Sbjct: 433 YQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGMPSK 492

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + R+ LMFSAT    I +LAK + K D + V +       SD++   + V    + + +V
Sbjct: 493 EDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKDKLV 552

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G +  +VF  T+   S               + G+  Q+ER  AL   R G+  
Sbjct: 553 EILQGLGIERTMVFVKTKKRAS---------------IHGDRLQKEREEALADFRFGKCN 597

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQR 354
           V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G   K ++ F    N  R
Sbjct: 598 VLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDNEDR 657

Query: 355 RAER 358
              R
Sbjct: 658 TVAR 661


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 193/341 (56%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL    
Sbjct: 10  PELV-KALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLNSGK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G  I
Sbjct: 69  KASRGTAR-GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+   ++SP+   ++M
Sbjct: 128 LVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   + + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++GRARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G ++
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAI 345


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score =  187 bits (474), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 186/341 (54%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   G+   +++Q+  + P +  +DV+  +Q+G+GKT  F +   S+L   
Sbjct: 2   NLKPTLLRGIYAYGFEKPSAIQQRAIRPIVCGRDVIAQSQSGTGKTAVFSI---SSLQLL 58

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++R   ++ P  L ++PTRELA Q  R +  L     V    CIGG S+  +R+ LQ G 
Sbjct: 59  DER---SNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQGV 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++ GTPGR+ D I+   L    LKA ++DEADEML+ GF++ I  I    P + ++++ 
Sbjct: 116 QVLSGTPGRVYDLIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLV 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  + + +  D +R+ +  +      I    V V   + + + + ++      
Sbjct: 176 SATLPVEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTLTV 235

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V      + E  F V A+ G+++Q ER   ++  R G +RV IATD+ 
Sbjct: 236 TQAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLW 295

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            RGID+  + LVI  +L +N E  +HR GR+GR GRKG+++
Sbjct: 296 GRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGVAI 336


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   TS+Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 136 FPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINSQ 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S    P+AL +APTRELA Q+ +  +     +G+      GG     + RDL  G  
Sbjct: 195 PKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVE 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 255 IVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+++ KD  ++N+ S     +    + + V    +++N +  +L+   A+
Sbjct: 315 ATWPKEVKNLAEDFLKDYAQINVGSLQLSANHNILQIIDVCQDYEKENKLSTLLKEIMAE 374

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           +    IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 375 SENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 434

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +  F  P N  +  +  ++
Sbjct: 435 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNANKANDLIQV 494

Query: 360 FREAN 364
            +EAN
Sbjct: 495 LKEAN 499


>gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 492

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 126/346 (36%), Positives = 185/346 (53%), Gaps = 9/346 (2%)

Query: 10  VIGEALSERGYVNLTSVQ-EAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            I E +   GY N T +Q EAI  P + E +D++  AQTG+GKT AF L +   L+    
Sbjct: 11  TITENIKRLGYENPTPIQAEAI--PHVTEGRDLMGLAQTGTGKTAAFLLPIIHRLMTTK- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S      AL +APTRELA Q+ R    L   T +  AV  GGV +  + R L+ G  I
Sbjct: 68  --SEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQGVDI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V  PGRL DH+    +    L+ +VLDEAD M D+GF  DI+ IL + P +R+ L+FSA
Sbjct: 126 IVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQTLLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ PAI+ LA     D V V I       S +++    ++ + +   ++++L   G ++ 
Sbjct: 186 TMPPAISGLAHETLTDPVTVRIG-HMAPLSTVEHAIYPISHTQKAPLLLHLLEEAGKQSV 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L     +   L G LSQ++R  A+   R G  +V +ATD+AARG
Sbjct: 245 IVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATDIAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ID+  +  V++ ++    E   HR GRTGRA  +G +  FV  ++M
Sbjct: 305 IDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDM 350


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 199/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 86  SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 145 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 203

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 204 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 263

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D V++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 264 WSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 323

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 324 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 383

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 384 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 443

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 444 KVLEEANQAI 453


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 191/365 (52%), Gaps = 26/365 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E + + GY   T +Q A +   L+ +D++  A TGSGKT +F L L   +  L 
Sbjct: 371 LPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELP 430

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E        G  V   +GG S   +   L+
Sbjct: 431 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLR 490

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 491 NGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 550

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          + R+ +M++AT+  A+  +A+ Y +    V I S       ++ R
Sbjct: 551 PDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 610

Query: 223 AVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             ++A  D R   + +IL     +   IVF + + +     + + +  F  V L G  +Q
Sbjct: 611 VEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQ 670

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 671 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGK 730

Query: 341 KGMSV 345
            G+++
Sbjct: 731 SGVAI 735


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 189/359 (52%), Gaps = 6/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+ N T +Q       L+ +D++  A+TGSGKT+AF L     + A+ 
Sbjct: 226 FPNYLMKEIMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQ- 284

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P   P+ L +APTRELA+Q+ +E    +  T  +  VC+ GG S H +   L+ G 
Sbjct: 285 PTLKPGDGPIVLVLAPTRELALQI-QEQARKFGGTSQISNVCVYGGASKHSQVMMLKKGV 343

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL      R+ LMF
Sbjct: 344 EIVIATPGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMF 403

Query: 186 SATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    + +LA ++  D ++V+I +SE   + +++    + +  ++   +   L  + +
Sbjct: 404 SATWPKEVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFLEANVS 463

Query: 245 KN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           K+   I+F  TR  V    + L    F+ + + G  SQ ER   L   ++G   + IATD
Sbjct: 464 KDDKVIIFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPIMIATD 523

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +A+RG+D+ D++ V++ +  +  E  +HR GRT RAG  G S+  + +   R A  L +
Sbjct: 524 LASRGLDVKDIKFVVNYDFPNTIETYVHRIGRTARAGATGTSISFLTRENARLANDLIK 582


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 181/337 (53%), Gaps = 8/337 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   D +  AQ+G+GKT  F +A    +      +S  S  + L
Sbjct: 48  GFERPSAIQQRGIKPIIENHDTIGQAQSGTGKTATFSIAALQLI-----DYSVVSCQV-L 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 102 ILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDVHKLKAGVHMVVGTPGRVYDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L  + +K  +LDEADEML  GF+  I  +    P   ++ +FSAT+   I  L  
Sbjct: 162 IDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMPPDVQVALFSATMPNEILELTT 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +   R+ +  +      I    V++   + + + + ++        AI++C+TR  V
Sbjct: 222 KFMRSPKRILVKKDELTLEGIKQFYVMIDKEEYKFDTLCDLYESVTITQAIIYCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + E  F V ++ G++SQ ER   ++  R G  RV I TD+ ARGID+  + LVI
Sbjct: 282 DMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           + +L  +P+N +HR GR+GR GRKG+++ F+ P +++
Sbjct: 342 NYDLPMSPDNYIHRIGRSGRFGRKGVAINFLTPMDVE 378


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 214 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 273

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 274 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 331

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 332 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 391

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 392 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 451

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 452 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 510

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 511 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 570

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 571 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 609


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 198/369 (53%), Gaps = 14/369 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++GY   T++Q       +  KD++  AQTGSGKT+A+ L  A   +   
Sbjct: 134 FPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILP-AIVHINNQ 192

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +    P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 193 PSIARGDGPIALVLAPTRELAQQI-QQVAHDFGSSSYVRNTCIFGGAPKGPQARDLERGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 252 EICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 311

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           SAT    +  LA+++ ++ V++NI S +   + +I     +    +++  + N+L+  G 
Sbjct: 312 SATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNNLLQEIGN 371

Query: 244 ----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R+G++ + I
Sbjct: 372 NGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRNGKSSILI 431

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358
           ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+   G S  F  P N  R+A+ 
Sbjct: 432 ATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSNF-RQAKD 490

Query: 359 L---FREAN 364
           L    +EAN
Sbjct: 491 LVSVLKEAN 499


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 178/335 (53%), Gaps = 7/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E GY   T +Q   +   L  +D+L  AQTG+GKT AF L +   LL  + R +P  
Sbjct: 16  ALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPILQRLLTHHRRANPKG 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L +APTRELA Q+    +       +   V  GGV   R+   ++ G  ++V  PG
Sbjct: 76  ARV-LVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVEAMRRGVDVLVAAPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++S L+ +VLDEAD MLD+GF  DI  I+   P+ R+ L+FSAT+  +I
Sbjct: 135 RLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRDRQTLLFSATMPKSI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVF 250
             LA    +D   V +   +   S +D     V   D DN   A+  ++     + A+VF
Sbjct: 195 ADLAHGLLRDPATVQVTPPS---STVDRIRQAVMFVDTDNKRAALQLLVDSPKVERAVVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   ++    L +H     A+ G  SQ  R  A+   R G  +V +ATD+AARGID+
Sbjct: 252 TLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVLVATDIAARGIDV 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  V + +L + PE+ +HR GRT RAGR G +V
Sbjct: 312 DDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAV 346


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 191/368 (51%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 149 FPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 207

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 208 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 267

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +      +     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 268 IVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 327

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT    +  LA+ +  + ++VNI S     +    + V V   S++   ++ +L    A+
Sbjct: 328 ATWPKEVRQLAEEFLTNYIQVNIGSLTLSANHNILQIVDVCDESEKLGKLIKLLSDISAE 387

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + +ATD
Sbjct: 388 NETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATD 447

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L   
Sbjct: 448 VAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQV 507

Query: 360 FREANVSV 367
            REAN  +
Sbjct: 508 LREANQEI 515


>gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 429

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 181/342 (52%), Gaps = 5/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   GY  LT VQ  ++   L   D++  A+TG+GKT AF L L   L+ +     
Sbjct: 12  ILEAIDVCGYQQLTQVQSEVIPVALTGVDLMACAETGTGKTAAFALPLIQRLIFDEVNLG 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+QV   +      T +      GG +++ +R+ L  G  I+V 
Sbjct: 72  SLRG---LILTPTRELAIQVAENISRYCQFTALKTLAVYGGANMNPQRKALNAGVDILVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I   GL++S +K +V+DEAD MLD+GF  DIE +      +     FSAT S
Sbjct: 129 TPGRLFDFIGQHGLDLSDVKTLVIDEADRMLDMGFVRDIERVKALVAAEHITHFFSATYS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA+   +    +N+A ++R  S ++    LV    +   +  ++  +  +  +VF
Sbjct: 189 DDVKALAQKMLQSPQWINVA-QSRSASSVEQEIYLVDKRRKAELLSELVGRNNWQQVLVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S++ S       L     +     G+ +Q  R+ AL+  ++G  RV +ATDVAARG+D+
Sbjct: 248 ASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEEFKNGMLRVLVATDVAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             L LVI+ EL  + E+ +HR GRTGRAG KG ++ FV P +
Sbjct: 308 QALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVCPSD 349


>gi|17064740|gb|AAL32524.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|21387105|gb|AAM47956.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 421

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 185/345 (53%), Gaps = 20/345 (5%)

Query: 41  LVSAQTGSGKTVAFGLALASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +  AQTGSGKT AF   + S ++     E  R S    P A+ ++PTRELA Q+  E + 
Sbjct: 1   MACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRVVYPFAVILSPTRELACQIHDEAKK 60

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
              +TGV V V  GG  +H++ R+L+ G  I+V TPGRL D +    +++  ++ + LDE
Sbjct: 61  FSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 120

Query: 157 ADEMLDLGFRDDIEFI---LDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           AD MLD+GF   I  I   +D  P+  R+ ++FSAT    I  LA ++  + + + +   
Sbjct: 121 ADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRV 180

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLA 265
                 I  R   V  SD+ + ++++L  H  +         +VF  T+         L 
Sbjct: 181 GSSTDLITQRVEFVQESDKRSHLMDLL--HAQRETQDKQSLTLVFVETKRGADTLENWLC 238

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
            + F   ++ G+ +QQER  AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ 
Sbjct: 239 MNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDI 298

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367
           ++ +HR GRTGRAG+ G++     +N   + R    L +EAN  V
Sbjct: 299 DDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEV 343


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 188/359 (52%), Gaps = 9/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L     + A+ 
Sbjct: 147 FPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQ- 205

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 206 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 264

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 265 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 324

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           SAT    +  LA ++  + ++VNI S +    H       V+     RD  I +   I+ 
Sbjct: 325 SATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIME 384

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G K  +VF  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +A
Sbjct: 385 NRGNK-CLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 443

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 444 TDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDL 502


>gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
 gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
          Length = 434

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  ++ +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  ++L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 199/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 96  SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 154

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 155 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 213

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 214 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 273

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D V++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 274 WSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 333

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 334 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 394 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 453

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 454 KVLEEANQAI 463


>gi|189211147|ref|XP_001941904.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977997|gb|EDU44623.1| ATP-dependent RNA helicase DBP3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 601

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/337 (35%), Positives = 185/337 (54%), Gaps = 24/337 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLALAIA 81
           T +Q A     L  +D++  A+TGSGKT+AFG+     +  L +  R        A+ ++
Sbjct: 211 TPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRYISALPQEKR----KGIKAVIVS 266

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTPGRLCD 137
           PTRELAVQ+  +L  L    G+ V    GGV      +D Q      AHIVV TPGRL D
Sbjct: 267 PTRELAVQIYDQLVALATPAGLSVVCVYGGVP-----KDPQVAACRKAHIVVATPGRLND 321

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I     ++S  + VVLDEAD MLD GF + I  I+  +PKKR+ LMF+AT  P++  LA
Sbjct: 322 LIGEGSADLSKAEYVVLDEADRMLDKGFEEAIRQIISQTPKKRQTLMFTATWPPSVRDLA 381

Query: 198 KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA----I 248
             +    V++ I    + E R +  I     +V    ++  ++ +L+ Y   KN     +
Sbjct: 382 STFMNSPVKITIGDNQSGELRANVRIKQVVEVVDPRAKEQRLLQLLKQYQSGKNKDDRIL 441

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC  +    R    +    F+V  + G+LSQ++RS +L   ++G   + +ATDVAARG+
Sbjct: 442 VFCLYKKEAVRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGHVPLLVATDVAARGL 501

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P +++VI+       E+ +HR GRTGRAG++G+++
Sbjct: 502 DIPAVKVVINVTFPLTAEDYVHRIGRTGRAGKEGLAI 538


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 9/361 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 102 FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINHQ 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++ + Y K+  + + C+ GG     + RDL+ G 
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQV-QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGV 219

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 220 EICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 279

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++NI +     +    + V V + +++DN ++ ++    A
Sbjct: 280 SATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMA 339

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 340 EKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLF 360
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+ R+A  L 
Sbjct: 400 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL-RQARDLV 458

Query: 361 R 361
           R
Sbjct: 459 R 459


>gi|303271399|ref|XP_003055061.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463035|gb|EEH60313.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 733

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 121/379 (31%), Positives = 190/379 (50%), Gaps = 32/379 (8%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--- 54
           M+ +E    +P+ I  A+ + GY   + +Q A +   L ++DV+  A+TGSGKT AF   
Sbjct: 295 MRCWEETSLLPEKILRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVP 354

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            LA    L    D  + A  P AL +APTRELA Q+  E           V   +GG S+
Sbjct: 355 MLAYIMELPVMTDEVA-AHGPYALVMAPTRELAQQIEEETTKFAHFLNYRVTSVVGGQSI 413

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G  IV+GTPGR+ D +  +   +     +VLDEAD M+D+GF   +  ++D
Sbjct: 414 EDQGFKLRRGCEIVIGTPGRVIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVMSVMD 473

Query: 175 S-------------------------SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           S                           + R   MFSAT+ P++  LA+ Y ++   VNI
Sbjct: 474 SMSADNLKPIDEAETIDAGGLEAGAAGTRYRMTYMFSATMPPSVERLARKYLRNPAVVNI 533

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
            S  +    I    + +    ++  +  +L  +    AIVF +T+ +V     +  +  +
Sbjct: 534 GSAGKTSDLIKQVVMWMTRGAKETQLELVLSRYPDTQAIVFVNTKRAVDHVQSLCVKQGY 593

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
            V ++ G  SQ +R ++L+  + G   + +ATDVA RGID+ D++LV++ E+    EN  
Sbjct: 594 SVASIHGGKSQDQREDSLKGFKAGEYDILVATDVAGRGIDVKDIDLVVNYEMPLVIENYT 653

Query: 330 HRSGRTGRAGRKGMSVFVI 348
           HR GRTGRAGR+G +V  I
Sbjct: 654 HRIGRTGRAGRQGTAVSFI 672


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 193/341 (56%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL    
Sbjct: 10  PELV-KALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLNSGK 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G  I
Sbjct: 69  KASRGTAR-GLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+   ++SP+   ++M
Sbjct: 128 LVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   + + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++G+ARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 187/341 (54%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL E+ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLL-ESG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +      AL +APTRELA Q+   ++     T + VA   GG  +  +   L+ G  I
Sbjct: 68  RSASRKTARALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALEGGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    ++++ ++ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVASIEFLVFDEADRILDMGFIHAVRKIMMDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|329941301|ref|ZP_08290580.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299832|gb|EGG43731.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 503

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 8/354 (2%)

Query: 15  LSERGYVNLT---SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           L+E G   LT    +Q A L   L  +DVL   +TGSGKT+AFGLAL   L     R + 
Sbjct: 86  LAELGRNGLTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTAGRRAE 142

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              PL L + PTRELA QV   L        + +A  +GGVS+  + R L+ GA IVV T
Sbjct: 143 PRQPLGLVLVPTRELAQQVTEALTPYARAVRLRLATVVGGVSIGGQMRALRGGAEIVVAT 202

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I   G  +  +   VLDEAD+M D+GF   +  +LD    + + ++FSAT+  
Sbjct: 203 PGRLKDLIDRGGCVLDQVSVTVLDEADQMADMGFMPQVTALLDQVDAQGQRMLFSATLDR 262

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L + Y  D V  ++       + +++  + V  +D+  A   I    G    I+F 
Sbjct: 263 NVDALVRRYLHDPVVHSVDPSAGAVTTMEHHVLHVHGADKHEATTRIAAREG--RVIMFL 320

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +V R T  L     +  AL G  SQ +R+  L   R G   V +AT+VAARGI + 
Sbjct: 321 DTKHAVDRLTAHLLGSGVRAAALHGGKSQPQRTRTLAQFRTGHVGVLVATNVAARGIHVD 380

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
            L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 381 SLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVTPDQRRAMTRLMAAAGI 434


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 173/335 (51%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +    S
Sbjct: 15  ALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLLQLLTLEGPKVDSNS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPG
Sbjct: 75  V-RALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMKLRKGVDLLVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   +  S L+ +VLDEAD MLDLGF ++++ I  + PKKR+ L+FSAT S AI
Sbjct: 134 RLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKRQTLLFSATFSDAI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   + +    V V    +     ++LR +  K  +VF  T
Sbjct: 194 RQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFSHLLRKNRWKQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGLDIEDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            LV++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLV 348


>gi|310799184|gb|EFQ34077.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 603

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 195/352 (55%), Gaps = 25/352 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
            Y   T +Q A     L  +DV+  A+TGSGKT+AF L L   +     R   A     +
Sbjct: 201 AYKKPTPIQSASWPYTLSRRDVIGVAETGSGKTMAFALPLVEGISKIKKRCIKA-----V 255

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            ++PTRELA+Q   ++E + +  G+  ++CI GG S   +R  L+ GA ++V TPGRL D
Sbjct: 256 VVSPTRELAMQTQEQMEHVSSLLGLK-SICIYGGASKDDQRALLRRGADVIVATPGRLKD 314

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITT 195
            +    +++  +K  VLDEAD MLD GF +DI+ IL   P +  R+ +MF+AT   ++  
Sbjct: 315 FMMDGTISLQDVKFAVLDEADRMLDKGFEEDIKMILGDMPAREARQTVMFTATWPASVRK 374

Query: 196 LAKNYQKDAVRVNIASENRQHSD----------IDYRAVLVALSDRDNAIVNILRYHGA- 244
           LA+++  D V+V I S  ++ ++          I  R  +V    ++  ++ +L+   A 
Sbjct: 375 LAESFMVDPVKVTIGSSGKETANGAVELQANTRITQRVEVVDPRAKEQRLLQLLKQWQAT 434

Query: 245 ---KN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              KN   +VFC  +   +R    L +   +V  + G+L Q++R+ +L+  + G   V +
Sbjct: 435 ASQKNDRILVFCLYKKEATRVEAFLQQRGIRVGGIHGDLRQEQRTRSLEAFKAGTTPVLV 494

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++ +  ++
Sbjct: 495 ATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGEAITLFTEH 546


>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
 gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
          Length = 432

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 184/348 (52%), Gaps = 9/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +   
Sbjct: 16  ALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRV------HTDVH 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTREL  Q+  E + L +   V +   IGG ++  + + L     +++GTPG
Sbjct: 70  QEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRRPQVILGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   I
Sbjct: 130 RLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLFSATIPDKI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK Y    + V    ++     ID R  ++   ++   ++ ++       AIVFC+ 
Sbjct: 190 RNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNK 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  +
Sbjct: 250 REGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGI 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
             V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 310 THVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357


>gi|60115443|dbj|BAD90012.1| DEAD box RNA helicase [Tubifex tubifex]
          Length = 396

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 175/329 (53%), Gaps = 8/329 (2%)

Query: 41  LVSAQTGSGKTVAFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L + + +L    E  +FS    P A+ + PTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPVLTGMLRNGVEGGQFSVVQEPQAIIVGPTRELVTQIYNEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T V   V  GGV+   + R++  GAH+VVGT GRL D IR   L+++ +K  +LDEA
Sbjct: 61  AHNTMVRPVVVYGGVTTGYQAREVSKGAHLVVGTAGRLLDFIRKGYLSLAKVKYFILDEA 120

Query: 158 DEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           D MLD+GF  ++  + +     +  +R+ LMFSAT    +  LAK    D + V +    
Sbjct: 121 DRMLDMGFLPNMMALANELGMPAKTERQTLMFSATFPEEVQQLAKELLNDYIFVTVGRVG 180

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             ++DI+   + V   ++   +V+IL   G +  +VF   +         L++  F   +
Sbjct: 181 GANTDIEQHVLQVDQFNKREKLVSILNSQGQQRTLVFVEQKRQADFIASYLSQSEFPTTS 240

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+  Q+ER  AL+  ++G A + +AT VAARG+D+P +  VI+ ++  + +  +HR G
Sbjct: 241 IHGDREQREREEALRDFKNGTAPILVATSVAARGLDIPGVNHVINFDMPQSIDEYVHRIG 300

Query: 334 RTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RTGR G  G +  F  P + Q  A  L +
Sbjct: 301 RTGRCGNLGRATSFFNPSSDQPLARPLVK 329


>gi|157123872|ref|XP_001653950.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882852|gb|EAT47077.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 718

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 194/366 (53%), Gaps = 10/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P V  + +  +G+   TS+Q    +  +  +D++  A+TGSGKT+A+ L  A   ++  
Sbjct: 108 FPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP-ALIHISNQ 166

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +       +  ++     GG S H +  DL+ G  
Sbjct: 167 PRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQADDLRRGVE 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 227 IVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLMWS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRY 241
           AT    I  LA+ + ++ +++NI S N   ++ +   ++    + +       ++  L  
Sbjct: 287 ATWPKEIRKLAEEFLREYIQINIGSLNLAANE-NIMQIIECCEEYEKETRLFKLLTELSQ 345

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G   +I+F  T+  V + T V+  + ++   + G+ +Q++R   L   R  R+ + +AT
Sbjct: 346 QGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRLRSGILVAT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL- 359
           DVA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S  F  P N  +  + + 
Sbjct: 406 DVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTPANGAKAGDLIG 465

Query: 360 -FREAN 364
             REAN
Sbjct: 466 VLREAN 471


>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 525

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 16/388 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L   L A+ D+  P   
Sbjct: 48  LDSRGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQRL-AQQDKARPGH- 105

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L +APTRELA+Q+   +E L     + V    GGVS   + + L+ G  +VV  PGR
Sbjct: 106 PIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGR 165

Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L D + G+GL ++  ++  VLDEAD M DLGF  ++  IL ++P++ + ++FSAT+   +
Sbjct: 166 LLD-LMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRGQRMLFSATLDNGV 224

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L   +    ++ ++         + +R  +VA     + +V  L   G    I+F  T
Sbjct: 225 DALVAEFLHKPLQHSVDPLTSPVDAMTHRVWMVADKTAKDGVVRRL-ASGEGQRILFTRT 283

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L +     V L G +SQ  R  A++    G+  V +ATD+AARGID+  +
Sbjct: 284 KHLARRLARKLVQAGIPAVELQGNMSQNARERAMKAFSTGQVHVMVATDIAARGIDVSGV 343

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L +++ +        
Sbjct: 344 ELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLLKKSRIRA------ 397

Query: 374 SVEAIR-ERDAQRIL----QDPLFLDSI 396
            VE IR + DA  +L     DP+ L+ +
Sbjct: 398 DVERIRPDDDAVAVLVGQVADPVALEDM 425


>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
 gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
 gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 497

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 198/354 (55%), Gaps = 12/354 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKTV+F + L   +  + +   
Sbjct: 14  ILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTVSFAIPLCENINVDCNNIQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V  +   G  S+  +  +L+   HIVV 
Sbjct: 74  ------ALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVHIVVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + PK++ + +FSATI 
Sbjct: 128 TPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATID 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAK 245
             I  + + Y  D   +NI  EN   ++   R +   ++  + R+  I+   ++     K
Sbjct: 188 EEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ +  + +++DVA+
Sbjct: 247 SVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  ++  E +
Sbjct: 307 RGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 61  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 115 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 175 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 235 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 295 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 354

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR G KG+++
Sbjct: 355 NYDLPNNRELYIHRIGRSGRYGGKGVAI 382


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 196/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + + ++ + + T +Q       L  KD++  AQTGSGKT+++ L  A   +  
Sbjct: 102 NFPNYVMDVIGKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSY-LLPAIVHINH 160

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 161 QPFLERGEGPICLVLAPTRELAQQV-QQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERG 219

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  ILD     R+ LM
Sbjct: 220 VEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLM 279

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD V++N+ + +   + +I     +    ++++ ++ +L    
Sbjct: 280 WSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIM 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 340 SEKENKTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +  F  P NM++  +  
Sbjct: 400 TDVASRGLDVEDIKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLV 459

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 460 SVLREANQAI 469


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score =  186 bits (473), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 181/329 (55%), Gaps = 9/329 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLA 77
           G+   +++Q+  + P ++  D +  AQ+G+GKT  F + AL S  ++         +P  
Sbjct: 67  GFEKPSAIQQRAILPIIKGHDTIAQAQSGTGKTATFSIGALQSIDVS-------VKSPQV 119

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q+ + L  L     V V   +G  ++  + R L+ G HIV GTPGR+ D
Sbjct: 120 LILSPTRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRRLEAGVHIVSGTPGRVLD 179

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  K L   H+K ++LDEADEML LGF+  I  +    P   ++++ SAT++  +  + 
Sbjct: 180 LISRKALATRHIKMLILDEADEMLGLGFQQQINDVYRYLPPATQIVLVSATLTQDVINMT 239

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           + +  D VR+ +  +      I    V V   + +   + +I        A++FC+T+  
Sbjct: 240 EKFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIYDSLTITQAVIFCNTKQK 299

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V+  T  + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ ARGID+  + LV
Sbjct: 300 VNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLV 359

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L ++ EN +HR GR+GR GRKG+++
Sbjct: 360 INYDLPNDRENYIHRIGRSGRFGRKGVAI 388


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 164 FPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 222

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 223 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 282

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 283 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 342

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D +  ++ +++    
Sbjct: 343 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDENEKLMKLIKLLTD 398

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 399 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 458

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 459 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 518

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 519 LIQVLREANQTI 530


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 182/345 (52%), Gaps = 19/345 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           YV  T VQ+  +   +  +D++  AQTGSGKT  F   + S         +P        
Sbjct: 219 YVIPTPVQKYSVPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSAAPVQGGGGQF 278

Query: 75  ---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G 
Sbjct: 279 SYGRQRKAYPTSLILAPTRELVSQIFEEARKFAYRSWVRPCVVYGGADIGSQLRQIERGC 338

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRR 181
            ++V TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I++         R+
Sbjct: 339 DLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPVVDNRQ 398

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    I  LA+++ KD + +++        +I  +   V  +D+ + +++IL  
Sbjct: 399 TLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILHT 458

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           HG+    ++F  T+      +  L    F   A+ G+ +Q+ER  AL++ R+GR  + +A
Sbjct: 459 HGSTGLTLIFVETKRMADSLSDFLINQRFPATAIHGDRTQRERERALELFRNGRCPILVA 518

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 519 TAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 563


>gi|148826462|ref|YP_001291215.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittEE]
 gi|189040030|sp|A5UDI1|RHLB_HAEIE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148716622|gb|ABQ98832.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 415

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 183/338 (54%), Gaps = 2/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL   D  
Sbjct: 19  IVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPN 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +A TRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G  I++
Sbjct: 79  LEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILI 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSA 187
           GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ R  ++FSA
Sbjct: 139 GTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTMLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA     D   + I  E +    I       +  D+   ++ ++     +  
Sbjct: 199 TLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEWPERC 258

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 259 IVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 319 LHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 192/338 (56%), Gaps = 10/338 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSP 71
           L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL   A  DR   
Sbjct: 97  LESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKP- 155

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G  +++ T
Sbjct: 156 -EDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIAT 214

Query: 132 PGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSAT 188
           PGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++  R+ L+FSAT
Sbjct: 215 PGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSAT 274

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA 247
           +S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L R  GA+  
Sbjct: 275 LSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSRSEGART- 333

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +ATDVAARG
Sbjct: 334 MVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARG 393

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 394 LHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 431


>gi|221128053|ref|XP_002155499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222669|emb|CBA32460.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 415

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 189/342 (55%), Gaps = 14/342 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+ ++ +   T VQ   + P +  +DVLV AQTGSGKT AF LA+         R++
Sbjct: 12  LAAAMVQQQFSTPTPVQTGAIPPAVAGRDVLVCAQTGSGKTAAFALAVL-------QRWT 64

Query: 71  PASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQN 123
           P +A     P AL + PTRELAVQVG  L  L    G+   ++V  GGVS++ +   L+ 
Sbjct: 65  PPAASGARRPQALVLVPTRELAVQVGGVLSTLARAAGLPAKISVVFGGVSINPQLMALRG 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV T GRL D +    L + H++ +VLDEAD MLDLGF ++++ I    PK+ + L
Sbjct: 125 GTDIVVATTGRLLDLVDHNALQLQHIRCLVLDEADRMLDLGFAEELDRIDALLPKQHQSL 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  +  LA++  ++ + + I  E +   DI  RA+ V  S R   + +++    
Sbjct: 185 LFSATYSAGVRQLAESRLREPLEITIKQEEQAAPDITQRAITVDASRRTQLLRHLVVQEA 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF +T+ +       L     Q      +LSQ +R+  L   +    +V +ATDV
Sbjct: 245 WPRVLVFVATKYAAEMVADKLRRAGLQAEPFHAQLSQGKRTQVLADFKASVVQVVVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  L +V++ +L  +  + +HR GRT RAG+ GM+V
Sbjct: 305 AARGVDIAGLPVVVNFDLPRSATDYVHRIGRTARAGQAGMAV 346


>gi|307261010|ref|ZP_07542692.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869312|gb|EFN01107.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 406

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L   D+   AQTG+GKT+AF +A+   LL  ND  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTLAFLIAVFHYLLT-NDSATNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQIQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  V I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 RVRELAYEDMDNAQYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWGYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDCEDYIHRIGRTGRAGESGHSI 354


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 180/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA A     
Sbjct: 208 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFG 267

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 268 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 327

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I++     +  +R+ 
Sbjct: 328 LLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQT 387

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 388 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 447

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 448 GTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 507

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 508 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 551


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA A     
Sbjct: 207 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFG 266

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 267 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 326

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++         R+ 
Sbjct: 327 LLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQT 386

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 387 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 446

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 447 GTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 506

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 507 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 550


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 180/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA A     
Sbjct: 208 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFG 267

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 268 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 327

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I++     +  +R+ 
Sbjct: 328 LLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQT 387

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 388 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 447

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 448 GTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 507

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 508 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 551


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/317 (37%), Positives = 182/317 (57%), Gaps = 14/317 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEW 96
           +D +  A+TGSGKT+A+G+     +L++    S  S  PL L +APTRELA Q+   L  
Sbjct: 152 RDFIGIAKTGSGKTLAYGIPAVMHVLSKRKGASANSVNPLCLVLAPTRELADQISVVLRD 211

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV---V 153
                GV      GG S   +   L++G  IV+ TPGRL D I    +NI HL  V   V
Sbjct: 212 AGEPCGVRSVCLYGGTSKGPQISSLKSGVDIVIATPGRLKDLIE---MNICHLMEVSFLV 268

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASE 212
           LDEAD MLD+GFR ++  IL  +   R+M+MFSAT    +  LA+ Y  ++ ++V + SE
Sbjct: 269 LDEADRMLDMGFRQEVRSILSKTCSARQMIMFSATWPLDVHNLAEEYMDRNPIKVVVGSE 328

Query: 213 NRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAK--NAIVFCSTRASVSRFTKVLAEH 267
           +   ++ D   ++  L D  RD  ++ +L +YH  +    +VF   +    R   +L   
Sbjct: 329 DTA-ANHDVMQIVEVLDDHLRDKRLLALLEKYHKTQRNRVLVFALYQKEAERLDGMLHRS 387

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            + VV++ G  +Q++R+ AL + + G   + +ATDVAARG+D+PD+E+VI+       E+
Sbjct: 388 GWNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGLDVPDVEVVINYSFPLTTED 447

Query: 328 LLHRSGRTGRAGRKGMS 344
            +HR GRTGRAG+KG++
Sbjct: 448 YVHRIGRTGRAGKKGVA 464


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 198/349 (56%), Gaps = 11/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALVA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              A  DR  P   P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  
Sbjct: 73  NRPALADR-KPED-PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 121 LQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ 
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLG 250

Query: 238 IL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L R  GA+  +VF +T+  V R  ++L  H ++V  LSG++ Q++R + L   + G+  
Sbjct: 251 LLSRSEGART-MVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|125556650|gb|EAZ02256.1| hypothetical protein OsI_24355 [Oryza sativa Indica Group]
          Length = 426

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 193/370 (52%), Gaps = 25/370 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D         AL
Sbjct: 60  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD--YAVVECQAL 113

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 114 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----------------ILDSSPKKRRM 182
           +R + L   ++K  VLDEADEML  GF+D ++F                I  SS ++  +
Sbjct: 174 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQLDFLGACFIDVIQSLLRFMISSSSSRQDPV 233

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+ P    + + +    VR+ +    R    +++   +     + + + ++    
Sbjct: 234 GVFSATMPPEALEITRKFMNKPVRILV---KRDELTLEFYVNVEKEEWKLDTLCDLYETL 290

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD
Sbjct: 291 AITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 350

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R 
Sbjct: 351 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRF 410

Query: 363 ANVSVVWEPA 372
            NV +   PA
Sbjct: 411 YNVVIEELPA 420


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL E+GY   + +Q   +   +  +DV+ +AQTG+GKT  F L +   L   N  
Sbjct: 24  QPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLERL---NHG 80

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             P    + AL + PTRELA QV   +        +   V  GGV ++ + + LQ G  +
Sbjct: 81  ARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQKGVDV 140

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D ++   +    ++ +VLDEAD MLD+GF  DI  ++   P +R+ LMFSA
Sbjct: 141 LVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDIRRVISRLPDRRQTLMFSA 200

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA       V++ +A  N+    ++       ++ + + + +++R       
Sbjct: 201 TFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQVVHPCDMARKVDLLSHLIRSGEWLQV 260

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R    L++      A+ G  SQ  R+ ALQ  +DG  RV +ATD+AARG
Sbjct: 261 LVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAARG 320

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++
Sbjct: 321 IDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLV 361


>gi|323494307|ref|ZP_08099419.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311470|gb|EGA64622.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 447

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/328 (35%), Positives = 184/328 (56%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +   FS A  P A+ +APT
Sbjct: 29  TEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKDPRAVILAPT 86

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  EL  +         + +GG + + + + L+     +V TPGRL DH+  + 
Sbjct: 87  RELAKQVYGELRSMLGGLTYDATLIVGGENFNDQVKALRRYPKFIVATPGRLADHLEHRS 146

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA-ITTLAKNYQ 201
           L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A +  +A    
Sbjct: 147 LFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVNDIAFEML 206

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
               R+ I + + +H DI  +  L    D   AI+  +L+    K  I+F +TRA   R 
Sbjct: 207 DAPKRIAIGAGSEEHKDITQKFYLCDHLDHKEAILERVLQEADYKQLIIFTATRADTERL 266

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T  L E   + VALSG L+Q +R+  +        ++ + TD+A+RG+D+ ++  V++ +
Sbjct: 267 TAKLNEKKLKAVALSGGLTQTQRNTIMSQFERAVFKILVTTDIASRGLDIANVTHVVNFD 326

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG KG +V ++
Sbjct: 327 MPKHTEEYVHRVGRTGRAGNKGDAVSLV 354


>gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
 gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
          Length = 434

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 178/335 (53%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  ++ +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  ++L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4]
 gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
          Length = 434

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 177/335 (52%), Gaps = 4/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +  
Sbjct: 12  ILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+Q+G   +      GV  AV  GGV    +   L+ G  +++ 
Sbjct: 70  --KGIKALILTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVDALKRGVQVLIA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+ 
Sbjct: 128 TPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA +   +  +V +   +     I      V   ++ + ++++L+    ++ ++F
Sbjct: 188 SEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEIESVLIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K+L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+
Sbjct: 248 TRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 308 NQLSHVINYELPNISETYVHRIGRTGRAGHDGIAI 342


>gi|169853351|ref|XP_001833356.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
 gi|116505566|gb|EAU88461.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
          Length = 748

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 38/373 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           +IPQVI + +   GY   + +Q   +   L+ +DV+  A+TGSGKT AF + + + +L  
Sbjct: 327 DIPQVILDCIERIGYKEPSPIQRQAIPIGLQNRDVIGIAETGSGKTAAFVIPMLAFILTL 386

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +++R      P AL +APTRELA Q+  E +      G      +GG +V  ++ +
Sbjct: 387 PIFTDDNRHL---GPYALILAPTRELAQQIESETKKFATPLGYKCVSIVGGRAVEEQQFN 443

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--- 177
           L+ GA I++ TPGRL D +    L +S  + +V+DEAD M++LGF  D+ FILD  P   
Sbjct: 444 LREGAEIIIATPGRLKDVLERHVLVLSQCRYIVMDEADRMVNLGFEADLTFILDQLPTDT 503

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R   +FSAT+ PA+  LA+ Y K    + I    R  
Sbjct: 504 MEGEEQGEKMDVDGETMVKKGRTRVTTLFSATMPPAVERLARKYLKKPATITIGEAGRAV 563

Query: 217 SDIDYRAVLVALSDRDNA----IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
             ++ +   V   ++       I+N   Y  A   IVF + + +     K L+   +   
Sbjct: 564 DTVEQKVEFVNGDEKKKQRMLDILNSGLY--APPIIVFVNQKKTADMVAKDLSRAGWSTS 621

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L    +Q++R  ALQ +R G A + +ATD+A RGID+ D+ LVI+ ++++  E  +HR 
Sbjct: 622 TLHSGKNQEQREAALQALRTGDADILVATDLAGRGIDVQDVTLVINYQMANTIEAYVHRI 681

Query: 333 GRTGRAGRKGMSV 345
           GRTGRAG+ G ++
Sbjct: 682 GRTGRAGKLGTAI 694


>gi|221134543|ref|ZP_03560848.1| DEAD/DEAH box helicase-like protein [Glaciecola sp. HTCC2999]
          Length = 452

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 194/346 (56%), Gaps = 5/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   L+ + +   T VQ   +   +  +D+L  ++TGSGKT AF L +   L+ +
Sbjct: 13  NLDHRIVTTLTNKHFTEPTPVQANTIPYAMIGRDILCCSKTGSGKTFAFVLPIIHRLMNQ 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+   A  AL +APTRELA QV  E+  L +   +   + +GG + + + + L++  
Sbjct: 73  KS-FAKRDAR-ALILAPTRELAKQVYLEVRALVSALPLKAQLVVGGENFNDQVKALRHNP 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF-RDDIEFILDSSPKKRRMLM 184
            I+VGT GR+ DH+ G+ + ++ L+ +V DEAD MLDLGF +  +E    +  +KR+ ++
Sbjct: 131 QIIVGTAGRVADHLSGRTVFLNGLEILVYDEADRMLDLGFAKQLLEINQAADHRKRQTML 190

Query: 185 FSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYH 242
           FSAT+ SP++T L     K   ++ + S    HSDI  +       +  +A++  IL   
Sbjct: 191 FSATLDSPSLTHLTDTLLKQPEKIMLDSSFTIHSDITQQWYFADHIEHKHALLAAILNEV 250

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVFC+TR    R   +L E     +ALSG+L Q +R++ +     G+  V + TD
Sbjct: 251 EHNQAIVFCATREDTVRLKDLLNEANLDAIALSGDLLQNQRAHVMSSFISGQHSVLVTTD 310

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+D+  + LV++ +L    E  +HR GRTGRAG KG+++ ++
Sbjct: 311 VASRGLDMKKVSLVVNFDLPKLAEEYVHRIGRTGRAGAKGLAIALV 356


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 92  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 150

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 151 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 209

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 210 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 269

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++  D V++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 270 WSATWPKEVRQLAEDFLHDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 329

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 330 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 389

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 390 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 449

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 450 KVLEEANQAI 459


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y+  T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA A     
Sbjct: 206 YLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQNGPSPTPAPAGGQLG 265

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 266 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 325

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++         R+ 
Sbjct: 326 LLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQT 385

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 386 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 445

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 446 GTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 505

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAA G+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 506 AVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 549


>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 500

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 192/367 (52%), Gaps = 10/367 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPA 72
           A+ E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L A    R S  
Sbjct: 15  AVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQRLSASKPVRDSRG 74

Query: 73  S-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             A  AL + PTRELA QV   +        +   V  GGV +  +   L+ G  I+V T
Sbjct: 75  RIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQIDRLRKGVDILVAT 134

Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGRL DH  G+G L++S ++ +VLDEAD MLD+GF  DI+ +L   P+K++ L+FSAT S
Sbjct: 135 PGRLLDH-HGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLPQKKQSLLFSATFS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA         + +A  N     I  +   V    +   + +++R       +VF
Sbjct: 194 DEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKELLAHLIRQGDWHQVLVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   +R  + L E     +A+ G  SQ  R+ AL   + G  +V +ATD+AARGID+
Sbjct: 254 TRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQVLVATDIAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF-REANVS 366
             L  V++ EL + PE+ +HR GRTGRAG  G +V ++  + +   R  +RL  RE  V 
Sbjct: 314 DQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEIFLRDIQRLIKREIPVQ 373

Query: 367 VV--WEP 371
           V+  +EP
Sbjct: 374 VIPGFEP 380


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 131/384 (34%), Positives = 202/384 (52%), Gaps = 21/384 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E GY   T +Q   +   +   D++ SAQTG+GKT  F L   + L   
Sbjct: 7   NLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALNLLATP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           ++  S +  P  L + PTRELA QV  E    Y K      V I GG+    + + L   
Sbjct: 67  HE--SRSRGPRILVLTPTRELAAQVN-EAARKYGKFLRARTVSIVGGMPYPLQNKLLSQP 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  D+E I +    +R+ L+
Sbjct: 124 LDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           FSAT+   I  +A+   K+   V +A++  +H++I+ R   V  ++ ++  + ++L    
Sbjct: 184 FSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLLIAPE 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELSQQERSNALQMMRDGRARVCI 299
               I+F ST+    R   VLAE L+    +  AL G+++Q  R+  L  +R G  +V +
Sbjct: 244 VNQTIIFTSTK----RHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRA   G+++     NM R   R 
Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAI-SFASNMDRHLLRK 358

Query: 360 FR-------EANVSVVWEPAPSVE 376
                    EA+V   +EP   V+
Sbjct: 359 IEQYTGNRLEASVIEGFEPKRPVK 382


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 184/349 (52%), Gaps = 4/349 (1%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S+ GY   T +Q   +   L  +D++  AQTG+GKT AF L +   L A N +  P    
Sbjct: 18  SKLGYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQL-AANPQQPPRGGA 76

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L ++PTRELA Q+      L ++  + VAV  GGV    + R LQ G  ++V TPGRL
Sbjct: 77  RVLVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGRL 136

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+     ++   +  VLDE D+MLDLGF   I  I+ + P++R+ L FSAT+   I  
Sbjct: 137 VDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIAK 196

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA +  K+  +V++    +    ++ + + V    + + +V++L        I+F  T+ 
Sbjct: 197 LAADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLLADAKMARTIIFTRTKR 256

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              +  + L        A+ G  SQ +R  +L   R GR R  +ATD+AARGID+  +  
Sbjct: 257 GADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVTH 316

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFR 361
           V++ +L   PE  +HR GRT RAG +G+++ +     +++ R  ERL R
Sbjct: 317 VVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNIERLTR 365


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 14/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEN 66
           PQV+      +G+   + +Q       L  +D +  A TGSGKT+AFG+ AL        
Sbjct: 103 PQVLDCC---KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMG 159

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ +    P  L ++PTRELA Q+   L    A  G+      GG S   +   L++G  
Sbjct: 160 EKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVD 219

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+ +MFS
Sbjct: 220 IVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFS 279

Query: 187 ATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYH 242
           AT  PA+  LA+ +   + ++V I SE+   ++ D   ++  L D  RD+ +V +L +YH
Sbjct: 280 ATWPPAVHQLAQEFMDPNPIKVVIGSEDLA-ANHDVMQIVEVLDDRSRDSRLVALLDKYH 338

Query: 243 GAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            A+    +VF   +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IA
Sbjct: 339 KAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++  F   +N     E  
Sbjct: 399 TDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELV 458

Query: 358 RLFREAN 364
            + REA 
Sbjct: 459 NVLREAG 465


>gi|19552665|ref|NP_600667.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390333|ref|YP_225735.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|145295583|ref|YP_001138404.1| hypothetical protein cgR_1510 [Corynebacterium glutamicum R]
 gi|21324218|dbj|BAB98843.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325670|emb|CAF21459.1| Superfamily II DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845503|dbj|BAF54502.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 448

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 128/376 (34%), Positives = 190/376 (50%), Gaps = 7/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   L  +G      +QEA +   L  KDVL    TGSGKT  FGL +  T LA +
Sbjct: 9   LPDEIVRELRSQGITEAFPIQEAAIPDALAGKDVLGRGPTGSGKTFTFGLPMI-TRLARS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P  L + PTRELA QV   L+      G+ V   +GGV+++R    L     
Sbjct: 68  GASKPGR-PRGLVLVPTRELAAQVRERLDDPARVMGLRVLEVVGGVNINRNITALATPVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR  D I  K L+++ +    LDEAD+M D+GF   ++ ++D +PK  + L+FS
Sbjct: 127 ILVATPGRAQDLINQKKLSLADVSVTALDEADQMADMGFLPQVKKLMDLTPKNGQRLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   ++ L   Y  + +  + A        +++  +LV   D  N++V  +     K 
Sbjct: 187 ATLDGDVSKLVDRYLHNPITHSTAPVQAAVDTMEHYRLLVGGRDPRNSVVLSIAAREGKT 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V R  K L       V + G+  Q  R+NAL    DG   V +ATD+AAR
Sbjct: 247 -IMFMRTKHGVDRQVKKLRRVGVNAVGIHGDKGQSTRTNALAGFADGSIPVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++     +    LF++A V+
Sbjct: 306 GIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGTSGTVVTLVMDEQIKEVRELFQKAGVT 365

Query: 367 V----VWEPAPSVEAI 378
                V E +P +  I
Sbjct: 366 AAEVKVNENSPELAKI 381


>gi|226365888|ref|YP_002783671.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244378|dbj|BAH54726.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 473

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70
           +AL+++G  +   +Q   L   L  +DVL   +TGSGKT+AF + + S L  E    +  
Sbjct: 22  KALADKGITSPFPIQVDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 81

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P+ L +APTRELA Q+   LE L A   + V    GGVS +R+   L+ G  IVV 
Sbjct: 82  PGR-PVGLILAPTRELATQITATLEPLAAAYDLRVTTIFGGVSQNRQVNALKAGVDIVVA 140

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D ++ K +++  ++  VLDEAD M DLGF   +  IL+++P++ + L+FSAT+ 
Sbjct: 141 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILNATPQQGQRLLFSATLD 200

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K + K+ V  ++   N   + + +    V   +    +V  L   G    I+F
Sbjct: 201 NGVDKLVKRFLKNEVLHSVDEANSPVAAMTHHVFDVDGVEAKRKLVERL-ASGTGRRILF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L E     V L G LSQ  R   L     G ARV +ATDVAARG+ +
Sbjct: 260 MRTKHQARKLARQLTEAGIPSVDLHGNLSQAARDRNLASFSAGEARVLVATDVAARGVHV 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            D++LV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R+A + V 
Sbjct: 320 DDVQLVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAVLMRKAAIKVT 377


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 193/359 (53%), Gaps = 6/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+   E    + +   + +Q       L  +D++  AQTGSGKT+A+ L  A+  +++
Sbjct: 100 NFPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLP-AAIHMSD 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +      P+ + +APTREL  Q+ +   EW      +  A   GGVS   +   LQ G
Sbjct: 159 QPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQGG 218

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI + TPGRL D +    +N+     +VLDEAD MLD+GF   I  I+D +   R+ +M
Sbjct: 219 AHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQTVM 278

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR--- 240
           +SAT    +  LA+ +  D V++ + SE+   +    + V V    +++  ++  LR   
Sbjct: 279 WSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLREIN 338

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  ++F +T+A V    + L ++ F+ VA  G+LSQ +R  AL   R G+  + +A
Sbjct: 339 AEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPILVA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+ D++ VI+ +     E+ +HR GRTGR+ R G ++ +   +   +A++L
Sbjct: 399 TDVAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQL 457


>gi|326527675|dbj|BAK08112.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 843

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/354 (37%), Positives = 192/354 (54%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA----END 67
           +AL++ GY++ T VQEA L   L  KDVLV A+TG+GK+VAF L A+ S L A     N 
Sbjct: 387 KALTDAGYIHTTVVQEAALPICLEGKDVLVKAKTGTGKSVAFLLPAIESVLNAMKSHTNH 446

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           R SP     AL + PTREL VQV  E   L     GV V   IGG     ++R L+ +  
Sbjct: 447 RVSPI---FALVLCPTRELVVQVTAEANVLVKYHHGVGVQSLIGGTRFKLDQRRLESDPC 503

Query: 126 HIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI  +    + +  LK +VLDEAD +LDLGFR DIE I DS P++R+ 
Sbjct: 504 QILVATPGRLLDHIENRSSFSVRLMGLKLLVLDEADHLLDLGFRKDIEKIADSLPRQRQT 563

Query: 183 LMFSATISPAITTLAKN-YQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSATI   +  +++    KD V V+          + +  + ++V      + +  +L
Sbjct: 564 LLFSATIPKEVRRVSQMVLNKDHVFVDTVGLGAVETPTKVQQQYLVVPHELHFHMVHRLL 623

Query: 240 RYHGAK----NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           R H  +      IVFC+T A V+ F  ++   L   V  +     Q  R+   +  RD  
Sbjct: 624 REHIDQEVDYKVIVFCTT-AMVTEFMYIMLRDLKLNVREIHSRKPQLYRTRISEEFRDSN 682

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + + +DV+ RG++ PD+ LVI A +    E+ +HR GRTGR G+ G  + +I
Sbjct: 683 RLILVTSDVSTRGVNYPDVTLVIQAGVPPGREHYIHRLGRTGREGKSGKGILLI 736


>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 184/348 (52%), Gaps = 9/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +   
Sbjct: 16  ALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRV------HTDVH 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTREL  Q+  E + L +   V +   IGG ++  + + L     +++GTPG
Sbjct: 70  QEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRRPQVILGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   I
Sbjct: 130 RLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLLFSATIPDKI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK Y    + V    ++     ID R  ++   ++   ++ ++       AIVFC+ 
Sbjct: 190 RNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNK 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  +
Sbjct: 250 REGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGI 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
             V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 310 THVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 191/365 (52%), Gaps = 26/365 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E + + GY   T +Q A +   L+ +D++  A TGSGKT +F L L   +  L 
Sbjct: 371 LPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELP 430

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E        G  V   +GG S   +   L+
Sbjct: 431 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLR 490

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 491 NGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 550

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          + R+ +M++AT+  A+  +A+ Y +    V I S       ++ R
Sbjct: 551 PDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 610

Query: 223 AVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             ++A  D R   + +IL     +   IVF + + +     + + +  F  V L G  +Q
Sbjct: 611 VEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSKTQ 670

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 671 EQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRIGRTGRAGK 730

Query: 341 KGMSV 345
            G+++
Sbjct: 731 SGVAI 735


>gi|10039331|dbj|BAB13308.1| vasa-related protein CnVAS2 [Hydra vulgaris]
          Length = 890

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 179/332 (53%), Gaps = 9/332 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDRFSPASA 74
           Y   T +Q+  +   L ++DV+  AQTGSGKT +F L + + L+ E     +      + 
Sbjct: 470 YKEPTPIQKYAIPAILAKRDVMACAQTGSGKTASFLLPIITNLMNEGLDNIDSNIDGVAL 529

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLA  +APTREL VQ+  E       + +   V  GGV+V  +   L+ G H++V TPGR
Sbjct: 530 PLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVAVAHQADRLRMGCHLLVATPGR 589

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATIS 190
           L D I+   +N  +LK ++LDEAD+M+D+GF   IE I++ S  P K  R  LMFSAT  
Sbjct: 590 LEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHIIEFSGMPPKGIRNTLMFSATFP 649

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA  +  D + + +       +D+    + V+ + +   + N+L+  G    +VF
Sbjct: 650 DQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGTKKRETLENLLQTSGTDQTLVF 709

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +         L++  F    L  + ++++R +AL+  R+G A + +AT VAARG+D+
Sbjct: 710 VEKKRDADFLANFLSQKNFPPTILFADRTREKRESALRDFRNGIAPILVATAVAARGLDI 769

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            D++ VI+ +L  +    +HR GRTGR G KG
Sbjct: 770 NDVKHVINYDLPKDANEYVHRIGRTGRIGNKG 801


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 137/441 (31%), Positives = 209/441 (47%), Gaps = 25/441 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + L+ E
Sbjct: 276 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHLMRE 335

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 336 GVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHSIRQIV 395

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 396 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 455

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    V +    +   +V 
Sbjct: 456 QRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKREKLVE 515

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 516 ILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 575

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 576 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 635

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G+    VD    K      
Sbjct: 636 QPL-----VKVLTDAQQDVPAWLEEIAFSTYT-PGFSGSTRGNMFASVDTRKGKS----- 684

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
                 ++ AG    +  TPV
Sbjct: 685 -----TLNTAGFSTSQTPTPV 700


>gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
 gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 193/347 (55%), Gaps = 10/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           ++P  +   +   G+   T +Q A L   LR  D++  AQTG+GKT AF +++ S LL  
Sbjct: 62  DLPLPLLRGIQTAGFQYCTPIQGASLPHTLRGHDMVGKAQTGTGKTAAFLVSIISDLLKH 121

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E++R+       AL +APTRELAVQ+G + E L   T + V   +GG+   ++   ++
Sbjct: 122 PVEDERY--IGEARALILAPTRELAVQIGEDAEQLVQHTDLKVHTLVGGMDYAKQLHKIK 179

Query: 123 NGAH--IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
             AH  I+VGTPGRL D    K +++  ++ +V+DEAD MLD+GF   +  ++ ++P K 
Sbjct: 180 R-AHCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRMLDMGFIPQVRRLVRATPPKE 238

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT +  +  L++ +    V++ +  E      ++ +  +   +++   + NI
Sbjct: 239 DRQTLLFSATFTDDVMRLSEQWTDKPVKLEMEPERVATDTVEQKIFITTANEKFALLQNI 298

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    K+ +VF + R       + L +  F+V  ++G++ Q  R   L+  + G  +V 
Sbjct: 299 LKSDDVKSVMVFANRRDICRTLFERLKKQGFKVGLIAGDVPQARRMKTLEGFKSGALKVM 358

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVA RGI +  +  VI+  L   PE+ +HR GRTGRAG  G+S+
Sbjct: 359 VATDVAGRGIHVNGVSHVINFTLPEEPEDYVHRIGRTGRAGETGISI 405


>gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 450

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 181/340 (53%), Gaps = 6/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E GY   + +Q+  +   L   D++ +AQTG+GKT  F L L   L     R +
Sbjct: 12  ILTAIKESGYSKPSPIQQQAIPAILESNDIMAAAQTGTGKTAGFTLPLLEIL----SRGA 67

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            A+A    AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  I+
Sbjct: 68  KANANQVRALVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRLRKGTDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    K +    L+ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FSAT
Sbjct: 128 VATPGRLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LAK    + V V+++  N     + +    V   ++   +++++     + A+
Sbjct: 188 FSDDIRQLAKGLMNNPVEVSVSPANAATPTVKHLLHPVDKKEKTALLIHLIVTQDWQQAL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  + L +      A+ G  SQ  R+ AL   ++   R+ +ATD+AARGI
Sbjct: 248 VFSRTKHGANKIVQKLNDAGISAAAIHGNKSQGARTKALADFKNSDIRILVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++
Sbjct: 308 DIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAVSLV 347


>gi|322488402|emb|CBZ23648.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 415

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 174/329 (52%), Gaps = 4/329 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I +   + G+   T +Q       L  +D++  A+TGSGKT+AF +  A  ++A+  
Sbjct: 10  PDAIHQGFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPAALHIMAQPP 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
              P   P+AL +APTRELAVQ+  E      +   ++  C+ GG     ++R L+ G H
Sbjct: 70  -LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQQRALRAGVH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I       R+ LMFS
Sbjct: 129 VCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIRTDRQTLMFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  +  ILR  G +
Sbjct: 189 ATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKMEEILRQVGPQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +VF  T+ S       L   L Q V+A+ G+  Q  R   L   R     + +ATDVA
Sbjct: 249 RVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDERAILVATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG 333
           ARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 309 ARGLDIKDLDVVVNYDMPLNIEDYVHRIG 337


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 195/366 (53%), Gaps = 9/366 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 108 IQAFEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILP- 166

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A+  +    R +    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 167 ATVHINHQPRLNRGDGPIVLILAPTRELAQQI-QTVARDFGSSSCIRNTCIFGGSPKGPQ 225

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 226 ARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 285

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S +   + +I     +    +++  + 
Sbjct: 286 PDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEICQEHEKEYKLS 345

Query: 237 NILRYHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +LR  G +     I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G
Sbjct: 346 QLLREIGTERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDYVLSEFRNG 405

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  
Sbjct: 406 KTMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNA 465

Query: 354 RRAERL 359
           R+A+ L
Sbjct: 466 RQAKEL 471


>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
 gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
          Length = 463

 Score =  186 bits (473), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 194/347 (55%), Gaps = 8/347 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + Q + + L+E      + VQ   +   ++ K VL  +QTG+GKT+A+ L L   
Sbjct: 5   FESLGVEQDLLDKLTEHEITQPSPVQAEAIPEIIKGKHVLARSQTGTGKTLAYLLPLLQA 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +        A   L +AP++ELA+Q+ RE +      G+ V   IGG ++ R+   L
Sbjct: 65  IDPQK------KATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++   +VVGTPGR+ + I  K L + ++ A+V+DE D+M  LG   D+  IL ++ + R+
Sbjct: 119 KDHPQLVVGTPGRVRELIASKKLKMHNITAIVIDEVDQMFQLGGAGDVTNILGTAQRDRQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++  SAT++  I +LAK   +D V + I  + +  S +++   +    D+ + +  ++R+
Sbjct: 179 LVFLSATLNDEIQSLAKREMRDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRH 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + A+VF +T  ++      L        +L G+  +  RSN L   R+ + +V +A+
Sbjct: 239 FNPRKALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKVLVAS 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+  LE+VIH + +++ +  +HR+GRTGR GRKG+   V+
Sbjct: 299 DVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVASVV 345


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 180/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA A     
Sbjct: 210 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFG 269

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 270 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 329

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I++     +  +R+ 
Sbjct: 330 LLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQT 389

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 390 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTH 449

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R GR  + +AT
Sbjct: 450 GTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGRCPILVAT 509

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 510 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 553


>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 429

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 181/343 (52%), Gaps = 14/343 (4%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +   L    D F      
Sbjct: 24  SQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKL--SEDPF----GI 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA Q+  +   L    G+   + IGG+ +  +  +L    HIV+ TPGRL
Sbjct: 78  FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHIVIATPGRL 137

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISP 191
            DHIR     +I  ++ +V+DEAD +L+ G   F  D++ IL++ P +R+ L+FSAT++ 
Sbjct: 138 ADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLLFSATLTD 197

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNA 247
            +  L              SE R    +D R +LV    +D  +V +++     H   + 
Sbjct: 198 TLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSI 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +T  +      +L E  F  VAL   + Q++R  AL   +    ++ IATDVAARG
Sbjct: 258 MIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q
Sbjct: 318 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQ 360


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 188/359 (52%), Gaps = 6/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++  GY   T +Q+  +   +   D++ +AQTG+GKT AF L     L   
Sbjct: 7   NLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQRLSTP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +    P   P  L + PTRELA Q             +     +GG+    + R L    
Sbjct: 67  SS--VPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLLSAPV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+    + ++ L+ +VLDEAD MLD+GF +D+E I+ ++P++R+ LMF
Sbjct: 125 DLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQERQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGA 244
           +AT+   +  LA+   ++  R+ +A     H  I+ R  V   L  +   + +++   G 
Sbjct: 185 TATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKELLRHLVSDKGL 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+       + L+        L G+++Q  R+  ++ MR G  R+ +ATDVA
Sbjct: 245 TRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRLLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           ARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++ FV P  +    R ER  
Sbjct: 305 ARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLERIERFI 363


>gi|327403398|ref|YP_004344236.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327318906|gb|AEA43398.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 443

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 183/347 (52%), Gaps = 16/347 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL E GY   T++Q A  +  +  KDV+  AQTG+GKT+A+ L   S     
Sbjct: 7   NIKKPILTALDELGYTTPTTIQSAGFSVMMSGKDVIGLAQTGTGKTLAYLLPTLSLW--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  L I PTREL VQV RE+E L     + V    GG +++ +   +  G 
Sbjct: 64  --KFSKEPHPQILIIVPTRELVVQVVREVEKLTPHMNLAVGGVYGGANINTQASMVLQGL 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ D      L + H K VV+DE DE L LGFR  +  I D  P+KR+ L+F
Sbjct: 122 DVLVGTPGRIFDLTANGSLQLKHAKKVVIDEVDETLSLGFRPQLMRIFDLLPEKRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +      + ++ +RV  A        I   A+ V       + VN+L++    
Sbjct: 182 SATLSEEVEGFLGVFFENPIRVEAARVGTPLEKIKQEAIAVP---NFTSKVNLLKHMLET 238

Query: 246 N-----AIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVC 298
           N      +VF S+R    +  + L E +F  ++  +    +Q  R NA+   ++G  RV 
Sbjct: 239 NQDMSRVLVFVSSRVFADKLYEEL-EPVFGVELGVIHSSKAQNFRFNAVNHFQNGIYRVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IATD+ ARGID+ D+  V + ++  N EN +HR GRTGR  ++G ++
Sbjct: 298 IATDLIARGIDVTDVTHVFNFDIPDNQENYIHRIGRTGRQDKEGHAI 344


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 9/361 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 102 FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINHQ 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++ + Y K+  + + C+ GG     + RDL+ G 
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQV-QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGV 219

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 220 EICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 279

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++NI +     +    + V V + +++DN ++ ++    A
Sbjct: 280 SATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMA 339

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 340 EKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLF 360
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+ R+A  L 
Sbjct: 400 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL-RQARDLV 458

Query: 361 R 361
           R
Sbjct: 459 R 459


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 655


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 52  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 106 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++ + SAT+   I  +  
Sbjct: 166 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 226 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+  + L+I
Sbjct: 286 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLII 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 NYDLPNNRELYIHRIGRSGRYGRKGVAI 373


>gi|307331142|ref|ZP_07610269.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883222|gb|EFN14281.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 507

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 129/362 (35%), Positives = 193/362 (53%), Gaps = 9/362 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  ALS  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    + 
Sbjct: 76  MPSALLAALSAEGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ- 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ G  
Sbjct: 135 -RAEPRQ-PLALVLVPTRELAQQVTDALTPYARPLKLRLATVVGGMSIGRQSSALRGGVE 192

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
           +VV TPGRL D I G+G   ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 193 VVVATPGRLKDLI-GRGDCRLNRVDITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHATTTEIAAREG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +I+F  T+ +V   TK L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 310 -RSIMFLDTKHAVDNLTKHLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A 
Sbjct: 369 ARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRRTMNRLMADAG 428

Query: 365 VS 366
           ++
Sbjct: 429 IT 430


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 241 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 300

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 301 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 358

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 359 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 418

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 419 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 478

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 479 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 537

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 538 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 597

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 598 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 636


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 195/362 (53%), Gaps = 9/362 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 101 QFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++ + Y K+  + + C+ GG     + RDL+ G
Sbjct: 160 QPYLERGDGPICLVLAPTRELAQQV-QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERG 218

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 219 VEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 278

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D V++NI +     +    + V V + +++DN ++ ++    
Sbjct: 279 WSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIM 338

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 339 AEKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+ R+A  L
Sbjct: 399 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL-RQARDL 457

Query: 360 FR 361
            R
Sbjct: 458 VR 459


>gi|24372719|ref|NP_716761.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24346781|gb|AAN54206.1|AE015557_12 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 447

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 184/335 (54%), Gaps = 10/335 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----NDRFSPASAPLAL 78
           T VQ+  +   L  +D+L  +QTGSGKT AFGL L   L  +       +  PA+ PLAL
Sbjct: 40  TRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIVVGTPGR 134
            + PTRELA+QV   L  L ++      + I    GGV++ ++  DL     +VV TPGR
Sbjct: 100 VLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVALEQQLADLSAKPQLVVATPGR 159

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D      +++  +K +VLDEAD +L++GF  D++ ++   PK+++ L+FSAT+  A+ 
Sbjct: 160 LLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKLMAMMPKRKQTLLFSATLPEALD 219

Query: 195 TLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           +LA K    D ++V  ++ N    +I+ +  LV    +  A++ +L+ +     +VF S 
Sbjct: 220 SLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISA 279

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R       K L +      AL GE  Q  RS  L   +  R +V +ATD+ ARGI +  L
Sbjct: 280 RDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDAL 339

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +VI+ +L ++    +HR GRT RAG KG+++ ++
Sbjct: 340 PVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374


>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 482

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 181/343 (52%), Gaps = 14/343 (4%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +   L    D F      
Sbjct: 21  SQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKL--SEDPF----GI 74

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA Q+  +   L    G+   + IGG+ +  +  +L    HIV+ TPGRL
Sbjct: 75  FCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRKPHIVIATPGRL 134

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISP 191
            DHIR     +I  ++ +V+DEAD +L+ G   F  D++ IL++ P +R+ L+FSAT++ 
Sbjct: 135 ADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQRQTLLFSATLTD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNA 247
            +  L              SE R    +D R +LV    +D  +V +++     H   + 
Sbjct: 195 TLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQKFQDEHEDWSI 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +T  +      +L E  F  VAL   + Q++R  AL   +    ++ IATDVAARG
Sbjct: 255 MIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFKILIATDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q
Sbjct: 315 LDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQ 357


>gi|308497408|ref|XP_003110891.1| CRE-DDX-23 protein [Caenorhabditis remanei]
 gi|308242771|gb|EFO86723.1| CRE-DDX-23 protein [Caenorhabditis remanei]
          Length = 766

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 194/388 (50%), Gaps = 47/388 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLA 64
            P  + +A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    T L 
Sbjct: 333 FPSEVYQAVKEIGYMEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 392

Query: 65  ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E         +     IGG S   +   L+ 
Sbjct: 393 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLDIKTVSVIGGASREEQGMKLRM 452

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ +L+  P      
Sbjct: 453 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYLPASNMKK 512

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+SPAI  LA+ Y +    V+I S  +    
Sbjct: 513 DTDEFDNEEALMKGFQTRQKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGSAGKPTER 572

Query: 219 ID---------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL- 268
           ++         +   +V    +   +++IL     +  I+F + +    R   VLA+ L 
Sbjct: 573 VEQVCFFAYFIFIVYMVTSERKKKKLIDILMVETDRPIIIFVNQK----RGADVLAKGLV 628

Query: 269 -----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
                F+   L G   Q+ R  ALQ ++ G +++ +ATDVA RGID+ D+ LVI+ +++ 
Sbjct: 629 SVNPEFRASVLHGGKGQEAREYALQSLKSGESKILVATDVAGRGIDIKDVALVINYDMAK 688

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             E+  HR GRTGRAG+ G ++  + Q+
Sbjct: 689 TIEDYTHRIGRTGRAGKHGKAITFLTQD 716


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F + +  T+  +           AL
Sbjct: 48  GFEKPSAIQQRSIKPVIKGRDVIAQAQSGTGKTATFSIGVLQTIDTQ------MRETQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG ++  + R L  G HIV GTPGR+ D 
Sbjct: 102 ILSPTRELAGQIQKVILALGDYMNVQCHSCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 162 IKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCTQVVLISATLPHEILEMTS 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 222 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ + E  F V ++ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSGSSRVLITTDIWARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 NYDLPNNRELYIHRIGRSGRFGRKGVAI 369


>gi|260820614|ref|XP_002605629.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
 gi|229290964|gb|EEN61639.1| hypothetical protein BRAFLDRAFT_283402 [Branchiostoma floridae]
          Length = 591

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 197/356 (55%), Gaps = 20/356 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E G+ ++T VQ A +   +  KDV   A TGSGKT+AF + +   L    +     
Sbjct: 18  DTLKELGFQHMTPVQAACIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRRTETLRKH 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNGAHIVVG 130
               AL I PTRELA+Q+   +     +   +  + +  GG  V   ++  +NGA+I+V 
Sbjct: 78  EVG-ALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVADIKKYQENGANIIVC 136

Query: 131 TPGRLCDHIRGK--GLNIS-HLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           TPGRL D +R K  GLN++ HLK++   VLDEAD +LD+GF   I  IL   PK+RR  +
Sbjct: 137 TPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLLDMGFEMSINTILSYLPKQRRTGL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVN 237
           FSAT +  +  L +   ++ VR+ +  +N       R  + +D   ++    ++ N +V 
Sbjct: 197 FSATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLVA 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
            LR HG +  +VF ST A V  F+  L E L   +V+++ G++ +Q+R+      R   +
Sbjct: 257 FLRSHGNEKHMVFFSTCAGVDYFSSALRELLKNTRVMSIHGKM-KQKRNKIFAQFRQAES 315

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
            V + TDV ARG+D+P++  V+  +  SN    +HRSGRT R GR+G + VF++P+
Sbjct: 316 GVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPE 371


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 193/378 (51%), Gaps = 14/378 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++  P  I + +   G+   T +Q       L  +D++  A+TGSGKT  F   L
Sbjct: 121 LQTFESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGF--LL 178

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P S P  L +APTRELAVQ+  E +     +G+      GG     + 
Sbjct: 179 PGMLHIQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQL 238

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD+Q+G  IV+ TPGRL D +    + +  +  +VLDEAD MLD+GF   I+ I+ + P+
Sbjct: 239 RDIQHGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPR 298

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQ----HSDIDYRAVLVALSDRDN 233
           +R+ L FSAT    +  +A  +     V V I     +     S   +  VL +  ++  
Sbjct: 299 QRQTLFFSATWPREVKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFG 358

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +  I+R   A    I+FC+T+    + +  ++   F+  A+ G+  Q ER   LQ  +D
Sbjct: 359 ELSRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSRE-FRAAAIHGDKKQSERDYVLQAFKD 417

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR  + +ATDVAARG+D+P++  V++ +  +  E+ +HR GRTGRAG  G +   +    
Sbjct: 418 GRTPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGED 477

Query: 353 QRRAERL---FREANVSV 367
            + A  L    REA  +V
Sbjct: 478 AKHARDLIQVMREAQQTV 495


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 18/352 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +             EN R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLLGATG 437

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 438 RDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 497

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++  F   +NM 
Sbjct: 498 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/345 (34%), Positives = 183/345 (53%), Gaps = 8/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L   DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFDTCTPVQEKCIPEILEGHDVLGVAQTGTGKTAAYLLPVLSKL---DDGGYPK 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   + ++PTRELA Q+ + ++   Y   GV      GG   +R   E R L+ GA +V
Sbjct: 71  DAINCVIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELRSLRMGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   +LDEAD MLD+GF +DI+ I    PK  + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKLPKTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPEKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYETQKMTIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  ++  V +    L +      A+  +L Q ER + +   + G+  V +ATD+ ARGI
Sbjct: 250 VFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQYDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+E+VI+ ++  + E+ +HR GRT RA R G ++  + +  Q
Sbjct: 310 DIDDIEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQ 354


>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
 gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
          Length = 436

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 109/332 (32%), Positives = 174/332 (52%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E  Y   + +QE  +   +  +D+   A+TG+GKT AF L +   L   ++      
Sbjct: 15  AVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA+Q+    E +  +  +  AV  GGV    +   +  G  +++ TPG
Sbjct: 75  TIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++ H++ +VLDEAD MLD+GF  DI  IL   P++ + ++FSAT+   I
Sbjct: 135 RLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L  +   D +++ I+S N     I+     V   ++   ++ +L      NAIVF  T
Sbjct: 195 KHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    K L +       + G+ SQ  R  AL   ++ + RV +A+D+AARGID+ +L
Sbjct: 255 KRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDEL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             VI+ +L    EN +HR GRT RAG  G ++
Sbjct: 315 THVINFDLPDQAENYVHRIGRTARAGASGEAI 346


>gi|294140317|ref|YP_003556295.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 431

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 185/347 (53%), Gaps = 5/347 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ + L+   Y+N T VQ   +   L  +D+L  A TGSGKT AF L +   L   +
Sbjct: 21  IPELL-KRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSGKTAAFALPMLQKLAKSS 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV    +      K  + +    GGVS + +   ++ G
Sbjct: 80  AKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKPRLKIEAVFGGVSANTQMLAMRGG 139

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L   PK ++ L+
Sbjct: 140 ADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALLPKHKQTLL 199

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL        V + I SE  + S +  +   V  + +   + ++++ +  
Sbjct: 200 FSATFPEEVKTLTDKLLSSPVEIQIQSE--EQSTLKQQVYTVNRTRKTALLAHLIKENNW 257

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF S + + +R  + LA+          + SQ  R+  L+  ++G   V IATD+A
Sbjct: 258 RQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETHVLIATDIA 317

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +
Sbjct: 318 ARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHD 364


>gi|225020696|ref|ZP_03709888.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679783|ref|ZP_07402593.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946642|gb|EEG27851.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660403|gb|EFM49900.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 470

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 185/343 (53%), Gaps = 8/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+++G ++  ++QE  L   L  +D++  A+TG GKT  FG+ L   +    D   
Sbjct: 21  ITNALAQQGIIHTFAIQEQTLPIALDGRDIIGQARTGMGKTYGFGIPLLDRVFDAADIAE 80

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA+QV  +L      T + V    GG  +  +R  L +G  +VVG
Sbjct: 81  LDGTPRALVVTPTRELAIQVSTDLTKAAMFTPIRVTTVYGGRPIDEQRAVLDDGVDVVVG 140

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D H RG  L + H+  +VLDEADEMLDLGF  D+E +L +   + + ++FSAT+
Sbjct: 141 TPGRLLDLHKRGI-LRLDHVAILVLDEADEMLDLGFFPDVEKLLAALTHRHQTMLFSATM 199

Query: 190 SPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
              + TLA+ +      V+I +EN    + H+  +         D+      IL+ +   
Sbjct: 200 PGPVLTLAREFLHQP--VHIRAENVDAPQTHTTTNQVVFQSHHLDKKATCAKILQANNRG 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S +     LA+  F V A+ G+L Q  R  +L   R  R  + +ATDVAA
Sbjct: 258 KTIIFARTKRSAADLATDLAKRGFSVGAVHGDLGQAARETSLNAFRANRVDILVATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++
Sbjct: 318 RGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGHSGTAVTLV 360


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 197/392 (50%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++  P  I + +   G+ + T +Q       L  +D++  A+TGSGKT  F   L
Sbjct: 124 LQTFESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGF--LL 181

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R      P  L +APTRELAVQ+  E +     +G+      GG     + 
Sbjct: 182 PGMLHIQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQL 241

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +    + +  +  +VLDEAD MLD+GF   I+ I+ + P+
Sbjct: 242 RDLQYGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPR 301

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQ----HSDIDYRAVLVALSDRDN 233
           +R+ L FSAT    +  +A  +     V V I     +     S   Y +V+  + ++  
Sbjct: 302 QRQTLFFSATWPREVKHIASQFVVNQTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFA 361

Query: 234 AIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +  I+R        I+FC+T+    + +  +    F+  A+ G+  Q ER   LQ  +D
Sbjct: 362 ELAKIIRAKPPGTRIIIFCTTKRMCDQLSYQMGRE-FRSAAIHGDKKQSERDYVLQAFKD 420

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR  + +ATDVAARG+D+P++  V++ +  +  E+ +HR GRTGRAG  G S   + Q  
Sbjct: 421 GRTPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGESYTFMSQED 480

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRER 381
            + A  L    REA  ++    +P +E +  R
Sbjct: 481 AKHARDLMQVMREAGQTI----SPELEQLAMR 508


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 193/359 (53%), Gaps = 11/359 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +S+Q   ++  +  KDV+  AQ+G+GKT  F + L   + +++          AL
Sbjct: 42  GFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQ------AL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q    +  L     V    C GG ++ ++ + +     +V GTPGR+ D 
Sbjct: 96  VLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEML--DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           I+ + LN+ + K +VLDEADE+L   LGF+  I  I    P   ++++ SAT+S  I  +
Sbjct: 156 IKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEI 215

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
            K +  D V++ +  +      I    V V   + + + + ++         ++FC+TR 
Sbjct: 216 TKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRK 275

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   ++ L +  F V ++ G++ Q+ER   +   R G+ARV I+TDV ARGID+  + L
Sbjct: 276 KVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISL 335

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           VI+ ++  N EN +HR GR+GR GRKG+++  I +  + + + +  E++  +  +P P+
Sbjct: 336 VINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLKEI--ESHYRIKIKPTPA 392


>gi|71279863|ref|YP_269911.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
 gi|71145603|gb|AAZ26076.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
          Length = 448

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 190/341 (55%), Gaps = 5/341 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            +   G+   T +Q+  +   +   D++ S++TGSGKT+AF +  A   L++N   S   
Sbjct: 15  TIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIP-ALQRLSKNRALSKRD 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  + + PTRELA QV  +L    A T     + +GG + + + + LQ     +V TPG
Sbjct: 74  -PRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPEFIVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPA 192
           RL DH+     +++ L+ ++LDEAD MLDLGF  ++  I  ++  +KR+ L+FSAT+  A
Sbjct: 133 RLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLFSATLDHA 192

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVF 250
            +   A        R+ I + + +H DI  R  L   L+ ++  + + L    ++  I+F
Sbjct: 193 QVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEKSQQIIIF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR+   R  K+L E     VALSGEL+Q +R+  ++    G+ ++ + TD+A+RG+DL
Sbjct: 253 TATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDLASRGLDL 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++  N
Sbjct: 313 INVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPN 353


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 202/383 (52%), Gaps = 29/383 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   ++A   
Sbjct: 178 PAVM-ENVTHSGYTKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHIMAGGP 236

Query: 68  RF--SPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               +PA         P AL ++PTRELA+Q+ +E      KT +  A+  GG   +R++
Sbjct: 237 EMIKTPAFTNGRRTYFPSALVLSPTRELAIQIHKEASKFSYKTNLQTAILYGGRENYRDQ 296

Query: 119 RD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
            + L++GAHI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I  I+    
Sbjct: 297 VNRLRSGAHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGM 356

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLVAL 228
           P K  R   MFSAT    I  LAK++ K+        RV   SEN     I+ R + V  
Sbjct: 357 PAKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSEN-----IEQRLLWVNE 411

Query: 229 SDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            ++   ++ IL    + N  +VF  T+   +     L     + V++ G+L Q ER   L
Sbjct: 412 MEKRQNLMEILMNEDSTNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 471

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-F 346
           +M R G+  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++  F
Sbjct: 472 EMFRSGQFPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSF 531

Query: 347 VIPQN--MQRRAERLFREANVSV 367
              +N  + R  + L  EAN  V
Sbjct: 532 FNDKNRGIGRDLKNLILEANQEV 554


>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
 gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
          Length = 551

 Score =  186 bits (472), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 197/357 (55%), Gaps = 7/357 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FEN+   + +A+S++     T +Q+  +   L  +D++  A+TGSGKT  F +  +   +
Sbjct: 115 FENL---LLQAISKQNIDTPTPIQKQAIPIALSGRDLIAIAKTGSGKTATF-IWPSIPHI 170

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P+AL +APTRELA Q+  E         +   V  GGVS  ++ ++L+ 
Sbjct: 171 MDQPYLEKGDGPIALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQCKELKA 230

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D I+ K   ++ +  +VLDEAD+M D GF   +  I++     R+ L
Sbjct: 231 GCEIVVSTPGRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTL 290

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIV-NILRY 241
           +FSAT    +   A++   D ++++I      +SDI     VL + S++ + ++ N+   
Sbjct: 291 LFSATFKQNVEDFARSILTDPIKISIGQAGSANSDITQIVQVLKSESEKWSWLIDNLPNL 350

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F S +ASV   +K L    F+  ++ G+ +Q ERS  +Q  ++G+  + IAT
Sbjct: 351 LNQGSVLIFVSMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEGKVNILIAT 410

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQRRAE 357
           DVAARG+D+P ++ VI+ + S + E+  HR GRTGRAG KG     + P+++   A+
Sbjct: 411 DVAARGLDIPLIKNVINFDPSRDIESHTHRIGRTGRAGAKGDAYTLITPKDVNFAAD 467


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 181/336 (53%), Gaps = 15/336 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 21  YQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQRGPAVSSNRARV-LV 79

Query: 80  IAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + PTRELA QV       GR L+  +           GGVS++ +   L+ G  ++V TP
Sbjct: 80  LVPTRELAEQVLQSFIAYGRGLDLRFL-------AAYGGVSINPQMMKLRKGVDVLVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  
Sbjct: 133 GRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFTDD 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +A N  +  V ++++  N   S I    V V   ++ +  ++++  +G ++A+VF  
Sbjct: 193 IRAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENGWQHALVFVK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ D
Sbjct: 253 TRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAARGLDIDD 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 313 LPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|326318063|ref|YP_004235735.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374899|gb|ADX47168.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 615

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 195/387 (50%), Gaps = 51/387 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL-------REKDVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   T VQE  +   +       +  D++VS+QTGSGKT AF L +  
Sbjct: 61  PELV-QAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAFLLPVLH 119

Query: 61  TLLA------------------------------------ENDRFSPASAPLALAIAPTR 84
           TL+                                      N R   A+ P AL + PTR
Sbjct: 120 TLIGQQAAAQATARAEYEAAAAEALARGETAPKRAKRKDPTNPRHFKAATPGALILCPTR 179

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ VA  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 180 ELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQ 238

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I + + ++++ +MFSAT +P I  LA     D
Sbjct: 239 IKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAMRVMHD 298

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
                 +V I S   +H++I         +     +++  LR      AIVF ST+    
Sbjct: 299 GGASVKKVQIDSPQEKHANIKQTLFWADNAQHKRKLLDHWLRDTTINQAIVFASTQVECD 358

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 359 GLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 418

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G++V
Sbjct: 419 FGLPMKAEDYTHRIGRTGRAGRDGLAV 445


>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
 gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 181/349 (51%), Gaps = 7/349 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I + L + G    T VQE  +      +DV+  +QTG+GKT+AF   L  TL   
Sbjct: 7   NIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAF---LIPTLEKI 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N      SA   L + PTRELA+Q+  E E L    G+ +    GG  +  +   L+   
Sbjct: 64  NKNKKDVSA---LILTPTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKLKGNI 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+ TPGRL DH+  K +++ +L   +LDEAD+ML +GF+++I+ IL  + KKR+ L F
Sbjct: 121 HLVIATPGRLLDHLDRKTISLKNLDIFILDEADQMLLMGFKNEIDAILKETNKKRQSLFF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  LA  Y  D   + I S+      I+   V      + +++  +L      
Sbjct: 181 SATMDSQVKKLAYRYTNDPAFIEIKSQEVTLEKINQSIVKTTDRRKFDSLCKVLDGDNPF 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T+    +  + +    +    +  ++SQ +R   ++  R+ + +  IATDVA+
Sbjct: 241 MAIIFCRTKRRADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQYLIATDVAS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ 353
           RG+D+  +  + + +     E+ +HR GRTGRAG  G    FV  +N +
Sbjct: 301 RGLDITGVTHIYNYDFPETAEDYIHRIGRTGRAGENGDTCAFVTDKNTK 349


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 179/329 (54%), Gaps = 1/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 21  YQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGRL D  
Sbjct: 80  LVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLN 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT S  I T+A  
Sbjct: 140 RQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDEIRTMAAG 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             ++ V +++++ N   S I    V V   ++    ++++  +  ++A+VF  TR  V  
Sbjct: 200 ILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMHLVAQNKWEHALVFVKTRNGVDY 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
              +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL LVI+ 
Sbjct: 260 LAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAARGLDIDDLPLVINV 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 320 DLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi]
 gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 180/339 (53%), Gaps = 9/339 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+ F L L  T L    R        PL L I 
Sbjct: 208 TQIQMQGLPSILIGRDIIGIAFTGSGKTIVFVLPLIMTCLEAELRCPIEEGEGPLGLIIC 267

Query: 82  PTRELAVQ----VGRELEWLYAKT-GVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRL 135
           P+RELA Q    +    E+L+     ++ ++C IGGVS + + ++++ G H++V TPGRL
Sbjct: 268 PSRELASQTHNIINYFCEYLHKDNFPMLKSLCVIGGVSTYEQGKEIKKGVHMLVATPGRL 327

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K + +   + +  DEAD ++DLGF ++I   LD+   +R+ L+FSAT+   I  
Sbjct: 328 NDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEIRNTLDNFSNQRQTLLFSATMPKKIQE 387

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            AK+   + + +N+      + D+      V    + + ++ +L+  G    ++FC  + 
Sbjct: 388 FAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLQVLQKTGPP-VLIFCENKK 446

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L       +A+ G L Q ER  A+ + R+G   V + TDVA++G+D P +E 
Sbjct: 447 DVDDVHEYLLLKGVNAIAIHGSLGQTERLEAINLFRNGEKDVLVGTDVASKGLDFPSIEH 506

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           VI+ ++  + EN +HR GRTGR G+ G++   I +N + 
Sbjct: 507 VINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEE 545


>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
 gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
          Length = 525

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 201/411 (48%), Gaps = 37/411 (9%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F +IPQ+   I + L  +G   +T +Q     P     D++  ++TGSGKT+AF L L  
Sbjct: 1   FSSIPQINQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVE 60

Query: 61  TL-----------------------LAENDRFSPASA----PLALAIAPTRELAVQVGRE 93
            L                       L+E  +     +    P  L + PTREL+ QV   
Sbjct: 61  KLYKNMESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETT 120

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            + +       +    GG S   +   L+ G  I+ GTPGR+ DHI  K L++ ++K VV
Sbjct: 121 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVV 180

Query: 154 LDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           LDEADEML+LGF  DIE IL   + K  ++L++SAT    I  ++  Y K+ + +++ + 
Sbjct: 181 LDEADEMLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINT 240

Query: 213 -NRQHSDIDYRAVLVALSDRDNAI----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
            N+    I + A+      ++ A+    + +++ +G +  I+F  T+          + +
Sbjct: 241 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQ-VIIFTRTKLEADILCSEGSFN 299

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
                 L G ++Q  R + +Q  R G  +V IATD+AARG+D+ +++LVI     + P  
Sbjct: 300 YLTFSVLHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAI 359

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            +HRSGRTGRA +KGMS+ +     +    ++ +   +    E  P+ E +
Sbjct: 360 YIHRSGRTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNEQV 410


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +       +      AL
Sbjct: 50  GFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIV------NTAVREVQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H+V GTPGR+CD 
Sbjct: 104 ILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 164 IKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 224 KFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 281

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 282 KVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSL 341

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GK+    L +   +       +      AL
Sbjct: 53  GFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKSSMISLTVCQIV------DTAVREVQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     + V  CIGG S+  + R L+NG H+V GTPGR+CD 
Sbjct: 107 ILSPTRELASQTEKVMLAVGDYLNIQVHACIGGKSISEDIRRLENGVHVVSGTPGRVCDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDEADEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 167 IKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  + VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 227 KFMTEPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 284

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ QQER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 285 KVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFRSGATRVLITTDVWARGLDVQQVSL 344

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 345 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 184/351 (52%), Gaps = 14/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+PQ + + +    +   T VQ+  +   L  +D++  AQTGSGKT AF   + +++L +
Sbjct: 161 NLPQCMMDNIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIASMLLK 220

Query: 66  NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + PA+        P AL +APTREL  Q+  E       TG+   V  GG     + 
Sbjct: 221 G--YQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPAPNQL 278

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DS 175
           RDL+ G  I+V TPGRL D I    + +S +  + LDEAD MLD+GF   I  I+   D 
Sbjct: 279 RDLERGCDILVATPGRLSDFIERGRVGLSSILFLCLDEADRMLDMGFEPQIRRIVEQEDM 338

Query: 176 SP-KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P  +R+ LMFSAT    I  LA ++  + V + +         I      V+  ++ N 
Sbjct: 339 PPVGQRQTLMFSATFPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEYVSSDEKQNT 398

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++++        +VF  T+       ++L  +     ++ G+ SQ++R  AL+  + G+
Sbjct: 399 LLDLISTVEGLT-LVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRSFKSGK 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V +ATDVAARG+D+P +  VI+ +L  + ++ +HR GRTGRAG KG++ 
Sbjct: 458 TPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLAT 508


>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
 gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
          Length = 432

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 185/349 (53%), Gaps = 9/349 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +  
Sbjct: 15  QALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPVLQRV------HTDV 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L IAPTREL  Q+  E + + +   V +   IGG ++  + + L     +++GTP
Sbjct: 69  HQEQVLIIAPTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRRPQVILGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   
Sbjct: 129 GRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLLFSATIPDK 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK Y    V V    ++     ID R  ++   ++   ++ ++       AIVFC+
Sbjct: 189 IRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCN 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  
Sbjct: 249 KREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
           +  V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 309 ITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIER 357


>gi|194761004|ref|XP_001962722.1| GF15595 [Drosophila ananassae]
 gi|190616419|gb|EDV31943.1| GF15595 [Drosophila ananassae]
          Length = 389

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 35  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 89  ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 149 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 209 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 269 DQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 329 NYDLPSNRENYIH 341


>gi|138896049|ref|YP_001126502.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267562|gb|ABO67757.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 436

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 190/351 (54%), Gaps = 17/351 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P VI EA+    +   T +QE I+   LR + ++  +QTG+GKT A+       LL
Sbjct: 9   FPFQPFVI-EAIQALRFYKPTEIQERIIPRALRGESMVGQSQTGTGKTHAY-------LL 60

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRER 118
              ++  P  A + A+  APTRELA Q+  E   +     K  ++VA C IGG    +  
Sbjct: 61  PIIEKIDPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKAL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L    HIV+GTPGR+ D IR + L++   + +V+DEAD MLD+GF  D++ I    PK
Sbjct: 121 EKLHVQPHIVIGTPGRINDFIREQALDVHTARTLVVDEADLMLDMGFITDVDQIAARMPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IV 236
           + +ML+FSATI   +    K Y ++   + +  +   + +I++  VL+ L  R+    + 
Sbjct: 181 ELQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEH--VLIPLRGREKVKLLY 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +    AIVF +TR         LAE   +V  L G+L+ +ER   +  +RD   +
Sbjct: 239 DVLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATI 349


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 194/381 (50%), Gaps = 17/381 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E +S   Y   T VQ+  +   L+  D++  AQTGSGKT A+ +   + +L  N +R 
Sbjct: 136 LAENVSRCRYQKPTPVQKYGIPCVLKGSDLMACAQTGSGKTAAYLIPAINFMLVNNLNRA 195

Query: 70  SPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P    SAP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L  G  
Sbjct: 196 KPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCG 255

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PKKR 180
           ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         P +R
Sbjct: 256 LLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGER 315

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L++SAT    I  +A+ +      + +        +I      V   D+   ++ +L+
Sbjct: 316 QTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLK 375

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  RV +A
Sbjct: 376 EHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLVA 435

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--- 357
           TDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++    +  +   +   
Sbjct: 436 TDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNEKNRNVVDDLI 495

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            L RE N +V+    P V+A+
Sbjct: 496 PLLRETNQTVL----PEVQAL 512


>gi|127512812|ref|YP_001094009.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638107|gb|ABO23750.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 488

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 184/346 (53%), Gaps = 4/346 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +P  +   L + GY   T +Q+  +   L+ K+++ +AQTGSGKT  F L + +TL+  +
Sbjct: 8   LPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPMLTTLMQGQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A A   + +APTREL +QV   +       G+V     GGV V  +++ L  G 
Sbjct: 68  TQRKKRARA---IILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQLIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + +    ++ +VLDEAD MLD+GF +DI  ILD+ P++R+ L+F
Sbjct: 125 DIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQNLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK     A+ +++        DI+     V    +   +  +++ +   
Sbjct: 185 SATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIKDNAWP 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +   Q   +    +Q  R   L   + G+    I+T ++A
Sbjct: 245 QALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLISTGISA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RGID+ +L LVI+ +L    +  +HR GRTGRAG KG ++ ++ ++
Sbjct: 305 RGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKD 350


>gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
 gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
          Length = 422

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 177/333 (53%), Gaps = 4/333 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +    
Sbjct: 2   KALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK---- 57

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ TP
Sbjct: 58  KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIATP 117

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+   
Sbjct: 118 GRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMPSE 177

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA +   +  ++ +   +     I      V   ++ + ++++L+    ++ ++F  
Sbjct: 178 IEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVLIFTR 237

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  ++L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+  
Sbjct: 238 TKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDVNQ 297

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ EL +  E  +HR GRTGRAG  G+++
Sbjct: 298 LSHVINYELPNISETYVHRIGRTGRAGHDGIAI 330


>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
 gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
          Length = 444

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 127/364 (34%), Positives = 183/364 (50%), Gaps = 7/364 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  + +  S
Sbjct: 15  ALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLTLEGPKVAANS 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA QV   +        +      GGVS++ +   L+ G  I+V TPG
Sbjct: 75  A-RALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDILVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L ++ L+ +VLDEAD MLDLGF +++  I    PKKR+ L+FSAT S  I
Sbjct: 134 RLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLFSATFSDDI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     D + + ++  N   + +    V V    +    V+++R    K  +VF  T
Sbjct: 194 RLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKAELFVHLMRKGRWKQVLVFAKT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L         + G+  Q  R  AL   +    ++ +ATDVAARG+D+ DL
Sbjct: 254 RNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIEDL 313

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA---NVSV 367
            LV++ +L    E+ +HR GRTGRAG  G ++ ++     NM    E L R+    N+  
Sbjct: 314 PLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEMLTRQTLTRNMEQ 373

Query: 368 VWEP 371
            +EP
Sbjct: 374 DFEP 377


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 655


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 213 VKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 272

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 273 IVHIM-DQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQF 331

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 332 KELKSGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 391

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 392 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIK-QVVNVLPSDAEKMPWLL 450

Query: 239 LRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF + +A V      L +H F+V AL G+  Q  R   LQ  + G  
Sbjct: 451 EKMPGMIDDGDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIY 510

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R
Sbjct: 511 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESR 570

Query: 355 RAERL 359
            A  L
Sbjct: 571 FAGEL 575


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 176/362 (48%), Gaps = 27/362 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-- 71
           A+   GY   T VQ   +   L  +D+L +AQTG+GKT AF L   + L    +  +P  
Sbjct: 60  AIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNNL----EHIAPPK 115

Query: 72  --------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
                                  P+ L I PTRELA Q+      +   TG V    +GG
Sbjct: 116 PVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGHVAVTVVGG 175

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           VS   +   L+ G  I+V TPGRL D I     ++  +K +VLDEAD MLD+GF   +  
Sbjct: 176 VSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPAVRR 235

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+  +P +R+ L+FSAT+         +   D  RV IA        +D     V++  +
Sbjct: 236 IVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPVSIEAK 295

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +N +   L+  G +  IVF  T+       + L     +  A+ G  SQ +R  AL   R
Sbjct: 296 NNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALSAFR 355

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           DG   V +ATDV ARGID+ D+  V++ ++ + P + +HR GRTGRAG  G ++ FV  Q
Sbjct: 356 DGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGELGWAITFVTEQ 415

Query: 351 NM 352
           ++
Sbjct: 416 DV 417


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 186/341 (54%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   TS+Q+  +   L+ +D+L SA TG+GKT AF L  A   L +  R  P 
Sbjct: 14  DAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAF-LIPAIQYLLDFPRREPG 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + L + PTRELA Q+  + E L  +T + + V  GG++    +   +    +++ TP
Sbjct: 73  FARV-LIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKEIFEKNNDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +R+  +FSAT+   
Sbjct: 132 GRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNRRQCFLFSATLEGD 191

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYHGAKNA 247
           ++   A+    D   +   S  ++ + I      V L+D    +   +VN L       A
Sbjct: 192 SVERFAETTLNDPALLEAESSRKEKAKIHQ---WVHLADDYHHKLELLVNTLNGPDVSKA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  +      L  +  +   L GE+ Q +R  A++    GR ++ IATDVAARG
Sbjct: 249 IVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKILIATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ ++
Sbjct: 309 IDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLV 349


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 180/338 (53%), Gaps = 5/338 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ I + + E+ Y+  T +Q       L+ KDV+  A+TGSGKT++F L  A   + +
Sbjct: 159 NFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISF-LIPAIIHILD 217

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTREL  Q+  E       T +    C GGV    + +D Q+G 
Sbjct: 218 TPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTAIKTVRCFGGVPQSSQMKDFQSGC 277

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I V TPGRL D I+    ++S    ++LDEAD ML++GF   ++ I+      R+ +M+
Sbjct: 278 DICVATPGRLIDFIKRGVTSLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDRQTVMW 337

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243
           +AT   AI   A  +    +++NI + +  H++   + ++      DRD+ +  I++  G
Sbjct: 338 TATWPQAIQQFALGFMFHPLQINIGNPDL-HANESVKQIIEVCQERDRDSKMNEIVKRIG 396

Query: 244 A-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           + K  ++F  T+ S       L +  ++V  + G+  Q ER  AL   + G     IATD
Sbjct: 397 SEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKSGAVNYLIATD 456

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           VA+RG+D+ ++E+VI+ E+ S+ EN +HR GRTGR GR
Sbjct: 457 VASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGR 494


>gi|297204692|ref|ZP_06922089.1| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148758|gb|EDY54797.2| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 486

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL+ +G      +Q A L   L  +D L   +TGSGKT+AFGLAL +    +
Sbjct: 64  DMPEPLLAALTAQGVSVPFPIQSATLPNTLAGRDALGRGRTGSGKTLAFGLALLARTAGQ 123

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 124 --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVQLRLATVVGGMSIGRQANALRSGA 180

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 181 EVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 239

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       S +++  + V  +D+      I    G 
Sbjct: 240 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVSTMEHHVLHVHGADKHWTTTQIAAREG- 298

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 299 -RVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVATNVA 357

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 358 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTRLMTAAG 417

Query: 365 V 365
           +
Sbjct: 418 I 418


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/399 (32%), Positives = 210/399 (52%), Gaps = 18/399 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K  + VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKK--LSVACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDN 233
               + L+FSAT    +  +AK Y K    +V++  +  Q + I  ++ A+    ++R  
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 234 AIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            I +++R Y G +   I+FC T+      ++          +L G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ-DAQSLHGDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRIL 387
            + +  ++ ++A +       PS   I     +DA R+L
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL 655


>gi|320535422|ref|ZP_08035531.1| ATP-dependent RNA helicase DbpA family protein [Treponema
           phagedenis F0421]
 gi|320147709|gb|EFW39216.1| ATP-dependent RNA helicase DbpA family protein [Treponema
           phagedenis F0421]
          Length = 322

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 178/324 (54%), Gaps = 7/324 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + + +++ GY   T VQ+ +L       D+ V +QTG+GKT A+ + + 
Sbjct: 1   MKFTELNLDLSLQQGINDAGYEECTPVQKEVLEKAFSNADLYVQSQTGTGKTAAYLIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L+E      A    AL + PTRELAVQ+  E   L   TG+  A   GGV   ++ +
Sbjct: 61  QRMLSE----PAAQKKTALIMVPTRELAVQIEEECAKLAKHTGITAASFYGGVGYEKQTK 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L+ GA I++GTPGR+ D  +   + +  +  +V+DEAD M D+GF  D+  +L   PK 
Sbjct: 117 SLKEGAQILIGTPGRVIDLQKSGTMKLDTVGFLVVDEADRMFDMGFYPDLRTLLQVLPKA 176

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ ++FSAT++  +  LA  Y ++A  ++I S+     +ID +   V+   +   ++ 
Sbjct: 177 EKRQTMLFSATLNTWVKNLAWEYTENAQEISIDSDVITVEEIDQKVFHVSSDAKMQLLLG 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +N I+FC+T+ SV    K L  +      L+G+L Q  R   +   + G+   
Sbjct: 237 ILAREKPENLIIFCNTKKSVEIVAKRLGVNNHICEFLNGDLPQHTRQAIINKFKTGKINC 296

Query: 298 CIATDVAARGIDLPDLELVIHAEL 321
            +ATDVAARGID+ +LE+VI+ +L
Sbjct: 297 VVATDVAARGIDINNLEMVINYDL 320


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 18/352 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-----------ENDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +             EN R
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGR 257

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H+
Sbjct: 258 YGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHL 317

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  +
Sbjct: 318 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTM 377

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 378 MFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLLGATG 437

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ + +AT 
Sbjct: 438 RDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 497

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++  F   +NM 
Sbjct: 498 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMN 549


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 164 FPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 222

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 223 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 282

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 283 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 342

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D +  ++ +++    
Sbjct: 343 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDENEKLMKLIKLLTD 398

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 399 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 458

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 459 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 518

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 519 LIQVLREANQTI 530


>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
 gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
          Length = 432

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 184/348 (52%), Gaps = 9/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +   +       +   
Sbjct: 16  ALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPILQRV------HTDVH 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L IAPTREL  Q+  E + L +   V +   IGG ++  + + L     +++GTPG
Sbjct: 70  QEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQLQQLGRRPQVILGTPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +   R++L+FSATI   I
Sbjct: 130 RLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDANRQLLLFSATIPDKI 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK Y    + V    ++     ID R  ++   ++   ++ ++       AIVFC+ 
Sbjct: 190 RNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKMIEDDNPFLAIVFCNK 249

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R    R +  L      +  + G+L+Q  R+  L+     + ++ +ATD+AARGID+  +
Sbjct: 250 REGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGI 309

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAER 358
             V + ++  + +  +HR GRTGRAG  G++V F  PQ+    RR ER
Sbjct: 310 THVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRRIER 357


>gi|74693203|sp|Q755N4|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 557

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 203/394 (51%), Gaps = 25/394 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + + E G+   T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 121 FPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQP 180

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+ +E    + ++  +   C+ GGV   ++ RDLQ G 
Sbjct: 181 -LLSPGDGPVVLVLAPTRELAVQIQKECS-KFGRSSRIRNTCVYGGVPKSQQIRDLQRGV 238

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 239 EILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA++Y  D ++VNI S E      I     +V+  D+ + +V  L   G+
Sbjct: 299 SATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLGEVVSDFDKRDRLVKHLEI-GS 357

Query: 245 KNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           K+     I+  ST+ +    T  L +  +  +A+ G    Q+    L   R GR+ + +A
Sbjct: 358 KDKDSKIIILHSTKRTCDEITSYLRQDGWPALAIHGPTPLQDIDCTLNDYRTGRSPIMVA 417

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++              F
Sbjct: 418 TDVVARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAI------------SFF 465

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            EAN ++    A  +  +RE   Q I QD L  D
Sbjct: 466 TEANKTL---GAQLISIMREA-KQEIPQDLLVYD 495


>gi|323357554|ref|YP_004223950.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273925|dbj|BAJ74070.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 515

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 132/391 (33%), Positives = 194/391 (49%), Gaps = 8/391 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF L L + L A 
Sbjct: 10  GVPAPLIDVLAAQGKNEPFPIQADTLPDTLAGRDVLGRGKTGSGKTLAFSLPLVARLAAN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR      P AL +APTRELA Q+   ++ L    G+V     GGV+  R+   L  G 
Sbjct: 70  TDRRR-GRKPRALVLAPTRELANQIDEVIKPLAQPFGLVTTTVYGGVNQKRQVDALNAGV 128

Query: 126 HIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I+V  PGRL D I G+G  N+  ++  VLDEAD M DLGF   +  +L  +P   + L+
Sbjct: 129 DILVACPGRLEDLI-GQGFANLGDIEITVLDEADHMADLGFLPGVTRLLARTPADGQRLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L K + ++ V  ++   +   + + +     A +D    +V  L   G 
Sbjct: 188 FSATLDNGVDKLVKRFLRNEVLHSVDEAHSHVAAMTHHVFAPADADAKKDLVQTL-ASGT 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+    +  K L       V L G LSQ  R   L    DGRA+V +ATDVA
Sbjct: 247 ARRILFMRTKHQAKKLAKQLTASGIPAVDLHGNLSQPARDRNLAAFGDGRAKVLVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +  +ELV+H +     +  LHRSGRT RAG  G  V ++    +R    + R+A 
Sbjct: 307 ARGVHVDGVELVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTIMLPEQRRDTLDILRKAK 366

Query: 365 VSVVWEP----APSVEAIRERDAQRILQDPL 391
           +S    P    +P V A+    A  +  +P+
Sbjct: 367 ISATPTPVTSTSPEVVALVGEVAPYVKPEPI 397


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L+ +G++  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++++ +
Sbjct: 74  --TPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVI 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           + G  I++GT GR+ D  +   ++   ++AVVLDEAD M DLGF  DI FI     +P +
Sbjct: 132 EQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAPTE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  + ++   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSI 357


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 172/329 (52%), Gaps = 1/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  + +  S   AL 
Sbjct: 21  YRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQRLTMEGAKVASNSV-RALV 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV            +      GGVS++ +   L+ G  ++V TPGRL D  
Sbjct: 80  LVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVLVATPGRLLDLY 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   +  + L+A+VLDEAD MLDLGF ++++ +  + PKKR+ L+FSAT S  I  +A+ 
Sbjct: 140 RQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPKKRQTLLFSATFSEPIRQMARE 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             +D + V ++  N     +    V V    +    +++L        +VF  TR  V +
Sbjct: 200 LLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLAERRWGQVLVFVKTRKGVDQ 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L        A+ G+  Q  R  AL+  + G  +V +ATDVAARG+D+ DL  V++ 
Sbjct: 260 LVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQVLVATDVAARGLDIHDLPQVVNF 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 320 DLPIVAEDYVHRIGRTGRAGASGEAISLV 348


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/366 (34%), Positives = 192/366 (52%), Gaps = 9/366 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 73  DMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 130 AGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATALRRGA 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 190 EVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVRPGGQRML- 248

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 249 FSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAIATEIAARDG- 307

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT+VA
Sbjct: 308 -RVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVATNVA 366

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL   A 
Sbjct: 367 ARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGRVATLVTPNQRRSMARLM--AA 424

Query: 365 VSVVWE 370
           V VV +
Sbjct: 425 VGVVPQ 430


>gi|213585104|ref|ZP_03366930.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 327

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 170/326 (52%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+          
Sbjct: 2   AIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGRR 61

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TPG
Sbjct: 62  PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPG 121

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 122 RLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDI 181

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  T
Sbjct: 182 KALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRT 241

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +L
Sbjct: 242 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEEL 301

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAG 339
             V++ EL + PE+ +HR GRTGRA 
Sbjct: 302 PHVVNYELPNVPEDYVHRIGRTGRAA 327


>gi|190149870|ref|YP_001968395.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307249764|ref|ZP_07531742.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307263195|ref|ZP_07544815.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915001|gb|ACE61253.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306858179|gb|EFM90257.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306871412|gb|EFN03136.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 406

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  ND  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHYLLT-NDSETNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 RVRELAYEDMDNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 354


>gi|156043047|ref|XP_001588080.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980]
 gi|154694914|gb|EDN94652.1| hypothetical protein SS1G_10526 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 192/341 (56%), Gaps = 17/341 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLALAIA 81
           T +Q A     L  +DV+  A+TGSGKT+AF +     +  L +N +      P A+ ++
Sbjct: 203 TPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQK---NKGPRAVVVS 259

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA+Q   ++  L   +G+      GGV    + R L+  A IVV TPGRL D I  
Sbjct: 260 PTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKT-ADIVVATPGRLNDLINQ 318

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKN 199
              ++S  + VVLDEAD MLD GF ++I  I++++P   KR+ LMF+AT   ++  LA  
Sbjct: 319 GCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELAST 378

Query: 200 YQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-----IVF 250
           +    V++    N   + R +S I  +  +V   D++  ++ +L+ + + +      +VF
Sbjct: 379 FMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVF 438

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +   +R    + +  F+V  + G+LSQ++R+ +L+  + G   V +ATDVAARG+D+
Sbjct: 439 CLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDI 498

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           P ++LVI+       E+ +HR GRTGRAG+ G+++ +  ++
Sbjct: 499 PAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEH 539


>gi|310643767|ref|YP_003948525.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309248717|gb|ADO58284.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 463

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 196/361 (54%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + + L+E      + VQ   +   ++ K VL  +QTG+GKT+A+ L L   +  + 
Sbjct: 10  VEQDLLDKLTEHEITQPSPVQAEAIPEIMKGKHVLARSQTGTGKTLAYLLPLLQAIDPQK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A   L +AP++ELA+Q+ RE +      G+ V   IGG ++ R+   L++   
Sbjct: 70  ------KATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLKDHPQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ + I  K L + ++  +V+DE D+M  LG   D+  IL S+ + R+++  S
Sbjct: 124 LVVGTPGRVRELIASKKLKMHNITTIVIDEVDQMFQLGGAGDVTHILGSAQRDRQLVFLS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  I +LA+    D V + I  + +  S +++   +    D+ + +  ++R+   + 
Sbjct: 184 ATLNNEIQSLAQREMPDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRRLVRHFNPRK 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF +T  ++      L        +L G+  +  RSN L   R+ + +V +A+DVAAR
Sbjct: 244 ALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKVLVASDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  LE+VIH + +++ +  +HR+GRTGR GRKG+ V V+ +       +  RE  + 
Sbjct: 304 GLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVVSVVTERETFIMRKFSRELGID 363

Query: 367 V 367
           +
Sbjct: 364 I 364


>gi|254449290|ref|ZP_05062736.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
 gi|198261099|gb|EDY85398.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
          Length = 433

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 191/341 (56%), Gaps = 13/341 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++   G+   T +Q   L   L+ +D+   AQTG+GK+ AF +A    LL +     PA
Sbjct: 22  DSIQATGFEYCTPIQAQTLPLVLKGQDIAGQAQTGTGKSAAFLIATFERLLRQ-----PA 76

Query: 73  SAPL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            A        AL +APTRELA+Q+ ++ E L   T + +A+  GG +  ++R+ ++ GA 
Sbjct: 77  PAERKPQQVRALILAPTRELAIQIHKDAEQLGQATDLKLALAYGGANYEQQRKTIEAGAD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184
           +++GTPGR+ D+ + K  ++ + + VVLDEAD M DLGF  D+ +++     PK+R  L+
Sbjct: 137 VLIGTPGRIIDYWKQKVFDLKYCQVVVLDEADRMFDLGFISDVRYLMRRCPEPKQRLSLL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  +  ++ +A+E      ++      A  ++   ++ + +++  
Sbjct: 197 FSATLSLRVQELAYEHMDNPTKIEVAAEQVTADRVEQYLYHPANDEKIPLLLGLFKHYQP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + +I+F +T+ +       L  +  +   LSG++ Q++R+  ++  + G     +ATDVA
Sbjct: 257 QRSIIFVNTKRNADTVWGYLKGNGIEAALLSGDVPQKKRTRMVEQFKAGELTALVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +RG+ +P +  V + +L  + E+ +HR GRT RAG  G ++
Sbjct: 317 SRGLHVPGVSHVFNYDLPQSAEDYVHRIGRTARAGESGYAL 357


>gi|171059675|ref|YP_001792024.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170777120|gb|ACB35259.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 477

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 197/368 (53%), Gaps = 12/368 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L + GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 27  LPPATLANLQQLGYTAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALALLANLNPR- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            RF+  S    L + PTRELA QV +E+  L  A+  + V   +GG ++  +   L++GA
Sbjct: 86  -RFAVQS----LVLCPTRELAEQVTQEVRRLARAEDHIKVLTLVGGTTMRPQLASLEHGA 140

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ DH+    L++S L  +VLDEAD MLD+GF DDI+ ++   PK+R+ L+F
Sbjct: 141 HIVIGTPGRIMDHLERGSLDLSALNTLVLDEADRMLDMGFFDDIKTVIQQCPKERQTLLF 200

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHG 243
           SAT    I  ++  + +    + +     +H+    R +   +   +R +A+  +L ++ 
Sbjct: 201 SATYPEGIARISAAFMRAPKEIKL---TEKHAAGKIRQIFYEVREDERLHAVSLLLDHYR 257

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + + FC+T+       +VL    +  + L G+L Q++R   L    +    V +ATD+
Sbjct: 258 PVSTLAFCNTKQQCRDLVQVLRAQGYSALELHGDLEQRDRDQVLIQFANQSCSVLVATDI 317

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  VI+ E++ +     HR GRTGRA  +G +  +   +   R  ++    
Sbjct: 318 AARGLDISQLGAVINVEITPDIATHTHRIGRTGRADEEGWAFSLASMDEMGRVGQIEVMH 377

Query: 364 NVSVVWEP 371
             +  W+P
Sbjct: 378 GFTAQWQP 385


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI + L+ +G++  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVI-DGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++++ +
Sbjct: 74  --TPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVI 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           + G  I++GT GR+ D  +   ++   ++AVVLDEAD M DLGF  DI FI     +P +
Sbjct: 132 EQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAPTE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  + ++   V +  E +    I       +   +   +  ++
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSI 357


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +       +      AL
Sbjct: 50  GFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIV------DTAVREVQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H+V GTPGR+CD 
Sbjct: 104 ILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 164 IKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 224 KFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 281

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 282 KVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSL 341

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|302562189|ref|ZP_07314531.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302479807|gb|EFL42900.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   LS  G      +Q A L   L  +DVL   +TGSGKT+AFGL L   L    
Sbjct: 15  LPAEVLRTLSALGVREPFPIQAATLPDSLEGRDVLGRGRTGSGKTLAFGLPL---LTRTA 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QV ++L        + +   +GG+S+ R+   L+ GA 
Sbjct: 72  GRRAAPKQPLALVLVPTRELAQQVTQDLAPYAEALRLRMTTVVGGLSIGRQTAALRQGAE 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMF 185
           +VV TPGRL D I      +  ++  VLDEAD+M D+GF   +   LD   P  +RML F
Sbjct: 132 VVVATPGRLHDLIERNACRLGSVRITVLDEADQMCDMGFLPQVTDALDQVHPDGQRML-F 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V  ++       + +++  ++V   DR   +  I    G  
Sbjct: 191 SATLDRDVDKLVGRYLHDPVVHSVDPPAGAVTTMEHHVLVVHGPDRYAVVTEIAARDG-- 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V + T+ L        AL G  SQ +R+  L   +DG   V +AT VAA
Sbjct: 249 RVLLFLDTKHAVDQLTRHLRASGVPAGALHGGKSQPQRTRTLAQFKDGGITVLVATGVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+  EA V
Sbjct: 309 RGLHIDDLDLVVNVDPPADPKDYVHRAGRTARAGASGSVVTLVTAGARRETSRMMAEAGV 368

Query: 366 SVVWEPAPSVEA 377
                   S EA
Sbjct: 369 EAAVTKVRSGEA 380


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 350 LPARLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 409

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F    +  P A+ +APTRELA Q+  E     +  G  V   +GG S+  +   L+
Sbjct: 410 RLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEEQSFSLR 469

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 470 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 529

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    + I +      
Sbjct: 530 PDTDEAEDPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGNVGEAVD 589

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   +A  D R   + +IL     +   IVF + + +     + + +  F  V L 
Sbjct: 590 TVEQRVEFIAGEDKRKKRLADILASGEYRPPIIVFVNIKRNCDAVARDIKQMGFSAVTLH 649

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 650 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 709

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 710 GRAGKSGVAITFL 722


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 182/332 (54%), Gaps = 8/332 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T +Q       L+ +D++  A+TGSGKT   G  + + +L    R +  + P  +
Sbjct: 10  GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKT--LGYLIPAFILLRRRRNNVQNGPTVM 67

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+  E       + V  A   GG S + + ++L  GA +VV TPGRL D 
Sbjct: 68  VLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPGRLNDI 127

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LM++AT    +  +A 
Sbjct: 128 LESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAG 187

Query: 199 NYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTR 254
           +   + V+VNI S  E   +  I     +V+  ++   +  ILR    G+K  I+FCST+
Sbjct: 188 DLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSK-VIIFCSTK 246

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               +  + +  + F    + G+ SQ ER   L   R G++ + +ATDVAARG+D+ D+ 
Sbjct: 247 KLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIR 305

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +VI+ +  +  E+ +HR GRTGRAG  G + F
Sbjct: 306 VVINYDFPTGIEDYVHRIGRTGRAGATGWAWF 337


>gi|289209627|ref|YP_003461693.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288945258|gb|ADC72957.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 440

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 189/347 (54%), Gaps = 11/347 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   T +Q   L   L  +DV   AQTG+GKT AF +A  + LL  
Sbjct: 15  DLPEAVQAGIRATGFETCTPIQALTLPIALAGRDVAGQAQTGTGKTAAFLIATFNRLL-- 72

Query: 66  NDRFSPA-----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             R +PA     +   AL +APTRELA+Q+ ++ E L  +TG+ +A+  GG     +R  
Sbjct: 73  --RQAPAPDRRATDVRALIVAPTRELAIQIHKDAEMLGRETGLKLALAYGGTGYDSQREQ 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKK 179
           L+ GA I++GTPGR+ D+ + K   + H + VVLDEAD M DLGF  D+ F++   +P  
Sbjct: 131 LEAGADILIGTPGRIIDYFKQKVFGLGHTEVVVLDEADRMFDLGFIKDVRFLMRRCAPAS 190

Query: 180 RRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+S  +  LA  +  +  +V + +E      +       A  ++   ++ +
Sbjct: 191 ERLSMLFSATLSLRVMELAYEHMSNPEKVQVEAETLTADRVRQVIYYPANEEKIPLLLGL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            R    + AIVF +T+    +    L  +  +   LSG++ Q +RS+ L+    G     
Sbjct: 251 ARDLKPERAIVFVNTKHGAEKVCDWLNVNGQKAALLSGDVPQNKRSSLLERFTAGEYAFL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRT RAG +G ++
Sbjct: 311 VATDVAARGLHIPAVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAI 357


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 193/372 (51%), Gaps = 16/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 161 FPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLP-AVVHINNQ 219

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL+ G  
Sbjct: 220 PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVE 279

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 280 IVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWS 339

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           AT    +  LA+ +  + ++VNI   S +  H+ +     +V + D +  ++ +++    
Sbjct: 340 ATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQ----IVDVCDENEKLMKLIKLLTD 395

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  + 
Sbjct: 396 ISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSIL 455

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  
Sbjct: 456 VATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAND 515

Query: 359 L---FREANVSV 367
           L    REAN ++
Sbjct: 516 LIQVLREANQTI 527


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 9/361 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 102 FPQYVIDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINHQ 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++ + Y K+  + + C+ GG     + RDL+ G 
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQV-QQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGV 219

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 220 EICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 279

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++NI +     +    + V V + +++DN ++ ++    A
Sbjct: 280 SATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMA 339

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 340 EKENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLF 360
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+ R+A  L 
Sbjct: 400 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNL-RQARDLV 458

Query: 361 R 361
           R
Sbjct: 459 R 459


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 180/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  + +DV+  AQ+G+GKT    + L   L       +      AL
Sbjct: 48  GFEKPSAIQQRAVLPITQGRDVIAQAQSGTGKTSLIAITLCQML------DTTLREVQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     V    CIGG SV  + R L+NG HIV GTPGR+ D 
Sbjct: 102 VLSPTRELATQTEKNILAIGDHMAVQAHACIGGKSVGDDIRKLENGVHIVSGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K +VLDEADEML+ GF++ I  I    P + ++++ SAT+   +  +  
Sbjct: 162 IKRRSLRTRNIKTLVLDEADEMLNKGFKEQIYDIYRYLPPETQVVLVSATLPHEVLEMTH 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 222 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + ++ F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LVI
Sbjct: 282 DWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKGATRVLITTDVWARGLDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L ++ E  +HR GR+GR GRKG+++
Sbjct: 342 NYDLPNSRELYIHRIGRSGRFGRKGVAI 369


>gi|261868794|ref|YP_003256716.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414126|gb|ACX83497.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 418

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 187/338 (55%), Gaps = 3/338 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ +AL+++G+   T +Q   L   LR KDV   AQTG+GKT+AF  AL   LL    + 
Sbjct: 19  LVLQALNDKGFDFCTPIQALSLPITLRGKDVAGQAQTGTGKTIAFLSALFHHLLTYPKQ- 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           + A+ P AL +APTRELAVQ+  + +     T    A+  GG    ++ + ++NG  +++
Sbjct: 78  TEANQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIENGVDVLI 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSA 187
           GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L   P  ++R  ++FSA
Sbjct: 138 GTTGRVIDYVKQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQRLTMLFSA 197

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA         V I  E +    I       +  D+   ++ +L     +  
Sbjct: 198 TLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPSNRDKMPLLLTLLEEEWPERC 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG
Sbjct: 258 IVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKFTDGDLDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + + ++  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 318 LHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISI 355


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 190/366 (51%), Gaps = 18/366 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----P 75
           YV  T VQ   +      +D++  AQTGSGKT AF   + S ++ +     P       P
Sbjct: 157 YVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYP 216

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LA+ ++PTRELA Q+  E      +TGV V V  GG  V+++ R+L+ G  I+V TPGRL
Sbjct: 217 LAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRL 276

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191
            D +    +++  +K + LDEAD MLD+GF   I  I+       P  R+ ++FSAT   
Sbjct: 277 NDLLERGRVSLQMVKFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPR 336

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKN-- 246
            I  LA ++  + + + +         I  R   V  SD+ + ++++L   R +G +   
Sbjct: 337 EIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQ 396

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         L  + F    + G+ SQQER  AL+  + GR  + +ATDVA
Sbjct: 397 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVA 456

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           ARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G++      N   M +    L +
Sbjct: 457 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTSMAKPLAELMQ 516

Query: 362 EANVSV 367
           EAN  V
Sbjct: 517 EANQEV 522


>gi|291225666|ref|XP_002732826.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23-like
           [Saccoglossus kowalevskii]
          Length = 768

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 186/370 (50%), Gaps = 28/370 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLL 63
           +P  I + +   GY   T +Q   +   L+ +DV+  A+TGSGKT AF + L    S+L 
Sbjct: 346 LPDYIIDVIDSMGYKEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVWISSLP 405

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 406 KIARQEDVDQGPYAVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQGFKLRM 465

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF  D++ IL+  P      
Sbjct: 466 GCEIVIATPGRLIDVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLPVSNQKP 525

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ P +  +A+NY +    V+I S  +    
Sbjct: 526 DTDDAEDHDKLLANFASKHKYRQTVMFTATMPPPVERIARNYLRRPAVVHIGSVGKPVDR 585

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V   ++   +V++L        + F + +       K L +  +    L G  
Sbjct: 586 VEQVVYMVKQQEKRQKLVHLLEAGFEPPVMTFVNQKKGCDVLAKSLEKMGYNATTLHGGK 645

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  AL  +++G   + + TDVA RGID+ D+ +VI+ +++ N E+  HR GRTGRA
Sbjct: 646 SQEQREFALASLKNGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYTHRIGRTGRA 705

Query: 339 GRKGMSVFVI 348
           G+ G++V ++
Sbjct: 706 GKTGLAVSLV 715


>gi|160900768|ref|YP_001566350.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160366352|gb|ABX37965.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 707

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 193/379 (50%), Gaps = 48/379 (12%)

Query: 14  ALSERGYVNLTSVQE-----AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           A+++ GY   T+VQ      A+ + D    D++VS+QTGSGKT AF L +  TL+ +   
Sbjct: 102 AVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAFLLPVLHTLIQQKAD 161

Query: 66  --------------------------NDRFSP-------ASAPLALAIAPTRELAVQVGR 92
                                     N R  P       A+ P AL + PTRELA QV  
Sbjct: 162 EEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALILCPTRELAQQVAH 221

Query: 93  E-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
           + +E +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R   + +  ++ 
Sbjct: 222 DAIELVKHCRGIRIANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSMQIKLDQVQF 280

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA----VRV 207
           +V+DEAD MLDLGF DD+  + D + ++++ +MFSAT +P I  LA     D      +V
Sbjct: 281 LVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMRVMHDGGSGVKKV 340

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
            I +   +H+ I         S     +++  LR      AIVF ST+         L +
Sbjct: 341 TIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFASTQVECDGLANDLQQ 400

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F  VAL G LSQ  R+  L  +R G+ +V +ATDVAARGID+P +  V +  L    E
Sbjct: 401 DGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVPTITHVFNYGLPMKAE 460

Query: 327 NLLHRSGRTGRAGRKGMSV 345
           +  HR GRTGRAGR+G++V
Sbjct: 461 DYTHRIGRTGRAGREGVAV 479


>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 462

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 186/346 (53%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL+++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 26  FDLSPELL-KALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQHLL 84

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV ++ E L   T + +A   GGV+          
Sbjct: 85  -DYPRRKPG-APRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 142

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++  
Sbjct: 143 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 202

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+++     R+   I+   Y A   +   +   +   +
Sbjct: 203 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHAD--SYEHKVKLLARFI 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   +++L +   +   L GE++Q +R+NA+  +++G   + +
Sbjct: 261 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V
Sbjct: 321 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAV 366


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 187/358 (52%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 144 FPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 202

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 203 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 262 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 321

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++  +  
Sbjct: 322 SATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           + A   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +AT
Sbjct: 382 NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVAT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 442 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 499


>gi|227114353|ref|ZP_03828009.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSI 357


>gi|163801460|ref|ZP_02195359.1| DNA and RNA helicase [Vibrio sp. AND4]
 gi|159174949|gb|EDP59749.1| DNA and RNA helicase [Vibrio sp. AND4]
          Length = 410

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/325 (35%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDVL  A TGSGKT A+GL L        ++ S      AL + PT
Sbjct: 24  TDIQALAIPELLNGKDVLALANTGSGKTFAYGLPLL-------EKLSVNPEQKALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV + +  +    G+      GGV   ++++ L    HI+V T GRL D     G
Sbjct: 77  RELATQVSQAINQVGQLLGLNAVCLCGGVDKAQQQQALATNPHIIVATTGRLVD-FADNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S +  +VLDEAD +LD+GF  D++ +   +  +R+  MFSAT S  +   AK     
Sbjct: 136 LDLSSIDYLVLDEADRLLDMGFWPDVQNVAGQTSNQRQTAMFSATFSEQLKCKAKQLMNA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V +  EN  + DI     LV    +  A++ +++ +    A+VF S + +     K 
Sbjct: 196 PKQVAVHQENSTNQDIAETLYLVNKGSKTKALIELIKQNSWTQALVFVSAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKTGITTNALHGNKSQVEREEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + EN +HR GRT RAG++G ++ ++
Sbjct: 316 HAENYIHRVGRTARAGQQGTAMSLV 340


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 184/331 (55%), Gaps = 13/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +++   L       +      AL
Sbjct: 51  GFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISVLQGL------NTTIRETQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 105 ILSPTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    ++ +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 165 IRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +  + +R+ +  +      I  +   VA+ DR+    + + ++        A++FC+TR
Sbjct: 225 KFMTNPIRILVKRDELTLEGI--KQFFVAV-DREEWKFDTLCDLYDTLTITQAVIFCNTR 281

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L E  F V A+ G++ Q+ER   ++  R G +R+ I+TDV ARG+D+P + 
Sbjct: 282 RKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLLISTDVFARGLDIPQVS 341

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LV++ +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 LVVNYDLPNNRELYIHRIGRSGRFGRKGVAI 372


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 174/315 (55%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD +  AQ+G+GKT  F + +   +  ++          AL ++PTRELA Q+   ++ L
Sbjct: 64  KDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQ------ALILSPTRELATQIQNVVKHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +    CIGG +V  + + LQ G  IV GTPGR+ D I+ + L   ++K ++LDEA
Sbjct: 118 GDYMNIHTHACIGGKNVGDDVKKLQQGQQIVSGTPGRVLDVIKRRNLQTRNIKVLILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE+   GF++ I  I    P   ++++ SAT+S  +  +   +  D V++ +  +    S
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPAVQVVVVSATLSREVLEMTSKFTTDPVKILVKQDEISLS 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    V     D + + + ++        A++FC+T+  V+  T  + +  F VV++ G
Sbjct: 238 GIKQYYVQCEQEDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q ER + +   R G +RV I+TDV ARGID+  + LVI+ +L ++ EN +HR GR+G
Sbjct: 298 DMKQDERESIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQN 351
           R GRKG ++ +I ++
Sbjct: 358 RFGRKGTAINLITKD 372


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 192/341 (56%), Gaps = 17/341 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLALAIA 81
           T +Q A     L  +DV+  A+TGSGKT+AF +     +  L +N +      P A+ ++
Sbjct: 203 TPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQK---NKGPRAVVVS 259

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA+Q   ++  L   +G+      GGV    + R L+  A IVV TPGRL D I  
Sbjct: 260 PTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKT-ADIVVATPGRLNDLINQ 318

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKN 199
              ++S  + VVLDEAD MLD GF ++I  I++++P   KR+ LMF+AT   ++  LA  
Sbjct: 319 GCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELAST 378

Query: 200 YQKDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-----IVF 250
           +    V++    N   + R +S I  +  +V   D++  ++ +L+ + + +      +VF
Sbjct: 379 FMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVF 438

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +   +R    + +  F+V  + G+LSQ++R+ +L+  + G   V +ATDVAARG+D+
Sbjct: 439 CLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDI 498

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           P ++LVI+       E+ +HR GRTGRAG+ G+++ +  ++
Sbjct: 499 PAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEH 539


>gi|195116347|ref|XP_002002717.1| GI17537 [Drosophila mojavensis]
 gi|193913292|gb|EDW12159.1| GI17537 [Drosophila mojavensis]
          Length = 389

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 176/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 35  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 89  ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 149 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 209 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ +  H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 269 DQLTQEMTSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 329 NYDLPSNRENYIH 341


>gi|195473739|ref|XP_002089150.1| eIF-4a [Drosophila yakuba]
 gi|194175251|gb|EDW88862.1| eIF-4a [Drosophila yakuba]
          Length = 415

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 61  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 114

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 115 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 174

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 175 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 234

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 235 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 294

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 295 DQLTQEMSLHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 354

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 355 NYDLPSNRENYIH 367


>gi|297745425|emb|CBI40505.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L      + S  ++ + 
Sbjct: 277 KAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQ 336

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           +  P    + L I PTRELA Q   E   L      + V V IGG  +  E++ +Q N  
Sbjct: 337 KRPPI---VVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPC 393

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+ 
Sbjct: 394 QILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 453

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSAT+   +  +     ++D   +N   E  +  HS +    ++  L      +  +L
Sbjct: 454 LLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALL 513

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H A +     +VFC+T         +L E    V  +     Q  R+      R  + 
Sbjct: 514 KDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKG 573

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++
Sbjct: 574 LILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLL 626


>gi|254381080|ref|ZP_04996445.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339990|gb|EDX20956.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 508

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 86  DMPAELLAALGTQGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 145

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 146 R---AEARQPLALILVPTRELAQQVADALTPYARAVKLRLATVVGGMPIGRQANALRGGA 202

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 203 EIVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 262 FSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHATTTEIAARDG- 320

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 321 -RVIMFLDTKHAVDRLTQDLLSSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 379

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL + A 
Sbjct: 380 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMNRLMQAAG 439

Query: 365 V 365
           +
Sbjct: 440 I 440


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 196/357 (54%), Gaps = 11/357 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPL 76
           +G+   + +Q       L  +D +  A TGSGKT+AFG+ AL        ++ +    P 
Sbjct: 6   KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPR 65

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L ++PTRELA Q+   L    A  G+      GG S   +   L++G  IV+GTPGR+ 
Sbjct: 66  VLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMK 125

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+ +MFSAT  PA+  L
Sbjct: 126 DLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQL 185

Query: 197 AKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAK--NAIVF 250
           A+ +   + ++V I SE+   ++ D   ++  L D  RD+ +V +L +YH A+    +VF
Sbjct: 186 AQEFMDPNPIKVVIGSEDLA-ANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVF 244

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IATDVA+RG+D+
Sbjct: 245 VLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDI 304

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           PD+E+VI+       E+ +HR GRTGRAG+KG++  F   +N     E   + REA 
Sbjct: 305 PDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAG 361


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 188/354 (53%), Gaps = 8/354 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 121 FPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHINHQ 179

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R S    P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 180 PRLSRNDGPIALILAPTRELAQQI-QQVASDFGMSSQVRNTCIFGGAPKGPQARDLERGV 238

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 239 EICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMW 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+ +  D +++NI S +   + +I     +    ++++ ++ +L     
Sbjct: 299 SATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLEEISN 358

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ + +AT
Sbjct: 359 EPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVAT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
           DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  +
Sbjct: 419 DVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHK 472


>gi|312194633|ref|YP_004014694.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225969|gb|ADP78824.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 543

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 4/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  G V+  ++QE  L   L   D++  A+TG+GKT+ FG+ +   +L  ++     
Sbjct: 2   DTLAAAGIVHPFAIQELTLPLALAGTDIIGQARTGTGKTLGFGIPVIQKVLGPDEGAD-- 59

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL VQV  +L+       + V    GG +   +   L++G  +VVGTP
Sbjct: 60  GRPQALIVVPTRELCVQVTNDLDRAGKGRRIRVLSVYGGRAYEPQTSALKSGVDVVVGTP 119

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  R + LN+ ++  +VLDEADEMLDLGF  D+E I+   P  R+ ++FSAT+   
Sbjct: 120 GRLLDLARQRTLNLGNVATLVLDEADEMLDLGFLPDVERIVALLPAGRQTMLFSATMPGP 179

Query: 193 ITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +  LA+ +    V V      E R               D+   +  +L+  G   +IVF
Sbjct: 180 VIALARRFMIRPVHVTAEQPDEGRTVPTTSQHVFRAHAMDKMEVLSRVLQAEGRSLSIVF 239

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR +  +  + LA   F    + G+L Q +R  AL+  R G+  V +ATDVAARGID+
Sbjct: 240 VRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGIDV 299

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ +   +    LHR GRTGRAG  G++V  +
Sbjct: 300 GGVTHVINYQCPEDESVYLHRIGRTGRAGGSGVAVTFV 337


>gi|255036249|ref|YP_003086870.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949005|gb|ACT93705.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 217/418 (51%), Gaps = 13/418 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ + + +ALSE GY   T +Q  + +  +  KDV   AQTG+GKT A+ L  
Sbjct: 1   MMTFEDLNLTKPLLKALSEAGYTTPTPIQHKVFSVMMSGKDVCGIAQTGTGKTFAYLLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    DR      P  L + PTREL VQV  E+  L A T + V    GG ++  + 
Sbjct: 61  LRQIEYAKDRL-----PQLLVLVPTRELVVQVVEEVRKLAAYTTLQVVGVYGGGNIKVQM 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L  GA +VV TPGRL D      L    +K +V+DE DEML+LGFR  ++ ILD  P+
Sbjct: 116 AELHEGADVVVATPGRLFDLAMNGSLKTKSVKKLVIDEVDEMLNLGFRTQLKNILDLLPQ 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           +R+ L+FSATI+  +  L K Y  D VR+  A       +I+ +A  V     + N +  
Sbjct: 176 RRQNLLFSATITQEVEALMKAYFNDPVRIEAAPVGTPLDNIEQQAYYVPNFYTKVNLLDK 235

Query: 238 ILRYHGAKNAI-VFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L  H   N + +F +T+    + + ++   +L ++  +     Q  R N ++    G  
Sbjct: 236 LLEQHEEMNKVLIFVATKKLADQLYGQLELGYLDRIGVIHSNKDQNHRFNTIRQFHAGNY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ IATD+ ARG+D+ ++  V + ++   PEN +HR GRTGRA RKG+++  I +  +  
Sbjct: 296 RLLIATDIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADRKGIAISFISEREKPF 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVDVLLAKHD 412
            E++    +  +   P P  E ++  +     ++P +F+ +I+    K  DV  A H+
Sbjct: 356 QEQIEALMDFEIPVLPLP--EDLKISEVLTPDEEPKIFMKNIELKRPKREDVGAAFHE 411


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 199/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 284 SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 342

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 343 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 401

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 402 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 461

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D V++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 462 WSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 521

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 522 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 581

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 582 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 641

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 642 KVLEEANQAI 651


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 185/352 (52%), Gaps = 10/352 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 126 FPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 184

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 185 PLLAPGDGPIVLILAPTRELAVQIQTEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 243

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 244 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 303

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I +   I+ 
Sbjct: 304 SATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 363

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G K  ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +A
Sbjct: 364 NRGNK-CLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVA 422

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ F   +N
Sbjct: 423 TDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 474


>gi|120610574|ref|YP_970252.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120589038|gb|ABM32478.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 619

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 200/392 (51%), Gaps = 61/392 (15%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL-------REKDVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   T VQE  +   +       +  D++VS+QTGSGKT AF L +  
Sbjct: 58  PELV-QAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAFLLPVLH 116

Query: 61  TLLAE------------------------------------NDRFSPASAPLALAIAPTR 84
           TL+ +                                    N R   A+ P AL + PTR
Sbjct: 117 TLIGQQAAAQAAARAEYEAAVAEAAARGEPAPKRAKRKDPTNPRHFKAATPGALVLCPTR 176

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ VA  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 177 ELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQ 235

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I + + ++++ +MFSAT +P I  LA     D
Sbjct: 236 IKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAMRVMHD 295

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYHGAKNAIVFCST 253
                 +V I S   +H++I  + VL      DNA      + + LR      A+VF ST
Sbjct: 296 GGASVKKVQIDSPQEKHANI--KQVLFWA---DNAQHKRKMLDHWLRDTSINQAVVFAST 350

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +
Sbjct: 351 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 410

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V +  L    E+  HR GRTGRAGR G++V
Sbjct: 411 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAV 442


>gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 418

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 5/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++ E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +   +L + 
Sbjct: 16  IPTLV-ERLEALEYRQPTPIQSHTIPDVLDGKDIVGGANTGSGKTAAFSLPILQKILEQE 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +     +    L + PTRELA QV   ++    + +  +      GGVSV+ +   L+ G
Sbjct: 75  ESNRRGNYVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           + I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL+  PKK++ L+
Sbjct: 135 SDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELLPKKKQTLL 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +TTLA++   D V V + S   + S +  R   V    +   + ++++ H  
Sbjct: 195 FSATFPDKVTTLAQHLLNDPVEVQLQSA--EASTLVQRVFSVNKGQKTAVLAHLIKQHKW 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IATD+A
Sbjct: 253 RQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATDIA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 313 ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 356


>gi|195146542|ref|XP_002014243.1| GL19047 [Drosophila persimilis]
 gi|194106196|gb|EDW28239.1| GL19047 [Drosophila persimilis]
          Length = 386

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 178/313 (56%), Gaps = 10/313 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A    +L + D  +      AL
Sbjct: 35  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIA----ILQQID--TAVRECQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L   T +    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 89  ILAPTRELATQIQRVVMALGECTRM---PCIGGTNVREDARILESGCHVVVGTPGRVYDM 145

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   H+K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 146 INRKVLRTQHIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 205

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 206 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 265

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 266 DQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 325

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 326 NYDLPSNRENYIH 338


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 395 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 454

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 455 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 514

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 515 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 574

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 575 DTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 634

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 635 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 694

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 695 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 754

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 755 GKTGCAISFVTKD 767


>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
           MBEL55E]
          Length = 445

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 186/346 (53%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL+++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV ++ E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPG-APRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIFNK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++  
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTF 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+++     R+   I+   Y A   +   +   +   +
Sbjct: 186 LFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHAD--SYEHKVKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   +++L +   +   L GE++Q +R+NA+  +++G   + +
Sbjct: 244 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V
Sbjct: 304 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAV 349


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 190/347 (54%), Gaps = 11/347 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 279 VTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMADGVAASKFSE 338

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +I+ GT
Sbjct: 339 VQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNILCGT 398

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 399 PGRLLDIIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSPGMPSKEDRQTLMFS 457

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    + + ++++LR  G +
Sbjct: 458 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTE 517

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 518 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 577

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  ++ V++ +L S+ +  +HR GRTGR G  G +V F  P++
Sbjct: 578 RGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFNPES 624


>gi|315047684|ref|XP_003173217.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
 gi|311343603|gb|EFR02806.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
          Length = 567

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 207/376 (55%), Gaps = 17/376 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 101 KAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 158

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 159 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 215

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK  R+ ++FSA
Sbjct: 216 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTMLFSA 275

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 276 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 334

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 335 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 394

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  + Q  +       RE
Sbjct: 395 AARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFL-QPSEVGFINHLRE 453

Query: 363 ANVSVVWEPAPSVEAI 378
           A V VV    P+   I
Sbjct: 454 ARVPVVEFEFPTKHII 469


>gi|307245417|ref|ZP_07527505.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254371|ref|ZP_07536209.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258830|ref|ZP_07540562.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853758|gb|EFM85975.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862670|gb|EFM94626.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867181|gb|EFM99037.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 412

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  ND  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHYLLT-NDSETNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 RVRELAYEDMDNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 354


>gi|85095256|ref|XP_960042.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
 gi|74615933|sp|Q7S5R1|DBP3_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-3
 gi|28921501|gb|EAA30806.1| hypothetical protein NCU05782 [Neurospora crassa OR74A]
          Length = 614

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 194/361 (53%), Gaps = 29/361 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSP---ASA 74
            Y N T +Q A     L  +DV+  A+TGSGKT+AF L    +L +    +F+     + 
Sbjct: 198 AYTNPTPIQSASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAH 257

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QNGAHIVVGT 131
           P A+ ++PTRELA+Q    L  L +  G+  AVCI G S   E+R+L    NG  I+  T
Sbjct: 258 PRAVIVSPTRELAMQTHAALSGLASLVGLS-AVCIFGGSDKNEQRNLLYKNNGVDIITAT 316

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           PGRL D +    ++++++   VLDEAD MLD GF +DI+ IL   P K  R+ LMF+AT 
Sbjct: 317 PGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKLILSGCPPKEQRQTLMFTATW 376

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSD--------------IDYRAVLVALSDRDNAI 235
              I  LA++Y  +  +V I    R   D              I+ +  +V    ++  +
Sbjct: 377 PLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRIEQKVEVVDPRGKEFRL 436

Query: 236 VNILR--YHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +L+    G++     +VFC  +    R  + L+    +V ++ G+L Q +R+ +L+  
Sbjct: 437 YELLKEAQKGSQKDDRILVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLEAF 496

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   V +ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++ +  +
Sbjct: 497 KSGTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTE 556

Query: 351 N 351
           +
Sbjct: 557 H 557


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +  +G+   TS+Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 114 FPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINSQ 172

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P+AL +APTRELA Q+ +  +     +G+      GG     + RDL  G  
Sbjct: 173 PKLGRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVE 232

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 233 IVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 292

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+++ KD  ++N+ S     +    + + V    +++N +  +L+   A+
Sbjct: 293 ATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAE 352

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           +    IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 353 SENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 412

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +  F  P N  +  +  ++
Sbjct: 413 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKANDLIQV 472

Query: 360 FREAN 364
            +EAN
Sbjct: 473 LKEAN 477


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 220 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 279

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 280 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 339

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 340 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 399

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 400 DTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 459

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 460 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 519

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 520 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 579

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 580 GKTGCAISFVTKD 592


>gi|297742558|emb|CBI34707.3| unnamed protein product [Vitis vinifera]
          Length = 754

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 188/350 (53%), Gaps = 14/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70
           +ALS  GYV +T VQEA L+  L  KD LV A+TG+GK+ AF L     +L    ++R  
Sbjct: 298 KALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKATSSNRIQ 357

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
                L L + PTRE+A Q+  E    L    G+ V   IGG     +++ L+ +   I+
Sbjct: 358 RVPPILVLILCPTREIASQIAAEANVMLKYHDGIGVQTLIGGTRFKFDQKRLESDPCQII 417

Query: 129 VGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL DHI  KG   + +  LK +VLDEAD +LDLGFR D+E I+D  P++R+ L+F
Sbjct: 418 VATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLLDLGFRKDMEKIVDCLPRQRQSLLF 477

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV-NILRYH 242
           SAT+   +  +++   +K+   V+        +    R + LVA       IV ++L+ H
Sbjct: 478 SATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAKVRQSYLVAPHKLHFQIVYHLLKDH 537

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +      IVFC+T    S    +L E    V  +     Q  R+   +  R+ +  V 
Sbjct: 538 ILQVPDYKVIVFCTTAMVTSLVFLLLQEMKVNVREIHSRKPQIYRTRISEEFRESKRLVL 597

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           I +DV+ARGI+ PD+ LVI   + S+ E  +HR GRTGR G++G  + ++
Sbjct: 598 ITSDVSARGINYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGILLV 647


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 220 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 279

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 280 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 339

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 340 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 399

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 400 DTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 459

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 460 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 519

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 520 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 579

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 580 GKTGCAISFVTKD 592


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 182/330 (55%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D++  +Q+G+GKT  F +++  +L       + ++   AL
Sbjct: 52  GFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQSL------DTSSNETQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  L     V    CIGG SV  + R L  G  +V GTPGR+ D 
Sbjct: 106 VVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRRLDFGVQVVSGTPGRIFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   ++K +V+DEADEML+ GF++ I  I    P   ++L+ SAT+   +  L +
Sbjct: 166 IRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTR 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  + V+V +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 226 KFMNEPVKVLVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 283

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V A+ G++ Q+ER   +Q  R G +RV I TDV  RG+D+  + L
Sbjct: 284 KVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLITTDVWGRGLDVQQVSL 343

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI  +L +N E  +HR GR+GR GRKG+++
Sbjct: 344 VICYDLPNNRELYIHRIGRSGRFGRKGVAI 373


>gi|196012612|ref|XP_002116168.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
 gi|190581123|gb|EDV21201.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
          Length = 976

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 191/358 (53%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L    Y   T VQ   +   +  +DV+  A+TGSGKT+AF L +   +L +N   SP 
Sbjct: 319 DSLKRVKYEKPTPVQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQN-ALSPG 377

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L + PTRELA+Q+ RE        G+ V    GG  +  +  +L+ GA IVV TP
Sbjct: 378 DGPIGLIMTPTRELAIQITRECRRFTKAIGMHVVCVYGGTGISEQIAELKRGAEIVVCTP 437

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  +VLDEAD M D+GF   +  I++S    R+ +MFSAT 
Sbjct: 438 GRMIDMLLANNGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVESIRPDRQTVMFSATF 497

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAI 248
              +  LA+      + + +   +   SDI+   V++   D+    +  +  Y    + +
Sbjct: 498 PRQMEALARKMLTKPIEIEVGGRSIVCSDIEQHVVIINEEDKFLKLLELLGLYQPYGSVL 557

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + S  +  K L +  +  ++L G + Q +R + +   ++G  ++ +AT VAARG+
Sbjct: 558 VFVEKQESSDQLLKDLMKASYPCLSLHGGMDQSDRDSTIVDYKNGVIKLLVATSVAARGL 617

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+ +L LV++ +  ++ E+ +HR+GRTGRAG KG +  +I ++  + A  + R   +S
Sbjct: 618 DVKNLILVVNYDCPNHYEDYVHRAGRTGRAGNKGYAYTLITEDQGKYAGDIIRALELS 675


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 187/372 (50%), Gaps = 17/372 (4%)

Query: 5   ENIPQVIGEALSER------------GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+PQ I    S R            GYV  T +Q+  +      +D++  AQTGSGKT 
Sbjct: 204 ENVPQPIKNFESARLRGIVLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTA 263

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
           AF L + + +L E+        P A+ ++PTRELA+Q+  E       T + +++  GG 
Sbjct: 264 AFLLPILNNILDESHDLE-IGKPQAVIVSPTRELAIQIFNEARKFSYTTYLKISIVYGGT 322

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S   +   +  G H+++ TPGRL D +    +     + +VLDEAD MLD+GF D +  I
Sbjct: 323 SFKYQNECITKGCHVLIATPGRLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSDSMRKI 382

Query: 173 LDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           +     +   + LMFSAT    I  +A  + K+ V V I       SD+      V   +
Sbjct: 383 MHHQTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVTIGVVGGACSDVQQTVYEVNKFN 442

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ ILR  GA   IVF  T+          +E  F   ++ G+  Q +R  AL+  
Sbjct: 443 KRSKLMEILR-EGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRDF 501

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           + G  +V IAT VA+RG+D+ +++ VI+ ++ +N ++ +HR GRTGR G  G +  F  P
Sbjct: 502 KTGTMKVLIATSVASRGLDIKNVKHVINYDMPTNIDDYVHRIGRTGRVGNSGRATSFFDP 561

Query: 350 QNMQRRAERLFR 361
           +  +  A  L +
Sbjct: 562 EQDRTLAADLIK 573


>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
 gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
          Length = 437

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 8/376 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E+GY   + +Q   +   L   DV+ +AQTG+GKT  F L +   L     R  
Sbjct: 14  ILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLERL-----RHG 68

Query: 71  P---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P        AL + PTRELA QV   +        +   V  GGV ++ +   L+ GA I
Sbjct: 69  PHARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRAGADI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  + + + +  ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSA
Sbjct: 129 LVATPGRLLDLQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T SP+I  LA       V++    EN+    +++      ++ +   + +++  +  +  
Sbjct: 189 TFSPSIRKLAHGLLHQPVQLQATPENQAAPTVEHLLHPCDMARKPELLTHLIASNDWQQV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R    L     +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 249 LVFSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVATDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++          + R    S+
Sbjct: 309 IDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIERLIGTSL 368

Query: 368 VWEPAPSVEAIRERDA 383
             E  P  E    R A
Sbjct: 369 PSETVPGFEPTVLRAA 384


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L A T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVAEHARELAANTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + ++FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIELIAGETRWRNQTMLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   + ++L+   A   IV
Sbjct: 196 IKDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--NLEHKVELLKHLLKQEEATRTIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V    ++L         L GE++Q +R+  ++ + DGR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  VI+ ++  + +  LHR GRTGRAGRKG+++ ++
Sbjct: 314 IPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLV 352


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 123 FPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+  E+   + ++  +   C+ GGV    + RDL  G 
Sbjct: 182 PLLSPGDGPIVLILAPTRELAVQIQTEIS-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 240

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 241 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 300

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 301 SATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMD 360

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    ++F  T+      T+ L +  +  +++ G+  Q ER   LQ  ++G++ + +AT
Sbjct: 361 DRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKSPIMVAT 420

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 421 DVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 478


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++  GY + T +Q   +   L  +D+L +AQTG+GKT AF L     L   
Sbjct: 7   NLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPALQRLARP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +  P   P  L + PTRELA QV   +    ++L  ++G +    +GG+    + R L
Sbjct: 67  AQK--PGRGPRVLVLTPTRELAQQVTDAVRSYGKFLRIRSGAI----LGGMPYREQLRLL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++V TPGRL D +  + L++S L+ ++LDEAD MLD+GF DD++ +  +SP  R+
Sbjct: 121 SAPVDLIVATPGRLVDLLDRRSLDLSRLELLILDEADRMLDMGFSDDVDRVAAASPSDRQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240
            L+F+AT+   +  LA     +  R+ +A     H  I+ R  V   LS ++  + +++ 
Sbjct: 181 TLLFTATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVADDLSHKNRLLQHLIT 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AI+F +T+         L        AL G++ Q  R+  +  M+ GR R+ +A
Sbjct: 241 DGDVRKAIIFSATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRLLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N      R+ 
Sbjct: 301 TDVAARGLDVSGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVSYLARIE 360

Query: 361 REANVSVVWEPAPSVEAIR 379
           R    ++     P +E  R
Sbjct: 361 RYIGQTLPEHQIPGLEPRR 379


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 195/370 (52%), Gaps = 28/370 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----AS 60
           ++P+ + E +   GY + T++Q A +   ++ +D++  A TGSGKT AF L L     A 
Sbjct: 363 SLPKRLLELVERVGYKDPTAIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYISAL 422

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L EN+ +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 423 PRLDENE-WRKNEGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAFS 481

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--- 177
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 482 LRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 541

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R+ +M++AT+  A+  +A+ Y +    + I         ++
Sbjct: 542 EKPDTEEAENSMAMSQHQYRQTMMYTATMPAAVERIARKYLRRPAIITIGGVGEAVDTVE 601

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            R  +++  D R   +  IL     +   IVF + + +     + + +  F  V L G  
Sbjct: 602 QRVEMISGEDKRKKRLAEILSSGDFRPPIIVFVNIKRNCDAIAREIKQMGFSSVTLHGSK 661

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q +R  AL  +R+G   V +ATD+A RGID+PD+ LVI+  ++++ E+  HR GRTGRA
Sbjct: 662 TQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRA 721

Query: 339 GRKGMSVFVI 348
           G+ G+++  +
Sbjct: 722 GKSGVAITFL 731


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 190/359 (52%), Gaps = 13/359 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +  AL E  +   T +QE+ +   L  KD+L+ A+TG+GKT AFG+ +   L 
Sbjct: 5   FNQLSNRLQNALEEIEFTKPTPIQESAIPVALEGKDLLIQARTGTGKTGAFGIPIIEKL- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                        AL +APTRELA+Q+   L  L   + + V    GG SV R+   L+ 
Sbjct: 64  --------KRGERALVLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLSLLER 115

Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +VVGTPGR+ D I    L +   K +VLDE D MLD+GFR+DIE+I+   P++R+ 
Sbjct: 116 RIPDVVVGTPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWIVSKLPEERQT 175

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR 240
              SAT+   I  +A+ + K     +I+ E+ +        V+   S+  +   +  ILR
Sbjct: 176 FFVSATVPREIREIARKFMKPGFE-HISVESEELKPRINEIVVRTRSEIHKTEELERILR 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  IVF   + +       L +  + V AL G+++Q+ R   +++ R+ R +V IA
Sbjct: 235 ENDDEKIIVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMKLFRNNRVKVLIA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RG+D+  + ++I+  L  +P    HR GRTGR G +G ++ ++  + +R   R+
Sbjct: 295 TDVASRGLDIEGVSMIINFHLPEDPRVYTHRIGRTGRFGSEGTAISLVSPSEKRNLWRI 353


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 181/347 (52%), Gaps = 18/347 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAE---------NDRFSPASAPLALAIAPTRELAV 88
           +D++  AQTGSGKT AF + + + +            N+    A  P  L IAPTRELA 
Sbjct: 227 RDLMACAQTGSGKTAAFLIPMLNNMFVHGPADSLDRCNEEDRRAQFPTGLVIAPTRELAS 286

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNIS 147
           Q+  E +    ++ V   V  GG ++  +  DL  G +++  TPGRL D I RGK L + 
Sbjct: 287 QIYDEAKKFSYRSHVRPCVVYGGAAIKGQLSDLSRGCNVIFATPGRLIDIIDRGK-LKLD 345

Query: 148 HLKAVVLDEADEMLDLGFRDDI-EFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDA 204
             + +VLDEAD MLD+GF   I E I    P    R+ LMFSAT  P I  LAK++ K  
Sbjct: 346 CCRFLVLDEADRMLDMGFEPQIREIIQRYMPNGDNRQTLMFSATFPPQIQNLAKDFLKSY 405

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKV 263
           + +++        +I    V V   D+ NA+++ + +    N  +VF  T+       + 
Sbjct: 406 IFLSVGRVGSTSENITQSLVWVEEVDKRNALLDFIDFTKEDNLTLVFVETKRGADSLEEF 465

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L    F V ++ G+ +Q ER  AL+  R G+  + +AT VAARG+D+P+++ VI+ +L +
Sbjct: 466 LYNREFSVSSIHGDRTQDERERALKNFRSGKTPIMVATAVAARGLDIPNVKHVINYDLPN 525

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
           + +  +HR GRTGR G  G +        +N+ R    L  EAN  V
Sbjct: 526 DIDEYVHRIGRTGRVGNLGKATSFFNDKNKNLARDLVELLEEANQEV 572


>gi|116693959|ref|YP_839492.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651959|gb|ABK12599.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia HI2424]
          Length = 390

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 162/296 (54%), Gaps = 2/296 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           A+ + PTRELA QV +E+  L  A+  V V    GG  +  + + L++GAHIVVGTPGR+
Sbjct: 3   AMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRI 62

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  
Sbjct: 63  MDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAK 122

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           L++ + ++   + +A E    S I  R   V   +R +A+  +L ++   + I FC+T+ 
Sbjct: 123 LSQQFLRNPKEIKLA-ERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQ 181

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                  VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE 
Sbjct: 182 QCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEA 241

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +     V W P
Sbjct: 242 VINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIEQAQKREVEWHP 297


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 29/366 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-----------NDR 68
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +           N R
Sbjct: 196 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQMYTDGPGEALKAVKGNGR 255

Query: 69  FSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +  +   P++L +APTRELAVQ+  E      ++ V   V  GG ++ ++  DL++G H+
Sbjct: 256 YGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGANIGQQIGDLEHGCHL 315

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D +  + + +   K +VLDEAD MLD+GF   I  I+  D  P K  R  +
Sbjct: 316 LVATPGRLVDMMERRKIALDFCKYLVLDEADRMLDMGFEPQIRRIVEQDCMPPKGVRHTM 375

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   G
Sbjct: 376 MFSATFPKKIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDLLGATG 435

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + I VF  T+  V    + L    +   ++ G+ SQ+ R  AL+  R G++ + +AT 
Sbjct: 436 RDSLILVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQRAREEALRQFRSGKSPILVATA 495

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ ++  VI+ +L S+ E  +HR GRTGRAG  G+            A   F E
Sbjct: 496 VAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRAGNLGL------------ATSFFNE 543

Query: 363 ANVSVV 368
            NV++ 
Sbjct: 544 KNVNIA 549


>gi|183984792|ref|YP_001853083.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
 gi|183178118|gb|ACC43228.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium marinum M]
          Length = 524

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 182/358 (50%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF L + S L     R  PA
Sbjct: 89  EVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVSRLAGRPRR--PA 146

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELA Q+   L+ L A  G+ V    GGV   R+   L +G  IVV  P
Sbjct: 147 R-PTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNSGVDIVVACP 205

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ + +++  ++  V+DEAD M DLGF   +  IL ++P   + L+FSAT+   
Sbjct: 206 GRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRLLFSATLDNG 265

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L   +  DAV  ++ S +     + +    V+ +     +V+ L   G    I+F  
Sbjct: 266 VDKLVNRFLHDAVLHSVDSSDSPVPQMVHHVFHVSGAAAKKDLVHRL-ASGTGRRILFMR 324

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K L E     V L G LSQ  R   L     G ARV +ATD+AARG+ +  
Sbjct: 325 TKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVATDIAARGVHVDG 384

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           +ELV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R A + V  +
Sbjct: 385 IELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALMRRAGIRVTPQ 442


>gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 416

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 191/348 (54%), Gaps = 12/348 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +P ++ E L E  Y   T +Q   +   L  +D++  A TGSGKT AF L +   +L   
Sbjct: 16  LPTLV-ERLEELEYSQPTPIQSYAIPHVLDGRDIVGGANTGSGKTAAFSLPILQKILQQD 74

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRD 120
            ++N R +  S    L + PTRELA QV   ++    + +  V      GGVSV+ +   
Sbjct: 75  ASDNRRGNYVSH---LILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQMLA 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+ IVV TPGRL D +    + +  +K +VLDEAD ML LGF D++  IL+  P+K+
Sbjct: 132 LRGGSDIVVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILELLPEKK 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    +TTLA++  ++ V V + S   + S +  R   V   ++   + ++++
Sbjct: 192 QTLLFSATFPDKVTTLAQHLLREPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIK 249

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  ++F + + + +   + L++         G+  Q  R+  L+  + G  +V IA
Sbjct: 250 QHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGEIQVLIA 309

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 310 TDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 16/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P +  +DV+  +Q+G+GKT  F + L   +  +           AL
Sbjct: 59  GFNKPSMIQKRAIRPIVSGRDVIAQSQSGTGKTATFSIGLLQVIDTQ------LRETQAL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L  +  V    CIGG +V  + R L  G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIQKVVLALGDRMNVQAHACIGGTNVGEDIRKLDYGQHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLD---------LGFRDDIEFILDSSPKKRRMLMFSATI 189
           I  + L    LK  V+DEADEML          LGF+D I  I    P   ++++ SAT+
Sbjct: 173 ITRQNLRTDSLKVFVMDEADEMLTKGNELLYLILGFKDQIYDIYRFLPPGIQVVVISATL 232

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI 248
              I  +   +  + VR+ +  +      I    V V   D +   + ++        A+
Sbjct: 233 PHEILEMTGKFMTEPVRILVKRDELTLEGIRQYFVHVEREDWKFETLCDLYDSITISQAV 292

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TR  V    + + E  F V A+ GE+ Q++R+  ++  RDG  RV I+TDV +RG+
Sbjct: 293 VFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKFRDGIYRVLISTDVWSRGL 352

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P + LVI+ ++ +N E  LHR GR+GR GRKG ++
Sbjct: 353 DIPGVSLVINYDVPTNREAYLHRIGRSGRYGRKGCAI 389


>gi|313500956|gb|ADR62322.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 182/321 (56%), Gaps = 10/321 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLA-----ENDRFSPASAPLALAIAPTRELAVQ 89
           L+ +D++V+AQTG+GKT  F L +   L       ++ R  P   P  L + PTRELA Q
Sbjct: 2   LQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQ-PRVLVLTPTRELAAQ 60

Query: 90  VGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNIS 147
           V    + +YA+   +V+ CI GGV ++ + + +  G  ++V  PGRL D + G+G ++++
Sbjct: 61  VHDSFK-VYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLD-LAGQGKVDLA 118

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
           H++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSAT S  IT LA    ++  R+
Sbjct: 119 HVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLQNPERI 178

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
            +   N     I+ R   +  S +   + +++     +  +VF  T+   +R  + L + 
Sbjct: 179 EVTPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQ 238

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
                A+ G  SQ  R+ AL   +    RV +ATD+AARG+D+  L  V++ EL +  E+
Sbjct: 239 GLTAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEED 298

Query: 328 LLHRSGRTGRAGRKGMSVFVI 348
            +HR GRTGRAGR G ++ ++
Sbjct: 299 YVHRIGRTGRAGRSGEAISLV 319


>gi|260820656|ref|XP_002605650.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
 gi|229290985|gb|EEN61660.1| hypothetical protein BRAFLDRAFT_232791 [Branchiostoma floridae]
          Length = 449

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 197/356 (55%), Gaps = 20/356 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E G+ ++T VQ A +   +  KDV   A TGSGKT+AF + +   L    +     
Sbjct: 18  DTLKELGFQHMTPVQAACIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILQRRTETLRKH 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNGAHIVVG 130
               AL I PTRELA+Q+   +     +   +  + +  GG  V   ++  +NGA+I+V 
Sbjct: 78  EVG-ALIITPTRELALQIDEVISAFTKRLPQLSQLLLIGGGNPVADIKKYQENGANIIVC 136

Query: 131 TPGRLCDHIRGK--GLNIS-HLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           TPGRL D +R K  GLN++ HLK++   VLDEAD +LD+GF   I  IL   PK+RR  +
Sbjct: 137 TPGRLEDILRRKEDGLNLAGHLKSLEVLVLDEADRLLDMGFEMSINTILSYLPKQRRTGL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVN 237
           FSAT +  +  L +   ++ VR+ +  +N       R  + +D   ++    ++ N +V 
Sbjct: 197 FSATQTKEVEALVRAGLRNPVRITVKEKNVAENVQQRTPASLDNLYMMCRSDEKFNHLVA 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
            LR HG +  +VF ST A V  F+  L E L   +V+++ G++ +Q+R+      R   +
Sbjct: 257 FLRSHGNEKHMVFFSTCAGVDYFSSALRELLKNTRVMSIHGKM-KQKRNKIFAQFRQAES 315

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
            V + TDV ARG+D+P++  V+  +  SN    +HRSGRT R GR+G + VF++P+
Sbjct: 316 GVLVCTDVMARGVDIPEVNWVLQFDPPSNASAFVHRSGRTARMGREGSAVVFLLPE 371


>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
 gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
          Length = 527

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 190/384 (49%), Gaps = 42/384 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  KD + +AQTGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI---- 189
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    P  R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNLFFSATMKDFM 195

Query: 190 -SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
              +I  ++K+  + +   N+A+ +     +D R +L A  DRD  ++  LR +  +N  
Sbjct: 196 KESSIFPISKDCIEWSQDSNVATVD----TLDQRYLLCADYDRDMVLIESLRKYREENEN 251

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+      +  L       V L G + Q+ER  AL   +    R  IATDVA
Sbjct: 252 SNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTLIATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM---------- 352
           +RG+D+P ++LVI+  L   P+  +HR GRT RAGRKGM  S+F  P+++          
Sbjct: 312 SRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGAIETEI 371

Query: 353 ----------QRRAERLFREANVS 366
                     QR  ER+F + NV+
Sbjct: 372 NTKLTEHPIDQRMVERIFMQVNVT 395


>gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 623

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 199/387 (51%), Gaps = 52/387 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQ----------EAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           P++I +A+ + G+   T+VQ           +  +   R  D++VS+QTGSGKT AF L 
Sbjct: 61  PELI-QAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGKTAAFLLP 119

Query: 58  LASTLLAE------------------------------------NDR-FSPASAPLALAI 80
           +  TLL +                                    N R F+PA AP AL +
Sbjct: 120 VLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRHFAPA-APGALIV 178

Query: 81  APTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
            PTRELA QV  + ++ +    G+ VA  +GG+    +   LQN A++VV TPGRL D  
Sbjct: 179 CPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQ 237

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA  
Sbjct: 238 RSMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFSATFAPRIQQLASR 297

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
             ++  R+ I S   +H++I  +      +     +++  LR      A+VF ST+    
Sbjct: 298 VMREPQRLQIDSPQEKHANISQKLFWADNAQHKRKLLDHWLRDTTINQALVFASTQIECD 357

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V +
Sbjct: 358 GLANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTVTHVFN 417

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G++V
Sbjct: 418 FGLPMKAEDYTHRIGRTGRAGRDGIAV 444


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 22/392 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L S++L+ 
Sbjct: 137 NTPMALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSN 196

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               +      S+P AL +APTREL++Q+  E      +TG+   V  GG     +  +L
Sbjct: 197 VTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHEL 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
             G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+        
Sbjct: 257 SRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMP 316

Query: 177 -PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ L++SAT    I  LA+ +      + +        +I      V  +D+   +
Sbjct: 317 PPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHL 376

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + IL  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+M +    
Sbjct: 377 LRILHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASC 436

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G            R
Sbjct: 437 QVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVG------------R 484

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           A   F E N ++V +  P +    +   Q+I+
Sbjct: 485 AISFFNEKNRNIVDDLVPLLNETHQNVLQQIM 516


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 187/358 (52%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 144 FPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 202

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 203 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 262 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 321

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++  +  
Sbjct: 322 SATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           + A   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +AT
Sbjct: 382 NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVAT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 442 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 499


>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 562

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 177/340 (52%), Gaps = 12/340 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q   +   ++  D+L +AQTG+GKT  F L L         R  PA 
Sbjct: 18  AVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLLH-------RLGPAP 70

Query: 74  A-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTRELA QV   +            V  GGV ++ +   L+    I+
Sbjct: 71  THLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAALRKPLDIL 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT
Sbjct: 131 VATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPAKRQNLLFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     +   V +A  N  +  ++ +  LV    +   + +++        +
Sbjct: 191 FSDEIKVLADRLLNNPQLVEVARRNTANELVEQKVHLVDRDKKTELLTHLISQGDWHQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    +V +ATD+AARG+
Sbjct: 251 VFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVLVATDIAARGL 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ EL + PE+ +HR GRTGRAG +G +V ++
Sbjct: 311 DIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLV 350


>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
 gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
          Length = 527

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/384 (33%), Positives = 190/384 (49%), Gaps = 42/384 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  KD + +AQTGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI---- 189
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    P  R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNLFFSATMKDFM 195

Query: 190 -SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
              +I  ++K+  + +   N+A+ +     +D R +L A  DRD  ++  LR +  +N  
Sbjct: 196 KESSIFPISKDCIEWSQDSNVATVD----TLDQRYLLCADYDRDMVLIESLRKYREENEN 251

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+      +  L       V L G + Q+ER  AL   +    R  IATDVA
Sbjct: 252 SNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTLIATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM---------- 352
           +RG+D+P ++LVI+  L   P+  +HR GRT RAGRKGM  S+F  P+++          
Sbjct: 312 SRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLGAIETEI 371

Query: 353 ----------QRRAERLFREANVS 366
                     QR  ER+F + NV+
Sbjct: 372 NTKLTEHPIDQRMVERIFMQVNVT 395


>gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320]
 gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 451

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 184/346 (53%), Gaps = 22/346 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+GY   T++Q   +   +  +D+L SA TG+GKT AF L     LL    + S   
Sbjct: 18  ALEEKGYQRPTAIQAEAIPAAMEGRDILGSAPTGTGKTAAFLLPAIQHLLDYPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  + + L A T + +A   GGV+             IVV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQAKELCAHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVEMLILDEADRMLDMGFANDIETIAGETRWRKQTLLFSATLEGNA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQ---------HSD-IDYRAVLVALSDRDNAIVNILRYH 242
           +   A+    + V +N     R+         H+D +D++  L+A         ++L+  
Sbjct: 196 VIDFAQRILNEPVELNADPSRRERKKIQQFYYHADNLDHKTALLA---------HLLKQE 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K +IVF   R  V      L +   +   L GE++Q +R+ A++ +  G+  V IATD
Sbjct: 247 EVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMAQTQRNEAIKRVESGKMHVLIATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA+RG+DL D+  V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 307 VASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLV 352


>gi|66812114|ref|XP_640236.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
 gi|74897113|sp|Q54S03|DDX18_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx18; AltName:
           Full=DEAD box protein 18
 gi|60468220|gb|EAL66230.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
          Length = 602

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 204/361 (56%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P  +   +++ E G+  +T +Q   + P L  KD+L +A+TGSGKT+AF +     
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+  N  F P +    + I+PTRELA+Q   V REL   + +T  +V   IGG S   E 
Sbjct: 181 LVKSN--FKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIV---IGGASKKPEE 235

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L+ G +++V TPGRL DH++  KG    +LK +++DEAD +L++GF +++  I+   P
Sbjct: 236 ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVP 295

Query: 178 KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNA 234
           K R+ ++FSAT +  +  +AK +     V V +  E R+ S ++   +  +V  S+R   
Sbjct: 296 KTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDE-REISTVEGLEQGYVVCPSERRFL 354

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++   L+ + +K  IVF S+  +V    ++L      V+ L G   QQ+R+N      + 
Sbjct: 355 LLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNA 414

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQN 351
              + I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG + +F++P+ 
Sbjct: 415 EKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKE 474

Query: 352 M 352
           +
Sbjct: 475 L 475


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 178/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +   N          AL
Sbjct: 58  GFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQ------AL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     +    CIGG SV  + R L+ G HIV GTPGR+CD 
Sbjct: 112 ILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 172 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITN 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 232 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 291

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LVI
Sbjct: 292 DWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVI 351

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 352 NYDLPNNRELYIHRIGRSGRFGRKGVAI 379


>gi|170088270|ref|XP_001875358.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650558|gb|EDR14799.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 691

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 190/373 (50%), Gaps = 40/373 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IPQ I + + + GY + + +Q   +   L  +D++  A+TGSGKT AF + + S +    
Sbjct: 271 IPQPILDCIEQIGYKDPSPIQRQAIPIGLLNRDIIGIAETGSGKTAAFVIPMLSFISG-- 328

Query: 67  DRFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               P +       P AL +APTRELA Q+  E     +  G      +GGVSV  ++ +
Sbjct: 329 --LPPFTDDIRHLGPYALIMAPTRELAQQIESEARKFASPLGFKCVSIVGGVSVEEQQFN 386

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--- 177
           L+ GA I++ TPGRL D I    L +S  + VV+DEAD M+ LGF  D+ FILD+ P   
Sbjct: 387 LREGAEIIIATPGRLKDVIERHVLVLSQCRYVVMDEADRMVHLGFEADLTFILDALPSET 446

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R   +FSAT+  A+  LA+ Y K    + I    R  
Sbjct: 447 MQGEDLGEQMDVDGETMIKKGRTRVTTLFSATMPAAVERLARKYLKKPAVITIGEAGRAV 506

Query: 217 SDIDYRAVLVALSDRDN----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
             ++ R   V+  ++       I+N  +Y  A   IVF + + +     K L+   +   
Sbjct: 507 DTVEQRVEFVSGDEKKKQKLLEILNSGQY--ASPIIVFVNQKKTADMVAKDLSRAGWNAA 564

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L    +Q++R  +LQ +R+G + V +ATD+A RGID+ D+ LVI+ ++++  E  +HR 
Sbjct: 565 TLHSGKNQEQREASLQSLRNGESDVLVATDLAGRGIDVQDVSLVINFQMANTIEAYVHRI 624

Query: 333 GRTGRAGRKGMSV 345
           GRTGRAG+ G ++
Sbjct: 625 GRTGRAGKLGTAI 637


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 220 NFPQYVMDVLMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 278

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 279 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 337

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 338 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 397

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 398 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 457

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 458 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 517

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 518 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 577

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 578 KVLEEANQAI 587


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 203/373 (54%), Gaps = 13/373 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++ Y + T +Q+  +   L  KDVL  AQTG+GKT  F L L   LL++  R    +
Sbjct: 15  AIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLLQ-LLSKRPRTKGKT 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +  AL + PTRELA QV   +        +  AV  GGV+++ +   L+ G  I+V TPG
Sbjct: 74  SVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIAKLRRGIDILVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + L++  ++ +VLDEAD MLD+GF  DI  IL   P +R+ L+F AT S  I
Sbjct: 134 RLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVRRQNLLFFATFSDEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---DNAIVNILRYHGAKNAIVF 250
            TLA++  +  V   +    R+++  +  A L+   DR      +  ++  +  +  +VF
Sbjct: 194 KTLAEDLLRSPV---LIETERRNTPAESVAQLIHPVDRVRKRELLSFLIGSNNWRQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R T+ L     +  A+    SQ  R+ +L   + G  RV +ATD+AARG+D+
Sbjct: 251 TRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRVLVATDIAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV-- 368
             L  V++ EL S   + +HR GRTGRA R G ++ ++  + + + + + R  N ++   
Sbjct: 311 DHLPHVVNFELPSVSRDYVHRIGRTGRAERSGTAISLVSIDEREQLKEIERLLNRAIPRE 370

Query: 369 ----WEPAPSVEA 377
               +EP PS+++
Sbjct: 371 IIKGYEPDPSIKS 383


>gi|224046936|ref|XP_002196956.1| PREDICTED: putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 341

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 171/306 (55%), Gaps = 7/306 (2%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
            + +Q+G+GKT  F +++   L  +           AL +APTRELAVQ+ + L  L   
Sbjct: 9   FLRSQSGTGKTATFSISVLQCLDIQ------VRETQALILAPTRELAVQIQKGLLALGDY 62

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
             V    CIGG +V  + R L  G H+V GTPGR+ D IR + L    +K +VLDEADEM
Sbjct: 63  MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 122

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           L+ GF++ I  +    P   ++++ SAT+   I  +   +  D +R+ +  +      I 
Sbjct: 123 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIK 182

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
              V V   + + + + ++        A++FC+T+  V   T+ + E  F V ++ G++ 
Sbjct: 183 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP 242

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR G
Sbjct: 243 QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYG 302

Query: 340 RKGMSV 345
           RKG+++
Sbjct: 303 RKGVAI 308


>gi|54024485|ref|YP_118727.1| putative RNA helicase [Nocardia farcinica IFM 10152]
 gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
          Length = 518

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/376 (33%), Positives = 187/376 (49%), Gaps = 6/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+ +AL   G      +Q A +   L  KDVL    TGSGKT+AFGL +   L   
Sbjct: 36  GLPAVLVQALRRNGIDAPFPIQAATVPDALAGKDVLGRGPTGSGKTLAFGLPMLVRL--A 93

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  +P   P  L + PTRELA Q+ R L+      G+ VA  +GG  + R+   L  G 
Sbjct: 94  GNAAAPRR-PRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLARGV 152

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D I      +  +    LDEAD M D+GF   +  +LD +P   + L+F
Sbjct: 153 DLLIATPGRLSDLIAQGAAALDDVSITALDEADHMADMGFLPQVTRLLDRTPADGQRLLF 212

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K Y ++ V  + A  +   + + +  + V  +D+   I  I    G  
Sbjct: 213 SATLDGEVDKLVKRYLRNPVTHSTAPPSASVATMSHHLLYVRKADKRAVIAEIAAREGLT 272

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  K L        AL G  +Q  R+  L    DG   V + TDVAA
Sbjct: 273 --ILFVRTKHGADRLAKQLRAAGIAAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAA 330

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  + LV+HA+  + P+  LHR+GRT RAG  G+ V ++ ++ +   E++ R+A V
Sbjct: 331 RGIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERADVEKMTRKAGV 390

Query: 366 SVVW-EPAPSVEAIRE 380
            VV     P   A+RE
Sbjct: 391 DVVGVNVTPGHPALRE 406


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 192/362 (53%), Gaps = 19/362 (5%)

Query: 1   MKIFENIPQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           +++FE++   +GE L       GY   T VQ+  +     ++D++  AQTGSGKT AF +
Sbjct: 191 IELFEDVD--LGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLI 248

Query: 57  ALASTLLAENDRFSPA--------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + S +  E     P           P+ L +APTRELAVQ+  E      ++     V 
Sbjct: 249 PILSRIYMEGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVV 308

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R+L    H++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   
Sbjct: 309 YGGADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQ 368

Query: 169 IEFIL--DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I+  DS PK   R+ LMFSAT    I  LA+++ ++ + + +        +I  + V
Sbjct: 369 IRRIVDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVV 428

Query: 225 LVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + ++++L   G +   +VF  T+         LA+  +   ++ G+ SQ+ER
Sbjct: 429 WVDEFDKRSFLLDLLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQRER 488

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   + +AT VAARG+D+P+++ VI+ +L ++ E  +HR GRTGR G  G+
Sbjct: 489 EEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGL 548

Query: 344 SV 345
           + 
Sbjct: 549 AT 550


>gi|254360747|ref|ZP_04976895.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
 gi|153091317|gb|EDN73291.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
          Length = 411

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 185/334 (55%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q       L+ KD+   AQTG+GKT+AF +A  + LL  N+  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTFPITLKGKDIAGQAQTGTGKTLAFLIATFNHLL-NNEIETSKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+G + E     + + +A+  GG    ++ ++++ G  I+VGT G
Sbjct: 81  QPRALILAPTRELAVQIGADAELFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++  +PK  +R  L+FSAT+S 
Sbjct: 141 RVIDYVKQGIINLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSA 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    +    I       +  D+   ++ +L     +  ++F 
Sbjct: 201 KVRELAYEDMDNAEYIEIEPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L+    +V  L+G++ Q++R + L     G   + + TDVAARG+ +P
Sbjct: 261 NTKHKCEEIWQYLSADGHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 DVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSI 354


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 183/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P ++ +DV+V +Q G+GKT  F +A A  ++ +N R      P  +
Sbjct: 42  GFDKPSAVQQRAIKPIIKGRDVIVQSQAGTGKTGVFTIA-ALQIVDKNLR-----EPQVI 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     ++V  CIGG S+  +   L+ G  I+ GTPGR+ D 
Sbjct: 96  VLSPTRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDINRLEKGVQIISGTPGRIYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K +VLDEAD+ML +GF++ +  I    P K + ++ SAT+   I  +  
Sbjct: 156 IQRRHLKTRNVKMLVLDEADQMLSMGFKEQVYDIYRYLPHKNQNVVVSATLPQEILEMTN 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D ++  +  +      I    +LV   + +   + ++        A++FC+T  +V
Sbjct: 216 KFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLCDLYNTITITQAVIFCNTIKAV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +  + E  F + ++ GEL+Q+ER   +Q  R+G  RV +ATD+  RG+D+  + +VI
Sbjct: 276 KWLSGKMREQNFSLCSIHGELNQKERDKIMQDFRNGEYRVLVATDIWGRGLDVQQVSVVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 336 NYDLPTNRELYIHRIGRSGRFGRKGVAI 363


>gi|312196292|ref|YP_004016353.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311227628|gb|ADP80483.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 530

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 184/373 (49%), Gaps = 11/373 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +P  +  AL+ERG      VQ A L   L  ++VL  A+TGSGKT+ FGL + + 
Sbjct: 79  FEAAGLPARLVRALAERGISTPFPVQAATLPDVLAGENVLGRAKTGSGKTLGFGLPMLAR 138

Query: 62  LLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L        PA+   P  L + PTRELA QV   L+ L    G+ +    GG S+ R+  
Sbjct: 139 LAGRG----PATPLRPRGLILVPTRELAQQVSDALDPLSRSVGLWLRPVYGGTSISRQIS 194

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HIVV TPGRL D +      +  ++  VLDEAD M DLGF   +  ILD++   
Sbjct: 195 MMRRGVHIVVATPGRLLDLVERGACQLDEVEVTVLDEADYMCDLGFLPAVRSILDATSPA 254

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT+   +  L + Y  + V V + SEN Q + +   A  +  SDR + +  + 
Sbjct: 255 AQRLMFSATLDREVEVLVREYLPEPVLVAVDSENSQVTTLRRHA--LEASDRYSQLEVVT 312

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G +   +VF  T+         L +       L G L Q  R+ AL    DG  RV 
Sbjct: 313 ALTGGQGRTLVFVRTQRDADHVAADLTKAGVPAEPLHGGLPQGARTRALAGFADGTRRVL 372

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGI + D+ LV+H     + +   HR GRT RAG +G  V V     + +   
Sbjct: 373 VATDVAARGIHVDDVRLVVHMGPPEDSKTYQHRGGRTARAGAEGADVLVTLAADRGKVRA 432

Query: 359 LFREANVSVVWEP 371
           + R A V     P
Sbjct: 433 MLRTAGVDTQITP 445


>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 443

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 191/341 (56%), Gaps = 6/341 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    + N T +Q+  +   +  KD+L S++TGSGKT+AF L +    L +N  FS A  
Sbjct: 16  LKHFDFKNATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPILHKSL-KNKSFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA QV  EL+ +        ++ +GG + + + + L+     +V TPGR
Sbjct: 74  PRALILAPTRELAKQVYGELKSMLGGLSYDASLIVGGENFNDQVKALRRYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPKKRRMLMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I + +  ++R+ LMFSAT+  A 
Sbjct: 134 LADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHMAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFC 251
           +  +A        R+ I   + +H DI  +  L   L  +++ +   ++    K  I+F 
Sbjct: 194 VNDIALEMLDAPKRIAIDIGSAEHKDISQKFYLCDHLDHKESLLERAIQEANYKQLIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R T+ L     + +ALSG L+Q +R+  +        ++ + TD+A+RG+D+ 
Sbjct: 254 ATRVDTERLTEKLNSDGLKAIALSGSLTQTQRNTIMSQFERAVFKILVTTDIASRGLDIA 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ++  VI+ ++  + E  +HR GRTGRAG KG ++ FV P++
Sbjct: 314 NVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISFVGPKD 354


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 190/353 (53%), Gaps = 7/353 (1%)

Query: 14   ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
             L    +   T +Q   L   +  +D++  A+TGSGKT+AF + L   L       +P  
Sbjct: 796  CLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHL-EHQAPLNPGD 854

Query: 74   APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
             P+AL +APTRELA+Q+ +E + L  +     AVC+ GG  +  +  +L+ GA I+V TP
Sbjct: 855  GPIALLLAPTRELALQIFKETKKL-CQAADARAVCVYGGTGISEQIAELKRGAEIIVCTP 913

Query: 133  GRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            GR+ D +   G    N+     VVLDEAD M DLGF   +  I+++    R+ LMFSAT 
Sbjct: 914  GRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTLMFSATF 973

Query: 190  SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
               +  LA+      + + I   +   SD++  A +++  ++   ++ +L  Y    + +
Sbjct: 974  PRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVL 1033

Query: 249  VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            VF   + S     +VL ++ +  ++L G + Q +R + +   + G  R+ IAT VAARG+
Sbjct: 1034 VFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGL 1093

Query: 309  DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+ DL LVI+ +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R
Sbjct: 1094 DVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVR 1146


>gi|225454506|ref|XP_002277120.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 851

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L      + S  ++ + 
Sbjct: 396 KAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQ 455

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           +  P    + L I PTRELA Q   E   L      + V V IGG  +  E++ +Q N  
Sbjct: 456 KRPPI---VVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPC 512

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+ 
Sbjct: 513 QILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 572

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSAT+   +  +     ++D   +N   E  +  HS +    ++  L      +  +L
Sbjct: 573 LLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALL 632

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H A +     +VFC+T         +L E    V  +     Q  R+      R  + 
Sbjct: 633 KDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKG 692

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++
Sbjct: 693 LILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLL 745


>gi|147820620|emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]
          Length = 863

 Score =  186 bits (471), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 122/353 (34%), Positives = 184/353 (52%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LASTLLAEND 67
           +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L      + S  ++ + 
Sbjct: 408 KAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSPPISRDQ 467

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           +  P    + L I PTRELA Q   E   L      + V V IGG  +  E++ +Q N  
Sbjct: 468 KRPPI---VVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQANPC 524

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+ 
Sbjct: 525 QILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQT 584

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSAT+   +  +     ++D   +N   E  +  HS +    ++  L      +  +L
Sbjct: 585 LLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLYALL 644

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H A +     +VFC+T         +L E    V  +     Q  R+      R  + 
Sbjct: 645 KDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRKSKG 704

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++
Sbjct: 705 LILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLL 757


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 191/368 (51%), Gaps = 8/368 (2%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + P  + E +   G+   T +Q       L  +D++  + TGSGKT+AF L     + A+
Sbjct: 759  SFPAYVLEEVMRLGFQKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQ 818

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 P   P+ L IAPTRELAVQ+ +E     A + +      GGV  + +  +L+ G 
Sbjct: 819  -PHLEPGDGPIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQIMELRQGV 877

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             I + TPGR+ D +     N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+
Sbjct: 878  EICICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMW 937

Query: 186  SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
            SAT    I +LA ++  D ++V + S E   +  I+    ++    + NA+V  LR  Y 
Sbjct: 938  SATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVAHLRVIYD 997

Query: 243  GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            G +  I+FC T+      ++ L    +   A+ G  SQ+ER   L+  + G+ ++ +ATD
Sbjct: 998  GGR-IILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKTQILVATD 1056

Query: 303  VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
            VA+RG+D+ D+  VI+ ++  N E+ +HR GRT RAG KG ++     +  R A  L R 
Sbjct: 1057 VASRGLDIKDIRYVINFDMPKNVEDYIHRIGRTARAGSKGTAISFFTSDNGRLASPLIRV 1116

Query: 362  --EANVSV 367
              EAN  V
Sbjct: 1117 LEEANQQV 1124


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 182/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G+   +++Q+  L P +R +DV+  AQ+G+GKT   G+A+   +       +      
Sbjct: 45  EYGFERPSAIQQRALIPIMRGRDVIAQAQSGTGKTSMIGIAVNQLI------DTSVREVQ 98

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q  + +  L +   V    CIGG S   + R L++G H+V GTPGR+ 
Sbjct: 99  ALVLSPTRELADQTAKVVLTLGSHMNVQAHTCIGGKSFSEDIRKLEHGVHVVSGTPGRVY 158

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D ++ +     H+K +VLDE+DEML  GF++ I       P   ++++ SAT+   I  +
Sbjct: 159 DMLKRRTFRTRHVKILVLDESDEMLSRGFKEQIIDCYRYLPPDLQVVLVSATLPHEILEM 218

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 219 TNKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 276

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ +    F V ++ GE+ Q+ER   ++  R+G+ RV I TDV ARG+D+  +
Sbjct: 277 KRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFREGQTRVLITTDVWARGLDVQQV 336

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L ++ E  +HR GR+GR GRKG+++
Sbjct: 337 SLVINYDLPNSRELYIHRIGRSGRFGRKGVAI 368


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 188/364 (51%), Gaps = 16/364 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           +   T VQ+  +    R +D++  AQTGSGKT  F   + S          P SA     
Sbjct: 180 FTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSESFKNGPSPMPESARKSFV 239

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL +APTRELA Q+  E +    ++ V   V  GG  +  + RDL  G  ++V 
Sbjct: 240 KKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVA 299

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFS 186
           TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I+D        +R+ LMFS
Sbjct: 300 TPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCDMPPVGERQTLMFS 359

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+++  D + +++        +I  R + V   D+ + ++++L       
Sbjct: 360 ATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKSTLLDLLSASNDGL 419

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+      T  L    F+  A+ G+ +Q ER  AL   ++G A + +AT VAAR
Sbjct: 420 TLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNGNANLLVATAVAAR 479

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           G+D+P++  V++ +L S+ ++ +HR GRTGRAG  G++        +N+ +    L  EA
Sbjct: 480 GLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNRNIVKGMYELLAEA 539

Query: 364 NVSV 367
           N  +
Sbjct: 540 NQEI 543


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 475

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/411 (29%), Positives = 207/411 (50%), Gaps = 27/411 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +Q+  +   L   DVL  AQTG+GKT A+ L +   +     +++   
Sbjct: 18  AVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPILMKV-----KYAQGK 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTREL +Q+ + +  L   T +      GG+    +   L+NG  I+V TPG
Sbjct: 73  NPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQIETLRNGVDIIVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D  R   +    ++ +VLDEAD+M+D+GF   I  IL+  P KR+ L+FSAT    +
Sbjct: 133 RFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPTKRQNLLFSATFGGRV 192

Query: 194 TTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             L+  + +  ++V +   AS     S + Y A       + N +  ++R    +  I+F
Sbjct: 193 ERLSSEFLEAPIKVEVTPQASTADMVSQVIYEA--PNFRTKINMLDYLMRQEDFQRVIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQ---VVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
             T+ +     K L+  + +   +  +     Q  R NA+   ++G  +V ++TDVAARG
Sbjct: 251 ARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGNIQVLVSTDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ ++  VI+ +L    E+ +HR GRTGRA R G ++  + +  +   +++ R    ++
Sbjct: 311 IDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEEYHVQKIERIIKATI 370

Query: 368 VWEPAPS------------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
             +P P+               +RE D QR  +DP FL +    EKK+ ++
Sbjct: 371 PRQPLPAGVVVAETPFEEEQAMLREIDEQRRKEDPTFLGAFH--EKKITNM 419


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 197/362 (54%), Gaps = 9/362 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELNLHDSVLEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHR 116
             L     +  P      + ++PTRELA Q+ +++E   +  + + V +     G++  +
Sbjct: 61  DKL--SEGKHIPDKVN-CIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H++   +++S +K  +LDEAD MLD+GF DDI  I    
Sbjct: 118 QKRGLTMGAEVVIATPGRLLSHLKLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA+N   +   + +A  ++    I   A +     + N I 
Sbjct: 178 PKERQTIMFSATMPDKIQKLAQNILHNPEEIKLAV-SKPAEKILQAAYVCYEGQKLNIIN 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++     ++ ++VF S++A V    + L +   +V  +  +L+Q+ R   LQ  + G   
Sbjct: 237 DLFSKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           + + TD+ ARGID+ D+ LVI+ ++ ++ E+ +HR GRT RA   G+++ FV  ++ Q  
Sbjct: 297 ILVGTDIIARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGVAITFVNTKDQQNF 356

Query: 356 AE 357
            E
Sbjct: 357 LE 358


>gi|297806935|ref|XP_002871351.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317188|gb|EFH47610.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 794

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 187/354 (52%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAEND 67
           +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L      + S   + ++
Sbjct: 339 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDN 398

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           R  P    + L + PTRELA Q   E   L      + V V IGG  +  E+R +Q N  
Sbjct: 399 RQPPI---IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPC 455

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+ 
Sbjct: 456 QILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQT 515

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT+   +  +     ++D   +N   E     H  +    ++ +L    + +  +L
Sbjct: 516 FLFSATVPEEVRQICHVALKRDHEFINCVQEGTGETHQKVTQMYMIASLDRHFSLLYVLL 575

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           + H A N     I+FC+T A V+R    L   L   V  +     Q  R+      R  +
Sbjct: 576 KEHIADNVDYKVIIFCTT-AMVTRLVADLLSQLNLNVREIHSRKPQSYRTRVSDEFRKSK 634

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 635 AIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 688


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 188/351 (53%), Gaps = 12/351 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +PQ + EAL  +   + +++Q+AI+       DV+  A+TGSGKT+A+ L     + 
Sbjct: 106 FDFLPQNLQEALKAKSITSPSAIQQAIIPLIFEGHDVIAIAETGSGKTLAYALPGIMHMQ 165

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+       + P  L +APTRELA Q+  + + L+ KT  +     GG+    +      
Sbjct: 166 AQ----PQITGPRILVLAPTRELAQQIQTQYD-LFVKTCCL----FGGIQKPLQYFAKPQ 216

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +++ TPGRL D I+  GL +  +  VVLDEAD MLD+GF D I  +L    K R+ L
Sbjct: 217 TPKVIIATPGRLLDFIKD-GLPLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQTL 275

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            FSAT    +  LA N   +D V + +       +    ++++++  ++   ++      
Sbjct: 276 FFSATWPKEVQRLANNLCNEDPVFLQLGERGLSVNKNITQSLIISGGNKFEQLIEYFNQI 335

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VFC  +    +    L++H      L G+L Q +R   +Q  RDG A+  I T+
Sbjct: 336 KDKKVLVFCQKKIDTQKLEYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLITTN 395

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG ++ F+ P ++
Sbjct: 396 LASRGLDVSDVDIVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIEPNDL 446


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 174/329 (52%), Gaps = 1/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ + A++  AL 
Sbjct: 21  YTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVA-ANSVRALV 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGRL D  
Sbjct: 80  LVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRLLDLF 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   +    ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I  LA  
Sbjct: 140 RQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKRQTLLFSATFSDQIRMLAGL 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              D + + ++  N   S +    V V    + +   ++LR    K  +VF  TR  V +
Sbjct: 200 ALNDPLSIEVSPRNAAASTVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTRNGVDQ 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL LV++ 
Sbjct: 260 LVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLPLVVNL 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 320 DLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 193/383 (50%), Gaps = 8/383 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L +   L  +     P S+
Sbjct: 56  LTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQHLFQQQHANKPLSS 115

Query: 75  P----LALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                  L + PTRELA QV   ++ +     G +  V + GGVS + +   L+ G  I+
Sbjct: 116 KGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGTDIL 175

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    + +  +K +VLDEAD ML LGF D++  +LD  PK ++ L+FSAT
Sbjct: 176 VATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLDLLPKNKQTLLFSAT 235

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  L +    D V + + S +   S +  R   V   ++   + ++++ H  + A+
Sbjct: 236 FPEQVQALTQELLNDPVEIQLQSADA--STLVQRVFTVNKGEKTALLAHLIKQHEWRQAL 293

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F + + S       L++         G+  Q  R+  L+  + G   V IATD+AARG+
Sbjct: 294 IFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAFKSGEIEVLIATDIAARGL 353

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I  +     + + ++  + + 
Sbjct: 354 DIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKKNKIRLE 413

Query: 369 WEPAPSVEAIRERDAQRILQDPL 391
            E     EA    +A  I   P+
Sbjct: 414 REQVEGFEADEVNEAFLIANKPM 436


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSPA 72
           ++E GY   T +Q  ++   L  +DV+  A TG+GKT AF L +   L ++  +D+    
Sbjct: 23  VTESGYQQPTPIQGQVIPNVLAGRDVIAGANTGAGKTAAFALPILQELYSQKQSDQTHGR 82

Query: 73  SAPL--ALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTRELA QV   +    A     +  A   GGVS + +  +L++GA I+
Sbjct: 83  RGNFVSALVLVPTRELARQVADSITSYSAHFNGAIKTAAVYGGVSTNAQMLELRHGADIL 142

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    + +  +K +VLDEAD ML LGF +++  +L+  PK+++ L+FSAT
Sbjct: 143 VATPGRLLDLVDHNAIKLDRVKTLVLDEADRMLSLGFTEELTNVLNQLPKQKQTLLFSAT 202

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               + +L ++   + V + I S++   S I+     V   ++   + ++++ +  + A+
Sbjct: 203 FPEQVQSLTQDLLNNPVEIQIQSDDA--STIEQHVYTVNKGEKTAVLAHLIKQNQWRQAL 260

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + + S     + L +   +     G+ +Q  R+  ++  + G+  V IATD+AARG+
Sbjct: 261 VFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDFKSGKIEVLIATDIAARGL 320

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 DIEKLPVVINVDLPRSPSDYMHRIGRSGRAGEAGLAISLI 360


>gi|229893773|gb|ACQ90244.1| DEAD-box RNA helicase [Glycine max]
          Length = 537

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 197/360 (54%), Gaps = 11/360 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPL 76
           +G+   + +Q       L  +D++  A TGSGKT+AFG+ A+   L     + S    PL
Sbjct: 135 KGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLGKRKGKSSKGRNPL 194

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L ++PTRELA Q+   +       GV      GG S   +   L++G  IV+GTPGR+ 
Sbjct: 195 GLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQISSLKSGIDIVIGTPGRIQ 254

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I      +  +  VVLDEAD MLD+GF   +  IL  +   R+M+MFSAT    +  L
Sbjct: 255 DLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHYL 314

Query: 197 AKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNIL-RYHGAKN--AIVF 250
           A+ +   + V+V + SE+   ++ D   ++  L DR  D  +V +L +YH ++    +VF
Sbjct: 315 AQEFMDPNPVKVVVGSEDLA-ANHDVMQIVEVLDDRSRDKRLVALLEKYHKSQRNRVLVF 373

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +    R   +L E  ++VV++ G+ +Q +R+ AL + ++    + IATDVAARG+D+
Sbjct: 374 VLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNASCPLMIATDVAARGLDI 433

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREANVSV 367
           PD+E+VI+       E+ +HR GRTGRAG+KG++  F + QN     E   + REA  +V
Sbjct: 434 PDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQTV 493


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 90  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 148

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 149 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 208 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 267

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 268 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 327

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 328 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 387

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 388 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 447

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 448 KVLEEANQAI 457


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/362 (30%), Positives = 194/362 (53%), Gaps = 17/362 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   +  +DV+  AQ+G+GKT  F + +   +  ++          +L
Sbjct: 42  GFEAPSAIQSRAITQIISGRDVIAQAQSGTGKTATFTIGMLQVIDFKSRELQ------SL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     +    C GG ++  + + L +G H+V GTPGR+ D 
Sbjct: 96  VLSPTRELAKQISQVVGNLGDYMNISAHACTGGKAMQTDTKKLTHGCHVVSGTPGRVLDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           I+ + LN  HLK ++LDEADE+L   LGF+  I  I    PK  ++++ SAT+S  I  +
Sbjct: 156 IKRRILNTRHLKMLILDEADELLSETLGFKQQIYDIFAKLPKSVQVVVVSATMSKDILEI 215

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCS 252
            K +  D V++ +  +      I    V V   DR+    + + ++         ++FC+
Sbjct: 216 TKKFMSDPVKILVKRDEISLEGIKQYHVNV---DREEWKFDTLCDLYDSLTITQCVIFCN 272

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   +  L +  F V ++ G++ Q++R   +   R G +RV I+TDV ARGID+  
Sbjct: 273 TKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFRSGTSRVLISTDVWARGIDVQQ 332

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LVI+ +L  N EN +HR GR+GR GRKG+++  I ++  +  + +  E + SV   P 
Sbjct: 333 VSLVINYDLPDNLENYIHRIGRSGRFGRKGVAINFITRDDAQGLKAI--EKHYSVKIRPM 390

Query: 373 PS 374
           P+
Sbjct: 391 PA 392


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 188/343 (54%), Gaps = 7/343 (2%)

Query: 24   TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
            T +Q   L   +  +D++  A+TGSGKT+AF + L   L       +P   P+AL +APT
Sbjct: 874  TPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHL-EHQAPLNPGDGPIALLLAPT 932

Query: 84   RELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
            RELA+Q+ +E + L  +     AVC+ GG  +  +  +L+ GA I+V TPGR+ D +   
Sbjct: 933  RELALQIFKETKKL-CQAADARAVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 991

Query: 143  G---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
            G    N+     VVLDEAD M DLGF   +  I+++    R+ LMFSAT    +  LA+ 
Sbjct: 992  GGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTLMFSATFPRQMEILARK 1051

Query: 200  YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVS 258
                 + + I   +   SD++  A +++  ++   ++ +L  Y    + +VF   + S  
Sbjct: 1052 VLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVLVFVEKQESAD 1111

Query: 259  RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
               +VL ++ +  ++L G + Q +R + +   + G  R+ IAT VAARG+D+ DL LVI+
Sbjct: 1112 ELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGLDVTDLLLVIN 1171

Query: 319  AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
             +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R
Sbjct: 1172 YDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVR 1214


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 198/376 (52%), Gaps = 14/376 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + + ++GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 124 IQFFEEGNFPDYVMQGIKKQGYSEPTPIQAQGWPIAMSGKNMVGIAQTGSGKTLAYILP- 182

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +      +    P+AL +APTRELA Q+ + +   +     V   CI GG     +
Sbjct: 183 AIVHINSQQPLNRGDGPIALILAPTRELAQQI-QTVASDFGSLSYVRNTCIFGGAPKGGQ 241

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 242 ARDLERGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 301

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+ Y  D  ++NI S +   + +I     +    +++  + 
Sbjct: 302 PDRQVLMWSATWPKEVRMLAEEYLVDYTQLNIGSLQLAANHNILQIIDVCQEQEKETKLG 361

Query: 237 NILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +L+  G  N      I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R
Sbjct: 362 TLLQEIGNVNDDGGKTIIFVETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYVLREFR 421

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           + +  + +ATDVAARG+D+ D+  VI+ +  S+ E+ +HR GRTGR+   G S  F  PQ
Sbjct: 422 NKKGSILVATDVAARGLDVDDVRYVINFDYPSSSEDYIHRIGRTGRSQSSGTSYAFFTPQ 481

Query: 351 NMQRRAE--RLFREAN 364
           N ++  +   + REAN
Sbjct: 482 NGRQAKDLINVLREAN 497


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 401 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 460

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 461 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 520

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 521 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 580

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 581 DTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 640

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 641 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 700

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 701 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 760

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 761 GKTGCAISFVTKD 773


>gi|194856991|ref|XP_001968873.1| GG25110 [Drosophila erecta]
 gi|190660740|gb|EDV57932.1| GG25110 [Drosophila erecta]
          Length = 389

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 177/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 35  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 89  ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 149 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 209 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 269 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 329 NYDLPSNRENYIH 341


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ + + ++++ + + T +Q       L  KD++  AQTGSGKT+++ L  A   +  
Sbjct: 102 NFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSY-LLPAIVHINH 160

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 161 QPFLEHGDGPICLVLAPTRELAQQV-QQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERG 219

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 220 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 279

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ K+ +++N+ A +   + +I     +    ++++ ++ +L    
Sbjct: 280 WSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIM 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+      T+ +    +  + + G+ +QQER   L   + G+A + IA
Sbjct: 340 SEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +  F  P NM++  +  
Sbjct: 400 TDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLV 459

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 460 SVLREANQAI 469


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 190/353 (53%), Gaps = 7/353 (1%)

Query: 14   ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
             L    +   T +Q   L   +  +D++  A+TGSGKT+AF + L   L       +P  
Sbjct: 820  CLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHL-EHQAPLNPGD 878

Query: 74   APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
             P+AL +APTRELA+Q+ +E + L  +     AVC+ GG  +  +  +L+ GA I+V TP
Sbjct: 879  GPIALLLAPTRELALQIFKETKKL-CQAADARAVCVYGGTGISEQIAELKRGAEIIVCTP 937

Query: 133  GRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            GR+ D +   G    N+     VVLDEAD M DLGF   +  I+++    R+ LMFSAT 
Sbjct: 938  GRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTLMFSATF 997

Query: 190  SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
               +  LA+      + + I   +   SD++  A +++  ++   ++ +L  Y    + +
Sbjct: 998  PRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQEEGSVL 1057

Query: 249  VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            VF   + S     +VL ++ +  ++L G + Q +R + +   + G  R+ IAT VAARG+
Sbjct: 1058 VFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATSVAARGL 1117

Query: 309  DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+ DL LVI+ +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R
Sbjct: 1118 DVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVR 1170


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 180/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +       +      AL
Sbjct: 50  GFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIV------DTAVREVQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H+V GTPGR+CD 
Sbjct: 104 ILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 164 IKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 224 KFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 281

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + L
Sbjct: 282 KVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSL 341

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 371


>gi|50123133|ref|YP_052300.1| ATP-dependent RNA helicase RhlB [Pectobacterium atrosepticum
           SCRI1043]
 gi|56749479|sp|Q6CZD9|RHLB_ERWCT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|49613659|emb|CAG77110.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 430

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           +NG  I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ENGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPATSQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSI 357


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 401 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 460

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 461 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 520

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 521 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 580

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 581 DTEEAEDETKLMENFYSKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 640

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 641 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 700

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 701 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 760

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 761 GKTGCAISFVTKD 773


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 190/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 398 FPREIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 457

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 458 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 517

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 518 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVSNLKP 577

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA++Y +    V I S  +    
Sbjct: 578 DTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTER 637

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 638 TEQIVYMMGENDKRKKLMEILSRSIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 697

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 698 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 757

Query: 339 GRKGMSVFVIPQN 351
           G+ G+++  + ++
Sbjct: 758 GKNGVAISFVTKD 770


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 193/363 (53%), Gaps = 14/363 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASAPL 76
           + N T VQ+  +   L  +D++  AQTGSGKT AF   + + +L    +    +  + PL
Sbjct: 70  FKNPTPVQKYAIPASLAGRDLMACAQTGSGKTAAFCFPIIAGILKRGLQGGHMNRKTYPL 129

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q+  E      +TGV   V  GG     + R ++ G  I+V TPGRL 
Sbjct: 130 ALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMERGCDILVATPGRLI 189

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSATISPA 192
           D I    +++S ++ + LDEAD MLD+GF   I  I+D    P+  +R+ ++FSAT    
Sbjct: 190 DLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERDMPRCGERQTMLFSATFPRE 249

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFC 251
           I  +A ++  D V + +      H+ I      V +  ++ N +++++        +VF 
Sbjct: 250 IQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLLDLVEAVPGLT-LVFV 308

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +    L ++     ++ G+ +QQER  AL+  R G+  + +ATDVAARG+D+P
Sbjct: 309 ETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPILVATDVAARGLDIP 368

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRRAERLFREANVSV 367
            +  VI+ +L S+ ++  HR GRTGRAG+KG +  +  ++    M R    L  EAN  V
Sbjct: 369 HVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDGQMARPLTELMSEANQEV 428

Query: 368 -VW 369
             W
Sbjct: 429 PTW 431


>gi|225426870|ref|XP_002276972.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 729

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/350 (36%), Positives = 188/350 (53%), Gaps = 14/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFS 70
           +ALS  GYV +T VQEA L+  L  KD LV A+TG+GK+ AF L     +L    ++R  
Sbjct: 273 KALSSAGYVQMTRVQEATLDVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKATSSNRIQ 332

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
                L L + PTRE+A Q+  E    L    G+ V   IGG     +++ L+ +   I+
Sbjct: 333 RVPPILVLILCPTREIASQIAAEANVMLKYHDGIGVQTLIGGTRFKFDQKRLESDPCQII 392

Query: 129 VGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL DHI  KG   + +  LK +VLDEAD +LDLGFR D+E I+D  P++R+ L+F
Sbjct: 393 VATPGRLLDHIENKGSFSVRLMGLKMLVLDEADHLLDLGFRKDMEKIVDCLPRQRQSLLF 452

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV-NILRYH 242
           SAT+   +  +++   +K+   V+        +    R + LVA       IV ++L+ H
Sbjct: 453 SATVPKEVRRISQLVLKKEHAFVDTVGLGNAETHAKVRQSYLVAPHKLHFQIVYHLLKDH 512

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +      IVFC+T    S    +L E    V  +     Q  R+   +  R+ +  V 
Sbjct: 513 ILQVPDYKVIVFCTTAMVTSLVFLLLQEMKVNVREIHSRKPQIYRTRISEEFRESKRLVL 572

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           I +DV+ARGI+ PD+ LVI   + S+ E  +HR GRTGR G++G  + ++
Sbjct: 573 ITSDVSARGINYPDVTLVIQMGIPSDREQYIHRLGRTGREGKEGEGILLV 622


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 19/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSG T AF L + S +           + EN 
Sbjct: 193 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGCTAAFLLPILSQIYTDGPGEALKAMKENG 251

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG    ++ RDL+ G H
Sbjct: 252 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCH 311

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 312 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 371

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L   
Sbjct: 372 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNAT 431

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  +  +VF  T+         L +  +   ++ G+ SQ++R  AL   R GR  + +AT
Sbjct: 432 GRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVAT 491

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 492 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 535


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY   T +Q A +   ++ +D++  A TGSGKT AF L L   +  L 
Sbjct: 353 LPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELP 412

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S   +   L+
Sbjct: 413 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLR 472

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 473 NGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 532

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I S      
Sbjct: 533 PDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVD 592

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R  ++A  D R   +  IL     +   IVF + + +     + + +  F  V L 
Sbjct: 593 TVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLH 652

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LVI+  ++++ E+  HR GRT
Sbjct: 653 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRT 712

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 713 GRAGKSGVAI 722


>gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 466

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/370 (32%), Positives = 191/370 (51%), Gaps = 7/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   + +Q+  +   L  +D++ +AQTG+GKT  F L +   L     + SP  
Sbjct: 15  AVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLTESKRKVSPNR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +    + G  ++V  PG
Sbjct: 75  I-RALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMMATRRGLDVLVACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +    ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT +  I
Sbjct: 134 RLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKKRQNLLFSATFADEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHGAKNAIVF 250
             LA     +   + +A  N     I+    LV   D+ N I    +++  +  +  +VF
Sbjct: 194 RELATGLLDNPAVIEVAPRNSTAERIEQ---LVHPCDKANKIALLSHLVTSNNWQQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AARG+D+
Sbjct: 251 TRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    ++  E
Sbjct: 311 DKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCE 370

Query: 371 PAPSVEAIRE 380
                EA RE
Sbjct: 371 QVAGFEASRE 380


>gi|320014325|gb|ADV97896.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 451

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  +        
Sbjct: 15  AVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  I+V T G
Sbjct: 75  PVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVATHG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  I
Sbjct: 135 RLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A  N     I      V  + +   +  ++     +  +VF  T
Sbjct: 195 KGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLVFNRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AARG+D+  L
Sbjct: 255 KHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAARGLDIDQL 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV-- 368
             V++ EL + PE+ +HR GRTGRA R G ++ ++      + R  ERL +     +   
Sbjct: 315 PHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALD 374

Query: 369 -WEPAPSVEA 377
            +EP PS++A
Sbjct: 375 GYEPDPSIKA 384


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y + T +Q   +   L+ +DVL  AQTGSGKT AF   L   + +     +  
Sbjct: 244 KAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKHV-STQPPVTAG 302

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  E +       + V    GG S   +   L+ GA IVV TP
Sbjct: 303 EGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALKEGADIVVATP 362

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++G   N+  +  +VLDEAD M +LGF   +  + +     R+ L+FSAT    
Sbjct: 363 GRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFRKR 422

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVF 250
           I  LAK+   D VR++     + + D+  R +L+      RD  + N++    A + +VF
Sbjct: 423 IEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVELLSAGSVLVF 482

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +    +    L    F+ + L G++ Q ER+  +   +     + +ATDVAARG+D+
Sbjct: 483 VTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDVAARGLDI 542

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P +  V++ +++ + +   HR GRTGRAG +G +  +I
Sbjct: 543 PHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLI 580


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ +  S 
Sbjct: 16  LQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSI 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLRRGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I 
Sbjct: 135 LLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D + + ++  N   + +    V V    + +   ++LR    K  +VF  TR
Sbjct: 195 MLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL 
Sbjct: 255 NGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 315 LVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
 gi|74634065|sp|Q6C7D2|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica]
          Length = 605

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 197/358 (55%), Gaps = 9/358 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  IP  +   ++L + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 131 KPFSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 190

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F P +    + ++PTRELA+Q+      L A     + + IGG +  +E  
Sbjct: 191 EML--RKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIVIGGNNRRQEEE 248

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++  +G    +LKA+++DEAD +L++GF  +++ I+   PK
Sbjct: 249 KLNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPK 308

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K  + +N+   N   +   ++   V+     R   +
Sbjct: 309 ERQSMLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGYVVCDSDKRFLLL 368

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + + 
Sbjct: 369 FSFLKRNAGKKIIVFLSSCNSVKFYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFINAKQ 428

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
            V I TDVAARG+D+P ++ +I  +   +P + +HR GRT R    G S+ F+ P  +
Sbjct: 429 GVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARGSASGKSIMFLTPSEL 486


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/334 (34%), Positives = 179/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+      S   A
Sbjct: 77  LQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPVVSSNRA 136

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 137 RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 195

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  I 
Sbjct: 196 LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATFTDDIR 255

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+A +  +  V ++++  N   S I   AV V   ++ +  ++++  +   +A+VF  TR
Sbjct: 256 TMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWDHALVFVKTR 315

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 316 NGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLP 375

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 376 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 409


>gi|261823430|ref|YP_003261536.1| ATP-dependent RNA helicase RhlB [Pectobacterium wasabiae WPP163]
 gi|261607443|gb|ACX89929.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 430

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSI 357


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 186/355 (52%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D        L L
Sbjct: 60  GFEKPSAIQKRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLDYGLVECQSLVL 115

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           A  PTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 116 A--PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREQQRILASGVHVVVGTPGRVFDM 173

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    +  
Sbjct: 174 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEGLEITL 233

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   D + + + ++        +++F +T   V
Sbjct: 234 RFMDKPVRILVKRDELTREGIKQFYVNVEKEDWKLDTLCDLYDSLAITQSVIFVNTLRMV 293

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+  RGID+  + LVI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQITRDIIMREFRSGSSRVLITTDLLDRGIDVQQVSLVI 353

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +LS+  EN LHR GR+GR GRKG+++  + ++ +R    + R  N ++   PA
Sbjct: 354 NYDLSTQTENYLHRIGRSGRFGRKGVAIIFVTRDDERMLFDIQRFYNGTIEELPA 408


>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 403

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 179/348 (51%), Gaps = 17/348 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FENI   Q +  A++++GY   T++Q   +   L   DV+ SAQTG+GKT AF L L   
Sbjct: 3   FENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLLQR 62

Query: 62  LLAENDRFSPASAPL-------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           L          +AP        AL + PTRELA QV   +        +      GG  +
Sbjct: 63  L--------SDTAPQQGQRRIRALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPM 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ++   L+ G  IVV TPGRL DH+    +++ H+  ++LDEAD MLD+GF+  IE IL 
Sbjct: 115 GKQTAALRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRMLDMGFKPAIERILK 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           S P +R+ L+FSAT S A+  LA+ +  +   +   + N     ++  A  V    +   
Sbjct: 175 SVPNQRQTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQGAYFVDAGRKREL 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++     +  +VF  T+    R  + L     +  ++ G+ SQ +R  AL   +   
Sbjct: 235 LTQLINDGDWRQVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKS 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            R  +ATDVAARG+D+  L  V++ +L +NPE+ +HR GRTGR G  G
Sbjct: 295 VRALVATDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSG 342


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 185/347 (53%), Gaps = 8/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           IP++I   LS+  Y   T +Q   +   L   D++  A TGSGKT  F L +  TL LA+
Sbjct: 16  IPELIAR-LSDLEYSQPTPIQAKAIPSILAGSDLIAGANTGSGKTATFALPMLQTLFLAQ 74

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDL 121
             + + +       L + PTRELAVQV   ++   A   G +  V + GGVSV+ + + L
Sbjct: 75  GAKKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +T L +    + V + + S++   S +  R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVTQLTQKLLTNPVEIQVQSKD--ESTLVQRVFTVNKGEKTTVLAHLIKQ 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  + A++F + +         L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 313 DIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLI 359


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 28/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L 
Sbjct: 400 FPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLP 459

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 460 KIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRL 519

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 520 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 579

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 580 DTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 639

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 640 TEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGK 699

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 700 GQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 759

Query: 339 GRKGMSVFVIPQN 351
           G+ G ++  + ++
Sbjct: 760 GKTGCAISFVTKD 772


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|229514570|ref|ZP_04404031.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348550|gb|EEO13508.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 452

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/374 (32%), Positives = 195/374 (52%), Gaps = 23/374 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q   +   +  +D+L S++ GSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQHQAIPLTIAGRDLLASSRQGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV  EL  +         +  GG + + + + L  G   +V TPGR
Sbjct: 78  PRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPRFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A+++ IL     +  I+F 
Sbjct: 198 VNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVVWE 370
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++ P++                 WE
Sbjct: 318 AVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKD-----------------WE 360

Query: 371 PAPSVEAIRERDAQ 384
               VEA  +++ Q
Sbjct: 361 SFKRVEAFLQQEIQ 374


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/354 (32%), Positives = 185/354 (52%), Gaps = 8/354 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 159 FPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHINNQ 217

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R      P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 218 PRLQRGDGPIALVLAPTRELAQQI-QQVAADFGVSSQVRNTCIFGGAPKGPQARDLERGV 276

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 277 EICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 336

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+ +  D +++NI S +   + +I     +    +++  ++ +L     
Sbjct: 337 SATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEEISQ 396

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R  R+ + +AT
Sbjct: 397 EAENKTIIFVETKRKVDEITRAINRYGWQAIGIHGDKSQQERDYVLNQFRSSRSAILVAT 456

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
           DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  +
Sbjct: 457 DVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHK 510


>gi|302535427|ref|ZP_07287769.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302444322|gb|EFL16138.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 508

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 192/365 (52%), Gaps = 13/365 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL    + L
Sbjct: 82  DMPAELLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGL 141

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            AE  +      PLAL + PTRELA QV   L        + +   +GG+S+ R+   L+
Sbjct: 142 RAEPRQ------PLALILVPTRELAQQVTDALTPYARAVKLRLTTVVGGMSIGRQAGALR 195

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRR 181
            GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +R
Sbjct: 196 GGAEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMTDMGFMPQVTALLDQVRPEGQR 255

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I   
Sbjct: 256 ML-FSATLDRNVDLLVRRYLIDPVVHSVDPTAGAVTTMEHHVLHVHGADKQRTTTEIAAR 314

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 315 EG--RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 372

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   RL +
Sbjct: 373 NVAARGIHVDSLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMTRLMQ 432

Query: 362 EANVS 366
            A ++
Sbjct: 433 AAGIT 437


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 9/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ RDL  G+ 
Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 IVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRD--NAIVNILRYH 242
           AT    +  LA +Y  D ++V + S   +  H+      V+     RD  N  +      
Sbjct: 299 ATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR+ + +ATD
Sbjct: 359 NEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATD 418

Query: 303 VAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           VAARGI ++  +  VI+ ++  N E+ +HR GRTGRAG  G ++ F   QN    A+   
Sbjct: 419 VAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLIS 478

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 479 IMREANQNI 487


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 181/337 (53%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E GY   +S+Q   +   L  KDVL SAQTG+GKT +F L +   +L+   R + +
Sbjct: 14  QSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPILQ-MLSTKPRAN-S 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L + PTRELA QV   +            V  GGV ++ +   L++G  I+V TP
Sbjct: 72  NRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKLRSGVEILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + +    +  +VLDEAD MLD+GF  D++ I++  PK R+ LMFSAT +  
Sbjct: 132 GRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQNLMFSATFTDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFC 251
           I +  K      + +++   N     I  + V     +R  A+++ L +    N A+VF 
Sbjct: 192 IRSFVKTILNQPIEIDVTPRNTTVVKIK-QTVHPVDKNRKAALLSHLIHRNKWNQALVFS 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++  K LAE      A+ G  SQ +R+ AL   + G   + +ATD+AARGID+ 
Sbjct: 251 KTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHILVATDIAARGIDID 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  V++ +L    E+ +HR GRTGRAG  G+++ ++
Sbjct: 311 QLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLV 347


>gi|242051997|ref|XP_002455144.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
 gi|241927119|gb|EES00264.1| hypothetical protein SORBIDRAFT_03g005040 [Sorghum bicolor]
          Length = 644

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/367 (33%), Positives = 199/367 (54%), Gaps = 26/367 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL   G+   T VQ A +   L  KDV V A TGSGKT+AF + +   L   + 
Sbjct: 32  PEVV-EALDRGGFQRCTPVQAAAIPHLLSHKDVAVDAATGSGKTLAFIVPVVEILRRRSS 90

Query: 68  RFSPASAP-LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN-G 124
           R  P S   LAL I+PTREL+ Q+    +  +A   GV   + +GG+ +  E + ++  G
Sbjct: 91  R--PKSHEVLALIISPTRELSSQIFNVAQPFFATLNGVSSMLLVGGLDIKAELKKVEEEG 148

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+I+VGTPG+LCD +    L   +L+ ++LDEAD +LD+GF+  I FIL   PK RR  +
Sbjct: 149 ANILVGTPGKLCDIMHTDALEYKNLEILILDEADRLLDMGFQKHINFILSMLPKLRRTGL 208

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSD---------------IDYRAVLVALS 229
           FSAT + A+  L+K   ++ +RV + +E +  S                +    ++   S
Sbjct: 209 FSATQTKAVADLSKAGLRNPIRVEVKTEAKSTSKDAGQQELGSSKTPLGLRLEYMICEAS 268

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL----AEHLFQVVALSGELSQQERSN 285
            + + +V+ L  +  K  +V+ +T A V  +  VL    +     ++A  G++ Q  R  
Sbjct: 269 KKSSQLVDFLVQNSGKKIMVYFATCACVDYWAVVLPLINSLKGSPIIAYHGKMKQGLREK 328

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS- 344
           AL       + V + TDVAARG+D+P ++L++  +   +P   +HR+GRT R  ++G + 
Sbjct: 329 ALASFSALSSGVLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAI 388

Query: 345 VFVIPQN 351
           VF++P+ 
Sbjct: 389 VFLLPKE 395


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 202/367 (55%), Gaps = 13/367 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q+  E + + G+   T +Q       LR +D++  A+TGSGKT+  G  +   +L +  +
Sbjct: 236 QLATEWVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTL--GYLIPGFILLKRLQ 293

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
            +    P  L ++PTRELA Q+  E +  + ++  + +VC+ GG     + RDL+ GA I
Sbjct: 294 HNSRDGPTVLVLSPTRELATQIQDEAK-KFGRSSRISSVCLYGGAPKGPQLRDLERGADI 352

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+A
Sbjct: 353 VVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTA 412

Query: 188 TISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           T    +  +A +   + V+VNI + ++   +  I     ++   ++   +  ILR    G
Sbjct: 413 TWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPG 472

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +K  I+FCST+    +  + LA   +   A+ G+ SQ ER + L   R GR  + +ATDV
Sbjct: 473 SK-IIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDV 530

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLF 360
           AARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++  F   Q+ +  ++  ++ 
Sbjct: 531 AARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKIL 590

Query: 361 REANVSV 367
             AN SV
Sbjct: 591 EGANQSV 597


>gi|195385378|ref|XP_002051383.1| GJ15436 [Drosophila virilis]
 gi|194147840|gb|EDW63538.1| GJ15436 [Drosophila virilis]
          Length = 403

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 176/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSMRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 223 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 283 DQLTQEMSNHNFTVSAMHGDMDQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 343 NYDLPSNRENYIH 355


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 190/369 (51%), Gaps = 21/369 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT  F   + S    E  R  P +A     
Sbjct: 191 YTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILSASFTEGPRPPPETAAPTYG 250

Query: 75  ------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL +APTREL  Q+  E      ++ V  AV  GG  ++++ R ++ G  ++
Sbjct: 251 RARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADINQQLRQIERGCDLL 310

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLM 184
             TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I+          R+ LM
Sbjct: 311 SATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEPQIRRIVQGEDMPGVNDRQTLM 370

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+++ KD + +++        +I  +   V   D+ + +++IL     
Sbjct: 371 FSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYVEDGDKRSVLLDILASQSK 430

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++    +VF  T+      +  L  +     ++ G+ +Q+ER  ALQ  R GR  + +AT
Sbjct: 431 EDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRTQREREMALQTFRTGRTPIMVAT 490

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAER 358
            VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G+S        +N+ R    
Sbjct: 491 AVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNVGVSTAFFNRGNKNIVRDLVE 550

Query: 359 LFREANVSV 367
           L REAN  +
Sbjct: 551 LLREANQEI 559


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 396 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 455

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 456 KVLEEANQAI 465


>gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 469

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 200/404 (49%), Gaps = 39/404 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-------- 62
           I  A++++GY + T +Q   +   +   DV+ SAQTG+GKT  F L L   L        
Sbjct: 13  ILRAIADQGYTDPTPIQVQSIPLVIAGHDVMASAQTGTGKTAGFTLPLLQRLCEGLPLQT 72

Query: 63  --------LAENDRFSPASAPL-----------------ALAIAPTRELAVQVGRELEWL 97
                   +  +   +  S P+                 AL + PTRELA Q+G  +   
Sbjct: 73  SPTRNQTSIRSDASRNGTSRPILRKRKGSVSRGDHRPIRALIVTPTRELAAQIGENVNAY 132

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                V   V  GGV ++ +   L+ G  I++ TPGRL DH+  + +++S ++ +VLDEA
Sbjct: 133 SKYLPVRSTVIFGGVKINPQISKLRQGVDILIATPGRLLDHVGQRTVDLSQVEVLVLDEA 192

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF  DI  IL    ++R+ L+FSAT S  I  LA ++ +    + +A +N    
Sbjct: 193 DRMLDMGFIHDIRKILALVSEERQTLLFSATFSKPIKKLADSFLRSPKTIEVARQNATAD 252

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +D     V    +   +  I+     +  +VF  T+   +R TK L +      A+ G 
Sbjct: 253 TVDQVVYPVDRVRKSELLSFIIGSRNWQQVLVFTRTKHGANRLTKHLQKDGLTAAAIHGN 312

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ  R+ AL   +    RV +ATD+AARG+D+  L  V++ EL +  E+ +HR GRTGR
Sbjct: 313 KSQGARTRALAAFKARDVRVLVATDIAARGLDIDLLPHVVNFELPNVAEDYVHRIGRTGR 372

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFRE---ANVSVVWEPAPSV 375
           AG +G +V ++    +++ R  ERL R      V   +EP PS+
Sbjct: 373 AGNEGQAVSLVCVDEKDLLRGIERLLRRDIPREVIPGYEPDPSI 416


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 195/369 (52%), Gaps = 24/369 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
           +P  + + L +  Y   +S+Q A +   L+ KD++  A+TGSGKT AF   L +A + L 
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +    P A+ +APTRELA Q+  E        G      +GG +   +   +  G
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           AHIVV TPGRL D +  +   +S    VV+DEAD MLD+GF DD+  IL S P       
Sbjct: 376 AHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEK 435

Query: 178 ------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                        +R+ +MFSAT+ P +  LAK+Y  + V + I +  +    ++ R  +
Sbjct: 436 DGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEM 495

Query: 226 VA-LSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           ++  S +   +  IL  +  +   I+F + + ++    K L    +  V L G  SQ++R
Sbjct: 496 ISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQR 555

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             A++ +R+  A + +ATD+A RGID+P++ LV++  ++ + E+  HR GRTGRAG+ G 
Sbjct: 556 ERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGT 615

Query: 344 SV-FVIPQN 351
           ++ F+ P++
Sbjct: 616 AITFLGPED 624


>gi|446778|prf||1912301A initiation factor eIF-4A
          Length = 402

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 8/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A    +L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIA----ILQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRK-LRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 222 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCTTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 342 NYDLPSNRENYIH 354


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 8/365 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 108 VQAFEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILP- 166

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R S    P+ L +APTRELA Q+ + +   +  +  +   CI GG     +
Sbjct: 167 AIVHINNQPRLSRGDGPIVLILAPTRELAQQI-QTVARDFGSSSCIRNTCIFGGSPKGPQ 225

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 226 ARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 285

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D +++NI S     + +I     +    +++  + 
Sbjct: 286 PDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLS 345

Query: 237 NILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +LR  GA+ +  I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+
Sbjct: 346 QLLREIGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLSEFRNGK 405

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 406 TMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 465

Query: 355 RAERL 359
           +A+ L
Sbjct: 466 QAKEL 470


>gi|319948221|ref|ZP_08022378.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
 gi|319438115|gb|EFV93078.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
          Length = 533

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 175/361 (48%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + + L+  G    T +Q A L   L  +DVL   +TGSGKT AF L L + L A 
Sbjct: 9   GVPSPLLDVLNGAGISTPTPIQSATLPDALSGRDVLGRGRTGSGKTYAFCLPLVARLAAS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +  +AP  L +APTRELA Q+   L  L    G+   V  GGVS  R+   L  G 
Sbjct: 69  GGRRT-RNAPRGLILAPTRELARQIDETLAPLANALGMKTTVIFGGVSQGRQVDALNRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +  K   +  ++  VLDEAD M DLGF   +  IL ++P   + L+F
Sbjct: 128 DIVVACPGRLEDLMGQKHCRMDAIEISVLDEADHMADLGFLPGVTRILSATPADAQRLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   +  D V  ++   +       +    V   DR  A+ ++   H   
Sbjct: 188 SATLDSGVQKLVTRFLTDPVDHSVDDGSATPGPTAHHVFHVDADDRVRALADLAGAH--P 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    R  K L       V L G LSQ  R   L     G A V +ATD+AA
Sbjct: 246 RTVMFTRTKHGAKRLAKQLTGRGVASVDLHGNLSQNARVRNLDAFSSGEATVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+HA+  +  +  +HRSGRT RAG  G  V V   +  R    L R A V
Sbjct: 306 RGIHVDDVGLVVHADPPAEHKAYVHRSGRTARAGAIGTVVTVATADQVREVRSLLRAAGV 365

Query: 366 S 366
           +
Sbjct: 366 T 366


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 4/328 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +   L+ +D++  AQTGSGKT AF L +   +L + D       P  L
Sbjct: 136 GYNKPTPIQRHAIPIVLKGRDMMGCAQTGSGKTAAFMLPMIDWILGQQDLQLHHRQPYVL 195

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL +Q+  E       TG+ V    GG +   + + L+ G  I+V TPGRL D 
Sbjct: 196 VVAPTRELVIQIHDEARKFSHGTGLKVVCIYGGAASTHQLQMLRGGCQIMVATPGRLLDF 255

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAIT 194
           +    ++   +K VVLDEAD MLD+GF   IE ++ +    S  +R+ LMFSAT +P I 
Sbjct: 256 MDRGVVSFEKVKYVVLDEADRMLDMGFLPAIEKVMGNATMPSKDQRQTLMFSATFAPDIQ 315

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  +  + + V +        D++     V    +   +  +L    A+  +VF  T+
Sbjct: 316 QLAGVFLNNYIYVAVGIVGGACGDVEQVVYEVEKFKKRKKLEELLGEGNARGTLVFVETK 375

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            S      +++E  F   ++ G+  Q+ER  AL+  ++GR  V IAT VAARG+D+ ++ 
Sbjct: 376 RSADYLASLMSETKFPTTSIHGDRLQREREMALKDFKEGRMDVLIATSVAARGLDIKNVS 435

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
            V++ +L  N ++ +HR GRTGR G KG
Sbjct: 436 HVVNYDLPKNIDDYVHRIGRTGRVGNKG 463


>gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 425

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A    LL
Sbjct: 14  FAIAPEVVA-GLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHRLL 72

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R  L+ 
Sbjct: 73  QSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++ D  P   KR 
Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++ ++  
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AIVF +T+ S       L     +V  L+G+++Q++R   L     G     +AT
Sbjct: 251 EWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLDFLVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++
Sbjct: 311 DVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAI 354


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/349 (34%), Positives = 188/349 (53%), Gaps = 25/349 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-------SAPLALAIAPTRELAVQV 90
           +D++  AQTGSGKT  F   +  T+L  N    P        + P  L +APTRELA Q+
Sbjct: 11  RDLMACAQTGSGKTAGFLFPIIITML-RNGGTEPEGGVRGRRTYPECLVLAPTRELASQI 69

Query: 91  GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
             E +     TG+   V  GG  V  + R ++ G  ++V TPGRL D I    L++ ++K
Sbjct: 70  QDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCDLLVATPGRLVDLIERGRLSMENVK 129

Query: 151 AVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDAV- 205
            +VLDEAD MLD+GF   I  I++         R+ +MFSAT    I  LA ++ +D + 
Sbjct: 130 FLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFSATFPANIQRLAGDFMRDYIF 189

Query: 206 ----RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
               RV  ASEN   S ++Y    V  +D+ +A++  L        ++F  T+ +     
Sbjct: 190 LTVGRVGSASENVVQS-VEY----VEQNDKLDALMRFLLTIQEGLILIFVETKRNCDFVE 244

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            +L E  F   ++ G+ SQ+ER ++L+  + GR  V +ATDVAARG+D+P++  V++ +L
Sbjct: 245 DILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARGLDIPNVTQVVNYDL 304

Query: 322 SSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSV 367
            +N ++ +HR GRTGRAG  G ++ FV  +N  + R    L  E+   V
Sbjct: 305 PTNIDDYVHRIGRTGRAGNTGAALSFVNEKNSGVARELRELLEESGQEV 353


>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
 gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
          Length = 441

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   P+++ +AL ++GY   T++Q+  + P +  +DVL SA TG+GKT AF L 
Sbjct: 4   LTTFEELDLSPELL-QALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLP 62

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL ++ R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+    
Sbjct: 63  ALQHLL-DHPRRKPGP-PRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVAYQNH 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                    +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 121 GEVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETR 180

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +   A+    D V+++     R+   I    Y A    L  +  
Sbjct: 181 WRKYTWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHAD--NLEHKTK 238

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + +IVF   R SV   ++ L +   +   L GE++Q +R+ A+  ++DG
Sbjct: 239 LLARLISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDG 298

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG +V ++
Sbjct: 299 VVNVLVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLV 353


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 178/338 (52%), Gaps = 3/338 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y + T +Q   +   L+ +DVL  AQTGSGKT AF   L   + +     +  
Sbjct: 244 KAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKHV-STQPPVTAG 302

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  E +       + V    GG S   +   L+ GA IVV TP
Sbjct: 303 EGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALKEGADIVVATP 362

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH++G   N+  +  +VLDEAD M +LGF   +  + +     R+ L+FSAT    
Sbjct: 363 GRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLFSATFRKR 422

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVF 250
           I  LAK+   D VR++     + + D+  R +L+      RD  + N++    A + +VF
Sbjct: 423 IEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVELLSAGSVLVF 482

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +    +    L    F+ + L G++ Q ER+  +   +     + +ATDVAARG+D+
Sbjct: 483 VTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDVAARGLDI 542

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P +  V++ +++ + +   HR GRTGRAG +G +  +I
Sbjct: 543 PHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLI 580


>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 426

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 15/374 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY + T +Q   +   L+  D+L +AQTG+GKT  F L +   L   + + S   
Sbjct: 15  AIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPILQRL--SSIKASSGK 72

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             L  L + PTRELA QV   +      TG+   V  GGV  + + + +  G  I+V TP
Sbjct: 73  RVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKAIAAGLDILVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  K ++++ ++ +VLDEAD MLD+GF  DI+ IL + PK+R+ L+FSAT S  
Sbjct: 133 GRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQRQNLLFSATFSTE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAKNAIV 249
           I  LA         + +A  N  +  I   A L+   DR+     + ++++ +  K  +V
Sbjct: 193 IKALADGLLNKPELIEVARSNSANEAI---AQLIHPVDRNQKHPLLAHLIKSNDWKQVLV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +     +A+ G  SQ  R+ AL   + G+    +ATD+AARGID
Sbjct: 250 FTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTALVATDIAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA--- 363
           +  L  V++ +L +  E+ +HR GRTGRAG  G++V ++      M R  E+L ++    
Sbjct: 310 IDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIEKLIKQKLPQ 369

Query: 364 NVSVVWEPAPSVEA 377
            V   +EP P+  A
Sbjct: 370 EVIAGFEPDPNAIA 383


>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 459

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/335 (34%), Positives = 189/335 (56%), Gaps = 5/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   G+ + T +Q   +   +  +D+L S++TGSGKT+A+ L  A   +      S
Sbjct: 26  ILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAY-LIPALHRVYRVKALS 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A + L + PTRELA QV  +L  L A + +  A+ +GG + + + +DLQ     +V 
Sbjct: 85  NKDARV-LILVPTRELAKQVYSQLRLLVASSKLKTALILGGENFNDQIKDLQKDPQFIVA 143

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI 189
           TPGRL DH+  + + +  L+ ++LDEAD MLDLGF D ++ I D +S + R+ L FSAT+
Sbjct: 144 TPGRLVDHLNQRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRLRQTLFFSATL 203

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNA 247
             A +  +A+    +  RV I +    HSDI  +  L    D   AI+ ++L     K  
Sbjct: 204 DNAEVNDIAQRLLNEPSRVAIGAGTDVHSDIKQKFYLCDHLDHKEAILTHVLEQETIKQG 263

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+    R   +L E  F   AL+G+L+Q  R+  +     G  ++ ++TD+A+RG
Sbjct: 264 IIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFARGHFQILVSTDLASRG 323

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +D+ ++  VI+ ++  + E  +HR+GRTGRAG +G
Sbjct: 324 LDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQG 358


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 189/361 (52%), Gaps = 21/361 (5%)

Query: 5   ENIPQVIG------------EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +NIPQ I             + +   GYV  T VQ+  +   L ++D++ SA TGSGKT 
Sbjct: 320 QNIPQYITSFEEAGLRPLLLQNIKNSGYVKPTPVQKGSIAVILAKRDLIASAVTGSGKTA 379

Query: 53  AFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           A+ + + + LL +            P  + +APTRELA+Q+ RE  + +A   V+ +V I
Sbjct: 380 AYLVPVMNILLEQGISGGSHGMVQKPEVVILAPTRELAIQIHREA-YKFAYNSVLKSVLI 438

Query: 110 -GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG     +R +LQ G +I+V T GRL D +     + S +K ++LDEAD MLD+GF  D
Sbjct: 439 YGGTVSSNQRSNLQAGCNILVATTGRLKDFLDRGVFDFSAVKFLILDEADRMLDMGFGPD 498

Query: 169 IEFIL--DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           IE I    + P K  RR  MFSAT    +  LA NY +D + V   +    + D+     
Sbjct: 499 IEKIAAHPTMPPKGIRRTCMFSATFPEEVQALAANYMEDYIFVTTGTVGGTNPDVQQEFF 558

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             A +++   ++  LR  G    IVF  ++ +       L  +  Q  ++ G+  Q +R 
Sbjct: 559 QCARNEKRTKLMETLRGLGESKIIVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQRE 618

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL+ ++ G+  V +AT+VAARG+D+  +  VI+ +L S+ E  +HR GRTGR G  G S
Sbjct: 619 EALRDLKSGKRNVLVATNVAARGLDIEGVNYVINYDLPSDIEEYVHRIGRTGRVGNVGHS 678

Query: 345 V 345
           +
Sbjct: 679 I 679


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   +S+Q       L  +DV+  A+TGSGKT++F L  A   +   
Sbjct: 116 FPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDVVAIAETGSGKTISFCLP-AMVHINAQ 174

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GG     + RDLQ G  
Sbjct: 175 PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVE 234

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ L+FS
Sbjct: 235 ICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFS 294

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-------RQH----SDIDYRAVLVALSDRDNAI 235
           AT    +  LA ++  D ++VNI S +        QH    +D D R+ L++  ++    
Sbjct: 295 ATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEK---- 350

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I + +G    ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 351 --ISQENG--KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 407 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKS 466

Query: 356 AERL 359
           A  L
Sbjct: 467 AREL 470


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 9/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ RDL  G+ 
Sbjct: 179 PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 IVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRD--NAIVNILRYH 242
           AT    +  LA +Y  D ++V + S   +  H+      V+     RD  N  +      
Sbjct: 299 ATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQD 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR+ + +ATD
Sbjct: 359 NEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATD 418

Query: 303 VAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           VAARGI ++  +  VI+ ++  N E+ +HR GRTGRAG  G ++ F   QN    A+   
Sbjct: 419 VAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLIS 478

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 479 IMREANQNI 487


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 187/358 (52%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 132 FPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+  E+   + ++  +   C+ GGV    + RDL  G 
Sbjct: 191 PLLSPGDGPIVLILAPTRELAVQIQTEIS-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 249

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 250 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 309

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 310 SATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 369

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             KN  ++F  T+      T+ L +  +  +++ G+  Q ER   LQ  ++G++ + +AT
Sbjct: 370 DRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGKSPIMVAT 429

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 430 DVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARDL 487


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ + E + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L + +  L 
Sbjct: 394 FPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLP 453

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L+ 
Sbjct: 454 KIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRL 513

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P      
Sbjct: 514 GCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKP 573

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 574 DTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 633

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    +V  +++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 634 TEQIVHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 693

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 694 GQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 753

Query: 339 GRKGMSV 345
           G+ G ++
Sbjct: 754 GKTGCAI 760


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 180/344 (52%), Gaps = 9/344 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY N T++QE  +   L+ +DV+  AQTG+GKT AF +     LL           P  L
Sbjct: 20  GYKNPTAIQEQAIPVGLQGRDVMGLAQTGTGKTAAFVVPALQRLLQ-----GKRGKPRVL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q       L  KTG+      GGVS   + + +++G  IVV  PGRL D 
Sbjct: 75  VLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQKIRSGVEIVVACPGRLLDL 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
            R + +N+S ++ ++LDE+D MLD+GF  DI  I+   P KR+ ++FSAT+   I TLA 
Sbjct: 135 ARDRAVNLSQVETLILDESDRMLDMGFMPDIRSIMKMLPPKRQNMLFSATMPADIRTLAD 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
               D  RV +  E R    I      V    +   ++ +LR       +VF  T+   +
Sbjct: 195 EILDDPARVQVNHE-RALDSISQCLYPVKRRPKAEMLIELLREKQDGATLVFTRTKHMAT 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R  K L++  F+   L G +SQ  R   ++  + G   + +ATD+A+RGID+  +  V++
Sbjct: 254 RIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILVATDIASRGIDVAGIGHVVN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQN--MQRRAERL 359
            ++    E+  HR GRTGRA   G  S FV P++  + R  ERL
Sbjct: 314 FDMPDTAESYTHRIGRTGRADSCGDASTFVEPKDFGLIRAIERL 357


>gi|326478694|gb|EGE02704.1| ATP-dependent RNA helicase has1 [Trichophyton equinum CBS 127.97]
          Length = 568

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 207/376 (55%), Gaps = 17/376 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 103 KAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 160

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 161 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 217

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK  R+ ++FSA
Sbjct: 218 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTMLFSA 277

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 278 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 336

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 337 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 396

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  + Q  +       RE
Sbjct: 397 AARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFL-QPSEVGFINHLRE 455

Query: 363 ANVSVVWEPAPSVEAI 378
           A V VV    P+   I
Sbjct: 456 ARVPVVEFEFPTKHII 471


>gi|311739803|ref|ZP_07713637.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304876|gb|EFQ80945.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 441

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 201/398 (50%), Gaps = 8/398 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+ RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D   
Sbjct: 20  ICDGLASRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDRVFDDADIDE 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV  +L+       V +A   GG     + + L  G  +++G
Sbjct: 80  LDGTPRALVVVPTRELAQQVTEDLQVAATHLPVRLASIYGGRPYEEQIKQLNKGVDVIIG 139

Query: 131 TPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
           TPGRL D H RG  L +  +  +VLDEADEMLDLGF   +E IL +      + ++FSAT
Sbjct: 140 TPGRLIDLHERGN-LQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAHQTMLFSAT 198

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246
           +  AI TLA+ +    + +   S  +  +    R V       D+   + + L+  G   
Sbjct: 199 MPGAILTLARRFMDKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAHALQAAGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ + ++    LA   F V A+ G+L Q+ R  +L   R G+  + +ATD+AAR
Sbjct: 259 TIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G ++ ++  +   + + +  E ++ 
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQVINDELDLG 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              EP P        +  + L  P  ++   G E K+V
Sbjct: 379 ---EPNPPQWFSTSPELAQALDIPAEVEETVGPETKVV 413


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 191/370 (51%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   + ++G+   T++Q       L   D++  AQTGSGKT+A+ L  A   +  
Sbjct: 128 NWPDYVQREIQKQGFTEPTAIQAQGWPIALSGMDMVGIAQTGSGKTLAYILP-AIVHINH 186

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+ L +APTRELA Q+ +++   +  +  V   CI GG     + RDL++G
Sbjct: 187 QPRLLRGEGPIVLVLAPTRELAQQI-QQVACDFGTSSAVRNTCIFGGAPKMLQARDLESG 245

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM
Sbjct: 246 VEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 305

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDN--AIVNILR 240
           +SAT    +  LA+ +  D V++NI S   +  H+ +    V      +     ++N + 
Sbjct: 306 WSATWPKEVRRLAEEFLNDYVQINIGSLQLSANHNILQIVDVCSEYEKQTKLLKLLNEIA 365

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+  V    + +  + +Q +A+ G+ SQ +R   L   R GR  + +A
Sbjct: 366 NEPETKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYVLNQFRCGRVNILVA 425

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR  + G +  F  P N+ +  +  
Sbjct: 426 TDVAARGLDVDDVKFVINFDYPNNSEDYVHRIGRTGRHDKTGTAYTFFTPSNVNKAGDLV 485

Query: 358 RLFREANVSV 367
            + +EAN  V
Sbjct: 486 AVLQEANQVV 495


>gi|195030620|ref|XP_001988166.1| GH11018 [Drosophila grimshawi]
 gi|193904166|gb|EDW03033.1| GH11018 [Drosophila grimshawi]
          Length = 389

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 176/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 35  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TAVRECQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 89  ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 149 INRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 209 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 269 DQLTQEMSSHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 328

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 329 NYDLPSNRENYIH 341


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 175/336 (52%), Gaps = 10/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  A   +  N R +       +
Sbjct: 36  GFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIG-ALQRIDPNQRKTQV-----I 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +AP RELA Q+   ++ +     +    CIGG S    R   + G HI++ TPGRL D 
Sbjct: 90  ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQGVHIIIATPGRLIDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P   ++ +FSAT    I  L+K
Sbjct: 150 MKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSK 209

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRA 255
            + ++     I  +  Q +    R   +A+   D     +V + +      +I+FC+++ 
Sbjct: 210 QFLREGT-AKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLVELYKNLTVSQSILFCNSKK 268

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V      L    F V  +  ++ Q+ER   +Q  + G AR+ ++TD+  RGID+  L L
Sbjct: 269 TVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSL 328

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VI+ E     E  +HR GR GR GRKG+++ ++ Q 
Sbjct: 329 VINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQ 364


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 184/347 (53%), Gaps = 21/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--------------- 64
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +                 
Sbjct: 228 YTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQ 287

Query: 65  ENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN ++      P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 288 ENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLER 347

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + + +   +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 348 GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 407

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ +D + + +        +I  + V V  +D+ + ++++L
Sbjct: 408 RQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 467

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR  + 
Sbjct: 468 NATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIL 527

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 528 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 574


>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
          Length = 496

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/335 (34%), Positives = 176/335 (52%), Gaps = 5/335 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +   +   D++  AQTG+GKT AF L +   L+    R     +P  L
Sbjct: 20  GYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILHRLITNPAR---TRSPRTL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R        T +   V  GGV +  + R L+ G  ++V  PGRL DH
Sbjct: 77  ILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQGVDVIVACPGRLLDH 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    +    L+ +VLDEAD M D+GF  DI+ IL + P KR+ L+FSAT+ PAI+ LA 
Sbjct: 137 LNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQTLLFSATMPPAISGLAA 196

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
               D V V I       S +++    V+ + +   ++++L   G ++ IVF  T+    
Sbjct: 197 ETLTDPVTVRIGHLA-PLSTVEHAIYPVSHNQKAPLLLHLLGEAGKESVIVFTRTKHRAK 255

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L     +   L G LSQ++R  A+   R G  ++ +ATD+AARGID+  +  V++
Sbjct: 256 NLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATDIAARGIDVSQVAHVVN 315

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
            ++    E   HR GRTGRA R G +  FV  ++M
Sbjct: 316 FDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDM 350


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 191/368 (51%), Gaps = 26/368 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY   T +Q A +   L+ +D++  A TGSGKT +F L L   +  L 
Sbjct: 373 LPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELP 432

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+
Sbjct: 433 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLR 492

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD+ P     
Sbjct: 493 NGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILDALPVTNEK 552

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          + R+ +M++AT+  A+  +A+ Y +    V I S       ++ R
Sbjct: 553 PDSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQR 612

Query: 223 AVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             L+A  D R   + +IL     +   IVF + + +     + +    F  V L G  +Q
Sbjct: 613 VELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSVTLHGSKTQ 672

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 673 DQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGK 732

Query: 341 KGMSVFVI 348
            G+++  +
Sbjct: 733 SGVAITFL 740


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/333 (35%), Positives = 179/333 (53%), Gaps = 8/333 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           +   ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +   L   E  R 
Sbjct: 12  VATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERGRV 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL IAPTRELA Q+      L  +T +      GGV V+ + + L+ GA +VV
Sbjct: 72  R------ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
             PGRL DHI    +++S L+ +VLDEAD+M D+GF  DI  +L   P +R+ L+FSAT+
Sbjct: 126 ACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I TLA++   D V V + +     + + +    V    +   ++ +LR+   ++ ++
Sbjct: 186 PIDIRTLAQDILVDPVTVQVGTVAPAVT-VAHALYPVEQHLKTPLLLELLRHTDTESVLI 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +ATD+AARGID
Sbjct: 245 FTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  VI+ ++    E  +HR GRTGRA R G
Sbjct: 305 VSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 186/342 (54%), Gaps = 11/342 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  G+   T +Q       ++ +D++  A+TGSGKT+  G  +   L  +  
Sbjct: 167 PELLREVLSA-GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL--GYLIPGFLHLQRI 223

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P  L ++PTRELA Q+ +E    + ++  +   C+ GG     + RDL+ GA 
Sbjct: 224 RNDSRMGPTILVLSPTRELATQI-QEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGAD 282

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR+ LM++
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   +  +VNI +  E   +  I     +VA  ++   +  ILR    
Sbjct: 343 ATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP 402

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    + T+ L    F   A+ G+ SQ ER N L   R GR  V +ATD
Sbjct: 403 GSK-VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATD 460

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +
Sbjct: 461 VAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502


>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Meleagris gallopavo]
          Length = 482

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 187/351 (53%), Gaps = 15/351 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ +A  + G    T VQ + + P L+ +D L  A+TGSGKT AF L +   L    D
Sbjct: 11  PWLVEQA-RQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVL--SED 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +        L + PTRELA Q+  +   L    G+   V +GG+ +  +  +L    H+
Sbjct: 68  PY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRML 183
           V+ TPGRL DH+R     ++  LK +VLDEAD +L+ G   F  D+E IL++ P +R+ L
Sbjct: 124 VIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-- 241
           +FSAT++  +  L             ASE R   ++D R +LV  + +D  +V++++   
Sbjct: 184 LFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQ 243

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H   + I+F  T         +L +  F  VAL   + Q++R  AL   +    ++ I
Sbjct: 244 DEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILI 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 304 ATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQ 354


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 184/347 (53%), Gaps = 21/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--------------- 64
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +                 
Sbjct: 228 YTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGEALQAAKNSAQ 287

Query: 65  ENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN ++      P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 288 ENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLER 347

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + + +   +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 348 GCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGL 407

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ +D + + +        +I  + V V  +D+ + ++++L
Sbjct: 408 RQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 467

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR  + 
Sbjct: 468 NATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIL 527

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 528 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 574


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 196/379 (51%), Gaps = 22/379 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEAL+       YV  T VQ   +      +D++  AQTGSGKT AF   + S ++ + 
Sbjct: 153 LGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 212

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P       PLA+ ++PTRELA Q+  E      +TGV V V  GG  V+++ R+L+
Sbjct: 213 HIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELE 272

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I+       P 
Sbjct: 273 RGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPG 332

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++
Sbjct: 333 VRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDL 392

Query: 239 L---RYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L   R +G +      +VF  T+         L  + F    + G+ SQQER  AL+  +
Sbjct: 393 LHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFK 452

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G++      N
Sbjct: 453 TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDN 512

Query: 352 ---MQRRAERLFREANVSV 367
              M +    L +EAN  V
Sbjct: 513 NTTMAKPLAELMQEANQEV 531


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 186/342 (54%), Gaps = 11/342 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  G+   T +Q       ++ +D++  A+TGSGKT+  G  +   L  +  
Sbjct: 167 PELLREVLSA-GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL--GYLIPGFLHLQRI 223

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P  L ++PTRELA Q+ +E    + ++  +   C+ GG     + RDL+ GA 
Sbjct: 224 RNDSRMGPTILVLSPTRELATQI-QEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGAD 282

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR+ LM++
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   +  +VNI +  E   +  I     +VA  ++   +  ILR    
Sbjct: 343 ATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP 402

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    + T+ L    F   A+ G+ SQ ER N L   R GR  V +ATD
Sbjct: 403 GSK-VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATD 460

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +
Sbjct: 461 VAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502


>gi|329937165|ref|ZP_08286764.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329303446|gb|EGG47332.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 186/365 (50%), Gaps = 7/365 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  +   LS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 70  FEELDLPARLLTTLSAQGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 129

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R  P   PLAL + PTRELA QV   L       G+ +   +GGVS+ R+   L
Sbjct: 130 --THGQRAEP-RYPLALVLVPTRELAQQVTAALTPYAKALGLRLTTVVGGVSLGRQASAL 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD +    +
Sbjct: 187 RGGAEVVVATPGRLKDLIDRDDCRLDSVALTVLDEADQMTDMGFMPQVTALLDRTRPDGQ 246

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   +  L + Y  D V  ++       + +++  + V   D+      I   
Sbjct: 247 RLLFSATLDRNVDRLVRRYLHDPVVHSVDPAAGAVTTMEHHVLHVDDEDKHATTARIAAR 306

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG     IAT
Sbjct: 307 EG--RVIMFLDTKHAADRLAKKLLAVGVRAAALHGGKSQSQRTRTLAQFKDGNVTALIAT 364

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 365 NVAARGIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRLMA 424

Query: 362 EANVS 366
           +A ++
Sbjct: 425 DAGIT 429


>gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi]
 gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi]
          Length = 864

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 190/372 (51%), Gaps = 29/372 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 445 PEII-EIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 503

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 504 IERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLG 563

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 564 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 623

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA+ Y +    V I S  +     
Sbjct: 624 TEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTERT 683

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 684 NQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 743

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTGRAG
Sbjct: 744 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTGRAG 803

Query: 340 RKGMSVFVIPQN 351
           + G+++  + ++
Sbjct: 804 KTGVAISFVTKD 815


>gi|260220807|emb|CBA28741.1| hypothetical protein Csp_A08660 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 652

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/385 (35%), Positives = 194/385 (50%), Gaps = 58/385 (15%)

Query: 13  EALSERGYVNLTSVQEAILNPDL----REK-----DVLVSAQTGSGKTVAFGLALASTLL 63
           +A  + GY   T+VQ+  +   +     EK     D++VS+QTGSGKT AF L +  TLL
Sbjct: 71  QACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTAAFLLPVLHTLL 130

Query: 64  AE------------------------------------NDRFSPASAPLALAIAPTRELA 87
            +                                    N R   A  P AL + PTRELA
Sbjct: 131 TQQAEAEEAERAEYEQACADAAAKGEPAPKRAKRKDPTNPRNFKAPTPGALIVCPTRELA 190

Query: 88  VQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
            QV  + ++ +    G+ VA  +GG+    +   LQN A++VV TPGRL D  R   + +
Sbjct: 191 QQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSMQIKL 249

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
             ++ +V+DEAD MLDLGF DD+  I   +  +++ +MFSAT +P I  LA    ++  R
Sbjct: 250 DQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQTMMFSATFAPRIQQLAARVMREPQR 309

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYHGAKNAIVFCSTRASVSRF 260
           V I S   +H++I  + VL      DNA      + + LR      A+VF ST+      
Sbjct: 310 VTIDSPQEKHANI--KQVLFWA---DNAQHKRKLLDHWLRDTTINQAVVFASTQIECDGL 364

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V +  
Sbjct: 365 ANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNFG 424

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
           L    E+  HR GRTGRAGR G++V
Sbjct: 425 LPMKAEDYTHRIGRTGRAGRDGLAV 449


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L A T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + ++FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTMLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +  +L+   A   IV
Sbjct: 196 IKDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--NLEHKIELLKQLLKQEDATRTIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V    ++L         L GE++Q +R+  ++ + DGR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  VI+ ++  + +  LHR GRTGRAGRKG+++ ++
Sbjct: 314 IPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLV 352


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 178/357 (49%), Gaps = 7/357 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+ +  YV  T +Q   +   L+  DV+ SAQTG+GKT AF L +         R S
Sbjct: 14  LAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQ-------RLS 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+QV          T + V +  GGV   ++  DL+ G  I+  
Sbjct: 67  THGRLRCLILEPTRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSDLKRGMDILAA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+     ++  ++ +VLDE D MLD+GF  D+  I+   PK R+ L FSAT+ 
Sbjct: 127 TPGRLLDHLGQGNCSLEDVEILVLDEVDRMLDMGFLPDVRKIVQRCPKARQTLFFSATLP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  LA     +  +V I         + +    V  S + + +  +L     K+ ++F
Sbjct: 187 PELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVASQKFDLLQLLLERTEFKSVLIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C TR    R    L      V  +  + SQ+ER  AL   + G+  V +ATD+AARG+D+
Sbjct: 247 CRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVATDIAARGLDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             +  VI+ ++  NPE+ +HR GRTGRA   G +  ++ +   R A  + R   ++V
Sbjct: 307 AGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVRDARSIERYMGMAV 363


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 188/367 (51%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ + E + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L + +  L 
Sbjct: 397 FPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQGLP 456

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R   A   P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L+ 
Sbjct: 457 KIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRL 516

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P      
Sbjct: 517 GCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNLKP 576

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 577 DTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 636

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    +V  +++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 637 TEQIVHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 696

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 697 GQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 756

Query: 339 GRKGMSV 345
           G+ G ++
Sbjct: 757 GKTGCAI 763


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 186/342 (54%), Gaps = 11/342 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  G+   T +Q       ++ +D++  A+TGSGKT+  G  +   L  +  
Sbjct: 167 PELLREVLSA-GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL--GYLIPGFLHLQRI 223

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P  L ++PTRELA Q+ +E    + ++  +   C+ GG     + RDL+ GA 
Sbjct: 224 RNDSRMGPTILVLSPTRELATQI-QEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGAD 282

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR+ LM++
Sbjct: 283 IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYT 342

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   +  +VNI +  E   +  I     +VA  ++   +  ILR    
Sbjct: 343 ATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEP 402

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    + T+ L    F   A+ G+ SQ ER N L   R GR  V +ATD
Sbjct: 403 GSK-VIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATD 460

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +
Sbjct: 461 VAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 502


>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 423

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 178/337 (52%), Gaps = 6/337 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   +   GY   T +Q   +   ++ +DV+  AQTG+GKT AF L +   L+  
Sbjct: 7   NLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPILQRLMN- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL +APTRELA Q+   +  +   T +      GGVS + +   L+ GA
Sbjct: 66  ----GPGKMVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL D +     ++S ++  VLDEAD M D+GF  +I  I    P+KR+ L+F
Sbjct: 122 EIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LAK+   D + + I ++    S + +    V    +   ++ +L+    +
Sbjct: 182 SATMPADIRSLAKDILHDPLTIRIGNDI-PVSTVSHTLYPVEQHLKTALLIKLLKETDTE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +R    + +  F V +L G+LSQ +R  AL   R+G+ R+ IATD+AA
Sbjct: 241 SVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILIATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RGID+  +  VI+ ++    E   HR GRTGRA + G
Sbjct: 301 RGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSG 337


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 197/354 (55%), Gaps = 12/354 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + L   +  + +   
Sbjct: 14  ILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDCNNIQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V  +   G  S+  +  +L+   HIVV 
Sbjct: 74  ------ALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVHIVVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + PK++ + +FSATI 
Sbjct: 128 TPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATID 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAK 245
             I  + + Y  D   +NI  EN   ++   R +   ++  + R+  I+   ++     K
Sbjct: 188 EEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ +  + +++DVA+
Sbjct: 247 SVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  ++  E +
Sbjct: 307 RGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 181/350 (51%), Gaps = 15/350 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+   L   GY   T VQ+  +      +D++  AQTGSGKT AF + + S +L      
Sbjct: 228 VVTNNLRLAGYTKPTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIISRVLETGPVE 287

Query: 70  SPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
            P +A        P+ L +APTRELA Q+  E    +A    + A C+ GG     + RD
Sbjct: 288 VPETARRMEGKQFPVCLILAPTRELASQIFAEAR-KFAYRAKIRACCVYGGTDFRSQFRD 346

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SS 176
           LQ G  ++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I  I++      
Sbjct: 347 LQRGCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRIVEQDTMPP 406

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ LMFSAT    I  LA+++  D V +++        +I  +   V   ++   ++
Sbjct: 407 PGVRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENIFQKVYWVQEHEKRQTLL 466

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++     K   +VF  T+         L    F   ++ G+ +Q++R  AL   RDG  
Sbjct: 467 DLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALASFRDGYT 526

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G KG ++
Sbjct: 527 PILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQAI 576


>gi|320011360|gb|ADW06210.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 571

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 190/362 (52%), Gaps = 6/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L   
Sbjct: 68  DMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LART 124

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S   APLAL + PTRELA QV   L        + VA  +GG+S+ R+   L+ GA
Sbjct: 125 AGRRSEPHAPLALVLVPTRELAQQVTDALTPYATAVNLRVATVVGGMSISRQSGALRRGA 184

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L    P  +RML 
Sbjct: 185 EVLVATPGRLKDLIERGDCRLDAVSITVLDEADQMADMGFMPQVVALLKQVEPDGQRML- 243

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L K +  D V  ++       + +++  + VA      A+   +     
Sbjct: 244 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVADETDKKAVATRIAARDG 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+    RF K L     +  AL G  SQ +R+  L   ++G+    +AT+VA
Sbjct: 304 R-VIMFVDTKRGADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVA 362

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL ++A 
Sbjct: 363 ARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKRDMTRLMQDAG 422

Query: 365 VS 366
           ++
Sbjct: 423 IA 424


>gi|196248942|ref|ZP_03147642.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211818|gb|EDY06577.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 436

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 189/351 (53%), Gaps = 17/351 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P VI EA+    +   T +QE I+   LR + ++  +QTG+GKT A+       LL
Sbjct: 9   FPFQPFVI-EAIQALRFYKPTEIQERIIPKALRGESMVGQSQTGTGKTHAY-------LL 60

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRER 118
              ++  P  A + A+  APTRELA Q+  E   +     K  ++VA C IGG    +  
Sbjct: 61  PIIEKIDPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKAL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L    HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    PK
Sbjct: 121 EKLHVQPHIVIGTPGRINDFIREQALDVHTACTLVVDEADLMLDMGFITDVDQIAARMPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IV 236
           + +ML+FSATI   +    K Y ++   + +  +   + +I++  VL+ L  R+    + 
Sbjct: 181 ELQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEH--VLIPLRGREKVKLLY 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +    AIVF +TR         LAE   +V  L G+L+ +ER   +  +RD   +
Sbjct: 239 DVLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +
Sbjct: 299 YVVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATI 349


>gi|293332577|ref|NP_001169296.1| hypothetical protein LOC100383160 [Zea mays]
 gi|224028479|gb|ACN33315.1| unknown [Zea mays]
          Length = 508

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 194/352 (55%), Gaps = 23/352 (6%)

Query: 38  KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +D +  A TGSGKT+AFG+ AL         +    + P  L ++PTRELA Q+   L  
Sbjct: 126 RDFIGIAATGSGKTIAFGVPALMHIRKKVGGKAGKKAVPRCLVLSPTRELAQQIADVLSE 185

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             A  G+      GG     +   L++G  IV+GTPGR+ D I      ++ +  VVLDE
Sbjct: 186 AGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGTPGRMKDLIEMGVCCLNEVSFVVLDE 245

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQ 215
           AD MLDLGF  ++  IL  +   R+M+MFSAT   A+  LA+ +   + ++V I SE+  
Sbjct: 246 ADRMLDLGFEPEVRAILSQTSSVRQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLA 305

Query: 216 HSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQ 270
            ++ D   ++  L D  RD+ ++ +L +YH A++   +VF   +   +R   +L    ++
Sbjct: 306 -ANHDVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWK 364

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            V++ G+ +Q +R+ AL + ++G+  + IATDVA+RG+D+PD+E+VI+       E+ +H
Sbjct: 365 AVSVHGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVH 424

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           R GRTGRAG+KG+            A   F +AN ++  E    V  +RE D
Sbjct: 425 RIGRTGRAGKKGV------------AHTFFTQANKALAGE---LVNVLREAD 461


>gi|290963039|ref|YP_003494221.1| DEAD-box RNA helicase [Streptomyces scabiei 87.22]
 gi|260652565|emb|CBG75698.1| probable DEAD-box RNA helicase [Streptomyces scabiei 87.22]
          Length = 497

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 192/361 (53%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 75  DMPRQLLAELHRQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 134

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PL L + PTRELA QV   L       G+ +A  +GG+S+ R+   L+ GA
Sbjct: 135 --RAEPRH-PLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGMSIGRQAGMLRAGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EVVVATPGRLKDLIERGECRLNQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A + I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHLLHVHGADKHAATIEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R  + L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 310 -RVIMFLDTKHAVDRLAQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R  +RL   A 
Sbjct: 369 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRSMDRLMAAAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 193/368 (52%), Gaps = 14/368 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   ++ +G+   T +Q       L  +DV+  AQTGSGKT+A+   L S +  +N
Sbjct: 86  FPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAY--VLPSIIHIKN 143

Query: 67  DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL + PTRELA QV   +   + +   +   CI GG     + R+L  G
Sbjct: 144 QPPLRHGDGPIALILCPTRELAQQV-HSVSTTFGRLARINCACIYGGSPKGPQLRELSRG 202

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I V TPGRL D +  +  N++    +VLDEAD MLD+GF   I+ I+ S    R+ +M
Sbjct: 203 VEICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPRQTVM 262

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV----NIL 239
           +SAT    I TLA+ + +D V++NI S +   + +I     +    ++++ +     +IL
Sbjct: 263 WSATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLLSDIL 322

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  T+      ++ L    + V+ + G+  Q ER   L   R GR  V I
Sbjct: 323 R-QDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIPVLI 381

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE- 357
           ATDVAARG+D+ D++LVI+ +  +N E+ +HR GRT R+G+ G +  F    N+++    
Sbjct: 382 ATDVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQSPNL 441

Query: 358 -RLFREAN 364
             L REAN
Sbjct: 442 IALLREAN 449


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 175/336 (52%), Gaps = 10/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  A   +  N R +       +
Sbjct: 36  GFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIG-ALQRIDPNQRKTQV-----I 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +AP RELA Q+   ++ +     +    CIGG S    R   + G HI++ TPGRL D 
Sbjct: 90  ILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETREKCKQGVHIIIATPGRLIDM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P   ++ +FSAT    I  L+K
Sbjct: 150 MKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPGDIQIALFSATFPQEIIELSK 209

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRA 255
            + ++     I  +  Q +    R   +A+   D     +V + +      +I+FC+++ 
Sbjct: 210 QFLREGT-AKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLVELYKNLTVSQSILFCNSKK 268

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V      L    F V  +  ++ Q+ER   +Q  + G AR+ ++TD+  RGID+  L L
Sbjct: 269 TVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAARILVSTDLMGRGIDVQQLSL 328

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           VI+ E     E  +HR GR GR GRKG+++ ++ Q 
Sbjct: 329 VINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQ 364


>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
 gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
          Length = 605

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 191/350 (54%), Gaps = 6/350 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A    GY + T +Q A++   L  +D+   A TGSGKT AF L     +L  
Sbjct: 156 NLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLERMLHR 215

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P +A   L + PTRELAVQV +  E L   T V  A+ +GG+S + +   L++  
Sbjct: 216 GPK--PVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLRSRP 273

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+R    + +  L  +VLDEAD +L++GF ++I  I+   PK+R+ ++
Sbjct: 274 EVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQTML 333

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT++  +  LA+   K+  R++   I +     ++   R    A + ++  ++ I+  
Sbjct: 334 FSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLAIVAR 393

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  T+    R   ++  H  +   L G+L+Q +R  AL+  R G A   +AT
Sbjct: 394 TFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEATHMVAT 453

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DVAARG+D+  ++ V+  +      + LHR GRT RAGRKG ++  + ++
Sbjct: 454 DVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEES 503


>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
 gi|74659615|sp|Q6C024|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica]
          Length = 575

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 194/370 (52%), Gaps = 24/370 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
           + IP ++ + +S  GY   T +Q A +   L  +DV+  A+TGSGKT +F + L S +  
Sbjct: 168 KEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICE 227

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + D  S  + P  L +APTRELA+Q+  E     A  G  V   +GG S   +   +Q
Sbjct: 228 LPKLDERSKVNGPYGLILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQ 287

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            GA ++V TPGRL D I  + L ++    VV+DEAD M+D+GF + ++ +L S P     
Sbjct: 288 EGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAK 347

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          + R+ +M++AT+  AI  LAK Y +    V I S  +  S +   
Sbjct: 348 PDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQL 407

Query: 223 AVLVALSD-RDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +   + R   +++I+     +  I VF + +      +  L    ++   + G   Q
Sbjct: 408 VEFLNTDEKRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQ 467

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  A+Q ++ G   V +ATDVA RG+D+P++ LV++ ++++N E+  HR GRTGRAG+
Sbjct: 468 EQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGK 527

Query: 341 KGMSVFVIPQ 350
           +G +V  + Q
Sbjct: 528 RGTAVTFLGQ 537


>gi|300705325|ref|YP_003746928.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum CFBP2957]
 gi|299072989|emb|CBJ44346.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum CFBP2957]
          Length = 435

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/324 (38%), Positives = 180/324 (55%), Gaps = 8/324 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L   D++  A+TGSGKT AF LAL + L A   RF       A+ + P
Sbjct: 1   MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFALALLAQLDAR--RFDVQ----AMVLCP 54

Query: 83  TRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L  A+  V V    GG  +  +   L++GAH+VVGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGAHVVVGTPGRIMDHLER 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+FSAT    I  L++   
Sbjct: 115 GNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLFSATYPDGIAKLSRQIL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           ++   V +  E    S I  R   V    R +A+  +L+++   + + FC+T+       
Sbjct: 175 RNPKEVKL-EERHDDSKIRQRFYEVTDDKRLHAVGLLLKHYRPVSTLAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL       + L GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLRAQGIHALTLHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSV 345
           + +PE  +HR GRTGRA + G ++
Sbjct: 294 TPDPEVHVHRIGRTGRADQDGWAL 317


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 192/352 (54%), Gaps = 9/352 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 57  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ+ A HI+VGTPGR+ D
Sbjct: 111 MLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHIIVGTPGRVFD 170

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAITTL 196
            +  + L+  ++K  VLDEADEML  GF+D I  I         ++++ SAT+   +  +
Sbjct: 171 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKVLSMNAQVVLLSATMPADVLEV 230

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
            K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR 
Sbjct: 231 TKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRR 290

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + L
Sbjct: 291 KVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 350

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           VI+ +L +N EN +HR GR GR G KG+++ ++ ++ +R  + +    N +V
Sbjct: 351 VINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKDIETFYNTTV 402


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 180/337 (53%), Gaps = 8/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+++GY   T++Q+  +   + E+DVL SA TG+GKT AF L     LL +  R  P 
Sbjct: 17  KALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAIQHLL-DYPRRKPG 75

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            AP  L + PTRELA+QV  + E L A T + +A   GGV+             IVV TP
Sbjct: 76  -APRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHGEVFNKNQDIVVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---HGAKNAI 248
            +   A     D V ++     R+   I  +         ++ I  + R+         I
Sbjct: 195 LLVDFAGRLLTDPVEIDAEPSRRERKKI--QQWFYHADSNEHKIKLLARFIEEEKVSRGI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V   ++ L +   +   L GE++Q +R+NA+  +++G   V +ATDVAARGI
Sbjct: 253 VFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ D+  V++ +L  + +  LHR GRT RAG+KG++V
Sbjct: 313 DIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAV 349


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 192/354 (54%), Gaps = 12/354 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I +ALSE G+   T +QE  +   L  +D++ SAQTG+GKT AFGL +       
Sbjct: 34  GLSEPINKALSELGFEKPTPIQEQAIPIVLEGRDLIGSAQTGTGKTAAFGLPILQ----- 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P      L + PTRELA QV   L       G+ + +  GGV    + + ++ GA
Sbjct: 89  --RIVPGKPFQCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMMEGGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKKRRMLM 184
            I+V TPGRL DH+    L++  +  +VLDE D MLD+GF  D++ I+ +    +R+ L+
Sbjct: 147 EIIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSAERQTLL 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV--LVALSDRDNAIVNILRYH 242
           F+AT+  AI TL     K+   V I  +NR  ++    A   +V        +  + R H
Sbjct: 207 FTATMPAAIKTLTGWVLKNPAVVEIG-KNRSAAETVSHAFYPVVERQKYKLLLELLERTH 265

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ ++F  T+ +    T+ L     +V AL  + SQ ER+ AL+  +DGR  V +ATD
Sbjct: 266 -YESVLIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVLVATD 324

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +AARG+D+  +  VI+ ++  + E+ +HR GRTGRA ++G +  ++ ++  + A
Sbjct: 325 IAARGLDIAGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNA 378


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/382 (32%), Positives = 201/382 (52%), Gaps = 28/382 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +    
Sbjct: 233 LTEIIKNSINLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQIYESG 292

Query: 67  DRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               P +A       PL L +APTRELA Q+  E      ++ +  AV  GG ++  + R
Sbjct: 293 PPPLPPNASGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGGSNMVEQLR 352

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSS 176
           +L  G H++V TPGRL D + RGK + + + + +VLDEAD MLD+GF   I  I+  D+ 
Sbjct: 353 ELDRGCHLLVATPGRLVDMLGRGK-IGLHNCRYLVLDEADRMLDMGFEPQIRRIVEQDTM 411

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   ++ + 
Sbjct: 412 PPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVEEHEKRSY 471

Query: 235 IVNILRYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           ++++L   GA N          +VF  T+       + L    + V ++ G+ SQ ER +
Sbjct: 472 LLDLL---GACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQHERED 528

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  R G   + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  G++ 
Sbjct: 529 ALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNLGLAT 588

Query: 346 FVI---PQNMQRRAERLFREAN 364
                  QN+ R    L  EAN
Sbjct: 589 SFFNSKNQNLVRDLVSLLVEAN 610


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 188/358 (52%), Gaps = 26/358 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA   
Sbjct: 148 PAVM-ENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGP 206

Query: 67  DRFSPAS--------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           D   P +         P AL ++PTRELA+Q+ +E      K+ +  A+  GG   +R++
Sbjct: 207 DMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQ 266

Query: 119 RD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
            + L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I  I+    
Sbjct: 267 VNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGM 326

Query: 177 -PKK-RRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLV-A 227
            PK  R   MFSAT    I  LAK++ KD        RV   SEN     I+ R + V  
Sbjct: 327 PPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN-----IEQRLLWVNE 381

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +  R N +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L
Sbjct: 382 MEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 441

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ R G+  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++ 
Sbjct: 442 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 499


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/403 (31%), Positives = 204/403 (50%), Gaps = 20/403 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++  P  + E + + G+   T +Q       ++ +D++  A+TGSGKT+++ L  
Sbjct: 98  VKSFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISY-LLP 156

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +      +P   P+ L +APTRELAVQ+ +E    +  +  + + CI GGV    +
Sbjct: 157 AIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEAS-KFGSSSKIKSTCIYGGVPKGPQ 215

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+    
Sbjct: 216 VRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR 275

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ L +SAT    +  L+K +  +  +V I S + + +  I     +++ S + N +V
Sbjct: 276 PDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLV 335

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +L         +VF  T+    + T+ L    +  +++ G+ SQ ER   L   R G++
Sbjct: 336 KLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKS 395

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R 
Sbjct: 396 PIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARF 455

Query: 356 AERL---FREANVSVVWE----------PAPSVEAIRERDAQR 385
           A+ L     EA   V  E          P P +   R+R ++R
Sbjct: 456 AKELSNILEEAGQKVSPELASMGRSTAPPPPGLGGFRDRGSRR 498


>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
 gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
          Length = 750

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%)

Query: 2   KIFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           K+F N     + + + +AL + GY   + +Q A +   L  KD++  A TGSGKT AF +
Sbjct: 234 KVFNNFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMI 293

Query: 57  ALASTLLAENDRFSPA--SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGG 111
            +   L+     + PA  ++   + +APTRELA+QV   G++L       G+   + +GG
Sbjct: 294 PIIERLI-----YKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYV--NGLTFGIAVGG 346

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIE 170
           +++ ++ + L+    IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D+I 
Sbjct: 347 LNLRQQEQILKTRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEIN 406

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I+   P KR+ ++FSAT++  I  L     K  VRV   ++  Q +    +   V +  
Sbjct: 407 EIMHLLPSKRQTMLFSATMNSKIKQLVSLSLKRPVRV--MTDPPQQAVSKLQQEFVRIRK 464

Query: 231 RDNAIVNILRY-----HGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           RD+   + L Y      GA  K  +VF S +  V R   +L      V  L G L+Q++R
Sbjct: 465 RDHLKPSTLFYLIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQR 524

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             ++   +     V I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G 
Sbjct: 525 LQSINKFKSLEVPVLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGR 584

Query: 344 SVFVIPQNMQRRA 356
           SV  + +  Q R+
Sbjct: 585 SVSFVGETSQERS 597


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 191/358 (53%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 143 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQ- 201

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E++  + ++  +   C+ GGV    + RDL  G 
Sbjct: 202 PLLAPGDGPIVLVLAPTRELAVQIKQEID-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 260

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 261 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMW 320

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++ +D ++VNI S +    H       V+  +  RD  I ++ +   
Sbjct: 321 SATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIKHLEKVME 380

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L +  +  +++ G+  Q ER   L   +  ++ + +AT
Sbjct: 381 NKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAKSPIMVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q++A  L
Sbjct: 441 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQKQARDL 498


>gi|125556618|gb|EAZ02224.1| hypothetical protein OsI_24319 [Oryza sativa Indica Group]
          Length = 620

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 180/353 (50%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  AL  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 181 LPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEE 240

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRER 118
                 P   P  L + P+RELA Q    +E   A         +   +CIGGV +  + 
Sbjct: 241 ILMPIVPGEGPFGLIVCPSRELARQTHEVIELFLAPLMEAGYPEIRPLLCIGGVDMRTQM 300

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 301 EVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKA 360

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     + VN+      + D+      V    R   ++  
Sbjct: 361 QRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLEC 420

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G    +ER +A +  +     V 
Sbjct: 421 LQ-KTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVL 479

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D+PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 480 VATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKN 532


>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
          Length = 478

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 178/333 (53%), Gaps = 11/333 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ   +   L  +D +   +TGSGKT AF L +  TL  +           AL + PT
Sbjct: 33  TPVQINCIPAILDGRDCIGCDRTGSGKTFAFALPIVQTLSKD------PYGIYALVLTPT 86

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  + + +     + ++V +GG+ +  +  +L N  HIV+ TPGRL DH+   K
Sbjct: 87  RELAYQIADQFQIIGKPINLRMSVIVGGMGMMDQGIELSNHPHIVIATPGRLADHLESCK 146

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
             +   +K +V+DEAD +L+  F + ++ I  + P+KR+ L+FSATI+  +  L +    
Sbjct: 147 TFSFKTIKYLVMDEADRLLEGNFDEQLQIIFQALPEKRQTLLFSATITDTLNKLREVALN 206

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKNAI-VFCSTRASVS 258
                +   E     ++D R +LV    +D  +V+++   R    K +I VF  T  S  
Sbjct: 207 KPFMWSAPVETATVEELDQRYILVPADFKDGYLVHVVQNFREEKPKGSIIVFTDTCRSCQ 266

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             +  L E  FQ + L   +SQ+ER   L   R    ++ +ATDVA+RG+D+P ++L+++
Sbjct: 267 ILSMTLLELGFQSLCLHSMMSQRERIATLTKFRSNTVKILVATDVASRGLDIPTVQLIVN 326

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             + SNP+  +HR GRT RAGR G S+ +I  N
Sbjct: 327 HNVPSNPKEYVHRVGRTARAGRGGFSLTLITPN 359


>gi|224073176|ref|XP_002304009.1| predicted protein [Populus trichocarpa]
 gi|222841441|gb|EEE78988.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 185/348 (53%), Gaps = 21/348 (6%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAENDRFS---PASA----PLALAIAPTRELAVQVGRE 93
           +  AQTGSGKT AF   + S ++   D+ +   P  A    PLAL ++PTREL++Q+  E
Sbjct: 1   MACAQTGSGKTAAFCFPIISGIMKMQDQSAQRPPRGARTVYPLALILSPTRELSMQIHEE 60

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
                 +TGV V V  GG  +H++ R+L+ G  I+V TPGRL D +    +++  +K + 
Sbjct: 61  ARKFSYQTGVKVVVAYGGAPIHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLA 120

Query: 154 LDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           LDEAD MLD+GF   I  I++      P  R+ ++FSAT    I  LA ++    + + +
Sbjct: 121 LDEADRMLDMGFEPQIRKIVEQMDMPRPGLRQTMLFSATFPKEIQRLASDFLSTYIFLAV 180

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKN----AIVFCSTRASVSRFTK 262
                    I  R   V   D+ + ++++L   R +G +      +VF  T+        
Sbjct: 181 GRVGSSTDLIVQRVEFVYEPDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEH 240

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L  + F   ++ G+ SQQER  AL+  + G   + +ATDVAARG+D+P +  V++ +L 
Sbjct: 241 WLCINGFPATSIHGDRSQQEREQALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLP 300

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367
           ++ ++ +HR GRTGRAG  G++     +   +M R    L +EAN  V
Sbjct: 301 NDIDDYVHRIGRTGRAGNSGLATAFFNEGNASMARPLSELMQEANQEV 348


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 30/375 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 302 LPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 361

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++    P AL +APTREL  Q+  E +      G  V   +GG S+  +   L+NG
Sbjct: 362 PLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAYALRNG 421

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I+V TPGRL D +  + L  S     ++DEAD M+D GF + +  ILD+ P       
Sbjct: 422 AEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPD 481

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             + R+ +M++AT+ P +  +AK Y +    V I +       +
Sbjct: 482 TDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTV 541

Query: 220 DYRAVLVALSD-RDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   VA  D R   +  IL     K  I VF + + +     + +    F  V L G 
Sbjct: 542 EQRVEFVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGFSAVTLHGS 601

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R+G+  + +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 602 KTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 661

Query: 338 AGRKGMSV-FVIPQN 351
           AG+ G+++ F+ P++
Sbjct: 662 AGKSGVAITFLGPED 676


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 189/341 (55%), Gaps = 9/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E  S  G+ + T +Q       L+ +D++  A+TGSGKT+  G  + + +L    
Sbjct: 507 PEILREIYSA-GFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTL--GYLIPAFILLRRR 563

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +  + P  + +APTRELA Q+  E       + V  A   GG S + + ++L  GA +
Sbjct: 564 RNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADV 623

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LM++A
Sbjct: 624 VVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTA 683

Query: 188 TISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           T    +  +A +   + V+VNI S  E   +  I     +V+  ++   +  ILR    G
Sbjct: 684 TWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERG 743

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +K  I+FCST+    +  + +  + F    + G+ SQ ER   L   R G++ + +ATDV
Sbjct: 744 SK-VIIFCSTKKLCDQLARSIGRN-FGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDV 801

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           AARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S
Sbjct: 802 AARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVS 842


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +++ GY   T +Q A +   ++ +D++  A TGSGKT +F L L   +  L 
Sbjct: 255 LPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELP 314

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S   +   L+
Sbjct: 315 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLR 374

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 375 NGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 434

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I S      
Sbjct: 435 PDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVD 494

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   +A  D+    +  +   G      IVF + + +     + + +  F  V L 
Sbjct: 495 TVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLH 554

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G+  V +ATD+A RGID+PD+ LVI+  +++  E+  HR GRT
Sbjct: 555 GSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRT 614

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 615 GRAGKSGVAI 624


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 239 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 297

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 298 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 356

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 357 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 416

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 417 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 476

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 477 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 536

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 537 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 596

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 597 KVLEEANQAI 606


>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
 gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
          Length = 441

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 186/345 (53%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL ++GY   T++Q+  + P +  +DVL SA TG+GKT AF L     LL ++ 
Sbjct: 14  PELL-QALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQHLL-DHP 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+             +
Sbjct: 72  RRKPGP-PRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQNHGEVFNTNQDL 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++   +FSA
Sbjct: 131 VVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKYTWLFSA 190

Query: 188 TIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T+    +   A+    D V+++     R+   I    Y A    L  +   +  ++    
Sbjct: 191 TLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHAD--NLEHKTKLLARLISEFE 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +IVF   R SV   ++ L +   +   L GE++Q +R+ A+  ++DG   V +ATDV
Sbjct: 249 IERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVLVATDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG +V ++
Sbjct: 309 AARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLV 353


>gi|50420521|ref|XP_458797.1| DEHA2D07744p [Debaryomyces hansenii CBS767]
 gi|74659356|sp|Q6BSM3|SPB4_DEBHA RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|49654464|emb|CAG86941.1| DEHA2D07744p [Debaryomyces hansenii]
          Length = 614

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 197/371 (53%), Gaps = 30/371 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------- 63
           I EA+   GY  +T VQ + +      KDV+V A TGSGKT+AF + +   L        
Sbjct: 21  IKEAIKSLGYPTMTPVQASTIPLFSGNKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYNID 80

Query: 64  --AENDRFSPASAPLALAIAPTRELAVQV----GRELEWLYA-KTGVVVAVCIGGVSVHR 116
              EN         L++ ++PTRELA Q+     + LE++   K  +   + +G +S  R
Sbjct: 81  EEGENPEPVKKGHMLSIILSPTRELAKQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVR 140

Query: 117 ERRD--LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           E  D  L N  HI++ TPGRL D +    +  + ++  VLDEAD++LD+ F  D+  IL 
Sbjct: 141 EDIDYFLTNKTHILIATPGRLLDFLSSNYVKTNSVEIAVLDEADKLLDISFERDVIKILK 200

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDR 231
             PK+RR  +FSATIS A  T+ +    + V++ + S+N ++   + ++   + V    +
Sbjct: 201 QLPKQRRTGLFSATISSAGDTIFRTGMANPVKIVVKSKNSKNAAPTSLNVSYMHVEPETK 260

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL-------AEHLFQVVALSGELSQQERS 284
            +A++ +++ +  +  IV+  T  SV  F  V         E  ++  +L G+LS + R 
Sbjct: 261 ISALIALIKDYRFQKCIVYFPTCTSVKHFYSVFQTLVNVEEEDRYKFFSLHGQLSTKPRL 320

Query: 285 NALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             LQ   +G       V + TDVAARGID+PD++LVI  +  ++P+   HRSGRTGRA +
Sbjct: 321 KTLQNFSEGDSMLHKHVLLTTDVAARGIDIPDVDLVIQLDPPTDPDVFFHRSGRTGRANK 380

Query: 341 KGMSVFVIPQN 351
            G ++ ++  N
Sbjct: 381 VGQAIVMLNNN 391


>gi|332289421|ref|YP_004420273.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
 gi|330432317|gb|AEC17376.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
          Length = 399

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 186/344 (54%), Gaps = 9/344 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL + G    T +Q   L   L  KD+   AQTG+GKTVAF  AL   L+ E
Sbjct: 15  NLHPNILSALQKMGMTYCTPIQADSLPYSLAGKDIAGQAQTGTGKTVAFLTALFQKLIQE 74

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                PAS     A+ +APTRELAVQ+  + +     TG+ + +  GG    ++ + LQ 
Sbjct: 75  -----PASHHTLAAIILAPTRELAVQIYHDAQHFAQTTGLKLGLAYGGDGYDKQLQALQQ 129

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRR 181
           G +I++GT GR+ D+++ + +++ H++ VVLDEAD M DLGF  DI +IL     P +R 
Sbjct: 130 GVNILIGTTGRVIDYMKQRIISLDHVQVVVLDEADRMFDLGFIRDIRYILRHCPPPSERL 189

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+S  +  LA     D   + I S  +    +       +  D+   ++ +L  
Sbjct: 190 TMLFSATLSFKVRELAFEDMNDPHYIEIESAYKTADTVKEELFYPSNQDKMRLLLTLLEE 249

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F +T+    +  + L     +   L+G++ Q++R   L+   +G+  + +AT
Sbjct: 250 EWPERCIIFANTKHQCEKIWQYLLADQLRAGLLTGDVPQKKRFALLEQFANGQLDILVAT 309

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 310 DVAARGLHIPQVTHVFNYDLPDDYEDYVHRIGRTGRAGENGISI 353


>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 521

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/353 (35%), Positives = 189/353 (53%), Gaps = 12/353 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           + GY   T +Q   +   L   D++  AQTGSGKT AF   +   L+ +         P+
Sbjct: 84  KHGYTEPTGIQRQAVPVALSGHDLIGIAQTGSGKTAAFLWPMLVHLM-DQPELERGDGPI 142

Query: 77  ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            L +APTRELA Q+  E + +  A  GV V V  GGVS + + ++L+ G  I+V TPGRL
Sbjct: 143 GLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYGGVSKNDQFKELRAGVEILVATPGRL 202

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I+ K  N++ +  +VLDEAD+ML+LGF   +  I D     R+ L+FSAT    I  
Sbjct: 203 IDLIKMKATNLTRVTYLVLDEADQMLNLGFEPQVRSICDHIRPDRQTLLFSATFRKRIEH 262

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-----GAKNAIVF 250
           L +    +  R++I +  + +SDI    V++   + D      L  H          +VF
Sbjct: 263 LVRALLNNPTRISIGNVGQSNSDITQIPVVL---ENDGVKFGWLTAHLPRLVAQGPVLVF 319

Query: 251 CSTRASVSRFTKVL-AEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            S +A V      L A  +  VV AL G+L Q +R   L+  + G++RV ++TDVA+RG+
Sbjct: 320 VSRKAGVDELASNLSAAQIASVVGALHGDLMQAQRDQVLKEFKSGKSRVLVSTDVASRGL 379

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  ++ VI+ ++S + ++ +HR GRTGRAG KG +  +I     R A  L +
Sbjct: 380 DIKGVKTVINYDVSKDIDSYVHRIGRTGRAGEKGTAYTLITMQEDRFASDLVQ 432


>gi|311997|emb|CAA48790.1| eukaryotic translation initiation factor 4A (eIF-4A) [Drosophila
           melanogaster]
          Length = 402

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/313 (34%), Positives = 177/313 (56%), Gaps = 8/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A    +L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIA----ILQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRK-LRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 222 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 DQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 342 NYDLPSNRENYIH 354


>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 428

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 171/332 (51%), Gaps = 6/332 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+S  G+   T +Q+  +   L  +D+L  AQTG+GKT AF L     L+      +
Sbjct: 12  ITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILPTVQHLMR-----T 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL IAPTRELA Q+      +   T +      GGVS   +   L+ G  IVV 
Sbjct: 67  QAHHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQITKLRGGVDIVVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D +  K +++S +  ++LDEAD M D GF  DI  IL   P +R+ L+FSAT+ 
Sbjct: 127 CPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRLPAERQSLVFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA++   D V V I +  R    I +R   V    + + ++ +L+       ++F
Sbjct: 187 DEIRHLAEDILTDPVTVQI-NPTRSVQSISHRLYAVEQEQKTDLLLQLLKDEAMATTLIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       + LA+  F+  +L G LSQ  R  AL   + G   + +ATD+AARGID+
Sbjct: 246 TRTKHKAKNLAQKLAQSGFKATSLQGNLSQNRRQQALDGFKTGAFTILVATDIAARGIDV 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             +  VI+ ++    E  +HR+GRTGRA R G
Sbjct: 306 NGISHVINYDMPDTAEAYIHRTGRTGRAARTG 337


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 176/323 (54%), Gaps = 16/323 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP----------ASAPLALAIAPTRELA 87
           +D++  AQTGSGKT  F   + S         +P           + P AL +APTREL 
Sbjct: 198 RDLMACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPRHMHKKAYPTALVLAPTRELV 257

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNI 146
            Q+  E +    ++ V   V  GG  +  + R+++ G  ++V  PGRL D I RGK +++
Sbjct: 258 SQIYDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRGK-VSL 316

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQK 202
            ++K +VLDEAD MLD+GF   I  I+  S      +R+ LMFSAT    I  LA+++ K
Sbjct: 317 ENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNIQMLARDFLK 376

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D + +++        +I  +   V   D+ +A+++IL   G    +VF  T+        
Sbjct: 377 DYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKGLTLVFVETKRGADYLCD 436

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
           VL    F   ++ G+ SQ++R  AL+M RDG   + +AT VAARG+D+P++  V++ +L 
Sbjct: 437 VLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVTHVVNYDLP 496

Query: 323 SNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++ +HR GRTGRAG  G++ 
Sbjct: 497 TDIDDYVHRIGRTGRAGNTGIAT 519


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV   +Q+G+GKT  F +++   L  +           AL
Sbjct: 35  GFEKPSAIQQRAIKQIIKGRDVSAQSQSGTGKTATFCVSVLQCLDIQ------VRETQAL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 89  ILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 149 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 209 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 268

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV A G+D+P + L+I
Sbjct: 269 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAGGLDVPQVSLII 328

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 329 NYDLPNNRELYIHRIGRSGRYGRKGVAI 356


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 194/376 (51%), Gaps = 32/376 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++P+ +   L +  Y   +++Q A +   L+  D++  A+TGSGKT AF + L + +  L
Sbjct: 262 SLPEKVQATLKKVKYKEPSAIQRAAIPLLLQRNDIIGIAETGSGKTAAFVIPLVTHISRL 321

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D  +    P A+ +APTRELA Q+  E        G+     +GG +   +   +  
Sbjct: 322 PALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGGHAFEEQSFQMSQ 381

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GAHIVV TPGRL D +  +   +S    VV+DEAD M+D+GF +D+   L S P      
Sbjct: 382 GAHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPSGHDD 441

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R+ +MFSAT+   +  LAK Y    + + I +  +    ++
Sbjct: 442 DEAMVAGEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRVE 501

Query: 221 YRAVLVA----LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            R  ++A       R   I+N  RY  A   +VF + + +     K L    ++VV L G
Sbjct: 502 QRVEMIADDAKRRKRLEEILNTNRY--APPIVVFVNLKRNCESLAKALYNMGWRVVTLHG 559

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             SQ++R  A++ +R+  A + +ATD+A RGID+P++ LV++  ++ + E+  HR GRTG
Sbjct: 560 SKSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRIGRTG 619

Query: 337 RAGRKGMSV-FVIPQN 351
           RAG+ G ++ F+ P++
Sbjct: 620 RAGKHGTAITFLGPED 635


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 179/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +    S   A
Sbjct: 16  LQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  I 
Sbjct: 135 LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATFTDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+A +  +  V ++++  N   S I    V V   ++ +  ++++  +   +A+VF  TR
Sbjct: 195 TMAASILRSPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMHLVAENNWDHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 NGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|119946798|ref|YP_944478.1| ATP-dependent RNA helicase RhlB [Psychromonas ingrahamii 37]
 gi|189040034|sp|A1SZG4|RHLB_PSYIN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119865402|gb|ABM04879.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 418

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 183/338 (54%), Gaps = 9/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDRF 69
            L+ +GY   T +Q   L   L  KD+   AQTG+GKT+AF  A+   LL     EN R 
Sbjct: 23  GLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPENRR- 81

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              + P A+ +APTRELA+Q+ ++   L + + + + +  GG  V  +R  L+ G  I++
Sbjct: 82  --KNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILI 139

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSA 187
           GT GR  D ++   +++  +++VVLDEAD M DLGF  DI ++    P  K R  ++FSA
Sbjct: 140 GTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEAKSRLNMLFSA 199

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LA  +  D   + I  E     +I       +  D+   +++++       A
Sbjct: 200 TLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQDKILLLLSLIEEDWPDKA 259

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+ +  +    LA    +   L+G++ Q +R   LQ   DG   + +ATDVAARG
Sbjct: 260 IVFANTKHTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDGEIDILVATDVAARG 319

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +P +  V + +L  + E+ +HR GRTGRAG KG+++
Sbjct: 320 LHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAI 357


>gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
          Length = 396

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 188/347 (54%), Gaps = 13/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AENDR 68
           A+S+ G+  LT +Q  IL   L  +D +  AQTG+GKT  F L +   LL     A+ +R
Sbjct: 31  AVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEALLKRPFAADEER 90

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
                 P A+ +APTRELA Q+  +   L   T +     +GG +   ++ +L+     I
Sbjct: 91  H--LGEPRAVVMAPTRELAQQIFDDCIALNKYTSLHSVCIMGGTNYETQQHELERQYVDI 148

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMF 185
           ++ TPGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ ++   P    R+ L+F
Sbjct: 149 LIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMPPNTDRQSLLF 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  +  LA  +  +   V I  E++    +D    L+    +  A+  I+     +
Sbjct: 209 SATFNQDVMGLAYRWLHEPAFVEIEPEHKTSELVDQHFYLLTEDQKLEAVERIITDTTVE 268

Query: 246 NAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             I+F + +  V R + K+   H  ++V LSG++ QQ+R   LQ  +DG A V +ATDVA
Sbjct: 269 KVIIFANRKDQVKRLYHKLRQGH--KIVMLSGDVIQQKREKYLQRFKDGHASVLVATDVA 326

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            RGI + D+  VI+  L   P++ +HR GRTGRAG+ G+S+  + ++
Sbjct: 327 GRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGKTGISISFVSED 373


>gi|306821005|ref|ZP_07454624.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550946|gb|EFM38918.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 387

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 191/342 (55%), Gaps = 6/342 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   L++++++  AQTG+GKT+AF L +  T+  EN R      P  + ++PT
Sbjct: 26  TQIQEEAIPIILKKRNLIAKAQTGTGKTLAFLLPIM-TMTDENLRL-----PQTVILSPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL+ Q  +  + L     +  A  +GG    ++     + + I+V TPGRL +HIR   
Sbjct: 80  RELSNQTKKVFDDLNVDKKLSCANIVGGHDFKKQENKFVSNSQIIVATPGRLLEHIRSGN 139

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +N+ H+   ++DEAD+ML+ GF +DI  + D  P K ++++ SAT+   I  LAK   K+
Sbjct: 140 INMKHISRFIIDEADQMLEYGFLEDIVLLKDKLPDKLQIVLLSATMPKPIIDLAKKLMKN 199

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V++++  E     +I+          +++ +  +L  +    +I+FC+++ +  +  + 
Sbjct: 200 PVKIDVTKEKTVTENIEQILFHTTEKFKNDTLKFVLEEYRPFMSIIFCNSKKNAEKLNEY 259

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           ++   +    + G+ SQ++R + L   R  + +  ++TD++ARG D+  +  VI+ E+ +
Sbjct: 260 MSISGYDCDIIHGDFSQKKREHILNEFRKMKFQYLVSTDLSARGFDIDGVTHVINYEVPT 319

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           +    +HR GRTGRA + G+++ +I +  +++ E++ +  N+
Sbjct: 320 DYNYYIHRIGRTGRAEKTGIAISLIDEKDEKKIEKISQRFNI 361


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 11/357 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GY   T VQ+  +      +D++  AQTGSGKTVAF L +   L+ +     +FS 
Sbjct: 241 VSKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTVAFLLPILQQLMVDGVAASKFSE 300

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  + +APTREL  Q+  E       T V   V  GG+S     R++  G +++ GT
Sbjct: 301 VQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTIREILKGCNVLCGT 360

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF   +  ++ S   P K  R+ LMFS
Sbjct: 361 PGRLMDIIGRGK-IGLSKLRYLVLDEADRMLDMGFEPAMRNVVGSPGMPAKEDRQTLMFS 419

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ +KD + + +       SD++   V V    + + ++ +L+  G++
Sbjct: 420 ATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSE 479

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 480 RTMVFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 539

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RG+D+ D++ +++ +L +N +  +HR GRTGR G  G +V F  P+     A  L +
Sbjct: 540 RGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPEADSNLARSLVK 596


>gi|289742393|gb|ADD19944.1| eukaryotic initiation factor 4a [Glossina morsitans morsitans]
          Length = 403

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 176/313 (56%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRDCQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R+L+ G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARNLEAGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L  S ++  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTSRIRLFVLDEADEMLSRGFKDQIQDVFKMLPNDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    + V   + +   + ++        +++FC+TR  V
Sbjct: 223 CFMRNPVSILVKKEELTLEGIKQFYINVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ +  H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 283 DQLTEEMTTHNFTVSAMHGDMEQRDRELIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 342

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 343 NYDLPSNRENYIH 355


>gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 424

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71
           L+E  Y+  T +Q   +   L  +D++  A TGSGKT AF L L   L  E   +D  S 
Sbjct: 23  LTEMEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTAAFALPLLQQLHTEKQLSDTSSK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA+QV   ++   A   G +  + + GGVS + +   L+ G  I+V
Sbjct: 83  GNYVTGLILVPTRELAIQVADSIKSYAAHLNGAIKTLAVFGGVSANTQMLALRGGTDILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK++++L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTEELSALLALTPKQKQILLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  L +    D V + + S +   S +  R   V   ++   + ++++ H  +  ++
Sbjct: 203 PEQVQALTQELLNDPVEIQLQSADA--STLVQRVFTVTKGEKTALLAHLIKRHEWRQVLI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +++ S +     LA+         G+  Q  R   L   + G+  V IATD+AARGID
Sbjct: 261 FVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFKAGQVHVLIATDIAARGID 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 359


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 184/346 (53%), Gaps = 10/346 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT +F L +   L+ +      FS 
Sbjct: 207 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPILQQLMVDGVAASCFSE 266

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ GT
Sbjct: 267 LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREILKGCNVLCGT 326

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    PK+  + LMFS
Sbjct: 327 PGRLLDMIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENHQTLMFS 385

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       +D++   V V    + + +V  L+  G +
Sbjct: 386 ATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQVTKFSKRDQLVEFLKTTGTE 445

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q ER  AL   R G+  V +AT VAA
Sbjct: 446 RTMVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCLVLVATSVAA 505

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     N
Sbjct: 506 RGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFDPN 551


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ +  S 
Sbjct: 16  LQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSI 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I 
Sbjct: 135 LLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D + + ++  N   + +    V V    + +   ++LR    K  +VF  TR
Sbjct: 195 MLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL 
Sbjct: 255 NGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 315 LVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 420

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 189/337 (56%), Gaps = 10/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           E L   G+   T +Q+  + P + EK D++  AQTG+GKT ++ L L   +   +DR S 
Sbjct: 14  EGLMSMGFKIPTPIQQQAI-PVIAEKHDLIACAQTGTGKTASYLLPLMDAICKNDDRPSI 72

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVHRERRDLQNGAHIV 128
           +    AL +APTRELA+Q+ ++++ L   TG+    V     GV   ++RR L+ G  IV
Sbjct: 73  S----ALILAPTRELALQIDQQIQGLAYFTGITSIAVYGGGDGVGYEQQRRSLKEGVDIV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  H+    + +  +  ++LDEAD MLD+GF+DDI  I+   P++R+ L+FSAT
Sbjct: 129 IATPGRLIAHMSSSTVRLEKIDFLILDEADRMLDMGFKDDILRIVRQLPEQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I   AK   K+  +VNIA  ++    I  +        +   + +IL      + I
Sbjct: 189 MPQKIRLFAKALLKNPQQVNIAI-SQPAEKIKQQYYRTFDEQKVTLLKHILSTDSFYSII 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FCST+ +V    K L ++  +V +   +L Q ER   L   ++ +  + + TDV +RGI
Sbjct: 248 IFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLNILVGTDVLSRGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  ++LV++ ++  +PE+ +HR GRT RA R G ++
Sbjct: 308 DIEGIDLVVNYDVPGDPEDYIHRIGRTARAERTGTAI 344


>gi|300113246|ref|YP_003759821.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539183|gb|ADJ27500.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 431

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 182/342 (53%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+V  T +Q   L   L  +DV   AQTG+GKT AF LA    LL E
Sbjct: 15  NLAEALIQGIQKAGFVICTPIQALALPLLLAGEDVAGQAQTGTGKTAAFLLATMQRLLRE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +  P  L + PTRELA+QV ++ + L   T +   V  GG +  ++R  L+ G 
Sbjct: 75  PS-VGVSQQPRGLIVVPTRELAIQVSKDAQLLGQHTDLRCVVVYGGTNYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GTPGRL D+ +   +    ++ VVLDEAD M DLGF  DI +IL     P KR  +
Sbjct: 134 DILIGTPGRLIDYYQQGIIGFKKIQTVVLDEADRMFDLGFIRDIRYILRRLPPPDKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  Y  +   + I  +      I  R    A  ++ + ++ +L+   
Sbjct: 194 LFSATLSLRVMELAYEYMNNPRLLRIEPQKVTVDKITERIYFPANEEKISLLLALLKRLA 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+    +    L  + F+   LS ++ Q +R   L   +DG   + +ATDV
Sbjct: 254 PRHAIVFANTKHGAEQVWGYLEGNGFKAALLSSDVPQGKRQRLLTAFQDGIYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +  +  V + +L  +PE+ +HR GRT RAG  G +V
Sbjct: 314 AARGLHVSTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAV 355


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 175/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ +  S 
Sbjct: 16  LQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSI 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I 
Sbjct: 135 LLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D + + ++  N   + +    V V    +++   ++LR       +VF  TR
Sbjct: 195 VLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKEDLFCHLLRKQRWTQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL 
Sbjct: 255 NGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 315 LVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|256420016|ref|YP_003120669.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034924|gb|ACU58468.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 182/326 (55%), Gaps = 11/326 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           L  +Q A ++ + +  +V++ + TGSGKT+ F + +   L    D+ +P +   AL IAP
Sbjct: 16  LNEMQIASIDANQKADNVILLSNTGSGKTLGFLIPILEQL----DKTTPGTQ--ALVIAP 69

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           +RELA+Q+  E  W    TG  V  C GG     E  +L     +++GTPGRL DHIR +
Sbjct: 70  SRELAMQI--EKVWKTMTTGFKVTCCYGGHLRETEENNLLEAPALIIGTPGRLGDHIRRE 127

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            +  + +K +VLDE D+ L+LGF+D+IEFI++S P  ++ ++ SAT +  I        +
Sbjct: 128 NIKPAGIKLLVLDEFDKSLELGFQDEIEFIIESLPGLKKRILTSATEAVDIPGFVG--IE 185

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + VR+N  +E +  + +  + V     D+ + +  ++ + G ++ I+FC+ R +V R   
Sbjct: 186 EPVRLNFLTEEKSEA-LAIKYVESEDKDKLDTLFRLVCFLGNRSTIIFCNHREAVERTNS 244

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L +     V   G + Q++R  AL   R+G + + + TD+AARG+D+P++  ++H  L 
Sbjct: 245 FLKDSGLTSVFYHGAMEQRDRDAALCKFRNGTSNILVTTDLAARGLDIPNIRYIVHYHLP 304

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
              +   HR+GRT R    G ++ +I
Sbjct: 305 HTADTYTHRNGRTARMDASGTAILII 330


>gi|261417664|ref|YP_003251346.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|319767530|ref|YP_004133031.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261374121|gb|ACX76864.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|317112396|gb|ADU94888.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 436

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+       LL   ++  
Sbjct: 15  IIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY-------LLPIMEKIK 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
           P  A + A+  APTRELA Q+  E   +     K  ++VA C IGG    +    L    
Sbjct: 68  PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    PK  +ML+F
Sbjct: 128 HIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SATI   +    K Y ++   V++  +   + +I++  VL+ L  R+    + ++L  + 
Sbjct: 188 SATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEH--VLIPLRGREKTKLLHDVLLSYN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   +  +ATD+
Sbjct: 246 PYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQYVVATDL 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    RL
Sbjct: 306 AARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIARL 361


>gi|327402381|ref|YP_004343219.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327317889|gb|AEA42381.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 410

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 131/388 (33%), Positives = 209/388 (53%), Gaps = 42/388 (10%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ EA+   G+ N T VQ+  +   L   D+L  AQTG+GKT AF L + + L  + D  
Sbjct: 11  LVLEAIHHMGFENATPVQQLSIPEILANNDLLACAQTGTGKTAAFILPILNKLTGKED-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH---------RERRD 120
              ++   L + PTRELAVQ+ +E++      G+   V +G ++V+          ++  
Sbjct: 69  ---TSINTLILVPTRELAVQIEQEIQ------GLSYFVSVGSMAVYGGGDGTRWEEQKSA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPG+L  HI    ++ S L+ +VLDEAD+MLD+GF DDIE I+   PKKR
Sbjct: 120 LVEGTDIIVATPGKLLSHIMQGYVDFSQLEHLVLDEADKMLDMGFSDDIERIISHLPKKR 179

Query: 181 RMLMFSATISPAITTLAK----NYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAI 235
           + L+FSAT+   I  LA     N ++ A+ ++  A+   QH       V++   D+ N  
Sbjct: 180 QTLLFSATMPSKIKNLASKILINPKEIALSISKPAAGVTQH-------VVLCFDDQKNKT 232

Query: 236 VN-ILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRD 292
           ++ IL+     ++ I+F S +  V      L    ++    +S  L Q+ER   L+  R 
Sbjct: 233 LDFILKGRPEYDSIIIFTSAKIKVHEIVYALKRAGYKNTQGVSSNLEQEEREEVLRGFRS 292

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
            R R+ +ATDV +RGID+ ++ LVI+ +   + E+ +HR GRT RA  KG +  +I P++
Sbjct: 293 KRTRILVATDVMSRGIDIKEINLVINYDAPRDAEDYVHRIGRTARANTKGEAYTLINPKD 352

Query: 352 MQR--RAERL----FREANVSVVWEPAP 373
           M +  R ERL     + A++   + P P
Sbjct: 353 MPKLARIERLIEMEIQRASIPEEFGPVP 380


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/344 (34%), Positives = 185/344 (53%), Gaps = 10/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF   LAST      
Sbjct: 18  PQVI-EALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF---LASTFHYLLT 73

Query: 68  RFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +PA    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++
Sbjct: 74  HPAPAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKVLED 133

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 134 GVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSANQRL 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++  
Sbjct: 194 NMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +AT
Sbjct: 254 EWPDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSI 357


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 189/368 (51%), Gaps = 19/368 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           GY   T VQ+  +   +  +D++  AQTGSGKT  F   + +          P  A    
Sbjct: 215 GYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPQQAQGGY 274

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  +
Sbjct: 275 GRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDL 334

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK-RRML 183
           +V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I  I+   D  P   R+ L
Sbjct: 335 LVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPTAGRQTL 394

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++ KD + +++        +I  +   V   D+ + +++IL  H 
Sbjct: 395 MFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYVEDVDKRSVLLDILHTHD 454

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             N  +VF  T+      +  L    F   ++ G+ +Q+ER  AL+M R+GR  + +AT 
Sbjct: 455 PTNLTLVFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKALEMFRNGRCPILVATA 514

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERL 359
           VAARG+D+P ++ V++ +L ++ ++ +HR GRTGRAG  G++     +  +   R    L
Sbjct: 515 VAARGLDIPHVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLLEL 574

Query: 360 FREANVSV 367
            +EAN  V
Sbjct: 575 LKEANQEV 582


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 188/358 (52%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 136 FPQYVMTEVKAQGFARPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 195 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 253

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 254 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 313

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA+++  D ++VNI S +    H       ++     R+    ++ R   
Sbjct: 314 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHLERIMD 373

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            KNA  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 374 DKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 433

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 434 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 491


>gi|25027342|ref|NP_737396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492623|dbj|BAC17596.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 369

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 2/302 (0%)

Query: 49  GKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           GKT  FG+ L   +    D       P AL I PTRELAVQVG +LE       + V   
Sbjct: 2   GKTYGFGVPLLDRVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTF 61

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG     +   L+ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  D
Sbjct: 62  YGGTPYEEQIDALETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPD 121

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ +   K + ++FSAT+   I TLA+++    V +   S +   +    R ++   
Sbjct: 122 IEKIMRALTHKHQTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQA 181

Query: 229 S--DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D++     IL+  G    I+F  T+ + ++  + LA   F V ++ G++ Q  R  +
Sbjct: 182 HRMDKEAVTARILQARGRGKTIIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERS 241

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R G+  + +ATDVAARGID+ D+  VI+ +   +P   +HR GRTGRAG  G +V 
Sbjct: 242 LNAFRSGKIDILVATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVT 301

Query: 347 VI 348
           ++
Sbjct: 302 LV 303


>gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 425

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A    LL
Sbjct: 14  FAIAPEVVA-GLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTATCHRLL 72

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R  L+ 
Sbjct: 73  QSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 130

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++ D  P   KR 
Sbjct: 131 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPDTSKRL 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++ ++  
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLLTLIEE 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF +T+ S       L     +V  L+G+++Q++R + L     G     +AT
Sbjct: 251 EWPDKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++
Sbjct: 311 DVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAI 354


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 185/351 (52%), Gaps = 8/351 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 128 FPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 186

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 187 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 245

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 246 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 305

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++  +  
Sbjct: 306 SATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           + +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +AT
Sbjct: 366 NRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVAT 425

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ F   +N
Sbjct: 426 DVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 476


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 221 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 279

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 280 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 338

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 339 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 398

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 399 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 458

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 459 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 518

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 519 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 578

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 579 KVLEEANQAI 588


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ +  S 
Sbjct: 16  LQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSI 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I 
Sbjct: 135 LLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D + + ++  N   + +    V V    + +   ++LR    K  +VF  TR
Sbjct: 195 MLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL 
Sbjct: 255 NGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 315 LVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 197/354 (55%), Gaps = 12/354 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + L   +  + +   
Sbjct: 14  ILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V  +   G  S+  +  +L+   HIVV 
Sbjct: 74  ------ALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVHIVVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + PK++ + +FSATI 
Sbjct: 128 TPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATID 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAK 245
             I  + + Y  D   +NI  EN   ++   R +   ++  + R+  I+   ++     K
Sbjct: 188 EEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ +  + +++DVA+
Sbjct: 247 SVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  ++  E +
Sbjct: 307 RGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 188/358 (52%), Gaps = 26/358 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA   
Sbjct: 129 PAVM-ENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGP 187

Query: 67  DRFSPAS--------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           D   P +         P AL ++PTRELA+Q+ +E      K+ +  A+  GG   +R++
Sbjct: 188 DMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQ 247

Query: 119 RD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
            + L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I  I+    
Sbjct: 248 VNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGM 307

Query: 177 -PKK-RRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLV-A 227
            PK  R   MFSAT    I  LAK++ KD        RV   SEN     I+ R + V  
Sbjct: 308 PPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN-----IEQRLLWVNE 362

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +  R N +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L
Sbjct: 363 MEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 422

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ R G+  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++ 
Sbjct: 423 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 480


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 186/342 (54%), Gaps = 18/342 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76
           GY   T++Q+  + P L+ +D++  A +GSGKT AF + L             AS P   
Sbjct: 48  GYKKPTAIQKRFVAPFLQSRDLVAQASSGSGKTSAFCICLLQ-----------ASEPTLR 96

Query: 77  ---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q       +    G+     IGG S+  + R L++G  IV GTPG
Sbjct: 97  ETQGLVLSPTRELALQTQDLCNNIGHYMGISAYAAIGGKSIEDDLRRLESGVQIVSGTPG 156

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L ++HLK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +
Sbjct: 157 RVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPP-LQVVLVSATLPVDV 215

Query: 194 TTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
             + + +  + VR+ +   E    S + Y   +    ++ + + ++       +A++FC+
Sbjct: 216 LDMTEKFMTEPVRILVKRDEITVDSIMQYFVSVDEEKNKFDTLCDLYDTLTIAHAVIFCN 275

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+TD+ +RGID+  
Sbjct: 276 TRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFREGKSRVLISTDLWSRGIDVEQ 335

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R
Sbjct: 336 ISLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELR 377


>gi|295674415|ref|XP_002797753.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
 gi|226280403|gb|EEH35969.1| ATP-dependent RNA helicase DBP3 [Paracoccidioides brasiliensis
           Pb01]
          Length = 486

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 186/324 (57%), Gaps = 13/324 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S +S   A+ I PTRELA Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINGPRS-SSRISAVIITPTRELATQIYDQL-MK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +    V +A   GG S   +RR L+  A +VV T GRL D    + L +  +K +VLDEA
Sbjct: 166 FTPNNVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI---ASE 212
           D MLD GF  DI+ I+ + P  KKR+ +MF+AT   ++  LA  + KD V + I   +S+
Sbjct: 225 DRMLDKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLADTFMKDQVMITIGDLSSD 284

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAEH 267
            R ++ I     ++   D++  ++++L +Y   KNA    +VFC  +   +R  +++   
Sbjct: 285 IRANTRIKQIVEVLKPEDKEYRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERLIRSK 344

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F+V  + G+++Q ER  +L   + G   + +ATDVAARG+D+P + LV++       E+
Sbjct: 345 GFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNVTFPLTVED 404

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQN 351
            +HR GRTGRAG  G+++ +  +N
Sbjct: 405 YVHRIGRTGRAGADGLAITMFTEN 428


>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 426

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 11/347 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE------- 65
           +AL E GY + T VQ+  +   L+ +DV+  AQTG+GKT AF L L   LL         
Sbjct: 14  KALVELGYSSPTDVQKQAIPLALKGEDVMAGAQTGTGKTAAFSLPLLQRLLTLPSQSEQS 73

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D  +      AL + PTRELA QV   +      T + VAV  GG S++ + + +
Sbjct: 74  AESSTDSKASGHPIRALILTPTRELAQQVFDSMSAYAKYTDLKVAVAYGGTSMNVQVKAI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA I+V TPGRL DH+  + ++++ ++  VLDEAD MLD+GF  DI+ I+   P +R+
Sbjct: 134 NAGADILVATPGRLLDHVFNRSVSLTEIETFVLDEADRMLDMGFIVDIQRIMKRMPDERQ 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT S  +  LA +   +   V +   N     ++     V    +   +  ++  
Sbjct: 194 TLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPVDKHRKAELLAYLIGS 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+    +  K L     + V+++G+ SQ  R  AL   + G+ RV +AT
Sbjct: 254 RNWQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQRALDEFKSGKVRVLVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARG+D+  L  V++ ++    E+ +HR GRTGRAG  G ++ ++
Sbjct: 314 DVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGHAITLM 360


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q   + P  +  DV+  AQ+G+GKT  F   + + L   
Sbjct: 47  NLHENLLRGIYAYGFEKPSAIQAKGIVPFTKGLDVIQQAQSGTGKTATFCAGILNNLDYN 106

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL +APTRELA Q+ + +  L     V    C+GG SV  + R L  G 
Sbjct: 107 LNECQ------ALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGAGV 160

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 161 QVVVGTPGRVFDMLRRRYLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKLQVGVF 220

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   + + + + ++      
Sbjct: 221 SATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVDVDKEEWKLDTLCDLYETLAI 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T+ + E    V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 281 TQSVIFANTRRKVDWLTEKMRERDHTVSATHGDMEQNARDVIMREFRSGSSRVLITTDLL 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  I +  +R  + + R  N
Sbjct: 341 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFIVKEDERMLQDIQRFYN 400

Query: 365 VSVVWEPAPS 374
             V  E  PS
Sbjct: 401 TVV--EELPS 408


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 179/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q   +    + +DV+  AQ+G+GKT  F + +  ++              AL
Sbjct: 40  GYETPSAIQSRAITQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS------VRETQAL 93

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+   +  L     V    CIGG SV  + + L  G H+V GTPGR+ D 
Sbjct: 94  ILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDM 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L + ++K +VLDEADE+L+ GF+D I  I    P   ++++ SAT+   +  L  
Sbjct: 154 IRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLPPGTQVVVVSATLPQDVLELTN 213

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC++R  V
Sbjct: 214 KFTTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKV 273

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + + E  F V ++ GE+ Q+ER   +Q  R G +RV + TD+ ARGID+  + LVI
Sbjct: 274 DWLAEKMREANFTVTSMHGEMPQKERDAIMQEFRQGHSRVLLCTDIWARGIDVQQVSLVI 333

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L SN EN +HR GR+GR GRKG+++
Sbjct: 334 NYDLPSNRENYIHRIGRSGRFGRKGVAI 361


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 183/347 (52%), Gaps = 21/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--------------- 64
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +                 
Sbjct: 147 YTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQAIKSSGQ 206

Query: 65  ENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN R+      P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 207 ENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLER 266

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + + +   +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 267 GCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGI 326

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ +D + + +        +I  + V V   D+ + ++++L
Sbjct: 327 RQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLL 386

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR  + 
Sbjct: 387 NATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIL 446

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 447 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 493


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 247 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 305

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 306 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 364

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 365 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 424

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 425 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 484

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 485 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 544

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 545 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 604

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 605 KVLEEANQAI 614


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 235

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 236 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 294

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 295 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 354

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 355 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 414

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 475 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 535 KVLEEANQAI 544


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 235

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 236 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 294

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 295 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 354

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 355 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 414

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 415 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 474

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 475 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 534

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 535 KVLEEANQAI 544


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 188/358 (52%), Gaps = 26/358 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA   
Sbjct: 132 PAVM-ENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGP 190

Query: 67  DRFSPAS--------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           D   P +         P AL ++PTRELA+Q+ +E      K+ +  A+  GG   +R++
Sbjct: 191 DMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQ 250

Query: 119 RD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
            + L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I  I+    
Sbjct: 251 VNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGM 310

Query: 177 -PKK-RRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLV-A 227
            PK  R   MFSAT    I  LAK++ KD        RV   SEN     I+ R + V  
Sbjct: 311 PPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSEN-----IEQRLLWVNE 365

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +  R N +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L
Sbjct: 366 MEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNL 425

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ R G+  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++ 
Sbjct: 426 ELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 483


>gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis]
 gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis]
          Length = 837

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 191/372 (51%), Gaps = 29/372 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 418 PEII-EIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 476

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 477 IERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLG 536

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 537 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 596

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  +     
Sbjct: 597 TEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERT 656

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 657 NQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 716

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTGRAG
Sbjct: 717 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTGRAG 776

Query: 340 RKGMSVFVIPQN 351
           + G+++  + ++
Sbjct: 777 KTGVAISFVTKD 788


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 181/332 (54%), Gaps = 11/332 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           + G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +   +       + +S   
Sbjct: 35  QYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIV------DTKSSEVQ 88

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q  + +  +     V    CIGG SV  + R L++G  +V GTPGR+C
Sbjct: 89  ALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVC 148

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML  GF+D I  +    P + ++++ SAT+   I  +
Sbjct: 149 DMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEI 208

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCST 253
              +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T
Sbjct: 209 TSKFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 266

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T  + E+ F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+  +
Sbjct: 267 KRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQV 326

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 327 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 358


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 183/343 (53%), Gaps = 19/343 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +    S   A
Sbjct: 50  LQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGPAVSSNRA 109

Query: 75  PLALAIAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + L + PTRELA QV         G +L +L A          GGVS++ +   L+ G 
Sbjct: 110 RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAA---------YGGVSINPQMMKLRKGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+F
Sbjct: 160 DVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  I T+A +  +  V ++++  N   S I    V V   ++ +  ++++  +   
Sbjct: 220 SATFTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLVAENNWD 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAA
Sbjct: 280 HALVFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 340 RGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 382


>gi|227549310|ref|ZP_03979359.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078629|gb|EEI16592.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 430

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 190/363 (52%), Gaps = 8/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L+++G      +QE  +   L  +DVL    TGSGKT  FGL + + L   
Sbjct: 8   GLPRPIVNVLAKQGITQPFPIQEEAIPDALAGRDVLGRGPTGSGKTFTFGLPMLARLAGA 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P  L +APTRELA Q+   L+ L A  G+ +   +GGV+++   R L    
Sbjct: 68  P---SKPGHPRGLILAPTRELATQIRERLDDLAAALGLRLLDVVGGVNINNHLRSLAAPV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D I  + L   H++   LDEAD+M D+GF   +  +LD +PK  + L+F
Sbjct: 125 DVLVATPGRAEDLISQRKLFFDHVEITALDEADQMADMGFLPQVRKLLDRTPKGGQRLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y  D V  + A      + +++  +LV   DRD A  +++ + GA+
Sbjct: 185 SATLDGDVEKLIARYMSDPVTHSTAPVQASVNTMEHYRLLVG--DRD-ARSDVVLHIGAR 241

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+  V R  K L         L G+  Q  R+ AL+   DG A V +ATD+
Sbjct: 242 EGKTIMFMRTKHGVDRQVKKLRRAGINAQGLHGDKGQGARTRALEGFGDGTAPVLVATDI 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++    ++  ++L  +A
Sbjct: 302 AARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVLDEQEKEVQQLMNKA 361

Query: 364 NVS 366
            VS
Sbjct: 362 GVS 364


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 132 FPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 191 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 249

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 250 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 309

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++  +  
Sbjct: 310 SATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 369

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +AT
Sbjct: 370 DRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGKSPIMVAT 429

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 430 DVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDL 487


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 188/366 (51%), Gaps = 25/366 (6%)

Query: 5   ENIPQVIGEALSE------------RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P+ + E  S               +V  T VQ+  +     ++D++  AQTGSGKT 
Sbjct: 126 ENVPEPVTEFTSPPLDELLLENIKFAHFVKPTPVQKYSIPIVANKRDLMACAQTGSGKTG 185

Query: 53  AFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
            F   + S          P +A         P A+ +APTRELA Q+  E +    ++ V
Sbjct: 186 GFLFPVLSESFFTGPSEIPEAARSSYMRKAFPTAVVLAPTRELATQIFDEAKKFTYRSWV 245

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              V  GG  V  + RDL  G  ++V TPGRL D +    ++++ +K +VLDEAD MLD+
Sbjct: 246 RPTVVYGGSDVGSQMRDLDRGCDLLVATPGRLNDLLERGKISLAKVKYLVLDEADRMLDM 305

Query: 164 GFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           GF   I  I++        +R+ LMFSAT    I  LA+++  D + +++        +I
Sbjct: 306 GFEPQIRNIVEGCDMPGVDQRQTLMFSATFPVDIQHLARDFLSDYIFLSVGRVGSTSENI 365

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
             R + V   D+ +A++++L        ++F  T+    + T  L    F+  A+ G+ +
Sbjct: 366 TQRVLYVEDEDKKSALLDLLSASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRT 425

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q ER  AL   + G+A + +AT VAARG+D+P++  VI+ +L  + ++ +HR GRTGRAG
Sbjct: 426 QSERERALGSFKTGKADLLVATAVAARGLDIPNVTHVINYDLPGDVDDYVHRIGRTGRAG 485

Query: 340 RKGMSV 345
             G++ 
Sbjct: 486 NTGLAT 491


>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 183/349 (52%), Gaps = 4/349 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+       T +Q   +   ++ +DVL  AQTG+GKT AF L +   L+A+  R +P +
Sbjct: 18  ALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSLPVIDALIAKGGRPAPKT 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA Q+   ++   A T +   V  GGVS+  +   ++ G  IV+ TPG
Sbjct: 78  -PKVLVLTPTRELASQIAGNVKSYTAGTKLTHHVIFGGVSIRPQIEAMRRGVDIVIATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + L +S +  VVLDEAD MLD+GF  D+  I+   P  R+ L+FSAT+  A+
Sbjct: 137 RLLDLLNQRALTLSEVHHVVLDEADRMLDMGFVKDVMRIVSQLPADRQSLLFSATMPRAM 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     + VRV +  E      I+    LV    +   ++  L     +  ++F  T
Sbjct: 197 EELAAKILTNPVRVEVTPEVVTVEKINQSVFLVPQKAKKLWLIEHLAKPDFEKTVIFTRT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   ++    L +      A+ G  SQ  R  AL   + G   V +ATD+ ARGI + D+
Sbjct: 257 KHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVLVATDIVARGIHVDDI 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERL 359
             V++ +L   PE+ +HR GRT RAG+ G++V ++  + +   R+ ERL
Sbjct: 317 SHVVNFDLPEEPESYVHRIGRTARAGKSGIAVALVDPSERSKLRQIERL 365


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 187/365 (51%), Gaps = 20/365 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M IF+  P   V+   +   GY   T +Q   +   L   D+L  AQTGSGKT AF + +
Sbjct: 144 MSIFDEAPLHPVMKGNIKLAGYEIPTPIQRYCIPAILEGHDLLSCAQTGSGKTAAFLIPI 203

Query: 59  ASTLLAENDRFS-----PASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            S L+ +    +     P S       PL L +APTRELA Q+  E      ++ +   V
Sbjct: 204 LSKLMGKASSLAAPRPVPGSTEPYIAQPLVLVVAPTRELATQIFDESRRFCYRSKLRPCV 263

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFR 166
             GG     +R +L+ G  I+VGTPGRL D I RG+ L++  LK VV+DEADEMLD+GF 
Sbjct: 264 VYGGADSATQRMELKKGCDILVGTPGRLADFIERGRILSLRRLKFVVIDEADEMLDMGFE 323

Query: 167 DDIEFILDSSPK-----KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDID 220
             I  +L SS        +++LMFSAT   AI  LA+++   D V + +      H +I 
Sbjct: 324 PQIRKLLQSSGNANEDDDQQVLMFSATFQKAIRKLARDFLSDDFVHIKVGRIGSTHENIT 383

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R + V    +  AI ++L        ++F + +         L        ++ G+ +Q
Sbjct: 384 QRVLWVDELRKKEAIYDLLCTAPPARTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQ 443

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER +A+   R G+  + IAT VAARG+D+ ++  VI+ ++  N +  +HR GRT R G 
Sbjct: 444 REREDAILAFRSGKCPIMIATAVAARGLDIKNVMHVINYDMVQNIDEYIHRIGRTARIGN 503

Query: 341 KGMSV 345
           +G++ 
Sbjct: 504 RGLAT 508


>gi|224130528|ref|XP_002320859.1| predicted protein [Populus trichocarpa]
 gi|222861632|gb|EEE99174.1| predicted protein [Populus trichocarpa]
          Length = 446

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 193/381 (50%), Gaps = 21/381 (5%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFSPASAPLALAI 80
           +T VQ A L   ++ KDVL  A+TG+GKTVAF L     ++     DR       + L I
Sbjct: 1   MTVVQAATLPVIVKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPLDRDQKRPPIIVLVI 60

Query: 81  APTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDH 138
            PTRELA Q   E   L      + V V IGGV +  E+R+LQ N   I+V TPGRL DH
Sbjct: 61  CPTRELATQAATEANTLLKYHPSIGVQVVIGGVRIASEQRNLQANPCQILVATPGRLKDH 120

Query: 139 IR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           I    G    +  +K +VLDEAD +LD+GFR DIE I+ + P++R+ LMFSAT+   +  
Sbjct: 121 IENTAGFATRLMGVKVLVLDEADRLLDMGFRKDIEKIIAAIPEQRQTLMFSATVPEEVRQ 180

Query: 196 LAKN-YQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AI 248
           +     ++D   +N   E  +  HS +    V+  L  +   +  IL+ H A +     I
Sbjct: 181 ICHAALKRDHEFINTVEEGTEDTHSKVRQMHVIAPLDKQFPLLYVILKDHIADDPDYKVI 240

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T         +L E    +  +    +Q  R+      R  R  + + +DV+ARG+
Sbjct: 241 VFCTTARVTGLVAGLLGELNLNIREIHSRKAQTYRTRVSNEFRKSRGLILVTSDVSARGV 300

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA--NVS 366
           D PD+ LV+   L ++ E  +HR GRTGR G++G  + ++        E  F     ++ 
Sbjct: 301 DYPDVTLVLQVGLPASREQYIHRLGRTGRKGKEGEGILLLAP-----WEEFFLSTVKDLP 355

Query: 367 VVWEPAPSVEAIRERDAQRIL 387
           +   P PS++   ++  +R L
Sbjct: 356 LTKAPMPSIDPDTKKKVERAL 376


>gi|52425891|ref|YP_089028.1| ATP-dependent RNA helicase RhlB [Mannheimia succiniciproducens
           MBEL55E]
 gi|61214859|sp|Q65RG7|RHLB_MANSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|52307943|gb|AAU38443.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 417

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/335 (35%), Positives = 186/335 (55%), Gaps = 5/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL   G+   T +Q   L   L  KDV   AQTG+GKT+AF  A    LL    +    
Sbjct: 22  EALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHHLLEHPVK---T 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + P AL +APTRELAVQ+  + E +   TG+  A+  GG    ++ + ++ GA I++GT 
Sbjct: 79  NHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAIEAGADIIIGTT 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSATIS 190
           GR+ D+++   + +SH++ VVLDEAD M DLGF  DI +++    SPK+R  L+FSAT+S
Sbjct: 139 GRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQRLTLLFSATLS 198

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA     D   V +    +    I       +  D+   ++ +L     +  I+F
Sbjct: 199 YKVRELAFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLLEEEWPERCIIF 258

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+    +    LA    +V  L+G+++Q++R + L+   DG   + +ATDVAARG+ +
Sbjct: 259 ANTKHQCEKIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGALDILVATDVAARGLHI 318

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           PD+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 319 PDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 353


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L+  D+   AQTG+GKT+AF +A    LL  N+  S  +
Sbjct: 22  ALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHHLLT-NECQSNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+  + E L   + + +A+  GG    ++   ++ G  I+VGT G
Sbjct: 81  QPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIEKGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++   PK  +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGIINLDCIQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  V I    R    I       +  D+   ++ +L     +  ++F 
Sbjct: 201 RVRELAYEDMNNASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L     +V  L+G+++Q++R   L     G   + +ATDVAARG+ +P
Sbjct: 261 NTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 321 EVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSI 354


>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
 gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
          Length = 418

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 170/322 (52%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +QE  +   +  +D+   A+TG+GKT AF L +   L   ++         AL +APT
Sbjct: 7   SPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKALILAPT 66

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+    E +  +  +  AV  GGV    +   +  G  +++ TPGRL D      
Sbjct: 67  RELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLIDLYNQGL 126

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++ H++ +VLDEAD MLD+GF  DI  IL   P++ + ++FSAT+   I  L  +   D
Sbjct: 127 VDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLVSDLLND 186

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            +++ I+S N     I+     V   ++   ++ +L      NAIVF  T+ +V    K 
Sbjct: 187 PLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRNVDTLCKK 246

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +       + G+ SQ  R  AL   ++ + RV +A+D+AARGID+ +L  VI+ +L  
Sbjct: 247 LIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHVINFDLPD 306

Query: 324 NPENLLHRSGRTGRAGRKGMSV 345
             EN +HR GRT RAG  G ++
Sbjct: 307 QAENYVHRIGRTARAGASGEAI 328


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 181/343 (52%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+ +G+ + T+VQ       LR +D++  A+TGSGKT+AF +  A   +A  
Sbjct: 119 VPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAF-MVPALAHIAMQ 177

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ + +APTRELA Q+ +E + +     +      GG     +   L+NG H
Sbjct: 178 EPLRTGDGPMVVVLAPTRELAQQIEQETKKVLPHD-LRCGCVYGGAPKGPQLGILRNGVH 236

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +N   +  +VLDEAD MLD+GF   +  I       R+ LMFS
Sbjct: 237 ILVATPGRLIDFLEIKRINFFRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFS 296

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA  +QKD +R+N+ S E   + D+    +L     + + +  +L     +
Sbjct: 297 ATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMDELKKLLANRLNQ 356

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+ +       L    +  +A+ G+  Q++R   L+  R       +ATDVAA
Sbjct: 357 RVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPRLCLVATDVAA 416

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ +LE VI+ +     ++ +HR GRTGRAG KG +  +I
Sbjct: 417 RGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLI 459


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 185/352 (52%), Gaps = 30/352 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S + +E     P  A     
Sbjct: 243 YTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSE----GPGEALQATK 298

Query: 75  ----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                           P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ 
Sbjct: 299 ASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQI 358

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSS 176
           RDL+ G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+  D+ 
Sbjct: 359 RDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTM 418

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P K  R+ +MFSAT    I  LA+++ ++ + + +        +I  + V V  +D+ + 
Sbjct: 419 PPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSF 478

Query: 235 IVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G
Sbjct: 479 LLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSG 538

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 539 RCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 590


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 12/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 266 VTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMADGVAASKFSE 325

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +I+ GT
Sbjct: 326 VQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGYTIREVLKGCNILCGT 385

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 386 PGRLLDIIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSPGMPSKEDRQTLMFS 444

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    + + ++++LR  G +
Sbjct: 445 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTE 504

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 505 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 564

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG--RKGMSVF 346
           RG+D+  ++ V++ +L S+ +  +HR GRTGR G  R+ +S F
Sbjct: 565 RGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFF 607


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/392 (31%), Positives = 194/392 (49%), Gaps = 28/392 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P   V+ E ++   Y   T VQ+  +      +D++  AQTGSGKT  F   + S 
Sbjct: 165 FTNPPLDPVLLENIAMAHYTTPTPVQKYSIPIVANNRDLMACAQTGSGKTGGFLFPILSA 224

Query: 62  LLAENDRFSP----------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
             A     +P           + P AL +APTREL  Q+  E      ++ V   V  GG
Sbjct: 225 SFAAGPAPTPDQGASYGRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVYGG 284

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             + ++ R L+ G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  
Sbjct: 285 ADIGQQLRTLERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRR 344

Query: 172 ILDSSP----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I+         +R+ LMFSAT    I  LAK++ KD + +++        +I  +   V 
Sbjct: 345 IVQGEDMPGVHERQTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQKIEFVE 404

Query: 228 LSDRDNAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             D+ + +++IL  + A  A         +VF  T+         L  H     ++ G+ 
Sbjct: 405 DPDKRSVLLDILSANQAPAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDR 464

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL   R GR  + +AT VAARG+D+P++  V++ +L  + ++ +HR GRTGRA
Sbjct: 465 TQREREMALNTFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRIGRTGRA 524

Query: 339 GRKGMSVFVI---PQNMQRRAERLFREANVSV 367
           G  G+S        +N+ R    L REAN  V
Sbjct: 525 GNTGVSTAFFNRSNRNIVRELVELLREANQEV 556


>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
 gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
          Length = 512

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/352 (34%), Positives = 194/352 (55%), Gaps = 23/352 (6%)

Query: 38  KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +D +  A TGSGKT+AFG+ AL         +    + P  L ++PTRELA Q+   L  
Sbjct: 130 RDFIGIAATGSGKTIAFGVPALMHIRKKVGGKAVKKAVPRCLVLSPTRELAQQIADVLSE 189

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             A  G+      GG     +   L++G  IV+GTPGR+ D I      ++ +  VVLDE
Sbjct: 190 AGAPCGIKSVCLYGGTKKEPQISALKSGVDIVIGTPGRMKDLIEMGVCRLNEVSFVVLDE 249

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQ 215
           AD MLD+GF  ++  IL  +   R+M+MFSAT   A+  LA+ +   + ++V I SE+  
Sbjct: 250 ADRMLDMGFEPEVRAILSQTSSVRQMVMFSATWPLAVHKLAQEFMDPNPIKVVIGSEDLA 309

Query: 216 HSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQ 270
            ++ D   ++  L D  RD+ ++ +L +YH A++   +VF   +   +R   +L    ++
Sbjct: 310 -ANHDVMQIVEVLDDRTRDSRLLALLDKYHQAQSNRVLVFVLYKKEAARVETMLQRRGWK 368

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            V++ G+ +Q +R+ AL + ++G+  + IATDVA+RG+D+PD+E+VI+       E+ +H
Sbjct: 369 AVSVHGDKAQHDRTKALSLFKEGKCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVH 428

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           R GRTGRAG+KG+            A   F +AN ++  E    V  +RE D
Sbjct: 429 RIGRTGRAGKKGV------------AHTFFTQANKALAGE---LVNVLREAD 465


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 237

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 238 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 296

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 297 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 356

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 357 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 416

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 417 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 476

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 477 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 536

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 537 KVLEEANQAI 546


>gi|262166586|ref|ZP_06034323.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
 gi|262026302|gb|EEY44970.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus VM223]
          Length = 388

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 179/298 (60%), Gaps = 5/298 (1%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           AL + PTRELA QV  ++  L  +T   + V    GG+ +  +   L++GAHI+VGTPGR
Sbjct: 3   ALVLCPTRELADQVATDIRTL-GRTIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGR 61

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT   +I 
Sbjct: 62  ILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLLFSATYPASIE 121

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H   +++VFC+T+
Sbjct: 122 QIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSTARDEALETLLLHHQPTSSVVFCNTK 181

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+
Sbjct: 182 REVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLD 241

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
            V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++  EP+
Sbjct: 242 AVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAI--EPS 297


>gi|227833123|ref|YP_002834830.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 430

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 184/368 (50%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ +   L ++G      +QEA +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MSTFADLGLPRDVVRVLDKQGITTPFPIQEAAIPDALSGKDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L A     S  + P  L +APTRELA Q+ + LE   A  G+ V   +GGV+++   
Sbjct: 61  LSRLAASG--VSRPAHPRGLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L   H+    LDEAD+M D+GF   +  +L  +P+
Sbjct: 119 RSLARPVDLLVATPGRAQDLIDQGKLFFDHVAIAALDEADQMADMGFLPQVRKLLKLTPE 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   +  L + +  + V  + A        +++  + +   +  N +V  
Sbjct: 179 EGQRLLFSATLDGEVNKLVEQFMHEPVTHSTAPVEAAVDTMEHHLIFIGTREARNDVV-- 236

Query: 239 LRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           LR    K   I+F  T+  V R  K L       + L G+  Q  R+ A++   DG   V
Sbjct: 237 LRLGARKGKTIMFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGSRTKAIEGFADGSVPV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+ LV+H +  +  +  LHRSGRT R G  G  V ++    +    
Sbjct: 297 LVATDIAARGIDIADVSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDEQRDEVA 356

Query: 358 RLFREANV 365
           +L  +A V
Sbjct: 357 KLIAKAGV 364


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 178/351 (50%), Gaps = 19/351 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L        D   
Sbjct: 39  IAQSLAGAGITTPFPIQSMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLQRTAVPGDPAY 98

Query: 71  PA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            A      P AL I PTRELA QV  +L          +    GG +   +   L  G  
Sbjct: 99  DALPNPGKPQALVIVPTRELATQVAGDLTTASRNYPARILTVYGGRAYEPQIDALTKGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + + L++S++K VVLDEADEMLDLGF  D+E ++  +   R+ ++FS
Sbjct: 159 VVVGTPGRLLDLAQQRHLDLSNVKCVVLDEADEMLDLGFLPDVERLIAQTDPARQTMLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---------DRDNAIVN 237
           AT+   +  +A++Y      +      R     D  A + A++         D+   +  
Sbjct: 219 ATMPGPVVAMARSYMSRPTHI------RAVDPTDDGATVAAITQFAYRTHALDKVEVLAR 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+  G    IVF  T+ + +   + L E  F   ++ G+L Q  R  AL+  R G+  V
Sbjct: 273 MLQATGRGLTIVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHGKVDV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG  G++V  +
Sbjct: 333 LVATDVAARGIDVEDVTHVINYQCPEDEKTYLHRIGRTGRAGNTGVAVTFV 383


>gi|77166040|ref|YP_344565.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254436366|ref|ZP_05049872.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76884354|gb|ABA59035.1| DEAD/DEAH box helicase-like protein [Nitrosococcus oceani ATCC
           19707]
 gi|207088056|gb|EDZ65329.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 181/342 (52%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+   T +Q   L   L  +DV   AQTG+GKT +F LA    LL E
Sbjct: 15  NLAEALIQGIQKAGFAICTPIQALALPLLLAGEDVAGQAQTGTGKTASFLLATMQCLLRE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTRELA+QV ++ ++L   T +      GG +  ++R  L+ G 
Sbjct: 75  PSA-GAGQQPRGLIVAPTRELALQVSKDAQFLGQYTNLKCVAVHGGANYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GTPGRL D+ + + +    ++ VVLDEAD M DLGF  DI +IL     P KR  +
Sbjct: 134 DILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYILRRLPPPDKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  Y  +   + I  +      I  R    A  ++ + ++ + +   
Sbjct: 194 LFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEEKISLLLALFKRLV 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+    +    L  + F+   LS ++ Q +R   L   +D    + +ATDV
Sbjct: 254 PRHAIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDRIYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +  +  V + +L  +PE+ +HR GRT RAG  G++V
Sbjct: 314 AARGLHISTVTHVFNYDLPQDPEDYVHRIGRTARAGASGLAV 355


>gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis]
 gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis]
          Length = 835

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 191/372 (51%), Gaps = 29/372 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 416 PEII-EIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 474

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 475 IERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLG 534

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 535 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 594

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  +     
Sbjct: 595 SEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERT 654

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 655 NQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 714

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTGRAG
Sbjct: 715 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTGRAG 774

Query: 340 RKGMSVFVIPQN 351
           + G+++  + ++
Sbjct: 775 KTGVAISFVTKD 786


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 191/365 (52%), Gaps = 9/365 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   PA
Sbjct: 14  EALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKL---SEGGHPA 70

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A   + +APTRELA Q+ +++E   +    + V V     GV   +++R L  GA +V+
Sbjct: 71  DAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA N   +   V +A        +  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLAGNILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIRSLFAEETPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   + + +  +  + 
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDIY 368

Query: 369 WEPAP 373
             P P
Sbjct: 369 KIPVP 373


>gi|91792251|ref|YP_561902.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714253|gb|ABE54179.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 473

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 180/344 (52%), Gaps = 6/344 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA----STLLA 64
           Q I  AL E GY   T +QE  +   L   +++ +AQTG+GKT +F L L     +T L 
Sbjct: 10  QPILLALEELGYQTPTPIQEKAIPVILEGHNLIAAAQTGTGKTASFVLPLLELINNTSLD 69

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  P     AL + PTRELAVQV   +E       +      GGV     ++ L  G
Sbjct: 70  NTVKVRPKRI-RALILTPTRELAVQVAENIEQYSKHLSLTSLAIYGGVDAAPHKKRLIEG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I+D  P++R+ L+
Sbjct: 129 VDILVATPGRLLDMYTQRAVHFDELTHLVLDEADRMLDMGFIEDINKIIDKLPQERQNLL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LAK   + A  + I+++  +   I+     V    +   I  +++ +  
Sbjct: 189 FSATLSPQVRFLAKTAVQHAKEIAISAKVGK-PKIEQWLTAVDKEKKSALISQLIKENDW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F  T+   ++    L +   Q  A+    SQ  R   L   + G+ R  +AT +A
Sbjct: 248 PQALIFIETKHGAAKLVSQLEKRDIQAEAIHSGRSQASREQVLADFKSGKVRYLVATGIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +RG+D+ DL  V++ +L   PE+ +HR GRTGRAG +G ++  +
Sbjct: 308 SRGLDIDDLARVVNYDLPFPPEDYVHRIGRTGRAGAQGEAISFV 351


>gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
          Length = 760

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 8/365 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      I  A+ ++ Y   T++Q   L   L  +DV+  A+TGSGKT AF L +
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S H + 
Sbjct: 287 IVHIM-DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   +  I+     
Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDI-TQVVNVIPSDAEKLPWLL 464

Query: 239 LRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF S +A+V      L  + F+V AL G+  Q  R   LQ  + G  
Sbjct: 465 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVH 524

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQR 354
            V IATDVAARG+D+  L+ V++ +++ + +  +HR GRTGRAG R G++  ++ Q   R
Sbjct: 525 HVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREAR 584

Query: 355 RAERL 359
            A  L
Sbjct: 585 FAGEL 589


>gi|322490800|emb|CBZ26064.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + ALA   L E
Sbjct: 112 VPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ + +APTRELA Q+  E E +      +   CI GG     +   L+ G
Sbjct: 172 P--LKAGDGPMVIVLAPTRELAQQI--EQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQG 227

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ LM
Sbjct: 228 VHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLM 287

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA ++QK+ VR+N+ S E   + D+    +L + + + + +  ++  H 
Sbjct: 288 FSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLMERHR 347

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VFC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDV
Sbjct: 348 NQRVLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDV 407

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFR 361
           AARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  Q  A  +F+
Sbjct: 408 AARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQ 466


>gi|326470514|gb|EGD94523.1| ATP-dependent RNA helicase HAS1 [Trichophyton tonsurans CBS 112818]
          Length = 568

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/376 (32%), Positives = 207/376 (55%), Gaps = 17/376 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 103 KAIAGMGFTTMTEIQQRGIPPSLAGRDLLGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 160

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 161 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 217

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK  R+ ++FSA
Sbjct: 218 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTMLFSA 277

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 278 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 336

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 337 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 396

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  + Q  +       RE
Sbjct: 397 AARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFL-QPSEVGFINHLRE 455

Query: 363 ANVSVVWEPAPSVEAI 378
           A V VV    P+   I
Sbjct: 456 ARVPVVEFEFPTKHII 471


>gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++   L  +G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   +
Sbjct: 18  PQIV-TGLMNKGFNFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNVPE 76

Query: 68  RFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   L++G  
Sbjct: 77  HTGRKVTQPRAIIMAPTRELAIQIYNDAKPLRESTGIRTALAYGGESYEKQLAKLEDGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLM 184
           I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+      PK R  ++
Sbjct: 137 ILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++     
Sbjct: 197 FSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEHKMPLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 DRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERILEQFTRGDVDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G SV
Sbjct: 317 ARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSV 357


>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
 gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
          Length = 808

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 190/372 (51%), Gaps = 29/372 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I + +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 389 PEII-DIIDRVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 447

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 448 IERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLG 507

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 508 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 567

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  +     
Sbjct: 568 TEEAEDESKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPTERT 627

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 628 EQIVYMMGENDKRKKLMEILSRSIDPPIIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 687

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRAG
Sbjct: 688 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG 747

Query: 340 RKGMSVFVIPQN 351
           + G+++  + ++
Sbjct: 748 KNGVAISFVTKD 759


>gi|126173575|ref|YP_001049724.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996780|gb|ABN60855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 472

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 20/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +   L AE+    
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVLEKLAAESLTSD 71

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 72  SNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +      + + ++FSAT
Sbjct: 132 VATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPQHQTMLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  LA+    +   VN+A +    S +      V    +   +  ++  +  +  +
Sbjct: 192 YSDAVKQLAEKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRNNWRQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  +  + RV +A
Sbjct: 251 VFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLRVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 303 TDVAARGLDIQALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEMLAE 360


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 187/348 (53%), Gaps = 22/348 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPASA- 74
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S + +E      + + AS  
Sbjct: 243 YTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPVLSQIYSEGPGEALQATKASTQ 302

Query: 75  ------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ RDL+
Sbjct: 303 QENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLE 362

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK- 179
            G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+  D+ P K 
Sbjct: 363 RGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 422

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ +MFSAT    I  LA+++ ++ + + +        +I  + V V  +D+ + ++++
Sbjct: 423 SRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDL 482

Query: 239 LRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR  +
Sbjct: 483 LNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPI 542

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 543 MVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 590


>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 581

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 179/346 (51%), Gaps = 4/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+   I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L   
Sbjct: 7   NLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPILHRLSQN 66

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  ++F       AL + PTRELA QV   +        +   V  GGV +  +   LQ
Sbjct: 67  PAAKNKFG-GKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQIERLQ 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D  +   ++++ ++ +VLDEAD MLD+GF  D++ +L   P  ++ 
Sbjct: 126 RGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVPGDKQS 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA +  K+   + +   N     I      V    +   + +I+  H
Sbjct: 186 LLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQVLRHIIEQH 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+   +   + L ++    +AL G  SQ  R+ AL   ++G  R  +ATD
Sbjct: 246 DWSQVLVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGDIRALVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++
Sbjct: 306 IAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLV 351


>gi|328478045|gb|EGF47932.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus MTCC 5462]
          Length = 313

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/298 (36%), Positives = 165/298 (55%), Gaps = 6/298 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +  + DR    
Sbjct: 14  KAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPILQHI-DKADR---- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R L +   IVVGTP
Sbjct: 69  -SIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLADHPQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DHI    L + HL  +VLDEADEMLD+GF DDIE I++  P +R+ L+FSAT+  A
Sbjct: 128 GRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTERQTLLFSATMPAA 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L   + K+ V V I ++      ++   V     ++ + +  +        A++F  
Sbjct: 188 IMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +ATDVAARG+D+
Sbjct: 248 TKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAARGLDI 305


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 185/342 (54%), Gaps = 3/342 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    E +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  A   ++ 
Sbjct: 195 NFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLPALVHVSA 253

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELAVQ+  E     + T +      GG     + RDLQ G 
Sbjct: 254 QPPLVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGV 313

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 314 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYW 373

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHG 243
           SAT    + TLA+ + ++  +V I S++ + +  I     +V  +++ N ++ +L+    
Sbjct: 374 SATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMD 433

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ +    +  +++ G+ +Q ER   L   + GR+ +  ATDV
Sbjct: 434 GSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDV 493

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+ D++ VI+ +  S+ E+ +HR GRTGRAG KG ++
Sbjct: 494 AARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAI 535


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 180/344 (52%), Gaps = 4/344 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E + + GYV  T +Q+  +      +D++  AQTGSGKT AF L + S +L E+      
Sbjct: 248 ENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPILSNILDESHDLE-I 306

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P A+ ++PTRELA+Q+  E       T + +++  GG S   +   +  G H+++ TP
Sbjct: 307 GKPQAVIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGTSFKYQNECITKGCHVLIATP 366

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATIS 190
           GRL D +    +  +  + VVLDEAD MLD+GF D +  I+     +   + LMFSAT  
Sbjct: 367 GRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKIMHHQTMRAEHQTLMFSATFP 426

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A  + ++ V V I       SD+      V   ++ + ++ ILR  GA   IVF
Sbjct: 427 EEIQRMAGEFLRNYVFVTIGVVGGACSDVQQTIYEVNKFNKRSKLMEILR-EGADGTIVF 485

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +        +E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG+D+
Sbjct: 486 VETKRAADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKNGTMKVLIATSVASRGLDI 545

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +++ VI+ ++ SN ++ +HR GRTGR G  G +      +  R
Sbjct: 546 KNVKHVINYDMPSNIDDYVHRIGRTGRVGNSGRATSFFDPDQDR 589


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 197/354 (55%), Gaps = 12/354 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + L   +  + +   
Sbjct: 14  ILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V  +   G  S+  +  +L+   HIVV 
Sbjct: 74  ------ALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVHIVVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + PK++ + +FSATI 
Sbjct: 128 TPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATID 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAK 245
             I  + + Y  D   +NI  EN   ++   R +   ++  + R+  I+   ++     K
Sbjct: 188 EEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ +  + +++DVA+
Sbjct: 247 SVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  ++  E +
Sbjct: 307 RGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360


>gi|195970701|gb|ACG60739.1| probable DEAD-box RNA helicase [Streptomyces flavoviridis]
          Length = 498

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL + G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 75  DMPGELLAALGKDGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 132 AGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASALRGGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            IVV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 192 EIVVATPGRLKDLIDRGDCRLNQISITVLDEADQMADMGFLPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 310 -RVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL   A 
Sbjct: 369 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPSQRRGMVRLMSNAG 428

Query: 365 V 365
           +
Sbjct: 429 I 429


>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
 gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
           1]
          Length = 485

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 10/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSP 71
           + L + GY   T +Q   +   L   DVL +AQTG+GKT AF L +   +  ++ +R  P
Sbjct: 15  QGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQIMWEDDQERREP 74

Query: 72  ASAPL---------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +              L ++PTREL+ Q+         KT +   V  GGV+ + + R+LQ
Sbjct: 75  SKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGGVNQNPQVRELQ 134

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G   +V TPGRL D +    +++  ++ +VLDEAD MLD+GF  D++ IL   P+ R+ 
Sbjct: 135 SGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKRILKFLPRDRQN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA     D V + IA +      I+     VA +D+   + + +   
Sbjct: 195 LLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQADKPRLLNHFIETK 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + +VF  T+       + L +   +  A+ G  +Q  R   L   ++    V +ATD
Sbjct: 255 ATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDVLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           VAARGID+  ++ VI+ +  + PE  +HR GRTGRAGR+G +V 
Sbjct: 315 VAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 358


>gi|312210932|emb|CBX91018.1| hypothetical protein [Leptosphaeria maculans]
          Length = 516

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/334 (34%), Positives = 183/334 (54%), Gaps = 9/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q   +   L  +DV+  A+TGSGKT AF L +   LL +        A   L 
Sbjct: 107 FTTPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPILQALLDK------PQALFGLI 160

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+ ++++ L +   V  A  +GG+ +  +   L    HIVV TPGRL DH+
Sbjct: 161 LAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIVVATPGRLLDHL 220

Query: 140 RG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLA 197
              KG ++ HLK +VLDEAD +LDL F   ++ IL   P+  R   +FSAT+S  + +L 
Sbjct: 221 ENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILRVLPRDGRHTYLFSATMSSKVESLQ 280

Query: 198 KNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   ++ VRV+I+S + Q  S +  R + +    +D  ++++L  +     I+F  T   
Sbjct: 281 RAALQNPVRVSISSSSHQVVSTLLQRYLFIPHKHKDLYLIHLLTDNIGHPTIIFTRTVNE 340

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R   +L    F  + L G+LSQ  R  AL   +     + +ATDVA+RG+D+P ++LV
Sbjct: 341 TERIAILLRALGFGAIPLHGQLSQSARLGALNKFKTKSRDILVATDVASRGLDIPAVDLV 400

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++ +L S+ +  +HR GRT RAG+ G +   + Q
Sbjct: 401 VNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQ 434


>gi|297193469|ref|ZP_06910867.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151793|gb|EDY62163.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 681

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 190/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   +
Sbjct: 72  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGGH 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 132 ---TEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 188

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 189 VLVATPGRLRDIINRGACSLENVRVAVLDEADQMSDLGFLPEVTELLDQIPAGGQRMLFS 248

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  D V   + S     + + +  ++V   D+      I    G   
Sbjct: 249 ATMENEISTLVKRYLTDPVTHEVDSAQGNVTTMSHHVLVVKPKDKAPVTAAIAARKG--R 306

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   ++G     +ATDVAAR
Sbjct: 307 TIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKEGYVNALVATDVAAR 366

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V
Sbjct: 367 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLSLPHQRRQIFRLMEDAGV 425


>gi|282862091|ref|ZP_06271154.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282563116|gb|EFB68655.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 545

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 190/363 (52%), Gaps = 8/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L   
Sbjct: 68  DMPGALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LART 124

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +   APLA+ + PTRELA QV   L        + VA  +GG+S+ R+   L+ GA
Sbjct: 125 AGRRAQPHAPLAMVLVPTRELAQQVTDALTPYATSVNLRVATVVGGMSISRQAGSLRRGA 184

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L    P  +RML 
Sbjct: 185 EVLVATPGRLKDLIERGDCRLDEVTVTVLDEADQMADMGFMPQVVALLKQVEPDGQRML- 243

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHG 243
           FSAT+   I  L K +  D V  ++       + +++  + VA  +D+      I    G
Sbjct: 244 FSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVADETDKKAVATRIAAREG 303

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +AT+V
Sbjct: 304 --RVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNV 361

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL  +A
Sbjct: 362 AARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMADA 421

Query: 364 NVS 366
            ++
Sbjct: 422 GIA 424


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 179/343 (52%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 200 YKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFS 259

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 260 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 319

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ 
Sbjct: 320 LLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQT 379

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V  +D+ + +++IL  H
Sbjct: 380 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDNDKRSVLLDILHTH 439

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+  R+ R  + +AT 
Sbjct: 440 GTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQRERERALEYFRNARCPILVATA 499

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 500 VAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 542


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 179/352 (50%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E  
Sbjct: 150 PEPILKMLKAKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPLIMIALQEEI 209

Query: 68  RFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVV------VAVCIGGVSVHRERR 119
                P   P+ L + P+RELA Q    +E                 +CIGGV +  +  
Sbjct: 210 MMPIMPGEGPVGLIVCPSRELARQTYEVVEEFLIPMRAAGYPELRPLLCIGGVDMRSQLE 269

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HIVV TPGRL D +  K +++ + + + LDEAD ++DLGF DDI  + D    +
Sbjct: 270 VVKKGVHIVVATPGRLKDMLAKKKMSLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 329

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  L
Sbjct: 330 RQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 389

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VFC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V +
Sbjct: 390 Q-KTPPPVLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSFKAGKKDVLV 448

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 449 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 500


>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 483

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 188/346 (54%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 103 NICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIPILQELKYK 162

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   + +    GGV +  +  +L    
Sbjct: 163 KQSF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQSLNLAKKP 216

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++ TPGR+ DH+   KG N+ +LK +V DEAD++L L F   I  +L   P  R   +
Sbjct: 217 NIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILPNNRITFL 276

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ +++ ++++      +    + + L  +   + ++  Y   
Sbjct: 277 FSATMTKSVAKLKKASLKNPIKIEVSNKYSTVKTLIETYIFLPLKYKYTYLCSLCFYFTN 336

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KN I+F +T A+  +          + + L G+L+Q +R ++L + +  +  + I+T V 
Sbjct: 337 KNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNILISTQVG 396

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+DL ++++VI+ +L S  E  +HR GRT RAG+ G S+  + Q
Sbjct: 397 ARGLDLQNIKIVINFDLCSCKE-YIHRVGRTARAGKTGKSITFVTQ 441


>gi|75321947|sp|Q5Z6G5|RH35B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35B
 gi|53793229|dbj|BAD54454.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
 gi|125598365|gb|EAZ38145.1| hypothetical protein OsJ_22496 [Oryza sativa Japonica Group]
          Length = 619

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 179/353 (50%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  AL  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 180 LPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEE 239

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRER 118
                 P   P  L + P+RELA Q    +E   A         +   +CIGGV +  + 
Sbjct: 240 ILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQM 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 300 EVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     + VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G    +ER +A +  +     V 
Sbjct: 420 LQ-KTPPPVLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D+PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 479 VATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKN 531


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 281 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 339

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 340 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 398

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 399 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 458

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 459 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 518

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 519 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 578

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  
Sbjct: 579 TDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 638

Query: 358 RLFREANVSV 367
           ++  EAN ++
Sbjct: 639 KVLEEANQAI 648


>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
 gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
          Length = 427

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 187/340 (55%), Gaps = 10/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           +A++ +GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   L     A N++
Sbjct: 7   KAIALKGYTCPSPIQVQAIPAVLSGRDVMAAAQTGTGKTAGFTLPMLERLRHGPHARNNQ 66

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   +L + PTRELA QV   ++       +   V  GGV V+ + + L+ GA ++
Sbjct: 67  VR------SLVLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRRGADVL 120

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSAT
Sbjct: 121 VATPGRLMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQKILALLPPKRQNLLFSAT 180

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P+I  LA       +++    ENR    ++       ++ + + + +++R +  +  +
Sbjct: 181 FNPSIRKLAHGLLHQPLQLQATPENRAAPLVEQVMHPCDMARKGDLLSHLIRSNDWQQVL 240

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   +R  + L++     +A+ G  SQ  R+ AL   + G  RV +ATD+AARG+
Sbjct: 241 VFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAARGL 300

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L  V++ +L +  E+ +HR GRTGRAG+ G ++ ++
Sbjct: 301 DIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGHALSLV 340


>gi|270307613|ref|YP_003329671.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
 gi|270153505|gb|ACZ61343.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
          Length = 561

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 174/330 (52%), Gaps = 6/330 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P +   DV+  AQTG+GKT A+ L +   +L+     +P      L
Sbjct: 20  GYQEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPIIQKMLS-----TPRGRVRTL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA Q+      L  +  +      GGV++ ++ R L++G  +VV  PGRL DH
Sbjct: 75  VIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    +++  ++ +++DEAD M D+GF+ DI+ IL    +  + L+FSAT+ P +  L +
Sbjct: 135 IWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTQ 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
             Q + V + + ++    S + +    V    +   ++ IL+    K+ ++F  T+    
Sbjct: 195 ESQTNPVTIQVGTQA-PASSVSHSVYPVKSHQKTPLLIEILKTVETKSVLIFARTKYGAE 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                +++  F   +L G LSQ  R   ++  R    ++ +ATD+AARG+D+  +  VI+
Sbjct: 254 NLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRRNFKILVATDIAARGLDIDHISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++   PE+  HR GRTGR  R G ++ ++
Sbjct: 314 FDMPDTPEDYTHRIGRTGRFDRTGQALSLV 343


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/340 (36%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   ++ V V+     R+   I    YRA    +  +   +V++L+   A  +I
Sbjct: 195 AIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRAD--NIEHKTALLVHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGI
Sbjct: 253 VFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++    +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGTAISLV 352


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +++ GY   T +Q A +   ++ +D++  A TGSGKT +F L L   +  L 
Sbjct: 374 LPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELP 433

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S   +   L+
Sbjct: 434 RIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLR 493

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 494 NGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 553

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I S      
Sbjct: 554 PDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVD 613

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   +A  D+    +  +   G      IVF + + +     + + +  F  V L 
Sbjct: 614 TVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLH 673

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G+  V +ATD+A RGID+PD+ LVI+  +++  E+  HR GRT
Sbjct: 674 GSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIESYTHRIGRT 733

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 734 GRAGKSGVAI 743


>gi|91792542|ref|YP_562193.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714544|gb|ABE54470.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 465

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 192/385 (49%), Gaps = 25/385 (6%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APL 76
           +  V+ T +Q   +   L+ KDVL  AQTGSGKT+AFGL +   LL +    S A   P 
Sbjct: 47  KALVSATDIQRLAIPAGLKGKDVLALAQTGSGKTLAFGLVILEKLLLQAKEKSVAQDKPS 106

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL I PTRELA QV  EL  +  K  +  A+  GG  + ++   L  G  +++ TPGRL 
Sbjct: 107 ALVIVPTRELAQQVHHELNTVAMKLNLTSAIVCGGADLDKQIDALAQGPQLLIATPGRLL 166

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             ++ K +++S +K +VLDEAD +L++GF  DI+ I+   P   + L+FSAT+   +  L
Sbjct: 167 ALVQEKAVSLSDIKHLVLDEADRLLEMGFWPDIQKIIAFIPANCQKLLFSATLPVPLREL 226

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--------- 247
           A +      R+   + + Q ++I+ RA LV    +  A++ +L+    K A         
Sbjct: 227 ADSLLYKPQRIEAKAASTQVAEIEERAYLVNKGSKAQALIALLKDAPLKQAGNKQTGIKQ 286

Query: 248 -----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +       K L +      AL G+  Q  R   L   + G   V +ATD
Sbjct: 287 PSLQTLVFINGKDDADSLAKKLNKAGLNAKALHGDKEQNIREQTLAEFKQGTVTVLVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----------QNM 352
           + ARGI L +L  VI+  L  +    +HR GRTGRAG KG+++ ++           +  
Sbjct: 347 LLARGIHLSELPQVINFALPESGATYVHRIGRTGRAGAKGLAISLVCHGESQYLEAIEAF 406

Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377
            +R  RL   A   V  +PAP   A
Sbjct: 407 TQRPLRLDALAGFPVTDKPAPETAA 431


>gi|327405507|ref|YP_004346345.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321015|gb|AEA45507.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/342 (35%), Positives = 182/342 (53%), Gaps = 21/342 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ    +L + G  +L  +Q  +L    +  ++++ A TGSGKTVAF       LL  
Sbjct: 2   NTPQS-NFSLEKLGITSLNEMQNEMLQTSEKNSEIILHAPTGSGKTVAF-------LLTA 53

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + +P  S+   L IAPTREL++Q+    + L   TG  V  C GG S+  E  +L   
Sbjct: 54  LTKLNPDQSSVQLLIIAPTRELSIQIEDVFKKL--STGFKVNTCYGGHSIRVEENNLSVP 111

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGRL DH+R   +++S + ++VLDE D+ L++GF  D+  I+      +   +
Sbjct: 112 PAVLIGTPGRLADHVRRSNIDLSEVHSLVLDEFDKSLEMGFESDMTEIIQELKSLQNKYL 171

Query: 185 FSAT-IS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            SAT +S  PA T + K     AV ++  +EN+    I+Y  V +  SD+   +  +L  
Sbjct: 172 VSATKLSEIPAFTQIKK-----AVTIDFTNENKHQ--INYFGVQIGDSDKQELLFELLCN 224

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+FC+ R  V   T  L E+    VA  G + Q +R  AL   R+G A   ++T
Sbjct: 225 LPEGKTIIFCNHREPVVEITDFLRENGVIAVAYHGGMEQDDRERALIRFRNGSADFLVST 284

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           D+AARG+D+P +E VIH +LS      +HRSGRTGR    G+
Sbjct: 285 DLAARGLDIPAVEHVIHYQLSLKEPEFIHRSGRTGRQDAPGV 326


>gi|297529359|ref|YP_003670634.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|297252611|gb|ADI26057.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+       LL   ++  
Sbjct: 15  IIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY-------LLPIIEKIK 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
           P  A + A+  APTRELA Q+  E   +     K  ++VA C IGG    +    L    
Sbjct: 68  PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    PK  +ML+F
Sbjct: 128 HIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SATI   +    K Y ++   V++  +   + +I++  VL+ L  R+    + ++L  + 
Sbjct: 188 SATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEH--VLIPLRGREKTKLLRDVLLSYN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   +  +ATD+
Sbjct: 246 PYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQYVVATDL 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    RL
Sbjct: 306 AARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIARL 361


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 177/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L     +  +         P AL
Sbjct: 41  GFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQCIDPK------VRDPQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     V V  CIGG  V  + R L+ G HIV GTPGR+   
Sbjct: 95  ILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEAGVHIVSGTPGRVFHM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +  +  H+K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   +  +  
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D  RV +  +      I    V V     + + + ++        A++FC+T+A V
Sbjct: 215 KFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTLTITQAVIFCNTKAKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + + E  F V  + G++ QQER   ++  R G++RV IATDV  RG+D+  + LVI
Sbjct: 275 EWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATDVWGRGLDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L ++ E  +HR GR+GR GRKG+++
Sbjct: 335 NYDLPNSRELYIHRIGRSGRFGRKGVAI 362


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 195/361 (54%), Gaps = 9/361 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++   G+   +++Q+  + P ++ ++++  AQ+G+GKT AF + +    L + D  S   
Sbjct: 32  SIYSYGFEKPSAIQQRAIVPLMQGRNLIAQAQSGTGKTAAFSIGV----LQQIDTNSKVC 87

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ ++PTRELA+Q    ++ L     +    CIGG SV      L+NG  +VVGTPG
Sbjct: 88  Q--AILLSPTRELALQTQEVVKNLSQYLDIKTFACIGGTSVRETIEALRNGVQVVVGTPG 145

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +  + ++ + +K ++LDEADEML  GF+D +  IL S P   ++ MFSAT+    
Sbjct: 146 RVLDMLDRQAIDPNTVKYLILDEADEMLSQGFKDQMYTILKSLPSTVQVGMFSATMPADA 205

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             ++K + ++ V++ +  E      I    + V   + + + ++++ +      +++FC+
Sbjct: 206 LDISKKFMENPVKILVKKEELTLEGIKQFYIDVVKDEYKIDTLIDLYQVISVNQSVIFCN 265

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           ++  V    + L  H + V    G+L+ +ER+N L   R G  R+ I TD+ +RGID+  
Sbjct: 266 SKNRVEWIQRRLQAHNYPVSITHGDLTMEERNNVLNEFRQGATRILITTDMLSRGIDVQQ 325

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + LVI+ ++  + E+ +HR GR+ R GRKG+++  I         RL +     +V  P 
Sbjct: 326 VSLVINFDMPVSDESYIHRIGRSARFGRKGVAIDFITTEEMDTINRLQKTYETKIV--PL 383

Query: 373 P 373
           P
Sbjct: 384 P 384


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 176/342 (51%), Gaps = 2/342 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ GY   T +Q   +   L  +D+L  AQTG+GKT AF L +   L A+    +P  
Sbjct: 16  ALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLHHL-ADRKAPAPRG 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELA Q+   +       G+  AV  GGV    +   L+ G  ++V TPG
Sbjct: 75  GCRALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQVEALRRGVDVLVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++     +  ++ +VLDEAD+MLD GF   ++ +     K R+ L FSAT+   I
Sbjct: 135 RLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSKNRQTLFFSATMPAEI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +A    KD  +V++         I+ + + +  S +   +  +LR  G   A+VF  T
Sbjct: 195 AKIAAEMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEMLRQPGIGRALVFART 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R TK L        A+ G+ SQ +R  AL   R GRA + +ATD+A+RGID+  +
Sbjct: 255 KHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPILVATDIASRGIDVDGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
             V   +L   PE  +HR GRT RAG  G ++ F  P  + +
Sbjct: 315 THVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAK 356


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 156 FPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 214

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 215 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGKSSRIRNTCVYGGVPKGGQIRDLAKGV 273

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL      R+  M+
Sbjct: 274 EVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMW 333

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA +Y  D ++VNI S   +  H       V+     RD    ++ +   
Sbjct: 334 SATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME 393

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 394 DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 453

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q++A  L
Sbjct: 454 DVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDL 511


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 187/359 (52%), Gaps = 14/359 (3%)

Query: 4   FENIPQV-IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           F+++P+  +G     + +   T +Q          +DV+  A+TGSGKT+ FGL     L
Sbjct: 83  FDHLPECDVGLYTQLKSFPAPTPIQSTTWPLLFAGRDVIGIAETGSGKTLGFGLPCLKKL 142

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +  + + S    P A+ I+PTRELA+Q+  +L          V    GGV    +RR LQ
Sbjct: 143 I--DSKSSKPCQPKAVIISPTRELAMQIYDQLVKFGHHEKTQVTCIYGGVGKDEQRRALQ 200

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             A IVV TPGRL D      +++  +  +VLDEAD MLD GF  DI+ IL   P  RR 
Sbjct: 201 KAA-IVVATPGRLKDLQNDGSIDLGKVNYLVLDEADRMLDKGFEQDIKDILKPMPVSRRQ 259

Query: 183 -LMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +MF+AT   ++  LA  + K  V V I    +++ R ++ I     +V   +++  +V 
Sbjct: 260 TVMFTATWPRSVRDLAATFMKTPVTVTIGGDPSADPRANTRIKQVVEVVDGREKEGRLVQ 319

Query: 238 ILR-----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +L          +  +VFC  +    R   ++    F V  + G+L+Q +R   L   + 
Sbjct: 320 LLTKSQRGQKSPEKVLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDAFKK 379

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G A V IATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG  G+++ +  +N
Sbjct: 380 GNATVLIATDVAARGLDIPNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFTEN 438


>gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
 gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
          Length = 517

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 18/350 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ER      ++QE  L   L   D++  A+TG GKT AFG+ L   + +         
Sbjct: 27  ALGERDIECPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRVSSGTGVRPLTG 86

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKT------GVVVAVCIGGVSVHRERRDLQN 123
           AP AL + PTREL +QV  +L    ++L A T       + V    GG +   +   L+ 
Sbjct: 87  APRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGGRAYEPQIEALRA 146

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ +
Sbjct: 147 GADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPADRQSM 206

Query: 184 MFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNI 238
           +FSAT+   I TLA+ +  Q   +R         H   +   YRA  +   D+   +  +
Sbjct: 207 LFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL---DKVELVTRV 263

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G   V 
Sbjct: 264 LQARERGATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFRSGSVNVL 323

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 324 VATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 373


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 199/362 (54%), Gaps = 22/362 (6%)

Query: 4   FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F N P   Q I   L +RG   L  +Q    +     +DV+  A+TG+GKT +F + L  
Sbjct: 184 FSNFPISEQTI-RLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTE 242

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  + +       P  L + PTRELA QV ++ + +   T  +   C  G + +  + D
Sbjct: 243 KLQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDI---TRTLTVACFYGGTPYNGQID 299

Query: 121 L-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L + G  I+VGTPGR+ DH+    L+++ L  VVLDE D+MLD+GF +D+E I+  +  +
Sbjct: 300 LIRKGIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGAYNR 359

Query: 180 R-----RMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDR 231
                 + L+FSAT    +  +AK Y K    +V++  +  Q   + +++ A+    + R
Sbjct: 360 ESEDNPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQR 419

Query: 232 DNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQ 288
              I ++++ Y G +  AIVFC T+   +     L  ++ Q   AL G+++Q +R   L+
Sbjct: 420 AAVIGDVIQVYSGNQGRAIVFCETKKDATEM--ALNSNIKQEAQALHGDIAQSQREITLK 477

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FV 347
             R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ + F 
Sbjct: 478 GFRNGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFF 537

Query: 348 IP 349
            P
Sbjct: 538 QP 539


>gi|111023386|ref|YP_706358.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110822916|gb|ABG98200.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 481

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFS 70
           +AL+++G  +   +Q   L   L  +DVL   +TGSGKT+AF + + S L  E    +  
Sbjct: 29  KALADKGITSPFPIQVDTLPDTLSGRDVLGRGKTGSGKTLAFSIPMVSRLAGELSGGKRR 88

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P+ L +APTRELA Q+   LE L A   + V    GGVS +R+   L+ G  IVV 
Sbjct: 89  PGR-PVGLILAPTRELATQITAALEPLAAAYDLRVTTIFGGVSQNRQVSALKAGVDIVVA 147

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL D ++ K +++  ++  VLDEAD M DLGF   +  IL ++P+  + L+FSAT+ 
Sbjct: 148 CPGRLEDLMKQKFVSLDAVEITVLDEADHMADLGFLPVVTRILTATPQHGQRLLFSATLD 207

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L K + K+ V  ++   N   + + +    V   +    +V  L   G    I+F
Sbjct: 208 NGVDKLVKRFLKNEVLHSVDEANSPVAAMTHHVFDVDGVEAKRKLVERL-ASGTGRRILF 266

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L E     V L G LSQ  R   L     G ARV +ATDVAARG+ +
Sbjct: 267 MRTKHQARKLARQLTEAGIPSVDLHGNLSQAARDRNLASFSAGEARVLVATDVAARGVHV 326

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            D++LV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R+A + V 
Sbjct: 327 DDVQLVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVVLPEQRKDLAVLMRKAAIKVT 384


>gi|288916173|ref|ZP_06410553.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288352364|gb|EFC86561.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 479

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 184/368 (50%), Gaps = 17/368 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++R  +    VQ A L   L  ++VL  A+TGSGKT+AFGL L + L A      PA 
Sbjct: 3   ALADRKILAPFPVQAATLPDVLAGENVLGRARTGSGKTLAFGLPLLARLSATG----PAR 58

Query: 74  A--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  L + PTRELA QV   L  L    G+ +    GG S+ R+   ++ G H+VV T
Sbjct: 59  PRQPRGLILVPTRELAQQVNDVLAPLTRALGLWMTPVYGGTSISRQISAMRRGVHLVVAT 118

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I      +  ++  VLDEAD M DLGF   ++ +LD +P   + L+FSAT+  
Sbjct: 119 PGRLTDLIERDACLLDEIEITVLDEADFMCDLGFLPAVKALLDMTPSGSQRLLFSATLDR 178

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNA 247
            +  L ++Y  + V V I  E  Q S +       AL   D A    +V  L   GA   
Sbjct: 179 EVEVLVRSYLPEPVLVAIDPEVSQVSTLARH----ALESVDRAAQLRLVTAL-AGGAGRT 233

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+    R  + L E       L G + Q  R+ AL    DG  RV +ATDVAARG
Sbjct: 234 LVFVRTQRDADRVAQALTEAGVPAEPLHGGMPQGARTRALAGFTDGFYRVLVATDVAARG 293

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           I +  + LV+H     +P+   HR GRT RAG  G  V V     + +A  L R   V V
Sbjct: 294 IHVDGISLVLHLGPPDDPKTYQHRGGRTARAGADGADVLVTVPAERGKARSLLRA--VGV 351

Query: 368 VWEPAPSV 375
             +P P++
Sbjct: 352 PAQPVPTL 359


>gi|225678019|gb|EEH16303.1| ATP-dependent RNA helicase dbp3 [Paracoccidioides brasiliensis
           Pb03]
          Length = 486

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/324 (36%), Positives = 186/324 (57%), Gaps = 13/324 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+  A+TGSGKT+AFG+     +L  N   S +S   A+ I PTRELA Q+  +L   
Sbjct: 108 RDVIGVAETGSGKTLAFGVPCIRKVLEINGSRS-SSRISAVIITPTRELATQIYDQL-IK 165

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           +    V +A   GG S   +RR L+  A +VV T GRL D    + L +  +K +VLDEA
Sbjct: 166 FTPNNVGIACIYGGASKDDQRRALKK-ASVVVATTGRLKDFQGDESLRLDKVKYLVLDEA 224

Query: 158 DEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNI---ASE 212
           D MLD GF  DI+ I+ + P  KKR+ +MF+AT   ++  LA  + KD V + I   +S+
Sbjct: 225 DRMLDKGFEQDIKDIVGAMPSSKKRQTVMFTATWPISVRKLAATFMKDHVTITIGDLSSD 284

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA----IVFCSTRASVSRFTKVLAEH 267
            R ++ I     ++   D+++ ++++L +Y   KNA    +VFC  +   +R  + +   
Sbjct: 285 IRANTRIKQIVEVLKPEDKEHRLLSLLNQYQRGKNAMDKVLVFCLYKKEATRIERFIRSK 344

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F+V  + G+++Q ER  +L   + G   + +ATDVAARG+D+P + LV++       E+
Sbjct: 345 GFKVAGIHGDMNQTERFKSLDAFKSGAVPLLVATDVAARGLDIPAVRLVLNVTFPLTVED 404

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQN 351
            +HR GRTGRAG  G+++ +  +N
Sbjct: 405 YVHRIGRTGRAGADGLAITMFTEN 428


>gi|145540724|ref|XP_001456051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423861|emb|CAK88654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 660

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 191/365 (52%), Gaps = 28/365 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P+ +  ++    YV  T +Q   +   L  KD++  A TGSGK+ AF + L    STL 
Sbjct: 242 LPKNLMNSIRNLNYVKPTPIQMQTIPIGLERKDMIGIAPTGSGKSAAFLIPLITYLSTLP 301

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++D+      P AL +AP RELA+Q+  E + L     +   V +GG     +   L+ 
Sbjct: 302 KQDDKIC-KDGPYALIMAPARELAIQIEAEFQKLSQGYNLRSFVIVGGRKEEEQEFHLKK 360

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  I++GTPGR+ D +  K L +     +VLDEAD+M+DLGF  D+ +ILDS   +    
Sbjct: 361 GIEILIGTPGRIKDLLMKKYLVLEQCSWIVLDEADKMIDLGFEQDVNYILDSITTQMKSE 420

Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R   +FSAT+ P +  LAK Y +    ++I        DI+
Sbjct: 421 DEIAAELEEKLAQAGERQYRVTHLFSATMPPQVEKLAKRYLRAFCFISIGEPGGGKKDIE 480

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +  ++  + + N ++ +L  +     I+F + + SV   +K L ++ +  V   G  +Q
Sbjct: 481 QKIDMINEAAKKNRLLQLLASNKPP-IIIFANQKKSVEILSKTLEKYGYNSVVYHGSKTQ 539

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           Q+R  A++  +  +  + IATD+A+RG+ +  +++VI+ +   N ++ +HR+GRTGRAG+
Sbjct: 540 QQREAAVEGFKSKKIDILIATDLASRGLHVEGVQMVINFDAPKNIQDFIHRTGRTGRAGK 599

Query: 341 KGMSV 345
           +G++V
Sbjct: 600 RGLAV 604


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 192/356 (53%), Gaps = 10/356 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+     + +AL +  + + T +QE  +   L   DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FENLDLNDNVLDALYDMRFDSCTPIQEKTIPEILNGHDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---E 117
           L   +D   P  A   + ++PTRELA Q+ + ++   Y   GV      GG   +R   E
Sbjct: 63  L---DDGGYPEGAINCVVMSPTRELAQQIDQAMQGFGYYLQGVSSIAVYGGNDGNRYDQE 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA +V+ TPGRL  HI    +++S +   +LDEAD MLD+GF DDI+ I    P
Sbjct: 120 VKSLKLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKELP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + +MFSAT+   I  LAK   K+ + + +A  ++    I   A +   + +   I +
Sbjct: 180 QTCQTIMFSATMPEKIEDLAKTLLKNPIEIKLAV-SKPAEKIKQSAYICYETQKLGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  IVFC ++  V +    L         +  +L+Q+ER++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ ++ +  Q
Sbjct: 299 LVATDIVSRGIDIDDITMVINYDVPHDTEDYVHRIGRTARADRDGVAITLVSEEDQ 354


>gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
 gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
          Length = 517

 Score =  184 bits (467), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 182/350 (52%), Gaps = 18/350 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ER      ++QE  L   L   D++  A+TG GKT AFG+ L   + +         
Sbjct: 27  ALGERDIEGPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRVSSGTGVRPLTG 86

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKT------GVVVAVCIGGVSVHRERRDLQN 123
           AP AL + PTREL +QV  +L    ++L A T       + V    GG +   +   L+ 
Sbjct: 87  APRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIYGGRAYEPQIEALRA 146

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ +
Sbjct: 147 GADVVVGTPGRLLDLSQQGHLQLGGLYVLVLDEADEMLDLGFLPDIERILRQIPADRQSM 206

Query: 184 MFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNI 238
           +FSAT+   I TLA+ +  Q   +R         H   +   YRA  +   D+   +  +
Sbjct: 207 LFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAHAL---DKVELVTRV 263

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G   V 
Sbjct: 264 LQARERGATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKALKSFRRGSVNVL 323

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 324 VATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 373


>gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665869|emb|CAZ36555.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 730

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L + +  L
Sbjct: 306 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 365

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 366 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 425

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL   P     
Sbjct: 426 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 485

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 486 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 545

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL        I+F + +       K L +  +  V L G 
Sbjct: 546 RVEQIVYMVSEQEKRRKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGYSAVVLHGG 605

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 606 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 665

Query: 338 AGRKGMSVFVI 348
           AG+ G+++ ++
Sbjct: 666 AGKSGIAISLL 676


>gi|145474053|ref|XP_001423049.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124390109|emb|CAK55651.1| unnamed protein product [Paramecium tetraurelia]
          Length = 651

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 206/391 (52%), Gaps = 35/391 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           + L  RG  NL  +Q+          D++   +TGSGKT+A+ L +   +    L +N  
Sbjct: 38  KVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERIRGLGLKQNKN 97

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P  L + PTRELA+QV  E    L+ +    +    GG  +  +   ++ G  I
Sbjct: 98  ------PYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQIDQVRQGCEI 151

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFS 186
           VVGTPGR+ D +  K L +  ++ VVLDEAD+ML+ GF+++IE I+   + +K +ML+FS
Sbjct: 152 VVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNERKIQMLLFS 211

Query: 187 ATISPAITTLAKNY-QKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           ATI   +  L+  Y + +   +N+    E +  + + + A+  A +    AI +++  +G
Sbjct: 212 ATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGAIGDVVSVYG 271

Query: 244 AKNA--IVFCSTRASVSRF---TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            ++A  I+FC T+   +     +K+ AE       L G++ QQ+R+   +  ++G+ +  
Sbjct: 272 GRHARTIIFCETKRECNEIILHSKLPAE----TQPLHGDIPQQQRTVTFEGFKNGKFKCL 327

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D P ++L+I      + E+ +HRSGRTGRAG+ G  + +I        ER
Sbjct: 328 VATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGKDMGLI--------ER 379

Query: 359 LFREANVSVVWEPAPSVEAI---RERDAQRI 386
           + R A +  +   AP  + I     RD Q I
Sbjct: 380 VERVAKIKFIKISAPQHQDIIKASSRDLQTI 410


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/343 (34%), Positives = 188/343 (54%), Gaps = 12/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+     +FS 
Sbjct: 255 VTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMADGVAASKFSE 314

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +I+ GT
Sbjct: 315 VQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTGYTIREVLKGCNILCGT 374

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ LMFS
Sbjct: 375 PGRLLDIIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSPGMPSKEDRQTLMFS 433

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   + V    + + ++++LR  G +
Sbjct: 434 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLRSTGTE 493

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 494 RTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 553

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG--RKGMSVF 346
           RG+D+  ++ V++ +L S+ +  +HR GRTGR G  R+ +S F
Sbjct: 554 RGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFF 596


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L+  D+   AQTG+GKT+AF +A    LL  N+  S  +
Sbjct: 22  ALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHHLLT-NECQSNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+  + E L   + + +A+  GG    ++   ++ G  I+VGT G
Sbjct: 81  QPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIEKGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++   PK  +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGIINLDCVQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  V I    R    I       +  D+   ++ +L     +  ++F 
Sbjct: 201 RVRELAYEDMNNASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + L     +V  L+G+++Q++R   L     G   + +ATDVAARG+ +P
Sbjct: 261 NTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 321 EVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSI 354


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 190/358 (53%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 141 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQ- 199

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E++  + ++  +   C+ GGV    + RDL  G 
Sbjct: 200 PLLAPGDGPIVLVLAPTRELAVQIQEEMK-KFGRSSRIRNTCVYGGVPKGPQIRDLSRGV 258

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 259 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 318

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++ +D ++VNI S      H       V+  +  RD  I ++ +   
Sbjct: 319 SATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIKHMEKVME 378

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 379 NKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 438

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG  G ++ +   + Q++A  L
Sbjct: 439 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDL 496


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/328 (33%), Positives = 177/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L     +  +         P AL
Sbjct: 41  GFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQCIDPK------VRDPQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     V V  CIGG  V  + R L+ G HIV GTPGR+   
Sbjct: 95  ILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRALEAGVHIVSGTPGRVFHM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +  +  H+K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   +  +  
Sbjct: 155 IAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPSTQVVLVSATLPHEVLEMTT 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D  RV +  +      I    V V     + + + ++        A++FC+T+A V
Sbjct: 215 KFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLYDTLTITQAVIFCNTKAKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + + E  F V  + G++ QQER   ++  R G++RV IATDV  RG+D+  + LVI
Sbjct: 275 EWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLIATDVWGRGLDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L ++ E  +HR GR+GR GRKG+++
Sbjct: 335 NYDLPNSRELYIHRIGRSGRFGRKGVAI 362


>gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
 gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
          Length = 423

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 181/340 (53%), Gaps = 5/340 (1%)

Query: 19  GYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           G+ + T +Q   + P +R+  D+L +AQTG+GKT AF L +   ++ E   +     P  
Sbjct: 22  GFTSPTPIQMKAI-PLVRQGYDLLAAAQTGTGKTAAFVLPMLQKIIEEPTLYQ-KRVPRV 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA QVG  +  L    GV  AV  GGV ++ ++  +  G   +V TPGRL D
Sbjct: 80  LVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAKGLDFLVATPGRLLD 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +     ++S    ++LDEAD MLD+GF  D++ IL + P  R+ L+FSAT SP I  LA
Sbjct: 140 LMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQTLLFSATFSPEIKKLA 199

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             +      V I   N+  S +      V  +D+   + +++  +     +VF  T+   
Sbjct: 200 SEFLNKPESVEI-ERNKDSSLVRQTLYRVPKADKHTVLRDLIVDNQWDQVLVFTRTKYGA 258

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +  + L +      A+ G+ SQ  R+ AL+  ++ +  + +ATD+AARG+D+  L  V+
Sbjct: 259 DKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILVATDIAARGLDIEKLPQVV 318

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           + EL    E+ +HR GRTGRAG  G +   V P+ + + A
Sbjct: 319 NYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLA 358


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PQVI-EALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PAS+      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PASSERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 EDGVDILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSI 357


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 187/341 (54%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL ++ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLL-DSG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +      AL +APTRELA Q+   ++     T + V    GG  +  +   L+NG  I
Sbjct: 68  RTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSALENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    +++++L+ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|116205599|ref|XP_001228610.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|118572553|sp|Q2GMX1|HAS1_CHAGB RecName: Full=ATP-dependent RNA helicase HAS1
 gi|88176811|gb|EAQ84279.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 586

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 193/344 (56%), Gaps = 15/344 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   + RF P +
Sbjct: 126 SINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--NSLRFKPRN 183

Query: 74  APLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               + + PTRELA+Q   V REL   +++T     V IGG ++  E   L  G ++++ 
Sbjct: 184 GTGVIVVTPTRELALQIFGVARELMKNHSQT---YGVVIGGANIRAEEDKLGKGVNLLIA 240

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATI 189
           TPGRL DH+R       +LK++++DEAD +L++GF D++  I+   PK+ R+ ++FSAT 
Sbjct: 241 TPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQTMLFSATQ 300

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAK 245
           +  +  LA+ + +   + +N+  E +Q S +   D   V+V    R   + + L+    K
Sbjct: 301 TTKVEDLARISLRPGPLYINV-DEEKQFSTVEGLDQGYVIVDADKRFLLLFSFLKKMAKK 359

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      + +    I TDVAA
Sbjct: 360 KIIVFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAA 419

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVI 348
           RG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +
Sbjct: 420 RGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFL 463


>gi|255564739|ref|XP_002523364.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537452|gb|EEF39080.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 751

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/395 (32%), Positives = 199/395 (50%), Gaps = 29/395 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++         
Sbjct: 296 KGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPAIEVVVKSPPTGRDQ 355

Query: 73  SAP--LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
             P  L + I PTRELA Q   E   L      V V V IGG  +  E++ +Q N   I+
Sbjct: 356 KRPPILVVVICPTRELASQAAAEANTLLKYHPSVGVQVVIGGTRLALEQKKMQANPCQIL 415

Query: 129 VGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL DHI    G    +  +K ++LDEAD +LD+GFR DIE I+ + PK+R+ L+F
Sbjct: 416 VATPGRLQDHIENTAGFATRLMGVKVLILDEADHLLDMGFRKDIERIIAAVPKQRQTLLF 475

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL-RYH 242
           SAT+   +  +     ++D   +N   E    +    R + LVA  D+   ++ +L + H
Sbjct: 476 SATVPEEVRQICHIALRRDHEFINTVPEGTDETHTQVRQMHLVAPLDKHFPLLYVLLKDH 535

Query: 243 GAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            A N     ++FC+T         +L E    V  +     Q  R+      R  +  + 
Sbjct: 536 IADNIDYKVLLFCTTAMVTRMVANLLGELKLNVREIHSRKPQSYRTRVSDEFRKSKGLIL 595

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G++G+ + ++          
Sbjct: 596 VTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKEGVGILLLAP-------- 647

Query: 359 LFREANVSVVWE------PAPSVEAIRERDAQRIL 387
            + E+ +S + +      P PSV+   ++  +R L
Sbjct: 648 -WEESFLSTIKDLPISKAPVPSVDPDTKKKVERSL 681


>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 475

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 189/348 (54%), Gaps = 7/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+   I  ++ + G+   + +Q   L   L  +D++  AQTG+GKT AF + +   LL  
Sbjct: 104 NLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQKLLTV 163

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF  AS P AL +APTRELA+Q+ ++ + L     + +   +GGV   +++  L+N
Sbjct: 164 KPEERF--ASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQLEN 221

Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--R 180
               +VV TPGRL D+++   + +  ++ +V+DEAD MLD+GF  D++ I+  +P+K  R
Sbjct: 222 EVVDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKSIR 281

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT    +  L++++     +V I  E+     +  + + +  + +DNA++  L 
Sbjct: 282 QTQLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIEYLE 341

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+F + R +       L +   + + LSGE++Q +R   L   +     V +A
Sbjct: 342 KENTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGAVLVA 401

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVA RGI +  +  V +  L  +PE+ +HR GRTGRAG  G ++  I
Sbjct: 402 TDVAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFI 449


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 191/367 (52%), Gaps = 12/367 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 68  FPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDLQ G 
Sbjct: 127 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLQRGV 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 186 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++V I S +    H       V+     RD  I  + +   
Sbjct: 246 SATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMIKELEKIME 305

Query: 244 AKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            K A    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 306 DKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 365

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  VI+ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 366 ATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITYFTTDNAKQARDL 425

Query: 360 ---FREA 363
               REA
Sbjct: 426 VGVLREA 432


>gi|152999859|ref|YP_001365540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364477|gb|ABS07477.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 472

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 20/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +   L AE+    
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVLEKLAAESLTSD 71

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 72  SNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +      + + ++FSAT
Sbjct: 132 VATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPQHQTMLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  LA+    +   VN+A +    S +      V    +   +  ++  +  +  +
Sbjct: 192 YSDAVKQLAEKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRNNWRQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  +  + RV +A
Sbjct: 251 VFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLRVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 303 TDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEMLAE 360


>gi|30682500|ref|NP_196478.2| DEAD box RNA helicase (RH26) [Arabidopsis thaliana]
 gi|109893654|sp|Q9FNM7|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26
 gi|332003946|gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]
          Length = 850

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 190/354 (53%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALASTLLAENDR 68
           +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L    A+  +  A  D 
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGAH 126
             P    + L + PTRELA Q   E   L      + V V IGG  +  E+R +Q N   
Sbjct: 455 RQPPI--IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQ 512

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+  
Sbjct: 513 ILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTF 572

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL- 239
           +FSAT+   +  +     ++D   +N   E     H  +    ++ +L DR  +++++L 
Sbjct: 573 LFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASL-DRHFSLLHVLL 631

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           + H A N     I+FC+T A V+R    L   L   V  +     Q  R+      R  +
Sbjct: 632 KEHIADNVDYKVIIFCTT-AMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSK 690

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 691 AIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 744


>gi|46143736|ref|ZP_00134588.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307256578|ref|ZP_07538359.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864988|gb|EFM96890.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 406

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 183/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A+   LL  ND  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIAVFHYLLT-NDSVTNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+S 
Sbjct: 141 RVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSA 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 RVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 354


>gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 423

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 181/340 (53%), Gaps = 5/340 (1%)

Query: 19  GYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           G+ + T +Q   + P +R+  D+L +AQTG+GKT AF L +   ++ E   +     P  
Sbjct: 22  GFTSPTPIQMKAI-PLVRQGYDLLAAAQTGTGKTAAFVLPMLQKIIEEPTLYQ-KRVPRV 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA QVG  +  L    GV  AV  GGV ++ ++  +  G   +V TPGRL D
Sbjct: 80  LVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAKGLDFLVATPGRLLD 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +     ++S    ++LDEAD MLD+GF  D++ IL + P  R+ L+FSAT SP I  LA
Sbjct: 140 LMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQTLLFSATFSPEIKKLA 199

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             +      V I   N+  S +      V  +D+   + +++  +     +VF  T+   
Sbjct: 200 SEFLNKPESVEI-ERNKDSSLVRQTLYRVPKADKHTVLRDLIVDNQWDQVLVFTRTKYGA 258

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +  + L +      A+ G+ SQ  R+ AL+  ++ +  + +ATD+AARG+D+  L  V+
Sbjct: 259 DKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILVATDIAARGLDIEKLPQVV 318

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           + EL    E+ +HR GRTGRAG  G +   V P+ + + A
Sbjct: 319 NYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQFA 358


>gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665868|emb|CAZ36554.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 793

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 191/371 (51%), Gaps = 28/371 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L + +  L
Sbjct: 369 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 428

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 429 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 488

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL   P     
Sbjct: 489 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 548

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 549 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 608

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL        I+F + +       K L +  +  V L G 
Sbjct: 609 RVEQIVYMVSEQEKRRKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGYSAVVLHGG 668

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 669 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 728

Query: 338 AGRKGMSVFVI 348
           AG+ G+++ ++
Sbjct: 729 AGKSGIAISLL 739


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 191/370 (51%), Gaps = 33/370 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   L  +D++  AQTGSGKT AF + + + +L +    +PAS      
Sbjct: 287 YDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPILNRMLEQGASMNPASNRPYQR 346

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 347 RKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 406

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK-KRRMLMFS 186
           TPGRL D I    + + +L+ +VLDEAD MLD+GF   I  I+   D  P  +R+ LMFS
Sbjct: 407 TPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQIRHIIENRDMPPTGQRQTLMFS 466

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR------ 240
           AT    I  LA ++  + + + +        +I    + V  +++ + ++++L       
Sbjct: 467 ATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNENEKRSYLLDLLSRLREGS 526

Query: 241 --YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L ++   V ++ G+ SQ+ER +AL+  R G   + 
Sbjct: 527 PDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREDALKCFRSGDCPIL 586

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G+            A  
Sbjct: 587 VATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTGRMGNLGI------------ATS 634

Query: 359 LFREANVSVV 368
            F E N ++V
Sbjct: 635 FFNEKNRNIV 644


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 189/357 (52%), Gaps = 8/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 117 FPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHINHQ 175

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R +    P+AL +APTRELA Q+ +++   +  +  V   CI GG     + RDL+ G 
Sbjct: 176 PRLNRNDGPIALILAPTRELAQQI-QQVASDFGISSQVRNTCIFGGAPKGPQARDLERGV 234

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 235 EICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMW 294

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+ +  D +++NI S +   + +I     +    +++  ++ +L     
Sbjct: 295 SATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLEEISN 354

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ + +AT
Sbjct: 355 EPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAILVAT 414

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  + ++
Sbjct: 415 DVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKASD 471


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 183/343 (53%), Gaps = 19/343 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + +R Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 16  VQDRNYQIPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + L + PTRELA QV         G +L++L A          GGVS++ +   L+ G 
Sbjct: 76  RV-LVLVPTRELAEQVLQSFIDYGKGLDLQFLAA---------YGGVSINPQMMKLRKGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+F
Sbjct: 126 DVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPARRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  I  +A N  +  V ++++  N   S I    V V   ++ +  ++++  +  +
Sbjct: 186 SATFTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPVDKKNKPDLFMHLVAENSWE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  TR  V     +L E  + V  + G+  Q  R  AL+  +     + +ATDVAA
Sbjct: 246 HALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHMLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 188/344 (54%), Gaps = 15/344 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAEND 67
           ++L   G    T +Q   +   L  KD++ S++TGSGKT+AF L      ++S  L++ D
Sbjct: 14  QSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQRVISSKALSKKD 73

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P  L + PTRELA QV  +L  L A T       +GG + + + + L    H 
Sbjct: 74  -------PRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKALAREPHF 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFS 186
           +V TPGR+ DH++ + L ++ L+ +VLDEAD MLDLGF   ++ I  ++  +RR  LMFS
Sbjct: 127 IVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRRQTLMFS 186

Query: 187 ATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGA 244
           AT+    +  LA    K+   V I + +  H DI+ + +L   L  ++  +  +L  +  
Sbjct: 187 ATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEALLERLLSGNNF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +TR    R   +LAE  +   ALSGEL Q +R+  +        R+ + TDVA
Sbjct: 247 RQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVTTDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +RG+D+ ++ LV++ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 307 SRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLV 350


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 175/333 (52%), Gaps = 11/333 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y N T +Q   +   L  +D+L  A+TGSGKT AF + +    LA+         PLAL 
Sbjct: 149 YTNPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMIQHCLAQPP-IRHGDGPLALV 207

Query: 80  IAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +APTRELA Q+ +E+      T G   A+ +GG  +  +R +L++G  +VV TPGR  DH
Sbjct: 208 LAPTRELAQQIEKEVRAFSRSTDGFKTAIVVGGTHIGEQRSELRSGVQVVVATPGRFIDH 267

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++    ++  +  VVLDEAD MLD+GF   I+ ++ + PKK + L+FSAT+   I  LA+
Sbjct: 268 LQQGNSSLLRVSYVVLDEADRMLDMGFLPQIKEVMQNLPKKHQTLLFSATMPEEIEALAQ 327

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249
            Y    V+V +   +   S++      V   D+ + ++ +L     ++          IV
Sbjct: 328 EYLTKPVQVKVGKVSSPTSNVLQSLEKVDEKDKIDYLLAMLVESSNQSERAGQPPPLTIV 387

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +A        L     +  AL G  +Q ER  AL+  R G   + +ATDVA+RG+D
Sbjct: 388 FVERKARCDDVADALLAQGLKAAALHGGRTQGEREAALRDFRKGAISILVATDVASRGLD 447

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  V++ +L    E+ +HR GRTGRAG  G
Sbjct: 448 VTGVAHVVNLDLPKVMEDYVHRIGRTGRAGASG 480


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 185/343 (53%), Gaps = 14/343 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+ E  +   T +QE I+   LR + V+  +QTG+GKT A+ L +   +  +++   
Sbjct: 15  IIEAIKELRFYKPTEIQERIIPSILRGESVIGQSQTGTGKTHAYLLPIIEKIDPDHE--- 71

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              A  A+  APTRELA Q+  E+    ++  +   +     IGG    +    L+   H
Sbjct: 72  ---AVQAVITAPTRELATQIYHEILKIIKFCPSDRQITARCFIGGTDKQKAIEKLKTQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D IR + LN+     +V+DEAD MLD+GF  D++ I    PK+ +ML+FS
Sbjct: 129 IVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGFIVDVDQIAARMPKELQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           ATI   +    K Y ++   V++A +      I++  VLV L  RD A  +  +L  +  
Sbjct: 189 ATIPEKLKPFLKKYMENPKYVHVAPKQVTAEKIEH--VLVPLRSRDKAKLLHEMLVAYNP 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +T+         L E   +V  L G+L+ +ER   ++ +RD   +  +ATD+A
Sbjct: 247 YLAIVFTNTKKMADEVADRLIEKGMKVGILHGDLTPRERKKMMRQIRDLEFQYIVATDLA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARGID+  +  VI+ EL  + +  +HR GRT RAG  G++  +
Sbjct: 307 ARGIDIEGVSHVINYELPKDLQFYIHRVGRTARAGYTGIATTI 349


>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
 gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
          Length = 754

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 187/345 (54%), Gaps = 3/345 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+S  G+   T +Q + +   L  KD++ +A TGSGKT AF + +   LL  
Sbjct: 180 NLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLERLLY- 238

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ     + L A T +   + +GG+S+  +   L+   
Sbjct: 239 REKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAALRQRP 298

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH+R   G N+  L  +VLDEAD ML  GF D++  I+ + PK R+ ++
Sbjct: 299 DVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSRQTML 358

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           FSAT++ ++  L K      VR+ +  +      +    V +   SDR   +V + +   
Sbjct: 359 FSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKESDRPAMLVALCKQTY 418

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  ++    +   V +    +   L G+LSQ++R  ALQ  R+G     +ATD+
Sbjct: 419 KHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDYLMATDL 478

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+RG+D+  +E V++ ++       LHR GRT RAGRKG SV ++
Sbjct: 479 ASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLV 523


>gi|255030366|ref|ZP_05302317.1| hypothetical protein LmonL_17026 [Listeria monocytogenes LO28]
          Length = 410

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 106/279 (37%), Positives = 159/279 (56%), Gaps = 7/279 (2%)

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + P AL I PTRELA+QV  E   +     V  A   G     +++ +L    HIVVGTP
Sbjct: 6   NKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVGTP 65

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FSAT+   
Sbjct: 66  GRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMPEE 125

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L K YQ + + + +ASE  + + I +  V +   +++  + ++L      +AI+FC+
Sbjct: 126 MQDLIKRYQDNPMVIEMASE--KTNPIFH--VEMQTDNKEKTLKDVLITENPDSAIIFCN 181

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA RGID+ +
Sbjct: 182 TKNQVDELTDLLD---VKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDN 238

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + LVI+ +L    EN +HR GRTGRAG+ G ++  +  N
Sbjct: 239 VSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTN 277


>gi|296117857|ref|ZP_06836440.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969088|gb|EFG82330.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 450

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 179/357 (50%), Gaps = 8/357 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ I   L+++G  +   +QEA +   L  KD+L    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPRPIVSVLAQQGITSPFPIQEAAIPDALAGKDILGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L +APTRELA+Q+ + L+      G+ V   +GGV+++   
Sbjct: 61  IARLAGSG--ASKPGRPRGLVLAPTRELAIQIQQRLDEPANAMGLRVLSVVGGVNINNHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     I+V TPGR  D +  K L++S      LDEAD+M D+GF   ++ +L  +P 
Sbjct: 119 RQLARPVDILVATPGRAQDLVNQKKLSLSDATLTALDEADQMADMGFLPQVKKLLALTPD 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
             + L+FSAT+   +  L   +  D V  + A        + +    V    DR+  ++ 
Sbjct: 179 NAQRLLFSATLDGDVNKLVSRFMHDPVTHSTAPVQASVDTMKHYVFFVGEREDRNKVVLR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I    G    I+F  T+  V R  K L       + L G+  Q  RS  LQ   DG   V
Sbjct: 239 IAAREG--KTIMFMRTKHGVDRQAKKLRRAGIPAMGLHGDKGQNTRSTTLQGFADGSVSV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G SV  +  N QR
Sbjct: 297 LVATDIAARGIDVHDVSLVVHVDPPAEHKAYLHRAGRTARAGEAG-SVVTLVMNEQR 352


>gi|68536703|ref|YP_251408.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264302|emb|CAI37790.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 453

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 185/359 (51%), Gaps = 22/359 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+     +  ++QE  L   L+  DV+  A+TG GKT+ FG+ +   +  +    +
Sbjct: 28  ITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLDRVFDDATVTA 87

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLY-----------------AKT-GVVVAVCIGGV 112
           P   P AL + PTREL +QV  +L                     +KT  + V    GGV
Sbjct: 88  PDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRALQVHAVYGGV 147

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S  ++   L  G  +VVGTPGRL D  +   L ++ ++ VVLDEADEMLD GF DD+  I
Sbjct: 148 SFDKQTTALARGVDVVVGTPGRLLDLAQQGYLQLNTVEIVVLDEADEMLDQGFLDDVRSI 207

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALS 229
           +  +  +R+ ++FSAT+   I  L + + +  V +   N A+E   H             
Sbjct: 208 ITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADNAATEA-THESTKQVVFQSHKL 266

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           DR +A+  IL+  G    IVF  T+   +   + LA+  F+V A+ G++ Q +R  +L  
Sbjct: 267 DRLSALARILQSPGRGRCIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLDE 326

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            R     V +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG  G +V +I
Sbjct: 327 FRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLI 385


>gi|300771829|ref|ZP_07081700.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761215|gb|EFK58040.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 406

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 172/325 (52%), Gaps = 9/325 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E L   GY++ T +QE  +   L++KD++  AQTG+GKT ++ L +   +       
Sbjct: 11  LLEEGLDSMGYLDATPIQEQAIPVILQDKDLIACAQTGTGKTASYLLPILHKIEVRKSEH 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAH 126
                   L +APTRELA+Q+ +++  L   TG       GG   +   +++R ++ G +
Sbjct: 71  VNT-----LILAPTRELALQIDQQIMGLAYFTGATSIAVYGGGDGIGYEQQKRAIREGVN 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL  H+     + S L+ ++LDEAD MLD+GF +DI  I+   P KR+ L+FS
Sbjct: 126 IIVATPGRLIAHMTSGKFDFSKLEHLILDEADRMLDMGFYEDILRIISYLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I +LAK    D   +NIA  ++    I  +A LV    +   I  IL      +
Sbjct: 186 ATMPPKIRSLAKQILHDPTEINIAI-SKPSDGIKQQAYLVYDEQKTELIKTILSDDSYSS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F S +  V R T  L +      A   +L Q +R   +   +  R  V + TDV +R
Sbjct: 245 VIIFASKKEIVKRLTHELQKKGIAAEAFHSDLEQTQREEVMNKFKGKRLSVLVGTDVISR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHR 331
           GID+  + LVI+ ++  +PE+ +HR
Sbjct: 305 GIDVVGISLVINYDVPPDPEDYVHR 329


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 187/341 (54%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL ++ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLL-DSG 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +      AL +APTRELA Q+   ++     T + V    GG  +  +   L+NG  I
Sbjct: 68  RTASRKTARALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISALENGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    +++++L+ +V DEAD +LD+GF   +  I+   D+ P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|9759355|dbj|BAB10010.1| RNA helicase-like protein [Arabidopsis thaliana]
          Length = 827

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/354 (36%), Positives = 190/354 (53%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALASTLLAENDR 68
           +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L    A+  +  A  D 
Sbjct: 372 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 431

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGAH 126
             P    + L + PTRELA Q   E   L      + V V IGG  +  E+R +Q N   
Sbjct: 432 RQPPI--IVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQ 489

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR DIE I+ + PK+R+  
Sbjct: 490 ILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTF 549

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL- 239
           +FSAT+   +  +     ++D   +N   E     H  +    ++ +L DR  +++++L 
Sbjct: 550 LFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASL-DRHFSLLHVLL 608

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           + H A N     I+FC+T A V+R    L   L   V  +     Q  R+      R  +
Sbjct: 609 KEHIADNVDYKVIIFCTT-AMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSK 667

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 668 AIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 721


>gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
 gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
          Length = 438

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILDEPVELEADPSRRERKKIQQWYYRAD--NIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 182/347 (52%), Gaps = 8/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++   L++  Y   T +Q   +   L   D++  A TGSGKT  F L +   +  E 
Sbjct: 16  IPELLAR-LTDLEYTQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPILQKMFLEQ 74

Query: 67  DRFSPASAP---LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDL 121
              S AS       L + PTRELA QV   ++   A   G +  + + GGVSV+ + + L
Sbjct: 75  GSKSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  L  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +  L ++   D V + + S++   S +  R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVKLLTQDLLNDPVEIQVQSKD--ESTLVQRVFSVNKGEKTTVLAHLIKT 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  + A++F + +       + L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ ++
Sbjct: 313 DIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLV 359


>gi|298208537|ref|YP_003716716.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848460|gb|EAP86329.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 186/345 (53%), Gaps = 8/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL E G V+ T +QE      +  +DV+  AQTG+GKT A+ L +   L   
Sbjct: 9   NLSPSLQKALDELGIVHPTPIQEESFPVIMSGRDVVGIAQTGTGKTYAYALPVLRLL--- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P AL I PTREL VQV  E+E L     + +    GG +++ +++ +  G 
Sbjct: 66  --PYSRQVNPRALIIVPTRELVVQVVSEIEKLCTLNDMRILGVYGGTNINTQKKAVVEGC 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D      L + +++ +V+DE D MLDLGFR  +  ILD  PKK + ++F
Sbjct: 124 DVLVATPGRLYDLAVSHVLQLKNIQKLVIDEVDVMLDLGFRFQLVNILDILPKKHQNILF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILR-YHG 243
           SAT++  ++++   +  + +++++A       +I  YR  +     + N I+++L     
Sbjct: 184 SATMTDEVSSMISEFFNNPIKISVAKSGTPLVNIQQYRYNVPNYYTKQNLIIHLLEDVET 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +  ++F   +    R   V+ +    Q   +    +Q  R N+++    G  R+ IATD
Sbjct: 244 YEKTLIFVPNKRIADRLFAVVDKTFPDQASVIHSNKTQNYRLNSIEAFETGEHRIMIATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           V ARG+D+ D+  VI+ +  S PEN LHR GRTGRA +KG ++ +
Sbjct: 304 VMARGLDIDDISHVINMDTPSYPENYLHRIGRTGRAEKKGTALVL 348


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/360 (35%), Positives = 191/360 (53%), Gaps = 24/360 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAEN 66
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L     LA+ +L  +
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVLEKLAAEILVND 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P     AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  
Sbjct: 72  DNDKPILR--ALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQRKGVEQGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +        + ++FS
Sbjct: 130 ILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPVHQTMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S A+  LA+    +   VN+A +    S +      V    +   +  ++  +  + 
Sbjct: 190 ATYSDAVKQLAQKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRNNWRQ 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVC 298
            +VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  + G+ RV 
Sbjct: 249 VLVFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLRVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 301 VATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDEMLAE 360


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 185/354 (52%), Gaps = 7/354 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P+V+ +   + GY   T++Q+      L  +D++  AQTGSGKTVAF L  
Sbjct: 173 IRTFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPA 232

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L + PTRELA+QV  E        G++     GGV  + + 
Sbjct: 233 IIHVNAQAP-LKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQA 291

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 292 NDLRRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIRP 351

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIV 236
            R+  M+SAT    + ++A+++ +++ +R+ + +   Q + D+  R  +V+  D+     
Sbjct: 352 DRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFF 411

Query: 237 NILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + L+  Y      IVF  T+      T+ +  + F   ++ G+  Q+ER   L   + GR
Sbjct: 412 DWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGR 471

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVA RG+D+ ++E V++ ++    E+ +HR GRTGRAG  G S+  I
Sbjct: 472 CNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFI 525


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 187/344 (54%), Gaps = 3/344 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT +F L +   +L +  +  
Sbjct: 12  IVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPILQ-MLDDGIKVR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL +APTRELAVQV   ++       +      GGV    ++R L  G  I+V 
Sbjct: 71  PKRV-RALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRLIEGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FSAT+S
Sbjct: 130 TPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK   ++ + +++A        ID   V V    + + + ++++    + A++F
Sbjct: 190 DQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTVDKDMKSSLLSHLIQEQQWEQALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +   +  +     SQ  RS  L+  ++G+ +  IAT VA+RGID+
Sbjct: 250 IETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYLIATGVASRGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             L  V++ +L   PE  +HR GRTGRAG  G ++ FV   N +
Sbjct: 310 EQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSKDNFK 353


>gi|256785835|ref|ZP_05524266.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 473

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 51  DMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ G 
Sbjct: 108 AGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGGV 167

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 168 EVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML- 226

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 227 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHGADKHAATTEIAARDG- 285

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  TR +V R T+ L     +  AL G  SQ +R+  L   ++G   V +AT+VA
Sbjct: 286 -RVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVATNVA 344

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  S+ ++ LHR GRT RAG  G  V  +  N +R   RL   A 
Sbjct: 345 ARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPVTPNQRRAMTRLMTTAG 404

Query: 365 VSVVWEP 371
           +     P
Sbjct: 405 IVPQTTP 411


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 179/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +A    +      +S  +A   L
Sbjct: 50  GFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKI-----DYS-LNACQVL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ +    L     +    C+GG SV  +   L++G H+VVGTPGR+ D 
Sbjct: 104 LLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L + +LK  +LDEADEML  GF+  I  I    P+  ++ +FSAT+   I  L  
Sbjct: 164 LDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTT 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D  R+ +  E      I    V V   + + + ++++        AI++C+TR  V
Sbjct: 224 QFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIVQAIIYCNTRRRV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + TK + E  F   ++ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  +PE  +HR GR+GR G+KG+S+
Sbjct: 344 NYDLPVSPETYIHRIGRSGRFGKKGVSI 371


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 183/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL ++G+ N T +Q   L   ++  D+   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPA 76

Query: 68  RF-SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +     + P AL +APTRELAVQ+  + + L   TGV + +  GG     + + L NG  
Sbjct: 77  KEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           IV+GT GRL D+++   +N++ ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 IVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPNAAERMNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +   V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 ERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNIDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 317 ARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSI 357


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 200/376 (53%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E + P  + + +++ G+   T +Q       L  KD++  AQTGSGKT+++ L  A
Sbjct: 94  MKFHEASFPTYVMDVINKAGWSEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSY-LLPA 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + +VC+ GG     + 
Sbjct: 153 IVHINHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYGRASRLKSVCVYGGAPKGPQL 211

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 212 RDLDRGVEICIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD V++N+ + +   + +I     +    ++++ ++ 
Sbjct: 272 DRQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLR 331

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +L           I+F  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 332 LLEEIMSEKENKTIIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGK 391

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +  F  P NM+
Sbjct: 392 APILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMR 451

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 452 QASDLVAVLREANQAI 467


>gi|160874482|ref|YP_001553798.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304409447|ref|ZP_07391067.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303805|ref|ZP_07583558.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160860004|gb|ABX48538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304351965|gb|EFM16363.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912703|gb|EFN43126.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315266720|gb|ADT93573.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 472

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 20/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +   L AE+    
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVLEKLAAESLTSD 71

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 72  SNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +      + + ++FSAT
Sbjct: 132 VATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPQHQTMLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  LA+    +   VN+A +    S +      V    +   +  ++  +  +  +
Sbjct: 192 YSDAVKQLAEKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRNNWRQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  +  + RV +A
Sbjct: 251 VFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLRVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 303 TDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEMLAE 360


>gi|84468270|dbj|BAE71218.1| putative DEAD-box protein abstrakt [Trifolium pratense]
          Length = 588

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 178/352 (50%), Gaps = 9/352 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L +    + E  
Sbjct: 151 PDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEI 210

Query: 68  RFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRERR 119
                P   P  L I P+RELA Q    +E             +   +CIGG+ +  +  
Sbjct: 211 MMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGIDMRSQLE 270

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    +
Sbjct: 271 IVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ 330

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     + VN+      + D+      V    +   ++  L
Sbjct: 331 RQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL 390

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V +
Sbjct: 391 Q-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 449

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 450 ATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 501


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 194/392 (49%), Gaps = 22/392 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L S++L+ 
Sbjct: 137 NTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSN 196

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               +      S+P AL +APTREL++Q+  E      +TG+   V  GG     +  +L
Sbjct: 197 ATPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHEL 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
             G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+        
Sbjct: 257 SRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMP 316

Query: 177 -PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ L++SAT    I  LA+ +      + +        +I      V  +D+   +
Sbjct: 317 PPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHL 376

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +L  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+M +    
Sbjct: 377 LRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASC 436

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G            R
Sbjct: 437 QVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVG------------R 484

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           A   F E N ++V +  P +    +   Q+I+
Sbjct: 485 AISFFNEKNRNIVDDLVPLLNETHQNVLQQIM 516


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 187/341 (54%), Gaps = 8/341 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL E+ 
Sbjct: 10  PEVV-KALAECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMIQQLL-ESS 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R        AL +APTRELA Q+   ++     T + VA   GG  +  +   L++G  I
Sbjct: 68  RSVSRKTARALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISALESGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLM 184
           +V TPGRL +HI    ++++++  +V DEAD +LD+GF   +  I+   D++P+   ++M
Sbjct: 128 LVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNPQ---IMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+      R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAV 345


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPA 72
           L+E  Y   T +Q  ++   L E+D++  A TGSGKT AF L L   +   A  DR S  
Sbjct: 23  LTELEYQQPTPIQAQVIPSVLAERDLIAGANTGSGKTAAFALPLLQKIHEDAPLDRRSGK 82

Query: 73  SAPLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              ++ L + PTRELA QV   ++ +     G +  VC+ GGVSV+ + + L+ G  I+V
Sbjct: 83  GNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL      D + V + S N   S +  R   V    +   + ++++ H  + A++
Sbjct: 203 PEQVKTLTHELLNDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQHEWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + S       L +         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 261 FVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 359


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 197/352 (55%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL
Sbjct: 14  FDLHPALVA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++
Sbjct: 73  -----IRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 128 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRM 187

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   
Sbjct: 188 PERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTL 247

Query: 235 IVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ +L R  GA+  +VF +T+A V R  + L  + ++V  LSG++ Q++R + L   + G
Sbjct: 248 LLGLLSRSEGART-MVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQKG 306

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 307 QLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|217974178|ref|YP_002358929.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499313|gb|ACK47506.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 472

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 20/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +   L AE+    
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPVLEKLAAESLTSD 71

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 72  SNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 131

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +      + + ++FSAT
Sbjct: 132 VATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPQHQTMLFSAT 191

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  LA+    +   VN+A +    S +      V    +   +  ++  +  +  +
Sbjct: 192 YSDAVKQLAEKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRNNWRQVL 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  +  + RV +A
Sbjct: 251 VFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLRVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 303 TDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEMLAE 360


>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351656|sp|Q09903|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
 gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 754

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 187/346 (54%), Gaps = 11/346 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I + LS  G+   T +Q+  +   L  KD++ +A TGSGKT AF + +   LL  
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLL-- 322

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P   P    L + PTRELA+Q       + + T ++V +CIGG+S+  + ++L+ 
Sbjct: 323 ---YRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IV+ TPGR  DH+R  +G  + +++ +V+DEAD ML+ GF D++  I+ + PK R+ 
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNIL 239
           ++FSAT++  +  L +      VRV + ++      +    V V       R   ++ + 
Sbjct: 440 MLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLC 499

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  I+F  ++A   +   +          + G LSQ++R  AL+  RDG+    +
Sbjct: 500 KELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLL 559

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA+RGID+  +E+VI+ E  +  E  LHR GRT RAGR G ++
Sbjct: 560 ATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAI 605


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 188/347 (54%), Gaps = 13/347 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AENDR 68
           A+S+ G+  LT +Q  IL   L  +D +  AQTG+GKT  F L +   LL     A+ +R
Sbjct: 19  AVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTIMEALLKRPFAADEER 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
                 P A+ +APTRELA Q+  +   L   T +     +GG +   ++ +L+     I
Sbjct: 79  H--LGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYETQQHELERQYVDI 136

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMF 185
           ++ TPGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ ++   P    R+ L+F
Sbjct: 137 LIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVGRMPPNTDRQSLLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  +  LA  +  +   V I  E++    +D    L+    +  A+  I+     +
Sbjct: 197 SATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQKLEAVERIITDSTVE 256

Query: 246 NAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             I+F + +  V R + K+   H  ++V LSG++ QQ+R   LQ  +DG A V +ATDVA
Sbjct: 257 KVIIFANRKDQVKRLYHKLRQGH--KIVMLSGDVIQQKREKYLQRFKDGHASVLVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            RGI + D+  VI+  L   P++ +HR GRTGRAG+ G+S+  + ++
Sbjct: 315 GRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSED 361


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 175/342 (51%), Gaps = 6/342 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E +    Y   T VQ+  +      +D++  AQTGSGKT AF + + S +     + 
Sbjct: 207 IITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLSNIFHNPGKI 266

Query: 70  ----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  + PLAL ++PTREL  Q+ +E      ++ V   V  GG  V  + RDL  G 
Sbjct: 267 PRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDLSRGC 326

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRML 183
           H++V TPGRL D +    + +   + + LDEAD MLD+GF   I  I++    P  R+ L
Sbjct: 327 HLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPSDRQTL 386

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA ++ ++ + + +       ++I  R   V  +++   +  +L    
Sbjct: 387 MFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLENGQ 446

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+         L E  +Q   + G+ +QQER  A+ + + G+  + +AT V
Sbjct: 447 EMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVATAV 506

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P++  VI+ +L S  +  +HR GRTGRAG  G + 
Sbjct: 507 AARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWAT 548


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 197/354 (55%), Gaps = 12/354 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + L   +  + +   
Sbjct: 14  ILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIPLCENINVDYNNIQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  E+  +     V  +   G  S+  +  +L+   HIVV 
Sbjct: 74  ------ALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQIAELKQRVHIVVA 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + PK++ + +FSATI 
Sbjct: 128 TPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLPKEKIVSLFSATID 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAK 245
             I  + + Y  D   +NI  EN   ++   R +   ++  + R+  I+   ++     K
Sbjct: 188 EEIKYICEKYMLDYSVINI-EENESDTNQKTRQIDDKIIKANGREKYILLKELIYSENPK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ +  + +++DVA+
Sbjct: 247 SVVIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQKFNILVSSDVAS 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  ++  E +
Sbjct: 307 RGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDEKYIENI 360


>gi|108763762|ref|YP_633382.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
 gi|108467642|gb|ABF92827.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
          Length = 423

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 194/381 (50%), Gaps = 7/381 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++  GY   T VQ A +   LR  DV  SA+TGSGKT AF L +   L A   R   + 
Sbjct: 15  AVAGLGYDEPTPVQRATIPVVLRGGDVWASAKTGSGKTAAFLLPILEALRA---RPGGSV 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            P+ A  + PTRELA Q+   ++    + K  +   + +GGVS + +   L+ GA IVV 
Sbjct: 72  RPVRAFILVPTRELAAQIVDSIQRYGQHLKKPLKTCLAVGGVSANPQMLALRGGADIVVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D +    L +  ++ +VLDEAD +  LGF D++  +L   P +R+ L+FSAT  
Sbjct: 132 TPGRALDLVHQNALRLDQVETLVLDEADRLFSLGFADELNSLLALLPTRRQNLLFSATFP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           PA+   A+    +  R+++       ++ I  RA+ V +  R   + ++L  H   + + 
Sbjct: 192 PAVRKFAEQLLHEPTRIDVDDGELPSTEFILQRALQVDVPRRTMLLRHLLETHAWSHVLT 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ++R +       L        +L GELSQ  R+ AL   +  R RV +ATDVAARG+D
Sbjct: 252 FVASRYTADHVALKLNRAGIVATSLHGELSQGARTRALADFKAKRVRVLVATDVAARGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  V++ +L  +  + +HR GRTGRAG KG+++  +    +     + +   + +  
Sbjct: 312 IAQLPAVVNYDLPRSTADYVHRIGRTGRAGDKGVAISFVSAGTEAHFRLIEKRHQLDLPR 371

Query: 370 EPAPSVEAIRERDAQRILQDP 390
           E  P  E   E       +DP
Sbjct: 372 EQVPGFEPTEEVSTTTPPRDP 392


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 182/343 (53%), Gaps = 12/343 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +A A  L+  N      +    L
Sbjct: 58  GFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIA-ALQLIDYN-----INNCQVL 111

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 112 ILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAGVHMVVGTPGRVHDM 171

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L +  +K  ++DEADEML  GF+  I  +    P   ++ +FSAT+   I  L  
Sbjct: 172 MEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFSATMPQDILELTT 231

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D  R+ + ++      I  R   VA+   D     + ++        AI++C+TR 
Sbjct: 232 KFMRDPKRILVKNDELTLEGI--RQFYVAVEKEDWKLETLCDLYETLTITQAIIYCNTRR 289

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  ++E  F V ++ G++ Q+ R   ++  R G  RV I TD+ ARGID+  + L
Sbjct: 290 KVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQVSL 349

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           VI+ +L +  EN +HR GR+GR GRKG+++ FV   ++++  E
Sbjct: 350 VINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKE 392


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 188/363 (51%), Gaps = 15/363 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           +   T VQ+  +    + +D++  AQTGSGKT  F   + S   +     +P  +     
Sbjct: 166 FTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMR 225

Query: 75  ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTRELA Q+  E +    ++ V   V  GG  + ++ R+L+ G  ++V T
Sbjct: 226 KAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVAT 285

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSA 187
           PGRL D +    +++  +K +VLDEAD MLD+GF   I  I++     + + R+ LMFSA
Sbjct: 286 PGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSA 345

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA ++ KD + +++        +I  + + V   D+ + ++++L        
Sbjct: 346 TFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLT 405

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+      T  L        A+ G+ +Q ER  AL   R GRA V +AT VAARG
Sbjct: 406 LVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVATAVAARG 465

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREAN 364
           +D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        +N+ +    +  EAN
Sbjct: 466 LDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVDILEEAN 525

Query: 365 VSV 367
             V
Sbjct: 526 QEV 528


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 196/349 (56%), Gaps = 11/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P +I   L   G+   T +Q   L   L   DV   AQTG+GKT+AF + + + LL
Sbjct: 14  FDLHPALIA-GLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVVNRLL 72

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              A  DR  P   P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  
Sbjct: 73  NRPALADR-KPED-PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130

Query: 121 LQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++
Sbjct: 131 LLQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER 190

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ 
Sbjct: 191 GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLG 250

Query: 238 IL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  
Sbjct: 251 LLSRSEGART-MVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|289613420|emb|CBI59610.1| unnamed protein product [Sordaria macrospora]
          Length = 580

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 193/361 (53%), Gaps = 29/361 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSP---ASA 74
            Y   T +Q A     L  +DV+  A+TGSGKT+AF L    +L +    +F+     + 
Sbjct: 164 AYTTPTPIQAASWPFSLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAH 223

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QNGAHIVVGT 131
           P A+ ++PTRELA+Q    L  L +  G+  AVCI G S   E+R+L    NG  I+  T
Sbjct: 224 PRAVIVSPTRELAMQTHAALSGLASLVGLS-AVCIFGGSDKNEQRNLLYKNNGVDIITAT 282

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATI 189
           PGRL D +    ++++++   VLDEAD MLD GF +DI+ IL   P  +KR+ LMF+AT 
Sbjct: 283 PGRLKDFLSEGSISLANVSFAVLDEADRMLDRGFSEDIKMILSECPPREKRQTLMFTATW 342

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSD--------------IDYRAVLVALSDRDNAI 235
              I  LA++Y  +  +V I    R   D              I+ +  +V    ++  +
Sbjct: 343 PLDIQKLAESYMINPAQVTIGHRTRAGGDGEGNGNIELQANSRIEQKVEVVDPRGKEFRL 402

Query: 236 VNILR--YHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             IL+    G++     +VFC  +    R  + L     +V ++ G+L Q +R+ +L+  
Sbjct: 403 YEILKEAQKGSQKDDRILVFCLYKKEAVRVEQFLTRKGMKVASIHGDLRQDQRTRSLEAF 462

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   V +ATDVAARG+D+P+++LV++       E+ +HR GRTGRAG+ G ++ +  +
Sbjct: 463 KSGSTSVLVATDVAARGLDIPEVKLVVNVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTE 522

Query: 351 N 351
           +
Sbjct: 523 H 523


>gi|71896415|ref|NP_001026109.1| probable ATP-dependent RNA helicase DDX49 [Gallus gallus]
 gi|53130312|emb|CAG31485.1| hypothetical protein RCJMB04_6o15 [Gallus gallus]
          Length = 402

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 187/351 (53%), Gaps = 15/351 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ +A  + G    T VQ + + P L+ +D L  A+TGSGKT AF L +   L    D
Sbjct: 11  PWLVEQA-RQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQVL--SED 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +        L + PTRELA Q+  +   L    G+   V +GG+ +  +  +L    H+
Sbjct: 68  PY----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKPHV 123

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRML 183
           V+ TPGRL DH+R     ++  LK +VLDEAD +L+ G  D   D+E IL++ P +R+ L
Sbjct: 124 VIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFIADLEVILEAVPARRQTL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-- 241
           +FSAT++  +  L             ASE R   ++D R +LV  + +D  +V++++   
Sbjct: 184 LFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQ 243

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H   + I+F  T         +L +  F  VAL   + Q++R  AL   +    ++ I
Sbjct: 244 DEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAKFKSSIFKILI 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 304 ATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQ 354


>gi|56421010|ref|YP_148328.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380852|dbj|BAD76760.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 436

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/356 (34%), Positives = 191/356 (53%), Gaps = 16/356 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+       LL   ++  
Sbjct: 15  IIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY-------LLPIIEKIK 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
           P  A + A+  APTRELA Q+  E   +     K  ++VA C IGG    +    L    
Sbjct: 68  PERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    PK  +ML+F
Sbjct: 128 HIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SATI   +    K Y ++   V++  +   + +I++  VL+ L  R+    + ++L  + 
Sbjct: 188 SATIPEKLKPFLKKYMENPTFVHVDPKRTANQNIEH--VLIPLRGREKTKLLRDVLLSYN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   +  +ATD+
Sbjct: 246 PYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQYVVATDL 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    RL
Sbjct: 306 AARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIARL 361


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 190/356 (53%), Gaps = 16/356 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ ++I   +S   Y   T VQ+  +     ++D++  AQTGSGKT AF + + S +  E
Sbjct: 177 NLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILSRIFEE 236

Query: 66  NDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               +P++          P+AL +APTRELA Q+  E      ++ +   V  GG  V  
Sbjct: 237 GPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGADVST 296

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RD+  G H++V TPGRL D I+   + +  +K +VLDEAD MLD+GF   I  I++  
Sbjct: 297 QMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIREIVEKC 356

Query: 177 --PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P+  +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 357 DMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKR 416

Query: 233 NAIVNILRYHGAKN-AIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQM 289
             ++++L   G  +  +VF  T+       + L      +   ++ G+  Q+ER  AL  
Sbjct: 417 EFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQREREQALAS 476

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            R G   + +AT VAA+G+D+P+++ VI+ ++ S+ E  +HR GRTGRAG  G+++
Sbjct: 477 FRVGTTPILVATAVAAKGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRAGHTGLAI 532


>gi|289769727|ref|ZP_06529105.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289699926|gb|EFD67355.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 495

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 73  DMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ G 
Sbjct: 130 AGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGGV 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P  +RML 
Sbjct: 190 EVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQRML- 248

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 249 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHGADKHAATTEIAARDG- 307

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  TR +V R T+ L     +  AL G  SQ +R+  L   ++G   V +AT+VA
Sbjct: 308 -RVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVATNVA 366

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  L+LV++ +  S+ ++ LHR GRT RAG  G  V  +  N +R   RL   A 
Sbjct: 367 ARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPVTPNQRRAMTRLMTTAG 426

Query: 365 VSVVWEP 371
           +     P
Sbjct: 427 IVPQTTP 433


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 186/345 (53%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   PA
Sbjct: 14  EALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKL---SEGGHPA 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + +APTRELA Q+ +++E + Y      VAV  G  G+   +++R L  GA +V+
Sbjct: 71  DAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKRGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA N   +   V +A        +  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLAGNILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIRSLFAEETPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQ 353


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 190/372 (51%), Gaps = 16/372 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L +   L A   R     
Sbjct: 15  AVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLTANAPRRK--G 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA+Q+G   E       +   V  GGV    +   L+ G  I++  PG
Sbjct: 73  AVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKKGVDILIACPG 132

Query: 134 RLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D I G+G +++S L+  VLDEAD MLD+GF  D++ ++   P +R+ LMFSAT+   
Sbjct: 133 RLNDLI-GQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQNLMFSATMPAE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVF 250
           I  LA     D   V +   +     I      V   ++   +  +++       NA+VF
Sbjct: 192 IEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNLQPPVVNALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV +ATD+AARGID+
Sbjct: 252 SRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVATDIAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367
            +L  V + +L   PE  +HR GRT RAG  G +V F  P+  +  A  E+L R   + V
Sbjct: 312 SELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAGIEKLNRR-KIPV 370

Query: 368 V----WE--PAP 373
           V    W+  PAP
Sbjct: 371 VSGHPWDGVPAP 382


>gi|84495604|ref|ZP_00994723.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84385097|gb|EAQ00977.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 514

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 178/361 (49%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L+ER  ++ T +Q A L   L  +DVL   +TGSGKT AF L + + L A 
Sbjct: 24  GVPESLVRVLAERDILSPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPMLARLSAG 83

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P AL +APTRELA+Q+   L  L    G+      GGV    +   +  G 
Sbjct: 84  GTRRQ-AKRPRALILAPTRELAIQIDEALAPLAQPLGITSKTVFGGVGQGPQVNAITRGV 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV  PGRL D +    + +  ++  +LDEAD M DLGF   ++ ILD +P+  + ++F
Sbjct: 143 DVVVACPGRLEDLMNQGHVILDAVEITILDEADHMADLGFLPVVKRILDKTPRNGQRMLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL K Y    V     S     S + +  + V        + ++    G K
Sbjct: 203 SATLDAGVNTLVKRYLNSPVTHEADSAQSPVSTMSHHVLHVTTDGHLQVLRDLTAAPGRK 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  + L       V L G LSQ  R+  +     G A   +ATD+AA
Sbjct: 263 --VVFTRTKHRAKKIARQLNAEGIPAVELHGNLSQNARTRTMDAFHAGTAHTLVATDIAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++  +  R    L R+A +
Sbjct: 321 RGIHVDDVSLVIHADPPVEHKAYLHRSGRTARAGNSGTVVTLMTDDQVRDVRDLTRKAGI 380

Query: 366 S 366
           +
Sbjct: 381 N 381


>gi|256824898|ref|YP_003148858.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256688291|gb|ACV06093.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 741

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQV+ E L+  G      +Q A L   L  +D+L   +TGSGKT+AFGL   + L  E
Sbjct: 250 GVPQVLVERLARDGISTAFPIQAATLPDSLAGRDLLGRGRTGSGKTLAFGLPTIARL--E 307

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    + P A+ + PTRELA+QV   L+      G+   +  GG+    +   L+ G 
Sbjct: 308 GGRAQ-RNKPRAVILTPTRELAMQVSDALQPFAHVAGLKHKLVAGGLPYPPQISALERGL 366

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I     ++S ++  VLDEAD M ++GF  ++  I+D  P   + ++F
Sbjct: 367 DILIATPGRLIDLIEKGAADLSAVEIAVLDEADHMAEMGFLPEVTQIMDLMPSGGQRMLF 426

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L +NY  D V  +        + +++RA LV    +      I    G  
Sbjct: 427 SATLDNGIDQLVENYLVDPVTHSTDDATASVTTMEHRAFLVHPHHKKTLTNQIAARDG-- 484

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    R  + L E      AL G L+Q +R+  L   +DG   V +ATDVAA
Sbjct: 485 RTVVFVRTKLGADRVAEQLRESGVFAAALHGGLNQAQRNRVLAAFKDGGLPVLVATDVAA 544

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ +V+  +  ++ ++ LHR+GRT RAG KG+ V +   + +R  +RL  +A V
Sbjct: 545 RGIHVDDVSMVLQVDPPADHKDYLHRAGRTARAGGKGVVVTLALPHQKRTMQRLLDQAGV 604


>gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 421

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/344 (35%), Positives = 187/344 (54%), Gaps = 10/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P VI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PTVI-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN +    + P AL +APTRELAVQ+  + E L + +G+ + +  GG    ++ + L+N
Sbjct: 77  MENRQ---VNQPRALIMAPTRELAVQIHADAEPLASASGLKLGLAYGGDGYDKQLKVLEN 133

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D+ R   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 134 GVDILIGTTGRLIDYARQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRL 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L  
Sbjct: 194 NMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNDEKMRLLQTLLEE 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +AT
Sbjct: 254 EWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G SV
Sbjct: 314 DVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSV 357


>gi|229493632|ref|ZP_04387417.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
 gi|229319593|gb|EEN85429.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
          Length = 559

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 192/357 (53%), Gaps = 9/357 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +P+ +  AL+ R  + + S  +A   PD L   +VL  AQTGSGKT+AFGL + + L  
Sbjct: 39  GLPEQLVAALA-RNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSR 97

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G
Sbjct: 98  HEDRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLRRG 156

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+
Sbjct: 157 VDVLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLL 216

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   + +L + +  + V  +          +++  +LV    +D+ +  I    GA
Sbjct: 217 FSATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEHYVLLVDRGQKDSVLAEI----GA 272

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           ++   I+F  T+      T  L        +L G  +Q +R+  L+  ++GR  V +ATD
Sbjct: 273 RDGRTIMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLVATD 332

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           VAARGI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R+ +RL
Sbjct: 333 VAARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRQFKRL 389


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 182/343 (53%), Gaps = 12/343 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F +A A  L+  N      +    L
Sbjct: 57  GFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIA-ALQLIDYN-----INNCQVL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 111 ILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAGVHMVVGTPGRVHDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L +  +K  ++DEADEML  GF+  I  +    P   ++ +FSAT+   I  L  
Sbjct: 171 MEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFSATMPQDILELTT 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D  R+ + ++      I  R   VA+   D     + ++        AI++C+TR 
Sbjct: 231 KFMRDPKRILVKNDELTLEGI--RQFYVAVEKEDWKLETLCDLYETLTITQAIIYCNTRR 288

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  ++E  F V ++ G++ Q+ R   ++  R G  RV I TD+ ARGID+  + L
Sbjct: 289 KVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLARGIDVQQVSL 348

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           VI+ +L +  EN +HR GR+GR GRKG+++ FV   ++++  E
Sbjct: 349 VINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKE 391


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 260 NLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 319

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 320 GVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 379

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 380 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 439

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 440 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 499

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 500 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPV 559

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 560 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 619

Query: 357 ERLFR 361
           + L +
Sbjct: 620 QPLIK 624


>gi|212634502|ref|YP_002311027.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 440

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++   L    Y + T++Q++ +   +   DVL  A TGSGKT AF L +   L    
Sbjct: 30  IPELLA-TLDALAYQSPTAIQQSTIPAVIAGSDVLGGAITGSGKTAAFALPIIQLLAKSA 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA---KTGVVVAVCIGGVSVHRERRDLQN 123
            +   ++   +L + PTRELA QV       YA   K  + V    GGVS + + + L+ 
Sbjct: 89  KQTRQSNYVSSLILVPTRELAQQVADSF-MRYAQNIKPNLKVLAVYGGVSTNSQMQSLRG 147

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL D +    + +  + ++VLDEAD ML LGF D++  +L+  P K++ L
Sbjct: 148 GADILVATPGRLLDLMSSNAVKLDKVSSLVLDEADRMLSLGFTDELAALLEKLPAKKQTL 207

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    ++ L ++   + V V + SE +  + +  R + V  + +   +V +++ + 
Sbjct: 208 LFSATFPEEVSLLTQSLLNNPVEVQLQSEEK--NTLVQRVITVNRNRKTPLLVELIKQND 265

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F S + + +R  + L            +  Q  R+  L   + G  RV IATD+
Sbjct: 266 WQQILIFASAKYTCNRLAQKLDNAGITAEIFHSDKGQGARTRVLDGFKRGETRVLIATDI 325

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++ 
Sbjct: 326 AARGIDIEKLPIVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYQHFKVIEKKN 385

Query: 364 NVSVVWEPAPSVEA 377
            + +  E  P  EA
Sbjct: 386 KLRLEREQYPGFEA 399


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 188/363 (51%), Gaps = 15/363 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           +   T VQ+  +    + +D++  AQTGSGKT  F   + S   +     +P  +     
Sbjct: 166 FTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMR 225

Query: 75  ---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTRELA Q+  E +    ++ V   V  GG  + ++ R+L+ G  ++V T
Sbjct: 226 KAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVAT 285

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSA 187
           PGRL D +    +++  +K +VLDEAD MLD+GF   I  I++     + + R+ LMFSA
Sbjct: 286 PGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDMPTVENRQTLMFSA 345

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA ++ KD + +++        +I  + + V   D+ + ++++L        
Sbjct: 346 TFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSVLLDLLAASDGGLT 405

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+      T  L        A+ G+ +Q ER  AL   R GRA V +AT VAARG
Sbjct: 406 LVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGRANVLVATAVAARG 465

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREAN 364
           +D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        +N+ +    +  EAN
Sbjct: 466 LDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVDILEEAN 525

Query: 365 VSV 367
             V
Sbjct: 526 QEV 528


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+ +GY   T++Q+A +   L  +D+L SA TG+GKT AF L 
Sbjct: 4   LMTFEELDLSPQLL-KALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLP 62

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  + + L   T + +A   GGV+    
Sbjct: 63  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQNH 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                    IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 121 GEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETR 180

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +   A+    D ++V+     R+   I    Y A  V    +  
Sbjct: 181 WRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRRERKKIQQWYYHADNV--EHKTK 238

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  I+     + AIVF   R  V   ++ L +   +   L GE++Q +R+ A+  +++G
Sbjct: 239 LLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEG 298

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ V++ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 299 VVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYLHRIGRTARAGKKGSAISLV 353


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/385 (34%), Positives = 202/385 (52%), Gaps = 33/385 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   ++A   
Sbjct: 133 PAVM-ENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQHIMAGGP 191

Query: 65  --------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                    N R +    P AL ++PTRELA+Q+ +E      KT +  A+  GG   +R
Sbjct: 192 DMIKTPTFNNGRRT--YYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYGGRENYR 249

Query: 117 ERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ + L++G HI++ TPGRL D I    + +S  + +VLDEAD MLD+GF   I  I+  
Sbjct: 250 DQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMGFEPQIRKIVGQ 309

Query: 176 S--PKKRRML-MFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLV 226
              PK  R   MFSAT    I  LAK++ K+        RV   SEN     I+ R + V
Sbjct: 310 GMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSEN-----IEQRLLWV 364

Query: 227 ALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              ++   +++IL    A N  +VF  T+   +     L     + V++ G+L Q ER  
Sbjct: 365 NEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERER 424

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L+M R G+  + +AT VAARG+D+P++  V++ +L  + +  +HR GRTGR G  G++ 
Sbjct: 425 NLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRIGRTGRCGNLGIAT 484

Query: 346 -FVIPQN--MQRRAERLFREANVSV 367
            F   +N  + R  + L  EAN  V
Sbjct: 485 SFFNDKNRGIGRDLKTLIMEANQEV 509


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 194/392 (49%), Gaps = 22/392 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L S++L+ 
Sbjct: 136 NTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPLVSSILSN 195

Query: 66  ----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               +      S+P AL +APTREL++Q+  E      +TG+   V  GG     +  +L
Sbjct: 196 VTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADPRHQVHEL 255

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
             G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+        
Sbjct: 256 SRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQGQESDMP 315

Query: 177 -PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ L++SAT    I  LA+ +      + +        +I      V  +D+   +
Sbjct: 316 PPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVEDNDKREHL 375

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +L  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+M +    
Sbjct: 376 LRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALKMFKSASC 435

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G            R
Sbjct: 436 QVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVG------------R 483

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           A   F E N ++V +  P +    +   Q+I+
Sbjct: 484 AISFFNEKNRNIVDDLVPLLNETHQNVLQQIM 515


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 190/372 (51%), Gaps = 16/372 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L +   L A   R     
Sbjct: 15  AVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLTANAPRRK--G 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA+Q+G   E       +   V  GGV    +   L+ G  I++  PG
Sbjct: 73  AVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKKGVDILIACPG 132

Query: 134 RLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D I G+G +++S L+  VLDEAD MLD+GF  D++ ++   P +R+ LMFSAT+   
Sbjct: 133 RLNDLI-GQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQNLMFSATMPAE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVF 250
           I  LA     D   V +   +     I      V   ++   +  +++       NA+VF
Sbjct: 192 IEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNLQPPVVNALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV +ATD+AARGID+
Sbjct: 252 SRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVATDIAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSV 367
            +L  V + +L   PE  +HR GRT RAG  G +V F  P+  +  A  E+L R   + V
Sbjct: 312 SELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAGIEKLNRR-KIPV 370

Query: 368 V----WE--PAP 373
           V    W+  PAP
Sbjct: 371 VSGHPWDGVPAP 382


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 198/380 (52%), Gaps = 16/380 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+++ GY + + +Q A + P L  +D++  AQTG+GKT AF L +   L A 
Sbjct: 7   NLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDRLTAS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A  AL + PTRELA+Q+G   E       +   V  GGV    +   L+ G 
Sbjct: 67  APRKK--GAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAALKKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++  PGRL D + G+GL ++S+++  VLDEAD MLD+GF  D++ ++   P++R+ LM
Sbjct: 125 DILIACPGRLNDLV-GQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQNLM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA     D   V +   +     I      V   ++   +  +++    
Sbjct: 184 FSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWLIKNLKP 243

Query: 245 K--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           +  NA+VF  T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV +ATD
Sbjct: 244 EVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVLVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERL 359
           +AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V F  P+  +  A  E+L
Sbjct: 304 IAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAGIEKL 363

Query: 360 FREANVSVV----WE--PAP 373
            R   + VV    W+  PAP
Sbjct: 364 NRR-QIPVVSGHPWDGVPAP 382


>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 415

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 8/365 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 39  VKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 99  IVHIM-DQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQF 157

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IVV TPGRL D ++ K L +      VLDEAD M DLGF   I  I+     
Sbjct: 158 KELKSGCEIVVATPGRLIDLLKMKALRMFRATYSVLDEADRMFDLGFEPQIRSIVGQIRP 217

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 218 DRQTLLFSATMPYKVERLAREILTDLIRVTVGQVGSANEDIK-QVVNVLPSDAEKMPWLL 276

Query: 239 LRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF + +A V      L +H F+V AL G+  Q  R   LQ  + G  
Sbjct: 277 EKMPGMIDDGDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIY 336

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R
Sbjct: 337 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESR 396

Query: 355 RAERL 359
            A  L
Sbjct: 397 FAGEL 401


>gi|258622174|ref|ZP_05717200.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585498|gb|EEW10221.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 452

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 179/331 (54%), Gaps = 5/331 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +N  FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KNKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  +         +  GG + + + + L      +V TPGR
Sbjct: 78  PRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A++  IL     +  I+F 
Sbjct: 198 VNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VI+ ++  + E  +HR GRTGRAG KG
Sbjct: 318 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKG 348


>gi|310798110|gb|EFQ33003.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 607

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 203/373 (54%), Gaps = 18/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +    A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L A 
Sbjct: 134 NLSEKTMTAIKEMGFTKMTEIQRRGIPPLLSGKDVLGAAKTGSGKTLAFLIPAVEMLHAL 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   LQ
Sbjct: 194 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEADKLQ 248

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRR 181
            G ++++ TPGRL DH++       +LK++++DEAD +L++GF D++  I+   PK  R+
Sbjct: 249 KGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDDRQ 308

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
            ++FSAT +  +  LA+ + +   + VN+  E +QHS ++       + D D     + +
Sbjct: 309 TMLFSATQTTKVEDLARISLRPGPLYVNV-DEQKQHSTVENLEQGYVICDADKRFLLLFS 367

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      + +   
Sbjct: 368 FLKRNLKKKVIVFFSSCNSVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGT 427

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRR 355
            I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+ F+ P  +   
Sbjct: 428 LICTDVAARGLDIPAVDWIVQVDPPDDPRDYIHRVGRTARGANSKGRSLMFLQPSEVGFL 487

Query: 356 AERLFREANVSVV 368
                +EA V VV
Sbjct: 488 TH--LKEARVPVV 498


>gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 789

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 192/360 (53%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L ++L   
Sbjct: 78  GLPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASLAGG 137

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 138 H---TEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQIYALERGV 194

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++ +++  +LDEAD+M DLGF  ++  +LD  P+  + ++F
Sbjct: 195 DILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPEGGQRMLF 254

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I++L K Y K+ V   + +     + + +  ++V   D+      I    G  
Sbjct: 255 SATMENEISSLVKRYLKNPVSHEVDAAQGAVTTMSHHILIVKPRDKAPVTGAIAARKG-- 312

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 313 RTIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLVATDVAA 372

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 373 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 432


>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
          Length = 722

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 214 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 268

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 269 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 326

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 327 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 386

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 387 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 446

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 447 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 506

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 507 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 561


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 204/368 (55%), Gaps = 14/368 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E + + G+   T +Q       LR +D++  A+TGSGKT+  G  +   +L +  
Sbjct: 189 PEILRE-VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTL--GYLIPGFILLKRL 245

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + +    P  L ++PTRELA Q+  E +  + ++  + +VC+ GG     + RDL+ GA 
Sbjct: 246 QHNSRDGPTVLVLSPTRELATQIQDEAK-KFGRSSRISSVCLYGGAPKGPQLRDLERGAD 304

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+
Sbjct: 305 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 364

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   + V+VNI + ++   +  I     ++   ++   +  ILR    
Sbjct: 365 ATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEP 424

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    +  + LA   +   A+ G+ SQ ER + L   R GR  + +ATD
Sbjct: 425 GSK-IIIFCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATD 482

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++  F   Q+ +  ++  ++
Sbjct: 483 VAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKI 542

Query: 360 FREANVSV 367
              AN SV
Sbjct: 543 LEGANQSV 550


>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 456

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 128/372 (34%), Positives = 202/372 (54%), Gaps = 12/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    Y   T VQ A + P L+ +D+L +A+TG+GKT AF L  A T  AE    + A
Sbjct: 14  KALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLP-ALTRTAELP-LNGA 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           + P  L +APTRELA QV  +    YAK   + +   +GG+    + R L     ++V T
Sbjct: 72  ATPRVLVLAPTRELAKQVT-DAARKYAKFMKLNIVDVVGGMPYREQLRLLSRPVDVLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  + + +  ++ ++LDEAD MLD+GF DD+E I    P  R+ L+F+AT+  
Sbjct: 131 PGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQTLLFTATLDR 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK----NA 247
            +  LA N  ++  RV + S   Q + ++    L    D D+    +L++  A+     A
Sbjct: 191 RMAQLAGNLLRNPERVAVES---QATSVNVEQRLHHADDMDHK-RRLLQHFAAQEEVGKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+       + L+       AL G++ Q +R+  LQ +R G+ R+ +ATDVAARG
Sbjct: 247 IIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLLVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+ +L  + E+ +HR GRTGRAG  G+++    +  +    R+ R    ++
Sbjct: 307 IDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVRIERYTKATL 366

Query: 368 VWEPAPSVEAIR 379
                P +E  R
Sbjct: 367 EVHVVPGLEPTR 378


>gi|146104369|ref|XP_001469806.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074176|emb|CAM72918.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
          Length = 571

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 193/359 (53%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + ALA   L E
Sbjct: 111 VPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             +      P+ + +APTRELA Q+  E E +      +   CI GG     +   L+ G
Sbjct: 171 PLKV--GDGPMVIVLAPTRELAQQI--EQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQG 226

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ LM
Sbjct: 227 VHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLM 286

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA ++QK+ VR+N+ S E   + D+    +L + + + + +  ++  H 
Sbjct: 287 FSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLMERHR 346

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++FC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDV
Sbjct: 347 NQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDV 406

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFR 361
           AARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  Q  A  +F+
Sbjct: 407 AARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQ 465


>gi|37676020|ref|NP_936416.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|326424408|ref|NP_763420.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200560|dbj|BAC96386.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319999798|gb|AAO08410.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 447

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 180/337 (53%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L    +   A  
Sbjct: 20  LKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--KTKALSARD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +         + +GG + + + + L      +V TPGR
Sbjct: 78  PRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKALARYPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  K + +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  R  L    D   A++  +L     +  I+F 
Sbjct: 198 VNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERVLSEAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR+   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 258 ATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTDVASRGLDIS 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 318 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLV 354


>gi|115958772|ref|XP_001180014.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Strongylocentrotus purpuratus]
          Length = 785

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 29/374 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLL 63
           +P+ I + ++E GY + + +Q   +   L+ +DV+  A+TGSGKT AF + L    STL 
Sbjct: 363 LPKHITDIIAEVGYKDPSPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVWISTLP 422

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 423 KIERDEDKDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVTIIGGISREDQGFKLRL 482

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L +     VVLDEAD M+D+GF  D++ IL+  P      
Sbjct: 483 GCEIVIATPGRLIDVLENRYLVLCQCTYVVLDEADRMIDMGFEPDVQKILEYLPVTNQKP 542

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+  A+  +A++Y +    V I S  +    
Sbjct: 543 DSEEAEDSAKLLANFASKKKYRQTVMFTATMPTAVERVARSYLRRPAVVYIGSIGKPVES 602

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +     + +  ++   ++ +L        ++F + +  V    K L +  F    L G  
Sbjct: 603 VQQLVYMTSNQEKRQKLIQLLEKGIDPPVLIFVNQKKRVDALAKRLEKMGFNATTLHGGK 662

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++ N E+  HR GRTGRA
Sbjct: 663 SQEQREYALASLKAGLKDILVATDVAGRGIDIKDVSVVINFDMAKNIEDYTHRIGRTGRA 722

Query: 339 GRKGMSV-FVIPQN 351
           G+ G +V F+ P +
Sbjct: 723 GKTGTAVSFLTPDD 736


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 189/369 (51%), Gaps = 17/369 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++  P  + + +S+ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 90  VKSFHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 148

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +      +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 149 AIIHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQV 208

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 209 RDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 268

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDR 231
            R+ L +SAT    +  LA+    +  +V I S +       RQH DI      V+ + +
Sbjct: 269 DRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDI------VSENQK 322

Query: 232 DNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            N +V +L         ++F  T+    + T+ L    +  +++ G+ SQ ER   L   
Sbjct: 323 YNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEF 382

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G++ +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +      
Sbjct: 383 KAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTA 442

Query: 351 NMQRRAERL 359
              R A+ L
Sbjct: 443 GNARFAKEL 451


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 175/338 (51%), Gaps = 11/338 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           R Y   + +Q   +   L  +DVL  A+TGSGKT AF + +    L +         P A
Sbjct: 129 REYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQHALNQAP-LRQGDGPFA 187

Query: 78  LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           + +APTRELA Q+  E + +  +  G   A+ +GG ++  +R  L+ G  IVV TPGRL 
Sbjct: 188 IVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQRSMLRGGVQIVVATPGRLI 247

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++    N++ +  VVLDEAD MLD+GF   I  +L + PK  + L+FSAT+   +  L
Sbjct: 248 DHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMNLPKPHQTLLFSATMPVEVEAL 307

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---------HGAKNA 247
           A +Y    V+V +   +   +++  +   V  +++ + +V +L           H     
Sbjct: 308 AADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRLVTMLISEQREAQKLGHSMPMT 367

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF   +       ++L        AL G  SQ ER  AL   + GR  V +ATDVAARG
Sbjct: 368 VVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALHDYKTGRCSVLVATDVAARG 427

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  +  V++ +L  N E+ +HR GRTGRAG  G S 
Sbjct: 428 LDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRST 465


>gi|209809436|ref|YP_002264974.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208010998|emb|CAQ81411.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 450

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 114/328 (34%), Positives = 180/328 (54%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KDVL S++TGSGKT+AF L +    L         + P A+ +APT
Sbjct: 30  TEIQRKAVPVAMAGKDVLASSKTGSGKTLAFVLPMLHKSLKSKS--FSKNDPRAVILAPT 87

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   L  +        A+  GG + + +   L+     +V TPGRL DH+  + 
Sbjct: 88  RELAKQVYMHLRAMLGGLTYDAALITGGENFNDQVNALRKFPKFIVATPGRLADHLEHQS 147

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATIS-PAITTLAKNYQ 201
           L ++ L+ ++LDEAD MLDLGF + ++ I  ++  +RR  LMFSAT+   A+T  A N  
Sbjct: 148 LFLNGLEMLILDEADRMLDLGFAEHLQKIHAAANHRRRQTLMFSATLDHEAVTKFAGNML 207

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRF 260
            +   V++     QH+DI     L    D   A+++ I+        ++F +TRA   R 
Sbjct: 208 DNPKVVSVGLSTDQHADITQSFYLCDHLDHKQALLDKIIETEKYFQIMIFTATRADTDRL 267

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T +L E   + VALSG+++Q  R+N +        ++ + TDVA+RG+DL  +  VI+ +
Sbjct: 268 TDLLNERKLKAVALSGDMNQTARNNIMSQFERRAHKILVTTDVASRGLDLTSVTHVINFD 327

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + E  +HR GRTGRAG+KG ++ ++
Sbjct: 328 MPKHMEEYVHRVGRTGRAGKKGTAISLV 355


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + + G+   +++Q+  + P +  +DV+  AQ+G+GKT    LA+   +       +   
Sbjct: 49  GIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAVCQII------DTSIR 102

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELA Q  + +  +     V    CIGG S+  + R L+ G H+V GTPG
Sbjct: 103 EVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPG 162

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I
Sbjct: 163 RVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEI 222

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             +   +  D VR+ +  +      I    V V   + + + + ++        A++FC+
Sbjct: 223 LEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 282

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+  
Sbjct: 283 TKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQ 342

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 343 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375


>gi|15229677|ref|NP_188490.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75335038|sp|Q9LIH9|RH51_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 51
 gi|9294321|dbj|BAB02218.1| DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|17979083|gb|AAL49809.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|20465335|gb|AAM20071.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|332642600|gb|AEE76121.1| DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]
          Length = 568

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 7/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L  E  RFSP +
Sbjct: 103 AIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKE--RFSPRN 160

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I PTRELA+Q     E L       V++ IGG +   E + + +G+++V+ TPG
Sbjct: 161 GTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPG 220

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++  K     HLK +V+DEAD +L+  F +D+  IL   PK R+  +FSAT +  
Sbjct: 221 RLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSK 280

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +  LA+      V V++    R+ ++  ++    +V    R   +++ L+ +  K  +VF
Sbjct: 281 VKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVF 340

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST  SV   T+++      V  + G + Q  R+         +  + + TDVAARG+D+
Sbjct: 341 FSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDI 400

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFV-IPQNMQ 353
           P ++ +I  +    P   +HR GRT R  G KG ++ V IP+ +Q
Sbjct: 401 PSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ 445


>gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 442

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKTVA+ L +   LL    + S  
Sbjct: 17  DALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTVAYLLPVLQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRVLVLTPTRELAMQVAEQAIELAKHTNLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   ++   +D V +      R+   I    YRA    L  +   + ++L+      ++
Sbjct: 195 AIKEFSERLLQDPVEIEADPSRRERKKIQQWYYRAD--TLEHKTKLLCHLLKEPEVTKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELVGWLREAGINSCYLEGEMVQAKRNEAMKRMLDGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIPDISHVFNFDMPRTADTYLHRIGRTGRAGRKGIAISLV 352


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 171/336 (50%), Gaps = 1/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +Q   +   L  +D++ +AQTG+GKT  F L +   L    D+ +  
Sbjct: 14  QALETLGYETPTPIQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPILQRLSESEDKVASN 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S  + L + PTRELA QV            V      GGVS++ +   L+ G  ++V TP
Sbjct: 74  SIRV-LVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMRLRRGVDVLVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      +    ++ +VLDEAD MLDLGF  +++ +  + P+KR+ L+FSAT S  
Sbjct: 133 GRLIDLFTQNAIKFKQVQTLVLDEADRMLDLGFAHELDTLFAALPRKRQTLLFSATFSDE 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I +LAK   +D + + +A  N     I    V V    +    + + +       +VF  
Sbjct: 193 IRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTELFLFMRKDRKWGQVLVFVK 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V      L     +  A+ G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ D
Sbjct: 253 TRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQILVATDVAARGLDIDD 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 313 LPQVVNYDLPIVAEDYIHRIGRTGRAGATGQAISLV 348


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score =  184 bits (466), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 184 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 243

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 244 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 303

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 304 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 363

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 364 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 423

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 424 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 483

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 484 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 529


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 181 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 240

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 241 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 300

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 301 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 360

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 361 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 420

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 421 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 480

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 481 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 526


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 180 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 239

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 240 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 419

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 420 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 479

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 480 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 525


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 189/370 (51%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q   + P  +  DV+  AQ+G+GKT  F   + + +   
Sbjct: 46  NLHENLLRGIYAYGFEKPSAIQSKGIVPFTKGLDVIQQAQSGTGKTATFCAGILNNIDYN 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         AL +APTRELA Q+ + +  L     V    C+GG SV  + R L  G 
Sbjct: 106 SNECQ------ALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDARILGAGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D +R + L    +K   LDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 QVVVGTPGRVFDMLRRRYLRADSIKMFTLDEADEMLSRGFKDQIYDIFQLLPPKLQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I    V V   + + + + ++      
Sbjct: 220 SATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  + E    V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R  N
Sbjct: 340 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYN 399

Query: 365 VSVVWEPAPS 374
              V E  PS
Sbjct: 400 --TVIEELPS 407


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 180 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 239

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 240 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 419

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 420 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 479

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 480 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 525


>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
 gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
          Length = 577

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 125/412 (30%), Positives = 196/412 (47%), Gaps = 35/412 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G  + T +Q   L   L  +D++  A TGSGKT+AF L L    L E 
Sbjct: 149 LPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPLIMLALEEE 208

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
           +  R      P+ L + P+RELA Q    +E   +         +   +CIGG  +  + 
Sbjct: 209 EKSRLKGGEGPVGLILCPSRELAKQTLDVIEEFVSVVNSSRCCHLRAMLCIGGTDMRSQL 268

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV T GRL D +  K +N+   K + LDEAD + D GF DDI  ++D    
Sbjct: 269 EAIRRGVHIVVATTGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIRKVMDHLKF 328

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A+      V VN+A       D+  +   V    +   ++  
Sbjct: 329 QRQTLLFSATMPRKIQEFARGALVKPVVVNVARAGAASLDVVQQVEYVKQEAKMVYLLEC 388

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC ++  V    + L     +VV++ G   Q+ER +A+   + GR  V 
Sbjct: 389 LQ-QTPPPVLIFCESKGDVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKFKQGRKDVL 447

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-- 356
           +ATDVA++G+D P ++ VI+ ++ S  EN +HR GRTGR G+ G++   I          
Sbjct: 448 VATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINSKQSESTLL 507

Query: 357 --ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
             + L REA   V                      P FL+S++     MV+V
Sbjct: 508 DLKYLLREAKQKV----------------------PAFLESLEDPSTSMVEV 537


>gi|154300880|ref|XP_001550854.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
 gi|160380613|sp|A6SCT6|DBP3_BOTFB RecName: Full=ATP-dependent RNA helicase dbp3
 gi|150856326|gb|EDN31518.1| hypothetical protein BC1G_10578 [Botryotinia fuckeliana B05.10]
          Length = 592

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 185/333 (55%), Gaps = 24/333 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A     L  +DV+  A+TGSGKT+AF +   +              P A+ ++PT
Sbjct: 210 TPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCIN------------KGPRAVVVSPT 257

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q   ++  L   +G+      GGV    + R L+  A IVV TPGRL D I    
Sbjct: 258 RELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRALKT-ADIVVATPGRLNDLINQGC 316

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKNYQ 201
            ++S  + VVLDEAD MLD GF ++I  I++++P   KR+ LMF+AT   ++  LA  + 
Sbjct: 317 ADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELAATFM 376

Query: 202 KDAVRV----NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-----IVFCS 252
              V++    N   + R +S I  +  +V   D++  ++ +L+ + + +      +VFC 
Sbjct: 377 TSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRILVFCL 436

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +   +R    + +  F+V  + G+LSQ++R+ +L+  + G   V +ATDVAARG+D+P 
Sbjct: 437 YKKEATRVESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPA 496

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++LVI+       E+ +HR GRTGRAG+ G+++
Sbjct: 497 VKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAI 529


>gi|148557617|ref|YP_001265199.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502807|gb|ABQ71061.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 453

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 170/325 (52%), Gaps = 1/325 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+ +GY   T +Q   + P L  +D+   AQTG+GKT AF L  +   L +N + +
Sbjct: 27  IQRALAAKGYDIPTPIQAQAIPPLLEGRDLCGIAQTGTGKTAAFALP-SLHHLHDNLKHT 85

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P      L +APTRELA Q+            + VA   GGV ++++ R LQ G  I+V 
Sbjct: 86  PPQGCRMLVLAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINKQIRQLQRGVDILVA 145

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  + L++  ++  VLDEAD+MLDLGF   ++ +    PKKR+ L FSAT+ 
Sbjct: 146 TPGRLLDLIDQRALSLKFVEIFVLDEADQMLDLGFIHALKRVDQLLPKKRQSLFFSATMP 205

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI  L   +  +  +V++A ++     ++  A      ++   +   +R      A+VF
Sbjct: 206 KAIAELGDRFLTNPAKVSVAPQSTTAERVEQFATFCNPQEKQALLTMRIRSEPIDRALVF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  K L        A+ G  SQ +R  AL + R G  ++ +ATD+AARGID+
Sbjct: 266 TRTKHGADRVVKNLRAAGIAAEAIHGNKSQPQRERALGLFRTGEVKILVATDIAARGIDV 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRT 335
             +  V + EL +  E  +HR GRT
Sbjct: 326 GGVSHVFNFELPNVAEQYVHRIGRT 350


>gi|54302661|ref|YP_132654.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 474

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 185/339 (54%), Gaps = 9/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+  G+   T +Q   +   +  KDVL S++TGSGKT+AF L     +     R  P + 
Sbjct: 43  LTHLGFERATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQRMY----RGKPFTR 98

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QV  +L  L A T    A+ +GG + + + ++ +     VV TP
Sbjct: 99  RDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPMFVVATP 158

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-S 190
           GR  DH+  +  ++  L+ ++LDEAD MLDLGF   +  I + ++ ++R+ LMFSAT+ +
Sbjct: 159 GRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRRQTLMFSATMDN 218

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             +  +A        R++I S N +H+DI  R  L    D   A+++ +L        I+
Sbjct: 219 EDVIEMASEMLNAPKRLSIGSSNEEHTDITQRFYLCDHLDHKQALLDKVLETEDYNQVII 278

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TDVA+RG+D
Sbjct: 279 FTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVTTDVASRGLD 338

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 339 IEGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLV 377


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 187/359 (52%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 137 FPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 196 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 254

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 255 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 314

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRD---NAIVNILR 240
           SAT    +  LA+++  D ++VNI S +    H       ++     RD     +  I+ 
Sbjct: 315 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIME 374

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 375 ENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 434

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 435 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 493


>gi|156845404|ref|XP_001645593.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380615|sp|A7TJ36|DBP3_VANPO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|156116258|gb|EDO17735.1| hypothetical protein Kpol_1033p40 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 530

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 182/315 (57%), Gaps = 9/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KDV+  A+TGSGKT AFG+   + +L ++      +    L I+PTRELA Q+   L  L
Sbjct: 153 KDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNLVIL 212

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
             K G+      GGV    +R  L+  + +VV TPGRL D I+    N+S++  +VLDEA
Sbjct: 213 TDKVGLECCCVYGGVPKDEQRTQLKR-SQVVVATPGRLLDLIQEGAANLSNVNYLVLDEA 271

Query: 158 DEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           D ML+ GF +DI+ I+ ++    R+ LMF+AT    +  LA  +    ++V+I + +   
Sbjct: 272 DRMLEKGFEEDIKNIIRETKSTGRQTLMFTATWPKEVRELASTFMNSPIKVSIGNTDELS 331

Query: 217 SDIDYRAVLVALS--DRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHLF 269
           ++     ++  +    ++  ++ +L+ +  G+K     ++F   +   +R  + L  + +
Sbjct: 332 ANKRITQIVEVIDPFKKERKLLELLKKYQSGSKKDDKVLIFALYKKEAARVERNLNYNGY 391

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +V A+ G+LSQQ+R+NAL   + GR+ + +ATDVAARG+D+P+++ VI+       E+ +
Sbjct: 392 KVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYV 451

Query: 330 HRSGRTGRAGRKGMS 344
           HR GRTGRAG+ G +
Sbjct: 452 HRIGRTGRAGKTGTA 466


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/331 (34%), Positives = 185/331 (55%), Gaps = 10/331 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      FS 
Sbjct: 25  VAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADGVAASSFSE 84

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG+S   + RDL  G +++ GT
Sbjct: 85  QQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLRGCNVLCGT 144

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + ++ L+ +V+DEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 145 PGRLMDMIGRGK-VGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEERQTLMFS 203

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ +KD + + +       SD++ + V V    + + +++IL+  G +
Sbjct: 204 ATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDILKNTGTE 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 264 RTMVFVETKRQADFIAAFLCQENVATTSIHGDREQREREQALGDFRSGKCPVLVATSVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           RG+D+ D++ V++ +L +N ++ +HR GRTG
Sbjct: 324 RGLDIKDVQHVVNFDLPNNIDDYVHRIGRTG 354


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 274 NLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 333

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 334 GVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 393

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 394 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 453

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 454 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 513

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 514 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPV 573

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 574 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 633

Query: 357 ERLFR 361
           + L +
Sbjct: 634 QPLIK 638


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  A   +   
Sbjct: 117 FPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLP-AMVHINAQ 175

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GG     + RDLQ G  
Sbjct: 176 PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVE 235

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ L+FS
Sbjct: 236 ICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFS 295

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-------RQH----SDIDYRAVLVALSDRDNAI 235
           AT    +  LA ++  D ++VNI S +        QH    +D D R+ L++  ++    
Sbjct: 296 ATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEK---- 351

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I + +G    ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 352 --ISQENG--KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 407

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 408 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 467

Query: 356 AERL 359
           A  L
Sbjct: 468 AREL 471


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 184/364 (50%), Gaps = 20/364 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  A   +   
Sbjct: 104 FPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLP-AMVHINAQ 162

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GG     + RDLQ G  
Sbjct: 163 PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVE 222

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ L+FS
Sbjct: 223 ICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFS 282

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-------RQH----SDIDYRAVLVALSDRDNAI 235
           AT    +  LA ++  D ++VNI S +        QH    +D D R+ L++  ++    
Sbjct: 283 ATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEK---- 338

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I + +G    ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 339 --ISQENG--KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 394

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 395 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 454

Query: 356 AERL 359
           A  L
Sbjct: 455 AREL 458


>gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 556

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 178/344 (51%), Gaps = 10/344 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSP 71
           + L + GY   T +Q   +   L   DVL +AQTG+GKT AF L +   +  ++ +R  P
Sbjct: 86  QGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQIMWEDDQERREP 145

Query: 72  ASAPL---------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +              L ++PTREL+ Q+         KT +   V  GGV+ + + R+LQ
Sbjct: 146 SKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGGVNQNPQVRELQ 205

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G   +V TPGRL D +    +++  ++ +VLDEAD MLD+GF  D++ IL   P+ R+ 
Sbjct: 206 SGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKRILKFLPRDRQN 265

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA     D V + IA +      I+     VA +D+   + + +   
Sbjct: 266 LLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQADKPRLLNHFIETK 325

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + +VF  T+       + L +   +  A+ G  +Q  R   L   ++    V +ATD
Sbjct: 326 ATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKFKNDELDVLVATD 385

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           VAARGID+  ++ VI+ +  + PE  +HR GRTGRAGR+G +V 
Sbjct: 386 VAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVM 429


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 182/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L A T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + ++FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRNQTMLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   + ++L+   A   IV
Sbjct: 196 IKDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--NLEHKVELLKHLLKQEEATRTIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V    ++L         L GE++Q +R+  ++ + DGR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 314 IPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|322503578|emb|CBZ38664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 193/359 (53%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + ALA   L E
Sbjct: 111 VPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             +      P+ + +APTRELA Q+  E E +      +   CI GG     +   L+ G
Sbjct: 171 PLKV--GDGPMVIVLAPTRELAQQI--EQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQG 226

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ LM
Sbjct: 227 VHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLM 286

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA ++QK+ VR+N+ S E   + D+    +L + + + + +  ++  H 
Sbjct: 287 FSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLMERHR 346

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++FC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDV
Sbjct: 347 NQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDV 406

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFR 361
           AARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  Q  A  +F+
Sbjct: 407 AARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQ 465


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 188/366 (51%), Gaps = 29/366 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 18  PEII-DIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 76

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 77  IERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLG 136

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 137 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 196

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  +     
Sbjct: 197 TEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMGKPTERT 256

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 257 EQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 316

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTGRAG
Sbjct: 317 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTGRAG 376

Query: 340 RKGMSV 345
           + G ++
Sbjct: 377 KTGCAI 382


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 180/328 (54%), Gaps = 10/328 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD +  AQ+G+GKT  F + +   +       + +    AL ++PTRELA Q+   ++ L
Sbjct: 64  KDTIAQAQSGTGKTATFSIGMLEVI------DTKSKDCQALILSPTRELAQQIQSVVKHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                V    CIGG  V  + + LQ G  IV GTPGR+ D I+ + L   ++K ++LDEA
Sbjct: 118 GDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE++  GF++ I  I    P   ++++ SAT+S  +  +   +  D V++ +  ++    
Sbjct: 178 DELMTKGFKEQIYEIYRYLPPGVQVVVVSATLSREVLEVTGKFTTDPVKILVKRDDITLE 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    +     D + + + ++        A++FC+T+  V+  T  + +  F VVA+ G
Sbjct: 238 GIKQYHIQCEKEDWKFDTLCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q ER + +   R G +RV I+TDV ARGID+  + LVI+ +L ++ EN +HR GR+G
Sbjct: 298 DMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQ---NMQRRAERLFR 361
           R GRKG+++ ++ +   +  R  ER +R
Sbjct: 358 RFGRKGVAINLVTKEDVDELRDIERFYR 385


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 177/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+      S   A
Sbjct: 16  LQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT S  I 
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFSDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF  TR
Sbjct: 195 AMAATILRGPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMHLVAENKWEHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 NGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP- 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGG 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA    +  +   +V++L+   A  +I
Sbjct: 195 AINDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--DIQHKTALLVHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGI
Sbjct: 253 VFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVNVLIATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNFDMPRSSDTYLHRIGRTGRAGRKGTAISLV 352


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S    +     PA A     
Sbjct: 209 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMS 268

Query: 75  --------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 269 YGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 328

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRM 182
           ++V TPGRL D I    +++ ++  +VLDEAD MLD+GF   I  I++     S  +R+ 
Sbjct: 329 LLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQIRRIVEGEDMPSVNERQT 388

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  H
Sbjct: 389 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTH 448

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+      +  L    F   A+ G+ +Q+ER  AL+M R  R  + +AT
Sbjct: 449 GTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQRERERALEMFRSARCPILVAT 508

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 509 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 552


>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 1/332 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +   +L    +  P +
Sbjct: 30  ALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILHRMLENRIKPLPKT 89

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L ++PTREL+ Q+            +  A+ IGGV + R+ R +  G  ++V TPG
Sbjct: 90  CRV-LVLSPTRELSGQILESFNAYGRHIRLASALAIGGVPMGRQVRSIMPGLDVLVATPG 148

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++   L ++ ++ +VLDEAD MLD+GF  DI  I+   P KR+ L FSAT+   I
Sbjct: 149 RLLDLVQTNALKLTQVEFLVLDEADRMLDMGFIHDIRKIVAKLPIKRQTLFFSATMPKDI 208

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA+   +D  RV +         I  R + +  S +   +  IL+      A+VF  T
Sbjct: 209 ADLAEQMLRDPARVAVTPVASTVDRITQRVIQLDHSAKPTVLAQILKQDDVNRALVFTRT 268

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K LA       A+ G  SQ  R   L   R G     +ATD+AARGID+  +
Sbjct: 269 KHGADKVVKGLARAGIAAEAIHGNKSQNHRERVLAAFRTGEILTLVATDIAARGIDVDGV 328

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V++ +L + PE  +HR GRT RAG +G+++
Sbjct: 329 SHVVNFDLPNIPETYVHRIGRTARAGAEGVAI 360


>gi|320158163|ref|YP_004190541.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319933475|gb|ADV88338.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 443

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 180/337 (53%), Gaps = 5/337 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L    +   A  
Sbjct: 16  LKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--KTKALSARD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA QV  EL  +         + +GG + + + + L      +V TPGR
Sbjct: 74  PRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKALARYPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  K + +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAE 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A        R+ I   N +H DI  R  L    D   A++  +L     +  I+F 
Sbjct: 194 VNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERVLSEAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR+   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDVA+RG+D+ 
Sbjct: 254 ATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTDVASRGLDIS 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 314 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLV 350


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 186/353 (52%), Gaps = 18/353 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------ 63
           +I EA+    Y   T VQ+  +    + +D++  AQTGSGKT AF L + S++       
Sbjct: 150 IINEAIKLANYTVPTPVQKNAIPIINKGRDLMSCAQTGSGKTAAFLLPMLSSIFHSGPGE 209

Query: 64  AENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           + N   S         PLAL ++PTRELA Q+  E      ++ V   V  GG  V  + 
Sbjct: 210 SANQNSSGYRGRRKIYPLALVLSPTRELASQIYEESRKFAYRSQVRPCVIYGGADVGAQM 269

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175
           RDL  G H++V TPGRL D + RGK + + + + + LDEAD MLD+GF   I  I+  D+
Sbjct: 270 RDLDRGCHLLVATPGRLADFLDRGK-IGLDYCRYLCLDEADRMLDMGFEPQIRRIVEKDA 328

Query: 176 SPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P K  R+ LMFSAT    I  LA+++  + + + +        +I  + V V  +D+ N
Sbjct: 329 MPPKGDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVWVDENDKIN 388

Query: 234 AIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            + ++L         +VF  T+         L +  F+   + G+ +Q+ER  AL+  R+
Sbjct: 389 FLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREGALKSFRE 448

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
               V +AT VAARG+D+P++  VI+ +L S+ +  +HR GRTGR G  G++ 
Sbjct: 449 AVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIGLAT 501


>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 442

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 192/374 (51%), Gaps = 7/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ E L    Y   T++Q  I+   L  KDVL  A+TGSGKT AF L +   L   +
Sbjct: 31  IPELL-ETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQKLAKAS 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA---KTGVVVAVCIGGVSVHRERRDLQN 123
            R +  +    L + PTRELA QV       Y+   K  +      GGVS + + + L+ 
Sbjct: 90  PRKAGGNFVSCLVLVPTRELAQQVADSF-MRYSQLIKPNLKTLAVYGGVSTNVQMQSLRG 148

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVV TPGRL D I    L + +   +VLDEAD ML LGF +++  +L   PK ++ L
Sbjct: 149 GADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPKTKQTL 208

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  L  +   + V V + S   + S +  R + V  + +   +  +++ + 
Sbjct: 209 LFSATFPEEVRELTDSLLNNPVEVQLQSS--EESTLVQRVITVNRNRKTALLAQLIKDNQ 266

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F S + S +R  + L            +  Q  R+  L+  + G   V IATD+
Sbjct: 267 WQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISVLIATDI 326

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++ 
Sbjct: 327 AARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIEKKN 386

Query: 364 NVSVVWEPAPSVEA 377
            + +  E  P  EA
Sbjct: 387 KLRLEREQIPGFEA 400


>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 714

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 187/372 (50%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+P  +   + + GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L
Sbjct: 284 NLPPRLLSVVDQVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDL 343

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +  +    P AL +APTREL  Q+  E +      G      +GG S+  +   L+N
Sbjct: 344 PPLEDHNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAYALRN 403

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GA I+V TPGRL D I  + L +     V++DEAD M+DLGF + +  ILD+ P      
Sbjct: 404 GAEIIVATPGRLVDCIERRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEKP 463

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              + R+ +M++AT+ P +  +AK Y +    V I +       
Sbjct: 464 DTDDAENAQLMKRYLGGNDRYRQTMMYTATMPPVVEKIAKKYLRRPAVVTIGNAGEAVDT 523

Query: 219 IDYRAVLVALSD-RDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           ++ R   V+  D R   +  IL     A   IVF + + +     + +    +  V L G
Sbjct: 524 VEQRVEFVSGEDRRKKRLQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMGWSAVTLHG 583

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTG
Sbjct: 584 SKTQEQREAALASVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 643

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 644 RAGKSGVAITFL 655


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 180 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 239

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 240 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 419

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 420 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 479

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 480 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 525


>gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 807

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/356 (35%), Positives = 181/356 (50%), Gaps = 3/356 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  G      +Q A +   L  KDVL   QTGSGKT+AFGL + + L+    R +P 
Sbjct: 353 ERLARDGITAPFPIQAATIPDALAGKDVLGRGQTGSGKTLAFGLPMITRLVEAGLRRAPR 412

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTRELA+QV   LE L    G+   +  GG+S   +   L  G  I++ TP
Sbjct: 413 R-PHALVLVPTRELAMQVSDALEPLVHVAGLRHKLVAGGLSYTTQIAALNKGVDILIATP 471

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    + +  ++  VLDEAD M ++GF  +I   LD  P + + L+FSAT+   
Sbjct: 472 GRLNDLLERGAVELDDIRITVLDEADHMAEMGFMAEITTSLDRIPAEGQRLLFSATLDNG 531

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  + + Y  D V  +          +++  +L+    +      +    G    +VFC 
Sbjct: 532 IDAIVERYLTDPVIHSTDDATASVETMEHHVLLIDPQHKKVITAEVANRPGL--TLVFCR 589

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R    L E      AL G LSQ  R+  L   RDG   V +ATDVAARGI + D
Sbjct: 590 TKLGADRIATQLREQGVLAAALHGGLSQGARNRVLGAFRDGSLPVLVATDVAARGIHVDD 649

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           + +V+  +  ++ ++ LHRSGRT RAG +G  V +   + +R  ER  REA V +V
Sbjct: 650 VSVVLQVDPPADHKDYLHRSGRTARAGDRGTVVTLALPHQRRTMERQLREAGVDIV 705


>gi|297160335|gb|ADI10047.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 478

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 193/361 (53%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+ +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 58  DLPEGLTAELARQGVTVPFPIQAAALPNALAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 117

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 118 --RAEPRR-PLALVLVPTRELAQQVTDALIPYARPLRLRLATVVGGMSIGRQAGALRDGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P   + ++F
Sbjct: 175 EVVVATPGRLHDLIERGDCRLDQVRVTVLDEADQMADMGFLPQVTRLLRQVPADGQRMLF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  A+  L + +  D    ++ +     + +++  + +A +D+   +  +    G  
Sbjct: 235 SATLDHAVGQLVRRFLDDPAVHSVDASAGAVTTMEHHVLHIADTDKRTVVTRVAARDG-- 292

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R TK L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 293 RVIMFLDTKRAVDRLTKHLLASGVRAAALHGGKSQPQRTRTLDYFKTGHVSVLVATNVAA 352

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R    L  +A +
Sbjct: 353 RGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGTVVTLVLPDQRRAMAGLMTDAGI 412

Query: 366 S 366
           +
Sbjct: 413 T 413


>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
          Length = 447

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 188/352 (53%), Gaps = 25/352 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA +   +   T +Q   +   L+ +DV+  A+TGSGKT AF L +  +LL+   R    
Sbjct: 38  EACNLLKWTEPTPIQREAIPLALQGRDVIGLAETGSGKTGAFTLPMLHSLLSNPQRL--- 94

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  ++E L +  GV  AV +GG+ +  +   L    HIV+ TP
Sbjct: 95  ---FGLILTPTRELAFQISEQIEALGSSIGVKCAVIVGGIDMISQSLMLAKKPHIVIATP 151

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG N+  LK + +D+               IL S P++RR L+FSAT++ 
Sbjct: 152 GRLVDHLENTKGFNLKSLKYLEVDK---------------ILKSIPRERRTLLFSATMTS 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + VRV I+S+ +    +    V + L  +D  +V++L      + +VFC
Sbjct: 197 KVQKLQRASLVNPVRVQISSKYQTVDKLLQYYVFIPLKMKDVYLVHLLNEAAGHSVMVFC 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST +S  R + +L       V L G+++Q +R  AL   +     V +ATDVA+RG+D+P
Sbjct: 257 STCSSTLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLLATDVASRGLDIP 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
            ++ VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q    + +R E L 
Sbjct: 317 HVDWVINYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRIEHLL 368


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 22/354 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L   + + +       
Sbjct: 21  ALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTG 80

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI----------GGVSVHRERR 119
           AP AL + PTREL +QV  +L    ++L A      A  +          GG     +  
Sbjct: 81  APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIE 140

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  
Sbjct: 141 ALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAD 200

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           R+ ++FSAT+   I TLA+ +  +   +R      +  H   +   YRA  +   D+   
Sbjct: 201 RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL---DKVEL 257

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G 
Sbjct: 258 VSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 317

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 318 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 371


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ + + ++++ + + T +Q       L  KD++  AQTGSGKT+++ L  A   +  
Sbjct: 102 NFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSY-LLPAIVHINH 160

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 161 QPFLEHGDGPICLVLAPTRELAQQV-QQVAAEYGKASRIKSTCIYGGAPQGPQIRDLERG 219

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 220 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 279

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ K+ +++N+ A +   + +I     +    ++++ ++ +L    
Sbjct: 280 WSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIM 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+      T+ +    +  + + G+ +QQER   L   + G+A + IA
Sbjct: 340 SEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +  F  P NM++  +  
Sbjct: 400 TDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLV 459

Query: 358 RLFREANVSV 367
            + REA+ ++
Sbjct: 460 SVLREAHQAI 469


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 182/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   ++ +D +  AQ+G+GKT  F +++   +  ++          A+
Sbjct: 43  GFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKH------RETQAM 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG S+  + + L+ G  +V GTPGR  D 
Sbjct: 97  VLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+   L   +LK ++LDEADE+L+ GF++ I  I    P   ++++ SAT+  ++  +  
Sbjct: 157 IKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVVVVSATLPHSVLEMTS 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC+T+  V
Sbjct: 217 KFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKKKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + ++ F V ++ G+++Q++R + +   R GR+RV I+TDV ARGID+  + LVI
Sbjct: 277 DWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLISTDVWARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L  N EN +HR GR+GR GRKG+++
Sbjct: 337 NYDLPPNRENYIHRIGRSGRFGRKGVAI 364


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 22/354 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L   + + +       
Sbjct: 24  ALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI----------GGVSVHRERR 119
           AP AL + PTREL +QV  +L    ++L A      A  +          GG     +  
Sbjct: 84  APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIE 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  
Sbjct: 144 ALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAD 203

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           R+ ++FSAT+   I TLA+ +  +   +R      +  H   +   YRA  +   D+   
Sbjct: 204 RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL---DKVEL 260

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G 
Sbjct: 261 VSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 320

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 321 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 188/375 (50%), Gaps = 23/375 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  A   +   
Sbjct: 136 FPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLP-AMVHINAQ 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GG     + RDLQ G  
Sbjct: 195 PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVE 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ L+FS
Sbjct: 255 ICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-------RQH----SDIDYRAVLVALSDRDNAI 235
           AT    +  LA ++  D ++VNI S +        QH    +D D R+ L++  ++    
Sbjct: 315 ATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEK---- 370

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I + +G    ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 371 --ISQENG--KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 426

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 427 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 486

Query: 356 AERL---FREANVSV 367
           A  L    RE+   +
Sbjct: 487 ARELVQILRESKADI 501


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/375 (32%), Positives = 188/375 (50%), Gaps = 23/375 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  A   +   
Sbjct: 123 FPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLP-AMVHINAQ 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E       + +      GG     + RDLQ G  
Sbjct: 182 PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVE 241

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ L+FS
Sbjct: 242 ICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLLFS 301

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-------RQH----SDIDYRAVLVALSDRDNAI 235
           AT    +  LA ++  D ++VNI S +        QH    +D D R+ L++  ++    
Sbjct: 302 ATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEK---- 357

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I + +G    ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 358 --ISQENG--KVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 413

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 414 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 473

Query: 356 AERL---FREANVSV 367
           A  L    RE+   +
Sbjct: 474 ARELVQILRESKADI 488


>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
          Length = 754

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 246 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 300

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 301 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 358

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 359 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 418

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 478

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 479 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 539 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593


>gi|227827050|ref|YP_002828829.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|229584218|ref|YP_002842719.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|227458845|gb|ACP37531.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228019267|gb|ACP54674.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 360

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 20/343 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +    
Sbjct: 18  MFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPI---- 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++PTRELA Q+  E++ L     + V++ IGG+S   +R+   
Sbjct: 74  LERN--------STALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGISYDDQRQ--- 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K   
Sbjct: 123 --SKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAG 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSATI   I TLAK + KD +R  +  E +   ++  + V V  +D ++ +  +L   
Sbjct: 181 F-FSATIPDEIMTLAKEFSKD-LREIVLDEYKPVEEVKQKFVKVR-NDWNDKVSKLLEEI 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 238 DGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++
Sbjct: 298 LASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAI 340


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + + G+ + T +Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 98  FPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINHQ 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R      P+AL +APTRELA Q+ +++   + ++  +   C+ GG     +  DL +G 
Sbjct: 157 PRLLRGDGPIALVLAPTRELAQQI-QQVATDFGRSSKIRNTCVFGGAPKGPQANDLMDGV 215

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 216 EIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 275

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           SAT    +  LA  + KD +++N+ S     +    + + V    +++  +  +L+   A
Sbjct: 276 SATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLKEIMA 335

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+  V   T+ +    +  V + G+ SQQER   LQ  R G+A + +AT
Sbjct: 336 EKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVAT 395

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  + A+
Sbjct: 396 DVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAAD 452


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 22/354 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L   + + +       
Sbjct: 21  ALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTG 80

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI----------GGVSVHRERR 119
           AP AL + PTREL +QV  +L    ++L A      A  +          GG     +  
Sbjct: 81  APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIE 140

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  
Sbjct: 141 ALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAD 200

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           R+ ++FSAT+   I TLA+ +  +   +R      +  H   +   YRA  +   D+   
Sbjct: 201 RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL---DKVEL 257

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G 
Sbjct: 258 VSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 317

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 318 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 371


>gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 447

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/323 (37%), Positives = 171/323 (52%), Gaps = 1/323 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +VI  AL++ GYV  T +Q   +   L  +D+L  AQTG+GKT AF L +   LL E  R
Sbjct: 11  EVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPILHRLLDERRR 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +A  AL +APTRELA Q+            + V V +GGV    + + L +G  ++
Sbjct: 71  PAPQTA-RALVLAPTRELAAQIADSFRSYGRFARMSVGVIVGGVGHGPQIKMLASGVDVL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    L +   + +VLDEAD MLDLGF   I  I+   PK+R+ L FSAT
Sbjct: 130 VATPGRLLDHIASGALRLDTTRTIVLDEADHMLDLGFLAPIRKIVSRLPKQRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA +   + V V +         +D R +LV  + + + +V +        AI
Sbjct: 190 MPKEIAALAADMLNNPVSVQVTPTATTAERVDQRVLLVDGAAKRDVLVELFADPALACAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R ++ L  H     A+ G  SQ +R  AL   R GR R  +ATD+AARGI
Sbjct: 250 VFTRTKRGADRVSQHLEAHGVGSAAIHGNKSQSQRMRALDDFRRGRTRALVATDIAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHR 331
           D+  +  V++ EL   PE  +HR
Sbjct: 310 DVDGVTHVVNFELPETPEAYVHR 332


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 182/347 (52%), Gaps = 8/347 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ E + + G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 230 FHKYPEIL-EEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHID 288

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQ 122
            +N + S    P  L +APTRELA+Q+ +E++  Y   G+  AVCI G    RE+ + L 
Sbjct: 289 GQNIKKSERGGPAVLVMAPTRELALQIDKEVK-KYEYKGIT-AVCIYGGGNRREQIKVLT 346

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  IV+ TPGRL D      L + ++  VVLDEAD MLD+GF   I  ++ S    R+ 
Sbjct: 347 DGVDIVIATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQT 406

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           +M SAT  P +  LA++Y  D +++ + + +   +    + + +   D        + + 
Sbjct: 407 VMTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFA 466

Query: 242 ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                ++  I FC  +A     +  L     Q   + G+  Q +R  AL  + DG  ++ 
Sbjct: 467 TNLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQIL 526

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAG+ G S+
Sbjct: 527 IATDVASRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSI 573


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 382 ALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIM-DQRALEEGE 440

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 441 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 500

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 501 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 560

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K + I+
Sbjct: 561 RAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVII 620

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 621 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 680

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A
Sbjct: 681 VKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYA 727


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 177/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T +Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
            I   A+    D V +      R+   I    YRA    L  +   ++++L+       I
Sbjct: 195 NIRDFAERLLNDPVELEADPSRRERKKIQQWYYRAD--DLQHKTKLLIHLLKQPDVTRCI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  +      L E   +   L GE+ Q +R+ A++ + +GR  V +ATD+AARGI
Sbjct: 253 VFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLV 352


>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
          Length = 755

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 247 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 301

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 302 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 359

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 360 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 419

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 420 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 479

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 480 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 539

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 540 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 594


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 187/340 (55%), Gaps = 5/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+++ GY + TSVQ  ++   +  +D+L SA TG+GKT AF L +   LL +  R  
Sbjct: 12  LCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVCQFLL-DYPRKQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P S  + L + PTRELA+QV  +   L   T +V  V  GG++   +R  L     I+V 
Sbjct: 71  PGSTRI-LILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRETLSQSIDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL +HI+ +  +   ++ ++LDEAD MLD+GFR  +  I   +  +++ ++FSAT+ 
Sbjct: 130 TPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRKQNMLFSATLE 189

Query: 191 -PAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              ++  AK+  ++   +      ++ + I  +  +   L+ +   +V+IL+   A   +
Sbjct: 190 GGGVSQFAKDILQNPEVIEAFPSRKEKNKIHQWYHLADDLNHKKALLVHILKEQ-ATTTV 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  +      LA     V  L GE+ Q +R  AL   + G   V +ATDVAARGI
Sbjct: 249 VFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPVLLATDVAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P++  VI+ ++    +  +HR GRTGRAG KG ++ +I
Sbjct: 309 DVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLI 348


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 181/332 (54%), Gaps = 6/332 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLA 77
           Y   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +N   S +S   P  
Sbjct: 151 YHKPTPIQKHCIPIIMSGRDLMGCAQTGSGKTAAFLIPIINKLLEKNQIMSKSSFCTPEV 210

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + + PTREL +Q+  E       T + VA+  GG +V  +   ++NG +I+V TPGRL D
Sbjct: 211 IIMTPTRELTIQIFEEARKFSRGTFLKVALTYGGTAVFHQVEKIKNGCNILVATPGRLLD 270

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRMLMFSATISPAI 193
            ++   ++ S  + ++LDEAD MLD+GF  +I+ +++     S  +R+ LMFSAT    +
Sbjct: 271 FVQRGIIDFSMTEFLILDEADRMLDMGFISEIKKMINHPTMKSSSQRQTLMFSATFPSEV 330

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK +  + + V +       SD+  +   V+   + N ++ +L  +G+   +VF   
Sbjct: 331 QHLAKTFLNNYLFVVVGIVGGACSDVVQKFFSVSKFQKRNKLIELLESNGSSKCLVFVEQ 390

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +       L E  F   ++ G+  Q+ER  AL+  + G+  + +AT VAARG+D+ ++
Sbjct: 391 KRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDILVATSVAARGLDIKNV 450

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V++ +L    +  +HR GRTGR G +G++ 
Sbjct: 451 AHVVNFDLPKTIDEYVHRIGRTGRVGNRGLAT 482


>gi|167824801|ref|ZP_02456272.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 9]
          Length = 351

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 20/318 (6%)

Query: 68  RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           R  P + P  L + PTRELA+QV       G+ L  L   +       +GGV+  ++   
Sbjct: 12  RPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ILGGVAYGQQLML 65

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DDI+ I+ ++P  R
Sbjct: 66  LAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATR 125

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           + ++FSAT+   I +L     KD  R+ I  +    S+I      V   D +D  + ++L
Sbjct: 126 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 185

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R      AI+F +T+    +    LA+  FQ  AL G+L Q  R+  ++ +R+ R RV +
Sbjct: 186 RDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLV 245

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V ++    Q   +R 
Sbjct: 246 ATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRI 305

Query: 357 ERLFR---EANVSVVWEP 371
           ER  R     NV   +EP
Sbjct: 306 ERFVRAPLPVNVVEGFEP 323


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 180/338 (53%), Gaps = 19/338 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 21  YQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 79

Query: 80  IAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + PTRELA QV         G +L +L A          GGVS++ +   L+ G  ++V 
Sbjct: 80  LVPTRELAEQVLQSFIDYGKGLDLRFLAA---------YGGVSINPQMMKLRKGVDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +
Sbjct: 131 TPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATFT 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A    +D + ++++  N   S I    V V   ++ +  ++++  +  ++A+VF
Sbjct: 191 DDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAENNWRHALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ + TDVAARG+D+
Sbjct: 251 VKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVVTDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 311 DDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 462

 Score =  183 bits (465), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 203/370 (54%), Gaps = 14/370 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I  A+SE GY+  T +Q   +   L+ K+++ +AQTGSGKT  F L +   L  +E  R 
Sbjct: 12  ILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPILEMLARSETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
             A A   L + PTRELAVQV + +E +Y K   + ++ I GGV    +++ L +G  IV
Sbjct: 72  KRARA---LILTPTRELAVQVCKSIE-VYGKNLNLKSIAIYGGVDYAPQKQALIDGVDIV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P++R+ L+FSAT
Sbjct: 128 VATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEERQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LAK+   +A++++   E     +ID   + V    +   + +++  +  + A+
Sbjct: 188 LSRQVRELAKDTVSNAIQLSFNKERAGKPNIDQWLITVDKDKKSALLSHLINENNWQQAL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+    +    L +   +   +    +Q  R   L   + G+ +  I+T V+ARGI
Sbjct: 248 IFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREKILADFKTGKIKYLISTGVSARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQRRAERLFR 361
           D+  L LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++       ++RR + L  
Sbjct: 308 DIDVLPLVINYDLPFPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCMIERRLDHLI- 366

Query: 362 EANVSVVWEP 371
           E  V   +EP
Sbjct: 367 ERKVVEGFEP 376


>gi|302524816|ref|ZP_07277158.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
 gi|302433711|gb|EFL05527.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
          Length = 511

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 184/361 (50%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + +AL+ +G      +Q A L   L  +DVL   +TGSGKT  F L + + L A 
Sbjct: 8   GLPKPLVDALAAQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPVLARLAAG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P     AL +APTRELA Q+   +  L    G+      GGVS + +   L++G 
Sbjct: 68  PTRRRPGRP-RALILAPTRELATQIEAAIVPLARPLGLKATTIFGGVSANPQITRLRDGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DH+R     +  ++  VLDEAD M DLGF  ++  I+ ++P++ + L+F
Sbjct: 127 DIVVACPGRLADHMRTGEAKLDKIEITVLDEADHMADLGFLPEVRRIMAATPERGQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK +  D +  ++ S     S + +  + +  + R   +V++    G  
Sbjct: 187 SATLDGGIDVLAKRFMNDPMLHSVDSAQSPVSTMTHHVLHLEETHRLPVLVDLTAAPG-- 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      T+ L       V L G L Q  R+  L+    G A+  +ATD+AA
Sbjct: 245 RTLVFTRTKHRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++          L R+A +
Sbjct: 305 RGIHVDDVTLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDEQVADVRALTRKAGI 364

Query: 366 S 366
           S
Sbjct: 365 S 365


>gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 1007

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 27/373 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + + + GY   T +Q   +   L+ +DV+  A+TGSGKT AF + L   ++ + 
Sbjct: 589 FPTEILDVIMKIGYTEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLCFVMIKR 648

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P A+ +APTRELA Q+  E        GV     IGG+S   +   L+ G  
Sbjct: 649 EE-DVDQGPYAVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKLRMGCE 707

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--------- 177
           IV+ TPGRL D +  + L ++    V+LDEAD+MLD+GF   ++ IL   P         
Sbjct: 708 IVIATPGRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNLKPDTE 767

Query: 178 ----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                           K R+ +MF+AT+S A+  LA+NY +    V I +  +    ++ 
Sbjct: 768 EAEDEKALLNNFYSKKKFRQTVMFTATMSSAVERLARNYLRRPAVVYIGAIGKPTERVEQ 827

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +V+ S++   +V IL        I+F + +       + L +  F   AL G   Q 
Sbjct: 828 IVYMVSESEKRKKLVQILEKGIEPPIIIFVNQKKGADLLARGLEKLGFNPCALHGGKGQD 887

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R  AL  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRAG+ 
Sbjct: 888 ARDYALASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKS 947

Query: 342 GMSV-FVIPQNMQ 353
           G ++ F+  ++ Q
Sbjct: 948 GKAITFLTKEDNQ 960


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 173/339 (51%), Gaps = 1/339 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I  +L E G+   T +Q   +   L+  DVL  AQTG+GKT AF + +   L   +
Sbjct: 8   ISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPVLHKLQQYH 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +       + + PTRELAVQ+    E L   T + +    GGV    + + L  G  
Sbjct: 68  PRKTKGEV-RCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQLKKLAQGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGR+ D I    +++S    ++LDEAD MLDLGF  DI  +L   P++ + L FS
Sbjct: 127 VLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPRRHQTLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  LA +   + +R+ I+ ++    ++ +    V + D+   +  +++      
Sbjct: 187 ATIDEDIKDLAYSVVNNPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERLVKEFPENK 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R    +     + + + G   Q  R   +   + G  ++ I TDV AR
Sbjct: 247 ILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLLITTDVNAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+PD+E V++ +L   PEN +HR GRTGR  +KG +V
Sbjct: 307 GIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAV 345


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 180/339 (53%), Gaps = 8/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT +F L +   L+ +      FS 
Sbjct: 39  VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPILQQLMVDGVAASCFSE 98

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GGVS   + R++  G +++ GT
Sbjct: 99  LQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGYQIREILKGCNVLCGT 158

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RRMLMFSA 187
           PGRL D I    + +S L+ +VLDEAD MLD+GF  D+  ++ S    PK+  + LMFSA
Sbjct: 159 PGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENHQTLMFSA 218

Query: 188 TISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T    I  +A ++ K D + + +       +D++   V V    + + ++  L+  G + 
Sbjct: 219 TFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQVTKFSKRDQLLEFLKTTGTER 278

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L +      ++ G+  Q ER  AL   R G+  V +AT VAAR
Sbjct: 279 TMVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADFRSGKCPVLVATSVAAR 338

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+PD++ V++ +L +N +  +HR GRTGR G  G +V
Sbjct: 339 GLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAV 377


>gi|58263404|ref|XP_569112.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108568|ref|XP_777235.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687159|sp|Q5KMN6|HAS1_CRYNE RecName: Full=ATP-dependent RNA helicase HAS1
 gi|50259920|gb|EAL22588.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223762|gb|AAW41805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 607

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 201/357 (56%), Gaps = 16/357 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+      A+   G+  +T VQ   + P L  KDVL +A+TGSGKT+AF   + S  L  
Sbjct: 135 NLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAF--LIPSVELLS 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + I+PTRELA+Q   V +EL   +++T     V +GG +   E   L 
Sbjct: 193 TLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQT---FGVLMGGANRKAEADKLV 249

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G +++V TPGRL DH++  KG    +LKA+V+DEAD +L++GF ++++ I+   P + R
Sbjct: 250 KGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENR 309

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDY--RAVLVALSD-RDNAIV 236
           + ++FSAT +  +T LA+ + +   + +N+  E ++ S  D   +  +V  SD R   + 
Sbjct: 310 QSMLFSATQTTKVTDLARISLRPGPLYINV-DETKEASTADMLEQGYVVCESDQRFMLLF 368

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      +  A 
Sbjct: 369 TFLKKNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAPAG 428

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           + + TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S +F++P  +
Sbjct: 429 ILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSEL 485


>gi|254387115|ref|ZP_05002388.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
 gi|194345933|gb|EDX26899.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
          Length = 524

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 189/365 (51%), Gaps = 6/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 15  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 74

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R  P   PLAL + PTRELA QV   L        + +A  +GG+S++R+   L
Sbjct: 75  --TAGHRAQPKQ-PLALVLVPTRELAQQVTDALAPYATSVNLRIATVVGGMSINRQSGAL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +L     + +
Sbjct: 132 RRGAEVLVATPGRLKDLIDRGDADLSQVAITVLDEADQMTDMGFMPQVTALLKQVRPEGQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       + +++  VL  + + D   V     
Sbjct: 192 TMLFSATLDKNIDKLVKMFLHDPVGHSVDPSAGAVTTMEHH-VLYVMDETDKKAVATRIA 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V R  K L     +   L G  SQ +R+  L   + G     +AT
Sbjct: 251 ARDGRVIMFVDTKRGVDRMVKKLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 311 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQRREMTRLMS 370

Query: 362 EANVS 366
           +A +S
Sbjct: 371 DAGIS 375


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  183 bits (465), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 187/363 (51%), Gaps = 15/363 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + + +++ G+   T +Q       L+ +DV+  A+TGSGKT+A+ L  A   +  
Sbjct: 106 GLPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAY-LLPAIIHVNA 164

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G 
Sbjct: 165 QPILAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRDLQKGV 224

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 225 EIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYW 284

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVNI 238
           SAT    +  LA+ +  +  +V I S +       RQH +I      V+ + + N +V +
Sbjct: 285 SATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEI------VSENQKYNRLVKL 338

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L         ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +
Sbjct: 339 LEDIMDGGRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPI 398

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+
Sbjct: 399 MTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAK 458

Query: 358 RLF 360
            L 
Sbjct: 459 ELI 461


>gi|167720206|ref|ZP_02403442.1| ATP-dependent RNA helicase [Burkholderia pseudomallei DM98]
          Length = 347

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 20/318 (6%)

Query: 68  RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           R  P + P  L + PTRELA+QV       G+ L  L   +       +GGV+  ++   
Sbjct: 5   RPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ILGGVAYGQQLML 58

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DDI+ I+ ++P  R
Sbjct: 59  LAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATR 118

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           + ++FSAT+   I +L     KD  R+ I  +    S+I      V   D +D  + ++L
Sbjct: 119 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 178

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R      AI+F +T+    +    LA+  FQ  AL G+L Q  R+  ++ +R+ R RV +
Sbjct: 179 RDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLV 238

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V ++    Q   +R 
Sbjct: 239 ATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRI 298

Query: 357 ERLFR---EANVSVVWEP 371
           ER  R     NV   +EP
Sbjct: 299 ERFVRAPLPVNVVEGFEP 316


>gi|160380652|sp|A7A0P8|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 246 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 300

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 301 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 358

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 359 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 418

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 419 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 478

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 479 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 539 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593


>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
 gi|1706521|sp|P32892|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
 gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
 gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
          Length = 752

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 244 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 298

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 299 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 356

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 357 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 416

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 417 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 476

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 477 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 536

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 537 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
           N+P+ + + + + GY   + +Q A +   L+ +D++  A TGSGKT AF L L    S L
Sbjct: 287 NLPRRLLDIVHDVGYDEPSPIQRASIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISEL 346

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              ND  +    P AL +APTREL  Q+  E        G  V   +GG S+  +   L+
Sbjct: 347 PPLND-VNKNDGPYALILAPTRELVQQIENEARKFATPLGFTVVSIVGGHSLEEQAYALR 405

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I+V TPGRL D +  + L  +    +++DEAD M+D GF + +  ILD+ P     
Sbjct: 406 NGAEIIVATPGRLVDCLERRLLVFTQCCYIIMDEADRMIDQGFEEPLTKILDALPVTNEK 465

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+ P +  +AK Y +    V I +      
Sbjct: 466 PDTEEAENPQLMKKYLGGKDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVD 525

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   +A  D R N +  IL     K   IVF + + +     K +    F    L 
Sbjct: 526 TVEQRVEFIAGEDKRKNRLREILNSGQFKPPIIVFVNIKRNCEMVAKDIKSWGFSTTTLH 585

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  +L  +R+G++ + +ATD+A RGID+PD+ LV++  + S+ E+  HR GRT
Sbjct: 586 GSKTQEQREASLASVRNGQSSILVATDLAGRGIDVPDVSLVVNFNMPSSIESYTHRIGRT 645

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 646 GRAGKSGVAITFL 658


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 188/357 (52%), Gaps = 8/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + + G+ + T +Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 138 FPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINHQ 196

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R      P+AL +APTRELA Q+ +++   + ++  +   C+ GG     +  DL +G 
Sbjct: 197 PRLLRGDGPIALVLAPTRELAQQI-QQVATDFGRSSKIRNTCVFGGAPKGPQANDLMDGV 255

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 256 EIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 315

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           SAT    +  LA  + KD +++N+ S     +    + + V    +++  +  +L+   A
Sbjct: 316 SATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLLKEIMA 375

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+  V   T+ +    +  V + G+ SQQER   LQ  R G+A + +AT
Sbjct: 376 EKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAPILVAT 435

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           DVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +  F  P N  + A+
Sbjct: 436 DVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKAAD 492


>gi|260577895|ref|ZP_05845826.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603989|gb|EEW17235.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 458

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 186/358 (51%), Gaps = 20/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+     +  ++QE  L   L+  DV+  A+TG GKT+ FG+ +   +  +    +
Sbjct: 33  ITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLDRVFDDATVTA 92

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLY-----------------AKT-GVVVAVCIGGV 112
           P   P AL + PTREL +QV  +L                     +KT  + V    GGV
Sbjct: 93  PDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRALQVHAVYGGV 152

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              ++   L  G  +VVGTPGRL D  +   L ++ ++ VVLDEADEMLD GF DD+  I
Sbjct: 153 RFDKQTTALARGVDVVVGTPGRLLDLAQQGHLQLNTVEIVVLDEADEMLDQGFLDDVRSI 212

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--D 230
           +  +  +R+ ++FSAT+   I  L + + +  V +   S   + +    + V+      D
Sbjct: 213 ITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADSAATEATHESTKQVVFQSHKLD 272

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R +A+  IL+  G   +IVF  T+   +   + LA+  F+V A+ G++ Q +R  +L   
Sbjct: 273 RLSALARILQSPGRGRSIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLDEF 332

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R     V +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG  G +V +I
Sbjct: 333 RRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLI 390


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 187/343 (54%), Gaps = 13/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G    T VQ  ++   + + DV+  ++TGSGKT+AF L +   +    D  S +
Sbjct: 14  DELKKNGITTPTKVQVNVIPEIINKNDVIGKSKTGSGKTLAFLLPILQII----DSNSKS 69

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  L L+  PTRELA+Q+  E  ++     G++ A   GG  V  + + L  G ++++ T
Sbjct: 70  TEVLILS--PTRELAIQITEEANKFNINDIGILAAY--GGKDVGSQLKKLNKGINLIIAT 125

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH+  K +N+S L  VV+DEAD+ML +GFR++IE I+  +PKK + L FSATI  
Sbjct: 126 PGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQTLCFSATIDS 185

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIV 249
            +  LA  Y  +   ++I +EN +    + +  +V  +DR   +A+V IL       +I+
Sbjct: 186 KVKKLAYRYMNNPTIIDI-TENEESEIPNIKQEVVKTTDRWKVDALVKILEEDNPFMSII 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+         LA    +   +  ++ Q +R   ++  RD   +  IATDVA+RGID
Sbjct: 245 FCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLIATDVASRGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           +  +  + + +   + E+ +HR GRT RAG  G +  +  P+N
Sbjct: 305 VTGVTHIYNYDAPESVESYIHRIGRTARAGDSGYTCLITDPKN 347


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 22/354 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L   + + +       
Sbjct: 24  ALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI----------GGVSVHRERR 119
           AP AL + PTREL +QV  +L    ++L A      A  +          GG     +  
Sbjct: 84  APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIE 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  
Sbjct: 144 ALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAD 203

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           R+ ++FSAT+   I TLA+ +  +   +R      +  H   +   YRA  +   D+   
Sbjct: 204 RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL---DKVEL 260

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G 
Sbjct: 261 VSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 320

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 321 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + VA   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA    +  +   ++++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRAD--DIEHKTAMLIHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L +       L GE+ Q +R+ A++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLV 352


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 187/348 (53%), Gaps = 11/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRF 69
           + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      F
Sbjct: 209 KTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASSF 268

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S    P A+ +APTREL  Q+  E       T V   V  GGVS   + R+L  G +++ 
Sbjct: 269 SELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGYQIRELCRGCNVLC 328

Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLM 184
           GTPGRL D I RGK + +S L+ +VLDEAD MLD+GF   +  ++ S    S + R+ LM
Sbjct: 329 GTPGRLMDVIGRGK-VGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSPGMPSKENRQTLM 387

Query: 185 FSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  +  ++ K D + + +       +D++   V V    +   ++++L+  G
Sbjct: 388 FSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLLDLLKTTG 447

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT V
Sbjct: 448 TERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSV 507

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V F  P+
Sbjct: 508 AARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYDPE 555


>gi|239945142|ref|ZP_04697079.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|239991603|ref|ZP_04712267.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 11379]
          Length = 481

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  ALS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 59  DMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 118

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 119 --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 176 EVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 234

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 235 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHRATTEIAAREG- 293

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 294 -RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 352

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+   A 
Sbjct: 353 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPGQRREMTRVMTAAG 412

Query: 365 V 365
           +
Sbjct: 413 I 413


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 188/359 (52%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 137 FPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 196 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 254

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 255 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 314

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA+++  D ++VNI S +    H       ++     RD    ++ R   
Sbjct: 315 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIME 374

Query: 243 GAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             KNA  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 375 ENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 434

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 435 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 493


>gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
 gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
          Length = 828

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 29/372 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P++I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  L +
Sbjct: 409 PEII-DIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPK 467

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G
Sbjct: 468 IERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRLRLG 527

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P       
Sbjct: 528 CEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPD 587

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  +     
Sbjct: 588 TEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMGKPTERT 647

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           +    ++  +D+   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 648 EQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKG 707

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTGRAG
Sbjct: 708 QEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTGRAG 767

Query: 340 RKGMSVFVIPQN 351
           + G ++  + ++
Sbjct: 768 KTGCAISFVTKD 779


>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 598

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 180/346 (52%), Gaps = 4/346 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+   I +A+ E GY N T +Q   +   L   D+L  AQTG+GKT AF L +   L   
Sbjct: 7   NLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQRLSQG 66

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               ++F       AL + PTRELA QV   +        +   V  GGV +  +   ++
Sbjct: 67  QVPRNKFG-GKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQIDRIK 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK ++ 
Sbjct: 126 KGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPKDKQS 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I+  +
Sbjct: 186 LLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHIINEN 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +ATD
Sbjct: 246 NWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELRALVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++
Sbjct: 306 IAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLV 351


>gi|326385724|ref|ZP_08207353.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209703|gb|EGD60491.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 487

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 181/346 (52%), Gaps = 6/346 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  AL+ +GY + T +Q   +   L  +D+L  AQTG+GKT AF L     L A+   
Sbjct: 11  EPILRALATKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPSLHRLAADPKP 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PAS  + L ++PTRELA Q+   +        + V    GGV + ++ + L  G  I+
Sbjct: 71  KKPASCRM-LVLSPTRELAAQIAENMRGYARNLNLQVDCVFGGVPIGKQAKRLVPGTDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  + L +  ++  VLDEAD+M+DLGF   ++ +    P KR+ L FSAT
Sbjct: 130 VATPGRLLDLIDSRALTLGRVEIFVLDEADQMMDLGFIHSLKRVAALLPAKRQSLFFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA- 247
           +  +I  L + +  + VRV +A ++     ++     +   ++   +   +R   A  + 
Sbjct: 190 MPKSIEDLGRQFIHNPVRVEVAPQSTTAERVEQYVTFLNQMEKQALLTLRIRAMLADKSL 249

Query: 248 ---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R  + L     +  A+ G  +Q +R+ AL+  R G   + +ATD+A
Sbjct: 250 DRGIVFTRTKHGADRVARHLGVAGIEARAIHGNKTQAQRTAALEAFRQGSCPILVATDIA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           ARGID+  +  V + EL + PE  +HR GRT RAG  G+++ F  P
Sbjct: 310 ARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAP 355


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + VA   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHMEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA    +  +   ++++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRAD--DIEHKTAMLIHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L +       L GE+ Q +R+ A++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLV 352


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++ +  S 
Sbjct: 16  LQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSI 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  -RALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I 
Sbjct: 135 LLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA     D + + ++  N   + +    V V    + +   ++LR    K  +VF  TR
Sbjct: 195 MLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKVDLFCHLLRKQRWKQVLVFAKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+D+ DL 
Sbjct: 255 NGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQVLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LV++ +L    E+ +HR GRTGRAG KG ++ ++
Sbjct: 315 LVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLV 348


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 178/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 16  LQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT S  I 
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFSDEIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF  TR
Sbjct: 195 KMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+ DL 
Sbjct: 255 NGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|21223065|ref|NP_628844.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7321275|emb|CAB82053.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 473

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 125/367 (34%), Positives = 187/367 (50%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 51  DMPAELLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ G 
Sbjct: 108 AGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASALRGGV 167

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 168 EVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 226

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 227 FSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEIAARDG- 285

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T  L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 286 -RVLMFLDTKHAVDRLTDHLLNSGVRAAALHGGKSQSQRTRTLAQFKTGHVTVLVATNVA 344

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 345 ARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVTPNQRRAMTRLMTTAG 404

Query: 365 VSVVWEP 371
           +     P
Sbjct: 405 IVPQTTP 411


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 186/361 (51%), Gaps = 17/361 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------- 74
           T VQ+  +   +  +D++  AQTGSGKT  F   +      +     PA +         
Sbjct: 222 TPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQSGGGYRQRKA 281

Query: 75  -PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TPG
Sbjct: 282 YPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPG 341

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATI 189
           RL D I    +++ ++K +VLDEAD MLD+GF   I  I+      +  +R+ LMFSAT 
Sbjct: 342 RLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQTLMFSATF 401

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA+++  D V +++        +I  +   V   D+ + +++IL  H     ++
Sbjct: 402 PRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLI 461

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+      +  L    F   ++ G+ +Q+ER  AL++ R+G+  + +AT VAARG+D
Sbjct: 462 FVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLD 521

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVS 366
           +P++  VI+ +L ++ ++ +HR GRTGRAG  G++        + + R    L +EAN  
Sbjct: 522 IPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELLDLLKEANQE 581

Query: 367 V 367
           V
Sbjct: 582 V 582


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 114/333 (34%), Positives = 179/333 (53%), Gaps = 6/333 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G    T VQE  +   L+ +DV+  AQTG GKT++F + L  T + E   F  A
Sbjct: 46  ERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLF-TKITEVKTFVQA 104

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L ++PTRELA Q   E++ L   T V V    GG     ERR L N A+++VGTP
Sbjct: 105 -----LILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGNKANVLVGTP 159

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R    ++  +  +VLDE DEML  GF +DIE +L   P+  + +M SAT+   
Sbjct: 160 GRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMMCSATLDEE 219

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L K   K+   ++I  +    S I    + V+   ++ A+  I+        +VFC 
Sbjct: 220 VRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEALQTIIDRCNPFLMLVFCK 279

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           ++         L    F    L G++SQQ+R  A++  R  + ++ +A+D+AARG+D+  
Sbjct: 280 SKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVASDIAARGLDVEG 339

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V++ ++  +P+  +HR GRTGRAG +G ++
Sbjct: 340 VTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAI 372


>gi|167919550|ref|ZP_02506641.1| ATP-dependent RNA helicase [Burkholderia pseudomallei BCC215]
          Length = 390

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 118/318 (37%), Positives = 173/318 (54%), Gaps = 20/318 (6%)

Query: 68  RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           R  P + P  L + PTRELA+QV       G+ L  L   +       +GGV+  ++   
Sbjct: 5   RPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ILGGVAYGQQLML 58

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DDI+ I+ ++P  R
Sbjct: 59  LAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATR 118

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           + ++FSAT+   I +L     KD  R+ I  +    S+I      V   D +D  + ++L
Sbjct: 119 QTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLL 178

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R      AI+F +T+    +    LA+  FQ  AL G+L Q  R+  ++ +R+ R RV +
Sbjct: 179 RDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLV 238

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRA 356
           ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V ++    Q   +R 
Sbjct: 239 ATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRI 298

Query: 357 ERLFR---EANVSVVWEP 371
           ER  R     NV   +EP
Sbjct: 299 ERFVRAPLPVNVVEGFEP 316


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 294 NLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 353

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 354 GVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 413

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 414 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 473

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 474 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 533

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 534 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRSGKCPV 593

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 594 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 653

Query: 357 ERLFR 361
           + L +
Sbjct: 654 QPLIK 658


>gi|255539651|ref|XP_002510890.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223550005|gb|EEF51492.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 690

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 204/398 (51%), Gaps = 23/398 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           I + + E L  +G  +L  +Q    +  L   D++  A+TG GKT+AF L +  ++    
Sbjct: 112 ISESLREKLKSKGIQSLFPIQAMTFDDILDGSDLVGRARTGQGKTLAFVLPILESITNGH 171

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E+ +      P  L + PTRELA QV  + +      G+      GG S H +   L+
Sbjct: 172 AKESRKTGYGRPPSVLVLLPTRELASQVFDDFKVYGESLGLTSCCLYGGASYHPQEMSLK 231

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  IVVGTPGR+ DHI    +N+S+LK  VLDEADEML +GF +D+E IL       K 
Sbjct: 232 RGVDIVVGTPGRVKDHIERGNINLSYLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKV 291

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDR--DNAIVN 237
           + L+FSAT+   +  ++  + K + + +++    +  +  + R +++  S       I +
Sbjct: 292 QTLLFSATLPEWVKQISSRFLKASKKTIDLVGNEKMKASTNVRHIILPCSASAIPQVIPD 351

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R Y      I+F   R S +     LA  L    AL GE+ Q +R   L   R G+  
Sbjct: 352 IIRCYSSGGRTIIFTEKRESANE----LAGLLHGARALHGEIQQSQREVTLSGFRSGKFL 407

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +      RR+
Sbjct: 408 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD---PRRS 464

Query: 357 E--RLFREANVS----VVWEPAPSVEAIRERDAQRILQ 388
              ++ RE+ V        +PA   +A+    A++I Q
Sbjct: 465 NISKIERESGVKFEHITAPQPADIAQAVGAVAAEKITQ 502


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 390 ALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIM-DQRALEEGE 448

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 449 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 508

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 509 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 568

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K + I+
Sbjct: 569 RAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVII 628

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 629 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 688

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A
Sbjct: 689 VKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYA 735


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 10/368 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P  + I  ALS++GY   + +Q   +   L   D+L  AQTG+GKT AF L L   
Sbjct: 6   FQELPLAEPIQRALSDKGYTTPSPIQARAIPVLLEGGDLLACAQTGTGKTAAFALPLLHG 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + AE  R         L + PTRELAVQV    E           +  GGVS   + + L
Sbjct: 66  I-AERPRKPFRRGVRHLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKTL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  ++V  PGRL D +    +++S ++  +LDEAD MLD+GF  DI  I    PKKR+
Sbjct: 125 FQGVDVLVACPGRLIDLMDQGHVDLSQVETFILDEADRMLDMGFIRDIRKIAAKLPKKRQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-- 239
            L+FSAT++P IT L          + IA +      +D     +    +   ++ +L  
Sbjct: 185 TLLFSATMAPEITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKAKPKLLLEMLHR 244

Query: 240 RYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           R+    N  ++VF  T+       K L     +  A+ G  SQ  R   L+  R G   +
Sbjct: 245 RFDEQPNELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRGEIDI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQR 354
            +ATDVAARGID+ ++ LVI+ +L    +  +HR GRT RAG  G +V    +    + R
Sbjct: 305 LVATDVAARGIDVKNITLVINFDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEVALLR 364

Query: 355 RAERLFRE 362
           + ERL ++
Sbjct: 365 QIERLIKK 372


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 5/347 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 ALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIM-DQRALEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A
Sbjct: 685 VKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYA 731


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score =  183 bits (464), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 186/347 (53%), Gaps = 18/347 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---------APLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S    +     P S          P  L +APTREL  
Sbjct: 225 RDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTTLVMAPTRELVS 284

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNIS 147
           Q+  E +    ++ V   V  GG  + ++ R++  G  ++V TPGRL D + RGK ++++
Sbjct: 285 QIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGK-VSLA 343

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++ +VLDEAD MLD+GF   I +I+D     + K R+ LMFSAT    I  LA+++ KD
Sbjct: 344 NIRYLVLDEADRMLDMGFEPQIRYIVDECDMPAVKDRQTLMFSATFPRDIQMLARDFLKD 403

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            + +++        +I  + + V   ++ + I+++L  +     IVF  T+         
Sbjct: 404 YIFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMADNLADY 463

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +  F   A+ G+ SQ ER  AL   ++G A + +AT VAARG+D+P++  VI+ +L S
Sbjct: 464 LYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPS 523

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
           + ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 524 DIDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGLVELLSEANQEV 570


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 174/342 (50%), Gaps = 6/342 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E +    Y   T VQ+  +      +D++  AQTGSGKT AF + + S +     + 
Sbjct: 207 IITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLSNIFHNPGKI 266

Query: 70  ----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  + PLAL ++PTREL  Q+ +E      ++ V   V  GG  V  + RDL  G 
Sbjct: 267 PRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDLSRGC 326

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRML 183
           H++V TPGRL D +    + +   + + LDEAD MLD+GF   I  I++    P  R+ L
Sbjct: 327 HLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPSDRQTL 386

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA ++  + + + +       ++I  R   V  +++   +  +L    
Sbjct: 387 MFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELLENGQ 446

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+         L E  +Q   + G+ +QQER  A+ + + G+  + +AT V
Sbjct: 447 EMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILVATAV 506

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P++  VI+ +L S  +  +HR GRTGRAG  G + 
Sbjct: 507 AARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWAT 548


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 183/354 (51%), Gaps = 22/354 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L   + + +       
Sbjct: 24  ALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQRITSGDGTRPLTG 83

Query: 74  APLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCI----------GGVSVHRERR 119
           AP AL + PTREL +QV  +L    ++L A      A  +          GG     +  
Sbjct: 84  APRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIE 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  
Sbjct: 144 ALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAD 203

Query: 180 RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           R+ ++FSAT+   I TLA+ +  +   +R      +  H   +   YRA  +   D+   
Sbjct: 204 RQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVYRAHAL---DKVEL 260

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G 
Sbjct: 261 VSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAREKALKAFRTGG 320

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++
Sbjct: 321 IDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLV 374


>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 179/337 (53%), Gaps = 5/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ + GY   T +Q   +   L  +D++  AQTG+GKT +F L +   L     R   A
Sbjct: 35  KSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMIDVLAHGRRR---A 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E       + +A+ IGGV +  + + L +G  +++ TP
Sbjct: 92  LMPRSLILEPTRELAAQVAENFEKYGKNHDLRMALLIGGVQMGDQVKALSDGVDVLIATP 151

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D   RGK L ++  + +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P
Sbjct: 152 GRLMDLFERGKIL-LTGCELLVIDEADRMLDMGFIPDIESICSKLPTTRQTLLFSATMPP 210

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  +  +   + +A     + +I    V  A  D+   + ++LR      AIVF 
Sbjct: 211 PIKKLADRFLSNPKYIEVARPASANINIVQHKVACASRDKRKVLRHLLRTDNVSTAIVFA 270

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +V    K L  H F    + G++ Q +R   LQ  +DG+  +  A+DVAARG+D+ 
Sbjct: 271 NRKTTVRDLAKSLKRHGFAAGEIHGDMDQPQRLAELQRFKDGQINILCASDVAARGLDVK 330

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  V + +   +P++ +HR GRTGR G  G +  ++
Sbjct: 331 GVSHVFNFDTPWHPDDYVHRIGRTGRGGASGRAFTLV 367


>gi|325287731|ref|YP_004263521.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323185|gb|ADY30650.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 445

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 174/313 (55%), Gaps = 9/313 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EW 96
           KD +  A+TG+GKT AFGL L   +  E+          A+ + PTREL  Q+   L  +
Sbjct: 42  KDFVGLAKTGTGKTAAFGLPLIQLINTESANIQ------AVIVVPTRELGQQIYSNLVSF 95

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
                 V +A   GG  +  +   L+   HIV+ TPGRL D ++   + I+  K +VLDE
Sbjct: 96  ASHMPAVSIASVCGGTPIKPQIERLKENTHIVIATPGRLIDLLKRNAITINSAKYLVLDE 155

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQ 215
           ADEM+    +D ++ I+ + PK +R ++F+AT+   I  + +NY  K   +V++  E   
Sbjct: 156 ADEMVT-SLKDGLDTIVAALPKDKRTILFTATMPGTIKQIVQNYLSKHVTQVSVNMETVG 214

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           ++ ID++ V+V   ++   +++ L     +  I+FC T+A+V++  K LA + F   AL 
Sbjct: 215 NTSIDHQYVVVEPIEKLEVLMHFLNSKEGQRGIIFCKTKAAVNKLAKNLAINKFSSGALH 274

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G L+Q  R   +   R+G  ++ +ATD+AARG+D+ ++  V++  L    E  +HRSGRT
Sbjct: 275 GSLTQPIRDRIMGQFREGHIKILVATDLAARGLDVKEITYVVNYHLPDVYETYVHRSGRT 334

Query: 336 GRAGRKGMSVFVI 348
            RAG  G S+ ++
Sbjct: 335 ARAGADGFSLTIL 347


>gi|284038210|ref|YP_003388140.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817503|gb|ADB39341.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 441

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 181/347 (52%), Gaps = 9/347 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ   + L+  G   L  +QEA LN   ++ D  + A TGSGKTV F L + + L ++  
Sbjct: 4   PQQQTQILTNLGISALNPMQEAALNAITQDNDTFLIAPTGSGKTVGFLLPILNLLKSDQK 63

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                ++   L +AP+RELA+Q+  E  W    TG  V VC GG  V  E ++L N   +
Sbjct: 64  -----TSVQCLVLAPSRELAIQI--EQVWKKMATGFKVNVCYGGHPVETEIKNLSNPPAL 116

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DHI  +  ++  +  +VLDE D+ L LGF D++EFI+      R+ ++ SA
Sbjct: 117 LIGTPGRIADHITRRSFSLDGIHTLVLDEFDKSLALGFHDEMEFIVRGLRNLRKRVLVSA 176

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T   +I    +        +   +E  + + +  + V     D+ + + ++L    +++A
Sbjct: 177 TSGISIPAFIR--LNMPTTLTFTAEKSEETGLTTKVVYAQSKDKIDTLFDLLCALDSESA 234

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F + R +  R +++LAE     +   G + Q +R  AL   R+G  R  + TD+AARG
Sbjct: 235 LIFLNHREAAERTSELLAERGIHSLVYHGGMEQVDRERALIQFRNGSTRYLVTTDLAARG 294

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+P+++ VIH  L        HR+GRT R    G +  ++  +  R
Sbjct: 295 LDIPEMKYVIHYHLPLQAHEFTHRNGRTARMHASGTAYVILSPDETR 341


>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
          Length = 751

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 197/355 (55%), Gaps = 18/355 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 243 KGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 297

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+++      +G+   + +GG+++ ++ + L++   I
Sbjct: 298 KIASTRVIVLLPTRELAIQVADVGKQIARFV--SGITFGLAVGGLNLRQQEQMLKSRPDI 355

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L+FS
Sbjct: 356 VIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNLLFS 415

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY--- 241
           AT++  I +L     K  VR+ I    +  + +    V +   D  +   + N++R    
Sbjct: 416 ATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDP 475

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V I T
Sbjct: 476 TGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICT 535

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 536 DLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 590


>gi|223590136|sp|A5DF03|PRP28_PICGU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|190345810|gb|EDK37756.2| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 575

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 192/377 (50%), Gaps = 38/377 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           IP  +   + + GY   T +Q A +   L  +DV+  A+TGSGKT+AF + L S L A  
Sbjct: 157 IPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAID 216

Query: 65  ------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 E+ + S  +  L L +APTRELA+Q+ +E +   +  G  V   IGG       
Sbjct: 217 KDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETV 276

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
           + +Q+GAHIVV TPGRL D      +++S    + +DEAD M+D+GF   ++ IL   P 
Sbjct: 277 KSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSILSFLPS 336

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          K R  LMF+ATISP I  + K+Y +    + I        +I+ +
Sbjct: 337 TSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVDNINQK 396

Query: 223 AVLVA---------LSDRDNAIVNILRYHGAKNA----IVFCSTRASVSRFTKVLA-EHL 268
              +           + R N +++ LR H  +      I+F + + +    +  L+ +++
Sbjct: 397 FEYLGDNVDSQEELNAPRTNKMISALRQHIRETEQPLIIIFANFKRTCELLSVELSNQNV 456

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
              + + G  SQ+ R +A+   R+ +  V IATDVAARGID+P++ LV++  +    +  
Sbjct: 457 GSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEY 516

Query: 329 LHRSGRTGRAGRKGMSV 345
           +HR GRTGRAG+ G S+
Sbjct: 517 IHRIGRTGRAGKSGASL 533


>gi|150025027|ref|YP_001295853.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 444

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 187/352 (53%), Gaps = 15/352 (4%)

Query: 37  EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           + D +  A+TG+GKT AFGL L   +   N +        A+ + PTREL  Q+   LE 
Sbjct: 41  QDDFIGLAKTGTGKTAAFGLPLLQLINVNNAKIQ------AVILVPTRELGNQIFTNLES 94

Query: 97  L--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
              Y     + +VC GG+ +  +   LQ   HIVV TPGRL D I+   +NI  +  ++L
Sbjct: 95  FAKYLPEVSIASVC-GGIPIKPQIERLQQTTHIVVATPGRLIDLIKRGAINIKEINYLIL 153

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASEN 213
           DEADEM     ++ ++ I    PK R+  +FSAT+   +  L +NY  K   +V+ + E 
Sbjct: 154 DEADEMAT-ALKEGLDEIAIDLPKNRKTWLFSATMPGTVKQLVQNYMSKKVTQVSASMEI 212

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             +S I++  ++V   ++   +++ L     +  I+FC T+A+V++  K LA + F   A
Sbjct: 213 VGNSSINHEYIVVDPIEKLEVLMHFLTSKEGQRGIIFCKTKAAVNKLAKNLAINRFSSGA 272

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G L+Q  R   +   R G   + +ATD+AARGID+ ++  V++  L    E  +HRSG
Sbjct: 273 IHGSLTQPIRDRIMDQFRAGHINILVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSG 332

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP--APSVEAIRERDA 383
           RT RAG  G S+ ++ Q  +  AE    E  + + +E    P+ E+I E +A
Sbjct: 333 RTARAGANGFSLTILQQ--EEIAEIADFEKALGIKFEKFEKPNPESIEENNA 382


>gi|291448603|ref|ZP_06587993.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351550|gb|EFE78454.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 496

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  ALS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 74  DMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 133

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 134 --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGGA 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 191 EVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 249

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 250 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHRATTEIAAREG- 308

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 309 -RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 367

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+   A 
Sbjct: 368 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPGQRREMTRVMTAAG 427

Query: 365 V 365
           +
Sbjct: 428 I 428


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 183/343 (53%), Gaps = 14/343 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+ E  +   T +QE I+   LR K  +  +QTG+GKT A+ L +   +  + DR  
Sbjct: 15  IIEAIKELRFYKPTEIQERIIPIALRGKSAIGQSQTGTGKTHAYLLPIIEKI--DPDR-- 70

Query: 71  PASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              A  A+  APTRELA Q+  E+    ++  +   +     IGG    +    L+   H
Sbjct: 71  --KAVQAVITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGTDKQKAIEKLKTQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D IR + L +     +V+DEAD MLD+GF  D++ I    PK+ +ML+FS
Sbjct: 129 IVVGTPGRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQIAARMPKELQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           ATI   +    K Y ++   V++A +      I++  VLV L  RD    +  +L  +  
Sbjct: 189 ATIPEKLKPFLKKYMENPEYVHVAPKQVAAEKIEH--VLVPLRSRDKVKLLHEMLLAYNP 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +T+         L E   +V  L G+LS +ER   ++ +RD   +  +ATD+A
Sbjct: 247 YLAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRDLEFQYIVATDLA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARGID+  +  VI+ EL  + +  +HR+GRT RAG  GM+  +
Sbjct: 307 ARGIDIEGVSHVINYELPKDLQFYIHRAGRTARAGYTGMAATI 349


>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 403

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/338 (34%), Positives = 172/338 (50%), Gaps = 6/338 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   ++  G+   T +Q   L   L  KDVL  AQTG+GKT AF L +   L++      
Sbjct: 12  ITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPILQRLMS-----G 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL ++PTRELA Q  +    L   TG+  A   GGV    +   +++GA I+V 
Sbjct: 67  PRRRVRALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKIRSGAEIIVA 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            PGRL DH+  +  N+  ++ +VLDEAD M D+GF  DI  IL   P +R+ ++FSAT+ 
Sbjct: 127 CPGRLLDHLTDRSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQNMLFSATMP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L +    D   V I  E +  ++I      V    +   ++ IL        +VF
Sbjct: 187 ADIRALTEKLLVDPAEVRIDHE-KPSANISQALYPVEAQHKTPMLLKILEDEPDALTLVF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    +  + L    ++   L G LSQ +R  A+   R GR  + +ATD+AARGID+
Sbjct: 246 TKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTILVATDIAARGIDV 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ ++    EN  HR GRTGR  R G+++ +I
Sbjct: 306 ERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLI 343


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 176/335 (52%), Gaps = 1/335 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+       T +QE  +   L  +D+L  AQTG+GKT AF L L   L+    + +  +
Sbjct: 18  ALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLLHHLMTVGGKPTTRT 77

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++PTRELAVQ+   +  L   T +   V  GGVSV  + + L  G  I+V TPG
Sbjct: 78  TK-ALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQALARGVDILVATPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + +++   + ++LDEAD MLD+GF  D+  I+   P  R+ +MFSAT+   I
Sbjct: 137 RLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDDRQSMMFSATMPKPI 196

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L+K    +  +V++         I      V    + + +++ +  +     +VF  T
Sbjct: 197 EDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFVSKNDTGRIVVFTRT 256

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R T  L +   Q +A+ G  SQ  R  AL   +DG   V +ATD+ ARGI + D+
Sbjct: 257 KHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLVATDIVARGIHVDDI 316

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V++ +L   PE+ +HR GRT RAGR G ++ ++
Sbjct: 317 SHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALV 351


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 223 PVPEKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 282

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 283 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 342

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 343 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 522

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 523 VKGLMEILNEANQEV 537


>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
 gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
          Length = 771

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 185/347 (53%), Gaps = 5/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  G+   T +Q A +   L  KDV+ +A TGSGKT AF + +   LL  
Sbjct: 185 NLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLERLLY- 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ     + L A T + VA+ +GG+S+  +   L+   
Sbjct: 244 REKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATLRARP 303

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI       + +L  +VLDEAD ML  GF D++  I+ + PK R+ ++
Sbjct: 304 DIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSRQTML 363

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ +  +      +    V V      +R   +V +   
Sbjct: 364 FSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVALCTR 423

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  ++    +   V      +   L G+LSQ++R NALQ  RDG     +AT
Sbjct: 424 TFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDYLMAT 483

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+A+RG+D+  +E VI+ ++       LHR GRT RAG+KG SV ++
Sbjct: 484 DLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLV 530


>gi|167389793|ref|XP_001739087.1| ATP-dependent RNA helicase FAL1 [Entamoeba dispar SAW760]
 gi|165897365|gb|EDR24551.1| ATP-dependent RNA helicase FAL1, putative [Entamoeba dispar SAW760]
          Length = 384

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 185/352 (52%), Gaps = 10/352 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + ++GY   + +Q+  + P  + KDV+  +Q+G+GKT  F + +   + +        
Sbjct: 25  KGIYQQGYNKPSGIQQRGIVPITKGKDVIAQSQSGTGKTATFSIGILQNVESNKREVQ-- 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + I+PTRELA+Q  R +  L     + V  CIGG S   + + ++ G  ++ GTP
Sbjct: 83  ----VIIISPTRELAIQSERVISGLSQYMAIQVRGCIGGKSEKEDIKAIEKGCQVISGTP 138

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+   I+ + +N+ H+K +V+DEADEM + GF + I  I+   P KR++++ SAT++  
Sbjct: 139 GRIMGLIKKRVINVRHIKTLVIDEADEMFNKGFMEIIYDIIKYLPIKRQIVLCSATLTGD 198

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNAIVFC 251
           +  +        + + I        +I    + +   ++  + +  I        +++FC
Sbjct: 199 VIEIGTKIMNKPIEILIKRNEITVEEIKQYFIEIEKEEQKFDTLCEIYDSMTITQSVIFC 258

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +  V   T+ + +  F V+++  E+ QQER   + + R G  RV I TDV ARGID+ 
Sbjct: 259 NMKKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVLITTDVWARGIDVT 318

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
            + LVI+ ++  N E  +HR GR+GR GR G+++ FV+   M   R  ER +
Sbjct: 319 QISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMDNLRDLERYY 370


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 180 RDLMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 239

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 240 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 419

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 420 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 479

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 480 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 525


>gi|271502412|ref|YP_003335438.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345967|gb|ACZ78732.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 428

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 186/344 (54%), Gaps = 10/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF   LAST      
Sbjct: 18  PQVI-EALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAF---LASTFHYLLT 73

Query: 68  RFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +PA    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++
Sbjct: 74  HPAPAERQTNQPRALIMAPTRELAVQIHADAEALAKATGLRLGLAYGGDGYDKQLKVLED 133

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 134 GVDILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTNQRL 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++  
Sbjct: 194 NMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEE 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +AT
Sbjct: 254 EWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSLDILVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 314 DVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGVSI 357


>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
          Length = 736

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 194/354 (54%), Gaps = 14/354 (3%)

Query: 4   FENIPQVIGE--ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  P        L + G+V+LT++Q A + P +  KD+L +A+TGSGKT+AF + +   
Sbjct: 50  FEEFPFATKTKAGLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPILEC 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N  ++    P AL I+PTRELA Q+   L+ +  K      + IGG +V  E   +
Sbjct: 110 LHKHN--WNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEAHSV 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++ TPGRL  H+      ++++LK ++LDEAD +LD+GF+  ++ I+++ P +R
Sbjct: 168 -GKTNIIICTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPSER 226

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNI 238
           + L+FSAT + ++  LA+   +D   +++ SE +  +   +  R +   L D+ N + + 
Sbjct: 227 QTLLFSATQTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCELKDKLNVLFSF 286

Query: 239 LRYHGAKNAIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +R H     +VF S+   V    + F K+       ++ L G ++Q  R +  Q     +
Sbjct: 287 IRNHQKSKCLVFVSSCKQVQFIFAAFCKLRPGT--PMLHLHGRMNQLRRMSVYQEFCRKK 344

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATD+AARG+D P+++ V+  +   + +  +HR+GRT R    G S+ V+
Sbjct: 345 FAVLVATDIAARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGNSLLVL 398


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 189/348 (54%), Gaps = 10/348 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T +Q       ++ +D++  A+TGSGKT+  G  + + L  E  R +    P  L
Sbjct: 169 GFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTL--GYLIPAFLHLERHRNNSRLGPTVL 226

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA Q+  E    + ++  + + C+ GG     + RD++ GA IV+ TPGRL D
Sbjct: 227 VLAPTRELATQIQDECV-KFGRSSRITSTCVYGGAPKVPQLRDIERGADIVIATPGRLND 285

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LM++AT    +  +A
Sbjct: 286 FLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRRQTLMYTATWPKEVRKIA 345

Query: 198 KNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCST 253
            +   + V+VNI + +    +  I     +V   ++   +  ILR    G+K  I+FCST
Sbjct: 346 GDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEKQRRLEQILRSQEPGSK-IIIFCST 404

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      ++ L    F   A+ G+ SQ ER   L   R GR  + +ATDVAARG+D+ D+
Sbjct: 405 KRMCDTLSRNLGRD-FGAAAIHGDKSQSERDFVLSQFRTGRTPILVATDVAARGLDIKDI 463

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +V++ +  +  E+ +HR GRTGRAG  G++     +   + A+ L +
Sbjct: 464 RVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKELIK 511


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 180/356 (50%), Gaps = 3/356 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  A   +   
Sbjct: 102 FPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAY-LLPAIVHVNAQ 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G  
Sbjct: 161 PILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVE 220

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +S
Sbjct: 221 IIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  LA+ +  +  +V I SE+ +  H+   Y  ++      D  +  +      
Sbjct: 281 ATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDG 340

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 341 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 400

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+ L 
Sbjct: 401 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELI 456


>gi|115637407|ref|XP_796437.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
 gi|115949877|ref|XP_001190893.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
          Length = 603

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 192/389 (49%), Gaps = 9/389 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ I   L ++G    T +Q   L   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 168 KFPKSIIYGLKKKGITKPTPIQIQGLPVILEGRDMIGIAFTGSGKTLVFSLPIVMFALEQ 227

Query: 66  NDR--FSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
             R  F     P  L I P+RELA Q    +   ++ L A     +   +CIGGVSV  +
Sbjct: 228 EKRMPFIKNEGPYGLIICPSRELARQTHDGIMHFIKCLEADNQPTLRSMLCIGGVSVKEQ 287

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G HIVV TPGRL D +  K   +S  + + LDEAD M+DLGF +DI  IL    
Sbjct: 288 MDAVRSGVHIVVATPGRLIDMLNKKCFTLSVCRYLCLDEADRMIDLGFEEDIRTILTYFK 347

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V VN+        D+      V    +   ++ 
Sbjct: 348 SQRQTLLFSATMPKKIQNFAKSALVRPVTVNVGRAGAASLDVIQEVEYVKQEAKMVYLLE 407

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ +++  R     V
Sbjct: 408 CLQ-KAPPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQFRAREKDV 466

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I +       
Sbjct: 467 LVATDVASKGLDFPDIQHVINYDMPEDIENYVHRIGRTGRCGKTGIATTFINKACDESVL 526

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI 386
           R  +   +    +  P +EAI + + + I
Sbjct: 527 RDLKHLLIEAKQKLPPVLEAIEDENEEYI 555


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 190/342 (55%), Gaps = 11/342 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  G+ + T +Q       L+ +D++  A+TGSGKT+  G  + + +L  + 
Sbjct: 444 PEILRELLSA-GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL--GYLIPAFILLRHC 500

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R    + P  L +APTRELA Q+  E    + ++  +   C+ GG     + ++L+ GA 
Sbjct: 501 RNDSRNGPTVLILAPTRELATQIQDEA-LRFGRSSRISCTCLYGGAPKGPQLKELERGAD 559

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R+ LM++
Sbjct: 560 IVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYT 619

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   + V+VNI    E   +  I     +V   +++  +  ILR    
Sbjct: 620 ATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQER 679

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+       + +  H F  V + G+ +Q ER   L   R G++ V IATD
Sbjct: 680 GSK-VIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATD 737

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++
Sbjct: 738 VAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVA 779


>gi|47459115|ref|YP_015977.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
 gi|47458444|gb|AAT27766.1| DEAD-box ATP-dependent RNA helicase [Mycoplasma mobile 163K]
          Length = 557

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 191/333 (57%), Gaps = 4/333 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T +QE +++   + +++L  AQTG+GKT AFG+++ + +L      + +S 
Sbjct: 16  LKKIGFEAPTQIQELVISTANKNQNILGCAQTGTGKTAAFGVSIINKILKNKKNNAKSSL 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNGAHIVVGTP 132
              L + PTREL+VQV   ++ L++    + ++ I G   +RE      + G  I+V TP
Sbjct: 76  -TTLILVPTRELSVQVNENIK-LFSSNLPITSLAIYGGMRNRESHFSIFKRGLDIIVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D+I+   L++S +  VVLDEAD M+D+GF DD++ IL  + +++++++FSAT+  A
Sbjct: 134 GRLLDYIKSGKLSLSQVDTVVLDEADLMVDMGFIDDVKEILKRTKEEKQVMLFSATMPKA 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L +++      +   S  +   +I++ A     S     +  +L+     +AIVF  
Sbjct: 194 IMNLVEDFMGKFELIQTESFAKPLQNIEHLAYFYTSSKPVELLQQMLKEEKIYSAIVFVK 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+        +L++   ++ +L G+ +Q  RS  L+  ++G+ ++ +ATDVA+RGID+ D
Sbjct: 254 TKRDADNVENLLSKMKLKIDSLHGDKTQASRSRILRSFKEGKIQILVATDVASRGIDIDD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V +  +  +PE   HR GRTGRA + G ++
Sbjct: 314 ISHVFNLNIPEDPEIYTHRVGRTGRASKVGKAI 346


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 184/346 (53%), Gaps = 5/346 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  + P  +   + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 93  VRTFEEASFPDYVLHEVLKAGFTEPTAIQAQGWPMALKGRDLIGLAETGSGKTLAY-LLP 151

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +      +P   P+ L +APTRELAVQ+ +E     A + +      GG     + 
Sbjct: 152 AIVHVNAQPYLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQI 211

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  +V+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 212 RDLQKGVEVVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+ +  D  +V I S + + +  ID    +V+  ++   ++ 
Sbjct: 272 DRQTLYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIK 331

Query: 238 IL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L         +VF  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 332 LLEEIMDGSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 391

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG
Sbjct: 392 IMTATDVAARGLDVKDIKCVINYDFPGSCEDYVHRIGRTGRAGAKG 437


>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
 gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
          Length = 399

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 2/336 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL  +GY + + +Q   +   +  +DV+ +AQTG+GKT  F L +   L   + + +  
Sbjct: 2   EALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERL--RHGKRAGR 59

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   AL + PTRELA QV   ++       +   V  GGV  + +   L+ G  ++V TP
Sbjct: 60  AQIRALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATP 119

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   L    L+ +VLDEAD MLD+GF  DI  ++   P KR+ L+FSAT S  
Sbjct: 120 GRLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAP 179

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA     D V + +  EN+    ++       ++ + + + +++R    +  +VF  
Sbjct: 180 IRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRTGEWRQVLVFSR 239

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R    L +      A+ G  SQ  R+ ALQ  + G  RV +ATD+AARGID+  
Sbjct: 240 TKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQ 299

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  V++ +L +  E+ +HR GRTGRAG  G +V ++
Sbjct: 300 LPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLV 335


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 188/356 (52%), Gaps = 16/356 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ ++I   +S   Y   T VQ+  +     ++D++  AQTGSGKT AF + + S +  E
Sbjct: 177 NLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPILSRIFEE 236

Query: 66  NDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               +P++          P+AL +APTRELA Q+  E      ++ +   V  GG  V  
Sbjct: 237 GPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVYGGADVST 296

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RD+  G H++V TPGRL D I+   + +  +K +VLDEAD MLD+GF   I  I++  
Sbjct: 297 QMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQIREIVEKC 356

Query: 177 --PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P+  +R+ LMFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 357 DMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKR 416

Query: 233 NAIVNILRYHGAKN-AIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQM 289
             ++++L   G  +  +VF  T+       + L      +   ++ G+  Q+ER  AL  
Sbjct: 417 EFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKEREQALAS 476

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            R G   + +AT VAARG+D+P+++ VI+ ++ S+ E  +HR GRTGR G  G++ 
Sbjct: 477 FRVGTTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTGLAT 532


>gi|319761928|ref|YP_004125865.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116489|gb|ADU98977.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 584

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 199/387 (51%), Gaps = 51/387 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQE-----AILNPDL--REKDVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   T+VQE     A+   D+  R  D++VS+QTGSGKT AF L +  
Sbjct: 40  PELV-QAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAFLLPVLH 98

Query: 61  TLLA------------------------------------ENDRFSPASAPLALAIAPTR 84
           TL+                                      + R   A+AP AL + PTR
Sbjct: 99  TLIQQQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPRNFKAAAPGALVLCPTR 158

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R   
Sbjct: 159 ELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQN-ANLVVATPGRLLDLQRSMQ 217

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     +
Sbjct: 218 IKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAMRVMHE 277

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
                 +V I +   +H++I         +     +++  LR      AIVF ST+    
Sbjct: 278 GGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFASTQVECD 337

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 338 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSITHVFN 397

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G++V
Sbjct: 398 FGLPMKAEDYTHRIGRTGRAGRDGLAV 424


>gi|330800403|ref|XP_003288226.1| hypothetical protein DICPUDRAFT_47799 [Dictyostelium purpureum]
 gi|325081734|gb|EGC35239.1| hypothetical protein DICPUDRAFT_47799 [Dictyostelium purpureum]
          Length = 615

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 176/314 (56%), Gaps = 13/314 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D++  A TGSGKT+AF L     +++   R S  + PL L +APTRELA Q+    +   
Sbjct: 145 DLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLILVMAPTRELAQQIEDVCKSSV 204

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
             T +      GG+    + R L+NG  I++GTPGRL D +R   L  S ++ +VLDEAD
Sbjct: 205 RGTSIRQLCAYGGLGKLDQCRILRNGVDIIIGTPGRLNDLLRKHHL--SSVQYLVLDEAD 262

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----- 213
            MLD+GF   IE ++D  PK+R+ LMFSAT    +  LA  + +D +++ + S+      
Sbjct: 263 RMLDMGFLPQIETLIDQIPKERQTLMFSATWPKEVKQLASKFLRDPIKITVGSQELTGSI 322

Query: 214 --RQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA--EHL 268
              QH ++ID  A +       + I  IL    +   IVFC+ +     F   L+  ++ 
Sbjct: 323 NVTQHITNIDELADIQVDDLIFDEINKILTADRSNLVIVFCNEKYKCDDFQHYLSASKNE 382

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
             +V  SG+  Q++R   L++ R+ R R+ IATDVAARG+D+P ++ V +  L  N E+ 
Sbjct: 383 KSIVLHSGK-DQRQREQGLRLFREKRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDY 441

Query: 329 LHRSGRTGRAGRKG 342
           +HR GRTGRAG+ G
Sbjct: 442 VHRIGRTGRAGKTG 455


>gi|321252297|ref|XP_003192357.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis ; Dbp3p [Cryptococcus gattii WM276]
 gi|317458825|gb|ADV20570.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis, putative ; Dbp3p [Cryptococcus
           gattii WM276]
          Length = 639

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 203/360 (56%), Gaps = 22/360 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
           N+      A+   G+  +T VQ   + P L  KDVL +A+TGSGKT+AF    + L STL
Sbjct: 167 NLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLVPSVELLSTL 226

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                RF P +    + I+PTRELA+Q   V +EL   +++T     V +GG +   E  
Sbjct: 227 -----RFKPVNGTGVIIISPTRELALQIFGVAKELMQDHSQT---FGVLMGGANRKAEAD 278

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
            L  G +++V TPGRL DH++  KG    +LKA+V+DEAD +L++GF ++++ I+   P 
Sbjct: 279 KLVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPS 338

Query: 178 KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDY--RAVLVALSD-RDN 233
           + R+ ++FSAT +  +T LA+ + +   + +N+  E ++ S  D   +  +V  SD R  
Sbjct: 339 ENRQSMLFSATQTTKVTDLARISLRPGPLYINV-DETKEASTADMLEQGYVVCESDQRFM 397

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      + 
Sbjct: 398 LLFTFLKKNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINA 457

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
            A + + TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S +F++P  +
Sbjct: 458 PAGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSEL 517


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 185/362 (51%), Gaps = 35/362 (9%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS--PASA 74
           GY + T +Q A +   ++ +D++  A TGSGKT AF L L   +  L   D F       
Sbjct: 362 GYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDG 421

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+NGA I++ TPGR
Sbjct: 422 PYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYSLRNGAEIIIATPGR 481

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----------------- 177
           L D I  + L +S    V++DEAD M+DLGF + +  ILD+ P                 
Sbjct: 482 LVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSDAAENAAAM 541

Query: 178 ------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                       + R+ +M++AT+  A+  +A+ Y +    V I S       ++ R  L
Sbjct: 542 SQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEL 601

Query: 226 VALSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           +A  D+    +  +   G      IVF + + +     + + +  F  V L G  +Q++R
Sbjct: 602 IAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQR 661

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGRAG+ G+
Sbjct: 662 EAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGRAGKSGV 721

Query: 344 SV 345
           ++
Sbjct: 722 AI 723


>gi|119179097|ref|XP_001241172.1| hypothetical protein CIMG_08335 [Coccidioides immitis RS]
 gi|118597485|sp|Q1DMX8|PRP28_COCIM RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 817

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 194/373 (52%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 384 LPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 443

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F    +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   L+
Sbjct: 444 RLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLR 503

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 504 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 563

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 564 PDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 623

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   + +IL     +   IVF + + +     + + +  +  V L 
Sbjct: 624 TVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLH 683

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 684 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 743

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 744 GRAGKSGVAITFL 756


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 20/343 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +    
Sbjct: 18  MFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPI---- 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++PTRELA Q+  E++ L     + V++ IGG+S   +R+   
Sbjct: 74  LERN--------STALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQ--- 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K   
Sbjct: 123 --SKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAG 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSATI   I TLAK + KD +R  +  E +   ++  + V V  +D ++ +  +L   
Sbjct: 181 F-FSATIPDEIMTLAKEFSKD-LREIVLDEYKPVEEVKQKFVKVR-NDWNDKVSKLLEEI 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 238 NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++
Sbjct: 298 LASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAI 340


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 19/338 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 44  YQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 102

Query: 80  IAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + PTRELA QV         G +L +L A          GGVS++ +   L+ G  ++V 
Sbjct: 103 LVPTRELAEQVLQSFVEYGKGLDLRFLAA---------YGGVSINPQMMKLRKGVDVLVA 153

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT S
Sbjct: 154 TPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFS 213

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF
Sbjct: 214 DEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEHALVF 273

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+
Sbjct: 274 VKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDI 333

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 334 DDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 371


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 181/328 (55%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT   G+++   L  +           AL
Sbjct: 48  GFERPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATLGISILQMLDTQ------LRETQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L   T V    C GG ++  + R L  G H++ GTPGR+ D 
Sbjct: 102 VLSPTRELASQIQKVILALGDYTNVHCHACYGGTNIGEDIRKLDYGQHVISGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K  VLDEADEMLD GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 162 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   + + + + ++        +++FC+T+  V
Sbjct: 222 KFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTVTQSVIFCNTKRKV 281

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +  T+ + ++ F V ++ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 282 AWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAGDSRVLITTDLWARGIDVQQVSLVI 341

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 342 NYDLPNNRELYIHRIGRSGRFGRKGVAI 369


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 184/343 (53%), Gaps = 19/343 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      +   A
Sbjct: 16  LQELNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVASNRA 75

Query: 75  PLALAIAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + L + PTRELA Q+         G +L +L A          GGVS++ +   L+ G 
Sbjct: 76  RV-LVLVPTRELAEQLLQSFVDYGKGLDLRFLAA---------YGGVSINPQMMKLRKGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P++R+ L+F
Sbjct: 126 DVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPERRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  +A N  +  V +++++ N   S I    V V   ++    ++++  +  +
Sbjct: 186 SATFSDEIRAMAANILRKPVDISVSAPNATASKIRQWVVTVDKRNKPELFMHLVARNKWE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  TR  V     VL +  + V  + G+  Q  R  AL+  +    ++ +ATDVAA
Sbjct: 246 HALVFAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQMLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 306 RGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 747

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/372 (33%), Positives = 203/372 (54%), Gaps = 19/372 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +ALS  GY   +++Q A +   L  KD++  A TGSGKT A+ + +   LL     + 
Sbjct: 251 ILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLL-----YK 305

Query: 71  PASAPLA--LAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           P+  P    + +APTRELA+QV   G+++       G+   + +GG+++ ++ ++L+   
Sbjct: 306 PSKMPSTRVIVLAPTRELAIQVADVGKKIGQFV--NGLTFGLAVGGLNLRQQEQELKKRP 363

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHIR     N+  ++ +V DEAD ML+ GF+ ++  IL   P  R+ ++
Sbjct: 364 DIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQTML 423

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILRYH 242
           FSAT++  I +L +   K  VRV I +     S++  ++  +    S +   + NIL   
Sbjct: 424 FSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRKRESSKPALLFNILSEM 483

Query: 243 GAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              ++  IVF S +    R    L     +V  L G L+Q++R  A+   ++    + I 
Sbjct: 484 DGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPILIC 543

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P +ELVI+ ++    E  LHR GRT RAGRKG+S+  + ++ Q R   + 
Sbjct: 544 TDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDR--NIV 601

Query: 361 REANVSVVWEPA 372
           +EA   V  E A
Sbjct: 602 KEAIKQVETENA 613


>gi|290476142|ref|YP_003469042.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
 gi|289175475|emb|CBJ82278.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 196/380 (51%), Gaps = 12/380 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E+GY   T++Q   +   +  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALNEKGYERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  + +   A T + VA   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVAEQAQSFAAHTNLDVATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF +D+E I   +  +++ L+FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQTLLFSATLEGET 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+    D V ++     R+   I    YRA    L  +   + ++L+      +IV
Sbjct: 196 IRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRA--DNLEHKTALLCHLLQQPDVTKSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L +   Q   L GE+ Q +R++A++ + DGR  V +ATDVA+RG+D
Sbjct: 254 FVRKRERVREIVDYLHKAGIQACFLEGEMVQTKRTDAVKRLNDGRVNVMVATDVASRGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN----V 365
           + ++  V + +L    +  LHR GRT RAGRKG ++ ++  +      ++ R  N    V
Sbjct: 314 IENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGKVTRYLNEPLKV 373

Query: 366 SVVWEPAPSVEAIRERDAQR 385
            VV E  P  +A  E+ + +
Sbjct: 374 RVVDELRPQTKAPSEKKSYK 393


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 185/360 (51%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 68  FPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIVHINAQ- 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 127 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLARGV 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 186 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA +YQKD ++VNI S +    H       V      RD    ++     
Sbjct: 246 SATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMS 305

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 306 DKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG  G ++ +   +  ++A  L +
Sbjct: 366 DVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNSKQARDLVQ 425


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 193/356 (54%), Gaps = 12/356 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+GE LS+ G+ + T +Q       L  +D++  A TGSGKT+++   L S +   +  F
Sbjct: 120 VMGE-LSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSY--LLPSIVHINHQPF 176

Query: 70  --SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
                  P+AL +APTRELA QV +++ + + ++  + + C+ GG    ++ RDL+ G  
Sbjct: 177 LERGVDGPIALVLAPTRELAQQV-QQVAFAFGRSSKIKSTCVYGGAPKGQQIRDLERGVE 235

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     VVLDEAD MLD+GF   I  I++     R++ M+S
Sbjct: 236 ICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDRQVQMWS 295

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILR---YH 242
           AT    +  LA+++ +D + VNI S     +    + + V   S++D  ++ +L      
Sbjct: 296 ATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLLEEIMQE 355

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VFC T+       + +    +  + L G+ SQ ER   L   RDGRA + +ATD
Sbjct: 356 KDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGRAPILVATD 415

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +  F    NM++ A+
Sbjct: 416 VASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMKQAAD 471


>gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990755|gb|AEF09738.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 421

 Score =  182 bits (463), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
 gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
          Length = 754

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 187/368 (50%), Gaps = 30/368 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
            +P+ +  A+ + GY   + +Q A +   L ++DV+  A+TGSGKT AF    LA    L
Sbjct: 328 TMPEQVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAYIQEL 387

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               D  + A  P AL +APTRELA Q+  E           VA  +GG S+  +   L+
Sbjct: 388 PPMTDEVA-ALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIEEQGFKLR 446

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------- 175
            G  IV+GTPGR+ D +  +   +     +VLDEAD M+D+GF   +  ++DS       
Sbjct: 447 RGCEIVIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSMSAESLK 506

Query: 176 -----------------SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R   MFSAT+ P++  LA+ Y ++   V I S  +  SD
Sbjct: 507 PEEEAEKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSAGKT-SD 565

Query: 219 IDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           +  + V    S++  A +  +L  +    AI+F +T+  V   + +  +  + V A+ G 
Sbjct: 566 LIKQIVQWTTSNQKPAQLELVLSQYPDTQAIIFVNTKRVVDHVSNLCFKMGYSVGAIHGG 625

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ +R  +L+  + G   + +ATDVA RGID+  ++LV++ E+    EN  HR GRTGR
Sbjct: 626 KSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRIGRTGR 685

Query: 338 AGRKGMSV 345
           AGR+G +V
Sbjct: 686 AGRQGTAV 693


>gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 421

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 182/343 (53%), Gaps = 19/343 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 38  LQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 97

Query: 75  PLALAIAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + L + PTRELA QV         G +L +L A          GGVS++ +   L+ G 
Sbjct: 98  RV-LVLVPTRELAEQVLQSFVEYGKGLDLRFLAA---------YGGVSINPQMMKLRKGV 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+F
Sbjct: 148 DVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLF 207

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  +
Sbjct: 208 SATFSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWE 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAA
Sbjct: 268 HALVFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 328 RGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 370


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 187/343 (54%), Gaps = 20/343 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +    
Sbjct: 18  MFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPI---- 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++PTRELA Q+  E++ L     + V++ IGG+S   +R+   
Sbjct: 74  LERN--------STALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQ--- 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K   
Sbjct: 123 --SKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAG 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSATI   I TLAK + KD +R  +  E +   ++  + V V  +D ++ +  +L   
Sbjct: 181 F-FSATIPDEIMTLAKEFSKD-LREIVLDEYKPVEEVKQKFVKVR-NDWNDKVSKLLEEI 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 238 NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++
Sbjct: 298 LASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAI 340


>gi|257077167|ref|ZP_05571528.1| DEAD box protein [Ferroplasma acidarmanus fer1]
          Length = 430

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 204/377 (54%), Gaps = 17/377 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M I EN+ + +G       +   T +QE  +   L  KDV++ ++TGSGKT A+ L + +
Sbjct: 1   MDISENLKKSLGLM----KFTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLN 56

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++    ++    S   A+ I PTRELA+Q  R    L   +G+   +  GG S+ R+  +
Sbjct: 57  SV----EKLKGKSVK-AIIILPTRELALQTHRVASRLGKISGIKSTIVYGGASIIRQVEE 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G+ IV+GTPGR+ D    K L + H+K +VLDEAD MLD+GF DDI+ I+  +P+ R
Sbjct: 112 LP-GSDIVIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGR 170

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++ SAT+   + T+A ++  +   V+   +    S I +   +    D+ + +++ + 
Sbjct: 171 QTILLSATLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDKFSTLMSYIH 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + ++ AIVF  T+ S      +L+   F  V + G + Q  R  ++   R   + + +A
Sbjct: 231 SYNSRKAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVF-----VIPQNMQ 353
           T+VAARG+D+P++  +I+ +   + E   HR GR+GR G+ G  M++F      + Q++Q
Sbjct: 291 TNVAARGLDIPNITDIINFDAPDSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSLIQSIQ 350

Query: 354 RRAERLFREANVSVVWE 370
           RR      + N+ +  E
Sbjct: 351 RRNRIKMEKINIDLETE 367


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 186/348 (53%), Gaps = 11/348 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRF 69
           + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+      F
Sbjct: 209 KTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASSF 268

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S    P A+ +APTREL  Q+  E       T V   V  GGVS   + R+L  G +++ 
Sbjct: 269 SELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTGYQIRELCRGCNVLC 328

Query: 130 GTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLM 184
           GTPGRL D I RGK + +S L+ +VLDEAD MLD+GF   +  ++ S    S + R+ LM
Sbjct: 329 GTPGRLMDVIGRGK-VGLSKLRYLVLDEADRMLDMGFEPAMRRLVGSPGMPSKENRQTLM 387

Query: 185 FSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  +  ++ K D + + +       +D++   V V    +   + ++L+  G
Sbjct: 388 FSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFSKREQLFDLLKTTG 447

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V +AT V
Sbjct: 448 TERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADFRSGKCPVMVATSV 507

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V F  P+
Sbjct: 508 AARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYDPE 555


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 184/353 (52%), Gaps = 19/353 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-----ASTLLAENDRFSPAS 73
           G+ N T +Q       L+ +D++  A+TGSGKT+AF L       A  +L E+D      
Sbjct: 403 GFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDD------ 456

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P+ L +APTRELA+Q+  E    +  T  +   C+ GG S H +   L+ G  IV+ TP
Sbjct: 457 GPIVLVLAPTRELALQIQEETN-KFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATP 515

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LMFSAT    
Sbjct: 516 GRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKE 575

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA----KNAI 248
           +  LA ++  D ++V+I S     ++ + R ++    D +     +L + G+    +  I
Sbjct: 576 VQALAHDFLTDHIQVHIGS-TEITANHNVRQIVEVCQDFEKK-ERMLSFLGSVGRDEKVI 633

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V    +VL    F+ + + G  SQ ER   L   ++G   + IATDVA+RG+
Sbjct: 634 VFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGL 693

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ D++ V++ +  +  E  +HR GRT RAG  G+S  ++  +  R A  L +
Sbjct: 694 DIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIK 746


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 184/367 (50%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L++ G+V  T +Q       +  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 118 FPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAF-LLPAIVHINAQ 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELAVQ+  E       + +    C GGV    + RDL  G  
Sbjct: 177 PYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARDLSEGVE 236

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I       R+ L++S
Sbjct: 237 ICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDRQTLLWS 296

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT    +  LA++  +++ V +N+ +   +  H+   Y  V+     RD   V + R   
Sbjct: 297 ATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKVLLERVMD 356

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+      T+ L    +  + + G+  Q+ER   L   + G++ + IATDV
Sbjct: 357 GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 416

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ--NMQRRAERLF 360
           A+RG+D+ D+  V++ +     E+ +HR GRTGRAG KG +  F  P    M R   ++ 
Sbjct: 417 ASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKIKMARDLVQIL 476

Query: 361 REANVSV 367
           REAN +V
Sbjct: 477 REANQTV 483


>gi|16272830|ref|NP_439053.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae Rd KW20]
 gi|260579983|ref|ZP_05847813.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
 gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd KW20]
 gi|260093267|gb|EEW77200.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
          Length = 418

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 359


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 193/374 (51%), Gaps = 15/374 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I   +++ G+   T +Q       L  +DV+  AQTGSGKT  F L     ++A+
Sbjct: 95  SVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTATFLLPAVIHIMAQ 154

Query: 66  NDRFSPASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
             R      P+ L + PTRELA QV    +E    +A    + A+C  GG +   + R++
Sbjct: 155 -PRLLRNEGPICLVLVPTRELAQQVLSVAKE----FADAASLRAICFYGGSAKGTQLREM 209

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I + TPGRL D IR +   +S +  +VLDEAD MLD+GF   I  IL      R+
Sbjct: 210 QKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDRQ 269

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL 239
            LM+SAT    + TLA+ +  D ++VNI S +  H++ +   ++  + D  ++  ++ +L
Sbjct: 270 TLMWSATWPKEVQTLAREFLTDYIQVNIGSVSL-HANPNITQIVEIMDDWRKEQRLIELL 328

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    +VF  T+    + T  L    F V A+ G   Q++R   L   + GR  + I
Sbjct: 329 SSFGRSRTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILI 388

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ ++E V++ +  +  E+ +HR GRT R+ ++G +         R+A  L
Sbjct: 389 ATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKRGTAFTFFTYKNARQARDL 448

Query: 360 FR---EANVSVVWE 370
                EAN  +  E
Sbjct: 449 IEILDEANQEITPE 462


>gi|154345840|ref|XP_001568857.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066199|emb|CAM43989.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 571

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/364 (33%), Positives = 197/364 (54%), Gaps = 10/364 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAST 61
           +   +PQ +   L  +G+   T +Q    +  L  +D++  A+TGSGKT+AF + ALA  
Sbjct: 107 MLTTVPQYLKAKLLAQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHI 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
            L E  +      P+ + +APTRELA Q+  E E +      +   CI GG     +   
Sbjct: 167 ALQEPLKM--GDGPMVIVLAPTRELAQQI--EQETIKVLPQSIRCGCIYGGAPKGPQLGL 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R
Sbjct: 223 LRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDR 282

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + LMFSAT    I  LA ++QK+ VR+N+ S E   + D+    +L + + + + +  ++
Sbjct: 283 QTLMFSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLM 342

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC- 298
             H  +  +VFC T+ +       L  +    +A+ G+  Q++R   L+  R   +R+C 
Sbjct: 343 ERHRNQRVLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKD-SRLCV 401

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAE 357
           +ATDVAARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  Q  A 
Sbjct: 402 VATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNAS 461

Query: 358 RLFR 361
            +F+
Sbjct: 462 TVFQ 465


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 203/407 (49%), Gaps = 28/407 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++  P  + E + + G+   T +Q       ++ +D++  A+TGSGKT+++ L  
Sbjct: 98  VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157

Query: 59  -----ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                A  +LA  D       P+ L +APTRELAVQ+ +E     + + +      GGV 
Sbjct: 158 IVHVNAQPMLAHGD------GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVP 211

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+
Sbjct: 212 KGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIV 271

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRD 232
                 R+ L +SAT    +  L+K +  +  +V I S + + +  I     +++ S + 
Sbjct: 272 SHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY 331

Query: 233 NAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           N +V +L         +VF  T+    + T+ L    +  +++ G+ SQ ER   L   R
Sbjct: 332 NKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFR 391

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G++ +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +       
Sbjct: 392 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVA 451

Query: 352 MQRRAERL---FREANVSVVWE----------PAPSVEAIRERDAQR 385
             R A+ L    +EA   V  E          P P +   R+R ++R
Sbjct: 452 NARFAKELTNILQEAGQKVSPELASMGRSTAPPPPGLGGFRDRGSRR 498


>gi|32363501|sp|P44922|RHLB_HAEIN RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 415

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 4/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 356


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 195/384 (50%), Gaps = 17/384 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N +R 
Sbjct: 144 LAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNNLNRA 203

Query: 70  SPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P    SAP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L  G  
Sbjct: 204 KPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCG 263

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PKKR 180
           ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         P +R
Sbjct: 264 LLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGER 323

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L++SAT    I  +A+ +      + +        +I      V   D+   ++ +L+
Sbjct: 324 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLK 383

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  RV +A
Sbjct: 384 EHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLVA 443

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           TDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++       +N+     
Sbjct: 444 TDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIVDDLI 503

Query: 358 RLFREANVSVVWEPAPSVEAIRER 381
            L RE N +V+    P V+A+ ++
Sbjct: 504 PLLRETNQTVL----PEVQALAKK 523


>gi|15241415|ref|NP_199941.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75335491|sp|Q9LU46|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35
 gi|8843865|dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|110740861|dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|332008678|gb|AED96061.1| DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]
          Length = 591

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 11/355 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +    L E
Sbjct: 152 KFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQE 211

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHR 116
            +   P +A   P+ L + P+RELA Q    +E   A         +   +CIGG+ +  
Sbjct: 212 -EMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRS 270

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI  + D  
Sbjct: 271 QLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHF 330

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++
Sbjct: 331 KSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 390

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   +   ++FC  +A V    + L     + VA+ G   Q++R  A+   + G+  
Sbjct: 391 ECLQ-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKD 449

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 450 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 504


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 187/344 (54%), Gaps = 22/344 (6%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +ALSE GY+  T VQE ++   L  K V+  A+TGSGKT A+ + +    
Sbjct: 1   MFENLSEDLRKALSEAGYIKPTKVQEVVIPELLNGKSVIAQAKTGSGKTAAYVIPI---- 56

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++PTRELA Q+  E+  L     + V++ IGG+S   +R+   
Sbjct: 57  LERN--------STALILSPTRELATQILDEIRKLGKYKQIDVSLIIGGMSYDGQRQ--- 105

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    +++DEAD MLD+GF DDI  IL+ S  K   
Sbjct: 106 --SRIVVGTPGRLLDLWSKGKIDFSGYDVIIVDEADRMLDMGFIDDIRMILNHSNAKITG 163

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRY 241
             FSATI   I TLAK + KD +R  +  E +   ++  + + V + +D  + +  +L  
Sbjct: 164 F-FSATIPDEIMTLAKEFSKD-LREIVLDEYKPVEEV--KQIFVKVRNDWSDKVSKLLEE 219

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 220 ISGEKILVFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 279

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+A+RGID+ D++ VI+ ++  + E  +HR GRTGR GR G +V
Sbjct: 280 DLASRGIDIVDVDKVINFDIPRDVETYIHRVGRTGRMGRVGQAV 323


>gi|297841061|ref|XP_002888412.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334253|gb|EFH64671.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 11/355 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +    L E
Sbjct: 148 KFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQE 207

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHR 116
            +   P +A   P+ L + P+RELA Q    +E   A         +   +CIGG+ +  
Sbjct: 208 -EMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRS 266

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI  + D  
Sbjct: 267 QLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHF 326

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++
Sbjct: 327 KSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 386

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   +   ++FC  +A V    + L     + VA+ G   Q++R  A+   + G+  
Sbjct: 387 ECLQ-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKD 445

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 446 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 500


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLTH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+       P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAAEGRQVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           + G  I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 EQGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWVFRRIPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSI 357


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/331 (33%), Positives = 182/331 (54%), Gaps = 6/331 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-AL 78
           +   + +Q+  +   L  K+++ +AQTG+GKT +F L +   L   +++  P S  + AL
Sbjct: 21  HTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPMLEML---HEQAKPYSKNVHAL 77

Query: 79  AIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV RE    Y K T +      GG  +  ++  L+ G  I+V TPGRL D
Sbjct: 78  VLTPTRELAAQV-RESVHSYGKLTNITSTAVFGGAKIFPQKAKLKKGVDILVATPGRLLD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  K + +  ++ +VLDEAD MLD+GF  DI+ I+  +P  R+ L+FSAT SP I  LA
Sbjct: 137 LVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMTPPTRQNLLFSATFSPEIKKLA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++     V ++  S N   S I      V  + + + + +++       A+VF  T+   
Sbjct: 197 QSLGDGLVEISAQSPNTTVSKIKQIVYHVDKNKKSDLLAHMIEEEQWDQALVFSKTKHGC 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +    L     +   + G+ +Q  R+ AL+  +    RV +ATDVAARGID+ +L  V+
Sbjct: 257 EKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVLVATDVAARGIDISNLPFVV 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ++ + P + +HR GRTGRAG++G ++ ++
Sbjct: 317 NFDMPTYPNDYIHRIGRTGRAGQEGTAISLM 347


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 195/389 (50%), Gaps = 19/389 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +  +G+   T +Q   +   +  +DV+  A+TGSGKT AF   +   +L + D  
Sbjct: 304 VMMQLIQRQGFAQPTPIQAQAVPTVMSGRDVIGIAETGSGKTAAFVWPMIKHILDQPD-L 362

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P+A+ +APTREL +Q+ +          + VA   GG S + + + L++G  +VV
Sbjct: 363 KRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGGGSRYEQVKTLKDGCEVVV 422

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I+ K  N+  +  +VLDEAD M D+GF   +  I++ +   R+ L+F+AT 
Sbjct: 423 ATPGRLIDLIKDKATNLRRVTYLVLDEADRMFDMGFSLQVNSIINHTRPDRQTLLFTATF 482

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNA 247
              +  LA+   ++ VR+ + +  + ++DI+ R  ++    S       +++    A N 
Sbjct: 483 KKKVEKLARQALRNPVRIVVGTVGKANTDIEQRVEIMQDTASKWGWLKAHLVEMQSAGNV 542

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF + +A      + +    FQ V + G++ Q  R   L   +    R+ +ATDVAARG
Sbjct: 543 LVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKFKKQTVRILVATDVAARG 602

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +  V++ + + + +   HR GRTGRAG KG             A  L      S 
Sbjct: 603 LDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGT------------AWTLLLPTETSF 650

Query: 368 VWEPAPSVEAIRERDAQRIL----QDPLF 392
             +   S+EA  +R +  +L    QDP F
Sbjct: 651 AAQLVESLEAASQRVSDALLHMAEQDPRF 679


>gi|294635763|ref|ZP_06714224.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291090902|gb|EFE23463.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 339

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 174/308 (56%), Gaps = 8/308 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL L   +  +  +F   S 
Sbjct: 39  LKELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLGLLQHI--DASQFITQS- 95

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              L + PTRELA QV   L  L      + V    GG+    +R  L +  HI+V TPG
Sbjct: 96  ---LVLCPTRELADQVANALRNLARCIPNIKVLTLCGGLPFSVQRNSLTHAPHIIVATPG 152

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH++ + ++++ L+ +VLDEAD MLD+GF + ++ ++  +P+KR+ L+FSAT   AI
Sbjct: 153 RLLDHLQKETVSLAALQTLVLDEADRMLDMGFAEALDEVIAWAPEKRQTLLFSATWPSAI 212

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +++  Q+D + + I + +   + ++ R   VA S +   +  +L  +   + +VFC+T
Sbjct: 213 AAISRRIQRDPLSIEIDTVDALPA-VEQRFYEVARSAKLGLLQTLLSQYQPASCVVFCNT 271

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L +    V+ L G++ Q+ER   L    +G +RV +ATDVAARG+D+  L
Sbjct: 272 KKDCQAVGDALNDAGQSVLVLHGDMEQRERDQTLVRFANGSSRVLVATDVAARGLDIKAL 331

Query: 314 ELVIHAEL 321
           E+VI+ EL
Sbjct: 332 EMVINYEL 339


>gi|149238864|ref|XP_001525308.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013494|sp|A5E0U9|DBP8_LODEL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|146450801|gb|EDK45057.1| hypothetical protein LELG_03236 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 444

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 197/373 (52%), Gaps = 29/373 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L      + TS+Q A +   L+ +D +  A+TGSGKT+AF  AL  T  ++ D F 
Sbjct: 14  LSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFA-ALMLTQWSQ-DPF- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+  +   L A   + V V +GG    ++  +LQ   H V+ 
Sbjct: 71  ---GIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFVKQTLELQKKPHFVIA 127

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLM 184
           TPGRL DHI   G      +  +K +VLDEAD +L   F  D++  F +    +KR+ L+
Sbjct: 128 TPGRLADHILNSGEETVSGLRRIKYLVLDEADRLLSNSFGSDLQRCFTILPPSEKRQTLL 187

Query: 185 FSATISPAITTLAKN-----------YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           F+AT++ A+  L              +Q DA    IA        +    V V    ++ 
Sbjct: 188 FTATVTDAVKALKDKPRAEGKLPVFLHQVDAGVDQIAIPK----TLSTMYVFVPSYVKEA 243

Query: 234 AIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +IL+   +    A+VF +   +     ++L +  F+V +L  E+ Q ER+N+L   +
Sbjct: 244 YLTSILKLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G AR+ IATDVA+RG+D+P +ELV++ ++ ++P++ +HR GRT RAGRKG ++ +I + 
Sbjct: 304 AGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGEK 363

Query: 352 MQRRAERLFREAN 364
              R E +    N
Sbjct: 364 DIERIESIEERIN 376


>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
 gi|74897375|sp|Q55BR9|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
           Full=DEAD box protein 49
 gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
          Length = 508

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 193/344 (56%), Gaps = 22/344 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   L+ +D++ SA+TGSGKT +F + + + L    D +       A+
Sbjct: 23  GFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQL--SEDPY----GVFAV 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+G +   + A   V  +V IGG+    +   L    HI+V TPGRL  H
Sbjct: 77  ILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASH 136

Query: 139 IR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAITT 195
           +  G  + +   K +VLDEAD +L   F  +I  IL+    P+KR+ L+FSAT++  +T 
Sbjct: 137 LNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQTLLFSATMTKNLTK 196

Query: 196 LAKNYQKDAVRVN---IASENRQHSDIDY---RAVLVALSDRDNAIVNILRYHGAKNAIV 249
           L      D++ +N   I  +N ++  +D      + +    +D  +V IL+ H   +AIV
Sbjct: 197 L------DSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +   +V     +L +     V+L   L Q+ R  AL+  + G+ +V +ATDVA+RG+D
Sbjct: 251 FVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +PD+++VI+ +LS++ ++ +HR GRT R GR G ++ F+ P ++
Sbjct: 311 IPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDV 354


>gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 639

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 22/378 (5%)

Query: 5   ENIPQVIGEALSER------------GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P  + E   E+             Y   T VQ+  +   L  +D++  AQTGSGKT 
Sbjct: 157 ENVPDPVTEFAEEQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTG 216

Query: 53  AFGLALASTLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVV 104
            F     + +L       P           P  L ++PTRELA Q+  E +     TG+ 
Sbjct: 217 GFLFPTLAAMLRVGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIA 276

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
             V  GG  V R+ R+L+ G  ++V TPGRL D +    +++S ++ ++LDEAD MLD+G
Sbjct: 277 PVVIYGGAEVGRQLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMG 336

Query: 165 FRDDIEFILDSS--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           F   I  I++    P++R+  MFSAT    I  LA ++ +D + + +        D+   
Sbjct: 337 FEPQIRRIVEQEDMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQT 396

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              +   D+++ +V  L        +VF  T+        +L    F   ++ G+ SQ+E
Sbjct: 397 VEYIEQYDKEDYLVRFLNQVQDGLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQRE 456

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   + GR  V +ATDVAARG+D+  +  VI+ +L +N ++ +HR GRTGR G  G
Sbjct: 457 REQALASFKSGRTPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVG 516

Query: 343 MSVFVIPQNMQRRAERLF 360
            ++ ++ +  +  A  ++
Sbjct: 517 YALSMMNEKNRNIAREMY 534


>gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
 gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
          Length = 433

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 192/370 (51%), Gaps = 10/370 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+  +GY   T +Q   +   L   D+L SAQTG+GKT  F L +   L A+  R  PA 
Sbjct: 15  AIEAQGYTEPTPIQRQAIPAVLEGGDLLASAQTGTGKTAGFTLPMLQRL-ADGKR--PAK 71

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             + AL + PTRELA QVG  +        +   V  GGV    +   ++ G  I+V TP
Sbjct: 72  RGVRALVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDAIRPGLDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 132 GRLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKRQNLLFSATFSNE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I TLA         + +A  N     ++     V    + + + ++++       +VF  
Sbjct: 192 IQTLANQLLDRPTLIEVARRNTTAETVEQAVYRVDREKKRDLLAHLIQSQRWFQVLVFTR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AARG+D+ +
Sbjct: 252 TKHGANRLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQVLVATDIAARGLDIDE 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV- 368
           L  V++ EL +  E+ +HR GRTGRAG +G +V ++      + +  E+L +   V  + 
Sbjct: 312 LPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHGLLKNIEKLIKRDLVKHIE 371

Query: 369 --WEPAPSVE 376
             +EP P+ +
Sbjct: 372 PGFEPDPNAK 381


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 181/343 (52%), Gaps = 9/343 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P V G  ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKSFGFHPAVSG-GVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L   E  R        AL IAPTRELA Q+      L  +T +      GGV V+ + +
Sbjct: 62  RLQQGERGRVR------ALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQ 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VV  PGRL DHI    +++S L+ +VLDEAD+M D+GF  DI  +L   P +
Sbjct: 116 KLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSR 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  LA+    D V V + +     + + +    V    +   ++ +L
Sbjct: 176 RQTLLFSATMPIDIRALAQEILVDPVTVQVGNVAPAVT-VAHALYPVEQHLKTPLLLELL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +
Sbjct: 235 RHTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ATD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G
Sbjct: 295 ATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSG 337


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 191/376 (50%), Gaps = 28/376 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ + L    Y   T VQ+  +     ++D++  AQTGSGKT AF L   S L  +   
Sbjct: 264 EIVDDNLESCKYTVPTPVQKYAIPIIQSKRDLMACAQTGSGKTAAFLLPTLSQLYTKGPG 323

Query: 69  FSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            S  +            PLAL ++PTRELA Q+  E      ++ V   V  GG  V  +
Sbjct: 324 ESLKATTSHQRGRRKLFPLALVLSPTRELASQIYDEARKFAYRSHVRPCVVYGGADVGAQ 383

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
            RDL  G HI+V TPGRL D I    + + +++ V+LDEAD MLD+GF   I  I++ S 
Sbjct: 384 MRDLDRGCHILVATPGRLVDFIERGKVGLCYIRFVILDEADRMLDMGFEPQIRRIVEQSD 443

Query: 177 ---PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                +R+ LMFSAT    I  LA+++  + + + +       ++I  + V V   ++  
Sbjct: 444 MTHKGERQTLMFSATFPKEIQILARDFLNNYIFLAVGRVGSTSTNITQKVVWVDEEEKHK 503

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +++++    +K+  ++F  T+       + L    ++  ++ G+ +Q+ER  AL   R 
Sbjct: 504 FLLDLVNATDSKSLTLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLAFRT 563

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + +AT VAARG+D+P++  VI+ +L S+ +  +HR GRTGR G  G+         
Sbjct: 564 GEYPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIGL--------- 614

Query: 353 QRRAERLFREANVSVV 368
              A   F   NV++V
Sbjct: 615 ---ATSFFNNKNVNIV 627


>gi|297792439|ref|XP_002864104.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309939|gb|EFH40363.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 185/353 (52%), Gaps = 11/353 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +    L E +
Sbjct: 150 PRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQE-E 208

Query: 68  RFSPASA---PLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRER 118
              P +A   P+ L + P+RELA Q    +E   A         +   +CIGG+ +  + 
Sbjct: 209 MMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQL 268

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI  + D    
Sbjct: 269 EVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKS 328

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++  
Sbjct: 329 QRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 388

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +   ++FC  +A V    + L     + VA+ G   Q++R  A+   + G+  V 
Sbjct: 389 LQ-KTSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVL 447

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 448 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKN 500


>gi|164662887|ref|XP_001732565.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
 gi|159106468|gb|EDP45351.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
          Length = 542

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 193/346 (55%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   G+  +T VQE  + P L  KDVL +AQTGSGKT+AF +     L  +  +F P 
Sbjct: 49  KALDAMGFKTMTEVQERCIPPLLAGKDVLGAAQTGSGKTLAFLIPAIEML--QRLKFKPR 106

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   A+ I+PTRELA+Q+    + L A     + + +GG +   E   LQ G ++++ TP
Sbjct: 107 NGTGAIVISPTRELALQIFGVAKELMAHQSQTLGIIMGGANRKAEADKLQKGVNLIIATP 166

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATIS 190
           GRL DH++  KG   ++LK +++DEAD +L++GF D++  I+   P++ R+ ++FSAT +
Sbjct: 167 GRLLDHLQNTKGFVFTNLKTLIIDEADRILEIGFEDEMRQIVKILPQEHRQTMLFSATQT 226

Query: 191 PAITTLAK-NYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             +  LA+ + +   + +N+  +      S ++   V+     R   +   L+ +  K  
Sbjct: 227 TKVQDLARISLRPGPLYINVHEQMAASTVSKLEQGYVVCDSDKRFLLLFTFLKRNAGKKI 286

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF ++  SV    ++L      V+ L G+  QQ+RSN      +  +   + TDVAARG
Sbjct: 287 IVFMNSCNSVKFHGELLNYIDVPVLDLHGKQKQQKRSNTFFEFCNAESGTLLCTDVAARG 346

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           +D+P ++ +I  +   +P + +HR GRT R G+ G S +F++P  +
Sbjct: 347 LDIPAVDWIIQYDPPDDPRDYIHRVGRTARGGKHGRSLLFLLPSEL 392


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 1/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S ++    L 
Sbjct: 21  YQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVS-SNRVRVLV 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGRL D  
Sbjct: 80  LVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLN 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT S  I  +A N
Sbjct: 140 RQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSATFSDDIRAMAAN 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           + +  V ++++  N   S I    V V   ++ +  ++++  +   +A+VF  TR  V  
Sbjct: 200 FLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAENNWDHALVFVKTRTGVDY 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
              +L E  + V  + G+  Q  R  AL+  + G+  + +ATDVAARG+D+  L LVI+ 
Sbjct: 260 LAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHMLVATDVAARGLDIDHLPLVINV 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 320 DLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|307331285|ref|ZP_07610408.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883097|gb|EFN14160.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 565

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G      +Q A +   +  KD+L   +TGSGKT++FGL L +TL   
Sbjct: 69  GLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLTTLAGG 128

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 129 H---TEKKRPRGLILTPTRELAMQVSDALQPYGDILGLKLKVVCGGTSMGNQIYALERGV 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+F
Sbjct: 186 DILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L K Y  D V   + S     + + +  ++V   D+      I    G  
Sbjct: 246 SATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVVKPKDKAPVTAAIAARKG-- 303

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 304 RTIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 363

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V
Sbjct: 364 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGV 423


>gi|171677075|ref|XP_001903489.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936605|emb|CAP61264.1| unnamed protein product [Podospora anserina S mat+]
          Length = 580

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 195/352 (55%), Gaps = 15/352 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 102 NLSERTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--H 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + RF P +    + + PTRELA+Q   V REL   +++T     VCIGG +   E   L 
Sbjct: 160 SLRFKPRNGTGVIVVTPTRELALQIFGVARELMKHHSQT---YGVCIGGANRRAEADKLG 216

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRR 181
            G ++++ TPGRL DH++       +LK++++DEAD +L++GF D++  I+   PK +R+
Sbjct: 217 KGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDERQ 276

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVN 237
            ++FSAT +  +  LA+ + +   + +N+  E +Q+S    +D   V+V    R   + +
Sbjct: 277 TMLFSATQTTKVEDLARISLRPGPLYINV-DEEKQYSTVEGVDQGYVIVDADKRFLLLFS 335

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+    K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +     
Sbjct: 336 FLKKMSKKKVIVFFSSCNSVKYYSELLQYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGT 395

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVI 348
            I TDVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +
Sbjct: 396 LICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFL 447


>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388 [Aureococcus anophagefferens]
          Length = 589

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/363 (33%), Positives = 189/363 (52%), Gaps = 28/363 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLLAENDRFS 70
           A+ + GY   + +Q   +   L  +D++  A+TGSGKT AF + +    S L A      
Sbjct: 190 AIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYISKLPAARIASL 249

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PLAL +APTRELA Q+  E + L A   + V   +GG+S+  +   L+ G  I+VG
Sbjct: 250 ADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAFVLREGVEIIVG 309

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----------DSSPKK 179
           TPGR+ D +  + L ++    VVLDEAD M+D+GF   +  IL           D   ++
Sbjct: 310 TPGRIQDCLDTQYLVLNQANYVVLDEADRMIDMGFEPQVHSILEEMGGLLLSEDDIEMEQ 369

Query: 180 RRM------------LMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLV 226
           +R+             MFSAT+  A+  LAK + +    V I  E+  ++  I    + +
Sbjct: 370 QRLAVQRGEACYRITAMFSATMPSAVEKLAKKFLRHPAIVCIGDEDSGKNKRIAQHVLYI 429

Query: 227 ALSDRDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           A + + NA+V+ILR   A++  +VFC+ +       KVL+    +   L G  +Q+ R  
Sbjct: 430 AEAAKKNAVVDILRKKKAQDKYLVFCNEKKGCDALAKVLSTAGLRSSVLHGGKTQEHRDA 489

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   + G   V +ATDVA RG+D+PD+  V++ ++    EN  HR GRTGRAG+ G++ 
Sbjct: 490 TLAAYKAGSVTVLVATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRIGRTGRAGKDGVAT 549

Query: 346 FVI 348
            ++
Sbjct: 550 TLL 552


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 179/342 (52%), Gaps = 5/342 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   + + G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 125 FPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLP-AVVHINNQ 183

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   +  P+AL +APTRELA Q+ +      ++  V      GG     + RDL+ G  
Sbjct: 184 PRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQPQSRDLERGVE 243

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 244 IVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQIRPDRQVLMWS 303

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA----LSDRDNAIVNILRYH 242
           AT    +  LA+ +  + +++NI S     +    + V V      +++ N ++  +   
Sbjct: 304 ATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKLNKLLGEISSE 363

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR+ + +ATD
Sbjct: 364 KDTKTIIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRNGRSSILVATD 423

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +
Sbjct: 424 VAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTA 465


>gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 421

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 186/343 (54%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQVI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T +Q   + P L  +DV+  A TG+GKT A+ L L   L  E         P+ L 
Sbjct: 23  FASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVERLAGER-------GPVGLV 75

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL +Q+ +E  +     G+  AV  GG  +  +   L+    +V+ TPGRL D +
Sbjct: 76  LAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQRPTLVLATPGRLADLL 135

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +    N+S ++ +VLDEAD  L++GF  +++ IL + P++R+ L+FSAT+   +T  A+ 
Sbjct: 136 KEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTLLFSATLGHNVTRFAQE 195

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRAS 256
             +  VRV +       +    R   V  S++   ++++L    AK+    +VF  TR  
Sbjct: 196 VLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLL----AKDQLSVLVFTRTRER 251

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +  +VL     +  A+  + +Q +R  AL+  R G+ R  +ATD+A+RG+D+ D+  V
Sbjct: 252 AEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVATDIASRGLDVEDIGHV 311

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAERLFREANVSVVWEPAP 373
           I+ +L   PE+ +HR GRT RAG  G  S FV  ++ +  R  ER+ R +         P
Sbjct: 312 INFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIERIVRMS--------LP 363

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             E  RE        DP+F++ ++  +    D  L K
Sbjct: 364 RAEVPRE--------DPVFVEELEEFQAGQEDAELTK 392


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 5/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    + +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  A   +A 
Sbjct: 126 NFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYMLP-AFVHVAA 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+ L +APTRELAVQ+ +E    +     + + CI GG     + RDLQ G
Sbjct: 185 QPRLVQGDGPIVLVLAPTRELAVQI-QEEGLKFGSPANIRSTCIYGGAPKGPQIRDLQRG 243

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L 
Sbjct: 244 VEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLY 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           +SAT    +  LA+ +  +A +V I S + + +  I+    ++   ++ N ++ +L+   
Sbjct: 304 WSATWPREVEILARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKLLKEVM 363

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + GR+ +  ATD
Sbjct: 364 DGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAIMTATD 423

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+ D++ VI+ +  S+ E+ +HR GRTGRAG +G +      +  + A  L R
Sbjct: 424 VAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTDSNAKFARGLIR 482


>gi|167911540|ref|ZP_02498631.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 112]
          Length = 337

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 20/315 (6%)

Query: 71  PASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           P + P  L + PTRELA+QV       G+ L  L   +       +GGV+  ++   L  
Sbjct: 1   PVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ILGGVAYGQQLMLLAK 54

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DDI+ I+ ++P  R+ +
Sbjct: 55  NPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTM 114

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYH 242
           +FSAT+   I +L     KD  R+ I  +    S+I      V   D +D  + ++LR  
Sbjct: 115 LFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDV 174

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+    +    LA+  FQ  AL G+L Q  R+  ++ +R+ R RV +ATD
Sbjct: 175 ALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATD 234

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERL 359
           VAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V ++    Q   +R ER 
Sbjct: 235 VAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERF 294

Query: 360 FR---EANVSVVWEP 371
            R     NV   +EP
Sbjct: 295 VRAPLPVNVVEGFEP 309


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/332 (31%), Positives = 177/332 (53%), Gaps = 8/332 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D +  AQ+G GKT  F + +   +     +        AL
Sbjct: 70  GFEKPSAIQQRAIMPLIQNRDTIAQAQSGMGKTATFSIGVLQNIDTSVRKVQ------AL 123

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + ++ L     +    CIGG  V  + R  Q+   H+VVGTPGR+ D
Sbjct: 124 ILAPTRELAQQIHKVVQTLSDFMSISCHACIGGTRVMEDVRVFQSETPHVVVGTPGRVFD 183

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L+   +KA  LDEADEML  GF++ I  I    P   ++ +FSAT+   +  + 
Sbjct: 184 MIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPATCQVGLFSATMPDDVLEMT 243

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           + + +D +R+ +  +      I    V V   D +   + ++        +I++ +TR  
Sbjct: 244 QKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKLETLCDLYETLNITQSIIYTNTRRK 303

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      + E  F V +L G++ Q++R   ++  R G  RV I TD+ ARGID+  + LV
Sbjct: 304 VEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRVLITTDLLARGIDVQQVSLV 363

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +L +N EN +HR GR+GR GRKG+++  I
Sbjct: 364 VNYDLPTNKENYIHRIGRSGRFGRKGVAINFI 395


>gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
 gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
          Length = 464

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 174/338 (51%), Gaps = 4/338 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL    Y   T +Q+  +   L  +++L +AQTG+GKT AFGL L   L     +  
Sbjct: 12  ITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLIERL--SQGKTE 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+ +APTREL VQV   L    A   + V    GGV +  +++ L  G  I+V 
Sbjct: 70  RKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQALIAGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +    ++ +VLDEAD MLD+GF + I  ++   P  R+ L+FSAT+S
Sbjct: 130 TPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQNLLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LAK    D V + IA  +++  +I    V V    +   + ++++    + A++F
Sbjct: 190 PRIRELAKTAVPDPVEIAIAKPSKK--EISQWLVTVDKDTKSALLSHLIQTEQWQQALIF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  R   L   +DG  +  +AT VAARGID+
Sbjct: 248 IETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVATGVAARGIDV 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             LE V++ +L   P+  +HR GRTGRAG  G +V ++
Sbjct: 308 DKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLL 345


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 183/331 (55%), Gaps = 12/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  +Q+G+GKT  F ++ +  LL EN R         L
Sbjct: 15  GFEKPSAIQQRAIRPIIRGRDVIAQSQSGTGKTAVFSVS-SLQLLQENSRECQV-----L 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            ++PTRELA Q  + ++ L     V    CIGG S+ ++   L+ G   I+ GTPGR+ D
Sbjct: 69  ILSPTRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALEKGGIQIISGTPGRVFD 128

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            IR   L+ +HLKA++LDEADEML+ GF++ I  I    P   ++++ SAT+  ++  + 
Sbjct: 129 LIRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLMSATLPASVLDMT 188

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
           + +  D +R+ +  +      I  R   + +   +   + + ++        A++FC+T+
Sbjct: 189 RKFMNDPIRILVRRDELTLEGI--RQFFINVEKEEWKFDTLCDLYDTLTITQAVIFCNTK 246

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      + +  F V A+ G++ Q  R   ++  R G +RV IATD+  RGID+  + 
Sbjct: 247 QKVDWLAGKMKDKNFTVSAMHGDMDQGARDAVMEEFRSGSSRVLIATDLWGRGIDVQQVS 306

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI  +L +N E  +HR GR+GR GRKG+++
Sbjct: 307 LVICYDLPTNRELYIHRIGRSGRFGRKGIAI 337


>gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 421

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
 gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
          Length = 705

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 186/350 (53%), Gaps = 6/350 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + +    + +   T +Q    +  +  +D++  A+TGSGKT+A+ L  A   ++  
Sbjct: 111 FPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP-ALVHISNQ 169

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    P+AL +APTRELA Q+ +  +    + G+      GG S + +  DL+ G  
Sbjct: 170 PRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESDLRRGVE 229

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 230 IVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLMWS 289

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT    I  LA+ + +D +++NI S N   ++   + +      +++N +  +L    ++
Sbjct: 290 ATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKLLEQISSQ 349

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    I+F  T+  V +   V+    ++   + G+ SQ++R   L   R     + +ATD
Sbjct: 350 NDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTNGILVATD 409

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           VA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S  F  P N
Sbjct: 410 VASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPAN 459


>gi|193683325|ref|XP_001948746.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Acyrthosiphon pisum]
          Length = 985

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 192/367 (52%), Gaps = 7/367 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 324 IMDNLKKHNYEKPTPIQTQAIPAIMAGRDLIGIAKTGSGKTLAFLLPMFRHIM-DQPPLE 382

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ +APTREL +Q G+E        G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 383 DTDGPIAIVMAPTRELCMQTGKEARKFTKSLGLRVVSVYGGTGISEQIAELKRGAEIIVC 442

Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +    G+  N+  +  VVLDEAD M D+GF   +  ++D+    R+ +MFSA
Sbjct: 443 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRVIDNVRPDRQTVMFSA 502

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKN 246
           T    +  LA+   +  V V I   +    +++   ++V    +   ++ +L  Y+   +
Sbjct: 503 TFPRQMEALARRILQKPVEVQIGGRSVVAKEVEQHVIIVEEEQKFMKLLEVLGVYYERGS 562

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T  +     + L +  +  ++L G + Q +R + +   + G+ ++ +AT VAAR
Sbjct: 563 CIVFVDTHENADTLLQKLLKASYPCMSLHGAIDQYDRDSTIVDFKSGQIKLLVATSVAAR 622

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL LV++ +  ++ E+ +HR GRTGRAG KG +  ++  + +R A  L R    S
Sbjct: 623 GLDVKDLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTLVSPDQERFAGDLIRALETS 682

Query: 367 VVWEPAP 373
            V  P P
Sbjct: 683 NV--PVP 687


>gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 402

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 198/387 (51%), Gaps = 20/387 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I  A+   G+   T +QE  +   +  +DV  +A+TGSGKT AF + L   LL E D
Sbjct: 10  PDIIA-AVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLLHQLL-EKD 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R         + +APTREL +Q+    + + AK  + +    GGV    +   L    HI
Sbjct: 68  R----PEKYGIILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQLAKRPHI 123

Query: 128 VVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V TPGRL   IR  KG ++  ++ +V+DEAD+M  + F DDI  I  +  K  ++++FS
Sbjct: 124 IVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCAKTHQIMLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +      Y K A  V + SE +    +    +    S ++  +V +L +     
Sbjct: 184 ATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTSPKSQKEATLVALLHHFETSQ 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F S     +  T  L +  F V + +G +SQ +R   +Q  R+ + R+ +AT V  R
Sbjct: 244 IIIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIRILVATKVVGR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE---RLFRE 362
           G+D+P++++V++ +L  N +  +HR+GR GRA + G+++ FV  +++Q+  +    L RE
Sbjct: 304 GVDIPNIDVVVNYDLPDNGKEYIHRAGRAGRALKSGIAITFVTMESLQKYQDLEKYLKRE 363

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD 389
                     P  E  +E+  Q I +D
Sbjct: 364 ---------LPKFEFDKEKKIQEISKD 381


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/361 (34%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+ +G      +Q A L   L  +D L   +TGSGKT+AFGLAL +    +
Sbjct: 81  DMPKQLLATLTAQGVSVPFPIQGATLPNTLAGRDALGRGRTGSGKTLAFGLALLARTAGQ 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 141 --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQANVLRGGA 197

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 198 EVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 256

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+      I    G 
Sbjct: 257 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHRTTTEIAAREG- 315

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 316 -RVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 374

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL   A 
Sbjct: 375 ARGIHVDDLDLVVNIDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTRLMTAAG 434

Query: 365 V 365
           +
Sbjct: 435 I 435


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 185/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 135 FPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 193

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 194 PLLGPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLSRGV 252

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 253 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 312

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++V I S++    H       ++     RD  I ++ R   
Sbjct: 313 SATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMD 372

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 373 DKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 432

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 433 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 490


>gi|312384402|gb|EFR29139.1| hypothetical protein AND_02178 [Anopheles darlingi]
          Length = 819

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 173/317 (54%), Gaps = 13/317 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---LASTLLAENDRFSPASAP 75
           G+   +++Q+  + P +  +DV+  AQ+G+GKT  F +A   L  T L E          
Sbjct: 206 GFEKPSAIQQRAITPCIAGRDVIAQAQSGTGKTATFSIAILQLIDTSLNECQ-------- 257

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G HIVVGTPGR+
Sbjct: 258 -ALILAPTRELASQIQKVVISLGDFLKAQCHACIGGTNVRDDMRRLEQGCHIVVGTPGRV 316

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I    L  S++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  
Sbjct: 317 HDMISRNVLRTSNIKLFVLDEADEMLSRGFKDQIQDVFRKLPSDVQVILLSATMPADVLE 376

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +++++ +D V++ +  E      I    V V   D +   + ++        A++FC+TR
Sbjct: 377 VSQHFMRDPVKILVKKEELTLEGIKQFYVDVKFEDWKLGTLCDLYDTLSITQAVIFCNTR 436

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V + T+ + E  F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 437 RKVDQLTEEMTEKTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVS 496

Query: 315 LVIHAELSSNPENLLHR 331
           LVI+ +L +  EN +HR
Sbjct: 497 LVINYDLPTLRENYIHR 513


>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 451

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 182/351 (51%), Gaps = 7/351 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P   ++ +A    GY  LT VQ  ++   L  +D++  AQTG+GKT AF   L   
Sbjct: 3   FDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL +       SA   L + PTRELA+QV   +      T +      GG +++ +R+ L
Sbjct: 63  LLNQPRAIGQLSA---LILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D +    L++  +  +++DEAD MLD+GF  DIE           
Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT +P +  LA     +   +N+ S +     I+ +   +    +   +  ++  
Sbjct: 180 TMLFSATFTPEVKALATKMLDNPEWINVTSAS-SGPQIEQKIYPLDARRKAELLAELIGR 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF +T+ S  R  + L     +     G+ +Q  R+ AL+  + G  RV +AT
Sbjct: 239 NNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           DVAARG+D+  L LVI+ EL   P++ +HR GRTGRAG  G+S+ FV  Q+
Sbjct: 299 DVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQD 349


>gi|320009868|gb|ADW04718.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 522

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 189/360 (52%), Gaps = 13/360 (3%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +Q A L   L  +DVL   +TGSGKT+AFGLAL   L       + A  PLAL + PTRE
Sbjct: 107 IQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTAGNRADARRPLALVLVPTRE 163

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV   L        + +A  +GG+S+ R+   L+ GA +VV TPGRL D I      
Sbjct: 164 LAQQVTDALTPYARSLRLRLATVVGGMSIGRQASALRGGAEVVVATPGRLKDLIERGDCK 223

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDA 204
           +  +   VLDEAD+M D+GF   +  +LD  +P+ +RML FSAT+   +  L + Y  D 
Sbjct: 224 LDRVAITVLDEADQMADMGFMPQVTELLDQVNPEGQRML-FSATLDRNVDLLVRRYLHDP 282

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V  ++       + +++  + V  +D+      I    G    I+F  T+ +V + T  L
Sbjct: 283 VVHSVDPAAGAVTTMEHHVLYVQGADKYATTTEIAARDG--RVIMFLDTKHAVDKLTDHL 340

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
                +  AL G  SQ +R+  L   + G   V +AT+VAARGI + +L+LV++ +  S+
Sbjct: 341 LSSGVRAAALHGGKSQPQRTRTLDRFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPSD 400

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
            ++ LHR GRT RAG  G  V ++  N +R   RL  +A ++      P V  +R  +A+
Sbjct: 401 HKDYLHRGGRTARAGESGSVVTLVLPNQRRDMTRLMADAGIT------PQVAQVRSGEAE 454


>gi|239940491|ref|ZP_04692428.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239986972|ref|ZP_04707636.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291443920|ref|ZP_06583310.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346867|gb|EFE73771.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 539

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 191/372 (51%), Gaps = 26/372 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L   
Sbjct: 88  DMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LART 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S   APLA+ + PTRELA QV   L        + +A  +GG+S+ ++   L+ GA
Sbjct: 145 AGRRSEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRGA 204

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       + ++F
Sbjct: 205 EVLVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFMPQVVALLKQVEADGQRMLF 264

Query: 186 SATISPAITTLAKNYQKDAVRVNI-----ASENRQH------SDIDYRAVLVALSDRDNA 234
           SAT+   I  L K +  D V  ++     A    +H       + D +AV   ++ RD  
Sbjct: 265 SATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHVLHVLDETDKKAVATKIAARDGR 324

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +            I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+
Sbjct: 325 V------------IMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQ 372

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +AT+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R
Sbjct: 373 VTALVATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKR 432

Query: 355 RAERLFREANVS 366
              RL ++A ++
Sbjct: 433 EMTRLMQDAGIA 444


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 129 FPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 188 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLTRGV 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 247 EVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 306

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++ +D ++V I S++    H       V+     RD  I ++ R   
Sbjct: 307 SATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIME 366

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 367 DKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 426

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +      ++A  L +
Sbjct: 427 DVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQARDLVK 486


>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1173

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 191/340 (56%), Gaps = 14/340 (4%)

Query: 19   GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
            G+   +++Q   +   L  +D+L SA+TG GKT AF L + S L  +           A+
Sbjct: 679  GFKAPSNIQYNTIPAILSGRDILASAKTGQGKTAAFALPILSALSED------PYGIFAV 732

Query: 79   AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
             + PTRELAVQ+G +   L +   V   V IGG+   ++   L    HI+V TPGRL  H
Sbjct: 733  VLTPTRELAVQIGEQFRALGSAINVNCCVVIGGIDNVQQSLILDKRPHIIVATPGRLAAH 792

Query: 139  IR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  G  L +   + +VLDEAD ML   F  +++ I++  P K + L++SAT++ +   L 
Sbjct: 793  LNNGMKLALQFCRFLVLDEADRMLGPDFELEVQKIVEHLPPKIQTLLYSATMTNSNKKLE 852

Query: 198  KNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
                K+     I  +N ++  ++  +   V +    +D  +V +L+ H + + IVF +  
Sbjct: 853  SIPIKNPY---IFEDNNKYDTVETLSQYYVFMPAQAKDCHLVYLLKKHDSSSVIVFINNC 909

Query: 255  ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             +V     +L +   + V+L   LSQ++R NAL+  + G+ RV IATDVA+RG+D+PD++
Sbjct: 910  RTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIATDVASRGLDIPDVQ 969

Query: 315  LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +VI+ +LS++ ++ +HR GRT R GR G ++ FV P +++
Sbjct: 970  MVINYKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVE 1009


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T +Q   + P L  +DV+  A TG+GKT A+ L L   L  E         P+ L 
Sbjct: 50  FASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVERLAGER-------GPVGLV 102

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL +Q+ +E  +     G+  AV  GG  +  +   L+    +V+ TPGRL D +
Sbjct: 103 LAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQRPTLVLATPGRLADLL 162

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +    N+S ++ +VLDEAD  L++GF  +++ IL + P++R+ L+FSAT+   +T  A+ 
Sbjct: 163 KEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTLLFSATLGHNVTRFAQE 222

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRAS 256
             +  VRV +       +    R   V  S++   ++++L    AK+    +VF  TR  
Sbjct: 223 VLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLL----AKDQLSVLVFTRTRER 278

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +  +VL     +  A+  + +Q +R  AL+  R G+ R  +ATD+A+RG+D+ D+  V
Sbjct: 279 AEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVATDIASRGLDVEDIGHV 338

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG-MSVFVIPQNMQ--RRAERLFREANVSVVWEPAP 373
           I+ +L   PE+ +HR GRT RAG  G  S FV  ++ +  R  ER+ R +         P
Sbjct: 339 INFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIERIVRMS--------LP 390

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             E  RE        DP+F++ ++  +    D  L K
Sbjct: 391 RAEVPRE--------DPVFVEELEEFQAGQEDAELTK 419


>gi|302535753|ref|ZP_07288095.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302444648|gb|EFL16464.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 694

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 188/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L + G  +   +Q A +   L  KD+L   +TGSGKT++FGL    TL    
Sbjct: 66  LPEGVVRKLGQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLARLA 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 123 DGHTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 183 VLVATPGRLRDIINRGACSLENVEVAVLDEADQMADLGFLPEVTELLDQVPAGGQRMLFS 242

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 243 ATMENEIGTLVKRYLSNPVSHEVDSAQGNVTTMTHHVLVVKPKDKAPVTAAIAARKG--R 300

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 301 TIIFVRTQLGADRIAEQLIEAGVKADALHGGMTQGARTRVLADFKDGYVNALVATDVAAR 360

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V
Sbjct: 361 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGV 419


>gi|300706327|ref|XP_002995439.1| hypothetical protein NCER_101659 [Nosema ceranae BRL01]
 gi|239604545|gb|EEQ81768.1| hypothetical protein NCER_101659 [Nosema ceranae BRL01]
          Length = 461

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 188/347 (54%), Gaps = 17/347 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E L +  YV +T VQ+  L   L  KDV+V +QTGSGKT++F L +    L +   +
Sbjct: 15  IIKEVLQKNNYVYMTDVQQKTLPHMLNNKDVVVQSQTGSGKTLSFVLPIIHNYLKQITFY 74

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              S    + I PTRELA+Q+      ++    V     IGG+ +  +  ++     I+V
Sbjct: 75  KDFSV--CIVITPTRELALQITD----VFKMFNVPTKCFIGGLDIDDDLIEITKDYKIIV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + I+      S L  +VLDEAD+++DLGF++ +  I+   PK +    FSATI
Sbjct: 129 GTPGRLLEVIKLNTKLFSRLSYLVLDEADKLIDLGFKEKVLNIVSFLPKSKSCGFFSATI 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAI 248
           +  +  L+K   K+ + V       + S+I  +  +  L  +  + ++  L     K +I
Sbjct: 189 NENVKNLSKLILKNPIFV-----KSEGSEIPNKLKICYLKTKYSDKLLTTLDLIKNKKSI 243

Query: 249 VFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQ-MMRDGRARVCIATDVAAR 306
           VF +T   V  F K L + ++  V  +  ++ Q++R+N  +     G   +C  TD+AAR
Sbjct: 244 VFFATCNQVDFFYKFLIKFNIKNVYKIHRKMKQEDRTNVYKDFFEKGDVLLC--TDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           GID  ++ELVIH ++  +  N++HRSGRT R G++G S+ FV+P  +
Sbjct: 302 GIDFKNIELVIHFDIPKDYTNIVHRSGRTARNGKEGESILFVLPNEL 348


>gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
 gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
          Length = 439

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 194/345 (56%), Gaps = 13/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+E  +V  T VQ A + P L   D+ V A+TGSGKT AF L L + L+ +     P 
Sbjct: 13  KALAELNFVEPTPVQAAAIPPALEGHDLRVIARTGSGKTAAFVLPLLNGLIGDA---RPR 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +  AL + PTRELA Q  +E+E     T +   +  GG +   +   L+    I++GTP
Sbjct: 70  VSIRALILLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRKVPDILIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI--S 190
           GRL +H+    L++  ++ +VLDEAD MLD+GF +D++ +++S   +R+ L+FSAT   S
Sbjct: 130 GRLLEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTLLFSATTGGS 189

Query: 191 PAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKN 246
                +AK  ++   + +N   E  + +    R  +V   D   ++  +  +L     + 
Sbjct: 190 GLREMVAKVLREPRHLMLNAVGELSETT----RQQIVTADDPAHKERLVHWLLENETYRK 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +TRA   R    L     +   L GE  Q++R  A++ +R G ARV +ATDVAAR
Sbjct: 246 AIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+  L+LVI+ ++  + +  +HR GRTGRAG +G++V +I  N
Sbjct: 306 GLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAGAEGLAVSLICHN 350


>gi|85091492|ref|XP_958928.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
 gi|74696328|sp|Q7S2N9|HAS1_NEUCR RecName: Full=ATP-dependent RNA helicase has-1
 gi|28920320|gb|EAA29692.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
          Length = 578

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 199/358 (55%), Gaps = 21/358 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
           N+     +A++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF    + + S+L
Sbjct: 113 NLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLSSL 172

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                RF P +   A+ + PTRELA+Q   V REL   +++T     V IGG +   E  
Sbjct: 173 -----RFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQT---YGVVIGGANRRAEAE 224

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G ++++ TPGRL DH++       +++++++DEAD +L++GF D++  I+   PK+
Sbjct: 225 KLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKE 284

Query: 180 -RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNA 234
            R+ ++FSAT +  +  LA+ + +   + VN+  E +Q S +   D   V+V    R   
Sbjct: 285 DRQTMLFSATQTTKVEDLARISLRPGPLYVNV-DEEKQFSTVEGLDQGYVVVDADKRFLL 343

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+    K  IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      + +
Sbjct: 344 LFSFLKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAK 403

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQN 351
               I TDVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +  N
Sbjct: 404 QGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPN 461


>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 467

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 191/370 (51%), Gaps = 7/370 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E+GY   + +Q   +   L  +D++ +AQTG+GKT  F L +   L+    + SP  
Sbjct: 15  AVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLMESKRKVSPNR 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +        +   V  GGVS++ +    + G  ++V  PG
Sbjct: 75  I-RALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRRGLDVLVACPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FSAT +  I
Sbjct: 134 RLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKQRQNLLFSATFAEEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRYHGAKNAIVF 250
             LA     +   + +A  N     I+    LV   D+ N I    +++  +  +  +VF
Sbjct: 194 RELATGLLNNPAVIEVAPRNSTAERIEQ---LVHPCDKANKIGLLSHLVTSNDWQQVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AARG+D+
Sbjct: 251 TRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVKVLVATDIAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    ++  E
Sbjct: 311 DKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQNIPCE 370

Query: 371 PAPSVEAIRE 380
                EA RE
Sbjct: 371 QVAGFEASRE 380


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 180/348 (51%), Gaps = 18/348 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA-----------PLALAIAPTREL 86
           +D++  AQTGSGKT  F   + S          PA+A           P +L +APTREL
Sbjct: 224 RDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTREL 283

Query: 87  AVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
             Q+  E      ++ V   V  GG  +  + R ++ G  ++V TPGRL D I    +++
Sbjct: 284 VSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISL 343

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQK 202
            ++K +VLDEAD MLD+GF   I  I++       + R+ LMFSAT    I  LA+++ K
Sbjct: 344 QNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLK 403

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D + +++        +I  +   V   D+ + +++IL  H     ++F  T+      + 
Sbjct: 404 DYIFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHSHANGLTLIFVETKRMADSLSD 463

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L    F   ++ G+ +Q+ER  AL+  R+GR  + +AT VAARG+D+P +  VI+ +L 
Sbjct: 464 FLINQNFPATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHVTHVINYDLP 523

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
           ++ ++ +HR GRTGRAG  G++        + + R    L +EAN  V
Sbjct: 524 TDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMDLLKEANQEV 571


>gi|308276378|gb|ADO26277.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 450

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 131/393 (33%), Positives = 197/393 (50%), Gaps = 17/393 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   L+ +G      +QEA +   L+ +DVL    TGSGKT  FGL + + L A+ 
Sbjct: 9   LPVSIVHVLNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAAL-AKT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P  L + PTRELA QV   L+   A  G+ +   +GGVS++R          
Sbjct: 68  GASLPGH-PRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAAPVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR  D +  K L +  +    LDEAD+M D+GF   +  +L+ +P+  + L+FS
Sbjct: 127 ILVATPGRAQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRLLFS 186

Query: 187 ATISPAITTLAKNYQKDAV-----RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           AT+   +  L + +  D V      V  A +   H    YR   + + DRD+    +LR 
Sbjct: 187 ATLDGDVNKLVERFMHDPVTHSTAEVAAAVDTMTH----YR---LHVGDRDSRNDVVLRI 239

Query: 242 HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            G     I+F  T+  V R  K L       V + G+  Q  R+NA+    DG   V +A
Sbjct: 240 AGRIGKTIMFMRTKHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ D++LV+H +  +  +  LHR+GRT RAG  G  V ++ +   +  + L 
Sbjct: 300 TDIAARGIDIGDVDLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTLL 359

Query: 361 REANVSV--VWEPAPSVEAIRERDAQRILQDPL 391
            +A V+   +   A S E +    AQ+I  +PL
Sbjct: 360 HKAGVNAESLEVSANSPELVHITGAQKITGEPL 392


>gi|226306589|ref|YP_002766549.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226185706|dbj|BAH33810.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 686

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 192/356 (53%), Gaps = 9/356 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ +  AL+ R  + + S  +A   PD L   +VL  AQTGSGKT+AFGL + + L   
Sbjct: 71  LPEQLVAALA-RNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSRH 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G 
Sbjct: 130 EDRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLRRGV 188

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+F
Sbjct: 189 DVLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLLF 248

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L + +  + V  +          +++  +LV    +D+ +  I    GA+
Sbjct: 249 SATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEHYVLLVDRGQKDSVLAEI----GAR 304

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   I+F  T+      T  L        +L G  +Q +R+  L+  ++GR  V +ATDV
Sbjct: 305 DGRTIMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLVATDV 364

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AARGI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R+ +RL
Sbjct: 365 AARGIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRQFKRL 420


>gi|110430646|gb|ABG73436.1| DEAD/DEAH box helicase family protein [Oryza brachyantha]
          Length = 688

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 13/376 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 113 ISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGK 172

Query: 67  DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + S A     P  L + PTRELA QV  + E+  A  G+      GG     +   ++ 
Sbjct: 173 HKASGADYGRPPSVLVLLPTRELAKQVHTDFEFYGATFGLSSCCVYGGSEYRPQEMKIRK 232

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRR 181
           G  IVVGTPGR+ D ++   LN   LK  VLDEADEML++GF DD+E IL       K +
Sbjct: 233 GVDIVVGTPGRVKDFVQKGTLNFKSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQ 292

Query: 182 MLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYR--AVLVALSDRDNAIVNI 238
            L+FSAT+   +  L+  + K   + V++  + +  +    R  A+    + R   I +I
Sbjct: 293 TLLFSATLPDWVGKLSLRFLKPGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDI 352

Query: 239 LR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +R Y      I+F  T+ S S  + ++A       AL G+++Q +R   L   R G+  V
Sbjct: 353 IRCYSRGGRTIIFTETKESASELSGLIAGSR----ALHGDVAQAQREVILAGFRSGKFLV 408

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +     +    
Sbjct: 409 LVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRHKFNVN 468

Query: 358 RLFREANVSVVWEPAP 373
           R+ RE+ V      AP
Sbjct: 469 RIERESGVKFEHISAP 484


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 180/338 (53%), Gaps = 19/338 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 44  YQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 102

Query: 80  IAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + PTRELA QV         G +L +L A          GGVS++ +   L+ G  ++V 
Sbjct: 103 LVPTRELAEQVLQSFVEYGKGLDLRFLAA---------YGGVSINPQMMKLRKGVDVLVA 153

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT S
Sbjct: 154 TPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSATFS 213

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  + A+VF
Sbjct: 214 DEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWERALVF 273

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+
Sbjct: 274 VKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDI 333

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 334 DDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 371


>gi|320582556|gb|EFW96773.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 568

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 200/351 (56%), Gaps = 17/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L +   +F P 
Sbjct: 125 KGIQDMGFTKMTEVQARTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSL--KFKPR 182

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A+ I PTRELA+Q   V REL   +++T   + + IGG +  +E   L  G ++++
Sbjct: 183 NGAGAIVITPTRELALQIFGVARELMAHHSQT---LGILIGGANRRQEAEKLAKGVNLII 239

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
            TPGRL DH++  KG    +LK +++DEAD +L++GF D+++ I+   P +KR+ ++FSA
Sbjct: 240 ATPGRLLDHLQNTKGFIFKNLKTLIIDEADRILEIGFEDEMKQIVKILPNEKRQSMLFSA 299

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           T +  +  LA+ +  K  + +N+  ++R+ S  D       + D D     + + L+ + 
Sbjct: 300 TQTTKVEDLARVSLNKAPLYINV-HQDRETSTADGLEQGYVVCDSDKRFLLLFSFLKRNL 358

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V  ++++L      V+ L G+  QQ+R+N      + +  + I TDV
Sbjct: 359 KKKVIVFLSSCNCVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           AARG+D+P+++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 419 AARGLDIPEVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPSEL 469


>gi|310287881|ref|YP_003939139.1| Superfamily II DNA and RNA helicase [Bifidobacterium bifidum S17]
 gi|309251817|gb|ADO53565.1| Superfamily II DNA and RNA helicase [Bifidobacterium bifidum S17]
          Length = 681

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 26/390 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+ +   L+  G V    +Q   L   L   D+L   QTGSGKT+AF + L + L    
Sbjct: 54  VPKPLVHVLAMDGKVTAFPIQADTLADSLNGVDLLGRGQTGSGKTLAFAIPLVARLSEHS 113

Query: 63  -----LAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
                + E ++   AS             P  L +APTREL  Q+   ++ L    G+  
Sbjct: 114 VTEVAMKEFEQIRKASDEKAAREQASLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMST 173

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GGVS  R+   L+ GA IVV  PGRL D +R   L++  ++  +LDEADEM D+GF
Sbjct: 174 VTVYGGVSYARQVAGLRAGADIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMADMGF 233

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
              +  +L+ +  + + ++FSAT+   +  L K +  DA    ++S   Q   + +    
Sbjct: 234 LPPVTRLLEQTDSRGQRMLFSATLDHGVDALVKRFLSDAKVHAVSSVVSQVDTMTHHVFE 293

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V+  ++ + ++ +L   G    I+F  T+    +  K L +     V L G LSQ++R  
Sbjct: 294 VSQGNK-HEVIRLL-ASGTGKRILFTRTKFQAKKMAKKLIDEGIPAVDLQGNLSQKQRDR 351

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L     G  RV +ATDVAARGID+ D+ LV+  +  ++P++ LHRSGRT RAG +G  V
Sbjct: 352 NLLAFEKGLVRVLVATDVAARGIDVHDVTLVVQTDPPADPKSFLHRSGRTARAGEQGDVV 411

Query: 346 FVIPQNMQRRAERLFREANV---SVVWEPA 372
            ++  N  R   ++ + A +   SV   PA
Sbjct: 412 TLVLPNQARSTRQMMKRAGIRVKSVAITPA 441


>gi|224283855|ref|ZP_03647177.1| Superfamily II DNA and RNA helicase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313141010|ref|ZP_07803203.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133520|gb|EFR51137.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 681

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 26/390 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+ +   L+  G V    +Q   L   L   D+L   QTGSGKT+AF + L + L    
Sbjct: 54  VPKPLVHVLAMDGKVTAFPIQADTLADSLNGVDLLGRGQTGSGKTLAFAIPLVARLSEHS 113

Query: 63  -----LAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
                + E ++   AS             P  L +APTREL  Q+   ++ L    G+  
Sbjct: 114 VTEVAMKEFEQIRKASDEKAAREQASLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMST 173

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GGVS  R+   L+ GA IVV  PGRL D +R   L++  ++  +LDEADEM D+GF
Sbjct: 174 VTVYGGVSYARQVAGLRAGADIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMADMGF 233

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
              +  +L+ +  + + ++FSAT+   +  L K +  DA    ++S   Q   + +    
Sbjct: 234 LPPVTRLLEQTDSRGQRMLFSATLDHGVDALVKRFLPDAKVHAVSSVVSQVDTMTHHVFE 293

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V+  ++ + ++ +L   G    I+F  T+    +  K L +     V L G LSQ++R  
Sbjct: 294 VSQGNK-HEVIRLL-ASGTGKRILFTRTKFQAKKMAKKLIDEGIPAVDLQGNLSQKQRDR 351

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L     G  RV +ATDVAARGID+ D+ LV+  +  ++P++ LHRSGRT RAG +G  V
Sbjct: 352 NLLAFEKGLVRVLVATDVAARGIDVHDVTLVVQTDPPADPKSFLHRSGRTARAGEQGDVV 411

Query: 346 FVIPQNMQRRAERLFREANV---SVVWEPA 372
            ++  N  R   ++ + A +   SV   PA
Sbjct: 412 TLVLPNQARSTRQMMKRAGIRVKSVAITPA 441


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 223 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 282

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 283 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 342

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 343 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 522

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 523 VKGLMEILNEANQEV 537


>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
 gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 186/350 (53%), Gaps = 6/350 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + +    + +   T +Q    +  +  +D++  A+TGSGKT+A+ L  A   ++  
Sbjct: 85  FPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP-ALVHISNQ 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    P+AL +APTRELA Q+ +  +    + G+      GG S + +  DL+ G  
Sbjct: 144 PRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESDLRRGVE 203

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 204 IVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLMWS 263

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT    I  LA+ + +D +++NI S N   ++   + +      +++N +  +L    ++
Sbjct: 264 ATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKLLEQISSQ 323

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           N    I+F  T+  V +   V+    ++   + G+ SQ++R   L   R     + +ATD
Sbjct: 324 NDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTNGILVATD 383

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           VA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S  F  P N
Sbjct: 384 VASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPAN 433


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+ EAL E+ + N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALDEKDFHNCTPIQALALPFALSGRDVAGQAQTGTGKTLAFLTSTFHYLLSH-- 74

Query: 68  RFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+       P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAAEGRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYEKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
            +G  I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ADGVDILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L  +  G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSI 357


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 198/379 (52%), Gaps = 30/379 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E + + GY   T VQ+  +   ++ +DV+  AQTGSGKT AF + L + +L    D  
Sbjct: 117 VQENIRKSGYSKPTPVQKYSIPTLMQRRDVMSCAQTGSGKTAAFLIPLINQILRNGPDAI 176

Query: 70  SP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-R 119
            P         A  P+AL +APTRELA+Q  +E      +T +  A+  GG   +R++  
Sbjct: 177 RPPQLMNNGRRAMFPVALILAPTRELAMQTHKEALKFGYRTNITSAILYGGRENYRDQIN 236

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--P 177
            L+ G HI++ TPGRL D +R   + +     +VLDEAD MLD+GF   I  I++ +  P
Sbjct: 237 KLRIGCHILIATPGRLLDVVRQGYVLLQECTFLVLDEADRMLDMGFEPQIRQIVEQNGMP 296

Query: 178 KK--RRMLMFSATISPAITTLAK-----NYQKDAV-RVNIASENRQHSDIDYRAVLVALS 229
           +K  R   MFSAT    I  LA+     NY   AV RV   SEN     I  + + V   
Sbjct: 297 QKGMRVTAMFSATFPKEIQVLAQDFLLPNYVFLAVGRVGSTSEN-----IIQKVLWVEEH 351

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ N ++ +L     K   +VF  T+   +     L  + + VV + G+L Q ER   L+
Sbjct: 352 EKKNFLMELLDADANKGLTLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFERERHLE 411

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           M R G A V +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G +    
Sbjct: 412 MFRTGEANVLVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVGQATSFF 471

Query: 349 ---PQNMQRRAERLFREAN 364
               +N+ R    L  E+N
Sbjct: 472 NDKNRNLGRDLAELLVESN 490


>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
 gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
          Length = 425

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 175/313 (55%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+    L + D  S      AL
Sbjct: 71  GFEKPSAIQQRAIIPCVKGRDVIAQAQSGTGKTATFSIAI----LQQIDTTSRECQ--AL 124

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 125 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 184

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L    +K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  +++
Sbjct: 185 INRKVLRTQSIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPHDVLEVSR 244

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ V + +  E      I    V V   + +   + ++        +++FC+TR  V
Sbjct: 245 CFMREPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKV 304

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ ++ H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 305 DQLTQEMSNHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 364

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 365 NYDLPSNRENYIH 377


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 187/343 (54%), Gaps = 20/343 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +    
Sbjct: 18  MFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNSKSVIVQAKTGSGKTAAYVIPI---- 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++P+RELA Q+  E++ L     + V++ IGG+S   +R+   
Sbjct: 74  LERN--------STALILSPSRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQ--- 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K   
Sbjct: 123 --SKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAG 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSATI   I TLAK + KD +R  +  E +   ++  + V V  +D ++ +  +L   
Sbjct: 181 F-FSATIPDEIMTLAKEFSKD-LREIVLDEYKPVEEVKQKFVKVR-NDWNDKVSKLLEEI 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 238 NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++
Sbjct: 298 LASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAI 340


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLS--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 74  --NPAPEGRQVNQPRALILAPTRELAVQIHADAEPLTQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSFRVRELAFENMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSI 357


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 179/338 (52%), Gaps = 19/338 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L  +    S   A + L 
Sbjct: 21  YQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLGQQGPAVSSNRARV-LV 79

Query: 80  IAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + PTRELA QV         G +L +L A          GGVSV+ +   L+ G  ++V 
Sbjct: 80  LVPTRELAEQVLQSFIDYGKGLDLRFLAA---------YGGVSVNPQMMKLRKGVDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +
Sbjct: 131 TPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAERQTLLFSATFT 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LA    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF
Sbjct: 191 DDIRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAQNNWEHALVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V     +L E  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+D+
Sbjct: 251 VKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNMLVATDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 311 DDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 177/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +       +      AL
Sbjct: 52  GFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVV------DTSVREVQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     +    CIGG SV  + R L++G H+V GTPGR+CD 
Sbjct: 106 IVSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML  GF+D I  +    P   ++ + SAT+   I  +  
Sbjct: 166 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 226 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 285

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LVI
Sbjct: 286 DWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGTTRVLITTDVWARGLDVQQVSLVI 345

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 NYDLPNNRELYIHRIGRSGRFGRKGVAI 373


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 199/361 (55%), Gaps = 13/361 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + + G+   T +Q       LR +D++  A+TGSGKT+  G  +   +L +  + +    
Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTL--GYLIPGFILLKRLQHNSRDG 303

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P  L ++PTRELA Q+  E +  + ++  + +VC+ GG     + RDL+ GA IVV TPG
Sbjct: 304 PTVLVLSPTRELATQIQDEAK-KFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPG 362

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+AT    +
Sbjct: 363 RLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEV 422

Query: 194 TTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIV 249
             +A +   + V+VNI + ++   +  I     ++   ++   +  ILR    G+K  I+
Sbjct: 423 RKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSK-III 481

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FCST+    +  + LA   +   A+ G+ SQ ER + L   R GR  + +ATDVAARG+D
Sbjct: 482 FCSTKRMCDQLARNLARQ-YGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLD 540

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREANVS 366
           + D+ +V++ +  +  E+ +HR GRTGRAG  G++  F   Q+ +  ++  ++   AN S
Sbjct: 541 IKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQS 600

Query: 367 V 367
           V
Sbjct: 601 V 601


>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 469

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/330 (36%), Positives = 180/330 (54%), Gaps = 10/330 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++  AL   GY + T +Q   +   L  +D+L +AQTG+GKT  F L L   L A  
Sbjct: 9   MPELL-TALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLLQRL-ATT 66

Query: 67  DRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               PA      AL + PTRELA QV   ++    K  +   V  GGV+++ +R  LQ  
Sbjct: 67  PVLHPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQRDRLQRK 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+    +++  ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+
Sbjct: 127 LDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNILRYH 242
           FSAT +P I T A+N   +  +V +A +      ++ R   V   DRD   A++  L   
Sbjct: 187 FSATFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPV---DRDAKKALLQQLIVD 243

Query: 243 GAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G  N + VF  T+   +R  + L +     +A+    SQ  R  AL   + G+ RV +AT
Sbjct: 244 GNWNQVLVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKLRVLVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHR 331
           D+AARGID+  L  V++ EL + PE+ +HR
Sbjct: 304 DIAARGIDIDALPHVVNYELPNVPEDYVHR 333


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 181/338 (53%), Gaps = 19/338 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  +DV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 63  YQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 121

Query: 80  IAPTRELAVQV---------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           + PTRELA QV         G +L +L A          GGVS++ +   L+ G  ++V 
Sbjct: 122 LVPTRELAEQVLQSFIDYGKGLDLRFLAA---------YGGVSINPQMMKLRKGVDVLVA 172

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  R   + +  ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +
Sbjct: 173 TPGRLLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRRQTLLFSATFT 232

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  +A    +D V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF
Sbjct: 233 DDIRAMAAGILRDPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWRHALVF 292

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V     +L    + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D+
Sbjct: 293 VKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLDI 352

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 353 DDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 390


>gi|291299972|ref|YP_003511250.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569192|gb|ADD42157.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 544

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 178/340 (52%), Gaps = 3/340 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I  AL+ERG  +   +Q A +   L  KDVL   +TGSGKT++FGL L  TL  +
Sbjct: 24  GLPPAIVSALAERGVTSPFPIQAATIPDALSGKDVLGRGRTGSGKTLSFGLPLLVTLATD 83

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  P  L + PTRELA+QV   L+       + + V  GG S+ R+   L+NG 
Sbjct: 84  GGR-TQAKRPRGLILTPTRELAMQVADALDPYARILRLDMKVVCGGTSMPRQIEALRNGV 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I  K   +  +K  VLDEAD+M D+GF  ++  ILD  P   + ++F
Sbjct: 143 DVLVATPGRLRDLIDRKVCILDSVKIAVLDEADQMADMGFLPEVTEILDQVPPGGQRMLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL + Y  + V   +       + + +  ++V    +      I    G  
Sbjct: 203 SATLEKEIDTLVRRYLSEPVTHEVDPSAGAVTTMSHHVLVVKPKAKAPVTAAIAGQDG-- 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I F  T+    R    L E   +   L G ++QQ R+  L+  + G     +ATDVAA
Sbjct: 261 RSIAFVRTQLGADRVADQLREAGVRAEPLHGGMTQQARNAVLERFKGGGLDCLVATDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGI +  +++V+H + + + ++ LHR+GRT RAGR G  V
Sbjct: 321 RGIHVDGVDVVLHVDPARDGKDYLHRAGRTARAGRSGTVV 360


>gi|226312873|ref|YP_002772767.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095821|dbj|BAH44263.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 414

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 178/339 (52%), Gaps = 10/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L ER     T VQ   +   +  +D LV + TG+GKT A+ L + S +  E         
Sbjct: 18  LRERKMETPTPVQSEAIPLIMAGRDALVESPTGTGKTFAYLLPILSKVNMEQKDVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ +APT EL VQ+ RE E L       V   IGGV V R+   L+    ++V TPGR
Sbjct: 74  --AIVLAPTHELVVQIAREAESLLPGKDTAVMSIIGGVDVKRQIEKLKKKPVLIVATPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L + I  + L +  +K VV+DEAD MLD GF   ++ ++  + +  + L+FSATI+  + 
Sbjct: 132 LLELIEQRKLKVHEVKTVVVDEADRMLDAGFGKPVQEVMKKTLRDTQRLLFSATIAEEVV 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
             A+ + KDA  +  A+     + + +  ++     + + +  +LR    +++IVF +  
Sbjct: 192 HTAEIFTKDAAVIRAAAPE-GAAGVAHMYLVTDPRKKVDTLRRLLRLVNVRSSIVFVNQI 250

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L  H      L  + +++ER+  LQ  RDG   V I TDV+ARGID+P +E
Sbjct: 251 EKVDEIVSKLNYHNLPCRLLHRDATKEERARTLQQFRDGVFPVLITTDVSARGIDIPGVE 310

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVF--VIPQN 351
            ++H + +S+ +  +HRSGRTGR GR G+ VF  V PQ 
Sbjct: 311 CIVHYDPASDADTYIHRSGRTGRMGRAGL-VFSIVTPQE 348


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 186/351 (52%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
           N+  V+ E +   GY   T VQ   +   L  +D++  AQTGSGKT ++ + A+   LL 
Sbjct: 163 NMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAINEILLN 222

Query: 65  ENDR--FSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++R  +SP S  +P AL +APTREL++Q+  E       T V   V  GG     +  +
Sbjct: 223 ISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHE 282

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---- 176
           L  G  ++V TPGRL D      +  S ++ ++LDEAD MLD+GF   I  I+       
Sbjct: 283 LSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDM 342

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P+  +R+ L++SAT    I  LA+ +      + +        +I      +   D+  A
Sbjct: 343 PRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQA 402

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +LR +  K  +VF   +       + L       V++ G+  Q+ER  AL++ + G 
Sbjct: 403 LLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGA 462

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +V +ATDVA+RG+D+P++ +VI  ++ SN ++ +HR GRTGRAG+ G+++
Sbjct: 463 CQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAI 513


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 186/359 (51%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 132 FPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 191 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 249

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 250 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 309

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRD---NAIVNILR 240
           SAT    +  LA+++  D ++VNI S +    H       ++     RD     +  I+ 
Sbjct: 310 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIME 369

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 370 ANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 429

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 430 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 488


>gi|331217149|ref|XP_003321253.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300243|gb|EFP76834.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 574

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 192/387 (49%), Gaps = 34/387 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   + +Q       L  +DV+  + TGSGKT+AF +  A   +   
Sbjct: 118 FPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIP-AMIHINAQ 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 177 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTRGAE 236

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ I++     R+ LMFS
Sbjct: 237 IVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFS 296

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA  Y KD ++VN+ S +   ++I+   ++   SD  +   ++  L    +
Sbjct: 297 ATWPKEVQRLASEYLKDFIQVNVGSLDLT-ANINITQIVEVCSDFEKRGKLIKHLEKISS 355

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           ++A  ++F  T+      TK L +  +  +A+ G+  QQER   L+  + GR+ + IATD
Sbjct: 356 ESAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATD 415

Query: 303 VAARGIDLP----------------------------DLELVIHAELSSNPENLLHRSGR 334
           VA+RG+ +P                            D+  VI+ ++ +  E+ +HR GR
Sbjct: 416 VASRGLAVPHIHLDYRARMSWAGLLLDLFFDPLGDVKDIAYVINYDMPNGIEDYIHRIGR 475

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFR 361
           TGRAGR G +   I  +  + A  L +
Sbjct: 476 TGRAGRTGTAYSYISADQSKLARELVK 502


>gi|222424799|dbj|BAH20352.1| AT1G54270 [Arabidopsis thaliana]
          Length = 328

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 173/330 (52%), Gaps = 9/330 (2%)

Query: 46  TGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           +G+GKT  F     S +L + D         AL +APTRELA Q+ + +  L    GV V
Sbjct: 1   SGTGKTATF----CSGVLQQLDYALLQCQ--ALVLAPTRELAQQIEKVMRALGDYQGVKV 54

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
             C+GG SV  ++R LQ G H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF
Sbjct: 55  HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 114

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           +D I  I    P K ++ +FSAT+ P    + + +    VR+ +  +      I    V 
Sbjct: 115 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVN 174

Query: 226 VALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V   D +   + ++        +++F +TR  V   T  +      V A  G++ Q  R 
Sbjct: 175 VEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKVRSRDHTVSATHGDMDQNTRD 234

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++  R G +RV I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG++
Sbjct: 235 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVA 294

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           +  +  + QR    + +  NV V  E  PS
Sbjct: 295 INFVTLDDQRMLFDIQKFYNVVV--EELPS 322


>gi|66825125|ref|XP_645917.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|1688326|gb|AAB36962.1| IfdA [Dictyostelium discoideum]
 gi|60473986|gb|EAL71923.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 395

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 195/375 (52%), Gaps = 19/375 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  +P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + + S 
Sbjct: 26  FDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSR 85

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRE 117
           +     +        AL IAPTRELA Q+ + +    E+L+ K+      CIGG  +  +
Sbjct: 86  IDISVLKCQ------ALIIAPTRELAQQIQKVVLALGEYLHIKS----YACIGGTKITDD 135

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + LQ+G H+VVGTPGR+ + +    +N   ++   LDEADEML  GF+D I  I    P
Sbjct: 136 IQALQSGVHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLP 195

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIV 236
           K  ++ +FSAT++     +   + ++ V + +  +      I    V V +   +   + 
Sbjct: 196 KTIQVGLFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLT 255

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        +++FC+TR  V   T  + E  F V +  G+  Q++R   LQ  R G  R
Sbjct: 256 DLYETLSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGD--QKDRDGILQAFRSGATR 313

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  I    + + 
Sbjct: 314 VLITTDLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQI 373

Query: 357 ERLFREANVSVVWEP 371
           + L R  N  +   P
Sbjct: 374 DELSRHYNTYIAEMP 388


>gi|168049229|ref|XP_001777066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671509|gb|EDQ58059.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 616

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + L  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 178 FPDPILKKLKAKGITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMLALQEE 237

Query: 67  DRFS--PASAPLALAIAPTRELAVQ---VGRELEWLYAKTG---VVVAVCIGGVSVHRER 118
            R        P  L + P+RELA Q   V  E   + ++ G   +   +CIGG+ +  + 
Sbjct: 238 VRMPLIGGEGPFGLVVCPSRELARQTYDVVEEFTAVLSEKGYPQLRSMLCIGGIDMRSQL 297

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +++G HIVV TPGRL D +  K +N+ + K + LDEAD ++DLGF +DI  + D    
Sbjct: 298 EVVKHGVHIVVATPGRLKDMLAKKKMNLDNCKYLTLDEADRLVDLGFEEDIREVFDHFRG 357

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    +   ++  
Sbjct: 358 QRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 417

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   + G+  V 
Sbjct: 418 LQ-KTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREFAIASFKAGKKDVL 476

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 477 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINKN 529


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 177/337 (52%), Gaps = 6/337 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLAL 78
           Y   T +Q   +   L  +D++  AQTGSGKT AF L +   LL + D     +  P  +
Sbjct: 194 YTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIV 253

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+  E       T + V V  GG +V  + + ++ G H++V TPGRL D 
Sbjct: 254 IVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHVLVATPGRLLDF 313

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATISPAIT 194
           I    +   ++  VVLDEAD MLD+GF   IE ++  +  P+K  R+ LMFSAT    I 
Sbjct: 314 IDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFSATFPAEIQ 373

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  +  + + V +       +D++    LV    +   +  IL     K  +VF  T+
Sbjct: 374 ELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETK 433

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +      +++E  F   ++ G+  Q+ER  AL   + GR  V IAT VAARG+D+ ++ 
Sbjct: 434 RNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVN 493

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            V++ +L  + ++ +HR GRTGR G KG +  F  P+
Sbjct: 494 HVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPE 530


>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 428

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 183/340 (53%), Gaps = 5/340 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y+  T +Q   +   L  KD+L  A TGSGKT AF L +   L++     S    
Sbjct: 23  LTELKYLQPTPIQAETIPSTLTGKDLLAGANTGSGKTAAFALPILHQLVSRRAATSAKGN 82

Query: 75  PL-ALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            + AL + PTRELA QV    +   ++    + V    GGVSV+ +   L+ GA +VV T
Sbjct: 83  FVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAFGGVSVNTQMLALRGGADVVVAT 142

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L +S +  +VLDEAD ML LGF +++  +L+  PK+++ L+FSAT   
Sbjct: 143 PGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLLPKQKQTLLFSATFPD 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +    + + + + S   + S +  R + V    +   + ++L+ H  +  ++F 
Sbjct: 203 EVRQLTQALLVNPLEIQLQSA--EASTLVQRVMTVNREKKTALLAHLLQQHQWRQVLIFV 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + S +   + LA+         G+ +Q  RS  L+  + G  +V IATD+AARG+D+ 
Sbjct: 261 GAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQVLIATDIAARGLDIE 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            L +VI+ +L  +P + +HR GR+GRAG  G+++ ++  +
Sbjct: 321 KLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALTLLSHD 360


>gi|221068762|ref|ZP_03544867.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713785|gb|EED69153.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 707

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/392 (33%), Positives = 198/392 (50%), Gaps = 61/392 (15%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   T VQ+  +   + E        D++VS+QTGSGKT AF L +  
Sbjct: 65  PELV-QAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAAFLLPVLH 123

Query: 61  TLLAE------------------------------------NDRFSPASAPLALAIAPTR 84
           TL+ +                                    N R   A+ P AL + PTR
Sbjct: 124 TLIEQRAQADADAKAEFERLCAEATAKGEPVPKRNKRKDPTNSRNFKAAVPGALVLCPTR 183

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ +A  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 184 ELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQN-ADLVVATPGRLLDLQRSMQ 242

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P +  LA     D
Sbjct: 243 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNVMTAQRKQTMMFSATFAPRVQQLAMRVMHD 302

Query: 204 ----AVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYHGAKNAIVFCST 253
                 +V + +   +H+ I  + VL      DNA      + + LR      AIVF ST
Sbjct: 303 NGSGVKKVTVDTPQEKHASI--KQVLFWA---DNAQHKRKMLDHWLRDSSINQAIVFAST 357

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +
Sbjct: 358 QVECDGLATDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTI 417

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V +  L    E+  HR GRTGRAGR+G +V
Sbjct: 418 THVFNYGLPMKAEDYTHRIGRTGRAGREGTAV 449


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 188/364 (51%), Gaps = 16/364 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           +   T VQ+  +    + +D++  AQTGSGKT  F   L + L        P  A     
Sbjct: 9   FTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYS 68

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL +APTRELA Q+  E      ++ V   V  GG  +  + R++  G  ++V 
Sbjct: 69  RKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     S + R+ LMFS
Sbjct: 129 TPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+++  + + +++        +I  R + V   D+ +A++++L       
Sbjct: 189 ATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGL 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A + +AT VAAR
Sbjct: 249 TLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADILVATAVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           G+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        QN+ +    +  EA
Sbjct: 309 GLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEA 368

Query: 364 NVSV 367
           N  V
Sbjct: 369 NQEV 372


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 197/391 (50%), Gaps = 37/391 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N +R 
Sbjct: 152 LAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNNLNRS 211

Query: 70  SPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P    SAP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L  G  
Sbjct: 212 KPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELTRGCG 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------SSPKKR 180
           ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         P +R
Sbjct: 272 LLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGER 331

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRV--------NIASENRQHSDIDYRAVLVALSD 230
           + L++SAT    I  +A+   Y    ++V        NI  + R   D+D R  L+    
Sbjct: 332 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDVDKRGCLL---- 387

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                  +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + 
Sbjct: 388 ------EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIF 441

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           + G  RV +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++     
Sbjct: 442 KSGVCRVLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTALSFFND 501

Query: 349 -PQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             +N+      L RE N +V+    P V+A+
Sbjct: 502 KNRNIVDDLIPLLRETNQTVL----PEVQAL 528


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 223 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 282

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 283 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 342

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 343 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 522

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 523 VKGLMEILNEANQEV 537


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 9/361 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K FE+    PQ++  A++++GY   T +Q       L  +D++  A+TGSGKT AF L 
Sbjct: 225 IKTFEDCGFSPQLM-NAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLP 283

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++ +    +    P+ +  APTRELA Q+  E +      G+ V+   GG+S   +
Sbjct: 284 MIVHIM-DQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQ 342

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L++G  IV+ TPGRL D I+ K L +     +VLDEAD M DLGF   I  I+    
Sbjct: 343 FKELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIR 402

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+   +  LA+    D VRV +      + DI  + V V  SD +     
Sbjct: 403 PDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDI-TQVVQVIPSDAEKLPWL 461

Query: 238 ILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +  G     + +VF S +A+V      L +   ++ AL G+  Q  R + LQ  + G 
Sbjct: 462 LDKLPGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGI 521

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V IATDVAARG+D+  ++ V++ +++ + +  +HR GRTGRAG K  + + +  + + 
Sbjct: 522 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEA 581

Query: 355 R 355
           R
Sbjct: 582 R 582


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 180/357 (50%), Gaps = 4/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   ++  GYV  T++Q       L   D+   A+TGSGKT+AF L     ++A+ 
Sbjct: 62  IPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSIIHIMAQP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P   P+A+ +APTRELA QV    E      GV      GG     +   L+ GAH
Sbjct: 122 D-LRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALERGAH 180

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL D I+    N+     ++LDEAD MLD+GF   I  I+    + R+ LMFS
Sbjct: 181 IVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFS 240

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GA 244
           AT    I  LA ++ K   ++ I ++    ++ +   V+  +SD D A+     +    +
Sbjct: 241 ATWPKEIQKLASDFMKTPTQIFIGNQELT-ANPNIEQVVEVVSDFDKAMRFNYWFQQITS 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         ++    +  A+ G+  Q+ER   L+  R+G+  V +ATDVA
Sbjct: 300 TKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+ D+  VI+ +  S  E+ +HR GRT R  +KG S+  I     + A  L +
Sbjct: 360 ARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHASALVK 416


>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
          Length = 1034

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 190/365 (52%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 385 EVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLADG 443

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 444 DGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 503

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 504 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 563

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V V +   +    D++   V++    +   ++ IL  Y    +AI
Sbjct: 564 PRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSAI 623

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 624 IFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGL 683

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ V
Sbjct: 684 DVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAGV 743

Query: 369 WEPAP 373
             P P
Sbjct: 744 LVPEP 748


>gi|294141707|ref|YP_003557685.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328176|dbj|BAJ02907.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 352

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/339 (34%), Positives = 181/339 (53%), Gaps = 5/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L     +++   R    
Sbjct: 14  DTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRIIST--RALSK 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA QV  +L  L A T       +GG + + + + L    H VV TP
Sbjct: 72  KDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAKLLARDPHFVVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-MLMFSATISP 191
           GRL DH+    L+++ L+ ++LDEAD MLDLGF + ++ I  ++  KRR  LMFSAT+  
Sbjct: 132 GRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHKRRQTLMFSATLDH 191

Query: 192 A-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIV 249
             I  +A    K    V++ + N ++ DI  R  L    D   A++ +IL     K  I+
Sbjct: 192 GQINDIAAELLKSPEHVDVGAGNIENLDITQRIYLADHLDHKEALLESILNNETHKQIII 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR    R    LA    +  +LSG L Q  R+  +     G  ++ + TD+A+RG+D
Sbjct: 252 FTATREDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQKILVTTDIASRGLD 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 312 LLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|239981277|ref|ZP_04703801.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291453134|ref|ZP_06592524.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356083|gb|EFE82985.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 503

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 184/361 (50%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + L  E
Sbjct: 82  GLPAPLLACLTAQGVTEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLARL--E 139

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P S PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ GA
Sbjct: 140 GRRAEPRS-PLGLVLVPTRELAQQVTEALTPYARALRLRMTTVVGGLSLGRQASALRGGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  + A VLDEAD+M D+GF   +  +LD      + L+F
Sbjct: 199 EVVVATPGRLKDLIDRGDCRLDQVGATVLDEADQMADMGFMPQVTELLDQVRPGGQRLLF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D    ++       + +++    V   D+      I    G  
Sbjct: 259 SATLDRNVDLLVRRYLDDPTVHSVDPSAGAVTTMEHHLFQVHGPDKHALATEIAARDG-- 316

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R  + L  +  +  AL G  SQ +R+  L   RDG     +AT+VAA
Sbjct: 317 RVILFLDTKHAVDRLAEHLLRNGVRAAALHGGRSQAQRTRTLTQFRDGHVTALVATNVAA 376

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL  +A +
Sbjct: 377 RGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGASGSVVTLVLPEQRRSMSRLMADAGI 436

Query: 366 S 366
           +
Sbjct: 437 T 437


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 187/370 (50%), Gaps = 37/370 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +     P  A     
Sbjct: 194 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDG----PGEALKAVK 249

Query: 75  -----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 250 GNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER 309

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + +   K +VLDEAD+MLD+GF   I  I+  D+ P K  
Sbjct: 310 GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQIRRIVEQDTMPPKGV 369

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  +MFSAT    I  LA+++  + + + +        +I  + + V   D+ + +++IL
Sbjct: 370 RHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFLLDIL 429

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L        ++ G+ SQ++R  AL+  R GR+ + 
Sbjct: 430 GATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPIL 489

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G+            A  
Sbjct: 490 VATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATS 537

Query: 359 LFREANVSVV 368
            F E NV++ 
Sbjct: 538 FFNEKNVNIA 547


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 223 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 282

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 283 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 342

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 343 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 522

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 523 VKGLMEILNEANQEV 537


>gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 421

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 186/343 (54%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 185/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 132 FPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 191 PLLGPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLSRGV 249

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 250 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 309

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++V I S++    H       ++     RD  I ++ R   
Sbjct: 310 SATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMINHLERIMD 369

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 370 DKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 429

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 430 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 487


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 193/356 (54%), Gaps = 12/356 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+GE LS+ G+ + T +Q       L  +D++  A TGSGKT+++   L S +   +  F
Sbjct: 120 VMGE-LSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSY--LLPSIVHINHQPF 176

Query: 70  --SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
                  P+AL +APTRELA QV +++ + + ++  + + C+ GG    ++ RDL+ G  
Sbjct: 177 LERGVDGPIALVLAPTRELAQQV-QQVAFAFGRSSKIKSTCVYGGAPKGQQIRDLERGVE 235

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     VVLDEAD MLD+GF   I  I++     R++ M+S
Sbjct: 236 ICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRPDRQVQMWS 295

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILR---YH 242
           AT    +  LA+++ +D + VNI S     +    + + V   S++D  ++ +L      
Sbjct: 296 ATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQLLEEIMQE 355

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VFC T+       + +    +  + L G+ SQ ER   L   RDGRA + +ATD
Sbjct: 356 KDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGRAPILVATD 415

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +  F    NM++ A+
Sbjct: 416 VASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMKQAAD 471


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 188/361 (52%), Gaps = 8/361 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P+ + E +   G+   T +Q       L  +D++  + TGSGKT+AF L  A   +  
Sbjct: 147 SFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAF-LLPAIVHINA 205

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L IAPTRELAVQ+  E     A + +      GGV    +  DL+ G 
Sbjct: 206 QPYLQPGDGPIVLMIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRRGV 265

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGR+ D +     N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+
Sbjct: 266 EICICTPGRMIDMLSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMW 325

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR--Y 241
           SAT    I  LA ++  D ++V + S +   ++   + ++  + D  + +++ + LR  Y
Sbjct: 326 SATWPKEIVALANDFLTDFIQVTVGSLDLT-ANKRIKQIVEVMDDHQKYSSLQDHLRDIY 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G +  I+FC T+      ++ L    +   A+ G  SQ+ER   L+  +DGR ++ +AT
Sbjct: 385 EGGR-IIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVAT 443

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVA+RG+D+ D+  V++ ++  N E+ +HR GRT RAG KG S+ F    N  R A  L 
Sbjct: 444 DVASRGLDIKDIRYVVNFDMPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLV 503

Query: 361 R 361
           +
Sbjct: 504 K 504


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 163 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 222

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 223 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 282

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 283 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 342

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 343 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 402

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 403 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 462

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 463 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 522

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 523 VKGLMEILNEANQEV 537


>gi|149188012|ref|ZP_01866307.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838000|gb|EDL54942.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 406

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/351 (34%), Positives = 176/351 (50%), Gaps = 7/351 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + + T +Q   +   + + DVL  AQTGSGKT+AFGL L   LL  N+    A     L 
Sbjct: 20  FSHATHIQTLAIPAIIAQHDVLALAQTGSGKTLAFGLGLIEQLL--NNEIKQA-----LI 72

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV   ++ + A  G  VAV  GG  V  +   L     IVV TPGRL D +
Sbjct: 73  LVPTRELAKQVTETIDPIVALLGYSVAVVCGGEDVEPQVGQLNAAPEIVVATPGRLLDIM 132

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
             + ++   ++ VVLDE D +LD+GF  DI+ IL+    +++ LMFSAT+S  +      
Sbjct: 133 NKQLVDTQRIETVVLDEVDRLLDMGFWPDIQRILNGLRHRKQTLMFSATLSEQLEAKVTT 192

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              + +RV     N     I     LV    + N ++  +  H     +VF   R +   
Sbjct: 193 LLNNPIRVVANKTNSVVEQIAETLYLVNKGSKANVLIKQITEHQWPQVLVFIGARDNADA 252

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L +      AL G   Q ER   LQ  + G  +V IATD+ ARGI + +L +VI+ 
Sbjct: 253 LCKKLNKAGITSGALHGNKEQTERERTLQAFKQGEIQVLIATDILARGIHVDNLPVVINY 312

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           EL S+P   +HR GRT RAG+ G ++ ++        E + +  + S+V E
Sbjct: 313 ELPSDPSVYVHRVGRTARAGKTGQALSLVCHGETEYLEAIRQLTSRSLVLE 363


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 184/345 (53%), Gaps = 8/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + +   +++ GYV LT VQ+  +   L  +D++  AQTGSGKT AF L + S ++ E
Sbjct: 227 NFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILSHMMNE 286

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                +F P   P A+ IAPTREL  Q+  +       T V   V  GG+      RD++
Sbjct: 287 GITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAMRDVE 346

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +S LK +VLDEAD MLD+GF   +E ++ S    + +
Sbjct: 347 RGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPGMPAKE 406

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K D + V +       SD++   + +    + + +V 
Sbjct: 407 ERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVE 466

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G +  ++F +T+         L +  F   ++ G+  Q +R  A++  R G+  V
Sbjct: 467 ILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPV 526

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G
Sbjct: 527 IVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVG 571


>gi|301632627|ref|XP_002945383.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Xenopus (Silurana)
           tropicalis]
          Length = 564

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 196/387 (50%), Gaps = 60/387 (15%)

Query: 13  EALSERGYVNLTSVQEAILNPDL-------REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +A+ + GY   T+VQE  +   +       R  D++VS+QTGSGKT AF L +  TL+ +
Sbjct: 45  QAVRDLGYTQPTAVQEKAIPMAMGRDAEAGRFIDLMVSSQTGSGKTAAFLLPVLHTLVRQ 104

Query: 66  ------------------------------------NDRFSPASAPLALAIAPTRELAVQ 89
                                               N R   A+ P AL + PTRELA Q
Sbjct: 105 QAGQQASERAEYERLCAEATARGEATPKRTRRKDPTNPRNFKAAVPGALILCPTRELAQQ 164

Query: 90  VGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           V  + ++ +    G+ VA  +GG+    +   LQN A++VV TPGRL D  R   + +  
Sbjct: 165 VAHDAIDLVRHCKGLRVANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSMQIKLDQ 223

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA---- 204
           ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     D     
Sbjct: 224 VQFLVVDEADRMLDLGFSDDLAEINQLTSQRKQTMMFSATFAPRIQQLAMRVMHDGGSAV 283

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYHGAKNAIVFCSTRASVS 258
            ++ I S   +H++I  + VL      DNA      + + LR      AIVF ST+    
Sbjct: 284 QKLTIDSPQEKHANI--KQVLFWA---DNAQHKRKMLDHWLRDASIDQAIVFASTQMECD 338

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 339 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 398

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G++V
Sbjct: 399 FGLPMKAEDYTHRIGRTGRAGRDGLAV 425


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 187/370 (50%), Gaps = 37/370 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +     P  A     
Sbjct: 187 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDG----PGEALKAVK 242

Query: 75  -----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 243 GNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER 302

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + +   K +VLDEAD+MLD+GF   I  I+  D+ P K  
Sbjct: 303 GCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFEPQIRRIVEQDTMPPKGV 362

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  +MFSAT    I  LA+++  + + + +        +I  + + V   D+ + +++IL
Sbjct: 363 RHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVIWVEDLDKRSFLLDIL 422

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L        ++ G+ SQ++R  AL+  R GR+ + 
Sbjct: 423 GATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQRDREEALRQFRSGRSPIL 482

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G+            A  
Sbjct: 483 VATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------ATS 530

Query: 359 LFREANVSVV 368
            F E NV++ 
Sbjct: 531 FFNEKNVNIA 540


>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
          Length = 862

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 184/343 (53%), Gaps = 6/343 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +   L   + 
Sbjct: 13  PKLL-ESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSH- 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S       + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   L     I
Sbjct: 71  --SQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGNPDI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  HI   GL++  +K +VLDEAD + ++G    IE IL+S PK R+ ++ SA
Sbjct: 129 VVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAK 245
           T+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR      +
Sbjct: 189 TMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSHE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  I TD+AA
Sbjct: 249 RAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G +  +I
Sbjct: 309 RGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLI 351


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   ++ V V+     R+   I    YRA    +  +   +V++L+   A  +I
Sbjct: 195 AIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRAD--NIEHKTALLVHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L +       L GE+ Q +R+ A++ + DGR  V IATDVAARGI
Sbjct: 253 VFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVNVLIATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++    +  LHR GRT RAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGTAISLV 352


>gi|312194304|ref|YP_004014365.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225640|gb|ADP78495.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 489

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/373 (35%), Positives = 189/373 (50%), Gaps = 18/373 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +P  +   L+       T +Q A L   L  +DVL   +TGSGKT+AF L +
Sbjct: 1   MSSFTDLGVPARLTSVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A AP AL +APTRELA Q+   L+ L A  G+      GGV  + + 
Sbjct: 61  VARL--SGGPRAQAGAPRALILAPTRELAAQIDTALQPLAAVAGLTSCTVFGGVGQNPQV 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  IVV  PGRL D I+ +  +++ +K  VLDEAD M DLGF   +  +L  +P 
Sbjct: 119 AAIRRGVDIVVACPGRLEDLIKQRHCSLAQVKITVLDEADHMADLGFLPAVRRLLGQTPS 178

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ++FSAT+  AI TL + Y  K AV       +   S +   A  V   +RD+ +  
Sbjct: 179 GGQRMLFSATLDKAIDTLVRQYLNKPAVH----EADSAQSPVGTMAHHVLHVERDSRLPV 234

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRD 292
           ++    A    +VF  T+       K LA HL       V L G LSQ  R+  L   + 
Sbjct: 235 LVDLSSAPGRTVVFTRTKHGA----KALARHLNRAGVPTVELHGNLSQNARTRNLDDFQT 290

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA   +ATD+AARGI + D+ LVIHA+  ++ +  LHRSGRT RAG  G  + +   + 
Sbjct: 291 GRAAALVATDIAARGIHVDDVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTDQ 350

Query: 353 QRRAERLFREANV 365
            R   +L R A +
Sbjct: 351 LREVSQLARTAGI 363


>gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum]
          Length = 606

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 189/371 (50%), Gaps = 28/371 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L + +  L
Sbjct: 182 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 241

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 242 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 301

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL   P     
Sbjct: 302 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 361

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 362 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 421

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL          F + +       K L +  +  V L G 
Sbjct: 422 RVEQIVYMVSEQEKRRKLLEILAAGLDPTCYYFVNQKKGADVLAKGLEKLGYSAVVLHGG 481

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 482 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 541

Query: 338 AGRKGMSVFVI 348
           AG+ G+++ ++
Sbjct: 542 AGKSGIAISLL 552


>gi|229106040|ref|ZP_04236660.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
 gi|228677375|gb|EEL31632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-28]
          Length = 345

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 169/308 (54%), Gaps = 6/308 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E ++     
Sbjct: 18  ALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLCEMVEWEENK----- 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   HIVVGTPG
Sbjct: 73  -PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P +R  ++FSAT+   +
Sbjct: 132 RVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTQRMTMLFSATLPEDV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L++ Y      + I +       I++        D+ + + ++       + I+FC T
Sbjct: 192 EKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREEDKLSLLKDVTTIENPDSCIIFCRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAARGID+ ++
Sbjct: 252 QENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARGIDIDNI 311

Query: 314 ELVIHAEL 321
             VI+ ++
Sbjct: 312 THVINYDI 319


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 185/348 (53%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + +   +++ GYV LT VQ+  +   L  +D++  AQTGSGKT AF L + S ++ E
Sbjct: 258 NFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILSHMMNE 317

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                +F P   P A+ IAPTREL  Q+  +       T V   V  GG+      RD++
Sbjct: 318 GITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHAMRDVE 377

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +S LK +VLDEAD MLD+GF   +E ++ S    + +
Sbjct: 378 RGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPGMPAKE 437

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K D + V +       SD++   + +    + + +V 
Sbjct: 438 ERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKRDKLVE 497

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G +  ++F +T+         L +  F   ++ G+  Q +R  A++  R G+  V
Sbjct: 498 ILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRSGKCPV 557

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G + 
Sbjct: 558 IVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKAT 605


>gi|168015062|ref|XP_001760070.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688820|gb|EDQ75195.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/324 (36%), Positives = 176/324 (54%), Gaps = 19/324 (5%)

Query: 49  GKTVAFGLALASTLLAE--NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
           GKT+AF L +  +L             AP  + +APTRELA QV  + E      G+   
Sbjct: 130 GKTLAFVLPVLESLSQSGYTKSLGRGRAPAVIVLAPTRELAKQVHADFETYGNAVGLSTV 189

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
              GG     +   L+ G  IVVGTPGR+ DH+   GLN+  LK  +LDEADEML++GF 
Sbjct: 190 CVYGGAPYGPQENALRRGVDIVVGTPGRIKDHLERGGLNLKSLKFRILDEADEMLNMGFV 249

Query: 167 DDIEFILDS--SPKKRRMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRA 223
           DD+E IL     P K + L+FSAT+   +  +A+ + K   R V++  + +  +  + + 
Sbjct: 250 DDVEKILGGVDDPSKVQTLLFSATLPTWVQQIARKFLKPERRTVDLVGDEKMKASNNVKH 309

Query: 224 VLVA--LSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           +L+    S R   + ++++ +G+    IVF  T+   S    VL     +  AL G++ Q
Sbjct: 310 LLLPGHYSMRTQLVQDVIQCYGSGGRIIVFTETKNDASELAGVLKSGTAR--ALHGDIPQ 367

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R   LQ  R  +  V +ATDVAARG+D+ D++LVI  E   + E  +HRSGRTGRAG 
Sbjct: 368 NQREVTLQGFRTSKFSVLVATDVAARGLDINDVQLVIQCEPPRDAETYIHRSGRTGRAGN 427

Query: 341 KGMSV--------FVIPQNMQRRA 356
            G+SV        ++IPQ ++R+A
Sbjct: 428 TGISVLFYDRKKEYMIPQ-IERKA 450


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 177/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L   DV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 16  LQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLLQRLVQHGPEVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  I 
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALPAQRQTLLFSATFTDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+VF  TR
Sbjct: 195 TMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENNWEHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V     +L +  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+D+ +L 
Sbjct: 255 NGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVATDVAARGLDIDNLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 9/361 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K FE+    PQ++  A++++GY   T +Q       L  +D++  A+TGSGKT AF L 
Sbjct: 225 IKTFEDCGFSPQLM-NAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLP 283

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++ +    +    P+ +  APTRELA Q+  E +      G+ V+   GG+S   +
Sbjct: 284 MIVHIM-DQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQ 342

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L++G  IV+ TPGRL D I+ K L +     +VLDEAD M DLGF   I  I+    
Sbjct: 343 FKELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIR 402

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+   +  LA+    D VRV +      + DI  + V V  SD +     
Sbjct: 403 PDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDI-TQVVQVIPSDAEKLPWL 461

Query: 238 ILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +  G     + +VF S +A+V      L +   ++ AL G+  Q  R + LQ  + G 
Sbjct: 462 LDKLPGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGI 521

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V IATDVAARG+D+  ++ V++ +++ + +  +HR GRTGRAG K  + + +  + + 
Sbjct: 522 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEA 581

Query: 355 R 355
           R
Sbjct: 582 R 582


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 184/342 (53%), Gaps = 8/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + + GY   + +Q+  L P L+ +DV+  AQ+G+GKT    +++   +   + +     
Sbjct: 36  GVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNTSSRKVQ--- 92

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++P+RELA Q  + ++ + A T +    CIGG S+  + + L+ G H V GTPG
Sbjct: 93  ---ALVLSPSRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPG 149

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+   L    +K +VLDE+DEML  G +D I  +  + P   ++ + SAT+   I
Sbjct: 150 RVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEI 209

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             + + +  D VR+ +  +      I    V V   + + + + ++        AI+FC+
Sbjct: 210 LEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLIINQAIIFCN 269

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V   T+ +    F V ++ G+  Q+ER   +   R  ++RV IA+DV ARGID+  
Sbjct: 270 TRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRVLIASDVWARGIDVQT 329

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  VI+ ++ +NPE  +HR GR GR GR+G+++ FV   +M+
Sbjct: 330 VSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMK 371


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 177/337 (52%), Gaps = 6/337 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLAL 78
           Y   T +Q   +   L  +D++  AQTGSGKT AF L +   LL + D     +  P  +
Sbjct: 194 YTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMIHHLLDKEDSLELRTRNPYIV 253

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+  E       T + V V  GG +V  + + ++ G H++V TPGRL D 
Sbjct: 254 IVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQLQLMRGGCHVLVATPGRLLDF 313

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATISPAIT 194
           I    +   ++  VVLDEAD MLD+GF   IE ++  +  P+K  R+ LMFSAT    I 
Sbjct: 314 IDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHATMPEKQQRQTLMFSATFPAEIQ 373

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA  +  + + V +       +D++    LV    +   +  IL     K  +VF  T+
Sbjct: 374 ELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRKKLEEILNGGNPKGTLVFVETK 433

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +      +++E  F   ++ G+  Q+ER  AL   + GR  V IAT VAARG+D+ ++ 
Sbjct: 434 RNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVN 493

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            V++ +L  + ++ +HR GRTGR G KG +  F  P+
Sbjct: 494 HVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPE 530


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 164 ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 223

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 224 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 283

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 284 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 343

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A+
Sbjct: 344 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSAL 403

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 404 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 463

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 464 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 523

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 524 VKGLMEILNEANQEV 538


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  EALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +I
Sbjct: 195 AIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|320009565|gb|ADW04415.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 726

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 188/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL A  
Sbjct: 54  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLAALA 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 111 GGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 170

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 171 VLVATPGRLRDIINRGACSLENVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQRMLFS 230

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     S + +  ++V   D+      I    G   
Sbjct: 231 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVVKPKDKAPVTAAIAARKG--R 288

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 289 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 348

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G+ V +   + +R+  RL  +A V
Sbjct: 349 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLALPHQRRQIFRLMEDAGV 407


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 183/344 (53%), Gaps = 3/344 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT  F L +   L  ++    
Sbjct: 12  IVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPILQML--DDGTKV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL +APTRELAVQV   ++       +      GGV    ++R L  G  I+V 
Sbjct: 70  RAKRIRALILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRLIEGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FSAT+S
Sbjct: 130 TPGRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK   ++ + +++A +      ID   V V    +   + ++++      A++F
Sbjct: 190 DQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSSLIQEQKWDQALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      +     SQ  RS  L+  ++G+ +  IAT VA+RGID+
Sbjct: 250 IETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASRGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
             L  V++ +L   PE  +HR GRTGRAG  G ++ FV   N +
Sbjct: 310 EQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFK 353


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 17/360 (4%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +GE L       G+ +   VQ+A +   L ++D++  AQTGSGKT AF   + S +L   
Sbjct: 138 LGEELDHNIFKAGFYHPMPVQKATIPIVLDKRDLMSCAQTGSGKTAAFLFPIISDILKNP 197

Query: 64  --AENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                  FS      P+AL +APTREL  Q+  E       T +      GG   + + +
Sbjct: 198 PMPRQSNFSHRVTVFPVALILAPTRELGQQIYEEAVRFTEDTPIRSVCVYGGSDSYTQIQ 257

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
           ++  G  I+V TPGRL      K +++S ++ ++ DEAD MLD+GF   I  I + +   
Sbjct: 258 EMGKGCDILVATPGRLLYFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIREICEDNEMP 317

Query: 179 ---KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              KR+ LMFSAT    I  LA ++  D V + +         I    + V    +  AI
Sbjct: 318 PVGKRQTLMFSATFPKQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVEEEIKQEAI 377

Query: 236 VNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +++L     K    ++F  T+         L +H ++V ++ G+ SQ +R  +L+  ++ 
Sbjct: 378 LDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDFSLKRFKEN 437

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVA+RG+D+PD+E+VI+ ++ +  E+ +HR GRTGRAG+KG ++  I +  Q
Sbjct: 438 VIQLLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGTAITFINEKTQ 497


>gi|326488617|dbj|BAJ97920.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 170/325 (52%), Gaps = 9/325 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--PASAPLALAIAPTRELAVQVGR 92
           L  +D++  A TGSGKT+ F L L    L E       P   P  + I P+RELA Q   
Sbjct: 100 LSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMLMPIVPGEGPFGMIICPSRELAKQTYD 159

Query: 93  ELEWLYAK------TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
            ++             +   +CIGG+ +  +   ++ G HIVV TPGRL D +  K +N+
Sbjct: 160 VIDMFLTPLKQAGFPEIRPLLCIGGIDMRTQLDVVKKGVHIVVATPGRLKDLLAKKKMNL 219

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
            + + + LDEAD ++DLGF DDI  + D    +R+ L+FSAT+   I   AK+     V 
Sbjct: 220 DNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVI 279

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           VN+      + D+      V    R   ++  L+       ++FC  +A V    + L  
Sbjct: 280 VNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQ-KTPPPVLIFCENKADVDYIHEYLLL 338

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
              + VA+ G   Q+ER NA++  ++G+  V +ATDVA++G+D PD++ VI+ ++ +  E
Sbjct: 339 KGVEAVAIHGGKDQEERQNAIEFFKNGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 398

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQN 351
           N +HR GRTGR G+ G++   I +N
Sbjct: 399 NYVHRIGRTGRCGKTGIATTFINKN 423


>gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
 gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
          Length = 406

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  +D  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHHLL-NHDIPTKHN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+  +   L     + +A+  GG    ++ ++++ G  I++GT G
Sbjct: 81  QPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLKEIERGVDILIGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +++  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+S 
Sbjct: 141 RVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEERFTMLFSATLSH 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  V I    R    I       +  D+   ++ ++        IVF 
Sbjct: 201 RVRELAFEDMHNAEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLMEEEWPDRCIVFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L+    +V  L+G++ Q++R   L     G   + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 321 DVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 354


>gi|311064761|ref|YP_003971486.1| ATP-dependent RNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310867080|gb|ADP36449.1| ATP-dependent RNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 681

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 195/390 (50%), Gaps = 26/390 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+ +   L+  G V    +Q   L   L   D+L   QTGSGKT+AF + L + L    
Sbjct: 54  VPKPLVHVLAMDGKVTAFPIQADTLADSLNGVDLLGRGQTGSGKTLAFAIPLVARLSEHS 113

Query: 63  -----LAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
                + E ++   AS             P  L +APTREL  Q+   ++ L    G+  
Sbjct: 114 VTEVAMKEFEQIRKASDEKAAREQASLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMST 173

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GGVS  R+   L+ GA IVV  PGRL D +R   L++  ++  +LDEADEM D+GF
Sbjct: 174 VTVYGGVSYARQVAGLRAGADIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMADMGF 233

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
              +  +L+ +  + + ++FSAT+   +  L K +  DA    ++S   Q   + +    
Sbjct: 234 LPPVTRLLEQTDSRGQRMLFSATLDHGVDALVKRFLPDAKVHAVSSVVSQVDTMTHHVFE 293

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V+  ++ + ++ +L   G    I+F  T+    +  K L +     V L G LSQ++R  
Sbjct: 294 VSQGNK-HEVIRLL-ASGTGKRILFTRTKFQAKKMAKKLIDEGIPAVDLQGNLSQKQRDR 351

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L     G  RV +ATDVAARGID+ D+ LV+  +  ++P++ LHRSGRT RAG +G  V
Sbjct: 352 NLLAFEKGLVRVLVATDVAARGIDVHDVTLVVQTDPPADPKSFLHRSGRTARAGEQGDVV 411

Query: 346 FVIPQNMQRRAERLFREANV---SVVWEPA 372
            ++  N  R   ++ + A +   SV   PA
Sbjct: 412 TLVLPNQARSTRQMMKRAGIRVKSVAITPA 441


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 190/351 (54%), Gaps = 16/351 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T +Q       ++ +D++  A+TGSGKT+  G  + + L  E  R +    P  L
Sbjct: 174 GFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTL--GYLIPAFLHLERHRNNSRLGPSVL 231

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            IAPTRELA Q+  E    + ++  + + C+ GG     + RD++ GA IV+ TPGRL D
Sbjct: 232 VIAPTRELATQIQEECV-KFGRSSRITSTCVYGGAPKGPQLRDIERGADIVIATPGRLND 290

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  K +++  +  +VLDEAD MLD+GF   I  I++    +R+ LM++AT    +  +A
Sbjct: 291 FLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRRQTLMYTATWPKEVRKIA 350

Query: 198 KNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCST 253
            +   + V+VNI +  E   +  I     +V   ++   +  ILR    G+K  IVFCST
Sbjct: 351 GDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEKQRRLEQILRSQEPGSK-IIVFCST 409

Query: 254 RASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           +    R   +L+ +L   F   A+ G+ SQ ER   L   R GR  + +ATDVAARG+D+
Sbjct: 410 K----RMCDMLSRNLGRDFGAAAIHGDKSQSERDFVLSQFRTGRTPILVATDVAARGLDI 465

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+  V++ +  +  E+ +HR GRTGRAG  G++     +   + A+ L +
Sbjct: 466 KDIRFVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKELIK 516


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 183/341 (53%), Gaps = 12/341 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---------ENDRFS 70
           Y   T +Q+  +   +  +D++  AQTGSGKT AF L + + +L          ++   S
Sbjct: 169 YTKPTPIQKHSIPVIMAGRDLMACAQTGSGKTAAFLLPICTAMLKTGPPASRPMQSSYHS 228

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P+ L ++PTRELA+Q   E       TG+   V  GG  V R+  +L+ G  I V 
Sbjct: 229 RQALPVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYGGGEVRRQLYELERGCDICVA 288

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK-RRMLMFSA 187
           TPGRL D +    + +  +  +VLDEAD MLD+GF   I  +++ S  P++ R+ +MFSA
Sbjct: 289 TPGRLTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIRQVVEHSSMPQEGRQTVMFSA 348

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA+++ +D + + +      +  I  R +      + + +V +LR +     
Sbjct: 349 TFPKEIQQLARDFLRDYLYLAVGRVGSTNEFIRQRLLYADQEQKLHYLVKLLRENTNGLV 408

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+         L +  F  V + G+ SQQ+R  AL++ + G   + +ATDVAARG
Sbjct: 409 LIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEALRLFKTGERPILVATDVAARG 468

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ ++  VI+ +L +N ++ +HR GRTGRAG  G++  ++
Sbjct: 469 LDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVATSLV 509


>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
           [Danio rerio]
          Length = 477

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 184/352 (52%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             PQ I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 42  KFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQ 101

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  F     P  L I P+RELA Q    +E+ Y K         +  A+CIGG+SV  
Sbjct: 102 EKRLPFCKREGPYGLIICPSRELARQTHGIIEY-YCKLLEDEGAPQMRCALCIGGMSVKE 160

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D +  K +++   + + LDEAD M+D+GF +DI  I    
Sbjct: 161 QMEVVKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYF 220

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++
Sbjct: 221 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLL 280

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  ++G+  
Sbjct: 281 ECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKD 339

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I
Sbjct: 340 VLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFI 391


>gi|297196654|ref|ZP_06914052.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153328|gb|EDY66637.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 419

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 187/359 (52%), Gaps = 7/359 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   ++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL   L     R +
Sbjct: 1   MARVMTGSGVTEPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLAL---LTRTAGRRA 57

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L + PTRELA QV   L+      G+ +A  +GG+S+ R+   L+ GA +VV 
Sbjct: 58  EPKQPLGLVLVPTRELAQQVSDVLDPYALALGLRLATVVGGLSIGRQATLLRAGADVVVA 117

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATI 189
           TPGRL D +  +   +  ++  VLDEAD+M D+GF   +  +LD   P  +RML FSAT+
Sbjct: 118 TPGRLTDLVARRDCRLDQVRITVLDEADQMCDMGFLPQVSELLDQVRPGGQRML-FSATL 176

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  L   Y  D V   +       + +++  + +  +D+      I    G    ++
Sbjct: 177 DRNVDHLVGRYLHDPVLATVDRAAGAVATMEHHVLNIHPADKYATATEIAARDG--RVLM 234

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +V +FT+ L     +  AL    SQ +R++ L   + G   V +AT+VAARGI 
Sbjct: 235 FLDTKHAVDQFTRHLRGSGIRAAALHSGKSQPQRTHTLAQFKSGEVTVLVATNVAARGIH 294

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           +  L+LV++ +  ++P++ LHR GRT RAG  G  V ++    +R   R+  +A +  V
Sbjct: 295 VDALDLVVNVDPPADPKDYLHRGGRTARAGESGRVVTLVTPGQRRDVNRMMSDAGIRPV 353


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 68  FPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 127 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGKSSRIRNTCVYGGVPKGGQIRDLAKGV 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL      R+  M+
Sbjct: 186 EVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMW 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA +Y  + ++VNI S   +  H       V+     RD    ++ +   
Sbjct: 246 SATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME 305

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 306 DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q++A  L
Sbjct: 366 DVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDL 423


>gi|323452072|gb|EGB07947.1| hypothetical protein AURANDRAFT_26912 [Aureococcus anophagefferens]
          Length = 421

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/353 (34%), Positives = 184/353 (52%), Gaps = 26/353 (7%)

Query: 14  ALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRF 69
           AL E +G+   T +Q         ++DV+  A+TGSGKT+ FG+   S     LA   + 
Sbjct: 8   ALCEAKGWPGPTPIQAQCWPILCDDRDVVAVAETGSGKTLGFGMPALSKFKQALAGRGKR 67

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA     L +APTRELA Q    L+    K G   AV  GGV  H ++R++   A +V 
Sbjct: 68  QPA----MLVLAPTRELANQSFEVLQEFCGKVGATAAVAYGGVPKHEQKREIAKCAALVA 123

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-MFSAT 188
            TPGRL D I+   +++S +    LDEAD MLD+GF  +++ I  +     ++  MFSAT
Sbjct: 124 -TPGRLNDFIQEGSVDLSKVSFFCLDEADRMLDMGFVQEVKKIAAACANPEKLTAMFSAT 182

Query: 189 ISPAITTLAKNYQK-DAVRVNIASEN------RQHSDIDYRAVLVALSDRDNAIVNIL-- 239
               +  +A  + K D VRVN+ +E         +  ID   ++     RD  ++ IL  
Sbjct: 183 WPTEVQNIASEFLKPDFVRVNVGAERGADEGPEANKRIDQSVIVTEERSRDGRLLEILKQ 242

Query: 240 RYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           RY    +A       IVF   +   +R    L    ++ VA+ G++SQ  R+ A +  + 
Sbjct: 243 RYQSGTSASYATARLIVFGLYKKECARLETFLNSKKWKCVAIHGDMSQAARNQAFEDFKS 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G   + +ATDVAARG+D+P++ELV++       E+ +HR GRTGRAG+ G ++
Sbjct: 303 GAVPLLVATDVAARGLDIPNVELVVNFSFPLTIEDYVHRIGRTGRAGKTGTAI 355


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 189/347 (54%), Gaps = 16/347 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+ + L+ +G++N T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PQVL-DGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLT--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++++ +
Sbjct: 74  --TPAPEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVI 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           + G  I++GT GR+ D  +   ++   ++ VVLDEAD M DLGF  DI F+     +P +
Sbjct: 132 EAGVDILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMPAPAE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  + ++   V +   +++   +    +    +D   A++  L
Sbjct: 192 RLNMLFSATLSYRVQELAFEHMQEPEHV-VVEPDQKTGHLITEELFYPSNDHKMALLQTL 250

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + 
Sbjct: 251 IEEEWPDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKGEVDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+
Sbjct: 311 VATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSI 357


>gi|330826208|ref|YP_004389511.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311580|gb|AEB85995.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 590

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 200/387 (51%), Gaps = 51/387 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQE-----AILNPDL--REKDVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   T+VQE     A+   D+  R  D++VS+QTGSGKT AF L +  
Sbjct: 40  PELV-QAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAFLLPVLH 98

Query: 61  TLLA-----------------------------ENDRFSP-------ASAPLALAIAPTR 84
           TL+                               + R +P       A+ P AL + PTR
Sbjct: 99  TLIQQQADADAAARAEFERAAADAAARGEAPPKRSKRKNPTHPRNFKAATPGALVLCPTR 158

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + +E +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R   
Sbjct: 159 ELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQN-ANLVVATPGRLLDLQRSMQ 217

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     +
Sbjct: 218 IKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAMRVMHE 277

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
                 +V I +   +H++I         +     +++  LR      AIVF ST+    
Sbjct: 278 GGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFASTQVECD 337

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 338 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSITHVFN 397

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G++V
Sbjct: 398 FGLPMKAEDYTHRIGRTGRAGRDGLAV 424


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 189/343 (55%), Gaps = 10/343 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + + + G+ + T +Q       L+ +D++  A+TGSGKT+  G  +   +  + 
Sbjct: 161 FPSEILKEVLKAGFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTL--GYLIPGFIHLKR 218

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R  P   P  L ++PTRELA Q+  E    + K+  +   C+ GG     + ++L  GA
Sbjct: 219 CRNDPQLGPTVLVLSPTRELATQIQDEAV-KFGKSSRISCTCLYGGAPKGPQLKELDRGA 277

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + ++++ +K +VLDEAD MLD+GF   I  I+   P +R+ LM+
Sbjct: 278 DIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 337

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           +AT    +  +A +   + V+VNI +  E   +  I     L+A  ++   +  ILR   
Sbjct: 338 TATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQHVELLAPLEKHRRLEQILRSQE 397

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    +  + L    F   A+ G+ SQ ER + L   R GR+ + +AT
Sbjct: 398 PGSK-IIIFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDHVLSQFRTGRSPILVAT 455

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           DVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 456 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVA 498


>gi|50955595|ref|YP_062883.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952077|gb|AAT89778.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 531

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 188/388 (48%), Gaps = 10/388 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+  G      +Q   L   L  +DVL   +TGSGKT+AF L LA+ L A 
Sbjct: 10  GVPAALVSVLAADGKAEPFPIQAGTLPDTLAGRDVLGRGKTGSGKTIAFSLPLAARLGA- 68

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            DR   AS    P  L +APTRELA Q+   L  L A   +      GGVS +R+   L+
Sbjct: 69  -DRAGAASRGRRPRGLVLAPTRELATQIDATLAPLAAALDLRTTTIFGGVSQNRQVTALR 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVV  PGRL D ++   L++  ++  VLDEAD M DLGF   +  ILD +P   + 
Sbjct: 128 AGVDIVVACPGRLDDLMKQGILSLDAIEITVLDEADHMADLGFLPTVTRILDKTPAGGQR 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +  L K + +D V  ++         + +    VA ++    +VN L   
Sbjct: 188 LLFSATLDNGVDKLVKRFLRDEVLHSVDEATSHVEAMTHHVFEVAEAEAKKELVNAL-AS 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    I+F  T+    R  K L       V L G LSQ  R   L     G  RV +ATD
Sbjct: 247 GQGRRILFTRTKHQAKRLAKQLTSAGVPAVDLHGNLSQGARDRNLAAFGSGDVRVLVATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + D+ELV+H +  +  +  LHRSGRT RAG  G  V V+          L R 
Sbjct: 307 VAARGVHVDDVELVVHVDPPAEHKAYLHRSGRTARAGSAGDVVTVMLPEQAGDMRSLLRA 366

Query: 363 ANVSVVWEPAPS----VEAIRERDAQRI 386
           A ++   +   S    V A+    A+RI
Sbjct: 367 AAITTTPQKVTSRSEPVRALVGEPAERI 394


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 186/363 (51%), Gaps = 15/363 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  P   ++ E ++   +   T VQ+  +     ++D++  AQTGSGKT  F   + S 
Sbjct: 226 FEAPPLDPLLVENITLSRFTKPTPVQKYSVPIVCNKRDLMACAQTGSGKTGGFLFPVLSE 285

Query: 62  LLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
                    P            P  L +APTREL  Q+  E +    ++ V  AV  GGV
Sbjct: 286 CFMSGPAPQPEPTGAFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRSWVRPAVAYGGV 345

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            + ++ R LQ G  ++V  PGRL D +    +++ ++K +VLDEAD MLD+GF   I  I
Sbjct: 346 DIGQQIRTLQRGCDLLVAAPGRLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEPQIRHI 405

Query: 173 LDSSP----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +        + R+ LMFSAT    I  LA+++ KD V +++       ++I  + +LV  
Sbjct: 406 VQECDMPDVQDRQTLMFSATFPRNIQMLARDFLKDYVFLSVGRVGSTSANITQKVLLVED 465

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            ++ + I+++L        IVF  T+         L +  F   A+ G  +Q ER  AL 
Sbjct: 466 DEKRSVILDLLSAADNGLTIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYEREKALA 525

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++G A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++    
Sbjct: 526 AFKNGTAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNTGIATSFF 585

Query: 349 PQN 351
            +N
Sbjct: 586 NRN 588


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 186/358 (51%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 109 FPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 168 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGKSSRIRNTCVYGGVPKGGQIRDLAKGV 226

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL      R+  M+
Sbjct: 227 EVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMW 286

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA +Y  + ++VNI S   +  H       V+     RD    ++ +   
Sbjct: 287 SATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTKHLEKIME 346

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 347 DKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 406

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q++A  L
Sbjct: 407 DVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQKQARDL 464


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 208/440 (47%), Gaps = 20/440 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 296 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 355

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 356 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 415

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 416 QGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 475

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 535

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 536 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 595

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G            RA 
Sbjct: 596 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG------------RAI 643

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             F   + + + +P   V +  ++D    L++  F   + G        + A  D  K  
Sbjct: 644 SFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVDTRKNY 703

Query: 418 AGFLRIHRAGLCAPEEITPV 437
            G   ++ AG  + +   PV
Sbjct: 704 QGKSTLNTAGFSSSQAPNPV 723


>gi|289616811|emb|CBI56474.1| unnamed protein product [Sordaria macrospora]
          Length = 586

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 199/358 (55%), Gaps = 21/358 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
           N+ +   +A++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF    + + S+L
Sbjct: 120 NLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLSSL 179

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                RF P +   A+ + PTRELA+Q   V REL   +++T     V IGG +   E  
Sbjct: 180 -----RFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQT---YGVVIGGANRRAEAE 231

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G ++++ TPGRL DH++       +++++++DEAD +L++GF D++  I+   PK+
Sbjct: 232 KLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKE 291

Query: 180 -RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNA 234
            R+ ++FSAT +  +  LA+ + +   + VN+  E +Q S +   D   V+V    R   
Sbjct: 292 DRQTMLFSATQTTKVEDLARISLRPGPLYVNV-DEEKQFSTVEGLDQGYVVVDADKRFLL 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+    K  IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      +  
Sbjct: 351 LFSFLKKMQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAT 410

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQN 351
               I TDVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +  N
Sbjct: 411 QGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPN 468


>gi|71281141|ref|YP_268282.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
 gi|71146881|gb|AAZ27354.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
          Length = 468

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 200/372 (53%), Gaps = 9/372 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  GY  +T +Q   L   L+ KDV+  A+TGSGKT AFGLAL + L  +  R      
Sbjct: 25  LSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKLEVKKFRIQ---- 80

Query: 75  PLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             ++ I PTRELA QV +EL  L      + +    GG     +   L++GAH++VGTPG
Sbjct: 81  --SMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHVIVGTPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL +H+    L + +L  +VLDEAD ML++GF+  ++ I+  +P  R+ L+FSAT    I
Sbjct: 139 RLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSATFPDQI 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFCS 252
            +++++   D V V IAS   Q S I  +   V    DR +A+  +L  +  ++  +FC+
Sbjct: 199 KSISESIMTDPVMVKIASSEDQ-STISQKFFKVGNDDDRLDALRLLLLGNQVESTAIFCN 257

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L    F V+AL G+L Q++R   L    +  A + +ATDVAARG+D+  
Sbjct: 258 TKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDS 317

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L+LVI+  ++ + E  +HR GRTGRAG  G++  +       +   L       +  EP 
Sbjct: 318 LDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVITPEPL 377

Query: 373 PSVEAIRERDAQ 384
           PS+  +     Q
Sbjct: 378 PSLAVLSNERPQ 389


>gi|212379240|gb|ACJ24856.1| putative ATP-dependent RNA helicase [Streptomyces pactum]
          Length = 788

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G      +Q A +   +  +D+L   +TGSGKT++FGL L +TL   
Sbjct: 93  GLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGRDILGRGRTGSGKTLSFGLPLLTTLSGG 152

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 153 H---TEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERGV 209

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+F
Sbjct: 210 DILVATPGRLRDIIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLF 269

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL K Y  D V   +       S + +  ++V   D+      I    G  
Sbjct: 270 SATLENEIDTLVKRYLVDPVTHEVDPSAGAVSTMTHHVLVVKPKDKAPVTAAIAARKG-- 327

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 328 RTIIFVRTQLGADRVAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 387

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V
Sbjct: 388 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGV 447


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 183/363 (50%), Gaps = 24/363 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  +   + + GY   T +Q A +   L+ +D++  A+TGSGKT AF L L + +  L 
Sbjct: 276 LPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLAYISQLP 335

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +APTRELA Q+  E        G   AV +GG S+  +   +++G
Sbjct: 336 PLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRDG 395

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
           A I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  IL + P       
Sbjct: 396 AEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVNNEKPD 455

Query: 180 ---------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                          R+ +M++AT+ PA+  +AK Y +    V I +       ++ R  
Sbjct: 456 TEEAEDADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDTVEQRVE 515

Query: 225 LVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            +   ++    +  +   G  A   IVF + + +     + +    F    + G  +Q++
Sbjct: 516 FIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQ 575

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL  ++ G+  V +ATD+A RGID+PD+ LV++  + S+ E   HR GRTGR  +KG
Sbjct: 576 REAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRTGRQDKKG 635

Query: 343 MSV 345
            ++
Sbjct: 636 TAI 638


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 189/371 (50%), Gaps = 22/371 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +G AL+E      Y   T VQ   +   L  +D++  AQTGSGKT AF   + + ++   
Sbjct: 143 LGAALNENIRRCKYTKPTPVQRHAIPISLNGRDLMACAQTGSGKTAAFCFPIIAGIMRNT 202

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P     + PLAL ++PTREL  Q+  E +    +TG+ V VC GG  VH + R+L+
Sbjct: 203 PPGRPRGGRKALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPVHNQLRELE 262

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK- 178
            G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 263 RGVDILVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEPQIRRIVEQMDMPPAG 322

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  LA ++  + + + +         I  R   V  +D+ + ++++
Sbjct: 323 ERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDADKRSMLMDL 382

Query: 239 LRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE---LSQQERSNALQ 288
           +    A          +VF  T+         L    F    + G+      QER +AL+
Sbjct: 383 IHAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPTQEREHALR 442

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++    
Sbjct: 443 SFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGVATAFF 502

Query: 349 PQNMQRRAERL 359
            +  Q  A  L
Sbjct: 503 NEKDQSLARSL 513


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/328 (36%), Positives = 168/328 (51%), Gaps = 2/328 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G    + +Q   + P L  +DV   A TG+GKT+AF   L   LL       P  A
Sbjct: 49  LSRMGVRIPSPIQIQAIPPILSGRDVEGIAPTGTGKTIAFAAPLTQRLLGAPHERIPHVA 108

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + + ++PTRELA Q G         TG+ V V IGGV   R+ RDL+ GA I+V TPGR
Sbjct: 109 RI-ICLSPTRELANQTGGAWRGCAKGTGLKVVVTIGGVPRARQVRDLEAGADILVATPGR 167

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +    +      A+V+DEAD MLDLGF DD+  I    P   + L+FSAT+   I 
Sbjct: 168 LVDLLSDGAVVADATTALVVDEADRMLDLGFIDDMMSIASRLPVTHQTLLFSATMPAEIV 227

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L +      VRV + + +     I  + + +    +  A+V+ L  H ++  ++F  TR
Sbjct: 228 DLGRRLLHRPVRVKVDTADAPPPRIRQQVMFIPPRHKLGALVSFLSTHPSRRVLIFTETR 287

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                    L   +   V + GE +Q  R   L+  RD +  V IATDV ARGID+ D+ 
Sbjct: 288 RQADDLANALGREMTCGV-MHGEHTQARRERTLRDFRDHKLHVLIATDVMARGIDVEDVM 346

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
           LV++ ++    E  +HR GRT RAGR+G
Sbjct: 347 LVVNYDIPRQAEAYVHRIGRTARAGRQG 374


>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 472

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 196/347 (56%), Gaps = 13/347 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILN---PDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +AL ++   N   V  AI     P L E +DV   +QTGSGKT+A+ L +   L    
Sbjct: 11  INKALGDKLEANNIKVPSAIQAEAIPTLLEGRDVSARSQTGSGKTLAYLLPMLQQL---- 66

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               P+S  + A+ +APT+ELA+Q+ R  E      G+ V   IGG ++ R+   L+   
Sbjct: 67  ---KPSSGAIQAIILAPTQELAMQIVRVAEGYAEPLGLRVQQLIGGAAMKRQIEKLKLRP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ + ++ + L +S ++ +V+DEAD++ +LG   ++E IL +  ++R++  F
Sbjct: 124 QIVIGTPGRIHELLKLRKLKLSDVRHIVIDEADQVFELGSTREVETILFAMSQERQLAFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    +      + KD VR+ IA E R    I+   V+    D+ +A   I+R    +
Sbjct: 184 SATYPDVMARFEGRWMKDTVRIQIAPEQRVSETINNFYVVCDKRDKPDAARRIVRMLKPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++F +   +++ +   L+   F V  L G+  +Q R+  L   R+G+ ++ +ATDVAA
Sbjct: 244 SALLFLNVTENIANWEAKLSYEGFSVETLYGDSDKQRRAATLARFREGKTQLLLATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  L+LVI+ +   + ++ +HR+GRTGR GRKG  +  + PQ 
Sbjct: 304 RGLDIEGLQLVINLDPPIDADHYVHRAGRTGRMGRKGTVISLITPQE 350


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 123 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 182 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 240

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 241 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 300

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 301 SATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIME 360

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           G +N    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 361 GRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 420

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 421 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQAREL 480


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 191/365 (52%), Gaps = 7/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 384 SLKKHGYEKPTPIQAQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LEEGE 442

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      GV V    GG  +  +  +L+ GA I+V TPG
Sbjct: 443 GPIAVIMTPTRELALQITKECKKFSKTLGVRVVCVYGGTGISEQIAELKRGAEIIVCTPG 502

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 503 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 562

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++   ++   ++ +L +   + A I+
Sbjct: 563 RAMEALARRILNKPIEVQVGGRSVVCSDVEQNVIVIEEENKFLKLLELLGHFQEQGAVII 622

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   + G  ++ +AT VAARG+D
Sbjct: 623 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKSGVCKLLVATSVAARGLD 682

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 683 VKHLMLVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGT- 741

Query: 370 EPAPS 374
            P PS
Sbjct: 742 -PVPS 745


>gi|290958777|ref|YP_003489959.1| RNA helicase [Streptomyces scabiei 87.22]
 gi|260648303|emb|CBG71414.1| putative RNA helicase [Streptomyces scabiei 87.22]
          Length = 446

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 183/361 (50%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + E L   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 27  GLPGRLLETLRAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 87  --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARALRLRLATVVGGMSIGRQASALRGGA 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + L+F
Sbjct: 144 EVVVATPGRLKDLIDRADCRLDQVAITVLDEADQMADMGFMPQVTALLDQVRPGGQRLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L ++Y  D V  ++       + +D+  + +   D+      I    G  
Sbjct: 204 SATLDRNVDRLVRDYLHDPVVHSVDPSAGAVTTMDHHVLHIEDDDKHATTTEIAAREG-- 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  ++ +  R  K L     +  AL G  SQ +R+ AL   +DG     +AT+VAA
Sbjct: 262 RVIMFLDSKHATDRLVKKLLAVGVRAAALHGGKSQSQRNRALSQFKDGDVTALVATNVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 322 RGIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRRDVTRLMAVAGI 381

Query: 366 S 366
           +
Sbjct: 382 T 382


>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 442

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 178/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T +Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
            I   A+    + V +      R+   I    YRA    L  +   ++++L+      +I
Sbjct: 195 NIRDFAERLLNEPVELEADPSRRERKKIQQWYYRAD--DLQHKTKLLIHLLQQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  +      L E   +   L GE+ Q +R+ A++ + +GR  V +ATD+AARGI
Sbjct: 253 VFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLV 352


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 191/363 (52%), Gaps = 5/363 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 329 SLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 387

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 388 GPIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 447

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 448 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 507

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      V V +   +   SD++ + +++   ++   ++ +L  Y  + + I+
Sbjct: 508 RAMEALARRILNKPVEVQVGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGSVII 567

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   + G  ++ +AT VAARG+D
Sbjct: 568 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKSGTCKLLVATSVAARGLD 627

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 628 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGHAFTFITEDQARYAGDIIKALELSGTA 687

Query: 370 EPA 372
            PA
Sbjct: 688 VPA 690


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/319 (33%), Positives = 177/319 (55%), Gaps = 10/319 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD++  A+TGSGKT  F +     +L+     S       L ++PTRELA+Q+   ++ L
Sbjct: 162 KDMVGVAETGSGKTFTFAVPALEHVLST----SGGKGVRVLVVSPTRELAMQIYDNIKEL 217

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G+      GGV   ++R DL+  A  V+ TPGRLCD I     ++S +  +VLDEA
Sbjct: 218 CDVVGLHAVCVYGGVPKEQQRSDLKR-ASFVIATPGRLCDLIDEGSCDLSKVSYLVLDEA 276

Query: 158 DEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           D ML+ GF +DI+ I+ S+ P  R+ +MFSAT  P +  LA+ + K   +V I   +   
Sbjct: 277 DRMLEKGFEEDIKKIIGSTRPTGRQTVMFSATWPPEVRKLAEGFMKTPTKVMIGERDELA 336

Query: 217 SDIDYRAVLVALSDR--DNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVV 272
           ++      +  L  R  +  ++++LR +   +   ++F   +   +R    L    + V 
Sbjct: 337 ANKRITQSVEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTLTRRGYGVA 396

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G+LSQQ+R+ AL   + G   + +ATDVAARG+D+P+++LVI+       E+ +HR 
Sbjct: 397 AIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRI 456

Query: 333 GRTGRAGRKGMSVFVIPQN 351
           GRTGRAG+ G ++ +  ++
Sbjct: 457 GRTGRAGKTGQAITLFTEH 475


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 183/363 (50%), Gaps = 24/363 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  +   + + GY   T +Q A +   L+ +D++  A+TGSGKT AF L L + +  L 
Sbjct: 276 LPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLAYISQLP 335

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +APTRELA Q+  E        G   AV +GG S+  +   +++G
Sbjct: 336 PLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRDG 395

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
           A I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  IL + P       
Sbjct: 396 AEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVSNEKPD 455

Query: 180 ---------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                          R+ +M++AT+ PA+  +AK Y +    V I +       ++ R  
Sbjct: 456 TEEAEDPDAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDTVEQRVE 515

Query: 225 LVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            +   ++    +  +   G  A   IVF + + +     + +    F    + G  +Q++
Sbjct: 516 FIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQ 575

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL  ++ G+  V +ATD+A RGID+PD+ LV++  + S+ E   HR GRTGR  +KG
Sbjct: 576 REAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRTGRQDKKG 635

Query: 343 MSV 345
            ++
Sbjct: 636 TAI 638


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 209/404 (51%), Gaps = 23/404 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E L ++G    T VQE  L    + +D+L  AQTG+GKT+AF       LL    + 
Sbjct: 13  ILCELLKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAF-------LLPALQQI 65

Query: 70  SP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            P       L +APTRELA Q+      L A   + +   IGG ++  + + LQ    ++
Sbjct: 66  HPDQHQEQVLILAPTRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQKLQRHPQMI 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL DH R   LN++ +  +++DEAD++L  GF +D++ +L  +PK+R++L FSAT
Sbjct: 126 IGTPGRLLDHCRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGMTPKRRQLLFFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +   I +LAK +  +    ++    +     I+ R  ++    + + +  +L       +
Sbjct: 186 VPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKLLHEMNPYLS 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC+T+   S     L    F V  L G+LSQ  R+  L+     + ++ +ATD+AARG
Sbjct: 246 VIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQLLVATDIAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR--- 361
           +D+  +  V + ++  + +  +HR GRTGRAG +G++V +     ++  RR E   R   
Sbjct: 306 LDIAGITHVFNYDVPHDIDYYIHRIGRTGRAGNEGLAVTLATAADEDWVRRIEHAIRATI 365

Query: 362 ---EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
               A+  +  + AP+         +RI +D L + + Q  ++K
Sbjct: 366 TKYTASGKIQVKQAPTAP-----KKKRIYKDKLPVATYQATKEK 404


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/378 (32%), Positives = 194/378 (51%), Gaps = 36/378 (9%)

Query: 4   FENIP-QVIGEALSERGYVNLTSVQEAILNPD------------------------LREK 38
           ++NIP    G   S  GY  +TS  E  L+P                         ++ +
Sbjct: 190 YDNIPVNTTGPQWSHDGYTGVTSFLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRR 249

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA------PLALAIAPTRELAVQVGR 92
           D++  AQTGSGKT AF + L S +  +    S + +      P+AL +APTRELAVQ+  
Sbjct: 250 DLMACAQTGSGKTAAFLIPLLSMMYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYD 309

Query: 93  ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
           E      ++ V   V  GG  +  + +D+  G +++V TPGRL D +    + +  ++ +
Sbjct: 310 EARKFSYRSLVRPCVVYGGRDIRGQLQDISQGCNMLVATPGRLSDMLERCKIGLDCIRYL 369

Query: 153 VLDEADEMLDLGFRDDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQKDAVRVN 208
           VLDEAD MLD+GF   I  I++ +    P +R+ LMFSAT    I  LA ++ KD + + 
Sbjct: 370 VLDEADRMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPREIQMLASDFLKDYLFLR 429

Query: 209 IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEH 267
           +        +I  R V V  +++ + +++IL    + + I VF  T+         L   
Sbjct: 430 VGKVGSTSQNITQRIVYVDENEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTE 489

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
              V ++ G+ SQ +R  ALQ  R+G   + +AT VAARG+D+P+++ VI+ +L ++ E 
Sbjct: 490 GSCVASIHGDRSQSDRELALQSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEE 549

Query: 328 LLHRSGRTGRAGRKGMSV 345
            +HR GRTGR G  G ++
Sbjct: 550 YVHRIGRTGRVGNLGEAI 567


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 182/340 (53%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  + P  + +D++  A +GSGKT AF + L           S       L
Sbjct: 42  GYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQVCQ------SALRETQGL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q       +    G+     IGG SV  + R L++G  IV GTPGR+ D 
Sbjct: 96  VLSPTRELAMQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLESGVQIVSGTPGRVFDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L ++HLK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + +
Sbjct: 156 IKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPP-LQVVLVSATLPVDVLEMTE 214

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCSTR 254
            +  + VR+ +    R    +D      VA+ +  N    +   +      +A++FC+TR
Sbjct: 215 KFMTEPVRILV---RRDEITVDSIMQYFVAVDEEKNKFETLCDLYDTLTIAHAVIFCNTR 271

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+TD+ +RGID+  + 
Sbjct: 272 KKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLISTDLWSRGIDVEQVS 331

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R
Sbjct: 332 LVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELR 371


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 194/365 (53%), Gaps = 9/365 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   P 
Sbjct: 14  DALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNNL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            +   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DSINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVTYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA N   +   V +A    + +D   +A  V   ++   I+ N+      +  I
Sbjct: 191 PTKIQQLANNILNNPAEVKLAVS--KPADKIVQAAYVCYENQKLGIIRNLFAEQTPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R + +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   + + +     + 
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQTNFKNIEKFLEKDIY 368

Query: 369 WEPAP 373
             P P
Sbjct: 369 KIPVP 373


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PLVV-EALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L
Sbjct: 75  ---PAPEGRQVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           +NG  I+VGT GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ENGVDILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPAATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLV 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSI 357


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 185/361 (51%), Gaps = 23/361 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P  + E +    +   T VQ+  +   L  +D++  AQTGSGKT AF   + ++
Sbjct: 146 FEDLQLPACMMENIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPIIAS 205

Query: 62  LLAENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           +L +   + PA+        P AL +APTREL  Q+  E       TG+   V  GG   
Sbjct: 206 MLMKG--YQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAPA 263

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL- 173
             + RDL+ G  I+V TPGRL D I    + +S +  + LDEAD MLD+GF   I  I+ 
Sbjct: 264 PNQLRDLERGCDILVATPGRLSDFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIVE 323

Query: 174 --DSSP-KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             D  P   R+ LMFSAT    I  LA ++  + V + +         I      V   +
Sbjct: 324 QEDMPPVGHRQTLMFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPEE 383

Query: 231 RDNAIVNIL------RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           + N +++++      R  G    +VF  T+       ++L  +     ++ G+ SQ++R 
Sbjct: 384 KQNTLLDLISTVEVSRRQGL--TLVFVETKRGADELERILTRNQLPATSIHGDRSQEQRE 441

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL+  + G+  V +ATDVAARG+D+P +  VI+ +L  + ++ +HR GRTGRAG KG++
Sbjct: 442 MALRSFKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLA 501

Query: 345 V 345
            
Sbjct: 502 T 502


>gi|91201977|emb|CAJ75037.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 407

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 6/359 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL + GY  +T +QEA         D+   A+TGSGKT A  + L   +    D   
Sbjct: 12  ILKALDKMGYNEMTPIQEATYPIIFAGHDLCALAETGSGKTAACAIPLIQKVDPSLD--- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L I PTREL +Q   E+  + AKT V+     GG     +   ++   HI+V 
Sbjct: 69  ---AIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFDRAAQIARVKQTVHILVA 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +    L+ + +K V+LDEADE+L +GF +DIEFIL     K + L+FSAT+ 
Sbjct: 126 TPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHKHQTLLFSATMP 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L ++   +   +++ ++      I++    V    +   +V  L+      A++F
Sbjct: 186 DDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFSYVNPKQKHEELVKYLKGEEVNQALIF 245

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ R  V    ++L +    +  +   L+Q +RS+ ++  R  + R  IA+DVA RG+D 
Sbjct: 246 CNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLIASDVAGRGLDF 305

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
             +  VI+ ++  + E   HR+GR GR GRKG++  ++ +       ++     +S  W
Sbjct: 306 SHVSHVINWDMPRDGEQYTHRTGRAGRMGRKGIAFTLVAKKDLSLLSKVISSRKISPCW 364


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 180/357 (50%), Gaps = 4/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   ++  GYV  T++Q       L   D+   A+TGSGKT+AF L     ++A+ 
Sbjct: 62  IPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSIIHIMAQP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P   P+A+ +APTRELA QV    E      GV      GG     +   L+ GAH
Sbjct: 122 D-LRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALERGAH 180

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL D I+    N+     ++LDEAD MLD+GF   I  I+    + R+ LMFS
Sbjct: 181 IVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFS 240

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GA 244
           AT    I  LA ++ K   ++ I ++    ++ +   V+  +SD D A+     +    +
Sbjct: 241 ATWPKEIQKLASDFMKTPTQIFIGNQELT-ANPNIEQVVEVVSDFDKAMRFNYWFQQITS 299

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         ++    +  A+ G+  Q+ER   L+  R+G+  V +ATDVA
Sbjct: 300 PKILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVA 359

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+ D+  VI+ +  S  E+ +HR GRT R  +KG S+  I     + A  L +
Sbjct: 360 ARGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHASALVK 416


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 148 FPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 206

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 207 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLTRGV 265

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 266 EVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 325

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++ +D ++V I S++    H       V+     RD  I ++ R   
Sbjct: 326 SATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIME 385

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 386 DKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 445

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +      ++A  L +
Sbjct: 446 DVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQARDLVK 505


>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 440

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 186/352 (52%), Gaps = 20/352 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L        TS+Q A +   L+  D +  A+TGSGKT+AF   + +      D F 
Sbjct: 12  LSESLDAMKIYTPTSIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTRW--SEDPF- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+  +   L A   + VAV +GG    ++   LQ   H V+ 
Sbjct: 69  ---GIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIA 125

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           TPGRL DHI   G      +  +K +VLDEAD +L   F  D++   D  P   KR+ L+
Sbjct: 126 TPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPPSDKRQTLL 185

Query: 185 FSATISPAITTLAKNYQ---KDAV---RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           F+ATI+ A+  L +      K  V    V    +    S +    V V    ++  + +I
Sbjct: 186 FTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEAYLNSI 245

Query: 239 LRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           L     K+  A++F +   +     ++L +  F+V +L  E+ Q ER+N+L   + G AR
Sbjct: 246 LHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAAR 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + IATDVA+RG+D+P +ELVI+ ++ ++P++ +HR GRT RAGRKG +V +I
Sbjct: 306 ILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSII 357


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 139 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 197

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 198 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 256

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 257 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 316

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 317 SATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIME 376

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           G +N    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 377 GRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 436

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 437 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQAREL 496


>gi|222144592|gb|ACM46113.1| DDX3/PL10 DEAD-box RNA helicase [Schmidtea polychroa]
          Length = 458

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 183/337 (54%), Gaps = 14/337 (4%)

Query: 45  QTGSGKTVAFGLALASTLLAENDRFSPASA------PLALAIAPTRELAVQVGRELEWLY 98
           QTGSGKT AF + L + +  +    S +        P+AL +APTRELA+Q+  E     
Sbjct: 1   QTGSGKTAAFLIPLLNMMYNDGPGNSLSRTGYKKEYPVALILAPTRELALQIYEEARKFS 60

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
            ++ V   V  GG  +  + +DL  G +++V TPGRL D +    + +  ++ +VLDEAD
Sbjct: 61  YRSLVRPCVVYGGADIRNQLQDLSQGCNMLVATPGRLSDMLERCRIGLDCIRYLVLDEAD 120

Query: 159 EMLDLGFRDDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
            MLD+GF   I  I++ +    P +R+ LMFSAT    I  LA ++ +D + + +     
Sbjct: 121 RMLDMGFEPQIRKIVEQTNMPPPGQRQTLMFSATFPKEIQMLASDFLQDYLFLRVGKVGS 180

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVA 273
              +I  R V V  S++ + +++IL    +++ I VF  T+         L    F+V +
Sbjct: 181 TSQNITQRIVYVDESEKRDHLLDILADIDSESLILVFVETKRGADSLEGFLHGEGFRVAS 240

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+ SQ +R  ALQ  RDGR  + +AT VAARG+D+P+++ VI+ +L ++ E  +HR G
Sbjct: 241 IHGDRSQSDRELALQCFRDGRTPILVATAVAARGLDIPNVKFVINYDLPTDIEEYVHRIG 300

Query: 334 RTGRAGRKGMSVFVIP---QNMQRRAERLFREANVSV 367
           RTGR G  G ++        N+ +    +  EAN +V
Sbjct: 301 RTGRVGNLGEAISFYTDKNNNVAKELVDILLEANQTV 337


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 186/359 (51%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 133 FPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 192 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 250

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 251 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 310

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRD---NAIVNILR 240
           SAT    +  LA+++  D ++VNI S +    H       ++     RD     +  I+ 
Sbjct: 311 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIME 370

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 371 DNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 430

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 431 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 489


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 186/359 (51%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 133 FPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 192 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 250

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 251 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 310

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRD---NAIVNILR 240
           SAT    +  LA+++  D ++VNI S +    H       ++     RD     +  I+ 
Sbjct: 311 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAKHLDRIME 370

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 371 DNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 430

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  ++A  L
Sbjct: 431 TDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 489


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 180/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L  A  L+  + R        AL
Sbjct: 53  GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT-ACQLVDTSSR-----EVQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     +    CIGG SV  + R L+ G H+V GTPGR+CD 
Sbjct: 107 ILSPTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 167 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEMTS 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +++ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 227 KFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 286

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +  + F V ++ G++ Q+ER   +   + G  RV I TDV ARG+D+  + LVI
Sbjct: 287 DWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGTTRVLITTDVWARGLDVQQVSLVI 346

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 347 NYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|309812379|ref|ZP_07706134.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308433684|gb|EFP57561.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 522

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 184/361 (50%), Gaps = 5/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+ + L + G    T +Q A L   L+ +DVL   +TGSGKT AF L L + L  + 
Sbjct: 9   VPAVLVKTLDKLGIDTPTPIQAATLPDSLKGRDVLGRGRTGSGKTFAFLLPLVARL--DE 66

Query: 67  DRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R+   A  P +L +APTRELA Q+   L+ L A  G+      GGV  + + + L+ G 
Sbjct: 67  TRYEIDAYRPRSLVLAPTRELANQIADSLKPLAAAAGLSYTTVFGGVGQNPQVKALKAGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++  PGRL D +     ++S ++  +LDEAD M D+GF   ++ IL   P++ + L+F
Sbjct: 127 DVLIACPGRLEDLMSQGFCDLSDVEVCILDEADHMADMGFLPGVKRILTKVPREAQHLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K +  + V     S     + +++    V    R + + +++   G  
Sbjct: 187 SATLDGGIDVLVKKFLSNPVTHQADSAQSPVATMEHHVFAVDSDSRIDVLTDLVSAPG-- 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  K LA      V L G LSQ  R   L     G     +ATD+AA
Sbjct: 245 RTVVFTRTKHGAKKLAKQLAGRGIPAVDLHGNLSQNARVRNLDAFHSGAVETLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+HA+  +  +  LHRSGRT RAG  G  + ++  + +   + L R A +
Sbjct: 305 RGIHVDDVSLVVHADPPTEHKAYLHRSGRTARAGAAGTVITLMTPDQRGDVKSLLRMAKI 364

Query: 366 S 366
           +
Sbjct: 365 N 365


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 188/351 (53%), Gaps = 13/351 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           GY   +++Q   + P +  KD +  AQ+G+GKT AF + +         R   A  +P A
Sbjct: 39  GYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQ-------RIDIAMKSPQA 91

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + ++PTRELA+Q  + +E + ++  V VA CIGG  V  +    Q+  H++V TPGRL  
Sbjct: 92  IILSPTRELALQTLKVVEGIGSRLQVEVAQCIGGTQVDDDITAAQS-CHLIVATPGRLLS 150

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            ++ K +  S++K V+LDEADEML  GF + I  I+       ++++ SAT+ P I  L 
Sbjct: 151 LLQKKYVTTSNVKMVILDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELT 210

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFCSTRA 255
           + + +D V + +         I  R  +V L D  +   + +I +    +  ++FC++ A
Sbjct: 211 RQFMRDPVSILVKEAELTLDGI--RQYVVELQDAWKTEVVEDIYKVLSVQQGVIFCNSIA 268

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ ARGID+ ++ L
Sbjct: 269 RVKELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSL 328

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           VI+ ++    E  LHR GR+GR GRKG+++  +    ++  + +  + NV+
Sbjct: 329 VINYDIPREAETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQSITDKFNVT 379


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 182/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D+   AQTGSGKT  F   + S          P S          P A+ +APTRELA 
Sbjct: 180 RDLKACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELAT 239

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+++ G  ++V TPGRL D +    +++++
Sbjct: 240 QIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLAN 299

Query: 149 LKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+   D +P  +R+ LMFSAT    I  LA+++  D 
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDY 359

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   D+ +A++++L        ++F  T+    + T  L
Sbjct: 360 IFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL 419

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+  A+ G+ +Q ER  AL   R G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 420 IMQNFRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSD 479

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSV 367
            ++ +HR GRTGRAG  G++         N+ +    +  EAN  V
Sbjct: 480 VDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEV 525


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 182/340 (53%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  + P  + +D++  A +GSGKT AF + L           S       L
Sbjct: 42  GYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQVCQ------SALRETQGL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q       +    G+     IGG SV  + R L++G  IV GTPGR+ D 
Sbjct: 96  VLSPTRELALQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRRLESGVQIVSGTPGRVFDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L ++HLK +VLDEADEML  GF+  I  I    P   ++++ SAT+   +  + +
Sbjct: 156 IKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPP-LQVVLVSATLPVDVLEMTE 214

Query: 199 NYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA---KNAIVFCSTR 254
            +  + VR+ +    R    +D      VA+ +  N    +   +      +A++FC+TR
Sbjct: 215 KFMTEPVRILV---RRDEITVDSIMQYFVAVDEEKNKFETLCDLYDTLTIAHAVIFCNTR 271

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+TD+ +RGID+  + 
Sbjct: 272 KKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLISTDLWSRGIDVEQVS 331

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R
Sbjct: 332 LVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELR 371


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 181/343 (52%), Gaps = 17/343 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL--- 76
           Y   T VQ+  +      +D++  AQTGSGKT AF L + S L  +     P        
Sbjct: 191 YHKPTPVQKHAIPIIHSRRDLMACAQTGSGKTAAFLLPILSNLWKQGPAVPPPRPSGPGG 250

Query: 77  ---------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                    AL +APTRELAVQ+  E      ++G+   V  GG  + ++ RD++ G  +
Sbjct: 251 YRRQKTHIEALVLAPTRELAVQIYEEARKFSYRSGIRACVVYGGTDIGQQLRDIERGCQL 310

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRML 183
           +V TPGRL D +    +++ + + VVLDEAD MLD+GF   I  I++ +      +R+ML
Sbjct: 311 LVATPGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQIREIVEKNDLPAMGERQML 370

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++ +D + + +        +I  + + V   D+ + ++++L   G
Sbjct: 371 MFSATFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLIWVDEHDKRSMLLDLLSAAG 430

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   + F  T+ +       L    F   ++ G+ SQ+ER +AL+  R G   + +AT 
Sbjct: 431 PECLTLCFVETKRAADSLEDFLYHEGFPAASIHGDRSQREREDALRTFRSGHTPILVATA 490

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+P+++ VI+ +L +  +  +HR GRTGR G  G+S 
Sbjct: 491 VAARGLDIPNVKHVINYDLPTEIDEYVHRIGRTGRVGNLGLST 533


>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 608

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 178/341 (52%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           I +A+ E+GY   T++Q   +   L   D+L  AQTG+GKT AF L L   L    +  +
Sbjct: 32  IVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLLHRLSMSRSAQN 91

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F   +   AL + PTRELA QV   +        +   V  GGV ++ +   ++ G  I
Sbjct: 92  KFG-GTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQISKVKKGVDI 150

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   L++  ++ +VLDEAD MLD+GF  D++ +L   PK+++ L+FSA
Sbjct: 151 LVATPGRLLDLAQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLALVPKEKQSLLFSA 210

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA    K+   V +   N     I      V    +   + +I+        
Sbjct: 211 TFSDEIRELANGLLKNPQSVQVTPRNTTVQRITQVIHPVGRGKKKALLAHIINEQNWSQV 270

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +ATD+AARG
Sbjct: 271 LVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALSGFKSGDVRALVATDIAARG 330

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ DL  V++ E+ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 331 IDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLV 371


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 191/375 (50%), Gaps = 30/375 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 300 LPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 359

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++    P AL +APTREL  Q+  E +      G  V   +GG S+  +   L+NG
Sbjct: 360 PLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNG 419

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I+V TPGRL D +  + L  S     ++DEAD M+D GF + +  ILD+ P       
Sbjct: 420 AEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNEKPD 479

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             + R+ +M++AT+ P +  +AK Y +    V I +       +
Sbjct: 480 TDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGNAGEAVDTV 539

Query: 220 DYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   V+  D R   +  IL     K   IVF + + +     + +    +  V L G 
Sbjct: 540 EQRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHGS 599

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R+G+  + +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 600 KTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 659

Query: 338 AGRKGMSV-FVIPQN 351
           AG+ G+++ F+ P++
Sbjct: 660 AGKSGVAITFLGPED 674


>gi|328881710|emb|CCA54949.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/381 (33%), Positives = 194/381 (50%), Gaps = 14/381 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L E+G      +Q A L   L  +DVL   +TGSGKT+AFGLAL   L   
Sbjct: 15  DMPEGLLRTLGEQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LART 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + + APLAL + PTRELA QV   L    A   + +   +GG+S+ R+   L+ GA
Sbjct: 72  AGRRAESGAPLALVLVPTRELAQQVTDALTPYAAALRLRITTVVGGMSISRQSSALRRGA 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       + L+F
Sbjct: 132 EVLIATPGRLHDLIDRGDCRLDQVAVTVLDEADQMADMGFLPQVTKLLKQVEPGGQRLLF 191

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K +  D V  ++       + +++  VL  + + D   V +       
Sbjct: 192 SATLDRNVDRLVKMFLDDPVVHSVDPSAGAVTTMEHH-VLYVMDETDKKAVTLKIAARDG 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ SV R  K L  +  +   L G  SQ +R+  L   + G+    +AT+VAA
Sbjct: 251 RTILFLDTKRSVDRLVKRLLANGVRASGLHGGRSQPQRNRTLDQFKSGQVTTLVATNVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF--VIPQNMQRRAERLFREA 363
           RGI + DL++V++ +   + ++ LHR GRT RAG  G SVF  V+P+  +R   RL   A
Sbjct: 311 RGIHVDDLDMVVNVDPPMDHKDYLHRGGRTARAGESG-SVFTLVLPEQ-KRDMGRLMSHA 368

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            +S      P    I+  D Q
Sbjct: 369 GIS------PRTAQIKSSDEQ 383


>gi|297806937|ref|XP_002871352.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297317189|gb|EFH47611.1| dead box RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 558

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 179/347 (51%), Gaps = 20/347 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAENDRFSPAS 73
           G+  +T VQEA L   L+ KD+L  A+TG+GKTVAF L      + S   + ++R  P  
Sbjct: 94  GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKSPPASRDNRHPPI- 152

Query: 74  APLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGT 131
             + L + PTRELA Q   E   L      + V V IGG  +  E+R LQ     I+V T
Sbjct: 153 --IVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVAT 210

Query: 132 PGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGRL DHI    G    +  +K +VLDEAD +LD+GFR +IE I+ + PK+R+  +FSAT
Sbjct: 211 PGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSAT 270

Query: 189 ISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +   +  +     ++D   VN   E     H  +    ++ +L    + +  +L+ H A 
Sbjct: 271 VPEEVRQMCHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHIAD 330

Query: 246 NA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           N     I+FC+T         +L +    V  +     Q  R+      R  ++ + + +
Sbjct: 331 NVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTS 390

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 391 DVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 437


>gi|297159148|gb|ADI08860.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 652

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   +   D+L   +TGSGKT++FGL L +TL   +
Sbjct: 53  LPEQIVRKLAQNGVTTPFPIQAATIPDAMAGSDILGRGRTGSGKTLSFGLPLLTTLAGGH 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 113 ---TEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERGVD 169

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+FS
Sbjct: 170 ILVATPGRLRDIIDRGAASLDKVQVAVLDEADQMADMGFLPEVTEILDQVPQGGQRLLFS 229

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  D +   +       S + +  ++V   D+      I    G   
Sbjct: 230 ATLENEIDTLVKRYLVDPITHEVDPSAGAVSTMTHHVLVVKPKDKAPVTAAIAARKG--R 287

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 288 TIIFVRTQLGADRVAEQLRDAGVRAEALHGGMTQGARTRTLADFKDGYVNVLVATDVAAR 347

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V
Sbjct: 348 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGV 406


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 186/351 (52%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
           N+  V+ E +   GY   T VQ   +   L  +D++  AQTGSGKT ++ + A+   LL 
Sbjct: 121 NMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAINEILLN 180

Query: 65  ENDR--FSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++R  +SP S  +P AL +APTREL++Q+  E       T V   V  GG     +  +
Sbjct: 181 ISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHE 240

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---- 176
           L  G  ++V TPGRL D      +  S ++ ++LDEAD MLD+GF   I  I+       
Sbjct: 241 LSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDM 300

Query: 177 PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P+  +R+ L++SAT    I  LA+ +      + +        +I      +   D+  A
Sbjct: 301 PRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQA 360

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +LR +  K  +VF   +       + L       V++ G+  Q+ER  AL++ + G 
Sbjct: 361 LLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGA 420

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +V +ATDVA+RG+D+P++ +VI  ++ SN ++ +HR GRTGRAG+ G+++
Sbjct: 421 CQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAI 471


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 182/347 (52%), Gaps = 8/347 (2%)

Query: 4    FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            F   P+++ E + + G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 1092 FHKYPEIL-EEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHID 1150

Query: 64   AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQ 122
             +N + S    P  L +APTRELA+Q+ +E++  Y   G+  AVCI G    RE+ + L 
Sbjct: 1151 GQNIKKSERGGPAVLVMAPTRELALQIDKEVK-KYEYKGIT-AVCIYGGGNRREQIKVLT 1208

Query: 123  NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            +G  IV+ TPGRL D      L + ++  VVLDEAD MLD+GF   I  ++ S    R+ 
Sbjct: 1209 DGVDIVIATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQT 1268

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
            +M SAT  P +  LA++Y  D +++ + + +   +    + + +   D        + + 
Sbjct: 1269 VMTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFA 1328

Query: 242  ---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 ++  I FC  +A     +  L     Q   + G+  Q +R  AL  + DG  ++ 
Sbjct: 1329 TNLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQIL 1388

Query: 299  IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAG+ G S+
Sbjct: 1389 IATDVASRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSI 1435


>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 407

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 186/344 (54%), Gaps = 12/344 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT AF L     LL +  R  
Sbjct: 14  LNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPALQHLL-DFPRRK 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P    + L + PTRELA+QV    + L A T + +   IGGVS   +   L     IVV 
Sbjct: 73  PGPCRM-LVLTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTKTTDIVVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I++ +  ++  ++FSAT+ 
Sbjct: 132 TPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVEEARYRKHTMLFSATLE 191

Query: 191 PA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGA 244
            A +   A +  K+ V ++      +   I      V L+D D A     +V+IL+    
Sbjct: 192 GAGLEKFANDILKEPVELHAEPPRSERRPITQ---WVHLAD-DAAHKLALLVHILKDPET 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F  TR  ++  +  L         + GE+ Q +R  +++   +G     IATDVA
Sbjct: 248 QKAIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPFLIATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++
Sbjct: 308 ARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLV 351


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 176/329 (53%), Gaps = 1/329 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A + L 
Sbjct: 21  YQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRARV-LV 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV +          + +    GGVS++ +   L+ G  ++V TPGRL D  
Sbjct: 80  LVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLN 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT S  I  +A  
Sbjct: 140 RQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQRQTLLFSATFSDDIRAMAAG 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             +  V+++++  N     I    V V   ++ +  ++++  +  K+A+VF  TR  V  
Sbjct: 200 ILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMHLVAENDWKHALVFVKTRKGVDY 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
              +L E  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+D+  L LVI+ 
Sbjct: 260 LAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHMLVATDVAARGLDINGLPLVINV 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 320 DLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 189/361 (52%), Gaps = 9/361 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 132 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 190

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 191 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 249

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 250 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 309

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  +A ++ +D ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 310 SATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMD 369

Query: 244 AKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            K++    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 370 GKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 429

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++        ++A  L
Sbjct: 430 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDL 489

Query: 360 F 360
            
Sbjct: 490 L 490


>gi|313203400|ref|YP_004042057.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442716|gb|ADQ79072.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 449

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 188/343 (54%), Gaps = 12/343 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI Q I   L   G  +L ++Q A +  D +++DV++ + TGSGKT+A+ + L   LL+ 
Sbjct: 12  NIAQ-IDNTLKSMGIESLNAMQAATIAADEKDQDVILLSPTGSGKTLAYLIPL---LLSL 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N       A   L + PTRELA Q+  E  W    TG  V +C GG   + E+R+L    
Sbjct: 68  NPDIQKVQA---LVLVPTRELAQQI--EQVWRSMSTGYKVNICFGGRPSNAEKRELAFPP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++GTPGRL DHI      I  ++ +VLDE D+ L++GF D +E I+   P   + ++ 
Sbjct: 123 AVLIGTPGRLQDHIERANFEIDAIRTLVLDEFDKSLEMGFTDQMEAIISRIPALNKRILT 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT + AI        ++ +R++ + ++R  + +   ++    +D+ + +  +L Y G  
Sbjct: 183 SATDAVAIPPFTG--IQNPIRLDFSEKDRVLAGLKIFSIKGNNNDKMDLLYRLLCYLGND 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+ R +V + +  L     +     G+L Q ER  AL   R+G     I+TD+A+
Sbjct: 241 SSLVFCNQRDTVEKVSAYLTNRKLKNEFFHGKLEQPERERALSKFRNGSCTTFISTDLAS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+P++  VIH ++    +  +HR+GRT R   +G S FV+
Sbjct: 301 RGLDIPEIRNVIHFDVPVRNDEFIHRNGRTARMSTEG-SAFVL 342


>gi|261251704|ref|ZP_05944278.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938577|gb|EEX94565.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 412

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/332 (34%), Positives = 176/332 (53%), Gaps = 10/332 (3%)

Query: 18  RGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           +G+   T +Q A+  P+L   KDVL  A TGSGKT+A+GL L   L A+  +        
Sbjct: 18  QGFQKPTDIQ-ALAIPELMAGKDVLALANTGSGKTLAYGLPLLEKLKADTKQ-------Q 69

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA+QV   L  +    G+      GGV    +++ L +  +I+V T GRL 
Sbjct: 70  ALVLVPTRELAIQVSEALNQVGQTLGLNAVCLCGGVDKELQQQALADSPNILVATTGRLV 129

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +   GL++S +  +VLDEAD +LD+GF  D++ I      KR+  MFSAT S  +   
Sbjct: 130 D-LANNGLDLSQVDYLVLDEADRLLDMGFWPDVQTIASQVSAKRQTAMFSATFSDDLKQK 188

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+       +V    EN  + DI     LV    +  A++ +++ +     +VF   + +
Sbjct: 189 AQQLMLAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNTWSQVLVFIGAKEN 248

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K L +      AL G  SQ ER  AL + + G+  V IATD+ ARGI +  L +V
Sbjct: 249 ADGLAKKLNKAGITTNALHGNKSQVEREEALTLFKSGKTNVLIATDLLARGIHIEQLPVV 308

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           I+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 309 INFELPMHAETYVHRVGRTARAGKQGVAMSLV 340


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 179/335 (53%), Gaps = 2/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT  F L +   L  ++    
Sbjct: 12  IVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPILQML--DDGTKV 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL +APTRELAVQV   ++       +      GGV    ++R L  G  I+V 
Sbjct: 70  RAKRIRALILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRLIEGVDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FSAT+S
Sbjct: 130 TPGRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK   ++ + +++A +      ID   V V    +   + ++++      A++F
Sbjct: 190 DQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSHLIQEQKWDQALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      +     SQ  RS  L+  ++G+ +  IAT VA+RGID+
Sbjct: 250 IETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASRGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             L  V++ +L   PE  +HR GRTGRAG  G ++
Sbjct: 310 EQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAI 344


>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 185/339 (54%), Gaps = 9/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L+  G+   T +Q   +   +  KDVL S++TGSGKT+AF L     +     R  P + 
Sbjct: 31  LTHLGFDRATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQRMY----RGKPFTR 86

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA QV  +L  L A T    A+ +GG + + + ++ +     VV TP
Sbjct: 87  RDQRVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPMFVVATP 146

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLMFSATI-S 190
           GR  DH+  +  ++  L+ ++LDEAD MLDLGF   +  I + ++ ++R+ LMFSAT+ +
Sbjct: 147 GRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRRQTLMFSATMDN 206

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             +  +A        R+++ + N +H+DI  R  L    D   A+++ +L        I+
Sbjct: 207 EDVIEMASEMLNAPKRLSVGNSNEEHTDITQRFYLCDHLDHKQALLDKVLETEDYNQVII 266

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TDVA+RG+D
Sbjct: 267 FTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVTTDVASRGLD 326

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++
Sbjct: 327 IDGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLV 365


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 186/360 (51%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 127 FPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 185

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 186 PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLTRGV 244

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 245 EVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMW 304

Query: 186 SATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++ +D ++V I S+  +  H       V+     RD  I ++ R   
Sbjct: 305 SATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIKHLERIME 364

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 365 DKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 424

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +      ++A  L +
Sbjct: 425 DVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAKQARDLVK 484


>gi|302552861|ref|ZP_07305203.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470479|gb|EFL33572.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 490

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/362 (33%), Positives = 187/362 (51%), Gaps = 7/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 77  GLPERLLTALGAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 136

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + +  PLAL + PTRELA QV   L        + +   +GG+S+ R+ + L +GA
Sbjct: 137 R---AESRQPLALVLVPTRELAQQVTDALTPFARALRLRLTTVVGGMSIGRQAKALHSGA 193

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD  +P  +RML 
Sbjct: 194 EVVVATPGRLKDLIDRGDCRLDRVAITVLDEADQMTDMGFMPQVTALLDQVAPGGQRML- 252

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V   D+      I    G 
Sbjct: 253 FSATLDRNVDRLVRAYLHDPVVHSVDPSAGAVTTMEHHLLHVEDDDKHATTTQIAARDG- 311

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG   V +AT+VA
Sbjct: 312 -RVIMFLDTKHAADRLAKKLLAVGVRASALHGGKSQSQRTRTLARFKDGEVTVLVATNVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL  +A 
Sbjct: 371 ARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRLMADAG 430

Query: 365 VS 366
           ++
Sbjct: 431 IT 432


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 32/358 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE----- 65
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L +   L AE     
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVLEKLAAEILVND 71

Query: 66  -NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            ND+      P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++
Sbjct: 72  GNDK------PILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQRKGVE 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +        + 
Sbjct: 126 QGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPVHQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT S A+  LA+    +   VN+A +    S +      V    +   +  ++  +
Sbjct: 186 MLFSATYSDAVKQLAQKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRN 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGR 294
             +  +VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  + G+
Sbjct: 245 NWRQVLVFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGK 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P +
Sbjct: 297 LRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSD 354


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/349 (35%), Positives = 186/349 (53%), Gaps = 12/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P    + L++ G+ + T VQ       L  +DV+  A+TGSGKT+AF L  A   +  
Sbjct: 54  SLPAYCVDELAKCGFPSPTPVQSQTWPAALSGRDVISIAETGSGKTLAF-LLPAVVHINA 112

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELAVQ+ +E    + K+  + + CI GG   + +   L+ G
Sbjct: 113 QPYLERGDGPIVLILAPTRELAVQI-QEQAATFGKSSKIKSACIYGGAPRNAQIAALREG 171

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + V TPGRL D +  K  N+  +   VLDEAD MLDLGF   I  +   +   R+ L+
Sbjct: 172 VELCVATPGRLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRPDRQTLL 231

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNIL-RYH 242
           F+AT    +   A ++  D V V I  E  + SD   + V V   D  +A +V  L R  
Sbjct: 232 FTATWPAEVAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGWLERAL 291

Query: 243 GAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           G  +A       IVF S++A V   T+ L    F  +++ G+ +Q+ER   L   R G++
Sbjct: 292 GEADAGGWTPRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEFRAGKS 351

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            V +ATDVAARG+D+ D+ LVI+ +  +  E+ +HR GRTGRAG KG +
Sbjct: 352 PVMLATDVAARGLDVKDVSLVINYDFPAKMEDYVHRIGRTGRAGAKGAA 400


>gi|124801418|ref|XP_001349688.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845295|gb|AAC71961.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|156072124|gb|ABU45413.1| DEAD-box helicase 2 [Plasmodium falciparum]
          Length = 562

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 183/346 (52%), Gaps = 8/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I E++ E G+   T +Q  IL     +KD++  ++TGSGKT  F + +   L   
Sbjct: 162 NICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQDLKVN 221

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L     + +    GGV +  +  +L    
Sbjct: 222 KQSF------YALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKP 275

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGR+ DH+   KG N+ +LK +V DEAD++L   F   I  +L   P  R   +
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFL 335

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  L K   K+ V+V ++++    S +    + + L  +   + ++  ++  
Sbjct: 336 FSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQT 395

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +N I+F +T A+  +          + + L G+L+Q +R ++L   +  +  + I+T V 
Sbjct: 396 RNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILISTQVG 455

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+DL D+++VI+ ++ S  E  +HR GRT RAGR G S+  + Q
Sbjct: 456 ARGLDLQDIKIVINFDICSCKE-YIHRVGRTARAGRSGKSITFVTQ 500


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 186/342 (54%), Gaps = 8/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+ KD+L  AQTG+GKT A+ L + S L   N      
Sbjct: 14  DALYDMHFDKCTPVQEKCIPLILKGKDILAVAQTGTGKTAAYLLPILSKLAKGN---YAD 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   + ++PTRELA Q+ + ++ + Y   G+      GG   +R   E + L  GA+IV
Sbjct: 71  DAINCVIMSPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEIKSLSMGANIV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   VLDEAD MLD+GF +DI+ I ++ PK  + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPKSCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I +LAK+  K+A  + +A  ++    I   A +   + +   I  I +    K  I
Sbjct: 191 MPNKIESLAKSLLKNAEIIKLAV-SKPAEKIQQSAYICYETQKIGIIKEIFKSGNLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V + T  L +   +   +  +L Q +R + +   +  +  V +ATD+ ARGI
Sbjct: 250 IFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + +
Sbjct: 310 DIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSE 351


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 187/370 (50%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + + G+   T +Q+      +  +D++  + TGSGKT+++ L     + A+ 
Sbjct: 129 FPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ- 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+ +E    + K+  +   C+ GGV    + RDL  G 
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECT-KFGKSSRIRNTCVYGGVPRGPQIRDLIRGV 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ +MF
Sbjct: 247 EICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMF 306

Query: 186 SATISPAITTLAKNYQKDAVRVNI------ASENRQH-----SDIDYRAVL-----VALS 229
           SAT    +  LA++Y  D ++V +      AS N +       + D RA L       L 
Sbjct: 307 SATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLK 366

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           DRDN +            ++F  T+      T+ L +  +  +A+ G+ +Q ER   L  
Sbjct: 367 DRDNKV------------LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNE 414

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G++ + +ATDVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +     
Sbjct: 415 FRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFT 474

Query: 350 QNMQRRAERL 359
            +  ++A  L
Sbjct: 475 SDNAKQAREL 484


>gi|146420455|ref|XP_001486183.1| hypothetical protein PGUG_01854 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 575

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/377 (32%), Positives = 191/377 (50%), Gaps = 38/377 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           IP  +   + + GY   T +Q A +   L  +DV+  A+TGSGKT+AF + L S L A  
Sbjct: 157 IPTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAID 216

Query: 65  ------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 E+ + S  +  L L +APTRELA+Q+ +E +   +  G  V   IGG       
Sbjct: 217 KDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETV 276

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
           + +Q+GAHIVV TPGRL D      +++S    + +DEAD M+D+GF   ++ IL   P 
Sbjct: 277 KSVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLTMDEADRMIDMGFEKALQSILSFLPS 336

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          K R  LMF+ATISP I  + K+Y +    + I        +I+ +
Sbjct: 337 TSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVDNINQK 396

Query: 223 AVLVA---------LSDRDNAIVNILRYHGAKNA----IVFCSTRASVSRFTKVLA-EHL 268
              +           + R N ++  LR H  +      I+F + + +    +  L+ +++
Sbjct: 397 FEYLGDNVDSQEELNAPRTNKMILALRQHIRETEQPLIIIFANFKRTCELLSVELSNQNV 456

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
              + + G  SQ+ R +A+   R+ +  V IATDVAARGID+P++ LV++  +    +  
Sbjct: 457 GSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEY 516

Query: 329 LHRSGRTGRAGRKGMSV 345
           +HR GRTGRAG+ G S+
Sbjct: 517 IHRIGRTGRAGKSGASL 533


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 189/358 (52%), Gaps = 32/358 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE----- 65
           I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L +   L AE     
Sbjct: 12  ILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPVLEKLAAEILVSD 71

Query: 66  -NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            ND+      P+  AL + PTRELA+QV   ++       +      GG +++ +R+ ++
Sbjct: 72  GNDK------PILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNPQRKGVE 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +        + 
Sbjct: 126 QGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLIAPVHQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT S A+  LA+    +   VN+A +    S +      V    +   +  ++  +
Sbjct: 186 MLFSATYSDAVKQLAQKMLNEPQWVNVA-DTTTASTVVQEVYRVDKRRKAELLSELVGRN 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGR 294
             +  +VF ST+ S        AEHL Q + L         G+ +Q  R+  L+  + G+
Sbjct: 245 NWRQVLVFASTKES--------AEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGK 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P +
Sbjct: 297 LRVLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSD 354


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA       
Sbjct: 209 YTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAAPAPAAGGNF 268

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 269 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 328

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRM 182
           ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I++    P+   R+ 
Sbjct: 329 LLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVNDRQT 388

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  R   V   D+ + +++IL  H
Sbjct: 389 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRIEYVEDHDKRSVLLDILHTH 448

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G     ++F  T+         L    F   A+ G+ +Q+ER  AL+M R+GR  + +AT
Sbjct: 449 GTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNGRCPILVAT 508

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 509 AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 552


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 183/350 (52%), Gaps = 14/350 (4%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+ + E + + G+   T +Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 71  FEDVYCFPKPLQELIVQAGFPGPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPAII 130

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+       + P  L +APTREL  Q+  +       +G+  A   GG     ++  
Sbjct: 131 HILAQ---LKQNADPQCLIMAPTRELTHQIYEQFTKFSVGSGLKAACLFGGQEKFIQKNQ 187

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+  +  +R
Sbjct: 188 LNQHPHILIACPGRLIDLVESGSTTLKGVTFLVLDEADRMLDMGFEPSIRKIVAQTRAER 247

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAI 235
           + ++FSAT    + +LA ++  +  + + I S     NRQ   I  + V+++   +++ +
Sbjct: 248 QTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQ---IQQKVVILSKEQKEDKL 304

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G +  I+FC T+    +    L +   +  +L G+  Q ER   +   + G  
Sbjct: 305 KEILKSLGTRKIIIFCQTKIKCDQLQLYLIQDGLRCKSLHGDKRQSERDFVMNSFKKGDT 364

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V +ATDVA+RG+D+ D+E VI+ ++    E+ +HR GRTGRAG +G+S+
Sbjct: 365 TVLVATDVASRGLDIKDIEFVINFDMPKMIEDYVHRIGRTGRAGAQGVSI 414


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Monodelphis domestica]
          Length = 1175

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 190/357 (53%), Gaps = 5/357 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 530 SLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIM-DQRALEEGE 588

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 589 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 648

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 649 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 708

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++   ++   ++ +L  Y  + + I+
Sbjct: 709 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGSVII 768

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 769 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 828

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 829 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 885


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 182/342 (53%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 96  SFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAY-LLPAIVHVNA 154

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               +P   P+ L +APTRELAVQ+ +E    +  +  + + CI GG     + RDLQ G
Sbjct: 155 QPYLAPGDGPIVLVLAPTRELAVQIQQE-SAKFGSSSKIKSTCIYGGAPKGPQIRDLQRG 213

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+      R+ L 
Sbjct: 214 VEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLY 273

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL-RYH 242
           +SAT    +  LA  +  D  +V I S + + +  I     +V   ++   ++ +L  + 
Sbjct: 274 WSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFM 333

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATD
Sbjct: 334 DGGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATD 393

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+  VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 394 VAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTA 435


>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           [Ciona intestinalis]
          Length = 452

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 16/347 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L   G+   T +Q   + P L+ KD    ++TGSGKT AF L +   L  +     
Sbjct: 16  IIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFALPVLQKLSED----- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA Q+  +   +     +  +V +GG+ + ++  +LQ   HIV+ 
Sbjct: 71  -PYGIFCLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQKKPHIVIA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL---GFRDDIEFILDSSPKKRRMLMFSA 187
           TPGRL D +R    N +++K +VLDEAD +LD     F +D+  I  S PK+R+ L+FSA
Sbjct: 130 TPGRLADLLRS---NENNVKFLVLDEADRLLDKLDGDFTNDLNLIFSSLPKERQTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHG 243
           T++  +  + +   K        ++     ++D R +L+    RD  +V I    L    
Sbjct: 187 TLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYICKDLLEKQP 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++ ++F  T  +      +L +  FQ V L   + Q+ER  AL   +    R+ +ATDV
Sbjct: 247 TRSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNTRLLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+P +++VI+  +    +N +HR GRT RAGR G+S+ ++ Q
Sbjct: 307 AARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQ 353


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 188/360 (52%), Gaps = 11/360 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +      + 
Sbjct: 357 ALKKHTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LEESE 415

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 416 GPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 475

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+DS    R+ +MFSAT  
Sbjct: 476 RMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRPDRQTVMFSATFP 535

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGAKN 246
            A+  LA+      + V +   +   SD++   +++   + DN  + +L     Y    +
Sbjct: 536 RAMEALARRILNKPIEVQVGGRSVVCSDVEQHVLVI---EEDNKFLKLLELLGHYQERGS 592

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L +  +  ++L G + Q +R + +   + G  R+ +AT VAAR
Sbjct: 593 VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVATSVAAR 652

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 653 GLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELS 712


>gi|262273619|ref|ZP_06051433.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
 gi|262222597|gb|EEY73908.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
          Length = 434

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 180/339 (53%), Gaps = 9/339 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E+G+ N T +Q   L   L  +D+   AQTG+GKT+AF  A    LL      +PA
Sbjct: 24  KGLEEKGFHNCTPIQALALPVLLTGQDIAGQAQTGTGKTMAFLTATFHHLLTTE---APA 80

Query: 73  ----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P A+ +APTRELA+Q+  +   L A T +   +  GG +  +++  L+NG  I+
Sbjct: 81  DRKKNCPRAIIMAPTRELAIQIYNDAAPLLASTSLTAGLAYGGEAYEKQKDTLENGVDIL 140

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFS 186
           +GT GR+ D  + + +++  ++AVVLDEAD M DLGF  DI F+      P +R  ++FS
Sbjct: 141 IGTCGRIIDFYKQRVIDLRCIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPSERLNMLFS 200

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++     + 
Sbjct: 201 ATLSYRVQELAFEHMTNPEHVVVEPEQKTGHRIKEELFYPSNKDKMRLLQTLIEEEWPER 260

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+         LA    +   L+G++ Q++R   L+    G   + +ATDVAAR
Sbjct: 261 AIVFANTKHRCEDIWGHLAADGLRAGLLTGDVPQKKRVKILEEFTKGSLDILVATDVAAR 320

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 GLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGASI 359


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 186/345 (53%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   P 
Sbjct: 78  EALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKL---SEGGHPE 134

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            +   + +APTRELA Q+ +++E + Y      VAV  G  GV   +++R L  GA +V+
Sbjct: 135 DSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVI 194

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 195 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSATM 254

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA++   D   V +A        +  +A  V   ++   I+ ++      +  I
Sbjct: 255 PAKIQQLAQSILNDPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIRSLFAEQTPERVI 312

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 313 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVNILVATDIVARGI 372

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 373 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQ 417


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 186/357 (52%), Gaps = 7/357 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P    + + +++ G+   T +Q   +   L  KD++  AQTG+GKT AF L +   
Sbjct: 33  FKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQTGTGKTAAFALPILHK 92

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L+ +       S  P  L + PTRELA+QV           GV     IGGVSV ++  +
Sbjct: 93  LVQDAQTEKQRSYHPKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMVN 152

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+     +VV TPGRL D +   G+N+S +  ++LDEAD MLD+GF  D + I+ + PK+
Sbjct: 153 LRRRSPQVVVATPGRLLDILEQGGINLSSIHTLILDEADRMLDMGFIPDTKRIVKAIPKE 212

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSATIS  +  L+K      V +++A +      I+     V   ++   + ++L
Sbjct: 213 RQSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPGDNKRALLFHLL 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+   S+ +  L     +   +    SQ  R +  +  R G+ RV +
Sbjct: 273 ENDEMNRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKLRVLV 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           ATD+A+RGID+  +  V++ +L    E  +HR GRTGRA + G+++ F  P   QRR
Sbjct: 333 ATDLASRGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPD--QRR 387


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 181/357 (50%), Gaps = 8/357 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRF 69
           I + L   G+   T +Q       +   D++  A+TGSGKT  F L +      ++    
Sbjct: 57  IQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSFHQYFQSKATAN 116

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P+ L +APTRELA Q+  E +      G+    C GG   + +   L+ G   V+
Sbjct: 117 KGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQIAALERGVECVI 176

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSA 187
            TPGRL D I  K  N+S++K VVLDEAD MLD+GF   I  I+ S P    R+ L+FSA
Sbjct: 177 ATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPDSTNRQTLLFSA 236

Query: 188 TISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T    I  LA ++  D +++N+   N    + DI  + ++ +  D+ + +  IL      
Sbjct: 237 TWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDDKIDRLKEILTDLKHS 296

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF   +         L +  F V +L G+  Q ER+  +   + G  R+ IATDVAA
Sbjct: 297 KVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAA 356

Query: 306 RGIDLPDLELVIHAELS---SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+ D+ +V++ ++    +  E+ +HR GRTGRAG KG++  +     ++ A +L
Sbjct: 357 RGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTMFTPGDKKLATQL 413


>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           acridum CQMa 102]
          Length = 712

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 187/371 (50%), Gaps = 29/371 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +PQ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 278 LPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLP 337

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +    P AL +APTREL  Q+  E +      G      +GG S+  +   L+NG
Sbjct: 338 PLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAFALRNG 397

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I+V TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 398 AEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 457

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +M++AT+ P +  +AK Y +      I +       +
Sbjct: 458 TDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGEAVDTV 517

Query: 220 DYRAVLVALSD-RDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   V+  D R   +  IL +   A   IVF + + +     + +    +  V L G 
Sbjct: 518 EQRVEFVSGEDRRKKRLQEILSKNEFAPPIIVFVNIKRNCDAVARDIKSMGWSTVTLHGS 577

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGR
Sbjct: 578 KTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGR 637

Query: 338 AGRKGMSVFVI 348
           AG+ G+++  +
Sbjct: 638 AGKSGVAITFL 648


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 191/371 (51%), Gaps = 16/371 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++   + + GY   T VQ+  +   L  +D++  AQTGSGKT AF + +  TLLA+
Sbjct: 308 NLRVLLNTNIKKSGYTKPTPVQKYGIPILLSGRDLMACAQTGSGKTAAFLIPIIHTLLAK 367

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +   S  S+     P AL I+PTREL +Q+  E       + +   +  GG S   + + 
Sbjct: 368 DRDLSDMSSANQVEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTSTSHQMKQ 427

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--- 176
           +  G  I+V TPGRL D + GKG +    ++ VVLDEAD MLD+GF  D+E +L      
Sbjct: 428 IFQGVDILVATPGRLLDLV-GKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVLRHDTMK 486

Query: 177 -PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ LMFSAT    I  LA  +  + V V +       +DI+     V  SD+   +
Sbjct: 487 PPGERQTLMFSATFPQEIQQLAAKFLNNYVFVTVGIVGSACTDIEQSFFEVKKSDKRTKL 546

Query: 236 VNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             +L     +N     +VF S + +      +L+E  F   ++ G+  Q+ER  AL   +
Sbjct: 547 KELLNEEIEQNMLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREEALYDFK 606

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G KG +  F  P+
Sbjct: 607 TGKMAILVATAVAARGLDIKNVRHVINYDLPKEIDEYIHRIGRTGRVGNKGKATSFFDPR 666

Query: 351 NMQRRAERLFR 361
             ++    L R
Sbjct: 667 YDEKLQGDLVR 677


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 187/369 (50%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + ++G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 134 FPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQ- 192

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +      P+ L +APTRELAVQ+  E    + K+  +   C+ GG     + RDL  G 
Sbjct: 193 PQLQYGDGPIVLVLAPTRELAVQIQTECS-KFGKSSRIRNTCVYGGAPKGPQIRDLARGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 252 EICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 311

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  L ++Y  D ++V I S      H+      V+   S RD  + ++     
Sbjct: 312 SATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALN 371

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+  + +AT
Sbjct: 372 EKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVAT 431

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++ F    N +   +  +
Sbjct: 432 DVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCK 491

Query: 359 LFREANVSV 367
           + REAN +V
Sbjct: 492 IMREANQTV 500


>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
          Length = 557

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +   L   + 
Sbjct: 13  PKLL-ESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSHS 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +         + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   L     I
Sbjct: 72  QIVGIRG---VILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGNPDI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  HI   GL++  +K +VLDEAD + ++G    IE IL+S PK R+ ++ SA
Sbjct: 129 VVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAK 245
           T+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR      +
Sbjct: 189 TMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSHE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  I TD+AA
Sbjct: 249 RAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G
Sbjct: 309 RGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHG 345


>gi|262173166|ref|ZP_06040843.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890524|gb|EEY36511.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 448

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 178/331 (53%), Gaps = 5/331 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  +         +  GG + + + + L      +V TPGR
Sbjct: 74  PRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A++  IL     +  I+F 
Sbjct: 194 VNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VI+ ++  + E  +HR GRTGRAG KG
Sbjct: 314 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKG 344


>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
 gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
          Length = 442

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   ++++L+      A+
Sbjct: 195 AIKDFAERILNEPVEIEADPARRERKKIQQWYYRAD--DIKHKTALLLHLLKQPEVTRAV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GEL Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 VFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 313 DIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLV 352


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 199/368 (54%), Gaps = 8/368 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +         P+A+ 
Sbjct: 324 YSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELEEGDGPIAVI 382

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV TPGR+ D +
Sbjct: 383 LAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVL 442

Query: 140 ---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
               GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSAT    +  L
Sbjct: 443 AANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEAL 502

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRA 255
           A+      V + +  ++   SDI   AV+ A   +   ++ +L  Y+   ++IVF   + 
Sbjct: 503 ARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQE 562

Query: 256 SVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                   L    +  VA L G + Q +R +++   + G  +V +AT VAARG+D+ +L 
Sbjct: 563 KADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLI 622

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           LV++ +  ++ E+ +HR GRTGRAGRKG +  FV+P++ ++ A  + R A  +   +P  
Sbjct: 623 LVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICR-AFETAGCKPPA 681

Query: 374 SVEAIRER 381
            ++A+ ER
Sbjct: 682 DLKAMFER 689


>gi|262164648|ref|ZP_06032386.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027028|gb|EEY45695.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 448

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 178/331 (53%), Gaps = 5/331 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 16  LAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  +         +  GG + + + + L      +V TPGR
Sbjct: 74  PRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPKFIVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 134 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A++  IL     +  I+F 
Sbjct: 194 VNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAEYRQVIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 254 ATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDVASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VI+ ++  + E  +HR GRTGRAG KG
Sbjct: 314 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKG 344


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 86  NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 145

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 146 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 205

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 206 QGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 265

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 266 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 325

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 326 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 385

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 386 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 445

Query: 357 ERLFR 361
           + L +
Sbjct: 446 QPLVK 450


>gi|219870628|ref|YP_002475003.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
 gi|219690832|gb|ACL32055.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
          Length = 406

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 180/334 (53%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  +D  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHHLL-NHDIPTKHN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+  +   L     + +A+  GG    ++ ++++ G  I++GT G
Sbjct: 81  QPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLQEIERGVDILIGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +++  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+S 
Sbjct: 141 RVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEERLTMLFSATLSH 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  V I    R    I       +  D+   ++ ++        IVF 
Sbjct: 201 RVRELAFEDMHNAEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLMEEEWPDRCIVFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L+    +V  L+G++ Q++R   L     G   + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 321 DVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 354


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 210/441 (47%), Gaps = 20/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 293 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 352

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG       R + 
Sbjct: 353 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIV 412

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 413 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 472

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT    I  LA ++ K + + V +        D+    + V    +   +V 
Sbjct: 473 QRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 532

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 533 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 592

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F    +    A
Sbjct: 593 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLA 652

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G        + A  D  K 
Sbjct: 653 QPL-----VKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRG------GAVFASVDTRKN 701

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG+ + +   PV
Sbjct: 702 YQGKHTLNTAGISSSQAPNPV 722


>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
 gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
          Length = 501

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 205/365 (56%), Gaps = 26/365 (7%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K FE++   P +I  +  +  + N +++Q   +   +  +D++ SA+TGSGKT +F + +
Sbjct: 5   KFFESLGLAPWLI-RSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL+E+          A+ + PTRELAVQ+  +   + A   V V+  IGG+   ++ 
Sbjct: 64  LN-LLSED-----PYGVFAVVLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQA 117

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--S 175
             L    HI+V TPGRL  H+  G  + +   K +VLDEAD +L   F  +I  IL+   
Sbjct: 118 LILDKRPHIIVATPGRLASHLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYLP 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDY---RAVLVALS 229
            P +R+ L+FSAT++  +  L      +++ +N   I  +N ++  +D      + +   
Sbjct: 178 PPTQRQTLLFSATMTNNLKKL------ESISLNSPFIFEDNSKYDTVDTLKQEYIYMPAQ 231

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +D  +V +L+ H  ++ IVF +   SV     +L +     V+L   L Q+ R +AL++
Sbjct: 232 AKDCYLVYLLKKHIGQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKV 291

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
            + G+ +V IATDVA+RG+D+PD+E+VI+ +LS++ ++ +HR GRT R G+ G ++ F+ 
Sbjct: 292 FKSGKVKVLIATDVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFIT 351

Query: 349 PQNMQ 353
           P ++Q
Sbjct: 352 PHDVQ 356


>gi|156838354|ref|XP_001642884.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113461|gb|EDO15026.1| hypothetical protein Kpol_1007p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 605

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/326 (34%), Positives = 183/326 (56%), Gaps = 22/326 (6%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDR---FSPASAPLALAIAPTRELAVQVGREL 94
           +D++  A TGSGKT+AF + +   LL    R         P AL +APTRELA Q+  E+
Sbjct: 227 RDLMGIASTGSGKTLAFVIPILIKLLGTAIRPLSLKVIEGPKALILAPTRELAQQIQAEI 286

Query: 95  EWLYAKTG----VVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHL 149
           + + + +      + ++CI GG S+     DL  G  I+V TPGRL D +    + I ++
Sbjct: 287 KKILSLSSNELTKITSICIVGGHSIEEISYDLSKGCDILVATPGRLIDCLESHLIVIDNV 346

Query: 150 KAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDA 204
             +VLDEAD+M+D GF D +  IL     +      + +MF+AT++P I  +A  Y ++A
Sbjct: 347 NTIVLDEADKMIDFGFEDQVTTILSKLQINEMKDNLQKIMFTATMTPTIERIANGYLRNA 406

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNAIVFCSTRASVSRF 260
             V+I +       I+    LV  S  +N+    +  +L  +     I+F + + +    
Sbjct: 407 SYVSIGNSEEFVPHINQ---LVYYSPNENSKFRKLKQVLELYPPP-VIIFINYKKTADWL 462

Query: 261 -TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            TK+  E  F+V  L G  SQ +R  +L ++R GR ++ IAT+VAARGID+P++ LV++ 
Sbjct: 463 ATKLQEETNFKVTTLHGSKSQDQREYSLNLLRTGRVQIMIATNVAARGIDIPNVGLVVNY 522

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++S + E+ +HR GRTGRAG++G ++
Sbjct: 523 QISDSFEDYIHRIGRTGRAGKEGTAI 548


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 179/336 (53%), Gaps = 8/336 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P 
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPPR 78

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL 
Sbjct: 79  ILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195
            +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI  
Sbjct: 139 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKD 198

Query: 196 LAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            A+   ++ V V+     R+   I    YRA    +  +   +VN+L+   A  AIVF  
Sbjct: 199 FAERLLEEPVEVSANPSTRERKKIHQWYYRAD--DIEHKTKLLVNLLQQPEATRAIVFVR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD
Sbjct: 257 KRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPD 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V + ++    +  LHR GRTGRAG+KG ++ ++
Sbjct: 317 VSHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLV 352


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/343 (35%), Positives = 187/343 (54%), Gaps = 20/343 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +    
Sbjct: 18  MFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPI---- 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N          AL ++PTRELA Q+  E++ L     + V++ IGG+S   +R+   
Sbjct: 74  LERNST--------ALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMSYDDQRQ--- 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K   
Sbjct: 123 --SKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAG 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSATI   I TLA+ + KD +R  +  E +   ++  + V V  +D ++ +  +L   
Sbjct: 181 F-FSATIPDEIMTLAEEFSKD-LREIVLDEYKPVEEVKQKFVKVR-NDWNDKVSKLLEEI 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 238 NGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++
Sbjct: 298 LASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAI 340


>gi|254386941|ref|ZP_05002224.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345769|gb|EDX26735.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 469

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 189/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 53  DMPGQLLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 112

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 113 --RAEPRQ-PLALVLVPTRELAQQVTDALTPYARAVKLRLATVVGGMSIGRQAGALRGGA 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 170 EVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 228

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 229 FSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHRATTEIAARDG- 287

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+  V + T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 288 -RVIMFLDTKHGVDQLTRDLLSSGVRAAALHGGKSQPQRTRTLAQFKSGHVSVLVATNVA 346

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL   A 
Sbjct: 347 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPAQRRDMTRLMAAAG 406

Query: 365 V 365
           +
Sbjct: 407 I 407


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 214 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 273

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 274 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIGGMSVKEQ 333

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 334 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 393

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 394 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 453

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  RDG+  V
Sbjct: 454 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDV 512

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 513 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 563


>gi|302559847|ref|ZP_07312189.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477465|gb|EFL40558.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 538

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   
Sbjct: 105 GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGG 164

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 165 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVVGLRMKVVCGGTSMGNQIYALERGV 221

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 222 DILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFMPEVTELLDQVPPGGQRMLF 281

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL   Y KD V   + +     + + +  ++V   D+      I    G  
Sbjct: 282 SATMENEIKTLVDRYLKDPVSHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAIASRKG-- 339

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 340 RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 399

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 400 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 459


>gi|302552921|ref|ZP_07305263.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470539|gb|EFL33632.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 505

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/353 (35%), Positives = 183/353 (51%), Gaps = 7/353 (1%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +Q A L   L  +DVL   +TGSGKT+AFGLA   TL     R +    PLAL + PTRE
Sbjct: 93  IQGATLPNSLAGRDVLGRGRTGSGKTLAFGLA---TLARTAGRRAEPRRPLALVLVPTRE 149

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV   L        + +A  +GG+S+ R+   L+ GA IVV TPGRL D I      
Sbjct: 150 LAQQVTDALTPYARSVRLRLATVVGGMSIGRQAGALRAGAEIVVATPGRLKDLIDRGDCR 209

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDA 204
           +  +   VLDEAD+M D+GF   +  +LD   P+ +RML FSAT+   +  L + Y  D 
Sbjct: 210 LDDIGITVLDEADQMADMGFMPQVTALLDQVRPEGQRML-FSATLDRNVDLLVRRYLNDP 268

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V  ++       + +++  + V  +D+      I    G    I+F  T+ +V R TK L
Sbjct: 269 VVHSVDPSAGAVTTMEHHVLHVHEADKYRTTTEIAARDG--RVIMFLDTKHAVDRLTKHL 326

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
                +   L G  SQ +R+  L   + G   V +AT+VAARGI + +L+LV++ +   +
Sbjct: 327 LNSGVRAAGLHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPGD 386

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
            ++ LHR GRT RAG  G  V ++  + +R   RL   A ++    P  S EA
Sbjct: 387 HKDYLHRGGRTARAGESGSVVTLVTPDQRRGMNRLMAAAGITPRTTPVRSGEA 439


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 203/395 (51%), Gaps = 32/395 (8%)

Query: 5   ENIPQVI--------GEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ENIP  I        G  L+E      +V  T VQ+  +   L  +D++  AQTGSGKT 
Sbjct: 146 ENIPPAITSFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTA 205

Query: 53  AFGLALASTLL------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
           AF   + + +L      + + R S  + PLAL ++PTREL+ Q+  E +    +TGV V 
Sbjct: 206 AFCFPIIAGILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVV 265

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG SV  + ++L+ G  I+V TPGRL D ++   +++S ++ + LDEAD MLD+GF 
Sbjct: 266 VIYGGTSVQSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFE 325

Query: 167 DDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++++    P +R+ ++FSAT    I  LA ++  + + + +         I  R
Sbjct: 326 PQIRKIVENTDMPPPGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR 385

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              V   D+ + +++++               +VF  T+         L +       + 
Sbjct: 386 VEYVHDVDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIH 445

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ +Q ER +AL+  R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRT
Sbjct: 446 GDRTQVEREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRT 505

Query: 336 GRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367
           GRAG+ G +         ++ R    L +EAN  V
Sbjct: 506 GRAGKSGFATAFFTDKDTSLARPLVDLMQEANQQV 540


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/331 (35%), Positives = 179/331 (54%), Gaps = 10/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q       ++ +D++  A+TGSGKT+  G  +   L  +  R      P  L
Sbjct: 183 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL--GYLIPGFLHLQRIRNDSRMGPTIL 240

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            ++PTRELA Q+ +E    + ++  +   C+ GG     + RDL+ GA IVV TPGRL D
Sbjct: 241 VLSPTRELATQI-QEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 299

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR+ LM++AT    +  +A
Sbjct: 300 ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIA 359

Query: 198 KNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCST 253
            +   +  +VNI +  E   +  I     +VA  ++   +  ILR    G+K  I+FCST
Sbjct: 360 ADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSK-VIIFCST 418

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    + T+ L    F   A+ G+ SQ ER N L   R GR  V +ATDVAARG+D+ D+
Sbjct: 419 KRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDI 477

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             V++ +  +  E+ +HR GRTGRAG  G +
Sbjct: 478 RAVVNYDFPNGVEDYVHRIGRTGRAGATGQA 508


>gi|213408863|ref|XP_002175202.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003249|gb|EEB08909.1| ATP-dependent RNA helicase dbp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 554

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/379 (34%), Positives = 191/379 (50%), Gaps = 19/379 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+++P         R +   T +Q A     L  +DV+  A+TGSGKTVAFG+     L 
Sbjct: 144 FDDLPLPDKLTAGLRNFKQPTPIQAASWPYLLAGRDVVGIAETGSGKTVAFGIPALRYLN 203

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  P+     L ++PTRELA+Q    +  L A  G+ V    GG     + R  + 
Sbjct: 204 QLPKEKHPSIR--VLVVSPTRELAIQTYENMRDLLAPLGLNVVAVYGGAPKFEQARAARE 261

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK----- 178
            A +++GTPGRL D I    +N S +  +VLDEAD MLD GF  DI  I+ ++P      
Sbjct: 262 -ASVIIGTPGRLLDLINDGAVNCSKVGYLVLDEADRMLDTGFEQDIRNIMSATPNPLAGG 320

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
           +R+ + FSAT   ++  LA  + KD V++ I S+     H+      V+     ++  + 
Sbjct: 321 QRQTVFFSATWPESVRELASTFLKDPVKITIGSDELAASHNITQIVEVIDDPRQKEYRLE 380

Query: 237 NILRYHG---AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +LR H     KN   +VF   +   +R    L    F VV + G+LSQ  R  AL   +
Sbjct: 381 ALLRKHLKEIGKNGKVLVFALYKKEAARVENTLRRK-FDVVGIHGDLSQAARIQALDSFK 439

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            GR  + +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRA  KG S+    PQ
Sbjct: 440 SGRCNLLVATDVAARGLDIPQVQLVINLTFPLTIEDYIHRIGRTGRANTKGTSITLFTPQ 499

Query: 351 NMQRRAE--RLFREANVSV 367
           +     E   + R+AN +V
Sbjct: 500 DKGHAGELINVLRQANQTV 518


>gi|15242323|ref|NP_196479.1| STRS2 (STRESS RESPONSE SUPPRESSOR 2); ATP-dependent helicase/ RNA
           binding [Arabidopsis thaliana]
 gi|108861886|sp|Q94C75|RH25_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 25
 gi|3776023|emb|CAA09212.1| RNA helicase [Arabidopsis thaliana]
 gi|9759356|dbj|BAB10011.1| RNA helicase [Arabidopsis thaliana]
 gi|23297113|gb|AAN13096.1| RNA helicase [Arabidopsis thaliana]
 gi|332003947|gb|AED91330.1| DEAD-box ATP-dependent RNA helicase 25 [Arabidopsis thaliana]
          Length = 563

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 182/353 (51%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67
           + + + G+  +T VQEA L   L+ KD+L  A+TG+GKTVAF L     ++     + ++
Sbjct: 93  KGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDN 152

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG-A 125
           R  P    + L + PTRELA Q   E   L      + V V IGG  +  E+R LQ    
Sbjct: 153 RHPPI---IVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPC 209

Query: 126 HIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR +IE I+ + PK+R+ 
Sbjct: 210 QILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQT 269

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT+S  +  +     ++D   VN   E     H  +    ++ +L    + +  +L
Sbjct: 270 FLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLL 329

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H   N     I+FC+T         +L +    V  +     Q  R+      R  ++
Sbjct: 330 KKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKS 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 390 IILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 442


>gi|258624240|ref|ZP_05719189.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583391|gb|EEW08191.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 452

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 178/331 (53%), Gaps = 5/331 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L +   FS A  
Sbjct: 20  LAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL-KTKAFS-AKD 77

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA QV  EL  +         +  GG + + + + L      +V TPGR
Sbjct: 78  PRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPKFIVATPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSATISPA- 192
           L DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR  LMFSAT+  A 
Sbjct: 138 LADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMFSATLDHAD 197

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +A     +  R+ I   + +H DI     L    D   A++  IL     +  I+F 
Sbjct: 198 VNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAEYRQVIIFT 257

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDVA+RG+D+P
Sbjct: 258 ATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDVASRGLDIP 317

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VI+ ++  + E  +HR GRTGRAG KG
Sbjct: 318 TVTHVINFDMPKHTEEYVHRIGRTGRAGNKG 348


>gi|255716336|ref|XP_002554449.1| KLTH0F05610p [Lachancea thermotolerans]
 gi|238935832|emb|CAR24012.1| KLTH0F05610p [Lachancea thermotolerans]
          Length = 396

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 169/314 (53%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+V+ +++Q+  + P     DVL  AQ+G+GKT  F +A          +  P   AP A
Sbjct: 41  GFVDPSAIQQRAILPITEGHDVLAQAQSGTGKTGTFSIAALQ-------KIDPKIKAPQA 93

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+Q+ + +  L     + V  CIGG S   +   L++GA IVVGTPGR+ D
Sbjct: 94  LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEALRDGAQIVVGTPGRVFD 153

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  +     H+K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  + 
Sbjct: 154 MIERRRFRTDHIKMFILDEADEMLSSGFKEQIYKIFTLLPPTTQVVLLSATMPQDVLEVT 213

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + ++ +R+ +  +      I    + V   D + + + ++        A++FC+TR  
Sbjct: 214 TKFMRNPIRILVKKDELTLEGIKQFFINVEEEDYKYDCLSDLYDSISVTQAVIFCNTRRK 273

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V A+  +L QQ+R   ++  R G +R+ I+TD+ ARGID+  + LV
Sbjct: 274 VEELTQRLVADNFTVSAIYSDLPQQQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLV 333

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 334 INYDLPTNKENYIH 347


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 186/347 (53%), Gaps = 18/347 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---------APLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S    +     P S          P  L +APTREL  
Sbjct: 224 RDLMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVS 283

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNIS 147
           Q+  E +    ++ V   V  GG  + ++ R++  G  ++V TPGRL D + RGK ++++
Sbjct: 284 QIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGK-VSLA 342

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++ +VLDEAD MLD+GF   I +I++     + K R+ LMFSAT    I  LA+++ KD
Sbjct: 343 NIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKD 402

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V +++        +I  + + V   ++ + I+++L  +     IVF  T+         
Sbjct: 403 YVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMADNLADY 462

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +  F   A+ G+ SQ ER  AL   ++G A + +AT VAARG+D+P++  VI+ +L S
Sbjct: 463 LYDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPS 522

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
           + ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 523 DIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEV 569


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 181/334 (54%), Gaps = 7/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   +  +D +  AQ+G+GKT  F + +   +  ++          AL
Sbjct: 45  GFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQ------AL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+   ++ L     +    CIGG +V  + + LQ G  IV GTPGR+ D 
Sbjct: 99  ILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDV 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K ++LDEADE+   GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 159 IKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTS 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D V++ +  +    S I    V     D + + + ++        A++FC+T+  V
Sbjct: 219 KFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKV 278

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     + +  F VVA+ G++ Q ER + +   R G +RV I+TDV ARGID+  + LVI
Sbjct: 279 NWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVI 338

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L ++ EN +HR GR+GR GRKG ++ +I ++
Sbjct: 339 NYDLPTDKENYIHRIGRSGRFGRKGTAINLITKD 372


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 180/342 (52%), Gaps = 6/342 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++A+         P+AL 
Sbjct: 296 YSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPMLVHIMAQ-PVLKEGDGPIALI 354

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
            APTREL  Q+  E +       + V  C GG S   + + LQ GA IVV TPGRL D I
Sbjct: 355 CAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKGLQQGAEIVVCTPGRLIDLI 414

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I ++    R+ L+FSAT+   +  L ++
Sbjct: 415 KAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQCLLFSATMKKKVEWLCRD 474

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRAS 256
              D +R+ +      + DI  +AV V  S +      + +I+ +    + ++F + +++
Sbjct: 475 ILSDPIRIVVGELGEANEDI-VQAVEVMKSPQQKWNWLLSHIVEFTSGGSVLIFVTKKSN 533

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E  +++  + G+  Q ER+N L+  +  +  + +ATDVAARG+D+P ++ V
Sbjct: 534 SEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLILVATDVAARGLDIPSIKTV 593

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           I+ +++ +     HR GRTGRAG KG++   + PQ+    A+
Sbjct: 594 INYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQDTHFAAD 635


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 184/342 (53%), Gaps = 8/342 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + + GY   + +Q+  L P L+ +DV+  AQ+G+GKT    +++   +   + +     
Sbjct: 36  GVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ--- 92

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++P+RELA Q  + ++ + A T +    CIGG S+  + + L+ G H V GTPG
Sbjct: 93  ---VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPG 149

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+   L    +K +VLDE+DEML  G +D I  +  + P   ++ + SAT+   I
Sbjct: 150 RVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEI 209

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             + + +  D VR+ +  +      I    V V   + + + + ++        AI+FC+
Sbjct: 210 LEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCN 269

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  V   T+ +    F V ++ G+  Q+ER + +   R  ++RV IA+DV ARGID+  
Sbjct: 270 TRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQT 329

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  VI+ ++ +NPE  +HR GR GR GR+G+++ FV   +M+
Sbjct: 330 VSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMK 371


>gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
          Length = 442

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   ++++L+      A+
Sbjct: 195 AIQDFAERILNEPVEIEADPARRERKKIQQWYYRAD--DIKHKTALLLHLLKQPEVTRAV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GEL Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 VFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 313 DIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLV 352


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 210/441 (47%), Gaps = 20/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 267 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 326

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG       R + 
Sbjct: 327 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIV 386

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 387 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 446

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT    I  LA ++ K + + V +        D+    + V    +   +V 
Sbjct: 447 QRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 506

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 507 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 566

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F    +    A
Sbjct: 567 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLA 626

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G        + A  D  K 
Sbjct: 627 QPL-----VKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRG------GAVFASVDTRKN 675

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG+ + +   PV
Sbjct: 676 YQGKHTLNTAGISSSQAPNPV 696


>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
          Length = 797

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 186/348 (53%), Gaps = 5/348 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 145 EILKKLAYEKPTPIQTQTIPAIMSGRDIIGIAKTGSGKTLAFLLPMFRHIL-DQPALEET 203

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+A+ ++PTREL +Q+G+E +       + V    GG  +  +  +L+ GA I+V TP
Sbjct: 204 DGPIAIIMSPTRELCLQIGKECKRFTKSLNLRVVTVYGGTGISEQIAELKRGAEIIVCTP 263

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  +VLDEAD M D+GF   +  I+D++   R+ +MFSAT 
Sbjct: 264 GRMIDMLAANNGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNTRPDRQTVMFSATF 323

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+      V + +   +   +D++   +++    +   ++ +L  Y    + +
Sbjct: 324 PRQMEALARRILNKPVEITVGGRSVVCADVEQHVLVMEDEQKFLKLLELLGVYQEQGSVL 383

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + S     K L +  +  ++L G + Q +R +A+   ++G+ ++ IAT VAARG+
Sbjct: 384 VFVEKQESADDLLKDLMKAGYDCISLHGGIDQYDRDSAVVDFKNGKIKLMIATSVAARGL 443

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  + QR A
Sbjct: 444 DVKHLILVVNYDCPNHHEDYIHRCGRTGRAGNKGFAYTFITPDQQRAA 491


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 182/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 234 KLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 293

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGGVS+  +
Sbjct: 294 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQ 353

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G HI+V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 354 METMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 413

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 414 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 473

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 474 CLQ-KTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 532

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 533 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 583


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 182/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 186 KLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 245

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGGVS+  +
Sbjct: 246 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQ 305

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G HI+V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 306 METMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 365

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 366 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 425

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 426 CLQ-KTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 484

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 485 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 535


>gi|157876896|ref|XP_001686790.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129865|emb|CAJ09171.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 573

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 192/359 (53%), Gaps = 8/359 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
           +PQ +   L  +G+   T +Q    +  L  +D++  A+TGSGKT+AF + ALA   L E
Sbjct: 113 VPQYLKAKLLAQGFTAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             +      P+ + +APTRELA Q+  E E +      +   CI GG     +   L+ G
Sbjct: 173 PLKV--GDGPMVIVLAPTRELAQQI--EQEAIKVLPQSIRCGCIYGGAPKGPQLGLLRQG 228

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K +N+  +  +V+DEAD MLD+GF   +  I       R+ LM
Sbjct: 229 VHILVATPGRLIDFMEIKRVNLLRVTYLVMDEADRMLDMGFEPQVRAICGQIRPDRQTLM 288

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA ++QK+ VR+N+ S E   + D+    +L + + + + +  ++  H 
Sbjct: 289 FSATWPREIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLIERHR 348

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++FC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDV
Sbjct: 349 NQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDV 408

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFR 361
           AARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  Q  A  +F+
Sbjct: 409 AARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQ 467


>gi|291000796|ref|XP_002682965.1| predicted protein [Naegleria gruberi]
 gi|284096593|gb|EFC50221.1| predicted protein [Naegleria gruberi]
          Length = 346

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 160/283 (56%), Gaps = 6/283 (2%)

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ND  + + +  A+ ++PTRELA Q  R + +L       V  C+GG  V  + + L++G 
Sbjct: 34  NDLIAQSQSGTAIVLSPTRELAQQTQRVMSYLGDYLHAQVHACVGGNKVGEDIKKLESGV 93

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V GTPGR+ D +R + LN  H+K +VLDEADEML  GF++ I + +       ++++ 
Sbjct: 94  HVVSGTPGRVYDMMRQQHLNTKHIKLLVLDEADEMLSQGFKEQI-YQIYRLLNNTQIVLI 152

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYH 242
           SAT+   +  + + +  D +R+ +  +      I  +   +A+   D     + ++    
Sbjct: 153 SATLPAEVLEITQQFMTDPIRILVKRDEVTLEGI--KQFFIAVEKEDWKFETLCDLYDSL 210

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC+ R  V    K + +H F V  + G++ Q+ER   ++  R G++RV I TD
Sbjct: 211 TVTQAVIFCNKRDKVEWLAKQMKKHNFTVSFMHGQMPQKEREAIMEEFRKGQSRVLITTD 270

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++
Sbjct: 271 VWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRYGRKGVAI 313


>gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
 gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
          Length = 422

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTTQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 175/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+    + S  
Sbjct: 17  DALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +     A T + +A   GGV+             +VV T 
Sbjct: 75  GPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGN 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    L  +   + + L+      +I
Sbjct: 195 AIKDFAERLLNEPVEIESDPSRRERKKILQWYYRAD--DLKHKTTLLCHQLKQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATD+AARGI
Sbjct: 253 IFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG ++  +
Sbjct: 313 DIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFV 352


>gi|66475994|ref|XP_627813.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
           [Cryptosporidium parvum Iowa II]
 gi|46229325|gb|EAK90174.1| nucleolar protein GU2. eIF4A-1-family. RNA SFII helicase
           [Cryptosporidium parvum Iowa II]
          Length = 738

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 209/432 (48%), Gaps = 36/432 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L  RG   L  +Q         +KDVL  A+TG+GKT+AF L +   LL +  +F P 
Sbjct: 77  EILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIERLLKKG-KFDPN 135

Query: 73  SA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA QV  E E +  K    V    GG   + + ++++ G  IVV
Sbjct: 136 KHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQIQEIKKGVDIVV 195

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------------SSP 177
           G PGR+ D I    LN+S +  + LDEAD+ML++GF++ ++ I+D            S  
Sbjct: 196 GCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVRKETGDGETHSRQ 255

Query: 178 KKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIA---------SENRQHSDIDYRAVLVA 227
            K ++L+FSAT+ P +   L +    D V V++           E    S I + A+  A
Sbjct: 256 NKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCA 315

Query: 228 LSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              R   + +I+  +   N   I+F  T+ + +    + +E       L G++ Q +R  
Sbjct: 316 YPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIA-MRSEISKMCQVLHGDIQQNQREI 374

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ALQ  ++GR R  +ATDVAARG+ + D+ +VI      + +  +HRSGRTGRAG+ G ++
Sbjct: 375 ALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAI 434

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-------FLDSIQG 398
                +       + + + +S      P  E I ++ A  I +D L        LD ++ 
Sbjct: 435 MFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSIGKDLLEKDIPSAMLDCVRD 494

Query: 399 DEKKMVDVLLAK 410
             K ++  L  K
Sbjct: 495 PAKHIIQGLWRK 506


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 190/365 (52%), Gaps = 9/365 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L +   L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVLDKL---SEGRHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            +   + +APTRELA Q+ +++E   +    + V V     G+   ++++ L  GA +V+
Sbjct: 71  DSINCIIMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA N   +   V +A    + +D   +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANNILNNPAEVKLAVS--KPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   + +      ++ 
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKNIENFLEKTIY 368

Query: 369 WEPAP 373
             P P
Sbjct: 369 KIPVP 373


>gi|308160101|gb|EFO62607.1| DEAD box RNA helicase Vasa [Giardia lamblia P15]
          Length = 663

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 187/357 (52%), Gaps = 28/357 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------AENDRF-- 69
           Y   T +QE  +   L   D+L ++QTGSGKT +F   + + L+        +E+D+   
Sbjct: 201 YTQPTPIQENAIPLVLSSMDLLATSQTGSGKTFSFLSPIIAQLITSRAKDAISEDDKNME 260

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              S PLA+ ++PTREL  Q+      L  KT ++V +  GG     +R  L+ G  IV+
Sbjct: 261 QSMSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGAREQRGLLKKGCDIVI 320

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------DSSPKKRRM 182
            TPGRL D +  K L++ +++ +VLDEAD+MLD+GF   I  ++       + S   R+ 
Sbjct: 321 ATPGRLKDFLERKCLSLKYVRVMVLDEADKMLDMGFEPQIRDLVYKFDMPGNGSNGNRQT 380

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRAVLVALSDRDNAIV 236
           LMFSAT    +  +AK Y  +  R+++       +  +Q  +      + ++  R + ++
Sbjct: 381 LMFSATFGTGVQAMAKRYLHNEARIHVGQIGSTTTTIKQQFEYFAETAIKSVDKRIDKLI 440

Query: 237 NILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +IL+  G+        ++F  T+  +      L     +V  + G+L Q+ER N L+  +
Sbjct: 441 HILKSPGSIPTASFLTLIFVETKKDIGYIVTKLLNGGLKVCEMHGDLEQRERQNNLKSFK 500

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DG+  V +ATDVA RGID+  +  VI+ +   + +  +HR GRTGRAG +G++   I
Sbjct: 501 DGKTPVLVATDVAQRGIDIGAIRHVINFDFPKDIDTYIHRIGRTGRAGAEGLATSFI 557


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 262 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 321

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 322 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 381

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 382 QGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 441

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 442 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 501

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 502 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 561

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 562 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 621

Query: 357 ERLFR 361
           + L +
Sbjct: 622 QPLVK 626


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 182/342 (53%), Gaps = 5/342 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 91  SFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAY-LLPAIVHVNA 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               +P   P+ L +APTRELAVQ+ +E    +  +  + + CI GG     + RDLQ G
Sbjct: 150 QPYLAPGDGPIVLVLAPTRELAVQIQQESA-KFGSSSKIKSTCIYGGAPKGPQIRDLQRG 208

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+      R+ L 
Sbjct: 209 VEIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLY 268

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL-RYH 242
           +SAT    +  LA  +  D  +V I S + + +  I     +V   ++   ++ +L  + 
Sbjct: 269 WSATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFM 328

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATD
Sbjct: 329 DGGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATD 388

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+  VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 389 VAARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTA 430


>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|74656119|sp|Q59PR3|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
          Length = 440

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 186/352 (52%), Gaps = 20/352 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L        T++Q A +   L+  D +  A+TGSGKT+AF   + +      D F 
Sbjct: 12  LSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQW--SEDPF- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+  +   L A   + VAV +GG    ++   LQ   H V+ 
Sbjct: 69  ---GIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIA 125

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           TPGRL DHI   G      +  +K +VLDEAD +L   F  D++   D  P   KR+ L+
Sbjct: 126 TPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVLPTSDKRQTLL 185

Query: 185 FSATISPAITTLAKNYQ---KDAV---RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           F+ATI+ A+  L +      K  V    V    +    S +    V V    ++  + +I
Sbjct: 186 FTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPSYVKEAYLNSI 245

Query: 239 LRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           L     K+  A++F +   +     ++L +  F+V +L  E+ Q ER+N+L   + G AR
Sbjct: 246 LHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNSLHRFKAGAAR 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + IATDVA+RG+D+P +ELVI+ ++ ++P++ +HR GRT RAGRKG +V +I
Sbjct: 306 ILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSII 357


>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274 [Cryptosporidium hominis]
          Length = 868

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 184/343 (53%), Gaps = 6/343 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +   L   + 
Sbjct: 13  PKLL-ESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSH- 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S       + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   L     I
Sbjct: 71  --SQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGNPDI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  HI   GL++  +K ++LDEAD + ++G    IE IL+S PK R+ ++ SA
Sbjct: 129 VVATPGRLFHHIIEAGLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNRQCVLVSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAK 245
           T+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR      +
Sbjct: 189 TMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSHE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  + TD+AA
Sbjct: 249 RAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRALVVTDIAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G +  +I
Sbjct: 309 RGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLI 351


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 195/365 (53%), Gaps = 5/365 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++IF   N P    + +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 67  IRIFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 125

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +A   R      P+ L +APTRELAVQ+  E     +K  +      GG     + 
Sbjct: 126 AFVHVAAQPRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIYGGAPKGPQI 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +  + +N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 186 RDLQRGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
            R+ L +SAT    +  LA+++  +  +V I S++ + +    + V V +  ++   ++ 
Sbjct: 246 DRQTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRLIK 305

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+        ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + GR+ 
Sbjct: 306 LLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSP 365

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ V++ +  S+ E+ +HR GRTGRAG +G ++    ++  + A
Sbjct: 366 IMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFTESNAKFA 425

Query: 357 ERLFR 361
             L +
Sbjct: 426 RDLIK 430


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 185/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 261 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 320

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 321 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 380

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 381 QGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 440

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    + V    +   +V 
Sbjct: 441 QRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 500

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 501 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 560

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G +V F  P++    A
Sbjct: 561 LVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPESDSHLA 620

Query: 357 ERLFR 361
           + L +
Sbjct: 621 QPLVK 625


>gi|332372808|gb|AEE61546.1| unknown [Dendroctonus ponderosae]
          Length = 423

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 193/354 (54%), Gaps = 7/354 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    +L + D  +      AL
Sbjct: 69  GFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSIS----ILQQID--TTVRECQAL 122

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L  G H+VVGTPGR+ D 
Sbjct: 123 ILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLDTGVHVVVGTPGRVFDM 182

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   H+K  VLDEADEML  GF+D I  +  +     ++++ SAT+ P +  + K
Sbjct: 183 INRRALRPQHIKMFVLDEADEMLSRGFKDQIHDVFKTLNADVQVILLSATMPPDVLDVTK 242

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ +  +R+ +  E      I    V V   D +   + ++        A++FC+TR  V
Sbjct: 243 SFMRAPIRILVKKEELTLEGIKQFFVYVEKEDWKLETLCDLYDTLSITQAVIFCNTRRKV 302

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 303 DWLTESMHKKDFTVSAMHGDMEQKERDVIMRQFRTGSSRVLITTDLLARGIDVQQVSLVI 362

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +L +N EN +HR GR GR GRKG+++  + ++ +R    + +  N ++   P
Sbjct: 363 NYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEDDKRNLNDIEKFYNTNIAEMP 416


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 179/339 (52%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71
           L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +  +   + R   
Sbjct: 23  LTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++ +     G +  VC+ GGVSV+ + + L+ G  I+V
Sbjct: 83  GNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQSLRGGTDILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL      D + V + S N   S +  R   V    +   + ++++ H  + A++
Sbjct: 203 PEQVQTLTHELLTDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQHEWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + S       L +         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 261 FVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 359


>gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 458

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 8/336 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
            A++ +GY   T +Q   +   L + D+L  AQTG+GKT AF L L   L A+    +  
Sbjct: 14  HAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQRLAAKQS--TKV 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTRELA QV   +E    +  +      GGV +  +   LQ G  +++ TP
Sbjct: 72  QGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQLQEGVDVLIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + L+  +L+ +V DEAD MLDLGF DD++ I    P KR+ L+FSAT S  
Sbjct: 132 GRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKRQTLLFSATFSKQ 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHGAKNAIV 249
           I   A+        + +++ N   S +D  A     +  + +  A++ +++ H     +V
Sbjct: 192 IKHFAREMLNAPKTIEVSAVN---STVDLVAQTFHPIEQARKSAALIQLIQQHRWSQTLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L +      ++    +Q  R+ AL   + G  +V +ATD+AARGID
Sbjct: 249 FIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVATDIAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  L  V++ +L   PE+ +HR GRTGRAG  G ++
Sbjct: 309 VSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAI 344


>gi|149277253|ref|ZP_01883395.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
 gi|149232130|gb|EDM37507.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Pedobacter
           sp. BAL39]
          Length = 412

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 178/322 (55%), Gaps = 9/322 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+ N T +Q+  +   L +KD++  AQTG+GKT A+ L + + +     R +  
Sbjct: 14  EGLLAMGFRNATPIQQEAIPLILSKKDLIACAQTGTGKTGAYLLPIMNMITGTEIRHNNT 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVV 129
                L +APTRELA Q+  ++E L   T +      GG   ++  +++R +++G  I++
Sbjct: 74  -----LILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQKRSMRDGVDIII 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    L +  L+ +VLDEAD MLD+GF DDI  I+   PK+R+ ++FSAT+
Sbjct: 129 ATPGRLISHLSSGALKLDQLQHLVLDEADRMLDMGFYDDIMRIVSFLPKERQTVLFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA     +  +++IA  ++  + I+ +A +V  S +   +  +++     + ++
Sbjct: 189 PPKIRKLASTLLSNPEQISIAI-SKPAAGINQQAYIVHDSQKVKLLTELMKNVDFPSILI 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+  V    KV     F+  A   +L Q+ER   L   ++ R  V I TDV +RGID
Sbjct: 248 FASTKEKVKNLGKVFRGLGFKAEAFHSDLGQKEREAILLEFKNKRVPVLIGTDVLSRGID 307

Query: 310 LPDLELVIHAELSSNPENLLHR 331
           +  + LVI+ ++  +PE+ +HR
Sbjct: 308 VEGISLVINYDVPHDPEDYIHR 329


>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
          Length = 442

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   ++++L+      A+
Sbjct: 195 AIKDFAERILNEPVEIEADPARRERKKIQQWYYRAD--DIKHKTALLLHLLKQPEVTRAV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GEL Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 VFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 313 DIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLV 352


>gi|160948185|emb|CAL91031.1| DEAD box helicase [Macrostomum lignano]
          Length = 929

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 7   IPQV-IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P V +   L +  Y  LT VQ+  +   L+ +D++  AQTGSGKT AF L LA  ++AE
Sbjct: 489 LPSVMLDNILRKYNYNKLTPVQKYGIPIILKGRDLMACAQTGSGKTAAFLLPLAK-MIAE 547

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            D      A     P+AL + PTREL  Q+        A T +      GG      R +
Sbjct: 548 LDTNDSTVAQYTTYPVALILTPTRELCNQIYDFARGFRAGTNIHAKRVYGGPKTEYLRAE 607

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L NG HI+V TPGRL D      ++++  + +VLDEAD+MLD GF D + + LD  P  R
Sbjct: 608 LANGCHILVATPGRLKDFAERNIVSLNKTRLLVLDEADQMLDRGFMDSVTWTLDQMPSDR 667

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +++MFSAT    I  LA+ Y ++ + + +      + D+      V   D+  A++ IL+
Sbjct: 668 QIVMFSATFPNQIQALAQQYLQNYLYLTVGQVGAANPDVTQEVREVQQDDKQAALIEILK 727

Query: 241 Y------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +            ++F  ++        +L++  F    + G+  Q+ER  +L+    GR
Sbjct: 728 HCRSDPSQADDRILIFVESKRRADYVGLMLSDGGFPCTTIHGDRLQREREISLRSFLRGR 787

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + +AT+V+ARG+D+  +ELVI+ +L ++ +   HR GRTGR G  G S+
Sbjct: 788 LPIMVATNVSARGVDINGIELVINMDLPNDFDMYAHRIGRTGRCGNPGKSI 838


>gi|32399063|emb|CAD98303.1| DEAD/DEAH box helicase, possible [Cryptosporidium parvum]
 gi|323508801|dbj|BAJ77294.1| cgd6_4860 [Cryptosporidium parvum]
          Length = 688

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 209/432 (48%), Gaps = 36/432 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L  RG   L  +Q         +KDVL  A+TG+GKT+AF L +   LL +  +F P 
Sbjct: 27  EILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIERLLKKG-KFDPN 85

Query: 73  SA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA QV  E E +  K    V    GG   + + ++++ G  IVV
Sbjct: 86  KHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQIQEIKKGVDIVV 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------------SSP 177
           G PGR+ D I    LN+S +  + LDEAD+ML++GF++ ++ I+D            S  
Sbjct: 146 GCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVRKETGDGETHSRQ 205

Query: 178 KKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIA---------SENRQHSDIDYRAVLVA 227
            K ++L+FSAT+ P +   L +    D V V++           E    S I + A+  A
Sbjct: 206 NKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCA 265

Query: 228 LSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              R   + +I+  +   N   I+F  T+ + +    + +E       L G++ Q +R  
Sbjct: 266 YPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIA-MRSEISKMCQVLHGDIQQNQREI 324

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ALQ  ++GR R  +ATDVAARG+ + D+ +VI      + +  +HRSGRTGRAG+ G ++
Sbjct: 325 ALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAI 384

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-------FLDSIQG 398
                +       + + + +S      P  E I ++ A  I +D L        LD ++ 
Sbjct: 385 MFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSIGKDLLEKDIPSAMLDCVRD 444

Query: 399 DEKKMVDVLLAK 410
             K ++  L  K
Sbjct: 445 PAKHIIQGLWRK 456


>gi|157960731|ref|YP_001500765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845731|gb|ABV86230.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 429

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/330 (34%), Positives = 182/330 (55%), Gaps = 10/330 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KD+L  AQTGSGKT AFGL L  + +  N   S +    AL + PT
Sbjct: 33  TDIQRLAIPQILAGKDLLALAQTGSGKTYAFGLPLLQSNINGN---SDSGEVKALVLVPT 89

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-----AHIVVGTPGRLCDH 138
           RELA+QVG  LE +   TG++V +C GGV    + + LQ         +VV TPGRL D 
Sbjct: 90  RELALQVGEALESVSDSTGIIV-LC-GGVDKEEQVKTLQQARLQLKPQLVVATPGRLLDL 147

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L++  +K +VLDEAD ++++GF  D+E IL+  P KR+ ++FSAT++P +   A 
Sbjct: 148 LREQQLSLESVKQLVLDEADRLMEMGFWPDLERILEFIPSKRQTMLFSATLAPELNEKAL 207

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              +  V+V   + N   +DI     LV   D+  A++ +++ +     +VF + +    
Sbjct: 208 GLLRAPVKVEAHAANSVVTDISESLYLVNKGDKARALIALIQKNQWSQVLVFINAKDDAD 267

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +  K L +      AL G+  Q +R   L   +  +  V + TD+ +RGI +  L +VI+
Sbjct: 268 KLAKRLVKAGINAAALHGDKEQLDRQQTLADFKALKLPVLVTTDLLSRGIHVDALPVVIN 327

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L ++    +HR GRT RAG KG+++ ++
Sbjct: 328 LDLPNSAPVYVHRIGRTARAGDKGLAISLV 357


>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 808

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 194/374 (51%), Gaps = 32/374 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + + + GY + T +Q A +   L+ +D++  A TGSGKT +F L L   +  L 
Sbjct: 375 LPRRLLDLIKQVGYADPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELP 434

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +         V   +GG S+  +   L+
Sbjct: 435 RLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEEQAYSLR 494

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           +GA I++ TPGRL D +  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 495 DGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 554

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +M++AT+  A+  +A+ Y +    V I +  +  
Sbjct: 555 PDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGQAV 614

Query: 217 SDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++ R   VA  D R   + +IL     +  I VF + + +     K + +  F  V L
Sbjct: 615 DTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQMGFSSVTL 674

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GR
Sbjct: 675 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR 734

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG+ G+++  +
Sbjct: 735 TGRAGKSGVAITFL 748


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 191/362 (52%), Gaps = 28/362 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR- 68
           ++ E + + GY   T VQ+  +   +  +DV+  AQTGSGKT AF L +  +LL EN R 
Sbjct: 280 ILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPILHSLL-ENQRD 338

Query: 69  ---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +  P A+ I+PTREL  Q+  + +     + + V V  GG S+  +   + NG 
Sbjct: 339 LVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSISHQTNKVFNGC 398

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKR 180
           H++V TPGRL D I RGK + +S L+  VLDEAD MLD+GF  DIE ILD     + ++R
Sbjct: 399 HVLVATPGRLLDFIGRGKVV-LSSLRFFVLDEADRMLDMGFLPDIEKILDHETMVAAEER 457

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-----------DYRAVLVALS 229
           +MLMFSAT    I  LA  + ++ + + +       +D+           D R +L  L 
Sbjct: 458 QMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPDKRKLLKELI 517

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++ N + +I      +  +VF + +         L+E+ +   ++ G+  Q+ER  AL  
Sbjct: 518 EKQNQLGSI------EGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEALSD 571

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +     
Sbjct: 572 FKKGKMSILVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATSFFD 631

Query: 350 QN 351
            N
Sbjct: 632 PN 633


>gi|289617636|emb|CBI61359.1| unnamed protein product [Sordaria macrospora]
          Length = 317

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 160/279 (57%), Gaps = 2/279 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA Q+   +  L     V    CIGG +V  + R L  G HIV GTPGR+ 
Sbjct: 14  ALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVA 73

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +
Sbjct: 74  DMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDM 133

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
              +  D VR+ +  +      +    + V   D + + + ++        A++FC+TR 
Sbjct: 134 TTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRR 193

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I+TDV ARGID+  + L
Sbjct: 194 KVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSL 253

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           VI+ +L SN EN +HR GR+GR GRKG+++ FV  ++++
Sbjct: 254 VINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVR 292


>gi|152972774|ref|YP_001337920.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262040904|ref|ZP_06014130.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012120|ref|ZP_08307282.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
 gi|189040033|sp|A6TGG9|RHLB_KLEP7 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150957623|gb|ABR79653.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041793|gb|EEW42838.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533935|gb|EGF60594.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PAVI-EALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 197/380 (51%), Gaps = 26/380 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS+  Y   T VQ+  +   L  +D++  AQTGSGKT AF + + + +  +     P  
Sbjct: 315 ALSK--YTKPTPVQKYSIPIVLGRRDLMACAQTGSGKTAAFLVPILNQIYDKGPGQVPQQ 372

Query: 74  A----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P+AL +APTRELA Q+  E      ++ V   V  GG  +  + RDL  
Sbjct: 373 QRQYGKRTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQMRDLDR 432

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKK 179
           G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I++ +      +
Sbjct: 433 GCHMLVATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIRLIVEKNGMPVSGE 492

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT    I  LA+++ ++ V + +        +I  + V V  +++ + +++++
Sbjct: 493 RQTLMFSATFPKEIQILARDFLENYVFLAVGRVGSTSENITQKVVWVEENEKRSFLLDLI 552

Query: 240 RYHGAKNA------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
              G  ++      + F  T+       + L +  +   ++ G+ SQ+ER +AL++ R G
Sbjct: 553 NASGMFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQREREDALKVFRSG 612

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
              + +AT VAARG+D+P++  VI+ +L S+ E  +HR GRTGR G  G++     +   
Sbjct: 613 DRPILVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNK 672

Query: 351 NMQRRAERLFREANVSV-VW 369
           N+ R    L  EAN  V  W
Sbjct: 673 NIIRDLLDLLVEANQEVPTW 692


>gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR]
 gi|61214743|sp|Q5QYF8|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 425

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 177/337 (52%), Gaps = 2/337 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+S  G+   T +Q   L   L  +DV   AQTG+GKT+AF LA  + L+       
Sbjct: 20  IQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNESSEK 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S P AL +APTRELA+Q+  + + L    G+ + V  GG     ++  L     I+VG
Sbjct: 80  TESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGGEGYEGQKEQLAAQPDILVG 139

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSAT 188
           T GRL D  +    ++  ++ VVLDEAD M DLGF DDI ++L     P KR  L+FSAT
Sbjct: 140 TTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSKRLNLLFSAT 199

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LA  +     ++ +    +  + +       +  ++   ++ ++       AI
Sbjct: 200 LSYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLLTLIEEDWPDKAI 259

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+    +    L  +  +   L+G++ Q++R   L+   +G+    +ATDVAARG+
Sbjct: 260 VFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKLDFLVATDVAARGL 319

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +P++  V + +L  + E+ +HR GRTGRAG  G ++
Sbjct: 320 HIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAI 356


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 183/348 (52%), Gaps = 26/348 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +  +     PA+      
Sbjct: 220 YDTPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPILNQIYEK----GPAAYNVGPK 275

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  PL L +APTRELA Q+  E +    ++ V   V  GG  V  + RDL+ G H+
Sbjct: 276 LQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSHVMDQIRDLEQGCHL 335

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRML 183
           +V TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++      P  R+ L
Sbjct: 336 LVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIVEKDSMPPPGDRQTL 395

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---- 239
           MFSAT    I  LA+++  + + + I        +I  + V V   ++ + ++++L    
Sbjct: 396 MFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLLNATP 455

Query: 240 -RYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            R   A++ I VF  T+       + L  + + V ++ G+ +Q+ER +AL+  R G   V
Sbjct: 456 IRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQREREDALKSFRSGNTPV 515

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+P +  VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 516 LVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLGLAT 563


>gi|169629244|ref|YP_001702893.1| ATP-dependent RNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169241211|emb|CAM62239.1| Probable ATP-dependent RNA helicase [Mycobacterium abscessus]
          Length = 438

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 182/359 (50%), Gaps = 4/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G      +Q A L   L  +DVL   +TGSGKT+ F + + + + A+ 
Sbjct: 1   MPAPLVNVLTRGGIDAPFPIQAATLPDTLGGRDVLARGKTGSGKTLGFSIPVVARI-ADG 59

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P AL +APTRELA Q+   +E L A   + V    GGVS HR+ + L+ G  
Sbjct: 60  TRVP--GRPRALVLAPTRELATQISAVIEPLAAAYRMKVTTIFGGVSQHRQVQALKAGVD 117

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL D ++   L +  ++  VLDEAD M DLGF   +  +L ++P   + L+FS
Sbjct: 118 IVVACPGRLDDLLKQGHLTLDGIEISVLDEADHMADLGFLPVVTRLLAATPSSGQRLLFS 177

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K +       ++   +   + + +    VA  D    ++N L   G   
Sbjct: 178 ATLDNDVDKLVKRFLHSPAEHSVDPVDSPVAAMTHHVFAVAGPDAKRELINTL-ASGTGR 236

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +     V L G LSQ  R   L    +G ARV +ATDVAAR
Sbjct: 237 RILFMRTKHHAKRLARQLTQSGIPSVDLHGNLSQGARDRNLAAFANGEARVLVATDVAAR 296

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           G+ + D+ LV+H +  +  +  LHRSGRT RAG  G  V ++    +R  + L R+A +
Sbjct: 297 GVHVDDVALVVHVDPPAEHKAYLHRSGRTARAGGTGDVVTLVLPEQRRDVDALLRKAAI 355


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 199/377 (52%), Gaps = 14/377 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q  ++   L  +D++  AQTGSGKT+A+ L +   L+ +   F       ++ + P+
Sbjct: 26  TKIQAKVIPHALNGRDIIGYAQTGSGKTIAYLLPIIQNLVKKKTAF------FSIILVPS 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+    E      G+ + V +GG+    ++  L    HI++ TPGRL +H+    
Sbjct: 80  RELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQKALLSLNPHILICTPGRLIEHLEKFL 139

Query: 144 LN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            N I  L+ +V+DEAD +  L F+ +   I    PK ++ L FSAT+S  +  L KN  K
Sbjct: 140 KNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELPKNKQSLFFSATMSLNLENLQKNNMK 199

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           + V++ I  + +    +    + +    +D   + +       + +VF  T+    + T 
Sbjct: 200 NPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIYLCNEFNGSSILVFVDTQKCAEKKT- 258

Query: 263 VLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           +LA+ L F    L G ++Q +R   LQ  R G+ ++ IATD+A+RG+D+P+++LV++ +L
Sbjct: 259 LLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKILIATDLASRGLDIPNVDLVLNYDL 318

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEPAPSVEAI 378
               +  LHR GRT RAG+ G ++ ++ Q   ++ ++ E L ++  + + ++ A  +  I
Sbjct: 319 PHLAKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQKIETLVQQKFILLNFKLAHVL--I 376

Query: 379 RERDAQRILQDPLFLDS 395
            E+   ++ Q   FL S
Sbjct: 377 LEQTVDKMKQKVNFLIS 393


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 237 KFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 296

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEW---LYAKTGVV---VAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+   L  + G+     A+CIGG+SV  +
Sbjct: 297 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLHEDGMPSLRCALCIGGMSVKEQ 356

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 357 METIKHGVHMMVATPGRLMDLLQKKMVSLDVCRYLALDEADRMIDMGFEGDIRTIFSYFK 416

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++ 
Sbjct: 417 GQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 476

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  RDG+  V
Sbjct: 477 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDV 535

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 536 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 586


>gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 454

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 175/343 (51%), Gaps = 8/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + GY   T +Q   L P +   DV+  AQTG+GKT A+ L +  TL   
Sbjct: 9   NLDKFLWNALDDMGYTQPTPIQVDALAPVMSGSDVVGIAQTGTGKTFAYLLPILRTL--- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L + PTREL +QV  ELE L     V +A   GG +++ ++  +  G 
Sbjct: 66  --PYSRQENPRVLILVPTRELVLQVVNELEKLTKYIDVRIAGVYGGSNINTQKALIAQGQ 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + L +  ++ VV+DE D MLDLGFR  +  I D  PK+R+ +MF
Sbjct: 124 DIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQHIMF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGA 244
           SAT++  +  L K+Y      + +A       +I      +     + N I+  L    A
Sbjct: 184 SATMTEDVDALIKDYFNKPKFIKVARSGTPLENIKQVGYKIPNFYTKVNFILEELASAKA 243

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               ++F   +    R    L E    QV  +    +Q  R N++    +G+ R+ +ATD
Sbjct: 244 YPKTLLFVRDKRMADRLYLKLEEAFPGQVDLIHSNKTQNYRINSINAFSEGKVRMMVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V ARG+D+ D+  VI+      PEN LHR GRTGRA ++G S+
Sbjct: 304 VMARGLDIDDITHVINVNTPRFPENYLHRIGRTGRAQKEGTSI 346


>gi|86141342|ref|ZP_01059888.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85831901|gb|EAQ50356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 184/340 (54%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + L+E G    T +Q  ++   L     LV  AQTG+GKT A+GL +        ++ +P
Sbjct: 16  KGLNELGIQTPTEIQAQVIPLLLEGATHLVGQAQTGTGKTAAYGLPIL-------EQINP 68

Query: 72  ASAPL-ALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAHIVV 129
               + AL + PTREL+ QV ++L      T  +      GG  +  + ++L     IVV
Sbjct: 69  NQKSIQALILCPTRELSQQVAKQLFKFTKYTDKIFTEAVYGGEKIDIQIKNLSRPTQIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +  K +++S +  VVLDEADEML +GF+  ++ IL          +FSAT+
Sbjct: 129 ATPGRLIDLLSRKAIDLSQVNTVVLDEADEMLSMGFKQQLDDILSHLRNVENKWLFSATM 188

Query: 190 SPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              I  +   +  +DA R+ I S +  + +I+++ +     D+   +++ L+    +  I
Sbjct: 189 PHGIKQIVNQHMAEDAHRIQI-SRDVVNKNIEHKFLQCEEVDKLPILLDFLKTKKGERGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+A+ ++  K L        AL G++ Q+ER   ++  ++   RV +ATD+AARGI
Sbjct: 248 IFCKTKAATAKLAKQLIAKNIAAEALQGDMLQKERDKVMRAFKNESLRVLVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ DL  V+H ++    E   HRSGRT RAG++G+S+ ++
Sbjct: 308 DVQDLTFVVHYQMPDQEEYYTHRSGRTARAGKEGLSLALV 347


>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
           mellifera]
          Length = 1030

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 190/365 (52%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 381 EVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLADG 439

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 440 DGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 499

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 500 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 559

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V V +   +    D++   V++    +   ++ IL  Y    +AI
Sbjct: 560 PRQMEALARRILTRPVEVQVGGRSIVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSAI 619

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 620 IFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGL 679

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ V
Sbjct: 680 DVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAGV 739

Query: 369 WEPAP 373
             P P
Sbjct: 740 PVPEP 744


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 189/351 (53%), Gaps = 13/351 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           GY   +++Q   + P +  KD +  AQ+G+GKT AF + +         R   A  +P A
Sbjct: 39  GYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQ-------RIDLALKSPQA 91

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + ++PTRELA+Q  + ++ + ++  V VA CIGG  V  +    Q+  H++V TPGRL  
Sbjct: 92  IILSPTRELALQTLKVVDGIGSRLEVQVAQCIGGTQVDDDIAAAQS-CHLIVATPGRLLS 150

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            ++ K +  S++K VVLDEADEML  GF + I  I+       ++++ SAT+ P I  L 
Sbjct: 151 LLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELT 210

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFCSTRA 255
           + + +D V + +         I  R  +V L D  +   + +I +    +  ++FC++  
Sbjct: 211 RQFMRDPVSILVKEAELTLDGI--RQYVVDLQDAWKAEVVEDIYKVLSVQQGVIFCNSIG 268

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ ARGID+ ++ L
Sbjct: 269 RVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSL 328

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           VI+ ++   PE  LHR GR+GR GRKG+++  + +  ++  + +  + NV+
Sbjct: 329 VINYDIPREPETYLHRIGRSGRFGRKGVAINFVTEKDKQSMQAITDKFNVT 379


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 187/370 (50%), Gaps = 34/370 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK+   I + + EA   +G    T +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 190 MKLPREIIRYLKEA---KGIKKPTPIQIQGLPVALSGRDMIGIAFTGSGKTLVFALPMVL 246

Query: 61  TLLAENDRF--SPASAPLALAIAPTRELAVQV---------------GRELEWLYAKTGV 103
             +    R        P  L I P+RELA Q                G EL  L A    
Sbjct: 247 LAMDAEKRLPIEAGEGPFGLIICPSRELARQTYDLVNALSDAIKKERGFELRTLLA---- 302

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
                IGG+ +  +    + G H++V TPGRL D +  + +++++ K + LDEAD ++DL
Sbjct: 303 -----IGGIDMGEQEHLFKRGIHMIVATPGRLIDLLNKRRVSLAYCKYLGLDEADRLIDL 357

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF DDI  ++D    +R+ L+FSAT+   I T A++     V VN+      + D+    
Sbjct: 358 GFEDDIRTVMDYFQGQRQTLLFSATMPKKIQTFARSALVRPVEVNVGRAGAANLDVIQEV 417

Query: 224 VLVALSDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             V    +++ IV +L      A   ++FC  +  V    + L     + VA+ G+ SQ+
Sbjct: 418 EYVK---QESKIVYLLECLQKTAPPVLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQE 474

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  A++  +DG+  V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ 
Sbjct: 475 ERDTAIKAFKDGKKDVLVATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRCGKT 534

Query: 342 GMSVFVIPQN 351
           G++   I +N
Sbjct: 535 GVATTFINKN 544


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/337 (35%), Positives = 179/337 (53%), Gaps = 8/337 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAIT 194
             +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI 
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIK 197

Query: 195 TLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             A+   ++ V V+     R+   I    YRA    +  +   +VN+L+   A  AIVF 
Sbjct: 198 DFAERLLEEPVEVSANPSTRERKKIHQWYYRAD--DIEHKTKLLVNLLQQPEATRAIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  V + ++    +  LHR GRTGRAG+KG ++ ++
Sbjct: 316 DVSHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLV 352


>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 456

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/335 (32%), Positives = 179/335 (53%), Gaps = 14/335 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQE  +   L+ +D +  A+TGSGKT AF L +   L    D +        L + PT
Sbjct: 26  TPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPVLQKL--SEDPY----GIFCLVLTPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+  +   L    G+   + +GG+ +  +  +L N  H+VV TPGRL DHIR   
Sbjct: 80  RELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQASELSNQPHVVVATPGRLADHIRSSS 139

Query: 144 -LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
             ++S ++ +++DEAD +L+ G   F  D+E I+ + P KR+ L+FSAT++  +  L   
Sbjct: 140 TFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMPALPAKRQTLLFSATLTDTLQELKNI 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNAIVFCSTRA 255
                      SE R   ++D R +L     +D  +V++++     H   + I+F +T  
Sbjct: 200 AMNKPFFWESKSETRTVDELDQRYILTPEKVKDAYLVHLIQTFTDQHDDWSIIIFTNTCK 259

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +    T +L +  F  ++L   + Q++R   L   +    ++ IATDVAARG+D+P +++
Sbjct: 260 NCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKFKASVYKILIATDVAARGLDIPTVQV 319

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 320 VINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354


>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           anisopliae ARSEF 23]
          Length = 714

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 187/371 (50%), Gaps = 29/371 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +PQ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 279 LPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLP 338

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +    P AL +APTREL  Q+  E +      G      +GG S+  +   L+NG
Sbjct: 339 PLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAFALRNG 398

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I+V TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 399 AEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 458

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +M++AT+ P +  +AK Y +      I +       +
Sbjct: 459 TDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGNAGEAVDTV 518

Query: 220 DYRAVLVALSD-RDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   ++  D R   +  IL  +  A   IVF + + +     + +    +  V L G 
Sbjct: 519 EQRVEFISGEDRRKKRLQEILSKNDFAPPIIVFVNIKRNCDAVARDIKSMGWSTVTLHGS 578

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  ++++ E+  HR GRTGR
Sbjct: 579 KTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGRTGR 638

Query: 338 AGRKGMSVFVI 348
           AG+ G+++  +
Sbjct: 639 AGKSGVAITFL 649


>gi|302543660|ref|ZP_07296002.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461278|gb|EFL24371.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 736

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 188/361 (52%), Gaps = 5/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   +  KD+L   +TGSGKT++FGL L ++L   +
Sbjct: 70  LPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLTSLAGGH 129

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 130 ---TEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERGVD 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+FS
Sbjct: 187 ILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +L K Y  D V   + S     + + +  ++V   D+      I    G   
Sbjct: 247 ATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVVKPKDKAPVTAAIAARKG--R 304

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 305 TIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAAR 364

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V 
Sbjct: 365 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGVD 424

Query: 367 V 367
            
Sbjct: 425 A 425


>gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 522

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 27/365 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 108 LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 167

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 168 PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 227

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
           A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 228 AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 287

Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 288 DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 347

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R   V  + +   + ++L  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 348 QRVEFVPEARKKQRLQDVLE-NATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 406

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 407 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 466

Query: 341 KGMSV 345
           KG+++
Sbjct: 467 KGLAI 471


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 210/441 (47%), Gaps = 20/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 280 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 339

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG       R + 
Sbjct: 340 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIV 399

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 400 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 459

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT    I  LA ++ K + + V +        D+    + V    +   +V 
Sbjct: 460 QRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 519

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 520 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 579

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F    +    A
Sbjct: 580 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLA 639

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F  S +G        + A  D  K 
Sbjct: 640 QPL-----VKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRG------GAVFASVDTRKN 688

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG+ + +   PV
Sbjct: 689 YQGKHTLNTAGISSSQAPNPV 709


>gi|323493979|ref|ZP_08099095.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311606|gb|EGA64754.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 412

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 177/325 (54%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q  ++   L +KDVL  A TGSGKT+A+ L L   L A +++        A+ + PT
Sbjct: 24  TDIQTLVIPQMLADKDVLALANTGSGKTLAYTLPLVEKLKANSEQ-------QAVVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV + +  L +  G+      GGV    +++ L+    I+V T GRL D I   G
Sbjct: 77  RELAMQVSQVINQLASPLGLSAVCLCGGVDKAEQQQALEQQPQILVATTGRLIDLI-NDG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S +  +VLDEAD +LD+GF  D++ I +++ +KR+  MFSAT S  +   A    + 
Sbjct: 136 LSLSKVAYLVLDEADRLLDMGFWPDVQTIAENTAQKRQTAMFSATFSEQLKQQAGTLMRS 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
           A+ ++    N  + DI  R  LV    +  A++ +++ H  K  +VF   + +     K 
Sbjct: 196 AIELSAHQNNSTNKDIAERLYLVNKGSKTKALIELIKQHQWKQVLVFIGAKENADGLNKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G   Q ER   L   + G+++V IATD+ ARG+ +  L  VI+ EL  
Sbjct: 256 LNKAGIASQALHGNKDQTEREQILAQFKSGQSQVLIATDLLARGVHIEQLPAVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGEQGIALSLV 340


>gi|190407035|gb|EDV10302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207345345|gb|EDZ72198.1| YGL078Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259146428|emb|CAY79685.1| Dbp3p [Saccharomyces cerevisiae EC1118]
          Length = 523

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   S L+ +  +         L I+PTRELA Q+   L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNL 202

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+  + +VV TPGRL D ++   +++S +  +VL
Sbjct: 203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  LA  +  + ++V+I + +
Sbjct: 262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIVFCSTRASVSRFTKVLAE 266
           +  ++     ++  +  R  +  ++ +L+ YH      +  ++F   +   +R  + L  
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 442 DYVHRIGRTGRAGQTGTA 459


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 188/365 (51%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   +  + +   TS+Q       L  +D++  A TGSGKT+++ L  A   +   
Sbjct: 165 FPEYVMREIKRQNFKEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILP-AIVHINSQ 223

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P+AL +APTRELA Q+ +  +     +G+      GG     + RDL NG  
Sbjct: 224 PKLCRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARDLDNGVE 283

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 284 IVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 343

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAK 245
           AT    +  LA+ + KD  ++N+ S     +    + + V    +++  +  +L+   A+
Sbjct: 344 ATWPKEVKNLAEEFLKDYAQINVGSLQLSANHNILQIIDVCQEYEKEIKLSTLLKEIMAE 403

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 404 KENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 463

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +  F  P N  +  +  ++
Sbjct: 464 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPSNAGKANDLVQV 523

Query: 360 FREAN 364
            +EAN
Sbjct: 524 LKEAN 528


>gi|332528278|ref|ZP_08404283.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042298|gb|EGI78619.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 570

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 137/396 (34%), Positives = 197/396 (49%), Gaps = 64/396 (16%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLRE--------KDVLVSAQTGSGKTVAFGLALA 59
           P++I +A+++ GY   T+VQ+ ++   L           D++VS+QTGSGKT AF L + 
Sbjct: 38  PELI-QAVADLGYTQPTAVQQRVIPLALPTHDPSHHGYNDLMVSSQTGSGKTAAFLLPVL 96

Query: 60  STLLAE------------------------------------NDRFSPASAPLALAIAPT 83
            TL+ +                                    N R   A+ P AL + PT
Sbjct: 97  HTLIQQQADAANREREEYERACADAAAKGEPAPKRHKRKDPTNPRNFKAAVPGALVLCPT 156

Query: 84  RELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           RELA QV  + +E +    G+ +A  +GG+    +   LQN A +VV TPGRL D  R  
Sbjct: 157 RELAQQVAHDAIELVKHCRGLRIANVVGGMPYQLQIAKLQN-AGLVVATPGRLLDLQRSM 215

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            + +  ++ +V+DEAD MLDLGF DD+  I   +  +R+ +MFSAT +P I  LA     
Sbjct: 216 QIKLDQVQFLVVDEADRMLDLGFTDDLAEINALTANRRQTMMFSATFAPRIQQLAMRVMH 275

Query: 203 D----AVRVNIASENRQHSDI-------DYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           D      +V I + + +H++I       D  A   AL D      + LR      AIVF 
Sbjct: 276 DNGSQVKKVQIDAPHEKHANIKQVLHWADNFAHKRALLD------HWLRDANIDQAIVFA 329

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ST+         L +  F  VAL G LSQ  R+  L  +R G+ +  +ATDVAARGID+P
Sbjct: 330 STQVECDGLAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVKFLVATDVAARGIDVP 389

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +  V +  L    E+  HR GRTGRAGR G++V +
Sbjct: 390 TITHVFNFGLPMKAEDYTHRIGRTGRAGRDGIAVTI 425


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 276 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 335

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 336 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 395

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 396 QGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 455

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 456 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 515

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 516 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 575

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 576 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 635

Query: 357 ERLFR 361
           + L +
Sbjct: 636 QPLVK 640


>gi|242237660|ref|YP_002985841.1| ATP-dependent RNA helicase RhlB [Dickeya dadantii Ech703]
 gi|242129717|gb|ACS84019.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 428

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PLVI-EALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHHLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG  + +  GG    ++ + L
Sbjct: 75  ---PALADRQVNQPRALIMAPTRELAVQIHTDAEALARVTGFKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           +NG  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ENGVDILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIVFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTHGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSI 357


>gi|147774689|emb|CAN74342.1| hypothetical protein VITISV_005473 [Vitis vinifera]
          Length = 661

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 184/357 (51%), Gaps = 38/357 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L  
Sbjct: 268 PELL-KAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPP 326

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P A+ +APTRELA Q+  E        G+ V      VS+           
Sbjct: 327 ISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKV------VSI----------- 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------ 179
            +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +  +LD+ P        
Sbjct: 370 -VVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPEN 428

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  
Sbjct: 429 EDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKG 488

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+
Sbjct: 489 SEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLE 548

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++ 
Sbjct: 549 GFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 605


>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 416

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 180/346 (52%), Gaps = 9/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +A    G+     +Q   + P + +KD+  +A+TGSGKT A+ L +   +      
Sbjct: 15  QPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYMLPIFHHMWENPHS 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F       AL  APTRELA Q+      +     V V   IGGV    + + L+   H+V
Sbjct: 75  F------FALVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKALKAQPHVV 128

Query: 129 VGTPGRLCDHIRG--KGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL   IR   K + ++ ++ +V DEAD ML +  F+ DI+ IL       +  +F
Sbjct: 129 VATPGRLARLIRNNPKVIPLNKVECLVFDEADNMLREPSFQTDIQLILSKLNSTHQTYLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK    D VR+++ S N     +    V+     ++  +V ++  +  K
Sbjct: 189 SATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVALMNQYPDK 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  +  + +  + +L+   F+ +   G+L Q+ER NA+   ++G  RV +AT+V +
Sbjct: 249 QTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRVLVATNVGS 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+P ++LVI+ EL    E  +HR GR GRA R G++V +I  N
Sbjct: 309 RGLDVPHVDLVINYELPEEHEEYIHRVGRAGRAERSGVAVTIITAN 354


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V + +A  ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEIKLAV-SKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQ 353


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V + +A  ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEIKLAV-SKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQ 353


>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
 gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 442

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  QSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   ++++L+      A+
Sbjct: 195 AIKDFAERILNEPVEIEADPARRERKKIQQWYYRAD--DIKHKTALLLHLLKQPEVTRAV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GEL Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 VFVRKRERVHEVCGWLREAGINTSYLEGELVQAKRNEAIKRVVDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 313 DIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGIAISLV 352


>gi|260770091|ref|ZP_05879024.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615429|gb|EEX40615.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 412

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/326 (34%), Positives = 172/326 (52%), Gaps = 10/326 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDVL  A TGSGKT+A+ L L        D+        AL + PT
Sbjct: 24  TDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL-------DKLHANPQQKALVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           RELA+QV   +  +  +   + AVC+ GGV   ++++ L    HI+V T GRL D +   
Sbjct: 77  RELAIQVSEAINQV-GQALELNAVCLCGGVDKAQQQQALATNPHILVATTGRLVDLV-NH 134

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           GL++SH+  ++LDEAD +LD+GF  D++ I   +  +R+  MFSAT S A+   AK    
Sbjct: 135 GLDLSHIHTLILDEADRLLDMGFWPDVQNIAMQTANQRQTAMFSATFSEALKEKAKQLMH 194

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
              +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K
Sbjct: 195 APKQVAAHQENSTNQDITETLFLVNKGSKTKALIELIQQNAWTRVLVFIGAKENADGLAK 254

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L +      AL G  SQ ER  AL   + G+  V IATD+ ARGI +  L +VI+ EL 
Sbjct: 255 KLNKAGVSTTALHGNKSQDEREEALAQFKSGQVNVLIATDLLARGIHIEQLPVVINFELP 314

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
            + E  +HR GRT RAG +G+++ ++
Sbjct: 315 MHAETYVHRVGRTARAGEQGVAMSLV 340


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V + +A  ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEIKLAV-SKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQ 353


>gi|160948183|emb|CAL91030.1| DEAD box helicase [Macrostomum lignano]
          Length = 860

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 7   IPQV-IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P V +   L +  Y  LT VQ+  +   L+ +D++  AQTGSGKT AF L LA  ++AE
Sbjct: 420 LPSVMLDNILRKYNYNKLTPVQKYGIPIILKGRDLMACAQTGSGKTAAFLLPLAK-MIAE 478

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            D      A     P+AL + PTREL  Q+        A T +      GG      R +
Sbjct: 479 LDTNDSTVAQYTTYPVALILTPTRELCNQIYDFARGFRAGTNIHAKRVYGGPKTEYLRAE 538

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L NG HI+V TPGRL D      ++++  + +VLDEAD+MLD GF D + + LD  P  R
Sbjct: 539 LANGCHILVATPGRLKDFAERNIVSLNKTRLLVLDEADQMLDRGFMDSVTWTLDQMPSDR 598

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +++MFSAT    I  LA+ Y ++ + + +      + D+      V   D+  A++ IL+
Sbjct: 599 QIVMFSATFPNQIQALAQQYLQNYLYLTVGQVGAANPDVTQEVREVQQDDKQAALIEILK 658

Query: 241 Y------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +            ++F  ++        +L++  F    + G+  Q+ER  +L+    GR
Sbjct: 659 HCRSDPSQADDRILIFVESKRRADYVGLMLSDGGFPCTTIHGDRLQREREISLRSFLRGR 718

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + +AT+V+ARG+D+  +ELVI+ +L ++ +   HR GRTGR G  G S+
Sbjct: 719 LPIMVATNVSARGVDINGIELVINMDLPNDFDMYAHRIGRTGRCGNPGKSI 769


>gi|160871634|ref|ZP_02061766.1| dead/deah box helicase [Rickettsiella grylli]
 gi|159120433|gb|EDP45771.1| dead/deah box helicase [Rickettsiella grylli]
          Length = 421

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 185/360 (51%), Gaps = 16/360 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I   +  +GY   T +Q   +   L+ +DV+  AQTG+GKT A+ L L   L   
Sbjct: 7   NFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLLQQLTE- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQNG 124
                P     AL ++PTR+LA Q+   +     +T +  A   GG ++  R+ + L  G
Sbjct: 66  ----GPPGQLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQYQLLTGG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             I+V  PGRL D ++GK  N +  +K +VLDEAD + D GFRD I  IL   P +R+ L
Sbjct: 122 VDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLPPRRQNL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  I  L        VR+ I  E +    I      V+ + + N +  IL+ H 
Sbjct: 182 LFSATMSADIRLLIDKVLHRPVRIQIG-EPKPAVTITQTLFPVSETLKVNLLETILQNHS 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +AI+F  T+       + LAEHL    ++  +  G LSQ  R  AL   R G  +  +
Sbjct: 241 IHSAIIFTRTKHRA----QCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKFLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  L  VI+ ++ +      HR GRTGRA + GM+  +I +N +R+ + +
Sbjct: 297 ATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQSI 356


>gi|256269719|gb|EEU04989.1| Dbp3p [Saccharomyces cerevisiae JAY291]
          Length = 523

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   S L+ +  +         L I+PTRELA Q+   L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNL 202

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+  + +VV TPGRL D ++   +++S +  +VL
Sbjct: 203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  LA  +  + ++V+I + +
Sbjct: 262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIVFCSTRASVSRFTKVLAE 266
           +  ++     ++  +  R  +  ++ +L+ YH      +  ++F   +   +R  + L  
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 442 DYVHRIGRTGRAGQTGTA 459


>gi|239990555|ref|ZP_04711219.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 519

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 159/281 (56%), Gaps = 9/281 (3%)

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP AL + PTREL  QV  +L        V V    GG +   +   L+ G  ++VGTPG
Sbjct: 20  APQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPG 79

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + L++SH++ +VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+
Sbjct: 80  RLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAV 139

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNA 247
            +LA+ Y      +N  S + + + +       YRA  +   D+   +  IL+  G   A
Sbjct: 140 ISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNM---DKPEMLARILQADGRGLA 196

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARG
Sbjct: 197 MIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARG 256

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  +  V++ +   + +  LHR GRTGRAG KG+++ ++
Sbjct: 257 IDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLV 297


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 266 DLCQTLNNNITKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 325

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T +   V  GG  +    R + 
Sbjct: 326 GITASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCIRPVVIYGGTQLGHSIRQIM 385

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD----IEFILDSSPK 178
            G +I+  TPGRL D I  + + +  ++ +VLDEAD MLD+GF  +    I F    S  
Sbjct: 386 QGCNILCATPGRLMDIIGKEKIGLRQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKD 445

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K D + V +       SD+    + V    +   +V 
Sbjct: 446 QRQTLMFSATFPEEIQRLAGEFLKTDYLFVAVGQVGGACSDVQQTVLQVGQYSKREKLVE 505

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 506 ILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 565

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P+     A
Sbjct: 566 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNIGKAISFFDPEPDSHLA 625

Query: 357 ERLFR 361
           + L +
Sbjct: 626 QPLVK 630


>gi|328883901|emb|CCA57140.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 772

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 5/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L +TL   +
Sbjct: 63  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLATLAGGH 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 123 ---TDKKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + L+FS
Sbjct: 180 ILVATPGRLRDIINRGACSLENVQIAVLDEADQMADLGFLPEVTELLDQVPVGGQRLLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +L K Y  D V   +       + + +  ++V   D+      I    G   
Sbjct: 240 ATLENEIDSLVKRYLVDPVTHEVDPSAGAVTTMTHHVLVVKPKDKAPVTAAIAARKG--R 297

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 298 TIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 357

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G+ V +   + +R+  RL  +A V 
Sbjct: 358 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLALPHQRRQIFRLMEDAGVD 417

Query: 367 V 367
            
Sbjct: 418 A 418


>gi|67605637|ref|XP_666695.1| DEAD/DEAH box helicase [Cryptosporidium hominis TU502]
 gi|54657739|gb|EAL36467.1| DEAD/DEAH box helicase [Cryptosporidium hominis]
          Length = 678

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/432 (30%), Positives = 209/432 (48%), Gaps = 36/432 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L  RG   L  +Q         +KDVL  A+TG+GKT+AF L +   LL +  +F P 
Sbjct: 27  EILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIERLLKKG-KFDPN 85

Query: 73  SA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA QV  E E +  K    V    GG   + + ++++ G  IVV
Sbjct: 86  KHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQIQEIKKGVDIVV 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------------SSP 177
           G PGR+ D I    LN+S +  + LDEAD+ML++GF++ ++ I+D            S  
Sbjct: 146 GCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVRKETGDGETHSRQ 205

Query: 178 KKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIA---------SENRQHSDIDYRAVLVA 227
            K ++L+FSAT+ P +   L +    D V V++           E    S I + A+  A
Sbjct: 206 NKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCA 265

Query: 228 LSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              R   + +I+  +   N   I+F  T+ + +    + +E       L G++ Q +R  
Sbjct: 266 YPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIA-MRSEISKMCQVLHGDIQQNQREI 324

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ALQ  ++GR R  +ATDVAARG+ + D+ +VI      + +  +HRSGRTGRAG+ G ++
Sbjct: 325 ALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAI 384

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-------FLDSIQG 398
                +       + + + +S      P  E I ++ A  I +D L        LD ++ 
Sbjct: 385 MFCNMSDYPFLSSIEKASKISFQRIGVPQYEEILQKTADSIGKDLLEKDIPSAMLDCVRD 444

Query: 399 DEKKMVDVLLAK 410
             K ++  L  K
Sbjct: 445 PAKHIIQGLWRK 456


>gi|300120547|emb|CBK20101.2| unnamed protein product [Blastocystis hominis]
          Length = 553

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 189/365 (51%), Gaps = 34/365 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ IG  L  +G   L  +Q    +     KD++  A TG GKT+AF L +   +   N 
Sbjct: 24  PETIG-ILHSKGITELFPIQALSFDAIYDGKDLIGRAPTGQGKTLAFALPIVEKIYKLNL 82

Query: 68  RFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           R    S APL L ++PTRELA Q+  ++  +      +  VC+ GG     +   L+ G 
Sbjct: 83  RPPRRSRAPLCLVLSPTRELAQQIDEQIRMIAPS---LRTVCLFGGAPFDPQEFALRRGV 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--------- 176
             VVGTPGR+ DH+    L +  L+  +LDEAD MLD+GF +D+E ++D +         
Sbjct: 140 EFVVGTPGRVLDHLERGTLQLGELQWFILDEADRMLDMGFSEDVEKVVDYAIKSGGETKG 199

Query: 177 ----PKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHS-DIDYRAVLVALSD 230
               P + ++L+FSATI   +  +   Y   D V V++ +E  + S D+ +  +      
Sbjct: 200 PRIVPDRIQVLLFSATIPSWVREVMTKYMHPDKVTVDLVTEKEKASVDVRHLVLRCPWEA 259

Query: 231 RDNAIVNILR-YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVA--LSGELSQQERSNA 286
           R   I +++  Y G    AIVFC  + S +       E   + +A  L G++ Q+ R   
Sbjct: 260 RAKVIADLIEVYCGVDGRAIVFCDMKKSCNELA---GEECLRSIAGVLHGDIPQKTREQT 316

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGR 340
           L+  +DG+ R  +ATDVAARG+D+  + LVI+ E        ++ E  +HRSGRTGRAGR
Sbjct: 317 LKDFKDGKFRCLVATDVAARGLDIQGITLVINREPPATRSGVADVETYIHRSGRTGRAGR 376

Query: 341 KGMSV 345
           KG+ +
Sbjct: 377 KGVCI 381


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 184/345 (53%), Gaps = 14/345 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I  AL        TS+QE  +   L+  D++ +AQTGSGKT AF L +   L  + ++
Sbjct: 37  QEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPILQAL-KDGEK 95

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P      L IAPTRELA+Q+   ++       +   V  GGV V  +R+ L+ G+ I+
Sbjct: 96  AKPNHV-RCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYLKRGSDIL 154

Query: 129 VGTPGRLCD-HIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGRL D H RG  L  +++HL   VLDEAD +LDLGF  +++ I+ + PK+R+ L+F
Sbjct: 155 VATPGRLLDLHQRGDILFDSLTHL---VLDEADRLLDLGFAKELDQIIQALPKQRQTLLF 211

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +P I  LAK   N  KD   +  A+      +I+     V    +   ++ +L   
Sbjct: 212 SATFAPPIKKLAKKILNQPKDVTTIQKAAAK---PNINQWLHPVDKKRKTELLLELLNRK 268

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +T+ +     + L +      AL  + +Q ER +     ++    + +ATD
Sbjct: 269 PHAQVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISILVATD 328

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           VAARGID+ +L LVI+ +L    E+ +HR GRTGRAG  G +  +
Sbjct: 329 VAARGIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSI 373


>gi|6321360|ref|NP_011437.1| Dbp3p [Saccharomyces cerevisiae S288c]
 gi|1708151|sp|P20447|DBP3_YEAST RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|172582|gb|AAA73137.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1322595|emb|CAA96783.1| DBP3 [Saccharomyces cerevisiae]
 gi|285812127|tpg|DAA08027.1| TPA: Dbp3p [Saccharomyces cerevisiae S288c]
          Length = 523

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   S L+ +  +         L I+PTRELA Q+   L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNL 202

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+  + +VV TPGRL D ++   +++S +  +VL
Sbjct: 203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  LA  +  + ++V+I + +
Sbjct: 262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIVFCSTRASVSRFTKVLAE 266
           +  ++     ++  +  R  +  ++ +L+ YH      +  ++F   +   +R  + L  
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 442 DYVHRIGRTGRAGQTGTA 459


>gi|309813271|ref|ZP_07706987.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308432767|gb|EFP56683.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 906

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 194/373 (52%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E ++  G      +Q A +   +  KDVL   +TGSGKT+ FGL + + L AE 
Sbjct: 402 LPEALVERMARDGITKPFPIQAATIPDAMAGKDVLGRGRTGSGKTLGFGLPMLARL-AEG 460

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A  P A+ + PTRELA+QV   L+ L    G+   +  GG+    +   L+ G  
Sbjct: 461 GK-ARAHQPRAIVLVPTRELAMQVSDALQPLVHVVGLKHKLVAGGMPYEPQLSALERGVD 519

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D I     ++S ++  VLDEAD M ++GF + I  ILD  P+  + L+FS
Sbjct: 520 VLIATPGRLSDLIERGAADLSRVEIAVLDEADHMAEMGFLEAITEILDLVPEGGQRLLFS 579

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I ++   Y  D V  +        + +++ A+L+   D+      +    G   
Sbjct: 580 ATLDRGIDSVVDKYLVDPVTHSTDDGTATVTTMEHHALLIEPRDKKVVTAEVANREG--R 637

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R    L E      AL G L+Q +R+  L   +DGR  V +ATDVAAR
Sbjct: 638 TVVFVRTKMGADRVAAELREQGVMAAALHGGLNQGQRNRVLSAFKDGRVPVLVATDVAAR 697

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + ++ +V+  +  ++ ++ LHR+GRT RAG KG  + +   + +R  +RL   A V 
Sbjct: 698 GIHVDEVGVVLQVDPPADHKDYLHRAGRTARAGEKGTVITLALPHQRRSMQRLLDSAGVD 757

Query: 367 V-VWEPAPSVEAI 378
           V +    P  EAI
Sbjct: 758 VSLVRTRPGDEAI 770


>gi|111223801|ref|YP_714595.1| putative DEAD-box RNA helicase [Frankia alni ACN14a]
 gi|111151333|emb|CAJ63045.1| Putative DEAD-box RNA helicase (partial) [Frankia alni ACN14a]
          Length = 437

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/348 (36%), Positives = 174/348 (50%), Gaps = 7/348 (2%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--PLALAIAPT 83
           +Q + L   L  ++VL  A+TGSGKT+AFGL     +LA      PA+   P AL + PT
Sbjct: 1   MQASTLPDVLAGENVLGRAKTGSGKTLAFGL----PILARLASGGPAAPRRPRALVLVPT 56

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   LE L     + +A   GG S+ R+   L+ G H+VV TPGRL D +    
Sbjct: 57  RELAQQVSDALEPLTRALNLRLAPVYGGTSISRQISALRRGVHLVVATPGRLTDLVERSA 116

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
             +  ++  VLDEAD M DLGF   +  +LD++P   + L+FSAT+   +  L ++Y  D
Sbjct: 117 CELGEIEMTVLDEADFMCDLGFLPAVRALLDATPSTGQRLLFSATLDREVEVLVRDYLPD 176

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
            V V I SE  Q + +   A+         A+V  L   G+   +VF  T+    R  + 
Sbjct: 177 PVLVAIDSETSQVTTLVRHALEAPDRAAQVALVTAL-AGGSGRTLVFVRTQRDADRVAES 235

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L+        L G + Q  R+ AL    DG  RV +ATDVAARGI +  + LVIH     
Sbjct: 236 LSRAGVPAEPLHGGMPQGARTRALAGFTDGFYRVLVATDVAARGIHVDGIRLVIHLGPPE 295

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +   HR GRT RAG  G  V V     + +   L R   +    EP
Sbjct: 296 DAKTYQHRGGRTARAGADGADVLVTLPAERGKVRGLLRAVGIEARPEP 343


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 179/339 (52%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71
           L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +  +   + R   
Sbjct: 23  LTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRAGK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++ +     G +  VC+ GGVSV+ + + L+ G  I+V
Sbjct: 83  GNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL      D + V + S N   S +  R   V    +   + ++++ H  + A++
Sbjct: 203 PEQVKTLTHELLNDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQHEWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + S       L +         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 261 FVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 359


>gi|322705100|gb|EFY96688.1| ATP-dependent RNA helicase dbp3 [Metarhizium anisopliae ARSEF 23]
          Length = 596

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 186/336 (55%), Gaps = 22/336 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A     L  +DV+  A+TGSGKT+AF L    ++ A   + + A     + ++PT
Sbjct: 200 TPIQAASWPSTLSGRDVVGVAETGSGKTMAFALPCVESVSAIGKKGTKA-----VIVSPT 254

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q   +L  L A   +      GG S   +R  +  GA I+V TPGRL D +    
Sbjct: 255 RELAMQTHTQLASLAALAKLKCVCLFGGSSKDEQRAMVNRGADIIVATPGRLKDFMSDGT 314

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSATISPAITTLAKNYQ 201
           +++S  +  VLDEAD MLD GF DDI+ IL +  + ++R+ LMF+AT   ++  LA  + 
Sbjct: 315 VDLSGCQFAVLDEADRMLDKGFEDDIKQILGACLARERRQTLMFTATWPQSVQALASTFM 374

Query: 202 KDAVRVNIAS----------ENRQHSDIDYRAVLVALSDRDNAIVNILRYH---GAKN-- 246
            D V++ I S          E + ++ I  +  +V   D++  ++ IL+ H     KN  
Sbjct: 375 VDPVKITIGSGGKETENGSVELQANTRISQKVEVVDPKDKEFRLLQILKQHQQGKQKNDR 434

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC  +   +R    L+    +V  + G+L Q++R+ +L+  + G+  V +ATDVAAR
Sbjct: 435 ILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAAR 494

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+P+++LVI+       E+ +HR GRTGRAG+ G
Sbjct: 495 GLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTG 530


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 180/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  AQ+G+GKT   G+++   L  +           AL
Sbjct: 47  GFERPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATLGISILQMLDTQ------LRETQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     V    C GG ++  + R L  G H++ GTPGR+ D 
Sbjct: 101 VLSPTRELASQIQKVILALGDYMNVQCHACYGGTNIGEDIRKLDYGQHVISGTPGRVFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K  VLDEADEMLD GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 161 IRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHEILEMTS 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    V V   + + + + ++        +++FC+T+  V
Sbjct: 221 KFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTVTQSVIFCNTKRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +  T+ + ++ F V ++ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 281 AWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAGDSRVLITTDLWARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 341 NYDLPNNRELYIHRIGRSGRFGRKGVAI 368


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 145 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 204

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 205 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 264

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 265 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 324

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 325 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 384

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 385 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 444

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 445 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 492


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V + +A  ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEIKLAV-SKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQ 353


>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 417

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 14/378 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ E L+ +G      +Q A +   L  +DVL   +TGSGKT+AFGL L   L     
Sbjct: 15  PALVSE-LAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPL---LHRTAG 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +    PLAL + PTRELA QV   L    A  G+  A  +GG+S+ R+   L+ GA +
Sbjct: 71  RRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAGAEV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFS 186
           +V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L+  +P  +RML FS
Sbjct: 131 LVATPGRLHDLIDRGDARLDQVTITVLDEADQMADMGFLPQVTKLLEQVAPGGQRML-FS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  ++       + + +  + +   D+  A+ +I    G   
Sbjct: 190 ATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDKPAALAHIAAREG--R 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+    R  + L     +  AL G  SQ +R+  L+  R G+    +ATDVAAR
Sbjct: 248 TIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++A+  +  ++ LHR GRT RAG  G  V ++  + +R   RL   A ++
Sbjct: 308 GIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTAGIN 367

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P    +R  D++
Sbjct: 368 ------PKTTRVRAGDSE 379


>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
 gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
          Length = 615

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 185/352 (52%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             PQ I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 180 KFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQ 239

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  F  +  P  L I P+RELA Q    +E+ Y K         +   +CIGG+SV  
Sbjct: 240 EKRLPFCKSEGPYGLIICPSRELAKQTHTIIEY-YCKLLEEEGAPHMRSVLCIGGMSVKD 298

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI  I    
Sbjct: 299 QMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIRTIFSYF 358

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++
Sbjct: 359 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLL 418

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  ++G+  
Sbjct: 419 ECLQ-KTPPPVLMFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKD 477

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I
Sbjct: 478 VLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFI 529


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 195/361 (54%), Gaps = 13/361 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   ++   
Sbjct: 245 PHIIDE-MKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHISNQP 302

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                  P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G 
Sbjct: 303 PLMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLERGV 362

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M+
Sbjct: 363 EVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMW 422

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR---- 240
           SAT    +  LA ++  D +++NI S N   + +I     +   +++   +V +L+    
Sbjct: 423 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQLLVRLLKEITS 482

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                G+   I+F  T+  V    +++    +   ++ G+ SQ ER + L+  R+G++ +
Sbjct: 483 PSNNGGSNKIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSERDSVLKDFRNGKSNI 542

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++  
Sbjct: 543 LIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQAR 602

Query: 357 E 357
           E
Sbjct: 603 E 603


>gi|242801276|ref|XP_002483729.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717074|gb|EED16495.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 803

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 194/374 (51%), Gaps = 32/374 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + + + GY + T +Q A +   L+ +D++  A TGSGKT +F L L   +  L 
Sbjct: 370 LPRRLLDLVKQVGYTDPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLFVYISELP 429

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +         V   +GG S+  +   L+
Sbjct: 430 RLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSLEEQAYSLR 489

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           +GA I++ TPGRL D +  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 490 DGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 549

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +M++AT+  A+  +A+ Y +    V I +  +  
Sbjct: 550 PDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGQAV 609

Query: 217 SDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++ R   VA  D R   + +IL     +  I VF + + +     K + +  F  V L
Sbjct: 610 DTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQMGFSSVTL 669

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GR
Sbjct: 670 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR 729

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG+ G+++  +
Sbjct: 730 TGRAGKSGVAITFL 743


>gi|226499134|ref|NP_001147316.1| ATP-dependent rRNA helicase spb4 [Zea mays]
 gi|195609842|gb|ACG26751.1| ATP-dependent rRNA helicase spb4 [Zea mays]
          Length = 641

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 198/368 (53%), Gaps = 28/368 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL   G+   T VQ A +   L  KDV V A TGSGKT+AF + +   L     
Sbjct: 29  PEVV-DALDRGGFQRCTPVQAAAIPHLLSHKDVAVDAATGSGKTLAFIVPVVEIL---RR 84

Query: 68  RFSPASAP--LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN- 123
           R SP  +   LAL I+PTREL+ Q+    +  +A   GV   + +GG+ +  E + ++  
Sbjct: 85  RSSPPKSHEVLALIISPTRELSSQIFNVAQPFFATLNGVSSMLLVGGLDIKAELKKVEEE 144

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA+I+VGTPG+L D +    L   +L+ ++LDEAD +LD+GF+  I FIL   PK RR  
Sbjct: 145 GANILVGTPGKLFDIMHTDALEYKNLEILILDEADRLLDMGFQKHINFILSMLPKLRRTG 204

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---------------IDYRAVLVAL 228
           +FSAT + A+  L+K   ++ +RV + +E +  S                +    +L   
Sbjct: 205 LFSATQTKAVADLSKAGLRNPIRVEVKTEAKSTSKDAGQQELGPSITPLGLRLEYMLCEA 264

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL----AEHLFQVVALSGELSQQERS 284
           S + + +V+ L  +  K  +V+ +T A V  +  VL    +     ++A  G++ Q  R 
Sbjct: 265 SKKSSQLVDFLVQNSGKKIMVYFATCACVDYWAVVLPLINSLKGSPIIAYHGKMKQSLRE 324

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL       + V + TDVAARG+D+P ++L++  +   +P   +HR+GRT R  ++G +
Sbjct: 325 KALASFSALSSGVLVCTDVAARGLDIPSVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDA 384

Query: 345 -VFVIPQN 351
            VF++P+ 
Sbjct: 385 IVFLLPKE 392


>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 574

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 5/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L + 
Sbjct: 1   MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60

Query: 60  STLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
             L    A  ++F       AL + PTRELA QV   ++       +   V  GGV ++ 
Sbjct: 61  HKLSQSEAARNKFG-GIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ G  I+V TPGRL D ++   L++S ++ +VLDEAD MLD+GF  D++ +L   
Sbjct: 120 QISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVV 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK ++ L+FSAT S  I  LA    K  + + +   N     I      V    +   + 
Sbjct: 180 PKDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLIHPVGRGKKKALLA 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I++       +VF  T+   +   + L +     +AL G  SQ  R+ AL   + G  R
Sbjct: 240 HIVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGDIR 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +ATD+AARGID+ DL  V++ ++ +  E+ +HR GRTGRAG  G +V ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLV 351


>gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197]
 gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
 gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
          Length = 421

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 187/350 (53%), Gaps = 14/350 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  ++   LL
Sbjct: 14  FSLHPKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHYLL 72

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +      PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++
Sbjct: 73  SH-----PAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P
Sbjct: 128 LKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187

Query: 178 --KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +
Sbjct: 188 PANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLL 247

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++       AI+F +T+         LA    +V  L+G+++Q++R   L     G  
Sbjct: 248 QTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDL 307

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 308 DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 178/342 (52%), Gaps = 16/342 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 206 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFG 265

Query: 73  ----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++
Sbjct: 266 RQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLL 325

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLM 184
           V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++         R+ LM
Sbjct: 326 VATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLM 385

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  HG 
Sbjct: 386 FSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGT 445

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+M R GR  + +AT V
Sbjct: 446 TGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAV 505

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 506 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 547


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  +E N P  + E +  + + + T++Q       L   D++  AQTGSGKT+++ L  A
Sbjct: 90  MNFYEANFPANVMEVIQRQNFTDPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPA 148

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + + CI GG     + 
Sbjct: 149 IVHINHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYGRACRLKSTCIYGGAPKGPQI 207

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 208 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 267

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ K+ V +NI + E   + +I     +    ++D+ ++ 
Sbjct: 268 DRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIR 327

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 328 LMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 387

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 388 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 447

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 448 QVSDLISVLREANQAI 463


>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
          Length = 692

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 43  EVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLADG 101

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 102 DGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 161

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 162 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 221

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V V +   +    D++   V++    +   ++ IL  Y    + I
Sbjct: 222 PRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSTI 281

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 282 IFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGL 341

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ V
Sbjct: 342 DVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAGV 401

Query: 369 WEPAP 373
             P P
Sbjct: 402 PVPEP 406


>gi|319788359|ref|YP_004147834.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466871|gb|ADV28603.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 579

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 196/354 (55%), Gaps = 21/354 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++   L   G+   T +Q   L   LR  DV   AQTG+GKT+AF +A+ + LL
Sbjct: 15  FDLHPELLA-GLESAGFTRCTPIQALTLPVALRGGDVAGQAQTGTGKTLAFLVAVMNRLL 73

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA A      P AL +APTRELA+Q+ ++     ++ G+  A+  GGV   ++
Sbjct: 74  TR-----PALAERKPEDPRALILAPTRELAIQIHKDAVKFGSQLGLRFALVYGGVDYDKQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   
Sbjct: 129 RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDIRFLLRRM 188

Query: 177 P--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P   +R+ L+FSAT+S  +  LA  +  +  ++ + +E    + +  R  L   SD +  
Sbjct: 189 PVRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQR--LYYPSDEEKL 246

Query: 235 IVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +    R  GA+  +VF +T+  V R  + L +  ++V  LSG++ Q++R   L   +
Sbjct: 247 PLLLGLLSRSEGART-MVFVNTKVFVERVARALEKAGYRVGVLSGDVPQKKRETLLNRFQ 305

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            G+  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 306 KGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 359


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V + +A  ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEIKLAV-SKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQ 353


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 205 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 264

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 265 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 324

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 325 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 384

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 385 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 444

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 445 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 504

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 505 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 552


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 295 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 354

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 355 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYSIRQIV 414

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 415 QGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 474

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 475 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 534

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 535 ILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 594

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P++    A
Sbjct: 595 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPESDNHLA 654

Query: 357 ERLFR 361
           + L +
Sbjct: 655 QPLVK 659


>gi|238892385|ref|YP_002917119.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae NTUH-K2044]
 gi|238544701|dbj|BAH61052.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 421

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PAVI-EALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRQVNQPRALIMAPTRELAVQIHADAEPLALATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|269861020|ref|XP_002650226.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
 gi|220066356|gb|EED43841.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
          Length = 443

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 11/360 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+ + T +Q       L  +D++  A TGSGKT +F L  A    A+         P+ 
Sbjct: 46  KGWEHPTPIQSQGWPMALSGRDMIGIAATGSGKTFSF-LVPAYIHAADQPSLREGDGPIV 104

Query: 78  LAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           + +APTRELA Q+G    EL  L     +      GG ++  +++ L NG  I++ TPGR
Sbjct: 105 IVLAPTRELATQIGNVATELSQLKIFNHLKPLCVYGGANIFPQKKALVNGIEILIATPGR 164

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D        ++    +VLDEAD MLD+GF   +  I+      R+ LM+SAT    + 
Sbjct: 165 LIDLHNQGFCPLNRCTFLVLDEADRMLDMGFEPQLNQIIPKINSHRQTLMWSATWPKEVK 224

Query: 195 TLAKNY-QKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +LA  Y  +DA++V +  E  + +  I+ R  +V+ +D++  ++  L+       ++FC+
Sbjct: 225 SLAYRYTSQDAIQVTVGDEELKVNEKIEQRVEIVSNNDKEKKLLYTLQDFRDARVLIFCN 284

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +++  +  + L E+ F+ VAL G+ SQ  R       + GR  + IATDVAARG+D+ D
Sbjct: 285 KKSTCDKLERFLLENRFRGVALHGDKSQHVRDVIFDNFKKGRDPILIATDVAARGLDVKD 344

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGR---KGMSVFVIPQN--MQRRAERLFREANVSV 367
           + LVI+ +L +N E+ +HR GRT R      K ++ F + ++  + +R   L ++ NV++
Sbjct: 345 IHLVINYDLPTNLEDYVHRVGRTARGTAKEGKALTFFSLEEDSGLAKRFIELLKKGNVTI 404


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 190/366 (51%), Gaps = 20/366 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------ 72
           GY   T VQ+  +      +D++  AQTGSGKT  F   + S    +     P       
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGM 247

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P  L +APTREL  Q+  E      ++ V      GG  +  + R +  G  
Sbjct: 248 GYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRM 182
           ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I++    +S ++R+ 
Sbjct: 308 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  + V V  S++ + +++IL   
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTL 427

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +   ++F  T+      T  L    F   ++ G+ +Q+ER  AL++ R GR  + +AT
Sbjct: 428 PPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVAT 487

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
            VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G +V    +N +  A+    
Sbjct: 488 AVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIE 547

Query: 359 LFREAN 364
           L +EAN
Sbjct: 548 LLQEAN 553


>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 408

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 185/340 (54%), Gaps = 4/340 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A ++ G+   T++QE ++   L  +D+L SA TG+GKT AF L  A   L +  R  
Sbjct: 12  LCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLP-ACQFLLDYPRKQ 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +  + L + PTRELA+QV  +   +   T +V  V  GG++   ++  L     I+V 
Sbjct: 71  PGATRI-LILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETLSKNLDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  +++ L+FSAT+ 
Sbjct: 130 TPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQNLLFSATLE 189

Query: 191 -PAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              + T A +   +   V      ++ + I  +  +   ++ +   +VNIL+     +A+
Sbjct: 190 GKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQALLVNILKQETTTSAV 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  +      LA    QV  L GE+ Q +R+ A+   ++G   + +ATDVAARGI
Sbjct: 250 VFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPILLATDVAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P++  VI+ ++    +  +HR GRTGRAG KG ++ ++
Sbjct: 310 DVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLV 349


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 145 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 204

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 205 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 264

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 265 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 324

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 325 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 384

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 385 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 444

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 445 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 492


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 143 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 201

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 202 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGKSSRIRNTCVYGGVPKGPQTRDLSRGV 260

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 261 EVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 320

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I +   I+ 
Sbjct: 321 SATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIKHLEKIME 380

Query: 241 YHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              ++N I +F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 381 DKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 440

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 441 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQARDL 500


>gi|296804908|ref|XP_002843302.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
 gi|238845904|gb|EEQ35566.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
          Length = 578

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 208/382 (54%), Gaps = 23/382 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 105 KAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 162

Query: 73  SAPL------ALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +  +      AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  
Sbjct: 163 NGMIFQLGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNK 219

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RR 181
           G ++++GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK  R+
Sbjct: 220 GVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQ 279

Query: 182 MLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVN 237
            ++FSAT +  +  LA+ + +   + +N+    ++HS +D      ++     R   + +
Sbjct: 280 TMLFSATQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFS 338

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +     
Sbjct: 339 FLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGT 398

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRA 356
            I TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  + Q  +   
Sbjct: 399 LICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFL-QPSEVGF 457

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
               REA V VV    P+   I
Sbjct: 458 INHLREARVPVVEFEFPTKHII 479


>gi|50305859|ref|XP_452890.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660559|sp|Q6CT49|PRP28_KLULA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49642023|emb|CAH01741.1| KLLA0C15433p [Kluyveromyces lactis]
          Length = 539

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPLA 77
           Y   TS+Q + +   +  +D +  A TGSGKT+AF L +   L  +   +  +    PLA
Sbjct: 158 YNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDGPLA 217

Query: 78  LAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           L +APTRELA Q+   G+ +  L+ +   +V++ +GG S+     +L++G  I+V TPGR
Sbjct: 218 LVLAPTRELAQQIQHEGQSITKLWKRPCNIVSI-VGGHSLEEISANLRDGCDILVATPGR 276

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPA 192
           L D +    L +  +  +VLDEAD+M+D GF D +  IL  +     R+ +MF+AT SP 
Sbjct: 277 LLDCLDSHLLFLKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISNRQTMMFTATFSPT 336

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNAI 248
           I  +A  Y K    V +  E    S    + ++  + D +      + + L  + A   I
Sbjct: 337 IEKVANGYLKKPSYVTVGGE---ESKPKIKQIVRYVPDEEEKLKILVKDFLPNYKAP-II 392

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F + + +       L E  F+   L G  SQ++R ++L ++R+G+  + IATDVA RGI
Sbjct: 393 IFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILIATDVAGRGI 452

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           D+P++ LV++ +   + ++ +HR GRTGRAG+ G ++ F+  +       +LF
Sbjct: 453 DIPNVSLVVNLQFPKSFDSFVHRVGRTGRAGKTGTALTFLTEEEDHSAMAKLF 505


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 176/340 (51%), Gaps = 14/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  L   L ++D++  AQTGSGKT AF + +   +  +     P+ +     
Sbjct: 52  YSKPTPVQKHALPIILSKRDLMACAQTGSGKTAAFLIPILDLVFQQGCPRPPSDSRYSGR 111

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELAVQ+  E      ++ V   V  GG  +  + RDL++G H++V 
Sbjct: 112 RKQYPTALVLGPTRELAVQIFEEARKFSYRSRVRPCVVYGGADIGAQMRDLEHGCHLLVA 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFS 186
           TPGRL D +    + +  ++ +VLDEAD MLD+GF   I  I+  D  PK   R+ LMFS
Sbjct: 172 TPGRLVDMMERGKIGLDGVRYLVLDEADRMLDMGFEPQIRRIVEQDVMPKTGDRQTLMFS 231

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+++  D + + +        +I  + V V   D+ + ++++L       
Sbjct: 232 ATFPKEIQMLARDFLHDYIFLAVGRVGSTSQNITQKVVWVDECDKRSFLLDLLNASAPDT 291

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ +       L    +    + G+ +Q ER  AL   R  R  + +AT VAA
Sbjct: 292 LTLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGEREQALHSFRTARMPILVATAVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           R +D+P+++ V++ ++ ++ E  +HR GRTG+ G  G++ 
Sbjct: 352 RSLDIPNVKHVVNFDMPADIEEYVHRIGRTGKVGNLGLAT 391


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 184/362 (50%), Gaps = 29/362 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76
           GY + + +Q A +   L+ +D++  A TGSGKT AF L L + +  L      +      
Sbjct: 309 GYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLTYIQDLPPLTEINKNDGAY 368

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL +APTREL  Q+  E        G  V   +GG S+  +   L  GA I+V TPGRL 
Sbjct: 369 ALILAPTRELVQQIETEAHKFADPLGFNVVSIVGGHSLEEQVHALSRGAEIIVATPGRLV 428

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------------- 177
           D I  + L +S    V++DEAD M+DLGF + +  ILD+ P                   
Sbjct: 429 DCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEKPDTDDAENAQLMQK 488

Query: 178 ------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                 + R+ +M++AT+ P +  +A+ Y +    V I +       ++ R   V+  D+
Sbjct: 489 YLGATDRYRQTMMYTATMPPTVEKIARKYLRRPAIVTIGNAGEAVETVEQRVEFVSGEDK 548

Query: 232 DNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
               +  +   G  A   IVF + + +     + +    +  V L G  +Q++R  AL  
Sbjct: 549 KKKRLQEILGAGDFAPPIIVFVNIKRNCDAVARDVQRMGYSAVTLHGSKTQEQREAALAS 608

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R+G+ +V +ATD+A RGID+PD+ LVI+  +++N E+  HR GRTGRAG+ G+++  + 
Sbjct: 609 VRNGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIESYTHRIGRTGRAGKSGVAITFLE 668

Query: 350 QN 351
           Q+
Sbjct: 669 QS 670


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D +  AQ+G+GKT  F + +   +  ++          AL ++PTRELA+Q+   ++ L
Sbjct: 64  RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQ------ALILSPTRELAIQIQNVVKHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +    CIGG +V  + + LQ G  IV GTPGR+ D I+ + L   ++K ++LDEA
Sbjct: 118 GDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE+   GF++ I  I    P   ++++ SAT+   +  +   +  D V++ +  +    S
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    V     D + + + ++        A++FC+T+  V+     + +  F VVA+ G
Sbjct: 238 GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q ER + +   R G +RV I+TDV ARGID+  + LVI+ +L ++ EN +HR GR+G
Sbjct: 298 DMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQN 351
           R GRKG ++ +I ++
Sbjct: 358 RFGRKGTAINLITKD 372


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 197/372 (52%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           TDVA+R  G+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E
Sbjct: 396 TDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 455

Query: 358 --RLFREANVSV 367
             ++  EAN ++
Sbjct: 456 LIKVLEEANQAI 467


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 179/340 (52%), Gaps = 5/340 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q A +   L+ KD++  AQTG+GKT AF L L   L +E     P     AL 
Sbjct: 24  YKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPLIQQL-SERSGKPPGRRVRALI 82

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA Q+   +        +  AV  GGV    + ++L  G  I+V TPGRL DH+
Sbjct: 83  LSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELAGGLDILVATPGRLIDHL 142

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
             + +++  ++ ++LDEAD MLD+GF   ++ I+   P+KR   MFSAT+   I  LA+ 
Sbjct: 143 ERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRHTQMFSATMPDNIRQLAQT 202

Query: 200 Y--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRAS 256
              + + VRV+  S      +  +  ++ + S++    + +L+        ++F  TR  
Sbjct: 203 LLQKPETVRVSPPSSTADRVE-QFLCMVGSQSEKRLLTLELLKQQELPGRTLIFTRTRHG 261

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R    L+   +   A+ G+ SQ  R   L+  R G+  V +ATD+AARGID+ D+ LV
Sbjct: 262 ADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLVATDIAARGIDVKDVRLV 321

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           I+ +L   PE  +HR GRT RAG  G ++ +      R+A
Sbjct: 322 INYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKA 361


>gi|19387225|gb|AAL87143.1|AF479824_1 DEAD box RNA helicase Vasa [Melanotaenia fluviatilis]
          Length = 400

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/314 (35%), Positives = 171/314 (54%), Gaps = 10/314 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+A+      FS    P A+ +APTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQQLMADGVAASHFSDIQEPEAIIVAPTRELINQIFLEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GGVS   + R++  G ++V GTPGRL D I RGK + +S L+ +VLDE
Sbjct: 61  SYGTCVRPVVVYGGVSTGHQIREISRGCNVVCGTPGRLLDLIGRGK-IGLSKLRYLVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS 211
           AD MLD+GF  D+  ++ S    S + R+ LMFSAT    I  +A ++ K D + + +  
Sbjct: 120 ADRMLDMGFAPDMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMAADFMKADYLFLAVGI 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                +D++   + V    +   ++ +L+  G +  +VF  T+         L +     
Sbjct: 180 VGGACTDVEQTFIQVTKFSKREQLLELLKTTGMERTMVFVETKRQADFIAVFLCQEKVST 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR
Sbjct: 240 TSIHGDREQREREQALGDFRSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHR 299

Query: 332 SGRTGRAGRKGMSV 345
            GRTGR G  G ++
Sbjct: 300 IGRTGRCGNTGRAI 313


>gi|323355122|gb|EGA86952.1| Dbp3p [Saccharomyces cerevisiae VL3]
          Length = 537

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   S L+ +  +         L I+PTRELA Q+   L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNL 202

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+  + +VV TPGRL D ++   +++S +  +VL
Sbjct: 203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  LA  +  + ++V+I + +
Sbjct: 262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIVFCSTRASVSRFTKVLAE 266
           +  ++     ++  +  R  +  ++ +L+ YH      +  ++F   +   +R  + L  
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 382 NGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 442 DYVHRIGRTGRAGQTGTA 459


>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
 gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 171/338 (50%), Gaps = 12/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +SVQ++ + P L+ +DV+  A TGSGKT AF L +   L  +           AL
Sbjct: 21  GFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPVVHVLSVD------PHGVFAL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+  +         +   V IGG  + R+   L    HIVV TPGRL +H
Sbjct: 75  CLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQASSLSKRPHIVVATPGRLLEH 134

Query: 139 IRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
                  I     LK ++LDEAD +LD  F  ++ ++L + P+KR+ LMFSATI+P++  
Sbjct: 135 FMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTNLPQKRQTLMFSATITPSVIA 194

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCS 252
           L     + A       E    +        +    +D  +V++LR      +  A++FC 
Sbjct: 195 LKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYLVHVLRELVSSKSTRAMIFCP 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T       + +L        +L     Q++R + L   +    ++ +ATDVAARG+DLPD
Sbjct: 255 TVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKSTMVKILVATDVAARGLDLPD 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ELV++ ++ S+P   +HR GRT R    G ++ ++ Q
Sbjct: 315 VELVVNYDIPSDPRQYIHRIGRTARFHATGQAISLVTQ 352


>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 187/348 (53%), Gaps = 13/348 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+I   P +IG +L      + + +Q+A +   L  +D++  A+TGSGKT AF L +  
Sbjct: 35  FESIGLRPWLIG-SLKSISIRHPSEIQQACIPHILNGRDIIGGAKTGSGKTAAFALPILQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D +       AL + P RELA Q+  +   L     + ++V +GG+ +  +  +
Sbjct: 94  KL--SEDPY----GVFALVLTPARELAFQIAEQFRVLGTGINLKLSVVVGGMDMMSQALE 147

Query: 121 LQNGAHIVVGTPGRLCDHIRG--KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           L    H+++ TPGRL DHIR     ++   ++ +V+DEAD +LD  F DD+E IL   P+
Sbjct: 148 LSQKPHVIIATPGRLVDHIRSSSNAIHFKRIRFLVMDEADRLLDDTFSDDLEGILSQLPQ 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+F+AT++  I  L  + +        A        +D + +LV+ + RD  + +I
Sbjct: 208 KRQTLLFTATMTDEIKELQMSSKTLPFVYECAERYSTVEKLDQQYILVSSNVRDAYLAHI 267

Query: 239 LRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +R     K  I+F S   +      +L E   +  AL  ++ Q +R  +L   + G   +
Sbjct: 268 VRESLSGKTMIIFASKCRTCETLRIMLKELGLKSTALHAQMPQNDRLGSLAKFKSGIVPI 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            IATDV +RG+D+P +++VI+ EL ++  + +HR GRT RAG+ GMS+
Sbjct: 328 LIATDVGSRGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSL 375


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 12/360 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I   +++ G+   T +Q       L  +DV+  AQTGSGKT +F L     ++A+
Sbjct: 98  NVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAVIHIMAQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
             R      P+ L + PTRELA QV    +E    +A    + A+C  GG +   + R++
Sbjct: 158 -PRLLRNEGPICLILVPTRELAQQVLVVAKE----FADAASLRAMCFYGGSAKGTQLREM 212

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I + TPGRL D IR +   +S +  +VLDEAD MLD+GF   I  I+  +   R+
Sbjct: 213 QKGGEICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDRQ 272

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL 239
            LM+SAT    + TLA+ +  D ++VNI S +  H++ +   ++  + D  ++  ++ +L
Sbjct: 273 TLMWSATWPREVQTLAREFLTDYIQVNIGSVSL-HANPNITQIVEIMDDWSKEQRLIELL 331

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    +VF  T+    + T  L    F V A+ G   Q++R   L   + GR  + +
Sbjct: 332 TSFGRARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILV 391

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ ++E V++ +  +  E+ +HR GRT R+ + G +         R+A  L
Sbjct: 392 ATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARDL 451


>gi|227540102|ref|ZP_03970151.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239963|gb|EEI89978.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 406

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 11/374 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E L   GY++ T +Q   +   L++KD++  AQTG+GKT ++ L +   +       
Sbjct: 11  LLEEGLDSMGYLDATPIQGQAIPVILQDKDLIACAQTGTGKTASYLLPILHKIEVRKSEH 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAH 126
                   L +APTRELA+Q+ +++  L   TG       GG   +   +++R ++ G +
Sbjct: 71  VNT-----LILAPTRELALQIDQQIMGLAYFTGATSIAVYGGGDGMGYEQQKRAIREGVN 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL  H+     + S L+ ++LDEAD MLD+GF +DI  I+   P KR+ L+FS
Sbjct: 126 IIVATPGRLIAHMTSGKFDFSKLEHLILDEADRMLDMGFYEDILRIISYLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I +LAK    D   +NIA  ++    I  +A LV    +   I  IL      +
Sbjct: 186 ATMPPKIRSLAKQILHDPTEINIAI-SKPSDGIKQQAYLVYDEQKTELIKTILSDDSYSS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F S +  V R T  L +      A   +L Q +R   +   +  R  V + TDV +R
Sbjct: 245 VIIFASKKEIVKRLTHELQKKGIAAEAFHSDLEQTQREEVMNKFKGKRLSVLVGTDVISR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LVI+ ++  +PE+ +HR GRT RA   G ++  I    Q R  R+  EA + 
Sbjct: 305 GIDVVGISLVINYDVPPDPEDYVHRVGRTARAATTGTAITFINTKDQNRFGRI--EALIG 362

Query: 367 VVWEPAPSVEAIRE 380
              E  P  E   E
Sbjct: 363 NEIEKVPLPEGFSE 376


>gi|254505518|ref|ZP_05117665.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551635|gb|EED28613.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 412

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 180/342 (52%), Gaps = 9/342 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ +AL +   V  T +Q  ++   L EKDVL  A TGSGKT+A+ L L   LL   
Sbjct: 9   VPKLV-QALPQ-NVVKPTDIQALVIPQMLAEKDVLAQANTGSGKTLAYLLPLLQRLLPNP 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D         AL + PTRELA QV   +  +    G+   V  GGV   +++  L    +
Sbjct: 67  DH-------QALVLVPTRELAFQVNDSVGEITQPLGLSSVVLCGGVDKAQQQAKLAKRPN 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ T GRL D +  + L++  +K ++LDEAD +LD+GF  D++ I +  P +R+  MFS
Sbjct: 120 ILIATTGRLLDLLSAEELSLKRVKTLILDEADRLLDMGFWPDVQAIAEKLPAQRQTAMFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S A+   A       V +    EN  + DI     LV    +  A++ +++ +    
Sbjct: 180 ATFSDALKQKATALMSAPVALTAHQENSTNKDIAETLYLVNKGSKAKALIELIKQNHWSQ 239

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF   + +     K L +      AL G  SQ ER   L   + G+ +V IATD+ AR
Sbjct: 240 ALVFIGAKENADSLAKKLNKAAITTSALHGNKSQSEREETLAQFKSGQTQVLIATDLLAR 299

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++
Sbjct: 300 GIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLV 341


>gi|126208042|ref|YP_001053267.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           L20]
 gi|126096834|gb|ABN73662.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 406

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 182/334 (54%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L  +D+   AQT +GKT+AF +A+   LL  ND  +  +
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTRTGKTLAFLIAVFHYLLT-NDSVTNKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +R  ++FSAT+S 
Sbjct: 141 RVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTMLFSATLSA 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 RVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 354


>gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502]
 gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis]
          Length = 441

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 186/339 (54%), Gaps = 9/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +   LL +        
Sbjct: 42  ACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQRLLDDQ------- 94

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   L    HI+V +P
Sbjct: 95  VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKPHIIVASP 154

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG NI  +K +V+DEAD +L + F   +  I++SSPK R   +FSAT++ 
Sbjct: 155 GRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPKNRTTYLFSATMTT 214

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L K    + +++ + ++    +++    + +    + +  + +L+  G    I+FC
Sbjct: 215 KVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGLLQNLGQYTGIIFC 274

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+   T+V +RG+D+P
Sbjct: 275 NTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLFTTEVGSRGLDIP 334

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 335 HVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQ 373


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 186/361 (51%), Gaps = 22/361 (6%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  A   +   
Sbjct: 824  FPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLP-AIVHINAQ 882

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 883  PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLARGV 941

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 942  EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 1001

Query: 186  SATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            SAT    +  LA +YQ D ++VN+ S      +R    +++   +  +SD++N I     
Sbjct: 1002 SATWPKEVRQLASDYQNDWIQVNLGSMDLSAHHRIQQIVEHLETI--MSDKENKI----- 1054

Query: 241  YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 1055 -------LIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVA 1107

Query: 301  TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
            TDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG  G ++ +      ++A  L 
Sbjct: 1108 TDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENSKQARDLV 1167

Query: 361  R 361
            +
Sbjct: 1168 Q 1168


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 197/357 (55%), Gaps = 18/357 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q       L+  DV+  A+TGSGKT AFG+   S +L +N +         L I+PT
Sbjct: 116 TTIQAVSWPYLLKGNDVIGVAETGSGKTFAFGVPAISHVLQKNSK-----GLQVLVISPT 170

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELAVQ+   L+ L    G+      GGVS   +RR ++  +  V+ TPGRL D +    
Sbjct: 171 RELAVQIYDNLKQLTDLCGLECCCIYGGVSKDDQRRQVKQ-SQCVIATPGRLLDLMEEGS 229

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           ++++ +  +VLDEAD ML+ GF + I+ I+ +    R+ LMF+AT    +  LA ++ K 
Sbjct: 230 IDLTGINYLVLDEADRMLEKGFEEAIKSIMANVNTDRQTLMFTATWPKEVRELASHFMKS 289

Query: 204 AVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN--AIVFCSTRASVSR 259
            V+V +   +   ++     ++  +   D++  ++ +L  +   +   ++F   +   +R
Sbjct: 290 PVKVTVGDRDELSANKKITQIVEVIDPYDKEKKLLQLLSKYSKNDDKILIFALYKKEATR 349

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L    ++V A+ G+LSQQ+R+ +L   + G++ + +ATDVAARG+D+P++++VI+ 
Sbjct: 350 VERTLNYKGYKVSAIHGDLSQQQRTQSLNDFKTGKSSLLLATDVAARGLDIPNVKVVINL 409

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA---ERLFREANVSVVWEPAP 373
                 E+ +HR GRTGRAG+ G++  +  ++ +  +   + + R AN     +P P
Sbjct: 410 TFPLTVEDYVHRIGRTGRAGKTGIAHTLFTEHEKHLSGALQNILRGAN-----QPVP 461


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 197/372 (52%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           TDVA+R  G+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E
Sbjct: 396 TDVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 455

Query: 358 --RLFREANVSV 367
             ++  EAN ++
Sbjct: 456 LIKVLEEANQAI 467


>gi|222111864|ref|YP_002554128.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221731308|gb|ACM34128.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 616

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 196/386 (50%), Gaps = 50/386 (12%)

Query: 8   PQVIGEALSERGYVNLTSVQEAIL------NPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           P+++ +A+++ GY   T VQ   +        D    D++VS+QTGSGKT AF L +  T
Sbjct: 46  PELV-QAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAFLLPVLHT 104

Query: 62  LLAEN-----------------------------DRFSP-------ASAPLALAIAPTRE 85
           L+ +                               R +P       A+ P AL + PTRE
Sbjct: 105 LIRQQAEAEVAERAAFERAAAEAAARGEAPPKRPKRKNPTQARNFKAATPGALVLCPTRE 164

Query: 86  LAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           LA QV  + ++ +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R + +
Sbjct: 165 LAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSQQI 223

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD- 203
            +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     D 
Sbjct: 224 KLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFSATFAPRIQQLAMRVMHDN 283

Query: 204 ---AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259
                ++ I +   +H++I         +     +++  LR      AIVF ST+     
Sbjct: 284 GASVKKIQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIDQAIVFASTQVECDG 343

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 344 LANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFNF 403

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
            L    E+  HR GRTGRAGR G++V
Sbjct: 404 GLPMKAEDYTHRIGRTGRAGRDGLAV 429


>gi|50365342|ref|YP_053767.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
 gi|50363898|gb|AAT75883.1| ATP-dependent RNA helicase [Mesoplasma florum L1]
          Length = 666

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 195/354 (55%), Gaps = 9/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  +   T +Q   +   L  K++   + TG+GKT +F L +   +     R     
Sbjct: 15  ALEKANFNEATEIQARAIPLFLEGKNIFGKSSTGTGKTASFVLPILEKIEPNKRRVQ--- 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              A+ +APTRELA+Q+  ++    ++   +V+A  IGG  +  + + L++ + IVVGTP
Sbjct: 72  ---AVIMAPTRELAMQIVNQIRIFGSRIENLVIAPLIGGADMRDQIKRLKD-SQIVVGTP 127

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH+  K L +  ++ ++LDEADEML +GF+++I+ + +      ++ +FSAT SP 
Sbjct: 128 GRVNDHLNRKTLKLDDVRTIILDEADEMLKMGFKNEIDALFERVSPDVQIGLFSATTSPK 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  +A +Y  +   + I ++   +++I    +      +++ IV + + H  K AIVF +
Sbjct: 188 VMQIANDYMNEYDVIEIENQIEVNANITNTFIFTKGFSKEDLIVKVFKKHKPKRAIVFSN 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +    L     + + ++G+  Q +RS A+   R+    V +ATDV ARGID+  
Sbjct: 248 TKNHTDKIADNLEAAGIRAIVINGDKRQSQRSRAIAKFRNNEISVLVATDVVARGIDITG 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANV 365
           ++ VI+ ++S   E+ +HR GRTGR   KG S+ FV  QN+ R+ + + +  N+
Sbjct: 308 VDYVINYDVSMEDEHFVHRIGRTGRNNTKGDSITFVQNQNVLRQIKGIEKNFNL 361


>gi|300858427|ref|YP_003783410.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685881|gb|ADK28803.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206138|gb|ADL10480.1| Putative superfamily II DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330695|gb|ADL20889.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 435

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 194/385 (50%), Gaps = 17/385 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G      +QEA +   L+ +DVL    TGSGKT  FGL + + L A+     P   
Sbjct: 2   LNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAAL-AKTGASLPGH- 59

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV   L+   A  G+ +   +GGVS++R          I+V TPGR
Sbjct: 60  PRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAAPVDILVATPGR 119

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             D +  K L +  +    LDEAD+M D+GF   +  +L+ +P+  + L+FSAT+   + 
Sbjct: 120 AQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRLLFSATLDGDVN 179

Query: 195 TLAKNYQKDAV-----RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAI 248
            L + +  D V      V  A +   H    YR   + + DRD+    +LR  G     I
Sbjct: 180 KLVERFMHDPVTHSTAEVAAAVDTMTH----YR---LHVGDRDSRNDVVLRIAGRIGKTI 232

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+  V R  K L       V + G+  Q  R+NA+    DG   V +ATD+AARGI
Sbjct: 233 MFMRTKHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVATDIAARGI 292

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV- 367
           D+ D++LV+H +  +  +  LHR+GRT RAG  G  V ++ +   +  + L  +A V+  
Sbjct: 293 DIGDVDLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTLLHKAGVNAE 352

Query: 368 -VWEPAPSVEAIRERDAQRILQDPL 391
            +   A S E +    AQ+I  +PL
Sbjct: 353 SLEVSANSPELVHITGAQKITGEPL 377


>gi|294630176|ref|ZP_06708736.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833509|gb|EFF91858.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 510

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L   
Sbjct: 98  GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARLAGG 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 158 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGV 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 215 DVLVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQIPAGGQRMLF 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+TL K Y  D V   + S     + + +  ++V   D+      I    G  
Sbjct: 275 SATMENEISTLVKRYLSDPVTHEVDSAQGNVTTMSHHILIVKPKDKAPVTAAIASRKG-- 332

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 333 RTIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 392

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 393 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 452


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score =  180 bits (457), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 177/349 (50%), Gaps = 3/349 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   L   L  +D++  A+TGSGKT AF L  A   + +         P+ L 
Sbjct: 126 YTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAF-LWPALVHIMDQPELQVGDGPIVLI 184

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
            APTREL  Q+  E         + V    GG + + + + LQ GA IVV TPGRL DH+
Sbjct: 185 CAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAEIVVATPGRLIDHV 244

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I ++    R+ L+FSAT    +  L ++
Sbjct: 245 KAKATNLHRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQTLLFSATFKKKVEHLCRD 304

Query: 200 YQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASV 257
              D VRV I      + D+     +  ++  +   +  N++ +  A + ++F + + + 
Sbjct: 305 ILVDPVRVVIGELGEANEDVTQIVHIFNSMPSKWEWLTQNLVSFASAGSVLIFVTKKLNS 364

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L ++ F+V  L G++ Q ERS  L   +     + +ATDVAARG+D+P ++ VI
Sbjct: 365 EELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVATDVAARGLDIPSIKTVI 424

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           + +++ +     HR GRTGRAG KG +  ++ Q+ Q  A  L R   ++
Sbjct: 425 NYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSDQNFAGDLVRNLEIA 473


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 184/355 (51%), Gaps = 17/355 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            IP  +  AL  +G    T +Q   +      +D++  + TGSGKT++F + L    L +
Sbjct: 216 KIPACLISALKRKGINIPTPIQMQGIPAAFTGRDMIGISFTGSGKTLSFSIPLIMAALEQ 275

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRE 117
                F     P +L I P+RELA Q G ELE+L         + + VAV IGG +V   
Sbjct: 276 EIEMPFVRDEGPFSLVICPSRELAKQTGHELEYLADHLDAGGFSKLRVAVAIGGTAVKET 335

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ G H++VGTPGRL D ++   +++   K +VLDEAD M+D+GF +D+ FIL    
Sbjct: 336 MDVVKKGVHVLVGTPGRLMDMLQKGMIHLETCKQLVLDEADRMVDMGFEEDVRFILSYFK 395

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDN 233
            +R+ L++SAT+   I   AK+   D + VN+    A+      DI+Y      L +   
Sbjct: 396 SQRQTLLYSATMPMKIKDFAKSALVDPLTVNVGRAGAASLNIRQDIEY-----VLDEAKV 450

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             V  +    +   ++F   + +V +  + L     +  A+ G   Q++R  A +  R G
Sbjct: 451 VTVLQMLQKTSPPVLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQEDRMEACRQFRGG 510

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATD+A++G+D P++E VI+ ++  + EN +HR GRTGR   +G++   +
Sbjct: 511 EKDVLVATDIASKGLDFPEIEHVINYDMPEDIENYIHRIGRTGRGNHQGVATTFV 565


>gi|294140728|ref|YP_003556706.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293327197|dbj|BAJ01928.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 448

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 6/340 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72
           +L+E GY + T +Q   +   L+ K+++ +AQTGSGKT  F L +   L   EN R    
Sbjct: 15  SLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPMLEMLARGENQRKKRI 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
            A   L + PTRELAVQV   +E  Y K   + A+ + GGV    +++ L  G  IVV T
Sbjct: 75  RA---LILTPTRELAVQVCTSIE-AYGKYLNLKALAVYGGVDYGPQKQALIEGIDIVVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P+ R+ L+FSAT+S 
Sbjct: 131 PGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDRQNLLFSATLSR 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LAK    +A+++++  ++    +ID   V V    +   + ++++ +    A++F 
Sbjct: 191 QVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKDKKSALLSHLIKENSWPQALIFI 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L +   +   +    +Q  R   L   + G+ +  I+T ++ARGID+ 
Sbjct: 251 ETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYLISTGISARGIDID 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DL LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++
Sbjct: 311 DLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKD 350


>gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 421

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLTQATGLKIGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|238897679|ref|YP_002923358.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465436|gb|ACQ67210.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 454

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 199/378 (52%), Gaps = 12/378 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++GY++ T++Q  ++   +  +D+L SA TG+GKT+AF L  A   L +  +  P  
Sbjct: 18  ALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAF-LIPALQHLIDFPKKKPGP 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L +APTRELA+QV  +   L   T + VA   GGV+             I+V T G
Sbjct: 77  -PRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHTEIFSTNQDILVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SPA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+ S  
Sbjct: 136 RLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRWRKQTLLFSATLESAT 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   ++   +D + +  A   R+   I    YR+    L  +   +  +L+    + +I+
Sbjct: 196 IREFSERVLRDPIYLEAAPSVRERKKILQSYYRS--DNLPHKIALLCYLLKTPSVQKSII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  V      L         L GE+ Q +R+ A+  +  GR +V +ATDVA+RG+D
Sbjct: 254 FVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVATDVASRGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA-NV 365
           + D+  V + ++    +  LHR GRT RAGRKG ++ +I  +   + ++ ER  ++    
Sbjct: 314 IEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVERYLKKTIKP 373

Query: 366 SVVWEPAPSVEAIRERDA 383
            VV E  P+ +A  E+ A
Sbjct: 374 RVVDELRPTTKAPNEKKA 391


>gi|209695626|ref|YP_002263555.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
 gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
          Length = 398

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 175/335 (52%), Gaps = 1/335 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L +   L  E  +  
Sbjct: 12  ILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPILQMLSEEQTKVR 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELAVQV   +        +      GGV    +++ L  G  I+V 
Sbjct: 72  -AKRIRALILTPTRELAVQVEDNISKYSKHLDLTSLAMYGGVDYKEQKQRLIEGVDILVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+S
Sbjct: 131 TPGRLLDMYTQRAVHFDEIDILVLDEADRMLDMGFIEDINKIIERLPLERQNLLFSATLS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LA+    + + + I   +     ID   + V    +   I ++++ +    A++F
Sbjct: 191 EQVRALARTAINNPIEITIERNSNAEPKIDQWLITVDKDKKSALISHLIKENDWDQALIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  RS  L   ++GR +  +AT +AARGID+
Sbjct: 251 IETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRLKYLVATGIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L  VI+ +L    E+ +HR GRTGRAG  G ++
Sbjct: 311 DELTRVINYDLPFPAEDYVHRIGRTGRAGSSGEAI 345


>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 448

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 186/340 (54%), Gaps = 15/340 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAE 65
           I +++   G+   T +Q   +   +  +D+L S++TGSGKT+A+ L           L++
Sbjct: 12  ILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPALHRVYKKKALSK 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P  + + PTRELA QV  +L  L A +     +  GG + + + + LQ   
Sbjct: 72  RD-------PRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSLQKDP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-SSPKKRRMLM 184
           H +V TPGRL DH++ + + +  L+ +VLDEAD MLDLGF D +  I   +S ++R+ L 
Sbjct: 125 HFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQRQTLF 184

Query: 185 FSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
           FSAT+ +  I+ +A    ++  RV I     +H+DI    +L    D   A++ ++L   
Sbjct: 185 FSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKHLLVGQ 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K AIVF +T++   R ++++A       AL+G LSQ  R+  ++    G+  V ++TD
Sbjct: 245 TIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDVLVSTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           VA+RG+D+  +  V + +L    E  +HR+GRTGRAG KG
Sbjct: 305 VASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKG 344


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 198/384 (51%), Gaps = 24/384 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--------- 175
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D          
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDT 275

Query: 176 -----SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-S 229
                 P  R+ LM+SAT    +  LA+++ +D  ++N+ +     +    + V V + S
Sbjct: 276 LSLFPFPPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMES 335

Query: 230 DRDNAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           ++D+ ++ ++    A+     I+F  T+      T+ +    +  + + G+ SQ ER   
Sbjct: 336 EKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWV 395

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-V 345
           L   R G+A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  
Sbjct: 396 LNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYT 455

Query: 346 FVIPQNMQRRAE--RLFREANVSV 367
           F  P N+++  E  ++  EAN ++
Sbjct: 456 FFTPGNLKQARELIKVLEEANQAI 479


>gi|302791587|ref|XP_002977560.1| hypothetical protein SELMODRAFT_176291 [Selaginella moellendorffii]
 gi|300154930|gb|EFJ21564.1| hypothetical protein SELMODRAFT_176291 [Selaginella moellendorffii]
          Length = 440

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 189/341 (55%), Gaps = 17/341 (4%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIA 81
           +T VQEA L   L+ +DVL  A+TG+GKT+AF L    T+LA  +  +    P+ AL I 
Sbjct: 1   MTMVQEATLPLILKGEDVLAKAKTGTGKTIAFLLPTIETILASKNAQTYHENPIRALVIC 60

Query: 82  PTRELAVQVGRELEWL---YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           PTRELA+Q   E + L   + + G   A+  G  SV   ++       I+VGTPGRL DH
Sbjct: 61  PTRELAMQAAVEAQTLMKFHNELGAQTAIG-GNSSVMEAKKIKLQPCQILVGTPGRLLDH 119

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           I   RG    +  +K ++LDEAD +LD+GFR ++  IL + PKKR+ L+FSATI   + +
Sbjct: 120 IQNARGFADQLKSVKILILDEADTLLDMGFRQNLTEILKALPKKRQTLLFSATIPKEVHS 179

Query: 196 LAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA----KNAIV 249
           +++   K   +    +  +   H+ ++ +  +V    +   + +IL+ H A       +V
Sbjct: 180 ISQLALKPDHKFVDTVGQDTETHAMVNQKYAVVPQESQFAVLYSILKEHIAVEPKYKVLV 239

Query: 250 FCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT-DVAARG 307
           FC+T A+++ +   L + L F V  +    +Q  R+      R+ +  + + T DV+ARG
Sbjct: 240 FCTT-ANITAYMAALYQKLGFNVREIHSRKTQTYRTRVSDEFRNCKGGLIMFTSDVSARG 298

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID PD+ LV+   + +  E  +HR GRTGRAG++G  V ++
Sbjct: 299 IDYPDVTLVVQIGVPAAREQYIHRLGRTGRAGKEGQGVLIL 339


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 191/375 (50%), Gaps = 16/375 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L      
Sbjct: 97  ELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPS 156

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R
Sbjct: 157 PVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMR 216

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           ++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++     
Sbjct: 217 EVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMP 276

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ + +
Sbjct: 277 SVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSXL 336

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A
Sbjct: 337 LDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVA 396

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q  
Sbjct: 397 DILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNI 456

Query: 356 AERL---FREANVSV 367
            + L     EAN  V
Sbjct: 457 VKGLMEILNEANQEV 471


>gi|322828196|gb|EFZ32110.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 183/338 (54%), Gaps = 6/338 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F ++  P  I ++  + GY   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 69  MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E   +  +   +   C+ GG     +
Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+    ++V   D+   + 
Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L   L   V+A+ G+  Q +R   L   R    
Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR G
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIG 405


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 195/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS  G      +Q A L   L  +D+L   +TGSGKT+AFGL L   L   
Sbjct: 60  ELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPL---LTRT 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG+S+ R+  +L+ GA
Sbjct: 117 AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELRQGA 176

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  ++  VLDEAD+M DLGF   +  +LD   P  +RML 
Sbjct: 177 EVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQRML- 235

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L +    D V  ++       + +++  ++V   DR      I    G 
Sbjct: 236 FSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYAVTTEIAARDG- 294

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VA
Sbjct: 295 -RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVA 353

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A 
Sbjct: 354 ARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRMMAGAG 413

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           +       P+V  +R  +A+
Sbjct: 414 IE------PTVTRVRSGEAE 427


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 187/357 (52%), Gaps = 10/357 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + Q + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF L + + 
Sbjct: 216 FENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGSGKTAAFLLPIINV 275

Query: 62  LLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           LL++       +    P A+ ++PTREL +Q+  E       + +   V  GG + + + 
Sbjct: 276 LLSDPRDLILTAEHCEPHAIIVSPTRELTLQIYSEARKFAHGSIIKAVVTYGGTAAYHQA 335

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
           + +  G HI+V TPGRL D +    ++ + ++ VVLDEAD MLD+GF  DIE +++    
Sbjct: 336 QQVMKGCHILVATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGFMPDIEKMMNHPTM 395

Query: 178 ---KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ LM SAT    I  LA  +  D + V +       +D+D +   V   ++   
Sbjct: 396 VPTGERQTLMSSATFPEEIQRLAGKFLSDYLFVAVGIVGGACTDVDQKFYQVTRFEKRPK 455

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V +L+  G    +VF   + +       L+E  F   ++ G+  Q+ER  AL   + G+
Sbjct: 456 LVELLKEEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQ 515

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             + +AT VAARG+D+ ++  V++ +L  + +  +HR GRTGR G +G +  F  P+
Sbjct: 516 MTILVATAVAARGLDIKNVAHVVNYDLPKSIDEYVHRIGRTGRVGNRGKATSFYDPE 572


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 177/333 (53%), Gaps = 7/333 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L+  S +            P  L
Sbjct: 41  GFNKPSAVQQRAIVPVIQGRDVIVQSQSGTGKTAVFSLSALSMIDL------SIREPQVL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++ TRELA Q  +    L     V +  CIGG S+  +   LQ+G  IV GTPGR+ D 
Sbjct: 95  ILSNTRELAEQSAKVAMALGDFLNVSIHACIGGHSIQDDISKLQHGVQIVSGTPGRVFDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ K L + HLK ++LDEADEML  GF+  +  I    P   + ++ SAT+   I  +  
Sbjct: 155 IQRKELRVRHLKMLILDEADEMLTKGFKQQVYDIYRYLPPTTQNVVVSATLPQEILDMTD 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + +++ +  +      I    + V   + + + + ++        A++FCST    
Sbjct: 215 KFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDLYDTLTITQAVIFCSTINKC 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 + EH F VV ++G++SQ+ER   +   R G  RV IATDV  RG+D+  + LVI
Sbjct: 275 EWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQGNKRVLIATDVWGRGLDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +L ++ E  +HR GR+GR GRKG+++  + Q
Sbjct: 335 NYDLPNSRELYIHRIGRSGRFGRKGVAINFVKQ 367


>gi|170086121|ref|XP_001874284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651836|gb|EDR16076.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 517

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 192/340 (56%), Gaps = 8/340 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ + + LS+ G+  +TSVQ+  +   L  KD+L +A+TGSGKT+AF   + +  L    
Sbjct: 10  PQTL-QGLSDMGFSTMTSVQQKSIPVLLAGKDLLGAARTGSGKTLAF--LIPAVELLHRL 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F P +    + I PTRELA+Q+    + L A       + IGG SV  ER  L  G ++
Sbjct: 67  KFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTFGIVIGGTSVRAERERLIKGVNL 126

Query: 128 VVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMF 185
           +V TPGRL DH+R  KG    +LK +V+DEAD +L++GF ++++ I+   PK+ R+ ++F
Sbjct: 127 LVATPGRLLDHLREAKGFVFRNLKGLVIDEADRILEVGFEEEMKSIISILPKEDRQTMLF 186

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIV-NILRYH 242
           SAT +  +T LA+ + +   + +++  E    +     +  +V  SDR   ++   L+ +
Sbjct: 187 SATQTTKVTDLARISLRPGPIHIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLYTFLKKN 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  SV    +++      V+ L G+  QQ+R+N      +    +  +T+
Sbjct: 247 LKKKVIVFFSSCNSVKYHAELMNYIDVPVLDLHGKQKQQKRTNTFFEFINAETGILFSTN 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           VAARG+D+P ++ ++  +   +P + +HR GRT RAG+ G
Sbjct: 307 VAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVG 346


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 190/366 (51%), Gaps = 20/366 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------ 72
           GY   T VQ+  +      +D++  AQTGSGKT  F   + S    +     P       
Sbjct: 188 GYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGM 247

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P  L +APTREL  Q+  E      ++ V      GG  +  + R +  G  
Sbjct: 248 GYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 307

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRM 182
           ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I++    +S ++R+ 
Sbjct: 308 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  + V V  S++ + +++IL   
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTL 427

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +   ++F  T+      T  L    F   ++ G+ +Q+ER  AL++ R GR  + +AT
Sbjct: 428 PPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVAT 487

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
            VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G +V    +N +  A+    
Sbjct: 488 AVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIE 547

Query: 359 LFREAN 364
           L +EAN
Sbjct: 548 LLQEAN 553


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 187/355 (52%), Gaps = 9/355 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +  +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   PA A   + +AP
Sbjct: 1   MHPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKL---SEGGHPADAINCIVMAP 57

Query: 83  TRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           TRELA Q+ +++E   +    + V V     GV   +++R L  GA +V+ TPGRL  H+
Sbjct: 58  TRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVIATPGRLIAHL 117

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+   I  LA N
Sbjct: 118 SLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATMPAKIQQLAGN 177

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASVS 258
              +   V +A        +  +A  V   ++   I+ ++      +  I+F S++  V 
Sbjct: 178 ILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVK 235

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGID+ D+ LVI+
Sbjct: 236 EVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVIN 295

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            ++  + E+ +HR GRT RA   G+++  + +  Q   + + +  +  +   P P
Sbjct: 296 YDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDIYKIPVP 350


>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 187/357 (52%), Gaps = 27/357 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE------------N 66
           G+V  T +Q ++L   +  +DV  SA TGSGKT AF L +   +L               
Sbjct: 21  GFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPVMERILQRGGGRTTMGGLNAK 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGA 125
            + S  +A  AL + PTRELA Q    +  +   T +  A+ +GG  +V  +  +L++  
Sbjct: 81  RKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAALIVGGAKNVMSQAAELRSRP 140

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DHI   +G+++  L+ ++LDEAD +LDLGF+D++  I+ + P +R+ L+
Sbjct: 141 DVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLGFQDEVHEIVKACPTERQTLL 200

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-------------DR 231
           FSAT+S  +  L K   K  VRV    + ++ +      V   L              +R
Sbjct: 201 FSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVEVAPRLEQEFVRIRAGNEGVNR 260

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +  ++ +L        IVF  T+++  R   V      +   L G L+Q +R  AL+  R
Sbjct: 261 EGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIKCTELHGNLTQVQRLEALEAFR 320

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +G   V +ATD+AARG+D+P +E VI+ E+ S  +  +HR GRT RAGR G S  +I
Sbjct: 321 EGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRIGRTARAGRGGNSCTLI 377


>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
 gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
          Length = 481

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 166/315 (52%), Gaps = 11/315 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-W 96
           +DVL  A+TGSGKT AF + +    L + +       P A+ +APTRELA Q+ +E + +
Sbjct: 86  RDVLGCAETGSGKTAAFSIPMIQHCLQQPE-IKRGDGPFAIVMAPTRELAQQIEKEAKIF 144

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             +  G    + +GG ++  +R DL+NG  + V TPGRL DH+     N++ +  V+LDE
Sbjct: 145 SRSSKGFKTTIVVGGTNMSEQRMDLKNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDE 204

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF   I  ++ + PK  + L+FSAT+   +  LA +Y    V+V + + +   
Sbjct: 205 ADRMLDMGFEPQIREVMMNLPKPHQTLLFSATMPVEVEALAADYLNKPVKVKVGAVSVPT 264

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIVFCSTRASVSRFTKVLAEH 267
           S++      +  S + + +  +L    A+           +VF   +A       +L   
Sbjct: 265 SNVAQHLEKLVDSQKVDRLCELLLEEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAE 324

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
                A  G  SQQER  AL     GR  V +ATDVAARG+D+  ++ V++ +L    E+
Sbjct: 325 GVAAAAFHGGRSQQEREAALADFTTGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFED 384

Query: 328 LLHRSGRTGRAGRKG 342
            +HR GRTGRAG  G
Sbjct: 385 YVHRVGRTGRAGMTG 399


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 185/365 (50%), Gaps = 9/365 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 295 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 354

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 355 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 414

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 415 QGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 474

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K   + V +        D+    + V    +   +V 
Sbjct: 475 QRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 534

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 535 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 594

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G +V F  P++    A
Sbjct: 595 LVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPESDSHLA 654

Query: 357 ERLFR 361
           + L +
Sbjct: 655 QPLVK 659


>gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 416

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IP ++ E L    Y   T +Q   + PD+ E KD++  A TGSGKT AF L +   ++ +
Sbjct: 16  IPTLV-ERLEALEYSQPTPIQSRSI-PDILEGKDIIGGANTGSGKTAAFSLPILQKIVQQ 73

Query: 66  NDRFSPASAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++  +     ++ L + PTRELA QV   ++    + +  +      GGVSV+ +   L+
Sbjct: 74  DESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALR 133

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P+K++ 
Sbjct: 134 GGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQT 193

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT    +TTLA+   +D V V + S   + S +  R   V   ++   + ++++ H
Sbjct: 194 LLFSATFPDKVTTLAQQLLRDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKQH 251

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IATD
Sbjct: 252 QWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATD 311

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 312 IAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 638

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 188/371 (50%), Gaps = 14/371 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L +   L A   R     
Sbjct: 15  AVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLDRLTANAPRRK--G 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  AL + PTRELA+Q+G   +       +   V  GGV    +   L+ G  I++  PG
Sbjct: 73  AIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEALKKGVDILIACPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I    +++S+L+  VLDEAD MLD+GF  D++ ++   P +R+ LMFSAT+   I
Sbjct: 133 RLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQNLMFSATMPTEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVFC 251
             LA    +    V +   +     I      V   ++   +  +++       NA+VF 
Sbjct: 193 EQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHVEKGNKKFLLPWLIKNLQPPVVNALVFS 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  K L +      A+ G  SQ  R  AL+  + G+ +V +ATD+AARGID+ 
Sbjct: 253 RTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKVLVATDIAARGIDIS 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANVSVV 368
           +L  V + +L   PE  +HR GRT RAG  G +V F  P+  +  A  E+L R   + VV
Sbjct: 313 ELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAGIEKLNR-GKIPVV 371

Query: 369 ----WE--PAP 373
               W+  PAP
Sbjct: 372 SGHPWDGVPAP 382


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 190/366 (51%), Gaps = 15/366 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   + + +   GY   T +Q   + P L+ +D++  AQTG+GKT AF L +   
Sbjct: 3   FENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPMLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL       P      L ++PTRELA Q+   ++ L   TG+      GGV +  ++  L
Sbjct: 63  LLR-----GPRGKLRGLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KR 180
           + G  IV+  PGRL DH+    ++   ++ +V+DEAD M D+GF  DI  IL    + +R
Sbjct: 118 RAGTDIVIACPGRLLDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPER 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NIL 239
           + L+FSAT+   +  L + +  D V V I +     +     A+     D   A++  IL
Sbjct: 178 QTLLFSATMPADVRKLVQEFLTDPVTVQIGTVAPAVTVT--HALYPVRQDLKTALLKQIL 235

Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           R    A + +VF  T+    R    L +  + V ++ G LSQ  R  AL   +DG  +V 
Sbjct: 236 RQIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRR 355
           +ATD+A+RGID+ D+  VI+ ++    +  +HR GRTGR GR G +  FV P++  M R 
Sbjct: 296 VATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRA 355

Query: 356 AERLFR 361
            E+L +
Sbjct: 356 LEKLLK 361


>gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
 gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
          Length = 421

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 191/342 (55%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   D   P 
Sbjct: 26  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---DLSGPR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  ++++     T +   +  GG     +   L+    +++GTP
Sbjct: 83  VEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL + +    L++SH+K ++LDEAD MLD+GF +D+E +      + + L+FSAT    
Sbjct: 143 GRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGA 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIV 249
           A+  +     KD   + + S + Q ++   + ++ A  D  ++  +  +L     + AI+
Sbjct: 203 ALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIVQWLLANETYQKAII 261

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R    L     +   L GE  Q++R  A+   +DG ++V +ATDVAARG+D
Sbjct: 262 FTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKDGGSKVLVATDVAARGLD 321

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 322 IDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHN 363


>gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895]
 gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895]
          Length = 421

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/343 (34%), Positives = 185/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 190/360 (52%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 178 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 236

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 237 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 295

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 296 EVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 355

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           SAT    +  LA ++  + ++VNI S +    H       V+     RD  I ++ +   
Sbjct: 356 SATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKIME 415

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           G +N    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 416 GRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 475

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  L
Sbjct: 476 ATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSKQAREL 535


>gi|118616249|ref|YP_904581.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
 gi|118568359|gb|ABL03110.1| ATP-dependent RNA helicase, RhlE1 [Mycobacterium ulcerans Agy99]
          Length = 524

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 4/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF L + S L     R  PA
Sbjct: 89  EVLAARGISHPFPIQIETLPDTLGGRDVLGRGKTGSGKTLAFSLPMVSRLAGRPRR--PA 146

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L +APTRELA Q+   L+ L A  G+ V    GGV   R+   L +G  IVV   
Sbjct: 147 R-PTGLVLAPTRELASQITATLQPLAAVNGLRVTTIFGGVPQGRQVTALNSGVDIVVACS 205

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ + +++  ++  V+DEAD M DLGF   +  IL ++P   + L+FSAT+   
Sbjct: 206 GRLEDLMKQRLISLDSIEITVIDEADHMADLGFLPGVTRILAATPSGGQRLLFSATLDNG 265

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L   +  DAV  ++ S +     +      V+ +     +V+ L   G    I+F  
Sbjct: 266 VDKLVNRFLHDAVLHSVDSSDSPVPQMVRHVFHVSGAAAKKDLVHRL-ASGTGRRILFMR 324

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    +  K L E     V L G LSQ  R   L     G ARV +ATD+AARG+ +  
Sbjct: 325 TKHQARKLAKQLTESGVPAVDLHGNLSQPARDRNLAAFSKGEARVLVATDIAARGVHVDG 384

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           +ELV+H +  +  +  LHRSGRT RAG  G  V V+    ++    L R A + V  +
Sbjct: 385 IELVVHIDPPAEHKAYLHRSGRTARAGNAGDVVTVVLPEQRKDTHALMRRAGIRVTPQ 442


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 133/441 (30%), Positives = 210/441 (47%), Gaps = 21/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 279 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 338

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG       R + 
Sbjct: 339 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIV 398

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 399 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 458

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 459 QRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVE 518

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 519 ILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 578

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+  L S  +  +HR GRTGR G  G ++ F   ++    A
Sbjct: 579 LVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLA 638

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F +S +G        + A  D  K 
Sbjct: 639 QPL-----VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRG-------AVFASFDTRKN 686

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG+ + +   PV
Sbjct: 687 FQGKNTLNTAGISSAQAPNPV 707


>gi|333025550|ref|ZP_08453614.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332745402|gb|EGJ75843.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 734

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L   
Sbjct: 57  GLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASLAGG 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G 
Sbjct: 117 ---FTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGV 173

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 174 DILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLF 233

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  D V   + +     + + +  ++V   D+      I    G  
Sbjct: 234 SATLENEIDALVKRYLVDPVAHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKG-- 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 292 RTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 352 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 411


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 260 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 319

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 320 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 379

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 380 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 439

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 440 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 499

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 500 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 559

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 560 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 607


>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380651|sp|A7TJM9|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 752

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 195/357 (54%), Gaps = 22/357 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS+ GY   + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 244 KGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 298

Query: 73  --SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+Q   VG+++    +  G+   + +GG+++ ++ ++L+    I
Sbjct: 299 KVASTRVIVLTPTRELAIQIADVGKKIGKYVS--GLTFGLAVGGLNLRQQEQELKTRPDI 356

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DH+R     N+  ++ +V+DEAD ML+ GF++++  IL   P KR+ L+FS
Sbjct: 357 VIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQTLLFS 416

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----- 241
           AT++  I +L     +  VR+ I    +  + +      V +  RD+    +L Y     
Sbjct: 417 ATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQE--FVRIRKRDHLKPALLFYLIRKL 474

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G K  +VF + +    +   +L     +V  L G L+Q++R  ++   +     V I
Sbjct: 475 DGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLI 534

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 535 CTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591


>gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 455

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/379 (34%), Positives = 191/379 (50%), Gaps = 15/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   LSE GY   T +Q A     L  +DVL  AQTG+GKT+A+ L + + L   
Sbjct: 13  NLNTPLKNNLSEVGYEVPTPIQGATYASVLSGQDVLGLAQTGTGKTLAYLLPILNDL--- 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F+      AL I PTREL  QV  E E +   T + V    GG S+ ++R  L   A
Sbjct: 70  --KFAKEKTVRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHGGNSMKKDRDALAQSA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + +  + +K VV+DE D MLDLGFR  +  I D  PKKR+ +MF
Sbjct: 128 DIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFRFQLTNIFDLLPKKRQHIMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGA 244
           SAT++  I +L  ++     R+ IA       +I   A  V     + N + ++L     
Sbjct: 188 SATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAYAVPNYYTKVNLLQHLLEQEET 247

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQ--VVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K  +VF S +    R  + L E +F+  +  +    +Q  R+  L     GR R+ IAT
Sbjct: 248 FKKVLVFVSNKKIADRIYEQL-EPVFEKNIGIVHANKTQNHRNRVLSAFDAGRIRIVIAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARG+D+  +  VI+ +    PEN +HR GRTGRA   G S+      +    E  ++
Sbjct: 307 DLVARGLDIDQISHVINFDTPKYPENYMHRIGRTGRANADGNSIL-----LHNPEELAYK 361

Query: 362 EANVSVVWEPAPSVEAIRE 380
           EA  +++    P +E  +E
Sbjct: 362 EAIETLMQIAVPDIEFPKE 380


>gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
 gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
          Length = 422

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTTQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|160380616|sp|A6ZUA1|DBP3_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP3; AltName: Full=DEAD
           box protein 3; AltName: Full=Helicase CA3
 gi|151943729|gb|EDN62039.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 523

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 182/318 (57%), Gaps = 13/318 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+   S L+ +  +         L I+PTRELA Q+   L
Sbjct: 147 LSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNL 202

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K G+      GGV    +R  L+  + +VV TPGRL D ++   +++S +  +VL
Sbjct: 203 IVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLDLLQEGSVDLSQVNYLVL 261

Query: 155 DEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  LA  +  + ++V+I + +
Sbjct: 262 DEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTD 321

Query: 214 RQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIVFCSTRASVSRFTKVLAE 266
           +  ++     ++  +  R  +  ++ +L+ YH      +  ++F   +   +R  + L  
Sbjct: 322 QLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKY 381

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           + + + A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D+P+++ VI+       E
Sbjct: 382 NGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+ G +
Sbjct: 442 DYVHRIGRTGRAGQTGTA 459


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|326511343|dbj|BAJ87685.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 410

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 169/316 (53%), Gaps = 13/316 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++QE  + P +  +DV+  AQ+G+GKT  F +++         R   A   P A
Sbjct: 56  GFERPSAIQERAIMPIITGRDVIAQAQSGTGKTATFTISILQ-------RIDMALREPQA 108

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  L     V    C+GG S+  +   LQ G H++VGTPGR+ D
Sbjct: 109 LILAPTRELAQQIQKVVIALGDYMNVDCHACVGGTSIKEDIAKLQAGPHVIVGTPGRVFD 168

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  + L   H+K   LDEADEML  GF +++  I    P + ++++ SAT+   +  + 
Sbjct: 169 MINRRFLKTDHIKVFALDEADEMLSKGFAENMYDIFQLLPAETQVVLLSATMPNDVLEVT 228

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
           K + +D +R+ +  E      I  R   +A+   D   + + ++        A++FCSTR
Sbjct: 229 KKFMRDPIRILVKKEELTLEGI--RQFYIAVEKEDWKLDTLCDLYETVTITQAVIFCSTR 286

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ L    F V A+ G++  Q R   ++  R G +RV IATD+ ARGID+  + 
Sbjct: 287 RKVDWLTEKLHSREFTVSAMHGDMEMQAREVVMKEFRSGSSRVLIATDLLARGIDVQQVS 346

Query: 315 LVIHAELSSNPENLLH 330
           LVI+ +L S+ EN +H
Sbjct: 347 LVINYDLPSSKENYVH 362


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 194/384 (50%), Gaps = 17/384 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N +R 
Sbjct: 146 LAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNNLNRA 205

Query: 70  SPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P    +AP AL ++PTREL++Q+  E      +TG    V  GG     +  +L  G  
Sbjct: 206 KPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELTRGCG 265

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PKKR 180
           ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         P +R
Sbjct: 266 LLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGER 325

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L++SAT    I  +A+ +      + +        +I      V   D+   ++ +L+
Sbjct: 326 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLK 385

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  RV +A
Sbjct: 386 EHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLVA 445

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           TDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++       +N+     
Sbjct: 446 TDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIVDDLI 505

Query: 358 RLFREANVSVVWEPAPSVEAIRER 381
            L RE N +V+    P V+A+ ++
Sbjct: 506 PLLRETNQTVL----PEVQALAKK 525


>gi|322696830|gb|EFY88617.1| ATP-dependent RNA helicase dbp3 [Metarhizium acridum CQMa 102]
          Length = 591

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 185/336 (55%), Gaps = 22/336 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q A     L  +DV+  A+TGSGKT+AF L    ++ A   + + A     + I+PT
Sbjct: 195 TPIQAASWPSTLSGRDVVGVAETGSGKTMAFALPCVESVSAIGKKGTKA-----VVISPT 249

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q   +L  L A   +      GG S   +R  +  GA I+V TPGRL D +    
Sbjct: 250 RELAMQTHTQLASLAALAKLKCVCLYGGSSKDEQRAMVNRGADIIVATPGRLKDFMSDGT 309

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSATISPAITTLAKNYQ 201
           +++S  +  VLDEAD MLD GF DDI+ IL +  + ++R+ LMF+AT   ++  LA  + 
Sbjct: 310 VDLSDCQFAVLDEADRMLDKGFEDDIKQILGACLARERRQTLMFTATWPQSVQALASTFM 369

Query: 202 KDAVRVNIAS----------ENRQHSDIDYRAVLVALSDRDNAIVNILRYH---GAKN-- 246
            D V++ I S          E + ++ I  +  +V   D++  ++ IL+ H     KN  
Sbjct: 370 VDPVKITIGSGGKETENGSVELQANTRITQKVEVVDPKDKEFRLLQILKQHQQGKQKNDR 429

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC  +   +R    L+    +V  + G+L Q++R+ +L+  + G+  V +ATDVAAR
Sbjct: 430 ILVFCLYKKEATRVENFLSRKGIRVGGIHGDLKQEQRTRSLEAFKTGQTPVLVATDVAAR 489

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           G+D+P+++LVI+       E+ +HR GRTGRAG  G
Sbjct: 490 GLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGNTG 525


>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 417

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 14/378 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++ E L+ +G      +Q A +   L  +DVL   +TGSGKT+AFGL L   L     
Sbjct: 15  PALVSE-LAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPL---LHRTAG 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +    PLAL + PTRELA QV   L    A  G+  A  +GG+S+ R+   L+ GA +
Sbjct: 71  RRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAGAEV 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFS 186
           +V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L+  +P  +RML FS
Sbjct: 131 LVATPGRLHDLIDRGDARLDQVAITVLDEADQMADMGFLPQVTKLLEQVAPGGQRML-FS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  ++       + + +  + +   D+  A+ +I    G   
Sbjct: 190 ATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDKPAALAHIAAREG--R 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+    R  + L     +  AL G  SQ +R+  L+  R G+    +ATDVAAR
Sbjct: 248 TIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++A+  +  ++ LHR GRT RAG  G  V ++  + +R   RL   A ++
Sbjct: 308 GIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTAGIN 367

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P    +R  D++
Sbjct: 368 ------PKTTRVRAGDSE 379


>gi|194017773|ref|ZP_03056383.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
 gi|194010673|gb|EDW20245.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
          Length = 439

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 187/353 (52%), Gaps = 34/353 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E G+   T +Q+ I+   L+ + V+  +QTG+GKT A+ L L  ++        
Sbjct: 15  IIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHSI-------D 67

Query: 71  PASAPLALAI-APTRELAVQVGRELEWLYAKTG----VVVAVCIGGVSVHRERRDLQNGA 125
           P+   + + I APTRELA Q+ +E + +  K      +   + IGG    +  + L+N  
Sbjct: 68  PSKEHVQVVITAPTRELANQIFKEAQTILKKASPEEEIKAKLYIGGTDKQKSIQKLKNQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + LN+    ++V+DEAD MLD+GF +D++ I    P++ +ML+F
Sbjct: 128 HLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVN-----IASENRQHSDIDYRAVLVALSDRDN------A 234
           SATI   +    K Y  +    +     I +EN QH       +LV    RD        
Sbjct: 188 SATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQH-------ILVPSKQRDKLKLLHEM 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+  Y G    I+F +T+ +V      L E   +V  L G L+ +ER   ++ + D  
Sbjct: 241 VTNVQPYLG----IIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
               +A+D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G+++ +
Sbjct: 297 FTYIVASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTI 349


>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 541

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 187/336 (55%), Gaps = 11/336 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++  GY   T VQ   +   L  +D++V++QTGSGKT AF L + + L+      +P+  
Sbjct: 136 VAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKTAAFMLPVITQLIGTCHSPNPS-- 193

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              +A+ PTRELA+Q+  E       T +      GG  +  + R+L  G  IV+ TPGR
Sbjct: 194 --CVALCPTRELAIQIFEETRKFCKGTDLKTTCVFGGAPITEQIRNLSRGIDIVIATPGR 251

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATIS 190
           L D ++   + +S ++ ++LDEAD MLD+GF   ++ ++   D  P   R+ ++FSAT  
Sbjct: 252 LIDILKQHCITLSEVRFLILDEADRMLDMGFEPQMQEVINGWDMPPADDRQTMLFSATFP 311

Query: 191 PAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            A+  LA+++ +    R+++  ++   S I+ R +  +  D+ + ++ +++       +V
Sbjct: 312 DAVRNLARDFMRPKYCRISVGMQDAPKS-IEQRFIYCSEMDKFSELLGVIKEVDGP-TLV 369

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   + SV R  + L +    VVA+ GE    +R  AL+    GRA + +ATDVA+RG+D
Sbjct: 370 FAERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGRANIMVATDVASRGLD 429

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + ++  VI+ +L ++ +   HR GRTGRAG+ G++ 
Sbjct: 430 ISNVAHVINLDLPTDLDTYTHRIGRTGRAGKHGLAT 465


>gi|50302969|ref|XP_451422.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607669|sp|Q6CXB7|HAS1_KLULA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49640553|emb|CAH03010.1| KLLA0A09669p [Kluyveromyces lactis]
          Length = 497

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 199/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T+VQ   + P L  KDVL +A+TGSGKT+AF +     L   + +F P 
Sbjct: 47  KAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--HSLKFKPR 104

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G +I++
Sbjct: 105 NGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEADKLMKGVNILI 161

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+V+DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 162 ATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSA 221

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+ SE +   +D   +  +V  SD R   + + L+ +  
Sbjct: 222 TQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRFLLLFSFLKRNQK 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + TDVA
Sbjct: 282 KKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 341

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 342 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPTEL 391


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score =  180 bits (457), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 275 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 334

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 335 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 394

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 395 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 454

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 455 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 514

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 515 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 574

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 575 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 622


>gi|239944102|ref|ZP_04696039.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 395

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/281 (36%), Positives = 159/281 (56%), Gaps = 9/281 (3%)

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP AL + PTREL  QV  +L        V V    GG +   +   L+ G  ++VGTPG
Sbjct: 20  APQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVIVGTPG 79

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + L++SH++ +VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+
Sbjct: 80  RLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLFSATMPGAV 139

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGAKNA 247
            +LA+ Y      +N  S + + + +       YRA  +   D+   +  IL+  G   A
Sbjct: 140 ISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAHNM---DKPEMLARILQADGRGLA 196

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  V + TDVAARG
Sbjct: 197 MIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARG 256

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  +  V++ +   + +  LHR GRTGRAG KG+++ ++
Sbjct: 257 IDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITLV 297


>gi|225455602|ref|XP_002269873.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 711

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 182/352 (51%), Gaps = 14/352 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 126 ISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGP 185

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +R S  +     P  L + PTRELA QV  + +      G+      GG     +   L+
Sbjct: 186 NRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQEIKLK 245

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  IVVGTPGR+ DHI    ++ S LK  VLDEADEML +GF +D+E IL       K 
Sbjct: 246 RGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGMLXDVSKV 305

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRV-NIASENRQHSDIDYRAVLVALSD--RDNAIVN 237
           + L+FSAT+   +  ++  + K  ++  ++    +  +  + R +++  S   R   I +
Sbjct: 306 QTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPD 365

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++R Y      I+F  T+ S S     LA  L    AL G++ Q +R   L   R G+  
Sbjct: 366 VIRCYSSGGRTIIFTETKDSASE----LAGLLPGARALHGDIQQSQREVTLSGFRSGKFM 421

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V + 
Sbjct: 422 TLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLF 473


>gi|302503157|ref|XP_003013539.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
 gi|291177103|gb|EFE32899.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
          Length = 812

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 376 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 435

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 436 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 495

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 496 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 555

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 556 PDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 615

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   VA  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 616 TVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 676 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 735

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 736 GRAGKSGVAITFL 748


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 190/337 (56%), Gaps = 16/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL       PA A    
Sbjct: 28  GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVNRLLTR-----PALADRKP 82

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R  LQ G  +++ TP
Sbjct: 83  EDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQREILQQGVDVIIATP 142

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++  R+ L+FSAT+
Sbjct: 143 GRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERTTRQTLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
           S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++ +L R  GA+  +
Sbjct: 203 SHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLLGLLSRSEGART-M 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  + +ATDVAARG+
Sbjct: 262 VFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 322 HIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 190/337 (56%), Gaps = 16/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL       PA A    
Sbjct: 28  GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVNRLLTR-----PALADRKP 82

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R  LQ G  +++ TP
Sbjct: 83  EDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQRELLQQGVDVIIATP 142

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++  R+ L+FSAT+
Sbjct: 143 GRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERTTRQTLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
           S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++ +L R  GA+  +
Sbjct: 203 SHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLLGLLSRSEGART-M 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  + +ATDVAARG+
Sbjct: 262 VFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 322 HIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPA 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + + CI GG     + 
Sbjct: 153 IVHINHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQI 211

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ 
Sbjct: 272 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR 331

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 392 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 451

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 452 QVSDLISVLREANQAI 467


>gi|242067048|ref|XP_002454813.1| hypothetical protein SORBIDRAFT_04g037930 [Sorghum bicolor]
 gi|241934644|gb|EES07789.1| hypothetical protein SORBIDRAFT_04g037930 [Sorghum bicolor]
          Length = 823

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 192/354 (54%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA----END 67
           +AL++ GYV+ T VQEA L   L  KDVLV A+TG+GK+ AF L A+ S L A     N 
Sbjct: 367 KALTDAGYVHTTVVQEAALPICLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKTNTNQ 426

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           R SP      L + PTRELA+Q+  E    L    G+ V   IGG     ++R L+ +  
Sbjct: 427 RVSPI---FVLVLCPTRELAIQLAAEANVLLKYHEGIGVQTLIGGTRFKLDQRRLESDPC 483

Query: 126 HIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI  K    + +  LK +VLDEAD +LDLGFR DIE I+DS P++R+ 
Sbjct: 484 QILVATPGRLLDHIENKSSFSVRLMRLKLLVLDEADHLLDLGFRKDIEKIVDSLPRQRQT 543

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
           L+FSATI   +  +++   ++D V V+          + +    ++V      + + ++L
Sbjct: 544 LLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETPTKVQQSCLVVPHELHFHMVHHLL 603

Query: 240 RYHGAK----NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           + H  +      IVFC+T A V+ F  ++   L   V  +     Q  R+   +  R   
Sbjct: 604 QEHIDREVDYKVIVFCTT-AMVTEFMYIMLRDLKLNVREIHSRKPQLFRTRISEEFRGSN 662

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + + +DV+ RG++ PD+ LVI   +  + E+ +HR GRTGR G+ G  + ++
Sbjct: 663 RLILVTSDVSTRGVNYPDVTLVIQVGVPPDREHYIHRLGRTGREGKSGKGILLL 716


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score =  180 bits (457), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 182/355 (51%), Gaps = 6/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L+  D +  AQ+G+GKT  F   ++S  L   D      A  AL
Sbjct: 42  GFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATF--VISSLQLINYDYV----ACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L +  LK  +LDEADEML  GF+  I  +        ++ +FSAT+   I  L  
Sbjct: 156 IDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + +D   + +  +      I +   +     + + + ++        +I++C+TR  V 
Sbjct: 216 RFMRDPKTILVKKDELTLEGIQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVD 275

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ +   LF V  + G++ Q++R   ++  R G  RV + TD+ ARGID+  + LVI+
Sbjct: 276 ILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVIN 335

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +L  +P+  +HR GR+GR GRKG+++  +  + + + +    E+  S   E  P
Sbjct: 336 YDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMP 390


>gi|329940598|ref|ZP_08289879.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329300659|gb|EGG44556.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 497

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/378 (33%), Positives = 194/378 (51%), Gaps = 13/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +
Sbjct: 75  DMPEQLLAELGRQGVTAPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ 134

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PL L + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 135 --RAEPRQ-PLGLILVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQAGALRGGA 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            ++V TPGRL D I      ++H+   VLDEAD+M  +GF   +  +LD   P+ +RML 
Sbjct: 192 EVLVATPGRLKDLIDRGECRLNHVDITVLDEADQMAGMGFMPQVTALLDQVRPEGQRML- 250

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    G 
Sbjct: 251 FSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTQIAARDG- 309

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 310 -RVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 368

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+  +A 
Sbjct: 369 ARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRVMSDAG 428

Query: 365 VSVVWEPAPSVEAIRERD 382
           +       P    IR  D
Sbjct: 429 IR------PQTTQIRSGD 440


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 180/343 (52%), Gaps = 8/343 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           + + +S  GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+   A + 
Sbjct: 290 LSKNVSRSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILHQLMIGGASSS 349

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            FS    P A+ +APTREL  Q+  E       T V   V  GGVS+  +  DL  G ++
Sbjct: 350 FFSELQEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIRHQVSDLNKGCNV 409

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRML 183
           + GTPGRL D I    + +S ++  VLDEAD MLD+GF  D+  ++ S    S + R+ L
Sbjct: 410 LCGTPGRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEPDMRRLVASPGMPSREGRQTL 469

Query: 184 MFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT    I  LA ++ K D + + +       SD++   + V    +   ++++++  
Sbjct: 470 MFSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFSKREQLLDLVKTC 529

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  IVF   +         L +      ++ G+  Q +R  AL   + G+  V +AT 
Sbjct: 530 GNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADFKYGKCPVLVATS 589

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V
Sbjct: 590 VAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGRCGNVGRAV 632


>gi|302660003|ref|XP_003021686.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
 gi|291185595|gb|EFE41068.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
          Length = 813

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 377 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 436

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 437 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 496

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 497 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 556

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 557 PDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 616

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   VA  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 617 TVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 676

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 677 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 736

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 737 GRAGKSGVAI 746


>gi|255533113|ref|YP_003093485.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346097|gb|ACU05423.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/400 (32%), Positives = 208/400 (52%), Gaps = 26/400 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + I  A+++ G+   T +QE  + P L  +D+   AQTG+GKT A+ L + 
Sbjct: 3   KKFEDFNLNRQILNAVADAGFTEATPIQEKAIAPVLSGQDIFGIAQTGTGKTAAYVLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++   A  AL +APTRELA+Q+   ++   A T +   V  GG+    +  
Sbjct: 63  MQL-----KYAQGDAARALILAPTRELAMQIAEHVKMFAAYTDLRSVVIFGGIGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I++ TPGR  D      +N  +LK +VLDEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 QIKAGVDIIIATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  +A ++ K+   + +A +    + +     L  + +    I N+L
Sbjct: 178 RQNLLFSATMSNLVQKIAGDFLKNPTIIEVAEQATPAATV--TQTLYEVPNFKTKI-NLL 234

Query: 240 RYHGAKN------AIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           + H  KN       I+FC T+       S  T+   E   +V+       Q  R N++  
Sbjct: 235 Q-HLMKNDEEFKRLIIFCKTKTVADNIYSFITRRFGEDAVRVI--HANKGQNTRINSINN 291

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
            ++G  RV +ATDVA+RGID+ ++  VI+ ++    E+ +HR GRTGRA  KG ++ F  
Sbjct: 292 FKEGNIRVLVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFCS 351

Query: 349 P--QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
           P  +   ++ E+L R+    V   P   VE     + Q I
Sbjct: 352 PAEKYYIQKIEKLIRQQIPVVPLPPEVFVEETPYDEKQAI 391


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 189/366 (51%), Gaps = 20/366 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP------- 71
           GYV  T VQ+  +      +D++  AQTGSGKT  F   + S    +     P       
Sbjct: 181 GYVQPTPVQKYSVPIVTSGRDLMACAQTGSGKTAGFLFPILSQAFDQGPAPIPHDEDSAL 240

Query: 72  -----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P  L +APTREL  Q   E      ++ V      GG  +  + R +  G  
Sbjct: 241 GYRSRKAYPTTLILAPTRELVCQTHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCD 300

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRM 182
           ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I++ +     ++R+ 
Sbjct: 301 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMPGVEERQT 360

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  + V V   ++ + +++IL   
Sbjct: 361 LMFSATFPRDIQVLARDFLKDYVFLSVGRVGSTSENITQKVVFVEDQEKRSYLLDILHTL 420

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +   ++F  T+      T  L    F   ++ G+ +Q+ER  AL++ R GR+ + +AT
Sbjct: 421 PPEGLTLIFVETKRMADALTDFLLNSSFPATSIHGDRTQRERERALELFRSGRSSIMVAT 480

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
            VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G +V    +N +  A+    
Sbjct: 481 AVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIE 540

Query: 359 LFREAN 364
           L +EAN
Sbjct: 541 LLQEAN 546


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 182/344 (52%), Gaps = 18/344 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S         +PA       
Sbjct: 216 YTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSAAPAPAAGGNF 275

Query: 73  ------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  
Sbjct: 276 YGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCD 335

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRM 182
           ++V TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I++    P+   R+ 
Sbjct: 336 LLVATPGRLVDLIERGRISLTNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVNDRQT 395

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT    I  LA+++ KD V +++        +I  R   V   D+ + +++IL  H
Sbjct: 396 LMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQRIEYVEDHDKRSVLLDILHTH 455

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G+    ++F  T+         L    F   A+ G+ +Q+ER  AL+M R+ R  + +AT
Sbjct: 456 GSTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQRERERALEMFRNARCPILVAT 515

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 516 AVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 559


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 184/342 (53%), Gaps = 9/342 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----AE 65
           V+ +AL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL    AE
Sbjct: 19  VVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAAE 78

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 79  NRQ---VNQPRALIMAPTRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAATERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 200/377 (53%), Gaps = 15/377 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK+ EN+ +     +   G+   +++Q   +   +R KDV+  AQ+G+GKT  F + +  
Sbjct: 28  MKLQENLLR----GIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + + +          AL ++PTRELA Q+ + +  L     VV   C GG ++ ++   
Sbjct: 84  VIDSSSKDLQ------ALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPK 178
           +  G H++ GTPGR+ D I+ + +N  H+K +VLDEADE+L   LGF+  +  I    P 
Sbjct: 138 VNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPS 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
             ++++ SAT+S  +  + K +  D V++ +  +      I    + V   + + + + +
Sbjct: 198 SVQVVVVSATMSKVVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+T+  V   +  L ++ F V ++ G++ Q +R   +   R G +RV
Sbjct: 258 LYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    + +
Sbjct: 318 LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK 377

Query: 358 RLFREANVSVVWEPAPS 374
            +  E + S+  +P P+
Sbjct: 378 SI--EKHYSIKIKPMPA 392


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 274 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 333

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 334 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 393

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 394 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 453

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 454 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 513

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 514 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 573

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 574 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 621


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 173/315 (54%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D +  AQ+G+GKT  F + +   +  ++          AL ++PTRELA+Q+   ++ L
Sbjct: 64  RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQ------ALILSPTRELAIQIQNVVKHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +    CIGG +V  + + LQ G  IV GTPGR+ D I+ + L   ++K ++LDEA
Sbjct: 118 GDYMNIHTHACIGGKNVGDDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE+   GF++ I  I    P   ++++ SAT+   +  +   +  D V++ +  +    S
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    V     D + + + ++        A++FC+T+  V+     + +  F VVA+ G
Sbjct: 238 GIKQFYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q ER + +   R G +RV I+TDV ARGID+  + LVI+ +L ++ EN +HR GR+G
Sbjct: 298 DMKQDERDSIMNEFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQN 351
           R GRKG ++ +I ++
Sbjct: 358 RFGRKGTAINLITKD 372


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 183/348 (52%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+ + +   + +  Y   T VQ+  +      +D++  AQTGSGKT AF L + S +L  
Sbjct: 420 NLNETVRNNVMKAKYEKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIISGILRD 479

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             ++   S    P  + ++PTRELA+Q+  E       T +   V  GG SV  +  D+ 
Sbjct: 480 GVQSGSLSFVQTPQCIIVSPTRELAIQIFNEARKFSHNTILRPVVIYGGTSVQYQTNDVG 539

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK- 179
            G HI+VGTPGRL D I  + +++     +VLDEAD MLD+GF   +E ++++   PKK 
Sbjct: 540 KGCHILVGTPGRLQDFIDRQKISVEKCNYLVLDEADRMLDMGFGPAMERLVNNPNMPKKG 599

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT    +   A  Y  + + + I        D++ R + V    + + ++ I
Sbjct: 600 DRQTLMFSATFPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIEVDQFQKKDKLIEI 659

Query: 239 LRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L      +  +VF  T+ S      +L++  F   ++ G+  Q+ER  AL+  + GRA V
Sbjct: 660 LHDSPEDDKTLVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEALRDFKTGRAPV 719

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+P ++ VI+ +L  +    +HR GRTGR G  G + 
Sbjct: 720 MVATSVAARGLDIPKVKHVINYDLPEDISEYVHRIGRTGRVGNLGKAT 767


>gi|14325565|dbj|BAB60468.1| ATP-dependent RNA helicase [Thermoplasma volcanium GSS1]
          Length = 373

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 191/353 (54%), Gaps = 16/353 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   + E++   GY   T VQ   +   L   D++V ++TGSGKT A+ + +
Sbjct: 1   MKGFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    E           AL + PTRELAVQV +  E L  ++G+   V  GGVS++++ 
Sbjct: 61  INNTAKE-------KGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  GA+I+VGTPGR  D I    LN   +   VLDEADEMLD+GF +DI+ I++  P 
Sbjct: 114 ELILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPV 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSATI   I  LAK +  +   + ++ +    + ID+     A+S R+  +  +
Sbjct: 174 ERQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHN---YAVSRRERKLRTL 230

Query: 239 LRY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             Y   +  + +I+F  T+A  +   + L  H    V + G+L+Q +R  AL   ++   
Sbjct: 231 FSYIDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKN-FG 289

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  +AT+VAARG+D+  +  +I+ ++  +P   +HR GRT R G  G +  ++
Sbjct: 290 RFLVATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIV 342


>gi|225679862|gb|EEH18146.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Paracoccidioides brasiliensis Pb03]
          Length = 615

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 181 LPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGELP 240

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+
Sbjct: 241 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYSLR 300

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 301 NGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEK 360

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 361 PDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVD 420

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   V+  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 421 TVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 480

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 481 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 540

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 541 GRAGKSGVAI 550


>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 194/359 (54%), Gaps = 18/359 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V  T +Q A++   L  +D+  SA TGSGKT AF L +   LL    R+S  +   A+
Sbjct: 18  GFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILERLL---HRYSGRTK--AI 72

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA Q    L      T +  ++ +GG  +V+ +  +L++   ++V TPGRL D
Sbjct: 73  ILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELRSRPDVIVATPGRLLD 132

Query: 138 HIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           HI    G+ +  ++ +VLDEAD +LDLGF+D++  ++ + P +R+ L+FSAT++  +  L
Sbjct: 133 HITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQTLLFSATMNTKVDDL 192

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----------SDRDNAIVNILRYHGAKN 246
            +   K  VRV I S+     DI+    L             ++R+  ++ +L     K 
Sbjct: 193 IQLSMKRPVRVRI-SDKANSMDIEVAPRLEQEFVRVRAGNEGANREGMLLALLTRTFKKQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+A+  R   +      +   L G LSQQ+R  AL+  R G   V +ATD+AAR
Sbjct: 252 TIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFRKGDVDVLLATDLAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           G+D+  ++ VI+ E+ S     +HR GRT RAGR G S  +I +  +   + L ++A V
Sbjct: 312 GLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRRHLMKELIKDAEV 370


>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
 gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
          Length = 527

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 189/388 (48%), Gaps = 50/388 (12%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E     P S 
Sbjct: 22  LTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE-----PVSH 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PT ELA Q+  +        GV V V  GG     E + L    HIVV  PGR
Sbjct: 77  -FALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGR 135

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L FSAT+    
Sbjct: 136 LADHLTGCDTFSFDNLKYLVVDEADPMLNGDFDESLSIIERCLPKTRQNLFFSATM---- 191

Query: 194 TTLAKNYQKDAVRVNIASEN---------RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
               K++ K++    IAS+          R    +D+  ++ A  D D  ++  LR +  
Sbjct: 192 ----KDFIKESSIFPIASDCFEWCEASAVRTVETLDHGYLVSADYDPDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNM------ 352
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGM  S+F  P+++      
Sbjct: 308 TDVAARGLDIPSVELVMNHILPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367

Query: 353 --------------QRRAERLFREANVS 366
                         QR  ER+F + NV+
Sbjct: 368 EEEINTKLTEHPIDQRMVERIFMQVNVT 395


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            +   + +APTRELA Q+ +++E   +    + V V     GV   +++R L  GA +V+
Sbjct: 71  DSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAI 248
              I  LAK+   +   V +A        +  +A  V   ++   I++ +      +  I
Sbjct: 191 PAKIQQLAKSILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIHSLFAEQTPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQ 353


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 182/354 (51%), Gaps = 10/354 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ + + L E+G    + +Q   L   L  +D++  A TGSGKT+ F L +    L E 
Sbjct: 229 IPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEE 288

Query: 67  DRFS--PASAPLALAIAPTRELAVQ----VGRELEWLYAKTG---VVVAVCIGGVSVHRE 117
            +        P  L + P+RELA Q    V      L+   G   +   + IGG+ +  +
Sbjct: 289 CKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQ 348

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
               + G H+++ TPGRL D +  K +N    K + LDEAD ++DLGF DDI  +LD+  
Sbjct: 349 EHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFT 408

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++     V VN+      + ++      V    +   ++ 
Sbjct: 409 NQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLE 468

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++FC  +  V    + L     + V++ G+ SQ ER +A++  R+G+  V
Sbjct: 469 CLQ-KTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDV 527

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +ATDVA++G+D P+++ VI+ ++    EN +HR GRTGR G KG++   I +N
Sbjct: 528 LVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKN 581


>gi|121595647|ref|YP_987543.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607727|gb|ABM43467.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 625

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 196/386 (50%), Gaps = 50/386 (12%)

Query: 8   PQVIGEALSERGYVNLTSVQEAIL------NPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           P+++ +A+++ GY   T VQ   +        D    D++VS+QTGSGKT AF L +  T
Sbjct: 46  PELV-QAVADLGYTEPTQVQTRAIPLAMGSGDDASFIDLMVSSQTGSGKTAAFLLPVLHT 104

Query: 62  LLAEN-----------------------------DRFSP-------ASAPLALAIAPTRE 85
           L+ +                               R +P       A+ P AL + PTRE
Sbjct: 105 LIRQQAEAEVAERAAFERAAAEAAARGEAPPKRPKRKNPTQARNFKAATPGALVLCPTRE 164

Query: 86  LAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           LA QV  + ++ +    G+ +A  +GG+    +   LQN A++VV TPGRL D  R + +
Sbjct: 165 LAQQVAHDAIDLVKHCKGLRIANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSQQI 223

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD- 203
            +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     D 
Sbjct: 224 KLDQVQFLVVDEADRMLDLGFSDDLAEINQLTAQRKQTMMFSATFAPRIQQLAMRVMHDN 283

Query: 204 ---AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSR 259
                ++ I +   +H++I         +     +++  LR      AIVF ST+     
Sbjct: 284 GASVKKIQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIDQAIVFASTQVECDG 343

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 344 LANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFNF 403

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
            L    E+  HR GRTGRAGR G++V
Sbjct: 404 GLPMKAEDYTHRIGRTGRAGRDGLAV 429


>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 398

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 183/341 (53%), Gaps = 1/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L +   +L+E+    
Sbjct: 12  ILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILE-ILSEDPTKV 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA+QV   ++       +      GGV    +++ L  G  ++V 
Sbjct: 71  RAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQRLIEGVDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P  R+ ++FSAT+S
Sbjct: 131 TPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFSATLS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK    + + ++I+ +      ID     V    +   + ++++ +    A++F
Sbjct: 191 DQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWNQALIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +   +  A     SQ+ R+  L   ++G+ +  +AT +AARGID+
Sbjct: 251 IETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVATGIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L  V++ +L    ++ +HR GRTGRAG KG ++  + ++
Sbjct: 311 DELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKD 351


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 9/349 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           IGE +    Y   T VQ+  +      +D++  AQTGSGKT AF L + S LL    ++ 
Sbjct: 81  IGENVRRAKYDKPTPVQKYGIPIVSAGRDLMACAQTGSGKTAAFLLPILSGLLRDGLQSS 140

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             S    P  + ++PTRELA+Q+  E      KT +   V  GG  V  +   +  G ++
Sbjct: 141 ALSGQQCPQCIVVSPTRELAIQIFDEARKFSYKTMIKCVVIYGGTKVQHQTSMVDRGCNV 200

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRML 183
           +V TPGRL   I    +++  +K +VLDEAD MLD+GF  D+E ++++   PKK  R  L
Sbjct: 201 LVATPGRLLHFINSGMISVEKVKYLVLDEADRMLDMGFGPDMEKLVNNPAMPKKGERHTL 260

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +   A  Y  + + + +      +SD+    V V  + + + ++ IL+   
Sbjct: 261 MFSATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEVPQAAKKDKLIEILQSQP 320

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+         L++  F   ++ G+  Q+ER  AL   +  RA V +AT 
Sbjct: 321 ENDRTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRASVLVATS 380

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           VA+RG+D+P ++ V++ +L S  ++ +HR GRTGR G  G+S  F  P+
Sbjct: 381 VASRGLDIPAVKHVVNFDLPSEIDDYVHRIGRTGRCGNTGLSTSFYNPE 429


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 177/338 (52%), Gaps = 11/338 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           R Y   + +Q   +   L  +DVL  A+TGSGKT AF + +    L +         P A
Sbjct: 50  REYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQHALNQAP-LRQGDGPYA 108

Query: 78  LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           + +APTRELA Q+  E + +  +  G   A+ +GG ++  +R  L++G  IVV TPGRL 
Sbjct: 109 IVMAPTRELAQQIEAEAKTFTRSSKGFRTAIIVGGTNMSEQRGALRSGVQIVVATPGRLI 168

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++    N+S +  VVLDEAD MLD+GF   I  +L + PK  + L+FSAT+   +  L
Sbjct: 169 DHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMNLPKPHQTLLFSATMPSEVEAL 228

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAK------NA 247
           A +Y    V+V + + +   +++      V  +++ + +V +L   +    K        
Sbjct: 229 ASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAEKVDRLVTMLIGEQREAMKLGQDMPMT 288

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F   +       ++L        AL G  SQ ER  AL   + GR  V +ATDVAARG
Sbjct: 289 VIFVERKNRADEIAELLNAENVPAAALHGGRSQGEREAALHDYKTGRCSVLVATDVAARG 348

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  +  V++ +L  N E+ +HR GRTGRAG  G S 
Sbjct: 349 LDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRST 386


>gi|13542134|ref|NP_111822.1| RNA helicase [Thermoplasma volcanium GSS1]
          Length = 376

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/353 (33%), Positives = 191/353 (54%), Gaps = 16/353 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   + E++   GY   T VQ   +   L   D++V ++TGSGKT A+ + +
Sbjct: 4   MKGFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    E           AL + PTRELAVQV +  E L  ++G+   V  GGVS++++ 
Sbjct: 64  INNTAKE-------KGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  GA+I+VGTPGR  D I    LN   +   VLDEADEMLD+GF +DI+ I++  P 
Sbjct: 117 ELILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPV 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSATI   I  LAK +  +   + ++ +    + ID+     A+S R+  +  +
Sbjct: 177 ERQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHN---YAVSRRERKLRTL 233

Query: 239 LRY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             Y   +  + +I+F  T+A  +   + L  H    V + G+L+Q +R  AL   ++   
Sbjct: 234 FSYIDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRFKN-FG 292

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R  +AT+VAARG+D+  +  +I+ ++  +P   +HR GRT R G  G +  ++
Sbjct: 293 RFLVATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIV 345


>gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 442

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 186/349 (53%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+         +
Sbjct: 68  -DYPRRKPG-APRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+++     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R  V   ++ L +   +   L G+++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEKVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 184/349 (52%), Gaps = 15/349 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           VI   L +  Y   T +Q+  +   +  +D++  AQTGSGKT +F L + + +L     F
Sbjct: 527 VIMTNLRKTKYEKPTPIQKWAVPVIISGRDMMGCAQTGSGKTASFLLPMLTKMLGTG--F 584

Query: 70  SP------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            P       + PL L +APTREL +Q+  E       T V   V  GGVS   + +++  
Sbjct: 585 EPPCVEDGCAMPLMLVLAPTRELVLQIFHETRKFSFDTVVRAVVAYGGVSSSYQEKEILK 644

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SP 177
           GAHIV+ TPGRL D    K +N+  LK +VLDE D MLD+GF   I  IL        S 
Sbjct: 645 GAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILSQGESGMPSV 704

Query: 178 KKRRMLMFSATISPAITTL-AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             R+ ++FSATI   +  L AK  ++D + + +      + DI+   +L+   ++ + ++
Sbjct: 705 NNRQTVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQYVLLMEQENKRDKLL 764

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I++  G    IV    +      +  L++  F   ++ G L+QQER  AL+  R G + 
Sbjct: 765 EIVQKRGEDKIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKALRDFRSGVSP 824

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +AT+VAARG+D+P+++ VI+ ++  + E  +HR GR GR G  G + 
Sbjct: 825 ILVATNVAARGLDIPEVKHVINYDMPPHIEEYVHRIGRPGRCGNTGKAT 873


>gi|156395780|ref|XP_001637288.1| predicted protein [Nematostella vectensis]
 gi|156224399|gb|EDO45225.1| predicted protein [Nematostella vectensis]
          Length = 412

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 171/326 (52%), Gaps = 1/326 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +++   +   
Sbjct: 39  NLKEALLRGIYAYGFEKPSAIQQRAIRPCCQARDVIAQAQSGTGKTATFAISILQEIDTN 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL +APTRELA Q+ + +  L     V    CIGG +V  +R  L+ G 
Sbjct: 99  YKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGV 158

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I    LN   +K  VLDEADEML  GF+D I  +    P   ++++ 
Sbjct: 159 HVVVGTPGRVFDMINRGVLNTRDIKLFVLDEADEMLSRGFKDQIYDVFTRLPTSVQVVLL 218

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +   + +D VR+ +  E      I    VLV   D + + + ++      
Sbjct: 219 SATMPTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYETLTI 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F +TR  V      + E    V ++ G++SQ+ER   ++  R G +RV I TD+ 
Sbjct: 279 TQAVIFANTRRKVDWLAAKMTEKDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLL 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 339 ARGIDVHQVSLVINYDLPSNRENYIH 364


>gi|152988314|ref|YP_001347045.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963472|gb|ABR85497.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 441

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/358 (35%), Positives = 197/358 (55%), Gaps = 17/358 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L  +D+ V+AQTGSGKT AF L L +
Sbjct: 1   MFSQFPLHERLLKALDSLSFSEPTPVQAAAIPQALEGRDLRVTAQTGSGKTAAFLLPLLN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE     P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 61  RLLAEE---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IV+GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIVIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 232

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 233 LLQWLLGNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 292

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 293 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHN 350


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 194/383 (50%), Gaps = 16/383 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRF 69
           + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N +R 
Sbjct: 146 LAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNNLNRA 205

Query: 70  SPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            P    +AP AL ++PTREL++Q+  E      +TG    V  GG     +  +L  G  
Sbjct: 206 KPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELTRGCG 265

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PKKR 180
           ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         P +R
Sbjct: 266 LLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPPPGER 325

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L++SAT    I  +A+ +      + +        +I      V   D+   ++ +L+
Sbjct: 326 QTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLLEVLK 385

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  RV +A
Sbjct: 386 EHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCRVLVA 445

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--R 358
           TDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++    +N     +   
Sbjct: 446 TDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFNDKNRNIVDDLIP 505

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L RE N +V+    P V+A+ ++
Sbjct: 506 LLRETNQTVL----PEVQALAKK 524


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 185/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P+V+   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PEVLA-GLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHPL 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N R    + P A+ +APTRELAVQ+  + + + A TG+ + +  GG    ++   L+ G
Sbjct: 77  SNPRL--VNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRM 182
             I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+     +P +R  
Sbjct: 135 VDILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLS 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +      V I  E      I       +  D+   +++++   
Sbjct: 195 MLFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELFYPSNEDKMLLLLSLMEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 315 VAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSI 357


>gi|150866225|ref|XP_001385748.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|158514828|sp|A3LX02|SPB4_PICST RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|149387481|gb|ABN67719.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 617

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 195/370 (52%), Gaps = 32/370 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRF 69
           I EA++  G+  +T VQ A +      KDV+V A TGSGKT+AF + +   +     D  
Sbjct: 21  IKEAIASLGFPTMTPVQAATIPLLSGNKDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQ 80

Query: 70  SPASAP--------LALAIAPTRELAVQV----GRELEWLYA-KTGVVVAVCIGGVSVHR 116
               AP        LA+ ++PTRELA Q+       +E+L   K  +   + +G +S  R
Sbjct: 81  EEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVR 140

Query: 117 ERRD--LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +  D  L++  HI++ TPGR+ D +  + + ++ ++  +LDEAD++LD  F  D+  IL 
Sbjct: 141 DDLDRFLKDKPHILIATPGRMLDFMSSQYVKMNSVEIAILDEADKLLDFSFEKDVVNILK 200

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSD 230
             PK+RR  +FSATIS A  T+ +    + V+V + S+    N   S +    +++    
Sbjct: 201 RLPKQRRTGLFSATISAAGNTIFRAGMNNPVKVAVKSKSTTANSAPSALHISYLMIEPEK 260

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--------FQVVALSGELSQQE 282
           +   ++ +L  +  K  IV+  T  SV  F  +  + +        F+  +L G+L+ + 
Sbjct: 261 KITTLIKLLHDYRYKKCIVYFPTCTSVKHFYSIFQKIVNGNDNTESFKFYSLHGQLATKP 320

Query: 283 RSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           R   LQ   DG       + + TDVAARGID+PD++LVI  +  ++P+  LHR GRTGRA
Sbjct: 321 RLRTLQSFTDGDVALNKHILMTTDVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRA 380

Query: 339 GRKGMSVFVI 348
            + G ++ ++
Sbjct: 381 NKVGRAIVML 390


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 17/372 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  A+ + GY   TS+Q+  +   +  +D+L SA TG+GKT AF L     LL +
Sbjct: 7   DLDKKILNAIDKAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSIQYLL-D 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA Q+  +     A T + + V  GG++    +   +   
Sbjct: 66  FPRRDPGFARV-LIMTPTRELAYQIHEQCVLFAANTHLKIGVVTGGINYGSHKDIFEKNN 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D+++ +  +  +++ ++LDEAD MLD+GFR ++  I D +  +R+  +F
Sbjct: 125 DILIATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQCFLF 184

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----ILR 240
           SAT+   ++   A     D   +   S  ++   I      V L+D  N  ++    IL+
Sbjct: 185 SATLEGDSVERFADTILNDPALLEAESSRKEQGKI---LQWVHLADSRNHKLDLLEAILK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AIVF  TR  +     +L     +   L GE+ Q +R  A+   + GRA + +A
Sbjct: 242 AEDMSKAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-------IPQNMQ 353
           TDVAARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ +       I + ++
Sbjct: 302 TDVAARGIDVTDISHVINYDMPRTADIYVHRIGRTGRAGKKGVAISLVEAHDVGILKKIE 361

Query: 354 RRAERLFREANV 365
           R  E+  +  N+
Sbjct: 362 RYTEQNLKRRNI 373


>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
          Length = 615

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 181/338 (53%), Gaps = 3/338 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P 
Sbjct: 104 KAIRKSEYSQPTPIQAQAIPAALGGRDIIGIAKTGSGKTAAFLWPMLVHIMDQRE-LGPG 162

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA IVV TP
Sbjct: 163 DGPIGLILAPTRELSLQIYGEAKKFGKVYNISVCCCYGGGSKWEQSKALEQGAEIVVATP 222

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD+M ++GF   +  I +     R+ L+FSAT    
Sbjct: 223 GRMIDMVKMKATNLRRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQTLLFSATFKKR 282

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIVNILRYHGAKNAIVF 250
           +  LA++   D VR+        ++D+  R VL+    +  +  + N+++     + ++F
Sbjct: 283 VEKLARDVLTDPVRIIHGDLGEANADVAQRVVLLPNVQAKWNWLLANLVQMLSEGSVLIF 342

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +A   +    L     +VV L G++ Q ER++ +   +     + +ATDVAARG+D+
Sbjct: 343 VTKKADAEQVANSLRVKENEVVLLHGDMDQSERNSVITRFKRREVDMMVATDVAARGLDI 402

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P +  V++ +++ + +   HR GRTGRAG KG +  +I
Sbjct: 403 PHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLI 440


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/356 (31%), Positives = 193/356 (54%), Gaps = 9/356 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +AL +  + + T VQE  +   L+ +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFEELNLSNDILDALYDMNFEDCTPVQEKCIPEILKGRDLMGVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHR-- 116
           S +   N    P ++   + ++PTRELA Q+ + ++        V +V + GG   +R  
Sbjct: 61  SMIDEGN---YPKNSVNCVIMSPTRELAQQIDQAMQGFAYHLDTVSSVAVYGGNDGNRYD 117

Query: 117 -ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            E + ++ GA +++ TPGRL  HI    +++  +   VLDEAD MLD+GF DDI  I   
Sbjct: 118 QEMKSMRLGADVIIATPGRLISHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASY 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  + +MFSAT+   I  +A+N  K+   V +A  ++    I   A +   + +   I
Sbjct: 178 LPKNCQTIMFSATMPNDIEKMAQNLLKNPAEVKLAV-SKPAEKIKQSAYVCYTTQKIEII 236

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I +    K  I+F  ++  V +  + LA+       +  +L Q +R + +   + G+ 
Sbjct: 237 KHIFKAGDLKRVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQI 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            V +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ ++ ++
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPRDSEDYVHRIGRTARADRDGVAITLVNED 352


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/380 (32%), Positives = 195/380 (51%), Gaps = 13/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS  G      +Q A L   L  +D+L   +TGSGKT+AFGL L   L   
Sbjct: 34  ELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPL---LTRT 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG+S+ R+  +L+ GA
Sbjct: 91  AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELRQGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      +  ++  VLDEAD+M DLGF   +  +LD   P  +RML 
Sbjct: 151 EVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQRML- 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L +    D V  ++       + +++  ++V   DR      I    G 
Sbjct: 210 FSATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYAVTTEIAARDG- 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VA
Sbjct: 269 -RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVA 327

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A 
Sbjct: 328 ARGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRMMAGAG 387

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           +       P+V  +R  +A+
Sbjct: 388 IE------PTVTRVRSGEAE 401


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 183/361 (50%), Gaps = 10/361 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +V+   L+E  Y N T +Q+  +   +  KD++ SAQTGSGKT AF L + ++L++E   
Sbjct: 231 EVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILNSLISEPSE 290

Query: 69  F---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L ++PTRELA Q+      L   T +      GG +V+ +R  + +G 
Sbjct: 291 LVFDYNHCEPQCLILSPTRELASQISSFAFKLSNGTSIRCRALYGGTAVYHQREKILSGV 350

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRR 181
           HI+V TPGRL D +    +  S L+ +VLDEAD MLD+GF   I+ I       S  +R 
Sbjct: 351 HIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCIFSDNTMVSSAERS 410

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL- 239
            LMFSAT+   +  +AK+Y K D + V +        D+    V V    + N +V +L 
Sbjct: 411 TLMFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFSKKNELVALLN 470

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  IVF   +         L+E  +   ++ G+  Q ER  AL+  +  + +V +
Sbjct: 471 ETNDCQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRDFKTKKMKVLV 530

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAER 358
           AT VAARG+D+  +  V++ +L    E  +HR GRTGR G  G +V F  P N    A  
Sbjct: 531 ATAVAARGLDIMGVTTVVNFDLPKTIEEYVHRIGRTGRLGNSGRAVSFYDPDNDSAMAPY 590

Query: 359 L 359
           L
Sbjct: 591 L 591


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            +   + +APTRELA Q+ +++E   +    + V V     GV   +++R L  GA +V+
Sbjct: 71  DSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LAK+   +   V +A        +  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLAKSILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIIRSLFAEQTPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQ 353


>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 198/377 (52%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++ + ++E  Y+  T +Q   +   L  KD+L  A TGSGKT AF L +   L   +
Sbjct: 21  IPELL-QRIAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFALPILQHLHVGD 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVHRERRDLQN 123
              +  +   AL + PTRELA QV    +  YA+     + V    GGVSV+ +   L+ 
Sbjct: 80  KPVAKGNMVRALVLVPTRELAKQVAASFKS-YAQGLTPKLKVEAVFGGVSVNTQMLALRG 138

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA ++V TPGRL D +    + +S    +VLDEAD ML LGF +++E +L   PK+++ L
Sbjct: 139 GADVLVATPGRLLDLLSSNAIKLSQASHLVLDEADRMLSLGFAEELEKVLALLPKRKQTL 198

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  L  +     V +++  E+ + S +  +   V  + +   + +++    
Sbjct: 199 LFSATFPEEVKELTDSLLNSPVELHL--ESTEESTLVQQVYTVNKNRKTALLAHLINERN 256

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF S + + +R  + LA+          + SQ  R+  L   + G   V IATD+
Sbjct: 257 WRQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTRVLDGFKSGEISVLIATDI 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++ 
Sbjct: 317 AARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQHFKLIEKKN 376

Query: 364 NVSVVWEPAPSVEAIRE 380
            + +V E     EA  E
Sbjct: 377 KIRLVREQIVGFEADEE 393


>gi|15807648|ref|NP_295347.1| RNA helicase [Deinococcus radiodurans R1]
          Length = 560

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 151/260 (58%), Gaps = 3/260 (1%)

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL DH+    L++S ++  VLDEADEML +GF D IE IL  +P++R+ ++FS
Sbjct: 3   VVVGTPGRLIDHLERGNLDLSAVQFAVLDEADEMLSVGFADAIETILQKTPEERQTMLFS 62

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT++  I  L++NY KD + V++  E +  +   +++  V V  S R   + ++L  +  
Sbjct: 63  ATLNNDIKRLSRNYLKDPLIVDMVGEGKSQAAQTVEHLKVKVGRS-RTRVLADLLTVYNP 121

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  T+         L     +  AL G+L+Q +R  AL   R GR  V +ATDVA
Sbjct: 122 EKAIVFTRTKREADELANELIHRGLESEALHGDLAQTQRERALGAFRSGRVGVLVATDVA 181

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +      R    L R   
Sbjct: 182 ARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGLERITG 241

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           V     P P+   + +  A+
Sbjct: 242 VRFKERPLPTPSEVAQASAR 261


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score =  180 bits (456), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 182/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|332026541|gb|EGI66659.1| Eukaryotic initiation factor 4A-II [Acromyrmex echinatior]
          Length = 423

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 176/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSIS----ILQQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 112 ID--TSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    V V   D +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIH 375


>gi|291438689|ref|ZP_06578079.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341584|gb|EFE68540.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 689

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 188/363 (51%), Gaps = 5/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   
Sbjct: 111 GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGG 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 171 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGV 227

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 228 DILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLF 287

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL   Y  D V   + +     + + +  ++V   D+      I    G  
Sbjct: 288 SATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAIASRKG-- 345

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 346 RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 405

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 406 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQIFRLMEDAGV 465

Query: 366 SVV 368
             +
Sbjct: 466 DAM 468


>gi|223590193|sp|A5DLE0|DBP8_PICGU RecName: Full=ATP-dependent RNA helicase DBP8
 gi|190347673|gb|EDK39993.2| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/354 (33%), Positives = 193/354 (54%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+     + TS+Q   +   L  +D +  A+TGSGKT+AF   + +      D F   
Sbjct: 14  EALAAMKIRSPTSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKW--SEDPF--- 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+Q+  +   L A   + VAV +GG  + ++  ++Q   H ++ TP
Sbjct: 69  -GIYGLVLTPTRELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHFIIATP 127

Query: 133 GRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLMFS 186
           GRL DHI   G +    +  +K +VLDEAD +L   F  D+E  F +     KR+ L+F+
Sbjct: 128 GRLADHILNSGDDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPDASKRQTLLFT 187

Query: 187 ATISPAITTL----AKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL- 239
           AT++ A+  L        +K      I S+++    + +    V V    ++  + NIL 
Sbjct: 188 ATVTDAVRALKDKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILV 247

Query: 240 --RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +Y  A +AIVF +   +     + L +   +V +L  E+ Q ER+N+L   R G ARV
Sbjct: 248 SPKYEKA-SAIVFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            IATDVA+RG+D+P++ELV++ ++ ++P++ +HR GRT RAG+KG SV ++ + 
Sbjct: 307 LIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEK 360


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  +DV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 16  LQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT +  I 
Sbjct: 135 LLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARRQTLLFSATFTDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A N  +  V ++++  N   S I    V V   ++    ++++  +   +A+VF  TR
Sbjct: 195 AMAANILRAPVNISVSPPNATASKIRQWVVTVDKRNKPELFMHLVAENNWDHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           + V      L E  + V  + G+  Q  R  AL+  +     + +ATDVAARG+D+ DL 
Sbjct: 255 SGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 LVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 377 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 436

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 437 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 496

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 497 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 556

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 557 PDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 616

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   VA  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 617 TVEQRVEFVAGEDKRKKRLAEILTSRDYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 676

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 677 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 736

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 737 GRAGKSGVAITFL 749


>gi|239995669|ref|ZP_04716193.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
          Length = 408

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A ++ G+   TS+QE ++   L  +D+L SA TG+GKT AF L  A   L +  R
Sbjct: 10  EALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLP-ACQFLLDYPR 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P +  + L + PTRELA+QV  +   +   T +V  V  GG++   ++  L     I+
Sbjct: 69  RQPGATRI-LILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKETLSKNLDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  +++ L+FSAT
Sbjct: 128 VATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQNLLFSAT 187

Query: 189 IS-PAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKN 246
           +    + T A +   +   +      ++ + I  +  +   ++ +   +VNIL+     +
Sbjct: 188 LEGKGVKTFAHDILNNPEVIEANPSRKEKNKIHQWYHLADDMNHKQALLVNILKQETTTS 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR  +      LA     V  L GE+ Q +R  AL   + G   + +ATDVAAR
Sbjct: 248 AVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPILLATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+P++  VI+ ++    +  +HR GRTGRAG KG ++ ++
Sbjct: 308 GIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLV 349


>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
 gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans]
          Length = 433

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 197/363 (54%), Gaps = 21/363 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EAL        T++Q+A +   L+ KD +  A+TGSGKT+AFG  +  T  +E+
Sbjct: 10  ISKWLVEALQAMKITQPTAIQKACIPQILQGKDCIGGAKTGSGKTIAFGAPML-TKWSED 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S    + + PTRELA+Q+  +   L +   + VA+ +GG S+  +  +LQ   H
Sbjct: 69  -----PSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAINLQRKPH 123

Query: 127 IVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKR 180
            +V TPGR+  HI   G +    +   K +VLDEAD +L   F + +   +   P  +KR
Sbjct: 124 FIVATPGRMAHHIMNSGEDTIGGLKRAKFLVLDEADILLTDTFSEHLATCISILPPKEKR 183

Query: 181 RMLMFSATISPAITTL----AKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNA 234
           + L+F+AT++  +  L    A   +       + S ++    S +    +LV    ++  
Sbjct: 184 QTLLFTATVTDQVKALQNAPAAEGKPPLFSYEVESMDKVAIPSTLKTTYLLVPEQVKEAY 243

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +  IL    +   +AI+F +   +     + L +   +V +L  ++ QQER+N+L   R 
Sbjct: 244 LYQILTNATYNESSAIIFVNRTVTAEILRRTLKQLDVRVASLHSQMPQQERTNSLHRFRA 303

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             ARV IATDVA+RG+D+P ++LVI+ ++SSNP+  +HR+GRT RAGR G S+ FV P++
Sbjct: 304 NAARVLIATDVASRGLDIPTVQLVINYDISSNPDTFIHRAGRTARAGRSGESICFVAPRD 363

Query: 352 MQR 354
           + R
Sbjct: 364 VSR 366


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 191/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 369 LPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGELP 428

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+
Sbjct: 429 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYSLR 488

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 489 NGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEK 548

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 549 PDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVD 608

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   V+  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 609 TVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 668

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 669 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 728

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 729 GRAGKSGVAITFL 741


>gi|170046083|ref|XP_001850610.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
 gi|167868981|gb|EDS32364.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
          Length = 516

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 183/359 (50%), Gaps = 30/359 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L + G    T +Q+A +   L  +D + +A+TGSGKT AF L +   L  E     
Sbjct: 18  ITKQLEKLGLRRPTPIQQACIPRILDGQDCIGAAKTGSGKTFAFALPILQRLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             ++  AL + PT ELA Q+  +        GV V V  GG     E + LQ   HIVV 
Sbjct: 73  -PTSNFALILTPTHELAYQIAEQFSVAGQPMGVKVCVVTGGTDQLLEAQRLQARPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL  H+ G    +   L+ +V+DEAD +L   F +D+E I    P+KR+ L FSAT+
Sbjct: 132 MPGRLAAHLTGCNTYSFRALQFLVVDEADRVLSGSFDEDLEAIKRFLPEKRQNLFFSATL 191

Query: 190 SPAITTLAKNYQKDAVRVNIA---------SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                   K + +++    IA         SE      +D R +L A  DRD  ++  LR
Sbjct: 192 --------KEFMRESSVFPIAGGAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLR 243

Query: 241 YHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +    N I+F +++      +  L +  F  V L G L Q+ER  AL   +    R
Sbjct: 244 KFKEEKEDANVIIFTNSKKDCQVLSLTLNKIGFDNVCLHGFLRQKERVAALNRFKSKHVR 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQ 353
           + IATDVA+RG+D+P+++LV++  L   P   +HR GRT RAGRKG+  S+F  P++++
Sbjct: 304 ILIATDVASRGLDIPNVQLVLNHRLPKVPNEYIHRVGRTARAGRKGLAISIFRFPRDLE 362


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 295 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 354

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 355 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 414

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 415 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 474

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 475 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 534

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 535 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 594

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 595 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 295 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 354

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 355 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 414

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 415 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 474

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 475 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 534

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 535 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPV 594

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 595 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 13/321 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S   A      P  A         P A+ +APTRELA 
Sbjct: 187 RDLMACAQTGSGKTGGFLFPVLSESFANGPAPVPEQASNFYIKKAFPTAVVLAPTRELAT 246

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + ++L  G  ++V TPGRL D +    +++ +
Sbjct: 247 QIFDEAKKFTYRSWVRPCVVYGGADIGSQIKELNRGCDLLVATPGRLSDLLERGRISLCN 306

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I++     S  +R+ LMFSAT    I  LA+++ KD 
Sbjct: 307 IKYLVLDEADRMLDMGFEPQIRHIVEGCDMPSVDERQTLMFSATFPMDIQHLARDFLKDY 366

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V +++        +I    + V   D+ +A++++L        ++F  T+      T  L
Sbjct: 367 VFLSVGRVGSTSENITQHVLYVEDMDKKSALLDLLAASDDGLTLIFVETKRMADALTDFL 426

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
                +  A+ G+ SQ ER  AL   R G+A + +AT VAARG+D+P++  VI+ +L ++
Sbjct: 427 IMQNLRATAIHGDRSQSERERALAAFRSGKASLLVATAVAARGLDIPNVTHVINYDLPND 486

Query: 325 PENLLHRSGRTGRAGRKGMSV 345
            ++ +HR GRTGRAG  G++ 
Sbjct: 487 IDDYVHRIGRTGRAGNTGVAT 507


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 183/348 (52%), Gaps = 26/348 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +DV+  AQTGSGKT AF + + + +  +     PA+      
Sbjct: 215 YDTPTPVQKYAIPIIVGRRDVMACAQTGSGKTAAFLVPILNQIYEK----GPAAYNVGPK 270

Query: 75  -------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  PL L +APTRELA Q+  E +    ++ V   V  GG  V  + RDL+ G H+
Sbjct: 271 LQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYGGSHVMDQIRDLEQGCHL 330

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRML 183
           +V TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++      P  R+ L
Sbjct: 331 LVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIRRIVEKDSMPPPGDRQTL 390

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---- 239
           MFSAT    I  LA+++  + + + I        +I  + V V   ++ + ++++L    
Sbjct: 391 MFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWVEDRNKRSYLLDLLNATP 450

Query: 240 -RYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            R   A++ I VF  T+       + L  + + V ++ G+ +Q+ER +AL+  R G   V
Sbjct: 451 IRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQREREDALKSFRSGNTPV 510

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+P +  VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 511 LVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGNLGLAT 558


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 178/334 (53%), Gaps = 1/334 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      S   A
Sbjct: 16  LQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAVSSNRA 75

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L + PTRELA QV +          +      GGVS++ +   L+ G  ++V TPGR
Sbjct: 76  RV-LVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGR 134

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT +  I 
Sbjct: 135 LLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPARRQTLLFSATFTDDIR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A    ++ V ++++  N   S I    V V   ++    ++++  +  ++A+VF  TR
Sbjct: 195 AMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMHLVAENKWEHALVFVKTR 254

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           A V     +L E  + V  + G+  Q  R  AL+  +    ++ +ATDVAARG+D+ DL 
Sbjct: 255 AGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQMLVATDVAARGLDIDDLP 314

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +VI+ +L    ++ +HR GRTGRAG  G++V ++
Sbjct: 315 MVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLV 348


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 8/347 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T +Q       L  +DV+  A+TGSGKT   G  L   +  +  + S  S P  L
Sbjct: 31  GFPSPTPIQAQSWPIALLNQDVVAIAKTGSGKT--LGYLLPGFMHIKRMQNSTRSGPTVL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA Q+  E    + ++  + + C+ GG     + RDL+ G  +VV TPGRL D
Sbjct: 89  VLAPTRELATQILEEA-VKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGRLND 147

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + +++  +  +VLDEAD MLD+GF   I  I+   P  R+ LM++AT    +  +A
Sbjct: 148 ILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVRRIA 207

Query: 198 KNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTR 254
                  V+V I S  E   +  I     ++  S++   +  ILR H + + I +FC+T+
Sbjct: 208 DELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFCTTK 267

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               + ++ L    F   A+ G+ SQ ER   L   R GRA + +ATDVAARG+D+ D+ 
Sbjct: 268 RMCDQLSRTLNRQ-FGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKDIR 326

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VI+ +  +  E+ +HR GRTGRAG  G++   +     + A  L +
Sbjct: 327 VVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIK 373


>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 174/324 (53%), Gaps = 6/324 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +    R +D++  AQTG+GKT AF L L   L A      P     A+
Sbjct: 20  GYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKLSA-----GPRGRVRAV 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   +  L  +TG+      GGVS   + +  + G  I+V  PGRL DH
Sbjct: 75  IVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFKAGVEIIVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + +N+  ++ +VLDEAD M D+GF   I+ +L   P KR+ L+FSAT+   I  LA 
Sbjct: 135 LDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLFSATMPAEIRHLAD 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +  KD  RV I +  +  + + ++   V    +   +  +++     +A+VF  T+ +  
Sbjct: 195 SILKDPARVQI-NHTQPTALVAHKLYRVEKQGKGALLKQVMQESAFSSALVFTRTKHAAK 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +    L +   + VAL G +SQ +R  A++  + GR  + +ATD+AARGID+  +  VI+
Sbjct: 254 KLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAARGIDVAGISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKG 342
            ++ +  E   HR GRTGRA R G
Sbjct: 314 YDMPATVEAYTHRIGRTGRAERNG 337


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 275 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 334

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 335 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 394

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 395 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 454

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 455 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 514

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 515 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRYGKCPV 574

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 575 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 622


>gi|290959211|ref|YP_003490393.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
 gi|260648737|emb|CBG71850.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
          Length = 765

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 187/361 (51%), Gaps = 5/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L + L   +
Sbjct: 42  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQLAGGH 101

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 102 ---TERKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ + +  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 159 ILVATPGRLRDIINRGACSLENTQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 219 ATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIVKPKDKAPVTAAIASRKG--R 276

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 277 TIIFVRTQLGADRIAEQLRDSGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 336

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 337 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 396

Query: 367 V 367
            
Sbjct: 397 A 397


>gi|302786768|ref|XP_002975155.1| hypothetical protein SELMODRAFT_174634 [Selaginella moellendorffii]
 gi|300157314|gb|EFJ23940.1| hypothetical protein SELMODRAFT_174634 [Selaginella moellendorffii]
          Length = 440

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 118/341 (34%), Positives = 189/341 (55%), Gaps = 17/341 (4%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIA 81
           +T VQEA L   L+ +DVL  A+TG+GKT+AF L    T+LA  +  +    P+ AL I 
Sbjct: 1   MTMVQEATLPLILKGEDVLAKAKTGTGKTIAFLLPTIETILASKNAQTYHENPIRALVIC 60

Query: 82  PTRELAVQVGRELEWL---YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           PTRELA+Q   E + L   + + G   A+  G  SV   ++       I+VGTPGRL DH
Sbjct: 61  PTRELAMQAAVEAQTLMKFHNELGAQTAIG-GNSSVMEAKKIKLQPCQILVGTPGRLLDH 119

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           I   RG    +  +K ++LDEAD +LD+GFR ++  IL + PKKR+ L+FSATI   + +
Sbjct: 120 IQNARGFADQLKSVKILILDEADTLLDMGFRQNLTEILKALPKKRQTLLFSATIPKEVHS 179

Query: 196 LAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA----KNAIV 249
           +++   K   +    +  +   H+ ++ +  +V    +   + +IL+ H A       +V
Sbjct: 180 ISQLALKPDHKFVDTVGQDTETHAMVNQKYAVVPQESQFAVLYSILKEHIAVEPKYKVLV 239

Query: 250 FCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT-DVAARG 307
           FC+T A+++ +   L + L F +  +    +Q  R+      R+ +  + + T DV+ARG
Sbjct: 240 FCTT-ANITAYMAALYQKLGFNIREIHSRKTQTYRTRVSDEFRNCKGGLIMFTSDVSARG 298

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID PD+ LV+   + +  E  +HR GRTGRAG++G  V ++
Sbjct: 299 IDYPDVTLVVQIGVPAAREQYIHRLGRTGRAGKEGQGVLIL 339


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 182/342 (53%), Gaps = 16/342 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE------NDRFSPAS 73
           Y   T VQ+  +   + ++DV+  AQTGSGKT AF + + + +         + R     
Sbjct: 235 YDTPTPVQKYAIPIIVGKRDVMACAQTGSGKTAAFLVPILNQMYEHGPPNITHGRSRRKQ 294

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            PL L +APTRELA Q+  E +    ++ V   V  GG  +  + RDL  G H++V TPG
Sbjct: 295 YPLGLVLAPTRELATQIYDESKKFAYRSRVRPCVVYGGAHIGDQMRDLDRGCHLLVATPG 354

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFSATI 189
           RL D I    + + + + +VLDEAD MLD+GF   I  I+  ++ PK  +R+ LMFSAT 
Sbjct: 355 RLLDMIDRGRIGLDYCRYLVLDEADRMLDMGFELQIRRIVEKETMPKTGERQTLMFSATF 414

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------RYHG 243
              I  LA+++  + + + +        +I  + V V   D+ + ++++L      +   
Sbjct: 415 PSPIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDLLNAAEMSQPSA 474

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+       + L    + V ++ G+ SQ+ER +AL+  R G   + +AT V
Sbjct: 475 ESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQREREDALRQFRSGNTPILVATAV 534

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 535 AARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLGLAT 576


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 182/341 (53%), Gaps = 3/341 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P+ +   +   G+   T +Q       L  +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 119 SFPEYVLAEVIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAY-LLPAVVHINA 177

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELAVQ+ +E +   + + +   V  GG     + RDL++G 
Sbjct: 178 QPYLQPGDGPIVLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQARDLRSGV 237

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+D     R+ L++
Sbjct: 238 EIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLLW 297

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           SAT    +  +A+++ K+  +V I S E + + +I     +V    +   +  +L     
Sbjct: 298 SATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVEMVEGYAKYPRLRKLLDTEMD 357

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++FC T+       + L    +  + L G+ SQQER   LQ  ++G   + +ATDV
Sbjct: 358 GRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDV 417

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           AARG+D+ D+++V++ ++    E+ +HR GRTGRAG  G +
Sbjct: 418 AARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGAHGTA 458


>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
          Length = 1013

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 364 EVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLADG 422

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 423 DGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 482

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 483 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 542

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V V +   +    D++   V++    +   ++ IL  Y    + I
Sbjct: 543 PRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSTI 602

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 603 IFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGL 662

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ V
Sbjct: 663 DVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAGV 722

Query: 369 WEPAP 373
             P P
Sbjct: 723 PVPEP 727


>gi|297834766|ref|XP_002885265.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331105|gb|EFH61524.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 569

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 180/345 (52%), Gaps = 7/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     LL  +  FSP +
Sbjct: 108 AIKEMGFQYMTQIQAGSIRPLLEGKDVLGAARTGSGKTLAFLIPAVELLLKHH--FSPRN 165

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I PTRELA+Q     E L       V + IGG +   E + + NG+++++ TPG
Sbjct: 166 GTGVIVICPTRELAIQTKNVAEELLKHHSQTVGMVIGGNNRRSEAQRIANGSNLLIATPG 225

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH+   K     HLK +V+DEAD +L+  F +D+  IL   PK R+  +FSAT +  
Sbjct: 226 RLLDHLHNTKAFIYKHLKCLVIDEADRILEDNFEEDMNKILKILPKTRQTALFSATQTSK 285

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +  LA+      V V++    R+ ++  ++    +V   +R   ++  L+ +  K  +VF
Sbjct: 286 VKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKNRLILLITFLKKNPNKKIMVF 345

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST  SV    +++         + G L Q  R+         +  + + TDVAARG+D+
Sbjct: 346 FSTCKSVQFHAEIMKISNVDFCDIHGGLDQNRRTKTFFDFMKAKKGILLCTDVAARGLDI 405

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFV-IPQNMQ 353
           P ++ +I  +    P   +HR GRT R  G KG ++ V IP+ +Q
Sbjct: 406 PSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ 450


>gi|322799953|gb|EFZ21079.1| hypothetical protein SINV_07394 [Solenopsis invicta]
          Length = 423

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 176/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSIS----ILQQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 112 ID--TTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    V V   D +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIH 375


>gi|284029039|ref|YP_003378970.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283808332|gb|ADB30171.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 715

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 180/353 (50%), Gaps = 5/353 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G      +Q A +   L  KDVL   QTGSGKT+ FGL    TL+      + +  
Sbjct: 283 LARDGITAPFPIQTATIPDALAGKDVLGRGQTGSGKTLGFGLP---TLMRLAGGHTESRR 339

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+QV   LE L    GV V +  GG+   ++   L+ G  +++ TPGR
Sbjct: 340 PRGMILVPTRELAMQVHDALEPLAHVMGVSVKLIAGGLPYPKQIDALRRGVDLLIATPGR 399

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D       ++  ++  VLDEAD M D+GF   +  +LD +PK+ + L+FSAT+   + 
Sbjct: 400 LIDLCEQGAADLGAVEVAVLDEADHMCDMGFMPAVTTLLDMTPKEGQRLLFSATLDNDVD 459

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           T+ K Y KD V  +  S     + +++  +++    + +    +    G    I+F  T+
Sbjct: 460 TIVKTYLKDPVTHSTESGQASVTTMEHHLLVIEPGHKQSLTAELASRDG--RTIIFVRTK 517

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R    L +      AL G L+Q  R+  L   +DG   V +ATDVAARGI + D+ 
Sbjct: 518 LGADRVATQLRDRGVMAAALHGGLTQGARNRTLDQFKDGSVPVLVATDVAARGIHVDDVG 577

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           LV+ A+  +  ++ LHR+GRT RAG KG  V ++  + +R   R+   A V  
Sbjct: 578 LVVQADPPAEHKDYLHRAGRTARAGGKGAVVTLLLPHQRRGMIRMAESAGVDT 630


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 376 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 435

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 436 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 495

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 496 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 555

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 556 PDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 615

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   VA  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 616 TVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 676 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 735

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 736 GRAGKSGVAITFL 748


>gi|167846330|ref|ZP_02471838.1| ATP-dependent RNA helicase [Burkholderia pseudomallei B7210]
          Length = 347

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/311 (37%), Positives = 170/311 (54%), Gaps = 20/311 (6%)

Query: 75  PLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P  L + PTRELA+QV       G+ L  L   +       +GGV+  ++   L     I
Sbjct: 4   PGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVS------ILGGVAYGQQLMLLAKNPEI 57

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH+    +++S LK +VLDEAD MLD+GF DDI+ I+ ++P  R+ ++FSA
Sbjct: 58  LVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSA 117

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKN 246
           T+   I +L     KD  R+ I  +    S+I      V   D +D  + ++LR      
Sbjct: 118 TLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHYVDDRDHKDRLLDHLLRDVALDQ 177

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F +T+    +    LA+  FQ  AL G+L Q  R+  ++ +R+ R RV +ATDVAAR
Sbjct: 178 AIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARNRTIRALRERRVRVLVATDVAAR 237

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFR-- 361
           GID+P +  V + +L    E+ +HR GRTGRAGR G +V ++    Q   +R ER  R  
Sbjct: 238 GIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSLVHHAEQGALKRIERFVRAP 297

Query: 362 -EANVSVVWEP 371
              NV   +EP
Sbjct: 298 LPVNVVEGFEP 308


>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 441

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 175/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+    + S  
Sbjct: 17  DALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +     A T + VA   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    D V +      R+   I    YRA  V    +   + + L+      +I
Sbjct: 195 AIKDFAERLLNDPVEIESDPSRRERKKILQWYYRADDV--KHKTALLCHQLKQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 IFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG ++  +
Sbjct: 313 DINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFV 352


>gi|149639807|ref|XP_001507068.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Ornithorhynchus anatinus]
          Length = 742

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 214/409 (52%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   +  KD+   A TG+GKT AF L +   L+  
Sbjct: 170 NLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVLERLI-- 227

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L+ 
Sbjct: 228 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRA 284

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 285 GPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQT 344

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   V +      DR+  +
Sbjct: 345 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFVRIRPNREGDREAVV 400

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 401 SALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 460

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 461 DVLVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 520

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 521 LKEIVKTAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEM 569


>gi|323453007|gb|EGB08879.1| hypothetical protein AURANDRAFT_70153 [Aureococcus anophagefferens]
          Length = 306

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 155/268 (57%), Gaps = 1/268 (0%)

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           A+APTRELA Q+ + +  L     V +  C+GG +V  + R LQNG H+VVGTPGR+ D 
Sbjct: 6   AMAPTRELAQQIVKVMIALGDFMSVRIHACVGGTAVRDDIRTLQNGVHVVVGTPGRVYDM 65

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L ++  K   LDEADEML  GF+D I  +    P++ R+ +FSAT+   +  +  
Sbjct: 66  INRRALRLADTKIFALDEADEMLSRGFKDQIYDVFKFLPEQVRVALFSATMPLEVLEITS 125

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  +      I    + V   + + + + ++        AI++C+TR  V
Sbjct: 126 RFMQEPIRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTITQAIIYCNTRRKV 185

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 186 DWLTDGMTQKDFTVSAMHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 245

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N EN +HR GR+GR GRKG+++
Sbjct: 246 NYDLPTNRENYIHRIGRSGRFGRKGVAI 273


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 195/394 (49%), Gaps = 39/394 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L      ++ 
Sbjct: 231 NFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLP-GLVHISH 289

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
               S    P+ L +APTRELA Q+   +     ++K  +      GG     + RDL+ 
Sbjct: 290 QKPLSRGEGPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALKGPQVRDLER 349

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++L
Sbjct: 350 GVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQVL 409

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-----------------ENRQHSDIDYRAVLV 226
           M+SAT    + TLA+++ +D +++NI S                 EN +   +      +
Sbjct: 410 MWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKEGKLLKLLKEI 469

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           A SD  N I            I+F  T+  V    K +    +   ++ G+ SQ ER   
Sbjct: 470 ATSDATNKI------------IIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYV 517

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           LQ  R G++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +  
Sbjct: 518 LQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYT 577

Query: 347 VIPQNMQRRAERLFREANVSVVWEPA--PSVEAI 378
               N  R+A  L     +SV+ E    P+VE +
Sbjct: 578 FFTPNNGRQAREL-----LSVLEEAGQQPTVELV 606


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 145 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 204

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 205 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 264

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++      S +
Sbjct: 265 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKE 324

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 325 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 384

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 385 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 444

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 445 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 492


>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665577|emb|CAZ36311.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 454

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 210/395 (53%), Gaps = 25/395 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + +S  G+V  + +Q   +   LR+KD++  A+TGSGKT AF + +   LL      S
Sbjct: 15  ICDVISTLGWVKPSEIQLKAIPAALRKKDIVGLAETGSGKTAAFAIPILQDLL------S 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVV 129
                 AL + PTRELA+QV      L  K G+ V   +GG  V  + RDL+    H++V
Sbjct: 69  KPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQVRDLKRLKFHVIV 128

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+  H+   K L ++H++  VLDEAD+ML+  F   + FI+      ++  ++SAT
Sbjct: 129 GTPGRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIITKLHPNKQTFLYSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAK 245
           ++  +  + K   K  V + ++S+  +   +D+  V +   ++D  ++ +L   +     
Sbjct: 189 MTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFIPDKEKDFYLIYLLLSSKSADKS 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVA-----LSGELSQQERSNALQMMRDGRARVCIA 300
            +I+F ST     R   +L + L  V++     L+G + Q +R ++L   R GR  + +A
Sbjct: 249 RSIIFTSTWRESFRIVAML-KSLADVISAASAPLNGVMQQDKRQSSLFDFRTGRVSILVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNP------ENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           TD+A+RG+D PD++LVI+ ++   P      +  +HR GRT RAGR G ++ FV P ++ 
Sbjct: 308 TDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRAITFVTPYSVT 367

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
            R + +    N  +   P P  + +  +  Q+++Q
Sbjct: 368 -RLKAIESALNERIPQLPWPGTDCLDSQLRQQVIQ 401


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 198/367 (53%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E +   G+ + T +Q       L+ +DV+  A+TGSGKT   G  L   +  +  
Sbjct: 159 PEILKE-IQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKT--LGYLLPGFMHIKRL 215

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + +P S P  L +APTRELA Q+  E    + ++  + + C+ GG     + RDL  G  
Sbjct: 216 QNNPRSGPTVLVLAPTRELATQILEEA-VKFGRSSRISSTCLYGGAPKGPQLRDLDRGVD 274

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++
Sbjct: 275 VVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYT 334

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  +A++     V+V I S +    +S I     L+  S++   +  ILR   +
Sbjct: 335 ATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDS 394

Query: 245 KNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + + +FC+T+    +  + L    F   A+ G+ SQ ER   L   R GR+ + +ATDV
Sbjct: 395 GSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDV 453

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLF 360
           AARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++  F   Q+ +  A+  ++ 
Sbjct: 454 AARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKIL 513

Query: 361 REANVSV 367
             AN  V
Sbjct: 514 EGANQRV 520


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score =  180 bits (456), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 294 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 353

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 354 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 413

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 414 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 473

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 474 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 533

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 534 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 593

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 594 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641


>gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 414

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 178/339 (52%), Gaps = 2/339 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+SE  Y   T +Q   +   L ++D++ SAQTG+GKT AF L L   LL++N    
Sbjct: 12  ILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLLQ-LLSQNTALV 70

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                + AL + PTRELA Q+ + +        +      GGVS++ +   L+ G  I++
Sbjct: 71  KGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTMKLRGGVDILI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      L +S ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FSAT 
Sbjct: 131 ATPGRLLDLEHQNALALSQIEILVLDEADRMLDMGFIHDIRRILAKLPKKRQSLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I +L+         V +A  N     I      V  + +   + +++     +  +V
Sbjct: 191 SNEIKSLSTKLLTHPAFVEVAPCNTTAQQISQYVHFVDKNRKRALLSHMIGRGNWQQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +  ++ L +      A+ G  SQ  R+ AL   ++G+  V +ATD+AARG+D
Sbjct: 251 FNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKITVLVATDIAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L  V++ +L   PE+ +HR GRTGRA   G ++ ++
Sbjct: 311 IDQLPYVVNYDLPHIPEDYVHRIGRTGRAQHAGEAISLV 349


>gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
 gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
          Length = 428

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/341 (34%), Positives = 183/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHYLLTHPA 76

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+ P AL +APTRELAVQ+  + + L   TG+ + +  GG     + + LQNG  
Sbjct: 77  IEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKVLQNGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   +++S ++ VVLDEAD M DLGF  DI +I    P   +R  L+
Sbjct: 137 ILIGTTGRLIDYAKQGHVDLSAVQVVVLDEADRMYDLGFIKDIRWIFRRMPGAAERLNLL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +   V +    +    I       +  ++   +  +L     
Sbjct: 197 FSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 ERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSI 357


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 198/367 (53%), Gaps = 12/367 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E +   G+ + T +Q       L+ +DV+  A+TGSGKT   G  L   +  +  
Sbjct: 159 PEILKE-IQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKT--LGYLLPGFMHIKRL 215

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           + +P S P  L +APTRELA Q+  E    + ++  + + C+ GG     + RDL  G  
Sbjct: 216 QNNPRSGPTVLVLAPTRELATQILEEA-VKFGRSSRISSTCLYGGAPKGPQLRDLDRGVD 274

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++
Sbjct: 275 VVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYT 334

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  +A++     V+V I S +    +S I     L+  S++   +  ILR   +
Sbjct: 335 ATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDS 394

Query: 245 KNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + + +FC+T+    +  + L    F   A+ G+ SQ ER   L   R GR+ + +ATDV
Sbjct: 395 GSKVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDV 453

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLF 360
           AARG+D+ D+ +VI++   +  E+ +HR GRTGRAG  G++  F   Q+ +  A+  ++ 
Sbjct: 454 AARGLDIKDIRVVINSPFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKIL 513

Query: 361 REANVSV 367
             AN  V
Sbjct: 514 EGANQRV 520


>gi|315182608|gb|ADT89521.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 412

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/326 (35%), Positives = 171/326 (52%), Gaps = 10/326 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDVL  A TGSGKT+A+ L L        D+ +      AL + PT
Sbjct: 24  TDIQALAIPELLAGKDVLALANTGSGKTLAYALPLL-------DKLNENPQQKALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           RELA+QV   +  +  +   + AVC+ GGV    +++ L    HI V T GRL D +   
Sbjct: 77  RELAIQVSEAINQV-GQAFELNAVCLCGGVDKALQQQALATNPHIFVATTGRLVDLV-NH 134

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           GL++SH+  +VLDEAD +LD+GF  D++ I   +  +R+  MFSAT S A+   AK    
Sbjct: 135 GLDLSHIHTLVLDEADRLLDMGFWPDVQNIAMQTANQRQTAMFSATFSEALKEKAKQLMH 194

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
              +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K
Sbjct: 195 APKQVAAHQENSTNQDITETLFLVNKGSKTKALIELIQQNAWTRVLVFIGAKENADGLAK 254

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L +      AL G  SQ ER  AL   + G+  V IATD+ ARGI +  L +VI+ EL 
Sbjct: 255 KLNKAGVSTTALHGNKSQDEREQALAQFKSGQVNVLIATDLLARGIHIEQLPVVINFELP 314

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVI 348
            + E  +HR GRT RAG +G+++ ++
Sbjct: 315 MHAETYVHRVGRTARAGEQGVAMSLV 340


>gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032]
 gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032]
          Length = 421

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 183/341 (53%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           V+ +AL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A  
Sbjct: 19  VVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAAE 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  DR--QVNQPRALIMAPTRELAVQIHSDAEPLAKATGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDVA
Sbjct: 257 DRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDIDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|23397305|gb|AAN31934.1| putative RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 423

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 172/312 (55%), Gaps = 10/312 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+  G  +   L  +  R      P  L ++PTRELA Q+ +E    
Sbjct: 1   RDIVAIAKTGSGKTL--GYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQI-QEEAVK 57

Query: 98  YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           + ++  +   C+ GG     + RDL+ GA IVV TPGRL D +  + +++  +  +VLDE
Sbjct: 58  FGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDE 117

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENR 214
           AD MLD+GF   I  I+   P KR+ LM++AT    +  +A +   +  +VNI +  E  
Sbjct: 118 ADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELV 177

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
            +  I     +VA  ++   +  ILR    G+K  I+FCST+    + T+ L    F   
Sbjct: 178 ANKSITQHIEVVAPMEKQRRLEQILRSQEPGSK-VIIFCSTKRMCDQLTRNLTRQ-FGAA 235

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G+ SQ ER N L   R GR  V +ATDVAARG+D+ D+  V++ +  +  E+ +HR 
Sbjct: 236 AIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 295

Query: 333 GRTGRAGRKGMS 344
           GRTGRAG  G +
Sbjct: 296 GRTGRAGATGQA 307


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 174/324 (53%), Gaps = 6/324 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +    R +D++  AQTG+GKT AF L L   L A      P     A+
Sbjct: 20  GYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKLSA-----GPRGRVRAV 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   +  L  +TG+      GGVS   + +  + G  I+V  PGRL DH
Sbjct: 75  IVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFKAGVEIIVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + +N+  ++ +VLDEAD M D+GF   I+ +L   P KR+ L+FSAT+   I  LA 
Sbjct: 135 LDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLFSATMPAEIRHLAD 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +  KD  RV I +  +  + + ++   V    +   +  +++     +A+VF  T+ +  
Sbjct: 195 SILKDPARVQI-NHTQPTALVAHKLYRVEKQGKGALLKQVMQESAFSSALVFTRTKHAAK 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +    L +   + VAL G +SQ +R  A++  + GR  + +ATD+AARGID+  +  VI+
Sbjct: 254 KLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAARGIDVAGISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKG 342
            ++ +  E   HR GRTGRA R G
Sbjct: 314 YDMPATVEAYTHRIGRTGRAERNG 337


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 181/343 (52%), Gaps = 8/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 16  DALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKL---DDGGYPD 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
           +A   L ++PTRELA Q+ + ++   Y   GV      GG   +R   E + LQ GA IV
Sbjct: 73  NAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADIV 132

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  + +MFSAT
Sbjct: 133 IATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQNCQTIMFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+   + +A  ++    I   A +   + +   I +I +    +  I
Sbjct: 193 MPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYETQKMGIIKDIFKNGDLERVI 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC ++  V +    L         +  +L Q  R + +   + G+  V +ATD+ ARGI
Sbjct: 252 IFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDIVARGI 311

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + ++
Sbjct: 312 DIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSED 354


>gi|242045340|ref|XP_002460541.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
 gi|241923918|gb|EER97062.1| hypothetical protein SORBIDRAFT_02g030210 [Sorghum bicolor]
          Length = 711

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           I + + ++L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 129 ISEPLRQSLRSKGIKALFPIQATTFDLVLDGNDLVGRARTGQGKTLAFVLPILESLVNGA 188

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR-ERRDL 121
              + R      P  + + PTRELA QV  + E+ Y  T  + A C+ G S +R +   L
Sbjct: 189 HKASRRTEHGRTPSVIVLLPTRELANQVHADFEF-YGATFGLSACCVYGGSPYRPQEMAL 247

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           + G  IVVGTPGR+ D I    LN+ +LK  VLDEADEML++GF DD+E IL       K
Sbjct: 248 RRGVDIVVGTPGRVKDFIVKGTLNLKNLKFRVLDEADEMLNMGFVDDVELILGKVEDATK 307

Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
            + L+FSAT+   +  L+  + K D   V++      +  + + + A+    + R   I 
Sbjct: 308 VQTLLFSATLPDWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIP 367

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +I+R Y      I+F  T+ S S  + ++        AL G++ Q +R   L   R G+ 
Sbjct: 368 DIIRCYSHGGRTIIFTETKDSASELSGLIPGSR----ALHGDVVQAQREVILAGFRGGKF 423

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +     +  
Sbjct: 424 QVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYEPRYKYS 483

Query: 356 AERLFREANVSVVWEPAP 373
             RL RE+ V      AP
Sbjct: 484 VNRLERESGVKFEHISAP 501


>gi|147785805|emb|CAN62124.1| hypothetical protein VITISV_037577 [Vitis vinifera]
          Length = 398

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 178/331 (53%), Gaps = 10/331 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +   N          AL
Sbjct: 41  GFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQ------AL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     +    CIGG SV  + R L+ G HIV GTPGR+CD 
Sbjct: 95  ILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 155 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITN 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 215 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD---LE 314
              T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+     + 
Sbjct: 275 DWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQASHVS 334

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 335 LVINYDLPNNRELYIHRIGRSGRFGRKGVAI 365


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEAPRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660558|sp|Q6CT46|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
          Length = 504

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/317 (35%), Positives = 180/317 (56%), Gaps = 16/317 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KDV+  A+TGSGKT AFG+   + ++   D+   +S+   L I+PTRELA Q+   L  L
Sbjct: 130 KDVIGIAETGSGKTFAFGVPAINNIVTSGDK---SSSVKVLVISPTRELASQIYDNLIVL 186

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G+      GGV   ++R DL+  + +VV TPGRL D I    +++SH+  +VLDEA
Sbjct: 187 TDACGLRSCCVYGGVPKDQQREDLRR-SQVVVATPGRLLDLIEEGSVDLSHVNYLVLDEA 245

Query: 158 DEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----S 211
           D ML+ GF +DI+ I+  +    R+ LMF+AT    +  LA ++  + V+V+I      S
Sbjct: 246 DRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNRDELS 305

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--AKN--AIVFCSTRASVSRFTKVLAEH 267
            N++ + I    V+         +  + +YH    KN   ++F   +   SR  + L  +
Sbjct: 306 ANKRITQI--VEVVDPFRKEKKLLELLKKYHSGPTKNDKVLIFALYKKEASRVERNLKYN 363

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            + V A+ G+LSQQ+R+ AL   + G+  + +ATDVAARG+D+P+++ VI+       E+
Sbjct: 364 GYDVAAIHGDLSQQQRTQALNEFKAGKCNLLLATDVAARGLDIPNVKTVINLTFPLTVED 423

Query: 328 LLHRSGRTGRAGRKGMS 344
            +HR GRTGRAG+ G +
Sbjct: 424 YVHRIGRTGRAGQYGTA 440


>gi|15234166|ref|NP_195063.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75337897|sp|Q9SZB4|RH43_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 43
 gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis thaliana]
 gi|7270285|emb|CAB80054.1| putative protein [Arabidopsis thaliana]
 gi|332660816|gb|AEE86216.1| putative DEAD-box ATP-dependent RNA helicase 43 [Arabidopsis
           thaliana]
          Length = 542

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 181/354 (51%), Gaps = 9/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  +   L ++G ++ T +Q   L   L  +D++  A TGSGKT+ F L +    L E
Sbjct: 103 KFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQE 162

Query: 66  NDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRE 117
                 A+   P+AL I P+RELA Q    +E   A         +   +CIGGV +  +
Sbjct: 163 EIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQ 222

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI  + D   
Sbjct: 223 LDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFK 282

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A +     V VN+      + D+      V    +   ++ 
Sbjct: 283 SQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLE 342

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++FC  +A V    + L     + VA+ G   Q++R  A+ + + G+  V
Sbjct: 343 CLQ-KTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDV 401

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I +N
Sbjct: 402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKN 455


>gi|115449921|ref|NP_001048584.1| Os02g0826100 [Oryza sativa Japonica Group]
 gi|75324058|sp|Q6K7R9|RH48_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 48
 gi|48716436|dbj|BAD23043.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113538115|dbj|BAF10498.1| Os02g0826100 [Oryza sativa Japonica Group]
 gi|218197440|gb|EEC79867.1| hypothetical protein OsI_21363 [Oryza sativa Indica Group]
 gi|222623956|gb|EEE58088.1| hypothetical protein OsJ_08955 [Oryza sativa Japonica Group]
          Length = 811

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 190/354 (53%), Gaps = 22/354 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA----END 67
           +AL++ GYV  T VQE  L   L  KDVLV A+TG+GK+ AF L A+ S L A     N 
Sbjct: 355 KALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNH 414

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           R SP     +L + PTRELA+Q+  E    L    G+ V   IGG     ++R L+ +  
Sbjct: 415 RVSPI---FSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDPC 471

Query: 126 HIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI  K    + +  LK +VLDEAD +LDLGFR DIE I+DS P++R+ 
Sbjct: 472 QILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLDLGFRTDIEKIVDSLPRQRQT 531

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL 239
           L+FSATI   +  +++   ++D V V+        +      + + +      + +  +L
Sbjct: 532 LLFSATIPKEVRRVSQLVLKRDHVFVDTVGLGAVETPTKVEQLYLVMPHELHFHMVYRLL 591

Query: 240 RYHGAK----NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
           R H  +      IVFC+T A V+ F  ++   L   V  +     Q  R+   +  RD  
Sbjct: 592 REHIDQEVDYKVIVFCTT-AMVTEFMYIMLRDLKLNVREIHSRKPQLYRTRISEEFRDSS 650

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + + +DV+ RG++ P + LVI   + S+ E+ +HR GRTGR G+ G  + ++
Sbjct: 651 RLILVTSDVSTRGVNYPGVTLVIQVGVPSDREHYIHRLGRTGREGKSGKGILLL 704


>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
 gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
 gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
 gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
          Length = 444

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|325088148|gb|EGC41458.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H88]
          Length = 805

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 191/374 (51%), Gaps = 33/374 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L    +AE 
Sbjct: 370 LPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLL-VYIAEL 428

Query: 67  DRFSP-----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            R           P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L
Sbjct: 429 PRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYSL 488

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           +NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P    
Sbjct: 489 RNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQ 548

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +M++AT+  A+  +A+ Y +    V I +     
Sbjct: 549 KPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAV 608

Query: 217 SDIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++ R   ++  D R   +  IL     +   IVF + + +     + +    +  V L
Sbjct: 609 DTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 668

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GR
Sbjct: 669 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR 728

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG+ G+++  +
Sbjct: 729 TGRAGKSGIAITFL 742


>gi|182624967|ref|ZP_02952745.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
 gi|177909764|gb|EDT72182.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
          Length = 453

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 187/354 (52%), Gaps = 31/354 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ +   +  E
Sbjct: 7   NLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVCEKINIE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +     V  A   G    + + R+L+   
Sbjct: 67  EKKVQ------CLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIRELKQRV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      +   +F
Sbjct: 121 HIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLNKTTALF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  ++  +L+  G  
Sbjct: 181 SATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKVKSVYKMLKDEG-- 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
              + C+                     L G++ Q++R   ++  RD   +V + TD+AA
Sbjct: 239 ---ITCN--------------------ELHGDMEQKKRIEVMENFRDKHFKVLVCTDIAA 275

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++  E +
Sbjct: 276 RGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKYLENV 329


>gi|50547377|ref|XP_501158.1| YALI0B20922p [Yarrowia lipolytica]
 gi|74660087|sp|Q6CDV4|IF4A_YARLI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49647024|emb|CAG83411.1| YALI0B20922p [Yarrowia lipolytica]
          Length = 395

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 186/346 (53%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ N +S+Q+  + P ++  DVL  AQ+G+GKT  F ++      A  +       P AL
Sbjct: 41  GFENPSSIQQRAILPVIKGNDVLAQAQSGTGKTATFSIS------ALQNIDEKIKKPQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA Q+ + +        +    CIGG SV  + R +Q G H++VGTPGR+ D 
Sbjct: 95  IIAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L    +K  +LDEADEML   F+D I  I  + P+  + ++ SAT+   +  +  
Sbjct: 155 IERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETTQTVLLSATMPAEVLDITG 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   S +   + ++        A++FC+TR  V
Sbjct: 215 KFMRDPVRILVKKDELTLEGIKQFYIDVEQESYKFEVLCDLYETINVSQAVIFCNTRRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L E  F V ++ GE  Q +R   ++  R G +R+ I TD+ ARGID+  + LVI
Sbjct: 275 DYLTQALTEADFTVSSMHGETEQSQRDVIMKAFRTGSSRILITTDLLARGIDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L SN EN +HR GR GR GRKG+++ FV  ++  M +  ER +
Sbjct: 335 NFDLPSNRENYIHRIGRGGRFGRKGVAINFVTSEDHGMLKELERFY 380


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 179/334 (53%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  + T +Q   +   L  ++V+  A+TGSGKT AF L +   L   +D +     P A+
Sbjct: 197 GLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFALPILHRL--SDDPY----GPFAV 250

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +   L     +  AV +GGV + ++   L    H+++ TPGRL DH
Sbjct: 251 VLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMMQQSLVLAKRPHVIIATPGRLADH 310

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTL 196
           +     L+++  + +VLDEAD +L+ GF  D+  IL + S  +R+ L+FSATI+  I  L
Sbjct: 311 LNSNSQLSLARARFLVLDEADRLLEEGFSPDLNRILAAASNPQRQTLLFSATITKNIANL 370

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
                 + V     S     + +D R V+     +D  +  +L  H  K+ IVF S+  +
Sbjct: 371 ESMSMSNVVHYETKSSVATVTTLDQRFVITPAKVKDCYLSYLLGQHEDKSIIVFTSSCRN 430

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
               T+++    F+ VAL  E+SQ  R  +L   +     + IATDVA+RG+D+P ++LV
Sbjct: 431 CETITRMIKALGFRCVALHSEMSQSMRLGSLAKFKSSIVNILIATDVASRGLDIPTVKLV 490

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           I+ ++     + +HR GRT RAGR GM+V  + Q
Sbjct: 491 INNDVPRTSTDYVHRVGRTARAGRGGMAVTFVTQ 524


>gi|313213750|emb|CBY40630.1| unnamed protein product [Oikopleura dioica]
          Length = 416

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAENDRF----SPASAPLALAIAPTRELAVQVGRELEW 96
           +  AQTGSGKT AF + + S +     +     S  + PLAL ++PTREL  Q+ +E   
Sbjct: 1   MSCAQTGSGKTAAFLMPMLSNIFHNPGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALK 60

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
              ++ V   V  GG  V  + RDL  G H++V TPGRL D +    + +   + + LDE
Sbjct: 61  FAYRSKVRPCVIYGGADVGEQLRDLSRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDE 120

Query: 157 ADEMLDLGFRDDIEFILDSS--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           AD MLD+GF   I  I++    P  R+ LMFSAT    I  LA ++ ++ + + +     
Sbjct: 121 ADRMLDMGFEPQIRRIIEKVIFPSDRQTLMFSATFPKQIQALASDFLENYIFLAVGRVGS 180

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++I  R   V  +++   +  +L        IVF  T+         L E  +Q   +
Sbjct: 181 TSANITQRFEYVQETEKVRKLCELLENGQEMLTIVFTETKKGADYLDHFLHERGYQSTCI 240

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ +QQER  A+ + + G+  + +AT VAARG+D+P++  VI+ +L S  +  +HR GR
Sbjct: 241 HGDRNQQEREEAVHLFKSGQTPILVATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGR 300

Query: 335 TGRAGRKGMSV 345
           TGRAG  G + 
Sbjct: 301 TGRAGNTGWAT 311


>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 442

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 176/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+G+   T++Q   +   L  +DVL SA TG+GKT A+ L     L+    + S  
Sbjct: 17  DALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPAMQHLIDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
            I   A+    D V V      R+   I    YRA    L  +   +V++L+      +I
Sbjct: 195 NIKDFAERLLNDPVAVEADPSQRERKKIQQWYYRAD--DLEHKTKLLVHLLKQPEVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  +      L E   +   L GE+ Q +R+ AL+ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRT RAGRKG+++ ++
Sbjct: 313 DIEDVSHVFNYDMPRTADIYLHRIGRTARAGRKGIALSLV 352


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 183/346 (52%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + +   G+ + T +Q       ++ +DV+  A+TGSGKT   G  L   +  + 
Sbjct: 157 FPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKT--LGYLLPGFMHIKR 214

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            + S  + P  L +APTRELA Q+  E    + ++  +   C+ GG     + RDL  G 
Sbjct: 215 LQNSTRNGPTVLVLAPTRELATQILDE-AVKFGRSSRISCTCLYGGAPKGPQLRDLDRGV 273

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM+
Sbjct: 274 DVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMY 333

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +AT    +  +A +     V+V I S +    +S I     ++  S++   +  ILR   
Sbjct: 334 TATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRLEQILRSQD 393

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           + + I +FC+T+    +  + L    F   A+ G+ SQ ER   L   R GR+ + +ATD
Sbjct: 394 SGSKILIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLNQFRSGRSPILVATD 452

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++   +
Sbjct: 453 VAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYIFL 498


>gi|148678591|gb|EDL10538.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Mus
           musculus]
          Length = 354

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 174/319 (54%), Gaps = 7/319 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL   
Sbjct: 34  VTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    H
Sbjct: 94  QRL------FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLALAKKPH 147

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 148 IVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 207

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      
Sbjct: 208 SATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGN 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+
Sbjct: 268 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVAS 327

Query: 306 RGIDLPDLELVIHAELSSN 324
           RG+D+P +++V++ ++ ++
Sbjct: 328 RGLDIPHVDVVVNFDIPTH 346


>gi|307194191|gb|EFN76608.1| Eukaryotic initiation factor 4A-II [Harpegnathos saltator]
          Length = 423

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 176/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSIS----ILQQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 112 ID--TSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HVVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    V V   D +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIH 375


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 190/370 (51%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 9   LPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGELP 68

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+
Sbjct: 69  RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYSLR 128

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 129 NGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVANEK 188

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 189 PDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAVD 248

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   V+  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 249 TVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 308

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 309 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 368

Query: 336 GRAGRKGMSV 345
           GRAG+ G+++
Sbjct: 369 GRAGKSGVAI 378


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 190/337 (56%), Gaps = 16/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL       PA A    
Sbjct: 20  GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVNRLLTR-----PALADRKP 74

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R  LQ G  +++ TP
Sbjct: 75  EDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQRELLQQGVDVIIATP 134

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++  R+ L+FSAT+
Sbjct: 135 GRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERTIRQTLLFSATL 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
           S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++ +L R  GA+  +
Sbjct: 195 SHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLLGLLSRSEGART-M 253

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  + +ATDVAARG+
Sbjct: 254 VFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 313

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 314 HIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 350


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 181/339 (53%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPA 72
           L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +   A  DR S  
Sbjct: 63  LTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLDRRSGK 122

Query: 73  SAPLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
              ++ L + PTRELA QV   ++ +     G +  VC+ GGVSV+ + + L+ G  I+V
Sbjct: 123 GNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGTDILV 182

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+FSAT 
Sbjct: 183 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFSATF 242

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL      D + V + S N   S +  R   V    +   + ++++ H  + A++
Sbjct: 243 PEQVKTLTHELLNDPIEVQLQSANA--STLVQRVFEVEKGRKTALLAHLIQQHEWRQALI 300

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + S       L +         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 301 FVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIAARGLD 360

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GR+G  G+++ +I
Sbjct: 361 IEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLI 399


>gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933]
 gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1044]
          Length = 421

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSI 357


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 178/347 (51%), Gaps = 8/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLL 63
           IP++I   LS+  Y   T +Q   +   L   D++  A TGSGKT  F L +   A   L
Sbjct: 16  IPELIAR-LSDLEYTQPTPIQAQAIPSILTGSDLIAGANTGSGKTATFALPMLQKAFLEL 74

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDL 121
                 S  +    L + PTRELA QV   ++   A   G +  V + GGVSV+ + + L
Sbjct: 75  GAKSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +  L +    D V + +  +N+  S +  R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVKLLTQELLNDPVEIQV--QNKDESTLVQRVFTVNKGEKTTVLAHLIKT 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  ++F + +         L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ ++
Sbjct: 313 DIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLV 359


>gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
 gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
          Length = 444

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 13/342 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E LS  G+   T +Q       L+ KD++  A+TGSGKT+  G  L   +  +  R
Sbjct: 173 EILREVLSA-GFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTL--GYLLPGFIHLKRCR 229

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
             P   P  L ++PTRELA Q+  E    + ++  +   C+ GG     + ++L  G  I
Sbjct: 230 NDPQLGPTVLVLSPTRELATQIQDEA-VKFGRSSRISCTCLYGGAPKGPQLKELDRGVDI 288

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +  + +++S +  +VLDEAD MLD+GF   I  I+   P +R+ LM++A
Sbjct: 289 VVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTA 348

Query: 188 TISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           T    +  +A +   + V+VNI + +      S   Y  VL  + ++   +  ILR    
Sbjct: 349 TWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAPM-EKHRRLEQILRSQEP 407

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+    +  + L    F   A+ G+ SQ ER + L   R GR+ V +ATD
Sbjct: 408 GSK-IIIFCSTKKMCDQLARNLT-RTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATD 465

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           VAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++
Sbjct: 466 VAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVA 507


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 188/351 (53%), Gaps = 10/351 (2%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ+I  AL++   V  T +Q+ +L   +  +D+L SA TG+GKT+AF L    
Sbjct: 3   FESLDLDPQLIV-ALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQ 61

Query: 61  TLLAENDR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL    R   P      L + PTRELA QV ++ + L A T   V++  GGV       
Sbjct: 62  HLLDFPRRELGPGRV---LILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   IV+ TPGRL ++IR      + ++ ++LDEAD MLD+GF DD++ I +   ++
Sbjct: 119 VLKNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRR 178

Query: 180 RRMLMFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           ++ ++FSAT+    I   A+    + V        R+ + I  +   +   + +   +V+
Sbjct: 179 QQTMLFSATLEGRGIDRFAEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQALLVH 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            LR      +IVF  TR  ++     L         L GE+ Q +R+ +L   ++ + +V
Sbjct: 239 WLRDESTTRSIVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            IATDVAARGID+ D+  V + +L  + E  +HR GRT RAG+KG ++ ++
Sbjct: 299 LIATDVAARGIDVQDVSHVFNFDLPRSAEIYVHRIGRTARAGKKGTAISLV 349


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 187/370 (50%), Gaps = 31/370 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + + G+   T +Q+      +  +D++  + TGSGKT+++ L     + A+ 
Sbjct: 129 FPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ- 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              SP   P+ L +APTRELAVQ+ +E    + K+  +   C+ GGV +  +  DL  G 
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECT-KFGKSSRIRNTCVYGGVPLGPQILDLIRGV 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ +MF
Sbjct: 247 EICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMF 306

Query: 186 SATISPAITTLAKNYQKDAVRVNI------ASENRQH-----SDIDYRAVL-----VALS 229
           SAT    +  LA++Y  D ++V +      AS N +       + D RA L       L 
Sbjct: 307 SATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLK 366

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           DRDN +            ++F  T+      T+ L +  +  +A+ G+ +Q ER   L  
Sbjct: 367 DRDNKV------------LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNE 414

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G++ + +ATDVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +     
Sbjct: 415 FRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFT 474

Query: 350 QNMQRRAERL 359
            +  ++A  L
Sbjct: 475 SDNAKQAREL 484


>gi|329297696|ref|ZP_08255032.1| ATP-dependent RNA helicase SrmB [Plautia stali symbiont]
          Length = 442

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 178/339 (52%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q   +   L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGDN 195

Query: 193 ITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+    D V +      SE ++     YRA    L  +   +V++L+    K AIV
Sbjct: 196 IKDFAERLLNDPVAIEADPSKSERKKIQQWYYRAD--NLEHKIKLLVHLLKQPEVKRAIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  +      + E   +   L GE+ Q  R+ A++ + DGR  V +ATDVAARGID
Sbjct: 254 FVRKRERLHELVTWMHEAGLRSSYLEGEMVQANRNEAIKRLNDGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ++  VI+ +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 314 IDNVTHVINYDLPRTADVYLHRIGRTGRAGRKGTAISLV 352


>gi|225559088|gb|EEH07371.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus G186AR]
          Length = 805

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 191/374 (51%), Gaps = 33/374 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L    +AE 
Sbjct: 370 LPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLL-VYIAEL 428

Query: 67  DRFSP-----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            R           P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L
Sbjct: 429 PRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYSL 488

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           +NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P    
Sbjct: 489 RNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQ 548

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +M++AT+  A+  +A+ Y +    V I +     
Sbjct: 549 KPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAV 608

Query: 217 SDIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++ R   ++  D R   +  IL     +   IVF + + +     + +    +  V L
Sbjct: 609 DTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTL 668

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GR
Sbjct: 669 HGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR 728

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG+ G+++  +
Sbjct: 729 TGRAGKSGIAITFL 742


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 182/333 (54%), Gaps = 7/333 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   +  +D +  AQ+G+GKT  F + +   +       + A    AL
Sbjct: 45  GFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAI------DTNAKDCQAL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+   ++ L     +    CIGG  V  + + L+ G  IV GTPGR+ D 
Sbjct: 99  ILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDM 158

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ + L+  ++K ++LDEADE+   GF++ I  +    P   ++++ SAT+S  +  +  
Sbjct: 159 VKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTN 218

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D V++ +  +      I    V     D + + + ++        A++FC+T+  V
Sbjct: 219 KFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKLKV 278

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +  T  + +  F VV++ G++ Q ER + +   R G +RV I+TDV ARGID+  + LVI
Sbjct: 279 NWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVI 338

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +L ++ EN +HR GR+GR GRKG+++ +I +
Sbjct: 339 NYDLPTDKENYIHRIGRSGRFGRKGVAINLITK 371


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 20/372 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 66  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 237

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 238 LLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 297

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     
Sbjct: 298 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 351 NMQRRAERLFRE 362
           N+    ER  ++
Sbjct: 358 NLMSSVERYLKQ 369


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   + ++G+   T +Q       L  +D++  + TGSGKT+AF L  A   +  
Sbjct: 67  SMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAF-LLPAMIHINA 125

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELAVQ+  E +     + +      GGV    +  DL  G 
Sbjct: 126 QPYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYDLSRGV 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 186 EIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDRQTLMW 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           SAT    +  LA+++ ++  +V + S E   + DI     +V    +   +   L+ H  
Sbjct: 246 SATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHLQEHNN 305

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   ++F  T+      T+ L    +  +A+ G+ +Q ER   L   ++GR+ + +ATDV
Sbjct: 306 AGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLILVATDV 365

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           AARG+D+ D+ +VI+ +     E+ +HR GR GRAG KG ++ F   +N +  R   R+ 
Sbjct: 366 AARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCARELIRIL 425

Query: 361 REAN 364
           ++AN
Sbjct: 426 KQAN 429


>gi|282863532|ref|ZP_06272591.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561867|gb|EFB67410.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 790

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL A  
Sbjct: 121 LPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLAALA 177

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 178 GGRTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 237

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 238 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQRMLFS 297

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     S + +  ++V   D+      I    G   
Sbjct: 298 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVVKPKDKAPVTAAIAARKG--R 355

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 356 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 415

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V
Sbjct: 416 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGV 474


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 186/369 (50%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + ++G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 135 FPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQ- 193

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +      P+ L +APTREL VQ+  E    + K+  +   C+ GG     + RDL  G 
Sbjct: 194 PQLQYGDGPIVLVLAPTRELTVQIQTECS-KFGKSSRIRNTCVYGGAPKGPQIRDLARGV 252

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 253 EICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 312

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  L ++Y  D ++V I S      H+      V+   S RD  + ++     
Sbjct: 313 SATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALN 372

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+  + +AT
Sbjct: 373 EKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVAT 432

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++ F    N +   +  +
Sbjct: 433 DVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCK 492

Query: 359 LFREANVSV 367
           + REAN +V
Sbjct: 493 IMREANQTV 501


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 447

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/318 (33%), Positives = 171/318 (53%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY + T +Q   +   L+ +D+  +AQTG+GKT  F L +   L       S   
Sbjct: 19  ALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFTLPILQLLSHRPALKSGPG 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA QV   +E       +   V  GGV+++ + R L+    I+V TPG
Sbjct: 79  RPRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQIRALRGQVDIIVATPG 138

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH   K +++S ++ +VLDEAD MLD+GF  DI  I+   P +R+ L+FSAT S  +
Sbjct: 139 RLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKLLPARRQNLLFSATFSDEM 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA     +   V +A+ N     +  +  LV    + + + ++++ +  +  +VF  T
Sbjct: 199 RALADGILTNPASVEVAARNTTAERVQQQVHLVESHAKRDLLSHLIKQNQWQQVLVFTRT 258

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +   +R  + L++      A+ G  SQ  R+ AL   ++GR  V +ATD+AARG+D+  L
Sbjct: 259 KHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNGRIPVLVATDIAARGLDIDQL 318

Query: 314 ELVIHAELSSNPENLLHR 331
             V++ EL + PE+ +HR
Sbjct: 319 PQVVNFELPNVPEDYVHR 336


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADSMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 376 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 435

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 436 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 495

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 496 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 555

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 556 PDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 615

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   VA  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 616 TVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 676 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 735

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 736 GRAGKSGVAITFL 748


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|50295040|ref|XP_449931.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608117|sp|Q6FIL3|HAS1_CANGA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49529245|emb|CAG62911.1| unnamed protein product [Candida glabrata]
          Length = 494

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 201/357 (56%), Gaps = 15/357 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q    A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF   L +  L  
Sbjct: 35  NLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAF--LLPTIELLH 92

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + +F P +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L 
Sbjct: 93  SLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQT---FGIVIGGANRRQEAEKLM 149

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-R 180
            G +++V TPGRL DH++  KG    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 150 KGVNLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDR 209

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSD-RDNAIVN 237
           + ++FSAT +  +  L++ + +   + +N+ SE+   + D   +  +V  SD R   + +
Sbjct: 210 QSMLFSATQTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYVVCESDKRFLLLFS 269

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    +
Sbjct: 270 FLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGI 329

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
            I TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+ F+IP  +
Sbjct: 330 LICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNGKGKSLMFLIPNEL 386


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 6/340 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T++Q   +   L  +D++  AQTG+GKT +F L +   L     R   A 
Sbjct: 15  AIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMIDILAHGRAR---AL 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    E       + +A+ IGGV +  + + L+ G  +++ TPG
Sbjct: 72  MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQIKALEKGVDVLIATPG 131

Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D   RGK L ++    +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P 
Sbjct: 132 RLMDLFERGKIL-LTGCNLLVIDEADRMLDMGFIPDIENICTKLPANRQTLLFSATMPPP 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +  +   + +A    ++ +I+   V  +   + + +  ++       AIVFC+
Sbjct: 191 IKKLADKFLSNPKTIEVARPASRNENIEQFVVKTSERGKRDTLRGLIEAEDLSTAIVFCN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +V    K L    ++   + G++ Q  R   L   + G   + +A+DVAARG+D+  
Sbjct: 251 RKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINILVASDVAARGLDVKG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  V + +   +P++ +HR GRTGRAG +G +   V P +
Sbjct: 311 VSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSD 350


>gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301]
 gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073]
 gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T]
 gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046]
 gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89]
 gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401]
 gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1]
 gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739]
 gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11]
 gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469]
 gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1]
 gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88]
 gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989]
 gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39]
 gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026]
 gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606]
 gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B]
 gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073]
 gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1]
 gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82]
 gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15]
 gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034]
 gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972]
 gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146]
 gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T]
 gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431]
 gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327]
 gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B]
 gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           G5101]
 gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14]
 gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010]
 gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G]
 gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180]
 gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357]
 gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1]
 gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1125]
 gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1044]
 gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v]
 gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86]
 gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74]
 gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88]
 gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70]
 gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71]
 gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671]
 gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218]
 gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272]
 gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227]
 gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304]
          Length = 444

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|168009407|ref|XP_001757397.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691520|gb|EDQ77882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 14/378 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTL 62
            E +P  + +    +G+   + +Q       L  +D++  A TGSGKT+AFG+ A+   L
Sbjct: 67  LEGVPPTVLQCC--QGFEKPSPIQGHAWPFLLAGRDLIGIAATGSGKTLAFGIPAMKHVL 124

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     +AP+ L +APTRELA Q+   LE   +  GV V    GG     +R  L+
Sbjct: 125 DKITKTKGKKAAPVCLVLAPTRELAQQIADVLEESGSACGVGVVCVYGGTPKGPQRSALK 184

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VV TPGRL D +     ++  +  VVLDEAD MLDLGF   I  IL +  + R+ 
Sbjct: 185 AGARVVVATPGRLQDLMEEGVCSLDQVTYVVLDEADRMLDLGFEPAIRAILSTCCQVRQT 244

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNI 238
           +MFSAT   A++ LA  +  +KD V+V + S++   ++ D   ++  + D  RD  +  +
Sbjct: 245 VMFSATWPMAVSKLAMEFMNEKDPVKVMVGSQDLA-ANHDVTQIVEVIEDRARDARLETL 303

Query: 239 L-RYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L +YH ++    +VF   +    R    L    ++V A+ G+  Q +R+ A+   +DG  
Sbjct: 304 LQKYHKSRTNRVLVFVLYKKEAVRVETALQRRGWKVSAVHGDKGQSDRTRAVNSFKDGTR 363

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARG+D+PD+E VI+       E+ +HR GRTGRAG+KG+S     Q  + R
Sbjct: 364 PLLIATDVAARGLDIPDVEYVINYSFPLTTEDYVHRIGRTGRAGKKGLSHTFFTQADRAR 423

Query: 356 AERL---FREANVSVVWE 370
           A  L    REA  +V  E
Sbjct: 424 AGELVNVLREAGQTVPEE 441


>gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli]
          Length = 444

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 192/360 (53%), Gaps = 13/360 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E  S  G+   T +Q       L+ +D++  A+TGSGKT+  G  +   +  +  
Sbjct: 171 PEIIREVYSA-GFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTL--GYLIPGFIHLKRI 227

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R +P   P  L ++PTRELA Q+  E    + ++  +   C+ GG     + RDL  GA 
Sbjct: 228 RNNPQMGPTVLVLSPTRELATQIQDEAV-KFGRSSRLSCTCLYGGAPKGPQLRDLDRGAD 286

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++
Sbjct: 287 IVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 346

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           AT    +  +A +   + V+VNI + +      +   Y  VL  + ++   +  ILR   
Sbjct: 347 ATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYM-EKHKRLEQILRSQE 405

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    +  + L    F   A+ G+ SQ ER   L   R GR+ V +AT
Sbjct: 406 PGSK-IIIFCSTKKMCDQLARNLTR-PFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVAT 463

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++     +   + A  L +
Sbjct: 464 DVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVK 523


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 192/337 (56%), Gaps = 16/337 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---- 74
           G+   T +Q   L   L  +DV   AQTG+GKT+AF +A+ + LL+      PA A    
Sbjct: 28  GFTRCTPIQALTLPVALPGRDVAGQAQTGTGKTLAFLVAVMNRLLSR-----PALADRKP 82

Query: 75  --PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G  +++ TP
Sbjct: 83  EDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATP 142

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  K +++   +  VLDEAD M DLGF  DI F+L   P++  R+ L+FSAT+
Sbjct: 143 GRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
           S  +  LA  +  +  ++ + +E+   + +  R    A  ++   ++ +L R  GA+  +
Sbjct: 203 SHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPADEEKLTLLLGLLSRSEGART-M 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+A V R  + L  + ++V  LSG++ Q++R   L   + G+  + + TDVAARG+
Sbjct: 262 VFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQKGQLEILVVTDVAARGL 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  ++ V + +L  + E+ +HR GRT R G +G ++
Sbjct: 322 HIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358


>gi|240282011|gb|EER45514.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H143]
          Length = 790

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 191/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 355 LPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 414

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E +      G  V   +GG S+  +   L+
Sbjct: 415 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYSLR 474

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 475 NGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNQK 534

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 535 PDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 594

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   +  IL     +   IVF + + +     + +    +  V L 
Sbjct: 595 TVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVTLH 654

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 655 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 714

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 715 GRAGKSGIAITFL 727


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 186/341 (54%), Gaps = 11/341 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + ++E+ Y     +Q+A +   L+  DVL  A+TGSGKT +F L +  +      +  PA
Sbjct: 19  KTIAEQNYTQPYPIQQAAIPAILKGNDVLGIAKTGSGKTASFVLPILESF----QKMPPA 74

Query: 73  S--APLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 AL + PTRELAVQ+G   +    +    V      GGVS++ +   LQN   I+
Sbjct: 75  KNRHITALVLVPTRELAVQIGSVFQIFSERLPRKVKTLAVFGGVSINPQMIALQN-VEIL 133

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL + +  K L+++  + +VLDEAD+ML++GF D++  I    PKKR+ ++FSAT
Sbjct: 134 VATPGRLLELLSYKALSLAETRILVLDEADKMLNMGFADEMRDIFFLLPKKRQSILFSAT 193

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
           +   +  + K+  K  VR+ I  E  Q+ D+  +       DR   ++  +++    K  
Sbjct: 194 LGDEVDKINKDQLKSPVRIEI-EEEEQNLDLIKQTGYFVDPDRKGPLLRYLIKSQQMKQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S   +     + L ++    +A+  + SQ  R+ AL   + G+  V +ATD+A+RG
Sbjct: 253 LVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVLVATDLASRG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  L  VI+ EL  +P++ +HR GRTGRA   G ++ +I
Sbjct: 313 IDIQFLPYVINFELPRSPKDYVHRIGRTGRAENPGEAISLI 353


>gi|85060366|ref|YP_456068.1| ATP-dependent RNA helicase RhlB [Sodalis glossinidius str.
           'morsitans']
 gi|123518632|sp|Q2NQB2|RHLB_SODGM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84780886|dbj|BAE75663.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 415

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 180/350 (51%), Gaps = 14/350 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++ E L  +G+ N T +Q   L   L  KDV   AQTG+GKT+AF  A    LL
Sbjct: 14  FALYPPIV-EVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFHHLL 72

Query: 64  AENDRFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  PA+       P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++
Sbjct: 73  TH-----PAAEGRQTNQPRALIMAPTRELAVQIHSDAEPLAQATGLKMGLAYGGDGYDKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  I+VGT GRL D+ +   +N+S ++ VVLDEAD M DLGF  DI ++    P
Sbjct: 128 LKVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMP 187

Query: 178 KK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R  ++FSAT+S  +  LA  +  +A  V +    +    I       +  ++   +
Sbjct: 188 AAAGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLL 247

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++        I+F +T+         LA    +V  L+G++SQ+ R   L+    G  
Sbjct: 248 QTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGAL 307

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 308 DILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSI 357


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 147 DLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 206

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 207 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 266

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 267 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 326

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 327 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 386

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 387 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 446

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 447 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 494


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 196/394 (49%), Gaps = 39/394 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L      ++ 
Sbjct: 273 NFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLP-GLVHISH 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
               +    P+ L +APTRELA Q+   +     ++K  +      GG     + RDL+ 
Sbjct: 332 QKPLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALKGPQVRDLER 391

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++L
Sbjct: 392 GVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQVL 451

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-----------------ENRQHSDIDYRAVLV 226
           M+SAT    + TLA+++ +D +++NI S                 EN + S +      +
Sbjct: 452 MWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKESKLLKLLKEI 511

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           A +D  N I            I+F  T+  V    K +    +   ++ G+ SQ ER   
Sbjct: 512 ASTDASNKI------------IIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYV 559

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           LQ  R G++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +  
Sbjct: 560 LQDFRHGKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYS 619

Query: 347 VIPQNMQRRAERLFREANVSVVWEPA--PSVEAI 378
               N  R+A  L     +SV+ E    P+VE +
Sbjct: 620 FFTPNNGRQAREL-----LSVLEEAGQQPTVELV 648


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 10/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 135 FPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 193

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 194 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 252

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 253 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMW 312

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++VNI S      H       V+     RD  I ++ +   
Sbjct: 313 SATWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIKHLEKMMD 372

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 373 NKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVAT 432

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG  G +V     +  ++A  L  
Sbjct: 433 DVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTFFTTDNSKQARDLVN 492

Query: 360 -FREA 363
             REA
Sbjct: 493 VLREA 497


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 181/334 (54%), Gaps = 11/334 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + +L        FS    P  + ++PTREL  Q+  + 
Sbjct: 299 RDLMACAQTGSGKTAAFLLPIXTGMLNNGITGSSFSDXQEPQCIIVSPTRELTSQI-YKX 357

Query: 95  EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            + +A+  ++  V I GG SV  + ++++ G H+ V TPGRL D I    + +++ K +V
Sbjct: 358 AYKFARDTILRPVVIYGGTSVXHQLKEVERGCHLXVATPGRLMDFINRGKVKVNNCKFLV 417

Query: 154 LDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           LDEAD MLD+GF  ++E ++     P K  R+ LMFSAT    +   A  Y +D + + +
Sbjct: 418 LDEADRMLDMGFGPEMERLIYXPDMPXKGERQCLMFSATFPNEVXEKAAEYLQDYLFLTV 477

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHL 268
                  SDI    + V    + + ++ +L+   A +  +VF  T+ S      VL++  
Sbjct: 478 GRVGGAASDITQSVLEVGQYGKKDQLLALLQAQDATDRTLVFVETKRSADFXASVLSQSE 537

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F   ++ G+  Q+ER  AL   R GRA V +AT VAARG+D+P+++ V++ +L S  +  
Sbjct: 538 FPTTSIHGDREQREREEALADFRSGRAPVLVATSVAARGLDIPNVKHVVNYDLPSGIDEY 597

Query: 329 LHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           +HR GRTGR G  G +  F  P    + A  L +
Sbjct: 598 VHRIGRTGRVGNLGKATSFYDPSKDSQSARALIK 631


>gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
 gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
          Length = 421

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
 gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
          Length = 749

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 181/352 (51%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 123 NVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLL-- 180

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L I PTRELAVQ+   +E L   T +  ++ +GG+S   +   L+ 
Sbjct: 181 ---FRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRT 237

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R  + + +  L  +VLDEAD +L+LGFR++I  ++   P +R+ 
Sbjct: 238 HPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQT 297

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  ++ L K   K  VR++      + S +    + +      D++  ++++ 
Sbjct: 298 MLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLC 357

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+    R   +      +   L G L+Q +R  AL+  R       I
Sbjct: 358 SRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLI 417

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +E VI+ E     +  +HR GRT RAGR G SV ++ + 
Sbjct: 418 ATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQ 469


>gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB
 gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli]
 gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli]
 gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli]
 gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli]
 gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli]
 gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           G5101]
 gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str.
           493-89]
 gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H
           2687]
 gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1125]
          Length = 421

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 180/340 (52%), Gaps = 18/340 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS---------- 73
           T VQ+  +   +  +D++  AQTGSGKT  F   + S          PA+          
Sbjct: 211 TPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQGPGGYGRQ 270

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V 
Sbjct: 271 RKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVA 330

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I++     + + R+ LMFS
Sbjct: 331 TPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVQDRQTLMFS 390

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAK 245
           AT    I  LA+++ KD + +++        +I  R + V    D+ + ++++L  HG  
Sbjct: 391 ATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLLSTHGGG 450

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +    +  L        ++ G+ +Q+ER  AL+M R GR  + +AT VAA
Sbjct: 451 LTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAA 510

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 511 RGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 550


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPA 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + + CI GG     + 
Sbjct: 153 IVHIIHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQI 211

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ 
Sbjct: 272 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIL 331

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGK 391

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 392 ASILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 451

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 452 QASDLISVLREANQAI 467


>gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB
 gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli]
 gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli]
 gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12]
 gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1]
          Length = 444

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 260 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 319

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 320 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 379

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++      S +
Sbjct: 380 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKE 439

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 440 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 499

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 500 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 559

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 560 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 607


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 20/372 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 66  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 237

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 238 LLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 297

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     
Sbjct: 298 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 351 NMQRRAERLFRE 362
           N+    ER  ++
Sbjct: 358 NLMSSVERYLKQ 369


>gi|37677247|ref|NP_937643.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201792|dbj|BAC97613.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 436

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 113/325 (34%), Positives = 172/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L     R +P     AL + PT
Sbjct: 48  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKL-----RVNPEQK--ALILVPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   +  +    G+      GGV   ++ + L    HI+V T GRL D +   G
Sbjct: 101 RELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALATNPHILVATTGRLVD-LANNG 159

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S++  +VLDEAD +LD+GF  D++ I   +  +R+  MFSAT S  +   AK   + 
Sbjct: 160 LDLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQTAMFSATFSDELKGKAKLLMQA 219

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +     K 
Sbjct: 220 PKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKK 279

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 280 LNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 339

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 340 HAETYVHRVGRTARAGEQGVALSLV 364


>gi|312217179|emb|CBX97128.1| similar to pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Leptosphaeria maculans]
          Length = 815

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 188/367 (51%), Gaps = 32/367 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   + + GY   +++Q A +   L+ +D++  A TGSGKT AF L L    L   
Sbjct: 401 LPDKLMRIVEQVGYTEPSAIQRAAIPIALQCRDLIGVAVTGSGKTAAFILPL----LVYI 456

Query: 67  DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  P SA      P AL +APTRELA Q+  E     A  G   AV +GG S+  +   
Sbjct: 457 SQLPPLSAANRHDGPYALVLAPTRELAQQIEVEARKFAAPLGFNTAVIVGGHSIEEQSFQ 516

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           +Q GA I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P   
Sbjct: 517 MQAGAEIIIATPGRLVDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVNN 576

Query: 180 -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R+ +M++AT+  A+  +A+ Y +    V I +       ++
Sbjct: 577 EKPDSELAEDANAMKRGFYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVE 636

Query: 221 YRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            R   +   + R   +  IL     +   IVF + + +     + +    F  V L G  
Sbjct: 637 QRVEHIQGEERRKKRLQEILSSEEFRPPIIVFVNIKRNCDAIARDIKHMGFSAVTLHGSK 696

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q++R  AL  +++GR  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRA
Sbjct: 697 TQEQREAALASLKEGRTDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRA 756

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 757 GKSGVAI 763


>gi|261378955|ref|ZP_05983528.1| ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685]
 gi|269144656|gb|EEZ71074.1| ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC 14685]
          Length = 339

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 146/238 (61%)

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IVV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+
Sbjct: 7   DLRAGCEIVVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQ 66

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA+++      V +A++N  +++++   + V    + N +  ++
Sbjct: 67  RQTLLFSATFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLI 126

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC T+ SV + T+ L        A+ G+ SQQ R   L   +DG  RV +
Sbjct: 127 VDLHMPQVIVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLV 186

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           ATD+AARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E
Sbjct: 187 ATDIAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFE 244


>gi|229029843|ref|ZP_04185913.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
 gi|228731458|gb|EEL82370.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
          Length = 389

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 8/353 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I +     S +++  ++    ++++ +  I+ + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRI-TRAESKSLVEHTYIICERREKNDYVRRIM-HM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRSGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ Q  +R+
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERK 345


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 198 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 257

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 258 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 317

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 318 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 377

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 378 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 437

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 438 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 496

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 497 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 547


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 200/377 (53%), Gaps = 15/377 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK+ EN+ +     +   G+   +++Q   +   +R KDV+  AQ+G+GKT  F + +  
Sbjct: 28  MKLQENLLR----GIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + + +          AL ++PTRELA Q+ + +  L     VV   C GG ++ ++   
Sbjct: 84  VIDSSSKDLQ------ALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPK 178
           +  G H++ GTPGR+ D I+ + +N  H+K +VLDEADE+L   LGF+  +  I    P 
Sbjct: 138 VNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPS 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
             ++++ SAT+S  +  + K +  D V++ +  +      I    + V   + + + + +
Sbjct: 198 SVQVVVVSATMSKDVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+T+  V   +  L ++ F V ++ G++ Q +R   +   R G +RV
Sbjct: 258 LYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    + +
Sbjct: 318 LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK 377

Query: 358 RLFREANVSVVWEPAPS 374
            +  E + S+  +P P+
Sbjct: 378 SI--EKHYSIKIKPMPA 392


>gi|296411733|ref|XP_002835584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629370|emb|CAZ79741.1| unnamed protein product [Tuber melanosporum]
          Length = 388

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 19/337 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + ++VQ   +    + +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 44  GYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVI------DTAVRETQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+   +  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 98  VLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  +  
Sbjct: 158 IRRRNLRTKHIKMLVLDEADELLNRGFREQIYDVYRYLPPSTQVVVVSATLPYDVLDMTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      +    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V A+ GE+ Q+ER   +Q  R G +RV I+TDV ARGID+  + L  
Sbjct: 278 DWLTEKMREANFTVSAMHGEMPQKERDAIMQEFRQGNSRVLISTDVWARGIDVQQVSL-- 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
                    N +HR GR+GR GRKG+++ FV  ++++
Sbjct: 336 ---------NYIHRIGRSGRFGRKGVAINFVTSEDVR 363


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 192/365 (52%), Gaps = 17/365 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 245 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 303

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL  G
Sbjct: 304 PPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 363

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 364 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 423

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQ----HSDIDYRAVLVALSDRDN 233
           +SAT    +  LA ++  D +++NI S N       RQ     ++I+    LV L +  +
Sbjct: 424 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEIS 483

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I N          IVF  T+  V    +++    +   ++ G+ +Q ER + L+  R+G
Sbjct: 484 PIKN--SGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNG 541

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N 
Sbjct: 542 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 601

Query: 353 QRRAE 357
           ++  E
Sbjct: 602 KQARE 606


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 172/315 (54%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D +  AQ+G+GKT  F + +   +  ++          AL ++PTRELA+Q+   +  L
Sbjct: 64  RDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQ------ALILSPTRELAIQIQNVVMHL 117

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +    CIGG +V  + + LQ G  IV GTPGR+ D I+ + L   ++K ++LDEA
Sbjct: 118 GDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEA 177

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           DE+   GF++ I  I    P   ++++ SAT+   +  +   +  D V++ +  +    S
Sbjct: 178 DELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLS 237

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            I    V     D + + + ++        A++FC+T+  V+     + +  F VVA+ G
Sbjct: 238 GIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHG 297

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q ER + +   R G +RV I+TDV ARGID+  + LVI+ +L ++ EN +HR GR+G
Sbjct: 298 DMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSG 357

Query: 337 RAGRKGMSVFVIPQN 351
           R GRKG ++ +I ++
Sbjct: 358 RFGRKGTAINLITKD 372


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 193/365 (52%), Gaps = 17/365 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 244 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 302

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL  G
Sbjct: 303 PPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 362

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 363 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 422

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQ----HSDIDYRAVLVALSDRDN 233
           +SAT    +  LA ++  D +++NI S N       RQ     ++I+    LV L +  +
Sbjct: 423 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLLNEIS 482

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I N    +     IVF  T+  V    +++    +   ++ G+ +Q ER + L+  R+G
Sbjct: 483 PIKN--SGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRNG 540

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           ++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N 
Sbjct: 541 KSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNA 600

Query: 353 QRRAE 357
           ++  E
Sbjct: 601 KQARE 605


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 185/372 (49%), Gaps = 29/372 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+P+ + E +   GY   T +Q A +    + +D++  A TGSGKT AF L L   +  L
Sbjct: 275 NLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISEL 334

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                F+    P AL +APTREL  Q+  E        G  V   +GG S+  +   L+N
Sbjct: 335 PPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRN 394

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GA I+V TPGRL D +  + L  S    +++DEAD M+D GF + +  ILD+ P      
Sbjct: 395 GAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEKP 454

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              + R+ +M++AT+ P +  +AK Y +    V I +       
Sbjct: 455 DTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAGEAVDT 514

Query: 219 IDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           ++ R   V+  D R   +  IL     K   IVF + + +     K +    +  V L G
Sbjct: 515 VEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYSTVTLHG 574

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             +Q++R  +L  +R+G+A + +ATD+A RGID+ D+ LV++  + S+ E   HR GRTG
Sbjct: 575 SKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTG 634

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 635 RAGKSGVAITFL 646


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 180/343 (52%), Gaps = 2/343 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           YV  T +Q   +   L  +D++  A+TGSGKT+AF   +   ++ +         P+ L 
Sbjct: 262 YVQPTPIQSQAVPAALAGRDIIGIAKTGSGKTLAFIWPMLVHIM-DQPELKEGDGPVGLI 320

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+  E +       + V  C GG S   + + L+ GA I+VGTPGR+ D +
Sbjct: 321 LAPTRELSQQIYVEAKKFGKIYNLRVVCCYGGGSKWEQSKALEGGAEIIVGTPGRVIDLV 380

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +    N++ +  +VLDEAD M ++GF   +  I D     R+ L+FSAT    I  LA++
Sbjct: 381 KMSATNLTRVTFLVLDEADRMFNMGFEPQVRSICDHVRPDRQTLLFSATFKKKIEKLARD 440

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASVS 258
              D +R+        ++D+    +++  SD+   ++ N++++    + +VF + +    
Sbjct: 441 ILTDPIRIVQGDVGEANTDVAQIMLVMPQSDKCQWLLDNLVQFTSTGSILVFVTKKLDAE 500

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +    L+   ++V+ L G++ Q ER+  +   +     + +ATDVAARG+D+  +  V++
Sbjct: 501 QLASTLSLKEYEVLLLHGDMDQAERNKVITKFKKQEVNIMVATDVAARGLDIAHIRTVVN 560

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +++ + +   HR GRTGRAG KG +  ++       A  L R
Sbjct: 561 YDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPKDHEFAGHLVR 603


>gi|125606362|gb|EAZ45398.1| hypothetical protein OsJ_30047 [Oryza sativa Japonica Group]
          Length = 685

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/377 (33%), Positives = 192/377 (50%), Gaps = 14/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 111 ISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGT 170

Query: 67  DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + S  +     P  L + PTRELA QV  +  +  A  G+      GG     +   ++
Sbjct: 171 HKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIR 230

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  IVVGTPGR+ D +    LN   LK  VLDEADEML++GF DD+E IL       K 
Sbjct: 231 KGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKV 290

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYR--AVLVALSDRDNAIVN 237
           + L+FSATI   +  L+  + K   + V++  + +  +    R  A+    + R   I +
Sbjct: 291 QTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPD 350

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R Y      I+F  T+ S S  + ++A       AL G+++Q +R   L   R G+  
Sbjct: 351 IIRCYSRGGRTIIFTETKESASDLSGLIAGSR----ALHGDVAQAQREVILAGFRSGKFL 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +     +   
Sbjct: 407 VLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNV 466

Query: 357 ERLFREANVSVVWEPAP 373
            R+ RE+ V      AP
Sbjct: 467 NRIERESGVKFEHISAP 483


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 189/360 (52%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 124 FPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPSIVHINAQ- 182

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 183 PLLAPGDGPIVLVLAPTRELAVQIQQEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 241

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL      R+ LM+
Sbjct: 242 EVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMW 301

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  + ++ +   
Sbjct: 302 SATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLKHLEKVMD 361

Query: 244 AK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            K      ++F  T+      T++L +  +  +++ G+  Q ER   L   + G++ + +
Sbjct: 362 DKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMV 421

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ ++  VI+ +  +N E+ +HR GRTGRAG  G ++ +   +  ++A  L
Sbjct: 422 ATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGANGTAITLFTTDNAKQARDL 481


>gi|260857814|ref|YP_003231705.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|260870505|ref|YP_003236907.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|257756463|dbj|BAI27965.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|257766861|dbj|BAI38356.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|323155182|gb|EFZ41366.1| ATP-dependent RNA helicase rhlB [Escherichia coli EPECa14]
 gi|323177790|gb|EFZ63374.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1180]
          Length = 421

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKYRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 20/372 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 1   MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 61  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 232

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 233 LLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 292

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     
Sbjct: 293 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDW 352

Query: 351 NMQRRAERLFRE 362
           N+    ER  ++
Sbjct: 353 NLMSSVERYLKQ 364


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 182/345 (52%), Gaps = 4/345 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +       P+ L 
Sbjct: 274 YTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRE-LKAGDGPIGLI 332

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+ +E +       + V  C GG S   + + L++GA IVV TPGR+ D +
Sbjct: 333 LAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATPGRMIDLV 392

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    +  LA++
Sbjct: 393 KMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVEKLARD 452

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIV-NILRYHGAKNAIVFCSTRAS 256
              D +R+        ++D+    ++     S + N ++ N++ +  A + ++F + + +
Sbjct: 453 VLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLVEFLSAGSLLIFVTKKLN 512

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L    F V+ L G++ Q ER+  +   +       +ATDVAARG+D+P ++ V
Sbjct: 513 AEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVAARGLDIPHIKTV 572

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++ +++ + +   HR GRTGRAG KG++  ++ +  +  A  L R
Sbjct: 573 VNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDKEFAGHLVR 617


>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 449

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 187/350 (53%), Gaps = 19/350 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVS--------AQTGSGKTVAFGLALASTLLA 64
           +AL E  +   T +Q   +   +  +DV+ S        A TGSGKT+AF + +   L  
Sbjct: 17  QALEELKHTTPTEIQTGCIPQAIAGRDVIGSVWKLVIGIAPTGSGKTLAFAIPILHRLWD 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR-DLQN 123
               +       A  ++PTRELA Q+  + E L A  GV   V +GG     ++   L  
Sbjct: 77  NPQGY------FACVLSPTRELAYQISAQFEALGAAMGVRSVVIVGGDDDRVQQAVQLAQ 130

Query: 124 GAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             HI+V TPGRL DH+       I HL   VLDEAD +LDL F+ +I  I+ S PK+R  
Sbjct: 131 KPHIIVATPGRLHDHLNFHTTQPIIHLGLQVLDEADRLLDLDFQREITEIMQSIPKERCT 190

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR 240
            +FSAT++  ++ L +    D VRV+ AS  R    S +    +L  L +++  +V ++ 
Sbjct: 191 YLFSATMTANVSKLQRASLSDPVRVD-ASLFRYTTVSTLLQHYLLCPLVEKEVTLVYLIN 249

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T A     + +L    F+ V L GEL+Q +R       + G++R+ +A
Sbjct: 250 SLAQNLIIVFVRTVADAKCLSIILRSLGFEAVPLHGELTQSQRLGVFTRFKSGKSRILVA 309

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           TDVA+RG+D+P++++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q
Sbjct: 310 TDVASRGLDVPNVDVVINYDVPTHSKDYIHRVGRTARAGRAGKSILMVTQ 359


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|318062704|ref|ZP_07981425.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 633

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L   
Sbjct: 57  GLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASLAGG 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G 
Sbjct: 117 ---FTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGV 173

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 174 DILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLF 233

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  D +   + +     + + +  ++V   D+      I    G  
Sbjct: 234 SATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKG-- 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 292 RTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 352 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 411


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 201/372 (54%), Gaps = 20/372 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 1   MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 61  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 232

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 233 LLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 292

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     
Sbjct: 293 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDW 352

Query: 351 NMQRRAERLFRE 362
           N+    ER  ++
Sbjct: 353 NLMSSVERYLKQ 364


>gi|14334882|gb|AAK59619.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 563

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 182/353 (51%), Gaps = 20/353 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AEND 67
           + + + G+  +T VQEA L   L+ K++L  A+TG+GKTVAF L     ++     + ++
Sbjct: 93  KGIEDAGFKTMTVVQEATLPLILQGKNILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDN 152

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG-A 125
           R  P    + L + PTRELA Q   E   L      + V V IGG  +  E+R LQ    
Sbjct: 153 RHPPI---IVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPC 209

Query: 126 HIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGRL DHI    G    +  +K +VLDEAD +LD+GFR +IE I+ + PK+R+ 
Sbjct: 210 QILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQT 269

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT+S  +  +     ++D   VN   E     H  +    ++ +L    + +  +L
Sbjct: 270 FLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLL 329

Query: 240 RYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H   N     I+FC+T         +L +    V  +     Q  R+      R  ++
Sbjct: 330 KKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKS 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V ++
Sbjct: 390 IILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 442


>gi|73996618|ref|XP_863098.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 6 [Canis familiaris]
          Length = 806

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 185/369 (50%), Gaps = 37/369 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGS         LA     E
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSD--------LARW---E 445

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++     P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G 
Sbjct: 446 GSQWQINQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC 505

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P        
Sbjct: 506 EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDT 565

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  +
Sbjct: 566 DEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERV 625

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +  L++ S++   ++ IL        I+F + +       K L +  +    L G   
Sbjct: 626 EQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKG 685

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG
Sbjct: 686 QEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 745

Query: 340 RKGMSVFVI 348
           + G+++  +
Sbjct: 746 KSGVAITFL 754


>gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 398

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 183/341 (53%), Gaps = 1/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L +   +L+E+    
Sbjct: 12  ILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILE-ILSEDSTKV 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL + PTRELA+QV   ++       +      GGV    +++ L  G  ++V 
Sbjct: 71  RAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQRLIEGVDVLVA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P  R+ ++FSAT+S
Sbjct: 131 TPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFSATLS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK    + + ++I+ +      ID     V    +   + ++++ +    A++F
Sbjct: 191 DQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWDQALIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +   +  A     SQ+ R+  L   ++G+ +  +AT +AARGID+
Sbjct: 251 IETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVATGIAARGIDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L  V++ +L    ++ +HR GRTGRAG KG ++  + ++
Sbjct: 311 DELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKD 351


>gi|194468573|ref|ZP_03074557.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454937|gb|EDX43776.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 421

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 185/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++G+ N T +Q   L   L  + V   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKGFYNCTPIQALALPLTLAGRYVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 175/339 (51%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L++  Y   T +Q   +   L   D++  A TGSGKT  F L +   L  E      AS 
Sbjct: 23  LTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPMLQKLFLEQGAKKTASK 82

Query: 75  P---LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
                 L + PTRELA QV   ++   A   G +  V + GGVSV+ + + L+ GA I+V
Sbjct: 83  GNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGADIIV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++ ++FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +T L +    + V + + S++   S +  R   V   ++   + ++++ H  + A++
Sbjct: 203 PEQVTQLTQKLLTNPVEIQVQSKD--ESTLVQRVFTVNKGEKTTVLAHLIKEHKWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +         L +         G+  Q ER+  ++  + G   V IATD+AARG+D
Sbjct: 261 FVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAGEIEVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+  L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLI 359


>gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50]
          Length = 425

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 22  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 78

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 79  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 135

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 136 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 196 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 255

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 256 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 315

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 361


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/347 (34%), Positives = 185/347 (53%), Gaps = 11/347 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 248 VTKSGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 307

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++ GT
Sbjct: 308 VQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCGT 367

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           PGRL D I RGK + +S L+ ++LDEAD MLD+GF  D+  ++ S   P K  R+ LMFS
Sbjct: 368 PGRLLDIIGRGK-VGLSKLRYLILDEADRMLDMGFEPDMRKLVGSPGMPAKEDRQTLMFS 426

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA  + K D + + +       SD++   + V    +   ++ +L+  G +
Sbjct: 427 ATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQVDQYSKREQLLELLKTTGTE 486

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 487 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRTGQCPVLVATSVAA 546

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  ++ V++ +L +N +  +HR GRTGR G  G +V F  P++
Sbjct: 547 RGLDIEHVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFNPES 593


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 189/357 (52%), Gaps = 8/357 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHR 116
           + L   ++   P  +   + +APTRELA Q+ +++E   +    + V V     GV   +
Sbjct: 61  NKL---SEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA+N   +   V +A  ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAQNILHNPAEVKLAV-SKPAEKIVQAAYICYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQ 353


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 182/350 (52%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ I + L ++G    + +Q   L   L  +D++  A TGSGKT+ F L +    L E 
Sbjct: 116 IPRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPMVLFALEEE 175

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWL---YAKTG---VVVAVCIGGVSVHRER 118
            +        P  L ++P+RELA Q    +       AK G   +   + IGG+ +  + 
Sbjct: 176 KKLPIIQGEGPFGLILSPSRELARQTYDLVNSFTDSLAKDGFPKLRTLLAIGGIDMREQE 235

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  + G H++V TPGRL + ++ K +N +  K + LDEAD ++D GF DDI  +LD    
Sbjct: 236 QVFRKGIHMIVATPGRLLELLQKKKINFNLCKYLGLDEADRLIDFGFEDDIRSVLDHFTN 295

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A++     V VN+      + ++      V    +   ++  
Sbjct: 296 QRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLEC 355

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +  V    + L     + V++ G+ SQ+ER  A++  R+G+  V 
Sbjct: 356 LQ-KTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKAFREGKKDVL 414

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G KG++   I
Sbjct: 415 VATDVASKGLDFPDIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFI 464


>gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 416

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 185/347 (53%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP ++ E L    Y   T +Q   +   L  +D++  A TGSGKT AF L +   +L + 
Sbjct: 16  IPTLV-ERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQKILQQG 74

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
             NDR     + L L   PTRELA QV   ++    + +  +      GGVSV+ +   L
Sbjct: 75  ESNDRRGNFVSHLILV--PTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLAL 132

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P+K++
Sbjct: 133 RGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQ 192

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    +TTLA++   D V V + S   + S +  R   V   ++   + ++++ 
Sbjct: 193 TLLFSATFPEKVTTLAQHLLNDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKK 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IAT
Sbjct: 251 HQWRQILIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 311 DIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469]
 gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
 gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227]
 gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v]
 gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 181/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|241763727|ref|ZP_04761775.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241367032|gb|EER61417.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 612

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 195/387 (50%), Gaps = 51/387 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL-------REKDVLVSAQTGSGKTVAFGLALAS 60
           P+++ +A+++ GY   TSVQ   +   +       R  D++VS+QTGSGKT AF L +  
Sbjct: 49  PELV-QAVADLGYTQPTSVQLKAIPLAMGAGDDAKRFIDLMVSSQTGSGKTAAFLLPVLH 107

Query: 61  TLLAE------------------------------------NDRFSPASAPLALAIAPTR 84
           TL+ +                                    N R   A+ P AL + PTR
Sbjct: 108 TLIQQQAEAEAEERAAFERAVAEAAVRGEPAPKRAKRKDPTNARNFKAATPGALILCPTR 167

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + ++ +    G+ VA  +GG+    +   LQN A++VV TPGRL D  R   
Sbjct: 168 ELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKLQN-ANLVVATPGRLLDLQRSMQ 226

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 227 IKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTSQRKQTMMFSATFAPRIQQLAMRVMHD 286

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVS 258
                 +V I S   +H++I         +     +++  LR      AIVF ST+    
Sbjct: 287 GGASVQKVTIDSPQEKHANIKQMLYWADNAQHKRKLLDHWLRDTTINQAIVFASTQVECD 346

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V +
Sbjct: 347 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAARGIDVPTITHVFN 406

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
             L    E+  HR GRTGRAGR G+++
Sbjct: 407 FGLPMKAEDYTHRIGRTGRAGRDGLAI 433


>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 443

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 185/349 (53%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+         +
Sbjct: 68  -DYPRRKPG-APRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVFNS 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+++     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R  V   +  L +   +   L G+++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEKVSRGIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 187/343 (54%), Gaps = 10/343 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   T +Q       L+ +D++  A+TGSGKT+  G  + + +  + 
Sbjct: 152 FPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTL--GYLMPAFIHLQQ 209

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R +P   P  L ++PTRELA Q+  E    + K+  +   C+ GG     + R+L  G 
Sbjct: 210 RRKNPQLGPTILVLSPTRELATQIQAEAV-KFGKSSRISCTCLYGGAPKGPQLRELSRGV 268

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM+
Sbjct: 269 DIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMY 328

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           +AT    +  +A +   ++V+VNI +  E   +  I     +V   ++   +  ILR   
Sbjct: 329 TATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQILRSKE 388

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    + ++ L  + F   A+ G+ SQ ER   L   R GR+ V +AT
Sbjct: 389 PGSK-IIIFCSTKKMCDQLSRNLTRN-FGAAAIHGDKSQGERDYVLSQFRAGRSPVLVAT 446

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           DVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++
Sbjct: 447 DVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLA 489


>gi|68468064|ref|XP_721871.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
 gi|74656630|sp|Q5AK59|HAS1_CANAL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46443813|gb|EAL03092.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
          Length = 565

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 109 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 168

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +   +  P +    + I PTRELA+Q   V REL   +++T     + IGG    +E
Sbjct: 169 LLYSL--KIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT---CGIVIGGADRRQE 223

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P
Sbjct: 224 ATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLP 283

Query: 178 -KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNA 234
            + R+ ++FSAT +  +  LA+ + +   + +N+  E +   +D   +  +V  SD+   
Sbjct: 284 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFL 343

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + 
Sbjct: 344 LLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNA 403

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQN 351
           +  + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+ F+ P  
Sbjct: 404 KQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 463

Query: 352 M 352
           +
Sbjct: 464 L 464


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 202/398 (50%), Gaps = 44/398 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P V+ E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   ++A   
Sbjct: 172 PAVM-ENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPIIQHIMAGGP 230

Query: 67  DRFSPASA-----------------------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
           D     S+                       P AL ++PTRELA+Q+ +E      KT +
Sbjct: 231 DMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNL 290

Query: 104 VVAVCIGGVSVHRERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
             A+  GG   +R++ + L++G HI++ TPGRL D I    + +S  + +VLDEAD MLD
Sbjct: 291 QTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLD 350

Query: 163 LGFRDDIEFILDSS--PKK-RRMLMFSATISPAITTLAKNYQKDAV------RVNIASEN 213
           +GF   I  I+     PK  R   MFSAT    I  LAK++ K+        RV   SEN
Sbjct: 351 MGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSEN 410

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVV 272
                I+ R + V   ++   +++IL    A N  +VF  T+   +     L     + V
Sbjct: 411 -----IEQRLLWVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQQIRSV 465

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           ++ G+L Q ER   L+M R G+  + +AT VAARG+D+P++  V++ +L  + +  +HR 
Sbjct: 466 SIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRI 525

Query: 333 GRTGRAGRKGMSV-FVIPQN--MQRRAERLFREANVSV 367
           GRTGR G  G++  F   +N  + R  + L  EAN  V
Sbjct: 526 GRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEV 563


>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 422

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 177/340 (52%), Gaps = 7/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +S +G+   T +Q   +   L  ++++  AQTG+GKT AF L +   LL    R +  
Sbjct: 14  QNVSAQGFTQPTPIQAQTIPLALSGQNLIGLAQTGTGKTAAFVLPILQRLLQNRQRGT-- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+   +  L   TG+  A   GGV +  + R L+ G  IVV  P
Sbjct: 72  ---QALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYGGVGMEPQERALRAGVEIVVACP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+      +  ++ +VLDEAD MLD+GF   I+ IL + P +R+ ++FSAT+   
Sbjct: 129 GRLIDHLGRGSARLDGVQMLVLDEADRMLDMGFLPAIQRILSALPTRRQTMLFSATLPAE 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LA      A  V I      H+ I +    V    +   ++++L    + + +VF  
Sbjct: 189 LQQLAATTAPHAKLVQIGLVRPAHT-ITHAIYPVPPHRKTALLLDLLHKANSGSVLVFTR 247

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +R  + +A        L    SQ +R  AL   RDGR R+ +ATD+AARG+D+  
Sbjct: 248 TKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILVATDIAARGLDVER 307

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +  VI+ ++   P+  +HR GRTGRA R G +   V P++
Sbjct: 308 ISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPED 347


>gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
 gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
          Length = 427

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 24  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 80

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 81  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 137

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 138 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 198 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 258 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 318 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 363


>gi|218890286|ref|YP_002439150.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770509|emb|CAW26274.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 446

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 22/373 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 66  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRD 232
           + L+FSAT S A     I  + +  Q   +R+N     SEN +   I    V    + ++
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELSENVRQQVITADDV----AHKE 236

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ 
Sbjct: 237 QLLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQ 296

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G  ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I    
Sbjct: 297 GAVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGD 356

Query: 351 -NMQRRAERLFRE 362
            N+    ER  ++
Sbjct: 357 WNLMSSVERYLKQ 369


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 179/342 (52%), Gaps = 16/342 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S          P        
Sbjct: 206 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFG 265

Query: 73  ----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++
Sbjct: 266 RQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLL 325

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLM 184
           V TPGRL D I    +++ ++K ++LDEAD MLD+GF   I  I++     +   R+ LM
Sbjct: 326 VATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLM 385

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+++ KD V +++        +I  +   V   D+ + +++IL  HG 
Sbjct: 386 FSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGT 445

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+      ++ L    F   A+ G+ +Q+ER  AL+M R GR  + +AT V
Sbjct: 446 TGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAV 505

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 506 AARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 547


>gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT]
 gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
 gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT]
          Length = 561

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 174/330 (52%), Gaps = 6/330 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P +   DV+  AQTG+GKT A+ L +   +L+     +P      L
Sbjct: 20  GYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQKMLS-----TPRGRVRTL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA Q+      L  +  +      GGV++ ++ R L++G  +VV  PGRL DH
Sbjct: 75  VIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDH 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    +++  ++ +++DEAD M D+GF+ DI+ IL    +  + L+FSAT+ P +  L  
Sbjct: 135 IWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTL 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
             Q + V V + +++   S       + +   +   ++ IL+    K+ ++F  T+    
Sbjct: 195 ETQTNPVTVQVGTQSPVSSVSHSVYPVKS-HQKTPLLLEILKTVETKSVLIFARTKYGAE 253

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                +++  F   +L G LSQ  R   ++  R G  ++ +ATD+AARG+D+  +  VI+
Sbjct: 254 NLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVIN 313

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++  +PE+  HR GRTGR  R G +  ++
Sbjct: 314 YDMPDSPEDYTHRIGRTGRFDRTGQAFSLV 343


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 189/369 (51%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  +   +  +G+   TS+Q       L   +++  AQTGSGKT+A+ L  A   +  
Sbjct: 66  SFPDYVMTEIRRQGFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLP-AIVHINH 124

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+AL +APTRELA Q+    +   + + +      GG     + RD++ G 
Sbjct: 125 QPYLEPGDGPIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIERGV 184

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+
Sbjct: 185 EIMIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMW 244

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA 244
           SAT    +  LA+ +  D +++N+ S     +    + + V    +++  ++ +L+  GA
Sbjct: 245 SATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQEIGA 304

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           ++    I+F  T+  V   T+ +    +  + + G+ +Q ER   L   R G+A + +AT
Sbjct: 305 EDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILVAT 364

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR+ R G +      N  ++A+ L  
Sbjct: 365 DVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQAQDLVN 424

Query: 360 -FREANVSV 367
              EAN  V
Sbjct: 425 VLTEANQVV 433


>gi|318081433|ref|ZP_07988765.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 488

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L   
Sbjct: 57  GLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASLAGG 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G 
Sbjct: 117 ---FTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGV 173

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 174 DILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLF 233

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  D +   + +     + + +  ++V   D+      I    G  
Sbjct: 234 SATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKG-- 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 292 RTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 352 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 411


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 187/347 (53%), Gaps = 9/347 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K FE++     ++G A+S++GY   T +Q       L  +D++  A+TGSGKT AF L 
Sbjct: 233 VKTFEDLGFDASLMG-AISKQGYERPTPIQCQSCPIVLSGRDLIGIAKTGSGKTAAFVLP 291

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++ +         P+ +  APTRELA Q+  E +      G+ ++   GG+S   +
Sbjct: 292 MMVHIM-DQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQ 350

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L+ G  +VV TPGRL D I+ K L++     +VLDEAD M DLGF   I  I+    
Sbjct: 351 FKELKAGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIR 410

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--- 234
             R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     
Sbjct: 411 PDRQTLLFSATMPKRVERLAREILTDPIRVTVGEIGSANEDI-TQVVTVLPSDAEKTPWL 469

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +  +    + +VF ST+  V      ++E  F+V AL G+  Q  R   LQ  ++G 
Sbjct: 470 LDRLQPFVDDGDVLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGI 529

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
             + +ATDVAARG+D+  ++ V++ +++ + ++ +HR GRTGRAG K
Sbjct: 530 YHILVATDVAARGLDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDK 576


>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
          Length = 447

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 11/335 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   + P L  +D + +A+TGSGKT+AF L +   L  +           AL + PT
Sbjct: 28  TPIQTNCIPPILAGRDCIGAAKTGSGKTLAFALPILQKLCED------PYGIFALILTPT 81

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  +   +     +   V +GG+ +  + +DL    HIVV TPGRL DH+    
Sbjct: 82  RELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGKDLARKPHIVVATPGRLADHLESCN 141

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
             N + L+ +VLDEAD +L   F + I+ I  + PK+R+ L FSATI+  +  L     K
Sbjct: 142 TFNFNKLRFLVLDEADRLLGGHFDEQIKTIFQALPKERQNLFFSATITDTLEKLKDVTGK 201

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASVSR 259
           D       +E      ++   VL     +D  +V  +R + A N    ++F +T  +   
Sbjct: 202 DVFFYEAPAEVATVEQLEQNYVLCPKDVKDAYLVETIRTYRATNDGNILIFTNTCKNCQV 261

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            +  L E  F+ VAL   + QQ+R  AL   +    ++ +ATDVA+RG+D+P ++LVI+ 
Sbjct: 262 LSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTIKILLATDVASRGLDIPTVQLVINH 321

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +   P+  +HR GRT RAGR G ++  V P +++
Sbjct: 322 NIPKIPKEYIHRVGRTARAGRNGKAISLVTPYDIK 356


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/349 (35%), Positives = 182/349 (52%), Gaps = 13/349 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAE 65
            P+ +  AL  +GY   T +Q       L+ KDV+  A+TGSGKT  F L ALAS +   
Sbjct: 10  FPKPLRAALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALASIMQLL 69

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + R+ P A  P  + +APTRELA+Q+  E        G   AV  GG +   + R L++G
Sbjct: 70  DGRWRPGAVTPTVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRSG 129

Query: 125 AHIVVGTPGRLCDHIR---GKGLNISHLKA--VVLDEADEMLDLGFRDDIEFILDSSPKK 179
           A +VV TPGRL D +    G    +S +KA  VVLDEAD MLD+GF   I+ I    P  
Sbjct: 130 ADVVVATPGRLNDFLEPPPGFTAPVSAVKASYVVLDEADRMLDMGFEPQIKKIFKLCPSA 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIV 236
           R+ +MF+AT   A+  +A ++    + + I S   +   +  I     ++   ++ +  V
Sbjct: 190 RQTVMFTATWPKAVQKIADSFTTKPIHIQIGSGGDKLTANKSITQTVEVLEEEEKFDRCV 249

Query: 237 NILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDG 293
            IL+    K+   I+F  T+       + L +  F    A+ G+  Q ER   L   R G
Sbjct: 250 AILKKELGKDDTCIMFAGTKRRCDFLDRRLKQSGFSSAGAIHGDKDQYEREMVLDNFRRG 309

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  + +ATDVAARG+D+P +  V+  +     E+ +HR GRTGRAG++G
Sbjct: 310 RGNILVATDVAARGLDIPGVAAVLVYDFPLQVEDYVHRIGRTGRAGKEG 358


>gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens]
          Length = 439

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L +   LL    + S  
Sbjct: 17  DALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L A T + +A   GGV+             +VV T 
Sbjct: 75  GPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   K+ V V      R+   I    YRA  V    +   ++++L+    + ++
Sbjct: 195 AIREFAERILKEPVEVEADPSRRERKKILQWYYRADDV--QHKTALLIHLLKQPDVQKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLV 352


>gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
 gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 198/376 (52%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A
Sbjct: 149 LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPA 207

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + + CI GG     + 
Sbjct: 208 IVHIIHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQI 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 267 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ 
Sbjct: 327 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIL 386

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 387 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGK 446

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 447 ASILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 506

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 507 QASDLISVLREANQAI 522


>gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 612

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 188/363 (51%), Gaps = 5/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   
Sbjct: 34  GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGG 93

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 94  R---TEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGV 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 151 DILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL   Y  D V   + +     + + +  ++V   D+      I    G  
Sbjct: 211 SATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAIASRKG-- 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 269 RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 329 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQIFRLMEDAGV 388

Query: 366 SVV 368
             +
Sbjct: 389 DAM 391


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 16/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ+  +   L ++D++  AQTGSGKT AF + + + +    D       PLAL 
Sbjct: 104 YTCPTPVQKHAIPIILAKRDLMACAQTGSGKTAAFLVPILNQVF--EDGPPKNQYPLALI 161

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA Q+  E      ++ V   V  GG    ++ +DL  G H++V TPGRL D +
Sbjct: 162 LSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQMKDLDRGCHLLVATPGRLVDMM 221

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFSATISPAITT 195
               +++  ++ +VLDEAD MLD+GF   I  I+  D+ P   +R+ LMFSAT    +  
Sbjct: 222 ERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNMPPVGQRQTLMFSATFPKKVQE 281

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--------- 246
           LA+ +  + + + +        +I  + V V   D+ + ++++L   G +          
Sbjct: 282 LARKFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSFLLDLLNAAGLRTGSQAALSDS 341

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             + F  T+         L +  + V ++ G+ SQ+ER +AL   R G   + +AT VAA
Sbjct: 342 LTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQREREDALWSFRKGHTPILVATAVAA 401

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 402 RGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 441


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 183/350 (52%), Gaps = 14/350 (4%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   P+ + E + + G+ + T +Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 71  FEDVYCFPRPLQELIVKAGFPSPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPAII 130

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+       S P  L +APTREL  Q+  +       +G+  A   GG   + ++  
Sbjct: 131 HILAQ---LKQNSDPQCLIMAPTRELTHQIYEQFIKFSVGSGLKAACLFGGQEKYIQKNQ 187

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+  +  +R
Sbjct: 188 LNQHPHILIACPGRLIDLVESGCTTLKGITFLVLDEADRMLDMGFEPSIRKIVAQTRAER 247

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAI 235
           + ++FSAT    + +LA ++  +  + + I S     NRQ   I  + +++    ++  +
Sbjct: 248 QTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQ---IQQKVLILTKEQKEEKL 304

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G K  ++FC T+    +    L +   +  +L G+  Q ER   +   + G  
Sbjct: 305 REILKSLGPKKILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDT 364

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V +ATDVA+RG+D+ D+E VI+ ++    E+ +HR GRTGRAG +G+S+
Sbjct: 365 TVLVATDVASRGLDIKDIEFVINFDMPKLIEDYVHRIGRTGRAGAQGVSI 414


>gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 402

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 171/341 (50%), Gaps = 23/341 (6%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL--------- 76
           +QE  +   L   DV+  AQTG+GKT AF L +   L++      PA++ L         
Sbjct: 1   MQEQAIPLALTGVDVMAGAQTGTGKTAAFALPMLHRLMS-----YPAASELHADEAEQTE 55

Query: 77  ---------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                     L + PTRELA QV   +      T + V V  GG S++ + + LQ GA I
Sbjct: 56  QRKQPALIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVVVAYGGTSMNVQVKALQQGADI 115

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL DH+    L++ +L+  VLDEAD MLD+GF  DI+ I+     +R+ L FSA
Sbjct: 116 VIATPGRLIDHMHVGTLSLKYLECFVLDEADRMLDMGFIIDIKRIMKRMAAERQTLFFSA 175

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  +  LA +   +   V +   N     +      V    +   +  ++     +  
Sbjct: 176 TFSKQVKKLAFDIMTEPKMVEVTPANTAAETVQQMVYPVDKHRKRELLSYLIGSRNWQQV 235

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  +ATDVAARG
Sbjct: 236 LVFTKTKQGSDELVKELGLDGIKAASINGDKSQGARQRALDDFKSGKVRALVATDVAARG 295

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  LE V++ ++   PE+ +HR GRTGRAG  G ++ ++
Sbjct: 296 IDIEQLEYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLM 336


>gi|238882849|gb|EEQ46487.1| hypothetical protein CAWG_04842 [Candida albicans WO-1]
          Length = 569

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 113 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 172

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +   +  P +    + I PTRELA+Q   V REL   +++T     + IGG    +E
Sbjct: 173 LLYSL--KIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT---CGIVIGGADRRQE 227

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P
Sbjct: 228 ATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLP 287

Query: 178 -KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNA 234
            + R+ ++FSAT +  +  LA+ + +   + +N+  E +   +D   +  +V  SD+   
Sbjct: 288 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFL 347

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + 
Sbjct: 348 LLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNA 407

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQN 351
           +  + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+ F+ P  
Sbjct: 408 KQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 467

Query: 352 M 352
           +
Sbjct: 468 L 468


>gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39]
 gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|269968536|ref|ZP_06182542.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269826871|gb|EEZ81199.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 372

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IP ++ E L    Y   T +Q   + PD+ E KD++  A TGSGKT AF L +   ++ +
Sbjct: 16  IPTLV-ERLEALEYSQPTPIQSRSI-PDILEGKDIIGGANTGSGKTAAFSLPILQKIVQQ 73

Query: 66  NDRFSPASAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++  +     ++ L + PTRELA QV   ++    + +  +      GGVSV+ +   L+
Sbjct: 74  DESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALR 133

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P+K++ 
Sbjct: 134 GGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQT 193

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT    +TTLA+   +D V V + S   + S +  R   V   ++   + ++++ H
Sbjct: 194 LLFSATFPDKVTTLAQQLLRDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKQH 251

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IATD
Sbjct: 252 QWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATD 311

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 312 IAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 446

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 182/342 (53%), Gaps = 2/342 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           +   P+++  AL    Y  +T VQ+  +    R KD+L +AQTG+GKT AF L +   + 
Sbjct: 6   YSFTPEIL-RALDACNYDQMTPVQQQAIPAAGRGKDILANAQTGTGKTAAFALPILQQI- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+  +   + +  AL + PTRELA QV   ++       + V    GGV +  + + L+ 
Sbjct: 64  ADTPKDIHSGSVRALILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTKQLKQ 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++V TPGRL +H++    N+++++ +VLDEAD MLD+GF  DI  IL+S     + +
Sbjct: 124 GVDVLVATPGRLLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISNDFQTM 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA       V V+ + EN   S I +    V    +   +  ++    
Sbjct: 184 LFSATLSQQMKHLANELLTSPVIVSASKENSTASTIKHVIHPVEQRRKQELLSELIGTKN 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  +VF +T+ + +   K L     +     G+  Q  R  AL   ++G+ R  +ATDV
Sbjct: 244 WKQVLVFVNTKEAANNIVKELKLDGIKADVCHGDKGQGARRRALTEFKEGKIRALVATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  L+ V++ +L    E+ +HR GRTGRAG  G +V
Sbjct: 304 AARGLDVQGLKYVVNYDLPFLAEDYIHRIGRTGRAGETGNAV 345


>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
          Length = 1028

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 191/365 (52%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 379 EVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLADG 437

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 438 DGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 497

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 498 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 557

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  LA+      V V +   +    D++   V++    +   ++ IL ++  K +I+
Sbjct: 558 PRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSII 617

Query: 250 -FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 618 IFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARGL 677

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ V
Sbjct: 678 DVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAGV 737

Query: 369 WEPAP 373
             P P
Sbjct: 738 PVPEP 742


>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
 gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 441

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 175/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+    + S  
Sbjct: 17  DALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +     A T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + + +      R+   I    YRA    L  +   + + L+      +I
Sbjct: 195 AIKDFAERLLNEPIEIESDPSRRERKKILQWYYRAD--DLKHKTALLCHQLKQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATD+AARGI
Sbjct: 253 IFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG ++  +
Sbjct: 313 DIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFV 352


>gi|206578204|ref|YP_002241152.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288937791|ref|YP_003441850.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290513187|ref|ZP_06552549.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
 gi|226739540|sp|B5XYY9|RHLB_KLEP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|206567262|gb|ACI09038.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288892500|gb|ADC60818.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289774398|gb|EFD82404.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PAVI-EALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSI 357


>gi|125564407|gb|EAZ09787.1| hypothetical protein OsI_32075 [Oryza sativa Indica Group]
          Length = 685

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 194/380 (51%), Gaps = 16/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 111 ISEPLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGT 170

Query: 67  DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + S  +     P  L + PTRELA QV  +  +  A  G+      GG     +   ++
Sbjct: 171 HKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIR 230

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  IVVGTPGR+ D +    LN   LK  VLDEADEML++GF DD+E IL       K 
Sbjct: 231 KGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKV 290

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYR--AVLVALSDRDNAIVN 237
           + L+FSATI   +  L+  + K   + V++  + +  +    R  A+    + R   I +
Sbjct: 291 QTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPD 350

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R Y      I+F  T+ S S  + ++A       AL G+++Q +R   L   R G+  
Sbjct: 351 IIRCYSRGGRTIIFTETKESASDLSGLIAGSR----ALHGDVAQAQREVILAGFRSGKFL 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +     +   
Sbjct: 407 VLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNV 466

Query: 357 ERLFREANVSV--VWEPAPS 374
            R+ RE+ V    +  P P+
Sbjct: 467 NRIERESGVKFEHISAPQPT 486


>gi|91084021|ref|XP_975350.1| PREDICTED: similar to pre-mRNA-splicing ATP-dependent RNA helicase
           PRP28 [Tribolium castaneum]
 gi|270008001|gb|EFA04449.1| hypothetical protein TcasGA2_TC014753 [Tribolium castaneum]
          Length = 762

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 184/361 (50%), Gaps = 28/361 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70
           E + + GY   T +Q   +   ++ +D++  A+TGSGKT+AF + L S +  L + +R  
Sbjct: 349 EIIDKVGYKEPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERTE 408

Query: 71  PA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A   P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ G  IV+
Sbjct: 409 DADQGPYAIILAPTRELAQQIEEETVKFGQPLGIRTVVVVGGLSREEQGFRLRMGCEIVI 468

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177
            TPGRL D +  + L ++    +V+DEAD M+DLGF  D++ IL+  P            
Sbjct: 469 ATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDLGFEADVQKILEYMPVTNLKPDSEEAE 528

Query: 178 -------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                        K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    ++    
Sbjct: 529 DSKIILANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGKPTERVEQIVH 588

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           ++  +D+   ++  L        I+F + +       K L +  +    L G   Q++R 
Sbjct: 589 IMTENDKRKKLMEYLSKGVDPPIIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQRE 648

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRAG+ G++
Sbjct: 649 YALASLKSGAKDILVATDVAGRGIDIKDVSVVINYDMAKTIEDYTHRIGRTGRAGKSGVA 708

Query: 345 V 345
           +
Sbjct: 709 I 709


>gi|229172846|ref|ZP_04300400.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
 gi|228610591|gb|EEK67859.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
          Length = 389

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 8/353 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I +     S +++  ++    ++++ +  I+ + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRI-TRAESKSLVEHTYIICERREKNDYVRRIM-HM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ Q  +R+
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERK 345


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 16/357 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ++ L   ++E+D++  AQTGSGKT AF   + S++L +     PA+      
Sbjct: 393 YTRPTPVQKSALPIIMKERDLMACAQTGSGKTAAFLFPIISSILLDGAPEPPAAYRPGVP 452

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL +APTRELA Q+  E       + V   V  GG  + ++  +L  G  I+V 
Sbjct: 453 RPVHPRALVLAPTRELAQQIYEESVKFSYGSPVASVVVYGGAEISQQIAELDRGCDILVA 512

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFS 186
           T GRL D +    +++S +K +VLDEAD MLD+GF   I  I+        K R+ LMFS
Sbjct: 513 TTGRLVDLLSRGRVSLSQVKFLVLDEADRMLDMGFEPQIRQIIQDHDLPCNKDRQTLMFS 572

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA ++  + + + +        +I  R   V   ++++ +++ L       
Sbjct: 573 ATFPKPIQNLASDFLDNYIFLKVGVIGTTQ-NITQRIEYVPDDEKNSTLLDFLETLTKSQ 631

Query: 247 AI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           A+  +F  T+      T  L    +    + G+LSQ ER +AL   R G     +ATDVA
Sbjct: 632 ALTLIFVETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERESALNSFRSGNTPFLVATDVA 691

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +RG+ +P++  VI+ +L ++    +HR GRTGRAG+KG ++    +  +  A+ LF+
Sbjct: 692 SRGLHIPNVMHVINYDLPNDVHVYVHRIGRTGRAGKKGNAISFFNEKNKPIAQELFQ 748


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 187/344 (54%), Gaps = 12/344 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   + +Q       L+  D++  A+TGSGKT+  G  L   +L +N
Sbjct: 168 FPSEILREVQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTL--GYLLPGFILVKN 225

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R +    P  L ++PTRELA Q+  E    + ++  + + C+ GG     + RDL+ GA
Sbjct: 226 LRHNSRDGPTVLVLSPTRELATQIQDEA-IKFGRSSRISSTCLYGGAPKGPQLRDLERGA 284

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF
Sbjct: 285 DIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMF 344

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +AT    +  +A +   + V+VNI + +      S   Y  V  ++ ++   +  ILR  
Sbjct: 345 TATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQYVEVTTSM-EKGRRLDQILRQQ 403

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G+K  I+FCST+    + ++ L+   +   A+ G+ SQ ER + L   R GR  + +A
Sbjct: 404 EPGSK-VIIFCSTKRMCDQLSRNLSRQ-YGASAIHGDKSQAERDSVLSEFRTGRCPILVA 461

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 462 TDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIA 505


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 182/357 (50%), Gaps = 6/357 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +     LL +  R 
Sbjct: 13  ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLL-DFPRR 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P  A + L + PTRELA+QV  + + L   T + +    GGV        L     IVV
Sbjct: 72  KPGPARI-LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+
Sbjct: 131 ATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSATL 190

Query: 190 SP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +     +  KD   V+     R+   I               ++  +    A+ +I
Sbjct: 191 EGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERSI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARGI
Sbjct: 251 VFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           D+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 311 DVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|241956021|ref|XP_002420731.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223644073|emb|CAX41816.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 556

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  + +    A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 100 LFENADLSEPTMRAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 159

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +   +  P +    + I PTRELA+Q   V REL   +++T     + IGG    +E
Sbjct: 160 LLYSL--KIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT---CGIVIGGADRRQE 214

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P
Sbjct: 215 ATKLSKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLP 274

Query: 178 -KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNA 234
            + R+ ++FSAT +  +  LA+ + +   + +N+  E +   +D   +  +V  SD+   
Sbjct: 275 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFL 334

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + 
Sbjct: 335 LLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNA 394

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQN 351
           +  + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+ F+ P  
Sbjct: 395 KQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 454

Query: 352 M 352
           +
Sbjct: 455 L 455


>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Acyrthosiphon pisum]
          Length = 771

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 198/370 (53%), Gaps = 14/370 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +A+S   YV+ T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 171 NISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLPILERLLYR 230

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+P +  L L   PTREL VQV +  + L   T V V + +GG+ +  +   L+   
Sbjct: 231 PKGFTPITRVLVLV--PTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQESILRKNP 288

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH++     +++ L+ +VLDEAD MLD  F D ++ I++   + R+ ++
Sbjct: 289 DVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCARTRQTML 348

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVAL-----SDRDNAIVN 237
           FSAT++ A+  LA       V++ + S    ++D+ +  R   V L      DRD  +  
Sbjct: 349 FSATMTDAVNDLATVSLSKPVKIFVDS----NTDVAFNLRQEFVRLRQGKEQDRDATLAA 404

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++      + ++F  T+A   R   +L     +   L G LSQ +R  AL+  +D    +
Sbjct: 405 LVCRTFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDL 464

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  +
Sbjct: 465 LIATDVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDRKVLK 524

Query: 358 RLFREANVSV 367
            + R+A   V
Sbjct: 525 EVIRKAKNPV 534


>gi|6323947|ref|NP_014017.1| Has1p [Saccharomyces cerevisiae S288c]
 gi|2500537|sp|Q03532|HAS1_YEAST RecName: Full=ATP-dependent RNA helicase HAS1; AltName:
           Full=Helicase associated with SET1 protein 1
 gi|530347|emb|CAA56799.1| RNA helicase [Saccharomyces cerevisiae]
 gi|151945998|gb|EDN64230.1| helicase associated with set1 [Saccharomyces cerevisiae YJM789]
 gi|190408516|gb|EDV11781.1| RNA-dependent helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207342060|gb|EDZ69940.1| YMR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270688|gb|EEU05851.1| Has1p [Saccharomyces cerevisiae JAY291]
 gi|259148878|emb|CAY82123.1| Has1p [Saccharomyces cerevisiae EC1118]
 gi|285814296|tpg|DAA10191.1| TPA: Has1p [Saccharomyces cerevisiae S288c]
 gi|323346981|gb|EGA81258.1| Has1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323353213|gb|EGA85513.1| Has1p [Saccharomyces cerevisiae VL3]
          Length = 505

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 196/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF   + +  L  + +F P 
Sbjct: 55  KAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAF--LIPAIELLHSLKFKPR 112

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 113 NGTGIIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLMKGVNMLI 169

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+++DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 170 ATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSA 229

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+  E  N     ++   V+     R   + + L+ +  
Sbjct: 230 TQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQK 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + I TDVA
Sbjct: 290 KKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVA 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 350 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 399


>gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
 gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
          Length = 427

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 24  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 80

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 81  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 137

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 138 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 198 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 258 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 318 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 363


>gi|332998278|gb|EGK17880.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-272]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|327296165|ref|XP_003232777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
 gi|326465088|gb|EGD90541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
          Length = 811

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/373 (31%), Positives = 190/373 (50%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 375 LPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSLP 434

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L+
Sbjct: 435 RLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNLR 494

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 495 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 554

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 555 PDSEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 614

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   V+  D R   +  IL     +   IVF + + +     + +    F  V L 
Sbjct: 615 TVEQRVEFVSGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTLH 674

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 675 GSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 734

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 735 GRAGKSGIAITFL 747


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 186/357 (52%), Gaps = 20/357 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-------- 71
           Y   T VQ++ L   L+ +D++  AQTGSGKT AF   + S +L +    +P        
Sbjct: 267 YTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLDGAPEAPPAYKPGVP 326

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A+ P AL +APTRELA Q+  E       + V   V  GG  V  +  +L  G  I+V 
Sbjct: 327 RAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVA 386

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           T GRL D +    +++S +K +VLDEAD MLD+GF   I  I+        + R+ LMFS
Sbjct: 387 TTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEFDMPGCRDRQTLMFS 446

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA ++  + + + +        +I  R   V   D+++ +++ L   G K+
Sbjct: 447 ATFPKQIQNLAADFLYNYIFLKVGVVGTTQ-NITQRIEYVVEEDKNSYLLDYLS--GLKS 503

Query: 247 ---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+ S    T  L +  F    + G+L+Q ER NALQ  R       +ATD+
Sbjct: 504 DGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDI 563

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
           A+RG+ + ++ LVI+ +L ++    +HR GRTGRAG+KG+++ F   +N    AE L
Sbjct: 564 ASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELL 620


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 274 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 333

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 334 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 393

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++      S +
Sbjct: 394 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKE 453

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 454 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 513

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 514 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 573

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 574 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 621


>gi|320033151|gb|EFW15100.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coccidioides
           posadasii str. Silveira]
          Length = 820

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 193/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 387 LPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 446

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F    +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   L+
Sbjct: 447 RLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLR 506

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 507 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 566

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 567 PDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 626

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   + +IL     +   IVF + + +     + + +  +  V L 
Sbjct: 627 TVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLH 686

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+ D+ LV++  +++N E+  HR GRT
Sbjct: 687 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRIGRT 746

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 747 GRAGKSGVAITFL 759


>gi|198244929|ref|YP_002217852.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226739544|sp|B5FN74|RHLB_SALDC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197939445|gb|ACH76778.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625639|gb|EGE31984.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 185/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           PQV+ EAL ++ + N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVV-EALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPA 76

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  IDDR--KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|254228859|ref|ZP_04922281.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396791|ref|YP_003288644.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938536|gb|EDN57372.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340385|gb|ACY54179.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 416

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 186/345 (53%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++ E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +   ++ ++
Sbjct: 16  IPTLV-ERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQKIVQQD 74

Query: 67  DRFSPASAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
           +        ++ L + PTRELA QV   ++    + +  +      GGVSV+ +   L+ 
Sbjct: 75  ETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRG 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P+K++ L
Sbjct: 135 GCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +TTL+++  +D V V + S   + S +  R   V   ++   + ++++ H 
Sbjct: 195 LFSATFPDKVTTLSQHLLRDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKQHQ 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IATD+
Sbjct: 253 WRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIATDI 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 313 AARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
 gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|68467745|ref|XP_722031.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
 gi|46443978|gb|EAL03256.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
          Length = 569

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 203/361 (56%), Gaps = 16/361 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 113 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 172

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +   +  P +    + I PTRELA+Q   V REL   +++T     + IGG    +E
Sbjct: 173 LLYSL--KIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQT---CGIVIGGADRRQE 227

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P
Sbjct: 228 ATKLAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLP 287

Query: 178 -KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNA 234
            + R+ ++FSAT +  +  LA+ + +   + +N+  E +   +D   +  +V  SD+   
Sbjct: 288 NENRQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFL 347

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++ + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + 
Sbjct: 348 LLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNA 407

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQN 351
           +  + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+ F+ P  
Sbjct: 408 KQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSE 467

Query: 352 M 352
           +
Sbjct: 468 L 468


>gi|303320765|ref|XP_003070377.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110073|gb|EER28232.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 827

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 193/373 (51%), Gaps = 31/373 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 394 LPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 453

Query: 65  ENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D F    +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   L+
Sbjct: 454 RLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLR 513

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 514 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNEK 573

Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               + R+ +M++AT+  A+  +A+ Y +    V I +      
Sbjct: 574 PDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEAVD 633

Query: 218 DIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   ++  D R   + +IL     +   IVF + + +     + + +  +  V L 
Sbjct: 634 TVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVTLH 693

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+ D+ LV++  +++N E+  HR GRT
Sbjct: 694 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRIGRT 753

Query: 336 GRAGRKGMSVFVI 348
           GRAG+ G+++  +
Sbjct: 754 GRAGKSGVAITFL 766


>gi|115480217|ref|NP_001063702.1| Os09g0520700 [Oryza sativa Japonica Group]
 gi|75322251|sp|Q650T9|RH7_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|52076165|dbj|BAD46678.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113631935|dbj|BAF25616.1| Os09g0520700 [Oryza sativa Japonica Group]
          Length = 696

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 194/380 (51%), Gaps = 16/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L  +G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 122 ISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGT 181

Query: 67  DRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + S  +     P  L + PTRELA QV  +  +  A  G+      GG     +   ++
Sbjct: 182 HKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIR 241

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  IVVGTPGR+ D +    LN   LK  VLDEADEML++GF DD+E IL       K 
Sbjct: 242 KGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKV 301

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYR--AVLVALSDRDNAIVN 237
           + L+FSATI   +  L+  + K   + V++  + +  +    R  A+    + R   I +
Sbjct: 302 QTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPD 361

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R Y      I+F  T+ S S  + ++A       AL G+++Q +R   L   R G+  
Sbjct: 362 IIRCYSRGGRTIIFTETKESASDLSGLIAGSR----ALHGDVAQAQREVILAGFRSGKFL 417

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V +     +   
Sbjct: 418 VLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNV 477

Query: 357 ERLFREANVSV--VWEPAPS 374
            R+ RE+ V    +  P P+
Sbjct: 478 NRIERESGVKFEHISAPQPT 497


>gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301]
 gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073]
 gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T]
 gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046]
 gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89]
 gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1]
 gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739]
 gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11]
 gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1]
 gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88]
 gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a]
 gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989]
 gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606]
 gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9]
 gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B]
 gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332282712|ref|ZP_08395125.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073]
 gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1]
 gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11]
 gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82]
 gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA
           degradosome and degradosome [Escherichia coli BL21(DE3)]
 gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15]
 gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri
           2002017]
 gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034]
 gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146]
 gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T]
 gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1]
 gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431]
 gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327]
 gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B]
 gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010]
 gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68]
 gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357]
 gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1]
 gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86]
 gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|332345760|gb|AEE59094.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMNK88]
 gi|332751084|gb|EGJ81488.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-671]
 gi|332996857|gb|EGK16477.1| ATP-dependent RNA helicase rhlB [Shigella flexneri VA-6]
 gi|333013582|gb|EGK32949.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-304]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|317123400|ref|YP_004097512.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315587488|gb|ADU46785.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 528

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 184/361 (50%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL++ G    T +Q A L   L  +DVL   +TGSGKT AF L + + L A 
Sbjct: 14  GVPSALTAALADLGITTPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPIVARLAAA 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R SP   P AL +APTRELA Q+   L  L A  G+      GGV  + + + L+ G 
Sbjct: 74  PTRRSPGR-PRALILAPTRELATQIDTALAPLAATAGLNSLTIFGGVGQNPQVQGLRRGV 132

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV  PGRL D + G+G +++  ++  VLDEAD M DLGF   +  I+D +P   + ++
Sbjct: 133 DVVVACPGRLED-LMGQGHVSLDSVEITVLDEADHMADLGFLPGVRRIMDKTPATGQRML 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  + K +     R + A   +         VL   SD   A++  L     
Sbjct: 192 FSATLDGAINVIVKRFLTSP-RTHEADSAQSPVSTMAHHVLHVTSDAHLAVILDLAAAPG 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+    +  K L       V L G LSQ  R+  +     GRA+  +ATD+A
Sbjct: 251 RK-VVFTRTKHRAKKLAKQLNSSGVPAVELHGNLSQGARTRNMDDFHSGRAQTLVATDIA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++  +  R    L R+A 
Sbjct: 310 ARGIHVDDVALVIHADPPVEHKAYLHRSGRTARAGADGTVVTMMLDDQVRDVRDLTRKAG 369

Query: 365 V 365
           +
Sbjct: 370 I 370


>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 186/354 (52%), Gaps = 7/354 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +   ++         AL
Sbjct: 38  GYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQ------AL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+   ++ + +   V    CIGG  +  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  VLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQGQHVVVGTPGRVIDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  S++K  VLDEAD+ML  GF   I+ I    P+  ++++ SAT+   + T+A+
Sbjct: 152 MNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIAR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
              +D V++ I  E      I    + V+  + +   ++++ +       ++F ++    
Sbjct: 212 GIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKA 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           S  ++ LA   FQV  ++ ++ Q++R   ++  R GR+R+ ++TDV ARGID+  + LV+
Sbjct: 272 SYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLSTDVLARGIDVQQVSLVV 331

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           + +L  + E  +HR  R GR GRKG ++  I    +     L    N  ++  P
Sbjct: 332 NYDLPGDRETYIHRICRGGRFGRKGTAINFITDTEKEALRDLQTYYNTEILEMP 385


>gi|124487920|gb|ABN12043.1| putative eukaryotic translation initiation factor 4A
           [Maconellicoccus hirsutus]
          Length = 372

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 178/329 (54%), Gaps = 10/329 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++       
Sbjct: 51  NLKQELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQ----- 105

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQN 123
             +  P+ +   AL +APTRELA Q  + +  L           CIGG ++  + R L+ 
Sbjct: 106 --QIDPSLNECQALILAPTRELAQQTQKVVLALGDFMENCKCHACIGGTNIREDMRRLEE 163

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ D I  K L I H+K  VLDEADEML  GF++ I  +    P+  +++
Sbjct: 164 GAQVVVGTPGRVYDMIIRKSLKIDHIKVFVLDEADEMLSRGFKEQIHQVFQHLPQDVQVI 223

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYH 242
           + SAT+   +  ++K + ++ V++ +  E      I    V V   + + + + ++    
Sbjct: 224 LLSATMPQDVLEVSKQFMRNPVQILVKKEELTLEGIKQFYVFVEKEEWKLDTLCDLYDTL 283

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC+TR  V   T  + ++   V ++ G++ Q+ER   ++  R G +RV I TD
Sbjct: 284 SITQAVIFCNTRRKVDWLTDKMTKNDHTVSSMHGDMDQKEREKIMKHFRTGSSRVLITTD 343

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHR 331
           + ARGID+  + LVI+ +L SN EN +HR
Sbjct: 344 LLARGIDVQQVSLVINYDLPSNRENYIHR 372


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 179/333 (53%), Gaps = 12/333 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  +L  +           AL
Sbjct: 46  GFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQ------VRETQAL 99

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H+V GTPGR+ D 
Sbjct: 100 ILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQHVVSGTPGRVFDM 159

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ +  I    P   ++++ SAT+   I  +  
Sbjct: 160 IRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTS 219

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  D +R+ +  +      I  +   VA+   +     ++  +    +  F      V 
Sbjct: 220 KFMTDPIRILVKRDELTLEGI--KQFFVAVDREEWKFDTLIDLYDTLTSSSFL----KVD 273

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T  + E  F V ++ G++ Q++R   ++  R G  RV I+TDV ARG+D+P + LVI+
Sbjct: 274 WLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLISTDVWARGLDVPQVSLVIN 333

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +L +N E  +HR GR+GR GRKG+++  + Q+
Sbjct: 334 YDLPNNRELYIHRIGRSGRFGRKGVAINFVKQD 366


>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
 gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
          Length = 457

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 184/391 (47%), Gaps = 39/391 (9%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLAENDRFSP---- 71
           G+   T +Q A +   L  KDV+ SAQTG+GKT AF    L +  T   +     P    
Sbjct: 22  GFNTPTPIQAAAIPAVLAGKDVVASAQTGTGKTAAFVFPALQVIDTGFGDEKTDRPEVQC 81

Query: 72  -----------------------------ASAPLALAIAPTRELAVQVGRELEWLYAKTG 102
                                           P AL + PTRELA Q+ R    +   TG
Sbjct: 82  QPQDGQQQSSQQQESQRRRQRGGKRRRNRTRDPQALIVTPTRELATQIERVATTICKSTG 141

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
               +  GG  + R+   +Q G  ++V TPGRL D I    +N+ ++K  +LDEAD MLD
Sbjct: 142 QRAVIITGGAKLKRQISAVQAGCDLLVATPGRLLDLIEHHQVNLKNIKVFILDEADRMLD 201

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF   +  I+D+ P KR+ L+FSAT+ P+I +   N   D   + IA   +    ++  
Sbjct: 202 MGFWPSVRRIMDTLPPKRQTLLFSATLPPSIISTIDNMLHDPTMIEIARTGQTADTVEEH 261

Query: 223 AVLVALSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              V    +   + +++R      +  +VFC T+  V      L    F+V  +  +  Q
Sbjct: 262 LCPVVQGQKVELLESLIRSFRPAPERILVFCRTKLRVDSVYAALNNAGFKVDVMHADRPQ 321

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R+ AL   R+G  ++ +ATDV +RGID+  ++ V++ ++  +PE+ +HR GRTGRAG 
Sbjct: 322 GARTRALTKFRNGTIQILVATDVMSRGIDVQGIDAVVNFDVPLDPEDYVHRIGRTGRAGS 381

Query: 341 KGMS-VFVIPQNMQRRAERLFREANVSVVWE 370
            G +  F+ P  +    E  +   ++   W+
Sbjct: 382 AGQAFTFMAPDEIAPLREIEYFTKSLISTWD 412


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 185/357 (51%), Gaps = 6/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +   ++ + 
Sbjct: 238 FPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQ 296

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ +  APTRELA Q+  E +       + VA   GGVS   + ++L+ G  
Sbjct: 297 PELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE 356

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FS
Sbjct: 357 IVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 416

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+   +  LA+    D +RV +      + DI  + V V LSD +     + +  G   
Sbjct: 417 ATMPYKVERLAREILTDPIRVTVGQVGSANEDIK-QVVNVLLSDAEKMPWLLEKLPGMID 475

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   V +ATDV
Sbjct: 476 DGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDV 535

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
           AARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R A  L
Sbjct: 536 AARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGEL 592


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 176/344 (51%), Gaps = 11/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRF 69
           E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  N     F
Sbjct: 269 ENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDNNCPSHAF 328

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              + P  L I PTRELA+Q+ RE       +     V  GG +   + + + NG HI+V
Sbjct: 329 EEPAQPTGLVICPTRELAIQIMREARKFSHGSVAKCCVAYGGAAGFHQLKTMHNGCHILV 388

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKKRRM-LMF 185
            TPGRL D +    +  S+LK +VLDEAD MLD+GF   I+ +++    +P + R+ LMF
Sbjct: 389 ATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIKTVINHITMTPTEERITLMF 448

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILRY 241
           SAT    I  LA  +  + + V + S    ++D+    + V+  D+   +V     IL  
Sbjct: 449 SATFPNEIQELASVFLNNYLFVVVGSVGAANTDVKQEVLSVSKFDKKAKLVEMCEEILIN 508

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF   +         L E  F+   + G+  Q +R  AL   R G   + +AT
Sbjct: 509 SEDEKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGVHNILVAT 568

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            VAARG+D+  + +V++ +L    +  +HR GRTGR G +GMS+
Sbjct: 569 AVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGMSI 612


>gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026]
 gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|643070|gb|AAA80219.1| ribosomal DEAD box protein [Leishmania braziliensis]
          Length = 403

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 188/357 (52%), Gaps = 14/357 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L + +       +GG  V  +
Sbjct: 88  LDFRHNLIQ------GLVLSPTRELALQTAEVISRIGEFL-SNSAKFCETFVGGTRVQDD 140

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G  + VGTPGR+ D I+   L    L+ +VLDEADEML  GF D I  I    P
Sbjct: 141 LRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP 200

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++ +FSAT+   +  L K + +D VR+ +  E+     I    + V    + + +++
Sbjct: 201 KDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V ++  E+ + +R   +   R G +RV
Sbjct: 261 LYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            + TD+ ARGID+  + +VI+ +L +N EN LHR GR GR G KG+++ FV  ++++
Sbjct: 321 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVE 377


>gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
 gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
          Length = 421

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 195/364 (53%), Gaps = 7/364 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      A 
Sbjct: 354 ALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VGEAE 412

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            PLA+ + PTRELA+Q+ +E +  ++K+  +  VC+ GG  +  +  +L+ GA I+V TP
Sbjct: 413 GPLAVIMTPTRELALQITKECK-KFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTP 471

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VV+DEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 472 GRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 531

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-I 248
              +  LA+      V V +   +   SD++   +++    +   ++ IL ++  K + I
Sbjct: 532 PRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVI 591

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +       K L +  +  ++L G + Q +R + +   ++G  R+ +AT VAARG+
Sbjct: 592 IFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGL 651

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I +   R +  + +   +S  
Sbjct: 652 DVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGS 711

Query: 369 WEPA 372
             PA
Sbjct: 712 SVPA 715


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 186/347 (53%), Gaps = 8/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL +  +   T VQE  +   L ++DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   NLNNNVLDALYDMHFDTCTPVQERCIPEILNKRDVLGVAQTGTGKTAAYLLPILSML--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQN- 123
           +D   P  A   + ++PTRELA Q+ + ++   Y  +GV      GG   +R  ++L++ 
Sbjct: 64  DDGGYPKDAINCIIMSPTRELAQQIDQAMQGFGYYLSGVSSVAVYGGNDGNRYDQELKSL 123

Query: 124 --GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA +V+ TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P   +
Sbjct: 124 RLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQLPPTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LA    K+ V + +A  ++    I   A +   + + + I NI   
Sbjct: 184 TIMFSATMPDKIEELANTLLKNPVTIKLAV-SKPAEKIRQSAYVCYETQKMDIIKNIFNA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  ++  V + TK L +       +  +L Q +R + +   + G+  V +AT
Sbjct: 243 GDLKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQLDVIVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I
Sbjct: 303 DIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLI 349


>gi|228965117|ref|ZP_04126213.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794550|gb|EEM42060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 389

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 8/353 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I +     S +++  ++    ++++ +  I+ + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRI-TRAESKSLVEHTYIICERREKNDYVRRIM-HM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 185/363 (50%), Gaps = 19/363 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----------- 72
           T VQ+  +   +  +D++  AQTGSGKT  F   +      +     PA           
Sbjct: 218 TPVQKYSIPIVIGGRDLMACAQTGSGKTGGFLFPILHQSFVQGPSPIPAQGGGGGGYRQR 277

Query: 73  -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            + P AL +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V T
Sbjct: 278 KAYPTALILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVAT 337

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRMLMFSA 187
           PGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+         +R+ LMFSA
Sbjct: 338 PGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVQGEDMPLTGQRQTLMFSA 397

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA+++  D V +++        +I  +   V   D+ + +++IL  H     
Sbjct: 398 TFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLT 457

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+      +  L    F   ++ G+ +Q+ER  AL++ R+G+  + +AT VAARG
Sbjct: 458 LIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALELFRNGKCPILVATAVAARG 517

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREAN 364
           +D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     +  +   R    L +EAN
Sbjct: 518 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEAN 577

Query: 365 VSV 367
             V
Sbjct: 578 QEV 580


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAIQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 185/345 (53%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   + +A    + +D   +A  V   ++   I+ N+      +  I
Sbjct: 191 PAKIQQLANTILNNPSEIKLAVS--RPADKIIQAAYVCYENQKLGIIRNLFMDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQ 353


>gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum]
          Length = 515

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 186/375 (49%), Gaps = 30/375 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLL 63
           +P  + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    ++L 
Sbjct: 92  LPSEVLDVIIKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITSLP 151

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                    S P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 152 KIQSNEDQDSGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQGLKLRL 211

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L++     V+LDEAD MLD+GF  +++ +L+  P      
Sbjct: 212 GVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIPVTNLKP 271

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+SPAI  LA+ Y +    V I S  R    
Sbjct: 272 DTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSVGRPTER 331

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           ++    ++    +   +V +L     +   I+F + +       K L +  F    L G 
Sbjct: 332 VEQIVYMIGEERKRKKLVELLSSEAFEPPIIIFVNQKKGADMLAKGLTKLGFAPCVLHGG 391

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q  R  +L  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGR
Sbjct: 392 KGQDAREYSLAALKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTGR 451

Query: 338 AGRKGMSV-FVIPQN 351
           AG+ G ++ F+ P++
Sbjct: 452 AGKHGKAITFLTPED 466


>gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum]
 gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum]
          Length = 441

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 186/339 (54%), Gaps = 9/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +   LL +        
Sbjct: 42  ACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQRLLDDQ------- 94

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   L    HI+V +P
Sbjct: 95  VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKPHIIVASP 154

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG NI  +K +V+DEAD +L + F   +  I++SSP+ R   +FSAT++ 
Sbjct: 155 GRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTYLFSATMTT 214

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L K    + +++ + ++    +++    + +    + +  + +L+  G    I+FC
Sbjct: 215 KVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLGQYTGIIFC 274

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+   T+V +RG+D+P
Sbjct: 275 NTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLFTTEVGSRGLDIP 334

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 335 HVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQ 373


>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax SaI-1]
 gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
          Length = 720

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 200/407 (49%), Gaps = 32/407 (7%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P++   I + LS +G   +T +Q     P    +D++  ++TGSGKT+AF L L  
Sbjct: 127 FADVPEINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 186

Query: 61  TLLA-----ENDRFSPASA-------------------PLALAIAPTRELAVQVGRELEW 96
            L         +  SP++                    P  L + PTREL+ QV    + 
Sbjct: 187 KLYKVKMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKE 246

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +       +    GG S   +   L+ G  I+ GTPGR+ DH+  K L++ ++K +VLDE
Sbjct: 247 ISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDE 306

Query: 157 ADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENR 214
           ADEML+LGF  D+E IL   + K+ ++L++SAT    I  ++  Y K+   +++  S N+
Sbjct: 307 ADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVVDSSNK 366

Query: 215 QHSDIDYRAVLVALSDRDNAIV---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
              +I + A+      ++ A++    IL        I+F  T+          +      
Sbjct: 367 TSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSF 426

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
             L G ++Q  R + +Q  R G  ++ IATD+AARG+D+ +++LVI     +  E  +HR
Sbjct: 427 AVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHR 486

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           +GRTGRA +KG+SV +     ++   ++ +   +    E  P+ E +
Sbjct: 487 AGRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNEDV 533


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 180/352 (51%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 182 KFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 241

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  FS    P  L I P+RELA Q    +E+ Y +         +  A+CIGG+SV  
Sbjct: 242 EKRLPFSKREGPYGLIICPSRELARQTHGIIEY-YCRLLQEDSLPPLRCALCIGGMSVKE 300

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I    
Sbjct: 301 QMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF 360

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++
Sbjct: 361 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL 420

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  RDG+  
Sbjct: 421 ECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKD 479

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 480 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 531


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 294 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 353

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 354 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 413

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 414 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 473

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 474 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 533

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 534 ILRNIGDERTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 593

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 594 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641


>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
 gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
          Length = 444

 Score =  179 bits (454), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNSYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
 gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
          Length = 741

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 180/352 (51%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 121 NVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLL-- 178

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L I PTRELAVQ+   +E L   T +   + +GG+S   +   L+ 
Sbjct: 179 ---FRPRRIPAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRT 235

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R  + + +  L  +VLDEAD +L+LGFR++I  ++   P +R+ 
Sbjct: 236 HPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQT 295

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNIL 239
           ++FSAT++  ++ L K   K  VR++      + S +    + +      D++  ++++ 
Sbjct: 296 MLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLC 355

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+    R   +      +   L G L+Q +R  AL+  R       I
Sbjct: 356 SRSLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLI 415

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ATDVAARG+D+  +E VI+ E     +  +HR GRT RAGR G SV ++ + 
Sbjct: 416 ATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQ 467


>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 803

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/337 (33%), Positives = 182/337 (54%), Gaps = 14/337 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+ + G+   T +Q   + P  +       A TGSGKT AF L +   LL    R  
Sbjct: 192 LQKAVQKLGFTMPTPIQAKTIPPSTQ------CATTGSGKTAAFLLPILERLLY---RDV 242

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   L + PTRELA+Q    LE L   T +   + +GG+S   +  +L+    +V+ 
Sbjct: 243 DNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLVVGGLSNKVQEVELRKRPDVVIA 302

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+     + +  L+ +VLDEAD +LD+GF+D++E I++S P  R+ L+FSAT+
Sbjct: 303 TPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKDELEKIVESCPANRQSLLFSATL 362

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNIL-RYHGAK 245
           S  + TLAK   K  +RV + +  +  S ++   V +    L DR   ++++  R     
Sbjct: 363 SDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIRPTQLGDRPALLLSLASRVFNTG 422

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  ++  V R   +          L G+LSQ++R  +LQ+ RDG+ +  +A+DVAA
Sbjct: 423 GTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQRFESLQLFRDGKVQFLLASDVAA 482

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           RG+D+  ++ VI+  +  N    +HR GRT RAG +G
Sbjct: 483 RGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQG 519


>gi|182439289|ref|YP_001827008.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467805|dbj|BAG22325.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 537

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 186/361 (51%), Gaps = 4/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L   
Sbjct: 82  DMPPGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LART 138

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     APLA+ + PTRELA QV   L        + +A  +GG+S+ ++   L+ GA
Sbjct: 139 AGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       + ++F
Sbjct: 199 EVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRMLF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K +  D V  ++       + +++  VL  L + D   V         
Sbjct: 259 SATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHH-VLHVLDETDKKAVATKIAAREG 317

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +AT+VAA
Sbjct: 318 RVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAA 377

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL ++A +
Sbjct: 378 RGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMQDAGI 437

Query: 366 S 366
           +
Sbjct: 438 A 438


>gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain,
           putative cold-shock protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 420

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 180/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A    LL
Sbjct: 9   FAIAPEVVA-GLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHRLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R  L+ 
Sbjct: 68  QSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++    P   KR 
Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPDTSKRL 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++ ++  
Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AI+F +T+ S       L     +V  L+G+++Q++R + L     G     +AT
Sbjct: 246 EWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLDFLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P++  V + +L  + E+ +HR GRT RAG  G ++
Sbjct: 306 DVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAI 349


>gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
 gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
          Length = 421

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPGRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
 gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
          Length = 440

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L +   LL    + S   
Sbjct: 18  ALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L A T + +A   GGV+             +VV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQDVVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTLLFSATLEGEA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   K+ V V      R+   I    YRA  V    +   +V++L+    + +++
Sbjct: 196 IREFAERILKEPVEVEADPSRRERKKILQWYYRADDV--KHKTALLVHLLQQPDVQKSVI 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDVAARG+D
Sbjct: 254 FVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  V + ++    +  LHR GRTGRAGRKG ++ ++
Sbjct: 314 ILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLV 352


>gi|228900742|ref|ZP_04064960.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
 gi|228858926|gb|EEN03368.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
          Length = 389

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 190/353 (53%), Gaps = 8/353 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I +     S +++  ++    ++++ +  I+ + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRI-TRAESKSLVEHTYIICERREKNDYVRRIM-HM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 184/346 (53%), Gaps = 9/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +V+ E L +  Y   T +Q+  +   +  +D++ +AQTGSGKT AF L +  TLL++   
Sbjct: 170 EVLIEKLVKCNYTTPTPIQKYCIPVIISGRDMMATAQTGSGKTAAFVLPIVHTLLSQPQD 229

Query: 69  F---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+   +  L   T +  ++  GG +   +R  L NG 
Sbjct: 230 LVFDRDYCEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQRGTLANGI 289

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRR 181
           HI+V TPGRL D +    ++ + L+  VLDEAD MLD+GF+ DIE IL+         R+
Sbjct: 290 HILVATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETMVDVNTRQ 349

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            L+FSAT++  I  L+K Y K + V V +        D+      V   ++   ++ +L 
Sbjct: 350 TLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREVTKFEKKKELIKVLE 409

Query: 241 YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             G  K  +VF   + +       L+E  +   ++ G+  Q ER  AL+  ++ R ++ +
Sbjct: 410 SLGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDFKNNRMKILV 469

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AT VAARG+D+  +  VI+ ++ S+ +  +HR GRTGR G  G +V
Sbjct: 470 ATAVAARGLDIKGVNCVINFDMPSSIDEYVHRIGRTGRLGNSGRAV 515


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 185/341 (54%), Gaps = 15/341 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLALAIAPTRELAVQVGRELEW 96
           +D++  A+TGSGKT++FGL + + +L++ +  S     PL L +APTRELA+Q     E 
Sbjct: 405 RDIIAIAETGSGKTLSFGLPILAQILSKQNSTSGGKRTPLMLVLAPTRELAMQTADVCEA 464

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             A  G+      GG       + L+ G  +++ TPGRL D ++     +  ++ +VLDE
Sbjct: 465 AGATCGLKTLCVYGGSPREGNVKALKAGVDLLIATPGRLIDLLQEGVAVLDKVQHLVLDE 524

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF   I  I+ + PK R+ LMFSAT   +I +LA  + ++  +V I  +  Q 
Sbjct: 525 ADRMLDMGFEPAIRQIIAAVPKTRQTLMFSATWPLSIQSLANEFLREPAKVTIGVKQEQ- 583

Query: 217 SD-------IDYRAVLVALSDRDNAIVNILR--YHGAKNAI-VFCSTRASVSRFTKVLAE 266
           SD       +     ++   D+++ + ++L   +   KN I VF   +    R  + L  
Sbjct: 584 SDGPTANRRVTQIVEVMTYRDKEHRLQDLLHKLHKSRKNRILVFALYKKEAERIEQTLRR 643

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             ++V  + G+ SQ  RS A++  R G   + +ATDVAARG+D+PD+E VI+       E
Sbjct: 644 KGWKVQGIHGDKSQALRSKAIESFRSGEEPLLVATDVAARGLDIPDVEYVINYTFPLTIE 703

Query: 327 NLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           + +HR GRTGRAG+ G +  F   ++     E  ++ REAN
Sbjct: 704 DYVHRIGRTGRAGKTGTAYTFFTDEDKTHAGELQQVLREAN 744


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 175/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  +Q+G+GKT  F +A+   L       S  +    L
Sbjct: 41  GFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQVLE------SATNETQML 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA Q  +    L     V    CIGG S+  + R L  G  IV GTPGR+ D 
Sbjct: 95  TISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYGVQIVSGTPGRVFDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   +LK +V+DEADEML+ GF++ I  I    P   ++++ SAT+   +  + +
Sbjct: 155 IKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTR 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VRV +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 215 KFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 + E  F V A+ G++ Q+ER   +   R G +RV IATD+  RG+D+  + LVI
Sbjct: 275 DWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +L +N E  +HR GR+GR GRKG+++
Sbjct: 335 CYDLPNNRELYIHRIGRSGRFGRKGVAI 362


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 8/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  + + T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKL---DDGGYPK 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
            A   + ++PTRELA Q+ + ++   Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  DAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLRLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   VLDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPNTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYETQKLGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC ++  V +    L         +  +L Q ER + +   + G+  V +ATD+ ARGI
Sbjct: 250 IFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSED 352


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 188/360 (52%), Gaps = 11/360 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            P  I   LS++G+ + T +Q AI  P+ +   D +  A+TGSGKT+AF L     + A+
Sbjct: 154 FPDYIYGTLSKQGFSDPTPIQ-AIGWPNAMSGHDCVGIAKTGSGKTLAFILPAIVHINAQ 212

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                P   P+ L + PTRELA QV +++   +  +  +   C+ GG S   + RDL+ G
Sbjct: 213 -PYLDPGDGPIVLVLCPTRELAQQV-QQVAAEFGSSSHIKNTCVYGGASKGPQLRDLERG 270

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  K  N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 271 CEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLM 330

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           +SAT    ++ LA ++  D V V + S   +  H+ +    V   + ++D  ++ ++   
Sbjct: 331 WSATWPKEVSKLAADFLGDFVHVQVGSTGLSANHNILQIVDVCQPM-EKDEKLMRLMEEI 389

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+      T+ +    +  + + G+ SQ ER   L   R GR+ + +
Sbjct: 390 MGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILV 449

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ D++ VI+ +  S  E+ +HR GRT RA +KG +      +  ++A+ L
Sbjct: 450 ATDVASRGLDVSDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAKDL 509


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 181/345 (52%), Gaps = 4/345 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +       P+ L 
Sbjct: 274 YTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRE-LKAGDGPIGLI 332

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+ +E +       + V  C GG S   + + L++GA IVV TPGR+ D +
Sbjct: 333 LAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATPGRMIDLV 392

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    +  LA++
Sbjct: 393 KMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVEKLARD 452

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDNAIV-NILRYHGAKNAIVFCSTRAS 256
              D +R+        ++D+    ++     S + N ++ N++ +  A + ++F + + +
Sbjct: 453 ILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLVEFLSAGSLLIFVTKKLN 512

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L    F V+ L G++ Q ER+  +   +       +ATDVAARG+D+P ++ V
Sbjct: 513 AEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVSTLVATDVAARGLDIPHIKTV 572

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R
Sbjct: 573 VNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKDKEFAGHLVR 617


>gi|326779941|ref|ZP_08239206.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660274|gb|EGE45120.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 537

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 186/361 (51%), Gaps = 4/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   L   
Sbjct: 82  DMPAGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL---LART 138

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     APLA+ + PTRELA QV   L        + +A  +GG+S+ ++   L+ GA
Sbjct: 139 AGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATLRRGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       + ++F
Sbjct: 199 EVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQRMLF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K +  D V  ++       + +++  VL  L + D   V         
Sbjct: 259 SATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHH-VLHVLDETDKKAVATKIAAREG 317

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +AT+VAA
Sbjct: 318 RVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVATNVAA 377

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL ++A +
Sbjct: 378 RGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMQDAGI 437

Query: 366 S 366
           +
Sbjct: 438 A 438


>gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 422

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/346 (34%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVI-EALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVNQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|221481559|gb|EEE19941.1| DEAD-box helicase family protein [Toxoplasma gondii GT1]
          Length = 1158

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 183/368 (49%), Gaps = 27/368 (7%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 744  LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 803

Query: 65   ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 804  PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 863

Query: 125  AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
            A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 864  AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 923

Query: 180  -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                               R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 924  DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 983

Query: 221  YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             R   V  + +   + ++L  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 984  QRVEFVPEARKKQRLQDVLE-NATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 1042

Query: 281  QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 1043 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 1102

Query: 341  KGMSVFVI 348
            KG+++  +
Sbjct: 1103 KGLAISFL 1110


>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 698

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 210/362 (58%), Gaps = 19/362 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   +A++E  +  +T +Q   + P L  +D+L +A+TGSGKT+AF +     
Sbjct: 196 FNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAIEI 255

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHR-E 117
           L+  N  F P +    + I+PTRELA+Q   V REL   + +T  +V   IGG +  R E
Sbjct: 256 LVKAN--FKPRNGTGVIIISPTRELALQIYGVARELMLNHTQTHGLV---IGGNNDKRAE 310

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L+ G +++V TPGRL DH++  +G  + +LK +V+DEAD +L++GF +D+  I+   
Sbjct: 311 IERLEKGVNLLVCTPGRLLDHLQNTRGFIVKNLKCLVIDEADRILEVGFEEDMHQIVKLL 370

Query: 177 PKKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDN 233
           PK+R+ ++FSAT +  +  +A+ ++ K+ V V +  ++R+ S ++   +  +V  S++  
Sbjct: 371 PKERQTMLFSATQTRKVDDIARVSFNKEPVYVGV-DDDREVSTVEGLEQGYVVCPSEKRF 429

Query: 234 AIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            ++   L+ +  K  IVF S+  SV    ++L      V+   G+  QQ+R+N      +
Sbjct: 430 LLLYTFLKKNLNKKVIVFLSSCNSVKYHAELLNFIGIPVLEFHGKQKQQKRTNTFYEFVN 489

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQ 350
               + I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG + +F++PQ
Sbjct: 490 AEKGILICTDVAARGVDIPSVDWIIQFDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPQ 549

Query: 351 NM 352
            +
Sbjct: 550 EL 551


>gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401]
 gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
          Length = 421

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 185/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 181/340 (53%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GY   T VQ+  +      +D++  AQTGSGKT AF L +   L+ +     +FS 
Sbjct: 226 ISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPILQQLMVDGVAASQFSE 285

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  + +APTREL  Q+  E       T V   V  GG+S     R++  G +++  T
Sbjct: 286 IQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTIREILKGCNVLCAT 345

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLMFS 186
           PGRL D I RGK + +S L+ +VLDEAD MLD+GF   +  ++ S   P K  R+ LMFS
Sbjct: 346 PGRLMDIIGRGK-IGLSKLRYLVLDEADRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFS 404

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ +KD + + +       SD++   V V    + + ++ +L+  G++
Sbjct: 405 ATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSE 464

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L        ++ G+  Q+ER  AL   R GR  V +AT VAA
Sbjct: 465 RTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSGRCPVLVATSVAA 524

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+ D++ +++ +L +N +  +HR GRTGR G  G +V
Sbjct: 525 RGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAV 564


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 180/352 (51%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 169 KFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 228

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  FS    P  L I P+RELA Q    +E+ Y +         +  A+CIGG+SV  
Sbjct: 229 EKRLPFSKREGPYGLIICPSRELARQTHGIIEY-YCRLLQEDSLPPLRCALCIGGMSVKE 287

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I    
Sbjct: 288 QMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF 347

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++
Sbjct: 348 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL 407

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  RDG+  
Sbjct: 408 ECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKD 466

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 467 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 518


>gi|322712774|gb|EFZ04347.1| ATP-dependent RNA helicase HAS1 [Metarhizium anisopliae ARSEF 23]
          Length = 581

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 190/350 (54%), Gaps = 17/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T++Q   + P L  KDVL +A+TGSGKT+AF +     L A   RF P 
Sbjct: 117 KAITEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEILSAL--RFKPR 174

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 175 NGTGVIVVSPTRELALQIFGVARELMQHHSQT---YGIVIGGANRKAEAEKLSKGVNLLI 231

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
            TPGRL DH+        +LK++V+DEAD +L++GF D+I  I+   S   R+ ++FSAT
Sbjct: 232 ATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDDRQTMLFSAT 291

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----H 242
            +  +  LA+ + +   + +N+  E +Q S +D       L D D   + +  +      
Sbjct: 292 QTTKVEDLARISLRPGPLYINV-DEEKQFSTVDGLEQGYVLCDADKRFILLFSFLMRMKE 350

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +    + I TD
Sbjct: 351 KKKKVIVFFSSCNSVKYYSELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAEHGILICTD 410

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQN 351
           VAARG+D+P ++ ++  +   N  + +HR GRT R A  KG S+  +  N
Sbjct: 411 VAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPN 460


>gi|19387221|gb|AAL87141.1|AF479822_1 DEAD box RNA helicase Vasa [Oryzias latipes]
          Length = 396

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 177/314 (56%), Gaps = 10/314 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+A+     RFS    P A+ +APTREL  Q+ +E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQQLMADGVAASRFSGIQEPEAVIVAPTRELINQIYQEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GGV+   + R+++ G +++ GT GR+ D I RGK + +S ++ +VLDE
Sbjct: 61  SFGTCVRPVVVYGGVNTGYQMREIEKGCNVLCGTTGRMLDLIGRGK-VGLSKVRHLVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS 211
           AD MLD+GF  D+  ++ S    S ++R+ LMFSAT    I  LA ++ K D + V +  
Sbjct: 120 ADRMLDMGFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGV 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                +D++   + V   ++   ++++LR  G++  +VF  T+         L +     
Sbjct: 180 VGGAVTDVEQTFLQVTKFNKREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPT 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R G+  V +AT VA+RG+D+PD++ V++ +L +  ++ +HR
Sbjct: 240 TSIHGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHR 299

Query: 332 SGRTGRAGRKGMSV 345
            GRTGR G  G +V
Sbjct: 300 IGRTGRCGNTGRAV 313


>gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
          Length = 446

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 186/339 (54%), Gaps = 9/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +   LL +        
Sbjct: 47  ACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQRLLDDQ------- 99

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            P+ A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   L    HI+V +P
Sbjct: 100 VPMYAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLSLAKKPHIIVASP 159

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG NI  +K +V+DEAD +L + F   +  I++SSP+ R   +FSAT++ 
Sbjct: 160 GRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRNRTTYLFSATMTT 219

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L K    + +++ + ++    +++    + +    + +  + +L+  G    I+FC
Sbjct: 220 KVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGMLQNLGQYTGIIFC 279

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+   T+V +RG+D+P
Sbjct: 280 NTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLFTTEVGSRGLDIP 339

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 340 HVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQ 378


>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 860

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 185/345 (53%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ GY   T +Q   +   L  KD+L SA TGSGKT AF L +   LL    R +
Sbjct: 245 LQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILERLLY---RDA 301

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q     E L   T V   + +GG+S   +  +L+    +++ 
Sbjct: 302 THRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKRPDVIIA 361

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+     + +  ++ +VLDEAD +LD+GF+D++  +++S P  R+ L+FSAT+
Sbjct: 362 TPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTLLFSATL 421

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNIL-RYHGAK 245
           S  +  LAK      VRV + +  +  S ++   + +    L+DR   ++++  R     
Sbjct: 422 SDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCTRVFNGG 481

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  ++  V R   +L     +V  L G+L+Q++R  ALQ  R+G     +ATD+AA
Sbjct: 482 GCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLLATDIAA 541

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+  +  VI+  +  +    +HR GRT RAG  G S   I +
Sbjct: 542 RGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITE 586


>gi|302520727|ref|ZP_07273069.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302429622|gb|EFL01438.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 518

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L   
Sbjct: 87  GLPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASLAGG 146

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G 
Sbjct: 147 ---FTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGV 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 204 DILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLF 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  D +   + +     + + +  ++V   D+      I    G  
Sbjct: 264 SATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKG-- 321

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 322 RTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAA 381

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 382 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 441


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 190/367 (51%), Gaps = 8/367 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++ Y   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 218 IKNFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 278 IVHIM-DQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +V+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 337 KELKAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 397 GRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIK-QVVNVIPSDAEKMPWLL 455

Query: 239 LRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF S +A V    + L +  F++ AL G+  Q  R   LQ  + G  
Sbjct: 456 EKLPGMIDDGDVLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTY 515

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R
Sbjct: 516 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575

Query: 355 RAERLFR 361
            A  L +
Sbjct: 576 FAGELVQ 582


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/395 (31%), Positives = 203/395 (51%), Gaps = 19/395 (4%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + FE  P ++ E + + G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 270 QCFEKYPDLLAEVMKQ-GFSKPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 328

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
              ++        P  L +APTRELA+Q+  E++    +   + AVC+ GG     +  D
Sbjct: 329 TEYQSVPRGQRGGPNVLVLAPTRELALQIEMEVKKYSFRN--MRAVCVYGGGDRRMQISD 386

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ GA I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      R
Sbjct: 387 VERGAEIIICTPGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDR 446

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI 238
           + +M SAT  P +  LA++Y K+ ++V + S +    HS    + V+  L D       I
Sbjct: 447 QTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHS---VKQVIELLQDDAEKFQTI 503

Query: 239 LRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             +          IVFC  +A     +  L    F    + G   Q +R  A+  ++ G 
Sbjct: 504 KSFVKNMRKTDKIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGA 563

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN-- 351
            R+ +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+ FV  ++  
Sbjct: 564 VRILVATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFVTREDWG 623

Query: 352 MQRRAERLFREANVSV---VWEPAPSVEAIRERDA 383
           M +    + +EA   V   ++  A   +A+++R A
Sbjct: 624 MAKELIDILQEAEQDVPPELYNMATRFKAMKDRRA 658


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 183/338 (54%), Gaps = 12/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q   + P +  KD +  AQ+G+GKT AF + +   +           +P A+
Sbjct: 39  GYKIPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQRIDI------GLKSPQAI 92

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q  + ++ + ++  V VA CIGG  V  +    Q+  H++V TPGRL   
Sbjct: 93  ILSPTRELALQTLKVVDGIGSRLKVQVAQCIGGTQVDDDIAAAQS-CHLIVATPGRLLSL 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K +  S++K VVLDEADEML  GF + I  I+       ++++ SAT+ P I  L +
Sbjct: 152 LQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLVSATLPPEILELTR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFCSTRAS 256
            + +D V + +         I  R  +V L D  +   + +I +    +  ++FC++   
Sbjct: 212 QFMRDPVSILVKEAELTLDGI--RQYVVELQDAWKTEVVEDIYKVLSVQQGVIFCNSIGR 269

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ ARGID+ ++ LV
Sbjct: 270 VKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIARGIDVQNVSLV 329

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           I+ ++   PE  LHR GR+GR GRKG+++ FV  ++ Q
Sbjct: 330 INYDIPREPETYLHRIGRSGRFGRKGVAINFVTDKDKQ 367


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 185/340 (54%), Gaps = 7/340 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           Q + +AL+E GY  LT +Q+  + P LR   DVL +AQTG+GKT AF L +   +L   D
Sbjct: 10  QELVKALTEIGYEKLTPIQKQAI-PQLRRGHDVLANAQTGTGKTAAFSLPIIQKML---D 65

Query: 68  RFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              P S     AL +APTREL  Q+   ++     T +      GG  +  + + L++G 
Sbjct: 66  NPQPRSRMNVRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKKLESGC 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL +H+  + + +S+++ +V DEAD MLD+GF   I  IL +     ++++F
Sbjct: 126 DILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTPQIMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  LA        R+++  EN     + +    V    +   +  ++     +
Sbjct: 186 SATFSSQMNKLAGELLNKPKRISVTPENSTAETVAHVVYPVDEERKREMLSELIGKKNWQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF + + + ++  + L     + V   G+ +Q  R  AL+  ++G+ARV +AT+VAA
Sbjct: 246 QVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARVMVATEVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RG+D+  L  V++ ++    E+ +HR GRTGRAG++G +V
Sbjct: 306 RGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAV 345


>gi|126323567|ref|XP_001370574.1| PREDICTED: similar to R27090_2 [Monodelphis domestica]
          Length = 491

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  + T VQ+  +   L  +D +  A+TGSGKT AF L +   L    D F        L
Sbjct: 21  GLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPILQKL--SEDPF----GIFCL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TPGRL DH
Sbjct: 75  VLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADH 134

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           +R     NI  ++ +V+DEAD +L+ G   F  D+E I D++P +R+ L+FSAT++  + 
Sbjct: 135 LRSSNTFNIKKIRFLVMDEADRLLEQGCTDFTKDLEVIFDAAPAQRQTLLFSATLTDTLK 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNAIVF 250
            L              +E R    +D R +LV    +D  +V++++     H   + I+F
Sbjct: 195 VLQGIATNKPFFWEAPAEVRTVEQLDQRYLLVPEKVKDAYLVHLIQTFQDEHEDWSIIIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST  +      +L    F  VAL   + Q+ R  AL   +    R+ IATDVA+RG+D+
Sbjct: 255 TSTCKTCQVLNMMLRRFNFPSVALHSMMKQKARFAALAKFKSSVYRILIATDVASRGLDI 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++VI+      P+  +HR GRT RAGR G+++ ++ Q
Sbjct: 315 PTVQVVINHNTPGLPKIYIHRVGRTARAGRDGIAITLVTQ 354


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 189/365 (51%), Gaps = 12/365 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L+  D +  AQ+G+GKT  F   ++S  L   D      A  AL
Sbjct: 42  GFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATF--VISSLQLINYD----YVACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L +  LK  +LDEADEML  GF+  I  +        ++ +FSAT+   I  L  
Sbjct: 156 IDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D   + +  +      I  R   VA+   +   + + ++        +I++C+TR 
Sbjct: 216 RFMRDPKTILVKKDELTLEGI--RQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRK 273

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +   LF V  + G++ Q++R   ++  R G  RV + TD+ ARGID+  + L
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VI+ +L  +P+  +HR GR+GR GRKG+++  +  + + + +    E+  S   E  P +
Sbjct: 334 VINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMP-L 392

Query: 376 EAIRE 380
           E I++
Sbjct: 393 EVIKK 397


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 183/343 (53%), Gaps = 8/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  + + T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKL---DDGGYPK 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
            A   + ++PTRELA Q+ + ++   Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  DAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLRLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   VLDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPDTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPAKIEELAKTLLKNPVEIKLAV-SKPAEKIKQEAYVCYETQKLGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC ++  V +    L         +  +L Q ER + +   + G+  V +ATD+ ARGI
Sbjct: 250 IFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSED 352


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 294 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 353

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 354 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 413

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++      S +
Sbjct: 414 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPGMPSKE 473

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 474 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 533

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 534 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 593

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 594 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 181/343 (52%), Gaps = 8/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKL---DDGGYPD 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
           +A   L ++PTRELA Q+ + ++   Y   GV      GG   +R   E + LQ GA +V
Sbjct: 71  NAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+   + +A  ++    I   A +   + +   I +I +    +  I
Sbjct: 191 MPDKIEDLAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYETQKMGIIKDIFKNGDLERVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC ++  V +    L         +  +L Q  R + +   + G+  V +ATD+ ARGI
Sbjct: 250 IFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + ++
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSED 352


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 199/409 (48%), Gaps = 40/409 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
            PQ I EAL  +G    T +Q   L   L  +D++  A TGSGKT+ F  A+ + L A E
Sbjct: 200 FPQGILEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVF--AIPAILRAME 257

Query: 66  NDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAK--TGVV------------VAVC 108
            +  +P +    P  L IAP+RELA Q    +E+ YA   TG+               +C
Sbjct: 258 MEMRAPVTDSEGPFCLLIAPSRELAQQTHEVVEY-YASYLTGLPSSRSRHRLPRLRCQLC 316

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           IGG S+ R+  +++ G HIV  TPGRL   +  K   ++    + LDEAD M+DLGF D+
Sbjct: 317 IGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDLGFEDE 376

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +   LD    +R+ L+FSAT+   I   A +   + V +N+      + D+      V  
Sbjct: 377 VRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNPVTINVGRAGAANLDVVQEVEYVKA 436

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +   ++  L+   A   +VFCS +AS     + L        A+ G L Q ER  + +
Sbjct: 437 ESKLTYLLQCLQ-KTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSERHKSTR 495

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + + G   V I TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   I
Sbjct: 496 LFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTGVATTFI 555

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
                          N SV       ++AI E   QR+   P FL+ ++
Sbjct: 556 ---------------NKSVDETVLLDLKAILEEAGQRV---PPFLEHLE 586


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 189/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+ + T +Q+      +  +D++  + TGSGKT+++ L     + A+ 
Sbjct: 133 FPNYVLKEVQALGFESPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ- 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E    +  T  +   C+ GGV    + RDL  G 
Sbjct: 192 PLLAPGDGPIVLVLAPTRELAVQIQQECT-KFGHTSRIRNTCVYGGVPRGPQIRDLARGV 250

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ +MF
Sbjct: 251 EICIATPGRLLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMF 310

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILRY--- 241
           SAT    +  LA++Y KD ++V + S +   S +I     +V  +D+   +   L     
Sbjct: 311 SATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSKDLEKAME 370

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+      T+ L +  +  +A+ G+ +Q ER   L   R G++ + +AT
Sbjct: 371 DKESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVAT 430

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +     Q   ++A  L  
Sbjct: 431 DVASRGIDVKGITHVFNFDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTQENSKQARDLIG 490

Query: 360 -FREANVSV 367
             REA  ++
Sbjct: 491 ILREAKQNI 499


>gi|237843843|ref|XP_002371219.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
 gi|211968883|gb|EEB04079.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
          Length = 1158

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 183/368 (49%), Gaps = 27/368 (7%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 744  LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 803

Query: 65   ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 804  PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 863

Query: 125  AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
            A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 864  AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 923

Query: 180  -------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                               R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 924  DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 983

Query: 221  YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             R   V  + +   + ++L  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 984  QRVEFVPEARKKQRLQDVLE-NATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 1042

Query: 281  QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 1043 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 1102

Query: 341  KGMSVFVI 348
            KG+++  +
Sbjct: 1103 KGLAISFL 1110


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 197/371 (53%), Gaps = 11/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE- 357
           TDVA+RG+ ++ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E 
Sbjct: 396 TDVASRGLGNVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 455

Query: 358 -RLFREANVSV 367
            ++  EAN ++
Sbjct: 456 IKVLEEANQAI 466


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+ KDVL  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMRFDECTPVQEKCIPEILKGKDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
           SA   + ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  SAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYETQKIGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V +    L+        +  +L Q++R++ +   + G+  V +ATD+ ARGI
Sbjct: 250 IFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +
Sbjct: 310 DIDDITMVINYDVPHDAEDYVHRIGRTARADRDGKAITFV 349


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 188/367 (51%), Gaps = 9/367 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L  
Sbjct: 125 VKTFDEAGFPAYVLSEVKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 184

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
              + A+    +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    +
Sbjct: 185 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPKGPQ 242

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+    
Sbjct: 243 IRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 302

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAI 235
             R+  M+SAT    +  LA ++  D ++VN+ S +    H       V+     RD  I
Sbjct: 303 PDRQTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMI 362

Query: 236 VNI--LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++  +    +   I+F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 363 KHLEKIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQG 422

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRT RAG KG ++     +  
Sbjct: 423 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTDNS 482

Query: 354 RRAERLF 360
           ++A  L 
Sbjct: 483 KQARDLI 489


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 175/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +D +  AQ+G+GKT    LA+   +              AL
Sbjct: 43  GFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALAVCQMIDTATREVQ------AL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     V    CIGG S+  + R L+ G H+V GTPGR+ D 
Sbjct: 97  ILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVYDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 157 IKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTN 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 217 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LVI
Sbjct: 277 DWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVI 336

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 337 NYDLPNNRELYIHRIGRSGRFGRKGVAI 364


>gi|45198439|ref|NP_985468.1| AFL080Wp [Ashbya gossypii ATCC 10895]
 gi|74693084|sp|Q755A5|DBP3_ASHGO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|44984326|gb|AAS53292.1| AFL080Wp [Ashbya gossypii ATCC 10895]
          Length = 535

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/315 (35%), Positives = 179/315 (56%), Gaps = 12/315 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KDV+  A+TGSGKT AFG+   ++L++E    S       L I+PTRELA Q+   L  L
Sbjct: 161 KDVIGVAETGSGKTFAFGVPAINSLMSEK---STPRGVKCLVISPTRELASQIYDNLVQL 217

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
             K G+      GGV    +R  L+  A +VV TPGRL D I      ++ ++ +VLDEA
Sbjct: 218 TDKVGLNCCCVYGGVQKDSQREQLKK-AQVVVATPGRLLDLIEEGSAKLAGVQYLVLDEA 276

Query: 158 DEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           D ML+ GF +DI+ I+ ++    R+ LMF+AT    +  LA  + +  V+V+I + +   
Sbjct: 277 DRMLEKGFEEDIKRIIKETKSDVRQTLMFTATWPKEVRELASTFMRAPVKVSIGNRDELS 336

Query: 217 SDIDYRAVLVALS--DRDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVLAEHLF 269
           ++     V+  +    ++  ++ +L+ +  GAK     ++F   +   SR  + L  + +
Sbjct: 337 ANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYKKEASRVERNLKYNGY 396

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
            V A+ G+LSQQ+R+ AL   + G A + +ATDVAARG+D+P+++ VI+       E+ +
Sbjct: 397 NVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYV 456

Query: 330 HRSGRTGRAGRKGMS 344
           HR GRTGRAG  G++
Sbjct: 457 HRIGRTGRAGATGVA 471


>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
 gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
          Length = 412

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +   L  +  R  P  
Sbjct: 16  AIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQHL-QDFPRKRPGP 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + V    GG+S       L     IVV TPG
Sbjct: 75  ARI-LILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLGKTQDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      +R+ L+FSAT+    
Sbjct: 134 RLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERLNHECRWRRQSLLFSATLEGKG 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +   ++    + V VN     R+   I    +     D   A++  +    A+  I+F  
Sbjct: 194 VREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLALLENIIKEQAERTIIFVK 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  +      L         + GE++Q  R+N +   RDG   V IATDVAARGIDLPD
Sbjct: 254 TRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNVLIATDVAARGIDLPD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           +  VI+ +L    E  +HR GRT RAG+KG ++ ++    QNM  R  R  +E
Sbjct: 314 VSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQNMIERISRYMKE 366


>gi|260912843|ref|ZP_05919329.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
 gi|260633221|gb|EEX51386.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 182/346 (52%), Gaps = 5/346 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +  AL  +G+   T +Q   L   L  KD+   AQTG+GKT+AF  A    
Sbjct: 36  FSDLPLNSKVLSALERKGFEYCTPIQALSLPISLAGKDIAGQAQTGTGKTMAFLTATFHH 95

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL         S P AL +APTRELAVQ+  + E L   T +   +  GG    ++ + +
Sbjct: 96  LLTHQSE-KNTSQPRALILAPTRELAVQINNDAELLSKATNLKTGLAYGGDGYEKQLKTI 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+ 
Sbjct: 155 EKGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPEA 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   V I    +    I       +  D+   ++ +L
Sbjct: 215 RLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLL 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         L+    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 275 EEEWPERCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 335 ATDVAARGLHISDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGVSI 380


>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 449

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 181/345 (52%), Gaps = 10/345 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  N    I   +   GYV  T +Q   +   L   DV+  AQTG+GKT AF L +
Sbjct: 1   MKNFQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPI 60

Query: 59  ASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L+  E  +        AL I PTRELA QV ++ + L +KT +      GGVS+ ++
Sbjct: 61  LHRLMQGERGKIR------ALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IVV  PGRL DH++ + + +S ++ +VLDEAD M D+GF  DI  I+    
Sbjct: 115 INRLRSGVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLS 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT+   I  LA+      V V +  +    S + +    V    +   ++ 
Sbjct: 175 HKRQTLLFSATMPDEIRKLAQEALTKPVTVQLG-KTAPASTVKHALYPVKQHLKIPLLLK 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL++   ++ ++F  T+         L    ++  +  G LSQ +R  AL   R+G  ++
Sbjct: 234 ILQHTDTQSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +ATD+AARGID+  +  VI+ ++   PE  +HR GRTGRA R G
Sbjct: 294 LVATDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTG 338


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 260 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 319

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  ++  E       T V   V  GG  +    R + 
Sbjct: 320 GITASRFKELQEPECIIVAPTRELVNKIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 379

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 380 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 439

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 440 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 499

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 500 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 559

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 560 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 607


>gi|308504808|ref|XP_003114587.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
 gi|308258769|gb|EFP02722.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
          Length = 631

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 185/365 (50%), Gaps = 22/365 (6%)

Query: 5   ENIPQVIGEAL-------------SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
           ENIP  IG  L             +E+G V  T++Q   +   L  +D++  A TGSGKT
Sbjct: 183 ENIPPPIGSFLEMKFPKTLLEFMQNEKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKT 242

Query: 52  VAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY---AKTGVV-- 104
           + F L L    L +  +  F     P  L I P+RELA Q+   +  ++    K G+   
Sbjct: 243 MTFVLPLVMFCLEQELKLPFMRNEGPFGLIIVPSRELARQIYDLVIEMFDAINKAGLPEM 302

Query: 105 -VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              +CIGGV +  + +D +NG HIVV TPGRL D +  K +N+   + +VLDEAD MLD+
Sbjct: 303 RAGLCIGGVPIGEQAKDFRNGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDM 362

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF D+I+ I      +R+ L+FSAT+   I   AK+     + VN+        ++    
Sbjct: 363 GFEDEIKSIFYFFKAQRQTLLFSATMPKKIQFFAKSALVQPIVVNVGRAGAASLNVLQEL 422

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V   ++   ++  L+    K  ++F   +  V    + L     +V ++ G   Q +R
Sbjct: 423 EFVRSENKLVRVLECLQKTSPK-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDR 481

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              ++  R     V +ATDVA++G+D   +E VI+ ++  + EN +HR GRTGR+GRKG+
Sbjct: 482 HAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGL 541

Query: 344 SVFVI 348
           +   I
Sbjct: 542 ATTFI 546


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 184/358 (51%), Gaps = 11/358 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F   ++S  L   D      A  AL
Sbjct: 42  GFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATF--VISSLQLINYD----VVACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L +  LK  +LDEADEML  GF+  I  +        ++ +FSAT+   I  L  
Sbjct: 156 IDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D   + +  +      I  R   VA+   +   + + ++        +I++C+TR 
Sbjct: 216 RFMRDPKTILVKKDELTLEGI--RQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRK 273

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +   LF V  + G++ Q++R   ++  R G  RV + TD+ ARGID+  + L
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           VI+ +L ++P+  +HR GR+GR GRKG+++  +  + + + +    E+  S   E  P
Sbjct: 334 VINYDLPTSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMP 391


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 183/344 (53%), Gaps = 12/344 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT +F L     LL +  R  
Sbjct: 14  LNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPALQHLL-DFPRRK 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P    + L + PTRELA+QV    + L A T + +   IGGVS   +   L     IVV 
Sbjct: 73  PGPCRM-LILTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLPALTKTTDIVVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I+  +  ++  ++FSAT+ 
Sbjct: 132 TPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVAEARYRKHTMLFSATLE 191

Query: 191 PA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGA 244
            A +   A    KD V ++      +   I      + L+D D A     + +IL+    
Sbjct: 192 GAGLEKFANEILKDPVELHAEPPRSERRPITQ---WIHLAD-DAAHKLALLTHILKDPET 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F  TR  ++  +  L         + GE+ Q +R  +++   +G     IATDVA
Sbjct: 248 QKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPFLIATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++
Sbjct: 308 ARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLV 351


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 196/372 (52%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDL--PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           TDVA+RG+ L   D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E
Sbjct: 396 TDVASRGLGLYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARE 455

Query: 358 --RLFREANVSV 367
             ++  EAN ++
Sbjct: 456 LIKVLEEANQAI 467


>gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197]
 gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
 gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
          Length = 444

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|328867087|gb|EGG15470.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 637

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 250/482 (51%), Gaps = 23/482 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +P  +    A++  G+  +T +Q   + P L+ +D+L +A+TGSGKT+AF +     
Sbjct: 149 FEKLPIEEKTKLAIATMGFKTMTPIQAKSIVPLLQGRDMLGAARTGSGKTLAFLIPAIEV 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+  N  F P +    + ++PTRELA+Q+      L A       + +GG     E   L
Sbjct: 209 LVKSN--FYPRNGTGVIIMSPTRELALQIYGVAAELMAHHSQTHGIIMGGADKKAEAERL 266

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G +++V TPGRL DH++  +G  + +LK +V+DEAD ML++GF +++  I+   PK+R
Sbjct: 267 VKGVNLLVATPGRLLDHLQNTRGFVVKNLKCLVIDEADRMLEVGFEEEMHQIVKLLPKER 326

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV- 236
           + ++FSAT S  +  +A+ +++ D V V +  ++RQ S ++   +  +V  S++   ++ 
Sbjct: 327 QTMLFSATQSNKVDAIARVSFRSDPVYVGV-DDDRQVSTVEGLEQGYVVCPSEKRFLLLY 385

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  IVF S+  SV    ++L      V+A  G+  Q  R+N      + +  
Sbjct: 386 TFLKKNLNKKVIVFFSSCNSVKFHAELLNYIDIPVLAFHGKQKQTLRTNTFYEFVNAQKG 445

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQR 354
           + + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG ++ F++PQ +  
Sbjct: 446 ILLCTDVAARGVDIPSVDWIIQYDPPDDPKEYIHRVGRTARGTGKKGRALMFLLPQELGF 505

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--- 411
                  +  ++    P   V  ++E+  ++++    +L +   D  +   +  A H   
Sbjct: 506 LKYLKLAKVPLNEYEFPQKKVSNVQEQ-LEKLISHNFYLHNSARDAYRSYILSYASHSLK 564

Query: 412 ---DPEKIAAGFLRIHRAGLCAPEEITPVSLV--SGRDRFRDDSRAFKVGGGSRDNFKGS 466
              D   +  G + I   G   P +I   +++  S   ++    +A +  GGSRD  + +
Sbjct: 565 DIFDVNSLQLGHVSI-AFGFQNPPKIPLTNIISTSALSKYESKDKAQR-PGGSRDRSQPA 622

Query: 467 SW 468
           S+
Sbjct: 623 SY 624


>gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 442

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 175/337 (51%), Gaps = 8/337 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL ++GY   T +Q   + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  EALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    L+ +   ++++L+      ++
Sbjct: 195 AIREFAERILTEPVEIEADPSRRERKKILQWYYRA--DDLAHKTRMLIHLLKQEDVTKSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ M + R  V +ATD+AARG+
Sbjct: 253 IFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVNVLVATDIAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+ D+  V + +L    +  LHR GRTGRAGRKG ++
Sbjct: 313 DINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAI 349


>gi|71282546|ref|YP_268161.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71148286|gb|AAZ28759.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 401

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 188/348 (54%), Gaps = 11/348 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+++ GY   T++Q+  +   L  KD++ +AQTG+GKT +F L L   L   N ++ 
Sbjct: 12  ILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQL---NSQYK 68

Query: 71  PASAPL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
                L      AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  
Sbjct: 69  ETGKKLRAKRIRALILVPTRELAVQVEASISQ-YAKYLDISSMAMYGGVDAQEQKQRLIW 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D    + L+   L  +VLDEAD MLD+GF DDI  I++  P+ R+ L
Sbjct: 128 GVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LAK      V ++I ++      I+   V V  +++   + +I+    
Sbjct: 188 LFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITTQN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F  T+   ++    L +      ++    +Q  R   L   + G+ +  +AT +
Sbjct: 248 WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARG+D+ +L  VI+ +L +  ++ +HR GRTGRAG  G ++ ++ ++
Sbjct: 308 AARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKD 355


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 181/343 (52%), Gaps = 8/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+ +DVL  AQTG+GKT A+ L + S + + N    P 
Sbjct: 14  DALYDMRFDTCTPVQEKCIPEILKGRDVLGVAQTGTGKTAAYLLPIMSKIDSGN---YPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   L ++PTRELA Q+ + ++   Y   GV      GG   +R   E + L+ GA +V
Sbjct: 71  DAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELKSLRMGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   H+    +++S +   VLDEAD MLD+GF +DI  I    PK  + +MFSAT
Sbjct: 131 IATPGRFISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKGLPKTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA+   K+ V V +A  ++    I   A +   + +   I  I +    K  I
Sbjct: 191 MPDKINELARTLLKNPVEVKLAV-SKPAEKIKQTAYVCHETQKLGIIKKIFKQGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC  +  V + ++ L         +  +L Q +R   +   + G+  V +ATD+ +RGI
Sbjct: 250 IFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVATDILSRGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKD 352


>gi|224074899|ref|XP_002304481.1| predicted protein [Populus trichocarpa]
 gi|222841913|gb|EEE79460.1| predicted protein [Populus trichocarpa]
          Length = 798

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 193/362 (53%), Gaps = 37/362 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFS 70
           +AL   GYV +T VQEA L+  L   KD +V A+TG+GK+ AF L A+ + L A +    
Sbjct: 341 KALIAAGYVQMTRVQEATLSVCLEAGKDAMVKAKTGTGKSAAFLLPAIEAVLKATSSNDK 400

Query: 71  PASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH-I 127
           P  +P+ AL + PTRELA Q+  E    L    G+ V   +GG     ++R L++  + I
Sbjct: 401 PQVSPIYALILCPTRELASQIAAEANAMLKYHDGIGVLTLVGGTRFKDDQRRLESDPYQI 460

Query: 128 VVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +V TPGRL DHI  KG   +++  LK ++LDEAD +LDLGFR D+E ILD  P++R+ L+
Sbjct: 461 IVATPGRLLDHIENKGGLSVHLMGLKVLILDEADHLLDLGFRKDMEKILDCLPRQRQSLL 520

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-------------RAVLVALSDR 231
           FSATI            K+  R++     R+H+ I+              ++ LV+    
Sbjct: 521 FSATIP-----------KEVRRISQLVLKREHAFINTVGVGCVETPAKIKQSFLVSPHRL 569

Query: 232 DNAIVN-ILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              +V+ +L+ H  +      IVFC+T    S    +L E    V  +     Q  R+  
Sbjct: 570 HFQVVHHLLKEHILQAPDYKVIVFCTTGMVTSLMYLLLREMNMNVREMHSRKPQLYRTRV 629

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
               R+ +  + + +DV+ARG++ PD+ LVI   +  + E+ +HR GRTGR G+ G  + 
Sbjct: 630 SNEFRESKRLILVTSDVSARGMNYPDVTLVIQVGIPYDREHYIHRLGRTGREGKDGEGIL 689

Query: 347 VI 348
           ++
Sbjct: 690 LL 691


>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
 gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
          Length = 443

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 181/340 (53%), Gaps = 2/340 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    G+   T +QE  +   L+ KD++  A TGSGKT AF L     +L ++      
Sbjct: 23  EACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTLEAILKDSQERKSV 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
                  ++PTRELA+Q+  + E L +  GV   V +GG  + ++   L +   H++VGT
Sbjct: 83  QPFFVCVLSPTRELAIQIAEQFEALGSGIGVRCVVLVGGEDMLQQSIVLAKKRPHVIVGT 142

Query: 132 PGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGRL DH+   KG ++  LK ++LDEAD +L + F   ++ IL + P+ RR  +FSAT++
Sbjct: 143 PGRLADHLSNTKGFSLHALKYLILDEADRLLSMDFEKSLDEILKAIPRNRRTYLFSATMT 202

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                L +   ++ V++  A +      ++     +  + +D  +V++L       ++VF
Sbjct: 203 NKAGKLQRACLRNPVKIEAAFKYSIVDTLEQGFYFMPAALKDCYLVHVLSSKKGATSMVF 262

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T         VL +     + ++G++SQ  R  AL   + G   + I TDVA+RG+D+
Sbjct: 263 TRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALNKFKAGEFNILICTDVASRGLDI 322

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             +++V++  + +N ++  HR GRT RAGR G+++ ++ Q
Sbjct: 323 LSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQ 362


>gi|126644819|ref|XP_001388126.1| U5 snRNP 100 kD protein [Cryptosporidium parvum Iowa II]
 gi|126117354|gb|EAZ51454.1| U5 snRNP 100 kD protein, putative [Cryptosporidium parvum Iowa II]
 gi|323509541|dbj|BAJ77663.1| cgd3_3690 [Cryptosporidium parvum]
          Length = 529

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 185/354 (52%), Gaps = 11/354 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           ++  E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  +   
Sbjct: 151 EIQTELIRNIGYEKPTPIQMQCIPIGLKLRDMIGIAETGSGKTIAFLIPLISYVGNKPIL 210

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV----CIGGVSVHRERRDLQ 122
           D  +    P  L +AP RELA+Q+  E + L  KT  +  +     +GG ++ ++   L+
Sbjct: 211 DYKTSQEGPYGLILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGGRNIDQQAFSLR 270

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KR 180
            G  I++ TPGR+ D +      +     V+LDEAD M+DLGF+D + FILD  P   +R
Sbjct: 271 KGVEIIIATPGRMQDCLEKTLTVLVQCSYVILDEADRMIDLGFQDSLNFILDQIPPEIQR 330

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL- 239
              MFSAT+   +  +AK Y    + V I         I      ++ + + + ++N L 
Sbjct: 331 TTHMFSATMQKELENIAKRYLNSPINVTIGDIGAGKKSIQQILNFISENKKKSTLINTLN 390

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +       IVF + +  V    + +  H F+  +L G   Q+ R N+L + + G   + 
Sbjct: 391 NKELAVPPIIVFLNQKKMVDIVCREIVSHGFKATSLHGGKMQEVRENSLNLFKSGVFDIL 450

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           ++TDVA RGID+ ++ LVI+ +   + +   HR GRTGRAG+ G+++ F+ P++
Sbjct: 451 VSTDVAGRGIDINNINLVINYDFPKSIDTYTHRIGRTGRAGKNGIAISFITPED 504


>gi|320182099|gb|EFW57003.1| ATP-dependent RNA helicase SrmB [Shigella boydii ATCC 9905]
          Length = 444

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD   V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDASHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|320170169|gb|EFW47068.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 196/375 (52%), Gaps = 15/375 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I + L++RG    T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 273 KLPKSIIKHLAKRGIKAPTPIQIEGIPVALSGRDMIGIAFTGSGKTLVFSLPIVMFALEQ 332

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-------VAVCIGGVSVHR 116
             +  F+    P  L + P+RELA Q    L+  YAK           VA+C+GGV++  
Sbjct: 333 ELKLGFTSGEGPYGLILVPSRELAKQTYDNLQ-AYAKVLATEGFPLLRVALCMGGVNMRE 391

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D ++   +N+   + + LDEAD M+D+GF +D+  I    
Sbjct: 392 QLDSMRDGVHLMVATPGRLIDLLQKGKVNLDICRYLTLDEADRMIDMGFEEDMRTIFSFF 451

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     V VN+      + D+      V +  R   ++
Sbjct: 452 KAQRQTLLFSATMPKKIQDFAKSALVRPVIVNVGRAGAANLDVVQDVEYVNVEARLVYLL 511

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   A   I+F   +A V    + L     + VA+ G  SQ+ER  A++  +D    
Sbjct: 512 QCLQ-KTAPPVIIFAEKKADVDEIHEYLLLKGVEAVAIHGGKSQEEREWAIRSFKDHLKD 570

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFV---IPQNM 352
           V +ATD+AA+G+D PD++ VI+ ++    E  +HR GRTGR G+ G  S FV   +P+++
Sbjct: 571 VLVATDIAAKGLDFPDIQHVINFDMPEEIETYVHRIGRTGRCGKTGTASTFVNKTVPESV 630

Query: 353 QRRAERLFREANVSV 367
               + L  EA+  +
Sbjct: 631 LLDVKHLLIEAHQKI 645


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   + ++G+   T +Q       L  +D++  + TGSGKT+AF L  A   +  
Sbjct: 132 SMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAF-LLPAMIHINA 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELAVQ+  E +  + ++  +   C+ GGV    +  DL  G
Sbjct: 191 QPYLEQGDGPIVLVVAPTRELAVQIKEECD-KFGRSSEIKNTCVYGGVPKRIQVNDLNRG 249

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 250 VEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 309

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +SAT    +  LA+++     +V + S E   + DI          ++  ++   L+ HG
Sbjct: 310 WSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHLQQHG 369

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               + VF  T+      T+ L +  +Q   + G+ +Q+ER   L+  + G  +V +ATD
Sbjct: 370 HNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVLVATD 429

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+ D+++VI+ +  +N E+ +HR GR GRAG KG++V        R    L +
Sbjct: 430 VAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRELIK 488


>gi|115683622|ref|XP_784902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
 gi|115971375|ref|XP_001190564.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
          Length = 869

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 180/341 (52%), Gaps = 5/341 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ + D       
Sbjct: 427 LKKNNYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFRHIM-DQDPLEAEDG 485

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L + PTRELA+Q+ +E +      G+      GG  +  +  +L+ GA I+V TPGR
Sbjct: 486 PITLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAELKRGAEIIVCTPGR 545

Query: 135 LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +    G+  N+     +VLDEAD M D+GF   +  I+++    R+ ++FSAT   
Sbjct: 546 MIDMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIRPDRQTVLFSATFPR 605

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA+      + V +   +   SD+   A+++    +   ++ +L Y+     +VF 
Sbjct: 606 QMEALARKILTKPIEVQVGGRSVVCSDVTQHAMILEEDQKFLKLLELLGYYDEGQILVFV 665

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + S     K L +  +  +AL G + Q +R + +Q  +    ++ +AT VAARG+D+ 
Sbjct: 666 EKQESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAANVKILVATSVAARGLDVK 725

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +L LVI+ +  ++ E+ +HR GRTGRAG KG S  F++P+ 
Sbjct: 726 NLVLVINYDCPNHYEDYVHRVGRTGRAGNKGFSYTFLMPEQ 766


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 180/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A    LL
Sbjct: 9   FAIAPEVVA-GLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTATCHRLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R  L+ 
Sbjct: 68  QSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQRAQLEK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 126 GVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPDTSERL 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++ ++  
Sbjct: 186 NLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLLTLIEE 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AIVF +T+ S       L     +V  L+G+++Q++R + L     G     +AT
Sbjct: 246 EWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELDFLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P++  V + +L  + E+ +HR GRT RAG  G ++
Sbjct: 306 DVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAI 349


>gi|15603786|ref|NP_246860.1| ATP-dependent RNA helicase RhlB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|32363392|sp|Q9CJS1|RHLB_PASMU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12722355|gb|AAK04005.1| RhlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 185/347 (53%), Gaps = 7/347 (2%)

Query: 4   FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P   QV+  AL E+G+   T +Q   L   L  KDV   AQTG+GKT+AF  A   
Sbjct: 11  FSDLPLHHQVLA-ALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFH 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +         P AL +APTRELAVQ+  +   L   TG+   +  GG    ++ + 
Sbjct: 70  HLLTQQGD-KGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPK 178
           ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI ++L    +P+
Sbjct: 129 IEQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQ 188

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+S  +  LA     D   V I    +    I       +  D+   ++ +
Sbjct: 189 HRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTL 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F +T+         LA    +V  L+G+++Q++R + L+   +G   + 
Sbjct: 249 LEEEWPERCIIFANTKHRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGHLDIL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+
Sbjct: 309 VATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGESGVSI 355


>gi|325067377|ref|ZP_08126050.1| ATP-dependent RNA helicase [Actinomyces oris K20]
          Length = 370

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 173/319 (54%), Gaps = 5/319 (1%)

Query: 48  SGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
           SGKT+AF L L   L A+ D+  P   P+ L +APTRELA+Q+   +E L     + V  
Sbjct: 1   SGKTLAFSLPLVQRL-AQQDKARPGH-PIGLVLAPTRELALQIAEVIEPLARVVDMDVTT 58

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFR 166
             GGVS   + + L+ G  +VV  PGRL D + G+GL ++  ++  VLDEAD M DLGF 
Sbjct: 59  IFGGVSAKPQEKALKAGVDVVVACPGRLLD-LMGQGLVSLDEVEITVLDEADHMADLGFL 117

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            ++  IL ++P++ + L+FSAT+   + TL K +  D ++ ++         + +R  +V
Sbjct: 118 PNVRRILRATPQRGQRLLFSATLDNGVDTLVKEFLHDPLQHSVDPSTSPVDAMTHRVWMV 177

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           A     + IV  L   G    I+F  T+    R  + L +     V L G +SQ  R  A
Sbjct: 178 ADKTAKDGIVRRL-ASGEGQRILFTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERA 236

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++    G+  V +ATD+AARGID+  +ELV+H +  +  +  LHRSGRT RAG  G  + 
Sbjct: 237 MRAFSTGQVHVMVATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVIT 296

Query: 347 VIPQNMQRRAERLFREANV 365
           ++    +   + L ++A +
Sbjct: 297 LVLPEQKHDVQVLLKKARI 315


>gi|227504305|ref|ZP_03934354.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198953|gb|EEI79001.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 463

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 182/368 (49%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ I   L+++G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQEIVRVLNKQGITEPFPIQQAAIPDALAGKDVLGRGPTGSGKTFTFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T L       PA  P AL + PTRELA Q+   L+      G+ V   +GGV+++   
Sbjct: 61  L-TRLTHTGASKPAR-PRALVLTPTRELATQIHDRLDEPANALGLRVLSVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  +    LDEAD M D+GF   +  ++  +PK
Sbjct: 119 RSLARPVDLLVATPGRAQDLINQGKLSLDDVAITALDEADHMADMGFLPQVRKLMALTPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           K + L+FSAT+   +  L K +    V  + A        + +  V V   D R++ +V 
Sbjct: 179 KGQRLLFSATLDGDVDKLVKQFMHSPVTHSTAPVEAAVDTMTHHLVFVGDRDSRNDVVVR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I    G    I+F  T+  V R  K L       + L G+  Q  R+ A++   DG   V
Sbjct: 239 IAAREG--KTILFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGARTKAIEGFADGSVPV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +    
Sbjct: 297 LVATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGASGAVVTLVMDQQRDEVA 356

Query: 358 RLFREANV 365
           +L ++A V
Sbjct: 357 KLIKKAGV 364


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 182 KFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 241

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEW---LYAKTGVV---VAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+   L  + G+     A+CIGG+SV  +
Sbjct: 242 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPPLRCALCIGGMSVKEQ 301

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 302 METIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 361

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++ 
Sbjct: 362 GQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLLE 421

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  RDG+  V
Sbjct: 422 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDV 480

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 481 LGATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 531


>gi|88854728|ref|ZP_01129394.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88815889|gb|EAR25745.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 552

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 183/368 (49%), Gaps = 6/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
            +P  +  AL   G  +   +Q   L   L  +DVL   +TGSGKT+AF L + + L   
Sbjct: 10  GVPAALVAALEADGKTSPFPIQVDTLPDTLGGRDVLGRGKTGSGKTLAFALPMVARLGGK 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           LA   R      PL L +APTRELA Q+   +E L A  G+      GGVS +R+   L+
Sbjct: 70  LAGGKRRP--GRPLGLVLAPTRELATQISAVIEPLAAAYGLNTTTIFGGVSQNRQVAALK 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVV  PGRL D ++   +N+  ++  VLDEAD M DLGF   +  ILD +P   + 
Sbjct: 128 AGVDIVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPTNGQR 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +  L + +  + V  ++       S + +        +    +V  L   
Sbjct: 188 LLFSATLDNGVDKLVRRFLHNEVLHSVDEATSHVSAMTHHVFETESVESKRVLVEKL-AS 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    I+F  T+    +  + L +     V L G LSQ  R   L     G  +V +ATD
Sbjct: 247 GTGRRILFMRTKHHAKKLARQLIDAGIPAVDLHGNLSQVARDRNLAAFSAGDVKVLVATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + ++ELVIH +  +  +  LHRSGRT RAG +G  V ++    ++    L R+
Sbjct: 307 VAARGVHVDNIELVIHVDPPAEHKAYLHRSGRTARAGEEGDVVTIVLPTQRKDTAALLRK 366

Query: 363 ANVSVVWE 370
           A ++V  +
Sbjct: 367 AAITVTPQ 374


>gi|297200725|ref|ZP_06918122.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197712294|gb|EDY56328.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 721

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 35  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARLSGGR 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+    + G+ + V  GG S+  +   L+ G  
Sbjct: 95  ---TEKHRPRAVILTPTRELAMQVADALQPYGDQLGLKMKVVCGGTSMSNQIYALERGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  V+DEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 152 VLVATPGRLRDLINRGACSLQDIEVAVIDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 212 ATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIVKPKDKAPVTAAIASRKG--R 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 270 TIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 330 GIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 388


>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
 gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 441

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   + ++L+      +I
Sbjct: 195 AIREFAERILNEPVELEADPSRRERKKIQQWYYRAD--DIKHKTALLCHLLKQPDVSKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V      L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 208/419 (49%), Gaps = 29/419 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I  A+++ GY   T VQ+  + P +  +DV+  AQTG+GKT A+ L +   L   
Sbjct: 9   NFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPIIMRL--- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +++  S   A+ IAPTRELA+Q+    +     T + +    GG+    ++  +  G 
Sbjct: 66  --KYAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKELMDKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGR  D      +    L+ +VLDEAD+M+D+GF   I  IL+  P+KR+ L+F
Sbjct: 124 DIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRKRQNLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---- 241
           SAT+S  I  L+ N+ +    V +  +      ++   VL  + +    I N+L+     
Sbjct: 184 SATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVN--QVLYHVPNMKTKI-NLLKKLLDA 240

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVC 298
               K  I+FC TR +     K L       +V  L     Q  R NA+   ++   ++ 
Sbjct: 241 PDDIKKLIIFCKTRVAAEDVYKFLLRKFGEKEVRVLHANKGQNTRINAINAFKNDEVKIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRR 355
           +ATDVA+RGID+ D+  VI+ ++    E+ +HR GRTGRA + G ++ F  P  +   R+
Sbjct: 301 VATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYIRK 360

Query: 356 AERLFREANVSVVWEPAPSVEAI---------RERDAQRILQDPLFLDSIQGDEKKMVD 405
            E+L R+    V+  P   V+           +E D Q+   DP F  +    EKK V+
Sbjct: 361 IEKLIRQQIPVVLLPPDVFVDETPYEERQDQNKEIDLQKRKDDPDFKGAFH--EKKTVN 417


>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 376

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 193/344 (56%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFS 70
           AL+++ +   T++Q+ ++   L +KDVL  A+TGSGKT  + L + + L   L   +R +
Sbjct: 15  ALADQQFNEPTAIQQTVIPAILAKKDVLGIAKTGSGKTAGYVLPVLTNLQQSLGPKNRHA 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVCIGGVSVHRERRDLQNGAHI 127
                  L + PTRELA QV +E+   ++ +    V      GGVS++ +   LQ G ++
Sbjct: 75  NV-----LVLVPTRELAEQV-KEVFKTFSTSLPEAVKTLAVYGGVSINTQMMALQ-GVNV 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGRL + +    +N+S ++ ++LDEAD+ML+LGF++++  I+   P KR+ ++FSA
Sbjct: 128 LVGTPGRLLELVAANSVNLSSVETLILDEADKMLNLGFKEEVNKIIALLPAKRQNVLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  I  + +    D V V I         I   A +V+   +   + ++++ H  K  
Sbjct: 188 TLSKDIEHIHQLLLHDPVVVKIEEGEDSLELITQTAYIVSEDKKGPFLRSLIKKHRMKQV 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+   V      L ++     A   + SQ  R+++L   + GR +V +ATD+ ARG
Sbjct: 248 LVFASSIHQVEAIVNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIKVLVATDLMARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  L  VI+ EL  +P++ +HR GRTGRAG  G ++ ++  N
Sbjct: 308 IDIDGLPYVINYELPRSPKDYVHRIGRTGRAGNTGEAISLVSHN 351


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 7/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSIS----ILQQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 112 ID--TTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    + V   + +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++ ++  + +R  + + +  N
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKDIEQFYN 409

Query: 365 VSV 367
            S+
Sbjct: 410 TSI 412


>gi|320590875|gb|EFX03318.1| ATP-dependent RNA helicase dbp3 [Grosmannia clavigera kw1407]
          Length = 541

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 36/352 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------AENDRFSPAS 73
           Y   T +Q A     L  +DV+  A+TGSGKT+AF L     +L      A   +  P  
Sbjct: 137 YKKPTPIQSASWPFTLSGRDVVGIAETGSGKTMAFALPCVEAVLRAARPEAMEAKKLPNR 196

Query: 74  APL--------------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L              A+ ++PTRELA+Q    L  L A+ G+      GG S   +R 
Sbjct: 197 SKLNNKWDGKGNVAQARAVVVSPTRELAMQTHAALAPLAARVGLTAVCLYGGASKDEQRV 256

Query: 120 DLQN--GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            L+   G  ++V TPGRL D +  + ++++H+   VLDEAD MLD GF +DI  IL   P
Sbjct: 257 QLRQAGGVDVIVATPGRLKDFLADEAVSLAHVCFAVLDEADRMLDTGFEEDIRQILGQCP 316

Query: 178 KK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            +  R+ LMF+AT   ++  LA+ +  D V++       QH+    R VL        AI
Sbjct: 317 DRTQRQTLMFTATWPTSVRGLAQGFMVDPVKITTVEVMDQHAK--ERRVL--------AI 366

Query: 236 VNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +   +   A+N   +VFC  +    R    L     +V ++ G+L Q++R+ +L+  + G
Sbjct: 367 IKQEQRGAARNDRILVFCLYKKEAVRVENFLQGQGVRVCSIHGDLRQEQRTRSLEAFKTG 426

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V +ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++
Sbjct: 427 QTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKDGRAI 478


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 263 DLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 322

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 323 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 382

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 383 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 442

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 443 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 502

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 503 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 562

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 563 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 610


>gi|317494807|ref|ZP_07953218.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917132|gb|EFV38480.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 429

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 187/347 (53%), Gaps = 16/347 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----- 62
           P V+ +AL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF   LAST      
Sbjct: 18  PTVV-KALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKTLAF---LASTFHYLLT 73

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +AEN +    + P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ + 
Sbjct: 74  HPVAENRK---TNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYGGDGYDKQLKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L++G  I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   
Sbjct: 131 LESGVDILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIRWLFRRMPATN 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  +MFSAT+S  +  LA  +  +A  + +  E +    I       +  ++   +  +
Sbjct: 191 QRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+F +T+         LA    +V  L+G+++Q++R   L     G   + 
Sbjct: 251 IEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 311 VATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSI 357


>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM 10]
 gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           32953]
 gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
 gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
 gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
 gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
 gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
 gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
 gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 441

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   + ++L+      +I
Sbjct: 195 AIREFAERILNEPVELEADPSRRERKKIQQWYYRAD--DIKHKTALLCHLLKQPDVSKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V      L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 181/330 (54%), Gaps = 7/330 (2%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  +D++  AQTGSGKT++F L  +   +    R      P+ L +APTRELA QV +E+
Sbjct: 132 LSGRDMVGIAQTGSGKTLSFLLP-SIVHIKHQPRVERGEGPIVLVLAPTRELAQQV-QEV 189

Query: 95  EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
              Y     V +VC+ GG S   ++R+L+ G  + + TPGRL D +R    N+     +V
Sbjct: 190 AIEYGSRNGVRSVCVYGGASKGPQQRELERGVEVCIATPGRLLDFLRMGVTNLRRCTFLV 249

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-E 212
           LDEAD MLD+GF   I  I+D +   R+ +MFSAT    +  LA+++ +D V VNI S +
Sbjct: 250 LDEADRMLDMGFEPQIRQIVDQTRPDRQTIMFSATWPTEVRALAESFLRDYVFVNIGSLQ 309

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
              + +I+    +V+  ++   ++ +L+          ++F  T+      T+ L +  +
Sbjct: 310 LAANHNIEQVVEIVSEFEKHERLLKLLQEVTKDSDPKVLIFVETKRKADELTRWLRQKGW 369

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
            V+++ G+ +Q ER   L   R G++ + IATDVAARG+D+ D++ V++ +     E+ +
Sbjct: 370 PVLSIHGDKAQGERDWVLNEFRTGKSPIVIATDVAARGLDVDDIKFVVNYDYPQCSEDYV 429

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           HR GRTGR  R G +      N  R A+ L
Sbjct: 430 HRIGRTGRCNRTGTAYTFFNANNARYAKDL 459


>gi|302819961|ref|XP_002991649.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
 gi|300140498|gb|EFJ07220.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
          Length = 585

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 178/357 (49%), Gaps = 17/357 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L E+     T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 147 FPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMLALQEE 206

Query: 67  DRFSPASA--PLALAIAPTRELAVQ----------VGRELEWLYAKTGVVVAVCIGGVSV 114
              S  S   P  L + P+RELA Q          V RE  +   ++     +CIGG+ +
Sbjct: 207 QSSSLGSGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRS----MLCIGGIDM 262

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   ++ G HIVV TPGRL D +  K +N+   K + LDEAD ++DLGF +DI  + D
Sbjct: 263 RSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREVFD 322

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ L+FSAT+   I   AK+     V VN+      + D+      V    +   
Sbjct: 323 HFKAQRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEAKIVY 382

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L+       ++FC  ++ V    + L       VA+ G   Q+ER  A+   + G+
Sbjct: 383 LLECLQ-KTPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIASFKQGK 441

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             V +ATD+A++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 442 KDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINKN 498


>gi|304413657|ref|ZP_07395101.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283748|gb|EFL92142.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 449

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 178/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+++GY   T++Q   +   +  +D+L SA TG+GKT AF L +   LL    R S  
Sbjct: 17  KALNDKGYQRPTAIQAMAIPAAMEGRDLLGSAPTGTGKTAAFLLPILQHLLDFPRRKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +    GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEQANELAVNTSLAITTITGGVAYMNHAEIFTENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIQEENFDCHAVETLILDEADRMLDMGFAKDIEAIAAKTCCRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   AK   KD + ++     R+   I    YRA    +  +   + ++L     K +I
Sbjct: 195 AIREFAKRILKDPLELDADPSRRERKKIIQWYYRA--DDIEHKKALLCHLLTQPEVKKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T   V      L E       L G++ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTCERVHELVGWLREADIHAWYLEGKMIQAKRTEAVIRLNDGRINVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAGRKG ++ +I
Sbjct: 313 DIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGTAISLI 352


>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 501

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 201/351 (57%), Gaps = 17/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+ ++T VQ   + P L  +DVL +A+TGSGKT+AF +     L   + +F P 
Sbjct: 50  KAIEKMGFTSMTPVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--HSLKFKPR 107

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G +++V
Sbjct: 108 NGTGVIVITPTRELALQIFGVVRELMEFHSQT---FGIVIGGANRRQEAEKLIKGVNMLV 164

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+V+DEAD +L++GF D+++ I+   P + R+ ++FSA
Sbjct: 165 ATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSA 224

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHG 243
           T +  +  LA+ + +K  + +N+ +E R  S  D   +  +V  SD R   + + L+ + 
Sbjct: 225 TQTTKVEDLARISLRKGPLFINVVTE-RDTSTADGLEQGYVVCESDKRFLLLFSFLKRNQ 283

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + TDV
Sbjct: 284 KKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDV 343

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           AARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 344 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 394


>gi|307189936|gb|EFN74172.1| Eukaryotic initiation factor 4A-II [Camponotus floridanus]
          Length = 423

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 176/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGLDVIAQAQSGTGKTATFSIS----ILQQ 111

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 112 ID--TSIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HVVVGTPGRVYDMISRRALRANSIKLFVLDEADEMLSRGFKDQIHDVFKLLPNEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    V V   D +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMHKRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIH 375


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 195/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 351 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 409

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y++   + + CI GG     + RDL+ G
Sbjct: 410 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG 468

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 469 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 528

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++    
Sbjct: 529 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 588

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 589 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 648

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 649 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 708

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 709 SVLREANQAI 718


>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661437|sp|Q6FW42|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
          Length = 725

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 192/349 (55%), Gaps = 18/349 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + LS  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL     + 
Sbjct: 217 VMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YK 271

Query: 71  PA--SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           PA  ++   + + PTRELA+QV   G+++      + +   + +GG+++ ++ + L+   
Sbjct: 272 PAKVASTRVIVLTPTRELAIQVADVGKKIGQFV--SNLTFGLAVGGLNLRQQEQMLKTRP 329

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P KR+ L+
Sbjct: 330 DIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQTLL 389

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY- 241
           FSAT++  I  L     K  VR+ I    +  + +    V +   D  + + + N++R  
Sbjct: 390 FSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRKRDHLKPSLLFNLIRKL 449

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +G K  +VF + +    +   +L      V  L G L+Q++R +++   +  +  V I
Sbjct: 450 DPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLI 509

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G S+  +
Sbjct: 510 CTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFV 558


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/364 (34%), Positives = 187/364 (51%), Gaps = 17/364 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
           ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L AL   L  
Sbjct: 9   DLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQYLLDF 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  PA     L + PTRELA+Q+  +   L   T + +    GGV        L   
Sbjct: 69  PRKKSGPARM---LILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILSTT 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL ++I G+  +   ++ +VLDEAD MLD+GF   ++ +      +++ L+
Sbjct: 126 QDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQTLL 185

Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           FSAT+    I    ++  K+   ++  S  R+   I    +RA      D     +NIL+
Sbjct: 186 FSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRA------DSAKHKLNILK 239

Query: 241 Y---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +     A+ +I+F  TR  +      L       V + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   E
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIE 359

Query: 358 RLFR 361
           R+ R
Sbjct: 360 RVAR 363


>gi|195390582|ref|XP_002053947.1| GJ24162 [Drosophila virilis]
 gi|194152033|gb|EDW67467.1| GJ24162 [Drosophila virilis]
          Length = 710

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 191/355 (53%), Gaps = 9/355 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE + ++G+ + + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 302 QCFAEYPDLLGE-IQKQGFAHPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 360

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
           T      R +   A + L +APTRELA+Q+  E+E        + AVCI GG + + +  
Sbjct: 361 TEYQSTPRGTRGGANV-LVLAPTRELALQI--EMEVKKYSFRQMKAVCIYGGGNRNMQIS 417

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D++ GA I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      
Sbjct: 418 DVERGAEIIICTPGRLNDLVQAGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPD 477

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--- 236
           R+ +M SAT  P +  LA++Y KD ++V + S +   +    + + +   DRD   V   
Sbjct: 478 RQTIMTSATWPPGVRRLAQSYMKDPIQVCVGSLDLAATHSVEQVIELLEDDRDKFHVLKS 537

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +         IVFC  +A     +  L+   F    + G   Q +R  A+  ++ G  R
Sbjct: 538 FVKNMSKTDKIIVFCGRKARADDVSSDLSLAGFATQCIHGNRDQSDREQAIADIKSGIVR 597

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  I ++
Sbjct: 598 ILIATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRLGTSISFITRD 652


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 188/339 (55%), Gaps = 12/339 (3%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           VQ  ++   L  ++++V ++TGSGKT +F + L   +  E +         AL + PTRE
Sbjct: 29  VQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQ------ALIVVPTRE 82

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA+QV  E+  +     V  +   G   +  +  +L+   HIVV TPGR+ DHI    + 
Sbjct: 83  LALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQRVHIVVATPGRIIDHINKGTIK 142

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           + ++K +++DEAD+M + GF + +E IL + PK++ + +FSATI   I  + + Y  D  
Sbjct: 143 LENIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKYICEKYIPDYS 202

Query: 206 RVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAKNAIVFCSTRASVSRF 260
            +NI  EN+  ++   R +   ++  ++R+  I+   ++     K+ I+FC+T+  VS+ 
Sbjct: 203 VINI-EENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKSVIIFCNTKEKVSKL 261

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              +++  F +  L  +LSQ+ R   ++  +  +  V +++DVA+RGI + D+ LVI+ +
Sbjct: 262 YNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLVSSDVASRGIHIDDISLVINYD 321

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +  + EN +HR GRTGR    G ++ ++ +  ++  E +
Sbjct: 322 VPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIENI 360


>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
          Length = 698

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/374 (30%), Positives = 192/374 (51%), Gaps = 36/374 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--- 64
           P+++ +A+ + G+ N T +Q A +   L  +D++  A+TGSGKT+AF L L + +++   
Sbjct: 282 PEML-KAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPLLNWIISLPQ 340

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              E D     + P A+ +APTR+LA Q+  E        GV +   IGG S   +   L
Sbjct: 341 LVREQD---IDNGPYAVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHSREDQSFKL 397

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
             G  +V+ TPGRL D +    + ++    +V+DEAD MLD+GF  +++ IL+  P    
Sbjct: 398 NQGCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEADRMLDMGFEPEVQRILEYIPVSNM 457

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ ++F+AT+  ++  LA+ Y +    VNI    R  
Sbjct: 458 KPDTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVERLARTYLRRPATVNIGVAGRAA 517

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ R ++++   + N +V +L        I+F + +      TK L +  ++  AL G
Sbjct: 518 DRVEQRVLMLSEKQKRNELVKLLDSMEPP-VIIFVNQKKGADVLTKSLEKMGYRASALHG 576

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             SQ  R  AL  ++D    + +ATDVA RGID+  + +VI+ +++ N E+  HR GRTG
Sbjct: 577 GKSQDLRERALSQLKDKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYTHRIGRTG 636

Query: 337 RAGRKGMSVFVIPQ 350
           RAG  G++V  + +
Sbjct: 637 RAGSSGVAVTFLTE 650


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 185/358 (51%), Gaps = 7/358 (1%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 926  FPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 984

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 985  PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLARGV 1043

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 1044 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 1103

Query: 186  SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            SAT    +  LA ++  D ++V I S++    H       ++     RD  I ++ R   
Sbjct: 1104 SATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQHMERIMD 1163

Query: 244  AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K +  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 1164 DKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 1223

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            DVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +   +  ++A  L
Sbjct: 1224 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNAKQARDL 1281


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 174/338 (51%), Gaps = 4/338 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q+  +      +D++  AQTGSGKT AF L +   LL E D       P A+
Sbjct: 201 GYKVPTPIQKVSMPVISEGRDLMACAQTGSGKTAAFLLPMICKLLDEVDNVE-IGKPQAV 259

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  E       + + +++  GG SV  +   +  G H+++ TPGRL D 
Sbjct: 260 IVSPTRELAIQIFHEARKFAFTSYLKISIVYGGTSVKYQNECITKGCHLLIATPGRLLDF 319

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTL 196
           +    +     + VVLDEAD MLD+GF D +  I+     +   + LMFSAT    I  +
Sbjct: 320 VDRTFITFEATRFVVLDEADRMLDMGFADSMRKIMQHQTMRPEHQTLMFSATFPEEIQRM 379

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A  +  + + V I       SD+      +   D+ + +++IL+  GA   IVF  T+  
Sbjct: 380 AGEFLNNYIFVAIGVVGGACSDVQQTFHELKKFDKRSKLMDILQ-EGADGTIVFVETKRG 438

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                 +L+E  F   ++ G+  Q +R  AL+  + G  +V IAT VAARG+D+ +++ V
Sbjct: 439 ADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTGHMKVLIATSVAARGLDIKNVKHV 498

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           I+ ++    ++ +HR GRTGR G +G +      N  R
Sbjct: 499 INYDMPKTVDDYVHRIGRTGRVGNRGRATSFFDPNQDR 536


>gi|154686775|ref|YP_001421936.1| YqfR [Bacillus amyloliquefaciens FZB42]
 gi|154352626|gb|ABS74705.1| YqfR [Bacillus amyloliquefaciens FZB42]
          Length = 438

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 11/346 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+       LL  
Sbjct: 10  NLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAY-------LLPI 62

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLY--AKTGVVVAVC-IGGVSVHRERRDL 121
            +R  P S  + A+  APTRELA Q+ +E   +   A+   +   C IGG    +    L
Sbjct: 63  LNRIDPGSDTVQAVITAPTRELANQIHQEALKITQGAEDEPIRTKCFIGGTDKQKSIDKL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLD+GF +D+++I    P++ +
Sbjct: 123 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDMGFLEDVDYIGSRMPEELQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++    ++  +      I++  V     D+D  +  ++ +
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFEMMSH 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF +T+ +     K L E   +V  L G L+ +ER   ++ + D      IAT
Sbjct: 243 LNPYLGIVFANTKNTADHIAKYLTEKGMRVGLLHGGLTPRERKKVMKQINDLEFTYVIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 303 DLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTI 348


>gi|321472714|gb|EFX83683.1| hypothetical protein DAPPUDRAFT_230663 [Daphnia pulex]
          Length = 429

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 171/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DV+  AQ+G+GKT  F ++L   +  +      A+   AL
Sbjct: 75  GFERPSAIQQRAILPCIMGHDVIAQAQSGTGKTATFAISLLQQIDID------ANECQAL 128

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L  G H+VVGTPGR+ D 
Sbjct: 129 VLAPTRELAQQIQKVVLALGDYMDAQCHACIGGTNVREDLRKLSQGVHVVVGTPGRVFDM 188

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L  + +K  VLDEADEML  GF+D I  +  + P + ++++ SAT+   +  +  
Sbjct: 189 INRRALKTNCIKVFVLDEADEMLSRGFKDQIYDVFKNLPAEVQVILLSATMPADVMEVTN 248

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ ++ +R+ +  E      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 249 HFMRNPIRILVKKEELTLEGIKQFYVQVEREEWKLDTLCDLYDTLSITQAVIFCNTRRKV 308

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V A+ GE+ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 309 DWLTEKMHERDFTVSAMHGEMEQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 368

Query: 318 HAELSSNPENLLH 330
           + +L ++ EN +H
Sbjct: 369 NYDLPNHRENYIH 381


>gi|301118004|ref|XP_002906730.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108079|gb|EEY66131.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 661

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%)

Query: 1   MKIFENIPQVIGEALSER---GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+  +  P +  E L+E    G+ ++T VQ A L   L  KDV V A TGSGKT++F L 
Sbjct: 1   MRFHDFKPALCPEILAETDALGFEHMTPVQAATLPLFLSNKDVCVDACTGSGKTLSFVLP 60

Query: 58  LASTL---LAENDRFSPASAPL----ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVC 108
           +   L   LA+    +P  A L    A+ I+PTRELA Q+    E  +A+  + V + + 
Sbjct: 61  IVQLLKAKLADGSITAPRHADLTKLVAMVISPTRELARQIFECAEKFFARALSTVQLLLF 120

Query: 109 IGGVSVHRERRDLQNGA----HIVVGTPGR---LCDHIRGKGLNISHLKAVVLDEADEML 161
           +GG SV  E   L  GA     +V+GTPGR   L +   G  +     + ++LDEAD +L
Sbjct: 121 VGGTSVD-EDLSLIRGAVGKCSVVIGTPGRTEDLLNRCVGSSVETREFEILILDEADTLL 179

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SD 218
           D+GF   +  IL+  PK+RR  +FSAT +  +  LA+   ++   +++   N      + 
Sbjct: 180 DMGFEVSLNKILEHLPKQRRTGLFSATQTQEVKALARAGLRNPATISVQVANNTQITPAT 239

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-----FQVVA 273
           +     LV    R +A+ + ++    +  IVF ST  SV  F++VL E       F VVA
Sbjct: 240 LQNYYCLVGHDQRLSALHHFVQAKKGEKLIVFFSTCGSVDFFSRVLEELFKGKNDFPVVA 299

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G++ Q++R+         ++ + + TDV ARGIDLPD++ ++  +   +P   +HR G
Sbjct: 300 LHGKMPQKKRTTNYDHFSALKSGLLVCTDVVARGIDLPDVDWIVQYDPPQDPNFFVHRVG 359

Query: 334 RTGRAGRKGMSVFVIPQN 351
           RT RAGR G ++  +  N
Sbjct: 360 RTARAGRSGCALSFLSSN 377


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 176/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L   DVL  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFEKCTPVQEKCIPEILNGNDVLGVAQTGTGKTAAYLLPILSKL---DDGNYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   L ++PTRELA Q+ + ++   Y   GV      GG   +R   E + LQ GA +V
Sbjct: 71  KAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSLQLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  + +MFSAT
Sbjct: 131 IATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQSCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+   + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPDKIEELAKTLLKNPKVIKLAV-SKPAEKIKQSAYVCYETQKMGIIKDIFKSDDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC ++  V +    L         +  +L Q  R   +   + G+  V +ATD+ ARGI
Sbjct: 250 IFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  +
Sbjct: 310 DIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFV 349


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G+   +++Q+  + P ++ +DV+  AQ+G+GK+    ++    +  +        
Sbjct: 33  GLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQLVDVQQRECQ--- 89

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA Q  + +  +     +    C+GG S+  + R L+NG H+V GTPG
Sbjct: 90  ---VLILSPTRELAQQTEKVILAVGDFMNIQAHACVGGKSLGEDIRKLENGVHVVSGTPG 146

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ + L   H+K ++LDEADEML   F+D I  I    P + ++++ SAT+   +
Sbjct: 147 RVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVVLVSATLPAEV 206

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCS 252
             +   +  D +RV +  +      I    V V   + + + + ++        A++FC+
Sbjct: 207 LEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCN 266

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+  V   T+ + ++ F V ++ G++ Q+ER   +   R G ARV I TDV ARG+D+  
Sbjct: 267 TKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVLITTDVWARGLDVQQ 326

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 327 VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 359


>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
 gi|158514819|sp|A3LNR6|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
 gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
          Length = 567

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 203/364 (55%), Gaps = 17/364 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L +   +F P +
Sbjct: 117 AISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSL--KFKPRN 174

Query: 74  APLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               + ++PTRELA+Q   V REL   + +T     + IGG +  +E   L  G ++++ 
Sbjct: 175 GTGVIVVSPTRELALQIFGVARELMAHHTQT---FGIVIGGANRRQEAEKLAKGVNLLIA 231

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-LMFSAT 188
           TPGRL DH++  +G    +LKA+V+DEAD +L++GF ++++ I+   PK+ R  ++FSAT
Sbjct: 232 TPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEERQSMLFSAT 291

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIV-NILRYHGAK 245
            +  +  LA+ + +   + +N+  E    + D   +  +V  SD+   ++ + L+ +  K
Sbjct: 292 QTTKVEDLARISLRPGPLYINVVPETAASTADGLEQGYVVCDSDKRFLLLFSFLKKYSKK 351

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF S+  SV  F ++L      V+ L G+  QQ+R+N      + +    + TDVAA
Sbjct: 352 KIIVFLSSCNSVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLVCTDVAA 411

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRRAERLFREA 363
           RG+D+P ++ +I  +   +P + +HR GRT R    KG S+ F+ P  +     R  + A
Sbjct: 412 RGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLTPSELGFL--RYLKAA 469

Query: 364 NVSV 367
           NV +
Sbjct: 470 NVPL 473


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 196/371 (52%), Gaps = 11/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  DALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPILNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LAK    +   + +A    + +D   +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLAKTILNNPAEIKLAVS--RPADKIIQAAYVCYENQKLGIIRSLFTDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVS 366
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   + +  F E  + 
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKSIENFLEKEIY 368

Query: 367 VVWEPAPSVEA 377
            +  PA   EA
Sbjct: 369 KIPVPAELGEA 379


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 197/375 (52%), Gaps = 15/375 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-----SPKK 179
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D      +   
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDT 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
            + LM+SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ +
Sbjct: 276 LQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 335

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A
Sbjct: 336 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 395

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++
Sbjct: 396 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 455

Query: 355 RAE--RLFREANVSV 367
             E  ++  EAN ++
Sbjct: 456 ARELIKVLEEANQAI 470


>gi|328883512|emb|CCA56751.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 503

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/341 (34%), Positives = 180/341 (52%), Gaps = 7/341 (2%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +Q A L   L  +DVL   +TGSGKT+AFGLAL   L     + +    PLAL + PTRE
Sbjct: 101 IQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL---LARTAGQLAEPRQPLALVLVPTRE 157

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV   L        + +A  +GG+ + R+   L+NG  +VV TPGRL D I      
Sbjct: 158 LAQQVTDALTPYARAVKLRLATVVGGMPIGRQANALRNGVEVVVATPGRLKDLIDRGDCR 217

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDA 204
           ++ +   VLDEAD+M D+GF   +  +L+   P+ +RML FSAT+   +  L + Y  D 
Sbjct: 218 LNQVAITVLDEADQMADMGFMPQVTALLNQVRPEGQRML-FSATLDRNVDLLVRRYLTDP 276

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V  ++       + +++  + V  +D+      I    G    I+F  T+ +V R T+ L
Sbjct: 277 VVHSVDPSQGAVTTMEHHVLHVHGADKQRLTTEIAARDG--RVIMFLDTKHAVDRLTEDL 334

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
                +  AL G  SQ +R+  L   + G   V +AT+VAARGI + +L+LV++ +  ++
Sbjct: 335 LRCGVRAAALHGGKSQPQRTRTLARFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPTD 394

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
            ++ LHR GRT RAG  G  V ++  N +R   RL   A +
Sbjct: 395 HKDYLHRGGRTARAGESGSVVTLVTANQRRDMTRLMAAAGI 435


>gi|302900629|ref|XP_003048299.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729232|gb|EEU42586.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 590

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 196/345 (56%), Gaps = 15/345 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF + +   L A   RF P 
Sbjct: 127 KAIKEMGFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVVEMLSAL--RFKPR 184

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 185 NGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLSKGVNLII 241

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188
            TPGRL DH++       +LK++V+DEAD +L++GF D++  I+   PK+ R+ ++FSAT
Sbjct: 242 ATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKILPKEDRQTMLFSAT 301

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGA 244
            +  +  LA+ + +   + +N+  E +Q S ++   +  ++  +DR   ++ + L+ +  
Sbjct: 302 QTTKVEDLARISLRPGPLYINV-DEEKQFSTVEGLEQGYVICEADRRFLLLFSFLKRNIK 360

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + +    I TDVA
Sbjct: 361 KKVIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVA 420

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           ARG+D+P ++ ++  +   +P + +HR GRT R +  KG S+  +
Sbjct: 421 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGSNSKGRSLMFL 465


>gi|119477648|ref|ZP_01617798.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449151|gb|EAW30391.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 441

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 187/352 (53%), Gaps = 2/352 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   T++QE  +   L  +D+L ++QTG+GKT +F L +   L  E  R +  
Sbjct: 14  QAVEELGYTKPTAIQEQTIPTILAGRDLLAASQTGTGKTASFILPVLQKLTGERKRRAKR 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              L L   PTRELA+QV   +        +   V +GGV    +++ L +G  I+V TP
Sbjct: 74  LRALVLV--PTRELAIQVENTIHQYGKYLSLRSMVMVGGVDAAPQKQGLIDGLDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + L    L+ ++LDEAD MLD+GF  DI  I++  P +R+ L+FSAT+S  
Sbjct: 132 GRLLDMAHQRALYFDELEVLILDEADRMLDMGFIGDINKIIERLPTQRQNLLFSATLSDE 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LAK    D + ++I + N     I    + V    +   + ++++ +    A++F  
Sbjct: 192 IRLLAKTAINDPIEISINATNATAPKISQWLITVDKDSKSALLSHLIKENQWTQALIFIR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++    L +   +  A+    SQ  R+  L   + G   + +AT +AARGID+ D
Sbjct: 252 TKHGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGNISLLVATGIAARGIDIDD 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           L+ V++ +L  + ++ +HR GRTGRAG  G +V ++ ++  +R   + R  N
Sbjct: 312 LDRVVNYDLPDDDDDYIHRIGRTGRAGAIGEAVSLVSRDDFKRLCAIERRLN 363


>gi|289434733|ref|YP_003464605.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170977|emb|CBH27519.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 28  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 85  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 142 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     D+ + + N+L       AI
Sbjct: 202 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYLAI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 262 VFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 322 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 358


>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|74656492|sp|Q5ACK7|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
          Length = 613

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 193/350 (55%), Gaps = 13/350 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + ++E  +   T +Q A +   L  KD++  AQTGSGKT A+ + +   LL     + P+
Sbjct: 143 KGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLL-----YKPS 197

Query: 73  SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           ++   + + PTRELA+QV   G++L   +    + + + +GG+++ ++   L+    IV+
Sbjct: 198 TSTKVIILTPTRELALQVYEFGKKLS--HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVI 255

Query: 130 GTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSA 187
            TPGRL DHIR     ++  ++ +V+DEAD ML+ GF+D++  IL   PK KR+ L+FSA
Sbjct: 256 ATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTLLFSA 315

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKN 246
           T++  I  L +   +  VR+ I       S +  + V +   D+   A++  L    +  
Sbjct: 316 TMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLKGVSSR 375

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF + + +  R   VL     +V  L G L+Q++R   ++  +     V I TD+AAR
Sbjct: 376 VVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAAR 435

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+P +ELVI+ ++    E  LHR GRT RAGR G S+  + ++ Q RA
Sbjct: 436 GLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA 485


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/333 (32%), Positives = 171/333 (51%), Gaps = 11/333 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +DVL  A+TGSGKT AF + +    L E D       P A+ 
Sbjct: 66  YDKPTPIQAQAIPIILSGRDVLGCAETGSGKTAAFSIPMIQHCL-EQDPIKRGDGPFAIV 124

Query: 80  IAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +APTRELA Q+ +E + +  +  G    + +GG ++  +R DL+ G  + V TPGRL DH
Sbjct: 125 MAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQRSDLRQGVEVCVATPGRLIDH 184

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +     N+  +  V+LDEAD MLD+GF   I  ++ + P   + L+FSAT+   + +LA 
Sbjct: 185 LHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLPTPHQTLLFSATMPAEVESLAA 244

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---------AIV 249
           +Y    V+V + + +   +++      +  + + + +  +L    A+           +V
Sbjct: 245 DYLNKPVKVKVGAVSVPTANVAQHLEKLVDAQKVDRLCELLLEEKAEAEKFGGSLPMTVV 304

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +A      ++L        A  G  SQQER  AL   ++G+  V  ATDVAARG+D
Sbjct: 305 FVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALSDYKNGKCSVLCATDVAARGLD 364

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  V++ ++    E+ +HR GRTGRAG  G
Sbjct: 365 VKGIAHVVNLDMPRMFEDYVHRVGRTGRAGMTG 397


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 185/361 (51%), Gaps = 29/361 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLLAENDRFSP 71
           A+S  GY   T +Q   +   L+ +D++  A+TGSGKT +F + +    T +      + 
Sbjct: 175 AISRIGYKEPTPIQRQAIPMGLQNRDIIGIAETGSGKTASFVIPMLKFITEMPPLTEINS 234

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  P AL +APTRELA Q+  E      + G +    +GG +V  +  +L+NGAHIV+ T
Sbjct: 235 SQGPYALILAPTRELAQQIESETSKFAREMGFICVSIVGGHAVEGQAFNLRNGAHIVIAT 294

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK------------ 179
           PGRL D +  + L +S    VV+DEAD M+D+GF  D++FILD+ P              
Sbjct: 295 PGRLRDCLEQRILVLSQCTYVVMDEADRMVDMGFEPDLKFILDAMPVSNIKPDSDESENV 354

Query: 180 -------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
                        R+ +MFSAT+  A+  LAK Y +    V I    +    I+ R  ++
Sbjct: 355 QLLRELTGKVTPFRQTVMFSATMPVAVERLAKAYLRRPATVTIGIAGQVVDRIEQRVEMI 414

Query: 227 ALSDRD-NAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
               R  + +  IL     +   IVF + +       + L     +   L G  SQ++R 
Sbjct: 415 NDDGRKLSRLQEILTSRQFEPPMIVFVNQKKGCEVIARALDRLGLKSTTLHGGKSQEQRE 474

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            +L  ++ G   + +ATDVA RGID+ ++ +VI+ +++ + E+  HR GRTGRAG+KG +
Sbjct: 475 ASLLGLKQGTKDILVATDVAGRGIDVKNVSVVINFDMAKSIEDYTHRIGRTGRAGKKGTA 534

Query: 345 V 345
           +
Sbjct: 535 I 535


>gi|228907868|ref|ZP_04071720.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
 gi|228851763|gb|EEM96565.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
          Length = 389

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 191/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 192/370 (51%), Gaps = 9/370 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   N    P 
Sbjct: 14  DALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNKLSEGN---HPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  GV   ++++ L  GA +V+
Sbjct: 71  DAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKKGLMLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     +   V +A  +R    I   A +   + +   I ++      +  I+
Sbjct: 191 PAKIQQLANTILNNPAEVKLAV-SRPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVII 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S++  V   TK L      V  +  +L Q +R   +   + GR  + +ATD+ ARGID
Sbjct: 250 FASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVNILVATDIVARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSV 367
           + D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   +++  F E  +  
Sbjct: 310 IDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNFKQIENFLEKEIYK 369

Query: 368 VWEPAPSVEA 377
           +  P    EA
Sbjct: 370 IAVPEELGEA 379


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 182/367 (49%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L++ G+V  T +Q       +  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 123 FPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAF-LLPAIVHINAQ 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELAVQ+  E       + +    C GGV    + RDL  G  
Sbjct: 182 PYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARDLSEGVE 241

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I       R+ L++S
Sbjct: 242 ICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDRQTLLWS 301

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT    +  LA++  +++ V +N+ +   +  H+   Y  V+     RD     + R   
Sbjct: 302 ATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKQLLERVMD 361

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+      T+ L    +  + + G+  Q+ER   L   + G++ + IATDV
Sbjct: 362 GSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPIMIATDV 421

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           A+RG+D+ D+  V++ +     E+ +HR GRTGRAG KG +      +   M R   ++ 
Sbjct: 422 ASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKIKMARGLVQIL 481

Query: 361 REANVSV 367
           REAN +V
Sbjct: 482 REANQTV 488


>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 601

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 178/341 (52%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLLAEND 67
           I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +    ST  +  +
Sbjct: 12  ILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHKLSTGASATN 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F       AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  I
Sbjct: 72  KFG-GIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQISKLKKGVDI 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   L++S ++ ++LDEAD MLD+GF  D++ IL   PK+++ L+FSA
Sbjct: 131 LVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPKEKQSLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA    K+   + +   N     I      V    +   + +I+  +     
Sbjct: 191 TFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHIINENKWSQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L ++  + +AL G  SQ  R+ AL   + G  R  +ATD+AARG
Sbjct: 251 LVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V  +
Sbjct: 311 IDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFV 351


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|110638059|ref|YP_678268.1| DEAD box-related helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280740|gb|ABG58926.1| DEAD box-related helicase (ATP-dependent RNA helicase) [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 437

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 179/322 (55%), Gaps = 9/322 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++LS  G+   T +Q   +   +   D++  AQTG+GKT A+ L +   ++  N      
Sbjct: 14  DSLSSMGFNKPTPIQTEAIPVIMSNSDLVACAQTGTGKTAAYMLPILHKIIESN-----T 68

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGG--VSVHRERRDLQNGAHIVV 129
            +   L + PTRELA+Q+ +++E + Y      +AV  GG   +  ++R+ L +GA+IV+
Sbjct: 69  DSLDTLVLVPTRELAIQIDQQIEGFSYFINVSSIAVYGGGDGATWDQQRKALTDGANIVI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL   ++    N+  +K +VLDEAD MLD+GF DDI  ++   P +R+ +MFSAT+
Sbjct: 129 ATPGRLLAQLQSGTANLKQIKHLVLDEADRMLDMGFYDDIVRVISYLPTERQTIMFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  LA    KD  ++NIA  ++    I  +A LV    ++  I +IL      + I+
Sbjct: 189 PTKMRALANKLMKDPQQINIAI-SKPAEGILQQAYLVYEEQKNKLIKHILSSGNFNSIII 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST+  V +  + L+   F +     +L Q+ER   ++  +  + ++ I TD+ +RGID
Sbjct: 248 FSSTKEHVKKLERDLSNMGFSLKGFHSDLEQEEREEIMRAFKSRQLQMLIGTDILSRGID 307

Query: 310 LPDLELVIHAELSSNPENLLHR 331
           +  ++LVI+AE+  + EN +HR
Sbjct: 308 IDGIDLVINAEVPGDAENYIHR 329


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 182/349 (52%), Gaps = 7/349 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+V  T +Q       L  +DV+  A+TGSGKT+ + L  A   +      +P   P+ 
Sbjct: 7   QGFVKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP-AIVHINAQPLLAPGDGPIV 65

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G  + + TPGRL 
Sbjct: 66  LVLAPTRELAVQIQAEIT-KFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATPGRLI 124

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+SAT    +  L
Sbjct: 125 DMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKDVRQL 184

Query: 197 AKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCS 252
           A ++ +D ++V I S++    H       V+     RD  I ++ R    K +  ++F  
Sbjct: 185 ANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVLIFTG 244

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +ATDVA+RGID+ D
Sbjct: 245 TKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVASRGIDVRD 304

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  V++ +  +N E+ +HR GRTGRAG  G ++ +      ++A  L +
Sbjct: 305 ITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITMFTTENAKQARDLVK 353


>gi|229161125|ref|ZP_04289112.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
 gi|228622221|gb|EEK79060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
          Length = 389

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 191/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++    AV   +A   R  S   +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDL---AVEPQVARVTRAESKSLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
           'morsitans']
 gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/339 (34%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S++G+   T++Q   +   +  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  AISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  + + L A T + +A   GGV+             IVV T G
Sbjct: 76  PPRVLIVTPTRELAMQVAEQAKQLAAHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  D+E I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFALDVEQIAAETRWRKQTLLFSATLEGNA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +   A     D V ++ +   R+   I    YRA    L+ +   +  +L+      AIV
Sbjct: 196 VKDFAGRLLNDPVEIDASPSRRERKKIVQWYYRA--DDLTHKTALLCKLLKQPEVSKAIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  +      L +       L GEL Q +R+ A++ + DGR  V +ATDVAARG+D
Sbjct: 254 FVRKRERLHEVVGWLRDSGIPSCYLEGELVQAKRNEAIKRISDGRMNVLVATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  VI+ +L +  +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IEDISHVINFDLPATADVYLHRIGRTARAGRKGCAISLV 352


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 133 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 192 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 250

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 251 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 310

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 311 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 370

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 371 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 430

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 431 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 490

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 491 SVLREANQAI 500


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++   +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           +        P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 HPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|157693014|ref|YP_001487476.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157681772|gb|ABV62916.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 439

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 186/353 (52%), Gaps = 34/353 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E G+   T +Q+ I+   L+ + V+  +QTG+GKT A+ L L  ++        
Sbjct: 15  IIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHSI-------D 67

Query: 71  PASAPLALAI-APTRELAVQVGRELEWLYAKTG----VVVAVCIGGVSVHRERRDLQNGA 125
           P+   + + I APTRELA Q+ +E + +         +   + IGG    +  + L+N  
Sbjct: 68  PSKEHVQVVITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSIQKLKNQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + LN+    ++V+DEAD MLD+GF +D++ I    P++ +ML+F
Sbjct: 128 HLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVN-----IASENRQHSDIDYRAVLVALSDRDN------A 234
           SATI   +    K Y  +    +     I +EN QH       +LV    RD        
Sbjct: 188 SATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQH-------ILVPSKQRDKLKLLHEM 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+  Y G    I+F +T+ +V      L E   +V  L G L+ +ER   ++ + D  
Sbjct: 241 VTNVQPYLG----IIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
               +A+D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G+++ +
Sbjct: 297 FTYIVASDLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTI 349


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|294633723|ref|ZP_06712281.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292830365|gb|EFF88716.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 498

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 191/364 (52%), Gaps = 11/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + +  +
Sbjct: 75  DMPRELLAALGSQGLTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARVAGQ 134

Query: 66  NDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                PA+A  PL L + PTRELA QV   L        + +A  +GG+S  R+   L++
Sbjct: 135 -----PAAARQPLGLILVPTRELAQQVSDALAPYARSVKLRLATVVGGMSTGRQAGVLRS 189

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRM 182
           GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD   P  +RM
Sbjct: 190 GAEVVVATPGRLKDLIDRGDCRLDQVCVTVLDEADQMADMGFMPQVTALLDQVRPGGQRM 249

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A   I    
Sbjct: 250 L-FSATLDRDVDRLVRRYLSDPVVHSVDPPAGAVTTMEHHVLHVHGADKRAATTEIAARD 308

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G    I+F  T  +V R T+ L     +  AL G  +Q +R+  L   + G   V +AT+
Sbjct: 309 G--RVIMFLDTEHAVDRLTEHLLSSGVRAAALHGGKTQPQRTRTLAQFKTGHVSVLVATN 366

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI + +L+LV++ +  ++ ++ LHR  RT RAG  G  V ++  N +R   R+   
Sbjct: 367 VAARGIHVDNLDLVVNVDPPTDHKDYLHRGDRTARAGEPGSVVTLVTPNQRRGMTRVMAA 426

Query: 363 ANVS 366
           A ++
Sbjct: 427 AGIT 430


>gi|209762788|gb|ACI79706.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320646171|gb|EFX15111.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str.
           493-89]
 gi|320651466|gb|EFX19862.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str. H
           2687]
          Length = 444

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 180/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  TLQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/351 (33%), Positives = 179/351 (50%), Gaps = 8/351 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L ++ +   T +Q       L   D++  AQTGSGKT+++ L  A   +   
Sbjct: 68  LPDYVQLILRQQNWTQPTPIQAQGWPIALSGLDIVGIAQTGSGKTLSYILP-AIIHINHQ 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            R      P+ L + PTRELA QV  ++  L+  T  V  VC+ GG     + RDLQ GA
Sbjct: 127 PRLQYGDGPVCLVLVPTRELAQQVA-QVAQLFGNTSSVRNVCVYGGAPKGPQIRDLQRGA 185

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  IL+     R+ LM+
Sbjct: 186 EICIATPGRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPDRQTLMW 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHG 243
           SAT    +  LA+ +  D +++NI S     +    + V V   +   + +N L     G
Sbjct: 246 SATWPKEVKQLAETFLTDYIQINIGSTQLTANHSILQIVDVCSEEEKESKLNRLLQEIMG 305

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             N   +VF  T+   +     +    +    + G+ SQ+ER + L+  R+GR  + +AT
Sbjct: 306 ESNNKTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFRNGRIPILVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           DVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG  G +     P+N
Sbjct: 366 DVAARGLDVDDVKFVVNFDYPNCSEDYVHRIGRTGRAGHTGTAYTLFTPKN 416


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 195/364 (53%), Gaps = 15/364 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 246 LPTHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 304

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G
Sbjct: 305 PPIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQVRDLERG 364

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 365 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 424

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNI 238
           +SAT    +  LA ++  D +++NI S N   ++ + R ++   ++ +        +  I
Sbjct: 425 WSATWPKEVQALAGDFLNDYIQINIGSMNLS-ANHNIRQIVEICNENEKPQRMMRLLKEI 483

Query: 239 LRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              + A NA    I+F  T+  V    +++    +   ++ G+ SQ ER + L+  R+G+
Sbjct: 484 TPSNNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDFRNGK 543

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           + + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N +
Sbjct: 544 SNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAK 603

Query: 354 RRAE 357
           +  E
Sbjct: 604 QARE 607


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 196/371 (52%), Gaps = 11/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  DALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPILNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LAK    +   + +A    + +D   +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLAKTILNNPAEIKLAVS--RPADKIIQAAYVCYENQKLGIIRSLFTDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVS 366
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   + +  F E  + 
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNFKSIENFLEKEIY 368

Query: 367 VVWEPAPSVEA 377
            +  PA   EA
Sbjct: 369 KIPVPAELGEA 379


>gi|323509827|dbj|BAJ77806.1| cgd6_4860 [Cryptosporidium parvum]
          Length = 390

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 184/361 (50%), Gaps = 29/361 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           E L  RG   L  +Q         +KDVL  A+TG+GKT+AF L +   LL +  +F P 
Sbjct: 27  EILRSRGIERLFPIQAQSFESIYGKKDVLGKAKTGTGKTLAFVLPVIERLLKKG-KFDPN 85

Query: 72  --ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                PL L + PTRELA QV  E E +  K    V    GG   + + ++++ G  IVV
Sbjct: 86  KHGRRPLVLVLLPTRELAQQVSNEFELMKGKDRYKVCSVYGGSPEYPQIQEIKKGVDIVV 145

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------------SSP 177
           G PGR+ D I    LN+S +  + LDEAD+ML++GF++ ++ I+D            S  
Sbjct: 146 GCPGRVLDFIERGILNVSKISVLTLDEADKMLEMGFKETVDKIIDCVRKETGDGETHSRQ 205

Query: 178 KKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIA---------SENRQHSDIDYRAVLVA 227
            K ++L+FSAT+ P +   L +    D V V++           E    S I + A+  A
Sbjct: 206 NKFQVLLFSATVPPWVKNILTEIMSSDTVTVDVTHISIHGEEEDEAAARSRIRHLAIQCA 265

Query: 228 LSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              R   + +I+  +   N   I+F  T+ + +    + +E       L G++ Q +R  
Sbjct: 266 YPQRTGLLGDIITMYAGINGKCIIFTETKQTANEIA-MRSEISKMCQVLHGDIQQNQREI 324

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ALQ  ++GR R  +ATDVAARG+ + D+ +VI      + +  +HRSGRTGRAG+ G ++
Sbjct: 325 ALQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRSGRTGRAGKFGTAI 384

Query: 346 F 346
            
Sbjct: 385 M 385


>gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica]
          Length = 428

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P+VI EAL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHYLLTHPI 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 77  AKGRQTNQPRALIMAPTRELAVQIYSDAEDLAQTTGLKMGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P   +R  L+
Sbjct: 137 ILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPSANERMNLL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA      A  V +    +    I       +  ++   +  +L     
Sbjct: 197 FSATLSYRVRELAFEQMNHAEYVEVEPLQKTGHRIREELFYPSNEEKMRLLQTLLEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G+++Q++R   L+   +G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNIDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 80  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 138

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 139 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 197

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 198 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 257

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 258 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 317

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 318 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 377

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 378 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 437

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 438 SVLREANQAI 447


>gi|303277565|ref|XP_003058076.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460733|gb|EEH58027.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 748

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 15/341 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + +   L  +G  +L  +Q       L  KD++  A+TG GKT+AF L +   +  E
Sbjct: 133 NISREVCARLETKGITSLYGIQAQTFQHVLDGKDIVARAKTGCGKTLAFVLPIVEAINRE 192

Query: 66  -----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
                N R +   AP+   +APTRELA QV  + + +      + A+C+ GG     ++R
Sbjct: 193 HPVPANGRRAQGRAPVVALLAPTRELAKQVHADFQHI-GHAFKLTAICVYGGAPYGDQQR 251

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
            L+ G  IV+GTPGR+ DH+  K L+   L+  VLDEADEML++GF +DIE IL+ +   
Sbjct: 252 LLRAGCDIVIGTPGRMKDHLERKTLSFDKLRFRVLDEADEMLNMGFVEDIEMILNHAKDN 311

Query: 178 KKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNA 234
           +K + L+FSAT+   +  +++ + Q D V V++  + +Q +      +L+    S+R   
Sbjct: 312 EKLQTLLFSATLPKWVADISRRFLQPDHVTVDLVGDEKQKASAAVTHMLLNCQWSERTEL 371

Query: 235 IVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMR 291
           + +++R    G    IVFC T+       + L + L +   AL G+++Q +R   L   R
Sbjct: 372 VCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQAQREVVLAGFR 431

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
             + +  +ATDVAARG+D+  +ELV+  E    PE  +HRS
Sbjct: 432 ANKFQTLVATDVAARGLDISGVELVVQCEPPKEPETYIHRS 472


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 195/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 168 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 226

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y++   + + CI GG     + RDL+ G
Sbjct: 227 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG 285

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 286 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 345

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++    
Sbjct: 346 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 405

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 406 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 465

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 466 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 525

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 526 SVLREANQAI 535


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|14517482|gb|AAK62631.1| AT5g62190/mmi9_10 [Arabidopsis thaliana]
          Length = 671

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 200/384 (52%), Gaps = 19/384 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           IP  + E L   G   L  +Q +  +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 103 IPAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162

Query: 64  AENDR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           A++ R      +P  L + PTRELA QV  + +      G+      GG S   +   L+
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDEYGGSLGLSSCCLYGGDSYPVQEGKLK 222

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPK 178
            G  IVVGTPGR+ DHI  + L+ S+L+  VLDEADEML +GF +D+E IL    DS+  
Sbjct: 223 RGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDST-- 280

Query: 179 KRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--I 235
           K + L+FSAT+   +  ++  + ++D   +++   ++  +    R + +  +    A  I
Sbjct: 281 KVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLI 340

Query: 236 VNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +I+  Y      I+F  T+  VS  + +L        AL GE+ Q +R   L   R+G+
Sbjct: 341 PDIISCYSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGK 396

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +AT+VAARG+D+ D++L+I  E     E  +HRSGRTGRAG  G++V  +  + + 
Sbjct: 397 FATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV-TLYDSRKS 455

Query: 355 RAERLFREANVSVVWEPAPSVEAI 378
              R+ +EA +      AP  + I
Sbjct: 456 SVSRIEKEAGIKFEHLAAPQPDEI 479


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 292 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 351

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 352 GITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 411

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 412 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 471

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   ++ 
Sbjct: 472 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKLLE 531

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 532 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPV 591

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 592 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 639


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/441 (29%), Positives = 210/441 (47%), Gaps = 21/441 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 294 NLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 353

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG       R + 
Sbjct: 354 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIV 413

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+G   +++ ++      S +
Sbjct: 414 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGVGPEMKKLISCPGMPSKE 473

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 474 QRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKLVE 533

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 534 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 593

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F   ++    A
Sbjct: 594 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTESDNHLA 653

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L     V V+ +    V A  E  A      P F +S +G        + A  D  K 
Sbjct: 654 QPL-----VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRG-------AVFASVDTRKN 701

Query: 417 AAGFLRIHRAGLCAPEEITPV 437
             G   ++ AG+ + +   PV
Sbjct: 702 FQGKNTLNTAGISSAQAPNPV 722


>gi|256786437|ref|ZP_05524868.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289770328|ref|ZP_06529706.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289700527|gb|EFD67956.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
          Length = 728

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 187/363 (51%), Gaps = 5/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   
Sbjct: 55  GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGG 114

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 115 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGV 171

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 172 DVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLF 231

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL   Y KD     + +     + + +  ++V   D+      I    G  
Sbjct: 232 SATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAIASRKG-- 289

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 290 RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 349

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 350 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 409

Query: 366 SVV 368
              
Sbjct: 410 DAT 412


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 180/358 (50%), Gaps = 5/358 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++  V+ EA+ E GY   T +Q   +   L  KD+L SA TG+GKT +F +     LL  
Sbjct: 9   DLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIPAIQYLLDF 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  PA     L + PTRELA+QV    + L   T + VA   GGV+       L   
Sbjct: 69  PRKKAGPARI---LVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHADTLAQT 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL ++I  +  +   ++ +VLDEAD MLDLGF   ++ +      +++ L+
Sbjct: 126 QDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRWRKQTLL 185

Query: 185 FSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT+    +     +  K    ++     R+   I         ++   A++  +    
Sbjct: 186 FSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEHKLALLKHILTEQ 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+  IVF  TR  +    + L         + GE+ Q  R+NA+   RDG   + +ATDV
Sbjct: 246 AQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGSVNILLATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           AARGIDLPD+  VI+ +L  + +  LHR GRT RAG+KG ++ ++  + Q   +R+ R
Sbjct: 306 AARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMDRVGR 363


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 157 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 215

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 216 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 274

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 275 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 334

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 335 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 394

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 395 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 454

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 455 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 514

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 515 SVLREANQAI 524


>gi|326329874|ref|ZP_08196191.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
           Broad-1]
 gi|325952341|gb|EGD44364.1| putative ATP-dependent RNA helicase [Nocardioidaceae bacterium
           Broad-1]
          Length = 452

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 180/361 (49%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L   G  + T +Q A L   L  +DVL   +TGSGKT AF L L + L   
Sbjct: 10  GVPADLTAVLDHHGITSPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVARLAGG 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P AL +APTREL  Q+   L  L  + G+ V    GGV  + +   L+ GA
Sbjct: 70  PK--AKAGKPRALVLAPTRELVRQIEESLRPLATEAGLSVQTVFGGVGQNPQVVGLRKGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+  PGRL D I  +  ++S ++  VLDEAD M DLGF   +  +L  +PK  + L+F
Sbjct: 128 DVVLACPGRLEDLIGQRHADLSSIEVTVLDEADHMADLGFLPAVRRLLAMTPKGSQRLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K +    V     S     +++++   ++ LS R++ I  +     A 
Sbjct: 188 SATLDKGINVLVKQFLSAPVVHEADSAQSPVAEMEHH--VLHLSAREHRIPVLADLAAAP 245

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+       + L       V L G+LSQ  R   L+    G+A   +ATD+A
Sbjct: 246 GRTVVFTRTKHGAKGVARQLGRAGIPAVELHGDLSQNARVRNLEAFHSGKATTLVATDIA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + D+ LV+HA+  +  +  LHRSGRT RAG  G  V ++  +  +    L R A 
Sbjct: 306 ARGIHVDDVTLVVHADPPAEHKAYLHRSGRTARAGASGTVVTLMLPDQVKDVRTLTRAAG 365

Query: 365 V 365
           +
Sbjct: 366 I 366


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 178/342 (52%), Gaps = 18/342 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ++ L    + +D++  AQTGSGKT AF L + S +L +     PAS      
Sbjct: 252 YTKPTPVQKSALPIIFKNRDLMACAQTGSGKTAAFLLPIISGILLDGAPEPPASYKPGVP 311

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              AP AL +APTRELA Q+  E       + +   V  GG  V  +  +L  G  I+V 
Sbjct: 312 RAAAPRALVLAPTRELAQQIYNEANKFSYGSPIQSVVIYGGAEVFNQINELDKGVDILVA 371

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           T GRL D +    + +S +K +VLDEAD MLD+GF   I  I+        + R+ LMFS
Sbjct: 372 TTGRLVDLLLRGRVTLSKIKYLVLDEADRMLDMGFEPQIRQIIGDFDMPGSRDRQTLMFS 431

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---LRYHG 243
           AT    I  LA ++  + + + +        +I  R   V+  ++++ +++    L   G
Sbjct: 432 ATFPKQIQALASDFLSNYIFLKVGVVGTTQ-NITQRIEYVSEEEKNSYLLDYISGLNIDG 490

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   ++F  T+ S    T  L    F    + G+L+Q ER NAL      +    +ATD+
Sbjct: 491 AL-TLIFVETKRSCDTLTFFLNNRGFPATCIHGDLTQSERENALHSFSSFQTPFLVATDI 549

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+RG+ +P++ +VI+ +L ++    +HR GRTGRAG+KG+S+
Sbjct: 550 ASRGLHIPNVMVVINYDLPTDVHIYVHRIGRTGRAGKKGLSI 591


>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 439

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 185/352 (52%), Gaps = 15/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R  V   ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEKVTRGIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFV 352


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 184/354 (51%), Gaps = 21/354 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GE L++      YV  T +Q   +   +  +D++  AQTGSGKT AF   +   +L   
Sbjct: 428 LGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICGIL--R 485

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++ S   A    P AL ++PTREL+ Q+  E +    KTG+ V V  GG  + ++ R+L+
Sbjct: 486 NQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLE 545

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G  I+V TPGRL D I    +++  +K + LDEAD MLD+GF   I  I++      P 
Sbjct: 546 RGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 605

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++  + + +++         I  R   V  +D+   ++++
Sbjct: 606 ARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDL 665

Query: 239 LRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L+              +VF  T+  V    + L  +     A+ G+  Q ER  AL+  +
Sbjct: 666 LQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFK 725

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            G   + +ATDVAARG+D+P +  VI+ +L    ++ +HR GRTGRAG+ G++ 
Sbjct: 726 SGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLAT 779


>gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 467

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L   + A+  +  
Sbjct: 12  IVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQ-MFADAPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
           P     A+ + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  PKRV-RAIILTPTRELAVQVEENIRQ-YAKYLPLTSMAMYGGVDAAPQKKKLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPTQRQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ V + I+        ID     V    +   + ++++      A++
Sbjct: 189 SKQVRVLAKTAVENPVEIEISRNTATAPQIDQWLTTVDKDKKSALLSHLIKEQAWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRDISAEAFHSGRSQAVREQLLADFKSGKLAFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKD 350


>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14]
 gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
           S14]
          Length = 416

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/349 (34%), Positives = 176/349 (50%), Gaps = 3/349 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +   L  +  R  P  
Sbjct: 16  AIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQHL-QDFPRKRPGP 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + V    GG+S       L     IVV TPG
Sbjct: 75  ARI-LILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHAEMLGKTQDIVVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      +R+ L+FSAT+    
Sbjct: 134 RLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERLNHECRWRRQSLLFSATLEGKG 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +   ++    + V VN     R+   I    +     D   A++  +    A+  I+F  
Sbjct: 194 VREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLALLENIIKEQAERTIIFVK 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  +      L         + GE++Q  R+N +   RDG   V IATDVAARGIDLPD
Sbjct: 254 TRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNVLIATDVAARGIDLPD 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  VI+ +L    E  +HR GRT RAG+KG ++ ++  + Q   ER+ R
Sbjct: 314 VSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQSMIERISR 362


>gi|302552490|ref|ZP_07304832.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470108|gb|EFL33201.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 721

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 187/360 (51%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L   
Sbjct: 126 GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARLAGG 185

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 186 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVVGLKMKVVCGGTSMGNQIYALERGV 242

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 243 DILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLF 302

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G  
Sbjct: 303 SATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIVKPKDKAPVTAAIASRKG-- 360

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L+  + G     +ATDVAA
Sbjct: 361 RTIIFVRTQLGADRIAEQLCDSGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAA 420

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 421 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 480


>gi|323335994|gb|EGA77270.1| Has1p [Saccharomyces cerevisiae Vin13]
          Length = 505

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 195/350 (55%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +TSVQ   + P L   DVL +A+TGSGKT+AF   + +  L  + +F P 
Sbjct: 55  KAIEKMGFTTMTSVQARTIPPLLAGXDVLGAAKTGSGKTLAF--LIPAIELLHSLKFKPR 112

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 113 NGTGIIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLMKGVNMLI 169

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+++DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 170 ATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSA 229

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+  E  N     ++   V+     R   + + L+ +  
Sbjct: 230 TQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQK 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + I TDVA
Sbjct: 290 KKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVA 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 350 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 399


>gi|319440997|ref|ZP_07990153.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 523

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/365 (33%), Positives = 179/365 (49%), Gaps = 5/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+ +G V+   +Q A +   L  +DVL    TGSGKT  FGL + S L+  
Sbjct: 139 GLPYPVVNELTHQGLVHPFPIQAAAIPDGLAGRDVLGRGPTGSGKTFTFGLPVISRLVGG 198

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   S    P A  + PTRELA QV   L       G  V   +GGV++ R    L    
Sbjct: 199 S---SKPGHPRAAVLVPTRELAQQVAERLRPFAEAVGQRVIEVVGGVNIKRNFTALARPV 255

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGR  D I  K L +  ++ V LDEAD+M D+GF   +  +LD  P   + L F
Sbjct: 256 DILVATPGRAEDLIGQKALFLDQVEIVALDEADQMADMGFLPQVRRLLDRMPSDAQHLFF 315

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L   Y  D V  +      +   +D+   +V      N +V  L     K
Sbjct: 316 SATLDGDIKVLIDQYMNDPVTHSTGEVAAKVDSMDHFLGVVPDKPFRNEVVLALGRASTK 375

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R  K L       V L G+  Q  R+ A++   DG A V +ATD+AA
Sbjct: 376 T-IMFMRTKHTVDRQVKKLVRDGTPAVGLHGDKGQGARTRAIREFTDGTATVLVATDIAA 434

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  ++LV+H +  +  +  +HR+GRT RAG KG  + +   + ++    + R+A V
Sbjct: 435 RGIDIKGVDLVVHIDPPAEHKAYVHRAGRTARAGEKGTVLTLTLADQKKDTVAMMRKAGV 494

Query: 366 SVV-W 369
           +   W
Sbjct: 495 TPTEW 499


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 412 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 470

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 471 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 530

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 531 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 590

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 591 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 650

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 651 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 710

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 711 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 770

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 771 VP-PDLEKL 778


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 183/342 (53%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF LA     L  + 
Sbjct: 18  PEVLA-GLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAF-LAATFNYLLTHP 75

Query: 68  RFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              P   + P A+ +APTRELAVQ+  + E + A TG+ + +  GG    ++   L+ G 
Sbjct: 76  LTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLAVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+    P   +R  +
Sbjct: 136 DILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V I  E      I       +  D+   +++++    
Sbjct: 196 LFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 316 AARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSI 357


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 206/440 (46%), Gaps = 20/440 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +      +D++  AQTGSGKT AF L + + ++ +
Sbjct: 296 NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRD 355

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 356 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 415

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 416 QGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 475

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 535

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 536 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 595

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G            RA 
Sbjct: 596 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG------------RAI 643

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             F   + S + +P   V +  ++D    L++  F     G        + A  D  K  
Sbjct: 644 SFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTRKNY 703

Query: 418 AGFLRIHRAGLCAPEEITPV 437
            G   ++ AG  + +   PV
Sbjct: 704 PGKSSLNTAGFSSTQAPNPV 723


>gi|119775581|ref|YP_928321.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768081|gb|ABM00652.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 447

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 174/347 (50%), Gaps = 17/347 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + GY   T +Q   +   L  +D++  AQTGSGKT AF L +   L  +  R    
Sbjct: 14  QTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPILKQLSDKGLR---- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELAVQV        A  G+      GGV++  +R+ L  G  I+V TP
Sbjct: 70  GGIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALAAGVDILVATP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML------MFS 186
           GRL D     GL+++ +  +VLDEAD MLD+GF  DIE       K RR L      MFS
Sbjct: 130 GRLLDLTGQFGLSLASVGTLVLDEADRMLDMGFAPDIE-------KIRRQLGPHQSAMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           A+ +     LA+ +  +AV +      R    +     ++        +  ++     + 
Sbjct: 183 ASFAQRERELAERWLSNAVSLAAKDTGRIPQQLALEVFMLDKPRWAEFVAELVGKRNWRQ 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF S+R   +     LA    Q  A  GE +Q  R   L   + G+ R+ +ATDVAAR
Sbjct: 243 ALVFVSSREESNTLVAELALDGLQAAAFHGEKTQGARRRGLDEFKSGKLRLLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           G+D+ DL +VI   L    E+L+HR GR+ RAGR+G++V V+   M+
Sbjct: 303 GLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVIVLSPEMR 349


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 89  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 148 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 206

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 207 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 266

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++    
Sbjct: 267 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 326

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 327 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 386

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 387 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 446

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 447 SVLREANQAI 456


>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
           PEST]
 gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 3/327 (0%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+ L +APT
Sbjct: 227 TPIQAQAIPAALSGRDIIGIAKTGSGKTAAFLWPMLVHIMDQRE-LGPGDGPIGLILAPT 285

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL++Q+  E +       + +  C GG S   + + L+ GA IVV TPGR+ D ++ K 
Sbjct: 286 RELSLQIYNEAKKFGKVYNISICCCYGGGSKWEQSKALEQGAEIVVATPGRMIDMVKIKA 345

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
            N+  +  +VLDEAD+M ++GF   +  I +     R+ L+FSAT    +  LA++   D
Sbjct: 346 TNLQRVTYLVLDEADKMFNMGFEPQVRSICNHIRPDRQTLLFSATFKKRVEKLARDVLTD 405

Query: 204 AVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            VR+        +SD+  R +L+    S  +  + N+++     + ++F + +A      
Sbjct: 406 PVRIIHGDLGEANSDVTQRIILLPTVQSKWNWLLTNLVKMLSEGSVLIFVTKKADAEETA 465

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L      VV L G++ Q ER+  +   +     + +ATDVAARG+D+P +  V++ ++
Sbjct: 466 NNLRLKDNDVVLLHGDMDQSERNFVITRFKRKDVDIMVATDVAARGLDIPHIRTVVNYDI 525

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + + +   HR GRTGRAG KG +  +I
Sbjct: 526 ARDIDTHTHRIGRTGRAGEKGTAYTLI 552


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 181/348 (52%), Gaps = 9/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  Q + + +S+ GY  LT VQ+  +      +D++  AQTGSGKT AF L +   ++ +
Sbjct: 242 NFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKD 301

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                F     P  + +APTREL  Q+  E       T +   V  GG       R +  
Sbjct: 302 GVTASFPKQQDPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQ 361

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKK 179
           G +I+  TPGRL D I    +++  +K +VLDEAD MLD+GF  D++ ++      S  +
Sbjct: 362 GCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDR 421

Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           R+ LMFSAT    +  LA  + K D + + I +     SD+    + V  LS RD  ++ 
Sbjct: 422 RQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDK-LIE 480

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G +  +VF  T+         L +      ++ G+  Q+ER  AL+  R G+ ++
Sbjct: 481 ILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQI 540

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VA+RG+D+ +++ VI+ +L +  E+ +HR GRTGR G  G +V
Sbjct: 541 LVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAV 588


>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 432

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 193/373 (51%), Gaps = 11/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
           NI + I  AL + G+   T +QE    P +R  KDV+  AQTG+GKT+A+ + L   L  
Sbjct: 7   NISKQILMALEDAGFEQPTPIQERAF-PVIRSGKDVIGIAQTGTGKTLAYLIPLLMKL-- 63

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++  + P AL I PTREL VQV   +E L     +      GG ++  ++  +  G
Sbjct: 64  ---HYAQGNYPRALVIVPTRELVVQVCESVELLTEYMDIRCVGIYGGTNIRTQQAAVYEG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGR  D      +    +K VV+DEAD ++D+GF   +  IL+  P+K + L+
Sbjct: 121 VDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLMDMGFMPQLRSILEVVPEKHQTLL 180

Query: 185 FSATISPAITTLAKNY-QKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILR-Y 241
           FSAT S  I  LA  +   + VR+   +       +   R  L  +  + N +  +L   
Sbjct: 181 FSATFSTTIAELAAEFLAPEPVRIETGNPTTPVELVTQLRYDLPNIQTKINLLKLLLTDK 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRARVCIA 300
              +  ++F  T+ +  R  + L +H   ++  L    +Q  R NAL++ ++G+ R+ ++
Sbjct: 241 EEFRRVMIFTETKKNADRIVERLGDHWKGELSVLHSNKAQNSRLNALKVFKEGKTRIMVS 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+ D+  VI+ ++ S PE  +HR GRT RAG++G ++  + +  + + E + 
Sbjct: 301 SDVAARGIDVQDVSHVINFDIPSIPEEYIHRIGRTARAGKEGTAISFVTEKEEPKFEEIE 360

Query: 361 REANVSVVWEPAP 373
           +     V W   P
Sbjct: 361 KLIGQQVEWAALP 373


>gi|313633234|gb|EFS00103.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           N1-067]
 gi|313637832|gb|EFS03169.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           S4-171]
          Length = 435

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     D+ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/365 (33%), Positives = 189/365 (51%), Gaps = 8/365 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  +  A++++ Y   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 218 IKNFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 278 IVHIM-DQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +V+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 337 KELKAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 397 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIK-QVVNVLPSDVEKMPWLL 455

Query: 239 LRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF S +A V    K L +  F++ AL G+  Q  R   LQ  + G  
Sbjct: 456 EKLPGMIDDGDVLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTY 515

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R
Sbjct: 516 HVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEAR 575

Query: 355 RAERL 359
            A  L
Sbjct: 576 FAGEL 580


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           +NG  +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ENGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSI 357


>gi|182437685|ref|YP_001825404.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466201|dbj|BAG20721.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 754

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL A  
Sbjct: 80  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLAALA 136

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 137 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 196

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 197 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 256

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 257 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVVKPKDKAPVTAAIAARKG--R 314

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 315 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 374

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V
Sbjct: 375 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGV 433


>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 605

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 177/341 (51%), Gaps = 4/341 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEND 67
           I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +   L    +  +
Sbjct: 12  ILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHKLTMSRSATN 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F       AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  I
Sbjct: 72  KFGGVGI-RALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQISKLKKGVDI 130

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D  +   L++S ++ ++LDEAD MLD+GF  D++ IL   PK+++ L+FSA
Sbjct: 131 LVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPKEKQSLLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA    K+   + +   N     I      V    +   + +I+  +     
Sbjct: 191 TFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHIINENKWSQV 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L ++  + +AL G  SQ  R+ AL   + G  R  +ATD+AARG
Sbjct: 251 LVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALVATDIAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V  +
Sbjct: 311 IDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFV 351


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/395 (31%), Positives = 202/395 (51%), Gaps = 32/395 (8%)

Query: 5   ENIPQVI--------GEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ENIP  I        G  L+E      +V  T VQ+  +   L  +D++  AQTGSGKT 
Sbjct: 45  ENIPPAITSFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTA 104

Query: 53  AFGLALASTLL------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
           AF   + + +L      + + R S  + PLAL ++PTREL+ Q+  E +    +TGV V 
Sbjct: 105 AFCFPIIAGILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVV 164

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG SV  + ++L+ G  I+V TPGRL D ++   +++S ++ + LDEAD MLD+GF 
Sbjct: 165 VIYGGTSVQSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFE 224

Query: 167 DDIEFILDSS----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++++      +R+ ++FSAT    I  LA ++  + + + +         I  R
Sbjct: 225 PQIRKIVENTDMPPAGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQR 284

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              V   D+ + +++++               +VF  T+         L +       + 
Sbjct: 285 VEYVHDVDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIH 344

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ +Q ER +AL+  R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRT
Sbjct: 345 GDRTQVEREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRT 404

Query: 336 GRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367
           GRAG+ G +         ++ R    L +EAN  V
Sbjct: 405 GRAGKSGFATAFFTDKDTSLARPLVDLMQEANQQV 439


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 184/354 (51%), Gaps = 21/354 (5%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GE L++      YV  T +Q   +   +  +D++  AQTGSGKT AF   +   +L   
Sbjct: 140 LGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICGIL--R 197

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++ S   A    P AL ++PTREL+ Q+  E +    KTG+ V V  GG  + ++ R+L+
Sbjct: 198 NQLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLE 257

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPK 178
            G  I+V TPGRL D I    +++  +K + LDEAD MLD+GF   I  I++      P 
Sbjct: 258 RGVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 317

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++  + + +++         I  R   V  +D+   ++++
Sbjct: 318 ARQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDL 377

Query: 239 LRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L+              +VF  T+  V    + L  +     A+ G+  Q ER  AL+  +
Sbjct: 378 LQSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFK 437

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            G   + +ATDVAARG+D+P +  VI+ +L    ++ +HR GRTGRAG+ G++ 
Sbjct: 438 SGATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLAT 491


>gi|219115677|ref|XP_002178634.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410369|gb|EEC50299.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 417

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 183/342 (53%), Gaps = 21/342 (6%)

Query: 36  REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
           R++D++  A+TGSGKT+AF L  A + ++E+        P  L +APTRELA+Q    L+
Sbjct: 22  RKRDIVGIAETGSGKTLAFALP-ALSAMSEDTSTRKRRLPRMLVLAPTRELAMQSDEVLK 80

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
              A   +   V  GGV  + ++ +L+ G   VV TPGR+ D I+ +  ++S +  +VLD
Sbjct: 81  EFGAVVSIKSLVVYGGVPKYEQKNELKKGVDCVVATPGRIKDLIQERACDLSAVDYLVLD 140

Query: 156 EADEMLDLGFRDDIEFILDSSPKK---RRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           EAD MLD+GF +D+ FI+ +   K   R+  MFSAT   AI  +A +Y  D +RV +  E
Sbjct: 141 EADRMLDMGFEEDVRFIISNCKSKEQGRQTAMFSATWPAAIQKIAMDYMVDPIRVYVGFE 200

Query: 213 NRQHSD---ID--------YRAVLVALSD--RDNAIVNILRYHGAK---NAIVFCSTRAS 256
           +   S+   +D           ++  + D  RD  + +ILR    K     +VF   +  
Sbjct: 201 SIVGSNGGGVDDSLSANKRVTQIVEVVEDRARDARLRDILRKVHMKRDNRVLVFGLYKKE 260

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R    L +  +   ++ G  +Q  R+ AL   +DG   + IATDVAARG+D+P++E V
Sbjct: 261 AERLEYSLRKDGWDCCSIHGNKTQVARTAALAQFKDGSCPLLIATDVAARGLDIPNVEAV 320

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           I+       E+ +HR GRTGRAG+ G+S  F  P +     E
Sbjct: 321 INFTFPLTIEDYVHRIGRTGRAGKTGVSYTFFQPGDKSHAGE 362


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|28900438|ref|NP_800093.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 416

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 184/347 (53%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP ++ E L    Y   T +Q   +   L  +D++  A TGSGKT AF L +   +L + 
Sbjct: 16  IPTLV-ERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQKILQQG 74

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
             NDR     + L L   PTRELA QV   ++    + +  +      GGVSV+ +   L
Sbjct: 75  ESNDRRGNFVSHLILV--PTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLAL 132

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P+K++
Sbjct: 133 RGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQ 192

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    +T LA++   D V V + S   + S +  R   V   ++   + ++++ 
Sbjct: 193 TLLFSATFPEKVTALAQHLLNDPVEVQLQSA--EASTLVQRVFSVNKGEKTAVLAHLIKQ 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V IAT
Sbjct: 251 HQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVLIAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 311 DIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933390|ref|YP_001384035.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934793|ref|YP_001387577.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 421

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 193/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+V V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSVIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDVTHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|294813953|ref|ZP_06772596.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326442363|ref|ZP_08217097.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326552|gb|EFG08195.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 757

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 85  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARLAQGR 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 145 ---TEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 202 ILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQRMLFS 261

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 262 ATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVVKPKDKAPVTAAIAARKG--R 319

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 320 TIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 379

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V
Sbjct: 380 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRLMEDAGV 438


>gi|239942478|ref|ZP_04694415.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239988942|ref|ZP_04709606.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291445934|ref|ZP_06585324.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291348881|gb|EFE75785.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 742

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/374 (32%), Positives = 191/374 (51%), Gaps = 14/374 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL A  
Sbjct: 66  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLAALA 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 123 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 183 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 242

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 243 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVVKPKDKAPVTAAIAARKG--R 300

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 301 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 360

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V 
Sbjct: 361 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGVD 420

Query: 367 V---------VWEP 371
                     V+EP
Sbjct: 421 ASRHIVQGAGVFEP 434


>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
 gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    D +        L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKL--SEDPY----GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLG---FRDDIEFILD 174
            +L    H+VV TPGRL DHIR    +N++ ++ +++DEAD +L+ G   F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAY 234

Query: 235 IVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V++++     H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 194/364 (53%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +  +    
Sbjct: 542 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPQLEDG 600

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 601 DGAIAIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQIAELKRGAEIIVCTP 660

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 661 GRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 720

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    D++  AV++    +   ++ +L  Y  A + I
Sbjct: 721 PRQMEALARRILKKPIEVIVGGRSVVCKDVEQHAVILNDDAKFFKLLELLGIYQEAGSII 780

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 781 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 840

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 841 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIVRALDLSGT 900

Query: 369 WEPA 372
             PA
Sbjct: 901 PVPA 904


>gi|325676734|ref|ZP_08156407.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552282|gb|EGD21971.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 421

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 176/362 (48%), Gaps = 5/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P ++  AL   G      +Q A +   L  +DVL    TGSGKT+AFGL L   L   
Sbjct: 13  GLPPILVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVRLKGG 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    S P A+ +APTRELA Q+ + L+      G+  A  +GGV    +   L    
Sbjct: 73  ASR---PSRPRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRTV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL DH+    + +  ++   +DEAD M +LGF   +  ILD +P+  + L+F
Sbjct: 130 DVVIATPGRLADHVSQGTITLDDVRITTVDEADHMAELGFLPQVTEILDRTPETAQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL   Y  D V    A        +++  + V    +   +  I    G  
Sbjct: 190 SATLDGEVDTLVARYLHDPVTHATAEAVAAVDSMEHHVLHVPREIKYPTVARIAARKG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+A V R T  L         L G+  Q  R+  L     G   V +ATDVAA
Sbjct: 248 RTLLFVRTKAGVDRLTDELRAAGIAAGGLHGDKPQGHRTRVLAEFASGTLPVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  + P+  LHR+GRT RAG  G+ V V+ +  +  A ++ R A V
Sbjct: 308 RGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAGESGVVVTVVTEEERGPAAKVMRAAGV 367

Query: 366 SV 367
            V
Sbjct: 368 DV 369


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 183/358 (51%), Gaps = 11/358 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F   ++S  L   D      A  AL
Sbjct: 42  GFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATF--VISSLQLINYDYV----ACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L +  LK  +LDEADEML  GF+  I  +        ++ +FSAT+   I  L  
Sbjct: 156 IDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D   + +  +      I  R   VA+   +   + + ++        +I++C+TR 
Sbjct: 216 RFMRDPKTILVKKDELTLEGI--RQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRK 273

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +   LF V  + G++ Q++R   ++  R G  RV + TD+ ARGID+  + L
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           VI+ +L  +P+  +HR GR+GR GRKG+++  +  + + + +    E+  S   E  P
Sbjct: 334 VINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMP 391


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 177/345 (51%), Gaps = 4/345 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +       P+ L 
Sbjct: 275 YTQPTPIQAQSIPVALSGRDLIGIAKTGSGKTAAFVWPMLVHIMDQKE-LDSGDGPIGLI 333

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+  E +       + V  C GG S   + + L++GA IVV TPGR+ D +
Sbjct: 334 LAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSKALESGAEIVVATPGRIIDLV 393

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+S +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 394 KMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKRIEKLARD 453

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHGAKNAIVFCSTRAS 256
              D +R+        ++D+    ++   +          NI+ Y  + + ++F + + +
Sbjct: 454 ALTDPIRIVQGDVGEANTDVTQHVIVFYKNPTGKWTWLNQNIVEYLSSGSLLIFVTKKLN 513

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L    ++V+ L G++ Q ER+  +   +     + +ATDVAARG+D+P +  V
Sbjct: 514 AEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSILVATDVAARGLDIPHIRTV 573

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           I+ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R
Sbjct: 574 INYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGHLVR 618


>gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 416

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 186/345 (53%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++ E L E  Y   T +Q   +   L  +D++  A TGSGKT AF L +   +  ++
Sbjct: 16  IPTLV-ERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTAAFSLPILQKICQQD 74

Query: 67  DRFSPASAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
              S     ++ L + PTRELA QV   ++    + +  +      GGVS + +   L+ 
Sbjct: 75  KPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVFGGVSANPQMLALRG 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G+ IVV TPGRL D +    + +  ++ +VLDEAD ML LGF +++  IL   P+K++ L
Sbjct: 135 GSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEELNKILALLPEKKQTL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +T+LA++   + V V + S   + S +  R   V    +   + ++++ H 
Sbjct: 195 LFSATFPEKVTSLAQHLLSNPVEVQLQSA--ETSTLVQRVFSVNKGQKTAVLAHLIKQHQ 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F + + S +   + L++         G+  Q  R+  L+  + G  +V IATD+
Sbjct: 253 WRQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGDIQVLIATDI 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I
Sbjct: 313 AARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLI 357


>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 463

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/317 (34%), Positives = 167/317 (52%), Gaps = 1/317 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT  F L +   L+A + R     
Sbjct: 15  AVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPMLHRLMANHGRGGRRQ 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +            +  GGVS+      ++ G  I+V TPG
Sbjct: 75  V-RALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLEAIKLGVDILVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + L ++ L+ +VLDEAD MLD+GF  DI  I+ + P++R+ L+FSAT S  I
Sbjct: 134 RLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEERQTLLFSATFSNEI 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +  K    + ++  N     ++ R + V    +   + +++  +  +  +VF  T
Sbjct: 194 KELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMIGRNNWQRVLVFVRT 253

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R    + +     VA+ G+ SQ  R+ AL   R+G+ RV +ATD+AARG+D+  L
Sbjct: 254 KQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLVATDIAARGLDIDQL 313

Query: 314 ELVIHAELSSNPENLLH 330
             VI+ EL    E+ +H
Sbjct: 314 PHVINFELPQVAEDYIH 330


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 182/341 (53%), Gaps = 12/341 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +     KDV+V A+TG+GKT +FG+ L   L  +    +   A
Sbjct: 204 LQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRA 263

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+Q+  EL  +  K  + VA   GG    ++   +++G   +VGTPGR
Sbjct: 264 PRVIILTPTRELAIQITNELRSMTKK--LKVACFYGGTPYQQQVFAIKDGIDFLVGTPGR 321

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATI 189
           + D ++   L+++ LK VVLDE D M D+GF + +E IL       P++  + L+FSAT 
Sbjct: 322 IRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATC 381

Query: 190 SPAITTLAKNY-QKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y +K   +V++     Q + I  ++ A+    S +   + +I++ Y G+ 
Sbjct: 382 PDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSH 441

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC ++      +            L G+L Q+ER   L+  R G   V IAT+VA
Sbjct: 442 GKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVA 501

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 502 ARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 542


>gi|302309551|ref|NP_986999.2| AGR333Cp [Ashbya gossypii ATCC 10895]
 gi|299788412|gb|AAS54823.2| AGR333Cp [Ashbya gossypii ATCC 10895]
          Length = 504

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 197/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L     L   + +F P 
Sbjct: 52  KAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEML--HSLKFKPR 109

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 110 NGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLAKGVNLLI 166

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+V+DEAD +L++GF D+++ I+   P + R+ ++FSA
Sbjct: 167 ATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSA 226

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIV-NILRYHGA 244
           T +  +  LA+ + +   + +N+ SE    + D   +  +V  SD+   ++   L+    
Sbjct: 227 TQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFTFLKKFQN 286

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + TDVA
Sbjct: 287 KKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 346

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 347 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPHEL 396


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 178 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 237

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 238 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 297

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 298 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 357

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 358 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 417

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 418 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 476

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 477 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 527


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 173/321 (53%), Gaps = 13/321 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P +          P  L +APTREL  
Sbjct: 224 RDLMACAQTGSGKTGGFLFPVLSESYLNGPAPVPETTGAFSSHKVYPTILVMAPTRELVS 283

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  + ++ R+L  G  ++V TPGRL D +    +++++
Sbjct: 284 QIYEESKKFSYRSWVRPCVVYGGADIGQQMRNLDRGCDLLVATPGRLKDLLERGKVSLAN 343

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSS--PK--KRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I++    P+   R+ LMFSAT    I  LA+++ KD 
Sbjct: 344 IKYLVLDEADRMLDMGFEPQIRHIVEECDMPEVTDRQTLMFSATFPRDIQMLARDFLKDY 403

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V +++        +I  + + V   D+ + I+++L  +     IVF  T+    +    L
Sbjct: 404 VFLSVGRVGSTSENITQKILYVEDEDKKSVILDLLAANENGLTIVFTETKRMADQLADFL 463

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   ++G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 464 YDQGFPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVGHVINFDLPSD 523

Query: 325 PENLLHRSGRTGRAGRKGMSV 345
            ++ +HR GRTGRAG  G++ 
Sbjct: 524 IDDYVHRIGRTGRAGNVGIAT 544


>gi|146418687|ref|XP_001485309.1| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 199/361 (55%), Gaps = 11/361 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +     L +   +F P +
Sbjct: 119 AIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSL--KFKPRN 176

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+Q+      L A     + + IGG +  +E   L  G ++++ TPG
Sbjct: 177 GTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPG 236

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           RL DH++  KG    +LKA+V+DEAD +L++GF D+++ I+   P  +R+ ++FSAT + 
Sbjct: 237 RLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDERQSMLFSATQTT 296

Query: 192 AITTLAK-NYQKDAVRVNIASENR-QHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI 248
            +  LA+ + +   + +N+  E     +D   +  +   SD R   + + LR +  K  I
Sbjct: 297 KVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLFSFLRRNIKKKII 356

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+   V  F ++L      V+ L G+  QQ+R+N      + +  + I TDVAARG+
Sbjct: 357 VFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARGL 416

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           D+P ++ +I  +   +P + +HR GRT R  G KG S+ F+ P  +     R  + ANV 
Sbjct: 417 DIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGFL--RYLKAANVP 474

Query: 367 V 367
           +
Sbjct: 475 L 475


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 183/349 (52%), Gaps = 9/349 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL +  + ++T +QE  +   L   DVL  AQTG+GKT A+ L + S L   +D   
Sbjct: 12  ILDALYDMHFEDMTPIQEQCIPEILDGYDVLGVAQTGTGKTAAYLLPILSEL---DDGDY 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAH 126
           P  A  A+ ++PTRELA Q+ + ++   Y    V      GG   +R   E R ++ GA 
Sbjct: 69  PKDAINAVIMSPTRELAQQIDQAMQGFGYYLDDVSSVAVYGGNDGNRYDQELRSMRMGAD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL  H++   L++S     VLDEAD MLD+GF +DI  I+   P   + +MFS
Sbjct: 129 VLIATPGRLLSHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVKELPASCQRIMFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     + V + IA  ++    I   A +     +   I +I +    + 
Sbjct: 189 ATMPKKIRELAVQLLHNPVEIQIAV-SKPAEKIHQMAYVCYEPQKLKIIQDIFKKGDLQR 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +  V   T+ L         +  +LSQ ER  A+   + G+  V +ATD+ AR
Sbjct: 248 VIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAGQTDVLVATDIVAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           GID+ D+ LVI+ ++ S+ E+ +HR GRT RA R G ++ FV   +M R
Sbjct: 308 GIDIDDIRLVINYDVPSDSEDYVHRIGRTARADRDGEAITFVSDDDMYR 356


>gi|218897115|ref|YP_002445526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541908|gb|ACK94302.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 389

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILR 240
           + FSATI+ A    A++    AV   +    R  S   +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATITKAAEDAARDL---AVEPQLMRITRAESKSLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 193/345 (55%), Gaps = 13/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A + P L  +D+ V+AQTGSGKT AF L + + L+ +     P 
Sbjct: 25  KAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNRLIGDA---QPR 81

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  +E+E     T +   +  GG     +   L+    +++GTP
Sbjct: 82  VDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDVLIGTP 141

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +H+    L +  ++ +V+DEAD MLD+GF +D++ ++    K+++ L+FSAT   A
Sbjct: 142 GRLIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTLLFSATSGGA 201

Query: 193 -ITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKN 246
            +  +     +D +  ++N  SE  + +    R  ++   D   ++  +  +L     + 
Sbjct: 202 GLREMVAKVLRDPLHLQLNRVSELNEST----RQQIITADDVAHKEKLVHWLLANESYQK 257

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F +TRA   R    L     +V  L GE  Q+ER  A++ ++ G  +V +ATDVAAR
Sbjct: 258 AVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATDVAAR 317

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+  ++LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 318 GLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHN 362


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 186 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 245

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 246 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 305

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 306 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 365

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 366 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 425

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 426 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 484

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 485 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 535


>gi|290987818|ref|XP_002676619.1| predicted protein [Naegleria gruberi]
 gi|284090222|gb|EFC43875.1| predicted protein [Naegleria gruberi]
          Length = 493

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 180/344 (52%), Gaps = 6/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P  I  A+++  +   T+VQ+  +   +   D++  A+TGSGKT ++ + +    + L 
Sbjct: 95  LPLEIINAITDLKFKEPTAVQKQCIPIAMNGIDLVGLAETGSGKTASYIIPMCCQIAKLP 154

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ND  +    P  L + PTRELA Q+ RE      +    V   IGGVS+ ++ R ++ 
Sbjct: 155 RMNDEIA-KDGPYGLILVPTRELAEQIEREATKYARQFEFRVQAIIGGVSIEKQSRLIRG 213

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181
           G  I+V TPGRL D +    + ++    +VLDEAD+M+++ F  D+  IL++ P   +R+
Sbjct: 214 GCEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVNTILENMPTHIQRQ 273

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+ P +  +A  Y K  V V +    R    I+   + +   +     +  L Y
Sbjct: 274 TMLFSATMPPEVENIAMKYLKKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDKLLELLY 333

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVFC+ +  V    K ++   F+  ++ G  SQ+ R++AL+  + G+  V +AT
Sbjct: 334 DADPPVIVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKSGKFDVIVAT 393

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DV  RGID+  + LV++  L        HR GRTGRAGR G +V
Sbjct: 394 DVLGRGIDISGVTLVVNYSLPKTISAYTHRIGRTGRAGRTGRAV 437


>gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
 gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
          Length = 428

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 183/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           PQVI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PQVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|223590217|sp|A5DID7|HAS1_PICGU RecName: Full=ATP-dependent RNA helicase HAS1
 gi|190346774|gb|EDK38940.2| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 199/361 (55%), Gaps = 11/361 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +     L +   +F P +
Sbjct: 119 AIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSL--KFKPRN 176

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+Q+      L A     + + IGG +  +E   L  G ++++ TPG
Sbjct: 177 GTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPG 236

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           RL DH++  KG    +LKA+V+DEAD +L++GF D+++ I+   P  +R+ ++FSAT + 
Sbjct: 237 RLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDERQSMLFSATQTT 296

Query: 192 AITTLAK-NYQKDAVRVNIASENR-QHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI 248
            +  LA+ + +   + +N+  E     +D   +  +   SD R   + + LR +  K  I
Sbjct: 297 KVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLFSFLRRNIKKKII 356

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+   V  F ++L      V+ L G+  QQ+R+N      + +  + I TDVAARG+
Sbjct: 357 VFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARGL 416

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNMQRRAERLFREANVS 366
           D+P ++ +I  +   +P + +HR GRT R  G KG S+ F+ P  +     R  + ANV 
Sbjct: 417 DIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGFL--RYLKAANVP 474

Query: 367 V 367
           +
Sbjct: 475 L 475


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 184/358 (51%), Gaps = 11/358 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L   D +  AQ+G+GKT  F   ++S  L   D      A  AL
Sbjct: 42  GFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATF--VISSLQLINYDYV----ACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H+VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDIDKLKQGVHMVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L +  LK  +LDEADEML  GF+  I  +        ++ +FSAT+   I  L  
Sbjct: 156 IDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +D   + +  +      I  R   VA+   +   + + ++        +I++C+TR 
Sbjct: 216 RFMRDPKTILVKKDELTLEGI--RQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRK 273

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +   LF V  + G++ Q++R   ++  R G  RV + TD+ ARGID+  + L
Sbjct: 274 KVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSL 333

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           VI+ +L ++P+  +HR GR+GR GRKG+++  +  + + + +    E+  S   E  P
Sbjct: 334 VINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKLKKIESYYSTQIEEMP 391


>gi|21222498|ref|NP_628277.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
 gi|5918498|emb|CAB56376.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 740

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 187/363 (51%), Gaps = 5/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +TL   
Sbjct: 67  GLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLATLAGG 126

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G 
Sbjct: 127 R---TEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGV 183

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 184 DVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLF 243

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I TL   Y KD     + +     + + +  ++V   D+      I    G  
Sbjct: 244 SATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAIASRKG-- 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAA
Sbjct: 302 RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVAA 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 362 RGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGV 421

Query: 366 SVV 368
              
Sbjct: 422 DAT 424


>gi|299115674|emb|CBN75874.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 699

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 193/381 (50%), Gaps = 28/381 (7%)

Query: 5   ENIPQ--------VIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P+        ++GE L       GY   T VQ+  +   +  +D++  AQTGSGKT 
Sbjct: 202 ENVPEPIDSFELDMLGEDLMRTTNLCGYTKPTPVQKYSIPIGISNRDLMACAQTGSGKTA 261

Query: 53  AFGLALASTLLAENDRFSP-----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            F      +LL       P      S P+AL +APTRELA Q+  E      +TG+   V
Sbjct: 262 GFLFPTLISLLRRGGPQYPNDGRRKSYPVALVLAPTRELASQIYDEARRFCYRTGIAPVV 321

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  V  + R+L+ G  ++V TPGRL D +    ++++ ++ +VLDEAD MLD+GF  
Sbjct: 322 IYGGADVRSQFRELERGCDLLVATPGRLVDLLERGRISLACIQFLVLDEADRMLDMGFEP 381

Query: 168 DIEFILDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I++        +R+  MFSAT    I  LA ++  D + + +        D+    
Sbjct: 382 QIRRIVEEEDMTRVGERQTFMFSATFPREIQQLAADFMTDYIFLAVGRVGSASKDV---T 438

Query: 224 VLVALSDRDNAIVNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
             V   D++     +LR      A    +VF  T+ +       L++  +   ++ G+ +
Sbjct: 439 QTVEYVDQNQKFPMLLRTLNNLEATGLVLVFTETKRNADYLEYQLSDQGYPASSIHGDKT 498

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER +AL++ + G   + +ATDVAARG+D+ ++  VI+ +L +N ++ +HR GRTGR G
Sbjct: 499 QREREDALRLFKTGTTPILVATDVAARGLDINNVTQVINYDLPTNIDDYVHRIGRTGRVG 558

Query: 340 RKGMSVFVIPQNMQRRAERLF 360
             G ++  + +  +  A  L+
Sbjct: 559 NVGNALSFMNEKNRNVARELY 579


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 758

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 184/355 (51%), Gaps = 27/355 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+S  G+   T +Q+  +   L  KD+  SAQTGSGKT AF L +   L   + R  
Sbjct: 142 IMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPILERLQFRSRR-- 199

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              +   + I P RELA Q    LE L   T +  ++ +GG+ +  +  +L+N   +VV 
Sbjct: 200 -VQSTRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQEAELRNRPDVVVC 258

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+R  K +++  L+ +VLDEAD +L+LGF +++  ++   P +R+ ++FSAT+
Sbjct: 259 TPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCPVQRQTMLFSATM 318

Query: 190 SPAITTLAKNYQKDAVRV----------NIASEN---RQHSDIDYRAVLVALSDRDNAIV 236
           +  +  L     K  VR+          ++  E    R + + D  A+L+AL  R     
Sbjct: 319 TSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAILLALCTR----- 373

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              R     N IVF  T++   R   +      +   L G L Q+ER  ALQ  RDG   
Sbjct: 374 -TFR----SNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGTVD 428

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           V + TD+AARGID+  +  VI+ E+  +    +HR GRT RAGR G +V +  ++
Sbjct: 429 VLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSES 483


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 61  KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 120

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 121 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 180

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 181 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 240

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 241 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 300

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 301 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 359

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 360 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 410


>gi|219120692|ref|XP_002181079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407795|gb|EEC47731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 500

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/380 (31%), Positives = 189/380 (49%), Gaps = 23/380 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             PQ I  +L ++G    T +Q   L   L  +D++  A TGSGKT+ FGL L    L E
Sbjct: 62  KFPQPILASLKQKGIARPTPIQMQGLPVALAGRDMVGIAFTGSGKTLTFGLPLVMAALEE 121

Query: 66  NDRF--SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA---------------VC 108
             R   +P   P+ + +AP+RELA Q    +  L        A               + 
Sbjct: 122 ELRMPIAPGEGPVGIILAPSRELARQTYELVSELATALTTPPAGDSREKNRYPQLRTQLL 181

Query: 109 IGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           IGG SV  + + +Q  G H VV TPGRL D ++ K LN+   + + LDEAD MLDLGF +
Sbjct: 182 IGGESVRDQVQTVQQQGIHCVVATPGRLRDLLKRKALNLMICRYICLDEADRMLDLGFDE 241

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           ++  I++  P +R+ L+FSAT        A+      + VN+      + D+      V 
Sbjct: 242 EVGTIMNHFPHQRQTLLFSATFPKKFQDFARQTLVQPIVVNVGRAGAANLDVIQEVEYVK 301

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +   +++ L+   A   I+FC  +  V    + L     Q V++ G   Q+ER+ A+
Sbjct: 302 QEAKIVYLLHCLQ-KTAPPVIIFCERKGDVDDIHEYLLLKGVQAVSIHGGKDQEERNEAI 360

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            + + G+  V IATDVAA+G+D   ++ VI+ ++ +  EN +HR GRTGR G+ G++   
Sbjct: 361 TLFKSGQKDVLIATDVAAKGLDFAAIQHVINFDMPTEIENYVHRIGRTGRCGKTGVATTF 420

Query: 348 IPQNMQRRA----ERLFREA 363
           I ++ +       + L REA
Sbjct: 421 INKSCEETTLLDLKGLLREA 440


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+       P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L
Sbjct: 75  ---PAAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           + G  I+V T GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +
Sbjct: 132 EQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 61  KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 120

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 121 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 180

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 181 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 240

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 241 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 300

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 301 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 359

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 360 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 410


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 192/371 (51%), Gaps = 11/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   N    P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKLSEGN---HPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYLPKERQTVMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   + +A        I  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNNPSEIKLAVSKPAEKII--QAAYVCYENQKLGIIRSLFADEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVS 366
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   + +  F E ++ 
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNFKSIENFLEKDIY 368

Query: 367 VVWEPAPSVEA 377
            +  PA   EA
Sbjct: 369 KIPIPAELGEA 379


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 192/361 (53%), Gaps = 8/361 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ +   ++++G+ + T++Q       L  +D++  AQTGSGKT+A+ L  A   +A 
Sbjct: 259 NFPEFVINEINKQGFPSPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYMLP-AIVHIAH 317

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                    P+ L +APTRELA Q+   +     ++K  +      GG     + RDL+ 
Sbjct: 318 QKPLQRGDGPIVLVLAPTRELAQQIQTVVRDFGTHSKPNIRYTCIFGGALKGPQVRDLER 377

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++L
Sbjct: 378 GVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 437

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M+SAT    +  LA+++  D +++N+ S N   + +I     +   ++++  ++++L+  
Sbjct: 438 MWSATWPKEVQALAEDFLHDYIQINVGSLNLSANHNIHQIVDICEENEKEGKLLSLLKEI 497

Query: 243 GA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R G++ + +
Sbjct: 498 ASDVNNKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILV 557

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358
           ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +  F  P N ++  E 
Sbjct: 558 ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSFGTAYTFFTPGNGRQAREL 617

Query: 359 L 359
           L
Sbjct: 618 L 618


>gi|322514183|ref|ZP_08067247.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
 gi|322119937|gb|EFX91940.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
          Length = 407

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 179/334 (53%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL  +G+   T +Q   L   L   D+   AQTG+GKT+AF +A    LL  ND  +   
Sbjct: 22  ALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTMAFLVATFHHLLT-NDIQTANK 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+  + E L   + + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQLQAIEQGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISP 191
           R+ D+++   +N+  ++ VVLDEAD M DLGF   I +++   S P +R  ++FSAT+SP
Sbjct: 141 RVIDYVKQGVINLDKVQVVVLDEADRMFDLGFIKGIRYLMRKCSKPDQRLTMLFSATLSP 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L     +  ++F 
Sbjct: 201 RVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L     +   L+G+++Q++R   L     G+  + +ATDVAARG+ +P
Sbjct: 261 NTKHKCEEIWSYLVADGHRAGLLTGDIAQKKRLALLDSFTKGQLDILVATDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 EVTHVFNYDLPDDREDYVHRIGRTGRAGESGHSI 354


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+ +   R+   I    YRA       +   + ++L+   A   I
Sbjct: 195 AIKDFAERLLEDPVEVSASPSTRERKKIHQWYYRAD--NYEHKFELLKHLLKQDDATRTI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
 gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
          Length = 428

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL+++G+   T +Q A L   +  KDV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALNKKGFNFCTPIQAATLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHFLLTH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + + L
Sbjct: 75  ---PAMDGKKTNQPRALIMAPTRELAVQIYSDSKELAEYTGLKMGLAYGGDGYDEQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           QNG  I+VGT GRL D+ +   ++++ ++ VVLDEAD M DLGF  DI +I    P    
Sbjct: 132 QNGVDILVGTTGRLIDYAKQGHVDLTAIQVVVLDEADRMYDLGFIKDIRWIFRRMPSAAD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT+S  +  LA     +   + +    +    I       +  ++   +  +L
Sbjct: 192 RLNLLFSATLSYRVRELAFEQMNNPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSI 357


>gi|156545118|ref|XP_001602070.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 821

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 186/367 (50%), Gaps = 28/367 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF--GLALASTLLA 64
            P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF   L L  T L 
Sbjct: 400 FPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITSLP 459

Query: 65  ENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + +R       P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 460 KIERTDEVDQGPWSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRLRM 519

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 520 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 579

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+  A+  LA+ Y +    V I S  +    
Sbjct: 580 DNEDAENEEKLLANYNSRKKYRQTVMFTATMPAAVERLARTYLRRPAVVYIGSIGKPTER 639

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +D+   ++ IL        I+F + +       + L +  +    L G  
Sbjct: 640 TEQIVHIMGEADKRRKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGK 699

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 700 GQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 759

Query: 339 GRKGMSV 345
           G+ G+++
Sbjct: 760 GKAGVAI 766


>gi|323332194|gb|EGA73605.1| Has1p [Saccharomyces cerevisiae AWRI796]
          Length = 505

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 196/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF   + +  L  + +F P 
Sbjct: 55  KAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAF--LIPAIELLHSLKFKPR 112

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 113 NGTGIIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLMKGVNMLI 169

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  +G    +LKA+++DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 170 ATPGRLLDHLQNTQGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSA 229

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+  E  N     ++   V+     R   + + L+ +  
Sbjct: 230 TQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQK 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + I TDVA
Sbjct: 290 KKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVA 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 350 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 399


>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 730

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 186/343 (54%), Gaps = 11/343 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS   + + T +Q   +   L  KD++ +A TGSGKT AF + +   L+     + P   
Sbjct: 246 LSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPILERLV-----YRPKKI 300

Query: 75  PLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P +  L I PTRELA+Q     + + A T + + +C+GG+S+  + ++L+    I++ TP
Sbjct: 301 PTSRVLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQELRKRPDIIIATP 360

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+R  +G ++ +++ +V+DEAD ML+ GF D++  I+   PK R+ ++FSAT++ 
Sbjct: 361 GRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKSRQTMLFSATMTE 420

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAI 248
            +  L +      VR+ + ++      +    + V       R   +V+I +    +  I
Sbjct: 421 KVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLVHICKTFFHRRVI 480

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +A   +   +          + G LSQ++R  AL+  RDG+    +ATDVA+RG+
Sbjct: 481 IFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDYLLATDVASRGL 540

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  +E VI+ E  ++ E  LHR GRT RAGR G ++ ++ +N
Sbjct: 541 DIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGEN 583


>gi|150863861|ref|XP_001382482.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
 gi|158514820|sp|A3LP87|DBP8_PICST RecName: Full=ATP-dependent RNA helicase DBP8
 gi|149385117|gb|ABN64453.2| Dead-Box Protein 8, ATP-dependent helicase involved in rRNA
           processing [Scheffersomyces stipitis CBS 6054]
          Length = 445

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 186/355 (52%), Gaps = 20/355 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+       T++Q   +   L   D +  A+TGSGKT+AF   + +      D F 
Sbjct: 12  LSEALAAMKIHTPTAIQSGCIPKILSGHDCIGGAKTGSGKTIAFAAPMLTQW--SEDPF- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L + PTRELA+Q+  +   L A   + ++V +GG    ++  +LQ   H V+ 
Sbjct: 69  ---GIFGLVLTPTRELALQIAEQFAALGASMNIKISVVVGGEDFVKQTLELQKKPHFVIA 125

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           TPGRL DHI   G      +  +K +VLDEAD +L   F  D+E      P  +KR+  +
Sbjct: 126 TPGRLADHILNSGEETISGLRRIKYLVLDEADRLLSNSFGGDLERCFSVLPPSEKRQTCL 185

Query: 185 FSATISPAITTLAKN---YQKDAV---RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           F+AT++ A+  L +      K  V    V    +    S +  + V V    ++  + +I
Sbjct: 186 FTATVTDAVRALKEKPPAQGKPPVFLHEVETVDQVAIPSTLSIKYVFVPSYVKEAYLNSI 245

Query: 239 LRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           LR   +    A++F +   +     + L +  F+V +L  E+ Q ER+N++Q  + G AR
Sbjct: 246 LRLPQYEKSTAVIFVNRTTTAEVLRRTLRKLEFRVASLHSEMPQSERTNSVQRFKAGAAR 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + IATDVA+RG+D+P +ELV++ ++ ++P++ +HR GRT RAGR G +V +I + 
Sbjct: 306 ILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEK 360


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|229098758|ref|ZP_04229696.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
 gi|229104916|ref|ZP_04235573.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228678490|gb|EEL32710.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228684602|gb|EEL38542.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
          Length = 436

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 180/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P+
Sbjct: 17  DAIRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++   + N+L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIELVKNMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LAE   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 IVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 188/369 (50%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + + ++G+   T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 124 FPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQ- 182

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +      P+ L +APTRELAVQ+  E    + K+  +   C+ GG     + RDL  G 
Sbjct: 183 PQLQYGDGPIVLVLAPTRELAVQIQTECA-KFGKSSRIRNTCVYGGAPKGPQIRDLARGV 241

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 242 EICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 301

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA++Y  D ++V I S      H+      V+   S RD  + ++     
Sbjct: 302 SATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALN 361

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+  + +AT
Sbjct: 362 ERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGKTSIMVAT 421

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--R 358
           DVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++ F    N +   +  +
Sbjct: 422 DVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTDGNSKLGGDLCK 481

Query: 359 LFREANVSV 367
           + REA+ ++
Sbjct: 482 IMREAHQTI 490


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 89  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 148 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 206

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 207 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 266

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 267 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 326

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 327 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 386

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 387 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 446

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 447 SVLREANQAI 456


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 181/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + +   P 
Sbjct: 278 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLMHLMDQKE-LQPG 336

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA IVV TP
Sbjct: 337 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIVVATP 396

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    
Sbjct: 397 GRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKR 456

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 457 IERLARDVLTDPVRIVQGDLNEANQDIT-QSVFVFPNPLQKWNWLLCHLVKFLSEGSVLI 515

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +A        L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 516 FVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDILVATDVAARGLD 575

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 576 IPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 627


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|312370822|gb|EFR19136.1| hypothetical protein AND_23001 [Anopheles darlingi]
          Length = 485

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 114/327 (34%), Positives = 170/327 (51%), Gaps = 14/327 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L+ +D + +A+TGSGKT AF L +   L  E       +A  AL + PT ELA Q+  + 
Sbjct: 9   LQGQDCIGAAKTGSGKTFAFALPILQKLSEE------PTANFALVLTPTHELAHQIAEQF 62

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVV 153
                     V V  GG     E + LQ+  HI+V  PGRL DH+ G    + + L+ +V
Sbjct: 63  IVAGQPMNARVCVVTGGTDQLLEAQKLQSRPHIIVAMPGRLADHLNGCNTYSFAALQFLV 122

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASE 212
           +DEAD +L   F DD+  I    P KR+ L FSAT+   + T++     +D    +  SE
Sbjct: 123 VDEADRVLSGSFDDDLRVIDRFLPAKRQNLFFSATMKDFLKTSIVFPIAQDVFEWSEQSE 182

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHL 268
                 +D R +L A  DRD  +   LR    +N     ++F +++      +  L+   
Sbjct: 183 VATVETLDQRYILCADYDRDMVLTEALRKFKEENEDASVMIFTNSKKDCQVLSMTLSSIG 242

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F  V L G + Q+ER  AL   +    R+ IATDVA+RG+D+PD++LV++  L   P   
Sbjct: 243 FDNVCLHGFMRQKERVAALNRFKSKHVRILIATDVASRGLDIPDVQLVLNHRLPKMPNEY 302

Query: 329 LHRSGRTGRAGRKGM--SVFVIPQNMQ 353
           +HR GRT RAGR GM  S+F  P++++
Sbjct: 303 IHRVGRTARAGRSGMAISIFRFPRDLE 329


>gi|289671143|ref|ZP_06492218.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 334

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 171/317 (53%), Gaps = 10/317 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V   AL+  G   LT +Q A++ P L  +D++ +AQTGSGKT+A+ L L    L      
Sbjct: 15  VFESALARAGVRTLTPIQVAMIPPMLAARDLIATAQTGSGKTLAYALPLLQQRLQ----- 69

Query: 70  SPASAPLALA---IAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           +P  AP  L    + PTREL  QV + L  L A     + +    GG +++ +   L+ G
Sbjct: 70  APEQAPRVLGGLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S +  +VLDEAD +LDLGF  +++ IL   P +R+ ++
Sbjct: 130 ADIVIATPGRLLDLVAHNALRLSQVSTLVLDEADRLLDLGFGAELDRILALLPSQRQSVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT  PAI +LAK   +D +R+ I +   Q   I  RA+ V    R   + ++L  H  
Sbjct: 190 VSATFPPAIASLAKRRLRDPLRITIEATPEQAPAIAQRAIAVDAGQRTQLVRHLLLEHAW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R +  +  + L++     + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 250 PQLLVFVASRHTADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQAEVQVLVATDLA 309

Query: 305 ARGIDLPDLELVIHAEL 321
            RGID+  L  V++ +L
Sbjct: 310 GRGIDIDALPAVLNYDL 326


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E +  + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 88  NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 146

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y++   + + CI GG     + RDL+ G
Sbjct: 147 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG 205

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 206 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 265

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ K+ V +NI + E   + +I     +    ++D+ ++ ++    
Sbjct: 266 WSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIM 325

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 326 SEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 385

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +  
Sbjct: 386 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 445

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 446 SVLREANQAI 455


>gi|315649347|ref|ZP_07902436.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315275335|gb|EFU38704.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 448

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 189/353 (53%), Gaps = 6/353 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G V  + VQ   + P L  KDVL ++QTG+GKT+A+ L +  ++  E         
Sbjct: 19  LAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQSIDPE------IKG 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L++   ++VGTPGR
Sbjct: 73  AQKLILAPTQELAVQIVRESERYGETRGIGVLGLIGGAAAKRQIEKLKSHPQLIVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  SAT+SP   
Sbjct: 133 VRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLSATVSPETA 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L K      V + I  E R  S +++   +    D+ + +  ++R++    AIVF +  
Sbjct: 193 ELVKKEMDQPVEIGIDPEQRTPSALEHYYFVTEERDKLDMLRRVVRHYNPDRAIVFVNAT 252

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             ++     L        A+ G+  +  RS  L   R+GR ++ +A+DVAARG+D+  L 
Sbjct: 253 EDLAEVEAKLNYLGLNAAAIYGDADKMTRSRVLNAFREGRTKLLVASDVAARGLDIEGLG 312

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S+
Sbjct: 313 MVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGISI 365


>gi|302774092|ref|XP_002970463.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
 gi|300161979|gb|EFJ28593.1| hypothetical protein SELMODRAFT_441099 [Selaginella moellendorffii]
          Length = 1198

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 175/306 (57%), Gaps = 10/306 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
             TGSGKT+  G  L + +  E  R +P S P  L +APTRELA Q+  E    + ++  
Sbjct: 224 GNTGSGKTL--GYLLPAFMHLERRRNNPRSGPTVLVLAPTRELATQIHEEAV-KFGRSSR 280

Query: 104 VVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           + + C+ GG S   + RD++ G  IV+ TPGRL D +  + +++  +  +VLDEAD MLD
Sbjct: 281 ITSTCVYGGASKGPQLRDIERGCDIVIATPGRLNDFLEMRRISLRQVSYLVLDEADRMLD 340

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF   I  I++  P +R+ LM++AT    +  +A +   + ++VNI + +   ++    
Sbjct: 341 MGFEPQIRKIVNEVPVQRQTLMYTATWPKEVRKIAGDLLMNPIQVNIGNTDDLAANKAIT 400

Query: 223 AVLVALSDRDNA--IVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             +  +S +D A  +  ILR    G+K  I+FCST+    +  + L    F  VA+ G+ 
Sbjct: 401 QCVEVVSPQDKARKLELILRTQEPGSK-IIIFCSTKRMCDQLARSLRRD-FGAVAIHGDK 458

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ ER   L   + G++ V +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRA
Sbjct: 459 SQGERDWVLSQFKAGKSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA 518

Query: 339 GRKGMS 344
           G  G++
Sbjct: 519 GATGLA 524


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 197/376 (52%), Gaps = 11/376 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +  +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A
Sbjct: 169 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPA 227

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
              +           P+ L +APTRELA QV +++   Y +   + + CI GG     + 
Sbjct: 228 IVHINHQPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQI 286

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 287 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 346

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ 
Sbjct: 347 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR 406

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 407 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 466

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 467 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 526

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 527 QVSDLISVLREANQAI 542


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 176/340 (51%), Gaps = 3/340 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+   T +Q       L  +DV+  A TGSGKT+AF L     + A+ 
Sbjct: 199 FPADVLDVIHRAGFKAPTPIQSQGWPMALSGRDVVGIAATGSGKTLAFILPAIIHIRAQ- 257

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L ++PTRELA Q   E       +G+      GGV   ++  DL+ GA 
Sbjct: 258 PMLRPGDGPICLVLSPTRELANQTQEECARFGTSSGIRNTCVYGGVPRRQQAYDLRRGAE 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 318 IVIATPGRLLDFLESGVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 377

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++  + ++VNI S + + +D   + +  V    + +  + ILR    +
Sbjct: 378 ATWPKEVQALARDFLTNPIQVNIGSLDLKVTDHVKQVIKCVTEGQKLDETLKILRSKNPE 437

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  ++      T++L +  F  +A+ G+  Q+ER   L   + GR  + +ATDVA
Sbjct: 438 SRCIIFTQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTIMVATDVA 497

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +RG+D+ D+ +VI+ +  S  E+ +HR GR GR    G S
Sbjct: 498 SRGLDVKDIRVVINYDFPSCVEDYIHRVGRAGRKTADGYS 537


>gi|212710675|ref|ZP_03318803.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
 gi|212686756|gb|EEB46284.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
          Length = 445

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 182/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +GY   T++QEA +   +  +DVL SA TG+GKT AF L     LL    + S   
Sbjct: 18  ALTNKGYERPTAIQEAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  + + L A   + VA   GGV+             IVV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQAKELCAHNHLDVATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVEILILDEADRMLDMGFAHDIETIAGETRWRKQTMLFSATLEGEA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D + ++     R+   I    YRA    L  +   + ++L+      +IV
Sbjct: 196 IRDFAERLLEDPIEIDAEPSRRERKKIQQFYYRA--DTLEHKTALLCHLLKQEDVTKSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V    + L +   +   L GE+ Q +R+ A++ +  G+ +V +ATDVA+RG+D
Sbjct: 254 FVRKRERVREVVQWLRDAGIEPCYLEGEMVQAKRNEAVRRLVTGQVKVLVATDVASRGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ++  V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 314 IENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLV 352


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 678

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 199/393 (50%), Gaps = 18/393 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + LS   +   T VQ   +   +  +D++ SAQTGSGKT A+ L +   LL +  + 
Sbjct: 263 ILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLPILHNLLKQPTQL 322

Query: 70  ---SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSV-HRERRDLQNG 124
                   P  + IAPTREL  Q+  E  W ++K T +   +  GG SV H++ + LQ G
Sbjct: 323 IYDEHHCEPHVVIIAPTRELVSQIS-ECVWKFSKGTDIRNGLLYGGTSVYHQKSKILQRG 381

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKR 180
            HI+  TPGRL D +    +  S +K  VLDEAD MLD+GF+ DIE +L +S     + R
Sbjct: 382 VHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLTNSTMPSIESR 441

Query: 181 RMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + +MFSAT +  I  +A +Y K D + V +        D+    + V    + NA+++I+
Sbjct: 442 QTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKFKKKNALLDII 501

Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF   +         L+E  F   ++ G   Q ER  AL+  +  R ++ 
Sbjct: 502 KEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALRDFKTNRMKIL 561

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           +AT VAARG+D+  +  V++ +L    +  +HR GRTGR G  G ++ F  P++    A 
Sbjct: 562 VATAVAARGLDIKGVNYVVNFDLPKTIDEYVHRIGRTGRLGNAGKAISFFDPESDGPLAA 621

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            L +     ++ +    V +     A+RIL  P
Sbjct: 622 ELIK-----ILKQADQEVPSFLNDAAERILASP 649


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 182/378 (48%), Gaps = 44/378 (11%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G+   T +Q   L   L+  D+   AQTG+GKT AF +AL   LL E     P SA
Sbjct: 24  LAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKTAAFLVALMQRLLHEPPEAMPESA 83

Query: 75  -----PLA-------------------------------------LAIAPTRELAVQVGR 92
                P++                                     L +APTRELAVQ+ +
Sbjct: 84  AAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRGPRALVLAPTRELAVQIHK 143

Query: 93  ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
           +   L   TG+   V  GG    ++R +L  G  I++GTPGRL D+ +    ++  ++ V
Sbjct: 144 DTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILIGTPGRLIDYYKQHVFDLKRIEVV 203

Query: 153 VLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           VLDEAD M DLGF  DI ++    P  ++R  ++FSAT+S  +T LA  +      V I 
Sbjct: 204 VLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSYRVTELAYEHMNHPRLVKIE 263

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
           +E      +     + A  ++   ++ ++R       IVF +T+    R    L  +   
Sbjct: 264 TEQVTADRVRQVCYMTANEEKIPLLLGLIRGWPDGRIIVFVNTKREADRVWGYLQGNGID 323

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
              LSG++ Q +R   L+   +G   V + TDVAARG+ +PD+  V++ +L  +PE+ +H
Sbjct: 324 TAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHIPDVTHVVNYDLPEDPEDYVH 383

Query: 331 RSGRTGRAGRKGMSVFVI 348
           R GRT RAG  G +V  +
Sbjct: 384 RIGRTARAGAAGDAVSFV 401


>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 388

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 191/344 (55%), Gaps = 13/344 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAEN 66
           I +AL ++ Y     +QE  +   L+ KD+L  AQTGSGKT +F L +   L    L +N
Sbjct: 20  ILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPILQMLQTKPLGKN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
              +      AL + PTRELAVQVG+  + +  A    + ++ + GGVS++ +   LQ G
Sbjct: 80  RHIN------ALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMIQLQ-G 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL D +  K + +S ++ +VLDEAD+ML+LGF++++  I    P+KR+ L+
Sbjct: 133 VEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKRQNLL 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   + T+ +    D V++ I +E +    I   A  V  + +   +  +++    
Sbjct: 193 FSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDARKGPLLRYLIKEQKM 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F S+        + L  +     AL  + SQ  R+ AL+  + G   V +ATD+ 
Sbjct: 253 NQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIHVLVATDLM 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +RGID+P L  VI+ EL  +P++ +HR GRTGRA   G+++ +I
Sbjct: 313 SRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLI 356


>gi|254389955|ref|ZP_05005177.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197703664|gb|EDY49476.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 501

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 187/359 (52%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL    
Sbjct: 85  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLARLA 141

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 142 QGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 202 ILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGGQRMLFS 261

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 262 ATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVVKPKDKAPVTAAIAARKG--R 319

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 320 TIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 379

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V
Sbjct: 380 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRLMEDAGV 438


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|45185939|ref|NP_983655.1| ACR253Cp [Ashbya gossypii ATCC 10895]
 gi|74694768|sp|Q75BL8|IF4A_ASHGO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|44981729|gb|AAS51479.1| ACR253Cp [Ashbya gossypii ATCC 10895]
          Length = 396

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+V+ +++Q+  + P +   DVL  AQ+G+GKT  F +A A   + E+ +     AP AL
Sbjct: 41  GFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIA-ALQRIDESIK-----APQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     V V  CIGG     +   L+ GA IVVGTPGR+ D 
Sbjct: 95  ILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +     H+K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 155 IERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQVVLLSATMPKEVLDVTD 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 215 KFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDCLSDLYDSISVTQAVIFCNTRRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              TK L +  F V A+  +L Q +R   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 275 EELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVI 334

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 335 NYDLPNNKENYIH 347


>gi|302789171|ref|XP_002976354.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
 gi|300155984|gb|EFJ22614.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
          Length = 489

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 241/464 (51%), Gaps = 32/464 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+ N+T +Q   +   L+ +DVL +A+TGSGKT+AF L  A  LL  + RF P +
Sbjct: 15  AIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAF-LVPAVELLY-HARFMPRN 72

Query: 74  APLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               L I+PTRELA+Q   V R+L   +++T  +V   +GGV  + E   L+ G +++V 
Sbjct: 73  GTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIV---MGGVKRNVEAEALKKGVNLLVS 129

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH++  KG    +L+ +V+DEAD +L++GF +D++ I+   PK+R+ ++FSAT 
Sbjct: 130 TPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKERQTVLFSATQ 189

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +  +  LAK +++K  + + +  E  + +   ++    +V    R   +   L+ +  K 
Sbjct: 190 TTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFTFLKKNLKKK 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S+  SV    ++L       + + G+  QQ+R+N      +    + + TDVAAR
Sbjct: 250 VMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGILLCTDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRR--------- 355
           G+D+P ++ +I  +   +P+  +HR GRT  G +GR    +F+ P+ +  +         
Sbjct: 310 GLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGRGRALLFLTPEELGFKRYLTMAKVP 369

Query: 356 -AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-LAKHDP 413
             E +F E  ++ V     ++   +  +  R  +D      +  +   M D   + + D 
Sbjct: 370 LNEYMFPENKIANVQSQLENLIG-KNYNLHRSARDAYRSYIMAYNSHAMKDAFNVHRLDL 428

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           + +AA F      G   P +I  +S+ S   +FR   +  K  G
Sbjct: 429 QAVAASF------GFSCPPKINNLSIDSSAAKFRKQGKERKSSG 466


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 202/382 (52%), Gaps = 13/382 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L  A   +
Sbjct: 133 YTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLP-AIVHI 191

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +L+ 
Sbjct: 192 NAQPYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELER 251

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R+ L
Sbjct: 252 GAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTL 311

Query: 184 MFSATISPAITTLAKNYQK-DAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILR- 240
           M+SAT    +  LA++  K + V +N+ S + Q   +I    ++V   ++   ++++LR 
Sbjct: 312 MWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRR 371

Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G+K  ++F  T+      T+ +    +  ++L G+  Q+ER+  L   ++GR  + +
Sbjct: 372 IMDGSK-ILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMV 430

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRA 356
           ATDVA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAG KG +  F  P    + R  
Sbjct: 431 ATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLAREL 490

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
            R+ R AN  V     P +E++
Sbjct: 491 VRVLRGANQPV----PPELESL 508


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/382 (31%), Positives = 202/382 (52%), Gaps = 13/382 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L  A   +
Sbjct: 133 YTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLP-AIVHI 191

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +L+ 
Sbjct: 192 NAQPYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIMELER 251

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R+ L
Sbjct: 252 GAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTL 311

Query: 184 MFSATISPAITTLAKNYQK-DAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILR- 240
           M+SAT    +  LA++  K + V +N+ S + Q   +I    ++V   ++   ++++LR 
Sbjct: 312 MWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSLLRR 371

Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G+K  ++F  T+      T+ +    +  ++L G+  Q+ER+  L   ++GR  + +
Sbjct: 372 IMDGSK-ILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPIMV 430

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRA 356
           ATDVA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAG KG +  F  P    + R  
Sbjct: 431 ATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLAREL 490

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
            R+ R AN  V     P +E++
Sbjct: 491 VRVLRGANQPV----PPELESL 508


>gi|110339425|gb|ABG67961.1| eukaryotic initiation factor 4A [Callinectes sapidus]
          Length = 432

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  D +  AQ+G+GKT  F +++   +  +
Sbjct: 65  NLDEALLRGIYAYGFEKPSAIQQRAILPCIRGHDAIAQAQSGTGKTATFSISILQRIDVK 124

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++         AL +APTRELA Q+ + +  L     V    CIGG ++  + R L+ G 
Sbjct: 125 SNETQ------ALILAPTRELAQQIQKVVLALGDYMNVTCHACIGGTNLREDMRRLEMGV 178

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D I  + LN  H+K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 179 QIIVGTPGRVYDMINRRVLNPKHIKMFVLDEADEMLSRGFKDQIYDVFRFLPSEVQVVLL 238

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +   + +D + + +  E      I    V V   D +   + ++      
Sbjct: 239 SATMPSDVMDVTTKFMRDPITILVKKEELTLEGIKQFYVNVEKEDWKLETLCDLYETLTI 298

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T  + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 299 TQAVIFCNTRRKVDWLTDKMHQRDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 358

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L +N EN +H
Sbjct: 359 ARGIDVQQVSLVINYDLPTNRENYIH 384


>gi|157135580|ref|XP_001656674.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157135584|ref|XP_001656676.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|94468792|gb|ABF18245.1| initiation factor EIF-4A [Aedes aegypti]
 gi|108870173|gb|EAT34398.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870175|gb|EAT34400.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 404

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 173/313 (55%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A+    L + D  +  +   AL
Sbjct: 50  GFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIAI----LQQID--TSIAECQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    G     CIGG +V  + R L+ G HIVVGTPGR+ D 
Sbjct: 104 ILAPTRELATQIQKVVIALGDYLGAQCHACIGGTNVRDDMRKLEMGCHIVVGTPGRVHDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L  SH+K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  ++ 
Sbjct: 164 ISRNVLRPSHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVILLSATMPAEVLEVST 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ +D +++ +  E      I    + V   + +   ++++        A++FC+TR  V
Sbjct: 224 HFMRDPIKILVKKEELTLEGIKQFYIDVKQENWKLGTLIDLYDTLSITQAVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T  +    F V ++ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DQLTADMTSQSFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLH 330
           + +L +  EN +H
Sbjct: 344 NYDLPTLRENYIH 356


>gi|158298823|ref|XP_318978.3| AGAP009863-PA [Anopheles gambiae str. PEST]
 gi|157014071|gb|EAA43551.3| AGAP009863-PA [Anopheles gambiae str. PEST]
          Length = 404

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 194/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A+   +  E     P     AL
Sbjct: 50  GFEKPSAIQQRAIVPCVKGSDVIAQAQSGTGKTATFSIAILQQIKTE----IPDCQ--AL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L+ G HIVVGTPGR+ D 
Sbjct: 104 ILAPTRELASQIQKVVISLGDFLKAQCHACIGGTNVRDDMRRLEQGCHIVVGTPGRVHDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  +++
Sbjct: 164 ISRNVLQPKNIKMFVLDEADEMLSRGFKDQIQDVFQKLPADVQVILLSATMPADVLEVSQ 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ ++ V++ +  E      I    V V   D +   + ++        A++FC+TR  V
Sbjct: 224 HFMRNPVKILVKKEELTLEGIRQFYVDVKYEDWKIGTLCDLYDTLSITQAVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T+ + E  F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DQLTEQMTEKTFTVSAMHGDMEQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L +  EN +HR GR GR GRKG+++  + +  +R    + +  N ++   PA
Sbjct: 344 NYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEQDKRVLADIEKHYNTTIEEMPA 398


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 130/440 (29%), Positives = 206/440 (46%), Gaps = 20/440 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +      +D++  AQTGSGKT AF L + + ++ +
Sbjct: 296 NLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRD 355

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 356 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 415

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 416 QGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 475

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 476 QRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVE 535

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 536 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 595

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G            RA 
Sbjct: 596 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG------------RAI 643

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             F   + S + +P   V +  ++D    L++  F     G        + A  D  K  
Sbjct: 644 SFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVDTRKNY 703

Query: 418 AGFLRIHRAGLCAPEEITPV 437
            G   ++ AG  + +   PV
Sbjct: 704 HGKSSLNTAGFSSTQAPNPV 723


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 498

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 174/335 (51%), Gaps = 5/335 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +      +D++  AQTG+GKT AF L +   L+             AL
Sbjct: 40  GYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPIIHRLMTTKPE---KRGVRAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R    L   T +  AV  GGV +  + R L+ G  IVV  PGRL DH
Sbjct: 97  ILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALRQGLDIVVACPGRLLDH 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    +    L+ +VLDEAD M D+GF  D+  IL + P+KR+ L+FSAT+  AI  LA 
Sbjct: 157 MNQGNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQTLLFSATMPAAIAGLAG 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
               D V V I       + +++    V+ + +   ++++L     ++ IVF  T+    
Sbjct: 217 ETLTDPVTVRIGHLAPA-ATVEHAIYPVSSAQKTPLLLHLLGEAAKESVIVFTRTKHRAK 275

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L     +   L G LSQ++R  A+   R G  +V +ATD+AARGID+  +  V++
Sbjct: 276 NLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLVATDIAARGIDVSQVAHVVN 335

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
            ++   PE   HR GRTGRA R G +  FV  ++M
Sbjct: 336 YDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDM 370


>gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 427

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL ++G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHYLLTH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  IV+GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPVAAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT+S  +  LA         V +    +    I       +  ++   +  +L
Sbjct: 192 RMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 205/417 (49%), Gaps = 42/417 (10%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++  PQ + EAL  +G    T +Q   L   L  +D++  A TGSGKT+ F  A+
Sbjct: 187 IKSFKDMLFPQGVLEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVF--AI 244

Query: 59  ASTLLA-ENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAK--TG---------- 102
            + L A E +  +P +    P  L IAP+RELA Q    +E+ YA   TG          
Sbjct: 245 PAILRAMEMEMRAPVADSEGPFCLLIAPSRELAQQTHEVVEY-YASYLTGRPSSRSRHRL 303

Query: 103 --VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
             +   +CIGG S+ R+  +++ G HIV  TPGRL   +  K   ++    + LDEAD M
Sbjct: 304 PRLRCQLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRM 363

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           +DLGF D++   LD    +R+ L+FSAT+   I   A +   + V +N+      + D+ 
Sbjct: 364 VDLGFEDEVRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNPVTINVGRAGAANLDVV 423

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                V    +   ++  L+   A   +VFCS +AS     + L        A+ G L Q
Sbjct: 424 QEVEYVKAESKLTYLLQCLQ-KTAPPVMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQ 482

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER  + ++ + G   V I TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR
Sbjct: 483 SERHKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGR 542

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            G++   I               N SV       ++AI E   QR+   P FL+ ++
Sbjct: 543 TGVATTFI---------------NKSVDETVLLDLKAILEEAGQRV---PPFLEHLE 581


>gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933]
 gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 444

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 180/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++ DEAD MLD+GF  DIE I   +  +++ L+FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVETLIXDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IV
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID
Sbjct: 254 FVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +PD+  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 314 IPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 428

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A+ 
Sbjct: 19  LVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTHQAKQ 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  DRQT--NQPRALIMAPTRELAVQIHSDAEPLTQSTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDVA
Sbjct: 257 DRAIIFANTKHRCEDIWGHLATDGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 467

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L   + A+  +  
Sbjct: 12  IVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQ-MFADAPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
           P     A+ + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  PKRV-RAIILTPTRELAVQVEENIRQ-YAKYLPLTSMAMYGGVDAAPQKKKLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPPQRQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ + + IA        ID     V    +   + ++++      A++
Sbjct: 189 SKQVRVLAKTAVENPIEIEIARNAATAPQIDQWLTTVDKDKKSALLSHLIKEQAWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRDIGAEAFHSGRSQAVREQLLADFKSGKLAFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKD 350


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 187/339 (55%), Gaps = 12/339 (3%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           VQ  ++   L  ++++V ++TGSGKT +F + L   +  E +         AL + PTRE
Sbjct: 29  VQIEVIPKLLNGQNLVVKSKTGSGKTASFAIPLCENINVEYNNIQ------ALIVVPTRE 82

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA+QV  E+  +     V  +   G   +  +  +L+   HIVV TPGR+ DHI    + 
Sbjct: 83  LALQVKDEISSIGRLRKVRCSAIFGKQPIKEQIAELKQRVHIVVATPGRIIDHINKGTIK 142

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +  +K +++DEAD+M + GF + +E IL + PK++ + +FSATI   I  + + Y  D  
Sbjct: 143 LEDIKYLIIDEADKMFNKGFVEQMEKILLNLPKEKIVGLFSATIDEEIKYICEKYIPDYS 202

Query: 206 RVNIASENRQHSDIDYRAV---LVALSDRDNAIV--NILRYHGAKNAIVFCSTRASVSRF 260
            +NI  EN+  ++   R +   ++  ++R+  I+   ++     K+ I+FC+T+  VS+ 
Sbjct: 203 VINI-EENKSDTNQRTRQIDDKIIKTNEREKYILLKELIYSENPKSVIIFCNTKEKVSKL 261

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              +++  F +  L  +LSQ+ R   ++  +  +  V +++DVA+RGI + D+ LVI+ +
Sbjct: 262 YNKMSKEGFLIRELHADLSQERRIFVIKDFKKQKFNVLVSSDVASRGIHIDDISLVINYD 321

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +  + EN +HR GRTGR    G ++ ++ +  ++  E +
Sbjct: 322 VPQDKENYIHRIGRTGRKRNSGKAITIVTEKDEKYIENI 360


>gi|268593262|ref|ZP_06127483.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
 gi|291311158|gb|EFE51611.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
          Length = 445

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/340 (34%), Positives = 185/340 (54%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS++GY   T++Q A +   +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALSDKGYQRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  + + L A   + +A   GGV+             IVV T 
Sbjct: 75  GPPRVLVVTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTMLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D + ++     R+   I    YRA    L  +   + ++L+      AI
Sbjct: 195 AIRDFAERLLEDPIEIDADPSRRERKKIQQFHYRA--DTLEHKTALLCHLLKQDEVTKAI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  +    + L E   +   L GE+ Q +R+ A++ + DG+ +V +ATDVA+RG+
Sbjct: 253 VFVRKRERLRELVQWLREAGIEPCYLEGEMPQAKRNEAVRRLVDGQVKVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ ++  V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLV 352


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 193/361 (53%), Gaps = 14/361 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +++Q   +   +  KDV+  AQ+G+GKT  F + +   + L ++D         A
Sbjct: 42  GFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDL-------QA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ +  L     V      GG ++  + + +Q +G  ++ GTPGR+ 
Sbjct: 95  LVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + +   H++ +VLDEADE+L   LGF+  I  I    P+  ++++ SAT+SP I 
Sbjct: 155 DMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQVVVVSATMSPEIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + K +  D V++ +  +      I    V V   + + + + +I         ++FC++
Sbjct: 215 EITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIYDSLTITQCVIFCNS 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L +  F V+++ G++ Q ER   +   R G++RV I+TDV ARGID+  +
Sbjct: 275 KKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSRVLISTDVWARGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            LVI+ +L    EN +HR GR+GR GRKG+++  + +    R + + +   + V  +P P
Sbjct: 335 SLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKV--KPMP 392

Query: 374 S 374
           +
Sbjct: 393 A 393


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 186 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 245

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 246 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 305

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 306 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 365

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 366 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 425

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 426 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 484

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 485 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 535


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 475

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 200/372 (53%), Gaps = 14/372 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L     A+  +  P 
Sbjct: 14  KAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRF-ADAPKIRPK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               ++ + PTRELA+QV + +   YAK   + A+ + GGV    +++ L  G  ++V T
Sbjct: 73  RV-RSIILTPTRELALQVEQNINQ-YAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FSAT+S 
Sbjct: 131 PGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFSATLSK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +  LAK    DA+ + I+ +N   + ID     V   DR +A++ ++++ +    A++F
Sbjct: 191 QVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVD-KDRKSALLSHLIKENNWAQALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  R   L   + G+    +AT V +RGID+
Sbjct: 250 IQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQRRAERLFREA 363
             LE VI+ +L    ++ +HR GRTGRAG +G ++  + ++       ++RR   +    
Sbjct: 310 DALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHIIERK 369

Query: 364 NVSVVWEPAPSV 375
           N+   +EP  +V
Sbjct: 370 NIE-GFEPKKAV 380


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 175/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 181 NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSIS----ILQQ 236

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 237 ID--TTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 294

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 295 HIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVILL 354

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I    + V   + +   + ++      
Sbjct: 355 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDLYDTLSI 414

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 415 TQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 474

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 475 ARGIDVQQVSLVINYDLPSNRENYIH 500


>gi|302811016|ref|XP_002987198.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
 gi|300145095|gb|EFJ11774.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
          Length = 493

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 241/464 (51%), Gaps = 32/464 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+ N+T +Q   +   L+ +DVL +A+TGSGKT+AF L  A  LL  + RF P +
Sbjct: 19  AIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAF-LVPAVELLY-HARFMPRN 76

Query: 74  APLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               L I+PTRELA+Q   V R+L   +++T  +V   +GGV  + E   L+ G +++V 
Sbjct: 77  GTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIV---MGGVKRNVEAEALKKGVNLLVS 133

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH++  KG    +L+ +V+DEAD +L++GF +D++ I+   PK+R+ ++FSAT 
Sbjct: 134 TPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKERQTVLFSATQ 193

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +  +  LAK +++K  + + +  E  + +   ++    +V    R   +   L+ +  K 
Sbjct: 194 TTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFTFLKKNLKKK 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S+  SV    ++L       + + G+  QQ+R+N      +    + + TDVAAR
Sbjct: 254 VMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGILLCTDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRR--------- 355
           G+D+P ++ +I  +   +P+  +HR GRT  G +GR    +F+ P+ +  +         
Sbjct: 314 GLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGRGRALLFLTPEELGFKRYLTMAKVP 373

Query: 356 -AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-LAKHDP 413
             E +F E  ++ V     ++   +  +  R  +D      +  +   M D   + + D 
Sbjct: 374 LNEYMFPENKIANVQSQLENLIG-KNYNLHRSARDAYRSYIMAYNSHAMKDAFNVHRLDL 432

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           + +AA F      G   P +I  +S+ S   +FR   +  K  G
Sbjct: 433 QAVAASF------GFSCPPKINNLSIDSSAAKFRKQGKERKSSG 470


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227]
 gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
 gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
          Length = 421

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ E L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 318 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 376

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 377 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 436

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 437 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 496

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 497 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 556

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 557 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 616

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 617 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 676

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 677 VP-PDLEKL 684


>gi|145351197|ref|XP_001419971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580204|gb|ABO98264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 575

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 184/355 (51%), Gaps = 16/355 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           ++PQ I  A+++ GY   + +Q A +   L ++DV+  A+TGSGKT AF + + + ++  
Sbjct: 161 SLPQEILRAIAQVGYEKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQL 220

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               D  + A  P AL +APTRELA Q+  E           V + +GG S+  +   L+
Sbjct: 221 PKMTDEIA-AHGPYALIMAPTRELAQQIEEETLKFAQYLDYRVGLVVGGQSIEDQGFKLR 279

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------S 176
            G  I+VGTPGR+ D I  +   +S    +VLDEAD M+D+GF   +  ++++       
Sbjct: 280 KGVEILVGTPGRIIDVIERRYTVLSQCNYIVLDEADRMIDMGFEPQVVAVMEAMGSGNLK 339

Query: 177 PKKR------RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           P+        + L      S  +  LA++Y ++   V I S  +    I    + V+ ++
Sbjct: 340 PEDEAEELDGQALEQGGPTSSNVERLARSYLRNPAVVTIGSAGKTSDLIKQEIIWVSRNE 399

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           RD+    +L  H    AIVF + + SV     +     +   ++ G  SQ +R  +L+  
Sbjct: 400 RDSKFELVLSRHPNTQAIVFVNAKRSVDAVANLCYRLGYSCASIHGGKSQDQREESLRGF 459

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + G   + +ATDVA RGID+  ++LV++ EL    EN  HR GRTGRAGRKG +V
Sbjct: 460 KAGDYDILVATDVAGRGIDVKGIDLVVNYELPHTIENYTHRIGRTGRAGRKGTAV 514


>gi|55963471|emb|CAI11913.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    D +        L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKL--SEDPY----GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLG---FRDDIEFILD 174
            +L    H+VV TPGRL DHIR    +N++ ++ +++DEAD +L+ G   F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPVKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVKELDQRFILTPEKVKDAY 234

Query: 235 IVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V++++     H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/392 (31%), Positives = 195/392 (49%), Gaps = 40/392 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I +   E G    T+VQ+A +   +   + +V +QTG+GKT AF L + STL    D
Sbjct: 11  PEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALPIISTL--SKD 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +       AL I+PTRELA Q+ ++ +         +   IGG+++  +   L+   HI
Sbjct: 69  PY----GIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASALEKNPHI 124

Query: 128 VVGTPGRLCDHIR--GKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           VV TPGR+  H+R   KG    +  +L+ +VLDE D +   G+ DD+  I+   P+KR+ 
Sbjct: 125 VVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKYLPEKRQT 184

Query: 183 LMFSATISPAI---TTLAKN---------------YQKDAVRVNIASENRQHSDIDYRAV 224
           L FSAT S  +   T + K                +  D +       +     I++  V
Sbjct: 185 LCFSATKSDQVDLLTIMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKPKIEHVKV 244

Query: 225 LVALSDRDNAIVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           LV    R+  ++ I++        K  IVF ST+ +    T +L    ++   +  ++ +
Sbjct: 245 LVQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAVMHSDMQE 304

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER   L+  R GR R+ +ATDVAARG+D+P ++ VIH     N    +HR+GRTGRAGR
Sbjct: 305 SERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIHFNPPQNAATYVHRAGRTGRAGR 364

Query: 341 KGMSV-FV------IPQNMQRRAERLFREANV 365
           +G S+ FV      I Q +++   + F E  V
Sbjct: 365 EGRSILFVSGREKKIEQEIEKEIGQQFTELKV 396


>gi|254581554|ref|XP_002496762.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
 gi|238939654|emb|CAR27829.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 203/368 (55%), Gaps = 26/368 (7%)

Query: 5   ENIPQVIGE---------ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           E + Q  GE         A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF 
Sbjct: 26  EKLSQTFGELELSQPTLKAIDKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFL 85

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGV 112
           +     L   + +F P +    + I PTRELA+Q   V REL   +++T     + IGG 
Sbjct: 86  IPAIERL--HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGA 140

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +  +E   L  G ++++ TPGRL DH++  KG    +LKA+++DEAD +L++GF +++  
Sbjct: 141 NRRQEADKLVKGVNLLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEEEMRQ 200

Query: 172 ILDSSPKK-RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           I+   P + R+ ++FSAT +  +  LA+ + +   + +N+ SE + +S ++       + 
Sbjct: 201 IIKILPNEDRQSMLFSATQTTKVEDLARISLRAGPLFINVVSE-KDNSTVEGLEQGYVVC 259

Query: 230 DRDN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           D D     + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N 
Sbjct: 260 DSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNT 319

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV 345
                +    + ++TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+
Sbjct: 320 FFEFCNAERGILVSTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGAKGKGKSL 379

Query: 346 -FVIPQNM 352
            F+ P  +
Sbjct: 380 MFLTPNEL 387


>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 442

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 187/374 (50%), Gaps = 7/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ E L    Y   T++Q   +   L  KDVL  A TGSGKT AF L +   +    
Sbjct: 31  MPELL-ETLKLLSYTTPTAIQSHTIPAVLNGKDVLGGAITGSGKTAAFALPIIQKIAQAK 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA---KTGVVVAVCIGGVSVHRERRDLQN 123
            R    +   +L + PTRELA QV       Y+   K  +      GGVS + +   L+ 
Sbjct: 90  PRAKEGNYVSSLILVPTRELAQQVADSF-MRYSQLIKPNLKTLAVYGGVSTNTQMLSLRG 148

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVV TPGRL D I    L +     +VLDEAD ML LGF +++  +L   PK ++ L
Sbjct: 149 GADIVVATPGRLIDLISSNALKLDKTTTLVLDEADRMLSLGFTEELNELLAKLPKTKQTL 208

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  L  +   + V V + S   + S +  R + V  + +   +  +++ + 
Sbjct: 209 LFSATFPEEVRELTDSLLNNPVEVQLQSS--EESTLVQRVITVNRNRKTALLAELIKDNQ 266

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F S + S +R  + L            +  Q  R+  L+  + G   V IATD+
Sbjct: 267 WQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEGFKSGEISVLIATDI 326

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++ 
Sbjct: 327 AARGIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIEKKN 386

Query: 364 NVSVVWEPAPSVEA 377
            + +  E  P  EA
Sbjct: 387 KLRLEREQIPGFEA 400


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 184/357 (51%), Gaps = 6/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +   ++ + 
Sbjct: 226 FPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQ 284

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ +  APTRELA Q+  E +       + VA   GGVS   + ++L+ G  
Sbjct: 285 PELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE 344

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FS
Sbjct: 345 IVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 404

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+   +  LA+    D +RV +      + DI  + V V  SD +     + +  G   
Sbjct: 405 ATMPYKVERLAREILTDPIRVTVGQVGSANEDIK-QVVNVLPSDAEKMPWLLEKLPGMID 463

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   V +ATDV
Sbjct: 464 DGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDV 523

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
           AARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R A  L
Sbjct: 524 AARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGEL 580


>gi|73996616|ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 1 [Canis familiaris]
          Length = 801

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 184/372 (49%), Gaps = 48/372 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+                   
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVA--------------- 501

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
               IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 502 ----IVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 557

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 558 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 617

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 618 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 677

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 678 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTG 737

Query: 337 RAGRKGMSVFVI 348
           RAG+ G+++  +
Sbjct: 738 RAGKSGVAITFL 749


>gi|255726906|ref|XP_002548379.1| ATP-dependent rRNA helicase SPB4 [Candida tropicalis MYA-3404]
 gi|240134303|gb|EER33858.1| ATP-dependent rRNA helicase SPB4 [Candida tropicalis MYA-3404]
          Length = 553

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 202/382 (52%), Gaps = 41/382 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAEND 67
           I EA+S  GY  +T VQ + +      KDV+V A TGSGKT+++ + +    ST L + D
Sbjct: 21  IKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSYVIPVLQKISTRLYKKD 80

Query: 68  RFSPASAP--------LALAIAPTRELAVQV----GRELEWLYAK-TGVVVAVCIGGVSV 114
                  P        L++ +APTRELA Q+       L++L +    +   + +G +  
Sbjct: 81  --DDGDLPEKVKRGHMLSIVLAPTRELANQIQSVFDNVLQYLPSDYKSINTQLLVGSMGT 138

Query: 115 HRERRD--LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            RE  D  L+N   I++GTPGR+ D +  + +  + L+  +LDEAD++LD  F  D+  I
Sbjct: 139 VREDIDNFLKNQPQILIGTPGRILDFLGSQYVKTNSLEIAILDEADKLLDCSFETDVVNI 198

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLV 226
           L   PK+RR  +FSAT+S A  T+ +    + V+V + S+N     ++         +++
Sbjct: 199 LRKLPKQRRTGLFSATLSSAGDTIFRTGMNNPVKVQVKSKNSLGEQVNAPKSLQLSYIMI 258

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA-----------EHLFQVVALS 275
               +   ++++L  +  K AIV+  T  SV  F ++ +           E   +  +L 
Sbjct: 259 QPEFKITTLLDMLSKYQYKKAIVYFPTCTSVKHFYQIFSKIPFNKNDNDEEEDLKFFSLH 318

Query: 276 GELSQQERSNALQMMRDGRAR----VCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           G+L+ + R   L+   +G A     V +ATDVAARGID+PD++LVI  +  ++P+  LHR
Sbjct: 319 GQLNTKARLRTLEKFTEGDANTNKCVLMATDVAARGIDIPDVDLVIQIDPPTDPDVFLHR 378

Query: 332 SGRTGRAGRKGMSVFVIPQNMQ 353
            GRTGRA + G ++ ++ ++ Q
Sbjct: 379 CGRTGRANKVGRAILMLNEDSQ 400


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 181/338 (53%), Gaps = 12/338 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G   L  +Q    +     KDV+V A+TG+GKT +FG+ L   L  +    +   AP  
Sbjct: 239 KGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRV 298

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + + PTRELA+Q+  EL  +  K  + VA   GG    ++   +++G   +VGTPGR+ D
Sbjct: 299 IILTPTRELAIQITNELRSMTKK--LKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRIRD 356

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATISPA 192
            ++   L+++ LK VVLDE D M D+GF + +E IL       P++  + L+FSAT    
Sbjct: 357 LVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDW 416

Query: 193 ITTLAKNY-QKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILR-YHGAK-NA 247
           +  +AK Y +K   +V++     Q + I  ++ A+    S +   + +I++ Y G+    
Sbjct: 417 MYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAAVLGDIVQVYSGSHGKT 476

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC ++      +            L G+L Q+ER   L+  R G   V IAT+VAARG
Sbjct: 477 IIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARG 536

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 537 LDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 574


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY + T +Q   +   L  ++++ +AQTG+GKT +F L +   L     +  
Sbjct: 12  IVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPILQLL--SQSQTQ 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELAVQV   +  LY K   + ++ + GGV    +R+ L +G  I+V
Sbjct: 70  RKKRIRALILTPTRELAVQVEANIA-LYGKHLALTSMAMYGGVDAKPQRQRLLDGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   L  +VLDEAD MLD+GF +DI+ I+D  P  R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK      V +++ +       I+     V    +   + ++++ +    A++
Sbjct: 189 SHQVKALAKTAIDKPVEISVIANTDSKPKIEQWLTTVDKDKKSALLSHLIKENSWHQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +       + G  SQ+ R   L   + G   + IAT VAARG+D
Sbjct: 249 FIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLLIATGVAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L LVI+ +L    ++ +HR GRTGRAG  G +V ++ ++
Sbjct: 309 IDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKD 350


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|238794287|ref|ZP_04637900.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
 gi|238726371|gb|EEQ17912.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
          Length = 428

 Score =  177 bits (450), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 183/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVI-EALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 181/342 (52%), Gaps = 11/342 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAP 75
           GY   T VQ+  +      +D++  AQTGSGKT AF L +   L+ +     +FS    P
Sbjct: 220 GYTKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMTDGVAASKFSEVQEP 279

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            A+ +APTREL  Q+  E       T V   V  GG +     R++  G +++ GTPGRL
Sbjct: 280 EAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTNTGYTIREVLKGCNVLCGTPGRL 339

Query: 136 CDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATIS 190
            D I RGK + +S L+ +VLDEAD MLD+GF  D+  ++ S    S + R+ L+FSAT  
Sbjct: 340 LDIIGRGK-VGLSKLRYLVLDEADRMLDMGFEPDMRKLVASPGMPSKEDRQTLLFSATYP 398

Query: 191 PAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I  LA ++ K D + + +       SD++   + V    +   ++ +LR  G +  +V
Sbjct: 399 EDIQRLAADFLKVDYIFLAVGVVGGACSDVEQSIIQVTQFSKREQLLELLRTTGNERTMV 458

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAARG+D
Sbjct: 459 FVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALSDFRTGQCPVLVATSVAARGLD 518

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +  ++ V++ +L S+ +  +HR GRTGR G  G +V F  P+
Sbjct: 519 IEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFDPE 560


>gi|149909181|ref|ZP_01897838.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149807705|gb|EDM67651.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 182/343 (53%), Gaps = 14/343 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS------TL 62
           ++I +A++E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L L        TL
Sbjct: 38  KLITQAVAELGYEQPTPIQQKAIPAILSGKNLIAAAQTGTGKTASFVLPLLQMFSHKHTL 97

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A+  R        AL + PTRELA+QV   +E       +      GGV +  +++ L 
Sbjct: 98  RAKRIR--------ALILTPTRELAIQVAENVEQYGKHLHLTSMAMYGGVDMDPQKQRLI 149

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D    + L+   L+ +V+DEAD MLD+GF +DI  I++  P++R+ 
Sbjct: 150 EGVDILVATPGRLLDMAHQRALHFDELEVLVIDEADRMLDMGFVNDINKIIERLPQERQN 209

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+S  +  LAK     A+ ++I  EN    +ID    +V    +   + +++  +
Sbjct: 210 LLFSATLSNKVRFLAKTAINYALEISIEPENTTAPEIDQWLTVVDKDVKSALLSHMIIEN 269

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++F  T+   ++    L +   +  +     SQ  R   L   + G     +AT 
Sbjct: 270 DWKQALIFIETKRGAAKLVSQLEKRGIKAESFHSGRSQAMREQLLAEFKAGELSFLVATG 329

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VA+RGID+ DL+ V++ +L     + +HR GRTGRAG  G ++
Sbjct: 330 VASRGIDIDDLDRVVNYDLPEEQADYVHRIGRTGRAGASGEAI 372


>gi|328912646|gb|AEB64242.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 447

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 11/346 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+       LL  
Sbjct: 19  NLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAY-------LLPI 71

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLY--AKTGVVVAVC-IGGVSVHRERRDL 121
            +R  P S  + A+  APTRELA Q+ +E   +   A+   +   C IGG    +    L
Sbjct: 72  LNRIDPGSDTVQAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLDLGF +D+++I    P++ +
Sbjct: 132 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++    ++  +      I++  V     D+D  + +++  
Sbjct: 192 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFDMMSN 251

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF +T+ +     K L E   ++  L G L+ +ER   ++ + D      IAT
Sbjct: 252 LNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDLEFTYVIAT 311

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 312 DLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTI 357


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/370 (31%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E +  + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 90  NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 148

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y++   + + CI GG     + RDL+ G
Sbjct: 149 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 208 VEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 267

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ K+ V +NI + E   + +I     +    ++D+ ++ ++    
Sbjct: 268 WSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIM 327

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 328 SEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 387

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +  
Sbjct: 388 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLI 447

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 448 SVLREANQAI 457


>gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 423

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 182/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-N 66
           P+VI EAL++ G+ N T +Q + L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 13  PKVI-EALNKNGFHNCTPIQASTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHYLLTHPT 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +     + P AL +APTRELAVQ+  + + L A TG+ + +  GG     +   LQ+G  
Sbjct: 72  NSERQVNQPRALIMAPTRELAVQIYTDAKELAAITGLKMGLAYGGDGYDEQLHVLQSGVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  L+
Sbjct: 132 ILIGTTGRLIDYAKQGHIHLGRIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNLL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA         + +  + +    I       +  ++   +  ++     
Sbjct: 192 FSATLSYRVQELAFEQMNQPEYIEVEPQQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 252 ERCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 352


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 184/357 (51%), Gaps = 6/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +   ++ + 
Sbjct: 152 FPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQ 210

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ +  APTRELA Q+  E +       + VA   GGVS   + ++L+ G  
Sbjct: 211 PELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE 270

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FS
Sbjct: 271 IVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 330

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+   +  LA+    D +RV +      + DI  + V V  SD +     + +  G   
Sbjct: 331 ATMPYKVERLAREILTDPIRVTVGQVGSANEDIK-QVVNVLPSDAEKMPWLLEKLPGMID 389

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   V +ATDV
Sbjct: 390 DGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYHVLVATDV 449

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
           AARG+D+  ++ V++ +++   +  +HR GRTGRAG K G +  +I Q   R A  L
Sbjct: 450 AARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRFAGEL 506


>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 189/360 (52%), Gaps = 16/360 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    D +        L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKL--SEDPY----GVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLG---FRDDIEFILD 174
            +L    H+VV TPGRL DHIR    +N++ ++ +++DEAD +L+ G   F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAY 234

Query: 235 IVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V++++     H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354


>gi|301122021|ref|XP_002908737.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262099499|gb|EEY57551.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 518

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 187/373 (50%), Gaps = 46/373 (12%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  + T VQ   + P L  +DV+  AQTGSGKT AF L +  TL    D +     P AL
Sbjct: 71  GIRHPTPVQAHCIPPILAGRDVIGCAQTGSGKTAAFALPILHTL--SKDPY----GPYAL 124

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +     +   V  AV +GGV + ++   LQ   HI+V TPGR  DH
Sbjct: 125 VLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLTLQQRPHIIVATPGRFRDH 184

Query: 139 I-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           + R    NIS +K VVLDEAD +LD+ F  D+ FI D  P KR+ L+FSAT++  +  L 
Sbjct: 185 LLRADPPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPTKRQTLLFSATMTANLDRLE 244

Query: 198 KN-YQKDAVR------VNIASENRQ-------HSDIDYRAVLVALSD------------- 230
           +     DA R      V   +  +Q          + Y   L+ + D             
Sbjct: 245 QTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYLMKMLDPNEEEEEESNRKV 304

Query: 231 -------RDNAIVNILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
                  +D  +  +L    +     ++ ++F +T        ++  E   + V L   L
Sbjct: 305 TKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELVGEIGNELGTKCVTLHSML 364

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ  R  AL   + G + + I+TDVA+RG+D+P++++V++ +L  + ++ +HR GRT RA
Sbjct: 365 SQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFDLPRDADDYIHRVGRTARA 424

Query: 339 GRKGMSVFVIPQN 351
           GR G ++ ++ Q+
Sbjct: 425 GRSGQAISLVTQH 437


>gi|3122189|sp|Q26696|DDX17_TRYBB RecName: Full=Putative DEAD-box RNA helicase HEL64
 gi|1166504|gb|AAC46964.1| HEL64 [Trypanosoma brucei]
          Length = 568

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 179/344 (52%), Gaps = 5/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +  A   +A  
Sbjct: 109 VPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGF-MVPALAHIAVQ 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           +       P+ + +APTRELA Q+  E + +    G V   C+ GG     +   L+ G 
Sbjct: 168 EPLRSGDGPMVVVLAPTRELAQQIEEETKKVIP--GDVYCGCVYGGAPKGPQLGLLRRGV 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ +MF
Sbjct: 226 HILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    I  LA  +QK  +R+++ S   Q + D+  R +L     + + +  +++ H  
Sbjct: 286 SATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHRE 345

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R       +ATDVA
Sbjct: 346 ERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  LE VI+ +     ++ +HR GRTGRAG +G  V++I
Sbjct: 406 ARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLI 449


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|313157865|gb|EFR57271.1| DEAD/DEAH box helicase [Alistipes sp. HGB5]
          Length = 502

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 176/324 (54%), Gaps = 7/324 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  +  +T VQE  +   L  +D++  AQTG+GKT A+ L L + LL E +   
Sbjct: 12  ILDGLYDMNFQEMTPVQEHTIPVILEGRDIIGCAQTGTGKTAAYTLPLLNRLLLEGNE-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHI 127
             +   ++ I PTRELA Q+ ++ +       +   V  GG        ++R +  G+ +
Sbjct: 70  -DNVIKSVIIVPTRELAQQIDQQFQGFSYYLPISTTVVYGGGDGKGWDVQKRGMLMGSDV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGR+  HI+  G+++SH++ ++LDEAD MLD+GF +DI  I+   PK+R+ +MFSA
Sbjct: 129 VIATPGRMISHIQNSGIDLSHVECLILDEADRMLDMGFSEDIMKIVSYMPKERQTIMFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ P I  LAK   ++   VNIA  ++ +  ID  A +   + +   I  +         
Sbjct: 189 TLPPKIRELAKTILRNPAEVNIAI-SKPNEAIDQSAYVCYENQKLGIIREMFAEPTESKT 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F S++  V      L      V A+  +L Q +R   +   ++ +  + +ATD+ ARG
Sbjct: 248 IIFSSSKMKVKELAHTLKRMKLNVAAMHSDLEQAQREEVMLDFKNNKVSILVATDIVARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHR 331
           ID+ D+ LVI+ ++  +PE+ +HR
Sbjct: 308 IDIEDIGLVINYDVPHDPEDYIHR 331


>gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 469

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 175/321 (54%), Gaps = 5/321 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +++ GY   T +Q + +   L  +D++  AQTG+GKT +F L +   L     R   A
Sbjct: 14  KTVTDAGYTEPTPIQASAIPSVLMMRDIIGIAQTGTGKTASFVLPMIDILAHGRSR---A 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P +L + PTRELA QV    E   A   + +A+ IGGVS+  + + L+ G  +++ TP
Sbjct: 71  RMPRSLILEPTRELAAQVAENFEKYGANHKLSMALLIGGVSMGDQIKALEKGVDVLIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  +   + ++    +V+DEAD MLD+GF  DIE I    PK+R+ L+FSAT+ P 
Sbjct: 131 GRLMDLFQRGNILLTGCSMLVIDEADRMLDMGFIPDIEEICTKLPKQRQTLLFSATMPPP 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKNAIVF 250
           I  LA  + ++   + +A     + +I    V VA    ++   +  +L+    + AI+F
Sbjct: 191 IKKLADKFLENPKMIEVARPASTNINITQFVVPVAPQSFEKRKRLRQLLKQDEVRTAIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ + +V    K L +H F+   + G++ Q +R   L + + G   + +A+DVAARG+D+
Sbjct: 251 CNRKTTVRELNKSLKQHGFRSGEIHGDMEQPQRLAELDLFKRGEVNILVASDVAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHR 331
             +  V + +   +P++ +HR
Sbjct: 311 KGVSHVFNFDAPWHPDDYVHR 331


>gi|319943535|ref|ZP_08017817.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
 gi|319743350|gb|EFV95755.1| DEAD/DEAH box helicase family protein [Lautropia mirabilis ATCC
           51599]
          Length = 872

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 128/363 (35%), Positives = 179/363 (49%), Gaps = 27/363 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFS- 70
           +AL     ++ + VQ   +   L   D++ SA TG+GKT AF L AL    L   +R + 
Sbjct: 161 QALQRLDIIHPSPVQAQAIPVLLAGNDLVASAPTGTGKTAAFLLPALQGVALNAQERAAE 220

Query: 71  -----------------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
                                  PA  P  L + PTRELA QV R    L         V
Sbjct: 221 HHDAGDDDEDHRGKRGKGRRPARPAFGPSVLVLTPTRELAQQVTRTSHALSRLLPRTSTV 280

Query: 108 CI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           CI GG S   + R L     ++V TPGRL D +    +++S LK +VLDEAD MLD+GF 
Sbjct: 281 CITGGSSYFHQARALAMPYEVLVATPGRLIDQLENGKIDLSRLKMLVLDEADRMLDMGFS 340

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           +D+  I +  P +R+ + F+AT+S  +  LA    KD   + +       + ID   V V
Sbjct: 341 EDVFRIAEMLPTERQTVCFTATVSHDVRNLADKLLKDPQWLTVERSEEALTPIDDHVVYV 400

Query: 227 -ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                R   +   L   G   AIVF +T+      ++ L    F V AL G+++Q+ER+ 
Sbjct: 401 DNPGHRGQLLRACLNDTGLGQAIVFTATKRQAEELSEELQGEGFAVDALHGDMNQRERTR 460

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL  +R G  +V IATDVAARGID+  L  VI+ EL    E+ +HR GRTGRAG  G ++
Sbjct: 461 ALNRLRQGECQVLIATDVAARGIDVSSLTHVINYELPRVAEDYVHRIGRTGRAGASGQAI 520

Query: 346 FVI 348
             +
Sbjct: 521 SFV 523


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 198/376 (52%), Gaps = 16/376 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKK- 179
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D    S+PK  
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRVSTPKNP 277

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ 
Sbjct: 278 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR 337

Query: 238 ILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+
Sbjct: 338 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 397

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 398 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 457

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 458 QVSDLISVLREANQAI 473


>gi|320163650|gb|EFW40549.1| eukaryotic translation initiation factor 4A isoform 1B [Capsaspora
           owczarzaki ATCC 30864]
          Length = 419

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 171/315 (54%), Gaps = 11/315 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++  ++    D   P     AL
Sbjct: 65  GFEKPSAIQQRAILPAIKGHDVIAQAQSGTGKTATFSISVLQSI----DTSIPHCQ--AL 118

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + + LQNGAHIVVGTPGR+ D 
Sbjct: 119 ILAPTRELAQQIQKVVIALGDYMNANCHACIGGTNVQEDMKKLQNGAHIVVGTPGRVQDM 178

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L    +K  VLDEADEML  GF+D I  +    P   ++++ SAT+   +  +  
Sbjct: 179 INRRALRTDRIKMFVLDEADEMLSRGFKDQIYDVFRLMPPTIQVVLLSATMPADVLEVTT 238

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
           ++ ++ +R+ +  E      I  R   +A+   +   + + ++        A++F +TR 
Sbjct: 239 HFMRNPIRILVKREELTLDGI--RQFYIAVDKEEWKLDTLCDLYETLNVTQAVIFTNTRR 296

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + L
Sbjct: 297 KVDWLTEKMHAKDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSL 356

Query: 316 VIHAELSSNPENLLH 330
           VI+ +L +N EN +H
Sbjct: 357 VINYDLPTNRENYIH 371


>gi|157107875|ref|XP_001649978.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108868632|gb|EAT32857.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 526

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 176/351 (50%), Gaps = 14/351 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   + + G    T +QEA +   L  +D + +A+TGSGKT AF L +   L  E     
Sbjct: 18  IANQMDKLGLRRPTPIQEACIPRILDGQDCIGAAKTGSGKTFAFALPILQRLSEE----- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             ++  AL + PT ELA Q+  +         V V V  GG     E + LQ+  HIVV 
Sbjct: 73  -PTSNFALVLTPTHELAYQIAEQFSVAGQPMSVKVCVITGGTDQLLEAQRLQSRPHIVVA 131

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            PGRL  H+ G    +   ++ +V+DEAD +L   F +D+  I    PKKR+ L FSAT+
Sbjct: 132 MPGRLASHLTGCNTYSFRAMQFLVVDEADRVLSGSFDEDLAAIDSFLPKKRQNLFFSATL 191

Query: 190 SPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
              +          DA   +  SE      +D R +L A  DRD  ++  LR     N  
Sbjct: 192 KEFMRENSVFPIGADAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLRKFKEDNEE 251

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +++      +  L    F  V L G L Q+ER  AL   +    RV IATDVA
Sbjct: 252 ASVMIFTNSKKDCQVLSMTLNTIGFDNVCLHGFLRQKERVAALNRFKSKHVRVLIATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM--SVFVIPQNMQ 353
           +RG+D+P+++LV++  L   P   +HR GRT RAGRKG+  S+F  P++++
Sbjct: 312 SRGLDIPNVQLVLNHRLPKIPNEYIHRVGRTARAGRKGLAISIFRFPRDLE 362


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 180/332 (54%), Gaps = 8/332 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q+  L P L+ +DV+  AQ+G+GKT    +++   +   + +         L ++P+
Sbjct: 1   SEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQ------VLVLSPS 54

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q  + ++ + A T +    CIGG S+  + + L+ G H V GTPGR+ D I+   
Sbjct: 55  RELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGS 114

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K +VLDE+DEML  G +D I  +  + P   ++ + SAT+   I  + + +  D
Sbjct: 115 LQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTD 174

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
            VR+ +  +      I    V V   + + + + ++        AI+FC+TR  V   T+
Sbjct: 175 PVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTE 234

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            +    F V ++ G+  Q+ER + +   R  ++RV IA+DV ARGID+  +  VI+ ++ 
Sbjct: 235 KMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIP 294

Query: 323 SNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +NPE  +HR GR GR GR+G+++ FV   +M+
Sbjct: 295 NNPELYIHRIGRAGRFGREGVAINFVKSSDMK 326


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 184/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P S P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGS-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|228939265|ref|ZP_04101858.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972144|ref|ZP_04132760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978757|ref|ZP_04139128.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228781018|gb|EEM29225.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228787628|gb|EEM35591.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820460|gb|EEM66492.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939841|gb|AEA15737.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 389

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|169603339|ref|XP_001795091.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
 gi|118593422|sp|Q0UU86|IF4A_PHANO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|111067318|gb|EAT88438.1| hypothetical protein SNOG_04678 [Phaeosphaeria nodorum SN15]
          Length = 396

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +   STL   +   S   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSI---STLQKID---SNVKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   D + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|311744584|ref|ZP_07718384.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
 gi|311312203|gb|EFQ82120.1| ATP-dependent RNA helicase RhlE [Aeromicrobium marinum DSM 15272]
          Length = 413

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 182/349 (52%), Gaps = 6/349 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL+ R     T +Q+A++   L   DVL  A+TGSGKT+AFGL +   L   
Sbjct: 17  DLPRPVLSALASRQLDTPTPIQDAVIPDALAGHDVLGKARTGSGKTLAFGLPVLVRLSGG 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA QV   L     +  + +A+  GG  ++R+   +  G 
Sbjct: 77  QRR---RKAPRGLILLPTRELATQVRDALVPFADRLNLSMALVYGGTPINRQISAVTAGV 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D +  + L +  ++ + LDEAD + DLGF   I+ IL  +P+  + L+ 
Sbjct: 134 DLVIATPGRLGDLLERRALTLDAIEVIALDEADHLCDLGFYKPIDAILAKTPQGAQKLLL 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +     R  + S     +D+ +  V+    DR     +++   G  
Sbjct: 194 SATLDGDVDRLVRRHLPVHRRHEVDSAEDAPADMTHHLVVTRREDRVRVARDLI--AGED 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+    R  K L+      V L G+L+Q +R   L   R+G A V +ATDVAA
Sbjct: 252 RSIVFTRTKHGARRLAKQLSTAGLTAVDLHGDLNQNQRERNLARFRNGTADVIVATDVAA 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGI +  + LV+H +  +  +   HRSGRT RAG  G+ V    P++++
Sbjct: 312 RGIHVDGIGLVVHYDPPAEHKAFTHRSGRTARAGESGIVVTLATPEDLR 360


>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
 gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
          Length = 563

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 216/408 (52%), Gaps = 21/408 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S+  + + T +Q+A +   L  KDV   A TG+GKT AF L +   LL  
Sbjct: 2   NLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLL-- 59

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L +APTRELAVQV +    L   T V +++  GG+ +  +   L+ 
Sbjct: 60  ---YKPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRL 116

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  +V+ TPGRL DH+      ++  ++ ++LDEAD MLD  F + +  I+    +KR+ 
Sbjct: 117 GPDVVIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQT 176

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN------AIV 236
           ++FSAT+S  +  LA    ++ V++ + +EN   +D+ +      +  R N      AI+
Sbjct: 177 MLFSATMSDQVKDLAAVSLENPVKLFV-NEN---TDVAFNLRQEFIRIRPNREGDREAII 232

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +H   + IVF  T+    R   +L      V  L G LSQ +R   L+  +D    
Sbjct: 233 AARTFHD--HCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVD 290

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARG+D+  ++ VI+  + S  ++ +HR GRT RAG+ G +V ++ +  +R  
Sbjct: 291 VLLATDLAARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYL 350

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
           + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 351 KDVVKNARNPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEM 398


>gi|152032523|sp|A4R8B5|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 587

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 203/356 (57%), Gaps = 15/356 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 118 NLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEML--R 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + +F P +    + ++PTRELA+Q   V R+L   +++T     + IGG +   E   L 
Sbjct: 176 SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQT---YGIVIGGANRRAEAEKLS 232

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G ++++ TPGRL DH++       +L+++V+DEAD +L++GF D++  I+   PK+R+ 
Sbjct: 233 KGVNLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQS 292

Query: 183 LMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NI 238
           ++FSAT +  +  LA+ + +   + +N+  E +++S ++   +  +V  +D+   ++ + 
Sbjct: 293 MLFSATQTTKVEDLARVSLRPGPLYLNV-DEEKEYSTVEGLEQGYVVCEADKRFILLFSF 351

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    K  IVF S+  SV  + ++L     QV+ L G+  QQ+R+N      +      
Sbjct: 352 LQKMKKKKIIVFFSSCNSVKYYAELLNYIDCQVLDLHGKQKQQKRTNTFFEFCNADRGTL 411

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV-FVIPQNM 352
           I TDVAARG+D+P ++ ++  +   +P + +HR GRT R   +KG S+ F++P  +
Sbjct: 412 ICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTNKKGRSLMFLLPSEV 467


>gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/339 (33%), Positives = 183/339 (53%), Gaps = 12/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+    +   T +QE ++   LR + V+  +QTG+GKT A+ L +         R  
Sbjct: 11  IIEAIEHLKFHKPTPIQERVIPAVLRGESVIGQSQTGTGKTHAYLLPIIQ-------RID 63

Query: 71  PASAPL-ALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
           P  A + A+  APTRELA Q+  E   +         + A C +GG    R    L+   
Sbjct: 64  PRVAEVQAVITAPTRELATQIYHEVLKITKFCPNDHRITARCFVGGTDKLRSIEKLKTQP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+GTPGR+ D +R + L +   + +V+DEAD MLD+GF  D++ +    P+  +ML+F
Sbjct: 124 HLVIGTPGRIDDLVREQALFVHTARMLVVDEADVMLDMGFIADVDRVAGRMPEDLQMLVF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y +    ++IA +      I++  + +   DR   + ++L  +   
Sbjct: 184 SATIPEKLKPFLKKYMEHPTHIHIAPKQIAAPTIEHILIPLRHRDRLQLLHDVLVSYNPY 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +TR +       L +   +V  L G+LS +ER   ++ +RD + +  +ATD+AA
Sbjct: 244 LALVFVNTRKTADEVANGLIDKGLKVGVLHGDLSPRERKKMMKAIRDLQFQYIVATDLAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           RGID+  +  VI+ EL S+ +  +HR+GRTGRAG KG++
Sbjct: 304 RGIDIEGVSHVINYELPSDLDFYVHRAGRTGRAGYKGVA 342


>gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
 gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 418

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 193/403 (47%), Gaps = 34/403 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL    +   T +Q+  + P L  +DV+  A TG+GKT A+ L L        +R +   
Sbjct: 17  ALRRARFTQPTPIQQQAIPPALAGRDVIGCAATGTGKTAAYVLPLV-------ERLAGKK 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             LAL +APTREL  Q+   + +      +  A  IGG  +  +   L+     V+ TPG
Sbjct: 70  GTLALVLAPTRELVQQIAEPVRFFAEPRRLTHATVIGGEDMGAQVNALKTLPSFVIATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +   HL+A+VLDEAD MLD+GF   +E I+   P++R+ L+FSAT+ P +
Sbjct: 130 RLVDLMENTAIRFPHLEALVLDEADRMLDMGFLPQLERIVAHLPRRRQTLLFSATLGPDV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           T  AK+     VR+ +          + R   +   ++   ++ +L    A  A+VF   
Sbjct: 190 TRFAKSRLYKPVRLEVTRSGTPAERAEQRLYFLRPEEKTPLLLTLLAQDSA-TALVFTRA 248

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V +  + L     +   L  + +Q +R  A++  R+G  R  +ATD+AARG+D+ D+
Sbjct: 249 KERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVATDIAARGLDVEDV 308

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQ--RRAERLFREANVSVVWE 370
             VI+ +L    E+ +HR GRT RA   G+ S F   +  Q   R E L R         
Sbjct: 309 GHVINYDLPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIEHLMRSE------- 361

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             P V+  RE        DP+F ++ +         L A+ DP
Sbjct: 362 -IPRVQVPRE--------DPVFKEAWEA-------FLAAQKDP 388


>gi|291456631|ref|ZP_06596021.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
           20213]
 gi|291381908|gb|EFE89426.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
           20213]
          Length = 675

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 138/423 (32%), Positives = 199/423 (47%), Gaps = 39/423 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P ++   L+  G      +Q   L   L  +DVL   +TGSGKT+AF + L + L    
Sbjct: 33  VPGLLVRVLAADGKKTAFPIQADTLPDSLAGRDVLGRGRTGSGKTLAFSIPLVTRLGSYD 92

Query: 63  ---------------------LAE--NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
                                L E  +D F P   P  L +APTRELA Q+   L  L  
Sbjct: 93  SLGQTAMKEFRDEIKRRKKASLEERRSDDFLPH--PRGLVLAPTRELANQINDVLMPLAH 150

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             G+      GGV    + RDL+ GA IVV  PGRL D +R K L +S ++ VV+DEADE
Sbjct: 151 AFGMNTTTIYGGVKYIHQVRDLKAGADIVVACPGRLEDLLRQKALTLSSVEVVVIDEADE 210

Query: 160 MLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           M D+GF   ++ +L+  SP  + ML FSAT+   +  +   +  D  +V+         D
Sbjct: 211 MADMGFLPPVKRLLEQISPNAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPD 268

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +    V        + +V  L   G    I+F  T+    +  K L ++      L G L
Sbjct: 269 LMTHHVFETTRGDKHELVRTL-ASGTGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNL 327

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ +R   L     G  RV +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RA
Sbjct: 328 SQNQRDRNLAAFDSGDVRVMVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARA 387

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSV----VWEPAPSVEAIRERDAQRILQDPLFLD 394
           G+ G  V ++    +R   RL  +A +      V   +P V  +    A+R+  D   LD
Sbjct: 388 GKAGDVVTLVLPEQRRETRRLLNQAGIKTKMIEVTHDSPEVLELVGDRAERV--DGWSLD 445

Query: 395 SIQ 397
             Q
Sbjct: 446 KSQ 448


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 184/348 (52%), Gaps = 5/348 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE  + P+ + E +   G+   T +Q       L  +D++  A+TGSGKT+A+ L  
Sbjct: 108 VKTFEEASFPEYVLEEVLRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAY-LLP 166

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   +           P+ L +APTRELAVQ+ +E +   A + +   V  GG     + 
Sbjct: 167 AVVHINAQPYLQSGDGPIVLVLAPTRELAVQIQQECQRFGASSRIKNTVVYGGAPKGPQA 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 227 RDLRGGVEIVIATPGRLIDMLDSRITNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    +  +A+++ KD  +V I S + + + +I     +V    +   +  
Sbjct: 287 DRQTLLWSATWPKEVQAIARDFLKDPYQVIIGSPDLKANHNIRQVVEMVEGFAKYPRLRK 346

Query: 238 ILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L      +  ++F  T+       + L    +  + L G+ SQQER   LQ  ++G   
Sbjct: 347 LLDGEMDGRRILIFVETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHP 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           + +ATDVAARG+D+ D+++V++ ++    E+ +HR GRTGRAG  G +
Sbjct: 407 IMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGATGTA 454


>gi|21465183|gb|AAM54703.1| vasa-like [Sparus aurata]
          Length = 395

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 173/329 (52%), Gaps = 11/329 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  A TGSG T AF L +   LLA+      FS    P A+ +APTREL  Q+  E    
Sbjct: 1   MACAHTGSGLTAAFLLPILQQLLADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GGVS   + R++  G +++ GTPGRL D I RGK + ++ L+  VLDE
Sbjct: 61  AYGTCVRPVVVYGGVSTGHQIREICRGCNVLCGTPGRLLDMIGRGK-IGLTKLRYFVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS 211
           AD MLD+GF  D+  ++ S    S + R+ LMFSAT    I  +A ++ K D + + +  
Sbjct: 120 ADRMLDMGFEPDMRRLVGSPGMPSKENRQTLMFSATYPDDIQRMAADFLKTDYLFLAVGV 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                SD++   V V    +   ++++L+  G +  +VF  T+         L +     
Sbjct: 180 VGAACSDVEQTFVQVTKFSKREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPT 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R G+  V +AT VAARG+D+PD++ V++ +L    +  +HR
Sbjct: 240 TSIHGDREQREREQALADFRSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKEIDEYVHR 299

Query: 332 SGRTGRAGRKGMSV-FVIPQNMQRRAERL 359
            GRTGR G  G +V F  P N  + A  L
Sbjct: 300 IGRTGRCGNTGRAVSFYDPDNDAQLARSL 328


>gi|329938804|ref|ZP_08288200.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302295|gb|EGG46187.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 673

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 190/361 (52%), Gaps = 7/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
            +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL ALA+   A
Sbjct: 38  GLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPALATLAGA 97

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             ++  P     A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G
Sbjct: 98  RTEKHKP----RAVIMTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERG 153

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + ++
Sbjct: 154 VDVLVATPGRLRDLINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQIPAGGQRML 213

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I TL   Y  + V   + +     + + +  ++V   D+      I    G 
Sbjct: 214 FSATMENEIKTLVDRYLNNPVHHEVDAAQGAVTTMSHHILIVKPKDKAPVTAAIASRKG- 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVA
Sbjct: 273 -RTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATDVA 331

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A 
Sbjct: 332 ARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAG 391

Query: 365 V 365
           V
Sbjct: 392 V 392


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 182/346 (52%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A   +   +   +V  +
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHAD--SNEHKIKLLVRFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 181/354 (51%), Gaps = 12/354 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I    P
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSCPP 366

Query: 178 ---KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   
Sbjct: 367 LPQGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 426

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+
Sbjct: 427 LLECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 485

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 539


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/379 (32%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ +AL + GY  +T +Q+  +    +  D+L +AQTG+GKT AF L +  +++ +  
Sbjct: 10  PEIV-QALEQCGYQKMTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPMLQSMVDKPQ 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           + S       L +APTRELA QV   +   +       AV  GGV +  + R L+ G  I
Sbjct: 69  QRSRRHV-RGLILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQLEAGVDI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL + +    ++++ ++ +VLDEAD MLD+GF  DI+ I D      + ++FSA
Sbjct: 128 LVATPGRLQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPHQTMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
           T  P +  LA    K    V++  ENR    + +    V   D D  I  +    G KN 
Sbjct: 188 TYPPKMKQLAAELLKKPKMVSVGEENRTAETVAHVFYPV---DEDRKIELLSELIGRKNW 244

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF + +       + L           G+ SQ  R  AL+  ++G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRVLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ +L    E+ +HR GRTGRAG +G +V ++ +  +  A ++ R   
Sbjct: 305 ARGLDIQGLPHVVNYDLPFLAEDYVHRIGRTGRAGLQGHAVSLVGREDELTAVQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDA 383
             +     P  EA R RDA
Sbjct: 365 QRIRRVEQPGYEA-RNRDA 382


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 187/389 (48%), Gaps = 35/389 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF---SPASAP 75
           GY   T VQ+  +      +D++  AQTGSGKT AF L + +T+L +            P
Sbjct: 186 GYTKPTPVQKYAIPIIAGGRDLMACAQTGSGKTAAFLLPIINTILNDPRELVMTGQGCEP 245

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            A+ ++PTRELA+Q+  E       + V   V  GG S   + + +  G HI+V TPGRL
Sbjct: 246 HAVILSPTRELALQIFNEARKFALGSIVKSVVVYGGTSTMHQAQQVARGCHILVATPGRL 305

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK----KRRMLMFSATISP 191
            D +    +N   ++ VVLDEAD MLD+GF  D+E +L+        +R+ +M SAT   
Sbjct: 306 MDFLNRGRVNFQSVRFVVLDEADRMLDMGFLPDVEKMLEHPTMVPTGERQTVMVSATFPE 365

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA  +  + + + +       SD++     V+  D+   +  ILR  G K  +VF 
Sbjct: 366 EIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKVSKFDKRAKLTEILREEGGKKVLVFV 425

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+         L E  F   ++ G+  Q +R  AL   + GR  + +AT VAARG+D+ 
Sbjct: 426 ETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKSGRMGILVATAVAARGLDIK 485

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++  VI+ +L  + +  +HR GRTGR G +G            RA   +           
Sbjct: 486 NVAHVINYDLPKSIDEYVHRIGRTGRVGNRG------------RATSFYD---------- 523

Query: 372 APSVEAIRERDAQRILQD-----PLFLDS 395
            P V+A   RD  +ILQ      P FL+S
Sbjct: 524 -PDVDAPIARDLVKILQQANQNVPSFLES 551


>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
          Length = 764

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 213/409 (52%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   TS+Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 192 NLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 249

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 250 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 306

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 307 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 366

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 367 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 422

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 423 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 482

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 483 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 542

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 543 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 591


>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
          Length = 633

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 198/360 (55%), Gaps = 8/360 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P ++ E + ++G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 229 FKDYPDIL-EEIRKQGFQKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHID 287

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-Q 122
            ++   S    P  L +APTRELA+Q+ +E+   Y+  G+  AVC+ G    +E+ ++  
Sbjct: 288 GQSTPRSERKGPNVLVMAPTRELALQIEKEV-GKYSYHGIK-AVCVYGGGNRKEQINIVT 345

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D ++ K L+++ +  ++LDEAD MLD+GF   I   L      R+ 
Sbjct: 346 KGVQIVIATPGRLNDLVQAKVLDVTSVTYLILDEADRMLDMGFEPQIRKTLLDVRSDRQT 405

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M SAT    +  LA++Y K+ ++V + S +    H+ +  R  L+   +++N + +  R
Sbjct: 406 VMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLVAVHT-VTQRVYLIDEEEKNNMMFDFFR 464

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             G  +  IVF   +A V      LA    +  ++ G+  Q +R  AL+ M+ G   + +
Sbjct: 465 EMGVNDKVIVFFGKKAMVDHVASDLAVAGIECQSIHGDRDQCDREQALEDMKTGNVHILL 524

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A++L
Sbjct: 525 ATDVASRGLDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRKDWSHAQQL 584


>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
 gi|150274708|gb|EDN01772.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
          Length = 636

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 173/329 (52%), Gaps = 7/329 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+E GY   + +QE  + P L  +DVL  AQTG+GKT AF   +   L  +   
Sbjct: 10  QSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQRLGGD--- 66

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             PA  P+ +L + PTRELA+Q+    E       +  AV  GGV    +   L+ G  I
Sbjct: 67  -IPAGRPIRSLILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVDKLKKGVDI 125

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V TPGRL D ++G+G +++S L+  VLDEAD MLD+GF  D+  +L   P  ++ L FS
Sbjct: 126 LVATPGRLLD-LQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAVKQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +  L     K+ V+V +   +     ID    LV   ++   +  ++     KN
Sbjct: 185 ATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQSVYLVDKGNKTKLLAWLVEGLDVKN 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+   ++    L +      A+ G  SQ  R  AL   + G+ R  +ATD+AAR
Sbjct: 245 AIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRCLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+D+ +L  V +  L   PE  +HR GRT
Sbjct: 305 GLDIEELSHVFNYNLPEVPETYVHRIGRT 333


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 13/335 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--------P 75
           T VQ+  ++    ++D++  AQTGSGKT AF + + S +        P S         P
Sbjct: 130 TPVQKYAISIITGKRDLMACAQTGSGKTAAFLIPILSLIFNGGPVVKPQSYYGSRRKQFP 189

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LAL +APTRELA Q+  E +    +      V  GG     + +DL  G H++V TPGRL
Sbjct: 190 LALILAPTRELAAQIYEEAKKFTYRAVARPCVVYGGADFGYQVKDLDRGCHLLVATPGRL 249

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFSATISP 191
            D +    + + + K +VLDEAD MLD+GF   I  I+  D+ P   +R+ +MFSAT   
Sbjct: 250 VDMLERGMIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPSGQRQTMMFSATFPK 309

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVF 250
            I  LA+++  D + + +        +I  + V V   D+   ++ +L      + ++VF
Sbjct: 310 EIQVLARDFLDDYIFLAVGRVGSTSENIIQKMVWVEEDDKRAYLLELLNSTEPTSLSLVF 369

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+       + L    +   A+ G+ SQ++R +AL+  R G   + +AT VAARG+D+
Sbjct: 370 VETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRAGVRPILVATAVAARGLDI 429

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           P++  VI+ +L S+ E  +HR GRTGR G  G + 
Sbjct: 430 PNVAHVINFDLPSDIEEYVHRIGRTGRVGNVGTAT 464


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 19/366 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 245 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 303

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL  G
Sbjct: 304 PPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 363

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 364 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 423

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQ----HSDIDYRAVLVALSDRDN 233
           +SAT    +  LA ++  D +++NI S N       RQ     ++I+    LV L    N
Sbjct: 424 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVCLL---N 480

Query: 234 AIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            I  I +     N I VF  T+  V    +++    +   ++ G+ +Q ER + L+  R+
Sbjct: 481 EISPIKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKDFRN 540

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N
Sbjct: 541 GKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDN 600

Query: 352 MQRRAE 357
            ++  E
Sbjct: 601 AKQARE 606


>gi|156083314|ref|XP_001609141.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796391|gb|EDO05573.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 994

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 174/349 (49%), Gaps = 6/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   L  R Y     +Q   +   +  +DVL  A+TGSGKT+A+ L     +L + 
Sbjct: 395 LPDPILSLLQRRNYEKPFPIQMQCIPALMCGRDVLAIAETGSGKTMAYLLPAIRHVLYQ- 453

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +       + L IAPTRELA Q+G E   L    G+      GG  +  +   L+ G  
Sbjct: 454 PKLRENEGMIVLIIAPTRELASQIGVESSKLCKLVGIRTKAVYGGSPIGEQLNALKRGVE 513

Query: 127 IVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV GTPGRL + +    GK  N+  +  VV+DEAD M DLGF   I  I+D+    R+  
Sbjct: 514 IVCGTPGRLIEVLTISNGKVTNLRRVTFVVIDEADRMFDLGFSPQISAIVDNIRPDRQTA 573

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYH 242
           +FSAT  P I  LAK      +++ +    +  S +D   +++    +  A++ +L  +H
Sbjct: 574 LFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQHVMVLPERQKMYALLKLLGEWH 633

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + IVF + +         L +H +    L G   Q +R   LQ  RDG   + IAT 
Sbjct: 634 EHGSIIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDREFTLQDFRDGTKGILIATS 693

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           +AARGID+ ++ LVI+     + E+ +HR GRTGRAG  G S  F+ P+
Sbjct: 694 IAARGIDVKNVVLVINYATPDHIEDYVHRVGRTGRAGNIGTSYTFITPE 742


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 193/363 (53%), Gaps = 10/363 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +         
Sbjct: 2   DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINHQPYLERG 60

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G  I + T
Sbjct: 61  DGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAK---NA 247
            +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    A+     
Sbjct: 180 EVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATDVA+RG
Sbjct: 240 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  ++  EAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 359

Query: 365 VSV 367
            ++
Sbjct: 360 QAI 362


>gi|302818865|ref|XP_002991105.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
 gi|300141199|gb|EFJ07913.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
          Length = 601

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 177/357 (49%), Gaps = 17/357 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L E+     T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 163 FPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPLIMLALQEE 222

Query: 67  DRFS--PASAPLALAIAPTRELAVQ----------VGRELEWLYAKTGVVVAVCIGGVSV 114
              S      P  L + P+RELA Q          V RE  +   ++     +CIGG+ +
Sbjct: 223 QSSSLGGGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRS----MLCIGGIDM 278

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   ++ G HIVV TPGRL D +  K +N+   K + LDEAD ++DLGF +DI  + D
Sbjct: 279 RSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIREVFD 338

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ L+FSAT+   I   AK+     V VN+      + D+      V    +   
Sbjct: 339 HFKAQRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEAKIVY 398

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L+       ++FC  ++ V    + L       VA+ G   Q+ER  A+   + G+
Sbjct: 399 LLECLQ-KTPPPVLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIASFKQGK 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             V +ATD+A++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N
Sbjct: 458 KDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINKN 514


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 179/352 (50%), Gaps = 4/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +     
Sbjct: 268 KAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRE-LKEG 326

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL+ Q+ +E         V V  C GG S   + + L+ GA IVV TP
Sbjct: 327 DGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSKALEGGAEIVVATP 386

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    
Sbjct: 387 GRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKR 446

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAKNAIV 249
           +  LA++   D VR+        ++D+    ++   +        + N++ +  A + ++
Sbjct: 447 VEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWTWLLQNLIEFLSAGSLLI 506

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + +       L    F V+ L G++ Q ER+  +   +       +ATDVAARG+D
Sbjct: 507 FVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARGLD 566

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R
Sbjct: 567 IPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGHLVR 618


>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 441

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 174/340 (51%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL + GY   T +Q   + P +  +DVL SA TG+GKT A+ L +   L+    + S  
Sbjct: 17  DALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +     A T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    L  +   + + L+      +I
Sbjct: 195 AIKDFAERLLNEPVEIESDPSRRERKKILQWYYRAD--DLKHKTALLCHQLKQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L E       L GE+ Q +R+ A++ + DGR  V +ATD+AARGI
Sbjct: 253 IFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLVATDIAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG ++  +
Sbjct: 313 DIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFV 352


>gi|156549811|ref|XP_001606554.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 456

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 185/356 (51%), Gaps = 14/356 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I + L   G    T +Q+  +   L  KD +  A+TGSGKT+AF L +   L   
Sbjct: 8   NISSWIIDQLKLIGVKKPTPIQQNCIPAILSGKDCIGCAKTGSGKTLAFALPILQKL--S 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D +       AL + PTRELA Q+G +   +     +     +GG+ +  + ++L    
Sbjct: 66  EDPY----GIFALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQGQELARHP 121

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HIVV TPGRL DH+      +++ +K +VLDEAD +L   F + +  I  + PK R+ L+
Sbjct: 122 HIVVATPGRLADHLESCNTFSLARIKFLVLDEADRLLGGHFDEQLSVIFKALPKNRQSLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYH 242
           FSATI+ A+  + +   K+        ++   +  ++D R VL     RD  +V ++R  
Sbjct: 182 FSATITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQRYVLCPKDVRDAFLVEVIRTF 241

Query: 243 GAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            A N     ++F  T  +    +  L E  F  VAL   + Q+ER +AL   +    ++ 
Sbjct: 242 RADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALSKFKSNHTKIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           IATDVAARG+D+P + LVI+  + + P+  +HR GRT RAGR GM+V  V P ++ 
Sbjct: 302 IATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLVTPYDIN 357


>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E LS +GY   T +Q  ++   LR +D+L +AQTG+GKT AF L +   L A ++  S  
Sbjct: 14  ETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPIIQKLNASSE--SGQ 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           ++  AL I PTRELA QV   +        +      GG ++ R+ ++L  G  I+V TP
Sbjct: 72  ASARALIIVPTRELASQVAEAIRSYAEGLELNCIALYGGANMARQAKELSEGVDIIVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +  +   + +S ++ +V DEAD + D+GF  ++  I+D  P  R+ ++FSAT++ A
Sbjct: 132 GRLIELNKQGHVPLSRIEYLVFDEADTIFDMGFIREVGQIIDLLPLNRQNMLFSATMTGA 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKN---AI 248
           +  L++   K  + V I  +N + +D+  R V+  +  +R   +++ L   G+ N    +
Sbjct: 192 VKQLSEKILKKPLLVEI--DNLKAADMTLRQVVHPVEKERKKELLSFL--IGSNNYPQVL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+      +  L     +   + G+     R  AL   R+G AR+ +ATD+AARG+
Sbjct: 248 VFTRTKTEADEVSAELTASGLKNAVIHGDKKHGARDRALSEFREGSARILVATDIAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L++VI+ ++     + LHR GRTGRAG +G+++ ++
Sbjct: 308 DIEGLDVVINYDIPHVSTDYLHRIGRTGRAGNEGLAITLL 347


>gi|29830666|ref|NP_825300.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607778|dbj|BAC71835.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 747

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 188/362 (51%), Gaps = 5/362 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L   +
Sbjct: 59  LPEGVVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARLAGGH 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 119 ---TDKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 175

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++++++  VLDEAD+M DLGF  ++  + D  P   + ++FS
Sbjct: 176 VLVATPGRLRDIINRGACSLANVEVAVLDEADQMSDLGFLPEVTELFDQIPAGGQRMLFS 235

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V   D+      I    G   
Sbjct: 236 ATMENEISTLVKRYLTNPVTHEVDSAQGNVTTMSHHILVVKPKDKAPVTAAIASRKG--R 293

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 294 TIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 353

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 354 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 413

Query: 367 VV 368
             
Sbjct: 414 AA 415


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 193/382 (50%), Gaps = 7/382 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---NDRFSP 71
           L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L +   L  +   + + S 
Sbjct: 50  LTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQHLFLQQHLSSKSSK 109

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++ +     G +  V + GGVS + +   L+ G  I+V
Sbjct: 110 GNYVTRLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGTDILV 169

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF D++  +L   PK ++ L+FSAT 
Sbjct: 170 ATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLGLLPKNKQTLLFSATF 229

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL +    D V + + S +   S +  R   V   ++   + ++++ +  + A++
Sbjct: 230 PEQVQTLTQELLNDPVEIQLQSADA--STLVQRVFTVNKGEKTALLAHLIKQNEWRQALI 287

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + S       L++         G+  Q  R+  L   + G   V IATD+AARG+D
Sbjct: 288 FVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLDAFKAGEIEVLIATDIAARGLD 347

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I  +     + + ++  + +  
Sbjct: 348 IEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKKNKIRLER 407

Query: 370 EPAPSVEAIRERDAQRILQDPL 391
           E     EA    +A  I   P+
Sbjct: 408 EQVEGFEADEVNEAFLIANKPM 429


>gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 495

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 190/356 (53%), Gaps = 27/356 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  +L+  G  N  ++QE  L   L   D++  A+TG GKT+AFG+ L         
Sbjct: 17  PEIVA-SLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQ------- 68

Query: 68  RFSPASA---PLALAIAPTRELAVQVGREL----EWLYAKTG--VVVAVCIGGVSVHRER 118
           R + A+A   P AL + PTREL +QV  +L    + L    G    +    GG     + 
Sbjct: 69  RVAEAAAEDIPRALVVVPTRELCLQVTNDLVDACKQLKLSDGRPTRIVSLYGGRPYEGQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L+ G  +VVGTPGRL D + G+G L ++ ++ +VLDEADEMLDLGF  D+E I+   P
Sbjct: 129 ATLEKGVDVVVGTPGRLLD-LWGRGNLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLP 187

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRD 232
             ++ ++FSATI   + TLA+ +      +     + A+ + + +   YRA  +   ++D
Sbjct: 188 TGKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVYRAHAL---NKD 244

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +   L+  G    ++F  T+ S  +    L E  F   +L G++SQ  R  AL   R 
Sbjct: 245 ELVSRFLQAEGRGTTMIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGFRK 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+  + + TDVAARGID+  +  VI+     + +  +HR GRTGRAGR G+++ ++
Sbjct: 305 GKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIAITLV 360


>gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74]
          Length = 421

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83]
          Length = 421

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ E L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EILEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 180/351 (51%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 2   KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 61

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 62  EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 121

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 122 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 181

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 182 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 242 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 301 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 351


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 189/368 (51%), Gaps = 20/368 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           Y   T VQ+  +      +D++  AQTGSGKT  F   + S   A+    +         
Sbjct: 180 YKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPIISAAFAKGPLPTAGMQAQGGG 239

Query: 73  -----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                + P AL +APTREL  Q+  E      ++ V  AV  GG  V ++ R ++NG  +
Sbjct: 240 YGKRKAFPTALILAPTRELVSQIHEEARKFTYRSWVRPAVVYGGAEVGQQLRQIENGCDL 299

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSP--KKRRML 183
           +  TPGRL D I    +++S+++ +VLDEAD MLD+GF   I  I+  +  P   +R+ L
Sbjct: 300 LSATPGRLVDLIERGRISLSNIRYLVLDEADRMLDMGFEPQIRRIVTGEDMPGVHERQTL 359

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LAK++ KD + +++        +I  +   V  +D+ + +++IL    
Sbjct: 360 MFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKVEYVEDADKRSVLLDILTSMP 419

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+         L    F   ++ G+ +Q+ER  AL+  R  R  + +AT 
Sbjct: 420 QGGLTLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQRERERALETFRSSRTPIMVATA 479

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERL 359
           VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G+S        +N+ R    L
Sbjct: 480 VAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVSTAFFNRGNKNIVRELIEL 539

Query: 360 FREANVSV 367
            REA+  +
Sbjct: 540 LREAHQEI 547


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 179/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L    T+       S       L
Sbjct: 40  GFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQTV------NSNVRETQVL 93

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     + V  CIGG  V  + + L++G  IV GTPGR+   
Sbjct: 94  LLSPTRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDIKALESGVQIVSGTPGRVNHM 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + LN  ++K ++LDEADEML+ GF++ +  +    P   ++++ SAT+   +  +  
Sbjct: 154 ITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVLVSATLPHDVIEITN 213

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  +  +V +  +      I    + V     + + + ++        A++FC+T+  V
Sbjct: 214 KFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLIITQAVIFCNTKEKV 273

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K + +  F+V  + GE+SQ+ER++ +Q  R G +RV I+TD+  RG+D+  + LV+
Sbjct: 274 DWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRGLDVQQVSLVV 333

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 334 NYDLPNSRESYIHRIGRSGRYGRKGVAI 361


>gi|308174303|ref|YP_003921008.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307607167|emb|CBI43538.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554249|gb|AEB24741.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 438

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 185/346 (53%), Gaps = 11/346 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+       LL  
Sbjct: 10  NLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAY-------LLPI 62

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLY--AKTGVVVAVC-IGGVSVHRERRDL 121
            +R  P S  + A+  APTRELA Q+ +E   +   A+   +   C IGG    +    L
Sbjct: 63  LNRIDPGSDTVQAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTDKQKSIDKL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLDLGF +D+++I    P++ +
Sbjct: 123 KTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIGSRMPEELQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++    ++  +      I++  V     D+D  + +++  
Sbjct: 183 MLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFDMMSN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF +T+ +     K L E   ++  L G L+ +ER   ++ + D      IAT
Sbjct: 243 LNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDLEFTYVIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 303 DLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTI 348


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/371 (32%), Positives = 185/371 (49%), Gaps = 61/371 (16%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTL-----------LAEND 67
           Y   T VQ+  + P ++EK D++  AQTGSGKT AF L + S +           + EN 
Sbjct: 200 YTRPTPVQKHAI-PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 258

Query: 68  RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           R+      P++L +APTRELAVQ+  E      ++ V   V  GG  + ++ RDL+ G H
Sbjct: 259 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCH 318

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRM 182
           ++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I+  D+ P K  R  
Sbjct: 319 LLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHT 378

Query: 183 LMFSATISPAITTLAKNYQKDAV-----RVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +MFSAT    I  LA+++  + +     RV   SEN              ++ +D+    
Sbjct: 379 MMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSEN--------------ITQKDSL--- 421

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+         L    +   ++ G+ SQ++R  AL   R G++ +
Sbjct: 422 ---------TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 472

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G+            A 
Sbjct: 473 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL------------AT 520

Query: 358 RLFREANVSVV 368
             F E N+++ 
Sbjct: 521 SFFNERNINIT 531


>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 201/364 (55%), Gaps = 24/364 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              ++   L + PTRELA Q  +E+E     T +   +  GG     +   L+    I++
Sbjct: 67  KVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT- 188
           GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D++ ++D  P +++ ++FSAT 
Sbjct: 127 GTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLFSATT 186

Query: 189 ----ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVN-ILRYH 242
               +   I  +  N   + +++N  S   Q +D   + ++ A  ++    IVN +L   
Sbjct: 187 GGSGLREMIAKVLNN--PEHLQLNAVS---QLNDTTRQQIITADHNQHKEQIVNWLLANE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +TRA   R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATD
Sbjct: 242 TYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359
           VAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +I     N+    ER 
Sbjct: 302 VAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERY 361

Query: 360 FREA 363
            +++
Sbjct: 362 LKQS 365


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 179/328 (54%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L    T+       S       L
Sbjct: 40  GFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGALQTV------NSNVRETQVL 93

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     V V  CIGG  V  + + L++G  IV GTPGR+   
Sbjct: 94  LLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDIKALESGVQIVSGTPGRVNHM 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + LN  ++K ++LDEADEML+ GF++ +  +    P   ++++ SAT+   +  +  
Sbjct: 154 ITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPPTIQVVLVSATLPHDVIEITN 213

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  +  +V +  +      I    + V     + + + ++        A++FC+T+  V
Sbjct: 214 KFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCDLYESLIITQAVIFCNTKEKV 273

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K + +  F+V  + GE+SQ+ER++ +Q  R G +RV I+TD+  RG+D+  + LV+
Sbjct: 274 DWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRVLISTDLWGRGLDVQQVSLVV 333

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 334 NYDLPNSRESYIHRIGRSGRYGRKGVAI 361


>gi|50290013|ref|XP_447438.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661246|sp|Q6FQQ6|IF4A_CANGA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49526748|emb|CAG60375.1| unnamed protein product [Candida glabrata]
          Length = 396

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 193/347 (55%), Gaps = 13/347 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q+  + P +   DVL  AQ+G+GKT  F +A          R  PA  AP A
Sbjct: 42  GFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQ-------RIDPAIKAPQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+Q+ + +  L     + V  CIGG S   +   L++ A IVVGTPGR+ D
Sbjct: 95  LMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFD 153

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +I+ +   + ++K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  + 
Sbjct: 154 NIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTTQVVLLSATMPRDVLEVT 213

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + ++ VR+ +  +      I    V V     + + + ++        A++FC+TR  
Sbjct: 214 AKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKYDCLTDLYDSISVTQAVIFCNTRRK 273

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V ++  +L QQER   ++  R G +R+ I+TD+ ARGID+  + LV
Sbjct: 274 VEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 333

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           I+ +L +N EN +HR GR GR GRKG+++ F++ +++Q  R  E+ +
Sbjct: 334 INYDLPTNKENYIHRIGRGGRFGRKGVAINFIVNEDVQALRELEQFY 380


>gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 647

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV---G 91
           L  +DV+  AQTGSGKT  F L     ++A+  R      P+ L + PTRELA QV    
Sbjct: 3   LSGRDVVGIAQTGSGKTATFLLPAVIHIMAQ-PRLLRNEGPICLVLVPTRELAQQVLSVA 61

Query: 92  RELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
           +E    +A    + A+C  GG +   + R++Q G  I + TPGRL D IR +   +S + 
Sbjct: 62  KE----FADAASLRAICFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRVT 117

Query: 151 AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
            +VLDEAD MLD+GF   I  IL      R+ LM+SAT    + TLA+ +  D ++VNI 
Sbjct: 118 YLVLDEADRMLDMGFEPQIRKILSHVRPDRQTLMWSATWPKEVQTLAREFLTDYIQVNIG 177

Query: 211 SENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
           S +  H++ +   ++  + D  ++  ++ +L   G    +VF  T+    + T  L    
Sbjct: 178 SVSL-HANPNITQIVEIMDDWRKEQRLIELLSSFGRSRTLVFVETKRRTDQLTNSLRRRG 236

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F V A+ G   Q++R   L   + GR  + IATDVA+RG+D+ ++E V++ +  +  E+ 
Sbjct: 237 FYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVASRGLDIDNIEYVVNFDFPNQTEDY 296

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR---EANVSVVWE 370
           +HR GRT R+ ++G +         R+A  L     EAN  +  E
Sbjct: 297 IHRIGRTARSDKRGTAFTFFTYKNARQARDLIEILDEANQEITPE 341


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 191/363 (52%), Gaps = 5/363 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 385 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 443

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 444 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 503

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 504 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 563

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 564 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 623

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 624 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 683

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 684 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTT 743

Query: 370 EPA 372
            P+
Sbjct: 744 VPS 746


>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
 gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
          Length = 443

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 181/345 (52%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++ +AL ++GY   TSVQ   +   L  +D+L SA TG+GKT AF L     LL +  
Sbjct: 17  PQLL-KALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAIQHLL-DYP 74

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+             I
Sbjct: 75  RRKPG-APRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVFNKNQDI 133

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++   +FSA
Sbjct: 134 VVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKHTWLFSA 193

Query: 188 TIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T+    +   A+    D V++      R+   I    Y A    L  +   +  +++   
Sbjct: 194 TLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHAD--NLDHKTKLLARLIKDFE 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF   R +V   +  L +   +   L G+++Q +R+ A+  ++D    V ++TDV
Sbjct: 252 MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKDSVVNVLVSTDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 312 AARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A++   +  +DV   A TGSGKT AF L     +L    R  PA+A   L
Sbjct: 167 GYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLERMLHRGPR--PAAATHVL 224

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV +  E L   T +   + +GG+S + +   L+    IVV TPGR+ DH
Sbjct: 225 VLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRPEIVVATPGRVIDH 284

Query: 139 IRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +R      +  L  ++LDEAD +L++GF ++I+ I+   PKKR+ L+FSAT++  +  LA
Sbjct: 285 VRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALA 344

Query: 198 KNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
               K+  R++   + +  ++  +   +      + ++  ++ I+     K+ I+F  T+
Sbjct: 345 SLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTK 404

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R   ++     +   L G+++Q +R  AL   R G     IATDVAARG+D+P ++
Sbjct: 405 QEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVD 464

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            VI  +      + LHR GRT RAG+KG ++  + ++
Sbjct: 465 AVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEES 501


>gi|312887813|ref|ZP_07747400.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311299632|gb|EFQ76714.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 433

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 217/425 (51%), Gaps = 40/425 (9%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I +AL       L  +Q A LN   +  D+++ + TGSGKT+ F L + S L       
Sbjct: 1   MIKKALENLNIAALNEMQHAALNVP-QHADMVLLSPTGSGKTLGFLLPVLSLL------D 53

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S  +    L + P+RELA+Q+ +  + +   TG  V  C GG +   E+  L     +++
Sbjct: 54  SGKAGVQVLVLVPSRELALQIEKVFKAM--GTGFKVNCCYGGHATRIEKNSLSQPPAVLI 111

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL  HIR +  + S +  ++LDE D+ L+ GF++D+ +I+      ++ ++ SAT 
Sbjct: 112 GTPGRLAYHIRNESFDASTVHTLILDEFDKALEFGFQEDMAYIIRGLTGVKKRILTSATK 171

Query: 190 S---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
               PA T +     K AV +N   +     D+  +AV+    D+ +A+  ++   G K 
Sbjct: 172 MDEIPAFTAV-----KHAVELNYLKDLVTKPDLKIKAVIADAEDKLSALFALICKIGDKA 226

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC+ R +V R +++L+          G + Q++R +AL   R+G  R+ I TD+A+R
Sbjct: 227 TLVFCNHREAVDRISELLSYMGLSHGVFHGGMEQEDREHALLKFRNGSNRLLITTDLASR 286

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P++E VIH +L  N E   HR+GRT R   KG +  ++ +           E N+ 
Sbjct: 287 GLDIPEIECVIHYQLPHNEEAFTHRNGRTARMHAKGTAYLLLTE-----------EENLP 335

Query: 367 VVWEPAPSVEAIRERDAQRILQDP-----LFLDSIQGDEKKMVDV---LLAKHDPEKIAA 418
            + +  P VE + E++   I+  P     L++ + + D+   VD+   LL K   +K   
Sbjct: 336 YLQQ-KPEVETLPEKN---IIPKPTPWATLYIAAGKKDKVNKVDIVGLLLQKGGLQKDEL 391

Query: 419 GFLRI 423
           G + +
Sbjct: 392 GLIEV 396


>gi|124001007|ref|XP_001276924.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121918910|gb|EAY23676.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 491

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 193/351 (54%), Gaps = 6/351 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L    +  + ++QE  +   L   D+L +A+TGSGKT+AF +     L  +N   +  
Sbjct: 40  EVLKRLPFNTMYAIQEQAIPILLSGGDILAAAKTGSGKTLAFLIPAIDLLFRKNA--TKK 97

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              + L +APTRELA Q+      L   T V      GG     E   L++G +++V TP
Sbjct: 98  DGTIVLIVAPTRELADQIFDVATLLLKDTEVSFGAAYGGKEKKNETTLLKSGINLLVATP 157

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRLCDHI   K  ++ +LK +++DEAD +L+ G++D +  I++  P +R+  +FSAT + 
Sbjct: 158 GRLCDHILTTKDWSLENLKMLIIDEADRILEDGYKDQLHAIVEGIPSERQTALFSATQTK 217

Query: 192 AITTLAK-NYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            ++ +A+ +++   V V +   ++    +++    +++  S R   ++ IL+ +  K  I
Sbjct: 218 DVSKIAEVSFKHTPVYVGVDDNADEVTAANLTQDCMIITPSKRLMLLITILKRNDKKKVI 277

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V    + L +     +AL G+ +QQ+R  +L+  R+ ++ + + TDVAARG+
Sbjct: 278 VFFNTRAGVKFHHQYLKKMNINTIALHGDQTQQKRLTSLEEFRNKKSGIMLCTDVAARGL 337

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+  +  VI  +   + +  +HR GR  RAG+ G ++ ++  N ++  +RL
Sbjct: 338 DIEGVHWVIQYDPPQSIKEYIHRVGRCARAGKSGKALIILLPNEKKFVDRL 388


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 192/345 (55%), Gaps = 13/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A + P L  +D+ V+AQTGSGKT AF L + + L+ +     P 
Sbjct: 13  KAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNRLIGDA---QPR 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  +E+E     T +   +  GG     +   L+    +++GTP
Sbjct: 70  VDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDVLIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +H+    L +  ++ +V+DEAD MLD+GF +D++ ++    K+++ L+FSAT   A
Sbjct: 130 GRLIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQQTLLFSATSGGA 189

Query: 193 -ITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKN 246
            +  +      D +  ++N  SE  + +    R  ++   D   ++  +  +L     + 
Sbjct: 190 GLREMVAKVLNDPLHLQLNRVSELNEST----RQQIITADDPAHKEKLVHWLLANETYQK 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F +TRA   R    L     +V  L GE  Q+ER  A++ ++ G  +V +ATDVAAR
Sbjct: 246 AVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+  ++LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 306 GLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHN 350


>gi|326778321|ref|ZP_08237586.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658654|gb|EGE43500.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 753

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 186/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL    TL A  
Sbjct: 84  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGL---PTLAALA 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 141 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 201 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y    V   + S     + + +  ++V   D+      I    G   
Sbjct: 261 ATMENEIGTLVKRYLSTPVTHEVDSAQGNVTTMSHHVLVVKPKDKAPVTAAIAARKG--R 318

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 319 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 378

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V
Sbjct: 379 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGV 437


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 196/363 (53%), Gaps = 13/363 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   + + 
Sbjct: 245 LPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGKQ 303

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G
Sbjct: 304 PPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERG 363

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N++    +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 364 VEVIIATPGRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 423

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V +L+   
Sbjct: 424 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRLLKEIA 483

Query: 241 --YHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              + A N    I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++
Sbjct: 484 PTNNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKS 543

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++
Sbjct: 544 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603

Query: 355 RAE 357
             E
Sbjct: 604 ARE 606


>gi|270264230|ref|ZP_06192497.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270041879|gb|EFA14976.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 429

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 185/341 (54%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A+ 
Sbjct: 19  LVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSNPAKQ 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  DRQT--NQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGNLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 192/358 (53%), Gaps = 10/358 (2%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
            +K FE+  +  ++ E + + GY   T +Q+  + P + E +D++  AQTGSGKT AF L 
Sbjct: 1056 IKKFEDAGLRTIVTENVIKSGYKVPTPIQKVSI-PVINEGRDMMACAQTGSGKTAAFLLP 1114

Query: 58   LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + S LL E+ +      P A+ ++PTRELA+Q+  E      ++ + +++  GG S   +
Sbjct: 1115 ILSKLL-EDPQDLEIGKPQAVVVSPTRELAIQIFNEARKFGFESYLKISIVYGGTSFKHQ 1173

Query: 118  RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--S 175
               +  G H+++ TPGRL D +    +  +  + VVLDEAD MLD+GF + +  I+   +
Sbjct: 1174 NECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSESMRKIMTHRT 1233

Query: 176  SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + + LMFSAT    I  LA  +  + V V I       SD+      V   ++ + +
Sbjct: 1234 MRSEHQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFNKRSKL 1293

Query: 236  VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + ILR   A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  + G+ 
Sbjct: 1294 MEILR-EDANGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKM 1352

Query: 296  RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQN 351
            +V IAT VAARG+D+ +++ V++ ++ +N  + +HR GRTGR G  G   S F + Q+
Sbjct: 1353 KVLIATSVAARGLDIKNVKHVVNFDMPNNIADYVHRIGRTGRVGNNGRATSFFDVDQD 1410


>gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM
           2246]
          Length = 437

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 5/333 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I  A  + GY   T VQ   +   L  +DVL +AQTG+GKT  F L +   LLA+    
Sbjct: 11  LIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPILHRLLAQ---- 66

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELA Q+      L   T +  A+ +GG     + R  + G  I+V
Sbjct: 67  -PRGGTRALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAFRAGVDIIV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D ++     +     +VLDEAD + D+GF  D++ I+   P ++  L+FSAT+
Sbjct: 126 ATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKHTLLFSATM 185

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I  LA    ++   V I   +     I   A  V    +   + ++LR     + +V
Sbjct: 186 PPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHLKTALLRHLLRETEMPSVLV 245

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  + +A   F V  L    +  +R+ A++  R G+ +V +AT++AARG+D
Sbjct: 246 FTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVMVATNIAARGLD 305

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +  +  VI  ++   PE+ +HR GRTGRAG  G
Sbjct: 306 VNHITHVISTDVPDVPEDYVHRIGRTGRAGATG 338


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +I
Sbjct: 195 AIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 170/334 (50%), Gaps = 6/334 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + T +Q   +   L   D++ SAQTG+GKT AF L + + L A   R     AP  L
Sbjct: 20  GYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTRLGAHAAR-----APRVL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV          T +      GGV    +R +L+ G  ++V TPGRL D+
Sbjct: 75  VLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRGVDVIVATPGRLMDY 134

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + +N+  ++ +VLDE D MLD+GF   ++ I+   P++R+ L FSAT+ P I  +A 
Sbjct: 135 LHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLFFSATVPPEIQAVAS 194

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              ++  RV +      +  + +    VA   +   +  +L      + +VF  T+    
Sbjct: 195 FALRNPTRVEVGVNRSVNESVKHALYPVAADQKFELLEALLARTDFDSVLVFSRTKHGAD 254

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +  + L      V  L    SQ +R  AL   + G+  + +ATD+AARGID+  +  VI+
Sbjct: 255 KIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATDIAARGIDVAGVSHVIN 314

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
            ++   PE+ +HR GRTGRA   G +   V P+N
Sbjct: 315 YDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPEN 348


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALDTKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA+       P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L
Sbjct: 75  ---PAAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           + G  I+V T GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +
Sbjct: 132 EQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPATQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
 gi|218512022|sp|Q6BGU8|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii]
          Length = 441

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 199/363 (54%), Gaps = 30/363 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + EAL+       T++Q A +   L+  D +  A+TGSGKT+AF   +  T  +E+
Sbjct: 8   VSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPML-TQWSED 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S    L + PTRELA+Q+  +   L +   + V+V +GG  + ++  +LQ   H
Sbjct: 67  -----PSGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALELQRRPH 121

Query: 127 IVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKR 180
            VV TPGRL DHI   G      +  +K ++LDEAD +L   F  D+E  F +  S  KR
Sbjct: 122 FVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNILPSTDKR 181

Query: 181 RMLMFSATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------- 232
           + L+F+AT++ A+  L  +   K  + V I     +   +D  A+   LS +        
Sbjct: 182 QTLLFTATVTDAVRALKDRPVPKGKLPVFI----HEVETVDKVAIPSTLSVKYVFVPSYV 237

Query: 233 -----NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
                ++I+N+ +Y  +  +I+F +  A+     + L +  F+V +L  E+ Q ER+N+L
Sbjct: 238 KEAYLHSILNLPQYSDSL-SIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSL 296

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + G A++ IATDVA+RG+D+P +ELV++ ++ ++ ++ +HR GRT RAGRKG ++ +
Sbjct: 297 HRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISI 356

Query: 348 IPQ 350
           + +
Sbjct: 357 VAE 359


>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
 gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
          Length = 453

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 183/366 (50%), Gaps = 13/366 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ E GY + T++QE  +   L   DVL  AQTG+GKT A+ L +   +     +++  
Sbjct: 19  EAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPILMKV-----KYAQG 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTREL +Q+    + L   T + V    GG+    +   +Q G  I++ TP
Sbjct: 74  LHARALILAPTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETIQAGVDIIISTP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR  D  R   L    LK +VLDEAD+M+D+GF   I  IL+  P KR+ L+FSAT    
Sbjct: 134 GRFLDIYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPVKRQNLLFSATFGTR 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAIVFC 251
           I  LA  + +   RV +  +      ID     V  +  + N +  +L       AI+F 
Sbjct: 194 IEKLAHEFLEFPERVEVTPQATTAETIDQVMYFVPNIKTKINLLAKLLEEEAVNRAIIFT 253

Query: 252 STRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +R +       L   H  +V  +     Q  R N+++  + G  R+ +ATDVA+RG+D+
Sbjct: 254 RSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRILVATDVASRGLDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RAERLFREANVSV 367
             +  VI+ ++    E+ +HR GRTGRA  +G ++ FV P       + E + R   + V
Sbjct: 314 TMVSHVINFDIPLIYEDYVHRIGRTGRAEHEGKAISFVNPAEAYHFEKIEEIIR---MKV 370

Query: 368 VWEPAP 373
           V +P P
Sbjct: 371 VEKPIP 376


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 177/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 295 NLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHD 354

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                 F     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 355 GITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIV 414

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++      S +
Sbjct: 415 QGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKE 474

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ LMFSAT    I  LA  + K + + V +        D+    + V    +   +V 
Sbjct: 475 QRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVE 534

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 535 ILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPV 594

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 595 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 642


>gi|332879225|ref|ZP_08446923.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682883|gb|EGJ55782.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 440

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 195/366 (53%), Gaps = 16/366 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L +    +LT++Q+  +    + KD+++ + TGSGKT+A+ L L  +L  EN    
Sbjct: 6   IKEILWKLHIDSLTAMQQTTVEEYRKGKDLVLLSPTGSGKTIAYLLPLVQSLKNEN---- 61

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVV 129
                 A+ + P+RELA+Q+ +  + +   TG+ V  C GG     E R +++    +++
Sbjct: 62  ---VLQAVVLVPSRELALQIEQVFKSM--GTGIPVMSCYGGRPAMDEHRTMKSLNPQVII 116

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    ++ SH+  +V+DE D+ L++GF++++  ++   P  +R  + SAT 
Sbjct: 117 GTPGRMNDHLNKGNIDASHVHTLVIDEFDKCLEMGFQEEMSEVIAQIPYLKRRFLLSATD 176

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +PAI       + D +++N   +  Q  + I    V     D+   +  +L Y G K+++
Sbjct: 177 APAIPRFVS--EGDFLKLNFLEDEEQIPERIKVYTVKSPEKDKLEVLSKLLCYLGDKSSL 234

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF + R SV R  + L +         G + Q++R  AL    +G   V ++TD+AARG+
Sbjct: 235 VFVNYRESVERVYRYLLQEGISCEMFHGGMEQKDRERALYKFSNGSCNVFVSTDLAARGL 294

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P+++ VIH  L  N +  +HR+GRT R    G +VF+I    +   E   ++     V
Sbjct: 295 DIPNIDHVIHYHLPLNEDAYIHRNGRTARWDASG-NVFLILGPEEYLPE-FIQQIPEDYV 352

Query: 369 WE-PAP 373
           WE P P
Sbjct: 353 WEGPKP 358


>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 487

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   E G    T VQ   +   L  +DVL  AQTGSGKT AF L +   L AE+      
Sbjct: 67  ETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRL-AED-----P 120

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  + + L +   +  +V +GG+ +  + R L +  HIV+ TP
Sbjct: 121 YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSLVSRPHIVITTP 180

Query: 133 GR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR   L ++        S  K +VLDEAD +LD+GF+D++  I    PK R+ L+FSAT+
Sbjct: 181 GRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATM 240

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY---HGAK 245
           +  + TL ++    A     A E  +  D   +  +    D ++  +V+IL      G +
Sbjct: 241 TSNLQTLLEHSSNKAYFYE-AYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIR 299

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++F ST  +  R + +L E   + VA+    SQ  R +AL   + G+  + +ATDVA+
Sbjct: 300 SAMIFVSTCRTCQRLSLMLDELEVENVAMHSLNSQSMRLSALSKFKSGKIPILLATDVAS 359

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+P ++LVI+ ++  NP + +HR GRT RAGR G++V +I + 
Sbjct: 360 RGLDIPTVDLVINYDIPRNPRDYVHRVGRTARAGRGGLAVSIITET 405


>gi|154279240|ref|XP_001540433.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
 gi|160395527|sp|A6R3R5|IF4A_AJECN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150412376|gb|EDN07763.1| eukaryotic initiation factor 4A [Ajellomyces capsulatus NAm1]
          Length = 385

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 171/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ QQ+R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
           98AG31]
          Length = 659

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 198/354 (55%), Gaps = 10/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+ E G+ ++T VQ   + P +  +DVL +A+TGSGKT+AF L  A  +L+ 
Sbjct: 133 NLSPGTAKAIEEMGFKHMTEVQARTIPPLMTGRDVLGAARTGSGKTLAF-LVPAVEMLSR 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +   A+ ++PTRELA+Q+    + L        A+ IGG +   E   L  G 
Sbjct: 192 L-QFKPRNGTGAIIVSPTRELALQIFGVAQELMKHHSQTFAITIGGANRKAEAEKLIKGV 250

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRML 183
           ++++ TPGRL DH++  KG   S+LKA+++DEAD +L++GF D++  I+   P + R+ +
Sbjct: 251 NLLISTPGRLLDHLQNTKGFVFSNLKALIIDEADRILEIGFEDEMRKIISLLPSENRQSM 310

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNIL 239
           +FSAT +  +  LA+ + +   + +N+ + N+Q + +   +   V+     R   +   L
Sbjct: 311 LFSATQTTKVQDLARISLRPGPLYINVDA-NKQDATVQGLEQGYVVCESEKRFLLLFTFL 369

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K  IVF S+  SV    ++L       + L G+  QQ+R+N      +    + +
Sbjct: 370 KKSLNKKVIVFFSSCNSVKYHGELLNYIDIPALDLHGKQKQQKRTNTFFEFCNAPTGILL 429

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
            TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S +F++P  +
Sbjct: 430 CTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSEL 483


>gi|323342091|ref|ZP_08082324.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464516|gb|EFY09709.1| DEAD/DEAH box family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 446

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 188/347 (54%), Gaps = 13/347 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +  LTSVQE +L     ++D++V + TG+GKT AF  A+   +    D+        AL 
Sbjct: 15  FRELTSVQEKVLKEIKNKRDLIVKSDTGTGKTHAFLFAILELIDPTVDQTQ------ALI 68

Query: 80  IAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +APTRELA+Q+    RE+  L  +  +   + IGG+   R ++ ++    I++ TPG+  
Sbjct: 69  LAPTRELAMQIQNFAREITTLDER--ITTELAIGGMDNSRLKKKIEKQPMILITTPGKFL 126

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +    L +  +KA+V+DE D MLD GF ++++ I          +++SATI   +   
Sbjct: 127 DILSWSVLRLDFIKALVIDETDMMLDYGFINEVDTIASRLSNDTLFMLYSATIPTGLRAF 186

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            K Y K  + + +++E +    ID+  +     D + A++++L       A+VF +T+  
Sbjct: 187 IKKYLKHPIEI-VSTEEKLKPRIDHILINQRHRDMNEAVLDVLSAINPLLAVVFTNTKVQ 245

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L ++  + V L G++S + R   L  +   R +  +ATD+AARGIDLP++  V
Sbjct: 246 AGEVARYLRDYGIECVELHGDVSDRGRKQVLNQINSKRVQYIVATDLAARGIDLPEISHV 305

Query: 317 IHAELSSNPENLL-HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           I+A L ++  +   HRSGRTGR+GR+G S+ ++ Q  Q    RL ++
Sbjct: 306 INAGLPNHDLDFYTHRSGRTGRSGRQGYSISIVTQKDQGAVTRLMKK 352


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     K A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYKKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|301120732|ref|XP_002908093.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103124|gb|EEY61176.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 564

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/321 (33%), Positives = 174/321 (54%), Gaps = 6/321 (1%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           + +G+   T +Q          +D++  A+TGSGKT+AF +     + A+ +       P
Sbjct: 164 TTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSHKHPGP 223

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L +APTRELA+Q    +     K G+      GGV  H +++ L++G H+VV TPGRL
Sbjct: 224 RMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRL 283

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  +  N+S +  VVLDEAD MLD GF  DI  I+ S+  +R++ MFSAT   +I  
Sbjct: 284 KDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPERQIAMFSATWPQSIQK 343

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---DNAIVNILRYHGA-KNAI-VF 250
           LA  +  D V+V I S+    S  +   ++  + DR     A   + +YH + KN I +F
Sbjct: 344 LAHEFLNDPVKVTIGSDELAASH-NVTQIVEVVEDRARDSRAHALLQKYHASRKNRILLF 402

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +    R  ++L +  +  +A+ G+ +QQ+RS A++  + G   + IATDVAARG+D+
Sbjct: 403 VLYKKEADRVERMLHQRGWNCIAIHGDRNQQQRSEAVEQFKSGEVPLLIATDVAARGLDI 462

Query: 311 PDLELVIHAELSSNPENLLHR 331
           P +E V++       E+ +HR
Sbjct: 463 PGVEYVMNYSFPLTIEDYVHR 483


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/344 (34%), Positives = 183/344 (53%), Gaps = 13/344 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L   D++  A TGSGKT+AFGL     +LA+  + +P S P  L +APTRELA Q  +  
Sbjct: 83  LSGHDMVGIAATGSGKTMAFGLPALMQILAQ-PKCAPGS-PQCLVLAPTRELAQQTAKVF 140

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNG--AHIVVGTPGRLCDHIRGKGLNISHLKAV 152
           E      GV      GG     +++ +Q G    ++V TPGRL D +    + +  +  +
Sbjct: 141 EDAGTACGVRCVCVYGGAPKWEQKKLMQQGGGCAVIVATPGRLRDFMNDGDVKLDKVTML 200

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           VLDEAD MLDLGF  +I  I   +   R+ +MFSAT   +I  LA  +  + V+V I +E
Sbjct: 201 VLDEADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPTSIQGLAAEFMCNPVKVRIGAE 260

Query: 213 NRQHSDIDYRAV-LVALSDRDNAIVNILR-YHGAKNAI----VFCSTRASVSRFTKVLAE 266
             + S    + V +V  +++D  +  +L+ Y G K  +    VF   +   +R  + L  
Sbjct: 261 GLKASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPRTLVFALYKKECARLHENLRR 320

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             +Q   + G++SQ++R  +++  + G + + IATDVAARG+D+  +E VI+       E
Sbjct: 321 QNWQAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARGLDIKGVEYVINYTFPLTTE 380

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367
           + +HR GRTGRAG+ G++     Q+ + RA  L    REA   V
Sbjct: 381 DYVHRIGRTGRAGQTGLAHTFFTQHDKARAGELANVLREAGAEV 424


>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 710

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 181/337 (53%), Gaps = 6/337 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A++   +  +DV   A TGSGKT AF L     +L    R  PA+A   L
Sbjct: 167 GYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLERMLHRGPR--PAAATHVL 224

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV +  E L   T +   + +GG+S + +   L+    IVV TPGR+ DH
Sbjct: 225 VLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALRTRPEIVVATPGRVIDH 284

Query: 139 IRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +R      +  L  ++LDEAD +L++GF ++I+ I+   PKKR+ L+FSAT++  +  LA
Sbjct: 285 VRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALA 344

Query: 198 KNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
               K+  R++   + +  ++  +   +      + ++  ++ I+     K+ I+F  T+
Sbjct: 345 SLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTK 404

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R   ++     +   L G+++Q +R  AL   R G     IATDVAARG+D+P ++
Sbjct: 405 QEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVD 464

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            VI  +      + LHR GRT RAG+KG ++  + ++
Sbjct: 465 AVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEES 501


>gi|332662776|ref|YP_004445564.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331590|gb|AEE48691.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 442

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 125/374 (33%), Positives = 190/374 (50%), Gaps = 13/374 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + G    T++Q  + +  +  KDV   AQTG+GKT A+ L         
Sbjct: 7   NLNKPLLNALQDIGISTPTTIQAKVFSVVMSGKDVCGIAQTGTGKTFAYLLPCLRQY--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L I PTREL  QV   +E L     +VV    GGV++  +   L  GA
Sbjct: 64  --EYSKKKTPQVLIIVPTRELVTQVVEAVEKLSKYLSLVVVGVYGGVNLKPQAAQLAQGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D +    L    LK +V+DE DEML+LGFR  ++ I DS P++R+ L+F
Sbjct: 122 DVVVGTPGRLVDLLSNGVLKTKDLKKLVIDEFDEMLNLGFRAQLKVIFDSIPERRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L  +Y  + +R+          +ID     V       +++ +L     +
Sbjct: 182 SATLNEDVELLIADYFDNLIRIEATPVGTPLENIDQSYYPVPNFYTKVSLLKLLLTSNPE 241

Query: 246 --NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +VF ST++   R  + L E    ++  +    SQ  R  A+     G +RV IATD
Sbjct: 242 MSKVLVFVSTKSLADRVFEALDEEWGIKIQVIHSNKSQPFRFAAVNAFHAGESRVLIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+ ++  VI+ ++ S PEN +HR GRTGR  RKG+++  + +  Q     + + 
Sbjct: 302 IIARGIDVAEVTHVINFDMPSVPENYIHRIGRTGRVERKGIAISFVTEKEQEYLTEIEKL 361

Query: 363 ANVSVVWEPAPSVE 376
            N SV     P VE
Sbjct: 362 MNYSV-----PQVE 370


>gi|313224968|emb|CBY20760.1| unnamed protein product [Oikopleura dioica]
          Length = 735

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/375 (32%), Positives = 200/375 (53%), Gaps = 32/375 (8%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ E L ++ +   + +Q  +    L  +D +  +QTGSGKT+AF   L +  L
Sbjct: 314 FWGFPRIL-EHLEKQNFDKPSPIQSQLWPIALSGRDTIGISQTGSGKTLAFLAPLVAHCL 372

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQ 122
                   A  P+ L IAPTRELA Q+  +++ ++  K  +   + +GG     +   LQ
Sbjct: 373 Y------GAGEPMGLIIAPTRELANQIKEQVDQVFDNKRPMTTMLAVGGTDRREDITRLQ 426

Query: 123 NGA--HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PK 178
           +G+   IV+GTPGRL D      L +     VVLDEAD+MLD GFR DIE ++D S  PK
Sbjct: 427 DGSPPTIVIGTPGRLMDLSDMGELKLHKCTYVVLDEADKMLDQGFRGDIEKLIDQSNIPK 486

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIV 236
           KR+++M SAT    I   AK Y   A+++ +   +        ++V+   +D +    + 
Sbjct: 487 KRQIIMTSATWPVEIQKFAKQYMSKALKIIVGKFDLTCVKTVVQSVIKVGNDNEKFRELY 546

Query: 237 NILR-------YHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            +++       + G K+ +  V+   R +  +F+KV+        ++ G+  Q +R+ AL
Sbjct: 547 EVIKRDWKLMVFCGRKDTVDAVYDQLRRTYRKFSKVIG-------SMHGDYEQHDRTKAL 599

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSV 345
           + +++G+ +V + TDVAARGID+ D+  V   +L+ N ++  HR GRTGRAGR G   ++
Sbjct: 600 KKLKNGQTQVMVCTDVAARGIDVKDITHVFSYDLAVNIDDHCHRIGRTGRAGRHGKACTL 659

Query: 346 FVIPQNMQRRAERLF 360
           F +  N   +   LF
Sbjct: 660 FNVGDNRDLKKADLF 674


>gi|300724118|ref|YP_003713435.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297630652|emb|CBJ91317.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 446

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 200/381 (52%), Gaps = 12/381 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+++GY   T++Q A +   +  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALNDKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAIQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  + + L A T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVAEQAKELAAHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF +D+E I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +I   A+    D V ++     R+   I    YRA    L  +   + ++L+      +I
Sbjct: 195 SIRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRA--DTLEHKMALLCHLLQKSDVTKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L++   Q   L GE+ Q +R++A++ + DG+  V +ATDVA+RG+
Sbjct: 253 VFVRKRERVREVADWLSQAGIQAAFLEGEMVQAKRTDAVKRLNDGKVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---- 364
           D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++  +      ++ R  N    
Sbjct: 313 DIEDVSHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGKISRYLNEPMK 372

Query: 365 VSVVWEPAPSVEAIRERDAQR 385
           + VV E  P  +A  E+ + +
Sbjct: 373 IRVVDELRPQTKAPSEKKSYK 393


>gi|242023199|ref|XP_002432023.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517381|gb|EEB19285.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 755

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/363 (32%), Positives = 184/363 (50%), Gaps = 36/363 (9%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE  N P  +   + ++G++  T++Q       L  +D++  AQTGSGKT+A+ L  A
Sbjct: 143 QTFEESNFPANVMAVIKKQGFLKPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYALP-A 201

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  +      S    P+AL +APTRELA Q+    +   A   +      GG     + R
Sbjct: 202 TVHITNQKPLSKGDGPIALVLAPTRELAQQIQSVAKDFGASCSIRNTCIFGGAPKGSQAR 261

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 262 DLERGVEIVIATPGRLIDFLDKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 321

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRD 232
           R++LM+SAT    + TLA+++  D +++NI S +       RQH ++      +  S+++
Sbjct: 322 RQVLMWSATWPKEVQTLAEDFLHDYIQINIGSLSLAANHNIRQHVEV------MQDSEKE 375

Query: 233 NAIVNILRYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
             + N+LR  G       ++F  T+  V    +++ +  F  + + G+ SQQER + L  
Sbjct: 376 GRLTNLLRDIGGDRNNKILIFVETKKKVDDIARLVKQEGFPAICMHGDKSQQERDHVLNE 435

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
            R G+  V +ATDVAARG        + H          +HR GRTGR+ + G +  F  
Sbjct: 436 FRSGKCAVLVATDVAARG-------KIRH---------YVHRIGRTGRSSQMGTAFTFFT 479

Query: 349 PQN 351
           PQN
Sbjct: 480 PQN 482


>gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 421

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAA G+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 197/379 (51%), Gaps = 10/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDE D MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSVVWEPAPSVE 376
            + REAN ++  +   SVE
Sbjct: 458 SVLREANQAINPKLLQSVE 476


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDTGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|71020299|ref|XP_760380.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
 gi|74700904|sp|Q4P6N0|HAS1_USTMA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46100049|gb|EAK85282.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
          Length = 517

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 191/352 (54%), Gaps = 20/352 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  +T VQ   + P +  KDVL +AQTGSGKT++F +     L     +F P 
Sbjct: 63  KAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEML--HRLKFKPR 120

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   A+ I+PTRELA+Q+    + L A       + +GG +   E   LQ G +++V TP
Sbjct: 121 NGTGAIIISPTRELALQIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNLIVATP 180

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATIS 190
           GRL DH++  KG   S+LKA+ +DEAD +L++GF D++  I+   P   R+ ++FSAT +
Sbjct: 181 GRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILPNDNRQSMLFSATQT 240

Query: 191 PAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAV-------LVALSDRDNAIV-NILRY 241
             +  LA+ + +   + +N+      H+D+    V       +V  SDR   ++   L+ 
Sbjct: 241 TKVQDLARISLRPGPLYINV------HADLAASTVSRLEQGYVVCESDRRFLLLFTFLKK 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV   + +L      V+ L G+  QQ+R+N      +      + T
Sbjct: 295 NAGKKIIVFMSSCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYCNAPCGTLLCT 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           DVAARG+D+P ++ +I  +   +P + +HR GRT RAG  G S +F++P  +
Sbjct: 355 DVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLFLLPTEL 406


>gi|189203493|ref|XP_001938082.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330914916|ref|XP_003296835.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
 gi|187985181|gb|EDU50669.1| ATP-dependent RNA helicase eIF4A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311330840|gb|EFQ95065.1| hypothetical protein PTT_07032 [Pyrenophora teres f. teres 0-1]
          Length = 396

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +   STL   +   S   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSI---STLQKID---SNVKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMDIQCHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   D + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   D   P 
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---DLSGPR 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  ++++     T +   +  GG     +   L+    +++GTP
Sbjct: 70  VEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FSAT    
Sbjct: 130 GRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGA 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIV 249
           A+  +     KD   + + S + Q ++   + ++ A  D+    +   +L       AI+
Sbjct: 190 ALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAII 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+D
Sbjct: 249 FTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 309 IDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN 350


>gi|228920836|ref|ZP_04084175.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838767|gb|EEM84069.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 389

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKVEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 167/316 (52%), Gaps = 8/316 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + +L      S ++    PL   ++PTRELA+Q   E 
Sbjct: 120 RDLMACAQTGSGKTAAFXLPIXTGMLTNAGAVSCSNVIQEPLTXIVSPTRELAIQXYNEA 179

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                 T +   V  GG  V  +  ++Q GA IVV TPGRL D I    + +  L  +VL
Sbjct: 180 RKFCRMTTLRPVVVYGGTXVSYQMSEVQKGAGIVVATPGRLHDFINRGYIGLGKLCYLVL 239

Query: 155 DEADEMLDLGFRDDIEFILD--SSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           DEAD MLD+GF  +I+ ++D    PKK  R+ LMFSAT    +   A  Y  D + + + 
Sbjct: 240 DEADRMLDMGFGPEIQKLIDHPHXPKKGDRQTLMFSATFPNXVQERAGMYLNDYLFLXVG 299

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLF 269
                 SDI+ R   V    +   +++ILR     +  +VF  T+ +      +L++  F
Sbjct: 300 RVGGAASDIEQRVFQVEQFAKREKLMDILREQKDDDRTLVFVETKRNADFLASLLSQSGF 359

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
              ++ G+  QQER  AL     G+A + +AT VAARG+D+P ++ V++ +L    +  +
Sbjct: 360 PTTSIHGDRMQQEREEALHHFXIGKAPILVATSVAARGLDIPGVKHVVNYDLPDVIDEYV 419

Query: 330 HRSGRTGRAGRKGMSV 345
           HR GRTGR G  G S 
Sbjct: 420 HRIGRTGRVGNLGRST 435


>gi|74691634|sp|Q74Z73|HAS1_ASHGO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 504

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 196/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L     L   + +F P 
Sbjct: 52  KAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEML--HSLKFKPR 109

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 110 NGTGVIVITPTRELALQIFGVARELMEFHSQT---FGIVIGGANRRQEAEKLAKGVNLLI 166

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  KG    +LKA+V+DEAD +L++GF D+++ I+   P + R+ ++FSA
Sbjct: 167 ATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSA 226

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSD-RDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+ SE    + D   +  +V  SD R   +   L+    
Sbjct: 227 TQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFTFLKKFQN 286

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + TDVA
Sbjct: 287 KKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVA 346

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT +  + KG S+ F+ P  +
Sbjct: 347 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAKGTKGKGKSLMFLTPHEL 396


>gi|87120846|ref|ZP_01076739.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86164074|gb|EAQ65346.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 443

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 177/350 (50%), Gaps = 16/350 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+++ GY   TS+Q+  +   L ++++L ++QTG+GKT +F L L   L   N R++
Sbjct: 12  ILNAVAKLGYTQPTSIQKQAIPAILLDRNLLAASQTGTGKTASFVLPLLEKLF-RNRRYN 70

Query: 71  PASAPLA-----LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA QV   +     +         GGV    ++  L  G 
Sbjct: 71  GQTKVRGKRVRILVLTPTRELATQVEESIAEYGKELDFTSMALYGGVDEVPQKERLIEGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             +V TPGRL D +  + L+   ++ +VLDEAD MLD+GF DDI  I+D  P  R+ L+F
Sbjct: 131 DFLVATPGRLVDMVHQRALHFDEVETLVLDEADRMLDMGFIDDIYNIIDRLPDDRQNLLF 190

Query: 186 SATISPAITTLA----------KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           SAT++  +  L+          K +  D + +NI+ +    S ID   + V    +   +
Sbjct: 191 SATLNDHVRNLSTTFSGVGMENKEFYDDLLEINISPKETSASSIDQCLITVDKDTKSALL 250

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++++      A++F   +   ++    L +   +   + G+ SQ  R   L   + G  
Sbjct: 251 SHLIKEQEWDQALIFIEKKHGAAKLVSQLEKRGIKADCIHGDRSQSMREKVLAEFKSGEL 310

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +AT VAARGID+ DL  V++ +L   PE  +HR GRTGRAG  G +V
Sbjct: 311 KYLVATGVAARGIDIGDLTRVVNYDLPFKPEEYIHRIGRTGRAGAAGEAV 360


>gi|255715335|ref|XP_002553949.1| KLTH0E10890p [Lachancea thermotolerans]
 gi|238935331|emb|CAR23512.1| KLTH0E10890p [Lachancea thermotolerans]
          Length = 589

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 197/367 (53%), Gaps = 15/367 (4%)

Query: 6   NIP-QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALAST 61
           +IP +++G   ++  Y+  T +Q A +   L  +D +  A TGSGKT+AF    L   + 
Sbjct: 192 SIPTEIVGIIETKLKYLEPTPIQRATIPNVLNGRDFVGVAATGSGKTLAFLIPPLCQLNN 251

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRE 117
               ND  +    P AL +APTRELA Q+  E    +++L+  T VV  V  GG SV   
Sbjct: 252 TPPLND-ITKMDGPSALILAPTRELAQQIEAEANKVVKFLHRPTKVVSLV--GGHSVEEI 308

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DS 175
              L +G  I+V TPGRL D +    L +  ++ ++LDEAD M+D GF D +  IL    
Sbjct: 309 SYSLSHGCDILVATPGRLIDCLESNILVLQQVRTLILDEADRMIDFGFEDQLTTILARTE 368

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S K R+ +MF+AT+S  I  +A  Y      V + S++ +         L +   R + +
Sbjct: 369 SVKGRQTMMFTATMSSTIERIANGYLNKPAYVRVGSQDTKAQIKQVVQYLPSEEQRFSRL 428

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              +        ++F + + +      K  +E  ++V  L G  SQ++R ++L ++R G+
Sbjct: 429 CRDVLPRFRSPIMIFINYKRTADWLAAKFSSETRYRVTTLHGSKSQEQREHSLNLLRSGK 488

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A + IATDVA RGID+P++ LV++ ++ ++ E  +HR GRTGRAG+ G ++ F+  ++  
Sbjct: 489 ADIMIATDVAGRGIDIPNVSLVVNFQMCTSFEGYIHRIGRTGRAGKSGCALTFLTERDEP 548

Query: 354 RRAERLF 360
           +  E LF
Sbjct: 549 KVVEELF 555


>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
 gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
          Length = 436

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 179/354 (50%), Gaps = 26/354 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ EA     +   T +Q   +   L  KDV+  A+TGSGKT  F L +  +LL +  R 
Sbjct: 31  VLCEACEHLKWTTPTKIQTEAIPLALEGKDVIGLAETGSGKTGTFALPILQSLLEKPQRL 90

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA Q+  + E L +  G+   V +GG+ +  +   L    H+++
Sbjct: 91  ------FALVLTPTRELAFQISEQFEALGSSIGIKCVVVVGGIDMVTQALQLAKKPHVII 144

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+   KG N+  LK +V                + IL   P++R   +FSAT
Sbjct: 145 ATPGRLVDHLENTKGFNLRALKYLV----------------DKILKVIPRERHTYLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +    + V+V + S+ +    +    + +    +D  +V+IL      + +
Sbjct: 189 MTKKVAKLQRASLSNPVKVEVNSKYKTVDTLQQSYLFIPSKYKDVYLVSILNELAGNSFM 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCST  +  R   +L    F  + L G+LSQ  R  AL   +     + IATDVA+RG+
Sbjct: 249 VFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGALHKFKAKSRSILIATDVASRGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359
           D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q    + +R E L
Sbjct: 309 DIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHL 362


>gi|332025702|gb|EGI65860.1| ATP-dependent RNA helicase DDX42 [Acromyrmex echinatior]
          Length = 752

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 177/331 (53%), Gaps = 4/331 (1%)

Query: 34  DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
           +L  +D++  A+TGSGKT AF   +   ++ + +       P+ L +APTREL+ Q+ +E
Sbjct: 272 NLSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRE-LKAGDGPIGLILAPTRELSQQIYQE 330

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            +       + V  C GG S   + + L++GA IVV TPGR+ D ++ K  N++ +  +V
Sbjct: 331 AKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATPGRMIDLVKMKATNLTRVTFLV 390

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEAD M D+GF   +  I +     R+ L+FSAT    +  LA++   D +R+      
Sbjct: 391 LDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPIRIVQGDVG 450

Query: 214 RQHSDIDYRAVLVA--LSDRDNAIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
             ++D+    ++     S + N ++ N + +  A + ++F + + +       L    F+
Sbjct: 451 EANTDVTQHVIMFHNNPSGKWNWLLQNYIEFLSAGSLLIFVTKKLNAEELANNLKLKEFE 510

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           V+ L G++ Q ER+  +   +       +ATDVAARG+D+P ++ V++ +++ + +   H
Sbjct: 511 VLLLHGDMDQIERNKVITAFKKKEVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTH 570

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           R GRTGRAG KG +  ++ +  +  A  L R
Sbjct: 571 RIGRTGRAGEKGTAYTLVTEKDKEFAGHLVR 601


>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
 gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
          Length = 699

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 191/352 (54%), Gaps = 15/352 (4%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 277 QCFAEYPDMLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 335

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T      R +   A + L +APTRELA+Q+  E+   Y+  G+      GG   + +  D
Sbjct: 336 TEYQSTPRGTRGGANV-LVLAPTRELALQIEMEVN-KYSFRGMKAVCVYGGGDRNMQISD 393

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKK 179
           L+ GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I + ILD  P  
Sbjct: 394 LERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVILDIRP-D 452

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSD---RDNA 234
           R+ +M SAT  P +  LA++Y K+ ++V + S +    HS    + V+  + D   + N 
Sbjct: 453 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHS---VKQVIKLMEDDMAKFNT 509

Query: 235 IVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           I + ++   + +  I+FC  +      +  L    F    + G   Q +R  A+  ++ G
Sbjct: 510 ITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSG 569

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R+ +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+
Sbjct: 570 VVRILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSI 621


>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 564

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 193/364 (53%), Gaps = 26/364 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +A  ++GY + T+VQ  I+   +  KDVL S+ TGSGKT AF L +       +N ++S 
Sbjct: 129 KACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQRFGNLKNLQYSK 188

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A     L I PTRELA+Q     E L        A+ IG V + ++  +L+    I++ T
Sbjct: 189 A-----LIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRKYPDIIIAT 243

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR  D +     L I +++ +V DEAD ++++GF  +I  IL ++ K R+ ++ SAT++
Sbjct: 244 PGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQTVLISATLN 303

Query: 191 PAITTLAKNYQKDAVRVNI------ASENRQH-----SDIDYRAVLVALSDRDNAIVNIL 239
             +  L+     + ++VN+      A   +Q+     S+ D        SDR+  ++ +L
Sbjct: 304 ATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQD--------SDREATLITLL 355

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  I+F  T+    R   VL         L G LSQQ+R  A +  ++G+ +  +
Sbjct: 356 KTKFKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFLL 415

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+DL D++ VI+ E+       +HR GRT R G +G+SV +  +N   + +++
Sbjct: 416 ATDLAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVKFKKM 475

Query: 360 FREA 363
            R++
Sbjct: 476 IRQS 479


>gi|169829133|ref|YP_001699291.1| ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus C3-41]
 gi|168993621|gb|ACA41161.1| Probable ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus
           C3-41]
          Length = 434

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 171/340 (50%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A++E G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 9   NFQPFLQDAIAELGFTEPTPIQKEIIPLILKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 69  KQEVQ------AVITSPTRELAQQIYDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 123 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFVF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y    V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 183 SATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSKSRNKRLLEVIEGINPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR S       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 243 LAVIFTNTRKSAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLEYQYIVATDLAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++
Sbjct: 303 RGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAI 342


>gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 487

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 183/340 (53%), Gaps = 4/340 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+  +  P 
Sbjct: 14  KAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRF-ADAPKIRPK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               A+ + PTRELA+QV   +   YAK   + A+ + GGV    +++ L  G  ++V T
Sbjct: 73  RV-RAIILTPTRELALQVEENINQ-YAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FSAT+S 
Sbjct: 131 PGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFSATLSK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++ +    A++F 
Sbjct: 191 QVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQENNWSQALIFI 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L +      A     SQ  R   L   + G+    +AT VA+RGID+ 
Sbjct: 251 QTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDID 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            L  VI+ +L    ++ +HR GRTGRAG +G ++  + ++
Sbjct: 311 ALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKD 350


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 177/338 (52%), Gaps = 11/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP----ASA 74
           GY   T +Q   +   +  +D++  AQTGSGKT AF L +   +LA     S      + 
Sbjct: 259 GYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILHGILASGGGNSGSMSSTAE 318

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA+Q+  E       + V   VC GG S++ + R LQNG  ++V TPGR
Sbjct: 319 PSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQYRQLQNGCAVLVATPGR 378

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATIS 190
           L D +    ++ S +K +VLDEAD MLD+GF  DIE I++        +R+ L+FSAT  
Sbjct: 379 LNDFVTRGRVSFSSVKYLVLDEADRMLDMGFIGDIEKIVNHQTMPAVGQRQTLLFSATFP 438

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247
             I TLA N+ ++ V   + +    ++D+    + V    +   +++ +     +G    
Sbjct: 439 EEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIEEFMANGDNKV 498

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +      +L+       ++ G+  Q +R  AL   + G   + +AT VAARG
Sbjct: 499 LIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQFKAGIRSILVATAVAARG 558

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  +  VI+ +L    +  +HR GRTGR G KG +V
Sbjct: 559 LDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAV 596


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 22/370 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF-----------GLALASTLLAENDR 68
           Y   T VQ+  +      +D++  AQTGSGKT  F           G    S + A+N R
Sbjct: 195 YKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPIISAAFAKGPLPTSGMQAQNPR 254

Query: 69  FSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTREL  Q+  E      ++ V  AV  GG  ++ + R +++G 
Sbjct: 255 GGYGKRKAFPTALILAPTRELVSQIHDEARKFTYRSWVRPAVVYGGADMNTQLRQIESGC 314

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSP--KKRR 181
            ++  TPGRL D I    +++S+++ +VLDEAD MLD+GF   I  I+  +  P   +R+
Sbjct: 315 DLLSATPGRLVDFIERGRISLSNIRFLVLDEADRMLDMGFEPQIRRIVTGEDMPGVHERQ 374

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    I  LAK++ KD + +++        +I  +   V  +D+ + ++++L  
Sbjct: 375 TLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKIEYVEDADKRSVLLDVLSS 434

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+         L +  F   ++ G+ SQ+ER  AL+  R  R  V +A
Sbjct: 435 MPTGGLTLVFVETKRMADMLENFLIQSNFAATSIHGDRSQRERERALETFRSSRTPVMVA 494

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           T VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S        +N+ R   
Sbjct: 495 TAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTGISTAFFNRNNKNIVRELI 554

Query: 358 RLFREANVSV 367
            L REAN  +
Sbjct: 555 DLLREANQEI 564


>gi|331217930|ref|XP_003321643.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300633|gb|EFP77224.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 646

 Score =  177 bits (448), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 195/347 (56%), Gaps = 8/347 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L  A  +L+   +F P
Sbjct: 120 AKAIQDMGFTKMTEVQARTIPPLMTGRDVLGAARTGSGKTLAF-LIPAVEMLSRL-QFKP 177

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +    + ++PTRELA+Q+    + L        A+ IGG +   E   L  G ++++ T
Sbjct: 178 RNGTGTIIVSPTRELALQIFGVAQELMKHHSQTFAIVIGGANRKAEAEKLVKGVNLLIST 237

Query: 132 PGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATI 189
           PGRL DH++  KG   S+LKA+V+DEAD +L++GF D++  I+   P + R+ ++FSAT 
Sbjct: 238 PGRLLDHLQNTKGFVFSNLKALVVDEADRILEIGFEDEMRQIISLLPSENRQSMLFSATQ 297

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +  +  LA+ + +   + +N+ ++ ++ +   ++   V+     R   +   L+    K 
Sbjct: 298 TTKVQDLARISLRPGPLYINVDADKQEATVQGLEQGYVVCDSDKRFLLLFTFLKKSLKKK 357

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF S+  SV    ++L      V+ L G+  QQ+R+N      +    + + TDVAAR
Sbjct: 358 VIVFFSSCNSVKYHAELLNYIDIPVLDLHGKQKQQKRTNTFFEFCNATTGILLCTDVAAR 417

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           G+D+P ++ +I  +   +P + +HR GRT RAG+ G S +F++P  +
Sbjct: 418 GLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSEL 464


>gi|224081379|ref|XP_002306390.1| predicted protein [Populus trichocarpa]
 gi|222855839|gb|EEE93386.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 181/341 (53%), Gaps = 23/341 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   +++Q+  L P ++ +DV+  AQ+G+GKT    L +   +         AS  + A
Sbjct: 38  GFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLV-------DTASREVQA 90

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q  R +  +     + V  CIGG SV  + R L++G H+V GTPGR+CD
Sbjct: 91  LILSPTRELAEQTQRVITVIGENINIQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCD 150

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    ++ +VLDE+DEML  GF+D I  +    P + ++++ SAT+   I  + 
Sbjct: 151 MIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEIT 210

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
             +  D V++ +  +      I  +   VA+   +     + ++        A++FC+T+
Sbjct: 211 SKFMTDPVKILVKRDELTLEGI--KQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTK 268

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD-- 312
             V   T  + E  F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+    
Sbjct: 269 RKVDWLTAKMVEFNFTVSSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQAS 328

Query: 313 --------LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                   + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 329 SLSSSSSIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 369


>gi|146414784|ref|XP_001483362.1| hypothetical protein PGUG_04091 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 433

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 187/343 (54%), Gaps = 22/343 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TS+Q   +   L  +D +  A+TGSGKT+AF   + +      D F        L + PT
Sbjct: 25  TSIQAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKW--SEDPF----GIYGLVLTPT 78

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +   L A   + VAV +GG  + ++  ++Q   H ++ TPGRL DHI   G
Sbjct: 79  RELALQIAEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHFIIATPGRLADHILNSG 138

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLMFSATISPAITTL- 196
            +    +  +K +VLDEAD +L   F  D+E  F +     KR+ L+F+AT++ A+  L 
Sbjct: 139 DDTVGGLKRIKFLVLDEADRLLSNSFGSDLERCFKILPDASKRQTLLFTATVTDAVRALK 198

Query: 197 ---AKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL---RYHGAKNAI 248
                  +K      I S+++    + +    V V    ++  + NIL   +Y  A  AI
Sbjct: 199 DKPVPEGKKPVFIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVLPKYEKAL-AI 257

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +   +     + L +   +V +L  E+ Q ER+N+L   R G ARV IATDVA+RG+
Sbjct: 258 VFVNRTYTAEILRRTLRKLDIRVASLHSEMPQSERTNSLHRFRAGAARVLIATDVASRGL 317

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+P++ELV++ ++ ++P++ +HR GRT RAG+KG SV ++ + 
Sbjct: 318 DIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEK 360


>gi|307214659|gb|EFN89598.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
          Length = 377

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 184/320 (57%), Gaps = 9/320 (2%)

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    HI++ TPGRL
Sbjct: 13  FALVLTPTRELAFQISEQFEALGSSIGVKCAVLVGGMDMSAQALLLSKKPHIIITTPGRL 72

Query: 136 CDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
            D++   KG ++ +LK +V+ EAD +L++ F  +++ IL   P++RR L+FSAT++  + 
Sbjct: 73  VDYLENTKGFSLQNLKFLVMGEADRILNMDFEIEVDKILRVIPRERRTLLFSATMTKKVQ 132

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L +   ++ V+V ++++ +    +    + + +  +D  +V+IL      + ++FC+T 
Sbjct: 133 KLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFMIFCATC 192

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG+D+P ++
Sbjct: 193 NNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKARNRSILISTDVASRGLDIPHVD 252

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVVWEP 371
           +VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q    + +R E+L  +     +W  
Sbjct: 253 IVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQ--LPLWPT 310

Query: 372 AP-SVEAIRER--DAQRILQ 388
               V  ++ER  +AQRI++
Sbjct: 311 EEGEVMLLQERVTEAQRIVK 330


>gi|255325662|ref|ZP_05366759.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297272|gb|EET76592.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 432

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 185/369 (50%), Gaps = 7/369 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ +   L   G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A      PA  P AL +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LARL-AGTGASKPAH-PRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  ++   LDEAD+M D+GF   +  +L  +P 
Sbjct: 119 RSLARPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPV 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           + + L+FSAT+   +  L + +  D V  + A        + +    V   + R+  ++ 
Sbjct: 179 QGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERTARNEVVLR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I    G    I+F  T+  V R  K L         L G+  Q  R+ A++   DG   V
Sbjct: 239 IAARQG--KTIMFMRTKHGVDRQVKKLRRSGINAYPLHGDKGQGARTRAIEGFADGSIPV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+ LV+HA+  +  +  LHR+GRT R G  G  + ++    ++  +
Sbjct: 297 LVATDIAARGIDIADVSLVVHADPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVD 356

Query: 358 RLFREANVS 366
            L ++A V+
Sbjct: 357 ALIKKAGVT 365


>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
          Length = 465

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 178/340 (52%), Gaps = 25/340 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L +   L+ +       
Sbjct: 69  EACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKPQSL--- 125

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L +APTRELA Q+    E L +   V  AV +GG+ +  +   L    HIVV TP
Sbjct: 126 ---FGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAIALGKKPHIVVATP 182

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH+   KG ++ +LK +V+DEAD +LDL F   ++ IL   P++RR  +FSAT+S 
Sbjct: 183 GRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYLFSATMSS 242

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAIVF 250
            + +L         R +++S  R  S I      L  LS         L  +  ++AIVF
Sbjct: 243 KVESLQ--------RASLSSGLRLPSFIPTNIKTLPRLS---------LNEYAGQSAIVF 285

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T     R   +L    F  + L G+LSQ  R  AL   R     + +ATDVAARG+D+
Sbjct: 286 TRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDI 345

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++V++ +L  + +  +HR GRT RAG+ G +  ++ Q
Sbjct: 346 PSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQ 385


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 193/363 (53%), Gaps = 15/363 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +    
Sbjct: 246 PHIIDE-MKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQP 303

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                  P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G 
Sbjct: 304 PIMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLERGV 363

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M+
Sbjct: 364 EVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMW 423

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR---- 240
           SAT    +  LA ++  D +++NI S N   + +I     +   +++   +V +L+    
Sbjct: 424 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMVRLLKDIAP 483

Query: 241 -----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                 +     I+F  T+  V    +++    +   ++ G+ SQ ER + L+  R+G++
Sbjct: 484 TTNNAANNGNKIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVLKDFRNGKS 543

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++
Sbjct: 544 NILIATDVASRGLDVEDLQFVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 603

Query: 355 RAE 357
             E
Sbjct: 604 ARE 606


>gi|7211427|gb|AAF40306.1|AF156667_1 RNA helicase [Vigna radiata]
          Length = 713

 Score =  176 bits (447), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 180/340 (52%), Gaps = 14/340 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS- 73
           L E+G  +L  +Q    +  L   D++  A+TG GKT+AF L +  +L+    + S  + 
Sbjct: 144 LKEKGIESLFPIQAMTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLINGPTKSSRKTG 203

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L + PTRELA +V  + E      G+      GG   + +   L+ G  IV+G
Sbjct: 204 YGRTPSVLVLLPTRELACRVHADFEVYGGAMGLSSCCLYGGAPYNTQEIKLRRGVDIVIG 263

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSAT 188
           TPGR+ DHI    +++S LK  VLDEADEML +GF +D+E IL    +  K + L+FSAT
Sbjct: 264 TPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENVNKVQTLLFSAT 323

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILR-YHGA 244
           +   +  +A  + K D    ++    +  +  + R +++  S   R   I +I+R Y   
Sbjct: 324 LPDWVKHIAAQFLKPDKKTADLVGNTKMKASTNVRHIVLPCSAPARSQLIPDIIRCYSSG 383

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ S S+    LA  L    AL G++ Q +R   L   R G+    +AT+VA
Sbjct: 384 GRTIIFTETKESASQ----LAGLLPGARALHGDIQQAQREVTLFGFRSGKFMTLVATNVA 439

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ARG+D+ D++L+I  E     E+ +HRSGRTGRAG  G++
Sbjct: 440 ARGLDINDVQLIIQCEFPREVESYIHRSGRTGRAGNTGVA 479


>gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a]
 gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
          Length = 444

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/336 (35%), Positives = 179/336 (53%), Gaps = 8/336 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S    P 
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPPR 78

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL 
Sbjct: 79  ILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195
            +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   AI  
Sbjct: 139 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQD 198

Query: 196 LAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            A+   +D V V+     R+   I    YRA    L  +   +V++L+   A  +IVF  
Sbjct: 199 FAERLLEDPVEVSANPSTRERKKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIVFVR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+PD
Sbjct: 257 KRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPD 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V + ++  + +  LHR GRT RAGRKG ++ ++
Sbjct: 317 VSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 352


>gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 403

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 184/355 (51%), Gaps = 25/355 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  +L+E G  N  ++QE  L   L   D++  A+TG GKT+AFG+ L         
Sbjct: 3   PEIVA-SLAEAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGVPLLQ------- 54

Query: 68  RFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVV------VAVCIGGVSVHRER 118
           R + A A   P AL + PTREL +QV  +L     +  +       +    GG     + 
Sbjct: 55  RVAEAQAEDSPRALVVVPTRELCLQVTNDLAEASKQLKLADGRPTRIVSLYGGRPYEGQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  +VVGTPGRL D      L ++ ++ +VLDEADEMLDLGF  D+E I+   P 
Sbjct: 115 ATLQKGVDVVVGTPGRLLDLWSRGDLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDN 233
            ++ ++FSATI   + TLA+ +      +     ++A  + + +   YRA  +   ++D 
Sbjct: 175 GKQTMLFSATIPGPVLTLARTFMTQPTHIRAEGGDLAPVHERTTQHVYRAHAL---NKDE 231

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+  G    ++F  T+ S  +  + L    F   +L G++SQ  R  AL   R G
Sbjct: 232 LVSRFLQAEGRGTTMIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKG 291

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  + + TDVAARGID+  +  VI+     + +  +HR GRTGRAGR G ++ ++
Sbjct: 292 KIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGNAITLV 346


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 128/402 (31%), Positives = 198/402 (49%), Gaps = 29/402 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ E GY   T +QE  + P L  +DVL  AQTG+GKT A+ L +   L     +F+
Sbjct: 14  ILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMIMKL-----KFA 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA+Q+   ++     T +   V  GG+    +   L  GA I++ 
Sbjct: 69  QGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQADQLAKGADILIA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D      +    L+ +VLDEAD+M+D+GF   I  +L+  PKKR+ L+FSAT+S
Sbjct: 129 TPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKKRQNLLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYH-----GA 244
             +  L++N+     +V +  +      ++     V  L  +    +N+L+         
Sbjct: 189 EKVERLSENFLLWPTKVEVTPQATPAETVEQELYFVPNLKTK----INLLKIFVEDDPDV 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQ--VVALSGELSQQERSNALQMMRDGRARVCIATD 302
              I+FC TR       + L     +  V  L     Q  R N++   ++   R+ +ATD
Sbjct: 245 SKLIIFCRTRVVAENVYRFLLRRFNENHVKVLHANKGQNTRINSINSFKNDEVRILVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNMQRRAERL 359
           VAARGID+  +  VI+ E+    E+ +HR GRTGRA  +G ++ F  P  +   R+ E+L
Sbjct: 305 VAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYSIRKIEKL 364

Query: 360 FRE--------ANVSVVWEPAPSVEAI-RERDAQRILQDPLF 392
            R+        + V +        +AI RE D Q+  +DP F
Sbjct: 365 IRQQIPVKDIPSKVFIEDTAYEERQAIAREIDNQKRKEDPEF 406


>gi|226355208|ref|YP_002784948.1| ATP-dependent RNA helicase [Deinococcus deserti VCD115]
 gi|226317198|gb|ACO45194.1| putative ATP-dependent RNA helicase [Deinococcus deserti VCD115]
          Length = 488

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 192/360 (53%), Gaps = 39/360 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--PL 76
           G    T VQ   +   L  +DV+ +A+TGSGKT+AF +  A+  +      S A    P 
Sbjct: 29  GGRTPTPVQAGAIPALLAGRDVITTARTGSGKTLAFLIPAAARGIG----MSAARGMRPE 84

Query: 77  ALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            L I PTRELAVQ   V REL       G+      GG++  + R +  +G  ++ GTPG
Sbjct: 85  VLVITPTRELAVQIRDVAREL-------GMPAGRITGGITPAQTRSEA-SGKGLIAGTPG 136

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-----DSSPKKRRMLMFSAT 188
           RL D +    L++  L+ VVLDEADE+L LGF  D+  IL      ++P   +M M SAT
Sbjct: 137 RLKDLVNKGELDLRGLRYVVLDEADELLSLGFLKDVGDILRAAQRAAAPTHLQMAMASAT 196

Query: 189 ISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRA-----VLVALSDRDNAIVNIL 239
              AI ++A+ + K   R++I  +     R   DI   A     +LV  S  D   V   
Sbjct: 197 FPAAIRSVAEQFMKSPERIDIMPDPTVAARADEDILGGATGATHLLVNTSRADVLDVTAE 256

Query: 240 RYHGAKNA-----IVFCSTRASVSRFTKVLAEHLFQ--VVALSGELSQQERSNALQMMRD 292
               A  A     ++FC T+  V R  + L   L    V  L G + Q++R   +Q +RD
Sbjct: 257 HVRDALKAPGGCVVIFCRTKHLVKRRAEQLQAMLPGELVSPLQGNMDQKKRERTMQQLRD 316

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           G++RV IATD+A RGIDLP++ +VIH ++++  E+ +HRSGRT RAGR G++ V +IP+ 
Sbjct: 317 GQSRVLIATDIAGRGIDLPEVRIVIHMDVAATAEDHVHRSGRTARAGRPGVNLVLLIPEQ 376


>gi|312139814|ref|YP_004007150.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889153|emb|CBH48466.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 448

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 176/362 (48%), Gaps = 5/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P ++  AL   G      +Q A +   L  +DVL    TGSGKT+AFGL L   L   
Sbjct: 13  GLPPILVHALGRAGISAPFPIQAATIPDILAGRDVLGRGPTGSGKTLAFGLPLLVRLKGG 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    S P A+ +APTRELA Q+ + L+      G+  A  +GGV    +   L    
Sbjct: 73  ASR---PSRPRAVVLAPTRELAAQIEKALDEPALALGLRTATIVGGVPFKAQAVKLSRTV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL DH+    + +  ++   +DEAD M +LGF   +  ILD +P+  + L+F
Sbjct: 130 DVVIATPGRLADHVSQGTIALDDVRITTVDEADHMAELGFLPQVTEILDRTPETAQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + TL   Y  D V    A        +++  + V    +   +  I    G  
Sbjct: 190 SATLDGEVDTLVARYLHDPVTHATAEAVAAVDSMEHHVLHVPREIKYPTVARIAAREG-- 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+A V R T  L         L G+  Q  R+  L     G   V +ATDVAA
Sbjct: 248 RTLLFVRTKAGVDRLTDELRAVGIAAGGLHGDKPQGHRTRVLAEFAGGTLPVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  + P+  LHR+GRT RAG  G+ V V+ +  +  A ++ R A V
Sbjct: 308 RGIHVDDVSLVVHVDPPTEPKAYLHRAGRTARAGESGVVVTVVTEEERGPAAKVMRAAGV 367

Query: 366 SV 367
            V
Sbjct: 368 DV 369


>gi|75319612|sp|Q41382|RH7_SPIOL RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|1488647|emb|CAA68193.1| RNA helicase [Spinacia oleracea]
          Length = 685

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/351 (33%), Positives = 187/351 (53%), Gaps = 14/351 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           I + + + L  +G   L  +Q    +  +   D++  A+TG GKT+AF L +  +L+   
Sbjct: 114 ISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGR 173

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  R      P  L + PTRELA QV  + +      G+      GG   H +   L 
Sbjct: 174 TKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLT 233

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKR 180
            G  IVVGTPGR+ D +    L +  L   VLDEADEML +GF DD+E IL       K 
Sbjct: 234 RGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKV 293

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLV--ALSDRDNAIVN 237
           + L+FSAT+   +  ++  + K A + V++ S+ +  + I  R +++  + S R + I +
Sbjct: 294 QTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPD 353

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R +G+   +I+F  T+ S S+    LA  L     L G++ Q +R   L+  R G+  
Sbjct: 354 IIRCYGSGGRSIIFTETKESASQ----LAGLLTGARPLHGDIQQTQREVTLKGFRTGKFM 409

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +AT+VAARG+D+ D++L+I  E   + E+ +HRSGRTGRAG  G++V +
Sbjct: 410 TLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVML 460


>gi|1488521|emb|CAA68194.1| RNA helicase [Arabidopsis thaliana]
          Length = 671

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 196/378 (51%), Gaps = 19/378 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDR- 68
           E L   G   L  +Q +  +  L   D++  A+TG GKT+AF L +  +L+   A++ R 
Sbjct: 109 EKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRK 168

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                +P  L + PTRELA QV  + +      G+      GG S+  +   L+ G  IV
Sbjct: 169 MGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSIPVQEGKLKRGVDIV 228

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKRRMLM 184
           VGTPGR+ DHI  + L+ S+ K  VLDEADEML +GF +D+E IL    DS+  K + L+
Sbjct: 229 VGTPGRIKDHIERQNLDFSYFKFRVLDEADEMLRMGFVEDVELILGKVEDST--KVQTLL 286

Query: 185 FSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILR- 240
           FSAT+   +  ++  + ++D   +++   ++  +    R + +  +    A  I +I+  
Sbjct: 287 FSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISC 346

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      I+F  T+  VS  + +L        AL GE+ Q +R   L   R+G+    +A
Sbjct: 347 YSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVA 402

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+ D++L+I  E     E  +HRSGRTGRAG  G+ V  +  + +    R+ 
Sbjct: 403 TNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPV-TLYDSRKSSVSRIE 461

Query: 361 REANVSVVWEPAPSVEAI 378
           +EA +      AP  + I
Sbjct: 462 KEAGIKFEHLAAPQPDEI 479


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 182/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  KD   V+  S  R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
 gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
          Length = 683

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 195/377 (51%), Gaps = 12/377 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE + ++G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 265 QCFAEYPDLLGE-IQKQGFSKPSPIQAQAWPILLQGLDMIGIAQTGTGKTLAFLLPGMIH 323

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
           T      R     A + L +APTRELA+Q+  E+     +   + AVC+ GG     +  
Sbjct: 324 TEYQSTPRGQRGGANV-LVLAPTRELALQIEMEVNKYSFRN--MRAVCVYGGGCRKMQIS 380

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D++ GA I++ TPGRL D ++ K +++S +  +VLDEAD MLD+GF   I  IL   P  
Sbjct: 381 DVERGAEIIICTPGRLNDLVQAKVIDVSTITYLVLDEADRMLDMGFEPQIRKILLDIPPN 440

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           R+ +M SAT  P +  LA +Y  + + V + S +    HS       L    ++   I +
Sbjct: 441 RQTIMTSATWPPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQFLEDDKEKYRTIKS 500

Query: 238 ILRYHGAKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  G  + I+ FC  +A     +  L    F    + G   Q +R  A+  ++ G   
Sbjct: 501 FIKNMGESDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQNDREQAIADIKSGVVH 560

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQ 353
           + +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I +    M 
Sbjct: 561 ILVATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMA 620

Query: 354 RRAERLFREANVSVVWE 370
               ++  EA+  V+ E
Sbjct: 621 HELIKILEEADQEVLPE 637


>gi|170064174|ref|XP_001867417.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167881558|gb|EDS44941.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 663

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 183/350 (52%), Gaps = 6/350 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   ++ +GY   T +Q    +     +D++  A+TGSGKT+A+ L  A   ++  
Sbjct: 85  FPSSILAEITRQGYKEPTQIQAVGWSIATSGRDMVGIAKTGSGKTLAYILP-ALIHISNQ 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+AL +APTRELA Q+ +  +    +  V+     GG S   +  DL+ G  
Sbjct: 144 PRLMRGDGPIALVLAPTRELAQQIQQVCDDFGRRMSVMNTCIFGGASKMGQANDLRRGVE 203

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 204 IVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLMWS 263

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR---YH 242
           AT    I  LA+ + +D +++NI S N   ++   + +      ++++ +  +L      
Sbjct: 264 ATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIECCQEYEKESRLFKLLAEIGKQ 323

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   AIVF  T+  V +   ++  + ++   + G+ +Q++R   L   R     + +ATD
Sbjct: 324 GDNKAIVFVETKRKVDQIAGIIKRNGWRADGIHGDKTQKDRDYVLNTFRRMNNGILVATD 383

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           VA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG +  F  P N
Sbjct: 384 VASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTAYTFFTPAN 433


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G +   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGNATTFI 536


>gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 487

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 181/337 (53%), Gaps = 4/337 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+  +  P 
Sbjct: 14  KAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRF-ADAPKIRPK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               A+ + PTRELA+QV   +   YAK   + A+ + GGV    +++ L  G  ++V T
Sbjct: 73  RV-RAIILTPTRELALQVEENINQ-YAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FSAT+S 
Sbjct: 131 PGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFSATLSK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++ +    A++F 
Sbjct: 191 QVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQENNWSQALIFI 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L +      A     SQ  R   L   + G+    +AT VA+RGID+ 
Sbjct: 251 QTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDID 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            L  VI+ +L    ++ +HR GRTGRAG +G ++  +
Sbjct: 311 ALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFV 347


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 174/328 (53%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +D +  AQ+G+GKT    L +   +              AL
Sbjct: 41  GFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALTVCQMIDIATREVQ------AL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     V    CIGG S+  + R L+ G H+V GTPGR+ D 
Sbjct: 95  ILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVYDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDE+DEML  GF+D I  +    P + ++++ SAT+   I  +  
Sbjct: 155 IKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLVSATLPHEILEMTN 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 215 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LVI
Sbjct: 275 DWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRVLITTDVWARGLDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +L +N E  +HR GR+GR GRKG+++
Sbjct: 335 NYDLPNNRELYIHRIGRSGRFGRKGVAI 362


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 200/372 (53%), Gaps = 20/372 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF L L  
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFLLPLLH 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLAE+    P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 66  RLLAED---KPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P + 
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAEL 182

Query: 181 RMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--LSDRDN 233
           + L+FSAT S A     I  + +  Q   +R+N   E  ++     + V+ A  ++ ++ 
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQ--VLRLNQVGELNENV---RQQVITADDVAHKEQ 237

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G
Sbjct: 238 LLQWLLSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQG 297

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
             ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     
Sbjct: 298 AVKILVATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDW 357

Query: 351 NMQRRAERLFRE 362
           N+    ER  ++
Sbjct: 358 NLMSSVERYLKQ 369


>gi|327440903|dbj|BAK17268.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 436

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 173/335 (51%), Gaps = 6/335 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+++ G+   T +Q+ ++   L+ K  +  A TG+GKT +F L +   ++ E     
Sbjct: 13  LQDAIAKLGFTEPTPIQKEMIPLVLKGKSAIGQAHTGTGKTHSFLLPIVERIVEEKQEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+  +PTRELA Q+   L  L   T +   + IGG    R    L+    IVVG
Sbjct: 73  ------AVITSPTRELAQQIFDALNQLVEGTEISTKLFIGGTDKQRTIDRLKTQPQIVVG 126

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D ++   L +     +V+DEAD   D+GF +DI+      P+K  M +FSATI 
Sbjct: 127 TPGRIKDLVKENALLVHTAPILVVDEADLAFDMGFIEDIDGFASHMPEKLEMFVFSATIP 186

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y    + +++  +      ID+  V V    R+  ++ +++      A++F
Sbjct: 187 EKLKPFLKKYMDSPIHIHMNDKRPVAEGIDFVLVPVRSKARNTRLLEVIKGINPFLAVIF 246

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR +       LAE   +   + G+LS ++R   ++ +RD   +  +ATD+AARGID+
Sbjct: 247 CNTRKNAESVASFLAEQGIRAGQIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARGIDI 306

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +  VI+ E+  + E  +HR GRT RAG KG ++
Sbjct: 307 QGISHVINYEIPEDLEFFIHRVGRTARAGSKGTAI 341


>gi|229155721|ref|ZP_04283827.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
 gi|228627707|gb|EEK84428.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
          Length = 389

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAETSKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|19387223|gb|AAL87142.1|AF479823_1 DEAD box RNA helicase Vasa [Pantodon buchholzi]
          Length = 394

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 118/321 (36%), Positives = 172/321 (53%), Gaps = 13/321 (4%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+     + RFS    P A+ +APTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQQLMTSGVASSRFSEVQEPEAIVVAPTRELINQIYLEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGK-GLNISHLKAVVLD 155
              T V   V  GG S     R++  G +I+ GTPGRL D I RGK GLN   L+ +VLD
Sbjct: 61  AFGTCVRPVVVYGGTSTMYTIREVLKGCNILCGTPGRLLDIIGRGKVGLN--KLRYLVLD 118

Query: 156 EADEMLDLGFRDDIEFILDSS---PKK-RRMLMFSATISPAITTLAKNY-QKDAVRVNIA 210
           EAD MLD+GF  D+  ++ S    PK+ R+ LMFSAT    I  LA ++ ++D + + + 
Sbjct: 119 EADRMLDMGFEPDMRRLVASPGMPPKEERQTLMFSATYPEDIQRLAADFLKRDYLFLVVG 178

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                 +D++   V V+   +   +V ILR  G +  +VF  T+         L +    
Sbjct: 179 QVGGACNDVEQHVVEVSQYSKREQLVEILRTTGNERTMVFVETKRKADFIATFLCQEQIS 238

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             ++ G+  Q+ER  AL   R G+  V +AT VAARG+D+  ++ V++ +L S  +  +H
Sbjct: 239 TTSIHGDREQREREQALGDFRSGKCPVLVATSVAARGLDIEHVQHVVNFDLPSTIDEYVH 298

Query: 331 RSGRTGRAGRKGMSV-FVIPQ 350
           R GRTGR G  G ++ F  P+
Sbjct: 299 RIGRTGRCGNTGKAISFFDPE 319


>gi|37528482|ref|NP_931827.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39931722|sp|Q7MYL2|RHLB_PHOLL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|36787920|emb|CAE17037.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 428

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 184/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P+VI EAL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PKVI-EALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHYLLTHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +R    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  AEER--QTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQLKILESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPPVNERMN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+S  +  LA      A  + +    +    I       +  ++   +  +L   
Sbjct: 195 LLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSNEEKMRLLQTLLEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+   +G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNIDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/352 (30%), Positives = 179/352 (50%), Gaps = 5/352 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  Y   + +Q   +   +  +D++  A+TGSGKT AF   + + ++ + +      
Sbjct: 196 AIRKAEYTQPSPIQAQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLTHIMDQRELVE-GE 254

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ L +APTRELA Q+  E +      GV    C GG S   + + LQ GA IVV TPG
Sbjct: 255 GPIGLILAPTRELAQQIYLEAKRFGKVYGVGAICCFGGGSKWEQSKALQEGAEIVVATPG 314

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D I+ K  N+  +  +VLDEAD M D+GF   +  I D     R+ LMFSAT    +
Sbjct: 315 RMIDLIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKRKV 374

Query: 194 TTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIV 249
             LA++   D V+V   ++   N   + I      V  + + N + N ++ +    + ++
Sbjct: 375 ERLARDVLTDPVKVVQGDVGEANEDVTQIVLVVPSVPPTTKWNWLTNHLVEFTSVGSVLI 434

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +A+       L      V  L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 435 FVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKDFPILVATDVAARGLD 494

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ +++ + +   HR GRTGRAG KG++  +I    +  A  L R
Sbjct: 495 IPHVRTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKEKEFAGHLVR 546


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P  L +APTREL  
Sbjct: 213 RDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVS 272

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R L  G  ++V TPGRL D +    +++++
Sbjct: 273 QIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLAN 332

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 333 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDY 392

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + I+++L  +     IVF  T+         L
Sbjct: 393 IFLSVGRVGSTSENITQKVLYVEDEEKKSVILDLLNANSEGLTIVFTETKRMADNLADFL 452

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G+A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 453 YDQGFPATAIHGDRSQYEREKALAAFKSGQAPILVATAVAARGLDIPNVSHVINYDLPSD 512

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 513 IDDYVHRIGRTGRAGNVGIATAFFNRNNKNIVKGMLDLLTEANQEV 558


>gi|116872882|ref|YP_849663.1| DEAD-box ATP dependent DNA helicase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|315303187|ref|ZP_07873846.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
 gi|116741760|emb|CAK20884.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|313628444|gb|EFR96918.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
          Length = 435

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  +++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     D+ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score =  176 bits (447), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 182/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ +  +  P 
Sbjct: 282 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQKQLKPG 340

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 400

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFSAT    
Sbjct: 401 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 460

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  +V+++++    + ++
Sbjct: 461 IERLARDVLTDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLVHLVKFLSEGSVLI 519

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 520 FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 579

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P ++ V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 580 IPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 631


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 192/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 212 LPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILP-AIVHINNQ 270

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 271 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 329

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +   G N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 330 EIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 389

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     ++  + ++L   Y 
Sbjct: 390 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYD 449

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 450 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 509

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 510 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 569

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 570 VDVLREANQEI 580


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 201/373 (53%), Gaps = 7/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+S   + N T +Q A + P L  +D++  A+TGSGKT AF L +   LL  
Sbjct: 348 NLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLERLLYR 407

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +PAS  L L+  PTRELAVQ     E L   T + +++  GG S  R++ +L+   
Sbjct: 408 Q-KTNPASRVLVLS--PTRELAVQCHAMGEKLAKFTDIRMSLICGGFSTKRQQAELRAHP 464

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            ++V TPGRL DH++   G ++  ++ +++DEAD +L++GF+++++ I+      R+ ++
Sbjct: 465 DVIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFKEEVDEIIRQCSVSRQTML 524

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT++  +  L        +RV I       +++    V V      +++  ++ + + 
Sbjct: 525 FSATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVLAVCKR 584

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  ++    R   +      +   L G+L+Q +R  +L+  ++GR    +AT
Sbjct: 585 SFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLLAT 644

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E V++A++ +     +HR GRT RAGR G S+ ++ +  ++  + + +
Sbjct: 645 DLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEIVK 704

Query: 362 EANVSVVWEPAPS 374
            A V +     PS
Sbjct: 705 HATVPLSSRSIPS 717


>gi|315282345|ref|ZP_07870774.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
 gi|313614006|gb|EFR87721.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
          Length = 435

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKIDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLVERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|224136846|ref|XP_002322430.1| predicted protein [Populus trichocarpa]
 gi|222869426|gb|EEF06557.1| predicted protein [Populus trichocarpa]
          Length = 657

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/384 (33%), Positives = 196/384 (51%), Gaps = 19/384 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---L 63
           I + + E L +RG   L  +Q       L   D++  A+TG GKT+AF L +  +L   L
Sbjct: 86  ISEPLREVLKKRGIEALFPIQARTFEDILNGGDLVGRARTGQGKTLAFVLPILESLVNGL 145

Query: 64  AENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           A+  R +     P  L + PTRELA QV  + +      G+      GG S   +   L+
Sbjct: 146 AKASRKTGYGRPPSVLVLLPTRELATQVFDDFKVYGGAMGLDSCCVYGGASYQPQEFALK 205

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKR 180
            G  +VVGTPGR+ DHI    +++S LK  VLDEADEML +GF +D+E IL       K 
Sbjct: 206 RGVDVVVGTPGRIKDHIEKGNIDLSLLKFRVLDEADEMLRMGFVEDVELILGKVKDVNKV 265

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDR--DNAIVN 237
           + L+FSAT+   +  ++  + K   + +++    +  +  + R +++  S       I +
Sbjct: 266 QTLLFSATLPGWVKQISSKFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTSAIPQVIPD 325

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I+R Y      I+F   R S +  + +L        AL GE+ Q +R   L   R G+  
Sbjct: 326 IIRCYASGGRTIIFTEKRESANELSGLLP----GARALHGEIQQSQREVTLSGFRSGKFL 381

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +AT+VAARG+D+ D++L+I  E  ++ E  +HRSGRTGRAG  G++V +      RR+
Sbjct: 382 TLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLYD---PRRS 438

Query: 357 E--RLFREANVSVVWEPAPSVEAI 378
              ++ RE+ V      AP  E I
Sbjct: 439 NISKIQRESGVKFEHITAPKAEDI 462


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 192/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 303 LPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILP-AIVHINNQ 361

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 362 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 420

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +   G N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 421 EIVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 480

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     ++  + ++L   Y 
Sbjct: 481 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYD 540

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 541 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 600

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 601 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 660

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 661 VDVLREANQEI 671


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 128/366 (34%), Positives = 190/366 (51%), Gaps = 28/366 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------- 54
           FE+   P+ +  AL ++GY + T +Q       ++ KDV+  A+TGSGKT  F       
Sbjct: 158 FEDAPFPRKLVAALLKQGYESPTPIQAQAWPIAVKGKDVIAIAKTGSGKTCGFLLPALAK 217

Query: 55  ----GLALASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
               G   A  +   + RF PA+  P A+ +APTRELA+Q+G E        G  V    
Sbjct: 218 IVKQGATAAPDMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFCPAAGAKVVTLY 277

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIR---GKGLNISHLKA--VVLDEADEMLDLG 164
           GG S   + R L++GA ++V TPGRL D +    G    +S   A  VVLDEAD MLD+G
Sbjct: 278 GGASKGDQLRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRMLDMG 337

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQ---HSDID 220
           F   I+ I+   P  R+ LMF+AT    +  +A  + Q DA  V I     +   +  I 
Sbjct: 338 FEPQIKKIIKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANKSIT 397

Query: 221 YRAVLVALSDRDNAIVNILRYH---GAKNAIVFCSTRASVSRFT-KVLAEHLFQVVALSG 276
               +V    + +  + +L+ +   GA+  IVFC T+        K+ A  L    A+ G
Sbjct: 398 QTIEIVTEDQKLDRAIAVLKENLVDGARG-IVFCGTKRRCDFIDRKMKAMGLRSAGAIHG 456

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           +  Q ER  +L + R G+A + +ATDVAARG+D+P + +V+  +     E+ +HR GRTG
Sbjct: 457 DKDQAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPLQVEDYVHRIGRTG 516

Query: 337 RAGRKG 342
           RAG++G
Sbjct: 517 RAGKEG 522


>gi|19387219|gb|AAL87140.1|AF479821_1 DEAD box RNA helicase Vasa [Hyphessobrycon ecuadoriensis]
          Length = 397

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 171/314 (54%), Gaps = 10/314 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+ +     +FS    P A+ +APTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQQLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GG++     R++  G +++ GTPGR+ D I RGK + +S L+ +VLDE
Sbjct: 61  AYGTCVRPVVVYGGINTGYTIREVLKGCNVLCGTPGRMLDIIGRGK-VGLSKLRYLVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS 211
           AD MLD+GF  D+  ++ S    + ++R+ LMFSAT    I  LA ++ K D + + +  
Sbjct: 120 ADRMLDMGFEQDMRKLVSSPGMPAKEERQTLMFSATYPEXIQRLAADFLKXDYLFLAVGX 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                SD++ + + V    +   ++ +L+  G +  +VF  T+ S       L +     
Sbjct: 180 VGGACSDVEQQIIQVDQYSKREQLLELLKTTGTERTMVFVETKRSADFIATFLCQEKVPT 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R G+  V +AT VAARG+D+  ++ V++ +L +N E  +HR
Sbjct: 240 TSIHGDREQREREKALSDFRTGQCPVLVATSVAARGLDIEHVQHVVNFDLPNNIEEYVHR 299

Query: 332 SGRTGRAGRKGMSV 345
            GRTGR G  G +V
Sbjct: 300 IGRTGRCGNTGRAV 313


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 182/351 (51%), Gaps = 12/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I E +++  Y   T VQ+  +      +D++  AQTGSGKT AF L + + +   
Sbjct: 237 NLPETIRENVNKARYTKPTPVQKYSIPIINAGRDLMACAQTGSGKTAAFLLPVLAGIFRS 296

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               D FS    P A+ + PTREL  Q+  E       + V   V  GG SV  + RDL 
Sbjct: 297 GLKADSFSEKQTPQAIVVGPTRELVSQIFTEARKFARNSVVQPVVAYGGTSVQSQLRDLS 356

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK 179
            G +I++ TPGRL D I RGK +    ++ ++LDEAD MLD+GF  +I  +L S   P K
Sbjct: 357 RGCNILIATPGRLLDFINRGK-VGCDCVEYLILDEADRMLDMGFEPEIRKLLGSPGMPDK 415

Query: 180 --RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             R  LMFSAT    I  LA  + ++D + + +       SD+    + V  +D+   ++
Sbjct: 416 NSRHTLMFSATFPDEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQVENADKREKLM 475

Query: 237 NIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +L      A   +VF  T+ +       L++      ++ G+  Q+ER  AL   + G+
Sbjct: 476 ELLVDVPETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGK 535

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G + 
Sbjct: 536 CPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGSAT 586


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   D   P 
Sbjct: 26  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---DLSGPR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  ++++     T +   +  GG     +   L+    +++GTP
Sbjct: 83  VEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPDVLIGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FSAT    
Sbjct: 143 GRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGA 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIV 249
           A+  +     KD   + + S + Q ++   + ++ A  D+    +   +L       AI+
Sbjct: 203 ALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAII 261

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+D
Sbjct: 262 FTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLD 321

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 322 IDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN 363


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 185/348 (53%), Gaps = 10/348 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q       L+ +D++  A+TGSGKT+  G  +   +  +  R +P   P  L
Sbjct: 41  GFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTL--GYLIPGFIHLKRIRNNPQMGPTVL 98

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            ++PTRELA Q+  E    + ++  +   C+ GG     + RDL  GA IVV TPGRL D
Sbjct: 99  VLSPTRELATQIQDEAV-KFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGRLND 157

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++AT    +  +A
Sbjct: 158 ILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIA 217

Query: 198 KNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCST 253
            +   + V+VNI +  E   +  I     ++   ++   +  ILR    G+K  I+FCST
Sbjct: 218 ADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSK-IIIFCST 276

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  + L    F   A+ G+ SQ ER   L   R GR+ V +ATDVAARG+D+ D+
Sbjct: 277 KKMCDQLARNLTR-PFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDI 335

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +VI+ +  +  E+ +HR GRTGRAG  G++     +   + A  L +
Sbjct: 336 RVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVK 383


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 183/352 (51%), Gaps = 9/352 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+ +   
Sbjct: 212 ETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPILQQLMNDGVA 271

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  + +APTREL  Q+  E       T V   V  GG S     R++  G 
Sbjct: 272 TSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGFTIREVLKGC 331

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RR 181
           +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF   +  +++S    PK+ R+
Sbjct: 332 NVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSPGMPPKEERQ 391

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            LMFSAT    I  LA ++ K D + + +       SDI+   + V    +   ++ +L+
Sbjct: 392 TLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYSKREQLLELLK 451

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +A
Sbjct: 452 ATGTERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVA 511

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           T VAARG+D+  ++ VI+ +L    +  +HR GRTGR G  G +V F  P++
Sbjct: 512 TSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFDPES 563


>gi|117619321|ref|YP_856922.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 461

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 164/317 (51%), Gaps = 2/317 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT  F L +   LLA + R     
Sbjct: 15  AVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQRLLANHGRGRRQV 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +            +  GGVS+      ++ G  I+V TPG
Sbjct: 75  R--ALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLDAIKLGIDILVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    L +S L+ +VLDEAD MLD+GF  DI  I+ + P +R+ L+FSAT S  I
Sbjct: 133 RLLDLLTQGALTLSELEVLVLDEADRMLDMGFIVDIRRIMKALPAERQTLLFSATFSSEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +  K+   + +   N     +  R + V    R   + +++     +  +VF  T
Sbjct: 193 KALADDLLKEPTLIEVDPSNTAAEQVTQRIIQVDRERRRELLSHMIGRGNWQRVLVFVRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + + +     VA+ G+ SQ  R+ AL   R+G+ RV +ATD+AARG+D+  L
Sbjct: 253 KQIADRLAQQMQKDGLDTVAIHGDKSQGARNRALADFREGKVRVLVATDIAARGLDIDQL 312

Query: 314 ELVIHAELSSNPENLLH 330
             VI+ EL    E+ +H
Sbjct: 313 PHVINFELPQMAEDYIH 329


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 183/342 (53%), Gaps = 6/342 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF LA     L  + 
Sbjct: 5   PEVLA-GLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAF-LAATFNYLLTHP 62

Query: 68  RFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              P   + P A+ +APTRELAVQ+  + + + A TG+ + +  GG    ++   L+ G 
Sbjct: 63  LTKPRLVNQPRAIIMAPTRELAVQIYNDADSIAASTGLKLGLAYGGEGYDKQLAVLEQGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+    P   +R  +
Sbjct: 123 DILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E      I       +  D+   +++++    
Sbjct: 183 LFSATLSLRVQELAYEHMNHPEHVQVEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEW 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 243 PEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALDILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 303 AARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSI 344


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 183/352 (51%), Gaps = 9/352 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+ +   
Sbjct: 233 ETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPILQQLMNDGVA 292

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  + +APTREL  Q+  E       T V   V  GG S     R++  G 
Sbjct: 293 TSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTGFTIREVLKGC 352

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKK-RR 181
           +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF   +  +++S    PK+ R+
Sbjct: 353 NVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNSPGMPPKEERQ 412

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            LMFSAT    I  LA ++ K D + + +       SDI+   + V    +   ++ +L+
Sbjct: 413 TLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYSKREQLLELLK 472

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +A
Sbjct: 473 ATGTERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDFRTGQCPVLVA 532

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           T VAARG+D+  ++ VI+ +L    +  +HR GRTGR G  G +V F  P++
Sbjct: 533 TSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFDPES 584


>gi|332254329|ref|XP_003276279.1| PREDICTED: ATP-dependent RNA helicase DDX55 [Nomascus leucogenys]
          Length = 599

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|170760702|ref|YP_001787100.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 421

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNIDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+  V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDVTHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 186/371 (50%), Gaps = 17/371 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + +A+   GY + T +Q       L+  D++  A+TGSGKTV +   L   ++    
Sbjct: 133 PRELMDAVDRAGYKSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGY---LFPGIMHIRG 189

Query: 68  RFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           R  P+      P    +APTRELA Q+  E        G+      GG     + R+L++
Sbjct: 190 RQGPSFPRPVGPTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQLRELRH 249

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I + TPGRL D +    +N+     VVLDEAD MLD+GF   I  IL  +P +R+ L
Sbjct: 250 GPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAPAQRQTL 309

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRY 241
            F+AT   A+  +A     + ++VNI   +   ++ D   V+       +   ++ +LR 
Sbjct: 310 FFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRLMEVLRN 369

Query: 242 HGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              +   AIVFC T+    +  + +         + G+  Q+ER   L   R GR  V +
Sbjct: 370 PPTQPLKAIVFCGTKKMCDQIGRSMGG---MGAVIHGDKEQRERDWILNQFRSGRVPVLV 426

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP--QNMQRRA 356
           ATDVAARG+D+ ++ +V++ +  +  E+ +HR GRTGRAG KG +  F+ P   NM R+ 
Sbjct: 427 ATDVAARGLDIKEVNMVVNFDFPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEGNMARKL 486

Query: 357 ERLFREANVSV 367
             + R+A   V
Sbjct: 487 IPILRDAGQDV 497


>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
          Length = 730

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 163/315 (51%), Gaps = 7/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGREL 94
           +D++  AQTGSGKT AF L + + +L++      FS    P  + ++PTREL  Q+  E 
Sbjct: 316 RDLMACAQTGSGKTAAFLLPIINGMLSDGVTGSSFSEFQEPQCIIVSPTRELTSQIYNEA 375

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                 T +   V  GG SV  + R++  G H++V TPGRL D I    + +S  K +VL
Sbjct: 376 YKFARGTMLRPVVIYGGTSVGHQLREVGKGCHLLVATPGRLMDFINRGRIKVSKCKYLVL 435

Query: 155 DEADEMLDLGFRDDIE--FILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
           DEAD MLD+GF  ++E    L   PKK  R+ LMFSAT    +   A  Y +D + + + 
Sbjct: 436 DEADRMLDMGFGPEMEKLIYLPDMPKKGERQCLMFSATFPQEVQQKAAEYLEDYLFLTVG 495

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                  DI    + V   D+   +  +L  +  +  +VF  T+         L +    
Sbjct: 496 RVGGATPDITQTIIEVGKYDKKEKLSEMLMNNPDERTLVFTETKRGADFLATCLCQESLP 555

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             ++ G+  Q+ER  AL   R GRAR+ +AT VAARG+D+  ++ V++ ++ S+ E  +H
Sbjct: 556 ATSIHGDREQREREEALADFRSGRARISVATSVAARGLDISGVKHVVNYDMPSSIEEYVH 615

Query: 331 RSGRTGRAGRKGMSV 345
           R G TGR G  G + 
Sbjct: 616 RIGWTGRVGNLGKAT 630


>gi|333027865|ref|ZP_08455929.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
 gi|332747717|gb|EGJ78158.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
          Length = 554

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 189/367 (51%), Gaps = 12/367 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   
Sbjct: 115 FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLAL--- 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R +   APL L + PTRELA QV   L        + +   +GG+S+ ++   L
Sbjct: 172 LARTAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANAL 231

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L+    + +
Sbjct: 232 RRGAELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQ 291

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L +++  D V  ++       + +++  + VA    D  +   + +
Sbjct: 292 TMLFSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHLLYVA----DATVKRAVTH 347

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           H A      I+F  T+    R  K L        AL G  SQ +R+  L   ++G+    
Sbjct: 348 HIAAREGRLIMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTAL 407

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R  +R
Sbjct: 408 VATNVAARGIHIDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPEQKRDTQR 467

Query: 359 LFREANV 365
           LF  A +
Sbjct: 468 LFSAAGI 474


>gi|170593039|ref|XP_001901272.1| DEAD [Brugia malayi]
 gi|158591339|gb|EDP29952.1| DEAD, putative [Brugia malayi]
          Length = 689

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 202/417 (48%), Gaps = 40/417 (9%)

Query: 5   ENIPQVIG------------EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P  IG            +AL ++  +  T +Q   +   L  +D++  A TGSGKT+
Sbjct: 240 ENVPPPIGSFIEMKFPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTL 299

Query: 53  AFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-------V 103
            F L L    L +     F     P  L I P+RELA Q+   +E L+           +
Sbjct: 300 TFALPLIMFCLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRL 359

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
            V +CIGG+ +  + R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+
Sbjct: 360 RVGLCIGGLPISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDM 419

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF ++I  I      +R+ L+FSAT+   I   A++    AV VN+        ++    
Sbjct: 420 GFEEEIRTIFSFFKGQRQTLLFSATMPRKIQNFARSALVRAVIVNVGRAGAASLNVIQEI 479

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V   ++   I++ L+   A   ++F   ++ V    + L      V +L G   Q++R
Sbjct: 480 EYVRADEKLTRILDCLQ-KTAPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDR 538

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              +   R G   V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GRKGM
Sbjct: 539 HTGVDAFRRGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGM 598

Query: 344 SVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
           +   I            R A++SV+ +    + A+     Q +   PLFL  + G E
Sbjct: 599 ATTFIN-----------RRADISVLQD----LRALLLEAGQEL---PLFLRDMGGPE 637


>gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 467

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+  +  
Sbjct: 12  ILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADMPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            A    AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  -AKRVRALILTPTRELAVQVEDNISK-YAKYLPLTSMAMYGGVDAAPQKQRLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + A++
Sbjct: 189 SKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A+    SQ  R   L   + GR R  +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKD 350


>gi|30020240|ref|NP_831871.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30262130|ref|NP_844507.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527402|ref|YP_018751.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47566879|ref|ZP_00237597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49184972|ref|YP_028224.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481521|ref|YP_036269.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319414|ref|ZP_00392373.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118477548|ref|YP_894699.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870274|ref|ZP_02214930.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167632786|ref|ZP_02391112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638259|ref|ZP_02396536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170686363|ref|ZP_02877584.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170706085|ref|ZP_02896547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177650849|ref|ZP_02933746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567856|ref|ZP_03020767.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036903|ref|ZP_03104288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196046115|ref|ZP_03113343.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206972062|ref|ZP_03233010.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206975047|ref|ZP_03235961.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959604|ref|YP_002338156.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218231862|ref|YP_002366836.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218903259|ref|YP_002451093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|222095747|ref|YP_002529804.1| ATP-dependent RNA helicase (d-e-a-d box family) [Bacillus cereus
           Q1]
 gi|225864093|ref|YP_002749471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227815071|ref|YP_002815080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228914725|ref|ZP_04078334.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927197|ref|ZP_04090260.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933452|ref|ZP_04096305.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945743|ref|ZP_04108090.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956133|ref|ZP_04118019.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228985230|ref|ZP_04145395.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229043887|ref|ZP_04191583.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|229069681|ref|ZP_04202967.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|229079319|ref|ZP_04211863.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|229121683|ref|ZP_04250906.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|229127547|ref|ZP_04256538.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|229138830|ref|ZP_04267411.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|229144746|ref|ZP_04273145.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|229150373|ref|ZP_04278590.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|229178524|ref|ZP_04305889.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|229184351|ref|ZP_04311558.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|229190238|ref|ZP_04317240.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|229196367|ref|ZP_04323115.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|229600206|ref|YP_002866487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684699|ref|ZP_05148559.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254720956|ref|ZP_05182747.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254737143|ref|ZP_05194847.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743671|ref|ZP_05201356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751458|ref|ZP_05203495.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254758331|ref|ZP_05210358.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|296502724|ref|YP_003664424.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|301053653|ref|YP_003791864.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|29895790|gb|AAP09072.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30256756|gb|AAP25993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502550|gb|AAT31226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556508|gb|EAL14841.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49178899|gb|AAT54275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49333077|gb|AAT63723.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416773|gb|ABK85192.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714162|gb|EDR19683.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513560|gb|EDR88929.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167531598|gb|EDR94263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170129087|gb|EDS97952.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170669439|gb|EDT20181.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172083310|gb|EDT68371.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190560911|gb|EDV14885.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990488|gb|EDX54471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196023170|gb|EDX61849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206732985|gb|EDZ50159.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206746468|gb|EDZ57861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065161|gb|ACJ79411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218159819|gb|ACK59811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218535161|gb|ACK87559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|221239805|gb|ACM12515.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           Q1]
 gi|225790511|gb|ACO30728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227006946|gb|ACP16689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228587221|gb|EEK45291.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|228593222|gb|EEK51039.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|228599147|gb|EEK56760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|228604928|gb|EEK62384.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|228633070|gb|EEK89682.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|228638707|gb|EEK95138.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|228644746|gb|EEL00997.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|228655893|gb|EEL11740.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|228661727|gb|EEL17344.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|228703987|gb|EEL56429.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|228713421|gb|EEL65310.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|228725418|gb|EEL76679.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|228774525|gb|EEM22926.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228803570|gb|EEM50303.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228813964|gb|EEM60238.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826181|gb|EEM71961.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832523|gb|EEM78097.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845044|gb|EEM90086.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229264614|gb|ACQ46251.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|296323776|gb|ADH06704.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|300375822|gb|ADK04726.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
 gi|324326167|gb|ADY21427.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 389

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/341 (35%), Positives = 183/341 (53%), Gaps = 10/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSP 71
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L AL   L     +  P
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGP 76

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  L + PTRELA+QV      L   T + +A   GGV+             IVV T
Sbjct: 77  ---PRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
            GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+  
Sbjct: 134 TGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEG 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNA 247
            AI   A+   +D V V+     R+   I    YRA       +   + ++L+   A  +
Sbjct: 194 DAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRAD--NFEHKVALLKHLLKQDDATRS 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   R  V    + L         L GE++Q +R+  ++ + DGR  V +ATDVAARG
Sbjct: 252 IVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 312 IDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 192/363 (52%), Gaps = 13/363 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 246 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 304

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL  G
Sbjct: 305 PPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 364

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 365 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 424

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V +L    
Sbjct: 425 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVRLLNEIA 484

Query: 241 --YHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              + A N    I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++
Sbjct: 485 PTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKS 544

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++
Sbjct: 545 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 604

Query: 355 RAE 357
             E
Sbjct: 605 ARE 607


>gi|308808636|ref|XP_003081628.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116060093|emb|CAL56152.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 592

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 180/354 (50%), Gaps = 31/354 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +P+ I  A+ + GYV  + +Q A +   L ++DV+  A+TGSGKT AF + + + ++   
Sbjct: 164 LPKEILRAIEKVGYVKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQLP 223

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D  + A  P AL +APTRELA Q+  E           VA+ +GG S+  +   L+ 
Sbjct: 224 KMTDEIA-AHGPYALIMAPTRELAQQIEEETLKFAQFLNYRVALVVGGQSIEDQGFKLRK 282

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-------- 175
           G  I+VGTPGR+ D I  +   +S    +VLDEAD M+D+GF   +  +++S        
Sbjct: 283 GVEILVGTPGRIIDVIDRRYTVLSQCNYIVLDEADRMIDMGFEPQVNAVMESMGSGNLKP 342

Query: 176 -------------------SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                              S K R   MFSAT+ P++  LA++Y ++   VNI S  +  
Sbjct: 343 EDEAEALDAQALDAGAGVASSKYRTTYMFSATMPPSVERLARSYLRNPAVVNIGSAGKTS 402

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             I    + VA  +RD+ +  +L  H    AIVF + + SV     +     +   ++ G
Sbjct: 403 DLIKQEVIWVAKHERDSKLELVLSRHTNTQAIVFVNAKRSVDAVQNLCYRLGYSCASIHG 462

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             SQ +R  +L+  + G   + +ATDVA RGID+ +++LV++ EL  + EN  H
Sbjct: 463 GKSQDQREESLRGFKAGEYDILVATDVAGRGIDVKNIDLVVNYELPHSIENYTH 516


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAASQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSI 357


>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
 gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
          Length = 441

 Score =  176 bits (446), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 182/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  PQ++ +AL+++GY   T +Q   +   +  +DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLAPQLL-KALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF    E I   +  +R+ L
Sbjct: 126 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A    KD V+ N     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFASRLLKDPVQFNAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R +V   +++L +   +   L GE++Q +R+ A+  +++    
Sbjct: 241 RFIENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAV 349


>gi|150863785|ref|XP_001382380.2| pre-mRNA splicing factor RNA helicase of DEAD box family
           [Scheffersomyces stipitis CBS 6054]
 gi|158514818|sp|A3LNL1|PRP28_PICST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|149385041|gb|ABN64351.2| pre-mRNA splicing factor RNA helicase of DEAD box family
           [Scheffersomyces stipitis CBS 6054]
          Length = 482

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 189/367 (51%), Gaps = 38/367 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------AENDRFSP 71
           Y+  T +Q A +   L ++DV+  A+TGSGKT+AF + L S +L         E+ +   
Sbjct: 77  YLEPTPIQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQN 136

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            + PL L +APTRELA Q+ +E +    + G+ V   IGG         ++ G H+VV T
Sbjct: 137 YNKPLGLILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVAT 196

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------------- 177
           PGRL D +    + +     +++DEAD M+D+GF   ++ IL   P              
Sbjct: 197 PGRLVDSLERNIIGLDKCYYLIMDEADRMIDMGFEKALQSILSYVPSTDRLNSTIDSMIF 256

Query: 178 --KKRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVAL----- 228
             KKR  LMF+ATISP I  + KN+  +   + +  A E   H   ++  +  A      
Sbjct: 257 HIKKRITLMFTATISPPIEKITKNFLIKPGYLYIGGAGEALDHIVQNFEYLGSATGGSED 316

Query: 229 --SDRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQ 281
             S R + +V I++ H  +    + I+F + +      +  L ++ F+  V + G  +Q+
Sbjct: 317 FDSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFRDNVVIHGSKTQE 376

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R  A+   R   +R+ IATDVAARGID+P++ LV++ ++S   +  +HR GRTGRAG +
Sbjct: 377 LREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQMSRKFDEYVHRIGRTGRAGNR 436

Query: 342 GMSVFVI 348
           G S   I
Sbjct: 437 GESYTFI 443


>gi|42781255|ref|NP_978502.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737177|gb|AAS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 389

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 183/342 (53%), Gaps = 13/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +  E       
Sbjct: 11  QAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPE------V 64

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+    ++VG+P
Sbjct: 65  KQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSP 124

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R+++ FSAT++ A
Sbjct: 125 GRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTKA 184

Query: 193 ITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
               A++   +   VRV  A      S +++  ++    ++++ +  I+ + G   A+ F
Sbjct: 185 AEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM-HMGDVKAVAF 240

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD+AARGID+
Sbjct: 241 LNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDI 300

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 301 DDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 193/369 (52%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 504

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 505 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 564

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  L +      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 565 RAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 624

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 625 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 684

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 685 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 744

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 745 VP-PDLEKL 752


>gi|312215634|emb|CBX95586.1| similar to eukaryotic initiation factor 4A-I [Leptosphaeria
           maculans]
          Length = 396

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +   STL   +   S   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSI---STLQKID---SNVKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMDVQCHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   D + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQIQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAASQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSI 357


>gi|240281151|gb|EER44654.1| ATP-dependent RNA helicase eIF4A [Ajellomyces capsulatus H143]
 gi|325092352|gb|EGC45662.1| RNA helicase [Ajellomyces capsulatus H88]
          Length = 398

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 171/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ QQ+R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 194/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REA+ ++
Sbjct: 458 SVLREASQAI 467


>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 984

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 194/364 (53%), Gaps = 7/364 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +         
Sbjct: 340 LKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLEELDG 398

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P+A+ + PTREL +Q+G++++  + K+  + AVC+ GG  +  +  +L+ GA I+V TPG
Sbjct: 399 PIAIIMTPTRELCMQIGKDIKK-FTKSLNLHAVCVYGGTGISEQIAELKRGAEIIVCTPG 457

Query: 134 RLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +   G  +++L+ V   VLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 458 RMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 517

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIV 249
             +  LA+   +  + V +   +    D++   V++    +    +  +  YH   + IV
Sbjct: 518 RQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELLGLYHEHGSIIV 577

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   + +     K L +  +  ++L G + Q +R + +   + G+ ++ IAT VAARG+D
Sbjct: 578 FVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARGLD 637

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++ +  ++ E+ +HR GRTGRAG KG +   I     R A  + R   ++ V 
Sbjct: 638 VKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRYAGDIIRAFELASVP 697

Query: 370 EPAP 373
            P P
Sbjct: 698 IPDP 701


>gi|297520171|ref|ZP_06938557.1| ATP-dependent RNA helicase SrmB [Escherichia coli OP50]
          Length = 416

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/315 (36%), Positives = 168/315 (53%), Gaps = 8/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DVL SA TG+GKT A+ L     LL    + S    P  L + PTRELA+QV      L
Sbjct: 14  RDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPPRILILTPTRELAMQVADHAREL 71

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T + +A   GGV+            +IVV T GRL  +I+ +  +   ++ ++LDEA
Sbjct: 72  AKHTHLDIATITGGVAYMNHAEVFSENQNIVVATTGRLLQYIKEENFDCRAVETLILDEA 131

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQH 216
           D MLD+GF  DIE I   +  +++ L+FSAT+   AI   A+   +D V V+     R+ 
Sbjct: 132 DRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRER 191

Query: 217 SDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             I    YRA    L  +   +V++L+   A  +IVF   R  V      L E       
Sbjct: 192 KKIHQWYYRAD--DLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCY 249

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+PD+  V + ++  + +  LHR G
Sbjct: 250 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 309

Query: 334 RTGRAGRKGMSVFVI 348
           RT RAGRKG ++ ++
Sbjct: 310 RTARAGRKGTAISLV 324


>gi|290508239|ref|ZP_06547610.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
 gi|289777633|gb|EFD85630.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
          Length = 443

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/336 (35%), Positives = 180/336 (53%), Gaps = 8/336 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P 
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPPR 78

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL 
Sbjct: 79  ILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195
            +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI  
Sbjct: 139 QYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKD 198

Query: 196 LAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            A+   ++ V V+     R+   I    YRA    +  +   ++++L+   A  +IVF  
Sbjct: 199 FAERLLEEPVEVSATPSTRERKKIHQWYYRAD--DIEHKTALLIHLLKQPEATRSIVFVR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD
Sbjct: 257 KRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPD 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V + ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 317 VSHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLV 352


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/367 (32%), Positives = 184/367 (50%), Gaps = 22/367 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + L   G+   T +Q       L  ++++  A TGSGKT++F L  A   +  
Sbjct: 67  SFPAYVMDVLMREGFSTPTPIQAQGWPMALAGRNMVGVADTGSGKTLSFILP-AIVHINN 125

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                P   P+AL +APTRELA Q+  E+   Y  +  +   C+ GG     +  DL+ G
Sbjct: 126 QPLLRPGDGPIALVLAPTRELAQQIA-EVAHKYGSSSRIKTTCVFGGAPKRGQAMDLERG 184

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGRL D +  +  N+     +VLDEAD MLD+GF   +  I+      R+ LM
Sbjct: 185 VELLIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLM 244

Query: 185 FSATISPAITTLAKNY-QKDAVRVNIA----SEN---RQH----SDIDYRAVLVALSDRD 232
           +SAT    +  LA  +  +D +RV I     S N   +QH     D D +  L  L D  
Sbjct: 245 WSATWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELFRLLD-- 302

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                I+R    K  I+F  T+ +V   T+ L    F  + + G+  Q+ER   L   RD
Sbjct: 303 ----EIMRQKENKT-IIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRD 357

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR  + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R G +G +        
Sbjct: 358 GRHPILIATDVASRGLDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFSSKN 417

Query: 353 QRRAERL 359
            R+A+ L
Sbjct: 418 ARQAKDL 424


>gi|52545831|emb|CAH56233.1| hypothetical protein [Homo sapiens]
          Length = 532

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|196003500|ref|XP_002111617.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
 gi|190585516|gb|EDV25584.1| hypothetical protein TRIADDRAFT_55837 [Trichoplax adhaerens]
          Length = 651

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 182/349 (52%), Gaps = 20/349 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+     +Q   L   L  +DVL  A TGSGKT+AF L +   L     +      
Sbjct: 108 LHQLGFNRPFQIQAVSLPYTLNGRDVLGKALTGSGKTLAFALPIIQKL----SQGEKTGN 163

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ IAPTREL  QV   +  L +    V     GG +   +   L+ GA ++  TPGR
Sbjct: 164 PRAIVIAPTRELCSQVHGCIADLSSTIKSVA--LYGGTAYGPQTSKLRRGADVICATPGR 221

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH++     +  ++ ++LDEADEML   FRD        SP+ +++LMF AT+   I 
Sbjct: 222 LNDHLKRNNFVLDDVQLLILDEADEMLTPNFRD--------SPQNKQVLMFGATMPRYIK 273

Query: 195 TLAKNYQKDAVRVNIASENRQHSD-IDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +AK Y K    ++I  +       + ++AV L+  S R  A+ NI+   G + ++VF +
Sbjct: 274 EIAKKYLKTPEVIDITKKGSPFPKTVTHKAVKLLNWSCRSLAVRNIIEEEGIQRSVVFVT 333

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + +      V  L  +LSQ +R   ++  R G+ +  +ATDVAARG+D+P+
Sbjct: 334 TKVEANDLAQKINGFGLPVKPLHSDLSQNKREEIIEAFRVGKLKAIVATDVAARGLDIPE 393

Query: 313 LELVIHAELSSNPENL-LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
            +LVI      N  +  +HR+GRTGRAGR G++V +   +   R +RLF
Sbjct: 394 TDLVIQVAPPPNGFDFYVHRTGRTGRAGRSGVAVLIYGSD---RKDRLF 439


>gi|170757010|ref|YP_001781328.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 421

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPILEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+  V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDITHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|67458656|ref|YP_246280.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
 gi|67004189|gb|AAY61115.1| ATP-dependent RNA helicase RhlE [Rickettsia felis URRWXCal2]
          Length = 353

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 159/279 (56%), Gaps = 2/279 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA Q+   L  +     +  AV IGG  + ++   L+    +++GTPGR+ 
Sbjct: 11  ALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQLKKNPKVIIGTPGRII 70

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR++LMFSAT+   I  +
Sbjct: 71  DHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFSATMPKHIIAV 130

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           ++ Y  + +R+ + + N+  ++I   ++ V+  ++ + +   L      + I+F  T+ S
Sbjct: 131 SQKYLNNPIRITVGATNKAAAEIKQESMHVSDKEKFSELTKQLGNREG-SVIIFVKTKRS 189

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +  K+L     +  A+ G+LSQ++R   +   R    R+ +ATDVAARG+D+P  + V
Sbjct: 190 ADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHV 249

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           I+ +L   PE+ LHR GRTGRAG  G ++ F+ P ++ R
Sbjct: 250 INYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIR 288


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 179/351 (50%), Gaps = 9/351 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+        D+      V    +   ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLE 426

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++F   +A V    + L     + VA+ G    +ER+ A++  R+G+  V
Sbjct: 427 CLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDHEERTKAIEAFREGKKDV 485

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 486 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 536


>gi|261491682|ref|ZP_05988263.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494445|ref|ZP_05990931.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309829|gb|EEY11046.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312635|gb|EEY13757.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 411

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 180/334 (53%), Gaps = 3/334 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+ +G+   T +Q       L   D+   AQTG+GKT+AF +A  + LL  N+  +  +
Sbjct: 22  ALNSKGFEFCTPIQAKTFPITLNGNDIAGQAQTGTGKTLAFLIATFNHLL-NNEIETAKN 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELAVQ+G + +       + +A+  GG    ++ + ++ G  I+VGT G
Sbjct: 81  QPRALILAPTRELAVQIGADAQLFLPHCDLKLALAYGGDGYDKQIQAIEKGVDILVGTTG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISP 191
           R+ D+++   +++  ++ +VLDEAD M DLGF  DI +++  +P   +R  L+FSAT+S 
Sbjct: 141 RVIDYVKQGIIHLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPVPTERLTLLFSATLSA 200

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LA     +A  + I    R    I       +  D+   ++ +L        ++F 
Sbjct: 201 KVRELAYEDMDNAEYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWPDRCMIFA 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+       + LA    ++  L+G++ Q++R + L     G   + + TDVAARG+ +P
Sbjct: 261 NTKHKCEEIWQYLAADGHRIGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIP 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 321 DVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSI 354


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSP 71
           L+E  Y   T +Q   +      +D++  A TGSGKT  F L +   L   ++   + S 
Sbjct: 23  LAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++   ++    +      GGVSV+ +   L+ G  I+V
Sbjct: 83  GNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGVDILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PKK++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +TTL +    + + + + S +   S +  R   V   ++   + ++++    + A++
Sbjct: 203 PEQVTTLTQELLNNPIEIQLQSADA--STLVQRVFTVNKGEKTAVLAHLIQQEQWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +       + LA+         G+  Q ERS  L   + G   V IATD+AARG+D
Sbjct: 261 FVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+  L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLI 359


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 186/347 (53%), Gaps = 11/347 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 276 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 335

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 336 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 395

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  ++  ++ S    S +KR+ LMFS
Sbjct: 396 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEKRQTLMFS 454

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    + + ++ +LR  G +
Sbjct: 455 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRATGNE 514

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G   V +AT VAA
Sbjct: 515 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAA 574

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V F  P++
Sbjct: 575 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPES 621


>gi|318056293|ref|ZP_07975016.1| putative DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
          Length = 449

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 189/367 (51%), Gaps = 12/367 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL   
Sbjct: 10  FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLAL--- 66

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R +   APL L + PTRELA QV   L        + +   +GG+S+ ++   L
Sbjct: 67  LARTAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANAL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L+    + +
Sbjct: 127 RRGAELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L +++  D V  ++       + +++  + VA    D  +   + +
Sbjct: 187 TMLFSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHLLYVA----DATVKRAVTH 242

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           H A      I+F  T+    R  K L        AL G  SQ +R+  L   ++G+    
Sbjct: 243 HIAAREGRLIMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTAL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R  +R
Sbjct: 303 VATNVAARGIHVDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPEQKRDTQR 362

Query: 359 LFREANV 365
           LF  A +
Sbjct: 363 LFSAAGI 369


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 186/357 (52%), Gaps = 18/357 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L    +V  + +Q   + P L  +DV+  AQTGSGKT A+ L   + +  +     P 
Sbjct: 14  DGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFLNKVARQE---LPK 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVV 129
               A+ +APTRELA Q+ +E+E       V      GG   ++  ++RR +  GA IV+
Sbjct: 71  EHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQQRRGMALGADIVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL   +R    ++SH++  VLDEAD MLD+GF +DI  I  + P+  + +MFSAT+
Sbjct: 131 ATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKALPEDCQHVMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK---- 245
              I  L+++   D V V +A      S +    +       D   + I+R   A     
Sbjct: 191 PKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICY-----DAQKLPIIRSLFANPESE 245

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+A+V    + L      V  +  +LSQ+ R   L+  R GR +V +ATD+
Sbjct: 246 VSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVLVATDI 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
            ARGID+ D+ +VI+ E+  + E+ +HR GRT R A  KG+++ ++  + Q+   RL
Sbjct: 306 VARGIDIDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITLVSPSDQQDFARL 362


>gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 491

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 182/340 (53%), Gaps = 4/340 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+  +  P 
Sbjct: 14  KAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRF-ADAPKIRPK 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
               A+ + PTRELA+QV   +   YAK   + A+ + GGV    +++ L  G  ++V T
Sbjct: 73  RV-RAIILTPTRELALQVEENINQ-YAKYLPLTAMAMYGGVDAAPQKKRLIEGVDLLVAT 130

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FSAT+S 
Sbjct: 131 PGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFSATLSK 190

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++      A++F 
Sbjct: 191 QVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQEQNWSQALIFI 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L +      A     SQ  R   L   + G+    +AT VA+RGID+ 
Sbjct: 251 QTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASRGIDID 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            L  VI+ +L    ++ +HR GRTGRAG +G ++  + ++
Sbjct: 311 ALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKD 350


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
           SA   + ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  SAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYETQKMGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V +    L         +  +L Q++R++ +   + G+  V +ATD+ ARGI
Sbjct: 250 IFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFV 349


>gi|156048134|ref|XP_001590034.1| hypothetical protein SS1G_08798 [Sclerotinia sclerotiorum 1980]
 gi|154693195|gb|EDN92933.1| hypothetical protein SS1G_08798 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 670

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 120/351 (34%), Positives = 187/351 (53%), Gaps = 26/351 (7%)

Query: 20  YVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           + ++  VQ A L P L E+ D L  A+TG+GKT+AF +    TL+ +  R  P      L
Sbjct: 98  FDHMMPVQAATLRPLLSERVDCLAQAKTGTGKTIAFLIPAIQTLINKQRR--PQDGISLL 155

Query: 79  AIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA Q+ +E   L        V   IGG +   E +++ NG +I++ TPGRL D
Sbjct: 156 VMTPTRELAQQIAKEASQLLKNLPNYKVGFAIGGTNKTTEEKNILNGCNILIATPGRLFD 215

Query: 138 HIRGKGLN--ISHLKAVVLDEADEMLDLGF----RDDIEFILDSSPKKRRMLMFSATISP 191
           H+  +G+     +L  +VLDEAD +LD+GF    RD I+ + D    KR+ ++FSATI+P
Sbjct: 216 HLSDEGITNAFRNLDTIVLDEADRLLDMGFMNAIRDIIKCLPDKQKTKRQGMLFSATIAP 275

Query: 192 AIT-----TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYH--- 242
            +       L+K+Y+   +      E   H+ +    + V   SD  +A+V  +R     
Sbjct: 276 HVEKVAHLVLSKDYK--FISTIPEGEVNTHARVPQHLITVPNFSDVASAMVGSIRAEMKL 333

Query: 243 ---GAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARV 297
               +  AIVF  T A V  + ++L++   L  V AL   +SQ +R+   +  R  +  +
Sbjct: 334 EGKDSFKAIVFAPTAALVDFYAQILSQFKDLPPVTALHSRVSQGKRTVVTEEYRVAKNGI 393

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDV ARG+D P +  V    L ++ E+ +HR GRT RAG++G  VF++
Sbjct: 394 LVATDVIARGMDFPSVTNVFQVGLPADKESYIHRLGRTARAGKEGRGVFIL 444


>gi|114046504|ref|YP_737054.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887946|gb|ABI41997.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 451

 Score =  176 bits (446), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 184/339 (54%), Gaps = 15/339 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----------AENDRFSPA 72
           T VQ+  +   L  +DVL  +QTGSGKT+AFGL L   +            AE+   S A
Sbjct: 40  TRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLLQAIHQQLQQQVVLAGAESVSAS-A 98

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           S  LAL + PTRELA QV   L  L +K  + + + +  GG++   +  +L     +VV 
Sbjct: 99  SNALALVLVPTRELAQQVTIALHALASKLSSSLNIQLLCGGIAQEDQLAELAAKPQLVVA 158

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++  +K +VLDEAD +L++GF  D++ ++   PK+++ L+FSAT+ 
Sbjct: 159 TPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWPDVQKLMAMMPKRKQTLLFSATLP 218

Query: 191 PAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            A+ TLA K    + +RV  ++ N   +DI+ R  LV    +  A++ +L+ +     +V
Sbjct: 219 EALGTLAGKLLTNNPLRVEASTRNAVAADIEERLYLVNKGSKAQALIALLKQYQWPQVLV 278

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S R       K L +      AL GE  Q  RS  L   +  R +V +ATD+ ARGI 
Sbjct: 279 FISARDDADAIAKRLVKAGINAAALHGEKEQTVRSQTLADFKANRIQVVVATDLMARGIH 338

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 339 VDALPVVINLDLPMSAPVYVHRIGRTARAGAKGLAISLV 377


>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
          Length = 1007

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 194/364 (53%), Gaps = 7/364 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +         
Sbjct: 363 LKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLEELDG 421

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P+A+ + PTREL +Q+G++++  + K+  + AVC+ GG  +  +  +L+ GA I+V TPG
Sbjct: 422 PIAIIMTPTRELCMQIGKDIK-KFTKSLNLHAVCVYGGTGISEQIAELKRGAEIIVCTPG 480

Query: 134 RLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +   G  +++L+ V   VLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 481 RMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFP 540

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKNAIV 249
             +  LA+   +  + V +   +    D++   V++    +    +  +  YH   + IV
Sbjct: 541 RQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELLGLYHEHGSIIV 600

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   + +     K L +  +  ++L G + Q +R + +   + G+ ++ IAT VAARG+D
Sbjct: 601 FVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARGLD 660

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++ +  ++ E+ +HR GRTGRAG KG +   I     R A  + R   ++ V 
Sbjct: 661 VKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRYAGDIIRAFELASVP 720

Query: 370 EPAP 373
            P P
Sbjct: 721 IPDP 724


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 184/350 (52%), Gaps = 17/350 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTL 62
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L AL   L
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                +  P   P  L + PTRELA+QV  + E L   T + +A   GGV+         
Sbjct: 68  DYPRRKLGP---PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFN 124

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ 
Sbjct: 125 TNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQT 184

Query: 183 LMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNI 238
           L+FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  +
Sbjct: 185 LLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLL 239

Query: 239 LRY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            R+         IVF   R      +++L +   +   L GE++Q +R+NA+  ++ G  
Sbjct: 240 ARFIETEEVTRGIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIV 299

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 300 TVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|126303302|ref|XP_001379053.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Monodelphis domestica]
          Length = 796

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 196/372 (52%), Gaps = 19/372 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 229 NLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 286

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L+ 
Sbjct: 287 ---YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALRA 343

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 344 GPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQT 403

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 404 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 459

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 460 SALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 519

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 520 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 579

Query: 356 AERLFREANVSV 367
            + + + A   V
Sbjct: 580 LKEIVKSAKAPV 591


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 196/376 (52%), Gaps = 21/376 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ +    S ++      
Sbjct: 193 YERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNNMIKQGPGDSISATINNNR 252

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL +APTRELA Q+  +      ++ +   V  GG  +  +  +L  G +++V 
Sbjct: 253 RKQFPVALILAPTRELASQIFDDARKFSYRSLIRPCVLYGGADMRTQLMELSEGCNLLVA 312

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFS 186
           TPGRL D +    + + + + +VLDEAD MLD+GF   I  I+  D+ P   +R+ LMFS
Sbjct: 313 TPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQDALPPSGERQTLMFS 372

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LAK++  + + + +        +I    + V  + + + ++++L +  A  
Sbjct: 373 ATFPNEIQILAKDFLNNYIFLTVGRVGSTSENITQTILWVEENAKRDTLIDLLAHSEAGT 432

Query: 247 AI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            I VF  TR         L    FQV ++ G+ +Q++R  AL   R GR  V +AT VAA
Sbjct: 433 LILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVATAVAA 492

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++        +N+ R    L  E
Sbjct: 493 RGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNRNLARGLVELLEE 552

Query: 363 ANVSVVWEPAPSVEAI 378
           AN ++     P ++AI
Sbjct: 553 ANQAI----PPWLKAI 564


>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 453

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 198/367 (53%), Gaps = 14/367 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPA 72
           +L+E GY + T +Q   +   L+ K+++ +AQTGSGKT  F L +   L   E  R    
Sbjct: 20  SLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPMLEMLARGETQRKKRV 79

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
            A   L + PTRELAVQV   +E  Y K   + A+ + GGV    +++ L  G  IVV T
Sbjct: 80  RA---LILTPTRELAVQVCNSIE-AYGKYLNLKALAVYGGVDYEPQKQALIEGIDIVVAT 135

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P  R+ L+FSAT+S 
Sbjct: 136 PGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPVDRQNLLFSATLSR 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  LAK    +A+++++  ++    +ID   V V    +   + ++++ +  + A++F 
Sbjct: 196 QVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKDKKSALLSHLIKENRWQQALIFI 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   ++    L +   Q   +    +Q  R   L   + G+ +  I+T ++ARGID+ 
Sbjct: 256 ETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQFLISTGISARGIDID 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQRRAERLFREAN 364
           +L LVI+ +L    +  +HR GRT RAG  G ++ ++ ++       +++R + L  E  
Sbjct: 316 ELPLVINYDLPYPADEYVHRIGRTARAGAAGEAISLVSKDDFKNLCMIEKRLDHLI-ERK 374

Query: 365 VSVVWEP 371
           V   +EP
Sbjct: 375 VVAGFEP 381


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 188/354 (53%), Gaps = 10/354 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+  AL++      T VQ   +   L   D++  AQTGSGKT+AF L+L +TL  +
Sbjct: 39  NLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLTTLQKK 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +          L + P+RE+A Q+ +    L A+  V V + IGG +  ++   L+   
Sbjct: 99  PEA-------RGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKNP 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGR+ DH+ G  L + +++ +VLDEAD MLD+GF   +  I  +    R+ +MF
Sbjct: 152 RLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMMF 211

Query: 186 SATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SA+    + ++A+ + K D V V           +  + + +  S +++ +++ L     
Sbjct: 212 SASFGSNVESIAQLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDELNATRG 271

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF   + +       L E+ F    + G LSQ +R+  ++  R+G  R+ +ATD+ 
Sbjct: 272 -GVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVATDLL 330

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           ARG+D+P ++ V++ +L    E+ LHR GRT RAGR G ++ FV P + +  A+
Sbjct: 331 ARGLDVPHVDHVVNFDLPFQSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAK 384


>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+  V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDITHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 195/376 (51%), Gaps = 16/376 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
           +SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    
Sbjct: 276 WSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIM 335

Query: 244 AK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IA
Sbjct: 336 AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIA 395

Query: 301 TDVAARGIDL------PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           TDVA+RG+         D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N++
Sbjct: 396 TDVASRGLGFCIYVYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 455

Query: 354 RRAE--RLFREANVSV 367
           +  E  ++  EAN ++
Sbjct: 456 QARELIKVLEEANQAI 471


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 188/347 (54%), Gaps = 8/347 (2%)

Query: 4   FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P   QV+ +ALS   + + T +Q   L P L   D+   AQTG+GKT+AF +A   
Sbjct: 11  FADLPINEQVV-KALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFH 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL+          P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R  
Sbjct: 70  YLLSNPQ--PTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREK 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
           L+ G  I++GT GR+ D+ +    +++ ++  VLDEAD M DLGF  DI ++ +  PK  
Sbjct: 128 LEEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPT 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA  +  +   V +  E +  + I       +  D+   ++++
Sbjct: 188 ERLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSL 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF +T+ S  +    L     +V  LSG++ Q +R   L+    G+  + 
Sbjct: 248 MEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 308 VATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSI 354


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 187/352 (53%), Gaps = 11/352 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           + +   +S  GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+++   
Sbjct: 255 ETLNRNVSRAGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMSDGAA 314

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  + +APTREL  Q+  E       T V   V  GG+S     +++  G 
Sbjct: 315 ASKFSEVQEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTGYTIQEVLKGC 374

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PK-KR 180
           +++ GTPGRL D I RGK + +S ++ +VLDEAD MLD+GF  D+  ++ S    PK +R
Sbjct: 375 NVLCGTPGRLLDIIGRGK-VGLSKVRYLVLDEADRMLDMGFETDMRKLVSSPGMPPKEQR 433

Query: 181 RMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + LMFSAT    I  LA ++ K+  + + +       SDI+   + V    +   ++ +L
Sbjct: 434 QTLMFSATYPEDIQRLAADFLKENYLFLVVGVVGGACSDIEQLIIQVTRYSKREQLLEML 493

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +
Sbjct: 494 KTTGDERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGKCPVLV 553

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           AT VAARG+D+  ++ V++ +L  + E  +HR GRTGR G  G +V F  P+
Sbjct: 554 ATSVAARGLDIEHVQHVVNFDLPKSIEEYVHRIGRTGRCGNTGRAVSFFDPE 605


>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
 gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
          Length = 407

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 182/361 (50%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+QV  +   L  KT + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +     +   +   ++  S  R+   I         ++   A++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 183/348 (52%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   ++  GYV LT VQ+  +   +  +D++  AQTGSGKT AF L + S ++ E
Sbjct: 280 NLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNE 339

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                ++     P A+ IAPTREL  Q+  +       T V   V  GG+      RD++
Sbjct: 340 GITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVE 399

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D +  + + +S L+ +VLDEAD MLD+GF  +IE ++      + +
Sbjct: 400 KGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKE 459

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KR+ LMFSAT    I  LA NY K + + V +       SD+    + +  + +   ++ 
Sbjct: 460 KRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLE 519

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    +  ++F +T+         L +  F   ++ G+  Q +R +AL   R G+  V
Sbjct: 520 ILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTV 579

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G + 
Sbjct: 580 IVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKAT 627


>gi|24373075|ref|NP_717118.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347255|gb|AAN54562.1|AE015596_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 456

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/355 (36%), Positives = 189/355 (53%), Gaps = 25/355 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT AF L +   L A+     PA 
Sbjct: 15  AITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAK-----PAD 69

Query: 74  APL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            PL  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+V T
Sbjct: 70  KPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDILVAT 129

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D I    L++S +  +V+DEAD MLDLGF  DIE +        + ++FSAT S 
Sbjct: 130 PGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTMLFSATYSD 189

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           A+  L+         VN+A EN   S ++     V    +   +  ++  +  +  +VF 
Sbjct: 190 AVKQLSHKMLNQPQWVNVA-ENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFA 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSG--------ELSQQERSNALQMMRDGRARVCIATDV 303
           ST        K  AEHL Q + L G        + +Q  R+  L   + G+ RV +ATDV
Sbjct: 249 ST--------KECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDV 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           AARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 301 AARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
           SA   + ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  SAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLSLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPASCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYETQKMGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V +    L         +  +L Q++R++ +   + G+  V +ATD+ ARGI
Sbjct: 250 IFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFV 349


>gi|225562444|gb|EEH10723.1| ATP-dependent RNA helicase EIF4A [Ajellomyces capsulatus G186AR]
          Length = 386

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 171/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ QQ+R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQQQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
 gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
          Length = 428

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 181/341 (53%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHYLLTHPS 76

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + + LQNG  
Sbjct: 77  IEGKKVNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLKVLQNGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   ++++ ++ VVLDEAD M DLGF  DI ++    P   +R  L+
Sbjct: 137 ILIGTTGRLIDYAKQGHIDLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPAVTERLNLL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA         + +    +    I       +  ++   +  +L     
Sbjct: 197 FSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLLEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 ERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
 gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 444

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 182/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  PQ++ +AL+++GY   T +Q   +   +  +DVL SA TG+GKT AF L     LL
Sbjct: 13  FDLAPQLL-KALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQHLL 71

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 72  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVFNK 129

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF    E I   +  +R+ L
Sbjct: 130 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQTL 189

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A    KD V+ N     R+   I+   Y A        ++ I  + 
Sbjct: 190 LFSATLEGELLMDFASRLLKDPVQFNAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 244

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R +V   +++L +   +   L GE++Q +R+ A+  +++    
Sbjct: 245 RFIENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVT 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V
Sbjct: 305 VLVATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAV 353


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +TRA   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|209882078|ref|XP_002142476.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209558082|gb|EEA08127.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 538

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 187/365 (51%), Gaps = 27/365 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFS 70
           E LS   +   TS+Q   +   ++ +D++  A+TGSGKT+AF L L S +  L   +  +
Sbjct: 147 ELLSSIKHDKPTSIQMQCIPIGIQMRDLIGIAETGSGKTLAFLLPLLSYVYKLPLLNFDT 206

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P  L +AP RELA+Q+  E + L  K  G+     +GG SV ++  +L+ G  I++
Sbjct: 207 AQDGPYGLILAPARELALQIELEAQKLLKKEIGIRTLSIVGGRSVEKQAFELRRGVEIII 266

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------------ 177
            TPGR+ D +      ++    ++LDEAD M+D+GF D + +ILD  P            
Sbjct: 267 ATPGRMRDCLEKSLTVLTQCNYIILDEADRMVDMGFEDCLNYILDQIPANYERGSEEGNT 326

Query: 178 ----------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
                       R   MFSAT+   +  +A+ Y K  + V I         I      ++
Sbjct: 327 KILKNRYGCRNHRITQMFSATMQSEVEKIARKYLKFPLYVTIGDMGSGKKSIQQILNFIS 386

Query: 228 LSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            + + + ++N+L  +       I+F + + +V    + +A + F+V+ L G   Q++R N
Sbjct: 387 ENKKQSTLINVLNNYEYAIPPIIIFVNQKKTVDIVCRSIASNGFKVIGLHGGKIQEQREN 446

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L + R+G   + +ATDVA RGID+ ++ LVI+ ++ S  +   HR GRTGRAG+ G+++
Sbjct: 447 NLNLFRNGIYDILVATDVAGRGIDIANVNLVINYDVPSTIDTYTHRIGRTGRAGKSGVAI 506

Query: 346 FVIPQ 350
             + Q
Sbjct: 507 SFVTQ 511


>gi|164657394|ref|XP_001729823.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
 gi|159103717|gb|EDP42609.1| hypothetical protein MGL_2809 [Malassezia globosa CBS 7966]
          Length = 402

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q   + P ++  DV+  AQ+G+GKT  F +A+         R  P   A  A
Sbjct: 48  GFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSVAILQ-------RIDPNLKAVQA 100

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+   +  L     +    CIGG +V  +   L +GA +VVGTPGR+ D
Sbjct: 101 LVLAPTRELAQQIQNVVVALGDYMNIQCHACIGGTNVREDMARLSDGAQVVVGTPGRVYD 160

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  +     HLK   LDEADEML  GF+D +  +    P+  ++++ SAT+   +  + 
Sbjct: 161 MINRRAFRTDHLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQVVLLSATMPEDVLAVT 220

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D VR+ +  +      I    + V   + +   + ++        A++FC+TR  
Sbjct: 221 KKFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKFETLTDLYETVTITQAVIFCNTRRK 280

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V A+ G++ QQ+R   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 281 VDWLTEQLHAMEFTVSAMHGDMDQQQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 340

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 341 INYDLPTNRENYIH 354


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
 gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
          Length = 688

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 192/353 (54%), Gaps = 11/353 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 271 QCFAEYPDLLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 329

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
           T      R +   A + L +APTRELA+Q+  E++    +   + AVC+ GG     +  
Sbjct: 330 TEYQSTPRGTRGGANV-LVLAPTRELALQIEMEVKKYSFRN--MKAVCVYGGGDRRMQIS 386

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPK 178
           DL+ GA I++ TPGRL D ++   +++S +  +VLDEAD MLD+GF   I + +LD  P 
Sbjct: 387 DLERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 446

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIV 236
            R+ +M SAT  P +  LA++Y K+ ++V + S +   +    + + +   DR+  + I 
Sbjct: 447 -RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIK 505

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +R        I+FC  +A     +  L    F    + G   Q +R  A+  ++ G  
Sbjct: 506 SFVRNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAV 565

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I
Sbjct: 566 HILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFI 618


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 184/352 (52%), Gaps = 15/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFV 352


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 185/361 (51%), Gaps = 11/361 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLA 64
           ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L AL   L  
Sbjct: 9   DLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPALQYLLDF 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  PA     L + PTRELA+Q+  +   L   T + +    GGV        L   
Sbjct: 69  PRKKSGPARM---LILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHADILSTT 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL ++I G+  +   ++ +VLDEAD MLD+GF   ++ +      +++ L+
Sbjct: 126 QDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRWRKQTLL 185

Query: 185 FSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-- 241
           FSAT+    I    ++  K+   ++  S  R+   I         +D     ++IL++  
Sbjct: 186 FSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKI---TQWYHRADSAKHKLDILKHII 242

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A+ +I+F  TR  +      L       V + GE+ Q  R+NA+   RDG   V +A
Sbjct: 243 TEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINVLLA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   ER+ 
Sbjct: 303 TDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIERVA 362

Query: 361 R 361
           R
Sbjct: 363 R 363


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 189/347 (54%), Gaps = 8/347 (2%)

Query: 4   FENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P   QV+ +ALS   + + T +Q   L P L   D+   AQTG+GKT+AF +A   
Sbjct: 11  FADLPINEQVV-KALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFH 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL+          P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R  
Sbjct: 70  YLLSNPQ--PTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREK 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPK 178
           L+ G  I++GT GR+ D+ +    +++ ++  VLDEAD M DLGF  DI ++ +   +P 
Sbjct: 128 LEEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPNPS 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA  +  +   V +  E +  + I       +  D+   ++++
Sbjct: 188 ERLSMLFSATLSYRVQELAYEHMNNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSL 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF +T+ S  + +  L     +V  LSG++ Q +R   L+    G+  + 
Sbjct: 248 MEEEWPDKAIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+
Sbjct: 308 VATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSI 354


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 180/342 (52%), Gaps = 8/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +LA+  +  P   
Sbjct: 42  LKKFQYEKPTPIQSQTIPAIMSGRDLIGIARTGSGKTLAFLLPMFRHILAQ-PKTVPGDG 100

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            + L ++PTRELA+Q+  E +      G+ VA   GG S+  +  DL+ GA IVV TPGR
Sbjct: 101 MIGLIMSPTRELALQIFSECKKFTKNLGLRVACIYGGASISEQIADLKRGADIVVCTPGR 160

Query: 135 LCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +      I++L+ V   VLDEAD M D+GF   I  ++D+    R+ +MFSAT  P
Sbjct: 161 MIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQIMCVIDNIRPDRQTIMFSATFPP 220

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIV 249
            +   AK      + +     +   SDID    +     R   ++ +L   YH  +  ++
Sbjct: 221 KVENAAKKILTKPLEIIAGGRSIVSSDIDQHVEVRPSETRFRRLIELLSLWYHKGQ-ILI 279

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + +     + LA   +Q ++L G   Q +R   +   ++    + IAT +A+RG+D
Sbjct: 280 FTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETITDFKNKVKTILIATPLASRGLD 339

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           + DL LV++ +   + E+ +HR GRTGRAG KG +  F+ P+
Sbjct: 340 IKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNKGTAYTFITPE 381


>gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ E L ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-EVLEKKGFHDCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 181/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  KD   V+     R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
           sapiens]
          Length = 763

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 454

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 574

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 623


>gi|52143321|ref|YP_083508.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|196039663|ref|ZP_03106967.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228958407|ref|ZP_04120130.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229091118|ref|ZP_04222341.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|300118169|ref|ZP_07055917.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
 gi|51976790|gb|AAU18340.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           E33L]
 gi|196029366|gb|EDX67969.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228692249|gb|EEL45985.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|228801265|gb|EEM48159.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|298724480|gb|EFI65174.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
          Length = 389

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPHLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T +QE  +   L  KD+L  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIMSML---DDGGFPH 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   + ++PTRELA Q+ + ++   Y    V      GG   +R   E + L+ GA I+
Sbjct: 71  DAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQEIKSLRLGADII 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI+   +++S +   VLDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LAK   K+ V + +A  ++    I  +A L     +   + +I +       I
Sbjct: 191 MPPKIEQLAKTLLKNPVEIKLAV-SKPAEKIAQKAYLCYEPQKLKVLEDIFKAGHLNRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +  V    + L         +  +LSQ+ER   +   + G   V +ATD+ +RGI
Sbjct: 250 IFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKFKSGATDVLVATDILSRGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I
Sbjct: 310 DIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLI 349


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 514 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 572

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 573 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 632

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 633 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 692

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + I
Sbjct: 693 PRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSII 752

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 753 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 812

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 813 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 872

Query: 369 WEPA 372
             PA
Sbjct: 873 LIPA 876


>gi|257067967|ref|YP_003154222.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256558785|gb|ACU84632.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 498

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 186/361 (51%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P V+  AL+  G    T +Q A L   L  +DVL   +TGSGKT AF L L + LL E
Sbjct: 10  GVPSVLTGALAPLGITEPTPIQAATLPDSLSGRDVLGRGRTGSGKTYAFLLPLVARLL-E 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P +L +APTRELA Q+   L+ L A  G+  AV  GGV  + +   L  G 
Sbjct: 69  QPRKRAARRPRSLVLAPTRELASQLAESLKPLEAAAGLRSAVVFGGVGQNPQVNALARGI 128

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++  PGRL D + G+G  ++S ++  V+DEAD M D+GF   +  IL+++P + + ++
Sbjct: 129 DVLIACPGRLLD-LMGQGHADLSAIEITVIDEADHMADMGFLPMVRRILEATPSRGQRML 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L K +  + V  +          +++  + V  + R + + ++    G 
Sbjct: 188 FSATLDSGVNKLVKQFLHEPVTHSADPATSPVGTMEHHVLEVDAAARFDVLRDLAAAPG- 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+       + LA      V L G LSQ  R+  L+    G A   + TD+A
Sbjct: 247 -RTIMFTRTKYGAKNLARKLAARGVDAVDLHGNLSQNARTRNLEAFGSGTATTMVCTDIA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + ++ +V+HA+     +  LHRSGRT RAG  G  + V   + +R    L R+A 
Sbjct: 306 ARGIHVDEVAIVVHADPPVEHKAYLHRSGRTARAGESGTVITVQTPDQKRDVSDLMRKAG 365

Query: 365 V 365
           +
Sbjct: 366 I 366


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P AL +APTREL  
Sbjct: 207 RDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVS 266

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+L  G  ++V TPGRL D +    +++S+
Sbjct: 267 QIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSN 326

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 327 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDY 386

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L  +     I+F  T+         L
Sbjct: 387 IFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFL 446

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  V++ +L  +
Sbjct: 447 YDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGD 506

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 507 IDDYVHRIGRTGRAGNVGIATAFFNRNNRNVVKGMIELLSEANQEV 552


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 21  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 74

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 75  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 135 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 194

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 195 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 255 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 315 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 373


>gi|284992234|ref|YP_003410788.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065479|gb|ADB76417.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 474

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + E L+  G      +Q A L   L  +DVL   +TGSGKT+AF L L + L A 
Sbjct: 12  GVPAPLVEVLTASGITAPFPIQVATLPDSLAGRDVLGRGRTGSGKTLAFSLPLVARLAAS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   P +L + PTRELA QV   ++ +    G+      GGV  + + + L  G 
Sbjct: 72  VSRRQPKR-PRSLILVPTRELANQVAAVVDPMARALGMKTTTIFGGVGQNPQVQALAGGI 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++  PGRL D I     ++  ++  +LDEAD M DLGF   ++ ++D +P+  + L+F
Sbjct: 131 DVLIACPGRLEDLIGQGHCDLGAVEITILDEADHMADLGFLPGVKRLMDRTPEVGQRLLF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K Y  + V  ++       S + +  + V  +D+   +  +    G  
Sbjct: 191 SATLDNGVDVLVKRYLSNPVTHSVDPAVAPVSTMTHHVLQVQTADKAEVVRQL--ASGLG 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+    +  K L       V L G LSQ  R   L+    G +RV  ATD+AA
Sbjct: 249 RSVLFTRTKHQAKKLAKQLTASGIPAVDLHGNLSQNARERNLEAFTTGASRVLCATDIAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+H +  +  +  LHRSGRT RAG +G  V V   +       L R+A +
Sbjct: 309 RGIHVDDVALVVHVDPPAEHKAYLHRSGRTARAGAEGAVVTVSTPDQAGEVRTLARQAGI 368

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                 AP V  +R   A+
Sbjct: 369 ------APKVSVVRPGAAE 381


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P AL +APTREL  
Sbjct: 236 RDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVS 295

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+L  G  ++V TPGRL D +    +++S+
Sbjct: 296 QIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSN 355

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 356 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDY 415

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L  +     I+F  T+         L
Sbjct: 416 IFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFL 475

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  V++ +L  +
Sbjct: 476 YDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGD 535

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 536 IDDYVHRIGRTGRAGNVGIATAFFNRNNRNVVKGMIELLSEANQEV 581


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 621

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 206/387 (53%), Gaps = 10/387 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE+ P ++ E + ++ +   + VQ       +   D++  AQTG+GKT+AF L     + 
Sbjct: 203 FEDYPDIL-EEIQKQKFEVPSPVQCQTWPVIMSGHDLIAIAQTGTGKTLAFLLPAFIHID 261

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +    S    P  L +APTREL +Q+  E++  Y+  G+      GG S  +++  L+ 
Sbjct: 262 FQPTPRSERKGPSILVLAPTRELVLQIESEVK-KYSYKGIKAMSIYGGASSGKQKEVLRK 320

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D +    +++S +  ++LDEAD MLDLGF   I   L      R+ +
Sbjct: 321 GVEIVIATPGRLNDFVGSGAIDLSDVTFLILDEADRMLDLGFEPQIRVSLLRVRPDRQTI 380

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYH 242
           M SAT  P +  LAK+Y  + ++V + S +    +   + +L+    +++  + + L+  
Sbjct: 381 MTSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEEEKEVWLDDFLKSC 440

Query: 243 GAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            A +  I+F + + +V + +  L    + V ++ G   Q +R  AL+ +R+G   + IAT
Sbjct: 441 SADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNILIAT 500

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ D+ +VI+ + + + E  +HR GRTGRAG+ G+++ ++ +    +A+ L  
Sbjct: 501 DVASRGIDINDITVVINYDFTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWGKAKDLVE 560

Query: 362 EANVS------VVWEPAPSVEAIRERD 382
               S       + E A   EA +ERD
Sbjct: 561 VMEKSGQDVPPELQEMASRYEAKKERD 587


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 183/356 (51%), Gaps = 7/356 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E +++ GY   T +Q+  +   +  +D++  AQTGSGKT AF + + S LL +    
Sbjct: 103 IIRENVTKSGYKVPTPIQKVSIPVIVAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDL 162

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P A+ ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G H+++
Sbjct: 163 E-IGKPQAVIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQNECITKGCHVLI 221

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---RMLMFS 186
            TPGRL D +    +     + VVLDEAD MLD+GF + +   + + P  R   + LMFS
Sbjct: 222 ATPGRLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFM-THPTMRPEHQTLMFS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA  +  + V V I       SD+      V    + + ++ ILR   A  
Sbjct: 281 ATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLMEILREQ-ADG 339

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VAAR
Sbjct: 340 TIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSVAAR 399

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           G+D+ ++  V++ ++ +N ++ +HR GRTGR G  G +  F  P + Q  A  L +
Sbjct: 400 GLDIKNINHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDHDQALAGDLIK 455


>gi|156553129|ref|XP_001599839.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Nasonia vitripennis]
          Length = 423

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 173/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +   
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCVKGHDVIAQAQSGTGKTATFSISILQKIDTN 115

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 116 INECQ------ALILAPTRELAQQIQKVVIALGDFMHAQCHACIGGTNVREDMRRLEQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +    P    +++ 
Sbjct: 170 HVVVGTPGRVFDMISRRALRSNSIKLFVLDEADEMLSRGFKDQIYDVFKLLPXXXXVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ VR+ +  E      I    + +   D + + + ++      
Sbjct: 230 SATMPSDVLEVSKCFMREPVRILVKKEELTLEGIKQFFIYIEREDWKLDTLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T  + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTDHMHQKDFTVSAMHGDMEQRERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIH 375


>gi|320178071|gb|EFW53051.1| ATP-dependent RNA helicase RhlB [Shigella boydii ATCC 9905]
          Length = 421

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ E+L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PKVV-ESLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 187/354 (52%), Gaps = 12/354 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L    +V  + +Q   + P L  +DV+  AQTGSGKT A+ L   + +  +     P 
Sbjct: 14  DGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFLNKVARQE---LPK 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVV 129
               A+ +APTRELA Q+ +E+E       V      GG   ++  ++RR +  GA IV+
Sbjct: 71  EHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQQRRGMALGADIVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL   +R    ++SH++  VLDEAD MLD+GF +DI  I  + P+  + +MFSAT+
Sbjct: 131 ATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKALPEDCQHVMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--- 246
              I  L+++   D V V +A      S +  +   +    +   I+  L  +       
Sbjct: 191 PKEILKLSESILVDPVLVELAVAKPPKSIM--QTAYICYDAQKLPIIRSLFTNPESEVSR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+A+V    + L+     V  +  +LSQ+ R   L+  R GR +V +ATD+ AR
Sbjct: 249 TIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVLVATDIVAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           GID+ D+ +VI+ E+  + E+ +HR GRT R A  KG+++ ++  + Q+   RL
Sbjct: 309 GIDIDDIAVVINYEVPRDFEDYVHRIGRTARGADGKGLAITLVSPSDQQDFARL 362


>gi|307110010|gb|EFN58247.1| hypothetical protein CHLNCDRAFT_30080 [Chlorella variabilis]
          Length = 551

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 8/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P+ +   +   G+   + +Q       L  +D++  A+TGSGKT+A+ L     + A+
Sbjct: 134 SFPEYVLAEIQRAGFTEPSPIQAQGWPMALLGRDLVGIAETGSGKTLAYLLPGVVHINAQ 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               SP   P+ L +APTRELAVQ+  E    +  T  + + C+ GG     +  DL+ G
Sbjct: 194 A-HLSPGDGPIVLCLAPTRELAVQIQNECA-RFGSTSRIKSTCVYGGAPKGPQANDLRRG 251

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L+
Sbjct: 252 VEIVIATPGRLIDFLESRTTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLL 311

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL-RYH 242
           +SAT    I TLA+ +  +  +V I S + + +  I       A  ++   +V +L +  
Sbjct: 312 WSATWPKEIQTLAREFLNNPYQVLIGSPDLKANHRITQIFDFPAEHEKYQKLVRVLEKEM 371

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F  T+      T+ L    +  +++ G+ SQ ER   L   + G+  + IATD
Sbjct: 372 DGRRILIFLETKKGCDAVTRQLRMDGWPALSIHGDKSQHERDWVLAEFKAGKHPIMIATD 431

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERL 359
           VAARG+D+ D+++VI+ ++ S  E+ +HR GRTGRAG  G +  F    N  M R+  ++
Sbjct: 432 VAARGLDVKDIKMVINYDMPSCAEDYVHRIGRTGRAGASGAAYSFFTAANGRMARQLVQI 491

Query: 360 FREANVSV 367
             EA+ +V
Sbjct: 492 LEEASQAV 499


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 196/386 (50%), Gaps = 11/386 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I + L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +    +   
Sbjct: 213 LPHAIIDCLKKKGIKKPTPIQIQGIPVILSGRDMIGIAFTGSGKTLVFTLPMVLFAMEME 272

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGR---ELEWLYAKTG----VVVAVCIGGVSVHRE 117
            +    S   P  L I P+RELA Q      E+    +K G    +   +C+GG+    +
Sbjct: 273 LKLPLISGEGPFGLIICPSRELARQTYDGVVEMAGALSKAGGYPPLRTLLCMGGIDFREQ 332

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G H++V TPGRL D +  K +N+   K + LDEAD ++DLGF ++I  ++D+  
Sbjct: 333 EPELRKGVHMIVATPGRLLDMLNKKKINLISCKYLGLDEADRLIDLGFEEEIRGVMDNFT 392

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++     V VN+      + D+      V    +   ++ 
Sbjct: 393 AQRQTLLFSATMPKKIQNFARSALVRPVEVNVGRAGAANLDVIQEVEYVKQEAKIVYLLE 452

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       ++FC  +  V    + L     + V+L G+ +Q+ER  A++M ++G+  V
Sbjct: 453 CLQ-KTPPPVLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIKMFKEGKKDV 511

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRA 356
            IATDVA++G+D PD++ VI+ ++    EN +HR GRTGR       ++ +IP+   +  
Sbjct: 512 LIATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRCVCIICYTMRMIPREHIQED 571

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
            +  ++       E  PS+E   +R+
Sbjct: 572 SKRHQQQQFEAYQEEFPSLEESSQRN 597


>gi|255719590|ref|XP_002556075.1| KLTH0H04466p [Lachancea thermotolerans]
 gi|238942041|emb|CAR30213.1| KLTH0H04466p [Lachancea thermotolerans]
          Length = 553

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/320 (35%), Positives = 177/320 (55%), Gaps = 16/320 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           L  KDV+  A+TGSGKT AFG+     L   + +   +     L I+PTRELA Q+   L
Sbjct: 176 LSGKDVVGVAETGSGKTFAFGVPAIHNLKTADAK---SQGVQVLVISPTRELASQIYDNL 232

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             L  K GV      GGV    +R  L+  + +VV TPGRL D I      +S++K +VL
Sbjct: 233 ILLTKKAGVNCCCVYGGVPKDEQRSQLKK-SQVVVATPGRLLDLIEEGSARLSNVKYLVL 291

Query: 155 DEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           DEAD ML+ GF +DI+ I+ S+    R+ LMF+AT    +  LA  +    V+++I   N
Sbjct: 292 DEADRMLEKGFEEDIKRIIGSTKATGRQTLMFTATWPKEVRELANTFMDSPVKISIG--N 349

Query: 214 RQHSDIDYRAV-LVALSD---RDNAIVNILRYH--GAKN---AIVFCSTRASVSRFTKVL 264
           R     + R   +V + D   +D  ++ +L+ +  GA+     ++F   +   +R  + L
Sbjct: 350 RDELSANKRITQIVEVIDPFKKDRKLLELLKKYQSGARKNDKVLIFALYKKEAARVERNL 409

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             + + V A+ G+LSQQ+R+ AL   + G + + +ATDVAARG+D+P+++ VI+      
Sbjct: 410 KYNGYNVAAIHGDLSQQQRTQALNEFKSGESNMLLATDVAARGLDIPNVKTVINLTFPLT 469

Query: 325 PENLLHRSGRTGRAGRKGMS 344
            E+ +HR GRTGRAG  G +
Sbjct: 470 VEDYVHRIGRTGRAGLTGTA 489


>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 250

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 251 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 307

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 423

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 424 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 483

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 484 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 543

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 544 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592


>gi|46117016|ref|XP_384526.1| hypothetical protein FG04350.1 [Gibberella zeae PH-1]
 gi|91206844|sp|Q4IEK8|HAS1_GIBZE RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 590

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 197/348 (56%), Gaps = 15/348 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +  +T +Q   + P L  +DVL +A+TGSGKT+AF + +   L   + RF P 
Sbjct: 128 KAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVIEML--SSLRFKPR 185

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 186 NGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLAKGVNLLI 242

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSAT 188
            TPGRL DH++       +LK++V+DEAD +L++GF D++  I+   PK+ R+ ++FSAT
Sbjct: 243 ATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKVLPKEDRQTMLFSAT 302

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGA 244
            +  +  LA+ + +   + +N+  E +Q+S ++   +  ++  +D R   + + L+ +  
Sbjct: 303 QTTKVEDLARISLRPGPLYINV-DEEKQYSTVEGLEQGYIICETDMRFLLLFSFLKRNLK 361

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + +    I TDVA
Sbjct: 362 KKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVA 421

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQN 351
           ARG+D+P ++ +I  +   +P + +HR GRT R +  KG S+  +  N
Sbjct: 422 ARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNNKGRSLMFLQPN 469


>gi|332520631|ref|ZP_08397093.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043984|gb|EGI80179.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 451

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 197/389 (50%), Gaps = 17/389 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL + GY   T +Q    N     KD++  AQTG+GKT A+ L +   L   
Sbjct: 7   NLNTPLYNALDDLGYTTPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPVLRNL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              FS    P  L + PTREL VQV  E+E L       V    GG +++ +++ +  G 
Sbjct: 64  --PFSKQENPRVLVLVPTRELVVQVVEEIEKLSKYINNRVLGVYGGTNINTQKQAIAQGI 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + L +  ++ +++DE D MLDLGFR  +  I D  P +R+ +MF
Sbjct: 122 DILVATPGRLYDLALSRVLQLKSIQKLIIDEVDVMLDLGFRHQLINIFDLLPTRRQNIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT++  +  L  ++ K   +V+IA+      +I    Y+A       + N + ++L+  
Sbjct: 182 SATMTKDVDDLIVDFFKSPEKVSIATSGTPLENIKQTRYKA--PNFYTKLNLLKHLLQDE 239

Query: 243 GAKNAI-VFCSTRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              N + +F + +    R  + L  E+  ++  +    +Q  R  +++  R+G  R+ +A
Sbjct: 240 ETYNKVLIFVAYKKMADRLFEALDEEYNEELCVIHSNKTQNYRLRSIEQFREGINRILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+ ++  VI+ +    PEN +HR GRTGRA R+G ++    +  Q+  E + 
Sbjct: 300 TDVMARGLDIDNVSHVINFDTPEYPENYMHRIGRTGRAEREGHALVFTTEKEQQAIEDIE 359

Query: 361 REANVSVVWEPAP-----SVEAIRERDAQ 384
              ++++  E  P     S E I E   Q
Sbjct: 360 ALMDMTINVEEIPDTVEISTELIEEERPQ 388


>gi|218198307|gb|EEC80734.1| hypothetical protein OsI_23209 [Oryza sativa Indica Group]
          Length = 921

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 184/344 (53%), Gaps = 14/344 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76
           GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF L     +  L   DR        
Sbjct: 472 GYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDRDQKRPPIS 531

Query: 77  ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGR 134
            + + PTRELA Q   E  + L     + V + IGG  +  E++ +  N   I+V TPGR
Sbjct: 532 VVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATPGR 591

Query: 135 LCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           L DH+    G    +  +K ++LDEAD +LD+GFR DIE I+ + PK+R+ L+FSAT+  
Sbjct: 592 LKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPD 651

Query: 192 AITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA- 247
            +  +     ++D   VN   E  +  HS +    V+  L  + + +  +L  H ++N  
Sbjct: 652 EVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSILYGLLTDHISENVD 711

Query: 248 ---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC+T    S   ++L+E    V  +     Q  R+   +  ++ +  + +++DV+
Sbjct: 712 YKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFKESKGLILVSSDVS 771

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++
Sbjct: 772 ARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLL 815


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 182/355 (51%), Gaps = 5/355 (1%)

Query: 10   VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +I E +++ GY   T +Q+  +      +D++  AQTGSGKT AF + + S LL +    
Sbjct: 1058 IIRENVTKSGYTVPTPIQKVSIPVIAAGRDLMACAQTGSGKTAAFLVPILSKLLDDPQDL 1117

Query: 70   SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 P A+ ++PTRELA+Q+  E      ++ + +++  GG S   +   +  G H+++
Sbjct: 1118 E-FGKPQAVIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQNECITKGCHVLI 1176

Query: 130  GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSA 187
             TPGRL D +    +     + VVLDEAD MLD+GF + +   ++    +   + LMFSA
Sbjct: 1177 ATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNHQTMRPEHQTLMFSA 1236

Query: 188  TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
            T    I  LA  + K  V V I       SD+      V    + + ++ ILR   A   
Sbjct: 1237 TFPEEIQRLAGEFLKSYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLMEILREQ-ADGT 1295

Query: 248  IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VAARG
Sbjct: 1296 IVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVIIATSVAARG 1355

Query: 308  IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
            +D+ +++ V++ ++ +N ++ +HR GRTGR G  G +  F  P   Q  A  L +
Sbjct: 1356 LDIKNIKHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDQDQALAGDLIK 1410


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P S          P AL +APTREL  
Sbjct: 236 RDLMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVS 295

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V   V  GG  +  + R+L  G  ++V TPGRL D +    +++S+
Sbjct: 296 QIFEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRVSLSN 355

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 356 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDFLKDY 415

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L  +     I+F  T+         L
Sbjct: 416 IFLSVGRVGSTSENITQKVLYVEDDEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFL 475

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  V++ +L  +
Sbjct: 476 YDQGFPATAIHGDRSQYEREKALAAFKSGTAPILVATAVAARGLDIPNVSHVVNYDLPGD 535

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 536 IDDYVHRIGRTGRAGNVGIATAFFNRNNRNVVKGMIELLSEANQEV 581


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|150024755|ref|YP_001295581.1| ATP-dependent RNA helicase DbpA [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771296|emb|CAL42765.1| ATP-dependent RNA helicase DbpA [Flavobacterium psychrophilum
           JIP02/86]
          Length = 448

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/336 (31%), Positives = 180/336 (53%), Gaps = 10/336 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  +L  +QE   +  L + +VL+ + TGSGKT+AF L +   +L EN      ++   L
Sbjct: 15  GIESLNEMQEVAQDAILNDNNVLLLSPTGSGKTLAFLLPIFE-MLQEN-----ITSVQCL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + P+RELA+Q+  E  W    T   V VC GG S+  E ++L N   +++GTPGR+ DH
Sbjct: 69  ILVPSRELALQI--EQVWKKMGTSYKVNVCYGGHSIDTEIKNLSNPPAVLIGTPGRIADH 126

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I     ++  ++ ++LDE D+ L LGF + + FI++  PK  + ++ SAT    I    +
Sbjct: 127 IDRGTFSVDAIQTLILDEFDKSLQLGFHEQMSFIINRLPKLNKRVLVSATSDIEIPKYTR 186

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                 +   I SE  + +++ ++ V+    D+  ++ N++    +++AI+FC+ R +  
Sbjct: 187 VINPTVLDF-IPSE-EEKTNLLFQLVVSKDKDKIGSLFNLICSLKSESAIIFCNHRDAAE 244

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R +  L E         G + Q ER  AL   R+G     I TD+AARG+D+P+++ VIH
Sbjct: 245 RISDTLNEKGIYATYYHGGMDQDERERALIQFRNGSVSYLITTDLAARGLDIPEMKHVIH 304

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             L S  +   HR+GRT R    G +  VI ++ ++
Sbjct: 305 YHLPSKEDEFTHRNGRTARMLATGTAYLVIHESEKK 340


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 202/373 (54%), Gaps = 11/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +
Sbjct: 53  NLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 112

Query: 66  -NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D  S    + P  + ++PTREL +Q+  E       + + VAV  GG +V  +  ++ 
Sbjct: 113 PKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIA 172

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++         
Sbjct: 173 RGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETT 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++ N++  +
Sbjct: 233 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 292

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  + G+  + 
Sbjct: 293 IEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCIL 352

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRA 356
           +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G  +S +   Q++   A
Sbjct: 353 VATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVA 412

Query: 357 E--RLFREANVSV 367
           +  ++ R+A+ SV
Sbjct: 413 DLSKILRQADQSV 425


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/369 (32%), Positives = 186/369 (50%), Gaps = 10/369 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-A 57
           +K F N+    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + A
Sbjct: 2   IKTFANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L     +  PA     L + PTRELA+QV  + + L   T + +    GGV     
Sbjct: 62  LQYLLDFPRRKAGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEH 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +     
Sbjct: 119 ADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECR 178

Query: 178 KKRRMLMFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +++ L+FSAT+    +     +  KD   V+     R+   I               ++
Sbjct: 179 WRKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   
Sbjct: 239 KKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVN 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQ 353
           + +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M 
Sbjct: 299 ILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMM 358

Query: 354 RRAERLFRE 362
            R ER  +E
Sbjct: 359 ARVERYIKE 367


>gi|90414227|ref|ZP_01222207.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324674|gb|EAS41215.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 437

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ + L  +G+ N T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PTVL-QGLDAQGFHNCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNHLL---- 72

Query: 68  RFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PAS       P A+ +APTRELA+Q+  +   L A TG+   +  GG +  ++++  
Sbjct: 73  -LNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKVF 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
             G  I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+     +PK 
Sbjct: 132 AEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKA 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +      V +  + +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVKELAFEHMNSPESVVVEPDQKTGHRIQEELFYPSNQEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGEIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGNSI 357


>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
 gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
 gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
 gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
 gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
          Length = 703

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 190/349 (54%), Gaps = 9/349 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++ E +++ G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 286 QCFAEYPDML-EEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 344

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T      R +   A + L +APTRELA+Q+  E++  Y+  G+      GG + + +  D
Sbjct: 345 TEYQSTPRGTRGGANV-LVLAPTRELALQIEMEVK-KYSFRGMKAVCVYGGGNRNMQISD 402

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKK 179
           L+ GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I + +LD  P  
Sbjct: 403 LERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRP-D 461

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           R+ +M SAT  P +  LA++Y K+ ++V + S +    HS      ++    D+ N I +
Sbjct: 462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521

Query: 238 ILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++   + +  I+FC  +      +  L    F    + G   Q +R  A+  ++ G  R
Sbjct: 522 FVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+
Sbjct: 582 ILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSI 630


>gi|224122544|ref|XP_002318863.1| predicted protein [Populus trichocarpa]
 gi|222859536|gb|EEE97083.1| predicted protein [Populus trichocarpa]
          Length = 652

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 196/382 (51%), Gaps = 15/382 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EAL +RG   L  +Q       L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 70  ISEPLREALKKRGIEALFPIQARTFEDILNGCDLVGRARTGQGKTLAFVLPILESLVNGP 129

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + S  +     P  L + PTRELA QV  + +      G+      GG S   +   L+
Sbjct: 130 AKASRKTGYGRPPSVLVLLPTRELATQVFEDFKVYGGAVGLNSCCVYGGASYQPQEFALK 189

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGR+ DHI    +++S LK  VLDE+DEML +GF +D+E IL      R++
Sbjct: 190 RGVDIVVGTPGRIKDHIEKGNIDLSLLKFRVLDESDEMLRMGFVEDVELILGKVEDVRKV 249

Query: 183 --LMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSD--RDNAIVN 237
             L+FSAT+   +  ++  + K   + +++    +  +  + R +++  S       I +
Sbjct: 250 QTLLFSATLPDWVKNISSRFLKPTKKTIDLVGNEKMKASTNVRHIVLPCSTAAMPQVIPD 309

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++  +G+    I+F   R S +     LA  L    AL GE+ Q +R   L   R G+  
Sbjct: 310 VISCYGSGGRTIIFTEKRESANE----LAGLLPGARALHGEIQQSKREVTLSGFRSGKFL 365

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +AT+VAARG+D+ D++L+I  E  ++ E  +HRSGRTGRAG  G++V +     +   
Sbjct: 366 TLVATNVAARGLDINDVQLIIQCEPPNDVEAYIHRSGRTGRAGNSGVAVMLY-DPRRSNI 424

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
            ++ RE+ V      AP  E I
Sbjct: 425 SKIQRESGVKFEHITAPRAEDI 446


>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380632|sp|A7TK63|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 431

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 189/357 (52%), Gaps = 21/357 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+     + T++Q+  +   L+ +D +  A+TGSGKT+AF   + S     +D     
Sbjct: 15  ESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQW--SDD----P 68

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S    + + PTRELA+Q+  +   L +   + V + +GG S+ ++  +LQ   H ++ TP
Sbjct: 69  SGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHFIIATP 128

Query: 133 GRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFS 186
           GRL  HI   G  +    S +K +VLDEAD +L   F  D+   +   P  +KR+ L+F+
Sbjct: 129 GRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIAKLPPKQKRQTLLFT 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ------HSDIDYRAVLVALSDRDNAIVNILR 240
           ATI+  +  L     +D+     A E          S +    +LV    ++  +  +L 
Sbjct: 189 ATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLKLEYLLVPEHVKEAYLYQLLT 248

Query: 241 YHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               K++  IVF +   +     + L     +V +L  ++ Q ER N+LQ  R   ARV 
Sbjct: 249 CEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERINSLQRFRANAARVL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           IATDVAARG+D+P +ELVI+ ++  +P+  +HRSGRT RAGR G ++ FV P+++ R
Sbjct: 309 IATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAISFVTPRDVSR 365


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 5/363 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 385 SLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LEEGE 443

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 444 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 503

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 504 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSATFP 563

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++    +   ++ +L ++  K A I+
Sbjct: 564 RAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLELLGHYQEKGAVII 623

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 624 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVCKLLVATSVAARGLD 683

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 684 VKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARYAGDIIKALELSGTA 743

Query: 370 EPA 372
            PA
Sbjct: 744 VPA 746


>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
 gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
          Length = 811

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 173/344 (50%), Gaps = 3/344 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + +   P   P+ L 
Sbjct: 312 YTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQRE-LRPGDGPIGLI 370

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL++Q+  E +       + V  C GG S   + + L+ G  IVV TPGR+ D +
Sbjct: 371 LAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCEIVVATPGRMIDMV 430

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 431 KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARD 490

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
              D VR+     N  + DI     +    L   +  + +++++      +VF + +A  
Sbjct: 491 ILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSEGGVLVFVTKKADA 550

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +  L       + L G++ Q +R+  +   +     + +ATDVAARG+D+P +  VI
Sbjct: 551 ETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDILVATDVAARGLDIPHIRNVI 610

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 611 NYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 654


>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 186/366 (50%), Gaps = 37/366 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+       T VQ A + P L   D + +A+TGSGKT+AF L +   LLA+        
Sbjct: 14  ALTSMSIKTPTEVQAACIPPLLAGTDCIGNAKTGSGKTIAFALPILQRLLAD------PY 67

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+  +   L A   +  AV +GG+ +  +  +L N  HIV+ TPG
Sbjct: 68  GIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPHIVIATPG 127

Query: 134 RLCDHIRGKG--LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           RL DH+R      ++S ++ +VLDEAD +L   F  ++  + +  P+ R+  +F+AT++P
Sbjct: 128 RLVDHLRSSSGEWDLSRVRFLVLDEADRLLTRTFSPELSHLFNVLPQDRQTCLFTATLTP 187

Query: 192 AITTLA--------------KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +I +LA              +  ++   R+   S  +QH       +LV    R+  +  
Sbjct: 188 SIESLADATARPGKQKPFVHRMNERQVRRIETVSTLKQH------YILVPSHVRETYLYY 241

Query: 238 ILR--------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +LR               I+FC+   + +  T VL     +  AL   L+Q+ER ++L +
Sbjct: 242 LLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRERLSSLSL 301

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVI 348
            R     V ++TDV +RG+D+ D+ +VI+ ++    E   HR GRT RAGR G+++ FV 
Sbjct: 302 FRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGGVAISFVT 361

Query: 349 PQNMQR 354
            ++  R
Sbjct: 362 ERDEDR 367


>gi|167536684|ref|XP_001750013.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771523|gb|EDQ85188.1| predicted protein [Monosiga brevicollis MX1]
          Length = 341

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 173/314 (55%), Gaps = 7/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P ++ +DV+  AQ+G+GKT  F ++   T+    D  S  +  L L
Sbjct: 27  GFEKPSAVQQRAIKPIVKGRDVIAQAQSGTGKTATFSISALQTI----DTTSRETQVLVL 82

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +  PTRELAVQ+ + +  L     V    CIGG SV  + R L  G HIV GTPGR+ D 
Sbjct: 83  S--PTRELAVQIQKVMLALGDYMSVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVFDM 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K ++LDEADEML+ GF+D I  I    P   ++++ SAT+   I  +  
Sbjct: 141 IQRRNLRTRNIKMLILDEADEMLNQGFKDQIYDIYRYLPPATQVVLLSATLPNEILEMTT 200

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 201 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKQKV 260

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q++R++ +   R G +RV I TDV ARG+D+  + LVI
Sbjct: 261 DWLTEKMREANFTVSSMHGDMLQKDRNDVMSEFRAGSSRVLITTDVWARGLDVQQVSLVI 320

Query: 318 HAELSSNPENLLHR 331
           + +L +N E  +HR
Sbjct: 321 NYDLPNNRELYIHR 334


>gi|32425487|gb|AAH09304.2| DDX27 protein [Homo sapiens]
          Length = 769

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 197 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 254

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 255 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 311

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 312 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 371

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 372 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 427

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 428 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 487

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 488 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 547

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 548 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 596


>gi|221130645|ref|XP_002155556.1| PREDICTED: similar to topoisomerase (DNA) III beta [Hydra
           magnipapillata]
          Length = 1349

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/437 (29%), Positives = 218/437 (49%), Gaps = 34/437 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY   T +Q       + ++DV+  A+TGSGKT+AF   L    +  N R S  
Sbjct: 121 KALYNSGYKAPTPIQAQTWPIAMFDRDVVSIAKTGSGKTLAF---LLPAYMKINLRRSQG 177

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  + L +APTRELA Q+  E E   +  G   A   GG     + + + +G  ++V TP
Sbjct: 178 TISV-LVLAPTRELATQIQLEAEKFGSVAGYYSACAYGGAPKRNQLQAINSGISVLVATP 236

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +    +N+S +  +VLDEAD MLD+GF   I  I+   P+KR+ LMFSAT    
Sbjct: 237 GRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIRCLPRKRQTLMFSATWPEE 296

Query: 193 ITTLAKN--YQKDAVRVNI----ASENRQHSDI--DYRAVLVALSDRDNAIVNIL--RYH 242
           +  LA +  YQ   +R+ I     S   Q +++   +  +L +  D+D  ++N++  R+H
Sbjct: 297 VRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSGEDKDGELINLIKSRFH 356

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             ++  ++F + + +    T +L        A+ G+  Q+ R   L   RDG   + +AT
Sbjct: 357 QNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREKTLAAFRDGSRPIMVAT 416

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RGID+  +  VI+ +L+++ E+ +HR GRTGRAG  G S       + R  + +++
Sbjct: 417 DLASRGIDVRGISAVINYDLANSTEDYVHRIGRTGRAGMSGESFTF----LTRSNDDIWK 472

Query: 362 EANVSVVWE-----PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP--- 413
              +  V       P P+V+ +  R   R  Q+    +    + ++   VL+    P   
Sbjct: 473 AIGIVEVMAKTGQYPPPAVQELINRVKMRQEQNK---ERRAAENEQFSKVLIVAEKPSVA 529

Query: 414 ----EKIAAGFLRIHRA 426
               E+++ G  R  R 
Sbjct: 530 KMIAEQLSGGHFRTRRG 546


>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 393

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 3/342 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+SERGY   T +Q+  +   L  KD++ +AQTG+GKT +F L L   L    D   
Sbjct: 12  IVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLLEKL--NTDNAI 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              +  AL + PTRELA+QV   +        +      GG  +  +++ L  G  I+V 
Sbjct: 70  RGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRLMQGIDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + L    L+ +VLDEAD+MLD+GF DD+  I D  P +R+ L+FSAT++
Sbjct: 130 TPGRLLDLAYQRALFFDDLEFLVLDEADKMLDMGFIDDLYKITDRLPHQRQSLLFSATLT 189

Query: 191 PAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            A+  LA +    DA  ++I+ +N+    I    + V    +   + +++       A++
Sbjct: 190 EAVRYLAADTVSDDATEISISPQNKTTPKIKQWLITVDKDTKSALLSHLINEQHWDQALI 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   + S ++  + L +      ++    SQ  R   L   + G+ +  IAT +AARGID
Sbjct: 250 FVEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKFLIATGIAARGID 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L  V++ +L    E  +HR GRTGRAG  G ++ ++ ++
Sbjct: 310 IDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSKD 351


>gi|145612393|ref|XP_367174.2| hypothetical protein MGG_07099 [Magnaporthe oryzae 70-15]
 gi|145019567|gb|EDK03795.1| hypothetical protein MGG_07099 [Magnaporthe oryzae 70-15]
          Length = 617

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/412 (33%), Positives = 208/412 (50%), Gaps = 57/412 (13%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-----------RFSP 71
           +T VQ   L P L+ KD++  A+TG+GKT+AF + +   +L  +            RF+ 
Sbjct: 1   MTDVQSMTLAPALKGKDLVAQAKTGTGKTLAFLIPVIQKILDADPSLKEVSRGRPRRFAQ 60

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE--RRDLQNGAHIVV 129
             +  A+ I+PTRELA Q+G+E   L  + GV V   +GG    RE  RR    G H++V
Sbjct: 61  RQSIKAIIISPTRELAEQIGKEATRLCQRNGVTVQTAVGGTG-KRESLRRIHMEGCHLLV 119

Query: 130 GTPGRLCDHIRGK--GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----RRML 183
           GTPGRL D +  +  G++ S+++A+VLDEAD MLD+GF +++  I+D  P +    R+ L
Sbjct: 120 GTPGRLNDLLSDELSGIDASNVQALVLDEADRMLDVGFENELRSIVDMLPDRQQVPRQTL 179

Query: 184 MFSATISPAITTLAKNY----QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----AI 235
           +FSAT+   +  LA+ Y      + V+   A E + H  +     +V  S  +N    A+
Sbjct: 180 LFSATLPKNVVGLARWYVDKQNFEFVQTVRADEIQTHERVP--QFIVPTSSFENLLPAAL 237

Query: 236 VNILR-YHGAKN--------AIVFCSTRASVSRFTKVLAE------HLFQVVALSGELSQ 280
             +LR    AKN        AIVF      V+   ++  E       L +V  +  +LSQ
Sbjct: 238 ELMLREIRAAKNDPSQPPFKAIVFFPFTNMVAMAGELFRELAVQIPDLPEVFHIHAQLSQ 297

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+ A    R  ++ + I+TDV ARG+D P++  VI   L  + E  +HR GRT RAG+
Sbjct: 298 NQRTKAADYFRKSKSGILISTDVTARGMDFPNVTHVIQVGLPPDQEQYIHRLGRTARAGK 357

Query: 341 KGMSVFVIPQNMQRRAERLF------REANVSVVWEPAP------SVEAIRE 380
            G     +P    R A  +       R +++ V   P P      + EA RE
Sbjct: 358 DGQGWLFVPHYDLRDARYMLGDLPIKRNSDIKVAEFPVPPRSLDEAPEAYRE 409


>gi|261204964|ref|XP_002627219.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239592278|gb|EEQ74859.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis SLH14081]
 gi|239611568|gb|EEQ88555.1| eukaryotic initiation factor 4A [Ajellomyces dermatitidis ER-3]
 gi|327348420|gb|EGE77277.1| ATP-dependent RNA helicase eIF4A [Ajellomyces dermatitidis ATCC
           18188]
          Length = 398

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQEGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   HLK  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IERRVLKTDHLKMFVLDEADEMLSHGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ QQ+R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQQQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 177/338 (52%), Gaps = 11/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP----ASA 74
           GY   T +Q   +   +  +D++  AQTGSGKT AF L +   +LA     S      + 
Sbjct: 290 GYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPILHGILASGGGNSGSMSSTAE 349

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA+Q+  E       + V   VC GG S++ + R LQNG  ++V TPGR
Sbjct: 350 PSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASMNSQYRQLQNGCAVLVATPGR 409

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATIS 190
           L D +    ++ S ++ +VLDEAD MLD+GF  DIE I++        +R+ L+FSAT  
Sbjct: 410 LNDFVTRGRVSFSSVRYLVLDEADRMLDMGFIGDIEKIVNHQTMPAVGQRQTLLFSATFP 469

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247
             I TLA N+ ++ V   + +    ++D+    + V    +   +++ +     +G    
Sbjct: 470 EEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQKREVLMSKIEEFMANGDNKV 529

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+ +      +L+       ++ G+  Q +R  AL   + G   + +AT VAARG
Sbjct: 530 LIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEALAQFKAGIRSILVATAVAARG 589

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  +  VI+ +L    +  +HR GRTGR G KG +V
Sbjct: 590 LDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAV 627


>gi|157368407|ref|YP_001476396.1| ATP-dependent RNA helicase RhlB [Serratia proteamaculans 568]
 gi|189040037|sp|A8G828|RHLB_SERP5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157320171|gb|ABV39268.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 428

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 183/341 (53%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A+ 
Sbjct: 19  LVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQ 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  DR--KINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|41327779|ref|NP_065987.1| ATP-dependent RNA helicase DDX55 [Homo sapiens]
 gi|296439376|sp|Q8NHQ9|DDX55_HUMAN RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
           box protein 55
 gi|119618827|gb|EAW98421.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, isoform CRA_c [Homo
           sapiens]
 gi|119618828|gb|EAW98422.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, isoform CRA_c [Homo
           sapiens]
          Length = 600

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|16803490|ref|NP_464975.1| hypothetical protein lmo1450 [Listeria monocytogenes EGD-e]
 gi|47095401|ref|ZP_00233011.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964403|ref|YP_002350081.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|224499698|ref|ZP_03668047.1| dead/deah box ATP dependent helicase [Listeria monocytogenes
           Finland 1988]
 gi|224501609|ref|ZP_03669916.1| dead/deah box ATP dependent helicase [Listeria monocytogenes FSL
           R2-561]
 gi|226224051|ref|YP_002758158.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes Clip81459]
 gi|254827738|ref|ZP_05232425.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829791|ref|ZP_05234446.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes 10403S]
 gi|254898384|ref|ZP_05258308.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes J0161]
 gi|254912124|ref|ZP_05262136.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936452|ref|ZP_05268149.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801837|ref|YP_003413702.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284994979|ref|YP_003416747.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290894213|ref|ZP_06557182.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|16410879|emb|CAC99528.1| lmo1450 [Listeria monocytogenes EGD-e]
 gi|47016222|gb|EAL07145.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333673|gb|ACK39467.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|225876513|emb|CAS05222.1| Putative ATP-dependent RNA helicase, DEAD-box family (deaD)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258600117|gb|EEW13442.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609044|gb|EEW21652.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057399|gb|ADB68340.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284060446|gb|ADB71385.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290556210|gb|EFD89755.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590095|gb|EFF98429.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307571032|emb|CAR84211.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes L99]
          Length = 435

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
          Length = 482

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +    ++L +
Sbjct: 115 NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSI----SILQQ 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 171 ID--TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 228

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 229 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 288

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  + K++ ++ VR+ +  E      I    V V   D +   + ++      
Sbjct: 289 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 348

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 349 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 408

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 409 ARGIDVQQVSLVINYDLPSNRENYIH 434


>gi|156844392|ref|XP_001645259.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160395530|sp|A7TK55|IF4A_VANPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|156115918|gb|EDO17401.1| hypothetical protein Kpol_1060p58 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 396

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 171/320 (53%), Gaps = 22/320 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P + E DVL  AQ+G+GKT  F +A     L   D  S   AP AL
Sbjct: 42  GFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAA----LQRID--SSIKAPQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     V V  CIGG S   +   L++ A IVVGTPGR+ D+
Sbjct: 96  ILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDTEGLKD-AQIVVGTPGRVSDN 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+       ++K  +LDEADEML  GFR+ I  I    P   ++++ SAT+   +  +  
Sbjct: 155 IQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTTQVVLLSATLPGDVLEVTT 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLV--------ALSDRDNAIVNILRYHGAKNAIVF 250
            + ++ +R+ +  +      I    + V         LSD  ++I           A++F
Sbjct: 215 KFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDSI-------SVTQAVIF 267

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+TR  V   T+ L E  F V ++  +L QQER   ++  R G +R+ I+TD+ ARGID+
Sbjct: 268 CNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDV 327

Query: 311 PDLELVIHAELSSNPENLLH 330
             + LVI+ +L +N EN +H
Sbjct: 328 QQVSLVINYDLPTNKENYIH 347


>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           + + + +A++E GY   T++Q   +   L+ +D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILHKLQGRE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA+QV  ++      TG+      GGV    +++ L  G 
Sbjct: 68  TQRKKRIRA---LILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRLIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D    + +    ++ VVLDEAD MLD+GF D I  I+D  P+  + L+F
Sbjct: 125 DVLVATPGRLLDMYGQRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDAQYLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    D   ++IA+     S+I+   + V    +   + +++  +   
Sbjct: 185 SATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHLITENNWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +      A     SQ  R   L+  + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+ +L  V++ +L    +  +HR GRTGRA  KG ++ FV   N +
Sbjct: 305 RGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFK 353


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|114682563|ref|XP_001166284.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 2 [Pan
           troglodytes]
          Length = 745

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 173 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 230

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 231 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 287

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 288 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 347

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 348 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 403

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 404 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 463

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 464 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 523

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 524 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 572


>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
 gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
          Length = 649

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 169/331 (51%), Gaps = 3/331 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + +   P   P+ L 
Sbjct: 312 YTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQRE-LRPGDGPIGLI 370

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL++Q+  E +       + V  C GG S   + + L+ G  IVV TPGR+ D +
Sbjct: 371 LAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCEIVVATPGRMIDMV 430

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 431 KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARD 490

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
              D VR+     N  + DI     +    L   +  + +++++      +VF + +A  
Sbjct: 491 ILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSEGGVLVFVTKKADA 550

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +  L       + L G++ Q +R+  +   +     + +ATDVAARG+D+P +  VI
Sbjct: 551 ETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDILVATDVAARGLDIPHIRNVI 610

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +++ + +   HR GRTGRAG KG +  ++
Sbjct: 611 NYDIARDIDTHTHRIGRTGRAGEKGNAYTLV 641


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 181/346 (52%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A   +   +   +   +
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHAD--SNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 437

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   +  
Sbjct: 19  LVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNHLL---ETA 75

Query: 70  SPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +PA    + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAVLDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+     +P +R  L
Sbjct: 136 DILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPNERLSL 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSI 357


>gi|169869158|ref|XP_001841147.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
 gi|116497789|gb|EAU80684.1| ATP-dependent RNA helicase eIF4A [Coprinopsis cinerea okayama7#130]
          Length = 397

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L              AL
Sbjct: 43  GFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQQLDM------SIKGTQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     +    C+GG +V  +   LQ G H+VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQEGVHVVVGTPGRVYDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +     H+K   LDEADEML  GF+D I  +    P+  ++++ SAT+   +  + K
Sbjct: 157 INRRAFRTDHIKIFCLDEADEMLSRGFKDQIYDVFQLLPQDTQVVLLSATMPAEVLEVTK 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 277 DWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 337 NYDLPTNRENYIH 349


>gi|114682559|ref|XP_001166388.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 3 [Pan
           troglodytes]
          Length = 791

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 454

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 574

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 623


>gi|302848249|ref|XP_002955657.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
 gi|300259066|gb|EFJ43297.1| hypothetical protein VOLCADRAFT_66087 [Volvox carteri f.
           nagariensis]
          Length = 727

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 188/345 (54%), Gaps = 15/345 (4%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APL 76
           +L  +Q   L P L   DV+  A+TG GKT+AF L +   +LAE  +   A       P+
Sbjct: 124 SLFPIQAMTLEPGLAGVDVVGRARTGCGKTLAFVLPIVERILAEQRKGVAAGRVAGRLPI 183

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRL 135
            + +APTRELA QV +E+     K   +  +C+ GG     +   L  G  +VVGTPGR+
Sbjct: 184 CIVLAPTRELAKQV-QEVFANVGKAANLYTLCVYGGTPYDGQETALSKGVDVVVGTPGRI 242

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPA 192
            D +    L +S+++  VLDE D+ML +GF +D+E IL   +  P   + L+FSAT+   
Sbjct: 243 KDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKAGEQQPDSIQTLLFSATLPKW 302

Query: 193 ITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN-AI 248
           +  L + + +   R +++  +++  + +  R +++  S   R   + +++  +GA    I
Sbjct: 303 VKGLTQRFLRPGHRFMDLVGDDKMQAAVTVRHLMLPCSYPQRAGLLKDLITSYGAGGRTI 362

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++   +  + VL + L    AL G+L+Q  R   L   R GR  V IATDVAARG+
Sbjct: 363 IFTDSKKEAAELSVVLGDSL-GAQALHGDLAQSMREQTLDGFRKGRFPVLIATDVAARGL 421

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+  +ELV+  +  ++ E  +HRSGRTGRAG  G  + ++ + M+
Sbjct: 422 DVSGIELVLMVDPPADWETYIHRSGRTGRAGSSGTCITLVTKKME 466


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 192/363 (52%), Gaps = 13/363 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 248 LPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 306

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL  G
Sbjct: 307 PPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRG 366

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 367 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 426

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V +L    
Sbjct: 427 WSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVRLLNEIA 486

Query: 241 --YHGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              + A N    I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++
Sbjct: 487 PTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKS 546

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++
Sbjct: 547 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 606

Query: 355 RAE 357
             E
Sbjct: 607 ARE 609


>gi|320159302|ref|YP_004191680.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934614|gb|ADV89477.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 412

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 170/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L    ++        AL + PT
Sbjct: 24  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQE-------ALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   +  +    G+      GGV   ++ + L    HI+V T GRL D +   G
Sbjct: 77  RELATQVSEAINQVGQSIGLNAVCLCGGVDKEQQLQALATNPHILVATTGRLVD-LANNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK   + 
Sbjct: 136 LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISSQRQTAMFSATFSDELKGKAKLLMQA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +     K 
Sbjct: 196 PKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGEQGVALSLV 340


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T +QE  +   L  KD+L  AQTG+GKT A+ L + S L   +D   P 
Sbjct: 14  DALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIMSML---DDGGFPH 70

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHR---ERRDLQNGAHIV 128
            A   + ++PTRELA Q+ + ++   Y    V      GG   +R   E + L+ GA I+
Sbjct: 71  DAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQEIKSLRLGADII 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI+   +++S +   VLDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQLPPTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LAK   K+ V + +A  ++    I  +A L     +   + +I +       I
Sbjct: 191 MPPKIEQLAKTLLKNPVEIKLAV-SKPAEKIAQKAYLCYEPQKLKVLQDIFKAGSLNRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +  V    + L         +  +LSQ+ER   +   + G   V +ATD+ +RGI
Sbjct: 250 IFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKFKSGATDVLVATDILSRGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I
Sbjct: 310 DIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLI 349


>gi|206579456|ref|YP_002237080.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288934043|ref|YP_003438102.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568514|gb|ACI10290.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288888772|gb|ADC57090.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 443

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 180/336 (53%), Gaps = 8/336 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P 
Sbjct: 21  DKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPPR 78

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL 
Sbjct: 79  ILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLL 138

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195
            +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI  
Sbjct: 139 QYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIKD 198

Query: 196 LAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            A+   ++ V V+     R+   I    YRA    +  +   ++++L+   A  +IVF  
Sbjct: 199 FAERLLEEPVEVSATPSTRERKKIHQWYYRAD--DIEHKTALLIHLLKQPEATRSIVFVR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD
Sbjct: 257 KRERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPD 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V + ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 317 VSHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLV 352


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|20987604|gb|AAH30020.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Homo sapiens]
          Length = 600

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDLFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKTLEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|153939716|ref|YP_001391033.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 421

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+  V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDVTHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 194/364 (53%), Gaps = 7/364 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      A 
Sbjct: 368 ALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VGEAE 426

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            PLA+ + PTRELA+Q+ +E +  ++K+  +  VC+ GG  +  +  +L+ GA I+V TP
Sbjct: 427 GPLAVIMTPTRELALQITKECK-KFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTP 485

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VV+DEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 486 GRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATF 545

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-I 248
              +  LA+      V V +   +   SD++   +++    +   ++ IL ++  K + I
Sbjct: 546 PRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVI 605

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +       K L +  +  ++L G + Q +R + +   ++G  R+ +AT VAARG+
Sbjct: 606 IFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGL 665

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++    ++ E+ +HR+GRTGRA  KG +   I +   R +  + +   +S  
Sbjct: 666 DVKQLILVVNYSCPNHYEDYVHRAGRTGRARNKGYAYTFITEGQARYSGDILKALELSGS 725

Query: 369 WEPA 372
             PA
Sbjct: 726 SVPA 729


>gi|302502754|ref|XP_003013338.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
 gi|291176901|gb|EFE32698.1| hypothetical protein ARB_00523 [Arthroderma benhamiae CBS 112371]
          Length = 455

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|156844604|ref|XP_001645364.1| hypothetical protein Kpol_1058p43 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358677|sp|A7TJS7|SPB4_VANPO RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|156116025|gb|EDO17506.1| hypothetical protein Kpol_1058p43 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 607

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 20/359 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDR 68
           I  A+   G+ N+T VQ A +    R KDV+V + TGSGKTV+F + +   ++ E  N  
Sbjct: 18  IRSAVDVMGFENMTPVQAATIPLFARNKDVVVDSVTGSGKTVSFVIPIFEKIVQEEANTT 77

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL---YAKTGVVV-AVCIGGVSVHRERRD---- 120
                   +L ++PT+ELA Q+    E     Y +    + +  + G +V   R D    
Sbjct: 78  KMKKGHFHSLIVSPTKELAKQIHSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDF 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++N   I++GTPGR+ D ++   +  S    V+LDEAD +LD+ F  D+E I++  PK+R
Sbjct: 138 MENKPQILIGTPGRILDFLKIPSVKTSMCSMVILDEADRLLDVSFLKDMENIMNILPKQR 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSATI+ A   + K   ++ V+V + S+++  S +     +V    +   +++I+ 
Sbjct: 198 RTGLFSATITSAGDNIFKTGLRNPVKVTVNSKSQAPSSLKIDCAVVETDKKLEQVISIIN 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL--------FQVVALSGELSQQERSNALQMMRD 292
            +  K  I +  T  SV+ F   +   L         Q+ +L G+L    R   L+   +
Sbjct: 258 NYKFKKCIAYFPTCHSVTYFYSFMQYLLKKGIIKEEIQIYSLHGKLQTSARIKTLETFTE 317

Query: 293 GRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
             +  V + TDVAARGID+PD++LV+  +  ++PE  LHR GRTGRA + G ++ F+ P
Sbjct: 318 TISNAVLLTTDVAARGIDIPDVDLVLQLDPPTDPEVFLHRCGRTGRANKLGKAITFLTP 376


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/379 (30%), Positives = 198/379 (52%), Gaps = 22/379 (5%)

Query: 1   MKIFENIPQVIGEALSER--------GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           + IFE  P     AL ER         +V  T VQ A +   L+ +D+ V+AQTGSGKT 
Sbjct: 20  LHIFEVAPVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTA 79

Query: 53  AFGLALASTLLAENDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF L + + L+       PA   ++   L + PTRELA Q  +E+E     T +   +  
Sbjct: 80  AFVLPILNRLIG------PAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLIT 133

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG     +   L+    I++GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D+
Sbjct: 134 GGEDFKVQAAMLRKVPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDV 193

Query: 170 EFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           + ++D  P +++ ++FSAT     +  +      +   + + S ++ +     + +    
Sbjct: 194 QRLVDECPNRQQTMLFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADH 253

Query: 229 SDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +     IVN +L     + AIVF +TRA   R    L    ++   L GE  Q++R  A+
Sbjct: 254 NQHKEQIVNWLLANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAI 313

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             ++ G  ++ +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +
Sbjct: 314 DRLKQGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISL 373

Query: 348 IPQ---NMQRRAERLFREA 363
           I     N+    ER  +++
Sbjct: 374 ICHGDWNLMSSIERYLKQS 392


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 189/357 (52%), Gaps = 11/357 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 292 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 351

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 352 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 411

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 412 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFS 470

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    + + ++ +LR  G +
Sbjct: 471 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQYSKRDQLLELLRATGNE 530

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G   V +AT VAA
Sbjct: 531 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAA 590

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V F  P++    A  L +
Sbjct: 591 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVK 647


>gi|302667761|ref|XP_003025461.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
 gi|291189571|gb|EFE44850.1| hypothetical protein TRV_00401 [Trichophyton verrucosum HKI 0517]
          Length = 455

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|269959250|ref|ZP_06173634.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269835952|gb|EEZ90027.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 436

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 167/325 (51%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDVL  A TGSGKT+A+GL L        ++ S      AL + PT
Sbjct: 48  TDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL-------EKLSVNPEQKALILVPT 100

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   +  +    G+      GGV    + + L +  HI+V T GRL D +   G
Sbjct: 101 RELATQVSEAINQVGQAIGLNAVCLCGGVDKETQLQALASDPHILVATTGRLVD-LANNG 159

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK     
Sbjct: 160 LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISNQRQTAMFSATFSDELKGKAKQLMHA 219

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K 
Sbjct: 220 PKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNTWTQVLVFIGAKENADGLAKK 279

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 280 LNKAGITTNALHGNKSQVEREEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 339

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 340 HAETYVHRVGRTARAGEQGVAMSLV 364


>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
           troglodytes]
          Length = 796

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 454

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 574

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 623


>gi|168068661|ref|XP_001786160.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662029|gb|EDQ49028.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 377

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 156/278 (56%), Gaps = 10/278 (3%)

Query: 75  PLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           PLAL +APTRELA Q+ +E++ +  +  G   ++ +GG +++ +R +L+ G  IVV TPG
Sbjct: 4   PLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQRSELRAGVEIVVATPG 63

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  DH++    ++S +  VVLDEAD MLD+GF   I  ++ S PKK + L+FSAT+   I
Sbjct: 64  RFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLPKKHQTLLFSATMPEEI 123

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN------- 246
             LA+ Y    VRV +   +   +++      +   ++ ++++ +L    +++       
Sbjct: 124 EALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLALLVDEHSQSLDSNQPP 183

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF   +A     T  L E   +  AL G  SQ ER  AL+  R G   + +ATDVA
Sbjct: 184 PLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALRDFRKGTTNILVATDVA 243

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G
Sbjct: 244 SRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASG 281


>gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum]
          Length = 419

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    +L +
Sbjct: 52  NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSIS----ILQQ 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 108 ID--TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 166 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  + K++ ++ VR+ +  E      I    V V   D +   + ++      
Sbjct: 226 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 285

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 286 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 345

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 346 ARGIDVQQVSLVINYDLPSNRENYIH 371


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/383 (33%), Positives = 202/383 (52%), Gaps = 30/383 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           +I E + + GY   T VQ+  +   L  +D++  AQTGSGKT AF + + + ++   +  
Sbjct: 63  LIQENIKKSGYTKPTPVQKYSIPSLLSCRDLMSCAQTGSGKTAAFLVPVINHIIRNESTT 122

Query: 67  DRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER- 118
            R     +       P+ L ++PTRELA+Q  +E      +T V+ AV  GG   +R++ 
Sbjct: 123 MRMPQVMSTSRRTVFPVVLILSPTRELAMQTHKEALKFAYRTNVISAVLYGGRENYRDQV 182

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SS 176
           + L  G H+++ TPGRL D +    +++   + +VLDEAD MLD+GF   I  I++  S 
Sbjct: 183 QKLTLGCHLLIATPGRLLDVMSQNVVSLHDCRFLVLDEADRMLDMGFEPQIRQIVECHSM 242

Query: 177 PKK--RRMLMFSATISPAITTLAK-----NYQKDAV-RVNIASENRQHSDIDYRAVLVAL 228
           PKK  R   MFSAT    I  LA+     NY   AV RV   SEN     I  + + V  
Sbjct: 243 PKKGQRVTAMFSATFPKEIQILAQDFLMANYVFLAVGRVGSTSEN-----IVQKIIWVEE 297

Query: 229 SDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            D+   ++ +L     +  A+VF  T+   +     L  + + V+ + G+L Q ER   L
Sbjct: 298 HDKKRLLMELLDIDVNRGLALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYERERHL 357

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +M R G+  + +AT VAARG+D+P+++ VI+ +L ++ +  +HR GRTGRAG  G++   
Sbjct: 358 EMFRSGQTNILVATAVAARGLDIPNVKHVINFDLPTDIDEYVHRIGRTGRAGNIGLATSF 417

Query: 348 IP---QNMQRRAERLFREANVSV 367
                +N+ R    L  E+N  V
Sbjct: 418 FTDRNRNISRDLMDLLVESNQEV 440


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 183/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 192/355 (54%), Gaps = 13/355 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   + +         
Sbjct: 1   MKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGKQPPILRGEG 59

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
           P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G  +++ TP
Sbjct: 60  PIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERGVEVIIATP 119

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  +  N++    +VLDEAD MLD+GF   I  I++     R+++M+SAT    
Sbjct: 120 GRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKE 179

Query: 193 ITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKN 246
           +  LA ++  D +++NI S N   + +I     +    ++   +V +L+      + A N
Sbjct: 180 VQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNNSANN 239

Query: 247 A---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++ + IATDV
Sbjct: 240 GSKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDV 299

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           A+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++  E
Sbjct: 300 ASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARE 354


>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
 gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
          Length = 709

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 191/353 (54%), Gaps = 11/353 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 292 QCFAEYPDLLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 350

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERR 119
           T      R +   A + L +APTRELA+Q+  E++    +   + AVC+ GG     +  
Sbjct: 351 TEYQSTPRGTRGGANV-LVLAPTRELALQIEMEVKKYSFRD--MKAVCVYGGGDRRMQIS 407

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPK 178
           DL+ GA I++ TPGRL D ++   +++S +  +VLDEAD MLD+GF   I + +LD  P 
Sbjct: 408 DLERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 467

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
            R+ +M SAT  P +  LA++Y K+ ++V + S +    HS      +L    ++ N I 
Sbjct: 468 -RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDKEKFNTIK 526

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +R        I+FC  +A     +  L    F    + G   Q +R  A+  ++ G  
Sbjct: 527 SFVRNMSNTDKIIIFCGRKARADDLSSELTLDGFMTQCIHGNRDQIDREQAIADIKSGAV 586

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I
Sbjct: 587 HILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFI 639


>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 439

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 180/341 (52%), Gaps = 12/341 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LASTLLAE 65
            I  AL E GY   T +Q+  +   L+ K++L +AQTG+GKT +F L     LA T +  
Sbjct: 11  TIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPILERLADTEIQR 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R        AL + PTRELAVQV   +   YAK   + ++ I GGV    +++ L +G
Sbjct: 71  AKRIR------ALILTPTRELAVQVHANVVQ-YAKHLPLTSIAIYGGVDEKPQKQALIDG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D  P +R+ L+
Sbjct: 124 VDILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIDKLPSERQSLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LAK   K  V +++ ++      I+     V    +   + ++++    
Sbjct: 184 FSATLSNQVRALAKTAIKRPVEISVIADRDSAPKIEQWLTTVDKDKKSALLSHLIKTEEW 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F  T+   ++    L +       +    SQ  R   L   + G  +  +AT +A
Sbjct: 244 NQALIFIETKQGAAKLVSQLEKRDIAAECIHSGRSQPVREQILADFKSGNIKYLVATGIA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ DL  V++ +L    ++ +HR GRTGRAG  G+++
Sbjct: 304 ARGIDIDDLSRVVNYDLPYPADDYIHRIGRTGRAGAAGVAI 344


>gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 467

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 182/339 (53%), Gaps = 4/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+  +   A 
Sbjct: 15  AITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADMPKIR-AK 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
              AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V TP
Sbjct: 73  RVRALILTPTRELAVQVEDNIAK-YAKYLPLTSMAMYGGVDAAPQKQSLIEGVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+S  
Sbjct: 132 GRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFSATLSKQ 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + A++F  
Sbjct: 192 VRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALIFIQ 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+RGID+  
Sbjct: 252 TKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGIDIDA 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 312 LTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKD 350


>gi|121607326|ref|YP_995133.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551966|gb|ABM56115.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 609

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 196/392 (50%), Gaps = 61/392 (15%)

Query: 8   PQVIGEALSERGYVNLTSVQEAIL-------NPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           P+++  A+++ GY   T VQ   +       +   R  D++VS+QTGSGKT A+ L L  
Sbjct: 85  PELV-RAVADLGYTGPTIVQRKAIPLAMGAGHGATRFIDLMVSSQTGSGKTAAYLLPLLH 143

Query: 61  TLLAE------------------------------------NDRFSPASAPLALAIAPTR 84
           TL+ +                                    + R   A+ P AL + PTR
Sbjct: 144 TLIGQQAQVQAQERAALERAAADAATRDAPAPKRPKRKDPMHTRHFKAATPGALILCPTR 203

Query: 85  ELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           ELA QV  + ++      G+ VA  +GG+    +   LQN A +VV TPGRL D  R   
Sbjct: 204 ELAQQVAHDAIDLARHCRGLRVANVVGGMPYQMQIAKLQN-ASLVVATPGRLLDLQRSMQ 262

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     D
Sbjct: 263 IKLDKVQFLVVDEADRMLDLGFSDDLAEINQLTSQRQQTMMFSATFAPRIQQLALRVMHD 322

Query: 204 A----VRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYHGAKNAIVFCST 253
                 ++ I S   +H++I  R +L      DNA      + + LR      AIVF ST
Sbjct: 323 GGSSVQKLTIDSPQEKHANI--RQMLYWA---DNAQHKRKLLDHWLRDTQINQAIVFAST 377

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +         L +  F  VAL G L+Q  R+  L  +RDG+ ++ +ATDVAARGID+P +
Sbjct: 378 QVECDALAGELQQAGFSAVALHGALNQGLRNRRLTALRDGQVQILVATDVAARGIDVPTI 437

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V +  L    E+  HR GRTGRAGR G+++
Sbjct: 438 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAI 469


>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 809

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 188/350 (53%), Gaps = 6/350 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A +  GY   T +Q A++   L  +D+   A TGSGKT AF L L   +L  
Sbjct: 184 NLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLERMLHR 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A+A   L + PTRELAVQV +    L   T +  A+ +GG+S + +  +L+   
Sbjct: 244 GAR--AAAATHVLVLVPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELRTRP 301

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DH+R    + +  L A+VLDEAD +L++GF ++I  I+   P +R+ ++
Sbjct: 302 EIVVATPGRLIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQTML 361

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT++  +  LA+   K   R++   I +     ++   R    A S ++  ++ ++  
Sbjct: 362 FSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMALVNR 421

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K +IVF  T+    R   V+         L G+LSQ +R  AL+  R G A   +AT
Sbjct: 422 TFTKKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHLVAT 481

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DVAARG+D+  ++ VI  +      + LHR GRT RAG++G ++  + ++
Sbjct: 482 DVAARGLDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEES 531


>gi|146197867|dbj|BAF57644.1| eIF4A isoform 1A protein [Dugesia japonica]
          Length = 389

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 166/315 (52%), Gaps = 11/315 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DV+  AQ+G+GKT  F +A+   +    +         AL
Sbjct: 35  GFEKPSAIQQRAVLPAIEGHDVIAQAQSGTGKTATFSVAILQRIDVTKNEVQ------AL 88

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    G     CIGG  V  +  +L+NG H++VGTPGR+ D 
Sbjct: 89  VLAPTRELAKQIHKVIIALGDYMGAKSYACIGGTRVQEDVGNLENGVHVIVGTPGRVNDM 148

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L  + +K  VLDEADEML  GF++ I  ++       ++++ SAT+ P +  + +
Sbjct: 149 IERGNLKTNSIKMFVLDEADEMLSRGFKEQIHSVIQFIEHDTQIVLLSATMPPDVLEVTR 208

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            + +  V++ +  E      I  R   V +S+ D     + ++        A++FC+TR 
Sbjct: 209 KFMRSPVKILVKKEELTLEGI--RQFYVNVSEEDYKFETLTDLYETLTITQAVIFCNTRR 266

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ L    F V ++ G++ Q  R   ++  R G +R+ I TD+ ARGID+  + L
Sbjct: 267 KVDYLTESLKAKPFIVSSMHGDMQQDMRDQIMKEFRSGSSRILITTDLLARGIDVQQVSL 326

Query: 316 VIHAELSSNPENLLH 330
           VI+ +L SN EN +H
Sbjct: 327 VINYDLPSNRENYIH 341


>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
 gi|74695973|sp|Q75F95|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
          Length = 734

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 193/358 (53%), Gaps = 24/358 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GY   + +Q A +   L  KDV+  A TGSGKT AF + +   LL     + PA
Sbjct: 232 KGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLL-----YKPA 286

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   L + PTRELA+QV   G++L      +G+   + +GG+++ ++ + L+    I
Sbjct: 287 KIASTRVLVLTPTRELAIQVADVGKKLGKFV--SGLTFGLAVGGLNLRQQEQALKLRPDI 344

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR+ DHIR     ++  ++ +V+DEAD ML+ GF+D++  I+   P KR+ L+FS
Sbjct: 345 VIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQTLLFS 404

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH---- 242
           AT++  I  L     K  VR+ I    +  + +      V L  R++ +   L YH    
Sbjct: 405 ATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQE--FVRLRKREH-LKPALLYHLLRK 461

Query: 243 ----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G K  +VF + +    R   +L     +   L G L+Q++R  ++   +     V 
Sbjct: 462 LDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVL 521

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + TD+A+RG+D+P +E+VI+ ++    E  LHR GRT RAGR+G SV ++ ++ Q R+
Sbjct: 522 VCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQERS 579


>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
 gi|29427946|sp|Q96GQ7|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|55663788|emb|CAH70236.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|56203613|emb|CAI22427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
           sapiens]
 gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 796

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 454

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 574

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 623


>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
 gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 765

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 250

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 251 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 307

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 423

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 424 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 483

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 484 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 543

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 544 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592


>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
 gi|142980808|sp|A1A4H6|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
 gi|296481114|gb|DAA23229.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
          Length = 765

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 250

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 251 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 307

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 423

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 424 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 483

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 484 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 543

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 544 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 5/363 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 360 SLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LEEGE 418

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 419 GPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 478

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 479 RMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSATFP 538

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
            A+  LA+      + V +   +   SD++   +++    +   ++ +L ++  K A I+
Sbjct: 539 RAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLELLGHYQEKGAVII 598

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 599 FVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVCKLLVATSVAARGLD 658

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 659 VKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARYAGDIIKALELSGTA 718

Query: 370 EPA 372
            PA
Sbjct: 719 VPA 721


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 178/326 (54%), Gaps = 6/326 (1%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           VQ+  + P ++ +DV+V +Q+G+GKT  F +          +R      P AL ++PTRE
Sbjct: 49  VQKRAIVPIIKGRDVVVQSQSGTGKTCVFTVGALQLCNRTTERL-----PQALILSPTRE 103

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA Q  +    L     + V  C+GG  ++ + + LQ+G  IV GTPGR+   I    L 
Sbjct: 104 LAEQSQKVCSALGEYLDINVYCCVGGRKLNDDIKALQSGVTIVSGTPGRVIHMIEQGYLI 163

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
              ++ ++LDEADEMLD GF+  +  I    P + ++++ SAT+   I  + +   KD +
Sbjct: 164 TRRIRLLILDEADEMLDFGFKRQVYDIYKYLPPRIQIILVSATLPEEIIEITEKIMKDPL 223

Query: 206 RVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           ++ +  +N     I    + V     + + + ++        +++FC+ +A V   +  +
Sbjct: 224 KILVKRDNLTLEGIRQFYIYVEQEQWKFDTLCDLYDTLTITQSVIFCNKKAKVEWLSSKM 283

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            E+ F V  + G+LSQ++R   L+  R G+ RV IATD+  RGID+  + LVI+ ++ +N
Sbjct: 284 IENHFTVSFVHGDLSQKDREQILREFRQGKTRVLIATDLWGRGIDIQQINLVINYDIPTN 343

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQ 350
            E  +HR GR+GR GRKG+++ ++ +
Sbjct: 344 KELYIHRIGRSGRFGRKGVAINLVKE 369


>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Pongo
           abelii]
          Length = 765

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 250

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 251 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 307

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 423

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 424 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 483

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 484 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 543

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 544 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592


>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
 gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
          Length = 403

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 12/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+Q+  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           SAT+    +     +   D   ++  S  R+   I   A     +D     + +L++   
Sbjct: 187 SATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKI---AQWYHRADDAEHKLELLKHIIT 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +AT
Sbjct: 244 QQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAER 358
           DVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R
Sbjct: 304 DVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVAR 363

Query: 359 LFRE 362
             +E
Sbjct: 364 YVKE 367


>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
           mulatta]
          Length = 763

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 248

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 249 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 305

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 306 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 365

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 366 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 421

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 422 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 481

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 482 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 541

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 542 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 590


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 189/365 (51%), Gaps = 17/365 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ +    S  +      
Sbjct: 193 YERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNNMIKQGPGDSICATIDSNR 252

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL +APTRELA Q+  +      ++ +   V  GG  +  +  +L  G +++V 
Sbjct: 253 RKQFPVALILAPTRELASQIFDDARKFSYRSSIRPCVLYGGADMRTQLMELSKGCNVLVA 312

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFS 186
           TPGRL D +    + + + + +VLDEAD MLD+GF   I  I+  D+ P   +R+ LMFS
Sbjct: 313 TPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQDALPPSGERQTLMFS 372

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LAK++    + + +        +I    + V  + + +A++++L    A  
Sbjct: 373 ATFPHEIQILAKDFLSSYIFLTVGRVGSTSENITQTILWVEENAKRDALIDLLANSEAGT 432

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L    FQV ++ G+ +Q++R  AL   R GR  V +AT VAA
Sbjct: 433 LTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFRSGRTPVLVATAVAA 492

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++        +N+ R    L  E
Sbjct: 493 RGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNRNLARGLVELLEE 552

Query: 363 ANVSV 367
           AN +V
Sbjct: 553 ANQAV 557


>gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
          Length = 397

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           + + + +A++E GY   T++Q   +   L+ +D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILHKLQGRE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA+QV  ++      TG+      GGV    +++ L  G 
Sbjct: 68  TQRKKRIRA---LILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRLIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D    + +    ++ VVLDEAD MLD+GF D I  I+D  P+  + L+F
Sbjct: 125 DVLVATPGRLLDMYGQRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDAQYLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    D   ++IA+     S+I+   + V    +   + +++  +   
Sbjct: 185 SATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHLITENNWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +      A     SQ  R   L+  + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+ +L  V++ +L    +  +HR GRTGRA  KG ++ FV   N +
Sbjct: 305 RGIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFK 353


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 27/390 (6%)

Query: 5   ENIPQ------------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +N+PQ            ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT 
Sbjct: 187 DNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTA 246

Query: 53  AFGLALASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF + + +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  
Sbjct: 247 AFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAY 306

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG SV  +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   I
Sbjct: 307 GGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSI 366

Query: 170 EFILDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           E ++D        +R+ LMFSAT    +  LA+ +  + + + +       SD++     
Sbjct: 367 EKMVDHETMVPLGERQTLMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDVEQNFCE 426

Query: 226 VALSDRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           VA + + + +  IL            +VF   +         L+E+ +   ++ G+  Q+
Sbjct: 427 VARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQR 486

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +
Sbjct: 487 QREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNR 546

Query: 342 G--MSVFVIPQNMQRRAE--RLFREANVSV 367
           G   S F   ++   R +  R+ ++AN SV
Sbjct: 547 GRATSFFDPEEDAPLRGDLVRILKQANQSV 576


>gi|15241726|ref|NP_201025.1| PRH75; ATP-dependent helicase/ DEAD/H-box RNA helicase binding
           [Arabidopsis thaliana]
 gi|108861902|sp|Q39189|RH7_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 7
 gi|8809632|dbj|BAA97183.1| RNA helicase [Arabidopsis thaliana]
 gi|15810145|gb|AAL07216.1| putative RNA helicase [Arabidopsis thaliana]
 gi|30793911|gb|AAP40408.1| putative DEAD/DEAH box RNA helicase PRH75 [Arabidopsis thaliana]
 gi|332010196|gb|AED97579.1| DEAD-box ATP-dependent RNA helicase 7 [Arabidopsis thaliana]
          Length = 671

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 197/378 (52%), Gaps = 19/378 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDR- 68
           E L   G   L  +Q +  +  L   D++  A+TG GKT+AF L +  +L+   A++ R 
Sbjct: 109 EKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRK 168

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                +P  L + PTRELA QV  + +      G+      GG S   +   L+ G  IV
Sbjct: 169 MGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIV 228

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKRRMLM 184
           VGTPGR+ DHI  + L+ S+L+  VLDEADEML +GF +D+E IL    DS+  K + L+
Sbjct: 229 VGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDST--KVQTLL 286

Query: 185 FSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILR- 240
           FSAT+   +  ++  + ++D   +++   ++  +    R + +  +    A  I +I+  
Sbjct: 287 FSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISC 346

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      I+F  T+  VS  + +L        AL GE+ Q +R   L   R+G+    +A
Sbjct: 347 YSSGGQTIIFAETKVQVSELSGLLDGSR----ALHGEIPQSQREVTLAGFRNGKFATLVA 402

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+ D++L+I  E     E  +HRSGRTGRAG  G++V  +  + +    R+ 
Sbjct: 403 TNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAV-TLYDSRKSSVSRIE 461

Query: 361 REANVSVVWEPAPSVEAI 378
           +EA +      AP  + I
Sbjct: 462 KEAGIKFEHLAAPQPDEI 479


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 180/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALAS--------TLLAENDRFSPASA-PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S         +      FS     P  L +APTREL  
Sbjct: 206 RDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVS 265

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V  AV  GG  + ++ R+L  G  ++V TPGRL D +    +++++
Sbjct: 266 QIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLAN 325

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 326 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDY 385

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L    A   I+F  T+         L
Sbjct: 386 IFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFL 445

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 446 YDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSD 505

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 506 IDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIDLLSEANQEV 551


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 180/346 (52%), Gaps = 16/346 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALAS--------TLLAENDRFSPASA-PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S         +      FS     P  L +APTREL  
Sbjct: 175 RDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVS 234

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V  AV  GG  + ++ R+L  G  ++V TPGRL D +    +++++
Sbjct: 235 QIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLAN 294

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ KD 
Sbjct: 295 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDY 354

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L    A   I+F  T+         L
Sbjct: 355 IFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFL 414

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  VI+ +L S+
Sbjct: 415 YDQGFPATAIHGDRSQYEREKALAAFKSGAAPILVATAVAARGLDIPNVAHVINYDLPSD 474

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSV 367
            ++ +HR GRTGRAG  G++     +N +   +    L  EAN  V
Sbjct: 475 IDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIDLLSEANQEV 520


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 181/358 (50%), Gaps = 16/358 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           +P+ +   +    Y   T VQ+    I+N D   +D++  AQTGSGKT AF L + + L+
Sbjct: 238 LPETVLANVKRANYERPTPVQKYSIPIINAD---RDLMACAQTGSGKTAAFLLPVLTKLI 294

Query: 64  A---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               ++ +FS    P A+ + PTREL  Q+  E       T V   V  GG S++ + RD
Sbjct: 295 TNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQIRD 354

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----S 176
           LQ G HI++ TPGRL D I    + + H++ V+LDEAD MLD+GF  +I  +  S    S
Sbjct: 355 LQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGMPS 414

Query: 177 PKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              R  LMFSAT    I  LA ++ ++D + + +       +D+    + V   D+   +
Sbjct: 415 KSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRAKL 474

Query: 236 VNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           + ++          +VF  T+        +L++      ++ G+  QQER  AL+  +  
Sbjct: 475 LELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSA 534

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
              + IAT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +      N
Sbjct: 535 VCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDNN 592


>gi|332686449|ref|YP_004456223.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
 gi|332370458|dbj|BAK21414.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
          Length = 449

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 177/337 (52%), Gaps = 11/337 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL E+G+   T VQE ++    + K+V+  +QTGSGKT  F L L        ++  P 
Sbjct: 15  EALKEKGFQQPTQVQEKLIQMIQKGKNVIGQSQTGSGKTHTFLLPLL-------NKIDPT 67

Query: 73  SAPLALAIA-PTRELAVQVGREL--EWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIV 128
              + + I  P+RELA Q+ +       ++   + ++  IGG    R+   L+N    +V
Sbjct: 68  IDEVQVIITTPSRELANQIYQAAIQAAKFSSPEIHISNFIGGTDKQRQLIKLKNQQPQLV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D I  + L +    A V+DEAD  LD+GF +D++ I    PK  +ML+FSAT
Sbjct: 128 VGTPGRILDMINEQALKVHTAFAFVIDEADMTLDMGFLEDVDQIASRLPKNLQMLVFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +    K Y ++ V   I SE    S ID         D +  +  +L       AI
Sbjct: 188 IPEKLRPFLKKYLENPVIEEIKSETVIASTIDNWLFSTKGKDVNQLVYQLLTIGHPYLAI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+  V   T  L EH  +V  + G++S +ER   ++ +++   +  +ATD+AARGI
Sbjct: 248 IFANTKQRVDEITTYLKEHGLRVAKIHGDISPRERKRVMRQVQNLEYQYVVATDLAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  VI+ E+  + +  +HR GRTGR G KG ++
Sbjct: 308 DIEGVSEVINTEIPKDLDFFIHRVGRTGRNGLKGTAI 344


>gi|332018823|gb|EGI59382.1| Putative ATP-dependent RNA helicase DDX55-like protein [Acromyrmex
           echinatior]
          Length = 589

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 221/433 (51%), Gaps = 29/433 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+ N+T VQ A +   L  KDV   A TGSGKT+AF + L   L   N+++   
Sbjct: 19  KTLRQLGFFNMTPVQIACIPLLLNGKDVAAEAVTGSGKTLAFLIPLLEILQKRNEKWKTM 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGT 131
               A+ ++PTRELA+Q+   LE    +  ++  V  +GGV++ ++   L+ GA+I+V T
Sbjct: 79  EVG-AIIVSPTRELAIQISEILEEFLKRIPLLKQVLLVGGVTLQKDVEKLKKGANIIVAT 137

Query: 132 PGRLCDHIRGK---GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGRL D +      GL I  L+ +VLDEAD +LDLGF   ++ IL   P+ RR  +FSAT
Sbjct: 138 PGRLKDILSNYINLGLYIKSLEFLVLDEADRLLDLGFSATLDSILSYLPRLRRTGLFSAT 197

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--VLVALSDRDNAIVNILRYHGAKN 246
            +  +  L +   ++   + +  ++   + ++ +    +V    +   I++ +R  G K 
Sbjct: 198 QTKELEQLIRAGLRNPALIVVKEKSNVSTPVNLKNSFTIVQPEYKLPVIIDFIRSVGFKT 257

Query: 247 A-IVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             ++F  T A V  FT+V+   L    V+AL G++ + +R       R     + I TDV
Sbjct: 258 KYMIFLPTCACVDYFTRVIQTLLPSINVLALHGKM-KSKRYKVFDKFRYAENGILICTDV 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-----------VIPQNM 352
            ARGID+ +++ V+  +  S   + +HR GRT R G +G ++             I +N 
Sbjct: 317 MARGIDISEIDWVLQYDPPSTASSFVHRCGRTARIGNEGNALLFLLETESAYVDFIKRNQ 376

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLA 409
           +    ++ RE N   + E    +  +++RD  R++ D     F+  +Q   K   +++L 
Sbjct: 377 KVELRQMERELNEETIDECLQCMRRMQQRD--RLMFDKANRAFVSYVQAYNKHECNLILQ 434

Query: 410 KHDPE--KIAAGF 420
             D +  K+A GF
Sbjct: 435 LKDIDLGKLAMGF 447


>gi|221118846|ref|XP_002163229.1| PREDICTED: similar to Eukaryotic initiation factor 4A-II [Hydra
           magnipapillata]
          Length = 409

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A+   L   N  F+      AL
Sbjct: 55  GFEKPSAIQQRAIMPAIKGYDVIAQAQSGTGKTATFSIAILQKLDLSN--FNAQ----AL 108

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V V  CIGG +V ++   L  G H+VVGTPGR+ D 
Sbjct: 109 VLAPTRELAQQIQKVIMALGDYQKVKVHGCIGGTAVRQDLDVLNAGVHVVVGTPGRVFDM 168

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    LN   LK  +LDEADEML  GF+D I  +    P   ++++ SAT+   +  + K
Sbjct: 169 ISRGALNTDSLKMFILDEADEMLSRGFKDQIYDVFRRLPSSIQVILLSATMPDDVLEVTK 228

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D + + +  E      I    + V   + +   + ++        A++F +TR  V
Sbjct: 229 RFMRDPINILVKKEELTLEGIKQFFINVEKEEWKLETLTDLYDTMTITQAVIFLNTRRKV 288

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L E LF V ++ G++ Q ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 289 DWLKEKLNEKLFTVSSMHGDMDQSERDLIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 348

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 349 NYDLPTNRENYIH 361


>gi|221113161|ref|XP_002160326.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           [Hydra magnipapillata]
          Length = 605

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 184/358 (51%), Gaps = 13/358 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ I + L  +   + T +Q   L   L  +D++  A TGSGKT+ F L +      E
Sbjct: 171 KFPRSILQCLKRKDIKSPTPIQMQGLPTVLSGRDMIGIAFTGSGKTLVFTLPIV-MFCVE 229

Query: 66  NDRFSP---ASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVH 115
            ++  P      P  L IAP+RELA Q           L    A T + + +CIGG SV 
Sbjct: 230 QEKVLPFRKGEGPYGLLIAPSRELAKQTYDIILEFSESLRMDGAPT-LKILLCIGGTSVK 288

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  ++++G HIVV TPGRL D +  K + +   + + LDEAD M+D+GF DD+  I   
Sbjct: 289 DQAENIKHGVHIVVATPGRLMDLLNKKLITLDVCRFLCLDEADRMIDMGFEDDVRTIFSY 348

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +R+ L+FSAT+   I   A++     V VN+        DI      V   ++   +
Sbjct: 349 FKGQRQTLLFSATMPKKIQNFARSALVQPVTVNVGRAGAASLDIIQEVEYVKQEEKILFL 408

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L+   A   ++F   ++ V    + L     + VA+ G+ +Q+ER  ++   R+ + 
Sbjct: 409 LKCLQ-KTAPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKAQEERHRSVTQFRERKK 467

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            V +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+G+ G +   I +N +
Sbjct: 468 DVLVATDVASKGLDFPNIQHVINYDMPDDIENYVHRIGRTGRSGKTGYATTFINKNCE 525


>gi|145511916|ref|XP_001441880.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409141|emb|CAK74483.1| unnamed protein product [Paramecium tetraurelia]
          Length = 604

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 27/365 (7%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ++ + L + G+   T++Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 135 FEDVQCFPQMLMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPAIV 194

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+    + +  P  L +APTREL +Q+  + +     + +  A   GG   + ++  
Sbjct: 195 HILAQ----ARSHDPKCLILAPTRELTLQIYDQFQKFSVGSQLYAACLYGGQDRYIQKSQ 250

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+D    +R
Sbjct: 251 LRKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRMLDMGFEPQIRKIVDQIRPQR 310

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAI 235
           + ++FSAT    +  LA ++ +++ V + I     + NR    I Y    +  + R N  
Sbjct: 311 QTMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNRMIKQIVYVMKAIDKNQRYNQT 370

Query: 236 VNILRYH---------------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           ++    +                 K  ++FCST+    +  K L     + +AL G+  Q
Sbjct: 371 IDGANIYTRSSISLLLYLLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQ 430

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER   +   R+GR+   IATDVA+RG+D+ D+E+V++ ++    E+ +HR GRTGRAG 
Sbjct: 431 TERDYVMSHFRNGRSTALIATDVASRGLDIKDIEVVVNYDMPKVIEDYVHRIGRTGRAGA 490

Query: 341 KGMSV 345
            G S+
Sbjct: 491 IGQSI 495


>gi|289619768|emb|CBI54051.1| unnamed protein product [Sordaria macrospora]
          Length = 507

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 186/350 (53%), Gaps = 25/350 (7%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           I   I   + EA    GY N T +Q   +   L+ +D++  A+TGSGKT AF L +   L
Sbjct: 100 ILYGIVDALCEACERLGYKNPTPIQAESIPLALQNRDIIGIAETGSGKTAAFALPILQAL 159

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   D+  P     AL +APTRELA Q+ +  E L +   +  A+ +GG+ +  +   L 
Sbjct: 160 L---DKPQPL---FALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALG 213

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              H++V TPGRL DH+ + KG ++  ++ +V+DEAD +LD+ F   +E IL   P++RR
Sbjct: 214 KKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERR 273

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
             +FSAT+S  + +L +   +D ++V++++      S +    V +    +D  +V +  
Sbjct: 274 TFLFSATMSSKVESLQRASLRDPLKVSVSTNKYATVSTLKSNYVFIPHMHKDTYLVYL-- 331

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+  CS  ++              VV+ S       R  AL   R G   + +A
Sbjct: 332 ---CNDALPSCSAPSAWEPSPST-------VVSRS-----PSRLGALNKFRAGSREILVA 376

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           TDVAARG+D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q
Sbjct: 377 TDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQ 426


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 178/343 (51%), Gaps = 9/343 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSP 71
            L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +  R  FS 
Sbjct: 179 GLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSK 238

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRERRDLQNGA 125
              P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +   +++G 
Sbjct: 239 REGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 298

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I      +R+ L+F
Sbjct: 299 HMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLF 358

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I   AK+     V +N+        D+      V    +   ++  L+     
Sbjct: 359 SATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQ-KTPP 417

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V +ATDVA+
Sbjct: 418 PVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 477

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 478 KGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 520


>gi|124802784|ref|XP_001347593.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|23495176|gb|AAN35506.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
          Length = 917

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 182/346 (52%), Gaps = 24/346 (6%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP------ 71
           +GY N+T++Q+  +   L++ ++L  +QTGSGKT +F   + S L  EN+   P      
Sbjct: 544 KGYCNMTTIQKYSIPVILKKINLLACSQTGSGKTFSFLCPIISNLKKENEILRPHFPGSY 603

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
              +PL L + PTREL +Q+  E+  L     +V     GG ++  +   + +    I++
Sbjct: 604 ACISPLCLILCPTRELVIQIQNEVNSLTKNMSIVCMSFYGGETMKDQVAQINEKQGDIII 663

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR---DDIEFILDSSPK-KRRMLMF 185
            T GRL D +    +++S +K ++ DEADEM+ LG +   D+I F  D SPK  R+ + F
Sbjct: 664 CTAGRLLDLLNSCKVSLSFIKYLIFDEADEMISLGLKKQMDEIIFQKDLSPKDTRQTIFF 723

Query: 186 SATISPAITTLAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAI-----VNIL 239
           +AT S  +    + Y     V +NI  +    + I  R ++  +  +   I     + IL
Sbjct: 724 TATFSDKLKEHIEKYMSTPYVYLNIKQKRETKNRI--REIVKYVPAKSKFIELLKDIKIL 781

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G   AI+F   R S++     L    + V  L G++SQ  R +  +  R    ++ I
Sbjct: 782 K--GQ--AIIFVELRHSINNVFNFLKTKGYNVDYLHGKMSQIRRQSVFENFRKKSVQILI 837

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AT +AARG+D PDLELVI+ +L S  E  +HR GRTGR G+ GM++
Sbjct: 838 ATSIAARGLDFPDLELVINYDLPSEFEQYMHRIGRTGRIGKGGMAI 883


>gi|332293602|ref|YP_004432211.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171688|gb|AEE20943.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 452

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 190/379 (50%), Gaps = 14/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + G+   T +Q   L P +   DV+  AQTG+GKT A+ L +  TL   
Sbjct: 7   NLDKFLWNALDDMGFTQPTPIQVDALAPVMSGGDVVGIAQTGTGKTYAYLLPILRTL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L + PTREL +QV  ELE L     V VA   GG +++ ++  +  G 
Sbjct: 64  --PYSRQENPRVLILVPTRELVLQVVSELEKLTTYIDVRVAGVYGGANINTQKALIAQGQ 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + L +  ++ VV+DE D MLDLGFR  +  I D  PK+R+ +MF
Sbjct: 122 DIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQHIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           SAT++  +  L K++      + +A         + I Y+  +     + N ++  L + 
Sbjct: 182 SATMTEDVDALIKDFFSTPQFIRVAKSGTPLENITQIGYK--MPNFYTKVNFLLEELAFS 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIA 300
                 ++F   +    R    L E     V L     +Q  R N++     G+ R+ +A
Sbjct: 240 KKYPKTLLFVRDKRMADRLYLKLEEAFPGDVDLIHSNKTQNYRINSINAFAKGKVRMMVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAERL 359
           TDV ARG+D+ D+  VI+      PEN LHR GRTGRA ++G+S+ +  P+  +  AE +
Sbjct: 300 TDVMARGLDIDDITHVININTPRFPENYLHRIGRTGRAQKEGVSIVLSTPEEDEYLAE-I 358

Query: 360 FREANVSVVWEPAPSVEAI 378
                V V  +P P   AI
Sbjct: 359 EALMGVKVAIQPLPEDVAI 377


>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 462

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 161/317 (50%), Gaps = 2/317 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT  F L +   LLA + R     
Sbjct: 15  AVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQRLLANHGRGR--R 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA QVG  +            +  GGVS+      ++ G  I+V TPG
Sbjct: 73  QVRALVLTPTRELAAQVGESIIKYAHHLPFKTLIAYGGVSIKPNLDAIKLGVDILVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    L +S L+ +VLDEAD MLD+GF  DI  I+ + P +R+ L+FSAT S  I
Sbjct: 133 RLLDLLTQGALTLSQLEVLVLDEADRMLDMGFIVDIRRIMKALPAERQTLLFSATFSNDI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +   D   + +   N     +  R + V    R   + +++     +  +VF  T
Sbjct: 193 KALADDLLNDPTLIEVDPSNTAAEQVTQRIIQVDRERRRELLSHMIGRGNWQRVLVFVRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + + +     VA+ G+ SQ  R+ AL   R G  RV +ATD+AARG+D+  L
Sbjct: 253 KQIADRLAQQMQKDGLNTVAIHGDKSQGARNRALADFRSGEVRVLVATDIAARGLDIDQL 312

Query: 314 ELVIHAELSSNPENLLH 330
             VI+ EL    E+ +H
Sbjct: 313 PYVINFELPQMAEDYIH 329


>gi|114682561|ref|XP_001166253.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 1 [Pan
           troglodytes]
          Length = 737

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 165 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 222

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 223 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 279

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 280 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 339

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 340 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 395

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 396 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 455

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 456 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 515

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 516 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 564


>gi|40225538|gb|AAH11927.2| DDX27 protein [Homo sapiens]
 gi|48257213|gb|AAH16060.2| DDX27 protein [Homo sapiens]
          Length = 767

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 195 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 252

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 253 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 309

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 310 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 369

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 370 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 425

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 426 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 485

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 486 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 545

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 546 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 594


>gi|176866061|ref|NP_001116510.1| eukaryotic initiation factor 4A-II isoform c [Mus musculus]
 gi|74003462|ref|XP_860499.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 7 [Canis familiaris]
 gi|74003474|ref|XP_860687.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 12 [Canis familiaris]
 gi|114590938|ref|XP_001156093.1| PREDICTED: similar to initiation factor 4AII isoform 7 [Pan
           troglodytes]
 gi|26353724|dbj|BAC40492.1| unnamed protein product [Mus musculus]
 gi|74215693|dbj|BAE21449.1| unnamed protein product [Mus musculus]
          Length = 362

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 175/329 (53%), Gaps = 8/329 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRS 332
            ARGID+  + LVI+ +L +N EN +HRS
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRS 361


>gi|167539739|ref|XP_001741236.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165894254|gb|EDR22313.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 406

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 179/308 (58%), Gaps = 8/308 (2%)

Query: 48  SGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVA 106
           SGKT +F L +   LL   ++     A   + I PTRELA QV   L+ +  A  G++  
Sbjct: 43  SGKTASFLLPMIQHLLNVKEK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSC 99

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGL--NISHLKAVVLDEADEMLDL 163
           + +GG+ V ++   L    H++VGTPGR+  HI+  KG+  +I  +K +V+DEAD++L++
Sbjct: 100 LLVGGMDVMKQSVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEM 159

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYR 222
            F ++I+++++  P +R  ++FSAT+S  +  L +      V++    +  Q  D +   
Sbjct: 160 DFANEIDYLIEKLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQE 219

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              +    RD  +++IL+    K+ I+F    +  ++   +L +  +  + L G++SQQ+
Sbjct: 220 YCFIPFKYRDGYLLSILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQK 279

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+  + G+  + +ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G
Sbjct: 280 RLIALEKFKSGKRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSG 339

Query: 343 MSVFVIPQ 350
            ++ ++ Q
Sbjct: 340 YAITLVTQ 347


>gi|148665241|gb|EDK97657.1| eukaryotic translation initiation factor 4A2, isoform CRA_c [Mus
           musculus]
          Length = 367

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 175/329 (53%), Gaps = 8/329 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 44  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 103

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 104 ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 157

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 158 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 217

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 218 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 277

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 278 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 337

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRS 332
            ARGID+  + LVI+ +L +N EN +HRS
Sbjct: 338 LARGIDVQQVSLVINYDLPTNRENYIHRS 366


>gi|50427631|ref|XP_462428.1| DEHA2G20372p [Debaryomyces hansenii CBS767]
 gi|74600402|sp|Q6BH93|HAS1_DEBHA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49658098|emb|CAG90938.1| DEHA2G20372p [Debaryomyces hansenii]
          Length = 568

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 203/365 (55%), Gaps = 17/365 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +     L +   RF P 
Sbjct: 117 KAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSL--RFKPR 174

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +  +E   L  G ++++
Sbjct: 175 NGTGVVVVSPTRELALQIFGVARELMAHHSQT---FGIVIGGANRRQEAEKLMKGVNLLI 231

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  +G    ++KA+V+DEAD +L++GF ++++ I+   P + R+ ++FSA
Sbjct: 232 ATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILPNEDRQSMLFSA 291

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGA 244
           T +  +  LA+ + +   + +N+ASE+   +   ++   V+     R   + + L+ +  
Sbjct: 292 TQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQGYVVCESDKRFLLLFSFLKRNVK 351

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+   V  F ++L      V+ L G+  QQ+R+N      +    + I TDVA
Sbjct: 352 KKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGILICTDVA 411

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAERLFRE 362
           ARG+D+P ++ +I  +   +P + +HR GRT R  AG+    +F+ P  +     R  + 
Sbjct: 412 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAGKGKSLMFLTPSELGFL--RYLKA 469

Query: 363 ANVSV 367
           ANV +
Sbjct: 470 ANVPL 474


>gi|319787050|ref|YP_004146525.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465562|gb|ADV27294.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 458

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 180/336 (53%), Gaps = 15/336 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++P    +   L   GY   T +Q   L P L  +D+L  A TGSGKT AFGL L
Sbjct: 1   MTDFVSLPLSPALLPGLDALGYTAATPIQAQSLPPILDGRDLLAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH 115
              L     R        AL + PTRELA QVGR+L  L   TG+    ++V  GG+++ 
Sbjct: 61  LQRLDPAESRCQ------ALVLCPTRELADQVGRQLRRL--ATGIPNLKLSVLTGGMALE 112

Query: 116 RERRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +   L+ +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + +  I +
Sbjct: 113 PQIASLEAHDPQVVVGTPGRVQELARKRVLHLGVVRTLVLDEADRMLDMGFEEPVREIAN 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ L+FSAT   +I  LA+   +D V V++        DI+ R   V    R  A
Sbjct: 173 RCHGQRQTLLFSATFPDSIRELARQLLRDPVEVSVEG-GESAPDIEQRFFDVDAQFRQKA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L  + +  
Sbjct: 232 VAGLLLRYRPESAVVFCNTRKDVDEVAGSLRQFGFSALALHGDMEQRDRDEVLLQLANRS 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             V +A+DVAARG+D+ DL  V++ EL ++ +   H
Sbjct: 292 CNVLVASDVAARGLDVEDLAAVVNYELPTDVDAYRH 327


>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
 gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
          Length = 592

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 194/350 (55%), Gaps = 17/350 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++E  +   T +Q A +   L  KD++  AQTGSGKT A+ + +   LL     + P+++
Sbjct: 129 IAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLL-----YKPSTS 183

Query: 75  PLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              + + PTRELA+QV   G++L   +    + + + +GG+++ ++   L+    IV+ T
Sbjct: 184 TKVIILTPTRELALQVYEFGKKLS--HHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIAT 241

Query: 132 PGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATI 189
           PGRL DHIR     ++  ++ +V+DEAD ML+ GF++++  IL   PK KR+ L+FSAT+
Sbjct: 242 PGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKRQTLLFSATM 301

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKN 246
           +  I  L +   +  VR+ I    +  S +  +   V +  RD+   A++  L    +  
Sbjct: 302 NTRIQDLIQLSLQKPVRIMIDPPKQVASKLLQQ--FVRIRKRDHLKPALLYQLLKGVSTR 359

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF + + +  +   VL     +V  L G LSQ++R   ++  +     V I TD+AAR
Sbjct: 360 VVVFVARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPVLICTDLAAR 419

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+P +ELVI+ ++    E  LHR GRT RAGR G S+  + ++ Q RA
Sbjct: 420 GLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA 469


>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
 gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
          Length = 407

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 12/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+Q+  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           SAT+    +     +   D   ++  S  R+   I   A     +D     + +L++   
Sbjct: 187 SATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKI---AQWYHRADDAEHKLELLKHIIT 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +AT
Sbjct: 244 QQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAER 358
           DVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R
Sbjct: 304 DVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVAR 363

Query: 359 LFRE 362
             +E
Sbjct: 364 YVKE 367


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 183/336 (54%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 24  GLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNP 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   R+R  L+ GA +V+ TP
Sbjct: 84  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 144 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  +     +V
Sbjct: 204 SHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRNEGMRTMV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 264 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 324 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 359


>gi|255723333|ref|XP_002546600.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
 gi|240130731|gb|EER30294.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
          Length = 572

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 199/350 (56%), Gaps = 15/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +     L +   +  P 
Sbjct: 126 KAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSL--KIKPR 183

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V REL   +++T     + IGG    +E   L  G +++V
Sbjct: 184 NGTAVIIITPTRELALQIFGVARELMQYHSQT---CGIVIGGADRRQEATKLAKGVNLLV 240

Query: 130 GTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++   G   S+LKA+V+DEAD +L++GF D+++ I+   P + R+ ++FSA
Sbjct: 241 ATPGRLLDHLKNTPGFVFSNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSMLFSA 300

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244
           T +  +  LA+ + +   + +N+  + +   +D   +  +V  SD+   ++ + L+ +  
Sbjct: 301 TQTTKVEDLARMSLRPGPLYINVVPDKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNVK 360

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  + + TDVA
Sbjct: 361 KKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVA 420

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           ARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 421 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSEL 470


>gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 442

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 181/338 (53%), Gaps = 7/338 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A    G++  T +Q   +   LR  D++  A+TGSGKT AF L +  +LL    R     
Sbjct: 43  ACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTGAFILPILQSLLENQSRM---- 98

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              ++ +APTREL VQ+  +   L +   + VA  +GG+ +  +   L    HI+V +PG
Sbjct: 99  --YSVVLAPTRELCVQISEQFSALGSLISLQVANIVGGMDMVNQALSLAKKPHIIVASPG 156

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH+   KG NIS +K +V+DEAD +L + F   +  I+++ PK R   +FSAT++  
Sbjct: 157 RLVDHLENTKGFNISSVKYLVMDEADRLLSMDFEIALTKIIEACPKNRNTYLFSATMTTK 216

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +   K+ V++ + ++     ++    + +    + + +V +++       I+F +
Sbjct: 217 VAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPFKFKWSYLVILVQNLSQYTGIIFTN 276

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T  S  R   ++ +  F  V L G ++Q +R  AL   +  +  +   T+V +RG+D+P 
Sbjct: 277 TCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKSKQRHLLFTTEVGSRGLDIPH 336

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++ VI+ ++  + ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 337 VDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQ 374


>gi|167465104|ref|ZP_02330193.1| DEAD/DEAH box helicase domain protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 376

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 165/294 (56%), Gaps = 10/294 (3%)

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
           G+      GG  + ++ R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEML
Sbjct: 13  GIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLDHINRKTIKLEGVETVVLDEADEML 72

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
           D+GF DDI+ IL   P++R  ++FSAT+ P I  LA  + ++   V++  +      I  
Sbjct: 73  DMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLAHQFLRNPQHVSVIPKQVSAPLIAQ 132

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             + V    +  A+  +L     + AI+F  T+  V   ++ L +  +    L G+LSQ 
Sbjct: 133 AYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQN 192

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R N ++  RDG   V +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAG++
Sbjct: 193 QRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVINFDLPQDPESYVHRIGRTGRAGKE 252

Query: 342 GMS-VFVIPQNMQRRA--ERLFREANVSVVWEPAPS----VEAIRERDAQRILQ 388
           G +  FV P+ +      E++ R     +  +P PS    +E  ++  A+RIL+
Sbjct: 253 GTAWTFVTPREIDHLHFIEKVTRH---KISRKPLPSLAEAMEGKQKMTAERILE 303


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 182/367 (49%), Gaps = 30/367 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF-----------GLALASTLLAENDR 68
           Y   T VQ+  +   L ++D++  AQTGSGKT AF           G     T   +  R
Sbjct: 298 YTKPTPVQKYSIPIVLSKRDLMACAQTGSGKTAAFLVPVLNRVYDNGPGDIPTQNNQQGR 357

Query: 69  FSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +S     P+AL +APTRELA Q+  E      ++ V   V  GG  +  + RDL  G H+
Sbjct: 358 YSRRKQYPVALILAPTRELASQIYDEARKFAYRSRVRPCVVYGGADIGAQIRDLDRGCHL 417

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRML 183
           +V TPGRL D I    + + + K +VLDEAD M D+GF   I  I+  D+ P    R+ L
Sbjct: 418 LVATPGRLVDMIERGKIGLDYCKFLVLDEADRMSDMGFEPQIRRIVEKDTMPPSGTRQTL 477

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LA+++  + + + +        +I  + V V   D+ + ++++L    
Sbjct: 478 MFSATSPKEIQILARDFLDNYIFLAVGRVGSTSENITQKVVWVEEGDKRSFLLDLLNAAA 537

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              A  + F  T+         L    +   ++ G+ SQ+ER  AL+  R+G   + +AT
Sbjct: 538 GPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQKEREEALRQFRNGDRPILVAT 597

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+P++  V++ +L S+ E  +HR GRTGR G  G+            A   F 
Sbjct: 598 AVAARGLDIPNVRHVVNFDLPSDIEEYVHRIGRTGRVGNLGL------------ATSFFN 645

Query: 362 EANVSVV 368
           E N +++
Sbjct: 646 EKNKNII 652


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 184/339 (54%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSP 71
           L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L L    + L +   + S 
Sbjct: 23  LTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQQIAELQSSKAQASK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++ +     G +  V + GGVSV+ +   L+ GA I+V
Sbjct: 83  GNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGADILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK+++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL +    + V + + S +   S +  R + V   ++ + + ++++ +  + A++
Sbjct: 203 PEEVQTLTQALLNNPVEIQLQSADA--STVVQRVLTVNKGEKTSVLAHLIQKNQWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + + +     LA+         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 261 FVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLI 359


>gi|194224511|ref|XP_001501169.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Equus caballus]
          Length = 724

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 242 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 299

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 300 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 356

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 357 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 416

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 417 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 472

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 473 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 532

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 533 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 592

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 593 LKEIVKTAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 641


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 181/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ +  +  P 
Sbjct: 280 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQR-QLKPG 338

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 339 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 398

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFSAT    
Sbjct: 399 GRMIDMVKMKATNLRRVTYLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 458

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 459 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 517

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 518 FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 577

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P ++ V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 578 IPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 629


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 192/363 (52%), Gaps = 10/363 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +         
Sbjct: 2   DVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLP-AIVHINHQPYLERG 60

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G  I + T
Sbjct: 61  DGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAK---NA 247
            +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    A+     
Sbjct: 180 EVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+      T+ +    +  + + G+  Q ER   L   R G+A + IATDVA+RG
Sbjct: 240 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  ++  EAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 359

Query: 365 VSV 367
            ++
Sbjct: 360 QAI 362


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 190/357 (53%), Gaps = 11/357 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 291 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 350

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 351 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 410

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 411 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFS 469

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    + + ++ +LR  G +
Sbjct: 470 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRATGNE 529

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 530 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLVATSVAA 589

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V F  P++    A  L +
Sbjct: 590 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVK 646


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 183/336 (54%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 23  GLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNP 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   R+R  L+ GA +V+ TP
Sbjct: 83  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATP 142

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 143 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  +     +V
Sbjct: 203 SHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRNEGMRTMV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 263 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 323 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 358


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/358 (32%), Positives = 181/358 (50%), Gaps = 16/358 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           +P+ +   +    Y   T VQ+    I+N D   +D++  AQTGSGKT AF L + + L+
Sbjct: 320 LPETVLANVKRANYERPTPVQKYSIPIINAD---RDLMACAQTGSGKTAAFLLPVLTKLI 376

Query: 64  A---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               ++ +FS    P A+ + PTREL  Q+  E       T V   V  GG S++ + RD
Sbjct: 377 TNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQIRD 436

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----S 176
           LQ G HI++ TPGRL D I    + + H++ V+LDEAD MLD+GF  +I  +  S    S
Sbjct: 437 LQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPGMPS 496

Query: 177 PKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              R  LMFSAT    I  LA ++ ++D + + +       +D+    + V   D+   +
Sbjct: 497 KSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKRAKL 556

Query: 236 VNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           + ++          +VF  T+        +L++      ++ G+  QQER  AL+  +  
Sbjct: 557 LELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDFKSA 616

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
              + IAT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +      N
Sbjct: 617 VCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDNN 674


>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
 gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 179/352 (50%), Gaps = 9/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +DVL SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALP-ALQFLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQTLLFSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIV 249
           +     +  KD   ++     R+   I   A     +D     + +L+      A+ +IV
Sbjct: 195 VEGFTADLLKDPAEIDAEPSRRERKKI---AQWYHRADDMTHKLELLKKILTEQAERSIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  ++     L +       + GE+ Q  R+NA+   RDG   V +ATDVAARGID
Sbjct: 252 FLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           LPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++  + Q   +R+ R
Sbjct: 312 LPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDRVAR 363


>gi|328849281|gb|EGF98464.1| hypothetical protein MELLADRAFT_51000 [Melampsora larici-populina
           98AG31]
          Length = 503

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 190/367 (51%), Gaps = 31/367 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA-LAIAP 82
           + +Q A+    + ++DV+  A+TGSGKT+AFG+     +L+     +P    ++ L IAP
Sbjct: 101 SPIQSAVWPVLIAKRDVVGIAETGSGKTLAFGIPAFEHILS-----TPKVKTISVLVIAP 155

Query: 83  TRELAVQVGRELEWLYAKTGVVV-AVCI-GGVSVHRERRDLQ--NGAHIVVGTPGRLCDH 138
           TRELA+Q    L  L   T   +  +C+ GGV  + +R+ LQ  NG   V GTPGRL D 
Sbjct: 156 TRELAMQTESTLSELGKLTSPPIKTLCVYGGVDKNAQRKALQAENGVRAVAGTPGRLLDL 215

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKK-------RRMLMFSATIS 190
                L + ++  +VLDEAD MLD GF +DI  I++   P K       R   MFSAT  
Sbjct: 216 ANEGHLKLDNVSWLVLDEADRMLDKGFENDIRAIINLCLPSKSTTGSSTRLTAMFSATWP 275

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-----VNILRYHGAK 245
            ++  LA ++ KD VR+ +  +    S    ++V V    R         +  L   G  
Sbjct: 276 LSVRRLASDFMKDPVRILVGDDQLSASCSVEQSVEVLPDTRGKEFKLFETLKTLEKSGGF 335

Query: 246 N-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           N      IVF   +    R    L    F    + G++SQ +RS +L+  + GRA + +A
Sbjct: 336 NLKKDKVIVFALYKKEAQRLHAFLLRKGFGACCIEGDMSQDKRSQSLEDFKSGRATILVA 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE-- 357
           TDVAARG+D+P +E+VI+       E+ +HR GRTGRAGR G S+ F   ++     E  
Sbjct: 396 TDVAARGLDIPKVEVVINVTFPLTIEDYIHRIGRTGRAGRTGKSITFFTDEDKVHAGELM 455

Query: 358 RLFREAN 364
           R+ ++AN
Sbjct: 456 RVLKDAN 462


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 187/347 (53%), Gaps = 11/347 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 264 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 323

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 324 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 383

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 384 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFS 442

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    + + ++ +LR  G +
Sbjct: 443 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRATGNE 502

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT VAA
Sbjct: 503 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGQCPVLVATSVAA 562

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V F  P++
Sbjct: 563 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPES 609


>gi|86211175|gb|ABC87271.1| vasa-like protein [Macrobrachium rosenbergii]
          Length = 710

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 173/321 (53%), Gaps = 9/321 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELE 95
           D++  AQTGSGKT AF L +   L+A+      F     P A+ +APTREL  Q+  E  
Sbjct: 317 DLMACAQTGSGKTAAFLLPILQQLMADGVAASSFVELQEPEAIIVAPTRELINQIFLEAR 376

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                T V   V  GGV+   + R++  G +IV GTPGRL D I+   + ++ L+ +VLD
Sbjct: 377 KFAYGTCVRPVVVYGGVNTGFQLREISKGCNIVCGTPGRLLDVIQRGWIGLTKLRYLVLD 436

Query: 156 EADEMLDLGFRDDIEFILDSS---PKK-RRMLMFSATISPAITTLAKNYQK-DAVRVNIA 210
           EAD MLD+GF  D+  ++ S    PK+ R+ L+FSAT    I  LA ++ K D + + + 
Sbjct: 437 EADRMLDMGFEPDMRRLVASPGMPPKENRQTLLFSATYPQDIQKLAADFLKTDYLFLAVG 496

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                 SD++   V V    +   +++ L+  G +  +VF  T+         L +    
Sbjct: 497 IVGGACSDVEQTFVQVTKYSKREQLLDFLKTIGNERTMVFVETKRQADFIATFLCQEELP 556

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             ++ G+  Q+ER  AL   + G+  + +AT VAARG+D+P+++ V++ +L  N +  +H
Sbjct: 557 TTSIHGDREQREREQALADFKAGKCPILVATSVAARGLDIPEVQHVVNFDLPKNIDEYVH 616

Query: 331 RSGRTGRAGRKGMSV-FVIPQ 350
           R GRTGR G  G +V F  P+
Sbjct: 617 RIGRTGRCGNIGRAVSFYDPE 637


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 181/345 (52%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     D   + +A        I  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNDPSEIKLAVSKPAEKII--QAAYVCYENQKLGIIRSLFMDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 VFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQ 353


>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
          Length = 775

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 184/342 (53%), Gaps = 11/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +   GY+  T VQ+A +   L ++D++  A TGSGKT A+ + + + LL +    + A
Sbjct: 356 QNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMNILLEQG--VAGA 413

Query: 73  S-----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           S      P  + +APTRELA+Q+ RE       + +   +  GG  V+ +R +LQ G +I
Sbjct: 414 SHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQRSNLQAGCNI 473

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRML 183
           +V T GRL D +     + + +K ++LDEAD MLD+GF  DIE +++  + P K  RR+ 
Sbjct: 474 LVATAGRLKDFLDRGIFDFTAVKFLILDEADRMLDMGFGPDIEKMVNHPTMPPKGIRRVC 533

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA  Y +D + V        + D++      +  D+   ++ +L+  G
Sbjct: 534 MFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDKRTKLMEVLQDLG 593

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  ++ +       L  +  Q  ++ G+  Q +R  AL+  ++G   + +AT+V
Sbjct: 594 DAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFKNGVRNILVATNV 653

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  +  V++ +L ++ E  +HR GRTGR G  G S+
Sbjct: 654 AARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSI 695


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 192/365 (52%), Gaps = 11/365 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   P 
Sbjct: 14  DALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVLNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E   +    + V V     G+   ++++ L  GA +V+
Sbjct: 71  DAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   V +A    + +D   +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNNPAEVKLAVS--RPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V   TK L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 IFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVS 366
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   +++  F E ++ 
Sbjct: 309 DIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNFKQIENFLERDIY 368

Query: 367 VVWEP 371
            +  P
Sbjct: 369 KIPVP 373


>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
 gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
          Length = 407

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 12/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+Q+  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           SAT+    +     +   D   ++  S  R+   I   A     +D     + +L++   
Sbjct: 187 SATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKI---AQWYHRADDAEHKLELLKHIIT 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +AT
Sbjct: 244 QQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNVLLAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAER 358
           DVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R
Sbjct: 304 DVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVAR 363

Query: 359 LFRE 362
             +E
Sbjct: 364 YVKE 367


>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 493

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 179/356 (50%), Gaps = 18/356 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +   L+ +DV+  AQTG+GKT AF L +   LL +  +FS       L
Sbjct: 20  GYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQRLLEK--KFSGQGPIRVL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV----SVHRERRDLQNGAHIVVGTPGR 134
            +APTRELA+Q+      L  + G+  A   GGV     +   RR     + ++V  PGR
Sbjct: 78  VLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQAARR-----SSVIVACPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +    + +  +  +VLDEAD MLD+GF  DI  I+   P++R+ L+FSAT+   I 
Sbjct: 133 LLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRRQNLLFSATMPDDIR 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            LA         V +A+     + +++    V+   ++N +  +L      + +VF  T+
Sbjct: 193 DLADKILYRPATVQVANTAPAKT-VEHVFYPVSQHLKNNLLFKVLEQTDYDSLLVFTRTK 251

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + LA    +   L G +SQ +R  AL   RDG  +V +ATD+AARGID   + 
Sbjct: 252 HKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVATDIAARGIDCDRIT 311

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
            V++ ++    E   HR GRTGRAGR G +  FV   ++     RL RE   +V +
Sbjct: 312 HVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDL-----RLMREIEKAVGY 362


>gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 465

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/346 (35%), Positives = 184/346 (53%), Gaps = 9/346 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L +   +         A+ 
Sbjct: 18  LETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVH------AAG 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+QV   +        + V    GG S+ R+ + L+ G  +VVGTPGR
Sbjct: 72  IQALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQRLRRGVQVVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAI 193
           + D +    L +  L+ +VLDEADEML +GF  D+E IL+S+  + R+   FSAT+ P+I
Sbjct: 132 ILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTAFFSATMDPSI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252
           + L + + K  V V + +       I+    +V     +  A+  IL     ++AI+F  
Sbjct: 192 SKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEPILELEDPESAIIFVR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S +  T  L      V    G L+Q +R   L  +R  + R  +ATD+AARG+D+  
Sbjct: 252 TKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVATDIAARGLDVDH 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           L  VI+ +L    E+ +HR GRTGRAGR+G ++ +I Q++ RR  R
Sbjct: 312 LTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLI-QSIDRRKLR 356


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 185/360 (51%), Gaps = 11/360 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPD-LREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            P  I   L+ +G+   T +Q AI  P+ +   D +  A+TGSGKT+ F L     + A+
Sbjct: 156 FPDYIYGTLNXQGFSEPTPIQ-AIGWPNAMSGHDCVGIAKTGSGKTLGFILPAIVHINAQ 214

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                P   P+ L + PTRELA QV +++   +  +  +   C+ GG S   + RDL+ G
Sbjct: 215 -PYLDPGDGPIVLVLCPTRELAQQV-QQVAAEFGSSSHIKNTCVYGGASKGPQLRDLERG 272

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  K  N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 273 CEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLM 332

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           +SAT    ++ LA ++  D V V + S   +  H+ +    V   + ++D  ++ ++   
Sbjct: 333 WSATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQIVDVCQPM-EKDEKLMRLMEEI 391

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+      T+ +    +  + + G+ SQ ER   L   R GR+ + +
Sbjct: 392 MGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILV 451

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ D++ VI+ +  S  E+ +HR GRT RA +KG +      +  ++A+ L
Sbjct: 452 ATDVASRGLDVHDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAKDL 511


>gi|238784177|ref|ZP_04628190.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
 gi|238714886|gb|EEQ06885.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
          Length = 441

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   ++ V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILEEPVELEADPSRRERKKIQQWYYRAD--DIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 179/340 (52%), Gaps = 9/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L +   L  E+  FS  S 
Sbjct: 36  LTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPILQQL-HEDKPFSTKSG 94

Query: 75  P----LALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
                  L + PTRELA QV   ++ +     G +  V + GGVS + +   L+ G  I+
Sbjct: 95  KGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGTDIL 154

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +LD  PK+++ L+FSAT
Sbjct: 155 VATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDLLPKQKQTLLFSAT 214

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               + TL +    D + + + S +   S +  R   V   ++   + ++++ +  + A+
Sbjct: 215 FPEQVQTLTQELLNDPIEIQVQSADA--STLVQRVFTVNKGEKTALLAHLIKQNEWRQAL 272

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F + + S       L++         G+  Q  R+  L+  + G   V IAT++AARG+
Sbjct: 273 IFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRILEAFKLGEIEVLIATNIAARGL 332

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 333 DIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 372


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 193/370 (52%), Gaps = 10/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
               + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++  
Sbjct: 398 TDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLI 457

Query: 358 RLFREANVSV 367
            + REAN ++
Sbjct: 458 SVLREANQAI 467


>gi|15603705|ref|NP_246779.1| ATP-dependent RNA helicase SrmB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12722265|gb|AAK03924.1| SrmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 442

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 175/334 (52%), Gaps = 14/334 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  +   + ++DVL SA TG+GKT AF L     LL +  R  P  AP  L
Sbjct: 23  GYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLL-DYPRRKPG-APRIL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  + E     T + +A   GGV+         +   IVV TPGRL  +
Sbjct: 81  ILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQY 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLA 197
           I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+FSAT+    +   A
Sbjct: 141 IKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFA 200

Query: 198 KNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY---HGAKNAIVFC 251
                + V+++     R+   I    Y A        ++ I  + R+         IVF 
Sbjct: 201 SRLLTEPVQIDAEPSRRERKKIQQWYYHA-----DSNEHKIKLLARFIDEEQVSRGIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V   ++ L +   +   L GE++Q +R+NA+  +++G   V +ATDVAARGID+ 
Sbjct: 256 RRREEVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIE 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  V++ +L  + +  LHR GRT RAG+KG++V
Sbjct: 316 DVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAV 349


>gi|143454912|sp|Q0DBU5|RH31_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 547

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 18/346 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLA-ENDRFSPASA 74
           GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF    + + S L   + D+  P  +
Sbjct: 98  GYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPIS 157

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTP 132
              + + PTRELA Q   E  + L     + V + IGG  +  E++ +  N   I+V TP
Sbjct: 158 --VVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATP 215

Query: 133 GRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GRL DH+    G    +  +K ++LDEAD +LD+GFR DIE I+ + PK+R+ L+FSAT+
Sbjct: 216 GRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATV 275

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +  +     ++D   VN   E  +  HS +    V+  L  + + +  +L  H ++N
Sbjct: 276 PDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSILYGLLTDHISEN 335

Query: 247 A----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC+T    S   ++L+E    V  +     Q  R+   +  ++ +  + +++D
Sbjct: 336 VDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFKESKGLILVSSD 395

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V+ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++
Sbjct: 396 VSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLL 441


>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
 gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
          Length = 770

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 180/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 168 NLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL-- 225

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L + PTRELA QV   +E L   T +   + +GG+S   +   L++
Sbjct: 226 ---FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 282

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    + +  L  V+LDEAD +L+LGF  +I+ ++   PK+R+ 
Sbjct: 283 MPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQT 342

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNIL 239
           ++FSAT++  I  L K      VR+      ++ + +    V +     S+++  ++ + 
Sbjct: 343 MLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALC 402

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ I+F  T+ S  R   +      +   L G L+Q +R  AL++ R       I
Sbjct: 403 LKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLI 462

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+  ++ VI+     + +  LHR GRT RAGR+G +V  +
Sbjct: 463 ATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFV 511


>gi|114647685|ref|XP_001170267.1| PREDICTED: ATP-dependent RNA helicase DDX55 isoform 8 [Pan
           troglodytes]
          Length = 600

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 192/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDL-QNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +     Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVEKFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 437

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 181/342 (52%), Gaps = 9/342 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   +  
Sbjct: 19  LVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNHLL---ETA 75

Query: 70  SPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +PA    + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELALQIYNDASSLIASTGLKAGLAYGGEPYEKQKAVLDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+     +P +R  L
Sbjct: 136 DILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPSERLSL 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSI 357


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 17/366 (4%)

Query: 19  GYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA-----ENDRFSPA 72
           GY   T +Q+  +   +  K D++  AQTGSGKT AF L + + LL      +  RF+P 
Sbjct: 124 GYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPIINALLKSGIHKDKRRFAPN 183

Query: 73  SA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E      +T +   V  GG S   + + L+ G  I+VGT
Sbjct: 184 KGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGASSGYQMKQLERGVDILVGT 243

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKKRRM-LMFSA 187
           PGR+ D I+ + L++S ++ +VLDEAD MLD+GF   I  I++ S   PK  R+ L++SA
Sbjct: 244 PGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIVEGSGMPPKGDRLTLLYSA 303

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAK 245
           T       LA ++  D + V +        +I      V    + + +V +L  +    +
Sbjct: 304 TFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRRGKQDKLVEVLTEKKEERE 363

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   +++  R  ++L    F+   + G+  Q+ R  +L+  +DG   + +ATDVAA
Sbjct: 364 KTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSLRQFKDGYTNILVATDVAA 423

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQN---MQRRAERLFR 361
           RG+D+  +  VI+ +L    ++ +HR GRTGR G  G+ + F  P     + R   ++ +
Sbjct: 424 RGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIATAFFDPSEDGKLCRELVKILK 483

Query: 362 EANVSV 367
           +AN  +
Sbjct: 484 DANQEI 489


>gi|261332727|emb|CBH15722.1| ATP-dependent DEAD/H RNA helicase HEL64,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 568

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 178/344 (51%), Gaps = 5/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +  A   +A  
Sbjct: 109 VPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGF-MVPALAHIAVQ 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           +       P+ + +APTRELA Q+  E + +    G V   C+ GG     +   L+ G 
Sbjct: 168 EPLRSGDGPMVVVLAPTRELAQQIEEETKKVIP--GDVYCGCVYGGAPKGPQLGLLRRGV 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ +MF
Sbjct: 226 HILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    I  LA  +QK  +R+++ S   Q + D+  R +L     + + +  +++ H  
Sbjct: 286 SATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHRE 345

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R       +ATDVA
Sbjct: 346 ERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  LE VI+ +     ++ +HR GRTGRAG KG +  +I
Sbjct: 406 ARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLI 449


>gi|238753931|ref|ZP_04615291.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
 gi|238707919|gb|EEQ00277.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
          Length = 437

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   ++ V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILEEPVELEADPSRRERKKIQQWYYRAD--DIEHKTALLVHLLKQPDVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|255085454|ref|XP_002505158.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226520427|gb|ACO66416.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 675

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/371 (32%), Positives = 184/371 (49%), Gaps = 16/371 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I + L+ +G    T +Q   L   L  +D++  A TGSGK++ F L +    + E 
Sbjct: 235 FPKPIIDELTRKGIARPTPIQIQGLPVILSGRDIIGIAFTGSGKSLTFVLPMIMAAMMEE 294

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWL---YAKTGVV---VAVCIGGVSVHRER 118
            R        P+ L + P+RELA Q    +E      AK G+    + +CIGGV   RE+
Sbjct: 295 HRMPLEGGEGPVGLILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIGGVD-SREQ 353

Query: 119 RDL--QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            D+    G H+V  TPGRL D +  K +N+   K + +DEAD M+DLGF DDI  I    
Sbjct: 354 SDIVRNAGVHMVTATPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFEDDIRDIYSFF 413

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A++   + + VN+      + D+      V    +   ++
Sbjct: 414 KSQRQTLLFSATMPEKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 473

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   A   ++FC  +  V    + L     + VA+ G   Q ER  A+   +  R  
Sbjct: 474 ECLQ-KTAPPVLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAISEFKAQRKD 532

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA +G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I +N     
Sbjct: 533 VLVATDVAGKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFINKNQSETI 592

Query: 357 ----ERLFREA 363
               + L REA
Sbjct: 593 LLDLKHLLREA 603


>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 658

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 189/357 (52%), Gaps = 8/357 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y + T +Q   +   L  +DVL  A+TGSGKTVA+ L  A   + +         P++L 
Sbjct: 156 YEHPTPIQAQSIPAALSGRDVLGIAKTGSGKTVAY-LWPAIIHIMDQPDLKEGDGPISLV 214

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           I PTRELA+QV +E +  Y K   +  VC  GG +   ++  L  GA +V+ TPGR+ D 
Sbjct: 215 IVPTRELALQVYQEAK-RYCKVYNINVVCAYGGGNKWEQQNALTEGAELVIATPGRIIDL 273

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++    N + +  +V DEAD M D+GF   ++ I D     R+ LMFSAT    +  LA+
Sbjct: 274 VKINATNFTRVTFLVFDEADRMFDMGFEAQVQSISDHIRPDRQCLMFSATFKSKVEKLAR 333

Query: 199 NYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRAS 256
               D VR+        +SD I    VL     +   ++N ++++      ++F + +  
Sbjct: 334 EALTDPVRIVQGEVGEANSDVIQTVEVLENADAKWQWLLNHLVKFSSMGKVLIFVTKKIH 393

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L    F+ + L G++ Q ER+  LQ  R   A + +ATDVAARG+D+P+++ V
Sbjct: 394 AEDVANRLRTKDFKPILLHGDMLQAERNEKLQAFRKD-ANILVATDVAARGLDIPEIKTV 452

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVWEP 371
           I+ +L+ + +  +HR GRTGRAG++G +  ++ ++ +  A  L R  E+   +V EP
Sbjct: 453 INFDLARDIDTHVHRIGRTGRAGQRGWAYTLVQESDKEMAGHLVRNLESVNQIVPEP 509


>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1130

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 188/348 (54%), Gaps = 6/348 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+  RG+   T +Q   +   L  +DV+  ++TGSGKT AF + L + L   
Sbjct: 305 NLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINKL--- 361

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S      AL + PTRELA+Q+   L+     T +   + +GG  +  +   L +  
Sbjct: 362 -QNHSRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESLASNP 420

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL   I    L+++ ++ ++ DE D + ++GF D ++ IL    ++R+ LMF
Sbjct: 421 DIIIATPGRLSQLIDETDLSLNKVEFLIFDECDYLFEMGFADQMKTILKKVSQQRQTLMF 480

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHG 243
           SATI   +++ A+   K+ V V + SE   + +I    +L   +++  ++V +L+     
Sbjct: 481 SATIPEELSSFARAGLKEYVFVKLDSEFTINENITLNFILTRNNEKIASLVYLLKSVIPS 540

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N+IVF ST+  V     +L +     V++ G++    R + +   R+ +  V + TD+
Sbjct: 541 EENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCNVMVVTDL 600

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           A+RGIDLP++  VIH +  ++ +  +HRSGRT RAGRKG +  ++  N
Sbjct: 601 ASRGIDLPNVNNVIHYDYPASTKIFIHRSGRTARAGRKGNTYALMGMN 648


>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
 gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
          Length = 839

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 7/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   TS+Q   +   L  +D++  A+TGSGKT AF   L   L+ + +     
Sbjct: 314 KAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQRE-LKAG 372

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 373 EGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSKALEQGAEIIVATP 432

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I       R+ L+FSAT    
Sbjct: 433 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQTLLFSATFKRR 492

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIV 249
           I  LA++   D +R+     N  + D+  +AV V  + +      + +++++    + ++
Sbjct: 493 IERLARDVLTDPIRIVQGELNEANQDVT-QAVYVLPNPQQKWNWLLCHLVKFLAEGSCLI 551

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +A        L    F  + L G++ Q +R+  +   +     + IATDVAARG+D
Sbjct: 552 FVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDILIATDVAARGLD 611

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P +  V++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R  N+    
Sbjct: 612 IPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFAGHLVR--NLEGAD 669

Query: 370 EPAPS 374
           +P PS
Sbjct: 670 QPVPS 674


>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 493

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/368 (32%), Positives = 190/368 (51%), Gaps = 10/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I E L  +G+   T +Q       L  +D++  AQTGSGKT++F   L   + A++
Sbjct: 94  FPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSF--ILPGLVHAKD 151

Query: 67  DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +       P+AL +APTREL +Q+ +  +      G+      GG S   + + L  G 
Sbjct: 152 QQPLRRGDGPIALVLAPTRELVMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKALHEGV 211

Query: 126 HIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL D H +G    +S +  +VLDEAD MLD+GF   +  I+  +   R+ LM
Sbjct: 212 EIVIATPGRLIDLHEQGHA-PLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNGNRQTLM 270

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +SAT    +  LA++Y  D ++V + +E  + +S I     + +  ++++ ++ +L    
Sbjct: 271 WSATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKEDKLLGVLDKFK 330

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVFC+ + +      VL    +   AL G+ SQ  R   L   R GR  + IAT+V
Sbjct: 331 GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEV 390

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMS--VFVI-PQNMQRRAERL 359
           A RG+D+ D++LVI+ +     E+ +HR GRT R   K G+S   F I  +   R   R+
Sbjct: 391 AGRGLDVNDVKLVINFDFPGTCEDYVHRIGRTARGNTKEGISHTFFTINDKGNARELIRM 450

Query: 360 FREANVSV 367
            REAN +V
Sbjct: 451 LREANQTV 458


>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 442

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 202/401 (50%), Gaps = 27/401 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+++  Y   T++Q+  + P L  +DV+  AQTG+GKT A+ L +   L     +++
Sbjct: 14  ILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPIIMKL-----KYA 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S P AL ++PTRELA+Q+   ++     T +   V  GG+   ++   L+ G  I+V 
Sbjct: 69  QGSDPRALILSPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIEALEKGVDILVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D    + +N   +K +V+DEAD+M+D+GF   I  IL+  P+KR+ L+FSAT+S
Sbjct: 129 TPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHRILEVIPRKRQNLLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAK 245
             +  +A ++      V ++ +    + +  +   V  +      +N+L+Y         
Sbjct: 189 ELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPNTKTK---INLLQYLLKNDEDFH 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             I+F  T+         L+      +V  +     Q  R N++   ++G  R+ +ATDV
Sbjct: 246 RLIIFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSVRILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLF 360
           AARG+D+ D+  VI+ ++    E+ +HR GRTGRA + G+++    P       + E+L 
Sbjct: 306 AARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYYITKIEKLI 365

Query: 361 R------EANVSVVWEPAPSVEA---IRERDAQRILQDPLF 392
           R      E    V+ E  P  E     RE D Q+  ++P F
Sbjct: 366 RQQIPVSELPAEVLIEKTPFEEKQAQAREIDMQKRKENPEF 406


>gi|224074379|ref|XP_002304361.1| predicted protein [Populus trichocarpa]
 gi|222841793|gb|EEE79340.1| predicted protein [Populus trichocarpa]
          Length = 361

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/276 (38%), Positives = 163/276 (59%), Gaps = 7/276 (2%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PL L +APTRELA Q+   L       GV      GG S   + + L+ G  IV+GTPGR
Sbjct: 17  PLCLVLAPTRELADQISVVLRDAGEPCGVRSVCIYGGTSKGPQIKSLKAGVDIVIGTPGR 76

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D I    L+++ +  VVLDEAD MLD+GFR ++  IL ++   R+M+MFSAT    + 
Sbjct: 77  LKDLIEMNVLHLAEVSFVVLDEADRMLDMGFRQEVRSILSNTCSARQMIMFSATWPLDVH 136

Query: 195 TLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGAKN--AI 248
            LA+ Y   + V+V + SE+   ++ D   ++  L D  RD  ++ +L +YH ++    +
Sbjct: 137 NLAEEYMDPNPVKVVVGSEDTA-ANHDVMQIVEVLEDHLRDQRLLALLEKYHKSQQNRVL 195

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +    R   +L +  + VV++ G  +Q++R+ AL + + G   + +ATDVAARG+
Sbjct: 196 VFALYQKEAERLDGMLRKSGWNVVSIHGNKAQEQRTKALSLFKKGSCPLMVATDVAARGL 255

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+PD+E+VI+       E+ +HR GRTGRAG+KG++
Sbjct: 256 DVPDVEVVINYTFPLTAEDYVHRIGRTGRAGKKGVA 291


>gi|322698059|gb|EFY89832.1| ATP-dependent RNA helicase HAS1 [Metarhizium acridum CQMa 102]
          Length = 581

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 189/350 (54%), Gaps = 17/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T++Q   + P L  KDVL +A+TGSGKT+AF +     L A   RF P 
Sbjct: 117 KAINEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEILSAL--RFKPR 174

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 175 NGTGVIVVSPTRELALQIFGVARELMQHHSQT---YGIVIGGANRKAEAEKLSKGVNLLI 231

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSAT 188
            TPGRL DH+        +LK++V+DEAD +L++GF D+I  I+   S   R+ ++FSAT
Sbjct: 232 ATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDDRQTMLFSAT 291

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----H 242
            +  +  LA+ + +   + +N+  E +Q S +D       L D D   + +  +      
Sbjct: 292 QTTKVEDLARISLRPGPLYINV-DEEKQFSTVDGLEQGYVLCDADKRFILLFSFLKRMKE 350

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + I TD
Sbjct: 351 KKKKVIVFFSSCNSVKYYAELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAEHGILICTD 410

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQN 351
           VAARG+D+P ++ ++  +   N  + +HR GRT R A  KG S+  +  N
Sbjct: 411 VAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPN 460


>gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Strongylocentrotus purpuratus]
          Length = 660

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 199/389 (51%), Gaps = 23/389 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S   +   T +Q A +   L  KD+   A TG+GKT AF L +   LL  
Sbjct: 85  NLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVVERLL-- 142

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL VQ+      L   T +   + +GG+ +  +   L+ 
Sbjct: 143 ---YKPKQAPVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALRK 199

Query: 124 GAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  IV+ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 200 GPDIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQT 259

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN------AIV 236
           ++FSAT++  +  LA    K+ VR+ +     +++D+ Y      +  RDN      AIV
Sbjct: 260 MLFSATMTDQVKDLALVSLKNPVRIFV----NENTDVAYNLQQEFIRIRDNREGDREAIV 315

Query: 237 NIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           + L    +H   + +VF  T+    R   +L     +V  L G+LSQ +R   L+M ++ 
Sbjct: 316 SALCCRNFHD--HCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKED 373

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + +ATD+AARG+D+  ++ VI+  + ++ ++ +HR GRT RAGR G SV +  +  +
Sbjct: 374 LIDILVATDLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKER 433

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERD 382
           R  + L + A   V     P     + RD
Sbjct: 434 RMLKELVKRAKNPVKSRIIPQGVVAKYRD 462


>gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
 gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
          Length = 447

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 184/345 (53%), Gaps = 10/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL + G+  LT VQEA++   L+ ++++V +QTGSGK+ +F + +   L    D+  
Sbjct: 15  IKEALGQLGFSRLTPVQEAVIPYALKGRNLIVQSQTGSGKSHSFLIPIFQQLDPSLDQVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+ +  + L + +   + V   +GG    R+   LQ G   +
Sbjct: 75  ------VVITAPSRELATQLYQAAKQLASTSPEPLRVVHYMGGTDKQRQVDKLQAGQPQV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGR+ D +    L++   K +V+DEAD  +DLGF   ++ I    P+  ++++FSA
Sbjct: 129 VIGTPGRIYDLMASHALHVQTAKIMVVDEADMTMDLGFLQVVDDIASRMPEDLQLMVFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +      Y  +   + I  +    S ID   +     DR   + ++L       A
Sbjct: 189 TIPQQLEVFLNKYVTNPEFIQIEPQEVLASKIDNYLINTKGRDRSALVYDLLTMGHPFLA 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC+T+   +  T+ L E   +V ++ G+L+ +ER   ++ ++D   +  +A+D+AARG
Sbjct: 249 LVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKDLEYQYVVASDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           ID+P + +VI+ EL    E  +HR GRTGR    G +  F+ P +
Sbjct: 309 IDIPGISMVINTELPKELEFFVHRVGRTGRNQLAGTAYTFMTPDD 353


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 186/341 (54%), Gaps = 11/341 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ E L+  G+   T +Q       L+ +D++  A+TGSGKT+  G  +   +  +   
Sbjct: 175 EILKEVLNA-GFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTL--GYLIPGFIHLKRSC 231

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
             P   P  L ++PTRELA Q+  ++E + + K+      C+ GG     + ++L  GA 
Sbjct: 232 NDPRLGPTVLVLSPTRELATQI--QVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDRGAD 289

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++S +  +VLDEAD MLD+GF   I  I+   P +R+ LM++
Sbjct: 290 IVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYT 349

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           AT    +  +A +   + V+VNI +  E   +  I     L+A  ++   +  ILR    
Sbjct: 350 ATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRLEQILRSQES 409

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+FCST+    + ++ L    F   A+ G+ SQ ER   L   R GR+ + +ATDV
Sbjct: 410 GSKIIIFCSTKKMCDQLSRNLTRQ-FGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDV 468

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           AARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++
Sbjct: 469 AARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVA 509


>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
           TREU927]
 gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
           brucei]
          Length = 568

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 178/344 (51%), Gaps = 5/344 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +  A   +A  
Sbjct: 109 VPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGF-MVPALAHIAVQ 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           +       P+ + +APTRELA Q+  E + +    G V   C+ GG     +   L+ G 
Sbjct: 168 EPLRSGDGPMVVVLAPTRELAQQIEEETKKVIP--GDVYCGCVYGGAPKGPQLGLLRRGV 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ +MF
Sbjct: 226 HILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQIRPDRQTVMF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    I  LA  +QK  +R+++ S   Q + D+  R +L     + + +  +++ H  
Sbjct: 286 SATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDELRKLMQEHRE 345

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R       +ATDVA
Sbjct: 346 ERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPRLCLVATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  LE VI+ +     ++ +HR GRTGRAG KG +  +I
Sbjct: 406 ARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLI 449


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 180/336 (53%), Gaps = 13/336 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA---LASTLLAENDRFS 70
            L   G+   +++Q+  + P ++ +DV+  AQ+G+GK+    ++   L    L E     
Sbjct: 41  GLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTCQLVDVTLRECQ--- 97

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L ++PTRELA Q  + +  +     +    CIGG S+  + R L +G H+V G
Sbjct: 98  ------VLILSPTRELAQQTEKVILAVGDFMNIQAHACIGGKSLGEDIRKLDSGVHVVSG 151

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+ + L   H+K ++LDEADEML   F+D I  I    P + ++++ SAT+ 
Sbjct: 152 TPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPETQVVLVSATLP 211

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIV 249
             +  +   +  D +RV +  +      I    V V   + + + + ++        A++
Sbjct: 212 AEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 271

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T+ + ++ F V ++ G++ Q+ER   +   R G ARV I TDV ARG+D
Sbjct: 272 FCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVLITTDVWARGLD 331

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  + LVI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/369 (31%), Positives = 197/369 (53%), Gaps = 13/369 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   T +Q       ++ +D++  A+TGSGKT+  G  L   +L + 
Sbjct: 164 FPSDILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTL--GYLLPGFILLKR 221

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +    P  L ++PTRELA Q+  E    + ++  + + C+ GG     + R+L+ GA
Sbjct: 222 LHHNSREGPTVLVLSPTRELATQIQDEA-IKFGRSSRISSTCLYGGAPKGPQLRELERGA 280

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM+
Sbjct: 281 DVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMY 340

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           +AT    +  +A +   + V+VNI + ++   +  I     ++   ++   +  ILR   
Sbjct: 341 TATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQD 400

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    +  + L+   +   A+ G+ SQ ER + L   R GR  V +AT
Sbjct: 401 PGSK-IIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQAERDSVLNDFRSGRCPVLVAT 458

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G +  F   Q+ +  +E  +
Sbjct: 459 DVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASELVK 518

Query: 359 LFREANVSV 367
           +   AN SV
Sbjct: 519 ILEGANQSV 527


>gi|119025641|ref|YP_909486.1| ATP-dependent RNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765225|dbj|BAF39404.1| possible ATP-dependent RNA helicase [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 728

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 180/388 (46%), Gaps = 31/388 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P  +   L+  G      +Q   L   L  +D+L   +TGSGKT+AF + L + L    
Sbjct: 35  VPGPLVRVLAADGKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVARLGEVD 94

Query: 63  --LAEN---------------------DRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
               EN                     D F P   P  L +APTRELA Q+   L  L  
Sbjct: 95  ADEYENMSQFRHEVEQVRKGHAEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAQ 152

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             G+      GGV   R+ RDL+ GA IVV  PGRL D +    L +  ++  V+DEADE
Sbjct: 153 MYGMTTTTVYGGVRYARQIRDLRAGADIVVACPGRLEDLLEQHALTLEKVEVAVIDEADE 212

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           M D+GF   ++ +L       ++++FSAT+   +  +   +  D    ++ S      ++
Sbjct: 213 MADMGFLPPVKRLLGQVSFDAQVMLFSATLDHGVDEVVNTFLTDPKIHSVDSATAAVDEM 272

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            +        DR   +  +    G +  I+F  T+    +  K L ++      L G LS
Sbjct: 273 THHVFETTQGDRHELVRTLASGKGRR--ILFTRTKFQTQKLAKDLTKNGIPAAELHGNLS 330

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R   L     G   V +ATDVAARGID+  +ELV+  E   +P++ LHRSGRT RAG
Sbjct: 331 QNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFLHRSGRTARAG 390

Query: 340 RKGMSVFVIPQNMQRRAERLFREANVSV 367
             G  V ++  N +RR  R+  EA + V
Sbjct: 391 HSGDVVTIVLPNQRRRTRRMLHEAGLKV 418


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 3/340 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+   T +Q       L+ +D++  A+TGSGKT+A+ L  A   +   
Sbjct: 106 FPDYVIEEIVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLPAIVHVNAQ 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E     A + +      GG     + RDL  G  
Sbjct: 165 PYLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQVRDLSKGVE 224

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 225 IVIATPGRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 284

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL-RYHGA 244
           AT    +  LA+    +  +V I S + + +  I+    +V+  ++   ++ +L      
Sbjct: 285 ATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQLLEEIMDG 344

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 345 SRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 404

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 405 ARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTA 444


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 202/373 (54%), Gaps = 11/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +
Sbjct: 186 NLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 245

Query: 66  -NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D  S    + P  + ++PTREL +Q+  E       + + VAV  GG +V  +  ++ 
Sbjct: 246 PKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIA 305

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++         
Sbjct: 306 RGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETT 365

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++ N++  +
Sbjct: 366 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 425

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  + G+  + 
Sbjct: 426 IEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCIL 485

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRA 356
           +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G  +S +   Q++   A
Sbjct: 486 VATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVA 545

Query: 357 E--RLFREANVSV 367
           +  ++ R+A+ SV
Sbjct: 546 DLSKILRQADQSV 558


>gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 451

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 173/324 (53%), Gaps = 6/324 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A++   +
Sbjct: 12  ILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQRLSAKD---A 68

Query: 71  PASA--PL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           PA    P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  +
Sbjct: 69  PARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMMKLRGGVDV 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D      +++SH++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSA
Sbjct: 129 LVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I +LA+    +  +V +A  N     +  +   V    +   +  ++     +  
Sbjct: 189 TFSDEIKSLAEKLLNNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMIGRDNWQQV 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG
Sbjct: 249 LVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHR 331
           +D+ +L  V++ EL +  E+ +HR
Sbjct: 309 LDIEELPHVVNYELPNVAEDYVHR 332


>gi|229102742|ref|ZP_04233441.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
 gi|229115630|ref|ZP_04245035.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228667772|gb|EEL23209.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228680674|gb|EEL34852.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
          Length = 389

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638]
 gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 421

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 181/341 (53%), Gaps = 13/341 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+     +PA
Sbjct: 22  EALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHYLLS-----NPA 76

Query: 73  SA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            A      P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 77  MADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTPQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 DRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 357


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 196/382 (51%), Gaps = 16/382 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 140 FPDYVMKEIKRQGYKVPTPIQAQGWPIAMSGHNFVGIAKTGSGKTLGYILP-AIVHINNQ 198

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              S    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 199 QPLSRGEGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 257

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  IL      R+ LM+
Sbjct: 258 EIVIATPGRLIDFLAAGATNLKRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMW 317

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +   +D++  + ++L   Y 
Sbjct: 318 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVIEICDENDKETKLKSLLSQIYD 377

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 378 TGENPGKIIIFVETKRRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 437

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR+  KG S     +N  ++++ L
Sbjct: 438 ATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRSNTKGTSYAFFTRNNAKQSKAL 497

Query: 360 ---FREANVSVVWEPAPSVEAI 378
               +EAN  +     P +E++
Sbjct: 498 LEVLKEANQEI----CPGLESM 515


>gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 467

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+  +  
Sbjct: 12  ILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADMPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            A    AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  -AKRVRALILTPTRELAVQVEDNIAK-YAKYLPLTSMAMYGGVDAAPQKQRLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + A++
Sbjct: 189 SKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKD 350


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 195/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    I++
Sbjct: 67  KVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FSAT 
Sbjct: 127 GTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATT 186

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
             A +  +     KD   + + S +   S   ++ +    +     ++N +L     + A
Sbjct: 187 GGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVAARG
Sbjct: 247 IIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++V++ ++  + ++ +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 365


>gi|242009038|ref|XP_002425300.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212509065|gb|EEB12562.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 1014

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 188/366 (51%), Gaps = 11/366 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 361 EILKKNGFEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLEET 419

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+A+ + PTREL +Q+G++ +       + V    GG  +  +  +L+ GA IVV TP
Sbjct: 420 DGPIAIIMTPTRELCMQIGKDCKKFSKSVSLKVVCVYGGTGISEQIAELKRGADIVVCTP 479

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 480 GRMIDMLAANSGRVTNLLRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 539

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGAK 245
              +  LA+      + V +   +    D++   V++   D D   + +L     Y    
Sbjct: 540 PRQMEALARRILTKPIEVQVGGRSVVCKDVEQHVVVL---DEDKKFLKLLELLGIYQNQG 596

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVF   + S     K L +  +  ++L G + Q +R + +   + G+ ++ IAT VAA
Sbjct: 597 SVIVFVDKQESADDLLKELMKASYPSMSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAA 656

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG++   I    +R A  + R   +
Sbjct: 657 RGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGVAYTFITPEQERYAGEIIRALEL 716

Query: 366 SVVWEP 371
           S V  P
Sbjct: 717 SSVAVP 722


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 183/351 (52%), Gaps = 3/351 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  +   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +     
Sbjct: 267 KAIRKNEFTQPTPIQAQAVPAALNGRDIIGIAKTGSGKTAAFIWPMLVHIMDQRE-LKAG 325

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL+ Q+ +E +       + V  C GG S   + + L++GA IVV TP
Sbjct: 326 DGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAEIVVATP 385

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    
Sbjct: 386 GRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKR 445

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIV-NILRYHGAKNAIVF 250
           +  LA++   D VR+        ++D+    ++      + N ++ N++ +  A + ++F
Sbjct: 446 VEKLARDVLMDPVRIVQGDVGEANTDVTQHVIMFHNPGGKWNWLLQNLVEFLSAGSLLIF 505

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + + +       L    F V+ L G++ Q ER+  +   +       +ATDVAARG+D+
Sbjct: 506 VTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVAARGLDI 565

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           P ++ VI+ +++ + +   HR GRTGRAG KG +  ++ +  +  +  L R
Sbjct: 566 PHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFSGHLVR 616


>gi|117919411|ref|YP_868603.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611743|gb|ABK47197.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 443

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/335 (33%), Positives = 181/335 (54%), Gaps = 5/335 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G  + T VQ+  +   L  +DVL  +QTGSGKT+AFGL L   +  + +  S  A    A
Sbjct: 35  GLKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLLQAIHQQLESVSSSACKAQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           L + PTRELA QV   L+ L  +   V   + +  GG++   +  +L     ++V TPGR
Sbjct: 95  LVLVPTRELAQQVTMALQALATQLSPVPLNIQLLCGGIAQEEQLVELTAKPQLIVATPGR 154

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D      +++  +K +VLDEAD +L++GF  D++ ++   PK+++ L+FSAT+  A+ 
Sbjct: 155 LLDLCTQSHISLDSIKYLVLDEADRLLEMGFWPDVQKLMAMMPKRKQTLLFSATLPEALD 214

Query: 195 TLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           +LA K    +  RV  ++ N   +DI+ R  LV    +  A++ +L+ +     +VF S 
Sbjct: 215 SLAGKLLTNNPQRVEASTRNAVAADIEERLYLVNKGSKAQALIALLKQYRWPQVLVFISA 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R       K L +      AL GE  Q  RS  L   +  R +V +ATD+ ARGI +  L
Sbjct: 275 RDDADAIAKRLLKAGINAAALHGEKDQTVRSQTLADFKAHRIQVVVATDLMARGIHVDAL 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +VI+ +L ++    +HR GRT RAG  G+++ ++
Sbjct: 335 PVVINLDLPTSAPVYVHRIGRTARAGANGLAISLV 369


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 27/390 (6%)

Query: 5   ENIPQ------------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +N+PQ            ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT 
Sbjct: 189 DNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTA 248

Query: 53  AFGLALASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF + + +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  
Sbjct: 249 AFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAY 308

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG SV  +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   I
Sbjct: 309 GGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSI 368

Query: 170 EFILDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           E ++D        +R+ LMFSAT    +  LA+ +  + + + +       SD++     
Sbjct: 369 EKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYE 428

Query: 226 VALSDRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           VA + + + +  IL            +VF   +         L+E+ +   ++ G+  Q+
Sbjct: 429 VARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQR 488

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +
Sbjct: 489 QREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNR 548

Query: 342 G--MSVFVIPQNMQRRAE--RLFREANVSV 367
           G   S F   ++   R +  R+ ++AN SV
Sbjct: 549 GRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
 gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
          Length = 713

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 189/352 (53%), Gaps = 15/352 (4%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 291 QCFAEYPDMLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 349

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T      R +   A + L +APTRELA+Q+  E+   Y+  G+      GG   + +  D
Sbjct: 350 TEYQSTPRGTRGGANV-LVLAPTRELALQIEMEVN-KYSFRGMKAVCVYGGGDRNMQISD 407

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKK 179
           L+ GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I + +LD  P  
Sbjct: 408 LERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRP-D 466

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSD---RDNA 234
           R+ +M SAT  P +  LA++Y K+ ++V + S +    HS    + V+  + D   + N 
Sbjct: 467 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHS---VKQVIKLMEDDMAKFNT 523

Query: 235 IVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           I + ++        I+FC  +      +  L    F    + G   Q +R  A+  ++ G
Sbjct: 524 ITSFVKNMSDTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSG 583

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             R+ +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+
Sbjct: 584 VVRILVATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSI 635


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 181/340 (53%), Gaps = 16/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP---- 75
           Y   TS+Q   +   +  +D++  A+TGSGKT+AF L +   +LA+     P SAP    
Sbjct: 42  YEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ-----PKSAPGEGM 96

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           +AL ++PTRELA+Q+  E +      G+  A   GG S+  +  +L+ GA IVV TPGR+
Sbjct: 97  IALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRM 156

Query: 136 CDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
            D +      I++L+ V   VLDEAD M D+GF   I  I+DS    R+ +MFSAT  P 
Sbjct: 157 IDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPK 216

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVF 250
           +  +AK      + +     +   SDI+    +     R   ++ +L   YH  +  ++F
Sbjct: 217 VENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQ-ILIF 275

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + + +     + L+   +Q ++L G   Q +R   +   ++    + IAT +A+RG+D+
Sbjct: 276 TNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDI 335

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            DL LV++ +   + E+ +HR GRTGRAG +G +  F+ P
Sbjct: 336 KDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITP 375


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 181/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  KD   V+     R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 181/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  KD   V+     R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|229017434|ref|ZP_04174336.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
 gi|229023607|ref|ZP_04180100.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228737643|gb|EEL88146.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228743856|gb|EEL93956.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
          Length = 389

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 190/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|308807707|ref|XP_003081164.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
            tauri]
 gi|116059626|emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus
            tauri]
          Length = 2729

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/348 (33%), Positives = 176/348 (50%), Gaps = 28/348 (8%)

Query: 19   GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-- 76
            G+ + TSVQ+A L   ++  DVL  A+TGSGKTV F       LL   +R + A AP   
Sbjct: 2221 GFTHATSVQDATLPHIMQGLDVLARAKTGSGKTVGF-------LLPAIERLARAGAPQRG 2273

Query: 77   ---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTP 132
                L I+PTRELA Q+G E + L +       V  GG +++ ER+ L+      ++ TP
Sbjct: 2274 NVSCLVISPTRELASQIGEEAKSLLSFHPFKCQVVFGGTNINSERKRLKTEPVEFLIATP 2333

Query: 133  GRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
            GRL DH     L     +L  +VLDEAD++LD+GFR  +E IL   P +R+ L+FSAT+ 
Sbjct: 2334 GRLIDHFESGDLARACQNLDVLVLDEADQLLDMGFRPSLEKILSFLPNQRQTLLFSATVP 2393

Query: 191  PAITTLAKNYQK------DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
              +  +A N  +      D V  +  + N Q   +    ++    D    +  ++  H A
Sbjct: 2394 KTVHQIAANALRPGHQYIDCVGEDAPATNLQ---VKQSLIMAPFHDHLTLMTQVIERHQA 2450

Query: 245  KNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +      +VF +T  S    ++        V  +    SQ  R+ A    R  RA V  +
Sbjct: 2451 EEQNHKIMVFFTTARSTQLASETFEAMGKPVFEIHSRKSQAVRTKAADKFRASRAAVMFS 2510

Query: 301  TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +DV ARG+D PD+ +VI   + SN E  +HR GRTGRAG+ G  + ++
Sbjct: 2511 SDVTARGMDFPDVTMVIQIGVPSNREQYIHRLGRTGRAGKTGKGLLML 2558


>gi|269955100|ref|YP_003324889.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303781|gb|ACZ29331.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 503

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 179/366 (48%), Gaps = 4/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  +L+ERG  +   +Q A L   L  KDVL   +TGSGKTVAF L + + L   
Sbjct: 7   GLPMPVVASLAERGITSPFPIQAASLPDSLAGKDVLGRGRTGSGKTVAFALPVVTRLAGG 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A   L +APTRELA+Q+      L    G+   V  GGV+  R+   L  G 
Sbjct: 67  RRAPRRPRA---LILAPTRELALQIDATTAPLAKVMGLRTTVVFGGVAQSRQVTALDAGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++  PGRL D +  + L +  ++  VLDEAD M DLGF   ++ ++D +P K + L+F
Sbjct: 124 DILIACPGRLEDLLNQRLLTLDGIEITVLDEADHMADLGFLPGVKRLMDRTPTKGQRLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K Y    V  ++         + +  + VA +     +V  L   G  
Sbjct: 184 SATLDNGVDVLVKRYLHQPVTHSVDEAAAPPPLMTHHVLAVADAAAKRDVVRQL-AAGTG 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K L       V L G L Q  R   L     G  +V +ATD+AA
Sbjct: 243 RRVLFMRTKHHAKKLAKQLTLDGVPAVDLHGNLGQGARERNLAAFTSGDVKVLVATDIAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ELV+H +  +  +  LHRSGRT RAG  G  V ++    ++    L R+A +
Sbjct: 303 RGIHVDDIELVVHVDPPAEHKAYLHRSGRTARAGSGGDVVTIMLPEQRKDVADLTRKAKI 362

Query: 366 SVVWEP 371
           +   +P
Sbjct: 363 TAQPQP 368


>gi|154345772|ref|XP_001568823.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066165|emb|CAM43955.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 654

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 196/366 (53%), Gaps = 10/366 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            ++     E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +      
Sbjct: 169 HIVSALEQEFKFTELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSG-- 226

Query: 69  FSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGAH 126
           F P++   A+ I PTREL +Q+ G  L+ L    G V    CIGG S ++E   L NG  
Sbjct: 227 FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGQSRNQEGFKLANGVM 286

Query: 127 IVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV +PGRL DH++     +  +L  + +DEAD +LD GF +D+  I+   PK R+  +F
Sbjct: 287 IVVASPGRLLDHLKLTADWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQTFLF 346

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+ ++ K  V +++ S+  + +   ++   V+ A   R   + + +R +
Sbjct: 347 SATQTTRVEQLARISFHKTPVFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFVRKN 406

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V   TD
Sbjct: 407 LKKKIIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLFTTD 466

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           VAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +     L+ 
Sbjct: 467 VAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-ELFLRYLYD 525

Query: 362 EANVSV 367
           +ANV V
Sbjct: 526 DANVRV 531


>gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 467

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+  +  
Sbjct: 12  ILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADMPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            A    AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  -AKRVRALILTPTRELAVQVEDNIAK-YAKYLPLTSMAMYGGVDAAPQKQRLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + A++
Sbjct: 189 SKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKD 350


>gi|145350269|ref|XP_001419535.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579767|gb|ABO97828.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 545

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 181/350 (51%), Gaps = 32/350 (9%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP--- 75
           G+ + T+VQ++ L   +R  DVL  A+TGSGKTV F       LL   +R +   AP   
Sbjct: 16  GFTHATAVQDSTLPHIMRGLDVLARAKTGSGKTVGF-------LLPAIERLAKQGAPRKG 68

Query: 76  --LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTP 132
               L I+PTRELA Q+G E + L         V  GG +++ ER+ L + G   +V TP
Sbjct: 69  DVSCLVISPTRELASQIGEEAKSLLTYHPFNCQVVFGGTNINSERKRLTSQGVEFLVATP 128

Query: 133 GRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           GRL DH     L     +L  +VLDEAD++LD+GFR  +E IL   P +R+ L+FSAT+ 
Sbjct: 129 GRLIDHFESSNLARACQNLDVLVLDEADQLLDMGFRPSLEKILSYLPTQRQTLLFSATVP 188

Query: 191 PAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAKNA 247
             +  +A N  +   + ++   ++   +++  +  L+  S  D+   +   +  H A+  
Sbjct: 189 KTVHQIAANALRPGHQYIDCVGDDAPATNLQVKQSLIVASFHDHLTLMTQAIEEHQAEEP 248

Query: 248 ----IVFCSTRASVSRFTKVLAEHLFQ-----VVALSGELSQQERSNALQMMRDGRARVC 298
               +VF  T  S       LA  +F+     V  +    SQ  R+ A    R+ RA V 
Sbjct: 249 NHKIMVFFPTARSTQ-----LASEMFEACGKPVFEIHSRKSQAVRTKAADKFREARAAVM 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +++DV ARG+D PD+ +VI   + S  E  +HR GRTGRAG+ G  + ++
Sbjct: 304 MSSDVTARGMDFPDVTMVIQIGVPSAREQYIHRLGRTGRAGKTGKGLLML 353


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 180/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRY 241
           +FSAT+    +   A+    D V+V+     R+   I+ +     +   +   +   +  
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHPDSNEHKIKLLARFIET 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +AT
Sbjct: 246 EEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 306 DVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 174/336 (51%), Gaps = 6/336 (1%)

Query: 10   VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            ++ + + +  Y   T +Q+  +      +D++  AQTGSGKT AF L + + +L +    
Sbjct: 1023 ILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPILNHILDKGYEL 1082

Query: 70   SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 P A+ ++PTRELAVQ+  E       + + + +  GG SV  +   +  G HI++
Sbjct: 1083 E-IGKPQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQNESITKGCHILI 1141

Query: 130  GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFS 186
             TPGRL D +    +     + VVLDEAD MLD+GF + +  I+ + P   K+ + LMFS
Sbjct: 1142 ATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKII-THPTMRKEHQTLMFS 1200

Query: 187  ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
            AT    I  +A  + +D V V I       SD+      V   ++   ++ ILR  GA  
Sbjct: 1201 ATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKFNKRAKLMEILR-DGADG 1259

Query: 247  AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
             IVF  T+          +E  F   ++ G+  Q +R  AL+  + G+ +V IAT VA+R
Sbjct: 1260 TIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKMKVLIATSVASR 1319

Query: 307  GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            G+D+ ++  VI+ ++ S  ++ +HR GRTGR G  G
Sbjct: 1320 GLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNG 1355


>gi|149275912|ref|ZP_01882057.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149233340|gb|EDM38714.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 443

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 213/423 (50%), Gaps = 51/423 (12%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + I  A+++ G+   T +QE  + P L  +D+   A+TG+GKT A+ L + 
Sbjct: 3   KSFEEFNLNRQILNAVADAGFTVATPIQEKAIAPVLSGQDLFGIAETGTGKTAAYVLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++   +  AL +APTRELA+Q+   ++       +   V  GG+    +  
Sbjct: 63  MQL-----KYAQGDSARALILAPTRELAMQITEHIKVFSTYLDLRTVVIFGGIGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGR  D      +N  +LK +VLDEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 QIKAGVDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVN 237
           R+ L+FSAT+S  +  +A ++ K    V +A +         + V   L +  N    +N
Sbjct: 178 RQNLLFSATMSSLVQKIAGDFLKHPTIVEVAEQATPA-----QTVTQTLYEVPNFKTKIN 232

Query: 238 ILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVV----------ALSGELSQQ 281
           +L+ H  KN       I+FC         TK +A+++F  +           +     Q 
Sbjct: 233 LLQ-HLMKNDEEFKRVIIFCK--------TKTVADNIFSFIERRFGADAVRVIHANKGQN 283

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R N++   ++G  RV +ATDVA+RGID+ ++  VI+ ++    E+ +HR GRTGRA  K
Sbjct: 284 TRINSINDFKEGNIRVLVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRALSK 343

Query: 342 G--MSVFVIPQNMQ-RRAERLFRE--------ANVSVVWEPAPSVEAI-RERDAQRILQD 389
           G  ++ F   +    ++ E+L R+        A V V   P    +AI R  D Q+  +D
Sbjct: 344 GDALTFFTDAEKYYIKKIEKLIRQEIPVVPLPAEVFVEETPYEERQAINRAIDDQKRKED 403

Query: 390 PLF 392
           P F
Sbjct: 404 PTF 406


>gi|307132128|ref|YP_003884144.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306529657|gb|ADM99587.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 450

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 175/334 (52%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  L
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRIL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  +   + A T + +A   GGV+             +VV T GRL  +
Sbjct: 81  ILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQY 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLA 197
           I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI   A
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFA 200

Query: 198 KNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +    D + V      R+   I    YRA  V    +   + ++L+      +IVF   R
Sbjct: 201 ERLLNDPIEVEAEPSRRERKKILQWYYRADDV--QHKTALLSHLLKQPDVTRSIVFVRKR 258

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+ 
Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDILDVS 318

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 319 HVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLV 352


>gi|123441353|ref|YP_001005340.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088314|emb|CAL11105.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 441

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILTEPVELEADPSRRERKKIQQWYYRAD--NIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 189/357 (52%), Gaps = 11/357 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 291 VSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 350

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 351 MQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 410

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFS 186
           PGRL D I RGK + +S ++ +VLDEAD MLD+GF  ++  ++ S    S ++R+ LMFS
Sbjct: 411 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFS 469

Query: 187 ATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  +A ++ K D + + +       SD++   V V    + + ++ +LR  G +
Sbjct: 470 ATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRATGNE 529

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S       L +      ++ G+  Q+ER  AL   R G   V +AT VAA
Sbjct: 530 RTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRLGHCPVLVATSVAA 589

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           RG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V F  P++    A  L +
Sbjct: 590 RGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNPESDTPLARSLVK 646


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 182/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/377 (29%), Positives = 195/377 (51%), Gaps = 14/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + L    Y + T +Q   L   +  +D+L  A+TGSGKT+AF L +   +L + 
Sbjct: 321 LPRRVLDVLRALKYDDPTPIQAQALPVIMSGRDMLGIAKTGSGKTLAFLLPMLRHVL-DQ 379

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R       +AL ++PTRELAVQ   E +       + +A   GG  +  +   L+    
Sbjct: 380 RRVRQGEGCIALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHLKRSVE 439

Query: 127 IVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D +   RGK  N   +  VVLDEAD M D+GF   +  ILD+    R+ +
Sbjct: 440 IIVCTPGRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVMRILDNIRPDRQTV 499

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           MFSAT   A+  LA+   K  + + +   +     ++   +++   ++ N ++ +L  Y+
Sbjct: 500 MFSATFPRAMEVLARKILKKPIEIQVGGRSIVSDTVEQHVLVLEEQNKFNKLLELLGIYY 559

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + IVF   +         L  H +  + L G +SQ++R + ++  + G  ++ IAT 
Sbjct: 560 VQGSVIVFVHRQEKADMLLTNLMGHGYMSLPLHGAVSQEDRQSNIRDFKLGNVKILIATS 619

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+  L+LV++ +  ++ E+ +HR GRTGRAG KG +   + ++ ++ A  + + 
Sbjct: 620 VAARGLDVKSLKLVVNYDCPNHYEDYVHRCGRTGRAGNKGTAFTFVTKDDKQLAGHVIKA 679

Query: 362 --------EANVSVVWE 370
                    A++  VWE
Sbjct: 680 LELSSQEVPADLKAVWE 696


>gi|238759674|ref|ZP_04620834.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
 gi|238702102|gb|EEP94659.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
          Length = 441

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 183/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA   ++  +   +V++L+    + +I
Sbjct: 195 AIREFAERILNEPVELEADPSRRERKKILQWYYRAD--SIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLV 352


>gi|167464697|ref|ZP_02329786.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381282|ref|ZP_08055285.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154858|gb|EFX47129.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 438

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 173/324 (53%), Gaps = 11/324 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L + G +  T +Q+  +   L+  DV+  AQTG+GKT+AF L L   + A+     
Sbjct: 13  LTETLQKNGIITPTPIQKQAIPRILKGTDVIGKAQTGTGKTLAFILPLLQKIRADAPHIQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVV 129
                  L I PTRELA+Q+  EL+ L A    V V    GG  V  +   L+    IVV
Sbjct: 73  ------GLIITPTRELALQITAELKKLTAAMEQVRVLAVYGGQDVEGQMNKLRRNVQIVV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DHIR + +++S   A+VLDEAD+ML +GF  ++E IL      R+ L+FSAT+
Sbjct: 127 GTPGRLLDHIRRETIDLSRATALVLDEADQMLHIGFLGEVEEILAELSANRQTLLFSATM 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNA 247
              + +LAK +      V I  + RQ +  + R ++V  +DR     +  +L  +    A
Sbjct: 187 PKQVRSLAKRFMHQPETVEI--QARQITVKEIRQLVVETTDRAKQRVLCTLLDEYRPFLA 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T+       + L    +    L G+LSQ +R   ++  R+ R  + +ATDVAARG
Sbjct: 245 MVFCRTKRRAGTLNQALQAKGYISDELHGDLSQAKREQVMKKFREARLHILVATDVAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHR 331
           +D+  +  V + ++  + E+ +HR
Sbjct: 305 LDVEGVTHVFNYDIPHDAESYIHR 328


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 184/337 (54%), Gaps = 11/337 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +     ++D++  AQTGSGKT AF + + + +        P +A     
Sbjct: 180 YTVPTPVQKYSIPIVQAKRDLMACAQTGSGKTAAFLVPILNRVYETGPVPPPPNARRSQQ 239

Query: 75  -PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+AL +APTRELA+Q+  E +    ++ V +    GG S   + +DL+ G  ++V TPG
Sbjct: 240 FPVALILAPTRELAIQIYGEAQKFSYRSRVRICCVYGGASPRDQIQDLRRGCQLLVATPG 299

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSATI 189
           RL D +    + +  ++ +VLDEAD MLD+GF   I  I+  D+ P+   R+ LMFSAT 
Sbjct: 300 RLVDFMERGVIGLDSIRFLVLDEADRMLDMGFEPQIRRIVEEDNMPQVGIRQTLMFSATF 359

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-I 248
              I  LA+++  D V +++        +I      +  +D+  ++++++    +++  +
Sbjct: 360 PKDIQMLAQDFLDDYVHLSVGRVGSTSENIQQIVHWIDEADKRPSLLDLISAASSEDLFL 419

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +       L        ++ G+ +Q ER  AL   R GR  + +AT VAARG+
Sbjct: 420 IFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEALADFRAGRRPILVATAVAARGL 479

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P+++ VI+ +L S+ +  +HR GRTGRAG KG +V
Sbjct: 480 DIPNVKHVINFDLPSDIDEYVHRIGRTGRAGHKGTAV 516


>gi|212721126|ref|NP_001132058.1| hypothetical protein LOC100193470 [Zea mays]
 gi|194693318|gb|ACF80743.1| unknown [Zea mays]
          Length = 506

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/351 (35%), Positives = 191/351 (54%), Gaps = 16/351 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + ++L  +G  +L  +Q    +  L   D++  A+TG GKT+AF L +  +L+   
Sbjct: 128 ISESLRQSLRSKGIKSLFPIQATTFDLVLDGSDLVGRARTGQGKTLAFVLPILESLVNGA 187

Query: 67  DRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR-ERRDL 121
           ++ S        P  L + PTRELA QV  + E+ Y  T  + A C+ G S +R +   L
Sbjct: 188 NKASRRTEHGRTPSVLVLLPTRELANQVHADFEF-YGATFGLSACCVYGGSPYRPQEMAL 246

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           + G  IVVGTPGR+ D I    LN+  LK  VLDEADEML++GF DD+E IL       K
Sbjct: 247 RRGVDIVVGTPGRVKDFIVKGTLNLKCLKFRVLDEADEMLNMGFVDDVELILGKVEDATK 306

Query: 180 RRMLMFSATISPAITTLAKNYQK-DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
            + L+FSAT+   +  L+  + K D   V++      +  + + + A+    + R   I 
Sbjct: 307 VQTLLFSATLPEWVNKLSMRFLKVDRKTVDLVGNEKLKASASVKHLALPCNKAARAQVIP 366

Query: 237 NILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +I+R Y      I+F  T+ S S  + ++        AL G+++Q +R   L   R G+ 
Sbjct: 367 DIIRCYSHGGRTIIFTETKDSASELSGLIHGSR----ALHGDVAQAQREVILAGFRSGKF 422

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +V +AT+VAARG+D+ D++L+I  E   + E  +HRSGRTGRAG  G++V 
Sbjct: 423 QVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVI 473


>gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60]
          Length = 424

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 13  PMVI-KALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTH-- 69

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ R L
Sbjct: 70  ---PAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRVL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           + G  I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 127 EQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTAQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L
Sbjct: 187 RLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 247 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILV 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 307 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGKSI 352


>gi|238793781|ref|ZP_04637402.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
 gi|238726845|gb|EEQ18378.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
          Length = 441

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILNEPVELEADPSRRERKKIQQWYYRAD--NIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLV 352


>gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 436

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 180/342 (52%), Gaps = 9/342 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   +  
Sbjct: 19  LVLKGLEDKGFHNCTPIQALALPVMLSGHDIAGQAQTGTGKTIAFLTATFNHLL---ETA 75

Query: 70  SPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +PA    + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAILDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            I++GT GR+ D  + + + ++ ++ VVLDEAD M DLGF  DI F+     +P +R  L
Sbjct: 136 DILIGTCGRIIDFYKQRVIELNSIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSL 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVIVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSI 357


>gi|332162701|ref|YP_004299278.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606806|emb|CBY28304.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666931|gb|ADZ43575.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860494|emb|CBX70798.1| ATP-dependent RNA helicase srmB [Yersinia enterocolitica W22703]
          Length = 441

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILTEPVELEADPSRRERKKIQQWYYRAD--NIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 443

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 109/338 (32%), Positives = 175/338 (51%), Gaps = 5/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T VQE  +   L  +DV+ +A TG+GKT AF L L   +     R     
Sbjct: 46  AVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFERI----GRAKRPG 101

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +P AL ++PTRELA Q+      L   +   +   +GG     +   L  G  ++V TPG
Sbjct: 102 SPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDRGIDVLVATPG 161

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    + +  ++ +VLDEAD MLD+GF   ++ ++ ++P  R+ L+FSAT+   +
Sbjct: 162 RLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTLLFSATLDRKV 221

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +  KD   V ++ +      ID   + V    +   +  +L+  G+K  IVF  T
Sbjct: 222 MQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPELLRLVLQQRGSKRVIVFTDT 281

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      T  L    F+  ++  + +Q +R  AL+    G   V +ATDV ARGID+ ++
Sbjct: 282 KTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVATDVLARGIDVSNI 341

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           E V++ +L  +PE+ +HR GRTGRAG  G ++ FV P+
Sbjct: 342 EYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPE 379


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 181/340 (53%), Gaps = 16/340 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP---- 75
           Y   TS+Q   +   +  +D++  A+TGSGKT+AF L +   +LA+     P SAP    
Sbjct: 529 YEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ-----PKSAPGEGM 583

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           +AL ++PTRELA+Q+  E +      G+  A   GG S+  +  +L+ GA IVV TPGR+
Sbjct: 584 IALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRM 643

Query: 136 CDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
            D +      I++L+ V   VLDEAD M D+GF   I  I+DS    R+ +MFSAT  P 
Sbjct: 644 IDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFSATFPPK 703

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVF 250
           +  +AK      + +     +   SDI+    +     R   ++ +L   YH  +  ++F
Sbjct: 704 VENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQ-ILIF 762

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + + +     + L+   +Q ++L G   Q +R   +   ++    + IAT +A+RG+D+
Sbjct: 763 TNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDI 822

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            DL LV++ +   + E+ +HR GRTGRAG +G +  F+ P
Sbjct: 823 KDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITP 862


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 179/351 (50%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E +++ GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 271 NLRPLLLENIAKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDN 330

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +   + + + 
Sbjct: 331 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQLKTIH 390

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKK 179
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++    +P  
Sbjct: 391 SGCHILVATPGRLLDFVEKGKVVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTT 450

Query: 180 RRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ LMFSAT    I  LA  +  + + V + S    ++D+    + V   ++   +V  
Sbjct: 451 DRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEM 510

Query: 237 --NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              IL     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 511 CEEILINAEDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGV 570

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + +AT VAARG+D+  + +V++ +L    +  +HR GRTGR G +G+S+
Sbjct: 571 YNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSI 621


>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
 gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/352 (35%), Positives = 181/352 (51%), Gaps = 9/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E GY   T VQ   +   L  KD+L SA TG+GK+ AF L  A   L +  R  P  
Sbjct: 17  ALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLP-ALQHLDDFPRRDPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  E   L   T   V    GG+S       L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAIQVADEARELAKYTHHKVFTITGGISYQEHADILARTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++  +FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +     +   +  ++      R+   I    +RA   +L  +   + +IL  +  + AIV
Sbjct: 195 VDGFTADLLNEPAKIVAEPSRRERKKITQWYHRAD--SLPHKIELLKSIL-TNQTERAIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  ++     L         L GE+ Q+ R+NA+   RDG+  V IATDVAARGID
Sbjct: 252 FVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNVLIATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           LPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q+  ER+ R
Sbjct: 312 LPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMMERVGR 363


>gi|71022799|ref|XP_761629.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
 gi|74699660|sp|Q4P331|IF4A_USTMA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|46101182|gb|EAK86415.1| hypothetical protein UM05482.1 [Ustilago maydis 521]
          Length = 411

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 163/314 (51%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q   + P ++  DV+  AQ+G+GKT  F +A+         R  P+  A  A
Sbjct: 57  GFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQ-------RIDPSIKAVQA 109

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  L     +    CIGG +V  +   L  GA +VVGTPGR+ D
Sbjct: 110 LILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYD 169

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  +      LK   LDEADEML  GF+D +  +    P+  + ++ SAT+   +  + 
Sbjct: 170 MINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQCVLLSATMPQEVLEVT 229

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  +      I    V V   D + + + ++        A++FC+TR  
Sbjct: 230 KKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLCDLYETVTITQAVIFCNTRRK 289

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 290 VDWLTDKLTSREFTVSAMHGDMEQAQREVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 349

Query: 317 IHAELSSNPENLLH 330
           I+ +L SN EN +H
Sbjct: 350 INYDLPSNRENYIH 363


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + +   P 
Sbjct: 288 KAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQRE-LKPG 346

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA IVV TP
Sbjct: 347 DGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGAEIVVATP 406

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    
Sbjct: 407 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKR 466

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 467 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 525

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +A        L       + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 526 FVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 585

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 586 IPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 637


>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 942

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 195/359 (54%), Gaps = 7/359 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      A
Sbjct: 294 EVLRKLGFEKPTPIQCQAIPAVMSGRDLIGIAKTGSGKTLAFILPMFRHVL-DQPPLEEA 352

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+A+ ++PTREL +Q+G++++  +AK+  + AVC+ GG  +  +  +L+ GA I+V T
Sbjct: 353 EGPIAIIMSPTRELCMQIGKDIK-KFAKSLNLRAVCVYGGTGISEQIAELKRGAEIIVCT 411

Query: 132 PGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 412 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSAT 471

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA 247
               +  LA+   K  V + +   +    +++   V++    +   ++ +L  Y    + 
Sbjct: 472 FPRQMEALARRILKKPVEIQVGGRSVVCKEVEQHVVVLEEDAKFFKLLELLGLYQELGSI 531

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG
Sbjct: 532 IVFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQGRVKLLIATSVAARG 591

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R +  + R   +S
Sbjct: 592 LDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYSGDIIRALELS 650


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
           SA   + ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  SAINCVIMSPTRELAQQIDQGMQGFAYYLDGVSCVAVYGGNDGNRYDQELKSLALGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI    +++S +   +LDEAD MLD+GF DDI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKLPATCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   I +I +    K  I
Sbjct: 191 MPAKIEELAKTLLKNPVEIKLAV-SKPAEKIQQTAYVCYETQKMGIIKDIFKAGDLKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V +    L         +  +L Q++R++ +   + G+  V +ATD+ +RGI
Sbjct: 250 IFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +
Sbjct: 310 DIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFV 349


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 185/341 (54%), Gaps = 10/341 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   T +Q       ++ +D++  A+TGSGKT+  G  L   +L + 
Sbjct: 164 FPSEILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTL--GYLLPGFILLKR 221

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            + +    P  L ++PTRELA Q+  E    + ++  + + C+ GG     + R+L+ GA
Sbjct: 222 LQHNSREGPTVLVLSPTRELATQIQDEA-IKFGRSSRISSTCLYGGAPKGPQLRELERGA 280

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM+
Sbjct: 281 DVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRRQTLMY 340

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           +AT    +  +A +   + V+VNI + ++   +  I     ++   ++   +  ILR   
Sbjct: 341 TATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQILRSQD 400

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    +  + L+   +   A+ G+ SQ ER + L   R GR  V +AT
Sbjct: 401 PGSK-IIIFCSTKRMCDQLARNLSRQ-YGASAIHGDKSQSERDSVLNDFRSGRCPVLVAT 458

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           DVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G
Sbjct: 459 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATG 499


>gi|229109595|ref|ZP_04239184.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
 gi|228673843|gb|EEL29098.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
          Length = 389

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 187/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++      A++   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKVAEDAARDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|154487146|ref|ZP_02028553.1| hypothetical protein BIFADO_00986 [Bifidobacterium adolescentis
           L2-32]
 gi|154085009|gb|EDN84054.1| hypothetical protein BIFADO_00986 [Bifidobacterium adolescentis
           L2-32]
          Length = 723

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 180/388 (46%), Gaps = 31/388 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P  +   L+  G      +Q   L   L  +D+L   +TGSGKT+AF + L + L    
Sbjct: 30  VPGPLVRVLAADGKKTAFPIQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVARLGEVD 89

Query: 63  --LAEN---------------------DRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
               EN                     D F P   P  L +APTRELA Q+   L  L  
Sbjct: 90  ADEYENMSQFRHEVEQVRKGHAEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAQ 147

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             G+      GGV   R+ RDL+ GA IVV  PGRL D +    L +  ++  V+DEADE
Sbjct: 148 MYGMTTTTVYGGVRYARQIRDLRAGADIVVACPGRLEDLLEQHALTLEKVEVAVIDEADE 207

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           M D+GF   ++ +L       ++++FSAT+   +  +   +  D    ++ S      ++
Sbjct: 208 MADMGFLPPVKRLLGQVSFDAQIMLFSATLDHGVDEVVNTFLTDPKIHSVDSATAAVDEM 267

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            +        DR   +  +    G +  I+F  T+    +  K L ++      L G LS
Sbjct: 268 THHVFETTQGDRHELVRTLASGKGRR--ILFTRTKFQTQKLAKDLTKNGIPAAELHGNLS 325

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R   L     G   V +ATDVAARGID+  +ELV+  E   +P++ LHRSGRT RAG
Sbjct: 326 QNQRDRNLAAFESGDVNVMVATDVAARGIDVSGVELVVQVEPPEDPKSFLHRSGRTARAG 385

Query: 340 RKGMSVFVIPQNMQRRAERLFREANVSV 367
             G  V ++  N +RR  R+  EA + V
Sbjct: 386 HSGDVVTIVLPNQRRRTRRMLHEAGLKV 413


>gi|320333020|ref|YP_004169731.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319754309|gb|ADV66066.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 520

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/392 (34%), Positives = 205/392 (52%), Gaps = 47/392 (11%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ   +   L  +DV+ +A+TGSGKT+AF +  A+  L    R      P  L I PT
Sbjct: 62  TPVQAGAIPALLAGRDVITTARTGSGKTLAFLIPAAARGLGV--RAVTGMRPEVLIITPT 119

Query: 84  RELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           RELAVQ   V REL       G+      GG++  + R +  +G  ++ GTPGRL D I 
Sbjct: 120 RELAVQIRDVAREL-------GMSAGRITGGITPGQTRSE-ASGKGVITGTPGRLRDLIL 171

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-----PKKRRMLMFSATISPAITT 195
            + LN++ ++ +VLDEADE+L LGF  D+  IL ++      +  ++ M SAT   AI  
Sbjct: 172 RRELNLADIRYIVLDEADELLSLGFLRDVSDILGAAQAQVGARHPQIAMASATFPAAIRK 231

Query: 196 LAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNI------------- 238
           +A+ + +D  R+++A    +  R  +D D   VL   +   + ++N              
Sbjct: 232 VAEQFMRDPERIDVAPSSATPERNAADAD---VLSGATGATHLLMNTTREEVMHIAAAKA 288

Query: 239 ---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ--VVALSGELSQQERSNALQMMRDG 293
              LR  G    ++F  T+  V R  + L   L    V  L G + Q++R   +  +R+G
Sbjct: 289 RAALREPGG-CVVIFSRTKYLVKRRAEQLGRLLPDELVSPLEGNMDQKKRERTMDALREG 347

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           R+RV IATD+A RGIDLP++ LVIH ++++  E+ +HRSGRT RAGR G + V +IP+  
Sbjct: 348 RSRVLIATDIAGRGIDLPEVRLVIHMDVAATAEDHVHRSGRTARAGRPGTNLVLLIPE-- 405

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           QR   +  R A    +  P    E + +RD Q
Sbjct: 406 QRGLWQSVRRALPPALHPPLTPEERLIDRDIQ 437


>gi|238789356|ref|ZP_04633142.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
 gi|238722499|gb|EEQ14153.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|311739401|ref|ZP_07713236.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305217|gb|EFQ81285.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 432

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 183/369 (49%), Gaps = 7/369 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ +   L   G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A      PA  P AL +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LARL-AGTGASKPAH-PRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  ++   LDEAD+M D+GF   +  +L  +P 
Sbjct: 119 RSLARPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPA 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           + + L+FSAT+   +  L + +  D V  + A        + +    V     R+  ++ 
Sbjct: 179 QGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERPARNEVVLR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I    G    I+F  T+  V R  K L         L G+  Q  R+ A++   DG   V
Sbjct: 239 IAARQG--KTIMFMRTKHGVDRQVKKLRRAGINAYPLHGDKGQGARTRAIEGFADGSIPV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  + ++    ++  +
Sbjct: 297 LVATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVD 356

Query: 358 RLFREANVS 366
            L ++A V+
Sbjct: 357 ALIKKAGVT 365


>gi|297828467|ref|XP_002882116.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327955|gb|EFH58375.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 739

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 178/341 (52%), Gaps = 7/341 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      I  A+ ++ Y   T++Q   L   L  +DV+  A+TGSGKT AF L +
Sbjct: 228 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 287

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S H + 
Sbjct: 288 IVHIM-DQPELQKDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 346

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   +  I+     
Sbjct: 347 KELKAGCEIVVATPGRLIDMLKIKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 406

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI  + V V  SD +     +
Sbjct: 407 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDI-TQVVNVIPSDAEKLPWLL 465

Query: 239 LRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  G     + +VF S +A+V      L  + F+V AL G+  Q  R   LQ  + G  
Sbjct: 466 EKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGIY 525

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
            V IATDVAARG+D+  L+ V++ +++ + +  +HR GRTG
Sbjct: 526 HVLIATDVAARGLDIKSLKTVVNYDIARDMDMHVHRIGRTG 566


>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
           [Ciona intestinalis]
          Length = 430

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 165/314 (52%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  KDV+  AQ+G+GKT  F +++   + A            AL
Sbjct: 75  GFEKPSAIQQRAIQPCIEGKDVIAQAQSGTGKTATFAISVLQKIDAS------LKQTQAL 128

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCD 137
            IAPTRELA Q+ + +  L     +    CIGG SV  E +  Q N   IVVGTPGR+ D
Sbjct: 129 VIAPTRELAQQIQKVVMALGDYESIHCHACIGGTSVRTEIQVFQTNPPQIVVGTPGRVFD 188

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  K L+ S +K  VLDEADEML  GF+D I  I  + P   ++++ SAT+   +  + 
Sbjct: 189 MINRKYLDTSKVKMFVLDEADEMLSRGFKDQIYEIFRTMPATIQVILLSATMPTDVLDVT 248

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             +  D +R+ +  E      I    V V   + + + + ++        A++F +TR  
Sbjct: 249 TCFMPDPIRILVKKEELTLEGIQQFYVFVEKEEWKLDTLCDLYETLTITQAVIFSNTRRK 308

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V AL G++ Q +R   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 309 VDWLTEELQRRDFTVSALHGDMDQGDREVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 368

Query: 317 IHAELSSNPENLLH 330
           I+ +L SN EN +H
Sbjct: 369 INYDLPSNRENYIH 382


>gi|323333197|gb|EGA74596.1| Dbp8p [Saccharomyces cerevisiae AWRI796]
          Length = 431

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 202/381 (53%), Gaps = 39/381 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +  T  +E+    
Sbjct: 13  LTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML-TKWSED---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++  DLQ   H ++ 
Sbjct: 68  -PSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIA 126

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           TPGRL  HI   G +    +   K +VLDEAD +L   F D +   + + P K  R+ L+
Sbjct: 127 TPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLL 186

Query: 185 FSATISPAITTLAKN-----------YQKDAV-RVNIASENRQHSDIDYRAVLVALSDRD 232
           F+ATI+  + +L              YQ ++V  V I S  +    I+Y  +LV    ++
Sbjct: 187 FTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK----IEY--ILVPEHVKE 240

Query: 233 NAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +L    +  K AI+F +   +     + L +   +V +L  ++ QQER+N+L   
Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R   AR+ IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G ++ FV  
Sbjct: 301 RANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQ 360

Query: 350 QNMQR------RAERLFREAN 364
           +++ R      R  +   EAN
Sbjct: 361 RDVSRIQAIEDRINKKMTEAN 381


>gi|312082520|ref|XP_003143478.1| ATP-dependent RNA helicase DDX41 [Loa loa]
 gi|307761359|gb|EFO20593.1| ATP-dependent RNA helicase DDX41 [Loa loa]
          Length = 657

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 197/403 (48%), Gaps = 28/403 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + +AL ++  +  T +Q   +   L  +D++  A TGSGKT+ F L L    L + 
Sbjct: 222 FPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLVMFCLEQE 281

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-------VVVAVCIGGVSVHRE 117
               F     P  L I P+RELA Q+   +E L+           + V +CIGG+ +  +
Sbjct: 282 VSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGGLPISEQ 341

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+GF ++I  I     
Sbjct: 342 ARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRTIFSFFK 401

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++    AV VN+        ++      V   ++   I++
Sbjct: 402 GQRQTLLFSATMPRKIQNFARSALVRAVIVNVGRAGAASLNVVQEIEYVRADEKLTRILD 461

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+   A   ++F   +  V    + L      V +L G   Q++R   +   R G   V
Sbjct: 462 CLQ-KTAPRVLIFAEKKNDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFRRGEKDV 520

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GRKGM+   I         
Sbjct: 521 LVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFIN-------- 572

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
              R A++SV+ +    + A+     Q +   PLFL  + G E
Sbjct: 573 ---RRADMSVLQD----LRALLLEAGQEL---PLFLRDMGGQE 605


>gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146]
 gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 424

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 13  PMVI-KALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTH-- 69

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ R L
Sbjct: 70  ---PAIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRVL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           + G  I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 127 EQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTAQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L
Sbjct: 187 RLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 247 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILV 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 307 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSI 352


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 178/353 (50%), Gaps = 14/353 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I E +   G+   T VQ+  +      +D++  AQTGSGKT A+ +     +LA+    
Sbjct: 217 AIVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPD 276

Query: 70  SPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L
Sbjct: 277 ATSSGDYGRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGGADVRTQLREL 336

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-----SS 176
           + G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++     SS
Sbjct: 337 ERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSS 396

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R+  MFSAT    I  LA+++ KD + + +      H  I      V  + +   + 
Sbjct: 397 RDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLY 456

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G  
Sbjct: 457 RVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGEL 516

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            + +ATDVAARG+D+  + LVI+ +L +N ++ +HR GRTGRAG  G ++  +
Sbjct: 517 PILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFV 569


>gi|91227745|ref|ZP_01261972.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269967907|ref|ZP_06181947.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
 gi|91188392|gb|EAS74687.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269827430|gb|EEZ81724.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
          Length = 402

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 183/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I +A+   GY   TS+Q+  +   LR ++++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  IADAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEKLSRGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   + IA  +   S+I      V    + + + ++L+ +     +V
Sbjct: 189 SNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHLLKENDWSQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG KG ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPYPADEYVHRIGRTGRAGAKGEAISLVSKD 350


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 186/362 (51%), Gaps = 20/362 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   L  +D++  AQTGSGKT AF + + + +        P +      
Sbjct: 370 YDKPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLVPILNQMYKHGVSAPPPNRPMNRR 429

Query: 74  --APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              PL L +APTRELA Q+  E +    ++ +  AV  GG + H + R+L  G H++V T
Sbjct: 430 KQYPLGLVLAPTRELATQIFEESKKFCYRSRMRPAVLYGGNNTHEQMRELDRGCHLIVAT 489

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRMLMFSA 187
           PGRL D I    + + +++ +VLDEAD MLD+GF   I  I++ S      +R+ LMFSA
Sbjct: 490 PGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEDSRMPVTGERQTLMFSA 549

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
           T   AI  LA ++    + + +        +I      V  + + + ++++L     +N 
Sbjct: 550 TFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWVEENIKRSHLLDLLSSISLQNE 609

Query: 247 -------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F  T+ +     + L  + + V ++ G+ SQ ER  AL++ R GR  + +
Sbjct: 610 GDAANSLTLIFVETKKAADSLEEFLYSYDYPVTSIHGDRSQDEREEALRLFRCGRCPILV 669

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+P+++ VI+ +L S  E  +HR GRTGR G  G +     +  +  A  L
Sbjct: 670 ATAVAARGLDIPNVKHVINFDLPSEVEEYVHRIGRTGRMGNLGTATSFFNEKNRNVANGL 729

Query: 360 FR 361
            R
Sbjct: 730 VR 731


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 3/344 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + +   P   P+ L 
Sbjct: 299 YTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQRE-LRPGDGPIGLI 357

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL++Q+  E +       + V  C GG S   + + L+ G  IVV TPGR+ D +
Sbjct: 358 LAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCEIVVATPGRMIDMV 417

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 418 KMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKRIERLARD 477

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
              D VR+     N  + DI     +    L   +  + +++++      +VF + +A  
Sbjct: 478 ILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSEGAVLVFVTKKADA 537

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L       + L G++ Q +R+  +   +     + +ATDVAARG+D+P +  V+
Sbjct: 538 ETVANNLIVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVV 597

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 598 NYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 641


>gi|330794200|ref|XP_003285168.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
 gi|325084889|gb|EGC38307.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
          Length = 815

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 202/390 (51%), Gaps = 33/390 (8%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           IF+++P  Q+  + L+E  +  LT +Q A L   L  +D+L +A+TGSGKT+AF + +  
Sbjct: 110 IFKDLPLSQLTQKGLTESKFYKLTDIQRASLPHTLCGRDILGAARTGSGKTLAFIIPVLE 169

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL    +R+S      A+ ++PTRELA+Q+   L+ +         + IGG +V +E+  
Sbjct: 170 TLW--RNRWSRNDGIGAIVLSPTRELAIQIFDVLKSVGKHHTFSAGLLIGGRNVTQEKEK 227

Query: 121 LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           + N  +I++ TPGRL  H+    G + S+LK +VLDEAD +LDLGF   +  IL++ PK+
Sbjct: 228 V-NAMNILIATPGRLLQHMDETYGFDCSNLKMLVLDEADRILDLGFSKSLNSILENLPKQ 286

Query: 180 RRMLMFSATISPAITTLAK----------NYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           R+ L+FSAT + ++  L +           Y+KD +    A +N   +       ++ L 
Sbjct: 287 RQTLLFSATQTKSVRDLVRLSLNEPEYISVYEKDII---TAPQNLTQT-----ICIIPLE 338

Query: 230 DRDNAIVNILRYHGAKNAIVF---CSTRASVSRFTKVL--AEHLFQVVALSGELSQQERS 284
            + N + + ++ H     IVF   C     V    ++L     LFQ   L G++ Q  R 
Sbjct: 339 MKLNMLYSFVKTHLTSKVIVFFASCKQIRFVYETFRLLNPGTSLFQ---LHGKMKQWTRL 395

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
              +     +A V  ATD+AARG+D P++E VI  +   + E  +HR GRT R    G +
Sbjct: 396 EVFEDFCKKKAGVLFATDIAARGLDFPEVEWVIQVDCPDDIETYIHRIGRTARNNATGQA 455

Query: 345 V-FVIPQNMQRRAERLFREANVSVVWEPAP 373
           +  ++P   +     L ++     V EP P
Sbjct: 456 ITILLPSEKEAMTALLEKQKMKYEVLEPNP 485


>gi|226328152|ref|ZP_03803670.1| hypothetical protein PROPEN_02043 [Proteus penneri ATCC 35198]
 gi|225203856|gb|EEG86210.1| hypothetical protein PROPEN_02043 [Proteus penneri ATCC 35198]
          Length = 385

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 170/315 (53%), Gaps = 8/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D+L SA TG+GKT AF L     LL    + S    P  L + PTRELA+QV  + + L
Sbjct: 4   RDILGSAPTGTGKTAAFLLPAIQHLLDYPRKKS--GPPRILILTPTRELAMQVAEQAKEL 61

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            A T + +A   GGV+             IVV T GRL  +I+ +  +   ++ ++LDEA
Sbjct: 62  CAHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVEMLILDEA 121

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQH 216
           D MLD+GF +DIE I   +  +++ L+FSAT+   A+   A+    + V +N     R+ 
Sbjct: 122 DRMLDMGFANDIETIAGETRWRKQTLLFSATLEGNAVIDFAQRILNEPVELNADPSRRER 181

Query: 217 SDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             I    Y A    L  +   +  +L+ +  K +IVF   R  V      L +   +   
Sbjct: 182 KKIQQFYYHAD--NLEHKTALLAALLKQNDVKKSIVFVRKRERVRELVTALEKQGIKCSY 239

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L GE++Q +R++A++ +  G+  V +ATDVA+RG+DL D+  V + +L    +  LHR G
Sbjct: 240 LEGEMAQTQRNDAIKRLESGKMNVLVATDVASRGLDLDDITHVFNFDLPRTADVYLHRIG 299

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAGRKG+++ ++
Sbjct: 300 RTGRAGRKGIAISLV 314


>gi|169602116|ref|XP_001794480.1| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
 gi|160706086|gb|EAT89141.2| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
          Length = 727

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 183/354 (51%), Gaps = 30/354 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDRFSPAS 73
           GY   ++VQ A +   L+ +D++  A TGSGKT +F L L   +     L  ++R   A 
Sbjct: 327 GYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQLPPLGPSNR---AD 383

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELA Q+  E     A  G   AV +GG S+  +   +++GA IV+ TPG
Sbjct: 384 GPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMRDGAEIVIATPG 443

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---------------- 177
           RL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P                
Sbjct: 444 RLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEKPDSDAAEDPNA 503

Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ +M++AT+  A+  +A+ Y +    V I +       ++ R   +   ++  
Sbjct: 504 MKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQRVEHIQGEEKRK 563

Query: 234 AIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             +  +   G      IVF + + +     + +    F  V L G  +Q++R  AL  +R
Sbjct: 564 KRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQEQREAALAQLR 623

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + R  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRAG+ G+++
Sbjct: 624 EHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAI 677


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/368 (32%), Positives = 193/368 (52%), Gaps = 13/368 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+ E +S+  +   T +Q+  +   + ++D++  AQTGSGKT AF L +   +L E
Sbjct: 200 NLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLHYIL-E 258

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE-RRD 120
           ND     F   + P+ L +APTRELA+Q+ +E      +T +  +   GGV+ + + RR 
Sbjct: 259 NDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQLRRM 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP 177
            + G HI++ TPG+L   +    +++  LK +V DEAD MLDLGF DD+E ++   D  P
Sbjct: 319 KEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPDMPP 378

Query: 178 KKRRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ +MFSAT    +   A  +  + + +        + D+    V VA  ++ + + 
Sbjct: 379 KGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFEKRDKLA 438

Query: 237 NILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             LR      +  +VF   +         L+ + F+ V L G   Q++R  AL   R  +
Sbjct: 439 EYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGFRSVTLHGGRYQEQREEALSAFRSNQ 498

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            RV +AT VAARG+D+  +  VI+ +L  + +  +HR GRTGR G +G +V F  P+   
Sbjct: 499 YRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYDPEQDL 558

Query: 354 RRAERLFR 361
             A+ L R
Sbjct: 559 NLAKDLVR 566


>gi|198470027|ref|XP_001355197.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
 gi|198147147|gb|EAL32254.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
          Length = 1243

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 193/364 (53%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L + +     
Sbjct: 550 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPN-LDEG 608

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V TP
Sbjct: 609 DGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCTP 668

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 669 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 728

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + I
Sbjct: 729 PRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESKFFKLLELLGIYQEAGSII 788

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 789 VFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 848

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 849 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSGC 908

Query: 369 WEPA 372
             PA
Sbjct: 909 LVPA 912


>gi|319427373|gb|ADV55447.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 432

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 175/328 (53%), Gaps = 11/328 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ+  +   L  +DVL  AQTGSGKT+AFGL L  ++L +  +        AL + PT
Sbjct: 43  TLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLLQSVLEQQAQ--------ALVLVPT 94

Query: 84  RELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           RELA QV   L+ +       + +    GGV +  +  +L     I+V TPGR+ D  + 
Sbjct: 95  RELAQQVTLALQAVAQPLSGAMKIQTLCGGVDIDNQLIELAERPQILVATPGRILDLCKQ 154

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             + +  +K +VLDEAD +L++GF  D++ ++   PK ++ L+FSAT+  A+ TLA    
Sbjct: 155 SHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKHKQTLLFSATLPEALDTLASQLL 214

Query: 202 -KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
             D +RV     N     I+ +  LV    +  A++ +L+ +     +VF S R      
Sbjct: 215 INDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIALLKQYQWPQVLVFISARDDADAV 274

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            K LA+   +V AL GE  Q  RS  L   +  R ++ +ATD+ ARGI +  L +V++ +
Sbjct: 275 AKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQILVATDLMARGIHIDALPVVVNLD 334

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  +    +HR GRT RAG KG+++ ++
Sbjct: 335 LPMSAPVYVHRIGRTARAGTKGLAISLV 362


>gi|328874156|gb|EGG22522.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 576

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 192/342 (56%), Gaps = 18/342 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   L  +D+L SA+TGSGKT AF + + S LL+E+          A+
Sbjct: 112 GFKQPSNIQYNTIPKVLEGRDILASAKTGSGKTAAFAIPILS-LLSED-----PYGVFAV 165

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+G + + + +   V  AV IGG+    +   L    HI+V TPGRL  H
Sbjct: 166 VLTPTRELAVQIGEQFKAIGSAMNVNCAVVIGGIDSVAQSLVLDKRPHIIVATPGRLASH 225

Query: 139 I-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITT 195
           +  G  + +   K +VLDEAD +L   F  +IE I++  P  + R+ L++SAT++  +  
Sbjct: 226 LSNGLKIALKFCKFLVLDEADRILCEDFELEIEKIVEHLPPIENRQTLLYSATMTNNLKK 285

Query: 196 LAKNYQKDAVRVNIASENRQHSDID----YRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           L     KD     +  +N ++  +D    +   + AL+ +D  +V +L+     + I+F 
Sbjct: 286 LQLVPMKDPF---VFEDNSKYDTVDTLKQHYIYMPALA-KDCHLVYLLKSFPQSSCIIFV 341

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +   +V     +L +   + V+L   L Q+ R  AL+  + G  +V IATDVA+RG+D+P
Sbjct: 342 NNCRTVEAVKGMLNKLDIKTVSLHSFLDQKGRLRALKQFKSGFVKVLIATDVASRGLDIP 401

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           D+++VI+ +LS++ ++ +HR GRT R GR G ++ FV P ++
Sbjct: 402 DVQIVINYKLSNSSKDYIHRVGRTARFGRTGKAISFVTPHDV 443


>gi|328353170|emb|CCA39568.1| eukaryotic initiation factor 4A [Pichia pastoris CBS 7435]
          Length = 486

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 170/326 (52%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY   +++Q   + P +  +DVL  AQ+G+GKT  F +   S L   
Sbjct: 111 NLKEQILRAVFAYGYEFPSAIQSRAILPIVAGRDVLAQAQSGTGKTATFAI---SALQRL 167

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +++   A     L +APTRELA+Q+ + +  L     + V  CIGGV    + +   +G 
Sbjct: 168 DEKLKAAQV---LILAPTRELALQIKKVVLALGMHLNISVHACIGGVDPALDVKAFNSGV 224

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I        ++K V+LDEADEML  GF++ I  +    P   ++++ 
Sbjct: 225 QIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTGFKEQIYTLFTLLPSTTQVVLL 284

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +   +  + +R+ +  +      I    V V     + + + ++      
Sbjct: 285 SATMPQEVLEVTTKFMNNPIRILVKKDQLTLEGIKQFYVDVGEEQYKFDCLCDLYDSISV 344

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ L    F V A+  ELSQ ER   +Q  R G +R+ I+TD+ 
Sbjct: 345 TQAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFRTGSSRILISTDLL 404

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 405 ARGIDVQQVSLVINYDLPSNKENYIH 430


>gi|254284613|ref|ZP_04959580.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425398|gb|EDN17174.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 428

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 178/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------TAIQTLMIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALMLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL+++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLSLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G++V ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIAVSLV 362


>gi|118597486|sp|Q0UWC8|PRP28_PHANO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 746

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 183/354 (51%), Gaps = 30/354 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDRFSPAS 73
           GY   ++VQ A +   L+ +D++  A TGSGKT +F L L   +     L  ++R   A 
Sbjct: 346 GYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQLPPLGPSNR---AD 402

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+ +APTRELA Q+  E     A  G   AV +GG S+  +   +++GA IV+ TPG
Sbjct: 403 GPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMRDGAEIVIATPG 462

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---------------- 177
           RL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P                
Sbjct: 463 RLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEKPDSDAAEDPNA 522

Query: 178 ----KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ +M++AT+  A+  +A+ Y +    V I +       ++ R   +   ++  
Sbjct: 523 MKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQRVEHIQGEEKRK 582

Query: 234 AIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             +  +   G      IVF + + +     + +    F  V L G  +Q++R  AL  +R
Sbjct: 583 KRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQEQREAALAQLR 642

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + R  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRAG+ G+++
Sbjct: 643 EHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGKSGVAI 696


>gi|319955547|ref|YP_004166814.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424207|gb|ADV51316.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 438

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 174/309 (56%), Gaps = 11/309 (3%)

Query: 36  REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
           +  + ++ + TG+GKT+AF L L  TL A  D         AL + P+RELA+Q+ + L 
Sbjct: 33  KTTNTILLSPTGTGKTLAFLLPLLKTLDATIDEVQ------ALIVVPSRELAIQIEQVLR 86

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            +   TG  V    GG ++ +++ +L++   I++GTPGR+ DH      +   +K ++LD
Sbjct: 87  IM--GTGFKVNAVYGGRTMAKDKSELKHNPAILIGTPGRILDHFMNDRFSKESIKTLILD 144

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           E D+ LD GF D+++ I+ + P+  + ++ SAT +  I    +      V +N   E ++
Sbjct: 145 EFDKCLDKGFSDEMKGIIANVPRINKRILTSATQNIEIPPFVR--LDKPVLINYLKE-KK 201

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              ++ + V+  L ++   +++++ + G +  IVFC+ + ++    K L E        S
Sbjct: 202 ALKLEIKTVISPLRNKSQTLLDLVMHLGNEQGIVFCNLKENIEYLDKFLTEKKISHSTFS 261

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           GE+ Q +R  AL   R+G +++ IATD+AARGID+P+L+ +IH ++ ++ E   HR+GRT
Sbjct: 262 GEMEQYDRDRALIKFRNGTSQLLIATDLAARGIDVPELKYIIHYDVPASEEEFTHRNGRT 321

Query: 336 GRAGRKGMS 344
            R   KG +
Sbjct: 322 ARVNTKGTA 330


>gi|295134684|ref|YP_003585360.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
 gi|294982699|gb|ADF53164.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
          Length = 447

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 178/340 (52%), Gaps = 16/340 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G    T +QE    P +  +DV+  AQTG+GKT A+ L L   L     +FS   
Sbjct: 15  ALEEMGIQKPTPIQEQAFAPVMSGRDVVGIAQTGTGKTYAYLLPLLRML-----KFSKQK 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL VQV  E++ L     + VA   GGV+++ ++++LQ G  IVV TP 
Sbjct: 70  NPRILIMVPTRELVVQVVEEIDKLAKYINLRVAGIYGGVNINTQQQELQRGLDIVVATPR 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + + +  ++  V+DE D MLDLGF+  +  I++  P  R+ +MFSAT++  +
Sbjct: 130 RLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPPNRQSIMFSATMTETV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAI 248
             +         +++IA       +I  +  ++      N   N+L++        K  +
Sbjct: 190 EEMINENFNAPEKISIAVSGTPLDNIQQQGYILP---NFNTKANLLKHLFSDKETFKKIL 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +F S +    R    L +     V+L  +G+ SQ  R   ++   +G  R+ IATDV AR
Sbjct: 247 IFISDKRIADRLFDSLGQKFPGEVSLVHTGK-SQNYRLKNVEDFDEGLTRIMIATDVMAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           G+DL  +  VI+ +  + PEN +HR GRTGRA +KG S+ 
Sbjct: 306 GLDLDAVSHVINFDTPNYPENYMHRIGRTGRAEKKGNSIL 345


>gi|254568340|ref|XP_002491280.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|238031077|emb|CAY69000.1| Putative ATP-dependent RNA helicase of the DEAD-box family [Pichia
           pastoris GS115]
 gi|328352202|emb|CCA38601.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 434

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 187/361 (51%), Gaps = 29/361 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L        + +QEA +   L   D +  A+TGSGKT+AF   + +      D +   
Sbjct: 15  ESLDAMKIYTPSKIQEATIPKILAGYDCIGGAKTGSGKTIAFAAPMLTKW--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA+Q+  +   L A   + V+V +GG  + ++  +LQ   H VV TP
Sbjct: 70  -GVFGLILTPTRELALQIAEQYAALGASMNIKVSVILGGGDIVQQALELQRRPHFVVATP 128

Query: 133 GRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLMFS 186
           GRL DHI   G      +  +K +VLDEAD +L   F  D+E  F +   P+KR+ L+F+
Sbjct: 129 GRLADHILSSGEETIGGLRKIKFLVLDEADRLLSNSFGSDLERCFKVLPPPEKRQTLLFT 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------------NA 234
           AT++  +  L    +K      +     +   +D  A+   L+               NA
Sbjct: 189 ATVTDEVRALK---EKPVPEGKLPVFVHEVESVDKVAIPATLTTNYLFIPSYVKEAYLNA 245

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L  +     IVF +   +     + L    F+V +L  E+ Q ER N+L   + G 
Sbjct: 246 VLA-LEENADSTVIVFVNRTQTAELLRRTLRNLEFRVASLHSEMPQIERINSLHRFKAGA 304

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           AR+ IATDVA+RG+D+P +ELV++ ++ ++P++ +HR GRT RAGRKG S+ FV  Q+++
Sbjct: 305 ARILIATDVASRGLDIPSVELVVNYDMPADPDDYIHRVGRTARAGRKGESLSFVTEQDVK 364

Query: 354 R 354
           R
Sbjct: 365 R 365


>gi|238788233|ref|ZP_04632028.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
 gi|238723820|gb|EEQ15465.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
          Length = 438

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/340 (35%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILNEPVELEADPSRRERKKILQWYYRAD--NIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 187/360 (51%), Gaps = 10/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + +   G+   T +Q       L+ KD++  A+TGSGKT+  G  L + + +  
Sbjct: 159 FPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTL--GYLLPAFITSSA 216

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P  L +    ELA Q+  E    ++KT  +   C+ GG     + RD+  GA
Sbjct: 217 LIITPKWGPTILVLHQQGELATQIQDEAV-KFSKTSRIACTCLYGGAPKGPQLRDIDRGA 275

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LMF
Sbjct: 276 DIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMF 335

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRY-- 241
           +AT    +  +A +   + V+VNI +  E   +  I     ++A  ++   + +IL+   
Sbjct: 336 TATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILQSQD 395

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G+K  I+FCST+    +  + L    F   A+ G+ SQ +R + L   R GR  V +AT
Sbjct: 396 QGSK-IIIFCSTKKMCDQLARNLTRQ-FGAAAIRGDKSQADRDHVLNQFRSGRTPVLVAT 453

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ D+ +V++    +  E+ LHR GRTGRAG  G++         + A  L +
Sbjct: 454 DVAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGDQDAKHASDLIK 513


>gi|251788689|ref|YP_003003410.1| ATP-dependent RNA helicase SrmB [Dickeya zeae Ech1591]
 gi|247537310|gb|ACT05931.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 450

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  L
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRIL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  +   + A T + +A   GGV+             +VV T GRL  +
Sbjct: 81  ILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQY 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLA 197
           I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI   A
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFA 200

Query: 198 KNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +    D + +      R+   I    YRA    +  +   + ++L+      +IVF   R
Sbjct: 201 ERLLNDPITIEAEPSRRERKKILQWYYRAD--DIQHKTALLSHLLKQPDVTRSIVFVRKR 258

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+ 
Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 319 HVFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLV 352


>gi|159484128|ref|XP_001700112.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272608|gb|EDO98406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 637

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 178/353 (50%), Gaps = 12/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+ +G    T +Q   L   L  +D++  A TGSGKT+ F L +    L E
Sbjct: 197 KLPPAVLRVLASKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFTLPMILIALQE 256

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHR 116
             R        P+ + I P+RELA Q   E+  +Y +         V V +CIGG+    
Sbjct: 257 EMRMPLGQNEGPIGMVICPSRELATQT-YEIADMYCQALNADRYPEVRVMLCIGGIDPKP 315

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDS 175
               L+ G H VV TPGRL D +  K +N+   + + LDEAD M+D +GF DD+  IL  
Sbjct: 316 MYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDEADRMVDQVGFEDDVRDILSF 375

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +R+ LMFSAT+   I   A++   D V VN+      + D+      V    +   +
Sbjct: 376 FRGQRQTLMFSATMPAKIKAFAESALVDPVEVNVGRAGAANMDVIQEVEYVKEEAKLPYL 435

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L+   A   +VF   +  V    + L     + VA+ G+ +Q++R  A+   + G A
Sbjct: 436 LECLQ-KTAPPVLVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIASFKKGDA 494

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I
Sbjct: 495 DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 547


>gi|238750653|ref|ZP_04612152.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
 gi|238711043|gb|EEQ03262.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
          Length = 428

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 183/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P  +KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVEKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 189/361 (52%), Gaps = 8/361 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +++ G+ N T++Q       L  +D++  AQTGSGKT+A+ L      +A 
Sbjct: 235 NFPDFVMNEINKMGFPNPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLP-GIVHIAH 293

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                    P+ L +APTRELA Q+   +     ++K  +      GG     + RDL+ 
Sbjct: 294 QKPLQRGEGPVVLVLAPTRELAQQIQTVVRDFGTHSKPLIRYTCIFGGALKGPQVRDLER 353

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++L
Sbjct: 354 GVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 413

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYH 242
           M+SAT    +  LA+++  D +++NI S N   +   ++ V V    +++  ++++L+  
Sbjct: 414 MWSATWPKEVQALAEDFLHDYIQINIGSLNLSANHNIHQIVDVCEEGEKEGKLLSLLKEI 473

Query: 243 GA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R G++ + +
Sbjct: 474 SSDVNSKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHGKSTILV 533

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAER 358
           ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +  F  P N ++  E 
Sbjct: 534 ATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSYGTAYTFFTPGNGRQAREL 593

Query: 359 L 359
           L
Sbjct: 594 L 594


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 189/358 (52%), Gaps = 5/358 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +          +A+
Sbjct: 521 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLEDGDGAIAI 579

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TPGR+ D 
Sbjct: 580 IMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 639

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT    +  
Sbjct: 640 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEA 699

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTR 254
           LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + IVF   +
Sbjct: 700 LARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQ 759

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+D+ DL 
Sbjct: 760 ENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLI 819

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S    PA
Sbjct: 820 LVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSGTLIPA 877


>gi|324504040|gb|ADY41744.1| ATP-dependent RNA helicase DDX42 [Ascaris suum]
          Length = 808

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 183/344 (53%), Gaps = 4/344 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y + T++Q   +   L  +DVL  A+TGSGKTVA+ L  A   + +  +      P+AL 
Sbjct: 293 YEHPTAIQAQSVPAALSGRDVLGIAKTGSGKTVAY-LWPAIVHIMDQPQLKEGDGPIALI 351

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA+QV +E +       + V    GG S   ++  L+ GA +VV TPGR+ D +
Sbjct: 352 VVPTRELAIQVYQEAKRFCKVYNIAVVCAYGGGSKWEQQNALKEGAELVVATPGRIIDLV 411

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + +  N + +  +V DEAD M D+GF   ++ I D     R+ LMFSAT    +  LA++
Sbjct: 412 KIEATNFTRVTFLVFDEADRMFDMGFEAQVKSISDHIRPDRQCLMFSATFKAKVERLARD 471

Query: 200 YQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASV 257
              D VR+        + D I    VL ++  +   ++  ++++      ++F + + + 
Sbjct: 472 ALVDPVRIVQGEVGEANEDVIQNVEVLPSVDAKWRWLLQRLVQFLAQGKVLIFVTKKQNA 531

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L  + F +V L G++ Q ER+  L   R   A + +ATDVAARG+D+P++  VI
Sbjct: 532 EEVAQRLQTNDFALVLLHGDMLQAERNEKLHAFRKDTA-LMVATDVAARGLDIPEIRTVI 590

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + +L+ + +  +HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 591 NFDLARDIDTHVHRIGRTGRAGEKGYAYTLLTDADKEMAGHLVR 634


>gi|262191754|ref|ZP_06049928.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032393|gb|EEY50957.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 406

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 172/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 24  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  + A  G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 77  RELAMQVSEVLTQVGAPLGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFD-LTQSG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 136 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 196 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWSQVLVFIGAKENADSLTKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ +R  AL   +DG  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGIVATALHGDKSQAQREAALAEFKDGTTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + +  +HR GRT RAG++G+++ ++
Sbjct: 316 HAQTYVHRVGRTARAGQQGIALSLV 340


>gi|224098856|ref|XP_002311293.1| predicted protein [Populus trichocarpa]
 gi|222851113|gb|EEE88660.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 185/348 (53%), Gaps = 19/348 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +   E G  N T VQ   +   L  +DVL  AQTGSGKT AF L +   L    D F   
Sbjct: 75  QTCKELGMKNPTQVQSHCIPKILSGRDVLGLAQTGSGKTAAFALPILHRL--AEDPF--- 129

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA Q+  +     +   +  AV +GG+ +  + + L    H+V+ TP
Sbjct: 130 -GVFALVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAKTLMGRPHVVIATP 188

Query: 133 GRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           GR+   +    ++   S  K +VLDEAD ++D+GF++++  +    PK R+ L+FSAT++
Sbjct: 189 GRIKVLLENPDISPVFSRTKFLVLDEADRLIDVGFQEELRVVFKCLPKSRQTLLFSATMT 248

Query: 191 PAITTL-------AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             + TL       A  Y++      + + N+Q+  +      V L      I++ +   G
Sbjct: 249 SELQTLLELSENKAYFYEEYEGFKTVDTLNQQYIQMPKNVKEVYLV----YILSKMEEMG 304

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AI+F S  ++    + +L E   +   L    SQ  R  +L   + G+A + IATD+
Sbjct: 305 IRSAIIFVSACSTCRLLSSLLKELDHEPATLYSLESQSARLASLHRFKSGQASILIATDL 364

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           A+RG+D+P ++LVI+ +L  +P + +HR GRT RAGR+G++V ++ Q+
Sbjct: 365 ASRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAGREGLAVSLVAQH 412


>gi|296807429|ref|XP_002844208.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
 gi|238843691|gb|EEQ33353.1| eukaryotic initiation factor 4A [Arthroderma otae CBS 113480]
          Length = 395

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVSIGDFMSVDCHACIGGTNVREDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 189/373 (50%), Gaps = 12/373 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++ +GY   + +Q   +   L+ +DV+ +AQTG+GKT+ F L +   L     + +
Sbjct: 31  IVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVLERL----SKLA 86

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P  A    AL + PTRELAVQ+G  +        +      GGV ++ +   L+ G  ++
Sbjct: 87  PVQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKLRGGVDVL 146

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D      +    L+ +VLDEAD ML++GF  DI  I+   P +R+ LMFSAT
Sbjct: 147 VATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQTLMFSAT 206

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  LA+    D V +++A  N     I      V  + +   +  ++  +  +  +
Sbjct: 207 FPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQWVYPVDQNKKSALLSKLICDNQWEQVL 266

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  + L +      A+ G+ SQ  R+ AL+  + G  R+ +ATD+AARG+
Sbjct: 267 VFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRILVATDIAARGL 326

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA--ERLFREANV 365
           D+  L  V++ +L    E+ +H  GRTGRAG  G  +  V     Q+ +  ERL +    
Sbjct: 327 DIYQLPQVVNFDLPHVKEDYVHLMGRTGRAGAPGQVISLVCADEFQQLSDIERLIKMVLT 386

Query: 366 SVV---WEPAPSV 375
             +   +EP P++
Sbjct: 387 RKIIDGFEPIPAL 399


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 181/342 (52%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I +A++E+GY + T +Q   +   L +++++ +AQTG+GKT +F L +   L  +E  R 
Sbjct: 12  IVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPILEMLSRSETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A   L + PTRELAVQV   +        +      GGV    +R  L  G  I+V
Sbjct: 72  KRIRA---LILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   L+ +VLDEAD MLD+GF +DI  I++  P  R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVDRQTLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA+      + +++         I+   V V    +   + ++++ +  + A++
Sbjct: 189 SRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +       + G  SQ+ R   L   + G+  + IAT +AARG+D
Sbjct: 249 FIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLLIATGIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L LVI+ +L    ++ +HR GRTGRAG  G +V ++ ++
Sbjct: 309 IDELPLVINYDLPYPADDYIHRIGRTGRAGASGEAVALVSKD 350


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 7/346 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+ L 
Sbjct: 289 YTTPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFVWPMLIHIMDQKE-LKPGDGPIGLI 347

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTREL+ Q+  E +       + V  C GG S   + + L+NGA IVV TPGR+ D I
Sbjct: 348 LAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSKALENGAEIVVATPGRMIDLI 407

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    +  LA+ 
Sbjct: 408 KMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFSATFKKKVERLARV 467

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILRYHGAKNAIVFCSTRA 255
              D +R+        + D+  + VL+ L ++    +    +I+ +    + ++F + + 
Sbjct: 468 VLTDPIRIVQGDVGEANEDV-IQNVLI-LPNQAAKFMWLTSHIVEFLSNGSLLIFVTKKV 525

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L    F V+ L G++ Q ER+  +   +     + +ATDVAARG+D+P ++ 
Sbjct: 526 NAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSILVATDVAARGLDIPHIKT 585

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           V++ +++ + +   HR GRTGRAG +G +  ++    +  A  L R
Sbjct: 586 VVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQDKEFAGHLVR 631


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + +   P 
Sbjct: 288 KAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQRE-LKPG 346

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA IVV TP
Sbjct: 347 DGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGAEIVVATP 406

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    
Sbjct: 407 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKR 466

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 467 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 525

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +A        L       + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 526 FVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 585

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 586 IPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 637


>gi|170030308|ref|XP_001843031.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167866923|gb|EDS30306.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 404

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 193/355 (54%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A    +L + D   P     AL
Sbjct: 50  GFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIA----ILQQIDTNIPECQ--AL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L+ G HIVVGTPGR+ D 
Sbjct: 104 ILAPTRELATQIQKVVIALGDYLQAQCHACIGGTNVRDDMRKLEMGCHIVVGTPGRVHDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L  +H+K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  ++ 
Sbjct: 164 ISRNFLRTNHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVILLSATMPSEVLEVST 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ ++ V++ +  E      I    + V     +   + ++        A++FC+TR  V
Sbjct: 224 HFMREPVKILVKKEELTLEGIKQFYIDVKQEGWKLGTLCDLYDTLSITQAVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + T  +A   F V ++ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DQLTADMAAESFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L +  EN +HR GR GR GRKG+++  + +  +R    + +  N ++   PA
Sbjct: 344 NYDLPTLRENYIHRIGRGGRFGRKGVAINFVTEADKRVLTDIEKHYNTTIEEMPA 398


>gi|318607668|emb|CBY29166.1| ATP-dependent RNA helicase RhlB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 428

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|223999867|ref|XP_002289606.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
           pseudonana CCMP1335]
 gi|220974814|gb|EED93143.1| U5 small nuclear ribonucleoprotein, RNA helicase [Thalassiosira
           pseudonana CCMP1335]
          Length = 501

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 36/364 (9%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---PL 76
           Y   + +Q   +   ++ +D++  A+TGSGKT AFG+ L   +L+         A   PL
Sbjct: 107 YTKPSPIQRQAIPIGMQRRDLIGIAETGSGKTAAFGIPLCHHILSFPQSILDTVAEEGPL 166

Query: 77  ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL +APTRELA+Q+  E+ + L ++  VV    +GG S+  +   L+NG H+VVGTPGR+
Sbjct: 167 ALVMAPTRELALQIDIEIRKLLSSQQNVVSLAVVGGQSITEQATKLRNGVHVVVGTPGRI 226

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------------------- 176
            D +    L ++    +VLDEAD M+DLGF   IE ILD+                    
Sbjct: 227 NDCVEMAYLVLNQCSYIVLDEADRMIDLGFAPQIEQILDAMGGKLKSENETEAYEQERKD 286

Query: 177 --------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVA 227
                   P  R   MFSAT+   +  +AK Y +  V V I  ++  +++ I  R + ++
Sbjct: 287 LEILGKAVPSHRLTAMFSATMPSEVERIAKRYLRHPVIVQIGDQDSGKNARITQRVLYLS 346

Query: 228 LS-DRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            S  +++ + +IL R    +  IVF + +       +++     + V L G  +Q++R  
Sbjct: 347 SSKQKESTLRDILRRSRSDEKIIVFVNEKKHADGVGRMVENAGRRCVVLHGGKTQEQREE 406

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP-ENLLHRSGRTGRAGRKGMS 344
            L + R G   V +ATDVA RG+D+PD+  VI+ +L +   +N  HR GRTGRAG++G++
Sbjct: 407 NLGLFRRG-GVVLVATDVAGRGLDIPDVHQVINFDLPTRSIDNYCHRIGRTGRAGKEGLA 465

Query: 345 VFVI 348
              I
Sbjct: 466 TSFI 469


>gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 422

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 179/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+VI   L+  G+   T +Q   L   + ++D+   AQTG+GKT+AF  A    LL
Sbjct: 14  FNIAPEVIA-GLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKTLAFLTATCHHLL 72

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +        P AL +APTRELAVQ+ ++ + L     + + +  GG    ++   L+ 
Sbjct: 73  QSSK--GQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEEYEKQLAQLEK 130

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  I++GT GRL D  +    +++ ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 131 GVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLFRRMPDATQRL 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA  +  + + V +    +    I       A  D+   ++ I+  
Sbjct: 191 NLLFSATLSYRVQELAFEHMTNPIHVQVEPSQKTGKRIVEELFHPAQVDKIPLLLTIIEE 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AIVF +T+         L     +V  L+G+++Q++R + L+    G     +AT
Sbjct: 251 EWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFTAGNLDFLVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++
Sbjct: 311 DVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAI 354


>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
          Length = 620

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 196/376 (52%), Gaps = 41/376 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFS 70
           A+   G+   T +Q   +  +L+  D++  A+TGSGKT AF + +   ++    E    S
Sbjct: 193 AIETLGFKEPTPIQRQAIPIELKGMDMIGIAKTGSGKTCAFVVPMLQYVIQAPIETRLQS 252

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-----------KTGVVVAVCIGGVSVHRERR 119
               PLA+ +APTRELA Q+  + E L                + +A  +GG S+  +  
Sbjct: 253 KEQGPLAVVMAPTRELAKQIRDDAEKLAQFCVDERLAQSRSPRIRIACMVGGESIVEQSS 312

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
            L NG  I++GTPGRL D +    + ++    +VLDEAD M+D GF + +  ++D+    
Sbjct: 313 FLSNGCDILIGTPGRLLDCLERHFVVLNQTNYIVLDEADRMIDEGFEESVNAVMDAMGST 372

Query: 176 -------------------SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                              +   R  +MFSAT+ P +  +AK Y +  V+V I + +   
Sbjct: 373 LKSEEEEDIEKAAEGVASLTNMYRTTIMFSATMPPKVEAIAKRYMRCPVQVTIGTPS-GT 431

Query: 217 SDIDYRAV--LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           + +D + +  +V  SD+ + ++ I+R +    AIVFC+ + +V   T+ L +   + VAL
Sbjct: 432 TKVDIKQIINMVRESDKPSMLLKIIR-NNETPAIVFCNRKETVDTVTRSLHDSGHRTVAL 490

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G + Q  R  AL+  R G   + +AT+VAARG+D+  ++LV++ ++  + E  +HR GR
Sbjct: 491 RGGIQQSRREEALEDFRRGVYDIMVATNVAARGLDIKGVKLVVNYDMPDSLELYIHRIGR 550

Query: 335 TGRAGRKGMSVFVIPQ 350
           TGRAG  G++V ++ +
Sbjct: 551 TGRAGATGLAVSLVTE 566


>gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
          Length = 421

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 192/346 (55%), Gaps = 8/346 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           KD+  V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKVQILVSSDLSARGLDVKDVTHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
             NP+  LHR GRTGRA ++G+++ +I +  +    +  +E N+++
Sbjct: 321 PENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINI 366


>gi|295837571|ref|ZP_06824504.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
 gi|295826577|gb|EDY45280.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
          Length = 738

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 184/363 (50%), Gaps = 5/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L + L   
Sbjct: 59  GLPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQLAGG 118

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G 
Sbjct: 119 ---FTDKKKPRGVILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMGNQIYALERGV 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++F
Sbjct: 176 DILVATPGRLRDLINRGACSLEKVQIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K Y  + V   + +     + + +  ++V   D+      I    G  
Sbjct: 236 SATLENEIDALVKRYLVNPVAHEVDAAQGAVTTMSHHILIVKPRDKAPVTAAIASRKG-- 293

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAA
Sbjct: 294 RTIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNALVATDVAA 353

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V
Sbjct: 354 RGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGV 413

Query: 366 SVV 368
              
Sbjct: 414 DAA 416


>gi|213410166|ref|XP_002175853.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
 gi|212003900|gb|EEB09560.1| translation initiation factor eIF4A [Schizosaccharomyces japonicus
           yFS275]
          Length = 392

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 189/346 (54%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L ++DVL  AQ+G+GKT  F +++    L + D  +      AL
Sbjct: 38  GFERPSAIQQRAIVPILGDRDVLAQAQSGTGKTATFSISV----LQKID--TSLKQCQAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    CIGG  V  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  ILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVREDMAALQAGVHVVVGTPGRVHDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF+D I  I    P   ++++ SAT+   +  +  
Sbjct: 152 IQRRALPTDAVKMFVLDEADEMLSRGFKDQIYDIFQLLPPTSQVVLLSATMPQDVLEVTT 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 212 KFMRDPVRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETITVTQAVIFCNTRRKV 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L E  F V ++ G++ Q +R   +   R G +R+ I TD+ ARGID+  + LVI
Sbjct: 272 DWLTEQLTERDFTVSSMHGDMDQAQRDILMHEFRTGSSRILITTDLLARGIDVQQVSLVI 331

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+S+ FV  ++  M R  E+ +
Sbjct: 332 NYDLPANRENYIHRIGRGGRFGRKGVSINFVTSEDVRMMREIEQFY 377


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 16/337 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +     ++     PL L 
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHQY-----PLGLV 369

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V TPGRL D I
Sbjct: 370 LAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMI 429

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFSATISPAITT 195
               + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMFSAT    I  
Sbjct: 430 TRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQE 489

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-------RYHGAKNAI 248
           LA ++  + + + +        +I    + V   D+ + ++++L        Y      +
Sbjct: 490 LASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTL 549

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + +AT VAARG+
Sbjct: 550 IFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGL 609

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 610 DIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 646


>gi|126652237|ref|ZP_01724416.1| YqfR [Bacillus sp. B14905]
 gi|126590969|gb|EAZ85081.1| YqfR [Bacillus sp. B14905]
          Length = 434

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 170/340 (50%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    +  A++E G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 9   NFQPFLQNAIAELGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 69  KQEVQ------AVITSPTRELAQQIYDALSQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 123 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFVF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y    V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 183 SATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSKSRNKRLLEVIEGINPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR +       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 243 LAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQVRDLEYQYIVATDLAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++
Sbjct: 303 RGIDIQGVSHVINYEIPEDLEFFIHRVGRTARAGNKGTAI 342


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 172/341 (50%), Gaps = 31/341 (9%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AF L     +  +  R      P  L + PTRELA QV +E+   
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQAHR-QRGEGPAVLVLLPTRELAQQV-QEVSID 224

Query: 98  YAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +  + G+ +    GG S   + RDL+ G  IVV TPGRL D +     N+     +VLDE
Sbjct: 225 FCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDE 284

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF   I+ I+      R+ LMFSAT    +  LA ++QKDA  +N+ S     
Sbjct: 285 ADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGS----- 339

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAK----------------NAIVFCSTRASVSRF 260
                  + +A +     +V+IL  H  +                  I+F  T+      
Sbjct: 340 -------LELAANHNITQVVDILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADEL 392

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATDVAARG+D+ D++ VI+ +
Sbjct: 393 TRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYD 452

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
             +N E+ +HR GRTGR+ +KG +          +A+ L +
Sbjct: 453 YPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLK 493


>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
 gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
          Length = 403

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 180/352 (51%), Gaps = 9/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 10  AIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 68

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 69  ARI-LILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQDIVVATPG 127

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    +++ L+FSAT+    
Sbjct: 128 RLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSNECRWRKQTLLFSATLEGKG 187

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIV 249
           +     +  KD   ++     R+   I   A     +D  N  + +L+      A+ +IV
Sbjct: 188 VEGFTADLLKDPADIDAEPSRRERKKI---AQWYHRADDMNHKLELLKKIITDQAERSIV 244

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  +      L +       + GE+ Q  R+NA+   RDG   V +ATDVAARGID
Sbjct: 245 FLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGID 304

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           LPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++  + Q   +R+ R
Sbjct: 305 LPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVAR 356


>gi|16800556|ref|NP_470824.1| hypothetical protein lin1488 [Listeria innocua Clip11262]
 gi|16413961|emb|CAC96719.1| lin1488 [Listeria innocua Clip11262]
          Length = 435

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 188/351 (53%), Gaps = 8/351 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  +++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +   + + R  +L
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPSDEDRLNQL 360


>gi|225712874|gb|ACO12283.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
 gi|290561827|gb|ADD38311.1| Eukaryotic initiation factor 4A-II [Lepeophtheirus salmonis]
          Length = 413

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +A+   +    +R        AL
Sbjct: 59  GFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNRTQ------AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG S+  + R L++G HIVVGTPGR+ D 
Sbjct: 113 ILAPTRELAQQIQKVVLSLGDFLKATCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   ++K  VLDEADEML  GF++ I  +     +  ++++ SAT+   +  + K
Sbjct: 173 ITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTK 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  E      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 233 RFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V ++ GE+SQ+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 CWLTEKMGLKHFTVSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVI 352

Query: 318 HAELSSNPENLLH 330
           + +L  N EN +H
Sbjct: 353 NYDLPVNKENYIH 365


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 183/339 (53%), Gaps = 7/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAENDRFSP 71
           L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L L    + L +   + S 
Sbjct: 23  LTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQQIAELQSGKAQASK 82

Query: 72  ASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            +    L + PTRELA QV   ++ +     G +  V + GGVSV+ +   L+ GA I+V
Sbjct: 83  GNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGADILV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK+++ L+FSAT 
Sbjct: 143 ATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLLFSATF 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              + TL +    + V + + S +   S +  R   V   ++ + + ++++ +  + A++
Sbjct: 203 PEEVQTLTQALLNNPVEIQLQSADA--STVVQRVFTVNKGEKTSVLAHLIQKNQWRQALI 260

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + + + +     LA+         G+  Q  R+  L+  + G   V IATD+AARG+D
Sbjct: 261 FVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIAARGLD 320

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 321 IEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLI 359


>gi|6321963|ref|NP_012039.1| Dbp8p [Saccharomyces cerevisiae S288c]
 gi|731740|sp|P38719|DBP8_YEAST RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|160380633|sp|A6ZT77|DBP8_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|458901|gb|AAB68014.1| Yhr169wp [Saccharomyces cerevisiae]
 gi|151944115|gb|EDN62408.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
 gi|207344531|gb|EDZ71646.1| YHR169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273978|gb|EEU08896.1| Dbp8p [Saccharomyces cerevisiae JAY291]
 gi|259146927|emb|CAY80183.1| Dbp8p [Saccharomyces cerevisiae EC1118]
 gi|285810075|tpg|DAA06862.1| TPA: Dbp8p [Saccharomyces cerevisiae S288c]
 gi|323308784|gb|EGA62022.1| Dbp8p [Saccharomyces cerevisiae FostersO]
 gi|323337360|gb|EGA78613.1| Dbp8p [Saccharomyces cerevisiae Vin13]
 gi|323348321|gb|EGA82570.1| Dbp8p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354703|gb|EGA86538.1| Dbp8p [Saccharomyces cerevisiae VL3]
          Length = 431

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 197/365 (53%), Gaps = 33/365 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +  T  +E+    
Sbjct: 13  LTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML-TKWSED---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++  DLQ   H ++ 
Sbjct: 68  -PSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIA 126

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           TPGRL  HI   G +    +   K +VLDEAD +L   F D +   + + P K  R+ L+
Sbjct: 127 TPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLL 186

Query: 185 FSATISPAITTLAKN-----------YQKDAV-RVNIASENRQHSDIDYRAVLVALSDRD 232
           F+ATI+  + +L              YQ ++V  V I S  +    I+Y  +LV    ++
Sbjct: 187 FTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK----IEY--ILVPEHVKE 240

Query: 233 NAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +L    +  K AI+F +   +     + L +   +V +L  ++ QQER+N+L   
Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R   AR+ IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G ++ FV  
Sbjct: 301 RANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQ 360

Query: 350 QNMQR 354
           +++ R
Sbjct: 361 RDVSR 365


>gi|259013615|gb|ACV88438.1| AT04852p [Drosophila melanogaster]
          Length = 390

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 170/313 (54%), Gaps = 20/313 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +R +DV+  AQ+G+GKT  F +A+    L + D  +      AL
Sbjct: 49  GFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAI----LQQID--TSIRECQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ R +  L     V    CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 103 ILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L   ++K  VLDEADEML  GF+D I+ +    P   ++++ SAT+ P +  +++
Sbjct: 163 INRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSR 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D V + +  E      I    V V   + +   + ++        +++FC+T    
Sbjct: 223 CFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNT---- 278

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                    H F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 279 ---------HNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVI 329

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 330 NYDLPSNRENYIH 342


>gi|238765157|ref|ZP_04626090.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
 gi|238696647|gb|EEP89431.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
          Length = 428

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|68489575|ref|XP_711406.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|68489673|ref|XP_711358.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|74656107|sp|Q59NP8|SPB42_CANAL RecName: Full=ATP-dependent rRNA helicase SPB42
 gi|46432654|gb|EAK92127.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432705|gb|EAK92176.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
          Length = 631

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 194/379 (51%), Gaps = 36/379 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAEND 67
           I EA+S  GY  +T VQ + +      KDV+V A TGSGKT++F + +   +   L + D
Sbjct: 21  IKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPD 80

Query: 68  RFSPASAP------LALAIAPTRELAVQV----GRELEWLYAKTG--VVVAVCIGGVSVH 115
                  P      L++ ++PTRELA Q+     + L++L    G  +   + +G +   
Sbjct: 81  SDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNV 140

Query: 116 RERRD--LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           RE  +  L N   I++GTPGR+ + +   + +  S L+ V+LDEAD++LD  F  D+  I
Sbjct: 141 REDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINI 200

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLV 226
           L   PK+RR  +FSATIS A  T+ +    + V+V + S+N           +    +++
Sbjct: 201 LKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMI 260

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL--------AEHLFQVVALSGEL 278
               +   ++ IL  +  K AIV+  T  SV  F ++         ++   +  +L G+L
Sbjct: 261 NPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQL 320

Query: 279 SQQERSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           + + R   L     G       + + TDVAARGID+PD++LVI  +  ++P   LHR GR
Sbjct: 321 NTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGR 380

Query: 335 TGRAGRKGMSVFVIPQNMQ 353
           TGRA + G ++ ++  N Q
Sbjct: 381 TGRANKVGRAIVMLNDNCQ 399


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ +  +  P 
Sbjct: 279 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQKQLKPG 337

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 338 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 397

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFSAT    
Sbjct: 398 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 457

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 458 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 516

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 517 FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 576

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 577 IPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 628


>gi|114647689|ref|XP_001170097.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 isoform 1 [Pan
           troglodytes]
          Length = 451

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 192/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDL-QNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +     Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVEKFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|307822012|ref|ZP_07652244.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307736578|gb|EFO07423.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 191/354 (53%), Gaps = 8/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T VQ   +   L  KD+LVSA+TGSGKT AF L     LL      S  S
Sbjct: 24  AVKKLGFEQPTPVQLQSIPLALEHKDLLVSAETGSGKTAAFLLPALHHLLTLP---SGKS 80

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+ +  + L   T +   +  GG     ++  L+    IV+ TPG
Sbjct: 81  GVRALILTPTRELAQQIFKHCQQLTEFTDLKTGLITGGDDFRLQQNMLRRNTEIVIATPG 140

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           R+ + +  +  + S+L+ ++LDEAD MLD+GF +D+  I +S   +R+ L+FSAT++   
Sbjct: 141 RVLELMEQEIPDFSNLEVLILDEADRMLDMGFSEDVLTIANSCNTQRQTLLFSATLTHFG 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNAIVFC 251
           +  +A    K+   V + + +  H +I+ + VL   +D     ++ +L+      A+VF 
Sbjct: 201 VIKMADRVLKNHEVVALNTLHDGHRNIEQQIVLADDNDHKLKLLIWLLQNETYDKALVFT 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ++R         L     +V  L GE+ Q++R+  +++ R+G  ++ +ATD+AARG+D+ 
Sbjct: 261 NSRIQADALRGPLRGQKLRVGVLHGEMDQKDRNRMMELFREGEVKIMLATDLAARGLDIK 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
            + LVI+ ++  N  N +HR GRTGR    G+++ ++     N+    ER  ++
Sbjct: 321 GINLVINFDVPRNGINYIHRIGRTGRVDELGLTIALVKHTEWNLMSGIERFLKQ 374


>gi|195163860|ref|XP_002022767.1| GL14575 [Drosophila persimilis]
 gi|194104790|gb|EDW26833.1| GL14575 [Drosophila persimilis]
          Length = 1243

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 193/364 (53%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L + +     
Sbjct: 550 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPN-LDEG 608

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V TP
Sbjct: 609 DGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCTP 668

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 669 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 728

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + I
Sbjct: 729 PRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESKFFKLLELLGIYQEAGSII 788

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 789 VFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 848

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 849 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSGC 908

Query: 369 WEPA 372
             PA
Sbjct: 909 LVPA 912


>gi|332159793|ref|YP_004296370.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664023|gb|ADZ40667.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 423

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P VI EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 13  PLVI-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 71

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 72  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 130 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 189

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 190 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 249

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 250 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 310 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 352


>gi|258611679|ref|ZP_05711599.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605374|gb|EEW17982.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 424

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E +   
Sbjct: 28  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKE--- 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 85  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 142 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 202 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 262 VFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 322 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 358


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ +  +  P 
Sbjct: 279 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQKQLKPG 337

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 338 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 397

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFSAT    
Sbjct: 398 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 457

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 458 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 516

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 517 FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 576

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 577 IPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 628


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 176/348 (50%), Gaps = 8/348 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   + + GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 208 NLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRD 267

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V+  V  GG       R + 
Sbjct: 268 GITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGHSVRQIV 327

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +I+ ++      S +
Sbjct: 328 QGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLDMGFAPEIKKLISCPGMPSKE 387

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + + L+FSAT    I  LA ++ K + + V +        D+    + V    ++ +++ 
Sbjct: 388 QHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQKEKSLLR 447

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V
Sbjct: 448 FYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDFRCGKCPV 507

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++
Sbjct: 508 LVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 555


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/316 (35%), Positives = 168/316 (53%), Gaps = 10/316 (3%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
            QTGSGKT+ + L     + A+ +R +    P+AL +APTRELA Q+ + +   +     
Sbjct: 34  GQTGSGKTLGYILPAIVHINAQ-ERLNHGDGPIALILAPTRELAQQI-QSVTTDFGSLSY 91

Query: 104 VVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V + CI GG     + RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD
Sbjct: 92  VRSTCIFGGAPRGGQARDLRRGVEICIATPGRLIDFLEQGTTNLRRCTYLVLDEADRMLD 151

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF   I  I++     R++LM+SAT    + TLAK Y K+ V++NI S     +    +
Sbjct: 152 MGFEPQIRKIIEQIRPDRQVLMWSATWPKEVRTLAKEYLKNYVQLNIGSLTLAANHDILQ 211

Query: 223 AVLVALSDRDNAIVNIL--RYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            V V       A +  L    H A       I+F  T+  V   T+ +    +  V + G
Sbjct: 212 IVEVCEEYEKEAKLKTLLENIHDANEDSSKIIIFVETKKKVESITRSIRRFGWPAVCIHG 271

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           + SQ ER   L+  R+ ++ + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTG
Sbjct: 272 DKSQHERDFVLREFRNKKSSILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTG 331

Query: 337 RAGRKGMS-VFVIPQN 351
           R+G  G S     PQN
Sbjct: 332 RSGNTGTSYALFTPQN 347


>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
 gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
          Length = 445

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 180/345 (52%), Gaps = 9/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ++ +AL ++GY   TSVQ   +   L  +D+L SA TG+GKT AF L     LL +  
Sbjct: 17  PQLL-KALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAIQHLL-DYP 74

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+             I
Sbjct: 75  RRKPG-APRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEVFNKNQDI 133

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++   +FSA
Sbjct: 134 VVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRKHTWLFSA 193

Query: 188 TIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T+    +   A+    D V++      R+   I    Y A    L  +   +  ++    
Sbjct: 194 TLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHAD--NLDHKTKLLARLINDFE 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF   R +V   +  L +   +   L G+++Q +R+ A+  +++    V ++TDV
Sbjct: 252 MEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKENVVNVLVSTDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 312 AARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 189/369 (51%), Gaps = 6/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  Y   T +Q   +   +   D++  A+TGSGKTVAF L +   ++ +        
Sbjct: 504 ALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGKTVAFLLPMLRQIMDQRP-LEDTE 562

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+A+ + PTRELA+Q+ +E +       + V    GG  +  +  +L+ GA I+V TPG
Sbjct: 563 GPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGGTGISEQIAELKRGAEIIVCTPG 622

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+     +VLDEAD M D+GF   +  +++S    R+ ++FSAT  
Sbjct: 623 RMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHVINSCRPDRQTVLFSATFP 682

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-V 249
             +  LA+      V V +   +   SD+  + +++    +   ++ +L  +  K A+ V
Sbjct: 683 RQMEALARRILNKPVEVQVGGRSVVCSDVKQQVLILTEEQKFLKLLELLGQYQEKGAVLV 742

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L +  +  +AL G + Q +R + +   + G  ++ IAT VAARG+D
Sbjct: 743 FVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGVNQLLIATSVAARGLD 802

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + +L LV++    ++ E+ +HR GRTGRAG KG +   I Q+  R A  + +   +S+  
Sbjct: 803 VKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTFITQDQARYAGEIIKALELSLTK 862

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 863 VP-PDLEML 870


>gi|256053074|ref|XP_002570034.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227287389|emb|CAY17652.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 527

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 212/397 (53%), Gaps = 11/397 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + I  A+ E G+ ++T +Q   +   L  +D++  A+TGSGKT+AF + +   
Sbjct: 52  FEDLPISEPIKRAVKEMGFTHMTDIQGKCIPQLLEHRDLMACAKTGSGKTLAFLIPVVEL 111

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L  N    P +   A+ I+PTREL++Q    L  L   T + + + +GG +   E ++L
Sbjct: 112 ML--NLGLQPRNGTGAIIISPTRELSLQTYGVLGELIQFTNLRIGLIMGGSNRQTEAQNL 169

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G  I+V TPGRL DH+      + H LKA+V+DEAD +LD+GF  ++  I+   P  R
Sbjct: 170 EKGVTILVATPGRLLDHLSNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVR 229

Query: 181 RMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NI 238
           + ++FSAT++     LA    K   V V  A +     +   +  +V   DR   ++   
Sbjct: 230 QTMLFSATLNEKTKNLANAALKASCVMVGSAPDTEATVEGLEQGYVVCPPDRRFCLLYTF 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ + +K  +VF ++   V  + ++L      V+A+ G   Q +R++         + V 
Sbjct: 290 LKKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFVKAESAVL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAE 357
           + TDV ARG+D+P ++ ++  +   + +  +HR GRT RAG  G ++ V+ P  ++  + 
Sbjct: 350 LCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFLS- 408

Query: 358 RLFREANVSVV-WEPAPSVEAIRERDAQRILQDPLFL 393
            + R+A V VV +E A S  A  +   ++++++  FL
Sbjct: 409 -ILRKARVKVVEYEIANSKMADVQPALEKLIKNNYFL 444


>gi|241047288|ref|XP_002407236.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
 gi|215492155|gb|EEC01796.1| translation initiation factor 4F, helicase subunit, putative
           [Ixodes scapularis]
          Length = 422

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 171/316 (54%), Gaps = 13/316 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A    +L + D         AL
Sbjct: 68  GFEKPSAIQQRAIIPCIKGMDVIAQAQSGTGKTATFSIA----ILQQID--MALKECQAL 121

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  + R L+ G H VVGTPGR+ D 
Sbjct: 122 ILAPTRELAQQIQKVVIALGDYMNAQCHACIGGTNVREDIRKLEKGVHTVVGTPGRVFDM 181

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  K L  ++++  VLDEADEML  GF+D I  +  +     ++++ SAT+   +  + K
Sbjct: 182 ISRKALRTNNIRIFVLDEADEMLSRGFKDQIYDVFRTLNSNIQVILLSATMPSDVLDVTK 241

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            + ++ +R+ +  E      I    V V   DR+    + + ++        A++FC+TR
Sbjct: 242 CFMRNPIRILVKKEELTLEGIKQFYVAV---DREEWKLDTLCDLYETLTITQAVIFCNTR 298

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ + E  F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + 
Sbjct: 299 RKVDWLTEKMHERDFTVSALHGDMGQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVS 358

Query: 315 LVIHAELSSNPENLLH 330
           LVI+ +L +N EN +H
Sbjct: 359 LVINFDLPTNRENYIH 374


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 174/335 (51%), Gaps = 4/335 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +    
Sbjct: 66  IIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 125

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G H+V+
Sbjct: 126 E-LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVI 184

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSA 187
            TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+   +   + + LMFSA
Sbjct: 185 ATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 244

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  +A  + K+ V V I       SD+      V    + + ++ IL    A   
Sbjct: 245 TFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADGT 303

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG
Sbjct: 304 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 363

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +D+ +++ VI+ ++ S  ++ +HR GRTGR G  G
Sbjct: 364 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398


>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 438

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 27/361 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + G V+ T +Q   + P L  +D+   A TGSGKT A+ L L    +          
Sbjct: 15  SLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLLQRWMDGGKAQGAQG 74

Query: 74  APL----ALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             +     L + PTRELA QVG  L  L    K    + V  GGVS++ +   L+  A  
Sbjct: 75  GFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVSINPQMMMLRGSADF 134

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + +S ++ +VLDEAD +LDLGF+D+++ +L   PK+R+ L+FSA
Sbjct: 135 LVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVLALLPKQRQTLLFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHS----DIDYRAVLVALSDRDNAIVNILRYHG 243
           T   A+ +LA     D V+  + +   Q +     I  RA+ V  + R   +  +++   
Sbjct: 195 TYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAVDRARRTQLLRQLVQGDT 254

Query: 244 A--------KNAIVFCSTRASVSRFTKVLAEHLFQ----VVALSGELSQQERSNALQMMR 291
           A        + A+VF +TR +     +++AE L++      A  G+LSQ  R  AL   +
Sbjct: 255 AAGTDPVTLERALVFVATRHTA----ELVAEKLYKAGIFATAFHGDLSQGARKEALADFK 310

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
             R +V I TD+AARGID+  L LV++ +L  +  + +HR GRTGRAG  G ++ FV P 
Sbjct: 311 AKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAGEDGTAISFVTPA 370

Query: 351 N 351
           +
Sbjct: 371 D 371


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 179/330 (54%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   ++VQ+  + P    +DV+  +Q+G+GKT  F + +   L       + +S   AL
Sbjct: 48  GFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGILQML------DTTSSDTQAL 101

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  L     V    CIGG S+  + R L  G  +V GTPGR+ D 
Sbjct: 102 VLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDIRRLDYGVQVVSGTPGRVFDM 161

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L   +L+ +V+DEADEML+ GF++ I  I    P   ++++ SAT+   +  + K
Sbjct: 162 IRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTK 221

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +    V++ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 222 KFMNMPVKILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKR 279

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T  + E  F V ++ G++ Q+ER   ++  R GR+RV IATDV  RG+D+  + L
Sbjct: 280 KVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRVLIATDVWGRGLDVQQVSL 339

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI  +L +N E  +HR GR+GR GRKG+++
Sbjct: 340 VICYDLPNNRELYIHRIGRSGRFGRKGVAI 369


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|238762788|ref|ZP_04623757.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
 gi|238699093|gb|EEP91841.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
          Length = 441

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFAERILTEPVELEADPSRRERKKIQQWYYRAD--DIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+A+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDIASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 180/352 (51%), Gaps = 5/352 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ +  +  P 
Sbjct: 282 KAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQKQLKPG 340

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA I+V TP
Sbjct: 341 DGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP 400

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFSAT    
Sbjct: 401 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKR 460

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIV 249
           I  LA++   D VR+     N  + DI  ++V V    L   +  + +++++    + ++
Sbjct: 461 IERLARDVLSDPVRIVQGDLNEANQDIT-QSVYVFPNPLQKWNWLLCHLVKFLSEGSVLI 519

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D
Sbjct: 520 FVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLD 579

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 580 IPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 631


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 182/350 (52%), Gaps = 17/350 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           +P+ + + + +  Y   T VQ+    I+N D   +D++  AQTGSGKT AF L + + + 
Sbjct: 207 LPETVRDNVRKANYTKPTPVQKYSIPIVNGD---RDLMACAQTGSGKTAAFLLPVLAGIF 263

Query: 63  ---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              L   D FS    P A+ + PTREL  Q+  E       T +   V  GG SV  +  
Sbjct: 264 RNGLKSVDSFSGKQTPQAIIVGPTRELVYQIFIEARKFARSTMIKPVVAYGGTSVRSQLS 323

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--P 177
           DL  G +I++ TPGRL D I    ++   ++ ++LDEAD MLD+GF  +I  ++ +   P
Sbjct: 324 DLSRGCNILIATPGRLLDFITKGKVSCECVEYLILDEADRMLDMGFEPEIRRLVAAPGMP 383

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            K  R  LMFSAT    I  LA  + ++D + + +       SD+    V +   D+ + 
Sbjct: 384 DKNTRHTLMFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQIDQDDKRDK 443

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ +L      A   +VF  T+ +       L++      ++ G+  Q+ER  AL   ++
Sbjct: 444 LMELLADVAETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETALLDFKN 503

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GR  + IAT VAARG+D+P +E VI+ +L S+ +  +HR GRTGR G  G
Sbjct: 504 GRCPILIATSVAARGLDIPKVEHVINYDLPSDIDEYVHRIGRTGRCGNLG 553


>gi|326475356|gb|EGD99365.1| eukaryotic translation initiation factor 4 [Trichophyton tonsurans
           CBS 112818]
 gi|326482351|gb|EGE06361.1| eukaryotic initiation factor 4A [Trichophyton equinum CBS 127.97]
          Length = 396

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|313623752|gb|EFR93892.1| probable ATP-dependent RNA helicase YqfR [Listeria innocua FSL
           J1-023]
          Length = 435

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  +++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 179/341 (52%), Gaps = 4/341 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P VI +A+  +G+ + T +Q       L  +DV   AQTG+GKT+AF  ++ + LL    
Sbjct: 18  PLVI-KAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAA 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D       P AL + PTRELA+Q+  + E L   T + + +  GG    ++ + L++G  
Sbjct: 77  DETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GTPGR+ D+ +   ++++ L+ +VLDEAD M DLGF  DI ++    P  +KR  ++
Sbjct: 137 ILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAEKRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  L+         + +    +  S I       +  D+   +  ++     
Sbjct: 197 FSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         L     +V  L+G+++Q++R   L     G   + +ATDVA
Sbjct: 257 DRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  N E+ +HR GRTGRAG KG S+
Sbjct: 317 ARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSI 357


>gi|327292761|ref|XP_003231078.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
 gi|326466708|gb|EGD92161.1| ATP-dependent RNA helicase eIF4A [Trichophyton rubrum CBS 118892]
          Length = 396

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNVDCHACIGGTNVREDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 182/334 (54%), Gaps = 7/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   +  +D +  AQ+G+GKT  F + +   +   N R   A     L
Sbjct: 44  GFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLQAI-DWNVRQCQA-----L 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+   +  L     +    CIGG  V  + + L  G HIV GTPGR+ D 
Sbjct: 98  VLSPTRELAIQIHNVIRNLGTYMNIHTHACIGGKQVGDDLKKLNQGQHIVSGTPGRVLDV 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   +++ ++LDEADE++  GF++ I  I    P   ++++ SAT++  +  +  
Sbjct: 158 IKRRNLATRNVQMLILDEADELMTKGFKEQIYEIYRHLPSTVQVVVVSATLTREVLEITS 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D V++ +  E+     I    +     + + + + ++        A++FC+T++ V
Sbjct: 218 KFTTDPVKILVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDLYDSLTITQAVIFCNTKSKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     L +  F V ++ G++ Q+ER + +   R G +RV I+TDV ARGID+  + LVI
Sbjct: 278 NWLADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L  + EN +HR GR+GR GRKG+++ +I ++
Sbjct: 338 NYDLPLDKENYVHRIGRSGRFGRKGVAINLITKD 371


>gi|308159475|gb|EFO62004.1| ATP-dependent RNA helicase [Giardia lamblia P15]
          Length = 449

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 203/385 (52%), Gaps = 27/385 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAE 65
           P+++ +AL   G++  T++Q+ +L      K  DV+  A+TGSGKT AF +     LL  
Sbjct: 10  PELL-DALERIGWLEPTAIQKEMLAVVSHNKACDVVGVAETGSGKTGAFAIPALQDLL-- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R +       + ++PTRELAVQ       L    G+   + IGGV + ++R+ L    
Sbjct: 67  -ERGNNVKGVHTVVLSPTRELAVQTFSVFRDLGKGFGLRTGLVIGGVDLMQQRKTLAQQP 125

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           H+++ TPGRL DH+   +G ++  L+ +++DEAD+ML+      +  +    P++RR  +
Sbjct: 126 HVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLSLTKDCPQRRRTFL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-------------ASENRQHSDID-----YRAVLV 226
           FSAT   A+  L       +  V+I              S N Q + +D     ++ V++
Sbjct: 186 FSATFPSAVQALQNECTDRSRLVHIRVGVLTKAAPDVDGSTNTQLAVVDNEFLSHKMVVL 245

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             S++   +V +L  H     IVF +  ++V++   +L    F+V  + G +SQ +R   
Sbjct: 246 PHSEKQLGLVVLLNNHATCQIIVFATKISTVTKLALMLTTLGFEVGVVHGSMSQDKRLEE 305

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R G  ++ +A+DVA RGID+P+++LVI+ +L     + +HR GRT RAGR+G ++ 
Sbjct: 306 LNRFRQGEHKILLASDVAGRGIDIPNIDLVINYDLPVASRDYVHRVGRTARAGRRGTALT 365

Query: 347 VIPQNMQRRAERLFREANVSVVWEP 371
           V+ Q      +R+  EA + +  EP
Sbjct: 366 VVTQYDVVNFKRI--EAMLGIKMEP 388


>gi|158264214|gb|ABW24667.1| putative ATP-dependent RNA helicase DDX4 [Rana nigromaculata]
          Length = 398

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/313 (33%), Positives = 168/313 (53%), Gaps = 8/313 (2%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L + + L+    ++  F     P A+ +APTREL  Q+  +    
Sbjct: 1   MACAQTGSGKTAAFLLPILAHLMVKGVQSSAFQTLKEPEAIIVAPTRELINQIYLDARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T     V  GG       + +  G +I+  TPGRL D  R + + ++ L+ +VLDEA
Sbjct: 61  AYGTCARPVVIYGGTQTFHSLKQISEGCNILCATPGRLLDVSRKEKIGLTKLRYLVLDEA 120

Query: 158 DEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASE 212
           D MLD+GFR+DIE +L S    S ++R+ LMFSAT   +I +LA+   K D + V +   
Sbjct: 121 DRMLDMGFREDIESLLKSPGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQV 180

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
               SD++   + V  S + + ++ IL+  G++  +VF  T+         L +      
Sbjct: 181 GGACSDVEQLVIEVEESGKKDKLMEILQQIGSERTMVFVKTKKKADFIATFLCQEKVPST 240

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           ++ G+  Q+ER  AL+  R G+  V +AT  AARG+D+ ++  VI+ ++  + +  +HR 
Sbjct: 241 SIHGDREQREREMALRDFRTGQCPVIVATSAAARGLDIENVSYVINFDVPDDIDEYVHRI 300

Query: 333 GRTGRAGRKGMSV 345
           GRTGR G  G ++
Sbjct: 301 GRTGRCGNTGRAI 313


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/350 (34%), Positives = 184/350 (52%), Gaps = 28/350 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 305 YDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYEHGHSAPPQSNRQYSR 364

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 365 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 424

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 425 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 483

Query: 186 SATISPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAI 235
           SAT    I  LA ++  + +     RV   SEN   +     + D R+ L+ L    ++I
Sbjct: 484 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLL---SSI 540

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N   Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G  
Sbjct: 541 RNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDRTQKEREEALRCFRSGDC 600

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 601 PILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 650


>gi|153212167|ref|ZP_01947962.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
 gi|124116719|gb|EAY35539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae 1587]
          Length = 406

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 24  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 77  RELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPNILVATTGRLFD-LTQSG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 136 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 196 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LKKAGVVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G++V ++
Sbjct: 316 HAETYVHRVGRTARAGQQGIAVSLV 340


>gi|95102876|gb|ABF51379.1| eukaryotic translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 177/326 (54%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++    L +
Sbjct: 53  NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI----LQQ 108

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L++G 
Sbjct: 109 ID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 166

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L+ + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 167 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 226

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +++ + +D VR+ +  E      I    + + L + +   + ++      
Sbjct: 227 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 286

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 287 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 346

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  +  VI+ +L SN EN +H
Sbjct: 347 ARGIDVQQVSCVINYDLPSNRENYIH 372


>gi|238798893|ref|ZP_04642359.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
 gi|238717247|gb|EEQ09097.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           ++ +AL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   AE 
Sbjct: 19  LVTQALESKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSNPAEE 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  GRQT--NQPRALIMAPTRELAVQIHSDAESLSQTTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  ++
Sbjct: 137 ILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|303288912|ref|XP_003063744.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454812|gb|EEH52117.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 577

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 177/343 (51%), Gaps = 7/343 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++  GY  +T VQ   + P L  +DVL +A+TGSGKT+AF   + S  L  + +F P + 
Sbjct: 88  IATMGYETMTEVQARTIPPLLAGRDVLGAARTGSGKTLAF--LVPSVELLYHAKFMPRNG 145

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              + + PTRELA+Q+    + L  K      + IGG +   E   L  G +++V TPGR
Sbjct: 146 AGVMILTPTRELALQIYNVTQQLMTKHSQTHGLIIGGANRRAEAEKLVKGVNLLVATPGR 205

Query: 135 LCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DH++  KG   S LK   +DEAD MLD+GF +++  I+   PK R+ ++FSAT +  +
Sbjct: 206 LLDHMQNTKGFTFSSLKIFCMDEADRMLDIGFEEEMRTIVKMIPKDRQTMLFSATQTTKV 265

Query: 194 TTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA+   K    + +  A      + ++    +V    R   +   L+ +  K  +VF 
Sbjct: 266 EDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEKRFLLLFTFLKKNLKKKVMVFF 325

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           S+  SV    ++L      V  + G+  QQ R+            V + TDVAARG+D+P
Sbjct: 326 SSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERGVLLCTDVAARGLDIP 385

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D++ +I  +   +P+  +HR GRT R   GR    +F+IP+ +
Sbjct: 386 DVDWIIQFDPPDDPKEYIHRVGRTARGTDGRGRALLFLIPEEL 428


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 181/361 (50%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +     +   +   ++  S  R+   I         ++   A++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883352|gb|EAT47577.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 799

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 175/338 (51%), Gaps = 3/338 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P 
Sbjct: 292 KAIRKSEYTQPTPIQAQGVPAALSGRDIIGIAKTGSGKTAAFLWPMLVHIMDQKE-LGPG 350

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+ +E +       + V  C GG S   + + L+ GA IVV TP
Sbjct: 351 DGPIGLILAPTRELSLQIYQEAKKFGKIYNISVCCCYGGGSKWEQSKALEQGAEIVVATP 410

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD+M +LGF   +  I +     R+ ++FSAT    
Sbjct: 411 GRMIDMVKMKATNLQRVTYLVLDEADKMFNLGFEPQVRSICNHVRPDRQTMLFSATFKKR 470

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVF 250
           I  LA++   D VR+        + DI    +++       +  +  ++        ++F
Sbjct: 471 IERLARDVLTDPVRIMHGDLGEANEDITQHVIVMNNPAHKWNWLLAKMVELLSEGTVLIF 530

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +A   +    L    +  V L G++ Q +R+  +   R     + +ATDVAARG+D+
Sbjct: 531 VTKKADAEQVANNLRLKEYDPVLLHGDMDQADRNIVITRFRKREVEIMVATDVAARGLDI 590

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P ++ VI+ +++ + +   HR GRTGRAG KG +  ++
Sbjct: 591 PHIKNVINYDIARDIDTHTHRVGRTGRAGEKGTAYTLV 628


>gi|294811208|ref|ZP_06769851.1| Putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|326439836|ref|ZP_08214570.1| putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294323807|gb|EFG05450.1| Putative DEAD-box RNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 574

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 10/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-LAST--L 62
           ++P  +   L+ +G      +Q A L   L  +DVL   +TGSGKT+AFGLA LA T  L
Sbjct: 45  DMPTGLLATLTSQGVTTPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLAVLARTAGL 104

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            AE+       APLAL + PTRELA QV   +        + +A  +GG+S+ ++   L+
Sbjct: 105 RAES------RAPLALVLVPTRELAQQVTDAMAPYATAVNLRLATAVGGLSITKQAGALR 158

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D +      +  ++  VLDEAD+M D+GF   I  ++       + 
Sbjct: 159 RGTEVLVATPGRLNDLVDRGDCVLDQVRITVLDEADQMTDMGFLPQITKVIQQVRPDGQR 218

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  L + +  D V  ++       S +++  VL  L + D   V +    
Sbjct: 219 LLFSATLDHNIDRLVQRFLTDPVVHSVDPSAGAVSTMEHH-VLHILDETDKKAVTVRIAA 277

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ S  R  K L     +  AL G  +Q +R+  L+  ++G+    +AT+
Sbjct: 278 RDGRVILFLDTKRSADRLAKRLLASGVRAAALHGGRTQPQRNRTLEQFKNGQVTALVATN 337

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGI + DL+LV++ +  S+ ++ LHR GRT RAG  G  V ++    +R   RL  +
Sbjct: 338 VAARGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGGSGSVVTLVLPEQKREVTRLMSD 397

Query: 363 ANV 365
           A +
Sbjct: 398 AGI 400


>gi|194375087|dbj|BAG62656.1| unnamed protein product [Homo sapiens]
          Length = 411

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQERHLVFFSTCACVEYYGKALEVLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|120597828|ref|YP_962402.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557921|gb|ABM23848.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 438

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ+  +   L  +DVL  AQTGSGKT+AFGL L  ++L +  +    +   AL + PT
Sbjct: 43  TLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLLQSVLEQQAQALITAQ--ALVLVPT 100

Query: 84  RELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           RELA QV   L+ +       + +    GGV +  +  +L     I+V TPGR+ D  + 
Sbjct: 101 RELAQQVTLALQAVAQPLSGAMKIQTLCGGVDIDNQLIELAERPQILVATPGRILDLCKQ 160

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             + +  +K +VLDEAD +L++GF  D++ ++   PK ++ L+FSAT+  A+ TLA    
Sbjct: 161 SHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKHKQTLLFSATLPEALNTLASQLL 220

Query: 202 -KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
             D +RV     N     I+ +  LV    +  A++ +L+ +     +VF S R      
Sbjct: 221 INDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIALLKQYQWPQVLVFISARDDADAV 280

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            K LA+   +V AL GE  Q  RS  L   +  R ++ +ATD+ ARGI +  L +V++ +
Sbjct: 281 AKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQILVATDLMARGIHIDALPVVVNLD 340

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  +    +HR GRT RAG KG+++ ++
Sbjct: 341 LPMSAPVYVHRIGRTARAGTKGLAISLV 368


>gi|329925824|ref|ZP_08280569.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
 gi|328939612|gb|EGG35959.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
          Length = 448

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 187/353 (52%), Gaps = 6/353 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G V  + VQ   + P L  KDVL ++QTG+GKT+A+ L +   +  E         
Sbjct: 19  LAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQGIDPE------IKG 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L+    ++VGTPGR
Sbjct: 73  AQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLHPQLIVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  SAT+SP   
Sbjct: 133 VRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLSATVSPETA 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L K      V + I  E R  S +++   +    D+ + +  ++R++    AIVF +  
Sbjct: 193 ELVKKEMDQPVEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYNPDRAIVFVNAT 252

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             ++     L        AL G+  +  RS  L   R+GR ++ +A+DVAARG+D+  L 
Sbjct: 253 EDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVASDVAARGLDIEGLG 312

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S+
Sbjct: 313 MVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGISI 365


>gi|268573988|ref|XP_002641971.1| Hypothetical protein CBG16678 [Caenorhabditis briggsae]
          Length = 972

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 200/373 (53%), Gaps = 8/373 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +         
Sbjct: 322 LKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELEEGDG 380

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV TPGR
Sbjct: 381 PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKRGAEIVVCTPGR 440

Query: 135 LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +    GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSAT   
Sbjct: 441 MIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPR 500

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVF 250
            +  LA+      V + +  ++   SD+   AV+     +   ++ +L  Y+    +IVF
Sbjct: 501 HMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQGCSIVF 560

Query: 251 CSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
              +         L +  +  VA L G + Q +R +++   + G  +V +AT VAARG+D
Sbjct: 561 VDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 620

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVV 368
           + +L LV++ +  ++ E+ +HR GRTGRAGRKG +  FV+P++ ++ A  + R    + V
Sbjct: 621 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGV 680

Query: 369 WEPAPSVEAIRER 381
             PA  ++A+ ER
Sbjct: 681 KPPA-DLKAMFER 692


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 526 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 584

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 585 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 644

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 645 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 704

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 705 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 764

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 765 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 824

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 825 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 884

Query: 369 WEPA 372
             PA
Sbjct: 885 LIPA 888


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|229096653|ref|ZP_04227624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
 gi|228686859|gb|EEL40766.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
          Length = 389

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 189/355 (53%), Gaps = 12/355 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++ A    A +   +   VRV  A      S +++  ++    ++++ +  I+ 
Sbjct: 175 VFFSATMTKAAEDAASDLAVEPQLVRVTRAESK---SLVEHTYIICERREKNDYVRRIM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HMGDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           TD+AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 291 TDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|149371848|ref|ZP_01891167.1| ATP-independent RNA helicase [unidentified eubacterium SCB49]
 gi|149354988|gb|EDM43549.1| ATP-independent RNA helicase [unidentified eubacterium SCB49]
          Length = 436

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 178/339 (52%), Gaps = 18/339 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + G   L  +QE      +  K+ ++ + TG+GKTVAF L L + L  +N+    
Sbjct: 9   AEILRKLGIEQLNPMQEEAKLAIMASKETILLSPTGTGKTVAFLLPLLNELDIDNEEIQ- 67

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ I P+RELA+Q+ + L  +   TG  V    GG    ++R +L +   +++GT
Sbjct: 68  -----AIIIVPSRELAIQIEQVLREM--GTGYKVNCVYGGRPASKDRLELAHRPAVLIGT 120

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
           PGR+ DH+R +      +K +VLDE D+ L++GF  ++  I++  P   + +M SATI  
Sbjct: 121 PGRIADHLRREEFFTGAIKTLVLDEYDKSLEIGFEGEMSEIIEMLPNVEKKIMTSATIGV 180

Query: 191 --PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             PA   L      D +  N        + +  + V+    D+   +V ++   G ++ I
Sbjct: 181 RMPAFLGLENPITIDYLDGN-------ETQLKIKQVISPSKDKLETLVKLMASLGHQHGI 233

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC+ + +++R ++ L EH     A  G L Q++R  +L   R+G  ++ +ATD+AARGI
Sbjct: 234 IFCNFKDTINRVSEYLTEHNISHGAFYGGLEQKDRERSLIKFRNGTHKILLATDLAARGI 293

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           D+P+L+ ++H  L +  E   HR+GRT R    G +  +
Sbjct: 294 DVPELDFIVHYHLPTREEEFTHRNGRTARMNSNGTAFIL 332


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|328859802|gb|EGG08910.1| hypothetical protein MELLADRAFT_34708 [Melampsora larici-populina
           98AG31]
          Length = 765

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 43/379 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           IP  I E + E GY   + +Q   +   L  +D++  A+TGSGKT +F + + + +    
Sbjct: 315 IPMQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLTYIGKLA 374

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L + +R      P AL +APTRELA Q+  E      + G      +GG ++  +  ++
Sbjct: 375 PLTDENRHL---GPYALILAPTRELAQQIESETNKFALRLGYRCVSIVGGKAMEEQALNM 431

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           ++GA I++ TPGRL D I    L +     VV+DEAD M++LGF + + FILD  P    
Sbjct: 432 RDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPLSNL 491

Query: 180 --------------------------------RRMLMFSATISPAITTLAKNYQKDAVRV 207
                                           R+ +MFSAT+ PA+  LA+ Y +    V
Sbjct: 492 KPDTEEAEDSAKMTSFIGGIEGFDVSGIKGLYRQTVMFSATMPPAVERLARKYLRRPAVV 551

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
            I    +    +D +   +   D+    ++ +L        IVF + + +  +  K ++ 
Sbjct: 552 TIGVAGQAVDTVDQQVEFLPNEDKKRGRLLEVLNQGHTPPIIVFVNQKKTADQLAKDISR 611

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             +    L    +Q++R  AL  +R G + + +ATD+A RGID+P++ LV++ +++   E
Sbjct: 612 AGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPNVSLVVNFQMAGTIE 671

Query: 327 NLLHRSGRTGRAGRKGMSV 345
             +HR GRTGRAG+ G ++
Sbjct: 672 AYVHRIGRTGRAGKVGTAI 690


>gi|271501630|ref|YP_003334656.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345185|gb|ACZ77950.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 450

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 174/334 (52%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  L
Sbjct: 23  GFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRIL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  +   L A T + +A   GGV+             +VV T GRL  +
Sbjct: 81  ILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQY 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLA 197
           I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+   AI   A
Sbjct: 141 IKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDFA 200

Query: 198 KNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +    D   V      R+   I    YRA    +  +   + ++L+      +IVF   R
Sbjct: 201 ERLLNDPAEVEADPSRRERKKILQWYYRA--DDIQHKTALLSHLLKQPDVTRSIVFVRKR 258

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+ 
Sbjct: 259 ERVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVS 318

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V + +L    +  LHR GRTGRAGRKG ++ ++
Sbjct: 319 HVFNFDLPRTSDIYLHRIGRTGRAGRKGSAISLV 352


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 188/363 (51%), Gaps = 7/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I + +++  +   T +Q   +   L+  D++  A+TGSGKT AF L  A   +  
Sbjct: 131 NLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAF-LIPAMVHIGL 189

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            +       P+ L ++PTRELA Q+  E+   +    ++   C+ GG     +  DL++ 
Sbjct: 190 QEPMYRGDGPIVLVLSPTRELAQQIA-EVAKGFCDNLMIRQTCLFGGAGRGPQANDLRHL 248

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VV TPGRL D I G    ++ +  +VLDEAD+MLD+GF   I  I+    K R+ +M
Sbjct: 249 PSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDRQTMM 308

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA ++  D V + I +++   +S+I          ++ +  + +L  H 
Sbjct: 309 FSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVLNEHK 368

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+ +     + L    FQ  +L G+ +Q +R   L   R  +  + +ATDV
Sbjct: 369 DDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILVATDV 428

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           AARG+D+ D+++VI+ +   + E  +HR GRT R  ++G++V       +NM R+  ++ 
Sbjct: 429 AARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKLAKIM 488

Query: 361 REA 363
            +A
Sbjct: 489 TQA 491


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 5/344 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +    
Sbjct: 242 IIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 301

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P    ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G H+V+
Sbjct: 302 E-LGRPQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVI 360

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSA 187
            TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+   +   + + LMFSA
Sbjct: 361 ATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 420

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  +A  + K+ V V I       SD+      V    + + ++ IL    A   
Sbjct: 421 TFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADGT 479

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG
Sbjct: 480 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 539

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +D+ +++ VI+ ++ S  ++ +HR GRTGR G  G +  F  P+
Sbjct: 540 LDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPE 583


>gi|46907678|ref|YP_014067.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092740|ref|ZP_00230526.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|254824491|ref|ZP_05229492.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932635|ref|ZP_05265994.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993205|ref|ZP_05275395.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J2-064]
 gi|255522510|ref|ZP_05389747.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|300765593|ref|ZP_07075572.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|46880946|gb|AAT04244.1| putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018928|gb|EAL09675.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|293584194|gb|EFF96226.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593729|gb|EFG01490.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513694|gb|EFK40762.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|328465494|gb|EGF36723.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 1816]
 gi|328474965|gb|EGF45759.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 220]
 gi|332311891|gb|EGJ24986.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 435

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 182/337 (54%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E +   
Sbjct: 16  IGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKE--- 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              A  A+  AP+RELA Q+  E+  +  Y++  + V + IGG    R    L+    I+
Sbjct: 73  ---AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQII 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FSAT
Sbjct: 130 VGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +      Y ++    +I  +      +++R +     ++ + + N+L       AI
Sbjct: 190 IPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AARGI
Sbjct: 250 VFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  V++ EL  + +  +HR+GRTGRAG  G+++
Sbjct: 310 DIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIAL 346


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 407

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 181/344 (52%), Gaps = 12/344 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT AF L     LL +  R  
Sbjct: 14  LNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPALQHLL-DFPRRK 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P    + L + PTRELA+QV    + L   T + +   IGGVS   +   L     IVV 
Sbjct: 73  PGPCRM-LILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLPALTKTTDIVVA 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I+  +  ++  ++FSAT+ 
Sbjct: 132 TPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYRKHTMLFSATLE 191

Query: 191 PA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGA 244
            A +   A     + V ++      +   I      V L+D D A     +++IL+    
Sbjct: 192 GAGLEKFANEILNEPVELHAEPPRSERRPITQ---WVHLAD-DAAHKLALLIHILKDPET 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  TR  ++  +  L         + GE+ Q +R  +++    G     +ATDVA
Sbjct: 248 QKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPFLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++
Sbjct: 308 ARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLV 351


>gi|112983736|ref|NP_001037376.1| eukaryotic translation initiation factor 4A [Bombyx mori]
 gi|73695588|gb|AAZ80489.1| translation initiation factor 4A [Bombyx mori]
          Length = 420

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 177/326 (54%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++    L +
Sbjct: 53  NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI----LQQ 108

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L++G 
Sbjct: 109 ID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 166

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L+ + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 167 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 226

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +++ + +D VR+ +  E      I    + + L + +   + ++      
Sbjct: 227 SATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 286

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 287 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 346

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  +  VI+ +L SN EN +H
Sbjct: 347 ARGIDVQQVSCVINYDLPSNRENYIH 372


>gi|254571423|ref|XP_002492821.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
 gi|238032619|emb|CAY70642.1| Translation initiation factor eIF4A, identical to Tif1p [Pichia
           pastoris GS115]
          Length = 403

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 170/326 (52%), Gaps = 7/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY   +++Q   + P +  +DVL  AQ+G+GKT  F ++    L   
Sbjct: 28  NLKEQILRAVFAYGYEFPSAIQSRAILPIVAGRDVLAQAQSGTGKTATFAISALQRL--- 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +++   A     L +APTRELA+Q+ + +  L     + V  CIGGV    + +   +G 
Sbjct: 85  DEKLKAAQV---LILAPTRELALQIKKVVLALGMHLNISVHACIGGVDPALDVKAFNSGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I        ++K V+LDEADEML  GF++ I  +    P   ++++ 
Sbjct: 142 QIVVGTPGRVQDMIERGAFRTENVKMVILDEADEMLSTGFKEQIYTLFTLLPSTTQVVLL 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   +  +   +  + +R+ +  +      I    V V     + + + ++      
Sbjct: 202 SATMPQEVLEVTTKFMNNPIRILVKKDQLTLEGIKQFYVDVGEEQYKFDCLCDLYDSISV 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ L    F V A+  ELSQ ER   +Q  R G +R+ I+TD+ 
Sbjct: 262 TQAVIFCNTRRKVEELTERLTAQKFTVSAIHSELSQTERDTIMQEFRTGSSRILISTDLL 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGID+  + LVI+ +L SN EN +H
Sbjct: 322 ARGIDVQQVSLVINYDLPSNKENYIH 347


>gi|332670894|ref|YP_004453902.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339932|gb|AEE46515.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 529

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 124/373 (33%), Positives = 184/373 (49%), Gaps = 4/373 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +P V+  AL+  G      +Q A L   L   DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFADLGVPAVLVRALAADGITAPFPIQTATLPDALAGTDVLGRGRTGSGKTLAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +   A     +  + P AL +APTRELA Q+   +  L A  G+      GGV+  R+ 
Sbjct: 61  VARTAAARASTA-PARPRALVLAPTRELASQIDATIAPLAAAVGLRSTTVFGGVAQSRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA IVV  PGRL D ++ + +++  +   VLDEAD M DLGF   +  +LD +P+
Sbjct: 120 TALRAGADIVVACPGRLEDLLQQRLVSLDDVAITVLDEADHMADLGFLPVVRRLLDRTPR 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L K Y    V  ++ S     + + +  + V+  +   A+V  
Sbjct: 180 DGQRLLFSATLDNGVDVLVKRYLTTPVEHSVDSAASPVTAMTHHLLEVSDVEVKKAVVRA 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G    ++F  T+    +  K L       V L G L Q  R   L+    G  RV 
Sbjct: 240 L-ASGTGRRVLFTRTKHQAKKLAKQLTADGIPSVDLHGNLGQGARERNLEAFSSGAVRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + D+ LV+H +  +  +  LHRSGRT RAG  G  V ++    +     
Sbjct: 299 VATDIAARGIHVDDVGLVVHVDPPAEHKAYLHRSGRTARAGAGGDVVTLVLPEQRGDVRA 358

Query: 359 LFREANVSVVWEP 371
           L R A ++    P
Sbjct: 359 LTRAAKITAQPRP 371


>gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z]
 gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 440

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL+++GY   T++Q+  +   + E+D+L SA TG+GKT AF L     LL
Sbjct: 9   FDLAPELL-KALAKKGYDRPTAIQQESIPVAMEEQDLLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  +   L   T + +A   GGV+          
Sbjct: 68  -DYPRKKPG-APRILVLTPTRELAMQVAEQAGELAQFTKLSIATITGGVAYQNHGEVFNK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     +  ++ +    R+   I+   Y A  V     ++ I  + 
Sbjct: 186 LFSATLEGELLQDFADRILDNPAKIAVEPSRRERKKINQWYYHADSV-----EHKIKLVA 240

Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+   +N    I+F   R  V   ++ L +   +   L GE++Q +R+N++  +++G   
Sbjct: 241 RFIAQENVTKGILFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNSIDKLKNGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +
Sbjct: 301 VLVATDVAARGIDIDDISHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFV 352


>gi|255947238|ref|XP_002564386.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591403|emb|CAP97631.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 602

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/346 (32%), Positives = 195/346 (56%), Gaps = 16/346 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + +++ G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF L     L A 
Sbjct: 125 NLSEKTMQGINDMGFTTMTEIQQRTVPPLLAGRDVLGAAKTGSGKTLAFLLPAIEMLHAL 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    L ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 185 --RFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLM 239

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G +++V TPGRL DH++  +G    +LK +V+DEAD +L++GF D+I  I+   P ++R
Sbjct: 240 KGVNLLVATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEIRQIVKILPSEER 299

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIV 236
           + ++FSAT +  +  LA+ + +   + +N+   +++HS +   +   V+     R   + 
Sbjct: 300 QTMLFSATQTTKVEDLARISLRPGPLYINV-DHSKEHSTVAGLEQGYVVCEADKRFLLLF 358

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+ + V    ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 359 SFLKRNLKKKIIVFFSSCSCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQG 418

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
             I TDVAARG+D+P ++ +I  +   +P + +HR GRT R G++G
Sbjct: 419 TLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GKEG 463


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 181/347 (52%), Gaps = 12/347 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ I   ++   +   + +Q       L   D++  A+TGSGKT++F L     + A+
Sbjct: 107 HFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQ 166

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA+Q+ RE E  + K+  +   CI GG   + +R  LQ G
Sbjct: 167 -PTVKKGDGPIVLVLAPTRELAMQIERESE-RFGKSSKLKCACIYGGADKYSQRALLQQG 224

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+ TPGRL D +  +   +  +  +VLDEAD MLD+GF   I  IL      R+ LM
Sbjct: 225 VDVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLM 284

Query: 185 FSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR-- 240
           FSAT    +  LA++Y K+  V V I    +    I+ R   +V ++D+   I  +++  
Sbjct: 285 FSATWPKNVQNLAQDYCKNTPVYVQIG---KHELAINERIKQIVYVTDQSKKINQLIKQL 341

Query: 241 --YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    ++F  T+      +++L +  F+ +A+ G+ +Q++R   +   + G  R+ 
Sbjct: 342 DCLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRIL 401

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IATDVA+RG+D+ D+  V + +     E+ +HR GRTGRAG  G +V
Sbjct: 402 IATDVASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAV 448


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 183/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 13  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 65

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 66  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 246 AIVFANTKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 344


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 191/364 (52%), Gaps = 5/364 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 523 EVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDG 581

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 582 DGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 641

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 642 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 701

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y  A + I
Sbjct: 702 PRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSII 761

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 762 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 821

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S  
Sbjct: 822 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGT 881

Query: 369 WEPA 372
             PA
Sbjct: 882 LIPA 885


>gi|309358205|emb|CAP34588.2| hypothetical protein CBG_16678 [Caenorhabditis briggsae AF16]
          Length = 1000

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/373 (32%), Positives = 200/373 (53%), Gaps = 8/373 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +         
Sbjct: 350 LKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELEEGDG 408

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV TPGR
Sbjct: 409 PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKRGAEIVVCTPGR 468

Query: 135 LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +    GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSAT   
Sbjct: 469 MIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPR 528

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVF 250
            +  LA+      V + +  ++   SD+   AV+     +   ++ +L  Y+    +IVF
Sbjct: 529 HMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQGCSIVF 588

Query: 251 CSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
              +         L +  +  VA L G + Q +R +++   + G  +V +AT VAARG+D
Sbjct: 589 VDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 648

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVV 368
           + +L LV++ +  ++ E+ +HR GRTGRAGRKG +  FV+P++ ++ A  + R    + V
Sbjct: 649 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGV 708

Query: 369 WEPAPSVEAIRER 381
             PA  ++A+ ER
Sbjct: 709 KPPA-DLKAMFER 720


>gi|226478852|emb|CAX72921.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Schistosoma japonicum]
          Length = 527

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 211/397 (53%), Gaps = 11/397 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + +  A+   G+ ++T +Q   +   L  +D++  A+TGSGKT+AF + +   
Sbjct: 52  FEDLPISEPVKRAIKVMGFTHMTDIQNKCIPQLLEHRDIMACAKTGSGKTLAFLIPVVEL 111

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L+      P +   A+ I+PTREL++Q    L  L   T + + + +GG +   E ++L
Sbjct: 112 MLSLG--LQPRNGTGAIIISPTRELSLQTYGVLTELIQFTNLRIGLIMGGSNRQTEAQNL 169

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G  I+V TPGRL DH+      + H LKA+V+DEAD +LD+GF  ++  I+   P  R
Sbjct: 170 EKGVTILVATPGRLLDHLTNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVR 229

Query: 181 RMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNI 238
           + ++FSAT++     LA    K   V V    +N    + ++   V+ + S R   +   
Sbjct: 230 QTMLFSATLNEKTKNLANAALKASCVMVGSVPDNEATVEGLEQGYVVCSPSKRFCLLYTF 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R + +K  +VF ++   V  + ++L      V+A+ G   Q +R++         A V 
Sbjct: 290 IRKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFIKAEAAVL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAE 357
           + TDV ARG+D+P ++ ++  +   + +  +HR GRT RAG  G ++ V+ P  ++  + 
Sbjct: 350 LCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFLS- 408

Query: 358 RLFREANVSVV-WEPAPSVEAIRERDAQRILQDPLFL 393
            + R+A V VV +E A S  A  +   ++++ +  FL
Sbjct: 409 -ILRKARVKVVEYEIANSKMADVQPALEKLVTNNYFL 444


>gi|222635678|gb|EEE65810.1| hypothetical protein OsJ_21540 [Oryza sativa Japonica Group]
          Length = 921

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 188/346 (54%), Gaps = 18/346 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLA-ENDRFSPASA 74
           GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF    + + S L   + D+  P  +
Sbjct: 472 GYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPIS 531

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTP 132
              + + PTRELA Q   E  + L     + V + IGG  +  E++ +  N   I+V TP
Sbjct: 532 --VVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATP 589

Query: 133 GRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GRL DH+    G    +  +K ++LDEAD +LD+GFR DIE I+ + PK+R+ L+FSAT+
Sbjct: 590 GRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATV 649

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +  +     ++D   VN   E  +  HS +    V+  L  + + +  +L  H ++N
Sbjct: 650 PDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSILYGLLTDHISEN 709

Query: 247 A----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVFC+T    S   ++L+E    V  +     Q  R+   +  ++ +  + +++D
Sbjct: 710 VDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFKESKGLILVSSD 769

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V+ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++
Sbjct: 770 VSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLL 815


>gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
 gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 183/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+VI EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PKVI-EALNKKGFNFCTPIQASTLPYTVEGKDVAGQAQTGTGKTLAFLTSTFHFLLTH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + R L
Sbjct: 75  ---PAIEGKKTNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQLRVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           Q+G  I++GT GRL D+ +   ++++ ++ +VLDEAD M DLGF  DI ++    P    
Sbjct: 132 QDGVDILIGTTGRLIDYAKQGHVDLAAIQVIVLDEADRMYDLGFIKDIRWLFRRMPSATD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT+S  +  LA         + +    +    I       +  ++   +  +L
Sbjct: 192 RLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R   L+    G+  + +
Sbjct: 252 EEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSI 357


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 181/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  VLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  K+   ++     R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 181/358 (50%), Gaps = 8/358 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDR 68
           V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF + AL   L     +
Sbjct: 13  VLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA     L + PTRELA+QV  + + L   T + +    GGV        L     IV
Sbjct: 73  AGPARI---LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT
Sbjct: 130 VATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTLLFSAT 189

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           +    +     +  K+   ++     R+   I               ++  +    A+ +
Sbjct: 190 LEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERS 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARG
Sbjct: 250 IVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNILLATDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           ID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 310 IDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 503

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 190/343 (55%), Gaps = 7/343 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q + +AL   G    T+VQ   +   L   DV   +QTGSGKT+AF L +   L    
Sbjct: 10  IGQPLADALEAAGIKEPTAVQSEAIAALLAGADVTARSQTGSGKTLAFLLPMLEQL---- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
              S +SA  A+ +APT+ELA+Q+ R  +      G+ V   IGG ++ R+  +L+ +  
Sbjct: 66  --DSASSAVQAVVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAMSRQVENLKKHKP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ +   G+ L +S +  VV+DEAD++ +LG   +++ IL  + ++R++  F
Sbjct: 124 QLVVGTPGRIHELAAGRKLKLSSVTKVVIDEADQVFNLGSVREVDVILKGTSRERQVAFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    +  + + + ++   V+++   R    I +  ++V   D+ +    ++R     
Sbjct: 184 SATRPEEMAGMERKWMREPKLVDVSGTQRVAESIKHHFIVVDKRDKVDVARRLVRLINPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +   +++++   L    F V  L G+ ++Q RS  L   R G  ++ +ATDVAA
Sbjct: 244 AALLFLNDTENIAQWESKLRYEGFSVEMLYGDANKQRRSVTLDRFRSGSCKLLLATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+  L LVI+ +   + ++ +HR+GRTGR G+ G+ + +I
Sbjct: 304 RGLDIEGLPLVINLDPPIDADHYVHRAGRTGRMGKPGVVISII 346


>gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 467

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY   T +QE  +    + K++L  AQTG+GKT +F L +   + A+  +  
Sbjct: 12  ILRAITELGYSQPTPIQEKAIPVIFKGKNLLAGAQTGTGKTASFVLPILQ-MFADMPKIR 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
            A    AL + PTRELAVQV   +   YAK   + ++ + GGV    +++ L  G  I+V
Sbjct: 71  -AKRVRALILTPTRELAVQVEDNIAK-YAKYLPLTSMAMYGGVDAAPQKQRLIEGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + A++
Sbjct: 189 SKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+RGID
Sbjct: 249 FIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASRGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++
Sbjct: 309 IDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKD 350


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 191/363 (52%), Gaps = 10/363 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +         
Sbjct: 2   DVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINHQPFLERG 60

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + T
Sbjct: 61  DGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247
            +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++           
Sbjct: 180 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+RG
Sbjct: 240 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 359

Query: 365 VSV 367
            ++
Sbjct: 360 QAI 362


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 180/348 (51%), Gaps = 5/348 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 251 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 311 PHELE-LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+   +   + + L
Sbjct: 370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K+ V V I       SD+      V    + + ++ IL    
Sbjct: 430 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ- 488

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 489 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTGR G  G +  F  P+
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 596


>gi|297837071|ref|XP_002886417.1| hypothetical protein ARALYDRAFT_893124 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332258|gb|EFH62676.1| hypothetical protein ARALYDRAFT_893124 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 808

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 197/387 (50%), Gaps = 42/387 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS  G V +T VQ+A L+  L  KD LV A+TG+GK++AF L    T+L   +  +  
Sbjct: 351 KALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGNGV 410

Query: 73  S--APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
              AP+ AL + PTRELA Q+  E + L     G+ V   IGG     +++ L++    I
Sbjct: 411 HKVAPIFALILCPTRELASQIAAEGKALLKYHDGIGVQTLIGGTRFKLDQQRLESEPCQI 470

Query: 128 VVGTPGRLCDHIRGK-GLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++ TPGRL DHI  K GL   +  LK  ++DEAD +LDLGFR D+E I+D  P++R+ L+
Sbjct: 471 LIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLL 530

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-------------RAVLVALSDR 231
           FSATI            K+  RV+     R HS ID              ++ +VA  + 
Sbjct: 531 FSATIP-----------KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHES 579

Query: 232 DNAIV-NILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              +V ++L+ H         IVFCST    S    +L E    V  +     Q  R+  
Sbjct: 580 HFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLSVREIHARKPQLHRTRV 639

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
               ++ +  + + +DV+ARG++ PD+ LVI   + S+ E  +HR GRTGR G+ G  + 
Sbjct: 640 SDEFKESKRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLL 699

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAP 373
           +I        ER F +    +  EP P
Sbjct: 700 LIAP-----WERYFLDELKDLPLEPIP 721


>gi|296084100|emb|CBI24488.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 171/324 (52%), Gaps = 14/324 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----PLALAIAPTRELAVQV 90
           L   D++  A+TG GKT+AF L +  +L+   +R S  +     P  L + PTRELA QV
Sbjct: 7   LDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQV 66

Query: 91  GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
             + +      G+      GG     +   L+ G  IVVGTPGR+ DHI    ++ S LK
Sbjct: 67  YADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLK 126

Query: 151 AVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAITTLAKNYQKDAVRV- 207
             VLDEADEML +GF +D+E IL       K + L+FSAT+   +  ++  + K  ++  
Sbjct: 127 FRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTA 186

Query: 208 NIASENRQHSDIDYRAVLVALSD--RDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVL 264
           ++    +  +  + R +++  S   R   I +++R Y      I+F  T+ S S     L
Sbjct: 187 DLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASE----L 242

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
           A  L    AL G++ Q +R   L   R G+    +AT+VAARG+D+ D++L+I  E   +
Sbjct: 243 AGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRD 302

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI 348
            E  +HRSGRTGRAG  G++V + 
Sbjct: 303 VEAYIHRSGRTGRAGNSGVAVMLF 326


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 182/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 181/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMRFDKCTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
           SA   + ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V
Sbjct: 71  SAINCVIMSPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLSLGADVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   H+    +++S +   +LDEAD MLD+GF +DI  I    P   + +MFSAT
Sbjct: 131 IATPGRFISHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLPNTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+ V + +A  ++    I   A +   + +   + ++ +    K  I
Sbjct: 191 MPKKIEELAKTLLKNPVEIKLAV-SKPAEKIHQMAYVCYETQKMGILKDVFKGGNMKRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V R    L+        +  +L Q++R++ +   + G+  V +ATD+ +RGI
Sbjct: 250 IFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQVDVLVATDIVSRGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA   G ++ ++
Sbjct: 310 DIDDITMVINYDVPHDVEDYVHRIGRTARADHDGTAITLV 349


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 179/357 (50%), Gaps = 6/357 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +     LL    R 
Sbjct: 13  VLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRR- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A     L + PTRELA+QV  + + L   T + +    GGV        L     IVV
Sbjct: 72  -KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+
Sbjct: 131 ATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRWRKQTLLFSATL 190

Query: 190 SP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +     +  K+   ++     R+   I               ++  +    A+ +I
Sbjct: 191 EGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLKKILTEQAERSI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  ++     L +       + GE+ Q  R+NA+   R+G   + +ATDVAARGI
Sbjct: 251 VFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFREGSVNILLATDVAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           D+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++    Q M  R ER  +E
Sbjct: 311 DVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVERYIKE 367


>gi|183599789|ref|ZP_02961282.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
 gi|188022053|gb|EDU60093.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 186/339 (54%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+++GY   T++Q A +   +  +DVL SA TG+GKT AF L     LL    + S   
Sbjct: 18  ALADKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  + + L A   + +A   GGV+             IVV T G
Sbjct: 76  PPRVLILTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++FSAT+   A
Sbjct: 136 RLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTMLFSATLEGEA 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   ++   +D V ++  S  R+   I    YRA    L  +   + ++L+      +IV
Sbjct: 196 IRDFSERLLEDPVEIDAESSRRERKKIQQFYYRA--DNLQHKTALLCHLLKQEDVTKSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  V    + L +   +   L GE++Q +R+ A++ +  G+ +V +ATDVA+RG+D
Sbjct: 254 FVRKRERVREVVQWLRDAGIESCYLEGEMAQAKRNEAVRRLVTGQVKVLVATDVASRGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ++  V + ++S   +  LHR GRTGRAGRKG ++ +I
Sbjct: 314 IDNVSHVFNFDMSRTADVYLHRIGRTGRAGRKGTAISLI 352


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 182/359 (50%), Gaps = 12/359 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E  Y   T VQ   +   L  KD+L SA TG+GK+ AF L  A   L +  R  P  
Sbjct: 17  ALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP-ALQHLDDFPRREPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  E   L   T   V    GG+S       L     IVV TPG
Sbjct: 76  ARI-LILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++  +FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +     +   +   +N     R+   I    +RA    ++ + + + NIL    A+ +IV
Sbjct: 195 VEGFTADLLNEPAEINAEPSRRERKKITQWYHRAD--NMAHKIDLLKNIL-TEQAERSIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  ++     L         + GE++Q+ R+NA+   RDG   V IATDVAARGID
Sbjct: 252 FVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREANV 365
           LPD+  VI+ ++    +  LHR GRT RAG+KG +V +I    Q M  R  R  +E ++
Sbjct: 312 LPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERVGRYIKEDDI 370


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 201/384 (52%), Gaps = 27/384 (7%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEA+++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + + ++ E 
Sbjct: 59  LGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAGIMREQ 118

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P       PLAL ++PTREL+ Q+  E +    +TGV V V  GG  V+++ R+L+
Sbjct: 119 YVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPVNQQLRELE 178

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK 179
            G  ++V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 179 RGVDVLVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCG 238

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           RR  M FSAT    I  LA ++  + + + +         I  R   V  +D+ + ++++
Sbjct: 239 RRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETDKRSHLMDL 298

Query: 239 LRYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           L  H  +           +VF  T+         L  + F   ++ G+ SQQER  AL+ 
Sbjct: 299 L--HAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQEREMALRS 356

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     
Sbjct: 357 FKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFN 416

Query: 350 QN---MQRRAERLFREANVSV-VW 369
           +N   + R    L +EAN  V  W
Sbjct: 417 ENNLSLARPLADLMQEANQEVPAW 440


>gi|156546663|ref|XP_001603634.1| PREDICTED: similar to ENSANGP00000016791 [Nasonia vitripennis]
          Length = 1035

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 190/365 (52%), Gaps = 5/365 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    +  
Sbjct: 383 DVLRKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIL-DQPPLADG 441

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL + PTREL +Q+G++ +      G+      GG  +  +  +L+ GA I+V TP
Sbjct: 442 DGPIALIMTPTRELCMQIGKDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCTP 501

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT 
Sbjct: 502 GRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSATF 561

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V V +   +    D++   V++    +   ++ IL  +    +AI
Sbjct: 562 PRQMEALARRILTKPVEVQVGGRSVVCKDVEQHVVVLDDDLKFRKLLEILGHFQDKGSAI 621

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + +     K L +     ++L G + Q +R + +   + GR ++ +AT VAARG+
Sbjct: 622 IFVDKQENADTLLKDLMKASHSCMSLHGGIDQCDRDSTIMDFKAGRVKLLVATSVAARGL 681

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  + +R +  + R   ++ V
Sbjct: 682 DVKSLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITPDQERYSGDIVRAFELAGV 741

Query: 369 WEPAP 373
             P P
Sbjct: 742 PVPEP 746


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 186/366 (50%), Gaps = 10/366 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +    + + T++Q       L  ++++  AQTGSGKT+ F L  A   +  
Sbjct: 111 NFPDYVMSQIRRNSWQSPTAIQSQAWPIALSGRNLVGIAQTGSGKTLGFILP-AIVHVNH 169

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L + PTRELA QV  E+   + +   +   C+ GG     + RDL+ G
Sbjct: 170 QPYLEHGDGPIVLVLVPTRELAQQV-LEVSNEFGRASQLKTACVYGGAPKGPQLRDLERG 228

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I + TPGRL D +     N+     +VLDEAD MLD+GF   I  ILD     R+ LM
Sbjct: 229 AEICIATPGRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDRQTLM 288

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR--- 240
           +SAT    +  LA+ +  D ++VNI +     +    + + V +  +++  +V +L    
Sbjct: 289 WSATWPKEVRRLAEEFLNDYIQVNIGALQLTANHNILQIIDVCMDHEKEEKLVKLLNEIM 348

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+       + +    + V+++ G+ SQQER  AL   R+GR  + +A
Sbjct: 349 QEKENKTLIFVETKRKADDIARRMKRDGWPVLSIHGDKSQQERDWALNDFRNGRNPILVA 408

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE-- 357
           TDVA+RG+D+ D++ VI+ +  +  E+ +HR GRTGR+   G +  F  P N ++ ++  
Sbjct: 409 TDVASRGLDVEDIKFVINFDYPNCSEDYVHRIGRTGRSTNTGTAYTFFTPGNAKQASDLV 468

Query: 358 RLFREA 363
            + REA
Sbjct: 469 NVLREA 474


>gi|238882563|gb|EEQ46201.1| ATP-dependent rRNA helicase SPB4 [Candida albicans WO-1]
          Length = 631

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 194/379 (51%), Gaps = 36/379 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAEND 67
           I EA+S  GY  +T VQ + +      KDV+V A TGSGKT++F + +   +   L + D
Sbjct: 21  IKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPD 80

Query: 68  RFSPASAP------LALAIAPTRELAVQV----GRELEWLYAKTG--VVVAVCIGGVSVH 115
                  P      L++ ++PTRELA Q+     + L++L    G  +   + +G +   
Sbjct: 81  SDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNV 140

Query: 116 RERRD--LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           RE  +  L N   I++GTPGR+ + +   + +  S L+ V+LDEAD++LD  F  D+  I
Sbjct: 141 REDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINI 200

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLV 226
           L   PK+RR  +FSATIS A  T+ +    + V+V + S+N           +    +++
Sbjct: 201 LKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMI 260

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL--------AEHLFQVVALSGEL 278
               +   ++ IL  +  K AIV+  T  SV  F ++         ++   +  +L G+L
Sbjct: 261 NPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQL 320

Query: 279 SQQERSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           + + R   L     G       + + TDVAARGID+PD++LVI  +  ++P   LHR GR
Sbjct: 321 NTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGR 380

Query: 335 TGRAGRKGMSVFVIPQNMQ 353
           TGRA + G ++ ++  N Q
Sbjct: 381 TGRANKVGRAIVMLNDNCQ 399


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 178/351 (50%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 267 NLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYILDN 326

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +   + + + 
Sbjct: 327 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQLKTIH 386

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKK 179
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++    +P  
Sbjct: 387 SGCHILVATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTA 446

Query: 180 RRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ LMFSAT    I  LA  +  + + V + +    ++D+    + V   ++   +V  
Sbjct: 447 ERITLMFSATFPHEIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKAKLVEM 506

Query: 237 --NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              IL     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 507 CEEILISADDEKILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSEFRTGV 566

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + +AT V ARG+D+  + +V++ +L  + +  +HR GRTGR G +G+S+
Sbjct: 567 HNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSI 617


>gi|326433091|gb|EGD78661.1| eIF4AIII-PA [Salpingoeca sp. ATCC 50818]
          Length = 366

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 105/320 (32%), Positives = 172/320 (53%), Gaps = 7/320 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +   S L A +   +       L
Sbjct: 40  GFERPSAIQQRAIKPITKGRDVIAQAQSGTGKTATFSI---SALQAID---TTTRETQVL 93

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELAVQ+ + +  L     V    CIGG S+  + R L  G HIV GTPGR+ D 
Sbjct: 94  VLSPTRELAVQIQKVVLALGDYMSVQCHACIGGQSIGEDIRKLDYGQHIVSGTPGRVFDM 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML+ GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 154 IQRRNLRTRSIKMLILDEADEMLNEGFKEQIYDIYRYLPPATQVVLVSATLPHEVLEMTT 213

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VRV +  +      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 214 KFMTDPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTRRKV 273

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q++R+  +Q  R G  RV I TDV ARG+D+  + LVI
Sbjct: 274 DWLTEKMKEANFTVSSMHGDMPQKKRNEIMQEFRSGATRVLITTDVWARGLDVQQVSLVI 333

Query: 318 HAELSSNPENLLHRSGRTGR 337
           + +L +N E  +HR   +GR
Sbjct: 334 NYDLPNNRELYIHRPRSSGR 353


>gi|54303428|ref|YP_133421.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916858|emb|CAG23621.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 385

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 6/316 (1%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELE 95
           K+++ +AQTG+GKT +F L L    L +     P  A    AL + PTRELAVQV   + 
Sbjct: 4   KNLIAAAQTGTGKTASFVLPL----LEKFSDMPPIRAKRIRALILVPTRELAVQVDANIT 59

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                  +      GGV    +++ L +G  I+V TPGRL D    + L+   L+ +VLD
Sbjct: 60  QYSKHLSLTSLAMYGGVDYKDQKQRLIDGVDILVATPGRLLDMYTQRALHFDELEVLVLD 119

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD MLD+GF +DI  IL+  PK+R+ L+FSAT+S  +  LAK   +  V ++++ ++  
Sbjct: 120 EADRMLDMGFIEDINKILERLPKERQNLLFSATLSDQVRVLAKTAVERPVEISVSPDSAT 179

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              ID   + V    +   + ++++ +  K A++F  T+   ++    L +      A+ 
Sbjct: 180 TPQIDQWLITVDKDKKSALLSHMIKENEWKQALIFIQTKHGAAKLVSQLEKRGIAAEAIH 239

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  SQ  R   L   + G   + +AT +AARGID+ DL  VI+ +L    ++ +HR GRT
Sbjct: 240 GGRSQAVREKLLNDFKSGELGLLVATGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRT 299

Query: 336 GRAGRKGMSVFVIPQN 351
           GRAG  G ++  + ++
Sbjct: 300 GRAGATGEAISFVSRD 315


>gi|68475061|ref|XP_718416.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|68475598|ref|XP_718147.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|241948159|ref|XP_002416802.1| ATP-dependent RNA helicase eif4A, putative; eukaryotic initiation
           factor 4A, putative [Candida dubliniensis CD36]
 gi|2500523|sp|P87206|IF4A_CANAL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|2190248|dbj|BAA20371.1| translation initiation factor [Candida albicans]
 gi|46439903|gb|EAK99215.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|46440181|gb|EAK99490.1| likely translation initiation factor eIF4A subunit [Candida
           albicans SC5314]
 gi|223640140|emb|CAX44387.1| ATP-dependent RNA helicase eif4A, putative [Candida dubliniensis
           CD36]
 gi|238879373|gb|EEQ43011.1| eukaryotic initiation factor 4A [Candida albicans WO-1]
          Length = 397

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 168/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN++     A  AL
Sbjct: 42  GYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRINENEK-----ATQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D 
Sbjct: 96  ILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  +LDEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V L D + + + ++        A++FC+TR+ V
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L E  F V A+  +L Q ER   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 276 EFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANKENYIH 348


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 181/345 (52%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   + +A        I  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNNPSEIKLAVSKPAEKII--QAAYVCYENQKLGIIRSLFMDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 VFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQ 353


>gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767]
 gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii]
          Length = 630

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 173/327 (52%), Gaps = 13/327 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA---------PLALAIAPTRELAV 88
           +D++  AQTGSGKT  F   + S          P +A         P AL +APTREL  
Sbjct: 194 RDLMACAQTGSGKTGGFLFPVLSESYMNGPAEVPETAGAFSSHKVYPTALVMAPTRELVS 253

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+  E +    ++ V  +V  GG  +  + R+L+ G  ++V TPGRL D +    ++++ 
Sbjct: 254 QIFDEAKKFAYRSWVRPSVVYGGADIGGQIRNLERGCDLLVATPGRLKDLLERGRVSLAS 313

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLMFSATISPAITTLAKNYQKDA 204
           +K +VLDEAD MLD+GF   I  I+        + R+ LMFSAT    I  LA+++ K+ 
Sbjct: 314 IKYLVLDEADRMLDMGFEPQIRHIVQECDMPGVEDRQTLMFSATFPKEIQFLARDFLKEY 373

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           + +++        +I  + + V   ++ + ++++L  +     I+F  T+         L
Sbjct: 374 IFLSVGRVGSTSENITQKILYVEDEEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFL 433

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
            +  F   A+ G+ SQ ER  AL   + G A + +AT VAARG+D+P++  +++ +L S+
Sbjct: 434 YDQGFPATAIHGDRSQYEREKALAAFKTGTAPILVATAVAARGLDIPNVSHIVNYDLPSD 493

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQN 351
            ++ +HR GRTGRAG  G++     +N
Sbjct: 494 IDDYVHRIGRTGRAGNIGIATAFFNRN 520


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 192/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 272 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 330

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 331 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGSQMRDLQRG 389

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 390 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 449

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  + ++L   Y
Sbjct: 450 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIY 509

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 510 DTSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 569

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 570 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 629

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 630 LVDVLREANQEI 641


>gi|167622895|ref|YP_001673189.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352917|gb|ABZ75530.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 413

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/325 (34%), Positives = 183/325 (56%), Gaps = 5/325 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  AQTGSGKT AFGL L  T++  ND         AL + PT
Sbjct: 24  TEIQGLAIPEVLAGRDLLALAQTGSGKTYAFGLPLLQTII--NDAVESREVK-ALVLVPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L+ + A T + V +C GGV    + ++L+ G  ++V TPGRL D +R + 
Sbjct: 81  RELALQVAEALKLVSASTEITV-LC-GGVDKAEQLKELEQGPQLIVATPGRLLDLLRQQQ 138

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++  +K +VLDEAD ++++GF  DIE IL+  P KR+ L+FSAT++P +   A     +
Sbjct: 139 LSLKSVKQLVLDEADRLMEMGFWPDIERILEFVPAKRQTLLFSATLAPELNDKALKLLHN 198

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             ++   + N   +DI+    +V   D+  A++ +++ H     +VF + R    +  K 
Sbjct: 199 PKKIAAQAVNSVVADINESLYIVNKGDKARALIALIKQHKWSQVLVFINGRDDADKLAKR 258

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +     +AL G+   Q+R   L+  +    +V + TD+ +RGI +  L +VI+ +L S
Sbjct: 259 LVKADINAMALHGDKEHQQRQQTLEAFKACELQVLVTTDLLSRGIHIDALPVVINIDLPS 318

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +    +HR GRT RAG  G+++ ++
Sbjct: 319 SAPVYVHRIGRTARAGDNGIAISLV 343


>gi|114590936|ref|XP_001155860.1| PREDICTED: similar to initiation factor 4AII isoform 3 [Pan
           troglodytes]
          Length = 361

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 8/329 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRS 332
            ARGID+  + LVI+ +L +N EN +HR+
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHRN 361


>gi|258622228|ref|ZP_05717254.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585552|gb|EEW10275.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 434

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 46  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 98

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 99  RELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFD-LTQSG 157

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 158 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRA 217

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 218 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADGLTKK 277

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 278 LNKAGIVATALHGDKSQAEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVINFELPM 337

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G+++ ++
Sbjct: 338 HAETYVHRVGRTARAGQQGIALSLV 362


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 181/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L   D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 24  GLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNP 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ GA +V+ TP
Sbjct: 84  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 144 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L        IV
Sbjct: 204 SHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRTIV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 264 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 324 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 359


>gi|238796726|ref|ZP_04640232.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
 gi|238719457|gb|EEQ11267.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
          Length = 441

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/340 (34%), Positives = 181/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL    + S  
Sbjct: 17  DALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI    +    + V +      R+   I    YRA    +  +   +V++L+    + +I
Sbjct: 195 AIREFGERILNEPVELEADPSRRERKKIQQWYYRAD--DIEHKTALLVHLLKQPEVQKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDVA+RG+
Sbjct: 253 IFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++
Sbjct: 313 DIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLV 352


>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus]
          Length = 677

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 204/374 (54%), Gaps = 17/374 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N P+++ E + ++G+   + +Q       L  +D++  AQTG+GKT+AF   L   L+
Sbjct: 262 FQNYPEILRE-IQKQGFTKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAF---LLPALI 317

Query: 64  AENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             + + +P      P  L +APTRELA+Q+ +E+   Y+  G+  AVC+ G    +E+ +
Sbjct: 318 HIDGQITPRDERPGPNVLVMAPTRELALQIEKEVG-KYSYRGIK-AVCVYGGGNRKEQIN 375

Query: 121 L-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +   G  IV+ TPGRL D ++   LN+S +  ++LDEAD MLD+GF   I   L      
Sbjct: 376 IVTKGVQIVIATPGRLNDLVQAGVLNVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPD 435

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVN 237
           R+ +M SAT    +  LA++Y K+ ++V + S +    H+ +  +  ++   ++ + +  
Sbjct: 436 RQTVMTSATWPQGVRRLAQSYMKNPIQVCVGSLDLAAVHT-VTQKICMINEDEKLDMMHQ 494

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             R  G+ +  IVF   +A V   +  LA       ++ G+  Q +R  AL+ ++ G  +
Sbjct: 495 FFREMGSYDKVIVFFGKKAKVDDISSDLALSKIDCQSIHGDREQADREQALEDLKTGAVQ 554

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           + +ATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+ F+  Q+    
Sbjct: 555 ILLATDVASRGIDIEDITHVLNYDFPKDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHA 614

Query: 356 AE--RLFREANVSV 367
            E   +  EAN  V
Sbjct: 615 KELINILEEANQEV 628


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQVI EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PQVI-EALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSH-- 74

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA      + P AL +APTRELAVQ+  + E L   +G+ + +  GG    ++ + L
Sbjct: 75  ---PAPEGRQVNQPRALILAPTRELAVQIHADAEPLAQISGLKIGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           ++G  +++ T GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 ESGVDVLIATTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L     G   + +
Sbjct: 252 EEEWPDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSI 357


>gi|68490068|ref|XP_711155.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|68490105|ref|XP_711137.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|74656094|sp|Q59N29|SPB41_CANAL RecName: Full=ATP-dependent rRNA helicase SPB41
 gi|46432415|gb|EAK91898.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432434|gb|EAK91916.1| potential SPB4-like DEAD box RNA helicase [Candida albicans SC5314]
          Length = 631

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 194/379 (51%), Gaps = 36/379 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAEND 67
           I EA+S  GY  +T VQ + +      KDV+V A TGSGKT++F + +   +   L + D
Sbjct: 21  IKEAISSMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPD 80

Query: 68  RFSPASAP------LALAIAPTRELAVQV----GRELEWLYAKTG--VVVAVCIGGVSVH 115
                  P      L++ ++PTRELA Q+     + L++L    G  +   + +G +   
Sbjct: 81  SDGDLPEPVKRGHMLSIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNV 140

Query: 116 RERRD--LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           RE  +  L N   I++GTPGR+ + +   + +  S L+ V+LDEAD++LD  F  D+  I
Sbjct: 141 REDLNQFLTNQPQILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINI 200

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDYRAVLV 226
           L   PK+RR  +FSATIS A  T+ +    + V+V + S+N           +    +++
Sbjct: 201 LKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMI 260

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL--------AEHLFQVVALSGEL 278
               +   ++ IL  +  K AIV+  T  SV  F ++         ++   +  +L G+L
Sbjct: 261 NPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQL 320

Query: 279 SQQERSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           + + R   L     G       + + TDVAARGID+PD++LVI  +  ++P   LHR GR
Sbjct: 321 NTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGR 380

Query: 335 TGRAGRKGMSVFVIPQNMQ 353
           TGRA + G ++ ++  N Q
Sbjct: 381 TGRANKVGRAIVMLNDNCQ 399


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF L + + +        P S      
Sbjct: 316 YDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLLPILNQMYEHGISSPPQSNRQYSR 375

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 376 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 435

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 436 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 494

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 495 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLSSIRDG 554

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 555 PEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 614

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 615 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 661


>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
 gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
          Length = 408

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 181/361 (50%), Gaps = 22/361 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ ++FSAT+    
Sbjct: 135 RLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTMLFSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRA-----VLVALSDRDNAIVNILRYHGA 244
           +     +   D   ++     R+   I    YRA      L  L D    I+N    + A
Sbjct: 195 VEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLALLKD----IIN----NQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 875

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 38/377 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I + +++ GY   + +Q   +   L+ +DV+  AQTGSGKT AF + L   +    
Sbjct: 446 LPTEILDIITDLGYTEPSPIQRQAIPIGLQNRDVIGIAQTGSGKTAAFVIPLLVWVSRIP 505

Query: 67  DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R    +    P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 506 RRLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQAFQLRL 565

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  I++ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ +LD  P      
Sbjct: 566 GCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFPVSNMRP 625

Query: 178 -----------------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVN 208
                                        + R+ +MF+AT+ P +  LA+ Y +    V 
Sbjct: 626 TDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMRKPAVVT 685

Query: 209 IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
           I S  +    +     ++  +++   ++ IL         +F + +       K L +  
Sbjct: 686 IGSAGQTVDQVTQVVEIMTEANKRKRLLEILGEEHEPPIFIFVNQKKGCDLLAKSLEKLG 745

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           ++V +L G  +Q++R  AL   + G   + +ATDVA RGID+ D+ LVI+ ++S   +  
Sbjct: 746 YRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINYDMSKTVQEY 805

Query: 329 LHRSGRTGRAGRKGMSV 345
            HR GRTGRAG+KG+++
Sbjct: 806 THRIGRTGRAGKKGLAI 822


>gi|149244076|ref|XP_001526581.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032533|sp|A5DVM3|IF4A_LODEL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146448975|gb|EDK43231.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 397

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 190/346 (54%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN++     +  AL
Sbjct: 42  GYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRIDENEK-----STQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D 
Sbjct: 96  ILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  +LDEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V + D + + +V++        A++FC+TR+ V
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQYFINVEVEDYKFDCLVDLYDSISVTQAVIFCNTRSKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L E  F V A+  +L Q ER   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 276 EFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 336 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTDKDVGMMREIEKFY 381


>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654494|sp|Q9HGM5|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
 gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe]
          Length = 453

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 188/341 (55%), Gaps = 21/341 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLALAIAP 82
           T +QE ++   L  ++ +  A+TGSGKT AF L +        +++S   S   AL + P
Sbjct: 31  TDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII-------EKWSKDPSGIFALILTP 83

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA+Q+  +   L A   +  A+ +GG+ + R+  DL    H+VV TPGRL D IR  
Sbjct: 84  TRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSN 143

Query: 143 G----LNISHLKAVVLDEADEMLDLGFRDDIE--FILDSSPKKRRMLMFSATISPAITTL 196
           G      +  +K +V+DEAD +L   F DD++  F +  + + R+ L+F+AT++ AI  L
Sbjct: 144 GEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203

Query: 197 A----KNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIV 249
                KN +       + ++N    S +    + V+   R+  +V++L    +  K+AI+
Sbjct: 204 KYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAII 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +   +      +L     +V  L  E+ Q+ER N+L   R   A++ +ATDVA+RG+D
Sbjct: 264 FVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLD 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +P ++LVI+ +L  +P++ +HR GRT RAGR G S+ ++ +
Sbjct: 324 IPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTE 364


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/349 (34%), Positives = 187/349 (53%), Gaps = 14/349 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSP 71
           +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +    + +     +FS 
Sbjct: 268 VTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMTDGVAASKFSE 327

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTREL  Q+  E       T V   V  GG++     R++  G +++  T
Sbjct: 328 IQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNVLCAT 387

Query: 132 PGRLCDHI-RGKGLNISHLKAVVLDEADEMLDL--GFRDDIEFILDS----SPKKRRMLM 184
           PGRL D I RGK + +S ++ +VLDEAD MLD+  GF  D+  ++ S    S + R+ LM
Sbjct: 388 PGRLHDLIGRGK-IGLSKVRYLVLDEADRMLDMDMGFEPDMRKLVGSPGMPSKEDRQTLM 446

Query: 185 FSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  +A ++ K D + + +       SD++   V V  + RD  ++ +LR  G
Sbjct: 447 FSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVTSTKRDQ-LLELLRSTG 505

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +AT V
Sbjct: 506 NERTMVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKALSDFRTGQCPVLVATSV 565

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           AARG+D+  ++ V++ +L S+ +  +HR GRTGR G  G +V F  P++
Sbjct: 566 AARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFNPES 614


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 182/349 (52%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTATVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 362


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 180/342 (52%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++E+GY + T +Q   +   L +++++ +AQTG+GKT +F L +   L  +E  R 
Sbjct: 12  IVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPILEMLSKSETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A   L + PTRELAVQV   +        +      GGV    +R  L  G  I+V
Sbjct: 72  KRIRA---LILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERLIQGVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   L+ +VLDEAD MLD+GF +DI  I++  P  R+ L+FSAT+
Sbjct: 129 ATPGRLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINKIIEKLPVDRQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA+      + +++         I+   V V    +   + ++++ +  + A++
Sbjct: 189 SRQVKELARATITRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +       + G  SQ+ R   L   + G+  + IAT +AARG+D
Sbjct: 249 FIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLLIATGIAARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L LVI+ +L    +  +HR GRTGRAG  G +V ++ ++
Sbjct: 309 IDELPLVINYDLPYPADEYIHRIGRTGRAGANGEAVALVSKD 350


>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
 gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 181/361 (50%), Gaps = 22/361 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ ++FSAT+    
Sbjct: 135 RLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTMLFSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRA-----VLVALSDRDNAIVNILRYHGA 244
           +     +   D   ++     R+   I    YRA      L  L D    I+N    + A
Sbjct: 195 VEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLKD----IIN----NQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|17507945|ref|NP_491962.1| hypothetical protein H27M09.1 [Caenorhabditis elegans]
 gi|7206748|gb|AAF39907.1| Hypothetical protein H27M09.1 [Caenorhabditis elegans]
          Length = 630

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 9/340 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASA 74
           ++G V  T++Q   +   L  +D++  A TGSGKT+ F L L    L +  +  F  +  
Sbjct: 207 QKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEG 266

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRERRDLQNGAHIV 128
           P  L I P+RELA Q+   +  ++   G      +   +CIGGV +  + +D+++G HIV
Sbjct: 267 PFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIV 326

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  K +N+   + +VLDEAD MLD+GF D+I+ I      +R+ L+FSAT
Sbjct: 327 VATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSAT 386

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I   AK+     + VN+        ++      V   ++   ++  L+    K  +
Sbjct: 387 MPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTSPK-VL 445

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +  V    + L     +V ++ G   Q +R   ++  R     V +ATDVA++G+
Sbjct: 446 IFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGL 505

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D   +E VI+ ++  + EN +HR GRTGR+GRKG++   I
Sbjct: 506 DFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFI 545


>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
           jacchus]
          Length = 764

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 211/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 192 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 249

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P   P+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 250 ---YKPRRGPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALRA 306

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 307 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 366

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 367 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 422

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 423 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQI 482

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 483 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKM 542

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 543 LKEIVKAAKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEM 591


>gi|293341170|ref|XP_002724862.1| PREDICTED: rCG21751-like [Rattus norvegicus]
 gi|293352561|ref|XP_002728010.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Rattus
           norvegicus]
 gi|149063251|gb|EDM13574.1| rCG21751, isoform CRA_b [Rattus norvegicus]
          Length = 600

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/361 (33%), Positives = 194/361 (53%), Gaps = 23/361 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+G AL E G++++T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PLVLG-ALRELGFLHMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASYVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ---VVALSGELSQQERSNALQM 289
           N +V+ LR    +  +VF ST A V  + K L E L Q   ++ + G++ + +R+     
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKAL-EALVQRVKILCIHGKM-KYKRNKIFME 313

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
            R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++
Sbjct: 314 FRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLL 373

Query: 349 P 349
           P
Sbjct: 374 P 374


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 176/346 (50%), Gaps = 9/346 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   + + G+VN T +Q       L  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 184 LPDYIMVEIQKAGFVNPTPIQVQGWPVALCGRDMVGIAETGSGKTLAF-LLPAVVHINAQ 242

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA+Q+  E +   + + +    C GGV    + R LQNG  
Sbjct: 243 PYLQKGDGPIVLVLAPTRELALQIKEECDRFGSSSRISNTCCYGGVPRGPQARMLQNGVE 302

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+S
Sbjct: 303 ICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQTLMWS 362

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA++   ++ V V +        +I     +V  + +   +  ++R   + 
Sbjct: 363 ATWPKDVQQLARDLCNEEPVHVTVGRSGHACHNIQQFVEVVEENGKAERLQALMRAVASA 422

Query: 246 N-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A++F  T+      T+VL    +  +A+ G+  Q ER   L   + GR  + 
Sbjct: 423 SGGVWESKALIFTDTKRCADDITRVLRRDGWPALAIHGDKKQTERDWVLAEFKTGRMPIM 482

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +
Sbjct: 483 IATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTA 528


>gi|162418242|ref|YP_001605106.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165926343|ref|ZP_02222175.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939710|ref|ZP_02228253.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009474|ref|ZP_02230372.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213643|ref|ZP_02239678.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402073|ref|ZP_02307552.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420915|ref|ZP_02312668.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425993|ref|ZP_02317746.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|270488784|ref|ZP_06205858.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294505532|ref|YP_003569594.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
 gi|162351057|gb|ABX85005.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165912400|gb|EDR31034.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921867|gb|EDR39064.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991396|gb|EDR43697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205316|gb|EDR49796.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961044|gb|EDR57065.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048547|gb|EDR59955.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055141|gb|EDR64940.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262363598|gb|ACY60319.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D106004]
 gi|262367526|gb|ACY64083.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D182038]
 gi|270337288|gb|EFA48065.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294355991|gb|ADE66332.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
          Length = 423

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P V+ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 13  PLVV-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 71

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 72  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 130 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 189

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 190 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 249

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 250 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 310 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 352


>gi|45442928|ref|NP_994467.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45437795|gb|AAS63344.1| putative DEAD-box helicase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 422

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/343 (33%), Positives = 182/343 (53%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           P V+ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PLVV-EALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 77  EEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  
Sbjct: 135 VDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 191/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + EA+  + +   T +Q       L   D++  A TGSGKT+++ L      +   
Sbjct: 99  FPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSY-LLPGIVHINHQ 157

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G 
Sbjct: 158 PFLQRGDGPILLVLAPTRELAQQV-QQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+++ +D V +NI + E   + +I     +    ++D+ +V ++     
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 336

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +   
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 457 VLREANQAI 465


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 175/329 (53%), Gaps = 8/329 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P SA   + ++PT
Sbjct: 7   TPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKLA---DGGYPESAINCVIMSPT 63

Query: 84  RELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIVVGTPGRLCDHI 139
           RELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA +V+ TPGR   HI
Sbjct: 64  RELAQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALGADVVIATPGRFISHI 123

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               +++S +   +LDEAD MLD+GF DDI  I    P   + +MFSAT+   I  LAK 
Sbjct: 124 SLGNVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKIEELAKT 183

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             K+ V + +A  ++    I   A +   + +   I +I +    K  I+F  ++  V +
Sbjct: 184 LLKNPVEIKLAV-SKPAEKIQQTAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQ 242

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L         +  +L Q++R++ +   + G+  V +ATD+ +RGID+ D+ +VI+ 
Sbjct: 243 IAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDIAMVINY 302

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  + E+ +HR GRT RA R G ++  +
Sbjct: 303 DVPHDAEDYVHRIGRTARADRDGKAITFV 331


>gi|315042486|ref|XP_003170619.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
 gi|311344408|gb|EFR03611.1| ATP-dependent RNA helicase eIF4A [Arthroderma gypseum CBS 118893]
          Length = 396

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMSVDCHACIGGTNVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+ P +  +  
Sbjct: 156 IQRRVLKTDHIKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPPDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLQARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 185/350 (52%), Gaps = 10/350 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-END 67
           Q +  AL ++GY   T++Q A +   +  +D+L S+ TG+GKT A+ L +   LL     
Sbjct: 20  QSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVIQHLLDFPRK 79

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R  P   P  L + PTRELA+QV  + + L   T + +A   GGVS             I
Sbjct: 80  RSGP---PRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNHAEIFSENQDI 136

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++FSA
Sbjct: 137 VVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETRWRKQTMLFSA 196

Query: 188 TIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T++  AI   A+    +   ++     R+   I    YRA    L  +   + ++L+   
Sbjct: 197 TLAGEAIHDFAERLLNNPHEIDADPSRRERKKIQQYYYRA--DNLEHKTALLCHLLKQPD 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  +I+F   R       + L +   +   L GE+ Q +R+ A++ +  G+  V +ATDV
Sbjct: 255 ASKSIIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINVLVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           A+RG+D+ D+  V + +L    +  LHR GRT RAGRKG+++ ++  + Q
Sbjct: 315 ASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGIAISLVEAHDQ 364


>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
          Length = 408

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/361 (33%), Positives = 181/361 (50%), Gaps = 22/361 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ ++FSAT+    
Sbjct: 135 RLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTMLFSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRA-----VLVALSDRDNAIVNILRYHGA 244
           +     +   D   ++     R+   I    YRA      L  L D    I+N    + A
Sbjct: 195 VEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLKD----IIN----NQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|146104248|ref|XP_001469774.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074144|emb|CAM72886.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503544|emb|CBZ38630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 658

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 197/367 (53%), Gaps = 10/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++     E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +     
Sbjct: 172 PHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSG- 230

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F P++   A+ I PTREL +Q+ G  L+ L    G +    CIGG S ++E   L NG 
Sbjct: 231 -FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGV 289

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV +PGRL DH++     +  +L  + +DEAD +LD GF +D+  I+   PK R+  +
Sbjct: 290 MIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQTFL 349

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ K  + +++ S+  + +   ++   V+ A   R   + + ++ 
Sbjct: 350 FSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFVKK 409

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V   T
Sbjct: 410 NLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLFTT 469

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +   + L+
Sbjct: 470 DVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-ELFLKYLY 528

Query: 361 REANVSV 367
            +A V V
Sbjct: 529 DDAKVKV 535


>gi|52081051|ref|YP_079842.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52786429|ref|YP_092258.1| YqfR [Bacillus licheniformis ATCC 14580]
 gi|52004262|gb|AAU24204.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52348931|gb|AAU41565.1| YqfR [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 12/340 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+   T +Q+ ++   L+ +  +  +QTG+GKT A+ L L S       R  
Sbjct: 15  IIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLS-------RID 67

Query: 71  PASAPLALAI-APTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           P    + + I APTRELA Q+ +E+    ++L     +     IGG    +    L+   
Sbjct: 68  PEKEFVQVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSIDKLKTQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D IR + L++    + V+DEAD MLD+GF +D++FI    P+  +ML+F
Sbjct: 128 HLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEGLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y  +    ++  ++     I++  +     D++  ++ ++ +    
Sbjct: 188 SATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKNELLLEVMTHLNPY 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +T+ +       L +   +V  L G L+ +ER   ++ + D      IATD+AA
Sbjct: 248 LAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFTYIIATDLAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ EL  + +  +HR GRT RAG  G +V
Sbjct: 308 RGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAV 347


>gi|168051595|ref|XP_001778239.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670336|gb|EDQ56906.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 480

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 181/343 (52%), Gaps = 13/343 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ   L   L+  DVL  A+TG+GKTVAF L    ++L E  R    ++   L
Sbjct: 32  GFDTMTVVQNETLPVILKGTDVLARAKTGTGKTVAFLLPAIESILREGSRKVKRNSINVL 91

Query: 79  AIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLC 136
           AI PTRELA QV  E + L      + V V IGG ++  E   LQ     I+VGTPGRL 
Sbjct: 92  AICPTRELATQVAAEAKMLTTFHRDLGVQVVIGGTNMATESARLQRSPCQILVGTPGRLL 151

Query: 137 DHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           DHI   R     +  LK ++LDEAD++LD+GFR  +  I+ + P +R+ L+FSAT+   +
Sbjct: 152 DHIQSDRAVRSQLEDLKVLILDEADQLLDMGFRKSLNGIIKALPTERQTLLFSATVPNEV 211

Query: 194 TTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---- 246
            ++ +   +K    ++   E+    H  +    +LV L  + + +  +L+ H  ++    
Sbjct: 212 KSMCEIALKKGYTYIDTVGEDNVETHMKVQQEYLLVPLEKQLSILYALLKEHAVEDPDFK 271

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-DVAA 305
            +VFC++    + F +   +     + +    SQ  R+ A    R+    V + T DV+A
Sbjct: 272 VLVFCTSAKCTALFAEFYKKLGMNTLEIHSRKSQSFRTKASNEFRNHPGGVIMFTSDVSA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D PD+  V+     ++ E  +HR GRTGRAG++G  + ++
Sbjct: 332 RGVDYPDVTFVVQVGTPASREQYIHRLGRTGRAGKEGRGLLLL 374


>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
          Length = 796

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 211/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 399 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 454

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 455 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 514

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++  HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 515 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKM 574

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 623


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 191/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + EA+  + +   T +Q       L   D++  A TGSGKT+++ L      +   
Sbjct: 99  FPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSY-LLPGIVHINHQ 157

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G 
Sbjct: 158 PFLQRGDGPILLVLAPTRELAQQV-QQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+++ +D V +NI + E   + +I     +    ++D+ +V ++     
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 336

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +   
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 457 VLREANQAI 465


>gi|322490766|emb|CBZ26030.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 658

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 197/367 (53%), Gaps = 10/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++     E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +     
Sbjct: 172 PHIVSALEQEFKFRELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSG- 230

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F P++   A+ I PTREL +Q+ G  L+ L    G +    CIGG S ++E   L NG 
Sbjct: 231 -FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGV 289

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV +PGRL DH++     +  +L  + +DEAD +LD GF +D+  I+   PK R+  +
Sbjct: 290 MIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQTFL 349

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ K  + +++ S+  + +   ++   V+ A   R   + + ++ 
Sbjct: 350 FSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFVKK 409

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V   T
Sbjct: 410 NLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLFTT 469

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +   + L+
Sbjct: 470 DVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-ELFLKYLY 528

Query: 361 REANVSV 367
            +A V V
Sbjct: 529 DDAKVKV 535


>gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01]
 gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01]
          Length = 411

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 184/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   GY   TS+Q+  +   LR ++++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L +G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIDGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +     +V
Sbjct: 189 SNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 191/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 311 LPDYVMKEIRRQGYKEPTPIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINNQ 369

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 370 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 428

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 429 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 488

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     +++ + ++L   Y 
Sbjct: 489 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEDKLKSLLSDIYD 548

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 549 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 608

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 609 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 668

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 669 VDVLREANQEI 679


>gi|74003456|ref|XP_860391.1| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 4 [Canis familiaris]
 gi|114590940|ref|XP_001155920.1| PREDICTED: similar to initiation factor 4AII isoform 4 [Pan
           troglodytes]
 gi|114590942|ref|XP_001156431.1| PREDICTED: similar to initiation factor 4AII isoform 10 [Pan
           troglodytes]
          Length = 360

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHR 331
            ARGID+  + LVI+ +L +N EN +HR
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIHR 360


>gi|116200971|ref|XP_001226297.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
 gi|118575173|sp|Q2GUI4|DBP3_CHAGB RecName: Full=ATP-dependent RNA helicase DBP3
 gi|88176888|gb|EAQ84356.1| hypothetical protein CHGG_08370 [Chaetomium globosum CBS 148.51]
          Length = 566

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 197/363 (54%), Gaps = 35/363 (9%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-------AENDRFSPA 72
           +   T +Q A     L  +DV+  A+TGSGKT+AF +    +L        A+ DR + A
Sbjct: 201 FTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSPKPNHAKGDRTAYA 260

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QNGAHIVV 129
            A   + ++PTRELA+Q    +  L +  G+ V VC+ G +   ++R L    +GA I+V
Sbjct: 261 RA---VVVSPTRELAMQTHAAMSSLASLVGLSV-VCLYGGAPKDDQRALLRKNSGADIIV 316

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PK-KRRMLMFSA 187
            TPGRL D +    +++S +   VLDEAD MLD GF +DI+ IL S  P+ KR+ LMF+A
Sbjct: 317 ATPGRLKDFLSEGCVSLSDVMFAVLDEADRMLDKGFEEDIKLILGSCRPREKRQTLMFTA 376

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSD--------------IDYRAVLVALSDRDN 233
           T   ++  LA+ +  D V+  I +  R   +              I+ +  +V    ++ 
Sbjct: 377 TWPTSVRGLAEGFMIDPVKATIGNRTRAGEEGEGNGSTELQANIRIEQKVEVVDPRGKEQ 436

Query: 234 AIVNILRYH---GAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            ++ +L+      AKN   +VFC  +    R  + L     +V ++ G+L Q +R+ +L+
Sbjct: 437 RLLELLKEAQKGSAKNDRILVFCLYKKEAVRVEQNLERRGIRVCSIHGDLRQDQRTRSLE 496

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   V +ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG+KG ++ + 
Sbjct: 497 SFKAGTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLF 556

Query: 349 PQN 351
            ++
Sbjct: 557 TEH 559


>gi|22124274|ref|NP_667697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis KIM 10]
 gi|51594521|ref|YP_068712.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806147|ref|YP_650063.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Antiqua]
 gi|108810260|ref|YP_646027.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Nepal516]
 gi|145600737|ref|YP_001164813.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Pestoides F]
 gi|153947434|ref|YP_001399175.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|153997075|ref|ZP_02022208.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|170026246|ref|YP_001722751.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis YPIII]
 gi|186893519|ref|YP_001870631.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis PB1/+]
 gi|218930872|ref|YP_002348747.1| ATP-dependent RNA helicase RhlB [Yersinia pestis CO92]
 gi|229837202|ref|ZP_04457367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229839562|ref|ZP_04459721.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900125|ref|ZP_04515262.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900428|ref|ZP_04515557.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|32363372|sp|Q8ZAD8|RHLB_YERPE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56749471|sp|Q66G19|RHLB_YERPS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122979817|sp|Q1CBQ4|RHLB_YERPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123073645|sp|Q1CNK3|RHLB_YERPN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040087|sp|A4TRC8|RHLB_YERPP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040117|sp|A7FD47|RHLB_YERP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739238|sp|B2K046|RHLB_YERPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739239|sp|B1JQ11|RHLB_YERPY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21957043|gb|AAM83948.1|AE013636_6 putative ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|51587803|emb|CAH19405.1| putative DEAD-box helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108773908|gb|ABG16427.1| DEAD-box helicase [Yersinia pestis Nepal516]
 gi|108778060|gb|ABG12118.1| putative DEAD-box helicase [Yersinia pestis Antiqua]
 gi|115349483|emb|CAL22456.1| putative DEAD-box helicase [Yersinia pestis CO92]
 gi|145212433|gb|ABP41840.1| DEAD-box helicase [Yersinia pestis Pestoides F]
 gi|149289381|gb|EDM39459.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|152958929|gb|ABS46390.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|169752780|gb|ACA70298.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696545|gb|ACC87174.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682447|gb|EEO78534.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229686905|gb|EEO78984.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695928|gb|EEO85975.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706145|gb|EEO92154.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320013530|gb|ADV97101.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AEN 66
           ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   AE 
Sbjct: 19  LVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEE 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 79  GRQT--NQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  ++
Sbjct: 137 ILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|255089893|ref|XP_002506868.1| predicted protein [Micromonas sp. RCC299]
 gi|226522141|gb|ACO68126.1| predicted protein [Micromonas sp. RCC299]
          Length = 486

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 191/373 (51%), Gaps = 30/373 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP--- 75
           GY + T+VQ+  L P L+  DVL  A+TGSGKT+AF +    TLL      SPA      
Sbjct: 9   GYTHATAVQDQTLPPILKGLDVLARAKTGSGKTIAFLVPSIETLLR-----SPAGRAGDV 63

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGR 134
             L ++PTRELA Q+  E   L     +   V  GG ++  ER  + +     +V TPGR
Sbjct: 64  SVLVLSPTRELASQIHEESLKLLKFHALKSQVVFGGTNIKSERSRMNSQRCDFLVATPGR 123

Query: 135 LCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           L DH    GL     +LK +VLDEAD++L++GF+  I+ IL   P++R+ L+FSAT+   
Sbjct: 124 LIDHFETSGLQPRCQNLKVLVLDEADQLLEMGFKPSIDKILGFIPRQRQTLLFSATVPNQ 183

Query: 193 ITTLAKNYQKDA-VRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI- 248
           +  +A N  +     V+   E  +  ++ +     +  L D    +V ++  H A+N + 
Sbjct: 184 VKQIAANALRPGYAYVDCVGEEDSATNTQVTQWLTMAPLDDHLPLLVQLVNMHQAQNPVE 243

Query: 249 --VFCSTRASVSRFTKVLAEHLFQ-----VVALSGELSQQERSNALQMMRDGRARVCIAT 301
             V C      +R T++ AE LFQ     V  +    SQ  R+ A    R+ +  V +++
Sbjct: 244 HKVICFF--PTARATQLAAE-LFQALGKPVTEIHSRKSQGHRTKAADAFREAKCGVMMSS 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV+ARG+D PD+ LV+   L S+ E  +HR GRT RAG+ G  + ++  +     E  F 
Sbjct: 301 DVSARGLDYPDVTLVVQVGLPSSREQYIHRLGRTARAGKTGEGLLLLAPH-----EEFFT 355

Query: 362 EANVSVVWEPAPS 374
                +   PAP+
Sbjct: 356 RQLKDLPITPAPA 368


>gi|209882562|ref|XP_002142717.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209558323|gb|EEA08368.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 667

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 28/400 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           E L +RG   L  +Q    N    + DVL  A+TG+GKT+AF L +   L+ +    +  
Sbjct: 27  EILKKRGINRLFPIQAKSFNYIFNKNDVLGKAKTGTGKTLAFVLPVIERLIKKGKFHTNE 86

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L + PTRELA QV  E E +       V    GG   + + ++++ G  I+VG
Sbjct: 87  IGRKPLVLVLLPTRELAQQVSNEFELMKGNNRYKVVSIYGGSPEYPQIQEVKKGVDIIVG 146

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---------SSPKKRR 181
            PGR+ D I    LN+S +  ++LDEAD+ML++GF++ ++ ++D         ++ K RR
Sbjct: 147 CPGRVLDFIERNILNVSKINVLILDEADKMLEMGFKEYVDKVIDFVKKQTSEENTDKNRR 206

Query: 182 --MLMFSATISPAITTLAKN-YQKDAVRVNIAS----ENRQHSD-----IDYRAVLVALS 229
             +L+FSAT+   I  +       D V V++ +     N   SD     I + A+  A  
Sbjct: 207 FQILLFSATVPSWIKKIVNEIMSNDTVTVDVTNISVDGNEDSSDSGNTRIRHLAIQCAYP 266

Query: 230 DRDNAIVNILRYHGAKN--AIVFCSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNA 286
            R   + +I+  +   +   I+F  T+ + +  + +     + QV  L G++ Q +R  A
Sbjct: 267 QRTALLKDIITMYAGIHGKCIIFTETKQTANEISMRSTISDMCQV--LHGDIQQSQREIA 324

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           LQ  ++GR R  +ATDVAARG+ + D+ +VI      + +  +HR+GRTGRAG+ G ++ 
Sbjct: 325 LQAFKEGRYRCLVATDVAARGLHIDDVAVVIQLAPPRDIDTYIHRAGRTGRAGKFGTAIL 384

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
               N       + +  N++     AP  E I ++ A  +
Sbjct: 385 FCNMNDYPFLLNIEKIGNINFQRIGAPQFEEILQKTADSV 424


>gi|229522511|ref|ZP_04411927.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229340496|gb|EEO05502.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 416

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 34  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 86

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 87  RELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPNILVATTGRLFD-LTQSG 145

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 146 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRA 205

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 206 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 265

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 266 LNKAGIVATALHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVINFELPM 325

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G+++ ++
Sbjct: 326 HAETYVHRVGRTARAGQQGIALSLV 350


>gi|164659598|ref|XP_001730923.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
 gi|159104821|gb|EDP43709.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
          Length = 552

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/407 (32%), Positives = 203/407 (49%), Gaps = 45/407 (11%)

Query: 1   MKIFENIPQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+ +   I   L ER    G+   T +Q       L+ +D++  A+TGSGKT+AFG+
Sbjct: 117 MLSFDELNGKINPKLKERLDMEGFSKPTLIQSCCWPVLLQGRDMVGVAETGSGKTLAFGI 176

Query: 57  ALASTLLAENDRFSPASAPL-------------ALAIAPTRELAVQVGRELEWLYAKTGV 103
                ++   +++ P+S                 L IAPTRELA+Q    L  +    G 
Sbjct: 177 PALQYVM---EQWPPSSTSSIKKSKSNNKNKIHVLVIAPTRELAIQTRDNLARVAEPLGY 233

Query: 104 VVAVCIGGVSVHRERRDLQNGA---HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
            V    GGVS   + R+L + A   HI+VGTPGR+ D  R + L++ H+  + LDEAD M
Sbjct: 234 GVFCLYGGVSKGEQIRELASYALPVHIIVGTPGRVLDLAREESLDLGHVSYLTLDEADRM 293

Query: 161 LDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----N 213
           LD GF  DI  I+    ++   RR  MFSAT  PA+  LA  + +  VRV + S+    N
Sbjct: 294 LDKGFEPDIRAIIGMTKTNEDGRRTNMFSATWPPAVRGLADTFMRVPVRVTVGSDVLSAN 353

Query: 214 RQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNA----IVFCSTRASVSRFTKVLAE 266
           R+ S       +  L D   ++ A+   LR   A+      ++F   +    R    L  
Sbjct: 354 RRVSQ-----TVQVLDDGRAKERALNTFLRTIQAQKTNEKILIFALYKKEAQRVENTLRR 408

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             ++V  + G+LSQ +R  +L+  +     + +ATDVAARG+D+P++E VI+       E
Sbjct: 409 WGYRVSGIHGDLSQHDRLASLEAFKTAETPLLVATDVAARGLDIPNVEYVINYTFPLTIE 468

Query: 327 NLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE--RLFREANVSVVWE 370
           + +HR GRTGR G+ G ++ F   ++     E  R+ ++AN  V  E
Sbjct: 469 DYIHRIGRTGRGGKSGKAITFFTDEDKAHAGELIRVLKDANQPVPKE 515


>gi|114590950|ref|XP_001155683.1| PREDICTED: eukaryotic translation initiation factor 4A isoform 2
           [Pan troglodytes]
          Length = 369

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 48  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 108 ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 161

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 162 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 221

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 222 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 281

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 282 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 341

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHR 331
            ARGID+  + LVI+ +L +N EN +HR
Sbjct: 342 LARGIDVQQVSLVINYDLPTNRENYIHR 369


>gi|114590952|ref|XP_001155612.1| PREDICTED: similar to initiation factor 4AII isoform 1 [Pan
           troglodytes]
          Length = 343

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 8/328 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 22  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F    A   L +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 82  ---FKETQA---LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 135

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 136 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 196 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 256 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHR 331
            ARGID+  + LVI+ +L +N EN +HR
Sbjct: 316 LARGIDVQQVSLVINYDLPTNRENYIHR 343


>gi|268568362|ref|XP_002640231.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae]
 gi|187029335|emb|CAP31678.1| hypothetical protein CBG_12746 [Caenorhabditis briggsae AF16]
          Length = 631

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 182/365 (49%), Gaps = 22/365 (6%)

Query: 5   ENIPQVIGEALS-------------ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
           E IP  IG  L              ++G V  T++Q   +   L  +D++  A TGSGKT
Sbjct: 183 ETIPPPIGSFLEMKFPKPLLQFLQKQKGIVTPTAIQIQGIPVALCGRDMIGIASTGSGKT 242

Query: 52  VAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTG---V 103
           + F L L    + +  +  F     P  L I P+RELA Q+     E+    AK G   +
Sbjct: 243 MTFVLPLIMFCIEQEVKLPFMRNEGPFGLIIVPSRELARQIYDLIIEMSEAIAKAGFPEL 302

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              +CIGGV +  + +D + G HIVV TPGRL D +  K +N+   + +VLDEAD MLD+
Sbjct: 303 RAGLCIGGVPIGEQAKDFRQGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDM 362

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF D+I+ I      +R+ L+FSAT+   I   AK+     + VN+        ++    
Sbjct: 363 GFEDEIKSIFYFFKSQRQTLLFSATMPKKIQFFAKSALVKPIVVNVGRAGAASLNVLQEL 422

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V   ++   ++  L+    K  ++F   +  V    + L     +V ++ G   Q +R
Sbjct: 423 EFVRSENKLVRVLECLQKTSPK-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDR 481

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              ++  R     V +ATDVA++G+D   +E VI+ ++  + EN +HR GRTGR+GRKG+
Sbjct: 482 HAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGL 541

Query: 344 SVFVI 348
           +   I
Sbjct: 542 ATTFI 546


>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 211/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 250

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 251 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 307

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 308 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 367

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 368 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 423

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 424 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 483

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++  HR GRT RAGR G SV ++ ++ ++ 
Sbjct: 484 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKM 543

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 544 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 592


>gi|19115766|ref|NP_594854.1| translation initiation factor eIF4A [Schizosaccharomyces pombe
           972h-]
 gi|1708418|sp|P47943|IF4A_SCHPO RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|1321961|emb|CAA56772.1| translation initiation factor eIF-4A [Schizosaccharomyces pombe]
 gi|2222814|gb|AAB61679.1| cell cycle control protein eIF-4A [Schizosaccharomyces pombe]
 gi|6318257|emb|CAB60237.1| translation initiation factor eIF4A [Schizosaccharomyces pombe]
          Length = 392

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 187/346 (54%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L E+DVL  AQ+G+GKT  F +++    L + D  +      AL
Sbjct: 38  GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV----LQKID--TSLKQCQAL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    CIGG  V  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  ILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    ++  VLDEADEML  GF+D I  I    P   ++++ SAT+   +  +  
Sbjct: 152 IQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTT 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  +      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 212 KFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKV 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L E  F V ++ G++ Q +R   +   R G +R+ I TD+ ARGID+  + LVI
Sbjct: 272 DWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVI 331

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+S+  +  +   M R  E+ +
Sbjct: 332 NYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFY 377


>gi|300854098|ref|YP_003779082.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434213|gb|ADK13980.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 382

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 195/364 (53%), Gaps = 9/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I E L + G      +Q   +   L  KDV+  ++TGSGKT+A+ + +   +  E+
Sbjct: 11  INEEITEGLKKEGIEYAAEIQYKAIPEALLGKDVVGESETGSGKTLAYIVPIFQKIDFES 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQN- 123
                     A  +APT ELA+Q+   ++ L   + + V  A  IG V++ R+   L+N 
Sbjct: 71  KDVQ------AYILAPTHELAIQIHNVIKNLACNSDIPVRSAAIIGNVNIKRQVEILKNE 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVG+ GR+   I+ K L   ++K +V+DEAD++LD    +D++ I+ ++ K+R+++
Sbjct: 125 KPHIVVGSTGRILQLIKMKKLKSHNVKIIVVDEADKLLDKNNINDVKAIIKTTLKERQLM 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI      +A++  KD   +    +   + +I +   +    D+   +  ++    
Sbjct: 185 FFSATIDDRTLDIARDLMKDYKFIKAEQKTSMNENIKHMCFMCERRDKILILRKLVHILN 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T+ L  H  +  A+ G   ++ R  AL+  + G+  + +A+D+
Sbjct: 245 PKRAIVFVNKPDEIEILTEKLKYHKLRAQAIYGAEDKKVRKRALESFKLGKINLLVASDI 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D++ V   ++  +P+N LHRSGRT RAG++G S+ +I    Q+  ++  +  
Sbjct: 305 AARGLDIDDVDYVFSYDIPEDPDNYLHRSGRTARAGKEGTSICIITNKEQKLLKQYEKSF 364

Query: 364 NVSV 367
           N+ +
Sbjct: 365 NIKI 368


>gi|297794203|ref|XP_002864986.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310821|gb|EFH41245.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 591

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 192/356 (53%), Gaps = 26/356 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+  +T +Q   + P +  KDVL +A+TGSGKT+AF +  A  L   + RF+P 
Sbjct: 126 KSVKEMGFARMTQIQAKAIPPLMMGKDVLGAARTGSGKTLAFLIPAAELLY--HVRFTPR 183

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V +EL   +++T   V   IGG +  +E   L  G +++V
Sbjct: 184 NGTGVIVICPTRELAIQSYGVAKELLKYHSQT---VGKVIGGENRKKEAEILAKGVNLLV 240

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+    G    +LK  V+DEAD +L+  F +D++ I+   PK R+  +FSAT
Sbjct: 241 ATPGRLLDHLENTNGFVFKNLKLFVMDEADRILEQNFEEDLKKIIKLLPKTRQTSLFSAT 300

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIVNIL-RYHGA 244
            S  +  LA+      V +++  E RQ   +  ++    +V    R   ++  L R+HG 
Sbjct: 301 QSAKVEDLARVSLASPVYIDV-DEGRQKVTNEGLEQGYCVVPSGMRLLFLLTFLKRFHGK 359

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALS-----GELSQQERSNALQMMRDGRARVCI 299
           K  +VF ST  S    TK  AE LF+ + L      G + Q +R++ L   +     + +
Sbjct: 360 KKIMVFFSTCKS----TKFHAE-LFRYIKLDCLEIRGGIDQSKRTSTLFQFKKAETGILL 414

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI-PQNMQ 353
            T+VAARG+D P ++ ++  +   NP   +HR GRT R  G KG ++ V+ P  +Q
Sbjct: 415 CTNVAARGLDFPHVDWIVQYDPPDNPTEYIHRVGRTARGEGAKGKALLVLTPDELQ 470


>gi|330468862|ref|YP_004406605.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811833|gb|AEB46005.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 463

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 178/366 (48%), Gaps = 13/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+  G      +Q A L   L  +DVL   +TGSGKT AF LA+ + L A 
Sbjct: 21  GVPDALNRVLAASGVDRPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVLTRLAAS 80

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +P  A  P AL + PTRELA Q+   +  L     +      GGV+   +   L+ 
Sbjct: 81  R---TPRRAGRPRALILVPTRELATQIDSVMAPLAQALSLRTMTIFGGVAARPQIAGLRA 137

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKR 180
           G  ++V  PGRL DH+   G   +HL AV   VLDEAD M DLGF   +  +L+ +P+  
Sbjct: 138 GVDVLVACPGRLADHV---GTGAAHLDAVEITVLDEADHMADLGFLPTVRRLLEQTPRGG 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  D    ++ S     + + +  + V  SDR   +V +  
Sbjct: 195 QRLLFSATLDAGVDVLVRRFLTDPAVHSVDSGLSPVTAMAHHVLHVEPSDRFEVLVELTA 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    +VF  T+       + L       V L G L+Q  R+  LQ   DG+    +A
Sbjct: 255 APG--RTVVFTRTKRGAKTLARRLVAAGVTAVELHGNLAQGARTRNLQAFADGQVHTLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGI + D+ LV+HA+     +  LHRSGRT RAG  G  V ++          L 
Sbjct: 313 TDIAARGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGAAGTVVTLMTDGQVPEVRELT 372

Query: 361 REANVS 366
           R+A ++
Sbjct: 373 RKAGIT 378


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 13  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 65

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 66  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKLKHQQPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 344


>gi|156095474|ref|XP_001613772.1| pre-mRNA splicing factor RNA helicase PRP28 [Plasmodium vivax
           SaI-1]
 gi|148802646|gb|EDL44045.1| pre-mRNA splicing factor RNA helicase PRP28, putative [Plasmodium
           vivax]
          Length = 1006

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 36/377 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L +    LA 
Sbjct: 587 NLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPM----LAY 642

Query: 66  NDRFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  P +       P AL IAP+RELA+Q+  E     +         +GG +   +  
Sbjct: 643 VKQLPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEAQAF 702

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I++GTPGR+ D +      ++    V+LDEAD M+D+GF D + FILD  P  
Sbjct: 703 ELRKGVEIIIGTPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTT 762

Query: 180 ------------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                   R   MFSAT+ PA+  L++ Y +    ++I      
Sbjct: 763 NLKSEDDALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAG 822

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
              I+ +        +   +  IL  + A   IVF + +       K +++  F+ VAL 
Sbjct: 823 KRSIEQKLEFTTEGKKKQKLQEILEEYEAP-IIVFVNQKKVADIIAKSISKMKFRAVALH 881

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q+ R   L   ++G   + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRT
Sbjct: 882 GGKAQELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRT 941

Query: 336 GRAGRKGMSV-FVIPQN 351
           GRAG KGM++ FV  Q+
Sbjct: 942 GRAGMKGMAISFVTEQD 958


>gi|291244806|ref|XP_002742284.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 425

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 106/315 (33%), Positives = 172/315 (54%), Gaps = 9/315 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +A+   L  E  R S      AL
Sbjct: 69  GFEKPSAIQQRAIIPCCKGRDVIAQAQSGTGKTATFSIAILQQL--EITRMSSQ----AL 122

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    G     CIGG +V  + R L++G H+VVGTPGR+ D 
Sbjct: 123 ILAPTRELAQQIQKVVIALGDYMGAQCHACIGGTNVREDMRKLESGQHVVVGTPGRVHDM 182

Query: 139 I--RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           I  R    ++S +K  VLDEADEML  GF+D I  +    P   ++++ SAT+   +  +
Sbjct: 183 INRRAPLSDVSDIKIFVLDEADEMLSRGFKDQIYDVFRLLPHSVQVILLSATMPVDVLEV 242

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
            K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR 
Sbjct: 243 TKKFMRDPIRILVRKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFSNTRR 302

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +    F V +L G++ Q+ER   ++  R G +RV I TD+ ARGID+  + L
Sbjct: 303 KVDWLTEKMQGRDFTVSSLHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 362

Query: 316 VIHAELSSNPENLLH 330
           VI+ +L +N EN +H
Sbjct: 363 VINYDLPTNRENYIH 377


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 181/345 (52%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   + +A        I  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNEPSEIKLAVSKPAEKII--QAAYVCYENQKLGIIRSLFMDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 VFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQ 353


>gi|193641157|ref|XP_001946607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Acyrthosiphon pisum]
          Length = 721

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 183/363 (50%), Gaps = 28/363 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDR 68
           I E + + GY   T +Q   +    + +D++  A+TGSGKT+A+ + L   +  L + +R
Sbjct: 303 IMEIIEKVGYKEPTPIQRQAIPIGFQNRDIIGVAETGSGKTLAYLIPLIEWIQSLPKMER 362

Query: 69  FSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                  P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ G  I
Sbjct: 363 EEDVDQGPYSIILAPTRELAQQIEEETLKFGQPLGIRTVVVVGGLSREEQGFRLRLGCEI 422

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---------- 177
           V+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P          
Sbjct: 423 VIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKPDNED 482

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          K R+ +MF+AT+ PA+  LA+ Y +    V I S  +     +  
Sbjct: 483 AEDESKLLANYYTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGKPVERTEQI 542

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             +++ +D+   ++ IL        I+F + +       K L +  +    L G   Q++
Sbjct: 543 VHMMSENDKRKRLIEILSRKVDPPIIIFVNQKKGADVLAKGLEKLGYNACTLHGGKGQEQ 602

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL  ++ G   + +ATDV  RGID+ D+ +VI+ +++ + E+  HR GRTGRAG+ G
Sbjct: 603 REFALASLKGGVKDILVATDVVGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRAGKTG 662

Query: 343 MSV 345
           +++
Sbjct: 663 VAI 665


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 7/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I +A+   G+   T +Q       L  +DV+  A+TGSGKT+AF L     + A+
Sbjct: 114 SFPDYILKAIRAAGFTAPTPIQVQGWPIALSGRDVIGIAETGSGKTLAFLLPAVVHINAQ 173

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +    P   P+ L +APTREL  Q+ ++     A + +  +V  GGV   ++  +L+ G 
Sbjct: 174 H-LLRPGDGPIVLVLAPTRELVEQIRQQCVQFGASSRIKSSVAYGGVPKRQQMYELKRGV 232

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++  PGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 233 EILLACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 292

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    + +LA +  +++ V +N+ S + +   ++     ++   ++ + +  IL   G
Sbjct: 293 SATWPREVQSLAHDLCREEPVHINVGSLDLKTCHNVSQEVFVIEEHEKRSQLKKILGQIG 352

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               I +F  T+ +    TK L    +  +++ G+  Q+ER+  L   + G+  + +ATD
Sbjct: 353 QGTKILIFTDTKKTADSITKELRLDGWPALSIHGDKKQEERNWVLNEFKSGKHPIMVATD 412

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERL 359
           VA+RG+D+ D+++VI+ +  +  E+ +HR GRTGR G KG S  F+ P    + R   +L
Sbjct: 413 VASRGLDVRDVKVVINFDFPNQIEDYVHRIGRTGRGGNKGASYTFLTPDKNRVARELVKL 472

Query: 360 FREANVSV 367
            REA   +
Sbjct: 473 MREAKQQI 480


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 195/390 (50%), Gaps = 27/390 (6%)

Query: 5   ENIPQ------------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +N+PQ            ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT 
Sbjct: 187 DNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTA 246

Query: 53  AFGLALASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF + + +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  
Sbjct: 247 AFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAY 306

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG SV  +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   I
Sbjct: 307 GGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSI 366

Query: 170 EFILDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           E ++D        +R+ LMFSAT    +  LA+ +  + + + +       SD+      
Sbjct: 367 EKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVGRNFYE 426

Query: 226 VALSDRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           VA + + + +  IL            +VF   +         L+E+ +   ++ G+  Q+
Sbjct: 427 VARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQR 486

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +
Sbjct: 487 QREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNR 546

Query: 342 G--MSVFVIPQNMQRRAE--RLFREANVSV 367
           G   S F   ++   R +  R+ ++AN SV
Sbjct: 547 GRATSFFDPEEDAPLRGDLVRILKQANQSV 576


>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Ailuropoda melanoleuca]
          Length = 764

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 192 NLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 249

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 250 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA 306

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 307 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 366

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 367 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 422

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 423 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 482

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 483 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 542

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK++
Sbjct: 543 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL 591


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 192/363 (52%), Gaps = 15/363 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +    
Sbjct: 250 PHIIDE-MKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQP 307

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                  P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G 
Sbjct: 308 PILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERGV 367

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M+
Sbjct: 368 EVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMW 427

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR---- 240
           SAT    +  LA ++  D +++NI S N   + +I     +    ++   ++ +L+    
Sbjct: 428 SATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMMRLLKEIVP 487

Query: 241 -----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                 +     I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++
Sbjct: 488 TTNNAANNLNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGKS 547

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
            + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N ++
Sbjct: 548 NILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQ 607

Query: 355 RAE 357
             E
Sbjct: 608 ARE 610


>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
           98AG31]
          Length = 573

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 189/343 (55%), Gaps = 17/343 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KD++ S+ TGSGKT+ + + +   L+  + +    +  + L   PT
Sbjct: 7   TPIQRQTIPLALLGKDLVCSSMTGSGKTLGYLVPIFERLMWRDKKGGGKTRVMILT--PT 64

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELAVQV +  + L   T +  ++C+GG+++  +  +L+    IVVGTPGR+ DH+R  +
Sbjct: 65  RELAVQVYQVGKSLARYTDLTFSLCVGGMNLRTQEAELRERPEIVVGTPGRVIDHVRNTR 124

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
           G ++  L+ +V+DEAD +L+ GFRD++E I+ + P+ R+ ++FSAT+S ++  LA+   +
Sbjct: 125 GFSLDTLEILVIDEADRILEEGFRDELEEIISNCPRSRQTMLFSATVSESVADLARLSLE 184

Query: 203 DAVRVNIASENRQHSDIDY------------RAVLVALSDRDNAIVNILRYHGAKN--AI 248
             +R+ I       + +              +   VA   R+  +V + +         I
Sbjct: 185 KPIRIKIDPPKSTATGLTQEFLRVRDDQLLKKGAGVADIQREAILVTLCKASSFSKGRTI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++    R     +    +   L G L+Q++R ++LQ  +DG+    +ATD+A+RG+
Sbjct: 245 IFFRSKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMSSLQDFKDGKVSYLLATDLASRGL 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  +E VI+ E  +  +  LHR GRT RAG+KG ++ ++ ++
Sbjct: 305 DIKGVERVINYETPNQYDVYLHRIGRTARAGKKGSALTLVGES 347


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 180/352 (51%), Gaps = 6/352 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + + ENI + I EA    GY   T +Q A +   +   D++  AQTG+GKT AF L +  
Sbjct: 6   LGLHENILKAIQEA----GYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLA+     P     AL +APTREL  Q+   +        + VA+  GGV    +   
Sbjct: 62  -LLAQLHGQGPLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V+ TPGRL D +  +  N + L+ +VLDEAD MLD+GF   I+ I+ + PKKR
Sbjct: 121 LRAGTDLVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKRIVKALPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  I  L   +      V I   +     +      V    +   +V++L+
Sbjct: 181 QTLLFSATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQFVYEVPKHLKPALLVHLLK 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF   +    R  + L  +  + V L    +Q +R  AL   + G ARV +A
Sbjct: 241 DPAFNMVLVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+  +  V++ +   + E+ +HR GRTGRA   G ++ F+ P++
Sbjct: 301 TDIAARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPED 352


>gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 439

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 181/349 (51%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++ Y   T++Q   +   + E+DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     D V+V+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFAARLLNDPVKVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|229019510|ref|ZP_04176327.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
 gi|229025752|ref|ZP_04182153.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228735552|gb|EEL86146.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228741766|gb|EEL91949.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
          Length = 436

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 178/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R   +
Sbjct: 17  DAVRELRFSEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRIDAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEKALFVYKANTIIVDEADLMLDMGFIQDVDKIAGRMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++   + N+L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIELVKNMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LAE   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 IVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|195034694|ref|XP_001988957.1| GH11448 [Drosophila grimshawi]
 gi|193904957|gb|EDW03824.1| GH11448 [Drosophila grimshawi]
          Length = 424

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 188/352 (53%), Gaps = 17/352 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA--SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
              PA  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L+N
Sbjct: 104 --EPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAIQKDEETLKN 160

Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
           G  HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++
Sbjct: 161 GTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L 
Sbjct: 221 VMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLD 280

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  +    +   ++L E  F  + +   ++Q +R N  Q  +D + R+ +A
Sbjct: 281 VLEFNQVVIFVKSVQRCTALAQLLTEQNFPAIGIHRGMNQDDRLNRYQQFKDFQKRILVA 340

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           T++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392


>gi|190405946|gb|EDV09213.1| dead box protein [Saccharomyces cerevisiae RM11-1a]
          Length = 431

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/365 (32%), Positives = 196/365 (53%), Gaps = 33/365 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +  T  +E+    
Sbjct: 13  LTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML-TKWSED---- 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++  DLQ   H ++ 
Sbjct: 68  -PSGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIA 126

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           TPGRL  HI   G +    +   K +VLDEAD +L   F D +   + + P K  R+ L+
Sbjct: 127 TPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLL 186

Query: 185 FSATISPAITTLAKN-----------YQKDAV-RVNIASENRQHSDIDYRAVLVALSDRD 232
           F+ATI+  + +L              YQ ++V  V I S  +    I+Y  +LV    ++
Sbjct: 187 FTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLK----IEY--ILVPEHVKE 240

Query: 233 NAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +L    +  K AI+F +   +     + L +   +V +L  ++ QQER+N+L   
Sbjct: 241 AYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRF 300

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R   AR  IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G ++ FV  
Sbjct: 301 RANAARTLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQ 360

Query: 350 QNMQR 354
           +++ R
Sbjct: 361 RDVSR 365


>gi|195118098|ref|XP_002003577.1| GI21901 [Drosophila mojavensis]
 gi|195388486|ref|XP_002052911.1| GJ17817 [Drosophila virilis]
 gi|193914152|gb|EDW13019.1| GI21901 [Drosophila mojavensis]
 gi|194149368|gb|EDW65066.1| GJ17817 [Drosophila virilis]
          Length = 424

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 186/350 (53%), Gaps = 13/350 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP--- 105

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             S  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L+NG 
Sbjct: 106 --SDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAIQKDEETLKNGT 162

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 223 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVL 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   ++Q ER N  Q  +D + R+ +AT+
Sbjct: 283 EFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMNQDERLNRYQQFKDFQKRILVATN 342

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 343 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 194/372 (52%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           TDVA+R  G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++
Sbjct: 398 TDVASRGLGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSD 457

Query: 358 --RLFREANVSV 367
              + REAN ++
Sbjct: 458 LISVLREANQAI 469


>gi|113971087|ref|YP_734880.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885771|gb|ABI39823.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 461

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 190/358 (53%), Gaps = 25/358 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT +F L +   L  +     
Sbjct: 12  ILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLEQLSKQ----- 66

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  PL  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 67  PSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      + + ++FSAT
Sbjct: 127 VATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQTMLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  L+         VN+A EN   S ++     V    +   +  ++  +  +  +
Sbjct: 187 YSDAVKQLSHKMLNQPEWVNVA-ENATASTVEQLVYRVDKRRKAELLSELVGRNNWRQVL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF S        TK  AEHL Q + L         G+ +Q  R+  L   + G+ RV +A
Sbjct: 246 VFAS--------TKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355


>gi|330844673|ref|XP_003294242.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
 gi|325075337|gb|EGC29238.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
          Length = 599

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 199/361 (55%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P      +++ E  +  +T +Q   + P L  KD+L +A+TGSGKT+AF +     
Sbjct: 121 FANLPIHDNTKKSIEEMTFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEI 180

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+     F P +    + I+PTRELA+Q   V +EL   + +T     + IGG +   E 
Sbjct: 181 LVKSG--FKPRNGTGVIIISPTRELALQIYGVAKELLKYHTQTH---GIIIGGAAKKPEE 235

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L+ G +++V TPGRL DH++  KG    +LK +V+DEAD +L++GF +++  I+   P
Sbjct: 236 ERLEKGVNLLVATPGRLLDHLQNTKGFITKNLKCLVIDEADRILEVGFEEEMHKIVKLLP 295

Query: 178 KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNA 234
           K R+ ++FSAT +  +  +AK +     V V +  E R+ S ++   +  +V  S+R   
Sbjct: 296 KNRQTMLFSATQTRKVEDIAKVSLNNSPVYVGVDDE-REISTVEGLEQGYVVCPSERRFL 354

Query: 235 IV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++   L+ +  K  IVF S+  +V    ++L      V+ L G   QQ+R+N      + 
Sbjct: 355 LLYTFLKRNLNKKVIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNA 414

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQN 351
              + I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG + +F++P+ 
Sbjct: 415 EKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKE 474

Query: 352 M 352
           +
Sbjct: 475 L 475


>gi|71001454|ref|XP_755408.1| RNA helicase (Dbp) [Aspergillus fumigatus Af293]
 gi|66853046|gb|EAL93370.1| RNA helicase (Dbp), putative [Aspergillus fumigatus Af293]
 gi|159129480|gb|EDP54594.1| RNA helicase (Dbp), putative [Aspergillus fumigatus A1163]
          Length = 565

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 186/376 (49%), Gaps = 25/376 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 128 FPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 186

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 187 PLLAPGDGPIVLILAPTRELAVQIQAEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLSRGV 245

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 246 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 305

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++  +  
Sbjct: 306 SATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           + +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G++ + +AT
Sbjct: 366 NRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVAT 425

Query: 302 DVAARGI------------------DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           DVA+RGI                  D+ D+  V++ +  +N E+ +HR GRTGRAG KG 
Sbjct: 426 DVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGT 485

Query: 344 SVFVIPQNMQRRAERL 359
           ++        ++A  L
Sbjct: 486 AITFFTTENSKQARDL 501


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 187/382 (48%), Gaps = 43/382 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P  I E + E GY   + +Q   +   L  +D++  A+TGSGKT +F + + + +    
Sbjct: 405 LPLQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPMLTYIGKLP 464

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L +++R      P AL +APTRELA Q+  E      + G      +GG ++  +  ++
Sbjct: 465 PLTDDNRHL---GPYALILAPTRELAQQIEVETNKFALRLGYRCVSIVGGKAMEEQALNM 521

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           ++GA I++ TPGRL D I    L +     VV+DEAD M++LGF + + FILD  P    
Sbjct: 522 RDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQLPLSNL 581

Query: 180 --------------------------------RRMLMFSATISPAITTLAKNYQKDAVRV 207
                                           R+ +MFSAT+ PA+  LAK Y +    V
Sbjct: 582 KPDTEEAEDSSKMTSFVGGVEGFDLTGAKGLYRQTVMFSATMPPAVERLAKKYLRRPAVV 641

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
            I    +    +D +   +   D+    ++ +L        IVF + + +  +  K ++ 
Sbjct: 642 TIGVAGQAVDTVDQQVEFLPNEDKKRGRLLEVLNQGHTPPIIVFVNQKKTADQLAKDISR 701

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             +    L    +Q++R  AL  +R G + + +ATD+A RGID+PD+ LV++ +++   E
Sbjct: 702 AGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPDVGLVVNFQMAGTIE 761

Query: 327 NLLHRSGRTGRAGRKGMSVFVI 348
             +HR GRTGRAG+ G ++  +
Sbjct: 762 AYVHRIGRTGRAGKVGTAITFL 783


>gi|300717997|ref|YP_003742800.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299063833|emb|CAX60953.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 443

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 181/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+GY   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S  
Sbjct: 17  KALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T 
Sbjct: 75  GPPRVLILTPTRELAMQVADQARELAKYTHLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   +++++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVESLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   ++    +   +      R+   I    YRA  V    +   ++++L+      ++
Sbjct: 195 AIKDFSERLLNEPEEIEADPARRERKKILQWYYRADDV--KHKTALLIHMLKQPEVTRSV 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V      L E       L GEL Q +R+ A++ + DGR  V +ATDVAARGI
Sbjct: 253 VFVRKRERVHELCGWLREAGINTSYLEGELEQFKRNEAIKRVVDGRVNVLVATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + ++    +  LHR GRTGRAG+KG+++ ++
Sbjct: 313 DIEDVSHVFNFDMPRTSDTYLHRIGRTGRAGKKGIAISLV 352


>gi|222617918|gb|EEE54050.1| hypothetical protein OsJ_00740 [Oryza sativa Japonica Group]
          Length = 468

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 29/340 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +   
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNAQ 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                            + G  
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEA--------------------------TKFGVE 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 191 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+L      
Sbjct: 251 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 310

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 311 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 371 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 410


>gi|73992237|ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 1 [Canis familiaris]
          Length = 765

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 248

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  +P+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 249 ---YKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA 305

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 306 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 365

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   V +      DR+  +
Sbjct: 366 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFVRIRPNREGDREAIV 421

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 422 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 481

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 482 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 541

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK++
Sbjct: 542 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL 590


>gi|218187683|gb|EEC70110.1| hypothetical protein OsI_00766 [Oryza sativa Indica Group]
          Length = 470

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 29/340 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +   
Sbjct: 100 FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNAQ 158

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                            + G  
Sbjct: 159 PILAPGDGPIVLVLAPTRELAVQIQQEA--------------------------TKFGVE 192

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 193 IVIATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 252

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+L      
Sbjct: 253 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 312

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 313 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 372

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 373 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 412


>gi|147902341|ref|NP_001084744.1| hypothetical protein LOC414715 [Xenopus laevis]
 gi|46329511|gb|AAH68907.1| MGC83105 protein [Xenopus laevis]
          Length = 638

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 199/347 (57%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 158 KAITEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAF--LIPAIELIYKLKFMPR 215

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L A       + +GG +   E + L NG +IVV TP
Sbjct: 216 NGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANGVNIVVATP 275

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +L++GF  +++ I++  PK+R+ ++FSAT + 
Sbjct: 276 GRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTMLFSATQTR 335

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 336 KVEDLARISMKKEPLYVGV-DDHKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKM 394

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 395 MVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARG 454

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 455 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGRGHALLILRPEEL 501


>gi|328469481|gb|EGF40427.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 412

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 177/329 (53%), Gaps = 16/329 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L        ++ S      AL + PT
Sbjct: 24  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLL-------EKLSVNPEQKALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVV---AVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA+QV   +     + G V+   AVC+ GGV   ++++ L    HI+V T GRL D +
Sbjct: 77  RELAMQVSEAIN----QVGQVLELNAVCLCGGVDKEQQQQALATNPHILVATTGRLVD-L 131

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
              GL++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK 
Sbjct: 132 ANNGLDLSNVHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFSDELKGKAKL 191

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             +   +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +   
Sbjct: 192 LMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADG 251

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L +      AL G  SQ ER +AL   + G+ +V IATD+ ARGI +  L +VI+ 
Sbjct: 252 LAKKLNKAGISANALHGNKSQDEREDALAQFKSGQMQVLIATDLLARGIHIEQLPVVINF 311

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           EL  + E  +HR GRT RAG +G+++ ++
Sbjct: 312 ELPMHAETYVHRVGRTARAGEQGVAMSLV 340


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score =  173 bits (439), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 16  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 68

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 69  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQLNKLKHQQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 129 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 189 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 249 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 309 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 347


>gi|221054171|ref|XP_002261833.1| DEAD/DEAH box helicase [Plasmodium knowlesi strain H]
 gi|193808293|emb|CAQ38996.1| DEAD/DEAH box helicase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 194/363 (53%), Gaps = 20/363 (5%)

Query: 1   MKIFENIPQVIGEAL----SERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFG 55
           +   E++  + G  L     E+GY  +T VQ+  + P ++ K +++ S+QTGSGKT +F 
Sbjct: 513 LSTMEDLCTICGNNLYRNICEKGYSQMTIVQKYSI-PIIKNKMNLIASSQTGSGKTFSFL 571

Query: 56  LALASTLLAENDRFSP-------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
             + + L+ +ND   P          PL L + PTREL +Q+  E+  L     +V    
Sbjct: 572 CPVITNLIEDNDTLRPHFPGAYACVFPLGLVLCPTRELVLQILNEVNSLTKNMELVCMAF 631

Query: 109 IGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            GG ++  +   + +  A I+V TPGRL D +    +++S +K ++ DEADEM+ LG ++
Sbjct: 632 YGGETMKDQIVQINERQADIIVSTPGRLLDLMNSCKVSLSFVKYLIFDEADEMISLGLKE 691

Query: 168 DIEFILDS----SPKKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYR 222
            ++ IL      + + R+ ++F+AT S ++   + K      V +NI  +    + I   
Sbjct: 692 QMDAILFEKDLCASEARQTILFTATFSDSLREDIEKFMGTPYVFLNITQKREVQNSIKQV 751

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              V    + + ++  L+    + AI+F   R+S++     L  + +QV  L G++SQ  
Sbjct: 752 VKYVPAKCKQDELLKDLKPLQGQ-AIIFVELRSSINYIFSALKSNGYQVNYLHGKMSQVR 810

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R +  Q  RD   ++ +AT +AARG+D PDLELVI+ +L +  E  +HR GRTGR G+ G
Sbjct: 811 RQDVFQQFRDREFQILVATSIAARGLDFPDLELVINYDLPAEFEQYMHRIGRTGRIGKTG 870

Query: 343 MSV 345
           +++
Sbjct: 871 LAI 873


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 189/358 (52%), Gaps = 5/358 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +          +A+
Sbjct: 528 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLEDGDGAIAI 586

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TPGR+ D 
Sbjct: 587 IMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDM 646

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT    +  
Sbjct: 647 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEA 706

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTR 254
           LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + IVF   +
Sbjct: 707 LARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQ 766

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+D+ DL 
Sbjct: 767 ENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLI 826

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S    P+
Sbjct: 827 LVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSGTLIPS 884


>gi|194763447|ref|XP_001963844.1| GF21236 [Drosophila ananassae]
 gi|190618769|gb|EDV34293.1| GF21236 [Drosophila ananassae]
          Length = 1211

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 189/358 (52%), Gaps = 5/358 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +          +A+
Sbjct: 523 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLEDGDGAIAI 581

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V TPGR+ D 
Sbjct: 582 IMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCTPGRMIDM 641

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT    +  
Sbjct: 642 LAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEA 701

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTR 254
           LA+   K  + V +   +    D++   V++    +   ++ +L  Y  A + IVF   +
Sbjct: 702 LARRILKKPIEVIVGGRSVVCKDVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQ 761

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+D+ DL 
Sbjct: 762 ENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLI 821

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S    PA
Sbjct: 822 LVVNYDVPNHYEDYVHRCGRTGRAGKKGQAFTFITPEQSRYAGDIIRALDLSGTLIPA 879


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 110/348 (31%), Positives = 188/348 (54%), Gaps = 14/348 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  Y   T +Q   +   +  ++++  A+TGSGKT+AF L +   ++ + D     
Sbjct: 437 DVLKKLKYEKPTPIQAQAIPAIMSGRNLIGIAKTGSGKTLAFLLPMFRHIM-DQDPLEAD 495

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             PLA+ ++PTRELA+Q+ +E +  + +   V  VC+ GG  +  +  +L+ GA I+V T
Sbjct: 496 DGPLAVIMSPTRELAMQIYKECK-RFCRALNVRGVCVYGGTGISEQIAELKRGAEIIVCT 554

Query: 132 PGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D +    G+  N+     VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 555 PGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVDNIRPDRQTVMFSAT 614

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
               +  LA+      + V +   +   SD++ +   VA+ D D   + +L     Y   
Sbjct: 615 FPRQMEALARRILNKPLEVQVGGRSVVCSDVEQK---VAIVDDDQKFLTLLELLGVYQEQ 671

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF   +    +  K L +  +  ++L G + Q +R +A+Q  + G  ++ IAT VA
Sbjct: 672 GSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAGNIKLLIATSVA 731

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           ARG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +  F+ P+ 
Sbjct: 732 ARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNKGNAFTFITPEQ 779


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 168/327 (51%), Gaps = 41/327 (12%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 57  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 110

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 111 ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 170

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 171 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 230

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +  D +R+ +      H   D                                    V 
Sbjct: 231 KFMTDPIRILVKRFYYIHPLFD-----------------------------------PVD 255

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I+
Sbjct: 256 WLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 315

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSV 345
            +L +N E  +HR GR+GR GRKG+++
Sbjct: 316 YDLPNNRELYIHRIGRSGRYGRKGVAI 342


>gi|114048321|ref|YP_738871.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889763|gb|ABI43814.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 461

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 190/358 (53%), Gaps = 25/358 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT +F L +   L  +     
Sbjct: 12  ILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLEQLSKQ----- 66

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P+  PL  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 67  PSDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      + + ++FSAT
Sbjct: 127 VATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQTMLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  L+         VN+A EN   S ++     V    +   +  ++  +  +  +
Sbjct: 187 YSDAVKQLSHKMLNQPEWVNVA-ENATASTVEQLVYRVDKRRKAELLSELVGRNNWRQVL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF S        TK  AEHL Q + L         G+ +Q  R+  L   + G+ RV +A
Sbjct: 246 VFAS--------TKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355


>gi|311895413|dbj|BAJ27821.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 594

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/378 (31%), Positives = 184/378 (48%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGL L   L+   
Sbjct: 93  LPAGLMRELGAQGVTEPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPL---LVRTA 149

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A  PLAL + PTRELA QV   L        + +   +GG+S+ R+   ++ G  
Sbjct: 150 GKRATARRPLALVLVPTRELAQQVTEALAPYAGVLNLRITTVVGGMSITRQSNQVRRGTE 209

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I+   + +  +   VLDEAD+M D+GF   +  +L+      + ++FS
Sbjct: 210 VLVATPGRLDDLIQRGDVFLEDVAITVLDEADQMADMGFLPQVVKLLEQVADGGQRMLFS 269

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   +  D V  ++       + +D+  + +  +D+      I    G   
Sbjct: 270 ATLDRNVDRLVNRFLTDPVTHSVDPSAGAVTTMDHHLLQLEPADKAETTARIAARDG--R 327

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  K L  H     AL G  SQ +R+  L   R+G     IAT+VAAR
Sbjct: 328 VIMFVHTKHGADRLAKQLRAHGVVAAALHGGKSQPQRNRVLDQFREGEVTALIATNVAAR 387

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R   RL   A + 
Sbjct: 388 GIHIDGLDLVVNVDPPIDHKDYLHRGGRTARAGESGTVVTLVLPEQRREVNRLMSIAGIR 447

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P+V  +R  D +
Sbjct: 448 ------PTVTKVRPEDGE 459


>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
          Length = 703

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 161 NLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 218

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 219 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRA 275

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 276 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 335

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 336 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 391

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 392 AALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 451

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 452 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 511

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK++
Sbjct: 512 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL 560


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 189/343 (55%), Gaps = 9/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSP 71
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+  +  R   
Sbjct: 26  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLKGGRVEI 85

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            S    L + PTRELA Q  ++++     T V   +  GG     +   L+    +++GT
Sbjct: 86  RS----LILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPDVLIGT 141

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
           PGRL + +    L++SH+K ++LDEAD MLD+GF +D+E +      + + L+FSAT   
Sbjct: 142 PGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248
            A+  +     KD   + + S + Q ++   + ++ A  D+    +   +L       AI
Sbjct: 202 AALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAI 260

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+
Sbjct: 261 IFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGL 320

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 321 DIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN 363


>gi|91223036|ref|ZP_01258302.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91191849|gb|EAS78112.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 412

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/329 (35%), Positives = 175/329 (53%), Gaps = 16/329 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L    ++        AL + PT
Sbjct: 24  TYIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQK-------ALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVV---AVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA+QV   +     + G V+   AVC+ GGV   ++++ L    HI+V T GRL D +
Sbjct: 77  RELAMQVSEAIN----QVGQVLELNAVCLCGGVDKEQQQQALATNPHILVATTGRLVD-L 131

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
              GL++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK 
Sbjct: 132 ANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFSDELKGKAKL 191

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
                 +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +   
Sbjct: 192 LMPAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADG 251

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L +      AL G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ 
Sbjct: 252 LAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINF 311

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           EL  + E  +HR GRT RAG +G++V ++
Sbjct: 312 ELPMHAETYVHRVGRTARAGEQGVAVSLV 340


>gi|56201870|dbj|BAD73320.1| putative ethylene-responsive RNA helicase [Oryza sativa Japonica
           Group]
          Length = 521

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 29/340 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L  A   +   
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAY-LLPAIVHVNAQ 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                            + G  
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEAT--------------------------KFGVE 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 191 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+L      
Sbjct: 251 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 310

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 311 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 371 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 410


>gi|302781030|ref|XP_002972289.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
 gi|300159756|gb|EFJ26375.1| hypothetical protein SELMODRAFT_97519 [Selaginella moellendorffii]
          Length = 524

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/390 (32%), Positives = 199/390 (51%), Gaps = 57/390 (14%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF--- 69
           ALS  G+   T +Q+A +     + KDV+ +A+TGSGKT+AFG+ +   LL E D+    
Sbjct: 13  ALSTLGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQRLLDERDKLLRQ 72

Query: 70  --SPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               + +PL AL + PTRELA+Q+   +  +   T + VA  +GG+S  ++ R L+    
Sbjct: 73  NNVASDSPLRALIVTPTRELALQICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRPA 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILD--------- 174
           IVVGTPGRL + +     ++  L+ +   +LDEAD M++ G   ++E I+D         
Sbjct: 133 IVVGTPGRLWELMSSGESHLVQLQEISFFILDEADRMIEKGHFQELESIIDLLPKHGEPR 192

Query: 175 -----------SSPKKRRMLMFSATIS--PAITT-LAKNY-------------------- 200
                      S+ K+R+ L+FSAT++  P     L K+Y                    
Sbjct: 193 EDLDPADNVFLSAKKRRQTLVFSATLTLPPDFKKKLKKSYGARKKSEQHSLSLLSERAGL 252

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
              A  V++ S+N     +    +     ++D  +  +L+ HG    IVFC++ A++ R 
Sbjct: 253 SDTAEVVDLTSKNVVAEKLTESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRRL 312

Query: 261 TKVLAEHLFQVVA--LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             +L   L +V A  L  +L Q++R   +   R     V +ATDVAARG+D+P +  VIH
Sbjct: 313 AAIL--RLLEVPAWPLHAQLQQRQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVIH 370

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L  + E  +HRSGRT RA + G S+ +I
Sbjct: 371 YQLPHSAEMYVHRSGRTARADKDGCSIALI 400


>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
 gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
          Length = 722

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 203/409 (49%), Gaps = 35/409 (8%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P++   I + L+ +G   +T +Q     P    +D++  ++TGSGKT+AF L L  
Sbjct: 128 FADVPEINPNIAKFLASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 187

Query: 61  TL-----------LAENDRFSPASA--------------PLALAIAPTRELAVQVGRELE 95
            L           +  +      SA              P  L + PTREL+ QV    +
Sbjct: 188 KLYKVKMGRSGEGVTSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFK 247

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            +       +    GG S   +   L+ G  I+ GTPGR+ DH+  K L++ ++K +VLD
Sbjct: 248 EISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLD 307

Query: 156 EADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-SEN 213
           EADEML+LGF  D+E IL   + K+ ++L++SAT    +  ++  Y K+   +++  S N
Sbjct: 308 EADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVVDSSN 367

Query: 214 RQHSDIDYRAVLVALSDRDNAI----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
           +   +I + A+      ++ A+    + +++ +G +  I+F  T+          +    
Sbjct: 368 KTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQ-VIIFTRTKLEADILCSEGSFKSL 426

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
               L G ++Q  R + +Q  R G  ++ IATD+AARG+D+ +++LVI     +  E  +
Sbjct: 427 SFAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYI 486

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           HR+GRTGRA +KG+SV +     ++   ++ +   +    E  P+ E +
Sbjct: 487 HRAGRTGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDV 535


>gi|62857681|ref|NP_001016776.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
 gi|89270404|emb|CAJ82546.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 198/346 (57%), Gaps = 10/346 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF   + +  L    +F P +
Sbjct: 161 AVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAF--LIPAIELVYKLKFMPRN 218

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q    L+ L A       + +GG +   E + L NG +IVV TPG
Sbjct: 219 GTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANGVNIVVATPG 278

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++   G    +L+ +V+DEAD +L++GF  +++ I++  PK+R+ ++FSAT +  
Sbjct: 279 RLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTMLFSATQTRK 338

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNAI 248
           +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  +
Sbjct: 339 VEDLARISLKKEPLYVGV-DDHKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKMM 397

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 398 VFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 457

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 458 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGRGHALLILRPEEL 503


>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           L20]
 gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 445

 Score =  173 bits (438), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   TSVQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|321258735|ref|XP_003194088.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
 gi|317460559|gb|ADV22301.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus gattii WM276]
          Length = 586

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/345 (34%), Positives = 179/345 (51%), Gaps = 27/345 (7%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLA-------LASTLLAENDRFSPASAPLALAIAPTRELA 87
           LR+KDV+  A+TGSGKT+AFG+        L     ++  R         L +APTRELA
Sbjct: 189 LRKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 248

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNI 146
            Q    L     + G+      GGV    + ++L Q  A +VVGTPGR  D      L++
Sbjct: 249 QQSHEHLLAFGEQVGLKSVCIFGGVGKDGQAKELSQREARVVVGTPGRTLDLADSGELDL 308

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQKD 203
           S +  +VLDEAD MLD GF +DI  I+  +P   + R+ +MFSAT   ++  LA  +  D
Sbjct: 309 SSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLND 368

Query: 204 AVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILRYH---------GAKNAIVF 250
            +R+ + S+    N++   +    VL    D+D  + + LR H              +VF
Sbjct: 369 PLRITVGSDELSANKRIEQV--VEVLDNPRDKDFRLTHHLRAHLKAHPNSKASPTRILVF 426

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +    R    +    + V AL G+++Q+ R  AL+  + G+  V +ATDVAARG+D+
Sbjct: 427 ALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDI 486

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           PD+ LVI+       E+ +HR GRTGRAG+ G +V F   +N ++
Sbjct: 487 PDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEK 531


>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
 gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
          Length = 447

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 183/346 (52%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  PQ++ +AL+++G    T++Q   +   +   DVL S+ TG+GKT+AF L     LL
Sbjct: 9   FDLDPQLL-KALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPAIQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + + L   T + +A   GGV+          
Sbjct: 68  -DFPRRKPG-APRVLVLTPTRELAMQVAEQAQQLAQFTSLSIATITGGVAYQNHGEIFNK 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +V+ TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ +
Sbjct: 126 NQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAERIAAETRWRKQTM 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    + + A+    + V VN     R+   I    Y A   +   +   +  ++
Sbjct: 186 LFSATLEGEELNSFAQRLLDNPVEVNAEPSRRERKKIQQWYYHAD--SKEHKIKLLARVI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V    ++L +   +   L GE++Q +R+NA++ +RDG   + +
Sbjct: 244 VDEKVSKGIVFVRHREEVRELAEILRKRGIRSTYLEGEMAQTQRNNAIEKLRDGVVTILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AT+VAARGID+ D+  V + +L  N +  LHR GRT RAG+KG ++
Sbjct: 304 ATNVAARGIDIDDISHVFNFDLPYNADVYLHRIGRTARAGKKGCAI 349


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 13  INEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 65

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 66  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 344


>gi|325924306|ref|ZP_08185850.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545171|gb|EGD16481.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 523

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 10/306 (3%)

Query: 47  GSGKTVAFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           G+GKT+AF + + + LL   A  DR  P   P AL +APTRELA+Q+ ++     A  G+
Sbjct: 1   GTGKTLAFLVTVVNRLLNRPALADR-KPED-PRALILAPTRELAIQIHKDAVKFGADLGL 58

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLD 162
             A+  GGV   ++R  LQ G  +++ TPGRL D+++  K +++   +  VLDEAD M D
Sbjct: 59  RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD 118

Query: 163 LGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LGF  DI F+L   P++  R+ L+FSAT+S  +  LA  +  +  ++ + +E    + + 
Sbjct: 119 LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVR 178

Query: 221 YRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            R    +  ++   ++ +L R  GA+  +VF +T+A V R  + L  H ++V  LSG++ 
Sbjct: 179 QRIYFPSDEEKQTLLLGLLSRSEGART-MVFVNTKAFVERVARTLERHGYRVGVLSGDVP 237

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R + L   + G+  + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G
Sbjct: 238 QKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG 297

Query: 340 RKGMSV 345
            +G ++
Sbjct: 298 EEGDAI 303


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 133/380 (35%), Positives = 201/380 (52%), Gaps = 32/380 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I E +   GY   T VQ+  +   +  +D++  AQTGSGKT AF + L + +L A  D  
Sbjct: 353 IEENIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINNVLQAGPDAL 412

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-R 119
             ++          P AL ++PTREL++Q+  E      +T +  A+  GG   +RE+  
Sbjct: 413 YKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGGRENYREQIN 472

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--- 176
            L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I  I+D S   
Sbjct: 473 KLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQIRQIVDLSKMP 532

Query: 177 PKKRRML-MFSATISPAITTLAK-----NYQKDAV-RVNIASENRQHSDIDYRAVLVALS 229
           PK +R+  MFSAT    I  LA+     NY   AV RV   SEN     I  + V V   
Sbjct: 533 PKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSEN-----IMQKIVWVEEH 587

Query: 230 DRDNAIVNILRYHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           ++ + ++++L   G  +A+  VF  T+   S     L +  + VVA+ G+L Q +R   L
Sbjct: 588 EKKSFLMDLLD-AGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHL 646

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++   
Sbjct: 647 ETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSF 706

Query: 348 I---PQNMQRRAERLFREAN 364
                +N+ R    L  EAN
Sbjct: 707 FNDKNRNIARDLAELVVEAN 726


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 188/347 (54%), Gaps = 10/347 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ E + + G+V  + +Q       L+ +D++  AQTG+GKT+AF L     + 
Sbjct: 297 FHVWPELL-EEIRKAGFVKPSPIQAQAWPVLLKGEDMIGIAQTGTGKTLAFLLPAFIHID 355

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L +APTRELA+Q+ +E++  Y   G+      GG    ++ + +  
Sbjct: 356 GQPVPRGQRGGPNVLVMAPTRELALQIEKEVQ-KYQFKGIKAICLYGGGDRRQQIKKVGE 414

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D +    ++I+ +  +VLDEAD MLD+GF   I + +LD  P  R+ 
Sbjct: 415 GVEIIICTPGRLNDLVSANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPD-RQT 473

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
           +M SAT  P +  LA++Y K+ V+V + + +   +    + + V   D ++  V ++ + 
Sbjct: 474 IMTSATWPPGVRRLAQSYMKNPVQVYVGTLDLAATHTVTQQIEVI--DEEDKYVRVMGFV 531

Query: 242 -HGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +  KN  AI+FC  +      +           ++ G+  Q +R  AL+ ++ G  RV 
Sbjct: 532 KNMGKNDKAIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRVL 591

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IATDVA+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G+S+
Sbjct: 592 IATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGISL 638


>gi|297579966|ref|ZP_06941893.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|297535612|gb|EFH74446.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 437

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V T GRL D +   GL+++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPTILVATTGRLFD-LTQSGLSLNRVTTLVLDEADRLLDMGFWPQVQALAIQTASVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDELKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 362


>gi|310794753|gb|EFQ30214.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 577

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 219/457 (47%), Gaps = 45/457 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAE 65
           P +I     +  + ++  VQ A L   L  K  D LV A+TG+GKT+AF L    TL+  
Sbjct: 69  PALIQAITQDLKFDHMMPVQAATLTELLPPKRGDCLVQAKTGTGKTIAFLLPAIQTLIT- 127

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124
           N+R   A   L L I+PTRELA+Q+ +E + L  +     V + IGG +  RE + + NG
Sbjct: 128 NNRGRGAGISL-LVISPTRELAMQIAKEAQALLQRLQQYRVCIAIGGTNKDREEKQILNG 186

Query: 125 AHIVVGTPGRLCDHIRGKGLNIS--HLKAVVLDEADEMLDLGF----RDDIEFILDSSPK 178
             I++ TPGRL DH+  + +  S  HL  +VLDEAD +LD+GF    +D +  + D +  
Sbjct: 187 CDILIATPGRLIDHLSNEYIKESFRHLDTLVLDEADRLLDMGFMPALKDIVRALPDKAQT 246

Query: 179 KRRMLMFSATISPAIT-----TLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRD 232
            R+ ++FSATI+P +       L+K Y+   +    A E   H  +    + V   +   
Sbjct: 247 NRQGMLFSATIAPHVEQVAGLVLSKGYK--FISTIPAGEANTHERVPQHLIKVPTFAAVA 304

Query: 233 NAIVNILRYHGAK------NAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERS 284
            A+V  +R   A        AI+F  T A    +  VLA    +     L   +SQ +R+
Sbjct: 305 PAMVGAIREEAAHVGPETFKAIIFAPTAALADFYGDVLANVPGMPPTAVLHSRISQSKRT 364

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
                 RD ++ + +ATDV ARG+D P +  V    + ++ E+ +HR GRT RAG +G  
Sbjct: 365 KTTNDYRDSKSGIIVATDVIARGMDFPGVTSVFQVGIPADKESYIHRLGRTARAGAEGRG 424

Query: 345 VFVI-------PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI--LQDPLFLDS 395
           +F++       PQ   +      R A++S       S E + E   QRI   Q      +
Sbjct: 425 IFIVAEIEGFFPQWTLKEISFETRRADLS-------SAEQVYEIAEQRIDEAQKAKIYQA 477

Query: 396 IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
             G  K  +  L  K D E++ A      R  L APE
Sbjct: 478 WLGYYKNWMKSL--KWDKEQLVAEGNIFARDALAAPE 512


>gi|255033889|ref|YP_003084510.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946645|gb|ACT91345.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 481

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 193/355 (54%), Gaps = 12/355 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+    Y   T +QE  +   L  KD+L  AQTG+GKT A+ + +   +  E +  + A 
Sbjct: 15  AVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPILDKVAHEANEHTGA- 73

Query: 74  APLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVVG 130
               L + PTRELAVQ+ ++++ L Y      +AV  G  G    ++++ L  GA I++ 
Sbjct: 74  ----LILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKKALTQGADIIIA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL  H++   ++   L+ +VLDEAD MLD+GF  DI  I+   P +R+ LMFSAT+ 
Sbjct: 130 TPGRLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNERQTLMFSATMP 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I  LAK   K+   + +A  +R    ID +  L     +   ++++L+     + ++F
Sbjct: 190 PKIGDLAKRILKEPEEIRLAV-SRPADRIDQQFYLAKDEQKLPLLMHLLKGVENISMVLF 248

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S +++V    + L +       +S +  Q ER   L+  ++ +  + +ATDV +RGID+
Sbjct: 249 TSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFPILVATDVLSRGIDI 308

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFRE 362
            +L  V++ ++  +PE+ +HR GRT RA  KG ++  I +  Q+   + ERLF +
Sbjct: 309 DNLSHVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYVLKIERLFEK 363


>gi|323304640|gb|EGA58403.1| Dbp8p [Saccharomyces cerevisiae FostersB]
          Length = 412

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 193/352 (54%), Gaps = 33/352 (9%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q+A +   L  +D +  A+TGSGKT+AF   +  T  +E+      S    + + PT
Sbjct: 7   TAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPML-TKWSED-----PSGMFGVVLTPT 60

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +   L +   + V+V +GG S+ ++  DLQ   H ++ TPGRL  HI   G
Sbjct: 61  RELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMSSG 120

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLA 197
            +    +   K +VLDEAD +L   F D +   + + P K  R+ L+F+ATI+  + +L 
Sbjct: 121 DDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDKRQTLLFTATITDQVKSLQ 180

Query: 198 KN-----------YQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHG 243
                        YQ ++V  V I S  +    I+Y  +LV    ++  +  +L    + 
Sbjct: 181 NAPVQKGKPPLFAYQVESVDNVAIPSTLK----IEY--ILVPEHVKEAYLYQLLTCEEYE 234

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AI+F +   +     + L +   +V +L  ++ QQER+N+L   R   AR+ IATDV
Sbjct: 235 NKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFRANAARILIATDV 294

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           A+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G ++ FV  +++ R
Sbjct: 295 ASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQRDVSR 346


>gi|322834951|ref|YP_004214978.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321170152|gb|ADW75851.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 430

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 179/341 (52%), Gaps = 13/341 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL ++G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+      PA
Sbjct: 22  EALEKKGFHYCTPIQALALPITLAGRDVAGQAQTGTGKTLAFLASTFHYLLSH-----PA 76

Query: 73  S------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G  
Sbjct: 77  AEGRQTNQPRALIMAPTRELAVQIHSDAEALSESTGLKLGLAYGGDGYDKQLKVLESGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  ++
Sbjct: 137 ILIGTTGRLIDYTKQNHIDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  + I  E +    I       +  ++   +  ++     
Sbjct: 197 FSATLSYRVKELAFENMNNAESIEIEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEWP 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDVA
Sbjct: 257 DRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLEDFTKGTLDILVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 317 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSI 357


>gi|67968237|dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
          Length = 779

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 184/342 (53%), Gaps = 11/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +   GY+  T VQ+A +   L ++D++  A TGSGKT A+ + + + LL +    + A
Sbjct: 360 QNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPVMNILLEQG--VAGA 417

Query: 73  S-----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           S      P  + +APTRELA+Q+ RE       + +   +  GG  V+ +R +LQ G +I
Sbjct: 418 SHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVNHQRTNLQAGCNI 477

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK--RRML 183
           +V T GRL D +     + + ++ ++LDEAD MLD+GF  DIE +++  + P K  RR+ 
Sbjct: 478 LVATAGRLKDFLDRGIFDFTAVRFLILDEADRMLDMGFGPDIEKMVNHPTMPPKGIRRVC 537

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA  Y +D + V        + D++      +  D+   ++ +L+  G
Sbjct: 538 MFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDKRAKLMEVLQDLG 597

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  ++ +       L  +  Q  ++ G+  Q +R  AL+  ++G   + +AT+V
Sbjct: 598 DAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFKNGVRNILVATNV 657

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AARG+D+  +  V++ +L ++ E  +HR GRTGR G  G S+
Sbjct: 658 AARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSI 699


>gi|262164692|ref|ZP_06032430.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027072|gb|EEY45739.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 430

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 170/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 42  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 94

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 95  RELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPNILVATTGRLFD-LTQSG 153

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+     
Sbjct: 154 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHA 213

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 214 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 273

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 274 LNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVINFELPM 333

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G+++ ++
Sbjct: 334 HAETYVHRVGRTARAGQQGIALSLV 358


>gi|223634695|sp|A5DGM4|SPB4_PICGU RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|190346280|gb|EDK38327.2| hypothetical protein PGUG_02425 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 601

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 188/362 (51%), Gaps = 25/362 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+ ++T VQ + +      KDV+V A TGSGKT+AF + +   +        
Sbjct: 25  IHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENR 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-----KTGVVVAVCIGGVSVHRERRDL---- 121
            +S    + I+PTRELA Q+      L       +  +   + +G ++  RE  DL    
Sbjct: 85  GSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVRE--DLNAFA 142

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N   I++ TPGRL D      +  S ++ VVLDEAD +LD+ F++D+  IL   PK+RR
Sbjct: 143 ENKPQIIIATPGRLLDFFSSNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRR 202

Query: 182 MLMFSATISPA----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +FSAT+S A      T   N  K +V  N A    Q   ++Y  ++V    +   ++N
Sbjct: 203 TGLFSATLSSAGDSIFRTGMSNPVKISVNSNKAESKPQSLTVNY--MMVNPETKIAVLIN 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALS---GELSQQERSNALQMMRDG 293
           +L     K  IV+  T ASV  F  V  + H  + V L+   G+L  + R  A+    +G
Sbjct: 261 MLSTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDVNLTSIHGQLLAKARLKAMNKFTEG 320

Query: 294 RAR----VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
             R    V + TDVAARGID+P+++LVI  +  ++P+  LHR GRTGRA + G ++ ++ 
Sbjct: 321 DVRTSKHVLLTTDVAARGIDIPEVDLVIQLDPPTDPDMFLHRCGRTGRANKVGRAIVMLN 380

Query: 350 QN 351
            N
Sbjct: 381 NN 382


>gi|163942044|ref|YP_001646928.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013506|ref|ZP_04170641.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
 gi|229061981|ref|ZP_04199307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|229135112|ref|ZP_04263914.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|229169035|ref|ZP_04296751.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|163864241|gb|ABY45300.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614444|gb|EEK71553.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|228648341|gb|EEL04374.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|228717290|gb|EEL68963.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|228747787|gb|EEL97655.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 177/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   ++  +QTGSGKT A+       LL   +R   +
Sbjct: 17  DAVRELRFTEPTGIQKKIFPVVKKGVSIIGQSQTGSGKTHAY-------LLPTLNRIDAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +ID+  V     ++   + N+L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIDHYLVPSRHRNKTELVKNMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+         LAE   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 IVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRRKMMKQVRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL  + +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPPDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|312889170|ref|ZP_07748727.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311298332|gb|EFQ75444.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 404

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 179/331 (54%), Gaps = 13/331 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + E +   GY   T +Q   +   L   D++  AQTG+GKT A+       LL  
Sbjct: 7   NFNEPLFEGIQSMGYTTPTPIQGMAIPIILEGHDLIACAQTGTGKTAAY-------LLPV 59

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV--SVH-RERRD 120
            D  S  + P    L +APTRELA Q+ ++++ L   TGV      GG   SV+ ++R+ 
Sbjct: 60  LDHISRKTKPKINTLILAPTRELAQQIDQQIQGLAYFTGVTSVAIFGGGDGSVYEQQRKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +Q+ A+I++ TPGR   H+    L +  L+ ++LDEAD MLD+GF DDI  I+   PKKR
Sbjct: 120 IQHHANILIATPGRFLAHLASGVLKLDDLQHLILDEADRMLDMGFMDDIMRIISFLPKKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA +   +  ++NIA  ++    ID +   V  + +      +L+
Sbjct: 180 QTLLFSATMPGRIRKLAGSILNNPQQINIAL-SQPAVGIDQQIYKVYDNQKTALTEMLLK 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F ST+  V    KVL +   +V A   +L Q ER   L   ++ + +V I 
Sbjct: 239 DAAYTSVIIFASTKEKVKEVYKVLGKLKVKVEAFHSDLKQAEREEILLQFKNRKLQVLIG 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           TDV +RGID+  ++LVI+ ++  +PE+ +HR
Sbjct: 299 TDVLSRGIDVEGIDLVINYDVPGDPEDYIHR 329


>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 441

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 183/349 (52%), Gaps = 9/349 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +A+ ++GY   T++Q+  L   +  +DVL SA TG+GKT AF L     LL
Sbjct: 10  FDLAPELL-KAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPAIQHLL 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 69  -DYPRRKPG-APRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A+    + V+++     R+   I    Y A   +   +   +   +
Sbjct: 187 LFSATLEGDLLEDFAERTLNEPVKIDAEPSRRERKKIQQWYYHA--DSNEHKFKLLARFI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V +
Sbjct: 245 EQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +TDV+ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V  +
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFV 353


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 23/379 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ + +A++  GY + T +Q       L+  D++  A+TGSGKTV +       + A  +
Sbjct: 26  PQQLLDAVTRAGYTSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMHIRARAN 85

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P    +APTRELA Q+  E        G+      GG     + R+L++G  I
Sbjct: 86  GPRPV-GPTVAVLAPTRELATQIQEETAKFGRAIGMFSVCLYGGAPKGMQLRELRSGPQI 144

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR------ 181
            + TPGRL D +    +N+     VVLDEAD MLD+GF   I  IL  +P  R+      
Sbjct: 145 AIATPGRLNDFLESGAVNLGSATYVVLDEADRMLDMGFEPQIRKILARAPPARQARSISH 204

Query: 182 ------MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDN 233
                  L F+AT   A+  +A     + ++VNI   +   ++ D   V+       +  
Sbjct: 205 WSPCDPTLFFTATWPKAVVRVATAILTNPIQVNIGDTDSLVANKDISQVIEVCGGFQKQQ 264

Query: 234 AIVNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            ++ +LR   A+   AIVFCST+    +  + +         + G+  Q+ER   +   +
Sbjct: 265 RLMEVLRNPPAQPLKAIVFCSTKRMCDQIGRSMGG---MGAVIHGDKEQRERDYIINQFK 321

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP- 349
            GR  V +ATDVAARG+D+ ++ LV++ +  +  E+ +HR GRTGRAG KG +  F+ P 
Sbjct: 322 SGRVPVLVATDVAARGLDIKEVNLVVNFDFPNQIEDYVHRIGRTGRAGNKGHAHSFIEPG 381

Query: 350 -QNMQRRAERLFREANVSV 367
             NM R+   + R+A  +V
Sbjct: 382 EGNMARKLIPILRDAGQTV 400


>gi|145349289|ref|XP_001419069.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579300|gb|ABO97362.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 478

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 131/372 (35%), Positives = 194/372 (52%), Gaps = 19/372 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL   GY + T+VQ   L       D LV A+TGSGKT+AF L  A   ++     +   
Sbjct: 69  ALRRMGYESPTAVQAQCLPVIWSGHDALVMAKTGSGKTLAF-LLPAYAQISRQRPLTKRE 127

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC---IGGVSVHRERRDLQNGAHIVVG 130
            P+AL +APTRELA Q+  E    + K GV  A C    GGVS   + + L+ GA IVV 
Sbjct: 128 GPIALVLAPTRELASQIANEAHK-FTKFGVSGARCCAIFGGVSKRDQFKKLRAGAEIVVA 186

Query: 131 TPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D +  K   N+  +  + LDEAD MLD+GF   +  I  +    R+ +MFSAT+
Sbjct: 187 TPGRLVDVLCMKNSTNLRRVTYLALDEADRMLDMGFEKIVRSICQAVRPDRQCVMFSATM 246

Query: 190 SPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG----A 244
             A+  LA++   +DAV V+I +    + D+  R V+    D       +    G     
Sbjct: 247 PAAMQRLARDVLARDAVTVSIGNVGGANEDV--RQVVYVFEDDARRAAWLFENLGDAVDE 304

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF + ++SV      LA    + VAL G+L Q +R  A++  +   A V +ATDVA
Sbjct: 305 GQAIVFVNHKSSVEELVNELATRGIKAVALHGDLDQAQRQFAMKAFKSEHAHVLVATDVA 364

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR---KGMSVFVIPQNMQRRAERLFR 361
           ARG+D+  ++ V++   + +    +HR GRTGRAG    +  ++F   ++  + A++L  
Sbjct: 365 ARGLDVEAIKTVVNFHPARDMSTHVHRIGRTGRAGALDGRAYTLFT-ARDSAKFAQQL-- 421

Query: 362 EANVSVVWEPAP 373
           E N+    +P P
Sbjct: 422 EQNLEAAGQPVP 433


>gi|28901554|ref|NP_801209.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363105|ref|ZP_05775974.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880390|ref|ZP_05892745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260894758|ref|ZP_05903254.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260900107|ref|ZP_05908502.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28810101|dbj|BAC63042.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089408|gb|EFO39103.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092166|gb|EFO41861.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109992|gb|EFO47532.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111933|gb|EFO49473.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 412

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 170/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L     R +P     AL + PT
Sbjct: 24  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKL-----RVNPEQK--ALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   +  +     +      GGV   ++++ L    HI+V T GRL D +   G
Sbjct: 77  RELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQQQALATNPHILVATTGRLVD-LANNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S +  +VLDEAD +LD+GF  D++ I   +  +R+  MFSAT S  +    K   + 
Sbjct: 136 LDLSKVHYLVLDEADRLLDMGFWPDVQNIAMQTSNQRQTAMFSATFSDELKGKVKLLMQA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K 
Sbjct: 196 PKQVAAHQENSTNQDIVETLYLVNKGSKTKALIELIKQNSWTQVLVFIGAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGISTNALHGDKSQAEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGEQGVAMSLV 340


>gi|313205893|ref|YP_004045070.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445209|gb|ADQ81564.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022205|gb|EFT35233.1| ATP-dependent RNA helicase [Riemerella anatipestifer RA-YM]
 gi|325336667|gb|ADZ12941.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 449

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 191/378 (50%), Gaps = 22/378 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I + L++      T +Q+    P L  +D++  AQTG+GKT+A+ L +      +N
Sbjct: 10  LPEKILDILADLELFEPTPIQQKSFKPILSGRDIMGIAQTGTGKTLAYLLPVL-----KN 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +++ +  P  L + PTREL VQV   LE L  K    +    GG +++ ++    NG  
Sbjct: 65  WKYNKSGNPTVLVLVPTRELVVQVAEILEKLCEKLSTRIIGVYGGKNINTQKLLFDNGCD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D      +++  ++ +++DE DEML+LGFR  +  I +   +KR+ ++FS
Sbjct: 125 ILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMREKRQNILFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++ A+  +   Y  + + +++A        I   A  V      N  +N L++   K+
Sbjct: 185 ATMTDAVDEMLDEYFANPIEISLAKSGTPLEKIQQIAFKVT---NFNTKINFLQHLLDKD 241

Query: 247 -----AIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 ++FC+ +      FTK+   +      +    SQ  R  A++       R  I 
Sbjct: 242 KSMSKVLIFCNNKKHADYLFTKIDEIYPESFDVIHSNKSQNYRLRAMKKFEQEEVRGLIT 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+ D+  VI+ E+   PE  +HR GRTGRA + G+++  I +    + E LF
Sbjct: 302 TDVMARGLDISDISHVINFEIPDIPEQYIHRIGRTGRADKDGIALSFITE----KEEALF 357

Query: 361 REANV----SVVWEPAPS 374
            +  +     V  +P P 
Sbjct: 358 LDIEILMKKEVEVQPMPE 375


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 176/370 (47%), Gaps = 34/370 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAST 61
            P  I   + +  + + T +Q       L  +D++  AQTGSGKT +F L     A A  
Sbjct: 84  FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIVHAKAQP 143

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L   D       P+ L + PTRELA QV +  E      G   A   GG S   +   L
Sbjct: 144 SLKRGD------GPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  ++      R+
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDI-----DYRAVLVALS 229
            LM+SAT    +  LA+++  D +++N+ S         RQH +I      ++ +L  L+
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLN 317

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
             DNA V           +VF  T+       + L +  F   A+ G+  Q+ER  AL M
Sbjct: 318 SFDNARV-----------LVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDM 366

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G   V +ATDVA+RG+D+ D+  +I+ +  S  E+ +HR GRTGR+ +KG +     
Sbjct: 367 FREGHISVLVATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFS 426

Query: 350 QNMQRRAERL 359
               R A  L
Sbjct: 427 AKQPRLAREL 436


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 185/362 (51%), Gaps = 10/362 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +  P  I +      +   T +Q       +  +D++  A+TGSGKT+++ L  A  
Sbjct: 89  FEEVGFPAEIADEWRYAEFTTPTPIQSQGWPIAMSGRDMVGIAKTGSGKTLSY-LLPALM 147

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRD 120
            + +  R      P+AL +APTRELA Q+ +++   + +   +   C+ GG +  ++  D
Sbjct: 148 HIDQQSRLRRGDGPIALILAPTRELAQQI-KQVTDDFGRAMKIKNTCLFGGGAKRQQGDD 206

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++      
Sbjct: 207 LKYGVEIVIATPGRLIDFLSSEHTNLRRCSYLVLDEADRMLDMGFEPQIRAIIEQIRPDH 266

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL- 239
           + LM+SAT   A++ L K+Y KD +++N+ S     +    + + V       A ++IL 
Sbjct: 267 QTLMWSATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNILQIIDVCQEHEKEAKLSILL 326

Query: 240 ---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      I+F  T+  V   T+ +    +  + + G+ SQ+ER   L   R G+  
Sbjct: 327 REIMAEKECKTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFRSGKNP 386

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR 355
           + IATDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR+   G +  F  P N  R 
Sbjct: 387 ILIATDVAARGLDVDDVKFVINFDYPTTSEDYIHRIGRTGRSNNTGTAYTFFTPDNAGRA 446

Query: 356 AE 357
            E
Sbjct: 447 RE 448


>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 400

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 184/341 (53%), Gaps = 7/341 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPASAPLA 77
           GY   T VQ   +   L+ +DV+  AQTG+GKT AF L +   LL E  ++  P      
Sbjct: 20  GYEVPTPVQLKAIPAVLQGRDVMGLAQTGTGKTAAFVLPVLQRLLDEEAEKRGPVKV--- 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA+Q       L  +TG+  A   GG  + ++ ++++    ++  TPGRL D
Sbjct: 77  LVLSPTRELALQTHETFIELGRQTGIRSAAVYGGAGIGKQAKEVKK-VTVINATPGRLLD 135

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + +++S +  ++LDEAD MLD+GF D++E +L   P +R+ LMFSAT+  AI +L+
Sbjct: 136 LLEREEIDLSQVDTLILDEADRMLDMGFMDEVEKVLAKLPAERQNLMFSATMPDAINSLS 195

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           KN   D   V +A        +   +  V +  + + +  +      +  +VF  T+   
Sbjct: 196 KNILHDPEVVRVAV-TVSADGVSLYSCPVPVHLKQSFLKVLFNEIEFERVLVFVRTKRWA 254

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            R  + LA+       L G+LSQ +R+  L   + G   V +ATD+AARGID  ++  VI
Sbjct: 255 RRLAQRLAKGGLAAADLHGDLSQSKRNRTLNGFKFGDFTVLVATDLAARGIDCSNISHVI 314

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           + ++  N E  +HR+GRTGRA  KG +  FV  ++  R AE
Sbjct: 315 NYDMPDNVEIFVHRTGRTGRADAKGTAYTFVADEDKARLAE 355


>gi|254581160|ref|XP_002496565.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
 gi|238939457|emb|CAR27632.1| ZYRO0D03058p [Zygosaccharomyces rouxii]
          Length = 395

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 10/314 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DVL  AQ+G+GKT  F +A    +           AP AL
Sbjct: 41  GFEEPSAIQQRAILPIIEAHDVLAQAQSGTGKTGTFSIAALQRIDVN------VKAPQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     + V  CIGG S   +   L++ A IVVGTPGR+ D+
Sbjct: 95  MLAPTRELALQIQKVVIALAFHMDIKVHACIGGTSFQEDAEGLRD-AQIVVGTPGRVFDN 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ +     H+K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 154 IQRRKFKTDHIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 213

Query: 199 NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + ++ VR+ +  +      I   Y  V   L   D  + ++        A++FC+TR  
Sbjct: 214 KFMRNPVRILVKKDELTLEGIQQFYINVEEELYKYD-CLTDLYDSISVTQAVIFCNTRRK 272

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V ++  +L QQER   ++  R G +R+ I+TD+ ARGID+  + LV
Sbjct: 273 VEELTQKLRADSFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLV 332

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 333 INYDLPTNKENYIH 346


>gi|253988777|ref|YP_003040133.1| ATP-dependent RNA helicase SrmB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780227|emb|CAQ83388.1| srmB [Photorhabdus asymbiotica]
          Length = 448

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 181/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ +GY   T++Q A +   +  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALNNKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  + + L A T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVANQAKELAAHTNLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   KD + ++     R+   I    YRA    L  +   + ++L+      +I
Sbjct: 195 AIRDFAERLLKDPIEIDAEPSRRERKKIQQFYYRA--DNLKHKTALLCHLLKQPDVTKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +   +   L GE+ Q +R+ A++ + DG   V ++TDVA+RG+
Sbjct: 253 IFVRKRERVHELVDELRQAGIKAWYLEGEMVQAKRTEAVKRLNDGSVNVLVSTDVASRGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++
Sbjct: 313 DIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLV 352


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 12/341 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  +    +   A
Sbjct: 194 LQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRA 253

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+Q+  E+  +  K  + V+   GG    ++   +++G   +VGTPGR
Sbjct: 254 PRVIILTPTRELAIQITNEIRSITKK--LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGR 311

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATI 189
           + D ++   L+++ LK VVLDE D M D+GF + +E IL     + P++  + L+FSAT 
Sbjct: 312 VRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSATC 371

Query: 190 SPAITTLAKNY-QKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y +K   ++++     Q   + +++ A+    S +   + ++++ Y G+ 
Sbjct: 372 PDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSH 431

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC ++                  +L G+L Q+ER   L+  R G   V IAT+VA
Sbjct: 432 GKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVA 491

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 492 ARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 532


>gi|308172603|ref|YP_003919308.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605467|emb|CBI41838.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens DSM
           7]
          Length = 376

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 181/333 (54%), Gaps = 10/333 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+   T +QE      +  KDV+  + TG+GKT+A+ L +        +R +
Sbjct: 15  IAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVL-------ERIN 67

Query: 71  PASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P    P  + +AP+REL +Q+ + ++     + +     IGG +V ++   L+N  HI+ 
Sbjct: 68  PEQKHPQVIILAPSRELVMQIFQVIQDWKKGSDLRALSLIGGANVKKQVEKLKNKPHIIA 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ + R++L FSAT+
Sbjct: 128 GTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKEHRETMKKIIKTTLRDRQLLSFSATL 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P    +      +   + +     + + + ++ ++    D+   +  + R +G + A+V
Sbjct: 188 QPETEEVLNEIAHEPAVLKVKRNTEEKARVTHQYLVCDQRDKVKLLQKLSRLNGMQ-ALV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F     ++S + + LA H   +  L GE  + ER+N L     G   + +ATD+AARG+D
Sbjct: 247 FVRDIGNLSVYAEKLAYHHVDLGILHGEAKKMERANILSAFERGEFPLLLATDIAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           + DL  VIHA++  N +  +HRSGRTGRAG++G
Sbjct: 307 IDDLPYVIHADI-PNEDGYIHRSGRTGRAGKEG 338


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 185/357 (51%), Gaps = 8/357 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P  + E +    +   T +Q       L+ +D++  AQTGSGKT+A+ L  A   +
Sbjct: 114 YASFPDYVMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLP-AIVHI 172

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
                      P+ L + PTRELA QV +E    + ++  +   C+ GG     + RDL+
Sbjct: 173 NHQPYLERGDGPICLVLTPTRELAQQVQQEAS-KFGRSSRIKNTCVFGGSPKGPQIRDLE 231

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  + + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ 
Sbjct: 232 RGVEVCIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQT 291

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNIL-R 240
           LM+SAT    +  LA+ + K+  ++NI A +   + +I     +V   ++D+ +  +L  
Sbjct: 292 LMYSATWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLLEE 351

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G K    I+F  T+  V   T+ +    +  + + G+ SQ ER   L   R G+A + 
Sbjct: 352 IMGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAPIL 411

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
           +ATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +  F  P N+++
Sbjct: 412 VATDVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTARSDRTGTAYTFFTPSNLKQ 468


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 183/341 (53%), Gaps = 5/341 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   D     
Sbjct: 26  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---DLKGAR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q  ++++     T +   +  GG     +   L+    +++GTP
Sbjct: 83  VEIRALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPDVLIGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
           GRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FSAT    
Sbjct: 143 GRLLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGA 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVF 250
           A+  +     KD   + + S ++       + +         AIV  +L       AI+F
Sbjct: 203 ALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHKEAIVQWLLANEKFDKAIIF 262

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TR    R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+D+
Sbjct: 263 TNTRVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLDI 322

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 323 DGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHN 363


>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 441

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 177/353 (50%), Gaps = 6/353 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 50  AIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 108

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 109 ARV-LILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHADILATTQDIVVATPG 167

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ ++FSAT+    
Sbjct: 168 RLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTMLFSATLEGKG 227

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +     +   D   ++     R+   I          +   A++  +  + A+  IVF  
Sbjct: 228 VEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLKDIINNQAERTIVFLK 287

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++     L         + GE+ Q  R+NA+   RDG   V +ATDVAARGIDLPD
Sbjct: 288 TRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVLLATDVAARGIDLPD 347

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           +  V++ ++  + +  LHR GRT RAG+KG ++ ++    Q M  R  R  +E
Sbjct: 348 VSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVKE 400


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score =  173 bits (438), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 16  INEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 68

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 69  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 129 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 189 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 249 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 309 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 347


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 174/338 (51%), Gaps = 5/338 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   G+   T VQE  +   L  +DV+ +A TG+GKT AF L L   +     R     
Sbjct: 17  AVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFERI----GRAKRPG 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +P AL ++PTREL  Q+      L   +   +   +GG     +   L  G  ++V TPG
Sbjct: 73  SPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIAKLDRGIDVLVATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    + +  ++ +VLDEAD MLD+GF   ++ ++ ++P  R+ L+FSAT+   +
Sbjct: 133 RLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSSRQTLLFSATLDRKV 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                +  KD   V ++ +      ID   + V    +   +  +L+  G+K  IVF  T
Sbjct: 193 MQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPALLRLVLQQRGSKRVIVFADT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +      T  L    F+  ++  + +Q +R  AL+    G   V +ATDV ARGID+ ++
Sbjct: 253 KTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLVATDVLARGIDVSNI 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           E V++ +L  +PE+ +HR GRTGRAG  G ++ FV P+
Sbjct: 313 EYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPE 350


>gi|171847235|gb|AAI61473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 198/346 (57%), Gaps = 10/346 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF   + +  L    +F P +
Sbjct: 161 AVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAF--LIPAIELVYKLKFMPRN 218

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q    L+ L A       + +GG +   E + L NG +IVV TPG
Sbjct: 219 GTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANGVNIVVATPG 278

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++   G    +L+ +V+DEAD +L++GF  +++ I++  PK+R+ ++FSAT +  
Sbjct: 279 RLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTMLFSATQTRK 338

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNAI 248
           +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  +
Sbjct: 339 VEDLARISLKKEPLYVGV-DDHKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKMM 397

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 398 VFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 457

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 458 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGRGHALLILRPEEL 503


>gi|146197815|dbj|BAF57622.1| putative RNA helicase protein [Dugesia japonica]
          Length = 515

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 182/367 (49%), Gaps = 25/367 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEA---ILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           ++I   + E L + G+  +T +Q+    ILN  L   D+L SA+TGSGKT+A+   L + 
Sbjct: 98  DDIDSRLSEILMKNGHDGMTQIQKHTFDILNRQL--IDILGSAETGSGKTIAYLAPLLNN 155

Query: 62  L-----------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           +           L +ND       PL L +APTREL  Q+    + L   T +     IG
Sbjct: 156 IMKHYPEEMMNELKQND--EELQYPLLLVLAPTRELVNQITSVAKTLLKLTHLRSVSVIG 213

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV    +  D   G H ++ TPGRL D       ++ +   +V+DEAD MLD+GF   I 
Sbjct: 214 GVDARSQINDASRGCHALIATPGRLKDLTDRGIFSLKYCNKLVIDEADRMLDMGFEPQIR 273

Query: 171 FILDSSPK--KRRMLMFSATISPAITTLAKNYQKD---AVRVNIASENRQHSDIDYRAVL 225
            I+++ P   KR   MFSAT   ++ +LA    K     + V   S   +    D     
Sbjct: 274 EIINNLPSVSKRHTSMFSATFPKSVMSLASKLMKPNFGEITVGKNSGTNEACIPDSIEQE 333

Query: 226 VALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             L++ D+   N   +  +  K  IVFC+ +  V  F +   +    +  L G+L+Q++R
Sbjct: 334 FILTESDSIFRNCFDFLQNNNKKTIVFCNKKMDVDIFYRFSTKKNITIAKLHGDLTQRQR 393

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
                + ++ R ++ +AT VAARGID+ D+E VI+  L  N ++ +HR GR GR GR G 
Sbjct: 394 DYEFDLFKNNRTQILVATSVAARGIDVSDIECVINLGLPVNLDDYIHRVGRCGRMGRPGK 453

Query: 344 SVFVIPQ 350
           S+  + Q
Sbjct: 454 SITFVDQ 460


>gi|229514398|ref|ZP_04403859.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348378|gb|EEO13336.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 416

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 22  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 70  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 126 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 245 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 305 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 350


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 13  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 65

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 66  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 344


>gi|229528115|ref|ZP_04417506.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334477|gb|EEN99962.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 416

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 22  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 70  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 126 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 185 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 245 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 305 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 350


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 195/382 (51%), Gaps = 16/382 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P      +  + Y+  T +Q       L   +++  A+TGSGKT+AF L  A   +   
Sbjct: 116 FPDYCMNEIRRQRYIEPTPIQAQAWPIVLSGNNLVGIAKTGSGKTLAFILP-AIVHINGQ 174

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ + +   +  +  V   CI GG    ++  DLQNG 
Sbjct: 175 PTLKRGDGPIALVVAPTRELAQQI-QTVANDFGSSSYVRNTCIFGGAPRSKQASDLQNGV 233

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D ++    N+     +VLDEAD MLD+GF   I  IL      R++LM+
Sbjct: 234 EIVIATPGRLLDFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQILMW 293

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++  + +++NI S E   + +I     + A  ++ + + ++L +   
Sbjct: 294 SATWPKEVRQLAEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKGSKLKDLLSHIYD 353

Query: 245 KNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           ++      I+F +T+  V    + +      V ++ G+ SQ +R N L   R GRA + +
Sbjct: 354 QSGMPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRSGRANILV 413

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRA 356
           ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S  F   +N +  R  
Sbjct: 414 ATDVAARGLDVDGIKYVINFDFPQSSEDYIHRIGRTGRKHSTGTSYAFFTRKNAKCARAL 473

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             + REAN ++     P +E I
Sbjct: 474 IEILREANQNI----NPELEHI 491


>gi|307243961|ref|ZP_07526085.1| DEAD/DEAH box helicase [Peptostreptococcus stomatis DSM 17678]
 gi|306492678|gb|EFM64707.1| DEAD/DEAH box helicase [Peptostreptococcus stomatis DSM 17678]
          Length = 358

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 193/364 (53%), Gaps = 25/364 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++ G  + T VQ   +   L  +++++ + TG+GKT+AF + L +       R  
Sbjct: 12  IVEALAKSGIKSPTPVQATSIGKILHGQNLIIESNTGTGKTLAFLVPLIN-------RIY 64

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAHIV 128
                  L +APTREL +Q+G   + +  K    +++    GG  +  + + L+N  +IV
Sbjct: 65  LGQVDKVLVLAPTRELVIQIGNAAQSIVDKLDKDISILPIYGGRDIQSQIKKLKNKINIV 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL DHI  K ++IS++  +VLDEAD+ML +GFR++I+ ++ ++ K  ++L  SAT
Sbjct: 125 IATPGRLLDHINRKSIDISNIGCLVLDEADQMLLMGFRNEIDTVIRNTKKYDQILFLSAT 184

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKN 246
           + P +  LA  Y K    +++ S N     ID   V +  +DR+       ++       
Sbjct: 185 VDPKVKKLAYRYAKPLDILSLDSNNDIPDLID--QVFIQTTDRNKFEDFCRVIDEDRPFM 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC T+A V +    + +  +    +  ++SQ +R   ++  RD + +  I+TD+++R
Sbjct: 243 AIVFCRTKARVDKLELQMGQAGYNCKKIHSDISQTKREKIIKDFRDLKIQFLISTDLSSR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + +     E+ +HR GR+GR G++G            +A  +  E N++
Sbjct: 303 GLDIGGITHIYNYDFPERVEDYVHRVGRSGRLGKEG------------KATSMVTEKNMT 350

Query: 367 VVWE 370
           V  E
Sbjct: 351 VYEE 354


>gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus]
          Length = 497

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     N+  ++ +VLDEAD +L+ G   F  D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--- 245
           ++  +  L              +  R    +D R +LV    +D  +V++++    +   
Sbjct: 189 LTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 248

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 13  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 65

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 66  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 126 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 186 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNKIIYQLLTIGHPYL 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 246 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 306 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 344


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 178/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL +  +   T VQE  +   L+ KD+L  AQTG+GKT A+ L + S L    D   P 
Sbjct: 14  DALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSKLA---DGGYPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIV 128
            A   L ++PTRELA Q+ + ++ + Y   GV      GG   +R  +++++   GA ++
Sbjct: 71  DAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIKSLALGADVI 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR   HI    +++S +   VLDEAD MLD+GF +DI+ I    P   + +MFSAT
Sbjct: 131 IATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPSTCQTIMFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LAK   K+   V +A  ++    I   A +   + +   I +I +       I
Sbjct: 191 MPSKIEDLAKTLLKEPEMVKLAV-SKPAEKIQQSAYVCYETQKIEIIKDIFKAGDLHRVI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  ++  V +    L         +  +L Q +R + +   + G+  V +ATD+ ARGI
Sbjct: 250 IFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVATDIVARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+ +VI+ ++  + E+ +HR GRT RA R G+++  +
Sbjct: 310 DIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFV 349


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 192/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY + T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 289 LPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILP-AIVHINNQ 347

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 348 QPLQRGEGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 406

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 407 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 466

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     +++ + ++L   Y 
Sbjct: 467 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYD 526

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 527 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 586

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 587 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 646

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 647 VDVLREANQEI 657


>gi|146294034|ref|YP_001184458.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565724|gb|ABP76659.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 438

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 5/328 (1%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ+  +   L  +DVL  AQTGSGKT+AFGL L  ++L +  +    +   AL + PT
Sbjct: 43  TLVQQLAIPAILAGRDVLALAQTGSGKTLAFGLPLLQSVLEQQAQALITAQ--ALVLVPT 100

Query: 84  RELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           RELA QV   L+ +       + +    GGV +  +  +L     I+V TPGR+ D  + 
Sbjct: 101 RELAQQVTLVLQAVAQPLSGAMKIQTLCGGVDIDNQLIELAERPQILVATPGRILDLCKQ 160

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             + +  +K +VLDEAD +L++GF  D++ ++   PK ++ L+FSAT+  A+ TLA    
Sbjct: 161 SHITLDSIKHLVLDEADRLLEMGFWPDVQKLIALMPKHKQTLLFSATLPEALDTLASQLL 220

Query: 202 -KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
             D +RV     N     I+ +  LV    +  A++ +L+ +     +VF S R      
Sbjct: 221 INDPLRVQAHKANSVVPHIEEQLYLVNKGSKTQALIALLKQYQWPQVLVFISARDDADAV 280

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            K LA+   +V AL GE  Q  RS  L   +  R ++ +ATD+ ARGI +  L +V++ +
Sbjct: 281 AKRLAKAGMKVAALHGEKDQTVRSQTLADFKAKRIQILVATDLMARGIHIDALPVVVNLD 340

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           L  +    +HR GRT RAG KG+++ ++
Sbjct: 341 LPMSAPVYVHRIGRTARAGTKGLAISLV 368


>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 411

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 6/368 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +   LL +  R  P 
Sbjct: 15  QAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPMIQHLL-DFPRKKPG 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + L + PTRELA+QV  +   L   T + V    GG+S       L     IVV TP
Sbjct: 74  PARV-LVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDEHAELLGKTQDIVVATP 132

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      + + L+FSAT+   
Sbjct: 133 GRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERLNHECRWRSQSLLFSATLEGK 192

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +   ++    + V V      R+   I          +   A++  +    A+  I+F 
Sbjct: 193 GVREFSEKILNEPVEVEAEPSRRERKKIHQLYHRCDNMEHKLALLENILKEQAERTIIFV 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR  ++     L         + GE++Q  R+N +   RDG   V IATDVAARGIDLP
Sbjct: 253 KTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINVLIATDVAARGIDLP 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  VI+ ++    +  LHR GRT RAG+KG ++ +I  + Q   ER+ R     V   P
Sbjct: 313 DVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIERVSRYMKEEV---P 369

Query: 372 APSVEAIR 379
              +E +R
Sbjct: 370 ERFIEGLR 377


>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
 gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
          Length = 760

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 179/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 191 NLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL-- 248

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L + PTRELA QV   +E L   T +   + +GG+S   +   L++
Sbjct: 249 ---FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 305

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    + +  L  V+LDEAD +L+LGF  +I+ ++   PK+R+ 
Sbjct: 306 MPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQT 365

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNIL 239
           ++FSAT++  I  L K      VR+      ++ + +    V +     S+++  ++ + 
Sbjct: 366 MLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALC 425

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ I+F  T+ S  R   V      +   L G L+Q +R  AL++ +       I
Sbjct: 426 LKTFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 485

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+  +  VI+     + +  LHR GRT RAGR+G +V  +
Sbjct: 486 ATDVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFV 534


>gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 398

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 174/343 (50%), Gaps = 17/343 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E GY   T VQ+  +   L  KD++ +AQTG+GKT AF L L        +RF+ A
Sbjct: 14  QAITELGYKTPTPVQKQAIPIILSGKDLIATAQTGTGKTAAFVLPLL-------ERFTKA 66

Query: 73  SA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                     L + PTRELAVQV   +      T +      GGV    ++  L  G  I
Sbjct: 67  GTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTEAQKERLIEGVDI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D    + L+   LK +VLDEAD M+D+GF  DI  I++  P+ R+ L+FSA
Sbjct: 127 LVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINKIMERLPENRQNLLFSA 186

Query: 188 TISPAITTLAKNYQKD-----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T++  +  LA ++        A  ++I+   R  ++I    + V    +   + +++   
Sbjct: 187 TMTDDVRALAFDFSDSKMTDLAAEISISPNVRAAANIKQWLITVDKDTKSALLSHLINEQ 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   +   ++    LA+       + G+ SQ  R   L   + G  +  +AT 
Sbjct: 247 KWDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRSQAMREKILAQFKSGELKYLVATG 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+D+ +L  V++ +L   PE  +HR GRTGRAG  G ++
Sbjct: 307 VAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGALGEAI 349


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 16  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 68

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 69  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 129 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 189 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQLLTIGHPYL 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 249 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 309 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 347


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 180/349 (51%), Gaps = 26/349 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 324 YDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYEHGLSAPPQSNRQYSR 383

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 384 RKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 443

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFS 186
           TPGRL D I    + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMFS
Sbjct: 444 TPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFS 503

Query: 187 ATISPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAIV 236
           AT    I  LA ++  + +     RV   SEN   +     D D R+ L+ L    ++I 
Sbjct: 504 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYDQDKRSYLLDLL---SSIR 560

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +   Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   
Sbjct: 561 DGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCP 620

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR G  G++ 
Sbjct: 621 ILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVAT 669


>gi|91092300|ref|XP_969217.1| PREDICTED: similar to CG8611 CG8611-PA [Tribolium castaneum]
          Length = 624

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 176/359 (49%), Gaps = 14/359 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  +VNLT+VQE  +   L  K+VL+ +QTGSGKT+A+ L + + LL+   R      
Sbjct: 144 LQKHSFVNLTNVQERAIPEILAGKNVLIRSQTGSGKTLAYALPIMNALLSVEPRLQRQDG 203

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ + PTRELA+Q       +     +V+    GG +   E+  L+ G H+V+GTPGR
Sbjct: 204 VQAIIVVPTRELALQTHEIFGKINTFQWLVIGHLCGGENRKTEKDKLRKGVHVVIGTPGR 263

Query: 135 LCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRMLMFSATIS 190
           L DHI         ++K +VLDEAD +LD+GF+ DI  I   LD + +KR+ ++ SAT++
Sbjct: 264 LLDHILHTSAFKTENVKCLVLDEADRLLDMGFKKDIVKIVEALDRTKQKRQTILLSATLN 323

Query: 191 PAITTLAKNYQKDAVRVNIASE----NRQH----SDIDYRAVLVALSDRDNAIVNILRYH 242
             I  LA    K+   ++   +    N  H    + +    ++  +  R   +  +L   
Sbjct: 324 KGIAELADFLMKNHTYIDTLDDSPDINPDHMVIPNTVTQEFIMTHIKHRLFTLSAVLLAK 383

Query: 243 GAKNAIVFCSTR--ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 VF +T          +       +   L G + Q  R       +  +  + + 
Sbjct: 384 AKHKVFVFMATSQMDFEDSDEEEEVVLESEFFKLHGNMDQGARKKVFMGFKAAKRGILLC 443

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P+ + +I      + ++ LHR GRTGRAG+ G S+  +    Q    RL
Sbjct: 444 TDVAARGVDVPEADCIIQYTGPQSDDDYLHRVGRTGRAGKSGSSLIFLTHEEQEYIARL 502


>gi|330997868|ref|ZP_08321702.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569472|gb|EGG51242.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 440

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 195/373 (52%), Gaps = 30/373 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L +    +LT++Q+  +    + KD+++ + TGSGKTVA+ L L  +L  EN    
Sbjct: 6   IKEILWKLHIDSLTAMQQTTVEEYRKGKDLVLLSPTGSGKTVAYLLPLVQSLKEEN---- 61

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVV 129
                  + + P+RELA+Q+ +  + +   TG+ V  C GG     E R +++    +++
Sbjct: 62  ---VLQTVVLVPSRELALQIEQVFKSM--GTGIPVMSCYGGRPAMDEHRTMKSLNPQVII 116

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    ++ SH+  +V+DE D+ L++GF++++  ++   P  +R  + SAT 
Sbjct: 117 GTPGRMNDHLNKGNIDASHVHTLVIDEFDKCLEMGFQEEMSEVIAQIPYLKRRFLLSATD 176

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + AI       + D +++N   +  Q  + I    V     D+   +  +L Y G K+++
Sbjct: 177 ALAIPRFVS--EGDFLKLNFLEDEEQIPERIKVYTVKSPQKDKLEVLSKLLCYLGNKSSL 234

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F + R SV R  + L +         G + Q++R  AL    +G   V ++TD+AARG+
Sbjct: 235 IFVNYRESVERVYRYLLQEGISCEMFHGGMEQKDRERALYKFSNGSCNVFVSTDLAARGL 294

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-------PQNMQRRAERLFR 361
           D+P+++ VIH  L  N +  +HR+GRT R    G +VF+I       P+ +Q+  E    
Sbjct: 295 DIPNIDHVIHYHLPLNEDTYIHRNGRTARWDASG-NVFLILGPEEYLPEFIQQIPE---- 349

Query: 362 EANVSVVWE-PAP 373
                 VWE P P
Sbjct: 350 ----EYVWEGPKP 358


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 119/364 (32%), Positives = 193/364 (53%), Gaps = 9/364 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALAS 60
           + F   P ++GE + ++G+   + +Q       L+  D++  AQTG+GKT+AF L  +  
Sbjct: 312 QCFAEYPDLLGE-IEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 370

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-R 119
           T      R     A + L +APTRELA+Q+  E++    +   + AVC+ G    R +  
Sbjct: 371 TEYQSIPRGQRGGANV-LVLAPTRELALQIEMEVKKYSFRD--MRAVCVYGGGCRRMQIS 427

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D++ GA I++ TPGRL D ++ K +++S +  +VLDEAD MLD+GF   I  +L      
Sbjct: 428 DVERGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPD 487

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVN 237
           R+ +M SAT  P +  LA++Y  + ++V + S +    HS      +L   S++   I +
Sbjct: 488 RQTIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKS 547

Query: 238 ILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + I VFC  +A     +  L    F    + G   Q +R  A+  ++ G  R
Sbjct: 548 FIKNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVR 607

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  I ++    A
Sbjct: 608 ILIATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMA 667

Query: 357 ERLF 360
           + L 
Sbjct: 668 QELI 671


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 192/379 (50%), Gaps = 28/379 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E + +  +   T VQ+  +      +D++  AQTGSGKT  F   +    L+E+ +  P 
Sbjct: 148 ENIKQARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPV----LSESFKHGPT 203

Query: 73  SA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +             P AL +APTREL  Q+  E      ++ V   V  GG  V+ +  
Sbjct: 204 ESSQTDNAFDRRKAHPTALVLAPTRELVSQIYEEARKFSYRSWVRPVVVYGGAEVYLQMD 263

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--- 176
            L+ G  ++V TPGRL D +    +++ ++K +VLDEAD MLD+GF   I  I+      
Sbjct: 264 QLKQGCDLLVATPGRLNDLLERGKISLKNIKYLVLDEADRMLDMGFEIQIRHIIQGCDMP 323

Query: 177 -PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ LMFSAT    I  +AK++  + + +++        +I  R + V   ++ +++
Sbjct: 324 PPGERQTLMFSATFPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVEDDEKKSSL 383

Query: 236 VNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           ++IL       A    ++F  T+      +  L    F   ++ G+ SQ ER  AL+  R
Sbjct: 384 LDILTSTEDTLANGLTLIFVETKKMADILSDFLINQDFPATSIHGDRSQYERERALESFR 443

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++   +   
Sbjct: 444 TGRTPILVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTGVATAFVNRG 503

Query: 349 PQNMQRRAERLFREANVSV 367
            +N+ +    +  EAN  V
Sbjct: 504 NKNVVKDLIEILSEANQEV 522


>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 410

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 181/356 (50%), Gaps = 12/356 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARV-LILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHADILAKTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQTLLFSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +     +  K+   ++     R+   I    +RA  +A      A++  +    A+ +IV
Sbjct: 195 VEGFTADLLKEPAEIDAEPSRRERKKIAQWYHRADDMA---HKLALLKTIINDQAERSIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  ++     L +       + GE+ Q  R+NA+   RDG   V +ATDVAARGID
Sbjct: 252 FLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           LPD+  VI+ ++  + +  LHR GRT RAG+KG ++ ++    Q M  R  R  +E
Sbjct: 312 LPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMDRVARYVKE 367


>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 398

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 180/349 (51%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           + Q I +A+ + GY   T++Q   +   LR +D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPMLEKLSQGE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         L + PTRELAVQV  ++        +      GGV    +++ L  G 
Sbjct: 68  TQRKKRIRG---LILTPTRELAVQVEEKIRDYGQHLALTSLAMYGGVDEQAQKQALIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF DDI  ILD  P   + L+F
Sbjct: 125 DILVATPGRLIDMYGKRAVHFEEVEMLVLDEADRMLDMGFIDDINKILDRLPTDIQHLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +   
Sbjct: 185 SATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLIKENDWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++  + L +   +  A     SQ  RS  L+  + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLLEDFKAGKIQYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+  L  VI+ +L    +  +HR GRTGRA  +G ++ FV   N +
Sbjct: 305 RGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFK 353


>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
 gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
          Length = 445

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 182/352 (51%), Gaps = 12/352 (3%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 10  FEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  NLLDYPRR--KLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIV 236
              +FSAT+    +         + ++++     R+   I    Y A    L  +   + 
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHAD--NLEHKTKLLA 244

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG   
Sbjct: 245 RLISTMKMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVN 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 305 VLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLV 356


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 189/366 (51%), Gaps = 9/366 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPILNRL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     + V V +A        +  +A  V   ++   IV ++      +  I
Sbjct: 191 PSKIQQLANTILNNPVEVKLAVSKPAEKIV--QAAYVCYENQKLGIVRSLFAEEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ +RGI
Sbjct: 249 IFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   + +       + 
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNFKNIENFLEKEIY 368

Query: 369 WEPAPS 374
             P PS
Sbjct: 369 KIPVPS 374


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 20/356 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  I + L   G+   T +Q       L  +D++  A+TGSGKT+++ L  A   + +  
Sbjct: 104 PAEIIDELRYAGFTAPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSY-LIPALIHIDQQP 162

Query: 68  RFSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           R      P+AL ++PTRELA Q+       GR L+  Y  T +      GG    +++ D
Sbjct: 163 RLRRGDGPIALILSPTRELAQQIKQVADDFGRALK--YKNTCL-----FGGGKKRKQQED 215

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 216 LEYGVEIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDR 275

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + LM+SAT    +  L K+Y KD V++N+ S     +    + + V   S++++ +  +L
Sbjct: 276 QTLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQIIDVCQESEKESKLSILL 335

Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R   A+     I+F  T+  V   T+ +    +    + G+ SQ ER + L+  R GR  
Sbjct: 336 REIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTP 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           + IATDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR    G +  F  P N
Sbjct: 396 ILIATDVAARGLDVDDVKFVINFDFPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNN 451


>gi|154493718|ref|ZP_02033038.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
 gi|154086928|gb|EDN85973.1| hypothetical protein PARMER_03059 [Parabacteroides merdae ATCC
           43184]
          Length = 436

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 196/361 (54%), Gaps = 23/361 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++  AL+  G   L  +Q+A+L+     KD+++ + TGSGKT+AF L L +TL  E+ +
Sbjct: 5   EIVVRALANTGITALNEMQQAVLDAG-TTKDMVLLSPTGSGKTLAFLLPLLTTLTDEDKK 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   A+ IAP+RELA+Q+      L A  G  V  C GG  +  E++ L++   ++
Sbjct: 64  IQ------AVIIAPSRELALQIETVFRSLGA--GYKVNCCYGGHPIRTEKKSLEHPPTVL 115

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+    +N+  ++ ++LDE D+ L+LGF  +++ IL   P  RR ++ SAT
Sbjct: 116 IGTPGRIVDHLERGNINLDSVRTLILDEFDKSLELGFLAEMKEILAHLPGVRRRVLTSAT 175

Query: 189 IS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            +   PA T +        VR++   E ++   +  R V   + D+   +  +L      
Sbjct: 176 AAVDIPAFTGITA-----PVRLSFLKEVKESKGLALRVVKSPVKDKLETLYKLLGELKGG 230

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++FC+ R +V R +  L E         G + Q ER  AL   R+G A V I+TD+A+
Sbjct: 231 SALIFCNYRETVERVSNYLTEMGVDNEYFHGGMEQPERERALSHFRNGSATVFISTDLAS 290

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV------IPQNMQRRAERL 359
           RG+D+P+++ VIH  L  + E  +HR+GRT R   +G++  +      IP+ + R  +  
Sbjct: 291 RGLDIPEVKNVIHYHLPVSEEAYVHRNGRTARMNAEGVAYLILNAEETIPEYITREPDEF 350

Query: 360 F 360
           F
Sbjct: 351 F 351


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 314 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 373

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 374 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 433

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 434 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 492

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 493 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDG 552

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 553 PEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 612

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 613 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 659


>gi|156545225|ref|XP_001606735.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 428

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 187/344 (54%), Gaps = 26/344 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F LA    L LAEN      
Sbjct: 60  AISDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAIFVLATLQQLELAEN------ 113

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
              L L +  TRELA Q+ +E E  ++K    V V+V  GG+ + +++  L+N   HIVV
Sbjct: 114 -KVLGLVMCHTRELAFQISKEYER-FSKYLPKVKVSVFFGGMPIQKDKEVLKNNCPHIVV 171

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+   ++GK L++ HLK  +LDE D+ML+ L  R D+++I  S+P  ++++MFSAT
Sbjct: 172 GTPGRISALVKGKKLSLQHLKFFILDECDKMLEQLDMRQDVQYIFRSTPHGKQVMMFSAT 231

Query: 189 ISPAITTLAKNYQKDAVRVNIASENR-------QHSDIDYRAVLVALSDRDNAIVNILRY 241
           +S  I  + K + +D + V +  E +       QH     +      + +   +++ L +
Sbjct: 232 LSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYL---KLKEKEKNKKLFELLDELEF 288

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     ++F  +    +  T++L E  F  + +   ++Q+ER    Q  +D + R+ +AT
Sbjct: 289 N---QVVIFVKSVQRCNSLTQLLTEENFPTIGIHKGMTQEERLTKYQSFKDFQQRILVAT 345

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  RG+D+  + +V + ++  N +  LHR  R GR G KG+++
Sbjct: 346 NLFGRGLDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLAI 389


>gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 545

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 210/417 (50%), Gaps = 22/417 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 19  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 74  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 132

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     N+  ++ +V+DEAD +L+ G   F  D+E IL + P +R+ L+FSAT
Sbjct: 133 GRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSAT 192

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--- 245
           ++  +  L      +       +  R    +D R +LV    +D  +V++++    +   
Sbjct: 193 LTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 252

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 253 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q   ++    E   +
Sbjct: 313 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIK 372

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLAKHDPE 414
           +    +V E A  ++ + + +  R  +  + L++   DEKK ++    ++L   DP+
Sbjct: 373 QQLAELVVEEAEVLQILTQVNVVR-RECEIKLEASHFDEKKEINKRKQMILEGKDPD 428


>gi|253742309|gb|EES99150.1| DEAD box RNA helicase Vasa [Giardia intestinalis ATCC 50581]
          Length = 658

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 193/379 (50%), Gaps = 32/379 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---------TLLAENDRFS 70
           Y   T +QE  +   L   D+L ++QTGSGKT +F   + +         T+L+E DR S
Sbjct: 198 YKQPTPIQENAIPLILSSMDILATSQTGSGKTFSFLSPIVTKLINSHAKDTILSE-DRES 256

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S PLA+ ++PTREL  Q+      L  KT ++V +  GG     ++  L+ G  IV+ 
Sbjct: 257 STSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGAREQKGLLRKGCDIVIA 316

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------DSSPKKRRML 183
           TPGRL D +    L++ +++ +VLDEAD+MLD+GF   I  ++       + S   R+ L
Sbjct: 317 TPGRLKDFLERGCLSLKYVQIMVLDEADKMLDMGFEPQIRDLVYKFDMPGNGSNGSRQTL 376

Query: 184 MFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRA--VLVALSDRDNAIVN 237
           MFSAT    +  +AK Y  +  R++      +        +Y A   + ++  R   +++
Sbjct: 377 MFSATFGGGVQNMAKRYLHNEARIHIGQIGTTTTTIKQQFEYIAETAMKSVDKRIEKLIH 436

Query: 238 ILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L+  G+        ++F  T+  V      L     +V  + G+L Q+ER N L+  +D
Sbjct: 437 XLKSPGSIPTASFLTLIFVETKKDVVYIVTKLLNAGLRVCEMHGDLEQRERQNNLKNFKD 496

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---- 348
           G+  V +ATDVA RGID+  +  V++ +   + +  +HR GRTGRAG +G++   I    
Sbjct: 497 GKTPVLVATDVAQRGIDIGAIRHVVNFDFPKDIDAYIHRIGRTGRAGAEGLATSFILLDT 556

Query: 349 PQNMQRRAERLFREANVSV 367
           P ++ R  + +  ++   V
Sbjct: 557 PHHILRELKNILTQSKQPV 575


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L        D+  
Sbjct: 16  INEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLM-------DKVK 68

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++  + V+  +GG    R+   L++   H
Sbjct: 69  PTIDEVQIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQLNKLKHQQPH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P+K +ML+FS
Sbjct: 129 VVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLPEKLQMLVFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V  +I  +      ID   +     + +  I  +L       
Sbjct: 189 ATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNKIIYQLLTIGHPYL 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 249 AIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQYVVATDLAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+    +  +HR GRTGR G  G ++
Sbjct: 309 GIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAI 347


>gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836 [Chlorella variabilis]
          Length = 461

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 189/365 (51%), Gaps = 6/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ GY   T++Q   L   L  +DVL  A+TGSGKT AF L +   ++ +        
Sbjct: 77  AITKAGYQKPTAIQAQALPAALCGRDVLGIAKTGSGKTAAFVLPMIVHIM-DQPELQKGE 135

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ + +APTRELA Q+ +E         + VA   GG+S H++ +DL+ G  + V TPG
Sbjct: 136 GPIGVIVAPTRELAEQIHKETRRFSKAYNLGVAAAFGGLSKHQQFKDLKAGCEVAVCTPG 195

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D IR K  N+     +V DEAD M D+GF   +  I+      R+ L+FSAT+   +
Sbjct: 196 RMIDLIRMKACNMKRATYLVFDEADRMFDMGFEPQVRSIMGQIRPDRQTLLFSATMPRKV 255

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNIL-RYHGAKNAIVFC 251
             LA +     VR+ +      + DI     +V  L  +   +++ L R+    + +VF 
Sbjct: 256 ERLAGDALTSPVRITVGEVGGANEDIKQVVEVVHDLGSKQKWLLDRLQRFIDDGDVLVFA 315

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A V      L     +V A+ G++ Q  R + L   + G     +ATDVAARG+D+ 
Sbjct: 316 NQKARVDELAAALQAAGAKVAAIHGDMDQHTRMHTLADFKAGAYHALVATDVAARGLDIK 375

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERLFREANVSVVWE 370
            ++ V++ + + + +  +HR GRTGRAG K G++  ++  +  R A  L +  N++   +
Sbjct: 376 SIKTVVNYDAAKDIDTHVHRIGRTGRAGDKDGVAYTLLLPHETRIAGDLVQ--NLATAGQ 433

Query: 371 PAPSV 375
             P++
Sbjct: 434 EVPAM 438


>gi|225457931|ref|XP_002273443.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 732

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 183/362 (50%), Gaps = 31/362 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 131 NLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERLL-- 188

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQV   +E L   T +   + +GG+S   +   L++
Sbjct: 189 ---FRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRS 245

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +VV TPGR+ DH+R    +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ 
Sbjct: 246 MPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQT 305

Query: 183 LMFSATISPAITTLAK-------------NYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           ++FSAT++  +  L K             + ++ A         R+  +++  AVL+AL 
Sbjct: 306 MLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALC 365

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +               AI+F  T+ +  R   +     F+   L G L+Q +R +AL++
Sbjct: 366 SKT----------FTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALEL 415

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R  +    IATDVAARG+D+  ++ VI+     +  + +HR GRT RAGR+G +V  + 
Sbjct: 416 FRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVT 475

Query: 350 QN 351
            N
Sbjct: 476 DN 477


>gi|167392680|ref|XP_001740252.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165895712|gb|EDR23341.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 585

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 185/375 (49%), Gaps = 30/375 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + +N+ Q+I     +  Y   T +Q A +   L+ +D++  A+TG+GKT A+ + L  
Sbjct: 182 MNVCDNLLQLI-----KNTYETPTPIQCASIPIALKMRDLIALAETGTGKTFAYLIPLIQ 236

Query: 61  TLL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +L   +    + AS P AL +APTRELA+Q+ +E   L    G+ V  CIGG S+  + 
Sbjct: 237 FVLKLPKLTEETSASGPYALILAPTRELALQIQQETLKLATPFGLRVCCCIGGESIQPQI 296

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--- 175
            +L NGA IVV  PGRL D +    L +     VVLDEAD+M+DLG    + +I      
Sbjct: 297 EELSNGAEIVVAAPGRLKDLLSQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSELPS 356

Query: 176 -------------------SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                              +P  R   M+SAT+   +  +   Y +  + ++I       
Sbjct: 357 VKDGSTEEIISMEKENASGNPSTRTTFMYSATMPSTLEKITTEYLRRPITISIGKTGNVA 416

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++    V V  + +   +V +++   +   IVF + + +V     +L +     V + G
Sbjct: 417 ENVKQNVVWVEDNMKKRKLVQVIK-SSSPPTIVFVNQQKTVEEICLLLEKEKINCVGIHG 475

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q ER++AL+  +  +  V +AT+V +RGID+  +  VI+ E+    E   HR GRTG
Sbjct: 476 GKRQIERTDALEGFKRKKYPVMVATNVLSRGIDIESVANVINYEMPQKIEEYTHRVGRTG 535

Query: 337 RAGRKGMSVFVIPQN 351
           RAG+ G ++  I +N
Sbjct: 536 RAGKGGNAITFINEN 550


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 434

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 435 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 493

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 494 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDG 553

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 554 PEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 613

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 614 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 660


>gi|159117282|ref|XP_001708861.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
 gi|157436975|gb|EDO81187.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
          Length = 450

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 205/386 (53%), Gaps = 29/386 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAE 65
           P+++ +AL   G++  T++Q+ +L      K  DV+  A+TGSGKT AF +     LL  
Sbjct: 10  PELL-DALERIGWLEPTAIQKEMLTVVSHNKACDVVGVAETGSGKTGAFAIPALQDLL-- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R +       + ++PTRELAVQ       L    G+   + IGGV + ++R+ L    
Sbjct: 67  -ERGTNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRKTLAQQP 125

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           H+++ TPGRL DH+   +G ++  L+ +++DEAD+ML+      +  +    P++RR  +
Sbjct: 126 HVLICTPGRLVDHLATTEGFSLKSLRFLIIDEADKMLEQDMGRAVLNLAKDCPQRRRTFL 185

Query: 185 FSATISPAITTLAKNYQKD---AVRVNIASENRQHSDID----------------YRAVL 225
           FSAT   A+  L +N   D    V + +    +  SD+D                ++ V+
Sbjct: 186 FSATFPSAVQAL-QNECTDRSRLVHIQVGVLTKAASDVDGSTNTQLAVVDNELLSHKMVV 244

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +  +++   +V +L  H A   +VF +  ++V++   +L    F+V  + G + Q +R  
Sbjct: 245 LPHAEKQLGLVVLLNNHAACQIMVFATKISTVTKLALMLTTLGFEVGVVHGSMGQDKRLE 304

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R G  ++ +A+DVA RGID+P+++LVI+ +L     + +HR+GRT RAGR+G ++
Sbjct: 305 ELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTARAGRRGTAL 364

Query: 346 FVIPQNMQRRAERLFREANVSVVWEP 371
            ++ Q      +R+  EA + +  EP
Sbjct: 365 TIVTQYDVVNFKRI--EAMLGIRMEP 388


>gi|308454438|ref|XP_003089847.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
 gi|308268147|gb|EFP12100.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
          Length = 820

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 192/354 (54%), Gaps = 7/354 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +         
Sbjct: 161 LKKYEYTKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELEEGDG 219

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV TPGR
Sbjct: 220 PIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKRGAEIVVCTPGR 279

Query: 135 LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +    GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSAT   
Sbjct: 280 MIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPR 339

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVF 250
            +  LA+   +  V + +  ++   SD+   AV+     +   ++ +L  Y+   ++IVF
Sbjct: 340 HMEALARKVLEKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQGSSIVF 399

Query: 251 CSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
              +         L +  +  VA L G + Q +R +++   + G  +V +AT VAARG+D
Sbjct: 400 VDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLD 459

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFRE 362
           + +L LV++ +  ++ E+ +HR GRTGRAG+KG +  FV+P+ + +   + ++E
Sbjct: 460 VKNLILVVNYDCPNHYEDYVHRVGRTGRAGKKGYAYTFVLPEQISQYGSQNYQE 513


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 176/351 (50%), Gaps = 3/351 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + +     
Sbjct: 288 KAVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQRE-LRAG 346

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ G  IVV TP
Sbjct: 347 DGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCEIVVATP 406

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FSAT    
Sbjct: 407 GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFSATFKKR 466

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVF 250
           I  LA++   D VR+     N  + DI     +    L   +  + +++++      +VF
Sbjct: 467 IERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSEGAVLVF 526

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +A        L    +  + L G++ Q +R+  +   +     + +ATDVAARG+D+
Sbjct: 527 VTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDI 586

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 587 PHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 637


>gi|198413153|ref|XP_002124718.1| PREDICTED: similar to GE24123 [Ciona intestinalis]
          Length = 573

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 182/350 (52%), Gaps = 14/350 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L +  +   T++Q       L  +DV+  AQTGSGKT++F L     + A+     
Sbjct: 157 IDSKLRQSNFNVPTAIQSTGWPATLSGRDVIGIAQTGSGKTLSFILPALIHIQAQRP-LG 215

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL + PTRELAVQ  R +   +A   +  A   GG S + +   +  G  I+V 
Sbjct: 216 RGEGPIALVMCPTRELAVQCER-VANQFAGPFIRTACAYGGSSRNIQLDKIGAGCSILVA 274

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D ++   +N+     +VLDEAD MLD+GF   I  I++     R++ M+SAT  
Sbjct: 275 TPGRLMDFLQHGEVNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVTMWSATWP 334

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNIL-------- 239
             I  LAK++   K A  + + S + Q S+ I  +  +    D+      I+        
Sbjct: 335 SEIRQLAKDFISTKSATHIKVGSSDLQASENIQQKFAICHSPDKFKQFKEIIIELKNANK 394

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            ++      +VFC+T+A+  R ++ L     +  A+ G+ +Q +R + L   R GR+ + 
Sbjct: 395 DQFSQFPKTLVFCNTKATCDRLSQQLRNAGLRSNAIHGDKTQSQRDSVLNNFRRGRSNIL 454

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IATDVAARG+D+ D++ VI+ +      + +HR GRTGRAG++G S  ++
Sbjct: 455 IATDVAARGLDINDIQYVINFDTPPTCTDYIHRIGRTGRAGKQGTSYTLL 504


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 178/346 (51%), Gaps = 20/346 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 310 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 369

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 370 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 429

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMFS 186
           TPGRL D I    + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMFS
Sbjct: 430 TPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFS 489

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------- 239
           AT    I  LA ++  + + + +        +I    + V   D+ + ++++L       
Sbjct: 490 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGP 549

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + +
Sbjct: 550 EYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILV 609

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 610 ATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|313674606|ref|YP_004052602.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941304|gb|ADR20494.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 405

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 191/364 (52%), Gaps = 11/364 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + E L   G+   T +Q   +   L  KD++  AQTG+GKT AF L +   +   
Sbjct: 7   NFHPTLSEGLEMMGFQKATPIQTEAIPKILEGKDLIACAQTGTGKTAAFVLPILHKIANS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGG--VSVHRERRDLQ 122
            +          L IAPTREL  Q+ +++E + Y      +A+  GG   +  ++++ ++
Sbjct: 67  GE----TKGVNTLIIAPTRELVQQIDQQIEGFSYFTNASSIAIYGGGDGAAWEQQKKAIR 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL   +      + +++ ++LDEAD MLD+GF DDI  I+   P+KR+ 
Sbjct: 123 AGVDILVATPGRLIALLNSNETQLDNVQHLILDEADRMLDMGFHDDIMRIVKQLPQKRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+ P I  LA     +   +++ S ++  + I  +A L     +   +  IL   
Sbjct: 183 LLFSATMPPKIKKLAGAILNNPEEISL-SISKPAAGISQKAFLTYDGHKTQLLKFILGSG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF   +  V    + L +    V A S +L Q+ER   ++  R  + +V I TD
Sbjct: 242 IYETAIVFAGKKDKVKSLERDLKDIGMSVKAFSSDLDQKEREIIMRDFRAKKVQVLIGTD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RAERL 359
           + +RGID+ ++ LV++ ++  +PE+ +HR GRT RA  KG ++ F+   +M++  R E L
Sbjct: 302 IISRGIDVENISLVVNYDVPGDPEDYVHRIGRTARAATKGEAITFINEMDMEKFNRIEAL 361

Query: 360 FREA 363
             ++
Sbjct: 362 IEKS 365


>gi|114778510|ref|ZP_01453354.1| ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1]
 gi|114551235|gb|EAU53794.1| ATP-dependent RNA helicase [Mariprofundus ferrooxydans PV-1]
          Length = 439

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 178/332 (53%), Gaps = 3/332 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + + +   G+ ++T VQ+  L   L  KDV    +TG+GKT  F +   + LL  
Sbjct: 10  NLPDALQKGIDALGFTSMTDVQQTALPITLAGKDVAGQGRTGTGKTATFLVTAINRLLTS 69

Query: 66  NDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +     + P AL IAPTREL +Q+  +   L   T + +    GGV   ++ +   +G
Sbjct: 70  PPKTGRKHNFPRALVIAPTRELVIQIASDAHKLAQFTDLKIHTVYGGVDYEKQLKAFDDG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GTPGRL D+++ +   +   + +V+DEAD M DLGF +D+ F++   PK  +R+ 
Sbjct: 130 VDILIGTPGRLIDYLKKRAYELKLTEMLVIDEADRMFDLGFINDLRFMMRRLPKFDERQS 189

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT+S  +  LA  +    V++         S I       A+ D+   ++++LR  
Sbjct: 190 LMFSATLSHRVMELAYEHMNQPVKLRAEEGGITASGIVETMYHTAMDDKLPLLIHLLRES 249

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F + + +  R  + LA + F V  LSG++ Q +R   L+   +G+ ++ +ATD
Sbjct: 250 NVERGMIFINEKRTGERLARNLARYGFSVGILSGDVRQAKRVRILEDFTNGKLQLLVATD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           VA+RG+ +  +  V + +L  + EN +HR GR
Sbjct: 310 VASRGLHIDGVTHVFNYDLPEDAENYVHRIGR 341


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 189/343 (55%), Gaps = 9/343 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSP 71
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+  +  R   
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLKGGRVEI 72

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            S    L + PTRELA Q  ++++     T V   +  GG     +   L+    +++GT
Sbjct: 73  RS----LILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPDVLIGT 128

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
           PGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FSAT   
Sbjct: 129 PGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGG 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAI 248
            A+  +     KD   + + S + Q ++   + ++ A  D+    +   +L       AI
Sbjct: 189 AALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIAQWLLANETFDKAI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+
Sbjct: 248 IFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGL 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 308 DIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN 350


>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
           (Silurana) tropicalis]
          Length = 614

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 203/410 (49%), Gaps = 29/410 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 179 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 238

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  F+    P  L I P+RELA Q    +E+ Y           +  A+CIGG+SV  
Sbjct: 239 EKRLPFAKREGPYGLIICPSRELARQTHSIIEY-YCHLLQEDNFPHLRTALCIGGMSVKE 297

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI  I    
Sbjct: 298 QMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYF 357

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   AK+     + +N+        D+      V    +   ++
Sbjct: 358 KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLL 417

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+ +  
Sbjct: 418 ECLQ-KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREEKKD 476

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G  G++   I ++     
Sbjct: 477 VLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGNTGIATTFINKS----- 531

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                  + SV+ +    ++A+     QR+   P  L  + G ++ M+D+
Sbjct: 532 ------CDESVLMD----LKALLMEAKQRV---PPVLQVLNGSDETMLDI 568


>gi|56202232|dbj|BAD73664.1| putative DEAD box protein [Oryza sativa Japonica Group]
 gi|56202381|dbj|BAD73793.1| putative DEAD box protein [Oryza sativa Japonica Group]
          Length = 423

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 181/342 (52%), Gaps = 14/342 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q  ++   L+ +DV+   QTGSGKT AF L +   LL    R        A 
Sbjct: 2   GWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHR----PCFFAC 57

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA---------HIVV 129
            +APTRELA+Q+ ++ E L +   +  +V     S       L+ G          +  V
Sbjct: 58  VLAPTRELAIQIAKQFEALGSAISLQCSVVWWRSSRACLPEHLRKGFDSWQLWKERNSRV 117

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGRL DH+   KG + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSAT
Sbjct: 118 GTPGRLLDHLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSAT 177

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   K+ V+V +AS+      +     +V    +D  ++++L        +
Sbjct: 178 MTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIM 237

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T  S      +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG+
Sbjct: 238 VFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGL 297

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+  +++VI+ +   N ++ +HR GRT RAG+ G +V ++ Q
Sbjct: 298 DIQGVDVVINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQ 339


>gi|54310595|ref|YP_131615.1| ATP-dependent RNA helicase RhlB [Photobacterium profundum SS9]
 gi|56749602|sp|Q6LLL5|RHLB_PHOPR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|46915038|emb|CAG21813.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 437

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 180/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ E L  +G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL    
Sbjct: 18  PTVL-EGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNYLL---- 72

Query: 68  RFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PAS       P A+ +APTRELA+Q+  +   L A TG+   +  GG +  ++++  
Sbjct: 73  -LNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKVF 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
             G  I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+     +PK 
Sbjct: 132 AEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKA 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +      V +    +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +
Sbjct: 252 EEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGDIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSI 357


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 173/342 (50%), Gaps = 33/342 (9%)

Query: 38  KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
           +D++  A+TGSGKT+AF L AL  T   +         P  L + PTRELA QV +E+  
Sbjct: 170 RDIISIAKTGSGKTLAFMLPALVHT--TKQPHRQRGEGPSVLVLLPTRELAQQV-QEVSI 226

Query: 97  LYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            +  + G+ +    GG S   + RDL+ G  +VV TPGRL D +     N+     +VLD
Sbjct: 227 DFCHSLGLKMTCLFGGASKGPQARDLERGVDVVVATPGRLLDFLDNGTTNMKRCSYLVLD 286

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD MLD+GF   I  I+      R+ LMFSAT    + ++A ++QKDA  +N+ S    
Sbjct: 287 EADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATWPKEVRSMASDFQKDAAFLNVGS---- 342

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAK----------------NAIVFCSTRASVSR 259
                   + +A +     +V+IL  HG +                  I+F  T+     
Sbjct: 343 --------LELAANHNITQVVDILEEHGKQAKLMDLLNQIMNQKECKTIIFVETKRKADE 394

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATDVAARG+D+ D++ VI+ 
Sbjct: 395 LTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPILLATDVAARGLDVDDIKFVINY 454

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  +N E+ +HR GRTGR  +KG +          +A+ L +
Sbjct: 455 DYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAKDLLK 496


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 178/349 (51%), Gaps = 10/349 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +S+ GY   T VQ+  +   L  +D++  AQTGSGKT AF + + + ++ +
Sbjct: 73  NMCDTLTMNISKAGYWKPTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLVPVVAQMMRD 132

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                 F     P  +  APTREL  Q+  E       T +   V  GG       R ++
Sbjct: 133 GVTASAFKEQQEPECIITAPTRELIYQIFLEARKFVYGTCIRPVVIYGGTQTSYLIRQVE 192

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSP 177
            G +I+  TPGRL D I RGK + + ++K +VLDEAD MLD+GF  D++ ++        
Sbjct: 193 QGCNILCATPGRLLDIIGRGK-IGLHNVKYLVLDEADRMLDMGFGADMKKLVSFPGMPQK 251

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +KR+ LMFSAT    +  LA  + K D + V +       SD+    + V+   + + ++
Sbjct: 252 EKRQTLMFSATFPEEVQRLAYEFLKTDFIFVVVGCAGGACSDVQQNILQVSQYFKRDKLI 311

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL   G +  +VF  T+         L +      ++ G+  Q+ER  AL   R GR  
Sbjct: 312 EILHSTGNERTLVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGDFRSGRRP 371

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +AT VAARG+D+ +++ VI+ +L S  E  +HR GRTGR G  G +V
Sbjct: 372 VLVATSVAARGLDIENVQHVINFDLPSTIEEYVHRIGRTGRCGNTGKAV 420


>gi|260800652|ref|XP_002595212.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
 gi|229280456|gb|EEN51224.1| hypothetical protein BRAFLDRAFT_238703 [Branchiostoma floridae]
          Length = 407

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 169/313 (53%), Gaps = 3/313 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +A+   L  +    +      AL
Sbjct: 49  GFEKPSAIQQRAILPCCQGRDVIAQAQSGTGKTATFAVAILQQLAMKAG--NAGRNCQAL 106

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG +V  +   L+ G HIVVGTPGR+ D 
Sbjct: 107 VLAPTRELAQQIQKVVLALGDYMNARCHACIGGTNVRSDIAALEEGVHIVVGTPGRVNDM 166

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + LN S +K  VLDEADEML  GF+D I  I    P   ++++ SAT+   +  +  
Sbjct: 167 IGRRALNTSDVKLFVLDEADEMLSRGFKDQIYDIFKFLPSDIQVILLSATMPSDVLEVTT 226

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  E      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 227 KFMRNPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFCNTRRKV 286

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ ++   F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 287 DWLTEKMSGRDFTVSAMHGDMDQRERDLIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 346

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 347 NYDLPTNRENYIH 359


>gi|163754240|ref|ZP_02161363.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161326454|gb|EDP97780.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 450

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 184/370 (49%), Gaps = 13/370 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +QE   +     KDV+  AQTG+GKT A+ L L   L     +FS   
Sbjct: 16  AIEDLGFTTPTPIQEQSFSVIRGGKDVVGIAQTGTGKTFAYMLPLLRDL-----KFSKQV 70

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL +QV  ++E       V +    GGV+++ + + LQ GA IVV TPG
Sbjct: 71  NPRILVLVPTRELVIQVVEQIELFAKYINVRIVGVYGGVNMNTQAQSLQQGADIVVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  + L +  +K +V+DE D MLDLGFR  I  I +  P++R+ +MFSAT++  +
Sbjct: 131 RLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPEQRQNIMFSATMTDDV 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILR-YHGAKNAIVFC 251
             L  ++     +++IA       +I      V     + N + ++L+        +VF 
Sbjct: 191 NLLIDDFFIAPHKISIAVSGTPLDNISQTCYAVQNFYTKVNLLTHLLKDKEIYSKVLVFI 250

Query: 252 STRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           S +    R    L +   + VA +    +Q  R  +++    G  R+ +ATDV ARG+DL
Sbjct: 251 SNKRIADRLFDCLQKDFGEEVAVIHSNKTQNYRIRSIENFNTGENRILVATDVMARGLDL 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V +    + PEN +HR GR GRA  KG +V         + E  ++EA   ++  
Sbjct: 311 DMITHVFNFNTPNYPENYMHRIGRAGRAKAKGNAVL-----FYTKKELEYKEAIEKLMNY 365

Query: 371 PAPSVEAIRE 380
             P +E   E
Sbjct: 366 EIPQLEFPEE 375


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 194/366 (53%), Gaps = 15/366 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ + + + GY   T +Q+  +   L  +D++  AQTGSGKT AF + +   LL +
Sbjct: 286 NLRSLLVDNIKKSGYQIPTPIQKHGIPIVLAGRDLMGCAQTGSGKTAAFLIPIIHNLLLK 345

Query: 66  ----NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               ND  S ++  P AL +APTRELA+Q+  E       + +   +  GG +V  + + 
Sbjct: 346 PREINDMGSLSTVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTAVGHQLKQ 405

Query: 121 LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----S 175
           +  G  ++V TPGRL D + RGK +  S ++ +VLDEAD M+D+GF  D+E ++     +
Sbjct: 406 IFYGCDLLVATPGRLKDFVGRGK-VVFSAIEYLVLDEADRMIDMGFIGDVEMVIRHETMT 464

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ LMFSAT    I  LA  +  + + V +       SDI+   + V  SD+ + +
Sbjct: 465 PPGERQTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEVKKSDKRSKL 524

Query: 236 VNILRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             IL         K  +VF   + +       L+++ F   ++ G+  Q+ER  AL   +
Sbjct: 525 KEILEEERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREEALNDFK 584

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G KG +V    ++
Sbjct: 585 SGRMCILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRIGRTGRVGNKGKAVSFYDES 644

Query: 352 MQRRAE 357
           +  R +
Sbjct: 645 IDNRIQ 650


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 194/364 (53%), Gaps = 20/364 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKD-------LQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 95  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 155 DMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV ARGID+  +
Sbjct: 275 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
            LVI+ +L    EN +HR GR+GR GRKG+++ F+   ++   R  E+ +     S+   
Sbjct: 335 SLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY-----SIKIN 389

Query: 371 PAPS 374
           P P+
Sbjct: 390 PMPA 393


>gi|296478480|gb|DAA20595.1| ATP-dependent RNA helicase DDX55 [Bos taurus]
          Length = 601

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+   L E G+  +T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLS-VLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIVEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +F  +    A+ I PTRELAVQ+   L            +  IGG +   +  R  + G 
Sbjct: 77  KFKKSQVG-AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L+ +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 198/381 (51%), Gaps = 16/381 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L      +  
Sbjct: 162 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSY-LLPGLVHVGA 220

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCI-GGVSVHRERRDLQ 122
             R      P+ L +APTRELAVQ+ +E      Y++T    + CI GG     + RDL+
Sbjct: 221 QPRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRT---RSTCIYGGAPKGPQIRDLR 277

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D + G   N+  +  +VLDEAD MLD+GF   I  I+      R+ 
Sbjct: 278 RGVEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQT 337

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR- 240
           L +SAT    + +LA+ + ++  +V I S + + +  I     +++  ++   +  +L  
Sbjct: 338 LYWSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSD 397

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  A
Sbjct: 398 LMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAA 457

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAE 357
           TDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  F    N    R   
Sbjct: 458 TDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLV 517

Query: 358 RLFREANVSVVWEPAPSVEAI 378
           ++ REA   V     P++E++
Sbjct: 518 KILREAGQVV----NPALESM 534


>gi|229163230|ref|ZP_04291185.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
 gi|228620293|gb|EEK77164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
          Length = 436

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 180/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P+
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQLITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 276 NLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDN 335

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +     + + 
Sbjct: 336 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHHLKTIH 395

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---SPKK 179
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++    +P  
Sbjct: 396 SGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTA 455

Query: 180 RRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ LMFSAT    I  LA  +  + + V + S    ++D+    + V   ++   +V  
Sbjct: 456 DRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEM 515

Query: 237 --NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              IL     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 516 CEEILINADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGV 575

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + +AT VAARG+D+  + +V++ +L    +  +HR GRTGR G +G+S+
Sbjct: 576 FNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSI 626


>gi|327485960|gb|AEA80366.1| ATP-dependent RNA helicase VCA0990 [Vibrio cholerae LMA3894-4]
          Length = 406

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 12  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 59

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 60  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 116 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 175 VMCSATFSDDLKLKAQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 235 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 294

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 295 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 340


>gi|295672568|ref|XP_002796830.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
 gi|226282202|gb|EEH37768.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb01]
          Length = 398

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVRDDMKALQEGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|291414270|ref|XP_002723386.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Oryctolagus
           cuniculus]
          Length = 600

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALQELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELA+Q+   L         +  +  IGG +   +  R  + G 
Sbjct: 77  KLKKSEVG-AIVITPTRELAIQIDEVLSHFTRHFPQLSQILWIGGRNPGEDVERFKKQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +IVV TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIVVATPGRLEDMFRRKAEGLDLASCVKALDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENSYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   Q++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVRGVQILCIHGKM-KHKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R   + + + TDV ARGID+P++  V+  +  S+    +HR GRT R G  G + VF++P
Sbjct: 315 RSLPSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 188/367 (51%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I   +    +   T++Q       L  +DV+  AQTGSGKT+A+ L  A   +  
Sbjct: 126 SFPDYILATVKRNNFKEPTAIQAQGWPMALTGRDVVGIAQTGSGKTIAYMLP-AIVHINH 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L + PTRELA QV   +   + K+  +   C+ GG     + RDL+ G
Sbjct: 185 QPFLDRGDGPICLVLCPTRELAQQVA-HVAVDFGKSSRIKNTCVYGGAPKGSQIRDLERG 243

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM
Sbjct: 244 VEICIATPGRLLDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLM 303

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHG 243
           +SAT    +  LA+++ KD ++VNI + +   +    + V V    ++D+ ++ +L    
Sbjct: 304 WSATWPKEVRGLAEDFLKDYLQVNIGALSLSANHNILQIVDVCQEHEKDDKLIRLLEEIM 363

Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +N    ++F  T+      T+ +    +  + + G+ SQ ER   L   R G A + +A
Sbjct: 364 QENENKTLIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRAGNAPILLA 423

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL 359
           TDVA+RG+D+ D++ VI+ +  S+ E+ +HR GRT R+ R G +  F    NM++  E +
Sbjct: 424 TDVASRGLDVTDIKFVINFDYPSSTEDYIHRIGRTARSERTGTAYTFFTAGNMKQAPELI 483

Query: 360 --FREAN 364
              REAN
Sbjct: 484 DVLREAN 490


>gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium
            castaneum]
          Length = 1983

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 175/326 (53%), Gaps = 7/326 (2%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +    ++L +
Sbjct: 1616 NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSI----SILQQ 1671

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 1672 ID--TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 1729

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 1730 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 1789

Query: 186  SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
            SAT+   +  + K++ ++ VR+ +  E      I    V V   D +   + ++      
Sbjct: 1790 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 1849

Query: 245  KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 1850 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 1909

Query: 305  ARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L SN EN +H
Sbjct: 1910 ARGIDVQQVSLVINYDLPSNRENYIH 1935


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 181/367 (49%), Gaps = 11/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + + ++ +
Sbjct: 272 DLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMRD 331

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                RF     P  + +APTREL  Q+  E       T V   V  GG  +    R + 
Sbjct: 332 GVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHSIRQIM 391

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD----IEFILDSSPK 178
            G +I+  TPGRL D I  + + +  ++ +VLDEAD MLD+GF  +    I F    S +
Sbjct: 392 QGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGMPSKE 451

Query: 179 KRRMLMFSATISPA-ITTLAKNYQKD--AVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +R+ LMFSAT         A  + K+     V +       SD+    + V    +   +
Sbjct: 452 QRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSKREKL 511

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+ 
Sbjct: 512 VEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKC 571

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
            V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++ F  P+    
Sbjct: 572 PVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDPEPDSH 631

Query: 355 RAERLFR 361
            A+ L +
Sbjct: 632 LAQPLVK 638


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 189/342 (55%), Gaps = 7/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   D     
Sbjct: 26  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV---DLKGGR 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               +L + PTRELA Q  ++++     T +   +  GG     +   L+    +++GTP
Sbjct: 83  VEIRSLILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPDVLIGTP 142

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FSAT    
Sbjct: 143 GRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFSATTGGA 202

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGAKNAIV 249
           A+  +     KD   + + S + Q ++   + ++ A  D  ++  +  +L       AIV
Sbjct: 203 ALRDIIGKVLKDPEHLMLNSVS-QLAEGTRQQIITADHDQHKEQIVQWLLANETFDKAIV 261

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVAARG+D
Sbjct: 262 FTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVAARGLD 321

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N
Sbjct: 322 IDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHN 363


>gi|155966195|gb|ABU41052.1| eukaryotic translation initiation factor 4A [Lepeophtheirus
           salmonis]
          Length = 413

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +A+   +    +R        AL
Sbjct: 59  GFEKPSAIQQRAIVPCIKTRDAIAQAQSGTGKTATFSIAILQKIDISMNRTQ------AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L          CIGG S+  + R L++G HIVVGTPGR+ D 
Sbjct: 113 ILAPTRELAQQIQKVVLSLGDFLKATCYACIGGRSISSDIRALEHGPHIVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   ++K  VLDEADEML  GF++ I  +     +  ++++ SAT+   +  + K
Sbjct: 173 ITREHLRTENIKMFVLDEADEMLSRGFKEQIYDVFRHLNQDIQVVLMSATMPDDVLDVTK 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  E      I    V V   + + + + ++        A++FC+TR  V
Sbjct: 233 RFMRDPIRILVRKEELTLEGILQFYVFVEKEEWKLSTLCDLYETLTITQAVIFCNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F   ++ GE+SQ+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 CWLTEKMGLKHFTCSSMHGEMSQEEREVIMREFRSGSSRVLITTDLLARGIDVQQISLVI 352

Query: 318 HAELSSNPENLLH 330
           + +L  N EN +H
Sbjct: 353 NYDLPVNKENYIH 365


>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869525|gb|EAT33750.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1029

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 193/359 (53%), Gaps = 7/359 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 381 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPPLEDG 439

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+++ + PTREL +Q+G++++  +AK+  + AVC+ GG  +  +  +L+ GA I+V T
Sbjct: 440 DGPISIIMTPTRELCMQIGKDIK-KFAKSLNLRAVCVYGGTGISEQIAELKRGAEIIVCT 498

Query: 132 PGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D +    G+  N+  +  VVLDEAD M DLGF   +  I+D+    R+ +MFSAT
Sbjct: 499 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDLGFEPQVMRIIDNIRPDRQTVMFSAT 558

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA 247
               +  LA+   K  + + I   +    D++   V++    +   ++ +L  Y    + 
Sbjct: 559 FPRQMEALARRILKKPIEIQIGGRSVVCKDVEQHVVVLEEDAKFFKLLELLGLYQELGSI 618

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG
Sbjct: 619 IVFVDKQENADILLKDLMKASYPCLSLHGGIDQFDRDSTIIDFKQGRVKLLIATSVAARG 678

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R +  + R   +S
Sbjct: 679 LDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYSGDIIRALELS 737


>gi|16197947|gb|AAL13744.1| LD21880p [Drosophila melanogaster]
          Length = 680

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 182/339 (53%), Gaps = 5/339 (1%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AF L +   +L +          +A+ +APTREL +Q+G+++   
Sbjct: 4   RDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKF 62

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVL 154
               G+      GG  +  +  +L+ GA I+V TPGR+ D +    G+  N+  +  VVL
Sbjct: 63  SKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVL 122

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD M D+GF   +  I+D+    R+ +MFSAT    +  LA+   K  + V +   + 
Sbjct: 123 DEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSV 182

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              +++   V++    +   ++ +L  Y  A + IVF   + +     + L +  +  ++
Sbjct: 183 VCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSIIVFVDKQENADILLRDLMKASYPCMS 242

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G + Q +R + +   + G+ R+ IAT VAARG+D+ DL LV++ ++ ++ E+ +HR G
Sbjct: 243 LHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCG 302

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RTGRAG+KG +   I     R A  + R  ++S    PA
Sbjct: 303 RTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPA 341


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 181/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L   D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 24  GLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNP 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ GA +V+ TP
Sbjct: 84  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 144 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L        +V
Sbjct: 204 SHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRTMV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 264 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 324 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 359


>gi|194856731|ref|XP_001968815.1| GG24297 [Drosophila erecta]
 gi|195473856|ref|XP_002089208.1| Hel25E [Drosophila yakuba]
 gi|190660682|gb|EDV57874.1| GG24297 [Drosophila erecta]
 gi|194175309|gb|EDW88920.1| Hel25E [Drosophila yakuba]
          Length = 424

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 188/350 (53%), Gaps = 13/350 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP--- 105

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             S  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L++G 
Sbjct: 106 --SDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGMAIQKDEETLKSGT 162

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVL 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +       +++L E  F  + +   ++Q+ER N  Q  +D + R+ +AT+
Sbjct: 283 EFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATN 342

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 343 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392


>gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 380

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/343 (33%), Positives = 185/343 (53%), Gaps = 15/343 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           +A++ + Y     +Q+  +   L+ KD+L  A+TGSGKT +F L +        +A N  
Sbjct: 14  KAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPILELFQRKSVARNRY 73

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAH 126
                   ALA+ PTRELAVQV    +   A     V      GGVS++ +   L++ A 
Sbjct: 74  IK------ALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMMALRD-AE 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +    L ++ +  +VLDEAD+MLDLGF +++E I D  P+ R+ ++FS
Sbjct: 127 IVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRHRQTILFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AK 245
           AT+  AI  + KN  ++ V++ +  E  Q+ D+  +      ++R   ++  L   G  K
Sbjct: 187 ATLGDAIEDINKNLLRNPVKIEVVEEE-QNLDLIKQTAYRVDAERKGPLLRYLIKEGKMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  +       L ++     A+    +Q  R++AL   + G   V +ATD+ +
Sbjct: 246 QVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLTVLVATDLIS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+  L  VI+ EL  +P++ +HR GRTGRA  +G ++ +I
Sbjct: 306 RGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLI 348


>gi|37360468|dbj|BAC98212.1| mKIAA1595 protein [Mus musculus]
          Length = 615

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 33  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 91

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 92  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 150

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 151 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 211 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 270

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 271 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 329

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 330 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 389


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/404 (30%), Positives = 203/404 (50%), Gaps = 39/404 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
             P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F   GL  AS  
Sbjct: 288 GFPAPIQNQLKKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLVHASA- 346

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLY-----------AKTGVV--V 105
                  +P   P+ L +APTRELA+Q+  E     E L             ++GV    
Sbjct: 347 ---QPPLAPGQGPIVLVLAPTRELAMQIRHECMRFTEGLALSSSAEDQEGGQRSGVRFRT 403

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           A   GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+GF
Sbjct: 404 ACVYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGF 463

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQ-HSDIDYRA 223
              +  I       R+ L++SAT    +  LA  + +   V++ +   + Q ++++  R 
Sbjct: 464 EPQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRV 523

Query: 224 VLVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            +V+ +   + ++++L+     +  ++FC T+    +  + L     + +A+ G+  Q+E
Sbjct: 524 EVVSSNQLQHRLLSVLQEDIAGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRE 583

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R   L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG KG
Sbjct: 584 RDRILHDFRKGDCEILLATDVASRGLDIHDVKFVINYDVPKNIESYIHRIGRTGRAGNKG 643

Query: 343 MSV------FVIPQ--NMQRRAERLFREANVSVVWEPAPSVEAI 378
            ++      F  P+   M R+   + R    SV  EP P +E I
Sbjct: 644 TAISFFQYDFYSPEKVTMARKICEVMR----SVGQEPPPELEKI 683


>gi|294893294|ref|XP_002774400.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879793|gb|EER06216.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 535

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 171/324 (52%), Gaps = 9/324 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+A+ L  A   +A          P+AL + PTREL+ QV      +
Sbjct: 197 RDLVGVAETGSGKTLAY-LMPAIVHIAAQPEVEQGDGPVALVLVPTRELSQQV------V 249

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               GV +A   GG    ++ R+L     ++V TPGRL D ++    N+  +  +V+DEA
Sbjct: 250 EGDEGVKIACVYGGQPKRQQERELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEA 309

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQH 216
           DEML LGF   ++ I  +    R+ LM+SAT    I  LA+ + ++  V +NI S++   
Sbjct: 310 DEMLALGFGRQLDSICSAIRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAA 369

Query: 217 SDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
                   ++  S    A+V N+L  +G   A++FC+T+  V + T++L    +  V + 
Sbjct: 370 CHQVRGEGVIGRSRLGVAVVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNAVCIH 429

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
            +  Q ER       RDG  R+ +AT++  RG+D+ +++ VI+ ++  N E  +HR GRT
Sbjct: 430 SDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRT 489

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL 359
            RAG  G S+ +      R A+ L
Sbjct: 490 ARAGAHGTSITLFTAQEGRHAKDL 513


>gi|327394851|dbj|BAK12273.1| ATP-dependent RNA helicase SrmB [Pantoea ananatis AJ13355]
          Length = 442

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/339 (33%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+GY   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T G
Sbjct: 76  PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGEH 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+    + V +      R+   I    +RA    L  +   +V++L+      +IV
Sbjct: 196 IKDFAERLLNEPVELEADPSRRERKKIQQWYHRAD--DLEHKTKLLVHLLKQPEVTRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  +      L +   +   L GE+ Q +R+ A++ + +GR  V +ATD+AARGID
Sbjct: 254 FVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  VI+ ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 314 VDDVSHVINFDMPRTADTYLHRIGRTGRAGRKGIAISLV 352


>gi|159488923|ref|XP_001702450.1| RNA helicase [Chlamydomonas reinhardtii]
 gi|158271118|gb|EDO96945.1| RNA helicase [Chlamydomonas reinhardtii]
          Length = 737

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 190/348 (54%), Gaps = 21/348 (6%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-----PASAPL 76
           +L  +Q   L P +   DV+  A+TG GKT+AF + +   ++AE    S         P+
Sbjct: 126 SLFPIQAMTLEPAMEGLDVVGRARTGCGKTLAFTVPVVERIIAEQKSGSGIGRGAGRLPV 185

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            + +APTRELA QV    + ++A TG    +  +C+ GG     + + L  G  +VVGTP
Sbjct: 186 CIVLAPTRELAKQV----QEVFANTGKAANLYTMCVYGGTPYDGQEQALSRGVDVVVGTP 241

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---RMLMFSATI 189
           GR+ D +    L +S+++  VLDE D+ML +GF +D+E IL      R   + L+FSAT+
Sbjct: 242 GRVKDLLERGTLKLSNIRFRVLDEVDQMLAMGFIEDVETILKQGENNRDQIQTLLFSATL 301

Query: 190 SPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHGAKN 246
              +  L + + +   + +++  ++R  + +  + +++  S   R   + +++  +GA  
Sbjct: 302 PKWVQGLTQRFLRPGHKFLDLVGDDRMQAAVTVKHLMLPCSYPQRAGLLKDLITSYGAGG 361

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  ++   +  + VL + L    AL G+L+Q  R   L   R GR  + IATDVAA
Sbjct: 362 RTIIFTDSKKEAAELSVVLGDSL-GAQALHGDLAQSMREQTLDGFRKGRFAILIATDVAA 420

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           RG+D+  +ELV+  +  ++ E  +HRSGRTGRAG  G+ V ++ + M+
Sbjct: 421 RGLDVTGIELVLMVDPPADWETYIHRSGRTGRAGSSGVCVTLVTKKME 468


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 178/352 (50%), Gaps = 14/352 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E ++  G+   T VQ+  +      +D++  AQTGSGKT A+ +     +L +    +
Sbjct: 213 IVENINRCGFDRPTPVQKYSIPTLTARRDLMSCAQTGSGKTGAYLIPAIHNMLVDGPPNA 272

Query: 71  PASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L+
Sbjct: 273 TSSGDYGRRKAYPVTLILSPTRELASQIHEEARKFCYNTGIRPVVVYGGADVRTQLRELE 332

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-----SSP 177
            G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++     SS 
Sbjct: 333 RGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSR 392

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+  MFSAT    I  LA+++ K+ + + +      H  I      V  + +   +  
Sbjct: 393 DGRQSAMFSATFPKEIQQLARDFLKEYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYR 452

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G   
Sbjct: 453 VLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELP 512

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +ATDVAARG+D+  + LVI+ +L +N ++ +HR GRTGRAG  G ++  +
Sbjct: 513 ILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFV 564


>gi|153801803|ref|ZP_01956389.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
 gi|124122637|gb|EAY41380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae MZO-3]
          Length = 428

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ +R  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 362


>gi|86143316|ref|ZP_01061718.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830221|gb|EAQ48681.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 175/348 (50%), Gaps = 10/348 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +QE         +DV+  AQTG+GKT A+ L +      EN +FS   
Sbjct: 16  AIEDLGFTTPTPIQEQAFGVVKSGRDVVGIAQTGTGKTFAYMLPVL-----ENLKFSKQI 70

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL +QV  ++E     + + V    GG +++ ++  +  G  I+VGTPG
Sbjct: 71  NPRVLILVPTRELVLQVVEQIEAYGKYSSIRVVGVYGGTNINTQKEAVIQGCDILVGTPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + L +  +K +++DE D MLDLGFR  +  I D  P++R+ +MFSAT++  +
Sbjct: 131 RLYDLAVSRALQLKSVKQLIIDEVDVMLDLGFRFQLVNIFDLLPQRRQNIMFSATMTDEV 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA--KNAIVFC 251
             L   +     R+ +A        I+     V        ++NIL       K  ++F 
Sbjct: 191 DELMDTFFTTPERIQVALSGTPLDAIEQHYYEVPNFYTKANLLNILLKDKKEFKKTLIFV 250

Query: 252 STRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           S +    R  K L E +F  +V  +    +Q  R NA++    G  R+ + TDV ARG+D
Sbjct: 251 SNKKLADRLFKEL-EEVFGNEVGVIHANKTQNYRINAIEQFDAGTYRILVTTDVMARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           L ++  V + ++    EN +HR GRTGRAG  G S  +   + Q R E
Sbjct: 310 LDEVTHVFNVDVPRFAENYMHRIGRTGRAGTTGKSYLLGTPDEQERKE 357


>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
 gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
          Length = 758

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 222/448 (49%), Gaps = 44/448 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S   +   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 187 NLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLERLI-- 244

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L   T V   + +GG+ V  +   L++
Sbjct: 245 ---YKPREAPVTRVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALRS 301

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  +++ TPGRL DH+      +++ ++ ++LDEAD MLD  F + ++ I+     +R+ 
Sbjct: 302 GPDVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQT 361

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           L+FSAT+S  +  LA    ++ VR+ + S    ++D+    R   V +      DR+   
Sbjct: 362 LLFSATMSEEVKDLASVSLRNPVRIFVNS----NTDVAPFLRQEFVRIRPNREGDREAVA 417

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 418 CALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQI 477

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  +    ++ +HR GRT RAG+ G SV ++ +  ++ 
Sbjct: 478 DILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKM 537

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVL-LAKHD 412
            + + ++A   V               A+ I QD +  F D I   EK++  V+ L K +
Sbjct: 538 LKEIVKKAQAPV--------------KARVIPQDVISKFRDKITKSEKEIYAVMQLEKEE 583

Query: 413 PE--------KIAAGFLRIHRAGLCAPE 432
            E         +A   L+  + G   PE
Sbjct: 584 REMQMSEAQISVAKKKLQQEKGGEAQPE 611


>gi|261212735|ref|ZP_05927019.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260837800|gb|EEX64477.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 408

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 24  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 77  RELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFD-LTQSG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 136 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDELKLKAQQLMRA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 196 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGVVATALHGDKSQTEREAALAEFKNGLTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + +  +HR GRT RAG++G+++ ++
Sbjct: 316 HAQTYVHRVGRTARAGQQGIALSLV 340


>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660268|sp|Q6CJV1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
          Length = 748

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 192/357 (53%), Gaps = 22/357 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   GY + + +Q A +   L  KD++  A TGSGKT AF + +   LL     + PA
Sbjct: 246 KGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLL-----YKPA 300

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             ++   + + PTRELA+QV   G+ +       G+   + +GG+++ ++ + L+    I
Sbjct: 301 HIASTRVVVLTPTRELAIQVADVGKNIGKFV--NGLTFGLAVGGLNLRQQEQALKTRPDI 358

Query: 128 VVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DH+R     ++  ++ +V+DEAD ML+ GF+++++ I+   P KR+ L+FS
Sbjct: 359 VIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIPSKRQTLLFS 418

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-------AIVNIL 239
           AT++  I  L     K  VR+ I    +Q +D       + +  RD+        ++  L
Sbjct: 419 ATMNSKIKQLISLSLKKPVRIMI-DPPKQAAD-KLTQEFIRIRKRDHLKPALLYQLIRKL 476

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K  +VF + + +  +   VL     QV  L G L+Q++R  ++   +  +  V I
Sbjct: 477 DNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKSLQVPVLI 536

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            TD+A+RG+D+P +E+VI+ ++    E  LHR GRT RAGR+G SV  + ++ Q R+
Sbjct: 537 CTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 593


>gi|322701035|gb|EFY92786.1| cell cycle control protein [Metarhizium acridum CQMa 102]
          Length = 397

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 189/347 (54%), Gaps = 12/347 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++         +  P      A
Sbjct: 43  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ-------KIDPTVKQCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF D I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TRFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTEKLTARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           I+ +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 336 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 382


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 310 YDKPTPVQKYAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 369

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 370 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 429

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 430 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 488

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 489 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDG 548

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 549 PEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 608

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 609 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|50302587|ref|XP_451229.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74690512|sp|Q6CXW0|DBP8_KLULA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49640360|emb|CAH02817.1| KLLA0A05203p [Kluyveromyces lactis]
          Length = 435

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 190/357 (53%), Gaps = 21/357 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+    V  T++Q+A +   L+ +D +  A TGSGKT+AF   +  T  +E+ +    
Sbjct: 17  EALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPML-TKWSEDPQ---- 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + + PTRELA+Q+  +     +   + VA+ +GG S+ ++  +LQ   H ++ TP
Sbjct: 72  -GMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATP 130

Query: 133 GRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFS 186
           GRL  H+   G +    +  +K +VLDEAD +L   F  D+   +   P   KR+ L+F+
Sbjct: 131 GRLAHHVLNSGEDTIGGLKRVKFLVLDEADILLTETFSKDLATCVSILPPKNKRQNLLFT 190

Query: 187 ATISPAITTLAKNYQKD------AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL- 239
           AT++  +  L+   Q +         V           ++   +LV    +++ +  IL 
Sbjct: 191 ATMTDQVKALSDAPQTEGKPPVFTFEVESVDNVAIPKTLETTYLLVPEHVKESYLYQILT 250

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +   + I+F +   +     + L     +V +L  ++ QQER+N++Q  R   ARV 
Sbjct: 251 SEKYVKSSCIIFVNRTVTAEILRRTLKSLDVRVTSLHSQMPQQERTNSVQRFRAQAARVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           IATDVA+RG+D+P +ELV++ ++  NP+  +HR+GRT RAGR G S+ FV  +++QR
Sbjct: 311 IATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVTEKDIQR 367


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 182/341 (53%), Gaps = 12/341 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  +    +   A
Sbjct: 162 LQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRA 221

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+Q+  E+  +  K  + V+   GG    ++   +++G   +VGTPGR
Sbjct: 222 PRVIILTPTRELAIQITNEIRSITKK--LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGR 279

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATI 189
           + D ++   L+++ LK VVLDE D M D+GF + +E IL     + P++  + L+FSAT 
Sbjct: 280 VRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSATC 339

Query: 190 SPAITTLAKNY-QKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y +K   ++++     Q   + +++ A+    S +   + ++++ Y G+ 
Sbjct: 340 PDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSH 399

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC ++                  +L G+L Q+ER   L+  R G   V IAT+VA
Sbjct: 400 GKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVA 459

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 460 ARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCI 500


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/352 (34%), Positives = 181/352 (51%), Gaps = 9/352 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E  Y   T VQ   +   L  KD+L SA TG+GK+ AF L  A   L +  R  P  
Sbjct: 17  ALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP-ALQHLDDFPRREPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  E   L   T   V    GG+S       L     IVV TPG
Sbjct: 76  ARI-LILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++  +FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +     +   +   +N     R+   I    +RA    ++ + + + +IL+   A+ +IV
Sbjct: 195 VEGFTADLLNEPAEINAEPSRRERKKITQWYHRAD--NMAHKIDLLKSILKEQ-AERSIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  ++     L         + GE++Q+ R+NA+   RDG   V IATDVAARGID
Sbjct: 252 FVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNVLIATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           LPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   ER+ R
Sbjct: 312 LPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERVGR 363


>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 445

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1165

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 186/359 (51%), Gaps = 14/359 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q   +  ++  Y   T++Q   +      +D++  A+TGSGKT+AFG+ +   +L +   
Sbjct: 532 QATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHILDQRP- 590

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HI 127
             P+  P+ L +APTREL++Q+  EL+   A +G+ +    GG  +  +   L+ G  HI
Sbjct: 591 LKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLKRGGIHI 650

Query: 128 VVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +  T GRL D I    G+ L+   +  VVLDEAD M D+GF   +  IL +    R+ ++
Sbjct: 651 LCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVRPDRQTIL 710

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT+   +  LAK   KD V + I  +++  ++I  + + V     D  I N L + G 
Sbjct: 711 FSATMPKNMHALAKKALKDPVEIIIGGKSKVAAEI-TQIISVVPPSYDKKINNTLLHLGR 769

Query: 244 ----AKNAIVFCSTR---ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                +NA V   T     +    +K+     F V  + G   Q +R+ A+   + G   
Sbjct: 770 LFDEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFKQGVLS 829

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           + IAT VAARG+D+P L +V + +  ++ E+ +HR GRTGRAG KG ++ +I    Q R
Sbjct: 830 ILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLIENPGQER 888


>gi|153832565|ref|ZP_01985232.1| DNA and RNA helicase [Vibrio harveyi HY01]
 gi|148871131|gb|EDL70009.1| DNA and RNA helicase [Vibrio harveyi HY01]
          Length = 412

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 164/325 (50%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KDVL  A TGSGKT+A+GL L        ++ S      AL + PT
Sbjct: 24  TDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLL-------EKLSVNPEQKALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   +  +    G+      GGV    + + L     I+V T GRL D +   G
Sbjct: 77  RELAIQVSEAINQVGQSIGLNAVCLCGGVDKETQLQALAANPQILVATTGRLVD-LANNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L +S++  +VLDEAD +LD+GF  D++ I   +  +R+  MFSAT S  +   AK     
Sbjct: 136 LELSNIHYLVLDEADRLLDMGFWPDVQNIAGQTSNQRQTAMFSATFSDELKGKAKQLMHA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K 
Sbjct: 196 PKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNVWAQVLVFIGAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +       L G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGITTNVLHGNKSQAEREEALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+ + ++
Sbjct: 316 HAETYVHRVGRTARAGEQGVVISLV 340


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 185/358 (51%), Gaps = 12/358 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASAPLALAI 80
           T VQ+  +   L+ +D++  AQTGSGKT AF   + + +L    +    +  + PLAL +
Sbjct: 22  TPVQKYAIPSALQGRDLMACAQTGSGKTAAFCFPIIAGILKKGLQGGHMNRKTYPLALVL 81

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           +PTRELA Q+  E      +TGV   V  GG     + R ++ G  +++ TPGRL D I 
Sbjct: 82  SPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAMERGCDLLIATPGRLIDLID 141

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTL 196
              +++S    + LDEAD MLD+GF   I  I+   D  P  +R+ ++FSAT    I  +
Sbjct: 142 RAKISLSRCVYLALDEADRMLDMGFEPQIRQIVEQRDMPPCGERQTMLFSATFPREIQRM 201

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A ++  D + + +      H+ I      V      + ++  L        +VF  T+  
Sbjct: 202 AADFLDDYIFLTVGRVGSSHALITQSVERVNSYHEKSEMLLDLVEAVPGLTLVFVETKRG 261

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +    L  +     ++ G+ +QQER  AL+  R G+  + +ATDVAARG+D+P +  V
Sbjct: 262 ADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPILVATDVAARGLDIPHVTHV 321

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQ--RRAERLFREANVSV-VW 369
           I+ +L S+ ++  HR GRTGRAG+KG   ++F+  ++ Q  R    L  EAN  V  W
Sbjct: 322 INFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDGQIARSLVDLMSEANQEVPTW 379


>gi|149278777|ref|ZP_01884912.1| ATP-independent RNA helicase [Pedobacter sp. BAL39]
 gi|149230396|gb|EDM35780.1| ATP-independent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 181/347 (52%), Gaps = 16/347 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + L +     L  +Q A L+   +  DV++ A TGSGKT+ F L +   L A     
Sbjct: 2   MVEKILEKLAITKLNDMQRASLDAAEKGGDVVLLAPTGSGKTLGFLLPVLKNLDAARKGV 61

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + P+RELA+Q+ +    +   TG  V  C GG  V  ER + +    +++
Sbjct: 62  Q------ALVLVPSRELALQIEQVFRQM--GTGFKVNCCYGGHPVRTERNNFEQPPAVLI 113

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT- 188
           GTPGR+  H+R +  + S +  +VLDE D+ L+ GF++D+ +I+      ++ ++ SAT 
Sbjct: 114 GTPGRIAYHLRHENFDESTITTLVLDEFDKALEFGFQEDMSYIIRRLLSLKQRMLTSATA 173

Query: 189 --ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
             + P  T ++     + ++++   + +   D+  + V    +D+ + +  ++   G + 
Sbjct: 174 MELIPDFTGVS-----NPIQIDFLKDQKAAPDLKLKKVTTTAADKLDTLFQLICKIGERA 228

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+ R +V R + +L +         G + Q ER  AL   R+G  R+ I TD+A+R
Sbjct: 229 TLIFCNHRETVDRISDLLIDQRLGHDIFHGGMEQDERERALLKFRNGSIRILITTDLASR 288

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           G+D+P++E +IH +L    +  LHR+GRT R   KG +  +I  + Q
Sbjct: 289 GLDIPEVECIIHYQLPYTEDAFLHRNGRTARMNAKGTAYLIIADDEQ 335


>gi|255711788|ref|XP_002552177.1| KLTH0B08998p [Lachancea thermotolerans]
 gi|238933555|emb|CAR21739.1| KLTH0B08998p [Lachancea thermotolerans]
          Length = 492

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 17/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L     L   + +F P 
Sbjct: 41  KAIDKMGFTTMTQVQSRTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIEML--HSLKFKPR 98

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V + L   +++T     + IGG +  +E   L  G ++++
Sbjct: 99  NGTGVIVITPTRELALQIFGVAKTLMEFHSQT---FGIVIGGANRRQEADKLAKGVNLLI 155

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
            TPGRL DH++  K     +LKA+V+DEAD +L++GF D++  I+   P ++R+ ++FSA
Sbjct: 156 ATPGRLLDHLQNTKDFVFKNLKALVIDEADRILEIGFEDEMRQIVKILPSEERQTMLFSA 215

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           T +  +  LA+ + +   + +N+ SE +Q S  D       + D D     + + L+ + 
Sbjct: 216 TQTTKVEDLARISLRPGPLFINVDSE-KQTSTADGLEQGYVVCDSDKRFLLLFSFLKRNQ 274

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +      + TDV
Sbjct: 275 KKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGTLVCTDV 334

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
           AARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+ F+ P  +
Sbjct: 335 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPNEL 385


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/365 (32%), Positives = 190/365 (52%), Gaps = 20/365 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDRFSPASA-- 74
           Y   T VQ+  +   L  +D++  AQTGSGKT AF L +   +L+   E  R S  +   
Sbjct: 104 YDKPTPVQKFAIPTALENRDLMACAQTGSGKTAAFLLPILHHILSGGPEMLRKSDTAPNG 163

Query: 75  -----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNGAHIV 128
                P AL +APTREL +Q+  E      +T ++  +  GG   +R++   L+ G H++
Sbjct: 164 RRRLYPAALVLAPTRELTLQIFNEACKFSYRTPIMSTILYGGRENYRDQINKLRIGCHLL 223

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK--RRMLM 184
           V TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++ S  P++  R+ +M
Sbjct: 224 VATPGRLNDVMNQGYIGLDACRFLVLDEADRMLDMGFEPQIRQIVEMSGMPRRSHRQTMM 283

Query: 185 FSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  LA+++   D V + +        +I  + V V   D+   ++++L    
Sbjct: 284 FSATFPHEIQMLAQDFLVPDYVFLAVGRVGSTSENITQKLVWVEDYDKRAFLLDLLNASS 343

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   ++F  T+   +     L+   + VVA+ G+L Q ER   L+  R G   + +AT 
Sbjct: 344 PETLTLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFEREQHLESFRSGNTPILVATA 403

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERL 359
           VAARG+D+P+++ VI+ +L S  +  +HR GRTGR G  G++        +NM R    L
Sbjct: 404 VAARGLDIPNVKHVINYDLPSEIDEYVHRIGRTGRVGNIGLATTFFNNKNKNMARDLAEL 463

Query: 360 FREAN 364
             EAN
Sbjct: 464 LVEAN 468


>gi|198285443|gb|ACH85260.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Salmo salar]
          Length = 606

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/359 (33%), Positives = 191/359 (53%), Gaps = 24/359 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + LSE G+ ++T VQ A +   +R KDV   A TGSGKT+AF + +   L+   D+  
Sbjct: 19  ITQTLSELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKTLAFVIPIIEILIKREDKLK 78

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVS-VHRERRDLQNGAHIV 128
                 AL + PTRELA+Q+   + ++L         + IGG + +    +  + GA+I+
Sbjct: 79  KMQVG-ALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGGSNPIEDVEKFKEQGANIL 137

Query: 129 VGTPGRLCDHIRGKG------LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           + TPGRL D  R K       L++  L+ +VLDEAD +LD+GF   +  IL   PK+RR 
Sbjct: 138 IATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMGFEASLNVILGYLPKQRRT 197

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN-----IASENRQHSD---IDYRAVLVALSDRDNA 234
            +FSAT +  +  L +   ++ VR+      +A+   Q +     +Y  +  A  D+ N+
Sbjct: 198 GLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPARLCNYYTICRA-EDKFNS 256

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV---ALSGELSQQERSNALQMMR 291
           +V  LR H  +  +VF ST A V  F + L E L + V    + G+++ + R+      R
Sbjct: 257 LVAFLRQHKHEKQLVFFSTCACVEYFGRAL-EALIKSVTIHCIHGKMTHK-RNKIFSEFR 314

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
             ++ + + TDV ARGID+P++  V+  +  S     +HR GRT R G +G + VF++P
Sbjct: 315 SLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTARIGNQGNAMVFLLP 373


>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
 gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 183/362 (50%), Gaps = 31/362 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 142 NLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL-- 199

Query: 66  NDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQV   +E +   T +   + +GG+S   +   L++
Sbjct: 200 ---FRPKRILAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRS 256

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ 
Sbjct: 257 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKRRQT 316

Query: 183 LMFSATISPAITTLAK---------NYQKDAVRVNIASEN----RQHSDIDYRAVLVALS 229
           ++FSAT++  +  L K         +    A R    +E     R+  +++  AVL+AL 
Sbjct: 317 MLFSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALC 376

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +               AI+F  T+ +  R   +     F+   L G L+Q +R +AL++
Sbjct: 377 SKT----------FTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDALEL 426

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R       IATDVAARG+D+  ++ VI+     +  + +HR GRT RAGR+G +V  + 
Sbjct: 427 FRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVT 486

Query: 350 QN 351
            N
Sbjct: 487 DN 488


>gi|299890889|ref|NP_001177724.1| ATP-dependent RNA helicase DDX55 isoform 2 [Mus musculus]
          Length = 596

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|319644991|ref|ZP_07999224.1| YqfR protein [Bacillus sp. BT1B_CT2]
 gi|317392800|gb|EFV73594.1| YqfR protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 178/340 (52%), Gaps = 12/340 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+   T +Q+ ++   L+ +  +  +QTG+GKT A+ L L S       R  
Sbjct: 15  IIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLLPLLS-------RID 67

Query: 71  PASAPLALAI-APTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           P    + + I APTRELA Q+ +E+    ++L     +     IGG    +    L+   
Sbjct: 68  PEKEFVQVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGTDKQKSIDKLKTQP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D IR + L++    + V+DEAD MLD+GF +D++FI    P+  +ML+F
Sbjct: 128 HLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFIGSHMPEGLQMLVF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y  +    ++  ++     I++  +     D++  ++ ++ +    
Sbjct: 188 SATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKNELLLEVMTHLNPY 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +T+ +       L +   +V  L G L+ +ER   ++ + D      IATD+AA
Sbjct: 248 LAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGDLEFTYIIATDLAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ EL  + +  +HR GRT RAG  G ++
Sbjct: 308 RGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAM 347


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/340 (35%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV      L   T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLDLGF  DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHISGETRWRKQTMLFSATLEGD 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V V+     R+   I    YRA       +   + ++L+      +I
Sbjct: 195 AIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRAD--NFEHKLELLKHLLKQDDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   R  V    ++L         L GE++Q +R   ++ + DGR  V IATDVAARGI
Sbjct: 253 VFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVNVLIATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++
Sbjct: 313 DIPDVSHVFNFDMPRSGDTYLHRIGRTGRAGRKGTAISLV 352


>gi|332976898|gb|EGK13720.1| DEAD-box ATP-dependent RNA helicase YdbR [Desmospora sp. 8437]
          Length = 291

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 10/296 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F++  +  +I + + E G+   + +Q   +   LR +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MKHFDSFELDALIMKGIREMGFEEPSPIQAECIPAVLRGEDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                   +   P S  + A+ +APTRELA+QV  EL  +     V      GG  + R+
Sbjct: 61  L-------EHVDPGSRKVKAVVLAPTRELAIQVSEELRKIGRAKRVKTLPIYGGQPIGRQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  +V+GTPGR+ DH+R   L +  ++ +VLDEADEMLD+GF DDIE ++D  P
Sbjct: 114 IKALKQGVQVVIGTPGRMLDHLRRGTLRLDDVEMLVLDEADEMLDMGFIDDIEAVMDHLP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R++L+FSATI PAI  LA+ Y      + ++        I+     V  S + +++  
Sbjct: 174 ENRQLLLFSATIPPAIRQLARKYMNKPRYITVSRGEVTAPVIEQVYYKVLESTKLDSLCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           IL     +  I+FC T+  V    + L    +    L G+L+QQ+R   +   R G
Sbjct: 234 ILDSESLEQGILFCRTKKGVDELAESLQARGYLAAGLHGDLAQQQRDRVMNSFRAG 289


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 42/388 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA------ 64
           I E +   GY   T VQ+  +   +  +D++  AQTGSGKT AF + L + +L       
Sbjct: 296 IEENIKLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINNVLQNGPEAL 355

Query: 65  ------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +N R      P AL ++PTREL++Q+  E      +T +  A+  GG   +RE+
Sbjct: 356 YRSTTQQNGRRK--QYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGGRENYREQ 413

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS- 176
              L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I  I+D S 
Sbjct: 414 INKLRLGVHILIATPGRLIDVMEQGYIGLDGCRFLVLDEADRMLDMGFEPQIRQIVDLSE 473

Query: 177 --PKKRRML-MFSATISPAITTLAK-----NYQKDAV-RVNIASENRQHSDIDYRAVLVA 227
             PK +R+  MFSAT    I  LA+     NY   AV RV   SEN     I  + V V 
Sbjct: 474 MPPKGKRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSEN-----IMQKIVWVE 528

Query: 228 LSDRDNAIVNILRYHGAKNA--------IVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
             ++ + ++++L   G K A        +VF  T+   S     L +  + VVA+ G+L 
Sbjct: 529 EHEKKSFLMDLLD-AGVKVAYSEPTALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLK 587

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q ER   L+  R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G
Sbjct: 588 QFEREKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVG 647

Query: 340 RKGMSVFVI---PQNMQRRAERLFREAN 364
             G++        +N+ R    L  EAN
Sbjct: 648 NVGLATSFFNDKNRNIARDLAELIVEAN 675


>gi|299535847|ref|ZP_07049168.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
 gi|298729047|gb|EFI69601.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
          Length = 433

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 171/340 (50%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A++  G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 8   NFQPFLQDAIANLGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 68  KQEVQ------AVITSPTRELAQQIFDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 122 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMYVF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y +  V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 182 SATIPEKLQPFLKKYMEAPVHVHMNDKRPVAEGIDFVLVPVRSKSRNKRLLEVIEGINPF 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR +       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 242 LAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLDYQYIVATDLAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++
Sbjct: 302 RGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAI 341


>gi|145596711|ref|YP_001161008.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145306048|gb|ABP56630.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 467

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 175/361 (48%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P ++   L+  G      +Q A L   L  +DVL   +TGSGKT AF LA+ + L A 
Sbjct: 21  GVPDLLNRQLAAAGVERPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVLTRLTAT 80

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P AL +APTRELA Q+   +  L     +      GGV+   +   LQ G 
Sbjct: 81  ATSRRPKR-PRALILAPTRELATQIDSVMAPLAQALSLRTMAIFGGVAARPQIAGLQAGV 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V  PGRL DH+     ++  ++  VLDEAD M DLGF   +  +L+ +P+  + L+F
Sbjct: 140 DVLVACPGRLTDHVEAGHAHLDAVEITVLDEADHMADLGFLPSVRRLLERTPRGGQRLLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +    V  ++ S     + + +  + V   DR   +V +       
Sbjct: 200 SATLDSGVDVLVRRFLTKPVVHSVDSTLSPVTAMTHHVLHVHAEDRFAVLVELTAT--PS 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+      T+ LA      V L G L+Q  R+  L+    G A   +ATD+AA
Sbjct: 258 RTVVFTRTKRGAKTLTRRLAAAGVSAVELHGNLAQGARTRNLRAFAAGEAHTLVATDIAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+HA+     +  LHRSGRT RAG  G  V ++          L R+A +
Sbjct: 318 RGIHIDDVALVVHADPPVEHKAYLHRSGRTARAGADGTVVTLMTDAQVAEVRALTRKAGI 377

Query: 366 S 366
           +
Sbjct: 378 T 378


>gi|117921368|ref|YP_870560.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613700|gb|ABK49154.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 487

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 190/358 (53%), Gaps = 25/358 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E GY+ LT VQ+ ++   L  KD++  AQTG+GKT +F L +   L  +     
Sbjct: 33  ILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVLEQLSKQ----- 87

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P   PL  AL + PTRELA+QV   ++       +      GG +++ +R+ ++ G  I+
Sbjct: 88  PNDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQGVDIL 147

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      + + ++FSAT
Sbjct: 148 VATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQTMLFSAT 207

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S A+  L+         VN+A EN   S ++     V    +   +  ++  +  +  +
Sbjct: 208 YSDAVKQLSHKMLNQPEWVNVA-ENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVL 266

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALS--------GELSQQERSNALQMMRDGRARVCIA 300
           VF S        TK  AEHL Q + L         G+ +Q  R+  L   + G+ RV +A
Sbjct: 267 VFAS--------TKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           TDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++ FV P + +  AE
Sbjct: 319 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 376


>gi|302416461|ref|XP_003006062.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
 gi|261355478|gb|EEY17906.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
          Length = 587

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 20/354 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTL 62
           N+ +   +A+   G+  +T +Q   + P L  +DVL +A+TGSGKT+AF    + + S+L
Sbjct: 116 NLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGRDVLGAAKTGSGKTLAFLIPAIEMLSSL 175

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E  
Sbjct: 176 -----RFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQT---YGIVIGGANRRAEAE 227

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L  G ++++ TPGRL DH++       +LK +++DEAD +L++GF D++  I+   P  
Sbjct: 228 KLAKGVNLIIATPGRLLDHLQNTPFVFKNLKTLIIDEADRILEIGFEDEMRQIVKILPSA 287

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---A 234
            R+  +FSAT +  +  LA+ + +   + +N+  + ++HS ++       + D D     
Sbjct: 288 DRQTSLFSATQTTKVEDLARISLRAGPLYINV-DQTKEHSTVEGLEQGYVICDEDKRFLL 346

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+ +  K  IVF S+  SV    ++L      V++L G++ QQ R+N      + +
Sbjct: 347 LFSFLKRNLKKKVIVFFSSCNSVKYHAELLNYIDLPVLSLHGKMKQQARTNTFFEFCNAK 406

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               I TDVAARG+D+P ++  +  +    P + +HR GRT RA  KG S+  +
Sbjct: 407 QGTLICTDVAARGLDIPSVDWSVSFDPPDAPTDYIHRVGRTARANAKGKSLLFL 460


>gi|255941752|ref|XP_002561645.1| Pc16g13460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586268|emb|CAP94016.1| Pc16g13460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 539

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 197/386 (51%), Gaps = 29/386 (7%)

Query: 13  EALSERGYVNLTSVQEAILN--PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +AL   G+ N+T VQ+ +L   P+ R  D LV A+TG+GKT+AF L     LL + D   
Sbjct: 11  KALDVMGFTNMTPVQQRVLTELPNWRS-DCLVQAKTGTGKTLAFLLPALHCLL-QGDSAP 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS-VHRERRDLQNGAHI 127
           P      L I PTRELA Q+ +  + L ++  T +   V +GG +      R ++    I
Sbjct: 69  PKGKVGILIITPTRELAQQIAKACDELTSQLPTPLECHVAVGGTARASAHSRFMKGAPSI 128

Query: 128 VVGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---RM 182
           +V TPGRLCD++        +S+++ +VLDEAD ML+ GF  D++ IL   P+K    + 
Sbjct: 129 LVATPGRLCDYLSETPTAKKLSNIQTLVLDEADTMLESGFIADVKRILQLIPQKSTGWQG 188

Query: 183 LMFSATISPAI-----TTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIV 236
           + FSAT+ P +       L KNY   ++     +E   H  +  Y  ++ +++D    + 
Sbjct: 189 MCFSATVPPKVKDVVNIVLKKNYT--SISTIDENEAPTHERVPQYHVLMPSVADTFTTLA 246

Query: 237 NILRYH--GAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRD 292
           ++L++    +   IVF  T   VS    V  + +   +V  +   L+Q  R+      ++
Sbjct: 247 SLLKHEIKTSSKIIVFGVTAHMVSLLAGVFCKGMVHLKVFEIHSRLNQGARTRTTNQFKE 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
             A +  A+DV  RG+D P+++LVI   L SN E  +HR GRT RAG  G ++ ++ +  
Sbjct: 307 AEAGILFASDVIGRGMDFPNVDLVIQVGLPSNGEQYVHRVGRTARAGADGRAIILLTE-- 364

Query: 353 QRRAERLFREANVSVVWEPAPSVEAI 378
               E  F + N  +  +P P  EAI
Sbjct: 365 ---GESFFMKNNRHLPIKPHPDTEAI 387


>gi|37527225|ref|NP_930569.1| ATP-dependent RNA helicase SrmB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786659|emb|CAE15723.1| ATP-dependent RNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 445

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 182/340 (53%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+++GY   T++Q A +   +  +DVL SA TG+GKT A+ L     LL    + S  
Sbjct: 17  DALNDKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAMQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  + +   A T + +A   GGV+             IVV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQAKEFAAHTHLDIATITGGVAYMNHAEIFSENQDIVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQTMLFSATLEGE 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           AI   A+   +D V ++     R+   I    YRA   A   +   + ++L+      +I
Sbjct: 195 AIRDFAERLLEDPVEIDAEPSRRERKKIQQFYYRADNSA--HKTALLCHLLKQPDVTKSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +   +   L GE+ Q +R+ A++++ DG   V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELADKLHQAGIKARFLEGEMVQAKRTEAVKLLNDGSVTVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++
Sbjct: 313 DIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLV 352


>gi|261409198|ref|YP_003245439.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261285661|gb|ACX67632.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 448

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/353 (31%), Positives = 186/353 (52%), Gaps = 6/353 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E G    + VQ   + P L  KDVL ++QTG+GKT+A+ L +   +  E         
Sbjct: 19  LAEFGIATPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQGIDPE------IKG 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L+    ++VGTPGR
Sbjct: 73  AQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLHPQLIVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  SAT+SP   
Sbjct: 133 VRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLSATVSPETA 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L K      V + I  E R  S +++   +    D+ + +  ++R++    AIVF +  
Sbjct: 193 ELVKKEMDQPVEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYNPDRAIVFVNAT 252

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             ++     L        AL G+  +  RS  L   R+GR ++ +A+DVAARG+D+  L 
Sbjct: 253 EDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVASDVAARGLDIEGLG 312

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S+
Sbjct: 313 MVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGISI 365


>gi|148687630|gb|EDL19577.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, isoform CRA_a [Mus
           musculus]
          Length = 618

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 36  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 94

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 95  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 153

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 154 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 214 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 273

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 274 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 332

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 333 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 392


>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 386

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 194/368 (52%), Gaps = 12/368 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + E L + G    T +Q   +   L  KDV+  + TGSGKT+A+ L +   +      
Sbjct: 12  QNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPIFQKIDTSKRE 71

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   A+ +APT ELA+Q+ +E++ L   +K  V     IG  +V R+   L+   H
Sbjct: 72  MQ------AIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKRQIEKLKEKPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VG+ GR+ + I+ K ++   +K +V+DE D++LD      I+ ++ ++ + R++++FS
Sbjct: 126 VIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTTMRDRQLMVFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+     +AK   KDA  +   SEN  + +I +   +    D+   +  ++     + 
Sbjct: 186 ATINEKTLNVAKGLMKDAEFIKAKSENAINPNITHMYFISDQRDKIEVLRKLVASINPEK 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +        T  L  H  +   + G  S+++R  AL+  R G+ ++ +A+D+AAR
Sbjct: 246 AIVFINKSDETEIITAKLKYHKIKAEGIHGSSSKKDRQKALEGFRSGKLQLLVASDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR-E 362
           G+D+ ++  + + +L S+P+  LHR GRT R G  G ++ ++     ++ ++ ER F+ E
Sbjct: 306 GLDIKNVSHIFNLDLPSDPKEYLHRVGRTSRTGETGTAISIVTDKELSLIKKYERDFKIE 365

Query: 363 ANVSVVWE 370
            N   +++
Sbjct: 366 INSKTIYK 373


>gi|74181724|dbj|BAE32574.1| unnamed protein product [Mus musculus]
          Length = 618

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 36  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 94

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 95  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 153

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 154 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 214 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 273

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 274 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 332

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 333 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 392


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 190/366 (51%), Gaps = 13/366 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K FE  P +I EALS + +   T +QE ++      KDV+  +QTG+GKT++F      
Sbjct: 6   FKRFELKPFLI-EALSGQRFSLPTEIQERLIPAIKNGKDVIGQSQTGTGKTLSF------ 58

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYA----KTGVVVAVCIGGVSVH 115
            LL   D+  PA   + A+  APTRELA Q+  EL+ L      +  +   + +GG   +
Sbjct: 59  -LLPILDKIDPAKEEVQAIITAPTRELASQLFDELKKLLEHCPEEEMIHAKLLVGGTDRN 117

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R    L+   HIVVGT GR+ D +  K L +     +V+DEAD+MLD+GF  D++ +   
Sbjct: 118 RAIEGLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLDMGFIADVDKVASR 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             +  +M++FSATI   +    K Y  D   V +  ++   S I++R V +   D+    
Sbjct: 178 MAEDLQMMIFSATIPEKLQPFLKKYMNDPRHVQVEPKHVTASKIEHRIVPLRNRDKLTFT 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V + +      AIVF +T+      T  + E    V  L G L  ++R   ++ +++ + 
Sbjct: 238 VELAKSINPYFAIVFTNTKEQADEVTAAMQEAGLNVECLHGGLQPRQRKQIMKQVKEVKM 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  +I+  L  + +  +HR GRT RAG  G++  +  QN Q  
Sbjct: 298 QYLVATDLAARGIDVKGVTHIINFGLPKDLDFYVHRVGRTARAGADGVAYTIFEQNDQLA 357

Query: 356 AERLFR 361
            E+L +
Sbjct: 358 VEKLLK 363


>gi|332206915|ref|XP_003252542.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX23-like [Nomascus leucogenys]
          Length = 778

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 176/350 (50%), Gaps = 29/350 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS--TLL 63
           ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    T L
Sbjct: 397 SLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 456

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 457 PKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 516

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P     
Sbjct: 517 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQK 576

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  + H
Sbjct: 577 PDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 636

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 637 ERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 696

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E
Sbjct: 697 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIE 746


>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
 gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
          Length = 407

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 183/357 (51%), Gaps = 3/357 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ + GY   T+VQ   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+QV  +   +   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +     +   +  +++  S  R+   I         ++   A++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   ER+ R
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLERVAR 363


>gi|300795358|ref|NP_001177973.1| probable ATP-dependent RNA helicase DDX43 [Mus musculus]
 gi|149259807|ref|XP_001480973.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 1
           [Mus musculus]
          Length = 646

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/365 (33%), Positives = 191/365 (52%), Gaps = 16/365 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LA 59
           F++ P+V+ E +   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 245 FQSYPEVM-ENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 303

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRER 118
           S  LA   R  P      L + PTRELA+QV  E E      G + +VC+ GG     + 
Sbjct: 304 SQPLAREQRNGPG----MLVLTPTRELALQV--EAECSKYSYGDLKSVCVYGGGDRDGQI 357

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSP 177
           +D+  G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P
Sbjct: 358 QDVSKGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRP 417

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236
             R+ +M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I 
Sbjct: 418 D-RQTIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQ 476

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             L     K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ 
Sbjct: 477 TFLENMSPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKV 536

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R 
Sbjct: 537 RILIATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRV 596

Query: 356 AERLF 360
           A  L 
Sbjct: 597 ATELI 601


>gi|109734461|gb|AAI17787.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Mus musculus]
 gi|109734859|gb|AAI17788.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Mus musculus]
          Length = 600

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|117647283|ref|NP_080685.2| ATP-dependent RNA helicase DDX55 isoform 1 [Mus musculus]
 gi|115502145|sp|Q6ZPL9|DDX55_MOUSE RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
           box protein 55
 gi|26329441|dbj|BAC28459.1| unnamed protein product [Mus musculus]
          Length = 600

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus]
 gi|76364172|sp|Q4FZF3|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 480

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 210/417 (50%), Gaps = 22/417 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     N+  ++ +V+DEAD +L+ G   F  D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--- 245
           ++  +  L      +       +  R    +D R +LV    +D  +V++++    +   
Sbjct: 189 LTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 248

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q   ++    E   +
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHAIEEQIK 368

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLAKHDPE 414
           +    +V E A  ++ + + +  R  +  + L++   DEKK ++    ++L   DP+
Sbjct: 369 QQLAELVVEEAEVLQILTQVNVVR-RECEIKLEASHFDEKKEINKRKQMILEGKDPD 424


>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
 gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
          Length = 1138

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 220/416 (52%), Gaps = 15/416 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +++ G+   T +Q   L   L  +D++  A+TGSGKTV++   L   +L + +       
Sbjct: 77  ITKLGFEKPTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPLLIHILDQRE-LEKNEG 135

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           P+ L +APTREL  QV  E +  YAK   + V   +GG + H + + L+ G  I++ TPG
Sbjct: 136 PIGLILAPTRELCQQVYTESK-RYAKIYNISVGALLGGENKHEQWKMLKAGVEILIATPG 194

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL + I+ K  N+     VV+DEAD+M  +GF   I  I+      R+ L+F+AT+   I
Sbjct: 195 RLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDRQTLLFTATLKKKI 254

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK-NAIVFC 251
             L  +  ++ V + I  EN+ + DI    ++   S+ +D  I+N L     K   ++F 
Sbjct: 255 QNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFKDQWILNNLNLCLQKGKVLIFV 314

Query: 252 STRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           +   + ++ ++++ + L+ + + L G+  Q ER++ +   +  +  + IATDVA+RG+D+
Sbjct: 315 NHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAK-NLLIATDVASRGLDI 373

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           P+++ VI+ +L  + +  +HR GRTGRAG   G +  +I  +  + A  + +   +S   
Sbjct: 374 PEIKTVINYDLPQDTDTYIHRIGRTGRAGATDGTAYSLILMSESKFASDMLKVMEISGQP 433

Query: 370 EPAPSVEAIRERD----AQRILQDPLFLDSIQG-DEKKMVDVLLAKHDPEKIAAGF 420
            P P++E +   D    AQR L   L +D  +G D  K++   L++    K   G+
Sbjct: 434 VP-PNLEEVAMNDDQFKAQR-LATKLGVDFAKGKDSSKLLKQALSRQRNTKHGLGY 487


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 180/345 (52%), Gaps = 9/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVLNKL---SEGKHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLTLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   +  A        I  +A  V   ++   I+ ++      +  I
Sbjct: 191 PAKIQQLANTILNNPSEIKPAVSKPAEKII--QAAYVCYENQKLGIIRSLFMDEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ ARGI
Sbjct: 249 VFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQ 353


>gi|289621395|emb|CBI52178.1| unnamed protein product [Sordaria macrospora]
          Length = 372

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 13/329 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E+IP    E +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++     
Sbjct: 7   LEDIP----EGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ--- 59

Query: 64  AENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +  P   A  AL +APTRELA Q+ + +  +     +    CIGG SV  + + LQ
Sbjct: 60  ----KIDPTLKACQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQ 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  +VVGTPGR+ D I+ + L    +K  VLDEADEML  GF + I  I    P+  ++
Sbjct: 116 DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQV 175

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY 241
           ++ SAT+   +  +   + ++ VR+ +  +      I    + V   + + + + ++   
Sbjct: 176 VLLSATMPQDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYET 235

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++FC+TR  V   T  L    F V A+ G++ Q +R   ++  R G +RV IAT
Sbjct: 236 VTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIAT 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLH 330
           D+ ARGID+  + LVI+ +L +N EN +H
Sbjct: 296 DLLARGIDVQQVSLVINYDLPANRENYIH 324


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 192/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY + T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 306 LPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILP-AIVHINNQ 364

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 365 QPLQRGEGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 423

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 424 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 483

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     +++ + ++L   Y 
Sbjct: 484 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYD 543

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 544 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 603

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 604 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKSL 663

Query: 360 ---FREANVSV 367
               +EAN  +
Sbjct: 664 VDVLKEANQEI 674


>gi|300778890|ref|ZP_07088748.1| ATP-dependent RNA helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504400|gb|EFK35540.1| ATP-dependent RNA helicase [Chryseobacterium gleum ATCC 35910]
          Length = 435

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 171/332 (51%), Gaps = 16/332 (4%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++  +Q++         D+++ + TGSGKT+AF   +   L              AL + 
Sbjct: 14  DMNQMQKSTYKASENNTDIVLLSPTGSGKTLAFLFPVLRNLKKN------VQGVQALILV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           P RELA+Q+ +  + +   T   V+VC GG     E  +L     +++GTPGR+  H+R 
Sbjct: 68  PARELALQIEQVFKAM--GTDFKVSVCYGGHDKKIEVNNLIEAPAVLIGTPGRVVYHLRN 125

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAK 198
              +   +K +VLDE D+ L+LGF DD+EFI +S     + ++ SAT     PA T L  
Sbjct: 126 NNFDPKTIKTLVLDEFDKALELGFHDDMEFICNSLKGLSQRILTSATTMDEIPAFTGL-- 183

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
              KD   ++   EN    D+  R V+    ++ + + N++   G K  ++FC+ R +V 
Sbjct: 184 ---KDQKVISFLKENDVKPDLQLRKVMTIPEEKLDTLFNLVCKIGNKRTLIFCNHRDAVD 240

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R +++L +         G + Q ER  AL   R+  AR+ I TD+AARG+D+P++E ++H
Sbjct: 241 RISELLHQMGIDRETFHGGMEQDERERALLKFRNDSARILITTDLAARGLDIPEVESIVH 300

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +L    +  +HR+GRT R   KG    ++ +
Sbjct: 301 YQLPPKEDAFIHRNGRTARMNAKGFVYLIMTE 332


>gi|12849752|dbj|BAB28466.1| unnamed protein product [Mus musculus]
          Length = 528

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 177/337 (52%), Gaps = 3/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S+ GY   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + D      
Sbjct: 304 AISKHGYTQPTPIQAQAVPVGLSGRDIIGIAKTGSGKTAAFLWPMLVHIM-DQDELDVGE 362

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ + +APTREL  Q+  E        G+ VA   GG S + + + LQ G  I+V TPG
Sbjct: 363 GPIGVIVAPTRELCQQIYNEATKFGRVYGLRVAAIYGGESKYEQSKVLQQGVEILVATPG 422

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL + ++ K  N+     +VLDEAD+M ++GF   +  I++     R+ L+FSAT    I
Sbjct: 423 RLIEMLKDKLTNMLRATFLVLDEADKMFNMGFEPQVRSIINRIRPDRQTLLFSATFKKRI 482

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAKNAIVFC 251
             LA++   D VR+ +      + D+   AV++   D   + +  +I+ +    + +VF 
Sbjct: 483 ERLARDVLTDPVRIVVGDVGEANQDVAQTAVILHSDDEKFSWLTSHIVEFMSTGSVLVFV 542

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A     T  L +  F+  AL G++ Q  R+  +   +     + +ATDVAARG+D+ 
Sbjct: 543 TKKAGCQLVTDKLNKAHFEASALHGDVDQNSRNTIIAKFKRKAFPILVATDVAARGLDIS 602

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  V++ +++ + +   HR GRTGRAG KG +  ++
Sbjct: 603 HIRTVVNFDVARDIDTHTHRIGRTGRAGEKGSAYTLL 639


>gi|42783412|ref|NP_980659.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42739341|gb|AAS43267.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 436

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P 
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPG 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTI 349


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 194/364 (53%), Gaps = 20/364 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKD-------LQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 95  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 155 DMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV ARGID+  +
Sbjct: 275 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
            LVI+ +L    EN +HR GR+GR GRKG+++ F+   ++   R  E+ +     S+   
Sbjct: 335 SLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY-----SIKIN 389

Query: 371 PAPS 374
           P P+
Sbjct: 390 PMPA 393


>gi|50293509|ref|XP_449166.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661072|sp|Q6FKS8|SPB4_CANGA RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|49528479|emb|CAG62136.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 197/361 (54%), Gaps = 25/361 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I +A++  G+ ++T VQ + +    + KDV+V + TGSGKT+AF + +   +++E   N 
Sbjct: 18  IKKAINVSGFDSMTPVQASTIPMFAKNKDVVVESVTGSGKTIAFVIPILEKIISEGINNS 77

Query: 68  RFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F       +L +APTREL++Q    V   LE        + +  + G +    R D   
Sbjct: 78  KFKKGHF-YSLILAPTRELSMQIQNVVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNT 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I++GTPGR+ D ++   +  S    VVLDEAD +LD+ F  D+E IL+  PK+
Sbjct: 137 LLDERPQILIGTPGRVLDFLQSPSVKTSSCGMVVLDEADRLLDVSFFKDVEKILNVLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNI 238
           RR  +FSATIS A T + K   ++ V++ + S+ +   + ++    ++   ++   +++I
Sbjct: 197 RRTGLFSATISSAGTLIFKTGLRNPVKITVNSQGKNAPTTLNLFYSVMKPEEKLQNLIHI 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFT----------KVLAEHLFQVVALSGELSQQERSNALQ 288
           +     K  IV+ ST  SV+ F           K L E L QV+++ G+L+ Q R  AL 
Sbjct: 257 MNNIRFKKCIVYFSTCVSVTFFYQYLKYLQQTDKTLREDL-QVISIHGKLTTQSRRKALS 315

Query: 289 MMRDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              +  +  + + TDVAARGID+PD++LV+  +  ++ +  LHR GRTGRA + G ++  
Sbjct: 316 TFTESLSDCILLTTDVAARGIDIPDVDLVLQIDPPTDADIFLHRCGRTGRANKIGRAIVF 375

Query: 348 I 348
           +
Sbjct: 376 L 376


>gi|28175486|gb|AAH43052.1| Ddx55 protein [Mus musculus]
          Length = 602

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 24  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 82

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 83  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 141

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 142 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 201

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 202 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 261

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 262 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 320

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 321 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 380


>gi|322706990|gb|EFY98569.1| DEAD-box helicases & Helicase superfamily domain-containing protein
           [Metarhizium anisopliae ARSEF 23]
          Length = 397

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 189/347 (54%), Gaps = 12/347 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++         +  P      A
Sbjct: 43  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ-------KIDPTVKQCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF D I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRFLKTDAMKMFVLDEADEMLSRGFTDQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TRFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTEKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           I+ +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 336 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 382


>gi|148687631|gb|EDL19578.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55, isoform CRA_b [Mus
           musculus]
          Length = 602

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 24  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 82

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 83  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 141

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 142 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 201

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 202 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 261

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 262 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 320

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 321 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 380


>gi|324504798|gb|ADY42068.1| ATP-dependent RNA helicase DDX41 [Ascaris suum]
          Length = 657

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 199/404 (49%), Gaps = 28/404 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I  +L E+  ++ T +Q   +   L  +D++  A TGSGKT+ F L L    L +
Sbjct: 221 KFPPAIIRSLREKKIISPTVIQMQGIPVVLSGRDMIGIASTGSGKTLTFALPLVMFCLEQ 280

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-------VVAVCIGGVSVHR 116
                F     P  L I P+RELA Q+   +E ++    +        V +CIGG+ +  
Sbjct: 281 EISLPFRHGEGPYGLIIVPSRELAKQIHDVIERIFESITIGSGFPRLRVGLCIGGLPIGE 340

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+GF ++I  I    
Sbjct: 341 QARVFERGVHVAVATPGRLSDLLSKKVFNLQICRYLVLDEADRMLDMGFEEEIRTIFSFF 400

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A++    A+ VN+        ++      V   ++   I+
Sbjct: 401 KGQRQTLLFSATMPRKIQNFARSALVRAIIVNVGRAGAASLNVLQEIEYVRADEKLTRIL 460

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+    +  ++F   ++ V    + L      V +L G   Q++R   +   R G   
Sbjct: 461 DCLQKTPPR-VLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFRRGEKD 519

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G+KGM+   +        
Sbjct: 520 VLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFVN------- 572

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
               R A++SV+ +    + A+     Q++   PLFL  I  D+
Sbjct: 573 ----RRADMSVLQD----LRALLLEAGQQL---PLFLRDIGADD 605


>gi|324328191|gb|ADY23451.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P 
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPG 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTI 349


>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
          Length = 561

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 203/396 (51%), Gaps = 20/396 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA- 77
           G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+     + P  AP+  
Sbjct: 2   GFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-----YKPRQAPVTR 56

Query: 78  -LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTREL +QV      L     +   + +GG+ V  +   L+    I++ TPGRL 
Sbjct: 57  VLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLI 116

Query: 137 DHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++FSAT++  +  
Sbjct: 117 DHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKD 176

Query: 196 LAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAIVNILRYHGAKNAI 248
           LA    K+ VR+ + S    ++D+    R   + +      DR+  +  +L      + +
Sbjct: 177 LASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVM 232

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+    R    L     QV  L G LSQ +R  AL+  +D +  + +ATDVAARG+
Sbjct: 233 LFTQTKKQAHRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGL 292

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + + A   V 
Sbjct: 293 DIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVK 352

Query: 369 WEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
               P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 353 ARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 388


>gi|15221724|ref|NP_176514.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75333533|sp|Q9C8S9|RH48_ARATH RecName: Full=Probable DEAD-box ATP-dependent RNA helicase 48
 gi|12324351|gb|AAG52143.1|AC022355_4 putative RNA helicase; 42376-45543 [Arabidopsis thaliana]
 gi|332195955|gb|AEE34076.1| putative DEAD-box ATP-dependent RNA helicase 48 [Arabidopsis
           thaliana]
          Length = 798

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 42/388 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +ALS  G + +T VQ+A L+  L  KD LV A+TG+GK++AF L    T+L   +     
Sbjct: 341 KALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGV 400

Query: 73  S--APL-ALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
           +  AP+ AL + PTRELA Q+  E + L     G+ V   IGG     +++ L++    I
Sbjct: 401 NKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQI 460

Query: 128 VVGTPGRLCDHIRGK-GLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++ TPGRL DHI  K GL   +  LK  ++DEAD +LDLGFR D+E I+D  P++R+ L+
Sbjct: 461 LIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLL 520

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-------------RAVLVALSDR 231
           FSATI            K+  RV+     R HS ID              ++ +VA  + 
Sbjct: 521 FSATIP-----------KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPHES 569

Query: 232 DNAIV-NILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              +V ++L+ H         IVFCST    S    +L E    V  +     Q  R+  
Sbjct: 570 HFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRV 629

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
               ++    + + +DV+ARG++ PD+ LVI   + S+ E  +HR GRTGR G+ G  + 
Sbjct: 630 SDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGEGLL 689

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPS 374
           +I        ER F +    +  EP P+
Sbjct: 690 LIAP-----WERYFLDELKDLPLEPIPA 712


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 194/373 (52%), Gaps = 12/373 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL   G+   T +Q   L   +   D++  A+TGSGKT+AF L L   LLA  
Sbjct: 197 LPLSLRSALDSLGFEAPTPIQCEALPNVMSGHDLIGIAKTGSGKTLAFLLPLFRQLLA-- 254

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +PA+  + AL + PTRELA+Q+  E         +    C GG S+ ++  +++ G 
Sbjct: 255 ---NPAAPSVRALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIKKGC 311

Query: 126 HIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            +VVGTPGR+ D +    G+ L +SH+  +VLDEAD M D+GF   +  IL  +   R+ 
Sbjct: 312 DLVVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKILKVTRPDRQT 371

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RY 241
           ++FSAT  P +  LA+    D V V + ++N  +  I  +  ++    +   ++ +L R+
Sbjct: 372 VLFSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVLARF 431

Query: 242 HGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             + +   ++F   + S       L    +  ++L G   Q +R   +   +     + +
Sbjct: 432 QSSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKSNVIDILV 491

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VA+RG+D+ DL LV++ +  ++ E+ +HR GRTGRAGR G +V  + ++ +R A  +
Sbjct: 492 ATSVASRGLDVKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQERSASDI 551

Query: 360 FREANVSVVWEPA 372
            R   +S    PA
Sbjct: 552 VRLLELSGTQPPA 564


>gi|297734151|emb|CBI15398.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 249/485 (51%), Gaps = 34/485 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+ N+T +Q   + P L  KDVL +A+TGSGKT+AF   + +  L  +  F P 
Sbjct: 17  KAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAF--LIPAVELLYHISFMPR 74

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V ++L   + +T   + + IGG +   E   L  GA+++V
Sbjct: 75  NGTGVVVICPTRELAIQTHAVAKDLLKYHTQT---LGLVIGGSARRGEAERLAKGANLLV 131

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH++  KG    +LK +++DEAD +L+  F ++++ I+   PK+R+  +FSAT
Sbjct: 132 ATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALFSAT 191

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAK 245
            +  +  LA+ ++Q   V +++     + ++  +     +V  + R   + + L+ + +K
Sbjct: 192 QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSK 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  SV   +++L       + + G+  QQ+R++           + + TDVAA
Sbjct: 252 KVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTDVAA 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQRRAERLFREA 363
           RG+D+PD++ ++  +    P+  +HR GRT R  G+KG + +F+IP+ +Q    R  + A
Sbjct: 312 RGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQ--FLRYLKAA 369

Query: 364 NVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            V V  +E      A  +   ++++ +  +L+    D  +   +    H  + I      
Sbjct: 370 KVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDI----FN 425

Query: 423 IHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +HR  L A         P ++  +S+ S   +FR  +   +   GSR+ F  S+ +    
Sbjct: 426 VHRLDLQAVASSFCFSSPPKVN-LSIDSSASKFRKKTHKVE---GSRNGFSESNPYGRQR 481

Query: 474 GSKQK 478
           G   K
Sbjct: 482 GQDDK 486


>gi|153803281|ref|ZP_01957867.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|153803543|ref|ZP_01958129.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124120924|gb|EAY39667.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
 gi|124121185|gb|EAY39928.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-3]
          Length = 406

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 12  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 59

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 60  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 116 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ +R  AL   ++G  +V IATD
Sbjct: 235 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATD 294

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 295 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 340


>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
 gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans]
          Length = 739

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 185/350 (52%), Gaps = 24/350 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPLA 77
           YV  + +Q A +   L  KD++  A TGSGKT A+ + +   LL     + PA  ++   
Sbjct: 243 YVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPIIERLL-----YKPAQIASTRV 297

Query: 78  LAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           + + PTRELA+QV   G +L       G+   + +GG+++ ++ + L++   IV+ TPGR
Sbjct: 298 IVLTPTRELAIQVSDVGAKLAKFV--NGISFGLAVGGLNLRQQEQTLRSRPDIVIATPGR 355

Query: 135 LCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P KR+ L+FSAT++  I
Sbjct: 356 LIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSKRQTLLFSATMNSKI 415

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--------GAK 245
             L     K  V++ I    +  + +    V V   D    +   L +H          K
Sbjct: 416 NQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDE---LKPALLFHLIRKLDDLSQK 472

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF + +    +   +L     +V  L G LSQ++R  A+   +  +  V I TD+A+
Sbjct: 473 RVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGFKSLQVPVLICTDLAS 532

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RG+D+P +E VI+ ++    +  LHR GRT RAGR+G S+  + ++ Q R
Sbjct: 533 RGLDIPKIEFVINYDMPKTYDIYLHRVGRTARAGREGRSISFVGESSQDR 582


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 184/353 (52%), Gaps = 28/353 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR- 68
           ++ + + + GY   T VQ+  +   +  +D++  AQTGSGKT AF + +  TLL EN R 
Sbjct: 9   ILLDNIKKSGYTKPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVVPILHTLL-ENPRD 67

Query: 69  ---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S +  P  L ++PTREL  Q+ ++ +     + +   V  GG SV   R  +  G 
Sbjct: 68  LITTSTSCEPQVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNREKIFAGC 127

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKR 180
           H++V TPGRL D I G+G + +S L+  VLDEAD MLD+GF  DIE I+D       ++R
Sbjct: 128 HVLVATPGRLLDFI-GRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETMVPAEER 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-----------DYRAVLVALS 229
           + LMFSAT    I  LA  + K+ + + +       +D+           + R +L  L 
Sbjct: 187 QTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKRKLLKELL 246

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+ + + +I      +  +VF   +         L+E  F   ++ G+  Q+ER  AL  
Sbjct: 247 DKQSQMGSI------EGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALSD 300

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G
Sbjct: 301 FKRGKMSILVATAVAARGLDIKNVAHVINFDLPKTIDEYVHRIGRTGRVGNRG 353


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 194/364 (53%), Gaps = 20/364 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKD-------LQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 95  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 155 DMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV ARGID+  +
Sbjct: 275 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
            LVI+ +L    EN +HR GR+GR GRKG+++ F+   ++   R  E+ +     S+   
Sbjct: 335 SLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY-----SIKIN 389

Query: 371 PAPS 374
           P P+
Sbjct: 390 PMPA 393


>gi|229198412|ref|ZP_04325118.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
 gi|228585112|gb|EEK43224.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
          Length = 439

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P 
Sbjct: 20  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPG 72

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 73  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 133 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 193 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQFKPYLA 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 253 VVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 313 IDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTI 352


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 191/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 283 LPDYVLKEIRRQGYKAPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILP-AIVHINNQ 341

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 342 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 400

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 401 EIVIATPGRLIDFLSAGATNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 460

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     +++ + ++L   Y 
Sbjct: 461 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYD 520

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++N    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 521 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 580

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 581 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 640

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 641 VDVLREANQEI 651


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 194/369 (52%), Gaps = 7/369 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +        
Sbjct: 386 SLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGE 444

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            PLA+ + PTRELA+Q+ + +   +   G+ V    GG  +  +  +L+ GA I+V TPG
Sbjct: 445 GPLAVIMTPTRELALQIPKGVRS-FKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPG 503

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT  
Sbjct: 504 RMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFP 563

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
            A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + + I+
Sbjct: 564 RAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVII 623

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D
Sbjct: 624 FVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLD 683

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S   
Sbjct: 684 VKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTA 743

Query: 370 EPAPSVEAI 378
            P P +E +
Sbjct: 744 VP-PDLEKL 751


>gi|30264357|ref|NP_846734.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47529804|ref|YP_021153.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187184|ref|YP_030436.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481294|ref|YP_038344.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141217|ref|YP_085615.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|65321660|ref|ZP_00394619.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118479458|ref|YP_896609.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872088|ref|ZP_02216728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634514|ref|ZP_02392834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638543|ref|ZP_02396819.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687333|ref|ZP_02878550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190566188|ref|ZP_03019107.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034885|ref|ZP_03102292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041643|ref|ZP_03108935.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046361|ref|ZP_03113587.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218905422|ref|YP_002453256.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225866267|ref|YP_002751645.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227817061|ref|YP_002817070.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228916918|ref|ZP_04080480.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929329|ref|ZP_04092354.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935605|ref|ZP_04098420.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947999|ref|ZP_04110285.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228987535|ref|ZP_04147654.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123824|ref|ZP_04253018.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|229157899|ref|ZP_04285973.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|229186526|ref|ZP_04313688.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|229604072|ref|YP_002868575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684044|ref|ZP_05147904.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721878|ref|ZP_05183667.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254736393|ref|ZP_05194099.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741430|ref|ZP_05199117.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753933|ref|ZP_05205968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254757805|ref|ZP_05209832.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|301055779|ref|YP_003793990.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus anthracis
           CI]
 gi|30259015|gb|AAP28220.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47504952|gb|AAT33628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181111|gb|AAT56487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49332850|gb|AAT63496.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974686|gb|AAU16236.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           E33L]
 gi|118418683|gb|ABK87102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712219|gb|EDR17756.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513391|gb|EDR88761.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167529966|gb|EDR92701.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170668528|gb|EDT19274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190563107|gb|EDV17073.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992424|gb|EDX56385.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022831|gb|EDX61512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196027631|gb|EDX66246.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539590|gb|ACK91988.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225787455|gb|ACO27672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005061|gb|ACP14804.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228596957|gb|EEK54615.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|228625558|gb|EEK82311.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|228659645|gb|EEL15291.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|228772267|gb|EEM20714.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811689|gb|EEM58024.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824045|gb|EEM69862.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830343|gb|EEM75955.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842742|gb|EEM87828.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268480|gb|ACQ50117.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300377948|gb|ADK06852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 436

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P 
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPG 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|315045390|ref|XP_003172070.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
 gi|311342456|gb|EFR01659.1| ATP-dependent RNA helicase ded1 [Arthroderma gypseum CBS 118893]
          Length = 689

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 164/325 (50%), Gaps = 17/325 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-------------SAPLALAIAPTR 84
           +D++  AQTGSGKT  F   + S         +P              + P +L +APTR
Sbjct: 242 RDLMACAQTGSGKTGGFLFPILSQAFQSGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTR 301

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           EL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TPGRL D I    +
Sbjct: 302 ELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI 361

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP-KKRRMLMFSATISPAITTLAKNY 200
           ++ ++K +VLDEAD MLD+GF   I  I+   D  P   R+ LMFSAT    I  LA+++
Sbjct: 362 SLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDF 421

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
            KD V +++        +I  +   V   D+ + +++IL  HGA   ++F  T+      
Sbjct: 422 LKDYVFLSVGRVGSTSENITQKVEYVEDGDKRSVLLDILHTHGAGLTLIFVETKRMADSL 481

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           ++ L    F   A+ G+ +Q+ER  AL+  R+GR  + +AT VAARG+D+P++  V+   
Sbjct: 482 SEFLINQHFPATAIHGDRTQRERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVTMT 541

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV 345
                  +   SGRT R G  G+S 
Sbjct: 542 FPPTLTTMSTESGRTVRVGNTGIST 566


>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 572

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 185/386 (47%), Gaps = 16/386 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+ P    I  AL   GY   T  Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 145 MSSFESTPFGGPIRGALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPA 204

Query: 59  ASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              LL       P    P  + +APTRELA Q+  E        G+      GG   + +
Sbjct: 205 FHALLNRPGGCKPRMGGPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQ 264

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + +Q+G  +V+ TPGRL D +    +N++++  + LDEAD MLD+GF   I  I+D+ P
Sbjct: 265 IKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMP 324

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--- 234
            KR+ L F+AT    +  LA+++  + V + +    + +++      +  + +RD     
Sbjct: 325 AKRQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKL 384

Query: 235 --IVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++  L  +  K      I+F S + +  +  +   +  F V +L G+  Q ER+  + 
Sbjct: 385 WELLTKLHENPPKADHGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMD 444

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP-ENLLHRSGRTGRAGRKGMSVFV 347
             R G  R+ +ATDVAARG+D+ D+  VI+ +   +  EN +HR GRT R    G +   
Sbjct: 445 QYRSGEVRMLVATDVAARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTF 504

Query: 348 IPQNMQRRAERL---FREANVSVVWE 370
              +  + A +L    R AN  V  E
Sbjct: 505 FTSSDAKFANKLVGVLRGANQDVPAE 530


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 184/345 (53%), Gaps = 8/345 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL +  +   T +QE  +   L+ KDVL  AQTG+GKT A+ L + S L    D   
Sbjct: 12  ILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVLSKLA---DGGY 68

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAH 126
           P  A   L ++PTRELA Q+ + ++ + Y   GV      GG   +R  ++L++   GA+
Sbjct: 69  PEDAINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQELKSLSLGAN 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGR   H+    +++S +   +LDEAD MLD+GF +DI  I  + PK  + +MFS
Sbjct: 129 LVIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLPKTCQTIMFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+    +   + +A  ++    I   A +   + +   I +I +    + 
Sbjct: 189 ATMPKKIEDLAQTLLTNPSVIKLAV-SKPAEKIHQLAYVCHETQKMGIIKDIFKAGNLQR 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  ++  V +    L +       +  +L+Q ER   +   + G+  V +ATD+ AR
Sbjct: 248 VIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQIDVLVATDILAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           GID+ D+ +VI+ ++  + E+ +HR GRT RA RKG ++  + ++
Sbjct: 308 GIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVNED 352


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 183/344 (53%), Gaps = 10/344 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST----LL 63
           P+V+G AL ++G+ N T +Q   L   +  +DV   AQTG+GKT+AF   LAST    L 
Sbjct: 18  PKVLG-ALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAF---LASTFHYLLT 73

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +    + P AL +APTRELAVQ+  + + L   TG+ + +  GG    ++ + L++
Sbjct: 74  HPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYGGDGYDKQLKVLES 133

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
           G  IV+GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R 
Sbjct: 134 GVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIRWLFRRIPAATERL 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA     +   V +    +    I       +  ++   +  +L  
Sbjct: 194 NLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIREELFYPSNEEKMRLLQTLLEE 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +AT
Sbjct: 254 EWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLDILVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 314 DVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|229821963|ref|YP_002883489.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567876|gb|ACQ81727.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 636

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 187/367 (50%), Gaps = 15/367 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  +L+ERG      +Q A L   L  +DVL   +TGSGKT+AF L + +     
Sbjct: 31  GVPGPLARSLAERGITMPFPIQTATLPDTLAGRDVLGRGRTGSGKTLAFSLPMVA----- 85

Query: 66  NDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             R +  SA     P  L +APTRELA Q+   L  L    G+   V  GGVS  R+   
Sbjct: 86  --RLAGGSAVGRARPRGLVLAPTRELATQISETLTPLAQALGLRTTVIFGGVSQGRQVTA 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L +G  I+V  PGRL D + G+GL  +  ++  VLDEAD M DLGF   ++ ILD +P+ 
Sbjct: 144 LNDGVDILVACPGRLEDLL-GQGLLTLDAVEITVLDEADHMADLGFLPGVKRILDRTPRG 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   +  L K Y  D +  ++ S +   + + +    VA +D    +V +L
Sbjct: 203 GQRMLFSATLDNGVDVLVKRYLSDPLTHSVDSASSPVARMTHHIFEVANADAKRELVELL 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G+   ++F  T+    +  + L E       L G LSQ  R   L     G  +V +
Sbjct: 263 -ASGSTRRLLFMRTKHQARKLARQLTESGIPAADLHGNLSQNARERNLAAFTSGELKVMV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGI + D++LV+H +  +  +  LHRSGRT RAG  G  V ++    +     L
Sbjct: 322 ATDIAARGIHVDDVDLVVHVDPPAEHKAYLHRSGRTARAGAGGDVVTIMLPEQRSDVRSL 381

Query: 360 FREANVS 366
            R A +S
Sbjct: 382 TRAAKIS 388


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 201/373 (53%), Gaps = 11/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +
Sbjct: 186 NLRKYVLDNVLKAGYRKPTPIQKNAIPIMMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 245

Query: 66  -NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             D  S    + P  + ++PTR L +Q+  E       + + VAV  GG +V  +  ++ 
Sbjct: 246 PKDLISENGCAQPQVIIVSPTRVLTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIA 305

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++         
Sbjct: 306 RGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETT 365

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++ N++  +
Sbjct: 366 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 425

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  + G+  + 
Sbjct: 426 IEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCIL 485

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFVIPQNMQRRA 356
           +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G  +S +   Q++   A
Sbjct: 486 VATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVA 545

Query: 357 E--RLFREANVSV 367
           +  ++ R+A+ SV
Sbjct: 546 DLSKILRQADQSV 558


>gi|171743267|ref|ZP_02919074.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455758|ref|YP_003360322.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
 gi|171278881|gb|EDT46542.1| hypothetical protein BIFDEN_02396 [Bifidobacterium dentium ATCC
           27678]
 gi|283102392|gb|ADB09498.1| ATP-dependent RNA helicase [Bifidobacterium dentium Bd1]
          Length = 704

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 176/369 (47%), Gaps = 31/369 (8%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----------------------- 62
           +Q   L   L  +DVL   +TGSGKT+AF + + + L                       
Sbjct: 52  IQADTLPDSLAGRDVLGRGRTGSGKTLAFSIPMVARLGEVDADEYENMSQFRHEVKRVQQ 111

Query: 63  -LAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             AE  R   F P   P  L +APTRELA Q+   L  L    G+      GGV   R+ 
Sbjct: 112 GHAEERRSEDFVPR--PRGLVLAPTRELANQINDVLTPLAQIYGMSTTTIYGGVRYARQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ GA IVV  PGRL D I+   L + +++  V+DEADEM D+GF   ++ +L     
Sbjct: 170 RDLQAGADIVVACPGRLEDLIQQHALTLENVQVAVIDEADEMADMGFLPPVKRLLAQVSF 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++++FSAT+   +  +   +  D    ++ S      ++ +       ++R   +  +
Sbjct: 230 DAQIMLFSATLDHGVDEVVNTFLSDPKVHSVDSATAAVDEMTHHVFETTQAERAELVRTL 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G+   I+F  T+    +  K L +       L G LSQ +R   L     G   V 
Sbjct: 290 A--SGSGRRILFTRTKFQTQKLAKDLTKRGIPAAELHGNLSQNQRDRNLAAFESGDVNVM 347

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +ELV+  E   + ++ LHRSGRT RAG+ G  V ++  N +RR  R
Sbjct: 348 VATDVAARGIDVSGVELVVQVEPPEDSKSFLHRSGRTARAGKSGDVVTIVLPNQRRRTRR 407

Query: 359 LFREANVSV 367
           L  EA + +
Sbjct: 408 LLHEAGLKI 416


>gi|302833349|ref|XP_002948238.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
 gi|300266458|gb|EFJ50645.1| hypothetical protein VOLCADRAFT_80160 [Volvox carteri f.
           nagariensis]
          Length = 836

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/337 (34%), Positives = 175/337 (51%), Gaps = 10/337 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 180 NLSRPLLKAVEALGYKTPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLERLL-- 237

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    +A   L + PTRELAVQ+   +E L   T V VA+ +GG+S+  +   L+   
Sbjct: 238 -HRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDVTVALIVGGLSLSVQAATLRKLP 296

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+R  + + +  L  +VLDEAD +L++GFRD++  ++  +PKKR+ ++
Sbjct: 297 EVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFRDEVMEVVRCAPKKRQTML 356

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV----ALSDRDNAIVNIL- 239
           FSAT S  +  L     K  VR+   +       +    V +    A + ++   V +  
Sbjct: 357 FSATFSDQVRDLVSLSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCVALCS 416

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           R   +   IVFCST+    R   +     L     L G +SQ  R  +L+  R G     
Sbjct: 417 RSFSSGRTIVFCSTKQRAHRLKILFGLAKLPPAAELHGNMSQTARLESLESFRRGDTAYL 476

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           +ATDVAARG+D+  +E+V++ +     E  LHR GRT
Sbjct: 477 LATDVAARGLDIQGVEVVVNYDAPRKLETYLHRIGRT 513


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 169/328 (51%), Gaps = 1/328 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E GY   T +Q A +   +   D++  AQTG+GKT AF L + + L A   R +
Sbjct: 12  ILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPILAKL-AGMKREA 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTREL VQ+   +        + VA   GGV  H + + L++G  +V+ 
Sbjct: 71  NQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQALRSGVDMVIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  +  + S +  +VLDEAD MLD+GF   I  I+ + P+KR+ L+FSAT+S
Sbjct: 131 TPGRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQIVKALPRKRQTLLFSATLS 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L   +Q     V I   +     +      V    +   +V++LR       +VF
Sbjct: 191 REIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHLKPALLVHLLRDPSMDMVLVF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              + S  R  + L     +   L    SQ +R  AL+  + G  RV +ATD+AARGID+
Sbjct: 251 SRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRVLVATDIAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRA 338
             +  V++ +   + E+ +HR GRTGRA
Sbjct: 311 DGISHVVNYDFPMHAEDYVHRIGRTGRA 338


>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
           stipitis CBS 6054]
 gi|146324945|sp|A3GFI4|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Pichia stipitis
           CBS 6054]
          Length = 397

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN++     +  AL
Sbjct: 42  GYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRIDENEK-----STQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  ++DEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V L D + + + ++        A++FC+TR+ V
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+  +L Q ER   ++  R G +R+ IATD+ ARGID+  + LVI
Sbjct: 276 EFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L SN EN +H
Sbjct: 336 NYDLPSNKENYIH 348


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 192/378 (50%), Gaps = 17/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ   + +  +G+   TS+Q   +   +  +DV+  A+TGSGKTVAF L +   +  + 
Sbjct: 401 LPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR 460

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S +  P+A+ ++PTRELA Q+ +E +       +  + C+GG S+  +   ++ GA 
Sbjct: 461 P-VSGSEGPIAVVLSPTRELATQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAE 519

Query: 127 IVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +V+ TPGR+ D +    G+  N+     +V+DEAD M D+GF   +  I+++     + +
Sbjct: 520 VVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPNAQKV 579

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    + +LA+      + + +   +    +ID R   V + D D     +L   G
Sbjct: 580 LFSATFPKTMESLARKILVKPLEITVGGRSVVAPEIDQR---VEVRDGDTKFTRLLEILG 636

Query: 244 AKN----------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                        A++F   + S     + L +  +   +L G   Q +R  A++  ++G
Sbjct: 637 EMGEEHKDEDDFRALIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNG 696

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + +AT VAARG+D+ +L+LVI+ +  ++ E+ +HR+GRTGRAG KG  +  I    +
Sbjct: 697 DVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQE 756

Query: 354 RRAERLFREANVSVVWEP 371
           R +  + R    S  + P
Sbjct: 757 RFSVDIVRALEASKAFIP 774


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 192/364 (52%), Gaps = 14/364 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 252 LPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLP-AIVHIGNQ 310

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                   P+AL +APTRELA Q+   + ++ +     +   CI GG S   + RDL+ G
Sbjct: 311 PPILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLERG 370

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     R+++M
Sbjct: 371 VEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVM 430

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA ++  D +++NI S +   + +I     +    ++   +V +L+   
Sbjct: 431 WSATWPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEMEKPQRMVRLLKEIA 490

Query: 241 ------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                  +     I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G+
Sbjct: 491 PTTNNAANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKDFRNGK 550

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           + + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +  F  P N +
Sbjct: 551 SNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAK 610

Query: 354 RRAE 357
           +  E
Sbjct: 611 QARE 614


>gi|126326113|ref|XP_001363225.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 668

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + S  L    +F P 
Sbjct: 189 KAIAEMGFTNMTEIQHKSIRPLLEGRDILAAAKTGSGKTLAF--LIPSIELIVKLKFMPR 246

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 247 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 306

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 307 GRLLDHMQNTPGFMFKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTR 366

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LAK + +K+ + V +  +++  + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 367 KVEDLAKISLKKEPLYVGV-DDDKDTATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 425

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 426 MVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 485

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 486 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 532


>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
           DSM 18315]
          Length = 372

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 164/293 (55%), Gaps = 5/293 (1%)

Query: 71  PASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           PA+A  A+ +APTRELA Q+ +++E   +    + V V     G++  +++R ++ GA I
Sbjct: 15  PANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGMEMGADI 74

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL  HI+   +++S +   +LDEAD MLD+GF DDI  +    P+  + +MFSA
Sbjct: 75  VIATPGRLLSHIKLGTVDLSQVSFFILDEADRMLDMGFYDDIMQVYKLLPETCQTIMFSA 134

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+ P I TLA+   K+   V IA  +R    I   A +     +   + ++      +  
Sbjct: 135 TMPPKIRTLAQTILKNPEEVKIAI-SRPPETIMQTAYVCYDMQKLRILEDLFSQSRPQRV 193

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F S++  V      L    F V A+  +L Q +R   ++  ++GR  + +ATDV +RG
Sbjct: 194 IIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRG 253

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           ID+ D++LVI+ ++  +PE+ +HR GRT R    +G+++  I    Q + +R+
Sbjct: 254 IDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQFKRI 306


>gi|242084812|ref|XP_002442831.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
 gi|241943524|gb|EES16669.1| hypothetical protein SORBIDRAFT_08g003560 [Sorghum bicolor]
          Length = 531

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/324 (33%), Positives = 176/324 (54%), Gaps = 26/324 (8%)

Query: 31  LNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAV 88
           LN DL  +  D++  AQTGSGKT AF L +   LL     F       A  ++PTRELA+
Sbjct: 146 LNLDLTCEGMDLIALAQTGSGKTAAFALPILQALLEHRRPF------FACVLSPTRELAI 199

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNIS 147
           Q+  + E L +  G+V +V +GGV   ++   L    HI+V TPGRL DH+   KG +++
Sbjct: 200 QIAEQFEALGSAIGLVCSVLVGGVDRMQQVISLARHPHIIVATPGRLLDHLTDTKGFSLN 259

Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRV 207
            +K +VLDEAD +LD+ F   +  IL   PK+RR  +FSAT++  +    K    D +R 
Sbjct: 260 KIKYLVLDEADVLLDMEFEKSLNDILKVIPKERRTFLFSATMTDKLKVSCKYSTVDTLRE 319

Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
                            LV  +D+D  +V +L        ++F  T  S SR   ++  +
Sbjct: 320 EF--------------YLVPANDKDCCLVYVLNKIPGSMIMIFTETCYS-SRLLALMLRN 364

Query: 268 L-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           L F+ + ++G++SQ +R  AL   +     +   TDVA+RG+D+  +++VI+ ++ S  +
Sbjct: 365 LGFEAIFINGKMSQDKRLGALNRFKSKGCNIITCTDVASRGLDIQGVDVVINYDIPS-LK 423

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQ 350
           + +HR GRT RAG+ G ++ ++ Q
Sbjct: 424 SYVHRVGRTARAGQSGYALSLVNQ 447


>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 439

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 181/349 (51%), Gaps = 15/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++ +AL ++GY   T++Q   +   +  +DVL SA TG+GKT AF L     LL
Sbjct: 9   FDLSPELL-KALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQHLL 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P   P  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 68  -DYPRRKPGP-PRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNT 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 126 NQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 185

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     D VRV+     R+   I+   Y A        ++ I  + 
Sbjct: 186 LFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHA-----DSNEHKIKLLA 240

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           R+         IVF   R      ++ L +   +   L G+++Q +R+NA+  ++ G   
Sbjct: 241 RFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 301 VLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAV 349


>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 546

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 181/339 (53%), Gaps = 8/339 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V   A+  +GY   T +Q   + P L  +DV+  A+TGSGKT AF + + S L   +
Sbjct: 93  LPDVF-RAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVLSKLRTHS 151

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +    + +APTRELA+Q  +  + L   T + VA  +GG S+  +  DL N   
Sbjct: 152 LK----AGARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADLSNNPD 207

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL  HI   K   +  +  VVLDEAD +L++GF D ++ I++S    R+ L+F
Sbjct: 208 VIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVADVRQTLLF 267

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  A+    +   ++   V + +E +  SD+    VL+   ++  A++ +LR    K
Sbjct: 268 SATLPSALAEFVRVGLREPEVVRLDAEMKISSDLRMSFVLMRSDEKVAALLYMLREVIPK 327

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF STR  V     VL     +V ++ G +    R  AL   R  +A V + TDV
Sbjct: 328 RQQTVVFASTRHHVEWLQNVLEFEGVKVSSIYGSMDMMARKMALGRFRAKKADVLVVTDV 387

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           AARGID+P L+ VI+ +  +  +  +HR GR  RAGR G
Sbjct: 388 AARGIDIPLLDNVINYDFPAKGKLFVHRVGRVARAGRTG 426


>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 448

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 194/359 (54%), Gaps = 14/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 13  KAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 66

Query: 73  SAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              ++   L + PTRELA Q  +E+E     T +   +  GG     +   L+    I++
Sbjct: 67  KVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILI 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D++ ++D    +++ ++FSAT 
Sbjct: 127 GTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLFSATT 186

Query: 190 S-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNA 247
               +  +      +   + + + ++ +S    + +    +     IVN +L     + A
Sbjct: 187 GGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLANETYEKA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +TRA   R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATDVAARG
Sbjct: 247 IVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           +D+  L++VI+ ++  + +  +HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 307 LDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLKQS 365


>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 445

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/355 (32%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|306823202|ref|ZP_07456578.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|309801655|ref|ZP_07695776.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304553834|gb|EFM41745.1| ATP-dependent RNA helicase [Bifidobacterium dentium ATCC 27679]
 gi|308221787|gb|EFO78078.1| DEAD/DEAH box helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 704

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 176/369 (47%), Gaps = 31/369 (8%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----------------------- 62
           +Q   L   L  +DVL   +TGSGKT+AF + + + L                       
Sbjct: 52  IQADTLPDSLAGRDVLGRGRTGSGKTLAFSIPMVARLGEVDADEYENMSQFRHEVKRVQQ 111

Query: 63  -LAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             AE  R   F P   P  L +APTRELA Q+   L  L    G+      GGV   R+ 
Sbjct: 112 GHAEERRSEDFVPR--PRGLVLAPTRELANQINDVLTPLAQIYGMSTTTIYGGVRYARQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ GA IVV  PGRL D I+   L + +++  V+DEADEM D+GF   ++ +L     
Sbjct: 170 RDLQAGADIVVACPGRLEDLIQQHALTLENVQVAVIDEADEMADMGFLPPVKRLLAQVSF 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++++FSAT+   +  +   +  D    ++ S      ++ +       ++R   +  +
Sbjct: 230 DAQIMLFSATLDHGVDEVVNTFLSDPKVHSVDSATAAVDEMTHHVFETTQAERAELVRTL 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G+   I+F  T+    +  K L +       L G LSQ +R   L     G   V 
Sbjct: 290 A--SGSGRRILFTRTKFQTQKLAKDLTKRGIPAAELHGNLSQNQRDRNLAAFESGDVNVM 347

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +ELV+  E   + ++ LHRSGRT RAG+ G  V ++  N +RR  R
Sbjct: 348 VATDVAARGIDVSGVELVVQVEPPEDSKSFLHRSGRTARAGKSGDVVTIVLPNQRRRTRR 407

Query: 359 LFREANVSV 367
           L  EA + +
Sbjct: 408 LLHEAGLKI 416


>gi|255037844|ref|YP_003088465.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254950600|gb|ACT95300.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 445

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 196/403 (48%), Gaps = 36/403 (8%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +QE  +   L  +D+L  AQTG+GKT A+ L L   +     +++   
Sbjct: 20  AIEEAGYTEPTPIQEQAIPVALAGQDILGIAQTGTGKTAAYTLPLLMRI-----KYAQGQ 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELA+Q+   +  L   T +   V  GGV    +   ++ G  I+V TPG
Sbjct: 75  HPRALILAPTRELAMQISEAIAQLSKYTDIRTVVLYGGVGPKTQIEAIRKGVDIIVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D    + + + HL  +VLDEAD+M+D+GF   I  +L+  P+KR+ ++FSAT S  +
Sbjct: 135 RFMDLYFQEEIVVKHLNVMVLDEADKMMDMGFMPQIRKLLEVIPRKRQNMLFSATFSGKV 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAI 248
             L+  + +   R+ +  +      +    VL  + +    I N+L Y           +
Sbjct: 195 ENLSYEFLEFPTRIEVTPQATAAEMVT--QVLYEVPNFRTKI-NLLSYLLEDKEALTRVL 251

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGEL-------SQQERSNALQMMRDGRARVCIAT 301
           VF  +R        ++ ++L   V    EL        Q  R NA++  R+G  RV +AT
Sbjct: 252 VFTRSREVAG----LVHQNLLNRVVPEAELRVIHANKGQNTRINAMEAFREGNVRVMVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAER 358
           DV ARGID+ ++  V++ ++    E+ +HR GRTGRA   G ++  +    +   R+ E 
Sbjct: 308 DVVARGIDITEVSHVVNFDVPLIYEDYVHRIGRTGRANNVGNAITFMTIADEYHIRKIEA 367

Query: 359 LFR------EANVSVVWEPAPSVE---AIRERDAQRILQDPLF 392
           + R      E    V     P  E    +RE D QR  +DP F
Sbjct: 368 MIRMEIPRAEFPDDVYIAETPFQERQDMLREIDNQRRKEDPTF 410


>gi|217961776|ref|YP_002340346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222097732|ref|YP_002531789.1| ATP-dependent RNA helicase, dead/deah box family [Bacillus cereus
           Q1]
 gi|229141022|ref|ZP_04269565.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
 gi|217063251|gb|ACJ77501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221241790|gb|ACM14500.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           Q1]
 gi|228642455|gb|EEK98743.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
          Length = 436

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +P 
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINPG 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTI 349


>gi|145530157|ref|XP_001450856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418489|emb|CAK83459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 696

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 194/364 (53%), Gaps = 21/364 (5%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P       AL +R ++ +T +Q  ++   L E+D+L +++TGSGKT+++ L L   
Sbjct: 58  FEDLPISTNTLRALKQRKFIKMTEIQRCVIPHALAERDILGASKTGSGKTLSYLLPLIEN 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    ++++P     AL I PTRELA+QV    + L     + +A+ IGG +   ER D 
Sbjct: 118 LYV--NKWTPLDGLGALIILPTRELAMQVFEVFKSLNTYHILSMALLIGGKNYQYER-DR 174

Query: 122 QNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL  H     G + ++LK +VLDEAD ML+LGF   ++ I++  PK++
Sbjct: 175 ITGMNVIICTPGRLLQHFEESPGFDANNLKVLVLDEADMMLELGFWGPLKAIMNYLPKEK 234

Query: 181 RMLMFSATISPAITTLAK----NYQKDAVRVNIASENRQHSD--------IDYRAVLVAL 228
           + ++FSAT++  I  L K    N +   +   +A+++ + +D        +    ++  +
Sbjct: 235 QTMLFSATLNQTIHQLCKISLQNPESIFLHEKLATDSNEQTDNVMSTPNKLQQFYIVTPI 294

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNA 286
            ++ + + + ++ H  +  ++F ST   V    +V  +    ++   L G   Q +R+  
Sbjct: 295 EEKIDVLFSFIKSHNKQKIVIFVSTCKQVRYLFEVFRKLKLGMLLYELHGRQKQDKRTAI 354

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-V 345
                + +A     T++A+RG+D P ++ VI  +   +P   +HR GRT R    G S +
Sbjct: 355 FFTFSEKKAAALFTTNIASRGLDFPKVDWVIQFDCPDDPSTYVHRVGRTARYIAGGFSML 414

Query: 346 FVIP 349
           F++P
Sbjct: 415 FLLP 418


>gi|325287732|ref|YP_004263522.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323186|gb|ADY30651.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 436

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 175/323 (54%), Gaps = 14/323 (4%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIA 81
           L  +QE  L+      + ++ + TG+GKT+AF L L        DR +P    + AL + 
Sbjct: 20  LNPMQEEALSVIENTTNTVLLSPTGTGKTLAFLLPLI-------DRLNPDLEEIQALILV 72

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           P+RELA+Q+ + +  +   +G  V    GG S+ +++ +L++   I++GTPGR+ DH   
Sbjct: 73  PSRELAIQIEQVIRSM--GSGYKVNAVYGGRSMSKDKIELKHTPAILIGTPGRIADHFDN 130

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           +  + + +K +VLDE D+ L+ GF + +++I+   P   R ++ SAT    I    +   
Sbjct: 131 ERFSTNFIKTLVLDEFDKSLETGFEEQMKYIIGLLPSLNRRILTSATQGVTIPKFVR--L 188

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
             AV +N   E    + +  + V+    D+   ++N+L Y G    I+FC+ R S+   +
Sbjct: 189 DKAVTINFLKETT--NKLAVKTVVSPNRDKLRTLLNLLNYEGNSPGIIFCNLRESIKGVS 246

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K L ++        G++ Q++R  +L   R+G   V +ATD+AARGID+P+++ +IH EL
Sbjct: 247 KFLDKNNITHGCFHGDMEQKDRERSLLKFRNGTYDVIVATDLAARGIDIPEMKYIIHYEL 306

Query: 322 SSNPENLLHRSGRTGRAGRKGMS 344
               E  +HR+GRT R   KG +
Sbjct: 307 PYKKEEFIHRNGRTARVNSKGTA 329


>gi|330934418|ref|XP_003304540.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
 gi|311318781|gb|EFQ87363.1| hypothetical protein PTT_17169 [Pyrenophora teres f. teres 0-1]
          Length = 1166

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 185/359 (51%), Gaps = 14/359 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q   +  ++  Y   T++Q   +      +D++  A+TGSGKT+AFG+ +   +L +   
Sbjct: 533 QATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHILDQRP- 591

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HI 127
             P+  P+ L +APTREL++Q+  EL+   A +G+ +    GG  +  +   L+ G  HI
Sbjct: 592 LKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGGQPISEQIAMLKRGGIHI 651

Query: 128 VVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +  T GRL D I    G+ L+   +  VVLDEAD M D+GF   +  IL +    R+ ++
Sbjct: 652 LCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEPQVMKILANVRPDRQTIL 711

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  LAK   KD V + I  +++  ++I  + + V     D  I   L + G 
Sbjct: 712 FSATMPKNMHALAKKALKDPVEITIGGKSKVAAEI-TQIISVVPPSYDKKINKTLLHLGQ 770

Query: 245 -----KNAIVFCSTR---ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                +NA V   T     +    +K+     F V  + G   Q +R+ A+   + G   
Sbjct: 771 LFAEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDFKQGVLS 830

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           + IAT VAARG+D+P L +V + +  ++ E+ +HR GRTGRAG KG ++ +I    Q R
Sbjct: 831 ILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGNKGTAITLIENPGQER 889


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/398 (32%), Positives = 208/398 (52%), Gaps = 44/398 (11%)

Query: 5   ENIPQVIG------------EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKT 51
           +++PQ IG            + +   GY   T VQ+  + P L+  +D++  AQTGSGKT
Sbjct: 220 DDVPQPIGLFSDLSLHEWIEDNIKTAGYDRPTPVQKYSI-PALQSGRDLMSCAQTGSGKT 278

Query: 52  VAFGLALASTLLAEN----DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKT 101
            AF + L +++L +      R   +S       P AL ++PTREL++Q+  E      +T
Sbjct: 279 AAFLVPLVNSILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIYNESRKFAYRT 338

Query: 102 GVVVAVCIGGVSVHRER-RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
            +  A+  GG   ++++   L+ G HI++ TPGRL D +    + +   + +VLDEAD M
Sbjct: 339 PITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGLEGCRYLVLDEADRM 398

Query: 161 LDLGFRDDIEFILDSS---PKKRRML-MFSATISPAITTLAKNYQKDAV------RVNIA 210
           LD+GF   I  I++ +   PK+ R+  MFSAT    I  LA+++ K         RV   
Sbjct: 399 LDMGFEPQIRQIVEFNRMPPKEERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGST 458

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLF 269
           SEN     I  + V V   ++ + ++++L   G  +  +VF  T+   S     L+   +
Sbjct: 459 SEN-----IMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLSRQNY 513

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           QVV + G+L Q ER   L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +
Sbjct: 514 QVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYV 573

Query: 330 HRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREAN 364
           HR GRTGR G  G++        +N+ R    L  EAN
Sbjct: 574 HRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEAN 611


>gi|153837953|ref|ZP_01990620.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|260902800|ref|ZP_05911195.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149748644|gb|EDM59503.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308108629|gb|EFO46169.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 411

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++  GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +     ++
Sbjct: 189 SNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P +      
Sbjct: 311 YDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYEHGMSAPPQNNRQYSR 370

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 371 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 430

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 431 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 489

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 490 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLSSIRDG 549

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 550 PEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPIL 609

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 610 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 656


>gi|154685222|ref|YP_001420383.1| Yfml [Bacillus amyloliquefaciens FZB42]
 gi|154351073|gb|ABS73152.1| Yfml [Bacillus amyloliquefaciens FZB42]
          Length = 376

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 192/358 (53%), Gaps = 10/358 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+   T +QE      +  KDV+  + TG+GKT+A+ L +        +R +
Sbjct: 15  IAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVL-------ERIN 67

Query: 71  PASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P    P  + +AP+REL +Q+ + ++     + +     IGG +V ++   L+N  HI+ 
Sbjct: 68  PEQKHPQVIILAPSRELVMQIFQVIQDWIKGSDLRALSLIGGANVKKQVEKLKNKPHIIA 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ K R++L FSAT+
Sbjct: 128 GTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTQEHRETMKKIIKTTLKDRQLLSFSATL 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P    +      +   + +     + + + ++ ++    D+   +  + R +G + A+V
Sbjct: 188 QPETEQVLNTIAHEPAVLKVKRNTAEKARVTHQYLVCDQRDKVKLLQKLSRLNGMQ-ALV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F     ++S + + LA H   +  L GE  + ER+  L     G   + +ATD+AARG+D
Sbjct: 247 FVRDIGNLSVYAEKLAYHHVDLGILHGEAKKMERAKILSAFERGEFPLLLATDIAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           + DL  VIHA++  N +  +HRSGRTGRAG++G  + ++    + + +++ +   +++
Sbjct: 307 IDDLPYVIHADI-PNEDGYIHRSGRTGRAGKEGTVLSLVTPMEESKLKKMAKSLGIAL 363


>gi|28897677|ref|NP_797282.1| RhlE protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364553|ref|ZP_05777162.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260876480|ref|ZP_05888835.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895848|ref|ZP_05904344.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28805890|dbj|BAC59166.1| RhlE [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086771|gb|EFO36466.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092804|gb|EFO42499.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308115381|gb|EFO52921.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328473340|gb|EGF44188.1| RhlE protein [Vibrio parahaemolyticus 10329]
          Length = 411

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++  GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +     ++
Sbjct: 189 SNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|153824721|ref|ZP_01977388.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
 gi|149741677|gb|EDM55706.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae MZO-2]
          Length = 406

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 178/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 12  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 59

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 60  ----ERLKTSPEQQALVLVPTRELAMQVSDVLTHVGTPLGLNTLCLCGGVDKAEQQNALA 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL+++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 116 ENPNILVATTGRLFD-LTQSGLSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQT 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ +R  AL   ++G  +V IATD
Sbjct: 235 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQTQREAALAEFKNGTTQVLIATD 294

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 295 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 340


>gi|261337257|ref|ZP_05965141.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
 gi|270277617|gb|EFA23471.1| ATP-dependent RNA helicase [Bifidobacterium gallicum DSM 20093]
          Length = 662

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 173/367 (47%), Gaps = 29/367 (7%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----------- 74
           +Q   L   L  +DVL   +TGSGKT+AF + L + L   +  F    +           
Sbjct: 53  IQRDTLPDSLSGRDVLGRGRTGSGKTLAFSIPLVARLGEVDGSFGAEDSMAEFRKAVKQV 112

Query: 75  ----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                           P  L +APTRELA Q+   LE L    G+      GGV   R+ 
Sbjct: 113 QKRHRAERMEAGFVPHPRGLVLAPTRELANQINDVLEPLANIYGISTTTVYGGVRYSRQI 172

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ GA IVV  PGRL D +    L +  ++ V++DEADEM D+GF   I+ +L     
Sbjct: 173 GDLKAGADIVVACPGRLEDLLEQGALTLDAVQIVIIDEADEMADMGFLPPIKRLLSQIRP 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  +   +  D +  ++   N     + +   +++ SD+   +  +
Sbjct: 233 NAQHMLFSATLDHGVDAVVNEFLHDPIVHSVDEANAHVDSMTHHVFVISRSDKPELVRAL 292

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G    I+F  T+    +  K L +       L G LSQ +R   L     G   V 
Sbjct: 293 --ASGTGRRILFTRTKFQAKKLAKSLTQQGIPAAELHGNLSQNQRDRNLAAFEQGNVNVL 350

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  ++LV+  +   +P+  LHRSGRT RAGR+G  + ++  + +R  + 
Sbjct: 351 VATDVAARGIDVSGVDLVVQVDPPEDPKAFLHRSGRTARAGREGDVITIMTPDQRRYVKS 410

Query: 359 LFREANV 365
           L   AN+
Sbjct: 411 LLHRANI 417


>gi|169234830|ref|NP_001108495.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Rattus norvegicus]
 gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus]
          Length = 480

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     N+  ++ +VLDEAD +L+ G   F  D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--- 245
           ++  +  L              +  R    +D R +LV    +D  +V++++    +   
Sbjct: 189 LTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLED 248

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 CSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
          Length = 626

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 184/345 (53%), Gaps = 6/345 (1%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AF L +   ++ +         P+A+ + PTRELA+Q+ +E +  
Sbjct: 4   RDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGEGPIAVIMTPTRELALQITKECKKF 62

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVL 154
               G+ V    GG  +  +  +L+ GA I+V TPGR+ D +    G+  N+  +  VVL
Sbjct: 63  SKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVL 122

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD M D+GF   +  I+D+    R+ +MFSAT   A+  LA+      + V +   + 
Sbjct: 123 DEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSV 182

Query: 215 QHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             SD++ + +++    +   ++ +L  Y  + + I+F   +       K L    +  ++
Sbjct: 183 VCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMS 242

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G + Q +R + +   ++G  ++ +AT VAARG+D+  L LV++    ++ E+ +HR+G
Sbjct: 243 LHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAG 302

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           RTGRAG KG +   I ++  R A  + +   +S    P P +E +
Sbjct: 303 RTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVP-PDLEKL 346


>gi|316968668|gb|EFV52921.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 755

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/395 (30%), Positives = 214/395 (54%), Gaps = 21/395 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T +Q   +   L  +DV+ +A+TGSGKT+AF L  A  LL +  RF P 
Sbjct: 305 KAIRDMGFETMTEIQAQTIPSLLEGRDVMGAAKTGSGKTLAF-LVPAVELLYKL-RFLPR 362

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L  L     +   + IGG +   E   L  G  I+V TP
Sbjct: 363 NGTGCIVISPTRELSMQTYGVLIELLKYHSITHGLVIGGANRKIEAAKLSTGICILVATP 422

Query: 133 GRLCDHIRGKGLNIS-----HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           GRL DH+R  GLN +     +L+ +++DEAD +L++GF  +++ I+   PK+R+ ++FSA
Sbjct: 423 GRLLDHLRVSGLNTTEFTYKNLQCLIIDEADRILEIGFELEMQQIIRLLPKQRQTMLFSA 482

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRA--VLVALSDRDNAIVNILRYHGA 244
           T +  I  LAK   +K+ + V IAS   Q +    R    +  + +R + +   LR +  
Sbjct: 483 TQTAKIEDLAKLALKKEPLFVGIASNVEQATVEGLRQGYAVCPIENRFSLLYTFLRKNKK 542

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF S+ ASV   + +L      V ++ G+  QQ+R++        +A   + TDVA
Sbjct: 543 KKVMVFFSSCASVKYHSDLLNYIEVPVASIHGKQKQQKRTSTFFSFIKAQAGTLLCTDVA 602

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFREA 363
           ARG+D+P ++ ++  +   +P + +HR GRT R  G +G ++ ++ Q  + +     ++A
Sbjct: 603 ARGLDIPKVDWIVQYDPPDDPTDYIHRVGRTARGEGGQGNALLIL-QPSELKFLYYLKQA 661

Query: 364 NVSVV-----WEPAPSVEAIRERDAQRILQDPLFL 393
            + V+     W+   +V    ++  +++L+  ++L
Sbjct: 662 KIPVLEYECSWDKVANV----QKQLEKLLKSNVYL 692


>gi|300773838|ref|ZP_07083707.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760009|gb|EFK56836.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 434

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 196/367 (53%), Gaps = 20/367 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I   LS     +L  +Q  +++    ++D+++ + TG+GKT+AF       LLA +  F 
Sbjct: 3   IEAILSRMNISSLNEMQSEVVSSLKLKQDIILLSPTGTGKTLAF-------LLAASYSFD 55

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    P  L +APTRELA Q+    + ++   G  V  C GG S   ER  L++   I++
Sbjct: 56  TTKKGPQCLVLAPTRELAQQIESVSKKVFH--GKRVVCCYGGHSTREERTALKHAPDIII 113

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+  H+R + L+ + L +++LDE D+ L+ GF++D+ FI+D  P  ++ ++ SAT 
Sbjct: 114 GTPGRIAYHLRSENLDTAQLHSLILDEFDKSLEFGFQEDMSFIIDQLPVLKQHILTSATQ 173

Query: 190 S---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
               P+ T ++     +A+ ++    +    D+  + V+    ++   + N++   G K 
Sbjct: 174 MEEIPSFTGIS-----NALTIDYLDNSDAAPDLTIKKVICRPKEKLRTLFNLICQIGNKR 228

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+ R +V   +++L +      A  G + Q +R   L   R+G +++ I TD+AAR
Sbjct: 229 MLIFCNHRDAVDHISELLMDRELIHDAFHGGMEQADRELTLLKFRNGTSQILITTDLAAR 288

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++ +IH +L    +  +HR+GRT R    G +V+VI    +  A  L  E    
Sbjct: 289 GLDIPEIDSIIHYQLPYKEDAFVHRNGRTARMKAAG-NVYVILTTDENYA-YLPDEIEEE 346

Query: 367 VVWEPAP 373
           +V E  P
Sbjct: 347 IVTEDHP 353


>gi|149757285|ref|XP_001503455.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1
           [Equus caballus]
          Length = 483

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +VLDEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSSTFSIKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +  R    +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHQD 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|254229918|ref|ZP_04923321.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394827|ref|YP_003286681.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151937554|gb|EDN56409.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262338421|gb|ACY52216.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 402

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   + IA  +   S+I      V    + + + ++L+ +     +V
Sbjct: 189 SNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLKENDWSQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|304410338|ref|ZP_07391957.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301951|ref|ZP_07581709.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351747|gb|EFM16146.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913989|gb|EFN44410.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 443

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 9/338 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE------NDRFSPAS 73
            V+ T VQ+  +   L  +D+L  AQTGSGKT+AFGL L   LL +        +  P S
Sbjct: 32  LVHPTKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLLQQLLLQQQTQLQGTKSVPPS 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             LAL + PTRELA+QV   L+ + ++    + + +  GGV +  +  +L     ++V T
Sbjct: 92  NALALVLVPTRELALQVTEALQAVASQLSASLNIQLLCGGVPLEDQLVELAAKPQVLVAT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   +++  +K +VLDEAD +L++GF  D++ ++   PK ++ L+FSAT+  
Sbjct: 152 PGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQKLMAFMPKLKQTLLFSATLPE 211

Query: 192 AITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           A+ TL  K    + +RV     N    +I+ +  LV    +   ++ +L+ +     +VF
Sbjct: 212 ALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGSKAQVLIALLKQYQWPQVLVF 271

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S R       K LA+   +V AL GE  Q  RS  L   +  R +V +ATD+ ARGI +
Sbjct: 272 ISARDDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKANRIQVLVATDLMARGIHV 331

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 332 DALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISLV 369


>gi|221056985|ref|XP_002259630.1| snrnp protein [Plasmodium knowlesi strain H]
 gi|193809702|emb|CAQ40404.1| snrnp protein, putative [Plasmodium knowlesi strain H]
          Length = 1001

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 28/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  L
Sbjct: 582 NLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL 641

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+ 
Sbjct: 642 PPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEEQAFELRK 701

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  I++GTPGR+ D +      ++    V+LDEAD M+D+GF D + FILD  P      
Sbjct: 702 GVEIIIGTPGRIQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTSNLKS 761

Query: 180 --------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                               R   MFSAT+ PA+  L++ Y +    ++I         I
Sbjct: 762 EDEALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAGKRSI 821

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +   +    +   +  +L  +     IVF + +       K +++  F+ VAL G  +
Sbjct: 822 EQKLEFITEGKKKQKLQEVLEVYEPP-IIVFVNQKKVADIIAKSISKMKFRAVALHGGKA 880

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R   L   ++G   + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRTGRAG
Sbjct: 881 QELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRTGRAG 940

Query: 340 RKGMSV-FVIPQN 351
            KG+++ FV  Q+
Sbjct: 941 MKGLAISFVTEQD 953


>gi|269961058|ref|ZP_06175427.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
 gi|269834277|gb|EEZ88367.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
          Length = 411

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +     +V
Sbjct: 189 SNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|241955319|ref|XP_002420380.1| ATP-dependent rRNA helicase, putative; ribosomal biogenesis
           protein, putative [Candida dubliniensis CD36]
 gi|223643722|emb|CAX41458.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 635

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 197/398 (49%), Gaps = 45/398 (11%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAEND 67
           I EA++  GY  +T VQ + +      KDV+V A TGSGKT++F + +   +   L + D
Sbjct: 21  IKEAIASMGYPTMTPVQASTIPLLSGNKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPD 80

Query: 68  RFSPASAP------LALAIAPTRELAVQV----GRELEWL-----YAKTG--VVVAVCIG 110
                  P      L++ ++PTRELA Q+     + L++L     Y      +   + +G
Sbjct: 81  SDGDLPEPVKRGHMLSIVLSPTRELANQIQTVFNQVLQYLPEDDNYNNKSRRIGTQLLVG 140

Query: 111 GVSVHRERRD--LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +   R+  +  LQN  HI++GTPGR+ + +   + +  S L+ V+LDEAD++LD  F  
Sbjct: 141 SIGNVRDDLNQFLQNQPHILIGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEK 200

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN------RQHSDIDY 221
           D+  IL   PK+RR  +FSATIS A  T+ +    + V+V + S+N           +  
Sbjct: 201 DVINILKKLPKQRRTGLFSATISSAGNTIFRTGMNNPVKVQVKSKNYLGEQSNSPKSLQL 260

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL------------AEHLF 269
             +L+    +   ++ IL  +  K AIV+  T  SV  F ++              E   
Sbjct: 261 SYMLINPELKITNLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKIYQNHPPATDGEEPL 320

Query: 270 QVVALSGELSQQERSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +  +L G+L+ + R   L     G       + + TDVAARGID+PD++LVI  +  ++P
Sbjct: 321 KFFSLHGQLNTKSRLKTLDNFTQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDP 380

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
              LHR GRTGRA + G ++ ++  N Q      F E 
Sbjct: 381 NVFLHRCGRTGRANKVGRAIVMLNDNSQEEDYIEFMEV 418


>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/410 (30%), Positives = 208/410 (50%), Gaps = 45/410 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+SE GY   T +Q+  + P L  +D++  AQTG+GKT AF L +   L     +++
Sbjct: 14  ILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMKL-----KYA 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+   ++       +   V  GG+    +  +L+ G  I+V 
Sbjct: 69  QGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKGVDIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D      +N+  LK +V+DEAD+M+D+GF   I  IL+  P+KR+ L+FSAT+S
Sbjct: 129 TPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAK 245
             +  +A ++      + +  +      +  +AV    + +    +N+L++         
Sbjct: 189 ELVRKIAGDFLAFPTVIEVTEQATPAKTVQ-QAVYKVPNQKTK--LNLLQHLLKDDESFH 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLF----------QVVALSGELSQQERSNALQMMRDGRA 295
             IVFC         TK +A+++F          QV  +     Q  R N++   ++G  
Sbjct: 246 RLIVFCK--------TKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP--QNM 352
           R+ +ATDVAARG+D+ ++  VI+ E+    E+ +HR GRTGRA  +G ++ F  P  +  
Sbjct: 298 RILVATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEEYY 357

Query: 353 QRRAERLFREANVSVVWEPAPSV---------EAI-RERDAQRILQDPLF 392
            R+ E+L R++ + V+  P             +AI RE D Q+   DP F
Sbjct: 358 VRKIEKLIRQS-IPVLEIPEGVFVEKTGFEERQAIAREIDNQKKKDDPDF 406


>gi|238784757|ref|ZP_04628760.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
 gi|238714353|gb|EEQ06362.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 182/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI +AL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+   
Sbjct: 18  PLVI-QALENKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLS--- 73

Query: 68  RFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +PA      + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L
Sbjct: 74  --NPAQEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           ++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   K
Sbjct: 132 ESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDK 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++
Sbjct: 192 RLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSI 357


>gi|115969337|ref|XP_001196243.1| PREDICTED: similar to R27090_2 [Strongylocentrotus purpuratus]
          Length = 305

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 160/306 (52%), Gaps = 11/306 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D +  A+TGSGKT AF L +   L    D +        L + PTREL +Q+  +   L 
Sbjct: 6   DCIGCAKTGSGKTAAFALPILQKL--SEDPY----GVFGLVVTPTRELGIQIAEQFRVLG 59

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEA 157
              G+ V V IGG+ +  + R+L    HIV+ TPGRL DHI+     ++  +K +VLDEA
Sbjct: 60  KPIGLRVTVVIGGIDMVEQGRELSKKPHIVIATPGRLADHIKSTSTFDLHAIKFLVLDEA 119

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D +L+  F  D+E I D  P KR+ L+FSATI+  +  L K         +  +      
Sbjct: 120 DRLLEGNFGPDLEVIFDFLPAKRQTLLFSATITDTMKELQKMSMDKPFSWHSKAPVATVE 179

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVA 273
            +D R VL+    +D  ++ I+     KN     I+F ST       + +L     Q   
Sbjct: 180 QLDQRYVLMPAQVKDAYLMYIISEFTEKNRDHSLIIFTSTCKYCHVLSIMLRNLGMQCAT 239

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L   + Q+ R  +L M +    R+ +ATD+A+RG+D+P ++++I+  + ++P++ +HR G
Sbjct: 240 LHSLVKQKTRIASLAMFKSNHVRILVATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVG 299

Query: 334 RTGRAG 339
           RT RAG
Sbjct: 300 RTARAG 305


>gi|212541586|ref|XP_002150948.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068247|gb|EEA22339.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 584

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 206/380 (54%), Gaps = 11/380 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   EA+ E G+  +T +Q+  + P +  +DVL +A+TGSGKT+AF   + +  L  
Sbjct: 111 NLSERTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAF--LIPAIELLH 168

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    L ++PTRELA+Q+      L  K      + +GG +   E   L+ G 
Sbjct: 169 SLKFKPRNGTGVLILSPTRELALQIWGVARQLLDKHSQTHGIVMGGANRRAEAEKLEKGV 228

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRML 183
           +++V TPGRL DH++  KG    +L+ +V+DEAD +L++GF D+++ I+      +R+  
Sbjct: 229 NLLVATPGRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGERQTS 288

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LA+ + +   + +N+    EN     ++   V+     R   + + L+
Sbjct: 289 LFSATQTTKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFSFLK 348

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV+ ++++L      V+++ G+  QQ+R++      +    + I 
Sbjct: 349 RNLKKKIIVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGILIC 408

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRRAER 358
           TDVAARG+D+P+++ V+  +   +P + +HR GRT R  + KG S+ F+ P  M      
Sbjct: 409 TDVAARGLDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFLTH- 467

Query: 359 LFREANVSVVWEPAPSVEAI 378
             +EA V VV    P  + I
Sbjct: 468 -LKEAKVPVVEFEFPQKKII 486


>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
 gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 181/361 (50%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +     +   +   ++  S  R+   I         ++   A++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|115665251|ref|XP_781784.2| PREDICTED: similar to R27090_2, partial [Strongylocentrotus
           purpuratus]
          Length = 301

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/306 (33%), Positives = 160/306 (52%), Gaps = 11/306 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D +  A+TGSGKT AF L +   L    D +        L + PTREL +Q+  +   L 
Sbjct: 2   DCIGCAKTGSGKTAAFALPILQKL--SEDPY----GVFGLVVTPTRELGIQIAEQFRVLG 55

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEA 157
              G+ V V IGG+ +  + R+L    HIV+ TPGRL DHI+     ++  +K +VLDEA
Sbjct: 56  KPIGLRVTVVIGGIDMVEQGRELSKKPHIVIATPGRLADHIKSTSTFDLHAIKFLVLDEA 115

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D +L+  F  D+E I D  P KR+ L+FSATI+  +  L K         +  +      
Sbjct: 116 DRLLEGNFGPDLEVIFDFLPAKRQTLLFSATITDTMKELQKMSMDKPFSWHSKAPVATVE 175

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVA 273
            +D R VL+    +D  ++ I+     KN     I+F ST       + +L     Q   
Sbjct: 176 QLDQRYVLMPAQVKDAYLMYIISEFTEKNRDHSLIIFTSTCKYCHVLSIMLRNLGMQCAT 235

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L   + Q+ R  +L M +    R+ +ATD+A+RG+D+P ++++I+  + ++P++ +HR G
Sbjct: 236 LHSLVKQKTRIASLAMFKSNHVRILVATDLASRGLDIPMVQMIINHNVPTSPKDYIHRVG 295

Query: 334 RTGRAG 339
           RT RAG
Sbjct: 296 RTARAG 301


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 187/360 (51%), Gaps = 8/360 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           +L E+G+   T++Q       L  +D++  AQTGSGKT++F L  A     +        
Sbjct: 101 SLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILP-ALVHAKDQQPLRRGD 159

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ L +APTREL +Q+ + ++       +      GG S   + R L  GA +V+ TPG
Sbjct: 160 GPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPG 219

Query: 134 RLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D H +G    +S +  +VLDEAD MLD+GF   +  I+  +   R+ LM+SAT    
Sbjct: 220 RLIDLHDQGHA-PLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPRE 278

Query: 193 ITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +  LA++Y  + ++V + +E  + +S I     + +  ++++ ++ +L        IVFC
Sbjct: 279 VRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVFC 338

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + + +      VL    +   AL G+ SQ  R   L   R GR  + IAT+VA RG+D+ 
Sbjct: 339 NMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVN 398

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRK-GMS--VFVIPQNMQ-RRAERLFREANVSV 367
           D++LVI+ +   + E+ +HR GRT R   K G+S   F +      R   R+ REAN +V
Sbjct: 399 DVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTV 458


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 178/359 (49%), Gaps = 7/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I   L   G+   T +Q       L  +D++  AQTGSGKT++F L     + A+
Sbjct: 120 SFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHINAQ 179

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL + PTRELA QV + +   Y +   +   C+ GG S   + RDL+ G
Sbjct: 180 -PYLERGDGPIALVLCPTRELAQQV-QAVANDYGQLCHIRNTCVYGGASKAPQIRDLERG 237

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 238 CEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLM 297

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILR 240
           +SAT    +  LA ++ +D V + I S N   +    + V V   D  +     ++  + 
Sbjct: 298 WSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIM 357

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+      T+ +    +  + + G+ SQ ER   L   R G++ + +A
Sbjct: 358 GEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILVA 417

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVA+RG+D+ D++ VI+ +  +  E+ +HR GRT RA + G +     Q   ++ + L
Sbjct: 418 TDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDL 476


>gi|158316506|ref|YP_001509014.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158111911|gb|ABW14108.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 491

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 179/361 (49%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + + L+       T +Q A L   L  +DVL   +TGSGKT+AF L + + L   
Sbjct: 8   GVPARLTDVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPVVARL--S 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A AP AL +APTRELA Q+   L  L A  G+      GGV    +   ++ G 
Sbjct: 66  GGPRAQAGAPRALVLAPTRELAAQIDTALRPLAAAAGLTSCTVFGGVGQEPQVAAIRRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +     +++ +K VVLDEAD M DLGF   +  ++  +    + ++F
Sbjct: 126 DIVVACPGRLEDLLAQGRCSLAQVKIVVLDEADHMADLGFLPAVRRLIGQTAAGGQRMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI TL + Y     R  +   +   S +   A  +   +RD+ +  ++    A 
Sbjct: 186 SATLDKAIDTLVRQYLS---RPAVHEADSAQSPVGTMAHHLLHVERDSRLPVLVDLSSAP 242

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  T+       + L     + V L G LSQ  R+  L     GRA   +ATD+A
Sbjct: 243 GRAVVFTRTKHGAKALARQLNRAGVRAVELHGNLSQNARTRNLDDFHTGRASALVATDIA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + ++ LVIHA+  ++ +  LHRSGRT RAG  G  + +      R   +L R A 
Sbjct: 303 ARGIHVDNVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTEQIREVTQLARAAG 362

Query: 365 V 365
           +
Sbjct: 363 I 363


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 185/359 (51%), Gaps = 31/359 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +A+SE  YV  T +Q+A +   L  +D+   A TG+GKT AF L +   LL  
Sbjct: 177 NISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLERLL-- 234

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +   S P+   L + PTRELAVQV      L   + + + +  GG+ +  +   L+ 
Sbjct: 235 ---YRTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALRQ 291

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  IV+ TPGRL DH+      ++  ++ ++LDEAD MLD  F D +  I+      R+ 
Sbjct: 292 GPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQT 351

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVALS 229
           ++FSAT+S  +  LA    K+ V++ + S               R+  + D  A++ AL 
Sbjct: 352 MLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALC 411

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            R + I N+L         VF  T+    R   VL     +   L G LSQ +R  +L+ 
Sbjct: 412 SR-SFISNVL---------VFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKR 461

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++G   + + TD+AARG+D+ +++ VI+  + +  ++ +HR GRT RAG+ G SV ++
Sbjct: 462 FKNGDIDILVCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLV 520


>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 179/346 (51%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL
Sbjct: 10  FDLAPELLN-ALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQHLL 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + + L   T + +A   GGV+          
Sbjct: 69  -DYPRRKPG-APRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 186

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     + V++      R+   I    Y A   +   +   +   +
Sbjct: 187 LFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHA--DSHEHKFKLLARFI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G  +V +
Sbjct: 245 EQEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVKVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +TDV+ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAV 350


>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
 gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii]
          Length = 771

 Score =  172 bits (435), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 201/372 (54%), Gaps = 25/372 (6%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72
           LS+ GY   + +Q A +   L  KD++  A TGSGKT A+ + +   LL     + PA  
Sbjct: 273 LSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLL-----YKPAKI 327

Query: 73  SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S+   + +APTRELA+QV   G+++        +   + +GG+++ ++ + L+    IV+
Sbjct: 328 SSTRVIVLAPTRELAIQVCDVGKKIGQFV--NNLNFGLAVGGLNLRQQEQQLKTRPDIVI 385

Query: 130 GTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSA 187
            TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++  IL   P+ KR+ L++SA
Sbjct: 386 ATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIPRHKRQTLLYSA 445

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-------AIVNILR 240
           T++  I  L +   +  VRV I  +  + + I      V +  RD+        ++  + 
Sbjct: 446 TMNTKIQDLIQLSLQKPVRVMI--DPPKSAAIKLVQEFVRIRKRDHLKPALLFQLIKSVD 503

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF + + S  +   +L     +V  L G L+Q++R  ++   ++    V I 
Sbjct: 504 PSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLIC 563

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + ++ Q RA  + 
Sbjct: 564 TDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGESTQDRA--IV 621

Query: 361 REANVSVVWEPA 372
           ++A  S+  E A
Sbjct: 622 KDAIKSISEEQA 633


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 191/378 (50%), Gaps = 10/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L      +  
Sbjct: 165 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSY-LLPGLVHVGA 223

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+  E     + +        GG     + RDL+ G 
Sbjct: 224 QPRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGV 283

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 284 EIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYW 343

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR-YHG 243
           SAT    +  LA+ + ++  +V I S E + +  I     +++  ++   +  +L     
Sbjct: 344 SATWPREVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMD 403

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATDV
Sbjct: 404 GSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDV 463

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLF 360
           AARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  F    N    R   ++ 
Sbjct: 464 AARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKIL 523

Query: 361 REANVSVVWEPAPSVEAI 378
           REA  +V     P++E++
Sbjct: 524 REAGQAV----NPALESM 537


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 180/347 (51%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSR 374

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 375 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 434

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 435 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 493

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  +   + +        +I    + V   D+ + ++++L      
Sbjct: 494 SATFPKQIQELASDFLSNYTFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDG 553

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 554 PEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPIL 613

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 614 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 660


>gi|45190904|ref|NP_985158.1| AER301Cp [Ashbya gossypii ATCC 10895]
 gi|74693373|sp|Q756G5|DBP8_ASHGO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|44983946|gb|AAS52982.1| AER301Cp [Ashbya gossypii ATCC 10895]
          Length = 435

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 198/360 (55%), Gaps = 23/360 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+       T++Q+A +   L  +D +  A+TGSGKT+AF   + +   A+     
Sbjct: 17  LAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLTKWSAD----- 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  + + PTRELA+Q+  +   L +   + VA+ +GG  +  +  +LQ   H ++ 
Sbjct: 72  -PCGMFGIVLTPTRELAMQIAEQFTALGSVMNIRVALVVGGEDIVSQALELQRKPHFIIA 130

Query: 131 TPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLM 184
           TPGRL  HI   G +    +  ++ +VLDEAD +L   F D +   +   P  +KR+ L+
Sbjct: 131 TPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILLTDTFSDALATCVQILPPKEKRQNLL 190

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSD-------IDYRAVLVALSDRDNAIVN 237
           F+AT++  +  L K+    + +  + S + ++ D       +    +LV    ++  +  
Sbjct: 191 FTATMTDQVLAL-KDAPPTSGKPPLFSFHVENLDDLAVPASLQTTYLLVPEHVKEAYLYQ 249

Query: 238 IL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L    + +K+AIVF +   S     ++L +   +V +L  ++ Q+ER+N+LQ  R   A
Sbjct: 250 VLSSEEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNSLQRFRANAA 309

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           RV IATDVA+RG+D+P ++LV++ ++ +NP+  +HR+GRT RAGR G ++ F+ P+++ R
Sbjct: 310 RVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFIAPKDVSR 369


>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
          Length = 795

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 188/355 (52%), Gaps = 26/355 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
           ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF + +  TLL +    
Sbjct: 296 ILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPILHTLLEDPKDL 355

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S +  P  + I+PTREL  Q+ ++++     + +   +  GG SV  +   + NG H
Sbjct: 356 IKTSTSCEPHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVMHQSNRVLNGCH 415

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRR 181
           I+V TPGRL D I RGK + +S L+ +VLDEAD MLD+GF  DIE ++D    +  ++R+
Sbjct: 416 ILVATPGRLLDFIGRGK-IRLSSLRFLVLDEADRMLDMGFLPDIEKLIDHETMAPAEERQ 474

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-----------RAVLVALSD 230
            LMFSAT    I  LA  + ++ + + +       +D++            R +L  L +
Sbjct: 475 TLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQSEKRKLLKELIE 534

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + + NI      +  +VF   +         L+E  F   ++ G+  Q+ER  AL   
Sbjct: 535 KQHQLGNI------EGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALYDF 588

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G + 
Sbjct: 589 KRGKMLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKAT 643


>gi|323490080|ref|ZP_08095301.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
 gi|323396376|gb|EGA89201.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
          Length = 431

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 171/333 (51%), Gaps = 6/333 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ + G+   T +Q+ ++   L+    +  + TG+GKT +F + +   +          
Sbjct: 15  EAVEKLGFTEPTQIQKEMMPHILKGTSAIGQSHTGTGKTHSFIIPIVERIDVSKQEVQ-- 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+  APTREL  Q+  EL+ L   +G+ V   IGG    R    L+   HIVVGTP
Sbjct: 73  ----AVISAPTRELGTQIFNELQKLVVGSGIEVKSFIGGTDKQRSINKLKTQPHIVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++   L +   K +++DEAD   DLGF ++I+ +         M +FSATI   
Sbjct: 129 GRLRDLVKENALLVHTGKILIVDEADLAFDLGFIEEIDQVAGKMKDDLEMYVFSATIPEK 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +    K Y +  + V I  +      +D+  V V    + + + ++++      AI+F +
Sbjct: 189 LKPFLKKYMESPIHVKIGDKRPTADGLDFYLVPVRSKKKMDRLQDVMKVINPYLAIIFVN 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR +       LA+   +V  + G+L+ +ER   ++ +RD   +  +ATD+AARGID+  
Sbjct: 249 TRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYIVATDLAARGIDIQG 308

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  VI+ EL  + E  +HR GRT RAG KG+++
Sbjct: 309 VSHVINYELPEDLEFFIHRVGRTARAGMKGLAI 341


>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 397

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 179/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++  H    A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEHQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|73994422|ref|XP_543371.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
           isoform 1 [Canis familiaris]
          Length = 599

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 197/360 (54%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+G AL + G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PQVLG-ALGQLGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+QV   L  +  +       + IGG +   +  R  + G 
Sbjct: 77  KLKKNQVG-AIIITPTRELAIQVDEVLAHFTKSFPQFSQILWIGGRNPADDVSRFKEQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L+ +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKVEGLDLASCVKSLEVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  + +L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  ++F ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLIFFSTCACVEYYGKALEALVKSVKIMCIHGKM-KHKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  S+    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|164683438|gb|ABY66383.1| eukaryotic initiation factor 4A [Plutella xylostella]
          Length = 422

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 177/328 (53%), Gaps = 11/328 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++    L +
Sbjct: 55  NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI----LQQ 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +      AL +APTRELA Q+ + +  L          CIGG +V  + R L++G 
Sbjct: 111 ID--TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDMRQLESGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 169 HVVVGTPGRVYDMITRRALRANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYH 242
           SAT+   +  +++ + ++ +R+ +  E      I  +   +++   +     + ++    
Sbjct: 229 SATMPDDVLEVSRCFMREPIRILVQKEELTLEGI--KQFFISIEQEEWKLETLCDLYDTL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC+TR  V   T+ + E  F V A+ G++ Q+ER   ++  R G +RV I TD
Sbjct: 287 SIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLH 330
           + ARGID+  +  VI+ +L +N EN +H
Sbjct: 347 LLARGIDVQQVSCVINYDLPTNRENYIH 374


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 183/350 (52%), Gaps = 28/350 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P S      
Sbjct: 310 YDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYELGLSAPPQSNRQYSR 369

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 370 RKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 429

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 430 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 488

Query: 186 SATISPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAI 235
           SAT    I  LA ++  + +     RV   SEN   +     D D R+ L+ L    ++I
Sbjct: 489 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYDQDKRSYLLDLL---SSI 545

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +   Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G  
Sbjct: 546 RDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDC 605

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR G  G++ 
Sbjct: 606 PILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVAT 655


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 186/358 (51%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + G+    S+Q   L   +  +D +  A+TGSGKT+AF L +   +  +     P 
Sbjct: 437 DTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHV-KDQPAVVPG 495

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL VQ+  +++      G+      GG  V ++  +L+ GA IVV TP
Sbjct: 496 DGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTP 555

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ ++   R+ ++FSAT 
Sbjct: 556 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATF 615

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V + +   +  + DI     +   ++R   ++ +L  +      +
Sbjct: 616 PRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWFDKGKIL 675

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  ++       K L +H +  ++L G   Q +R + L   +     + IAT VAARG+
Sbjct: 676 VFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNVCSLLIATSVAARGL 735

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R A  L +   +S
Sbjct: 736 DVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELS 793


>gi|311069115|ref|YP_003974038.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310869632|gb|ADP33107.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 438

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 186/350 (53%), Gaps = 10/350 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            ++++  P +I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+ L L +
Sbjct: 6   FELYDLKPFII-DAVHRLGFYEPTDIQKRLIPAVLKRESVIGQSQTGTGKTHAYLLPLLN 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTG-VVVAVC-IGGVSVHRE 117
            +    D         A+  APTRELA Q+ +E L+   + T   + + C IGG    + 
Sbjct: 65  EIDPNKDVVQ------AVITAPTRELANQIHQEALKITESMTDDSIRSKCFIGGTDKQKS 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+   H+VVGTPGR+ D I+ + LN+   K++V+DEAD MLD+GF  D+++I    P
Sbjct: 119 IDKLKTQPHLVVGTPGRIADLIKEQALNVYKAKSLVIDEADLMLDMGFIADVDYIGSRMP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  +ML+FSATI   +    K Y ++    ++  +      I++  +     D+D  + +
Sbjct: 179 EDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQITAEKIEHVLIPSKHRDKDKLLFD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+ +      IVF +T+ +       L     ++  L G L+ +ER   ++ + D     
Sbjct: 239 IMSHQNPYLGIVFANTKNTADHIASYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTY 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 299 VIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTI 348


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 195/379 (51%), Gaps = 12/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L      +  
Sbjct: 257 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSY-LLPGLVHVGA 315

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
             R      P+ L +APTRELAVQ+ +E    +       + CI GG     + RDL+ G
Sbjct: 316 QPRLEQGDGPIVLILAPTRELAVQIQQE-SGKFGSYSRTRSTCIYGGAPKGPQIRDLRRG 374

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D + G   N+  +  +VLDEAD MLD+GF   I  I+      R+ L 
Sbjct: 375 VEIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLY 434

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR-YH 242
           +SAT    + +LA+ + ++  +V I S + + +  I     +++  ++   +  +L    
Sbjct: 435 WSATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLM 494

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATD
Sbjct: 495 DGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATD 554

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERL 359
           VAARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  F    N    R   ++
Sbjct: 555 VAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKI 614

Query: 360 FREANVSVVWEPAPSVEAI 378
            REA   V     P++E++
Sbjct: 615 LREAGQVV----NPALESM 629


>gi|311249333|ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
 gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
          Length = 483

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +  R    +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|306836062|ref|ZP_07469052.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
 gi|304568089|gb|EFM43664.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
          Length = 435

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 174/361 (48%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ +   L+++G      +Q A +   L  KDVL    TGSGKT  FGL   + L   
Sbjct: 8   GLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLARLAGS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P A+ +APTRELA Q+ + L+   A  G+ V   +GGV+++   R L    
Sbjct: 68  G--ASTPGHPRAVVLAPTRELATQIQQRLDEPAAALGLRVLAVVGGVNINHHIRSLARPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D I    L+   ++   LDEAD+M D+GF   +  +L+ +P   + L+F
Sbjct: 126 DLLVATPGRAQDLIAQGKLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQRLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  + A        + +    V      N +V  +     K
Sbjct: 186 SATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMRIAARAGK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K L         L G+  Q  R+ A+    DG   V +ATD+AA
Sbjct: 246 T-IMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADGSIPVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +     L ++A V
Sbjct: 305 RGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAALIKKAGV 364

Query: 366 S 366
           +
Sbjct: 365 N 365


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 178/341 (52%), Gaps = 12/341 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  +    +   A
Sbjct: 194 LQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVERLNEDQQPLARGRA 253

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+Q+  E+  +  K  + V    GG    ++   ++ G   +VGTPGR
Sbjct: 254 PRVIILTPTRELAIQITNEIRSITKK--LKVCCFYGGTPYQQQVFSIKEGFDFLVGTPGR 311

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATI 189
           + D ++   L+++ LK VVLDE D M D+GF + +E IL       P++  + L+FSAT 
Sbjct: 312 VRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATC 371

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    ++++     Q + I  ++ A+    S +   + +I++ Y G+ 
Sbjct: 372 PDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSH 431

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +I+FC ++                   L G+L Q+ER   L+  R G   V +AT+VA
Sbjct: 432 GKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVA 491

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 492 ARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICI 532


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 181/361 (50%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +
Sbjct: 9   DLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A + L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPARI-LILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 127 DIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +     +   +   ++  S  R+   I         ++   A++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V +ATDVA
Sbjct: 247 ERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFR 361
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++    Q M  R  R  +
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDRVARYVK 366

Query: 362 E 362
           E
Sbjct: 367 E 367


>gi|153001915|ref|YP_001367596.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151366533|gb|ABS09533.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 443

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 9/338 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE------NDRFSPAS 73
            V+ T VQ+  +   L  +D+L  AQTGSGKT+AFGL L   LL +        +  P S
Sbjct: 32  LVHPTKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLLQQLLLQQQTQLQGTKSVPPS 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             LAL + PTRELA+QV   L+ + ++    + + +  GGV +  +  +L     ++V T
Sbjct: 92  NALALVLVPTRELALQVTEALQAVASQLSASLNIQLLCGGVPLEDQLVELAAKPQVLVAT 151

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   +++  +K +VLDEAD +L++GF  D++ ++   PK ++ L+FSAT+  
Sbjct: 152 PGRLLDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQKLMAFMPKLKQTLLFSATLPE 211

Query: 192 AITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           A+ TL  K    + +RV     N    +I+ +  LV    +   ++ +L+ +     +VF
Sbjct: 212 ALDTLTEKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGSKAQVLIALLKQYQWPQVLVF 271

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S R       K LA+   +V AL GE  Q  RS  L   +  R +V +ATD+ ARGI +
Sbjct: 272 ISARDDADAVAKRLAKAGMKVAALHGEKDQAVRSQTLADFKANRIQVLVATDLMARGIHV 331

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 332 DALPVVINLDLPMSAPVYVHRIGRTARAGEKGLAISLV 369


>gi|126338208|ref|XP_001370190.1| PREDICTED: similar to initiation factor 4AII [Monodelphis
           domestica]
          Length = 620

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 167/314 (53%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E           AL
Sbjct: 265 GFEKPSAIQQRAIIPAIKGYDVIAQAQSGTGKTATFAISILQQLEIELKETQ------AL 318

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A HIVVGTPGR+ D
Sbjct: 319 VLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 378

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+   +K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 379 MLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPTDVLEVT 438

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 439 KKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRK 498

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 499 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 558

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 559 INYDLPTNRENYIH 572


>gi|196000801|ref|XP_002110268.1| hypothetical protein TRIADDRAFT_23332 [Trichoplax adhaerens]
 gi|190586219|gb|EDV26272.1| hypothetical protein TRIADDRAFT_23332 [Trichoplax adhaerens]
          Length = 497

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 178/343 (51%), Gaps = 6/343 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L   GY+++T VQ  ++   L ++++LVS+ TGSGKT +F + L      E D   
Sbjct: 146 IMKNLQANGYISMTPVQMQVIPAALSKRNLLVSSPTGSGKTGSFLIPLIHMTFFEKDD-E 204

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHIV 128
              AP  L ++PTREL +Q+  + + +       +  C  +GG+ + ++   L+ G   V
Sbjct: 205 QEQAPKVLILSPTRELCIQIEDQCKEIMTGRLPNMKTCLIVGGLPLPQQLYRLKQGIQFV 264

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D I    +N S +K VV+DE D M+ LGF   +E I+   P+  + LMFSAT
Sbjct: 265 IATPGRLIDIISKHEINFSKVKTVVIDEVDAMMQLGFEKQVEQIMQVIPRDHQTLMFSAT 324

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKN 246
           ++  +  +      + +++++   N  +  + +  + V    +   +  I+    H    
Sbjct: 325 VTVGVEKMTSVMLSNPIKISVGKPNSLNPSVKHLVLWVEEQSKKKMLFTIINDGKHFHPP 384

Query: 247 AIVFCSTRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++F +++         + A+   +  +L G+  QQ+R N L++  +G+  + + T VA 
Sbjct: 385 TLIFVASKIGADFLADAINAKCRIRAASLHGDKPQQDRINTLKLFLEGKHPILVTTGVAG 444

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGIDL  ++ VIH +L +N    +H+ GRTGR    G ++ +I
Sbjct: 445 RGIDLECVKQVIHFDLPTNIHEYIHQVGRTGRLHSLGWAISLI 487


>gi|3775997|emb|CAA09201.1| RNA helicase [Arabidopsis thaliana]
          Length = 376

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/282 (32%), Positives = 161/282 (57%), Gaps = 3/282 (1%)

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+   ++   L    H++V 
Sbjct: 6   PDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVA 65

Query: 131 TPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  IL+  P +R+  +FSAT+
Sbjct: 66  TPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATM 125

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   ++ V++  AS+      +  +   VA   +D  +V IL       +++
Sbjct: 126 TKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMI 185

Query: 250 FCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           F  T    +RF  ++   L F+ + +SG+++Q +R  AL   + G   + + TDVA+RG+
Sbjct: 186 FTRT-CDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGL 244

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q
Sbjct: 245 DIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 286


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 178/341 (52%), Gaps = 12/341 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  +    +   A
Sbjct: 194 LQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVERLNEDQQPLARGRA 253

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + + PTRELA+Q+  E+  +  K  + V    GG    ++   ++ G   +VGTPGR
Sbjct: 254 PRVIILTPTRELAIQITNEIRSITKK--LKVCCFYGGTPYQQQVFSIKEGFDFLVGTPGR 311

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKR-RMLMFSATI 189
           + D ++   L+++ LK VVLDE D M D+GF + +E IL       P++  + L+FSAT 
Sbjct: 312 VRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDPEENPQTLLFSATC 371

Query: 190 SPAITTLAKNYQKDAV-RVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILR-YHGAK 245
              +  +AK Y K    ++++     Q + I  ++ A+    S +   + +I++ Y G+ 
Sbjct: 372 PDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAAVLGDIVQVYSGSH 431

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +I+FC ++                   L G+L Q+ER   L+  R G   V +AT+VA
Sbjct: 432 GKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFRQGSFEVLVATNVA 491

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARG+D+P+++LV+        +  +HRSGRTGRAGR G+ +
Sbjct: 492 ARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICI 532


>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 202/402 (50%), Gaps = 29/402 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+SE GY   T +Q+  + P L  +D++  AQTG+GKT AF L +   L     +++
Sbjct: 14  ILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPMLMKL-----KYA 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++PTRELA+Q+   ++       +   V  GG+    +  +L+ G  I+V 
Sbjct: 69  QGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIENLEKGVDIIVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D      +N+  LK +V+DEAD+M+D+GF   I  IL+  P+KR+ L+FSAT+S
Sbjct: 129 TPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRKRQNLLFSATMS 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAK 245
             +  +A ++      + +  +      +  +AV    + +    +N+L++         
Sbjct: 189 ELVRKIAGDFLAFPTVIEVTEQATPAKTVQ-QAVYKVPNQKTK--LNLLQHLLKDDESFH 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             IVFC T+         L       QV  +     Q  R N++   ++G  R+ +ATDV
Sbjct: 246 RLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNIRILVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           AARG+D+ ++  VI+ E+    E+ +HR GRTGRA  +G ++ F  P      R+ E+L 
Sbjct: 306 AARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEDYYVRKIEKLI 365

Query: 361 REANVSVVWEPAPSV---------EAI-RERDAQRILQDPLF 392
           R++ + V+  P             +AI RE D Q+   DP F
Sbjct: 366 RQS-IPVLEIPEEVFVEKTGFEERQAIAREIDNQKKKDDPDF 406


>gi|256396921|ref|YP_003118485.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256363147|gb|ACU76644.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 795

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 156/284 (54%), Gaps = 17/284 (5%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI----GGVSVHRERRDLQNGAHIVVG 130
           PL L + PTRELAVQV  +L    A  G V+A  +    GG +   +   L  G  +VVG
Sbjct: 133 PLGLVVVPTRELAVQVTEDL----AAAGKVMAARVQSVYGGRAYEPQIAALSAGVDLVVG 188

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D  +   L++S ++ +VLDEADEMLDLGF  D+E I+   PK R+ L+FSAT+ 
Sbjct: 189 TPGRLLDLAKQGHLDLSGVRMLVLDEADEMLDLGFLPDVERIVTQVPKDRQTLLFSATMP 248

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDID------YRAVLVALSDRDNAIVNILRYHGA 244
             +  LA+ Y      +  A  +   + +       YRA  +   D+   +  +L+  G 
Sbjct: 249 GQVIALARQYMSRPTHIRAADPHDTGTTVANTTQWIYRAHAL---DKTEMLARMLQAEGR 305

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VFC T+ + ++  + L    +   A+ G+L Q  R  AL+  R+G+  V +ATDVA
Sbjct: 306 GLTMVFCRTKRTAAKVAEELESRGYAAAAVHGDLGQGAREQALRAFRNGKVDVLVATDVA 365

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARGID+  +  V++ +   + +  LHR GRTGRAG  G++V  +
Sbjct: 366 ARGIDVEGVTHVVNFQCPEDDKTYLHRIGRTGRAGASGIAVTFV 409



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
          I EALS  G +    +Q A +   L   DV+  A+TG+GKT+AFG+ +   ++ E
Sbjct: 5  IAEALSAGGIITPFPIQAATIPVALTGADVIGQAKTGTGKTLAFGIPVLQRMVRE 59


>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 435

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 175/345 (50%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+   +++ GY   T +Q   +   L+ +DV+ +AQTG+GKT +F L +   L     + 
Sbjct: 48  VLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPILEKL--RQGQT 105

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L  G  ++V
Sbjct: 106 QRKKRVRALILVPTRELAMQVAEKVEQYGKATGLKGLAVFGGVDEQAQKQRLIEGVDVLV 165

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 166 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPNEVQFLLFSATL 225

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK    D   + IA+     S+I    + V    +   + +++       A++
Sbjct: 226 SRKVRELAKTAVNDPYEITIAANQASKSNISQWLITVDKDTKSALLSHLITEQQWDQALI 285

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 286 FIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKAGKIKYLVATGVAARGID 345

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 346 IEQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFK 390


>gi|255710545|ref|XP_002551556.1| KLTH0A02244p [Lachancea thermotolerans]
 gi|238932933|emb|CAR21114.1| KLTH0A02244p [Lachancea thermotolerans]
          Length = 598

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 186/358 (51%), Gaps = 21/358 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+   G+  +T VQ + +      KDV+V + TGSGKT+AF + +   ++ E    S
Sbjct: 18  IRTAIDAMGFEIMTPVQASTIPMFSGNKDVVVESVTGSGKTIAFTIPILEKVVKEVLSGS 77

Query: 71  PASAP--LALAIAPTRELAVQVGRELEWLYA----KTGVVVAVCIGGVSVHRERRD---- 120
           P       +L I+PTREL+ Q+   +E   A    ++  + +  I G S    R D    
Sbjct: 78  PLKRGHFYSLIISPTRELSKQIQDVVEAFLAYYPSESCPIKSQLIVGTSSCSVRDDVSKF 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   I++GTPGR+ D ++   +  S    VVLDEAD +LD+ F  D+E IL   PK+R
Sbjct: 138 LENAPQILIGTPGRVLDFMKASTVKTSSCGVVVLDEADRLLDVSFEKDVESILGMLPKQR 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSATIS A   + +   ++ V++ + S+ +    +    ++V   ++ + ++NI+ 
Sbjct: 198 RTGLFSATISSAGNQIYRTGMRNPVKIAVKSKVQNPESLQINYIVVKPEEKLHHLLNIIN 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMMR 291
               +  IV+  T  +V+ F   L +HL          +V +L G+L    R   L    
Sbjct: 258 NMRYRKCIVYFPTCQAVTYFYSFL-KHLSDISKTRDDLEVYSLHGKLQTNSRIGTLAKFS 316

Query: 292 DG-RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                 V + TDVAARGID+P+++LV+  +  +N E  LHR GRTGRA R G ++  I
Sbjct: 317 TSLNIAVLLTTDVAARGIDIPEVDLVLQFDPPTNAEMFLHRCGRTGRANRAGKAITFI 374


>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
           20469]
          Length = 450

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 184/382 (48%), Gaps = 30/382 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------ 66
           G+   T VQ A +   L  KDV+ SAQTG+GKT AF L     +  E             
Sbjct: 22  GFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTLQRIAVEKHDKAEKPDGKRN 81

Query: 67  ---DRFSPA------------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
              +R + A            + P AL + PTRELA Q+    + + A TG    +  GG
Sbjct: 82  AAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNVAKSVCASTGQQAVIVTGG 141

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
                +   LQ G  ++V TPGRL D +  K  ++  ++ +VLDEAD MLD+GF   +  
Sbjct: 142 AHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVLVLDEADRMLDMGFWPSVHR 201

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I++  PK  + L+FSAT+  +IT+      KD  R+ IA   +  + I+     V    +
Sbjct: 202 IMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIARTGQTAATIEQHLCSVTQGQK 261

Query: 232 DNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
              +  ++       +  +VFC T++ V    K L     +V  +  +  Q+ R+ AL  
Sbjct: 262 PQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAGLKVDVMHADRPQKARAKALDR 321

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
            R    ++ +ATDV +RGID+  +++VI+ ++  +PE+ +HR GRTGRAG  G +  F+ 
Sbjct: 322 FRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDYVHRIGRTGRAGATGQAYTFMG 381

Query: 349 PQNMQRRAERLFREANVSVVWE 370
           P  +    E  +    +   W+
Sbjct: 382 PDEVTPLREIEYFTKALVPAWD 403


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 180/359 (50%), Gaps = 16/359 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           N+P+ I   + +  Y   T VQ+    I+N D   +D++  AQTGSGKT AF L + S +
Sbjct: 251 NLPETICANVKKAKYSRPTPVQKYSIPIINAD---RDLMSCAQTGSGKTAAFLLPVLSGM 307

Query: 63  L---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                ++D  S    P A+ + PTREL +Q+  E       + +   V  GG SV  + R
Sbjct: 308 FRKGLKSDTLSEKQTPQAIVVGPTRELVLQIFLEARKFAYGSVIRPVVAYGGTSVGSQLR 367

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--P 177
           DL  G +I++ TPGRL D I    ++   ++ ++LDEAD MLD+GF  +I  +L S   P
Sbjct: 368 DLCRGCNILIATPGRLLDFINRGKVSCECVEYLILDEADRMLDMGFEPEIRRLLGSPGMP 427

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            K  R  LMFSAT    I  LA  + + D + +++       SD+    + V   D+   
Sbjct: 428 DKNSRHTLMFSATFPNEIQKLAHEFLRDDFLFLSVGRVGGACSDVTQTILQVDEEDKRET 487

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ +L          +VF  T+         L++      ++ G+  Q+ER  AL   + 
Sbjct: 488 LMQLLSDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKS 547

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G   + IAT VAARG+D+P +E VI+ +L +  +  +HR GRTGR G  G +      N
Sbjct: 548 GTCPIMIATSVAARGLDIPKVEHVINFDLPNEIDEFVHRVGRTGRCGNLGQATSFYSDN 606


>gi|242798281|ref|XP_002483137.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716482|gb|EED15903.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 591

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 203/373 (54%), Gaps = 11/373 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ E G+  +T +Q+  + P +  +DVL +A+TGSGKT+AF   + +  L  + +F P 
Sbjct: 125 EAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAF--LIPAIELLHSLKFKPR 182

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q+      L  K      + +GG +   E   L+ G +++V TP
Sbjct: 183 NGTGVLILSPTRELALQIWGVARQLLEKHSQTHGIVMGGANRRAEAEKLEKGVNLLVATP 242

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATIS 190
           GRL DH++  KG    +L+ +V+DEAD +L++GF D+++ I+      +R+  +FSAT +
Sbjct: 243 GRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGERQTSLFSATQT 302

Query: 191 PAITTLAK-NYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             +  LA+ + +   + +N+    EN     ++   V+     R   + + L+ +  K  
Sbjct: 303 TKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFSFLKRNLKKKI 362

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF S+  SV+ ++++L      V+++ G+  QQ+R++      +    + I TDVAARG
Sbjct: 363 IVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGILICTDVAARG 422

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRRAERLFREANV 365
           +D+P+++ V+  +   +P + +HR GRT R  + KG S+ F+ P  M        +EA V
Sbjct: 423 LDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFLTH--LKEAKV 480

Query: 366 SVVWEPAPSVEAI 378
            VV    P  + I
Sbjct: 481 PVVEFEFPQKKII 493


>gi|194759123|ref|XP_001961799.1| GF14747 [Drosophila ananassae]
 gi|190615496|gb|EDV31020.1| GF14747 [Drosophila ananassae]
          Length = 424

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 188/350 (53%), Gaps = 13/350 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP--- 105

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             S  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L++G 
Sbjct: 106 --SDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAITKDEETLKSGT 162

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLDVL 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +       +++L E  F  + +   ++Q+ER N  Q  +D + R+ +AT+
Sbjct: 283 EFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATN 342

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 343 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +    +   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 362


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 192/371 (51%), Gaps = 11/371 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL    +   T +QE  +   L  +D++  AQTG+GKT AF L + + L   ++   P 
Sbjct: 14  EALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPILNKL---SEGGHPE 70

Query: 73  SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVV 129
            A   + ++PTRELA Q+ +++E + Y      VAV  G  G+   ++++ L  GA +V+
Sbjct: 71  DAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQQKKGLMLGADVVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   PK+R+ +MFSAT+
Sbjct: 131 ATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYLPKERQTIMFSATM 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
              I  LA     +   V +A        +  +A  V   ++   IV ++      +  I
Sbjct: 191 PAKIQQLANTILNNPAEVKLAVSKPAEKIV--QAAYVCYENQKLGIVRSLFAEEVPERVI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F S++  V    K L      V  +  +L Q +R   +   + GR  + +ATD+ +RGI
Sbjct: 249 IFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRINILVATDIVSRGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVS 366
           D+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   + +  F E  + 
Sbjct: 309 DIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNFKNIENFLEKEIY 368

Query: 367 VVWEPAPSVEA 377
            +  PA   EA
Sbjct: 369 KIPVPAELGEA 379


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 194/364 (53%), Gaps = 20/364 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 15  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDL-------QA 67

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 68  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 127

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 128 DMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 187

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 188 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 247

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV ARGID+  +
Sbjct: 248 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQV 307

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
            LVI+ +L    EN +HR GR+GR GRKG+++ F+   ++   R  E+ +     S+   
Sbjct: 308 SLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY-----SIKIN 362

Query: 371 PAPS 374
           P P+
Sbjct: 363 PMPA 366


>gi|296421505|ref|XP_002840305.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636520|emb|CAZ84496.1| unnamed protein product [Tuber melanosporum]
          Length = 472

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +     +        AL
Sbjct: 118 GFERPSAIQQRAILPVINNRDVIAQAQSGTGKTATFSISVLQKIDLSVKQCQ------AL 171

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG  V  + + LQ+G H+VVGTPGR+ D 
Sbjct: 172 ILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTVVREDMKILQDGVHVVVGTPGRVHDV 231

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 232 IQRRALKTDAIKLFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 291

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   D + + + ++        A++FC+TR  V
Sbjct: 292 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRKV 351

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 352 DWLTEKLTARDFTVSAMHGDMDQHQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 411

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 412 NYDLPANRENYIH 424


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 183/350 (52%), Gaps = 28/350 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P +      
Sbjct: 313 YDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYEHGLSAPPQNNRQYSR 372

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PL L +APTRELA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 373 RKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 432

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 433 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 491

Query: 186 SATISPAITTLAKNYQKDAV-----RVNIASENRQHS-----DIDYRAVLVALSDRDNAI 235
           SAT    I  LA ++  + +     RV   SEN   +     D D R+ L+ L    ++I
Sbjct: 492 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLWVYDQDKRSYLLDLL---SSI 548

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +   Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G  
Sbjct: 549 RDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDC 608

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR G  G++ 
Sbjct: 609 PILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRMGNLGVAT 658


>gi|170092587|ref|XP_001877515.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647374|gb|EDR11618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 397

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L              AL
Sbjct: 43  GFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQQLDM------SIKGTQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     +    C+GG +V  +   LQ G  +VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVIALGDYMNIECHACVGGTNVREDMAKLQEGVQVVVGTPGRVFDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   ++K   LDEADEML  GF+D I  +    P+  ++++ SAT+   +  + K
Sbjct: 157 INRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDTQVVLLSATMPADVLEVTK 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMRDPVRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 277 DWLTEKMHSREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 337 NYDLPTNRENYIH 349


>gi|195434048|ref|XP_002065015.1| GK14902 [Drosophila willistoni]
 gi|194161100|gb|EDW76001.1| GK14902 [Drosophila willistoni]
          Length = 424

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 188/356 (52%), Gaps = 25/356 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEP--- 105

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             S  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L++G 
Sbjct: 106 --SDNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAIQKDEETLKSGT 162

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSTPHGKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-------QHSDIDYRAVLVALSDRDNAIV 236
           MFSAT+S  I  + K + +D + V +  E +       QH +       +  ++++  + 
Sbjct: 223 MFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYNN------LKENEKNKKLF 276

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        ++F  +        ++L E  F  + +   +SQ+ER N  Q  +D + R
Sbjct: 277 ELLDVLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMSQEERLNRYQQFKDFQKR 336

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           + +AT++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 337 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 392


>gi|87125801|ref|ZP_01081644.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
 gi|86166610|gb|EAQ67874.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
          Length = 396

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 174/339 (51%), Gaps = 7/339 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DV+ +AQTG+GKT  F L +   L   +   +      AL + PTRELA QV   +   
Sbjct: 5   RDVMAAAQTGTGKTAGFTLPMLERLC--HGARAGRRQIRALVLTPTRELAAQVLDNVRQY 62

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                +   V  GGV ++ + + L  G  ++V TPGRL D  +   +    ++ +VLDEA
Sbjct: 63  SCHLPLRSEVVFGGVKINPQIQRLAQGVDVLVATPGRLLDLHQQGAVRFEAVECLVLDEA 122

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF  DI  +L   P++R+ L+FSAT S  I  LA+      +++ +A  N+   
Sbjct: 123 DRMLDMGFIHDIRRLLSRLPERRQTLLFSATFSAPIRKLAQGMLHHPLQIQVAPANQTAR 182

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++       +  +   + +++R    +  +VF  T+   ++    L +      A+ G 
Sbjct: 183 SVEQTVHPCDMGRKAALLTHLIRSEDWQQVLVFSRTKHGANKVADQLNQEGLVAAAIHGN 242

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ  R+ ALQ  +DG  RV +ATD+AARGID+  L  V++ +L +  E+ +HR GRTGR
Sbjct: 243 KSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGR 302

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           AG  G ++ ++        E L  +A   +  E  P VE
Sbjct: 303 AGESGHAISLVAAE-----EALLLKAIERLTGEALPRVE 336


>gi|120436503|ref|YP_862189.1| ATP-dependent RNA helicase [Gramella forsetii KT0803]
 gi|117578653|emb|CAL67122.1| RhlE-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 455

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 181/345 (52%), Gaps = 10/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL +  +   T +QE   +  +  +DV+  AQTG+GKT A+ L L   L   
Sbjct: 15  NLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLLRML--- 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV  E+E L     + VA   GGV+++ + +DL  G 
Sbjct: 72  --KYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLMQGL 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TP RL D +  + + +  ++  V+DE D MLDLGF+  +  I++  PK R+ +MF
Sbjct: 130 DIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQSIMF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNIL-RYHG 243
           SAT++  +  +     K   ++++A       +ID R   +     + N + ++L     
Sbjct: 190 SATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLLKHLLADTET 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRARVCIAT 301
            +  ++F   +    R  + L E      +L  +G+ SQ  R  ++    +G +R+ IAT
Sbjct: 250 YQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGK-SQNYRLKSVGDFDEGLSRILIAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           DV ARG+D+ ++  V++ +    PEN +HR GRTGRA +KG S+ 
Sbjct: 309 DVMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLL 353


>gi|50289845|ref|XP_447354.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690916|sp|Q6FQZ0|DBP8_CANGA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49526664|emb|CAG60291.1| unnamed protein product [Candida glabrata]
          Length = 437

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 192/364 (52%), Gaps = 30/364 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q   +   L+ +D +  A+TGSGKT+AF   +  T  +E+      +    + + PT
Sbjct: 33  TAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPML-TQWSED-----PTGMFGIVLTPT 86

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +   L +   + VA+ +GG S+  +   LQ   H ++ TPGRL  HI   G
Sbjct: 87  RELAMQIAEQFTALGSYMNIRVALVVGGESIVDQALQLQRKPHFIIATPGRLAHHILNSG 146

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAITTLA 197
            +    +  +K +VLDEAD +L   F +D++  + + P  +KR+ L+F+ATI+  +  L 
Sbjct: 147 DDTVGGLKRVKYLVLDEADILLTETFSNDLKTCVGALPPKEKRQTLLFTATITDQVRALQ 206

Query: 198 KN-----------YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
                        Y+ + V  N+A      S ++   VLV    ++  +  +L      N
Sbjct: 207 DAPVQKGKQPLFCYEVENVD-NVAIP----STLNTEYVLVPEHVKEAYLYQLLTCESYAN 261

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +   +     + L     +V +L  ++ QQER+N++   R   ARV IATDVA
Sbjct: 262 STAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFRANAARVLIATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+P +ELVI+ ++ S+P+  +HRSGRT RAGRKG ++  I Q    R E +    N
Sbjct: 322 SRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRDVSRIEAIEARIN 381

Query: 365 VSVV 368
           + + 
Sbjct: 382 MKMT 385


>gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
 gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
          Length = 429

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 181/346 (52%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P VI +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL    
Sbjct: 18  PMVI-KALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTH-- 74

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              PA A      P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ + L
Sbjct: 75  ---PAIAERKTNQPRALIMAPTRELAVQIHSDAEPLARETGLRLGLAYGGDGYDKQLKVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--K 179
           + G  I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +
Sbjct: 132 EQGVDILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPVAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L
Sbjct: 192 RLNMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+         LA    +V  L+G++ Q++R   L     G   + +
Sbjct: 252 EEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGHIDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 312 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSI 357


>gi|149238155|ref|XP_001524954.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032522|sp|A5E2Z9|HAS1_LODEL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|146451551|gb|EDK45807.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 559

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 203/365 (55%), Gaps = 17/365 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L     L +   +  P 
Sbjct: 106 KAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLYSL--KIKPR 163

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V R+L   +++T     + IGG    +E   L  G +++V
Sbjct: 164 NGTAVIIITPTRELALQIFGVARQLMEYHSQT---CGIVIGGADRRQEATKLAKGVNLLV 220

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  +G    +LKA+V+DEAD +L++GF ++++ I+   P + R+ ++FSA
Sbjct: 221 ATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNEDRQTMLFSA 280

Query: 188 TISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAIV-NILRYHGA 244
           T +  +  LA+ + +   + +N+  E +   +D   +  +V  SD+   ++ + L+ +  
Sbjct: 281 TQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRNIK 340

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  + + TDVA
Sbjct: 341 KKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVA 400

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFRE 362
           ARG+D+P ++ +I  +   +P + +HR GRT R   G+    +F+ P  +     R  + 
Sbjct: 401 ARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTDGKGKSLMFLTPSELGFL--RYLKA 458

Query: 363 ANVSV 367
           ANV +
Sbjct: 459 ANVPL 463


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 176/346 (50%), Gaps = 10/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ I   ++   +   + +Q       L   D++  A+TGSGKT++F L     + A+
Sbjct: 31  HFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQ 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA+Q+ RE E     + +  A   GG   + +R  LQ G 
Sbjct: 91  -PTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGV 149

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D +  +   +  +  +VLDEAD MLD+GF   I  IL      R+ LMF
Sbjct: 150 DVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMF 209

Query: 186 SATISPAITTLAKNYQKDA-VRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILR 240
           SAT    +  LA++Y K+  V V I       N +   I Y   +   S + N ++  L 
Sbjct: 210 SATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVY---VTDQSKKINQLIKQLD 266

Query: 241 YHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+ + +F  T+      +++L +  F+ +A+ G+ +Q++R   +   + G  R+ I
Sbjct: 267 CLTQKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILI 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA+RG+D+ D+  V + +     E+ +H  GRTGRAG  G +V
Sbjct: 327 ATDVASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAV 372


>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
 gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
          Length = 758

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 197/372 (52%), Gaps = 19/372 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 186 NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI-- 243

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 244 ---YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRS 300

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+    + R+ 
Sbjct: 301 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQT 360

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+  R+ + S    ++D+    R   + +      DR+  +
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 416

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     +V  L G LSQ +R  AL+  +D + 
Sbjct: 417 SALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQI 476

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 477 DILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKM 536

Query: 356 AERLFREANVSV 367
            + + + A   V
Sbjct: 537 LKEIVKAAKTPV 548


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 216/415 (52%), Gaps = 17/415 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E  Y   T++Q   +   L+ KD+L S+ TGSGKT AF + +         R    +
Sbjct: 204 AVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKFY----RSPFTN 259

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+      L   T +   + IG  ++ ++  +L+    +++ TPG
Sbjct: 260 YSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRGNPEVIIATPG 319

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++  + +++ +L+ ++ DEAD++LDLGF    + I+++  ++R+ L+FSAT++  
Sbjct: 320 RLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQTLLFSATLTSE 379

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFC 251
           +  L     +  +R+    + + +  +  + + +   D R+ A++ I   +  +  I+F 
Sbjct: 380 VNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQHEDFREAALLAIAAKYYKERTIIFF 439

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R   +      +V  L G+L+Q +R  A    ++G+ +  +ATD+A+RG+D+ 
Sbjct: 440 KTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLMATDLASRGLDIQ 499

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            ++ VI+ EL S     +HR GRT RAG +G+S+ +      +  +++ +E    ++ + 
Sbjct: 500 GVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLKENKDKMMEKV 559

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           + SVE +++           + + IQ  E+++V VL  +    ++    + + +A
Sbjct: 560 SLSVETLQK-----------YKEKIQNVEREVVKVLEEEQAERQLRKAEMELQKA 603


>gi|262173110|ref|ZP_06040787.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890468|gb|EEY36455.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/325 (34%), Positives = 171/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L     + SP    L L   PT
Sbjct: 24  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERL-----KTSPEQQTLVLL--PT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 77  RELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPNILVATTGRLFD-LTQSG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 136 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMRA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 196 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGVVATALHGDKSQAEREAALAEFKNGTTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGQQGIALSLV 340


>gi|26346388|dbj|BAC36845.1| unnamed protein product [Mus musculus]
          Length = 533

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGIQVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|254577701|ref|XP_002494837.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
 gi|238937726|emb|CAR25904.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
          Length = 771

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 194/367 (52%), Gaps = 14/367 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    +   L +  YV LT +Q   +   L+  DVL +A+TGSGKT+AF + +   
Sbjct: 41  FQDLPLSNAVLRGLKDASYVKLTDIQRDSIPVSLKGNDVLGAAKTGSGKTLAFLIPVLEK 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   +
Sbjct: 101 LYRE--RWTEYDGVGALIISPTRELAMQIYEVLIKIGTHCSFSAGLVIGGKDVKFEAERI 158

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  +I++GTPGRL  H+ +  GLNI +L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 159 -SKINILIGTPGRLLQHLDQSVGLNIDNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPIR 217

Query: 181 RMLMFSATISPAITTLAK----NYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAI 235
           + L+FSAT S ++  LA+    +Y+      N++ S+      +    ++V L+D+ + +
Sbjct: 218 QTLLFSATQSQSLNDLARLSLTDYKTVGTPANVSGSQPETPETLQQHYIVVELADKLDTL 277

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++ H     IVF S+   V    +     +    ++ L G   Q+ R+  L      
Sbjct: 278 FSFIKTHLKCKMIVFFSSSKQVHFVYETFRKLQPGISLMHLHGRQKQRARTETLDKFSRA 337

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
           +    IATDV +RGID P ++ V+  +   N +  +HR GR+ R G++G S+ ++ PQ  
Sbjct: 338 QQVCLIATDVVSRGIDFPAVDWVVQVDCPENVDTYIHRVGRSARYGKQGKSLIMLTPQEN 397

Query: 353 QRRAERL 359
           +   +RL
Sbjct: 398 EPFLQRL 404


>gi|3288677|dbj|BAA31233.1| rhlE [Vibrio alginolyticus]
          Length = 411

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 181/342 (52%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +     ++
Sbjct: 189 SNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 197/374 (52%), Gaps = 36/374 (9%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA------------EN 66
           GY   T VQ+  +   +  +D++  AQTGSGKT AF + L + +L             +N
Sbjct: 308 GYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLINNVLQAGPEALYKSTTQQN 367

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNGA 125
            R      P AL ++PTREL++Q+  E      +T +  A+  GG   +RE+   L+ G 
Sbjct: 368 GRRR--QYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYGGRENYREQINKLRLGV 425

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---PKKRRM 182
           HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I  I+D S   PK +R+
Sbjct: 426 HILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQIRQIVDLSKMPPKGQRV 485

Query: 183 L-MFSATISPAITTLAK-----NYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             MFSAT    I  LA+     NY   AV RV   SEN     I  + V V   ++ + +
Sbjct: 486 TAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSEN-----IMQKIVWVEEHEKKSFL 540

Query: 236 VNILRYHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +++L   G  +A+  VF  T+   S     L +  + VVA+ G+L Q +R   L+  R G
Sbjct: 541 MDLLD-AGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDREKHLETFRSG 599

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
            A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++        +
Sbjct: 600 VATILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGLATSFFNDKNR 659

Query: 351 NMQRRAERLFREAN 364
           N+ R    L  EAN
Sbjct: 660 NIARDLAELVVEAN 673


>gi|289640625|ref|ZP_06472797.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
 gi|289509514|gb|EFD30441.1| helicase domain protein [Frankia symbiont of Datisca glomerata]
          Length = 579

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/271 (37%), Positives = 147/271 (54%), Gaps = 2/271 (0%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL +QV  +++   +  G+ V    GG +   +   L+ G  IVVGTPGRL D  
Sbjct: 2   VVPTRELCLQVTADIDRAGSGRGLRVLPVYGGRAYEPQLASLRAGVDIVVGTPGRLLDLA 61

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R   L ++ ++ +VLDEADEMLDLGF  D+E IL   P  R+ L+FSAT+ P + +LA+ 
Sbjct: 62  RQNALVLTAVRMLVLDEADEMLDLGFLPDVERILAQLPDIRQTLLFSATMPPPVISLARR 121

Query: 200 YQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  V V      E R   DI          D+   +  +L+  G   AIVF  TR + 
Sbjct: 122 FMRRPVHVTAEHPDEGRTVPDISQHVFRAHALDKIEVLARVLQAEGRGLAIVFVRTRRTA 181

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            R    L    F   A+ G++ Q +R  AL+  R G+  V +ATDVAARGID+  +  V+
Sbjct: 182 DRVADDLTGRGFAAAAVHGDIGQGQREQALRAFRSGKIDVLVATDVAARGIDIGGVTHVV 241

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +   +    LHR GRTGRAG  G++V  +
Sbjct: 242 NYQCPEDENVYLHRVGRTGRAGGSGVAVTFV 272


>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 445

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 19/375 (5%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-- 351
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDY 361

Query: 352 -----MQRRAERLFR 361
                ++R AE L +
Sbjct: 362 KLLGKIKRYAEELLK 376


>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 445

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A    L  +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHAD--NLEHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +  R    +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|19387227|gb|AAL87144.1|AF479825_1 DEAD box RNA helicase Vasa [Oncorhynchus mykiss]
          Length = 396

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 168/314 (53%), Gaps = 10/314 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+ +     +FS    P  + +APTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GG+S     R++  G +++  TPGRL D I RGK + +S L+ +VLDE
Sbjct: 61  AHGTCVRPVVVYGGISTGHTIREILKGCNVLCATPGRLMDIIGRGK-IGLSKLRYLVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDSS--PKK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIAS 211
           AD MLD+GF   +  ++ S   P K  R+ LMFSAT    I  LA ++ +KD + + +  
Sbjct: 120 ADRMLDMGFEPAMRKLVGSPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGV 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                SD++   V V    + + ++ +L+  G++  +VF  T+         L       
Sbjct: 180 VGGACSDVEQVVVQVTKFSKRDQLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNT 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R GR  V +AT VAARG+D+ D++ +++ +L +N +  +HR
Sbjct: 240 TSIHGDREQREREQALGDFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHR 299

Query: 332 SGRTGRAGRKGMSV 345
            GRTGR G  G +V
Sbjct: 300 IGRTGRCGNTGRAV 313


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 188/344 (54%), Gaps = 22/344 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRF 69
           G  +   G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +  + R 
Sbjct: 241 GRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM 300

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
                P  L ++PTRELA Q+  ++E L + K+  +   C+ GG     + ++++ G  I
Sbjct: 301 ----GPTILVLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDI 354

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++A
Sbjct: 355 VVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTA 414

Query: 188 TISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           T    +  +A +   +  +VNI +  E   +  I     ++A  ++ + +  ILR    G
Sbjct: 415 TWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPG 474

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +K  I+FCST+    R    LA +L   F   A+ G+ SQ ER + L   R GR  V +A
Sbjct: 475 SK-IIIFCSTK----RMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVA 529

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 530 TDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 190/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E +  + + + T +Q       L   D++  A TGSGKT+++ L      +   
Sbjct: 99  FPANLMEVVKRQNFTDPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSY-LLPGIVHINHQ 157

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G 
Sbjct: 158 PFLQRGDGPILLVLAPTRELAQQV-QQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+++ +D V +NI + E   + +I     +    ++D  +V ++     
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDEKLVRLMEEIMS 336

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +   
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 457 VLREANQAI 465


>gi|226823309|ref|NP_001152847.1| eukaryotic initiation factor 4A-I isoform 2 [Mus musculus]
 gi|74151289|dbj|BAE38776.1| unnamed protein product [Mus musculus]
          Length = 364

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 175/328 (53%), Gaps = 8/328 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHR 331
            ARGID+  + LVI+ +L +N EN +HR
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHR 359


>gi|229085106|ref|ZP_04217357.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
 gi|228698231|gb|EEL50965.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
          Length = 389

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 185/350 (52%), Gaps = 9/350 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     D +  ++ ++ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMVDAVHDVIKATMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++  +   V +       S +++  ++    ++++ +  I+ + 
Sbjct: 175 VFFSATMTKDAEEVARDFAVEPQLVRV-KRTETKSLVEHTYIVCERREKNDYVRRIM-HI 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GNVKAVAFLNDPYRLDEIAEKLRYRKMKASALHAEASKQEREATMRAFRQGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 183/337 (54%), Gaps = 12/337 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKD-------LQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 95  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 155 DMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV ARGID+  +
Sbjct: 275 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            LVI+ +L    EN +HR GR+GR GRKG+++  I +
Sbjct: 335 SLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371


>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
 gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
          Length = 952

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/365 (29%), Positives = 188/365 (51%), Gaps = 30/365 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +  TL   ++     
Sbjct: 36  KAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQTLKGHSE----V 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   +++ TP
Sbjct: 92  VGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FSAT+   
Sbjct: 152 GRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLLFSATLPSQ 211

Query: 193 ITTLAK-NYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--------- 241
           +T  ++   + D+   + +  E+     +D   +      +  A++++LR          
Sbjct: 212 LTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKLQSMGNANA 271

Query: 242 ----------HGAKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
                      G K A     IVF +TR +V  F  +L +       + G + Q +R+++
Sbjct: 272 DSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQTQRTSS 331

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG KG+   
Sbjct: 332 LSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGAKGLCAS 391

Query: 347 VIPQN 351
           ++  +
Sbjct: 392 LVTHD 396


>gi|12856848|dbj|BAB30802.1| unnamed protein product [Mus musculus]
          Length = 499

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+ ++T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L            +  IGG +   +  R  Q+G 
Sbjct: 77  KLKKNQVG-AIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++        S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATSTQKTPSRLENHYMICKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   L   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALLKKVKILCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
 gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
          Length = 442

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL
Sbjct: 10  FDLAPELLN-ALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPAIQHLL 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + E L   T + +A   GGV+          
Sbjct: 69  -DYPRRKPG-APRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTL 186

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     + V+++     R+   I    Y A   +   +   +   +
Sbjct: 187 LFSATLEGDLLEDFADRTLNEPVKIDAEPSRRERKKIQQWYYHA--DSNEHKFKLLARFI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V +
Sbjct: 245 EQEQVSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +TDV+ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAV 350


>gi|297741203|emb|CBI32154.3| unnamed protein product [Vitis vinifera]
          Length = 401

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 15/321 (4%)

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+  R S  + PLAL ++PTREL+ Q+  E +    +TGV V V  GG  ++++ RDL+ 
Sbjct: 6   AQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLER 65

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKK- 179
           G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P+  
Sbjct: 66  GVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGV 125

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I  LA ++  + + + +         I  R   V  SD+ + ++++L
Sbjct: 126 RQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLL 185

Query: 240 R------YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                   HG +   +VF  T+         L  + F   ++ G+ SQQER +AL++ + 
Sbjct: 186 HAQRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKS 245

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N 
Sbjct: 246 GATPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENN 305

Query: 352 --MQRRAERLFREANVSV-VW 369
             + R    L +E+N  V  W
Sbjct: 306 SSLARGLAELMQESNQEVPAW 326


>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 180/349 (51%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           + Q I + +S+ GY   T++Q+  +   LR  D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPILQKLSQGE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L +APTRELAVQV ++++       +      GGV    +++ L +G 
Sbjct: 68  TQRKKRIRA---LILAPTRELAVQVEQKVQDYSKNLPLTSLAMYGGVDEASQKQALIDGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  ILD  P   + L+F
Sbjct: 125 DILVATPGRLIDMYGKRAVHFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    D   ++IA+      +I+   + V    +   + +++  +   
Sbjct: 185 SATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLINENDWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +      A     SQ  RS  L   + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+  L  VI+ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 305 RGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFK 353


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 12/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   + + G+V+ T +Q       L  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 206 LPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAF-LLPAVVHINAQ 264

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA+Q+  E +     + +    C GGV    + R LQNG  
Sbjct: 265 PYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQARMLQNGVE 324

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+S
Sbjct: 325 ICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQTLMWS 384

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA++   ++ V V +        +I     +V  + +   +  ++R   + 
Sbjct: 385 ATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMRAVASA 444

Query: 246 N-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A++F  T+      T+VL    +  +++ G+  Q ER   L   + GR  + 
Sbjct: 445 SGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIM 504

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +      +  + A+ 
Sbjct: 505 IATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTADKAKLAKP 564

Query: 359 L---FREANVSV 367
           L    REA+  V
Sbjct: 565 LIGILREASQPV 576


>gi|225455822|ref|XP_002275026.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 580

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 249/485 (51%), Gaps = 34/485 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+ N+T +Q   + P L  KDVL +A+TGSGKT+AF   + +  L  +  F P 
Sbjct: 105 KAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAF--LIPAVELLYHISFMPR 162

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V ++L   + +T   + + IGG +   E   L  GA+++V
Sbjct: 163 NGTGVVVICPTRELAIQTHAVAKDLLKYHTQT---LGLVIGGSARRGEAERLAKGANLLV 219

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH++  KG    +LK +++DEAD +L+  F ++++ I+   PK+R+  +FSAT
Sbjct: 220 ATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALFSAT 279

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAK 245
            +  +  LA+ ++Q   V +++     + ++  +     +V  + R   + + L+ + +K
Sbjct: 280 QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRNLSK 339

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  SV   +++L       + + G+  QQ+R++           + + TDVAA
Sbjct: 340 KVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTDVAA 399

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQRRAERLFREA 363
           RG+D+PD++ ++  +    P+  +HR GRT R  G+KG + +F+IP+ +Q    R  + A
Sbjct: 400 RGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQFL--RYLKAA 457

Query: 364 NVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            V V  +E      A  +   ++++ +  +L+    D  +   +    H  + I      
Sbjct: 458 KVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDI----FN 513

Query: 423 IHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +HR  L A         P ++  +S+ S   +FR  +   +   GSR+ F  S+ +    
Sbjct: 514 VHRLDLQAVASSFCFSSPPKVN-LSIDSSASKFRKKTHKVE---GSRNGFSESNPYGRQR 569

Query: 474 GSKQK 478
           G   K
Sbjct: 570 GQDDK 574


>gi|213403328|ref|XP_002172436.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000483|gb|EEB06143.1| ATP-dependent RNA helicase dbp8 [Schizosaccharomyces japonicus
           yFS275]
          Length = 456

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 31/347 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+ ++   L   D +  A+TGSGKT+AF L +        D F       A+ + PT
Sbjct: 31  TPIQKGVIKKVLEGADCIGGAKTGSGKTIAFALPILEKW--ARDPF----GTFAVILTPT 84

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +   L A   +   + +GG+ +  +   L    HIVV TPGRL D IR  G
Sbjct: 85  RELAIQIDEQFAALGAPMNLKHILVVGGMDMVAQAIALSKRPHIVVATPGRLADLIRSNG 144

Query: 144 ----LNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAITTLA 197
                ++   + VV DEAD +L   F DD++  L+    P+KR+ L+F+AT++ AI  L 
Sbjct: 145 EETYASLHRTQFVVFDEADRLLSPTFADDLDDCLEVLPPPEKRQTLLFTATMTDAIRALK 204

Query: 198 KN-----------YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--HGA 244
                        Y+ D   V+I     QH       +LVA   RD  +V +L    +  
Sbjct: 205 DREPHPGKPPLWLYEVDTEGVSIPESLEQHY------LLVASHVRDAYLVQLLSSPENED 258

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ IVF +   +V    ++L    F+V  L  E++Q+ER N+L   R   ARV IATDVA
Sbjct: 259 KSVIVFANRTYTVELLYRMLRLLDFRVTCLHSEMAQRERVNSLGRFRAEAARVLIATDVA 318

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +RG+D+P +++V++ ++  +P++ +HR GR  R GR G SV  + ++
Sbjct: 319 SRGLDIPSVKMVVNYDIPRDPDDYVHRVGRAARVGRFGESVSFVTEH 365


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 189/358 (52%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 550 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLEDG 608

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 609 DGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 668

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 669 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 728

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  V V +   +    D++   V+++   +   ++ +L  Y    + I
Sbjct: 729 PRQMEALARRILKKPVEVIVGGRSVVCKDVEQNVVILSDEAKFFKLLELLGVYQETGSII 788

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 789 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 848

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +   I     R A  + R  ++S
Sbjct: 849 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGSAYTFITPEQSRYAGDVIRALDLS 906


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 188/344 (54%), Gaps = 22/344 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRF 69
           G  +   G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +  + R 
Sbjct: 241 GRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM 300

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHI 127
                P  L ++PTRELA Q+  ++E L + K+  +   C+ GG     + ++++ G  I
Sbjct: 301 ----GPTILVLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDI 354

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++A
Sbjct: 355 VVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTA 414

Query: 188 TISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           T    +  +A +   +  +VNI +  E   +  I     ++A  ++ + +  ILR    G
Sbjct: 415 TWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPG 474

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +K  I+FCST+    R    LA +L   F   A+ G+ SQ ER + L   R GR  V +A
Sbjct: 475 SK-IIIFCSTK----RMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVA 529

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           TDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 530 TDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573


>gi|116180670|ref|XP_001220184.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
 gi|118593420|sp|Q2HFP1|IF4A_CHAGB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|88185260|gb|EAQ92728.1| cell cycle control protein-related [Chaetomium globosum CBS 148.51]
          Length = 397

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 168/314 (53%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++         +  P   +  A
Sbjct: 43  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ-------KIDPTVKSCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  ++VGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVIVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   D + + + ++        A++FC+TR  
Sbjct: 216 TKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTDKLQARDFTVSAMHGDMDQTQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 336 INYDLPANRENYIH 349


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 12  LIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 59

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 60  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALA 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 116 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +    +   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 175 VMCSATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD
Sbjct: 235 QWPQVLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATD 294

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++
Sbjct: 295 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLV 340


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 287 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 345

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 346 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 404

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 405 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 464

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 465 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 524

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 525 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 584

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 585 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 644

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 645 LVDVLREANQEI 656


>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 449

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A    L  +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHAD--NLEHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 13/344 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--------N 66
           L+E  Y   T +Q   +   LR  D++  A TGSGKT  F L L   +  +        N
Sbjct: 23  LTELEYQQPTPIQAQAIPSILRGHDLIAGANTGSGKTATFALPLLQHIFEQQQAQKNVSN 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
            R    +   +L + PTRELA QV   ++ +     G +  V + GGVS + +   L+ G
Sbjct: 83  SR-EKGNYVTSLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  ++ +VLDEAD ML LGF D++  +L   PKK++ L+
Sbjct: 142 TDILVATPGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSALLALLPKKKQTLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L +    + V + + S +   S +  R   V    +   + +++++H  
Sbjct: 202 FSATFPEQVQALTQELLNEPVEIQLQSADA--STLVQRVFTVNKGQKTALLAHLIKHHQW 259

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + +     + L++         G   Q  R   L+  + G   V IATD+A
Sbjct: 260 RQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVLESFKAGEINVLIATDIA 319

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 320 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 363


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 143 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 201

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 202 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 260

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 261 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 320

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 321 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 380

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 381 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 440

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 441 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 500

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 501 LVDVLREANQEI 512


>gi|269965010|ref|ZP_06179175.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269830313|gb|EEZ84538.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 445

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/329 (34%), Positives = 175/329 (53%), Gaps = 16/329 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L    ++        AL + PT
Sbjct: 57  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQK-------ALILVPT 109

Query: 84  RELAVQVGRELEWLYAKTGVVV---AVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA+QV   +     + G V+   AVC+ GGV   ++++ L    HI+V T GRL D +
Sbjct: 110 RELAMQVSEAIN----QVGQVLELNAVCLCGGVDKEQQQQALATNPHILVATTGRLVD-L 164

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
              GL++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK 
Sbjct: 165 ANNGLDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFSDELKGKAKL 224

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             +   +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +   
Sbjct: 225 LMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWTKALVFIGAKENADG 284

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L +      AL G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ 
Sbjct: 285 LAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINF 344

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           EL    E  +HR GRT RAG +G+++ ++
Sbjct: 345 ELPMYAETYVHRVGRTARAGEQGVAMSLV 373


>gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi]
          Length = 1161

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 189/345 (54%), Gaps = 8/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 501 EVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPPLEDG 559

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGT 131
             P+A+ + PTREL +Q+G++++  ++K+  +  VC+ GG  +  +  +L+ GA I+V T
Sbjct: 560 DGPIAIIMTPTRELCMQIGKDIK-KFSKSLNLRTVCVYGGTGISEQIAELKRGAEIIVCT 618

Query: 132 PGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D +    G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 619 PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSAT 678

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +L  Y    + 
Sbjct: 679 FPRQMEALARRILKKPIEVQVGGRSVVCKEVEQHVVVLEDEAKFFKLLELLGLYQEQGSI 738

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG
Sbjct: 739 IVFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDFKQGRVKLLIATSVAARG 798

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +  F+ P+ 
Sbjct: 799 LDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQ 843


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 291 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 349

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 350 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 408

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 409 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 468

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 469 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 528

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 529 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 588

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 589 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 648

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 649 LVDVLREANQEI 660


>gi|57101724|ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           isoform 1 [Canis familiaris]
          Length = 488

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +  R    +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|228997258|ref|ZP_04156882.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
 gi|229009233|ref|ZP_04166534.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228752045|gb|EEM01771.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228762532|gb|EEM11455.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
          Length = 389

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 188/352 (53%), Gaps = 13/352 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     + +  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMEAVFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + FSAT++     +A+++  + + VR+  A      S +++  ++    ++++ I  ++ 
Sbjct: 175 VFFSATMTKDAEEVARDFAVEPELVRIKRAEIK---SLVEHTYIVCERREKNDYIRRVM- 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + G   A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +A
Sbjct: 231 HTGNVKAVAFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRQGKIEILLA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 291 TDIAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 186/364 (51%), Gaps = 13/364 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+ +  P+ I  AL ++G  + T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 46  VKTFKEMKFPRPILAALKKKGITHPTPIQVQGLPAVLTGRDMIGIAFTGSGKTLVFTLPI 105

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQV-------GRELEWLYAKTGVVVAVCI 109
               L +     F     P  + + P+RELA Q         R LE  +    +   +CI
Sbjct: 106 IMFSLEQEKAMPFQRNEGPYGMIVVPSRELARQTFEVITHFSRALE-AHGFPSLRTNLCI 164

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG S+  +   ++ G H+VV TPGRL D +  + + +   + +VLDEAD M+D+GF +D+
Sbjct: 165 GGSSIKEQSDAMKRGVHMVVATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDV 224

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I      +R+ L+FSAT+   I   AK+     V VN+        D+      V   
Sbjct: 225 RTIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQE 284

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       ++F   ++ V    + L     + VA+ G+ SQ+ER +A++ 
Sbjct: 285 AKVVYLLECLQ-KTPPPVLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIRE 343

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
              G   V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I 
Sbjct: 344 FHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGVATTFIN 403

Query: 350 QNMQ 353
           ++ +
Sbjct: 404 KSCE 407


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 177/338 (52%), Gaps = 1/338 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L   GY   T +Q+ ++   L  ++ + SAQTGSGKT+A+ L     +  E ++ +
Sbjct: 12  LTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPALQQINPEAEKVT 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P    ++PT+ELA Q+            + V +  GG     E   L+ G  +++ 
Sbjct: 72  -HHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETERLKKGVDVIIA 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TP R  +HI  + ++I  ++ +V+DEAD M D+GF   +E I     ++ + ++ SATI+
Sbjct: 131 TPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERSQKIIVSATIT 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P +  LAK Y K   R+ +    +    I      V  S ++  +  ++     +  ++F
Sbjct: 191 PRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKEALLAWLISSGNYEKVLLF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +       + L    ++V  L GE + QER  +L   R+GR R+ +ATD+AARG+D+
Sbjct: 251 VRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRILVATDIAARGLDI 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            DL++VI+ ++     + +HR GRTGRAGR+G+++ ++
Sbjct: 311 SDLDVVINYDIPHVKHDFIHRVGRTGRAGREGIAITLV 348


>gi|152996051|ref|YP_001340886.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836975|gb|ABR70951.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 417

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 191/364 (52%), Gaps = 12/364 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +A+S+ G+   T +QE  +   L   D+L +A TG+GKT+AF       +L  +++ 
Sbjct: 27  TIEQAISDLGFEAPTEIQEQAIPIALDGSDLLATAPTGTGKTIAFCAPAVQHILDRDEQS 86

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +  +AP  L +AP+RELA Q+   +E L   T +   + IGG     +++ L     I+V
Sbjct: 87  T--TAPKVLILAPSRELARQIFNVVEQLTKHTRIQSHLIIGGTPYGMQQQQLSEPCDILV 144

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +    + L+++ +   V+DEAD MLD+GF   I  I    PK+ + LMFSAT+
Sbjct: 145 ATPGRLVELDEKQWLDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQTLMFSATL 204

Query: 190 SPA----ITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
                    +   N +   +R+  +S     Q   I YR  + +   ++  + ++L    
Sbjct: 205 EGEKMGRFASALLNSETQQIRLGESSRTVPSQIRQIAYR--VDSEEHKEAVLKHLLTQER 262

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F S R  V  + + + +       L GE+ Q +RS  ++ M+ GR +V +ATDV
Sbjct: 263 VQQAVLFVSNREHVDIWVQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQVLVATDV 322

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FR 361
           A+RGIDLP++  VI+  L    ++ +HR+GR  R G  G  + +I  N     E++  F 
Sbjct: 323 ASRGIDLPEINTVINLRLPRKADSYIHRAGRASREGEPGDCISLIDINDLPMIEKIQRFM 382

Query: 362 EANV 365
           +AN+
Sbjct: 383 QANI 386


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 143 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 201

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 202 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 260

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 261 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 320

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 321 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 380

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 381 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 440

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 441 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 500

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 501 LVDVLREANQEI 512


>gi|70949030|ref|XP_743963.1| snrnp protein [Plasmodium chabaudi chabaudi]
 gi|56523710|emb|CAH74477.1| snrnp protein, putative [Plasmodium chabaudi chabaudi]
          Length = 667

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 28/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  L
Sbjct: 249 NLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL 308

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+ 
Sbjct: 309 PPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRR 368

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P      
Sbjct: 369 GVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLKS 428

Query: 180 --------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                               R   MFSAT+ P++  L++ Y +    ++I         I
Sbjct: 429 EDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSI 488

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +   +    +   +  +L  +     IVF + +       K +++  F+ +AL G   
Sbjct: 489 EQKLEFITEGKKKQKLQELLEIYEPP-IIVFVNQKKVADIIAKSISKMKFKAIALHGGKV 547

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 548 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 607

Query: 340 RKGMSV-FVIPQN 351
            KG+++ FV  Q+
Sbjct: 608 MKGLAISFVTEQD 620


>gi|315434409|gb|AAK73934.2|AC025726_27 Hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 739

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 187/352 (53%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A S  GY + T +Q+A +   L  KD+   A TG+GKT AF L +   ++  
Sbjct: 154 NLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIY- 212

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   L++G 
Sbjct: 213 --RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGP 270

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+      N+S+++ +VLDEAD ML+  FRD +  ++    + R+ L+
Sbjct: 271 DVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQTLL 330

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT++  I  LA    +  V++ I +EN   + +  R   + +     +DR+  +  ++
Sbjct: 331 FSATMTEEIDELASMSLQKPVKIFI-NEN-TDTALKLRQEFIRIRAGRETDREAMVAALV 388

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 N IVF  T+    R   +L     +V  +   L+Q +R  +L   +     V +
Sbjct: 389 TRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDVLV 448

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +TD+A+RG+D+  ++ VI+  +  + +  +HR GRT RAG+ G S+ ++ ++
Sbjct: 449 STDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGED 500


>gi|291483194|dbj|BAI84269.1| hypothetical protein BSNT_01265 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 376

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 196/364 (53%), Gaps = 8/364 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N    I E  S  G+   T VQE      +  KDV+  + TG+GKT+A+ L +   + 
Sbjct: 8   LHNAQSFIQENWSASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIK 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E         P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+ 
Sbjct: 68  PEQKH------PQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKK 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VGTPGR+ + I+ K L +  +K +VLDEAD+++    R+ I+ I+ ++ + R++L
Sbjct: 122 HPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDRQLL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+      + +   ++   + +     +   + ++ ++    D+   +  + R  G
Sbjct: 182 CFSATLKKETEDVLRELAQEPEVLKVQRSKVEAGKVKHQYLICDQRDKVKLLQKLSRLEG 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A+VF     ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD+
Sbjct: 242 MQ-ALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIAAFEDGEFPLLLATDI 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++ 
Sbjct: 301 AARGLDIENLPYVIHADI-PDEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKL 359

Query: 364 NVSV 367
            V +
Sbjct: 360 GVEL 363


>gi|58331980|ref|NP_001011139.1| eukaryotic translation initiation factor 4A1 [Xenopus (Silurana)
           tropicalis]
 gi|54261694|gb|AAH84468.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
 gi|89267437|emb|CAJ82477.1| eukaryotic translation initiation factor 4A, isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 406

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 51  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ+ A HIVVGTPGR+ D
Sbjct: 105 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHIVVGTPGRVFD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 165 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVLLSATMPADVLEVT 224

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 225 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 345 INYDLPTNRENYIH 358


>gi|255087406|ref|XP_002505626.1| predicted protein [Micromonas sp. RCC299]
 gi|226520896|gb|ACO66884.1| predicted protein [Micromonas sp. RCC299]
          Length = 620

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 7/344 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            +SE GY  +T VQ   + P L  +DVL +A+TGSGKT+AF   + S  L  + +F P +
Sbjct: 133 GISELGYTRMTEVQARTIPPLLAGRDVLGAARTGSGKTLAF--LIPSVELLYHAKFMPRN 190

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + ++PTRELA+Q+    + L  K      + IGG +   E   L  G +++V TPG
Sbjct: 191 GTGVMVLSPTRELALQIYNVAQQLMKKHSQTHGLIIGGANRRAEAEKLVKGVNLLVATPG 250

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++  KG     LK   +DEAD MLD+GF +++  I+   PK R+ ++FSAT +  
Sbjct: 251 RLLDHMQNTKGFAFGSLKVFCMDEADRMLDIGFEEEMRTIVRMIPKDRQTMLFSATQTTK 310

Query: 193 ITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +  LA+   K    + +  A      + ++    +V    R   +   L+ +  K  +VF
Sbjct: 311 VEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEKRFLLLFTFLKKNLKKKVMVF 370

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S+  SV    ++L      V  + G+  QQ R+            + + TDVAARG+D+
Sbjct: 371 FSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRGILLCTDVAARGLDI 430

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           P ++ +I  +   +P+  +HR GRT R   G+    +F+IP+ +
Sbjct: 431 PAVDWIIQFDPPDDPKEYIHRVGRTARGTEGKGRALLFLIPEEL 474


>gi|218262439|ref|ZP_03476905.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223369|gb|EEC96019.1| hypothetical protein PRABACTJOHN_02583 [Parabacteroides johnsonii
           DSM 18315]
          Length = 436

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 197/361 (54%), Gaps = 23/361 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++  AL+  G   L  +Q+A+L+     KD+++ + TGSGKT+AF L L +TL  E+ +
Sbjct: 5   EIVARALANTGITALNEMQQAVLDAGTI-KDMVLLSPTGSGKTLAFLLPLLTTLTDEDRK 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL IAP+RELA+Q+   L  L A  G  V  C GG  +  E++ L++   ++
Sbjct: 64  IQ------ALIIAPSRELALQIETVLRSLGA--GYKVNCCYGGHPIRTEKKSLEHPPTVL 115

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+    +++  ++ ++LDE D+ L+LGF  +++ IL   P  RR ++ SAT
Sbjct: 116 IGTPGRIVDHLERGNIDLDSVRTLILDEFDKSLELGFLAEMKEILAHLPGVRRRVLTSAT 175

Query: 189 IS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            +   PA T +        VR++   + ++   +  R V   + D+   +  +L      
Sbjct: 176 AAVDIPAFTGITA-----PVRLSFLKDVKEAKGLTLRVVKSPVKDKLETLYKLLGELKGG 230

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++FC+ R +V R +  L E         G + Q ER  AL   R+G A V I+TD+A+
Sbjct: 231 SALIFCNYRETVERVSDYLTEMGVDNEYFHGGMEQPERERALSHFRNGSATVFISTDLAS 290

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV------IPQNMQRRAERL 359
           RG+D+P+++ VIH  L  + E  +HR+GRT R   +G++  +      +P+ + R  +  
Sbjct: 291 RGLDIPEVKNVIHYHLPVSEEAYVHRNGRTARMNAEGVAYLILNAEETVPEYITREPDEF 350

Query: 360 F 360
           F
Sbjct: 351 F 351


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 8/329 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +       +      AL
Sbjct: 52  GFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVV------DTSVREVQAL 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  + +  +     +    CIGG SV  + R L++G H+V GTPGR+CD 
Sbjct: 106 IVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDE+DEML  GF+D I  +    P   ++ + S T+   I  +  
Sbjct: 166 IKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISRTLPHEILEMTN 225

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRAS 256
            +  D VR+ +  +      I    V V   D   D   V  +    +   +   +T+  
Sbjct: 226 KFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMILSPSLKLLYSVNTKRK 285

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV ARG+D+  + LV
Sbjct: 286 VDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLV 345

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 346 INYDLPNNRELYIHRIGRSGRFGRKGVAI 374


>gi|332215079|ref|XP_003256667.1| PREDICTED: eukaryotic initiation factor 4A-II [Nomascus leucogenys]
          Length = 407

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 185/344 (53%), Gaps = 6/344 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 546 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPALEDG 604

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 605 DGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 664

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 665 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 724

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  V V +   +    D++   V+++   +   ++ +L  Y    + I
Sbjct: 725 PRQMEALARRILKKPVEVIVGGRSVVCKDVEQHVVILSDEAKFFKLLELLGVYQETGSII 784

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 785 VFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 844

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +  F+ P+ 
Sbjct: 845 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQ 888


>gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 379

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 186/339 (54%), Gaps = 5/339 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  Y     +Q   +   L  KD+L  A TGSGKT ++ L +   L  + +  S  +
Sbjct: 17  AIEKAKYTKPYPIQIEAIPAFLNRKDILGIAPTGSGKTASYILPILQLLQGKKEHRS-RN 75

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P+ L + PTRELA QV +  +    + +  +      GGVS++ +   L NG  I+V T
Sbjct: 76  IPV-LVLVPTRELAAQVAQVADNFSRFLERRIKTLAVFGGVSINPQMMKL-NGTDILVAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L+IS ++ +VLDE D++L++GFR++++ IL   PK R+ ++FSAT   
Sbjct: 134 PGRLLDLLSKNALSISDVEILVLDEMDKVLNMGFREEVDQILADIPKNRQTILFSATQDE 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  +  +  KD  R+++ +     + I+  A  ++   +   + +I+        +VF 
Sbjct: 194 TLEEVISSLLKDPKRISVKAAEVDMNLINQYAYRISAEKKGPLLRHIINSGDWSQILVFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           S+  + +   + L ++    +A  G+ SQ  R+ AL   + G+ RV +ATD+A RGID+ 
Sbjct: 254 SSIRTANNLVQKLVKNGIDALAFHGDKSQGARTEALARFKSGKTRVLVATDLAGRGIDIQ 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            L LVI+ EL  +P++ +HR GRTGRAG  G ++ +I +
Sbjct: 314 FLPLVINFELPRSPKDYVHRVGRTGRAGATGEAISLITE 352


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 181/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+   +   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 24  GLTRAAFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNP 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ GA +V+ TP
Sbjct: 84  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 144 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L        +V
Sbjct: 204 SHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRTMV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 264 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 324 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 359


>gi|312132917|ref|YP_004000256.1| srmb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773893|gb|ADQ03381.1| SrmB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 728

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 184/382 (48%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSLGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL++GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKDGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|254911116|ref|NP_001157180.1| Vasa4 protein [Acyrthosiphon pisum]
          Length = 547

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 181/351 (51%), Gaps = 13/351 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             NIP  + E +    YV  T +Q+  +   L  KD++ +AQTGSGKTVA+ L +   LL
Sbjct: 135 LNNIPDRLMENIKMCNYVKPTPIQKYSIPIILSGKDLMATAQTGSGKTVAYVLPIIQKLL 194

Query: 64  AE-----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +      DR    S P  + +APTRELAVQ+   +  L   TG+   VC GG  V  ++
Sbjct: 195 MDPQILVKDR--NHSEPQVVIMAPTRELAVQIKMVVLKLARGTGISSFVCYGGTLVSHQK 252

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---- 174
             +  G HI+V TPGRL + ++   +  S ++  VLDE D+MLD+  + DI+ ILD    
Sbjct: 253 NQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHFSM 312

Query: 175 SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            S   R+ +M SAT+  A   LAK Y  K+ + + +   +    DI     LV   ++ +
Sbjct: 313 PSVMDRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNKRD 372

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +IL+   +   IVF + + +       L E      ++ G+  Q +R  AL   R  
Sbjct: 373 ILTSILK-KDSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRTR 431

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +  V +AT VAARG+D+  +  V++ ++    E  + R GRTGR G KG++
Sbjct: 432 KMNVLVATTVAARGLDIKCVNHVLNYDMPLVIEEYVQRIGRTGRLGNKGIA 482


>gi|22652665|gb|AAN03793.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 309

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 156/300 (52%), Gaps = 2/300 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E+GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L   N    
Sbjct: 12  ILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERL--SNGPKR 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +   AL + PTRELA QV   +E       +   V  GGV V+ + + L+ G  ++V 
Sbjct: 70  KFNQVRALVLTPTRELAAQVHGSVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVDVLVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL    K R+ L+FSAT S
Sbjct: 130 TPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLHKNRQDLLFSATFS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   KD V +++A  N     ++    ++    +   +  +++ +  K  +VF
Sbjct: 190 DEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQVLVF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AARG+D+
Sbjct: 250 SKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAARGLDI 309


>gi|281350720|gb|EFB26304.1| hypothetical protein PANDA_002799 [Ailuropoda melanoleuca]
          Length = 399

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 31  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 91  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 144

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 145 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 205 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 264

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 265 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 324

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 325 LARGIDVQQVSLVINYDLPTNRENYIH 351


>gi|302915819|ref|XP_003051720.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732659|gb|EEU46007.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 397

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 191/346 (55%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +   A  AL
Sbjct: 43  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV----LQKID--TNVKACQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQDGPQVVVGTPGRVHDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 157 IQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 277 DWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 337 NYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 382


>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
 gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
          Length = 397

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN++     +  AL
Sbjct: 42  GYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRIDENEK-----STQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D 
Sbjct: 96  ILAPTRELALQIKNVITAIGLYLNVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVYDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  +LDEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQEVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V L + + + + ++        A++FC+TR  V
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFYINVELEEYKFDCLCDLYDSISVTQAVIFCNTRTKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L E  F V A+  +L Q ER   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 276 EFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANKENYIH 348


>gi|16198386|gb|AAH15842.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
          Length = 407

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|325525138|gb|EGD03018.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. TJI49]
          Length = 333

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 6/301 (1%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV TPGRL DH+
Sbjct: 1   LTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHM 60

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K +++S L  +VLDEAD MLD+GF  DI+ +L   P +R+ L+FSAT S  I  LA +
Sbjct: 61  QQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPRRQNLLFSATFSDEIKALADS 120

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
                  + +A  N     +  +   V    +   + +++R H     +VF  T+   +R
Sbjct: 121 LLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANR 180

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+  L  V++ 
Sbjct: 181 LAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDIDQLPHVVNF 240

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLF-REANVSVV--WEPAP 373
           +L + PE+ +HR GRTGRAG  G +V ++    + + R  ERL  RE    V+  +EP P
Sbjct: 241 DLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDIERLIKREIPQEVIAGFEPDP 300

Query: 374 S 374
           +
Sbjct: 301 N 301


>gi|255560725|ref|XP_002521376.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539454|gb|EEF41044.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 413

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YGLVQCQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAELSSNPENLLH 330
           + +L + PEN LH
Sbjct: 353 NYDLPTQPENYLH 365


>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
 gi|187773253|gb|EDU37055.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
          Length = 421

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 189/342 (55%), Gaps = 11/342 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   +  KD++  ++TG+GKT+A+ L +   +  E           A+ +APT
Sbjct: 27  TEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLPIFKKINTEKREMQ------AIILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            ELA+Q+  E++ + + + + V     IG  ++ R+   L+   HI+VG+PGR+ + I+ 
Sbjct: 81  HELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    +K +V+DE D++LD      ++ ++ ++ ++R++++FSATI+ +   +AK+  
Sbjct: 141 KKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIKATLRERQLMLFSATITESTLNIAKDLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           K+   V +  +N  + +I +  +     +R   +  ++     K AIVF +    +   T
Sbjct: 201 KEPQIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTT 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L  H  +   + G   +++R  AL+  R G+ ++ +++D++ARG+D+ D+  + + +L
Sbjct: 261 LKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKIQILVSSDLSARGLDVKDVTHIFNLDL 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
             NP+  LHR GRTGRA ++G ++ +I +    + R+ E+ F
Sbjct: 321 PENPKEYLHRVGRTGRASKEGTAISIITEKEIPLIRKYEKEF 362


>gi|145351031|ref|XP_001419891.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580124|gb|ABO98184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 485

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 180/345 (52%), Gaps = 7/345 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + G+  +T VQ   + P L  KDVL +A+TGSGKT+AF   + S  L  + +F P 
Sbjct: 2   KGIEQMGFKTMTEVQARCVPPLLAGKDVLGAARTGSGKTLAF--LVPSVELLYHAKFMPR 59

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTRELA+Q+    + L  K      + IGG +   E   L  G +++V TP
Sbjct: 60  NGTGVMVLSPTRELALQIYNVAQQLMEKHSQTHGLIIGGANRRAEAERLIKGVNLLVATP 119

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++  +G   S LK  V+DEAD MLD+GF +++  I+   PK+R+ ++FSAT + 
Sbjct: 120 GRLLDHMQNTRGFTFSSLKVFVMDEADRMLDIGFEEEMRTIVKMLPKERQTMLFSATQTT 179

Query: 192 AITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            +  LA+   K  + + +         + ++    +V    R   +   L+ +  K  +V
Sbjct: 180 KVEDLARLSLKSPIYIGVDDSRAVSTATGVEQGYCVVPSEQRFLLLFTFLKKNLKKKIMV 239

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S+  SV    ++L      V  + G+  QQ R+            V + TDVAARG+D
Sbjct: 240 FFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRGVLLCTDVAARGLD 299

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +P ++ +I  +   +P+  +HR GRT R   G+    +F+IP+ +
Sbjct: 300 IPAVDWIIQYDPPDDPKEYIHRVGRTARGTDGKGRALLFLIPEEL 344


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 192/368 (52%), Gaps = 13/368 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+ E +S+  +   T +Q+  +   + ++D++  AQTGSGKT AF L +   +L E
Sbjct: 200 NLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPMLHYIL-E 258

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE-RRD 120
           ND     F   + P+ L +APTRELA+Q+ +E      +T +  +   GGV+ + + RR 
Sbjct: 259 NDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATNFQLRRM 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSP 177
            + G HI++ TPG+L   +    +++  LK +V DEAD MLDLGF DD+E ++   D  P
Sbjct: 319 KEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVAHPDMPP 378

Query: 178 KKRRM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K  R+ +MFSAT    +   A  +  + + +        + D+    V VA  ++ + + 
Sbjct: 379 KGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFEKRDKLA 438

Query: 237 NILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             LR      +  +VF   +         L+ +  + V L G   Q++R  AL   R  +
Sbjct: 439 EYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGSRSVTLHGGRYQEQREEALSAFRSNQ 498

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            RV +AT VAARG+D+  +  VI+ +L  + +  +HR GRTGR G +G +V F  P+   
Sbjct: 499 YRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFYDPEQDL 558

Query: 354 RRAERLFR 361
             A+ L R
Sbjct: 559 NLAKDLVR 566


>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 449

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A    L  +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHAD--NLEHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 441

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/411 (30%), Positives = 203/411 (49%), Gaps = 29/411 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  + + I +A+++ GY N T +QE  +   L   DV+  AQTG+GKT AF L +
Sbjct: 3   MATFEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +++    P AL +APTRELA+Q+ + +E     T +      GG+    + 
Sbjct: 63  LMRI-----KYAQGMHPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +Q G  IV+ TPGRL D    + L +  +  +V+DEAD+M+D+GF   I  IL+  P 
Sbjct: 118 ETIQAGVDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPV 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   +  L++++ +    V +  +      ++   VL    +    I N+
Sbjct: 178 KRQNLLFSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVE--QVLFETPNIKTKI-NL 234

Query: 239 LRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMR 291
           L +  A     K  ++F  TR +     K LA      QV  +     Q  R N++   +
Sbjct: 235 LYHFLADEETFKRVMIFTRTRKNADSVYKFLARKFSEDQVRVIHANKGQNTRINSMNAFK 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G  R+ + TDV ARGID+  +  VI+ ++    E+ +HR GRTGRA + G ++  I + 
Sbjct: 295 SGDIRILVGTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEA 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDP 390
                +++ +   + V  EP P+   I            RE D Q+  +DP
Sbjct: 355 DVYHMKKIEQIIRLQVPVEPIPAAVEIPKTPFDEAQVIAREIDRQKRKEDP 405


>gi|123474251|ref|XP_001320309.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121903112|gb|EAY08086.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 424

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 187/374 (50%), Gaps = 20/374 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q   + P L  + V+  AQ+G+GKT AF + + + +    D   P +   AL
Sbjct: 59  GFRGPSDIQSLSIKPILMNRCVIAQAQSGTGKTGAFAIGILNRI----DTTQPTTQ--AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTG-----VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            +APTRELA Q+     + + + G     + V +  GG SV  ++   Q   HI V TPG
Sbjct: 113 VLAPTRELATQI----YYFFVEIGSKMADLKVELFKGGNSVADDQAKAQECPHIAVSTPG 168

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D I    L   +++   +DEADEML  GF   I+ I +   K  + L+FSAT    I
Sbjct: 169 RALDLISKGYLRCENIQIACIDEADEMLGEGFISQIKEIFEYLNKDIQFLLFSATFPKEI 228

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA---KNAIVF 250
            ++   +  D V++ + +E      I  +   V +    N    +L  +G+   + A++F
Sbjct: 229 LSIIDQFMNDPVKILVKAEMLTLEGI--KQFYVNVETSVNKFPTLLDIYGSLSIQKAVIF 286

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +++ +V    K    + F + A+ G + Q ER   +   R G  R  ++TD+ ARGID+
Sbjct: 287 ANSKETVEYLQKSFEANEFNISAIHGGMEQAERDRIMHQFRTGNTRALVSTDLLARGIDV 346

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             + LVI+ EL +  EN LHR GR+GR GRKG+++ +   +   R + + +     +   
Sbjct: 347 QQITLVINFELPNTAENYLHRIGRSGRYGRKGIAINICDASDMIRIKEIEKIYQTQIAEL 406

Query: 371 PAPSVEAIRERDAQ 384
           PA   + +++ ++Q
Sbjct: 407 PADIADLVKDANSQ 420


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 185/365 (50%), Gaps = 17/365 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ E    S  +      
Sbjct: 151 YERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATMETNR 210

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL +APTRELA Q+  +      ++ +   V  GG  +  +  ++  G +++V 
Sbjct: 211 RKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGGADMRAQLIEVSKGCNLLVA 270

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFS 186
           TPGRL D I    + + H + ++LDEAD MLD+GF   I  I+  D+ P   KR+ LMFS
Sbjct: 271 TPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPSGKRQTLMFS 330

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LAK++    + + +        +I      V    + +A+V++L       
Sbjct: 331 ATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSISWVEEDKKRDALVDLLSSSDPGV 390

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L    FQV ++ G+ +Q +R  AL   R+GR  + +AT VAA
Sbjct: 391 LTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRELALSCFRNGRTPILVATAVAA 450

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++        +N+ R    L  E
Sbjct: 451 RGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIATSFFNDKNRNLARGLVELLEE 510

Query: 363 ANVSV 367
            N +V
Sbjct: 511 VNQNV 515


>gi|91207081|sp|Q2UPY3|IF4A_ASPOR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|83766239|dbj|BAE56382.1| unnamed protein product [Aspergillus oryzae]
          Length = 421

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P      A
Sbjct: 67  GFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKL-------DPNVKGCQA 119

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + L  G  +VVGTPGR+ D
Sbjct: 120 LILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHD 179

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L   HLK  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 180 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 239

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 240 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 299

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 300 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 359

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 360 INYDLPANRENYIH 373


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 190/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 290 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINNQ 348

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 349 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 407

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 408 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 467

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y 
Sbjct: 468 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 527

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 528 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 587

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 588 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 647

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 648 VDVLREANQEI 658


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 190/371 (51%), Gaps = 12/371 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +   
Sbjct: 288 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINNQ 346

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G 
Sbjct: 347 QPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 405

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 406 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 465

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--YH 242
           SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y 
Sbjct: 466 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 525

Query: 243 GAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 526 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 585

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 586 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 645

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 646 VDVLREANQEI 656


>gi|114050983|ref|NP_001039472.1| ATP-dependent RNA helicase DDX55 [Bos taurus]
 gi|115502143|sp|Q2NL08|DDX55_BOVIN RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
           box protein 55
 gi|84708796|gb|AAI11256.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 [Bos taurus]
          Length = 601

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+   L E G+  +T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PKVLS-VLRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPIEEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +F  +    A+ I PTRELAVQ+   L            +  IGG +   +  R  + G 
Sbjct: 77  KFKKSQVG-AIIITPTRELAVQIEEVLSHFTKPFPQFSQILWIGGRNPGEDVARFKELGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L+ +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFETSINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETLVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|56605748|ref|NP_001008336.1| eukaryotic initiation factor 4A-II [Rattus norvegicus]
 gi|77404209|ref|NP_001029216.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|83700235|ref|NP_001958.2| eukaryotic initiation factor 4A-II [Homo sapiens]
 gi|154147698|ref|NP_001093665.1| eukaryotic initiation factor 4A-II [Sus scrofa]
 gi|176865892|ref|NP_038534.2| eukaryotic initiation factor 4A-II isoform a [Mus musculus]
 gi|197098908|ref|NP_001126879.1| eukaryotic initiation factor 4A-II [Pongo abelii]
 gi|307548907|ref|NP_001182590.1| eukaryotic translation initiation factor 4A2 [Macaca mulatta]
 gi|55621670|ref|XP_516936.1| PREDICTED: eukaryotic initiation factor 4A-II isoform 11 [Pan
           troglodytes]
 gi|74003468|ref|XP_545242.2| PREDICTED: similar to eukaryotic translation initiation factor 4A2
           isoform 2 [Canis familiaris]
 gi|194222679|ref|XP_001498096.2| PREDICTED: similar to Eukaryotic initiation factor 4A-II
           (ATP-dependent RNA helicase eIF4A-2) (eIF4A-II)
           (eIF-4A-II) [Equus caballus]
 gi|291400269|ref|XP_002716499.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 2
           [Oryctolagus cuniculus]
 gi|301758024|ref|XP_002914858.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Ailuropoda
           melanoleuca]
 gi|2507330|sp|P10630|IF4A2_MOUSE RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|45645183|sp|Q14240|IF4A2_HUMAN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|73621053|sp|Q5R4X1|IF4A2_PONAB RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|81889423|sp|Q5RKI1|IF4A2_RAT RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|109892472|sp|Q3SZ65|IF4A2_BOVIN RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|673434|emb|CAA40269.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15489200|gb|AAH13708.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|26345442|dbj|BAC36372.1| unnamed protein product [Mus musculus]
 gi|32880063|gb|AAP88862.1| eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|55716055|gb|AAH85859.1| Eukaryotic translation initiation factor 4A2 [Rattus norvegicus]
 gi|55733019|emb|CAH93195.1| hypothetical protein [Pongo abelii]
 gi|61359891|gb|AAX41782.1| eukaryotic translation initiation factor 4A isoform 2 [synthetic
           construct]
 gi|62969091|gb|AAH94422.1| Eukaryotic translation initiation factor 4A2 [Mus musculus]
 gi|74267868|gb|AAI03107.1| Eukaryotic translation initiation factor 4A, isoform 2 [Bos taurus]
 gi|85792276|gb|ABC84195.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
 gi|119598578|gb|EAW78172.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|119598583|gb|EAW78177.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_a [Homo sapiens]
 gi|123981670|gb|ABM82664.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|123996477|gb|ABM85840.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|148665242|gb|EDK97658.1| eukaryotic translation initiation factor 4A2, isoform CRA_d [Mus
           musculus]
 gi|149019926|gb|EDL78074.1| eukaryotic translation initiation factor 4A2, isoform CRA_a [Rattus
           norvegicus]
 gi|296491283|gb|DAA33346.1| eukaryotic initiation factor 4A-II [Bos taurus]
 gi|307684696|dbj|BAJ20388.1| eukaryotic translation initiation factor 4A, isoform 2 [synthetic
           construct]
 gi|227239|prf||1617105C initiation factor 4AII
          Length = 407

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
          Length = 741

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 162/314 (51%), Gaps = 5/314 (1%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT A+       ++++         P+ L + PTRELA+QV  E +  
Sbjct: 241 RDIIGIAKTGSGKTAAYLWPAIYHIISQR-HLDEKEGPICLIVVPTRELAIQVYNEAK-K 298

Query: 98  YAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           Y K   +  VC  GG S   + + L  GA +VV TPGR+ D I+ K  N   +   VLDE
Sbjct: 299 YGKYFDIRVVCAYGGGSKWEQSKALAEGAEVVVCTPGRIIDLIKAKATNFERVTYFVLDE 358

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD M DLGF   +  I D     R+ LMFSAT    I  LA++   + V+V        +
Sbjct: 359 ADRMFDLGFEAQVRSIADHIRPDRQCLMFSATFKKKIERLARDVLTNPVKVIQGEVGEAN 418

Query: 217 SDIDYRAVLVALSDRDNAIV--NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           +DI       A        +  N++++      ++F S +  V    + L    F+V  L
Sbjct: 419 ADIQQIVEYFASPPTKWTWLLGNLVKFCSMGKVLIFISQKVHVEEIAENLKAKDFRVCIL 478

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G++ Q ER+  +   +     + IATDVAARG+D+P ++ VI+ +++ + +  +HR GR
Sbjct: 479 HGDMFQHERNQVIHAFKKDDVPILIATDVAARGLDIPTIKTVINYDVAKDLDTHVHRIGR 538

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG KG +  ++
Sbjct: 539 TGRAGEKGFAYTLV 552


>gi|255072363|ref|XP_002499856.1| predicted protein [Micromonas sp. RCC299]
 gi|226515118|gb|ACO61114.1| predicted protein [Micromonas sp. RCC299]
          Length = 499

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/342 (36%), Positives = 179/342 (52%), Gaps = 24/342 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPLALAIA 81
           T VQ+A+L   +  KDVL  A+TGSGKT+AF L +   L     R  P       AL ++
Sbjct: 1   TEVQDAVLPHIMAGKDVLARAKTGSGKTIAFLLPVLEKL----KRTPPERRGGISALVLS 56

Query: 82  PTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDHI 139
           PTRELA Q+  E + L   +  +   V  GG ++  +   L++    I+V TPGRL DH+
Sbjct: 57  PTRELATQIQEECKQLLTFRRDINAQVVFGGTNIRTDVSRLKSERCDILVATPGRLIDHL 116

Query: 140 RGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
               ++  +     +V DEAD +LD+GF+  IE IL   P  R+ L+FSAT+SP I  +A
Sbjct: 117 ENGDVSARLKSCDTLVFDEADRLLDMGFKPAIEKILRHVPAGRQTLLFSATVSPEIQQVA 176

Query: 198 KNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAK--NAIVFCS 252
           K   +   V V+   E    +++  +  LV  +  D   V  +IL  H AK  N  V C 
Sbjct: 177 KKSLRSGHVFVDCVGEEESATNLQVKQSLVVAAQVDQFAVLKSILDEHCAKTPNHKVMCF 236

Query: 253 TRASVSRFTKVLAEHLFQ------VVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
              + +R T++ AE LFQ      V+ +  +LSQ  R+ A    RD    V + +DV AR
Sbjct: 237 F--TTARATQLAAE-LFQQILPTDVIEIHSKLSQSRRTKATDAFRDASRAVMMTSDVTAR 293

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID PD+ LV+     S+    +HR GRT RAG+ G  V V+
Sbjct: 294 GIDFPDVSLVVQIGAPSDRAQYIHRLGRTARAGKSGEGVLVL 335


>gi|124487974|gb|ABN12070.1| putative RNA-dependent helicase p68 [Maconellicoccus hirsutus]
          Length = 328

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 169/315 (53%), Gaps = 22/315 (6%)

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R      P+ L +APTRELA Q+ + +   Y  +  V + CI GG +   + RDL  G  
Sbjct: 12  RLQRGDGPIVLVLAPTRELAQQI-KIVASQYGTSTHVRSTCIFGGAAKGPQARDLMVGKE 70

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D ++    N+     +VLDEAD MLD+GF   I  I++     R++LM+S
Sbjct: 71  IVIATPGRLLDFLQTNATNLRRTTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWS 130

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVNI 238
           AT    + TLA+++  K  +++N+ S         RQH D+          +++N ++ +
Sbjct: 131 ATWPKEVRTLAEDFLHKKYIQLNVGSLTLSANHNIRQHIDV------CTEDEKENKLMGL 184

Query: 239 LRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L   G +     IVF  T+  V   T+ +      VV + G+ SQ +R  +L   R GRA
Sbjct: 185 LEEIGNQEENKTIVFAETKKKVDALTRKIRNAGVPVVGIHGDKSQTDRDYSLNAFRSGRA 244

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR+ + G S     +N  R 
Sbjct: 245 AVLVATDVAARGLDVDDVKYVINYDFPNSSEDYIHRIGRTGRSSQTGTSYAFFTKNNSRL 304

Query: 356 AERL---FREANVSV 367
           A+ L    +EAN  V
Sbjct: 305 AKDLVNVLKEANQQV 319


>gi|321453633|gb|EFX64849.1| hypothetical protein DAPPUDRAFT_219465 [Daphnia pulex]
          Length = 425

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 189/349 (54%), Gaps = 12/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L    +
Sbjct: 52  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVEN 110

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
           + S       L +  TRELA Q+ +E E +    T + V V  GG+++ ++ + L+ N  
Sbjct: 111 QVS------VLVLCHTRELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCP 164

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLM 184
           HIVVGTPGR+   +R K LN+  LK  VLDE D+ML+ L  R D++ I  ++P +++++M
Sbjct: 165 HIVVGTPGRILALVRSKKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMM 224

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT+S  I  + K + +D + V +  E++     +    V +  ++++  +  +L    
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFELLDVLE 284

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +ATD+
Sbjct: 285 FNQVVIFVKSIQRCMALCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVATDL 344

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             RG+D+  + +V + ++  N ++ LHR  R GR G KG+ + FV  +N
Sbjct: 345 FGRGMDIERVNIVFNYDMPENSDSYLHRVARAGRFGTKGLGITFVSDEN 393


>gi|229526460|ref|ZP_04415864.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336618|gb|EEO01636.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 437

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 177/346 (51%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          T++Q  ++   L  KDVL  A TGSGKT+A+GL L    
Sbjct: 34  VIQALPKAITEP---------TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL++S +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLLD-LTQSGLSLSRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ +
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQN 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ +R  AL   ++G  +V IATD
Sbjct: 257 PWPQVLVFIGAKENADSLTKKLNKAGVVATALHGDKSQAQREAALAEFKNGTTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG++G++  ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIAFSLV 362


>gi|673433|emb|CAA40268.1| protein synthesis initiation factor 4A [Mus musculus]
 gi|15214821|gb|AAH12547.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|29126861|gb|AAH48105.1| Eukaryotic translation initiation factor 4A, isoform 2 [Homo
           sapiens]
 gi|119598580|gb|EAW78174.1| eukaryotic translation initiation factor 4A, isoform 2, isoform
           CRA_c [Homo sapiens]
          Length = 408

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 40  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 99

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 100 ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 153

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 154 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 213

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 214 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 273

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 274 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 333

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 334 LARGIDVQQVSLVINYDLPTNRENYIH 360


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 146 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 204

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 205 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 263

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 264 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 323

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 324 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 383

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 384 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 443

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 444 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 503

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 504 LVDVLREANQEI 515


>gi|27367453|ref|NP_762980.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27359022|gb|AAO07970.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 412

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 169/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L    ++        AL + P 
Sbjct: 24  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQK-------ALILVPI 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV   +  +    G+      GGV   ++ + L    HI+V T GRL D +   G
Sbjct: 77  RELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALATNPHILVATTGRLVD-LANNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S++  +VLDEAD +L++GF  D++ I      +R+  MFSAT S  +   AK   + 
Sbjct: 136 LDLSNIHYLVLDEADRLLNMGFWPDVQNIAGQISNQRQTAMFSATFSDELKGKAKLLMQA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +    A+VF   + +     K 
Sbjct: 196 PKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGISTNALHGDKSQAEREAALAQFKSGQTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGEQGVALSLV 340


>gi|163939929|ref|YP_001644813.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229011434|ref|ZP_04168624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
 gi|229059822|ref|ZP_04197198.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|229132964|ref|ZP_04261806.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|229167008|ref|ZP_04294754.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|163862126|gb|ABY43185.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228616468|gb|EEK73547.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|228650461|gb|EEL06454.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|228719492|gb|EEL71094.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|228749832|gb|EEL99667.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
          Length = 389

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 187/353 (52%), Gaps = 8/353 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       +  ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVLDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +  SATI+ A    A++   +   V +     Q S +++  ++    ++++ I  ++ + 
Sbjct: 175 VFCSATITKAAEDAARDLTVEPQLVRVTRSEAQ-SLVEHTYIVCERREKNDYIRRVM-HM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GNVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREVTMRAFRSGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERK 345


>gi|310790877|gb|EFQ26410.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 396

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 191/346 (55%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +   A  AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV----LQKID--TNVKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 336 NYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 381


>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 25  VLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 82

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 83  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 143 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK    D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 203 SRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 263 FIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 323 IDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFK 367


>gi|85792253|gb|ABC84194.1| eukaryotic translation initiation factor 4A isoform 2 [Sus scrofa]
          Length = 407

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVPLVINYDLPTNRENYIH 359


>gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 450

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 10/345 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+ + G+   T +Q+      +  KD++  AQTG+GKT A+ L +   L   
Sbjct: 8   NLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPILQDL--- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              FS    P  L + PTREL +QV  ++        V V    GG +++ + + +  G+
Sbjct: 65  --AFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQAQAVSQGS 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  + L +  +K +V+DE D MLDLGFR  I  I +  P +R+ +MF
Sbjct: 123 DIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPTRRQNIMF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILR-YHG 243
           SAT++  + TL  ++  +  +V+IA       +I      V     + N +V++L+    
Sbjct: 183 SATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYTKANLLVHLLKDKET 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K  +VF + +    R    L E +F  ++  +    +Q  R  ++    +G  R+ + T
Sbjct: 243 YKKVLVFVANKRFADRLFNSL-EEIFSDELCVIHSNKTQNYRIRSINQFDEGINRILVTT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           DV ARG+DL  +  VI+ +  + PEN +HR GRTGRA  +G S+ 
Sbjct: 302 DVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSIL 346


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 12/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   + + G+V+ T +Q       L  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 206 LPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAF-LLPAVVHINAQ 264

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA+Q+  E +     + +    C GGV    + R LQNG  
Sbjct: 265 PYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQARMLQNGVE 324

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+S
Sbjct: 325 ICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRPDRQTLMWS 384

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA++   ++ V V +        +I     +V  + +   +  ++R   + 
Sbjct: 385 ATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQALMRAVASA 444

Query: 246 N-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A++F  T+      T+VL    +  +++ G+  Q ER   L   + GR  + 
Sbjct: 445 SGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEFKSGRMPIM 504

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +      +  + A+ 
Sbjct: 505 IATDVASRGLDVKDVKYVINYDFPGTVEDYVHRIGRTGRAGAHGTAYSFFTADKAKLAKP 564

Query: 359 L---FREANVSV 367
           L    REA+  V
Sbjct: 565 LIGILREASQPV 576


>gi|322384584|ref|ZP_08058264.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150639|gb|EFX44116.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 418

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 182/336 (54%), Gaps = 9/336 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+  G    T +QE  +   L  +DV+  + TGSGKT+A+ L     +  ++      
Sbjct: 16  ETLTRMGITEPTPIQEEAIPALLSGQDVIAQSATGSGKTLAYVLPALHNIDPDDKHVQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + I PTREL +Q+ +  + L     + +   IGG S+ R+   L+   H+VVGTP
Sbjct: 74  ----VMIIVPTRELGMQIVQVAQKLTEGGSIRIQPLIGGASLSRQVDKLKERPHMVVGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ + I+ + L +  +K V++DE D++ +LG   ++  +L +  K +++  FSAT+ P 
Sbjct: 130 GRIKELIQMRKLTVHFVKTVIVDEVDQVFELGNMQEVGAVLKTMLKSKQVAFFSATMPPR 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I   A+ + +D ++V I  +   H   ++  V+    D+ + +  ++R++  + AIVF +
Sbjct: 190 ILETAERWMQDPIKVQIKLKQPAH---EHLYVVCEERDKVDMLRRLVRHYNPRAAIVFIN 246

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
               +      L      + AL G+  +QER+  +Q  R+ + ++ +ATDVAARG+D+  
Sbjct: 247 DTDDIGEVLAKLQYVGLSIAALYGDSGKQERAKVMQDFRNNKFQLLLATDVAARGLDIEG 306

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  VI+ +   + ++ +HR GRTGR GRKG ++ ++
Sbjct: 307 VSHVINLDPPLDADHYVHRIGRTGRMGRKGTAISIV 342


>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
 gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
          Length = 398

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK    D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFK 353


>gi|321250245|ref|XP_003191742.1| translation initiation factor [Cryptococcus gattii WM276]
 gi|317458209|gb|ADV19955.1| Translation initiation factor, putative [Cryptococcus gattii WM276]
          Length = 401

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 47  GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRI------DTTVKKTQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG +V  +   L  G HIVVGTPGR+ D 
Sbjct: 101 VLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L    +    LDEADEML  GF++ I  I    P + ++++ SAT++P +  + K
Sbjct: 161 INRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTK 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  +      I    + V   + +   + ++        A++FCSTR  V
Sbjct: 221 KFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L +  F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 281 DWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLH 330
           + +L S+ EN +H
Sbjct: 341 NYDLPSSKENYIH 353


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 191/372 (51%), Gaps = 12/372 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L  A   +  
Sbjct: 146 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILP-AIVHINN 204

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+AL +APTRELA Q+ +++   +  +  V   C+ GG     + RDLQ G
Sbjct: 205 QQPLQRGDGPIALVLAPTRELAQQI-QQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRG 263

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM
Sbjct: 264 CEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 323

Query: 185 FSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           +SAT    +  LA+++  + +++NI S E   + +I     +     ++  +  +L   Y
Sbjct: 324 WSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIY 383

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +++    I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + 
Sbjct: 384 DTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNIL 443

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ 
Sbjct: 444 VATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA 503

Query: 359 L---FREANVSV 367
           L    REAN  +
Sbjct: 504 LVDVLREANQEI 515


>gi|317140737|ref|XP_001818384.2| ATP-dependent RNA helicase eIF4A [Aspergillus oryzae RIB40]
          Length = 397

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P      A
Sbjct: 43  GFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKL-------DPNVKGCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + L  G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L   HLK  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 336 INYDLPANRENYIH 349


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 183/360 (50%), Gaps = 5/360 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +     
Sbjct: 360 VMEVLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLE 418

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ ++ +       + V    GG  +  +  DL+ GA I+V 
Sbjct: 419 DDDGPIAVIMTPTRELAMQITKDCKKFTKSLSLRVVCVYGGTGISEQIADLKRGAEIIVC 478

Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +    G+  N      VVLDEAD M D+GF   +  I+DS    R+ +MFSA
Sbjct: 479 TPGRMIDMLAANNGRVTNFRRTTYVVLDEADRMFDMGFEPQVMRIVDSVRPDRQTVMFSA 538

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T    +  LA+      + + +   +    +++   V++   D+   ++ +L  Y    +
Sbjct: 539 TFPRQMEALARRILMKPIEILVGGRSVVCKEVEQHIVIINDEDKFFKLLELLGLYQDKGS 598

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF   +       K L +     +AL G + Q +R + +   + G+  V IAT VAAR
Sbjct: 599 AIVFVDKQEHADVLLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKVGVLIATSVAAR 658

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  +  R A  L +   +S
Sbjct: 659 GLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITDDQGRYAADLSKALELS 718


>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 428

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 193/397 (48%), Gaps = 25/397 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +QE  +       DVL  AQTG+GKT A+ L +   +     +++   
Sbjct: 17  AVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVLMKV-----KYAQGQ 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL +Q+      L   T + +    GG+    +  +L+ G  I++ TPG
Sbjct: 72  NMRALVLAPTRELVMQIHEAAVGLAKYTDLRMVALYGGLGPKTQMENLKKGVDIIIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D  R   + +  L+ ++LDEAD+M+D+GF   I  IL+  P+KR+ L+FSAT  P +
Sbjct: 132 RFMDLYRMGEIPVKSLQYLILDEADKMMDMGFMPQIRQILEVIPRKRKNLLFSATFQPRV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             L++ + +   ++ +       S ++   YR  L     + N +  +        AI+F
Sbjct: 192 ERLSEEFLEAPYKIEVTPSATAASTVEQHIYR--LPNFKTKINLLGYLFENTEIPRAIIF 249

Query: 251 CSTRASVSRFTKVLAEHLF---QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           C T+A      K L   +    ++  L     Q  R NA+   + G  +V ++TDVAARG
Sbjct: 250 CRTKAVADNVYKFLERKVIGSGKIRVLHANKGQNTRINAINDFKSGEIQVLVSTDVAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  +  VI+ ++    E+ +HR GRTGRA  +G+++  + ++ +   ER+ +     +
Sbjct: 310 IDVSGVSHVINFDVPLVYEDYVHRIGRTGRAKSEGIALTFVLKHEEFHIERIEKLIRNPI 369

Query: 368 VWEPAP------------SVEAIRERDAQRILQDPLF 392
              P P            + E ++  D QR   DP F
Sbjct: 370 PELPIPEKVKIEETSFEENQEMLKAIDTQRKKLDPTF 406


>gi|300708304|ref|XP_002996334.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
 gi|239605627|gb|EEQ82663.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
          Length = 403

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 22/382 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + I + I + L +   + +T +Q   +   L   D+L  + TG+GKT +F + +   LL 
Sbjct: 6   QKIDKQIVKILKDNNIIYMTPIQHKTVPLILNGHDILGISSTGTGKTFSFLVPILHNLLN 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N  F        L I PTRELA+Q+ + ++ L+   GV     IGG  +  +   L+  
Sbjct: 66  TNKSFY------CLIITPTRELALQIDKTVK-LFKSLGVKSLALIGGEKIEDQLNQLKTH 118

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIV+GTPGRL  H  GK L I+  + +VLDEAD+  +  F +++ FIL++  KKR+ L+
Sbjct: 119 PHIVIGTPGRL--HKIGKNLKINRFRVLVLDEADKYFEDDFIEEMAFILENLRKKRQTLL 176

Query: 185 FSATISPAITT----LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           F+ATI+  +      + KN+++  +  N+  E      +D     VA   ++  + ++L+
Sbjct: 177 FTATITNNLKQKSLEILKNFKEIDLSTNVKVEK-----LDEFYFFVARKYKECFLYSLLK 231

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F + + +    + ++      V  L+G+  QQ R   +      +  V I 
Sbjct: 232 NKQDLKIIIFVNMKITTLILSSLMKSFGIDVETLNGDQDQQARIEIIDGFIKNKYNVLIT 291

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRRA 356
           TDV +RG+D+ D++ VI+ +L  N ++ +HR GRT RAG+KG+++ ++ Q      Q+  
Sbjct: 292 TDVGSRGLDVCDVDFVINYDLPQNNKDYVHRVGRTARAGKKGVALTLVTQYDVSIFQKIE 351

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             L R+ N+    E     E I
Sbjct: 352 YFLNRKLNLFTFNENYHQFEEI 373


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTL 62
           F++ P+++ E + ++G+   + +Q       L  KD++  AQTG+GKT+AF L AL    
Sbjct: 228 FQHYPEILDE-IEKQGFKVPSPIQSQAWPILLSGKDLIGIAQTGTGKTLAFLLPALIHID 286

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDL 121
             +     P   P  L IAPTRELA+Q+  E++    K   +  +C+ G    RE+   +
Sbjct: 287 GQKIPGTKPRGGPNVLIIAPTRELALQIENEVKKYSYKN--IKCLCVYGGGNRREQINTV 344

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180
           Q G  I++ TPGRL D +    + +S +  +VLDEAD MLD+GF   I + +LD  P  R
Sbjct: 345 QEGVEIIIATPGRLNDLVNNSYITLSSITYIVLDEADRMLDMGFEPQIRKLLLDIRP-DR 403

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNI 238
           + +M SAT    +  LAK Y  + ++V I S +    HS +  R  ++   D+ + + +I
Sbjct: 404 QSVMTSATWPNDVQRLAKRYMSNPIQVFIGSLDLTAVHSVLQ-RVYIINEGDKKSYLFDI 462

Query: 239 LRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           LR         IVF   +      +  L+ + F    + G   Q +R  AL   + G  +
Sbjct: 463 LRNLKEEEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGREQMDREQALDDFKTGCVK 522

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           + IATDVA+RGID+ D+  V++ +  +N E  +HR GRTGRAG+ G ++ F    N    
Sbjct: 523 ILIATDVASRGIDISDITKVLNYDFPNNIEEYVHRVGRTGRAGKTGEAITFFTRSNWMHA 582

Query: 356 AE--RLFREANVSVVWEPAPSVEAIRERDAQR 385
            +   +  EAN SV  E    +  +RER  +R
Sbjct: 583 GDLISIMEEANQSVPIE----LYEMRERYLKR 610


>gi|260826097|ref|XP_002608002.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
 gi|229293352|gb|EEN64012.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
          Length = 430

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 176/355 (49%), Gaps = 26/355 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +  AL +RG  + T +Q   L   L  +D++  A TGSGKT      L      +N
Sbjct: 3   FPRGVIHALKKRGIHHPTPIQIQGLPAILSGRDMIGIAFTGSGKT------LKRLPFTKN 56

Query: 67  DRFSPASAPLALAIAPTRELAVQVGR-----------ELEWLY--AKTGVVVAVCIGGVS 113
           D       P +L I P+RELA Q  +           E  +LY      +   +CIGG S
Sbjct: 57  D------GPYSLIICPSRELARQTHQFITHNMISRSDEYHFLYPIGMPAMRTMLCIGGES 110

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              +    + G H++V TPGRL D +  K  N+   + +VLDEAD M+D+GF +DI  I 
Sbjct: 111 AKDQFEQSKRGVHMMVATPGRLMDMLNKKAFNLDTCRYLVLDEADRMIDMGFEEDIRTIF 170

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                +R+ L+FSAT+   I   A+      V VN+        D+      V    +  
Sbjct: 171 SYFKGQRQTLLFSATMPKKIQNFARTALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIV 230

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++  L+   +   ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G
Sbjct: 231 YLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTRAIEAFREG 289

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I
Sbjct: 290 KKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGIATTFI 344


>gi|255691833|ref|ZP_05415508.1| ATP-dependent RNA helicase [Bacteroides finegoldii DSM 17565]
 gi|260622556|gb|EEX45427.1| ATP-dependent RNA helicase [Bacteroides finegoldii DSM 17565]
          Length = 459

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 184/364 (50%), Gaps = 29/364 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   ND 
Sbjct: 21  EIIQSALHNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPGNDN 80

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++ +  N   I
Sbjct: 81  VQ------VLILVPSRELALQIDSVFKAM--GTAWKTCCCYGGHPIAEEKKSISGNHPAI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 133 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 192

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      VR+N   +  + Q S +    V     D+ + + N+L   
Sbjct: 193 TDAEEIPEFTGLNR-----TVRLNFLPDAADEQESRLKLMKVFSPAKDKVDTLYNLLCTL 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  K+LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 248 GSSSSIVFCNHRDAVDRVQKLLADKKLFAERFHGGMEQPDRERALYKFRNGSCHVLISTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV----------IPQNM 352
           +AARG+D+P++E +IH  L  N E   HR+GRT R    G S  +          IP++M
Sbjct: 308 LAARGLDIPEIEHIIHYHLPVNEEAFTHRNGRTARWDATGTSYLILHAEEKLPAYIPEDM 367

Query: 353 QRRA 356
           +  A
Sbjct: 368 ETVA 371


>gi|323453440|gb|EGB09312.1| hypothetical protein AURANDRAFT_895 [Aureococcus anophagefferens]
          Length = 591

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 204/395 (51%), Gaps = 41/395 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           +AL +RG   L  +Q A         KD+L  A+TG+GKT+AF L +   LL +    + 
Sbjct: 13  QALDKRGIKVLFPIQAATFAAIFDAGKDLLARARTGTGKTLAFALPVVEKLLLDK---AT 69

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHIVVG 130
             AP AL +APTRELA QV  +   +    G +  +C+ G S +    D L+ G  +VVG
Sbjct: 70  QRAPRALVLAPTRELAQQVLGDFSDV--AHGRLRTLCVYGGSAYGPSCDALRRGVDVVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPKKRRMLM 184
           TPGR  D I    L+ S L   VLDEAD+MLD+GF+D++E I        +  + R++L+
Sbjct: 128 TPGRTMDLIEKGVLDASALSFAVLDEADQMLDMGFKDELEKIFAAMAPAGAPARARQLLL 187

Query: 185 FSATISPAITTLAKNY-QKDAV--RVNIASEN-------------RQHSDIDYRAVLVAL 228
           FSAT+ P +  +AK Y Q DA    +++                 +  +D+ ++ V VA 
Sbjct: 188 FSATLPPWVRNIAKAYAQTDASLEAIDLVGSGGGDARDGLGGIVCQASTDVSHKCVPVAS 247

Query: 229 SDRDNAIVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              ++ ++N        +GA   ++FC T+A  +       E  ++  AL G++ Q  R 
Sbjct: 248 WSMNHKVINDVVGAYGLNGAARCVLFCETKAECNDVVDS-KEITYERRALHGDIPQALRE 306

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRA 338
             +   R G+ ++ +ATDVAARG+D+  +ELV++ +        ++ E  +HRSGRTGRA
Sbjct: 307 KTMAAFRAGQFKILVATDVAARGLDMV-VELVVNNKPPATRSGWADAETYVHRSGRTGRA 365

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           GRKG  V +     +   E + R+   +  W  AP
Sbjct: 366 GRKGTCVTLYQTKHRATLEEIERKTKNAFDWVGAP 400


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 14/373 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I + ++  G+   T +Q       L  +D++  A+TGSGKT+AF +     + A+ 
Sbjct: 219 LPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPAVIHINAQ- 277

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA+Q+  E +  + ++  +   C+ GG     + R LQNG 
Sbjct: 278 PYLQKGDGPIVLILAPTRELALQIKAECD-RFGRSSRITNTCVYGGTQRGPQARALQNGV 336

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +V+DEAD MLD+GF   +  I+      R+ LM+
Sbjct: 337 EICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRPDRQTLMW 396

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA++   ++ V V +        +I     +V  + +   ++ +++   A
Sbjct: 397 SATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLALMQAASA 456

Query: 245 KNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     ++FC T+      T++L    +  +++ G+  Q ER   L   + GR+ +
Sbjct: 457 ATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQFKTGRSAI 516

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ--NMQR 354
            IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G++  F  P    + R
Sbjct: 517 MIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSPDKGKLAR 576

Query: 355 RAERLFREANVSV 367
           +     REAN SV
Sbjct: 577 QLVNCLREANQSV 589


>gi|198476804|ref|XP_001357483.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
 gi|198137859|gb|EAL34553.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
          Length = 424

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 183/345 (53%), Gaps = 16/345 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA--SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
              PA  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L++
Sbjct: 104 --EPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAIQKDEETLKS 160

Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
           G  HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  SSP  ++
Sbjct: 161 GTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSSPHGKQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L 
Sbjct: 221 VMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVNLKENEKNKKLFELLD 280

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  +         +L E  F  + +   ++Q+ER N  Q  +D + R+ +A
Sbjct: 281 VLEFNQVVIFVKSVQRCVALAMLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVA 340

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 184/378 (48%), Gaps = 23/378 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  + +AL  +GY   T +Q       L+ KDV+  A+TGSGKT  F L   + ++AE
Sbjct: 92  KFPAALRKALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALAKIVAE 151

Query: 66  NDRFSP------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             + +P            A  P  + +APTRELA+Q+  E        G   AV  GG +
Sbjct: 152 GTQKAPEMQLVDGRWRPGAVTPSVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAA 211

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIR---GKGLNISHLKA--VVLDEADEMLDLGFRDD 168
              + R L++GA +VV TPGRL D +    G    +S +KA  VVLDEAD MLD+GF   
Sbjct: 212 KGDQLRALRSGADVVVATPGRLNDFLEPPPGFTAPVSAVKAAYVVLDEADRMLDMGFEPQ 271

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVL 225
           I+ I    P  R+ +MF+AT    +  +A  +    + + I S   +   +  I     +
Sbjct: 272 IKKIFKLCPSARQTVMFTATWPKGVQKIADAFTTKPIHIQIGSGGDKLTANKSITQTVEV 331

Query: 226 VALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQE 282
           V   ++ +  V IL+    KN   I+F  T+       + L +  F    ++ G+  Q E
Sbjct: 332 VEEEEKFDRCVAILKKELGKNETCIMFAGTKRRCDFLDRRLKQVGFSSAGSIHGDKDQYE 391

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R   L   R GR  + +ATDVAARG+D+P +  VI  +     E+ +HR GRTGRAG+ G
Sbjct: 392 REMVLDNFRRGRGNILVATDVAARGLDIPGVAAVIVYDFPLQVEDYVHRIGRTGRAGKDG 451

Query: 343 MSVFVIPQNMQRRAERLF 360
            +     ++ +  A  L 
Sbjct: 452 KAFTFFTKDNRGAANELI 469


>gi|58259399|ref|XP_567112.1| translation initiation factor [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107479|ref|XP_777624.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687330|sp|Q5KN60|IF4A_CRYNE RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|50260318|gb|EAL22977.1| hypothetical protein CNBA7450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223249|gb|AAW41293.1| translation initiation factor, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 401

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +D +  AQ+G+GKT  F +++   +       +      AL
Sbjct: 47  GFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRI------DTTVKKTQAL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    C+GG +V  +   L  G HIVVGTPGR+ D 
Sbjct: 101 VLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDM 160

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L    +    LDEADEML  GF++ I  I    P + ++++ SAT++P +  + K
Sbjct: 161 INRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTK 220

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  +      I    + V   + +   + ++        A++FCSTR  V
Sbjct: 221 KFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L +  F V A+ G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 281 DWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 340

Query: 318 HAELSSNPENLLH 330
           + +L S+ EN +H
Sbjct: 341 NYDLPSSKENYIH 353


>gi|157876832|ref|XP_001686758.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129833|emb|CAJ09139.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 657

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 198/367 (53%), Gaps = 10/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++     E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +     
Sbjct: 171 PHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRSG- 229

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F P++   A+ I PTREL +Q+ G  L+ L    G +    CIGG S ++E   L NG 
Sbjct: 230 -FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLANGI 288

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV +PGRL DH++     +  +L  + +DEAD +LD GF +D+  I+   PK R+  +
Sbjct: 289 MIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQTFL 348

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSD-RDNAIVNILRY 241
           FSAT +  +  LA+ ++ K  + +++ S+  + + D   +  +V  S+ R   + + ++ 
Sbjct: 349 FSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCTSEQRLLVLYHFVKK 408

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V   T
Sbjct: 409 NLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLFTT 468

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +   + L+
Sbjct: 469 DVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-ELFLKYLY 527

Query: 361 REANVSV 367
            +A V V
Sbjct: 528 DDAKVKV 534


>gi|87122371|ref|ZP_01078252.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
 gi|86162346|gb|EAQ63630.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Marinomonas sp. MED121]
          Length = 432

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 198/359 (55%), Gaps = 16/359 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+P  + ++++E  +   + +Q A L   L+  D++  AQTG+GKT AF +A+ S  +  
Sbjct: 59  NLPDRLLKSIAEMSFEYCSEIQAASLPETLQGYDLIGQAQTGTGKTAAFLIAMISDFIDY 118

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E +R S  +    L IAPTRELA+Q+  +   L   + + +   +GG+S  ++++ L+
Sbjct: 119 PIEEERDSRLAR--GLIIAPTRELALQIAEDAVKLTVNSDINIVSLVGGLSYEKQKQILE 176

Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KK 179
           N    IVV TPGRL D  R K + ++ ++A+VLDEAD ML +GF  D++ I+  +P  +K
Sbjct: 177 NERVDIVVATPGRLMDFARNKKVLLNKVEALVLDEADRMLSMGFIPDVKSIIRMTPHKEK 236

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I  LA+ +      V++  E   + +I+     V    +   + +++
Sbjct: 237 RQTMLFSATFPKDIQNLARQWTYFPKEVSVVPEETTNKNIEQVIYSVEADQKWPVLESLI 296

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  IVF + R       + L +       LSGE++Q +R   L   ++G+ +V +
Sbjct: 297 KEKDNQRTIVFANRRDETRDLYERLKDAGVNCAMLSGEVAQDKRVKTLANFKNGKIQVLV 356

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           ATDVA RGI +  +ELV++  L  +PE+ +HR GRTGR G  G SV        F++P+
Sbjct: 357 ATDVAGRGIHVDGIELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFMVPE 415


>gi|296333328|ref|ZP_06875781.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675167|ref|YP_003866839.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149526|gb|EFG90422.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413411|gb|ADM38530.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 438

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            +++E  P +I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L L  
Sbjct: 6   FELYELKPFII-DAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL- 63

Query: 61  TLLAENDRFSPASAPLALAI-APTRELAVQVGRE-LEWLYAKTGVVV-AVC-IGGVSVHR 116
                 ++  PA   + + I APTRELA Q+ +E L+    + G  + + C IGG    +
Sbjct: 64  ------NKIDPAKDVVQVVITAPTRELANQIHQEALKITQGEEGSQIRSKCFIGGTDKQK 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I    
Sbjct: 118 SIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFIADVDYIGSRM 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D  + 
Sbjct: 178 PEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLF 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D    
Sbjct: 238 DIMSHLNPYLGIVFANTKNTADHIAQYLTGKGLKIGLLHGGLTPRERKKVMKQINDLEFT 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 298 YVIATDLAARGIDIKGVSHVINYELPDDLDFYIHRVGRTARAGSSGQAMTI 348


>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 464

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 162/314 (51%), Gaps = 5/314 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +   L  KD++  AQTG+GKT  F L +   L     R   A  P +L
Sbjct: 20  GYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMIDILAHGRRR---ALMPRSL 76

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV    E       + +A+ IGGV +  + + LQ G  +++ TPGRL D 
Sbjct: 77  ILEPTRELAAQVAENFEKYGKNHDLKMALLIGGVQMGDQVKALQEGVDVLIATPGRLMDL 136

Query: 139 I-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
             RGK L ++  + +V+DEAD MLD+GF  DIE I    P  R+ L+FSAT+ P I  LA
Sbjct: 137 FERGKIL-LTGCEMLVIDEADRMLDMGFIPDIENICSKLPTTRQTLLFSATMPPPIKKLA 195

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             +  +   + +A     +++I    V      +   + ++LR      AI+F + + +V
Sbjct: 196 DKFLSNPKSIEVARPAATNTNIAQFKVRSTTRQKREVLRHLLRTDNVSTAIIFANRKTTV 255

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L  H F    + G++ Q  R+  LQ  +DG   +  A+DVAARG+D+  +  V 
Sbjct: 256 RELAKSLQRHGFAAGEIHGDMDQSARNAELQKFKDGEISILCASDVAARGLDVKGVSHVF 315

Query: 318 HAELSSNPENLLHR 331
           + +   +P++ +HR
Sbjct: 316 NFDTPWHPDDYVHR 329


>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
          Length = 572

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 2   NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 59

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  A +   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 60  ---YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 116

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD+MLD  F + ++ I+      R+ 
Sbjct: 117 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQT 176

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 177 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 232

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 233 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 292

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 293 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKM 352

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 353 LKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEM 401


>gi|159109746|ref|XP_001705136.1| DEAD box RNA helicase Vasa [Giardia lamblia ATCC 50803]
 gi|157433216|gb|EDO77462.1| DEAD box RNA helicase Vasa [Giardia lamblia ATCC 50803]
          Length = 449

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 179/338 (52%), Gaps = 28/338 (8%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLA----------ENDRFSPASAPLALAIAPTRELAV 88
           D+L ++QTGSGKT +F   + + L++          + +     S PLA+ ++PTREL  
Sbjct: 2   DLLATSQTGSGKTFSFLSPIIAQLISSRAKDAISDDDKNMEQSMSFPLAVILSPTRELTQ 61

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           Q+      L  KT ++V +  GG     +R  L+ G  IV+ TPGRL D +  + L++ +
Sbjct: 62  QIAFMCYQLTFKTNLIVRLVYGGEGAREQRGLLKKGCDIVIATPGRLKDFLERRCLSLKY 121

Query: 149 LKAVVLDEADEMLDLGFRD---DIEFILD---SSPK-KRRMLMFSATISPAITTLAKNYQ 201
           ++ +VLDEAD+MLD+GF     D+ +  D   + P   R+ LMFSAT    +  +AK Y 
Sbjct: 122 VRVMVLDEADKMLDMGFEPQIRDLVYKFDMPGNGPNGNRQTLMFSATFGTGVQAMAKRYL 181

Query: 202 KDAVRVNI------ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-----AIVF 250
            +  R+++       +  +Q  +      + ++  R + +++IL+  G+        ++F
Sbjct: 182 HNEARIHVGQIGSTTTMIKQQFEYFAETAIKSVDKRIDKLIHILKSPGSIPTASFLTLIF 241

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+  +      L     +V  + G+L Q+ER N L+  +DG+  V +ATDVA RGID+
Sbjct: 242 VETKKDIGYIITKLLNAGLRVCEMHGDLEQRERQNNLKSFKDGKTPVLVATDVAQRGIDI 301

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ +   + +  +HR GRTGRAG +G++   I
Sbjct: 302 GAIRHVINFDFPKDIDTYIHRIGRTGRAGAEGLATSFI 339


>gi|125586856|gb|EAZ27520.1| hypothetical protein OsJ_11472 [Oryza sativa Japonica Group]
          Length = 394

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 174/330 (52%), Gaps = 21/330 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +       +      AL
Sbjct: 50  GFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIV------DTAVREVQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H+V GTPGR+CD 
Sbjct: 104 ILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 164 IKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 224 KFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 281

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV+          L
Sbjct: 282 KVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVS----------L 331

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 332 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 361


>gi|213409972|ref|XP_002175756.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003803|gb|EEB09463.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 572

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 203/363 (55%), Gaps = 17/363 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F ++P  +    A+ + GY  +T VQ   + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 83  ELFTDLPLSEKTLNAIKDIGYEKMTEVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 142

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHR 116
            TL +   +F P +    + ++PTRELA+Q   V +EL   + +T     + IGG +   
Sbjct: 143 ETLYSL--KFKPRNGTGVIIVSPTRELALQIFGVAKELLKYHHQT---FGIVIGGANRRA 197

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           E   L  G +++V TPGRL DH++  KG    +L+++++DEAD +L++GF D++  I   
Sbjct: 198 EADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLIIDEADRILEIGFEDEMRQIAKV 257

Query: 176 SP-KKRRMLMFSATISPAITTLAK-NYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRD 232
            P + R+ ++FSAT +  +  LA+ + +   + +N+ A ++   +D   +  +V  SD+ 
Sbjct: 258 LPSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDAGKDTSTADGLEQGYVVVESDKR 317

Query: 233 NAIV-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             ++ + L+ +  K  IVF S+ ASV    ++L      V+ L G+  QQ R+N      
Sbjct: 318 FLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFC 377

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMS-VFVIP 349
           +    + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S +F+ P
Sbjct: 378 NAEKGIMLCTDVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGAKGKGRSLIFLTP 437

Query: 350 QNM 352
             +
Sbjct: 438 SEL 440


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 188/362 (51%), Gaps = 10/362 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           IF+   QV    ++ R +   T +Q   +   ++  DV+  A TG+GKT AF L +   L
Sbjct: 5   IFDFHHQVTAGVVAAR-FRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPILHRL 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    R        AL IAPTRELA Q+   +  L ++TG+      GGV  + +   L+
Sbjct: 64  MQGERR-----QVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDKLK 118

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IVV  PGRL DH+    +++S+L+ +VLDE+D M D+GF  DI  I+   P +R+ 
Sbjct: 119 RGAEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTERQT 178

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA    K  V V + +      ++ +R   +    +   ++ +LR+ 
Sbjct: 179 LLFSATMPDDILHLAHEVLKAPVTVQVNNIGPA-INVSHRLYPIKQHLKTALLLELLRHT 237

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ ++F  T+    R  + L +  ++  +L G LSQ  R   +   R+G  ++ +ATD
Sbjct: 238 NTESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILVATD 297

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           +AARGID+  +  VI+ ++    +   HR GRTGR  + G +   I    ++M RR E +
Sbjct: 298 IAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRIENV 357

Query: 360 FR 361
            R
Sbjct: 358 LR 359


>gi|228991148|ref|ZP_04151107.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
 gi|228768561|gb|EEM17165.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
          Length = 389

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 185/350 (52%), Gaps = 9/350 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     + +  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMETVFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++  +   V I       S +++  ++    ++++ I  ++ + 
Sbjct: 175 VFFSATMTKDAEEVARDFAVEPELVRI-KRTETKSLVEHTYIVCERREKNDYIRRVM-HT 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +    + L     +  AL  E ++QER   ++  R G+  + +ATD
Sbjct: 233 GNVKAVAFLNDPYRLDEIAEKLKYRKMKAAALHAEANKQEREATMRAFRQGKIEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V  V PQ 
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQE 342


>gi|242822575|ref|XP_002487915.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218712836|gb|EED12261.1| eukaryotic translation initiation factor 4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 397

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  S   A  AL
Sbjct: 43  GFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSISA----LQKID--SSLKACQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 157 IQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 277 DWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 337 NYDLPANRENYIH 349


>gi|110737546|dbj|BAF00715.1| DRH1 DEAD box protein - like [Arabidopsis thaliana]
          Length = 450

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 177/316 (56%), Gaps = 12/316 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           ++ +D++  A+TGSGKT+  G  +   +  +         P  L ++PTRELA Q+  ++
Sbjct: 1   MQNRDIVAIAKTGSGKTL--GYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQI--QV 56

Query: 95  EWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAV 152
           E L + K+  +   C+ GG     + ++++ G  IVV TPGRL D +  K +++  +  +
Sbjct: 57  EALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYL 116

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS- 211
           VLDEAD MLD+GF   I  I++  P KR+ LM++AT    +  +A +   +  +VNI + 
Sbjct: 117 VLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNV 176

Query: 212 -ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHL 268
            E   +  I     ++A  ++ + +  ILR    G+K  I+FCST+    +  + L    
Sbjct: 177 DELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK-IIIFCSTKRMCDQLARNLT-RT 234

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F   A+ G+ SQ ER + L   R GR  V +ATDVAARG+D+ D+ +V++ +  +  E+ 
Sbjct: 235 FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 294

Query: 329 LHRSGRTGRAGRKGMS 344
           +HR GRTGRAG  G++
Sbjct: 295 VHRIGRTGRAGATGLA 310


>gi|85107121|ref|XP_962312.1| hypothetical protein NCU07670 [Neurospora crassa OR74A]
 gi|21552987|gb|AAM62413.1|AF497975_1 CYT-19 DEAD-box protein precursor [Neurospora crassa]
 gi|28923915|gb|EAA33076.1| predicted protein [Neurospora crassa OR74A]
          Length = 626

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 195/388 (50%), Gaps = 45/388 (11%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + + EN+ + I   +   GY N+T VQ   ++P L+ KD++  A+TG+GKT+ F + +  
Sbjct: 79  LGVHENVVRAITHGM---GYENMTEVQSMTISPALKGKDIVAQAKTGTGKTLGFLVPVIQ 135

Query: 61  TLLAEN----DRFSPASAP----LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            ++ ++     RF    A      A+ I+PTRELA Q+G E   L   TG++V   +GG 
Sbjct: 136 KIITQDPDLAHRFGGKRARSDDIRAIIISPTRELAEQIGEEARKLVKGTGIIVQTAVGGT 195

Query: 113 S----VHRERRDLQNGAHIVVGTPGRLCDHIRGK--GLNISHLKAVVLDEADEMLDLGFR 166
                +++ R   Q G HI+VGTPGRL D +     G++   L  +VLDEAD ML++GF 
Sbjct: 196 QKNAMLYKTR---QQGCHILVGTPGRLNDLLSDSHSGIDAPRLSTLVLDEADRMLEVGFN 252

Query: 167 DDIEFILDSSPKK----RRMLMFSATISPAITTLAKNY----QKDAVRVNIASENRQHSD 218
           +++  I++  P +    R+ L++SATI   +  LA++Y      + V+   A E   H  
Sbjct: 253 EELRQIINYLPDRKVLPRQTLLYSATIPKDVVGLARSYIDKNNFEFVQTVKADEVLTHDR 312

Query: 219 ID--------YRAVLVALSDRDNAIVNILRYHGAK---NAIVFCSTRASVSRFTKVLA-- 265
           I         +  +  A+ +     +N  R +       AIVF  T A V     +    
Sbjct: 313 IPQYIVPCKGFENIYPAMLELIEKALNESRTNPEALPFKAIVFLPTTAEVIMANAIFKRL 372

Query: 266 ----EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
               +H+ +   +  +L+Q  R+ A    ++ R  +  ++DV ARG+D P++  VI   +
Sbjct: 373 QWKFKHIPKTWDIHSKLTQNARTRAADEFKNARTGILFSSDVTARGMDFPNVSHVIQTHI 432

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIP 349
             N E  +HR GRTGRA + G    ++P
Sbjct: 433 PPNREQYIHRLGRTGRANKPGQGWLIVP 460


>gi|52079209|ref|YP_078000.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52784575|ref|YP_090404.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|319647011|ref|ZP_08001237.1| YfmL protein [Bacillus sp. BT1B_CT2]
 gi|52002420|gb|AAU22362.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52347077|gb|AAU39711.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|317390835|gb|EFV71636.1| YfmL protein [Bacillus sp. BT1B_CT2]
          Length = 376

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 112/370 (30%), Positives = 197/370 (53%), Gaps = 13/370 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+ + T+VQ+  ++  L  +DV+  + TG+GKT+A+ L +   L A+     
Sbjct: 15  IQENWKASGFQDPTNVQKNAVDLILDGRDVIAESPTGTGKTLAYVLPILEKLEADQKNVQ 74

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 A+ +AP+REL +Q+   + EW    + +  A  IGG ++ +++  L+   HI+ 
Sbjct: 75  ------AVILAPSRELVMQIFDVIVEWKKG-SDIRAASLIGGANIKKQQEKLKKHPHIIA 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + I+ K L +  +K +VLDE D +L    R  I+ I+ S+ + R++L FSAT+
Sbjct: 128 GTPGRVFELIKMKKLKMHEVKTIVLDETDHLLTPEHRGTIQSIIKSTLRDRQLLCFSATL 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
                   +   KDA  + I     + + + ++ ++    D+   +    R  G + A+V
Sbjct: 188 KDDAERELREMTKDAEVLKIKRSKEESAKVKHQFLVCDQRDKVKILQKFSRLPGMQ-ALV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F     +++ + + L  H  ++  L  E  + ER+  LQ    G   + +ATD+AARGID
Sbjct: 247 FVKDIGNLNVYAEKLKFHHVEIGVLHSEAKKIERAKILQAFEAGEFTLLLATDIAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS--- 366
           + DL  VIHA+L  N E  +HRSGRTGRAG +G  + ++ +  + R ++L ++  +    
Sbjct: 307 IEDLPYVIHADL-PNVEGYIHRSGRTGRAGNEGTVISLVNRIEEERLKKLAKKLEIPLQR 365

Query: 367 VVWEPAPSVE 376
           +V+E    +E
Sbjct: 366 IVYERGRIIE 375


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 16/334 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDRFSPASAPL 76
           G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +  + R      P 
Sbjct: 180 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM----GPT 235

Query: 77  ALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGR 134
            L ++PTRELA Q+  ++E L + K+  +   C+ GG     + ++++ G  IVV TPGR
Sbjct: 236 ILVLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 293

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++AT    + 
Sbjct: 294 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 353

Query: 195 TLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVF 250
            +A +   +  +VNI +  E   +  I     ++A  ++ + +  ILR    G+K  I+F
Sbjct: 354 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSK-IIIF 412

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           CST+    +  + L    F   A+ G+ SQ ER + L   R GR  V +ATDVAARG+D+
Sbjct: 413 CSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDV 471

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 472 KDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 505


>gi|28278797|gb|AAH45237.1| LOC444845 protein [Xenopus laevis]
          Length = 404

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 49  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ+ A HI+VGTPGR+ D
Sbjct: 103 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHIIVGTPGRVFD 162

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 163 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVLLSATMPADVLEVT 222

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 223 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 282

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 283 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 342

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 343 INYDLPTNRENYIH 356


>gi|152964826|ref|YP_001360610.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359343|gb|ABS02346.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 590

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 186/360 (51%), Gaps = 3/360 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL  RG     ++Q   L   +  +D+L  A+TGSGKT+ FGL + + L A+
Sbjct: 152 GLPEELVAALERRGMTAPFAIQSRTLPDGIAGRDILGRARTGSGKTLGFGLPMLARL-AQ 210

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA+QV   L  L     + ++V +GGV   R+   LQ G 
Sbjct: 211 QKRPRITGAPRGLVLVPTRELAMQVADALRPLGDSLDLRLSVVVGGVPYGRQIAALQRGI 270

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D I    ++++ +   VLDEAD M DLGF  ++  IL+ +    + + F
Sbjct: 271 DVLIATPGRLVDLIDRDAVSLAEVDVAVLDEADHMADLGFLPNVRAILEGTKPGGQRMFF 330

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L  ++  D       ++      +++R   V   D+ + +  I +     
Sbjct: 331 SATLDRGVEALVTDFLTDPAFHAAPADPDDVGHMEHRVFAVRPHDKLSILTEISKR--PA 388

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I F  T+    R    L E      A+ G+L Q +RS A+     G  RV +ATDVAA
Sbjct: 389 RSIFFVRTKLGAQRLADQLNEAGAPAEAIHGDLRQSQRSKAIDAFSAGETRVLVATDVAA 448

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D++LV+H +  ++ ++ LHRSGRT RAG  G  + +   +  RR   L R+A V
Sbjct: 449 RGIHVDDVDLVVHVDPPNDHKDYLHRSGRTARAGATGTVLAIALPDQVRRYGWLHRDAGV 508


>gi|74694962|sp|Q75C76|DBP4_ASHGO RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 763

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 15/360 (4%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P   G  + L E  Y+ +T +Q A +   L+  DVL +A+TGSGKT+AF + +   
Sbjct: 43  FQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEK 102

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   +
Sbjct: 103 LYHE--RWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERV 160

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  +I++GTPGRL  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 161 -SKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSR 219

Query: 181 RMLMFSATISPAITTLAK----NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNA 234
           + L+FSAT S ++  LA+    +Y+        +S+N+  +  +++   + VAL D+ + 
Sbjct: 220 QTLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDI 279

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRD 292
           + + ++ H     IVF S+   V    +     +    ++ L G   Q  R+  L     
Sbjct: 280 LFSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSR 339

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
            +     +TDV ARGID P ++ VI  +   + +  +HR+GR+ R G+ G S+ ++ PQ 
Sbjct: 340 AQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQE 399


>gi|332668100|ref|YP_004450888.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336914|gb|AEE54015.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 443

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 174/338 (51%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + L+  G ++L  +QE  L     E ++++ A TGSGKT+AF L +   L  + DR  
Sbjct: 7   LADTLANLGIISLNEMQEQALQSIPAEPNLMLLAPTGSGKTLAFLLPILELL--QPDR-- 62

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P      L ++PTRELA+Q+ R   W    TG  V  C GG  +  E R+L     +++G
Sbjct: 63  PGVQ--CLVLSPTRELAIQIERV--WQKMATGYKVNTCYGGHPMQIEIRNLSQAPALLIG 118

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ +H+  K   + +L  +VLDE D+ L +GF++ +E I++  P   + ++ SA+  
Sbjct: 119 TPGRIIEHLHRKSFELENLHILVLDEFDKCLSMGFQEQMEQIVEGIPHLEKRILVSASNE 178

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +I           +     +E++    +  +AV+    DR  A+  +L   G +  +VF
Sbjct: 179 QSIPKFTGIVAPKVLDYT-NTEDKSTDGLQVKAVMAKDEDRIAALYELLCTLGQEQTLVF 237

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ R +  R    L +   Q     G + Q +R   L   R+G   V +++D+AARG+D+
Sbjct: 238 CNQRDATERVVSALRDLGLQSSFFHGGMEQLDREKTLVQFRNGSIVVLVSSDLAARGLDI 297

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P++  VIH EL     +  HR+GRT R   +G +  ++
Sbjct: 298 PEVRNVIHFELPDRASDFGHRNGRTARMHNEGTAFLIL 335


>gi|328552365|gb|AEB22857.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910714|gb|AEB62310.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 376

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 184/339 (54%), Gaps = 10/339 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+   T +QE      +  KDV+  + TG+GKT+A+ L +        +R +
Sbjct: 15  IAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVL-------ERIN 67

Query: 71  PASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P    P  + +AP+REL +Q+ + ++     + +     IGG +V ++   L+N  HI+ 
Sbjct: 68  PEQKHPQVIILAPSRELVMQIFQVIQDWKKGSDLRALSLIGGANVKKQVEKLKNKPHIIA 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ + R++L FSAT+
Sbjct: 128 GTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKEHRETMKKIIKTTLRDRQLLSFSATL 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P    +      +   + +     + + + ++ ++    D+   +  + R +G  +A+V
Sbjct: 188 QPETEEVLNAIAHEPSVLRVKRNTEEKARVTHQYLVCDQRDKVKLLQKLSRLNGM-HALV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F     ++S + + LA H   +  L GE  + ER+N L     G   + +ATD+AARG+D
Sbjct: 247 FVRDIGNLSVYAEKLAYHHVGLGILHGEAKKMERANILSAFERGEFPLLLATDIAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + DL  VIHA++  N +  +HRSGRTGRAG++G  + ++
Sbjct: 307 IDDLPYVIHADI-PNEDGYIHRSGRTGRAGKEGTVLSLV 344


>gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
 gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
          Length = 411

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 182/342 (53%), Gaps = 4/342 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A+   GY   TS+Q+  +   L  ++++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPILEKLSQGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             A A   + + PTRELA+QV + +E       +      GGV    +++ L  G  IVV
Sbjct: 72  KRARA---IILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVDIVV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FSAT+
Sbjct: 129 STPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +     +V
Sbjct: 189 SNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQVLV 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++
Sbjct: 309 IDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKD 350


>gi|302306975|ref|NP_983443.2| ACR040Wp [Ashbya gossypii ATCC 10895]
 gi|299788776|gb|AAS51267.2| ACR040Wp [Ashbya gossypii ATCC 10895]
          Length = 763

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 15/360 (4%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P   G  + L E  Y+ +T +Q A +   L+  DVL +A+TGSGKT+AF + +   
Sbjct: 43  FQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEK 102

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   +
Sbjct: 103 LYHE--RWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMERV 160

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  +I++GTPGRL  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 161 -SKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSR 219

Query: 181 RMLMFSATISPAITTLAK----NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNA 234
           + L+FSAT S ++  LA+    +Y+        +S+N+  +  +++   + VAL D+ + 
Sbjct: 220 QTLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDI 279

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRD 292
           + + ++ H     IVF S+   V    +     +    ++ L G   Q  R+  L     
Sbjct: 280 LFSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSR 339

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
            +     +TDV ARGID P ++ VI  +   + +  +HR+GR+ R G+ G S+ ++ PQ 
Sbjct: 340 AQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQE 399


>gi|255081336|ref|XP_002507890.1| predicted protein [Micromonas sp. RCC299]
 gi|226523166|gb|ACO69148.1| predicted protein [Micromonas sp. RCC299]
          Length = 631

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 179/342 (52%), Gaps = 17/342 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L  +G  +L S+Q     P L  KD++  A+TG GKT+AF L +   +  E
Sbjct: 32  NLSKEVCARLETKGITSLYSIQAQCFQPILDGKDLVGRARTGCGKTLAFVLPIVEVINRE 91

Query: 66  NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           N    PAS        P+   +APTRELA QV  + + +    G+      GG     + 
Sbjct: 92  NPM--PASGRRVQGRRPVVALLAPTRELAKQVHSDFQHIGQAFGLTSICVYGGAPYGEQE 149

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IV+GTPGR+ DH+  K L+   L+  VLDEADEML++GF +DIE IL+ +  
Sbjct: 150 RALRQGCDIVIGTPGRVKDHLDRKTLSFEKLRFRVLDEADEMLNMGFVEDIETILNHAKD 209

Query: 179 KRRM--LMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVAL--SDRDN 233
              +  ++FSAT+   +  ++K +       +++  + +Q +    + +L+    S+R +
Sbjct: 210 NANLQTVLFSATLPKWVADISKRFLVPGYTTIDLVGDEKQKASGSVQHMLINCQWSERTD 269

Query: 234 AIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMM 290
            + +++R    G    IVFC T+       + L + L +   AL G+++Q +R   L   
Sbjct: 270 LVCDLIRAKVPGDGRVIVFCDTKRDCGELQEALQKELEKGAKALHGDVNQSQREVVLDGF 329

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           R  + +  +ATDVAARG+D+  +ELV+  E     E  +HRS
Sbjct: 330 RKNKFQTLVATDVAARGLDISGVELVVQCEPPKEAETYIHRS 371


>gi|309266557|ref|XP_003086787.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Mus
           musculus]
 gi|309269288|ref|XP_003084847.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 2
           [Mus musculus]
 gi|148694445|gb|EDL26392.1| mCG15236 [Mus musculus]
          Length = 620

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 190/361 (52%), Gaps = 10/361 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P+V+ E +   G+   T +Q       L+  D++  AQTG+GKT+++   +   + 
Sbjct: 221 FQSYPEVM-ENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSY--LMPGFIH 277

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            ++      + P  L + PTRELA+QV  E E      G + +VC+ GG     + +D+ 
Sbjct: 278 LDSQPLEQRNGPGMLVLTPTRELALQV--EAECSKYSYGDLKSVCVYGGGDRDGQIQDVS 335

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRR 181
            G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P  R+
Sbjct: 336 KGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQ 394

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
            +M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I   L 
Sbjct: 395 TIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLE 454

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ I
Sbjct: 455 NMSPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILI 514

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R A  L
Sbjct: 515 ATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATEL 574

Query: 360 F 360
            
Sbjct: 575 I 575


>gi|121708606|ref|XP_001272186.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143019610|sp|A1CIQ5|HAS1_ASPCL RecName: Full=ATP-dependent RNA helicase has1
 gi|119400334|gb|EAW10760.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 625

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/376 (31%), Positives = 205/376 (54%), Gaps = 17/376 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L A   RF P 
Sbjct: 156 KAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSAL--RFKPR 213

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    L ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 214 NGTGVLVVSPTRELALQIFGVARELCQHHSQT---YGIVIGGANRRAEAEKLMKGVNLLI 270

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
            TPGRL DH++  +G    +LK +V+DEAD +L++GF D++  I+   P ++R+ ++FSA
Sbjct: 271 ATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSA 330

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS ++      V+     R   + + L+ + 
Sbjct: 331 TQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNL 389

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I TDV
Sbjct: 390 KKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICTDV 449

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  + Q  +    +  +E
Sbjct: 450 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFL-QPSEVGFLKHLKE 508

Query: 363 ANVSVVWEPAPSVEAI 378
           A V VV    P+ + +
Sbjct: 509 ARVPVVEFEFPASKIV 524


>gi|269796644|ref|YP_003316099.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098829|gb|ACZ23265.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 512

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 4/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   L++ G      +Q A L   L  +DVL   +TGSGKT+AF L    T LA +
Sbjct: 18  LPAPIISYLADNGIAAPFPIQSATLGDTLEGRDVLGRGRTGSGKTLAFSLPTV-TRLAAD 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P  L + PTRELA Q+   +E L    G+      GGV+  R+   LQ G  
Sbjct: 77  GGRRRPARPRGLVMCPTRELANQINATMEPLAKLLGLKTTTIFGGVAQSRQVTALQGGVD 136

Query: 127 IVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+  PGRL D + G+GL ++  ++  VLDEAD M DLGF   ++ I+D +P K + L+F
Sbjct: 137 IVIACPGRLED-LLGQGLLSLDDVEITVLDEADHMADLGFLPGVKRIMDRTPSKGQRLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K Y       ++ S +   S + +    VA +     ++  L   G  
Sbjct: 196 SATLDNGVDQLVKRYMDAPTSHSVDSADSHVSTMSHHIFEVADAAAKRDVIREL-ASGVD 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K L       V L G L Q  R   L+    G  +V +ATD+AA
Sbjct: 255 KRVLFTRTKHQAKKLAKQLTADGIPAVDLHGNLGQGARERNLEAFSSGAVKVLVATDIAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + ++ LV+H +  +  +   HRSGRT RAG  G  V ++    +     L R+A +
Sbjct: 315 RGIHVDEVSLVVHVDPPAEHKAYTHRSGRTARAGSGGDVVTIMLPEQRGDVRDLTRQAKI 374

Query: 366 S 366
           +
Sbjct: 375 N 375


>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
 gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
          Length = 412

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 25  VLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVLEKL--RQGQT 82

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 83  QRKKRVRALILVPTRELAMQVAEKVEQYGQDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 143 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK    D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 203 SRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 263 FIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 323 IDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFK 367


>gi|320458658|dbj|BAJ69279.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 738

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 182/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSLGEIAMEEFRNEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D     + S   +   + +        D+   +  
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDPKVHEVDSATTEPDLMTHHVFETTRGDKHELVRT 288

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +    G +  I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 289 LASGEGRR--ILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 183/345 (53%), Gaps = 8/345 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P+++ + + + GY   T VQ+  +   ++++D++  AQTGSGKT A+ + + + L+ E  
Sbjct: 313 PKIL-DNIKKSGYTQPTPVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPIINRLIEEGC 371

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P A+ + PTRELA+Q+ +E       T +   V  GGV+   +   +++G
Sbjct: 372 AASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDTIIKPVVVYGGVAPRYQSDKVKSG 431

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--R 180
            +I+VGTPGRL D +     N S  K +VLDEAD MLD+GF  +++ ++   + P K  R
Sbjct: 432 CNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMGFMGEVKKVVYHGTMPVKVER 491

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             LMFSAT    +  LA  + ++ + V + +      D+    + +    R + ++ IL 
Sbjct: 492 NTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEIDAKSRIDRLLEILT 551

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF S++ +      +L+       ++ G+  Q +R   L+  + G   + +A
Sbjct: 552 EKEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFKSGHRNILVA 611

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           T VAARG+D+  + LVI+ EL ++ +  +HR GRTGR G  G ++
Sbjct: 612 TAVAARGLDIKGVGLVINYELPTDIDEYVHRIGRTGRLGNTGHAI 656


>gi|29427914|sp|Q921N6|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
          Length = 760

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 212/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 247

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  A +   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 248 ---YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 304

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD+MLD  F + ++ I+      R+ 
Sbjct: 305 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQT 364

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 420

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 421 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 480

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 481 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKM 540

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 541 LKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEM 589


>gi|238484739|ref|XP_002373608.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
 gi|220701658|gb|EED57996.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           flavus NRRL3357]
          Length = 439

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P      A
Sbjct: 43  GFERPSAIQQRAIKPIIKGSDVIAQAQSGTGKTATFSISALQKL-------DPNVKGCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + L  G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVVAIGDFMNITCHACIGGTAVREDMKALGEGPEVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L   HLK  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRVLKTDHLKQFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 336 INYDLPANRENYIH 349


>gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia
           guttata]
          Length = 770

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 19/372 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 185 NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI-- 242

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 243 ---YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRS 299

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 300 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQT 359

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 360 MLFSATMTEEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 415

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D + 
Sbjct: 416 TALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQI 475

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAG+ G SV ++ +  ++ 
Sbjct: 476 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKM 535

Query: 356 AERLFREANVSV 367
            + + + A   V
Sbjct: 536 LKEIVKTAKTPV 547


>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 939

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 171/334 (51%), Gaps = 5/334 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   GY   T +Q       L  +DV+  A+TGSGKT+AF L +   L     + S
Sbjct: 16  IIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQRLGC---KHS 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L ++PTREL +Q  R +     KT + +    GG S+ R+  +L     IV+ 
Sbjct: 73  TIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFENLSGNPDIVIA 132

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRLC HI    L++S +  +VLDEAD + + G    I+ I+   P  R+ ++ SAT+ 
Sbjct: 133 TPGRLCHHIVEAKLSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCILVSATMP 192

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--AI 248
             + + ++    +   + + S++     +    +     D+   ++ +LR     N   +
Sbjct: 193 TGLVSFSRAKLVEPEFIRLDSDHLISDTLKLIFIFTREDDKLATLLYLLRVTIPHNERVM 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+T+  V    K+L E    + ++ G + Q  R+  L   R  + RV I TD+AARG+
Sbjct: 253 VFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVTDIAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+P LE VI+ +   + +  +HR+GRTGRAG+ G
Sbjct: 313 DIPLLENVINFDYPLSAKLFVHRTGRTGRAGKMG 346


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 193/385 (50%), Gaps = 18/385 (4%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IP  I   L + +G V  T +Q   L      +D++  A TGSGKT+ F L L    L  
Sbjct: 189 IPSAIVSYLKNTKGIVKPTPIQVQGLPTAFSGRDMIGIAFTGSGKTLVFILPLVMLALEA 248

Query: 66  NDRFS--PASAPLALAIAPTRELAVQV---GRELEWLYAKTG---VVVAVCIGGVSVHRE 117
             R        P+ L + P+RELA Q     +EL     ++G   + V +C+GG+S+  +
Sbjct: 249 ETRLPWIQGEGPVGLILCPSRELARQTYDFTKELCEALEQSGYPSIRVLLCMGGISMAEQ 308

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ GAHIVV TPGRL D +     N+++ K + +DEAD M+D+GF DD+  I+    
Sbjct: 309 GSVLRAGAHIVVATPGRLQDMLEKNKFNLNNCKYLCMDEADRMIDMGFEDDVRNIMSFFK 368

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V VN+      + D+      V    +   ++ 
Sbjct: 369 SQRQTLLFSATMPKKIQNFAKSALISPVVVNVGRAGAANLDVIQEVEYVKQEAKMVYLLE 428

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+       +VF   +  V    + L     + VA+ G   Q+ER  A++  +  +A V
Sbjct: 429 CLQ-KTPPPVVVFAENKNDVDDIHEYLLLKGIEAVAIHGSKDQEEREFAIKSFKACKADV 487

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA- 356
            +ATDVA++G+D   ++ VI+ ++    E+ +HR GRTGR+G+ G++   I +N   +  
Sbjct: 488 LVATDVASKGLDFSMIQHVINYDMPKEIEDYVHRIGRTGRSGKTGVATTFINRNSSEQIL 547

Query: 357 ---ERLFREANVSVVWEPAPSVEAI 378
              + L REA   V     P +EAI
Sbjct: 548 LDLKYLLREAKQRV----PPVLEAI 568


>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 449

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GGV+    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca]
          Length = 457

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 177/346 (51%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +  R    +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|194043658|ref|XP_001927639.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Sus scrofa]
          Length = 669

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 189/345 (54%), Gaps = 8/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P +
Sbjct: 192 AIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVKL-RFMPRN 249

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q    L+ L         + +GG +   E + L NG +IVV TPG
Sbjct: 250 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIVVATPG 309

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT +  
Sbjct: 310 RLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRK 369

Query: 193 ITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +V
Sbjct: 370 VEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMV 429

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S+  SV    ++L      V+A+ G   Q +R+       +  + + + TDVAARG+D
Sbjct: 430 FFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLD 489

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 IPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 534


>gi|213692508|ref|YP_002323094.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523969|gb|ACJ52716.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 722

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 182/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 36  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSLGEIAMEEFRNEIKRRKK 95

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 96  ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 154 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 213

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D     + S   +   + +        D+   +  
Sbjct: 214 DAQHML-FSATLDHGVDEVVNTFLHDPKVHEVDSATTEPDLMTHHVFETTRGDKHELVRT 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +    G +  I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 273 LASGEGRR--ILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 330

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 331 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 390

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 391 RLLNQAGIKTKMIEVTHDSPEV 412


>gi|156057455|ref|XP_001594651.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980]
 gi|160395529|sp|A7EGL7|IF4A_SCLS1 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|154702244|gb|EDO01983.1| eukaryotic initiation factor 4A [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 398

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 12/347 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L        P      A
Sbjct: 44  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKL-------DPNVKQCQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 97  LILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +         I    + V   D + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           I+ +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 337 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 383


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 194/376 (51%), Gaps = 16/376 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L  A   +  
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY-LLPAIVHINH 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G
Sbjct: 159 QPFLERGDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 218 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 277

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +SAT    +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++    
Sbjct: 278 WSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIM 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IA
Sbjct: 338 SEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIA 397

Query: 301 TDVAARG------IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           TDVA+RG      +++ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N++
Sbjct: 398 TDVASRGLAFYKLVNVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK 457

Query: 354 RRAE--RLFREANVSV 367
           + ++   + REAN ++
Sbjct: 458 QVSDLISVLREANQAI 473


>gi|325570266|ref|ZP_08146132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156749|gb|EGC68923.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 448

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 179/338 (52%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+++ + N T VQE ++    + + V+  +QTGSGKT  F L L   + AE D   
Sbjct: 12  IYEALADKKFSNPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLMDKIDAEKDEVQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+ +  + +  +    + V+  +GG    R+   LQN   H+
Sbjct: 72  ------VVITAPSRELATQIYQAAKQIGGFHDPEIRVSNFVGGTDKQRQLSRLQNQQPHV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGR+ D I  + L +      V+DEAD  LD+GF ++++ I    P+K +ML+FSA
Sbjct: 126 VIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEKLQMLVFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y  + +   I S+      I+   +     + +  I  +L       A
Sbjct: 186 TIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQLLTTGHPYLA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T++ V   T  L E   +V  + G++S +ER   ++ +++   +  +ATD+AARG
Sbjct: 246 IVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQYVVATDLAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +  VI+AE+ ++ +  +HR GRTGR    G ++
Sbjct: 306 IDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAI 343


>gi|281206116|gb|EFA80305.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 858

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 182/363 (50%), Gaps = 26/363 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ GY   + +Q   +   L  +DVL  A+TGSGKT AF + +   +  + 
Sbjct: 439 LPREILEAIAKMGYEKPSPIQMQAIPIALWGRDVLGIAETGSGKTAAFVIPMLVYISKQP 498

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             ++ + A  P AL +APTRELA+Q+ +E        G      +GG  +  +   L  G
Sbjct: 499 RLNKETEADGPYALVMAPTRELALQIEKEARNFANHFGFRCVALVGGQPIEDQIFQLSKG 558

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
             IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF   +  +LD+ P       
Sbjct: 559 CEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADLMIDMGFEPQVVSVLDAMPSSFLKSE 618

Query: 180 ----------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
                           R  +++SAT+ P +  L++ Y + AV V I    +    I    
Sbjct: 619 NEEEAEKQETDANRIYRTTILYSATMPPKVERLSRKYLRRAVHVIIGEAGKAVDRIKQNV 678

Query: 224 VLVALSDRDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           V V  SD D    ++++L        I+F + +      +++++E      +L    SQ 
Sbjct: 679 VFVK-SDHDKRVQLMDLLSNGPPPPIIIFVNKKKHCEIISEIVSECGMTSTSLHSSRSQD 737

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   +  R  V IATDVA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG +
Sbjct: 738 QREMALDGFKRRRYNVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGRTGRAGME 797

Query: 342 GMS 344
           GM+
Sbjct: 798 GMA 800


>gi|148233734|ref|NP_001085314.1| eukaryotic translation initiation factor 4A1 [Xenopus laevis]
 gi|46329822|gb|AAH68800.1| LOC443739 protein [Xenopus laevis]
 gi|76780122|gb|AAI06280.1| LOC443739 protein [Xenopus laevis]
          Length = 406

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 51  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ+ A HIVVGTPGR+ D
Sbjct: 105 VLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTNVRAEVQKLQSEAPHIVVGTPGRVFD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 165 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVLLSATMPADVLEVT 224

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 225 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 345 INYDLPTNRENYIH 358


>gi|284053417|ref|ZP_06383627.1| DEAD/DEAH box helicase-like protein [Arthrospira platensis str.
           Paraca]
          Length = 465

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 9/346 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L +   +         A+ 
Sbjct: 18  LETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVH------AAG 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+QV   +        + V    GG S+ R+ + L+ G  +VVGTPGR
Sbjct: 72  IQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRGVQVVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAI 193
           + D +    L +  L+ +VLDEADEML +GF  D+E IL+S+  + R+   FSAT+  +I
Sbjct: 132 ILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTAFFSATMDASI 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252
           + L + + K  V V + +       I+    +V     +  A+  IL     ++AI+F  
Sbjct: 192 SKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEPILELEDPESAIIFVR 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S +  T  L      V    G L+Q +R   L  +R  + R  +ATD+AARG+D+  
Sbjct: 252 TKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVATDIAARGLDVDH 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           L  VI+ +L    ++ +HR GRTGRAGR+G ++ +I Q + RR  R
Sbjct: 312 LTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLI-QPIDRRKLR 356


>gi|221112031|ref|XP_002166522.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III [Hydra
           magnipapillata]
          Length = 509

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 155/270 (57%), Gaps = 1/270 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L ++PTRELA Q+ + +  L     +    CIGG ++  + R L  G HIV GTPGR+ 
Sbjct: 207 VLVLSPTRELACQIQKVVLALGDYMSIQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVF 266

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I+ + L    +K ++LDE+DEML+ GF++ I  +    P   ++++ SAT+   I  +
Sbjct: 267 DMIKRRNLRTRSIKLLILDESDEMLNKGFKEQIYDVYRFLPPATQVVLVSATLPHEILEM 326

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRA 255
            + +  D +R+ +  +      I    V V   + +   + ++        A++FC+T+ 
Sbjct: 327 TQKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTITQAVIFCNTKR 386

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ + E  F VV++ G++ Q+ER + ++  R G +RV I+TDV +RG+D+P + L
Sbjct: 387 KVDWLTEKMRESNFTVVSMHGDMPQKERDSIMKEFRSGSSRVLISTDVWSRGLDVPQVSL 446

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 447 VINYDLPNNRELYIHRIGRSGRYGRKGVAI 476



 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 6/144 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A    +   + R         L
Sbjct: 52  GFERPSAIQQRAIIPIIKGRDVIAQAQSGTGKTATFSIAALQQI---DTRLRETQV---L 105

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q+ + +  L     +    CIGG ++  + R L  G HIV GTPGR+ D 
Sbjct: 106 VLSPTRELACQIQKVVLALGDYMSIQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDM 165

Query: 139 IRGKGLNISHLKAVVLDEADEMLD 162
           I+ + L    +K ++LDE+DEML+
Sbjct: 166 IKRRNLRTRSIKLLILDESDEMLN 189


>gi|158314209|ref|YP_001506717.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158109614|gb|ABW11811.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 446

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 170/343 (49%), Gaps = 6/343 (1%)

Query: 33  PD-LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91
           PD L  ++VL  A+TGSGKT+AFGL L + L A      P   P  L + PTRELA QV 
Sbjct: 2   PDVLAGENVLGRARTGSGKTLAFGLPLLARL-ATTGAARPRQ-PRGLILVPTRELAQQVN 59

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
             L  L    G+ +    GG S+ R+   L+ G H+VV TPGRL D +      +  ++ 
Sbjct: 60  DVLAPLTRALGLWMTPVYGGTSISRQISALRRGVHLVVATPGRLTDLVERDACILDEIEI 119

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
            VLDEAD M DLGF   ++ +LD +P   + L+FSAT+   +  L + Y  + V V +  
Sbjct: 120 TVLDEADFMCDLGFLPAVKALLDMTPSDSQRLLFSATLDREVEVLVRGYLPEPVLVAVDP 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
           E  Q S +   A+          +V  L   GA   +VF  T+    R  + L E     
Sbjct: 180 EVSQVSTLARHAMESVDRTAQLRLVTALAC-GAGRTLVFVRTQRDADRVAQALTEAGVPA 238

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
             L G + Q  R+ AL    DG  RV +ATDVAARGI +  + LV+H     + +   HR
Sbjct: 239 EPLHGGMPQGARTRALAGFTDGFYRVLVATDVAARGIHVDGIGLVLHLGPPEDAKTYQHR 298

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            GRT RAG  G  V V     + +A  L R   V +  +P P+
Sbjct: 299 GGRTARAGADGADVLVTVPAERGKARSLLRA--VGIPTQPVPT 339


>gi|148231181|ref|NP_001086413.1| translation initiation factor eIF4A II [Xenopus laevis]
 gi|50603985|gb|AAH77641.1| LOC444845 protein [Xenopus laevis]
          Length = 406

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 51  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ+ A HI+VGTPGR+ D
Sbjct: 105 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHIIVGTPGRVFD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 165 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVLLSATMPADVLEVT 224

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 225 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 345 INYDLPTNRENYIH 358


>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
 gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
          Length = 469

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/344 (33%), Positives = 182/344 (52%), Gaps = 14/344 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G  + T VQ A +   L+ KDVL  AQTGSGKT AF L +   L  EN       
Sbjct: 67  ACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRL-GEN-----PY 120

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+  + + L A   +  AV +GG+ +  + + L    H+V+ TPG
Sbjct: 121 GIFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILMERPHVVIATPG 180

Query: 134 RLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           R+  HI G   +I    S  K +VLDEAD +LD GF+D+++ I D   K+R+ L+FSAT+
Sbjct: 181 RIKAHI-GSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQTLLFSATM 239

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
           +  +  L   +   A         +    +D R + +    ++  +  +L        ++
Sbjct: 240 TGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENLELEDIRS 299

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F S   +    + +L E     VAL    +Q +R  AL   + G+A + IATDVA+R
Sbjct: 300 VIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVASR 359

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P ++LV++ ++    ++ +HR GRT RAGR G ++ ++ +
Sbjct: 360 GLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTE 403


>gi|16079569|ref|NP_390393.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310438|ref|ZP_03592285.1| hypothetical protein Bsubs1_13756 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314761|ref|ZP_03596566.1| hypothetical protein BsubsN3_13672 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319684|ref|ZP_03600978.1| hypothetical protein BsubsJ_13593 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323961|ref|ZP_03605255.1| hypothetical protein BsubsS_13727 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731006|sp|P54475|CSHB_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshB
 gi|1303839|dbj|BAA12495.1| YqfR [Bacillus subtilis]
 gi|2634947|emb|CAB14444.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 438

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            +++E  P +I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L L  
Sbjct: 6   FELYELKPFII-DAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL- 63

Query: 61  TLLAENDRFSPASAPLALAI-APTRELAVQVGRE-LEWLYAKTGVVV-AVC-IGGVSVHR 116
                 ++  PA   + + I APTRELA Q+ +E L+    + G  + + C IGG    +
Sbjct: 64  ------NKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQK 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I    
Sbjct: 118 SIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRM 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D  + 
Sbjct: 178 PEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLF 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D    
Sbjct: 238 DIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFT 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 298 YIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTI 348


>gi|50750746|ref|XP_422125.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           [Gallus gallus]
          Length = 662

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +S+ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 184 KGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF--LIPAVELIYKLKFMPR 241

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 242 NGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 301

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 302 GRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTR 361

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LAK + +K+ + V +  +N++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 362 KVEDLAKISLKKEPLYVGV-DDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 420

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 421 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARG 480

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 481 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 527


>gi|6322323|ref|NP_012397.1| Tif2p [Saccharomyces cerevisiae S288c]
 gi|6322912|ref|NP_012985.1| Tif1p [Saccharomyces cerevisiae S288c]
 gi|124218|sp|P10081|IF4A_YEAST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|160395531|sp|A6ZQJ1|IF4A_YEAS7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Stimulator factor I 37 kDa component;
           AltName: Full=Translation initiation factor 1/2;
           AltName: Full=p37
 gi|192988258|pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988259|pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|192988263|pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
 gi|192988264|pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
 gi|4621|emb|CAA31301.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|4623|emb|CAA31302.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|486521|emb|CAA82138.1| TIF1 [Saccharomyces cerevisiae]
 gi|854559|emb|CAA60817.1| translation initiation factor [Saccharomyces cerevisiae]
 gi|1015544|emb|CAA89433.1| TIF2 [Saccharomyces cerevisiae]
 gi|151941599|gb|EDN59962.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|151944988|gb|EDN63243.1| translation initiation factor eIF4A subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190409872|gb|EDV13137.1| eukaryotic initiation factor 4A [Saccharomyces cerevisiae RM11-1a]
 gi|259147888|emb|CAY81138.1| Tif1p [Saccharomyces cerevisiae EC1118]
 gi|285812764|tpg|DAA08662.1| TPA: Tif2p [Saccharomyces cerevisiae S288c]
 gi|285813313|tpg|DAA09210.1| TPA: Tif1p [Saccharomyces cerevisiae S288c]
 gi|323304041|gb|EGA57820.1| Tif1p [Saccharomyces cerevisiae FostersB]
 gi|323304434|gb|EGA58205.1| Tif2p [Saccharomyces cerevisiae FostersB]
 gi|323308246|gb|EGA61495.1| Tif1p [Saccharomyces cerevisiae FostersO]
 gi|323332640|gb|EGA74046.1| Tif1p [Saccharomyces cerevisiae AWRI796]
 gi|323332976|gb|EGA74378.1| Tif2p [Saccharomyces cerevisiae AWRI796]
 gi|323336789|gb|EGA78053.1| Tif1p [Saccharomyces cerevisiae Vin13]
 gi|323337041|gb|EGA78297.1| Tif2p [Saccharomyces cerevisiae Vin13]
 gi|323347652|gb|EGA81917.1| Tif1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323348035|gb|EGA82293.1| Tif2p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354172|gb|EGA86018.1| Tif1p [Saccharomyces cerevisiae VL3]
 gi|323354391|gb|EGA86230.1| Tif2p [Saccharomyces cerevisiae VL3]
          Length = 395

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 167/313 (53%), Gaps = 8/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DVL  AQ+G+GKT  F +A     L   D  +   AP AL
Sbjct: 41  GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA----LQRID--TSVKAPQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     + V  CIGG S   +   L++ A IVVGTPGR+ D+
Sbjct: 95  MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDN 153

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ +      +K  +LDEADEML  GF++ I  I    P   ++++ SAT+   +  +  
Sbjct: 154 IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT 213

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ VR+ +  +      I    V V   + +   + ++        A++FC+TR  V
Sbjct: 214 KFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKV 273

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+  +L QQER   ++  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 274 EELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 333

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 334 NYDLPANKENYIH 346


>gi|258624294|ref|ZP_05719243.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583445|gb|EEW08245.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 434

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 170/325 (52%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L     + SP    L L   PT
Sbjct: 46  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERL-----KTSPEQQTLVLV--PT 98

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 99  RELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPNILVATTGRLFD-LTQSG 157

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+     
Sbjct: 158 LSLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHA 217

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 218 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWSQVLVFIGAKENADSLTKK 277

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ +R  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 278 LNKAGVVATALHGDKSQAQRETALAEFKNGTTQVLIATDLLARGIHIEQLPVVINFELPM 337

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG++G+++ ++
Sbjct: 338 HAEAYVHRVGRTARAGQQGIALSLV 362


>gi|152975383|ref|YP_001374900.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024135|gb|ABS21905.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 389

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 180/351 (51%), Gaps = 11/351 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q   +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKECTEIQAQAIPTILDGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHAEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     D I  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMIDTIFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRY 241
           + FSAT++     +A+++   AV+       R  +      + +    R+ N  V  + +
Sbjct: 175 VFFSATMTKEAEEVARDF---AVQPQFICVKRAETKSLVEHMYIVCERREKNEYVRRIMH 231

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G   A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +AT
Sbjct: 232 TGQVKAVAFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRSGKLEILLAT 291

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           DVAARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  +  V PQ 
Sbjct: 292 DVAARGLDINDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVISLVTPQE 342


>gi|328789449|ref|XP_003251275.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
           mellifera]
          Length = 452

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 182/344 (52%), Gaps = 26/344 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L   D +  A+TGSGKT+AF L +   L    D +       AL + PT
Sbjct: 25  TPIQQNCIPRILAGTDCIGCAKTGSGKTLAFALPILQKL--SEDPY----GIFALVLTPT 78

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  +   +    G+   + +GG+ +  +  +L    HIVV TPGRL DH+    
Sbjct: 79  RELAFQIADQFSAIGKSIGLKKCIIVGGMDMVVQGLELSKHPHIVVATPGRLADHLESCN 138

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA----- 197
             ++  +K +VLDEAD +L+  F D ++ I ++ PK++++L+FSAT++  +  +      
Sbjct: 139 TFSLKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQILLFSATMTDTLHKVKHIVSN 198

Query: 198 KNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA----IVF 250
           K +    KD   +    E  QH       VL     RD+ +V ++R   A N     I+F
Sbjct: 199 KAFIWESKDESGIATVKELNQHY------VLCPRDIRDSFLVEVIRTFRANNKNGSIIIF 252

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T       +  L +  F+ VAL   + Q++R  AL   +    ++ IATDVAARG+D+
Sbjct: 253 TDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQFKSNHIKILIATDVAARGLDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
           P +EL+I+  + + P+  +HR GRT RAG+ GM++ +I P +++
Sbjct: 313 PTVELIINHIIPNVPKEYIHRVGRTARAGKSGMAITLITPHDIK 356


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 183/386 (47%), Gaps = 44/386 (11%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P  + E +    Y   T VQ   +   L  +D++  AQTGSGKT AF   +   
Sbjct: 34  FEDVDLPPALMENVKRCKYNKPTPVQRYSIPIGLAGRDMMACAQTGSGKTAAFCFPIIGN 93

Query: 62  LLAEND---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           +L       R S  + PLAL ++PTREL+ Q+  E      +TGV   V  GG    ++ 
Sbjct: 94  ILRSGYTPLRGSRKAFPLALVLSPTRELSTQIYDESRKFTYQTGVRPVVVYGGAPQQQQL 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------- 169
           R+L+ G   +V TPGRL D +    +++  ++ + LDEAD MLD+GF   I         
Sbjct: 154 RELERGCDFLVATPGRLIDIMDRARVSLGKVRFLALDEADRMLDMGFEPQIRRRGPLPGL 213

Query: 170 --------------------------EFILDSS----PKKRRMLMFSATISPAITTLAKN 199
                                       I+D      P +R+ L+FSAT    I  LA +
Sbjct: 214 PRLSPSPAAAPEAWPCRRGLPRPRRNPPIVDEEDMPRPGERQTLLFSATFPKEIQRLAAD 273

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           +  + + + +         I      V + D+   ++++L+       ++F  T+     
Sbjct: 274 FLHNYIFLTVGRVGSSTDLIVQVIEYVPIQDKRQMVLDLLQTLEKGLTLIFVETKKGADA 333

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L  +     ++ G+ SQ ER  AL+  R GR  V +ATDVAARG+D+P +  VI+ 
Sbjct: 334 LEDFLCRNGLPATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHVINF 393

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L S+ ++ +HR GRTGRAG+KG++ 
Sbjct: 394 DLPSDIDDYVHRIGRTGRAGKKGLAT 419


>gi|218187571|gb|EEC69998.1| hypothetical protein OsI_00527 [Oryza sativa Indica Group]
          Length = 648

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 195/367 (53%), Gaps = 25/367 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL   G+   T VQ A +   L  KDV V A TGSGKT+AF + +   L     
Sbjct: 33  PEVV-KALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPS 91

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN-GA 125
              P    L + I+PTREL+ Q+    +  +A   GV   + +GG  +  E + L+  GA
Sbjct: 92  PPKPHEV-LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGA 150

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+VGTPG+L D + R   LN  +L+ ++LDEAD +LDLGF+  I  I+   PK RR  +
Sbjct: 151 NILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGL 210

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSD---------------IDYRAVLVALS 229
           FSAT + A+  LAK   ++ VRV + +E +  S                +    ++   S
Sbjct: 211 FSATQTEAVKELAKAGLRNPVRVEVKTEVKPTSKDGAQQELGPSKTPLGLRLEYMICEAS 270

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA--EHL--FQVVALSGELSQQERSN 285
           ++ + +V+ L  +  K  +V+ +T A V  +  VL   + L    ++   G++ Q  R  
Sbjct: 271 NKSSQLVDFLVQNNGKKIMVYFATCACVDYWAIVLPLLDSLKGSPIIPYHGKMKQGPREK 330

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS- 344
           AL       + + + TDVAARG+D+P ++L++  +   +P   +HR+GRT R  ++G + 
Sbjct: 331 ALASFSALSSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAI 390

Query: 345 VFVIPQN 351
           VF++P+ 
Sbjct: 391 VFLLPKE 397


>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
 gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
          Length = 583

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 180/363 (49%), Gaps = 24/363 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++  A+ E GY   T +Q A +   L+++DV+  A TGSGKT AF + +   +  L +
Sbjct: 194 PEIL-RAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSRLPK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APT ELA Q+  E   L     + V   + G ++  +   L  G 
Sbjct: 253 MTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLLQGC 312

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
            IV+ TPGRL  H   +G  + H    VVLDE D M+ LGF + +   L++ P       
Sbjct: 313 EIVIATPGRLL-HCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPSSNMKPE 371

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LAK Y ++ V V I   +++   I  + ++V  
Sbjct: 372 SEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKR---ISQKVIMVDE 428

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            ++   +  +L   G  + IVF +T+    + +K L +   +V  + G  +QQ+R    Q
Sbjct: 429 EEKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQTNFQ 488

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  R    IATDV  RGID+PD+  +++ ++ S  E  +HR GRTGRAG+ G +   +
Sbjct: 489 DFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFL 548

Query: 349 PQN 351
             N
Sbjct: 549 TLN 551


>gi|76675332|ref|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 1 [Bos
           taurus]
 gi|297471793|ref|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
 gi|296490513|gb|DAA32626.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
          Length = 671

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 196/359 (54%), Gaps = 12/359 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F+++  ++ E    A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A
Sbjct: 180 FDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPA 238

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +  +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 239 VELIVKL-KFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 297

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +IVV TPGRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P 
Sbjct: 298 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 357

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K+ + V +  +  N     ++   V+     R   +
Sbjct: 358 RRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLL 417

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       +  +
Sbjct: 418 FTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADS 477

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
            + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 478 GILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 536


>gi|152976718|ref|YP_001376235.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025470|gb|ABS23240.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 188/366 (51%), Gaps = 12/366 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A+ E  +   T +Q+ I     +   ++  +QTGSGKT A+       LL  
Sbjct: 10  NFQPFLIDAVRELRFTEPTEIQKKIFPVVKKGVSIIGQSQTGSGKTHAY-------LLPT 62

Query: 66  NDRFSPASAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRD 120
            ++  P    + L I APTRELA Q+ +E   L     +  ++ A C IGG    R    
Sbjct: 63  INQIDPKREEVQLVITAPTRELAQQIYQEIIKLTKFCTEEQMITARCLIGGTDKQRSIEK 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HIVVGTPGR+ D I  + L +   + +++DEAD MLD+GF  D++ +    PK  
Sbjct: 123 LKKQPHIVVGTPGRIKDLIEEQALFVHTAETIIVDEADLMLDMGFIQDVDKVAARMPKNL 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   + N+L 
Sbjct: 183 QMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIEIVKNMLL 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AIVF +T+         L E   +V  + G+LS ++R   ++ +RD   +  +A
Sbjct: 243 QFQPYLAIVFTNTKKMAEEVANGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ E+ S+ +  +HR GRT RAG  G++V +     +   + L 
Sbjct: 303 TDLAARGIDIEGISHVINYEIPSDLDFFVHRVGRTARAGYSGIAVTIYDARDEEAIDSLE 362

Query: 361 REANVS 366
           ++ N++
Sbjct: 363 KQRNIT 368


>gi|303391040|ref|XP_003073750.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302898|gb|ADM12390.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 457

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 199/350 (56%), Gaps = 19/350 (5%)

Query: 5   ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           E+IP   ++ + +   G+  +T VQ+  +   L+ KDV+V + TG+GKT+AF   LA  L
Sbjct: 7   EDIPINSILKKEIEANGFGKMTDVQQMCVPEMLKGKDVVVQSPTGTGKTMAF---LAPIL 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  DR       +A+ I PTRELA+Q+ +++  L+   GV     IGG+++  +   ++
Sbjct: 64  SAIYDR-REEKGIVAMIITPTRELALQI-KDVADLF---GVGCECFIGGMNIEDDYERMK 118

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IVVGTPGRL + +       S ++  +LDEAD++L  GF + +  +L   PK R  
Sbjct: 119 KEFPIVVGTPGRLLEIVGRDTKKFSRVRHAILDEADKLLGFGFEEKLLQLLAKLPKNRVT 178

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI+ +++ L+ +  ++ V +N+ + N     ++Y  ++++  D+  A+V+I+   
Sbjct: 179 GLFSATINDSVSKLSMSSLRNPVSINVGN-NAMPVALEY--IVLSPMDKLFALVDIV--- 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +  IVF +T   V  F+ +L+    Q +  + G++ Q ER+   +    G + +   T
Sbjct: 233 PGRRCIVFFATCNEVDFFSSLLSRAGLQNICKIHGKIPQDERNRVYREFFKGNS-LLFCT 291

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           DVAARGID  D++LV+H ++     +++HRSGRT R G KG S+ FV+P 
Sbjct: 292 DVAARGIDFQDVDLVVHFDIPKEYSSIVHRSGRTARNGCKGESILFVMPN 341


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 186/354 (52%), Gaps = 21/354 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           + L    +   T +QEA + P L  +D+L  AQTG+GKT A+ L + + + L E +    
Sbjct: 14  DGLDAMNFSEPTPIQEATIPPLLEGRDLLGCAQTGTGKTAAYLLPIINRIYLGEFEE--- 70

Query: 72  ASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                A+ +APTRELA Q+ +++    +  + + + +     G +  + +R  + G  IV
Sbjct: 71  -GYIKAIVMAPTRELAQQIDQQITGFGYFVSISSLAIYGGTDGSAWAQAQRGAERGTDIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL   +  +  +ISH    V+DEAD MLD+GF DDI  I    PK  ++ +FSAT
Sbjct: 130 VATPGRLISMLNLQAADISHTSYFVIDEADRMLDMGFYDDIMSICRHLPKTCQIALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENR-----QHSDIDYRAV-LVALSDRDNAIVNILRYH 242
           + P I  LA++  KD V V IA         Q + I Y A  L  ++D    +++ +   
Sbjct: 190 MPPKIEELARSILKDPVHVAIAISKPPETILQSAYICYEAQKLPIVTD----LLSSMSEE 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF S++  V +    L      V  +  +L Q  R   ++  + G   V +ATD
Sbjct: 246 KPTKTVVFSSSKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTGYVEVLVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQR 354
           + ARGID+ D+++VI+ ++  +PE+ +HR GRT R   GR G+++ ++ +  QR
Sbjct: 306 IVARGIDIDDIKVVINYDMPHDPEDYVHRIGRTARGTDGR-GVAITLVNEEEQR 358


>gi|159040130|ref|YP_001539383.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918965|gb|ABW00393.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 453

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 176/361 (48%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS  G      +Q A L   L  +DVL   +TGSGKT AF LA+  T LA 
Sbjct: 11  GVPDTLDRLLSAAGVERPFPIQAATLPDALAGRDVLGRGRTGSGKTYAFVLAVL-TRLAA 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +     A  P AL + PTRELA Q+   +  L     +   V  GGV+   +   L+ G 
Sbjct: 70  SATSRRAGRPRALILVPTRELATQIDSVMAPLARALSLRTMVVFGGVAARPQITGLRAGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V  PGRL DH++    ++  ++  VLDEAD M DLGF   +  +L+ +P + + L+F
Sbjct: 130 DVLVACPGRLADHVQAGNAHLDAVEITVLDEADHMADLGFLPTVRRLLERTPHRGQRLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  + V  ++ S     + + +  + V   DR   +V +       
Sbjct: 190 SATLDSGVDVLVRRFLTNPVTHSVDSTLSPVAAMTHHILHVHADDRFAVLVEL--TAAPS 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + LA      V L G L+Q  R+  L+    G A   +ATD+AA
Sbjct: 248 RTVVFTRTKRGARTLARRLAAAGVTAVELHGNLAQGARTRNLRAFATGEAHTLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D+ LV+HA+     +  LHRSGRT RAG  G  V ++          L R+A +
Sbjct: 308 RGIHIDDVALVVHADPPVEHKAYLHRSGRTARAGADGTVVTLMTDGQVAEVRALTRKAGI 367

Query: 366 S 366
           +
Sbjct: 368 T 368


>gi|15217442|ref|NP_177293.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861897|sp|Q8GXD6|RH49_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 49
 gi|12323724|gb|AAG51820.1|AC016163_9 putative ATP-dependent RNA helicase; 76692-78838 [Arabidopsis
           thaliana]
 gi|332197073|gb|AEE35194.1| DEAD-box ATP-dependent RNA helicase 49 [Arabidopsis thaliana]
          Length = 558

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 192/350 (54%), Gaps = 10/350 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL   G+   T VQ   +      KDV+V A TGSGKT+AF L     +   N    
Sbjct: 27  IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIV 128
                + + I+PTREL+ Q+ +  E ++     V   + +GG  V  +   L+  GA+++
Sbjct: 87  KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLL 146

Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +GTPGRL D + R + L+  +L+ ++LDEAD +LD+GF+  + +I+   PK+RR  +FSA
Sbjct: 147 IGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNA-IVNILRYHGAK 245
           T + A+  LAK   ++A+ V   +E++  +    Y   L   +D+ ++ +V++L  +  K
Sbjct: 207 TQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIENKNK 266

Query: 246 NAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +VF  T A V  +  VL++          +  G++ Q+ R  AL    +  + V + T
Sbjct: 267 KLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCT 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           DVAARG+D+P ++ V+  +   +P+  +HR GRT R  R+G + VF++P+
Sbjct: 327 DVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPK 376


>gi|308808320|ref|XP_003081470.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116059933|emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 777

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 177/339 (52%), Gaps = 7/339 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ   + P L  KDVL +A+TGSGKT+AF   + S  L  + +F P +    +
Sbjct: 185 GFTTMTEVQARCVPPLLAGKDVLGAARTGSGKTLAF--LVPSAELLYHAKFMPRNGTGVM 242

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+    + L  K      + IGG +   E   L  G +++V TPGRL DH
Sbjct: 243 VLSPTRELALQIYNVAQQLMEKHSQTHGLIIGGANRRAEAERLIKGVNLLVATPGRLLDH 302

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           ++  +G   S LK  V+DEAD MLD+GF +++  I+   PK+R+ ++FSAT +  +  LA
Sbjct: 303 MQNTRGFTFSSLKVFVMDEADRMLDIGFEEEMRTIVKMLPKERQTMLFSATQTTKVEDLA 362

Query: 198 KNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +   K  + + +         S ++    +V    R   +   L+ +  K  +VF S+  
Sbjct: 363 RLSLKSPIYIGVDDSRAVSTASGVEQGYCVVPSEQRFLLLFTFLKKNLKKKIMVFFSSCN 422

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           SV    ++L      V  + G+  QQ R+            + + TDVAARG+D+P ++ 
Sbjct: 423 SVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERGILLCTDVAARGLDIPAVDW 482

Query: 316 VIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +I  +   +P+  +HR GRT R   G+    +F+IP+ +
Sbjct: 483 IIQYDPPDDPKEYIHRVGRTARGTDGKGRALLFLIPEEL 521


>gi|226468596|emb|CAX69975.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
 gi|226484750|emb|CAX74284.1| ATP-dependent rRNA helicase RRP3 [Schistosoma japonicum]
          Length = 563

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/364 (32%), Positives = 190/364 (52%), Gaps = 44/364 (12%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q   + P L  ++++  A+TGSGKT A+ L +   LL     F       AL +APT
Sbjct: 28  TAIQVLSIPPALEGRNLVALAETGSGKTGAYALPIIQKLLQNPHPF------FALVLAPT 81

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ--NGAHIVVGTPGRLCDHIR- 140
           RELA QV  +   L    G+  A+ +GGV +  ++ DL   +  H+V+ TPGR  DH++ 
Sbjct: 82  RELAAQVQAQFNALGKTIGLSTALLVGGVPI-TQQSDLMKISPPHVVIATPGRFVDHLKK 140

Query: 141 GKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            KG   L   +L+ +V+DEAD ML + F   IE IL   P KR+  +FSAT++  +  L 
Sbjct: 141 TKGFDELKFKNLRILVIDEADRMLGVDFESVIEKILCIVPTKRQTFLFSATMTDKVGKLQ 200

Query: 198 KNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRY--------------- 241
           +    D VRV+   S+ +  +++     LV   + D  +V +LR                
Sbjct: 201 RASVHDPVRVSTRKSKFQSLTNLRQYVHLVPQCEIDTYLVYLLRVALCPEIQVPGLDLIK 260

Query: 242 --------------HGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNA 286
                           + + IVF  TR + +R   +L + L Q V+AL+G++ Q +R  A
Sbjct: 261 LQSTSENEDSDDQSFMSTSVIVFTRTRVASNRLNLLLRQFLRQPVIALNGDMLQAQRLGA 320

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   +  +  V +ATDVA+RG+D+P + LV++ ++  + +  +HR GRT RAGR G ++ 
Sbjct: 321 LHKFKRTQGAVLVATDVASRGLDIPQVGLVVNYDVPLDAKIYMHRVGRTARAGRHGCALT 380

Query: 347 VIPQ 350
           ++ Q
Sbjct: 381 LLTQ 384


>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 445

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  FE +   PQ++ +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L 
Sbjct: 7   LMTFEELDLAPQLL-KALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLP 65

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               LL +  R  P  AP  L + PTRELA+QV  E +     T + +A   GG++    
Sbjct: 66  AIQHLL-DYPRRKPG-APRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQNH 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   + 
Sbjct: 124 GEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETR 183

Query: 178 KKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
            ++   +FSAT+    +         + ++++     R+   I    Y A  V    +  
Sbjct: 184 WRKHTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNV--EHKTK 241

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G
Sbjct: 242 LLARLISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEG 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 302 VVNVLVATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLV 356


>gi|26451630|dbj|BAC42912.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
          Length = 558

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 192/350 (54%), Gaps = 10/350 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL   G+   T VQ   +      KDV+V A TGSGKT+AF L     +   N    
Sbjct: 27  IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86

Query: 71  PASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIV 128
                + + I+PTREL+ Q+ +  E ++     V   + +GG  V  +   L+  GA+++
Sbjct: 87  KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLL 146

Query: 129 VGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +GTPGRL D + R + L+  +L+ ++LDEAD +LD+GF+  + +I+   PK+RR  +FSA
Sbjct: 147 IGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNA-IVNILRYHGAK 245
           T + A+  LAK   ++A+ V   +E++  +    Y   L   +D+ ++ +V++L  +  K
Sbjct: 207 TQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIENKNK 266

Query: 246 NAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             +VF  T A V  +  VL++          +  G++ Q+ R  AL    +  + V + T
Sbjct: 267 KLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCT 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           DVAARG+D+P ++ V+  +   +P+  +HR GRT R  R+G + VF++P+
Sbjct: 327 DVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPK 376


>gi|321314473|ref|YP_004206760.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320020747|gb|ADV95733.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 376

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 197/365 (53%), Gaps = 10/365 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N    I E  +  G+   T VQE      +  KDV+  + TG+GKT+A+ L +     
Sbjct: 8   LHNAQSFIQENWNASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVL---- 63

Query: 64  AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +R  P    P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+
Sbjct: 64  ---ERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLK 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VGTPGR+ + I+ K L +  +K +VLDEAD+++    R+ I+ I+ ++ + R++
Sbjct: 121 KHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDRQL 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+      + +   ++   + +     +   + ++ ++    D+   +  + R  
Sbjct: 181 LCFSATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLE 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G + A+VF     ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD
Sbjct: 241 GMQ-ALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIISAFEDGEFPLLLATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++
Sbjct: 300 IAARGLDIENLPYVIHADI-PDEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKK 358

Query: 363 ANVSV 367
             V +
Sbjct: 359 LGVEL 363


>gi|154324134|ref|XP_001561381.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
 gi|160395528|sp|A6RJ45|IF4A_BOTFB RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|150842695|gb|EDN17888.1| eukaryotic initiation factor 4A [Botryotinia fuckeliana B05.10]
          Length = 398

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L        P      A
Sbjct: 44  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKL-------DPNVKQCQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     V    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 97  LILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +         I    + V   D + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 337 INYDLPANRENYIH 350


>gi|291484959|dbj|BAI86034.1| hypothetical protein BSNT_03747 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 447

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            +++E  P +I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L L  
Sbjct: 15  FELYELKPFII-DAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL- 72

Query: 61  TLLAENDRFSPASAPLALAI-APTRELAVQVGRE-LEWLYAKTGVVV-AVC-IGGVSVHR 116
                 ++  PA   + + I APTRELA Q+ +E L+    + G  + + C IGG    +
Sbjct: 73  ------NKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQK 126

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I    
Sbjct: 127 SIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRM 186

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D  + 
Sbjct: 187 PEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLF 246

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D    
Sbjct: 247 DIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFT 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 307 YVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTI 357


>gi|15219185|ref|NP_173078.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75336890|sp|Q9SA27|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family [Arabidopsis thaliana]
 gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
          Length = 491

 Score =  170 bits (430), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   E G    T VQ   +   L  +DVL  AQTGSGKT AF L +   L AE+      
Sbjct: 71  ETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRL-AED-----P 124

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  + + L +   +  +V +GG+ +  +   L +  HIV+ TP
Sbjct: 125 YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTP 184

Query: 133 GR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR   L ++        S  K +VLDEAD +LD+GF+D++  I    PK R+ L+FSAT+
Sbjct: 185 GRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATM 244

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY---HGAK 245
           +  +  L ++    A     A E  +  D   +  +    D ++  +V+IL      G +
Sbjct: 245 TSNLQALLEHSSNKAYFYE-AYEGLKTVDTLTQQFIFEDKDAKELYLVHILSQMEDKGIR 303

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++F ST  +  R + +L E   + +A+    SQ  R +AL   + G+  + +ATDVA+
Sbjct: 304 SAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVAS 363

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RG+D+P ++LVI+ ++  +P + +HR GRT RAGR G++V +I + 
Sbjct: 364 RGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITET 409


>gi|321311997|ref|YP_004204284.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320018271|gb|ADV93257.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 438

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 191/351 (54%), Gaps = 12/351 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            +++E  P +I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L L  
Sbjct: 6   FELYELKPFII-DAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLL- 63

Query: 61  TLLAENDRFSPASAPLALAI-APTRELAVQVGRE-LEWLYAKTGVVV-AVC-IGGVSVHR 116
                 ++  PA   + + I APTRELA Q+ +E L+    + G  + + C IGG    +
Sbjct: 64  ------NKIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQK 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I    
Sbjct: 118 SIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRM 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D  + 
Sbjct: 178 PEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLF 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D    
Sbjct: 238 DIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFT 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +
Sbjct: 298 YIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTI 348


>gi|229916313|ref|YP_002884959.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229467742|gb|ACQ69514.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 447

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 179/341 (52%), Gaps = 9/341 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P ++ +AL+E+     T +Q  I+   L  +D++  +QTG+GKT+AF L +   + 
Sbjct: 7   FKLLPFMV-DALTEKRITKPTDIQARIIPAALNGRDIIGKSQTGTGKTLAFLLPIVEAIN 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDL 121
            E+      ++  A+ +APTRELA Q+  EL+ +  K    +  ++ +GG    R+   +
Sbjct: 66  PED------ASVQAIVVAPTRELAWQIHEELKSILIKNPDYIKSSLIVGGTDRERQIDKM 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N   +++GTPGR+ D ++ + L    +   V+DEAD+MLD+GF  +++ I  + P+K +
Sbjct: 120 KNPPQLIIGTPGRILDLMKAQALFPHKVTHFVVDEADQMLDMGFLPEVDRIAQALPEKLQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSATI   +    K Y  D      + E+R    I +  + V   DR    V I + 
Sbjct: 180 TMVFSATIPENLEPFLKKYLHDPRFAEASPEHRVAPKIKHHVIPVRHRDRKELTVEIAKA 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+           E    V  L G++  + R  A++ + D + +  IAT
Sbjct: 240 INPFVCLVFTNTKQEADELETSFREAGLNVGTLHGDMQARRRKQAIKDINDAKYQYVIAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+AARGID+  +  VI+  +  + +   HR GRTGRAG  G
Sbjct: 300 DLAARGIDISGVSHVINHGIPKDLDFYTHRVGRTGRAGASG 340


>gi|2370591|emb|CAA73167.1| translation initiation factor eIF4A I [Xenopus laevis]
          Length = 406

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 169/314 (53%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +        A  AL
Sbjct: 51  GFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD------MKATQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG  V  E + LQ+ A HIVVGTPGR+ D
Sbjct: 105 VLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTDVRAEVQKLQSEAPHIVVGTPGRVFD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K  VLDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 165 MLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVLLSATMPADVLEVT 224

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
           K + +D +R+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 225 KKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 345 INYDLPTNRENYIH 358


>gi|168014437|ref|XP_001759758.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688888|gb|EDQ75262.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 631

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/359 (33%), Positives = 190/359 (52%), Gaps = 21/359 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L   G+   T VQ + +      KDV V A TGSGKT+AF + +   L    D    A
Sbjct: 23  QVLDSFGFHTATPVQASTIPLLSTYKDVAVDAATGSGKTLAFLVPMVEILRRLTDPLK-A 81

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
               A+ ++PTRELA Q+   L  +L    GV   + +GG  V  E   L Q GA++++G
Sbjct: 82  FQVGAVIVSPTRELASQIYHVLGPFLTTLRGVQAMLLVGGTDVTAEVAKLKQTGANVLIG 141

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL D + R   L+  +L+ ++LDEAD +LD+GF+  +  IL   PK+RR  +FSAT 
Sbjct: 142 TPGRLYDIMERVTALDFKNLEVLILDEADRLLDMGFQRQLTAILGHLPKQRRTGLFSATQ 201

Query: 190 SPAITTLAKNYQKDAVRVNIASE------------NRQHSDIDYRAVLVALSDRDNAIVN 237
           + A+  LA+   ++ VRV + ++            ++  S +  + ++    ++ + +V+
Sbjct: 202 TEAVVELARAGLRNPVRVEVRTQAKAQAADTESFQSKTPSGLTLQYLICEGDEKPSQLVH 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLA--EHL--FQVVALSGELSQQERSNALQMMRDG 293
            L  H     I++  T A V  +  +L   E L   Q VAL G++ Q  R  AL M    
Sbjct: 262 FLCQHRQNKIILYFMTCACVDYWAIMLPQLESLSGLQAVALHGKMKQAAREKALAMFSGM 321

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
            A + + TDVAARG+D+P ++ +I  +   +P   +HR GRT R G+ G + VF++P+ 
Sbjct: 322 TAGLLVCTDVAARGLDIPGVDWIIQYDPPQDPNVFVHRVGRTARMGQSGDALVFLLPKE 380


>gi|146300368|ref|YP_001194959.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154786|gb|ABQ05640.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 453

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 174/340 (51%), Gaps = 10/340 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           LS  G  +L  +QE   +  L + +VL+ + TGSGKT+AF L +   L  E        +
Sbjct: 11  LSNLGIQSLNEMQETAQDVILNDNNVLLLSPTGSGKTLAFLLPVLELLQPE------ILS 64

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L + P+REL +Q+  E  W    T   V +C GG S+  E ++L N   +++GTPGR
Sbjct: 65  VQCLILVPSRELGLQI--EQVWKKMGTQYKVNICYGGHSIDTEIKNLSNPPAVLIGTPGR 122

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DHI  +      ++ ++LDE D+ L LGF + + FI+   PK  + ++ SAT    I 
Sbjct: 123 IADHIDRETFRTDKIQTLILDEFDKSLQLGFHEQMSFIIGRLPKVNKRVLVSATSDIEIP 182

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
              +    +   ++   E  + +++  + ++    D+  ++ N++    +++AI+FC+ R
Sbjct: 183 KYTRVV--NPTVLDFIPEEEEKANLSMKMIVSPSKDKLESLFNLICSLKSESAIIFCNHR 240

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +  R +  L E         G + Q ER  AL   R+G     I TD+AARG+D+P+++
Sbjct: 241 DAAERISDTLNEKGIYATYYHGGMDQDERERALIQFRNGSISYLITTDLAARGLDIPEMK 300

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            VIH  L    +   HR+GRT R    G +  ++ ++ ++
Sbjct: 301 HVIHYHLPLKEDEFTHRNGRTARMQATGTAYIIVHESEKK 340


>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
          Length = 1561

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 197/372 (52%), Gaps = 19/372 (5%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 989  NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLI-- 1046

Query: 66   NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               + P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 1047 ---YKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALRS 1103

Query: 124  GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+    K R+ 
Sbjct: 1104 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQT 1163

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
            ++FSAT++  +  LA    K+  R+ + S    ++D+    R   + +      DR+  +
Sbjct: 1164 MLFSATMTEEVKDLASVSLKNPTRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 1219

Query: 236  VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              +L      + ++F  T+    R   +L     +V  L G LSQ +R  AL+  +D + 
Sbjct: 1220 SALLTRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQI 1279

Query: 296  RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
             + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 1280 DILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKM 1339

Query: 356  AERLFREANVSV 367
             + + + A   V
Sbjct: 1340 LKEIVKSAKTPV 1351


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 172/328 (52%), Gaps = 21/328 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  +Q+G+GKT  F +A+   L       S  +    L
Sbjct: 43  GFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAMLQVLE------SATNETQML 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA Q  +    L     V    CIGG S+  + R L  G  IV GTPGR+ D 
Sbjct: 97  TISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDIRRLDYGVQIVSGTPGRVFDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   +LK +V+DEADEML+ GF++ I  I    P   ++++ SAT+   +  + +
Sbjct: 157 IKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPPSTQVVLISATMPQEVLDMTR 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VRV +  +      I    V V   + + + + ++        A++FC+T+  V
Sbjct: 217 KFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           S              A+ G++ Q+ER   +   R G +RV IATD+  RG+D+  + LVI
Sbjct: 277 S--------------AMHGDMPQRERDAIMAEFRGGASRVLIATDIWGRGLDVQQVSLVI 322

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
             +L +N E  +HR GR+GR GRKG+++
Sbjct: 323 CYDLPNNRELYIHRIGRSGRFGRKGVAI 350


>gi|227539695|ref|ZP_03969744.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240337|gb|EEI90352.1| ATP-independent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 434

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 195/367 (53%), Gaps = 20/367 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF- 69
           I   LS     +L  +Q  ++N    ++D+++ + TG+GKT+AF       LLA +  F 
Sbjct: 3   IEAILSRMNISSLNEMQSEVVNSLKLKQDIILLSPTGTGKTLAF-------LLAASYSFD 55

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    P  L +APTRELA Q+    + ++   G  V  C GG S   ER  L++   I++
Sbjct: 56  TTKKGPQCLVLAPTRELAQQIESVSKKVFH--GKRVVCCYGGHSTREERTALKHAPDIII 113

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+  H+R + L+ + L +++LDE D+ L+ GF++D+ FI+D     ++ ++ SAT 
Sbjct: 114 GTPGRIAYHLRSENLDTAQLHSLILDEFDKSLEFGFQEDMSFIIDQLSVLKQRILTSATQ 173

Query: 190 S---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
               P+ T ++     +A+ ++    +    D+  + V+    ++   + N++   G K 
Sbjct: 174 MEEIPSFTGIS-----NALTIDYLDNSDAAPDLTIKKVICRPKEKLRTLFNLICQIGNKR 228

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+ R +V   +++L +      A  G + Q +R   L   R+G +++ I TD+AAR
Sbjct: 229 MLIFCNHRDAVDHISELLMDRELIHDAFHGGMEQADRELTLLKFRNGTSQILITTDLAAR 288

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++ +IH +L    +  +HR+GRT R    G +V+VI    +  A  L  E    
Sbjct: 289 GLDIPEIDSIIHYQLPYKEDAFVHRNGRTARMKAAG-NVYVILTTDENYA-YLPDEIEEE 346

Query: 367 VVWEPAP 373
           +V E  P
Sbjct: 347 IVTEDHP 353


>gi|123457078|ref|XP_001316270.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121898971|gb|EAY04047.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 513

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/324 (33%), Positives = 173/324 (53%), Gaps = 25/324 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T+VQ+  +   L   D++V++QTGSGKT AF L + + LL       P+     +
Sbjct: 120 GYKFPTAVQKYSIPYILNGHDLIVTSQTGSGKTAAFMLPVITQLLKMQLYIHPS----VV 175

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+Q+  ++      TG+      GG  +H + R L    +I+V TPGRL D 
Sbjct: 176 IMCPTRELALQIEDQINKFAEGTGLQTVCVFGGSPIHLQLRQLSYACNILVATPGRLNDI 235

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRMLMFSATISPAIT 194
           ++   L + ++K ++LDEAD MLD+GF   I  +++    +    R+ L+FSAT    + 
Sbjct: 236 LKRGQLQLKYVKYLILDEADRMLDMGFEPQISEVINGFDMTEIANRQTLLFSATFPSEVQ 295

Query: 195 TLAKNYQKDA-VRVNIASEN-----RQHSDI--DYRAVLVALSDRDNAIVNILRYHGAKN 246
            LA+++ K A  R+ +  ++      QH +   DY        D+  A+++ L  H    
Sbjct: 296 NLARSFMKSAFTRIEVGLQDPPALIEQHFEYVRDY--------DKFPALIDFLNAHDCP- 346

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + SV R    L E  + VVA+ G+     R  AL     GRAR+ +ATDVAAR
Sbjct: 347 TLVFAERKTSVDRIEDYLYEENYPVVAIHGDRDMDNRLAALDGFTSGRARIMVATDVAAR 406

Query: 307 GIDLPDLELVIHAELSSNPENLLH 330
           GID+P++  VI+ +L ++ ++ +H
Sbjct: 407 GIDIPNVGHVINMDLPTDVDSYIH 430


>gi|119890683|ref|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|297473570|ref|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|296488716|gb|DAA30829.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos taurus]
          Length = 671

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 196/359 (54%), Gaps = 12/359 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F+++  ++ E    A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A
Sbjct: 180 FDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPA 238

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +  +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 239 VELIVKL-KFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 297

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +IVV TPGRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P 
Sbjct: 298 KLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 357

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K+ + V +  +  N     ++   V+     R   +
Sbjct: 358 RRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLL 417

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       +  +
Sbjct: 418 FTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADS 477

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
            + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 478 GILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 536


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 187/347 (53%), Gaps = 9/347 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ E + ++G+   + +Q       L+ +D++  AQTG+GKT+AF L     + 
Sbjct: 328 FHEYPELL-EEIKKQGFAKPSPIQAQAWPVLLKGEDLIGIAQTGTGKTLAFLLPAFIHIE 386

Query: 64  AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL 121
            +   R      P  L +APTRELA+Q+ +E+     +   + A+C+ GG     +   +
Sbjct: 387 GQPVPRGEARGGPNVLVMAPTRELALQIEKEV--FKYQFRDIKAICLYGGGDRRTQINKV 444

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180
           + G  I++ TPGRL D +    ++I+ +  +VLDEAD MLD+GF   I + +LD  P  R
Sbjct: 445 KGGVEIIIATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPD-R 503

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           + +M SAT  P +  LA++Y  + V+V + + +   +    + + ++   D+   ++N +
Sbjct: 504 QTIMTSATWPPGVRRLAQSYMSNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVMNFV 563

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  I+FC  +      +           +L G+  Q +R  AL+ ++ G  RV 
Sbjct: 564 TNMGPSDKVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRVL 623

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IATDVA+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G+S+
Sbjct: 624 IATDVASRGLDIEDISHVVNYDFPRNIEEYVHRVGRTGRAGRSGVSL 670


>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
 gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
 gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
 gi|123240386|emb|CAM17306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Mus musculus]
 gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
          Length = 760

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 211/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 247

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  A +   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 248 ---YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 304

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 305 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 364

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 420

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 421 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 480

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 481 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKM 540

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
            + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 541 LKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEM 589


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 182/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+E+ + + T VQE ++    + + V+  +QTGSGKT  F L L        D+  
Sbjct: 12  IYEALAEKKFTSPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLM-------DQID 64

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +  + L  + +  + V   +GG    R+   LQN    
Sbjct: 65  PQKDEVQVVITAPSRELATQIYQAAKQLAEFQQPEIRVTNFVGGTDKQRQMDRLQNQQPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D I  + L +   +A V+DEAD  LD+GF ++++ I    P+K +ML+FS
Sbjct: 125 LVIGTPGRILDMINEQALAVHTARAFVIDEADMTLDMGFLEEVDQIASRLPEKLQMLVFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ +   I  +      I+   +     D++  +  +L       
Sbjct: 185 ATIPEKLRPFLKKYLENPLIEEIRPKAVISESIENWLISTKGKDKNQLVYQLLTTGHPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T++ V   T  L E   +V  + G+++ +ER   ++ +++   +  +ATD+AAR
Sbjct: 245 AIVFANTKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+ ++ +  +HR GRTGR    G ++
Sbjct: 305 GIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQLAGTAI 343


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 197/396 (49%), Gaps = 19/396 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-------- 58
           IP ++   L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L +        
Sbjct: 16  IPPLLAR-LTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPMLQQLYLQQ 74

Query: 59  -ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVH 115
              T +A N     A     L + PTRELA QV   ++   A   G +  V + GGVSV+
Sbjct: 75  QGKTSVATNKGNYVA----GLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVSVN 130

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G+ IVV TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L  
Sbjct: 131 AQMQALRGGSDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLLAL 190

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P K++ L+FSAT    + +L ++   + V + + S +   S +  R   V    +   +
Sbjct: 191 MPAKKQTLLFSATFPLQVQSLTQSLLTNPVEIQVQSSDA--STVVQRVFTVNKGAKTELL 248

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++  H  + A++F + +       + L +         G+  Q  R+  L+  + G  
Sbjct: 249 AHLITEHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEFKAGEI 308

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATD+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I Q+    
Sbjct: 309 DILIATDIAARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQDDYHH 368

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
              + ++  + +  E  P    + E  A+ +++ P+
Sbjct: 369 FSIIEKKNKIRLERELVPGFLVV-EPSAENMVEKPM 403


>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
           mellifera]
          Length = 626

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 11/371 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P+++ E + ++ +V  + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 219 FEIYPEILDE-IRKQKFVKPSPIQSQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHIE 277

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L +APTRELA+Q+ +E+   Y+  G+      GG S  ++   +  
Sbjct: 278 GQQIPRVERKGPNVLIMAPTRELALQIEKEVN-KYSYHGIKAVCLYGGGSRKKQVNVVTE 336

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  IV+ TPGRL D +  K LNIS +  +VLDEAD MLD+GF   I + +LD  P  R+ 
Sbjct: 337 GVEIVIATPGRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRP-DRQT 395

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M SAT    +  LA++Y K+ ++V + S +    H+ +  +  +V   ++ + +    R
Sbjct: 396 VMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLATVHT-VMQKVYIVDEEEKTDMMYEFFR 454

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F   +  V      LA       ++ G   Q +R  AL+ ++ G  ++ +
Sbjct: 455 KMSPNDKVIIFFGKKTKVDDVASDLALQSVNCQSIHGGREQSDREQALEDLKTGEVQILL 514

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A+ L
Sbjct: 515 ATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESITFMTRKDWTHAKDL 574

Query: 360 ---FREANVSV 367
                EAN  V
Sbjct: 575 INILEEANQEV 585


>gi|320586377|gb|EFW99056.1| dead box RNA helicase [Grosmannia clavigera kw1407]
          Length = 613

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 200/405 (49%), Gaps = 57/405 (14%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + +  N+ + + E L   GY  +T VQ A + P L  KD++  A+TG+GKT+AF + +  
Sbjct: 96  LGVHTNLVRSLTETL---GYETMTPVQSATITPALSGKDIVAQAKTGTGKTLAFLVPVIQ 152

Query: 61  TLLAENDRFS-------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            ++ EN   +        A+  LA+ ++PTRELA Q+G E   L   TGV+V   +GG  
Sbjct: 153 KMITENPNLAYPRRIRAKANDILAIILSPTRELAEQIGEEARKLCHGTGVIVQTAVGGT- 211

Query: 114 VHRER----RDLQNGAHIVVGTPGRLCDHIRGK--GLNISHLKAVVLDEADEMLDLGF-- 165
             R+R    R  Q G H+++ TPGRL D +  +  G++   L A+VLDEAD MLD+GF  
Sbjct: 212 --RKREMLMRTRQQGCHLMIATPGRLNDILSDEMSGIDAPRLAALVLDEADRMLDVGFDQ 269

Query: 166 --RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA----VRVNIASENRQHSDI 219
             R+ +  + + S + R+ L+FSAT+   + +LA+ Y        V+   A+++  H  +
Sbjct: 270 ELREIVRHLPNRSEQPRQTLLFSATLPKNVISLARTYVDPTNFQFVQTIDANDSPTHEKV 329

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAK--------------NAIVFCSTRASVSRFTKVLA 265
                +V +   +N    +L     +               AIVF  T    + F ++ A
Sbjct: 330 PQH--IVEVKGYENIYPTVLELFKREIREAKEAGDEGKPFKAIVFLPT----TNFVQLTA 383

Query: 266 ----------EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                       L  +  +  +L+Q  R+NA  M R     +  ++DV ARG+D P++  
Sbjct: 384 VAFRMLARSNPELPYLYHIHSKLTQSARTNAADMFRRANTGILFSSDVTARGMDFPNVTH 443

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           VI   +  + E  +HR GRTGRA + G    ++P++  R A  + 
Sbjct: 444 VIQIGVPPDREQYIHRLGRTGRADKGGEGWIIVPRDEMRSARNVL 488


>gi|296453983|ref|YP_003661126.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183414|gb|ADH00296.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 742

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 121/382 (31%), Positives = 182/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSLGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D     + S   +   + +        D+   +  
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDPKVHEVDSATTEPDLMTHHVFETTRGDKHELVRT 288

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +    G +  I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 289 LASGEGRR--ILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|146417454|ref|XP_001484696.1| hypothetical protein PGUG_02425 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 601

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 187/362 (51%), Gaps = 25/362 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+   G+ ++T VQ + +      KDV+V A TGSGKT+AF + +   +        
Sbjct: 25  IHDAIDSLGFRSMTPVQASTIPLFCGNKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENR 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYA-----KTGVVVAVCIGGVSVHRERRDL---- 121
            +S    + I+PTRELA Q+      L       +  +   + +G ++  RE  DL    
Sbjct: 85  GSSGLYGIVISPTRELANQINTVFHTLLQFYPEDQPPIKTQLIVGSLATVRE--DLNAFA 142

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N   I++ TPGRL D      +  S ++ VVLDEAD +LD+ F++D+  IL   PK+RR
Sbjct: 143 ENKPQIIIATPGRLLDFFSSNAVKRSTVEMVVLDEADRLLDISFQNDVVSILKKLPKQRR 202

Query: 182 MLMFSATISPA----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +FSAT+  A      T   N  K +V  N A    Q   ++Y  ++V    +   ++N
Sbjct: 203 TGLFSATLLSAGDSIFRTGMSNPVKISVNSNKAESKPQSLTVNY--MMVNPETKIAVLIN 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALS---GELSQQERSNALQMMRDG 293
           +L     K  IV+  T ASV  F  V  + H  + V L+   G+L  + R  A+    +G
Sbjct: 261 MLLTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDVNLTSIHGQLLAKARLKAMNKFTEG 320

Query: 294 RAR----VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
             R    V + TDVAARGID+P+++LVI  +  ++P+  LHR GRTGRA + G ++ ++ 
Sbjct: 321 DVRTSKHVLLTTDVAARGIDIPEVDLVIQLDPPTDPDMFLHRCGRTGRANKVGRAIVMLN 380

Query: 350 QN 351
            N
Sbjct: 381 NN 382


>gi|125526999|gb|EAY75113.1| hypothetical protein OsI_03008 [Oryza sativa Indica Group]
          Length = 359

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 174/330 (52%), Gaps = 21/330 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +       +      AL
Sbjct: 15  GFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIV------DTAVREVQAL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H+V GTPGR+CD 
Sbjct: 69  ILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDM 128

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + SAT+   I  +  
Sbjct: 129 IKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTS 188

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRA 255
            +  D VR+ +  +      I  +   VA+   +   + + ++        A++FC+T+ 
Sbjct: 189 KFMTDPVRILVKRDELTLEGI--KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKR 246

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV+          L
Sbjct: 247 KVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTDVS----------L 296

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VI+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 297 VINYDLPNNRELYIHRIGRSGRFGRKGVAI 326


>gi|331219074|ref|XP_003322214.1| ATP-dependent RNA helicase DRS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309301204|gb|EFP77795.1| ATP-dependent RNA helicase DRS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 785

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/364 (29%), Positives = 193/364 (53%), Gaps = 35/364 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G  LS     + T +Q   +   L  KD++ S+ TGSGKT+ + + +   L+  + 
Sbjct: 257 PVLLG--LSSMSITSPTPIQRQAIPLGLLGKDLVCSSVTGSGKTLGYMVPIVERLIWRDK 314

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    +    + + PTRELAVQV +  + L   T +  ++C+GG+ +  +  +L+    I
Sbjct: 315 KGGGRTR--VMILTPTRELAVQVFQVGKLLARFTDLTFSLCVGGMDLRTQEAELRERPEI 372

Query: 128 VVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+GTPGR+ DHIR  +G ++  L+ +V+DEAD +L+ GF+D++E I+ + P+ R+ ++FS
Sbjct: 373 VIGTPGRVIDHIRNTRGFSLETLEILVIDEADRILEEGFQDELEEIISNCPRSRQTMLFS 432

Query: 187 ATISPAITTLAKNYQKDAVRVNI-------------------ASENRQH---SDIDYRAV 224
           AT++ ++  LAK      +R+ I                   ++ N++    +D+  +A+
Sbjct: 433 ATVNESVADLAKLSLDKPIRIKIDPPKSTAAGLTQEFLKVKDSASNKKAASLTDVTRQAI 492

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           LV L                   I+F  ++    R   + +    +   L G L+QQ+R 
Sbjct: 493 LVTLCK--------ASAFSKGRTIIFFRSKVGAHRMKIIFSLFSLKAEELHGNLNQQQRL 544

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            ALQ  +DG     +ATD+A+RG+D+  +E VI+ E  +  +  LHR GRT RAG KG +
Sbjct: 545 AALQKFKDGETSFLLATDLASRGLDIKGVERVINYEPPTQYDVYLHRIGRTARAGTKGSA 604

Query: 345 VFVI 348
           + ++
Sbjct: 605 LTLV 608


>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 579

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 5/335 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +  +G+   T +Q       L  ++++  A+TGSGKT+++ L  A   +   
Sbjct: 106 FPDYVLKEIKRQGFSEPTVIQAQGWPIALSGRNLVGIAKTGSGKTLSYILP-AIVHINHQ 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+ L +APTRELA Q+    E     +G+      GG     + RDL+ G  
Sbjct: 165 PRLQRGDGPIVLVLAPTRELAQQIKEVTEDFGHSSGIRNTCIFGGAKRLSQARDLEKGVE 224

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I +     R++LM+S
Sbjct: 225 IVIATPGRLLDFLDCGKTNLKRTTYLVLDEADRMLDMGFEPQIRKIFEQIKPDRQVLMWS 284

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILR---YH 242
           AT    +  LAK +  D  ++N+ S     +    + + V   S+++  +  +L+     
Sbjct: 285 ATWPKVVRNLAKEFLNDYTQINVGSLQLSANHNILQIIDVCQDSEKERKLSTLLKEIMSE 344

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +    +   ++ G+ +Q ER + LQ  R+GR  + +ATD
Sbjct: 345 KENKTIVFIETKKRVEEITRKMRRDGWPAESIHGDKNQSERDHVLQDFRNGRRPILVATD 404

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           VAARG+D+ D++ VI+ +  +N E+ +HR GRT +
Sbjct: 405 VAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTAK 439


>gi|189439512|ref|YP_001954593.1| superfamily II DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|189427947|gb|ACD98095.1| Superfamily II DNA and RNA helicase [Bifidobacterium longum DJO10A]
          Length = 728

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATTEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|146181280|ref|XP_001022468.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146144241|gb|EAS02223.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 749

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 191/379 (50%), Gaps = 29/379 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P  I +A+    Y   T +Q   +   L+ KD++  +QTG+GKT AF + L
Sbjct: 322 MRTWEEGELPPYILDAVRRSKYEKPTPIQMQTIPIGLQRKDLIGISQTGTGKTCAFLIPL 381

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + L  L   D       P AL + PTRELA Q+ +E + L +   +   V +GG     
Sbjct: 382 ITYLRSLPPMDEEIAKDGPYALILIPTRELAPQIEKEFQNLTSNMRMKSLVMVGGKDEGN 441

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-- 174
           +   L+ G  +++GT GR+ D +    L +  +  VVLDEAD+M+DL F  D+ FILD  
Sbjct: 442 QAFKLKLGCELLIGTVGRIKDALEKNYLVLDQVSWVVLDEADKMIDLNFEQDVNFILDKI 501

Query: 175 -----SSPKKRRML----------------MFSATISPAITTLAKNYQKDAVRVNIASEN 213
                S  +   +L                +FSAT+ P +  LAK Y +    ++I    
Sbjct: 502 RTNMKSEDENMAVLQEQEAKVGEKIFRVTHLFSATMPPNLERLAKKYLRSFCYISIGEAG 561

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               DI+     ++   + + +  IL        I+F + + +V + +K+L    +Q V 
Sbjct: 562 DAKKDIEQIVDFMSEGQKKSRLQKILE-TAKPPIIIFANEKTAVEKLSKILDRWGWQNVI 620

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
             G  +QQ+R  A+   + G+  + +ATD+ ARG+ +  +++VI+ +   N ++ +HR+G
Sbjct: 621 YHGGKTQQQREAAVDGFKKGKYDILVATDLGARGLHVDGVKMVINFDAPKNIKDFIHRTG 680

Query: 334 RTGRAGRKGMS-VFVIPQN 351
           RTGRAG++G++  FV   N
Sbjct: 681 RTGRAGKRGIAYTFVTNHN 699


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score =  170 bits (430), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 30/381 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           + I E +   GY   T VQ+  +      +D++  AQTGSGKT AF + L + +L +   
Sbjct: 175 EWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPD 234

Query: 67  --DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              R   +S       P AL ++PTREL++Q+  E      +T +  A+  GG   ++++
Sbjct: 235 AVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQ 294

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-- 175
              L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++   
Sbjct: 295 IHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNR 354

Query: 176 --SPKKRRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLVA 227
             S ++R   MFSAT    I  LA+++ K+        RV   SEN     I  + V V 
Sbjct: 355 MPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSEN-----IMQKIVWVE 409

Query: 228 LSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             ++ + ++++L   G  +  +VF  T+   S     L    ++VV + G+L Q ER   
Sbjct: 410 EDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKH 469

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++  
Sbjct: 470 LDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATS 529

Query: 347 VI---PQNMQRRAERLFREAN 364
                 +N+ R    L  EAN
Sbjct: 530 FFNDKNRNIARELMDLIVEAN 550


>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
 gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
          Length = 523

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 180/363 (49%), Gaps = 24/363 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAE 65
           P+++  A+ E GY   T +Q A +   L+++DV+  A TGSGKT AF + +   +  L +
Sbjct: 123 PEIL-RAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSRLPK 181

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APT ELA Q+  E   L     + V   + G ++  +   L  G 
Sbjct: 182 MTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLLQGC 241

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKK----- 179
            IV+ TPGRL  H   +G  + H    VVLDE D M+ LGF + +   L++ P       
Sbjct: 242 EIVIATPGRLL-HCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPSSNMKPE 300

Query: 180 -----------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                      R   MFSAT+ PA+  LAK Y ++ V V I   +++   I  + ++V  
Sbjct: 301 SEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKR---ISQKVMMVDE 357

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            ++   +  +L   G  + IVF +T+    + +K L +   +V  + G  +QQ+R    Q
Sbjct: 358 EEKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQTNFQ 417

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  R    IATDV  RGID+PD+  +++ ++ S  E  +HR GRTGRAG+ G +   +
Sbjct: 418 DFRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFL 477

Query: 349 PQN 351
             N
Sbjct: 478 TLN 480


>gi|168012549|ref|XP_001758964.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689663|gb|EDQ76033.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/332 (32%), Positives = 181/332 (54%), Gaps = 14/332 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++GE L + G+ + T +Q       ++ KDV+  A+TGSGKT+  G  + + L   + R 
Sbjct: 121 LLGE-LQKAGFSSPTPIQAQSWPIAMQSKDVVAVAKTGSGKTL--GYLVPAFLHLASHRN 177

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    P AL +APTREL +Q+  E       + +V     GG     + RD++ G  I +
Sbjct: 178 NSRKGPTALVLAPTRELVMQIHDECAKFGTSSDIVGTCLYGGAPKGPQLRDIERGVDIAI 237

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D + G+ +++  +  +VLDEAD MLD+GF   I  I++++  +R+ LM++AT 
Sbjct: 238 ATPGRLNDFLEGRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVENTSPQRQTLMYTATW 297

Query: 190 SPAITTLAKNYQKDAVRVNIASENR--------QHSDIDYRAVLVALS-DRDNAIVNILR 240
              +  +A ++  + V+V+I + +         Q + +    V V  S ++   +V +LR
Sbjct: 298 PRKVRRMAADFLSNPVQVSIGNVDEFTANKAITQANKLKRLHVEVVESCEKQRRLVEMLR 357

Query: 241 YH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FCST+ +    T+ L  H F   A+ G+ SQ ER + L   R+GR  V +
Sbjct: 358 SQEKGSRIIIFCSTKRACDTLTRCLG-HEFGAAAIHGDKSQDERESVLSHFRNGRTPVLV 416

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           ATDVAARG+D+ D+ +V++ +  S  ++ +HR
Sbjct: 417 ATDVAARGLDVKDIRVVVNYDFPSGIDHYVHR 448


>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Ciona intestinalis]
          Length = 727

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 172/337 (51%), Gaps = 3/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  +   T +Q   +   +  +DV+  A+TGSGKT AF   +   ++ +        
Sbjct: 257 AIRKHNFTQPTPIQAQGIPCGMSGRDVIGIAKTGSGKTAAFIWPMLVHIM-DQPELKKGD 315

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ L +APTREL  Q+  E +      G+    C GG ++H +++ L +G  IVV TPG
Sbjct: 316 GPVGLIVAPTRELCQQIYFECKRFGKVYGLRSVCCYGGGNMHEQQKGLSDGCEIVVATPG 375

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ DH++ K  N+  +  +V DEAD M ++GF   +  I +     R+ L+FSAT    I
Sbjct: 376 RIIDHVKKKNTNLLRVTYLVFDEADRMFEMGFEYQVRSIANHVRPDRQTLLFSATFRKRI 435

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGAKNAIVFC 251
             LA++   D VR+        ++D+     +   +D     +   I+ +    + +VF 
Sbjct: 436 ERLARDILTDPVRIIQGDVGEANADVTQIVEVFKTADMKWKWLLRRIIPFTSEGSLLVFV 495

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +A+       L      V  + G++ Q +R+N +   +  +    +ATDVAARG+D+P
Sbjct: 496 TKKANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKKKQVATLVATDVAARGLDIP 555

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  VI+ +++ + +   HR GRTGRAG+KG +  ++
Sbjct: 556 LIRNVINYDVARDIDTHTHRIGRTGRAGQKGTAYTLV 592


>gi|255534707|ref|YP_003095078.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340903|gb|ACU07016.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 450

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 186/349 (53%), Gaps = 17/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P+ I + L++      T +QE  + P L  +DV+  AQTG+GKT+A+ L +  T  
Sbjct: 9   FE-LPEKILDVLADSNLFEPTPIQEKTIKPILSGRDVMGIAQTGTGKTLAYLLPVLKTW- 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +++    P  L + PTREL VQV   ++ L       V    GGV++  ++    +
Sbjct: 67  ----KYNKNGNPTVLILVPTRELVVQVSEIVKNLTQHLTARVLGIYGGVNIKTQKLLFND 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ D      +++  ++ +++DE DEML+LGF+  +  I     +KR+ +
Sbjct: 123 GCDILVGTPGRIMDLAIDNAISLKEVQKLIVDEFDEMLNLGFKMQLTTIFTMMKEKRQNI 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT++ A+  +   Y  D V +++A       + + I Y+  +     + N + ++L+
Sbjct: 183 LFSATMTEAVDAVLYEYFADPVEISLAKSGTPLEKITQIGYK--VENFHTKINLLEHLLK 240

Query: 241 YHG-AKNAIVFCSTRASVSR-FTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRAR 296
                   ++FC+ + +    FTK+  + +F  Q   +    SQ  R NA++   +   R
Sbjct: 241 SDTDFSKVLIFCNNKRNADYLFTKI--DEIFPDQFDVIHSNKSQNYRLNAMRSFENKEVR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             I TD+ ARG+D+ D+  VI+ E+   PE  +HR GRTGRA + G++V
Sbjct: 299 GLITTDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKDGIAV 347


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 5/344 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I + +++ G+   T +Q+  +      +D++  AQTGSGKT AF L + S LL +    
Sbjct: 255 IIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 314

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G H+V+
Sbjct: 315 E-LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVI 373

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSA 187
            TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+   +   + + LMFSA
Sbjct: 374 ATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 433

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  +A  + K+ V V I       SD+      V    + + ++ IL    A   
Sbjct: 434 TFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQ-ADGT 492

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG
Sbjct: 493 IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 552

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           +D+ +++ VI+ ++ S  ++ +HR GRTG  G  G +  F  P+
Sbjct: 553 LDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPE 596


>gi|67522354|ref|XP_659238.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
 gi|40745598|gb|EAA64754.1| hypothetical protein AN1634.2 [Aspergillus nidulans FGSC A4]
          Length = 767

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 184/371 (49%), Gaps = 42/371 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E +   GY   T +Q A +   ++ +D++             G+A+  + L   
Sbjct: 353 LPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLI-------------GVAVTGSELPRI 399

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D F       P A+ +APTRELA Q+  E +      G  V   +GG S   +   L+NG
Sbjct: 400 DEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNG 459

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
           A I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P       
Sbjct: 460 AEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPD 519

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             + R+ +M++AT+  A+  +A+ Y +    V I S       +
Sbjct: 520 TEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTV 579

Query: 220 DYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R  ++A  D R   +  IL     +   IVF + + +     + + +  F  V L G 
Sbjct: 580 EQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGS 639

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LVI+  ++++ E+  HR GRTGR
Sbjct: 640 KTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGR 699

Query: 338 AGRKGMSVFVI 348
           AG+ G+++  +
Sbjct: 700 AGKSGVAITFL 710


>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
 gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
          Length = 908

 Score =  170 bits (430), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 185/379 (48%), Gaps = 39/379 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----- 60
           N+ +++   +    Y   T +Q+  L+  + + D++  AQTGSGKT  + L + +     
Sbjct: 338 NLHEILLANIKRVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPIINHMLLN 397

Query: 61  -----TLLAENDR-----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                T   EN R     ++    P+ L +APTRELAVQ+  + +    +TG+   V  G
Sbjct: 398 DPPKHTFYEENQRSSSYYYNRVCLPVCLILAPTRELAVQIFYDSKKFCFETGIKPVVLYG 457

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G ++  +  +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I 
Sbjct: 458 GSNIKMQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTSFLVLDEADRMLDMGFSPQIR 517

Query: 171 FIL--------DSSPK----------------KRRMLMFSATISPAITTLAKNYQKDAVR 206
            I+        D+  +                KR+ +MFSAT    I  LAK Y  +   
Sbjct: 518 SIMYDYDMPGNDNESRMNPNKMEYKRYTNEIVKRQTIMFSATFRKEIQVLAKEYLYNYTF 577

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           + I      +  I    + +   ++ N ++ +L  +     I+F  T+       + L  
Sbjct: 578 LLIGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADILERFLNN 637

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
                V + G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN +
Sbjct: 638 QKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINFDLPSNID 697

Query: 327 NLLHRSGRTGRAGRKGMSV 345
           + +HR GRTGRAG  G++ 
Sbjct: 698 DYIHRIGRTGRAGNIGIAT 716


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 30/381 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           + I E +   GY   T VQ+  +      +D++  AQTGSGKT AF + L + +L +   
Sbjct: 240 EWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPD 299

Query: 67  --DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              R   +S       P AL ++PTREL++Q+  E      +T +  A+  GG   ++++
Sbjct: 300 AVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQ 359

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-- 175
              L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++   
Sbjct: 360 IHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNR 419

Query: 176 --SPKKRRMLMFSATISPAITTLAKNYQKDAV------RVNIASENRQHSDIDYRAVLVA 227
             S ++R   MFSAT    I  LA+++ K+        RV   SEN     I  + V V 
Sbjct: 420 MPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSEN-----IMQKIVWVE 474

Query: 228 LSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             ++ + ++++L   G  +  +VF  T+   S     L    ++VV + G+L Q ER   
Sbjct: 475 EDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKH 534

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++  
Sbjct: 535 LDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATS 594

Query: 347 VI---PQNMQRRAERLFREAN 364
                 +N+ R    L  EAN
Sbjct: 595 FFNDKNRNIARELMDLIVEAN 615


>gi|15226161|ref|NP_178818.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75318697|sp|O80792|RH33_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 33
 gi|3327394|gb|AAC26676.1| putative RNA helicase [Arabidopsis thaliana]
 gi|330251036|gb|AEC06130.1| putative DEAD-box ATP-dependent RNA helicase 33 [Arabidopsis
           thaliana]
          Length = 845

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 42/388 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEND-RFS 70
           +ALS  G V +T VQ+A L+  L  KD LV A+TG+GK++AF L A+ + L A N  +  
Sbjct: 388 KALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGV 447

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN-GAHI 127
              AP+  L + PTRELA Q+  E + L     G+ V   IGG     +++ L++    I
Sbjct: 448 HKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQI 507

Query: 128 VVGTPGRLCDHIRGK-GLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++ TPGRL DHI  K GL   +  LK  ++DEAD +LDLGF+ D+E I+D  P++R+ L+
Sbjct: 508 LIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLL 567

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-------------RAVLVALSDR 231
           FSATI            K+  RV+     R HS ID              ++ +VA  + 
Sbjct: 568 FSATIP-----------KEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHES 616

Query: 232 DNAIV-NILRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              +V ++L+ H         IVFCST    S    +L E    V  +     Q  R+  
Sbjct: 617 HFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCV 676

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
               ++    + + +DV+ARG++ PD+ LVI   + S+ E  +HR GRTGR G+ G  + 
Sbjct: 677 SDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLL 736

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPS 374
           +I        ER F +    +  EP P+
Sbjct: 737 LIAP-----WERYFLDELKDLPLEPIPA 759


>gi|297263808|ref|XP_002798866.1| PREDICTED: ATP-dependent RNA helicase DDX55-like isoform 2 [Macaca
           mulatta]
          Length = 600

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/360 (33%), Positives = 191/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+  +T VQ A +   +R KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGA 125
           +   +    A+ I PTRELAVQ+   L            +  IGG +   +  R  Q G 
Sbjct: 77  KLKKSQVG-AIIITPTRELAVQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASE-------NRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  +  L +   ++ VRV++  +        +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVENLVRAGLRNPVRVSVKEKGVAASGAQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ LR    +  +VF ST A V  + K L   +   +++ + G++ + +R+      
Sbjct: 256 NQLVHFLRNRKQEKHLVFFSTCACVEYYGKALEALVKGVKIMCIHGKM-KYKRNKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 315 RKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|291001779|ref|XP_002683456.1| dead box RNA helicase [Naegleria gruberi]
 gi|284097085|gb|EFC50712.1| dead box RNA helicase [Naegleria gruberi]
          Length = 907

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 185/359 (51%), Gaps = 26/359 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q   +AL + G+V +  +Q+A +   L  +D+L +A+TGSGKT+AF L +   L  + 
Sbjct: 62  ISQYSKDALKKAGFVTMKDIQKASILHALGGRDILGAARTGSGKTLAFVLPVLELLYRK- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL ++P RELA Q+   L+           + +GG    +E ++     +
Sbjct: 121 -RWGKLDGLGALILSPNRELAQQIFEVLKLCGRYHHFSAGLLVGGTKNLKEEKEHICNMN 179

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL  H+    G   S+L+ +VLDEAD +L+LGFR+++  ILD  PK R+ L+F
Sbjct: 180 ILVATPGRLLQHMDETAGFICSNLQVLVLDEADRLLELGFRNELNSILDGLPKSRQTLLF 239

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH----------SDIDYRAVLVALSDRDNAI 235
           SAT +  I        KD  R++++  N ++            +    +   L D+ + +
Sbjct: 240 SATQTRDI--------KDLARLSLSKTNTEYISVHESEPVPKQLTQHYIECQLEDKIDIL 291

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRD 292
            + L+ H  K  IVF ST   VS F   + +HL    ++  L+G +SQ  R    +    
Sbjct: 292 FSFLKSHQNKKVIVFSSTVKQVS-FLHTVFKHLPLSVKMFKLAGRMSQGSRREMFEGFTS 350

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ 350
            +A V  ATD+AARG+D P ++ V+  +   +    +HR GRT R    G SV V+ PQ
Sbjct: 351 AKAAVLFATDIAARGLDFPRVDFVLQLDAPVSKAFYIHRMGRTARNDADGKSVVVVTPQ 409


>gi|47567847|ref|ZP_00238555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47555524|gb|EAL13867.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 436

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 186/359 (51%), Gaps = 12/359 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    ++  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCSEDQIITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L ++ N+ 
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEKQRNIE 368


>gi|83764585|dbj|BAE54729.1| unnamed protein product [Aspergillus oryzae]
          Length = 531

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 195/363 (53%), Gaps = 11/363 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L A   RF P +   A+
Sbjct: 73  GFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEMLSAL--RFKPRNGTGAI 130

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +++V TPGRL DH
Sbjct: 131 IVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDH 190

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTL 196
           ++  +G    +L+ +++DEAD +L++GF D++  I    P + R+ ++FSAT +  +  L
Sbjct: 191 LQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSENRQTMLFSATQTTKVEDL 250

Query: 197 AK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           A+ + +   + +N+    ++HS ++      V+     R   + + L+ +  K  IVF S
Sbjct: 251 ARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVFLS 309

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +  SV  + ++L      V+ L G+  QQ+R+N      + +    I TDVAARG+D+P 
Sbjct: 310 SCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPA 369

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           ++ +I  +   +P + +HR GRT R    KG S+  + Q  +    +  +EA V VV   
Sbjct: 370 VDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFL-QPSEVGFLKHLKEARVPVVEFD 428

Query: 372 APS 374
            P+
Sbjct: 429 FPT 431


>gi|322688929|ref|YP_004208663.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460265|dbj|BAJ70885.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 728

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATTEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|164424264|ref|XP_958421.2| eIF4A [Neurospora crassa OR74A]
 gi|161789047|sp|Q7RV88|IF4A_NEUCR RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|157070442|gb|EAA29185.2| eIF4A [Neurospora crassa OR74A]
          Length = 397

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 169/314 (53%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++         +  P+  A  A
Sbjct: 43  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ-------KIDPSLKACQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + ++ VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 336 INYDLPANRENYIH 349


>gi|193290168|ref|NP_001123270.1| pitchoune [Nasonia vitripennis]
          Length = 643

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 191/343 (55%), Gaps = 11/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+ ++T +Q   + P L  +D++ +A+TGSGKT++F   + +  L    +F P 
Sbjct: 154 KAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSF--LIPAVELIYKLKFMPR 211

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L         + +GG S   E + L  G +IVV TP
Sbjct: 212 NGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLSKGVNIVVATP 271

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--- 188
           GRL DH++        +L+ +++DEAD +LD+GF ++++ I++  PK+R+ ++FSAT   
Sbjct: 272 GRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKRRQTMLFSATQTK 331

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
            + A+TTLA   +K+ V V +  E  + +   ++   V      R   +   L+ +  K 
Sbjct: 332 KTEALTTLA--VKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLFTFLKKNRQKK 389

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S+  SV    ++L      V+++ G+  Q +R+       + ++ + + TDVAAR
Sbjct: 390 VMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLCTDVAAR 449

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           G+D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 450 GLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 492


>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 502

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 12/341 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E G    T VQ   +   L  KDVL  AQTGSGKT  F L +   L AE+          
Sbjct: 80  ELGMKRPTPVQAHCIPKILEGKDVLGLAQTGSGKTATFALPILHRL-AED-----PYGIF 133

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR-- 134
           AL I PTRELA Q+  +   L +   +  AV +GG+    + + L    H+V+ TPGR  
Sbjct: 134 ALVITPTRELAYQLAEQFRALGSCLNLRCAVVVGGMDKLTQAKTLMARPHVVIATPGRVK 193

Query: 135 -LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
            L +         S  K +VLDEAD +LD+GF D++  +    PK R+ L+FSAT++  +
Sbjct: 194 VLLEDNPDIPSVFSKTKFLVLDEADRVLDVGFEDELRVVFQCLPKNRQTLLFSATMTSNL 253

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH---GAKNAIVF 250
            +L +     A         +    +  + VLV  + +D  +V IL      G ++AI+F
Sbjct: 254 ESLLEVSANKAYFYEAYEGFKTVDTLKQQYVLVPKNVKDVYLVYILSKMEDMGIRSAIIF 313

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST  +    + +L E   +  AL    SQ  R +AL+  + G+A + IATDVA+RG+D+
Sbjct: 314 VSTCRTCYLLSLLLEELEKEPAALHSFKSQSLRLSALRRFKSGQASILIATDVASRGLDI 373

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           P ++LV++ +L   P + +HR GRT RAGR G+++  I QN
Sbjct: 374 PTVDLVVNYDLPRYPRDYVHRVGRTARAGRGGLAMSFISQN 414


>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 422

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 178/343 (51%), Gaps = 16/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T +Q   +   L   D +  A+TGSGKT+AF L +   L  E           AL
Sbjct: 22  GLTKPTPIQAHCIPKILEGNDCIGCAKTGSGKTLAFALPILQKLSEE------PFGIFAL 75

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNGAHIVVGTPGRLC 136
            + PTRELA Q+G +    Y K  + + +C+  GG+ +  + ++L    HIVV TPGRL 
Sbjct: 76  VLTPTRELAFQIGEQF-LAYGKV-INLKLCVISGGMDMVTQGQELSKRPHIVVSTPGRLA 133

Query: 137 DHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+      ++  ++ +VLDEAD +L   F D I  I  S P K+++L+FSATI+  +  
Sbjct: 134 DHLDSCNTFSLKKIRFLVLDEADRLLSGQFDDQISTIFKSLPLKKQILLFSATINDTLKQ 193

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA----IVFC 251
             +   K+       S+     ++    VL     +D  +V +++ +   N     I+F 
Sbjct: 194 AEELLSKNVFSFIDKSDVATVDNLQQFYVLCPDHVKDAYLVEVIQLYRKNNENGNIIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T  +    +  L E  F+ VA+   + Q+ER  AL   +    +  IATD+A+RG+D+P
Sbjct: 254 DTCRNCQLLSMTLNEVGFENVAIHSMMKQKERLAALSRFKSNIVKTLIATDIASRGLDIP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +ELVI+  + + P++ +HR GRT RAGR GMSV  V P +++
Sbjct: 314 TVELVINHSIPNVPKDYIHRVGRTARAGRAGMSVSLVTPVDIK 356


>gi|170780855|ref|YP_001709187.1| putative DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155423|emb|CAQ00530.1| putative DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 513

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 181/375 (48%), Gaps = 6/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+  G      +Q   L   L  +DVL   +TGSGKT+AF + + + L   
Sbjct: 10  GVPAPLVSALTANGITTPFPIQVDTLPDTLNGRDVLGRGKTGSGKTLAFAIPMIARLGGG 69

Query: 66  NDRFSPASAPLALAI-APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                         I APTRELA Q+   +  L     +      GGVS  R+   L+ G
Sbjct: 70  LAGGRRRPGRPLGLILAPTRELATQITAAMAPLAEAYNLTTTTIFGGVSQQRQVAALKAG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VV  PGRL D ++   +N+  ++  VLDEAD M DLGF   +  ILD +P   + ++
Sbjct: 130 VDVVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPNTGQRML 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++   N   + + +     +  +    +V  L   G+
Sbjct: 190 FSATLDNGVDKLVRRYLHDQVLHSVDEANSPVAAMTHHVFEASDVEAKRLLVQKL-AGGS 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+    +  K L +     V L G LSQ  R   L     G  +V +ATDVA
Sbjct: 249 GRRILFMRTKHHAKKLAKQLTDAGIPSVDLHGNLSQVARDRNLAAFSAGDVKVLVATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V ++    ++  + L R+A+
Sbjct: 309 ARGVHVDDIELVIHVDPPAEHKAYLHRSGRTARAGSAGDVVTIMLPAQRKDVQLLMRKAD 368

Query: 365 VSV----VWEPAPSV 375
           + V    V E +P+V
Sbjct: 369 IHVTPQQVTESSPAV 383


>gi|90081060|dbj|BAE90010.1| unnamed protein product [Macaca fascicularis]
          Length = 407

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+    E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILXKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score =  169 bits (429), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 179/346 (51%), Gaps = 14/346 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQV+   +  +G+ N T +Q   +   L  K++   AQTG+GKT+AF     + LL  + 
Sbjct: 18  PQVLA-GVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTFNYLLTHS- 75

Query: 68  RFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               ASA      P  L +APTRELAVQ+  +   +    G  + +  GG    ++   L
Sbjct: 76  ----ASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q G  +++GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI F+      P +
Sbjct: 132 QEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMPPPAQ 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA  +  +   + I  E      I       +  D+   ++ ++
Sbjct: 192 RLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDKMLLLLTLM 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+F +T+         L     +V  L+G++ Q++R   L+    G   V +
Sbjct: 252 EEDWPEKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLLDVLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+ +PD+  V + +L  + E+ +HR GRTGRAGR G ++
Sbjct: 312 ATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAI 357


>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
 gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
          Length = 749

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 185/349 (53%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A +  GY + T +Q+A +   L  KD+   A TG+GKT AF L +   ++  
Sbjct: 161 NLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPILERMIY- 219

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   L++G 
Sbjct: 220 --RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGP 277

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+      N+  ++ +VLDEAD ML+  FRD +  ++    + R+ L+
Sbjct: 278 DVVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAENRQTLL 337

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT++  I  LA    +  V++ I +EN   + +  R   + +     +DR++ +  ++
Sbjct: 338 FSATMTEEIDELASMSLQRPVKIFI-NEN-TDTALKLRQEFIRIRAGRETDRESMVAALV 395

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 N IVF  T+    R   +L     +V  +   L+Q +R  +L   + G   V +
Sbjct: 396 TRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKGEIDVLV 455

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +TD+A+RG+D+  ++ VI+  +  + +  +HR GRT RAG+ G S+ ++
Sbjct: 456 STDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLV 504


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/353 (33%), Positives = 182/353 (51%), Gaps = 22/353 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           N+ + I   + + GY   T VQ+    I+N D   +D++  AQTGSGKT AF L + + L
Sbjct: 115 NLQETILVNVQKAGYDRPTPVQKYSIPIINAD---RDLMACAQTGSGKTAAFLLPVLTKL 171

Query: 63  L---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +    ++  FS    P A+ I PTREL  Q+  E       T +   V  GG SV  + R
Sbjct: 172 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 231

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  +  L   P
Sbjct: 232 AVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMP 291

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +K  R  LMFSAT    I  LA ++ ++D + + +       SD+    + V   D+ + 
Sbjct: 292 QKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSK 351

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ ++          +VF  T+        VL +  F   ++ G+  QQ+R  AL   RD
Sbjct: 352 LLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQAL---RD 408

Query: 293 GRARVC---IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
            +  VC   +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G
Sbjct: 409 FKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLG 461


>gi|49072840|gb|AAT51707.1| DEAD box RNA helicase [Choristoneura fumiferana]
          Length = 1012

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 196/371 (52%), Gaps = 16/371 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  +D++  A+TGSGKT+AF L +   +L ++        P++L + PT
Sbjct: 375 TPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHVLDQSP-LEDTDGPISLIMTPT 433

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---R 140
           REL +Q+G+++       G+ V    GG  +  +  +L+ GA I+V TPGR+ D +    
Sbjct: 434 RELCMQIGKDIRKFAKSLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANS 493

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
           G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT    +  LA+  
Sbjct: 494 GRVTNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIRPDRQTVMFSATFPRQMEALARRI 553

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGAKNAIVFCSTRAS 256
            +  + + +   +    D++     VA+ + D     +L     Y    + IVF   + +
Sbjct: 554 LQKPIEIQVGGRSVVCKDVEQH---VAILEDDAKFFKLLELLGLYSQLGSIIVFVDKQEN 610

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K L +  +  ++L G + Q +R + +   ++G+ ++ +AT VAARG+D+  L LV
Sbjct: 611 ADSLLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAARGLDVKQLVLV 670

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           ++ +  ++ E+ +HR GRTGRAG KG +  F+ P+   R A  + R   +S    P P++
Sbjct: 671 VNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQ-GRYAGDVLRAMELSGAVVP-PTL 728

Query: 376 EAIRE--RDAQ 384
            A+ +  +DAQ
Sbjct: 729 RALWDSYKDAQ 739


>gi|58268018|ref|XP_571165.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|74685312|sp|Q5KHB7|DBP3_CRYNE RecName: Full=ATP-dependent RNA helicase DBP3
 gi|57227399|gb|AAW43858.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 605

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 177/345 (51%), Gaps = 27/345 (7%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLA-------LASTLLAENDRFSPASAPLALAIAPTRELA 87
           L +KDV+  A+TGSGKT+AFG+        L     ++  R         L +APTRELA
Sbjct: 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNI 146
            Q    L     + G+      GGV    + R+L Q    +VVGTPGR  D      L++
Sbjct: 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLADSGELDL 327

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQKD 203
           S +  +VLDEAD MLD GF +DI  I+  +P   + R+ +MFSAT   ++  LA  +  +
Sbjct: 328 SSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNN 387

Query: 204 AVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILRYH---------GAKNAIVF 250
            +R+ + S+    N++   I    VL    D+D  + + L+ H              +VF
Sbjct: 388 PLRITVGSDELSANKRIEQI--VEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVF 445

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +    R    +    + V AL G+++Q+ R  AL+  + G+  V +ATDVAARG+D+
Sbjct: 446 ALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDI 505

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           PD+ LVI+       E+ +HR GRTGRAG+ G +V F   +N ++
Sbjct: 506 PDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEK 550


>gi|45201092|ref|NP_986662.1| AGL004Cp [Ashbya gossypii ATCC 10895]
 gi|44985875|gb|AAS54486.1| AGL004Cp [Ashbya gossypii ATCC 10895]
          Length = 642

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 23/361 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+   GY  +T VQ + +    R KDV+V + TGSGKTVAF + +   ++ ++   S
Sbjct: 61  IRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSS 120

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWL--YAKTG--VVVAVCIGGVSVHRERRD---- 120
                    + I+PTRELA Q+   +E    Y   G   + +  + G +    R D    
Sbjct: 121 KLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAF 180

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   I+VGTPGRL D ++   +  S   A +LDEAD++LD+ F  D+E IL   PK+R
Sbjct: 181 LEHRPQILVGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQR 240

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSAT+S A T + K   ++ V+V++ + N+  S +D   +++    +   ++ +L 
Sbjct: 241 RTGLFSATVSSAGTQVFKTGMRNPVKVSVKTSNKAPSSLDINYIVIEPRMKLQLLLTLLN 300

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMMR 291
            +  K  IV+  T  +V+ F  +L +HL          ++ +L G+L    R   L    
Sbjct: 301 NYRYKKCIVYLPTCIAVTYFYSIL-QHLAKLNKMDENLKLYSLHGKLLTNSRMKTLDRFT 359

Query: 292 D--GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
              G+A V + TDVAARGID+PD++LV+  +   + +  LHR GR GRA R G ++  + 
Sbjct: 360 QELGKA-VLLTTDVAARGIDIPDIDLVLQMDPPIDADIFLHRCGRAGRANRAGRAIVFLN 418

Query: 350 Q 350
           Q
Sbjct: 419 Q 419


>gi|260947074|ref|XP_002617834.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
 gi|238847706|gb|EEQ37170.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
          Length = 896

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 187/369 (50%), Gaps = 18/369 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   L   +  +D+L  A+TGSGKT+AF L +   +  E    S    P+AL 
Sbjct: 318 YKKPTPIQCQALPIIMSGRDILSIAKTGSGKTMAFVLPMLRHV-QEQPPLSKGDGPIALL 376

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q+ ++L     K G+    C GG S+  +  +L+ G  +VV TPGRL D +
Sbjct: 377 LSPTRELALQIFKQLSIFTKKLGISACCCYGGSSIELQIAELKKGCQVVVSTPGRLIDLL 436

Query: 140 RGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
              G    N+  +  VVLDEAD M D GF   +  I       R+ ++FSAT +  +  L
Sbjct: 437 AANGGRVCNLRRVTYVVLDEADRMFDFGFEPQVNKIFSQVRPDRQSILFSATFARKMEML 496

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----------AIVNILRYHGAKN 246
           AK    D ++V +   +    +I  R  L  +++ DN           ++ +L+   +  
Sbjct: 497 AKAILHDPIQVIVGGISVVSQEITQRVELFEVTENDNEDTIEKRKFEKLLKVLKEFPSTK 556

Query: 247 AIVFCSTRASVSRF-TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA--RVCIATDV 303
            ++F   + S  +   K+L E++   + + G   Q +R  A++   D  +   V IAT +
Sbjct: 557 KLIFVEKQDSADKLMVKLLTENI-PSLTIHGGKEQIDRKYAIKNFSDNDSGVDVLIATSI 615

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L LV++ + +++ E+ +HR GRTGRAG  G++   +    +R    L +  
Sbjct: 616 AARGLDVKGLGLVVNYDPANHMEDYVHRVGRTGRAGNTGVAYTFVTSKQERPITDLVKAM 675

Query: 364 NVSVVWEPA 372
            +S + E A
Sbjct: 676 RLSKMPEDA 684


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 31/341 (9%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AF L     +  +  R      P  L + PTRELA QV +E+   
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQPHR-QRGEGPSVLVLLPTRELAQQV-QEVSID 224

Query: 98  YAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +  + G+ +    GG S   + RDL+ G  I V TPGRL D +     N+     +VLDE
Sbjct: 225 FCHSLGLKMTCLFGGASKGPQARDLERGVDIAVATPGRLLDFLDNGTTNMKRCSYLVLDE 284

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF   I  I+      R+ LMFSAT    + +LA ++QKDA  +N+ S     
Sbjct: 285 ADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATWPKEVRSLASDFQKDAAFLNVGS----- 339

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAK----------------NAIVFCSTRASVSRF 260
                  + +A +     +V++L  H  +                  I+F  T+      
Sbjct: 340 -------LELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADEL 392

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATDVAARG+D+ D++ VI+ +
Sbjct: 393 TRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVAARGLDVDDIKFVINYD 452

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
             +N E+ +HR GRTGR  +KG +          +A+ L +
Sbjct: 453 YPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAKDLLK 493


>gi|195060349|ref|XP_001995786.1| GH17577 [Drosophila grimshawi]
 gi|193896572|gb|EDV95438.1| GH17577 [Drosophila grimshawi]
          Length = 1302

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 183/344 (53%), Gaps = 6/344 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 586 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPTLEDG 644

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
              +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V TP
Sbjct: 645 DGAIAIIMAPTRELCMQIGKDIRRFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTP 704

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 705 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATF 764

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAI 248
              +  LA+   K  V V +   +    D++   V++    +   ++ +L  Y    + I
Sbjct: 765 PRQMEALARRILKKPVEVIVGGRSVVCKDVEQHVVILNDEAKFFKLLELLGIYQETGSII 824

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     + L    +  ++L G + Q +R + +   + G+ R+ IAT VAARG+
Sbjct: 825 VFVDKQENADILLRDLMRASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGL 884

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +  F+ P+ 
Sbjct: 885 DVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQ 928


>gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca
           mulatta]
          Length = 971

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 603 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 662

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 663 ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 716

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 717 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 776

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 777 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 836

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 837 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 896

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 897 LARGIDVQQVSLVINYDLPTNRENYIH 923


>gi|239621986|ref|ZP_04665017.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|317482249|ref|ZP_07941270.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|239515177|gb|EEQ55044.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|316916265|gb|EFV37666.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 712

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 36  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 95

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 96  ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 154 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 213

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 214 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPDLMTHHVFETTRGDKHELVR 271

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 272 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 330

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 331 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 390

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 391 RLLNQAGIKTKMIEVTHDSPEV 412


>gi|169605485|ref|XP_001796163.1| hypothetical protein SNOG_05766 [Phaeosphaeria nodorum SN15]
 gi|160706772|gb|EAT86830.2| hypothetical protein SNOG_05766 [Phaeosphaeria nodorum SN15]
          Length = 589

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 192/342 (56%), Gaps = 18/342 (5%)

Query: 43  SAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYA 99
           +A+TGSGKT+AF L  A  +L+ + RF P +    + ++PTRELA+Q   V REL   ++
Sbjct: 153 TAKTGSGKTLAF-LIPAIEMLS-SMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHS 210

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEAD 158
           +T     + IGG +   E   L  G ++++ TPGRL DH+   +G    +LK++++DEAD
Sbjct: 211 QT---FGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEAD 267

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHS 217
            +L++GF D++  I+   P  R+ ++FSAT +  +  LA+ + +   + +N+    ++HS
Sbjct: 268 RILEVGFEDEMRSIIKILPTDRQTMLFSATQTTKVEDLARISLKAGPLYINV-DYRKEHS 326

Query: 218 DIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            ++       + D D     + + L+ H  K  IVF S+  SV  + ++L      V+ L
Sbjct: 327 TVEGLEQGYVICDSDTRFRLLFSFLKKHQKKKVIVFFSSCNSVKFYAELLNYIDLPVLEL 386

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+L QQ R+N      + ++   I TDVAARG+D+P+++ VI  +   +P + +HR GR
Sbjct: 387 HGKLKQQARTNRFFEFCNAQSGTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGR 446

Query: 335 TGRAGR-KGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPS 374
           T R    KG S+ F++P  +     +L +EA V +V    P+
Sbjct: 447 TARGSEGKGRSLMFLLPSEIGFL--KLLKEARVPLVEFELPA 486


>gi|90101760|sp|Q750F8|SPB4_ASHGO RecName: Full=ATP-dependent rRNA helicase SPB4
          Length = 599

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 119/361 (32%), Positives = 191/361 (52%), Gaps = 23/361 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+   GY  +T VQ + +    R KDV+V + TGSGKTVAF + +   ++ ++   S
Sbjct: 18  IRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSS 77

Query: 71  PASAPL--ALAIAPTRELAVQVGRELEWL--YAKTG--VVVAVCIGGVSVHRERRD---- 120
                    + I+PTRELA Q+   +E    Y   G   + +  + G +    R D    
Sbjct: 78  KLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAF 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   I+VGTPGRL D ++   +  S   A +LDEAD++LD+ F  D+E IL   PK+R
Sbjct: 138 LEHRPQILVGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLDMNFEKDVETILKMLPKQR 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSAT+S A T + K   ++ V+V++ + N+  S +D   +++    +   ++ +L 
Sbjct: 198 RTGLFSATVSSAGTQVFKTGMRNPVKVSVKTSNKAPSSLDINYIVIEPRMKLQLLLTLLN 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMMR 291
            +  K  IV+  T  +V+ F  +L +HL          ++ +L G+L    R   L    
Sbjct: 258 NYRYKKCIVYLPTCIAVTYFYSIL-QHLAKLNKMDENLKLYSLHGKLLTNSRMKTLDRFT 316

Query: 292 D--GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
              G+A V + TDVAARGID+PD++LV+  +   + +  LHR GR GRA R G ++  + 
Sbjct: 317 QELGKA-VLLTTDVAARGIDIPDIDLVLQMDPPIDADIFLHRCGRAGRANRAGRAIVFLN 375

Query: 350 Q 350
           Q
Sbjct: 376 Q 376


>gi|328720638|ref|XP_001950474.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Acyrthosiphon pisum]
          Length = 470

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/351 (31%), Positives = 182/351 (51%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + L   G  + T +Q+  +   L   D +  A+TGSGKT+AF L +   L  E
Sbjct: 7   NLSKYLCDQLKAVGVNSPTEIQKNCIPKILDGIDCIGCAKTGSGKTLAFALPILQKLWEE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA Q+  +   +     +   V  GG+ +  + R+L N  
Sbjct: 67  ------PYGIFALILTPTRELAYQIADQFAVIGKPKNLRHCVVTGGMEMIVQARELSNKP 120

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HIVV TPGRL DH+      ++  ++ +VLDEAD +L   F   I  I  + PK+R+ L+
Sbjct: 121 HIVVSTPGRLADHLESCDTFSLKRIQFLVLDEADRLLGGKFDKQIATIFKALPKERQTLL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  +    +K+       +E +   +++   VL   + +D  +V I+R    
Sbjct: 181 FSATMTDTLEKVKMITKKNTFVYESTAEVKTVDELEQFYVLCPYNVKDGYLVEIVRQFRE 240

Query: 245 KNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           K+     ++F  T  +       L E  F  V+L   +SQ++R   L   +   +++ IA
Sbjct: 241 KDEKGLIMIFTDTCKNCQLLHMTLNEVGFDTVSLHAMISQRQRLAGLAKFKSHVSKILIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           TDVA+RG+D+P + LVI+  + +N  + +HR GRT RAGR+G +V ++ Q+
Sbjct: 301 TDVASRGLDIPAVSLVINHIIPNNATDYVHRVGRTARAGRQGRAVSIVTQH 351


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 186/358 (51%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +   +  +     P 
Sbjct: 450 DTIKKLGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHV-KDQPPVVPG 508

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL VQ+  +++      G+      GG  V ++  +L+ GA IVV TP
Sbjct: 509 DGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCVAIYGGSGVAQQISELKRGAEIVVCTP 568

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ ++   R+ ++FSAT 
Sbjct: 569 GRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATF 628

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V + +   +  + DI     +   ++R   ++ +L  ++     +
Sbjct: 629 PRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPDTERFFRLLELLGEWYVKGKIL 688

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  ++       K L +H +  ++L G   Q +R + +   +     + IAT VAARG+
Sbjct: 689 VFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTIADFKSNVCSLLIATSVAARGL 748

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R A  L +   +S
Sbjct: 749 DVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALELS 806


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 182/373 (48%), Gaps = 37/373 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +S   Y   T +Q+  +   L  +D++  AQTGSGKT AF   + + +L +     P 
Sbjct: 243 QNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDGPPPLPQ 302

Query: 73  SA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +A             P+ L ++PTRELA+Q+  E       TGV      GG  V R+  
Sbjct: 303 AAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGGSDVKRQLI 362

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---- 175
           DL  G  I V TPGRL D +  + + +  ++  VLDEAD MLD+GF   I+ I++S    
Sbjct: 363 DLDGGCDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIVESFDLP 422

Query: 176 -SPKK-------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
            SP                     R+ +MFSAT    I  LAK++ +D + + +      
Sbjct: 423 PSPTPQTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYLAVGRVGST 482

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I  R        +   +V +LR       I+F  T+         L +  F  V++ 
Sbjct: 483 NEFIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIEDYLVDDDFPAVSIH 542

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ +QQER  AL++ +  +  + +ATDVAARG+D+ ++  VI+ +L +N ++ +HR GRT
Sbjct: 543 GDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPTNIDDYVHRIGRT 602

Query: 336 GRAGRKGMSVFVI 348
           GRAG  G++   +
Sbjct: 603 GRAGNLGLATSFV 615


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 171/332 (51%), Gaps = 1/332 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+++GY   T +Q   +   L  +D+   AQTGSGKT AF + +   L + + +   A
Sbjct: 15  KTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPMIENL-SRSKQVVKA 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  ++E       +  AV  GG     + R L  G  +++ TP
Sbjct: 74  KRARALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQVRKLATGVDLLIATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++   + +  L+  VLDEAD MLD+GF  DIE I++  PKKR+ L FSAT+   
Sbjct: 134 GRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEKIIERLPKKRQTLFFSATMPKD 193

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I+ LA         + ++  +     I    + +    +   +  I+    +++ IVF  
Sbjct: 194 ISKLASTILTRPKIIEVSPPSTPVESIAQYLIHIDRVQKPKLLKKIINESVSESVIVFTR 253

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+    R  K L +   +  ++    SQ  R  AL   R+ + +  +ATD+AARGID+  
Sbjct: 254 TKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKALVATDIAARGIDVDG 313

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +  VI+ ++    E+ +HR GRT RAG+ G++
Sbjct: 314 ISHVINYDVPLEAESYIHRIGRTARAGKSGVA 345


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 188/349 (53%), Gaps = 16/349 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F + P +        G+   + +Q       ++ +D++  A+TGSGKT+ + +     L 
Sbjct: 233 FNSYPVLPANGRMIAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQ 292

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCI-GGVSVHRERR 119
            +  + R  P      L ++PTRELA Q+  ++E L + K+  +   C+ GG     + +
Sbjct: 293 RIHNDSRMGPT----ILVLSPTRELATQI--QVEALKFGKSSKISCACLYGGAPKGPQLK 346

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +++ G  IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I++  P K
Sbjct: 347 EIERGVDIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK 406

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ LM++AT    +  +A +   +  +VNI +  E   +  I     ++A  ++ + +  
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQ 466

Query: 238 ILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           ILR    G+K  I+FCST+    +  + L    F   A+ G+ SQ ER + L   R GR 
Sbjct: 467 ILRSQEPGSK-IIIFCSTKRMCDQLARNLT-RTFGAAAIHGDKSQAERDDVLNQFRSGRT 524

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            V +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLA 573


>gi|291391442|ref|XP_002712440.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Oryctolagus
           cuniculus]
          Length = 665

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 202/360 (56%), Gaps = 14/360 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F+++  ++ E    A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + 
Sbjct: 174 FDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAF--LIP 231

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  L    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 232 AVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 291

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P 
Sbjct: 292 KLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 351

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   +
Sbjct: 352 RRQTMLFSATQTRKVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLL 410

Query: 236 V-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 411 LFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNAD 470

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 471 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 530


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 115/318 (36%), Positives = 171/318 (53%), Gaps = 17/318 (5%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D++  A TGSGKT+AF L     ++    R   A+ PLAL +APTRELA Q+    + + 
Sbjct: 546 DLVGLAATGSGKTLAFLLPALMEIIKHPKRKYGAT-PLALVMAPTRELAQQIEEVCKNVV 604

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
             T +      GG     + R L++G  I+VGTPGRL D +    L    +K +VLDEAD
Sbjct: 605 KGTAIRQLCVYGGTGKGLQVRSLRSGVDIIVGTPGRLNDLLTPNHLET--VKFLVLDEAD 662

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
            MLD+GF   IE I++  PK+R+ LMFSAT    + +L+  +    VRV + +     ++
Sbjct: 663 RMLDMGFMPQIEKIINQVPKERQTLMFSATWPREVESLSNRFLNKPVRVTVGN-TELSAN 721

Query: 219 IDYRAVLVALSDRDNAIV------NILRYHGAKNA----IVFCSTRASVSRFTKVLAE-- 266
           I+    +VA +      V       I   H         IVFC+ + +   F++ L    
Sbjct: 722 INVHQHIVATTGMTRPDVAKMVGEQIQEIHNQDKKDNLIIVFCNQKRNCDHFSEYLYNEF 781

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
            +  VV  SG+  Q +R   L   +  R  + IATDVAARG+D+P+++ V++ +  +N E
Sbjct: 782 QMNSVVMHSGK-EQYQRERGLANFKSHRIPIMIATDVAARGLDIPNVKAVVNLDFPNNIE 840

Query: 327 NLLHRSGRTGRAGRKGMS 344
           + +HR GRTGRAG+KG S
Sbjct: 841 DYVHRIGRTGRAGKKGDS 858


>gi|23465483|ref|NP_696086.1| ATP-dependent RNA helicase [Bifidobacterium longum NCC2705]
 gi|23326139|gb|AAN24722.1| possible ATP-dependent RNA helicase [Bifidobacterium longum
           NCC2705]
          Length = 728

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|67469545|ref|XP_650751.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56467402|gb|EAL45363.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 585

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/356 (29%), Positives = 176/356 (49%), Gaps = 25/356 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--AENDRFSPASAPLA 77
           Y N T +Q A +   L+ +D++  A+TG+GKT A+ + L   +L   +    + AS P A
Sbjct: 196 YENPTPIQCASIPIALKMRDLIALAETGTGKTFAYLIPLIQFVLKLPKLTEETSASGPYA 255

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+Q+ +E   L    G+ V  CIGG  +  +  +L NGA IVV  PGRL D
Sbjct: 256 LVLAPTRELALQIQKETLKLATPFGLRVCCCIGGEPMQPQIEELSNGAEIVVAAPGRLKD 315

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS---------------------- 175
            +    L +     VVLDEAD+M+DLG    + +I                         
Sbjct: 316 LLNQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSELPSVKDGSTEEIISMEKENASG 375

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P  R  LM+SAT+   +  +   Y +  + ++I        ++    + V  + +   +
Sbjct: 376 NPSTRTTLMYSATMPSTLEKITNEYLRRPITISIGKTGNVAENVKQNILWVEDNMKKRKL 435

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +++   +   IVF + + +V     +L +     + + G   Q ER++AL   +  + 
Sbjct: 436 IQVIK-SSSPPTIVFVNQQKTVEEICLLLEKEKINCIGIHGGKRQIERTDALDGFKRKKY 494

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            V +AT++ +RGID+  +  VI+ E+    E   HR GRTGRAG+ G ++  I +N
Sbjct: 495 SVMVATNILSRGIDIESVANVINYEMPQKIEEYTHRVGRTGRAGKGGNAITFINEN 550


>gi|216397600|gb|ACJ72832.1| DEAD box polypeptide 18 (predicted) [Oryctolagus cuniculus]
          Length = 622

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 195/359 (54%), Gaps = 12/359 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F+++  ++ E    A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + 
Sbjct: 131 FDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAF--LIP 188

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  L    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 189 AVELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ 248

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P 
Sbjct: 249 KLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT 308

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K+ + V +  +  N     ++   V+     R   +
Sbjct: 309 RRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLL 368

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  +
Sbjct: 369 FTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADS 428

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
            + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 429 GILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 487


>gi|126664279|ref|ZP_01735270.1| ATP-independent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623699|gb|EAZ94396.1| ATP-independent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 463

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 11/339 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  +L  +Q A  +  L+E ++L+ + TGSGKT+AF L +   +  E            L
Sbjct: 15  GIQSLNKMQVAAESAILKENNILLLSPTGSGKTLAFLLPIFQMMEEE------VKGVQCL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + P+REL +Q+  E  W    T   V  C GG S+  E ++L N   +++GTPGR+ DH
Sbjct: 69  ILVPSRELGLQI--EQVWKKMGTHFKVNTCYGGHSIETEFKNLSNPPALLIGTPGRIADH 126

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I        ++K  VLDE D+ L LGF +++++I+    K  + ++ SAT    I    +
Sbjct: 127 IERNSFATENVKTYVLDEFDKSLQLGFHEEMKYIIGKITKVNKRILVSATSGVEIPKYTQ 186

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                 +  +     +Q+ ++D R V     D+  ++  ++    ++ AI+FC+ R +V 
Sbjct: 187 VVNPKVL--DFIPNTKQNDNLDVRIVFSKSKDKIESLFQLICSLNSEAAIIFCNHREAVE 244

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R   +L E         G L Q ER  AL   R+G     I TD+ ARG+D+P++  VIH
Sbjct: 245 RIHDMLTEKGIISTFYHGGLDQDERERALIQFRNGSVSYLITTDLGARGLDIPEMNHVIH 304

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             L +  +   HR+GRT R    G + +V+    +++A+
Sbjct: 305 YHLPAKEDEFTHRNGRTARMLATG-TAYVVIHETEKKAD 342


>gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39]
          Length = 484

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 9/346 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L +   +         A+ 
Sbjct: 37  LETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPILEQIDVH------AAG 90

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+QV   +        + V    GG S+ R+ + L+ G  +VVGTPGR
Sbjct: 91  IQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQRLRRGVQVVVGTPGR 150

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMFSATISPAI 193
           + D +    L +  L+ +VLDEADEML +GF  D+E IL+S+  + R+   FSAT+  +I
Sbjct: 151 ILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSEHRQTAFFSATMDASI 210

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCS 252
           + L + + K  V V + +       I+    +V     +  A+  IL     ++AI+F  
Sbjct: 211 SKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEPILELEDPESAIIFVR 270

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ S +  T  L      V    G L+Q +R   L  +R  + R  +ATD+AARG+D+  
Sbjct: 271 TKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRWIVATDIAARGLDVDH 330

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           L  VI+ +L    ++ +HR GRTGRAGR+G ++ +I Q + RR  R
Sbjct: 331 LTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLI-QPIDRRKLR 375


>gi|227545965|ref|ZP_03976014.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213599|gb|EEI81448.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 728

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 200/418 (47%), Gaps = 29/418 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P V+G  +   GY   T +Q  ++   L E+D+L SA TGSGKT AF L      L +
Sbjct: 229 QFPPVLGSNIKAAGYEVPTPIQMQMIPVGLMERDILASADTGSGKTAAFLLPAIIRCLEK 288

Query: 66  NDRFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            D      +P AL + PTRELAVQ+ G+  E +     +  A+ +GG+ +  +   L+  
Sbjct: 289 KD------SPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHRLKQA 342

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL + I    +N+  LK +++DEAD ML +GF+  +  IL+ +    + ++
Sbjct: 343 VQIIIATPGRLLEIINQDCVNLGDLKILIVDEADTMLKMGFQQQVLDILEHASHDHQTIL 402

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
            SATI   I    K   +D VR+ +  +N+  S++    + V    +   +  IL     
Sbjct: 403 VSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQIVLWVEEPSKKKKLFEILNDSKL 462

Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +VF   R      +  + +    + VA+  + SQ ER   LQ +  G   V ++T
Sbjct: 463 FQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGLLQGEYDVVVST 522

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            V  RG+DL +++LV++ ++  + +  +H+ GR GR G +G ++ +I +N          
Sbjct: 523 GVLGRGLDLVNVKLVVNFDMPPSMDEYVHQIGRAGRLGHRGTAITLINRN---------- 572

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             N S+ W+    V+        ++L  P   +  + DE+        + D EK+  G
Sbjct: 573 --NRSLFWDLVKRVQPTGSLLPPQLLNSPYLQEQKKVDER-------GRRDKEKVVTG 621


>gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + R + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWRLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
 gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 420

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 188/346 (54%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     L+
Sbjct: 6   FQLDPSLL-ESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R+S  +  L L   PTRELA Q+ R    L    G+ +A+  GGV    +   L+ 
Sbjct: 65  DFPRRYSGQARVLILT--PTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNIL 239
           +FSAT+    +   A+    D + +++ +  ++ + I ++ + +A  D+D+ I    ++L
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLA-DDKDHKIALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score =  169 bits (429), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 175/334 (52%), Gaps = 8/334 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G      VQE  +      +DV+  AQTG+GKT+AF + LA  +       +  
Sbjct: 16  EQLQKMGIKKPMPVQEQAIPALFAGRDVIARAQTGTGKTLAFLVPLAEKI------DTAK 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL I PTRELA Q+  E++ +  ++ + V    GG     ++  L+  +H+++GTP
Sbjct: 70  SYVQALVITPTRELAQQIATEMKKILGESDIKVLAVTGGRDFETQKYKLEGRSHVLIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKRRMLMFSATISP 191
           GRL DHIR    ++  ++ +VLDE DEML  GF D+ +E I  ++P+ + ML  SAT+S 
Sbjct: 130 GRLLDHIRKGNTDLGGVRYLVLDEVDEMLQQGFMDEALELIAMTAPEHQTMLC-SATLSE 188

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  L +   K+   ++I  +      I    +      ++ A+  ++        IVFC
Sbjct: 189 EVRKLGRKLTKNCALIDINPDQATVEKIKQVCLKTTDEYKNKAVAALIDRLNPYLMIVFC 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            ++         L    + V  L GE+S  +R   ++  RD + ++ +A+D+AARG+D+ 
Sbjct: 249 MSKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMKAFRDAKIQILVASDLAARGLDVE 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  V++ ++  + +  +HR GRTGRAG +G ++
Sbjct: 309 GVTHVVNYDIPHDVDWYVHRIGRTGRAGNEGEAI 342


>gi|302691820|ref|XP_003035589.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
 gi|300109285|gb|EFJ00687.1| hypothetical protein SCHCODRAFT_65225 [Schizophyllum commune H4-8]
          Length = 397

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L              AL
Sbjct: 43  GFERPSAIQQRAIVPVVKGHDVIAQAQSGTGKTATFSISILQQLDM------SIKGTQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     +    C+GG  V  +   LQ G H+VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVIALGDYMNIECHACVGGTVVREDIAKLQEGVHVVVGTPGRVHDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L   ++K   LDEADEML  GF+D I  +    P+  ++++ SAT+   +  + K
Sbjct: 157 INRRALRTDNIKIFCLDEADEMLSRGFKDQIYEVFQLLPQDIQVVLLSATMPAEVLEVTK 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMREPVRILVKRDELTLEGIKQFYIAVEREEWKLDTLCDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V A+ G++ Q++R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 277 DWLTEKMHAREFTVSAMHGDMEQKQREVLMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 337 NYDLPTNRENYIH 349


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 193/350 (55%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPL 76
           GY   +++Q A +   +  KD++  A TGSGKT A+ + +   L+     + PA  SA  
Sbjct: 217 GYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLI-----YKPAAVSATR 271

Query: 77  ALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            + + PTRELA+QV   G++L    A     +AV  GG+++ ++ + L++   IVV TPG
Sbjct: 272 VIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAV--GGLNLRQQEQQLKSRPDIVVATPG 329

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           RL DHIR     +I +L+ +V+DEAD ML+ GF+ ++  IL+  PK KR+ ++FSAT++ 
Sbjct: 330 RLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQTMLFSATMNT 389

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY---HGAKN 246
            I  L +      VR+ +    +  S +    V +   +  +   + ++LR         
Sbjct: 390 KIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHLLRLVDPQQQNR 449

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S +    R   VL     +V+ L G L+Q++R  +++  R     V I TD+AAR
Sbjct: 450 IVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAAR 509

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + ++ Q R+
Sbjct: 510 GLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRS 559


>gi|68074371|ref|XP_679100.1| snrnp protein [Plasmodium berghei strain ANKA]
 gi|56499760|emb|CAH95922.1| snrnp protein, putative [Plasmodium berghei]
          Length = 782

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 28/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  L
Sbjct: 364 NLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL 423

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+ 
Sbjct: 424 PPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRR 483

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P      
Sbjct: 484 GVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLKS 543

Query: 180 --------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                               R   MFSAT+ P++  L++ Y +    ++I         I
Sbjct: 544 EDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSI 603

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +   +    +   +  +L  +     IVF + +       K +++  F+ +AL G   
Sbjct: 604 EQKLEFITEGKKKQKLQELLEIYEPP-IIVFVNQKKVADIIAKSISKMKFKAIALHGGKV 662

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 663 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 722

Query: 340 RKGMSV-FVIPQN 351
            KG+++ FV  Q+
Sbjct: 723 MKGLAISFVTEQD 735


>gi|327276052|ref|XP_003222785.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX55-like [Anolis carolinensis]
          Length = 597

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/355 (33%), Positives = 191/355 (53%), Gaps = 22/355 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E G+ ++T VQ A +   +  KDV   A TGSGKT+AF + +   LL   ++     
Sbjct: 23  ALREMGFPHMTPVQSATIPLFMANKDVAAEAVTGSGKTLAFVIPIIEILLRREEKLKKKQ 82

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRE-RRDLQNGAHIVVG 130
              A+ I PTRELA+Q+  E+   + K     + C  IGG +   +  R  ++G +I+V 
Sbjct: 83  VG-AIVITPTRELAIQID-EVISHFTKHFPQFSQCLFIGGNNPMEDVERFKEHGGNILVA 140

Query: 131 TPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   +  ILD  PK+RR  +
Sbjct: 141 TPGRLEDMFRRKSEGLDLASSVRSLDILVLDEADRLLDMGFEASLNTILDILPKQRRTGL 200

Query: 185 FSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYR--AVLVALSDRDNAIVN 237
           FSAT +  +  L +   ++ VR+++     A+ N Q +    +   ++    ++ N +V+
Sbjct: 201 FSATQTQEVENLVRAGLRNPVRISVKEKDMAASNTQKTPTRLQNFYMICKADEKFNQLVH 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
            LR H  +  +VF ST A V  + K L   +   Q++ + G++ + +R+      R   +
Sbjct: 261 FLRQHKPEKHLVFFSTCACVEYYGKALESLIRNVQIMCIHGKM-KHKRNKIFMEFRKLSS 319

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF++P
Sbjct: 320 GILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHLGSALVFLLP 374


>gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 165/330 (50%), Gaps = 4/330 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GYV  T +Q   +   L  KDVL  AQTG+GKT AF L L   ++   D  S       L
Sbjct: 20  GYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLLQRMI--TDGISVRGPVRVL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+      L  +TG+  A   GGV    + +  +  A ++V  PGRL D 
Sbjct: 78  VLAPTRELALQIHETFISLGKQTGIRSAAVFGGVGETPQVKAARQ-ASVLVACPGRLLDL 136

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    +++SH+ A+VLDEAD M D+GF  D+  I+   P KR+ L+FSAT+ P I  +A 
Sbjct: 137 VNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQNLLFSATMPPEIRKIAD 196

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                   V + S       I +    V+   +   +   L        ++F  T+    
Sbjct: 197 QVLVQPAVVQV-SNTAPPEKIRHTLYPVSAGQKMGLLEAYLGRTPHDCVLIFTRTKHRAK 255

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              + L +      +L G LSQ  R  AL   R G+ R+ +ATD+AARGID   +  V++
Sbjct: 256 SLARKLEQKGMLATSLQGNLSQNRRQEALDGFRSGKYRIMVATDIAARGIDCVRISHVVN 315

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +L    E+  HR GRTGRA + G ++ ++
Sbjct: 316 FDLPDTAESYTHRIGRTGRADKSGEAITLV 345


>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
          Length = 470

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 175/338 (51%), Gaps = 14/338 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  K  + +A+TGSGKT+AF L +   L      +       AL + P 
Sbjct: 30  TPIQANCIPKILEGKTCIGAAKTGSGKTLAFALPIVQKL------YEDPYGIYALVLTPI 83

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  +   L     +   V +GG+ +  + R L    H+VV TPGRL DH+ G  
Sbjct: 84  RELAFQIADQFAILGKPMNMRTCVVVGGMDMVEQGRQLSKVPHVVVATPGRLVDHLEGCD 143

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
              +S +K +V+DEAD +L   F D I+ I    PK R+ + FSAT++  + TL K   +
Sbjct: 144 TFTLSRIKFLVIDEADRLLGGLFDDQIKRIFSVLPKTRQSIYFSATMTDTLQTLKKLVAE 203

Query: 203 DAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCSTRAS 256
           DA        SE    + +  + +L     +D  +V +LR   ++N     ++F +T  +
Sbjct: 204 DAFFYEDIGPSEAVTVAGLTQQYMLCPAYVKDAYLVELLRIFISENDQGTVMIFTNTCKN 263

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
               +  L E     VAL   + Q +R  AL   +  R ++ IATDVA+RG+D+P+++L+
Sbjct: 264 CQLLSITLNEVGMDNVALHAMIPQAQRLAALNRFKSNRVKILIATDVASRGLDIPNVQLI 323

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           I+  +   P+  +HR GRT RAGR+G +V  V P +++
Sbjct: 324 INHNVPRIPKEYVHRVGRTARAGRQGRAVTLVTPYDLK 361


>gi|126309196|ref|XP_001369799.1| PREDICTED: similar to eukaryotic initiation factor 4AI [Monodelphis
           domestica]
          Length = 460

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 92  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 151

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 152 ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 205

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 206 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSGNTQVVL 265

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 266 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 325

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 326 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 385

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 386 LARGIDVQQVSLVINYDLPTNRENYIH 412


>gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 403

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 178/338 (52%), Gaps = 8/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L +   L+      +
Sbjct: 12  IVKAVTELGYQTPTPIQEQAIPVILAGKNLIAAAQTGTGKTASFVLPILQNLID-----A 66

Query: 71  PASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           PA        L + PTRELAVQV   +        +      GGV    +++ L  G  I
Sbjct: 67  PAVRAKRIRVLILTPTRELAVQVENNIAQYGKYLPLKSMAMYGGVDSEPQKQQLIEGVDI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D    + ++   L+ +V+DEAD MLD+GF  DI  I++  P +R+ L+FSA
Sbjct: 127 LVATPGRLLDMYTRRAIHFDELEVLVIDEADRMLDMGFLPDINKIVERLPLQRQNLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  LAK    DAV + I+ + R    I+   + V   ++   + +++  +  + A
Sbjct: 187 TLSDQVRFLAKTAITDAVEIAISPDYRTAPQIEQCLISVDKDNKSALLSHLIIENQWQQA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+   ++    L +   +  A+    SQ  R+  L   + G+    +AT +AARG
Sbjct: 247 LIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFLVATGIAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  L  V++ +L    ++ +HR GRTGRAG  G ++
Sbjct: 307 IDIDSLARVVNYDLPDEADDYVHRIGRTGRAGVSGEAI 344


>gi|149237833|ref|XP_001524793.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152112298|sp|A5E2I8|SPB4_LODEL RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|146451390|gb|EDK45646.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 637

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/383 (31%), Positives = 197/383 (51%), Gaps = 40/383 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLLAEND 67
           + +A+    Y  +T VQ + +      KDV+V A TGSGKT+AF + +    S  L +  
Sbjct: 21  LKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVP 80

Query: 68  RFSPASAP------LALAIAPTRELAVQV----GRELEWLYAKTG----VVVAVCIGGVS 113
                  P      LA+ +APTRELA Q+     + LE L  +      +   + +G + 
Sbjct: 81  EGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLG 140

Query: 114 VHRERRD--LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             RE  D   +N   I++ TPGRL D +  + +  S L+ V+LDEAD++LD+ F  D+  
Sbjct: 141 NVREDLDSYQENRPQILIATPGRLLDFMSLQIVKTSSLEIVILDEADKLLDMSFETDVIK 200

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS------ENRQHSDIDYRAVL 225
           IL   PK+RR  +FSATIS A  T+ +    + V++ + +      +N   + +    ++
Sbjct: 201 ILKMLPKQRRTGLFSATISAAGDTIFRTGMNNPVKLQVKTKNFLGEQNNAPTSLQLSYMM 260

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE-----------HLFQVVAL 274
           +    +   ++ +LR +  K AIV+  T  SV  F ++L++                 +L
Sbjct: 261 IEPEHKLTTMLQMLRDNQFKKAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISALLFFSL 320

Query: 275 SGELSQQERSNALQMMRDG----RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            G+L+ + R N L+   +G    +  + +ATDVAARGID+PD++LVI  +  ++P   LH
Sbjct: 321 HGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDPPTDPSVFLH 380

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQ 353
           R GRTGRA + G ++ ++  + Q
Sbjct: 381 RCGRTGRANKVGRAIVMLNNDTQ 403


>gi|134111599|ref|XP_775335.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257994|gb|EAL20688.1| hypothetical protein CNBE0530 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 605

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 177/345 (51%), Gaps = 27/345 (7%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLA-------LASTLLAENDRFSPASAPLALAIAPTRELA 87
           L +KDV+  A+TGSGKT+AFG+        L     ++  R         L +APTRELA
Sbjct: 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNI 146
            Q    L     + G+      GGV    + R+L Q    +VVGTPGR  D      L++
Sbjct: 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLADSGELDL 327

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQKD 203
           S +  +VLDEAD MLD GF +DI  I+  +P   + R+ +MFSAT   ++  LA  +  +
Sbjct: 328 SSVSYLVLDEADRMLDAGFENDIRRIIAHTPGHKEGRQTVMFSATWPESVRRLASTFLNN 387

Query: 204 AVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILRYH---------GAKNAIVF 250
            +R+ + S+    N++   I    VL    D+D  + + L+ H              +VF
Sbjct: 388 PLRITVGSDELSANKRIEQI--VEVLDNPRDKDFRLTHHLKAHLKVHPNSKTSPTRILVF 445

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +    R    +    + V AL G+++Q+ R  AL+  + G+  V +ATDVAARG+D+
Sbjct: 446 ALYKKEAQRLEYTIRRAGYAVGALHGDMTQEARFKALEAFKTGQQNVLVATDVAARGLDI 505

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           PD+ LVI+       E+ +HR GRTGRAG+ G +V F   +N ++
Sbjct: 506 PDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGENHEK 550


>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Pichia pastoris CBS 7435]
          Length = 761

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 198/362 (54%), Gaps = 20/362 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS  GY   + +Q A +   L  KD++  AQTGSGKT A+ + +   LL     F P+
Sbjct: 260 KGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYMIPIIERLL-----FKPS 314

Query: 73  --SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             SA   + + PTRELA+QV   G+++       G+   + +GG+++ ++ ++L+    I
Sbjct: 315 KISATRVVVLTPTRELAIQVNDVGKKISQFV--NGIEFGLAVGGLNLRKQEQELRKRPDI 372

Query: 128 VVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           V+ TPGR  DHIR     ++  ++ +V+DEAD ML+ GF+++++ IL   P K++ ++FS
Sbjct: 373 VIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLLPGKKQTMLFS 432

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILRYHGA 244
           AT++ +I  L +      VR+ I    +  S +  ++  +   L  +   + +IL     
Sbjct: 433 ATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEMKPALLFDILTKVNP 492

Query: 245 KNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF + +    +   +L     +V  L G L+Q++R  ++   ++    + I T
Sbjct: 493 SQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDFKNLTVPILICT 552

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+P +E+VI+ ++    +  LHR GRT RAGR+G S+  + ++ Q RA  + R
Sbjct: 553 DLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSESNQDRA--IVR 610

Query: 362 EA 363
           EA
Sbjct: 611 EA 612


>gi|224539395|ref|ZP_03679934.1| hypothetical protein BACCELL_04300 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518969|gb|EEF88074.1| hypothetical protein BACCELL_04300 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 447

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 183/369 (49%), Gaps = 28/369 (7%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
            LT +QEA        KD+++ + TGSGKT+AF L L  TL  +      A    A+ + 
Sbjct: 14  QLTPMQEATREAYRENKDLVLLSPTGSGKTLAFLLPLVQTLKTD------AQGVQAVVLV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH--IVVGTPGRLCD 137
           P+RELA+Q+    E ++   G       C GG     E R ++ G H  +++GTPGR+ D
Sbjct: 68  PSRELALQI----ETVFKSMGTPFKAMSCYGGRPAMEEHRTMK-GIHPSVIIGTPGRMND 122

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R +  + + +  +V+DE D+ L+ GF D++  ++   P  ++ ++ SAT +  I   A
Sbjct: 123 HLRKENFDAATVTTLVIDEFDKCLEFGFHDEMAEVIGQLPSLKKRILLSATDAEEIPQFA 182

Query: 198 KNYQKDA--------VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
               +D         V++N    +     +    V+    D+   + N+L   G  + +V
Sbjct: 183 GVGGEDQLSADGSRLVKLNFLDPDALAPRLKLHKVVSPEKDKLETLYNLLCVLGYHSTLV 242

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+ R SV R T  L    F      G + Q +R  AL   R+G   V I+TD+AARG+D
Sbjct: 243 FCNYRESVERVTGYLQAKKFPCDMFHGGMEQPDRERALYKFRNGSCAVLISTDLAARGLD 302

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV---- 365
           +P +E V+H  L  N E   HR+GRT R    G S ++I  N +R  E +  +  V    
Sbjct: 303 IPGIENVVHYHLPVNEEAYTHRNGRTARWEADGNS-YLILHNEERVPEYIPEDIEVFEFP 361

Query: 366 SVVWEPAPS 374
            V+ +PA S
Sbjct: 362 EVLPKPAKS 370


>gi|17552642|ref|NP_497743.1| hypothetical protein C46F11.4 [Caenorhabditis elegans]
 gi|3874996|emb|CAB03765.1| C. elegans protein C46F11.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 811

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 183/346 (52%), Gaps = 7/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+ L  A   + +   
Sbjct: 274 KLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAY-LWPAIVHIMDQPD 332

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQN-GAH 126
                 P+A+ + PTRELA+QV +E +  + K   +  +C  GG S   +  +LQN GA 
Sbjct: 333 LKAGEGPVAVIVVPTRELAIQVFQEAK-KFCKVYNINPICAYGGGSKWEQSNELQNEGAE 391

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR+ D ++    N      +V DEAD M D+GF   ++ I D     R+ LMFS
Sbjct: 392 MVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFS 451

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA++   D VR+        ++DI+ +  ++   D      I N++ +   
Sbjct: 452 ATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASL 511

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F + +       K L    F +V L G++ Q ER+  L   R  ++++ +ATDVA
Sbjct: 512 GKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVA 570

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ARG+D+ ++  VI+ +++ + +  +HR GRTGRAG KG +  ++ +
Sbjct: 571 ARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTE 616


>gi|320588377|gb|EFX00846.1| eukaryotic translation initiation factor [Grosmannia clavigera
           kw1407]
          Length = 396

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +      AL
Sbjct: 42  GFERPSAIQQRAIIPVIKNHDVIAQAQSGTGKTATFSISV----LQKID--TNVKQCQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVREDMKALQDGPQVVVGTPGRVQDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRFLKTDAMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|302791703|ref|XP_002977618.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
 gi|300154988|gb|EFJ21622.1| hypothetical protein SELMODRAFT_107027 [Selaginella moellendorffii]
          Length = 663

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 185/344 (53%), Gaps = 14/344 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L E+G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L  + + +     
Sbjct: 95  LREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSSSGKKGYGR 154

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L +APTRELA QV  + E      G+      GG     ++  ++ G  IVVGTPG
Sbjct: 155 APTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPG 214

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKRRMLMFSATI 189
           R+ D +    LN+  LK  VLDEADEML++GF + +E IL    D+S    + L+FSAT+
Sbjct: 215 RIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTS--SVQTLLFSATM 272

Query: 190 SPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKN 246
              +  +A  + K +   V++  + +  +  + + +L+  A S R   I ++++ +G+  
Sbjct: 273 PSWVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGG 332

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+   S     L  ++ +   L G++ Q +R + L   R  +  V +ATDVAA
Sbjct: 333 RVIVFTETKNDASELAGSLGTNVAR--PLHGDIPQAQREHTLAGFRSAKFLVLVATDVAA 390

Query: 306 RGIDLPDLELVI-HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ D++L+I   E   + E  +HRSGRTGRAG  G++V + 
Sbjct: 391 RGLDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMF 434


>gi|293349333|ref|XP_001060057.2| PREDICTED: rCG25924-like [Rattus norvegicus]
 gi|149019091|gb|EDL77732.1| rCG25924 [Rattus norvegicus]
          Length = 620

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 189/361 (52%), Gaps = 10/361 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+V+ E +   G+   T +Q       L+  D++  AQTG+GKT+++   +   + 
Sbjct: 221 FHSYPEVM-ENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSY--LMPGFIH 277

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            ++      + P  L + PTRELA+QV  E E      G + +VC+ GG     + +D+ 
Sbjct: 278 LDSQPLEQRNGPGMLVLTPTRELALQV--EAECSKYSYGDLKSVCVYGGGDRDGQIQDVS 335

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRR 181
            G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P  R+
Sbjct: 336 KGVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQ 394

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
            +M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I   L 
Sbjct: 395 TIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLE 454

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ I
Sbjct: 455 NMSPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILI 514

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R A  L
Sbjct: 515 ATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRIATEL 574

Query: 360 F 360
            
Sbjct: 575 I 575


>gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus
           leucogenys]
          Length = 410

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------IVN 237
            SAT+   +  + K + +D +R+ +  E      I  R   + +  R  A       + +
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGI--RQFYINVETRGGAPEWKLDTLCD 269

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV
Sbjct: 270 LYKTLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRV 329

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            I TD+ ARGID+  + LVI+ +L +N EN +H
Sbjct: 330 LITTDLLARGIDVQQVSLVINYDLPTNRENYIH 362


>gi|228993029|ref|ZP_04152952.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
 gi|228999079|ref|ZP_04158661.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228760696|gb|EEM09660.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228766677|gb|EEM15317.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 186/365 (50%), Gaps = 12/365 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL  
Sbjct: 10  NFQPFLIDAVRELRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPT 62

Query: 66  NDRFSPASAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRD 120
            +R       + L I APTRELA Q+ +E   L     +  ++ A C IGG    R    
Sbjct: 63  LNRIDAKREEVQLVITAPTRELAQQIYQEIVKLTKFCEEDQMITARCLIGGTDKQRSIEK 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+V+GTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I    PK  
Sbjct: 123 LKKQPHVVIGTPGRIKDLVEEKALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKNL 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   + N+L 
Sbjct: 183 QMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIELVKNMLL 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AIVF +T+         LAE   +V  + G+LS ++R   ++ +RD   +  +A
Sbjct: 243 QFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQYIVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L 
Sbjct: 303 TDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEALDSLE 362

Query: 361 REANV 365
           ++ N+
Sbjct: 363 KQRNI 367


>gi|217972233|ref|YP_002356984.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497368|gb|ACK45561.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 443

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/334 (34%), Positives = 182/334 (54%), Gaps = 9/334 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------RFSPASAPLA 77
           T VQ+  +   L  +D+L  AQTGSGKT+AFGL L   LL +        +  P S   A
Sbjct: 36  TKVQQLAIPASLAGRDLLALAQTGSGKTLAFGLPLLQQLLLQQQTQLQGAKSVPPSNAQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV   L+ + ++    + + +  GGV +  +  +L     ++V TPGRL
Sbjct: 96  LVLVPTRELALQVTEALQTVASQLSASLNIQLLCGGVPLEDQLAELAAKPQVLVATPGRL 155

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D  +   +++  +K +VLDEAD +L++GF  D++ ++   PK ++  +FSAT+  A+ T
Sbjct: 156 LDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQKLMAFMPKLKQTSLFSATLPEALDT 215

Query: 196 LA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           LA K    + +RV     N    +I+ +  LV    +  A++ +L+ +     +VF S R
Sbjct: 216 LAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISAR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  K LA+   +V AL GE  Q  RS  L   +  R +V +ATD+ ARGI +  L 
Sbjct: 276 DDADAVAKRLAKAGMKVAALHGEKDQAVRSQTLADFKANRIQVLVATDLMARGIHVDALP 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 336 VVINLDLPMSAPVYVHRIGRTARAGEKGLAISLV 369


>gi|33151461|ref|NP_872814.1| ATP-dependent RNA helicase SrmB [Haemophilus ducreyi 35000HP]
 gi|33147681|gb|AAP95203.1| ATP-dependent RNA helicase protein [Haemophilus ducreyi 35000HP]
          Length = 442

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 176/334 (52%), Gaps = 8/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   TSVQ   +   L  +D+L SA TG+GKT AF L     LL +  R  P  AP  L
Sbjct: 27  GYTRPTSVQAETIPYALAGRDLLGSAPTGTGKTAAFLLPAIQHLL-DYPRRKPG-APRIL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  E +   A T + +A   GGV+         +   IVV TPGRL  +
Sbjct: 85  ILTPTRELAMQVAEEAQAFAAFTTLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQY 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLA 197
           I+ +  +   ++ ++LDEAD ML +GF  D+E I+  +  ++   +FSAT+    +T  +
Sbjct: 145 IKEENFDCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKYTWLFSATLEGELLTDFS 204

Query: 198 KNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +    D + +N     R+   I    Y A  V    +   +  I+     +  IVF   R
Sbjct: 205 ERILTDPLHINADPSRRERKKIQQWYYHADNV--EHKTKLLARIITTIEMEKVIVFVRRR 262

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   +  L +   +   L G+++Q +R+ A+  +++G   V +ATDVAARGID+ +++
Sbjct: 263 EDVRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKEGGVNVLVATDVAARGIDIDEVD 322

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            VI+ +L  + +  LHR GRT RAG+KG ++ ++
Sbjct: 323 YVINFDLPYSEDTYLHRIGRTARAGKKGSAISLV 356


>gi|289619555|emb|CBI53838.1| unnamed protein product [Sordaria macrospora]
          Length = 626

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 194/391 (49%), Gaps = 51/391 (13%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + + EN+ + I   +   GY N+T VQ   ++P L+ KD++  A+TG+GKT+ F + +  
Sbjct: 79  LGVHENVVRAITHGM---GYENMTEVQSMTISPALKGKDIVAQAKTGTGKTLGFLVPVIQ 135

Query: 61  TLLAEN----DRFSPASAP----LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            ++A++    DRF    A      A+ I+PTRELA Q+G E   L   TGV+V   +GG 
Sbjct: 136 KIVAQDPALADRFGGRRARSDDIRAIVISPTRELAEQIGEEARKLVKGTGVIVQTAVGGT 195

Query: 113 SVHRERRDL-----QNGAHIVVGTPGRLCDHI--RGKGLNISHLKAVVLDEADEMLDLGF 165
               ++R++     Q G HI+VGTPGRL D +     G++   L+ +VLDEAD ML++GF
Sbjct: 196 ----QKREMLYKTRQQGCHILVGTPGRLNDLLSDSTSGIDAPRLQTLVLDEADRMLEVGF 251

Query: 166 RDDIEFILDSSPKK----RRMLMFSATISPAITTLAKNY----QKDAVRVNIASENRQHS 217
            +++  I++  P +    R+ L+FSATI   +  LA++Y      + V+   A E   H 
Sbjct: 252 DEELRQIINYLPDRKVLPRQTLLFSATIPKDVVGLARSYIDKNNFEFVQTVKADEVLTHD 311

Query: 218 DIDYRAVLVALSDRDNAIVNILRY-HGAKN------------AIVFCSTRASVSRFTKVL 264
            I     +V     +N    +L     A N            AIVF  T A V     + 
Sbjct: 312 RIP--QYIVPCKGFENIYPTMLELVEKAINESRTNPDALPFKAIVFLPTTAEVIMANAIF 369

Query: 265 A------EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                   H+ +   +  +L+Q  R+ A    +     +  ++DV ARG+D P++  VI 
Sbjct: 370 RRLQWKFRHIPKTWDIHSKLTQNARTRAADEFKRATTGILFSSDVTARGMDFPNVSHVIQ 429

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
                N E  +HR GRTGRA + G    ++P
Sbjct: 430 LHTPPNREQYIHRLGRTGRANKSGQGWLIVP 460


>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 863

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 184/356 (51%), Gaps = 30/356 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +  TL   ++     
Sbjct: 36  KAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQTLKGHSE----V 91

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   +++ TP
Sbjct: 92  VGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTP 151

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FSAT+   
Sbjct: 152 GRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLLFSATLPSQ 211

Query: 193 ITTLAK-NYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--------- 241
           +T  ++   + D+   + +  E+     +D   +      +  A++++LR          
Sbjct: 212 LTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKLQSMGNANA 271

Query: 242 ----------HGAKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
                      G K A     IVF +TR +V  F  +L +       + G + Q +R+++
Sbjct: 272 DSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQTQRTSS 331

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG KG
Sbjct: 332 LSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGAKG 387


>gi|322690898|ref|YP_004220468.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320455754|dbj|BAJ66376.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 728

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 183/382 (47%), Gaps = 37/382 (9%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------------- 66
           +Q   L   L  +D+L   +TGSGKT+AF + L + L + +                   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVTRLGSYDSFGEIAMEEFRKEIKRRKK 111

Query: 67  --------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D F P   P  L +APTRELA Q+   L  L    G+      GGV    + 
Sbjct: 112 ASLEERRADDFLPH--PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SP 177
           RDL+ GA IVV  PGRL D +R + L +S ++ VV+DEADEM D+GF   ++ +L+  SP
Sbjct: 170 RDLKAGADIVVACPGRLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISP 229

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + ML FSAT+   +  +   +  D  +V+         D+    V        + +V 
Sbjct: 230 DAQHML-FSATLDHGVDEVVNTFLHDP-KVHEVDSATAEPDLMTHHVFETTRGDKHELVR 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L   G    I+F  T+    +  K L ++      L G L+Q +R   L     G  RV
Sbjct: 288 ML-ASGEGRRILFTRTKFQAKKLAKNLTQNGIPAAELHGNLNQNQRDRNLAAFDSGDVRV 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +ELV+  E  ++P++ +HRSGRT RAG+ G  V ++    +R   
Sbjct: 347 MVATDVAARGIDVGGVELVVQVEPPADPKSFVHRSGRTARAGKAGDVVTLVLPEQRRETR 406

Query: 358 RLFREANVSV----VWEPAPSV 375
           RL  +A +      V   +P V
Sbjct: 407 RLLNQAGIKTKMIEVTHDSPEV 428


>gi|317138177|ref|XP_001816731.2| ATP-dependent RNA helicase has1 [Aspergillus oryzae RIB40]
 gi|91206843|sp|Q2UUN6|HAS1_ASPOR RecName: Full=ATP-dependent RNA helicase has1
          Length = 596

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 193/357 (54%), Gaps = 11/357 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L A   RF P +   A+
Sbjct: 138 GFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEMLSAL--RFKPRNGTGAI 195

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +++V TPGRL DH
Sbjct: 196 IVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDH 255

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTL 196
           ++  +G    +L+ +++DEAD +L++GF D++  I    P + R+ ++FSAT +  +  L
Sbjct: 256 LQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSENRQTMLFSATQTTKVEDL 315

Query: 197 AK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           A+ + +   + +N+    ++HS ++      V+     R   + + L+ +  K  IVF S
Sbjct: 316 ARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVFLS 374

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +  SV  + ++L      V+ L G+  QQ+R+N      + +    I TDVAARG+D+P 
Sbjct: 375 SCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDIPA 434

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFREANVSVV 368
           ++ +I  +   +P + +HR GRT R    KG S+  + Q  +    +  +EA V VV
Sbjct: 435 VDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFL-QPSEVGFLKHLKEARVPVV 490


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 188/369 (50%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E +    +   T +Q       L   D++  A TGSGKT+++ L      +   
Sbjct: 97  FPANVMEVIKRLNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSY-LLPGIVHINHQ 155

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELA QV +++   Y +   +   CI GG     + RDL+ G 
Sbjct: 156 PFLQRGDGPILLVLAPTRELAQQV-QQVAAEYGRACRLRTTCIYGGAPKGPQIRDLERGV 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 215 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---Y 241
           SAT    +  LA+++ K+ V +NI + E   + +I     +    ++D+ +V ++     
Sbjct: 275 SATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 334

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 335 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 394

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++  +   
Sbjct: 395 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLVS 454

Query: 359 LFREANVSV 367
           + REAN ++
Sbjct: 455 VLREANQAI 463


>gi|212716188|ref|ZP_03324316.1| hypothetical protein BIFCAT_01104 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661555|gb|EEB22130.1| hypothetical protein BIFCAT_01104 [Bifidobacterium catenulatum DSM
           16992]
          Length = 690

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 176/367 (47%), Gaps = 27/367 (7%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA--------------STLLAENDRFSP 71
           +Q   L   L  +D+L   +TGSGKT+AF + L               S    E DR   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVARLGEVDANEYENMSQFRHEVDRVKQ 111

Query: 72  ASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           A A           P  L +APTRELA Q+   L  L    G+      GGV   R+ RD
Sbjct: 112 AHAKERRADDFVPHPRGLVLAPTRELANQINDVLMPLAQIYGINTTTVYGGVRYARQIRD 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA IVV  PGRL D I    L +  ++  V+DEADEM D+GF   ++ +L       
Sbjct: 172 LQAGADIVVACPGRLEDLIEQGALTLDKVEVAVIDEADEMADMGFLPPVKRLLGQISFDA 231

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSAT+   +  + + +  D    ++ S      ++ +        +R   +  +  
Sbjct: 232 QIMLFSATLDHGVDEVVETFLSDPKVHSVDSATATVDEMTHHVFKTTQGNRHELVRTLAS 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  I+F  T+    +  K L ++      L G LSQ +R   L     G   V +A
Sbjct: 292 GKGRR--ILFTRTKFQTQKLAKDLTQNGIPAAELHGNLSQNQRDRNLAAFNSGDVNVMVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +ELV+  E   +P++ LHRSGRT RAG  G  V +I  N +RR  R+ 
Sbjct: 350 TDVAARGIDVSGVELVVQVEPPEDPKSFLHRSGRTARAGHSGDVVTIILPNQRRRTRRMM 409

Query: 361 REANVSV 367
           REA ++V
Sbjct: 410 REAGLTV 416


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/351 (32%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P  +G+ + + GY   T VQ+  +      +D++  AQTGSGKT AF L + S +    
Sbjct: 99  LPDTVGQNVLKSGYEKPTPVQKYSIPIVNNNRDLMACAQTGSGKTAAFLLPVLSGMFRNG 158

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   D FS +  P A+ + PTREL  Q+  E       T +   V  GG SV  +  +L 
Sbjct: 159 LKSADSFSESQTPQAIVVGPTRELVNQIYIEARKFARGTMIQPVVVYGGTSVRSQLANLS 218

Query: 123 NGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKK 179
            G ++++ TPGRL D I RGK ++   ++ ++LDEAD MLD+GF  +I  +L +   P K
Sbjct: 219 RGCNMLIATPGRLLDFIDRGK-VSCECVEYIILDEADRMLDMGFEPEIRRLLGAPGMPDK 277

Query: 180 --RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             R  LMFSAT    I  LA  + + D + + +       SD+    + +  S++ + ++
Sbjct: 278 NTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQIDHSEKRDKLM 337

Query: 237 NILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +L       A  +VF  T+ +      + ++      ++ G+  Q+ER  AL   ++G 
Sbjct: 338 ELLSDVPTTKARTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREMALVDFKNGT 397

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G + 
Sbjct: 398 CPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGTAT 448


>gi|148540060|ref|NP_001038443.2| probable ATP-dependent RNA helicase DDX59 [Danio rerio]
 gi|141795432|gb|AAI34851.1| LOC562123 protein [Danio rerio]
          Length = 584

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 190/362 (52%), Gaps = 16/362 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ + L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L +++
Sbjct: 178 PTVLEKNLKVAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSE 236

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SP S P  L + PTRELA+Q+  +  E +     +  A+ +GG+ +  +   L++   
Sbjct: 237 SASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIK 295

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ S
Sbjct: 296 IVIGTPGRLLEILKQKAIQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTS 355

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YH 242
           ATI      LA+    D V + I  +N+  +++    + V    +   +  IL     Y 
Sbjct: 356 ATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLYQ 415

Query: 243 GAKNAIVFCSTRASV--SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 V C   A +      KV++      VA+  +  Q ER+  ++ + +G+  V I+
Sbjct: 416 PPVVVFVDCKLGADLLCEAVQKVMS---LNTVAIHSDKMQWERNKIVKGLLEGQFDVVIS 472

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++      M    +RLF
Sbjct: 473 TGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITF----MNNNNKRLF 528

Query: 361 RE 362
            E
Sbjct: 529 LE 530


>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
          Length = 414

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 181/357 (50%), Gaps = 12/357 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  A   L +  R    
Sbjct: 16  EAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIP-ALQFLQDFPRKKAG 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            A + L + PTRELA+Q+  +   L   T + +    GGV        L     IVV TP
Sbjct: 75  PARI-LILTPTRELAMQITEQARELAKYTKLNIFTITGGVQYQEHADILATTQDIVVATP 133

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP- 191
           GRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ ++FSAT+   
Sbjct: 134 GRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQTMLFSATLEGR 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAI 248
            +     +  K+   VN     R+   I   +     +D  N  + +L+      ++ AI
Sbjct: 194 GVEGFTADLLKEPAEVNAEPPRRERKKI---SQWYHRADDMNHKLELLKAILTQQSERAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  ++    VL         + GE+ Q  R+NA+   RDG   + +ATDVAARGI
Sbjct: 251 VFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFRDGSVNILLATDVAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           D+PD+  VI+ +L  + +  LHR GRT RAG+KG+++ ++    Q M  R  R  +E
Sbjct: 311 DVPDVSHVINFDLPRSADVYLHRIGRTARAGKKGIAISLVEAHDQPMMDRVARYLKE 367


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 17/365 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ E    S  +      
Sbjct: 151 YERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPILNRMIEEGPGDSLIATMETNR 210

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL +APTRELA Q+  +      ++ +   V  GG  +  +  ++  G +++V 
Sbjct: 211 RKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLYGGADMRAQLIEVSKGCNLLVA 270

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFS 186
           TPGRL D I    + + H + ++LDEAD MLD+GF   I  I+  D+ P   KR+ LMFS
Sbjct: 271 TPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQIRRIVEQDNLPPSGKRQTLMFS 330

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LAK++    + + +        +I      V    + +A+V++L       
Sbjct: 331 ATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSISWVEEDKKRDALVDLLSSSDPGV 390

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L    F V ++ G+ +Q +R  AL   R+GR  + +AT VAA
Sbjct: 391 LTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRELALPCFRNGRTPILVATAVAA 450

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++        +N+ R    L  E
Sbjct: 451 RGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIATSFFNDKNRNLARGLVELLEE 510

Query: 363 ANVSV 367
            N +V
Sbjct: 511 VNQNV 515


>gi|189205174|ref|XP_001938922.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187986021|gb|EDU51509.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 573

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 184/382 (48%), Gaps = 29/382 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 136 FPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPAIVHINAQ- 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 195 PLLAPGDGPIVLILAPTRELAVQIQQEIS-KFGKSSRIRNTCVYGGVPKGPQIRDLARGV 253

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 254 EVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMW 313

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA +YQKD ++VNI S +    H       V      RD    ++     
Sbjct: 314 SATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAKHLETIMS 373

Query: 244 AKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K+   ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 374 DKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 433

Query: 302 DVAARGI----------------------DLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           DVA+RGI                      D+ ++  V + +  +N E+ +HR GRTGRAG
Sbjct: 434 DVASRGIASRDPIMIAVCSFHQSLTFALQDVRNITHVFNYDYPNNSEDYVHRIGRTGRAG 493

Query: 340 RKGMSVFVIPQNMQRRAERLFR 361
             G ++ +      ++A  L +
Sbjct: 494 ANGTAITLFTTENSKQARDLVQ 515


>gi|302787567|ref|XP_002975553.1| hypothetical protein SELMODRAFT_103968 [Selaginella moellendorffii]
 gi|300156554|gb|EFJ23182.1| hypothetical protein SELMODRAFT_103968 [Selaginella moellendorffii]
          Length = 542

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 183/347 (52%), Gaps = 15/347 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ +LT VQE I+    R +D LV A TGSGKT+AF + +   L   +  F P     A+
Sbjct: 20  GFYDLTPVQERIIPQLCRGQDALVCAVTGSGKTLAFVVPIVEILRKHSASFHPGQVG-AI 78

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG--AHIVVGTPGRL 135
            +APTRELA Q+       +A       V  +GG  V  +   ++N   A ++VGTPGRL
Sbjct: 79  VVAPTRELASQIFDVSRPFFAGLNEFDPVLLVGGADVSLDVSSIENCPRAKVLVGTPGRL 138

Query: 136 CDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
            D ++     L+ S LK ++LDEAD +L++G    +  I+   P +R   +FSAT +  +
Sbjct: 139 LDIMQRCSSHLDFSSLKVLILDEADRLLEMGHDRRVSEIISLLPGQRITGLFSATETKEL 198

Query: 194 TTLA---KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIV 249
              A   + Y     +   ++ + Q ++ D+   L++ +D + + +   L  H +K  IV
Sbjct: 199 AVKAGVRQEYSFQTKKQTPSTLSVQSTNSDFSQYLISDADEKSSQLAQFLLEHKSKKTIV 258

Query: 250 FCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +  T ASV  +  +L +        +V L G++ Q+ R NALQ   D  + V   TDVAA
Sbjct: 259 YFMTCASVDYWGTILQKVDIMKNVSIVVLHGKMKQKSRENALQRFTDMPSGVLFCTDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           RG+D+P ++ ++  +   +P   +HR GRT R GR G S VF++P+ 
Sbjct: 319 RGLDIPGVDWIVQYDPPQDPNTFVHRVGRTARIGRVGHSVVFLLPKE 365


>gi|333030261|ref|ZP_08458322.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740858|gb|EGJ71340.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 442

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 183/344 (53%), Gaps = 17/344 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I +A+ E G   LT +Q+  +N  + ++D++V + TGSGKT+A  L      L EN   
Sbjct: 5   IIKQAMQELGIDELTPLQQKTINLAIDKRDLIVLSPTGSGKTLA-YLLPLLLNLKEN--- 60

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIV 128
            P      L + P+RELA QV R    L  K+G       GG S+  E+  L  G+ H++
Sbjct: 61  KPKKIS-TLILVPSRELAQQVNRVFSSL--KSGFNSVCAYGGHSIQEEKNSLLTGSPHVL 117

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+    +++S ++ +++DE D+ L+LGF +D+  I+   P  +R  + SAT
Sbjct: 118 VGTPGRILDHMNRGNVDVSDIELLIIDEFDKSLELGFHEDMAEIIHLLPALKRRFLLSAT 177

Query: 189 IS---PAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            +   P  T + +       R++   E  +  S I    V     D+   ++ +L   GA
Sbjct: 178 DAKEIPQFTGVGR-----VARLDFLDEKDELASRIQLMQVHSPGKDKLETLLKLLCTIGA 232

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +++IVFC+ R SV R  + L ++    V   G L Q  R + L    +G A   IATD+A
Sbjct: 233 ESSIVFCNHRESVDRIHQYLEKNKIASVPFHGGLEQDMRESGLFKFSNGSAYTLIATDLA 292

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+P++E VIH  L  N E   HR+GRT R   +G S  ++
Sbjct: 293 ARGLDIPEVEHVIHYHLPLNEEAFTHRNGRTARWQAEGTSYVIL 336


>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 795

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 175/336 (52%), Gaps = 9/336 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +D++  A+TGSGKT AF   L   ++ + D   P   P+ L 
Sbjct: 277 YSTPTPIQAQGVPIAMSGRDIIGIAKTGSGKTAAFIWPLLIHIMDQKD-IKPGDGPIGLI 335

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            APTREL+ Q+ +E +  + K   +  VC  GG ++  + +  Q G  I+V TPGRL D 
Sbjct: 336 CAPTRELSQQIHQECK-KFGKAYNIHTVCAYGGGNMWEQTKACQAGCEILVATPGRLIDL 394

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FSAT    +  LA+
Sbjct: 395 VKRKATNLERVTFLVLDEADRMFDMGFEPQVRSIANHVRPDRQTLLFSATFRKKVERLAR 454

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNAIVFCSTR 254
           +   D +RV        + D+    ++  LSD        I  ++ +    + ++F + +
Sbjct: 455 DILTDPIRVIQGDLGEANEDV--VQIVECLSDGPAKWPWLIKRLVSFTTEGSVLIFVTKK 512

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           A+       L  H F +  L G++ Q ER+  +   +  +  + +ATDVAARG+D+P ++
Sbjct: 513 ANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPILVATDVAARGLDIPSIK 572

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            V++ +++ + +   HR GRTGRAG KG +  ++ Q
Sbjct: 573 TVVNYDVARDIDTHTHRIGRTGRAGIKGTAYTLVTQ 608


>gi|325271804|ref|ZP_08138271.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324103051|gb|EGC00431.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 396

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 159/302 (52%), Gaps = 1/302 (0%)

Query: 47  GSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
           G+GKT  F L +   L  E ++ +  S   AL + PTRELA QV   +        +   
Sbjct: 1   GTGKTAGFALPVLQRLALEGEKVASNSI-RALVLVPTRELAEQVHNNVREYAENLPLSTY 59

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
              GGVS++ +   L+ G  ++V TPGRL D  R   +  + ++ +VLDEAD MLDLGF 
Sbjct: 60  AVYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFA 119

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           ++++ +  + P+KR+ L+FSAT S  I  LA     D + + ++  N   + +    V V
Sbjct: 120 EELQSVYAALPRKRQTLLFSATFSEQIRLLAGLALSDPLSIEVSPRNAAAASVKQWLVPV 179

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +++   +++R    K  +VF  TR  V +    L         + G+  Q  R  A
Sbjct: 180 DKKRKEDLFCHLMRKQRWKQVLVFAKTRNGVDQLVARLLAEGVNADGIHGDRPQATRQRA 239

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   +    +V +ATDVAARG+D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ 
Sbjct: 240 LDSFKAREIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAIS 299

Query: 347 VI 348
           ++
Sbjct: 300 LV 301


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 176/329 (53%), Gaps = 9/329 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPASAPLA 77
           G+   +++Q   +   ++ +DV+  AQ+G+GKT    +A++S  L + N R +       
Sbjct: 21  GFEKPSAIQARTIKQIVKGRDVIAQAQSGTGKTSL--IAISSLQLTDINLRETQV----- 73

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q  + +  L     V    CIGG S+ ++ + L  G HIV GTPGR+ D
Sbjct: 74  LILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQHIVSGTPGRVFD 133

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            ++ + L    +  +VLDEADEMLD GF++ I  I    P   ++++ SAT+   I  + 
Sbjct: 134 MMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILISATLPHDILEMT 193

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             +  + +R+ +  +      I    V V   + + + + +I         ++FC+T+  
Sbjct: 194 SKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDIYDTVTVTQVVIFCNTKRK 253

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  + E+ F V ++ G++ Q ER    +  R    RV I TDV ARGID+  + LV
Sbjct: 254 VEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFRALETRVLITTDVWARGIDVQHVSLV 313

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ +L +N E  +HR GR+GR GRKG+++
Sbjct: 314 INYDLPNNRELYIHRIGRSGRYGRKGVAI 342


>gi|115434688|ref|NP_001042102.1| Os01g0164500 [Oryza sativa Japonica Group]
 gi|143361417|sp|Q761Z9|RH18_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 18; AltName:
           Full=BRI1-KD-interacting protein 115; Short=BIP115
 gi|15528747|dbj|BAB64789.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|21327991|dbj|BAC00580.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113531633|dbj|BAF04016.1| Os01g0164500 [Oryza sativa Japonica Group]
 gi|125569150|gb|EAZ10665.1| hypothetical protein OsJ_00495 [Oryza sativa Japonica Group]
 gi|215697070|dbj|BAG91064.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737306|dbj|BAG96235.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 647

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 195/367 (53%), Gaps = 25/367 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+ +AL   G+   T VQ A +   L  KDV V A TGSGKT+AF + +   L     
Sbjct: 32  PEVV-KALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPS 90

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN-GA 125
              P    L + I+PTREL+ Q+    +  +A   GV   + +GG  +  E + L+  GA
Sbjct: 91  PPKPHEV-LGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGA 149

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+VGTPG+L D + R   LN  +L+ ++LDEAD +LDLGF+  I  I+   PK RR  +
Sbjct: 150 NILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE---------------NRQHSDIDYRAVLVALS 229
           FSAT + A+  LAK   ++ VRV + +E               ++    +    ++   S
Sbjct: 210 FSATQTEAVKELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLEYMICEAS 269

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA--EHL--FQVVALSGELSQQERSN 285
           ++ + +V+ L  +  K  +V+ +T A V  +  VL   + L    ++   G++ Q  R  
Sbjct: 270 NKSSQLVDFLVQNNGKKIMVYFATCACVDYWAIVLPLLDSLKGSPIIPYHGKMKQGPREK 329

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS- 344
           AL       + + + TDVAARG+D+P ++L++  +   +P   +HR+GRT R  ++G + 
Sbjct: 330 ALASFSALSSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAI 389

Query: 345 VFVIPQN 351
           VF++P+ 
Sbjct: 390 VFLLPKE 396


>gi|254580331|ref|XP_002496151.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
 gi|238939042|emb|CAR27218.1| ZYRO0C11660p [Zygosaccharomyces rouxii]
          Length = 435

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 189/351 (53%), Gaps = 19/351 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L+       T++Q A +   L+ +D +  A+TGSGKT+AFG  +  T  +E+      
Sbjct: 20  ETLNAMKISQPTTIQSACIPEILKGRDCIGGAKTGSGKTIAFGAPML-TKWSED-----P 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                + + PTRELA+Q+  +   L +   + V++ +GG  + ++  +LQ   H ++ TP
Sbjct: 74  CGMFGVVLTPTRELAMQIAEQFTALGSNMNIRVSIIVGGEDIVKQGLELQRKPHFIIATP 133

Query: 133 GRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFS 186
           GRL  HI   G +    +   K +VLDEAD +L   F  D+   + + P   KR+ L+F+
Sbjct: 134 GRLAHHILNSGDDTVGGLIRTKFLVLDEADSLLTGTFAKDLAICIGALPPKNKRQTLLFT 193

Query: 187 ATISPAITTL--AKNYQKDAV-RVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241
           AT++  +  L  A +  K  +    +AS ++    S +    +LV    ++  +  +L  
Sbjct: 194 ATVTDQVRALENAPSEGKPPLFTYEVASMDKVAIPSSLKTEYILVPEYVKEAYLYQLLTC 253

Query: 242 HGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              K+  A+VF +   +     + L     +V +L  ++ QQER+N+L   R   ARV I
Sbjct: 254 EDYKDSTAMVFVNRTMAAEILRRTLYAMGVRVTSLHSQMPQQERTNSLHRFRANAARVLI 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ATDVA+RG+D+P ++LV++ ++ S+P+  +HRSGRT RAGR+G ++  I Q
Sbjct: 314 ATDVASRGLDIPTVQLVVNYDIPSDPDVFIHRSGRTARAGRRGDAISFITQ 364


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 183/344 (53%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     L+
Sbjct: 6   FQLDPSLL-ESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R+S  +  L L   PTRELA Q+ R    L    G+ +A+  GGV    +   L+ 
Sbjct: 65  DFPRRYSGQARVLILT--PTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRY 241
           +FSAT+    +   A+    D + +++ +  ++ + I     L    D   A++ ++L+ 
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +AT
Sbjct: 243 EDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 303 DVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|254583636|ref|XP_002497386.1| ZYRO0F04312p [Zygosaccharomyces rouxii]
 gi|238940279|emb|CAR28453.1| ZYRO0F04312p [Zygosaccharomyces rouxii]
          Length = 602

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 199/410 (48%), Gaps = 37/410 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+   G+  +T VQ + +    R KDV+V + TGSGKTVAF + +   ++AE     
Sbjct: 18  IKAAIDVMGFDTMTPVQTSTIPMFARNKDVVVESVTGSGKTVAFVIPILEKIIAEE---- 73

Query: 71  PASAP-------LALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERR 119
            A+ P        +L + PTREL+ Q+       LE        + +  + G +    R 
Sbjct: 74  -ANTPNLKKGHFHSLIVTPTRELSNQIQSVIQSFLEHYPDDEHPIRSQLLVGTNQSSVRD 132

Query: 120 DL----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           DL    QN   I+VGTPGR+ D ++   +       +VLDEAD +LDL F  DIE IL +
Sbjct: 133 DLANFLQNRPQILVGTPGRVLDFLQMSAVQTKSCSVLVLDEADRLLDLSFFGDIEKILKT 192

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK+RR  +FSATI  A + + K   ++ V++ ++S+ +  + +     ++    +   +
Sbjct: 193 LPKQRRTGLFSATIGSAGSQIFKTGLRNPVKITVSSKTKAPTSLGLFYTVIEPEAKIQQL 252

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFT---------KVLAEHLFQVVALSGELSQQERSNA 286
           ++I+  +  K  IV+  T  SV+ F          K L +   +  +L G+L    R   
Sbjct: 253 LSIMNNYKFKKCIVYFPTCISVTYFYSFMQYLQRDKKLLDEEVEFFSLHGKLQTSSRQKT 312

Query: 287 LQMMRD--GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           L       G+A V   TDVAARGID+PD++LVI  +  S+    LHR GRTGRA ++G +
Sbjct: 313 LDSFGKSFGKA-VLFTTDVAARGIDIPDVDLVIQLDPPSDTTMFLHRCGRTGRANKEGRA 371

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEP-----APSVEAIRERDAQRILQD 389
           +  + +  +          NV +   P      P+ E   E     +LQD
Sbjct: 372 ITFLNKGREEDYIPFLEVKNVELKEMPLKIIDLPTKEPFYEIFKNWVLQD 421


>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3894-4]
          Length = 397

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLFGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 204/418 (48%), Gaps = 45/418 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ   + +  +G+   TS+Q   +   +  +DV+  A+TGSGKTVAF L +   +  + 
Sbjct: 410 LPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR 469

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S +  P+A+ ++PTRELA Q+ +E +       +  + C+GG S+  +   ++ GA 
Sbjct: 470 P-VSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAE 528

Query: 127 IVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +V+ TPGR+ D +    G+  N+     +V+DEAD M D+GF   +  I+++     + +
Sbjct: 529 VVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKV 588

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    + +LA+      + + +   +    +ID R   V + D D     +L   G
Sbjct: 589 LFSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQR---VEVRDGDTKFTRLLEILG 645

Query: 244 AKN----------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                         ++F   + S     + L +  +   +L G   Q +R  A++  ++G
Sbjct: 646 EMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNG 705

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
              + +AT VAARG+D+ +L+LVI+ +  ++ E+ +HR+GRTGRAG KG  + F+ P+  
Sbjct: 706 DVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQ- 764

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               ER               SV+ +R  +A +          I  D KKM D  L K
Sbjct: 765 ----ERF--------------SVDIVRALEASKAF--------IPDDLKKMSDSFLGK 796


>gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
          Length = 563

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 182/344 (52%), Gaps = 12/344 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E  +  G V  + VQ   +   L  KD +  ++TG+GKT+AF + +   L    D +   
Sbjct: 118 EQCAVMGIVEPSPVQLNCIPEILIGKDAIGCSKTGTGKTLAFAIPIIQRL--SEDPY--- 172

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + P+RELA Q+G + + L    G+  ++ +GG  +  +  ++ N  HI++ TP
Sbjct: 173 -GIYALVLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPHILIATP 231

Query: 133 GRLCDHIRGKG-LNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           GRL DHI  +   N  H +K  VLDEAD +LD  +   +E I++  PK+R+ L+FSATI+
Sbjct: 232 GRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEKLPKERQTLLFSATIT 291

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---- 246
            A+  L +   K        S       ++ R VL   S +D  +  +++    KN    
Sbjct: 292 DALCRLQELSVKKPFFWQEQSCTVTVDTLEQRYVLCPKSVKDAYVTYVVKLFTDKNPQSS 351

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  +       T + A+  F+V AL   +SQ+ER ++  + +  + ++ I TDVA+R
Sbjct: 352 VLIFSHSCYECQALTLMFADLGFKVGALHSMISQRERLSSFNLFKSNQLKILICTDVASR 411

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+DLP ++LVI+  + +  +  +HR GR+ RAGR G +V  I Q
Sbjct: 412 GLDLPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQ 455


>gi|205374127|ref|ZP_03226927.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 393

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 183/351 (52%), Gaps = 13/351 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            KIFE  P  I +A+ + GY   T +Q+ I+   L     +  +QTG+GKT+A+ L +  
Sbjct: 6   FKIFELKP-FINKAIEKAGYKEPTEIQQLIIPIALNGDSAIGQSQTGTGKTLAYLLPILE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRER 118
           ++    D         A+  APTRELA Q+  E   L  +++  +   + IGG    R  
Sbjct: 65  SINPNKDEVQ------AVITAPTRELAQQIFTEAMKLAEFSEEEITGKLFIGGTDKQRSI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+   H+VVGTPGR+ D +  + LN+     +V+DEAD MLD+GF  D++ I    PK
Sbjct: 119 EKLKKQPHLVVGTPGRIKDLVNEQALNVFSANMLVVDEADLMLDMGFIHDVDQIAGRMPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
             ++L+FSATI   +      Y ++    N+  +    ++I++  +L+    R+   V  
Sbjct: 179 DLQILVFSATIPEKLKPFLNKYMENPEYANVQPKQATAANIEH--ILIPKRSREKVAVVE 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL       AI+F +T+         L++   +V  L G L+ +ER+  ++ +R+   +
Sbjct: 237 TILSGINPYLAIIFTNTKVKADEVAAALSKRGIKVGRLHGGLTPRERTKEMKAIRNLEYQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +ATD+AARGID+  +  +I+ EL  + +  +HR GRT RAG  G++  +
Sbjct: 297 YIVATDLAARGIDIDGVSHIINYELPQDLDFYIHRVGRTARAGLTGVAFTI 347


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 183/344 (53%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     L+
Sbjct: 6   FQLDPSLL-ESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R+S  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L+ 
Sbjct: 65  DFPRRYSGQAR--VLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRY 241
           +FSAT+    +   A+    D + +++ +  ++ + I     L    D   A++ ++L+ 
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLLKQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +AT
Sbjct: 243 EEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 303 DVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
 gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
          Length = 560

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 204/365 (55%), Gaps = 17/365 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L     L +   +F P 
Sbjct: 109 KAIRQMGFKKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIELLYSL--KFKPR 166

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I+PTRELA+Q   V REL   + +T     + IGG +  +E   L  G ++++
Sbjct: 167 NGTGVVIISPTRELALQIFGVARELMEHHTQT---FGIVIGGANRRQEADKLVKGVNLLI 223

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++  +G    +LKA+V+DEAD +L++GF ++++ I+   P + R+ ++FSA
Sbjct: 224 ATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPNEDRQSMLFSA 283

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIV-NILRYHGA 244
           T +  +  LA+ + +   + +N+  E+   + D   +  +V  SD+   ++ + L+ +  
Sbjct: 284 TQTTKVEDLARMSLRPGPLYINVVPESAASTADGLEQGYVVCESDKRFLLLFSFLKRNAK 343

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF S+   V  F ++L      V+ L G+  Q +R+N      + +  + I TDVA
Sbjct: 344 KKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQAKRTNTFFEFCNAKQGILICTDVA 403

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNMQRRAERLFRE 362
           ARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+ F+ P  +     R  + 
Sbjct: 404 ARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGFL--RYLKA 461

Query: 363 ANVSV 367
           ANV +
Sbjct: 462 ANVPL 466


>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 783

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 175/346 (50%), Gaps = 31/346 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--ASAPL 76
           GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL     F P    A  
Sbjct: 166 GYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLL-----FRPKRVQAIR 220

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L + PTRELAVQV   +E L   T +   + +GG+S   +   L++   IVV TPGR+ 
Sbjct: 221 VLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRSMPDIVVATPGRMI 280

Query: 137 DHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+R    +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ ++FSAT++  I  
Sbjct: 281 DHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTMLFSATMTEEINE 340

Query: 196 LAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L K      +R++                  R+  +++  AVL+AL  +           
Sbjct: 341 LIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSKT---------- 390

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +  R   +     F+   L G L+Q +R +AL++ R  +    IATD
Sbjct: 391 FTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIATD 450

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VAARG+D+  ++ VI+        + +HR GRT RAGR+G +V  +
Sbjct: 451 VAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFV 496


>gi|485388|dbj|BAA06336.1| eukaryotic initiation factor 4AII [Homo sapiens]
          Length = 407

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/327 (32%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        +++ 
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVF 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 ASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus
           leucogenys]
          Length = 483

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGA 244
           ++  +  L              +       +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQCFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|302543182|ref|ZP_07295524.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460800|gb|EFL23893.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 498

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/360 (33%), Positives = 186/360 (51%), Gaps = 13/360 (3%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE 85
           +Q A L   L  +DVL   +TGSGKT+AFGLAL +    +  R  P   PL L + PTRE
Sbjct: 85  IQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARTAGQ--RAEPRR-PLGLVLVPTRE 141

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV   L        + +   +GG+++ R+   L+ GA +VV TPGRL D I     +
Sbjct: 142 LAQQVTDALAPYARALKLRLTTVVGGMAIGRQAGALRGGAEVVVATPGRLKDLIDRGDCH 201

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDA 204
           ++ +   VLDEAD+M D+GF   +  +L+   P+ +RML FSAT+   +  L + Y  D 
Sbjct: 202 LNQVGITVLDEADQMADMGFMPQVTALLNQVRPEGQRML-FSATLDRNVDLLVRRYLADP 260

Query: 205 VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           V  ++       + +++  + V  +D+      I    G    I+F  T+ +V + T+ L
Sbjct: 261 VVHSVDPSAGAVTTMEHHLLHVDGADKHATTTEIAARDG--RVIMFLDTKHAVDKLTQHL 318

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
                +  AL G  SQ +R+  L   + G   V +AT+VAARGI + +L+LV++ +   +
Sbjct: 319 LNSGVRAAALHGGKSQPQRTRTLAQFKTGDVTVLVATNVAARGIHVDNLDLVVNVDPPGD 378

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
            ++ LHR GRT RAG  G  V ++    +R   RL   A ++      P    +R  +A+
Sbjct: 379 HKDYLHRGGRTARAGESGSVVTLVLPGQRRDMTRLMSTAGIT------PHTTKVRSGEAE 432


>gi|303312885|ref|XP_003066454.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106116|gb|EER24309.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320031627|gb|EFW13587.1| ATP-dependent RNA helicase HAS1 [Coccidioides posadasii str.
           Silveira]
          Length = 604

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 195/363 (53%), Gaps = 25/363 (6%)

Query: 5   ENIPQVIGE---------ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           EN PQ   E         A+ E G+  +T +Q   + P +  +DVL +A+TGSGKT++F 
Sbjct: 120 ENEPQKFTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFL 179

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGV 112
           +     L A   RF P +    + ++PTRELA+Q   V REL   +++T     + IGG 
Sbjct: 180 IPAVEMLSAL--RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGA 234

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +   E   L  G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  
Sbjct: 235 NRRAEAEKLTKGVNLLIATPGRLLDHLQNTEGFVFKNLKALVIDEADRILEVGFEDEMRQ 294

Query: 172 ILDSSPKK-RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           I+   P + R+ ++FSAT +  +  LA+ + +   + +N+    ++HS ++       + 
Sbjct: 295 IVKILPSEDRQTMLFSATQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVIC 353

Query: 230 DRDN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           D D     + + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N 
Sbjct: 354 DSDKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNT 413

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV 345
                + +    I TDVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+
Sbjct: 414 FFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSL 473

Query: 346 FVI 348
             +
Sbjct: 474 MFL 476


>gi|67537466|ref|XP_662507.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|74657196|sp|Q5B3H7|DBP8_EMENI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|40741791|gb|EAA60981.1| hypothetical protein AN4903.2 [Aspergillus nidulans FGSC A4]
 gi|259482230|tpe|CBF76513.1| TPA: ATP-dependent RNA helicase dbp8 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B3H7] [Aspergillus
           nidulans FGSC A4]
          Length = 525

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 195/361 (54%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q A +   L+ +D +  ++TGSGKT+AF + +        D
Sbjct: 104 PWLVG-SLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKW--AED 160

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +  +L    H+
Sbjct: 161 PF----GIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHV 216

Query: 128 VVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILD--SSPK 178
           VV TPGRL DHI   G +    +  ++ VVLDEAD +L  G      D+E  L     P 
Sbjct: 217 VVATPGRLADHINTSGTDTVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPS 276

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQHSDIDYRA--VLVALSDRD 232
           +R+ L+F+AT++P   A+ ++ +   K  + V  I++E +       R   V V L+ R+
Sbjct: 277 QRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHRE 336

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     +  K+AIVF +T  S     ++L     +V +L   L Q ER++ L  
Sbjct: 337 -AFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLAR 395

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   ARV +ATDVA+RG+D+P + LV++ E+  NP++ +HR GRT RAGR G +V ++ 
Sbjct: 396 FRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVG 455

Query: 350 Q 350
           Q
Sbjct: 456 Q 456


>gi|293391525|ref|ZP_06635859.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952059|gb|EFE02178.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 178/346 (51%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+++  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL
Sbjct: 10  FDLAPELLN-ALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQHLL 68

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  R  P  AP  L + PTRELA+QV  + + L   T + +A   GGV+          
Sbjct: 69  -DYPRRKPG-APRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIFNK 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L
Sbjct: 127 NQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTL 186

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
           +FSAT+    +   A     + V++      R+   I    Y A   +   +   +   +
Sbjct: 187 LFSATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHA--DSHEHKFKLLARFI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V +
Sbjct: 245 EQEQVSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVTVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +TDV+ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V
Sbjct: 305 STDVSARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAV 350


>gi|190195544|gb|ACE73640.1| ATP-dependent RNA helicase DDX18 (predicted) [Sorex araneus]
          Length = 553

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 196/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 75  KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF--LIPAVELIVKLKFMPR 132

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 133 NGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 192

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 193 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 252

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +  K  
Sbjct: 253 KVEDLARISLKKEPLYVGV-DDDKTNATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 311

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 312 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 371

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 372 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 418


>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 396

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 181/349 (51%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           + Q I  A+SE GY   T++Q   +   L  +D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPILEKLSQGE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L +APTRELA+QV ++++       +      GGV    +++ L  G 
Sbjct: 68  TQRKKRIRA---LILAPTRELAIQVEQKVQEYGKHLNLTSLAMYGGVDEQPQKQALIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + +    ++ +VLDEAD MLD+GF +DI  ILD  P   + L+F
Sbjct: 125 DILVATPGRLLDMYAKRAVYFEEVEILVLDEADRMLDMGFIEDINKILDRLPTDIQNLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    +   ++IA+      +I+   + V    +   + ++++ +   
Sbjct: 185 SATLSNKVRDLAKTAVHNPYEISIAANQASKKNIEQWLITVDKDMKSALLSHLIKENEWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +   +  A     SQ  RS  L+  + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLEDFKAGKIKYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+  L  VI+ +L    +  +HR GRTGRA  +G ++ FV   N +
Sbjct: 305 RGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFK 353


>gi|294868682|ref|XP_002765642.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239865721|gb|EEQ98359.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 367

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 147/275 (53%), Gaps = 1/275 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           A  +APTREL VQ G++ E L A   +  A  +GG+ +  +   L    HI+V +PGRL 
Sbjct: 32  ACVLAPTRELCVQTGQQFEGLGASINLTTATIVGGLDMVTQAMSLSKKPHIIVASPGRLV 91

Query: 137 DHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+   KG ++  +K +V+DEAD +L + F D +  I+ S P+ R+  +FSAT++  ++ 
Sbjct: 92  DHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRDRQTFLFSATMTNKVSQ 151

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           L +      V+  +A +      +    + V    +   +  +L +      ++F  T  
Sbjct: 152 LQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCL 211

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +  R    L       V L G+++Q  R  AL   R G   + +ATDVAARG+D+P +++
Sbjct: 212 NAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSILVATDVAARGLDIPSVDV 271

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           VI+ ++  NPE  +HR GRT RAGR G SV ++ Q
Sbjct: 272 VINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQ 306


>gi|19115400|ref|NP_594488.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1351666|sp|Q09916|HAS1_SCHPO RecName: Full=ATP-dependent RNA helicase has1
 gi|1067204|emb|CAA91949.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/353 (32%), Positives = 194/353 (54%), Gaps = 17/353 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +     L A   +F 
Sbjct: 100 IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYAL--KFK 157

Query: 71  PASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P +    + I+PTRELA+Q   V +EL   + +T     + IGG +   E   L  G ++
Sbjct: 158 PRNGTGVIIISPTRELALQIFGVAKELLKYHHQT---FGIVIGGANRRAEADKLVKGVNL 214

Query: 128 VVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMF 185
           +V TPGRL DH++  KG    +L+++V+DEAD +L++GF D++  I+   P + R+ L+F
Sbjct: 215 LVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLF 274

Query: 186 SATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+ + +   + VN+ S     +   ++   V+V    R   + + L+ +
Sbjct: 275 SATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRN 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+ ASV    ++L      V+ L G+  QQ R+N      +    + + T+
Sbjct: 335 LKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTN 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQNM 352
           VAARG+D+P ++ ++  +   +P + +HR GRT R G KG     +F+ P  +
Sbjct: 395 VAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSEL 446


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 190/361 (52%), Gaps = 10/361 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   + ++G+   T +Q       L   +++  A+TGSGKT+  G  L + +   
Sbjct: 124 DMPDYVLNEIEKQGFQRPTPIQAQGWPIALSGLNMVGVAKTGSGKTL--GYMLPAIVHIN 181

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN 123
           + +  P+   PL L +APTRELA Q+ +++   +  +  +   C+ GG S   +  DL+ 
Sbjct: 182 HQKPDPSVRGPLVLVLAPTRELAQQI-QQVATDFGSSSYIRNTCLFGGSSKGPQASDLRR 240

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D +      +  +  +VLDEAD MLD+GF   I  IL+     R++L
Sbjct: 241 GVEIVIATPGRLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILEQVRPDRQIL 300

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M+SAT    +  LA+++  D V++N+ S E   + +I     ++   +++  +  +L   
Sbjct: 301 MWSATWPKEVQRLARDFLGDYVQINVGSLELSANHNITQYVKVIEEHEKNEQLGKLLDNL 360

Query: 243 GAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            A+      ++F +T+    + T  L  +    V + G+ SQQER  AL   R+  + + 
Sbjct: 361 SARGPAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNSNSCIL 420

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +++VI+ +     E+ +HR GRTGR+   G +      N ++ A+ 
Sbjct: 421 VATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGEAYTFFTSNERKMAKE 480

Query: 359 L 359
           L
Sbjct: 481 L 481


>gi|225351817|ref|ZP_03742840.1| hypothetical protein BIFPSEUDO_03418 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157064|gb|EEG70403.1| hypothetical protein BIFPSEUDO_03418 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 690

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/367 (33%), Positives = 176/367 (47%), Gaps = 27/367 (7%)

Query: 26  VQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA--------------STLLAENDRFSP 71
           +Q   L   L  +D+L   +TGSGKT+AF + L               S    E DR   
Sbjct: 52  IQADTLPDSLAGRDILGRGRTGSGKTLAFSIPLVARLGEVDANEYENMSQFRHEVDRVKQ 111

Query: 72  ASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           A A           P  L +APTRELA Q+   L  L    G+      GGV   R+ RD
Sbjct: 112 AHAKERRADDFVPHPRGLVLAPTRELANQINDVLMPLAQIYGINTTTVYGGVRYARQIRD 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA IVV  PGRL D I    L +  ++  V+DEADEM D+GF   ++ +L       
Sbjct: 172 LQAGADIVVACPGRLEDLIEQGALTLDKVEVAVIDEADEMADMGFLPPVKRLLGQISFDA 231

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSAT+   +  + + +  D    ++ S      ++ +        +R   +  +  
Sbjct: 232 QIMLFSATLDHGVDEVVETFLSDPKVHSVDSATATVDEMTHHVFKTTQGNRHELVRTLAS 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  I+F  T+    +  K L ++      L G LSQ +R   L     G   V +A
Sbjct: 292 GKGRR--ILFTRTKFQTQKLAKDLTQNGIPAAELHGNLSQNQRDRNLAAFNSGDVNVMVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +ELV+  E   +P++ LHRSGRT RAG  G  V +I  N +RR  R+ 
Sbjct: 350 TDVAARGIDVSGVELVVQVEPPEDPKSFLHRSGRTARAGHSGDVVTIILPNQRRRTRRMM 409

Query: 361 REANVSV 367
           REA ++V
Sbjct: 410 REAGLTV 416


>gi|114580554|ref|XP_515753.2| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 3 [Pan
           troglodytes]
          Length = 670

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +  K  
Sbjct: 370 KVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 428

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG
Sbjct: 429 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARG 488

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 489 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|303282327|ref|XP_003060455.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
 gi|226457926|gb|EEH55224.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
          Length = 671

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/371 (31%), Positives = 182/371 (49%), Gaps = 16/371 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L+ +G    T +Q   L   L  +D++  A TGSGK++ F L +  + + E 
Sbjct: 231 FPGPILNELARKGIARPTPIQIQGLPVILTGRDIIGIAFTGSGKSLTFILPMIMSAMMEE 290

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWL---YAKTGVV---VAVCIGGVSVHRER 118
            R        P  L + P+RELA Q    +E      +K G+    + +CIGG+   RE+
Sbjct: 291 RRMPLQGMEGPCGLILCPSRELARQTHEVIEGFTVELSKQGMSEMRIMLCIGGID-SREQ 349

Query: 119 RDL--QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            D+    G H+V  TPGRL D +  K +N+   K + LDEAD M+DLGF DDI  I    
Sbjct: 350 SDIVRDRGVHMVTATPGRLKDLLHRKRMNLDICKYLCLDEADRMVDLGFEDDIRDIYSFF 409

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A++   + + VN+      + D+      V    +   ++
Sbjct: 410 KSQRQTLLFSATMPVKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 469

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   A   ++FC  +A V    + L     + VA+ G   Q ER   +   +  R  
Sbjct: 470 ECLQ-KTAPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKGQDERDWGISEFKSERKD 528

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA +G+D P+++ VI+ ++    EN +HR GRTGR G+ G++   I +N     
Sbjct: 529 VLVATDVAGKGLDFPNIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFINKNQSETT 588

Query: 357 ----ERLFREA 363
               + L REA
Sbjct: 589 LLDLKHLLREA 599


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 179/341 (52%), Gaps = 17/341 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ++ L   ++ +D++  AQTGSGKT AF   + S +L +     P +A     
Sbjct: 305 YTKPTPVQKSALPIIMKGRDLMACAQTGSGKTAAFLFPIISGILLDGAP-EPLAAYRPGV 363

Query: 75  -----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL +APTRELA+Q+  E       + V   V  GG  +  +  +L  G  I+V
Sbjct: 364 PRPVHPRALVLAPTRELALQIYDEASKFSYGSPVTSVVVYGGAEISHQIAELDRGCDILV 423

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS---PKKRRMLMF 185
            T GRL D +    ++++H+K +VLDEAD MLD+GF   I + ++D+     + R+ LMF
Sbjct: 424 ATTGRLVDLLSRGRVSLAHVKYLVLDEADRMLDMGFEPQIRQIVVDNDMPGNRDRQTLMF 483

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA ++  + + + +        +I  R   V   ++++ +++ L    + 
Sbjct: 484 SATFPKPIQNLASDFLNNYIFLKVGVIGTTQ-NITQRIEYVQDDEKNSYLLDFLSTLKSD 542

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+      T  L    F    + G+LSQ ER +AL   R  +    +ATDVA
Sbjct: 543 GLTLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERESALNSFRTNQTPYLVATDVA 602

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +RG+ +P++  VI+ +L ++    +HR GRTGRAG+KG ++
Sbjct: 603 SRGLHIPNVLYVINFDLPTDIHVYVHRIGRTGRAGKKGFAI 643


>gi|229048004|ref|ZP_04193580.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
 gi|228723461|gb|EEL74830.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|194222171|ref|XP_001916624.1| PREDICTED: similar to DEAD box polypeptide 18 (predicted) [Equus
           caballus]
          Length = 623

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 145 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF--LIPAVELIVKLKFMPR 202

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 203 NGTGVLILSPTRELAMQTFGVLKELMTHHIHTYGLIMGGSNRSAEAQKLANGINIIVATP 262

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 263 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 322

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 323 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 382

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 383 VFFSSCKSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARGL 442

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 443 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 488


>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 397

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|321473575|gb|EFX84542.1| hypothetical protein DAPPUDRAFT_223010 [Daphnia pulex]
          Length = 869

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 199/365 (54%), Gaps = 14/365 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++IP  +   + L +  Y   T VQ+  +   LR  DVL +A+TGSGKT+AF + +   
Sbjct: 69  FKDIPLSKKTLQGLQQNEYTTPTEVQKESIVLALRGLDVLGAAKTGSGKTLAFVIPVLER 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++      AL I PTRELA Q+      +  +      + IGG  ++ ER+ L
Sbjct: 129 LYCM--QWTRLDGLGALIITPTRELAYQIFETFRKVGIQHDFSAGLIIGGKDLNFERKRL 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  +I++ TPGR+  H+    L + S+L+ +V+DEAD  LDLGF+  +  I+++ P KR
Sbjct: 187 -DQCNIMICTPGRVLHHMDENPLFDCSNLQILVIDEADRCLDLGFQQTMNGIIENLPPKR 245

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAIVN 237
           + L+FSAT + ++  LA+   KD V V++  EN Q+S    +    ++  + ++ + + +
Sbjct: 246 QTLLFSATQTKSVKDLARLSLKDPVYVSV-HENAQYSTPESLRQSYIITPIQNKVDILWS 304

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGR 294
            LR H  K  IVF ++   V RF       L     V+AL G + Q +R +  +   + +
Sbjct: 305 FLRSHRKKKLIVFLTSCKQV-RFIHQAFTRLRPGLSVLALYGTMHQMKRMSVYEEFCEKQ 363

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P+++ VI  +   +P + +HR+GRT R  + G S+ ++  + + 
Sbjct: 364 TAVLFATDIAARGLDFPNVDWVIQMDCPDDPSSYIHRAGRTARYQKGGESLLMLLPSEEA 423

Query: 355 RAERL 359
             E+L
Sbjct: 424 MVEQL 428


>gi|224056049|ref|XP_002193612.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Taeniopygia
           guttata]
          Length = 858

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +++ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 380 KGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF--LIPAVELIYKLKFMPR 437

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 438 NGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 497

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 498 GRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTR 557

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LAK + +K+ + V +  +N++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 558 KVEDLAKISLKKEPLYVGV-DDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 616

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 617 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARG 676

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 677 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 723



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +++ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 144 KGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF--LIPAVELIYKLKFMPR 201

Query: 73  SAPLALAIAPTRELAVQV 90
           +    + ++PTRELA+Q 
Sbjct: 202 NGTGVIILSPTRELAMQT 219


>gi|148273828|ref|YP_001223389.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831758|emb|CAN02727.1| putative ATP-dependent helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 556

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 179/375 (47%), Gaps = 6/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL+  G      +Q   L   L  +DVL   +TGSGKT+AF + + + L   
Sbjct: 53  GVPAPLVSALTANGITTPFPIQVDTLPDTLNGRDVLGRGKTGSGKTLAFAIPMIARLGGG 112

Query: 66  NDRFSPASAPLALAI-APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                         I APTRELA Q+   +  L     +      GGVS  R+   L+ G
Sbjct: 113 LAGGRRRPGRPLGLILAPTRELATQITAAMAPLAEAYNLTTTTIFGGVSQQRQVAALKAG 172

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VV  PGRL D ++   +N+  ++  VLDEAD M DLGF   +  ILD +P   + ++
Sbjct: 173 VDVVVACPGRLEDLMKQGFVNLDAVEITVLDEADHMADLGFLPVVTRILDKTPNTGQRML 232

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + Y  D V  ++   N   + + +        +    +V  L   G 
Sbjct: 233 FSATLDNGVDKLVRRYLHDQVLHSVDEANSPVAAMTHHVFEATDVEAKRLLVQKL-AGGT 291

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+    +  K L +     V L G LSQ  R   L     G  +V +ATDVA
Sbjct: 292 GRRILFMRTKHHAKKLAKQLTDAGIPSVDLHGNLSQVARDRNLAAFSAGDVKVLVATDVA 351

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V ++    ++  + L R+A+
Sbjct: 352 ARGVHVDDIELVIHVDPPAEHKAYLHRSGRTARAGSAGDVVTIMLPAQRKDVQLLMRKAD 411

Query: 365 VSV----VWEPAPSV 375
           + V    V E +P+V
Sbjct: 412 IHVTPQQVTESSPAV 426


>gi|126324314|ref|XP_001375375.1| PREDICTED: similar to ATP-dependent RNA helicase DDX55 (DEAD box
           protein 55) [Monodelphis domestica]
          Length = 599

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/362 (32%), Positives = 198/362 (54%), Gaps = 25/362 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  AL E G+  +T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLA-ALRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILQILLKREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRE-RRDLQNG 124
           +        A+ I PTRELA+Q+  E+   ++K     +  + IGG +   +  R  + G
Sbjct: 77  KLKKMQVG-AIIITPTRELAIQIN-EVLLHFSKHFPQFSQILLIGGRNPGEDVERFKEQG 134

Query: 125 AHIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +I+V TPGRL D  R K  GL++++    L  +VLDEAD +LD+GF   I  IL+  PK
Sbjct: 135 GNIIVATPGRLEDMFRRKAEGLDLANCVKSLDVLVLDEADRLLDMGFEASINTILEFLPK 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDR 231
           +RR  +FSAT +  +  L +   ++ VR+++        S  +  S ++   ++    ++
Sbjct: 195 QRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAATSTQKTPSRLENYYMVCKADEK 254

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF---QVVALSGELSQQERSNALQ 288
            N +V+ L+ H  +  +VF ST A V  + K L E L    +++ + G++ + +R+    
Sbjct: 255 FNQLVHFLQNHKQEKHLVFFSTCACVEYYGKAL-EALIKNAKIMCIHGKM-KYKRNKIFM 312

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFV 347
             R+ ++ + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G + VF+
Sbjct: 313 EFRNLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHTGSALVFL 372

Query: 348 IP 349
           +P
Sbjct: 373 LP 374


>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
          Length = 755

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 194/409 (47%), Gaps = 47/409 (11%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSPA 72
           +++G   +T +Q     P    KD++  ++TGSGKT+AF L L   L      N++F   
Sbjct: 159 NKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEKFEEE 218

Query: 73  SA-------------------------------------PLALAIAPTRELAVQVGRELE 95
           +                                      P  L + PTREL+ QV    +
Sbjct: 219 NGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILVLEPTRELSKQVENTFK 278

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            +       +    GG S   +   L+ G  I+ GTPGR+ DHI  K L++ ++K VVLD
Sbjct: 279 EISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVVLD 338

Query: 156 EADEMLDLGFRDDIEFILDS-SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-SEN 213
           EADEML+LGF  DIE IL + + K+ ++L++SAT    I  ++  Y K+   +++  S N
Sbjct: 339 EADEMLNLGFTHDIERILSNINLKEAQVLLYSATTPSWIKDISSKYLKNPFCIDVVDSSN 398

Query: 214 RQHSDIDYRAVLVALSDRDNAI----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
           +   +I + A+      ++ A+    + +++ +G +  I+F  T+          +    
Sbjct: 399 KTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQ-VIIFTRTKLEADILCSEGSFKSL 457

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
               L G ++Q  R   +Q  R G  ++ IATD+A+RG+D+ +++LVI     +     +
Sbjct: 458 SFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQCFPPNYSAVYI 517

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           HR+GRTGRA +KG S+ +     ++   ++ +   +    E  P+ E +
Sbjct: 518 HRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPNNEQV 566


>gi|327282024|ref|XP_003225744.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Anolis
           carolinensis]
          Length = 406

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  +
Sbjct: 38  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEID 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPMDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 397

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKETKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|70999626|ref|XP_754530.1| ATP dependent RNA helicase (Dbp8) [Aspergillus fumigatus Af293]
 gi|74674345|sp|Q4WXW1|DBP8_ASPFU RecName: Full=ATP-dependent RNA helicase dbp8
 gi|66852167|gb|EAL92492.1| ATP dependent RNA helicase (Dbp8), putative [Aspergillus fumigatus
           Af293]
          Length = 526

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/360 (31%), Positives = 194/360 (53%), Gaps = 24/360 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q+A +   L+ +D +  ++TGSGKT+AF + +        D
Sbjct: 105 PWLVG-SLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKW--AED 161

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F        + + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 162 PF----GIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHV 217

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP--K 178
           V+ TPGRL DHI+  G      +  ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 218 VIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSS 277

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSDRD 232
           +R+ L+F+AT++P   A+  + ++  K  V V  I++EN+      +    + V L+ R+
Sbjct: 278 ERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGTIPPTLKQTYLKVPLTHRE 337

Query: 233 NAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +L   G  +K AIVFC+   +     ++L     +V +L   L Q ER+  L   
Sbjct: 338 AFLHVLLSTEGNASKPAIVFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLARF 397

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R   AR+ +ATDVA+RG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++ Q
Sbjct: 398 RASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAVTLVGQ 457


>gi|302786878|ref|XP_002975210.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
 gi|300157369|gb|EFJ23995.1| hypothetical protein SELMODRAFT_150370 [Selaginella moellendorffii]
          Length = 626

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/342 (33%), Positives = 183/342 (53%), Gaps = 10/342 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPAS 73
           L E+G   L  +Q    +  L   D++  A+TG GKT+AF L +  +L  + + +     
Sbjct: 58  LREKGIKALFQIQAQSFDIVLDGDDLVGRARTGQGKTLAFVLPIIESLRKSSSGKKGYGR 117

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           AP  L +APTRELA QV  + E      G+      GG     ++  ++ G  IVVGTPG
Sbjct: 118 APTVLVLAPTRELAKQVHADFECYGGAAGLSTICVYGGSQYGPQQNAMRRGVDIVVGTPG 177

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSATISP 191
           R+ D +    LN+  LK  VLDEADEML++GF + +E IL +       + L+FSAT+  
Sbjct: 178 RIKDFLDRGDLNLKTLKFRVLDEADEMLNMGFVEAVEAILGAVEDTSSVQTLLFSATMPS 237

Query: 192 AITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKN-A 247
            +  +A  + K +   V++  + +  +  + + +L+  A S R   I ++++ +G+    
Sbjct: 238 WVKEIATRFLKPNKKTVDLVGDEKMKASNNVKHLLLQCAYSARSQMIADVIKVYGSGGRV 297

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+   S     L  ++ +   L G++ Q +R + L   R  +  V +ATDVAARG
Sbjct: 298 IVFTETKNDASELAGSLGTNVAR--PLHGDIPQAQREHTLAGFRSAKFLVLVATDVAARG 355

Query: 308 IDLPDLELVI-HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D+ D++L+I   E   + E  +HRSGRTGRAG  G++V + 
Sbjct: 356 LDINDVQLIIQQCEPPKDVETYIHRSGRTGRAGNTGIAVMMF 397


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 189/372 (50%), Gaps = 28/372 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA------- 72
           +   T VQ+  +      +D++  AQTGSGKT  F   +    L+E  +  PA       
Sbjct: 158 FTKPTPVQKYSVPIVSNHRDLMACAQTGSGKTGGFLFPV----LSECFQTGPAPIEVESE 213

Query: 73  -------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P  L +APTREL  Q+  E +    ++ +   V  GG ++  +  DL  G 
Sbjct: 214 TVFRKHRAYPTILVMAPTRELVSQIYDEAKKFAYRSWMRPCVVYGGANIRDQMEDLILGC 273

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRR 181
            ++V TPGRL D +    ++++ +K ++LDEAD MLD+GF   I  I+      S  +R 
Sbjct: 274 DLLVATPGRLSDLLERGKISLAKIKYLILDEADRMLDMGFEPQIRHIVQGCDMPSVNERH 333

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    I  LAK++ KD + +++        +I  R + V   ++ + +++IL  
Sbjct: 334 TLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQRVLSVEDDEKKSVLLDILSS 393

Query: 242 HGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    ++F  T+      +  L    F   ++ G+ +QQER +AL + + G A + 
Sbjct: 394 SDDIKEGLTLIFVETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHLFKSGAAPIL 453

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRR 355
           +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++   +    +N+ + 
Sbjct: 454 VATAVAARGLDIPNVTHVVNYDLPADIDDYVHRIGRTGRAGNVGIATAFVNRGNKNLIKG 513

Query: 356 AERLFREANVSV 367
              L  EAN  V
Sbjct: 514 LIELLTEANQEV 525


>gi|224006724|ref|XP_002292322.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971964|gb|EED90297.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 663

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 189/373 (50%), Gaps = 16/373 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I EAL ++     T +Q   L   L  +D++  A TGSGKT++F L L    L E 
Sbjct: 224 FPPPIMEALKKKNVKRPTPIQMQGLTVALSGRDMVGIAFTGSGKTLSFSLPLVMAALEEE 283

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGREL-EWLYAKT-------GVVVAVCIGGVSVHR 116
            R    P   P+ + +AP+RELA Q    + E+  A T        +   + IGG S   
Sbjct: 284 ARMPLVPGEGPVGIVLAPSRELARQTYEVVTEFCTALTESGGRYPSIRSQLLIGGESARD 343

Query: 117 ERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +  ++ G H VV TPGRL D ++ + +N+   + + LDEAD MLDLGF +++  I++ 
Sbjct: 344 QLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLDLGFDEEVGEIMNH 403

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +R+ +++SAT        AK      V VN+      + D+      V    +   +
Sbjct: 404 FHHQRQTILYSATFPKKFQDFAKQTLVRPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYL 463

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L+   A   ++FC  +  V    + L     + V++ G   Q+ER+ A+ + + G+ 
Sbjct: 464 LECLQ-KTAPPVVIFCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEAIALYKAGKK 522

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATD+AA+G+D  D++ VI+ ++ S  EN +HR GRTGR G+ G++   I ++ +  
Sbjct: 523 DVLVATDIAAKGLDFADIQHVINFDMPSEIENYVHRIGRTGRCGKTGVATTFINKSCEET 582

Query: 356 A----ERLFREAN 364
                + L +EA+
Sbjct: 583 TLLDLKHLLKEAH 595


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 177/333 (53%), Gaps = 5/333 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T++Q       L+ +D++  A+TGSGKT+A+ L  A   +      +    
Sbjct: 185 LERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLPAIVHINAQPHLAHGDG 243

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPG 133
           P+ L +APTRELAVQ+ +E    +  +  + + CI GG     + RDLQ G  IV+ TPG
Sbjct: 244 PIVLVLAPTRELAVQIQQE-SVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPG 302

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +SAT    +
Sbjct: 303 RLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSATWPREV 362

Query: 194 TTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFC 251
             LA+ +  +  +V I S + + +  I     +V+  ++   ++ +L         ++F 
Sbjct: 363 ENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSRILIFM 422

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATDVAARG+D+ 
Sbjct: 423 ETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAARGLDVK 482

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D++ VI+ +   + E+ +HR GRTGRAG KG +
Sbjct: 483 DIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTA 515


>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 815

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 179/348 (51%), Gaps = 11/348 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+  G+ + T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 310 NLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPILERLL-- 367

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +  + + PTRELAVQ       L   T V     +GG S+  +   L+ 
Sbjct: 368 ---FRPRKVPTSRVVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQENVLKK 424

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 425 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNIL 239
           ++FSAT++ +I  L +      VR+ + S+    S +    V +     D     ++++ 
Sbjct: 485 MLFSATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYLLHLC 544

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   +K  I+F   +    R   + +    +   L G LSQ++R  +++  RDG+    +
Sbjct: 545 KEIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRIKSVENFRDGKVAFLL 604

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 605 ATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 652


>gi|218231735|ref|YP_002369093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228960551|ref|ZP_04122200.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229111759|ref|ZP_04241307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|229129563|ref|ZP_04258533.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|229146871|ref|ZP_04275236.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|229152486|ref|ZP_04280678.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|218159692|gb|ACK59684.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228631094|gb|EEK87731.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|228636699|gb|EEK93164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|228653880|gb|EEL09748.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|228671753|gb|EEL27049.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|228799151|gb|EEM46119.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
 gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
          Length = 401

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 187/338 (55%), Gaps = 8/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  IVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEMLSKGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
               A   + + PTRELAVQV + ++  YAK   + ++ + GGVS   ++  L  G  I+
Sbjct: 72  KRIRA---VILTPTRELAVQVEQNIKK-YAKFLNLTSLAMYGGVSYQHQKDRLIEGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FSAT
Sbjct: 128 VATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNA 247
           +S  +  LAK+   DA  ++IA  +   ++I+   V V   DR +A+++ +   G    A
Sbjct: 188 LSTPVRALAKSAISDAEEISIAKTDASKANIEQWLVTVD-KDRKSALLSHMITEGNWDQA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+   ++    L +   Q  A     SQ  R   L   + G  +  +AT VAARG
Sbjct: 247 LIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGHLKFLVATGVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+ +L  V++ ++    ++ +HR GRTGRA   G ++
Sbjct: 307 IDIDNLPRVVNYDMPFPADDYVHRIGRTGRADATGEAI 344


>gi|110637075|ref|YP_677282.1| ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279756|gb|ABG57942.1| ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
          Length = 446

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 178/342 (52%), Gaps = 12/342 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+     +L  +QE  L  + +  DV++ + TGSGKT+ F L +   L   ++   
Sbjct: 7   IEQLLNNVSIESLNDMQEDSLAANAKASDVILLSPTGSGKTLGFLLPVFQQLSVSSNSIQ 66

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + P+RELA+Q+    + L  KTG  V  C GG  +  E  +L     +++G
Sbjct: 67  ------ALVLVPSRELALQIESVFKSL--KTGFKVTCCYGGHPMDVEENNLAQSPALLIG 118

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DHI  + +N+  +K +VLDE D+ L++GF++D+  I+      ++ ++ SAT +
Sbjct: 119 TPGRIVDHINRRNINLDDVKTLVLDEFDKSLEMGFQEDMAIIIGRLTGIKKRILTSATQA 178

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I        +  V +N  +   Q S +  + VL    D+ + ++ +L   G ++ IVF
Sbjct: 179 IKIPDFTG--MQSPVTLNYIT--GQASGLSVKTVLSDTKDKFDTLLRLLCQIGNESVIVF 234

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+ R  V      L EH        G L Q+ R + L   R+G   V + TD+AARG+D+
Sbjct: 235 CNQRDEVENVCAYLTEHGIINNNFHGGLEQRYRESTLTKFRNGSTNVLVTTDLAARGLDI 294

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           PD++ VIH ++    +   HR+GRT R G  G +  ++ +++
Sbjct: 295 PDVKHVIHYQMPHKIDAFTHRNGRTARMGSTGNAYMLLHKDV 336


>gi|296504780|ref|YP_003666480.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296325832|gb|ADH08760.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|302692692|ref|XP_003036025.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
 gi|300109721|gb|EFJ01123.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
          Length = 760

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 181/392 (46%), Gaps = 58/392 (14%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL------A 59
           +IP  I + +   GY   + +Q   +   L+ +D++  A+TGSGKT AF + L       
Sbjct: 321 DIPSSILDVIETIGYKEPSPIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPLLAFISAV 380

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L  EN        P AL +APTRELA Q+  E     +  G      +GG SV  ++ 
Sbjct: 381 APLTDENRHL----GPFALILAPTRELAQQIEVETRKFASGLGYTCVSIVGGRSVEEQQF 436

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
           +L+ GA I++ TPGRL D +    L +S  + VV+DEAD M+ LGF  D+ FILD  P  
Sbjct: 437 NLREGAEIIIATPGRLKDVLERHVLVLSQCRYVVMDEADRMVHLGFEPDLNFILDQLPAE 496

Query: 178 ----------------------------------------KKRRMLMFSATISPAITTLA 197
                                                   + R   +FSAT+ PA+  LA
Sbjct: 497 TMEGEESGDMMVVDDNRKHRHDDHAMDIDGEQRMKLVKKGRTRVTTLFSATMPPAVERLA 556

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----AIVNILRYHGAKNAIVFCST 253
           + Y +    + I    R    ++ R   V   ++       I+N  +Y      IVF + 
Sbjct: 557 RKYLRRPAIITIGEAGRAVDTVEQRVEFVNGDEKKKHRLLEILNSGQY--PSPIIVFVNQ 614

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K L    +    L    +Q++R  AL  +R G A + +ATD+A RGID+ D+
Sbjct: 615 KKMADMVAKDLGRAGWSASTLHSGKNQEQREAALASLRSGEADILVATDLAGRGIDVQDV 674

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LV++ +++   E  +HR GRTGRAG+ G ++
Sbjct: 675 SLVVNFQMAGTIEAYVHRIGRTGRAGKLGTAI 706


>gi|302414618|ref|XP_003005141.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
 gi|261356210|gb|EEY18638.1| ATP-dependent RNA helicase eIF4A [Verticillium albo-atrum VaMs.102]
          Length = 397

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 188/347 (54%), Gaps = 12/347 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-A 77
           G+   +++Q   + P ++  DV+  AQ+G+GKT  F +++         +  PA     A
Sbjct: 43  GFERPSAIQARAIMPVVKGNDVIAQAQSGTGKTATFSISVLQ-------KIDPAVKQCQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D
Sbjct: 96  LILAPTRELAQQIQKVVIAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 156 MIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 215

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D +R+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 216 TKFMRDPIRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 275

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 276 VDWLTDKLTARDFTVSAMHGDMDQGQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 335

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           I+ +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 336 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTAEDVRMMREIEQFY 382


>gi|228941450|ref|ZP_04104001.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974381|ref|ZP_04134950.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980974|ref|ZP_04141277.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228778765|gb|EEM27029.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228785431|gb|EEM33441.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818231|gb|EEM64305.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 397

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|320586265|gb|EFW98944.1| dead box ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 623

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 202/381 (53%), Gaps = 15/381 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ G+  +T++Q   L P L  KDVL +A+TGSGKT+AF +     L A   +F P 
Sbjct: 147 QGLADMGFETMTAIQRRALPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLFAL--KFKPR 204

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + + PTRELA+Q+    + L A       + +GG +   E   L  G +++V TP
Sbjct: 205 NGVGVVVVTPTRELALQIWGVAQELMAHHTQTTGIVMGGANRRAEAEKLGRGVNLLVATP 264

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        HL+++++DEAD +L++GF D++  I+   PK+R+ ++FSAT + 
Sbjct: 265 GRLLDHLQNTPNFLYKHLRSLIIDEADRILEVGFEDELRQIIKILPKERQTMLFSATQTQ 324

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL-RYHGAKN 246
            I  LAK + + + + +N+  E +Q S +D      V+    DR   + + L R  G K 
Sbjct: 325 KIDDLAKVSLRANPLYLNV-DEAQQFSTVDGLEQGYVVCGSQDRFLLLWSFLKRMAGKKK 383

Query: 247 AIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            IVF S+  SV     +L    L  V+ L G+  Q +R++      +    + + TDVAA
Sbjct: 384 VIVFFSSCNSVKYHADLLRYIDLGGVLDLHGKQKQAKRTSTFFEFCNAEQGILLCTDVAA 443

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFREA 363
           RG+D+P ++ ++  +   +    +HR GRT R   GR    +F++P  +   A    REA
Sbjct: 444 RGLDIPAVDWIVQFDPPDDGRAYVHRVGRTARGTEGRGKSLLFLLPSEVGFLA--YLREA 501

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            V VV    P+ + +R   AQ
Sbjct: 502 RVPVVEYEFPTSK-VRNVQAQ 521


>gi|62630202|gb|AAX88947.1| unknown [Homo sapiens]
          Length = 546

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 188/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    RF P 
Sbjct: 68  KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF--LIPAVELIVKLRFMPR 125

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 126 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 185

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 186 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 245

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 246 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 305

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 306 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 365

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 366 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 411


>gi|224060745|ref|XP_002196090.1| PREDICTED: eukaryotic translation initiation factor 4A2
           [Taeniopygia guttata]
          Length = 407

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  +
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEID 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ------LKESQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPMDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 177/347 (51%), Gaps = 4/347 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E + + GY   T +Q+  +      +D++  AQTGSGKT +F L + S LL +    
Sbjct: 275 IIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIISKLLDDPQDL 334

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P A+ ++PTRELA+Q+  E      +T + + +  GG S   +   +  G+H+++
Sbjct: 335 E-FGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCITKGSHVLI 393

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSA 187
            T GRL D +    +     + VVLDEAD MLD+GF + +  ++   +   + + LMFSA
Sbjct: 394 ATLGRLLDFVDRAFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQHQTLMFSA 453

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA  +  + V V I       SD+      V+  ++   ++ ILR   A   
Sbjct: 454 TFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAKLMEILREE-ADGT 512

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG
Sbjct: 513 IVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 572

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +D+ +++ VI+ ++  N ++ +HR GRTGR G  G +      +  R
Sbjct: 573 LDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPDQDR 619


>gi|121705654|ref|XP_001271090.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034080|sp|A1CKJ0|DBP8_ASPCL RecName: Full=ATP-dependent RNA helicase dbp8
 gi|119399236|gb|EAW09664.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 523

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 188/363 (51%), Gaps = 30/363 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q+A +   L  KD +  ++TGSGKT+AF + +         
Sbjct: 102 PWLVG-SLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQKW----- 155

Query: 68  RFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               A  PL    L + PTRELA+Q+  +++ + A   +   +  GG  +  +   L   
Sbjct: 156 ----AEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRSQALALAGR 211

Query: 125 AHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP 177
            H+VV TPGRL DHI+  G      +  ++ VVLDEAD +L  G      D+E  L + P
Sbjct: 212 PHVVVATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALP 271

Query: 178 --KKRRMLMFSATISP---AITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALS 229
              +R+ L+F+AT++P   A+  + +   K  V V   S   Q +    +    + V L+
Sbjct: 272 PSSERQTLLFTATVTPEVRALKNMPRAANKPPVFVTEISSESQGTVPPTLKQTYLKVPLT 331

Query: 230 DRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            R+  +  +L   G   K AI+FC+   +     ++L     +V +L   L Q ER+  L
Sbjct: 332 HREAFLHVLLSTEGNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANL 391

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R   AR+ +ATDVA+RG+D+P + LV++ ++  NP++ +HR GRT RAGR G SV +
Sbjct: 392 ARFRASAARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRTARAGRSGESVTL 451

Query: 348 IPQ 350
           + Q
Sbjct: 452 VGQ 454


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 188/379 (49%), Gaps = 13/379 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   + +Q       +  +D++  A+TGSGKT+AF L  A   +   
Sbjct: 124 FPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAF-LLPAIVHINAQ 182

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+ L +APTRELAVQ   E    + ++  +   C+ GG     + R L NG 
Sbjct: 183 PYLQRGDGPIVLVLAPTRELAVQTQEECN-RFGRSSRIRNTCVYGGTPRGPQARALANGV 241

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I       R+ L++
Sbjct: 242 EICIATPGRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVRPDRQTLLW 301

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT    I  LA++  +++ V +N+ S + +  H+   Y  ++     +D     + R  
Sbjct: 302 SATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQLLERIM 361

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+ +    T++L    +  +++ G+  Q+ER   LQ  + G++ + IATD
Sbjct: 362 DGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIATD 421

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VA+RG+D+ DL  VI+ +     E+ +HR GRTGRAG KG +      +  + A+ L   
Sbjct: 422 VASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAKDLIGV 481

Query: 360 FREANVSVVWEPAPSVEAI 378
            REA  +V     P +E I
Sbjct: 482 LREAEQAV----PPELEKI 496


>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 397

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|218899452|ref|YP_002447863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228902809|ref|ZP_04066954.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
 gi|228910119|ref|ZP_04073939.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228967351|ref|ZP_04128386.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218540620|gb|ACK93014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228792386|gb|EEM39953.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228849636|gb|EEM94470.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228856818|gb|EEN01333.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
          Length = 436

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|290991785|ref|XP_002678515.1| DEAD/DEAH box helicase family protein [Naegleria gruberi]
 gi|284092128|gb|EFC45771.1| DEAD/DEAH box helicase family protein [Naegleria gruberi]
          Length = 478

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 186/349 (53%), Gaps = 24/349 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   +   L  KD+L  A+TGSGKT+AF L     L      F P +    + ++P
Sbjct: 1   MTPIQARSIPIALAGKDLLAQAKTGSGKTLAFLLPCLELLY--RAEFKPRNGTGVIILSP 58

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RG 141
           TRELA+Q     + L         + IGG S H+E   L  G +IV+ TPGRL DH+   
Sbjct: 59  TRELAIQTYAVCKSLMTFMKQTHCLLIGGQSKHQEGEKLVKGCNIVIATPGRLLDHLLHT 118

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISPAITTLAK-N 199
           KG   S+L ++VLDEAD MLD GF ++++ I+   P K R+ L+FSAT +  +  +A+ +
Sbjct: 119 KGFVYSNLISLVLDEADRMLDDGFEEELKAIVKLLPTKGRQTLLFSATQTTKVADIARVS 178

Query: 200 YQKDAVRVNIASENR-----------QHSDIDYRAVLVALSDRDNAIVNILRYHGA---- 244
            ++D V V I   N+             ++++   V+V  S++   + + L+   A    
Sbjct: 179 IKRDPVFVGIEDLNKITKTEETEEYSTATNLEQGYVVVPASEKFVLLYSFLKKTMATTPG 238

Query: 245 ---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF S+ A+V  ++++L      V  L G++ Q +R+ A        + V ++T
Sbjct: 239 KKGKKIIVFFSSCAAVKYYSELLNYINVSVTPLHGKMKQNKRTQAFMNFCGAESGVLLST 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           DVAARG+D+P ++ ++  +    P+  +HR GRT RAG  G + +F++P
Sbjct: 299 DVAARGLDIPKVDWIVQYDPPEAPKEYIHRVGRTARAGNVGRALLFLLP 347


>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 397

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQKWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 181/347 (52%), Gaps = 8/347 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF + +   +  +     
Sbjct: 148 ILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHI-KDQPPLE 206

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVV 129
               P+A+ + PTRELA+Q+ RE +  + K   +  VC+ GG  +  +  +L+ GA I+V
Sbjct: 207 REEGPIAIVMTPTRELAIQIHRECKK-FCKPNNLRCVCVYGGTGISEQIAELKRGAEIIV 265

Query: 130 GTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            TPGR+ D +    G+  N      +VLDEAD M D+GF   +  I+D     R+ +MFS
Sbjct: 266 CTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIIDCIRPDRQTVMFS 325

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAK 245
           AT    +  LA+      + + +   +   SD++   V++   D+    +  +  Y    
Sbjct: 326 ATFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNVVVIEEDDKFLKLLELLGLYQEQG 385

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF   + S     K L +  +  ++L G + Q +R + +   ++G  ++ IAT VAA
Sbjct: 386 SVLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLMIATSVAA 445

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           RG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +  F+ P+ 
Sbjct: 446 RGLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQ 492


>gi|228923037|ref|ZP_04086330.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836670|gb|EEM82018.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 436

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|294886929|ref|XP_002771924.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239875724|gb|EER03740.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 582

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 192/370 (51%), Gaps = 14/370 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +     L+A   RF 
Sbjct: 97  LKEALTTCNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALELLVAT--RFQ 154

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIV 128
           P +    + I+PTRELA+Q+    + L   T +     + +GGV+   E   L  G +I+
Sbjct: 155 PKNGTGVMVISPTRELAMQIYDVCKRLVDSTKLSQTYGIVMGGVNRKNEADKLSRGINII 214

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH++  +G   ++L ++V+DEAD +L +GF +D+  IL   PKKR+  +FSA
Sbjct: 215 VATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKKRQTSLFSA 274

Query: 188 TISPAITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +  +  LA+   K  + V     +        S +    V+V   DR   +   L+ +
Sbjct: 275 TQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRLLFTFLKKN 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+++ G+  Q  R           + + + TD
Sbjct: 335 QKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQMESGILLCTD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P ++ ++  +   +P+  +HR GRT R   G     +F++P+ +     R  
Sbjct: 395 VAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEELG--FLRYL 452

Query: 361 REANVSVVWE 370
           R++ V+ + E
Sbjct: 453 RKSGVTTLNE 462


>gi|149053067|gb|EDM04884.1| eukaryotic translation initiation factor 4A1, isoform CRA_a [Rattus
           norvegicus]
          Length = 393

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|141795456|gb|AAI39522.1| LOC562123 protein [Danio rerio]
          Length = 584

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 190/362 (52%), Gaps = 16/362 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+ + L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L +++
Sbjct: 178 PTVLEKNLKVAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSE 236

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SP S P  L + PTRELA+Q+  +  E +     +  A+ +GG+ +  +   L++   
Sbjct: 237 SASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIK 295

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ S
Sbjct: 296 IVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTS 355

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YH 242
           ATI      LA+    D V + I  +N+  +++    + V    +   +  IL     Y 
Sbjct: 356 ATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLYQ 415

Query: 243 GAKNAIVFCSTRASV--SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 V C   A +      KV++      VA+  +  Q ER+  ++ + +G+  V I+
Sbjct: 416 PPVVVFVDCKLGADLLCEAVQKVMS---LNTVAIHSDKMQWERNKIVKGLLEGQFDVVIS 472

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++      M    +RLF
Sbjct: 473 TGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITF----MNNNNKRLF 528

Query: 361 RE 362
            E
Sbjct: 529 LE 530


>gi|326942068|gb|AEA17964.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 411

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|323454961|gb|EGB10830.1| hypothetical protein AURANDRAFT_21789 [Aureococcus anophagefferens]
          Length = 510

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 192/390 (49%), Gaps = 15/390 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL E+     T +Q   +   L  +D++  A TGSGKTVAF + L    L E +R SP 
Sbjct: 78  DALGEKRITRPTPIQVQGMPVALAGRDMIGIAFTGSGKTVAFSVPLIVRAL-EAERRSPL 136

Query: 73  SA---PLALAIAPTRELAVQVGRELEWLYAKTGVVV---------AVCIGGVSVHRERRD 120
            A   P+ L + P+RELA Q    +++  A+              A CIGG     +  D
Sbjct: 137 RAGEGPVGLVLCPSRELARQTWEVVDFFMARLRGAGGRRGDVLRSACCIGGEPKGPQLDD 196

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+  G H VV TPGRL D +  + + +       LDE D MLDLGF +++  +++    +
Sbjct: 197 LRRRGVHAVVATPGRLKDFLESRQVRLGRCSYFCLDEGDRMLDLGFDEEVHKVMNHFEAQ 256

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+       A+     +V VN++     + D+      V L  R   ++  L
Sbjct: 257 RQTLLFSATMPQKFQDFARGALVRSVLVNVSRAGAANLDVIQEVEYVKLEARIVYLLECL 316

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   A   ++FC  +  V    + L     + V++ G   Q ER+ A+   + G   V +
Sbjct: 317 Q-KTAPPVVIFCERKGDVDDIHEYLLLKGVEAVSIHGGKDQGERNGAIDAFKRGAKDVLV 375

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I + ++  +   
Sbjct: 376 ATDVAAKGLDFPDIQHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFINKTVEPSSLLD 435

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
            +   V       P ++ + E DA R+  D
Sbjct: 436 LKHLLVEAKQRVPPVLQVLDEPDANRLAGD 465


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 170/332 (51%), Gaps = 5/332 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D +  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 275 YTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKE-LEPGEGPIAVI 333

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +      G+      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 334 VCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 393

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  ++  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 394 KKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 453

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIVFCSTRAS 256
              D +RV        + DI  + V V  S +D        ++ +  A + +VF + +A+
Sbjct: 454 ILVDPIRVVQGDIGEANEDIT-QIVEVLQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKAN 512

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L +  + +  L G++ Q ER+  +   +     V +ATDVAARG+D+P +  V
Sbjct: 513 CEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTV 572

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 573 VNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 604


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 179/347 (51%), Gaps = 5/347 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L + G+   T +Q   +   +  +D++  A+TGSGKT+AF + +   +L +        
Sbjct: 251 CLKKHGFEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHILDQRP-LEDTE 309

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P+ + + PTRELA+Q+ +E +       + V    GG  +  +  +L+ GA I++ TPG
Sbjct: 310 GPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAELKRGAEIIICTPG 369

Query: 134 RLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           R+ D +    G+  N+     +VLDEAD M D+GF   +  I++S    R+ +MFSAT  
Sbjct: 370 RMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHIVNSVRPDRQTVMFSATFP 429

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIV 249
             +  LA+   +  + V +   +   SD++   +++    +   ++ +L  Y    + +V
Sbjct: 430 RNMEALARKVLQKPIEVQVGGRSVVCSDVEQHVIVLEEEQKFFKLLELLGNYQEKGSVLV 489

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +       K L +  +  ++L G + Q +R + +   + G  R+ +AT VAARG+D
Sbjct: 490 FVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSGNIRLLVATSVAARGLD 549

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  L LVI+ +  ++ E+ +HR GRTGRAG KG +   I ++  R A
Sbjct: 550 VKQLILVINYDCPNHYEDYVHRVGRTGRAGNKGYAYTFITEDQGRYA 596


>gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens]
 gi|114676212|ref|XP_512518.2| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan
           troglodytes]
 gi|74753527|sp|Q9Y6V7|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens]
 gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens]
 gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo
           sapiens]
 gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct]
          Length = 483

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +       +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
          Length = 538

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 197/365 (53%), Gaps = 29/365 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + ++LS       T++Q++ +   L+ KD +  ++TGSGKT+AF + +       
Sbjct: 114 NVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFAVPILQKW--A 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   L    
Sbjct: 172 EDPF----GVFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQRP 227

Query: 126 HIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP- 177
           H+++ TPGRL DHIR  G    + ++ ++ VV+DEAD +L  G      D+E  L + P 
Sbjct: 228 HVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLSALPP 287

Query: 178 -KKRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQHSDI----DYRAVLVAL 228
             +R+ L+F+AT++P   A+ ++ +   +  + V  I +EN  H+ I        + V +
Sbjct: 288 SSERQTLLFTATVTPEVRALKSMPRPANRPPIHVTEIGTEN--HAPIPPTLKQTYLQVPM 345

Query: 229 SDRDNAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           + R+ A +++L     +  K AI+FC+   +     ++L     +V +L   L Q ER+ 
Sbjct: 346 THRE-AFLHVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQSERTA 404

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R   AR+ +ATDVA+RG+D+P++ LVI+ ++  NP++ +HR GRT RAGR G SV
Sbjct: 405 NLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESV 464

Query: 346 FVIPQ 350
            ++ Q
Sbjct: 465 TLVGQ 469


>gi|126134271|ref|XP_001383660.1| DEAD box RNA helicase [Scheffersomyces stipitis CBS 6054]
 gi|146286100|sp|A3LQW7|DBP2_PICST RecName: Full=ATP-dependent RNA helicase DBP2
 gi|126095809|gb|ABN65631.1| DEAD box RNA helicase [Scheffersomyces stipitis CBS 6054]
          Length = 530

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 5/329 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   +  +G+ + T++Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 104 FPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQ- 162

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L +APTRELAVQ+ +E     + + +      GG    ++ RDL  G  
Sbjct: 163 PLLSPGDGPVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVE 222

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 223 IVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 282

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  LA++Y +D ++V I S      H+      V+     RD  + ++      
Sbjct: 283 ATWPKEVQNLARDYLQDPIQVRIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTE 342

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           K +  ++F ST+ +    T  L    +  +A+ G+  Q ER   L+  + G++ + +ATD
Sbjct: 343 KESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATD 402

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHR 331
           VAARGID+  +  VI+ ++  N E+ +HR
Sbjct: 403 VAARGIDVKGINFVINFDMPGNIEDYVHR 431


>gi|156103037|ref|XP_001617211.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148806085|gb|EDL47484.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 923

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 187/379 (49%), Gaps = 39/379 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS----- 60
           N+ +++   + +  Y   T +Q+  L+  + + D++  AQTGSGKT  + L + +     
Sbjct: 346 NLHEILLSNIKKVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPIINHMLLN 405

Query: 61  -----TLLAENDR-----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                T   EN +     ++    P+ L +APTRELAVQ+  + +    +TG+   V  G
Sbjct: 406 DPPKHTFYEENQKSSSYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKPVVLYG 465

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G ++  +  +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I 
Sbjct: 466 GSNIKTQLSNLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIR 525

Query: 171 FIL----------DS--SPK------------KRRMLMFSATISPAITTLAKNYQKDAVR 206
            I+          DS  +P             KR+ +MFSAT    I  LAK Y  +   
Sbjct: 526 SIMYDYDMPGNENDSRMNPNKMEYKRYTNDVVKRQTIMFSATFRKEIQVLAKEYLFNYTF 585

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           + +      +  I    + +   ++ N ++ +L  +     I+F  T+       + L  
Sbjct: 586 LLVGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADIIERFLNN 645

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
                V + G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN +
Sbjct: 646 QKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINFDLPSNID 705

Query: 327 NLLHRSGRTGRAGRKGMSV 345
           + +HR GRTGRAG  G++ 
Sbjct: 706 DYIHRIGRTGRAGNIGIAT 724


>gi|302804899|ref|XP_002984201.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
 gi|300148050|gb|EFJ14711.1| hypothetical protein SELMODRAFT_119748 [Selaginella moellendorffii]
          Length = 521

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 200/391 (51%), Gaps = 58/391 (14%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRF--- 69
           ALS  G+   T +Q+A +     + KDV+ +A+TGSGKT+AFG+ +   LL E D+    
Sbjct: 13  ALSILGFTTPTPIQKACIPAAAHKGKDVIGAAETGSGKTLAFGIPILQRLLDERDKLLRQ 72

Query: 70  --SPASAPL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
               + +PL AL + PTRELA+QV  +     AK T + VA  +GG+S  ++ R L+   
Sbjct: 73  NNVASDSPLRALIVTPTRELALQVICDHIRAVAKFTDIKVAPIVGGISTQKQERLLKRRP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILD-------- 174
            IVVGTPGRL + +     ++  L+ +   +LDEAD M++ G   ++E I+D        
Sbjct: 133 AIVVGTPGRLWELMSSGESHLVQLQEISFFILDEADRMIEKGHFQELESIIDLLPKHGES 192

Query: 175 ------------SSPKKRRMLMFSATIS--PAITT-LAKNY------------------- 200
                       S+ K+R+ L+FSAT++  P     L K+Y                   
Sbjct: 193 REDLDPADNVFLSAKKRRQTLVFSATLTLPPDFKKKLKKSYGARKKSEQHSLSLLSERAG 252

Query: 201 -QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
               A  V++ S+N     +    +     ++D  +  +L+ HG    IVFC++ A++ R
Sbjct: 253 LSDTAEVVDLTSKNVVAEKLTESVIECTDEEKDAYLYYVLKVHGCGRTIVFCTSIAALRR 312

Query: 260 FTKVLAEHLFQVVA--LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +L   L +V A  L  +L Q++R   +   R     V +ATDVAARG+D+P +  VI
Sbjct: 313 LAAIL--RLLEVPAWPLHAQLQQRQRLKTMDRFRASTDGVLVATDVAARGLDIPGVRTVI 370

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           H +L  + E  +HRSGRT RA + G S+ +I
Sbjct: 371 HYQLPHSAEMYVHRSGRTARADKDGCSIALI 401


>gi|38327634|ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens]
 gi|20532388|sp|Q9NVP1|DDX18_HUMAN RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18; AltName: Full=Myc-regulated DEAD box
           protein; Short=MrDb
 gi|119615599|gb|EAW95193.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
 gi|119615600|gb|EAW95194.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
          Length = 670

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 370 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 429

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 430 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 489

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|294948517|ref|XP_002785780.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239899848|gb|EER17576.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 579

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 190/368 (51%), Gaps = 12/368 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +     L+A   RF 
Sbjct: 96  LKEALTACNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALELLVAT--RFQ 153

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +    + I+PTRELA+Q+    + +         + +GGV+   E   L  G +I+V 
Sbjct: 154 PKNGTGVMVISPTRELAMQIYDVCKRVVVVLSQTYGIVMGGVNRKNEADKLSRGINIIVA 213

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH++  +G   ++L ++V+DEAD +L +GF +D+  IL   PKKR+  +FSAT 
Sbjct: 214 TPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKKRQTSLFSATQ 273

Query: 190 SPAITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           +  +  LA+   K  + V     +        S +    V+V   DR   +   L+ +  
Sbjct: 274 TQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRLLFTFLKKNQK 333

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF S+  SV    ++L      V+++ G+  Q  R           + + + TDVA
Sbjct: 334 KKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQMESGILLCTDVA 393

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFRE 362
           ARG+D+P ++ ++  +   +P+  +HR GRT R   G     +F++P+ +     R  R+
Sbjct: 394 ARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEELG--FLRYLRK 451

Query: 363 ANVSVVWE 370
           + V+ + E
Sbjct: 452 SGVTTLNE 459


>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
 gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
          Length = 568

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 174/353 (49%), Gaps = 13/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P+ I  +L  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L +
Sbjct: 133 KFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPLLMFCLEQ 192

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  F     P  L + P+RELA Q    + +            +   +CIGG SV  +
Sbjct: 193 EKRLPFVQNEGPYGLVVCPSRELAKQTFEIVSFFVRALEEAGYPSLRGCLCIGGTSVREQ 252

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ G H++V TPGRL D +  K +N+   + + LDEAD M+D+GF +D+  I     
Sbjct: 253 LEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLCLDEADRMIDMGFEEDVRTIFSFFK 312

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++     + VN+        D+      V    ++  IV+
Sbjct: 313 GQRQTLLFSATMPKKIQNFARSALVKPITVNVGRAGAASLDVVQE---VEYVKQEAKIVH 369

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L      A   ++F   +  V    + L     + VA+ G   Q+ERS A+   R    
Sbjct: 370 LLETLQKTAPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRAVDAFRRAEK 429

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GR G++   I
Sbjct: 430 DVLVATDVASKGLDFENIQHVINYDMPEDIENYVHRIGRTGRSGRMGIATTFI 482


>gi|309361517|emb|CAP29330.2| hypothetical protein CBG_09775 [Caenorhabditis briggsae AF16]
          Length = 820

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 180/345 (52%), Gaps = 5/345 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+ L  A     +   
Sbjct: 278 KLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAY-LWPAIVHTMDQPD 336

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
                 P+A+ + PTRELA+QV +E +       + V    GG S   +  +LQN GA +
Sbjct: 337 LKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQNEGAEM 396

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D ++ +  N      +V DEAD M D+GF   ++ I D     R+ LMFSA
Sbjct: 397 VVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSA 456

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAK 245
           T    +  LA++   D VR+        ++DI+ +  ++   D      I N++ +    
Sbjct: 457 TFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLVEFASLG 516

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F + +       K L    F +V L G++ Q ER+  L   R  ++++ +ATDVAA
Sbjct: 517 KVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAA 575

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+ ++  V++ +++ + +  +HR GRTGRAG +G +  ++ +
Sbjct: 576 RGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTE 620


>gi|212546709|ref|XP_002153508.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210065028|gb|EEA19123.1| eukaryotic translation initiation factor 4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 397

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    +           A  AL
Sbjct: 43  GFERPSAIQQRAIMPVIKGNDVIAQAQSGTGKTATFSISALQKIDGS------LKACQAL 96

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG +V  + + LQ+G  +VVGTPGR+ D 
Sbjct: 97  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDM 156

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   ++K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 157 IQRRVLRTDNIKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 216

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 217 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 276

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 277 DWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 336

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 337 NYDLPANRENYIH 349


>gi|148539566|ref|NP_001091916.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
 gi|126722145|emb|CAM57102.1| eukaryotic initiation factor 4a [Strongylocentrotus purpuratus]
          Length = 426

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 187/355 (52%), Gaps = 7/355 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++   L  E  +        AL
Sbjct: 72  GFEKPSAIQQRAILPCCEGKDVIAQAQSGTGKTATFAISILQQLNVEEKQCQ------AL 125

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     V    CIGG +V  +   L  G  ++VGTPGR+ D 
Sbjct: 126 VLAPTRELAQQIHKVIVALGDYLEVKCHPCIGGTNVRDDMNLLSEGVQVIVGTPGRVFDM 185

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++ K L+   +   VLDEADEML  GF+D I  +    P + ++++ SAT+   +  + K
Sbjct: 186 LKRKVLSPFKICMFVLDEADEMLSRGFKDQIYDVFSWLPSEVQVVLLSATMPVDVLEVTK 245

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  E      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 246 KFMRDPIRILVKKEELSLDGIKQFYIAVEKEEWKLDTLCDLYETLTITQAVIFCNTRRKV 305

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + + E  F V  +  ++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 306 DWLCQKMHERDFTVSIMHRDMDQKERDKIMKEFRTGSSRVLICTDLLARGIDVQQVSLVI 365

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +L +N EN +HR GR GR GRKG+++  +P   +R    + +  N  V   P+
Sbjct: 366 NYDLPTNRENYIHRIGRGGRFGRKGVAINFVPDEDKRNLRDIQQFYNTQVDEMPS 420


>gi|121705144|ref|XP_001270835.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
 gi|134034143|sp|A1CJT5|IF4A_ASPCL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119398981|gb|EAW09409.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 398

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 167/314 (53%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++          +  P   A  A
Sbjct: 44  GFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQ-------KIDPNLKACQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + LQ+G  +VVGTPGR+ D
Sbjct: 97  LILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 337 INYDLPANRENYIH 350


>gi|328771868|gb|EGF81907.1| hypothetical protein BATDEDRAFT_10092 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 529

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 198/365 (54%), Gaps = 37/365 (10%)

Query: 13  EALSERGYVNLTSVQ-EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
           + L + G+   T +Q +++ N  +R KD++ +A+TGSGKT+AFGL +   L  +  + +P
Sbjct: 161 QTLHKLGFSCPTDIQAKSLENTLVRHKDIIGAAETGSGKTLAFGLPILHHLAIQLQK-NP 219

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +A + L I PTRELA+QV   L+   A     +   +GG+S+ ++RR +    HI+VGT
Sbjct: 220 NTACIGLIITPTRELAIQVSDHLKRAGAAITHKITPIVGGMSLQKQRRLIATKPHIIVGT 279

Query: 132 PGRLCDHIR--GKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFIL---------DSSPKK 179
           PGRL + I+   + L+ + H   +V+DEAD ML+ G   D++ IL         ++S  K
Sbjct: 280 PGRLWELIQEDPELLDMLKHTTYLVIDEADRMLEAGHFKDLDSILGCISVCNTDNASQIK 339

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----------- 228
           RR ++FSAT+           + DA++       ++H+ I     + A            
Sbjct: 340 RRTMVFSATM----------LEDDAIKQKATLNFKKHNKIKSSLFITAKGLLESKINCLK 389

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +++D  +  +L  + AK  IVF ++  ++ R   +L+    QV  L  E+ Q++R   L 
Sbjct: 390 TEKDTMLYYVLCRYTAKT-IVFVNSIDAIRRLVPILSYLGVQVFGLHAEMQQRQRLKNLD 448

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FV 347
              +    V IA+DVA+RG+D+P ++ VIH +L    +  +HRSGRT RA  +G+SV  V
Sbjct: 449 RFVETPNGVLIASDVASRGLDIPKVDHVIHYQLPRAADIYVHRSGRTARANAEGVSVALV 508

Query: 348 IPQNM 352
            P+ +
Sbjct: 509 CPEEL 513


>gi|327260241|ref|XP_003214943.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Anolis
           carolinensis]
          Length = 666

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 202/360 (56%), Gaps = 14/360 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++  +I E     ++E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + 
Sbjct: 174 FTSLKSLISENTLKGITEMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF--LIP 231

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  L    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 232 AIELIYKLKFMPRNGTGVLILSPTRELAMQTYGVLKELMTHHVHTYGLVMGGSNRSAEAQ 291

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +V+DEAD +L++GF ++++ I+   PK
Sbjct: 292 RLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPK 351

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LAK + +K+ + V +  +N++ + ++   +  +V  S++   +
Sbjct: 352 RRQTMLFSATQTRKVEDLAKISLKKEPLYVGV-DDNKETATVEGLEQGYVVCPSEKRFLL 410

Query: 236 V-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 411 LFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAD 470

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 471 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 530


>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
          Length = 457

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 179/343 (52%), Gaps = 19/343 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G  N T +Q+  +   L  +D +  A+TGSGKT+AF L +   L  +           AL
Sbjct: 24  GLKNPTLIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPILQKLCED------PYGIFAL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +   +     +   V +GG+ +  +  +L    HIVV TPGRL DH
Sbjct: 78  VLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQGLELSKRPHIVVATPGRLADH 137

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +      ++  +K +VLDEAD +L   F   ++ I  + PK++++L+FSAT++ A   L 
Sbjct: 138 LDSCDTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAAVPKQKQVLLFSATMTDA---LD 194

Query: 198 KNYQKDAVRVNIASENRQHS-----DIDYRAVLVALSDRDNAIVNILRYHGAKNA----I 248
           K  Q  + +V I  E          ++D R VL      D+ +V ++R   A N     +
Sbjct: 195 KVKQIASSKVFIWEEEDDAGIATVRELDQRYVLCPKDVLDSFLVEVIRTFRATNKNGSIM 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T       + +L +  F  +AL   + Q+ER  AL   +    ++ IATDVAARG+
Sbjct: 255 IFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFKSNHVQILIATDVAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           D+P +ELV++  + + P+  +HR GRT RAGR GM++ +I  N
Sbjct: 315 DIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPN 357


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 193/402 (48%), Gaps = 48/402 (11%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL--------- 56
           + P+ + E +   G+   T +Q       L  +D++  + TGSGKT+AF L         
Sbjct: 107 SFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIVHINAQ 166

Query: 57  -----ALASTLLAENDRFS---------------------------PASAPLALAIAPTR 84
                +L + L   +D  S                           P   P+ L IAPTR
Sbjct: 167 VRILQSLFTKLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPIVLMIAPTR 226

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           ELAVQ+  E     A + +      GGV    +  DL+ G  I + TPGR+ D +     
Sbjct: 227 ELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRRGVEICICTPGRMIDMLSMGKT 286

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA 204
           N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+SAT    I  LA ++  D 
Sbjct: 287 NLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALANDFLTDF 346

Query: 205 VRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR--YHGAKNAIVFCSTRASVSRF 260
           ++V + S +   ++   + ++  + D  + +++ + LR  Y G +  I+FC T+      
Sbjct: 347 IQVTVGSLDLT-ANKRIKQIVEVMDDHQKYSSLQDHLRDIYEGGR-IIIFCETKRGADEL 404

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           ++ L    +   A+ G  SQ+ER   L+  +DGR ++ +ATDVA+RG+D+ D+  V++ +
Sbjct: 405 SRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVVNFD 464

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFR 361
           +  N E+ +HR GRT RAG KG S+ F    N  R A  L +
Sbjct: 465 MPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLVK 506


>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
          Length = 814

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 179/343 (52%), Gaps = 5/343 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+ L  A     +   
Sbjct: 272 KLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAY-LWPAIVHTMDQPD 330

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
                 P+A+ + PTRELA+QV +E +       + V    GG S   +  +LQN GA +
Sbjct: 331 LKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQNEGAEM 390

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D ++ +  N      +V DEAD M D+GF   ++ I D     R+ LMFSA
Sbjct: 391 VVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLMFSA 450

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGAK 245
           T    +  LA++   D VR+        ++DI+ +  ++   D      I N++ +    
Sbjct: 451 TFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLVEFASLG 510

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F + +       K L    F +V L G++ Q ER+  L   R  ++++ +ATDVAA
Sbjct: 511 KVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRK-KSQILVATDVAA 569

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RG+D+ ++  V++ +++ + +  +HR GRTGRAG +G +  ++
Sbjct: 570 RGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLV 612


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 174/335 (51%), Gaps = 4/335 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           +I E + + GY   T +Q+  +      +D++  AQTGSGKT +F L + S LL +    
Sbjct: 141 IIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPIISKLLDDPQDL 200

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P A+ ++PTRELA+Q+  E      +T + + +  GG S   +   +  G+H+++
Sbjct: 201 E-FGRPQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQNDCITKGSHVLI 259

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSA 187
            T GRL D +    +     + VVLDEAD MLD+GF + +  ++   +   + + LMFSA
Sbjct: 260 ATLGRLLDFVDRTFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTMRPQHQTLMFSA 319

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I  LA  +  + V V I       SD+      V+  ++   ++ ILR   A   
Sbjct: 320 TFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAKLMEILREE-ADGT 378

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+RG
Sbjct: 379 IVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRG 438

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +D+ +++ VI+ ++  N ++ +HR GRTGR G  G
Sbjct: 439 LDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNG 473


>gi|221124764|ref|XP_002163050.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           [Hydra magnipapillata]
          Length = 396

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 202/416 (48%), Gaps = 62/416 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E+    G+ + T +Q   +   L  KD++  A+TGSGKT AF L +  TLL   
Sbjct: 16  VTDVLCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQTLLDNP 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL I PTRELA Q+  + E L +  G+  AV +GGV +  +   L    H
Sbjct: 76  QRL------YALVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLALTKKPH 129

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL DH+   KG ++  LK +++DEAD +L++ F +++  IL   PK+R   +F
Sbjct: 130 IVIATPGRLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKERSTYLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   K+ V+V ++                                   
Sbjct: 190 SATMTKKVAKLQRASLKNPVKVEVS----------------------------------- 214

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
                       ++F  V  E L Q         + +R  AL   +     + IATDVA+
Sbjct: 215 ------------TKFQTV--EKLQQSYIFIPNKFKAKRLGALNKYKSKSRTILIATDVAS 260

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF-R 361
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q    + +R E+L  +
Sbjct: 261 RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIGK 320

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +  +  + E    +   R  +AQR  +  + L  +   ++K +D+   ++  EKI+
Sbjct: 321 KLPLHPMVEEEVMLLVERVTEAQRYAK--MELKQVHETKRKTIDIDDEENSTEKIS 374


>gi|256371104|ref|YP_003108928.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007688|gb|ACU53255.1| DEAD/DEAH box helicase domain protein [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 467

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/326 (35%), Positives = 178/326 (54%), Gaps = 8/326 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +    + +G +  T +Q A L   L  +DVL SA TG+GKT+AFGLA+    LA 
Sbjct: 22  GVPEPLVAVATAQGLLEPTPIQRAALPDALAGRDVLGSAPTGTGKTLAFGLAV----LAR 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A  P AL +APTRELA+Q+   L+         VAV  GGV   R+ + L+ G 
Sbjct: 78  VSASARAKHPRALILAPTRELAMQIADALDAFARAERRSVAVFYGGVGYGRQLQQLRRGV 137

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL D +R +G +++SH++ VV+DEAD M D+GF  ++  ++ ++  +R+ ++
Sbjct: 138 DVVVATPGRLAD-LRERGDVDLSHVEVVVVDEADRMADMGFLPEVRRLVQATSSERQTML 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL +    D VR  +   + +  ++ +    V  S+R    V       A
Sbjct: 197 FSATFEGPVETLVRELCHDPVRHVVTRPDDEQGEVGHHFWNVDPSERLQ--VTAAAVRAA 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC TR    R  + L        A+ G+L+Q++R  AL+  R GR    +ATDVA
Sbjct: 255 GPAVVFCRTRRGADRIAERLRGEGLATAAIHGDLNQRQRERALEGFRAGRIDALVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLH 330
           ARGI + D+ LVIH +      + +H
Sbjct: 315 ARGIHVDDVPLVIHFDPPERTTDYVH 340


>gi|303275900|ref|XP_003057244.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461596|gb|EEH58889.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1116

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 194/370 (52%), Gaps = 24/370 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA-L 78
           + + TSVQ+  L P ++  D L  A+TGSGKTVAF   L +  L      +P +  ++ L
Sbjct: 117 FTHATSVQDQTLPPIMKGLDTLARAKTGSGKTVAF--LLPTIELLHRTGPAPGNGSVSCL 174

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCD 137
            ++PTRELA Q+  E + L A       V  GG +++ ER  +  G    +V TPGRL D
Sbjct: 175 VLSPTRELASQIHEESKSLLAFHNFKSHVVFGGTNINSERGRMNGGRCDFLVATPGRLID 234

Query: 138 HIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           H    GL    ++LK +VLDEAD++L++GF+  ++ IL   P++R+ L+FSAT+   +  
Sbjct: 235 HFETSGLQPRCANLKVLVLDEADQLLEMGFKPAVDRILSFIPRERQTLLFSATVPQQVRN 294

Query: 196 LAKNYQKDA-VRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAK--NAIVF 250
           +A N  +     V+   E    +++  +  L    L D    +V ++  H  +  N  V 
Sbjct: 295 IAANALRPGYAYVDCVGEEDSATNLQVKQWLTIAPLDDHLILLVQLINMHQQQEPNHKVM 354

Query: 251 CSTRASVSRFTKVLAEHLFQ-----VVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           C      +R T++ AE LF+     V  +    SQ  R+ A    R  +  V +++DV A
Sbjct: 355 CFF--PTARSTQLAAE-LFEALGKPVTEIHSRKSQGHRTKAADQFRASKCAVMMSSDVTA 411

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D PD+ LVI   L S+ E  +HR GRT RAG+ G  + ++  + +  A +L R+  +
Sbjct: 412 RGMDFPDVTLVIQVGLPSSKEQYIHRLGRTARAGKTGEGLLLLAPHEEFFARQL-RDLPI 470

Query: 366 SVVWEPAPSV 375
           +    PAP+ 
Sbjct: 471 T----PAPAT 476


>gi|332252169|ref|XP_003275228.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Nomascus leucogenys]
          Length = 671

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 193 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 250

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 251 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 310

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 311 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 370

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +  K  
Sbjct: 371 KVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 429

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG
Sbjct: 430 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARG 489

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 536


>gi|12654791|gb|AAH01238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|13097183|gb|AAH03360.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
          Length = 670

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 370 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 429

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 430 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 489

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 181/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 23  GLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNP 82

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ GA +V+ TP
Sbjct: 83  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATP 142

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 143 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E    + +  R    A  ++   ++ +L        +V
Sbjct: 203 SHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRTMV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 263 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 323 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 358


>gi|228954569|ref|ZP_04116594.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081545|ref|ZP_04214043.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|229180563|ref|ZP_04307905.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|229192495|ref|ZP_04319458.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228591072|gb|EEK48928.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228602987|gb|EEK60466.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|228701750|gb|EEL54238.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|228805226|gb|EEM51820.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 436

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 200/401 (49%), Gaps = 39/401 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAST 61
            P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F L     A A  
Sbjct: 284 FPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLVHAAAQP 343

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLY---------AKTGVVVAVC 108
            LA+         P+ L +APTRELA+Q+  E     E L          A T    A  
Sbjct: 344 PLAQ------GQGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRADTKFRTACV 397

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+GF   
Sbjct: 398 YGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQ 457

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQ-HSDIDYRAVLV 226
           +  I       R+ L++SAT    +  LA  + +   V++ +   + Q ++++  R  +V
Sbjct: 458 VRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVV 517

Query: 227 ALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           + +   + ++++L+     +  ++FC T+    +  + L     + +A+ G+  Q+ER  
Sbjct: 518 SSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDR 577

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG KG ++
Sbjct: 578 ILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTAI 637

Query: 346 ------FVIPQ--NMQRRAERLFREANVSVVWEPAPSVEAI 378
                 F  P+   M R+   + R    SV  EP   +E I
Sbjct: 638 SFFQYDFYSPEKVTMARKICEVMR----SVGQEPPADLEKI 674


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 200/401 (49%), Gaps = 39/401 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAST 61
            P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F L     A A  
Sbjct: 284 FPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLVHAAAQP 343

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLY---------AKTGVVVAVC 108
            LA+         P+ L +APTRELA+Q+  E     E L          A T    A  
Sbjct: 344 PLAQ------GQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTACV 397

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+GF   
Sbjct: 398 YGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEPQ 457

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENRQ-HSDIDYRAVLV 226
           +  I       R+ L++SAT    +  LA  + +   V++ +   + Q ++++  R  +V
Sbjct: 458 VRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEVV 517

Query: 227 ALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           + +   + ++++L+     +  ++FC T+    +  + L     + +A+ G+  Q+ER  
Sbjct: 518 SSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERDR 577

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG KG ++
Sbjct: 578 ILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTAI 637

Query: 346 ------FVIPQ--NMQRRAERLFREANVSVVWEPAPSVEAI 378
                 F  P+   M R+   + R    SV  EP   +E I
Sbjct: 638 SFFQYDFYSPEKVTMARKICEVMR----SVGQEPPADLEKI 674


>gi|323143171|ref|ZP_08077868.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
 gi|322417058|gb|EFY07695.1| ATP-dependent RNA helicase SrmB [Succinatimonas hippei YIT 12066]
          Length = 455

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/390 (32%), Positives = 195/390 (50%), Gaps = 25/390 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-AL 58
           M  F+ ++P+ I      +G+   T+VQ  ++   L   D+L  A TG+GK+ AF L AL
Sbjct: 1   MSFFDLDLPEEIVACALAQGWQQPTAVQTLVIPKALEGHDILGGAPTGTGKSAAFLLPAL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA---KTGVVVAVCIGGVSVH 115
           A  L  EN           L + PTRELAVQV      L +         A  IGG    
Sbjct: 61  ARLLTLEN-----TLGVKVLVLEPTRELAVQVADVASSLISAIPDAPYTSATIIGGAGRD 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R   Q G  I V TPGRL + +R    + S ++ +V+DEAD MLD+GFRDD+  I+  
Sbjct: 116 MQRE--QTGT-ITVATPGRLLEFLRKDWFDPSTVEILVIDEADRMLDMGFRDDVASIVRE 172

Query: 176 SPKKRRMLMFSATISP-AITTLAKNYQKDAVRVNIAS--ENRQH--SDIDYRAVLVALSD 230
              + + ++FSAT+    I   A+    D + V + +  EN +     +  RA     S+
Sbjct: 173 LSNRYQTMLFSATLEGFGINDFARQVLNDPIEVRLGAGGENDEKLPEFLSSRAYFANDSE 232

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   I+  L       +I+F  T++ ++  +  L    F   +L GELSQ ER  AL+  
Sbjct: 233 QKFKILKHLLTTVQGRSIIFVKTKSRLADVSGKLRRSGFAFASLQGELSQTERKAALRRF 292

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
            D  A + +ATDVA+RG+DLPD+  V + +L ++    +HRSGRT RAG KG+ + ++  
Sbjct: 293 ADSSADILVATDVASRGLDLPDVTHVYNYDLPTSAAVYVHRSGRTARAGAKGVVISIVEG 352

Query: 350 ------QNMQRRAERLFREANVSVVWEPAP 373
                 Q ++R  +R+     +  + E  P
Sbjct: 353 ADLEKLQAIERYTDRVIERRTIKGICEEFP 382


>gi|303388373|ref|XP_003072421.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301561|gb|ADM11061.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 502

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/376 (32%), Positives = 191/376 (50%), Gaps = 41/376 (10%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           R Y   T +Q+  +   +  +++L  A TG GKT+ F       L+   +R+   + P A
Sbjct: 115 REYTAPTVIQKYCIPSMVDGRNLLCRAPTGMGKTMCF-------LIPIIERYQQMNKPQA 167

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN--GAHIVVGTPGRL 135
             I+PTREL  Q+  E   L      VV   I  VS++ +++DL +  G  I+V TPGRL
Sbjct: 168 CIISPTRELCEQIRTEASKL------VVGSKIRVVSIYGKKQDLPSYAGVDIIVATPGRL 221

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +    +++S ++  VLDEAD++LD+GF   I  I    PK  +  +FSAT SP +T 
Sbjct: 222 IDLLHKDKVDLSEVRMFVLDEADKLLDMGFEMPIREIHKFVPKNTQTCLFSATYSPKLTR 281

Query: 196 LAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH----------- 242
           +  NY    D V + I SE  ++     R  +V + ++   ++NILR             
Sbjct: 282 MI-NYFLPDDKVSIEIPSETLKN----IRQDIVEVRNKKKMLLNILRSSEINLKGSWRME 336

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF   ++      K L ++    V L G+  Q +R+ AL+  R+GR  V +AT
Sbjct: 337 VQPDKVLVFVERKSECGEVEKTLKKNGILCVTLHGDKEQSDRNEALKGFRNGRFPVMVAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARGID+ D++LVI+ ++  + +  +HR GRTGR G+ G S+      M       F+
Sbjct: 397 SVAARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGRSISFYDGGMSAD----FK 452

Query: 362 EANVSVVWE---PAPS 374
           +A + V+ E   P PS
Sbjct: 453 KALIEVLKESKNPIPS 468


>gi|253745237|gb|EET01285.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
          Length = 450

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 206/386 (53%), Gaps = 29/386 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLALASTLLAE 65
           P+++ +AL   G+V  T++Q+ +L      K  DV+  A+TGSGKT AF +     LL  
Sbjct: 10  PELL-DALERIGWVEPTAIQKEMLTVISTNKICDVVGVAETGSGKTGAFAIPALQDLL-- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R +       + ++PTRELAVQ       L    G+   + IGGV + ++R+ L    
Sbjct: 67  -ERGNNVKGVHTVVLSPTRELAVQTFSVFRDLGKDFGLRTGLVIGGVDLMQQRKILAQQP 125

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           H ++ TPGRL DH+   +G ++  ++ +++DEAD+ML+      +  +  + P++RR  +
Sbjct: 126 HALICTPGRLADHLASTEGFSLKSIRFLIIDEADKMLEQDMGRAVLDLAKACPQRRRTFL 185

Query: 185 FSATISPAITTLAKNYQKD-----AVRVNIASENRQHSD--------------IDYRAVL 225
           FSAT   A+  L +N   D      +RV + +++    D              + ++ V+
Sbjct: 186 FSATFPSAVQAL-QNECTDRSRLVHIRVGVLAKDAPEVDGSASTQLAVVDNELLSHKMVV 244

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +  +++   +V +L  H     IVF +  ++V++   +L    F+V  + G ++Q +R  
Sbjct: 245 LPHAEKQLGLVVLLNNHATCQIIVFATKISTVTKLALMLTTLGFEVGVVHGSMAQDKRLE 304

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R G  ++ +A+DVA RGID+P+++LVI+ +L     + +HR+GRT RAGR+G ++
Sbjct: 305 ELNRFRQGEHKILLASDVAGRGIDIPNVDLVINYDLPVASRDYVHRAGRTARAGRRGTAL 364

Query: 346 FVIPQNMQRRAERLFREANVSVVWEP 371
            ++ Q      +R+  EA + +  EP
Sbjct: 365 TIVTQYDVVNFKRI--EAMLGIRMEP 388


>gi|302496482|ref|XP_003010242.1| hypothetical protein ARB_03497 [Arthroderma benhamiae CBS 112371]
 gi|291173784|gb|EFE29602.1| hypothetical protein ARB_03497 [Arthroderma benhamiae CBS 112371]
          Length = 542

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 183/322 (56%), Gaps = 15/322 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 103 KAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 160

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 161 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 217

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK+ R+ ++FSA
Sbjct: 218 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKEDRQTMLFSA 277

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 278 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 336

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 337 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 396

Query: 304 AARGIDLPDLELVIHAELSSNP 325
           AARG+D+P ++ ++  +   +P
Sbjct: 397 AARGLDIPAVDYIVQLDPPDDP 418


>gi|1498229|emb|CAA67295.1| RNA helicase [Homo sapiens]
          Length = 610

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 132 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 189

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 190 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 249

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 250 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 309

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 310 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 369

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 370 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 429

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 430 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 475


>gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont]
          Length = 408

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 190/374 (50%), Gaps = 8/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L +E    +
Sbjct: 12  ILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQRL-SEKPAAA 70

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+ AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  +++
Sbjct: 71  RGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMMKLRGGVDVLI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT 
Sbjct: 131 ATPGRLLDLAHQNAVDLSQVEILVLDEADCMLDMGFIHDIRRVLAKLPAKRQNLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  LA+    +  +V +A  N     +  +   V    +   +  ++     +  +V
Sbjct: 191 SDEIKALAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMIGRDNWQQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D
Sbjct: 251 FTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAARGLD 310

Query: 310 LPDLELVIHAELSSNPENLLHR--SGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANVS 366
           + +L  V++ EL +  E+ +HR        A    +S+  + ++ + R  ERL +     
Sbjct: 311 IEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDIERLLKREIPR 370

Query: 367 VV---WEPAPSVEA 377
           +    +EP PS++A
Sbjct: 371 IALPGFEPDPSIKA 384


>gi|326790482|ref|YP_004308303.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326541246|gb|ADZ83105.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 470

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 188/360 (52%), Gaps = 12/360 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L  +G  +   +QE  L   L   DV++ + TGSGKT+AF L L   +          
Sbjct: 16  EGLKHQGITSPMPIQELTLPAFLEGHDVIIESHTGSGKTLAFVLPLFEKIDLTKREMQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQNGAHIVVG 130
               A+ +APT EL +Q+  ++  L   + + +  C  IG V++  + + L++   I+VG
Sbjct: 74  ----AIILAPTHELVMQIHEQITVLAKNSSLNIQSCPIIGEVNIDHQIKKLRDKPQIIVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           T GR+ D +  K +  S ++ V+LDEAD +LD    + I+ +L   PK R++ + SA++S
Sbjct: 130 TAGRILDLMTKKKITASTIQTVILDEADHLLDQNQANTIKKMLYLLPKDRQICLCSASMS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P      K +    V V  A +   +  I +  ++    ++ + +  +L     + A++F
Sbjct: 190 PTAIEAVKTFMTHPVIVRTAEQTVLNPRIKHFCLVSEQREKFDMLRKLLVATHTQRALIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S     +   + L  H   V  +SG+L+++ R  AL   R G+ ++ I++D++ARG+D+
Sbjct: 250 VSQNTDTTTLVEKLKHHGHSVATISGKLTKEARKAALTAFRSGKVKLLISSDLSARGLDV 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF-REANVSVV 368
           PD+  VIH +        LHR+GR+ R  ++G S+    P+++   A R+F R+ N++++
Sbjct: 310 PDITHVIHFDFPLTAHEYLHRAGRSARGFKEGHSICLATPKDLG--AIRIFERDFNITII 367


>gi|153839306|ref|ZP_01991973.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
 gi|149747170|gb|EDM58158.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
          Length = 412

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 167/325 (51%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  +D+L  A TGSGKT+A+GL L   L    ++        AL + PT
Sbjct: 24  TDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVNPEQK-------ALILVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   +  +     +      GGV   ++   L    HI+V T GRL D +   G
Sbjct: 77  RELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQHHALATNPHILVATTGRLVD-LANNG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L++S++  +VLDEAD +LD+GF  D++ I      +R+  MFSAT S  +   AK   + 
Sbjct: 136 LDLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMFSATFSDELKGKAKLLMQA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V    EN  + DI     LV    +  A++ +++ +     +VF   + +     K 
Sbjct: 196 PKQVAAHQENSTNQDIAETLHLVNKGSKTKALIELIQKNAWTQVLVFIGAKENADGLAKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G  SQ ER  AL   + G+ +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG +G+++ ++
Sbjct: 316 HAETYVHRVGRTARAGEQGVAMSLV 340


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 181/336 (53%), Gaps = 4/336 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-PA 72
            L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+     +   
Sbjct: 24  GLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNP 83

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ GA +V+ TP
Sbjct: 84  EDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATP 143

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATI 189
           GRL D+++  + +++   +  VLDEAD M DLGF  DI FIL   P++  R+ L+FSAT+
Sbjct: 144 GRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSATL 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LA  Y  +  ++   +E    + +  R    A  ++   ++ +L        +V
Sbjct: 204 SHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSRSEGMRTMV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +ATDVAARG+ 
Sbjct: 264 FVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLH 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  +  V + +L  + E+ +HR GRT R G  G ++
Sbjct: 324 IDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAI 359


>gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a
 gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a
          Length = 414

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 46  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 106 ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 159

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 220 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 279

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 340 LARGIDVQQVSLVINYDLPTNRENYIH 366


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 203/382 (53%), Gaps = 23/382 (6%)

Query: 11  IGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +GEA+++      YV  T VQ   +   L  +D++  AQTGSGKT AF   + + ++ E 
Sbjct: 162 LGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPIIAGIMREQ 221

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               P       PLAL ++PTREL+ Q+  E +    +TGV V V  GG  ++++ R+L+
Sbjct: 222 YVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPINQQLRELE 281

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSP-K 178
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I   +D  P  
Sbjct: 282 RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPCG 341

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++  + + + +         I  R   V   D+ + ++++
Sbjct: 342 MRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEIDKRSHLMDL 401

Query: 239 LRYH-----GAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L         +K++  +VF  T+        +L  + F   ++ G+ +QQER  AL+  +
Sbjct: 402 LHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQEREMALRSFK 461

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G++     +N
Sbjct: 462 SGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGLATAFFNEN 521

Query: 352 ---MQRRAERLFREAN-VSVVW 369
              + R    L +EAN V   W
Sbjct: 522 SMSLARPLADLMQEANQVVPAW 543


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 186/346 (53%), Gaps = 16/346 (4%)

Query: 15   LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-----LAENDRF 69
            L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF + L   +     L END  
Sbjct: 688  LKKLKYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFLIPLFRHVIDQPPLDEND-- 745

Query: 70   SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 P+A+ + PTRELA+Q+ RE +    +  +  A   GG  +  +  +L+ GA I+V
Sbjct: 746  ----GPIAIIMTPTRELALQIFREAKKFCKQLNLTAACIYGGSGISEQIAELKKGAEIIV 801

Query: 130  GTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
             TPGR+ D +    G+  N      +V+DEAD M D+GF   +  ILD+    R+ ++FS
Sbjct: 802  CTPGRMIDMLTANNGRVTNCRRCTYLVMDEADRMFDMGFEPQVMRILDNIRPDRQTVLFS 861

Query: 187  ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
            AT    +  +A+      + V +   +   SD++  A+++   ++   ++ +L  +  K 
Sbjct: 862  ATFPRQMEAIARKVLNKPIEVQVGGRSVVCSDVEQHALVIEEENKFFKLLELLGVYQEKG 921

Query: 247  AI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++ VF   + S     K L ++ +  ++L G + Q +R + +   ++G  ++ ++T VAA
Sbjct: 922  SVLVFVEKQESADMLFKDLLKNAYPCLSLHGGMDQFDRDSTIADFKNGVTKLMVSTSVAA 981

Query: 306  RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
            RG+D+ +L LV++ +  ++ E+ +HR GRTGRAG KG S  F+ P+
Sbjct: 982  RGLDVKNLVLVLNYDCPNHYEDYVHRVGRTGRAGNKGTSFTFITPE 1027


>gi|119499912|ref|XP_001266713.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143019652|sp|A1CW14|HAS1_NEOFI RecName: Full=ATP-dependent RNA helicase has1
 gi|119414878|gb|EAW24816.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 622

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 203/372 (54%), Gaps = 17/372 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L A   RF P 
Sbjct: 153 KAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSAL--RFKPR 210

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 211 NGTGVIVVSPTRELALQIFGVARELCQYHSQT---YGIVIGGANRRAEAEKLMKGVNLLI 267

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
            TPGRL DH++  +G    +LK +V+DEAD +L++GF D++  I+   P ++R+ ++FSA
Sbjct: 268 ATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSA 327

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS ++      V+     R   + + L+ + 
Sbjct: 328 TQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNL 386

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I TDV
Sbjct: 387 KKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICTDV 446

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  + Q  +    +  +E
Sbjct: 447 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFL-QPSEVGFLKHLKE 505

Query: 363 ANVSVVWEPAPS 374
           A V VV    P+
Sbjct: 506 ARVPVVEFEFPA 517


>gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus]
          Length = 405

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 37  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 96

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 97  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 150

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 151 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 210

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 211 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 270

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 271 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 330

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 331 LARGIDVQQVSLVINYDLPTNRENYIH 357


>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 407

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 180/350 (51%), Gaps = 5/350 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +DVL SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLP-ALQFLQDFPRKQPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARI-LILTPTRELAMQVAEQARALAKHTRLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+    
Sbjct: 135 RLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECRWRKQTLLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +     +  K+   ++     R+   I  +      ++ +   + +IL  + A+ +IVF 
Sbjct: 195 VEGFTADLLKEPAMIDAEPSRRERKKIAQWYHRADDMAHKLELLKSILN-NQAERSIVFL 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR  +S     L +       + GE+ Q  R+NA+    DG   V +ATDVAARGIDLP
Sbjct: 254 KTRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVNVLLATDVAARGIDLP 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++  VI+ ++  + +  LHR GRT RAG+KG ++ ++  + Q   ER+ R
Sbjct: 314 NVTHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQPMIERVAR 363


>gi|301117296|ref|XP_002906376.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262107725|gb|EEY65777.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 590

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 185/348 (53%), Gaps = 29/348 (8%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           YV LT+VQ       +  KDVL  A+TG+GKT+AF L +   ++ E  R   +     LA
Sbjct: 113 YVRLTNVQNETFPLIVEGKDVLAKAKTGNGKTIAFLLPVIENMVKEGRR---SGVIPTLA 169

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA--HIVVGTPGRLCD 137
           I+PTRELA+Q+  E + L       VA  +GG ++ ++ R L +     I+V TPGRL D
Sbjct: 170 ISPTRELALQIATEAKRLTKYHDFNVACFVGGANIKKDERALTSSTPIDILVATPGRLVD 229

Query: 138 HIR---GKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           H++   GK  N +     ++LDEAD +LD+GFR D+  I+   PK+R+ L+FSAT+ PA 
Sbjct: 230 HLKQNTGKIANRLGKASVLILDEADRLLDMGFRPDVMRIIGYLPKERQTLLFSATL-PAS 288

Query: 194 TTLAKN--YQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNILRYH---GAKN 246
           T   K    +KD   V+   EN   +++  +   ++  + +    +  +L  H    A  
Sbjct: 289 TEELKQVALRKDYSFVDTIDENEADTNVQTEQEYIVCKMGEVIPMVERVLAEHMKLAAYK 348

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGEL------SQQERSNALQMMRDGRARVCIA 300
            ++F  T    +R  + +A+ LFQ     G L      SQ  R+   +  R G+  +  +
Sbjct: 349 VMLFFPT----ARSAQFMAQ-LFQAAGYPGVLEIHSRKSQAVRTKTAEAFRKGKKVMMFS 403

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +DV+ARG+D PD+ LV+   L+   +  +HR GRT RAG KG  V ++
Sbjct: 404 SDVSARGVDYPDVSLVLQVGLTDR-DQYIHRLGRTARAGMKGKGVLIL 450


>gi|148727325|ref|NP_001092045.1| eukaryotic initiation factor 4A-I [Pan troglodytes]
 gi|158514251|sp|A5A6N4|IF4A1_PANTR RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|146741502|dbj|BAF62407.1| eukaryotic translation initiation factor 4A, isoform 1 [Pan
           troglodytes verus]
          Length = 406

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 186/370 (50%), Gaps = 24/370 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y N T VQ+  +      +D++  AQTGSGKT  F   + S L        P SA     
Sbjct: 209 YTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPILSALFTHGP--PPPSAAEMAQ 266

Query: 75  ---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTREL  Q+  E      ++ V  AV  GG  +  + R ++ G 
Sbjct: 267 GGYNRRKAYPSTLILAPTRELVSQIHDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGC 326

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----RR 181
            ++  TPGRL D +    +++S+++ +VLDEAD MLD+GF   I  I++         R+
Sbjct: 327 DLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFEPQIRRIVEGEDMPGVMDRQ 386

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    I  LAK++ K+ V +++        +I  +   V   D+ + ++++L  
Sbjct: 387 TLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLAS 446

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             +    ++F  T+      +  L        ++ G+ +Q+ER  AL++ R G+  + +A
Sbjct: 447 MPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVA 506

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAE 357
           T VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G +        +N+ R   
Sbjct: 507 TAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLI 566

Query: 358 RLFREANVSV 367
            L +EAN  V
Sbjct: 567 ELLKEANQEV 576


>gi|50823|emb|CAA31025.1| unnamed protein product [Mus musculus]
          Length = 407

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I   +       ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYERVQKLNTSIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMQAIYFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|301754659|ref|XP_002913145.1| PREDICTED: ATP-dependent RNA helicase DDX55-like [Ailuropoda
           melanoleuca]
 gi|281343809|gb|EFB19393.1| hypothetical protein PANDA_000939 [Ailuropoda melanoleuca]
          Length = 600

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 194/360 (53%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+G AL E G+  +T VQ A +   ++ KDV   A TGSGKT+AF + +   LL   +
Sbjct: 18  PRVLG-ALRELGFPYMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEILLRREE 76

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE-RRDLQNGA 125
           +        A+ I PTRELA+Q+   L  ++         + IGG +   +  R  + G 
Sbjct: 77  KLKKNQVG-AIIITPTRELAIQIDEVLAHFMKPFPQFSQILWIGGRNPGEDVARFKEQGG 135

Query: 126 HIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +I+V TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   I  IL+  PK+
Sbjct: 136 NIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQ 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAVLVALSDRD 232
           RR  +FSAT +  + +L +   ++ VR+++       +S  +  S ++   ++    ++ 
Sbjct: 196 RRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENYYMVCKADEKF 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMM 290
           N +V+ L+ H  +  ++F ST A V  + K L   +   +V+ + G++ + +R       
Sbjct: 256 NQLVHFLQNHKQEKHLIFFSTCACVEYYGKALEALVKGVEVMCIHGKM-KYKRGKIFMEF 314

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           R  ++ + + TDV ARGID+P++  V+  +  S+    +HR GRT R G  G + VF++P
Sbjct: 315 RRSQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRTARIGHGGSALVFLLP 374


>gi|169853643|ref|XP_001833501.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
 gi|116505540|gb|EAU88435.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
          Length = 619

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/356 (30%), Positives = 179/356 (50%), Gaps = 14/356 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  I + L  +   N T +Q   +      +D++  A TGSGKT+AF + L    L E 
Sbjct: 191 IPDPILQYLKSKNIKNPTPIQLQGIPAAFSGRDIIGIAFTGSGKTLAFCMPLIMLALEEE 250

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELE-WL--YAKTG----VVVAVCIGGVSVHRE 117
            +  F     P+ + + P+RELA Q    ++ W    +++G    +   +CIGGVS+  +
Sbjct: 251 AKLPFVQGEGPVGIILCPSRELASQTYENIQTWCTSLSQSGKYPQLNCLLCIGGVSMSEQ 310

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L  G HIVV TPGRL D +  K    ++ K + +DEAD M+DLGF DD+  I+    
Sbjct: 311 SRVLNKGLHIVVATPGRLIDMLEKKRFTFNNCKYLCMDEADRMIDLGFEDDVRNIMSFFK 370

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ L+FSAT+   I   A       + VN+      + D+     +V    ++  +V 
Sbjct: 371 RQRQTLLFSATMPKKIQDFATESLIKPILVNVGRAGAANLDV---LQVVEYVKQEAKMVY 427

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L          I+F   +  V    + L     + VA+ G  +Q+ER  A++  + G  
Sbjct: 428 LLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKAFKSGAK 487

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            V +A+ VA++G+D  D++ VI   +    E+ +H+ GRTGR+G+ G++   +  N
Sbjct: 488 DVMVASGVASKGLDFNDIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFVNMN 543


>gi|119192364|ref|XP_001246788.1| probable ATP-dependent RNA helicase [Coccidioides immitis RS]
 gi|118572554|sp|Q1EA54|HAS1_COCIM RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 604

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 194/363 (53%), Gaps = 25/363 (6%)

Query: 5   ENIPQVIGE---------ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           EN PQ   E         A+ E G+  +T +Q   + P +  +DVL +A+TGSGKT++F 
Sbjct: 120 ENEPQKFTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFL 179

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGV 112
           +     L A   RF P +    + ++PTRELA+Q   V REL   +++T     + IGG 
Sbjct: 180 IPAVEMLSAL--RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGA 234

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +   E   L  G ++++ TPGRL DH++   G    +LKA+V+DEAD +L++GF D++  
Sbjct: 235 NRRAEAEKLTKGVNLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQ 294

Query: 172 ILDSSPKK-RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           I+   P + R+ ++FSAT +  +  LA+ + +   + +N+    ++HS ++       + 
Sbjct: 295 IVKILPSEDRQTMLFSATQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVIC 353

Query: 230 DRDN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           D D     + + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N 
Sbjct: 354 DSDKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNT 413

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSV 345
                + +    I TDVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+
Sbjct: 414 FFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSL 473

Query: 346 FVI 348
             +
Sbjct: 474 MFL 476


>gi|58465419|gb|AAW78518.1| DEAD box RNA helicase-PL10A [Monopterus albus]
          Length = 376

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 173/333 (51%), Gaps = 21/333 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--------------- 64
           Y   T VQ+  +      +D++  AQTGSGKT AF L + S +                 
Sbjct: 44  YTRPTPVQKHAIPIIKTRRDLMACAQTGSGKTAAFLLPVLSQIYTDGPGDALQASKNSGQ 103

Query: 65  ENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN R+      P++L +APTRELA ++  E      ++ V   V  GG  + ++ R+L+ 
Sbjct: 104 ENGRYGRRKQYPISLVLAPTRELASRIYDEARKFAYRSHVRPCVVYGGADIGQQIRELER 163

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +      + H   +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 164 GCHLLVATPGRLVDMMERGKTGLEHCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGI 223

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ +D + + +        +I  + V V  +D+ + ++++L
Sbjct: 224 RQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLL 283

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G ++  +VF  T+         L    +   ++ G+ SQ++R  AL   R GR  + 
Sbjct: 284 NATGKESLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHHFRSGRCPIL 343

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           +AT VAARG+D+ +++ VI+ +L S+ E  +HR
Sbjct: 344 VATAVAARGLDISNVKHVINYDLPSDIEEYVHR 376


>gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|300934004|ref|ZP_07149260.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 386

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 184/369 (49%), Gaps = 12/369 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++ G  +   +Q A +   ++ +D+L    TGSGKT  FGL +  +L       S
Sbjct: 17  IVRALNQEGVKHPFPIQAAAIPQAIQGRDILGRGPTGSGKTFTFGLPIIESL---QRGAS 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P AL + PTRELA QV + LE +    G  V   +GGV + R    L     I+V 
Sbjct: 74  APKKPRALILVPTRELAAQVRQRLEPIANAAGQRVLEVVGGVKISRNITALARPVDILVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR  D +  K L+ S ++ + LDEAD+M D+GF   +  +L     + + L+FSAT+ 
Sbjct: 134 TPGRAQDLLDQKQLDFSEVRILALDEADQMADMGFLPQVTRLLQRLNSECQHLLFSATLD 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYHGAKN 246
             +  L   +  + V     S     + +D    L+A+ D    R+ AI+ + +    + 
Sbjct: 194 GDVQILVNRFMNEPV---THSTGEATASVDSMQHLLAVFDERDARNAAIIELGKL--GRR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +V R  K L       V L G+  Q  R NAL     G   V +ATD+AAR
Sbjct: 249 TVMFMRTKYAVDRQVKKLVRAGVPAVGLHGKKGQSTRENALGAFSTGEVSVLVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ELV+H +  +  +  +HR+GRT RAG +G  V +   +++    ++  +A VS
Sbjct: 309 GIDVKDVELVVHIDPPAEHKAYVHRAGRTARAGAEGTVVTLTYADIKDDTLKMMTKAGVS 368

Query: 367 VVWEPAPSV 375
                 P +
Sbjct: 369 PEIVAGPQI 377


>gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca]
          Length = 400

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 32  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 92  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 145

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 146 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 205

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 206 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 265

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 266 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 325

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 326 LARGIDVQQVSLVINYDLPTNRENYIH 352


>gi|299822903|ref|ZP_07054789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
 gi|299816432|gb|EFI83670.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
          Length = 435

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 179/340 (52%), Gaps = 10/340 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ + G+   T VQ+ ++   +R + ++  +QTG+GKT  F L L        ++  
Sbjct: 16  INKAIHKIGFYEPTEVQQKLIPGIMRGESIIGQSQTGTGKTHTFLLPLI-------NKID 68

Query: 71  PASAPLALAI-APTRELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHI 127
           P    + + I AP+RELA Q+  E   +  ++   ++  + IGG    R    L+   HI
Sbjct: 69  PEKHEIQIVITAPSRELATQIYNEARKITEESEQPISTRLLIGGTDKQRMLDKLKTQPHI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ D IR K L +   KA+V+DEAD  LD+GF +D++ I    P   +ML+FSA
Sbjct: 129 IIGTPGRINDMIREKALAVYTAKALVIDEADMALDMGFLNDVDAIAGKMPPNLQMLVFSA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++    +I  +    + + +  +     D+ + +   L        
Sbjct: 189 TIPEKLKPFLKKYMENPRYEHIQPKVVSSTAVTHTLLASKSRDKIDLLKEALTIFQPFLG 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+ +       L E   +V  + G++S +ER   ++ + +   +  +ATD+AARG
Sbjct: 249 IVFTNTKQTADEVAAGLTERGLKVAKIHGDVSPRERKRTMKQVENMDYQYIVATDLAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL  + +  +HR+GRTGRAG  G+++ +
Sbjct: 309 IDIQGISHVINFELPDDLDFYIHRTGRTGRAGHSGIALTI 348


>gi|71000162|ref|XP_754798.1| eukaryotic translation initiation factor 4 [Aspergillus fumigatus
           Af293]
 gi|74674080|sp|Q4WX43|IF4A_ASPFU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|66852435|gb|EAL92760.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus Af293]
 gi|159127807|gb|EDP52922.1| eukaryotic translation initiation factor 4, putative [Aspergillus
           fumigatus A1163]
          Length = 406

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P      A
Sbjct: 44  GFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKL-------DPNVKGCQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + LQ G  +VVGTPGR+ D
Sbjct: 97  LILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L   +LK  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 337 INYDLPANRENYIH 350


>gi|301108607|ref|XP_002903385.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262097757|gb|EEY55809.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 666

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 177/351 (50%), Gaps = 35/351 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++ Q     L   G  +L  VQ    +  ++  D++  ++TGSGKT+AF L    T+LA 
Sbjct: 88  DLSQETQRNLERAGVTHLFPVQTQSFDVMMKGSDIMGRSKTGSGKTLAFALPTIETILAN 147

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N R      P AL + PTRELA QV  +++ +  +   +  V  GGVS   +   L+ 
Sbjct: 148 RKNTR-----NPQALVLLPTRELAQQVHDQVQRVAPQLRTINVV--GGVSYTVQENQLRR 200

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ D +    L++  +   VLDEAD ML  GF++ +E IL   P   + L
Sbjct: 201 GVDILVGTPGRIMDLVDKGSLSLEDVDVSVLDEADMMLKFGFQEAVETILGWVPDGGQTL 260

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRY 241
                                V +++  +N  H  + + ++A+L    DR   + N+LR 
Sbjct: 261 ---------------------VNIDLVGDNDNHVPATVAHKAILAPSRDRIQVLENVLRL 299

Query: 242 HGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           H      +VF  T+         L        AL G+LSQ  R++ +   R+G  +  + 
Sbjct: 300 HAHDGQTLVFTETKQEADEIANSLPGQ--DARALHGDLSQGMRTSTMNGFRNGHVKTLVC 357

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           TD+AARG+D+ ++ELV+   L S+ E+ +HR+GRTGRAGR G ++    +N
Sbjct: 358 TDIAARGLDIANVELVVQYRLPSDKESFVHRAGRTGRAGRSGTNIVFFDRN 408


>gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens]
 gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus]
 gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus]
 gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus]
 gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa]
 gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus]
 gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1
           [Equus caballus]
 gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
 gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda
           melanoleuca]
 gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens]
 gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus]
 gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus]
 gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus]
 gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus]
 gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus]
 gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus]
 gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus]
 gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus]
 gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus]
 gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus]
 gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus]
 gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus]
 gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus]
 gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus]
 gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus]
 gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus]
 gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus]
 gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus]
 gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus]
 gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus]
 gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus]
 gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus]
 gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus]
 gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus]
 gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus]
 gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa]
 gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis]
 gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus
           norvegicus]
 gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct]
 gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens]
 gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus]
 gi|227238|prf||1617105B initiation factor 4AI
          Length = 406

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|262403250|ref|ZP_06079810.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350749|gb|EEY99882.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 412

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 168/325 (51%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 24  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 76

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +     +      GGV    ++  L     I+V T GRL D +   G
Sbjct: 77  RELAMQVSEVLTHVGTPLELNTLCLCGGVDKTEQQNALAENPTILVATTGRLFD-LTQSG 135

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L+++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+     
Sbjct: 136 LSLNRVSTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCSATFSDDLKLKAQQLMHA 195

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 196 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 255

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +      AL G+ SQ ER  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 256 LNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLIATDLLARGIHIEQLPVVINFELPM 315

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + +  +HR GRT RAG++G+++ ++
Sbjct: 316 HAQTYVHRVGRTARAGQQGIAISLV 340


>gi|294867179|ref|XP_002764990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239864870|gb|EEQ97707.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 580

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 172/339 (50%), Gaps = 24/339 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+A+ L  A   +A          P+AL + PTREL+ Q+  E    
Sbjct: 221 RDLVGVAETGSGKTLAY-LMPAIVHIAAQPEVEQGDGPVALVLVPTRELSQQLLAESMLQ 279

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
                + +A   GG    ++ R+L     ++V TPGRL D ++    N+  +  +V+DEA
Sbjct: 280 IGSVPLRIACVYGGQPKRQQERELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEA 339

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-AVRVNIASENR-- 214
           DEML LGF   ++ I  +    R+ LM+SAT    I  LA+ + ++  V +NI S++   
Sbjct: 340 DEMLALGFGRQLDSICSAIRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAA 399

Query: 215 -----------QHSDIDYRAVLVALSDRDNAI---VNILRYHGAKNAIVFCSTRASVSRF 260
                      +H  +  +  +      DN I    N+L  +G   A++FC+T+  V + 
Sbjct: 400 CHQVTQDFVFLEHPGMKQKEFM------DNVIPKVWNVLESNGEAKALIFCNTKREVDQL 453

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T++L    +  V +  +  Q ER       RDG  R+ +AT++  RG+D+ +++ VI+ +
Sbjct: 454 TQLLRSQGYNAVCIHSDKEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYD 513

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +  N E  +HR GRT RAG  G S+ +      R A+ L
Sbjct: 514 MPQNVEEYVHRIGRTARAGAHGTSITLFTAQEGRHAKDL 552


>gi|229825333|ref|ZP_04451402.1| hypothetical protein GCWU000182_00687 [Abiotrophia defectiva ATCC
           49176]
 gi|229790705|gb|EEP26819.1| hypothetical protein GCWU000182_00687 [Abiotrophia defectiva ATCC
           49176]
          Length = 386

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 181/339 (53%), Gaps = 18/339 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T VQEA     L      V A TGSGKT+A+ L L        +++        +
Sbjct: 20  GFKSPTPVQEAAYKKILEGGSFFVQAPTGSGKTLAYLLPLF-------EKYKKTERENKI 72

Query: 79  AI-APTRELAVQVGRELEWLYAKTGV-VVAVCIGG-VSVHRERRDLQNGAHIVVGTPGRL 135
            I APT ELA+Q+ R+ E +   TG+ + +VC+GG  S+ R+  +L+    I+VGTPGR+
Sbjct: 73  VIVAPTTELALQIHRQAELVRGNTGIGLHSVCLGGNASIIRQIENLKKKPQIIVGTPGRI 132

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + +    ++ +VLDE D + D   ++  + ++    + R++L+FSAT + +   
Sbjct: 133 TDLIRKRKIAAHLVRTLVLDEGDRLFDKNNKETTDALIKCFVRDRQLLLFSATATDSALE 192

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGA---KNAIVFC 251
            A+ + KD   +         ++I +  V+    ++    + ILR   GA   + AI+F 
Sbjct: 193 GARAWDKDITEIIADGGKEIPANIKHWYVVCEKRNK----LEILRGTTGAIRTRKAIIFV 248

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +    +    K LA H +QV  + GE +++ER  A+Q     + +  IATD+AARG+   
Sbjct: 249 NGIYDIEETYKKLAHHHYQVDFIGGERTKEERKKAMQGFLHKKIKYLIATDIAARGLQFD 308

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           D++ V H  L  N +  LHR+GRTGRAGR G ++ +I +
Sbjct: 309 DVDTVFHVNLPENADTYLHRAGRTGRAGRVGRNLSIITE 347


>gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 693

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 193/370 (52%), Gaps = 15/370 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S   YVN T +Q A +   L  KD+   A TG+GKT A+ + +   LL  
Sbjct: 158 NLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPILERLL-- 215

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    +   L + PTRELA+QV      L   T + +A+  GG+ +  +   L+ 
Sbjct: 216 ---FKPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAALRL 272

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +V+ TPGRL DH+    G N++ ++ +VLDEAD MLD  F + +  I+      R+ 
Sbjct: 273 NPDVVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPTRQA 332

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVN 237
           ++FSAT++  +  LA    K  V++   +EN + + ++ R   V +       R+ ++  
Sbjct: 333 MLFSATMTDKVKDLASVSLKKPVKL-FVNENTEMA-LNLRQQFVRIRKERECSREASLAA 390

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+       ++F  T+    R   +L     +V  L G LSQ +R +AL+  + G   V
Sbjct: 391 LLKRSFTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFKKGVVDV 450

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  ++ VI+ ++    +  +HR GRT RAGR G +V  + ++ ++  +
Sbjct: 451 LVATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSEDDRKLVK 510

Query: 358 RLFREANVSV 367
            + +    S+
Sbjct: 511 EIVKHCPTSI 520


>gi|302886988|ref|XP_003042383.1| hypothetical protein NECHADRAFT_51970 [Nectria haematococca mpVI
           77-13-4]
 gi|256723293|gb|EEU36670.1| hypothetical protein NECHADRAFT_51970 [Nectria haematococca mpVI
           77-13-4]
          Length = 565

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 216/431 (50%), Gaps = 39/431 (9%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           P VI     + G+  +T VQ A ++  L     D LV A+TG+GKT+AF L    T+L E
Sbjct: 83  PLVIRTITEDMGFEFMTPVQAATVDELLPPNRSDCLVQAKTGTGKTMAFLLPALQTMLTE 142

Query: 66  NDRFSPASAPLAL-AIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQN 123
           N    P  A ++L  I+PTRELA+Q+  E   L  +     V + IGG +  RE + + +
Sbjct: 143 N---RPVDAGISLLVISPTRELAMQISTEATKLLQRLPRYRVQIAIGGTNKDREEKQILS 199

Query: 124 GAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
           G  I++ TPGRL DH+  + +  ++ ++ ++VLDEAD +LD+GF  D+  I++  P K  
Sbjct: 200 GCDILIATPGRLLDHLSNEEIVYSLRNVNSLVLDEADRLLDMGFMKDLREIVNRLPDKKD 259

Query: 180 --RRMLMFSATISPAIT-----TLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDR 231
             R+ ++FSATI+P +       LA  Y+   +    A E   H  +    V V      
Sbjct: 260 TNRQGMLFSATIAPHVQQVAGLVLAPGYK--FISTIPAGEVNTHERVPQFLVEVPTFGAV 317

Query: 232 DNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLA--EHLFQVVALSGELSQQERSN 285
             A+   +R   A++    AI+F  T A    + ++L+    L  V  L   +SQ +R+ 
Sbjct: 318 AAAMAGCVRQEAAQSGTFKAILFAPTAALADFYGQILSALPGLPPVSVLHSRMSQNKRTK 377

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                RD  + + +ATDV ARG+D P +  VI   L ++ ++ +HR GRT RA   G  V
Sbjct: 378 ITNEYRDSSSSILVATDVVARGMDFPGVTTVIQVGLPADKQSYIHRLGRTARADADGRGV 437

Query: 346 FVI-------PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-----FL 393
            ++       P+   +      RE ++S+  E     E + E D  RI Q  L     +L
Sbjct: 438 LIVSAAEAWFPKWSLKEITLRPREPDLSLAGEVLSIAEKMEEDDKARIYQAWLGYYNNYL 497

Query: 394 DSIQGDEKKMV 404
            +++ D+ ++V
Sbjct: 498 KNLKWDKVELV 508


>gi|258564346|ref|XP_002582918.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
 gi|237908425|gb|EEP82826.1| eukaryotic initiation factor 4A-6 [Uncinocarpus reesii 1704]
          Length = 398

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 168/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + L +G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSIECHACIGGTSVRDDMKALSDGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLDVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLIARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKASQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|47221681|emb|CAG10153.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 178/342 (52%), Gaps = 9/342 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P ++  DV   +Q+G+GKT  + +++   +              A+
Sbjct: 7   GFEKPSVIQQRAIIPCIKGFDV--KSQSGTGKTATYVISVLQRINVMKKETQ------AI 58

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    GV    CIGG ++H +  +L++   HI+VGTPG + D
Sbjct: 59  ILAPTRELAYQIQKVVLSLGDYMGVRCHACIGGTNIHEDIENLKSTNPHIMVGTPGHVFD 118

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + ++   ++ +VLDEAD+ML  GF+D I  I    P   + ++ SAT+ P +  + 
Sbjct: 119 MLGRRAVSSKAIRMLVLDEADQMLGHGFKDQIHEIFCKLPTNIQAILLSATMPPDVLEVT 178

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K + ++ V + +  E      I    +      +  ++  +        A++F +TR   
Sbjct: 179 KRFMQNPVNILVKKEELTVEGIQQFYITETEEKKLKSLCRLYETLTITQAVIFVNTRRKA 238

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L    F V  L  E+ Q ER   ++  R G +RV I TD+ ARGI++    LVI
Sbjct: 239 EWLTQELTSKDFTVSVLHSEMGQSERDTTMKEFRSGSSRVFITTDLLARGINVQHASLVI 298

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           + +LS++ EN +HR GR+GR GRKG+++ ++ +  Q    ++
Sbjct: 299 NFDLSTSLENYIHRIGRSGRFGRKGVAINMVTEETQHMLTKI 340


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/373 (32%), Positives = 197/373 (52%), Gaps = 42/373 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E+L        T++Q A +   L+ +D +  A+TGSGKT+AFG    + +LA+ 
Sbjct: 9   LPRWLVESLQAMKITRPTNIQAACIPEILKGRDCIGGAKTGSGKTIAFG----APMLAKW 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    S    L + PTRELA+Q+  +   L A   + V + IGG S+  +   ++   H
Sbjct: 65  SQ--DPSGIFGLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQVAMIKENPH 122

Query: 127 IVVGTPGRLC-------DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            ++ TPGRL        D  RG    +  +K +VLDEAD +L   F D ++   ++ P  
Sbjct: 123 FIIATPGRLAHIIMENEDECRG----LKRVKYLVLDEADRLLTDSFTDHLQTCFEALPNS 178

Query: 179 -KRRMLMFSATISPAITTLAKN-----------YQKDAV-RVNIASENRQHSDIDYRAVL 225
            KR+ L+F+AT++ ++  L              ++ D V  V I S  R         VL
Sbjct: 179 NKRQTLLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKIPSTLR------LLYVL 232

Query: 226 VALSDRDNAIVNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQE 282
             +  +++ + NIL     K   AIVF + R+  +   + L  HL     +L  E+ Q E
Sbjct: 233 APVVVKESMLHNILTNEDYKESTAIVFVN-RSETAEILRRLLRHLEVTTTSLHSEMPQSE 291

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+N+L   R G ARV +ATD+A+RG+D+P +ELVI+ ++  +P++ +HR GRT RAGRKG
Sbjct: 292 RTNSLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARAGRKG 351

Query: 343 MSV-FVIPQNMQR 354
            ++  V P ++ R
Sbjct: 352 DAISMVTPNDLSR 364


>gi|308050782|ref|YP_003914348.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632972|gb|ADN77274.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 179/345 (51%), Gaps = 14/345 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL++ GY   T++Q A+L   L E+D+L SA TG+GKT A+ L     LL    R  
Sbjct: 12  LEKALAKSGYTKPTTIQRAVLEAALEERDILASAPTGTGKTAAYLLPALQHLLDFPRR-- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A     L + PTRELA QV      L A T + +   +GG     +   L+    I+V 
Sbjct: 70  EAGHARVLVLTPTRELAQQVEAYGRKLLAGTQLSIGAIVGGKDYQHDADLLKQNMDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL  ++  +  +   ++ +V+DEAD MLD+GF   ++ I   +  +++ ++FSAT+ 
Sbjct: 130 TPGRLIMYLEDEKFDPRQVEIMVIDEADRMLDMGFMPVVDRIAAETRWRKQTMLFSATLE 189

Query: 191 PA-ITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNA---IVNILRYHG 243
            A +    +    D V  +     SE ++ +   YRA      D D+    +  +L    
Sbjct: 190 GAGLDNFVRELLNDPVHCDAKPPRSERKKITQYYYRA-----DDMDHKFKLLKRLLADPE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F  TR   +     L     +   L G + Q +R +AL+  R+GR +V +ATDV
Sbjct: 245 CTRAMIFTKTRDRATELHAKLFAAKIRTAVLQGAMVQGKRDDALERFREGRVQVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+ ++  VI+ +L    E  LHR GRT RAG KGM++ ++
Sbjct: 305 AARGIDIANVTHVINFDLPRTSEVYLHRIGRTARAGAKGMALNLV 349


>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 397

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
 gi|74897069|sp|Q54Q94|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
           Full=DEAD box protein 10
 gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
          Length = 878

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/357 (31%), Positives = 194/357 (54%), Gaps = 20/357 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q+  +AL+E  ++ LT +Q A L   L  +D+L +A+TGSGKT++F L +  T
Sbjct: 143 FKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPILET 202

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R+       A+ ++PTRELA+Q+   L+ +         + IGG +V +E+ D 
Sbjct: 203 LW--RNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEK-DK 259

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  +I++ TPGRL  H+    G + S+LK +VLDEAD +LDLGF   +  I+++ P++R
Sbjct: 260 INAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRER 319

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           + L+FSAT + +I  LA+   ++   +++  ++   +  +    L  + L  + N + + 
Sbjct: 320 QTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNMLFSF 379

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-------ALSGELSQQERSNALQMMR 291
           ++ H     IVF ++   V RF    A   F+++        L G++ Q  R    +   
Sbjct: 380 IKTHLTSKIIVFFASCKQV-RF----AHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFC 434

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +A    ATD+AARG+D P +E VI  +   + E  +HR GRT R    G S+ ++
Sbjct: 435 KKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITIL 491


>gi|94733898|emb|CAK11017.1| novel protein [Danio rerio]
          Length = 505

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 201/393 (51%), Gaps = 17/393 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P V+   L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L +++
Sbjct: 99  PTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QSE 157

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SP S P  L + PTRELA+Q+  +  E +     +  A+ +GG+ +  +   L++   
Sbjct: 158 SASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNIK 216

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ S
Sbjct: 217 IVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLTS 276

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YH 242
           ATI      LA+    D V + I  +N+  +++    + V    +   +  IL     Y 
Sbjct: 277 ATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLYQ 336

Query: 243 GAKNAIVFCSTRASV--SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 V C   A +      KV++      VA+  +  Q ER+  ++ + +G+  V I+
Sbjct: 337 PPVVVFVDCKLGADLLCEAVQKVMS---LNTVAIHSDKMQWERNKIVKGLLEGQFDVVIS 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           T +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++  +  N +R   E +
Sbjct: 394 TGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMV 453

Query: 360 FREANVSVVWEP----APSVEAIRERDAQRILQ 388
            R      +  P    +P +   + RD Q+  Q
Sbjct: 454 KRVKPTGSILPPQILNSPHLHEQQRRDKQKNTQ 486


>gi|239982147|ref|ZP_04704671.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 381

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/272 (37%), Positives = 151/272 (55%), Gaps = 3/272 (1%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  QV  +L        V V    GG +   +   L  G  ++VGTPGRL D  
Sbjct: 1   MVPTRELCQQVTNDLLTAGKVRDVRVLAIYGGRAYEPQVEALNKGVDVIVGTPGRLLDLA 60

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
             + L++ H+KA+VLDEADEMLDLGF  D+E I+   P KR+ ++FSAT+  A+  LA+ 
Sbjct: 61  GQRKLDLGHVKALVLDEADEMLDLGFLPDVERIVTMLPAKRQTMLFSATMPGAVIGLARR 120

Query: 200 YQKDAVRVNIASENRQHSDIDYRA--VLVALS-DRDNAIVNILRYHGAKNAIVFCSTRAS 256
           Y      +   S + + + +   A  V  A S D+   +  IL+  G   A++FC T+ +
Sbjct: 121 YMTQPTHIRATSPDDEGATVANIAQHVFRAHSMDKPELVSRILQAEGRGLAMIFCRTKRT 180

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
            +   + L    F   A+ G+L Q  R  AL+  R+G+  V + TDVAARGID+  +  V
Sbjct: 181 AADIAEQLQRRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHV 240

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           I+ +   + +  LHR GRTGRAGR G+++ ++
Sbjct: 241 INYQTPEDEKTYLHRIGRTGRAGRAGIAITLV 272


>gi|256421635|ref|YP_003122288.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036543|gb|ACU60087.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 446

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 180/358 (50%), Gaps = 17/358 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + GY   T +Q+ + +  +  +DV   AQTG+GKT A+ L         
Sbjct: 7   NLSRPLLNALEDLGYKTPTVIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPCLRQFKFS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +RF     P  L + PTREL VQV   ++ L     V +A   GGV+++ +        
Sbjct: 67  KERF-----PQLLILVPTRELVVQVVDAVKQLTPYMSVEIAGFYGGVNMNPQMETASGKL 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +    L +  +K +V+DE DEML+LGFR  +E ILD  P +R+ L+F
Sbjct: 122 DVVVATPGRLVDIVLSGTLKLKAIKRIVIDEMDEMLNLGFRPQVERILDLLPVRRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI+  +  L + +      V  A       +I   A  V         VN+L    AK
Sbjct: 182 SATITEDVEKLIQTHFNAPATVEAAPAGTPLKNISQSAYDVP---NFYTKVNLLELLLAK 238

Query: 246 NA-----IVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVC 298
           ++     +VF +T+   +   + L E  F  Q   +    +Q  R N +   +DG  R  
Sbjct: 239 DSSMNKVLVFVATKEMANDLYEQL-ETKFPEQAGVIHSNKAQNHRFNTVNKFKDGSYRFI 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRR 355
           IATD+ ARG+D+ ++  VI  +    PE+ +HR GRTGRA ++G S+ F  PQ  + +
Sbjct: 298 IATDIIARGLDIAEVSHVISFDTPEVPESYMHRIGRTGRADKEGHSILFTKPQEKENK 355


>gi|229174959|ref|ZP_04302479.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
 gi|228608627|gb|EEK65929.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
          Length = 436

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    P+  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIASRMPRNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|257068436|ref|YP_003154691.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559254|gb|ACU85101.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 507

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 176/368 (47%), Gaps = 7/368 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  +   L+ +G      +Q AIL   L  +DVL  A+TGSGKT+AF LA+ S 
Sbjct: 15  FEDMALPDEVLGVLAGQGLERAFEIQSAILPDALSGRDVLARAETGSGKTLAFTLAMTSR 74

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R      PL + + PTRELAVQV   +       G    +  GG+++ ++   +
Sbjct: 75  F---RGRKVHRRRPLGVVLVPTRELAVQVVDTIHPFARAVGTSAQLVAGGMNIEKQADAV 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  IVV TPGRL D      L +  +++ V+DEAD M DLGF  D+  IL + P   +
Sbjct: 132 ARGVGIVVATPGRLIDLAERGALQLDLVESTVIDEADHMADLGFLPDVRDILAAIPMGTQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  +  ++  D V           + +D+  + VA + +      +   
Sbjct: 192 KMLFSATLDGQVEQIVDSFLVDPVSHETTPVTAAVATMDHHVLAVAPAAKREVTAQLAAR 251

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G    ++F  T+    R  + L E      AL G   Q  R+N L   R G   V +AT
Sbjct: 252 AG--RTLMFTRTQLGAERVAQELVEVGVGAAALHGNKQQGLRTNVLAGFRQGAFPVLVAT 309

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ + D+ +V+H + S   +  +HRSGRT RAG  G  V +   +      R+  
Sbjct: 310 DVAARGLHIDDITMVVHVDPSDAVKEYVHRSGRTARAGAAGSVVTLALPHQLSATRRILA 369

Query: 362 EANVSVVW 369
            A V   W
Sbjct: 370 GAEVEPDW 377


>gi|254224718|ref|ZP_04918334.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
 gi|125622781|gb|EAZ51099.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V51]
          Length = 428

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 168/325 (51%), Gaps = 8/325 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q  ++   L  KDVL  A TGSGKT+A+GL L        +R   +    AL + PT
Sbjct: 46  TAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLL-------ERLKTSPEQQALVLVPT 98

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV   L  +    G+      GGV    ++  L    +I+V T GRL D +   G
Sbjct: 99  RELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLFD-LTQSG 157

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L ++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M SAT S  +   A+   + 
Sbjct: 158 LRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCSATFSDDLKLKAQQLMRA 217

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263
             +V+   EN  +  +     LV    +  A+V +L+ H     +VF   + +    TK 
Sbjct: 218 PTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKK 277

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L +       L G+ SQ +R  AL   ++G  +V IATD+ ARGI +  L +VI+ EL  
Sbjct: 278 LNKAGIVATVLHGDKSQAQRETALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPM 337

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           + E  +HR GRT RAG+ G+++ ++
Sbjct: 338 HAETYVHRVGRTARAGQHGIALSLV 362


>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
 gi|113649278|dbj|BAF29790.1| Os12g0481100 [Oryza sativa Japonica Group]
          Length = 832

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 176/349 (50%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 230 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL-- 287

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L + PTRELA QV   +E L   T +   + +GG+S   +   L++
Sbjct: 288 ---FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 344

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ 
Sbjct: 345 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 404

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILR 240
           ++FSAT++  I  L        VR+      ++ + +    V +  +   N  A++  L 
Sbjct: 405 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 464

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       I
Sbjct: 465 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 524

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +
Sbjct: 525 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFV 573


>gi|8825618|gb|AAF74278.2| vasa-like protein [Danio dangila]
          Length = 399

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/321 (34%), Positives = 174/321 (54%), Gaps = 11/321 (3%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +  AQTGSGKT AF L +   L+ +     +FS    P A+ +APTREL  Q+  E    
Sbjct: 1   MACAQTGSGKTAAFLLPILQRLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKF 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDE 156
              T V   V  GG++     R++  G +I+  TPGRL D I RGK + +S ++ +VLDE
Sbjct: 61  AYGTCVRPVVVYGGINTGFTIREVLKGCNILCATPGRLHDLIGRGK-IGLSKVRYLVLDE 119

Query: 157 ADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIAS 211
           AD MLD+GF  ++  ++ S    S ++R+ LMFSAT    I  +A ++ K D + + +  
Sbjct: 120 ADRMLDMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGV 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                SD++   V V    + + ++ +LR  G +  +VF  T+ S       L +     
Sbjct: 180 VGGACSDVEQTIVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKIST 239

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
            ++ G+  Q+ER  AL   R G+  V +AT VAARG+D+  ++ V++ ++ S+ +  +HR
Sbjct: 240 TSIHGDREQREREKALSDFRIGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHR 299

Query: 332 SGRTGRAGRKGMSV-FVIPQN 351
            GRTGR G  G +V F  P++
Sbjct: 300 IGRTGRCGNTGRAVSFFNPES 320


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 189/379 (49%), Gaps = 14/379 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +  P    E +  + Y   T +Q       L   +++  A+TGSGKT+AF L  
Sbjct: 102 IQFFEEVCFPDYCMEEIRRQRYSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILP- 160

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +           P+AL +APTRELA Q+ + +   +  +  V   C+ GG    ++
Sbjct: 161 AILHINGQQPLQRGEGPIALVLAPTRELAQQI-QSVANDFGSSAFVRNTCVFGGAPRSKQ 219

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL+ G  I++ TPGRL D ++    N+     +VLDEAD MLD+GF   I  +L    
Sbjct: 220 ASDLKRGVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIR 279

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++    +++NI S E   + +I     +    ++   + 
Sbjct: 280 PDRQILMWSATWPKEVRQLAEDFLGSYIQINIGSLELSANHNIRQYVEVCGEHEKSAKLK 339

Query: 237 NILRY-----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           ++L +     H     I+F +T+       + +      V ++ G+ SQ +R + L   R
Sbjct: 340 DLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFR 399

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GRA + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR   KG S     + 
Sbjct: 400 SGRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFTRK 459

Query: 352 MQRRAERL---FREANVSV 367
             R A  L    REAN +V
Sbjct: 460 NARCARALIDILREANQNV 478


>gi|145603147|ref|XP_361955.2| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
 gi|152032534|sp|A4QVP2|IF4A_MAGO7 RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|145011448|gb|EDJ96104.1| hypothetical protein MGG_04400 [Magnaporthe oryzae 70-15]
          Length = 396

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +      AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV----LQKID--TNVKQCQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + LQ+G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 185/360 (51%), Gaps = 16/360 (4%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALASTLLAENDRFSPA 72
           + + + T +Q       L  KD++  AQTGSGKT++F L     A A   L   D     
Sbjct: 145 KAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPALIHARAQIPLRSGD----- 199

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL +Q+    +       +      GGVS + ++RD+  G  +VVG P
Sbjct: 200 -GPIVLVLAPTRELCLQIKDVFDEYCRFFNMRCTAVYGGVSSYTQKRDISMGCEVVVGCP 258

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      L+ + +  +VLDEAD MLD+GF   ++ I+ ++   R+ LM+SAT    
Sbjct: 259 GRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDRQTLMWSATWPKE 318

Query: 193 ITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +  LA+NY K+ V++ I S E + +  I     ++   ++ N +   L     +  I+F 
Sbjct: 319 VRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHESLNEKKNEKVIIFA 378

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +T+         L+   ++ VA+ G+ SQ  R   +   R G   + IATDVAARG+D+ 
Sbjct: 379 NTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATDVAARGLDIK 438

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAG-RKGMS-VFVIPQNMQRRAE--RLFREANVSV 367
           ++ LVI+ +  +N E+ +HR GRT R    +G+S  F   +N     E  ++ +EAN  V
Sbjct: 439 NVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACAKELVKILKEANQDV 498


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 191/382 (50%), Gaps = 26/382 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           N+ + I   + + GY   T VQ+    I+N D   +D++  AQTGSGKT AF L + + L
Sbjct: 209 NLQETILVNVQKAGYDRPTPVQKYSIPIINAD---RDLMACAQTGSGKTAAFLLPVLTKL 265

Query: 63  L---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +    ++  FS    P A+ I PTREL  Q+  E       T +   V  GG SV  + R
Sbjct: 266 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 325

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  +  L   P
Sbjct: 326 AVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMP 385

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +K  R  LMFSAT    I  LA ++ ++D + + +       SD+    + V   D+ + 
Sbjct: 386 QKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSK 445

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ ++          +VF  T+        VL +  F   ++ G+  QQ+R  AL   RD
Sbjct: 446 LLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQAL---RD 502

Query: 293 GRARVC---IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  VC   +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +     
Sbjct: 503 FKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFFD 562

Query: 350 Q----NMQRRAERLFREANVSV 367
                N+ R   ++  EA   V
Sbjct: 563 NKKDANLARSLVKILSEAQQEV 584


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 192/350 (54%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPL 76
           GY   +++Q A +   +  KD++  A TGSGKT A+ + +   L+     + PA  SA  
Sbjct: 217 GYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLI-----YKPAAVSATR 271

Query: 77  ALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            + + PTRELA+QV   G++L    A     +AV  GG+++ ++ + L++   IVV TPG
Sbjct: 272 VIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAV--GGLNLRQQEQQLKSRPDIVVATPG 329

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSATISP 191
           RL DHIR     +I +L+ +V+DEAD ML+ GF+ ++  IL+  PK KR+ ++FSAT++ 
Sbjct: 330 RLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELIPKHKRQTMLFSATMNT 389

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRY---HGAKN 246
            I  L +      VR+ +    +  S +    V +   +  +   + ++LR         
Sbjct: 390 KIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPALLYHLLRLVDPQQQNR 449

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S +    R   VL     +V  L G L+Q++R  +++  R     V I TD+AAR
Sbjct: 450 IVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAAR 509

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + ++ Q R+
Sbjct: 510 GLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGESNQDRS 559


>gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris]
          Length = 406

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 433

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 189/347 (54%), Gaps = 14/347 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +A+ + G+   T +Q   +   +  +D+L SA TG+GKT++F       +L  ++  
Sbjct: 11  TIEQAIIQLGFKEPTEIQTQGIPVLMDGEDLLASAPTGTGKTLSFCAPAVQHILDRDE-- 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +  +AP AL +APTRELA Q+   ++ L   T +   + +GG     +++ L     I+V
Sbjct: 69  ASTNAPKALILAPTRELARQIFNLVKELLIHTRIQPQLIVGGTPYGMQQQQLSEDCDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +    + L++S +   V+DEAD MLD+GF D I  ++   PK+R+  M SAT+
Sbjct: 129 ATPGRLKELDDKQWLDLSDVSYFVIDEADRMLDMGFADTITALVKELPKERQTAMLSATL 188

Query: 190 S-PAITTLAKNYQK---DAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV-NILRYH 242
               +  LA    K   +A+++N ++     Q   I YR   V       AIV ++L+  
Sbjct: 189 DGDKLGQLADKIFKQTPEAIQINDSTRTIPSQIKQIAYR---VDDDAHKEAIVKHLLKQE 245

Query: 243 GAKNAIVFCSTRASVSRF-TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G + A++F S R  V  +  K+ A H+     L G + Q +RS  ++ M+ GR +V +AT
Sbjct: 246 GVQQALLFVSNRDHVDVWVNKIRALHIM-CSGLHGVMKQGDRSEHMKQMQKGRLQVLVAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           DVAARGIDLP++  VI+  L    ++ +HR+GR  R G +G  + +I
Sbjct: 305 DVAARGIDLPEINTVINLRLPQKSDSYVHRAGRASRDGNEGTCISLI 351


>gi|119492517|ref|XP_001263624.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
 gi|134034146|sp|A1D7N3|IF4A_NEOFI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|119411784|gb|EAW21727.1| eukaryotic translation initiation factor 4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 398

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P      A
Sbjct: 44  GFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKL-------DPNVKGCQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  + + LQ G  +VVGTPGR+ D
Sbjct: 97  LILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L   +LK  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 337 INYDLPANRENYIH 350


>gi|115384944|ref|XP_001209019.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
 gi|114196711|gb|EAU38411.1| eukaryotic initiation factor 4A [Aspergillus terreus NIH2624]
          Length = 419

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++          +  P   A  A
Sbjct: 65  GFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ-------KIDPNLKACQA 117

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG ++  + + LQ G  IVVGTPGR+ D
Sbjct: 118 LIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQD 177

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 178 MIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVVLLSATMPQDVLEVT 237

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 238 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 297

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 298 VDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 357

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 358 INYDLPANRENYIH 371


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 193/379 (50%), Gaps = 13/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+++  +  + G+V  T +Q     P L+ +D++  AQTGSGKT+++ L      +  
Sbjct: 157 QLPRLLHASYCQSGFVEPTPIQSQGW-PMLKGRDLIGIAQTGSGKTLSY-LLPGLVHVGA 214

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+  E     + +        GG     + RDL+ G 
Sbjct: 215 QPRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGV 274

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 275 EIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYW 334

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYH 242
           SAT    +  LA+ + ++  +V I S   + ++   + ++  +SD +   +++  +    
Sbjct: 335 SATWPREVEALARQFLQNPYKVIIGSPELK-ANHSIQQIVEVISDHESIQDSVKLLSDLM 393

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATD
Sbjct: 394 DGSRILIFLQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATD 453

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN--MQRRAERL 359
           VAARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  F    N    R   ++
Sbjct: 454 VAARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKI 513

Query: 360 FREANVSVVWEPAPSVEAI 378
            REA   V     P++E++
Sbjct: 514 LREAGQVV----NPALESM 528


>gi|268566495|ref|XP_002639737.1| Hypothetical protein CBG12465 [Caenorhabditis briggsae]
 gi|187029586|emb|CAP31441.1| hypothetical protein CBG_12465 [Caenorhabditis briggsae AF16]
          Length = 542

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 177/324 (54%), Gaps = 7/324 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  LT +Q   ++P L  KDVL SA+TGSGKT+AF L     L   N  +   +    +
Sbjct: 86  GFTTLTEIQAKTIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLN--WKQHNGTGVI 143

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTREL++Q    L  L   + +   + +GG +   E+  L  G  I+V TPGRL DH
Sbjct: 144 IVSPTRELSMQTYGVLTELLEGSNLTFGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDH 203

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++     + +LK +++DEAD +LD+GF  +++ +L   PK+R+ ++FSAT SP +  L K
Sbjct: 204 LQNDNFLVRNLKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVK 263

Query: 199 -NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
                + VRV++ +E  + + ++   +  +VA SD R   +   L+ +  K  +VF S+ 
Sbjct: 264 LALHSNPVRVSV-NEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSC 322

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            SV    ++L       +++ G+  QQ+R++         + + + TDVAARG+D+P ++
Sbjct: 323 NSVKFHHELLNYIDVPCMSIHGKQKQQKRTSTFFTFCQAESGILLCTDVAARGLDIPAVD 382

Query: 315 LVIHAELSSNPENLLHRSGRTGRA 338
            ++  +    P   +HR GRT R 
Sbjct: 383 WIVQYDPPDEPREYIHRVGRTARG 406


>gi|158292622|ref|XP_314012.3| AGAP005130-PA [Anopheles gambiae str. PEST]
 gi|157017078|gb|EAA09455.3| AGAP005130-PA [Anopheles gambiae str. PEST]
          Length = 531

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 176/346 (50%), Gaps = 30/346 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L+ +D + +A+TGSGKT AF L +   L  E       +A  AL + PT
Sbjct: 31  TPIQVECIPRILQGQDCIGAAKTGSGKTFAFALPILQKLSEE------PTANFALVLTPT 84

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
            ELA Q+  +           V V  GG     E + L+   HI+V  PGRL DH+ G  
Sbjct: 85  HELAHQIAEQFIVAGQPMNARVCVVTGGTDYLIESQQLEKRPHIIVAMPGRLADHLTGCN 144

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
             + + L+ +V+DEAD ML   F +D+  I    P KR+ L FSAT+        K++ K
Sbjct: 145 TYSFAALQFLVVDEADRMLCGSFDEDLMVINRFLPAKRQNLFFSATL--------KDFLK 196

Query: 203 DAVRVNIASENRQHSD---------IDYRAVLVALSDRDNAIVNILRYHGAK----NAIV 249
            ++   IA +  + S+         +D R +L A  DRD  +V  LR +       + ++
Sbjct: 197 TSIVFPIADDVFEWSEQSPVATVETLDQRYLLCADYDRDTVMVEALRKYKEDQEDASIMI 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +++      +  L    F  V L G L Q+ER  AL   +    R+ IATDVA+RG+D
Sbjct: 257 FTNSKKDCQILSMSLNSFGFSNVCLHGFLRQRERVAALNKFKSKHVRIMIATDVASRGLD 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--PQNMQ 353
           + D++LV++  L   P   +HR GRT RAGR GM++ ++  P++++
Sbjct: 317 IHDVQLVVNHRLPKKPIEYIHRVGRTARAGRAGMAISILRFPRDLE 362


>gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus]
          Length = 406

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKIFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|119946657|ref|YP_944337.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865261|gb|ABM04738.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 181/345 (52%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+   TS+Q   +   + E+D++ SA TG+GKT+AF L     L+ +  R    S
Sbjct: 15  AIAKMGHTRPTSIQTLAIPLAMDERDIMASAPTGTGKTLAFLLPAVQRLI-DFPRRKGGS 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELAVQ+      L   T +VV   IGGVS   +   + +   IV+ TPG
Sbjct: 74  ARI-LILTPTRELAVQISGVASALVEGTQLVVGNIIGGVSYQEQEEVITDSVDIVIATPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ I+  +  ++   +FSAT+    
Sbjct: 133 RLMEYIDSEAFDCREVETLILDEADRMLDMGFIKAMDRIVGETRWRKHTALFSATLEGRG 192

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---------RYHG 243
           +    ++  ++  ++      R+   I      V L+D     + +L             
Sbjct: 193 LREFCRDVLRNPAQLTAEVSRRESGKI---LQWVHLADSPEHKLQLLAAILEQPVKEEEQ 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF  TR  ++     LAE       L GE+ Q++R+ AL   R G   + IATDV
Sbjct: 250 QQKVIVFVKTRDRLTELVAQLAELQIPCTYLRGEMDQEKRNLALNQFRAGNINILIATDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+PD+  VI+ ++  + +  +HR GRT R G+KG+++ +I
Sbjct: 310 AARGIDVPDITHVINYDMPRSADIYVHRIGRTARGGKKGIAISLI 354


>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 398

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWVQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|297833410|ref|XP_002884587.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1097

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 181/333 (54%), Gaps = 11/333 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++ E LS  G+ + T +Q       L+ +D++  A+TGSGKT+  G  + + +L  + 
Sbjct: 445 PEILRELLSA-GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL--GYLIPAFILLRHC 501

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAH 126
           R    + P  L +APTRELA Q+  E    + ++  +   C+ GG     + ++L+ GA 
Sbjct: 502 RNDSRNGPTVLILAPTRELATQIQDEA-LRFGRSSRISCTCLYGGAPKGPQLKELERGAD 560

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++    +R+ LM++
Sbjct: 561 IVVATPGRLNDILEMKKIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEISPRRQTLMYT 620

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           AT    +  +A +   + V+VNI    E   +  I     +V   +++  +  ILR    
Sbjct: 621 ATWPKEVRKIASDLLVNPVQVNIGKVDELAANKAITQYVEVVPQMEKERRLEQILRSQER 680

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+K  I+FCST+       + +  H F  V + G+ +Q ER   L   R G++ + IATD
Sbjct: 681 GSK-VIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLSQFRSGKSCILIATD 738

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           VAARG+D+ D+ +VI  +  +  E+ +HR GRT
Sbjct: 739 VAARGLDIKDIRVVITYDFPTGVEDYVHRIGRT 771


>gi|145232875|ref|XP_001399810.1| ATP-dependent RNA helicase dbp8 [Aspergillus niger CBS 513.88]
 gi|152013493|sp|A5AA68|DBP8_ASPNC RecName: Full=ATP-dependent RNA helicase dbp8
 gi|134056731|emb|CAK44220.1| unnamed protein product [Aspergillus niger]
          Length = 522

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 195/361 (54%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +IG +L+       T++Q+A +   L  +D +  ++TGSGKT+AF + +        D
Sbjct: 101 PWLIG-SLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQKW--AED 157

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F        L + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 158 PF----GIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRPQAVALAQRPHV 213

Query: 128 VVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP--K 178
           V+ TPGRL DHI   G +    +  ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 214 VIATPGRLADHINTSGSDTIRGLKRVRMVVLDEADRLLAPGHGSMLPDVETCLSALPPSS 273

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSDRD 232
           +R+ L+F+AT++P   A+ ++ +   K  + V  I++EN       +    + V ++ R+
Sbjct: 274 ERQTLLFTATLTPEVRALKSMPRPSTKPPIFVTEISTENNASIPPTLKQTYLKVPMTHRE 333

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     + +K AI+FC+   +     ++L     +V +L   L Q ER+  L  
Sbjct: 334 -AFLHVLLSTEANASKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNANLAR 392

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVA+RG+D+P +ELV++ ++  NP++ +HR GRT RAGRKG SV ++ 
Sbjct: 393 FRASAARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRTARAGRKGESVTLVG 452

Query: 350 Q 350
           Q
Sbjct: 453 Q 453


>gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens]
          Length = 483

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 176/346 (50%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +       +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|143454043|sp|Q0INC5|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
 gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 176/349 (50%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 200 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL-- 257

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L + PTRELA QV   +E L   T +   + +GG+S   +   L++
Sbjct: 258 ---FRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ 
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 374

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILR 240
           ++FSAT++  I  L        VR+      ++ + +    V +  +   N  A++  L 
Sbjct: 375 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 434

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       I
Sbjct: 435 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 494

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +
Sbjct: 495 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFV 543


>gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
          Length = 398

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/327 (31%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 30  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 90  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 143

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 144 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 203

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 204 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 263

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 264 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 323

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 324 LARGIDVQQVSLVINYDLPTNRENYIH 350


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 173/331 (52%), Gaps = 3/331 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGIPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  +      +R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSVASHVRPERQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASV 257
              D +RV        + DI     +  +  ++ N + + ++ +  + + ++F + +A+ 
Sbjct: 452 ILIDPIRVVQGDIGEANEDITQIVEIFASGPNKWNWLTSRLVEFTSSGSVLLFVTKKANA 511

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +    +  L G++ Q ER+  +   + G   V +ATDVAARG+D+P ++ VI
Sbjct: 512 EELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVLVATDVAARGLDIPSIKTVI 571

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +++ + +   HR GRTGRAG KG++  ++
Sbjct: 572 NYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 399

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 187/338 (55%), Gaps = 8/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  IVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEMLSKGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
               A   + + PTRELA+QV + +   YAK   + ++ + GGVS   ++  L  G  I+
Sbjct: 72  KRIRA---VILTPTRELAIQVEQNITK-YAKFLNLTSLAMYGGVSYQHQKDRLIEGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FSAT
Sbjct: 128 VATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNA 247
           +S  +  LAK+   +A  ++IA  +   ++I+   V V   DR +A+++ +   G    A
Sbjct: 188 LSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTVD-KDRKSALLSHMITDGEWDQA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+   ++    L +   Q  A     SQ  R   L   + GR +  +AT VAARG
Sbjct: 247 LIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGRLKYLVATGVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+ +L  V++ ++    ++ +HR GRTGRA   G ++
Sbjct: 307 IDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAI 344


>gi|301775045|ref|XP_002922942.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Ailuropoda
           melanoleuca]
 gi|281344914|gb|EFB20498.1| hypothetical protein PANDA_011982 [Ailuropoda melanoleuca]
          Length = 669

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 187/345 (54%), Gaps = 8/345 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P +
Sbjct: 192 AIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF--LIPAVELIVKLKFMPRN 249

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TPG
Sbjct: 250 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPG 309

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT +  
Sbjct: 310 RLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRK 369

Query: 193 ITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +V
Sbjct: 370 VEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMV 429

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S+  SV    ++L      V+A+ G   Q +R+       +  + + + TDVAARG+D
Sbjct: 430 FFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGLD 489

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 IPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 534


>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 396

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 178/345 (51%), Gaps = 5/345 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQRK- 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 70  ---KRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 127 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 187 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 247 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 307 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 351


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 191/382 (50%), Gaps = 26/382 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           N+ + I   + + GY   T VQ+    I+N D   +D++  AQTGSGKT AF L + + L
Sbjct: 219 NLQETILVNVQKAGYDRPTPVQKYSIPIINAD---RDLMACAQTGSGKTAAFLLPVLTKL 275

Query: 63  L---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +    ++  FS    P A+ I PTREL  Q+  E       T +   V  GG SV  + R
Sbjct: 276 VESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVGYQIR 335

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  +  L   P
Sbjct: 336 AVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSLPGMP 395

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +K  R  LMFSAT    I  LA ++ ++D + + +       SD+    + V   D+ + 
Sbjct: 396 QKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKDKRSK 455

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ ++          +VF  T+        VL +  F   ++ G+  QQ+R  AL   RD
Sbjct: 456 LLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQAL---RD 512

Query: 293 GRARVC---IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  VC   +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +     
Sbjct: 513 FKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFFD 572

Query: 350 Q----NMQRRAERLFREANVSV 367
                N+ R   ++  EA   V
Sbjct: 573 NKKDANLARSLVKILSEAQQEV 594


>gi|165934071|gb|ABY74563.1| DEAD box polypeptide 18 (predicted) [Callithrix jacchus]
          Length = 623

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  +F P 
Sbjct: 145 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LKFMPR 202

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 203 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 262

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 263 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 322

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 323 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 382

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 383 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 442

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 443 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 488


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 179/334 (53%), Gaps = 10/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + +   L  +           AL
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQVLELKRKDLQ------AL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCD 137
            ++PTRELA Q  + +  L     V      GG ++  + + +Q+ G H+V GTPGR+ D
Sbjct: 96  VLSPTRELASQSCQVVSNLGDYLNVKAFALTGGKALKDDLKRIQSSGCHVVSGTPGRVLD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            I+ + +   +++ +VLDEADE+L   LGF+  I  I    P   ++++ SAT+S  I  
Sbjct: 156 LIKRQVVQTRNVQVLVLDEADELLSETLGFKQQIYDIFARLPPGCQVVVVSATMSRDILE 215

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           + K +  D V++ +  +      I    V V+  + + + + ++         ++FC+TR
Sbjct: 216 VTKKFMSDPVKILVKRDEISLEGISQYYVDVSKEEWKFDTLCDLYDSLTITQCVIFCNTR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   +K L +  F VV++ G++ Q++R   +   R G +RV I+TDV ARGID+  + 
Sbjct: 276 KKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFRTGHSRVLISTDVWARGIDVQQIS 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           LVI+ ++    EN +HR GR+GR GRKG++V  I
Sbjct: 336 LVINYDMPEIMENYIHRIGRSGRFGRKGVAVNFI 369


>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 355

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 180/341 (52%), Gaps = 5/341 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + ++++  G+   T +Q A +   L  KDV+ +A TGSGKT AF + +   LL  
Sbjct: 2   NLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLL-Y 60

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ       L   T + + + +GG+S+  +   L+   
Sbjct: 61  REKGKKAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRARP 120

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHIR      +  +  +VLDEAD ML  GF D++  I+ S P  R+ ++
Sbjct: 121 DIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTML 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++ ++  L K      VR+ +         +    V V     S+R   +V + + 
Sbjct: 181 FSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVALCKR 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  ++    +   V +    +   L G+LSQ++R  ALQ+ RDG+    +AT
Sbjct: 241 TFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFLMAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+A+RG+D+  +E +I+ ++       LHR GRT RAG++G
Sbjct: 301 DLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQG 341


>gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium DSM 319]
          Length = 439

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 191/352 (54%), Gaps = 17/352 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P +I EA+ + G+   T +QE ++   L+ + V+  +QTG+GKT A+ L L     
Sbjct: 9   FEFQPFLI-EAIKQLGFYQPTEIQERLIPSVLKGESVIGQSQTGTGKTHAYLLPLL---- 63

Query: 64  AENDRFSPASAPLALAI-APTRELAVQVGRELEWLY---AKTGVVVAVC-IGGVSVHRER 118
              ++  P    + + I APTRELA Q+ +E+  L    A+   + A C IGG    R  
Sbjct: 64  ---EKVDPKKEEVQVVITAPTRELASQIYQEVLKLTKHSAEGEEISAKCFIGGTDKQRTI 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +VVGTP RL D +  K L +   KA+V+DEAD MLD+GF +D++ +  + P+
Sbjct: 121 DKLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLMLDMGFLEDVDRLASNMPE 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIV 236
           K +ML+FSATI   +    K Y ++    +++ +    + +++  VLV L  R+    + 
Sbjct: 181 KLQMLVFSATIPEKLKPFLKKYMENPKFTHVSPKQAAAAKLEH--VLVPLRHRNKFKLLH 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +    AIVF +T+         L     +V  + G+LS ++R   ++ + +   +
Sbjct: 239 DMLISYNPYLAIVFTNTKKMADEVADDLLSKGLKVGRIHGDLSPRDRKKMMKQINNLEFQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++  + 
Sbjct: 299 YVVATDLAARGIDIEGISHVINFELPSDLDFYIHRVGRTARAGHSGIAATIF 350


>gi|302653108|ref|XP_003018385.1| hypothetical protein TRV_07579 [Trichophyton verrucosum HKI 0517]
 gi|291182028|gb|EFE37740.1| hypothetical protein TRV_07579 [Trichophyton verrucosum HKI 0517]
          Length = 948

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/325 (32%), Positives = 184/325 (56%), Gaps = 15/325 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   + +F P 
Sbjct: 168 KAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--RSLKFKPR 225

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AL I PTRELA+Q   V REL   +++T     V IGG +   E   L  G ++++
Sbjct: 226 NGTGALIITPTRELALQIFGVARELMEHHSQT---YGVVIGGANRRAEAEKLNKGVNVLI 282

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
           GTPGRL DH+R  +G    +LK +V+DEAD +L++GF D++  I+   PK+ R+ ++FSA
Sbjct: 283 GTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKEDRQTMLFSA 342

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS +D      ++     R   + + L+ + 
Sbjct: 343 TQTTKVEDLARISLKPGPLYINV-DHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLKKNA 401

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I TDV
Sbjct: 402 KKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLICTDV 461

Query: 304 AARGIDLPDLELVIHAELSSNPENL 328
           AARG+D+P ++ ++  +   +P  +
Sbjct: 462 AARGLDIPAVDYIVQLDPPDDPSEV 486


>gi|160331247|ref|XP_001712331.1| eif4A [Hemiselmis andersenii]
 gi|159765778|gb|ABW98006.1| eif4A [Hemiselmis andersenii]
          Length = 401

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 177/337 (52%), Gaps = 8/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + + G+   + +Q+  + P + +KD++  AQ+G+GKT  F +     +  + D F 
Sbjct: 33  ILQGIFKYGFEKPSLIQQKGILPIIHKKDLIAQAQSGTGKTATFVIGTLQNV--QYDVFQ 90

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
                  + + P+RELA Q+    E +   T +    CIGG  +  +R+ L     HI++
Sbjct: 91  VQ----CMVVCPSRELANQIKIVYESIGKFTKIRTQECIGGTKIKDDRQLLFSKKPHIII 146

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D +  + L    L+ +V+DEADEM   GF+  I  I    PK+ ++ +FSAT+
Sbjct: 147 GTPGRLFDILSIEKLLSQKLEYLVIDEADEMFSRGFKVQIFRIFKYLPKECKIGLFSATL 206

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAI 248
              I  + + +  D VR+ +  E      I    + +   + +  A+ +I R   A+ +I
Sbjct: 207 PKEILQVIELFISDPVRILVKKEELTLEGIKQFYIPIEKEEWKLEALFDIYRSIKAEQSI 266

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           ++ + R  V      +  + F +  + GE+ Q ERS  ++  R G+ RV I TD+ +RGI
Sbjct: 267 IYVNARKKVEWLANKMKLNDFSIAFIHGEMEQSERSETMKNFRFGKFRVLITTDLLSRGI 326

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  VI+ +L    E+ +HR GR+GR G+KG+++
Sbjct: 327 DIEKVNFVINYDLPQYKESYIHRIGRSGRFGKKGVAI 363


>gi|326923057|ref|XP_003207758.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Meleagris
           gallopavo]
          Length = 703

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +S+ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 225 KGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAF--LIPAVELIYKLKFMPR 282

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTRELA+Q    L+ +         + +GG +   E + L NG +I+V TP
Sbjct: 283 NGTGVIILSPTRELAMQTYGVLKEVMNHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 342

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 343 GRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSATQTR 402

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +N++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 403 KVEDLARISLKKEPLYVGV-DDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 461

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 462 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARG 521

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 522 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 568


>gi|301613462|ref|XP_002936241.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like [Xenopus
           (Silurana) tropicalis]
          Length = 695

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 189/381 (49%), Gaps = 40/381 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++    +     N TSVQ+  +   L  +DVLV +QTGSGKT+A+G+ L  +L     
Sbjct: 141 PHLVSTINTVMNMTNTTSVQKQTIPALLAGRDVLVRSQTGSGKTMAYGVPLVQSLQGVTP 200

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 201 KIQRSDGPYALVLVPTRELALQSFSTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 260

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRM 182
           I++ TPGRL DHIR  K ++ +  + +V+DEAD +LD+GF  D+  I   L+S  + R+ 
Sbjct: 261 ILISTPGRLLDHIRSTKSIHFTRARWLVVDEADRILDMGFEKDVTAILNALNSQCQHRQN 320

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASE-NRQ----------HSDIDYRAVLVALSDR 231
           ++ SAT+SP +  LA     D V V IA + NR+            D D     +     
Sbjct: 321 VLLSATLSPGVARLADISLNDPVSVTIAEDTNREDKHGGKPKEDKKDGDSSCFAMPEKLH 380

Query: 232 DNAIVN-------------ILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQ------ 270
            +A+V              + ++  AK    IVF  +   V  +  +L++ L        
Sbjct: 381 QHAVVAPSKLKLVTLAAFILGKWKCAKKPKMIVFFPSCELVEFYHSLLSKVLTMGDSAMG 440

Query: 271 ---VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
               + L G + Q+ER+   Q     +A + + TDVAARG+DLP +  ++     ++   
Sbjct: 441 PDDFLRLHGNMEQEERTEVFQQFTHCQAGILLCTDVAARGLDLPQVTWIVQFSAPASAAE 500

Query: 328 LLHRSGRTGRAGRKGMSVFVI 348
            +HR GRT R G +G S+ ++
Sbjct: 501 YIHRVGRTARLGAQGSSLLIL 521


>gi|297739789|emb|CBI29971.3| unnamed protein product [Vitis vinifera]
          Length = 364

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 169/322 (52%), Gaps = 15/322 (4%)

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A+  R +    PLAL ++PTREL+ Q+  E      +TGV V V  GG  ++++ R+L+
Sbjct: 5   FAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPINQQLRELE 64

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPK 178
            G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++      P 
Sbjct: 65  RGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG 124

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA ++    + + +         I  R   V  SD+ + ++++
Sbjct: 125 VRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESDKRSHLMDL 184

Query: 239 LRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L    A  A       +VF  T+         L  + F    + G+ +QQER +AL+  +
Sbjct: 185 LHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREHALRSFK 244

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N
Sbjct: 245 SGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNEN 304

Query: 352 ---MQRRAERLFREANVSV-VW 369
              + R    L +EAN  V  W
Sbjct: 305 NSSLARPLADLMQEANQEVPAW 326


>gi|190406571|gb|EDV09838.1| ATP-dependent rRNA helicase SPB4 [Saccharomyces cerevisiae RM11-1a]
 gi|323355178|gb|EGA87005.1| Spb4p [Saccharomyces cerevisiae VL3]
          Length = 606

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 184/356 (51%), Gaps = 23/356 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I   L   G+  +T VQ + +      KDV+V + TGSGKT AF + +   ++ E     
Sbjct: 18  IRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTS 77

Query: 68  RFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F  A    +L IAPTREL+ Q+       LE   +    +    + G +    R D   
Sbjct: 78  KFKKAHFH-SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSS 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   I++GTPGR+ D ++   +  S    VV+DEAD +LD+ F  D E IL   PK+
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+  A + + K   ++ VR+ + S+N+  S +     +V  +++   +V+IL
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSIL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMM 290
             +  K  IV+  T  SVS F   + ++L          +V +L G+L    R+  L   
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFI-QYLGKRNILVNEVEVFSLHGKLQTSARTKTLTAF 315

Query: 291 RDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D  +  V   TDVAARGID+PD++LVI  +  +N +  +HR GRTGRA R G ++
Sbjct: 316 TDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 175/337 (51%), Gaps = 7/337 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + VQ  ++   L +KD+LV ++TG+GK+ AF + + + +    ++         L I PT
Sbjct: 26  SQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPICNKIKKLENKLK------VLVIVPT 79

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV  E+E +     +  +V +G   +  +  +L+ G +++V TPGR+ DHI    
Sbjct: 80  RELALQVKEEIEKIGRLKMIKCSVILGKEPLKNQILELKQGTNVIVATPGRMIDHISRGS 139

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +++  L   ++DE D+M   GF  DI  I+ + P       FSAT+   +  +   Y KD
Sbjct: 140 VDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPNTSCKAFFSATVDNDLKEICNGYMKD 199

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
              + +  E    + I+ + + V   + + +A+ N+L     +  I+F +T+       +
Sbjct: 200 YEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKNVLYKFKPETTIIFTNTKKQAEVLYE 259

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            +    F V  + G++SQ+ R   +   +     + I++D+ +RGI + D+ LVI+ ++ 
Sbjct: 260 NMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNILISSDIISRGIHIDDVSLVINYDIP 319

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           S+ E  +HR GRTGRAG+ G ++ ++  N  R  E +
Sbjct: 320 SDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFENI 356


>gi|256083176|ref|XP_002577825.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663158|emb|CAZ34063.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 590

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/364 (31%), Positives = 191/364 (52%), Gaps = 43/364 (11%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q   + P L  ++++  A+TGSGKT A+ L +   LL +   F       AL + PT
Sbjct: 54  TAIQVLSIPPALEGRNLVALAETGSGKTGAYALPIIQKLLRDAHPF------FALILVPT 107

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCDHIR-G 141
           RELA QV  +   L    G+  A+ +GGV + ++   ++ +  H+V+ TPGR  DH++  
Sbjct: 108 RELAAQVQTQFHALGKTIGLSTALLVGGVPITQQSDLMKVSPPHVVIATPGRFVDHLKKT 167

Query: 142 KG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           KG   L  S+L+ +V+DEAD ML + F   IE IL   P +R+  +FSAT++  +  L +
Sbjct: 168 KGFDELKFSNLRILVIDEADRMLGVDFESVIEKILCIVPAQRQTFLFSATMTDKVGKLQR 227

Query: 199 NYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRY---------------- 241
               D VRV+   S+ +  +++     LV   + D+ +V  LR                 
Sbjct: 228 ASILDPVRVSTRKSKFQSLTNLRQYVHLVPQCEIDSYLVYFLRVALCPEIQVPGLDLIKL 287

Query: 242 --------------HGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNA 286
                           + + IVF  TR + +R   +L + L Q V+AL+G++ Q +R  A
Sbjct: 288 QSTSTENLDCANQSFMSTSVIVFTRTRVASNRLNLLLRQFLRQPVIALNGDMPQAQRLGA 347

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   +  +  V +ATDVA+RG+D+P + LV++ ++  + +  +HR GRT RAGR G ++ 
Sbjct: 348 LHKFKRTQGAVLVATDVASRGLDIPQVGLVVNYDVPLDAKTYMHRVGRTARAGRLGCALT 407

Query: 347 VIPQ 350
           ++ Q
Sbjct: 408 LLTQ 411


>gi|229086855|ref|ZP_04219016.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
 gi|228696459|gb|EEL49283.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
          Length = 436

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 181/348 (52%), Gaps = 12/348 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI-AP 82
           T +Q+ I     +   V+  +QTGSGKT A+       LL   +R +     + L I AP
Sbjct: 28  TEIQKKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINANREEVQLVITAP 80

Query: 83  TRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           TRELA Q+ +E   L    A+  ++ A C IGG    R    L+   H+VVGTPGR+ D 
Sbjct: 81  TRELAQQIYQEIVKLTKFCAEEQMITARCLIGGTDKQRSIEKLKKQPHVVVGTPGRIKDL 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSATI   +    K
Sbjct: 141 VEEQALFVHKATTIIVDEADLMLDMGFIQDVDKIAARMPKNLQMLVFSATIPQKLKPFMK 200

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            Y ++   ++I  +     +I++  V     ++   + N+L       AIVF +T+    
Sbjct: 201 KYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIELVKNMLLQFKPYLAIVFTNTKKMAD 260

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARGID+  +  VI+
Sbjct: 261 EVANGLTERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAARGIDIEGISHVIN 320

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
            EL S+ +  +HR GRT RAG  G++V +     +   + L ++ N++
Sbjct: 321 YELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEAIDSLEKQRNIT 368


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 186/350 (53%), Gaps = 19/350 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +   + GY N T +QE  + P LR++ V+ +A+TGSGKT  F   +   L    D F 
Sbjct: 13  IQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPILQDL--AKDPF- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+ +   RELA+Q+  +     +   + V+  +GGV  +++  +L+   HIVVG
Sbjct: 70  ---GVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQLSELERIPHIVVG 126

Query: 131 TPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR  D I    +    I ++K +VLDEAD + +    +DI+ IL+  P+++++++ +A
Sbjct: 127 TPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEFIPQEKQIILATA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASE----NRQH---SDIDYRAVLVALSDRDNAIVNILR 240
           TI+        N   + ++ N+  E    N+Q      +  + VLV    +D   +N+L 
Sbjct: 187 TINDDFNDKKLN---EILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVKDQNFINLLN 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F +   +      +L +  F   +L   L Q +R + L+  +   A + +A
Sbjct: 244 KFKGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFKSQAANILVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           TDVA+RG+D+P ++LVI+ ++  N ++ +HR GRT R G++G+++ ++ Q
Sbjct: 304 TDVASRGLDIPTVDLVINYDIPKNSDDYIHRVGRTARKGKRGLAISIMTQ 353


>gi|242240212|ref|YP_002988393.1| ATP-dependent RNA helicase SrmB [Dickeya dadantii Ech703]
 gi|242132269|gb|ACS86571.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 446

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 12/377 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL++ G+   T++Q A + P +  +D+L SA TG+GKT A+ L     LL    + S  
Sbjct: 17  EALNDMGFKRPTAIQAAAIPPAMDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P  L + PTRELA+QV  +   L A T + +A   GGV+             +VV T 
Sbjct: 75  GPPRILILTPTRELAMQVADQARTLAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATT 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+   
Sbjct: 135 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGN 194

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
           A+   A+    + V V      R+   I    YRA    +  +   + ++LR      +I
Sbjct: 195 AVQDFAERLLNEPVSVEADPSRRERKKIQQWYYRA--DNIEHKTALLCHLLRQPDVTRSI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   R  V      L +       L GE+ Q +R+ A+  + +GR  V +ATDVAARG+
Sbjct: 253 IFVRKRERVHELVDWLRQAGIDACYLEGEMVQAKRNEAITRLSNGRVNVLVATDVAARGL 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN---- 364
           D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +      ++ R  N    
Sbjct: 313 DILDISHVFNFDMPRTADIYLHRIGRTGRAGRKGCAISLVEAHDHLLLGKVSRYLNEPLK 372

Query: 365 VSVVWEPAPSVEAIRER 381
           + VV E  P+  A  E+
Sbjct: 373 MRVVEELRPTTRAPSEK 389


>gi|223998424|ref|XP_002288885.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 518

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/421 (30%), Positives = 210/421 (49%), Gaps = 18/421 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   +   ALS  G+  +T +Q   +   L  KD++ +A+TGSGKT+AF L +   
Sbjct: 22  FASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGAAKTGSGKTLAFLLPVVEL 81

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERR 119
           L   N +F   +   A+ I+PTRELA+Q+    + L    K      + IGG +   E  
Sbjct: 82  L--HNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTSGKHHQTYGLIIGGANRRTEAE 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +IV+ TPGRL DH++  KG    +L A V+DEAD +L+ GF DD+  I+ + PK
Sbjct: 140 RLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRSIIKALPK 199

Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNA 234
           +R+ ++FSAT +  +  LA+     K AV V + +E      + ++   V V    R   
Sbjct: 200 QRQTMLFSATQTKKVEDLARTAIDPKSAVYVEVPNETNLATAAGLEQGYVTVPSDQRFLL 259

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV   +++L      V+ + G   QQ+R+          
Sbjct: 260 LFTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQT 319

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS---VFVIPQN 351
               + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R G KG     +F+ P+ 
Sbjct: 320 TGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTAR-GEKGKGRALLFLTPE- 377

Query: 352 MQRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +    R  + A V++     P  + A  +   QR+++   +L+    D  +   +    
Sbjct: 378 -ETGFLRYLKAAKVTLNEYEFPMTKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYTS 436

Query: 411 H 411
           H
Sbjct: 437 H 437


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 178/339 (52%), Gaps = 3/339 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L  RG+   TS+Q   +   L  +D++  A TGSGKT+AF +     +LA+ 
Sbjct: 108 LPAPLMSHLRLRGFKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCLLHVLAQP 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +A  A+ ++PTRELA Q   E + +++      A  +GG  +  + R ++NG++
Sbjct: 168 PTGQYEAA--AVILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAIKNGSN 225

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGR  D +     NI  +  +V+DEAD M DLGF   +  I +   K R+ LMFS
Sbjct: 226 VIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQTLMFS 285

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAK 245
           AT    +  +A+   ++++ + +   N    +I+   ++    ++ N+++ IL  Y    
Sbjct: 286 ATFPHTVERIARKLLQNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQG 345

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +T+         L +  + V  L G +   +R++ L   R+GR  V + T V A
Sbjct: 346 QALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGA 405

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           RGID+  +  VI+ +   +  + +HR GRTGRAG+KG +
Sbjct: 406 RGIDIASIICVINYDAPDHEADYVHRVGRTGRAGKKGYA 444


>gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 175/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 20  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI--E 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D      A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 78  LD----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 133

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 134 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 194 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 254 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 314 LARGIDVQQVSLVINYDLPTNRENYIH 340


>gi|169615935|ref|XP_001801383.1| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
 gi|182676441|sp|Q0UAT0|FAL1_PHANO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|160703076|gb|EAT81633.2| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
          Length = 374

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 171/336 (50%), Gaps = 38/336 (11%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-LASTLLAENDRFSPASAPLA 77
           GY + ++VQ   +    + +D +  AQ+G+GKT  F ++ L S ++   D  +       
Sbjct: 44  GYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQSVIMGLGDYMN------- 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
                                    V    CIGG +V  + R L  G H+V GTPGR+ D
Sbjct: 97  -------------------------VQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVAD 131

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   ++++ SAT+   +  + 
Sbjct: 132 MIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMT 191

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
             +  D VR+ +  +      +  +   +A+   +   + + ++        A++FC+TR
Sbjct: 192 TKFMTDPVRILVKRDELTLEGL--KQYFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTR 249

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  + E  F V ++ G++ Q+ER + +Q  R   +RV I+TDV ARGID+  + 
Sbjct: 250 RKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVS 309

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           LVI+ +L SN EN +HR GR+GR GRKG+++  + Q
Sbjct: 310 LVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQ 345


>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
           (Silurana) tropicalis]
          Length = 760

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 213/422 (50%), Gaps = 36/422 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S   +   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 189 NLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLERLI-- 246

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L   T V   + +GG+ V  +   L++
Sbjct: 247 ---YKPREAPVTRVLVLVPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRS 303

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  +++ TPGRL DH+      ++  ++ ++LDEAD MLD  F + ++ I+     +R+ 
Sbjct: 304 GPDVLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQT 363

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           L+FSAT+S  +  LA    ++ VR+ + S    ++D+    R   V +      DR+   
Sbjct: 364 LLFSATMSEEVKDLASVSLRNPVRIFVNS----NTDVAPFLRQEFVRIRPNREGDREAVA 419

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D + 
Sbjct: 420 CALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQI 479

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  +    ++ +HR GRT RAG+ G SV ++ +  ++ 
Sbjct: 480 DILVATDVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKM 539

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVL-LAKHD 412
            + + ++A   V               A+ I QD +  F + I   EK++  VL L K +
Sbjct: 540 LKEIVKKAQAPV--------------KARVIPQDVISKFREKITKSEKEIYAVLQLEKEE 585

Query: 413 PE 414
            E
Sbjct: 586 KE 587


>gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Pongo
           abelii]
          Length = 483

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 175/346 (50%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P  R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +       +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 169/328 (51%), Gaps = 7/328 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   +  +DV+  AQ+G+GKT    +A    L  +            L
Sbjct: 49  GFERPSAIQQRAIKQIILGRDVIAQAQSGTGKTATLAIASLQVLDIQ------LRDTQVL 102

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+ + +  L     V    C GG +V  + + L  G HIV GTPGR+ D 
Sbjct: 103 ILSPTRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKKLDYGQHIVSGTPGRVFDM 162

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K ++LDEADEMLD GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 163 IKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLSATMPHDILEMTS 222

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D VR+ +  +      I    V V   + +   + ++        +++FC+TR   
Sbjct: 223 KFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTVTQSVIFCNTRRKA 282

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 + +  F V  + G++ Q+ER   ++  R   +RV I TD+ ARGID+  + +VI
Sbjct: 283 EWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSSESRVLITTDLLARGIDVQQVSMVI 342

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  L +N E  +HR GR+GR GRKG+++
Sbjct: 343 NYGLPNNRELYIHRIGRSGRFGRKGVAI 370


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 8/329 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QEA +   L +KD+L  AQTG+GKT A+ L + S L  +N  + P      + ++PT
Sbjct: 7   TPIQEACIPAILNKKDILGVAQTGTGKTAAYLLPVLSLL--DNGGY-PKDKINCIIMSPT 63

Query: 84  RELAVQVGRELE----WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA Q+ + ++    +L   + V V     G    +E + L+ GA +++ TPGR   H+
Sbjct: 64  RELAQQIDQAMQGFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPGRFISHL 123

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               ++ S +   +LDEAD MLD+GF DDI  I    P   + +MFSAT+ P I TLA+ 
Sbjct: 124 SLGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKIETLART 183

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             K+   + +A  ++    I   A +     +   + ++      +  I+F   +  V  
Sbjct: 184 ILKNPETIKLAV-SKPAEKIKQSAYVCYEPQKLKIVTSLFNADNLQRVIIFSGKKDKVKD 242

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K L        A+  +LSQ ER   +   + G+  V +ATD+ +RGID+ D+ +VI+ 
Sbjct: 243 INKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVSRGIDIDDIRMVINY 302

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  + E+ +HR GRT RA R G ++ ++
Sbjct: 303 DVPHDVEDYIHRIGRTARADRDGKAITLV 331


>gi|317128337|ref|YP_004094619.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473285|gb|ADU29888.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 442

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 177/342 (51%), Gaps = 8/342 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE ++       DV+  +QTG+GKT AF L +   +  + +         A+  APT
Sbjct: 30  TEIQERLIPAIKNGSDVIGQSQTGTGKTYAFLLPILDQINEDENETQ------AVITAPT 83

Query: 84  RELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           RELA Q+  EL  L  +A+  +   + +GG    R    L+N  H++VGTPGR+ D I  
Sbjct: 84  RELASQLYYELNKLTSHAEKTIESQLVVGGTDRLRMMEKLKNKPHVIVGTPGRVADMIDK 143

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           + LN+  +  +V+DEAD+MLD+GF ++++          +ML+FSATI   +    + Y 
Sbjct: 144 QALNVREVNVLVVDEADQMLDMGFIEEVDRAASRMGDDLQMLVFSATIPEKLKPFLRKYM 203

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           K+   V +  ++     I +  +     DR   IV++ +      A++F + + +     
Sbjct: 204 KNPKHVEVQPKDVSPKKIKHWLIPDRDRDRKEIIVDVSKKLNPYLAVIFTNKKETADEVY 263

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           + L      V  + G +S ++R   ++ ++D   +  +ATD+ ARGID+  +  +I+ E+
Sbjct: 264 EELLNQGLNVDIMHGGISPRQRKKVMKKLQDAEIQFLVATDLVARGIDVEGISHIINFEI 323

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            +  E  +HR GRT RAG  G++V +  +N Q+   +L ++ 
Sbjct: 324 PTELEYYIHRVGRTARAGWDGIAVTIYGRNEQQSISKLEKQG 365


>gi|300778725|ref|ZP_07088583.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504235|gb|EFK35375.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 450

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 182/351 (51%), Gaps = 19/351 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I + L++      T +QE  L P L  +DV+  AQTG+GKT+A+ L +  T    
Sbjct: 10  DLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLLPVLKTW--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV   LE L       V    GG +++ ++    +G 
Sbjct: 67  --KYSKTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGVYGGKNINTQKLLFNDGC 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D      +++  ++ +++DE DEML+LGFR  +  I +   +KR+ ++F
Sbjct: 125 DILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQNILF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++ A+  +   Y  + V +++A        I+     V   +  N  +N+L Y    
Sbjct: 185 SATMTEAVDEMLDVYFANPVEISLAKSGTPLEKIEQIGYKV---ENFNTKINLLEYLLKN 241

Query: 246 NA-----IVFCSTRASVSR-FTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARV 297
           +A     ++F + +      FTK+  + LF  Q   +    SQ  R  A++   +   R 
Sbjct: 242 DADMSKVLIFNNNKKHADLLFTKI--DELFPEQFDVIHSNKSQNYRLKAMKRFENEEIRG 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFV 347
            I TDV ARG+D+ ++  VI+ E    PE  +HR GRTGRA ++G + VFV
Sbjct: 300 LITTDVMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKEGKALVFV 350


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/324 (32%), Positives = 175/324 (54%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPASAPLALAIAP 82
           +++Q   +   ++ +DV+  AQ+G+GKT    +A++S  L + N R +       L ++P
Sbjct: 49  SAIQARAIKQIVKGRDVIAQAQSGTGKTSL--IAISSLQLTDINLRETQV-----LILSP 101

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA Q  + +  L     V    CIGG S+ ++ + L  G HIV GTPGR+ D ++ +
Sbjct: 102 TRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQHIVSGTPGRVFDMMQRR 161

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L    +  +VLDEADEMLD GF++ I  I    P   ++++ SAT+   I  +   +  
Sbjct: 162 NLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILISATLPHDILEMTSKFMT 221

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           + +R+ +  +      I    V V   + + + + +I         ++FC+T+  V   T
Sbjct: 222 NPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDIYDTVTVTQVVIFCNTKRKVEWLT 281

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           + + E+ F V ++ G++ Q ER    +  R    RV I TDV ARGID+  + LVI+ +L
Sbjct: 282 EKMRENNFPVSSIHGDMPQGERDEITRQFRALETRVLITTDVWARGIDVQHVSLVINYDL 341

Query: 322 SSNPENLLHRSGRTGRAGRKGMSV 345
            +N E  +HR GR+GR GRKG+++
Sbjct: 342 PNNRELYIHRIGRSGRYGRKGVAI 365


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 188/364 (51%), Gaps = 17/364 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I     E  +   T++Q+      +   D++  A+TGSGKT+AF L     +LA+
Sbjct: 35  NFPHFIQNQFKEMNFKEPTAIQKQAWPIVMSGNDMIGLAETGSGKTLAFLLPGLMHVLAQ 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRER- 118
            +       P+ + + PTRELA+Q+    E         +K   +   C+ G  V + + 
Sbjct: 95  KE-LKKGDGPIMVILTPTRELAIQIHGACENFCNAFVPDSKDRALKIACLYGGEVRKTQI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++ ++   +++ TPGRL D ++    N+     +VLDEAD MLD+GF   I  I      
Sbjct: 154 KECRSKPQVIIATPGRLLDFLQAGITNMKRCSYLVLDEADRMLDMGFNPQISQITSQVTP 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA---VRVNIAS-ENRQHSDIDYRAVLVALSDRDNA 234
            R+ L FSAT + ++ ++A +Y   A     VNI S E   +  +    + +  SD+   
Sbjct: 214 DRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQSFLFIQESDKIAR 273

Query: 235 IVNIL----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + ++L    +       +VFC T+      T+ L E  +  +++ GE  Q+ER   L+  
Sbjct: 274 LTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREWVLEEF 333

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           R G+  + +ATDVAARG+D+ +++ VI+ ++    ++ +HR GRTGRAG++G SV F  P
Sbjct: 334 RSGKTPILVATDVAARGLDVENVKYVINYDMPHEIDSYIHRIGRTGRAGKEGNSVSFFTP 393

Query: 350 QNMQ 353
           +++Q
Sbjct: 394 EDVQ 397


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 195/393 (49%), Gaps = 12/393 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQP 179

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 180 N-LKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKD-AVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILR--YH 242
           AT    +  LAK+  K+  ++VN+ S        I     L+   ++   + ++L+  + 
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+ +    TK L       + + G+  Q+ER   L   + G++ + IATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RL 359
           VA+RG+D+ +++ VI+ +  +  E+ +HR GRTGRAG  G S   +  +  R A+   ++
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
            RE+   V     P +E I         ++P +
Sbjct: 479 LRESEQPV----PPQLEKISYSMGNNQRRNPYY 507


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 192/382 (50%), Gaps = 16/382 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P      +  + Y   T +Q       +   +++  A+TGSGKT+AF L  A   +   
Sbjct: 123 FPDYCMNEIRRQRYTEPTPIQAQAWPIAMSGHNMVGIAKTGSGKTLAFILP-AILHINGQ 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ + +   +  +  V   CI GG    R+  DL+ G 
Sbjct: 182 QPLQRGDGPIALVLAPTRELAQQI-QSVANDFGSSAYVRNTCIFGGAPRSRQANDLERGV 240

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D ++G   N+     +VLDEAD MLD+GF   I  IL      R++LM+
Sbjct: 241 QIVIATPGRLLDFLQGGATNLKRCTYLVLDEADRMLDMGFEQQIRKILGQIRPDRQILMW 300

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRY--- 241
           SAT    +  LA+++  + +++NI S E   + +I     + A  ++   + ++L +   
Sbjct: 301 SATWPKEVRKLAEDFLGNYIQINIGSLELSANHNIRQFVEVCAEHEKGGKLKDLLSHIYD 360

Query: 242 --HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F +T+  V    + +      V ++ G+ SQ +R + L   R+GR  + +
Sbjct: 361 QSTSPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRNGRHNILV 420

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRA 356
           ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S  F   +N +  R  
Sbjct: 421 ATDVAARGLDVDGIKYVINFDFPQSSEDYVHRIGRTGRKHSTGTSYAFFTRKNAKCARAL 480

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             + REAN +V     P +E++
Sbjct: 481 IEILREANQNV----NPELESM 498


>gi|326795324|ref|YP_004313144.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546088|gb|ADZ91308.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 403

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 190/365 (52%), Gaps = 13/365 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +A+S+ G  + T +Q   +   L  +D+L SA TG+GKT+AF   +   +L  ++  
Sbjct: 11  TIEQAISDMGLTSPTPIQIQAIPAALDAQDILASAPTGTGKTIAFAAPIIQHILDRDEES 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   AP AL +AP+RELA Q+ + +E L   T + + + +GG     +++ L     I+V
Sbjct: 71  T--LAPKALILAPSRELARQIFQVIEKLLTHTRIQLQLIVGGTPYGNQQKQLSEPCDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +  +   L++S +   V+DEAD MLD+GF D +  I    P   + L FSATI
Sbjct: 129 ATPGRLIELDQKGWLDLSDVSMFVIDEADRMLDMGFIDAVTSIAKELPA-HQTLFFSATI 187

Query: 190 SPA-----ITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIV-NILRYH 242
                    +TL K   +DA ++ ++   R   S I   A+ V       A++ +IL   
Sbjct: 188 EGEKMGRFASTLLK---EDATQIQLSESVRSVPSQITQLAMRVDDEPHKEALLKHILEKD 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A VF S +  V  + + +     +   L G++ Q +R++ L+ M+ GR +V +ATD
Sbjct: 245 ETNQAAVFVSNKDHVDIWVQKIRNWGLRCDGLHGDMKQGDRNDHLKQMKKGRLKVLVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+DLP++  VI+  L    +  +HR+GR  R G  G    ++  N     E++ R 
Sbjct: 305 VASRGLDLPEINTVINVRLPRKADAYVHRAGRASREGNPGKCYSLVDINDLPMMEKIQRY 364

Query: 363 ANVSV 367
             V+V
Sbjct: 365 MQVAV 369


>gi|224054552|ref|XP_002298317.1| predicted protein [Populus trichocarpa]
 gi|222845575|gb|EEE83122.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 247/491 (50%), Gaps = 37/491 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+ NLT +Q   + P L  KDVL +A+TGSGKT+AF   + +  L  N  F+P 
Sbjct: 101 KTIQEMGFENLTQIQARAIPPLLVGKDVLGAARTGSGKTLAF--LIPAVELLHNVHFAPR 158

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V ++L   +++T   + + IGG +   E   L  G +++V
Sbjct: 159 NGTGVVVICPTRELAIQTHAVAKDLLKYHSQT---LGLVIGGAARRGEAERLVKGVNLLV 215

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH++  KG    +LK + +DEAD +L+  F ++++ I+   PK R+  +FSAT
Sbjct: 216 ATPGRLLDHLQNTKGFIYKNLKCLTIDEADRILEANFEEEMKQIIKLLPKARQTALFSAT 275

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAK 245
            +  +  LA+ ++Q   V +++     + ++  +     +V  + R   + +  + + +K
Sbjct: 276 QTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFFKRNLSK 335

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  SV     +L     +   + G+  QQ+R++           + + TDVAA
Sbjct: 336 KVMVFFSSCNSVKFHADLLRYIQVECFDIHGKQKQQKRTSTFFDFCKAEKGILLCTDVAA 395

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQRRAERLFREA 363
           RG+D+P ++ ++  +    P+  +HR GRT R  G KG + +F+IP+ +Q    R  + A
Sbjct: 396 RGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELQFL--RYLKAA 453

Query: 364 NVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            V V  +E      A  +   ++++ +  +L+    D  +   +    H  + I      
Sbjct: 454 KVPVKEYEFDQKKLANVQSQLEKLVANNYYLNKSAKDAYRSYMLAYNSHSMKDI----FN 509

Query: 423 IHR-------AGLC--APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS-LS 472
           +HR       A  C  +P ++  +++ S   +FR      K   GSR+ F  S+ +   S
Sbjct: 510 VHRLDLQAVAASFCFSSPPKVN-LNMESNASKFRK-----KTHKGSRNGFNESNPYGRQS 563

Query: 473 VGSKQKAEARW 483
            G +++  AR+
Sbjct: 564 DGDEKRQFARY 574


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 6/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+++ T +Q   +   L  +DV+  AQTGSGKT  F   +   +  + 
Sbjct: 236 FPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYHVTKQR 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                   P+AL +APTREL  Q+  E+   +AK    + V +C GGV+++ + ++L+ G
Sbjct: 296 P-LKYGDGPMALIMAPTRELCQQLYAEVR-KFAKNYDSIRVGICFGGVNMYEQGKELKMG 353

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++     +S    + LDEAD ML+LGF   +  I +     ++ L 
Sbjct: 354 VEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLF 413

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHG 243
           FSAT    I  LA     D V++      + + ++     ++    +   ++ NI++ + 
Sbjct: 414 FSATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQNFKILGQDQKLQWLLGNIVQLNS 473

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF + +A      + L +  F+   + G++ Q ER++ ++  +  +    IATDV
Sbjct: 474 VGSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLATLIATDV 533

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           AARG+D+  ++ VI+ + + N +  +HR GRT RAG  G ++  + PQ+ +
Sbjct: 534 AARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSE 584


>gi|289628314|ref|ZP_06461268.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 413

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 183/337 (54%), Gaps = 14/337 (4%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL---ALAIAPTRELAVQVG 91
           L+ +D+ V+AQTGSGKT AF L + + L+       PA   +   A+ + PTRELA Q  
Sbjct: 3   LQGRDLRVTAQTGSGKTAAFVLPILNRLIG------PAKVRVDIRAVILLPTRELAQQTL 56

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
           +E+E     T V   +  GG     +   L+    I++GTPGRL + +    L++ H++ 
Sbjct: 57  KEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEV 116

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA-ITTLAKNYQKDAVRVNIA 210
           +VLDEAD MLD+GF +D+E +      + + ++FSAT   A +  +     KD   + + 
Sbjct: 117 LVLDEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVN 176

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
           S +   S   ++ +    +     ++N +L     + AI+F +T+A   R    L    +
Sbjct: 177 SVSELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEY 236

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +   L G+  Q++R  A+  ++ G A++ +ATDVAARG+D+  L++VI+ ++  + ++ +
Sbjct: 237 KAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYV 296

Query: 330 HRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           HR GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 297 HRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 333


>gi|146304259|ref|YP_001191575.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           sedula DSM 5348]
 gi|145702509|gb|ABP95651.1| DEAD/DEAH box helicase domain protein [Metallosphaera sedula DSM
           5348]
          Length = 348

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/361 (33%), Positives = 189/361 (52%), Gaps = 28/361 (7%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+ +   +  AL++  Y   T VQE  +   +  + V+V A+TGSGKT       AS L
Sbjct: 1   MFDQLSDQLKRALADINYQRPTKVQEIAIPVFMNGESVIVQAKTGSGKT-------ASYL 53

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +   +R+  A     L + PTRELA QV  E + L       + V IGGV   R+ R  +
Sbjct: 54  IPVLERYHNA-----LILVPTRELAEQVAYEAKRLGKYKRTSIGVIIGGVGYDRQER--E 106

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + + I+VGTPGR+ D + G+G L++S  K  ++DE D MLD+GF DD+  IL S      
Sbjct: 107 SDSDIIVGTPGRILD-LWGRGTLDLSRFKLAIVDEVDRMLDMGFIDDVRMIL-SKTSAEN 164

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNI 238
              FSAT+ P +  LA+ +  +A  + +        D ++  V      RDN    +  +
Sbjct: 165 FGFFSATVPPEVKELAEEFSPNARFLKVDEYKPVEIDHEFYPV------RDNWHEKVTKL 218

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    K AIVF +T+A        +++ +     L G++SQ  R   L   + G + + 
Sbjct: 219 LKDVNGK-AIVFTNTKARAEALYDNISDRV-STSLLHGDMSQGSRRRNLMSFKRGDSDIL 276

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+AARGID+ D+E V++ +L  + E  +HR GRTGR GRKG +V    +  +   +R
Sbjct: 277 ISTDLAARGIDVIDVEQVVNFDLPRDVETYIHRVGRTGRMGRKGRAVSYYTRREEEMVQR 336

Query: 359 L 359
           +
Sbjct: 337 I 337


>gi|73984192|ref|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicase DDX18 (DEAD-box
           protein 18) (Myc-regulated DEAD-box protein) (MrDb)
           [Canis familiaris]
          Length = 669

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  +F P 
Sbjct: 191 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVKL-KFMPR 248

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 249 NGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 308

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 309 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 368

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 369 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 428

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G   Q +R+       +  + + + TDVAARG+
Sbjct: 429 VFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARGL 488

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 489 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 534


>gi|73621052|sp|Q4R4Y9|IF4A2_MACFA RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|67970988|dbj|BAE01836.1| unnamed protein product [Macaca fascicularis]
          Length = 408

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 40  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 99

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 100 ---FKETQ---ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 153

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEAD ML  GF+D I  I        ++++
Sbjct: 154 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVL 213

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 214 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 273

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 274 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 333

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 334 LARGIDVQQVSLVINYDLPTNRENYIH 360


>gi|193652521|ref|XP_001942765.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Acyrthosiphon
           pisum]
          Length = 423

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 184/346 (53%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F L+    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAMLGMDILCQAKSGMGKTAVFVLSTLQQLEVYE- 107

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA- 125
                S   AL +  TRELA Q+ +E E +      V V+V  GGV + ++   L+N   
Sbjct: 108 -----SEVYALVLCHTRELAFQISKEFERFTKYLPAVKVSVFFGGVPITKDEDTLKNNKP 162

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLM 184
           H+VVGTPGR+ + IR K L +++LK  +LDE D+ML+ L  R D++ I  ++P  ++++M
Sbjct: 163 HVVVGTPGRILELIRKKKLVLNNLKHFILDECDKMLEILHMRSDVQEIFKNTPFNKQVMM 222

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT+S  I  + K + +  + V +  + +   H    Y   L    +++  + ++L   
Sbjct: 223 FSATLSKDIRPVCKKFMQQPLEVYVDDDAKLSLHGLQQYYVKLTE-KEKNKKLFDLLDEL 281

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  +       T++L E  F  VA+ G +SQQ+R    Q  +D + R+ +AT+
Sbjct: 282 EFNQVIIFVKSVQRCVVLTELLNEQNFPSVAMHGGMSQQDRLKFYQEFKDFQKRILVATN 341

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  RG+D+  + +VI+ ++  + +  LHR  R GR G KG+++  I
Sbjct: 342 LFGRGMDIERVNIVINYDMPEDTDTYLHRVARAGRFGTKGLAITFI 387


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 177/358 (49%), Gaps = 7/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I       G+   T +Q       L  ++++  AQTGSGKT++F L      +   
Sbjct: 65  FPDYIQSYFKREGFTEPTMIQAQGWPVALTGRNLVGIAQTGSGKTLSFILP-GIVHINHQ 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
               P   P+ L + PTRELA QV +E+ +   K   + + CI GG     + R+L+ G 
Sbjct: 124 PLLQPGDGPIVLVLCPTRELAQQV-QEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGV 182

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 183 EICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRPDRQTLMW 242

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL-RYHG 243
           SAT    +  LA ++  D V + + S     +    + V V    ++++ ++ +L    G
Sbjct: 243 SATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHKLLKLLEEIMG 302

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    ++F  T+      T+ L    +  + + G+ +Q ER   L   R G A + +AT
Sbjct: 303 EKENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRKGHAPILVAT 362

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RG+D+ D++ VI+ +  +  E+ +HR GRT R+ R G S      N  ++A+ L
Sbjct: 363 DVASRGLDISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAKQAKEL 420


>gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca
           mulatta]
          Length = 527

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 174/340 (51%), Gaps = 14/340 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +        L
Sbjct: 21  GLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY----GIFCL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H+V+ TPGRL DH
Sbjct: 75  VLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADH 134

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSATISPAIT 194
           +R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT++  + 
Sbjct: 135 LRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLR 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGAKNAIVF 250
            L              +       +D R +LV    +D  +V++++     H   + I+F
Sbjct: 195 ELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA+RG+D+
Sbjct: 255 TNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDI 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 315 PTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|301762406|ref|XP_002916625.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 191/360 (53%), Gaps = 6/360 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 247 FQRYPEVM-ENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL+ 
Sbjct: 306 SQPVIRGQRNGPGMLVLTPTRELALQVEAECS-KYSYKGLKSVCIYGGGDRNGQIQDLKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P  R+ 
Sbjct: 365 GVDIIIATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQT 423

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++ + I   L  
Sbjct: 424 IMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEEEKCSHIQTFLES 483

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              K+  IVF S +A+    +  L      V +L G   Q +R  AL+  + G+ R+ IA
Sbjct: 484 MSPKDKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIA 543

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ ++ +N  R A  L 
Sbjct: 544 TDLASRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELI 603


>gi|223590058|sp|A5DDF4|PRP5_PICGU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|190345338|gb|EDK37207.2| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 189/374 (50%), Gaps = 15/374 (4%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   L E+ GY   + +Q   L   +  +D++  A TGSGKT+AF + L   ++ +
Sbjct: 273 LPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIM-D 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ + + PTRELA+Q+ +EL        + V  C GG  +  +  DL+ G 
Sbjct: 332 QPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGT 391

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKA---VVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D +   G  +++L+    +VLDEAD M D+GF   +  +L      ++M
Sbjct: 392 EIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQM 451

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNAIVN 237
           ++FSAT    + +LA+++  D + +     +    +I  R VL+  S      +  A++ 
Sbjct: 452 VLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLK 511

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           I+     ++     ++F   + +       L  +    + + G   Q +R +A++   D 
Sbjct: 512 IVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQISCIVIHGGKDQVDRKHAIKQFSDK 571

Query: 294 RA-RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              RV IAT +AARG+D+  L LVI+ +  S+ E+ +HR GRTGRAG  G +V ++  + 
Sbjct: 572 NGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQ 631

Query: 353 QRRAERLFREANVS 366
           +R    L R   +S
Sbjct: 632 EREIRDLVRAMKMS 645


>gi|242023201|ref|XP_002432024.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517382|gb|EEB19286.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 610

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 187/356 (52%), Gaps = 14/356 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q       L  ++++  A+TGSGKT+ F L  A   +    +      P+AL 
Sbjct: 221 YFAPTPIQSQGWPIALSGQNMVGIARTGSGKTLGFVLP-AVIHIQHQPKLERGDGPIALV 279

Query: 80  IAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           +APTREL VQ  + +   +A+ +G+      GG   + + R L+NG  I V TPGRL D 
Sbjct: 280 LAPTREL-VQQTQNVAIPFARASGIRSVAVYGGSDKYGQDRHLRNGTEICVATPGRLLDF 338

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +     N+     +VLDEAD M D+GF   I  I+D     R++LM+SAT    I  LA+
Sbjct: 339 LNSGTTNLERCTYLVLDEADRMFDMGFEPQIRSIIDQIRPDRQVLMWSATWPKEIKRLAE 398

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRYHGAKNAI---VFCSTR 254
            Y KD +++N+ S+    +    + V V  S+RD   + N+L+  G ++ I   +F +T+
Sbjct: 399 EYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKKKLQNVLKEIGEQDEIKTLIFTATK 458

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                    L +  ++  +L G  +Q+ R   L+    GR ++ +ATDVAARG+D+ D+ 
Sbjct: 459 QKSDSIAFWLQDLGYRCDSLHGGKTQKNRDFILR----GRIKILVATDVAARGLDVSDIR 514

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREANVSV 367
            VI+ +  +N E+ +HR GRTGR    G S  F+  ++  +  +   + REAN +V
Sbjct: 515 YVINYDYPNNMEDYIHRIGRTGRHNATGTSYTFLTDEDASKAGDLISVLREANQNV 570


>gi|134034145|sp|Q0CXD0|IF4A_ASPTN RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
          Length = 396

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 166/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++          +  P   A  A
Sbjct: 42  GFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQ-------KIDPNLKACQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG ++  + + LQ G  IVVGTPGR+ D
Sbjct: 95  LIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQD 154

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 155 MIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVVLLSATMPQDVLEVT 214

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 215 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 274

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 275 VDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 334

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 335 INYDLPANRENYIH 348


>gi|19527499|gb|AAL89864.1| RE20606p [Drosophila melanogaster]
          Length = 376

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 163/313 (52%), Gaps = 5/313 (1%)

Query: 41  LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
           +  AQTGSGKT AF L + S LL E+        P  + ++PTRELA+Q+  E      +
Sbjct: 1   MACAQTGSGKTAAFLLPILSKLL-EDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE 59

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           + + + +  GG S   +   +  G H+V+ TPGRL D +    +     + VVLDEAD M
Sbjct: 60  SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM 119

Query: 161 LDLGFRDDIEFILD--SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           LD+GF +D+  I+   +   + + LMFSAT    I  +A  + K+ V V I       SD
Sbjct: 120 LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSD 179

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +      V    + + ++ IL    A   IVF  T+         L+E  F   ++ G+ 
Sbjct: 180 VKQTIYEVNKYAKRSKLIEILSEQ-ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDR 238

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q +R  AL+  ++G  +V IAT VA+RG+D+ +++ VI+ ++ S  ++ +HR GRTGR 
Sbjct: 239 LQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 298

Query: 339 GRKGMSV-FVIPQ 350
           G  G +  F  P+
Sbjct: 299 GNNGRATSFFDPE 311


>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
 gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
          Length = 418

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 114/344 (33%), Positives = 182/344 (52%), Gaps = 14/344 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G  + T VQ A +   L+ KDVL  AQTGSGKT AF L +   L  EN       
Sbjct: 16  ACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRL-GEN-----PY 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+  + + L A   +  AV +GG+ +  + + L    H+V+ TPG
Sbjct: 70  GIFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILTERPHVVIATPG 129

Query: 134 RLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           R+  H+ G   +I    S  K +VLDEAD +LD GF+D+++ I D   K+R+ L+FSAT+
Sbjct: 130 RIKAHL-GSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQTLLFSATM 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
           +  +  L   +   A         +    +D R + +    ++  +  +L        ++
Sbjct: 189 TGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENLELGDIRS 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F S   +    + +L E     VAL    +Q +R  AL   + G+A + IATDVA+R
Sbjct: 249 VIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVASR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P ++LV++ ++    ++ +HR GRT RAGR G ++ ++ +
Sbjct: 309 GLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTE 352


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 180/360 (50%), Gaps = 6/360 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P ++ E +   G+   T +Q       L   D++  AQTG+GKT+A+ L     + 
Sbjct: 283 FAHYPGIM-ENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMD 341

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+Q+  E    Y+  G       GG   + + + + +
Sbjct: 342 GQPMPRDKRNGPGMLVLTPTRELALQIEAECN-KYSYKGFKSICIYGGGDRNAQIKVVTS 400

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  IV+ TPGRL D    + +N+  +  +VLDEAD MLD+GF   I + ILD  P  R+ 
Sbjct: 401 GVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPD-RQT 459

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR 240
           +M SAT  P +  LAK+Y KD + V + + +    +   + VL    D  +D     I R
Sbjct: 460 VMTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHR 519

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F   +      +  L      V +L G+  Q +R  ALQ  +DGR R+ +A
Sbjct: 520 MEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVA 579

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G SV ++ +   R A  L 
Sbjct: 580 TDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELI 639


>gi|148726561|emb|CAN88468.1| novel protein similar to vertebrate eukaryotic translation
           initiation factor 4A, isoform 2 (EIF4A2, zgc:63783)
           [Danio rerio]
          Length = 382

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 171/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 14  NLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 74  QKETQ------ALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQAEA 127

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 128 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  +   + ++ VR+ +  E      I    + V   + + + + ++     
Sbjct: 188 LSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 248 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLITTDL 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 308 LARGIDVQQVSLVINYDLPTNRENYIH 334


>gi|330888787|gb|EGH21448.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 391

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 151/298 (50%), Gaps = 1/298 (0%)

Query: 51  TVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           T  F L L   L  E  + +P     AL +APTRELA QV   +        +      G
Sbjct: 1   TAGFALPLLQRLTMEGPKVAPNCV-RALVLAPTRELADQVHESIRQYAEHLPLSTYAAYG 59

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GVS++ +   L+ G  ++V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++ 
Sbjct: 60  GVSINPQMMKLRKGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELR 119

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I    PK+R+ L+FSAT S  I  LA     D + + ++  N   S +    V V    
Sbjct: 120 GIYAVLPKQRQTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKR 179

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + +  +++++ H     +VF  TR  V +    L         + G+  Q  R  AL   
Sbjct: 180 KADLFIHLMKKHRWGQVLVFAKTRVGVDQLVDRLQGLGLDADGIHGDKPQATRQRALDRF 239

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +    ++ +ATDVAARG+D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 240 KSNEVKILVATDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLV 297


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 195/392 (49%), Gaps = 53/392 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +P+ + +A+ E  +   + +Q   +   L ++D++  A+TGSGKT AF + + + L    
Sbjct: 357 LPEALFKAIQEMRFERPSPIQMQAIPIGLAKRDIIGIAETGSGKTAAFLIPIIAYLYHLP 416

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVV-------VAVCIGGVSV 114
           A     +    PLAL +APTRELA+Q+ +E   L  + + GVV           +GG S+
Sbjct: 417 AVMLERTGEQGPLALIMAPTRELALQIEQEAIKLCKHTQVGVVGSQNRIRTLSVVGGQSI 476

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G  I++GTPGRL D +    L ++    VVLDEAD M+D+GF   +  +LD
Sbjct: 477 EDQAFKLRQGVDIIIGTPGRLMDCMESHYLVLNQCNYVVLDEADRMIDMGFEPQVVAVLD 536

Query: 175 S------SPKKRRM------------------LMFSATISPAITTLAKNYQKDAVRVNIA 210
           +      S  +  M                  +MFSAT+   +  LAK Y +    + I 
Sbjct: 537 NMGSLLKSENEEEMEKQLERANNAQEFRYRVTMMFSATMPTEVERLAKTYLRHPAIIKIG 596

Query: 211 SENR-QHSDIDYRAVLVALSDRDNAIVNIL----------------RYHGAKNAIVFCST 253
            E+  ++  I+ R V +    +   + ++L                +    +  +VF + 
Sbjct: 597 DEDSGKNKRIEQRVVFLNSGKKKLRLQHLLHETLSSSGQVRISRKEKVVDGQKVMVFVNI 656

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K LA+  F+   L G  SQ++R  +L+  R+G   V +ATDVA RG+D+PD+
Sbjct: 657 KKECDVLGKYLAQEGFRTTILHGGKSQEQREESLRGFREGFCDVLVATDVAGRGLDIPDV 716

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             V++ +L S  EN  HR GRTGRAG++G+++
Sbjct: 717 THVVNYDLPSKIENYCHRIGRTGRAGKEGVAI 748


>gi|323305103|gb|EGA58853.1| Spb4p [Saccharomyces cerevisiae FostersB]
          Length = 606

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 185/356 (51%), Gaps = 23/356 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I   L   G+  +T VQ + +      KDV+V + TGSGKT AF + + + ++ E     
Sbjct: 18  IRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLAKVVKEEANTS 77

Query: 68  RFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F  A    +L IAPTREL+ Q+       LE   +    +    + G +    R D   
Sbjct: 78  KFKKAHFH-SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSN 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   I++GTPGR+ D ++   +  S    VV+DEAD +LD+ F  D E IL   PK+
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+  A + + K   ++ VR+ + S+N+  S +     +V  +++   +V++L
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSVL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMM 290
             +  K  IV+  T  SVS F   + ++L          +V +L G+L    R+  L   
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFI-QYLGKRNILVNEVEVFSLHGKLQTSARTKTLTAF 315

Query: 291 RDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D  +  V   TDVAARGID+PD++LVI  +  +N +  +HR GRTGRA R G ++
Sbjct: 316 TDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371


>gi|14318521|ref|NP_116654.1| Spb4p [Saccharomyces cerevisiae S288c]
 gi|134787|sp|P25808|SPB4_YEAST RecName: Full=ATP-dependent rRNA helicase SPB4; AltName:
           Full=Suppressor of PAB1 protein 4
 gi|160358678|sp|A7A237|SPB4_YEAS7 RecName: Full=ATP-dependent rRNA helicase SPB4; AltName:
           Full=Suppressor of PAB1 protein 4
 gi|4522|emb|CAA34272.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|836754|dbj|BAA09238.1| rRNA helicase [Saccharomyces cerevisiae]
 gi|151940761|gb|EDN59148.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|285811894|tpg|DAA12439.1| TPA: Spb4p [Saccharomyces cerevisiae S288c]
          Length = 606

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 23/356 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I   L   G+  +T VQ + +      KDV+V + TGSGKT AF + +   ++ E     
Sbjct: 18  IRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTS 77

Query: 68  RFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F  A    +L IAPTREL+ Q+       LE   +    +    + G +    R D   
Sbjct: 78  KFKKAHFH-SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSN 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   I++GTPGR+ D ++   +  S    VV+DEAD +LD+ F  D E IL   PK+
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+  A + + K   ++ VR+ + S+N+  S +     +V  +++   +V+IL
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSIL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMM 290
             +  K  IV+  T  SVS F   + ++L          ++ +L G+L    R+  L   
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFI-QYLGKRNILVNEVEIFSLHGKLQTSARTKTLTAF 315

Query: 291 RDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D  +  V   TDVAARGID+PD++LVI  +  +N +  +HR GRTGRA R G ++
Sbjct: 316 TDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371


>gi|206971225|ref|ZP_03232176.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733997|gb|EDZ51168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 436

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 178/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A   ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAADQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|50815|emb|CAA26843.1| unnamed protein product [Mus musculus]
 gi|50820|emb|CAA26846.1| unnamed protein product [Mus musculus]
          Length = 370

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 175/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 2   NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI--E 59

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D      A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 60  LD----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 115

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 116 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 175

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 176 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 235

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 236 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 295

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 296 LARGIDVQQVSLVINYDLPTNRENYIH 322


>gi|146323887|ref|XP_751498.2| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|91206842|sp|Q4WQM4|HAS1_ASPFU RecName: Full=ATP-dependent RNA helicase has1
 gi|129557486|gb|EAL89460.2| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159125568|gb|EDP50685.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 622

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/372 (31%), Positives = 202/372 (54%), Gaps = 17/372 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L A   RF P 
Sbjct: 153 KAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSAL--RFKPR 210

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 211 NGTGVIVVSPTRELALQIFGVARELCQYHSQT---YGIVIGGANRRAEAEKLMKGVNLLI 267

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
            TPGRL DH++  +G    +LK +V+DEAD +L++GF D++  I+   P ++R+ ++FSA
Sbjct: 268 ATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSA 327

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS ++      V+     R   + + L+ + 
Sbjct: 328 TQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNL 386

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I TDV
Sbjct: 387 KKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICTDV 446

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  + Q  +    +  +E
Sbjct: 447 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNAKGRSLMFL-QPSEVGFLKHLKE 505

Query: 363 ANVSVVWEPAPS 374
           A V VV    P+
Sbjct: 506 ARVPVVEFEFPA 517


>gi|66911669|gb|AAH96848.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Danio rerio]
 gi|182889788|gb|AAI65637.1| Ddx18 protein [Danio rerio]
          Length = 653

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 200/360 (55%), Gaps = 14/360 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++ +V+ E     + E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF   + 
Sbjct: 161 FASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAF--LIP 218

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S  L    +F P +    + ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 219 SIELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQ 278

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +++DEAD +L++GF ++++ I+   PK
Sbjct: 279 KLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPK 338

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAI 235
           KR+ ++FSAT +  +  LA+ + +K+ + V +  +N+  + ++   +  +V  S++   +
Sbjct: 339 KRQSMLFSATQTRKVEDLARISLKKEPLYVGV-DDNKDTATVEGLEQGYVVCPSEKRFLL 397

Query: 236 V-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 398 LFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAD 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 458 SGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 517


>gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris]
 gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus]
 gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 175/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 22  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQI--E 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D      A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 80  LD----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 135

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 136 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 196 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 256 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 316 LARGIDVQQVSLVINYDLPTNRENYIH 342


>gi|294934064|ref|XP_002780961.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239891132|gb|EER12756.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q   + P +  +D +  AQ+G+GKT AF +   +       R  P   A  A
Sbjct: 35  GFEKPSAIQSRAIKPLIAGRDTIGQAQSGTGKTGAFTIGCLA-------RVDPKLRATQA 87

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+    + L     +    CIGG +V  +   L+ G H+VVGTPGR+ D
Sbjct: 88  LILAPTRELAQQITSVTKSLADFLDIKCHACIGGTAVREDIEKLREGQHVVVGTPGRVFD 147

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
               + L +  LK  VLDEADEML  GF+D I  +    P   ++ +FSAT+   I  L 
Sbjct: 148 MANKRHLRLDDLKIFVLDEADEMLSRGFKDQIYDVFRLLPSNVQVALFSATLPDDIIQLT 207

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
             + +D VR+ + ++      I  R   +A+   +   + + ++        AI++C+TR
Sbjct: 208 TKFMRDPVRILVKTDELTLEGI--RQFYIAIDSEEYKFDTLKDLYETLTITQAIIYCNTR 265

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + + E    V  +  +L+Q+ER   ++  R G +RV I+TD+ ARGID+  + 
Sbjct: 266 RKVDYLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQVS 325

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LVI+ ++ ++ EN LHR GR GR GRKG+++ FV+P ++++  E + R  N  V   P
Sbjct: 326 LVINYDIPASIENYLHRIGRGGRFGRKGVAINFVVPDDIKQLRE-IERHYNTQVDEMP 382


>gi|146419343|ref|XP_001485634.1| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 189/374 (50%), Gaps = 15/374 (4%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   L E+ GY   + +Q   L   +  +D++  A TGSGKT+AF + L   ++ +
Sbjct: 273 LPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIM-D 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ + + PTRELA+Q+ +EL        + V  C GG  +  +  DL+ G 
Sbjct: 332 QPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGT 391

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKA---VVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D +   G  +++L+    +VLDEAD M D+GF   +  +L      ++M
Sbjct: 392 EIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQM 451

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-----DRDNAIVN 237
           ++FSAT    + +LA+++  D + +     +    +I  R VL+  S      +  A++ 
Sbjct: 452 VLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLK 511

Query: 238 ILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           I+     ++     ++F   + +       L  +    + + G   Q +R +A++   D 
Sbjct: 512 IVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQILCIVIHGGKDQVDRKHAIKQFSDK 571

Query: 294 RA-RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              RV IAT +AARG+D+  L LVI+ +  S+ E+ +HR GRTGRAG  G +V ++  + 
Sbjct: 572 NGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQ 631

Query: 353 QRRAERLFREANVS 366
           +R    L R   +S
Sbjct: 632 EREIRDLVRAMKMS 645


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 182/347 (52%), Gaps = 9/347 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A S++GY   T +Q+  +   L  +DVL  A TG+GKT AF L L   LL E +      
Sbjct: 15  AASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLLQKLLDEPNH---GR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL +APTRELA Q+   +  L       +A+  GG +   +   L+NG  IV+ TPG
Sbjct: 72  LPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYLENGCDIVIATPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL + +  +  ++S ++ VV+DEAD MLD+G   D+  +L +     +  +FSAT++   
Sbjct: 132 RLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQTSLFSATLAGSG 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFC 251
           +   A     +A R+ + + N+    +  +  L    +   A++  +++    ++A++FC
Sbjct: 192 VELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHKQALLAAVIKQTDCESALIFC 251

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           + +      +  L         + G+ +Q +R    +  R G+ +  +ATDVAARG+DLP
Sbjct: 252 NKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALVATDVAARGLDLP 311

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----QNMQR 354
            +  VI+ ++    +  +HR GRTGRAG+ G +V ++     +N+QR
Sbjct: 312 QVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQR 358


>gi|226289015|gb|EEH44527.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb18]
          Length = 546

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/362 (32%), Positives = 196/362 (54%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 125 PWLVG-SLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAF----AAPILQKWS 179

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 180 EDPF----GIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 235

Query: 126 HIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           H+V+ TPGRL DHI   G      ++  + VVLDEAD +L+ G      D+E  L + P 
Sbjct: 236 HVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSALPP 295

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  I++EN+      +    +LV L+ 
Sbjct: 296 STARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLTH 355

Query: 231 RDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  +L   G  +K AI+FC+   +     ++L     +  +L   L Q ER+  L 
Sbjct: 356 REAFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTANLS 415

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+  +  NP++ +HR GRT RAGR+G +V ++
Sbjct: 416 RFRASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVTLV 475

Query: 349 PQ 350
            Q
Sbjct: 476 GQ 477


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 181/350 (51%), Gaps = 10/350 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P+++ E L    Y   T +Q+  ++      D++ +AQTGSGKT A  + + + L   N 
Sbjct: 74  PEIM-ENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIINYLRMSNI 132

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN 123
               ++       + +APTRELA Q+  E      + T VV  +C GG     + + ++ 
Sbjct: 133 GSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTREQSQRIRE 192

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G +IV+GTPGRL D +    ++ S  + +VLDEAD MLD GF  DI  I    P K    
Sbjct: 193 GCNIVIGTPGRLKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYLPPKDTGK 252

Query: 180 RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R   +FSAT   AI + A++Y + + + V I      ++ +  +   +   ++ N  V I
Sbjct: 253 RTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREKFNRTVEI 312

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            + +  K  ++F +T+        +L     +   + G+  Q++R  A+  ++  R  V 
Sbjct: 313 CKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHVL 372

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+E+VI+ +     E+ +HR GRT R G+KG+++  I
Sbjct: 373 VATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFI 422


>gi|281182661|ref|NP_001162381.1| ATP-dependent RNA helicase DDX18 [Papio anubis]
 gi|162415904|gb|ABX89268.1| DEAD box polypeptide 18 (predicted) [Papio anubis]
          Length = 670

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 190/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  +F P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LKFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 370 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 429

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 430 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 489

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|158293341|ref|XP_314700.4| AGAP008601-PA [Anopheles gambiae str. PEST]
 gi|157016658|gb|EAA10183.4| AGAP008601-PA [Anopheles gambiae str. PEST]
          Length = 611

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 185/332 (55%), Gaps = 10/332 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF   + +  L    RF P 
Sbjct: 131 KAIGEMGFTKMTEIQAKSIPPLLEGRDLIGSAKTGSGKTLAF--LIPAVELIHKLRFKPR 188

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTRELA+Q+   L+ L         + +GG S H E   L+ G +I+V TP
Sbjct: 189 NGAGVIVISPTRELAMQIFGVLKELMTYHCQTYGLLMGGASRHTENEKLEKGINIIVATP 248

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        +L+ +++DE D +L++GF +D++ I+   PKKR+ ++FSAT S 
Sbjct: 249 GRLLDHLKSTPNFLFKNLQCLIIDECDRILEIGFEEDLKQIISILPKKRQTMLFSATQSS 308

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  L K   + + + V +  +N++ + +    +  +V  S+R   ++   L+ +  K  
Sbjct: 309 RLEELGKLALKSEPIYVGV-DDNKKEATVTGLEQGYIVCPSERRLLVLFTFLKKNRKKKV 367

Query: 248 IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +VF S+  SV +F   L  ++   V+++ G+  Q +R++      +    + + TDVAAR
Sbjct: 368 MVFFSSCLSV-KFHHELFNYIDLPVMSIHGKQKQSKRTSVFFQFCNAETGILLCTDVAAR 426

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           G+D+P ++ ++  +  ++ +  +HR GRT R 
Sbjct: 427 GLDIPAVDWIVQYDPPNDTKEYIHRVGRTARG 458


>gi|323452997|gb|EGB08870.1| hypothetical protein AURANDRAFT_26008 [Aureococcus anophagefferens]
          Length = 622

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 191/361 (52%), Gaps = 23/361 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ +     + G+  +T VQ A +   L  KDV+  A TGSGKT+AFG A A  L+A   
Sbjct: 13  PETLACIADDFGFKVMTPVQAASIPLMLGNKDVVAEAVTGSGKTLAFG-ASAVELVAAAK 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P  + ++PTRELA Q    L  L A   +  ++ +GG ++ R  RD      +
Sbjct: 72  ANEPGPGPRCVCVSPTRELATQTFAVLRKLCAAKALAASLVVGGAAMERAVRD-----DV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D ++   ++   +  +VLDEAD +L+LGF +++E I+ + P++RR  +FSA
Sbjct: 127 VVATPGRLDDLLKRGAMDGRRVAVLVLDEADTLLELGFAEELERIMRALPRQRRTALFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHS--------DIDYRAVLVALSDRDNAIVNIL 239
           T + A+  LA+   ++   V +  +  + S        ++    V++    +  A++ +L
Sbjct: 187 TQTRAVAELARAGLRNPATVRVRVQRAEASGEKRVLPPELLNEYVVLRPEHKLAALLAVL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVL-------AEHLFQVVALSGELSQQERSNALQMMRD 292
           R    +  +VF S+ A+V  F + L        + L ++ AL G++  ++R       R+
Sbjct: 247 RERKPRKTLVFLSSCAAVDFFDRCLKAAAAAFPDDLPEMRALHGKMVPKKRRAVWAAFRE 306

Query: 293 --GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
              R    + TDVAARG+D+ D+ELV+  +    PE  +HR GRT RAGR G ++  + +
Sbjct: 307 VAERPVALLCTDVAARGLDVEDVELVVQWDAPQKPETFVHRVGRTARAGRPGAALLFLER 366

Query: 351 N 351
           +
Sbjct: 367 H 367


>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517186|gb|EAS19843.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 377

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 181/341 (53%), Gaps = 14/341 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFS 70
           AL E  + + T +Q+  +   L  KDVL  A+TGSGKT+A+ L L   L    +EN   +
Sbjct: 15  ALRENQFSHPTPIQKLAMPDILAGKDVLGIAKTGSGKTMAYALPLLQRLEGIESENRHIT 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVCIGGVSVHRERRDLQNGAHI 127
                 AL + PTRELA QV  E+   Y+K     ++     GG S++ + R + N   I
Sbjct: 75  ------ALILVPTRELAAQVS-EVFIPYSKALTKPLITMAVYGGASINPQMRKM-NNVDI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL + I    +++ ++KA+VLDEAD+ML  GF+ +++ IL   P KR+ L+FSA
Sbjct: 127 LVATPGRLLELIEANAVHLKNVKALVLDEADKMLTKGFKKELDQILKLLPNKRQNLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  +  L +    D V  ++  +    S I      V  + +   + ++++       
Sbjct: 187 TLSEDVDELQRVLLNDPVTASVEEKEEDISLIKQTGYRVTENKKGALLRHLMKEKEMTQV 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCS+   V      L ++     A+  + SQ  R++AL   + G     ++TD+ ARG
Sbjct: 247 LIFCSSTYQVDHVNDKLKKNGIASKAIHSKKSQGARNSALSEFKSGELTALVSTDLLARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  L  V++ EL  +P++ +HR GRTGRA   G ++  I
Sbjct: 307 IDIEFLPFVVNYELPRSPKDFVHRIGRTGRAENPGEAITFI 347


>gi|67480889|ref|XP_655794.1| helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472953|gb|EAL50406.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 419

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 196/383 (51%), Gaps = 27/383 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+++ G+ + + VQ  ++   L ++D+L  A++G GKT  F +++ +  L  
Sbjct: 39  NLKKEILMAITDCGFEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCL 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK----TG--VVVAVCIGGVSVHRERR 119
            D  S      AL I  TRELAVQV +E + +  +    TG  +     +GG     E++
Sbjct: 99  GDYVS------ALVICHTRELAVQVQKEFDRMKKRLCEATGKEITTGTFVGGFD---EKK 149

Query: 120 DLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           D++    N   IV+GTPGR+   +R   LN+S L   V+DE D++L      DI  I  S
Sbjct: 150 DVEFIKTNKPTIVIGTPGRIASLVRQGALNLSKLDTFVIDECDKVLGSANEIDIGEIFIS 209

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDN 233
           +PK+++++MFSATIS    T+ + Y K+ + V I    +   H    Y   L   +D+  
Sbjct: 210 TPKEKQVMMFSATISEENKTICRKYLKNQLEVFIDDGEKLFLHGLHLYFKKL-GDNDKRK 268

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             ++I+ Y     AIVF           K L +  +    L G + Q+ R    Q  RDG
Sbjct: 269 TFMDIIDYIDFNQAIVFVENSDRCRVLVKKLKQIGYPCGILYGRMDQEIREKEYQRFRDG 328

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            +RV ++TD+  RGID+  + LV++ ++ ++ +  LHR GR GR G KG+++  I  +  
Sbjct: 329 ESRVLVSTDLCGRGIDVAKVNLVVNFDMPNDSDQFLHRVGRAGRFGTKGVAISFIDTD-- 386

Query: 354 RRAERLFREAN--VSVVWEPAPS 374
              E++ +E     +V  +  PS
Sbjct: 387 -EDEKVLKEVQSRFAVQMDELPS 408


>gi|227537996|ref|ZP_03968045.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242072|gb|EEI92087.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 398

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 170/340 (50%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +++ E L+       T +Q+A++   L+ KDVL  + TG+GKT AF L +   LL E
Sbjct: 7   NLSKLLVEKLNTLQITEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVLY-LLTE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVG-RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               S  S    L ++PTRELA Q   R L    ++  +      GG S  ++  +L   
Sbjct: 66  ----SKQSEHKTLVLSPTRELAQQTYLRILNCTPSEVNISTISIFGGQSYEKQAAELSTD 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D +  K +++S  K VV+DEADE+L LGF   +  IL   P  ++ L+
Sbjct: 122 PAIVVATPGRLLDLMDQKLIDLSAFKKVVIDEADELLQLGFMAALFRILGYLPSDKQTLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L         R  + +   Q S I    + V  +D+ N I  ++ ++  
Sbjct: 182 FSATFPKELEELVPKVLHQPFRFEVQNREPQQSQIHQYLLFVDKNDKKNLIKYLIDHYKI 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F  T   V R    L +H      L G+ SQ  R+  ++  ++      +ATD+A
Sbjct: 242 DTALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTATVEDFKNRNFNFLVATDIA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +RG+ L DL+ VI+ E+    E  +HR GRT R  R G +
Sbjct: 302 SRGLHLDDLDHVINYEIPDTSEQYMHRIGRTARGIRDGYT 341


>gi|118099345|ref|XP_425332.2| PREDICTED: similar to DEAD/DEXH helicase DDX31 [Gallus gallus]
          Length = 710

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 187/394 (47%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L+ KD LV +QTGSGKT+A+G+ L  +L     
Sbjct: 125 PHLIATITTVLKICSMTSVQKQTIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMQS 184

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 185 KIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 244

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRM 182
           I++ TPGRL DHI+  + ++    + +++DEAD +LDLGF  D+  I   L++  + R+ 
Sbjct: 245 ILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAERETRQN 304

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----------------HSDIDYRAVL 225
           ++ SAT++  +T LA     D +R++IA E R+                   D +  AV 
Sbjct: 305 VLLSATLTEGVTRLADISLNDPIRISIADEIRESLKPALQTEKEANSSSNRMDQENFAVP 364

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
             L      + + LR             Y      I+F S+   V    ++L   L    
Sbjct: 365 EKLKQYFMMVPSKLRLVTLAAFVLEKCKYEKQHKMIIFFSSCEQVEFHYELLVNVLSGEL 424

Query: 269 --------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                          Q + L G + Q+ER+   Q     +  + + TDVAARG+DLP + 
Sbjct: 425 ESEQPKRSSVSSVQLQFLRLHGNMEQEERTEVFQEFLKSKTGILLCTDVAARGLDLPQVT 484

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     ++P   +HR GRT R G  G S+ V+
Sbjct: 485 WIVQYNAPASPAEYIHRIGRTARIGCHGNSLLVL 518


>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685735|sp|Q5KIK3|DRS1_CRYNE RecName: Full=ATP-dependent RNA helicase DRS1
 gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 808

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/383 (30%), Positives = 199/383 (51%), Gaps = 8/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL+   +   T +Q   +   L  +D+L SA TGSGKT AF + +   L   
Sbjct: 228 NLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY- 286

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQN 123
            DR    +A   L + PTRELAVQ     + L  K G+ V  A+ +GG+S++ +   L+ 
Sbjct: 287 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 346

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+       +S L  +V+DEAD ML+ GF D++E I+ + P+ R+ 
Sbjct: 347 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 406

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY 241
           ++FSAT++ ++  L K      +RV +  +      +    V +   D R  +++ + + 
Sbjct: 407 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKR 466

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  ++A   +   V      +   L G L+Q++R  AL   + G     +AT
Sbjct: 467 TIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLAT 526

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ ++        HR GRT RAGRKG SV ++ +  ++  +   +
Sbjct: 527 DLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIK 586

Query: 362 EANVSVVWE---PAPSVEAIRER 381
           +A    V     P+ +V A++E+
Sbjct: 587 QAEADQVRHRIIPSEAVTAMKEK 609


>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
           cuniculus]
          Length = 789

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 210/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 218 NLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 275

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 276 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 332

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      +++ ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 333 APDILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 392

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 393 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 448

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 449 AALLTRTFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 508

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  ++ V++  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 509 DVLVATDVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 568

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF-LDSIQGDEKKM 403
            + + + A   V     P    +R RD    ++  ++ +  ++ +EK M
Sbjct: 569 LKEIVKAAKAPVKARILPQDVILRFRDKIEAMEKDVYAVLQLEAEEKAM 617


>gi|156377720|ref|XP_001630794.1| predicted protein [Nematostella vectensis]
 gi|156217822|gb|EDO38731.1| predicted protein [Nematostella vectensis]
          Length = 495

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 193/354 (54%), Gaps = 8/354 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E++ +   + + + G+  +T +Q   + P L+ +D+L +A+TGSGKT+AF + +   L  
Sbjct: 6   EDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYK 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F   +    + I+PTREL++Q       L         + +GGV+   E   LQ G
Sbjct: 66  L--QFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKG 123

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            ++++ TPGRL DH++  +G    +L+ +V+DEAD +L++GF +++  I+   P KR+ +
Sbjct: 124 VNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTV 183

Query: 184 MFSATISPAITTLAKNYQKDA---VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LAK   K +   V V+   E      ++   ++V    R   +   L+
Sbjct: 184 LFSATQTKNVEDLAKLSLKRSPLYVGVDDHKETSTVEGLEQGYIVVPSEKRFLVLFTFLK 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF S+  SV   +++L      V+ + G+  QQ+R+       + ++ + + 
Sbjct: 244 KNRSKKVMVFFSSCNSVKYHSELLNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLC 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           TDVAARG+D+P+++ ++  + + +P+  +HR GRT R   G+    +F++P+ +
Sbjct: 304 TDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEEL 357


>gi|225681783|gb|EEH20067.1| ATP-dependent RNA helicase dbp8 [Paracoccidioides brasiliensis
           Pb03]
          Length = 546

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 192/360 (53%), Gaps = 24/360 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF   +        D
Sbjct: 125 PWLVG-SLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILQKW--SED 181

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 182 PF----GIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRPHV 237

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK- 179
           V+ TPGRL DHI   G      ++  + VVLDEAD +L+ G      D+E  L + P   
Sbjct: 238 VIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLADLETCLSALPPST 297

Query: 180 -RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSDRD 232
            R+ L+F+AT++P   A+ ++ +   K  + V  I++EN+      +    +LV L+ R+
Sbjct: 298 ARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLTHRE 357

Query: 233 NAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +L   G  +K AI+FC+   +     ++L     +  +L   L Q ER+  L   
Sbjct: 358 AFLHVLLSTDGNSSKAAIIFCNHTKTADLLERMLRRLGHRATSLHSLLPQSERTANLSRF 417

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R   AR+ +ATDVAARG+D+P + LVI+  +  NP++ +HR GRT RAGR+G +V ++ Q
Sbjct: 418 RASAARILVATDVAARGLDIPSVSLVINFGVPRNPDDYVHRVGRTARAGREGEAVTLVGQ 477


>gi|51010913|ref|NP_001003411.1| ATP-dependent RNA helicase DDX18 [Danio rerio]
 gi|49618963|gb|AAT68066.1| myc-regulated DEAD/H box 18 RNA helicase [Danio rerio]
          Length = 653

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 200/360 (55%), Gaps = 14/360 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++ +V+ E     + E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF   + 
Sbjct: 161 FASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAF--LIP 218

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S  L    +F P +    + ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 219 SIELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQ 278

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +++DEAD +L++GF ++++ I+   PK
Sbjct: 279 KLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPK 338

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAI 235
           KR+ ++FSAT +  +  LA+ + +K+ + V +  +N+  + ++   +  +V  S++   +
Sbjct: 339 KRQSMLFSATQTRKVEDLARISLKKEPLYVGV-DDNKDTATVEGLEQGYVVCPSEKRFLL 397

Query: 236 V-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 398 LFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAD 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 458 SGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGRGHALLILRPEEL 517


>gi|331224777|ref|XP_003325060.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304050|gb|EFP80641.1| eukaryotic initiation factor 4A-II [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 405

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 163/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++  ++           A  AL
Sbjct: 51  GFERPSAIQQRAIIPVIKGHDVIAQAQSGTGKTATFSISILQSIDVN------IKACQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     +     +GG SV      LQ G H++VGTPGR+ D 
Sbjct: 105 VLAPTRELAQQIQKVLVALGDYLNIECYAAVGGTSVRDGMAKLQEGVHVIVGTPGRVFDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K   LDEADEML  GF+D I  +    P   ++++ SAT+   +  +  
Sbjct: 165 IQRRALKTDHIKIFTLDEADEMLSRGFKDQIYDVFQLLPPTTQVVLLSATMPQDVLEVTS 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  +      I    + V   D + + + ++        A++FC+TR  V
Sbjct: 225 KFMRDPIRILVKRDELTLEGIKQFYIAVEKEDWKLDTLCDLYETVTITQAVIFCNTRRKV 284

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    F V ++ G++ Q +R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 285 DWLQEKLTGREFTVSSMHGDMEQGQREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 344

Query: 318 HAELSSNPENLLH 330
           + +L  + EN +H
Sbjct: 345 NYDLPVSKENYIH 357


>gi|169607499|ref|XP_001797169.1| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
 gi|182676401|sp|Q0UN57|PRP5_PHANO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|160701425|gb|EAT85458.2| hypothetical protein SNOG_06807 [Phaeosphaeria nodorum SN15]
          Length = 1184

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 178/349 (51%), Gaps = 14/349 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q   +      +D++  A+TGSGKT+AFG+ +   +L +     PA  P+ L
Sbjct: 563 GYARPTAIQAQAIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRP-LKPADGPIGL 621

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            +APTREL++Q+  EL+     +G+ +    GG  +  +   ++ G  HI+  T GRL D
Sbjct: 622 ILAPTRELSLQIVNELKPFLNASGITIKCAYGGQPISDQIAMIKRGGIHILCATAGRLID 681

Query: 138 HIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
            ++   G+ L+   +  VVLDEAD M D+GF   +  IL S    R+ ++FSAT    + 
Sbjct: 682 LLQSNSGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILASIRPDRQTILFSATFPKTMA 741

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-----KNAIV 249
            LA+        V I   ++   +I     +V  S  +  I  +L + G      +NA V
Sbjct: 742 ALARKALDKPAEVIIGGRSKVAPEITQHITIVPPS-YEKKIAKLLHHLGQTFSDDENAQV 800

Query: 250 FCSTR---ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
              T     +    +K+     F V  + G   Q +R+ A+   + G   + IAT VAAR
Sbjct: 801 LIFTERQETAEDLLSKLFKAKYFAVNTIHGAKDQTDRNEAINEFKQGLLNILIATSVAAR 860

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           G+D+P L LV + +  ++ E+ +HR GRTGRAG KG++V +I    Q R
Sbjct: 861 GLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGNKGLAVTLIENPGQER 909


>gi|48146237|emb|CAG33341.1| DDX18 [Homo sapiens]
          Length = 610

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/346 (30%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 132 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 189

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 190 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 249

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 250 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 309

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K  + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 310 KVEDLARISLKKGPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 369

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 370 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 429

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 430 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 475


>gi|310795696|gb|EFQ31157.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 635

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 196/383 (51%), Gaps = 49/383 (12%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + +S +G+  +T VQ A L   L  KDV+V A TGSGKT+AF L +   L+   D  +
Sbjct: 26  ILDFVSSQGFQRMTPVQAACLPQFLGNKDVVVEAVTGSGKTLAFLLPIVQKLM-RLDEPT 84

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLY---------------------AKTGVVVA-VC 108
                 ++ ++PTRELA+Q+   L+ L                      A   V+V  + 
Sbjct: 85  KRGHVFSIIVSPTRELAIQIHAVLQSLVGFHPPSAEILPFLKEDEKRPDASVPVIVPQLL 144

Query: 109 IGGVSVHRERRDL--QNGAHIVVGTPGRLCD-----HIRGKGLNISHLKAVVLDEADEML 161
           +GG +  ++      ++  +++V TPGRL +     H+R      S  + +VLDEAD +L
Sbjct: 145 VGGTTTTQQDLSFFVRHAPNVLVSTPGRLVELLASPHVR---CTQSSFELLVLDEADRLL 201

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPA----ITTLAKNYQKDAVRVN------IAS 211
           D+GF+ DI+ IL   PK+RR  +FSA++S A    IT   +N  K AVRV       I  
Sbjct: 202 DMGFKQDIQRILGYLPKQRRTGLFSASVSEAVSQIITVGLRNPVKIAVRVKSLRDGGIIE 261

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHL- 268
           + +    +    ++   S +  A+  +L     +   +IVF ST A+V  F  +L   + 
Sbjct: 262 DRKTPVSLQMSYLVTPASQKLPALAKLLENLSPRPQRSIVFLSTCAAVDYFQHLLPTIMP 321

Query: 269 --FQVVALSGELSQQERSNAL-QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
             F +V L G+L  + R  +  + +      V I TD+AARG+D+P ++ V   +  S+P
Sbjct: 322 SGFTIVPLHGKLPPKAREKSFSKFVNSVSPSVLICTDIAARGLDIPQVDFVCQIDPPSDP 381

Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348
           +  +HRSGR GRAGRKG+SV  +
Sbjct: 382 KVFIHRSGRAGRAGRKGLSVVFL 404


>gi|121586999|ref|ZP_01676777.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121548734|gb|EAX58781.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 428

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 175/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +      AL G+ SQ +R  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLKKAGVVATALHGDKSQAQREAALAEFKNGTTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 317 LLARGIHIEQLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362


>gi|147900039|ref|NP_001088376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Xenopus laevis]
 gi|54038539|gb|AAH84638.1| LOC495225 protein [Xenopus laevis]
          Length = 554

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/367 (31%), Positives = 190/367 (51%), Gaps = 40/367 (10%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           N+TSVQ+  +   L  +DVLV +QTGSGKT+A+G+ L   L     +   +  P AL + 
Sbjct: 5   NMTSVQKLTIPALLAGRDVLVRSQTGSGKTMAYGVPLVQALQGVTPKIQRSDGPYALVLV 64

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 65  PTRELALQSFNTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLLDHIK 124

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRMLMFSATISPAITTL 196
             K ++ +  + +++DEAD +LD+GF  D+  I   L+S  + R+ ++ SAT+SP +T L
Sbjct: 125 STKSIHFTRARWLIVDEADRILDMGFEKDVTAILNALNSQCQHRQNVLLSATLSPGVTRL 184

Query: 197 AKNYQKDAVRVNIASENRQHS---------DIDYRAVLVALSDR--DNAIVN-------- 237
           A     D   V IA +N + +           D  +   A+ ++   +A+V         
Sbjct: 185 ADISLNDPFNVTIAEDNSREAKHGGKAKEDKKDSESSCFAMPEKLHQHAVVAPSKLKLVT 244

Query: 238 ----IL-RYHGAKNA--IVFCSTRASVSRFTKVLAEHLF---------QVVALSGELSQQ 281
               IL ++   + A  IVF  +   V  +  +L++ L            + L G + Q+
Sbjct: 245 LATFILGKWKCERKAKMIVFFPSCELVEFYHTLLSKVLTVGDSAMGSDDFLRLHGNMEQE 304

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER+   Q   + +A + + TDVAARG+DLP +  ++     ++    +HR GRT R G +
Sbjct: 305 ERTEVFQQFTNCQAGILLCTDVAARGLDLPQVTWIVQYGAPASAAEYIHRVGRTARLGAQ 364

Query: 342 GMSVFVI 348
           G S+ ++
Sbjct: 365 GSSLLIL 371


>gi|323333724|gb|EGA75116.1| Spb4p [Saccharomyces cerevisiae AWRI796]
          Length = 606

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 23/356 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I   L   G+  +T VQ + +      KDV+V + TGSGKT AF + +   ++ E     
Sbjct: 18  IRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTS 77

Query: 68  RFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F  A    +L IAPTREL+ Q+       LE   +    +    + G +    R D   
Sbjct: 78  KFKKAHFH-SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSN 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   I++GTPGR+ D ++   +  S    VV+DEAD +LD+ F  D E IL   PK+
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+  A + + K   ++ VR+ + S+N+  S +     +V  +++   +V++L
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQLLVSVL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMM 290
             +  K  IV+  T  SVS F   + ++L          +V +L G+L    R+  L   
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFI-QYLGKRNILVNEVEVFSLHGKLQTSARTKTLTAF 315

Query: 291 RDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D  +  V   TDVAARGID+PD++LVI  +  +N +  +HR GRTGRA R G ++
Sbjct: 316 TDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371


>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
 gi|74659326|sp|Q6BRN4|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii]
          Length = 397

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 187/346 (54%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN++     +  AL
Sbjct: 42  GYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRIDENEK-----STQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D 
Sbjct: 96  ILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  +LDEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V   D + + + ++        A++FC+TR+ V
Sbjct: 216 KFMNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+  +L Q +R   +   R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 276 EFLTTKLKGENFTVSAIHADLPQADRDTIMNEFRSGSSRILISTDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++ FV  Q+  M R  E+ +
Sbjct: 336 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTDQDVGMMREIEKFY 381


>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
 gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
          Length = 776

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 211/409 (51%), Gaps = 20/409 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 207 NLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLI-- 264

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P    +   L + PTREL +QV      L   T +   + +GG+ +  +   L+ 
Sbjct: 265 ---YKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRA 321

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  +++ TPGRL DH+       +S ++ ++LDEAD MLD  F + ++ I+     +R+ 
Sbjct: 322 GPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQT 381

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT+S  +  LA    K  VR+ + S    ++D+    R   V +      DR+  +
Sbjct: 382 MLFSATMSEEVKDLASVSLKQPVRIFVNS----NTDVAPYLRQEFVRIRPNKEGDREAIV 437

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D + 
Sbjct: 438 AALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQI 497

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAG+ G SV ++ +  ++ 
Sbjct: 498 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKM 557

Query: 356 AERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKM 403
            + + ++A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 558 LKEIVKKAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEM 606


>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
          Length = 706

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 175/336 (52%), Gaps = 6/336 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP++   A+  +G+   T +Q   +   L  +D++  ++TGSGKT AF + L + L    
Sbjct: 18  IPELY-RAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPLINKL---- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L + PTRELA+Q+   L+ L   + +  ++ +GG     +   L +   
Sbjct: 73  QNHSTVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQFESLASNPD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGR+  H+    L +S ++ V+ DEAD + ++G  D ++ IL   P +++ LMFS
Sbjct: 133 ILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLFEMGLADQLKQILSHLPSQKQSLMFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   ++  A    KD +   +  E +    +    +  A  ++ +A++ ++R      
Sbjct: 193 ATIPEQLSMFASVGLKDYIFCKLDKEFQLPDSMQLHFLFAANDNKLSALIYLIRSLD-DT 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F STR  V   +  L +     V + G++ Q +R   L   +  + +V I TD+A+R
Sbjct: 252 CLIFASTRFLVDMLSYALNKFHISNVHVYGKMDQLDRKEQLDNFKRNQVKVLIVTDLASR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GIDLP +  VIH +  SNP+  +HRSGRT RAG+ G
Sbjct: 312 GIDLPFVANVIHYDYPSNPKIFIHRSGRTARAGKAG 347


>gi|325179839|emb|CCA14242.1| Os08g0159900 putative [Albugo laibachii Nc14]
          Length = 1173

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 6/340 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + + GYV   ++Q   L   +  +DV+  A+TGSGKT+AF L +   +L +         
Sbjct: 586 IQKHGYVEPFAIQRQALPAIMAGRDVIGIAKTGSGKTLAFLLPMFRHILHQPP-LKEGEG 644

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L +AP RELA Q+  E +      G+      GG SV  +  +L+ G+ IV+ TPGR
Sbjct: 645 PIGLIMAPARELAQQIYVEAKRFAKDLGLRATAVYGGSSVSEQIGNLKRGSEIVICTPGR 704

Query: 135 LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           + D +    GK +++  +  VVLDEAD M D+GF   I  I+ +    R+ L+FSAT   
Sbjct: 705 MIDILCMSAGKVVSLQRVSYVVLDEADRMFDMGFEPQITKIIMNIRPDRQTLLFSATFPR 764

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGAKNAIVF 250
           A+ TLA+      V + + + +    DI     +   SD+   ++ +L Y +G  N +VF
Sbjct: 765 AVETLARKVLLKPVEITVGARSTASGDITQYVEVREESDKFMRLLQLLGYWYGKGNVLVF 824

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+ +  +  + L +  +  ++L G   Q +R   +   +     + +AT VA RG+D+
Sbjct: 825 VNTQQTCDQIFQDLMKAGYPALSLHGGKDQIDRDYTIDDFKRQVRTLMVATSVAGRGLDV 884

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            DL LV++    ++ E+ +HR GRTGRAGRKG +  F+ P
Sbjct: 885 KDLVLVVNYHCPNHLEDYVHRVGRTGRAGRKGTAYTFISP 924


>gi|114682557|ref|XP_001166433.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 4 [Pan
           troglodytes]
          Length = 807

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 212/420 (50%), Gaps = 31/420 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 281

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  AP+   L + PTREL +QV      L     +   + +GG+ V  +   L+ 
Sbjct: 282 ---YKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRA 338

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 339 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 398

Query: 183 LMFSATISPA-----------ITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL- 228
           ++FSAT++             +  LA    K+ VR+ + S    ++D+    R   + + 
Sbjct: 399 MLFSATMTDERAEETWLCAWQVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIR 454

Query: 229 ----SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                DR+  +  +L      + ++F  T+    R   +L     QV  L G LSQ +R 
Sbjct: 455 PNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRL 514

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL+  +D +  + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G S
Sbjct: 515 EALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRS 574

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
           V ++ ++ ++  + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M
Sbjct: 575 VSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEM 634


>gi|241896593|ref|ZP_04783889.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
 gi|241870185|gb|EER73936.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
          Length = 452

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 14/366 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+   +   T+VQ  ++   L+ + V+  +QTGSGKT  F + +     A N +  
Sbjct: 13  IYEALTAIHFKQPTTVQSRLIPVILQGRSVVGQSQTGSGKTHTFLVPIFQQYDATNQKVQ 72

Query: 71  PASAPLALAIAPTRELAVQV---GRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG-A 125
                 A+   P+RELA Q+    ++L   + + T   +++ +GG+   R+   LQN   
Sbjct: 73  ------AVITTPSRELAQQIYEAAKQLASTFTEDTQPRISLYVGGMDKSRQIHQLQNKQP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ D  +   L+I     +V+DEAD  LDLGF  D++ I  + P+  +ML+F
Sbjct: 127 QIVIGTPGRIKDLYQAGELDIHTATTLVVDEADMTLDLGFLPDVDAIASAMPEDLKMLVF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y  + V   I SE      I    V      +D  + N+L      
Sbjct: 187 SATIPQKLQPFLKKYLSNPVIEEIPSETVIAPTIKNILVGTKGETKDTLVYNLLTMGNPY 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +T+      TK L     +V  + G +  +ER   +Q ++    +  +ATD+AA
Sbjct: 247 LALVFTNTKTRARELTKSLRSRGLKVAEIHGGIQPRERKRTMQQIQHLDYQYVVATDLAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P + L+I+  + +  E  +HR GRTGR G  G ++ +   + + R + +    N+
Sbjct: 307 RGIDIPGVSLIINDGIPTELEFFIHRVGRTGRNGMSGTAITIYNPDEEDRVQMV---ENM 363

Query: 366 SVVWEP 371
            V +EP
Sbjct: 364 GVKFEP 369


>gi|157422943|gb|AAI53508.1| Eif4a1b protein [Danio rerio]
          Length = 429

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 61  NLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDIE 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 121 ------LKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEVQKLQAEA 174

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  K L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 175 PHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQKLSTSIQVVL 234

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  +   + ++ VR+ +  E      I    + V   + + + + ++     
Sbjct: 235 LSATMPAEVLDVTTKFMREPVRILVKKEELTLEGIRQFYINVEKEEWKLDTLCDLYETLT 294

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q++R   ++  R G +RV I TD+
Sbjct: 295 ITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITTDL 354

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 355 LARGIDVQQVSLVINYDLPTNRENYIH 381


>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 397

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 178/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  +++     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|319653444|ref|ZP_08007544.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
 gi|317394928|gb|EFV75666.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 199/365 (54%), Gaps = 18/365 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E++   I +A  +  +   T+VQ   +   L  +D++  + TG+GKT+A+ L +   + 
Sbjct: 6   IEDMKPFIQKAWEKSAFAQPTTVQAEAVPLALEGRDIIAESPTGTGKTLAYLLPVLENI- 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + D+     A  A+ +A ++EL +Q+  E++     +G+  A  IGG +V R+   L+ 
Sbjct: 65  -DPDK----QAVQAVILASSQELVMQILSEIQKWAEGSGIKAASFIGGANVKRQLEKLKK 119

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI +GTPGR+ + I+ K L +  +K VVLDE D++L       ++ I+ S+ K+R++L
Sbjct: 120 HPHIALGTPGRVLELIKQKKLKMHEVKTVVLDEGDQLLVPEHAQTVQNIVKSTLKERQVL 179

Query: 184 MFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+ P +  LAK    DA  +RV    E  Q + +D+   +    D+   +  I R 
Sbjct: 180 LFSATLPPVVEQLAKELTADAEVIRVE-KDETIQAAGVDHIYFVAEARDKIKMLEKISRL 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVA---LSGELSQQERSNALQMMRDGRARV 297
              K A+VF     +++    V+AE L F+ ++   L  +LS+ +R  A++  R G+  +
Sbjct: 239 EDIK-ALVFVKDIGNLT----VMAEKLDFKNISSSTLHSDLSKFDRQKAIKNFRTGKTNM 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V+H +   +    +HRSGRTGR G  G  + ++ +  +R  +
Sbjct: 294 LIATDVAARGLDIKGVTHVVHFDFPKDMNQYVHRSGRTGRFGASGTVISLVTEREERELK 353

Query: 358 RLFRE 362
           ++ +E
Sbjct: 354 KMAKE 358


>gi|68535988|ref|YP_250693.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68263587|emb|CAI37075.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 382

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 169/344 (49%), Gaps = 12/344 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DVL    TGSGKT  FGL +   L       S    P  + + PTRELA QV   L+ +
Sbjct: 42  RDVLGRGPTGSGKTFTFGLPMIQRL---RRGASKPKKPRGVVLVPTRELATQVRSRLDPI 98

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G  +   +GGV + R    L     I+V TPGR  D +    L+ S +K V +DEA
Sbjct: 99  ANAAGQRLLEVVGGVKIQRNITALARPVDILVATPGRALDLLGQGMLDFSEVKTVAIDEA 158

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D+M D+GF   +  +LD  PK+ + L+FSAT+   +  L   Y +D V     S     +
Sbjct: 159 DQMADMGFLPQVTKLLDRMPKQAQHLLFSATLDGDVQVLVDKYMRDPV---THSTGEATA 215

Query: 218 DIDYRAVLVAL----SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
            +D    L+ +     +R+  IV+I +    K  ++F  T+ +V R  K L       V 
Sbjct: 216 SVDTMRHLLGVVESREERNELIVSIGKLR--KRTVMFMRTKYAVDRQVKKLVRAGVPAVG 273

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G   Q  R  AL+    G+  V +ATD+AARGID+ D+ELV+H +  +  +  +HR+G
Sbjct: 274 IHGNKGQNTRQAALEGFTQGKNTVLVATDIAARGIDVKDVELVVHIDPPAEHKAYVHRAG 333

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           RT RAG  G  V +   + Q   +++  +A V     P   + A
Sbjct: 334 RTARAGASGTVVTLSYADQQADTKKMMAKAGVHPTVLPGAKLVA 377


>gi|294944227|ref|XP_002784150.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
 gi|239897184|gb|EER15946.1| eukaryotic translation initiation factor 4A, putative [Perkinsus
           marinus ATCC 50983]
          Length = 389

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLA 77
           G+   +++Q   + P +  +D +  AQ+G+GKT AF +   +       R  P   A  A
Sbjct: 35  GFEKPSAIQSRAIKPLIAGRDTIGQAQSGTGKTGAFTVGCLA-------RVDPKLRATQA 87

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+    + L     +    CIGG +V  +   L+ G H+VVGTPGR+ D
Sbjct: 88  LILAPTRELAQQITSVTKSLADFLDIRCHACIGGTAVREDIEKLREGQHVVVGTPGRVFD 147

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
               + L +  LK  VLDEADEML  GF+D I  +    P   ++ +FSAT+   I  L 
Sbjct: 148 MANKRHLRLDDLKIFVLDEADEMLSRGFKDQIYDVFRLLPSNVQVALFSATLPDDIIQLT 207

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTR 254
             + +D VR+ + ++      I  R   +A+   +   + + ++        AI++C+TR
Sbjct: 208 TKFMRDPVRILVKTDELTLEGI--RQFYIAIDSEEYKFDTLKDLYETLTITQAIIYCNTR 265

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + + E    V  +  +L+Q+ER   ++  R G +RV I+TD+ ARGID+  + 
Sbjct: 266 RKVDYLAEKMHEADHTVSCMHADLTQEERDLIMREFRSGSSRVLISTDLLARGIDVQQVS 325

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEP 371
           LVI+ ++ ++ EN LHR GR GR GRKG+++ FV+P+++ +  E + R  N  V   P
Sbjct: 326 LVINYDIPASIENYLHRIGRGGRFGRKGVAINFVVPEDISQLRE-IERHYNTQVDEMP 382


>gi|147772471|emb|CAN65105.1| hypothetical protein VITISV_021046 [Vitis vinifera]
          Length = 592

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 179/345 (51%), Gaps = 12/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L +   L    D F   
Sbjct: 167 QACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRL--AEDPF--- 221

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  +   L +   +  AV +GG+ +  + + L    H+V+ TP
Sbjct: 222 -GVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATP 280

Query: 133 GR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR   L +         +  K +VLDEAD +LD+GF +++  +    PK R+ L+FSAT+
Sbjct: 281 GRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 340

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKN 246
           +  + TL +     A         +    +  + + V  + +D  +++IL      G ++
Sbjct: 341 TSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRS 400

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G+  + +ATDVA+R
Sbjct: 401 AIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASR 460

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN
Sbjct: 461 GLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQN 505


>gi|317509542|ref|ZP_07967138.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316252162|gb|EFV11636.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 308

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 3/294 (1%)

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R SP   P  L + PTRELA QV      L A   + VA  +GG+S+ R+  +L  G  +
Sbjct: 6   RASPV-GPDGLVLVPTRELAAQVAAAFAPLAASVNLRVASVVGGLSLSRQADELARGVDV 64

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DHI  + + +  +    LDEAD+M D+GF   +  +LD +PK  + L+FSA
Sbjct: 65  LVATPGRLADHIGQRTVFLDEVSITALDEADQMADMGFLPQVIKLLDQTPKNGQRLLFSA 124

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  L + Y KD V  + A      S +++  + VA  D+   +  I   HG    
Sbjct: 125 TLDGQVDKLVRRYLKDPVTCSTAPAAASVSTMEHHMLFVAPDDKKRVVAEIGARHG--RT 182

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+    R TK L        A+ G  +Q  R+  L+  + G   V +AT+VAARG
Sbjct: 183 IMFVRTKHGADRLTKQLRSVGVSAAAIHGGKAQNNRTRTLEAFKTGDVSVLVATNVAARG 242

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + +  ++LV+H +  ++P++ LHR+GRT RAG  G+ + ++    +R AE + R
Sbjct: 243 VHVDGVDLVVHVDPPADPKDYLHRAGRTARAGESGIVITLVAPAERRDAEAMAR 296


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 22/366 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
                    P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM
Sbjct: 216 VEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLM 275

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           +SAT           + K+     I        +I    +   L  R   ++  +     
Sbjct: 276 WSAT-----------WPKEVRHFYIMC-----GEILSECIFAGLVFRLIQLMEEIMAEKE 319

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATDVA
Sbjct: 320 NKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVA 379

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFR 361
           +RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  ++  
Sbjct: 380 SRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLE 439

Query: 362 EANVSV 367
           EAN ++
Sbjct: 440 EANQAI 445


>gi|312077794|ref|XP_003141459.1| RNA helicase [Loa loa]
 gi|307763377|gb|EFO22611.1| RNA helicase [Loa loa]
          Length = 674

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 176/361 (48%), Gaps = 33/361 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   + +  
Sbjct: 307 LPSEVFDVIMKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITSIP 366

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               ND     + P A+ +APTRELA Q+  E        G+     IGG S   +   L
Sbjct: 367 KFHGND--EQDTGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQGLKL 424

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  +V+ TPGRL D +  + L++     V+LDEAD MLD+GF  +++ +L+  P    
Sbjct: 425 RLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIPVTNL 484

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+SPAI  LA+ Y +    V I S  R  
Sbjct: 485 KPDTEDAEKEESIMENFFSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSVGRPT 544

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
             ++    ++    +   +V ++     +   I+F + +       K L +  FQ   L 
Sbjct: 545 ERVEQIVYMIGEESKRKKLVELISSDAFEPPIIIFVNQKRGADMLAKGLTKLGFQPCVLH 604

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q  R  +L  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRT
Sbjct: 605 GGKGQDAREYSLAALKDGTKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRT 664

Query: 336 G 336
           G
Sbjct: 665 G 665


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 166/324 (51%), Gaps = 7/324 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q+  + P ++ +D +  AQTGSGKT    L++    +A+    +      AL
Sbjct: 51  GFEKPTPIQQRAVMPLIQGRDAIAQAQTGSGKTSMIALSVCQ--VAD----TSVRDVQAL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  R L  L  +  +   VCIGG SV  +   L+ G H+V GTPGRL D 
Sbjct: 105 ILSPTRELATQTERVLIALGDRININAHVCIGGNSVGEDIHKLEKGVHVVSGTPGRLIDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K +VLDEAD ML  GFRD+I       P + ++ + +AT+   +  +  
Sbjct: 165 IKRRTLRTRVIKILVLDEADRMLGRGFRDNIYDAYRYLPPELQVCLITATLPHELIEMTS 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D V++    E+     I    V V   D + + + +I        A++FC+TR  V
Sbjct: 225 KFMTDPVKILAKREDLTLDGIKQWFVAVEREDWKFDTLCDIYDSLTISLAVIFCNTRRKV 284

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +  + F    +  ++  +ER   +   + G  +  I TDV ARGID+  + +VI
Sbjct: 285 DWLTDKMHSNQFTASVMHSDMPNKEREVIMNEFKGGATKALITTDVWARGIDVQQVGIVI 344

Query: 318 HAELSSNPENLLHRSGRTGRAGRK 341
           + +L  N E  +HR GRTG+ GRK
Sbjct: 345 NYDLPQNRELYIHRIGRTGKFGRK 368


>gi|145349596|ref|XP_001419215.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579446|gb|ABO97508.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 340

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 168/320 (52%), Gaps = 19/320 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KDV+  A+TGSGKT+AF       LL              L +APTRELA+Q+  E E  
Sbjct: 1   KDVVAVAKTGSGKTLAF-------LLPMFHGMKRHGGVEGLVVAPTRELAIQIQAEAEKF 53

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLD 155
            A  G    V  GG S + ++  L+     +V+GTPGRL D +  +G L+++ L  +VLD
Sbjct: 54  GAAHGFQSVVVYGGASAYEQKNALRTKKPCLVIGTPGRLTDLMSQEGVLSLAELSVIVLD 113

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY---QKDAVRVNIASE 212
           EAD MLD+GF   I+ I  ++P KR+ L+FSAT   ++  LA  Y    K  V      E
Sbjct: 114 EADRMLDMGFEPQIKQIFGATPTKRQTLLFSATWPKSVRKLAAGYLNQDKSCVEEIFIGE 173

Query: 213 NRQHSD------IDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLA 265
                +      I  R +     ++D  + N I  +      +VF +T+  V    K  A
Sbjct: 174 GASDGELAANKAITQRFIEARDHEKDEHLYNLICEFPDESRVVVFANTKRRVENLAKTFA 233

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              F  V++ G+ SQ +R  +L+   + +A + +ATDVAARG+D+  +  VI+ +++ + 
Sbjct: 234 AEGFGTVSVHGDKSQADREASLRKFVENKAPLMMATDVAARGLDIKGVTHVINYDMARDV 293

Query: 326 ENLLHRSGRTGRAGRKGMSV 345
           E+ +HR GRTGRAG  G +V
Sbjct: 294 ESYVHRIGRTGRAGELGAAV 313


>gi|164659842|ref|XP_001731045.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
 gi|159104943|gb|EDP43831.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
          Length = 606

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 193/400 (48%), Gaps = 30/400 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I + L  +G    T +Q   L      +D++  A TGSGKT+ F L L    +  
Sbjct: 176 KVPDCIIDHLKAKGIQAPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLTFSLPLILFAVEA 235

Query: 66  NDR--FSPASAPLALAIAPTRELAVQ-------VGRELEWL-YAKTGVVVAVCIGGVSVH 115
             R  F     P+ L + P+RELA Q       +   LE+  YA+  +   +CIGG+ + 
Sbjct: 236 ERRLPFEQGEGPVGLIVCPSRELARQTYDSIIAMAEALEYGGYAR--IRTLLCIGGIHMS 293

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G HIVV TPGRL D +  K L +     + LDEAD M+D+GF DD+  IL  
Sbjct: 294 EQSHVLRRGVHIVVATPGRLQDVLEKKRLGLHSCTYLCLDEADRMMDMGFEDDVRNILSF 353

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             ++R+ L+FSAT+   I   A     D V VN+        D+      V+   +   +
Sbjct: 354 FTRQRQTLLFSATMPKKILDFAAQSLFDPVIVNVGRAGAASLDVVQEVEYVSQESKMTQL 413

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L+   A   IVF   +  V    + L     + VA+ G  +Q ER  A++  + G+ 
Sbjct: 414 LEALQ-KTAPRVIVFSDNKNEVDDIHEFLLRKGVEAVAIHGSKTQDEREYAIESFKSGKK 472

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +A+ +A++G+D  +++ VI+  +  + E+ +H+ GRTGR+G+ G++   +    PQ+
Sbjct: 473 DVMVASGIASKGLDFSNIQHVINYTMPKDIEDYVHQIGRTGRSGKTGVATTFVNAQTPQS 532

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                + L  EA   V     PS       DA   LQDPL
Sbjct: 533 TMLDLKYLLLEAKQHV-----PSF-----FDA---LQDPL 559


>gi|45383077|ref|NP_989880.1| eukaryotic initiation factor 4A-II [Gallus gallus]
 gi|82213243|sp|Q8JFP1|IF4A2_CHICK RecName: Full=Eukaryotic initiation factor 4A-II; Short=eIF-4A-II;
           Short=eIF4A-II; AltName: Full=ATP-dependent RNA helicase
           eIF4A-2
 gi|21435808|gb|AAM53975.1|AF515726_1 translational eukaryotic inititation factor 4AII [Gallus gallus]
 gi|53132817|emb|CAG31939.1| hypothetical protein RCJMB04_14a6 [Gallus gallus]
          Length = 407

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 172/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  +
Sbjct: 39  NLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEID 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 99  ------LKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + ++ +R+ +  E      I    + V   + + + + ++     
Sbjct: 213 LSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 273 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDL 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 333 LARGIDVQQVSLVINYDLPTNRENYIH 359


>gi|85000681|ref|XP_955059.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65303205|emb|CAI75583.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 451

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 197/381 (51%), Gaps = 18/381 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P+++  A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  E  
Sbjct: 63  PEIL-RAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEAE 121

Query: 66  ------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
                 +D   P S    + I+ TRELA Q+  E +        V   V  GGV + ++ 
Sbjct: 122 EGKRDADDNVKPVSRVSCVGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKDV 181

Query: 119 RDLQNGA---HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILD 174
             L++ A   HI+VGTPGRL   ++ K LN+  +K  VLDE D+ L+ L  R D++ I  
Sbjct: 182 AMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQDVQSIFL 241

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRD 232
           S+PKK++++ FSAT++  I  L K + +  V V +  E++   H  + Y  V +A SD++
Sbjct: 242 STPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQY-YVKLAESDKN 300

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++L        I+F  + +       +L E  F  +A+   L Q ER N     ++
Sbjct: 301 RKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERINRYTQFKN 360

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
              R+ +ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++ FV    
Sbjct: 361 FDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAITFVSSPE 420

Query: 352 MQRRAERLFREANVSVVWEPA 372
              + E + +   V++   PA
Sbjct: 421 DSSQLEDVQKRFEVNISEIPA 441


>gi|302920275|ref|XP_003053036.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733976|gb|EEU47323.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 621

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 182/360 (50%), Gaps = 24/360 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E ++  GY N T +Q+  +   L+  DV+  AQTGSGKT A+ + + S L+ +  + 
Sbjct: 131 VMLENVNLCGYDNPTPIQKFTIPSILQGHDVIGIAQTGSGKTAAYLIPILSKLMGKAKKL 190

Query: 70  SPA---------------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           + A               + PL L I PTRELA+Q+  E      +T +   V  GGV +
Sbjct: 191 AAARPNPLTFREGLDEVTAEPLVLIIVPTRELAIQIFNEARKFCYRTMLRPGVVYGGVPI 250

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +   L  G  ++VGTPGRL D I R K L +  L+ +V+DEADE+LDL + +DI+ IL
Sbjct: 251 REQIGLLGKGCDVLVGTPGRLVDFIQRPKYLTLRRLRYMVIDEADELLDLDWNEDIDKIL 310

Query: 174 DSSPKKR---RMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALS 229
               +     +  +FSAT   +   LAKNY     VR  +       ++I    +     
Sbjct: 311 SGGEQDEGNVKFSLFSATFPKSARDLAKNYLAASHVRFRVGRAGSTTANIKQIVLPAEPH 370

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++ + ++ +L        I+F ++R +       L      V ++  + +QQER  A++ 
Sbjct: 371 EKRDILLGLLEEMHGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQQEREAAMRS 430

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGRKGMSV 345
            R G A + IAT V+ARGID+ ++  VI+ +L S      E   HR GRTGR G +G++ 
Sbjct: 431 FRSGNAPILIATGVSARGIDVRNVVHVINYDLPSMDHGGIEEYTHRIGRTGRIGHRGIAT 490


>gi|224012647|ref|XP_002294976.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969415|gb|EED87756.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 387

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 187/348 (53%), Gaps = 19/348 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I +A+++ GY + T VQ   L   L   D L++A TGSGKT+++   +   ++ + +
Sbjct: 2   PELI-KAIAKSGYDSPTIVQSQTLPVALSGNDALITAATGSGKTLSYIWPMIIHIMDQPE 60

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  P+ + + PTRELA QV +  + ++ A  G V  V  G        ++L+ G  
Sbjct: 61  IMPGVDGPIGIVLIPTRELAKQVYKYAKLFMEACGGKVCEVSGGNRGTWELTKELKKGCE 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++ KG N+  +  VVLDEAD MLD+GF   +  IL++   +R+ L+ S
Sbjct: 121 IIVSTPGRLIDMVKKKGTNLQRVTFVVLDEADRMLDMGFEKQVSSILENVRPQRQTLLLS 180

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI------VNILR 240
           AT    +  +A+++ K+ VR+ I         +D    ++ L  R+  I      + +L 
Sbjct: 181 ATFGKRVERVARSWLKNPVRIAIGRTGASSEHVDQH--VMCLPSREAKIQWLVEMLPVLS 238

Query: 241 YHGAKNAIVFCSTRA-------SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             G    +VF +TRA        V+    ++      VV++ G+  Q++R++A+   +  
Sbjct: 239 PLG--RCLVFVATRADCDLLSEKVTNSQALVGNDNSTVVSIHGDKDQRDRNSAIYQFKKN 296

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
              + IATDVAARG+D+PD+  VI+ + + N ++ +HR GR GR  ++
Sbjct: 297 SQAILIATDVAARGLDIPDVMTVINFDAAKNIDSHVHRIGRAGRMSKE 344


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 178/341 (52%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G++  T VQE ++   L+ + V+V A TGSGKT A+ + + + +  E+ R+ 
Sbjct: 14  IRQGLAKIGFIKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAI-DEDARYV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNGAHI 127
            A     +  AP+RELA Q+ R    L   +G+ +A+        R+R   R  QN   +
Sbjct: 73  QA-----IVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNKPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|307103042|gb|EFN51307.1| hypothetical protein CHLNCDRAFT_28229 [Chlorella variabilis]
          Length = 518

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/407 (30%), Positives = 207/407 (50%), Gaps = 35/407 (8%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +P  +   + L E  Y +LT+VQ A L   L  +DVL +A+TGSGKT+AF L + 
Sbjct: 68  KRFDELPISEYSKQGLREAKYFSLTAVQRAALPHALCGRDVLGAAKTGSGKTLAFLLPVV 127

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R+S      AL I+PTRELA+Q+  EL  +  +      + IGG  V  E+ 
Sbjct: 128 EKLY--RARWSKLDGLGALVISPTRELALQIFDELRKVGRRHDFSAGLLIGGKDVKEEQA 185

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            + +G +I+V TPGRL  H+    G +   L+ +VLDEAD +LD+GF   +  I+ + P+
Sbjct: 186 RV-HGMNILVCTPGRLLQHMDETPGFDAGQLQVLVLDEADRILDMGFSATLNAIVANIPR 244

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--VLVALSDRDNAIV 236
           +R+ L+FSAT + ++  LA+   KD   +++ +E    + +  +   ++  L  + + + 
Sbjct: 245 QRQTLLFSATQTKSVKDLARLSLKDPEYISVHAEAAAPTPLRLQQAYMVCELPQKLDILW 304

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV----------ALSGELSQQERSNA 286
           + ++ H     IVF ST   V RF       LF+            AL G+++Q +R   
Sbjct: 305 SFIKTHLKAKTIVFVSTCKQV-RF-------LFEAFRKLRPGVPLRALHGKMNQYKRMGV 356

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
                + +A V  ATD+AARG+D P ++ V+ A+   +    +HR GRT R    G  + 
Sbjct: 357 FYEFCEAKAMVLFATDIAARGLDFPTIDWVVQADCPEDVPAYIHRVGRTARYMSSGKGLL 416

Query: 347 VIPQNMQRRAERLFREA---------NVSVVWEPAPSVEAIRERDAQ 384
           ++  + +        EA         N S V   AP+++A+  +D +
Sbjct: 417 LLVPSEKEGMLAQLEEAKVPMKQLKHNPSKVQPVAPALQALLSKDGE 463


>gi|113969304|ref|YP_733097.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113883988|gb|ABI38040.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 451

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 178/338 (52%), Gaps = 13/338 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST----------LLAENDRFSPAS 73
           T VQ+  +   L  +DVL  +QTGSGKT+AFGL L             L       S AS
Sbjct: 40  TRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLLQAIHQQLQQQVGLAGAESVPSLAS 99

Query: 74  APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV   L  L +K  + + + +  GG++   +  +L     +VV T
Sbjct: 100 NAQALVLVPTRELAQQVTTALHALASKLSSSLKIQLLCGGIAQEEQLAELAAKPQLVVAT 159

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D      +++  +K +VLDEAD +L++GF  D++ ++    K+++ L+FSAT+  
Sbjct: 160 PGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWPDVQKLMAMMLKRKQTLLFSATLPE 219

Query: 192 AITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           A+  LA K    + +RV  ++ N   ++I+ R   V    +  A++ +L+ +     +VF
Sbjct: 220 ALDALAGKLLTNNPLRVEASTRNAIAAEIEERLYFVNKGSKAQALIALLKQYQWPQVLVF 279

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            S R       K L +      AL GE  Q  RS  L   +  R +V +ATD+ ARGI +
Sbjct: 280 ISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFKANRIQVVVATDLMARGIHV 339

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             L +VI+ +L ++    +HR GRT RAG KG+++ ++
Sbjct: 340 DALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 377


>gi|237716307|ref|ZP_04546788.1| ATP-independent RNA helicase [Bacteroides sp. D1]
 gi|262407911|ref|ZP_06084459.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646741|ref|ZP_06724364.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CC 2a]
 gi|294807729|ref|ZP_06766522.1| DEAD/DEAH box helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229443954|gb|EEO49745.1| ATP-independent RNA helicase [Bacteroides sp. D1]
 gi|262354719|gb|EEZ03811.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637901|gb|EFF56296.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CC 2a]
 gi|294445165|gb|EFG13839.1| DEAD/DEAH box helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 444

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 20/371 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILSNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAAEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSASSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S ++I    ++    +  E
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTS-YLILHAEEKLPSYILEE 351

Query: 363 ANVSVVWEPAP 373
             + V+ E  P
Sbjct: 352 MEIVVLPENPP 362


>gi|257866121|ref|ZP_05645774.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257872451|ref|ZP_05652104.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257875753|ref|ZP_05655406.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
 gi|257800055|gb|EEV29107.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257806615|gb|EEV35437.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257809919|gb|EEV38739.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
          Length = 448

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 177/338 (52%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+++ +   T VQE ++    + + V+  +QTGSGKT  F L L   + AE D   
Sbjct: 12  IYEALADKKFSKPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLMDKIDAEKDEVQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+    + +  +    + V+  +GG    R+   LQN   H+
Sbjct: 72  ------VVITAPSRELATQIYHAAKQIGGFHDPEIRVSNFVGGTDKQRQLSRLQNQQPHV 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGR+ D I  + L +      V+DEAD  LD+GF ++++ I    P+K +ML+FSA
Sbjct: 126 VIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLPEKLQMLVFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y  + +   I S+      I+   +     + +  I  +L       A
Sbjct: 186 TIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQLLTTGHPYLA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T++ V   T  L E   +V  + G++S +ER   ++ +++   +  +ATD+AARG
Sbjct: 246 IVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQYVVATDLAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +  VI+AE+ ++ +  +HR GRTGR    G ++
Sbjct: 306 IDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAI 343


>gi|332886086|gb|EGK06330.1| hypothetical protein HMPREF9456_00204 [Dysgonomonas mossii DSM
           22836]
          Length = 446

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 11/335 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS  G  NL  +Q A     +  ++ L+ + TGSGKT+AF L +   L  +  +    
Sbjct: 9   DILSNLGIGNLNKMQFAAQKAIIDSQNTLLLSPTGSGKTLAFLLPIFRLLKEDIKKVQ-- 66

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L I P+RELA+Q+  E  W    T   V VC GG S+  E ++L N   +++GTP
Sbjct: 67  ----CLVIVPSRELALQI--EQVWKKMGTQFKVNVCYGGHSIDTELKNLSNPPALLIGTP 120

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K  +   ++ +VLDE D+ L LGF+++++ I+   P  ++ ++ SAT    
Sbjct: 121 GRLTDHLERKSFDTDSIRILVLDEFDKSLQLGFQEEMDTIISQLPNLQKRVLLSATSDVE 180

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I       QK  V   I  E  +  ++  + VL    D+  ++ +++    ++ A++FC+
Sbjct: 181 IPEFV-GMQKPVVLDYIQEE--KSDNLSIKLVLSPEKDKIESLFHLICSFNSEPALIFCN 237

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R    R + +L +   Q     G + Q +R   L   R+G     I TD+AARG+D+P+
Sbjct: 238 HREVTERISDLLNKKGVQTGYYHGGMDQDDRERILIQFRNGSLNYLITTDLAARGLDIPE 297

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ++ VIH  L +     +HR+GRT R    G S  +
Sbjct: 298 MKHVIHYHLPAKESEFVHRNGRTARMHASGTSYII 332


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 179/346 (51%), Gaps = 6/346 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  +I   +++ GY   T +Q+  +      +D++  AQTGSGKT AF + +
Sbjct: 161 IKKFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLVPI 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG SV  + 
Sbjct: 221 LNLLLTDAVDLE-IGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQN 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
             +  G H+++ TPGRL D +    +     + +V+DEAD MLD+GF + +  I+     
Sbjct: 280 ESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTM 339

Query: 178 -KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + LMFSAT    I  +A  +  + + V I       SD+      V   ++   ++
Sbjct: 340 RAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRRKLI 399

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+   A   IVF  T+         L+E      ++ G+  Q +R  AL+  + G+ +
Sbjct: 400 DILK-ESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           V IAT VA+RG+D+ +++ V++ ++    ++ +HR GRTGR G  G
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNG 504


>gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 741

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 191/357 (53%), Gaps = 23/357 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS+ GY   + +Q A +   L  +D++  A TGSGKT A+ + +   LL    + S  
Sbjct: 235 KGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLY---KPSKV 291

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-----AVCIGGVSVHRERRDLQNGAHI 127
           ++   + + PTRELA+QVG     +  K G  V      + +GG+++ ++ + L++   +
Sbjct: 292 ASTRVIVLTPTRELAIQVGD----VGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDV 347

Query: 128 VVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMF 185
           V+ TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++  IL   PK KR+ L+F
Sbjct: 348 VIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLLF 407

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-----R 240
           SAT++  I  L +   +  VR+ I       + +      V +  RD+    +L     +
Sbjct: 408 SATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQE--FVRIRKRDHLKPALLFQLLKK 465

Query: 241 YHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              A+ +  +VF S + S  +   VL     +V  L G L+Q++R N +   +     V 
Sbjct: 466 LDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVL 525

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR G S+  + ++   R
Sbjct: 526 ICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDR 582


>gi|67522985|ref|XP_659553.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|74657502|sp|Q5BBY1|HAS1_EMENI RecName: Full=ATP-dependent RNA helicase has1
 gi|40745958|gb|EAA65114.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|259487308|tpe|CBF85879.1| TPA: ATP-dependent RNA helicase has1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BBY1] [Aspergillus
           nidulans FGSC A4]
          Length = 609

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 197/367 (53%), Gaps = 19/367 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +     L A   RF P 
Sbjct: 141 QGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSAL--RFKPR 198

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 199 NGTGVIVVSPTRELALQIFGVARELLTAHSQT---YGIVIGGANRRAEAEKLTKGVNLLI 255

Query: 130 GTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH++   G    +LK +V+DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 256 ATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTMLFSA 315

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS ++      V+     R   + + L+ + 
Sbjct: 316 TQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNL 374

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +  V I TDV
Sbjct: 375 KKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICTDV 434

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFR 361
           AARG+D+P ++ +I  +   +  + +HR GRT R   GR    +F+ P  +     +  +
Sbjct: 435 AARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVG--FLKYLK 492

Query: 362 EANVSVV 368
           EA V VV
Sbjct: 493 EARVPVV 499


>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 753

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 179/351 (50%), Gaps = 11/351 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 134 NLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLERLL-- 191

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P   P    L + PTRELAVQV   ++ L   T V  A+ +GG+S   +   L+ 
Sbjct: 192 ---YRPRRIPAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRA 248

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH++    + +  L  +VLDEAD +L+LGF  ++  ++   PK+R+ 
Sbjct: 249 RPDIVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQT 308

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--AL-SDRDNAIVNIL 239
           ++FSAT++  ++ L        VR++     ++   +    V +  AL +D++  ++ + 
Sbjct: 309 MLFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALC 368

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F   +    R   +      +   L G L+Q  R +AL+  R       I
Sbjct: 369 TRTFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLI 428

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ATDVAARG+D+  +E VI+    S+    +HR GRT RAGRKG +V  + +
Sbjct: 429 ATDVAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTE 479


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|223997538|ref|XP_002288442.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975550|gb|EED93878.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 421

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 182/356 (51%), Gaps = 31/356 (8%)

Query: 36  REKDVLVSAQTGSGKTVAFGLALASTLLAE----NDRFSPASAPLALAIAPTRELAVQVG 91
           R  DV+  A+TGSGKT+AF +   S +  +    N+R     +P  L +APTRELA+Q  
Sbjct: 23  RHCDVVGIAETGSGKTLAFSMPALSIMAKDSSSTNNR---GRSPRMLVLAPTRELAMQSQ 79

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
           + LE       +   V  GGV    ++  L+ G   +V TPGRL D +     ++S++  
Sbjct: 80  KVLEEFGKVVNLSSLVIYGGVPKPAQKDILRKGVDCIVCTPGRLKDLVNEGSCDLSNISH 139

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           +VLDEAD MLD+GF +D+ +I+    +K  R+  MFSAT   AI  LA  +  + + + +
Sbjct: 140 LVLDEADRMLDMGFEEDVRYIISQCKEKEQRQTAMFSATWPAAIQQLALEFMMEPICIYV 199

Query: 210 ASE-----NRQHSDIDYRAVLVALSDRDNAIVN----------ILRYHGAKNA----IVF 250
             E     N ++S  D  +    +S     I +          I +Y G K      +VF
Sbjct: 200 GFESIVGSNGENSIDDSLSANKRVSQTVEVIEDRAREERLRELIKKYTGGKRKNDRILVF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +   +R    L    F   ++ G+ +Q  R+ AL   +DG   + +ATDVAARG+D+
Sbjct: 260 ALYKKEAARIEGTLNRWGFSCASIHGDKTQDARNRALAEFKDGSCPILVATDVAARGLDI 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           PD+E+V++       E+ +HR GRTGRAG+ G+S  F  P +     E  ++ R+A
Sbjct: 320 PDVEVVLNYTFPLTIEDYVHRIGRTGRAGKSGISYTFFQPGDKSHAGELQQVMRQA 375


>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 538

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 194/362 (53%), Gaps = 23/362 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + ++LS       T++Q++ +   L+ KD +  ++TGSGKT+AF + +       
Sbjct: 114 NVAPWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVPILQKW--A 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   L    
Sbjct: 172 EDPF----GIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQRP 227

Query: 126 HIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP- 177
           H+++ TPGRL DHIR  G    + ++ ++ +V+DEAD +L  G      D+E  L + P 
Sbjct: 228 HVIIATPGRLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETCLSALPP 287

Query: 178 -KKRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSD 230
             +R+ L+F+AT++P   A+ ++ +   +  + V  I +EN       +    + V ++ 
Sbjct: 288 SSERQTLLFTATVTPEVRALKSVPRPANRPPIHVTEIGTENIAPIPPTLKQTYLQVPMTH 347

Query: 231 RDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  +L   G  +K AI+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 348 REAFLHVLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERTANLS 407

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVA+RG+D+P++ LVI+ ++  NP++ +HR GRT RAGR G SV ++
Sbjct: 408 RFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVTLV 467

Query: 349 PQ 350
            Q
Sbjct: 468 GQ 469


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 186/377 (49%), Gaps = 14/377 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L  A   L +
Sbjct: 9   DLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP-ALQYLQD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A + L + PTRELA+Q+  +   L   T + +    GGV        L    
Sbjct: 68  FPRKKAGPARM-LILTPTRELAMQITDQARELAKYTALNIFTITGGVMYQEHADILGTTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+F
Sbjct: 127 DIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRWRKQTLLF 186

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +    ++   +   ++  S  R+   I         ++    ++  +    A
Sbjct: 187 SATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEHKLDLLKHIITKEA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + +IVF  TR  +     +L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   ER+ R   
Sbjct: 307 ARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQLMIERVARYTK 366

Query: 365 VSVVWEPAPSVEAIRER 381
                      EAI+ER
Sbjct: 367 -----------EAIKER 372


>gi|159489242|ref|XP_001702606.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280628|gb|EDP06385.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 602

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 174/338 (51%), Gaps = 11/338 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +A+   GY + T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 155 NISRPLLKAVEALGYKSPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPFLERLL-- 212

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    +A   L + PTRELAVQ+   +E L   T + VA+ +GG+S+  +   L+   
Sbjct: 213 -HRPRGLAATYVLVLTPTRELAVQIHSMIEKLAQFTDINVALIVGGLSLQVQAITLRQSP 271

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+R  + + +  L  +VLDEAD +L++GFR+++  ++ ++P+KR+ ++
Sbjct: 272 EVVVATPGRLIDHLRNSQSVGLEDLAVLVLDEADRLLEMGFREEVAEVVRAAPRKRQTML 331

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR-----QHSDIDYRAVLVALSDRDNAIVNIL 239
           FSAT +  +  L     K  VR+   +            +  +    A +     +    
Sbjct: 332 FSATFNDQVRDLVALSLKQPVRLAADAARAAPKLLTQEIVRLKGPAAAATKEAVCLALCA 391

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           R  G +   IVFCST+    R   +     L     L G +SQ  R  +L+  R G    
Sbjct: 392 RSFGDRGRTIVFCSTKTKAHRLKILFGLAGLPPAAELHGNMSQTARLESLESFRRGDTAF 451

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
            +ATDVAARG+D+  +E+V++ +     E  LHR GRT
Sbjct: 452 LLATDVAARGLDIQGVEVVVNYDAPPKLETYLHRIGRT 489


>gi|19074678|ref|NP_586184.1| ATP-DEPENDENT RNA HELICASE (DEAD box family) [Encephalitozoon
           cuniculi GB-M1]
 gi|74664181|sp|Q8SR49|SPB4_ENCCU RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|19069320|emb|CAD25788.1| ATP-DEPENDENT RNA HELICASE (DEAD box family) [Encephalitozoon
           cuniculi GB-M1]
          Length = 463

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 190/340 (55%), Gaps = 19/340 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + E G+  +T VQ   +   L+ KDV+V + TG+GKT+AF   + S +     R  P   
Sbjct: 19  IEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVT 78

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ I PTRELA+Q+ RE+  L+    V     IGG+S+  + + ++    I VGTPGR
Sbjct: 79  --AVVITPTRELALQI-REVAGLF---DVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L + +  +    S L  +VLDEAD++L  GF + +  +L   P+ R   +FSAT + ++ 
Sbjct: 133 LLEIVGKETKKFSSLSHLVLDEADKLLGFGFEEKLMQLLAKLPRNRVTGLFSATRNDSVD 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ + ++ V +N+ + N     ++Y  ++V+  ++   +++I+     +  IVF +T 
Sbjct: 193 KLSRVFLRNPVSINVGN-NEMPVALEY--IVVSPMEKLLVLMDIVT---GRRCIVFFATC 246

Query: 255 ASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQ--MMRDGRARVCIATDVAARGIDLP 311
           + V  F+ +++   F  +  + G++SQ ER+   +    RDG   +   TDVAARGID  
Sbjct: 247 SEVDFFSGLVSRAGFGNICKIHGKISQDERNRVYEEFFQRDG---LLFCTDVAARGIDFR 303

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
            ++LV+H ++     +++HRSGRT R G KG SV FV+P 
Sbjct: 304 GVDLVVHFDVPKEYSSIVHRSGRTARNGSKGESVLFVMPN 343


>gi|297736137|emb|CBI24175.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 179/345 (51%), Gaps = 12/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L +   L    D F   
Sbjct: 64  QACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRL--AEDPF--- 118

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  +   L +   +  AV +GG+ +  + + L    H+V+ TP
Sbjct: 119 -GVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATP 177

Query: 133 GR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR   L +         +  K +VLDEAD +LD+GF +++  +    PK R+ L+FSAT+
Sbjct: 178 GRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 237

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKN 246
           +  + TL +     A         +    +  + + V  + +D  +++IL      G ++
Sbjct: 238 TSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRS 297

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G+  + +ATDVA+R
Sbjct: 298 AIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASR 357

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN
Sbjct: 358 GLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQN 402


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 178/330 (53%), Gaps = 11/330 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A TGSGKT+AFG+  A T +       P   P+ L +APTRELA Q  +  +  
Sbjct: 359 RDMVGIAATGSGKTLAFGMP-ALTQIRSQPPCKPGQ-PICLVLAPTRELAQQTAKVFDDA 416

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQ--NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
              +GV      GG   + ++  ++   GA ++V TPGRL D +    + +  +  +VLD
Sbjct: 417 GEASGVRCVCVYGGAPKYEQKNAMKAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLD 476

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD MLDLGF  +I  I  ++   R+ +MFSAT   ++ +LA  +  + VRV I SE  +
Sbjct: 477 EADRMLDLGFEPEIRAIAGATRADRQTVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLK 536

Query: 216 HSDIDYRAV-LVALSDRDNAIVNILR-YHGAKN----AIVFCSTRASVSRFTKVLAEHLF 269
            S    + V +V   D+D  +  +++ Y G+       ++F   +   +   + L+   +
Sbjct: 537 ASQSITQIVEVVEPQDKDRHLARVMKQYLGSPKDCPRTLIFGLYKKECANLHQRLSRE-W 595

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V + G++SQ +R  +++  + G +R+ IATDVAARG+D+  +E VI+       E+ +
Sbjct: 596 PAVCIHGDMSQADRERSVEAFKKGTSRILIATDVAARGLDIKGVEYVINYTFPLTTEDYV 655

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           HR GRTGRAG  G++     Q+ + RA  L
Sbjct: 656 HRIGRTGRAGATGLAHTFFTQHDKARAGEL 685


>gi|90407101|ref|ZP_01215290.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
 gi|90311823|gb|EAS39919.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
          Length = 465

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 188/349 (53%), Gaps = 17/349 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  G+   TS+Q   + P + E+D++ SA TG+GKT+AF L     L+ +  R    
Sbjct: 18  DAISLMGHTRPTSIQLLAIPPAMDEQDIMASAPTGTGKTLAFLLPAIQRLI-DFPRRKGG 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           SA + L + PTRELA+Q+    + L   T +VV   IGGVS   +   + +   IV+ TP
Sbjct: 77  SARI-LILTPTRELAMQISGVAQQLTQATSLVVGNIIGGVSYQEQEAIITDNVDIVIATP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL ++I  +  +   +++++LDEAD MLD+GF ++++ I   +  +++  +FSAT+   
Sbjct: 136 GRLMEYIDAEAFDCREVESLILDEADRMLDMGFINEMDRIAGETRWRKQTSLFSATLEGK 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV------------ALSDRDNAIVNIL 239
            +   +++   + + +N     R+   I+    L              L D +N   +  
Sbjct: 196 GLRDFSRDVLNEPLALNAIISRRESGKINQWIHLADSPEHKLKLLAELLKDENNDADSEE 255

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   AK  IVF  TR  ++     LAE       L GE+ Q++R+ AL   ++ +  + I
Sbjct: 256 KI--AKKIIVFVKTRERLAFLVSQLAELNIHCNYLRGEMDQEKRTLALAQFKEDKVNILI 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+ D+  VI+ +L  + +  +HR GRT R G+KG ++ +I
Sbjct: 314 ATDVAARGIDVADITHVINYDLPRSADIYVHRIGRTARGGKKGTAISLI 362


>gi|222623996|gb|EEE58128.1| hypothetical protein OsJ_09027 [Oryza sativa Japonica Group]
          Length = 575

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 132/430 (30%), Positives = 204/430 (47%), Gaps = 77/430 (17%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAEN 66
           PQV+      +G+   + +Q       L  +D +  A TGSGKT+AFG+ AL        
Sbjct: 103 PQVLDCC---KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMG 159

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ +    P  L ++PTRELA Q+   L    A  G+      GG S   +   L++G  
Sbjct: 160 EKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVD 219

Query: 127 IVVGTPGRLCDHIR-----------------------------------GKGLNISHLKA 151
           IV+GTPGR+ D I                                     KG  IS LK+
Sbjct: 220 IVIGTPGRMKDLIEMGICRLNDVSFVIADVLCEAGAPCGISSVCLYGGTSKGPQISALKS 279

Query: 152 ----------------------------VVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
                                       VVLDEAD MLD+GF  ++  IL  +   R+ +
Sbjct: 280 GVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTV 339

Query: 184 MFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL- 239
           MFSAT  PA+  LA+ +   + ++V I SE+   ++ D   ++  L D  RD+ +V +L 
Sbjct: 340 MFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLA-ANHDVMQIVEVLDDRSRDSRLVALLD 398

Query: 240 RYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +YH A+    +VF   +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   +
Sbjct: 399 KYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPL 458

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRA 356
            IATDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++  F   +N     
Sbjct: 459 MIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAG 518

Query: 357 E--RLFREAN 364
           E   + REA 
Sbjct: 519 ELVNVLREAG 528


>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
 gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
          Length = 786

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 175/337 (51%), Gaps = 7/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   T +Q   L   L   DV+  A+TGSGKT AF + +   L A     S
Sbjct: 35  IYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEKLRAH----S 90

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL ++PTRELA+Q  +  + L   T + + V +GG S+  +   L     I++ 
Sbjct: 91  PKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSKNPDILIA 150

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL  H+   +G+++  ++ VV DEAD + ++GF + +  IL    + R+ L+FSAT+
Sbjct: 151 TPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQTLLFSATL 210

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNA 247
              +   AK   KD + V + +E +   D+      +   ++   +V++LR      +  
Sbjct: 211 PRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLREVVSAEQQT 270

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF ST+  V    +VL      +  + G + Q  R   +   R  +  + + TDVAARG
Sbjct: 271 VVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILLVTDVAARG 330

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ID+P L+ V++ +  + P+  +HR GR  RAGR G +
Sbjct: 331 IDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTA 367


>gi|119177270|ref|XP_001240430.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|303316075|ref|XP_003068042.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|118593421|sp|Q1DQ20|IF4A_COCIM RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|240107718|gb|EER25897.1| Eukaryotic translation initiation factor 4A, putative [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 398

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++     L + D  +   A  AL
Sbjct: 44  GFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISA----LQKVD--TNLKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     V    CIGG +V  + + L +G  +VVGTPGR+ D 
Sbjct: 98  ILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 158 IQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLDVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +         I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ GE+ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLIARDFTVSAMHGEMEQNQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|47228482|emb|CAG05302.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 599

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 187/358 (52%), Gaps = 22/358 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L E  + ++T VQ A +   +  KDV   A TGSGKT+AF + +   LL   ++  
Sbjct: 20  ILETLGELKFSHMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPIIELLLKREEKLK 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQN-GAHIV 128
                 AL I PTRELA+Q+ + +E    +      +  IGG +   +    ++ GA+IV
Sbjct: 80  KMQVG-ALVITPTRELALQISQVMEQFLQRFPQFTQILLIGGSNPIEDVEKFKDQGANIV 138

Query: 129 VGTPGRLCDHIRGK--GLNIS----HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           + TPGRL D  + K  GL+++     L+ +VLDEAD +LD+GF   +  IL   PK+RR 
Sbjct: 139 IATPGRLEDMFKRKADGLDLACWVKSLEVLVLDEADRLLDMGFEASLNAILGHLPKQRRT 198

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASE-------NRQHSDIDYRAVLVALSDRDNAI 235
            +FSAT +  +  L +   ++ VR+ +  +        +  S +     +    D+ N +
Sbjct: 199 GLFSATQTQELEKLVRAGLRNPVRITVKEKGAAASAVQKTPSRLSNYYTICRSEDKFNHL 258

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ---VVALSGELSQQERSNALQMMRD 292
           V  LR H  +  +VF ST A V  F + L E L +   V  + G++ + +R+      R 
Sbjct: 259 VAFLRQHKHEKNLVFFSTCACVEYFGRAL-ETLIKKANVCCIHGKM-KDKRNKIFAEFRS 316

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            ++ + + TDV ARGID+PD+  V+  +  S+    +HR GRT R G +G + VF++P
Sbjct: 317 LKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTARIGNQGNALVFLLP 374


>gi|16077810|ref|NP_388624.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308581|ref|ZP_03590428.1| hypothetical protein Bsubs1_04163 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312906|ref|ZP_03594711.1| hypothetical protein BsubsN3_04119 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317830|ref|ZP_03599124.1| hypothetical protein BsubsJ_04073 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322104|ref|ZP_03603398.1| hypothetical protein BsubsS_04164 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815767|sp|O34750|YFML_BACSU RecName: Full=Putative ATP-dependent RNA helicase yfmL
 gi|2443255|dbj|BAA22326.1| YfmL [Bacillus subtilis]
 gi|2633067|emb|CAB12572.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 376

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 196/365 (53%), Gaps = 10/365 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N    I E  +  G+   T VQE      +  KDV+  + TG+GKT+A+ L +     
Sbjct: 8   LHNAQSFIQENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVL---- 63

Query: 64  AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              +R  P    P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+
Sbjct: 64  ---ERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLK 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VGTPGR+ + I+ K L +  +K +VLDE D+++    R+ ++ I+ ++ + R++
Sbjct: 121 KHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQL 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+      + +   ++   + +     +   + ++ ++    D+   +  + R  
Sbjct: 181 LCFSATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLE 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G + A+VF     ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD
Sbjct: 241 GMQ-ALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++
Sbjct: 300 IAARGLDIENLPYVIHADI-PDEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKK 358

Query: 363 ANVSV 367
             V +
Sbjct: 359 LGVEL 363


>gi|225462242|ref|XP_002263207.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 582

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/345 (33%), Positives = 179/345 (51%), Gaps = 12/345 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L +   L    D F   
Sbjct: 157 QACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPILHRL--AEDPF--- 211

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+  +   L +   +  AV +GG+ +  + + L    H+V+ TP
Sbjct: 212 -GVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQTLMQRPHVVIATP 270

Query: 133 GR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR   L +         +  K +VLDEAD +LD+GF +++  +    PK R+ L+FSAT+
Sbjct: 271 GRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCLPKNRQTLLFSATM 330

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RYHGAKN 246
           +  + TL +     A         +    +  + + V  + +D  +++IL      G ++
Sbjct: 331 TSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLLHILSKMEEMGIRS 390

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G+  + +ATDVA+R
Sbjct: 391 AIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSGQVPILLATDVASR 450

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN
Sbjct: 451 GLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQN 495


>gi|82539888|ref|XP_724299.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478899|gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii]
          Length = 967

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 28/373 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  L
Sbjct: 549 NLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL 608

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+ 
Sbjct: 609 PPLTYETSQDGPYALIIAPSRELAIQIYDETNKFASYCSCRTVAVVGGRNAEAQAFELRR 668

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
           G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P      
Sbjct: 669 GVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLKS 728

Query: 180 --------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                               R   MFSAT+ P++  L++ Y +    ++I         I
Sbjct: 729 EDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSI 788

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + +   +    +   +  +L  +     IVF + +       K +++  F+ +AL G   
Sbjct: 789 EQKLEFITEGKKKQKLQELLEIYEPP-IIVFVNQKKVADIIAKSISKMKFRAIALHGGKV 847

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 848 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 907

Query: 340 RKGMSV-FVIPQN 351
            KG+++ FV  Q+
Sbjct: 908 MKGLAISFVTEQD 920


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 197/374 (52%), Gaps = 17/374 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LA 59
           F   P++I E++   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 246 FHPYPELI-ESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLN 304

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  ++  +R    + P  L + PTRELA+QV  E    Y+  G+      GG +  ++ R
Sbjct: 305 NQPISREER----NGPGMLVLTPTRELALQVEAECS-KYSYKGLKSICIFGGRNREQQIR 359

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPK 178
           D+  G  I++ TPGRL        +N+  +  +VLDEAD+MLDLGF   I + +LD  P 
Sbjct: 360 DITKGIDIIIATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPD 419

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
            R+ +M SAT S  I  L ++Y K+ + V + + +    +   + V++   +   +++  
Sbjct: 420 -RQTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQE 478

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L+    ++  IVF   R      +  L+     V +L G+  Q +R  AL+  R G+ +
Sbjct: 479 FLQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVK 538

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G+S+ ++ QN  + A
Sbjct: 539 VLIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIA 598

Query: 357 ERL---FREANVSV 367
             L    + AN SV
Sbjct: 599 TELIKILKRANQSV 612


>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
 gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
          Length = 672

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 188/357 (52%), Gaps = 23/357 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS+ GY   + +Q A +   L  +D++  A TGSGKT A+ + +   LL    + S  
Sbjct: 172 KGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPIIERLLY---KPSKV 228

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-----AVCIGGVSVHRERRDLQNGAHI 127
           ++   + + PTRELA+QVG     +  K G  V      + +GG+++ ++ + L++   +
Sbjct: 229 ASTRVIVLTPTRELAIQVGD----VGKKIGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDV 284

Query: 128 VVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMF 185
           V+ TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++  IL   PK KR+ L+F
Sbjct: 285 VIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIPKNKRQTLLF 344

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-------AIVNI 238
           SAT++  I  L +   +  VR+ I       + +      V +  RD+        ++  
Sbjct: 345 SATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQE--FVRIRKRDHLKPALLFQLLKK 402

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        +VF S + S  +   VL     +V  L G L+Q++R N +   +     V 
Sbjct: 403 LDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFKKLIVPVL 462

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR G S+  + ++   R
Sbjct: 463 ICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGESTSDR 519


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/364 (30%), Positives = 192/364 (52%), Gaps = 20/364 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPASAPLA 77
           G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   + L + D         A
Sbjct: 42  GFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKD-------LQA 94

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
           L ++PTRELA Q+G+ ++ L     V      GG ++  + + +Q +G   V GTPGR+ 
Sbjct: 95  LILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL 154

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD--LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D I+ + L   +++ +VLDEADE+L   LGF+  I  I    PK  ++++ SAT++  I 
Sbjct: 155 DMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDIL 214

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            + + +  D V++ +  +      I    V V   + + + + +I         ++FC+T
Sbjct: 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNT 274

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+TDV  RGID+  +
Sbjct: 275 KKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWXRGIDVQQV 334

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAERLFREANVSVVWE 370
            LVI+ +L    E  +HR GR+GR GRKG+++ F+   ++   R  E+ +     S+   
Sbjct: 335 SLVINYDLPEIIEXYIHRIGRSGRFGRKGVAINFITKADLAKLREIEKFY-----SIKIN 389

Query: 371 PAPS 374
           P P+
Sbjct: 390 PMPA 393


>gi|294932648|ref|XP_002780372.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239890305|gb|EER12167.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 566

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 192/370 (51%), Gaps = 14/370 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +     L+A   RF 
Sbjct: 81  LKEALTACSFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPALELLVAT--RFQ 138

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIV 128
           P +    + I+PTRELA+Q+    + L   T +     + +GGV+   E   L  G +I+
Sbjct: 139 PKNGTGVMIISPTRELAMQIFDVCKRLVDSTKLSQTYGIVMGGVNRKNEADKLSRGINIL 198

Query: 129 VGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH++  +G   ++L ++V+DEAD +L +GF +D+  IL   PKKR+  +FSA
Sbjct: 199 VATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPKKRQTSLFSA 258

Query: 188 TISPAITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +  +  LA+   K  + V     +        S +    V+V   DR   +   L+ +
Sbjct: 259 TQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLRLLFTFLKKN 318

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+++ G+  Q  R           + + + TD
Sbjct: 319 QKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQMESGILLCTD 378

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P ++ ++  +   +P+  +HR GRT R   G     +F++P+ +     R  
Sbjct: 379 VAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEELG--FLRYL 436

Query: 361 REANVSVVWE 370
           R++ V+ + E
Sbjct: 437 RKSGVTTLNE 446


>gi|41393175|ref|NP_958918.1| eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|29612461|gb|AAH49427.1| Eukaryotic translation initiation factor 4A, isoform 1B [Danio
           rerio]
 gi|122890762|emb|CAM13210.1| eukaryotic translation initiation factor 4A isoform 1B [Danio
           rerio]
          Length = 406

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 172/329 (52%), Gaps = 12/329 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 38  NLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDIE 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEVQKLQAEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  K L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQKLSTSIQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRY 241
            SAT+   +  +   + ++ VR+ +  E      I  R   + +   +   + + ++   
Sbjct: 212 LSATMPAEVLDVTTKFMREPVRILVKKEELTLEGI--RQFYINVEKEEWKLDTLCDLYET 269

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++F +TR  V   T+ +    F V AL G++ Q++R   ++  R G +RV I T
Sbjct: 270 LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITT 329

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLH 330
           D+ ARGID+  + LVI+ +L +N EN +H
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 189/346 (54%), Gaps = 9/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     L+
Sbjct: 6   FQLDPSLL-ESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQHLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R+S  +  L L   PTRELA Q+ R    L    G+ +A+  GGV    +   L++
Sbjct: 65  DFPRRYSGHARILILT--PTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEALKD 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ +
Sbjct: 123 NIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQNM 182

Query: 184 MFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNIL 239
           +FSAT+    +   A+    D + +++ +  ++ + I ++ + +A  D+++ I     +L
Sbjct: 183 LFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKI-HQWIHLA-DDKEHKIALLCYLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARGID+ D+  VI+ ++  + ++ +HR GRTGRAG KG ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAI 346


>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 182/354 (51%), Gaps = 10/354 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+   T +Q   +   L  KD+  +A+TGSGKT A+ L +   LL +N+     +
Sbjct: 184 AVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPILERLLYKNN---AQN 240

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L +APTRELA QV      L   T +   + +GG+ +  +  DLQ    IVV TPG
Sbjct: 241 LIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQRRPDIVVCTPG 300

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           R+ DH+     +++  ++ V+LDEAD +L+LGF +++  +L   P KR+ L+FSAT++  
Sbjct: 301 RMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQTLLFSATMTDD 360

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIV 249
           ++ L     +  VRV +   N+    +D     + + D   R   +++I+  H     I+
Sbjct: 361 VSDLISLSLQKPVRVFVDPVNQV---VDRLVQFIRVKDESLRTAMLLSIITRHFKTETII 417

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +A       +L     +   L G L+Q +R  AL           IATDVAARG+D
Sbjct: 418 FAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLIATDVAARGLD 477

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +  ++ VI+  +       +HR GRT RAG  G +V  + ++ +   ++L ++A
Sbjct: 478 IKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFVEEDRRLLMKKLVKQA 531


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/377 (31%), Positives = 194/377 (51%), Gaps = 23/377 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F N P ++ E L ++G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 295 FGNYPDLM-EELRKQGFTKPSPIQSQGWPVLLLGEDMIGIAQTGTGKTLAFLLPAFIHIE 353

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-Q 122
            ++   S    P  L +APTRELA+Q+ +E+     +   + AVC+ G    R + ++ +
Sbjct: 354 GQSTPRSERGGPNVLVLAPTRELALQIEKEVSKYQFRD--IKAVCLYGGGDRRAQMNVVR 411

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      R+ 
Sbjct: 412 SGVEIIIATPGRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQT 471

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--------SDRDNA 234
           +M SAT    +  LA++Y  D ++V + +       +D  AV             D+ + 
Sbjct: 472 VMTSATWPDGVRRLAQSYMHDPIQVYVGT-------LDLAAVHTVTQHIECLDEEDKYHR 524

Query: 235 IVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           I+  ++    K+  I+FC  +      +     +     ++ G   Q +R  AL+ ++ G
Sbjct: 525 IMKFVKQMEPKDKVIIFCGKKTRADDLSSEFVLNDIGCQSIHGNREQADREQALEDIKKG 584

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
             R+ IATDVA+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G S+ FV   + 
Sbjct: 585 TVRILIATDVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGTSLSFVTRSDW 644

Query: 353 QRRAE--RLFREANVSV 367
              AE  ++  EA   V
Sbjct: 645 AVAAELIKILEEAQQEV 661


>gi|67524949|ref|XP_660536.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
 gi|74657405|sp|Q5B948|IF4A_EMENI RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|40744327|gb|EAA63503.1| hypothetical protein AN2932.2 [Aspergillus nidulans FGSC A4]
          Length = 421

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P   A  A
Sbjct: 67  GFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKL-------DPNVKACQA 119

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  +   L+ G  IVVGTPGR+ D
Sbjct: 120 LIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHD 179

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 180 MIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 239

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 240 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 299

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 300 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 359

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 360 INYDLPANRENYIH 373


>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
 gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
          Length = 821

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 175/337 (51%), Gaps = 7/337 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ ++GY   T +Q   L   L   DV+  A+TGSGKT AF + +   L A     S
Sbjct: 64  IYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEKLRAH----S 119

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P     AL ++PTRELA+Q  +  + L   T + + V +GG S+  +   L     I++ 
Sbjct: 120 PKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLSKNPDILIA 179

Query: 131 TPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL  H+   +G+++  ++ VV DEAD + ++GF + +  IL    + R+ L+FSAT+
Sbjct: 180 TPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQTLLFSATL 239

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNA 247
              +   AK   KD + V + +E +   D+      +   ++   +V++LR      +  
Sbjct: 240 PRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLREVVSSEQQT 299

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF ST+  V    +VL      +  + G + Q  R   +   R  +  + + TDVAARG
Sbjct: 300 VVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILLVTDVAARG 359

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ID+P L+ V++ +  + P+  +HR GR  RAGR G +
Sbjct: 360 IDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTA 396


>gi|550331|emb|CAA57418.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 566

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 27/374 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I EA+ + GY   + +Q   +   L  +D+L  A+TGSGKT AF + +    +++
Sbjct: 151 NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPML-IYISK 209

Query: 66  NDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             R +    A  P AL +APTREL  Q+ +E        G  V   +GG S+  +   + 
Sbjct: 210 QPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVS 269

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G  I++ TPGRL D +  + L ++    +VLDEAD M+DLGF   +  +LD+ P     
Sbjct: 270 KGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLK 329

Query: 180 ------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                             R  ++FSAT+ P +  L+K Y +    + I    +    I  
Sbjct: 330 SEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQ 389

Query: 222 RAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V + +D+   +  +++       I+F + +        VL E       L    SQ
Sbjct: 390 TVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQ 449

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IAT VA+RGI +  +  VI+ ++  N E+  HR GRTGRAG 
Sbjct: 450 EQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 509

Query: 341 KGM-SVFVIPQNMQ 353
            G+ S F+  ++++
Sbjct: 510 AGLASSFITDKDVE 523


>gi|261201117|ref|XP_002626959.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239594031|gb|EEQ76612.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis SLH14081]
 gi|239607095|gb|EEQ84082.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ER-3]
          Length = 553

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 196/362 (54%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   ++ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 130 PWLVG-SLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAF----AAPILQKWA 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 185 EDPF----GVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 240

Query: 126 HIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           HIV+ TPGRL DHI   G +    ++  + VVLDEAD +L  G      D+E  L + P 
Sbjct: 241 HIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSALPP 300

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQ--HSDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  I++EN+      +    + V L+ 
Sbjct: 301 STSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPLTH 360

Query: 231 RDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  +L    +  K +I+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 361 REAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTANLS 420

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++
Sbjct: 421 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 480

Query: 349 PQ 350
            Q
Sbjct: 481 GQ 482


>gi|229031934|ref|ZP_04187921.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
 gi|228729398|gb|EEL80388.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
          Length = 436

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 179/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    P+  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPRNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
 gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
          Length = 398

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 174/356 (48%), Gaps = 12/356 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  A   L +  R  P  
Sbjct: 17  AIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP-ALQYLQDFPRRKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+QV  +   L   T + +    GGV        L     +VV TPG
Sbjct: 76  ARV-LILTPTRELAMQVAEQARALAKHTKLNIFTITGGVQYQEHADILGKTQDVVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++  ++SAT+    
Sbjct: 135 RLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQTHLYSATLEGKG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY---HGAKNAIV 249
           +     +  KD   ++     R+   I   A     +D       +L++     A   IV
Sbjct: 195 VEGFTADLLKDPAEIDAEPSRRERKKI---AQWYHRADDMQHKFELLKHIITEQADRTIV 251

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  +      L         + GE+ Q  R+NA+   RDG   V +ATDVAARGID
Sbjct: 252 FLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVAARGID 311

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFRE 362
           LPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++    Q M  R  R  +E
Sbjct: 312 LPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMMDRVARYVKE 367


>gi|296412374|ref|XP_002835899.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629696|emb|CAZ80056.1| unnamed protein product [Tuber melanosporum]
          Length = 547

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 7/330 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 133 FPSYVMNEVKAQGFAAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 192 PLLAPGDGPIVLVLAPTRELAVQIQQEVA-KFGKSSRIRNTCVYGGVPKGPQVRDLSRGV 250

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL      R+  M+
Sbjct: 251 EVLIATPGRLIDMLETNKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMW 310

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA ++  D ++VNI S   +  H+      V+     RD  I ++ +   
Sbjct: 311 SATWPKEVRQLASDFLNDFIQVNIGSLELSANHNIQQIVEVINDYDKRDRLIKHLEKVMD 370

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            KN+  ++F  T+ +    T+ L +  +  +A+ G+  Q ER   L   + G++ + +AT
Sbjct: 371 DKNSKCLIFTGTKRTADDITRFLRQDGWPCLAIHGDKQQTERDWVLNEFKTGKSPIMVAT 430

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHR 331
           DVA+RGID+ ++  VI+ +  +N E+ +HR
Sbjct: 431 DVASRGIDVRNITHVINFDYPNNSEDYVHR 460


>gi|328868659|gb|EGG17037.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 834

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 185/368 (50%), Gaps = 26/368 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + EA++++GY   + VQ   +   L  +DVL  A+TGSGKT AF + +    +++
Sbjct: 415 SLPADMLEAIAKQGYEKPSPVQMQAIPVALSGRDVLGIAETGSGKTAAFVIPML-VYISK 473

Query: 66  NDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             R +  S    P A+ +APTRELA+Q+ +E        G      +GG  +  +   L 
Sbjct: 474 QPRMTKESEQDGPYAVVMAPTRELALQIEKEARVFANFLGYRTVALVGGQPIEEQIYQLS 533

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G  IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF   +E +LD+ P     
Sbjct: 534 KGCEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADMMIDMGFELQVESVLDAMPSAFLK 593

Query: 180 ------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                             R  +++SAT+ P +  L++ Y +  V V I    +    I  
Sbjct: 594 SENEEEAEKQERDRHRVYRTTILYSATMPPKVERLSRKYLRRPVHVIIGEAGKAVDRIKQ 653

Query: 222 RAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V + +D+   + ++L        IVF + +       +++ E      +L    SQ
Sbjct: 654 TVIFVKSDNDKHQQMSSLLTSGPPPPIIVFVNKKKHCEIIMEIVQECGLSSTSLHSGRSQ 713

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IATDVA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG 
Sbjct: 714 EQREMALEGFKKRKYGVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGRTGRAGM 773

Query: 341 KGMSVFVI 348
           +G++  +I
Sbjct: 774 EGLASSLI 781


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 182/351 (51%), Gaps = 10/351 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+++ E L    Y   T +Q+  ++      D++ +AQTGSGKT A  + + + L   N
Sbjct: 538 CPEIM-ENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIINYLKMSN 596

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                ++       + +APTRELA Q+  E  ++    T VV  +C GG     + + ++
Sbjct: 597 IGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTREQSQRIR 656

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G +IV+GTPGR+ D +    ++ S  + +VLDEAD MLD GF  DI  I    P K   
Sbjct: 657 EGCNIVIGTPGRMKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYLPPKDTG 716

Query: 180 -RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R   +FSAT   AI + A++Y + + + V I      ++ +  +   +   ++ N  V 
Sbjct: 717 KRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREKFNRTVE 776

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I + +  K  ++F +T+        +L     +   + G+  Q++R  A+  ++  R  V
Sbjct: 777 ICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLKANRMHV 836

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVAARGID+ D+E+VI+ +     E+ +HR GRT R G+KG+++  I
Sbjct: 837 LVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFI 887


>gi|193890969|gb|ACF28638.1| translation initiation factor 4A [Amphidinium carterae]
          Length = 331

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 165/320 (51%), Gaps = 7/320 (2%)

Query: 27  QEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86
           Q+  + P +  +D +  AQ+G+GKT  F   +  +L   + R         L +APTREL
Sbjct: 1   QQRAIRPVIDGRDTIGQAQSGTGKTATF---VIGSLZRVDFRLRECQT---LILAPTREL 54

Query: 87  AVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           A Q  + +  L     V    C+GG +       L+ G H+VV TPGR+ D I    L +
Sbjct: 55  ADQTNKVVLALGDYCNVQSHACVGGSNYKDSISRLREGQHVVVATPGRVYDMINKGYLKV 114

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
            HL   + DEAD ML  GF+D +  I  + P   ++ +FSAT++P +  L   + +D VR
Sbjct: 115 DHLLTFICDEADVMLSKGFKDQLYDIFKTLPSDVQVCLFSATMAPEVLDLTSKFMRDPVR 174

Query: 207 VNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
           + +  +      I    V +   D + + + ++         I++ + R  V      L+
Sbjct: 175 ILVKKDELTLEGIHQYYVAIEKEDWKLDTLCDLYECVTISQCIIYSNYRRKVDSLAHELS 234

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +  F V  +  +L Q+ER+  ++  R+G  RV I+TD+ ARGID+  + LVI+ ++  + 
Sbjct: 235 KRDFAVSIIHADLDQEERNLVMKEFRNGATRVLISTDLLARGIDVQQVSLVINYDMPMDM 294

Query: 326 ENLLHRSGRTGRAGRKGMSV 345
           EN LHR GR+GR GRKG+++
Sbjct: 295 ENYLHRIGRSGRFGRKGVAI 314


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 203/418 (48%), Gaps = 29/418 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P V+   +   GY   T +Q  ++   L  +D+L SA TGSGKT AF L      L +
Sbjct: 376 QFPPVLSSNIKAAGYEVPTPIQMQMIPVGLMGRDILASADTGSGKTAAFLLPAIIRCLEK 435

Query: 66  NDRFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            D      +P AL + PTRELAVQ+ G+  E +     +  A+ +GG+ +  +   L+ G
Sbjct: 436 KD------SPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHRLKQG 489

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL + I+   +N+  LK +++DEAD ML +GF+  +  IL+  P   + ++
Sbjct: 490 VQVIIATPGRLLEIIKQDSVNLGDLKILIVDEADTMLKMGFQQQVLDILEVVPHDHQTIL 549

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
            SATI   I    K   +D VR+ +  +N+  +++    + V    +   +  IL     
Sbjct: 550 VSATIPAGIEAFTKQLLQDPVRITVGEKNQPCTNVRQIVLWVEEPSKKKKLFEILNDSKL 609

Query: 244 -AKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +VF   R      +  +++    + VA+  + SQ ER   LQ +  G   V ++T
Sbjct: 610 FQPPVLVFVDCRLGADLLSDAVSKITGLECVAMHSDKSQVERMKILQGLLQGEYDVVVST 669

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G +G ++  I +N          
Sbjct: 670 GVLGRGLDLVNVKLVVNFDMPSSMDEYVHQIGRAGRLGHRGTAITFINKN---------- 719

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             N ++ W      + ++       L  P  L+S    E+K VD  L + D EK+  G
Sbjct: 720 --NRNLFW------DLVKRVQPTGSLLPPQLLNSPYVQEQKKVDERL-RRDKEKVVTG 768


>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 388

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 177/349 (50%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + Q + +A+   GY   T++Q   +   L+  D++ +AQTG+GKT +F L +   L   E
Sbjct: 8   LSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPILEKLAKGE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA Q+ +++        +      GGV    +++ L  G 
Sbjct: 68  TQRKKRVRA---LILTPTRELAQQIEQKVRDYGQNLSLTSLAMYGGVDEKPQKQALIEGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D    + ++   ++ +V+DEAD MLD+GF DDI  ILD  P   + L+F
Sbjct: 125 DILIATPGRLLDMYGKRAVHFEEIEVLVMDEADRMLDMGFIDDINKILDRLPTDIQHLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +   
Sbjct: 185 SATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITVDKDKKSALLSHMIKENNWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +   +  A     SQ  RS  L   + G+ +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLLADFKAGKIKYMIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+  L  VI+ +L    +  +HR GRTGRA  +G ++ FV   N +
Sbjct: 305 RGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFK 353


>gi|13161879|emb|CAC33024.1| hypothetical protein [Takifugu rubripes]
          Length = 476

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 197/405 (48%), Gaps = 33/405 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T VQE  +   L+  D +  A+TGSGKT AF L +   L    D +        L
Sbjct: 21  GIQKATPVQENCVPAILQGSDCMGCAKTGSGKTAAFVLPVLQKL--SEDPY----GIFCL 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTR LA Q+  +   L    G+   + +GG+ +  +  +L N  H+VV TPGRL DH
Sbjct: 75  VLTPTRSLAYQIAEQFRVLGKPLGLKDCIIVGGMGMVTQALELSNQPHVVVATPGRLADH 134

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           IR     +++ ++ +V+DEAD +L+ G   F  D+E IL + P KR+ L+FSAT++  + 
Sbjct: 135 IRSSSTFSLAKIQFLVMDEADRLLEQGCTDFTKDLETILTAVPAKRQTLLFSATLTDTLQ 194

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY----HGAKNAIVF 250
            L              SE R   ++D R +L     +D  +V++++     H   + I+F
Sbjct: 195 ELKHIAMNKPFFWESKSECRTVEELDQRYILTPEKVKDAYLVHLIQTFTDQHDDWSIIIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            ST       T +L +  F  ++L   + Q +R   L   +    ++ IATDVAAR +D+
Sbjct: 255 TSTCKYCQILTMMLQKFHFPTISLHSMMKQVQRFANLAKFKASVYKILIATDVAARCLDI 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSV 367
           P +++VI       P+  +HR GRT RAG  G+S+ ++ Q   ++    E   RE  +  
Sbjct: 315 PTVQVVITNNTPGLPKIYIHRVGRTARAGN-GVSITLVTQYDIHLVHSIEEQIRETKLKE 373

Query: 368 VWEPAPSVEAIRERDAQRIL-------QDPLFLDSIQGDEKKMVD 405
                     + E++  +IL       ++   L+S   DEKK ++
Sbjct: 374 F--------PVEEKEVLKILTQVNVTRRECEILESTDFDEKKEIN 410


>gi|294777226|ref|ZP_06742682.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294448940|gb|EFG17484.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 439

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 174/332 (52%), Gaps = 20/332 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIA 81
           L  +QEA +N     KD+++ + TGSGKT+A+ L L  +L        P  +   A+ + 
Sbjct: 16  LNPMQEASINAWKEGKDLILLSPTGSGKTLAYLLPLVQSL-------KPGITGVQAIVLV 68

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIR 140
           P+RELA+Q+ +  + +   T      C GG     E R ++     +++GTPGR+ DH+ 
Sbjct: 69  PSRELALQIDQVFKSM--NTPFKAVSCYGGRPAMEEHRTIKGMQPSVIIGTPGRMNDHLS 126

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLA 197
            +  +   +  +V+DE D+ L+ GF++++  ++   P  +R  + SAT +   P  T L 
Sbjct: 127 KQNFDADTVTTLVIDEFDKCLEFGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLD 186

Query: 198 KNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K      +++N  +   Q +  +    VL    D+   +  +L   G+++ +VFC+ R S
Sbjct: 187 K-----TIKLNFLNPEEQLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNHRES 241

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  K L    FQ     G + Q +R  +L   R+G   V I+TD+AARG+D+P++E V
Sbjct: 242 VERVGKYLQSQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPEIENV 301

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +H  L +N +  +HR+GRT R   +G S  ++
Sbjct: 302 VHYHLPANEDGYIHRNGRTARWEAEGNSYVIL 333


>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 184/350 (52%), Gaps = 26/350 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A  E G    T VQ+  +   L  KDV   AQTGSGKT AF L +   L AEN       
Sbjct: 58  ACKELGMKRPTLVQQGCVPQILAGKDVFGLAQTGSGKTAAFALPILQKL-AEN-----PY 111

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA Q+  + + L ++  +   V +GG+ +  + + L    HIV+ TPG
Sbjct: 112 GVFALVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQAKALMQRPHIVIATPG 171

Query: 134 RLCDH-IRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           RL DH +   G+    +  K +VLDEAD ++D+GF  ++  + ++ P  R+ L+FSAT++
Sbjct: 172 RLRDHFMNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFETMPSNRQTLLFSATMT 231

Query: 191 PAITTL-------AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---LR 240
             +  L       A  YQ+      + +  +Q+       +L   + +D  +++I   L 
Sbjct: 232 SNLKALHDLSLDKAFFYQQYEGFKTVEALQQQY-------ILTPANVKDVYLMHIMSTLE 284

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ I+F S+  +    + +++E      AL    +QQ+R  +L   + G+  + IA
Sbjct: 285 ERKIRSVIIFASSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRFKSGQVSILIA 344

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           TDVA+RG+D+P ++LVI+ ++     + +HR GRT RAGR G +V +I Q
Sbjct: 345 TDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQ 394


>gi|169852452|ref|XP_001832910.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
 gi|116506045|gb|EAU88940.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
          Length = 640

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/334 (32%), Positives = 183/334 (54%), Gaps = 7/334 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+  +TS+Q   +   L  KDVL +A+TGSGKT+AF   + +  L    +F P +
Sbjct: 119 ALKDMGFETMTSIQAKSIPVLLAGKDVLGAARTGSGKTLAF--LIPAVELLHRLKFKPVN 176

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + + PTRELA+Q+    + L A       V IGG +   E   L  G +++V TPG
Sbjct: 177 GTGIIILTPTRELALQIFGVAKDLMAYHSQTFGVVIGGANPKAEVDKLSKGVNLLVATPG 236

Query: 134 RLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           RL DH++  KG    +L+A+V+DEAD +L++GF ++++ I+   P + R+ ++FSAT + 
Sbjct: 237 RLLDHLQNAKGFVYRNLRALVIDEADRILEIGFEEEMKRIISILPNENRQSMLFSATQTT 296

Query: 192 AITTLAK-NYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +T LA+ + +   V V++  E      S +    V+ +   R   +   L+ +  K  I
Sbjct: 297 KVTDLARISLRPGPVHVDVDKEEATSTVSTLSQGYVVCSSDMRFRLLYTFLKKNLKKKVI 356

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+ L G+  Q +R+N      +  + + + TDVAARG+
Sbjct: 357 VFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQMKRTNTFFEFINAESGILLCTDVAARGL 416

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           D+P ++ ++  +   +P + +HR GRT RAG+ G
Sbjct: 417 DIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVG 450


>gi|257486807|ref|ZP_05640848.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 410

 Score =  167 bits (422), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 181/334 (54%), Gaps = 14/334 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL---ALAIAPTRELAVQVGREL 94
           +D+ V+AQTGSGKT AF L + + L+       PA   +   A+ + PTRELA Q  +E+
Sbjct: 3   RDLRVTAQTGSGKTAAFVLPILNRLIG------PAKVRVDIRAVILLPTRELAQQTLKEV 56

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
           E     T V   +  GG     +   L+    I++GTPGRL + +    L++ H++ +VL
Sbjct: 57  ERFSQFTFVKAGLITGGEDFKVQAAMLRKVPDILIGTPGRLLEQLNAGNLDLKHVEVLVL 116

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA-ITTLAKNYQKDAVRVNIASEN 213
           DEAD MLD+GF +D+E +      + + ++FSAT   A +  +     KD   + + S +
Sbjct: 117 DEADRMLDMGFSEDVERLAGECAGREQTMLFSATTGGAGLREMIGKVLKDPQHLQVNSVS 176

Query: 214 RQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
              S   ++ +    +     ++N +L     + AI+F +T+A   R    L    ++  
Sbjct: 177 ELASGTRHQIITADHNVHKEQVLNWLLANETYQKAIIFTNTKAMADRLYGRLVALEYKAF 236

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G+  Q++R  A+  ++ G A++ +ATDVAARG+D+  L++VI+ ++  + ++ +HR 
Sbjct: 237 VLHGDKDQKDRKAAIDRLKQGGAKIMVATDVAARGLDVEGLDMVINFDMPRSGDDYVHRV 296

Query: 333 GRTGRAGRKGMSVFVIPQ---NMQRRAERLFREA 363
           GRTGRAG  G+++ +I     N+    ER  +++
Sbjct: 297 GRTGRAGSDGLAISLICHGDWNLMSSVERYLKQS 330


>gi|320164285|gb|EFW41184.1| ATP-dependent RNA helicase dbp4 [Capsaspora owczarzaki ATCC 30864]
          Length = 963

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 180/342 (52%), Gaps = 12/342 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +  YV LT +Q   L   L  +DVL +A+TGSGKT+AF L +   L     R+S   
Sbjct: 211 ALRDCAYVKLTEIQRVSLPDGLAGRDVLGAAKTGSGKTLAFLLPVVERLY--RLRWSSED 268

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ I PTRELA Q+   L  + A+  +   + IGG  V +E+  + NG +I+V TPG
Sbjct: 269 GIGAIVITPTRELAFQIFEVLRKIGARHELAAGLVIGGKDVEQEKERI-NGMNILVCTPG 327

Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL  H+      + S+L+ +VLDEAD +LD+GF   ++ ILD  P+ R+ L+FSAT + +
Sbjct: 328 RLLQHMDETPNFDCSNLQMLVLDEADRILDMGFARTLDAILDFLPRSRQTLLFSATQTKS 387

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  LA+     +       E+ +HS    +    V+ AL D+ + + + +R H +   +V
Sbjct: 388 VRDLAR-LSLTSPEYAAVHEHAKHSTPKGLSQSYVVTALPDKLDILYSFIRTHTSSKTLV 446

Query: 250 FCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           F S+   V RF       L     ++AL G+  Q +R           + V  ATD+AAR
Sbjct: 447 FLSSCKQV-RFVLETFRRLRPGVPLMALYGKQKQMKRMAIYSDFAKKPSAVLFATDIAAR 505

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D P +  VI  +   +    +HR GRT RA + G ++ ++
Sbjct: 506 GLDFPAVHWVIQVDCPEDASTYIHRVGRTARADKSGNALLMV 547


>gi|150005747|ref|YP_001300491.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934171|gb|ABR40869.1| ATP-independent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 437

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 174/332 (52%), Gaps = 20/332 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIA 81
           L  +QEA +N     KD+++ + TGSGKT+A+ L L  +L        P  +   A+ + 
Sbjct: 14  LNPMQEASINAWKEGKDLILLSPTGSGKTLAYLLPLVQSL-------KPGITGVQAIVLV 66

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIR 140
           P+RELA+Q+ +  + +   T      C GG     E R ++     +++GTPGR+ DH+ 
Sbjct: 67  PSRELALQIDQVFKSM--NTPFKAVSCYGGRPAMEEHRTIKGMQPSVIIGTPGRMNDHLS 124

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLA 197
            +  +   +  +V+DE D+ L+ GF++++  ++   P  +R  + SAT +   P  T L 
Sbjct: 125 KQNFDADTVTTLVIDEFDKCLEFGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLD 184

Query: 198 KNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K      +++N  +   Q +  +    VL    D+   +  +L   G+++ +VFC+ R S
Sbjct: 185 K-----TIKLNFLNPEEQLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNHRES 239

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  K L    FQ     G + Q +R  +L   R+G   V I+TD+AARG+D+P++E V
Sbjct: 240 VERVGKYLQSQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPEIENV 299

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +H  L +N +  +HR+GRT R   +G S  ++
Sbjct: 300 VHYHLPANEDGYIHRNGRTARWEAEGNSYVIL 331


>gi|170582010|ref|XP_001895938.1| ATP-dependent RNA helicase DDX18 [Brugia malayi]
 gi|158596969|gb|EDP35219.1| ATP-dependent RNA helicase DDX18, putative [Brugia malayi]
          Length = 547

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 180/348 (51%), Gaps = 16/348 (4%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++  ++ E    A++E G+  +T +Q   + P L+ +DV+ SA+TGSGKT+AF +   
Sbjct: 65  FASLENILSESTLLAITEMGFTKMTEIQAKCIEPLLQGRDVIASAKTGSGKTLAFLIPAV 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
             L+    +    +    + I+PTREL++Q    L  + AK   +   + +GG +   E 
Sbjct: 125 ELLIKLEWKARNGTG--VIVISPTRELSMQTYGVLSEILAKHPTLTHGLIMGGANRQAEA 182

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L  G   +V TPGRL DH++   G  + +LK +++DEAD +LD+GF  +++ IL   P
Sbjct: 183 QKLARGVSFLVATPGRLLDHLQNTDGFMVKNLKCLIIDEADRILDIGFEIEMQQILRVLP 242

Query: 178 KKRRMLMFSATISPAITTLAKN-YQKDAVRVNIASENRQH-------SDIDYRAVLVALS 229
           KKR+ + FSAT +P +  L K     D V+V I   N ++       S +    V+    
Sbjct: 243 KKRQTMFFSATQTPKVDELVKAALHTDPVKVGINKINPKNGSELATVSGLQQGYVVCPSE 302

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            R   +   L+ +  K  +VF S+  SV    ++L      V  + G+  QQ+R+     
Sbjct: 303 KRFLLLFTFLKKNRDKKVMVFFSSCNSVKYHHELLNYIDISVQCIHGKQKQQKRTCTFFS 362

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
               ++ + + TDVAARG+D+P ++ ++  +    P   +HR GRT R
Sbjct: 363 FCQAKSGILLCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTAR 410


>gi|297561743|ref|YP_003680717.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846191|gb|ADH68211.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 566

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 191/360 (53%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I E L+  G      +Q A +   +  +DVL   +TGSGKT+AFGL +   L+   
Sbjct: 43  LPQDIVEELARNGVTTPFPIQAATIPDAIEGRDVLGCGRTGSGKTLAFGLPV---LMRAA 99

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RERRDLQNGA 125
           +R + A+ P AL + PTRELA QV R+    YA+   V    + G S + R+  +L+ G 
Sbjct: 100 ERRAAANRPRALILVPTRELAHQV-RDALRTYARIVGVRVGDVVGGSSYTRQINELRRGV 158

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I     ++  ++  VLDEAD+M D+GF   +  +LD      + L+F
Sbjct: 159 EVLVATPGRLSDLIDQGACDLGDVEVSVLDEADQMCDMGFMPQVSELLDQVRPDGQTLLF 218

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  +    ++     Q + +++  + V   D++  +  I    G  
Sbjct: 219 SATLDGDVDKLVRKYMNEPRTHSVDPPVSQVAKMEHHLLKVLPRDKNTIVTQIAAREG-- 276

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  ++      ++ LA+      +L G  +Q  R+  L   R+GR +  +ATDVAA
Sbjct: 277 RTILFVRSKYRADTISEQLAQAGVPCASLHGGKTQSVRTRTLAKFREGRIQALVATDVAA 336

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  +++V++ +L +  ++ LHR GRT RAG  G+ V ++  N +R A RL  +A V
Sbjct: 337 RGIHVDGIDMVVNVDLPTGHKDYLHRGGRTARAGASGLVVSLVAPNQRRMARRLLSDAGV 396


>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 684

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 170/328 (51%), Gaps = 7/328 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY   T +Q   +   LR  D++  A+TGSGKT A+ + + + L   +          
Sbjct: 30  KKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINRLETHS-----TEGVR 84

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +L I PTRELA+Q  +    L   T +  ++ IGG  +  +  +L +G  I+V TPGRL 
Sbjct: 85  SLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGPDIIVATPGRLT 144

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             + G  ++++ ++ V  DEAD M + GF + +  I+   P  R++L+FSAT+   +   
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAEF 204

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTR 254
            KN  K    + + +E R   D+D     V   +++  ++ +L       +  +VFC+TR
Sbjct: 205 LKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKEGHLLYLLLDLIGDKEQTVVFCATR 264

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    +VL     +   + G+  QQER   L+  R     V + TDVAARG+D+P+L+
Sbjct: 265 HEVEYLNEVLKIFDIKTSMMFGKADQQEREINLKKFRKQETHVLLVTDVAARGVDIPELD 324

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
            VI+ +  + P+  +HR GR  RAGR G
Sbjct: 325 NVINYDFPATPKLYIHRCGRVARAGRMG 352


>gi|328772701|gb|EGF82739.1| hypothetical protein BATDEDRAFT_1910 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 490

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 200/375 (53%), Gaps = 35/375 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+ +G+  +T VQ + +   ++ +DV+V A TGSGKT+AF + +   LL    R    
Sbjct: 1   QALALQGFTQMTPVQASTVPLFMKHRDVVVEAVTGSGKTLAFVIPVLEMLL----RRYAD 56

Query: 73  SAPL------ALAIAPTRELAVQV--GRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQ 122
           + PL      A+ I+PTRELA Q+   +  +  +  T V ++  + IGG  V   R D+Q
Sbjct: 57  NRPLGKNDIGAIIISPTRELAKQIYNPQSTDNDFPATPVCISHMLLIGGNIV---REDVQ 113

Query: 123 ----NGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                GAHI++GTPGRL D ++ + + N   L+ +++DEAD +LD+GF   +  IL   P
Sbjct: 114 QFAATGAHILIGTPGRLDDLLKRQNIFNCKELEVLIMDEADRLLDMGFELALTSILRKIP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--------VLVALS 229
           K+RR  +FSAT++  +  L K   ++ V++ +  E     D + R          +V   
Sbjct: 174 KQRRTGLFSATMNEGLGQLVKAGLRNPVKIVVKVEATDGGDTNQRTPSSLSIGYAIVKQD 233

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSN 285
           ++ + ++ +L  H  K  IV+ ST A V  + K+ ++       Q  +L G+++ + R  
Sbjct: 234 EKLSQLLCLLEKHQDKKFIVYFSTCACVDYYHKLFSQIDNCPDLQFHSLHGKMNPKRREA 293

Query: 286 ALQMMRDG-RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             +   +   + V I TD+AARG+D+PD++ V+  +   +P+   HR GR  R GR+G +
Sbjct: 294 VYRKFTEAPMSSVLICTDIAARGLDIPDVDWVVQFDAPQDPKAFAHRCGRAARFGRQGSA 353

Query: 345 VFVIPQNMQRRAERL 359
           V  + Q+     E L
Sbjct: 354 VVFLSQHEDAYVEFL 368


>gi|311067228|ref|YP_003972151.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310867745|gb|ADP31220.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 376

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 190/360 (52%), Gaps = 12/360 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N    I E     G+   T+VQE      +  KDV+  + TG+GKT+A+ L +   + 
Sbjct: 8   LHNAKTFIKENWETSGFTKPTAVQEQTAELIMEGKDVIAESPTGTGKTLAYALPVLERIQ 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E           A+ +AP+REL +Q+ + ++   + + +  A  IGG +V ++   L+ 
Sbjct: 68  PEQKHAQ------AVILAPSRELVMQIFQVIQDWKSGSELRAASIIGGANVKKQVEKLKK 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VGTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ K R++L
Sbjct: 122 HPHIIVGTPGRVSELIKMKKLKMHEVKTIVLDEADQLILPEHRETMKQIIKTTLKDRQLL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+      + +   ++   + +         + ++ ++    D+   +  + R  G
Sbjct: 182 CFSATLKQETEQVLREMTQEPEVLKVERSQHDAGKVKHQYLVCDQRDKVKLLQKLSRLQG 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A+VF     ++S + + LA H   +  L  E  + ER+  L    +G   + +ATD+
Sbjct: 242 MQ-ALVFVRDIGNLSVYAEKLAYHHVDLGILHSEAKKMERAKILAAFENGEFPLLLATDI 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ---NMQRRAERL 359
           AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  +  V P     +++ A+RL
Sbjct: 301 AARGLDIENLPYVIHADI-PDEDGYIHRSGRTGRAGKEGTVISLVTPMEESKLKKMAKRL 359


>gi|254882074|ref|ZP_05254784.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640918|ref|ZP_07995627.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254834867|gb|EET15176.1| ATP-independent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387437|gb|EFV68307.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 439

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 174/332 (52%), Gaps = 20/332 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIA 81
           L  +QEA +N     KD+++ + TGSGKT+A+ L L  +L        P  +   A+ + 
Sbjct: 16  LNPMQEASINAWKEGKDLILLSPTGSGKTLAYLLPLVQSL-------KPGITGVQAIVLV 68

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIR 140
           P+RELA+Q+ +  + +   T      C GG     E R ++     +++GTPGR+ DH+ 
Sbjct: 69  PSRELALQIDQVFKSM--NTPFKAVSCYGGRPAMEEHRTIKGVQPSVIIGTPGRMNDHLS 126

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLA 197
            +  +   +  +V+DE D+ L+ GF++++  ++   P  +R  + SAT +   P  T L 
Sbjct: 127 KQNFDADTVTTLVIDEFDKCLEFGFQEEMATVIGQLPNLQRRFLLSATDAEEIPQFTGLD 186

Query: 198 KNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K      +++N  +   Q +  +    VL    D+   +  +L   G+++ +VFC+ R S
Sbjct: 187 K-----TIKLNFLNPEEQLTHRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNHRES 241

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  K L    FQ     G + Q +R  +L   R+G   V I+TD+AARG+D+P++E V
Sbjct: 242 VERVGKYLQSQKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPEIENV 301

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +H  L +N +  +HR+GRT R   +G S  ++
Sbjct: 302 VHYHLPANEDGYIHRNGRTARWEAEGNSYVIL 333


>gi|183396419|gb|ACC62099.1| ATP-dependent RNA helicase DDX18 (predicted) [Rhinolophus
           ferrumequinum]
          Length = 730

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 196/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  +F P 
Sbjct: 252 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAIELIVK-LKFMPR 309

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 310 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 369

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 370 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPIRRQTMLFSATQTR 429

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +  K  
Sbjct: 430 KVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 488

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G   Q +R+       +    + + TDVAARG
Sbjct: 489 MVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADTGILLCTDVAARG 548

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 549 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 595


>gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 411

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 199/387 (51%), Gaps = 4/387 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +AL + G+   T +QE ++   L   D++  AQTGSGK+ +F L +   L    
Sbjct: 8   LSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPILELL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D +   +    L + PTREL  Q+         +      V   IGG  +  +  ++Q G
Sbjct: 66  DSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLFNIQKG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V T GR  D +  K + +SH+   VLDEAD+MLD GF +++E IL++  +KR+ L+
Sbjct: 126 CDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEALGQKRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  +A    ++ + V++  E      +  RA+LV+  +R   + ++L+    
Sbjct: 186 FSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILVSRENRAPLLRHLLKSEKY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF S++ +         +H F   +  G+L Q++R+  L+  +  + ++  ATD+ 
Sbjct: 246 ELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILFATDLV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+ D+  VI+ +L  +  + +HR GRT RAG+ GM++  I    +     + + +N
Sbjct: 306 SRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFIDHEDEAHFRLIEKRSN 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL 391
           + +  E     E   E   +   ++P+
Sbjct: 366 IRLKREQIEGFELTTEAPKREKGKEPI 392


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 193/370 (52%), Gaps = 11/370 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+++   +   + 
Sbjct: 164 FQCYPEVM-ENIQKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSY--LMPGFIH 220

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++      + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL  
Sbjct: 221 LDSQPIEKRNGPGMLVLTPTRELALQVEAECS-KYSYKGLKSVCIYGGGDRNGQIQDLTK 279

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P  R+ 
Sbjct: 280 GVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQT 338

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + I   L  
Sbjct: 339 VMTSATWPYSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLES 398

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IA
Sbjct: 399 MSPKDKVIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILIA 458

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ ++ +N  R A  L 
Sbjct: 459 TDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLLTRNDWRVANELI 518

Query: 360 --FREANVSV 367
                AN S+
Sbjct: 519 NILERANQSI 528


>gi|325102945|ref|YP_004272599.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971793|gb|ADY50777.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 439

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 173/336 (51%), Gaps = 22/336 (6%)

Query: 46  TGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           TGSGKT+AF L L   L  + DR        A+ + P+RELA+Q+ +  + L  +TG+ V
Sbjct: 40  TGSGKTLAFLLPLFLRL--DVDR----KGVQAIVVVPSRELALQIEQVFKAL--QTGLKV 91

Query: 106 AVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
             C GG S   E   L N A  +++ TPGRL  HIR    ++S ++ + LDE D+ L+LG
Sbjct: 92  TCCYGGHSAKIEASSLLNDAPTLIIATPGRLAFHIREGNFDVSSVRNLALDEFDKSLELG 151

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           F ++I FI+D   K   M++ SAT    +     +  ++   ++               +
Sbjct: 152 FEEEITFIVDELFKVDGMILTSATQFEELPAFIAS--REFFTLSFLKNEEHKPSFTTEII 209

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                D+  A++ +L  +  ++ +VFC+ R +  R   +L +     V   G L QQER 
Sbjct: 210 QCKSKDKLRALLQLLCKYPNESTLVFCNFREATERVYDMLTDKGISAVVYHGGLDQQERE 269

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL   R+G + V + TD+A+RG+D+PD++ VIH +L  N E+ +HR+GRTGR   +G+ 
Sbjct: 270 KALMKFRNGTSSVIVNTDLASRGLDIPDVQHVIHYQLPLNEESFIHRNGRTGRMKAEGLV 329

Query: 345 VFVI------PQNMQRRAERLFREANVSVVWEPAPS 374
             ++      P+ +    E  F E  +     P PS
Sbjct: 330 HLLLSEEEYKPEYITDYTETDFEEKEL-----PLPS 360


>gi|38198643|ref|NP_938180.1| eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
 gi|29294689|gb|AAH48899.1| Eukaryotic translation initiation factor 4A, isoform 1A [Danio
           rerio]
          Length = 406

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 172/329 (52%), Gaps = 12/329 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E
Sbjct: 38  NLREALLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDVE 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NG 124
                   A  A+ +APTRELA Q+ + +  L    G     CIGG +V  + + LQ + 
Sbjct: 98  ------LKATQAMVLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRNDVQKLQADV 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+  ++K   LDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQKLATDTQVIL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRY 241
            SAT+   +  +   + +D VR+ +  E      I  R   + +   +   + + ++   
Sbjct: 212 LSATMPQEVLEVTTKFMRDPVRILVKKEELTLEGI--RQFYINVEKEEWKLDTLCDLYET 269

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I T
Sbjct: 270 LTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVLITT 329

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLH 330
           D+ ARGID+  + LVI+ +L +N EN +H
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|145612307|ref|XP_367108.2| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
 gi|145019494|gb|EDK03722.1| hypothetical protein MGG_07033 [Magnaporthe oryzae 70-15]
          Length = 645

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 156/276 (56%), Gaps = 5/276 (1%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P +L +APTREL  Q+  E      ++ V   V  GG  +  + R ++ G  ++V TPGR
Sbjct: 249 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 308

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKKRRMLMFSATIS 190
           L D I    +++ ++K +VLDEAD MLD+GF   I  I++     + + R+ LMFSAT  
Sbjct: 309 LVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVQDRQTLMFSATFP 368

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIV 249
             I  LA+++ KD + +++        +I  R + V    D+ + ++++L  HG    ++
Sbjct: 369 GYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLLSTHGGGLTLI 428

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +    +  L        ++ G+ +Q+ER  AL+M R GR  + +AT VAARG+D
Sbjct: 429 FVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGRCPILVATAVAARGLD 488

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 489 IPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 524


>gi|255534825|ref|YP_003095196.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341021|gb|ACU07134.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
          Length = 380

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 182/362 (50%), Gaps = 17/362 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G++    VQE  +   L  KD++  AQTGSGKT  F + +   L  +N+          L
Sbjct: 20  GFLKPFPVQEQTIPVILSGKDLMGVAQTGSGKTACFVMPILDKL--QNEDIKKDRNIQVL 77

Query: 79  AIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            +APTREL +Q+           K  +      GGVS++ + + +  G  ++V TPGRL 
Sbjct: 78  VLAPTRELVIQIDEVFRVFTENLKREIRTMAVYGGVSINPQMKGML-GVEVLVATPGRLL 136

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I  K L+IS +  +V+DEAD+M  LGF +++  +    P K++ ++FSAT++  +  +
Sbjct: 137 DLIDHKALSISQITHLVIDEADKMFQLGFEEEMNTLFAMMPPKKQTVLFSATLNDKVEEI 196

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +    + V V I  E      I   A  V    +   +  +++    K A+VF S+  S
Sbjct: 197 KQRLTIEPVLVEIKQEEVDIDQITQIAYHVTNESKGPFLRYLIKEQDIKQALVFASSTRS 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L ++     A+ G+ SQ  RS  LQ  ++G  ++ +ATD+  RGI +  LE+V
Sbjct: 257 ADHLAEKLNKNKIPATAIHGQKSQGSRSGNLQGFKEGETQILVATDLIGRGIHIDALEVV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVF-----------VIPQNMQRRAERLFREANV 365
           I+ EL  +P + +HR GRTGRA   G ++            VI + M +R E L R  ++
Sbjct: 317 INYELPRSPLDYIHRIGRTGRANGHGTAITLLTDDELQHFRVIQKKMGKRVE-LIRTGDI 375

Query: 366 SV 367
           ++
Sbjct: 376 NL 377


>gi|300772630|ref|ZP_07082500.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760933|gb|EFK57759.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 398

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 172/340 (50%), Gaps = 6/340 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +++ E L+       T +Q+A++   L+ KDVL  + TG+GKT AF L +   LL E
Sbjct: 7   NLSKLLIEKLNTFQIAEPTGIQKAVIPNILKGKDVLAISPTGTGKTEAFALPVLH-LLTE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           N +    S    L ++PTRELA Q    ++        +  + I GG S  ++  +L   
Sbjct: 66  NKQ----SEHKTLILSPTRELAQQTYLRIKNCTPSEVNINTISIFGGQSYEKQASELSTD 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D +  K +N+S  K VV+DEADEML LGF   +  I+   P  R+ L+
Sbjct: 122 PAIVVATPGRLLDLMDQKLINLSVFKKVVIDEADEMLKLGFIAALFRIMGHLPAGRQTLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L     +   R  + +   + S I    + V  +D+ N I  ++ ++  
Sbjct: 182 FSATFPKELEELVPKVLRQPFRFEVQNREAEQSQIHQYLLFVDKNDKKNLIKYLIDHYKI 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F  T   V R    L +H      L G+ SQ  R+  ++  ++      +ATD+A
Sbjct: 242 DAALIFTRTTHGVDRIVSDLQKHGLTAQGLYGDKSQAVRTAIVEDFKNRNFNFLVATDIA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +RG+ L DL+ VI+ E+    E  +HR GRT R  R G +
Sbjct: 302 SRGLHLDDLDHVINYEIPDTAEQYMHRIGRTARGTRDGYT 341


>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 430

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/351 (33%), Positives = 181/351 (51%), Gaps = 15/351 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+    +  
Sbjct: 14  DATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGQTGF 73

Query: 73  SAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             PLA L + PTRELA+QV   L  +    +      V  GGVS++ +   L+  A  +V
Sbjct: 74  VRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINPQMMQLRGSADFLV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L+FSAT 
Sbjct: 134 ATPGRLLDLVENNAVRLNTVQHLVLDEADRLLDQGFAEELNRVLALLPAKRQTLLFSATF 193

Query: 190 SPAITTLAKNYQKDAVRVNI-ASENRQHS----DIDYRAVLVALSDRDNAIVNILRYHGA 244
              +  LA     D VRV + A +  +HS    +I  RA+ V  S+R   ++  L   G 
Sbjct: 194 PQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVD-SNRRTQLLRQLVKQGE 252

Query: 245 -----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF + R +       L +         G++SQ  R   L   +  R ++ I
Sbjct: 253 NQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKEVLDQFKAKRWQLLI 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
            TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++ FV P
Sbjct: 313 TTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSP 363


>gi|327351047|gb|EGE79904.1| ATP-dependent RNA helicase DBP8 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 553

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 196/362 (54%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   ++ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 130 PWLVG-SLSVMAIKRPTAIQKACIPEIIKGRDCIGGSRTGSGKTVAF----AAPILQKWA 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 185 EDPF----GVFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 240

Query: 126 HIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           HIV+ TPGRL DHI   G +    ++  + VVLDEAD +L  G      D+E  L + P 
Sbjct: 241 HIVIATPGRLADHITSSGADTICGLNRTRVVVLDEADRLLASGPGSMLPDVETCLSALPP 300

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQ--HSDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  I++EN+      +    + V L+ 
Sbjct: 301 STSRQTLLFTATVTPEVRALKSMPRPANKPPIFVTEISTENQATIPPTLKQTYLQVPLTH 360

Query: 231 RDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  +L    +  K +I+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 361 REAFLHTLLSTEANAPKPSIIFCNRTKTADLLERMLRRLGHRVTSLHSLLPQSERTANLS 420

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++
Sbjct: 421 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 480

Query: 349 PQ 350
            Q
Sbjct: 481 GQ 482


>gi|124088187|ref|XP_001346998.1| RNA helicase [Paramecium tetraurelia strain d4-2]
 gi|145474579|ref|XP_001423312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057387|emb|CAH03371.1| RNA helicase, putative [Paramecium tetraurelia]
 gi|124390372|emb|CAK55914.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1157

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 178/347 (51%), Gaps = 6/347 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+   + ++ ++N   +Q   +   +  +D +  A+TGSGKT+A+ L L   +L +    
Sbjct: 514 VLNVLIEKKKFINPFPIQAQAVPCIMSGRDFIGIAETGSGKTLAYLLPLLRHVL-DQPAL 572

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P+A+ +APTRELA Q+     W  +   + V  C+GG  +  +  DL+ G  IVV
Sbjct: 573 KDGDGPIAIIMAPTRELAHQIYVNCRWFTSILNLNVVCCVGGAGIAGQLSDLKRGTEIVV 632

Query: 130 GTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            TPGR+ D +    GK  N+  +  VV+DEAD M DLGF   I  I+ +    R+++MFS
Sbjct: 633 CTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKIIQNIRPDRQLVMFS 692

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  LAK   +  +   +    +   +I+     +  SD+   ++ + +    K 
Sbjct: 693 ATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQIIEFMDESDKLYKLLLLFQEWYTKG 752

Query: 247 AI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +I +F   +       K L ++ ++   L G +  Q+R   +   + G   + +AT V A
Sbjct: 753 SILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDFKKGIRTIMVATSVLA 812

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           RG+D+  + LVI+    ++ E+ +HR GRTGRAG+KG ++ F  PQ+
Sbjct: 813 RGLDIKHICLVINFSCPNHMEDYIHRIGRTGRAGQKGTAITFFTPQD 859


>gi|82596351|ref|XP_726226.1| ATP-dependent RNA helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23481544|gb|EAA17791.1| putative ATP-dependent RNA helicase [Plasmodium yoelii yoelii]
          Length = 492

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 182/343 (53%), Gaps = 20/343 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  L   +  K+V+ S++TG+GKT+ +   +   L   N  F        L I PT
Sbjct: 95  TKIQKLCLPLIIEGKNVIGSSETGTGKTICYCWGMLQEL---NKNFY---GIFGLIILPT 148

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL  Q+  +      K G+ +  CIGG S+  +RR++ N  HIVVGTPGR+ D I    
Sbjct: 149 RELVFQIVEQFHLYGNKIGIKILSCIGGFSLIEQRRNILNKPHIVVGTPGRVSD-ILDDC 207

Query: 144 LNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSATISPAIT 194
           +++ +    L+ +VLDEAD +L   F D ++ IL + PK+     RR L FS+TI+ +I 
Sbjct: 208 IDVKNCFKRLRFLVLDEADLLLQKSFEDKLKIILSNIPKETFGEPRRTLFFSSTITDSIN 267

Query: 195 TLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NAIVFCS 252
            L K +  D  + V+   + +   ++D R + +    +   +V IL+      + I+F +
Sbjct: 268 LLNKTFPNDKLILVDANKKQKPLKNLDQRYIYIDSIAQITYLVYILKNKLIDMSGIIFTA 327

Query: 253 TRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
                     VL +   F V ++     Q++R ++L   ++G  ++ IATD+ +RGID+P
Sbjct: 328 NSYKCELIYNVLNSLGTFSVESIHSSKDQRKRMSSLLRFKNGFCKILIATDIISRGIDIP 387

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            +  VI+ +  +     +HR GRT RA RKG+S+ F+  +++Q
Sbjct: 388 KVAFVINFDFPNEIIQYIHRIGRTARANRKGLSISFIDKKDLQ 430


>gi|299145404|ref|ZP_07038472.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_23]
 gi|298515895|gb|EFI39776.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_23]
          Length = 444

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 20/371 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAAEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMEVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSASSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S ++I    ++    +  E
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTS-YLILHAEEKLPSYILEE 351

Query: 363 ANVSVVWEPAP 373
             + V+ E  P
Sbjct: 352 MEIVVLPENPP 362


>gi|158259929|dbj|BAF82142.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +R  I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRALITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|73621050|sp|Q4R8K5|IF4A1_MACFA RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|67968411|dbj|BAE00567.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F   A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195]
 gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 419

 Score =  166 bits (421), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 174/335 (51%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     L+    RF  A
Sbjct: 14  ESLNAMGHHSPTTIQQETIPSALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRF--A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+ R    L    G+ +A+  GGV    +   L     I+V TP
Sbjct: 72  GQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEALAGNVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++ ++FSAT+   
Sbjct: 132 GRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNMLFSATLEGG 191

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +   A+    D + +++ +   + + I     L    +   A++ ++LR    K  IVF
Sbjct: 192 GVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLLRQEDVKRTIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  VS     L +       + G++ Q++R  AL     G   V +ATDVAARGID+
Sbjct: 252 VKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 312 DDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 196/374 (52%), Gaps = 17/374 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LA 59
           F   P++I E++   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 191 FHPYPELI-ESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHLN 249

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  ++  +R  P      L + PTRELA+QV  E    Y+  G+      GG +  ++ R
Sbjct: 250 NQPISREERNGPG----MLVLTPTRELALQVEAECS-KYSYKGLKSICIFGGRNREQQIR 304

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPK 178
           D+  G  I++ TPGRL        +N+  +  +VLDEAD+MLDLGF   I + +LD  P 
Sbjct: 305 DITKGIDIIIATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRPD 364

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
            R+ +M SAT S  I  L ++Y K+ + V + + +    +   + V++   +   +++  
Sbjct: 365 -RQTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQE 423

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L+    ++  IVF   R      +  L+     V +L G+  Q +R  AL+  R G+ +
Sbjct: 424 FLQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVK 483

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G+S+ ++ QN  + A
Sbjct: 484 VLIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIA 543

Query: 357 ERL---FREANVSV 367
             L    + AN SV
Sbjct: 544 TELIKILKRANQSV 557


>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 197/365 (53%), Gaps = 26/365 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A +   L  +D+ V+AQTGSGKT AF L + + L+       PA
Sbjct: 21  KAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLIG------PA 74

Query: 73  SAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              ++   L + PTRELA Q  +E+E     T +   +  GG     +   L+    I++
Sbjct: 75  KVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPDILI 134

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ + +    L++  ++ +VLDEAD MLD+GF DD++ ++     +++ ++FSAT 
Sbjct: 135 GTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTMLFSAT- 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVL---VALSDRD---NAIVN-ILRY 241
                T     ++   +V    E+ Q +++ D  A     +  +D +     I+N +L  
Sbjct: 194 -----TGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLAN 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AIVF +TRA+  R    L    ++   L GE  Q++R  A+  ++ G  ++ +AT
Sbjct: 249 ETYQKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358
           DVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +I     N+    ER
Sbjct: 309 DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER 368

Query: 359 LFREA 363
             +++
Sbjct: 369 YLKQS 373


>gi|218190067|gb|EEC72494.1| hypothetical protein OsI_05864 [Oryza sativa Indica Group]
          Length = 513

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/319 (33%), Positives = 162/319 (50%), Gaps = 9/319 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 189 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 248

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 249 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 308

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 309 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 368

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 369 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 428

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 429 LQ-KTPPPVLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 487

Query: 299 IATDVAARGIDLPDLELVI 317
           +ATDVA++G+D+PD++ VI
Sbjct: 488 VATDVASKGLDIPDIQHVI 506


>gi|84996425|ref|XP_952934.1| DEAD-family helicase [Theileria annulata strain Ankara]
 gi|65303931|emb|CAI76310.1| DEAD-family helicase, putative [Theileria annulata]
          Length = 757

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 180/365 (49%), Gaps = 27/365 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+ + GY+  T +Q   +   L  +D++  A TGSGKT AF L + + +  L 
Sbjct: 346 LPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTYVKKLP 405

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +AP+RELA+Q+  E     A         +GG +   +  +L+ G
Sbjct: 406 PLDDETSLDGPYALILAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAESQAFELRKG 465

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             I++GTPGR+ D +      +S    V+LDEAD M+D+GF D +++ILD  P       
Sbjct: 466 CEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNLKDR 525

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R   MFSAT+ PA+  L K Y +    ++I       + I 
Sbjct: 526 DESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKTSIT 585

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +   V  S +   +   L        I+F + + +    TK + +  ++ V+L G  +Q
Sbjct: 586 QQLDFVQESKKTRHLEETLETLEPP-IIIFVNLKKNTDVITKHITKIGYRAVSLHGGKTQ 644

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R +AL   + G   + +ATDV  RG+D+  +++VI+ ++  + +   HR GRTGRAG 
Sbjct: 645 ESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMPKDIQTYTHRIGRTGRAGL 704

Query: 341 KGMSV 345
           KG+S+
Sbjct: 705 KGLSI 709


>gi|47216597|emb|CAG00632.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 539

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 191/368 (51%), Gaps = 20/368 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P  +   L + GY   T VQ  ++   L  +DV+ SA TGSGKT+AF L + + 
Sbjct: 128 FEHCGFPATLSSNLKKAGYEAPTPVQMQMVPVGLTGRDVIASADTGSGKTIAFLLPVVTR 187

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
            L         + P+AL + PTRELA+Q+ R+  E +     +  A+ +GG+ +  +   
Sbjct: 188 ALKS------TAGPVALILTPTRELAIQIERQAKEVVMGLPNMRTALLVGGMPLPPQLHR 241

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++ TPGRL + ++ K + +  +K VV+DE D ML +GF+  +  +L+  P++R
Sbjct: 242 LKQIIKIIIATPGRLLEILKQKAVQLDKVKVVVIDEVDTMLKMGFQQQVLEVLEQVPEER 301

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+ SATI      LA    +D VR+ I  +N+   ++    + V    +   + +IL 
Sbjct: 302 QTLLVSATIPAGTEELAARLVRDPVRIVIGEKNQPCVNVRQILLWVEEPSKKRKLFDILN 361

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
               Y      +VF   +       + +A+    + VA+  + SQ+ER+  L+ + DG  
Sbjct: 362 DSKLYQPP--VVVFVDCKLGADLLCEAVAKVTDLKTVAIHSDKSQRERNRILRGLLDGEF 419

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V I+T V  RG+DL ++ LV++ ++ +  +  +H+ GR GR G +G ++  +  N    
Sbjct: 420 EVVISTGVLGRGLDLVNVRLVVNFDMPNTMDEYVHQVGRAGRLGHRGTAITFLNNN---- 475

Query: 356 AERLFREA 363
            +RLF E 
Sbjct: 476 NKRLFLEV 483


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/352 (32%), Positives = 180/352 (51%), Gaps = 14/352 (3%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNP-DLREKDVLVSAQTGSGKTVAFGLA 57
           +FE    N P  I + L   G     ++ ++I  P  +  +D++  A+TGSGKT+AF L 
Sbjct: 111 VFEFTEANFPAPITDLLY--GSFQKPTIIQSISWPIAMSGRDIVSIAKTGSGKTLAFILP 168

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
            A    A     S    P  L + PTRELA QV +++   Y K  G  +    GG     
Sbjct: 169 -AIVHTANQQARSHREGPSVLVLLPTRELAQQV-QDVAKDYCKVMGQSLTCLFGGAPKSG 226

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G  +++ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+   
Sbjct: 227 QARDLERGVDVIIATPGRLMDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQI 286

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAI 235
              R+ LMFSAT    +  LA ++Q DA  +N+ S E   + +I     ++  S +   +
Sbjct: 287 RPDRQTLMFSATWPKDVRKLAMDFQTDAAHLNVGSLELAANHNITQIVEVLEESSKQQRL 346

Query: 236 VNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++IL           I+F  T+      T+ +    +  + + G+  Q ER  AL   + 
Sbjct: 347 ISILSDIMSEPECKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALGEFKA 406

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           G+  + +ATDVAARG+D+ D++ VI+ + S+N E+ +HR GRTGR  ++G +
Sbjct: 407 GKTPILLATDVAARGLDVDDIKYVINYDYSNNSEDYVHRIGRTGRCEKRGTA 458


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 193/366 (52%), Gaps = 10/366 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q       L  +D++  A+TGSGKT+AF + +   ++ + +  S    P+A+ I+PT
Sbjct: 207 TAIQAQTFPVALSGRDMIGIAKTGSGKTLAFTIPMIWHVMDQRE-LSKGEGPIAIVISPT 265

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+  +++      G       GGV    + + L+ GA +++ TPGRL + IR K 
Sbjct: 266 RELAHQIYTQVKMFTKLYGAECVAVYGGVGKWEQVQALRKGAEVLIATPGRLIELIRKKT 325

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +  + +  VVLDEAD M +LGF   +  +L      R+ L+FSAT  P I  LA+    +
Sbjct: 326 IKTNRVTFVVLDEADRMFELGFESQLRSMLGQLRPDRQSLLFSATFRPRIEQLARAILHN 385

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            ++V +    + +  I    V++    +  +  + N+ R       ++F +++      +
Sbjct: 386 PIKVTVGKAGQANEVISQIPVVLLNHGKKWEWLMKNLERIVDQGRVLIFANSKVGCEELS 445

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K L    ++   L G+ SQ +RS+AL   ++G+  V +ATDVA+RG+D+ D++ V++ ++
Sbjct: 446 KNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCPVMVATDVASRGLDIRDVKTVVNYDV 505

Query: 322 SSNPENLLHRSGRTGRAG----RKGMSVFVIPQNMQRRAERLFREANVSVVWEP-APSVE 376
           + N +  +HR GRTGR G      G++  +I     + A +L    N+    +P +  + 
Sbjct: 506 AKNIDIHVHRIGRTGRMGVDGFEPGVAYTLITNKETQFAAQLV--CNMDTAGQPVSAELL 563

Query: 377 AIRERD 382
           AI ERD
Sbjct: 564 AIAERD 569


>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
 gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
          Length = 761

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 198/387 (51%), Gaps = 19/387 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 247

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P  A +   L + PTREL +QV    + L     +   + +GG+ V  +   L+ 
Sbjct: 248 ---YKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 304

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 305 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 364

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNAI 235
           ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   + +      DR+  +
Sbjct: 365 MLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFIRIRPNREGDREAIV 420

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D + 
Sbjct: 421 AALLMRTFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 480

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++ 
Sbjct: 481 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKM 540

Query: 356 AERLFREANVSVVWEPAPSVEAIRERD 382
            + + + A   V     P    ++ RD
Sbjct: 541 LKEIVKAAKAPVKARILPQDVILKFRD 567


>gi|328767710|gb|EGF77759.1| hypothetical protein BATDEDRAFT_2048 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 384

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 119/357 (33%), Positives = 196/357 (54%), Gaps = 22/357 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS--PASAPLA 77
           Y N+++VQE +L+    + D+LV A+TG+GKT+AF +A   ++++   RF   P   P+ 
Sbjct: 28  YKNMSTVQERVLSLLPTDADLLVRAKTGTGKTLAFLIAAVESVIS---RFKSRPPGVPI- 83

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
           L ++PTRELA+Q+ RE E L +     VA  +GG S  +  R++ Q    I+V TPGRL 
Sbjct: 84  LILSPTRELALQIAREAESLVSPRRWRVASAVGGESRGKNIREITQFNCDILVATPGRLN 143

Query: 137 DHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           D +  +      +  LK +V DEAD +LD+GF  +I+ I  + PK+R+  MFSATIS  +
Sbjct: 144 DLLNNEPAVRKQLQGLKMLVYDEADILLDMGFTKEIQDINFNLPKERQTYMFSATISKEV 203

Query: 194 TTLAKN-YQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-----GAK 245
            ++A    + D V ++   ++EN  H  I    V+   S     + +++  H      +K
Sbjct: 204 RSIASTTLRPDHVFIDTVPSNENDTHLKIKQTHVVGPHSQTLALLHDVITKHRESTLNSK 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + F +T+ +   F+  +  +L    V+ +  +L+QQ+RS      R  ++ +   TDV
Sbjct: 264 ILVFFNTTKTT--NFSTDVFNNLDGMDVLQIHSKLTQQQRSRVADRYRRAQSAILFTTDV 321

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +ARG+D P + LVI      + E  +HR GRTGRAG+ G S  ++    +   ++LF
Sbjct: 322 SARGVDYPGITLVIQVGPPPSREQYIHRIGRTGRAGKSGESTLILSTYDKHFLDQLF 378


>gi|255535009|ref|YP_003095380.1| putative ATP-independent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341205|gb|ACU07318.1| putative ATP-independent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
          Length = 435

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 167/317 (52%), Gaps = 16/317 (5%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           KD+++ + TGSGKT+AF   +   L          +   A+ + P RELA+Q+ +  + +
Sbjct: 30  KDIILLSPTGSGKTLAFLFPVLRNLKRN------VTGIQAMILVPARELALQIEQVFKSM 83

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T   V+VC GG     E  +L     +++GTPGR+  H++    + S +  +VLDE 
Sbjct: 84  --GTDFKVSVCYGGHDKKIEINNLTQAPALIIGTPGRIAYHLQHNNFDPSSITTLVLDEF 141

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENR 214
           D+ L+ GF++D++FI+ S  +  + ++ SAT     P  T L     KD   +N    + 
Sbjct: 142 DKSLEFGFQEDMDFIIGSMEQLSQRILTSATAMQEIPKFTGL-----KDYKEINFLKVHE 196

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
              D+  R V+    ++ + +  ++   G K  ++FC+ R +V R +++L E        
Sbjct: 197 SKPDVQLRKVISTSEEKLDTLFRLICKIGNKRTLIFCNHRDAVDRISELLREKGIDRETF 256

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G + Q ER  AL   R+  AR+ I TD+A+RG+D+P++E ++H +L    +  +HR+GR
Sbjct: 257 HGGMEQDERERALLKFRNDSARILITTDLASRGLDIPEVESIVHYQLPPKEDAFIHRNGR 316

Query: 335 TGRAGRKGMSVFVIPQN 351
           T R   KG S  ++ ++
Sbjct: 317 TARMNAKGYSYLIMTED 333


>gi|124506289|ref|XP_001351742.1| snrnp protein, putative [Plasmodium falciparum 3D7]
 gi|23504671|emb|CAD51549.1| snrnp protein, putative [Plasmodium falciparum 3D7]
          Length = 1123

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 180/372 (48%), Gaps = 27/372 (7%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  L
Sbjct: 704  NLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL 763

Query: 64   AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+ 
Sbjct: 764  PPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRR 823

Query: 124  GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
            G  IV+GTPGRL D +      ++    V+LDEAD M+D+GF D + +ILD  P      
Sbjct: 824  GVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLKS 883

Query: 180  --------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                                R   MFSAT+ P++  L++ Y +    ++I         I
Sbjct: 884  EDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSI 943

Query: 220  DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            + +   +    +   +  IL  +     IVF + +      +K + +  ++ VAL G  +
Sbjct: 944  EQKLEFLTEGKKKQKLQEILEMYEPP-IIVFVNQKKVADIISKSITKMKYKAVALHGGKA 1002

Query: 280  QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
            Q+ R   L   ++    + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRTGRAG
Sbjct: 1003 QEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAG 1062

Query: 340  RKGMSVFVIPQN 351
             KG+++  I ++
Sbjct: 1063 MKGLAISFITEH 1074


>gi|328768074|gb|EGF78121.1| hypothetical protein BATDEDRAFT_33571 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 404

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/346 (33%), Positives = 184/346 (53%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P LR+ DV+  AQ+G+GKT  F +++   +  E  R   A     L
Sbjct: 50  GFETPSIIQQRAILPVLRKHDVIAQAQSGTGKTATFSISILQNI-DETVRECQA-----L 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L     +    CIGG +V  +   LQ G H+VVGTPGR+ D 
Sbjct: 104 VLAPTRELAQQIQKVILALGDFLQIECHACIGGTNVREDMDKLQAGPHVVVGTPGRVFDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L  + +K  VLDEADEML  GF++ I  +      + ++++ SAT+   +  + K
Sbjct: 164 INRGALRANKIKMFVLDEADEMLSRGFKEQIYNVFQLLSSEIQVVLLSATMPADVLEVTK 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++  D  R+ +  +      I    + V   + +   + ++        A++FC+T+  V
Sbjct: 224 SFMVDPKRILVKRDELTLEGIKQFYIAVEKEEWKFETLCDLYETVTVTQAVIFCNTKRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F V AL GE+ Q+ER   +   R G +R+ I TD+ ARGID+  + LVI
Sbjct: 284 DWLTEHMRARDFTVSALHGEMEQKERQTIMGEFRSGSSRILITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++  +    Q MQR  E  +
Sbjct: 344 NYDLPTNRENYIHRIGRGGRFGRKGVAINFMTTEDQAMQRDIETFY 389


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 180/353 (50%), Gaps = 16/353 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           ++P+ + + + +  Y   T VQ+    I+N D   +D++  AQTGSGKT AF L +   +
Sbjct: 244 DLPETVRQNIRKANYKKPTPVQKYSIPIVNSD---RDLMACAQTGSGKTAAFLLPVLRGM 300

Query: 63  LAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +     ND FS    P A+ + PTREL  Q+  E       T +   V  GG SV  +  
Sbjct: 301 VKNGITNDMFSEKQLPQAVVVGPTRELVYQIFLETRKFSKNTIIKPIVAYGGTSVAHQLS 360

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--P 177
            L  G +I++ TPGRL D I    + +++L+ ++LDEAD MLD+GF  +I  ++ +   P
Sbjct: 361 QLSRGCNILIATPGRLLDFINRGKVGLANLQYLILDEADRMLDMGFEPEIRRLVAAPDIP 420

Query: 178 KK--RRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            K  R  LMFSAT    I  LA  + + D + + +       SD+    + V  +D+   
Sbjct: 421 DKYNRHTLMFSATFPNNIQELAHEFLRDDFLFLTVGRVGGACSDVTQTVLQVDTNDKREK 480

Query: 235 IVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++ ++          +VF  T+ +       L++      ++ G+  Q+ER  AL   + 
Sbjct: 481 LMQLIADVEETKARTLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQALYDFKS 540

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G   + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G + 
Sbjct: 541 GVCPILIATSVAARGLDIPKVEHVINFDLPSEIDEYVHRIGRTGRCGNLGQAT 593


>gi|15601743|ref|NP_233374.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821094|ref|ZP_01973761.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254850153|ref|ZP_05239503.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|9658432|gb|AAF96886.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521468|gb|EAZ78691.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|254845858|gb|EET24272.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
          Length = 428

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +       L G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 317 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362


>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 399

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 187/338 (55%), Gaps = 8/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRF 69
           I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  IVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEMLSKGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
               A   + + PTRELA+QV + +   YAK   + ++ + GGVS   ++  L  G  I+
Sbjct: 72  KRIRA---VILTPTRELAIQVEQNITK-YAKFLNLTSLAMYGGVSYQHQKDRLIEGVDIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FSAT
Sbjct: 128 VATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNA 247
           +S  +  LAK+   +A  ++IA  +   ++I+   V V   DR +A+++ +   G    A
Sbjct: 188 LSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTVD-KDRKSALLSHMITDGEWDQA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+   ++    L +   +  A     SQ  R   L   + GR +  +AT VAARG
Sbjct: 247 LIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYLVATGVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+ +L  V++ ++    ++ +HR GRTGRA   G ++
Sbjct: 307 IDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAI 344


>gi|327348721|gb|EGE77578.1| ATP-dependent RNA helicase HAS1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 639

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 199/366 (54%), Gaps = 17/366 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A   RF P 
Sbjct: 173 KAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL--RFKPR 230

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I+PTRELA+Q   V REL   +++T     + IGG +   E   L  G ++++
Sbjct: 231 NGTGVIVISPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLVKGVNLLI 287

Query: 130 GTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSA 187
            TPGRL DH+R   G    +LKA+V+DEAD +L++GF D++  I+   P + R+ ++FSA
Sbjct: 288 ATPGRLLDHLRDTPGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTMLFSA 347

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHG 243
           T +  +  LA+ + ++  + +N+    ++HS ++       + D D     + + L+ + 
Sbjct: 348 TQTTKVEDLARISLRQGPLYINV-DHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLKRNL 406

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +      I TDV
Sbjct: 407 KKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGTLICTDV 466

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +    +  +E
Sbjct: 467 AARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVGFLKHLKE 525

Query: 363 ANVSVV 368
           A V VV
Sbjct: 526 ARVPVV 531


>gi|256089106|ref|XP_002580657.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238666256|emb|CAZ36896.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 392

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 169/315 (53%), Gaps = 11/315 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +   ++         AL
Sbjct: 38  GYEKPSAIQQRAIKPSIEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQ------AL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+   ++ + +   V    CIGG    ++   LQ G H+VVGTPGR+ D 
Sbjct: 92  VLVPTRELARQIQTVVQRIGSYLCVKCYTCIGGTRTSQDMACLQQGQHVVVGTPGRVFDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  +++K  VLDEAD+MLD GF   I+ I    P+  ++++ SAT+  +I ++A+
Sbjct: 152 MNRNTLATANIKIFVLDEADQMLDRGFEPQIKEIYRFLPETAQIMLLSATMPKSILSIAR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRA 255
           +   D V++ I  E      I  +   + +S  D  +  ++  +G  N    ++F ++  
Sbjct: 212 SIMHDPVQILIKKEELTLDGI--KQFYINVSKEDYKLETLMDLYGIMNLSQVVIFVNSVN 269

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
             +     L    FQV  +  ++ Q++R   ++  R GR+R+ ++TD+ ARGID+  + L
Sbjct: 270 KSTHICNELKLKKFQVSCIHSDMDQEKRDAVMEEFRSGRSRILLSTDILARGIDVQQVSL 329

Query: 316 VIHAELSSNPENLLH 330
           V++ +L SN E  +H
Sbjct: 330 VVNYDLPSNRETYIH 344


>gi|229510271|ref|ZP_04399751.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517598|ref|ZP_04407043.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605408|ref|YP_002876112.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|229345634|gb|EEO10607.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352716|gb|EEO17656.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229371894|gb|ACQ62316.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
          Length = 416

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 22  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 70  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 126 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 185 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +       L G+ SQ ER  AL   ++G  +V IATD
Sbjct: 245 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 305 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 350


>gi|157135582|ref|XP_001656675.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870174|gb|EAT34399.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 347

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 161/293 (54%), Gaps = 7/293 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +A+    L + D  +  +   AL
Sbjct: 50  GFEKPSAIQQRAIMPCIKGHDVIAQAQSGTGKTATFSIAI----LQQID--TSIAECQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    G     CIGG +V  + R L+ G HIVVGTPGR+ D 
Sbjct: 104 ILAPTRELATQIQKVVIALGDYLGAQCHACIGGTNVRDDMRKLEMGCHIVVGTPGRVHDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L  SH+K  VLDEADEML  GF+D I+ +    P   ++++ SAT+   +  ++ 
Sbjct: 164 ISRNVLRPSHIKLFVLDEADEMLSRGFKDQIQDVFRMLPNDVQVILLSATMPAEVLEVST 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           ++ +D +++ +  E      I    + V   + +   ++++        A++FC+TR  V
Sbjct: 224 HFMRDPIKILVKKEELTLEGIKQFYIDVKQENWKLGTLIDLYDTLSITQAVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + T  +    F V ++ G++ Q++R   ++  R G +RV I TD+ ARGID+
Sbjct: 284 DQLTADMTSQSFTVSSMHGDMDQRDRDLIMKQFRTGSSRVLITTDLLARGIDV 336


>gi|73967848|ref|XP_537810.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
           isoform 1 [Canis familiaris]
          Length = 710

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 190/394 (48%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 112 PHLISTINTVLNMTSMTSVQKQSIPALLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKP 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 172 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 231

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRM 182
           I++ TPGRL DHI+  K ++   ++ ++LDEAD +LDLGF  DI  I   L++  +KR+ 
Sbjct: 232 ILISTPGRLVDHIKSTKNIHFCRIRWLILDEADRILDLGFEKDITVILNALNAECQKRQN 291

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----LVALSDRDN---- 233
           ++ SAT++  +T LA       VR+++  E+   SD+  RAV     L A  + D+    
Sbjct: 292 VLLSATLTEGVTWLAGISLLSPVRISVLDEHHGQSDLKGRAVPEASPLPACGELDSFAIP 351

Query: 234 ---------------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
                                 I+   ++   +  +VF S+   V     +  + L    
Sbjct: 352 ESLDQHVTLVPSKLRLVTLAAFILQKCKFEKDQKMLVFFSSCELVEFHYHLFLQTLPSCS 411

Query: 269 --------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                          + + L G ++Q+ER+   Q        + + TDVAARG+DLP + 
Sbjct: 412 GTLASGRPPSASTQLKFLRLHGNMAQEERTAVFQEFSHCETGILLCTDVAARGLDLPQVT 471

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     S+P   +HR GRT R G  G S+ ++
Sbjct: 472 WIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLIL 505


>gi|302308874|ref|NP_985999.3| AFR452Cp [Ashbya gossypii ATCC 10895]
 gi|299790837|gb|AAS53823.3| AFR452Cp [Ashbya gossypii ATCC 10895]
          Length = 559

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 184/347 (53%), Gaps = 8/347 (2%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           +P  +   + ER G+   T +Q   +   L  +D +  A TGSGKT+AF L + + L  L
Sbjct: 163 MPAELVRIVQERLGFGEPTPIQRVTIPNALHGRDYVGVAATGSGKTLAFLLPIFAKLGRL 222

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL 121
           A  +  +    P AL +APTRELA Q+  +      + +    VA  +GG S       L
Sbjct: 223 APLNAVTRQDGPRALVLAPTRELAQQIEAQARQFLSHWQRPCPVASIVGGHSFEEIALSL 282

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKK 179
           Q G  ++V TPGRL D +    L +  +  +VLDEAD M+D+GF + +  +L       +
Sbjct: 283 QGGCEVLVATPGRLLDCLEHHMLVLRQVATLVLDEADRMVDMGFEEQLTDVLARIDVLAE 342

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++LMF+AT++  I  +A  Y K+AV   +   + +         + A   R   +   +
Sbjct: 343 RQVLMFTATMTHTIEKIANGYLKNAVYATVGGADAEPQIRQLVEYVPAEEQRFTKLTREV 402

Query: 240 RYHGAKNAIVFCSTRASVSRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             + A   I+F + +A+ +  + K   E  F+   L G  SQ++R ++L+ +R G+  + 
Sbjct: 403 LPNFAPPIIIFINYKATANWLSEKFERETRFRTTVLHGSRSQEQREHSLRQLRSGKVDIM 462

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           IAT+VA RGID+P++ LV++ ++    E+ +HR GRTGRAG+ G ++
Sbjct: 463 IATNVAGRGIDIPNVSLVVNFQMPFQLEDYVHRIGRTGRAGQSGTAL 509


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 191/368 (51%), Gaps = 10/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ     + +  Y   T +Q   L   +  KD++  A+TGSGKT+AF L +   ++++ 
Sbjct: 222 LPQQFMSVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLPMFRQIISQP 281

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
           D  S    P+ + + PTRELA+Q+ +E +  + K+  +  +C+ GG S+ ++  D++   
Sbjct: 282 DPES-GEGPIGVILTPTRELALQIFKECKP-FMKSLNLKGICVYGGASISQQISDIKKRV 339

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           H  V TPGRL D +    G+  N+S    +VLDEAD M D+GF   +  I+ ++   R+ 
Sbjct: 340 HFAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRPDRQT 399

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT  P +  LAK    + + V +  ++     I  +  ++   +R + ++ +L   
Sbjct: 400 LVFSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLELLGTF 459

Query: 243 GAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +K+     +VF   + S       L +  +   +L G   Q +R   +Q  + G + + 
Sbjct: 460 KSKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGNSDIL 519

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT VAARG+D+  L LVI+ +  ++ E+ +HR GRTGRAG  G +V  +     R A  
Sbjct: 520 VATSVAARGLDVKRLNLVINYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTAKDYRAAYD 579

Query: 359 LFREANVS 366
           + R   VS
Sbjct: 580 VSRALKVS 587


>gi|188590398|ref|YP_001920680.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500679|gb|ACD53815.1| ATP-dependent RNA helicase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 382

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 191/361 (52%), Gaps = 12/361 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL ++     T +Q  ++N  L  KD++  + TGSGKT+A+ L +   +  E
Sbjct: 9   NLSSDIISALEKQNITVPTEIQSLVINEALENKDIMGESFTGSGKTLAYLLPIFERINTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
                      A+ +APT EL +Q+  +++ L   +G+ V     IG V+++ + + L+ 
Sbjct: 69  TKDIQ------AIILAPTHELVMQIEAQIKLLSDNSGINVKSLGIIGDVNINNQIKKLKE 122

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD      ++ I+ ++ + R++
Sbjct: 123 VKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIVKDIIKTTMRDRQL 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSA+I+P I    K   KD + V    ++  + +I +  V     D+   +  I+   
Sbjct: 183 MAFSASITPEIVDSLKELMKDPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++F +    +   +  L  H  +  A+SG +S++ER NA+   + G+ ++ +++D
Sbjct: 243 DPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILVSSD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V+ARG+D+ D+  V + +L    +  LHRSGRT R   KG S+ ++     N+ ++ E+ 
Sbjct: 303 VSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKYEKA 362

Query: 360 F 360
           F
Sbjct: 363 F 363


>gi|121726416|ref|ZP_01679690.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|153818171|ref|ZP_01970838.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227812555|ref|YP_002812565.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|298499762|ref|ZP_07009568.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|121631164|gb|EAX63539.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae V52]
 gi|126511277|gb|EAZ73871.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae NCTC
           8457]
 gi|227011697|gb|ACP07908.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|297541743|gb|EFH77794.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 428

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 34  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 81

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 82  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 138 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 196

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 197 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 256

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +       L G+ SQ ER  AL   ++G  +V IATD
Sbjct: 257 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 316

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 317 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 362


>gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 450

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 181/350 (51%), Gaps = 10/350 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ N T +QE   +     KDV+  AQTG+GKT A+ + +   L     +FS   
Sbjct: 15  AIEDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMMPILRDL-----KFSKQK 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL VQV  E+E L       V    GG +++ +++ +  G  I+V TPG
Sbjct: 70  HPRVLVLVPTRELVVQVVDEIEKLSKYINTRVLGVYGGTNINTQKQAILQGQDIIVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L +  ++ +V+DE D MLDLGFR  +  I D  P++R+ ++FSAT++  +
Sbjct: 130 RLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFDILPERRQNVLFSATMTEDV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNAI-VFC 251
             L  ++ K+  +++IA      ++I+  +  V     + N + ++L      N + +F 
Sbjct: 190 DELIYDFFKNPEKISIAVSGTPLNNIEQISYNVPNFFTKVNLLNHLLSDKETYNKVLIFV 249

Query: 252 STRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
             + +     K L E +F  +   +    +Q  R  +++   +G  R+ +ATDV ARG+D
Sbjct: 250 GFKRTADYLFKHL-EEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNRILVATDVMARGLD 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
             ++  VI+ +    PEN +HR GRTGRA + G ++ +     Q   E +
Sbjct: 309 FDNVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILLSTAKEQEAKEEI 358


>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 843

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/354 (33%), Positives = 179/354 (50%), Gaps = 27/354 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL++      T +QE  +   L  KD+  SAQTGSGKT AF L +   L     R +
Sbjct: 227 ILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPILERLQLRTRRIA 286

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A   + I P RELA Q    L  L   T +  A+ +GG+ +  +  +L+    I+V 
Sbjct: 287 ---ATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQELELRTCPDIIVC 343

Query: 131 TPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+ DH+R    +++  L+ +VLDEAD +L+LGF ++I+ I+   P+ R+ ++FSAT+
Sbjct: 344 TPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCPRARQTMLFSATM 403

Query: 190 SPAITTLAKNYQKDAVRV----------NIASEN---RQHSDIDYRAVLVALSDRDNAIV 236
           +  I  L     K  VR+          ++  E    R + + D  A+L+AL  R     
Sbjct: 404 TSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAILLALCTR----- 458

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   +  IVF  T+    R   +      +   L G L+QQER +AL+  R G   
Sbjct: 459 -----AFTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGAVD 513

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + + TDVAARGID+  +  VI+ E+  +    +HR GRT RAG+ G +V +  +
Sbjct: 514 ILLCTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSE 567


>gi|295084402|emb|CBK65925.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 444

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 20/371 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAEEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSSSSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S ++I    ++    +  E
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTS-YLILHTEEKLPSYIPEE 351

Query: 363 ANVSVVWEPAP 373
             + V+ E  P
Sbjct: 352 MEIVVLPENPP 362


>gi|289422183|ref|ZP_06424040.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
 gi|289157409|gb|EFD06017.1| DEAD/DEAH box helicase [Peptostreptococcus anaerobius 653-L]
          Length = 366

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 179/355 (50%), Gaps = 15/355 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +AL++ G    T VQ   +   + ++D+++ + TG+GKT++F L L   +L +
Sbjct: 7   NIDENLVQALAKIGIKEPTRVQLESIPLIIDKRDLMIKSNTGTGKTLSFLLPLIDKILKK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-------VVVAVCIGGVSVHRER 118
           +           L +APTREL +Q+      + +  G       V +    GG  +  + 
Sbjct: 67  D-------IDSILILAPTRELVLQINDMAVDIISHIGDENIKNTVNILPIYGGKDIKAQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+N  +I+V TPGRL DHI    +++S   ++V+DEAD+ML +GF+++I+ I     K
Sbjct: 120 NKLKNSINILVATPGRLLDHINRNTISVSKFDSIVIDEADQMLLMGFKNEIDLIFSKIKK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
               +  SAT+   +  L   Y  + + VNI  +      I+   V      +     + 
Sbjct: 180 YDHTIFLSATLDSKVKKLVYRYSNNPIEVNIEEDTHVPDLIEQEFVFTNDRQKFEDFCSK 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + +     AIVFC T+A V    + L +  +    +  ++SQ +R   ++  RD + +  
Sbjct: 240 IDHDQPFMAIVFCRTKARVDNLEEKLGQRKYNCKKIHSDISQAKRERIMKDFRDLKIQFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           I+TD++ARGID+  +  + + +    PE+ +HR GR GR G+ G S  FV  +NM
Sbjct: 300 ISTDLSARGIDVNGISHIYNYDFPERPEDYIHRIGRAGRIGKDGKSCSFVTEKNM 354


>gi|229505875|ref|ZP_04395384.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229356226|gb|EEO21144.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
          Length = 416

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 22  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 69

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 70  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 126 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 185 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +       L G+ SQ ER  AL   ++G  +V IATD
Sbjct: 245 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 305 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 350


>gi|301112795|ref|XP_002998168.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262112462|gb|EEY70514.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 823

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 198/405 (48%), Gaps = 68/405 (16%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-------ALA 59
           +P  + +A+ + G+   + +Q   +   L+++D++  A+TGSGKT AF +       +L 
Sbjct: 366 LPDAVYKAIKDLGFERPSPIQMQAIPIGLQKRDIIGIAETGSGKTAAFVIPIIAYIYSLP 425

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA---------VCIG 110
           +T++A     +    PLAL +APTRELA+Q+ +E   L   T V +            +G
Sbjct: 426 ATMVAR----TGEQGPLALVMAPTRELALQIEQEAIKLCKHTSVGLPEKMNPIKTLSVVG 481

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G S+  +   L+ G  I++GTPGRL D +    L ++    VVLDEAD M+D+GF   + 
Sbjct: 482 GQSIEDQGFRLREGVEIIIGTPGRLMDCLESHYLVLNQCNYVVLDEADRMIDMGFEPQVV 541

Query: 171 FILDS----------------------------SPKKRRMLMFSATISPAITTLAKNYQK 202
            +L++                              + R   MFSAT+   +  LAK + +
Sbjct: 542 AVLENMGSLLKSENEEEMEQQLTLANRAQLGEFQHRLRVTTMFSATMPVEVERLAKTFLR 601

Query: 203 DAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILR------------------YHG 243
               V I  E+  ++  I+ R + +    + + +V +LR                    G
Sbjct: 602 HPSIVKIGDEDSGKNKRIEQRVMFMNPGKKRSKLVEVLRDILSAQNVPVPRSRKEKVVDG 661

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK  IVF + +       K ++   F+   L G  +Q +R  +L+M R+G   + +ATDV
Sbjct: 662 AK-IIVFVNIKKECDSVAKFISSEGFRCTILHGGKTQDQREESLKMFREGYCDMLVATDV 720

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A RG+D+PD+  V++ +L S  +N  HR GRTGRAG+ G+++ ++
Sbjct: 721 AGRGLDIPDVTHVVNFDLPSKIQNYSHRIGRTGRAGKDGVAISLL 765


>gi|326487426|dbj|BAJ89697.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 643

 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 117/356 (32%), Positives = 189/356 (53%), Gaps = 20/356 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL   G+   T VQ A +   L  KDV V A TGSGKT+AF + +   L        P 
Sbjct: 37  EALDRGGFRRCTPVQAATIPLLLSHKDVAVDAATGSGKTLAFVVPIVEMLRRLPSPPKPH 96

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQN-GAHIVVG 130
              L + I+PTREL+ Q+    +  +A   GV   + +GG+ +  E   ++  GA+I+VG
Sbjct: 97  QV-LGIIISPTRELSSQIYNVAQPFFATLKGVSSILLVGGLDIRVELEKVEKEGANILVG 155

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPG+L D + R   L   HL+ ++LDEAD +LD+GF+  +  I+   PK RR  +FSAT 
Sbjct: 156 TPGKLFDIMERLDTLEYKHLEILILDEADRLLDMGFQKQVTSIISKLPKLRRTGLFSATQ 215

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDID-----------YRAVLVALSDRDNAIVNI 238
           + A+  LAK   ++ VRV +  E    +  D              ++   + + + +V+ 
Sbjct: 216 TEAVEELAKAGLRNPVRVQVKIEANDAAQQDLGPSKTPLGLRLEYMICEPAKKSSQLVDF 275

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQ---VVALSGELSQQERSNALQMMRDGR 294
           L  +  K  +V+ +T A V  ++ VL   +L +   V+A  G++ Q  R  AL       
Sbjct: 276 LVQNTGKKIMVYFATCACVDYWSVVLPMLNLLKGSPVIAYHGKMKQGPREKALASFSSLS 335

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
           + + + TDVAARG+D+P ++L++  +   +P   +HR+GRT R  ++G + VF++P
Sbjct: 336 SGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFVHRAGRTARYDQEGDAIVFLLP 391


>gi|302412969|ref|XP_003004317.1| ATP-dependent rRNA helicase SPB4 [Verticillium albo-atrum VaMs.102]
 gi|261356893|gb|EEY19321.1| ATP-dependent rRNA helicase SPB4 [Verticillium albo-atrum VaMs.102]
          Length = 425

 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 43/374 (11%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RGY  +T VQ A +   L  KDV+V A TGSGKT+AF L +   LL  ++         A
Sbjct: 26  RGYQRMTPVQAATIPQFLGNKDVVVEAVTGSGKTLAFLLPIVQKLLRLSEPTKRGHV-FA 84

Query: 78  LAIAPTRELAVQVGRELEWLYA-------------------KTGVVVAV---CIGGVSVH 115
           + ++PTRELA Q+   L  L A                    + V +AV    +GG +  
Sbjct: 85  IIVSPTRELAQQIYNVLMGLIAFHTASSEMLPFLKEDDKRPDSAVPIAVPQLLVGGTTTT 144

Query: 116 RERRD--LQNGAHIVVGTPGRLCDHIRGKGLNISH--LKAVVLDEADEMLDLGFRDDIEF 171
           ++     +++  +I+V TPGRL + +    ++ S      +VLDEAD +LD+GFR D++ 
Sbjct: 145 QQDLSFFVRHSPNILVSTPGRLVELLASPHVHCSQSTFDMLVLDEADRILDMGFRQDLQR 204

Query: 172 ILDSSPKKRRMLMFSATISPA----ITTLAKNYQKDAVRV------NIASENRQHSDIDY 221
           IL   PK+RR  +FSA++S A    IT   +N  K AV V      NI  + +  + +  
Sbjct: 205 ILSHLPKQRRTGLFSASVSEAVSQIITVGLRNPVKIAVGVKSLRDGNIIEDRKIPASLQM 264

Query: 222 RAVLVALSDRDNAIVNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHL---FQVVALSG 276
             +L   S +  A+  IL     +   +I+F ST A+V  F  +L + L   F +V L G
Sbjct: 265 AYLLTPASQKMPALAQILDKLNPRPQRSIIFLSTCAAVDYFQHILPDMLPAGFSLVPLHG 324

Query: 277 ELSQQERSNAL-QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           +L  + R  +  + +      V + TD+AARG+D+P ++ V   +  S+P+  +HR+GR 
Sbjct: 325 KLPPKVREKSFNRFLTSVSPSVLLCTDLAARGLDIPQVDFVCQVDPPSDPKVFIHRAGRA 384

Query: 336 GRAGRKGMSVFVIP 349
           G  GRKG +V ++P
Sbjct: 385 GGPGRKGFAVVLLP 398


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 188/362 (51%), Gaps = 8/362 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +AL E      T VQ A +   L  +D+ V A+TGSGKT AF L +   LL  
Sbjct: 8   NLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLHQLLQY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +    P +   AL + PTRELA Q  +++E L   T +   +  GG     +   ++   
Sbjct: 68  S---RPRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRKNP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGRL +H+    L +  L+ +VLDE+D MLD+GF DD+  +      +R+ L+F
Sbjct: 125 EILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRPERQTLLF 184

Query: 186 SATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           SAT    A+  +  +  +D   + + S    +  +  + +    +  ++  +  +L    
Sbjct: 185 SATTGGNAMENMISSVLRDPRSLVLDSVRDLNESVSQQIITADDVKHKERLVQWLLANET 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +TR    R   VL     +V  L GE  Q++R  A+  ++ G  +V +ATDV
Sbjct: 245 YDKAVVFTNTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAMDRLKTGAVKVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           AARGI + +L+LVI+ ++  + +  +HR GRTGR G +G ++ +I     N+    +R  
Sbjct: 305 AARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLMASIQRYL 364

Query: 361 RE 362
           R+
Sbjct: 365 RQ 366


>gi|325185732|emb|CCA20213.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 551

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 175/319 (54%), Gaps = 8/319 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q       L  +D++  A+TGSGKT AF +     L +++   S A     L
Sbjct: 156 GFETPTPIQSQCWPILLSGRDIIGIAETGSGKTFAFTIPGLVHLASQSSPKSKAVKARML 215

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA+Q   E+     K+  +  VC+ GGV+ H +RR L++G  ++V TPGRL D
Sbjct: 216 VVAPTRELAMQTA-EVINKAGKSCNLRCVCLFGGVAKHEQRRQLKSGVDVIVATPGRLND 274

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  +  +++++   VLDEAD MLD GF  DI  I+ S  K+ ++ MFSAT   +I  LA
Sbjct: 275 LVNERVCDLTNVTFTVLDEADRMLDDGFEKDIRLIMSSVHKESQIAMFSATWPQSIQKLA 334

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL-RYHGA-KNAI-VFCS 252
             +  D V+V I S++   S +    ++  + D  RD  I  +L +YH   KN I +F  
Sbjct: 335 HEFLHDPVKVTIGSDDLAAS-VSVTQIVEVIEDRARDARIHALLQKYHYTRKNLILIFVL 393

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +    R  + L    +   A+ G+ SQQ+R+ A++  + G   + IATDVAARG+D+P 
Sbjct: 394 YKKEADRVERDLRYRGWNCAAIHGDRSQQQRNEAVENFKSGDIPLLIATDVAARGLDIPG 453

Query: 313 LELVIHAELSSNPENLLHR 331
           +E VI+       E+ +HR
Sbjct: 454 VEYVINYAFPLTIEDYVHR 472


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 192/404 (47%), Gaps = 34/404 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 179 PSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I++     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASEN--------------RQHSDIDYRAVLVALSDR 231
           AT    + +LA++  ++  + VN+ S                 +H  I    +L+    R
Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           DN  +           IVF  T+ +    TK L       + + G+  Q ER   L   +
Sbjct: 359 DNDRI-----------IVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFK 407

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G++ + IATDVA+RG+D+ D++ V++ +  +  E+ +HR GRTGRAG  G S   +  +
Sbjct: 408 TGKSPILIATDVASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSD 467

Query: 352 MQRRAE---RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             R A    ++ RE+   V     P +E I    A    ++P +
Sbjct: 468 KYRLARDLVKILRESEQPV----PPQLEKISYTSANNPRRNPYY 507


>gi|110004388|emb|CAK98726.1| probable atp-binding rna helicase protein [Spiroplasma citri]
          Length = 460

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 172/332 (51%), Gaps = 8/332 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  +V  T VQE ++   L+ ++V+  A TG+GKT AF L + + +  E  +      
Sbjct: 17  LAELNFVEPTIVQEKVMPLLLKHQNVICKAHTGTGKTFAFCLPILNNINYEQVKIQ---- 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTP 132
             A+ + PTRELA Q+   + +    +  + V   IGG  + R+   LQ    HI++ TP
Sbjct: 73  --AIIVTPTRELAKQIYDNIRFFKKFEPNLQVNYFIGGEDIKRQIEQLQRTQPHIIIATP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
            RL D    + LN+  L   ++DE D + DLGF +++++IL       ++ +FSATI   
Sbjct: 131 TRLKDSFEQQSLNLGKLTTFIIDECDMLFDLGFIENVDYILSKVNSNVQVSVFSATIPHE 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +      Y K+   +++ +    + +I +  +     +R+  ++ +L+       ++F +
Sbjct: 191 LKPFLIKYLKNPHYLDLNANQLTNQNITHILIPTKHQERETILLKLLKTFDPYLCLIFVN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +  ++++  +L EH + V  L   L  + R+  ++ +R+   +  IA+D+AARGID   
Sbjct: 251 KKTDINKYYDLLLEHNYSVAQLHAGLEPRLRTKVVKRIRNLEYKYVIASDIAARGIDFIG 310

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +  VI  +L ++ E   HRSGRTGRA   G S
Sbjct: 311 VSHVISIDLPNDLEYYTHRSGRTGRANYTGYS 342


>gi|325119088|emb|CBZ54640.1| hypothetical protein NCLIV_050680 [Neospora caninum Liverpool]
          Length = 578

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 202/412 (49%), Gaps = 43/412 (10%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L  A   +
Sbjct: 131 YTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAF-LLPAIVHI 189

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 S    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +L+ 
Sbjct: 190 NAQPYLSKGDGPIVLILAPTRELVEQIRTQCRTFAASSKIHHAVAYGGVPKRPQIMELER 249

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R+ L
Sbjct: 250 GAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTL 309

Query: 184 MFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALS------------- 229
           M+SAT    +  LA++  K + V +N+ S + Q      + V+V  +             
Sbjct: 310 MWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQAPTSRQETRKVPRR 369

Query: 230 ------------------DRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                             ++   ++++LR    G+K  ++F  T+      T+ +    +
Sbjct: 370 VEKCADEEEFGDSCGVEYEKRGQLMSLLRRIMDGSK-ILIFAETKRGADNLTRDMRVEGW 428

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             ++L G+  Q+ER+  L   ++GR  + +ATDVA+RG+D+ D+  VI+ ++ +  E+ +
Sbjct: 429 PALSLHGDKKQEERTWVLDEFKNGRNPIMVATDVASRGLDVKDIRHVINYDMPNQIEDYI 488

Query: 330 HRSGRTGRAGRKGMS-VFVIPQN--MQRRAERLFREANVSVVWEPAPSVEAI 378
           HR GRTGRAG KG +  F  P    + R   R+ R AN  V     P +E++
Sbjct: 489 HRIGRTGRAGAKGCAYTFFTPDKSRLARELVRVLRGANQPV----PPELESL 536


>gi|303279012|ref|XP_003058799.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459959|gb|EEH57254.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 183/366 (50%), Gaps = 25/366 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P  +   L   G+   T +Q       L  +DV+  A+TGSGKT++F L  
Sbjct: 59  ITTFEEASFPDYVLSELRAAGFPTPTPIQSQAWPTVLSGRDVVAVAETGSGKTLSFLLPA 118

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+AL +APTRELAVQ+  E     A + +  A   GG     + 
Sbjct: 119 VVHVNAQP-YLEPGDGPIALVLAPTRELAVQIQAEAAIFGASSKIKSACVYGGAPKGPQV 177

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  I   TPGRL D I  + +++  +   VLDEAD MLD+GF   I  I D    
Sbjct: 178 SALRDGVEICAATPGRLIDFIETRAVSLRRVTYFVLDEADRMLDMGFEPQIRKISDRIRP 237

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+F+AT    +  +A ++  D V V +   + + + +I     ++   ++   +V+
Sbjct: 238 DRQTLLFTATWPKEVEGVAADFLHDPVTVRVGDASLKANVNIAQSVDVMDEDEKYGKLVS 297

Query: 238 ILRYH---GAKNA-------------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +L      G K+A             IVF +++A V   T+ L    F  +++ G+ SQ+
Sbjct: 298 LLERQLDGGGKSAEDAEYAAASPRRIIVFLASKAKVDAVTRRLRTDGFPALSIHGDKSQE 357

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL-----HRSGRTG 336
           ER   L   R G + V +ATDVAARG+D+ D+  VI+ +  S+  + L     HR GRTG
Sbjct: 358 EREWVLGEFRAGTSPVMLATDVAARGLDVKDVRCVINHDFPSSGASYLTLDYVHRVGRTG 417

Query: 337 RAGRKG 342
           RAG +G
Sbjct: 418 RAGARG 423


>gi|123413907|ref|XP_001304373.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121885820|gb|EAX91443.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 410

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 186/361 (51%), Gaps = 18/361 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRFSPASAP 75
           G+   + +Q   + P  ++++VL  AQ+G+GKT AF + + +   T L E          
Sbjct: 48  GFKQPSDIQALAIKPICQKRNVLAQAQSGTGKTGAFSIGVLNRIDTSLVETQ-------- 99

Query: 76  LALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            AL +APTREL  Q+   ++ +  K   + + V  GG+SV  ++R  Q    + + TPGR
Sbjct: 100 -ALLLAPTRELVDQIYIFIKQISEKMPNITIEVFKGGLSVTEDQRKAQEKPMVAICTPGR 158

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             D I    L I  L+  VLDEADEML  GF++ ++ I      + +  +FSATI  +  
Sbjct: 159 ALDLISKGYLQIGQLQMFVLDEADEMLSEGFKETVDEICKYLDPEIQTCLFSATIPWSTI 218

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFC 251
           +   N   + V++ + +E      I  +   V + +  N +  +L  +GA N   A++F 
Sbjct: 219 SKIPNLFDNPVKILVKAEKLTLEGI--KQFYVNVGETSNKLSVLLDIYGALNITKAVIFA 276

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +++A+V      L  + F V A+   L+Q ER   ++  R   +RV I+TD+ ARGID+ 
Sbjct: 277 NSKATVDFLKSELEANKFTVSAIHSNLTQVERDTIMKNFRINVSRVLISTDLLARGIDVQ 336

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            + LVI+ EL +  E  LHR GR+GR GRKG+++ +  +   R+   L    +  +   P
Sbjct: 337 QITLVINFELPTTREKYLHRIGRSGRYGRKGVAINICDEGEMRKLRDLEHFYSTQIAELP 396

Query: 372 A 372
           A
Sbjct: 397 A 397


>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 542

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 210/408 (51%), Gaps = 32/408 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSP 71
           +A  E+GY   T +Q  I+   L  KDVL S+ TGSGKT AF L L       ++ ++S 
Sbjct: 104 KACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQRFGNTKSQKYSK 163

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           A     L + PTRELA+Q     + L   +    A+ IG V + ++  +L+    I++ T
Sbjct: 164 A-----LIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRRYPDIIIAT 218

Query: 132 PGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+ D ++    +++S ++ +VLDEAD ++++GF  +I+ IL  +P+ R+ ++ SAT+ 
Sbjct: 219 PGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQTVLVSATLK 278

Query: 191 PAITTLAKNYQKDAVRVNI------ASENRQHS---DIDYRAVLVALSDRDNAIVNILRY 241
             +  L+       V+V++      A   +Q+    D D         DR+  ++ +L+ 
Sbjct: 279 ATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEE------KDREATLIALLQQ 332

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  T+    R   +L         L G L+QQ+R  A +  ++G+ +  +AT
Sbjct: 333 KFIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGKFQYLLAT 392

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--------IPQNMQ 353
           D+AARG+D+ +++ VI+ E+       +HR GRT R G +G+SV +          Q ++
Sbjct: 393 DLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQMIK 452

Query: 354 RRAERLFR-EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
              ++LF+   N+  + E    ++++ E   ++I++  +F   I   E
Sbjct: 453 ESKQKLFKLNFNIESIEEIKSDLKSL-EPKIKKIIKGEVFEKEIHQTE 499


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 184/387 (47%), Gaps = 23/387 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P   V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S 
Sbjct: 162 FTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILSA 221

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           L        P                P AL +APTREL  Q+  E      ++ V  AV 
Sbjct: 222 LFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVV 281

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R L  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   
Sbjct: 282 YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQ 341

Query: 169 IEFILDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I+D        +R+ LMFSAT    I  LA+++ K+ + + +        +I  R  
Sbjct: 342 IRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVE 401

Query: 225 LVALSDRDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + ++++L    +   I VF  T+         L        ++ G+ +Q+ER
Sbjct: 402 YVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQRER 461

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL   + GRA + +AT VAARG+D+P++  VI  +L ++     HR GRTGRAG  G 
Sbjct: 462 EAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGT 521

Query: 344 SVFVIPQ---NMQRRAERLFREANVSV 367
           S     +   N+ +    L +EAN  V
Sbjct: 522 STAFFNRGNTNIGKDLIELLKEANQEV 548


>gi|295671282|ref|XP_002796188.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
 gi|226284321|gb|EEH39887.1| ATP-dependent RNA helicase DBP8 [Paracoccidioides brasiliensis
           Pb01]
          Length = 543

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 30/363 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF    A+ +L    
Sbjct: 122 PWLVG-SLSAMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAF----AAPIL---Q 173

Query: 68  RFSPASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++S    PL   A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L   
Sbjct: 174 KWS--EDPLGIFAVVLTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQR 231

Query: 125 AHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP 177
            H+V+ TPGRL DHI   G      ++  + VVLDEAD +L+ G      D+E  L + P
Sbjct: 232 PHVVIATPGRLADHINSSGRDTICGLNRARFVVLDEADRLLESGPGSMLPDLETCLSALP 291

Query: 178 KK--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALS 229
               R+ L+F+AT++P   A+ ++ +   K  + V  I++EN+      +    +LV L+
Sbjct: 292 PSTARQTLLFTATVTPEVRALKSMPRPASKPPIFVTEISTENQATIPRTLKQSYLLVPLT 351

Query: 230 DRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            R+  +  +L   G  +K AI+FC+   +     ++L     +  +L   L Q ER+  L
Sbjct: 352 HREAFLHVLLSTEGNSSKAAIIFCNRTKTADLLERMLRRLGHRATSLHSLLPQSERTANL 411

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R   A + +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V +
Sbjct: 412 SRFRASAAPILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTL 471

Query: 348 IPQ 350
           + Q
Sbjct: 472 VGQ 474


>gi|312376779|gb|EFR23772.1| hypothetical protein AND_12284 [Anopheles darlingi]
          Length = 1243

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 187/356 (52%), Gaps = 12/356 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + ++ +G++  T +Q    +  +  +D++  A+TGSGKT+A+ L  A   ++  
Sbjct: 87  FPQFMLDEIARQGFLEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILP-ALVHISNQ 145

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    P+AL +APTRELA Q+ +  +    + GV      GG + + +  DL+ G  
Sbjct: 146 PRLARGDGPIALVLAPTRELAQQIKQVSDDFGRRMGVHNTCVFGGAAKYPQENDLRRGVE 205

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 206 IVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLMWS 265

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT    I  LA+ + +D +++NI S N   ++   + +      +++N +  +L    ++
Sbjct: 266 ATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQVIECCEEYEKENRLFMLLEKISSQ 325

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F  T+  V +   ++    ++   + G+ SQ++R   L   R     + +ATD
Sbjct: 326 PDNKAIIFVETKRKVDKIVNIIRRQGWRADGIHGDKSQKDRDYVLNNFRRSPNGLLVATD 385

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE 357
           ++       D++ VI+ +  +N E+ +HR GRTGR+  KG S  F  P N  + ++
Sbjct: 386 MST------DVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANASKASD 435


>gi|242080401|ref|XP_002444969.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
 gi|241941319|gb|EES14464.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
          Length = 946

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 188/358 (52%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +   +  +    +P 
Sbjct: 378 DTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFLLPMLRHV-KDQPPVAPG 436

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTREL VQ+  +++      G+      GG  V ++  +L+ GA IVV TP
Sbjct: 437 DGPVGLIVAPTRELVVQIYLDIKKFSKVLGISCVAVYGGSGVAQQISELKRGAEIVVCTP 496

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ +  + R+ ++FSAT 
Sbjct: 497 GRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRRDRQTVLFSATF 556

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+      V + +   +  + DI     +   S+R   ++ +L ++      +
Sbjct: 557 PRQVEMLARKVLIKPVEIQVGGRSVVNKDITQVVEVRPESERFLRLLELLGKWCDKGKIL 616

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+       K L +H +Q ++L G   Q +R + +   +     + IAT VAARG+
Sbjct: 617 VFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKSNICSLLIATSVAARGL 676

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R A  L +   +S
Sbjct: 677 DVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEEERYAPDLVKALELS 734


>gi|256268858|gb|EEU04210.1| Spb4p [Saccharomyces cerevisiae JAY291]
          Length = 606

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 183/356 (51%), Gaps = 23/356 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---ND 67
           I   L   G+  +T VQ + +      KDV+V + TGSGKT AF + +   ++ E     
Sbjct: 18  IRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVKEEANTS 77

Query: 68  RFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHRERRD--- 120
           +F  A    +L IAPTREL+ Q+       LE   +    +    + G +    R D   
Sbjct: 78  KFKKAHFH-SLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVRDDVSS 136

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   I++GTPGR+ D ++   +  S    VV+DEAD +LD+ F  D E IL   PK+
Sbjct: 137 FLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILRLLPKQ 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+  A + + K   ++ VR+ + S+N+  S +     +V  + +   +V+IL
Sbjct: 197 RRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAVKLQLLVSIL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMM 290
             +  K  IV+  T  SVS F   + ++L          +V +L G+L    R+  L   
Sbjct: 257 NNYKFKKCIVYFPTCVSVSYFYSFI-QYLGKRNILVNEVEVFSLHGKLQTSARTKTLTAF 315

Query: 291 RDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D  +  V   TDVAARGID+PD++LVI  +  +N +  +HR GRTGRA R G ++
Sbjct: 316 TDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371


>gi|330834640|ref|YP_004409368.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
 gi|329566779|gb|AEB94884.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
          Length = 348

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 183/347 (52%), Gaps = 28/347 (8%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+ +   +  AL E  Y   T VQE  +   +  K V+V A+TGSGKT ++   L   L
Sbjct: 1   MFDQLSDQLKRALEEIDYQRPTKVQELTIPVLMSGKSVIVQAKTGSGKTASY---LIPVL 57

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E D          L + PTRELA QV  E + L     + + V IGGV   ++ R  +
Sbjct: 58  EREED---------TLILTPTRELADQVAYEAKRLGKYKRMSIGVIIGGVGYEKQER--E 106

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + + I+VGTPGR+ D + GKG L+++  K  V+DE D MLD+GF +D+  IL S      
Sbjct: 107 SNSDIIVGTPGRILD-LWGKGVLDLARFKVAVVDEVDRMLDMGFIEDVRMIL-SKTDADL 164

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNI 238
              FSAT+   +  LA+ + +DA  + +        + ++  V      RDN    + N+
Sbjct: 165 FGFFSATVPSEVKKLAEGFARDASFLKVDEYKPVEIEHEFYPV------RDNWNEKVYNV 218

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +K  IVF +T++        +++ L  V  L G++SQ  R   L   R G + V 
Sbjct: 219 LKDAKSKT-IVFTNTKSRAEALYDRVSDRL-TVSLLHGDMSQGARRRNLMNFRKGYSDVL 276

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+TD+AARGID+ D+E VI+ +L  + +  +HR GRTGR GR G ++
Sbjct: 277 ISTDLAARGIDVIDVEQVINFDLPRDLDTYIHRVGRTGRLGRTGRAI 323


>gi|11513344|pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
 gi|11513345|pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
          Length = 394

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/313 (32%), Positives = 163/313 (52%), Gaps = 8/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DVL  AQ+G+GKT  F +A    +       +   AP AL
Sbjct: 40  GFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQRID------TSVKAPQAL 93

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+ + +  L     + V  CIGG S   +   L++ A IVVGTPGR+ D+
Sbjct: 94  XLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDN 152

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ +      +K  +LDEADE L  GF++ I  I    P   ++++ SAT    +  +  
Sbjct: 153 IQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVTT 212

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ VR+ +  +      I    V V   + +   + ++        A++FC+TR  V
Sbjct: 213 KFXRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKV 272

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+  +L QQER    +  R G +R+ I+TD+ ARGID+  + LVI
Sbjct: 273 EELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVI 332

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 333 NYDLPANKENYIH 345


>gi|71028514|ref|XP_763900.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
 gi|68350854|gb|EAN31617.1| small nuclear ribonucleoprotein, putative [Theileria parva]
          Length = 744

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 112/366 (30%), Positives = 182/366 (49%), Gaps = 32/366 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+ + GY+  T +Q   +   L  +D++  A TGSGKT AF L + + +  L 
Sbjct: 336 LPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTYVKKLP 395

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +AP+RELA+Q+  E     A         +GG +   +  +L+ G
Sbjct: 396 PLDDETSLDGPYALVLAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAETQAFELRKG 455

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             I++GTPGR+ D +      +S    V+LDEAD M+D+GF D +++ILD  P       
Sbjct: 456 CEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNLKDR 515

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R   MFSAT+ PA+  L K Y +    ++I       + I 
Sbjct: 516 DESSALQQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKTSIT 575

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV-VALSGELS 279
            R   V  S +   +   L        I+F + + +    T V+A+H+ ++ V+L G  +
Sbjct: 576 QRLDFVQESKKTRHLEETLETLEPP-IIIFVNLKKN----TDVIAKHITKIAVSLHGGKT 630

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R +AL   + G   + +ATDV  RG+D+  ++ VI+ ++  + +   HR GRTGRAG
Sbjct: 631 QESREDALNNFKSGVYDILVATDVVGRGLDVEGIKCVINYDMPKDIQTYTHRIGRTGRAG 690

Query: 340 RKGMSV 345
            KG+S+
Sbjct: 691 LKGLSI 696


>gi|294337058|emb|CAX65669.1| vasa-like protein [Isodiametra pulchra pulchra]
          Length = 574

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 12/344 (3%)

Query: 19  GYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASA 74
           GY   T +Q+  + P +R+ +D++  AQTGSGKT AF L + + ++ EN     +     
Sbjct: 136 GYNKPTPIQKYAI-PAVRQGRDIMACAQTGSGKTAAFLLPVIAGIMEENRPASEYDSVQE 194

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ IAPTRELAVQ+ RE + L   + +   V  GGVSV      +  G +I+V TPGR
Sbjct: 195 PSAVIIAPTRELAVQIDREAKKLIHGSILKSVVIYGGVSVAHHASQVARGCNILVATPGR 254

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPA 192
           L   I    +++   K +VLDEAD ML+ GF  ++       P    R+ L+FSAT    
Sbjct: 255 LKGFIEMGKISLKKAKFLVLDEADRMLEEGFEAEVRRAASMMPPNTLRQTLLFSATFPTE 314

Query: 193 ITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH---GAKNAI 248
           +  LA+    +D + + +      ++D+ +    V  +++   +  +         + +I
Sbjct: 315 VQDLARTLLNEDYLFITVGELGAGNADVTHLIFNVPHTEKIGKLKELFSSRIDTSRQKSI 374

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +         L +  +Q  ++ G+  Q+ER  AL+  + G+  + +AT VAARG+
Sbjct: 375 VFVEMKKRCDFLAVQLCQAGYQSTSIHGDREQREREEALRQFKSGQCNILVATAVAARGL 434

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           D+P +  V++ ++    E   HR GRTGR G KG ++ ++ P N
Sbjct: 435 DIPKVMFVVNFDMPKTIEEFTHRCGRTGRVGFKGDAITLLDPTN 478


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 181/346 (52%), Gaps = 9/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   + P ++ +D ++ +Q+G+GKT  F +  A  + ++    S  + P+ L
Sbjct: 41  GFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVG-ALEICSK----SKENVPMVL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    +     +    CIGG  +  + + L +G  I+ GTPGR+   
Sbjct: 96  ILSPTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIKALNSGVSIISGTPGRVLQM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L+   +K +++DEADEM D GF+  +  I    P + + ++ SAT+   I  +A+
Sbjct: 156 IEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTVLVSATLPDDILVMAQ 215

Query: 199 NYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +++ +  E      I  Y   +     +   + ++        +I+FC+T+  V
Sbjct: 216 KFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTLTVTQSIIFCNTKNKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +K + E+ F V  + G+L Q  R   L+  R+G+ RV I TD+  RGID+  + LV+
Sbjct: 276 EWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVV 335

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           + +L  N E  +HR GR+GR GR G+++ +I    ++M    ER +
Sbjct: 336 NYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSLLERFY 381


>gi|123479212|ref|XP_001322765.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121905617|gb|EAY10542.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 536

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 183/344 (53%), Gaps = 11/344 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---- 63
           P+++ E L E+ +     +Q A +   +   D++  +Q G+GKT+A+ + L   +L    
Sbjct: 149 PELVSE-LREQNFAKPLVIQAASIPLSIDSYDIIGLSQPGTGKTLAYVIPLLYYILEYKK 207

Query: 64  --AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              E + FS    PL++ + PT ELAVQV   ++ L    G+      G   ++ +  +L
Sbjct: 208 NHPETNNFS---IPLSVVLVPTHELAVQVQEVIDKLGINLGIKSRTLTGSFRLNDQALEL 264

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  H++V TPGRL D I    +++  +  +V+DEAD+M+D      I FIL+  PK++ 
Sbjct: 265 SHENHVIVATPGRLKDAIEAHLVSVKKVFFIVMDEADKMVDKSLGPQISFILNECPKEKH 324

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT+   + ++ + +    V V++        +I         +DR   ++  LR 
Sbjct: 325 LMMFSATMPHEVLSIVEEFFTKVVTVSVGEIGGASENIKQVVHYCRQADRLGLLLKSLRG 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A   IVF +TR S  +    +  + F+   + G  SQ+ER + ++ +++    V +AT
Sbjct: 385 MKAP-IIVFTNTRDSCEKSAMEIQNNGFRSAFIHGGKSQKERDSIVEGIQNNLFDVLVAT 443

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DV +RGID+P++E V++ EL  N    +HR GRTGR G++G++ 
Sbjct: 444 DVISRGIDIPNVENVVNLELPRNIHTYVHRIGRTGRNGKEGIAT 487


>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
           leucogenys]
          Length = 649

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 205/397 (51%), Gaps = 21/397 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 248 FQCYPEVM-ETIKKAGFPKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 306

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  TL  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 307 LQPTLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 359

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 360 IEELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 419

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 420 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 478

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A V   +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 479 QTFLQNMSSTDKVIVFVSRKAVVDHLSSDLILGNISIESLHGDREQRDREKALENFKTGK 538

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 539 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 598

Query: 355 RAERL---FREANVSVVWEPAPSVEAIRERDAQRILQ 388
            A  L      AN S+  E     E  +    +R ++
Sbjct: 599 VASELINILERANQSIPEELVSMAERFKAHQQKREME 635


>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
 gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
          Length = 807

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 185/349 (53%), Gaps = 16/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   GY+  T +Q A +   L  +DV   A TG+GKT A+ L     LL  
Sbjct: 192 NLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLERLL-- 249

Query: 66  NDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P++A      L + PTREL  QV +  + L   T + V + IGG+ V  +   L+
Sbjct: 250 ---YKPSAAQAVTRVLVLVPTRELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLR 306

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S  K R+
Sbjct: 307 TNPDIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQ 366

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIV 236
            ++FSAT++  +  LA       V+V +   N Q    + R   + +     +DR+  + 
Sbjct: 367 TMLFSATMTDQVKDLAAVSLSKPVKVFV--NNNQTVAFNLRQEFIRIRESRDADREPILA 424

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  
Sbjct: 425 ALICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQID 484

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V +ATDVAARG+D+  ++ VI+  + +  E+ +HR GRT RAG+ G+SV
Sbjct: 485 VLVATDVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGKAGVSV 533


>gi|323455397|gb|EGB11265.1| hypothetical protein AURANDRAFT_1175 [Aureococcus anophagefferens]
          Length = 433

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/370 (33%), Positives = 192/370 (51%), Gaps = 25/370 (6%)

Query: 5   ENIPQVIGEALSERGYVNL---TSVQEAILNPDLREKDVLVSAQTGSG----KTVAFGLA 57
           +N+P  + + L+    +N    T +Q+  +   L   DV+ +AQTGSG    KTVAF L 
Sbjct: 35  KNVPGWLKQTLTAPDRMNYDTPTPIQKHTIPLALAGHDVIATAQTGSGQRSGKTVAFLLP 94

Query: 58  LASTLLAENDRF--SPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCI-GG 111
             ++  A         A+AP  L +APTRELA Q+  E   L +   K+     VC  GG
Sbjct: 95  CVTSAAAARKASRGGGAAAPSTLVLAPTRELATQIADEAVKLTFDAPKSSKNWCVCCYGG 154

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHI-----RGKGLNISHLKAVVLDEADEMLDLGFR 166
            +   +   L  G  I+V TPGRL D +     RG  +++  ++  VLDEAD MLD+GF 
Sbjct: 155 ANARGQLARLARGVEILVATPGRLVDFLERSSDRGPLVSLESVRFAVLDEADRMLDMGFE 214

Query: 167 DDIEFILDSSP--KKRRMLMFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYR 222
             +  I+   P  ++R+ LMFSAT SPA+  +A+ Y   A    V +       + I+ R
Sbjct: 215 PQLRKIVAKLPAARERQTLMFSATFSPAVQQVARAYLDGARVAEVTVGRVGSSVASIEQR 274

Query: 223 AVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V    SD+ + +  +L      +  IVF   +   +   + LA+  F+   + G+ SQ 
Sbjct: 275 LVFSPASDKRSKLELLLPVLAPGEKTIVFVQKKHVATWVKRELAKAKFRAEDIHGDRSQS 334

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP-ENLLHRSGRTGRAGR 340
           +R  AL+  + GR  V +ATDVAARG+D+ D+  V+  +L  +  +  +HR GRTGRAG+
Sbjct: 335 QREAALESFKQGRCDVLVATDVAARGLDVNDVAHVVQFDLPQDDFDTYVHRIGRTGRAGK 394

Query: 341 KGM-SVFVIP 349
            G+ + F +P
Sbjct: 395 TGVATAFFVP 404


>gi|105969677|gb|ABF81676.1| eIF4A [Plasmodium falciparum]
          Length = 696

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------------- 63
            Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L               
Sbjct: 136 NYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 195

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             N  F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  
Sbjct: 196 TSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDK 255

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--------- 174
           GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I  I++         
Sbjct: 256 GADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDN 315

Query: 175 ----SSPK-----------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
               S  K           KR+ +MFSAT    I  LAK Y      + +      +  I
Sbjct: 316 DVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYI 375

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               V V   ++ N ++N+L  +     I+F  T+       + L+      V + G+ S
Sbjct: 376 KQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKS 435

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG
Sbjct: 436 QDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAG 495

Query: 340 RKGMSV 345
             G++ 
Sbjct: 496 NIGIAT 501


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 173/334 (51%), Gaps = 7/334 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D +V A+TGSGKT+A+ + L   ++A+    S    P+ +  AP RELA Q+  E+    
Sbjct: 179 DAIVCAKTGSGKTLAYTIPLIKHVMAQRP-LSKGEGPIGIVFAPIRELAEQINTEINKFG 237

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLD 155
               +      GG  +  +   L+ G  IVV TPGR+ D +    G+  N+  +  VVLD
Sbjct: 238 KYLNIRSVAVFGGTGISNQIGALKRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLD 297

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD M D+GF   I+ I++     ++++MFSAT   ++   A+ + K  + +     ++ 
Sbjct: 298 EADRMFDMGFGPQIKRIIEGIRPDKQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQV 357

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVA 273
            + I+    ++    +   +++I+     K    I+F  T+ +     + L E     + 
Sbjct: 358 SNTIEQIVEVIETKKKIERLISIVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLL 417

Query: 274 LSGELSQQERSNALQMMRDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           L G + Q +R N +Q  + G  R + I T + ARG+D+  LELVI+ +  ++ E+ +HR 
Sbjct: 418 LHGGIDQIDRQNTIQEFKSGIGRTILITTSLCARGLDVKGLELVINYDCPNHLEDYVHRV 477

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GRTGRAG++G ++  I +  +R +E + +   +S
Sbjct: 478 GRTGRAGKRGKAITFITKEEERYSEDIVKALTLS 511


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 181/347 (52%), Gaps = 6/347 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +DV+  A+TGSGKT+AF L +   +L + +       P+A+ 
Sbjct: 312 YKKPTPIQSQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE-LEEMDGPIAVI 370

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q  +E      +  + VA   GGV +  +  DL+ GA +VV T GRL D +
Sbjct: 371 MSPTRELAMQTWKEANKFAKQLDIRVACVYGGVGISDQIGDLKRGAEVVVCTVGRLTDML 430

Query: 140 ---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
              +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT    +  L
Sbjct: 431 AANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEAL 490

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRA 255
           A+      + + +  ++    D++   V++    +   ++ +L  Y    N +VF   + 
Sbjct: 491 ARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGNVLVFVDKQE 550

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L    +    L G + Q +R + +   + G+ ++ +AT VAARG+D+  L L
Sbjct: 551 KADDLVTQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLIL 610

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           V++ +  ++ E+ +HR GRTGRAG KG +  F++P   +R A  + R
Sbjct: 611 VVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQERMAGEVCR 657


>gi|66816623|ref|XP_642321.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
 gi|74997195|sp|Q54Y81|DDX23_DICDI RecName: Full=ATP-dependent RNA helicase ddx23; AltName:
           Full=ATP-dependent RNA helicase helB2; AltName:
           Full=DEAD box protein 23
 gi|60470121|gb|EAL68101.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
          Length = 834

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 27/374 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I EA+ + GY   + +Q   +   L  +D+L  A+TGSGKT AF + +    +++
Sbjct: 419 NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPML-IYISK 477

Query: 66  NDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             R +    A  P AL +APTREL  Q+ +E        G  V   +GG S+  +   + 
Sbjct: 478 QPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVS 537

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G  I++ TPGRL D +  + L ++    +VLDEAD M+DLGF   +  +LD+ P     
Sbjct: 538 KGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLK 597

Query: 180 ------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                             R  ++FSAT+ P +  L+K Y +    + I    +    I  
Sbjct: 598 SEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQ 657

Query: 222 RAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V + +D+   +  +++       I+F + +        VL E       L    SQ
Sbjct: 658 TVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQ 717

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IAT VA+RGI +  +  VI+ ++  N E+  HR GRTGRAG 
Sbjct: 718 EQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 777

Query: 341 KGM-SVFVIPQNMQ 353
            G+ S F+  ++++
Sbjct: 778 AGLASSFITDKDVE 791


>gi|223994927|ref|XP_002287147.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220976263|gb|EED94590.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 576

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/354 (34%), Positives = 183/354 (51%), Gaps = 27/354 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G   +T VQ       L   DVL  A+TG+GKT+AF L  A   +  N  F        L
Sbjct: 102 GLQTMTEVQAKTFTAALSGSDVLARARTGTGKTLAF-LIPAVERIVRNINFVGGQGIGCL 160

Query: 79  AIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLC 136
            +APTRELA+Q+G E E  L   + + V V  GG  + R+   +      ++V TPGRL 
Sbjct: 161 VVAPTRELAIQIGEEAEKLLLHHSDLTVQVMYGGTKMARDMHAMNKRLPTVLVATPGRLL 220

Query: 137 DH-----IRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFS 186
           DH     +RG+  +   I++   VVLDE D +LD+GFR DI+ IL   P+K  R+ ++FS
Sbjct: 221 DHLQETKVRGRKFSDDVIANTDIVVLDEIDRLLDMGFRRDIQRILSYLPRKEKRQTMLFS 280

Query: 187 ATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRYHG 243
           ATI   +  + + + ++D + V+   + R  +  + R     + LSD  + +++I  Y  
Sbjct: 281 ATIPKGMKGIMRESLKEDYLEVDCVQDGRDSTPTNVRVTQSHIVLSDMKSVMMSI--YTI 338

Query: 244 AKNA--------IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGR 294
            K+A        +VF  T   VS F   L + L F V+ L  + SQ  R+ A +  R  +
Sbjct: 339 LKHATNSKPYKIVVFFPTARMVSFFADFLNDGLEFPVMELHSKKSQSSRNTASENFRQAK 398

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             V   +D++ARGID PD+  VI   L  + E  +HR GRT RAG++G  + V+
Sbjct: 399 NAVLFTSDLSARGIDYPDVTQVIQIGLPESREQYIHRLGRTARAGKEGDGLLVL 452


>gi|89094563|ref|ZP_01167501.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89081162|gb|EAR60396.1| probable ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 410

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 193/370 (52%), Gaps = 19/370 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ + E L     ++ T VQ+  +   L   D+L+S+ TGSGKT A+ + +   L A   
Sbjct: 9   PQ-LEENLKSSELLSATEVQQQAIPLALEGADLLISSPTGSGKTAAYLIPVIQELSAGK- 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             SP   P A+ + P RELA Q+    + L A   +     +GG    ++ + L   A +
Sbjct: 67  --SPTRQPKAIVLVPVRELAEQIASFFDKLAAGLDLNAVAIVGGEDFKKQEKQLAR-ADL 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL  H+  + + +  L  +VLDEAD +L+ GF++ ++ IL   P+ R+ L+ SA
Sbjct: 124 VVATPGRLIPHLENRSIELDSLDLLVLDEADRILETGFKEALDQILTLCPEARQTLLVSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYHG 243
           T+  ++  LA+   ++   V +  +    ++I+ R +L   SD    +D  +  +L    
Sbjct: 184 TLPTSVRKLAERILQEPEWVRVGQKREVEANIEQRIIL---SDDQTLKDKQLCWLLENES 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VFC+++    R    +  H F+   L G++ Q+ R   ++  R G  ++ + TD+
Sbjct: 241 YDKAVVFCNSKTEARRLDGFIRYHKFKAALLHGDVQQKGRFATIEGFRKGTTKILVTTDL 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRA 356
           AARG+D+  ++LVI+ E+    +  +HR GRTGR G  G +V +I         +++R  
Sbjct: 301 AARGLDIEGVDLVINTEIPRKGDLYIHRIGRTGRGGASGKAVSLISPAEWNLMSSIERYL 360

Query: 357 ERLFREANVS 366
           +  FR++ +S
Sbjct: 361 KTRFRKSEIS 370


>gi|297736067|emb|CBI24105.3| unnamed protein product [Vitis vinifera]
          Length = 536

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 168/319 (52%), Gaps = 7/319 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EA    G+   + +Q   +   L  KD++  AQTGSGKT AF L +   LL   
Sbjct: 16  ICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQALL--- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A  ++PTRELA+Q+  + E L +  G+  AV +GGV   ++   L    H
Sbjct: 73  ---DTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQAIALAKRPH 129

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVVGTPGRL DH+   KG ++  +K +VLDEAD +L+  F   I+ IL   P++R+  +F
Sbjct: 130 IVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPRERKTYLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   ++ V++ +AS+      +  +   V    ++  +V IL      
Sbjct: 190 SATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGS 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T  +      +L     + + +SG +SQ +R  AL   + G   + I TDVA+
Sbjct: 250 TTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNILICTDVAS 309

Query: 306 RGIDLPDLELVIHAELSSN 324
           RG+D+P +++VI+ ++ SN
Sbjct: 310 RGLDIPSVDMVINYDIPSN 328


>gi|149033136|gb|EDL87954.1| rCG37594 [Rattus norvegicus]
          Length = 623

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + +   ++    +F P 
Sbjct: 145 KAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPR 202

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +IVV TP
Sbjct: 203 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATP 262

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 263 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 322

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 323 KVEDLARISLKKEPLYVGV-DDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 381

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 382 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 441

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 442 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 488


>gi|251779418|ref|ZP_04822338.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083733|gb|EES49623.1| ATP-dependent RNA helicase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 382

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 191/361 (52%), Gaps = 12/361 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL ++     T +Q  ++N  L  KD++  + TGSGKT+A+ L +   +  E
Sbjct: 9   NLNSDIISALEKQNITVPTEIQSLVINEALENKDIIGESFTGSGKTLAYVLPIFERINTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
                      A+ +APT EL +Q+  +++ L   +G+ V     IG V+++ + + L+ 
Sbjct: 69  KKDIQ------AIILAPTHELVMQIEAQIKLLSDNSGINVKSLGIIGDVNINNQIKKLKE 122

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD      ++ I+ ++ + R++
Sbjct: 123 VKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIVKDIIKTTMRDRQL 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSA+I+P I    K   KD + V    ++  + +I +  V     D+   +  I+   
Sbjct: 183 MAFSASITPEIVDSLKELMKDPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++F +    +   +  L  H  +  A+SG +S++ER NA+   + G+ ++ +++D
Sbjct: 243 DPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILVSSD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V+ARG+D+ D+  V + +L    +  LHRSGRT R   KG S+ ++     N+ ++ E+ 
Sbjct: 303 VSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKYEKA 362

Query: 360 F 360
           F
Sbjct: 363 F 363


>gi|55741498|ref|NP_001006997.1| ATP-dependent RNA helicase DDX18 [Rattus norvegicus]
 gi|54035578|gb|AAH83919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Rattus norvegicus]
          Length = 674

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 197/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + +   ++    +F P 
Sbjct: 196 KAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPR 253

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +IVV TP
Sbjct: 254 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIVVATP 313

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 314 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 373

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 374 KVEDLARISLKKEPLYVGV-DDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 432

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 433 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 492

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 493 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 539


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 67

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 68  VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 127

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 128 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 187

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 188 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 245

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 246 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 305

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 306 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 338


>gi|153821037|ref|ZP_01973704.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255746274|ref|ZP_05420221.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|126521411|gb|EAZ78634.1| ATP-dependent rna helicase, dead box family [Vibrio cholerae B33]
 gi|255736028|gb|EET91426.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 406

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 174/346 (50%), Gaps = 17/346 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + + +P+ I E          +++Q  ++   L  KDV   A TGSGKT+A+GL L    
Sbjct: 12  LIQALPKAITEP---------SAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL--- 59

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +R   +    AL + PTRELA+QV   L  +    G+      GGV    ++  L 
Sbjct: 60  ----ERLKTSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALA 115

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +I+V T GRL D +   GL ++ +  +VLDEAD +LD+GF   ++ +   +   R+ 
Sbjct: 116 ENPNILVATTGRLFD-LTQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQT 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H
Sbjct: 175 VMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQH 234

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +    TK L +       L G+ SQ ER  AL   ++G  +V IATD
Sbjct: 235 QWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIATD 294

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + ARGI +  L +VI+ EL  + E  +HR GRT RAG+ G+++ ++
Sbjct: 295 LLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLV 340


>gi|296331839|ref|ZP_06874304.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673451|ref|YP_003865123.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150917|gb|EFG91801.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411695|gb|ADM36814.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 376

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 194/365 (53%), Gaps = 10/365 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N    I E  +  G+   T VQE      +  +DV+  + TG+GKT+A+ L +     
Sbjct: 8   LHNAQSFIQENWNASGFQKPTPVQEQAAQLIMDGRDVIAESPTGTGKTLAYALPVM---- 63

Query: 64  AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              DR  P    P  + +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+
Sbjct: 64  ---DRIKPEQKHPQTVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQIEKLK 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VGTPGR+ + I+ K L +  +K +VLDE D+++    R+ I+ I+ ++ + R++
Sbjct: 121 KHPHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLILPEHRETIKQIIKTTLRDRQL 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L FSAT+      + +   ++   + +     +   + ++ ++    D+   +  + R  
Sbjct: 181 LCFSATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVRLLQKLSRLQ 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G + A+VF     ++S + + LA H   +  L  E  + ER+  +    DG   + +ATD
Sbjct: 241 GMQ-ALVFVRDIGNLSVYAEKLAYHHVDLGVLHSEAKKMERAKIIAAFEDGEFPLLLATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++
Sbjct: 300 IAARGLDIENLPYVIHADI-PDEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKK 358

Query: 363 ANVSV 367
             V +
Sbjct: 359 LGVEL 363


>gi|259486129|tpe|CBF83723.1| TPA: ATP-dependent RNA helicase eIF4A (EC 3.6.1.-)(Eukaryotic
           initiation factor 4A)(eIF-4A)(Translation initiation
           factor 1) [Source:UniProtKB/Swiss-Prot;Acc:Q5B948]
           [Aspergillus nidulans FGSC A4]
          Length = 398

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 165/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASAPLA 77
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    L        P   A  A
Sbjct: 44  GFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKL-------DPNVKACQA 96

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA Q+ + +  +     +    CIGG +V  +   L+ G  IVVGTPGR+ D
Sbjct: 97  LIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHD 156

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I+ + L    +K  +LDEADEML  GF + I  I    P+  ++++ SAT+   +  + 
Sbjct: 157 MIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVT 216

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  
Sbjct: 217 TKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRK 276

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LV
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 337 INYDLPANRENYIH 350


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 183/345 (53%), Gaps = 5/345 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +AL E      T VQ A +   L  +D+ V A+TGSGKT AF L +   LL  
Sbjct: 8   NLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPMLHQLLQY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +    P +   AL + PTRELA Q  +++E L   T +   +  GG     +   ++   
Sbjct: 68  S---RPRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQAAKMRKNP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGRL +H+    L +  L+ +VLDE+D MLD+GF DD+  +      +R+ L+F
Sbjct: 125 EILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRAERQTLLF 184

Query: 186 SATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           SAT    A+  +  +  +D   + + S    +  +  + +    +  ++  +  +L    
Sbjct: 185 SATTGGNAMENMISSVLRDPKSLVLDSVRDLNESVSQQIITADDVKHKERLVQWLLANET 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A+VF +TR    R   VL     +V  L GE  Q++R  A+  ++ G  +V +ATDV
Sbjct: 245 YEKAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAMDRLKAGAVKVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGI + +L+LVI+ ++  + +  +HR GRTGR G +G ++ +I
Sbjct: 305 AARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLI 349


>gi|156044094|ref|XP_001588603.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980]
 gi|154694539|gb|EDN94277.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 573

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 196/354 (55%), Gaps = 17/354 (4%)

Query: 6   NIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+     +AL+E   +  +T +Q   + P L  +DVL +A+TGSGKT++F +     L  
Sbjct: 102 NLSDKTMKALTEDMKFDTMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML-- 159

Query: 65  ENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + RF P +    + ++PTRELA+Q   V REL   +++T     + +GG +   E   L
Sbjct: 160 HSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVMGGANRRAEAEKL 216

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
             G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L+ GF D+++ I+   PK  
Sbjct: 217 VKGVNLLIATPGRLLDHLQNTQGFIFKNLKALVIDEADRILEAGFEDEMKQIVKVLPKDD 276

Query: 180 RRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AI 235
           R+ ++FSAT +  +  LA+ + +   + +N+ ++ ++HS ++       + D D     +
Sbjct: 277 RQTMLFSATQTTKVEDLARISLRPGPLYINVDNK-KEHSTVEGLEQGYVVCDSDKRFLLL 335

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + + 
Sbjct: 336 FSFLKRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ 395

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVI 348
              I TDVAARG+D+PD++ VI  +   +P + +HR GRT R    KG S+  +
Sbjct: 396 GTLICTDVAARGLDIPDVDWVIQFDPPDDPTDYIHRVGRTARGNDGKGRSLLFL 449


>gi|330887731|gb|EGH20392.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. mori str.
           301020]
          Length = 427

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 176/333 (52%), Gaps = 15/333 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L 
Sbjct: 100 FSLAPELM-HAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLT 158

Query: 64  AENDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                 +P  A      P AL IAPTREL VQ+ ++   L   T + V   +GG+   ++
Sbjct: 159 Q-----TPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQ 213

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L+     I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +
Sbjct: 214 LKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 273

Query: 177 PKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P K  R+ L+FSAT +  +  LAK +  D   V I S N    +++     VA +D+   
Sbjct: 274 PHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKL 333

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N++  +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+
Sbjct: 334 LYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGK 393

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            RV +ATDVA RGI +  +  VI+  L   P++
Sbjct: 394 IRVLVATDVAGRGIHIDGISHVINFTLPEVPDD 426


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 180/344 (52%), Gaps = 11/344 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   +   +   DV+  AQ+G+GKT  F + +   +  +           AL
Sbjct: 42  GFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQ------AL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCD 137
            ++PTRELA Q+ + +  L     V      GG ++  +   +Q NG  +V GTPGR+ D
Sbjct: 96  VLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLD 155

Query: 138 HIRGKGLNISHLKAVVLDEADEML--DLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
             +   LN  +++ ++LDEADE+L   LGF+  I  I    P   ++++ SAT+S  I  
Sbjct: 156 MFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILE 215

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           + K +  D V++ +  +      I    V V   D + + + ++         ++FC+T+
Sbjct: 216 VTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDLYDSLTITQCVIFCNTK 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   +  L +  F VV++ G++ Q++R+  +   R G +RV I+TDV ARGID+  + 
Sbjct: 276 KKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVS 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAE 357
           LVI+ ++    EN +HR GR+GR GRKG+++ F+   ++ +  E
Sbjct: 336 LVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMKE 379


>gi|304414180|ref|ZP_07395548.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283394|gb|EFL91790.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 431

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 178/343 (51%), Gaps = 8/343 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---A 64
           PQVI E L   G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   A
Sbjct: 18  PQVI-EVLENEGFHNCTPIQALTLPITLTGQDVAGQAQTGTGKTLAFLASTFHHLLSFPA 76

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  +    + P AL + PTRELA+Q+  +   L   +G+ + +  GG    ++ + L+ G
Sbjct: 77  EEGKM--INQPRALIMGPTRELALQIHADAVSLSQSSGLKLGLAYGGDGYDKQLKVLEKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GR+  + +   +N++ ++ VVLDEAD M D+ F  DI ++  S P   KR  
Sbjct: 135 VDILIGTTGRIIGYAKQGYINLAAIQVVVLDEADRMCDISFIKDIRWLFHSMPSADKRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +   V +    +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSCRVHELAFELMHNGQYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F +T+       + LA    +V  L+G+++Q++R   L+    G   + +ATD
Sbjct: 255 WPDRCIIFSNTKHRCEDIWRHLAADGHRVGLLTGDVAQKKRQRILEEFTKGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 315 VAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSI 357


>gi|257456998|ref|ZP_05622179.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
 gi|257445707|gb|EEV20769.1| ATP-dependent rRNA helicase RRP3 [Treponema vincentii ATCC 35580]
          Length = 434

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 35/391 (8%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F NIP  +   E L+  G ++ T +QE ++   L  K V   ++TG+GKT+AF L L
Sbjct: 38  MTDFLNIPLYEPFVETLAAGGIIHPTPIQEKVIPLALEGKSVFFESETGTGKTLAFLLPL 97

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGV 112
            + L+ +  +    +AP  L ++PT ELA Q+      L      Y KT     +C+GG 
Sbjct: 98  FTRLMQDEKK---TTAPRILILSPTVELASQIKETAAQLQGSGTQYFKT----LLCVGGS 150

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S+ R+   L+    +++GTP R+ D I  K L +  + AVV+DEAD  L    RD ++ +
Sbjct: 151 SLKRQIEGLKEKPAVIIGTPARISDLIGLKKLKLQEITAVVIDEADRQLARESRDALQTV 210

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL------- 225
           L + P+  + L  SAT +     L   +    +R + A+E  +   I +  VL       
Sbjct: 211 LATLPQDVQALACSATFNGKNIELLNGF----LRRSSAAELPECLSIAHTGVLQNSIEHW 266

Query: 226 VALSDRDN------AIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              S+R N      A+++ L     H AK  ++F +    V    + L       V L G
Sbjct: 267 ALFSERRNKADTLRALIHALDNTSVHSAKKMLIFTAPAQEVETLAQKLQHKKIDAVPLYG 326

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           +L   ER   +   R G+ R+ I +D++ARG+D+ D++ ++  +LS + +  +HR+GRTG
Sbjct: 327 KLEGSERKQIIARFRSGKTRILITSDLSARGLDIADIDYIVQMQLSKDADAFIHRAGRTG 386

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           RAG+KG+++ +  +   R  + L ++  ++V
Sbjct: 387 RAGKKGVNIVIGDEYELRILQALEKKLGITV 417


>gi|225559047|gb|EEH07330.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus G186AR]
          Length = 631

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 202/373 (54%), Gaps = 17/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A 
Sbjct: 158 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL 217

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 218 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLT 272

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 273 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 332

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           + ++FSAT +  +  LA+ + ++  + +N+    ++HS ++       + D D     + 
Sbjct: 333 QTMLFSATQTTKVEDLARISLRQGPLYINV-DHRKEHSTVEGLEQGYVICDSDKRFLLLF 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +    
Sbjct: 392 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQG 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +  
Sbjct: 452 TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVG 510

Query: 356 AERLFREANVSVV 368
             +  +EA V VV
Sbjct: 511 FLKHLKEARVPVV 523


>gi|294658221|ref|XP_002770738.1| DEHA2F04466p [Debaryomyces hansenii CBS767]
 gi|218511822|sp|Q6BML1|PRP5_DEBHA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|202952969|emb|CAR66268.1| DEHA2F04466p [Debaryomyces hansenii]
          Length = 913

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 190/381 (49%), Gaps = 18/381 (4%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   +  R  Y + +S+Q   +   +  +D++  A+TGSGKT++F L L   +  +
Sbjct: 323 LPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHI-QD 381

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L + PTRELA+Q+ +EL     K  +    C GG S+  +  +L+ GA
Sbjct: 382 QPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGA 441

Query: 126 HIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D +    G+  N+  +  +VLDEAD M D+GF   +  +       R+ 
Sbjct: 442 QIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQT 501

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-------RDNAI 235
           ++FSAT    +  LAK    + + + +   +   S+I  +  L    D       + + +
Sbjct: 502 VLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKL 561

Query: 236 VNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           ++ L  +G K+A    ++F   + +       L    +  +A+ G   Q +R +A++   
Sbjct: 562 LSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFS 621

Query: 292 DGRA--RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
              +   + IAT +AARG+D+  L LVI+ E +S+ E+ +HR GRTGRAGRKG ++  + 
Sbjct: 622 SSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVS 681

Query: 350 QNMQRRAERLFREANVSVVWE 370
               R    L +   +S V E
Sbjct: 682 SKQGRAITDLVKAMRLSKVSE 702


>gi|146422477|ref|XP_001487176.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
 gi|152032535|sp|A5DB98|IF4A_PICGU RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|146388297|gb|EDK36455.1| eukaryotic initiation factor 4A [Meyerozyma guilliermondii ATCC
           6260]
          Length = 396

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 10/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY + +++Q+  + P    +DVL  AQ+G+GKT  F ++ A   + EN       A  AL
Sbjct: 41  GYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTIS-ALQRIDEN-----LKATQAL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D 
Sbjct: 95  ILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  +      +K  ++DEADEML  GF++ I  I    P+  ++++ SAT+   +  +  
Sbjct: 155 IERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTT 214

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  + VR+ +  +      I    + V   D + + + ++        A++FC+TR+ V
Sbjct: 215 KFMNNPVRILVKKDELTLEGIKQFYINVEQEDFKFDCLCDLYDSISVTQAVIFCNTRSKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+  +L Q +R   +   R G +R+ IATD+ ARGID+  + LVI
Sbjct: 275 EFLTTKLKAENFTVSAIHADLPQSDRDTIMNEFRSGSSRILIATDLLARGIDVQQVSLVI 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN--MQRRAERLF 360
           + +L +N EN +HR GR GR GRKG+++ FV  ++  M R  E+ +
Sbjct: 335 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTDEDVGMMREIEKFY 380


>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 448

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 168/319 (52%), Gaps = 5/319 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+SE GY   T +Q   + P L  KD++  AQTG+GKT +F L +   L     R   A 
Sbjct: 15  AVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMIDILAHGRSR---AR 71

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P +L + PTRELA QV    E       + +A+ IGGV++  +   L+ G  +++ TPG
Sbjct: 72  MPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLIGGVNMGDQVAALEKGVDVLIATPG 131

Query: 134 RLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL D   RGK L ++    +V+DEAD MLD+GF  DIE I    P +R+ L+FSAT+   
Sbjct: 132 RLMDLFGRGKIL-LTGCSLLVIDEADRMLDMGFIPDIEEICTKLPAQRQTLLFSATMPAP 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA  +  +  ++ ++     +  ID   V  +   +   +  +L       AI+F +
Sbjct: 191 IKKLADKFLSNPKQIEVSRPASTNLAIDQSLVETSSRAKRETLRGLLNGGDVSTAIIFSN 250

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +V    + L  + F+   + G++ Q ER   L   + G   + +A+DVAARG+D+  
Sbjct: 251 RKTTVRDLAQSLGRYGFRAGQIHGDMEQPERLRELDRFKGGEINILVASDVAARGLDIKG 310

Query: 313 LELVIHAELSSNPENLLHR 331
           +  VI+ ++  +P++ +HR
Sbjct: 311 VSHVINFDVPWHPDDYVHR 329


>gi|152996141|ref|YP_001340976.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837065|gb|ABR71041.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 452

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 191/359 (53%), Gaps = 16/359 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+P  + ++++E G+   + +Q   L   L   D++  AQTG+GKT AF +A+ S  L  
Sbjct: 77  NLPDRVIKSIAEMGFEYCSEIQAETLPMTLLGYDIIGQAQTGTGKTAAFLIAMISDFLDY 136

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E  R +  +    L IAPTRELA+Q+  E   L +   + V   +GG+S  +++  L+
Sbjct: 137 PLEEKRAN--NFARGLIIAPTRELAIQIADEAVKLTSNCHLNVVTLVGGLSYEKQKIALE 194

Query: 123 N-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-- 179
                I+V TPGRL D  R + + +  ++ +VLDEAD ML +GF  D++ I+  +P K  
Sbjct: 195 TENVDILVATPGRLLDFARSRKVQLGKVECLVLDEADRMLSMGFIPDVKSIIRMTPHKET 254

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT    I  LA+ +      V++  +   + +ID     V    +   +  ++
Sbjct: 255 RQTMLFSATFPKDIQALAQQWTYFPKEVSVVPKEATNQNIDQVIYTVEADQKWPVLQQLI 314

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +G +  I+F + R       + L +       LSGE++Q +R   L   ++G  +V +
Sbjct: 315 EKNGGQRTIIFANRRDETRDLYERLRKANINCAILSGEVAQDKRVKTLANFKEGIIQVLV 374

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV--------FVIPQ 350
           ATDVA RGI + ++ELV++  L  +PE+ +HR GRTGR G  G SV        F+IP+
Sbjct: 375 ATDVAGRGIHVDNVELVVNYSLPEDPEDYVHRIGRTGRGGETGKSVSFASEDDAFMIPE 433


>gi|226289750|gb|EEH45234.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 172/332 (51%), Gaps = 7/332 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 136 FPQYVMTEVKAQGFSRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
              +P   P+ L +APTRELAVQ+  E+   + K+  +   C+ GGV    + RDL  G 
Sbjct: 195 PLLAPGDGPIVLVLAPTRELAVQIQTEIT-KFGKSSRIRNTCVYGGVPKGPQIRDLTRGV 253

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+
Sbjct: 254 EVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMW 313

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT    +  LA+++  D ++VNI S +    H       ++     R+    ++ R   
Sbjct: 314 SATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAKHLERIMD 373

Query: 244 AKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            KNA  ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +AT
Sbjct: 374 DKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVAT 433

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           DVA+RGID+ D+  V++ +  +N E+ +HR G
Sbjct: 434 DVASRGIDVRDITHVLNYDYPNNSEDYVHRIG 465


>gi|170582680|ref|XP_001896237.1| CG10333-PA [Brugia malayi]
 gi|158596582|gb|EDP34904.1| CG10333-PA, putative [Brugia malayi]
          Length = 719

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 176/361 (48%), Gaps = 33/361 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   + +  
Sbjct: 319 LPAEVFDVIMKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITSIP 378

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               ND     + P A+ +APTRELA Q+  E        G+     IGG S   +   L
Sbjct: 379 KFHGND--DQDTGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQGLKL 436

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  +V+ TPGRL D +  + L++     V+LDEAD MLD+GF  +++ +L+  P    
Sbjct: 437 RLGVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIPVTNL 496

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+SPAI  LA+ Y +    V I S  R  
Sbjct: 497 KPDTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSIGRPT 556

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALS 275
             ++    ++    +   +V ++     +   I+F + +       K L +  FQ   L 
Sbjct: 557 ERVEQIVYMIGEESKRKKLVELISSDAFEPPIIIFVNQKRGADMLAKGLTKLGFQPCVLH 616

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q  R  +L  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRT
Sbjct: 617 GGKGQDAREYSLAALKDGTKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRT 676

Query: 336 G 336
           G
Sbjct: 677 G 677


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 110 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 168

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 169 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 228

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 229 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 288

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 289 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 346

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 347 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 406

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 407 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 439


>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 684

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 170/328 (51%), Gaps = 7/328 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY   T +Q   +   LR  D++  A+TGSGKT A+ + + + L   +          
Sbjct: 30  KKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINRLETHS-----TEGVR 84

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +L I PTRELA+Q  +    L   T +  ++ IGG  +  +  +L +G  I+V TPGRL 
Sbjct: 85  SLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGPDIIVATPGRLT 144

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             + G  ++++ ++ V  DEAD M + GF + +  I+   P  R++L+FSAT+   +   
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAEF 204

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTR 254
            KN  K    + + +E R   D+D     V   +++  ++ +L       +  +VFC+TR
Sbjct: 205 LKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKEGHLLYLLLDLIGDKEQTVVFCATR 264

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    ++L     +   + G+  QQER   L+  R     V + TDVAARG+D+P+L+
Sbjct: 265 HEVEYLNEILKIFDIKTSIMFGKADQQEREINLKKFRKQETHVLLVTDVAARGVDIPELD 324

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
            VI+ +  + P+  +HR GR  RAGR G
Sbjct: 325 NVINYDFPATPKLYIHRCGRVARAGRMG 352


>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
 gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
          Length = 397

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 186/346 (53%), Gaps = 4/346 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           + Q + +A+ E GY   T++Q   +   L+  +++ +AQTG+GKT +F L +   L A +
Sbjct: 8   LSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPILERLSAGQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R   A A   + + PTRELA+QV + +E     T +      GGV    +++ L +G 
Sbjct: 68  TERKKRARA---IILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQALIDGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF + I  I+   P+  + L+F
Sbjct: 125 DIVVATPGRLIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQSLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK+   +   + I   +   S+I    V V    + + + ++L+ +  K
Sbjct: 185 SATLSNPVRDLAKSAIDNPEEIAITKHSASKSNIKQWIVTVDKDMKSSLLSHLLQQNQWK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAA
Sbjct: 245 QALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLIESFKAGEIQYLVATGVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           RGID+ +L +VI+ +L    +  +HR GRTGRA   G ++ ++ ++
Sbjct: 305 RGIDIENLPVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKD 350


>gi|255530922|ref|YP_003091294.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343906|gb|ACU03232.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 435

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 175/330 (53%), Gaps = 12/330 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL-ALAIA 81
           L  +Q   L    + +DVL+ A TGSGKT+ F L L + L        PA   + AL + 
Sbjct: 15  LNQMQLETLAASKKGQDVLLLAPTGSGKTLGFLLPLLNNL-------DPAIVGVQALVLV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           P+RELA+Q+  E+ +    TG  V  C GG  V  ER + +    +++GTPGR+  H+R 
Sbjct: 68  PSRELALQI--EMVFRQMGTGFKVNCCYGGHPVKTERNNFEQPPAVLIGTPGRIAYHLRH 125

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           +  + S +  +VLDE D+ L+ GF++D+ +I+      ++ L+ SAT    I       Q
Sbjct: 126 ENFDESGITTLVLDEFDKALEFGFQEDMSYIIRKLLSLKQRLLTSATSMEEIPGFTGIDQ 185

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
              V VN   +     D++ + V    +D+ + ++ ++   G K  ++FC+ R +V R +
Sbjct: 186 --PVEVNFLKDVAAAPDLELKKVNTTAADKLDTLLRLICKIGDKRTLIFCNHRETVDRIS 243

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            +L +         G + Q ER  AL   R+G  ++ I TD+A+RG+D+P++E +IH +L
Sbjct: 244 DLLIDQDLAHDIFHGGMEQDERERALLKFRNGSIKILITTDLASRGLDIPEVECIIHYQL 303

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
               +  LHR+GRT R   KG +  VI ++
Sbjct: 304 PYTEDAFLHRNGRTARMNAKGTAYLVIAED 333


>gi|118376356|ref|XP_001021360.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89303127|gb|EAS01115.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 598

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 197/363 (54%), Gaps = 26/363 (7%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           ++F  + + + +AL   GY  +  VQ+A +   ++  D+ V AQTGSGKT+AF L + + 
Sbjct: 14  RLFPQVEKCVKDAL---GYETMMPVQKATIPLFIKNHDLAVEAQTGSGKTLAFLLPIFNV 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+ +  + +  +   AL IAPTRELA Q+     +L          + +CIGGVS   + 
Sbjct: 71  LIKQV-KTANKNCVYALVIAPTRELAKQIHEIAVQLASHLENNQFSIQLCIGGVSTKIDV 129

Query: 119 RDLQN-GAHIVVGTPGRLCDHIRGKGLNIS----HLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++Q+ GA+I++ TPG+L + +  K L  S    +L+ +++DEAD ++D  + +D+ + L
Sbjct: 130 SNIQSQGANILIATPGKLKELMDMKELEDSLIFRNLEILIMDEADRLMDTEYYEDMTYAL 189

Query: 174 DSSPKKRRMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDY------RAVLV 226
           +  PK+RR  +FSAT+S A ++ L K   ++ V+V++     + ++ +Y          +
Sbjct: 190 EKLPKQRRTGLFSATLSSAKLSELIKYGLRNPVKVSVKPGGEKANNTNYVVPSTLENSYL 249

Query: 227 ALSDRDNAIVNILRY---HGAKNAIVFCSTRASVSRFTKVLAEHLF----QVVALSGELS 279
            L +R   I  +L +   +  +  I+F +T ASV  + K+   +      Q+ ++ G++ 
Sbjct: 250 ILDNRFQKIAFMLNFILKYPEEKTILFLNTCASVDFYQKIFKMYSLIKKIQITSVHGQMK 309

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R+  ++     +  V I TDV ARGID  D+  ++  +   +P   +HR GRT R G
Sbjct: 310 QVKRNKIIENFTKSQKGVLICTDVVARGIDFQDVHHILQIDPPQDPSFYIHRIGRTARKG 369

Query: 340 RKG 342
           + G
Sbjct: 370 KSG 372


>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 443

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 188/340 (55%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL++ G V  T +Q++ +   L  +DV   ++TGSGKT+A+ L +    L + DR    
Sbjct: 21  EALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAYLLPV----LQKIDRNKRE 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +  L L   PT ELA+QV R+++ L  +    +  A  IG V++ R+   L+   HI+VG
Sbjct: 77  NQVLVLT--PTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHIIVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           + GR+ + I+ + ++   LK +VLDEAD++LD      ++ +L ++ K  ++L+FSAT+S
Sbjct: 135 SAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSATLS 194

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                 A  + KD     I  +      I ++  +    D+   +  ++R+     A++F
Sbjct: 195 QDAIEQAAGFLKDPAVQRITMKATVVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRALIF 254

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +    + +  + L+ H    VA+SG   ++ R  A+   R G+ ++ +A+D+AARG+D+
Sbjct: 255 INKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARGLDI 314

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++  + + ++   P+  LHR GRTGRAG+ G++V ++ Q
Sbjct: 315 KNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQ 354


>gi|229368775|gb|ACQ63054.1| DEAD box polypeptide 18 (predicted) [Dasypus novemcinctus]
          Length = 670

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 201/360 (55%), Gaps = 14/360 (3%)

Query: 4   FENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++  ++ E    A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + 
Sbjct: 179 FTSLANLVNENTLKAIKEMGFTHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF--LIP 236

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +  L    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E +
Sbjct: 237 AVELIYKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAEAQ 296

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L NG +I+V TPGRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P 
Sbjct: 297 KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPV 356

Query: 179 KRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   +
Sbjct: 357 RRQTMLFSATQTRKVEDLARISLKKEPLYVGV-DDDKTNATVDGLEQGYVVCPSEKRFLL 415

Query: 236 V-NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R++      +  
Sbjct: 416 LFTFLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVLAIHGRQKQNKRTSTFFQFCNAD 475

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 476 SGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|227503665|ref|ZP_03933714.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
 gi|227075701|gb|EEI13664.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
          Length = 435

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/361 (31%), Positives = 172/361 (47%), Gaps = 3/361 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +PQ +   L+++G      +Q A +   L  KDVL    TGSGKT  FGL   + L   
Sbjct: 8   GLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPTLARLAGS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P A+ +APTRELA Q+ + L+      G+ V   +GGV+++   R L    
Sbjct: 68  G--ASTPGHPRAVVLAPTRELATQIQQRLDEPATALGLRVLAVVGGVNINHHIRSLARPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR  D I    L+   ++   LDEAD+M D+GF   +  +L+ +P   + L+F
Sbjct: 126 DLLVATPGRAQDLIAQGRLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPPTGQRLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  + A        + +    V      N +V  +     K
Sbjct: 186 SATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMRIAARAGK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R  K L         L G+  Q  R+ A+    D    V +ATD+AA
Sbjct: 246 T-IMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADRSIPVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +     L ++A V
Sbjct: 305 RGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAALIKKAGV 364

Query: 366 S 366
           +
Sbjct: 365 N 365


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 178/347 (51%), Gaps = 19/347 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  Y   T +Q   +   L  +D++  A TGSGKT AF L L    L +  +  P + 
Sbjct: 31  LTELEYQQPTPIQAKAIPSVLAGRDLIAGANTGSGKTAAFALPL----LQQFGQHLPINK 86

Query: 75  PLA-----------LAIAPTRELAVQVGRELEWLYAK-TGVVVAVCI-GGVSVHRERRDL 121
            L+           L + PTRELA QV   ++   A   G +  V + GGVS + +   L
Sbjct: 87  TLSSKNREGNYVAGLILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFGGVSANTQMLAL 146

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D I    + +  +K +VLDEAD ML LGF D++  +L   P  ++
Sbjct: 147 RGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLALLPSSKQ 206

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +  L +    D V + + S +   S +  R   V    +   + ++++ 
Sbjct: 207 ILLFSATFPEQVQALTQELLNDPVEIQLQSSDA--STLVQRVFTVNKGQKTALLAHLIKQ 264

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  + A++F + + S +   + L++         G+  Q  RS  L   + G   V IAT
Sbjct: 265 HQWQQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRVLDAFKAGEIDVLIAT 324

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I
Sbjct: 325 DIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLI 371


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 212

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 213 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 272

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 273 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 332

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 333 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 390

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 391 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 450

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 451 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 483


>gi|71021007|ref|XP_760734.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
 gi|46100328|gb|EAK85561.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
          Length = 645

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 185/362 (51%), Gaps = 16/362 (4%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ + + L +++  V  + +Q   L      +D++  A TGSGKT+AF L +   L AE
Sbjct: 216 VPECVIDYLKTQKKIVKPSPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFSLPIL-MLAAE 274

Query: 66  NDR---FSPASAPLALAIAPTRELAVQVGRELEWL--------YAKTGVVVAVCIGGVSV 114
            +R   F+    P+ + + P+RELA Q    ++ L        Y + GV++  CIGG+S+
Sbjct: 275 EERRLPFTRGEGPVGMIVCPSRELARQTYESIKGLAEALVQGGYPQIGVLL--CIGGISM 332

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   +  G HIVV TPGRL D +  K   +   K + LDEAD M+D+GF +D+  I+ 
Sbjct: 333 AEQHHTMSKGFHIVVATPGRLQDMLTKKKFTLDCCKYLCLDEADRMIDMGFEEDVRNIMG 392

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              ++R+ L+FSAT+   I   A+      V +N+        DI      V    +   
Sbjct: 393 FFKQQRQTLLFSATMPKKIQDFAEQSLIRPVIINVGRAGAASLDIIQEVEYVKQEAKMVY 452

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L+   A   I+F   +  V    + L     + VA+ G  +Q ER  A++  + G+
Sbjct: 453 LLECLQ-KTAPPVIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQDEREYAIRAFKSGQ 511

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +A+ VA++G+D  +++ VI+  +    E+ +H+ GRTGR+G+ G++   +  N Q 
Sbjct: 512 KDVMVASGVASKGLDFSEIQHVINYTMPKEIEDYVHQIGRTGRSGKTGIATTFVNANTQE 571

Query: 355 RA 356
           + 
Sbjct: 572 QT 573


>gi|167755660|ref|ZP_02427787.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
 gi|167704599|gb|EDS19178.1| hypothetical protein CLORAM_01175 [Clostridium ramosum DSM 1402]
          Length = 456

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 174/335 (51%), Gaps = 12/335 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   TS+QE ++    +  D++  +QTG+GKT AF       LL   DR  P 
Sbjct: 15  QTIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAF-------LLPVMDRIDPK 67

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +  + A+  APTRELA Q+    + L+ K  + + V++ +GG    +    L    H+V+
Sbjct: 68  NNSVQAVITAPTRELATQIYNNAK-LFTKYNSEIKVSLIVGGNDRQKTVNKLAVQPHVVI 126

Query: 130 GTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+ D  +  + L I+     ++DEAD  L+ G+ +DI+ +        RM++FSAT
Sbjct: 127 GTPGRIKDLSLDEQALKITTASTFIVDEADMTLEFGYLEDIDAVAGKMRDDLRMMVFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +    K Y K  V V I  +     ++++  +     +R   +  I+        I
Sbjct: 187 IPQMLRPFLKKYMKSPVLVEIDDDKVTTENVEHILIATKHKNRYEVLKKIIESIDPYVCI 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +TR+ V+  TK L E  F+V  + G+L  +ER   ++ +++   +  +ATD+AARGI
Sbjct: 247 IFANTRSDVASTTKKLREDGFKVGEIHGDLEPRERKQMMRRIQNNEYQFIVATDIAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           D+  +  VI+ E    P+  +HRSGR GR    G+
Sbjct: 307 DIDGVSHVINMEFPKEPDFYIHRSGRCGRGNYTGI 341


>gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185]
 gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223]
 gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 419

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 174/335 (51%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     L+    RF  A
Sbjct: 14  ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLIDFPRRF--A 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+ R    L    G+ +A+  GGV    +   L     I+V TP
Sbjct: 72  GQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEALAGNVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++ ++FSAT+   
Sbjct: 132 GRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNMLFSATLEGG 191

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +   A+    D + +++ +   + + I     L    +   A++ ++LR    K  IVF
Sbjct: 192 GVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLLRQEDVKRTIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  VS     L +       + G++ Q++R  AL     G   V +ATDVAARGID+
Sbjct: 252 VKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 312 DDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|70826664|gb|AAZ13600.1| eukaryotic initiation factor 4A-like protein [Plasmodium
           falciparum]
          Length = 670

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------------- 63
            Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L               
Sbjct: 110 NYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 169

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             N  F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  
Sbjct: 170 TSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDK 229

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--------- 174
           GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I  I++         
Sbjct: 230 GADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDN 289

Query: 175 ----SSPK-----------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
               S  K           KR+ +MFSAT    I  LAK Y      + +      +  I
Sbjct: 290 DVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYI 349

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               V V   ++ N ++N+L  +     I+F  T+       + L+      V + G+ S
Sbjct: 350 KQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKS 409

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG
Sbjct: 410 QDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAG 469

Query: 340 RKGMSV 345
             G++ 
Sbjct: 470 NIGIAT 475


>gi|302410479|ref|XP_003003073.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
 gi|261358097|gb|EEY20525.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
          Length = 577

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 193/400 (48%), Gaps = 44/400 (11%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+
Sbjct: 141 NFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ 200

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               +P   P+ L +APTRELAVQ+ +E+   + K+  +   C+ GGV    + RDL  G
Sbjct: 201 -PLLAPGDGPIVLVLAPTRELAVQIQQEIA-KFGKSSRIRNTCVYGGVPKGPQIRDLSRG 258

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      ++ +M
Sbjct: 259 VEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDKQTVM 318

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +SAT    +  LA ++  D ++VNI S +    H       V+     RD  I ++ +  
Sbjct: 319 WSATWPKEVRALASDFLDDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIKHLEKAM 378

Query: 243 GAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             K   A+VF  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +A
Sbjct: 379 ENKENKALVFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVA 438

Query: 301 TDVAARGI----------------------------------DLPDLELVIHAELSSNPE 326
           TDVA+RGI                                  D+ ++  VI+ +  +N E
Sbjct: 439 TDVASRGIVKDTARCIRLSSPVPCWNVATQTPVTRMLTRLPQDVRNITHVINYDYPNNSE 498

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREA 363
           + +HR GRTGRAG  G ++ +   +  ++A  L    REA
Sbjct: 499 DYIHRIGRTGRAGATGTAITLFTTDNSKQARDLVNVLREA 538


>gi|71744488|ref|XP_803774.1| eukaryotic initiation factor 4a [Trypanosoma brucei TREU927]
 gi|122112495|sp|Q38F76|IF4A_TRYBB RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|70831039|gb|EAN76544.1| eukaryotic initiation factor 4a, putative [Trypanosoma brucei]
 gi|261331185|emb|CBH14174.1| eukaryotic initiation factor 4a, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 404

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 12/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L   +    A  +GG  V  +
Sbjct: 88  LDFRHNVLQ------GLVLSPTRELAMQTAEVITRIGEFLAEGSSSFCATFVGGTRVQDD 141

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ+G  + VGTPGR+ D  +   +    L+ +VLDEADEML  GF + I  I    P
Sbjct: 142 YRKLQSGTIVAVGTPGRVVDVTKRGAMRTESLRVLVLDEADEMLSQGFAEQIYDIFRFLP 201

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++ +FSAT+   +  L K + +D  R+ +  E+     I    + V    + + +++
Sbjct: 202 KEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V      L      V  +  E+S+QER   +   R+G +RV
Sbjct: 262 LYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N EN LH
Sbjct: 322 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 354


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P   V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S 
Sbjct: 162 FTNPPINPVLLENVKYARYTTPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPILSA 221

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           L        P                P AL +APTREL  Q+  E      ++ V  AV 
Sbjct: 222 LFTYGPSAPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVV 281

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R L  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   
Sbjct: 282 YGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQ 341

Query: 169 IEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I+D         R+ LMFSAT    I  LA+++ K+ + + +        +I  R  
Sbjct: 342 IRRIVDEEDMPGVLDRQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVE 401

Query: 225 LVALSDRDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + ++++L    +   I VF  T+         L        ++ G+ +Q+ER
Sbjct: 402 YVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQRER 461

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL   + GRA + +AT VAARG+D+P++  VI  +L ++     HR GRTGRAG  G 
Sbjct: 462 EAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGT 521

Query: 344 SVFVIPQ---NMQRRAERLFREANVSV 367
           S     +   N+ +    L +EAN  V
Sbjct: 522 STAFFNRGNSNIGKDLIELLKEANQEV 548


>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 399

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 183/349 (52%), Gaps = 5/349 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+ E GY   T +Q   +   L  +D+L +AQTG+GKT +F L +   L A  
Sbjct: 8   LEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPILQKLNAGQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +    +   AL + PTRELA+QV  +++  Y K   + ++ + GGV    +++ L +G 
Sbjct: 68  TQKKKRAR--ALILTPTRELALQVEEKIQS-YGKYLSLKSIALYGGVDDKAQKQALIDGI 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + +    ++ +VLDEAD+MLD+GF + I  ILD  P+  + L+F
Sbjct: 125 DIVVATPGRLLDLYGKRAIYFEEIEILVLDEADKMLDMGFIEGINKILDRLPRDIQNLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK    +   ++IA+      +I+   + V    +   + ++++++   
Sbjct: 185 SATLSNKVRDLAKTAVYNPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLIQHNNWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+   ++    L +      A     SQ  RS  L   + G  +  IAT V A
Sbjct: 245 QALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLLDDFKSGEIKYLIATGVGA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           RGID+  L  VI+ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 305 RGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFK 353


>gi|74187323|dbj|BAE22641.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            AR ID+  + LVI+ +L +N EN +H
Sbjct: 332 LARSIDVQQVSLVINYDLPTNRENYIH 358


>gi|317143933|ref|XP_001819794.2| ATP-dependent RNA helicase dbp8 [Aspergillus oryzae RIB40]
          Length = 523

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 194/361 (53%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q+A +   L+ +D +  ++TGSGKT+AF + +        D
Sbjct: 102 PWLVG-SLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKW--AQD 158

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 159 PF----GIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHV 214

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK-- 178
           V+ TPGRL DHI   G      +  ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 215 VIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSS 274

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQ--HSDIDYRAVLVALSDRD 232
           +R+ L+F+AT++P   A+ ++ +   K  V V  I++EN       +    + V ++ R+
Sbjct: 275 ERQTLLFTATLTPEVRALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVPMTHRE 334

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     +  K AI+FC+   +     ++L     +V +L   L Q ER++ L  
Sbjct: 335 -AFLHVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNSNLAR 393

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVA+RG+D+P + LVI+ ++  NP++ +HR GRT RAGR G +V ++ 
Sbjct: 394 FRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAVTLVG 453

Query: 350 Q 350
           Q
Sbjct: 454 Q 454


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 196/365 (53%), Gaps = 12/365 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   + + T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 161 NLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILERLL-- 218

Query: 66  NDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P    S    L + PTREL VQV +  + L   T + + + +GG+ V  +   L+
Sbjct: 219 ---YKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLR 275

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH++   G ++  ++ +VLDEAD MLD  F + ++ I+    + R+
Sbjct: 276 KQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQ 335

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNI 238
            ++FSAT++ A+  LA     + V++ + S     +++    + +      D++  +  +
Sbjct: 336 TMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAAL 395

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R     N I+F +T++   +   +L     +   L G L Q ER + L+  ++G   + 
Sbjct: 396 VRRTFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDIL 455

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+ +L    E+ +HR GRT RAGR G+SV +  ++ ++  + 
Sbjct: 456 VATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKE 515

Query: 359 LFREA 363
           + ++A
Sbjct: 516 IVKKA 520


>gi|170050080|ref|XP_001859201.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167871660|gb|EDS35043.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 600

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 180/331 (54%), Gaps = 8/331 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF   + +  L    +F P 
Sbjct: 120 KAITEMGFTKMTEIQAKAIPPLLAGRDLIGSAKTGSGKTLAF--LIPAVELIYKLQFKPR 177

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L I+PTRELA+Q+   L+ L A       + +GG S H E   L  G +I+V TP
Sbjct: 178 NGTGVLVISPTRELAMQIFGVLKELSAHHHYTYGLLMGGASRHTENEKLSKGLNIIVATP 237

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++G       +L+ +++DE D +L++GF +D++ I+   PKKR+ ++FSAT + 
Sbjct: 238 GRLLDHLKGTPNFLFKNLQCLIIDECDRILEIGFEEDMKQIISILPKKRQTMLFSATQTS 297

Query: 192 AITTLAK-NYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               L K   + + + V +     +   S ++   ++     R   +   L+ +  K  +
Sbjct: 298 RTEELGKLALKSEPIYVGVDDNKTEATVSGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 357

Query: 249 VFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           VF S+  SV +F   L  ++   V ++ G+  Q +R++      +  + + + TDVAARG
Sbjct: 358 VFFSSCLSV-KFHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARG 416

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +D+P ++ ++  +  ++ +  +HR GRT R 
Sbjct: 417 LDIPAVDWIVQYDPPNDTKEYIHRVGRTARG 447


>gi|325191253|emb|CCA26039.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 563

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 189/345 (54%), Gaps = 13/345 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +    ALSE G+  +T +Q   + P L   D++ +A+TGSGKT++F +     
Sbjct: 73  FHSLPLSEPTQRALSEMGFEKMTKIQAKSIAPLLSGHDLIAAAKTGSGKTLSFLIPTIEL 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L   N  F+P      + I+PTRELA+Q   V R+L   +++T  ++   +GG +   E 
Sbjct: 133 LHKVN--FNPRRGAGCIIISPTRELALQIYGVVRDLCRYHSQTHGII---MGGANRGAEA 187

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G +I+V TPGRL DH++  KG  + +L+ +V+DEAD +L +GF +++  I+   P
Sbjct: 188 ERLSKGVNILVSTPGRLLDHLQNTKGFLVHNLQILVIDEADRILSIGFEEEMRQIIKCIP 247

Query: 178 KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASE-NRQHSDIDYRAVLVALSDRDNAI 235
           K+R+ ++FSAT +  +  LA+ + ++  + V I  E N   S ++   V+     R   +
Sbjct: 248 KERQTMLFSATQTKKVQDLARLSIREKPIYVGIEDEVNATVSSLEQGYVVTPSDKRFLLL 307

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ + +K  +VF S  A+V  + ++L      V+ + G+  Q +R+       + + 
Sbjct: 308 FTFLKKNLSKKVMVFFSACATVKFYGELLNYIDIPVMDIHGKQKQTKRTTTFFQFCNAKT 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            + + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R   
Sbjct: 368 GILLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGAH 412


>gi|126664017|ref|ZP_01735011.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623966|gb|EAZ94660.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 197/388 (50%), Gaps = 14/388 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  ++P+ + +AL E G+V+ T +QE   +  L  +D++  AQTG+GKT A+ L +
Sbjct: 1   MKTFQEFDLPKSLQKALDELGFVHATPIQEKSHSVILSGRDMMGIAQTGTGKTFAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +N+     SA + + + PTREL VQV  E+E L     V      GGV+++ +R
Sbjct: 61  LKQWKFQNNE----SARIVI-LVPTRELVVQVAEEVEKLTKYMSVRTLGIYGGVNINTQR 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+VGTPGR+ D      L    L+ +V+DE DE+L+LGFR  +  IL     
Sbjct: 116 KALAQGVDILVGTPGRVMDLGLDGVLRFDELQKLVIDEFDEILNLGFRTQLTSILSMMRG 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVN 237
           K++ ++FSAT++  +  +   Y +    V++A        I+     V     + N + +
Sbjct: 176 KKQNILFSATMTEEVDAMLDEYFEFPEEVSLAQSGTPLEQIEQIVYKVPNFLTKLNMLKH 235

Query: 238 ILR-YHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
           ++R     +  ++F + +  V    + L E    Q   +    SQ  R N +   + G  
Sbjct: 236 LVRETETMERVLIFVNNKRIVDLVFETLDEEFPGQFGVIHSNKSQNYRLNTMASFQAGEL 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR 354
           R  + TD+ ARG+D+ D+  VI+ + +  PE  +HR GRTGRA + G+++  V P  ++ 
Sbjct: 296 RGLVTTDIMARGLDISDITHVINLQFTEEPEKYMHRIGRTGRADKTGIAISLVSPSEVES 355

Query: 355 RAE-RLFREANVSVVWEPAPSVEAIRER 381
           + E  L  +  +     P P    I ER
Sbjct: 356 KIEVELLMDTKIKEF--PLPEDLKIEER 381


>gi|185132644|ref|NP_001117993.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
 gi|52547136|gb|AAU81664.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
          Length = 663

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 188/331 (56%), Gaps = 8/331 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF   + S  L    +F P 
Sbjct: 184 KGVKEMGFEHMTEIQHKSIQPLLEGRDILAAAKTGSGKTLAF--LIPSIELIYKLKFMPR 241

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTRELA+Q    ++ L         + +GG +   E + L NG +I+V TP
Sbjct: 242 NGTGVVILSPTRELAMQTYGVMKELMTHHVHTFGLIMGGSNRTAEAQRLANGVNILVATP 301

Query: 133 GRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 302 GRLLDHLQNAAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKRRQTMLFSATQTR 361

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            +  LA+ + +K+ + V +  +N+ ++ +D   +  +V  S+ R   +   L+ +  K  
Sbjct: 362 KVEDLARISLKKEPLYVGV-DDNKDNATVDGLEQGYVVCPSEKRFMLLFTFLKKNRKKKL 420

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 421 MVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARG 480

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +D+P+++ ++  +   +P+  +HR GRT R 
Sbjct: 481 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARG 511


>gi|12860207|dbj|BAB31877.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 196/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + +   ++    +F P 
Sbjct: 182 KAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPR 239

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 240 NGTGVLILSPTRELAMQTFDVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATP 299

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 300 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 359

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 360 KVEDLARISLKKEPLYVGV-DDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 419 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 478

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 479 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 525


>gi|71666845|ref|XP_820378.1| eukaryotic initiation factor 4a [Trypanosoma cruzi strain CL
           Brener]
 gi|122045930|sp|Q4E162|IF4A_TRYCR RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|70885719|gb|EAN98527.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 404

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 172/333 (51%), Gaps = 12/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L        A  +GG  V  +
Sbjct: 88  LDFRHNVLQ------GLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDD 141

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G+ + VGTPGR+ D  +   +   HL+ +VLDEADEML  GF + I  I    P
Sbjct: 142 YRKLQAGSIVAVGTPGRVVDVTKRGAMRTEHLRVLVLDEADEMLSQGFAEQIYEIFRYLP 201

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++ +FSAT+   +  L K + +D  R+ +  E+     I    + V    + + +++
Sbjct: 202 KEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVEEEHKLDTLMD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V  +  E+ +Q+R   +   R+G +RV
Sbjct: 262 LYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N E+ LH
Sbjct: 322 LVTTDLVARGIDVHHVNIVINFDLPTNKESYLH 354


>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
 gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
          Length = 674

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 19/378 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + +    Y   T +Q   +   +  +DV+  A+TGSGKT+AF + L   +  + 
Sbjct: 87  LPASCLDVIKRLNYTAPTPIQAQAVPAIMSGRDVIGVAKTGSGKTIAFLIPLFRHI-KDQ 145

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
               P   P+AL + PTRELA Q+ RE +  + K   + AVC  GG  +  +  DL+ GA
Sbjct: 146 RPLEPMEGPIALVMTPTRELATQIHRECKP-FLKVLNLRAVCAYGGSPIKDQIADLKKGA 204

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+V TPGR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ 
Sbjct: 205 EIIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQT 264

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT    + +LA+   K  + + +   +   ++I+    +V + + D   + +L   
Sbjct: 265 VLFSATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQ---IVEVREEDTKFMRLLEIL 321

Query: 243 GAK-------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           G           ++F     +     + L    +  ++L G   Q +R   +   + G  
Sbjct: 322 GQMYNEDPDCRTLIFVDRHEAADNLLRELMRKGYLCMSLHGGREQVDRDATIADFKAGVV 381

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IAT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R 
Sbjct: 382 PIVIATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFIEPEQERY 441

Query: 356 AERLFR---EANVSVVWE 370
           +  ++R    +N SV  E
Sbjct: 442 SVDIYRALKASNASVPKE 459


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 194/388 (50%), Gaps = 19/388 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQE----AILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           ++P  + + +   G+   + +Q     AI +P  R   V+  AQ+G+GKT AF + + S 
Sbjct: 97  DLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRH--VIAQAQSGTGKTGAFSIGVLSK 154

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVS-VHRERR 119
           +              AL +APTRELA Q+    + + ++  G+ +A+ IGG   V   + 
Sbjct: 155 IDVSQ------KTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQA 208

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              +  HI + TPGR  D I    L + + K  VLDEAD+ML   F + +  I++  P+ 
Sbjct: 209 RAASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPED 268

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++L+FSATIS +I  +   +  D  R+ I  E      I  +   V + +  N    +L
Sbjct: 269 VQILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGI--KQFYVDVQETSNKFDCLL 326

Query: 240 RYHGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +G+   + AI+F +++ +V   ++ L +H F V  +   L Q ER   ++  R G AR
Sbjct: 327 DIYGSVSIQKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTAR 386

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I+TD+ ARGID+  + LVI+ EL    E  +HR GR+GR GRKG+++ +         
Sbjct: 387 VLISTDLLARGIDVQQVTLVINFELPKKLEQYIHRIGRSGRYGRKGVAINICDHEDMNVI 446

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
           E L      ++   P+     + E +AQ
Sbjct: 447 EMLKNHYMTTINELPSDIERVVNEANAQ 474


>gi|237734407|ref|ZP_04564888.1| helicase [Mollicutes bacterium D7]
 gi|229382637|gb|EEO32728.1| helicase [Coprobacillus sp. D7]
          Length = 448

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 174/335 (51%), Gaps = 12/335 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+   TS+QE ++    +  D++  +QTG+GKT AF       LL   DR  P 
Sbjct: 7   QTIEELGFQKPTSIQEQVIPLVYKNSDIIGISQTGTGKTHAF-------LLPVMDRIDPK 59

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +  + A+  APTRELA Q+    + L+ K  + + V++ +GG    +    L    H+V+
Sbjct: 60  NNSVQAVITAPTRELATQIYNNAK-LFTKYNSEIKVSLIVGGNDRQKTVNKLAVQPHVVI 118

Query: 130 GTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+ D  +  + L I+     ++DEAD  L+ G+ +DI+ +        RM++FSAT
Sbjct: 119 GTPGRIKDLSLDEQALKITTASTFIVDEADMTLEFGYLEDIDAVAGKMRDDLRMMVFSAT 178

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +    K Y K  V V I  +     ++++  +     +R   +  I+        I
Sbjct: 179 IPQMLRPFLKKYMKSPVLVEIDDDKVTTENVEHILIATKHKNRYEVLKKIIESIDPYVCI 238

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +TR+ V+  TK L E  F+V  + G+L  +ER   ++ +++   +  +ATD+AARGI
Sbjct: 239 IFANTRSDVASTTKKLREDGFKVGEIHGDLEPRERKQMMRRIQNNEYQFIVATDIAARGI 298

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           D+  +  VI+ E    P+  +HRSGR GR    G+
Sbjct: 299 DIDGVSHVINMEFPKEPDFYIHRSGRCGRGNYTGI 333


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 174/334 (52%), Gaps = 7/334 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D +V A+TGSGKT+A+ + L   ++A+    S    P+ +  AP RELA Q+  E+    
Sbjct: 93  DAIVCAKTGSGKTLAYTIPLIKHVMAQRP-LSKGEGPIGIVFAPIRELAEQINTEINKFG 151

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLD 155
               +      GG  +  +   L+ G  IVV TPGR+ D +    G+  N+  +  VVLD
Sbjct: 152 KYLNIRSVAVFGGTGISNQIGALKRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLD 211

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD M D+GF   I+ I++     ++++MFSAT   ++   A+ + K  + +     ++ 
Sbjct: 212 EADRMFDMGFGPQIKRIIEGIRPDKQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQV 271

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVA 273
            + I+    ++ +  +   +++I+     K    I+F  T+ +     + L E     + 
Sbjct: 272 SNTIEQIVEVIEIKKKIARLISIVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLL 331

Query: 274 LSGELSQQERSNALQMMRDGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           L G + Q +R N +Q  + G  R + I T + ARG+D+  LELVI+ +  ++ E+ +HR 
Sbjct: 332 LHGGIDQIDRQNTIQEFKSGIGRTILITTSLCARGLDIKGLELVINYDCPNHLEDYVHRV 391

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GRTGRAG++G ++  I +  ++ +E + +   +S
Sbjct: 392 GRTGRAGKRGKAITFITKEEEKYSEDIVKALTLS 425


>gi|27545209|ref|NP_775336.1| ATP-dependent RNA helicase DDX55 [Danio rerio]
 gi|21105407|gb|AAM34647.1|AF506203_1 ATP-dependent RNA helicase [Danio rerio]
          Length = 593

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 32/371 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K+ +NI Q     L E G+  +T VQ A +   +  KDV   A TGSGKT+AF +    
Sbjct: 14  VKLHDNILQT----LKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALE 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHR 116
            LL   ++        AL I PTRELA+Q+    GR L+     T +++   IGG +   
Sbjct: 70  ILLKREEKLKKMQVG-ALIITPTRELAMQISEVMGRFLQGFPQFTQILL---IGGSNPIE 125

Query: 117 ERRDLQN-GAHIVVGTPGRLCDHIRGK--GLNIS----HLKAVVLDEADEMLDLGFRDDI 169
           +   L+  GA+I++ TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   +
Sbjct: 126 DVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASL 185

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYR 222
             IL   PK+RR  +FSAT +  +  L +   ++ VR+ +       +S  +  + +   
Sbjct: 186 NTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNY 245

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA---LSGELS 279
             +    ++ N +V  LR H  +  +VF ST A V  F K L E L + V+   + G++ 
Sbjct: 246 YTMCRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKAL-EVLVKNVSIHCIHGKM- 303

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           + +R+      R  ++ + + TDV ARGID+P++  V+  +  S+  + +HR GRT R G
Sbjct: 304 KHKRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIG 363

Query: 340 RKGMS-VFVIP 349
            +G + VF++P
Sbjct: 364 NQGNALVFLLP 374


>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 456

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 187/375 (49%), Gaps = 35/375 (9%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G    T++Q       L  +D++  A+TGSGKT+AF L +   ++ + +     
Sbjct: 75  QTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRE-LQRG 133

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+AL +APTRELA Q   + +   A  G   A   GG     + + L+ G  +VV TP
Sbjct: 134 EGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATP 193

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL + IR K   ++ +  VVLDEAD M ++GF   +  ++      R++LMFSAT    
Sbjct: 194 GRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQILMFSATFRRR 253

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK------- 245
           I TLA +   + V++ +    + + DI   AV             +L  HGAK       
Sbjct: 254 IETLALDVLTNPVKLTVGQIGQANEDIRQIAV-------------VLPGHGAKWPWLMSK 300

Query: 246 --------NAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
                     ++F  ++A      K LA        + L G+ +QQER+ AL   + G  
Sbjct: 301 IRSLVDEGRLLIFAGSKAGCEELAKNLAVAFPAAPALCLHGDKTQQERAEALTKFKHGAC 360

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM----SVFVIPQN 351
           RV +ATDVAARG+D+ D++ V++ +++ + +  +HR GRTGR G +G     +  ++ +N
Sbjct: 361 RVLVATDVAARGLDVKDVKNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVTRN 420

Query: 352 MQRRAERLFREANVS 366
             + A +L    +VS
Sbjct: 421 ESQFAAQLVYNMDVS 435


>gi|302835930|ref|XP_002949526.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
 gi|300265353|gb|EFJ49545.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 189/385 (49%), Gaps = 20/385 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L +RG+     +Q   L   +  +D +  A+TGSGKT+AF L +   +  +       
Sbjct: 86  EVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTMAFVLPMMRHI-KDQPPLQQG 144

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P++L IAPTREL  Q+ +E +      G+      GG  V  +  +L+ G  IV  TP
Sbjct: 145 DGPVSLVIAPTRELVAQIAKEAKAFGKPLGLNALAVFGGSGVANQISELKRGVEIVACTP 204

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    GK  N+  +  +VLDEAD M D+GF   I  I+ +    R+ +MFSAT 
Sbjct: 205 GRMIDLLVTSNGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVMFSATF 264

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
              +  LA+    D V + +   +  + +I     +    +R + ++ IL  ++     +
Sbjct: 265 PRQVEVLARKILTDPVEIQVGGRSIVNENITQFVEIRPEKERFHRLLEILGEWYERGKLL 324

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   + S     + L  + +  ++L G   Q +R + +   +     + +AT +AARG+
Sbjct: 325 IFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNILVATSIAARGL 384

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANV 365
           D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG ++  I  + +R A  L    RE+  
Sbjct: 385 DVKDLVLVVNYDVPNHHEDYVHRVGRTGRAGAKGTAITFIGPDEERYAPDLVKALRESGA 444

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP 390
           ++             +D QRI+  P
Sbjct: 445 AI------------PQDLQRIMCCP 457


>gi|260578688|ref|ZP_05846596.1| ATP-dependent RNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258603185|gb|EEW16454.1| ATP-dependent RNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 382

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 168/344 (48%), Gaps = 12/344 (3%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DVL    TGSGKT  FGL +   L       S    P  + + PTRELA QV   L+ +
Sbjct: 42  RDVLGRGPTGSGKTFTFGLPMIQRL---RRGASKPKKPRGVVLVPTRELATQVRSRLDPI 98

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
               G  +   +GGV + R    L     I+V TPGR  D +    L+ S +K V +DEA
Sbjct: 99  ANAAGQRLLEVVGGVKIQRNITALARPVDILVATPGRALDLLGQGMLDFSEVKTVAIDEA 158

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D+M D+GF   +  +LD  PK+ + L+FSAT+   +  L   Y +D V     S     +
Sbjct: 159 DQMADMGFLPQVTKLLDRMPKQAQHLLFSATLDGDVQVLVDKYMRDPV---THSTGEATA 215

Query: 218 DIDYRAVLVAL----SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
            +D    L+ +     +R+  +V I +    K  ++F  T+ +V R  K L       V 
Sbjct: 216 SVDTMRHLLGVVESHEERNELVVAIGKLR--KRTVMFMRTKYAVDRQVKKLVRAGVPAVG 273

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G   Q  R  AL+    G+  V +ATD+AARGID+ D+ELV+H +  +  +  +HR+G
Sbjct: 274 IHGNKGQNTRQAALEGFTQGKNTVLVATDIAARGIDVKDVELVVHIDPPAEHKAYVHRAG 333

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           RT RAG  G  V +   + Q   +++  +A V     P   + A
Sbjct: 334 RTARAGASGTVVTLSYADQQADTKKMMAKAGVHPTVLPGAKLVA 377


>gi|163789073|ref|ZP_02183517.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875737|gb|EDP69797.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/358 (30%), Positives = 182/358 (50%), Gaps = 10/358 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL + G+   T +Q    N     KDV+  AQTG+GKT+A+ L +   L   
Sbjct: 7   NLNTPLYNALDDLGFDTPTPIQAQSFNVVASGKDVVGIAQTGTGKTLAYMLPILRNL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV  E+E         V    GG +++ +++ +  G 
Sbjct: 64  --KYSRQDNPRVLVLVPTRELVVQVVSEIEKFSKYINNRVLGVYGGTNINTQKQAVAQGQ 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + L +  ++ +V+DE D MLDLGFR  +  I D  P +R+ +MF
Sbjct: 122 DIIVATPGRLYDLAVSRVLQLKSIQKLVIDEVDVMLDLGFRHQLMNIFDILPPRRQNIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILR-YHG 243
           SAT++  +  L  ++  +  +++IA       +I   R  +     + N +  +L   + 
Sbjct: 182 SATMTKDVDELITDFFINPTKISIAVSGTPLENIKQIRYDVPNFYTKVNLLEELLHDTNE 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               ++F + +    R    L E +F  Q   +    +Q  R  +++  R G  R+ +AT
Sbjct: 242 FSKVLIFVAYKRMADRLFDKL-EDIFPGQSCVIHSNKTQNYRLRSIEQFRAGEHRLLVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DV ARG+D+ ++  VI+ + +  PEN +HR GRTGRA ++G ++    +  Q   ER+
Sbjct: 301 DVMARGLDIDNITHVINFDTTDYPENYMHRIGRTGRAEKQGRTILFSTEAEQDARERI 358


>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 397

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 177/345 (51%), Gaps = 3/345 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L     + 
Sbjct: 11  VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQT 68

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  ++V
Sbjct: 69  QRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FSAT+
Sbjct: 129 ATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       A++
Sbjct: 189 SRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R+  L+  +  + +  +AT VAARGID
Sbjct: 249 FIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSAKIKYLVATGVAARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  V++ +L    +  +HR GRTGRA   G ++ FV   N +
Sbjct: 309 IDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 9/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQV+ + L    +   T +Q       L  +D++  A+TGSGKT AF L      + + 
Sbjct: 136 FPQVLTDMLFA-NFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIVHTINQP 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    S P  L + PTRELA QV    +     T + +    GG     + RDL+ G  
Sbjct: 195 PRGHQKS-PSVLVLLPTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARDLERGVD 253

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +     ++     +VLDEAD MLD+GF   I  ++      R+ LMFS
Sbjct: 254 IIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDRQTLMFS 313

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++  DA  +N+ S E   + +I     ++  S++   ++ IL     K
Sbjct: 314 ATWPKDVRKLAMDFLTDAAHLNVGSLELSANHNITQIVEIIDESNKQQRLMAILSDIMNK 373

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+  Q ER  AL   R G+  + +ATD
Sbjct: 374 EDCKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATD 433

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RL 359
           VAARG+D+ D++ VI+ + S+N E+ +HR GRTGR  + G++  F    N  +  +  ++
Sbjct: 434 VAARGLDVDDIKYVINFDYSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAPKAKDLIKV 493

Query: 360 FREANVSV 367
             EAN S+
Sbjct: 494 LEEANQSI 501


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E      R+R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFEAHQRKREMERKMERP------QGRPKKF 647


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 181/347 (52%), Gaps = 6/347 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +DV+  A+TGSGKT+AF L +   +L + +       P+A+ 
Sbjct: 324 YKKPTPIQCQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRHILDQPE-LEEMDGPIAVI 382

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q  +E      +  V VA   GGV +  +  DL+ GA +VV T GRL D +
Sbjct: 383 MSPTRELAMQTWKEANKFAKQLNVRVACVYGGVGISDQIGDLKRGAEVVVCTVGRLTDML 442

Query: 140 ---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
              +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT    +  L
Sbjct: 443 AANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEAL 502

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRA 255
           A+      + + +  ++    D++   V++    +   ++ +L  Y    N +VF   + 
Sbjct: 503 ARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGNVLVFVDKQE 562

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L    +    L G + Q +R + +   + G+ ++ +AT VAARG+D+  L L
Sbjct: 563 KADDLVAQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAARGLDIKKLIL 622

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFR 361
           V++ +  ++ E+ +HR GRTGRAG KG +  F++P   +R A  + R
Sbjct: 623 VVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQERMAGEVCR 669


>gi|146345411|sp|Q8JHJ2|DDX55_DANRE RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
           box protein 55
          Length = 593

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 32/371 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K+ +NI Q     L E G+  +T VQ A +   +  KDV   A TGSGKT+AF +    
Sbjct: 14  VKLHDNILQT----LKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALE 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHR 116
            LL   ++        AL I PTRELA+Q+    GR L+     T +++   IGG +   
Sbjct: 70  ILLKREEKLKKMQVG-ALIITPTRELAMQISEVMGRFLQGFPQFTQILL---IGGSNPIE 125

Query: 117 ERRDLQN-GAHIVVGTPGRLCDHIRGK--GLNIS----HLKAVVLDEADEMLDLGFRDDI 169
           +   L+  GA+I++ TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   +
Sbjct: 126 DVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASL 185

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYR 222
             IL   PK+RR  +FSAT +  +  L +   ++ VR+ +       +S  +  + +   
Sbjct: 186 NTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNY 245

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA---LSGELS 279
             +    ++ N +V  LR H  +  +VF ST A V  F K L E L + V+   + G++ 
Sbjct: 246 YTMCRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKAL-EVLVKNVSIHCIHGKM- 303

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           + +R+      R  ++ + + TDV ARGID+P++  V+  +  S+  + +HR GRT R G
Sbjct: 304 KHKRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIG 363

Query: 340 RKGMS-VFVIP 349
            +G + VF++P
Sbjct: 364 NQGNALVFLLP 374


>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
 gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
          Length = 569

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 182/358 (50%), Gaps = 11/358 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+ +  P+ I  +L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L L
Sbjct: 127 VKTFKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPL 186

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQ----VGRELEWLYA--KTGVVVAVCIG 110
               L +     F     P  L + P+RELA Q    + R  + L A     +   +CIG
Sbjct: 187 IMFALEQETGLPFVRNEGPYGLIMCPSRELARQTYNTIKRFCQALTADGHPEIRTMLCIG 246

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+S+  +   ++ G HI V TPGRL D +  K L++   + + +DEAD M+D+GF +D+ 
Sbjct: 247 GISMKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLAIDEADRMIDMGFEEDMR 306

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +      +R+ L+FSAT+   I   AK+     V VN+      + D+      V    
Sbjct: 307 TVFSYFKAQRQTLLFSATMPKKIQNFAKSALVRPVTVNVGRAGAANLDVIQEVEYVKQEA 366

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+  G    ++F   +  V    + L     + VA+ G   Q+ER  A+   
Sbjct: 367 KIVYLLECLQKTGPP-VLIFAEKKKDVDDIHEYLLLKGVEAVAIHGGKDQEEREFAITSF 425

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  V IATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I
Sbjct: 426 KLSKKDVLIATDVASKGLDFPDVKHVINYDMPEDIENYVHRIGRTGRCGKTGLATTFI 483


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 180/339 (53%), Gaps = 11/339 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL+++G+V+ T VQE ++    + K ++  +QTGSGKT  F L L        D+  
Sbjct: 12  IQTALADKGFVHPTEVQEKLIPIISKGKSLIGQSQTGSGKTHTFLLPLF-------DKVQ 64

Query: 71  PASAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AH 126
           P    + + I AP+RELA Q+ +E + L  +++T + V   +GG    R+   + N    
Sbjct: 65  PEKNEVQVVICAPSRELASQIYQEAKQLASFSETEIRVMNFVGGTDKKRQVDRIANQQPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D I  + L I    A V+DEAD  LD+GF  +++ I     +  + L+FS
Sbjct: 125 VVIGTPGRILDMINEQALQIHTAFAFVVDEADMALDMGFLPEVDQIAAKFSEDIQFLVFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++ V   IAS+      ID   +     +  + +  +L       
Sbjct: 185 ATIPEKLRPFLKKYMQNPVIEEIASKTVISDSIDNWLISTKGKNTSHLVYQLLTVGHPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+  V+     L E   +V  + G++S +ER   ++ +++   +  +ATD+AAR
Sbjct: 245 AIVFANTKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNMEFQYVVATDLAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  +  VI+AE+  + +  +HR GRTGR    G+++
Sbjct: 305 GIDIEGVSHVINAEIPDDLDFFIHRVGRTGRNQLSGIAI 343


>gi|264679533|ref|YP_003279440.1| hypothetical protein CtCNB1_3398 [Comamonas testosteroni CNB-2]
 gi|262210046|gb|ACY34144.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 431

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/352 (32%), Positives = 182/352 (51%), Gaps = 13/352 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+    +  
Sbjct: 14  DATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRSHTGF 73

Query: 73  SAPLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             PLA L + PTRELA+QV   L  +    +      V  GGVS++ +   L+  A  +V
Sbjct: 74  VRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINPQMMQLRGSADFLV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L+FSAT 
Sbjct: 134 ATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALLPGKRQTLLFSATF 193

Query: 190 SPAITTLAKNYQKDAVRVNI-ASENRQHS----DIDYRAVLVALSDRDNAIVNILR---- 240
              +  LA     D VRV + A +  +HS    +I  RA+ V    R   + ++++    
Sbjct: 194 PQNVEALATRLLHDPVRVQVDADQAAEHSASPENISQRAIAVDGPRRTQLLRHLVKQGEN 253

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF + R +       L +         G++SQ  R + L   +  R ++ I 
Sbjct: 254 QPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVLDQFKAKRWQLLIT 313

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++ FV P +
Sbjct: 314 TDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPAD 365


>gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 419

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L   G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     L+    RFS  
Sbjct: 14  ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTLQHLIDFPRRFSGQ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  L L   PTRELA Q+ R    L    G+ +A+  GGV    +   L     I+V TP
Sbjct: 74  ARILILT--PTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEALAGNVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ ++FSAT+   
Sbjct: 132 GRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNMLFSATLEGG 191

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +   A+   KD + +++ +   + + I     L    +   A++ ++LR    K  IVF
Sbjct: 192 GVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLLRQEDVKRTIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V+     L +       + G++ Q++R  AL     G   V +ATDVAARGID+
Sbjct: 252 VKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 312 DDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|115400041|ref|XP_001215609.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
 gi|114191275|gb|EAU32975.1| ATP-dependent rRNA helicase RRP3 [Aspergillus terreus NIH2624]
          Length = 360

 Score =  166 bits (419), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 155/275 (56%), Gaps = 2/275 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +L +APTRELA Q+   +E L A+  V   + IGG+ +  +   L    H++V TPGRL 
Sbjct: 14  SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLL 73

Query: 137 DHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+   KG ++  LK +VLDEAD +LDL F   ++ +L   PK R+  +FSAT+S  + +
Sbjct: 74  DHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPK-RKTYLFSATMSSKVES 132

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           L +    D VRV+++++N+  S +    + +    +D  +V +L     +  I+F  T  
Sbjct: 133 LQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNERAGQMGIIFTRTVH 192

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              R + +L    F  + + G+LSQ  R  +L   R     + IATDVAARG+D+P ++ 
Sbjct: 193 ETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDY 252

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           V++ +L  + +  +HR GRT RAG+ G++   + Q
Sbjct: 253 VLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQ 287


>gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1]
 gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32]
 gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 419

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L   G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     L+    RFS  
Sbjct: 14  ESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRFSGQ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  L L   PTRELA Q+ R    L    G+ +A+  GGV    +   L     I+V TP
Sbjct: 74  ARILILT--PTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEALAGNVDILVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++ ++FSAT+   
Sbjct: 132 GRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQNMLFSATLEGG 191

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            +   A+   KD + +++ +   + + I     L    +   A++ ++LR    K  IVF
Sbjct: 192 GVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLLRQEDVKRTIVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V+     L +       + G++ Q++R  AL     G   V +ATDVAARGID+
Sbjct: 252 VKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 312 DDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
          Length = 802

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 175/349 (50%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 200 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLL-- 257

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P    L + PTRELA  V   +E L   T +   + +GG+S   +   L++
Sbjct: 258 ---FRPKRVPAIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRS 314

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ 
Sbjct: 315 MPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQT 374

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILR 240
           ++FSAT++  I  L        VR+      ++ + +    V +  +   N  A++  L 
Sbjct: 375 MLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALC 434

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       I
Sbjct: 435 LKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLI 494

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +
Sbjct: 495 ATDVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFV 543


>gi|313202589|ref|YP_004041246.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441905|gb|ADQ78261.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 443

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 188/369 (50%), Gaps = 29/369 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  ALS+ G    T++QE      +  KD++  AQTG+GKT+A+ L         
Sbjct: 7   NINSPLLNALSDLGLTQPTTIQEKAYPVIMSGKDMVGIAQTGTGKTIAYLLPCLRQW--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F+    P  L + PTREL +QV  ++E L     V V    GGV++ R+   +  G 
Sbjct: 64  --KFTKEKHPQILIVVPTRELVIQVVEQVEKLTTYMSVRVVGVYGGVNMIRQTPLVVAGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D      L +  +K  V+DE DEML+LGFR  +  I+D  P KR+ LMF
Sbjct: 122 DVLVATPGRLLDLALNGSLKLKSIKRFVIDEVDEMLNLGFRPQLVRIIDLLPTKRQNLMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGA 244
           SATIS  +  L  ++  + + +  A       +I      V     + N +  +L  H  
Sbjct: 182 SATISEELKDLVHDFFVEPLEIEAAPTGTPLENIKQIGFRVPNFYTKVNMLEFLLNNHPE 241

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVA--LSGEL-------SQQERSNALQMMRDGR 294
               +VF ST+         LA+ L+  +A    G+        SQ  R  +++  ++  
Sbjct: 242 FSKVLVFTSTKK--------LADALYDEIASKFPGQFGLIHSNKSQNNRFESMRGFKESE 293

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV IATD+ ARG+D+ D+  V++ ++   PEN +HR GRTGRA +KG+++  I      
Sbjct: 294 YRVLIATDIVARGLDISDVSHVVNFDVPEVPENYMHRIGRTGRADKKGVALTFI-----T 348

Query: 355 RAERLFREA 363
           +A++ +REA
Sbjct: 349 KADKEYREA 357


>gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens]
          Length = 483

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 175/346 (50%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L    D +   
Sbjct: 15  EQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL--SEDPY--- 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L + PTRELA Q+  +   L    G+   + + G+ +  +  +L    H+V+ TP
Sbjct: 70  -GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRKPHVVIATP 128

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRMLMFSAT 188
           GRL DH+R     +I  ++ +V+DEAD +L+ G  D   D+E IL + P +R+ L+FSAT
Sbjct: 129 GRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
           ++  +  L              +       +D R +LV    +D  +V++++     H  
Sbjct: 189 LTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHED 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ IATDVA
Sbjct: 249 WSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 309 SRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354


>gi|294497160|ref|YP_003560860.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347097|gb|ADE67426.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 401

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 197/368 (53%), Gaps = 9/368 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           +  E +   + EA  + G+   T++Q   ++  L  KDV+  + TG+GKT+A+       
Sbjct: 3   QFIETLQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAY------- 55

Query: 62  LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL    R  P  + + A+ +A + EL +Q+  E++     +G+  A  IGG ++ R+   
Sbjct: 56  LLPVLHRIQPGPSHIQAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLEK 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   +I+VGTPGRL + I+ K L +  +K +V+DEAD++        ++ I+  +   R
Sbjct: 116 LKKRPNIIVGTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHFQTVQQIVKMALSDR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT+S    +LAK+     + + +  +    S +++  +     D+ + +  ++R
Sbjct: 176 QILVFSATVSERTKSLAKDMMNHPLEIEVGRDELPASKVEHVYIKSEARDKVDVLRKLVR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K A+ F     ++  F + L     +  +L  E  +++R+  ++  R G   V +A
Sbjct: 236 QEQMK-ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLLA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  VIH ++  + +  +HRSGRTGR+G +G  + ++ +  +R  +++ 
Sbjct: 295 TDVAARGLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQIA 354

Query: 361 REANVSVV 368
           RE  +S+V
Sbjct: 355 RELQLSLV 362


>gi|69248136|ref|ZP_00604639.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878212|ref|ZP_05657865.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881006|ref|ZP_05660659.1| helicase [Enterococcus faecium 1,231,502]
 gi|257884664|ref|ZP_05664317.1| helicase [Enterococcus faecium 1,231,501]
 gi|257889589|ref|ZP_05669242.1| helicase [Enterococcus faecium 1,231,410]
 gi|257892472|ref|ZP_05672125.1| helicase [Enterococcus faecium 1,231,408]
 gi|258616279|ref|ZP_05714049.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|260559258|ref|ZP_05831444.1| helicase [Enterococcus faecium C68]
 gi|293553475|ref|ZP_06674103.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|293559336|ref|ZP_06675878.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|293569834|ref|ZP_06680921.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|294617902|ref|ZP_06697511.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|294622258|ref|ZP_06701312.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|314939754|ref|ZP_07846976.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314942115|ref|ZP_07848971.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948290|ref|ZP_07851682.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314952378|ref|ZP_07855385.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314992003|ref|ZP_07857456.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314995699|ref|ZP_07860789.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194541|gb|EAN09035.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257812440|gb|EEV41198.1| helicase [Enterococcus faecium 1,230,933]
 gi|257816664|gb|EEV43992.1| helicase [Enterococcus faecium 1,231,502]
 gi|257820502|gb|EEV47650.1| helicase [Enterococcus faecium 1,231,501]
 gi|257825949|gb|EEV52575.1| helicase [Enterococcus faecium 1,231,410]
 gi|257828851|gb|EEV55458.1| helicase [Enterococcus faecium 1,231,408]
 gi|260075015|gb|EEW63331.1| helicase [Enterococcus faecium C68]
 gi|291587582|gb|EFF19459.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|291595847|gb|EFF27131.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|291598229|gb|EFF29324.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|291602352|gb|EFF32576.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|291606700|gb|EFF36092.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|313590090|gb|EFR68935.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593438|gb|EFR72283.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313595495|gb|EFR74340.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313599125|gb|EFR77970.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313640983|gb|EFS05563.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645271|gb|EFS09851.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 449

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + AE +   
Sbjct: 13  INEALTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINAEKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E      R+R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFEAHQRKREMERKMERP------QGRPKKF 647


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 178/341 (52%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  E+ R+ 
Sbjct: 14  IRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAI-DEDARYV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRE-RRDLQNGAHI 127
            A     +  AP+RELA Q+ R    L   +G+ +A+    GG    R+  R  QN   +
Sbjct: 73  QA-----IVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNEPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|313677314|ref|YP_004055310.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312944012|gb|ADR23202.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 380

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 191/370 (51%), Gaps = 13/370 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   LS++   +   +Q+ ++   +  KDVL  A+TGSGKT+A+ L + + L   
Sbjct: 7   NLPIALSNVLSKQNIKSPFPIQQEVIPLAMDGKDVLGIAKTGSGKTLAYVLPILTKL--- 63

Query: 66  NDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERR 119
              F P +    P  L + PTREL+ QV  E+  L+  T           GG SV+ + +
Sbjct: 64  --NFFPEARNRQPQVLILVPTRELSQQV-LEVFKLFVDTNRNHSKTMAVFGGTSVNPQMQ 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     I+V TPGRL D +    L +S L+ +V+DEAD++L+  F+ +++ IL   P  
Sbjct: 121 GM-GEVKILVATPGRLLDLVSSNALKLSSLQLLVIDEADKILNANFKKELDEILKIIPGT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+SP +  L + Y      ++I  +  +   I   A  V  + +   +  ++
Sbjct: 180 AQKLLFSATLSPDVQKLKQLYLNKPSIIHIEQKEEKVELIKQSAYAVEANQKGPLLRYLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K  +VF S+  S ++    L ++    +A+  + SQ  R+ AL   RDG+  V +
Sbjct: 240 KSKDLKQVMVFTSSITSANKVADKLRKNGIDALAVHSKKSQHARNQALSDFRDGKVNVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ +RGID+  L  VI+ EL  +P++ +HR GRTGRA   G ++ +I +      E +
Sbjct: 300 TTDLLSRGIDIEYLPFVINYELPRSPKDFVHRIGRTGRAKHAGEAISLISKEESHHFEVI 359

Query: 360 FREANVSVVW 369
            ++ N  +  
Sbjct: 360 QKKINYKITL 369


>gi|302407451|ref|XP_003001561.1| ATP-dependent RNA helicase MSS116 [Verticillium albo-atrum
           VaMs.102]
 gi|261360068|gb|EEY22496.1| ATP-dependent RNA helicase MSS116 [Verticillium albo-atrum
           VaMs.102]
          Length = 588

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 140/468 (29%), Positives = 222/468 (47%), Gaps = 40/468 (8%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           P ++     +  + ++  VQ A L+  L     D LV A+TG+GKT+AF L    T++ +
Sbjct: 88  PTIVKTITEDLKFDHMMPVQAATLHELLPPNRSDCLVQAKTGTGKTIAFLLPALQTMITQ 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124
           N R + A   L L I+PTRELA+Q+ +E   L  +     V + IGG +  RE R +  G
Sbjct: 148 N-RGADAGISL-LVISPTRELAMQIAKEATNLLQRLPKYRVRIAIGGTNKDREERAILGG 205

Query: 125 AHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGF----RDDIEFILDSSPK 178
             I++ TPGRL DH+  + +   + HL  +VLDEAD +LD+GF    RD +  + D    
Sbjct: 206 CDILIATPGRLFDHMSNENVLWALRHLDTLVLDEADRLLDMGFMKALRDIVGQLPDKKAT 265

Query: 179 KRRMLMFSATISPAIT-----TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
            R+ ++FSATI+P +       L+  Y+   +    A E   H  +    + V   S   
Sbjct: 266 NRQGMLFSATIAPHVEQVAGLVLSPGYK--FISTIPAGEINTHQRVPQLLIKVPYFSSVS 323

Query: 233 NAIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNA 286
            A+V  +R     H A  AI+F  T A    +  VL +   L  V  L   +SQ +R+  
Sbjct: 324 AAMVGSIREEARQHEAFKAILFAPTAALADLYGFVLEKIAGLPPVSILHSRISQNKRTKV 383

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
               RD R+ + +ATDV ARG+D P +  V    + ++ ++ +HR GRT RA  +G  +F
Sbjct: 384 TNDYRDSRSAILVATDVVARGMDFPGVTTVFQVGIPADKQSYIHRLGRTARASAEGRGIF 443

Query: 347 VI-------PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
           ++       P+   +    +  +A+ S   E +  ++ + E D  +I Q   +L      
Sbjct: 444 IVSEAEAWFPKWTLKEITFVPHDADTSSAVEVSAIIDTMEEGDKAKIYQ--AWLGYYNNH 501

Query: 400 EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
            K +      K D E++ A      R GL  PE        +G+   R
Sbjct: 502 MKAL------KWDKEELVAQGNIYARDGLGCPETPAIAKTTAGKMGLR 543


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNGDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E      R+R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFEAHQRKREMERKMERP------QGRPKKF 647


>gi|58465442|gb|AAW78519.1| DEAD box RNA helicase-PL10B [Monopterus albus]
          Length = 376

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 174/333 (52%), Gaps = 21/333 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA--------------- 64
           Y   T VQ+  +     ++D++  AQTGSGKT AF   + S +                 
Sbjct: 44  YTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLPPILSQIYTDGPGEALNAAKASGQ 103

Query: 65  ENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           EN ++      P++L +APTRELA+Q+  E      ++ V   V  GG  + ++ RDL+ 
Sbjct: 104 ENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGADIGQQIRDLER 163

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK-- 179
           G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+  D+ P K  
Sbjct: 164 GCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPHKGI 223

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT    I  LA+++ ++ + + +        +I  + V V  SD+ + ++++L
Sbjct: 224 RQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLL 283

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R G+  + 
Sbjct: 284 SATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQFRSGKCPIL 343

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
           +AT VAARG+D+ +++ V + +L S+ E  +HR
Sbjct: 344 VATAVAARGLDISNVKHVNNFDLPSDIEEYVHR 376


>gi|320163352|gb|EFW40251.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1073

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/333 (31%), Positives = 180/333 (54%), Gaps = 7/333 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   +  +D++  A+TGSGKT+AF L +   +LA+    S    P+ L + PT
Sbjct: 394 TPIQAQAVPAVMSGRDLIAIAKTGSGKTLAFVLPMIRHILAQPP-LSADDGPIGLILTPT 452

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI---R 140
           RELAVQ   E +   A   +      GG ++  +  DL+ GA I+V TPGR+ D +    
Sbjct: 453 RELAVQTYTECKRFAAPNQLRTVCLYGGSAITEQIADLKRGAEIIVCTPGRMIDMLTANS 512

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA-KN 199
           G+  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT   ++ TLA K 
Sbjct: 513 GRVTNLRRVTYLVLDEADRMFDMGFEPQVMRIVNNIRPARQTVLFSATFPRSMETLAYKI 572

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVS 258
                +++ +   +    +ID   +++  +++   ++ +L  +    + IVF   + +  
Sbjct: 573 LHHSPLQIIVGGRSIVSKEIDQHVLVIPEAEKYLRLLELLGVWQEEGSVIVFVERQEAAD 632

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L    +  ++L   L Q +R   L   + G  R+ IAT VAARG+D+ +L+LV++
Sbjct: 633 MLLKSLYASGYPCLSLHAGLDQGDREETLIAFKAGDVRLLIATSVAARGLDVKELKLVVN 692

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
            +  ++ E+ +HR GRTGRAGRKG S  F+ P+
Sbjct: 693 YDAPNHYEDYVHRVGRTGRAGRKGTSYTFLTPE 725


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 184/343 (53%), Gaps = 8/343 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     L+    RF
Sbjct: 11  ILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPALQHLIDFPRRF 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S  +  L L   PTRELA Q+ R    L ++      +  GGV    +   L+    I+V
Sbjct: 71  SGQARILILT--PTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDALKGNVDILV 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL +++     N   ++ +V+DEAD MLD+GF   +E +   S  +++ ++FSAT+
Sbjct: 129 ATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQTMLFSATL 188

Query: 190 SPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAK 245
             + +   +     D V+V   +   + + I ++ + +A  ++D   N + +IL+    K
Sbjct: 189 EGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIA-DNKDHKFNLLCSILQQEETK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  TR +V+    +L +       + G++ Q++R  AL     G   V +ATDVAA
Sbjct: 247 RAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNVLLATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           RGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++
Sbjct: 307 RGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLV 349


>gi|169843536|ref|XP_001828497.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
 gi|116510435|gb|EAU93330.1| ATP-dependent RNA helicase DBP3 [Coprinopsis cinerea okayama7#130]
          Length = 671

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 185/366 (50%), Gaps = 43/366 (11%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
             N+PQ + E  + +G+   + +Q     P L  KDV+  A+TGSGKT+AFG+   + L+
Sbjct: 232 LSNLPQRLREE-AFKGFKEPSPIQACTWPPALEGKDVVGIAETGSGKTLAFGIPALNRLI 290

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +       ++    L +APTRELA+Q    L  L A  G+      GGVS   + + L+ 
Sbjct: 291 SSPSGSGIST----LIVAPTRELAIQTHDNLSALAASFGIASVAIFGGVSKDSQIKMLKK 346

Query: 124 G-------------------AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
                                 IVVGTPGR+ D ++   L++S +  +VLDEAD MLD G
Sbjct: 347 SISSSKSKKGKGGEGGDGLVTRIVVGTPGRILDLMQDGVLDLSGVDYLVLDEADRMLDKG 406

Query: 165 FRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           F +DI  I+ ++ KK  R+ +MFSAT   A+  LA  +Q+D VRV + S++   +    +
Sbjct: 407 FENDIRRIIAATKKKEERQTMMFSATWPEAVRRLASTFQRDPVRVTVGSDDLTANSRVEQ 466

Query: 223 AVLV--ALSDRDNAIVNILRYHGAKNA---------------IVFCSTRASVSRFTKVLA 265
            V V   +  +D  + N LR    KN                +VF   +   SR  ++L 
Sbjct: 467 VVEVFDDVRSKDQRLNNHLRALLPKNKKSSASANSPLEISRILVFALYKKEASRVEEMLK 526

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              + V AL G++SQ  R  AL   + G+ ++ +ATDVAARG+D+P++  VI+       
Sbjct: 527 RQGYTVGALHGDMSQSARMEALDNFKTGKTQLLVATDVAARGLDIPNVGAVINYTFPLTI 586

Query: 326 ENLLHR 331
           E+ +HR
Sbjct: 587 EDYIHR 592


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 168/331 (50%), Gaps = 3/331 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   PA  P+A+ 
Sbjct: 270 YTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKE-LQPADGPIAVI 328

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 329 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 388

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 389 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARD 448

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIVFCSTRASV 257
              D +RV        + DI     ++         +   ++ +    + +VF + +A+ 
Sbjct: 449 ILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTSTGSVLVFVTKKANA 508

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ V+
Sbjct: 509 EELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVV 568

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +++ + +   HR GRTGRAG KG++  ++
Sbjct: 569 NYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 599


>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 179/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 176 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLL-- 233

Query: 66  NDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++
Sbjct: 234 ---FRPKRVFATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRS 290

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ 
Sbjct: 291 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 350

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  +  L K      +R++     R+   +    V +  +   +++  ++++ 
Sbjct: 351 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 410

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       I
Sbjct: 411 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 470

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +
Sbjct: 471 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 519


>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 887

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 179/348 (51%), Gaps = 13/348 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ E+GY + T +Q   +   L+ +D+  SA TGSGKT AF L     LL  
Sbjct: 275 NLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTLERLLY- 333

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQNG 124
             R       L +A+ PTRELA Q   +       T +   +  GG + + ++ + LQ+ 
Sbjct: 334 --RDRSRKETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQIQVLQSK 391

Query: 125 AHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             I++ TPGR+ DH+       +  ++ ++LDEAD +L+LGF   I+ ILD  P  R+ +
Sbjct: 392 PEIIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIPTARQTM 451

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV------N 237
           +FSAT++  I  L K   K+ +RV+  S     S +      + L+D +N I+      +
Sbjct: 452 LFSATMTDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQE--FIKLADDENIIMKQAILLS 509

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         I+FC+T++ V +   +L     +V  LS  L+Q  R   L          
Sbjct: 510 LCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASHETDF 569

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + TDVA+RG+D+  ++ VI+ ++  N +  +HR GRT RAG  G++V
Sbjct: 570 LVCTDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAV 617


>gi|255513847|gb|EET90112.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 434

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/357 (32%), Positives = 187/357 (52%), Gaps = 13/357 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+I   + +   LS  G    T VQ   +   L  +D++V A+TG+GKT AF    
Sbjct: 1   MNEFEDIGISKRLASGLSAIGITAPTDVQRESIPKVLSGRDIIVRAKTGTGKTYAF---- 56

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL   ++ S      AL +APTRELAVQ+  E  +      +   V  GGVS++ + 
Sbjct: 57  ---LLPIMEKISRGRDIEALILAPTRELAVQIF-ESGYKLRDNEIRAVVAYGGVSINMQM 112

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G +I++GTPGR+ D I    L++  +K +VLDEAD MLD+GF DD++ I+  + +
Sbjct: 113 QKISRGCNILIGTPGRILDLISRGVLDLEKVKYLVLDEADIMLDMGFIDDVKDIVRHTGR 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ + FSATI   + +LA  + ++   +++   E+   + I +    V  +++ +A++ 
Sbjct: 173 GRQTMFFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEVGRNEKFSALLA 232

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  +  K  I+F  T+         L    ++ + + G LSQ  R N L   +   A +
Sbjct: 233 YIDEYKPKKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTLNNFKTD-ATM 291

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            + T+V ARGID+ D+  VI+ +   NP   LHR GR+ R G  G + F I  + QR
Sbjct: 292 LVTTNVTARGIDIRDISDVINYDCPDNPRVYLHRVGRSARMGADGRA-FSIITHQQR 347


>gi|242020238|ref|XP_002430562.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
 gi|212515734|gb|EEB17824.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
          Length = 606

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 202/386 (52%), Gaps = 21/386 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E  Y+  + +Q   +   L+ +DVL +AQTGSGKT+AF + +   L  +  +++  
Sbjct: 64  KGLYESNYITPSEIQRESIGYALQGEDVLGAAQTGSGKTLAFLIPVLEILYCK--QWTRL 121

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA Q+   L+ +         + IGG  +H E+  + +  +I++ TP
Sbjct: 122 DGVGALIITPTRELAYQIFETLKKIGKHHDFSAGLIIGGKDLHFEKGRM-DQCNIIICTP 180

Query: 133 GRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR+  H+    L + + ++ +VLDEAD  LDLGF++ +  I+++ P KR+ L+FSAT + 
Sbjct: 181 GRILHHMDENPLFDCNSMQILVLDEADRCLDLGFQETMNNIIENLPPKRQTLLFSATQTK 240

Query: 192 AITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  LA+   K+   V +  E++ HS    ++   V+  L D+   I + ++ H  +  +
Sbjct: 241 SVKDLARLSLKNPKYVAV-HEHKSHSTPESLEQSYVVCELHDKIKMIWSFIKNHKRQKIL 299

Query: 249 VFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +F S+   V ++  +L   L     ++AL G+L Q  R          +  V  ATD+AA
Sbjct: 300 IFLSSCKQV-KYIYLLFCRLRPGSPLLALYGKLHQLRRMKIYDEFCAKQNVVMFATDIAA 358

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAERLFREA- 363
           RG+D PD+  V+  +   + +  +HR+GRT R  + G S+ V +P   +  +E L  E  
Sbjct: 359 RGLDFPDVNWVVQLDCPEDAKTYIHRAGRTARYKKGGESLLVLLPSEEKAMSEELSAEKI 418

Query: 364 -------NVSVVWEPAPSVEAIRERD 382
                  N  ++  PA  +EA+  RD
Sbjct: 419 PISKIEINPKMLQSPARKIEALVARD 444


>gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 189/368 (51%), Gaps = 23/368 (6%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K F+ +P+     LS +   + T +Q+AI+   L   DV+  A+TGSGKT+A+ L     
Sbjct: 63  KDFDFLPKEYSSILSSKSITSPTPIQKAIIPLILEGNDVIAVAETGSGKTLAYALPGVIH 122

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH------ 115
           + A+      A  P  L +APTREL  Q+  + E L+ +T  V     GGV  +      
Sbjct: 123 IQAQ----PQALGPRILVLAPTRELVQQIQTQYE-LFTRTCCVY----GGVYKNLQYSEL 173

Query: 116 ---RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              ++ R+  +   +++GTPGRL D ++  G  +  +  VVLDEAD MLD+GF + I  I
Sbjct: 174 LGIKQSRNNISLPSVIIGTPGRLLDFMKD-GYPLKSITQVVLDEADRMLDMGFEEQITQI 232

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                K+R+ L FSAT    +  LA N+   ++   + I  +    +    + +++   +
Sbjct: 233 FQKVRKERQTLFFSATWPKEVQKLA-NFLCNENPNLLQIGEQGLSVNKNIQQEIIIVYEN 291

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +    V +      +  ++FC  +    +    L+ H  +   L G+L Q ER   ++  
Sbjct: 292 KFEQFVELAERLKGQKLLIFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMEDF 351

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           + G     I T++A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG+++ F  P
Sbjct: 352 KTGAINCLITTNLASRGLDISDVDVVINYDFPDNIEDYIHRIGRTGRAGKKGLAISFFEP 411

Query: 350 QNMQRRAE 357
            ++  R +
Sbjct: 412 GSINNRVK 419


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 163 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 221

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 222 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 281

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 282 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 341

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 342 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 399

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 400 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 459

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 460 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 492


>gi|37589691|gb|AAH59534.1| Ddx55 protein [Danio rerio]
          Length = 493

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 32/371 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K+ +NI Q     L E G+  +T VQ A +   +  KDV   A TGSGKT+AF +    
Sbjct: 14  VKLHDNILQ----TLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALE 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQV----GRELEWLYAKTGVVVAVCIGGVSVHR 116
            LL   ++        AL I PTRELA+Q+    GR L+     T +++   IGG +   
Sbjct: 70  ILLKREEKLKKMQVG-ALIITPTRELAMQISEVMGRFLQGFPQFTQILL---IGGSNPIE 125

Query: 117 ERRDLQN-GAHIVVGTPGRLCDHIRGK--GLNIS----HLKAVVLDEADEMLDLGFRDDI 169
           +   L+  GA+I++ TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   +
Sbjct: 126 DVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASL 185

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYR 222
             IL   PK+RR  +FSAT +  +  L +   ++ VR+ +       +S  +  + +   
Sbjct: 186 NTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNY 245

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA---LSGELS 279
             +    ++ N +V  LR H  +  +VF ST A V  F K L E L + V+   + G++ 
Sbjct: 246 YTMCRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKAL-EVLVKNVSIHCIHGKM- 303

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           + +R+      R  ++ + + TDV ARGID+P++  V+  +  S+  + +HR GRT R G
Sbjct: 304 KHKRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTARIG 363

Query: 340 RKGMS-VFVIP 349
            +G + VF++P
Sbjct: 364 NQGNALVFLLP 374


>gi|31981163|ref|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus]
 gi|56404614|sp|Q8K363|DDX18_MOUSE RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18
 gi|20380248|gb|AAH28246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|75517578|gb|AAI03777.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|148707837|gb|EDL39784.1| mCG1040626 [Mus musculus]
 gi|187954459|gb|AAI41231.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|187954929|gb|AAI41232.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
          Length = 660

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 196/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + +   ++    +F P 
Sbjct: 182 KAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPR 239

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 240 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATP 299

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 300 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 359

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 360 KVEDLARISLKKEPLYVGV-DDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 419 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 478

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 479 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 525


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 180/346 (52%), Gaps = 9/346 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q   + P ++ +D ++ +Q+G+GKT  F +  A  + ++    S  + P+ L
Sbjct: 40  GFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVG-ALEICSK----SKENVPMVL 94

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    +     +    CIGG  +  + +   +G  I+ GTPGR+   
Sbjct: 95  ILSPTRELAEQSEKVCTSIGDYLDIRTHSCIGGKKLKDDIKAFNSGVSIISGTPGRVLQM 154

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L+   +K +++DEADEM D GF+  +  I    P + + ++ SAT+   I  +A+
Sbjct: 155 IEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPRIQTVLVSATLPDDILVMAQ 214

Query: 199 NYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +++ +  E      I  Y   +     +   + ++        +I+FC+T+  V
Sbjct: 215 KFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDLYDTLTVTQSIIFCNTKNKV 274

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              +K + E+ F V  + G+L Q  R   L+  R+G+ RV I TD+  RGID+  + LV+
Sbjct: 275 EWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVLITTDLWGRGIDVQQVNLVV 334

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           + +L  N E  +HR GR+GR GR G+++ +I    ++M    ER +
Sbjct: 335 NYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSLLERFY 380


>gi|320580361|gb|EFW94584.1| eukaryotic initiation factor 4A [Pichia angusta DL-1]
          Length = 381

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 176/342 (51%), Gaps = 29/342 (8%)

Query: 5   ENIPQVIGEALSERGYVNLT-SVQEAILNPDL--------REKDVLVSAQTGSGKTVAFG 55
           ENI Q +   L E  Y N+  +  E  L P++          +DVL  AQ+G+GKT  F 
Sbjct: 4   ENI-QEVDSNLIESNYDNVVYTFDELNLKPEIIRAILPITEGRDVLAQAQSGTGKTATFT 62

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           +   S L   +++     A   L +APTRELA+Q+ + +  +     + V   IGG +V 
Sbjct: 63  I---SALQRIDEKLKKTQA---LILAPTRELALQIQKVVLAIGMHLDLTVHASIGGKAVQ 116

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+NGA IVVGTPGR+ D I         +K  ++DEADEML  GF++ I  +   
Sbjct: 117 EDMEALRNGAQIVVGTPGRVYDMIERGYFKTDAIKMFIMDEADEMLSSGFKEQIYNVFRF 176

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVAL 228
            P   ++++ SAT+   +  +   + ++ VR+ +  +        + + D+D        
Sbjct: 177 LPTTTQVVLLSATMPQDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYIDVDEEQY---- 232

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             + + + ++        A++FC+TR  V   T+ L E+ F V A+  +LSQQ+R   + 
Sbjct: 233 --KFDCLCDLYDSISVTQAVIFCNTRRKVETLTQQLTENNFTVSAIHSDLSQQDRDTIMN 290

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
             R G +R+ I+TD+ ARGID+  + LVI+ +L SN EN +H
Sbjct: 291 EFRTGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIH 332


>gi|258563984|ref|XP_002582737.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908244|gb|EEP82645.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 538

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 202/382 (52%), Gaps = 27/382 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF   +        D
Sbjct: 117 PWLVG-SLSAMAIRRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRW--SED 173

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   L    H+
Sbjct: 174 PF----GIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHV 229

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK- 179
           V+ TPGRL DHI+  G      +S ++ VV DEAD +L  G      D+E  L + P   
Sbjct: 230 VIATPGRLADHIKTSGEDTIFGLSRVRMVVFDEADRLLASGPGSMVPDVETCLSALPPST 289

Query: 180 -RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVL--VALSDRD 232
            R+ L+F+AT++P   A+ ++ +   +  V +  I++EN        +     V ++ R+
Sbjct: 290 SRQTLLFTATLTPEVRALKSMPRPKDRPPVFITEISTENNATIPPTLKQCYLQVPMTHRE 349

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     +G+K AI+FC+   +     ++L     +V +L   L Q ER++ L  
Sbjct: 350 -AFLHVLLSTEENGSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLAR 408

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVAARG+D+P + LV++ ++  NP++ +HR GRT RAGR+G +V ++ 
Sbjct: 409 FRASAARLLVATDVAARGLDIPSVSLVVNFDVPRNPDDYIHRVGRTARAGREGEAVTLVG 468

Query: 350 Q-NMQRRAERLFREANVSVVWE 370
           Q ++Q       R     VVWE
Sbjct: 469 QRDVQLVLAIEARVGRQMVVWE 490


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 179/347 (51%), Gaps = 22/347 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS------ 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +        P +      
Sbjct: 310 YDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPILNQMYEHGMSAPPQNNRQYSR 369

Query: 74  ---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +APT +LA Q+  E +    ++ +  AV  GG +   + R+L  G H++V 
Sbjct: 370 RKQYPSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVA 429

Query: 131 TPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPK-KRRMLMF 185
           TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I  I   L+  P  +R+ LMF
Sbjct: 430 TPGRLEDMITRGK-VGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMF 488

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------ 239
           SAT    I  LA ++  + + + +        +I    + V   D+ + ++++L      
Sbjct: 489 SATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEQDKRSYLLDLLSSIRDG 548

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL+  R G   + 
Sbjct: 549 PEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDRTQKEREEALRCFRSGDCPIL 608

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++ 
Sbjct: 609 VATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVAT 655


>gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155]
 gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 419

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 179/344 (52%), Gaps = 5/344 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     L+
Sbjct: 6   FQLDPSLL-ESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQHLI 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               RF  A     L + PTRELA Q+ R    L    G+ +A+  GGV    +   L  
Sbjct: 65  DFPRRF--AGQARILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEALAG 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++ +
Sbjct: 123 KVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQNM 182

Query: 184 MFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRY 241
           +FSAT+    +   A+    D + +++ +   + + I     L    +   A++ ++LR 
Sbjct: 183 LFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLLRQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF  TR  VS     L +       + G++ Q++R  AL     G   V +AT
Sbjct: 243 EDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVLLAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           DVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++
Sbjct: 303 DVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAI 346


>gi|156550342|ref|XP_001606676.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 425

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 186/352 (52%), Gaps = 25/352 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P+++  A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F LA    L LAEN
Sbjct: 52  PEIL-RAISDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELAEN 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                    L L +  TRELA Q+ +E E        V V+V  GG+ + ++   L+N  
Sbjct: 111 -------QVLVLVMCHTRELAFQISKEYERFSKYIPQVKVSVFFGGLPIQKDEEVLKNTC 163

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   IR K LN+ +LK  +LDE D+ML+ L  R D++ I  S+P  ++++
Sbjct: 164 PHIVVGTPGRILALIRSKKLNLKNLKHFILDECDKMLEQLDMRKDVQEIFRSTPHNKQVM 223

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-------QHSDIDYRAVLVALSDRDNAIV 236
           MFSAT+S  I  + K + +D + V +  E +       QH     +      + +   ++
Sbjct: 224 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHY---VKLKENEKNKKLFELL 280

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL ++     ++F  +        ++L E  F  + +   ++Q+ER    Q  +D + R
Sbjct: 281 DILEFN---QVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTKYQAFKDFQKR 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +AT++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ ++
Sbjct: 338 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLV 389


>gi|156406516|ref|XP_001641091.1| predicted protein [Nematostella vectensis]
 gi|156228228|gb|EDO49028.1| predicted protein [Nematostella vectensis]
          Length = 620

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 183/347 (52%), Gaps = 10/347 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + LS  GY + T +Q  +L   L  +DV+V A TGSGKT +F L + S +     +  
Sbjct: 207 LSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKTASFLLPMISRIHHITGKLL 266

Query: 71  PASAPL----ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           P+S  +     L +APTREL +Q+ ++  E+++  T +  A+ IGGV V  +   L+ G 
Sbjct: 267 PSSPEVRFIYGLILAPTRELCMQIEKQTKEFVHGMTNMRTALLIGGVPVPPQLHRLKMGV 326

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGR+ + I  + ++++H+   V+DE D ML LGF   ++ IL+    +R+ ++F
Sbjct: 327 QVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRRQTMLF 386

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHG 243
           SATI P+I  +A       V ++  S +     +    + V    +   + +IL+   H 
Sbjct: 387 SATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKSKKKQLFSILKDSRHF 446

Query: 244 AKNAIVFCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              A+VF  ++       + +++  H+ + +++ G+  Q ER+  LQ    G   + ++T
Sbjct: 447 NPPAVVFVESKLGADMLAEAVSKVCHI-KCLSMHGDKPQAERAQILQDFLAGECPLVVST 505

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V  RG+DL ++  VI+ ++    E  +H+ GR GR G  G S+  I
Sbjct: 506 AVLGRGVDLLNIRQVINFDMPPTYEEYVHQIGRAGRLGATGWSISFI 552


>gi|302532073|ref|ZP_07284415.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302440968|gb|EFL12784.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 509

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/362 (33%), Positives = 187/362 (51%), Gaps = 4/362 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + L   
Sbjct: 84  DMPAQLLATLGTQGMTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLALLART 143

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +    PLAL + PTREL  QV   L        + +   +GG+S+ R+   L+ GA
Sbjct: 144 AGQRAEPRRPLALVLVPTRELPQQVTDALTPYARSVKLRLTTAVGGMSIGRQAGALRAGA 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-SPKKRRMLM 184
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD   P+ +RML 
Sbjct: 204 EVVVATPGRLKDLIERGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRML- 262

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  L + +  D V  ++       +  ++  + V  +D+      I    G 
Sbjct: 263 FSATLDRNVDLLVRRHLADPVVHSVDPSQGAVTTREHHVLHVQGADKQRMTTEIAARDG- 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +V R T+ L +   +  AL G  SQ +R+  L   + G   V +AT+VA
Sbjct: 322 -RVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVA 380

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N  R   RL   A 
Sbjct: 381 ARGIHVDNLDLVVNVDPPTDHQDYLHRGGRTARAGESGSVVTLVTPNQHREMARLMTAAG 440

Query: 365 VS 366
           ++
Sbjct: 441 IT 442


>gi|237843393|ref|XP_002370994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211968658|gb|EEB03854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221481804|gb|EEE20174.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221502304|gb|EEE28037.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 434

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 184/348 (52%), Gaps = 12/348 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F L++   L L  +      
Sbjct: 58  AIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDTSGEEGNT 117

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRE---RRDLQNGAHI 127
              + L IA TRELA Q+  E +    Y K  V   V  GG+S+ +     +D +   HI
Sbjct: 118 QGVVCLGIAHTRELAFQIKNEFDRFSKYLKN-VKCEVVYGGISIQKNIDMLKDAKTTPHI 176

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGR+   I+GK LN   +   VLDE D+ L+ L  R D++ I  ++PKK++++ FS
Sbjct: 177 LIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKKQVMFFS 236

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT++  I  + K + +  V V I  E++   H  + Y   L   S+++  + ++L     
Sbjct: 237 ATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQE-SEKNRKLNDLLDTLEF 295

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  + +      ++L E  F  +A+   L Q+ER N  Q  ++   R+ +ATD+ 
Sbjct: 296 NQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMVATDLF 355

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++ FV  Q+
Sbjct: 356 GRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQD 403


>gi|255566644|ref|XP_002524306.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536397|gb|EEF38046.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 406

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 165/316 (52%), Gaps = 13/316 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +       AL
Sbjct: 51  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YGLVQCQ-AL 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+   L  L     V V  C+GG SV  ++R L+ G H+VVGTPGR+ D 
Sbjct: 105 VLAPTRELAQQIDMVLRALGDYLDVKVHACVGGTSVREDQRILRAGVHVVVGTPGRVFDM 164

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 165 LRRQSLPADYIKMFVLDEADEMLSRGFKDQIYDIFQFLPAKVQVGVFSATMPPEALDITR 224

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNILRYHGAKNAIVFCSTR 254
            +    VR+ +  +      I    V V   D+D      + ++        +++F +TR
Sbjct: 225 KFMNKPVRILVKRDELTLEGIKQYYVHV---DKDEWKLETLCDLYETLPIAQSVIFVNTR 281

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T  +      V A  G++ Q      ++  R G +RV IATD+ ARGID+  + 
Sbjct: 282 RKVDWLTDKMRSRDHTVSATHGDMDQNASDVIMREFRSGSSRVLIATDLLARGIDVQQVS 341

Query: 315 LVIHAELSSNPENLLH 330
           LVI+ +L++ PEN LH
Sbjct: 342 LVINYDLTTQPENYLH 357


>gi|71029108|ref|XP_764197.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351151|gb|EAN31914.1| RNA helicase, putative [Theileria parva]
          Length = 635

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 188/375 (50%), Gaps = 11/375 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P+ I  ++   G+   T +Q       L  +D++  A+TGSGKT+AF L  A   +
Sbjct: 214 YTSFPRYILSSIEAAGFKEPTPIQVQSWPIALSGRDMIGIAETGSGKTLAF-LLPAIVHI 272

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQ 122
                  P   P+ L +APTRELA Q+ +E   ++ ++  +  +V  GGV    +   L+
Sbjct: 273 NAQALLRPGDGPIVLVLAPTRELAEQI-KETALVFGRSSKLKTSVAYGGVPKRFQTIALR 331

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++  PGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ 
Sbjct: 332 RGVEILIACPGRLIDFLESSVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQT 391

Query: 183 LMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           LMFSAT    +  L+++    + V VNI S +        + V + L +R+  +      
Sbjct: 392 LMFSATWPKEVIALSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFI-LEEREKRVKLKELL 450

Query: 242 HGAKNA---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               +    ++F  T+      T+ L    +  + + G+  Q+ER+  L   + G+  + 
Sbjct: 451 KKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKSGKHPIM 510

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RR 355
           IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG KG S  F+ P   +  R 
Sbjct: 511 IATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKSARE 570

Query: 356 AERLFREANVSVVWE 370
             +L REAN  +  E
Sbjct: 571 LVKLMREANQEIPPE 585


>gi|241253045|ref|XP_002403786.1| RNA helicase, putative [Ixodes scapularis]
 gi|215496560|gb|EEC06200.1| RNA helicase, putative [Ixodes scapularis]
          Length = 463

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 190/358 (53%), Gaps = 21/358 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ + +AL+E  +   T +Q   L   +R+  DV+ +A+TGSGKT+AFG+ +   +  +
Sbjct: 68  VPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDVMGAAETGSGKTLAFGIPILHHIAEQ 127

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R       L AL + PTRELA+QV + L+     TG+ V   IGG+S  ++ R L+  
Sbjct: 128 KARIGDGPMSLQALVLTPTRELAIQVKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRR 187

Query: 125 AHIVVGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------- 174
             IVV TPGRL    D       ++S+++ +V+DEAD M++ G  +D+  +L        
Sbjct: 188 PEIVVATPGRLWELVDQNTPHLSDVSNVRYLVIDEADRMVEKGHFEDLTRLLALMNADRV 247

Query: 175 SSPKKRRMLMFSATISPAITTL----AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
              K+R+  +FSAT++  +  +    AK    D  R    +E+ + S    R V  ++ D
Sbjct: 248 DGAKRRQNFVFSATLTMQLMRIIGVSAKPKVVDLTRKLGTAESLRES----RIVCSSIED 303

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +D+ +   L  H  +  +VFC++  SV R   VL       + L  ++ Q++R   L   
Sbjct: 304 KDSRLYYFLLAHPGRT-LVFCNSIDSVRRLVSVLDLLQCSPLPLHAQMQQRQRLKNLDRF 362

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R     + +ATDVAARG+D+  +E VIH ++    E  +HRSGRT RA   G+SV ++
Sbjct: 363 RSSPTGLLLATDVAARGLDIEGIEHVIHFQVPRTAEVYVHRSGRTARAASDGLSVMLM 420


>gi|194015973|ref|ZP_03054588.1| ATP-dependent RNA helicase [Bacillus pumilus ATCC 7061]
 gi|194012328|gb|EDW21895.1| ATP-dependent RNA helicase [Bacillus pumilus ATCC 7061]
          Length = 380

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 186/357 (52%), Gaps = 8/357 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+   T++QE        ++DV+  + TG+GKT+A+ L L + +        
Sbjct: 15  IQENFQAAGFEKPTAIQEKTAEWITEKRDVIAESPTGTGKTLAYVLPLLNKIDVN----- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +AP+REL +Q+   ++     + +     IGG ++ +++  L+   +IVV 
Sbjct: 70  -IKHPQVLILAPSRELVMQIFDVVQEFKQGSDIKAISLIGGANIKKQQEKLKKHPNIVVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ K L +  +K +VLDEAD++L       I+ I+ S+ K+R++L FSAT+ 
Sbjct: 129 TPGRVQELIKIKKLKMHEVKTIVLDEADQLLVPEHMKTIQAIIKSTLKERQILCFSATLK 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                L K    +   + IA    +   + +  +L    D+   +  + R    + A+VF
Sbjct: 189 DETVQLIKEMTTEPEVLKIARSEEEAQKVGHYYLLCDQRDKVKLLQKLSRLEDMQ-ALVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
                ++S + + LA H   +  L  E  + ER+  L+        + +ATD+AARGID+
Sbjct: 248 VRDITNLSIYAEKLAYHHVDLGVLHSEAKKAERAIILKEFEQREFPLLLATDIAARGIDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
            DL  VIHA+L  N E  +HRSGRTGRAG++G  + ++    Q   +++ ++ N+S+
Sbjct: 308 DDLPYVIHADL-PNEEGYIHRSGRTGRAGKEGAVISLVTPQEQSMLKKMAKKLNLSL 363


>gi|118374174|ref|XP_001020279.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302045|gb|EAS00033.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 475

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 152/275 (55%), Gaps = 14/275 (5%)

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           C GG     +R+ L+ G  +VVGTPGR+ D I+ K L   HLK  +LDEADEML  GF+D
Sbjct: 203 CTGGTDPKEDRKRLREGVQVVVGTPGRVLDLIQKKTLVTDHLKLFILDEADEMLGRGFKD 262

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            I  I  + P   ++ +FSAT++P I  + K + +D   + + +++     I  +   +A
Sbjct: 263 QINKIFQNLPHDIQVALFSATMAPEILEITKQFMRDPATILVKNDDLTLDGI--KQFYIA 320

Query: 228 LSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           L   +   + +V +        AI++C+T+  V      L E    V A+ GE+ QQ R 
Sbjct: 321 LDKEEWKFDTLVELYNNIEIAQAIIYCNTKKRVDELRDKLIEKNMTVSAMHGEMDQQNRD 380

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++  R G +RV I TD+ +RGID+  + LVI+ +L    E+ +HR GR+GR GRKG++
Sbjct: 381 LIMKEFRTGTSRVLITTDLLSRGIDIHQVNLVINYDLPLKKESYIHRIGRSGRFGRKGVA 440

Query: 345 V-FVIPQNMQ--RRAERLFREA------NVSVVWE 370
           + FV+P + +  +  E+ ++        +VS ++E
Sbjct: 441 INFVVPADAKFLKETEKYYQTQIVEMPLDVSQIYE 475



 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P ++ KD +  AQ+G+GKT  F +A    +    D  SP +   AL
Sbjct: 53  GFEKPSPIQQCGIIPIIKGKDTIAQAQSGTGKTATFSIATLQVI----DTSSPHTQ--AL 106

Query: 79  AIAPTRELAVQ 89
            +APTRELA Q
Sbjct: 107 ILAPTRELAQQ 117


>gi|15239187|ref|NP_201391.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861887|sp|Q9SB89|RH27_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 27
 gi|2827700|emb|CAA16673.1| DEAD box ATP dependent helicase protein [Arabidopsis thaliana]
 gi|9759574|dbj|BAB11137.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|16649121|gb|AAL24412.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|24899721|gb|AAN65075.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|332010738|gb|AED98121.1| DEAD-box ATP-dependent RNA helicase 27 [Arabidopsis thaliana]
          Length = 633

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 187/350 (53%), Gaps = 14/350 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +++ E G+  +T +Q   + P +  +DVL +A+TGSGKT+AF L  A  LL    +F+P 
Sbjct: 167 KSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAF-LIPAVELLYRV-KFTPR 224

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    L I PTRELA+Q   V +EL   +++T   V   IGG     E   L  G +++V
Sbjct: 225 NGTGVLVICPTRELAIQSYGVAKELLKYHSQT---VGKVIGGEKRKTEAEILAKGVNLLV 281

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH+    G    +LK +V+DEAD +L+  F +D++ IL+  PK R+  +FSAT
Sbjct: 282 ATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSAT 341

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNIL-RYHGAK 245
            S  +  LA+      V +++    ++ ++  ++    +V  + R   ++  L R+ G K
Sbjct: 342 QSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLKRFQGKK 401

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST  S     ++     F  + + G + Q +R+            + + T+VAA
Sbjct: 402 KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAA 461

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI-PQNMQ 353
           RG+D P ++ ++  +   NP + +HR GRT R  G KG ++ V+ PQ ++
Sbjct: 462 RGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELK 511


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 193/373 (51%), Gaps = 15/373 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----LA 59
           FE+ P+V+ +++ + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 223 FEHYPEVL-KSIKKAGFQRPTPIQSQAWPIVLQGMDLIGVAQTGTGKTLSYLIPGFIHLD 281

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S  ++  +R  P      L + PTRELA+QV  E    Y+  G+      GG +   + +
Sbjct: 282 SQPISREERNGPG----MLVLTPTRELALQVEAECS-KYSYKGLKSVCVYGGGNRKEQIQ 336

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  I++ TPGRL D    K +N+  +  +VLDEAD+MLDLGF   I  IL      
Sbjct: 337 HITKGVDIIIATPGRLNDLQMNKCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPD 396

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-I 238
           R+ +M SAT    I  LA++Y K+ + V + + +        + ++V   +    ++   
Sbjct: 397 RQTVMTSATWPHTIRQLARSYLKEPMIVYVGTLDLVAVHTVKQDIIVTTEEEKRTLIQEF 456

Query: 239 LRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           LR    ++ AI+F S +      +  L+     V +L G   Q +R  AL   R GR ++
Sbjct: 457 LRNLAPEDKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKI 516

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+ D+  V + +   N E  +HR GRTGRAG+ G+SV ++ Q   + A 
Sbjct: 517 LIATDLAARGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAGKTGVSVTLMTQADWKIAT 576

Query: 358 RLFR---EANVSV 367
            L +    AN SV
Sbjct: 577 ELIKILERANQSV 589


>gi|114580556|ref|XP_001154671.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 2 [Pan
           troglodytes]
          Length = 675

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 199/352 (56%), Gaps = 15/352 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 309

Query: 133 GRLCDHIRGKGL------NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           GRL DH++ + +       I +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FS
Sbjct: 310 GRLLDHMQVRDVVLVSLSCIKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFS 369

Query: 187 ATISPAITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYH 242
           AT +  +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +
Sbjct: 370 ATQTRKVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKN 428

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TD
Sbjct: 429 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTD 488

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 489 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 540


>gi|71027499|ref|XP_763393.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350346|gb|EAN31110.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 451

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 192/373 (51%), Gaps = 25/373 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P+++  A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  E  
Sbjct: 63  PEIL-RAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEAE 121

Query: 66  ------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
                  D   P      + I+ TRELA Q+  E +        V   V  GGV + ++ 
Sbjct: 122 EGKRDAEDNVKPVCRVSCIGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKDV 181

Query: 119 RDLQNGA---HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILD 174
             L++ A   HI+VGTPGRL   ++ K LN+  +K  VLDE D+ L+ L  R D++ I  
Sbjct: 182 AMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQDVQSIFL 241

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRD 232
           S+PKK++++ FSAT++  I  L K + +  V V +  E++   H  + Y  V +A SD++
Sbjct: 242 STPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQY-YVKLAESDKN 300

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++L        I+F  + +       +L E  F  +A+   L Q ER N     ++
Sbjct: 301 RKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERINRYTQFKN 360

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--- 349
              R+ +ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +    
Sbjct: 361 FDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAITFVSSPE 420

Query: 350 -----QNMQRRAE 357
                +++Q+R E
Sbjct: 421 DSSQLEDVQKRFE 433


>gi|302656972|ref|XP_003020220.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291184030|gb|EFE39602.1| ATP-dependent RNA helicase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 528

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 185/343 (53%), Gaps = 22/343 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q++ +   ++ +D +  ++TGSGKTVAF   +        D F       A+ + PT
Sbjct: 123 TAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILHKW--SEDPF----GIYAVILTPT 176

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+  G
Sbjct: 177 RELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKSSG 236

Query: 144 ----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK--RRMLMFSATISP--- 191
               + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P   
Sbjct: 237 EDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALPPSSDRQTLLFTATVTPEVR 296

Query: 192 AITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG--AKNA 247
           A+ ++ +   K  + V  I++EN        +  L V L+ R+  +  +L   G  +K+ 
Sbjct: 297 ALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNHREAFLQVLLSTEGNSSKST 356

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAARG
Sbjct: 357 IIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARG 416

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 417 LDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 459


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|293374562|ref|ZP_06620881.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|292646811|gb|EFF64802.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
          Length = 379

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 182/352 (51%), Gaps = 15/352 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TS+Q+  +   L  +DV+  + TGSGKT+AF   L   +               L +APT
Sbjct: 27  TSIQQEAIPVILNHQDVIAQSHTGSGKTLAFVAPLFKKIDTTKREMQ------VLILAPT 80

Query: 84  RELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            EL +Q+  +++ L A + + V     IGG ++ ++ + L+   HI+ G+ GR+ + I+ 
Sbjct: 81  HELVMQIDAQIKLLAANSEIPVTSTTIIGGANIDKQIKKLKEKPHIITGSCGRILELIKK 140

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +    LK ++LDEAD +LD      I+ I+ ++ + R++ +FSA+IS    TLA +  
Sbjct: 141 KKITAHTLKTIILDEADSLLDNTNTKTIQDIIKTTLRDRQLCLFSASISENTQTLATSLM 200

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           K+ V +  A     + +I +  +     D+   +  ++     + A++F +   S+    
Sbjct: 201 KEPVILKTADAVEMNPNIAHFYLKGERRDKFELLRKLIVAENPERALIFVNQNDSMQEIA 260

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           + L  H  +   + G + ++ER  AL + R G+ ++ +++D+ ARG+D+P++  +IH + 
Sbjct: 261 EKLNYHQKETFVMRGNIQKEERKRALDLFRSGKIKLLVSSDLTARGLDIPEVTHIIHLDC 320

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREANVS 366
            +NP   LHR+GRT R    G S+ +I        +  Q++    F+E  VS
Sbjct: 321 PANPNEYLHRAGRTARGYASGKSICIITDKDLSTLKKYQKKFNIQFKEMKVS 372


>gi|297584627|ref|YP_003700407.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143084|gb|ADH99841.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 432

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 182/351 (51%), Gaps = 12/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + G    T +QE I+    + +DV+  +QTG+GKT+AF L L +       R  P 
Sbjct: 16  EALKDEGIDLPTEIQERIIPAVNKGEDVIGRSQTGTGKTLAFLLPLLT-------RLDPE 68

Query: 73  SAPLALAI-APTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                + I APTRELA Q+    +    +++T V   + +GG    R     +   HIV+
Sbjct: 69  KKETQIVITAPTRELASQLYDVCKRYASFSETTVTSQLIVGGTDRKRMLEKAKQRPHIVI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D ++   LN   + + V+DEAD+MLD+GF ++++ I     +  ++L+FSATI
Sbjct: 129 GTPGRILDMMKEAALNPMTVSSFVVDEADQMLDMGFLEEVDRIASMMNENLQLLVFSATI 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             ++    K Y      V +  +    S+I +  +     DR   +V I +      AI+
Sbjct: 189 PESLKPFLKKYMNHPKEVEVQPKQSAPSEISHWLIPDRDRDRKEILVTIAKDLNPFLAII 248

Query: 250 FCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           F +T+ S    F ++LAE  F V  + G++  ++R   L+ ++    +  +ATD+ ARGI
Sbjct: 249 FTNTKESADEVFKRMLAEG-FNVDCIHGDIQPRQRKKVLKKLQTAEIQYLVATDLVARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+  +  +I+ E+    E  +HR GRT RAG  G ++    ++ Q   E+L
Sbjct: 308 DVKGVSHIINFEIPKELEYYVHRVGRTARAGWDGTAITFFGRSDQPSIEKL 358


>gi|50309183|ref|XP_454597.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660391|sp|Q6CN92|SPB4_KLULA RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|49643732|emb|CAG99684.1| KLLA0E14367p [Kluyveromyces lactis]
          Length = 596

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 132/434 (30%), Positives = 207/434 (47%), Gaps = 24/434 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDR 68
           I  A+   G+  +T VQ + +      KDV+V + TGSGKT+AF + +   L+ E  N  
Sbjct: 18  IRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKEEANSA 77

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE----WLYAKTGVVVAVCIGGVSVHRERRDLQ-- 122
               S   +L I+PTRELA Q+   +E    +       + +  + G S    R D+   
Sbjct: 78  KFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSF 137

Query: 123 --NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N   I+VGTPGR+ D ++   +  +    VVLDEAD++LDL F+ D+E IL   PK+R
Sbjct: 138 TDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKMLPKQR 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSATI  A   + K   ++ V+V + S +   S +    +++   D+   ++ +L 
Sbjct: 198 RTGLFSATIESAGAQIFKTGMRNPVKVAVKSNSSAPSSLSINYIVIPPKDKLQLLLTLLN 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL---------FQVVALSGELSQQERSNALQMMR 291
            +  K  IV+  T  SV+ F   +  HL          ++ +L G+L  Q R   L    
Sbjct: 258 NYRFKKCIVYFPTCISVTYFYAFI-NHLKELNLIQDDLKLFSLHGKLQTQSRMKTLDSFT 316

Query: 292 DGRAR-VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
                 V   TDVAARGID+PD++LVI  +  ++ +  +HR GRTGRA R G ++  + +
Sbjct: 317 SNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNE 376

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             +          NV +  E   SVE     +  +I  D +  D  + D      V   K
Sbjct: 377 GREEDYVPFLEVKNVKLEEE---SVELKGVENLTKIFHDWILHDRARFDHSVRAYVAFIK 433

Query: 411 HDPEKIAAGFLRIH 424
           +  +  A+   R H
Sbjct: 434 YYSKHTASSIFRFH 447


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 180/339 (53%), Gaps = 14/339 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F + +   +   L E          
Sbjct: 15  GFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDPSLMETQ-------- 66

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q  + L  +     V    C+GG S+  + R L  G  +V GTPGR+
Sbjct: 67  -ALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQVVSGTPGRV 125

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I  + L   ++K +V+DE DEML+ GF++ +  I    P   ++++ SAT+   +  
Sbjct: 126 YDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSATMPKEVLD 185

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  + V++ +  +      I    V V   + + + + ++        A++FC+TR
Sbjct: 186 MTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTITQAVIFCNTR 245

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L E  F V ++ G++ Q+ER   ++  R G +RV IATDV  RG+D+  + 
Sbjct: 246 RKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRGLDVQQVS 305

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           LVI+ +L ++ E  +HR GR+GR GRKG+ + FV  +++
Sbjct: 306 LVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDI 344


>gi|295702531|ref|YP_003595606.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800190|gb|ADF37256.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 401

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 197/368 (53%), Gaps = 9/368 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           +  E +   + EA  + G+   T++Q   ++  L  KDV+  + TG+GKT+A+       
Sbjct: 3   QFIETLQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAY------- 55

Query: 62  LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL    R  P  + + A+ +A + EL +Q+  E++     +G+  A  IGG ++ R+   
Sbjct: 56  LLPVLHRIQPGPSHIQAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLEK 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   +I+VGTPGRL + I+ K L +  +K +V+DEAD++        ++ I+  +   R
Sbjct: 116 LKKRPNIIVGTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHVQTVQQIVKMALSDR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT+S    +LAK+     + + +  +    S +++  +     D+ + +  ++R
Sbjct: 176 QILVFSATVSERTKSLAKDMMNHPLEIEVGRDELPASKVEHVYIKSEARDKVDVLRKLVR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K A+ F     ++  F + L     +  +L  E  +++R+  ++  R G   V +A
Sbjct: 236 QEQMK-ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLLA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  VIH ++  + +  +HRSGRTGR+G +G  + ++ +  +R  +++ 
Sbjct: 295 TDVAARGLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQIA 354

Query: 361 REANVSVV 368
           RE  +S+V
Sbjct: 355 RELQLSLV 362


>gi|260774135|ref|ZP_05883050.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
 gi|260611096|gb|EEX36300.1| ATP-dependent RNA helicase RhlE [Vibrio metschnikovii CIP 69.14]
          Length = 383

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 143/269 (53%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA Q+   +        +  AV  GGV V+ + + +  GA I+V TPGRL 
Sbjct: 3   ALILTPTRELAAQIQESILVYGRHLPLSSAVVFGGVKVNPQMQRMCKGADILVATPGRLM 62

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D      +    L+ +VLDEAD MLD+GF  DI  IL   P++R+ L+FSAT S  I  L
Sbjct: 63  DLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPERRQNLLFSATFSAEIREL 122

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           AK    + V ++++  N     ++       +  +   +V +++    +  +VF  T+  
Sbjct: 123 AKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQVLVFMRTKHG 182

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
            +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AARGID+P L  V
Sbjct: 183 ANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVATDIAARGIDIPQLPQV 242

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ EL    E+ +HR GRTGRAG  G ++
Sbjct: 243 VNFELPKVAEDYVHRIGRTGRAGEVGKAI 271


>gi|308456140|ref|XP_003090535.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
 gi|308262642|gb|EFP06595.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
          Length = 745

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 10/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L E  Y   T +Q   +   L   DV+ +A+TGSGKT+A  + +   L     R+SP 
Sbjct: 88  EGLKENEYTKPTEIQRDTIAHSLSGADVVGAAKTGSGKTLALVIPILEALW--RARWSPE 145

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I+PTRELA+Q    +  +    G    + IGG  V  E+  + +G +I+V TP
Sbjct: 146 YGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVSYEKNRI-SGINIIVCTP 204

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL  H+   + +N   L+ +VLDEAD MLD+GF   +  I+++ P +R+ L+FSAT + 
Sbjct: 205 GRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFAKQLNSIVNNLPSERQTLLFSATQTR 264

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  L +    D V V++  EN   +  D      V+V    + N + + +  H  K ++
Sbjct: 265 NVKDLCRVCTNDPVFVSV-HENASAATPDNLKQSYVIVEEESKINTLWSFIEAHKKKKSL 323

Query: 249 VFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +F S+       T+V ++      V+ L G ++Q++R        + +A V IATDVA+R
Sbjct: 324 IFVSSCKQARFLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKFDEAKAAVLIATDVASR 383

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++
Sbjct: 384 GLDFEHIDWVIQMDCPAQIDDYIHRVGRSARMDDSGNSLLMV 425


>gi|298484223|ref|ZP_07002388.1| ATP-dependent RNA helicase [Bacteroides sp. D22]
 gi|298269636|gb|EFI11232.1| ATP-dependent RNA helicase [Bacteroides sp. D22]
          Length = 444

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 19/346 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAEEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSSSSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S  ++
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTSYLIL 338


>gi|145228425|ref|XP_001388521.1| ATP-dependent RNA helicase MSS116 [Aspergillus niger CBS 513.88]
 gi|134054610|emb|CAK43455.1| unnamed protein product [Aspergillus niger]
          Length = 548

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 199/399 (49%), Gaps = 45/399 (11%)

Query: 13  EALSERGYVNLTSVQEAILN--PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +AL+  G+ ++T VQ+ +L   PD R  D LV A+TG+GKT+AF L     LL  N   +
Sbjct: 26  QALNVLGFTHMTPVQQRVLTELPDWRS-DCLVQAKTGTGKTLAFLLPTLHCLL--NGSMA 82

Query: 71  PASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVVVA--VCIGGVS-VHRERRDLQNGAH 126
           P    +A L + PTRELA Q+ +  + L ++  V +   + +GG +      R ++    
Sbjct: 83  PPRGQVAVLIVTPTRELAQQIAKSCDQLTSQMAVPLKCDIAVGGTARASAFSRFMREAPS 142

Query: 127 IVVGTPGRLCDHIRGK--GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---R 181
           ++V TPGRL D++      + +S++K ++LDEAD ML+ GF  D++ I+   P K    +
Sbjct: 143 VLVATPGRLKDYLSEPEAAIKLSNIKTLILDEADTMLESGFLADVKHIIRHIPPKSAGWQ 202

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------------YRAVLVALS 229
            + FSAT+ P +        +D V V +       S ID            Y  ++ +++
Sbjct: 203 GMCFSATLPPKV--------RDVVSVVLKPGYSSISTIDENETPTHERVPQYHVLMPSVA 254

Query: 230 DRDNAIVNILRYHGAKNA---IVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERS 284
           D    + ++L+    KN+   IVF  T   VS F    +  L    V  +   LSQ  R+
Sbjct: 255 DSFTTLASVLQLE-TKNSSKIIVFGVTANMVSLFAAAFSRGLTKLSVFEIHSRLSQSART 313

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
                 ++  A +  A+DV  RG+D P+++LVI   L +N E  +HR GRT RAG  G +
Sbjct: 314 KTTAQFKEAAAGILFASDVIGRGMDFPNVDLVIQVGLPTNGEQYVHRVGRTARAGNDGRA 373

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           + ++ +     AE  F   N  +  +P P  +AI E  A
Sbjct: 374 IILLTE-----AETFFLRNNRHLPIQPHPQTDAIIEAAA 407


>gi|291166420|gb|EFE28466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Filifactor alocis
           ATCC 35896]
          Length = 381

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 203/369 (55%), Gaps = 27/369 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP- 71
           AL +    N T +Q  ++ P +R+  D+L  AQTG+GKT+AF + +  ++        P 
Sbjct: 15  ALQDMYIENPTDIQSKVI-PKMRKGNDILAHAQTGTGKTLAFLIPILESI--------PD 65

Query: 72  -ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +S   +L I PTREL+ Q+   L++      + V    GG ++  + + L +   IVVG
Sbjct: 66  ISSGIKSLIIVPTRELSNQITDVLKYFQKYRSLSVVNASGGHNITTQIQKLSSNTDIVVG 125

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +R   +N  ++ + V+DE D++L  GF +D+  +++ +P+K+++ MFSAT+S
Sbjct: 126 TPGRVLDLLRNGNINFKNIDSFVIDEMDQILAFGFLEDVILLMNKTPRKKQVCMFSATVS 185

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK----N 246
             +  L+K +  + + +   +  R    +D  + L+ +  +D+  ++ L Y   K     
Sbjct: 186 QDVKKLSKQFMLNPIYL---TAERGEVVLDNISQLI-VQTKDSRKLSSLMYSIEKINPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++FC+++ +  +       H ++ +  L GE+SQ +R N L+  R+ + +  I TD++A
Sbjct: 242 CMIFCNSKKNAEKLYSDFIHHQYKNMELLHGEMSQNKRENILKKFRELKVQYLITTDLSA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ----NMQRRAERLFR 361
           RG+++  +  VI+ ++  + E  +HR GRTGR  + G ++  + +    NM++  +R+  
Sbjct: 302 RGMNIEGVSHVINYDIPRDVEYYIHRIGRTGRMNQIGYAISFVTEKDIANMKKIQKRI-- 359

Query: 362 EANVSVVWE 370
           +  + VV++
Sbjct: 360 KKTIPVVYD 368


>gi|149370417|ref|ZP_01890106.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355968|gb|EDM44525.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 450

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 186/353 (52%), Gaps = 13/353 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + + G  + T +QE   +     KD++  AQTG+GKT A+ L +  TL     ++S   
Sbjct: 16  GIDDLGITHPTPIQEQSFSVIKAGKDMVGIAQTGTGKTFAYMLPVLETL-----KYSREI 70

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL VQV  E+E L     V V    GGV+++  ++ +  G  +VV TPG
Sbjct: 71  NPRVLVLVPTRELVVQVVEEIEKLGKYLSVRVTGVYGGVNINTHKQAVAQGCDVVVATPG 130

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D    + +++ ++K +++DE D MLDLGFR  I  I +  P++R+ ++FSAT++  +
Sbjct: 131 RLYDLALSRAVSLKNIKKLIIDEVDVMLDLGFRFQITNIFELLPERRQNILFSATMTDDV 190

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGA-KNAIVFC 251
             L  ++ K   ++++A       +I+ ++ +V     + N + ++L+   A    +VF 
Sbjct: 191 ENLIDDFFKSPEKISVAVSGTPLDNIEQQSYVVKNFYTKANLLNHLLKDKEAFTKVLVFV 250

Query: 252 STRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             +       +V+ + +  QV  +    +Q  R  +++    G+ R+ I+TDV +RG+DL
Sbjct: 251 PNKRQADTLYQVVDDFYPDQVSVIHSNKTQNYRLRSIENFNAGKKRILISTDVMSRGLDL 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
             +  V++ ++    EN +HR GRTGRA  +G S+           E L +EA
Sbjct: 311 DRITHVVNMDVPRYAENYMHRIGRTGRAEAQGKSIL-----FSTEKEALLKEA 358


>gi|126175510|ref|YP_001051659.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998715|gb|ABN62790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 443

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 181/334 (54%), Gaps = 9/334 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL------A 77
           T VQ+  +   L  +D+L  AQTGSGKT+AFGL L   LL +       +  +      A
Sbjct: 36  TRVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLLQQLLLQQQTQLQGAKSVQSPNAQA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV   L+ + ++    +++ +  GGV +  +  +L     ++V TPGRL
Sbjct: 96  LVLVPTRELALQVTEALQAVASQLSASLIIQLLCGGVPLEDQLVELATKPQVLVATPGRL 155

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D  +   +++  +K +VLDEAD +L++GF  D++ ++   PK ++  +FSAT+  A+ T
Sbjct: 156 LDLCKQSHVSLDSIKHLVLDEADRLLEMGFWPDVQKLMAFMPKLKQTSLFSATLPEALDT 215

Query: 196 LA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           LA K    + +RV     N    +I+ +  LV    +   ++ +L+ +     +VF S R
Sbjct: 216 LAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGSKAQVLIALLKQYQWAQVLVFISAR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  K LA+   +V AL GE  Q  RS  L   +  R +V +ATD+ ARGI +  L 
Sbjct: 276 DDADAVAKRLAKAGMKVAALHGEKDQAVRSQTLADFKANRIQVLVATDLMARGIHVDALP 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 336 VVINLDLPMSAPVYVHRIGRTARAGEKGLAISLV 369


>gi|240281972|gb|EER45475.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H143]
          Length = 542

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/375 (31%), Positives = 203/375 (54%), Gaps = 18/375 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A 
Sbjct: 166 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL 225

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 226 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAGKLT 280

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 281 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 340

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           + ++FSAT +  +  LA+ + ++  + +N+    ++HS ++       + D D     + 
Sbjct: 341 QTMLFSATQTTKVEDLARISLRQGPLYINV-DHRKEHSTVEGLEQGYVICDSDKRFLLLF 399

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +    
Sbjct: 400 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQG 459

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +  
Sbjct: 460 TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVG 518

Query: 356 AERLFREANVSVV-W 369
             +  +EA V VV W
Sbjct: 519 FLKHLKEARVPVVDW 533


>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 562

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 10/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + +AL   G+   T++Q       L  +D++  A+TGSGKT+ F L  +   ++  
Sbjct: 154 FPDFLIDALYRAGFTEPTAIQVQGWPVALSGRDMIGIAETGSGKTLGF-LLPSMVHISAQ 212

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+ L +APTREL  Q+  +         +      GGV    ++  L+NG  
Sbjct: 213 PRLRYGDGPICLILAPTRELVEQIREQANRFGNILRIRNTAVYGGVPKRSQQISLRNGVE 272

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I +  PGRL D +     N+S +  +VLDEAD MLD+GF   I  ++      R+ L++S
Sbjct: 273 ICIACPGRLIDFLEEGCTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWS 332

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSD-----RDNAIVNILR 240
           AT    +  LA++  +++ V +N+ S +   +  + +  +  + +     R    +N + 
Sbjct: 333 ATWPKEVQKLARDLCREEPVHINVGSIDTLKASHNIKQYIDVVDEYQKKGRLRMFLNQVM 392

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++FC T+      T+ L    +  + + G+  Q+ER+  L   R+G + + IA
Sbjct: 393 NSPTSKVLIFCETKKGADILTRELRLEGWPALCIHGDKKQEERTWVLNEFRNGTSPIMIA 452

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--- 357
           TDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G+S+     +  R A    
Sbjct: 453 TDVAARGLDVKDITFVVNYDFPNQMEDYIHRIGRTGRAGASGVSLSFFTADKCRLANDLV 512

Query: 358 RLFREA 363
           R+ REA
Sbjct: 513 RVLREA 518


>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 790

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 198/383 (51%), Gaps = 8/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL+   +   T +Q   +   L  +D+L SA TGSGKT AF + +   L   
Sbjct: 210 NLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY- 268

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQN 123
            DR    +A   L + PTRELAVQ     + L  K G+ V  A+ +GG+S++ +   L+ 
Sbjct: 269 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 328

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+       +S L  +V+DEAD ML+ GF D++E I+ + P+ R+ 
Sbjct: 329 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 388

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY 241
           ++FSAT++ ++  L K      +RV +  +      +    V +   D R  +++ + + 
Sbjct: 389 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRSDDSRSPSLLALCKR 448

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  ++A   +   V      +   L G L+Q++R  AL   +       +AT
Sbjct: 449 TIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTVDYLLAT 508

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ ++        HR GRT RAGRKG S+ ++ +  ++  +   +
Sbjct: 509 DLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKMLKAAIK 568

Query: 362 EANVSVVWE---PAPSVEAIRER 381
           +A    V     P+ +V A++E+
Sbjct: 569 QAEADQVRHRIIPSEAVTAMKEK 591


>gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 453

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 177/341 (51%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  E+ R+ 
Sbjct: 14  IRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAI-DEDARYV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNGAHI 127
            A     +  AP+RELA Q+ R    L   +G+ +A+        R+R   R  QN   +
Sbjct: 73  QA-----IVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNKPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVNLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 180/339 (53%), Gaps = 14/339 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---LAENDRFSPASAP 75
           G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F + +   +   L E          
Sbjct: 15  GFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDPSLMETQ-------- 66

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q  + L  +     V    C+GG S+  + R L  G  +V GTPGR+
Sbjct: 67  -ALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQVVSGTPGRV 125

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D I  + L   ++K +V+DE DEML+ GF++ +  I    P   ++++ SAT+   +  
Sbjct: 126 YDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVSATMPKEVLD 185

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  + V++ +  +      I    V V   + + + + ++        A++FC+TR
Sbjct: 186 MTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTITQAVIFCNTR 245

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V      L E  F V ++ G++ Q+ER   ++  R G +RV IATDV  RG+D+  + 
Sbjct: 246 RKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWGRGLDVQQVS 305

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           LVI+ +L ++ E  +HR GR+GR GRKG+ + FV  +++
Sbjct: 306 LVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDI 344


>gi|299115404|emb|CBN74235.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 584

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 191/378 (50%), Gaps = 20/378 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQE---AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           +P  + + ++ RG+   T +Q     +LN     +DV+  A+TGSGKT+ F L   S + 
Sbjct: 167 MPAEVMKYVTLRGWDKPTLIQAHCWPVLNAG---RDVIGIAETGSGKTLGFSLPAMSKIF 223

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                   +  P  L +APTRELA+Q    +       G+      GGV    ++  L  
Sbjct: 224 KNMKAGKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQKIALGG 283

Query: 124 GAHIVV-----GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SS 176
           G           TPGRL D +     ++S + ++VLDEAD MLDLGF  D+  I+   + 
Sbjct: 284 GRGGGCVQVVVATPGRLKDLVGEGACDLSKVTSLVLDEADRMLDLGFEQDVRDIIGYCAG 343

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAI 235
           P KR+  MFSAT   +I  LA  +  D V+V + +++   +  ++    +V   +RD  +
Sbjct: 344 PSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERERDGKL 403

Query: 236 VNILR--YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + +L   +   KN  +VF   +   +R  + L  + F  VA+ G+  Q +R  AL   + 
Sbjct: 404 LRLLATCHKSRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERALGQFKS 463

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               + +ATDVAARG+D+PD+E VI+       E+ +HR GRTGRAG+KG+S     Q  
Sbjct: 464 KERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTYFHQGD 523

Query: 353 QRRAERL---FREANVSV 367
           + RA  L    ++AN SV
Sbjct: 524 KARAGELVNVLQDANQSV 541


>gi|26344732|dbj|BAC36015.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 196/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + +   ++    +F P 
Sbjct: 182 KAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKL--KFMPR 239

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 240 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATP 299

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 300 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARRQTMLFSATQTR 359

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  ++++ + +D   +  +V  S++   ++   L+ +  K  
Sbjct: 360 KVEDLARISLKKEPLYVGV-DDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV 418

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVAARG
Sbjct: 419 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGILLCTDVAARG 478

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 479 LDIPEVDWIVQYDPPDDPKECIHRVGRTARGLNGRGHALLILRPEEL 525


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 463

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 190/397 (47%), Gaps = 26/397 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L   D++  AQTG+GKT A+ L +   +     +++   
Sbjct: 19  AIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILMKI-----KYAQGH 73

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P A+   PTREL +Q+   ++ L   T + +    GG+    ++  LQ G  I+V TPG
Sbjct: 74  NPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHLQKGVDIIVATPG 133

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R  D    + + +  +K +VLDEAD+M+D+GF   +  +L+  P+KR+ L+FSAT+S  +
Sbjct: 134 RFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQNLLFSATMSERV 193

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAI 248
             L + + +  +++ +  +    + I  +   V         +++L Y          AI
Sbjct: 194 ERLTEEFLEYPMKIEVTPQATPATLISQKLYKVP---NFKTKIHLLEYLIRKDESVTRAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +F  T+ S     K +          +     Q  R NA+   +DG  ++ +ATDVAARG
Sbjct: 251 IFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKILVATDVAARG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ ++  VI+ ++    ++ +HR GRTGRA   G+++    +      E++ +   + +
Sbjct: 311 IDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEKIEKIIRMQI 370

Query: 368 VWEPAP------------SVEAIRERDAQRILQDPLF 392
             E  P            S E  RE D  +  +DP +
Sbjct: 371 PVEELPAAVEITETGFEESQEFARELDFYKKKEDPTY 407


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|315637076|ref|ZP_07892299.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478612|gb|EFU69322.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 372

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 151/273 (55%), Gaps = 2/273 (0%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRL 135
            L + PTRELA Q+G+ ++  YAK   +  + I GGVS   + + L NG  I+V T GRL
Sbjct: 21  TLILVPTRELATQIGKVIDD-YAKYLDIKRLAIFGGVSSKEQEKKLSNGIDILVSTSGRL 79

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            +HI+ K +N+S +  VV+DE D MLD+GF +D+E IL +  + R+++MFSAT++  +  
Sbjct: 80  LEHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNRQIMMFSATLNQNVKK 139

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LAK +  D V + +A +      +D + VLV    +   +  ++        +VF + + 
Sbjct: 140 LAKEFLSDPVVIEVAKQRSSVKIVDQQIVLVDEDKKTELLSYLIGSRNYSQVLVFVNMKK 199

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L         + G++ Q  R+ AL+  + G  RV +ATD+AARGID+  L +
Sbjct: 200 EADDLVAHLNLDGLPAECIHGDVRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLPV 259

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V++  L     +  HR GRTGRAG  G ++ ++
Sbjct: 260 VVNFALPETITDYTHRIGRTGRAGNAGTAITLL 292


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 271 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 329

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 330 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 389

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 390 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 449

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 450 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 507

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 508 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 567

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 568 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 600


>gi|156084736|ref|XP_001609851.1| DEAD box RNA helicase [Babesia bovis T2Bo]
 gi|154797103|gb|EDO06283.1| DEAD box RNA helicase, putative [Babesia bovis]
          Length = 714

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 185/376 (49%), Gaps = 35/376 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+P  +  A+ + G+ + T +Q   +   L  +D++  A+TGSGKTVAF L + + +  L
Sbjct: 303 NLPSELLRAIKDAGFKSPTPIQMQAIPIGLGMRDLIGLAETGSGKTVAFVLPMLTYVKAL 362

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +  +    P AL +APTRELA Q+  E     A       + +GG SV ++  +L+N
Sbjct: 363 PPLNEDTLQDGPYALTLAPTRELATQIHAETVKFSAFCSCRTVLVVGGHSVDQQGFELRN 422

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GA IV+GTPGR+ D +      ++    V+LDEAD M+D+GF + +  ILD  P      
Sbjct: 423 GAEIVIGTPGRIKDCLDRSYTVLTQCNYVILDEADRMIDMGFEEIVNDILDCIPTSNLKD 482

Query: 178 ------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                             K R   MFSAT+  A+  L K Y +  V V+I         I
Sbjct: 483 LDENLALQQELSTKAGYRKYRITQMFSATMPAAVEKLTKKYLRSPVIVSIGDVGSGKKSI 542

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL----FQVVALS 275
             R   +    +   + ++L  H  +  I+      ++ +   V+A H+     + ++L 
Sbjct: 543 TQRFEFITEHRKKQKLQDLL--HTLEGQIIVF---VNMKKVADVVARHISNMNLRAISLH 597

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q  R  AL+  + G   + +ATDV  RG+D+  +  VI+ ++  + E   HR GRT
Sbjct: 598 GGKTQDIREGALESFKAGDFDILVATDVVGRGLDVKGVTAVINFDMPKDIETYTHRIGRT 657

Query: 336 GRAGRKGMSVFVIPQN 351
           GRAG KGM++  + ++
Sbjct: 658 GRAGAKGMAISFVTED 673


>gi|255559531|ref|XP_002520785.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539916|gb|EEF41494.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 592

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 193/366 (52%), Gaps = 35/366 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G+   T VQ A +    R KDV V A TGSGKT+AF + L   L          S
Sbjct: 32  ALTQAGFEYCTPVQAATIPLLCRYKDVAVDAATGSGKTLAFVVPLVEIL-------RRLS 84

Query: 74  APLAL------AIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-GA 125
           +P+ L       ++PTREL+ Q+    + ++   + V   + +GGV V  + + ++  GA
Sbjct: 85  SPIKLHQVMGIILSPTRELSSQIYNVAQPFIETLSNVKSMLLVGGVDVKADVKKIEEEGA 144

Query: 126 HIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++GTPGRL D + R   L+  +L+ ++LDEAD +LD+GF+  I  I+   PK RR  +
Sbjct: 145 NILIGTPGRLFDIMERVDILDFRNLEVLILDEADRLLDMGFQKQITSIISRLPKLRRTGL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQ--------------HSDIDYRAVLVALSD 230
           FSAT + A+  LAK   ++ VRV + ++ +                S +    +      
Sbjct: 205 FSATQTEAVEELAKAGLRNPVRVEVRAQTKSLNESASSQLSSSKTPSGLQLEYLECEADM 264

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL----AEHLFQVVALSGELSQQERSNA 286
           + + +V++L  + +K  IV+  T A V  +  VL    A   F ++ L G++ Q  R  A
Sbjct: 265 KPSHLVSLLNKNKSKKIIVYFMTCACVDYWGVVLPRLTALKDFSLIPLHGKMKQTARDKA 324

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-V 345
           L       + + + TDVAARG+D+P ++ ++  +   +P   +HR GRT R GR+G + V
Sbjct: 325 LASFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGRQGSAIV 384

Query: 346 FVIPQN 351
           F++P+ 
Sbjct: 385 FLLPKE 390


>gi|325088110|gb|EGC41420.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H88]
          Length = 635

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/373 (31%), Positives = 202/373 (54%), Gaps = 17/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A 
Sbjct: 162 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL 221

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 222 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAGKLT 276

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 277 KGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDR 336

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           + ++FSAT +  +  LA+ + ++  + +N+    ++HS ++       + D D     + 
Sbjct: 337 QTMLFSATQTTKVEDLARISLRQGPLYINV-DHRKEHSTVEGLEQGYVICDSDKRFLLLF 395

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +    
Sbjct: 396 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQG 455

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +  
Sbjct: 456 TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVG 514

Query: 356 AERLFREANVSVV 368
             +  +EA V VV
Sbjct: 515 FLKHLKEARVPVV 527


>gi|317575817|ref|NP_001187807.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
 gi|308324021|gb|ADO29146.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
          Length = 426

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 184/351 (52%), Gaps = 22/351 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+V+  A+ + G+ + + VQ   +   +   DVL  A++G GKT  F +A    L  E +
Sbjct: 52  PEVL-RAIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEEE 110

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA- 125
             +       L +  TRELA Q+ +E E +      + V V  GG+ + R+      GA 
Sbjct: 111 GMTRV-----LVLCHTRELAYQISKEYERFSKYMPKIKVGVFFGGMPLRRDIESFGKGAP 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLM 184
           HIVVGTPGR+ D IR K L + ++K  ++DE D+MLD L  R D++ I   +P+ ++++M
Sbjct: 166 HIVVGTPGRILDLIRNKALKLDNIKHFIIDECDKMLDTLDMRRDVQDIFRQTPRSKQVMM 225

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVN 237
           FSAT+S  I  + +N+ +D + + I +++       RQH       V V  ++++  +  
Sbjct: 226 FSATMSKDIRPVCRNFMQDPLEIFIDNDSKLTLHGLRQH------YVKVKENEKNRKLFE 279

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        I+F  +        ++L +  F  +A+   +SQ+ER    Q  ++ + R+
Sbjct: 280 LLDELQFNQVIIFVKSVQRCIALCQLLVDQNFPAIAMHRSMSQEERLERYQAFKNFQKRL 339

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +AT++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++  I
Sbjct: 340 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 390


>gi|255546147|ref|XP_002514133.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223546589|gb|EEF48087.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 764

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D ++      A 
Sbjct: 410 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGILQQLD-YALVECQ-AX 463

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H+VVGTPGR+ D 
Sbjct: 464 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 523

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 524 LRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITR 583

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    V++ +  +      I    V V   + +   + ++        +++F +TR  V
Sbjct: 584 KFMNKPVKILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 643

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 644 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 703

Query: 318 HAELSSNPENLLH 330
           + +L + PEN LH
Sbjct: 704 NYDLPTQPENYLH 716


>gi|21068659|emb|CAD21558.1| HEL protein [Chironomus tentans]
          Length = 421

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 187/349 (53%), Gaps = 12/349 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + ++VQ   +   +   D+L  A++G GKT  F LA    L   ++
Sbjct: 48  PEIL-RAIVDCGFEHPSAVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPTDN 106

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA- 125
           +         L +  TRELA Q+ +E E +    +GV VAV  GG+ + ++   L+    
Sbjct: 107 Q------AYVLVMCHTRELAFQISKEYERFSKYMSGVKVAVFFGGMPIQKDEEVLKTTTP 160

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLM 184
           HIVVGTPGR+   IR K LN+ +LK  +LDE D+ML+ L  R D++ I  ++P  ++++M
Sbjct: 161 HIVVGTPGRVLALIRSKKLNLKNLKHFILDECDKMLEQLDMRKDVQEIFRNTPHGKQVMM 220

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L    
Sbjct: 221 FSATLSKEIRPICKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVLE 280

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  +         +L +  F  +A+  E++Q+ER    Q  +D + R+ +AT++
Sbjct: 281 FNQVVIFVKSVQRCEALATLLTDQNFPAIAIHAEMAQEERLAKYQQFKDFQKRILVATNL 340

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
             RG+D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 341 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 389


>gi|15613948|ref|NP_242251.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10174001|dbj|BAB05104.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 438

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 183/354 (51%), Gaps = 13/354 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLA 64
            I + + EALS++G  + T +QE ++ P +R  KDV+  +QTG+GKT+AF L +   +  
Sbjct: 10  QIKKFLLEALSDKGITHPTEIQERLI-PAIRNGKDVIGQSQTGTGKTLAFLLPIVDRIEG 68

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG----VVVAVCIGGVSVHRERRD 120
           E +         A+  APTRELA Q+  EL+ L         +   + +GG    R    
Sbjct: 69  EREEVQ------AVITAPTRELAGQIFEELQALLRHVPHDEEIRAKLIVGGTDRSRTLEK 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IVVGTPGR+ D +  + LN+     +V+DEAD+MLD+GF +D++ +     +  
Sbjct: 123 LRVQPQIVVGTPGRISDLVHEQALNVYTATMLVVDEADQMLDMGFIEDVDKVAARMAENL 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M++FSATI   +    K Y  +   V++  +    + I++R V +   D+      +  
Sbjct: 183 QMMVFSATIPEKLKPFLKKYMNEPRHVHVQPKQATANLIEHRIVPLRHRDKLEITTEVAS 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AIVF +T+         +      V  L G L  ++R   ++ +++   +  +A
Sbjct: 243 VLNPFLAIVFTNTKEQADELADAMLAAGLNVERLHGGLQPRQRKQVMKRVKNYEVQYLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
           TD+AARGID+  +  +I+  L  + +  +HR GRT RAG  G+++ +  P++ Q
Sbjct: 303 TDLAARGIDIKGVSHIINYSLPKDLDFYVHRVGRTARAGADGIALTIFAPEDEQ 356


>gi|310792240|gb|EFQ27767.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 643

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 185/367 (50%), Gaps = 35/367 (9%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-------RFSPA 72
           Y  ++ VQ   + P L+  D++  A+TG+GKT+AF + L   +LA +        RFS  
Sbjct: 101 YETMSEVQSKTIEPALKGMDLVAQAKTGTGKTLAFLIPLLQRMLAADPSLATRRARFSAD 160

Query: 73  SAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
           S  +  + I+PTRELA Q+  E   L A TG+VV   +GG   +   R  Q  G H++VG
Sbjct: 161 STDIRGIIISPTRELAEQIAVEAGKLCANTGLVVQCAVGGTRRNEMLRKTQREGCHLLVG 220

Query: 131 TPGRLCDHIRG--KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRRMLM 184
           TPGRL D +     G++  +L A+VLDEAD MLD+GF  +++ I+   P     +R+ L+
Sbjct: 221 TPGRLNDLLSDPHSGISAPNLAAIVLDEADRMLDVGFERELQDIVSQLPDPHTSQRQTLL 280

Query: 185 FSATISPAITTLAKNYQK----DAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNIL 239
           FSATI   +  LA+ + +    D ++   A E   H  +    V     ++       ++
Sbjct: 281 FSATIPKNVIALARQWVRADNFDFIQTVSADEVLTHEKVPQHVVKCRGWANLIPTFYELM 340

Query: 240 RYHGAK----------NAIVFCSTRASVSRFTKVLAEHLFQVVALSG-----ELSQQERS 284
                K           A+VF  T A V     V  +  F    + G     +L+Q +R+
Sbjct: 341 EKEVEKRRNNPEMMPFKALVFLPTSAFVDLVADVDQKMRFNRDRIMGWRIHAKLTQAQRT 400

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A    RD R+ +  +TDV ARG+D P++  VI     S+ +  +HR GRTGRA ++G  
Sbjct: 401 TASNKFRDARSGILFSTDVTARGLDFPNVTHVIQIGCPSDRQQYIHRLGRTGRADKEGEG 460

Query: 345 VFVIPQN 351
             ++P++
Sbjct: 461 WLLMPES 467


>gi|301090390|ref|XP_002895410.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098662|gb|EEY56714.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 565

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 189/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE +  P  I +AL  +  +  T +Q   +   L  +D++  A TGSGKTV F L L
Sbjct: 90  IKSFEYMRFPPAILDALKAKNILRPTPIQVQAIPCILAGRDMIGIAFTGSGKTVTFTLPL 149

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVA---VCIG 110
               L E  +        P  L + P+REL  Q   V         K G       +CIG
Sbjct: 150 VMLALEEEKKMPIIGHEGPFGLIVGPSRELMRQTFDVVTHFTSHLFKAGYPELRGLLCIG 209

Query: 111 GVSVHRERRDL--QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           G    R++ DL    G HIVV TPGRL   ++ + +N+   K + LDE D MLDLGF ++
Sbjct: 210 GED-KRQQSDLIASRGVHIVVATPGRLNHFLKLREMNLRLCKYICLDEGDRMLDLGFDEE 268

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +    +    +R+ L+FSAT+       AK+     V VN+      + D+      V  
Sbjct: 269 VAATFNHFTSQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQE---VEY 325

Query: 229 SDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +D  IV +L      +   ++FC  +  V    + L     +  ++ G   Q+ER+ A
Sbjct: 326 VKQDAKIVYLLECLQKTSPPVVIFCERKGDVDDIYEYLILKGVEAASIHGGKDQEERNEA 385

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SV 345
           + + + G+  V +ATDVAA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G+ + 
Sbjct: 386 IDLFKSGQKDVLVATDVAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATT 445

Query: 346 FV---IPQNMQRRAERLFREANVSV 367
           F+   +P++     + L  EA  +V
Sbjct: 446 FINKSVPESALLDLKHLLVEAKQTV 470


>gi|156550989|ref|XP_001604385.1| PREDICTED: similar to RE48840p [Nasonia vitripennis]
          Length = 1378

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 191/343 (55%), Gaps = 11/343 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+ ++T +Q   + P L  +D++ +A+TGSGKT++F   + +  L    +F P 
Sbjct: 220 KAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSF--LIPAVELIYKLKFMPR 277

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L         + +GG S   E + L  G +IVV TP
Sbjct: 278 NGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLSKGVNIVVATP 337

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--- 188
           GRL DH++        +L+ +++DEAD +LD+GF ++++ I++  PK+R+ ++FSAT   
Sbjct: 338 GRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKRRQTMLFSATQTK 397

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKN 246
            + A+TTLA   +K+ V V +  E  + +   ++   V      R   +   L+ +  K 
Sbjct: 398 KTEALTTLA--VKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLFTFLKKNRQKK 455

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S+  SV    ++L      V+++ G+  Q +R+       + ++ + + TDVAAR
Sbjct: 456 VMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLCTDVAAR 515

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           G+D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 516 GLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 558


>gi|58336753|ref|YP_193338.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903314|ref|ZP_04021119.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254070|gb|AAV42307.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868943|gb|EEJ76364.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 453

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 183/363 (50%), Gaps = 13/363 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           IFE+  I   + E L +  +V  T VQE ++   L +  V+V A TGSGKT A+ + +  
Sbjct: 4   IFEDSRINPALQEGLKKINFVKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIF- 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELA---VQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                N+    A    A+   P+RELA    QV R+L    A     +A   GG    R+
Sbjct: 63  -----NEIDEAAHYVQAIVTLPSRELADQLYQVARKLRDA-AGMHFSIAHLAGGTDRERQ 116

Query: 118 RRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               QN    +V+ TPGRL D ++ K   +  +K  V+DEAD  LD+GF  DI+ +    
Sbjct: 117 LEKYQNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLSDIDQVASKM 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  ++  FSATI   ++   + Y     ++ I + +     I    + +   DR N + 
Sbjct: 177 PKDVQIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLIDIGSKDRKNVLY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+  V   TK L +   +V  + G ++++ER   L+ +  G+ +
Sbjct: 237 KVLTMGQPYLALVFANTKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARG+D+  + LV++ E+  + E ++HR GRTGR G  G +V +I +    R 
Sbjct: 297 YVVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAVTLIREEEMNRI 356

Query: 357 ERL 359
           E L
Sbjct: 357 EDL 359


>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
 gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
          Length = 892

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 174/345 (50%), Gaps = 6/345 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q++ + +   G+ N T +Q++ +    + +DV+  A+TGSGKTV++   L   L   +
Sbjct: 45  LSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERL---D 101

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            + S      A+ I PTREL +QV + +     KT  +   +  GG S+  +   L    
Sbjct: 102 YKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLSANP 161

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL   I   GL++  ++ VV DEAD + ++G  + +  I+   P  R+ L+F
Sbjct: 162 DIIIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTLLF 221

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHG 243
           SAT+  A+   +K        + + SE +   +I    + V  +++  A++ +L      
Sbjct: 222 SATLPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNSVISH 281

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F  TR     F  +   +  +   + G + QQ R   L   R+G A + + TDV
Sbjct: 282 RETTIIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILLVTDV 341

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           AARGID+PD+  VI+      P+  +HR GR GRAG+ G +  +I
Sbjct: 342 AARGIDIPDVNNVINYNFPGKPKLFVHRVGRVGRAGKVGTAYSLI 386


>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 177/341 (51%), Gaps = 2/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L   + +  
Sbjct: 16  LTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPMLEKL--RHGQTQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  +++       +      GGV    +++ L  G  I+V 
Sbjct: 74  KKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKTQKQALIEGLDILVA 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FSAT+S
Sbjct: 134 TPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFSATLS 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK+   +   ++IA++    S+I+   + V    +   + ++++ +     ++F
Sbjct: 194 NKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQTLIF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAARGID+
Sbjct: 254 IETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAARGIDI 313

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++
Sbjct: 314 EALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKD 354


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 278 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 336

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 337 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 396

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 397 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 456

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 457 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 514

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 515 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 574

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 575 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 607


>gi|226289876|gb|EEH45360.1| ATP-dependent RNA helicase HAS1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 607

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 204/379 (53%), Gaps = 17/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ +  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A 
Sbjct: 134 NLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 194 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLA 248

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-R 180
            G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 249 KGVNLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 308

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           + ++FSAT +  +  LA+ + +   + +N+    +++S ++       + D D     + 
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINV-DHRKEYSTVEGLEQGYVICDSDKRFLLLF 367

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 368 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 427

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +  
Sbjct: 428 TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVG 486

Query: 356 AERLFREANVSVVWEPAPS 374
             +  +EA V VV    PS
Sbjct: 487 FLKHLKEARVPVVEFDFPS 505


>gi|160876637|ref|YP_001555953.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160862159|gb|ABX50693.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268836|gb|ADT95689.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 443

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/334 (33%), Positives = 181/334 (54%), Gaps = 9/334 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------RFSPASAPLA 77
           T VQ+  +   L  +D+L  AQTGSGKT+AFGL L   LL +        +   A   LA
Sbjct: 36  TKVQQLAIPAILAGRDLLALAQTGSGKTLAFGLPLLQQLLLQQQTQLQGAKSVQALNALA 95

Query: 78  LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           L + PTRELA+QV   L+ + ++    + + +  GGV +  +  +L     ++V TPGRL
Sbjct: 96  LVLVPTRELALQVTEALQAVASQLSASLNIQLLCGGVPLEDQLAELTAKPQVLVATPGRL 155

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D  +   +++  +K +VLDEAD +L++GF  D++ ++   PK ++  +FSAT+  A+ T
Sbjct: 156 LDLCKQSHISLDSIKHLVLDEADRLLEMGFWPDVQKLMAFMPKLKQTSLFSATLPEALDT 215

Query: 196 LA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           LA K    + +RV     N    +I+ +  LV    +   ++ +L+ +     +VF S R
Sbjct: 216 LAGKLLVNEPLRVEAHKVNSVAGEIEEQLYLVNKGSKAQVLIALLKQYQWPQVLVFISAR 275

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  K LA+   +V AL GE  Q  RS  L   +  R +V +ATD+ ARGI +  L 
Sbjct: 276 DDADAVAKRLAKAGMKVAALHGEKDQTVRSQTLADFKANRIQVLVATDLMARGIHVDALP 335

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +VI+ +L  +    +HR GRT RAG KG+++ ++
Sbjct: 336 VVINLDLPMSAPVYVHRIGRTARAGEKGLAISLV 369


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/353 (33%), Positives = 184/353 (52%), Gaps = 39/353 (11%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+N+ + + +AL E  YVN T VQE  +   L+ K VL  A+TGSGKT A+ + +    
Sbjct: 21  MFKNLSEELTKALQEANYVNPTKVQELAIPQMLQGKSVLAQAKTGSGKTAAYLIPIIE-- 78

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL + PTRELA QV  E   L     + + V IGGV    +  D +
Sbjct: 79  ----------KEEQALVLTPTRELAEQVANEARKLGKYKKMSIGVIIGGVPYSGQ--DKE 126

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKKR 180
               IV+GTPGR+ D + GKG L++S     ++DE D M D+GF DD+  IL +++P   
Sbjct: 127 AKKDIVIGTPGRILD-LWGKGYLDLSRFSVAIVDEVDRMFDMGFIDDVRMILKNANPDMY 185

Query: 181 RMLMFSATISPAITTLAKNYQKDA--VRVN----IASENRQHSDIDYRAVLVALSDR--D 232
               FSAT+   + +LAK +  +   ++V+    +  E+  +    +R  +  L D   D
Sbjct: 186 GF--FSATVPEEVESLAKEFSPNIEFLKVDDIKPVEIEHLFYEVKGWRDKISKLKDELDD 243

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           N           +  IVF +T+  V    + L +  F++  L G+L Q+ R   L   R 
Sbjct: 244 N-----------EKTIVFVNTKKKVEELYEELRDD-FEISLLHGDLPQRVRLRNLSSFRR 291

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+  V ++TD+A+RGID+ D+  VI+ +   + E  +HR GRTGR GRKG+++
Sbjct: 292 GKTNVLLSTDLASRGIDVIDVTKVINFDTPRDVETYIHRVGRTGRMGRKGIAI 344


>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
          Length = 592

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 207/410 (50%), Gaps = 29/410 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  +DV   A TG+GKT AF L +   L+  
Sbjct: 22  NLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPVLERLMY- 80

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   ++    L + PTREL VQV +  + L   T + + + IGG+ +  + + L+   
Sbjct: 81  --RPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVLRGNP 138

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH+R     ++  +  ++LDEAD MLD  F + ++ I+    +KR+ ++
Sbjct: 139 DVVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKRQTML 198

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVALSDR 231
           FSAT+S  +  LA       ++V + +               R + + D  A+L AL   
Sbjct: 199 FSATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCAL--- 255

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +    R H     +VF  T+    R    L     +V  L G LSQ +R  AL+  +
Sbjct: 256 ---VCRTFRNH----CMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFK 308

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +    + ++TDVAARG+D+P ++ VI+  +    E  +HR GRT RAGR G+SV +  + 
Sbjct: 309 EEDIDILVSTDVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEG 368

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            ++  + + + AN  V     P+ E + +   +  L DP  ++SI  +EK
Sbjct: 369 ERKVVKEIVKRANNPVKSRLIPN-EILEKYKKKLALIDP-DVESIITEEK 416


>gi|254569806|ref|XP_002492013.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|238031810|emb|CAY69733.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|328351494|emb|CCA37893.1| ATP-dependent RNA helicase DDX23/PRP28 [Pichia pastoris CBS 7435]
          Length = 555

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 178/352 (50%), Gaps = 15/352 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I + +   G+   T +Q A +   L  +D++  A+TGSGKT+A+ +   + LL  
Sbjct: 162 NIKKEILDIVHSLGFDEPTPIQRASIPLALASRDLIGIAKTGSGKTLAYIIPALNYLLQL 221

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P  L + PTRELA+QV +E +    K  + +   IGG S+      +  G 
Sbjct: 222 PHLESGDQIPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENVNSISRGC 281

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------- 177
            IVV TPGRL D    K ++++    VVLDEAD M+D+GF   +  IL   P        
Sbjct: 282 EIVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPTDQNRFTS 341

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R   MF+AT+S AI  + KNY      + +       + +D     V     +NA +N
Sbjct: 342 RPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGELG---TVVDTVTQEVRYFPNENAKLN 398

Query: 238 ILRY---HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDG 293
            L           I+F + + +       L+++       + G  +Q +R  A+Q +R G
Sbjct: 399 HLFSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQRELAIQNLRSG 458

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  V IATD+A RGID+P++ LV++ ++++  ++  HR GRTGRAG +G S+
Sbjct: 459 KIDVLIATDLAGRGIDIPNVSLVVNFQMANGLDSYTHRIGRTGRAGNRGYSI 510


>gi|156835836|ref|XP_001642179.1| hypothetical protein Kpol_165p1 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380610|sp|A7TTT5|DBP2_VANPO RecName: Full=ATP-dependent RNA helicase DBP2
 gi|156112620|gb|EDO14321.1| hypothetical protein Kpol_165p1 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 441

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 162/308 (52%), Gaps = 5/308 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E +   G+   T +Q       L  +D++  A TGSGKT+++ L     + A+ 
Sbjct: 120 FPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L +APTRELAVQ+ +E     + + +  +   GGV   ++ R+L  GA 
Sbjct: 179 PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 IVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  LA +Y  D ++V I S   +  H+      V+     RD  + ++      
Sbjct: 299 ATWPKEVKQLAHDYLNDPIQVQIGSLELSASHNITQLVEVVSDFEKRDRLLKHLETASED 358

Query: 245 KNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           K++  +VF ST+ +    TK L E  +  +A+ G+  Q+ER   LQ  R+GR+ + +ATD
Sbjct: 359 KDSKILVFASTKRTCDEVTKYLREDGWPALAIHGDKDQRERDWVLQEFREGRSPIMVATD 418

Query: 303 VAARGIDL 310
           VAARGI +
Sbjct: 419 VAARGIGM 426


>gi|218130843|ref|ZP_03459647.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
 gi|217987187|gb|EEC53518.1| hypothetical protein BACEGG_02438 [Bacteroides eggerthii DSM 20697]
          Length = 448

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 180/364 (49%), Gaps = 23/364 (6%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
            LT +QEA  +     KD+++ + TGSGKT+AF L L  +L A+           A+ + 
Sbjct: 14  QLTPMQEAARDAYQSNKDLVLLSPTGSGKTLAFLLPLVQSLKAD------VQGVQAVVLV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN-GAHIVVGTPGRLCDH 138
           P+RELA+Q+    E ++    V      C GG     E R ++     +++GTPGR+ DH
Sbjct: 68  PSRELALQI----ETVFKSMNVPFKAMSCYGGRPAMEEHRTMRGINPAVIIGTPGRMNDH 123

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA- 197
           +R +   +  +  +V+DE D+ L+ GF D++  ++   P  ++ ++ SAT +  I   A 
Sbjct: 124 LRKRNFEVHSVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALQKRVLLSATDAEEIPQFAG 183

Query: 198 --------KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
                          +R+N  SE    + +D + V+    D+   +  +L   G ++ +V
Sbjct: 184 VGGAVSGSDTPSSQVIRLNFLSEEAVSNRLDLQKVISPEKDKLETLYRLLCTLGDRSTLV 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + R SV R    L    F   A  G + Q++R  AL   R+G   V ++TD+AARG+D
Sbjct: 244 FVNYRESVERVAAYLKSKKFPCDAFHGGMEQEDRERALYKFRNGSCPVLVSTDLAARGLD 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P ++ V+H  +  N E   HR+GRT R   +G S F++    +R  + L  E  V  + 
Sbjct: 304 IPGIDNVVHYHMPVNEEAFTHRNGRTARWEARGSS-FLLLHAEERLPDYLPEEIPVFGLP 362

Query: 370 EPAP 373
           E  P
Sbjct: 363 EQTP 366


>gi|119491751|ref|XP_001263370.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034081|sp|A1D6X9|DBP8_NEOFI RecName: Full=ATP-dependent RNA helicase dbp8
 gi|119411530|gb|EAW21473.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 526

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 195/361 (54%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q+A +   L+ +D +  ++TGSGKT+AF + +        D
Sbjct: 105 PWLVG-SLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKW--AED 161

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F        + + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 162 PF----GIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDMRPQAIALAGRPHV 217

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP--K 178
           V+ TPGRL DHI+  G      +  ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 218 VIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEADRLLASGPGSMLPDVETCLSALPPSS 277

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSDRD 232
           +R+ L+F+AT++P   A+  + ++  K  V V  I++EN+      +    + V L+ R+
Sbjct: 278 ERQTLLFTATVTPEVRALKNMPRSANKPPVFVTEISTENQGSIPPTLKQTYLKVPLTHRE 337

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     + ++ AI+FC+   +     ++L     +V +L   L Q ER+  L  
Sbjct: 338 -AFLHVLLSTEDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNANLAR 396

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVA+RG+D+P + LVI+ ++  NP++ +HR GRT RAGR G ++ ++ 
Sbjct: 397 FRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLVG 456

Query: 350 Q 350
           Q
Sbjct: 457 Q 457


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 183/351 (52%), Gaps = 6/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+++ T +Q   +   L  +DV+  AQTGSGKT  F   +   +  + 
Sbjct: 236 FPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYHVTKQR 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                   P+AL +APTREL  Q+  E+   +AK      V +C GGV+++ + ++L+ G
Sbjct: 296 P-LKYGDGPMALIMAPTRELCQQLYAEVR-KFAKNYDSFRVGICFGGVNMYEQGKELKMG 353

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++     +S    + LDEAD ML+LGF   +  I +     ++ L 
Sbjct: 354 VEILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLF 413

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHG 243
           FSAT    I  LA     D V++      + + ++     ++    +   ++ NI++ + 
Sbjct: 414 FSATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQTFKILGQDQKLQWLLNNIVQLNS 473

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + +VF + +A      + L +  ++   + G++ Q ER++ ++  +  +    IATDV
Sbjct: 474 VGSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQQLATLIATDV 533

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           AARG+D+  ++ VI+ + + N +  +HR GRT RAG  G ++  + PQ+ +
Sbjct: 534 AARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSE 584


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 271 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 329

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 330 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 389

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 390 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 449

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 450 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 507

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 508 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 567

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 568 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 600


>gi|124512574|ref|XP_001349420.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23499189|emb|CAD51269.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|156072132|gb|ABU45417.1| DEAD-box helicase 11 [Plasmodium falciparum]
          Length = 941

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/366 (31%), Positives = 178/366 (48%), Gaps = 39/366 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------------- 63
            Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L               
Sbjct: 381 NYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYEQNNK 440

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             N  F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  
Sbjct: 441 TSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDK 500

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--------- 174
           GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I  I++         
Sbjct: 501 GADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMPGNDN 560

Query: 175 ----SSPK-----------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
               S  K           KR+ +MFSAT    I  LAK Y      + +      +  I
Sbjct: 561 DVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGSTNEYI 620

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               V V   ++ N ++N+L  +     I+F  T+       + L+      V + G+ S
Sbjct: 621 KQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIHGDKS 680

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG
Sbjct: 681 QDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAG 740

Query: 340 RKGMSV 345
             G++ 
Sbjct: 741 NIGIAT 746


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 175/334 (52%), Gaps = 7/334 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   + +Q+  + P L+++DV+  AQ+G+GKT  F   +  TL   N       +   L
Sbjct: 36  GYEKPSLIQQRGILPLLKKRDVIAQAQSGTGKTATF---VIGTLQNIN---RTTHSICVL 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE-RRDLQNGAHIVVGTPGRLCD 137
            I PTRELA Q+ +  + +     V   VC+GG  + R+ R  L+    I++ TPGRL D
Sbjct: 90  TITPTRELAFQIEQSFKEIGVHLKVKTQVCVGGTRLSRDIRYLLKYNPRIIIATPGRLFD 149

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +      +  L+ V++DEADEM   GF+  I  I    PK   + +FSAT+   I  + 
Sbjct: 150 ILSLNTKILKKLQYVIIDEADEMFSKGFKFQIYRIFKFVPKLCTIGLFSATLPKEIIQIV 209

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +    + VR+ +         I    + V    +  A+ +I R      +IV+ +++   
Sbjct: 210 ETIMNEPVRIFVKKNELTLEGIKQFYIAVEEKWKLEAVCDIYRLMKITQSIVYVNSKKKA 269

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + ++ + F+V+ L G ++Q +RS  ++  R G  RV I TD+ +RGID+  + LVI
Sbjct: 270 EWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRVLITTDLLSRGIDVQQVCLVI 329

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +L ++ E  +HR GR+GR G+KG++V ++ +N
Sbjct: 330 NYDLPTSKEIYIHRIGRSGRFGKKGIAVNLLVKN 363


>gi|225560188|gb|EEH08470.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus G186AR]
          Length = 539

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 195/362 (53%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 118 PWLVG-SLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAF----AAPILQKWA 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 173 EDPF----GIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 228

Query: 126 HIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           HIV+ TPGRL DHI   G +    ++  + VV DEAD +L  G      D+E  L + P 
Sbjct: 229 HIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSALPP 288

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  +++EN+      +    + V L+ 
Sbjct: 289 STARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPLTH 348

Query: 231 RDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  ++    +  K AI+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 349 REAFLHTLISTEANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTANLS 408

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++
Sbjct: 409 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 468

Query: 349 PQ 350
            Q
Sbjct: 469 GQ 470


>gi|213965985|ref|ZP_03394175.1| ATP-dependent RNA helicase [Corynebacterium amycolatum SK46]
 gi|213951399|gb|EEB62791.1| ATP-dependent RNA helicase [Corynebacterium amycolatum SK46]
          Length = 459

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 10/363 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I   L  +   + T+VQ A L      KDVL  A TGSGKT+AFG+ L + L  +N 
Sbjct: 31  PEAIVSILRAQHITSPTAVQVATLPDAFAGKDVLAQAPTGSGKTLAFGIPLVALL--KNA 88

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             +    P AL I+PTRELA Q+   L  + A  G+ V   +GG SV +++  L     I
Sbjct: 89  SPALPGYPRALIISPTRELADQIADVLADIGAAAGLRVLSLVGGDSVVKQQTLLAAPVDI 148

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            V TPGR  D  R   L++ H+ AVV+DEAD + D+GF  D+  ++ + PK  + ++FSA
Sbjct: 149 AVVTPGRAHDLRRRGVLSLEHVLAVVVDEADMLADMGFLPDVLGLVRACPKAAQRMVFSA 208

Query: 188 TISPAITTLAKNYQ-KDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHG 243
           TI+     L ++ + +D     IA      S +   + R +L+ + D   A   +     
Sbjct: 209 TINDDAADLIRDRRTRD---TEIAKHKVTASRLTMRNMRHLLLRVEDNAEADEVVAWIAS 265

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K+  ++F +++A V +  K L  +  ++  L G+  Q  R   L+   DG   V + TD
Sbjct: 266 RKDQCVIFANSKARVVQLAKFLQFYDIKLGFLHGDRGQATRRAVLKAFADGEINVLVTTD 325

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+  L+LV+HA+   +    +HRSGRT RAG  G    ++      +A  L   
Sbjct: 326 VAARGIDIDALDLVVHADPPRDSATYIHRSGRTARAGASGTVAMIVRNRQVDQARELLAG 385

Query: 363 ANV 365
           A V
Sbjct: 386 AGV 388


>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 379

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 188/346 (54%), Gaps = 14/346 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           +AL+E  Y   T +QE  +   L  KDVL  A TGSGKT ++ L + + L     A+N  
Sbjct: 14  QALTEMTYEKPTPIQELAIPAILTGKDVLGIAPTGSGKTASYVLPVLAQLSKVEKAKNRH 73

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAH 126
                   +L + PTRELA+QV    +    K    + V    GGVS++ + + +  G  
Sbjct: 74  IQ------SLILVPTRELAIQVEEVFKSFAHKLPEPLKVKAVYGGVSINPQMKAMM-GVS 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL +      +++S LK++VLDEAD++L+L F+++++ IL   PKKR+ L+FS
Sbjct: 127 ILIATPGRLIELAESNAIHLSTLKSLVLDEADKLLNLDFQEEMKRILSWIPKKRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  ++ + +    + + + I +E      I   A  V+   +   +  ++R    K 
Sbjct: 187 ATLNDKVSEITQLILHEPIVLKIENEEDSVELIQQTAYRVSDERKGPLLRYLIRSRNMKQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F S+     +  + L ++     A+  + SQ  R+  L+  + G  +V +ATD+ +R
Sbjct: 247 VLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFKAGHLKVLVATDLISR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           GID+  L  VI+ EL  +P++ +HR GRTGRA   G ++ FV P++
Sbjct: 307 GIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGEALTFVTPED 352


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 177/351 (50%), Gaps = 14/351 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++ G+   TS+Q   L   +  +DV+  A+TGSGKT+AF L +   ++ +       
Sbjct: 502 DVLADMGFDKPTSIQMQALPVIMSGRDVVGVAKTGSGKTLAFLLPMFRHIM-DQPPLKDT 560

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L + PTRELAVQ+ R+ +      G+      GG  +  +  +L+ GA IVV TP
Sbjct: 561 DGPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIREQIAELKRGAEIVVCTP 620

Query: 133 GRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +   +G+  N+  +   VLDEAD M D+GF   +  I  +    R+ ++FSAT+
Sbjct: 621 GRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIRPDRQTILFSATM 680

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA----- 244
              I +L K   K  V + +   +   SDI     +V +   D    ++L   G      
Sbjct: 681 PRIIDSLTKKVLKSPVEITVGGRSVVASDITQ---IVEIVPEDQKFYHLLGLLGELYDKD 737

Query: 245 --KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               ++VF   +       K L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 738 EDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGIVPILIATS 797

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           VAARG+D+  L+LV++ +  S+ E+ +HR GRTGRAG KG +V  I +  +
Sbjct: 798 VAARGLDVKQLKLVVNYDCPSHSEDYVHRCGRTGRAGNKGTAVTYITEEQE 848


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|268565311|ref|XP_002639404.1| Hypothetical protein CBG03992 [Caenorhabditis briggsae]
 gi|187036185|emb|CAP24791.1| hypothetical protein CBG_03992 [Caenorhabditis briggsae AF16]
          Length = 750

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/352 (30%), Positives = 184/352 (52%), Gaps = 10/352 (2%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+ P      E L E  YV  T +Q   +   L   DV+ +A+TGSGKT+A  + +   
Sbjct: 78  FEDFPLSWRTLEGLKENEYVKPTEIQRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEA 137

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++SP     AL I+PTRELA+Q    +  +    G    + IGG  V  ER  +
Sbjct: 138 LW--RVKWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVAFERNRI 195

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I+V TPGRL  H+   + +N   L+ +VLDEAD MLD+GF   +  I+++ P +R
Sbjct: 196 -SGINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFSKQLNSIINNLPAER 254

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNI 238
           + L+FSAT +  +  L++    D V V++   +   +  + +   V + +  + N + + 
Sbjct: 255 QTLLFSATQTRNVKDLSRVCTNDPVFVSVHENSAAATPDNLKQSYVVVEEEIKINTLWSF 314

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRAR 296
           +  H  K ++VF S+       T+V ++      V+ L G ++Q++R        + +A 
Sbjct: 315 IEAHKKKKSLVFVSSCKQARFLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKYDESKAA 374

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V IATDVA+RG+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++
Sbjct: 375 VLIATDVASRGLDFERIDWVIQVDCPAQIDDYIHRVGRSARMEESGNSLLMV 426


>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 944

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 184/353 (52%), Gaps = 12/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + +  A+   GYV  TSVQ+  +   L  +DV  SA TGSGKT AF L +   LL  
Sbjct: 313 NISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILERLL-- 370

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQ 122
              + P    +   + I PTREL VQ+      L   T +  A+ +GG  ++  +  +L+
Sbjct: 371 ---YRPKKVAVTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELR 427

Query: 123 NGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGR+ DH+     +++  ++ +VLDEAD +L+LGF++++  ++ S P  R+
Sbjct: 428 ARPDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQ 487

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNI 238
            L+FSAT++  +  LA       VRV  +  N     +    V +  S   DR+  ++++
Sbjct: 488 TLLFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSL 547

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        IVF  T+    R   VL     +   L G L+  +R  AL   + G   V 
Sbjct: 548 LTRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDRFKSGDVTVL 607

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +ATD+AARG+D+  +  VI+ E+  + ++ +HR GRT RAG  G SV +I ++
Sbjct: 608 VATDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGES 660


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|171687533|ref|XP_001908707.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943728|emb|CAP69380.1| unnamed protein product [Podospora anserina S mat+]
          Length = 396

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++    L + D  +      AL
Sbjct: 42  GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISV----LQKID--TSLKQCQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG SV  + + L  G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALGEGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L    +K  VLDEADEML  GF + I  I    P+  ++++ SAT+   +  +  
Sbjct: 156 IQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 399

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/345 (31%), Positives = 175/345 (50%), Gaps = 5/345 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRF 69
           I +A+   GY   T++Q   +   +  +D++ +AQTG+GKT +F L +   L   E  R 
Sbjct: 12  ITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPILEKLAKGETQRK 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               A   L +APTRELA Q+ ++++       +      GGV    +++ L +G  I++
Sbjct: 72  KRIRA---LILAPTRELAEQIDQKVKQYGQNLSLTSLAMYGGVDEKPQKQALIDGVDILI 128

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + +    ++ +V+DEAD MLD+GF DDI  ILD  P   + L+FSAT+
Sbjct: 129 ATPGRLLDLYGKRAVYFEEVEILVMDEADRMLDMGFIDDINKILDRLPTDIQHLLFSATL 188

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +    A++
Sbjct: 189 SNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITVDKDKKSALLSHLIKENDWDQALI 248

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   ++    L +      A     SQ  R   L   + G+ +  IAT V ARGID
Sbjct: 249 FIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLLADFKAGKIQYMIATGVGARGID 308

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           +  L  VI+ +L    +  +HR GRTGRA  +G ++ FV   N +
Sbjct: 309 IEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFK 353


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 356 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 414

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 415 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 474

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 475 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 534

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 535 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 592

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 593 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 652

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 653 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 685


>gi|50545487|ref|XP_500281.1| YALI0A20328p [Yarrowia lipolytica]
 gi|74660175|sp|Q6CGD1|DBP4_YARLI RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49646146|emb|CAG84219.1| YALI0A20328p [Yarrowia lipolytica]
          Length = 740

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 186/364 (51%), Gaps = 11/364 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +P  +   E L    YV  T VQ+  + P L+  D+L +A+TGSGKT+AF + +   
Sbjct: 41  FEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPVLEC 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +++S      AL I+PTRELAVQ+ + L  +         + IGG  V  E   L
Sbjct: 101 LF--RNKWSDVDGLGALVISPTRELAVQIFQVLRKIGRCHSFSAGLVIGGKDVAMEADRL 158

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++ TPGRL  H+ +  G ++S++K +VLDEAD +LD+GF+  ++ IL++ P  R
Sbjct: 159 AK-LNILICTPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDAILENLPVDR 217

Query: 181 RMLMFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT + +++ LA+    D   +  N  + +    +++   V V L D+ + +   
Sbjct: 218 QTLLFSATQTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQNYVCVELQDKLDTLWGF 277

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           LR H     IVF S+   V    +     +    ++ L G+  Q  R + +       + 
Sbjct: 278 LRTHTKFKIIVFFSSSKQVRYVYETFRTLQPGIPLLHLHGKQKQGARMDVVSKFSKASSS 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRR 355
              ATD+ ARGID P +  V+  +   +    +HR GR+ R G+ G + +F+ P      
Sbjct: 338 CLFATDIVARGIDFPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFLTPTEEPAM 397

Query: 356 AERL 359
            +RL
Sbjct: 398 IQRL 401


>gi|330502250|ref|YP_004379119.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916536|gb|AEB57367.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 441

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 184/354 (51%), Gaps = 6/354 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A + P L  KD+ V AQTGSGKT AF L L + LL + +     
Sbjct: 13  KAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNRLLGDGNSKQRL 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL + PTRELA Q  +E+E     T +   +  GG    + +  +     I++GTP
Sbjct: 73  SIR-ALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDF-KVQAAMMRKIDILIGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +H     L +  ++ +V DEAD MLD+GF +D + + ++    + +L  + T    
Sbjct: 131 GRLIEHANAGNLPLDEVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTLLFSATTGGNG 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +     K+   + + S ++ +     + +    +     +V+ +L       AIVF 
Sbjct: 191 LREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNYHKEQLVDWLLANETYDKAIVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R    L     +   L GE  Q++R  A++ +R G  RV +ATDVAARG+D+ 
Sbjct: 251 NTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVLVATDVAARGLDVE 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
            L+LVI+ ++  + +  +HR GRTGRAG +G++V +I     N+    ER  ++
Sbjct: 311 GLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSSIERYLKQ 364


>gi|302697571|ref|XP_003038464.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
 gi|300112161|gb|EFJ03562.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
          Length = 528

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 209/387 (54%), Gaps = 11/387 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L++ G+  +T VQ   +   L  KDVL +A+TGSGKT+AF +     L     +F P +
Sbjct: 27  GLTDMGFSTMTPVQAKSIPVLLAGKDVLGAARTGSGKTLAFLIPAIEML--HRLKFKPMN 84

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I PTRELA+Q+    + L A       + +GG +   E   LQ G ++++ TPG
Sbjct: 85  GTGIIIITPTRELALQIFGVAKDLMAHHSQTYGIVMGGANRRAEMEKLQKGVNLLIATPG 144

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-RRMLMFSATISP 191
           RL DH++  KG    +LKA+V+DEAD +L++GF ++++ I+   P + R+ ++FSAT + 
Sbjct: 145 RLLDHLQNSKGFVFRNLKALVIDEADRILEVGFEEEMKRIISILPNENRQSMLFSATQTT 204

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIV-NILRYHGAKNAI 248
            +  LA+ + +   V +++  E    +     +  +V  SDR   ++   L+ H  K  I
Sbjct: 205 KVQDLARISLRPGPVSIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLFTFLKKHLKKKII 264

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+ L G+  QQ+R+N      +  + + + TDVAARG+
Sbjct: 265 VFFSSCNSVKYHAELLNYIDTPVLDLHGKQKQQKRTNTFFEFINAESGILLCTDVAARGL 324

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSV 367
           D+P ++ +I  +   +P + +HR GRT RAG+ G S +F++P  +     R  +E+ V +
Sbjct: 325 DIPRVDWIIQYDPPDDPRDYIHRVGRTARAGKVGKSLLFLLPSELG--FLRFLKESKVPL 382

Query: 368 VWEPAPSVE-AIRERDAQRILQDPLFL 393
                P+ + A  +   +++LQ   FL
Sbjct: 383 NEYSFPANKIANVQSQLEKLLQKNYFL 409


>gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca
           mulatta]
          Length = 406

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 174/327 (53%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI++GTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIMGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGICQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|91206551|sp|Q2UKX3|DBP8_ASPOR RecName: Full=ATP-dependent RNA helicase dbp8
 gi|83767653|dbj|BAE57792.1| unnamed protein product [Aspergillus oryzae]
          Length = 443

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 194/361 (53%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +L+       T++Q+A +   L+ +D +  ++TGSGKT+AF + +        D
Sbjct: 22  PWLVG-SLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKW--AQD 78

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    H+
Sbjct: 79  PF----GIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDMRSQALALSQRPHV 134

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSP--K 178
           V+ TPGRL DHI   G      +  ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 135 VIATPGRLADHINTSGEDTVCGLKRVRMVVLDEADRLLAPGPGSMLPDVETCLSALPPSS 194

Query: 179 KRRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQ--HSDIDYRAVLVALSDRD 232
           +R+ L+F+AT++P   A+ ++ +   K  V V  I++EN       +    + V ++ R+
Sbjct: 195 ERQTLLFTATLTPEVRALKSMPRAENKPPVFVTEISTENNGAIPPTLKQTYLKVPMTHRE 254

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     +  K AI+FC+   +     ++L     +V +L   L Q ER++ L  
Sbjct: 255 -AFLHVLLSTERNSTKPAIIFCNHTKTADLLERMLRRLSHRVTSLHSLLPQSERNSNLAR 313

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVA+RG+D+P + LVI+ ++  NP++ +HR GRT RAGR G +V ++ 
Sbjct: 314 FRASAARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGRHGEAVTLVG 373

Query: 350 Q 350
           Q
Sbjct: 374 Q 374


>gi|7022744|dbj|BAA91709.1| unnamed protein product [Homo sapiens]
          Length = 670

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 189/346 (54%), Gaps = 8/346 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF   
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMTR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  LA+ + +K+ + V +  +  N     ++   V+     R   +   L+ +  K  +
Sbjct: 370 KVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLM 429

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + TDVAARG+
Sbjct: 430 VFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGL 489

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 490 DIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|23010493|ref|ZP_00051162.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 407

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/259 (36%), Positives = 143/259 (55%), Gaps = 7/259 (2%)

Query: 89  QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH 148
           QV    E       + VA+ IGGVS   +   L  G  +++ TPGRL DH     L ++ 
Sbjct: 1   QVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTDVLIATPGRLLDHFERGKLLLTG 60

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN 208
           ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FSAT+ P I  LA  +  +  RV 
Sbjct: 61  VELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFSATMPPEIERLADMFLHNPQRVE 120

Query: 209 IASENRQHSDIDYRAVLVALSDRDNAIVNILRY-----HGAKNAIVFCSTRASVSRFTKV 263
           +A  +   + I+ R  LVA     +    +LR+     +  +N I+FC+ +  V++  + 
Sbjct: 121 VARPSSTATTIEQR--LVATGAEGHEKRKVLRHLIRSANELQNGIIFCNRKRDVAQLQRS 178

Query: 264 LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
           L  H F   AL G++ Q+ R  AL   R G   + +A+DVAARG+D+P +  V + ++  
Sbjct: 179 LTSHGFNAAALHGDMDQRARMAALDGFRSGETPLLVASDVAARGLDIPAVSHVFNFDVPH 238

Query: 324 NPENLLHRSGRTGRAGRKG 342
           +PE+ +HR GRTGRAGR G
Sbjct: 239 HPEDYVHRIGRTGRAGRAG 257


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 212

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 213 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 272

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 273 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 332

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 333 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 390

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 391 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 450

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 451 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 483


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 254 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 312

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 313 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 372

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 373 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 432

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 433 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 490

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 491 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 550

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 551 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 583


>gi|30683736|ref|NP_193396.3| DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]
 gi|75338927|sp|Q9ZRZ8|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
 gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
          Length = 789

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 179/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 173 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLL-- 230

Query: 66  NDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++
Sbjct: 231 ---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ 
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  +  L K      +R++     R+   +    V +  +   +++  ++++ 
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       I
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 467

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +
Sbjct: 468 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 516


>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 395

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 177/339 (52%), Gaps = 2/339 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++++E GY   T++Q   +   L+ +D++ +AQTG+GKT  F L +   L+    +    
Sbjct: 14  KSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPILDRLM--QGQTQRK 71

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA+QV   ++     T +      GGV    +++ L +G  ++V TP
Sbjct: 72  KRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQQLIDGVDVLVATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D    + ++   ++ VVLDEAD MLD+GF + I  I+   P + + L+FSAT+S  
Sbjct: 132 GRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRLPTEAQFLLFSATLSNK 191

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  LAK    +A  ++IA+     S+I    + V    +   + +++  +    A++F  
Sbjct: 192 VRELAKTAVGEAHEISIAAHQASKSNITQWLITVDKDQKSALLSHLIHEYQWDQALIFIE 251

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   ++    L +      A     SQ  R   L   + G+ +  IAT VAARGID+ +
Sbjct: 252 TKHGAAKLAAQLEKRGIAAEAFHSGRSQAVREQLLADFKAGKIKYLIATGVAARGIDIDE 311

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           L  V++ +L    +  +HR GRTGRA  +G ++ ++ ++
Sbjct: 312 LPRVVNYDLPFPADEYVHRIGRTGRAEAQGEAISLVSKD 350


>gi|157737362|ref|YP_001490045.1| putative ATP-dependent RNA helicase RhlE [Arcobacter butzleri
           RM4018]
 gi|157699216|gb|ABV67376.1| putative ATP-dependent RNA helicase RhlE [Arcobacter butzleri
           RM4018]
          Length = 351

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 151/272 (55%), Gaps = 2/272 (0%)

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTPGRLC 136
           + + PTRELA Q+G+ ++  YAK   +  + I GGVS   + + L NG  I+V T GRL 
Sbjct: 1   MILVPTRELATQIGKVIDD-YAKYLDIKRLAIFGGVSSKEQEKKLSNGIDILVSTSGRLL 59

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           +HI+ K +N+S +  VV+DE D MLD+GF +D+E IL +  + R+++MFSAT++  +  L
Sbjct: 60  EHIKNKNVNLSSVTTVVIDEVDTMLDMGFLEDLEKILPNIGQNRQIMMFSATLNQNVKKL 119

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           AK +  D V + +A +      ID + VLV    +   +  ++        +VF + +  
Sbjct: 120 AKEFLSDPVVIEVAKQRSSVKIIDQQIVLVDEDKKAELLSYLIGSRNYSQVLVFVNMKKE 179

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L         + G++ Q  R+ AL+  + G  RV +ATD+AARGID+  L +V
Sbjct: 180 ADDLVAHLNLDGLPAECIHGDIRQTARAKALRKFKSGDIRVLVATDIAARGIDIELLPVV 239

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++  L     +  HR GRTGRAG  G ++ ++
Sbjct: 240 VNFALPETITDYTHRIGRTGRAGNAGTAITLL 271


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 212

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 213 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 272

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 273 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 332

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 333 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 390

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 391 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 450

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 451 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 483


>gi|312376077|gb|EFR23272.1| hypothetical protein AND_13185 [Anopheles darlingi]
          Length = 621

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 182/331 (54%), Gaps = 10/331 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF   + +  L    RF P +
Sbjct: 141 AIAEMGFTKMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAF--LIPAVELIHKLRFKPRN 198

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ I+PTRELA+Q+   L+ L A       + +GG S H E   L  G +I+V TPG
Sbjct: 199 GAGAIIISPTRELAMQIFGVLKELMAHHHQTYGLLMGGASRHTENEKLGKGLNIIVATPG 258

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF +D++ I+   PKKR+ L+FSAT S  
Sbjct: 259 RLLDHLKSTPNFLYKNLQCLIIDECDRILEIGFEEDLKQIISILPKKRQTLLFSATQSSR 318

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  L +   + + + V +  +N+  + +   +   ++     R   +   L+ +  K  +
Sbjct: 319 LDELGRLALKSEPIYVGV-DDNKTEATVTGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 377

Query: 249 VFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           VF S+  SV +F   L  ++   V ++ G+  Q +R++      +  + + + TDVAARG
Sbjct: 378 VFFSSCLSV-KFHHELFNYIDLPVQSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARG 436

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +D+P ++ ++  +  ++ +  +HR GRT R 
Sbjct: 437 LDIPAVDWIVQYDPPNDTKEYIHRVGRTARG 467


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
 gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
          Length = 787

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  SV
Sbjct: 519 IKNAESSV 526


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 154 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 212

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 213 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 272

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 273 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 332

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 333 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 390

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 391 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 450

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 451 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 483


>gi|269104326|ref|ZP_06157022.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160966|gb|EEZ39463.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 394

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 171/320 (53%), Gaps = 8/320 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELE 95
           KDVL +AQTG+GKT +F L +       ND  +  P      L +APTREL  QV   +E
Sbjct: 6   KDVLAAAQTGTGKTASFVLPMLERF---NDGVKVRPKRV-RGLILAPTRELVAQVAENIE 61

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                  +      GGV    +++ L  G  I+V TPGRL D    + +++  ++ VVLD
Sbjct: 62  KYSKHLNIKTLAMFGGVEYKHQKQALIEGVDILVATPGRLLDMCTQRAIHLDEVETVVLD 121

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN-IASENR 214
           EAD MLD+GF + I  ++D  P   + L+FSAT++  +  LA+   ++ + ++ I+  N 
Sbjct: 122 EADRMLDMGFIEAINKVMDRLPLDCQQLLFSATMTRQVRELARTAIENPIELSEISKGNA 181

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             S I+   V V    + + + ++++ +    A++F  T+   ++  + LA+      A 
Sbjct: 182 AASKIEQWLVTVDKDMKSSLLSHMIKENDWDQALIFIETKHGAAKLVEQLAKRDIYAEAF 241

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
               SQ  RS  L+  + G+ ++ +AT VAARGID+ +L+ VI+ +L    E  +HR GR
Sbjct: 242 HSGRSQAVRSQLLEDFKSGQLKLMVATGVAARGIDIDNLKRVINYDLPYPAEEYIHRIGR 301

Query: 335 TGRAGRKGMSV-FVIPQNMQ 353
           TGRAG  G ++ FV   N +
Sbjct: 302 TGRAGASGEAISFVSKDNFK 321


>gi|325119967|emb|CBZ55520.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
          Length = 434

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 184/348 (52%), Gaps = 12/348 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAENDRFSPA 72
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F L++   L L  +      
Sbjct: 58  AIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDASGEEGNT 117

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRE---RRDLQNGAHI 127
              + L IA TRELA Q+  E +    Y K  V   V  GG+S+ +     +D +   HI
Sbjct: 118 QGVVCLGIAHTRELAFQIKNEFDRFSKYLKN-VKCEVVYGGISIQKNIDMLKDPKTTPHI 176

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGR+   I+GK LN   +   VLDE D+ L+ L  R D++ I  ++PKK++++ FS
Sbjct: 177 LIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKKQVMFFS 236

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT++  I  + K + +  V V I  E++   H  + Y   L   S+++  + ++L     
Sbjct: 237 ATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQE-SEKNRKLNDLLDTLEF 295

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  + +      ++L E  F  +A+   L Q+ER N  Q  ++   R+ +ATD+ 
Sbjct: 296 NQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMVATDLF 355

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++ FV  Q+
Sbjct: 356 GRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQD 403


>gi|229071788|ref|ZP_04205003.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
 gi|228711383|gb|EEL63343.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
          Length = 436

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 178/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I     K  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMSKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +
Sbjct: 310 IDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349


>gi|197099748|ref|NP_001126779.1| eukaryotic initiation factor 4A-I [Pongo abelii]
 gi|73621051|sp|Q5R5F5|IF4A1_PONAB RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|55732624|emb|CAH93011.1| hypothetical protein [Pongo abelii]
          Length = 406

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 8/327 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  +   ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL +APTRELA Q+ + +  L    G     CIGG +V  E + LQ  A
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I    + V   + + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLH 330
            ARGID+  + LVI+ +L +N EN +H
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIH 358


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 180/343 (52%), Gaps = 14/343 (4%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           D++  A TGSGKT+AFG+  A T +       P   P+ L +APTRELA Q  +  +   
Sbjct: 66  DMVGIAATGSGKTLAFGMP-ALTQIHSQPPCKPGQ-PICLVLAPTRELAQQTAKVFDDAG 123

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQ--NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             +GV      GG   + ++  ++   GA ++V TPGRL D +    + +  +  +VLDE
Sbjct: 124 EASGVRCVCVYGGAPKYEQKAQMKAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDE 183

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLDLGF  +I  I  ++   R+ +MFSAT   ++ +LA  +  + ++V I +E  + 
Sbjct: 184 ADRMLDLGFEPEIRAIAGATRADRQTVMFSATWPQSVQSLASEFMCNPIKVRIGAEGLKA 243

Query: 217 SDIDYRAV-LVALSDRDNAIVNILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQ 270
           S    + V +V   D+D  +  +++ +  K       ++F   +   +   + L+   + 
Sbjct: 244 SQSITQIVEVVEPQDKDRHLARVMKQYLGKGKEVPRTLIFGLYKKECANLHQRLSRE-WP 302

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            V + G++SQ +R  ++   + G +R+ IATDVAARG+D+ ++E VI+       E+ +H
Sbjct: 303 AVCIHGDMSQHDREKSVDAFKKGTSRILIATDVAARGLDIKEVEYVINYTFPLTTEDYVH 362

Query: 331 RSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREANVSVVWE 370
           R GRTGRAG  G++  F    +  R  E   + R+A   V  E
Sbjct: 363 RIGRTGRAGATGLAHTFFTLHDKARAGELVNVLRKAGAEVPEE 405


>gi|86133649|ref|ZP_01052231.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820512|gb|EAQ41659.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 437

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 178/332 (53%), Gaps = 11/332 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L++     L  +Q   +      K+ ++ + TG+GKT+AF L     L  +N+     
Sbjct: 10  EILAKLNIYELNEMQNEAIEVIENTKNTVILSPTGTGKTLAFLLPTLKMLDVDNENIQ-- 67

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + P+RELA+Q+ + +  +   TG  V    GG S+ +++ +L++   I++GTP
Sbjct: 68  ----ALILVPSRELAIQIEQVIREM--GTGFKVNAVYGGRSMAKDKIELKHTPSILIGTP 121

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ DH      +   +K ++LDE D+ L++GF  ++  I++  P     ++ SAT    
Sbjct: 122 GRISDHFANDRFSKESIKTLILDEFDKSLEVGFEYEMRGIINQLPNLENRILTSATQETD 181

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I        K+A  +N  +  ++   +D + V  +   ++  +V++L+Y G +  I+FC+
Sbjct: 182 IPEFVG--LKNAKTLNYLT-GKKSKKLDIKIVTSSSKSKNQTLVDLLKYIGNQPGIIFCN 238

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            ++++   +  L ++       SG + Q++R  +L   R+G +++ +ATD+AARGID+P+
Sbjct: 239 LKSTIENVSDFLIKNNITHSTFSGGMEQRDRERSLIKFRNGTSQILLATDLAARGIDIPE 298

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           ++ ++H EL    E   HR+GRT R   KG +
Sbjct: 299 IKYIVHYELPQRIEEFTHRNGRTARVDAKGTA 330


>gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
 gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
          Length = 636

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 183/360 (50%), Gaps = 25/360 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E +   GY   T +Q+  L    ++ DV+  AQTGSGKT AF + + S L+ +  + 
Sbjct: 164 VMLENIKLAGYHVPTPIQQYCLPAIKKDHDVVACAQTGSGKTAAFLIPILSKLMGKAKKL 223

Query: 70  S-----PAS-----------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           +     PA+            PL + + P+RELA Q+  E      ++ +   V  GG  
Sbjct: 224 AAPRPNPATYVPDRDNYVRAEPLVVVVCPSRELATQIFDEARRFCYRSMLRPCVVYGGGP 283

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +  +   L  G  +++GTPGRLCD IR    L +  LK +V+DEADEMLD  + ++++ I
Sbjct: 284 LVEQLSQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSSWEEELKQI 343

Query: 173 LDSSPKKRR---MLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +    ++      +MFSAT       +AK +   D VR+ +      H++I    + V  
Sbjct: 344 MSGGDQEEGNIIYMMFSATFPKMARAIAKEHLAHDHVRIRVGRAGSSHTNIKQDIIYVEA 403

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++L        I+F +T+ S       L  +     ++  + +Q+ER ++++
Sbjct: 404 ASKRQALYDLLLSTPPARTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQREREDSIR 463

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP----ENLLHRSGRTGRAGRKGMS 344
             R+G+  + IAT V+ARG+D+ ++  VI+ +L SN     E   HR GRTGR G  G++
Sbjct: 464 AFRNGKMPILIATGVSARGLDVHNVMHVINFDLPSNDHGGIEEYTHRIGRTGRIGNMGLA 523


>gi|6320449|ref|NP_010529.1| Prp28p [Saccharomyces cerevisiae S288c]
 gi|1172596|sp|P23394|PRP28_YEAST RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28;
           AltName: Full=Helicase CA8
 gi|666103|emb|CAA40255.1| pre-mRNA splicing factor RNA helicase PRP28 (helicase CA8)
           [Saccharomyces cerevisiae]
 gi|817829|emb|CAA89729.1| Prp28p [Saccharomyces cerevisiae]
 gi|285811259|tpg|DAA12083.1| TPA: Prp28p [Saccharomyces cerevisiae S288c]
          Length = 588

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELEW---LYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGTAV 538


>gi|323349261|gb|EGA83490.1| Prp28p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 588

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELE---WLYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTXIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGTAV 538


>gi|73992239|ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 2 [Canis familiaris]
          Length = 763

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 213/410 (51%), Gaps = 24/410 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLI-- 248

Query: 66  NDRFSPASAPLA--LAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P  +P+   L + PTREL +QV    + L +   G+  A   GG+ V  +   L+
Sbjct: 249 ---YKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAHHLAGLFSA---GGLDVKSQEAALR 302

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+
Sbjct: 303 AAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQ 362

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVAL-----SDRDNA 234
            ++FSAT++  +  LA    K+ VR+ + S    ++D+    R   V +      DR+  
Sbjct: 363 TMLFSATMTDEVKDLASVSLKNPVRIFVNS----NTDVAPFLRQEFVRIRPNREGDREAI 418

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +
Sbjct: 419 VAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQ 478

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++
Sbjct: 479 IDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERK 538

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
             + + + A   V     P    ++ RD  +++ +D   +  ++ +EK++
Sbjct: 539 MLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL 588


>gi|317575704|ref|NP_001187588.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
 gi|308323440|gb|ADO28856.1| eukaryotic initiation factor 4a-i [Ictalurus punctatus]
          Length = 406

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 166/314 (52%), Gaps = 8/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  E           A+
Sbjct: 51  GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIDIE------LKGTQAM 104

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLCD 137
            +APTRELA Q+ + +  L    G     CIGG +V  E + LQ +  HIVVGTPGR+ D
Sbjct: 105 VLAPTRELAQQIQKVVLALGDYMGATCHACIGGTNVRNEVQKLQADVPHIVVGTPGRVFD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + L+  ++K   LDEADEML  GF+D I  I        ++++ SAT+   +  + 
Sbjct: 165 MLNRRYLSPKYIKMFALDEADEMLSRGFKDQIYEIFQKLSTDIQVILLSATMPQEVLEVT 224

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             + +D VR+ +  E      I    + V   + + + + ++        A++F +TR  
Sbjct: 225 TKFMRDPVRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK 284

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LV
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMDQKERDLIMKEFRSGSSRVLITTDLLARGIDVQQVSLV 344

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 345 INYDLPTNRENYIH 358


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 180/349 (51%), Gaps = 17/349 (4%)

Query: 4   FENIPQVIGEAL----SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FENI   I E L       G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 19  FENIG--IDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVG-- 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               A N      S    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 75  ----ALNCVNRNLSETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIV 236
            ++++ SAT+   +  +   +    V++ +  +      I  +   V++     +   + 
Sbjct: 191 TQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGI--KQFFVSIEKEQWKYETLA 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + R
Sbjct: 249 DLYESLTITQAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFR 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 309 VLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAI 357


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/346 (32%), Positives = 187/346 (54%), Gaps = 8/346 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++ E ++++G+   + +Q       L+ +D++  AQTG+GKT+AF L     + 
Sbjct: 281 FAPYPDLLDE-VTKQGFQTPSPIQSQAWPILLKGEDMIGIAQTGTGKTLAFLLPALIHIE 339

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            ++   S    P  L +APTRELA+Q+ +E+   Y+  G+  AVCI GG + + + +++ 
Sbjct: 340 YQSIPRSQRGGPNVLILAPTRELALQIEKEVN-KYSFRGIK-AVCIYGGGNRNDQIQNVG 397

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +++ TPGRL D ++   ++++ +  +VLDEAD MLD+GF   I  +L      R+ 
Sbjct: 398 RGVEVIICTPGRLNDLVQANVIDVTTVTYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQT 457

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M SAT  P +  LA++Y  + ++V + S +    HS +     +V   D+   I   ++
Sbjct: 458 IMTSATWPPGVRRLAQSYMSNPIQVCVGSLDLAATHS-VRQVVEVVEEDDKFYMIKKFIK 516

Query: 241 YHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVFC  +      +  L    F   A+ G   Q +R  A+  +  G  R+ I
Sbjct: 517 NMQPDDKLIVFCGKKVRADDLSSDLTLDGFLCQAIHGSRDQADREQAIADITSGDVRILI 576

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+
Sbjct: 577 ATDVASRGLDIDDITHVINFDFPRNIEEYVHRVGRTGRAGRTGTSI 622


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 110 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 168

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 169 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 228

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 229 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 288

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 289 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 346

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 347 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 406

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 407 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 439


>gi|325090197|gb|EGC43507.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H88]
          Length = 539

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 195/362 (53%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 118 PWLVG-SLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAF----AAPILQKWA 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 173 EDPF----GIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 228

Query: 126 HIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           HIV+ TPGRL DHI   G +    ++  + VV DEAD +L  G      D+E  L + P 
Sbjct: 229 HIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSTLPP 288

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  +++EN+      +    + V L+ 
Sbjct: 289 STARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPLTH 348

Query: 231 RDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  ++    +  K AI+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 349 REAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTANLS 408

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++
Sbjct: 409 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 468

Query: 349 PQ 350
            Q
Sbjct: 469 GQ 470


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|325269853|ref|ZP_08136463.1| DEAD/DEAH family ATP-dependent RNA helicase [Prevotella multiformis
           DSM 16608]
 gi|324987826|gb|EGC19799.1| DEAD/DEAH family ATP-dependent RNA helicase [Prevotella multiformis
           DSM 16608]
          Length = 437

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 171/331 (51%), Gaps = 13/331 (3%)

Query: 21  VNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           + L ++QE   +  L   KDV+V + TGSGKT A+ L L   L A +D         A+ 
Sbjct: 11  ITLNAMQEETADAVLHTGKDVVVISPTGSGKTYAYLLPLIQRLKASSDELQ------AVV 64

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDH 138
           + P RELA+Q    L+ +   +G+      GG     E R L+     IV  TPGRL DH
Sbjct: 65  LVPGRELALQSASVLKDM--GSGLRAMALYGGRPAMEEHRALREVKPQIVFATPGRLNDH 122

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    ++   +K +V+DE D+ L+LGF++++  IL   P   R ++ SAT S +I     
Sbjct: 123 LDKANIDAGTVKWLVIDEFDKCLELGFQEEMMHILSRLPGIERRILLSATESESIPDFVS 182

Query: 199 NYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
                 VR++  ++N   SD I    V     D+   +  +L   G K++IVF + R SV
Sbjct: 183 --MGRTVRLDYRTDNSGVSDRIRLYTVASPEKDKLETLSRLLLSLGDKSSIVFLNYRDSV 240

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            R    L E  F V    G L Q ER  AL    +G A + ++TD+A+RG+D+PD++ +I
Sbjct: 241 ERTALFLKEKGFTVSWFHGGLEQHEREAALYRFSNGSAPILVSTDLASRGLDIPDVDNII 300

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           H  L    EN +HR GRT R  ++G + FV+
Sbjct: 301 HYHLPETEENYVHRVGRTARWDKEGKTFFVL 331


>gi|302783497|ref|XP_002973521.1| hypothetical protein SELMODRAFT_99934 [Selaginella moellendorffii]
 gi|300158559|gb|EFJ25181.1| hypothetical protein SELMODRAFT_99934 [Selaginella moellendorffii]
          Length = 539

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 180/345 (52%), Gaps = 13/345 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ +LT VQE I+    R +D LV A TGSGKT+AF + +   L   +  F P     A+
Sbjct: 20  GFYDLTPVQERIIPQLCRGQDALVCAVTGSGKTLAFVVPIVEILRKHSASFHPGQVG-AI 78

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG--AHIVVGTPGRL 135
            +APTRELA Q+       +A       V  +GG  V  +   ++    A  +VGTPGRL
Sbjct: 79  VVAPTRELASQIFDVSRPFFAGLNEFDPVLLVGGADVSLDVSSIEKCPRAKFLVGTPGRL 138

Query: 136 CDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
            D ++     L+ S LK ++LDEAD +L++G    +  I+   P +R   +FSAT +  +
Sbjct: 139 LDIMQRCSSHLDFSSLKVLILDEADRLLEMGHDHRVSEIISLLPGQRITGLFSATETKEL 198

Query: 194 TTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFC 251
              A   Q+ + +    + +   S + D+   L++ +D + + +   L  H +K  IV+ 
Sbjct: 199 AVKAGVRQEYSFQTKKQTPSTLSSTNSDFSQYLISDADEKSSQLAQFLLEHKSKKTIVYF 258

Query: 252 STRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            T ASV  +  VL +        +V L G++ Q+ R NALQ   D  + V   TDVAARG
Sbjct: 259 MTCASVDYWGTVLQKVDIMKNVSIVVLHGKMKQKSRENALQRFTDMPSGVLFCTDVAARG 318

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +D+P ++ ++  +   +P   +HR GRT R GR G S VF++P+ 
Sbjct: 319 LDIPGVDWIVQYDPPQDPNTFVHRVGRTARIGRVGHSVVFLLPKE 363


>gi|291411436|ref|XP_002721995.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Oryctolagus
           cuniculus]
          Length = 708

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/383 (30%), Positives = 185/383 (48%), Gaps = 59/383 (15%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL I 
Sbjct: 135 SMTSVQKRSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMPSKIQRSDGPYALVIV 194

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHIR
Sbjct: 195 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIR 254

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S +  +VLDEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 255 STKNIHFSRICWLVLDEADRILDLGFEKDITVILNAVNAECRKRQNVLLSATLTEGVTRL 314

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAV-------------------------------- 224
           A     + V V++  E+R   + + +AV                                
Sbjct: 315 ADISLHNPVSVSVLDESRDQCNPEGKAVQEVSPPQPGSRPDGFAIPESLDQHVTLVPSKL 374

Query: 225 -LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--------------- 268
            LV L+     I+   ++   +  IVF S+   V     +  + L               
Sbjct: 375 RLVCLA---AFILQKCKFEKDQKMIVFFSSCELVEFHYHLFLQTLASGSGARASGPSPSA 431

Query: 269 ---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
               + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P
Sbjct: 432 CTRLRFLRLHGNMEQEERTAVFQEFARSRTGVLLCTDVAARGLDLPQVTWIVQYNAPSSP 491

Query: 326 ENLLHRSGRTGRAGRKGMSVFVI 348
              +HR GRT R G  G S+ ++
Sbjct: 492 AEYIHRVGRTARIGCHGSSLLIL 514


>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
 gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
          Length = 784

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 190/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  SV
Sbjct: 519 IKNAESSV 526


>gi|145347224|ref|XP_001418074.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578302|gb|ABO96367.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 437

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/380 (33%), Positives = 188/380 (49%), Gaps = 42/380 (11%)

Query: 10  VIGEALSERGYVNLTSVQE-AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--- 65
           ++ E L   G   LT VQ  A+     R  DVL +A TGSGKT AF L L S L+ E   
Sbjct: 1   MVVENLRRMGMRKLTVVQRYAMPLAGPRGVDVLCNAPTGSGKTAAFMLPLISRLVRESAE 60

Query: 66  --------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                   +  F   + P  L +APTRELA+Q+  E       T +  A   GG S+  +
Sbjct: 61  APTEAEVVDGEFGVPARPKVLVLAPTRELALQIHMETRKFIFGTPLWCACAYGGSSIKPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD- 174
             +L     I+V TPGRL   +R   + +++S ++ +V+DEAD MLD+GF   +  +L  
Sbjct: 121 LEELAFAPEIIVATPGRLLSMVREDARYVDLSGVQTLVMDEADRMLDMGFEPQLNELLGD 180

Query: 175 ---SSPKKRRMLMFSATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVAL 228
               +  +R+ LMFSAT  P +  LA  Y +    A RV         ++I  + VL+  
Sbjct: 181 YGIPAKNERQTLMFSATFPPQVLRLASYYMRAPPHAARVICGRVGSTVANI--KQVLIET 238

Query: 229 SD-RDNAIVNILRYHGAKNA------------IVFCSTRASVSRFTKVLAEHL--FQVVA 273
              R+  +  +LR   A  A            ++FC  + +     + + E      V  
Sbjct: 239 PHLREQKLPYLLRVLEAVEAKRENDGEDVGLTLIFCKQKGTAEWLRQQIVEVTPSLAVEE 298

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS---SNPENLLH 330
           L G L+Q  R  AL     G A++ +ATDVAARG+D+PD+  VI+ ++    S  ++ +H
Sbjct: 299 LHGSLTQGARLRALDAFATGAAKILVATDVAARGLDMPDVNHVINFDMPTKKSEFDDYIH 358

Query: 331 RSGRTGRAGRKGMSV-FVIP 349
           R GRTGRAGRKG++  F IP
Sbjct: 359 RIGRTGRAGRKGIATSFYIP 378


>gi|291237406|ref|XP_002738626.1| PREDICTED: HLA-B associated transcript 1-like [Saccoglossus
           kowalevskii]
          Length = 429

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 183/346 (52%), Gaps = 17/346 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +        P  
Sbjct: 61  AIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQI-------EPVD 113

Query: 74  APLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
             ++ L +  TRELA Q+ +E E    Y  T + V V  GG+++ ++ + L+N   HIVV
Sbjct: 114 GQVSVLVLCHTRELAFQIAKEYERFSKYMPT-IKVGVFFGGINIKKDEQTLKNNCPHIVV 172

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGRL    R K L++ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT
Sbjct: 173 GTPGRLLALGRNKTLSLKHVKHFILDECDKMLEQLDMRRDVQDIFRQTPHEKQVMMFSAT 232

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +S  I  + K + +D + V +  E +   H    Y   L   ++++  + ++L       
Sbjct: 233 LSKDIRPICKKFMQDPMEVYVDDETKLTLHGLQQYYCKLKD-NEKNRKLFDLLDVLEFNQ 291

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  +       +++L E  F  +A+   ++Q+ER    Q  +D + R+ +AT++  R
Sbjct: 292 VVIFVKSVQRCIALSQLLVEQNFPAIAIHRAMNQEERLARYQQFKDFQKRILVATNLFGR 351

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           G+D+  + +V + ++  +    LHR  R GR G KG+++ FV  +N
Sbjct: 352 GMDIERVNIVFNYDMPEDSNTYLHRVARAGRFGTKGLAITFVSDEN 397


>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
 gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 175/343 (51%), Gaps = 6/343 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L+++ +   T +Q   L+  +  +D++  A+TGSGKT+A+ L L   LL  
Sbjct: 46  NLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLC-MLLRT 104

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +P   P+AL + PTREL  QV   + E L         VC GGV V  +   L+ G
Sbjct: 105 KAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPVC-GGVPVSTQTIALREG 163

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRR 181
           A +VV TPGRL D  +   L +  +  +V+DEAD ML +G  + +  I+     + + R+
Sbjct: 164 ADVVVATPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEEQLRKIVGLATGTSRARQ 223

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L++SAT+  ++  LA++   + + + +         +    V +    +   ++  LR 
Sbjct: 224 TLLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLYHYQKPQKLLETLRT 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S+  +V   T++L +  F    L  E  Q  R   ++  RDG+  + +AT
Sbjct: 284 TPYPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVAT 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           DVA+RG+D P++  VI+ +L    E  +HR GRTGR G  G++
Sbjct: 344 DVASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIA 386


>gi|115492529|ref|XP_001210892.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
 gi|121742586|sp|Q0CZS8|HAS1_ASPTN RecName: Full=ATP-dependent RNA helicase has1
 gi|114197752|gb|EAU39452.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
          Length = 576

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 208/404 (51%), Gaps = 19/404 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ + G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L A 
Sbjct: 104 NLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEMLSAL 163

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + I PTRELA+Q   V +EL   +++T     + IGG +   E   L 
Sbjct: 164 --RFKPRNGTGVIIITPTRELALQIFGVAKELCEFHSQT---YGIVIGGANRRAEAEKLN 218

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G ++++ TPGRL DH++  +G    + K +VLDEAD  LD+GF  ++  I+   P ++R
Sbjct: 219 KGVNLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAELRQIVKILPSEER 278

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT +  +  LA+ + +   + +N+    ++H+ +D       + + D   + + 
Sbjct: 279 QTLLFSATQTTKVEDLARISLKPGPLYINV-DHRKEHATVDGVDQGYIICEADKRFLLLF 337

Query: 240 RYHGAKNAIV---FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +           F S+  +V  +  +L      V+AL G+L QQ R+       +    
Sbjct: 338 TFLKKNLKKKIIIFFSSCNAVKYYADLLNYIDLPVLALHGKLKQQTRTQRFFEFCNATQG 397

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQR 354
             I TDVAARG+D+P ++ +I  +    P+  +HR GRT R   G+ G S+ ++ Q  + 
Sbjct: 398 TLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTARGTKGKIGRSIMLL-QPSEV 456

Query: 355 RAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQ 397
               + REA V VV    P  + I  +   ++++    +L+ IQ
Sbjct: 457 GFLNVLREARVPVVEFEFPQKKIIDIQSQLEKLIGQNYYLNQIQ 500


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T++Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +         P+A+ 
Sbjct: 144 YTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIM-DQPELEELDGPIAVI 202

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q  +E         + VA   GGV +  +  DL+ GA ++V T GRL D +
Sbjct: 203 MSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLKRGAEVIVCTVGRLTDML 262

Query: 140 ---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
              +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT    +  L
Sbjct: 263 AANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEAL 322

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRA 255
           A+      V + +  ++    D+    V++    +   ++ +L  Y    N +VF   + 
Sbjct: 323 ARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQE 382

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L    +    L G + Q +R + +   +  + ++ +AT VAARG+D+  L L
Sbjct: 383 KADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLIL 442

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           V++ +  ++ E+ +HR GRTGRAG KG +  F++P   +R A  + R A  +   EP   
Sbjct: 443 VVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQERMAGEVCR-AFETASKEPPEQ 501

Query: 375 VEAIRE 380
           ++ I E
Sbjct: 502 LKKIWE 507


>gi|323448910|gb|EGB04803.1| hypothetical protein AURANDRAFT_59462 [Aureococcus anophagefferens]
          Length = 469

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/372 (30%), Positives = 183/372 (49%), Gaps = 26/372 (6%)

Query: 4   FENIP-QVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           FE  P +++G+ L +      Y   T VQ+  L   L  +D++  AQTGSGKT  F   +
Sbjct: 10  FEEFPTEILGKRLCDNLQLCHYTRPTPVQKYSLPMGLAGRDMMACAQTGSGKTGGFLFPV 69

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
              LL   D  +PA               P  L +APTREL  Q+  E       TGV  
Sbjct: 70  LVALL--RDGAAPADPNEQRGNSRRQRARPNGLILAPTRELVSQIFDEARKFCYCTGVRP 127

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            VC GG     + ++L+ G  +++ TPGRL D +    + +S  + +VLDEAD MLD+GF
Sbjct: 128 VVCYGGAETRGQLQELERGCDLLLATPGRLVDFLERGRVTLSACRFLVLDEADRMLDMGF 187

Query: 166 RDDIEFIL--DSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I+  +  P+   R+  MFSAT    +  LA ++  + + + +        D+  
Sbjct: 188 EPQIRRIVCQEDMPQTGARQTFMFSATFPREMQILAGDFLDNYIFLTVGRVGSACKDVTQ 247

Query: 222 RAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R   V   D+ +A++  I     +   ++F  T+         L    F   ++ G+ +Q
Sbjct: 248 RFQFVDGRDKPDALMRYISSLEESGLTLIFVETKRDADYLEDTLCREGFPASSIHGDKTQ 307

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  + GR  + + TDVAARG+D+P++  V++ +L     + +HR GRTGRAG 
Sbjct: 308 RDRELALREFKSGRTPILVGTDVAARGLDIPNVLHVVNFDLPRAVSDYVHRIGRTGRAGN 367

Query: 341 KGMSV-FVIPQN 351
            G ++ F+  +N
Sbjct: 368 TGYAMSFLCDKN 379


>gi|95007096|emb|CAJ20316.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii RH]
          Length = 574

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 202/399 (50%), Gaps = 32/399 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q   L   LR K+V   A TGSGKT+ +   L   +    D      A + L + P 
Sbjct: 156 SPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQRI-GRGD----GHAFMGLVLLPA 210

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV  +      + GV V + +GG  +  E + L    HIV+ TPGR+ DH++   
Sbjct: 211 RELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCPHIVIATPGRMSDHVQNDP 270

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITTL 196
           L     +S +  +VLDEAD +L   F DD++ IL   P   + R+ L+FSAT+SPA+  L
Sbjct: 271 LRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSSQGRQTLLFSATVSPALLAL 330

Query: 197 AKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHG---AKNAIVFC 251
            + +  DA+ +  A    Q +  ++ +  + V    +   ++ +L +     +   IVF 
Sbjct: 331 QRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYLLYLLEHTSPFCSDRGIVFA 390

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            +     +    L         L   + Q++R   L+  R   +R+ I TDVA RG+DLP
Sbjct: 391 GSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFRSETSRLLICTDVAGRGLDLP 450

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +E VI+ ++    ++ +HR+GRT RAGRKG+++ FV P+++ R   R+  EA ++   +
Sbjct: 451 RVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSV-RAVHRI--EALINTQLQ 507

Query: 371 PAPSVEAIRERDAQRILQDP--------LFLDSIQGDEK 401
           P PS   I E+D  + L +         LFL+ I  DEK
Sbjct: 508 PLPS---INEQDVLKFLSNYSKVVQKSLLFLNEIGFDEK 543


>gi|47222980|emb|CAF99136.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 509

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 180/352 (51%), Gaps = 43/352 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 106 KLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQ 165

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  F     P  L I P+RELA Q    +E+ Y K         +  A+CIGG+SV  
Sbjct: 166 EKRLPFCKREGPYGLIICPSRELARQTHGIIEY-YCKLLEEEGAPQLRTALCIGGMSVKE 224

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI  I    
Sbjct: 225 QMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYF 284

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L++SAT+   I   AK+     + +N+            RA   +L      ++
Sbjct: 285 KGQRQTLLYSATMPKKIQNFAKSALVKPITINVG-----------RAGAASLD-----VI 328

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             + Y   +  +V+                 L + +  +    Q+ER+ A++  ++G+  
Sbjct: 329 QEVEYVKEEAKMVY-----------------LLECLQKTPPPYQEERTKAIEAFKEGKKD 371

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I
Sbjct: 372 VLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFI 423


>gi|325119402|emb|CBZ54955.1| DEAD box RNA helicase, related [Neospora caninum Liverpool]
          Length = 853

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 217/438 (49%), Gaps = 56/438 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   ++L  R   +L  VQ+A         D +  A+TG+GKT+AF L L   + A 
Sbjct: 135 NLSKQSLKSLQRRNITHLLPVQQAAYKDVFAGHDFIGRARTGTGKTIAFALPLVERVCAS 194

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
             +        P  +A+ PTRELA QV  E + L    G + +VC+ GG + + + + L+
Sbjct: 195 VGDAGLKRREKPRIVALLPTRELAQQVHEEFDTLLG--GRLASVCLYGGAAEYPQLQKLR 252

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-- 180
           +G  +VV  PGR  D +    +    L+AVVLDEAD ML++GFR+D+E IL  + K+R  
Sbjct: 253 SGVSVVVACPGRFKDFMDRGEIGGKQLEAVVLDEADRMLEMGFREDVEEILQWTKKEREA 312

Query: 181 --------RMLMFSATISPAITTLAKNY--------------QKDAVRVNIASENRQHSD 218
                   +ML+F+AT+     TLA  +              +K +   + +  + +   
Sbjct: 313 DSDDVPPLQMLLFTATLPQWALTLADRFMRKDRVVVDVVKLQEKASAASSSSPADAKKGT 372

Query: 219 IDYRAVLVALSDRDNAIVNILRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVA- 273
           I++  +  A   R + + ++L  +     A + I+F  T+  V+     +A ++  + A 
Sbjct: 373 IEHLVLFCAWQSRAHVLGDLLSLYTPPGRASSVIIFAETKQEVNSI--AVASNIRHLCAP 430

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G++ Q +R   L   + G+    +ATDVAARG+ + DL LVI      + +  +HR+G
Sbjct: 431 LHGDIPQNQREATLNAFKKGKFACLVATDVAARGLHVDDLSLVIQISPPRDVDTYIHRAG 490

Query: 334 RTGRAGRKGMSVFVIP-QNMQ--RRAER----LFREANVSVVWEPAPSVEAIRERDAQRI 386
           RTGRAGR G+ + +    ++Q  RR ER    LFR           P   A+R    Q +
Sbjct: 491 RTGRAGRTGVCITLAKLSDVQFLRRIERDGGFLFRRVGT-------PQPRAVRR---QLL 540

Query: 387 LQDPLFLDSIQGDEKKMV 404
           LQ    +D +QGD +++ 
Sbjct: 541 LQ---HIDKLQGDSEEVT 555


>gi|312084719|ref|XP_003144390.1| ATP-dependent RNA helicase DDX18 [Loa loa]
 gi|307760447|gb|EFO19681.1| ATP-dependent RNA helicase DDX18 [Loa loa]
          Length = 549

 Score =  164 bits (416), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 175/334 (52%), Gaps = 12/334 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G++ +T +Q   + P L+ +DVL SA+TGSGKT+AF L  A  LL + + + P +
Sbjct: 81  AIAEMGFIKMTEIQAKCIEPLLQGRDVLASAKTGSGKTLAF-LVPAVELLVKLE-WKPRN 138

Query: 74  APLALAIAPTRELAVQV-GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               + I+PTREL++Q  G   E L     +   + +GG +   E + L  G   +V TP
Sbjct: 139 GTGVIVISPTRELSMQTYGVLSEILEKHPALTHGLIMGGANRQTEAQKLARGVSFLVATP 198

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++      + +LK +++DEAD +LD+GF  +++ IL   PKKR+ + FSAT + 
Sbjct: 199 GRLLDHLQNTDDFMVKNLKCLIIDEADRILDIGFEIEMQQILRVLPKKRQTMFFSATQTS 258

Query: 192 AITTLAKN-YQKDAVRVNIASENRQH-------SDIDYRAVLVALSDRDNAIVNILRYHG 243
            +  L K     D VR+ I   N ++       S +    V+     R   +   L+ + 
Sbjct: 259 KVDELIKAALHSDPVRIGINEVNLKNGNELATVSGLQQGYVVCPSEKRFLLLFTFLKRNR 318

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  +VF S+  SV    ++L      V  + G+  QQ+R+         ++   + TDV
Sbjct: 319 DKKVMVFFSSCNSVKYHHELLNYIDISVQCIHGKQKQQKRTCTFFSFCQAKSGTLLCTDV 378

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           AARG+D+P ++ ++  +    P   +HR GRT R
Sbjct: 379 AARGLDIPQVDWIVQYDPPDEPREYIHRVGRTAR 412


>gi|169409547|gb|ACA57893.1| DEAD box polypeptide 43 (predicted) [Callicebus moloch]
          Length = 680

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 203/395 (51%), Gaps = 21/395 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F   P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 245 FHYYPEVM-ENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 303

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  T+  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 304 LQPTVKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 356

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 357 IEELRKGVDIIIATPGRLNDLQMNNFVNLRNITYLVLDEADKMLDMGFEPQIMKILLDVR 416

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S ++   ++    ++   I
Sbjct: 417 PD-RQTIMTSATWPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVEQNIIVTTEEEKWIHI 475

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 476 QTFLQSMSSTDKVIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGK 535

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 536 VRILIATDLASRGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWR 595

Query: 355 RAERL---FREANVSVVWEPAPSVEAIRERDAQRI 386
            A  L    + AN + + +P P    +    A  I
Sbjct: 596 FAPELVNILQRANQASMCKPRPRKSEVLSASANHI 630


>gi|259145479|emb|CAY78743.1| Prp28p [Saccharomyces cerevisiae EC1118]
          Length = 588

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELEW---LYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGTAV 538


>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
 gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
          Length = 389

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/372 (30%), Positives = 194/372 (52%), Gaps = 15/372 (4%)

Query: 1   MKIFENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+  P  IGE    AL+ +G    T +Q+ ++   L  ++++V +QTG+GKT+A+ L
Sbjct: 1   MNQFQQWP--IGEPFLEALTNQGITEPTEIQQQVIPEALDGQNLIVHSQTGTGKTLAYLL 58

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +    L + +     +   AL +APT+ELA+Q+    + L A T + V   IGG ++ R
Sbjct: 59  PM----LTKTEELPEQTQ--ALILAPTQELAMQIVEVAKQLTATTSITVLPLIGGANIKR 112

Query: 117 ERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILD 174
           +   L+    H+ VGTPGR+ + +  K L + H+K +V+DEAD M++     +  E +  
Sbjct: 113 QVEKLKKKKPHVAVGTPGRILELMEMKKLKVPHVKMIVVDEADRMMEETSAWNAFENVAK 172

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               + + L  SAT +   T L   Y      V+ A  N     +++  +     +R + 
Sbjct: 173 RIGNEAQYLFVSATFASRFTELVAPYVPFIETVS-AQGNTVQQAVNHWFIRCEKRERMDV 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++ +   +  IVF +    V+  T  L     + VALS + ++QER  AL  ++   
Sbjct: 232 VRKLIHHENIQRGIVFVNRLEHVAETTAKLQFKGIKAVALSSDQTKQERERALHQLKTSE 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A+V IA+DVAARG+D+ D+  VI  E  +  E  +HR+GRTGR G++G  + +  +    
Sbjct: 292 AQVLIASDVAARGLDVDDVSHVIQLEPPTTSEAYVHRAGRTGRMGKEGTVITLTSEREMY 351

Query: 355 RAERLFREANVS 366
           + E++ +  N+S
Sbjct: 352 KLEKIEKGLNLS 363


>gi|227325834|ref|ZP_03829858.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 382

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 167/312 (53%), Gaps = 13/312 (4%)

Query: 42  VSAQTGSGKTVAFGLALASTLLAENDRFSPASA------PLALAIAPTRELAVQVGRELE 95
           V  +TG+GKT+AF  +    LL+      PA+A      P AL +APTRELAVQ+  + E
Sbjct: 4   VRRKTGTGKTLAFLASTFHYLLSH-----PANAERQTNQPRALIMAPTRELAVQIHSDAE 58

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            L   TG+ + +  GG    ++ + L++G  I++GT GRL D+ +   +N+  ++ VVLD
Sbjct: 59  ALSHATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 118

Query: 156 EADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           EAD M DLGF  DI ++    P   +R  ++FSAT+S  +  LA     +A  V +  E 
Sbjct: 119 EADRMYDLGFIKDIRWLFRRMPPTAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQ 178

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
           +    I       +  ++   +  +L        I+F +T+         LA    +V  
Sbjct: 179 KTGHRIKEELFYPSNEEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGL 238

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L+G+++Q++R   L+    G   + +ATDVAARG+ +P +  V + +L  + E+ +HR G
Sbjct: 239 LTGDVAQKKRLRILEEFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIG 298

Query: 334 RTGRAGRKGMSV 345
           RTGRAG+ G S+
Sbjct: 299 RTGRAGQSGFSI 310


>gi|89894520|ref|YP_518007.1| hypothetical protein DSY1774 [Desulfitobacterium hafniense Y51]
 gi|89333968|dbj|BAE83563.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 424

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 186/340 (54%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL + G V  T +Q+  +   L  +DV   ++TGSGKT+A+ L +    L + DR    
Sbjct: 2   EALEKEGIVQPTEIQKLTIPLILSNRDVAGQSETGSGKTLAYLLPV----LQKIDRNKRE 57

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           +  L L   PT ELA+QV R+++ L  +    +  A  IG V++ R+   L+   HI+VG
Sbjct: 58  NQVLVLT--PTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHIIVG 115

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           + GR+ + I+ + ++   LK +VLDEAD++LD      ++ +L ++ K  ++L+FSAT+S
Sbjct: 116 SAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSATLS 175

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                 A  + KD     I  +      I ++  +    D+   +  ++R+     A++F
Sbjct: 176 QDAIEQAAGFLKDPAVQRITMKATVVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRALIF 235

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +    + +  + L+ H    VA+SG   ++ R  A+   R G+ ++ +A+D+AARG+D+
Sbjct: 236 INKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARGLDI 295

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ++  + + ++   P+  LHR GRTGRAG+ G++V ++ Q
Sbjct: 296 KNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQ 335


>gi|82752465|ref|XP_727312.1| RNA helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23483095|gb|EAA18877.1| RNA helicase, putative [Plasmodium yoelii yoelii]
          Length = 869

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 185/367 (50%), Gaps = 15/367 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-DRFSPA 72
           +L+E  + ++T++Q   +   L  K +   AQTG+GKT+ F + L   L  EN D ++  
Sbjct: 140 SLNENNFTHMTNIQSVSIPIVLLNKHIYAQAQTGTGKTLCFCIPLIEKLYRENIDNYNKI 199

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L I PTREL  Q+   L  L     + +   IGG    RE+  + + ++I+V TP
Sbjct: 200 LG--GLIITPTRELVFQIFEVLNMLNKYHKLNICCAIGGKDEEREKS-IFSYSNIIVCTP 256

Query: 133 GRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RMLMFSATIS 190
           GRL  H+      N+ +L  +++DE D+++D  F D+++ IL   PK+  ++ +FSATI 
Sbjct: 257 GRLLYHLENNYYCNLDYLSTLIIDEIDKLIDKSFYDNLKNILLYKPKENCQICLFSATIC 316

Query: 191 PAITTLAKNYQ-KDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             ++ + K +  KD   V+I + ++  + ++I    +  ++ ++ N +   L     K  
Sbjct: 317 KFLSIILKTFNIKDYEYVSINNNDKYIESNNIKQIYIECSIYEKINYLYTFLFSKKNKKI 376

Query: 248 IVFCSTRASVSRFTKVLAE---HLFQVVALSGELSQQERSNALQMMRDGRARVCI-ATDV 303
           IVF ST   V    +V  +    + + + L G+L Q  R N   +       VC+  TD+
Sbjct: 377 IVFFSTCKQVRFMFEVFKKIKVGVMKFLQLHGKLKQTSRLNTYHLFSKKNNFVCLFTTDI 436

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FR 361
           A RG+D   ++ VIH +   N E  +HRSGRTGR    G S+  +   +  +   L   R
Sbjct: 437 ACRGLDFASVDWVIHFDFPENLETFIHRSGRTGRFTNVGNSLIFLTNEIDNKKYFLNVLR 496

Query: 362 EANVSVV 368
           E N+ +V
Sbjct: 497 ENNIEIV 503


>gi|156055836|ref|XP_001593842.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980]
 gi|160358709|sp|A7EIX7|SUB2_SCLS1 RecName: Full=ATP-dependent RNA helicase sub2
 gi|154703054|gb|EDO02793.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 444

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 186/342 (54%), Gaps = 20/342 (5%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+S  G+ + + VQ+  +   +   DVL  A++G GKT  F L    T L + +  +  +
Sbjct: 73  AISWCGFEHPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVL----TTLQQVEVVAGET 128

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN---GAHIVV 129
           +   L +  TRELA Q+  E + + +    V + V  GGV + ++   L+N     HI+V
Sbjct: 129 S--VLVMCHTRELAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETHPHIIV 186

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGRL   +R K L ++ +K  VLDE D+MLD +  R D++ I  ++P +++++MFSAT
Sbjct: 187 GTPGRLNALVRDKYLRLNSVKVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSAT 246

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-----NAIVNILRYHG 243
           +S  +  + K + ++ + + I +E +  +    +   + L +R+     N +++ L ++ 
Sbjct: 247 LSQEVRPICKKFMQNPLEIYIDNETKL-TLYGLQQYYIKLEEREKNRRLNELLDELSFN- 304

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  +    +   K+L E  F  VA+   +SQ+ER       +D   R+C+ATDV
Sbjct: 305 --QVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDV 362

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             RGID+  + L I+ +L  + ++ LHR GR GR G KG+++
Sbjct: 363 FGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAI 404


>gi|15239115|ref|NP_196164.1| DEAD/DEAH box helicase, putative (RH18) [Arabidopsis thaliana]
 gi|75334017|sp|Q9FLB0|RH18_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 18
 gi|10176757|dbj|BAB09988.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332003492|gb|AED90875.1| DEAD-box ATP-dependent RNA helicase 18 [Arabidopsis thaliana]
          Length = 593

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/360 (31%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++  +   T VQ A +      KDV V A TGSGKT+AF + L   +L  +  F 
Sbjct: 27  IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRSTSFP 85

Query: 71  PASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQN-GAHI 127
           P     + + I+PTREL+ Q+    +   +    V +V  +GG  V  + + ++  G ++
Sbjct: 86  PKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNV 145

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGRL D + R + L+  +L+ ++LDEAD +L++GF+  + +I+   PK+RR  +FS
Sbjct: 146 LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNI----ASENRQH-------SDIDYRAVLVALSDRDNAI 235
           AT +  +  LAK   ++ VRV +     SE+ Q        S +    +      + + +
Sbjct: 206 ATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQL 265

Query: 236 VNILRYHGAKNAIVFCSTRASVSRF----TKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V++L  +  K  IVF  T ASV  +    +K+ A     ++ + G++ Q  R  AL    
Sbjct: 266 VDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFT 325

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
              +   + TDVAARG+D+P ++ V+  +   +P    HR+GRT R GR+G + VF++P+
Sbjct: 326 KASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPK 385


>gi|262163841|ref|ZP_06031581.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus VM223]
 gi|262027821|gb|EEY46486.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus VM223]
          Length = 347

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 149/269 (55%), Gaps = 4/269 (1%)

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G  I++GT GR+ D  
Sbjct: 1   MAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFY 60

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATISPAITTLA 197
           + +  N++H++AVVLDEAD M DLGF  DI F+      PK R  ++FSAT+S  +  LA
Sbjct: 61  KQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNMLFSATLSYRVQELA 120

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRAS 256
             +  +   V +  E +    I    +    +D   A++  L        AI+F +T+  
Sbjct: 121 FEHMNNPEHVVVEPEQKTGHRIQ-EELFYPSNDHKMALLQTLVEEEWPDRAIIFANTKHR 179

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +    LA    +V  L+G++ Q++R   L+    G   + +ATDVAARG+ +P +  V
Sbjct: 180 CEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHV 239

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + +L  + E+ +HR GRTGRAG  G S+
Sbjct: 240 FNYDLPDDCEDYVHRIGRTGRAGASGHSI 268


>gi|190404808|gb|EDV08075.1| pre-mRNA splicing factor ATP-dependent RNA helicase PRP28
           [Saccharomyces cerevisiae RM11-1a]
 gi|207346532|gb|EDZ73004.1| YDR243Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|323338187|gb|EGA79420.1| Prp28p [Saccharomyces cerevisiae Vin13]
          Length = 588

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELEW---LYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGTAV 538


>gi|187934350|ref|YP_001885537.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
 gi|187722503|gb|ACD23724.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
          Length = 382

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 190/361 (52%), Gaps = 12/361 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL ++     T +Q  ++N  L  KD++  + TGSGKT+A+ L +   +  E
Sbjct: 9   NLSSDIINALEKQNITVPTEIQSLVINEALENKDIMGESFTGSGKTLAYLLPIFERINTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
                      A+ +APT EL +Q+  +++ L   +G+ V     IG V+++ + + L+ 
Sbjct: 69  TKDIQ------AIILAPTHELVMQIEAQIKLLSDNSGINVKSLGIIGDVNINNQIKKLKE 122

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD      ++ I+ ++ + R++
Sbjct: 123 VKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIVKDIIKTTMRDRQL 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSA+I+P I        KD + V    ++  + +I +  V     D+   +  I+   
Sbjct: 183 MAFSASITPEIVDSLNELMKDPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++F +    +   +  L  H  +  A+SG +S++ER NA+   + G+ ++ +++D
Sbjct: 243 DPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILVSSD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V+ARG+D+ D+  V + +L    +  LHRSGRT R   KG S+ ++     N+ ++ E+ 
Sbjct: 303 VSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKYEKA 362

Query: 360 F 360
           F
Sbjct: 363 F 363


>gi|260783339|ref|XP_002586733.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
 gi|229271857|gb|EEN42744.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
          Length = 433

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/359 (34%), Positives = 188/359 (52%), Gaps = 28/359 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTL 62
           FE+ P+++ E   ++ +   + VQ       L+ KD +  AQTG+GKT+AF L  L    
Sbjct: 80  FEHYPEILTEIYKQK-FQTPSPVQSQAWPIALQGKDFIGIAQTGTGKTLAFLLPGLIHID 138

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL- 121
           L    R S    P  L ++PTRELA+Q+ +E +  Y+  G+   VC+ G    R++ +L 
Sbjct: 139 LQPCPR-SQRGGPNMLVLSPTRELALQIEKEAK-KYSYKGIK-CVCVYGGGSRRDQINLV 195

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180
           Q G  I+V TPGRL D +    LNI+ +  +VLDEAD MLD+GF   I + +LD  P  R
Sbjct: 196 QKGVEIIVATPGRLNDLLMNGILNITSVTFLVLDEADRMLDMGFEPQIMKILLDIRP-DR 254

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----I 235
           + +M SAT  P +  LA  Y K+   VN+ S +   S  +    +V ++           
Sbjct: 255 QTIMTSATWPPGVRRLATKYMKNPFMVNVGSLDLAVSAFNLSLFVVKVNKTLTVHSVTQY 314

Query: 236 VNILRYHGAKNAI-VFC------STRASVSRFTKVLAEHL--------FQVVALSGELSQ 280
           V I+     K+ +  FC        +A +    KV A+ L             + G+ SQ
Sbjct: 315 VEIIDDEEKKDRVRQFCMEEMDEEDKAMIFVGRKVTADDLSSDFSLDGINCECIHGDRSQ 374

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
            +R +AL+ ++DG  R+ IATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAG
Sbjct: 375 CDRESALEALKDGVVRILIATDVASRGIDIKDVTWVVNYDFPRDMEEYVHRVGRTGRAG 433


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 184/349 (52%), Gaps = 8/349 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I + L +  Y   T +Q   +   +  ++++  A+TGSGKT+AF L +   +L++ 
Sbjct: 519 LPEKIHQLLKKNEYEKPTPIQAQTIPAIMSGRNIIGIARTGSGKTLAFLLPMFRHVLSQ- 577

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR       + L ++PTRELA+Q+  E +      G+ V    GG ++  +  DL+ GA 
Sbjct: 578 DRPKQGEGMVGLIMSPTRELALQIYSECKKFSKVLGLRVCCVYGGANIGEQIADLKRGAD 637

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +      I++L+ V   VLDEAD M DLGF   I  I+D+    R+ +
Sbjct: 638 IVVCTPGRMIDILCANNKRITNLRRVSFLVLDEADRMFDLGFGPQIMCIIDNVRPDRQTV 697

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--Y 241
           MFSAT    +  +A+      + +     +   SD++    +     R   ++ +L   Y
Sbjct: 698 MFSATFPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQVVEVRPSETRYRRLIELLATWY 757

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  ++F + + +      +L+   +Q ++L G   Q +R   +   ++    + IAT
Sbjct: 758 HKGQ-ILIFTNKQDATDNLFGLLSRAGYQCLSLHGSKDQTDRDETISDFKNKIKTILIAT 816

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            +A+RG+D+ DL LVI+ +   + E+ +HR GRTGRAG KG +  FV+P
Sbjct: 817 PLASRGLDVKDLNLVINYDCPDHLEDYVHRVGRTGRAGNKGTAYTFVLP 865


>gi|256270725|gb|EEU05887.1| Prp28p [Saccharomyces cerevisiae JAY291]
          Length = 588

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELEW---LYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGTAV 538


>gi|254565015|ref|XP_002489618.1| Putative ATP-dependent RNA helicase, nucleolar protein [Pichia
           pastoris GS115]
 gi|238029414|emb|CAY67337.1| Putative ATP-dependent RNA helicase, nucleolar protein [Pichia
           pastoris GS115]
 gi|328350040|emb|CCA36440.1| one of two almost identical potential DEAD box RNA helicase genes
           similar to S. cerevisiae SPB4 (YFL002C) ATP-dependent
           RNA helicase involved in the maturation of 25S ribosomal
           RNA [Pichia pastoris CBS 7435]
          Length = 614

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/371 (31%), Positives = 188/371 (50%), Gaps = 39/371 (10%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E +S  GY ++T VQ + +    + KDV+V A TGSGKT+A+ + +    L +  ++ 
Sbjct: 19  ILEGISSLGYDSMTPVQASTIPLFCKHKDVVVEAVTGSGKTMAYIIPV----LEKIAQYY 74

Query: 71  PASAPL------ALAIAPTRELAVQVGRELEWLYA----KTGVVVAVCIGGVSVHRE--R 118
               PL      A+ + PTRELA QV R  + L         +   + +G V   RE   
Sbjct: 75  AQDLPLLRGDVLAMILLPTRELASQVQRNFDQLLKFQPDDNKITTQLLVGAVGSVREDVY 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQN   I++GT GR+ + +    +    L+ +VLDEAD +LDLGF  D+  I++  P+
Sbjct: 135 SFLQNRPQILIGTVGRMLEFLGSSNVKPKSLQVLVLDEADRLLDLGFSHDVLTIIEKLPR 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD--------IDYRAVLVALSD 230
           +RR  +FSATIS A + + K    + VR+ + + N   S         I Y  + +    
Sbjct: 195 QRRTGLFSATISSAGSDIFKTGLANPVRIVVKNNNSDGSKNAVPDSLGISY--ISLTTDK 252

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL-----------FQVVALSGELS 279
           +   ++ +L  +  K AIV+  T   V  F  +L   +             + ++ G+L 
Sbjct: 253 KIKTLLELLFKYHYKKAIVYLPTCVGVQYFYLLLQALINNLDLPISSEDLNLFSIHGKLE 312

Query: 280 QQERSNALQMMRDGRA--RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
              R  AL    D  A   V + TDVAARG+D+P+++LVI  +  ++P+  LHRSGRTGR
Sbjct: 313 TAARLKALNGFADSFASKSVLLTTDVAARGLDIPEVDLVIQLDPPTDPDMFLHRSGRTGR 372

Query: 338 AGRKGMSVFVI 348
           A + G ++ ++
Sbjct: 373 ANKVGKAIVML 383


>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
          Length = 617

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 179/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 111 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLL-- 168

Query: 66  NDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++
Sbjct: 169 ---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 225

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ 
Sbjct: 226 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 285

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  +  L K      +R++     R+   +    V +  +   +++  ++++ 
Sbjct: 286 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 345

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       I
Sbjct: 346 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 405

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +
Sbjct: 406 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 454


>gi|328848613|gb|EGF97819.1| hypothetical protein MELLADRAFT_51140 [Melampsora larici-populina
           98AG31]
          Length = 602

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 172/339 (50%), Gaps = 14/339 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR--FSPASAPLALAIA 81
           T +Q   L   L  +D++  A TGSGKT+AF L L    L    +  F     P+ + + 
Sbjct: 189 TPIQMQGLPVALSGRDMIGIAFTGSGKTLAFSLPLLLFALEAEKKLPFIQGEGPVGIIVC 248

Query: 82  PTRELAVQVGRELEWL---------YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P+RELA Q    +  +         Y + G ++  CIGG+S+  +   +  G HIVV TP
Sbjct: 249 PSRELARQTYETIVAMALACAQSGKYPQVGTLL--CIGGISMADQSHVMSKGFHIVVATP 306

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +  +  N+ + K + LDEAD M+D+GF +D+  I+    ++R+ L+FSAT+   
Sbjct: 307 GRLQDMLEKRKFNLDNCKYLCLDEADRMVDMGFEEDMRNIMSFFKRQRQTLLFSATMPKT 366

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I   A+N     V VN+      + D+      V    +   ++  L+       I+F  
Sbjct: 367 IRNFAENSLVKPVVVNVGRAGAANLDVIQEVEYVKQEAKMVYLLECLQ-KTPPPVIIFSD 425

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +  V    + L     + VA+ G  +Q+ER  A++  + G+  V +A+ VA++G+D  +
Sbjct: 426 NKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAIKSFKSGKKDVMVASGVASKGLDFAE 485

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ++ VI+  +    EN +H+ GRTGR+G+ G++   I  N
Sbjct: 486 IQHVINFTMPGEIENYVHQIGRTGRSGKTGIATTFINMN 524


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 176/341 (51%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+   T VQE ++   L+ + V+  A TGSGKT A+ + + + +  E+ R+ 
Sbjct: 14  IRQGLAKIGFTKPTPVQEKVIPAMLKGESVIAQAATGSGKTHAYLIPILNAI-DEDARYV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNGAHI 127
            A     +  AP+RELA Q+ R    L   +G+ +A+        R+R   R  QN   +
Sbjct: 73  QA-----IVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNKPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|308807238|ref|XP_003080930.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059391|emb|CAL55098.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1025

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/320 (35%), Positives = 169/320 (52%), Gaps = 26/320 (8%)

Query: 39  DVLVSAQTGSGKTVAF-GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           DV+  A+TGSGKT+AF G+     +               L +APTRELA+Q+  E E  
Sbjct: 92  DVVAVAKTGSGKTLAFHGMKKHGGVEG-------------LVVAPTRELAIQIQAECEKF 138

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLD 155
            A+ G    V  GG S + ++  L++    IV+GTPGRL D +  +G L++  L  +VLD
Sbjct: 139 GAERGFHSVVVYGGASAYEQKNALRSKKPCIVIGTPGRLTDLMSQEGVLSLEKLSVIVLD 198

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY---QKDAVRVNIASE 212
           EAD MLD+GF   I+ I  ++P  R+ L+FSAT   ++  LA  Y    K  VR     E
Sbjct: 199 EADRMLDMGFEPQIKTIFGATPASRQTLLFSATWPKSVRKLAACYLNQDKSRVREVFIGE 258

Query: 213 NRQHSD------IDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFCSTRASVSRFTKVLA 265
             Q  +      I  R V     ++D  + N I         ++F +T+  V    K  +
Sbjct: 259 GAQDGELAANKAITQRFVEARDHEKDEHLYNLICELPDDSRVVIFANTKRRVENLAKTFS 318

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
              F VV++ G+ SQ +R  +L+   D +  + +ATDVAARG+D+  +  VI+ +++ + 
Sbjct: 319 AEGFGVVSVHGDKSQADREASLRKFIDNKCPLMMATDVAARGLDIKGVTHVINYDMARDV 378

Query: 326 ENLLHRSGRTGRAGRKGMSV 345
           E+ +HR GRTGRAG  G +V
Sbjct: 379 ESYVHRIGRTGRAGELGAAV 398


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 67

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 68  VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 127

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 128 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 187

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 188 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 245

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 246 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 305

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 306 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 338


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  TL  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPTLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 478 HTFLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|302508367|ref|XP_003016144.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291179713|gb|EFE35499.1| ATP-dependent RNA helicase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 528

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 188/345 (54%), Gaps = 26/345 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSPASAPLALAIA 81
           T++Q++ +   ++ +D +  ++TGSGKTVAF    A  +L +   D F       A+ + 
Sbjct: 123 TAIQKSCIPEIIKGRDCIGGSRTGSGKTVAF----AGPILHKWSEDPF----GIYAVILT 174

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+ 
Sbjct: 175 PTRELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKS 234

Query: 142 KG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK--RRMLMFSATISP- 191
            G    + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P 
Sbjct: 235 SGEDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALPPSSDRQTLLFTATVTPE 294

Query: 192 --AITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG--AK 245
             A+ ++ +   K  + V  I++EN        +  L V L+ R+  +  +L   G  +K
Sbjct: 295 VRALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNHREAFLHVLLSTEGNSSK 354

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAA
Sbjct: 355 STIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAA 414

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 415 RGLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 459


>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/380 (29%), Positives = 195/380 (51%), Gaps = 12/380 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+  +GY   T +Q   L   L   DV+  A+TGSGKT AF + +   L+  ++     +
Sbjct: 21  AVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAAFLIPMIEKLVEHSNN----A 76

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ ++P+RELA+Q  +  + L   T + +A+ +GG S+  +   L     +++ TPG
Sbjct: 77  GARAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQFEQLAGNPDVIIATPG 136

Query: 134 RLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL  H+   +G+++  ++ +V DEAD + ++GF + +  I+    + R++L+FSAT+   
Sbjct: 137 RLMHHLSEVEGMSLRTVEYIVFDEADRLFEMGFAEQLRQIMSHLGESRQVLLFSATLPRL 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVF 250
           +   AK   +D   V +  E+R   D+      V   ++  A+V+++R      +  IVF
Sbjct: 197 LADFAKAGLRDPHLVRLDVESRISPDLQLSFFTVRHDEKPAALVHLVREVIPAEQQTIVF 256

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+  V    ++L      +  + G + Q  R   +   R G+ ++ + TDVAARGID+
Sbjct: 257 VATKHHVEFLYELLKTEGIDISVVYGSMDQAARKIHIAKFRAGKTKLLLVTDVAARGIDI 316

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVW 369
           P L+ VI+ +    P+  +HR GR  RAGR G S  FV  + M      L     +S   
Sbjct: 317 PLLDNVINYDFPPKPKLFVHRVGRAARAGRTGTSYSFVTSEEM---PYVLDLHLYLSKGI 373

Query: 370 EPAPSVEAIRERDAQRILQD 389
            PAP  EAI   D ++++ D
Sbjct: 374 RPAPLEEAIVA-DREKVMAD 392


>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227284279|emb|CAY16829.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 840

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 174/339 (51%), Gaps = 5/339 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+ + GY   T +Q   +   L  +DV+   +TGSGKT AF   L   ++ +       
Sbjct: 310 EAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPLIIHIM-DQPELKLG 368

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ +  APTRELA+Q+  E + L     + V    GG S+  +++  + G  I+V TP
Sbjct: 369 DGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSLWEQQKACEAGCEILVCTP 428

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D ++ K  N+  +  +V DEAD+M +LGF   +  I +     R+ L+FSAT    
Sbjct: 429 GRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPDRQTLLFSATFKRR 488

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVF 250
           +  LA++   D VR+        + DI     +    ++  D    N++R     + ++F
Sbjct: 489 LERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWDWLTRNLVRLTTEGSVLIF 548

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            + +       + L     +V+ + G++ Q +R+  +Q  +   A + +ATDVA+RG+D+
Sbjct: 549 VTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAPILVATDVASRGLDI 608

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKG--MSVFV 347
           P +  VI+ E++ + +   HR GRTGRAG KG   ++FV
Sbjct: 609 PSIHNVINYEVARDIDTHTHRIGRTGRAGAKGTAYTLFV 647


>gi|262165629|ref|ZP_06033366.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262025345|gb|EEY44013.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 363

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 166/320 (51%), Gaps = 3/320 (0%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           ++ +D++ +AQTG+GKT +F L +   L     +        AL + PTRELA+QV  ++
Sbjct: 1   MQGRDLIAAAQTGTGKTASFVLPILEKL--RQGQTQRKKRVRALILVPTRELAMQVAEKV 58

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
           E     TG+      GGV    +++ L +G  ++V TPGRL D    + +    ++ VVL
Sbjct: 59  EQYGQDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVL 118

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEAD MLD+GF + I  I+D  P + + L+FSAT+S  +  LAK    D   ++IA+   
Sbjct: 119 DEADRMLDMGFIESINKIIDCLPSEVQFLLFSATLSRKVRELAKTAVNDPYEISIAANQA 178

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             S+I    + V    +   + +++       A++F  T+   ++    L +   Q  A 
Sbjct: 179 SKSNISQWLITVDKDTKSALLSHLINEQQWDQALIFIETKHGAAKLVTQLEKRGIQAEAF 238

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
               SQ  R+  L+  + G+ +  +AT VAARGID+  L  V++ +L    +  +HR GR
Sbjct: 239 HSGRSQAIRAQLLEDFKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGR 298

Query: 335 TGRAGRKGMSV-FVIPQNMQ 353
           TGRA   G ++ FV   N +
Sbjct: 299 TGRADAVGEAISFVSKDNFK 318


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 9   YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 67

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 68  VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 127

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 128 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 187

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 188 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 245

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 246 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 305

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 306 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 338


>gi|115398680|ref|XP_001214929.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114191812|gb|EAU33512.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 553

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 195/395 (49%), Gaps = 43/395 (10%)

Query: 13  EALSERGYVNLTSVQEAILN--PDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +A+ + G+ ++T VQ  +L   PD R  D LV A+TG+GKT+AF L     LL  N   +
Sbjct: 26  QAVDKMGFADMTPVQHRVLTELPDWRS-DCLVQAKTGTGKTLAFLLPALHCLLKGNS--A 82

Query: 71  PASAPLA-LAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVS-VHRERRDLQNGAH 126
           P    +A L I PTRELA Q+ +  + L ++    +   + +GG +      R ++    
Sbjct: 83  PPRGQVAILIITPTRELAQQIAKSCDQLTSQLPKPLECHIAVGGTARASAHARFMKGAPS 142

Query: 127 IVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---R 181
           ++V TPGRL D++  +     +S+++ ++LDEAD MLD GF  D++ IL   P K    +
Sbjct: 143 VLVATPGRLKDYLSDESTAEKLSNIQTLILDEADTMLDSGFIADVKRILQLIPPKSAGWQ 202

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID------------YRAVLVALS 229
            + FSAT+SP +        KD + V + S     S I+            Y  ++ +++
Sbjct: 203 GMCFSATVSPKV--------KDVISVVLKSGYTSISTIEKNEAPTHERVPQYHVLIPSVA 254

Query: 230 DRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSN 285
                + ++L          IVF  T   V+ F  V ++ L   +V  +   LSQ  R+ 
Sbjct: 255 QTFTTLTSLLNLEMKACSKIIVFGITANMVALFAGVFSQGLTPLRVFEIHSRLSQSARTK 314

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                ++  A +  A+DV  RG+D P+++LVI   L SN E  +HR GRT RAG  G ++
Sbjct: 315 TTNQFKEAAAGILFASDVIGRGMDFPNVDLVIQVGLPSNAEQYVHRVGRTARAGNDGRAI 374

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++ Q     AE  F + N  +  +P P    I E
Sbjct: 375 ILLTQ-----AESFFLKNNRHLPIQPHPQTNMINE 404


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 173/330 (52%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +       A N      S    +
Sbjct: 36  GFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVG------ALNCVNRNISETQVI 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     V V  CIGG  +  + + L NG HI+ GTPGR+   
Sbjct: 90  ILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIKALNNGVHIISGTPGRIYHM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L   ++K +V+DEADEML+ GF++ +  I        ++++ SAT+   +  +  
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPHEVLEITN 209

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTRA 255
            +  + V++ +  +      I  +   V++     +   + ++        A+VFC+T+ 
Sbjct: 210 KFMHNPVKILVKRDELTLEGI--KQFFVSIEKEQWKYETLADLYESLTITQAVVFCNTKL 267

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    K + E  F V  +   +SQ ER + +   R  + RV I+TD+  RG+D+ ++ L
Sbjct: 268 KVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGLDVHEVSL 327

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V++ +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 328 VVNYDLPNSRESYIHRIGRSGRFGRKGVAI 357


>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 967

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 187/371 (50%), Gaps = 38/371 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +   L       S  
Sbjct: 44  KAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQILKGH----SEV 99

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   +++ TP
Sbjct: 100 VGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTP 159

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FSAT+   
Sbjct: 160 GRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFSATLPSQ 219

Query: 193 ITTLA----KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAK 245
           +T  +    ++   + +R+++  E+     +D   +      +  A+V +LR     G K
Sbjct: 220 LTQFSRAGLRSESTEFIRLDV--EHTISDTLDLWFLYTTADSKPAALVALLRKLQSMGNK 277

Query: 246 N-------------------------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           +                          IVF +TR +V  F  +L +       + G + Q
Sbjct: 278 STGDATGVAGVEGKSKGGKKGARSSKTIVFVATRHNVEFFASLLTQVGISNAPIYGSMDQ 337

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG 
Sbjct: 338 TQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGA 397

Query: 341 KGMSVFVIPQN 351
           KG+   ++  +
Sbjct: 398 KGLCASLVTHD 408


>gi|225682474|gb|EEH20758.1| ATP-dependent RNA helicase has1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 607

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 202/373 (54%), Gaps = 17/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ +  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L A 
Sbjct: 134 NLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEMLSAL 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    + ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 194 --RFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLA 248

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK-R 180
            G ++++ TPGRL DH++  +G    +LKA+V+DEAD +L++GF D++  I+   P + R
Sbjct: 249 KGVNLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDR 308

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIV 236
           + ++FSAT +  +  LA+ + +   + +N+    +++S ++       + D D     + 
Sbjct: 309 QTMLFSATQTTKVEDLARISLRPGPLYINV-DHRKEYSTVEGLEQGYVICDSDKRFLLLF 367

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 368 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 427

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  + Q  +  
Sbjct: 428 TLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFL-QPSEVG 486

Query: 356 AERLFREANVSVV 368
             +  +EA V VV
Sbjct: 487 FLKHLKEARVPVV 499


>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
          Length = 686

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 179/349 (51%), Gaps = 11/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 173 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLL-- 230

Query: 66  NDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P    A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++
Sbjct: 231 ---FRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRS 287

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IVV TPGR+ DH+R    +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ 
Sbjct: 288 MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQT 347

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
           ++FSAT++  +  L K      +R++     R+   +    V +  +   +++  ++++ 
Sbjct: 348 MLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLC 407

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       I
Sbjct: 408 TRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLI 467

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ATDVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +
Sbjct: 468 ATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFV 516


>gi|157691483|ref|YP_001485945.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157680241|gb|ABV61385.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 380

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 184/353 (52%), Gaps = 12/353 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E     G+   T++QE        ++DV+  + TG+GKT+A+ L L + +        
Sbjct: 15  IQENFQSAGFEKPTAIQEKTAEWITEKRDVIAESPTGTGKTLAYVLPLLNKIDVN----- 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +AP+REL +Q+   ++     + +     IGG ++ +++  L+   +IVV 
Sbjct: 70  -IKHPQVLILAPSRELVMQIFDVVQEFKQGSDIKAVSLIGGANIKKQQEKLKKHPNIVVA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ K L +  +K +VLDEAD++L       I+ I+ S+ K+R++L FSAT+ 
Sbjct: 129 TPGRVQELIKMKKLKMHEVKTIVLDEADQLLVPEHMKTIQAIIKSTLKERQILCFSATLK 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                L K    +   + IA    +   + +  +L    D+   +  + R     +A+VF
Sbjct: 189 DETVQLIKEMTSEPEVLKIARSEEEAQKVGHYYLLCDQRDKVKLLQKLSRLEDM-HALVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
                ++S + + LA H   +  L  E  + ER+  L+        + +ATD+AARGID+
Sbjct: 248 VRDITNLSIYAEKLAYHHVDLGVLHSEAKKAERAIILKEFEQREFPLLLATDIAARGIDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ---NMQRRAERL 359
            DL  VIHA+L  N E  +HRSGRTGRAG++G  +  V PQ    +++ A++L
Sbjct: 308 DDLPYVIHADL-PNEEGYIHRSGRTGRAGKEGAVISLVTPQEHTTLKKMAKKL 359


>gi|156550255|ref|XP_001602397.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 715

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 186/350 (53%), Gaps = 10/350 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F N P ++ E + ++ +   + +Q       L  KD++  AQTG+GKT+AF L     + 
Sbjct: 279 FRNYPDILVE-IRKQNFEKPSPIQCQAWPILLSGKDMIGIAQTGTGKTLAFLLPALIHID 337

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            ++   S  S P  L +APTRELA+Q+ +E+   Y     + AVC+ GG    ++   + 
Sbjct: 338 NQDTPRSERSGPTVLVMAPTRELALQIEKEVNKYYYHG--IKAVCVYGGGDRKKQMNIVS 395

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRR 181
            G  IV+ TPGRL D I+ + L++  +  +VLDEAD MLD+GF   I + +LD  P  R+
Sbjct: 396 KGVEIVIATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRP-DRQ 454

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNIL 239
            +M SAT  P +  LA++Y K  + V + S + +  HS +  +  +V   ++ + + +  
Sbjct: 455 TVMTSATWPPGVRRLAESYMKSPITVCVGSLDLKAVHS-VTQKIWIVDEEEKTDVLKDFF 513

Query: 240 RYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  IVF   +  V      LA       ++ G   Q +R  AL+ ++ G   + 
Sbjct: 514 HNMAPSDKVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNIL 573

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVA+RGID+ D+  V + +   + E  +HR GRTGRAG+ G S+ ++
Sbjct: 574 LATDVASRGIDIEDITHVFNYDFPRDIEEYVHRVGRTGRAGKTGESISLV 623


>gi|160886022|ref|ZP_02067025.1| hypothetical protein BACOVA_04028 [Bacteroides ovatus ATCC 8483]
 gi|156108835|gb|EDO10580.1| hypothetical protein BACOVA_04028 [Bacteroides ovatus ATCC 8483]
          Length = 444

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 189/371 (50%), Gaps = 20/371 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLPLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILSNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V+++  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAAEIPEFTGLNR-----TVKLDFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSSSSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S ++I    ++    +  E
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTS-YLILHAEEKLPSYIPEE 351

Query: 363 ANVSVVWEPAP 373
             + V+ E  P
Sbjct: 352 MEIVVLPENPP 362


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|296824810|ref|XP_002850715.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
 gi|238838269|gb|EEQ27931.1| ATP-dependent RNA helicase DBP8 [Arthroderma otae CBS 113480]
          Length = 527

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/344 (32%), Positives = 183/344 (53%), Gaps = 24/344 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q+  +   ++ +D +  ++TGSGKTVAF   +        D F       A+ + PT
Sbjct: 122 TAIQKCCIPEIIKGRDCIGGSRTGSGKTVAFAAPILHKW--SEDPF----GIFAVVLTPT 175

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+  G
Sbjct: 176 RELALQIFEQIKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKSSG 235

Query: 144 ----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK--KRRMLMFSATISPAIT 194
               + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P + 
Sbjct: 236 EDTIVGLKRVRMVVLDEADRLLSSGPGSMLPDVETCLSALPPSTNRQTLLFTATVTPEVR 295

Query: 195 TL-----AKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG--AKN 246
            L     AKN     V   I++EN        ++ L V L+ R+  +  +L   G  +K+
Sbjct: 296 ALKSMPRAKNRPPIFV-TEISTENTTIPPTLKQSYLQVPLNHREAFLHVLLSTEGNSSKS 354

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAAR
Sbjct: 355 TIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAAR 414

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 415 GLDIPSVGLVINFDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 458


>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 398

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 176/341 (51%), Gaps = 2/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L   + +  
Sbjct: 12  LTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLEKL--RHGQTQ 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  +++       +      GGV    +++ L  G  I+V 
Sbjct: 70  KKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQALIEGLDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FSAT+S
Sbjct: 130 TPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK+   +   ++IA+     S+I+   + V    +   + ++++ +     ++F
Sbjct: 190 NKVRDLAKSAIHNPFEISIAANQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQTLIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAARGID+
Sbjct: 250 IETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++
Sbjct: 310 EALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKD 350


>gi|240278937|gb|EER42443.1| ATP-dependent RNA helicase DBP8 [Ajellomyces capsulatus H143]
          Length = 539

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/362 (31%), Positives = 195/362 (53%), Gaps = 28/362 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
           P ++G +LS       T++Q+A +   L+ +D +  ++TGSGKTVAF    A+ +L +  
Sbjct: 118 PWLVG-SLSTMAIKRPTAIQKACIPEILKGRDCIGGSRTGSGKTVAF----AAPILQKWA 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D F       A+ + PTRELA+Q+  +++ + A   +   +  GG  +  +   L    
Sbjct: 173 EDPF----GIFAVILTPTRELALQIFEQIKAISAPQSLKPILITGGTEMRPQAIALSQRP 228

Query: 126 HIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK 178
           HIV+ TPGRL DHI   G +    ++  + VV DEAD +L  G      D+E  L + P 
Sbjct: 229 HIVIATPGRLADHITSSGADTICGLNRTRVVVFDEADRLLASGPGSMLPDVETCLSALPP 288

Query: 179 K--RRMLMFSATISP---AITTLAKNYQKDAVRVN-IASENRQH--SDIDYRAVLVALSD 230
              R+ L+F+AT++P   A+ ++ +   K  + V  +++EN+      +    + V L+ 
Sbjct: 289 STARQTLLFTATVTPEVRALKSMPRPANKLPIFVTEVSTENKASIPPTLKQTYLQVPLTH 348

Query: 231 RDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           R+  +  ++    +  K AI+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 349 REAFLHTLISTAANSQKPAIIFCNRTKTADLVERMLRRLGHRVTSLHSLLPQSERTANLS 408

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVAARG+D+P + LVI+ ++  NP++ +HR GRT RAGR+G +V ++
Sbjct: 409 RFRASAARILVATDVAARGLDIPSVSLVINFDVPRNPDDYVHRVGRTARAGREGEAVTLV 468

Query: 349 PQ 350
            Q
Sbjct: 469 GQ 470


>gi|307104599|gb|EFN52852.1| hypothetical protein CHLNCDRAFT_26393 [Chlorella variabilis]
          Length = 313

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           DV+  A+TGSGKT AF + L   L   + R    +   A+ ++PTRELA+Q  + ++ L 
Sbjct: 5   DVVGMARTGSGKTAAFVIPLVERLKEHSAR----AGARAVILSPTRELALQTHKVVKELG 60

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEA 157
             + +  AV +GG S+  +  +L     I+V TPGRL  H++  +G+++   + +V DEA
Sbjct: 61  RHSNLRTAVLVGGDSMEAQFAELAAFPDILVATPGRLMHHLQEVEGMSLRSCEYLVFDEA 120

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D + ++GF + +  IL S    R+ L+FSAT+  A+   A+   K+   V + ++ +   
Sbjct: 121 DRLFEMGFAEQLRQILASVGPSRQTLLFSATMPKALAEFARAGLKEPELVRLDADTKISP 180

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           D+      V   D+  A++ +LR   A +   I+F STR  V     +LA+   +   + 
Sbjct: 181 DLALAFFTVRWEDKPAALLYLLREVVAADQPTIIFASTRHHVEFLAGLLAQDGLEAAYVH 240

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G + Q  R   +   R GR R+ + TDVAARG+D+P L+ V+H +    P+  +HRSGR 
Sbjct: 241 GNMDQAARKIHIAKFRAGRVRLLVVTDVAARGLDIPLLDNVVHYDFPPKPKLFVHRSGRA 300

Query: 336 GRAGRKGMS 344
            RAGR G S
Sbjct: 301 ARAGRSGTS 309


>gi|195390289|ref|XP_002053801.1| GJ23143 [Drosophila virilis]
 gi|194151887|gb|EDW67321.1| GJ23143 [Drosophila virilis]
          Length = 670

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 191/342 (55%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P 
Sbjct: 191 QAIAEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPR 248

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TP
Sbjct: 249 NGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATP 308

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT + 
Sbjct: 309 GRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTE 368

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            I  L+K   +K+ + V +  +N++ + ++   +  +V  S+ R   +   L+ +  K  
Sbjct: 369 RIDALSKLALKKEPIYVGV-HDNQETATVEGLEQGYIVCPSEKRLLVLFTFLKKNRKKKV 427

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++       V ++ G+  Q +R++      +  + + + TDVAARG
Sbjct: 428 MVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTSTFFQFCNAESGILLCTDVAARG 487

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           +D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 488 LDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLML 529


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 180/349 (51%), Gaps = 17/349 (4%)

Query: 4   FENIPQVIGEAL----SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FENI   I E L       G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 17  FENIG--IDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVG-- 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               A N      S    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 73  ----ALNCVNRNLSETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 129 ALSNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIV 236
            ++++ SAT+   +  +   +    V++ +  +      I  +   V++     +   + 
Sbjct: 189 TQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGI--KQFFVSIEKEQWKYETLA 246

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + R
Sbjct: 247 DLYESLTITQAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFR 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 307 VLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAI 355


>gi|57899404|dbj|BAD88051.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|215694706|dbj|BAG89897.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 583

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 167/305 (54%), Gaps = 9/305 (2%)

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIV 128
           +P S P  L +APTRELA Q+  E    + ++  + + C+ GG     + RDL  G  +V
Sbjct: 9   NPRSGPTVLVLAPTRELATQILEEA-VKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVV 67

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++AT
Sbjct: 68  VATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTAT 127

Query: 189 ISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
               +  +A++     V+V I S +    +S I     L+  S++   +  ILR   + +
Sbjct: 128 WPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGS 187

Query: 247 AI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            + +FC+T+    +  + L    F   A+ G+ SQ ER   L   R GR+ + +ATDVAA
Sbjct: 188 KVLIFCTTKRMCDQLARTLTRQ-FGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAA 246

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFRE 362
           RG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++  F   Q+ +  A+  ++   
Sbjct: 247 RGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEG 306

Query: 363 ANVSV 367
           AN  V
Sbjct: 307 ANQRV 311


>gi|156384956|ref|XP_001633398.1| predicted protein [Nematostella vectensis]
 gi|156220467|gb|EDO41335.1| predicted protein [Nematostella vectensis]
          Length = 583

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 190/362 (52%), Gaps = 20/362 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q    ++ +  +  +T VQ A +   +  KDV V A TGSGKT+AF + +   +L  
Sbjct: 11  SLSQTTLNSMKKMNFSTMTPVQAAAIPLFMSNKDVAVEAVTGSGKTLAFVIPIIEIILRR 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQ-N 123
            D+        AL I PTRELA Q+   +  L      +   + IGG   + + +  +  
Sbjct: 71  EDKLKKHEIG-ALIITPTRELAQQIDEVVSTLVEDIPNIRRLLLIGGADPNADLKAFKYE 129

Query: 124 GAHIVVGTPGRLCDHI--RGKGLNI-SHLKAV---VLDEADEMLDLGFRDDIEFILDSSP 177
           GA+I++GTPGRL D +  +  G+N+ SHLK++   VLDEAD +LD+GF   I  IL   P
Sbjct: 130 GANIIIGTPGRLEDFLARQQDGINLASHLKSLEVLVLDEADRLLDMGFEASINTILGYLP 189

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE-------NRQHSDIDYRAVLVALSD 230
           K+RR  +FSAT +  +  L +   ++ VRV +  +        R  S +    ++    +
Sbjct: 190 KQRRTGLFSATQTDEVEALVRAGLRNPVRVTVREKLTKTKNVQRTPSTLQNFYLICRSHE 249

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + +V  L+    K  +VF ST A V+ F+K L + L    ++AL G++ +  R     
Sbjct: 250 KFSQLVAFLKARKDKKNMVFFSTCACVNYFSKALTKFLPNVHIMALHGKM-KSNRHKIFD 308

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFV 347
             R   + + + TDV ARG+D+P++  VI  +  S+    +HR GRT R G +G + VF+
Sbjct: 309 SFRKLESGILVCTDVMARGVDIPEVNWVIQYDPPSSANAFVHRCGRTARIGNEGNAVVFL 368

Query: 348 IP 349
           +P
Sbjct: 369 LP 370


>gi|322706702|gb|EFY98282.1| ATP-dependent RNA helicase dbp10 [Metarhizium anisopliae ARSEF 23]
          Length = 892

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 186/369 (50%), Gaps = 38/369 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++ +G+   T +Q   +   L  KDV+  A+TGSGKT AF + +   L A + RF   
Sbjct: 96  KAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIPMIEKLRAHSGRF--- 152

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++P+RELA+Q  + ++     T +   + +GG S+  +   +     IV+ TP
Sbjct: 153 -GSRALILSPSRELAIQTLKVVKEFARGTDLKAILLVGGDSLEEQFGYMAANPDIVIATP 211

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR   H++ +  L++S +K VV DEAD + ++GF   +  IL + P  R+ L+FSAT+  
Sbjct: 212 GRFL-HLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSRQTLLFSATLPA 270

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL------------ 239
           ++   A+   +D   V + +E +   D++     V  ++++ A+++IL            
Sbjct: 271 SLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILHDVIKMPMGTPE 330

Query: 240 ------------RYHGAKNA--------IVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                       R  G   +        I+F +T+  V     VL    F V  + G L 
Sbjct: 331 IAKQDSEKASKKRKRGESGSGKPTEHSTIIFTATKHHVEYLANVLQRAGFAVSHVYGSLD 390

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q  R N ++  R GR  + + TDVAARGID+P L  VI+ +  S P+  +HR GRT RAG
Sbjct: 391 QTARRNQVEDFRRGRTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFVHRVGRTARAG 450

Query: 340 RKGMSVFVI 348
           ++G S  ++
Sbjct: 451 QRGWSYSLV 459


>gi|295397327|ref|ZP_06807419.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
 gi|294974401|gb|EFG50136.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
          Length = 450

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 181/353 (51%), Gaps = 13/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +AL++  +   + +Q  ++      +DV+  +QTGSGKT AF L L + + AE
Sbjct: 7   NLKPFINDALADLNFYEPSPIQATVIPVIQSGRDVIAQSQTGSGKTHAFLLPLLNKITAE 66

Query: 66  NDRFSPASAPLALAIAPTRELA---VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N         L +  AP+RELA    Q GR++   ++   + +    GG    ++   L+
Sbjct: 67  N------HTQLVIT-APSRELAEQLYQAGRQI-LSFSDEDLHIERAFGGTDTVKQANRLE 118

Query: 123 NGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           N    +VV TPGRL D I  + +++  +   V+DEAD  LDLGF ++++ I    PK   
Sbjct: 119 NAVPQVVVATPGRLLDLINNQLISVHQVTDFVVDEADMTLDLGFLNEVDQIAGRMPKSLN 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M +FSATI   +    + Y  +   + I + ++    ID   V V   DR   + + L  
Sbjct: 179 MYVFSATIPDKLKPFLRKYLSNPEWITIEARHKISDTIDNYLVPVKGRDRKALLFDTLTI 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++F +T+ +V    K L      V  + G+L  +ER   ++ +++   +  +AT
Sbjct: 239 GQPYLALIFANTKETVQELYKYLKSQGLNVGQIHGDLPARERRRVMKQVQNLDFQYVVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           D+AARGID+  +  VI+ E+ +  E  +HR GRTGR G+ G ++ F IP  ++
Sbjct: 299 DLAARGIDIDGVSHVINYEVPNELEFFIHRVGRTGRQGKPGTAITFYIPDELK 351


>gi|19073987|ref|NP_584593.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
 gi|19068629|emb|CAD25097.1| PUTATIVE ATP-DEPENDENT RNA HELICASE (DEAD box family)
           [Encephalitozoon cuniculi GB-M1]
          Length = 503

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 181/341 (53%), Gaps = 32/341 (9%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q+  +   +  ++++  A TG GKT+ F       L+   +R      P A  
Sbjct: 117 YSAPTIIQKYCIPSLVDGRNLICRAPTGMGKTMCF-------LIPIIERHRQMKKPQACI 169

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL--QNGAHIVVGTPGRLCD 137
           I+PTREL  Q+  E   L A + + V      VS++ +++DL   +G  IVV TPGRL D
Sbjct: 170 ISPTRELCEQIRVEASKLVAGSRIRV------VSIYGKKQDLPSYSGVDIVVATPGRLID 223

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  K +++S ++  VLDEAD++LD+GF   I  I    PK  +  +FSAT SP +T + 
Sbjct: 224 LLHRKKVDLSEIRMFVLDEADKLLDMGFEIPIREIHGFVPKNTQTCLFSATYSPKLTRMI 283

Query: 198 KNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGA------- 244
             +  +D V + I+SE  ++     R  +V + ++   ++NIL+       G+       
Sbjct: 284 NYFLPEDKVSIEISSETLKN----IRQEIVEVRNKKKMLLNILKGPDINLKGSWRMEVQP 339

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF   ++      KVL +     V+L G+  Q +R  AL+  R+GR  V +AT VA
Sbjct: 340 DKVLVFVERKSECGEVEKVLKKSGILCVSLHGDKEQADRDEALKGFRNGRFPVMVATSVA 399

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ARGID+ D++LVI+ ++  + +  +HR GRTGR G+ G S+
Sbjct: 400 ARGIDIKDVKLVINYDIPKDIKEYIHRIGRTGREGKSGKSI 440


>gi|332025244|gb|EGI65418.1| Putative ATP-dependent RNA helicase DDX10 [Acromyrmex echinatior]
          Length = 795

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 204/395 (51%), Gaps = 20/395 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +V  ++L+E  YV +T +Q+  +   L+  D+L +A+TGSGKT+AF + +   
Sbjct: 42  FSDLPLSRVTLKSLTENNYVEMTDIQKQSIGLALQGNDILGAAKTGSGKTLAFLIPILEI 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +++      +L I PTRELA Q+   L  +     +   + IGG  +  E++ +
Sbjct: 102 LYCK--QWTRLDGLGSLIITPTRELAYQIYETLRKVGQYHSISAGLIIGGKDLKFEKKRM 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  ++++ TPGRL  H+    L N  +++ +VLDEAD  LD+GF   +  I+++ P KR
Sbjct: 160 -DQCNVIICTPGRLLQHMDENPLFNCVNMQILVLDEADRCLDMGFEKTMNSIIENLPPKR 218

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVN 237
           + L+FSAT + ++  LA+   KD + V++  E+  H+    +    ++ +L D+   + +
Sbjct: 219 QTLLFSATQTKSVKDLARLSLKDPLYVSV-HEHSAHTTPEGLQQSYIICSLEDKLAMLWS 277

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
            +R H  +  IVF S+   V    +          ++AL G L Q  R N  +     + 
Sbjct: 278 FIRNHVKQKIIVFFSSCKQVKYIYEAFCRLRPGISLLALYGTLHQLRRMNIYESFCKKQH 337

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G S+ V+  + +  
Sbjct: 338 AVLFATDIAARGLDFPTVNWVVQMDCPEDVNAYIHRAGRTARFKSGGESLLVLLPSEEMI 397

Query: 356 AERLFR--------EANVSVVWEPAPSVEAIRERD 382
            ERL +        + N + +  P   +EA+  RD
Sbjct: 398 IERLKQRKIPINMIKINPNKLQSPHRKLEALLARD 432


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 171/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +  +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     + +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score =  164 bits (415), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 833

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 172/343 (50%), Gaps = 11/343 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 317 NLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLL-- 374

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + P   P +    + PTRELAVQ       L   T +     IGG S+  +   L+ 
Sbjct: 375 ---YRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENVLKK 431

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 432 RPDIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 491

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNIL 239
           ++FSAT++ ++  L +      VR+ + ++ +    +    V +     D    +++++ 
Sbjct: 492 MLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLC 551

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +   A   I+F   +    R   +      +   L G +SQ++R  +++  RDG+    +
Sbjct: 552 QQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLL 611

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           ATDVA+RG+D+  +E VI+ E     E  LHR GRT RAGR G
Sbjct: 612 ATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSG 654


>gi|326470936|gb|EGD94945.1| ATP-dependent RNA helicase DBP8 [Trichophyton tonsurans CBS 112818]
 gi|326478499|gb|EGE02509.1| ATP-dependent RNA helicase DBP8 [Trichophyton equinum CBS 127.97]
          Length = 528

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 185/343 (53%), Gaps = 22/343 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q++ +   ++ +D +  ++TGSGKTVAF   +        D F       A+ + PT
Sbjct: 123 TAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILHKW--SEDPF----GIYAVILTPT 176

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+  G
Sbjct: 177 RELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKSSG 236

Query: 144 ----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK--RRMLMFSATISP--- 191
               + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P   
Sbjct: 237 EDTIIGLRRVRMVVLDEADRLLTSGPGSMLPDVETCLSALPPSSDRQTLLFTATVTPEVR 296

Query: 192 AITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG--AKNA 247
           A+ ++ +   K  + V  I++EN        +  L V L+ R+  +  +L   G  +K+ 
Sbjct: 297 ALKSMPRAKNKPPIFVTEISTENTTIPPTLKQTYLQVPLNHREAFLHVLLSTEGNSSKST 356

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAARG
Sbjct: 357 IIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANLSRFRASAARLLVATDVAARG 416

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 417 LDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 459


>gi|261332680|emb|CBH15675.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 604

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 196/372 (52%), Gaps = 20/372 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++    ++  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +     
Sbjct: 118 PHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIVEIITRVG- 176

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F   S   A+ I PTREL +Q+ G  L+ L    G V    CIGG+S  +E   L +G 
Sbjct: 177 -FRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAFKLVSGM 235

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH++        +L  + +DEAD +LD GF DD+  I+   P++R+  +
Sbjct: 236 MVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPRQRQTFL 295

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIA-SENRQHSD-IDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ +  + +++   E++   D ++   V+     R   + + +R 
Sbjct: 296 FSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVLYHFVRR 355

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V   T
Sbjct: 356 NLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLFTT 415

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P   +HR GRT RAGR+G ++ F++PQ      E+LF
Sbjct: 416 DVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRRGNALMFLLPQ------EKLF 469

Query: 361 -----REANVSV 367
                 +A+VSV
Sbjct: 470 LKYLHDDAHVSV 481


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 192/398 (48%), Gaps = 43/398 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P    + +  + Y   T++Q       L  +D++  AQTGSGKT+A+ L  A   +   
Sbjct: 122 FPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILP-AIVHITHQ 180

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQN-- 123
                   P+AL +APTRELA Q+ +++   + K   +   C+ GG     + RD +   
Sbjct: 181 PYLQRGDGPMALVLAPTRELAQQI-QQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFG 239

Query: 124 -----------------------GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
                                  G  I + TPGRL D +    +N+     +VLDEAD M
Sbjct: 240 ALCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRM 299

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQ 215
           LD+GF   I  I++      + LM+SAT    + +LA+++ KD ++VNI      + +R 
Sbjct: 300 LDMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRI 359

Query: 216 HSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
              +D    +   SD++N ++ + +          ++F  T+  V   T+ +  + +  +
Sbjct: 360 VQIVD----VCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNGWPSI 415

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            + G+ SQ ER   L   R GR+ + +ATDVAARG+D+ D+  VI+ +     E+ +HR 
Sbjct: 416 CIHGDKSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHRI 475

Query: 333 GRTGRAGRKGMS-VFVIPQNMQRRAERL--FREANVSV 367
           GRT R+ + G +  F  P NM++  E +   +EAN ++
Sbjct: 476 GRTARSNKTGTAYTFFTPGNMKQAKELIAVLKEANQAI 513


>gi|157871728|ref|XP_001684413.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|68127482|emb|CAJ05381.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 900

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 17  ERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ERG Y  LT VQ+  L+  L   DVL +A+TGSGKT+ F + +   L  E  R+S     
Sbjct: 85  ERGHYTILTPVQKGTLHLALAGLDVLGAAKTGSGKTLCFVIPVLERLYRE--RWSSDMGV 142

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L +   I+VGTPGR+
Sbjct: 143 GALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRL-HAISIIVGTPGRV 201

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             H++    L + +L+   +DEAD +LD+GFR+ I  IL   P +R+ L+FSAT +  + 
Sbjct: 202 LHHLQDDAELVLDNLQLFCMDEADRLLDMGFREAITSILAYLPPQRQSLLFSATQTTDVQ 261

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            LA+   K+   V+  +     + +      V+V L  + +A++  L+ H     +VF S
Sbjct: 262 MLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHKKLDALLMFLKRHPNDKIVVFVS 321

Query: 253 TRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T   V      F+K+L +     + L+ ++ Q  R          ++ V   TDVA+RG+
Sbjct: 322 TCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGL 381

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           D P +  V+  +   + +  +HR+GRT RAG +G+S +F+ P+
Sbjct: 382 DFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPR 424


>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
 gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica]
          Length = 753

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 201/369 (54%), Gaps = 14/369 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + +S  GY   T +Q   +   L  KD++  A TGSGKT A+ + +   LL +
Sbjct: 258 NLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYK 317

Query: 66  NDRFSPASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +   S  +A   + + PTREL++QV   G++L      +GV   + +GG+++  + ++L+
Sbjct: 318 S---SKVAATKVVVLTPTRELSIQVADVGKKLAQYV--SGVRFGLAVGGLNLRVQEQELK 372

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               +V+ TPGR  DH+R     N+  ++ +V+DEAD ML+ GF+ ++  IL   PKKR+
Sbjct: 373 TRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQ 432

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL 239
            L+FSAT++ +I++L +      VRV I    +  S +    V +   D  +   + +IL
Sbjct: 433 TLLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALLASIL 492

Query: 240 R-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  I+F + + +  R   +L     ++  L G LSQ++R  ++   +     + 
Sbjct: 493 KKMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLEVPIL 552

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+A+RG+D+P +E V++ ++       LHR GRT RAGR+G S+ ++ +    RA  
Sbjct: 553 VCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAADRA-- 610

Query: 359 LFREANVSV 367
           + REA  SV
Sbjct: 611 IVREAIKSV 619


>gi|84997461|ref|XP_953452.1| DEAD-box family ATP-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304448|emb|CAI76827.1| DEAD-box family ATP-dependent helicase, putative [Theileria
           annulata]
          Length = 535

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 114/357 (31%), Positives = 191/357 (53%), Gaps = 15/357 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE I + I +AL+E  ++  T +Q   + P L+ KDVL  A+TGSGKT+AF + +A  L 
Sbjct: 75  FE-ISEPILKALTENNFIKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPMAEVLY 133

Query: 64  AENDRFSPASAPLALAIAPTRELAVQ---VGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
               +F P +    L I+PTREL++Q   VG+E+ ++L    G+V    +GG +  +E  
Sbjct: 134 QV--KFMPRNGTGGLIISPTRELSLQIFEVGKEICKYLPQTLGLV----MGGANRKQEEF 187

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +I++ TPGRL DH++  KG    +L   V+DEAD +L +GF  ++  I+   PK
Sbjct: 188 KLVKGVNILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPK 247

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+  +FSAT +  +  LA+   K  + + ++  EN   S ++   V+    +R   +  
Sbjct: 248 NRQTSLFSATHTSNVDDLARLSLKSPIFLQVSGMENATVSGLEQGYVVCEAENRFMLLYT 307

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  +VF S+  SV    ++L      V  + G+  Q  R              
Sbjct: 308 FLKKNLDKKIMVFFSSCNSVKFHDELLNYVDIPVKCIHGKKKQTNRLTTYYSFCKATKGH 367

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV-FVIPQNM 352
            + TDVAARG+D+P ++ ++  +   +P++ +HR GRT R    KG ++ F++P+ +
Sbjct: 368 LLCTDVAARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEEL 424


>gi|261207791|ref|ZP_05922476.1| helicase [Enterococcus faecium TC 6]
 gi|289566243|ref|ZP_06446675.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|294616582|ref|ZP_06696358.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
 gi|260078174|gb|EEW65880.1| helicase [Enterococcus faecium TC 6]
 gi|289161950|gb|EFD09818.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|291590532|gb|EFF22265.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
          Length = 449

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 176/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + AE +   
Sbjct: 13  INEVLTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINAEKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|146306338|ref|YP_001186803.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574539|gb|ABP84071.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 441

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/354 (31%), Positives = 184/354 (51%), Gaps = 6/354 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E  +V  T VQ A + P L  KD+ V AQTGSGKT AF L L + LL + +     
Sbjct: 13  KAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNRLLGDGNSQQRV 72

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL + PTRELA Q  +E+E     T +   +  GG    + +  +     I++GTP
Sbjct: 73  SI-RALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDF-KVQAAMMRKIDILIGTP 130

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +H     L +  ++ +V DEAD MLD+GF +D + + ++    + +L  + T    
Sbjct: 131 GRLIEHANAGNLPLGDVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTLLFSATTGGNG 190

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHGAKNAIVFC 251
           +  +     K+   + + S ++ +     + +    +     +V+ +L       AIVF 
Sbjct: 191 LREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNHHKEQLVDWLLANETYDKAIVFT 250

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR    R    L     +   L GE  Q++R  A++ +R G  +V +ATDVAARG+D+ 
Sbjct: 251 NTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVLVATDVAARGLDVD 310

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFRE 362
            L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I     N+    ER  ++
Sbjct: 311 GLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHTDWNLMSSIERYLKQ 364


>gi|50556322|ref|XP_505569.1| YALI0F18238p [Yarrowia lipolytica]
 gi|74659661|sp|Q6C193|SPB4_YARLI RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|49651439|emb|CAG78378.1| YALI0F18238p [Yarrowia lipolytica]
          Length = 626

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/398 (29%), Positives = 200/398 (50%), Gaps = 46/398 (11%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS---TLLAENDRF 69
           + + + G+ ++T VQ +++      KDV+V A TGSGKT+AF + L      LL E    
Sbjct: 16  DTMEQFGFTDMTPVQASVIPMFAGNKDVIVEAVTGSGKTIAFLVPLIQRMLNLLKEGPAV 75

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---------- 119
           S      ++ ++PTRELA Q    L+ +  + G   A     +++ ++++          
Sbjct: 76  S--GRVYSVVVSPTRELARQTYEVLQSIL-EMGCPEADASDKITLEKKKKGKAAPTMPKK 132

Query: 120 ---------------DLQN----GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
                          DL+N       I+V TPGRL + +R   +  S   ++VLDEAD +
Sbjct: 133 IRGQLIMGGDLPSHMDLKNFLRDKPQIIVATPGRLLELLRAPQIKTSAFDSLVLDEADRL 192

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSD 218
           LDLGF  DI  I++  PK+RR  +FSATI+ AI  L K   ++ V+  V +  +  Q + 
Sbjct: 193 LDLGFGRDITSIINILPKQRRTGLFSATITDAIQNLVKIGLRNPVKIVVKVGGKKEQKTP 252

Query: 219 IDYRAVLVALSDRDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLA------EHLFQ 270
           +      V L  R+     +N+L  +  + AIV+  T A+V+ + ++ +      E  ++
Sbjct: 253 LSLGLSYVVLEPREKLAYALNLLSIYPYRKAIVYLPTCAAVTYYQQMFSHLNEGREEPYE 312

Query: 271 VVALSGELSQQERSNAL-QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           +  L G+L    R   L +  + G   + + TD+AARG+D+P+++LV+  +  S+ +   
Sbjct: 313 IYGLHGKLPSSTRIKILNKYQKTGAQAILMTTDIAARGLDIPEVDLVVQLDPPSDADTFQ 372

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           HR GR GRAGR+G ++ ++ +  +     L R   V +
Sbjct: 373 HRCGRAGRAGRQGQAIVLLHKGREEEYVDLMRVRKVKL 410


>gi|84468310|dbj|BAE71238.1| hypothetical protein [Trifolium pratense]
          Length = 402

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 152/270 (56%), Gaps = 4/270 (1%)

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGRL D I G+ L +S ++ +VLDEAD+ML +GF +D+E IL++ P +R
Sbjct: 6   LSRGVDVVVGTPGRLIDLINGRSLQLSEIQYLVLDEADQMLAVGFEEDVESILETIPSQR 65

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++++FSAT+   +  L++ +  +   +++    E +    I   AV      +   +  +
Sbjct: 66  QIMLFSATMPGWVKKLSRKHLNNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRILSGL 125

Query: 239 LRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  +G     IVF  T+      +  L   +    AL G++SQ +R   L   R GR  V
Sbjct: 126 ISAYGKGGKTIVFTRTKRDADEISYSLTSSIASK-ALHGDISQYQRERTLDGFRQGRFTV 184

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P+++L+IH EL   PE  +HRSGRTGRAG++G +V +   + +R   
Sbjct: 185 LVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMFTASQKRTVI 244

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            L R+      +   P +E + E   ++++
Sbjct: 245 SLERDVGSRFEFIRPPPMEDLPELPTRQVV 274


>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 439

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 197/409 (48%), Gaps = 31/409 (7%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   + +Q   +   L   DV+  AQTG+GKT AF L L   L     +++   
Sbjct: 20  AIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLMKL-----KYAQGH 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL IAPTREL +QV   +  L   T +      GG+   ++ +++  G  I+V TPG
Sbjct: 75  DPRALIIAPTRELVMQVYENILELGKYTDLRTVCLYGGIGPKKQAQEVAEGCDIIVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L    +K  +LDEAD M+D+GF   I  +L+  P K++ L FSAT    +
Sbjct: 135 RLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRRVLELLPMKKQNLFFSATFPEKV 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--VNILRY----HGAKNA 247
              A  +     +V +  E      I+      +L    N +  +N+L+Y          
Sbjct: 195 EKYAYEFTDFPEKVEVTPETMTAELIEQ-----SLYHVPNFLTKINLLKYLFENEDFSRV 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++F  TR + +     +   + + V  +    +Q  R NA+   + G  RV ++TDV AR
Sbjct: 250 LIFVRTRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLVSTDVTAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR--RAERLFREA 363
           GID+ ++  VI+ E+ +  E+ +HR GRTGRA   G+++ FV P ++    + E L ++ 
Sbjct: 310 GIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKIEELIQK- 368

Query: 364 NVSVV----------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + V+            P+   +  +E D Q+ L++P F  +    +KK
Sbjct: 369 KIKVIDLPKEIELMDTLPSEKKDMEQEIDRQKHLENPDFQGAFHEKKKK 417


>gi|328859369|gb|EGG08478.1| hypothetical protein MELLADRAFT_47739 [Melampsora larici-populina
           98AG31]
          Length = 404

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 163/313 (52%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++  ++           A  AL
Sbjct: 50  GFERPSAIQQRAIIPVIKGHDVIAQAQSGTGKTATFSISILQSIDVN------IKACQAL 103

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + L  L     +     +GG SV      LQ G H++VGTPGR+ D 
Sbjct: 104 VLAPTRELAQQIQKVLVALGDYLNIECYAAVGGTSVREGMAKLQEGVHVIVGTPGRVYDM 163

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L   H+K   LDEADEML  GF+D I  +    P   ++++ SAT+   +  +  
Sbjct: 164 IQRRALKTDHIKIFTLDEADEMLSRGFKDQIYDVFQLLPPTTQVVLLSATMPQDVLEVTS 223

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + ++ +R+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 224 KFMREPIRILVKRDELTLEGIKQFYIAVEKEEWKLDTLCDLYETVTITQAVIFCNTRRKV 283

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    F V ++ G++ Q +R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 284 DWLQEKLTGREFTVSSMHGDMEQGQREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVI 343

Query: 318 HAELSSNPENLLH 330
           + +L  + EN +H
Sbjct: 344 NYDLPVSKENYIH 356


>gi|255944863|ref|XP_002563199.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587934|emb|CAP86003.1| Pc20g06740 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 396

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P ++  DV+  AQ+G+GKT  F ++    +  E        A  AL
Sbjct: 42  GFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPE------VKACQAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG +V  +   L+ G  +VVGTPGR+ D 
Sbjct: 96  ILAPTRELAQQIQKVVVAIGDFMSLDCHACIGGTNVREDMNALRAGPQVVVGTPGRVHDM 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ + L+ + +K  +LDEADEML  GF + I  I    P+  ++ + SAT+   +  +  
Sbjct: 156 IQRRVLSTTAMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVTLLSATMPQDVLEVTT 215

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 216 KFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 275

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 276 DWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 335

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 336 NYDLPANRENYIH 348


>gi|157111113|ref|XP_001651396.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108878542|gb|EAT42767.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 603

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 177/330 (53%), Gaps = 6/330 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF + +    L    +F P 
Sbjct: 123 KAIAEMGFTKMTEIQAKAIPPLLEGRDLIGSAKTGSGKTLAFLIPVVE--LINKLQFKPR 180

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTRELA+Q+   L+ L A       + +GG S H E   L  G +IVV TP
Sbjct: 181 NGTGVIIISPTRELAMQIFGVLKELMAHHHHTYGLLMGGASRHTENEKLGKGLNIVVATP 240

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++G       +L+ +V+DE D +L++GF +D++ I+   PKKR+ ++FSAT + 
Sbjct: 241 GRLLDHLKGTPNFLFKNLQCLVIDECDRILEIGFEEDMKQIISILPKKRQTMLFSATQTS 300

Query: 192 AITTLAK-NYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               L K   + + + V +     +   + ++   ++     R   +   L+ +  K  +
Sbjct: 301 RTEELGKLALKSEPIYVGVDDHKTEATVTGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 360

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R++      +  + + + TDVAARG+
Sbjct: 361 VFFSSCLSVKYHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAESGILLCTDVAARGL 420

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           D+P ++ ++  +  ++ +  +HR GRT R 
Sbjct: 421 DIPAVDWIVQYDPPNDTKEYIHRVGRTARG 450


>gi|151942219|gb|EDN60575.1| RNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 588

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 26/329 (7%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-----APLALAIAPTRELAVQVGR 92
           +D L  A TGSGKT+AF + +   +     R  P S      P AL +APTREL  Q+ +
Sbjct: 215 RDFLGVASTGSGKTLAFVIPILIKMSRSPPR--PPSLKIIDGPKALILAPTRELVQQIQK 272

Query: 93  ELEW---LYAKTG---VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           E +    +++K       V   +GG S+      L  G  I+V TPGRL D +    L +
Sbjct: 273 ETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPGRLIDSLENHLLVM 332

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSATISPAITTLAKNY 200
             ++ +VLDEAD+M+DLGF D +  IL        S   R+ LMF+AT++P I  +A  Y
Sbjct: 333 KQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLMFTATMTPVIEKIAAGY 392

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---AIVFCSTRASV 257
            +  V   I  E      I     +V  +D D      L+   AK     I+F + + + 
Sbjct: 393 MQKPVYATIGVETGSEPLIQQ---VVEYADNDEDKFKKLKPIVAKYDPPIIIFINYKQTA 449

Query: 258 SRFT-KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                K   E   +V  L G  SQ++R ++LQ+ R  + ++ IAT+VAARG+D+P++ LV
Sbjct: 450 DWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIATNVAARGLDIPNVSLV 509

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++ ++S   ++ +HR GRTGRA  +G +V
Sbjct: 510 VNFQISKKMDDYIHRIGRTGRAANEGSAV 538


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 171/327 (52%), Gaps = 9/327 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--ASAPLALAIA 81
           T +Q   L   L  +D++  A +G GKT+ F L      + E  +        P AL + 
Sbjct: 141 TPIQMQGLPAVLMGRDIIGVAPSGQGKTLVFLLPALLQCIEEEMKMPVIRGEGPFALILL 200

Query: 82  PTRELAV---QVGRELEWLYAKTGVVVAVC---IGGVSVHRERRDLQNGAHIVVGTPGRL 135
           P+ ELA+   ++ ++    + K G     C   IGG+ +  + + ++NG HIV+GTPGR+
Sbjct: 201 PSHELAILTYELAKQYCQKFQKKGFPAIHCLLGIGGMDMSSQLQSIRNGVHIVIGTPGRI 260

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K +N+   + +VLDEAD MLD  F  +I  IL+     R+ ++FSAT+   I  
Sbjct: 261 SDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGPRQTMLFSATLPKKIQE 320

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             K    D + +N+    + + ++    + V   ++ + +++ L+       ++F   + 
Sbjct: 321 FTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEEKLHYLLDCLK-KTTPPVVIFSEHQN 379

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    + L     +VV L G   Q++R+ AL+   +G+  V +ATDVAA+G+D PD++ 
Sbjct: 380 DVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVATDVAAKGLDFPDIKH 439

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKG 342
           VI+ ++  + E+ +HR GRTGR G+ G
Sbjct: 440 VINYDMPKDIESYIHRIGRTGRQGKTG 466


>gi|323449738|gb|EGB05624.1| hypothetical protein AURANDRAFT_2696 [Aureococcus anophagefferens]
          Length = 395

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 169/340 (49%), Gaps = 17/340 (5%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELEW 96
           DV+  A+TGSGKT+ F +     L   N    P   +AP  L +APTRELA Q+  E   
Sbjct: 1   DVIGVAKTGSGKTLGFLVPAFKQLCGNNPGPMPGQPNAPRVLVLAPTRELATQIAEECVK 60

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
                G+    C GG     +   L++GAH+V+ TPGRL D + G  +++ ++  +V DE
Sbjct: 61  FGGPLGIRSICCYGGSPKGPQLGALRSGAHVVIATPGRLNDFLEGGMVSMHNVNYLVFDE 120

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA----ITTLAKNYQKDAVRVNIASE 212
           AD MLD+GF   I  I+   P  R+ L F+AT        +  LA  +  + V + +   
Sbjct: 121 ADRMLDMGFEPQIRKIVARCPGDRQTLFFTATCCATWPKEVRRLASEFLAEPVIIYVGDT 180

Query: 213 N---RQHSDIDYRAVLV-ALSDRDNAIVNILRYH------GAKNAIVFCSTRASVSRFTK 262
               R + D+  +  +     ++D  + + +R        G    IVF + +    +  +
Sbjct: 181 TGALRVNKDVCQKIFVTRGPQEKDRYLADCIRKETQAAAGGVARVIVFANAKRMCDQLER 240

Query: 263 VLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            L   +  +  A+ G+  Q +R+  L   + G   V IATDVAARG+D+ +++ V+  + 
Sbjct: 241 TLPRAVGVRCAAIHGDKDQMQRTQTLNAFKVGICPVLIATDVAARGLDIKEVKAVVCYDF 300

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +N E+ +HR GRTGRAG KG +     Q   R+A +L +
Sbjct: 301 PNNVEDYVHRIGRTGRAGAKGNAYTFFTQRDDRKAAQLVK 340


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|159474678|ref|XP_001695452.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158275935|gb|EDP01710.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 581

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 120/367 (32%), Positives = 186/367 (50%), Gaps = 38/367 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  G+   T VQEA +      KDV V AQTGSGKT+AF L +   L   +D     
Sbjct: 21  DVLTSLGFHTTTPVQEATIPLFCGHKDVAVDAQTGSGKTLAFVLPVVERLRRLDD----- 75

Query: 73  SAPL------ALAIAPTRELAVQV-GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NG 124
             PL      A+ I+PTRELA Q+ G    ++ +  G+   + +GG    ++    +  G
Sbjct: 76  --PLKLHQVGAIIISPTRELAKQIYGVAEPFIASVRGLTSMLLVGGTDPAQDVSAFKARG 133

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAV-VLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            H++VGTPGR+ D  RG  G  + +  AV VLDEAD +LD+GF+  ++ ++   PK+RR 
Sbjct: 134 GHVLVGTPGRIEDMGRGVGGCGMRNGVAVLVLDEADRLLDMGFKAQLDAVMGRLPKQRRT 193

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNI--------------ASENRQHSDIDYRAVLVAL 228
            +FSAT + A+  LA+   ++ VRV                    +  + +  + VL   
Sbjct: 194 GLFSATQTEAVQELARAGLRNPVRVEAAAAAEAAAADAAAAGGSQKTPNSLSIQYVLCEA 253

Query: 229 SDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVL------AEHLFQVVALSGELSQQ 281
            ++   +V  LR HG ++  IV+  T A+V     VL      A    ++ AL G + Q 
Sbjct: 254 DEKIPQLVRFLRLHGPSRKVIVYAMTCAAVDHLAAVLPRLPQLATAGVRLRALHGRMKQA 313

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L+  R   A V + TD+AARG+D+PD+  ++  +   +P   +HR GRT R GR 
Sbjct: 314 AREATLEAFRALPAGVLLCTDLAARGLDIPDVHWILQLDPPQDPAAFVHRVGRTARMGRS 373

Query: 342 GMSVFVI 348
           G ++  +
Sbjct: 374 GQALVYL 380


>gi|322815571|gb|EFZ24206.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 608

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 196/367 (53%), Gaps = 10/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++    ++  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +     
Sbjct: 122 PHIVTALENDFKFGELTGIQGRCVPAALSGRDLLAEAKTGSGKTLAFLIPIVEII--SRA 179

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F P +   A+ I PTREL +Q+ G  L+ L    G +    CIGG S ++E   L NG 
Sbjct: 180 GFRPKNGTAAVIIGPTRELCLQIEGVLLKLLKHFNGSITFLCCIGGQSRNQEAFKLVNGM 239

Query: 126 HIVVGTPGRLCDHIRGKGLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ +PGRL DH++     ++ +L  + +DEAD +LD GF +D+  I+   PKKR+  +
Sbjct: 240 MIVIASPGRLLDHLKLTADWLTKNLLVLAVDEADRVLDNGFEEDMREIVSLLPKKRQTFL 299

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ +  + +++     + +   ++   V+     R   + + ++ 
Sbjct: 300 FSATQTTRVEQLARISFYRPPLLISMKRREEKATVDTLEQGYVMCPSEQRLLVLYHFVKR 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V   T
Sbjct: 360 NLKKKMIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLFTT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +   + L+
Sbjct: 420 DVAARGLDIPHVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-KLFLKYLY 478

Query: 361 REANVSV 367
            +A+V+V
Sbjct: 479 DDAHVTV 485


>gi|315055381|ref|XP_003177065.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
 gi|311338911|gb|EFQ98113.1| ATP-dependent RNA helicase DBP8 [Arthroderma gypseum CBS 118893]
          Length = 528

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/344 (32%), Positives = 184/344 (53%), Gaps = 24/344 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q++ +   ++ +D +  ++TGSGKTVAF   +     A  D F       A+ + PT
Sbjct: 123 TAIQKSCIPEIIKGRDCIGGSRTGSGKTVAFAAPILHKWSA--DPF----GIYAVILTPT 176

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+  G
Sbjct: 177 RELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKSSG 236

Query: 144 ----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK--RRMLMFSATISPAIT 194
               + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P + 
Sbjct: 237 EDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALPASTDRQTLLFTATVTPEVR 296

Query: 195 TL-----AKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG--AKN 246
            L     AKN     V   I++EN        +  L V L+ R+  +  +L   G  +K+
Sbjct: 297 ALKSMPRAKNRPPIFV-TEISTENTTIPPTLKQTYLQVPLNHREAFLHVLLSTEGNSSKS 355

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAAR
Sbjct: 356 TIIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERIANLSRFRASAARLLVATDVAAR 415

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 416 GLDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 459


>gi|299749479|ref|XP_002911384.1| RNA helicase [Coprinopsis cinerea okayama7#130]
 gi|298408458|gb|EFI27890.1| RNA helicase [Coprinopsis cinerea okayama7#130]
          Length = 425

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 4/305 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   +  +G+   T +Q       L  +DV+  AQTGSGKT++F L  A   +   
Sbjct: 115 FPEYLMSTIRAQGFDAPTPIQCQAWPMALSGRDVVAIAQTGSGKTISFALP-AMLHINAQ 173

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+AL +APTRELAVQ+ +E       + +      GG     + RDLQ G  
Sbjct: 174 PLLAPGDGPIALVLAPTRELAVQIQQECSKFGGNSRIRNTAIYGGAPKGPQIRDLQRGVE 233

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 234 IVIATPGRLIDMLETHKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 293

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++ +D ++VNI S E   + +I     + +  ++ N ++  L    A+
Sbjct: 294 ATWPKDVQKLANDFLRDTIQVNIGSMELTANPNIQQIIEVCSDFEKRNKLIKHLDEISAQ 353

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           NA  ++F +T+      TK L +  +  +A+ G+  Q+ER   L   + GR+ + IATDV
Sbjct: 354 NAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 413

Query: 304 AARGI 308
           A+RG+
Sbjct: 414 ASRGL 418


>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 398

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 177/341 (51%), Gaps = 2/341 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A+   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L   + +  
Sbjct: 12  LTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLEKL--RHGQTQ 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL + PTRELA+QV  +++       +      GGV    +++ L  G  I+V 
Sbjct: 70  KKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQALIEGLDILVA 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FSAT+S
Sbjct: 130 TPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFSATLS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  LAK+   +   ++IA++    S+I+   + V    +   + ++++ +     ++F
Sbjct: 190 NKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQTLIF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAARGID+
Sbjct: 250 IETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAARGIDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++
Sbjct: 310 EALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKD 350


>gi|313124261|ref|YP_004034520.1| ATP-dependent helicase (dead/deah box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280824|gb|ADQ61543.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 453

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  E+ R+ 
Sbjct: 14  IRQGLAKIGFAKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAI-DEDARYV 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNGAHI 127
            A     +  AP+RELA Q+ R    L   +G+ +A+        R+R   R  QN   +
Sbjct: 73  QA-----IVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNKPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQFVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+    E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVSLVINYEIPKELEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|329769825|ref|ZP_08261226.1| hypothetical protein HMPREF0433_00990 [Gemella sanguinis M325]
 gi|328838187|gb|EGF87805.1| hypothetical protein HMPREF0433_00990 [Gemella sanguinis M325]
          Length = 443

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 182/336 (54%), Gaps = 10/336 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+ + G+ N T +QE + +P L+ K+++  +QTGSGK+ +F L + S L     +
Sbjct: 13  EFVNNAIVDLGFSNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIFSKLDLSKKK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   ++ +APTREL+ Q+      +  +++  + + +CIGG  ++R+   + N  H
Sbjct: 73  TQ------SIILAPTRELSRQLYDMALQIAEFSEEDIKITLCIGGQDLNRDIERVSNAPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTP R+ +  R   L+I  ++++V+DE D M+DLGF +D++ I   + +  + L+FS
Sbjct: 127 LIIGTPTRVLELDRASALSIKEVESLVIDECDMMIDLGFMEDVDKISKRAAENCQFLVFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   ++   K Y K+A  + I  +N +   I+Y  +    S R   +  I        
Sbjct: 187 ATIPTQMSHFLKKYLKNAQYIEI--DNAKFGKIEYILIPEKSSTRLEKLYEITTVINPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F + +  V   ++ L      V  L G+L+ +ER    + + +      +A+D+ +R
Sbjct: 245 ALIFANKKTEVEEISRYLISQGLNVGVLHGDLTPRERKQMQRRINNLDFTYVVASDLMSR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GID+  +  VI+  + ++ +  +HR+GRTGRAG  G
Sbjct: 305 GIDIEGVSHVINFNIPNDLDFFVHRAGRTGRAGLSG 340


>gi|60594465|pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
          Length = 390

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 184/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 21  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 73

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 74  GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDEAD+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 134 TPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 194 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 253 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 313 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 357


>gi|257898623|ref|ZP_05678276.1| helicase [Enterococcus faecium Com15]
 gi|257836535|gb|EEV61609.1| helicase [Enterococcus faecium Com15]
          Length = 449

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + A+ +   
Sbjct: 13  INEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINADKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|114608129|ref|XP_518584.2| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Pan
           troglodytes]
          Length = 648

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQKNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M +AT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTTATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      V +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|298387706|ref|ZP_06997257.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_14]
 gi|298259562|gb|EFI02435.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_14]
          Length = 444

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/344 (30%), Positives = 175/344 (50%), Gaps = 15/344 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL      +L  +QEA L      KDV++ + TGSGKT+A+ L L   L   +D 
Sbjct: 6   EIIQSALQNLKIESLNPMQEAALEQGTGRKDVILLSPTGSGKTLAYLLPLLLILKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
                    L + P+RELA+Q+      +   T      C GG  +  E++ +  N   I
Sbjct: 66  VQ------VLILVPSRELALQIDTVFRSM--GTSWKTCCCYGGHPIAEEKKSIAGNRPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+  +  +   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKRNFDPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           T +   P  T L +  + D +     +   Q + +    VL    D+   + N+L   G+
Sbjct: 178 TDAEEIPQFTGLNRTVKLDFLP---EATEEQENRLKLMKVLSPSKDKIATLYNLLCTLGS 234

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            ++IVFC+ R +V R  K+L +         G + Q +R  AL   R+G   V I+TD+A
Sbjct: 235 SSSIVFCNHRDAVDRVHKLLEDKKLSAERFHGGMEQPDRERALYKFRNGSCHVLISTDLA 294

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+P++E +IH  L  N E   HR+GRT R    G S  ++
Sbjct: 295 ARGLDIPEIEHIIHYHLPVNEEAFTHRNGRTARWDATGTSYLIL 338


>gi|281354492|gb|EFB30076.1| hypothetical protein PANDA_013740 [Ailuropoda melanoleuca]
          Length = 706

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 189/395 (47%), Gaps = 54/395 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +      +TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 111 PHLISTINTVLNMTRMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKS 170

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 171 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGERRKSEKARLRKGIN 230

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++   ++ ++LDEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 231 ILISTPGRLVDHIKSTKNIHFRRIQWLILDEADRILDLGFEKDITVILNAINAECQKRQN 290

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----LVALSDRDN---- 233
           ++ SAT++  +T LA     + VR+++  ++   SD   R V     L A  + D+    
Sbjct: 291 VLLSATLTEGVTRLADISLLNPVRISVLDQHHGQSDPKGREVPEASPLSAAGEPDSFAIP 350

Query: 234 ---------------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
                                 I+   ++   +  IVF S+   V     +  + L    
Sbjct: 351 ESLDQHVTLVPSKLRLVSLAAFILQQCKFEKDQKMIVFFSSCELVEFHYHLFVQTLLGRS 410

Query: 269 ---------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
                           + + L G + Q+ER+   Q     +  V + TDVAARG+DLP +
Sbjct: 411 GAPASGQLLPSAATRLKFLRLHGNMEQEERTAVFQEFSHSKTGVLLCTDVAARGLDLPQV 470

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++     S+P   +HR GRT R G +G S+ ++
Sbjct: 471 TWIVQYNAPSSPAEYIHRIGRTARIGCRGSSLLIL 505


>gi|221132610|ref|XP_002156165.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 620

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/340 (31%), Positives = 185/340 (54%), Gaps = 8/340 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T +Q   + P L  +D+L +A+TGSGKT+AF +     L   N  F P +   A+
Sbjct: 150 GFTQMTEIQYKTVMPLLNGRDLLGAAKTGSGKTLAFLIPTIELLYKLN--FMPRNGTGAI 207

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTREL++Q    L  L         + +GG +  +E   LQ G +I+V TPGRL DH
Sbjct: 208 IISPTRELSLQTFGVLRDLLQHHQQTFGIVMGGANRKQEAERLQRGVNILVATPGRLLDH 267

Query: 139 IRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           ++   G    +L+ +++DEAD +L++GF ++++ I+   PKKR+ L+FSAT +  +  LA
Sbjct: 268 LQNTPGFVFKNLQCLIIDEADRILEIGFEEEMKQIIKILPKKRQTLLFSATQTRKVEDLA 327

Query: 198 KNYQKDA---VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +   K A   V V+   E      ++   ++V    R   +   L+ +  K  +VF S+ 
Sbjct: 328 RVSLKKAPLYVGVDDDKEVSTVEGLEQGYIVVPSEKRFLLLFTFLKKNMKKKVMVFFSSC 387

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            SV   +++L      V+ + G+  QQ+R++         + + + TDVAARG+D+P+++
Sbjct: 388 HSVKFHSELLNYIDIPVMDIHGKQKQQKRTSTFFEFCTAESGILLCTDVAARGLDIPEVD 447

Query: 315 LVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
            ++  +   +P+  +HR GRT R   GR    +F++P+ +
Sbjct: 448 WIVQYDPPDDPKEYIHRVGRTARGSQGRGHALLFLLPEEL 487


>gi|317476039|ref|ZP_07935291.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907677|gb|EFV29379.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 448

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 180/364 (49%), Gaps = 23/364 (6%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
            LT +QEA  +     KD+++ + TGSGKT+AF L L  +L A+           A+ + 
Sbjct: 14  QLTPMQEAARDAYQSNKDLVLLSPTGSGKTLAFLLPLVQSLKAD------VQGVQAVVLV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDH 138
           P+RELA+Q+    E ++    V      C GG     E R ++     +++GTPGR+ DH
Sbjct: 68  PSRELALQI----ETVFKSMNVPFKSMSCYGGRPAMEEHRTMRGINPAVIIGTPGRMNDH 123

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA- 197
           +R +   +  +  +V+DE D+ L+ GF D++  ++   P  ++ ++ SAT +  I   A 
Sbjct: 124 LRKRNFEVHSVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALQKRVLLSATDAEEIPQFAG 183

Query: 198 --------KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
                          +R+N  SE    + +D + V+    D+   +  +L   G ++ +V
Sbjct: 184 VGGAVSGSDAPSSQVIRLNFLSEEAVSNRLDLQKVISPEKDKLETLYRLLCTLGDRSTLV 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F + R SV R    L    F   A  G + Q++R  AL   R+G   V ++TD+AARG+D
Sbjct: 244 FVNYRESVERVAAYLKSKKFPCDAFHGGMEQEDRERALYKFRNGSCPVLVSTDLAARGLD 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P ++ V+H  +  N E   HR+GRT R   +G S F++    +R  + L  E  V  + 
Sbjct: 304 IPGIDNVVHYHMPVNEEAFTHRNGRTARWEARGSS-FLLLHAEERLPDYLPEEIPVFGLP 362

Query: 370 EPAP 373
           E  P
Sbjct: 363 EQTP 366


>gi|257887499|ref|ZP_05667152.1| helicase [Enterococcus faecium 1,141,733]
 gi|293570504|ref|ZP_06681559.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
 gi|257823553|gb|EEV50485.1| helicase [Enterococcus faecium 1,141,733]
 gi|291609450|gb|EFF38717.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
          Length = 449

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + A+ +   
Sbjct: 13  INEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINADKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|229543833|ref|ZP_04432892.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229324972|gb|EEN90648.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 436

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 181/341 (53%), Gaps = 11/341 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+  +G+   T +Q  ++   LR +  +  +QTG+GKT A+ L L         +  
Sbjct: 15  IEKAIEHKGFAEPTEIQRKMIPLVLRGESAIGQSQTGTGKTHAYVLPLLQ-------KAD 67

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWL--YAKTGVVVA-VCIGGVSVHRERRDLQNGAH 126
           P+ A + A+  APTRELA Q+  E++ +  + +TG + A + IGG    R+   L+    
Sbjct: 68  PSLAEVQAVITAPTRELAAQIYHEIQEILKWEETGRLTAKLFIGGTDKQRDISKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D ++ + L +   K  V+DEAD MLD+GF  D++ I     +K +ML+FS
Sbjct: 128 IVVGTPGRVNDLVKEQALFVHTAKTFVVDEADIMLDMGFIVDVDQIAGRMSEKLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++     +A        I++  +     ++ + + ++L       
Sbjct: 188 ATIPEKLKPFLKKYMENPKFEQVAPRQIAAKKIEHILIPKRAREKMDVLHDVLEAFNPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+A V      L+    +   + G+LS +ER+  ++ +++   R  IATD+AAR
Sbjct: 248 AIVFANTKAMVDEIAAGLSAKGMKTARIHGDLSPRERAKTMKQIKNLEYRYIIATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           GID+  +  V++ EL  +    +HR+GRT RA   G+   +
Sbjct: 308 GIDIEGVSHVVNYELPKDLTFYVHRAGRTARADLSGICATI 348


>gi|207343942|gb|EDZ71243.1| YJL033Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 675

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|290462501|gb|ADD24298.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
 gi|290562772|gb|ADD38781.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
          Length = 426

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 186/343 (54%), Gaps = 13/343 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   + 
Sbjct: 53  PEIL-RAIGDCGFEHPSEVQHECIPQAVLGMDILSQAKSGMGKTAVFVLATLQQMEPVDG 111

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQ-NG 124
           + S       L +  TRELA Q+ +E E  ++K   G+ V V  GG+++ ++ + L+ N 
Sbjct: 112 QVS------VLVMCHTRELAFQISKEYER-FSKYLPGIKVGVFFGGLAISKDEQVLKSNC 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   +R K LN+ H K  +LDE D+ML+ L  R D++ I  ++P +++++
Sbjct: 165 PHIVVGTPGRILALVRSKKLNLKHTKHFILDECDKMLEQLDMRRDVQEIFRNTPHEKQVM 224

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  +  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 225 MFSATLSKEVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEKNRKLFELLDVL 284

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  +A+   +SQ+ER +  Q  +D + R+ +AT+
Sbjct: 285 EFNQVVIFVKSVQRCVALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFKDFQKRILVATN 344

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 345 LFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAI 387


>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
 gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
          Length = 790

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 190/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 164 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVERLLYR 223

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 224 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 281

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 282 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 341

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 342 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 399

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 400 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 459

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 460 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 519

Query: 360 FREANVSV 367
            + A  SV
Sbjct: 520 IKNAESSV 527


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 178/345 (51%), Gaps = 7/345 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +S + Y   T +Q ++    +   D++  AQTGSGKT+A+   L   +  E+
Sbjct: 78  FPNQLNKRISLKAYNRPTPIQASVFPIIMSGHDLIGIAQTGSGKTIAY--LLPGLVHIES 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+ L + PTRELA+Q+   + +      +  A   GG     +   L     
Sbjct: 136 QR--KKGGPMMLILVPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALARDPD 193

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  +  N+ ++  +VLDEAD MLD+GF   +  I     + R+ + FS
Sbjct: 194 IVVATPGRLIDFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQTVFFS 253

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  LA +    + + + I S+    + +I    + +  +++   ++ IL     
Sbjct: 254 ATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILEELSN 313

Query: 245 KNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           K+ + +F  T+         L+EH F  ++L G+ +QQ+R   ++  +  + ++  ATDV
Sbjct: 314 KDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDV 373

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           A+RG+D+ D+ LVI+ +  +  +N +HR GRTGRAG KG S+ +I
Sbjct: 374 ASRGLDVRDISLVINYDFPNQIDNYVHRIGRTGRAGDKGRSITMI 418


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T++Q   +   +  +DV+  A+TGSGKT+AF L +   ++ + +       P+A+ 
Sbjct: 333 YTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIMDQPE-LEELDGPIAVI 391

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q  +E         + VA   GGV +  +  DL+ GA ++V T GRL D +
Sbjct: 392 MSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLKRGAEVIVCTVGRLTDML 451

Query: 140 ---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
              +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT    +  L
Sbjct: 452 AANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSATFPRQMEAL 511

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRA 255
           A+      V + +  ++    D+    V++    +   ++ +L  Y    N +VF   + 
Sbjct: 512 ARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGNVLVFVDKQE 571

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L    +    L G + Q +R + +   +  + ++ +AT VAARG+D+  L L
Sbjct: 572 KADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAARGLDVKKLIL 631

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           V++ +  ++ E+ +HR GRTGRAG KG +  F++P   +R A  + R A  +   EP   
Sbjct: 632 VVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQERMAGEVCR-AFETASKEPPEQ 690

Query: 375 VEAIRE 380
           ++ I E
Sbjct: 691 LKKIWE 696


>gi|296810762|ref|XP_002845719.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
 gi|238843107|gb|EEQ32769.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Arthroderma
           otae CBS 113480]
          Length = 801

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 181/374 (48%), Gaps = 45/374 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           N+P+ + + +   GY   + +Q   +   L+ +D++  A TGSGKT AF L L   +  L
Sbjct: 378 NLPKRLLDIIDSVGYKEPSPIQRVAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISSL 437

Query: 64  AENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              D F       P A+ +APTRELA Q+  E     A     V   +GG S+  +  +L
Sbjct: 438 PRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYNL 497

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           +NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P    
Sbjct: 498 RNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSNE 557

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +M++AT+  A+  +A+ Y +    V I +     
Sbjct: 558 KPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEAV 617

Query: 217 SDIDYRAVLVALSD-RDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVAL 274
             ++ R   VA  D R   + +IL     +   IVF + + +     + +    F  V L
Sbjct: 618 DTVEQRVEFVAGEDKRKKRLADILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVTL 677

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q++R  AL  +R+G   V +ATD+A RGID+PD              +  HR GR
Sbjct: 678 HGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPD--------------SYTHRIGR 723

Query: 335 TGRAGRKGMSVFVI 348
           TGRAG+ G+++  +
Sbjct: 724 TGRAGKSGVAITFL 737


>gi|327307374|ref|XP_003238378.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
 gi|326458634|gb|EGD84087.1| ATP-dependent RNA helicase DBP8 [Trichophyton rubrum CBS 118892]
          Length = 528

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 184/343 (53%), Gaps = 22/343 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q++ +   ++ +D +  ++TGSGKTVAF   +        D F       A+ + PT
Sbjct: 123 TAIQKSCIPEIMKGRDCIGGSRTGSGKTVAFAAPILHKW--SEDPF----GVYAVILTPT 176

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +++ + A   +   +  GG  +  +   L    HIV+ TPGRL DHI+  G
Sbjct: 177 RELALQIFEQVKAISAPQSLKPLLITGGSDMRPQAIGLSQRPHIVIATPGRLADHIKSSG 236

Query: 144 ----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK--RRMLMFSATISP--- 191
               + +  ++ VVLDEAD +L  G      D+E  L + P    R+ L+F+AT++P   
Sbjct: 237 EDTIIGLKRVRMVVLDEADRLLTSGPGSMLPDVETCLSALPPSSDRQTLLFTATVTPEVR 296

Query: 192 AITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG---AKNA 247
           A+ ++ +   K  + V+ I++EN        +  L    +   A +++L   G   +K+ 
Sbjct: 297 ALKSMPRAKNKLPIFVSEISTENTTIPPTLKQTYLQVPLNHREAFLHVLLSTGGNSSKST 356

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+FC+   +     ++L     +V +L   L Q ER   L   R   AR+ +ATDVAARG
Sbjct: 357 IIFCNRTKTADLLERILRRLSHRVTSLHSLLPQSERVANLSRFRASAARLLVATDVAARG 416

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D+P + LVI+ ++  NP++ +HR GRT RAGR+G ++ ++ Q
Sbjct: 417 LDIPSVGLVINYDVPRNPDDYIHRVGRTARAGREGEAITLVGQ 459


>gi|270001921|gb|EEZ98368.1| hypothetical protein TcasGA2_TC000825 [Tribolium castaneum]
          Length = 629

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 187/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+  LT +Q   + P L  +D++ +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 143 KAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAF--LIPAVELIYKLKFMPR 200

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L         + +GG S   E + L  G +I+V TP
Sbjct: 201 NGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEAQKLSKGINILVATP 260

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        +L+ +V+DEAD +LD+GF ++++ I++  PK+R+ ++FSAT + 
Sbjct: 261 GRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLPKRRQTMLFSATQTK 320

Query: 192 ---AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              A+T+LA   +   V V+ A      + ++   V+     R   +   L+ +  K  +
Sbjct: 321 KTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLVLFTFLKKNRKKKVM 380

Query: 249 VFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           VF S+  SV +F   L  ++   V+ + G+  Q +R+       +  + + + TDVAARG
Sbjct: 381 VFFSSCMSV-KFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESGILLCTDVAARG 439

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           +D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 440 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 481


>gi|159113843|ref|XP_001707147.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
 gi|157435250|gb|EDO79473.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
          Length = 547

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 193/378 (51%), Gaps = 17/378 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+   G+ N+T +QEA +   L  +++   A TGSGK++AF L     +   N +    
Sbjct: 42  EAVDAMGHKNMTRIQEASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDLIHKANMKLHHG 101

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + + PTRELA+Q+      L + T + V + IGG S  +E   L  GA +V+ TP
Sbjct: 102 TG--VIVLTPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCKGASVVIATP 159

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATI 189
           GRLCDH+    G     L  ++LDEAD +L+ GF+ ++E IL     PK R++  FSAT+
Sbjct: 160 GRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLRQVCFFSATM 219

Query: 190 SPAITTLAKNY--QKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           S     +      ++  +R+N     ++  R H +  Y  ++     R   +   ++   
Sbjct: 220 SDKCLEVPHMEVDKETLIRINTDVKSSAATRAHFEQGY--IICPPEQRFLLLYTFMKRRS 277

Query: 244 AKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K  IVF S+R SV  + + L    +  ++ L G + Q++R        + ++ V +AT+
Sbjct: 278 DKKIIVFLSSRDSVEFYYEFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQSGVLLATN 337

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRRAERLF 360
           VAARG+DLP ++ VI  +   + E+ +HR+GR   G  G+KG+ +  +  + + +     
Sbjct: 338 VAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTGKKGVGLLFL-MSHETKFISFL 396

Query: 361 REANVSVVWEPAPSVEAI 378
           +  NVS+     P+ + I
Sbjct: 397 KAHNVSLFEFEFPADKII 414


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/353 (33%), Positives = 181/353 (51%), Gaps = 22/353 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + L ERG    T  Q       L  +D++  A+TGSGKT+A+ L  A   +  
Sbjct: 71  SFPAYVMDDLKERGLATPTPCQCQAWPIALSGRDLIAVAETGSGKTLAYVLP-AIVHVNA 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG- 124
                    P+AL +APTRELA Q+  E+    A + +  A   GGV    + + L++G 
Sbjct: 130 QPVLEKGEGPIALVLAPTRELASQIELEVAKFAASSEIKHACVTGGVPKGPQIKALKSGG 189

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           + I V TPGRL D + G   N+     VVLDEAD MLD+GF   I  I+  +   R+ L+
Sbjct: 190 SEICVATPGRLIDFLDGGQTNLRRTSFVVLDEADRMLDMGFEPQIRRIIAQTRCDRQTLL 249

Query: 185 FSATISPAITTLAKNY-QKDAVRVNI--------ASENRQ---HSDIDYRAVLVALSDRD 232
           F+AT    +  +A+ + + D V + +        AS+N +   H   D  A    L D  
Sbjct: 250 FTATWPVEVREVAREFIRNDPVEMRVGGAGDGLLASKNVEQIVHIVEDAEAKYAKLMD-- 307

Query: 233 NAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                IL      ++I VF  T+A V + T+ L    +  + L G+  Q+ER   L+  R
Sbjct: 308 -----ILEEEMDGSSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQKERDWVLEEFR 362

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             R+ + I+TDVA+RG+D+  ++LV++ +   + E  +HR GRTGRAGRKG S
Sbjct: 363 AARSPIMISTDVASRGLDVVGVKLVVNHDFPKSVEEYVHRIGRTGRAGRKGKS 415


>gi|301610484|ref|XP_002934776.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 399

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 56/345 (16%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E   + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +  TLL   
Sbjct: 26  VTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 86  QRL------YALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+        Y+ V                     
Sbjct: 200 SATMTKKVQKLQRAALKDPVKCAVSSK--------YQTV--------------------- 230

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
                               E L Q         + +R  +L   +     + +ATDVA+
Sbjct: 231 --------------------EKLQQFYVFIPSKFKNKRLGSLNKFKAKSRSILLATDVAS 270

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 271 RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQ 315


>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 783

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 178/334 (53%), Gaps = 9/334 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   +++Q   +   L+ +DV+  A+TGSGKT A+ LA    LL  + R         L 
Sbjct: 43  YKQPSTIQRRTIPAVLQGRDVVCIARTGSGKTAAY-LAPVVQLLEGHSR---TVGVRCLI 98

Query: 80  IAPTRELAVQVGRELEWLYAKT----GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           + PTRELA+QV   L+   A T     +  A  IGG SV  +   L     +VV TPGRL
Sbjct: 99  LLPTRELALQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQFGALTFNPDLVVATPGRL 158

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
             HI  K ++++ +   V+DEAD++ ++GF  D+  IL   P+KR+ ++ SAT+   +T 
Sbjct: 159 SQHIAEKSIDLTLVTHFVIDEADKLFEMGFMPDVYRILSRLPEKRQTMLVSATLPSELTE 218

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTR 254
                 ++ V   +  + + +  ++ R +     D+   +  +LR  +  +  IVF ST+
Sbjct: 219 FVNFGLRNPVIAQVDKDMQINEQLELRFIYSRTEDKVATLCRLLRNSNDTERTIVFVSTK 278

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V  F  +LA     V A+ G +    RS+ + + +  + RV + TD+AARG+DLP ++
Sbjct: 279 HHVEFFRALLAATGITVSAVYGSMDMTARSHQMGLFKSLKTRVLVVTDLAARGLDLPLVD 338

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            VI+ +   + +  +HR GRT RAGR+G+++ ++
Sbjct: 339 CVINYDFPHSSKLFIHRVGRTARAGRQGLAISIV 372


>gi|145230033|ref|XP_001389325.1| ATP-dependent RNA helicase has1 [Aspergillus niger CBS 513.88]
 gi|143019625|sp|A2Q9T6|HAS1_ASPNC RecName: Full=ATP-dependent RNA helicase has1
 gi|134055440|emb|CAK43955.1| unnamed protein product [Aspergillus niger]
          Length = 606

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 200/373 (53%), Gaps = 17/373 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + + + G+  +T +Q+  + P L  +DVL +A+TGSGKT++F +     L A 
Sbjct: 131 NLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSAL 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             RF P +    L ++PTRELA+Q   V REL   +++T     + IGG +   E   L 
Sbjct: 191 --RFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQT---YGIVIGGANRRAEAEKLT 245

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKR 180
            G ++++ TPGRL DH++   G    +LK +V+DEAD +L++GF D++  I+   P ++R
Sbjct: 246 KGVNLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEER 305

Query: 181 RMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIV 236
           + ++FSAT +  +  LA+ + +   + +N+    ++HS ++      V+     R   + 
Sbjct: 306 QTMLFSATQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLF 364

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 365 SFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQG 424

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
             I TDVAARG+D+P ++ +I  +   +  + +HR GRT R    KG S+  + Q  +  
Sbjct: 425 TLICTDVAARGLDIPAVDWIIQFDPPDDTRDYVHRVGRTARGVNGKGRSLMFL-QPSEVG 483

Query: 356 AERLFREANVSVV 368
             +  +EA V VV
Sbjct: 484 FLKHLKEARVPVV 496


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +  +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     + +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
 gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 419

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 176/338 (52%), Gaps = 4/338 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L   G++  T++Q+  +   L  KD+L  A TG+GKT +F L     LL    R+S  
Sbjct: 27  ESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPALQHLLDFPRRYSGQ 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L +APTRELA QV R    L    G+ +A+  GGV    + + L+    I+V TP
Sbjct: 87  AR--VLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQALKENIDILVATP 144

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-P 191
           GRL +++  +  +   ++ +VLDEAD MLD+GF   ++ I   + +++  ++FSAT+   
Sbjct: 145 GRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKHNMLFSATLEGG 204

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVF 250
            ++  A+    + V +       + + I     L    +   A++ +IL+      AIVF
Sbjct: 205 GVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDILKREEVSRAIVF 264

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR  V+     L +       + G++ Q+ R  AL     G   V +ATDVAARGID+
Sbjct: 265 VKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVLLATDVAARGIDI 324

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  VI+ ++  + +  +HR GRTGRAG KG ++ ++
Sbjct: 325 DGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLV 362


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 169/335 (50%), Gaps = 4/335 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 271 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKE-LQPGDGPIAVI 329

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 330 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 389

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 390 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARD 449

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIVFCSTRASV 257
              D +RV        + DI     ++         +   ++ +    + ++F + +A+ 
Sbjct: 450 ILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTSTGSVLIFVTKKANA 509

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ VI
Sbjct: 510 EELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVI 569

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           + +++ + +   HR GRTGRAG KG++   + P++
Sbjct: 570 NYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 604


>gi|167522064|ref|XP_001745370.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776328|gb|EDQ89948.1| predicted protein [Monosiga brevicollis MX1]
          Length = 498

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 187/363 (51%), Gaps = 6/363 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L +  Y N T +Q   +   +  +D+L  A+TG GKT+AF L L   ++ +       ++
Sbjct: 75  LKQLKYENPTPIQAQAIPVVMSGRDMLGIAKTGCGKTLAFLLPLLRHVMDQRKCAQGEAS 134

Query: 75  P--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P  + L ++PTRELA+Q+  E         + V    GG  +  +   L++ A I+V TP
Sbjct: 135 PGCIGLIMSPTRELALQIYNETRKFCKHLDLRVVCLYGGSDISDQIALLKSAAEIIVCTP 194

Query: 133 GRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D +    G+  N+     V LDEAD M D+GF   +  ILD+    R+ +MFSAT 
Sbjct: 195 GRMIDMLTVNSGRVTNLRRCTYVALDEADRMFDMGFEPQVTRILDNIRPDRQTVMFSATF 254

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAI 248
             A+  LA+      V V +   +   + I    +++   ++   ++ +L  +    + I
Sbjct: 255 PRAMEALARKILTKPVEVTVGGRSIVSNIIKQNVIVMREGEKFQKLLELLGHFFEQGSII 314

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +       + L ++ +  +AL G +SQ++R++ L+  R G  ++ +AT +AARG+
Sbjct: 315 VFVHKQEKADSVLENLIKNGYPCLALHGAVSQEDRASNLRDFRAGNVKIMVATSIAARGL 374

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAGR+G +   +  + ++ A  + R  + S  
Sbjct: 375 DVKQLCLVVNYDCPNHYEDYVHRCGRTGRAGREGTAYTFLTADDKKYAGNIIRALHASKA 434

Query: 369 WEP 371
             P
Sbjct: 435 QVP 437


>gi|159475485|ref|XP_001695849.1| hypothetical protein CHLREDRAFT_118630 [Chlamydomonas reinhardtii]
 gi|158275409|gb|EDP01186.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 710

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 179/357 (50%), Gaps = 7/357 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E L +RG+     +Q   L   +  +D +  A+TGSGKT AF L +   +  +     
Sbjct: 65  ILEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTGAFVLPMMRHI-KDQRPLE 123

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+AL IAPTREL  Q+ +E +      G+      GG  V  +  +L+ G  IV  
Sbjct: 124 QGDGPVALVIAPTRELVAQIAKEAKAFAKPLGLNALAVFGGSGVANQITELKRGVEIVAC 183

Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ +    R+ +MFSA
Sbjct: 184 TPGRMIDLLVTSNGKITNLRRVTYLVMDEADRMFDMGFEPQISRIIQNIRPDRQTVMFSA 243

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+   +D V + +   +  +  I     L    +R + ++ IL  ++    
Sbjct: 244 TFPRAVEALARKVLQDPVEIQVGGRSVVNDSITQWVELRPEKERFHRLLEILGEWYERGK 303

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F   + S     + L  + +  ++L G   Q +R + +   +     + +AT +AAR
Sbjct: 304 LLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNILVATSIAAR 363

Query: 307 GIDLPDLELVIHAELSSNPENLLHRS--GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ DL LV++ ++ ++ E+ +HR   GRTGRAG KG ++  I +  +R A  L +
Sbjct: 364 GLDVKDLVLVVNYDVPNHHEDYVHRCVVGRTGRAGAKGTAITFISEEEERYAPDLVK 420


>gi|293377452|ref|ZP_06623654.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
 gi|292643970|gb|EFF62078.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
          Length = 425

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + A+ +   
Sbjct: 13  INEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINADKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQLNRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|56963462|ref|YP_175193.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56909705|dbj|BAD64232.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 453

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 173/342 (50%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + LS  G    T +QE ++   L  KDV+  +QTG+GKT AF L +   L  E +     
Sbjct: 17  KGLSAIGVKRPTEIQERLIPAILNRKDVIGQSQTGTGKTFAFLLPIIEQLDIEQNEVQ-- 74

Query: 73  SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVV 129
               A+  APTREL  Q+  EL+ L  Y    V   + +GG    R+ + L     HIV+
Sbjct: 75  ----AVITAPTRELCAQLFDELKKLIVYYDGQVDAQLFVGGTDRKRQAQRLSTKQPHIVI 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D +    L +   K +V+DEAD+MLD+GF +D++ +     +  +ML+FSAT+
Sbjct: 131 GTPGRIADLVNTSSLLVYTAKTLVVDEADQMLDMGFLEDVDKVAGRLAEDLQMLVFSATV 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +    K Y  +   V++  E      + ++ V V   D+   +   +R      AI+
Sbjct: 191 PEKLQPFLKKYMNNPRHVHVQPEKLAAERVTHQLVPVRHRDKLTVLKETIRGLNPYLAII 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +T+      T  LA     V  L G L+ +ER   ++ + D   +  +ATD+AARGID
Sbjct: 251 FTNTKEQADEVTAALATEDILVDCLHGGLAPRERKKVMKRVEDLSIQYLVATDLAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  +  +I+     + +  +HR GRT RAG  G+++ +  Q+
Sbjct: 311 IKGVTHIINYAFPQDLDFYVHRVGRTARAGADGIALSLYEQS 352


>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 437

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 188/358 (52%), Gaps = 8/358 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL +      T +Q+  +   L+ +DV++ + TG+GKT+A+ L L   L AE       
Sbjct: 16  EALKKESITVPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLFMKLSAEKKEMQ-- 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIVVG 130
               AL + PT ELA+QV R++E L   + +       IG V++ R+   L+   HI+VG
Sbjct: 74  ----ALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQIDKLKLKPHIIVG 129

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ + ++   +K +++DEAD +LD    D+I+ I+ ++ K+R+++M SATIS
Sbjct: 130 TPGRILELIQKRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTLKERQIVMCSATIS 189

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                 A    K+ + +   ++      I++   +    D+ + +  ++R    K AI F
Sbjct: 190 KKTVERAMPLMKEPLVIESKADMGVPDAIEHLYFVSEQRDKIDVLRKLVRMINPKKAIAF 249

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +    +    + L  H  +   + G   + +R   +   ++GR ++ IA+D+AARG+D+
Sbjct: 250 FANSEDILVSEEKLRYHKLKAGGIHGSNIKSDRKKTMDDFKNGRLQLLIASDIAARGLDI 309

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            D+  + +  +     + LHR+GRTGR G+ G+++ ++ +       +  +E  + ++
Sbjct: 310 EDVTHIFNVNIPERSMDYLHRAGRTGRNGKPGVAISIVTEKEIEFIRKFEKELKIKII 367


>gi|51013687|gb|AAT93137.1| YJL033W [Saccharomyces cerevisiae]
          Length = 770

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|237709995|ref|ZP_04540476.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725340|ref|ZP_04555821.1| ATP-independent RNA helicase [Bacteroides sp. D4]
 gi|265753646|ref|ZP_06089001.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229436027|gb|EEO46104.1| ATP-independent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456088|gb|EEO61809.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235360|gb|EEZ20884.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 437

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 174/332 (52%), Gaps = 20/332 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIA 81
           L  +QEA ++     KD+++ + TGSGKT+A+ L L  +L        P  +   A+ + 
Sbjct: 14  LNPMQEASIDAWKEGKDLILLSPTGSGKTLAYLLPLVQSL-------KPGITGVQAIVLV 66

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIR 140
           P+RELA+Q+ +  + +   T      C GG     E R ++     +++GTPGR+ DH+ 
Sbjct: 67  PSRELALQIDQVFKSM--NTPFKAVSCYGGRPAMEEHRTIKGVQPSVIIGTPGRMNDHLS 124

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLA 197
            +  +   +  +++DE D+ L+ GF++++  ++   P  +R  + SAT +   P  T L 
Sbjct: 125 KQNFDADTVSILIIDEFDKCLEFGFQEEMATVIGQLPGLQRRFLLSATDAEEIPQFTGLN 184

Query: 198 KNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K      +++N  +   Q +  +    VL    D+   +  +L   G+++ +VFC+ R S
Sbjct: 185 K-----TIKLNFLNPEEQLTQRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNHRES 239

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  K L    FQ     G + Q +R  +L   R+G   V I+TD+AARG+D+P++E V
Sbjct: 240 VERVGKYLQSKKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPEIENV 299

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +H  L +N +  +HR+GRT R   +G S  ++
Sbjct: 300 VHYHLPANEDGYIHRNGRTARWEAEGNSYVIL 331


>gi|226506726|ref|NP_001141599.1| hypothetical protein LOC100273717 [Zea mays]
 gi|224032233|gb|ACN35192.1| unknown [Zea mays]
          Length = 429

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 184/338 (54%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 62  AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 114

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             +A L +  TRELA Q+  E E      T V VAV  GGV + + +  L+N   HIVVG
Sbjct: 115 GQVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVG 174

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 175 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 234

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L        
Sbjct: 235 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY-IKLSEAEKNRKLNDLLDALDFNQV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   ++Q+ER  + +  ++G  R+ +ATD+  RG
Sbjct: 294 VIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTSYKNFKEGHKRILVATDLVGRG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 354 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 391


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 186/368 (50%), Gaps = 12/368 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+     +  + Y+  T +Q       +   +++  A+TGSGKT+AF L     +  + 
Sbjct: 128 FPEYCMNEIRRQRYIEPTPIQAQSWPIVMSGNNLVGIAKTGSGKTLAFILPAIVHIRGQA 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
                   P+AL +APTRELA Q+ + +   +  +  V   CI GG    ++  DLQ G 
Sbjct: 188 P-LERGGGPIALVLAPTRELAQQI-QSVANDFGSSSSVRNTCIFGGSPRTKQASDLQRGV 245

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D ++    N+     +VLDEAD M+D+GF   I  I       R+ LM+
Sbjct: 246 EIVIATPGRLLDFLQAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQIRPDRQTLMW 305

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++  + + +NI S E   + +I     + A  ++   + ++L +   
Sbjct: 306 SATWPKEVRQLAEDFLGNYIHINIGSMELSANHNIRQYVEVCAEHEKGAKLKDLLSHIYD 365

Query: 245 KNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + A     I+F +T+  V +  + +      V ++ G+ SQ +R N L   R GRA + +
Sbjct: 366 QAAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRSGRANILV 425

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ--RRA 356
           ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S  F   +N +  R  
Sbjct: 426 ATDVAARGLDIDGIKYVINFDFPQSSEDYIHRIGRTGRNRSTGTSYAFFTRKNAKCARAL 485

Query: 357 ERLFREAN 364
             + REAN
Sbjct: 486 IEVLREAN 493


>gi|212693252|ref|ZP_03301380.1| hypothetical protein BACDOR_02763 [Bacteroides dorei DSM 17855]
 gi|212664203|gb|EEB24775.1| hypothetical protein BACDOR_02763 [Bacteroides dorei DSM 17855]
          Length = 461

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 174/332 (52%), Gaps = 20/332 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-SAPLALAIA 81
           L  +QEA ++     KD+++ + TGSGKT+A+ L L  +L        P  +   A+ + 
Sbjct: 38  LNPMQEASIDAWKEGKDLILLSPTGSGKTLAYLLPLVQSL-------KPGITGVQAIVLV 90

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHIVVGTPGRLCDHIR 140
           P+RELA+Q+ +  + +   T      C GG     E R ++     +++GTPGR+ DH+ 
Sbjct: 91  PSRELALQIDQVFKSM--NTPFKAVSCYGGRPAMEEHRTIKGVQPSVIIGTPGRMNDHLS 148

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLA 197
            +  +   +  +++DE D+ L+ GF++++  ++   P  +R  + SAT +   P  T L 
Sbjct: 149 KQNFDADTVSILIIDEFDKCLEFGFQEEMATVIGQLPGLQRRFLLSATDAEEIPQFTGLN 208

Query: 198 KNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           K      +++N  +   Q +  +    VL    D+   +  +L   G+++ +VFC+ R S
Sbjct: 209 K-----TIKLNFLNPEEQLTQRLHLYKVLSPEKDKLETLYKLLCTLGSQSTLVFCNHRES 263

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R  K L    FQ     G + Q +R  +L   R+G   V I+TD+AARG+D+P++E V
Sbjct: 264 VERVGKYLQSKKFQCGIFHGGMEQDDRERSLYKFRNGSCHVLISTDLAARGLDIPEIENV 323

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +H  L +N +  +HR+GRT R   +G S  ++
Sbjct: 324 VHYHLPANEDGYIHRNGRTARWEAEGNSYVIL 355


>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
 gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
          Length = 792

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 190/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 165 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYR 224

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 225 P--LNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 282

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 283 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 342

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 343 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 400

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 401 CRTFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 460

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 461 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 520

Query: 360 FREANVSV 367
            + A  SV
Sbjct: 521 IKNAESSV 528


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 183/355 (51%), Gaps = 5/355 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E +   G+     +Q   L   +  +D +  A+TGSGKT+A+ L +   + A+ +   
Sbjct: 341 IHELIRRCGFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAYILPMLRHINAQ-EPLK 399

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ + + PTREL  Q+G+E +      G       GG  +  +  +L+ GA IV  
Sbjct: 400 NGDGPIGMIMGPTRELVTQIGKEAKRYGKALGFNAVSVYGGSGIAAQIGELKRGAEIVAC 459

Query: 131 TPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +   G  I++L+ V   VLDEAD M D+GF   I  IL +    R+ +MFSA
Sbjct: 460 TPGRMIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILANLRPDRQTVMFSA 519

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T    +  LA+   ++ V + I  ++  +SDID    +    DR   ++ +L  +     
Sbjct: 520 TFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRVLELLGEWCERGK 579

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F +++       K L +  +  ++L G   Q +R + +   +     + +AT VAAR
Sbjct: 580 IIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDVCNILVATSVAAR 639

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ DL LVI+ +  ++ E+ +HR GRTGRAG+KG +V  I ++ ++ A  L +
Sbjct: 640 GLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEKFAPDLVK 694


>gi|227551392|ref|ZP_03981441.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257895994|ref|ZP_05675647.1| helicase [Enterococcus faecium Com12]
 gi|227179511|gb|EEI60483.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257832559|gb|EEV58980.1| helicase [Enterococcus faecium Com12]
          Length = 449

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L   + A+ +   
Sbjct: 13  INEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPLFEKINADKEEVQ 72

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNG-AHI 127
                  +  AP+RELA Q+      +  ++   + V+  +GG    R+   L +    +
Sbjct: 73  ------VVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQRQINRLHHQQPQV 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I    P+K + L+FSA
Sbjct: 127 VVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASRLPEKLQFLVFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y ++ +   I  +     DI+   +     D +  I  +L       A
Sbjct: 187 TIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMIYQLLTIGHPYLA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +T+  V      L     +V  + G+++ +ER   ++ +++   +  +ATD+AARG
Sbjct: 247 IVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEYQYVVATDLAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           ID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N
Sbjct: 307 IDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPN 350


>gi|237841945|ref|XP_002370270.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967934|gb|EEB03130.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221482742|gb|EEE21080.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221503065|gb|EEE28771.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 698

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 202/399 (50%), Gaps = 32/399 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q   L   LR K+V   A TGSGKT+ +   L   +    D      A + L + P 
Sbjct: 280 SPIQVLSLPHTLRGKNVCGLAPTGSGKTLGYCWPLLQRI-GRGD----GHAFMGLVLLPA 334

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV  +      + GV V + +GG  +  E + L    HIV+ TPGR+ DH++   
Sbjct: 335 RELAIQVLDQFRIYGVQLGVRVCLLLGGRDLVEEGKLLDQCPHIVIATPGRMSDHVQNDP 394

Query: 144 LN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---KKRRMLMFSATISPAITTL 196
           L     +S +  +VLDEAD +L   F DD++ IL   P   + R+ L+FSAT+SPA+  L
Sbjct: 395 LRMKKRLSLVDVLVLDEADRLLSDEFEDDLKTILSCVPTSSQGRQTLLFSATVSPALLAL 454

Query: 197 AKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHG---AKNAIVFC 251
            + +  DA+ +  A    Q +  ++ +  + V    +   ++ +L +     +   IVF 
Sbjct: 455 QRRFGDDAMPLVDAHPTDQPALPNLSHFYMFVPTRMQPIYLLYLLEHTSPFCSDRGIVFA 514

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            +     +    L         L   + Q++R   L+  R   +R+ I TDVA RG+DLP
Sbjct: 515 GSVRQTQQICTALEILKQSATPLHSLMEQRKRVACLEKFRSETSRLLICTDVAGRGLDLP 574

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWE 370
            +E VI+ ++    ++ +HR+GRT RAGRKG+++ FV P+++ R   R+  EA ++   +
Sbjct: 575 RVEFVINMQVPGKAQDYVHRTGRTARAGRKGVALTFVDPKSV-RAVHRI--EALINTQLQ 631

Query: 371 PAPSVEAIRERDAQRILQDP--------LFLDSIQGDEK 401
           P PS   I E+D  + L +         LFL+ I  DEK
Sbjct: 632 PLPS---INEQDVLKFLSNYSKVVQKSLLFLNEIGFDEK 667


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/404 (29%), Positives = 191/404 (47%), Gaps = 34/404 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 179 PSLKYGDGPIVLVMAPTRELAEQIRQECIKFSIESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I++     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNY-QKDAVRVNIASEN--------------RQHSDIDYRAVLVALSDR 231
           AT    + +LA++  ++  + VN+ S                 +H  I    +L+    R
Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           DN  +           IVF  T+ +    TK L       + + G+  Q ER   L   +
Sbjct: 359 DNDRI-----------IVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFK 407

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G++ + IATDVA+RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G S   +  +
Sbjct: 408 TGKSPILIATDVASRGLDIKDVKYVINFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSD 467

Query: 352 MQRRAE---RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             R A    ++ RE+   V     P +E I         ++P +
Sbjct: 468 KYRLARDLVKILRESEQPV----PPQLEKISYTAVNNPRRNPYY 507


>gi|85001021|ref|XP_955229.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65303375|emb|CAI75753.1| RNA helicase, putative [Theileria annulata]
          Length = 976

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 176/355 (49%), Gaps = 18/355 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAST 61
           +P  I + L +R Y     +Q   +   +  +DV+  A+TGSGKT+AF L     AL   
Sbjct: 375 LPDPILKILEKREYERPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPAIRHALDQP 434

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L END        + L IAPTREL +Q+  E        G+      GG  +  +   L
Sbjct: 435 SLRENDGM------IVLVIAPTRELVIQISNESSKFSRAVGLKTLAIYGGAGIGEQLNAL 488

Query: 122 QNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + GA IV+GTPGRL D +   +GK  N+  +  +VLDEAD M D+GF   I  I+ +   
Sbjct: 489 KRGAEIVIGTPGRLIDVLTLSKGKVTNLRRVTFLVLDEADRMFDMGFAPQISAIVGNIRP 548

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT    I  LAK      +++ +    +  S +D + VLV   ++    +  
Sbjct: 549 DRQTALFSATFPIMIENLAKKILAKPLQIVVGQRGKSASQVD-QHVLVLNEEKKLLKLLK 607

Query: 239 L--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           L   +H   N I+F +T+         L  + +    L G + Q +R   L   R+G+  
Sbjct: 608 LLGEWHEHGNIIIFVNTQLESEHLFNDLLAYGYDAGILHGGVDQTDREFTLNDFREGKKT 667

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           + IAT +AARGID+  + LVI+     + E+ +HR GRTGRAG  G S  F+ P+
Sbjct: 668 ILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPE 722


>gi|312221786|emb|CBY01726.1| similar to ATP-dependent rRNA helicase spb4 [Leptosphaeria
           maculans]
          Length = 636

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 127/422 (30%), Positives = 205/422 (48%), Gaps = 68/422 (16%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+V  T VQ A +   ++  DV+V A TGSGKT++F + +   LL  +    
Sbjct: 22  IIEAVDAMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLSFLIPIVERLLRSD---- 77

Query: 71  PASAPL------ALAIAPTRELAVQVGRELEWLY-------------------------- 98
              AP+      A+ I+PTRELA Q+   L  L                           
Sbjct: 78  ---APIKKHHVGAIIISPTRELATQIHTVLCSLLKFHAPSAAMLEPEDEDTDMEDADAPP 134

Query: 99  ------AKTGVVVAVCIGG--VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH-- 148
                     VV  + +GG         R L++  ++++GTPGRL + +    ++ S   
Sbjct: 135 KPLFPPGTVKVVPQLLLGGSVTPAQDLSRFLKSQTNVLIGTPGRLLELLSSPHVHCSQTS 194

Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN 208
             A+VLDEAD +LDLGF+DD++ IL   PK+RR  +FSA++S A+  L +   ++ VR+ 
Sbjct: 195 FDALVLDEADRLLDLGFKDDLQRILSRLPKQRRTGLFSASVSEAVDQLIRVGLRNPVRIA 254

Query: 209 IA------------SENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVFCSTR 254
           +              + R  + +     ++  S +  AI  IL       + +I++ +T 
Sbjct: 255 VKVKARSTGQDGAIEDKRTPASLQMSYCILPPSHKLPAIKQILSSLQPQPQKSILYLATC 314

Query: 255 ASVSRFTKVLAEHL--FQVVALSGELSQQ-ERSNALQMMRDGRARVCIATDVAARGIDLP 311
            SV  F  VL E    + +V L G+   +  R N ++ +      + + TDVAARG+D+P
Sbjct: 315 YSVDYFQHVLPEIFKGYTIVPLHGKHPDKVRRRNFIKFVESVTPSILLTTDVAARGLDIP 374

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL-FREANVSVVW 369
            ++LV+  +  S+P+  +HR GR GRAGRKG+++ F+ P   +   E L  R+  VS + 
Sbjct: 375 AVDLVLQFDPPSDPKTFIHRCGRAGRAGRKGLAITFLAPGREEDYIEFLRVRQTPVSPLT 434

Query: 370 EP 371
            P
Sbjct: 435 SP 436


>gi|308080082|ref|NP_001183327.1| hypothetical protein LOC100501728 [Zea mays]
 gi|238010798|gb|ACR36434.1| unknown [Zea mays]
          Length = 649

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 239/506 (47%), Gaps = 63/506 (12%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +P  ++  +A+ E  Y +LT +Q   +   L   DV+ +A+TGSGKT+AF +   
Sbjct: 152 KLFSELPLSELTAKAIREMNYTHLTQIQARSIPHLLEGNDVMGAAKTGSGKTLAFLIPAI 211

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHR 116
             L   +  FSP +   A+ + PTRELA+Q   V +EL   +++T   +   IGG +   
Sbjct: 212 EMLY--HTHFSPRNGTGAIVVCPTRELAIQTHNVAKELMKYHSQT---LGYVIGGNNRRS 266

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           E   L  G +++V TPGRL DH++  K      LK +V+DEAD +L+  F +D++ I   
Sbjct: 267 EADQLAKGINLLVATPGRLLDHLQNTKSFIYRRLKCLVIDEADRILEQNFEEDMKQIFKR 326

Query: 176 SPKKRRMLMFSATISPAITTLAK-------NYQKDAVRVNIASENRQHS--DIDYRAVLV 226
            P+ R+ ++FSAT +P +   AK         +K  V V +  +  + +   +     ++
Sbjct: 327 LPQNRQTVLFSATQTPEVEKFAKLSFEKNEESKKKPVYVGVDDDKSKATVEGLQQGYCVI 386

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +   R   +   LR    K  +VF S+  SV    ++L     +   + G+  QQ+R+  
Sbjct: 387 SSDKRFLVLYAFLRKKRNKKIMVFFSSCNSVKFHAELLNFLGIECSDIHGKQKQQKRTTT 446

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMS 344
                     + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R   G+    
Sbjct: 447 FFSFCKAEKGILLCTNVAARGLDIPDVDYILQYDPPDEPKDYIHRVGRTARGEKGKGSAL 506

Query: 345 VFVIPQNMQ----------RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +F++P+ ++             E  F + NV       P++++  E     I+ +  FL+
Sbjct: 507 LFLLPEELKFLIYLKAAKVTLTEYEFNQKNV-------PNLQSQLE----NIVGENYFLN 555

Query: 395 S----------IQGDEKKMVDVL-LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
                      +  D   M D+  + + D +K+AA F      G   P ++  + L S  
Sbjct: 556 QSAKEAYRSYVLAYDSHSMKDIFNVHQLDLQKVAASF------GFKNPPKVN-LDLDSSA 608

Query: 444 DRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + R   R  +V GG R     S+ +
Sbjct: 609 AKHRKKMR--RVDGGKRHGISASNPY 632


>gi|195112586|ref|XP_002000853.1| GI10456 [Drosophila mojavensis]
 gi|193917447|gb|EDW16314.1| GI10456 [Drosophila mojavensis]
          Length = 748

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 188/341 (55%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 268 AIEEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 325

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 326 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLSKGINILVATPG 385

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 386 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTER 445

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   +K+ + V +  +N++ + ++   +  +V  S+ R   +   L+ +  K  +
Sbjct: 446 IDALSKLALKKEPIYVGV-HDNQETATVEGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 504

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 505 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 564

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 565 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLML 605


>gi|160380619|sp|A6ZPU3|DBP4_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|151945052|gb|EDN63303.1| helicase CA [Saccharomyces cerevisiae YJM789]
          Length = 770

 Score =  163 bits (413), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|332829836|gb|EGK02478.1| hypothetical protein HMPREF9455_01435 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 461

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 173/336 (51%), Gaps = 19/336 (5%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+E       + Q+AI+N   ++  +L+S  TGSGKT+A+ + +   L  +       
Sbjct: 32  EALNEMQ----IAAQDAIIN---KQNTILLSP-TGSGKTLAYLMPVLRLLKGD------V 77

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
            +   L I P+RELA+Q+  E  W    T   V VC GG S+  E  +L N   I++GTP
Sbjct: 78  KSVQCLVIVPSRELALQI--EQVWKKMGTKFKVNVCYGGHSIDTELNNLSNPPAILIGTP 135

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+  K  N   +K +VLDE D+ L LGF++D+  I+   P  ++ ++ SAT    
Sbjct: 136 GRLKDHLERKSFNPGSVKTLVLDEFDKSLQLGFQNDMNAIVSQFPNLQKRVLLSATSDVE 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I    K    ++  +   ++  ++  +  + VL    D+  ++  ++    ++ A++FC+
Sbjct: 196 IPDFVK---MESPAILDYTQEEKNDTLSIKLVLSPEKDKIESLFQLICSLDSEPALIFCN 252

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R    R + +L +   Q     G + Q +R   L   R+G     + TD+AARG+D+P+
Sbjct: 253 HREVAERISDLLNKEGIQTGYYHGGMDQDDREKVLIQFRNGSLNYLVTTDLAARGLDIPE 312

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ VIH  L S     +HR+GRT R    G +  ++
Sbjct: 313 MKHVIHYHLPSKESEFVHRNGRTARMHASGTAYIIM 348


>gi|145613028|ref|XP_362776.2| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
 gi|145020089|gb|EDK04317.1| hypothetical protein MGG_08272 [Magnaporthe oryzae 70-15]
          Length = 584

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 180/358 (50%), Gaps = 60/358 (16%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q A     L  +DV+  A+TGSGKT+AF    A + LAE             
Sbjct: 205 GFTAPTPIQSASWPYSLDGRDVVGIAETGSGKTLAFSTHAAISKLAE------------- 251

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---QNGAHIVVGTPGRL 135
                      VG            + AVC+ G +   E+R L     GA I+V TPGRL
Sbjct: 252 ----------LVG------------MSAVCLFGGAPKDEQRTLLRKGKGADIIVATPGRL 289

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAI 193
            D +    +++S  + VVLDEAD MLD GF DD++ IL   P +  R+ LMF+AT   ++
Sbjct: 290 KDFLSDDTVSLSAARFVVLDEADRMLDKGFEDDVKLILGLCPDRGQRQTLMFTATWPASV 349

Query: 194 TTLAKNYQKDAVRVNIASENRQ---------------HSDIDYRAVLVALSDRDNAIVNI 238
             LA+++  + V+V I    R                +S I  R  +V   +++  +V +
Sbjct: 350 RGLAESFMVNPVKVTIGGRTRAVDGDDDGNGVVELQANSRISQRVEVVNPWEKETRLVQL 409

Query: 239 LR-YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           L+     KN     +VFC  +    R    L     +V ++ G+L Q++R+ +L+  + G
Sbjct: 410 LKEAQAGKNKNDRVLVFCLYKKEAVRVENNLQRKGIRVASIHGDLKQEQRTASLEAFKSG 469

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +  V +ATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG++G ++ +  ++
Sbjct: 470 KTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKQGQAITLFTEH 527


>gi|167533981|ref|XP_001748669.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772910|gb|EDQ86556.1| predicted protein [Monosiga brevicollis MX1]
          Length = 592

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 181/366 (49%), Gaps = 17/366 (4%)

Query: 14  ALSERGYVNLTSVQEA--ILNP-DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           A   +GY    S  +A  +  P  L  +D++  A TGSGKT+AF L      L +  +  
Sbjct: 161 AFGRQGYCQTNSNSDARFVGVPVALSGRDMIGIAFTGSGKTLAFSLPALMLALDQEIKMP 220

Query: 69  FSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
           F     P A+ +AP+RELA Q   V  E     AK G   + + +CIGG+S+       Q
Sbjct: 221 FVGGEGPFAIIMAPSRELARQTYDVLIEFTDALAKEGYPQLGIMLCIGGLSMQEVMERCQ 280

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NG HI V TPGRL D +  K + +   +   LDEAD M+D+GF DDI  I      +R+ 
Sbjct: 281 NGVHIAVCTPGRLIDVLGKKRITLDVCRYFCLDEADRMVDMGFEDDIRTIFSYFKGQRQT 340

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILRY 241
           L+FSAT+   +   A +     V VN+       S D+      V    R   ++  L+ 
Sbjct: 341 LLFSATMPTKVKDFAASALVKPVTVNVGGRAGAASLDVIQEVEYVNPDSRVVYLLECLQ- 399

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F   +  V    + L        A+ G   Q+ER  A++  ++GR  V +AT
Sbjct: 400 KTPPPVMIFSEKKQDVDDIHEYLLLKGVHAAAIHGSKDQEERDMAVKGFKEGRKDVLVAT 459

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFV---IPQNMQRRAE 357
           D+A++G+D PD++ VI+ ++    EN +HR GRTGR+G+ G+ + FV   +P       +
Sbjct: 460 DIASKGLDFPDIKHVINFDMPEELENYVHRIGRTGRSGKTGLATTFVSDMVPMTTLLDLK 519

Query: 358 RLFREA 363
            L +EA
Sbjct: 520 YLLKEA 525


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 187/372 (50%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E +    Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L L   +  + 
Sbjct: 428 LPASCIEVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRHI-KDQ 486

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQ+ ++ +      G+      GG  +  +  +L+ GA 
Sbjct: 487 RPLEQMEGPMALVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAELKKGAE 546

Query: 127 IVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ +
Sbjct: 547 IIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQTV 606

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RY 241
           +FSAT    + +LA+   +  + + +   +   ++I+    + A   + N ++ IL   Y
Sbjct: 607 LFSATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRAEDTKFNRLLEILGQMY 666

Query: 242 HGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       ++F   + +     + L    +  ++L G   Q +R + +   + G   + I
Sbjct: 667 NDDPECRTLIFVDRQEAADNLLRDLMRKGYLCMSLHGGKDQVDRDSTIADFKAGVVPIVI 726

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R +  +
Sbjct: 727 ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQERYSVDI 786

Query: 360 FREANVSVVWEP 371
           +R    S    P
Sbjct: 787 YRALKASEATIP 798


>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
 gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
          Length = 421

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 179/350 (51%), Gaps = 6/350 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  +  ++ E+L   G+   T++Q+  +   + +KD+L  A TG+GKT +F L    
Sbjct: 13  LFEDFLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQ 72

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    RFS  +    L + PTRELA Q+ R    L     + + +  GG+    +   
Sbjct: 73  HIIDFPRRFSGQAR--VLVLTPTRELASQIHRYASHLSTGLDLNIVIITGGMPYGPQEEA 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   I+V TPGRL +++     N   ++  V+DEAD MLD+GF   +E +   S  ++
Sbjct: 131 LKNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRK 190

Query: 181 RMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NI 238
           + ++FSAT+  + +   +     D V+V   +   + + I     +    +   A++ NI
Sbjct: 191 QTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       IVF  TR  V+    +L         + G++ Q++R  AL     G   V 
Sbjct: 251 LRQEDVTRTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ ++  VI+ ++  + +  +HR GRT RAG KG ++ ++
Sbjct: 311 LATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLV 360


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 180/349 (51%), Gaps = 17/349 (4%)

Query: 4   FENIPQVIGEAL----SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FENI   I E L       G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 19  FENIG--IDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVG-- 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
               A N      +    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 75  ----ALNCVNRNLNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG H++ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIV 236
            ++++ SAT+   +  +   +    V++ +  +      I  +   V++     +   + 
Sbjct: 191 TQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGI--KQFFVSIEKEQWKYETLA 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + R
Sbjct: 249 DLYESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFR 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++
Sbjct: 309 VLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAI 357


>gi|6322427|ref|NP_012501.1| Hca4p [Saccharomyces cerevisiae S288c]
 gi|1170186|sp|P20448|DBP4_YEAST RecName: Full=ATP-dependent RNA helicase HCA4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|1008155|emb|CAA89324.1| HCA4 [Saccharomyces cerevisiae]
 gi|285812868|tpg|DAA08766.1| TPA: Hca4p [Saccharomyces cerevisiae S288c]
          Length = 770

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
 gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 180/359 (50%), Gaps = 9/359 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E+G+   + +QE  +   L  +D+L  A+ G+GKT A+ + L    L   D  +  +   
Sbjct: 64  EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPL----LERTD--TTKNCIQ 117

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA+Q  +    L    G  V V  GG S+  +   L N  H++V TPGR+ 
Sbjct: 118 ALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRLYNKVHVIVATPGRVL 177

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D ++ K  ++S  + +V+DEAD++L + F+  +E I+   P+ R++L+FSAT   ++   
Sbjct: 178 DLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQILLFSATFPISVRDF 237

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + + +    +N+  E   H    Y A  V    + + +  + +      +I+FC++   
Sbjct: 238 KEKHLRKPYEINLMDELTLHGVTQYYA-FVEEKQKVHCLNTLFQKLQINQSIIFCNSVQR 296

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V    + + E  F    +   +SQ  R+      R G  R  + +D+  RGID+  + +V
Sbjct: 297 VELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVV 356

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           I+ +   N E  LHR GR+GR G  G+++ +I  + +    ++  E +  +  +P PSV
Sbjct: 357 INFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENELDTEI--KPIPSV 413


>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
          Length = 660

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 211/401 (52%), Gaps = 23/401 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++ E + ++ +   + +Q       L  +D++  AQTG+GKT+AF   L   L+
Sbjct: 256 FHEFPDILTE-IRKQNFEKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAF---LLPALI 311

Query: 64  AENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             + + +P    + P  L +APTRELA+Q+ +E+   Y+  G+  AVC+ G    + + D
Sbjct: 312 HIDGQVTPRDKRTGPNVLVMAPTRELALQIEKEVG-KYSYHGIK-AVCVYGGGNRKTQID 369

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  IV+ TPGRL D ++   L++S +  ++LDEAD MLD+GF   I   L      
Sbjct: 370 TVTKGVQIVIATPGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPN 429

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVN 237
           R+ +M SAT    +  LA++Y K+ ++V + S +    HS +  R  +    ++ + +  
Sbjct: 430 RQTVMTSATWPQGVRRLAQSYMKNPIQVFVGSLDLAAVHS-VTQRIYMANEDEKTDMMHQ 488

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +  G ++  IVF   ++ V   +  LA       ++ G+  Q +R  AL+ ++ G  +
Sbjct: 489 FFQEMGPQDKVIVFFGKKSKVDDVSSDLALTNIDCQSIHGDRDQSDREQALEDLKTGAVQ 548

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A
Sbjct: 549 ILLATDVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHA 608

Query: 357 ERL---FREANVSV---VWEPAPSVEAIRERDAQRILQDPL 391
           + L     EAN  V   +++ A   +A +++  Q   +DP 
Sbjct: 609 KALIDILEEANQEVPEEIYKMAERYDAWKKKKEQ---EDPY 646


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 169/335 (50%), Gaps = 4/335 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 226 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKE-LQPGDGPIAVI 284

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 285 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 344

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FSAT    I  LA++
Sbjct: 345 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKKIEKLARD 404

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIVFCSTRASV 257
              D +RV        + DI     ++         +   ++ +    + ++F + +A+ 
Sbjct: 405 ILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTSTGSVLIFVTKKANA 464

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ VI
Sbjct: 465 EELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVAARGLDIPSIKTVI 524

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           + +++ + +   HR GRTGRAG KG++   + P++
Sbjct: 525 NYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKD 559


>gi|85711917|ref|ZP_01042972.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694314|gb|EAQ32257.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 421

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 182/337 (54%), Gaps = 4/337 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +AL+  G+ N T +Q   L   L  +DV   AQTG+GKT+AF LA  + L+      S
Sbjct: 20  IQQALTSAGFENCTPIQALSLPVALSNQDVAGQAQTGTGKTLAFLLATFNRLMQSQK--S 77

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             + P A+ +APTRELA+Q+  + + L     +  AV  GG     +++ L +   I++G
Sbjct: 78  SEAGPRAIIMAPTRELAIQIANDAKILTQTCELKTAVIYGGEGYEAQQQQLADKPDIIIG 137

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS--SPKKRRMLMFSAT 188
           T GR+ D  +     + +++ VVLDEAD M DLGF +DI ++L +   P +R  L+FSAT
Sbjct: 138 TTGRIIDFYKQSLFPLDNIEVVVLDEADRMFDLGFINDIRYLLKAMPDPSERLNLLFSAT 197

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  +  LA  +     +V +  + +    I       +  D+   ++ ++       AI
Sbjct: 198 LSYRVQELAYEHMNAPTKVEVEPQQKTGVRISEELFYPSKYDKMPLLLTLIEEDWPDRAI 257

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +T+    +  + L  +  +V  L+G++ Q++R   L    +G   + +ATDVAARG+
Sbjct: 258 VFANTKHGCDKVHQWLEINGHRVGLLTGDVPQKKRLKILDDFAEGHLDILVATDVAARGL 317

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +P++  V + +L  + E+ +HR GRTGRAG  G +V
Sbjct: 318 HIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAV 354


>gi|296130083|ref|YP_003637333.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021898|gb|ADG75134.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 551

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/371 (33%), Positives = 175/371 (47%), Gaps = 6/371 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +P+V+  AL+ +  +    +Q A L   LR  DVL   +TGSGKT+AF L +
Sbjct: 1   MTTFSDLGVPEVLVRALAAQEIITPFPIQVATLPDTLRGADVLGRGRTGSGKTLAFALPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A   +  P     AL + PTRELA Q+      L    G+      GGV+  R+ 
Sbjct: 61  VARLAASTTQRRPRRP-RALVLCPTRELATQIDATFAPLARAAGLRTTTVFGGVAQSRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  ++V  PGRL D +R   + +  ++  VLDEAD M DLGF   +  +LD +P 
Sbjct: 120 TALDRGVDVLVACPGRLEDLLRQNLVTLDGVEITVLDEADHMADLGFLPVVRRLLDRTPT 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   + TL   Y    V  +      Q +      VL          V  
Sbjct: 180 LGQRLLFSATLDNGVGTLVDRYLTSPVE-HAVDPAAQTAVASTHHVLEVADAAAKKAVVE 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G+   ++F  T+    +  K L       V L G L Q  R   L     G ARV 
Sbjct: 239 TLAAGSGRRVLFMRTKHHAKKLAKQLTLAGIPAVDLHGNLGQGARERNLAAFSSGEARVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + ++ELV+H +  +  +  LHRSGRT RAG  G +V  I    QR   R
Sbjct: 299 VATDIAARGIHVDEVELVVHVDPPAEHKAYLHRSGRTARAGASG-TVLTIQLPEQRGDVR 357

Query: 359 -LFREANVSVV 368
            + R A + V 
Sbjct: 358 AMTRAAGIRVT 368


>gi|237721014|ref|ZP_04551495.1| ATP-independent RNA helicase [Bacteroides sp. 2_2_4]
 gi|229449849|gb|EEO55640.1| ATP-independent RNA helicase [Bacteroides sp. 2_2_4]
          Length = 444

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 19/346 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLLLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAAEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSSSSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S  ++
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTSYLIL 338


>gi|255524804|ref|ZP_05391754.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188659|ref|ZP_06857047.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|255511471|gb|EET87761.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046923|gb|EFG86369.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 382

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 192/365 (52%), Gaps = 22/365 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQ-----EAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           I + I E L + G    T +Q     +AILN     KD++  A+TGSGKT+A+   +   
Sbjct: 11  INEKITEGLKKEGIEYATEIQVEAIPQAILN-----KDIVGEAETGSGKTLAYLAPIFQN 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERR 119
           +       + + A  A  + PT ELA+QV   ++ L   + + V  A  IG +++ ++  
Sbjct: 66  I------DTNSKAVQAFILTPTHELAIQVNDVIKTLAEDSEIPVKSAAIIGNINIKKQIE 119

Query: 120 DLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L+N   HIVVG+ GR+   I+ K +    +K +V+DEAD++LD    +D++ I+ ++ K
Sbjct: 120 NLKNNKPHIVVGSTGRILQLIKLKKMKAHMIKTIVVDEADKLLDKNNVEDVKAIIKTTLK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+++ FSATI      +AK   K+   +    +   + +I++        D+   +  +
Sbjct: 180 DRQLMFFSATIDERTLDVAKTLMKEYEVIRTQGKTSMNENIEHMCFKCEQRDKILILRKV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K AIVF +    +   T+ L  H  +  ++ G   ++ R  AL+  + G+  + 
Sbjct: 240 FHILNPKKAIVFVNKPDEIEVLTEKLNYHGIKSESIYGTADKEVRKRALEDFKAGKINLL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRR 355
           +A+D+AARG+D+ D+E +   ++  + +N LHR+GRT RAG+ G S+ +     Q++ ++
Sbjct: 300 VASDIAARGLDIQDVECIFSYDIPEDTDNYLHRAGRTARAGKAGKSICIFTDREQSLIKQ 359

Query: 356 AERLF 360
            E+ F
Sbjct: 360 YEKTF 364


>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
 gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
          Length = 722

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 180/360 (50%), Gaps = 30/360 (8%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA-- 72
           +S+  Y   T +Q   +   L+ +D++  A+TGSGKT AF + L   + +       A  
Sbjct: 308 ISDLKYNEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITSLPKIVREADI 367

Query: 73  -SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P A+ +APTRELA Q+  E        G+     IGG++   +   L+ G  IV+ T
Sbjct: 368 DQGPYAIIMAPTRELAQQIEEEAARFGKPVGIRTVAVIGGLNREEQGFLLRQGCEIVIAT 427

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-------------- 177
           PGRL D +    L ++    VVLDEAD M+D+GF  D++ IL+  P              
Sbjct: 428 PGRLLDVLDNSYLVLNQCTYVVLDEADRMIDMGFEPDVQSILEYLPVSNQKPDTDDAQDP 487

Query: 178 -----------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VL 225
                      + R+ +MF+AT+ P +  LA++Y +    V I S  +    ++    ++
Sbjct: 488 NKIRLKLGDKNRYRQTVMFTATMPPPVERLARSYLRRPAVVYIGSAGKPTESVEQIVHMM 547

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              +D+   +V +L+   +   I+F + +       K L +  ++   L G  SQ +R  
Sbjct: 548 KNENDKRKKLVTLLKTLESP-IIIFVNQKKGCDVLAKSLEKIGYRSATLHGGKSQDQREL 606

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL  ++ G   + +ATDVA RGID+ D++ VI+ +++ + E+  HR GRTGRAG+ G ++
Sbjct: 607 ALNGLKSGSKDILVATDVAGRGIDIRDVQYVINYDMAKSIESYTHRIGRTGRAGKTGTAI 666


>gi|1619952|gb|AAB17005.1| putative RNA helicase [Saccharomyces cerevisiae]
          Length = 770

 Score =  163 bits (413), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +  +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q ER+  +   +     + +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|71020871|ref|XP_760666.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
 gi|74700620|sp|Q4P5U4|DBP4_USTMA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46100168|gb|EAK85401.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
          Length = 869

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 190/358 (53%), Gaps = 12/358 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +P        L   GY ++T +Q   L+  L+ KDVL +A+TGSGKT+AF + +
Sbjct: 57  LKQFTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPV 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++ P+    AL I+PTRELA+Q+   L  + +       + IGG  V +E+
Sbjct: 117 LEILYRR--KWGPSDGLGALVISPTRELAIQIFEVLRKIGSYHTFSAGLVIGGKDVKQEK 174

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            D  +  +I++ TPGRL  H+ +  G + S+++ +VLDEAD +LD+GF   +  I+++ P
Sbjct: 175 -DRLSRINILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLP 233

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNA 234
           + R+ ++FSAT +  +  LA+   +D   V +    +E      ++   +LV L  + + 
Sbjct: 234 RNRQTMLFSATQTKRVKDLARLSLQDPEYVAVREPENEGCTPRGLEQHYMLVELEKKLDL 293

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRD 292
           + + +R H    A+VF S+   V    +   +      ++AL G+  Q +R         
Sbjct: 294 LFSFIRTHTKCKALVFMSSCRQVQFVHETFCKLRPGVSLMALHGKQKQAKRLQIFTQFTK 353

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            +  +  ATD+AARG+D P ++ VI  ++  + +  +HR GRT R   KG S +FV+P
Sbjct: 354 TQHALLFATDIAARGLDFPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLP 411


>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 180/354 (50%), Gaps = 4/354 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P ++ + L        T +Q+  +   +  + V+  ++TGSGKT+A+ L + + L 
Sbjct: 59  FELLPSLL-KTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPILNYLK 117

Query: 64  AENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +  +   P    +AP A+ + P+REL  QV +  + +   T + V   +GG+S+ + RR+
Sbjct: 118 SLEESGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLEQARRN 177

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++ TPGRL   +    +++  ++ ++ DEAD+MLD GF  D   I+D  P+  
Sbjct: 178 TSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDCCPEDV 237

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSAT+S  +  L  +    A  +   +  +  S +  + + V    R      +L 
Sbjct: 238 NLALFSATVSKTVEKLMNDLFAKAEVIRSKNSGKVVSTLKTKNLTVEDGKRWPLFEKVLA 297

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF +TR    +  K L +     V   GE+ + ER   L+  RDG+  + +A
Sbjct: 298 QKVDGGTIVFANTREQCDKIAKELTDKGHACVVYRGEMDKNERRTNLKKFRDGQVGLLVA 357

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           TD+A RG+D+ ++  VI+  L    EN LHR+GRT RAGR G+ V ++ +   R
Sbjct: 358 TDLAGRGLDVSNIARVINYHLPKEMENYLHRAGRTARAGRPGLVVNLVTERDSR 411


>gi|322700977|gb|EFY92729.1| ATP-dependent RNA helicase dbp10 [Metarhizium acridum CQMa 102]
          Length = 894

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 187/371 (50%), Gaps = 40/371 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++ +G+   T +Q   +   L  KDV+  A+TGSGKT AF + +   L A + RF   
Sbjct: 96  KAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIPMIEKLRAHSGRF--- 152

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++P+RELA+Q  + ++     T +   + +GG S+  +   +     IV+ TP
Sbjct: 153 -GSRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEQFGYMAANPDIVIATP 211

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR   H++ +  L++S +K VV DEAD + ++GF   +  IL + P  R+ L+FSAT+  
Sbjct: 212 GRFL-HLKVEMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSRQTLLFSATLPA 270

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----------- 240
           ++   A+   +D   V + +E +   D++     V  ++++ A+++IL            
Sbjct: 271 SLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILHDVIKMPMGAPE 330

Query: 241 ------YHGAK-----------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
                   G+K                 + I+F +T+  V     VL    F V  + G 
Sbjct: 331 NAKQDSEKGSKKRKRGESGSGSGKPTEHSTIIFTATKHHVEYLASVLQRAGFSVSHVYGS 390

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L Q  R N ++  R G+  + + TDVAARGID+P L  VI+ +  S P+  +HR GRT R
Sbjct: 391 LDQTARRNQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFVHRVGRTAR 450

Query: 338 AGRKGMSVFVI 348
           AG++G S  ++
Sbjct: 451 AGQRGWSYSLV 461


>gi|194225966|ref|XP_001499277.2| PREDICTED: similar to helicain B [Equus caballus]
          Length = 808

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TS+Q+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 225 SMTSIQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAVKAKIQRSDGPYALVLV 284

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 285 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 344

Query: 141 GKG-LNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             G L+ S ++ ++LDEAD +LDLGF  DI  IL   ++  + R+ ++ SAT++  +T L
Sbjct: 345 STGNLHFSRVRWLILDEADRILDLGFEKDITVILNAVNAECQSRQTVLLSATLTEGVTRL 404

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----------------------- 233
           A     + V +++  E+   S+   +AVL     R +                       
Sbjct: 405 AGISLHNPVSISVLDESHDQSNPKGKAVLEVSPPRTSDELDSFAIPESLDQHVTLVPSKL 464

Query: 234 -------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL------------------ 268
                   I+   ++   +  IVF S+   V     +  + L                  
Sbjct: 465 RLVSLAAFILQKCKFEKDQKMIVFFSSCELVEFHYNLFLQTLLSSSGAPAPGQLPSASTR 524

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     +  V + TDVAARG+DLP ++ ++     S+P   
Sbjct: 525 LKFLRLHGNMEQEERTAVFQEFSHSKTGVLLCTDVAARGLDLPQVKWIVQYNAPSSPAEY 584

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 585 IHRIGRTARIGCHGSSLLIL 604


>gi|134299705|ref|YP_001113201.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052405|gb|ABO50376.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 438

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 196/356 (55%), Gaps = 12/356 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E LS++G  N T++Q+  +   L+ KD++  +QTGSGKT+A+ L +   +       S
Sbjct: 14  IAEGLSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLPIFQKI------DS 67

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNGAHIV 128
                 AL +APT EL +Q+ ++++ L +  G+ +   V IG V++ R+   L+   HI+
Sbjct: 68  SKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEVNIVRQIEKLKEKPHII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VG+ GR+ + I+ K ++   +K +V+DEAD +LD      ++ ++ ++ + R++++FSA 
Sbjct: 128 VGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTTMRDRQLMIFSAY 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++      +K   KDA  + I  E   + +I +  ++    D+   +  ++     K AI
Sbjct: 188 MNQRAMAESKELTKDAEVIIIEDEILVNPNITHLYLIAEQRDKMKVLRKLIAATKPKKAI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +    +      L  H F+V  + G+ +++ER  A++  R    ++ +A+D+AARG+
Sbjct: 248 IFVNKMEDIQTTALKLQYHNFKVSEIYGKAAKEERQKAMEGFR-SEGQLLVASDMAARGL 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           D+  +  + + +L  + +  LHR GRTGR G+ G ++ ++ +    + ++ ER F+
Sbjct: 307 DINGVTHIFNLDLPEDSKEYLHRVGRTGRKGKLGTAISIVTERETALLKKYEREFK 362


>gi|297833696|ref|XP_002884730.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297330570|gb|EFH60989.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 393

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/325 (30%), Positives = 169/325 (52%), Gaps = 11/325 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M I EN+ +     L E GY   +++Q+  + P L+ +DV+  AQ+G+GKT    L++  
Sbjct: 40  MGIKENVLR----GLYEYGYEKPSAIQQRAIMPILQGRDVIAQAQSGTGKTSMIALSVCQ 95

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +          AL ++PTRELA Q    ++ + +   V    CIGG SV  + R 
Sbjct: 96  VVDTSSREVQ------ALILSPTRELASQTEMTIQAIGSHGNVQAHACIGGKSVGEDIRK 149

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P   
Sbjct: 150 LEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDI 209

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           ++ + SAT+   I  +   +  D V++ +  +      I    + V   + +   + ++ 
Sbjct: 210 QVCLVSATLPHEILEMTTKFMTDPVKILVKRDELALEGIKNFFISVEKEEWKFETLCDLY 269

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   ++ +    F V ++ G++ Q+ER   +   R G +RV I
Sbjct: 270 DTLTITQAVIFCNTKRKVDFLSEKMRSSNFTVSSMHGDMPQKERDEIMNQFRTGESRVLI 329

Query: 300 ATDVAARGIDLPDLELVIHAELSSN 324
            TDV ARGID+  + LVI+ +L + 
Sbjct: 330 TTDVFARGIDVHQVSLVINYDLPTT 354


>gi|73973757|ref|XP_853740.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
           [Canis familiaris]
          Length = 646

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 116/360 (32%), Positives = 188/360 (52%), Gaps = 6/360 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V+ E     G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 245 FQYYPEVM-ENFKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 303

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL+ 
Sbjct: 304 SQPVIREKRNGPGMLVLTPTRELALQVEAECS-KYSYKGLKSVCIYGGGDRNGQIQDLKK 362

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I + +LD  P  R+ 
Sbjct: 363 GVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQT 421

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT   A+  LA++Y K  + V + + +    S +    ++    ++ + I   L  
Sbjct: 422 IMTSATWPYAVRRLAQSYLKAPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQRFLES 481

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             +++  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IA
Sbjct: 482 ISSQDKVIVFVSRKAIADHLSSDLILQHVSVESLHGNREQCDRERALENFKTGKVRILIA 541

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ +I +N  R A  L 
Sbjct: 542 TDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLITRNDWRVAGELI 601


>gi|293373023|ref|ZP_06619392.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292632091|gb|EFF50700.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 444

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 19/346 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I  AL       L  +QEA L      KDV++ + TGSGKT+A+ L L  TL   +D 
Sbjct: 6   EIIQSALRNLKIEELNPMQEASLEQATGRKDVILLSPTGSGKTLAYLLLLLLTLKPNDDS 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHI 127
                    L + P+RELA+Q+    + +   T      C GG  +  E++  L N   I
Sbjct: 66  VQ------VLILVPSRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAI 117

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           ++GTPGR+ DH+     N   ++ +++DE D+ L+ GF D++  I+   P  ++ ++ SA
Sbjct: 118 IIGTPGRITDHLSKGNFNPETIETLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSA 177

Query: 188 TIS---PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           T +   P  T L +      V++N  S++   Q S +    VL    D+ + + N+L   
Sbjct: 178 TDAAEIPEFTGLNR-----TVKLNFLSDDSEEQESRLKLMKVLSPSKDKIDTLYNLLCTL 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G+ ++IVFC+ R +V R  ++LA+         G + Q +R  AL   R+G   V I+TD
Sbjct: 233 GSSSSIVFCNHRDAVDRVHQLLADKKLLAERFHGGMEQPDRERALYKFRNGSCHVLISTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARG+D+P++  +IH  L  N E   HR+GRT R    G S  ++
Sbjct: 293 LAARGLDIPEVGHIIHYHLPVNEEAFTHRNGRTARWDATGTSYLIL 338


>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 977

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 185/371 (49%), Gaps = 38/371 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +   L   ++     
Sbjct: 43  KAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQILKGHSE----V 98

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   +++ TP
Sbjct: 99  VGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTP 158

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FSAT+   
Sbjct: 159 GRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFSATLPSQ 218

Query: 193 ITTLA----KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-------- 240
           +T  +    ++     +R+++  E+     +D   +      +  A+V +LR        
Sbjct: 219 LTQFSRAGLRSESTQFIRLDV--EHTISDTLDLWFLYTTADSKPAALVALLRKLQSMSNK 276

Query: 241 --------------------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                                  +   IVF +TR +V  F  +L +       + G + Q
Sbjct: 277 STGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQ 336

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG 
Sbjct: 337 TQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGA 396

Query: 341 KGMSVFVIPQN 351
           KG+   ++  +
Sbjct: 397 KGLCASLVTHD 407


>gi|71747626|ref|XP_822868.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832536|gb|EAN78040.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 604

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 117/372 (31%), Positives = 195/372 (52%), Gaps = 20/372 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++    ++  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +     
Sbjct: 118 PHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIVEIITRVG- 176

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            F   S   A+ I PTREL +Q+ G  L+ L    G V    CIGG+S  +E   L +G 
Sbjct: 177 -FRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAFKLVSGM 235

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH++        +L  + +DEAD +LD GF DD+  I+   P++R+  +
Sbjct: 236 MVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPRQRQTFL 295

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIA-SENRQHSD-IDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ +  + +++   E++   D ++   V+     R   + + +R 
Sbjct: 296 FSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVLYHFVRR 355

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V   T
Sbjct: 356 NLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLFTT 415

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++ F++PQ      E+LF
Sbjct: 416 DVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRTGNALMFLLPQ------EKLF 469

Query: 361 -----REANVSV 367
                 +A+VSV
Sbjct: 470 LKYLHDDAHVSV 481


>gi|297806553|ref|XP_002871160.1| hypothetical protein ARALYDRAFT_908458 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316997|gb|EFH47419.1| hypothetical protein ARALYDRAFT_908458 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 593

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 192/360 (53%), Gaps = 21/360 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++  +   T VQ A +      KDV V A TGSGKT+AF + L   +L  +  F 
Sbjct: 27  IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRSTSFP 85

Query: 71  PASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQN-GAHI 127
           P     + + I+PTREL+ Q+    +   +    V +V  +GG  V  + + ++  G ++
Sbjct: 86  PKPHQVMGVIISPTRELSSQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNL 145

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGRL D + R + L+  +L+ ++LDEAD +L++GF+  + +I+   PK+RR  +FS
Sbjct: 146 LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-----------RAVLVALSDRDNAI 235
           AT +  +  LAK   ++ VRV + ++++  S   +             +      + + +
Sbjct: 206 ATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQFTNSKTPSGLHLEYIECEADKKSSQL 265

Query: 236 VNILRYHGAKNAIVFCSTRASVSRF----TKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V++L  +  K  IVF  T ASV  +    +K+ A     ++ + G++ Q  R  AL    
Sbjct: 266 VDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFT 325

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
              +   + TDVAARG+D+P ++ V+  +   +P    HR+GRT R GR G + VF++P+
Sbjct: 326 KASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRLGKAIVFLLPK 385


>gi|212534924|ref|XP_002147618.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070017|gb|EEA24107.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
          Length = 286

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 140/239 (58%), Gaps = 1/239 (0%)

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           CIGG +V  + R L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+
Sbjct: 14  CIGGTNVGEDIRKLEYGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFRE 73

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            I  +    P   ++++ SAT+   +  +   +  D VR+ +  +      +    + V 
Sbjct: 74  QIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVE 133

Query: 228 LSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             + + + + ++        A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + 
Sbjct: 134 KEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSI 193

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +Q  R G +RV I+TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++
Sbjct: 194 MQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAI 252


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 197/376 (52%), Gaps = 21/376 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 128 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 186

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  TL  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 187 LQPTLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 239

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 240 IEELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 299

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 300 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 358

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 359 HTFLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGK 418

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 419 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 478

Query: 355 RAERL---FREANVSV 367
            A  L      AN S+
Sbjct: 479 VASELINILERANQSI 494


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 183/369 (49%), Gaps = 34/369 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L  A   +  
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAY-LLPAIVHINH 156

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +                            G 
Sbjct: 157 QPYLERGDGPICLVLAPTRELAQQVQQVAD--------------------------DYGV 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 191 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    A
Sbjct: 251 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 310

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 311 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 370

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--R 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  +
Sbjct: 371 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 430

Query: 359 LFREANVSV 367
           +  EAN ++
Sbjct: 431 VLEEANQAI 439


>gi|323354469|gb|EGA86308.1| Hca4p [Saccharomyces cerevisiae VL3]
          Length = 770

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|300176647|emb|CBK24312.2| unnamed protein product [Blastocystis hominis]
          Length = 348

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 171/323 (52%), Gaps = 7/323 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  + P L   D +  AQ+G+GKT  F +A A  +L  ND   P++    L
Sbjct: 11  GFEKPSVIQQKAILPVLEGHDTIAQAQSGTGKTGTFCIA-ALQMLDLND---PSTQ--VL 64

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q+   L  L     V +  C+GG ++  + + L+    ++VGTPGR+ D 
Sbjct: 65  IMAPTRELALQIFNVLRHLSHFMNVTMHCCVGGTALQEDMKMLEGSIQMIVGTPGRVNDL 124

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           ++   LN+S+ K   LDEADEML  GF++ I  +  S     ++ +FSAT+   I  ++K
Sbjct: 125 LQRGLLNLSNCKLFCLDEADEMLSRGFKEQIYEVFQSLKDNVQVALFSATMPQDILDISK 184

Query: 199 NYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D VR+ +  +      I  +   +   S +   + ++        AI++C+TR  V
Sbjct: 185 KFMRDPVRILVKKDELTLEGIKQFYVEMDKESWKFETLCDLYESITIAQAIIYCNTRRKV 244

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ +    F   A+ G++  Q R++ L+  R G +RV I TD+ ARGID+  + LV+
Sbjct: 245 DWLTRSMRNKDFVTSAIHGDMDMQVRNSILKEFRSGASRVLITTDLLARGIDVQQVSLVV 304

Query: 318 HAELSSNPENLLHRSGRTGRAGR 340
           + +  ++ EN +HR      + R
Sbjct: 305 NYDFPTDRENYIHRYCHQLHSAR 327


>gi|300122648|emb|CBK23215.2| unnamed protein product [Blastocystis hominis]
          Length = 624

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 204/404 (50%), Gaps = 33/404 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ +A+ +  + + T VQE ++   +  KDV V A TGSGKT+AF + L   L  ++
Sbjct: 15  MPEIL-DAVKDLSFESPTPVQETVIPYFISHKDVNVIACTGSGKTLAFLIPLFQILWNKS 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125
             FS       + I+PTRELA+Q     +    K   +  V + G  +  + + L N   
Sbjct: 74  CSFSRGQVG-GVIISPTRELAMQTYSVAQRFIEKCDKMHLVLLTG-GIQDDVKQLSNDKG 131

Query: 126 HIVVGTPGRLCDHI-RGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I++ TPGRL D + R +G L+   L+ ++LDEAD +LDLG    I FIL   PK+RR  
Sbjct: 132 LILIATPGRLKDIMERQQGKLSFRELEVLILDEADVLLDLGHAATINFILSKLPKQRRTG 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR------DNAIVN 237
           +FSAT +  ++ L K   ++ ++V I  +NR       +AV V L +       D  +  
Sbjct: 192 LFSATEADGVSALCKAGLRNPIKVKIEIKNRNQ----IQAVPVQLKNYYTILPSDTKLGF 247

Query: 238 ILRY---HGAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMM 290
           +LR+   H  +  IVF  T A V   T  L      +  ++ +L G + Q++R   ++  
Sbjct: 248 LLRFIHLHPQEKIIVFFLTCAQVDFLTSALLSLNILNGIKLRSLHGRMVQKKRVKTMEDF 307

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R     V   TDVAARGID+PD++ +I  +   +P   +HR GRT RAG+KG S+  +  
Sbjct: 308 RKPEPGVLFCTDVAARGIDIPDVDWIIQFDPPQDPAFFVHRVGRTARAGKKGQSLLFLES 367

Query: 351 NMQRRAERLFREANVSVVWEPA----------PSVEAIRERDAQ 384
             +       R     + WE             ++++IRER A+
Sbjct: 368 TEEAYVSFTRRRGVPLIEWEEKWDEAMRKESLETLQSIRERCAK 411


>gi|300214777|gb|ADJ79193.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 440

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ- 122
            D         A+   P+RELA Q+    + L  ++   + +   +GG    R+   L+ 
Sbjct: 68  KDEVQ------AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   V     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAI 344


>gi|294461150|gb|ADE76139.1| unknown [Picea sitchensis]
          Length = 427

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 182/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L   STL     +  P +
Sbjct: 60  AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL---STL----QQIEPVA 112

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             +A L +  TRELA Q+  E E ++   T + VAV  GGV++   +  L+N   HIVVG
Sbjct: 113 GQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNECPHIVVG 172

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ +++  +LDE D ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 173 TPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVMMFSATL 232

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +   L  L +++  + ++L        
Sbjct: 233 SKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDALDFNQV 291

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +    +   K+L E  F  + +   ++Q+ER    +  ++G  R+ +ATD+  RG
Sbjct: 292 VIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRG 351

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +V++ ++  + +  LHR GR GR G KG+++
Sbjct: 352 IDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAI 389


>gi|226292640|gb|EEH48060.1| ATP-dependent RNA helicase eIF4A [Paracoccidioides brasiliensis
           Pb18]
          Length = 366

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/328 (33%), Positives = 171/328 (52%), Gaps = 18/328 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            E IP+  G      G ++L S  EA  +P LR       AQ+G+GKT  F ++     L
Sbjct: 8   LEEIPEASG------GTMHLYS--EAGHHPMLRCHR---QAQSGTGKTATFSISA----L 52

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + D  +   A  AL +APTRELA Q+ + +  +     +    CIGG+SV  + + LQ 
Sbjct: 53  QKVD--TNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVRDDMKALQE 110

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGR+ D I+ + L   H+K  VLDEADEML  GF + I  I    P+  +++
Sbjct: 111 GPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVV 170

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYH 242
           + SAT+   +  +   + +D VR+ +         I    + V   + + + + ++    
Sbjct: 171 LLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 230

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC+TR  V   T  L    F V A+ G++ Q +R   ++  R G +RV IATD
Sbjct: 231 TITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATD 290

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLH 330
           + ARGID+  + LVI+ +L +N EN +H
Sbjct: 291 LLARGIDVQQVSLVINYDLPANRENYIH 318


>gi|332020300|gb|EGI60731.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 462

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/317 (33%), Positives = 163/317 (51%), Gaps = 9/317 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +   GY   T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 148 IQYFEEGNFPPYVMEGIRREGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILP- 206

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           A   +    R +    P+ L +APTRELA Q+ +E+   + +T  V   CI GG     +
Sbjct: 207 AIVHIIHQPRINTGDGPIVLILAPTRELAQQI-QEVANSFGETAAVRNTCIFGGAPKGPQ 265

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 266 AHDLERGIEICIATPGRLIDFLEKGTTNLCRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 325

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R++LM+SAT    +  LA+++  D V +NI S     + +I     +    ++D+ + 
Sbjct: 326 PDRQVLMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCQEYEKDSKLY 385

Query: 237 NILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +L+          I+F  T+  V   T+ +    +Q V + G+ +QQER + LQ  R G
Sbjct: 386 RLLQEIDTEKENKTIIFVETKRKVDDLTRNIRREGWQAVCIHGDKNQQERDHVLQEFRSG 445

Query: 294 RARVCIATDVAARGIDL 310
           RA + +ATDVAARG+ +
Sbjct: 446 RAPILVATDVAARGLGM 462


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 174/349 (49%), Gaps = 3/349 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+   T VQE  +   L  +D+L SA TG+GKT AF +  A   L +  R  P  
Sbjct: 17  AIKELGFERPTQVQEEAIPHALDGRDILASAPTGTGKTAAFVIP-ALQYLQDFPRKKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+Q+  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARM-LILTPTRELAMQITEQARQLAKHTRLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP-A 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT+    
Sbjct: 135 RLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRWRKQTLLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +     +   +   +      R+   I               ++ ++    A+ +IVF  
Sbjct: 195 VEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLELLKVILTQQAERSIVFIK 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++     L         + GE+ Q  R+NA+   R+G   + +ATDVAARGID+PD
Sbjct: 255 TRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINILLATDVAARGIDIPD 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +  VI+ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +R+ R
Sbjct: 315 VSHVINFDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQMMMDRVAR 363


>gi|190409466|gb|EDV12731.1| RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271064|gb|EEU06165.1| Hca4p [Saccharomyces cerevisiae JAY291]
 gi|323337099|gb|EGA78355.1| Hca4p [Saccharomyces cerevisiae Vin13]
          Length = 770

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|68074823|ref|XP_679328.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56500050|emb|CAH96512.1| RNA helicase , putative [Plasmodium berghei]
          Length = 421

 Score =  163 bits (412), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 178/334 (53%), Gaps = 19/334 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  L   +  K+V+ S++TG+GKT+ +   +   L           A   L + PT
Sbjct: 24  TKIQKLCLPLIIEGKNVIGSSETGTGKTICYCWGMLQELNKN------LYAIFGLILLPT 77

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           REL  Q+  + +    K GV +  CIGG S+  +R+ + +  HIVVGTPGR+ D I    
Sbjct: 78  RELVFQIVEQFQLYGNKIGVKILSCIGGFSLIDQRKSILSKPHIVVGTPGRVSD-ILDDC 136

Query: 144 LNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKK-----RRMLMFSATISPAIT 194
           +++ +    LK +VLDEAD +L   F + ++ IL++ PK+     RR L FS+TI+ +I 
Sbjct: 137 IDVKNCFKRLKFLVLDEADLLLQKSFEEKLKIILNNIPKEVFGEPRRTLFFSSTITDSIN 196

Query: 195 TLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NAIVFCS 252
            L K +  D  + VN   + +   ++D R + +    +   +V IL+    + + I+F +
Sbjct: 197 LLIKTFPNDKLILVNANKKQKPLKNLDQRYIYIDSIAQMTYLVYILKNKLTEMSGIIFTA 256

Query: 253 TRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
                     VL +   F + ++     Q++R ++L   ++G  ++ IATD+ +RGID+P
Sbjct: 257 NSYKCELIYTVLNSLGSFSIESIHSSKDQRKRMSSLLKFKNGLCKILIATDIISRGIDIP 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +  VI+ +  ++    +HR GRT RA RKG+S+
Sbjct: 317 KVAFVINFDFPNDTIQYIHRIGRTARANRKGLSI 350


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 171/337 (50%), Gaps = 14/337 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLA--LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
           +D++  A+TGSGKT+AF L   + +T      R      P  L + PTRELA QV +E+ 
Sbjct: 96  RDIVSIAKTGSGKTLAFILPGIIHTTKQPPRGR---GEGPSVLVLLPTRELAQQV-QEVS 151

Query: 96  WLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             Y K  G+ V    GG +   + RDL+ G  + + TPGRL D +     N+     +VL
Sbjct: 152 REYCKAMGLSVTCLFGGAARGSQARDLERGVDVAIATPGRLLDFLESGTTNLRRCSYLVL 211

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-EN 213
           DEAD MLD+GF   I  I+      R+ LMFSAT    +  LA ++Q D   +N+ S E 
Sbjct: 212 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLEL 271

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
             + +I     +V    +   ++ +L           +VF  T+      T+ +    + 
Sbjct: 272 AANHNITQVVEVVEEYQKQGRMMTLLTDIMNQPECKTLVFVETKRKADDLTRSMRRDGWP 331

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + + G+ +Q ER   L   + G+  + +ATDVAARG+D+ D++ VI+ +  +N E+ +H
Sbjct: 332 TLCIHGDKNQGERDWVLSEFKSGKTPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVH 391

Query: 331 RSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           R GRT R  +KG +  F  P N  +  +  ++  EAN
Sbjct: 392 RIGRTARCEKKGTAYTFFTPSNAPKARDLIKVMEEAN 428


>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 183/331 (55%), Gaps = 8/331 (2%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELE 95
           D++  A+TGSGKT  + L     +  +N   +  +  + P  L +APTREL +Q+ +++ 
Sbjct: 139 DLIGVAETGSGKTFGYLLPGLIQIKCQNYGSNFRNRINGPEILILAPTRELVMQIAQQVS 198

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                  + VA   GG +  ++ + ++    I+V  PGRL D ++   L++S +  +V+D
Sbjct: 199 LFMKPNNLTVATAYGGQNRDQQAQQIKRNPDILVACPGRLKDFLQEGILDLSKVTYLVID 258

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENR 214
           EAD +LD+GF DD+ FI+  + + R+ + FSAT   A+  L+ ++  +D + V +   N 
Sbjct: 259 EADRLLDMGFEDDVRFIVQRTRQDRQTVFFSATWPKAVRNLSLDFCAEDPIYVQVGRSNL 318

Query: 215 Q-HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVV 272
             + +ID   + +  + +   +++IL      + + +F  TR S  + +  + +  +  V
Sbjct: 319 TVNKNIDQEIICLYNNQKLQTLLDILDQLKINDKVLIFAETRISCEQLSVDMTQEGYYAV 378

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           AL G  +Q +R + ++  + G  ++  ATD+A+RG+D+ D+ +VI+ +     ++ +HR 
Sbjct: 379 ALHGNKTQGQRDSIMECYKKGDTKLLCATDLASRGLDVSDITVVINYDFPKYFDDYIHRI 438

Query: 333 GRTGRAGRKG--MSVFVIPQNMQRRAERLFR 361
           GRTGRAGRKG  +S F I ++  + A  L +
Sbjct: 439 GRTGRAGRKGRAISFFAIGKDQPQMARELLK 469


>gi|322828080|gb|EFZ32019.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 874

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 185/357 (51%), Gaps = 13/357 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q     L   GY  +T +Q   L+  L   DVL +A+TGSGKT+ F + +   
Sbjct: 69  FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  ++  A    AL ++PTRELA+Q+ + L+ +  K     A+  GG  V  ER+ L
Sbjct: 129 LFVE--QWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRL 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +++VGTPGR+  H+     L   +++  V+DEAD +LD+GFRD I  I+   P  R
Sbjct: 187 A-AINVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTAR 245

Query: 181 RMLMFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT +  +  LA+   ++   V  + ++     + +    ++V L  + +A++  
Sbjct: 246 QTLLFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMF 305

Query: 239 LRYHGAKNAIVFCST----RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           L+ H     +VF ST    R     F+K+L +     + L+ ++ Q  R          +
Sbjct: 306 LKRHPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCK 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           A V   TD+AARG+D P +   +  +   + +  +HR+GRT RAG +G+S +F+ PQ
Sbjct: 366 AAVLFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQ 422


>gi|290771182|emb|CAY80746.2| Hca4p [Saccharomyces cerevisiae EC1118]
          Length = 770

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 192/372 (51%), Gaps = 17/372 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +   
Sbjct: 159 RISR-INILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSP 217

Query: 179 KRRMLMFSATISPAITTLAK----NYQ----KDAVRVNIASENRQHSDIDYRAVLVALSD 230
            R+ L+FSAT S ++  LA+    +Y+     D +  ++  E      +    + V L+D
Sbjct: 218 SRQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQ 288
           + + + + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L 
Sbjct: 278 KLDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLD 337

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S+ ++
Sbjct: 338 KFNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIML 397

Query: 349 -PQNMQRRAERL 359
            PQ  +   +RL
Sbjct: 398 TPQEQEAFLKRL 409


>gi|301777982|ref|XP_002924414.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
           [Ailuropoda melanoleuca]
          Length = 739

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 189/395 (47%), Gaps = 54/395 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +      +TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 141 PHLISTINTVLNMTRMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKS 200

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 201 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGERRKSEKARLRKGIN 260

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++   ++ ++LDEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 261 ILISTPGRLVDHIKSTKNIHFRRIQWLILDEADRILDLGFEKDITVILNAINAECQKRQN 320

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----LVALSDRDN---- 233
           ++ SAT++  +T LA     + VR+++  ++   SD   R V     L A  + D+    
Sbjct: 321 VLLSATLTEGVTRLADISLLNPVRISVLDQHHGQSDPKGREVPEASPLSAAGEPDSFAIP 380

Query: 234 ---------------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
                                 I+   ++   +  IVF S+   V     +  + L    
Sbjct: 381 ESLDQHVTLVPSKLRLVSLAAFILQQCKFEKDQKMIVFFSSCELVEFHYHLFVQTLLGRS 440

Query: 269 ---------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
                           + + L G + Q+ER+   Q     +  V + TDVAARG+DLP +
Sbjct: 441 GAPASGQLLPSAATRLKFLRLHGNMEQEERTAVFQEFSHSKTGVLLCTDVAARGLDLPQV 500

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++     S+P   +HR GRT R G +G S+ ++
Sbjct: 501 TWIVQYNAPSSPAEYIHRIGRTARIGCRGSSLLIL 535


>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
 gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
          Length = 408

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 179/350 (51%), Gaps = 6/350 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  +  ++ E+L   G+   T++Q+  +   + +KD+L  A TG+GKT +F L    
Sbjct: 2   LFEDFLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    RF   +    L + PTRELA Q+ R    L     + +A+  GG+    +   
Sbjct: 62  HLIDFPRRFGGQAR--VLVLTPTRELASQIHRYASHLSTDLDLDIAIITGGMPYGPQEDA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   I+V TPGRL +++     N   ++  V+DEAD MLD+GF   +E +   S  ++
Sbjct: 120 LKNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRK 179

Query: 181 RMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-NI 238
           + ++FSAT+  + +   +     + V+V   +   + + I     +    +   A++ NI
Sbjct: 180 QTMLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       IVF  TR  V+    +L         + G++ Q++R  AL     G   V 
Sbjct: 240 LRQEDVTRTIVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRT RAG KG ++ ++
Sbjct: 300 LATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLV 349


>gi|189461309|ref|ZP_03010094.1| hypothetical protein BACCOP_01959 [Bacteroides coprocola DSM 17136]
 gi|189431838|gb|EDV00823.1| hypothetical protein BACCOP_01959 [Bacteroides coprocola DSM 17136]
          Length = 323

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/325 (33%), Positives = 174/325 (53%), Gaps = 8/325 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEDSVLQALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIG--GVSVHR 116
           + L   +    PA A   + ++PTRELA Q+ +++E + Y      VA+  G  G+   +
Sbjct: 61  NEL---SKGGYPADAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFADDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PKKR+ +MFSAT+   I  LAK   ++ V V +A  ++    I   A +   + +   I 
Sbjct: 178 PKKRQTIMFSATMPAKIQQLAKTILQNPVEVKLAV-SKPAEKIIQAAYICYEAQKLGIIE 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L      V  +  +L Q +R   +   R+GR  
Sbjct: 237 SLFSQQKPERVIIFASSKLKVKEVAKSLKRMNLNVGEMHSDLEQNQRDAIMHEFRNGRIS 296

Query: 297 VCIATDVAARGIDLPDLELVIHAEL 321
           + +ATD+ ARGID+ D+ LVI+ ++
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDV 321


>gi|227891108|ref|ZP_04008913.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866982|gb|EEJ74403.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 440

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ- 122
            D         A+   P+RELA Q+    + L  ++   + +   +GG    R+   L+ 
Sbjct: 68  KDEVQ------AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   V     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAI 344


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 171/337 (50%), Gaps = 14/337 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLA--LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
           +D++  A+TGSGKT+AF L   + +T      R      P  L + PTRELA QV +E+ 
Sbjct: 229 RDIVSIAKTGSGKTLAFILPGIIHTTKQPPRGR---GEGPSVLVLLPTRELAQQV-QEVS 284

Query: 96  WLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
             Y K  G+ V    GG +   + RDL+ G  + + TPGRL D +     N+     +VL
Sbjct: 285 REYCKAMGLSVTCLFGGAARGSQARDLERGVDVAIATPGRLLDFLESGTTNLRRCSYLVL 344

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-EN 213
           DEAD MLD+GF   I  I+      R+ LMFSAT    +  LA ++Q D   +N+ S E 
Sbjct: 345 DEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLEL 404

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
             + +I     +V    +   ++ +L           +VF  T+      T+ +    + 
Sbjct: 405 AANHNITQVVEVVEEYQKQGRMMTLLTDIMNQPECKTLVFVETKRKADDLTRSMRRDGWP 464

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + + G+ +Q ER   L   + G+  + +ATDVAARG+D+ D++ VI+ +  +N E+ +H
Sbjct: 465 TLCIHGDKNQGERDWVLSEFKSGKTPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVH 524

Query: 331 RSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREAN 364
           R GRT R  +KG +  F  P N  +  +  ++  EAN
Sbjct: 525 RIGRTARCEKKGTAYTFFTPSNAPKARDLIKVMEEAN 561


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 193/394 (48%), Gaps = 16/394 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F N P ++ E + + G+   + +Q  +    L  KD +  +QTGSGKT+AF L     + 
Sbjct: 106 FGNNPAIMAE-IEKNGFEKPSPIQSQMWPILLCGKDCIGVSQTGSGKTLAFLLPAFLHID 164

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             LA+ ++     +P  L ++PTRELA Q+  E++  Y+  G       GG S   + + 
Sbjct: 165 AQLAQYEKNEKKPSPFVLVLSPTRELAQQIEGEVQ-KYSYNGYKSVCLYGGGSRSEQVQS 223

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            + G  IV+ TPGRL D      ++++ +  VVLDEAD MLD+GF   I  IL      R
Sbjct: 224 CKGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEIRPDR 283

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + + SAT    +  L   Y K A+  VN + +      +      +   +R   +  I+
Sbjct: 284 LVALTSATWPEGVRNLTDRYTKQAIMAVNGSLDLTSCKSVTQHFEFIPHENRFERVCEIV 343

Query: 240 RY----HG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +    HG +   I+F  ++      +            L G  SQ +R  +L+M+R G 
Sbjct: 344 NFLNNAHGNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKMLRTGE 403

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATD+A+RGID+PD+  V++ +   + E  +HR GRTGRAGRKG S+  +  N + 
Sbjct: 404 VQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWWNDRS 463

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
             + L     +S++ +    V    +RDA R  Q
Sbjct: 464 NFDGL-----ISILEKSGQEVPEQLKRDAARYRQ 492


>gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980]
 gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 638

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/360 (30%), Positives = 180/360 (50%), Gaps = 25/360 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E +   GY   T +Q+  L    +  DV+  AQTGSGKT AF + + S L+ +  + 
Sbjct: 165 VMLENVKLAGYHVPTPIQQYCLPAVKKGHDVVACAQTGSGKTAAFLIPILSKLMGKAKKL 224

Query: 70  S-----PAS-----------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           +     PA+            PL + + P+RELA Q+  E      +T +   V  GG  
Sbjct: 225 AAPRPNPATYVPSQDNYIKAEPLVVIVCPSRELATQIFDEARRFCYRTMLRPCVVYGGGP 284

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +  +   L  G  +++GTPGRLCD IR    L +  LK +V+DEADEMLD  + +++  I
Sbjct: 285 LAEQLGQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSSWEEELRQI 344

Query: 173 L---DSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +   D        +MFSAT       +AK +   D VR+ +      HS+I    + V  
Sbjct: 345 MSGGDQEEGNINYMMFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHSNIKQDIIYVEA 404

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++L        I+F +T+ +       L  +     ++  + +Q+ER ++++
Sbjct: 405 ASKRKALYDLLLSIPPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSDRTQREREDSIR 464

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP----ENLLHRSGRTGRAGRKGMS 344
             R+GR  + IAT V+ARG+D+ ++  VI+ +L S      E   HR GRTGR G +G++
Sbjct: 465 AFRNGRMPILIATGVSARGLDVHNIMHVINFDLPSQAHGGIEEYTHRIGRTGRIGNRGLA 524


>gi|50290649|ref|XP_447757.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74609416|sp|Q6FPT7|DBP4_CANGA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49527068|emb|CAG60704.1| unnamed protein product [Candida glabrata]
          Length = 765

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 191/358 (53%), Gaps = 13/358 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P  +   + L+E  ++ +T +Q   +   L+  DV  +A+TGSGKT+AF + +  
Sbjct: 42  FFKDLPISKSTLKGLNEASFIKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTLAFLVPVLE 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R++      AL I+PTRELA+Q+   L  + + T     + IGG  V+ E   
Sbjct: 102 KLYRE--RWTEFDGLGALIISPTRELAMQIYEVLVKIGSHTQFSAGLVIGGKDVNFELER 159

Query: 121 LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    +I++GTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  
Sbjct: 160 IAK-INILIGTPGRILQHMDQAVGLNTSNLQMLVLDEADRCLDMGFQKTLDAIVGNLPPD 218

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI--ASENRQHS--DIDYRAVLVALSDRDNAI 235
           R+ L+FSAT S +I+ LA+    D  ++    +SE+   +   +    ++  L+D+ + +
Sbjct: 219 RQTLLFSATQSQSISDLARLSLTDYKKIGTIDSSEDGPATPKTLQQSYIIADLADKLDVL 278

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDG 293
            + ++ H     IVF S+   V    +   +      ++ L G   Q+ R+  L      
Sbjct: 279 YSFIKSHLKTKMIVFFSSSKQVHFVYETFRKMQPGISLLHLHGRQKQRARTETLDKFFRA 338

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ 350
           +     ATDV ARGID P ++ VI  +   + +  +HR GR  R G+KG S+ ++ PQ
Sbjct: 339 QQVCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRAARYGKKGRSLIILTPQ 396


>gi|157130314|ref|XP_001661885.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871945|gb|EAT36170.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 619

 Score =  163 bits (412), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 174/350 (49%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I  AL +R     + +Q   +   L  +D++  A TGSGKT+ F L +    L + 
Sbjct: 187 FPKAILAALEKRNIRKPSPIQVQGIPAVLSGRDLIGIAFTGSGKTLVFVLPIVMFSLEQE 246

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEW------LYAKTGVVVAVCIGGVSVHRER 118
            R  F     P  L I P+RELA Q    +++      +     +  A+ IGGV V+   
Sbjct: 247 LRLPFISKEGPYGLIICPSRELAKQTHDIIQYYCQHLQMSGMPEIRSALAIGGVPVNDAL 306

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +Q G HI+V TPGRL D +  K L +   + + +DEAD M+D GF +DI  I      
Sbjct: 307 ATIQQGCHIMVATPGRLMDMLDKKLLKLDVCRYLCMDEADRMIDAGFEEDIRTIFSYFKG 366

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V +N+        ++      V    +   +++ 
Sbjct: 367 QRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKVVYLLDC 426

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++F   +  V    + L     + VA+ G   Q+ER  +++  R+    V 
Sbjct: 427 LQ-KTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVEGFRNQEKDVL 485

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G KG++   I
Sbjct: 486 VATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFI 535


>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
          Length = 798

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 247/490 (50%), Gaps = 32/490 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL    R  
Sbjct: 284 ILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILERLLY---RSK 340

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             +    + +APTRELA+Q       L + T +   + +GG+S+  + ++L+    +V+ 
Sbjct: 341 KVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRLRPDVVIA 400

Query: 131 TPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT+
Sbjct: 401 TPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATM 460

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNILRYHGA 244
           + ++  L +      VR+ + S+ +  S++  R   V L       R   +V+I +    
Sbjct: 461 TSSVDRLIRAGLNKPVRIQVDSQKKTASNL--RQEFVRLRPGREKKRMGYLVHICKTLYT 518

Query: 245 KNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  I+F   +  ++  T+++   L      L G ++Q +R  +++  RDG+    +ATD+
Sbjct: 519 ERVIIFFRQK-KIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLLATDL 577

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  ++ VI+ E   N E  +HR GRT RAGR G+++ +  +  ++  +   R  
Sbjct: 578 ASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKAAVRAG 637

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                   +  +EA    DA +  QD   +D ++G+ K   +++  + + +++    +++
Sbjct: 638 KAQGAKITSRIIEA---SDADK-WQDQ--IDEMEGEIK---EIMQEEKEEKQLQQVEMQV 688

Query: 424 HRA-GLCAPEEITPVSLVSGRDRF--RDDSRAFKVGG-----GSRDNFKGSSWFSLSVGS 475
            +   +   EE   ++    R  F  +DD RA K+ G     G R+  K  S   LS   
Sbjct: 689 KKGENMIKYEE--EIASRPKRTWFETQDDKRAAKLAGREELNGIREQLKKKSQGKLSNKD 746

Query: 476 KQKAEARWLM 485
           K+K +A+  M
Sbjct: 747 KKKLDAKQEM 756


>gi|156087495|ref|XP_001611154.1| p68 RNA helicase protein [Babesia bovis T2Bo]
 gi|154798408|gb|EDO07586.1| p68 RNA helicase protein, putative [Babesia bovis]
          Length = 568

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 183/373 (49%), Gaps = 11/373 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I   +   G++  T +Q+      L  +DV+  +QTGSGKT+AF L     LLA+   
Sbjct: 192 EAIQRIIKNMGFIEPTPIQKVGWTSCLTGRDVVGVSQTGSGKTLAFLLPGLLHLLAQ-PP 250

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P + P+ L +APTREL  Q   E +       +  A+  GGVS +++++ L  G  I+
Sbjct: 251 VTPGNGPVILILAPTRELCQQTYEETKKFMRVMNLRGAILYGGVSKYQQQQQLTGGVDIM 310

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +    L +  +   VLDEAD MLD+GF   I  I       R+ L+FSAT
Sbjct: 311 VATPGRLLDCLSSGLLRLDRVSYFVLDEADRMLDMGFEPQIRMIASQIRPDRQTLLFSAT 370

Query: 189 ISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNA-IVNILRYHGA-K 245
              +I  LA  + K + + + +  +    +    + V V  SD     + N L      K
Sbjct: 371 WPASIRRLASEFCKTNCIYIQVGDKELTANPNITQTVKVLRSDETFPFLCNFLTTEAYNK 430

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  +R       + LA      +++ G  SQ +R + +   R G   + +ATDVA+
Sbjct: 431 KILIFVESRIGADTLVRDLARRGLNALSIHGNKSQSQRDHTVSQFRSGAVNIMVATDVAS 490

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ-----RRAERLF 360
           RG+D+ +++ V++ ++    E+ +HR GRT R   KG S+ +   +       R A+RL 
Sbjct: 491 RGLDIKNIDYVVNMDVPRTIEDYIHRIGRTARGNMKGNSLLLFVNDYPDPRKARFAQRLI 550

Query: 361 REANVSVVWEPAP 373
               +  V +P P
Sbjct: 551 EV--LKTVRQPVP 561


>gi|71666325|ref|XP_820123.1| eukaryotic initiation factor 4a [Trypanosoma cruzi strain CL
           Brener]
 gi|70885454|gb|EAN98272.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 438

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 12/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 62  FDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L        A  +GG  V  +
Sbjct: 122 LDFRHNVLQ------GLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDD 175

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G+ + VGTPGR+ D  +   +    L+ +VLDEADEML  GF + I  I    P
Sbjct: 176 YRKLQAGSIVAVGTPGRVVDVTKRGAMRTEQLRVLVLDEADEMLSQGFAEQIYEIFRYLP 235

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++ +FSAT+   +  L K + +D  R+ +  E+     I    + V    + + +++
Sbjct: 236 KEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVEEEHKLDTLMD 295

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V  +  E+ +Q+R   +   R+G +RV
Sbjct: 296 LYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRV 355

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N E+ LH
Sbjct: 356 LVTTDLVARGIDVHHVNIVINFDLPTNKESYLH 388


>gi|297678503|ref|XP_002817109.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Pongo
           abelii]
          Length = 648

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-ENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  +L  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPSLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 478 QTFLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELITILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|158290201|ref|XP_001230842.2| AGAP001057-PA [Anopheles gambiae str. PEST]
 gi|157018265|gb|EAU77138.2| AGAP001057-PA [Anopheles gambiae str. PEST]
          Length = 699

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 184/342 (53%), Gaps = 13/342 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+E  +   T +Q   + P +  KD+L +A+TGSGKT+AF + +   L  E  +++    
Sbjct: 32  LAEADFTRPTVIQRESILPAIFGKDILAAAKTGSGKTLAFIIPILERLFVE--KWTRMDG 89

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL I PTRELAVQ+   +  +       + + IGG ++  ER  L N  +I++GTPGR
Sbjct: 90  LGALIITPTRELAVQIYETMTQVGRHHDFTIGLLIGGQNLKYERNRLHN-LNIIIGTPGR 148

Query: 135 LCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L  H+    L + ++LK +VLDEAD  LD+GF   ++ I+++ P+ R+ ++FSAT + ++
Sbjct: 149 LLQHMDQNPLFDTTNLKILVLDEADRCLDMGFSATMDSIIENLPEVRQTVLFSATQTNSV 208

Query: 194 TTLAKNYQKDAVRVNIASENRQH----SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             LA+   K    V IA    +     + +    V+V L+++   + + L+ H  +  IV
Sbjct: 209 RDLAR--VKLVNPVQIAPHEHEQIATPAKLQQSYVVVDLANKLTMLWSFLQTHPKQKVIV 266

Query: 250 FCSTRASVSRFTKVLAE--HLFQVVALSGELSQQERSNALQMMRDGRARVC-IATDVAAR 306
           F ST   V  F +V  +      ++ L G ++Q++R+         +  VC +ATDVA+R
Sbjct: 267 FFSTCKQVKYFYQVFKKLRPTSLLLPLYGGMNQEKRNKIYGDFCKKKTNVCLLATDVASR 326

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D P +  V+  +   +    +HR+GRT R    G ++ V+
Sbjct: 327 GLDFPKVNWVVQIDCPEDVAQYIHRAGRTARLNTSGENLLVL 368


>gi|302813999|ref|XP_002988684.1| hypothetical protein SELMODRAFT_128612 [Selaginella moellendorffii]
 gi|300143505|gb|EFJ10195.1| hypothetical protein SELMODRAFT_128612 [Selaginella moellendorffii]
          Length = 594

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 196/389 (50%), Gaps = 53/389 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-------LAS 60
           P+ +     + G++  T VQ A +      KDV V A TGSGKT+AF +        LA+
Sbjct: 18  PETLRVLEQQLGFLRATPVQVATIPLLCSFKDVAVDAATGSGKTLAFVVPVVEILRRLAT 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTGVVVAVCIGGVSVHRE-R 118
             L EN +        A+ I+PTRELA Q+ G   +++     +   + +GG  V  +  
Sbjct: 78  PFLQENVQVG------AMIISPTRELASQIFGVAQKFVKTLENLTALLLVGGTDVTADLE 131

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKA---------------------VVLDE 156
           R  + G ++++GTPGRL D + R   L   HL+A                     ++LDE
Sbjct: 132 RVKEQGGNVLIGTPGRLHDIMERSTALEFRHLEARTSDLSSLDTITSLFIVSFQILILDE 191

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD +LD+GF+  +  I++  PK+RR  +FSAT + A+  L+K   ++ VRV + SE +  
Sbjct: 192 ADRLLDMGFQRQVSAIIELLPKQRRTGLFSATQTQAVEELSKAGLRNPVRVEVRSEVKGA 251

Query: 217 S---------DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE- 266
           S         +I+Y  +     ++ + +VN LR + ++  IV+  T ASV  +  VL   
Sbjct: 252 STTFKTPAGLNIEY--LECEGEEKSSQLVNFLRENASRKTIVYFMTCASVDYWGTVLPRL 309

Query: 267 ---HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
                  +V L G++ Q  R  AL+      A V   TDVAARG+D+P ++ ++  +   
Sbjct: 310 KTLKDVPIVVLHGKMKQSVRVKALEKFTAMPAGVLFCTDVAARGLDIPGVDWIVQYDPPQ 369

Query: 324 NPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
           +P   +HR GRT R GR G + VF++P+ 
Sbjct: 370 DPNVFVHRVGRTARMGRAGDALVFLLPKE 398


>gi|156550340|ref|XP_001606535.1| PREDICTED: similar to ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 425

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 180/345 (52%), Gaps = 11/345 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 52  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---- 106

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA- 125
             S  +    L +  TRELA Q+ +E E +      V V+V  GG+ + ++   L+N   
Sbjct: 107 --STENHVYVLVMCHTRELAFQISKEYERFSKYMQNVKVSVFFGGLPIQKDEEVLKNTCP 164

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLM 184
           HIVVGTPGR+   I+ K LN+ HLK  VLDE D+ML+ L  R D++ I  S+P  ++++M
Sbjct: 165 HIVVGTPGRILALIKSKKLNLKHLKHFVLDECDKMLEQLDMRKDVQEIFRSTPHGKQVMM 224

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT+S  I  + K + +D + V +  E +     +    + +  ++++  +  +L    
Sbjct: 225 FSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYIKLKENEKNKKLFELLDVLE 284

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  +        ++L E  F  + +   ++Q+ER    Q  +D + R+ +AT++
Sbjct: 285 FNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTKYQSFKDFQKRILVATNL 344

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RG+D+  + +V + ++  N +  LHR  R GR G KG+++  I
Sbjct: 345 FGRGMDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFI 389


>gi|322796780|gb|EFZ19207.1| hypothetical protein SINV_02979 [Solenopsis invicta]
          Length = 605

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+ N+T +Q   + P L  +D++ +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 106 KAIKDMGFTNMTEIQAKSIPPLLEGRDLVGAAKTGSGKTLAF--LIPAVELIYKLKFMPR 163

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTREL++Q    L+ L         + +GG S   E + L  G +I+V TP
Sbjct: 164 NGTGVIIMSPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLAKGVNIIVATP 223

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
           GRL DH++        +L+ +V+DEAD +LD+G+ ++++ I++  PK+R+ ++FSAT + 
Sbjct: 224 GRLLDHLQNTPDFLYKNLQCLVIDEADRILDIGYEEELKQIINILPKRRQTMLFSATQTQ 283

Query: 191 --PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               ITTLA   +   V V+   E      +    V      R   +   L+ +  K  +
Sbjct: 284 KVAMITTLALKKEPIYVGVDDDKEMATVEGLQQGYVACPSEKRFLLLFTFLKKNRKKKIM 343

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+++ G+  Q +R+       +      + TDVAARG+
Sbjct: 344 VFFSSCMSVKFHHELLNYIDLPVMSIHGKQKQTKRTTTFYQFCNASTGTLLCTDVAARGL 403

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 404 DIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 444


>gi|189234356|ref|XP_973872.2| PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum]
          Length = 695

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 187/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++ G+  LT +Q   + P L  +D++ +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 143 KAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAF--LIPAVELIYKLKFMPR 200

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L         + +GG S   E + L  G +I+V TP
Sbjct: 201 NGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEAQKLSKGINILVATP 260

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        +L+ +V+DEAD +LD+GF ++++ I++  PK+R+ ++FSAT + 
Sbjct: 261 GRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLPKRRQTMLFSATQTK 320

Query: 192 ---AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              A+T+LA   +   V V+ A      + ++   V+     R   +   L+ +  K  +
Sbjct: 321 KTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLVLFTFLKKNRKKKVM 380

Query: 249 VFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           VF S+  SV +F   L  ++   V+ + G+  Q +R+       +  + + + TDVAARG
Sbjct: 381 VFFSSCMSV-KFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAESGILLCTDVAARG 439

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           +D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 440 LDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 481


>gi|327272752|ref|XP_003221148.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
           [Anolis carolinensis]
          Length = 399

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 164/345 (47%), Gaps = 53/345 (15%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL   
Sbjct: 23  VTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPILQALLETP 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 83  QRF------FALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSLALAKKPH 136

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 137 VIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V IL      
Sbjct: 197 SATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYILNELAGN 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  R   +L    F  + L G+++Q                         
Sbjct: 257 SFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQ------------------------- 291

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
                                + +HR GRT RAGR G S+  + Q
Sbjct: 292 ---------------------DYIHRVGRTARAGRSGKSITFVTQ 315


>gi|71423483|ref|XP_812479.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70877262|gb|EAN90628.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 848

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 184/357 (51%), Gaps = 13/357 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q     L   GY  +T +Q   L+  L   DVL +A+TGSGKT+ F + +   
Sbjct: 70  FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 129

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  ++  A    AL ++PTRELA+Q+ + L+ +  K     A+  GG  V  ER+ L
Sbjct: 130 LFVE--QWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                ++VGTPGR+  H+     L   +++  V+DEAD +LD+GFRD I  I+   P  R
Sbjct: 188 A-AISVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTAR 246

Query: 181 RMLMFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT +  +  LA+   ++   V  + ++     + +    ++V L  + +A++  
Sbjct: 247 QTLLFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMF 306

Query: 239 LRYHGAKNAIVFCST----RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           L+ H     +VF ST    R     F+K+L +     + L+ ++ Q  R          +
Sbjct: 307 LKRHPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCK 366

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           A V   TD+AARG+D P +   +  +   + +  +HR+GRT RAG +G+S +F+ PQ
Sbjct: 367 AAVLFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQ 423


>gi|224073592|ref|XP_002195700.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 31
           [Taeniopygia guttata]
          Length = 707

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 191/397 (48%), Gaps = 59/397 (14%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L+ +D LV +QTGSGKT+A+G+ L  +L     
Sbjct: 123 PHLISTINTVLNICSMTSVQKQTIPVLLQGRDALVRSQTGSGKTLAYGIPLVQSLQGMES 182

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 183 KIQRSDGPYALVLVPTRELALQSFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 242

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRM 182
           I++ TPGRL DHIR  + ++    + +++DEAD +LDLGF  D+  I   L++  + R+ 
Sbjct: 243 ILISTPGRLVDHIRSTECIHFRRTQWLIIDEADRILDLGFEKDVAVILNALNAERETRQN 302

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ----HSDIDYRAV-------------- 224
           ++ SAT++  +T LA     D V ++IA E ++     S  D +A               
Sbjct: 303 VLLSATLTEGVTRLAHISLNDPVSISIADEIQKVPEPASQTDRKASSSSNCMGQENFAVP 362

Query: 225 ---------------LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL- 268
                          LV L+     I+   ++      I+F S+   V  + ++L + L 
Sbjct: 363 ETLQQYVMMVPSKLRLVTLA---AFILQKCKFEKHHKMIIFFSSCEQVEFYHELLVKVLS 419

Query: 269 -----------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
                               + L G++ Q+ER+   Q     +  + + TDVAARG+DLP
Sbjct: 420 GGPESEQPGRSPLSSVSLHFLRLHGDMEQEERTEVFQEFLKSKTGILLCTDVAARGLDLP 479

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  ++     ++P   +HR GRT R G +G S+ V+
Sbjct: 480 QVTWIVQYNAPASPAEYIHRIGRTARIGCRGSSLLVL 516


>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
          Length = 444

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/344 (31%), Positives = 180/344 (52%), Gaps = 26/344 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T++Q+  +   L  +D +  A+TGSGKT+AF L +   L  +           AL + PT
Sbjct: 5   TAIQQNCIPRILGGEDCIGCAKTGSGKTLAFALPILQKLCED------PYGIFALVLTPT 58

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  +   +     +   V +GG+ +  +  +L    HIVV TPGRL DH+    
Sbjct: 59  RELAFQIADQFAAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCN 118

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAKN 199
             ++  +K +VLDEAD +L   F   ++ I  + P+++++L+FSAT++     + ++A N
Sbjct: 119 TFSLKRIKFLVLDEADRLLGGHFDKQLKTIFATLPEQKQVLLFSATMTNDLDNVKSVASN 178

Query: 200 Y-----QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA----IVF 250
                 +KD   +    E      +D R VL      D+ +V ++R   A N     +VF
Sbjct: 179 KVFIWEEKDDAGIATVKE------LDQRYVLCPKDVLDSYLVEVIRTFCATNKNGSIMVF 232

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T  +    +  L +  F  VAL   + Q+ER  AL   +    ++ IATDVAARG+D+
Sbjct: 233 TDTCKNCQLLSMALNDVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGLDI 292

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
            ++ELV++  + + P+  +HR GRT RAGR GM+V  + P +++
Sbjct: 293 HEVELVVNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHDVK 336


>gi|322823143|gb|EFZ28962.1| eukaryotic initiation factor 4a, putative [Trypanosoma cruzi]
          Length = 404

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 12/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSHGFEKPSSIQQRAIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L        A  +GG  V  +
Sbjct: 88  LDFRHNVLQ------GLVLSPTRELALQTAEVITRIGEFLAEGNSSFCATFVGGTRVQDD 141

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G+ + VGTPGR+ D  +   +    L+ +VLDEADEML  GF + I  I    P
Sbjct: 142 YRKLQAGSIVAVGTPGRVVDVTKRGAMRTEQLRVLVLDEADEMLSQGFAEQIYEIFRYLP 201

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++ +FSAT+   +  L K + +D  R+ +  E+     I    + V    + + +++
Sbjct: 202 KEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVEEEHKLDTLMD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V  +  E+ +Q+R   +   R+G +RV
Sbjct: 262 LYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N E+ LH
Sbjct: 322 LVTTDLVARGIDVHHVNIVINFDLPTNKESYLH 354


>gi|226468140|emb|CAX76297.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +   ++         AL
Sbjct: 38  GYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQ------AL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+   ++ + +   V    CIGG  +  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  VLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQGQHVVVGTPGRVIDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  S++K  VLDEAD+ML  GF   I+ I    P+  ++++ SAT+   + T+A+
Sbjct: 152 MNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIAR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
              +D V++ I  E      I    + V+  + +   ++++ +       ++F ++    
Sbjct: 212 GIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKA 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           S  ++ LA   FQV  ++ ++ Q++R   ++  R GR+R+ ++TDV ARGID+  + LV+
Sbjct: 272 SYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLSTDVLARGIDVQQVSLVV 331

Query: 318 HAELSSNPENLLH 330
           + +L  + E  +H
Sbjct: 332 NYDLPGDRETYIH 344


>gi|227363253|ref|ZP_03847385.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|325682139|ref|ZP_08161657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
 gi|227071709|gb|EEI10000.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|324978783|gb|EGC15732.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
          Length = 467

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 172/335 (51%), Gaps = 9/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + S +  E+       
Sbjct: 28  AIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKIKPEDQTVQ--- 84

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
              A+   P+RELA Q+    + L  YA   + +   +GG     +   L +    +V+G
Sbjct: 85  ---AVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIG 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    P   +M++FSATI 
Sbjct: 142 TPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDLQMMVFSATIP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y ++ V   I +E   + D+D   +     DR+  I  +L       A+VF
Sbjct: 202 QKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLLTLGEPYLALVF 261

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+    + T+ L     +V  + G L  + R   ++ +RD   +  +ATD+AARGID+
Sbjct: 262 ANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDI 321

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L ++ E  +HR GRTGR G KG ++
Sbjct: 322 DGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAI 356


>gi|320168710|gb|EFW45609.1| myc-regulated DEAD box protein [Capsaspora owczarzaki ATCC 30864]
          Length = 707

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 192/348 (55%), Gaps = 10/348 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+++  + ++T +Q   + P +  KD+L +A+TGSGKT+AF L  A  L+++ + F P 
Sbjct: 224 QAIADMKFTHMTEIQRRCIPPLVAGKDLLAAAKTGSGKTLAF-LIPAIELMSQLN-FMPR 281

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q       L         + +GG +  +E   L  G +I++ TP
Sbjct: 282 NGTGVIIISPTRELSLQTYGVCRDLLRHHNHTFGLVMGGANRKQEAEKLCKGINILIATP 341

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLMFSATI 189
           GRL DH++  KG N  HL+ +++DEAD +L++GF ++++ I+   PK  +RR ++FSAT 
Sbjct: 342 GRLLDHLQNTKGFNFKHLEMLIIDEADRILEIGFEEEMKQIIRLLPKDSQRRTVLFSATQ 401

Query: 190 SPAITTLAK-NYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +  +  LA+ + +K+ + + +  E        ++   V+     R   +   L+ +  K 
Sbjct: 402 TRNVEDLARISLKKEPLYIGVDDEKIVATAEGLEQGYVVCKAGQRFLLLFTFLKKNQNKK 461

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF S+  SV   +++L      V+ + G   QQ+R+N      + +  + + TDVAAR
Sbjct: 462 VMVFFSSCNSVKFHSELLNYIDLPVLEIHGRQKQQKRTNTFFEFCNAKTGILLCTDVAAR 521

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           G+D+P ++ ++  +   +P+  +HR GRT R   G     +F++P+ +
Sbjct: 522 GLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGVNGSGHALLFLLPEEL 569


>gi|255942321|ref|XP_002561929.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586662|emb|CAP94307.1| Pc18g00830 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 520

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 182/347 (52%), Gaps = 29/347 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL---ALAI 80
           T++Q+A +   L+ KD +  ++TGSGKT+AF + +             A  P    AL +
Sbjct: 114 TAIQKACIPEILKGKDCIGGSRTGSGKTMAFAVPIMQQW---------ARNPFGIYALVL 164

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA+Q+  +   + A   +   + +GG+ + ++  +L +  H+V+ TPGRL DHI+
Sbjct: 165 TPTRELALQIYEQFRAVSAPQNMKPILVVGGMDMRQQAIELASRPHVVIATPGRLADHIK 224

Query: 141 GKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPK--KRRMLMFSATISP 191
             G +    +  +K VVLDEAD +L  G      D+E  L + P   +R+ L+F+AT++ 
Sbjct: 225 TSGEDTVAGLRRVKMVVLDEADRLLASGPGSMLPDVETCLGALPPSAERQTLLFTATMTA 284

Query: 192 AITTL----AKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNIL--RYHG 243
            +  L    A   +       I +EN+      +    + V ++ R+  +  +L    + 
Sbjct: 285 EVRALKSMPAAGNKPPIFMTEIGTENQGKIPPTLKQTYLKVPMTHREAFLHALLSTEVNV 344

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVFC+   +     + L     ++ +L   L Q ER+  L   R   ARV +ATDV
Sbjct: 345 TKPVIVFCNHTKTCDLLERTLRRLGHRITSLHSILPQSERTANLARFRATAARVLVATDV 404

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           A+RG+D+P +ELVI+ E+  NP++ +HR GRT RAGR G +  +I Q
Sbjct: 405 ASRGLDIPSVELVINYEVPRNPDDYVHRVGRTARAGRSGEATTLIGQ 451


>gi|226468132|emb|CAX76293.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +   ++         AL
Sbjct: 38  GYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQ------AL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+   ++ + +   V    CIGG  +  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  VLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQGQHVVVGTPGRVIDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  S++K  VLDEAD+ML  GF   I+ I    P+  ++++ SAT+   + T+A+
Sbjct: 152 MNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIAR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
              +D V++ I  E      I    + V+  + +   ++++ +       ++F ++    
Sbjct: 212 GIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKA 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           S  ++ LA   FQV  ++ ++ Q++R   ++  R GR+R+ ++TDV ARGID+  + LV+
Sbjct: 272 SYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLSTDVLARGIDVQQVSLVV 331

Query: 318 HAELSSNPENLLH 330
           + +L  + E  +H
Sbjct: 332 NYDLPGDHETYIH 344


>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
 gi|187022048|emb|CAP38818.1| hypothetical protein CBG_22166 [Caenorhabditis briggsae AF16]
          Length = 753

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 187/371 (50%), Gaps = 33/371 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A +  GY + T +Q+A +   L  KD+   A TG+GKT AF L +   ++  
Sbjct: 149 NLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILERMIY- 207

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   L++G 
Sbjct: 208 --RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGP 265

Query: 126 HIVVGTPGRLCDHIRGK-GLNIS----------------------HLKAVVLDEADEMLD 162
            +VV TPGRL DH+      N++                      +LK +VLDEAD ML+
Sbjct: 266 DVVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEADRMLE 325

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             FRD +  ++    + R+ L+FSAT++  I  LA    K  V++ I +EN   + +  R
Sbjct: 326 EAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFI-NEN-TDTALKLR 383

Query: 223 AVLVAL-----SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
              + +     +DR++ +  ++      N IVF  T+    R   +L     +V  +   
Sbjct: 384 QEFIRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSS 443

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           L+Q +R  +L   + G   V ++TD+A+RG+D+  ++ VI+  +  + +  +HR GRT R
Sbjct: 444 LTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTAR 503

Query: 338 AGRKGMSVFVI 348
           AG+ G S+ ++
Sbjct: 504 AGKAGRSISLV 514


>gi|73966205|ref|XP_864504.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 4 [Canis familiaris]
          Length = 351

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 160/297 (53%), Gaps = 8/297 (2%)

Query: 36  REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
           R  DV+  AQ+G+GKT  F +++   +  E D      A  AL +APTRELA Q+ + + 
Sbjct: 13  RGYDVIAQAQSGTGKTATFAISILQQI--ELD----LKATQALVLAPTRELAQQIQKVVM 66

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
            L    G     CIGG +V  E + LQ  A HI+VGTPGR+ D +  + L+  ++K  VL
Sbjct: 67  ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 126

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEADEML  GF+D I  I        ++++ SAT+   +  + K + +D +R+ +  E  
Sbjct: 127 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEEL 186

Query: 215 QHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               I    + V   + + + + ++        A++F +TR  V   T+ +    F V A
Sbjct: 187 TLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSA 246

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           + G++ Q+ER   ++  R G +RV I TD+ ARGID+  + LVI+ +L +N EN +H
Sbjct: 247 MHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 303


>gi|71418407|ref|XP_810839.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70875435|gb|EAN88988.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 895

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 184/357 (51%), Gaps = 13/357 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q     L   GY  +T +Q   L+  L   DVL +A+TGSGKT+ F + +   
Sbjct: 119 FNQLPLSQRTQLGLERGGYKRMTPIQSDALHLALAGYDVLGAAKTGSGKTLCFVVPVLER 178

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  ++  A    AL ++PTRELA+Q+ + L+ +  K     A+  GG  V  ER+ L
Sbjct: 179 LFVE--QWDTAMGVGALVLSPTRELALQIFKVLQLVGYKHTHSAALLTGGRDVEEERKRL 236

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                ++VGTPGR+  H+     L   +++  V+DEAD +LD+GFRD I  I+   P  R
Sbjct: 237 A-AISVIVGTPGRVLHHLEDDADLVTDNMQLFVMDEADRLLDMGFRDAICGIMRHLPTAR 295

Query: 181 RMLMFSATISPAITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT +  +  LA+   ++   V  + ++     + +    ++V L  + +A++  
Sbjct: 296 QTLLFSATQTTDVQMLAQMSLRNQRYVTTHASTAAPTPATLCQNFIVVELHRKLDALLMF 355

Query: 239 LRYHGAKNAIVFCST----RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           L+ H     +VF ST    R     F+K+L +     + L+ ++ Q  R          +
Sbjct: 356 LKRHPNDKTVVFVSTCNQVRYMYLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCK 415

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           A V   TD+AARG+D P +   +  +   + +  +HR+GRT RAG +G+S +F+ PQ
Sbjct: 416 AAVLFCTDIAARGLDFPLVHWAVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPQ 472


>gi|313219016|emb|CBY43265.1| unnamed protein product [Oikopleura dioica]
          Length = 393

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/276 (34%), Positives = 149/276 (53%), Gaps = 5/276 (1%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           PLAL ++PTRELA Q+  E      ++ V   V  GG  V  + RDL  G H++V TPGR
Sbjct: 10  PLALVLSPTRELASQIYEESRKFAYRSQVRPCVIYGGADVGAQMRDLDRGCHLLVATPGR 69

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSATIS 190
           L D +    + + + + + LDEAD MLD+GF   I  I+  D+ P K  R+ LMFSAT  
Sbjct: 70  LADFLDRGKIGLDYCRYLCLDEADRMLDMGFEPQIRRIVEKDAMPAKGDRQTLMFSATFP 129

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-IV 249
             I  LA+++  + + + +        +I  + V V  +D+ N + ++L         +V
Sbjct: 130 KEIQHLARDFLDNYIFLTVGRVGSTSQNITQKVVWVDENDKINFLTDLLTATDQNTCFVV 189

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+         L +  F+   + G+ +Q+ER  AL+  R+    V +AT VAARG+D
Sbjct: 190 FTETKKGADYLDNYLYDRGFRSTCIHGDRNQREREGALKSFREAVTPVLVATAVAARGLD 249

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +P++  VI+ +L S+ +  +HR GRTGR G  G++ 
Sbjct: 250 IPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIGLAT 285


>gi|169596224|ref|XP_001791536.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
 gi|111071244|gb|EAT92364.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
          Length = 598

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 180/359 (50%), Gaps = 26/359 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---- 65
           V+ E +    Y   T +Q   +   L  +DV+  AQTGSGKT AF + + S L+ +    
Sbjct: 130 VMSENIKLCQYRFPTPIQSYCIPAVLSGRDVIGVAQTGSGKTAAFLIPILSRLMGKARQL 189

Query: 66  ------NDRFSPAS-----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
                   R++P +      PL L + PTRELA Q+  E   L  +T +   V  GG   
Sbjct: 190 AAPRPNPARYNPQTDRVRAEPLVLVVCPTRELACQIFDEARRLCYRTMLRPCVIYGGAPS 249

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +R  L+ G  I++ TPGRL D +    L ++  LK  ++DEADE+L  G+ + +E + 
Sbjct: 250 RNQREQLEMGCDILIATPGRLMDFMGNISLLSLKRLKYTIIDEADELLSNGWEEIMEKLF 309

Query: 174 D-----SSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA 227
                 +S      LMFSAT       LAK Y ++DAVR+ +      H +I  + V VA
Sbjct: 310 QGGGDINSDGDHTYLMFSATFPKEARRLAKEYMEEDAVRIKVGRVGSTHENIKQQIVYVA 369

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S+++ A+ +++        +VF +++         +      V ++  + +Q+ER +AL
Sbjct: 370 ESEKNQALFDLIFSEEPGRILVFTNSKFKCDTVDDFIYNKGLPVTSMHSDRTQREREDAL 429

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE----NLLHRSGRTGRAGRKG 342
           +  R GR  + +AT V+ARG+D+ +++ VI+ +L S         +HR GRT R G +G
Sbjct: 430 RSFRTGRCPIMVATGVSARGLDVANIKHVINYDLPSTQHGGITEYIHRIGRTARIGNEG 488


>gi|148543767|ref|YP_001271137.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184153173|ref|YP_001841514.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148530801|gb|ABQ82800.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224517|dbj|BAG25034.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 457

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 172/335 (51%), Gaps = 9/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + S +  E+       
Sbjct: 18  AIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKIKPEDQTVQ--- 74

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
              A+   P+RELA Q+    + L  YA   + +   +GG     +   L +    +V+G
Sbjct: 75  ---AVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    P   +M++FSATI 
Sbjct: 132 TPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPNDLQMMVFSATIP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y ++ V   I +E   + D+D   +     DR+  I  +L       A+VF
Sbjct: 192 QKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLLTLGEPYLALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+    + T+ L     +V  + G L  + R   ++ +RD   +  +ATD+AARGID+
Sbjct: 252 ANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L ++ E  +HR GRTGR G KG ++
Sbjct: 312 DGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAI 346


>gi|158298027|ref|XP_318117.4| AGAP004711-PA [Anopheles gambiae str. PEST]
 gi|157014611|gb|EAA13218.5| AGAP004711-PA [Anopheles gambiae str. PEST]
          Length = 613

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 181/358 (50%), Gaps = 23/358 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL++R     + +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 180 KLPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIMFCLEQ 239

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHR 116
             R  F     P  L I P+RELA Q    +++ Y +         +   + IGGV V+ 
Sbjct: 240 ELRLPFIKREGPYGLIICPSRELAKQTHDIIQY-YCRHLQEAGMPEIRTVLAIGGVPVND 298

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               +Q GAHI+V TPGRL D +  K + +   + + +DEAD M+D+GF +D+  I    
Sbjct: 299 AIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTIFSYF 358

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRD 232
             +R+ L+FSAT+   I   AK+     V +N+    A+      D++Y         ++
Sbjct: 359 KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEY-------VKQE 411

Query: 233 NAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +V +L          ++F   +  V    + L     + VA+ G   Q+ER  +++  
Sbjct: 412 AKVVYLLECLQKTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESF 471

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           R+    V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G KG++   I
Sbjct: 472 RNQEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFI 529


>gi|322493216|emb|CBZ28501.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 894

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 187/343 (54%), Gaps = 12/343 (3%)

Query: 17  ERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ERG Y  LT +Q+  L+  L   DVL +A+TGSGKT+ F + +   L  E+  +S     
Sbjct: 91  ERGHYTILTPIQKGSLHLALAGFDVLGAAKTGSGKTLCFVIPVLECLYREH--WSSDMGV 148

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L +   I+VGTPGR+
Sbjct: 149 GALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRL-HAISIIVGTPGRI 207

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             H++    L + +++   +DEAD +LD+GFR+ I  IL   P +R+ L+FSAT +  + 
Sbjct: 208 LHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILAYLPPQRQSLLFSATQTTDVQ 267

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            LA+   K+   V++ +     + +      V+V L  + +A++  L+ H     +VF S
Sbjct: 268 MLAQMSLKNPRYVSMQAITAAPTPMTLCQNFVVVELHKKLDALLMFLKRHPNDKIVVFVS 327

Query: 253 TRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T   V      F+K+L +     + L+ ++ Q  R          ++ V   TDVA+RG+
Sbjct: 328 TCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGL 387

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           D P +  V+  +   + +  +HR+GRT RAG +G+S +F+ P+
Sbjct: 388 DFPLVHWVVQYDCPDSAQTYIHRAGRTARAGARGVSLLFLTPR 430


>gi|227530293|ref|ZP_03960342.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227349770|gb|EEJ40061.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 434

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 173/333 (51%), Gaps = 29/333 (8%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QEA+  P   +K +L  A TGSGKT+AF L L   ++       P +    L +AP+
Sbjct: 17  TEIQEAVAKPLAEDKSILGIAPTGSGKTLAFTLPLLPKIM-------PGAGTQLLVLAPS 69

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           +ELA+Q  R +       GV V    GG ++ R+   L+    +VVGTPGR+   +  + 
Sbjct: 70  QELAIQTTRVMREWANIIGVKVLALTGGANLRRQVMKLRKHPDVVVGTPGRVLHMLDNRH 129

Query: 144 LNISHLKAVVLDEADEMLDLGFRDD----IEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           L + HL+ +V+DEAD++L    RDD    +E I  ++P   ++  FSAT SP    L+  
Sbjct: 130 LKLGHLQTMVIDEADDLL----RDDTLAVVEDIERATPLSAQLAFFSATKSPVFKQLSVM 185

Query: 200 YQKDAVRVNIASE-----NRQHSDIDYR--AVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           + +D + +++        N +H  ID R  A   A+  R  +I +       +  + F S
Sbjct: 186 FGRDILTLDVTDSDHTRGNVRHGYIDARTNAQKTAVLRRLTSIKDF------RGLVFFNS 239

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR      +++  EH+  +  L G   Q +R  A++M R  + ++ + TDVAARGID+P 
Sbjct: 240 TRTLHYAASRLRHEHM-TIGTLGGRQKQTQREKAMRMFRKRQIKLLLTTDVAARGIDIPK 298

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           L  VI+ +L +     +HR GRTGR G  G+ +
Sbjct: 299 LPAVINFDLPTETNTYIHRVGRTGRQGEPGLVI 331


>gi|91218310|ref|ZP_01255255.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755]
 gi|91183519|gb|EAS69917.1| ATP-independent RNA helicase [Psychroflexus torquis ATCC 700755]
          Length = 443

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 173/309 (55%), Gaps = 11/309 (3%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
           + ++ + TG+GKT+AF L L + L    D  SP      L + P+RELA+Q+ + +  + 
Sbjct: 36  NTILLSPTGTGKTLAFSLPLLTIL----DPESPDVQ--VLILVPSRELAIQIEQVIRTM- 88

Query: 99  AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
             +G  V    GG  V +++ ++++   I++GTPGR+ DH   +  + + ++ ++LDE D
Sbjct: 89  -GSGYKVNAVYGGRPVSKDKIEIKHNPAILIGTPGRILDHFNSERFSKTSIQTLILDEFD 147

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           + L++GF ++++ I+   P   + ++ SAT S +I    +   K ++ VN  ++ +  S 
Sbjct: 148 KSLEVGFEEEMKAIISQLPNLNKRVLTSATQSLSIPGFVR-LDKPSI-VNYLNK-KTPSK 204

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +  + V+     +   +V+++ + G    IVFC+ R S+   +  L          SG +
Sbjct: 205 LTIKTVISPSQSKLKTLVDLVHHLGNAPGIVFCNLRDSIDEVSSYLNRQNISHACFSGVM 264

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL   R+G +++ +ATD+AARGID+P+L+ +IH EL  + E  +HR+GRT R 
Sbjct: 265 EQKDRERALIKFRNGSSQILVATDLAARGIDIPELKFIIHYELPRHEEEFIHRNGRTARV 324

Query: 339 GRKGMSVFV 347
             KG +  +
Sbjct: 325 NSKGTAYIL 333


>gi|150016694|ref|YP_001308948.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903159|gb|ABR33992.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 402

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 188/361 (52%), Gaps = 12/361 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E L ++G    TS+Q + + P L  KD++  A TGSGKT+A+ L L   +   
Sbjct: 9   NLNSSIIEGLQKQGINIPTSIQSSSILPALEGKDIIGEAFTGSGKTLAYLLPLFHKIDTS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
                       L +APT ELA Q+  +++ L   +   +     IG V+++ + + L+ 
Sbjct: 69  KREMQ------GLILAPTHELAKQIEDQIKLLAENSSFPITSLSIIGDVNINNQIKKLKE 122

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD    +  + I+ S+ + R++
Sbjct: 123 IKPHIIVGSTGRILDLIRKKKITAHTIKTIVIDEGDNLLDPKRSNVTKDIVKSTMRDRQL 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSA+I P     AK+  K+ + +    +   + +I++  +L    D+   +  +L   
Sbjct: 183 MLFSASIKPETLETAKSLMKEPIIIKSEDKPLINPNIEHMFILCERRDKFETLRKVLVAV 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AI+F +    +   T  L  H     A++G++S+++R  A++  R G+ ++ +++D
Sbjct: 243 KPEKAIIFVNNNEDIELTTAKLNYHSKDCFAMTGKISKEDRKLAIESFRTGKIKILVSSD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERL 359
           V ARG+D+ D+  V H +L       LHRSGRT R    G S+ ++     N+ ++ ER 
Sbjct: 303 VTARGLDVADITHVFHLDLPLKLNEYLHRSGRTARGNAHGTSICILTVQQLNIIKKYERE 362

Query: 360 F 360
           F
Sbjct: 363 F 363


>gi|301300913|ref|ZP_07207085.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851512|gb|EFK79224.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 440

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ- 122
            D         A+   P+RELA Q+    + L  ++   + +   +GG    R+   L+ 
Sbjct: 68  KDEVQ------AVITTPSRELAYQIYEAAKQLAKFSSENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   +     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAI 344


>gi|56756691|gb|AAW26518.1| SJCHGC06278 protein [Schistosoma japonicum]
 gi|226468130|emb|CAX76292.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
 gi|226468134|emb|CAX76294.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
 gi|226468136|emb|CAX76295.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
 gi|226468138|emb|CAX76296.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
 gi|226472622|emb|CAX70997.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 169/313 (53%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   +   ++         AL
Sbjct: 38  GYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQ------AL 91

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+   ++ + +   V    CIGG  +  +   LQ G H+VVGTPGR+ D 
Sbjct: 92  VLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACLQQGQHVVVGTPGRVIDM 151

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +    L  S++K  VLDEAD+ML  GF   I+ I    P+  ++++ SAT+   + T+A+
Sbjct: 152 MNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIAR 211

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
              +D V++ I  E      I    + V+  + +   ++++ +       ++F ++    
Sbjct: 212 GIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKA 271

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           S  ++ LA   FQV  ++ ++ Q++R   ++  R GR+R+ ++TDV ARGID+  + LV+
Sbjct: 272 SYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLSTDVLARGIDVQQVSLVV 331

Query: 318 HAELSSNPENLLH 330
           + +L  + E  +H
Sbjct: 332 NYDLPGDRETYIH 344


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 188/371 (50%), Gaps = 16/371 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +  +     P+  P+ +
Sbjct: 495 GYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHI-KDQRPVEPSEGPVGI 553

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+ RE+       G+  A   GG  +  +  +++  A IVV TPGRL D 
Sbjct: 554 IMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTADIVVATPGRLIDL 613

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +    G+  N+  +  +VLDEAD M D+GF   +  IL++    R+ ++FSAT    + +
Sbjct: 614 LTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQTVLFSATFPKQMES 673

Query: 196 LAKNYQKD-AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNA-- 247
           LA+   K+  + + +   +   ++I+    +V +   D     +L      Y+  K+A  
Sbjct: 674 LARKVLKNKPLEITVGGRSVVAAEIEQ---IVEVRSEDTKFHRLLEILGELYNREKDART 730

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F   + +     K L    +  ++L G   Q +R   +   + G   +  AT VAARG
Sbjct: 731 LIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNVPIVTATSVAARG 790

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L+LVI+ ++ ++ E+ +HR+GRTGRAG+KG  +  I     R A  +      S 
Sbjct: 791 LDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQDRYARDIIAALKASA 850

Query: 368 VWEPAPSVEAI 378
              P P +EA+
Sbjct: 851 AHVP-PELEAM 860


>gi|296191070|ref|XP_002806581.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX31-like [Callithrix jacchus]
          Length = 857

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 184/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P  L + 
Sbjct: 259 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKSKIQRSDGPYVLVLV 318

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 319 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 378

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 379 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 438

Query: 197 AKNYQKDAVRVNIASENRQH-----------------SDIDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  E+                     ++D  A+  +L      + + L
Sbjct: 439 ADISLHDPVSISVLDESHDQLNPKDKVVQEVCPPPAGDELDSFAIPESLEQHVTVVPSKL 498

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 499 RLVCLAAFILQKCKFEKDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASTR 558

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 559 LKFLRLHGNMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 618

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 619 IHRIGRTARIGCHGSSLLIL 638


>gi|222618647|gb|EEE54779.1| hypothetical protein OsJ_02176 [Oryza sativa Japonica Group]
          Length = 429

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 184/338 (54%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 62  AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 114

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             + AL +  TRELA Q+  E E        V VAV  GGV + + +  L+N   HIVVG
Sbjct: 115 GQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVG 174

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+MLD L  R D++ I   +P  ++++MFSAT+
Sbjct: 175 TPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATL 234

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L        
Sbjct: 235 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH-YIKLSEAEKNRKLNDLLDALDFNQV 293

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD+  RG
Sbjct: 294 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 353

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + ++ LHR GR GR G KG+++
Sbjct: 354 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAI 391


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 183/365 (50%), Gaps = 17/365 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA----- 74
           Y   T VQ+  +      +D++  AQTGSGKT  F   + S L        P        
Sbjct: 202 YSTPTPVQKYSIPIVGAGRDLMGCAQTGSGKTGGFLFPILSALFTHGPPPMPPQPPMYGR 261

Query: 75  ----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P  L +APTREL  Q+  E      ++ V  AV  GG  +  + R ++ G  ++  
Sbjct: 262 QKAFPSVLILAPTRELVSQIHEEARKFTYRSWVRPAVVYGGAEMGAQLRQIERGCDMLSA 321

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK--KRRMLMFS 186
           TPGRL D I    +++++++ +VLDEAD MLD+GF   I  I+  +  P    R+ LMFS
Sbjct: 322 TPGRLVDLIERGRISLANVRFLVLDEADRMLDMGFEPQIRRIVLGEDMPGVMDRQTLMFS 381

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LAK++ K+ V +++        +I  +   V   D+ + ++++L       
Sbjct: 382 ATFPQNIQMLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDRDKQSMLLDVLAAMPTSG 441

Query: 247 -AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+      +  L        ++ G+ +Q+ER  AL + R GR  + +AT VAA
Sbjct: 442 LTLIFVETKRMADMLSDFLIYSNIAATSIHGDRTQREREYALDLFRSGRTPILVATAVAA 501

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           RG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G +        +N+ R   +L +E
Sbjct: 502 RGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNIGHATAFFNRNNRNIVRDLVKLLQE 561

Query: 363 ANVSV 367
           AN  V
Sbjct: 562 ANQEV 566


>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
 gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
          Length = 430

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/350 (32%), Positives = 179/350 (51%), Gaps = 13/350 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+    +  
Sbjct: 14  DATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQKRGHTGF 73

Query: 73  SAPLA-LAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             PLA L + PTRELA+QV   L  +    +      V  GGVS++ +   L+  A  +V
Sbjct: 74  VRPLATLILVPTRELALQVHESLNDITRQLREQPRSRVVYGGVSINPQMMQLRGSADFLV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L+ SAT 
Sbjct: 134 ATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALLPAKRQTLLLSATF 193

Query: 190 SPAITTLAKNYQKDAVRVNI-ASENRQHS----DIDYRAVLVALSDRDNAIVNILR---- 240
              +  LA     D VRV + A +  +HS    +I  RA+ V    R   +  +++    
Sbjct: 194 PQNVEALATRLLHDPVRVQVDADQAAEHSTSPENISQRAIAVDGPRRTQLLRQLVKQGEN 253

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF + R +       L +         G++SQ  R + L   +  R ++ I 
Sbjct: 254 QPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVLDQFKAKRWQLLIT 313

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
           TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++ FV P
Sbjct: 314 TDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSP 363


>gi|255576631|ref|XP_002529205.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531323|gb|EEF33161.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 590

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/477 (27%), Positives = 238/477 (49%), Gaps = 38/477 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+  LT +Q   + P L  KDVL +A+TGSGKT+AF   + +  L  N  F+P 
Sbjct: 117 KAIQEMGFQYLTQIQARAIPPLLVGKDVLGAARTGSGKTLAF--LIPAVELLYNVHFAPR 174

Query: 73  SAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +    + I PTRELA+Q   V ++L   +++T   + + IGG +   E   +  G +++V
Sbjct: 175 NGTGVVVICPTRELAIQTHAVAKDLLKYHSQT---LGLVIGGSARKGEAERIVKGVNLLV 231

Query: 130 GTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            TPGRL DH++  KG    +LK +++DEAD +L+  F ++++ I+   PK R+  +FSAT
Sbjct: 232 ATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSAT 291

Query: 189 ISPAITTLAK-NYQKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAK 245
            +  +  LA+ ++Q   V +++     + ++  +     +V  + R   + + L+ + +K
Sbjct: 292 QTKKVEDLARLSFQITPVYIDVDDGRTKVTNEGLQQGYCVVHSAKRFILLYSFLKRNLSK 351

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  SV   +++L     +   + G+  QQ+R+            + + TDVAA
Sbjct: 352 KVMVFFSSCNSVKFHSELLRYIQVECFDIHGKQKQQKRTTTFFDFCKAEKGILLCTDVAA 411

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRRAERLFREA 363
           RG+D+P ++ ++  +    P+  +HR GRT  G  G+    +F+IP+ +Q    R  + A
Sbjct: 412 RGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFL--RYLKAA 469

Query: 364 NVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            V V  +E      A  +   ++++ +  +L+    D  +   +    H  + I      
Sbjct: 470 KVPVKEYEFDVKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSMKDI----FN 525

Query: 423 IHRAGL----------CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +HR  L          C P+    +++ S   +FR      K   GSR+ F  S+ +
Sbjct: 526 VHRLDLQAVAASFCFSCPPK--VNLNIDSNASKFRK-----KAHKGSRNGFSESNPY 575


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/361 (32%), Positives = 175/361 (48%), Gaps = 57/361 (15%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---AENDRFSPAS--- 73
           Y   T VQ+  +   +  +D++  AQTGSGKT AF + + + +     +N+R  P S   
Sbjct: 261 YDKPTPVQKYAIPIIMSRRDLMACAQTGSGKTAAFLVPILNQMYQRGPQNNR--PYSHRK 318

Query: 74  -APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+ L +APTRELA Q+  E      ++ +   V  GG  +  + R+L+ G H++V TP
Sbjct: 319 QYPMGLVLAPTRELATQIYDEARKFSYRSRLRPCVVYGGSYLQDQFRELEKGCHLLVATP 378

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PK--KRRMLMFSATI 189
           GRL D +    + + + K +VLDEAD MLD+GF   I  I++   P+  +R+ LMFSAT 
Sbjct: 379 GRLADMLDRDKIGLENCKFLVLDEADRMLDMGFEPQIRRIVEKDMPRTGERQTLMFSATF 438

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-- 247
              I                          D R+ L+ L       +N  RY     +  
Sbjct: 439 PDVIQA------------------------DKRSFLLDL-------LNATRYKNGTESLT 467

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  TR       + L    + V  + GE SQ+ER +AL+  R G   + +AT VAARG
Sbjct: 468 LVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRFRSGETPILVATAVAARG 527

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  VI+ +L S+ E  +HR GRTGR G  G+            A   F E N ++
Sbjct: 528 LDISHVTHVINFDLPSDIEEYVHRIGRTGRMGNLGV------------ATSFFNEKNRNI 575

Query: 368 V 368
           V
Sbjct: 576 V 576


>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
          Length = 691

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 184/357 (51%), Gaps = 32/357 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S+  +V+ T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 143 NLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLL-- 200

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P   P     L + PTREL VQV +  + L   + + + + +GG+ +  +   L+
Sbjct: 201 ---YRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILR 257

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH++      +  ++ ++LDEAD MLD  F + ++ I+    + R+
Sbjct: 258 KNPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQ 317

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVAL 228
            ++FSAT++  + +LA       VR+ + S               RQ  + D  A+L AL
Sbjct: 318 TMLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAAL 377

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                 +    R H     +VF  T+    R   +L     +V  L G L+Q +R +ALQ
Sbjct: 378 ------VCRTFREH----CMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQ 427

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             ++ +  V +ATDVAARG+D+  ++ VI+  + +  E+ +HR GRT RAGR G+SV
Sbjct: 428 KFKETQIDVLVATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSV 484


>gi|74147664|dbj|BAE38708.1| unnamed protein product [Mus musculus]
          Length = 687

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 44/385 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 112 PHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQALTS 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 172 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 231

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K L+ + ++ +++DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 232 ILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILNAVNAECQKRQN 291

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-----------------IDYRAVL 225
           ++ SAT++  +T L      + V +++  +N    +                 +D   VL
Sbjct: 292 VLLSATLTEGVTRLVDISLHNPVSISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVL 351

Query: 226 VALSDR----DNAIVNILRYHGAKNAIVFCSTRASV----SRFTKVL--------AEHL- 268
           V    R       I+   ++   +  IVF S+   V    S F   L        +EHL 
Sbjct: 352 VPSKLRLVCLAAFILQKCKFEKNQKMIVFFSSCELVEFHYSLFLHTLLCHSGTPTSEHLP 411

Query: 269 -----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
                 + + L G + Q+ER++           V + TDVA+RG+DLP +  ++     S
Sbjct: 412 SASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPS 471

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +P   +HR GRT R G  G S+ ++
Sbjct: 472 SPAEYIHRIGRTARIGCHGSSLLIL 496


>gi|30022365|ref|NP_833996.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29897922|gb|AAP11197.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 436

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 12/340 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+       LL   +R + +
Sbjct: 17  DAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAY-------LLPTLNRINAS 69

Query: 73  SAPLALAI-APTRELAVQVGRE---LEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHI 127
              + L I APTRELA Q+  E   L    A+  ++ A C IGG    R    L+   HI
Sbjct: 70  REEVQLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +ML+FSA
Sbjct: 130 VVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQMLVFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L       A
Sbjct: 190 TIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQFKPYLA 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +ATD+AARG
Sbjct: 250 VVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ID+  +  VI+ +  S+ +  +HR  RT RAG  G++V +
Sbjct: 310 IDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTI 349


>gi|260889521|ref|ZP_05900784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Leptotrichia
           hofstadii F0254]
 gi|260860932|gb|EEX75432.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Leptotrichia
           hofstadii F0254]
          Length = 290

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 153/279 (54%), Gaps = 8/279 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLV-SAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ALS++G+   + +Q+ ++   L+E+  L+  AQTG+GKT AFG+ +  T+ A+       
Sbjct: 16  ALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIPILETIEADK------ 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL +APTRELA QV  E+  L     + V    GG S+  + + L++G  IVVGTP
Sbjct: 70  -TVRALILAPTRELANQVADEIYSLKGAKDLKVLAVYGGASIENQIKKLKSGVDIVVGTP 128

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ D +R K L + +L   VLDEADEML++GF +DIE IL+ +  +++ML FSATI  A
Sbjct: 129 GRVMDLMRKKVLKVDNLDYFVLDEADEMLNMGFLEDIEAILEKTNDEKKMLFFSATIPKA 188

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  +AK +  +   + +  +    +  +     V   D+  A+  +L Y      IVFC 
Sbjct: 189 IMAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQDFYGIVFCR 248

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           T++ V   T  L    +    + G+++Q  R  AL + +
Sbjct: 249 TKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFK 287


>gi|123406720|ref|XP_001302841.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121884169|gb|EAX89911.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 633

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 193/365 (52%), Gaps = 14/365 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   ++L +  +  ++ +Q+  L   L  +D++ +A+TGSGKT+AF + +  +
Sbjct: 51  FSSLPILESTKKSLEKSKFTKMSPIQKQTLLYTLCGRDIIGAAETGSGKTLAFCIPIVES 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +FS  S   A+ I+PTR+LA Q    L+ L   T +   +  GG+    E+  L
Sbjct: 111 L--KKAKFSKMSGIGAIIISPTRDLAAQTFDVLKKLIKDTDISAGLITGGMDFEMEQEGL 168

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++ T GRL +H+      N  HL+ +VLDEAD++++  F  D++ ++   P  R
Sbjct: 169 SR-LNIIICTMGRLKEHMETTSTFNADHLQILVLDEADKLMNKEFIRDLKHVIADLPDTR 227

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIVN 237
           + ++F+AT + AI  ++K    +  RVN+  E       S I + A+ V LS++ N + +
Sbjct: 228 QTMLFTATATKAIKDISKLSLSNPARVNLTEERSTVMPESLIQFYAI-VNLSEKWNTLFS 286

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGR 294
            L+ H     IVF  T   V RF     +HL     ++ L+G+ +   R + ++  +  +
Sbjct: 287 FLKMHLNDKIIVFMETVKMV-RFAYEAFKHLRPGLPILHLTGKQNSNLRFDVIREFKSQK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                 TDVAARG+D PD+  V+  +  S+ +  +HR+GRT R  + G S+  +  + + 
Sbjct: 346 RCAIFTTDVAARGLDFPDITWVVQMDCPSSTDTYIHRAGRTARFHKMGKSIVFLTPSEKM 405

Query: 355 RAERL 359
             E+L
Sbjct: 406 MVEKL 410


>gi|116334161|ref|YP_795688.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099508|gb|ABJ64657.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 441

 Score =  162 bits (411), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 176/350 (50%), Gaps = 8/350 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q A+  P   + +VL  A TGSGKTVAF L   + LL       P      +
Sbjct: 13  GYREPTAIQTAVYEPLASDHNVLGLAPTGSGKTVAFTLPALANLL-------PGDGTQLI 65

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + P++ELA+Q  R +        + V    GG +V R+   L+    ++VGTPGR+ + 
Sbjct: 66  VLEPSQELAIQTSRVMRDWAKLLDLQVLALTGGANVKRQTERLKKRPEVIVGTPGRVLNL 125

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L +  +  +++DEAD++L     D +  I  ++P   ++  FSAT +P +  L +
Sbjct: 126 VTDRKLKLHLVSLLIVDEADDLLTGETLDTVRSIAQAAPADVQLGFFSATDTPILHELDQ 185

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            + +   R+++  +++    + +  + V +  RD  +  +L     +  + F        
Sbjct: 186 WFGQTVERIDVREQDQTQGVVRHGLLQVGMGKRDQMLKRLLALPNFRALVFFKQASTLRH 245

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             TK   EH+    +L+ +L Q +R  ALQ  R GR R+ + TDVAARG+D+P L  VI+
Sbjct: 246 TATKFYHEHV-SAASLTSDLRQVQREKALQDFRQGRIRLLLTTDVAARGLDIPKLPAVIN 304

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            +L +     +HR GRTGR G  G  + +   +  R  ++L +E +  +V
Sbjct: 305 YDLPTQVNEYVHRVGRTGRMGEPGQVISLGDDHDLRDLKKLLKETDYELV 354


>gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa Japonica Group]
 gi|113532828|dbj|BAF05211.1| Os01g0549700 [Oryza sativa Japonica Group]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 184/338 (54%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 128 AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 180

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             + AL +  TRELA Q+  E E        V VAV  GGV + + +  L+N   HIVVG
Sbjct: 181 GQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVG 240

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+MLD L  R D++ I   +P  ++++MFSAT+
Sbjct: 241 TPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATL 300

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L        
Sbjct: 301 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH-YIKLSEAEKNRKLNDLLDALDFNQV 359

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD+  RG
Sbjct: 360 VIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRG 419

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + ++ LHR GR GR G KG+++
Sbjct: 420 IDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAI 457


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 171/331 (51%), Gaps = 3/331 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +       P+A+ 
Sbjct: 121 YTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQKE-LEAGEGPIAVI 179

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 180 VCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 239

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  ++  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 240 KKKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARD 299

Query: 200 YQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRASV 257
              D +RV        + D+     +L++ SD+ + +   ++ +  + + ++F + + + 
Sbjct: 300 ILVDPIRVVQGDIGEANEDVTQVVELLLSGSDKWSWLTRRLVEFTSSGSVLIFVTKKTNS 359

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  + +  L G++ Q ER+  +   +     + +ATDVAARG+D+P +  V+
Sbjct: 360 EELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVAARGLDIPSIRTVV 419

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +++ + +   HR GRTGRAG KG++  ++
Sbjct: 420 NYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 450


>gi|328709089|ref|XP_003243867.1| PREDICTED: probable ATP-dependent RNA helicase pitchoune-like
           [Acyrthosiphon pisum]
          Length = 511

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + +++ G+  +T +Q   + P L  +D++ +A+TGSGKT+AF   + +  L    +F P 
Sbjct: 36  KGIADMGFTVMTEIQAKTIPPLLEGRDLVGAAKTGSGKTLAF--LIPAVELIYKLKFMPR 93

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L         + +GG +   E   L  G +IVV TP
Sbjct: 94  NGTGCIIISPTRELSMQTYGVLKELMKHHHHTYGLMMGGANRQTEATKLSKGINIVVATP 153

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS- 190
           GRL DH++        +L+ +++DEAD +LD+GF ++I+ I++  PK+R+ +MFSAT + 
Sbjct: 154 GRLLDHLQNSPDFLYKNLQCLIIDEADRILDIGFEEEIKQIINLLPKRRQTMMFSATKTH 213

Query: 191 --PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              A+TT A   +   + V+ +        ++   V+     R   +   L+ +  K  +
Sbjct: 214 KTDALTTFALKKEPIYIGVDDSKVEATVDGLEQGYVICPSEKRFLLLFTFLKKNRKKKVM 273

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  +V  F ++L      V+ + G+  Q+ R+       +    + + TDVAARG+
Sbjct: 274 VFFSSCLAVKYFHELLNYIDLPVMCIHGKQKQERRTTTFFQFCNAETGILLCTDVAARGL 333

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 334 DIPLVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 374


>gi|256070997|ref|XP_002571828.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238656976|emb|CAZ28058.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 426

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 181/345 (52%), Gaps = 21/345 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F +A    L  E +     +
Sbjct: 57  AIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGE-----A 111

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               L +  TRELA Q+ +E E +      + V V  GG+ + ++   L ++  HIVVGT
Sbjct: 112 NTTVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+ D +R K L + H+K  ++DE D+MLD L  R D++ I   +P +++++MFSAT+S
Sbjct: 172 PGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVMMFSATMS 231

Query: 191 PAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             I  + +N+ +D + + I +++       RQH       V V  ++++  +  +L    
Sbjct: 232 KEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHY------VKVKENEKNRKLFELLDELQ 285

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  +        ++L +  F  +A+   ++Q+ER    Q  ++ + R+ +AT++
Sbjct: 286 FNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVATNL 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RG+D+  + +V + ++  + +  LHR  R GR G KG+++  I
Sbjct: 346 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 390


>gi|90962087|ref|YP_536003.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821281|gb|ABD99920.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 440

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 9/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ- 122
            D         A+   P+RELA Q+    + L  ++   + +   +GG    R+   L+ 
Sbjct: 68  KDEVQ------AVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   +     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAI 344


>gi|15922792|ref|NP_378461.1| ATP-dependent RNA helicase [Sulfolobus tokodaii str. 7]
 gi|160286327|pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
           Helicase From Sulfolobus Tokodaii
 gi|15623583|dbj|BAB67570.1| 337aa long hypothetical ATP-dependent RNA helicase deaD [Sulfolobus
           tokodaii str. 7]
          Length = 337

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 172/340 (50%), Gaps = 26/340 (7%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I +A+ E G+ N T VQ   +   L+ K+V+V A+TGSGKT A+ + +    +       
Sbjct: 5   IEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMK------ 58

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 +L + PTREL  QV   +  +       VA   GG+    +   ++N A IVV 
Sbjct: 59  ------SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVA 111

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D      +++S  + V++DEAD M ++GF DDI+ IL  +  ++   +FSATI 
Sbjct: 112 TPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIP 171

Query: 191 PAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + K++    + +   I   N +H         V + D   + V  LR +  K  I
Sbjct: 172 EEIRKVVKDFITNYEEIEACIGLANVEHK-------FVHVKDDWRSKVQALRENKDKGVI 224

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V++  ++        + L G+L Q  R+  +   R+G   + I TDVA+RG+
Sbjct: 225 VFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGL 280

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+P +E VI+ +   +    +HR GRTGR GRKG ++  I
Sbjct: 281 DIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320


>gi|194214395|ref|XP_001915471.1| PREDICTED: similar to ATP-dependent RNA helicase DDX55 (DEAD box
           protein 55) [Equus caballus]
          Length = 627

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 192/368 (52%), Gaps = 25/368 (6%)

Query: 4   FENIP----QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +E++P     V+G  L E  +  +T VQ A +   L+ KDV   A TGSGKT+AF + + 
Sbjct: 9   WESLPVPLHPVLG-VLRELSFPYMTPVQSATIPLFLKNKDVAAEAVTGSGKTLAFVIPIL 67

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE- 117
             LL   ++   +    A+ I PTRELA+Q+   L            +  IGG +   + 
Sbjct: 68  EILLRREEKLKKSQVG-AIIITPTRELAIQIDEVLSHFTKPFPQFSQILWIGGRNPGEDV 126

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEF 171
            R  + G +I+V TPGRL D  R K  GL ++     L  +VLDEAD +LD+GF   I  
Sbjct: 127 ARFKEQGGNIIVATPGRLEDMFRRKAEGLALASCVRALDVLVLDEADRLLDMGFEASINT 186

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-------ASENRQHSDIDYRAV 224
           IL+  PK+RR  +FSAT +  +  L +   ++ VR+++       +S  +  S ++   +
Sbjct: 187 ILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGLAASSTQKTPSRLENYYM 246

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQE 282
           +    ++ N +V+ LR H  +  +VF ST A V  + K L   +   +++ + G++ + +
Sbjct: 247 VCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVKSVKIMCIHGKM-KYK 305

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+      R   + + + TDV ARGID+P++  V+  +  SN    +HR GRT R G  G
Sbjct: 306 RNKIFMEFRKLPSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTARIGHGG 365

Query: 343 MS-VFVIP 349
            + VF++P
Sbjct: 366 SALVFLLP 373


>gi|145233847|ref|XP_001400296.1| ATP-dependent RNA helicase eIF4A [Aspergillus niger CBS 513.88]
 gi|134034144|sp|A2QEN5|IF4A_ASPNC RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=Translation initiation factor 1
 gi|134057232|emb|CAK44496.1| unnamed protein product [Aspergillus niger]
          Length = 398

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 162/313 (51%), Gaps = 7/313 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P +   DV+  AQ+G+GKT  F ++    +  E        A  AL
Sbjct: 44  GFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQE------LKACQAL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  +     +    CIGG +V  +   L+ G  +VVGTPGR+ D 
Sbjct: 98  IVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDM 157

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I  + L    +K  +LDEADEML  GF + I  I    P+  ++ + SAT+   +  +  
Sbjct: 158 IERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVTLLSATMPQDVLEVTT 217

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            + +D +R+ +  +      I    + V   + + + + ++        A++FC+TR  V
Sbjct: 218 KFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKV 277

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  L    F V A+ G++ Q +R   ++  R G +RV IATD+ ARGID+  + LVI
Sbjct: 278 DWLTDKLTARDFTVSAMHGDMEQGQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVI 337

Query: 318 HAELSSNPENLLH 330
           + +L +N EN +H
Sbjct: 338 NYDLPANRENYIH 350


>gi|143456603|sp|Q0JM17|RH56_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 56
 gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|215695226|dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258618301|gb|ACV83946.1| DExD box helicase protein HLA-B associated transcript 1 [Oryza
           sativa Japonica Group]
          Length = 432

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 187/339 (55%), Gaps = 16/339 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 65  AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 117

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
             + AL +  TRELA Q+  E E  ++K    V VAV  GGV + + +  L+N   HIVV
Sbjct: 118 GQVGALVLCHTRELAYQICHEFER-FSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVV 176

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+    R K L++ +++  +LDE D+MLD L  R D++ I   +P  ++++MFSAT
Sbjct: 177 GTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSAT 236

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L       
Sbjct: 237 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH-YIKLSEAEKNRKLNDLLDALDFNQ 295

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD+  R
Sbjct: 296 VVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR 355

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  + +VI+ ++  + ++ LHR GR GR G KG+++
Sbjct: 356 GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAI 394


>gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|75320875|sp|Q5JK84|RH15_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 15
 gi|57899408|dbj|BAD88055.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|57900053|dbj|BAD88115.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|113532829|dbj|BAF05212.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|215768539|dbj|BAH00768.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218188434|gb|EEC70861.1| hypothetical protein OsI_02373 [Oryza sativa Indica Group]
          Length = 432

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 187/339 (55%), Gaps = 16/339 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 65  AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 117

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
             + AL +  TRELA Q+  E E  ++K    V VAV  GGV + + +  L+N   HIVV
Sbjct: 118 GQVGALVLCHTRELAYQICHEFER-FSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVV 176

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+    R K L++ +++  +LDE D+MLD L  R D++ I   +P  ++++MFSAT
Sbjct: 177 GTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSAT 236

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L       
Sbjct: 237 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH-YIKLSEAEKNRKLNDLLDALDFNQ 295

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD+  R
Sbjct: 296 VVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGR 355

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+  + +VI+ ++  + ++ LHR GR GR G KG+++
Sbjct: 356 GIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAI 394


>gi|124806246|ref|XP_001350668.1| DEAD-box helicase [Plasmodium falciparum 3D7]
 gi|23496794|gb|AAN36348.1| DEAD-box helicase [Plasmodium falciparum 3D7]
          Length = 742

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 165/307 (53%), Gaps = 11/307 (3%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AS    L + PTREL +QV  E++       +      GGV  + +  +L+ GA I+V T
Sbjct: 425 ASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVAT 484

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT   
Sbjct: 485 PGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPE 544

Query: 192 AITTLAKNY-QKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI- 248
            +  LA ++   D V++ I  +E   + +I+   ++ +  D    +++ L+ +   N I 
Sbjct: 545 QVRKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKIL 604

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+ +     K L  H +  +++ G+  Q+ER   L   +  R  + +ATDVA+RG+
Sbjct: 605 IFCDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGL 664

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV------FVIPQNMQRRAE--RLF 360
           D+ ++ +VI+ ++ +  E+ +HR GRTGRAG+KG S+      + +PQ ++   E  +L 
Sbjct: 665 DIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLL 724

Query: 361 REANVSV 367
            + N +V
Sbjct: 725 NKTNQTV 731


>gi|330796382|ref|XP_003286246.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
 gi|325083751|gb|EGC37195.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
          Length = 630

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/368 (29%), Positives = 177/368 (48%), Gaps = 26/368 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ + +A+   GY   + +Q   +   +  +D+L  A+TGSGKT AF + +    +++
Sbjct: 216 SLPRQVLDAVRHLGYEKPSPIQMQSIPVSVSGRDILGIAETGSGKTCAFVIPMC-IYISK 274

Query: 66  NDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             R +    A  P A+ +APTREL  Q+ +E        G  V   +GG  +  +   L 
Sbjct: 275 QPRLTKETEAEGPYAVVMAPTRELVQQIEKETRNFAQFYGFRVVSLVGGQPIEEQAYQLG 334

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G  IVV TPGRL D ++ + L ++    +VLDEAD M++LGF   +  +LD+ P     
Sbjct: 335 KGCEIVVATPGRLNDCLQKRYLVLNQCNYIVLDEADMMINLGFESQVTSVLDAMPSTNLK 394

Query: 180 ------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                             R  ++FSAT+ P +  +AK Y +    + I    +    I  
Sbjct: 395 SENEELAERQETDRERVYRTTILFSATMPPQVEQIAKKYLRRPCTITIGEAGKVVDRIRQ 454

Query: 222 RAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V + +D+   +V +++       I+F + +        VL E       L G  SQ
Sbjct: 455 TVIFVKSENDKKEHLVQLIKDGPPPPIIIFVNKKKHCENIGAVLEECGVSYTILHGGRSQ 514

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL   +   + V IAT VA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG 
Sbjct: 515 EQREAALDNFKKKNSDVLIATGVASRGIHVDGVTHVINFDIPNNIEDYTHRIGRTGRAGS 574

Query: 341 KGMSVFVI 348
            G++   I
Sbjct: 575 SGLATSFI 582


>gi|297459070|ref|XP_613184.4| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|297487271|ref|XP_002696147.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos
           taurus]
 gi|194386232|dbj|BAG59680.1| unnamed protein product [Homo sapiens]
 gi|296476160|gb|DAA18275.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1 [Bos taurus]
          Length = 535

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 86  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 144

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 145 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 204

Query: 191 PAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++          
Sbjct: 205 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 265 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 325 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 384

Query: 364 NVSV 367
           N ++
Sbjct: 385 NQAI 388


>gi|28571808|ref|NP_732694.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|28571809|ref|NP_524446.3| pitchoune, isoform A [Drosophila melanogaster]
 gi|33860195|sp|Q9VD51|DDX18_DROME RecName: Full=Probable ATP-dependent RNA helicase pitchoune
 gi|17945959|gb|AAL49024.1| RE48840p [Drosophila melanogaster]
 gi|21429110|gb|AAM50274.1| LD46167p [Drosophila melanogaster]
 gi|28381409|gb|AAF55951.2| pitchoune, isoform A [Drosophila melanogaster]
 gi|28381410|gb|AAN13900.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|220946416|gb|ACL85751.1| pit-PA [synthetic construct]
 gi|220956056|gb|ACL90571.1| pit-PA [synthetic construct]
          Length = 680

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 201 AIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 258

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 259 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 318

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 319 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 378

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 379 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 437

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 438 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 497

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 498 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 538


>gi|296201834|ref|XP_002748196.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 3
           [Callithrix jacchus]
          Length = 544

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 95  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 153

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 154 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 213

Query: 191 PAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++          
Sbjct: 214 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 273

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 274 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 333

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 334 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 393

Query: 364 NVSV 367
           N ++
Sbjct: 394 NQAI 397


>gi|332024917|gb|EGI65105.1| ATP-dependent RNA helicase abstrakt [Acromyrmex echinatior]
          Length = 625

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 9/343 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71
            L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +    L +  +  F  
Sbjct: 198 GLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEFCLEQEIDMPFIK 257

Query: 72  ASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVC---IGGVSVHRERRDLQNGA 125
              P  L I P+RELA Q   + R       +T      C   IGGV V      +  G 
Sbjct: 258 KEGPYGLIICPSRELAKQTYDIIRHYTNSLRQTDCPEIRCCLAIGGVPVSESLAIINKGV 317

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+  I      +R+ L+F
Sbjct: 318 HIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLF 377

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I   A++     V +N+        ++      V    +   ++  L+   A 
Sbjct: 378 SATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEAKIVYLLECLQ-KTAP 436

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F   +  V    + L     + VA+ G + Q+ERS +++  R GR  V +ATDVA+
Sbjct: 437 PVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRAGRKDVLVATDVAS 496

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I
Sbjct: 497 KGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFI 539


>gi|296201836|ref|XP_002748197.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 4
           [Callithrix jacchus]
          Length = 535

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 86  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 144

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 145 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 204

Query: 191 PAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++          
Sbjct: 205 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 265 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 325 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 384

Query: 364 NVSV 367
           N ++
Sbjct: 385 NQAI 388


>gi|48478417|ref|YP_024123.1| ATP-dependent RNA helicase [Picrophilus torridus DSM 9790]
 gi|48431065|gb|AAT43930.1| ATP-dependent RNA helicase [Picrophilus torridus DSM 9790]
          Length = 387

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 197/365 (53%), Gaps = 16/365 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I E+L   G+   T VQ   +   L  +DV++ + TGSGKT AF +      L   
Sbjct: 11  IDKRIKESLDRMGFYEPTEVQGLAIPEILSGRDVVIKSMTGSGKTAAFLIPAIQRALGS- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +F        L I PTRELA+Q   V   +   + +T VV     GG S+ ++  DL++
Sbjct: 70  -KFFNT----VLIILPTRELALQTYSVALNISRNFFRTTVVY----GGSSMEKQIHDLRD 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            + I++GTPGR+ D I    LN+ H+   +LDEAD MLD+GF DDI  I+++ P+KR+ +
Sbjct: 121 -SKIIIGTPGRIIDLINRDLLNLEHVGMFILDEADMMLDMGFIDDIYKIIENLPEKRQNV 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           + SAT+   +  + KN   D   + + S       I +   ++    + +A+++ +  + 
Sbjct: 180 LASATMPERLDDMIKNLMNDPELIAV-SNGYTPKTIVHDYTIIPEHKKFSALLSYIDENR 238

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+      +++L +  F+ V L G++ Q+ R  +++  R+ R+ + IAT+V
Sbjct: 239 DMKRIIFVRTKHGAVVLSEILNKCGFKNVTLHGDMRQRSREISIKRFRNYRSGIMIATNV 298

Query: 304 AARGIDLPDLELVIHAELS-SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           AARGID+PD++ +I+ +    + ++  HR+GR+GR GR G ++ +  +  +     +  +
Sbjct: 299 AARGIDIPDVDEIINFDAPIDDIKSYSHRAGRSGRFGRPGHALTIFTEKQKNMINEIEMK 358

Query: 363 ANVSV 367
            NV +
Sbjct: 359 NNVKM 363


>gi|149065925|gb|EDM15798.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_b [Rattus
           norvegicus]
          Length = 523

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 166/302 (54%), Gaps = 9/302 (2%)

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVGTP 132
            P+ L +APTRELA QV +++   Y K   + + CI GG     + RDL+ G  I + TP
Sbjct: 36  GPICLVLAPTRELAQQV-QQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATP 94

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT    
Sbjct: 95  GRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKE 154

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGAK---NAI 248
           +  LA+++ +D  ++N+ +     +    + V V + S++D+ ++ ++    A+     I
Sbjct: 155 VRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTI 214

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATDVA+RG+
Sbjct: 215 IFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGL 274

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREANV 365
           D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +  F  P N+++  E  ++  EAN 
Sbjct: 275 DVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQ 334

Query: 366 SV 367
           ++
Sbjct: 335 AI 336


>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
 gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
          Length = 396

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 164/314 (52%), Gaps = 9/314 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLA 77
           GY + +++Q+  + P    +DVL  AQ+G+GKT  F + AL +  + E        A  A
Sbjct: 41  GYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQNIDVNE-------KATQA 93

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+Q+   +  +     V V   IGG S+  +    ++G  IVVGTPGR+ D
Sbjct: 94  LILAPTRELALQIQNVISHIGLYLNVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVSD 153

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I  +      +K  +LDEADEML  GF++ I  I    P+  ++++ SAT+   +  + 
Sbjct: 154 MIERRYFKTHKVKMFILDEADEMLSSGFKEQIYNIFKLLPETTQVVLLSATMPQDVLEVT 213

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRAS 256
             +  + VR+ +  +      I    + V   + + + + ++        A++FC+TR+ 
Sbjct: 214 TKFMNNPVRILVKKDELTLEGIKQYYINVEEEEYKFDCLCDLYDSISVTQAVIFCNTRSK 273

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      L  + F V A+  +L Q ER   +   R G +R+ I+TD+ ARGID+  + LV
Sbjct: 274 VENLMAKLKANNFTVSAIHADLPQAERDTIMNEFRSGSSRILISTDLLARGIDVQQVSLV 333

Query: 317 IHAELSSNPENLLH 330
           I+ +L +N EN +H
Sbjct: 334 INYDLPANKENYIH 347


>gi|90419641|ref|ZP_01227551.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336578|gb|EAS50319.1| ATP-dependent RNA helicase rhlE [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 382

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 145/285 (50%), Gaps = 6/285 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+   GY   T +QE  +   L  +DVL  AQTG+GKT +F L + + L     R   A 
Sbjct: 35  AVHAAGYNEPTPIQEQAIPHALERRDVLGIAQTGTGKTASFVLPMLTMLEQGRAR---AR 91

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L I PTRELA QV            + VA+ IGGVS   + R +  GA +++ TPG
Sbjct: 92  MPRTLIIEPTRELAAQVAESFTRYGLDQKLNVALLIGGVSFADQDRKIDRGADVLIATPG 151

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FSAT+ P I
Sbjct: 152 RLLDHFERGKLLMTAVEVLVIDEADRMLDMGFIPDIERICKLLPVSRQTLFFSATMPPEI 211

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVF 250
           T L + + ++ VRV +A        +  R V     D   RD     I       NAI+F
Sbjct: 212 TRLTEQFLQNPVRVEVAKPASAALTVTQRLVATKKDDFEKRDTLRRVIRDQTELTNAIIF 271

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           C+ +  V+   + L  H F   AL G++ Q+ R+  LQ  RD R+
Sbjct: 272 CNRKRDVATLFRSLERHGFSAGALHGDMDQRSRTAMLQGFRDTRS 316


>gi|291406387|ref|XP_002719528.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 1
           [Oryctolagus cuniculus]
          Length = 535

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 86  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 144

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 145 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 204

Query: 191 PAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++          
Sbjct: 205 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 265 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 325 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 384

Query: 364 NVSV 367
           N ++
Sbjct: 385 NQAI 388


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 184/365 (50%), Gaps = 14/365 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----L 58
           +FE+ P ++  ++ + G+   T +Q       L+  D++  AQTG+GKT+A+ +     L
Sbjct: 329 VFEHYPDIMA-SIRKVGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHL 387

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S  ++++ R  P      L +APTRELA+QV  E    YA  G+  ++C+ G    + +
Sbjct: 388 TSQPISKDQRGGPG----MLVLAPTRELALQVEAECS-KYAYKGIK-SICVYGGGDRKGQ 441

Query: 119 RDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            D+   G  IV+ TPGRL D      +N+  +  +VLDEAD MLD+GF   I  IL    
Sbjct: 442 IDMVTKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVR 501

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ +M SAT    +  LAK+Y K+ + V + + +        + V+V   ++  A ++
Sbjct: 502 PDRQTVMTSATWPDGVRRLAKSYLKNPMIVYVGTLDLAAVSTVQQKVIVIPEEKKRAFMH 561

Query: 238 --ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I         I+F   + +              V +L G   Q +R  AL   + G+ 
Sbjct: 562 SFIKSMKPKDKVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKV 621

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G +V ++  N  R 
Sbjct: 622 RILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRF 681

Query: 356 AERLF 360
           A  L 
Sbjct: 682 ASELI 686


>gi|61679617|pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
          Length = 386

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 22  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 74

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 75  GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 135 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 195 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 253

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358


>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
 gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
          Length = 435

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 187/369 (50%), Gaps = 28/369 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T+VQE  + P L+ ++ +  A+TGSGKT AF L +   L  E           AL
Sbjct: 24  GLAKATAVQEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQNLAKE------PFGIYAL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA Q+  +        G+  A+ IGG+ +  +   L    HIV+ TPGRL D 
Sbjct: 78  ILTPTRELAFQLADQFRAFGKPIGMRDAIVIGGLDIISQSIALSKKPHIVIATPGRLADL 137

Query: 139 IRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA----- 192
           I     ++ S +K +VLDEAD +L+  F  D+  I +  P+ R+ L+FSAT++ A     
Sbjct: 138 IDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQTLLFSATMTNAMARAQ 197

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK------ 245
            +    K +  +   + I++   Q   +D   +L+    +D   V +++    +      
Sbjct: 198 EVAASKKPFIYEDTDMKISATVEQ---LDQHYLLMPAVVKDCYFVYLIKQLSLELEKNPR 254

Query: 246 -NAIVFCST-----RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            N ++F ST     R S      +L+   F   AL   + Q++R  +L   ++G  ++ +
Sbjct: 255 WNMMIFTSTYNFSNRRSCQILAIMLSRLEFSCAALHSLMPQRQRLGSLARFKNGLLKILV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +E V++  +  + ++ +HR GRT RAG+KGM+V ++ Q    R   +
Sbjct: 315 ATDVASRGLDIPTVEAVVNYNVPLSADDYIHRVGRTARAGKKGMAVTLMTQYDVNRIHNI 374

Query: 360 FREANVSVV 368
               NV ++
Sbjct: 375 ETTTNVKLL 383


>gi|291406389|ref|XP_002719529.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2
           [Oryctolagus cuniculus]
          Length = 544

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 95  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 153

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 154 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 213

Query: 191 PAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++          
Sbjct: 214 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 273

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 274 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 333

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 334 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 393

Query: 364 NVSV 367
           N ++
Sbjct: 394 NQAI 397


>gi|146312704|ref|YP_001177778.1| ATP-dependent RNA helicase SrmB [Enterobacter sp. 638]
 gi|145319580|gb|ABP61727.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 442

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/335 (34%), Positives = 175/335 (52%), Gaps = 8/335 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +   L+    + S    P  
Sbjct: 22  KGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLIDFPRKKS--GPPRI 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELAVQV      L AKT + +A   GGV+             IVV T GRL  
Sbjct: 80  LILTPTRELAVQVAEHARELAAKTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLMQ 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTL 196
           +I+ +  +   ++ ++LDEAD ML+LGF  DIE I   +  +++ ++FSAT+   AI   
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLELGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDF 199

Query: 197 AKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           A+   +D   V+     R+   I    YRA       +   + ++L+       IVF   
Sbjct: 200 AERLLEDPAEVSATPSTRERKKIHQWYYRA--DNFEHKLELLKHLLKQDDTTRTIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L         L G++ Q +R+  ++ + +GR  V +ATDVAARGID+P++
Sbjct: 258 RERVHELAAQLRSAGIDNCYLEGDMPQVKRTEGIKRLTEGRVNVLVATDVAARGIDIPEV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             VI+ ++  + +  LHR GRTGRAG KG ++ ++
Sbjct: 318 SHVINFDMPRSGDTYLHRIGRTGRAGLKGTAISLV 352


>gi|301117302|ref|XP_002906379.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262107728|gb|EEY65780.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 499

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 177/348 (50%), Gaps = 26/348 (7%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDRFSPASA 74
           GY  LT VQ   L   L  +DVL   +TG+GKT+AF L     +L     + D+ S    
Sbjct: 55  GYEFLTHVQNDTLPLVLDGRDVLAKGKTGNGKTIAFLLPTLERMLTHPQPKQDKIS---- 110

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN--GAHIVVGTP 132
             AL I+PTRELA Q+  E   L    G+  +  +GG +V+++ ++L    G  ++V TP
Sbjct: 111 --ALVISPTRELAQQIAVEAVKLTNAHGLRTSCFVGGSAVNKDVKELTQSGGIDVLVSTP 168

Query: 133 GRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           GRL  H+      I      L+ +VLDEAD +LD+GFR DI  I+   PK+R+ L+FSAT
Sbjct: 169 GRLQAHLEDNSGRIRQKLDSLQVLVLDEADRLLDMGFRPDIMRIISHLPKERQTLLFSAT 228

Query: 189 ISPAITTLAKNYQ--KDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYH-- 242
           + PA T   K+     D V V+    + Q ++       V+  L D    +  IL  H  
Sbjct: 229 L-PAATEELKDVALLDDYVFVDTIEGDDQQTNTQAVQEYVVCDLQDVIPVVEGILEEHMK 287

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRARVCIA 300
             A   IVF  T  S     ++     FQ V+ +    SQ  R+ A    R G+  +  +
Sbjct: 288 LPAYKVIVFLPTARSAQFMAQLFQSAGFQNVLEMHSRKSQSARTKAADAFRKGKKMIMFS 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +DV+ARG+D PD+ LV+   L+   +  +HR GRT RAG +G  + V+
Sbjct: 348 SDVSARGVDYPDVSLVLQVGLTDR-DQYIHRLGRTARAGMEGRGILVL 394


>gi|194388512|dbj|BAG60224.1| unnamed protein product [Homo sapiens]
          Length = 544

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 164/304 (53%), Gaps = 9/304 (2%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGAHIVVG 130
              P+ L +APTRELA QV +++   Y +   + + CI GG     + RDL+ G  I + 
Sbjct: 95  GDGPICLVLAPTRELAQQV-QQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIA 153

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT  
Sbjct: 154 TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 213

Query: 191 PAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKN 246
             +  LA+++ KD + +NI A E   + +I     +    ++D  ++ ++          
Sbjct: 214 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 273

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+R
Sbjct: 274 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 333

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAE--RLFREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +  F  P N+++ ++   + REA
Sbjct: 334 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 393

Query: 364 NVSV 367
           N ++
Sbjct: 394 NQAI 397


>gi|66532824|ref|XP_624894.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis mellifera]
          Length = 424

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 183/346 (52%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L L EN
Sbjct: 51  PEIL-RAIIDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTEN 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        L +  TRELA Q+ +E E +      V V V  GG+ + ++   L+N  
Sbjct: 110 QVY-------VLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNTC 162

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   +R K LN+ HLK  +LDE D+ML+L   R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 223 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   ++Q+ER +  Q  +D + R+ +AT+
Sbjct: 283 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATN 342

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ ++
Sbjct: 343 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLV 388


>gi|19773876|gb|AAL98920.1| Bat1 [Rattus norvegicus]
          Length = 428

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIPPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLQFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|296198571|ref|XP_002746771.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Callithrix
           jacchus]
          Length = 637

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 186/378 (49%), Gaps = 44/378 (11%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F   P+V+ E + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 236 FHYYPEVM-ENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 294

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  T   + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 295 LQPTFKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 347

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD MLD+GF   I + +LD  
Sbjct: 348 IEELRKGVDIIIATPGRLNDFQMNNFVNLKNITYLVLDEADRMLDMGFEPQIMKILLDVR 407

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKD---------------AVRVNIASENRQHSDIDY 221
           P  R+ +M SAT   ++  LA++Y K+               +V+ NI     +   I  
Sbjct: 408 PD-RQTVMTSATWPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVKQNIIITTEEEKWIHI 466

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +  L +LS  D  IV             F S +A     +  L      + +L G+  Q+
Sbjct: 467 QTFLQSLSTTDKVIV-------------FVSRKAVADHLSSELILGNMSIESLHGDREQR 513

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL+  + G+ R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR 
Sbjct: 514 DREKALENFKTGKVRILIATDLASRGLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRT 573

Query: 342 GMSVFVIPQNMQRRAERL 359
           G+S+  + +N  R A  L
Sbjct: 574 GVSITTMTRNDWRFAPEL 591


>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 772

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 174/338 (51%), Gaps = 12/338 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL     + P   
Sbjct: 262 LAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFVVPILERLL-----YRPKKV 316

Query: 75  PLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P +  + + PTRELA+Q       L A T +   + +GG+S+  +  +L+    +++ TP
Sbjct: 317 PTSRVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRLRPDVIIATP 376

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+R     N+  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT++ 
Sbjct: 377 GRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTS 436

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNA 247
           ++  L +       RV + S+  +      +  +     R+      +V+I +    +  
Sbjct: 437 SVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREEKRMGYLVHICKTMHTERV 496

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   +    R   +          L G ++Q +R  +++  RDG+    +ATD+A+RG
Sbjct: 497 IVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYLLATDLASRG 556

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  ++ VI+ E   N E  +HR GRT RAGR G+++
Sbjct: 557 LDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAI 594


>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
 gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
          Length = 748

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/352 (31%), Positives = 187/352 (53%), Gaps = 27/352 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L+  GY   + +Q A +   L  KD++  A TGSGKT A+ + +   LL ++   S  
Sbjct: 249 KGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKS---SKV 305

Query: 73  SAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           ++   + + PTRELA+QV   G+++        +   + +GG+++ ++ + L+    IVV
Sbjct: 306 ASTRVVILTPTRELAIQVCDVGKKIGRYV--NNLTFGLAVGGLNLRQQEQQLKTRPDIVV 363

Query: 130 GTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMFSA 187
            TPGRL DHIR     ++  L+ +V+DEAD ML+ GF+ ++  IL   PK KR+ ++FSA
Sbjct: 364 ATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIPKHKRQTMLFSA 423

Query: 188 TISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRY-- 241
           T++  I  L +      VR+ I    A+ N+   +       V +  +D     +L Y  
Sbjct: 424 TMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQE------FVRIRKKDEMKPALLYYLL 477

Query: 242 -----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      +VF S + +  R   +L     +V  L G L+Q++R N +   ++    
Sbjct: 478 KSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFKNLTVP 537

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G S+  +
Sbjct: 538 VLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFV 589


>gi|255718187|ref|XP_002555374.1| KLTH0G07766p [Lachancea thermotolerans]
 gi|238936758|emb|CAR24937.1| KLTH0G07766p [Lachancea thermotolerans]
          Length = 764

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 214/410 (52%), Gaps = 29/410 (7%)

Query: 2   KIFENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++F+++P   Q + + L +  ++ +T +Q+  +   L+  D+L +A+TGSGKT+AF + +
Sbjct: 41  ELFKDLPLSHQTL-KGLRDSAFIKMTEIQKMSIPVSLKGHDLLAAAKTGSGKTLAFLIPV 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E  +++      AL I+PTRELA+Q    L  +   T     + IGG  V  E 
Sbjct: 100 IEKLYRE--KWTEFDGLGALIISPTRELAMQTYEVLTKIGRYTSFSAGLVIGGKEVKFEL 157

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            D  +  +I+VGTPGR+  H+ +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P
Sbjct: 158 -DRISKINILVGTPGRILQHMDQAVGLNTSNLQVLVLDEADRCLDMGFKKTLDAIVMNLP 216

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-------IDYRAVLVALSD 230
             R+ L+FSAT S ++  LA+    D   V  A E +  S+       +    + V L D
Sbjct: 217 PVRQTLLFSATQSQSLADLARLSLTDYKSVGTA-EVKDDSNSSATPDTLQQSYISVELPD 275

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + + + + ++ H     IVF S+   V      F K+  +    ++ L G   Q  R+  
Sbjct: 276 KLDILFSFIKTHLKCKMIVFLSSSKQVHFVYETFRKL--QPGISLMHLHGRQKQTARTET 333

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-V 345
           L      +     ATDV ARGID P ++ V+ A+   N +  +HR GR+ R G++G S V
Sbjct: 334 LDKFSRAQHTCLFATDVVARGIDFPAVDWVVQADCPENVDTYIHRVGRSARYGKQGKSLV 393

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAP-SVEAIRERDAQRILQDPLFLD 394
            + PQ  +   +RL ++ ++    EP   +++  R++  +  LQ  LF D
Sbjct: 394 MLTPQEEEGFLKRL-KQRHI----EPNKLTIKQSRKKSIKPQLQSLLFQD 438


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 178/338 (52%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E G+   T VQ  ++   L+ + V+  +QTGSGKT  F L +  T+  E     
Sbjct: 14  IDAALKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQTIDPE----- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
             +   A+   P+RELA Q+    + +  +++  ++V   +GG    R+   L++    I
Sbjct: 69  -LTEVQAVITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGGTDKQRQIEKLEHRQPQI 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGR+ D ++ + L++ +   +V+DEAD  LDLGF  + + I  + PK+ +M++FSA
Sbjct: 128 VIGTPGRVLDLMKSQALDVHNASVLVVDEADMTLDLGFLKETDAIASAMPKELQMMVFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    + Y  D +   + ++N     ID   +     DR+  I  +L       A
Sbjct: 188 TIPDKLKPFLRKYMTDPIVEVVENKNVISPTIDNWLISTKGRDRNQLIYQLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V   T+ L     +V  + G +  +ER   ++ +++   +  +ATD+AARG
Sbjct: 248 LVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQFVVATDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +  VI+ ++  + E  +HR GRTGR G +G ++
Sbjct: 308 IDIEGVSQVINDDIPEDLEFFIHRVGRTGRNGMEGTAI 345


>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
 gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
          Length = 782

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 212/416 (50%), Gaps = 31/416 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------GLA 57
           F+  P+V+ + + + G+   T +Q       L+  D++  AQTG+GKT+ +       L 
Sbjct: 247 FQCYPEVM-KNIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  TL  + +R      P  L + PTRELA+QV  E    Y+  G+      GG +   +
Sbjct: 306 LQPTLKGQRNR------PGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQ 358

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
             +L+ G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I + +LD  
Sbjct: 359 IEELRKGVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVR 418

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAI 235
           P  R+ +M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + +
Sbjct: 419 PD-RQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 236 VNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              L+   + +  IVF S +A     +  L      + +L G+  Q++R  AL+  + G+
Sbjct: 478 HTFLQNMSSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R
Sbjct: 538 VRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWR 597

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKM 403
            A  L      AN S+  E     E  +    +R+ +R ++ P      QG  KK 
Sbjct: 598 VASELINILERANQSIPEELVSMAERFKAHQQKREMERKMERP------QGRPKKF 647


>gi|67970471|dbj|BAE01578.1| unnamed protein product [Macaca fascicularis]
          Length = 424

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 55  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 107

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 108 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 167

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 168 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 227

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 228 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 286

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 287 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 346

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 347 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 391


>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae]
          Length = 856

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 344 NLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 401

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 402 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 458

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 459 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 518

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++ ++  L +      VR+ + S+     ++    V +     D  +  +L   
Sbjct: 519 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLC 578

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R          +   L G +SQ++R  +++  R+G+   
Sbjct: 579 KEVYTG--RVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSF 636

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+AARG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 637 LLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 686


>gi|325192108|emb|CCA26569.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325192439|emb|CCA26875.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 648

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 190/386 (49%), Gaps = 24/386 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE +  P+ I +AL  +     T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 195 IKSFEMMRFPEAILKALKAKKINRPTPIQVQALPCILSGRDLIGIAFTGSGKTITFTLPL 254

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA---------V 107
               L E  +        P  + + P+REL  Q     E +   T  + A         +
Sbjct: 255 IMFALEEEMKMPIIGQEGPFGIIVGPSRELMRQT---FEVVQHFTEALSAAGYPQLRSLL 311

Query: 108 CIGGVSVHRERRDL--QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            IGG    R + +L  + G HIVV TPGRL   ++   +N+   K + LDE D MLDLGF
Sbjct: 312 LIGGED-KRTQCELIARKGVHIVVATPGRLNHLLKTNEMNLRLCKYICLDEGDRMLDLGF 370

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +++  I +    +R+ L+FSAT+       AK      V VN+      + D+      
Sbjct: 371 DEEVSAIFNHFTSQRQTLLFSATMPQKFQDFAKQVLVKPVFVNVGRAGAANLDVIQEVEY 430

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V    +   ++  L+  G    ++FC  +  V    + L     Q V + G   Q+ER+ 
Sbjct: 431 VKQDAKIVYLLECLQKTGPP-VMIFCEKKGDVDDIYEYLILKGIQAVGIHGGKDQKERNE 489

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-S 344
           A+ + ++G+  V IATD+AA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G+ +
Sbjct: 490 AIDLFKNGQKDVLIATDIAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVAT 549

Query: 345 VFV---IPQNMQRRAERLFREANVSV 367
            F+   +P+++    + L  EA  SV
Sbjct: 550 TFINKNVPESVLLDLKHLLVEAKQSV 575


>gi|302334881|ref|YP_003800088.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301318721|gb|ADK67208.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 554

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 152/302 (50%), Gaps = 6/302 (1%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL + PTRELA Q+   +  +  +TG    V +GG    R+ R L++G  ++V TPGR
Sbjct: 207 PFALIVTPTRELAAQIEGVVTTVCEQTGQRAVVVMGGAKFERQIRGLESGCDLLVATPGR 266

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +    +++  +  +VLDEAD MLD+GF   +  I+   P +R+ L+FSATI P+I 
Sbjct: 267 LIDLMEHGHVSLKDVHVLVLDEADRMLDMGFWPSVRRIVKECPDERQTLLFSATIPPSIK 326

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-----KNAIV 249
                  KD V + +A        ++     V    +   +  +L   GA     +  +V
Sbjct: 327 GTVDAMLKDPVVIEVAHVGETADTVEEHLCPVTQGQKTQLLEALLSAGGAAGVQPERVLV 386

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+       K L         +  +  Q+ R  AL+  R G  +V +ATDV +RGID
Sbjct: 387 FCRTKHRADDLDKRLKSAGISADVMHADRPQRARERALEKFRAGTCQVLVATDVMSRGID 446

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVV 368
           +  ++ V++ ++  +PE+ +HR GRTGRAG  G +  FV P  +    E  +    +  V
Sbjct: 447 VSGIDAVVNYDVPMDPEDYVHRIGRTGRAGATGHAYTFVAPDEISPLREIEYFTKKLVPV 506

Query: 369 WE 370
           W+
Sbjct: 507 WD 508



 Score = 37.7 bits (86), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 24/40 (60%)

Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
          G+   T VQ   +   L  +DVL SAQTG+GKT AF L +
Sbjct: 22 GFTRPTPVQAQAIPEILAGRDVLASAQTGTGKTAAFALPV 61


>gi|153806718|ref|ZP_01959386.1| hypothetical protein BACCAC_00989 [Bacteroides caccae ATCC 43185]
 gi|149131395|gb|EDM22601.1| hypothetical protein BACCAC_00989 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 175/333 (52%), Gaps = 21/333 (6%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           L  +QEA L     +KDV++ + TGSGKT+A+ L L  TL  ++           L + P
Sbjct: 20  LNPMQEASLEQATGKKDVILLSPTGSGKTLAYLLPLLLTLKTDDGSVQ------VLILVP 73

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGAHIVVGTPGRLCDHIRG 141
           +RELA+Q+    + +   T      C GG  +  E++  L N   I++GTPGR+ DH+  
Sbjct: 74  SRELALQIDSVFKAM--GTSWKTCCCYGGHPIAEEKKSILGNHPAIIIGTPGRITDHLSK 131

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAK 198
              N   +  +++DE D+ L+ GF D++  I+   P  ++ ++ SAT +   P  T L +
Sbjct: 132 GNFNPETIHTLIIDEFDKSLEFGFHDEMAEIITQLPGLKKRMLLSATDAEEIPQFTGLNR 191

Query: 199 NYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
                 V++N    ASE  Q S +    V+    D+ + + N+L   G+ ++IVFC+ R 
Sbjct: 192 -----TVKLNFLPDASE-EQESRLTLMKVISPSKDKIDTLYNLLCTLGSSSSIVFCNHRD 245

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V R  K+LAE         G + Q +R  AL   R+G   V I+TD+AARG+D+P++E 
Sbjct: 246 AVDRVHKLLAEKKLFAERFHGGMEQPDRERALYKFRNGSCHVLISTDLAARGLDIPEIEH 305

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +IH  L  N E   HR+GRT R    G S  V+
Sbjct: 306 IIHYHLPVNEEAFTHRNGRTARWDATGTSYLVL 338


>gi|149197724|ref|ZP_01874774.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139294|gb|EDM27697.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 482

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/345 (33%), Positives = 179/345 (51%), Gaps = 18/345 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+   GY   T +Q   L   L+ +D LV A+TG+GKT AF +     L AE 
Sbjct: 12  LKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQHLRAE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L + P REL  Q+ +E   L        VA   GG  +   ++ L +GA
Sbjct: 71  -----VQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSL-HGA 124

Query: 126 HIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            ++  TPGRL D I+ +GL N + +  +V+DEAD + D+GFR+ +  IL   PK  + ++
Sbjct: 125 QVISATPGRLID-IKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTVL 183

Query: 185 FSATISPAITTLAKNYQKDAV----RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            SAT +  I   +K   K  V    R NI SE     +++  AV V   +       +L+
Sbjct: 184 CSATFTDDIKNFSKTLLKKPVIIEDRSNIGSE----ENLEEWAVSVYPENHLKLTEKLLK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     IVFC+ +  V    + L +  F V  L   + +  R+ AL++ RD + R+ +A
Sbjct: 240 KHKNDQVIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           TDVA+RGID+P L LV++ +L  +  + +HR+GRT RAG+ G+ +
Sbjct: 300 TDVASRGIDIPGLPLVVNYDLPYDFPDYVHRAGRTARAGKSGLVI 344


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 174/350 (49%), Gaps = 12/350 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K FE +P    + L  +     T +Q+AI    L  +DV+  A+TGSGKT+A+ L     
Sbjct: 434 KDFEFLPAEYQQILISKKITTPTPIQKAIFPLILEGRDVIAIAETGSGKTLAYALPGIIH 493

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-----R 116
             A+         P  L +APTRELA Q+  + E L+ +T  V       +        +
Sbjct: 494 SQAQ----PKVLGPRILVLAPTRELAQQIQSQYE-LFTRTCCVYGGVFKNLQYSEILGIK 548

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E R+  N   +++ TPGRL D ++  GL ++ +  VVLDEAD MLD+GF D I  IL + 
Sbjct: 549 ESRNKINLPSVIISTPGRLLDFMKD-GLPLNSITQVVLDEADRMLDMGFEDQITQILSAV 607

Query: 177 PKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              R+ L FSAT    +  LA +   +D + + +  +    +    + V++   ++    
Sbjct: 608 RDDRQTLFFSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKF 667

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      +  ++FC  +    +    L+ H  +   L G+L Q ER   +   + G  
Sbjct: 668 AELTDRLKGQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAI 727

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              I T++A+RG+D+ D+++VI+ +     E+ +HR GRTGRAG+KG ++
Sbjct: 728 NCLITTNLASRGLDVSDVDVVINYDFPDTIEDYIHRIGRTGRAGKKGQAI 777


>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 414

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 177/360 (49%), Gaps = 11/360 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E+GYV  + +QE  +   L  KD++  A+ G+GKT +F       L+   ++  P    +
Sbjct: 57  EKGYVKPSPIQEKAIPIALAGKDIMARAKNGTGKTASF-------LIPALEKTDPTKDYI 109

Query: 77  -ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+Q  +  + L     V V    GG S+  +   L    HI+V TPGR+
Sbjct: 110 QVLILVPTRELALQTSQVCKELGKYMNVKVMATTGGTSLKDDIMRLYETVHILVATPGRV 169

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D  +    N+S+   +++DEAD++L   F+  IE +++  P +R++L+FSAT    + T
Sbjct: 170 LDLAQKNVANLSNTHTIIMDEADKLLSQDFQPLIEQLINFLPPQRQILLFSATFPLTVKT 229

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
              NY + A  +N+  E        Y A  V    + + +  +        +I+FC++  
Sbjct: 230 FKDNYLQKAYEINLMEELTLKGVTQYYA-FVDERQKIHCLNTLFSKLQINQSIIFCNSVN 288

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    K + E  +    +  ++ Q  R+      R+G  R  +++D+  RGID+ D+ +
Sbjct: 289 RVELLAKKITELGYSCFYIHAKMQQAHRNRVFHDFRNGHCRNLVSSDLFTRGIDIQDVNV 348

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ +E    +  +P P V
Sbjct: 349 VINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIEQELGTEI--KPIPPV 406


>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873494|gb|EAT37719.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 804

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 184/349 (52%), Gaps = 16/349 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   GY+  T +Q A +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 187 NLSRPLMKAIGVLGYIYPTPIQAATIPIALLGRDICGCAATGTGKTAAYMLPTLERLL-- 244

Query: 66  NDRFSPASAPLA---LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P++A      L + PTREL  QV +  + L   T + V + IGG+ V  +   L+
Sbjct: 245 ---YKPSAAQAVTRVLVLVPTRELGAQVYQVSKQLTQFTSIEVGIAIGGLDVKAQEAVLR 301

Query: 123 NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               +V+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S  K R+
Sbjct: 302 TNPDVVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKTRQ 361

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIV 236
            ++FSAT++  +  LA       V+V +   N Q    + R   + +     +DR+  + 
Sbjct: 362 TMLFSATMTDQVKDLAAVSLTKPVKVFV--NNNQTVAFNLRQEFIRIREGREADREPLLA 419

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  
Sbjct: 420 ALICRTFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQSQRLESLKQFKDEQVD 479

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V IATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAG+ G+SV
Sbjct: 480 VLIATDVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGKAGVSV 528


>gi|29841421|gb|AAP06453.1| similar to NM_019693 HLA-B associated transcript 1 in Homo sapiens
           [Schistosoma japonicum]
          Length = 410

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 181/345 (52%), Gaps = 21/345 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F +A    L  E +     +
Sbjct: 57  AIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGE-----A 111

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               L +  TRELA Q+ +E E +      + V V  GG+ + ++   L ++  HIVVGT
Sbjct: 112 NTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+ D +R K L + H+K  ++DE D+MLD L  R D++ I   +P +++++MFSAT+S
Sbjct: 172 PGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVMMFSATMS 231

Query: 191 PAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             I  + +N+ +D + + I +++       RQH       V V  ++++  +  +L    
Sbjct: 232 KEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHY------VKVKENEKNRKLFELLDELQ 285

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  +        ++L +  F  +A+   ++Q+ER    Q  ++ + R+ +AT++
Sbjct: 286 FNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVATNL 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RG+D+  + +V + ++  + +  LHR  R GR G KG+++  I
Sbjct: 346 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 390


>gi|60594464|pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
          Length = 391

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 22  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 74

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 75  GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 134

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 135 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 194

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 195 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 253

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 313

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 314 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358


>gi|142982611|sp|P0C2N8|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
          Length = 829

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 173/338 (51%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL     + P  
Sbjct: 307 GLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL-----YRPKK 361

Query: 74  APLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P    + + PTRELA+Q       L + T +   + +GG+S+  +  +L+    +V+ T
Sbjct: 362 VPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIAT 421

Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT++
Sbjct: 422 PGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 481

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHGAKNA 247
            ++  L +      VR+   S+ +    +    V +     S R+  +++I +    +  
Sbjct: 482 SSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTIYTERV 541

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   +    +   +          L G ++Q +R  +++  RDG+    +ATD+A+RG
Sbjct: 542 IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRG 601

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  ++ VI+ E    PE  +HR GRT RAGR G ++
Sbjct: 602 LDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAI 639


>gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B associated transcript 1 [synthetic construct]
 gi|60654019|gb|AAX29702.1| HLA-B associated transcript 1 [synthetic construct]
 gi|60654021|gb|AAX29703.1| HLA-B associated transcript 1 [synthetic construct]
          Length = 429

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658650|emb|CAZ29702.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 875

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 38/370 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-----ALAST 61
            P  I   + +  + + T +Q       L  +D++  AQTGSGKT +F L     A A  
Sbjct: 84  FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIVHAKAQP 143

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L   D       P+ L + PTRELA QV +  E      G   A   GG S   +   L
Sbjct: 144 SLKRGD------GPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL 197

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  ++      R+
Sbjct: 198 GQSPEVVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQ 257

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDI-----DYRAVLVALS 229
            LM+SAT    +  LA+++  D +++N+ S         RQH +I      ++ +L  L+
Sbjct: 258 TLMWSATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLN 317

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
             DNA V           +VF  T+       + L +  F   A+ G+  Q+ER  AL  
Sbjct: 318 SFDNARV-----------LVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRAL-- 364

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
             D    V +ATDVA+RG+D+ D+  +I+ +  S  E+ +HR GRTGR+ +KG +     
Sbjct: 365 --DSHISVLVATDVASRGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFS 422

Query: 350 QNMQRRAERL 359
               R A  L
Sbjct: 423 AKQPRLAREL 432


>gi|4758112|ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens]
 gi|18375623|ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens]
 gi|55742824|ref|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa]
 gi|114050801|ref|NP_001040608.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
 gi|166429536|ref|NP_001107635.1| spliceosome RNA helicase DDX39B [Pan troglodytes]
 gi|126309517|ref|XP_001368591.1| PREDICTED: similar to nuclear RNA helicase (DEAD family)
           [Monodelphis domestica]
 gi|194223324|ref|XP_001917652.1| PREDICTED: HLA-B associated transcript 1 [Equus caballus]
 gi|2500529|sp|Q13838|DX39B_HUMAN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=ATP-dependent
           RNA helicase p47; AltName: Full=DEAD box protein UAP56;
           AltName: Full=HLA-B-associated transcript 1 protein
 gi|38502870|sp|P60024|DX39B_PANTR RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|47117788|sp|Q29024|DX39B_PIG RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|61217531|sp|Q5RE47|DX39B_PONAB RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|61217533|sp|Q5TM17|DX39B_MACMU RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|587146|emb|CAA85523.1| nuclear RNA helicase (DEAD family) [Homo sapiens]
 gi|6624728|emb|CAB63856.1| putative RNA helicase [Sus scrofa]
 gi|12653187|gb|AAH00361.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|15277213|dbj|BAB63306.1| putative ATP-dependent RNA helicase [Homo sapiens]
 gi|15278164|gb|AAH13006.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|18181952|dbj|BAB83886.1| BAT1 [Pan troglodytes]
 gi|27544432|dbj|BAC54953.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|32127769|dbj|BAC78161.1| ATP-dependent RNA helicase [Pan troglodytes]
 gi|32880161|gb|AAP88911.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|55700773|dbj|BAD69728.1| HLA-B associated transcript-1 [Macaca mulatta]
 gi|55726381|emb|CAH89960.1| hypothetical protein [Pongo abelii]
 gi|55961688|emb|CAI18280.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|56207984|emb|CAI18634.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|57209767|emb|CAI41922.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|61362641|gb|AAX42257.1| HLA-B associated transcript 1 [synthetic construct]
 gi|61362649|gb|AAX42258.1| HLA-B associated transcript 1 [synthetic construct]
 gi|86197992|dbj|BAE78637.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|90085292|dbj|BAE91387.1| unnamed protein product [Macaca fascicularis]
 gi|90960864|dbj|BAE92779.1| nuclear RNA helicase [Pan troglodytes]
 gi|90960868|dbj|BAE92782.1| nuclear RNA helicase [Pan troglodytes]
 gi|119623809|gb|EAX03404.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623812|gb|EAX03407.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623813|gb|EAX03408.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623814|gb|EAX03409.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623815|gb|EAX03410.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623816|gb|EAX03411.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|119623818|gb|EAX03413.1| hCG2005638, isoform CRA_a [Homo sapiens]
 gi|123981956|gb|ABM82807.1| HLA-B associated transcript 1 [synthetic construct]
 gi|123996783|gb|ABM85993.1| HLA-B associated transcript 1 [synthetic construct]
 gi|150439288|emb|CAI17664.2| HLA-B associated transcript 1 [Homo sapiens]
 gi|162138207|gb|ABX82809.1| HLA-B-associated protein 1 [Sus scrofa]
 gi|168984808|emb|CAQ09974.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|168985556|emb|CAQ10634.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|168986089|emb|CAQ07176.1| HLA-B associated transcript 1 [Homo sapiens]
 gi|261859894|dbj|BAI46469.1| HLA-B associated transcript 1 [synthetic construct]
 gi|266634526|dbj|BAI49420.1| HLA-B associated transcript 1 [Microcebus murinus]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|225442993|ref|XP_002268833.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743441|emb|CBI36308.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 179/338 (52%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L   STL     +  P +
Sbjct: 61  SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL---STL----QQIEPVA 113

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             +A L +  TRELA Q+  E E        + VAV  GGVS+   +  L+N   HIVVG
Sbjct: 114 GQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVG 173

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L + H++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 174 TPGRILALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 233

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +   L  L +++  + ++L        
Sbjct: 234 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDALDFNQV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   + Q+ER    +  ++G  R+ +ATD+  RG
Sbjct: 293 VIFVKSVSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 353 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 390


>gi|50307015|ref|XP_453485.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74606431|sp|Q6CRF4|DBP4_KLULA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49642619|emb|CAH00581.1| KLLA0D09504p [Kluyveromyces lactis]
          Length = 770

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 187/359 (52%), Gaps = 18/359 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++P  +   + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + +  
Sbjct: 42  LFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIE 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  +++      AL I+PTRELA+Q+   L  +   T     + IGG  V  E+  
Sbjct: 102 KLYRE--KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKER 159

Query: 121 LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           + +  +I++GTPGR+  H+ +  G N S+L+ +VLDEAD  LD+GF+  ++ I+++ P  
Sbjct: 160 I-SRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS 218

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV------NIASENRQHSDIDYRAVLVALSDRDN 233
           R+ L+FSAT S ++  LA+    D  +V      N  S +     +    + V L D+ +
Sbjct: 219 RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++ H     IVF S+   V      F K+  +    ++ L G   Q  R+  L  
Sbjct: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKL--QPGISLMHLHGRQKQTARTETLDK 336

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               +     +TDV ARGID P ++ VI  +   + +  +HR GR  R G++G S+ ++
Sbjct: 337 FSRAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIML 395


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 165/337 (48%), Gaps = 17/337 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPLA 77
           G    T VQ+A +   L  KDVLV A TG+GKT A+ L L+  LL +   RF        
Sbjct: 22  GMAAPTPVQQAAIPAILDGKDVLVRAPTGTGKTAAYALPLSQKLLKSRKPRF-------V 74

Query: 78  LAIAPTRELAVQVGR-------ELEWLYAKTGVVVAVCIGGVSVHRERRDLQ--NGAHIV 128
           L + PTREL +QV +       E +    +T V +    GG     +   L    G  I+
Sbjct: 75  LVLVPTRELVLQVEKVFRTCLEESKKGQKQTAVTLVPLFGGSDRAEQEHFLAQATGRRIL 134

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +  +  ++S    +VLDE D +    F++D E +L   P  R+ L+ SAT
Sbjct: 135 IATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLSYLPSMRQTLVLSAT 194

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              ++ +   N     V ++I    ++   I   A+ +  S +   I           +I
Sbjct: 195 QPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAALFLDPSQKPGFIKEFFSRAPKMRSI 254

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+A   +   +L +       L G+++Q +R++ +     GR  + +ATDVAARG+
Sbjct: 255 IFVRTKAEADQLAAILKKARLAAAPLHGDIAQDKRTSTVASFESGRLFILVATDVAARGL 314

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+P ++ VI+ ++   PE  LHR GRTGR G KG ++
Sbjct: 315 DVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSAL 351


>gi|301789323|ref|XP_002930057.1| PREDICTED: spliceosome RNA helicase BAT1-like [Ailuropoda
           melanoleuca]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|194743072|ref|XP_001954024.1| GF18065 [Drosophila ananassae]
 gi|190627061|gb|EDV42585.1| GF18065 [Drosophila ananassae]
          Length = 678

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 199 AVQEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 256

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 257 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 316

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 317 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAK 376

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 377 IDALSKLALKAEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 435

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 436 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 495

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 496 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 536


>gi|62177121|ref|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus familiaris]
 gi|61217540|sp|Q5WR10|DX39B_CANFA RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|39540669|gb|AAR27886.1| BAT1 [Canis lupus familiaris]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|84994990|ref|XP_952217.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302378|emb|CAI74485.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 648

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/347 (33%), Positives = 182/347 (52%), Gaps = 22/347 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-- 70
           + L  +GYV LT VQ  +L   L  K++++ + TGSGKT+ F L     L  E   +S  
Sbjct: 29  KVLKAKGYVYLTKVQSKVLPLALSGKNLVIQSPTGSGKTLCFLLPAVKHLFDEG--YSGN 86

Query: 71  -PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG--A 125
            P  A L   + +APTRELA Q+  +++ L     +    CIGGV   R++ D +N    
Sbjct: 87  LPIDANLLGCICLAPTRELASQIALQMKDLANPLKLNSGCCIGGV---RDKYDKKNANRL 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI+ GTPGR+   +  + L  +H +K +++DEAD ++D+GFRDDI  I+D  P   + L 
Sbjct: 144 HILTGTPGRILALLSSQSLPETHNIKILIMDEADRLIDVGFRDDIISIVDFLPNDLQFLF 203

Query: 185 FSATISPAITTLA----KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           FSATI  ++  L     KN   + V +   S+    S++    VL++   + +A+  IL 
Sbjct: 204 FSATIKSSLKELCDILLKNVSYELVCLGSDSDGISESNLRQELVLMSPKLKLSALFYILS 263

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS---GELSQQERSNALQMMRDGRARV 297
            +  K  IVF ST   + RF+  + + L   V ++   G+ SQ +R          +   
Sbjct: 264 NNQNKRIIVFLST-CKLVRFSYEVFKRLIPAVPMTELHGKQSQNKRLTQFTRFAAKQNHG 322

Query: 298 CI-ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           CI  TD+AARGID P +++V+  +L  +     HR GR+GR   +G 
Sbjct: 323 CIFTTDIAARGIDFPAVDIVVQFDLPDSLNTYTHRVGRSGRLSVEGF 369


>gi|3775995|emb|CAA09200.1| RNA helicase [Arabidopsis thaliana]
          Length = 363

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/246 (36%), Positives = 144/246 (58%), Gaps = 4/246 (1%)

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL   P KR+ +MFSAT+   I
Sbjct: 1   RIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWI 60

Query: 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVF 250
            +L K Y  + + +++  ++ Q     I   ++      R + I  +++ HG     IVF
Sbjct: 61  RSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVF 120

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R    LA+  ++  AL G++SQ +R   L   RDG   + +ATDVAARG+D+
Sbjct: 121 TQTKRDADRLAFGLAKS-YKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDV 179

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+++LVIH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + +E        
Sbjct: 180 PNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNEL 239

Query: 371 PAPSVE 376
           P+ +VE
Sbjct: 240 PSIAVE 245


>gi|254675193|ref|NP_001028466.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
 gi|123227901|emb|CAM21460.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
 gi|127799123|gb|AAH66017.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
 gi|148676452|gb|EDL08399.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
 gi|161899636|gb|AAI32352.2| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 [Mus musculus]
          Length = 687

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 189/385 (49%), Gaps = 44/385 (11%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 112 PHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCVPVVQSLQALTS 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 172 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 231

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K L+ + ++ +++DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 232 ILISTPGRLVDHIKSTKNLHFNRIRWLIVDEADRILDLGFEKDITVILNAVNAECQKRQN 291

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-----------------IDYRAVL 225
           ++ SAT++  +T L      + V +++  +N    +                 +D   VL
Sbjct: 292 VLLSATLTEGVTRLVDISLHNPVSISVLDKNCNQPNPKEVASIQLNSFAIPESLDQHVVL 351

Query: 226 VALSDR----DNAIVNILRYHGAKNAIVFCSTRASV----SRFTKVL--------AEHL- 268
           V    R       I+   ++   +  IVF S+   V    S F   L        +EHL 
Sbjct: 352 VPSKLRLVCLAAFILQKCKFEKNQKMIVFFSSCELVEFHYSLFLHTLLCHSGTPTSEHLP 411

Query: 269 -----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
                 + + L G + Q+ER++           V + TDVA+RG+DLP +  ++     S
Sbjct: 412 SASWPLKFLRLHGNMEQEERTSVFHEFSHSETGVLLCTDVASRGLDLPQVTWIVQYSAPS 471

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVI 348
           +P   +HR GRT R G  G S+ ++
Sbjct: 472 SPAEYIHRIGRTARIGCHGSSLLIL 496


>gi|120436995|ref|YP_862681.1| ATP-independent RNA helicase DbpA [Gramella forsetii KT0803]
 gi|117579145|emb|CAL67614.1| ATP-independent RNA helicase DbpA [Gramella forsetii KT0803]
          Length = 442

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 177/330 (53%), Gaps = 20/330 (6%)

Query: 23  LTSVQEAILNPDLRE--------KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L  ++ A LNP  +E        ++ ++ + TG+GKT+AF L L   L  E         
Sbjct: 18  LKKLKIAKLNPMQKEAGTAIKSSRNTILLSPTGTGKTLAFLLPLLEDLDPEVFNVQ---- 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ + P+RELA+Q+ + +  +   TG       GG S  ++R +L++   I++GTPGR
Sbjct: 74  --AMILVPSRELAIQIEQVIREM--GTGFKANAVYGGRSSAKDRLELKHPPAIIIGTPGR 129

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R +  +   +K ++LDE D+ L++GF++++  I D  P   + ++ SAT +  I 
Sbjct: 130 LADHLRRETFSSEAIKIIILDEFDKSLEIGFKEEMSEIFDLLPAIEKRILTSATQNVEIP 189

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
                  KD  +VN  SE  + + +  + V     D+ ++++N+L + G K  I+FC+ +
Sbjct: 190 GFVG--MKDPKKVNYLSE--EVTLLKVKTVNSTNKDKLDSLINLLAHIGNKPGIIFCNFK 245

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            S+   +  L+E+        G + QQ+R  AL   R+G  R+ IATD+AARGID+P L 
Sbjct: 246 DSIQFVSDFLSENNIPHGTFHGGMEQQDRERALIKFRNGTHRIIIATDLAARGIDIPALN 305

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            +IH +L        HR+GRT R   KG +
Sbjct: 306 FIIHYQLPLKEAEFTHRNGRTARMEEKGTA 335


>gi|195330913|ref|XP_002032147.1| GM26397 [Drosophila sechellia]
 gi|194121090|gb|EDW43133.1| GM26397 [Drosophila sechellia]
          Length = 680

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 201 AIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 258

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 259 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 318

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 319 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 378

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 379 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 437

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 438 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 497

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 498 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 538


>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
 gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
          Length = 782

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 171/333 (51%), Gaps = 7/333 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+A+ 
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDGPIAVI 331

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGRL DH+
Sbjct: 332 VCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I  LA++
Sbjct: 392 KKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARD 451

Query: 200 YQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIV-NILRYHGAKNAIVFCSTRA 255
              D +RV   +I   N   + I    +L +   + N +   ++ +  + + ++F + +A
Sbjct: 452 ILIDPIRVVQGDIGEANEDVTQI--VEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +       L +    +  L G++ Q E +  +   +     V +ATDVAARG+D+P ++ 
Sbjct: 510 NAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +++ + +   HR GRTGRAG KG++  ++
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLL 602


>gi|51556985|gb|AAU06262.1| DEAD box DNA helicase [Plasmodium falciparum]
          Length = 516

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 165/307 (53%), Gaps = 11/307 (3%)

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           AS    L + PTREL +QV  E++       +      GGV  + +  +L+ GA I+V T
Sbjct: 199 ASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVAT 258

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT   
Sbjct: 259 PGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPE 318

Query: 192 AITTLAKNY-QKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI- 248
            +  LA ++   D V++ I  +E   + +I+   ++ +  D    +++ L+ +   N I 
Sbjct: 319 QVRKLAYDFCAYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKIL 378

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+ +     K L  H +  +++ G+  Q+ER   L   +  R  + +ATDVA+RG+
Sbjct: 379 IFCDTKRNCDNLGKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGL 438

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV------FVIPQNMQRRAE--RLF 360
           D+ ++ +VI+ ++ +  E+ +HR GRTGRAG+KG S+      + +PQ ++   E  +L 
Sbjct: 439 DIKNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLL 498

Query: 361 REANVSV 367
            + N +V
Sbjct: 499 NKTNQTV 505


>gi|46115318|ref|XP_383677.1| hypothetical protein FG03501.1 [Gibberella zeae PH-1]
          Length = 1481

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/360 (32%), Positives = 180/360 (50%), Gaps = 21/360 (5%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           P V+    ++  +  +T VQ + L+  L  +  D LV A+TG+GKT+AF L    T++  
Sbjct: 86  PIVVRTITNDMKFEFMTPVQASTLDELLPPQRNDCLVQARTGTGKTMAFLLPALQTMI-- 143

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
           N +    S    L I+PTRELA Q+  E   +          C+ GG +  RE R +  G
Sbjct: 144 NQKRGSGSGISLLVISPTRELAQQIAAEATRVLKNLPQYRVQCVMGGTNKDREERAILGG 203

Query: 125 AHIVVGTPGRLCDHIRGKGLNIS--HLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
             I++ TPGRL DH+  + +  S  H+  +VLDEAD +LD+GF  D+  I+   P K   
Sbjct: 204 CEILIATPGRLLDHMSSEDIRYSMRHVDTLVLDEADRLLDMGFLKDLRSIVKQLPDKAKT 263

Query: 180 -RRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNA 234
            R+ ++FSATI+P +  +A+   + Q   +      E   H  +    V V   SD   A
Sbjct: 264 NRQGMLFSATIAPHVKQVAELVCSPQYKFISTIPEGEVNTHERVPQFLVQVPTFSDLAPA 323

Query: 235 IVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQ 288
           +V ++R    +     AI+F +T A    +T +L     L  V  L   ++Q +R+    
Sbjct: 324 MVGVVREEATRGQDFKAILFATTAAIADFYTSILVATPGLPPVSVLHSRMTQSKRTRITN 383

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  R  + +ATDV ARG+D P +  VI   L S+ E+ +HR GRT RA   G  + ++
Sbjct: 384 EYRTARNAILVATDVVARGMDFPGVTSVIQVGLPSDKESYIHRLGRTARADADGRGILIV 443


>gi|9790069|ref|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus]
 gi|51592092|ref|NP_579834.2| spliceosome RNA helicase Ddx39b [Rattus norvegicus]
 gi|61217662|sp|Q9Z1N5|DX39B_MOUSE RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56; AltName: Full=HLA-B-associated transcript
           1 protein
 gi|61252099|sp|Q63413|DX39B_RAT RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=ATP-dependent
           RNA helicase p47; AltName: Full=DEAD box protein Uap56
 gi|4809332|gb|AAD30177.1|AC007080_3 BAT1 [Mus musculus]
 gi|4235116|gb|AAD13115.1| nuclear RNA helicase Bat1 [Mus musculus]
 gi|15029704|gb|AAH11067.1| HLA-B-associated transcript 1A [Mus musculus]
 gi|17529570|emb|CAC85694.1| putative RNA helicase [Rattus norvegicus]
 gi|22137623|gb|AAH24859.1| HLA-B-associated transcript 1A [Mus musculus]
 gi|26341686|dbj|BAC34505.1| unnamed protein product [Mus musculus]
 gi|26353988|dbj|BAC40624.1| unnamed protein product [Mus musculus]
 gi|32964852|gb|AAP91685.1| HLA-B associated transcript 1 [Mus musculus]
 gi|32964854|gb|AAP91686.1| HLA-B associated transcript 1 [Mus musculus]
 gi|51329823|gb|AAH80243.1| HLA-B associated transcript 1 [Rattus norvegicus]
 gi|149028103|gb|EDL83554.1| HLA-B-associated transcript 1A, isoform CRA_a [Rattus norvegicus]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|327266482|ref|XP_003218034.1| PREDICTED: spliceosome RNA helicase BAT1-like [Anolis carolinensis]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|294954212|ref|XP_002788055.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239903270|gb|EER19851.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 731

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 188/364 (51%), Gaps = 23/364 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P  + EAL    +   T +Q   +   L  +DVL  A TGSGKT+A+ + L   ++    
Sbjct: 202 PLAVKEALKHAKFEKPTPIQCVAIPAALSGRDVLAIADTGSGKTLAYLMPLIMHIIYHKE 261

Query: 67  -----DRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                DR +P     + P AL + PTRELAVQ+ + +  L    G+      GG+S + +
Sbjct: 262 HADLADRPAPTKDHPACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYEQ 321

Query: 118 RRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKA-VVLDEADEMLDLGFRDDIEFILDS 175
            +DL+ G   IVVG PGR  D ++  G++++   A VVLDEAD ML++GF + +  ++  
Sbjct: 322 FKDLRKGTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQR 381

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNA 234
               R+ ++FSAT+ P I  LA+   +D VR+ + AS     +       +V + ++D+ 
Sbjct: 382 VRPDRQTMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDDK 441

Query: 235 -------IVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERS 284
                  + +IL     ++   ++F + ++  S     + E +     AL G+  Q +R 
Sbjct: 442 FNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDRM 501

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             +   R  + +V +ATDVA+RG+D+P ++ VI  ++S+      HR GRTGRAG  G +
Sbjct: 502 KIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGRTGRAGHTGHA 561

Query: 345 VFVI 348
             ++
Sbjct: 562 TTLL 565


>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 720

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 169/343 (49%), Gaps = 16/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----RFSPAS- 73
           G+   T VQ  ++   LR +D+L  A+TGSGKT  F L +   L   +     R  P + 
Sbjct: 152 GFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVERLCQASHVRSRRKDPHTG 211

Query: 74  -------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL + PTRELAVQ  + L        +   + +GG    ++  +++    
Sbjct: 212 RITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVVGGFDAQKQASEMRAQPD 271

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKRRMLM 184
           +V+ TPGR+ D +     +++   + VVLDE D +L++GFRD+ +  I     + R+ +M
Sbjct: 272 VVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDECLTIIQKHCNRSRQTMM 331

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHG 243
           FSAT++  +  LAK      V +     NR    +    + V +   R+  ++     H 
Sbjct: 332 FSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVTSEQQREATLLAACTKHF 391

Query: 244 AKNAIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K  ++FC+ + +  R   +L      +   L G LSQQ+R  AL     G+A   I TD
Sbjct: 392 TKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQRVKALADFESGKATHLICTD 451

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARG+DLP +E VI+ EL  +    +HR GRT RAG  G SV
Sbjct: 452 LAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSV 494


>gi|168021219|ref|XP_001763139.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685622|gb|EDQ72016.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 494

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 202/361 (55%), Gaps = 18/361 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  +    AL + G+ ++T +Q   +   L  +DVL +A+TGSGKT++F +     
Sbjct: 6   FESLPVSEPTKNALKDTGFSHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVVPAVEL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L   +  F P +    + I+PTRELA+Q   V R++   + +T  +V   +GG +   E 
Sbjct: 66  LF--HAHFMPRNGAGVIIISPTRELAMQIYGVARDILKYHKQTHGIV---MGGANRRTEA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G + +V TPGRL DH++  KG    +LK +V+DEAD +L++GF ++++ I+   P
Sbjct: 121 EKLAKGVNFLVATPGRLLDHLQNTKGFIFKNLKCLVIDEADRILEIGFEEEMKQIIKLLP 180

Query: 178 KKRRMLMFSATISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           K+R+ ++FSAT +  +  LA+ +++K  + + +  + R  + ++       +V+ ++R  
Sbjct: 181 KERQTVLFSATQTTKVEDLARVSFKKAPLYIGV-DDGRSKATVEGLEQGYCVVSSAERFL 239

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV   +++L       + + G+  QQ+R++      + 
Sbjct: 240 LLFTFLKKNLKKKIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFEFCNA 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQN 351
              + + TDVAARG+D+P ++ +I  +   +P   +HR GRT R  G +G + +F+IP+ 
Sbjct: 300 EKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGSQGRALLFLIPEE 359

Query: 352 M 352
           +
Sbjct: 360 L 360


>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
 gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
          Length = 805

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 188/384 (48%), Gaps = 14/384 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL     + P   
Sbjct: 290 LASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLL-----YRPKKV 344

Query: 75  PLA-LAI-APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P   +AI  PTRELAVQ       L + T +  A+  GG S   +   L+    +V+ TP
Sbjct: 345 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRPDVVIATP 404

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++FSAT++ 
Sbjct: 405 GRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFSATMTS 464

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAI 248
           ++  L +      VR+ + ++    + +    V +     D     ++ I      +  I
Sbjct: 465 SVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVI 524

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +    R   V A    +   L G +SQ++R  +++  R G++   +ATDVA+RG+
Sbjct: 525 VFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDVASRGL 584

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANV 365
           D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +    + ++A +  R+   
Sbjct: 585 DIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKASRDQGA 644

Query: 366 SVVWEPAPSVEAIRERDAQRILQD 389
            VV    P  E  R     + L+D
Sbjct: 645 KVVSRQVPIEETDRWMKKIKDLED 668


>gi|294954210|ref|XP_002788054.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239903269|gb|EER19850.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 733

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 188/364 (51%), Gaps = 23/364 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN- 66
           P  + EAL    +   T +Q   +   L  +DVL  A TGSGKT+A+ + L   ++    
Sbjct: 204 PLAVKEALKHAKFEKPTPIQCVAIPAALSGRDVLAIADTGSGKTLAYLMPLIMHIIYHKE 263

Query: 67  -----DRFSPA----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                DR +P     + P AL + PTRELAVQ+ + +  L    G+      GG+S + +
Sbjct: 264 HADLADRPAPTKDHPACPFALVLCPTRELAVQIEKTIYKLGKYIGITSTTLAGGLSKYEQ 323

Query: 118 RRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKA-VVLDEADEMLDLGFRDDIEFILDS 175
            +DL+ G   IVVG PGR  D ++  G++++   A VVLDEAD ML++GF + +  ++  
Sbjct: 324 FKDLRKGTCDIVVGNPGRCIDMVKEHGMSLTGDTAWVVLDEADRMLNMGFENQVRSLVQR 383

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNA 234
               R+ ++FSAT+ P I  LA+   +D VR+ + AS     +       +V + ++D+ 
Sbjct: 384 VRPDRQTMLFSATMPPKIERLARYIMQDPVRLFVGASATTGGAAQAVTQDVVVVEEKDDK 443

Query: 235 -------IVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERS 284
                  + +IL     ++   ++F + ++  S     + E +     AL G+  Q +R 
Sbjct: 444 FNWLSENLPHILDDAQEEDGQVLIFVNQKSGASELAVAIREFMSLPCEALHGDSDQNDRM 503

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             +   R  + +V +ATDVA+RG+D+P ++ VI  ++S+      HR GRTGRAG  G +
Sbjct: 504 KIMADFRSRKTKVLVATDVASRGLDIPAVKEVICYDMSNTLTTHTHRLGRTGRAGHTGHA 563

Query: 345 VFVI 348
             ++
Sbjct: 564 TTLL 567


>gi|156400942|ref|XP_001639051.1| predicted protein [Nematostella vectensis]
 gi|156226176|gb|EDO46988.1| predicted protein [Nematostella vectensis]
          Length = 285

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 153/279 (54%), Gaps = 7/279 (2%)

Query: 53  AFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF L + ++++     +  FS    P A+ IAPTRELA Q+  E       T +   VC 
Sbjct: 5   AFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCY 64

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGVSV  + R LQ+G +++VGTPGRL D I    +++  L+ ++LDEAD MLD+GF   I
Sbjct: 65  GGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAI 124

Query: 170 EFILDS--SPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++S   P K  R+ LMFSAT    I  LA ++  D + + +       SDI+   + 
Sbjct: 125 RRIVESMGMPDKSERQTLMFSATFPEEIQRLAGDFLNDYLFLTVGRVGGTTSDIEQTVIE 184

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  +++ + +  IL   G    +VF  ++ S       L+   F   ++ G+  QQER  
Sbjct: 185 VTDNEKRDRLTQILGDAGTDRTLVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREE 244

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
           AL   R GR  V IAT+VAARG+D+ D++ VI+ +L S+
Sbjct: 245 ALDDFRKGRCPVLIATNVAARGLDIDDVKHVINFDLPSD 283


>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
 gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 411

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 181/354 (51%), Gaps = 10/354 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           ++L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     L+    RF   
Sbjct: 14  DSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPALQHLIDFPRRFDGQ 73

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  L L   PTRELA Q+ R    L    G+ +++  GGV    +   L     I++ TP
Sbjct: 74  ARVLVLT--PTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEALAGNVDIMIATP 131

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     + + ++ +V+DEAD MLD+GF   ++ I   +   ++ ++FSAT+   
Sbjct: 132 GRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCKQKMLFSATLEGG 191

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----IVNILRYHGAKNA 247
            +   A+    D V V++ +   + + I      + L+D        + N+LR    K  
Sbjct: 192 GVQRFARELLDDPVTVDVEAPRSEKAKIHQ---WIHLADDQTHKFALLCNLLRQESVKRT 248

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  TR  V+    +L +       + G++ Q++R  AL     G   + +ATDVAARG
Sbjct: 249 IVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDILLATDVAARG 308

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   ++ R
Sbjct: 309 IDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVSKIER 362


>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 421

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 176/357 (49%), Gaps = 9/357 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   +   G+   T +Q   +   L+ +DV+  AQTG+GKT AF L +   LL   D  +
Sbjct: 12  INAGIKSCGFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPILQRLL---DSRA 68

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               P+  L +APTRELA+Q+    +    + G+  +   GGV  +  + +    A +VV
Sbjct: 69  TGQGPIRCLVLAPTRELALQIQETFDVFGRQAGIRSSCVFGGVGFN-PQINAARKATVVV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
             PGRL   ++   + + H+  +VLDEAD MLD+GF  D++ IL   P KR+ L+FSAT+
Sbjct: 128 ACPGRLVALLQQGDIRLDHVDTLVLDEADRMLDMGFMPDLKRILSRLPAKRQNLLFSATM 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA     D  RV +++     S +      VA   +   +  +L     ++ +V
Sbjct: 188 PADIRKLADTILVDPARVQVSNTVPVES-VTQTFYPVADHLKGGLLEALLGSMERESVLV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       K L         L G +SQ +R  AL   R G   + +ATD+AARGID
Sbjct: 247 FTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIMVATDIAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREA 363
              +  VI+ +     E   HR GRTGRAGR G ++ +I +    + R  ER+ R +
Sbjct: 307 CDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRDIERVLRRS 363


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 177/361 (49%), Gaps = 7/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + +AL   G+   T++Q       L   D++  A+TGSGKT+ F L     + A+ 
Sbjct: 175 FPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAMIHIRAQ- 233

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL  Q+  +     +   +      GGV    ++  ++NG  
Sbjct: 234 PLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVE 293

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I +  PGRL D +     N+S +  +VLDEAD MLD+GF   I  ++      R+ L++S
Sbjct: 294 ICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWS 353

Query: 187 ATISPAITTLAKNYQKD-AVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNIL---R 240
           AT    +  LA++  K+  + +N+ S +  +   +I     +V  S++   +   L    
Sbjct: 354 ATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMFLGQVM 413

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A   ++FC T+      TK L    +  + + G+  Q+ER+  L   R G + + IA
Sbjct: 414 VESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIA 473

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D+  VI+ +  +  E+ +HR GRTGRAG  G+S+     +  R A  L 
Sbjct: 474 TDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLI 533

Query: 361 R 361
           +
Sbjct: 534 K 534


>gi|148907401|gb|ABR16834.1| unknown [Picea sitchensis]
          Length = 286

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 1/270 (0%)

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V V  C+GG S+  + R LQ G H+VVGTPGR+ D +R + L    +K  VLDEADEML 
Sbjct: 10  VRVHACVGGTSIREDLRILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLS 69

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
            GF+D I  I    P   ++ +FSAT+ P    + + +  + VR+ +  +      I   
Sbjct: 70  RGFKDQIYDIFQLLPSNLQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQF 129

Query: 223 AVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D + + + ++        +++F +TR  V   T  +      V A  G++ Q 
Sbjct: 130 YVNVEREDWKLDTLCDLYETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQN 189

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   ++  R G +RV I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRK
Sbjct: 190 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 249

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           G+++  I ++ +R  + + R  NV V   P
Sbjct: 250 GVAINFITKDDERMLQDIQRFYNVVVEELP 279


>gi|182419538|ref|ZP_02950787.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237668934|ref|ZP_04528918.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376573|gb|EDT74148.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237657282|gb|EEP54838.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 408

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 201/392 (51%), Gaps = 18/392 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E L ++G  + TS+Q   + P +  KDV+  A TGSGKT+A+ L +   +   
Sbjct: 8   NLDSNIIEGLKKQGITDPTSIQATAITPAMENKDVIGEAFTGSGKTLAYLLPIFHKIDTS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  +++ L   + V V     IG V+++ + + L+ 
Sbjct: 68  KREMQ------AIVLAPTHELALQIEAQIKLLAENSSVPVTSFSVIGDVNINNQIKKLKE 121

Query: 124 -GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD       + I+ ++ + R++
Sbjct: 122 IKPHIIVGSTGRILDLIRKKKITAHTIKTIVIDEGDNLLDPKRAQITKDIIKTTMRDRQL 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSA+I P      +   K+ V +    +   + +I++   +    D+   +  I+   
Sbjct: 182 LVFSASIKPETLLTCERLMKEPVIIKSEEKAEMNPNIEHMLFVCDRRDKFETLRKIIVAA 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF ++   +   T  L  H     A++G +S+++R  A++  R+G+ ++ +++D
Sbjct: 242 KPEKAIVFVNSNEDIEMTTAKLNFHSKDCFAMNGHISKEDRKLAIESFRNGKIKILVSSD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQ-NMQRRAERL 359
           V ARG+D+  +  + H +L       LHR+GRT R    G+S+ +  + Q N+ ++ E+ 
Sbjct: 302 VTARGLDVEGVTHIFHLDLPLKVNEYLHRAGRTARGNNTGISIAIATVKQLNIIKKYEKE 361

Query: 360 F------REANVSVVWEPAPSVEAIRERDAQR 385
           F      +EA    + +     EA  ER+ ++
Sbjct: 362 FNIKFEEKEAFGGKILDKNIPSEAYNERNPKK 393


>gi|146319393|ref|YP_001199105.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321596|ref|YP_001201307.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752416|ref|YP_003025557.1| helicase [Streptococcus suis SC84]
 gi|253754242|ref|YP_003027383.1| helicase [Streptococcus suis P1/7]
 gi|253756176|ref|YP_003029316.1| helicase [Streptococcus suis BM407]
 gi|145690199|gb|ABP90705.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692402|gb|ABP92907.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816705|emb|CAZ52347.1| putative helicase [Streptococcus suis SC84]
 gi|251818640|emb|CAZ56475.1| putative helicase [Streptococcus suis BM407]
 gi|251820488|emb|CAR47236.1| putative helicase [Streptococcus suis P1/7]
 gi|292559021|gb|ADE32022.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
 gi|319758822|gb|ADV70764.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 447

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 173/338 (51%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL E  +V  T VQE ++   L  +D++  ++TGSGKT  F + +   L  E D+  
Sbjct: 12  IQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLNEELDQVQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
                 A+  AP+RELA Q+ +    L  ++ T V V   +GG   +R+   LQ +  HI
Sbjct: 72  ------AVITAPSRELATQIYQAARQLASHSDTEVRVTNYVGGTDKNRQIDKLQASQPHI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  + ++FSA
Sbjct: 126 VVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y  + V   I +       I+   +     DR+  I+ + +      A
Sbjct: 186 TIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQILEVTKLMQPYLA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +T+         L  +  +V  + G++  +ER   +  +++   +  +ATD+AARG
Sbjct: 246 MIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQYIVATDLAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +  VI+  +  +    +HR GRTGR G  G+++
Sbjct: 306 IDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAI 343


>gi|18424667|ref|NP_568964.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|16974623|gb|AAL31214.1| AT5g63120/MDC12_8 [Arabidopsis thaliana]
 gi|23308415|gb|AAN18177.1| At5g63120/MDC12_8 [Arabidopsis thaliana]
 gi|332010324|gb|AED97707.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 484

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 168/313 (53%), Gaps = 7/313 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAY-LLP 222

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A   ++   R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 223 ALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 282

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + TLA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402

Query: 238 ILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +L+    G+K  ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+
Sbjct: 403 LLKQLMDGSK-ILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRS 461

Query: 296 RVCIATDVAARGI 308
            +  ATDVAARG+
Sbjct: 462 PIMTATDVAARGL 474


>gi|71027833|ref|XP_763560.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350513|gb|EAN31277.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 894

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/356 (32%), Positives = 175/356 (49%), Gaps = 20/356 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-----LAST 61
           +P  I + L +R Y     +Q   +   +  +DV+  A+TGSGKT+AF L      L   
Sbjct: 424 LPDPILKILEKREYEKPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPGIRHVLDQP 483

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L E+D        + L IAPTREL +Q+  E        G+      GG  +  +   L
Sbjct: 484 PLRESDGM------IVLIIAPTRELVIQISNECAKFSKSVGLRTLAVYGGAGIGEQLNAL 537

Query: 122 QNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + GA IVVGTPGRL D +   +GK  N+  +  +VLDEAD M D+GF   I  I+ +   
Sbjct: 538 KRGAEIVVGTPGRLIDVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRP 597

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT    I  LAK      +++ +    +  S +D   V+  L+D    +  +
Sbjct: 598 DRQTALFSATFPLMIENLAKKILVKPLQIVVGQRGKSASQVDQHVVV--LNDDKKLLKLL 655

Query: 239 L---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                +H   N I+F +T+         L  + ++   L G + Q +R   L   R+G+ 
Sbjct: 656 KLLGEWHEHGNIIIFVNTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKK 715

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
            + IAT +AARGID+  + LVI+     + E+ +HR GRTGRAG  G S  F+ P+
Sbjct: 716 TILIATSIAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPE 771


>gi|297478376|ref|XP_002690065.1| PREDICTED: rCG25924-like [Bos taurus]
 gi|296484278|gb|DAA26393.1| rCG25924-like [Bos taurus]
          Length = 643

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 187/370 (50%), Gaps = 12/370 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+V+   + + G+   T +Q       L+  D++  AQTG+GKT+++   L    +
Sbjct: 244 FHCYPEVM-RNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSY---LMPGFI 299

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             + +    + P  L + PTRELA+QV  E    Y+  G+      GG     + +DL  
Sbjct: 300 HIDSQPVARNGPGMLVLTPTRELALQVDAECS-EYSYRGLKSVCIYGGGDRDGQIKDLSK 358

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           GA I++ TPGRL D      + +  +  +VLDEAD+MLD+GF   I + +LD  P  R+ 
Sbjct: 359 GADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQT 417

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILR 240
           +M SAT   A+  LA++Y K+ + V + + +        + ++V   D   + +   I  
Sbjct: 418 VMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDS 477

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IA
Sbjct: 478 MSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIA 537

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ +I +N  + A  L 
Sbjct: 538 TDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELI 597

Query: 360 --FREANVSV 367
                AN SV
Sbjct: 598 NILERANQSV 607


>gi|197100857|ref|NP_001126280.1| ATP-dependent RNA helicase DDX18 [Pongo abelii]
 gi|55730937|emb|CAH92187.1| hypothetical protein [Pongo abelii]
          Length = 670

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 195/347 (56%), Gaps = 10/347 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF L  A  L+ +  RF P 
Sbjct: 192 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF-LIPAVELIVK-LRFMPR 249

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 250 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINIIVATP 309

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL D ++   G    +L+ +V+DEAD +LD+GF ++++ I+   P +R+ ++FSAT + 
Sbjct: 310 GRLLDDMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 369

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV-NILRYHGAKNA 247
            +  LA+ + +K+ + V +  +++ ++ +D   +  +V  S++   ++   L+ +  K  
Sbjct: 370 KVEDLARISLKKEPLYVGV-DDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKL 428

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L      V+A+ G+  Q +R+       +  +   + T VAARG
Sbjct: 429 MVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTGVAARG 488

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           +D+P+++ ++  +   +P+  +HR GRT R   GR    + + P+ +
Sbjct: 489 LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEEL 535


>gi|162606504|ref|XP_001713282.1| DEAD box protein [Guillardia theta]
 gi|12580748|emb|CAC27066.1| DEAD box protein [Guillardia theta]
          Length = 386

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 180/350 (51%), Gaps = 7/350 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T VQ   +   L  KD+LV +QTGSGKT+A+ L L   LL + + + P      +
Sbjct: 21  GFKKATKVQVYTIPHFLIGKDLLVYSQTGSGKTLAYILPLLQKLLYKKNNYLP------I 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I P+REL  Q+    E +     + +A   GG+  + +   + +   I++ TPGRL + 
Sbjct: 75  IIVPSRELVFQISTTFETISCVFNIRIASLTGGIDPNVQLVMISSNPDIIISTPGRLVEI 134

Query: 139 IR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           ++  K L I     +VLDEAD+++   F+ +I  I   + K +++++FSAT+S  +  + 
Sbjct: 135 LKLTKNLEIKFCTDLVLDEADKLIHSDFKREINIINSKTNKNKKLMLFSATMSLGLEKIK 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
                + VR+ I        ++    +      ++  ++ ++     +  I F  T+   
Sbjct: 195 FFKISNPVRIIINQNFFISPNLIQNYIFCPFRYKEIYLLYLINEFYEEKLICFVETQKMT 254

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            + + +L +  F    + G LSQ ER + L    +G+ ++ +ATD+A+RG+D+  + L+I
Sbjct: 255 EKISILLKKFSFDCYIIHGSLSQNERIDTLSKFTNGKKKILVATDLASRGLDICAVSLII 314

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           + +     ++ +HR+GRTGRAGR G ++ +I Q   R  +++    N+ +
Sbjct: 315 NYDFPIYLKDYIHRTGRTGRAGRAGRAISLITQYDLRTFQKIESILNIKI 364


>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
 gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
          Length = 1676

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 15/350 (4%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + I   L+   + N T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 796  NLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 853

Query: 66   NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 854  ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 910

Query: 124  GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 911  RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 970

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
            ++FSAT++ ++  L +      VR+ + ++      +    V +     D  +  +L   
Sbjct: 971  MLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLC 1030

Query: 241  ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
               Y G    IVF   +    R   V      +   L G +SQ++R  +++  RDG    
Sbjct: 1031 KEVYTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNF 1088

Query: 298  CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +ATD+A+RG+D+  +E VI+ E   + E  +HR GRT RAGR G +  +
Sbjct: 1089 LLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTI 1138


>gi|326433402|gb|EGD78972.1| hypothetical protein PTSG_01945 [Salpingoeca sp. ATCC 50818]
          Length = 845

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 185/359 (51%), Gaps = 10/359 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K+F   P      + L++ G++  T +Q+A L   L  +DVL +A+TGSGKT+AF + +
Sbjct: 54  FKLFTEFPISNRTKKGLADAGFIKPTRIQKATLKHALAGRDVLGAAKTGSGKTLAFLIPV 113

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E  RFS      A+ ++PTRELA Q    L  +     +  A+ IGG +V  E+
Sbjct: 114 LEKLNRE--RFSRDLGIGAVVVSPTRELAQQTYNTLVQVATGHEMSCALFIGGNNVKIEK 171

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +    +I++ TPGRL  H+         +L+ +VLDEAD +LD GF+++++ I+   P
Sbjct: 172 -TMAATRNIIICTPGRLVQHMDETPNFGFDNLQVLVLDEADRLLDSGFKEEVDRIVSEMP 230

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236
             R+ L+FSAT +  +  LA+    + V +N+  +     + +    V V L ++ N + 
Sbjct: 231 PHRQTLLFSATQTAEVDELARLSLHNPVFINVHKDQAATPARLKQCYVEVPLHEKINLLY 290

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGR 294
           + +  H     +VF + R  V+   K+         +  L G  S   R   L+     +
Sbjct: 291 SFIESHKKHKTMVFLACRKQVNLLYKIFCRRKPGVSIFELVGRRSLHTRQETLRKFSKAK 350

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           A V + TDVAARG+D+P++  V+  +   + +  +HR GRT R G+ G ++ F++P  +
Sbjct: 351 AAVLLTTDVAARGLDIPNVNWVLQVDCPESVDTYIHRVGRTARFGKNGNAMLFLLPSEL 409


>gi|242064428|ref|XP_002453503.1| hypothetical protein SORBIDRAFT_04g006980 [Sorghum bicolor]
 gi|241933334|gb|EES06479.1| hypothetical protein SORBIDRAFT_04g006980 [Sorghum bicolor]
          Length = 539

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 185/360 (51%), Gaps = 9/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-ASTLLAE 65
           +P+ +   L   GY   T VQ  ++   +  + +LVSA TGSGKT +F + + A      
Sbjct: 144 LPEKLVHNLETAGYCMPTPVQMQVIPASMSNRSLLVSADTGSGKTASFLIPIIAHCSQVR 203

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++NG 
Sbjct: 204 SQESTSNQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLPQQIYRIENGI 263

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D +    ++++++   VLDE D +L+ GFRD    I  S  + + M MF
Sbjct: 264 ELIVGTPGRLIDLLMKHNVDLTYVSVFVLDEVDCLLERGFRDQAMQIFQSLSQPQVM-MF 322

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHG 243
           SAT+   +  ++ +  K+ + ++  + NR    +    + V    +   I  I+  + H 
Sbjct: 323 SATLHSEVEKMSNSLAKNVISISCGNPNRPTKSVKQVVIWVESKKKKQKIFEIMKSKQHF 382

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              A+VF S+R      ++ +      +VV++ GE + +ER   L+    G   V ++T 
Sbjct: 383 KPPAVVFVSSRVGADLLSEAITVATGLEVVSIHGEKTMKERRENLRRFLTGEVSVVVSTG 442

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM+V  +  N + R  R+F+E
Sbjct: 443 VLGRGMDLLKVRQVILFDIPNSIDEYIHQVGRASRMGEEGMAVVFV--NEEDR--RIFKE 498


>gi|224101199|ref|XP_002312182.1| predicted protein [Populus trichocarpa]
 gi|222852002|gb|EEE89549.1| predicted protein [Populus trichocarpa]
          Length = 592

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 197/371 (53%), Gaps = 31/371 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + + EAL+  G+   T VQ A +      KDV V A TGSGKT+AF + L   L   
Sbjct: 24  SISEPVLEALTNSGFDYCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL--- 80

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDL 121
             R S +  P   + + I+PTREL+ Q+    +   A  +     + +GG+ V  + + +
Sbjct: 81  --RRSSSPKPHQVMGIIISPTRELSSQIYNVAQPFIATLSNFKSMLLVGGMDVKADVKMI 138

Query: 122 QN-GAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +  GA++++GTPGRL D + R   L+  +L+ ++LDEAD +LD+GF+  +  I+   PK 
Sbjct: 139 EEEGANLLIGTPGRLFDIMDRVDVLDFRNLEVLILDEADRLLDMGFQKQLNSIISRLPKL 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASE---------------NRQHSDIDYRAV 224
           RR  +FSAT + A+  L+K   ++ V+V + +E               ++  S +    +
Sbjct: 199 RRTGLFSATQTEAVEELSKAGLRNPVKVEVRAETKSLNNSVSGQQLAPSKTPSGLLLEYL 258

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQ 280
                 + + +V++L  + +K  I++  T A V  +  VL      + F +++L G++ Q
Sbjct: 259 ECEADKKPSQLVDLLVKNKSKKIIIYFMTCACVDYWGVVLPRLTVLNGFSLISLHGKMKQ 318

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R  AL       + + + TDVAARG+D+P ++ ++  +   +P   +HR GRT R GR
Sbjct: 319 TAREKALTSFTSLTSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGR 378

Query: 341 KGMS-VFVIPQ 350
           +G S VF++P+
Sbjct: 379 QGSSIVFLLPK 389


>gi|238504232|ref|XP_002383347.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690818|gb|EED47167.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 696

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/366 (30%), Positives = 193/366 (52%), Gaps = 20/366 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L A   RF P +   A+
Sbjct: 229 GFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEMLSAL--RFKPRNGTGAI 286

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +++V TPGRL DH
Sbjct: 287 IVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDH 346

Query: 139 IRG-KGLNISHLKAVV---------LDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSA 187
           ++  +G    +L+ ++         +DEAD +L++GF D++  I    P + R+ ++FSA
Sbjct: 347 LQNTQGFVFKNLRTLISTINLFRIAIDEADRILEVGFEDEMRQIAKILPSENRQTMLFSA 406

Query: 188 TISPAITTLAK-NYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHG 243
           T +  +  LA+ + +   + +N+    ++HS ++      V+     R   + + L+ + 
Sbjct: 407 TQTTKVEDLARISLRPGPLYINV-DHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNL 465

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + +    I TDV
Sbjct: 466 RKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICTDV 525

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFRE 362
           AARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  + Q  +    +  +E
Sbjct: 526 AARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFL-QPSEVGFLKHLKE 584

Query: 363 ANVSVV 368
           A V VV
Sbjct: 585 ARVPVV 590


>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
          Length = 740

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 206/410 (50%), Gaps = 42/410 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V  T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 157 NLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAAYMLPILERLL-- 214

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P   P     L + PTREL VQV +  + L   T + + + +GG+ V  +   L+
Sbjct: 215 ---YRPLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIGLSVGGLDVKIQEGVLR 271

Query: 123 NGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+R     ++  ++ ++LDEAD MLD  F + +++I+    + R+
Sbjct: 272 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 331

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVAL 228
            ++FSAT++  +  LA       +++ + S               R+  + D  A+L AL
Sbjct: 332 TILFSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 391

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             R         +H   + +VF  T+    R   +L     +V  L G L+Q +R   L+
Sbjct: 392 VCR--------TFHD--HTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLR 441

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +D    + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV + 
Sbjct: 442 KFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLA 501

Query: 349 PQNMQRRAERLFREANVSV---------VWEPAPSVEAIRERDAQRILQD 389
            +  +   +++ ++A   V         + +    +E++ E D Q+ILQ+
Sbjct: 502 GEQERTLVKKIIKQAKNPVKNRIIAPDIIEKYNKKLESL-ESDVQKILQE 550


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 172/333 (51%), Gaps = 7/333 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T +Q   +   L+ +D+L  AQTGSGKT+AF + +  +LL     F       + 
Sbjct: 21  GFKYATKIQAKTIPYALKNRDILGYAQTGSGKTLAFVIPILQSLLKFQITFY------SF 74

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I P+RELA QV   +E +    G+ + +   G+    +   ++   H+++ TPGRL ++
Sbjct: 75  VIVPSRELAFQVASYIETIGYLFGIKIGLLTSGIEYATQISIIKRSPHMMICTPGRLIEY 134

Query: 139 I-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
             +   L + ++K +V DEAD +    F      ++++ PK ++  +FSAT++  I  L 
Sbjct: 135 TEKTDNLFLKNIKKIVFDEADRLFQNDFDKKFLSVVENLPKFKQSFLFSATMTINIEKLK 194

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K    + V++ I  + +  S +    + +    ++  +  I        AI+F  T+   
Sbjct: 195 KISMSNPVKIKINKKYKTVSTLVQNYIFMPFKSKNCYLSYICNEFSDCLAIIFVDTQICA 254

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
            +   +L    F+V    G+LSQ +R+  L   +  + ++ ++TD+A+RGID+PD+EL+I
Sbjct: 255 EKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVSTDLASRGIDIPDIELII 314

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + ++     + +HR GRT RAG+ G  + ++ Q
Sbjct: 315 NYDIPLYTRDYIHRIGRTARAGKTGRVINLVTQ 347


>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
 gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
          Length = 782

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|75832045|ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus]
 gi|122140442|sp|Q3T147|DX39B_BOVIN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|74353855|gb|AAI02132.1| HLA-B associated transcript 1 [Bos taurus]
 gi|296474278|gb|DAA16393.1| spliceosome RNA helicase BAT1 [Bos taurus]
          Length = 428

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|70945373|ref|XP_742513.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521539|emb|CAH76133.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 649

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 177/365 (48%), Gaps = 39/365 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------- 66
           Y   T +Q+  L+  + + D++  AQTGSGKT  + L + + +L  +             
Sbjct: 250 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEENNKN 309

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  G
Sbjct: 310 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 369

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
           A I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++          
Sbjct: 370 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 429

Query: 179 ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                             KR+ +MFSAT    I  LAK+Y  +   + +      +  I 
Sbjct: 430 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 489

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              V     ++ + ++ +L  +     I+F  T+       + L       V + G+ SQ
Sbjct: 490 QNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQ 549

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG 
Sbjct: 550 DERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGN 609

Query: 341 KGMSV 345
            G++ 
Sbjct: 610 IGIAT 614


>gi|242219333|ref|XP_002475447.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725348|gb|EED79339.1| predicted protein [Postia placenta Mad-698-R]
          Length = 806

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 205/408 (50%), Gaps = 29/408 (7%)

Query: 1   MKIFENIPQVIGEALSERG-----YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           +K F ++P V G  L++RG     +V++T +Q   L   L+ KDVL +A+TGSGKT+AF 
Sbjct: 53  LKSFADLP-VSG--LTKRGLKKAFFVDMTDIQAKSLPVSLKGKDVLGAARTGSGKTLAFL 109

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + +   L     ++ P     AL I+PTRELAVQ+   L  +         + IGG +V 
Sbjct: 110 VPVLEILYRR--KWGPQDGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNVK 167

Query: 116 RERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ER  L    +I+V TPGRL  H+ +  G    +L+ +VLDEAD +LD+GF+  +  +L 
Sbjct: 168 DERERLSR-MNILVATPGRLLQHMDQTIGFECDNLQMLVLDEADRILDMGFQRTLSALLS 226

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDR 231
             PK R+ L+FSAT + +++ LA+   KD V + +   +   +    ++   VL  L  +
Sbjct: 227 HLPKARQTLLFSATQTDSVSDLARLSLKDPVYIGVHDSDNASAMPKSLEQHYVLCTLDQK 286

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF---QVVALSGELSQQERSNALQ 288
            + + + L+ H     +VF S+   V RF       L     ++ L G+  Q  R    Q
Sbjct: 287 LDLLWSFLKSHLQSKVLVFLSSCKQV-RFVFETFRRLHPGVPLLHLHGKQKQMTRLATFQ 345

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVF 346
                +  V  ATD+AARG+D P +  V+  +   + E  +HR GRT R  +  KG+ +F
Sbjct: 346 RFTGMKHAVLFATDIAARGLDFPAVNWVLQVDAPEDAETYIHRVGRTARYESAGKGL-LF 404

Query: 347 VIPQNMQRRAERLFREANVSVVWEP----APSVEAIRERDAQRILQDP 390
           ++P   +   + L   A  S+  E     A   ++I  +      QDP
Sbjct: 405 LMPSEEEGMTQAL---AKKSITAEKIKIRASKTQSIENQLQNLAFQDP 449


>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
          Length = 641

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|71029630|ref|XP_764458.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68351412|gb|EAN32175.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 529

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 184/350 (52%), Gaps = 14/350 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L+E  +   T +Q   + P L+ KDVL  A+TGSGKT+AF + LA  L     +F 
Sbjct: 67  ILRSLTENNFTKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPLAEVLYQV--KFL 124

Query: 71  PASAPLALAIAPTRELAVQ---VGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           P +    L I+PTREL++Q   V RE+ ++L    G+V    +GG +  +E   L  G +
Sbjct: 125 PRNGTGGLIISPTRELSLQIFEVAREVCKYLPQTLGLV----MGGANRKQEEFKLCKGVN 180

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH++  KG    +L   V+DEAD +L +GF  ++  I+   PK R+  +F
Sbjct: 181 ILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPKNRQTSLF 240

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT +  +  LA+   K  V + + S E+   S ++   V+    +R   +   L+ +  
Sbjct: 241 SATHTSNVEDLARLSLKAPVFLEVMSNESATVSGLEQGYVVCEAENRFMLLYTFLKKNLD 300

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF S+  SV    ++L      V ++ G   Q  R             + + TDVA
Sbjct: 301 RKVMVFFSSCNSVKFHDELLNYVDIPVKSIHGRKKQTNRLTTYYTFCKSNKGILLCTDVA 360

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           ARG+D+P ++ ++  +   +P++ +HR GRT R   G+    +F++P+ +
Sbjct: 361 ARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEEL 410


>gi|321459437|gb|EFX70490.1| hypothetical protein DAPPUDRAFT_61214 [Daphnia pulex]
          Length = 509

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 184/369 (49%), Gaps = 7/369 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+++ EA+  + + + + +Q       L+  D++  AQTG+GKT+AF L     + 
Sbjct: 67  FAHYPELL-EAVQNQQFKDPSPIQSQAWPVLLKGHDLIGIAQTGTGKTLAFLLPAMIHIE 125

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +    +  S P  L +APTRELA Q+ RE+   +   G+      GG    ++   +  
Sbjct: 126 GQPISRAERSGPSVLIMAPTRELAQQIEREVA-KFPWKGIKCLCVYGGGDRRQQIGAVAK 184

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D ++   L  S +  VVLDEAD MLDLGF   I+ IL      R+++
Sbjct: 185 GVEIVVATPGRLYDLMQAGALKTSSVSYVVLDEADRMLDLGFEPQIKKILIDVRPDRQII 244

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRY 241
           M SAT    I  +A  Y  + ++V + + +    HS   +  +L     R   I  I   
Sbjct: 245 MTSATWPEGIRRIANEYMDNPLQVCVGTLDLAACHSVTQHVEILDEEEKRPRLIDFIRAL 304

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF   +    +    L+        + G+  Q +R  AL  +R G  ++ IAT
Sbjct: 305 DPNDKAIVFVGRKLVADQVASELSLIGISCQCIHGDREQIDREQALADLRSGDVKLLIAT 364

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RGID+ D+  +++ +   + E  +HR GRTGRAGR G+++  + +    +A  L  
Sbjct: 365 DVASRGIDIKDITHILNYDFPRHAEEYVHRIGRTGRAGRTGIAISFMTREDWSKASDLID 424

Query: 360 -FREANVSV 367
             +EAN  +
Sbjct: 425 ILKEANQEI 433


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 164/334 (49%), Gaps = 3/334 (0%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   P+ L 
Sbjct: 256 YSQPTPIQAQGIPVALSGRDIIGIAKTGSGKTAAFVWPMLVHIMDQKE-LEPGDGPIGLI 314

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
            APTREL+ Q+  E +      G+ V    GG S+  + + LQ GA IVV TPGRL D +
Sbjct: 315 CAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQTKALQLGAEIVVCTPGRLIDLV 374

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FSAT    I  L ++
Sbjct: 375 KKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANHVRPDRQTLLFSATFKKRIERLCRD 434

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNAIVFCSTRASV 257
              D ++V        + D+     +          +   ++ +    + ++F + +A+ 
Sbjct: 435 ILMDPIKVVQGDLGEANEDVQQIVEIFPAGPPKWQWLTRRLVEFTSVGSVLIFVTKKANS 494

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L    F+   L G++ Q ER+  +   +     V +ATDVAARG+D+P ++ V+
Sbjct: 495 EELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIPVMVATDVAARGLDIPSIKTVV 554

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +++ + +   HR GRTGRAG K   +  +  N
Sbjct: 555 NYDVARDIDTHTHRIGRTGRAGNKVTDISTLKAN 588


>gi|332833188|ref|XP_003312410.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 [Pan
           troglodytes]
          Length = 722

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 189/394 (47%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 110 PHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMES 169

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 170 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 229

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 230 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQN 289

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-----------------SDIDYRAVL 225
           ++ SAT++  +T LA     D V +++  ++                     ++D  A+ 
Sbjct: 290 VLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDELDSFAIP 349

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASV----SRFTKVL---- 264
            +L      + + LR             +   +  +VF S+   V    S F + L    
Sbjct: 350 ESLKQHVTVVPSKLRLVCLAAFILQKCKFEKDQKMVVFFSSCELVEFHYSLFLQTLLSSS 409

Query: 265 ----------AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                     A    + + L G + Q+ER+   Q     R  V + TDVAARG+DLP + 
Sbjct: 410 GAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVT 469

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     S+P   +HR GRT R G  G S+ ++
Sbjct: 470 WIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLIL 503


>gi|301118572|ref|XP_002907014.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108363|gb|EEY66415.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 2091

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 180/343 (52%), Gaps = 12/343 (3%)

Query: 15   LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
            + + GY    ++Q+  L   +  +DV+  A+TGSGKT+AF L +   +LA+         
Sbjct: 1505 IKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHVLAQPP-LQENEG 1563

Query: 75   PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            P+ + +AP RELA Q+  E        G+      GG SV  +  +L+ G+ IV+ TPGR
Sbjct: 1564 PIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQIANLKRGSDIVICTPGR 1623

Query: 135  LCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            + D +    GK +++  +  VVLDEAD M D+GF   I  I+ +    R+ L+FSAT   
Sbjct: 1624 MIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRPDRQTLLFSATFPR 1683

Query: 192  AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGAKNA 247
            ++ +LA+   K  V + + + +    DI      V + + D+  + +L+    ++   N 
Sbjct: 1684 SVESLARKVLKKPVEITVGTRSTASGDI---TQYVEVREEDDKFMRLLQLLGLWYEKGNI 1740

Query: 248  IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            +VF + + +  +  + L +  +  ++L G   Q +R   +   +     V +AT VA RG
Sbjct: 1741 LVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVRTVMVATSVAGRG 1800

Query: 308  IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
            +D+ DL LVI+    ++ E+ +HR GRTGRAGRKG +  F+ P
Sbjct: 1801 LDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISP 1843


>gi|56785884|gb|AAW29074.1| DEAD box helicase Vasa2 [Nematostella vectensis]
          Length = 281

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/279 (36%), Positives = 153/279 (54%), Gaps = 7/279 (2%)

Query: 53  AFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           AF L + ++++     +  FS    P A+ IAPTRELA Q+  E       T +   VC 
Sbjct: 1   AFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTMLRPVVCY 60

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGVSV  + R LQ+G +++VGTPGRL D I    +++  L+ ++LDEAD MLD+GF   I
Sbjct: 61  GGVSVSHQLRQLQSGCNLLVGTPGRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAI 120

Query: 170 EFILDS--SPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++S   P K  R+ LMFSAT    I  LA ++  D + + +       SDI+   + 
Sbjct: 121 RRIVESMGMPDKSERQTLMFSATFPEEIQRLAGDFLNDYLFLTVGRVGGTTSDIEQTVIE 180

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  +++ + +  IL   G    +VF  ++ S       L+   F   ++ G+  QQER  
Sbjct: 181 VTDNEKRDRLTQILGDAGTDRTLVFVESKRSADFLAIFLSGEGFPTTSIHGDRLQQEREE 240

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
           AL   R GR  V IAT+VAARG+D+ D++ VI+ +L S+
Sbjct: 241 ALDDFRKGRCPVLIATNVAARGLDIDDVKHVINFDLPSD 279


>gi|195502468|ref|XP_002098237.1| GE10265 [Drosophila yakuba]
 gi|194184338|gb|EDW97949.1| GE10265 [Drosophila yakuba]
          Length = 681

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 202 AVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 259

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 260 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 319

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 320 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 379

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 380 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 438

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 439 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 498

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 499 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 539


>gi|17509811|ref|NP_490989.1| hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
 gi|7331768|gb|AAF60456.1| Hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
          Length = 732

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 182/353 (51%), Gaps = 12/353 (3%)

Query: 4   FENIPQV--IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+ P      E L +  Y   T +Q   +   L   DV+ +A+TGSGKT+A  + +   
Sbjct: 78  FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++SP     AL I+PTRELA+Q    +  + A  G    + IGG  V  ER  +
Sbjct: 138 LW--RAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI 195

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I+V TPGRL  H+     ++   L+ +VLDEAD MLD+GF   +  I+++ P +R
Sbjct: 196 -SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAER 254

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVN 237
           + L+FSAT +  +  L +    D V V++  EN   +  D      V+V    + NA+ +
Sbjct: 255 QTLLFSATQTRNVKDLCRVCTNDPVFVSV-HENASAATPDNLKQSYVIVEEEHKINALWS 313

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRA 295
            +  H  K ++VF S+       T+  ++      V+ L G ++Q++R        + +A
Sbjct: 314 FIEAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKA 373

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V IATDVA+RG+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++
Sbjct: 374 AVLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMV 426


>gi|332637236|ref|ZP_08416099.1| ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 452

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 184/369 (49%), Gaps = 20/369 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL E  +   T VQE ++   ++ + V+  +QTGSGKT  F       L+    +F 
Sbjct: 13  IYTALDEIRFTTPTKVQERLIPVVMQGRSVVGQSQTGSGKTHTF-------LIPIFQKFD 65

Query: 71  PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVV------VAVCIGGVSVHRERRDLQN 123
           P +  + A+   P+RELA Q+    + L   TG        + + +GG    R+   L++
Sbjct: 66  PTAQKVQAVITTPSRELAQQIYAAAKQL--GTGFPADQQPRIGLYVGGTDKVRQMHQLES 123

Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D     GL+I    A+V+DEAD  +DLGF  +++ I  + P+  +M
Sbjct: 124 TQPQIVIGTPGRIKDLYTAGGLDIHTASALVVDEADMTMDLGFLPEVDAIAGAMPEDLQM 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +E      I    V      +D+ +  +L   
Sbjct: 184 LVFSATIPQKLQPFLKKYLTNPVVEEIPTETVIAPTITNLLVGTKGMKKDDLVYELLTMG 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      TK L     +V  + G +  +ER   +Q ++    +  +ATD
Sbjct: 244 NPYMALVFTNTKERARELTKALRNRGLKVAEIHGGIQPRERKRTMQQIQHLDYQYVVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+P + L+I+  + +  E  +HR GRTGR G +G ++ +   + + R + +   
Sbjct: 304 LAARGIDIPGVSLIINDGIPTELEFFVHRVGRTGRNGMEGTAITIYNPDEEERVQAV--- 360

Query: 363 ANVSVVWEP 371
            N+ V +EP
Sbjct: 361 ENMGVTFEP 369


>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1198

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 175/341 (51%), Gaps = 7/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  A+ ++GY   T +Q   +   L  KDV+  A+TGSGKT AF + L   L +      
Sbjct: 268 IFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEKLQSH----V 323

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +   AL ++PTRELA+Q  +    L + T +   + +GG S+ ++   +     IV+ 
Sbjct: 324 PGTGCRALILSPTRELAMQTHKFCNDLSSFTNLRTRLIVGGESLEQQFAAMHENPDIVIA 383

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR    +    L +  ++ VV DEAD + ++GF + +  +L   P+ R+  +FSAT+ 
Sbjct: 384 TPGRFLHVVMEMNLRLQAVQYVVFDEADRLFEMGFAEQLSELLARLPEGRQTCLFSATLP 443

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNA 247
             +   A+   +D V V +  + +   ++     +V   ++  A++++L        + +
Sbjct: 444 RMLVDFARAGLQDPVLVRLDVDTKISENLSLAHFIVRKDEKIGALIHVLTNLINTTTEQS 503

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF +TR  V   + +L      V ++ G + Q  R   L   R  +A V + TDVAARG
Sbjct: 504 IVFVATRHHVEFISLILTSFGLSVASIYGSMDQAARKINLAKFRLNKASVMVVTDVAARG 563

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+P L  VI+ +  + P+  +HR GR  RAGR G++  ++
Sbjct: 564 IDIPLLNNVINYDFPAKPKLFIHRVGRAARAGRTGVAYSLV 604


>gi|189502902|gb|ACE06832.1| unknown [Schistosoma japonicum]
 gi|226469666|emb|CAX76663.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469670|emb|CAX76665.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469672|emb|CAX76666.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469674|emb|CAX76667.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469676|emb|CAX76668.1| Helicase at 25E [Schistosoma japonicum]
 gi|226469678|emb|CAX76669.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473012|emb|CAX71192.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473014|emb|CAX71193.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473016|emb|CAX71194.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473018|emb|CAX71195.1| Helicase at 25E [Schistosoma japonicum]
 gi|226473020|emb|CAX71196.1| Helicase at 25E [Schistosoma japonicum]
          Length = 426

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 181/345 (52%), Gaps = 21/345 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F +A    L  E +     +
Sbjct: 57  AIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEGE-----A 111

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGT 131
               L +  TRELA Q+ +E E +      + V V  GG+ + ++   L ++  HIVVGT
Sbjct: 112 NTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVFFGGMPIRKDIETLTKSPVHIVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+ D +R K L + H+K  ++DE D+MLD L  R D++ I   +P +++++MFSAT+S
Sbjct: 172 PGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMRRDVQEIFRMTPHQKQVMMFSATMS 231

Query: 191 PAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             I  + +N+ +D + + I +++       RQH       V V  ++++  +  +L    
Sbjct: 232 KEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHY------VKVKENEKNRKLFELLDELQ 285

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  +        ++L +  F  +A+   ++Q+ER    Q  ++ + R+ +AT++
Sbjct: 286 FNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLERYQAFKNFQKRLLVATNL 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RG+D+  + +V + ++  + +  LHR  R GR G KG+++  I
Sbjct: 346 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFI 390


>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
 gi|118595361|sp|Q0V1Z7|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
          Length = 808

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 190/390 (48%), Gaps = 14/390 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL     + 
Sbjct: 296 IQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLL-----YR 350

Query: 71  PASAPLA-LAI-APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           P   P   +AI  PTRELAVQ       L + T +  A+  GG S   +   L+    +V
Sbjct: 351 PKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDVV 410

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++FSA
Sbjct: 411 IATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTMLFSA 470

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGA 244
           T++  +  L +      VR+ + ++      +    + +     D     ++ I      
Sbjct: 471 TMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYT 530

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F   +    R   V A    +   L G +SQ++R  A++  R G++   +ATDVA
Sbjct: 531 ERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLATDVA 590

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFR 361
           +RG+D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +    + ++A +  R
Sbjct: 591 SRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSR 650

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +    VV    P  E  R  +  R L+D +
Sbjct: 651 DQGSKVVSRQVPVEETDRWMEKLRGLEDEI 680


>gi|310791524|gb|EFQ27051.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 550

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 179/344 (52%), Gaps = 23/344 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ +D +  ++TGSGKTVAF + +     AE+      +A  AL + PT
Sbjct: 144 TGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKW-AED-----PTAIFALVLTPT 197

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  + + + +   +   +  GG  +  +   L    H+V+ TPGRL DHIR  G
Sbjct: 198 RELALQIFEQFKAISSPQSLKAILVTGGSDMRPQAIALAQRPHVVIATPGRLADHIRTSG 257

Query: 144 ----LNISHLKAVVLDEADEMLDL----GFRDDIEFILDSSPK--KRRMLMFSATISPAI 193
                 +  +K VVLDEAD +LD         D+E  L   P   +R+ L+F+ATI+P +
Sbjct: 258 EDTICGLRRVKYVVLDEADRLLDATGPGSMIPDVEECLSVLPPSSQRQTLLFTATITPEV 317

Query: 194 TTLAKNYQKDAVRVNIASENRQHS-----DIDYRAVLVALSDRDNAIVNILRYHG--AKN 246
             L     K   +     E    S      +    + V ++ R++ +   L   G   K+
Sbjct: 318 RALKDMPLKPGKQPVFVCEVDTQSLAIPATLSQMHLQVPVTHREHYLHTFLLTDGNVEKS 377

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+  ++      +L     +V +L   L Q++R + L   R   AR+ +ATDVA+R
Sbjct: 378 VIIFCNRTSTADYLHHLLRLLDHRVTSLHSGLPQRQRVDNLGRFRAAAARILVATDVASR 437

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+D+P++ LVI+ ++  NP++ +HR GRT RAGRKG +V  + Q
Sbjct: 438 GLDIPEVALVINYDIPRNPDDYIHRVGRTARAGRKGEAVTFVGQ 481


>gi|317495429|ref|ZP_07953798.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914488|gb|EFV35965.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 443

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 179/336 (53%), Gaps = 10/336 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A+ +  + N T +QE + +P L+ K+++  +QTGSGK+ +F L + S L  E  +
Sbjct: 13  EFVNKAIVDLKFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIFSKLNVEKKK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   ++ +APTREL+ Q+      +  +++  + + +CIGG  ++R+   + N  H
Sbjct: 73  TQ------SIILAPTRELSRQLYDMAVHIAEFSEDDIKITLCIGGQDLNRDIERVSNAPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTP R+ +  R   L I  ++ +V+DE D M+DLGF +DI+ I   + +  + L+FS
Sbjct: 127 IIIGTPTRVLELDRASALAIKEVETLVIDECDMMIDLGFMEDIDKISKRTAENCQFLVFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y K+A  + +  +N +   I+Y  +    S R   +  I        
Sbjct: 187 ATIPTQMNHFLKKYLKNAQYIEV--DNAKFGKIEYILIPEKSSTRLEKLYEITTVINPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F + +  V   +  L      V  L G+L+ +ER    + + +      +A+D+ +R
Sbjct: 245 ALIFANKKTEVEEVSNYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTYVVASDLMSR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GID+  +  VI+  + ++ +  +HR+GRTGRAG  G
Sbjct: 305 GIDIEGVSHVINYNIPNDLDFFIHRAGRTGRAGLNG 340


>gi|219120805|ref|XP_002185634.1| fructose-bisphosphate aldolase [Phaeodactylum tricornutum CCAP
           1055/1]
 gi|209582483|gb|ACI65104.1| fructose-bisphosphate aldolase [Phaeodactylum tricornutum CCAP
           1055/1]
          Length = 627

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 185/340 (54%), Gaps = 12/340 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +  +T +Q A +   L  +D+L +A+TGSGKT+AF + +   L    +RFSP   P A+ 
Sbjct: 21  FTTMTDIQNACIPHALAGRDILGAARTGSGKTLAFLIPVLECLY--RNRFSPVDGPGAVV 78

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELAVQ+ + L          V + IGG     E ++     +I++ TPGRL  H+
Sbjct: 79  LSPTRELAVQIFQVLRMAGKYHAFSVGLLIGGKRDFFEEQNQVGSTNIIIATPGRLLQHL 138

Query: 140 -RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197
            +    + S L+ +VLDEAD +LD+GFRD +  IL+  P ++R+ L+FSAT +  ++ LA
Sbjct: 139 EQTPNFDTSDLRMLVLDEADRVLDMGFRDQLVRILEYLPTEQRQTLLFSATQTNDVSHLA 198

Query: 198 K-NYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             + QK + + V+   +      +    V+V L  + +A+ + ++ H    +I+F +T +
Sbjct: 199 TMSLQKPEYLGVHDKEKTSTPDALQQSYVVVPLEHKLDAVYSFVKSHLKNKSIIFFATCS 258

Query: 256 SVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            V R+   L   L     V+AL G+L Q +R+            V  ATD+AARG+D  D
Sbjct: 259 QV-RYAWELFCSLRPGIPVMALHGKLVQTKRTEIYFDYLQRPHAVLFATDIAARGLDFKD 317

Query: 313 LELVIHAELSSNPENLLHRSGRTG--RAGRKGMSVFVIPQ 350
           ++ V+ A+   +    +HR+GRT   RAG K + +   P+
Sbjct: 318 VDWVVQADAPEDKAMYIHRAGRTARYRAGGKSLLMLTPPE 357


>gi|167387857|ref|XP_001738337.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
 gi|167394345|ref|XP_001740939.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
 gi|165894738|gb|EDR22621.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
 gi|165898511|gb|EDR25351.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
          Length = 419

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+++ G+ + + VQ  ++   L ++D+L  A++G GKT  F +++ +  L  
Sbjct: 39  NLKKEILMAITDCGFEHPSEVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCL 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK----TG--VVVAVCIGGVSVHRERR 119
            D  S      AL I  TRELA+Q  +E + +  +    TG  +     +GGV    E++
Sbjct: 99  GDYVS------ALVICHTRELALQAQKEFDRMKKRLCEATGKEIPTGTFVGGV---EEKK 149

Query: 120 DLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           D++    +   IV+GTPGR+   +R K L++S L   V+DE D++L      +I  I  S
Sbjct: 150 DIEFIKTHKPTIVIGTPGRIASLVRQKALDLSKLDTFVIDECDKVLGSTSEIEIGEIFIS 209

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDN 233
           SPK+++++MFSATIS     + + Y K+ + V I    +   H    Y   L   +D+  
Sbjct: 210 SPKEKQVMMFSATISETNKGICRKYLKNQLEVFIDDGEKLFLHGLHLYFKKL-GDNDKKK 268

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             ++I+ Y     AIVF           K L +  +    L G + Q+ R    Q  RDG
Sbjct: 269 TFMDIIDYIDFNQAIVFAENSERCRVLVKKLKQIGYPCGILYGRMDQEIREKEYQRFRDG 328

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +RV ++TD+  RGID+  + LV++ ++ ++ +  LHR GR GR G KG+++  I
Sbjct: 329 ESRVLVSTDLCGRGIDVAKVNLVVNFDMPNDSDQFLHRVGRAGRFGTKGVAISFI 383


>gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus anatinus]
          Length = 451

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|74192407|dbj|BAE43010.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATMQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|308160174|gb|EFO62674.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia P15]
          Length = 547

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 192/378 (50%), Gaps = 17/378 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+   G+ N+T +QEA +   L  +++   A TGSGK++AF L     +   N +    
Sbjct: 42  EAVDAMGHKNMTRIQEASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDLIHKANMKLHHG 101

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + + PTRELA+Q+      L + T + V + IGG S  +E   L  GA +V+ TP
Sbjct: 102 TG--VIVLTPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCKGASVVIATP 159

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATI 189
           GRLCDH+    G     L  ++LDEAD +L+ GF+ ++E IL     PK R++  FSAT+
Sbjct: 160 GRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLRQVCFFSATM 219

Query: 190 SPAITTLAKNY--QKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           S     +      ++  VR+N     ++  R H +  Y  ++     R   +   ++   
Sbjct: 220 SDKCLEVPHMEVDKETLVRINTDVKSSAATRAHFEQGY--IICPPEQRFLLLYTFMKRRS 277

Query: 244 AKNAIVFCSTRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K  IVF S+R SV  + + L    +  ++ L G + Q++R        + ++ V +AT+
Sbjct: 278 DKKIIVFLSSRDSVEFYYEFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQSGVLLATN 337

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRRAERLF 360
           VAARG+DLP ++ VI  +   + E+ +HR+GR   G   +KG+ +  +  + + +     
Sbjct: 338 VAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTNKKGVGLLFL-MSHETKFISFL 396

Query: 361 REANVSVVWEPAPSVEAI 378
           +  NVS+     P+ + I
Sbjct: 397 KAHNVSLFEFEFPADKII 414


>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013518|sp|A5DY34|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 686

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 194/354 (54%), Gaps = 19/354 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I ++L + G+   T VQ + +   L  KD++ SAQTGSGKT A+ + +   LL   +   
Sbjct: 207 ILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKN--- 263

Query: 71  PASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            +++  A+ + PTRELA+QV   GR+L    +     +AV  GG+S+ ++ + L+    I
Sbjct: 264 -STSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAV--GGLSLKQQEQQLKTRPDI 320

Query: 128 VVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-KRRMLMF 185
           V+ TPGRL DHIR     ++  ++ +++DEAD ML+ GF++++  IL   PK KR+ L+F
Sbjct: 321 VIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPKQKRQTLLF 380

Query: 186 SATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRY 241
           SAT++   I  L +      ++V+I       S ++ +   V +  R+    A++ +L  
Sbjct: 381 SATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQ--FVRIRKREELKPAVLYLLLK 438

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+    +   +L      V  L G L+Q++R   ++  ++    V I T
Sbjct: 439 KLEGRTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQEQRLANVKAFKNN-VNVLICT 497

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           D+AARG+D+  +E VI+ ++    E   HR GRT RAGRKG S+  + ++MQ R
Sbjct: 498 DLAARGLDI-RIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQDR 550


>gi|300123001|emb|CBK24008.2| unnamed protein product [Blastocystis hominis]
          Length = 457

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 180/335 (53%), Gaps = 11/335 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T++Q   +   L  KDVL +A+TGSGKT+AF + +   L     ++       A+ I P
Sbjct: 1   MTTIQSKAIPVLLAGKDVLGAAKTGSGKTLAFVIPVIELL--SRLKWKQRQGTGAIIITP 58

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG- 141
           TRELA+Q+   +  L +  G+   + +GG +   E   L  G  I++ TPGRL DH++  
Sbjct: 59  TRELAMQIFGVVTDLASAHGLTHGIVMGGANRKSEASKLVKGISILIATPGRLLDHLQNT 118

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           KG N  +L+ +V+DEAD +L +GF +D++ I+   PKKR+ ++FSAT    +  LAK   
Sbjct: 119 KGFNFENLQCLVIDEADRILQIGFEEDMKAIMRLLPKKRQTMLFSATQDKNVQGLAKLSL 178

Query: 202 KD---AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI-VFCSTRASV 257
            D    + V+ A E    S ++   V+     R   +   L+ +  K  I VF S+  SV
Sbjct: 179 SDNPVYIGVHDACEEATVSRLEQGYVVCGSDQRFLLLYTFLKKNIQKKKIMVFFSSCNSV 238

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               ++L      V+ + G+  QQ RS       + +  V + TDVAARG+D+P ++ +I
Sbjct: 239 QFHAELLNYIDIPVMCIHGKQKQQRRSAVFFEFVNAKTGVLLCTDVAARGLDIPAVDWII 298

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMS---VFVIP 349
             +   +P+  +HR GRT R G++G+    +F++P
Sbjct: 299 QYDPPDDPKEYIHRVGRTAR-GKEGVGRALLFLLP 332


>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 660

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 176/360 (48%), Gaps = 10/360 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL  +G    T +Q   +   L  +D++  A TGSGKTV F + L    L E
Sbjct: 223 KLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPLIMLALEE 282

Query: 66  NDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRE 117
             +        P  + + P+RELA Q    +++            +   +CIGG     +
Sbjct: 283 EMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIGGEDKRSQ 342

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              +Q  G H +V TPGR+ D +    ++    K + LDE D MLD+GF ++++ I++  
Sbjct: 343 IDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEVQKIMNHF 402

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++R+ L+FSAT+       AK+     V VN+      + D+      V    +   ++
Sbjct: 403 KQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQEAKIVYLL 462

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+   A    +FC  +  V    + L       V++ G   Q+ER+ A+++ ++G   
Sbjct: 463 ECLQ-KTAPPVCIFCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKLFKEGVKD 521

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AA+G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I + ++  A
Sbjct: 522 VLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFINKMVEESA 581


>gi|219120803|ref|XP_002185633.1| glycine decarboxylase T-protein, aminomethyl transferase, GDCT,
           GCST, GCVT [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582482|gb|ACI65103.1| glycine decarboxylase T-protein, aminomethyl transferase, GDCT,
           GCST, GCVT [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 476

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 185/340 (54%), Gaps = 12/340 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +  +T +Q A +   L  +D+L +A+TGSGKT+AF + +   L    +RFSP   P A+ 
Sbjct: 21  FTTMTDIQNACIPHALAGRDILGAARTGSGKTLAFLIPVLECLY--RNRFSPVDGPGAVV 78

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELAVQ+ + L          V + IGG     E ++     +I++ TPGRL  H+
Sbjct: 79  LSPTRELAVQIFQVLRMAGKYHAFSVGLLIGGKRDFFEEQNQVGSTNIIIATPGRLLQHL 138

Query: 140 -RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-KKRRMLMFSATISPAITTLA 197
            +    + S L+ +VLDEAD +LD+GFRD +  IL+  P ++R+ L+FSAT +  ++ LA
Sbjct: 139 EQTPNFDTSDLRMLVLDEADRVLDMGFRDQLVRILEYLPTEQRQTLLFSATQTNDVSHLA 198

Query: 198 K-NYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             + QK + + V+   +      +    V+V L  + +A+ + ++ H    +I+F +T +
Sbjct: 199 TMSLQKPEYLGVHDKEKTSTPDALQQSYVVVPLEHKLDAVYSFVKSHLKNKSIIFFATCS 258

Query: 256 SVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            V R+   L   L     V+AL G+L Q +R+            V  ATD+AARG+D  D
Sbjct: 259 QV-RYAWELFCSLRPGIPVMALHGKLVQTKRTEIYFDYLQRPHAVLFATDIAARGLDFKD 317

Query: 313 LELVIHAELSSNPENLLHRSGRTG--RAGRKGMSVFVIPQ 350
           ++ V+ A+   +    +HR+GRT   RAG K + +   P+
Sbjct: 318 VDWVVQADAPEDKAMYIHRAGRTARYRAGGKSLLMLTPPE 357


>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
 gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
 gi|91206589|sp|Q2UQI6|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
 gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
          Length = 820

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 173/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 308 NLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 365

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 366 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 422

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 423 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 482

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++ ++  L +      VR+ + S+     ++    V +     D  +  +L   
Sbjct: 483 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLLHLC 542

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R          +   L G +SQ++R  +++  R+G+   
Sbjct: 543 KEVYTG--RVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKVSF 600

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+AARG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 601 LLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 650


>gi|281342596|gb|EFB18180.1| hypothetical protein PANDA_020423 [Ailuropoda melanoleuca]
          Length = 425

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|159467789|ref|XP_001692074.1| hypothetical protein CHLREDRAFT_128577 [Chlamydomonas reinhardtii]
 gi|158278801|gb|EDP04564.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 488

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 174/338 (51%), Gaps = 13/338 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G    T VQ   +   L+ +DV+  AQTGSGKT AF L +   L    D +       AL
Sbjct: 124 GMSQPTDVQRGCIPAILKGRDVIGLAQTGSGKTAAFALPILQAL--AKDPY----GVFAL 177

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+  +   L A   +   V IGGV + ++ R+L    H+VV TPGRL D 
Sbjct: 178 VLTPTRELAVQISEQFRALGAGMRLKELVVIGGVDMQQQARELAKRPHVVVATPGRLADW 237

Query: 139 I-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           +  G    ++  + +VLDEAD +LD  F DD+  IL + P  R+ L+FSAT++ ++  L 
Sbjct: 238 VMSGLAAGMARCRFLVLDEADRVLDSTFEDDLRRILKALPAARQTLLFSATMTKSLIALQ 297

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-----ILRYHGAKNAIVFCS 252
           +    DA  V  A E  + +D      L   +      ++     +L     ++AI+F  
Sbjct: 298 RQSLADA-HVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLLTVVLPARKVRSAIIFAG 356

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T       + +L E     VAL    SQ+ R  AL   +  +  + +ATDVA+RG+D+P 
Sbjct: 357 TCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQVPLLLATDVASRGLDIPS 416

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++ VI+ +L     + +HR GRT RAGR G SV ++ Q
Sbjct: 417 VDAVINFDLPMLARDYVHRVGRTARAGRSGWSVSLVTQ 454


>gi|154331389|ref|XP_001561513.1| eukaryotic initiation factor 4a [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|150421577|sp|Q25225|IF4A_LEIBR RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|134058830|emb|CAM36502.1| putative eukaryotic initiation factor 4a [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 403

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L + +       +GG  V  +
Sbjct: 88  LDFRHNLIQ------GLVLSPTRELALQTAEVISRIGEFL-SNSAKFCETFVGGTRVQDD 140

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G  + VGTPGR+ D I+   L    L+ +VLDEADEML  GF D I  I    P
Sbjct: 141 LRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP 200

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++ +FSAT+   +  L K + +D VR+ +  E+     I    + V    + + +++
Sbjct: 201 KDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V ++  E+ + +R   +   R G +RV
Sbjct: 261 LYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N EN LH
Sbjct: 321 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353


>gi|325685734|gb|EGD27812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 453

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/341 (32%), Positives = 174/341 (51%), Gaps = 9/341 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  +     
Sbjct: 14  IRQGLAKIGFAKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAIDED----- 68

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER---RDLQNGAHI 127
            A    A+  AP+RELA Q+ R    L   +G+ +A+        R+R   R  QN   +
Sbjct: 69  -ALYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQNKPQL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M  FSA
Sbjct: 128 VIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMSAFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +T   + Y      + I +       I    + +   DR   +  +L       A
Sbjct: 188 TIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQPYLA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+AARG
Sbjct: 248 LVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDLAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           IDLP + LVI+ E+    E ++HR GRTGR G  G +V ++
Sbjct: 308 IDLPGVSLVINYEIPKELEFIIHRIGRTGRNGLPGHAVTLV 348


>gi|224587698|gb|ACN58701.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 422

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   + + S   
Sbjct: 53  AIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVS--- 109

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
               L +  TRELA Q+ +E E    Y  T V  AV  GG+S+ ++   L+ N  HIVVG
Sbjct: 110 ---VLVMCHTRELAFQISKEYERFSKYMPT-VKAAVFFGGLSIKKDEDVLKKNCPHIVVG 165

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+   IR K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+
Sbjct: 166 TPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATL 225

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + V +  E +   H    Y   L   S+++  + ++L        
Sbjct: 226 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKD-SEKNRKLFDLLDVLEFNQV 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +       +++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 285 VIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  + +V + ++  + +  LHR  R GR G KG++V
Sbjct: 345 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 382


>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 457

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 9/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + S +  E+       
Sbjct: 18  AIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKINPEDQTVQ--- 74

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
              A+   P+RELA Q+    + L  YA   + +   +GG     +   L +    +V+G
Sbjct: 75  ---AVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIG 131

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    P   +M++FSATI 
Sbjct: 132 TPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDLQMMVFSATIP 191

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y ++ V   I +E   + D+D   +     DR+  I  +L       A+VF
Sbjct: 192 QKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLLTLGEPYLALVF 251

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+      T+ L     +V  + G L  + R   ++ +RD   +  +ATD+AARGID+
Sbjct: 252 ANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDI 311

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L ++ E  +HR GRTGR G KG ++
Sbjct: 312 DGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAI 346


>gi|256076508|ref|XP_002574553.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238659762|emb|CAZ30786.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 463

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 19/368 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   + +Q+  +   +  +D++  AQ+G+GKT  F +     +L E  +         L
Sbjct: 44  GFEKPSLIQQKTIKQIILGRDLIAQAQSGTGKTATFSIGTLQNILPEICQIQ------VL 97

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELAVQ+   +  L     +    C GG  +  +  R+L  G H+VVGTPGR+ +
Sbjct: 98  VLAPTRELAVQIHHVMSSLSDYLSIRCVACCGGRNNTMQMARELDKGVHVVVGTPGRVLE 157

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR----------RMLMFSA 187
            +R   + ++ L+++VLDEADEML+ G  D +E I    P             ++++ SA
Sbjct: 158 LLRQGNIRLNKLRSLVLDEADEMLNRGLHDQLEEIYRRLPSHTNLNNKKSVNCQIVIISA 217

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKN 246
           T+      L +N   + V V +  +    SD+    + V   + +  A+ ++        
Sbjct: 218 TMLKEHLELFQNLTSNPVCVLVPRDELSLSDLQQFYIDVGSEEWKFEALNDLFSSVCVSQ 277

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF +TR  V      L    F V A  G+L Q +R + ++  R G  R+ I++D+ AR
Sbjct: 278 TVVFVNTRRKVEWLASQLKREGFTVAAAHGDLDQSQRESVMKQFRSGECRILISSDMWAR 337

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LV++ +L  N    LHR GR+GR GR G++V  I  N + R + L       
Sbjct: 338 GIDVQTVGLVVNFDLPMNTSEYLHRIGRSGRFGRTGLAVSFIA-NAEERKQLLEICNYYQ 396

Query: 367 VVWEPAPS 374
           +   PAP+
Sbjct: 397 IAIPPAPA 404


>gi|213511506|ref|NP_001134851.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|209736554|gb|ACI69146.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   + + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
               L +  TRELA Q+ +E E    Y  T V  AV  GG+S+ ++   L+ N  HIVVG
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPT-VKAAVFFGGLSIKKDEDVLKKNCPHIVVG 170

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+   IR K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+
Sbjct: 171 TPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATL 230

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + V +  E +   H    Y   L   S+++  + ++L        
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKD-SEKNRKLFDLLDVLEFNQV 289

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +       +++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 290 VIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG 349

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  + +V + ++  + +  LHR  R GR G KG++V
Sbjct: 350 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 387


>gi|307174080|gb|EFN64767.1| ATP-dependent RNA helicase abstrakt [Camponotus floridanus]
          Length = 620

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 173/344 (50%), Gaps = 11/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71
            L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +    L +  +  F  
Sbjct: 193 GLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEFCLEQEIDMPFIK 252

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDLQNG 124
              P  L I P+RELA Q   ++   Y  +        +   + IGGV V      +  G
Sbjct: 253 KEGPYGLIICPSRELAKQT-YDIIRHYTNSLRQVDCPEIRCCLAIGGVPVSESLAIINKG 311

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+  I      +R+ L+
Sbjct: 312 VHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIFSFFRGQRQTLL 371

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I   A++     V +N+        ++      V    +   ++  L+   A
Sbjct: 372 FSATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEAKIVYLLECLQ-KTA 430

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +  V    + L     + VA+ G + Q+ERS +++  R GR  V +ATDVA
Sbjct: 431 PPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRGGRKDVLVATDVA 490

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I
Sbjct: 491 SKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFI 534


>gi|73986746|ref|XP_533895.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
           isoform 1 [Canis familiaris]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + +   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 394


>gi|253743154|gb|EES99653.1| ATP-dependent RNA helicase-like protein [Giardia intestinalis ATCC
           50581]
          Length = 657

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 123/444 (27%), Positives = 193/444 (43%), Gaps = 99/444 (22%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V    +  + Y   T +Q+  L   +   D+L  +QTGSGKT AF + +   + 
Sbjct: 133 FDLDPEVYQNTVRAK-YFQPTPIQKHALPTGMVGYDLLACSQTGSGKTCAFIIPILHRIA 191

Query: 64  AE---------------NDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            E                 RF+P    + P  + ++PTREL  Q  +    L   T ++ 
Sbjct: 192 TEKLKLYTMSPGHHEDREFRFNPKGGRAYPFCIIMSPTRELVQQTAKASWMLSYGTSILT 251

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG     +R  LQ G  I+V TPGRL D I+   +  ++++ VV DE D MLD+GF
Sbjct: 252 RVAYGGDPSGPQRDALQMGCDILVATPGRLLDFIKQGVVETTYVRFVVFDECDRMLDMGF 311

Query: 166 RDDIEFILDSSPK-----------------KRRMLMFSATISPAITTLAKNY--QKDAVR 206
              I  IL   P                  +R+ L+FSAT    I  LA  +  Q   V 
Sbjct: 312 EPQIRDILHELPPIHHSIQDPSNPDITHQIERQTLLFSATFPKEIKNLAMEFLRQDRLVS 371

Query: 207 VNIASENRQHSDIDYRAVLVALS----------------DRDNAIVNIL----------- 239
           + +      + ++  R VLV  S                D +N + ++            
Sbjct: 372 ITVGQIGSSNPNLAQRVVLVERSNDKLRLLTEYITGQNADLNNMLTDVYGADKEQDPSLS 431

Query: 240 ----------RYHGAKNA-----------------------IVFCSTRASVSRFTKVLAE 266
                      ++ A NA                       IVF + ++   R  +   +
Sbjct: 432 TVSSVAGISEEFNEAMNATYPDSHAARHETLNKDGIIQYQTIVFTNFKSEADRIFRYFDD 491

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             ++V  + G+++Q+ER N L+  + GR  + I TDVA RG+D+P++ LV++ +L  N +
Sbjct: 492 MRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNVRLVLNYDLPGNVD 551

Query: 327 NLLHRSGRTGRAGRKGMSV-FVIP 349
           +  HR GRTGRAGR G++V FV P
Sbjct: 552 DYTHRIGRTGRAGRPGLAVTFVCP 575


>gi|213402237|ref|XP_002171891.1| ATP-dependent rRNA helicase spb4 [Schizosaccharomyces japonicus
           yFS275]
 gi|211999938|gb|EEB05598.1| ATP-dependent rRNA helicase spb4 [Schizosaccharomyces japonicus
           yFS275]
          Length = 621

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 202/385 (52%), Gaps = 45/385 (11%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLA 77
           G+ N+T VQE  +   L+ KD++V A TGSGKT+A+ L A+   L  + D         A
Sbjct: 2   GFTNMTPVQENSIPLFLKNKDLVVEAVTGSGKTLAYLLPAIQKVLRRDADEIGIG----A 57

Query: 78  LAIAPTRELAVQVGRELEWLYA---------------------KTGVVVAVCIGGV-SVH 115
           L IAPTRELA Q+    + L                       K  +     IGG  SV 
Sbjct: 58  LVIAPTRELATQIFNVTQELLVYQDEDEDKDGDSNSQKTKTTQKRKLTAVNYIGGKDSVA 117

Query: 116 RERRDLQNG-AHIVVGTPGR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           ++ R  +     IV+GTPGR   L D+I  KGL I     ++LDEAD ++D+GF+  ++ 
Sbjct: 118 QDIRLYKKTLPEIVIGTPGRINELLDNISTKGLEI-----LILDEADTLIDMGFQKTLQS 172

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHS-----DIDYRAVL 225
           I+   PK+RR  +FSAT++  I++  +    +++VR+ +    +Q        +  ++++
Sbjct: 173 IISRLPKQRRTGLFSATMNDTISSFLRVAGLRNSVRITVNVAMKQQDARTPLSLSIQSMV 232

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA--EHLFQVVALSGELSQQER 283
           V +  +   ++ +L     + AIVF  + A+V  FT +LA  +  + +V L G+ +   R
Sbjct: 233 VPVKFKLQCLLKLLSTTSFEKAIVFFLSCATVDYFTTLLAGMKLPYDIVPLHGKQAPSNR 292

Query: 284 SNAL-QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           +    Q +   +  V   TDVAARG+D+P++++V+  +   +P++  HR+GR GRAG++G
Sbjct: 293 TRHFEQFVSASKKTVLFTTDVAARGLDIPNVDIVLQMDPPLDPKSFSHRAGRAGRAGKRG 352

Query: 343 MSVFVIPQNMQRRAERLFREANVSV 367
           +S+ ++ +  +   E L R   V +
Sbjct: 353 LSIVMLHEGREEEYEDLLRVRKVPI 377


>gi|213514236|ref|NP_001133080.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|197631861|gb|ACH70654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Salmo salar]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   + + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
               L +  TRELA Q+ +E E    Y  T V  AV  GG+S+ ++   L+ N  HIVVG
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPT-VKAAVFFGGLSIKKDEDVLKKNCPHIVVG 170

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+   IR K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+
Sbjct: 171 TPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATL 230

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + V +  E +   H    Y   L   S+++  + ++L        
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKD-SEKNRKLFDLLDVLEFNQV 289

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +       +++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 290 VIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG 349

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  + +V + ++  + +  LHR  R GR G KG++V
Sbjct: 350 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 387


>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
           pisum]
          Length = 615

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 173/346 (50%), Gaps = 9/346 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-- 68
           I   LS++G    T +Q   +   L  +D++  A TGSGKT+ F L L    L +  +  
Sbjct: 185 IMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLLMFCLEQEIKLP 244

Query: 69  FSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQ 122
           F P   P  L I P+RELA Q    +   + +L       +  C  IGG+ V      ++
Sbjct: 245 FKPNEGPYGLIICPSRELAKQTFDIINHYMTFLERSNYPRLRSCLAIGGIPVFESLDVIK 304

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G HI+V TPGRL D +  K +N+   + + +DEAD M+D+GF +D+  I      +R+ 
Sbjct: 305 RGVHIMVATPGRLMDMLDKKMINLEVCRYLCMDEADRMIDMGFEEDVRTIFSFFQGQRQT 364

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I   A++     + +N+        ++      V    +   ++  L+  
Sbjct: 365 LLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVIQEVEYVKQEAKVVYLLECLK-K 423

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F   +  V    + L     + VA+ G   Q+ERS ++   R G+  V +ATD
Sbjct: 424 TTPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSKSVDAFRKGQKDVLVATD 483

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VA++G+D  +++ VI+ ++  + EN +HR GRTGR+G+ G++   I
Sbjct: 484 VASKGLDFEEIQHVINYDMPDDVENYVHRIGRTGRSGKTGIATTFI 529


>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
 gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 173/338 (51%), Gaps = 11/338 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL     + P  
Sbjct: 307 GLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPILERLL-----YRPKK 361

Query: 74  APLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            P    + + PTRELA+Q       L + T +   + +GG+S+  +  +L+    +V+ T
Sbjct: 362 VPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVVIAT 421

Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT++
Sbjct: 422 PGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMT 481

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHGAKNA 247
            ++  L +      VR+   S+ +    +    V +     S R+  +++I +    +  
Sbjct: 482 SSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGYLLHICKTIYTERV 541

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   +    +   +          L G ++Q +R  +++  RDG+    +ATD+A+RG
Sbjct: 542 IIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGKVNFLLATDLASRG 601

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  ++ VI+ E    PE  +HR GRT RAGR G ++
Sbjct: 602 LDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAI 639


>gi|325179717|emb|CCA14120.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 693

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 190/380 (50%), Gaps = 49/380 (12%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP---- 75
           + + T VQ + +   L  KDV V+A TGSGKT+AF L LA TL ++   +     P    
Sbjct: 23  FTHTTPVQSSTIPHFLTGKDVCVNACTGSGKTLAFLLPLAQTLYSKIINYKSIHIPTKNC 82

Query: 76  ------LALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGG----VSVHRERRDLQN 123
                 +A+ ++PTRELA Q+    E  + +    V   + +GG    + + R   +   
Sbjct: 83  NTNPKVVAMILSPTRELAKQIHSLCEQFFTRVLPQVFTGLFVGGNATEMDLQRIIDETMG 142

Query: 124 GAHIVVGTPGRLCD-----HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              ++VGTPGR+ D       +   LN+   + ++LDEAD +LDLGF+ +I+ IL   PK
Sbjct: 143 KCLVMVGTPGRILDIWTRFAKKNTPLNVEDFEMLILDEADTLLDLGFKQEIDQILQYVPK 202

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-------------DYR-AV 224
           +RR  +FSAT +  +  LA+   ++ + +++  E+     I             D R +V
Sbjct: 203 QRRTGLFSATQTQEVRDLARAGLRNPIVISVQVESGSQQVIPTTLNNYYVVVEHDQRLSV 262

Query: 225 LVALSDRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAE-----HLFQ----- 270
           LV        I N ++  G        IVF ST A+V  F  +L       H+       
Sbjct: 263 LVKFLSDAFGIGNPVKDEGMAVSEFKCIVFISTCAAVDFFGTILKHLPNFCHVLNGTTGD 322

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           +V L G++ Q++R +  +  ++ ++ V I TDV ARGIDLPD++ ++  +   +P   +H
Sbjct: 323 IVLLHGKMVQKKRVSNYKRFQEIKSGVLICTDVVARGIDLPDVDWILQYDPPQDPNFFVH 382

Query: 331 RSGRTGRAGRKGMSVFVIPQ 350
           R GRT RAGR G ++  I Q
Sbjct: 383 RIGRTARAGRTGNALSFISQ 402


>gi|320585934|gb|EFW98613.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 572

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/347 (31%), Positives = 178/347 (51%), Gaps = 26/347 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           TS+Q+  +   L   D +  ++TGSGKTVAF + +      +       SA  AL + PT
Sbjct: 162 TSIQKGCIPAILSGDDCIGGSRTGSGKTVAFAVPVLQAWATD------PSAIFALVLTPT 215

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  +   + A   +   +  GG  +  +   L    HIV+ TPGRL DHIR  G
Sbjct: 216 RELALQIYEQFLAISAPQPLKAVLVTGGADMRAQATALARRPHIVIATPGRLADHIRTSG 275

Query: 144 ----LNISHLKAVVLDEADEMLDLG------FRDDIEFILDS--SPKKRRMLMFSATISP 191
                 +  ++ VVLDEAD +L  G         D+E  L +   P KR+ L+F+AT++P
Sbjct: 276 EDTVCGLRRVRFVVLDEADRLLAGGEEGSGSMLPDVEECLGALPPPGKRQTLLFTATVTP 335

Query: 192 ---AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAI---VNILRYHG 243
              A+ T+ +   +  V V              R +   V ++ R++ +   ++      
Sbjct: 336 EVRALKTMPRAPGRPPVFVCEVETQAPAIPTTLRQLYLDVPVTHREHYLHVFLSTTHNEA 395

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+FC+  A+ +    +L     +V AL G+L Q++R++ L   R   AR+ +ATDV
Sbjct: 396 LPAVIIFCNRTATAAYLHHLLRLLGHRVTALHGKLPQRQRTDNLGRFRAAAARILVATDV 455

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           AARG+D+PD+ LV++ ++   P++ +HR GRT RAGR G +V  + Q
Sbjct: 456 AARGLDIPDVALVVNYDVPRQPDDYIHRVGRTARAGRTGEAVTFVGQ 502


>gi|62897383|dbj|BAD96632.1| HLA-B associated transcript 1 variant [Homo sapiens]
          Length = 428

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG+S+ ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNRV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
          Length = 461

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 172/338 (50%), Gaps = 19/338 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L  +D +  A+TGSGKT+AF L +   L  +           AL + PT
Sbjct: 35  TPIQQNCIPRILMGEDCIGCAKTGSGKTLAFVLPILQKLCED------PYGIFALVLTPT 88

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-K 142
           RELA Q+  +   +     +   V +GG+ +  +  +L    HIVV TPGRL DH+    
Sbjct: 89  RELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLDSCD 148

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
             ++  +K +VLDEAD +L   F   ++ I  + PK++++L FSAT++    TL K  Q 
Sbjct: 149 TFSLQKIKFLVLDEADRLLGGHFDGQLKTIFAALPKQKQVLFFSATMT---DTLDKVKQI 205

Query: 203 DAVRVNIASENRQH-----SDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCST 253
            +  V    E          ++D R VL      D+ +V +++     N     ++F  T
Sbjct: 206 ASAEVFTWQEEDDFGIATVKELDQRYVLCPKDVLDSYLVEVIKTFRTTNENGSIMIFTDT 265

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
                  + +L    F  VAL   + Q+ER  AL   +    ++ IATDVAARG+D+P +
Sbjct: 266 CKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGLDIPTV 325

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +L+I+  + + P+  +HR GRT RAG+ GMS+ +I  N
Sbjct: 326 QLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPN 363


>gi|74216552|dbj|BAE37719.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|194911317|ref|XP_001982328.1| GG11103 [Drosophila erecta]
 gi|190656966|gb|EDV54198.1| GG11103 [Drosophila erecta]
          Length = 683

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 204 AVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 261

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 262 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 321

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 322 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 381

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 382 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 440

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 441 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 500

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 501 DIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLM 541


>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
 gi|121742543|sp|Q0CZN5|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
 gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
          Length = 821

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 172/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 310 NLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 367

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 368 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKK 424

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 425 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 484

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++  +  L +      VR+ + S+      +    V +     D  +  +L   
Sbjct: 485 MLFSATMTDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLC 544

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R   V      +   L G +SQ++R  +++  RDG+   
Sbjct: 545 KEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAF 602

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 603 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 652


>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
           AFUA_1G14990) [Aspergillus nidulans FGSC A4]
          Length = 814

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 173/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 304 NLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 361

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 362 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKK 418

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 419 RPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 478

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++ ++  L +      VR+ + ++      +    V +     D  +  +L   
Sbjct: 479 MLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLC 538

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R   V      +   L G +SQ++R  +++  RDG    
Sbjct: 539 KEVYTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNF 596

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+A+RG+D+  +E VI+ E   + E  +HR GRT RAGR G +  +
Sbjct: 597 LLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTI 646


>gi|38233802|ref|NP_939569.1| putative RNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38200063|emb|CAE49739.1| Putative RNA helicase [Corynebacterium diphtheriae]
          Length = 452

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 185/372 (49%), Gaps = 21/372 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I + LS  G V+   +QEA +   +  +D+L    TGSGKT  FGL +   L  +
Sbjct: 8   GLPSGIVQVLSRLGIVDPFPIQEAAIPDAISGRDILGRGPTGSGKTFTFGLPMIVRL--Q 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  S P  L + PTRELA QV   LE   +  G+ V   +GGVS+ R    L +  
Sbjct: 66  ESGVSKPSKPRGLILVPTRELAAQVRERLEEPASAMGLRVLEVVGGVSIKRHITSLASPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGR  D I    L++S ++   LDEAD+M D+GF   +  +L+ +PK  + L F
Sbjct: 126 DILVATPGRAQDLINQGKLSLSEVEISTLDEADQMADMGFLPQVTKLLELTPKTAQRLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-------DRD--NAIV 236
           SAT+   +  L   +  D V          HS    +A +  +S       DR+  N+IV
Sbjct: 186 SATLDGDVNKLVDRFMSDPV---------THSTTAVKATVETMSHYRFHVGDREARNSIV 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +     K  I+F  T+  V R  K L         L G+     R+ AL    DG   
Sbjct: 237 EKIAGRDGKT-IMFMRTKHGVDRQVKKLRRIGINAAGLHGDKGHNTRAAALAGFADGSVP 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D++LV+H +  +  +  +HR+GRT RAG  G  V ++  N +   
Sbjct: 296 VLVATDIAARGIDIDDVDLVVHVDPPAAHKAYVHRAGRTARAGTVGKVVTLVMDNQREEV 355

Query: 357 ERLFREANVSVV 368
           ++L  +A VS V
Sbjct: 356 DKLLGKAGVSPV 367


>gi|38372907|ref|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus]
 gi|61213001|sp|Q8VDW0|DX39A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
           box protein 39
 gi|18044894|gb|AAH20134.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Mus musculus]
 gi|74181505|dbj|BAE30021.1| unnamed protein product [Mus musculus]
 gi|74184027|dbj|BAE37049.1| unnamed protein product [Mus musculus]
 gi|74207612|dbj|BAE40052.1| unnamed protein product [Mus musculus]
 gi|74219249|dbj|BAE26758.1| unnamed protein product [Mus musculus]
 gi|74226811|dbj|BAE27051.1| unnamed protein product [Mus musculus]
 gi|148678969|gb|EDL10916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Mus
           musculus]
          Length = 427

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
 gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
          Length = 452

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 15/350 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   T +QE   +     KDV+  AQTG+GKT A+ L +   L      FS   
Sbjct: 15  AIDDLGFERPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPILRDL-----PFSKQQ 69

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTREL +QV  ++  L       V    GG +++ +R+ +Q G  I+V TPG
Sbjct: 70  HPRVLILVPTRELVLQVVEQITQLSKYINTRVLGVYGGANINTQRQAIQQGQDIIVATPG 129

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D      L +  +  +V+DE D MLDLGFR  +  I D  P+KR+ ++FSAT++  +
Sbjct: 130 RLYDLAISNSLKMKSIHKLVIDEVDVMLDLGFRFQLMNIFDVIPEKRQNILFSATMTEDV 189

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILR----YHGAKNAI 248
             L  ++ K+  ++++A       +I+  +        + N +  +L+    +H     +
Sbjct: 190 DALIYDFFKNPEKISVAVSGTPLDNIEQVSYATPNFFTKVNLLHTLLKDRETFH---KVL 246

Query: 249 VFCSTRASVSRFTKVLAEHLF-QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +F   + +     K L E    ++  +    +Q  R  +++   +G+ R+ +ATDV ARG
Sbjct: 247 IFVGFKRTADLLFKHLEEAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRILLATDVMARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
           +D   +  VI+ +    PEN +HR GRTGRA + G ++ F  P+  + + 
Sbjct: 307 LDFDKVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILFSTPKEQEAKG 356


>gi|224053943|ref|XP_002298050.1| predicted protein [Populus trichocarpa]
 gi|222845308|gb|EEE82855.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 17/352 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFS 70
           +AL+  GYV +T VQEA L+  L   KD +V A+TG GK+ AF L A+ + L A +    
Sbjct: 327 KALTAAGYVQMTRVQEATLSVCLEAGKDAMVKAKTGKGKSAAFLLPAIEAVLKARSSNAK 386

Query: 71  PASAPL-ALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHI 127
              +P+  L + PTRELA Q+  E    L    G+V+   +GG     ++R L+ +   I
Sbjct: 387 LRVSPIYVLILCPTRELASQIAAEANAILKYHDGIVMQTLVGGTRFKDDQRCLESDPCQI 446

Query: 128 VVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +V TPGRL DHI  K    +++  LK ++LDEAD +LDLGFR D+E I+D  P++R+ L+
Sbjct: 447 LVATPGRLLDHIENKSGLSMHLKGLKMLILDEADHLLDLGFRKDVEKIVDCLPRQRQSLL 506

Query: 185 FSATISPA---ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILR 240
           FSATI      I+ L    + D V     S     + I  ++ LV+  +    +V+ +L+
Sbjct: 507 FSATIPKEVHRISQLVLKREHDFVNTVGVSCMETPAKIK-QSFLVSPHELHFQVVHYLLK 565

Query: 241 YHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            H  K      IVFC+T    S    +L E    V  +     Q  R+      ++    
Sbjct: 566 EHIQKAPDYKVIVFCTTGMVTSLMYLLLREMKMNVREMHSRKPQLYRTRVSDEFQESNRL 625

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V + +DV+A G++ PD+ LVI   +  + E  + R GR G  G+ G  + ++
Sbjct: 626 VLVTSDVSACGMNYPDVTLVIQVGIPCDREQYIDRLGRIGHEGKDGGGILLL 677


>gi|326930446|ref|XP_003211358.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
           [Meleagris gallopavo]
          Length = 706

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 52/393 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L+ KD LV +QTGSGKT+A+G+ L  +L     
Sbjct: 122 PHLIATISTVLKIHSMTSVQKRTIPVLLQGKDALVRSQTGSGKTLAYGIPLVQSLQGMKS 181

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 182 KIQRSDGPYALVLVPTRELALQTFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 241

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRM 182
           I++ TPGRL DHI+  + ++    + +++DEAD +LDLGF  D+  I   L++  + R+ 
Sbjct: 242 ILISTPGRLVDHIKSTECIHFRRTQWLIIDEADRILDLGFEKDVTVILNALNAVRETRQN 301

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-----------------SDIDYRAVL 225
           ++ SAT++  +T LA     D +R++IA E ++                   D +  AV 
Sbjct: 302 VLLSATLTEGVTRLADISLNDPIRISIADEVQKSLKPALQIEKEANGSSNCMDQENFAVP 361

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
             L      + + LR             Y   +  I+F S+   V    ++L   L    
Sbjct: 362 EKLKQYFVMVPSKLRLVTLAAFILEKCMYEKQRKMIIFFSSCEQVEFHYELLVNVLSGEL 421

Query: 269 -------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                         Q + L G + Q+ER+   Q        + + TDVAARG+DLP +  
Sbjct: 422 SEQPKRSPVSSVQLQFLRLHGNMEQEERTEVFQEFLKSNTGILLCTDVAARGLDLPQVMW 481

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++     ++P   +HR GRT R G  G S+ V+
Sbjct: 482 IVQYNAPASPAEYIHRIGRTARIGCHGNSLLVL 514


>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 805

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 188/384 (48%), Gaps = 14/384 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL     + P   
Sbjct: 290 LASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLL-----YRPKKV 344

Query: 75  PLA-LAI-APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P   +AI  PTRELAVQ       L + T +  A+  GG S   +   L+    +V+ TP
Sbjct: 345 PTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRPDVVIATP 404

Query: 133 GRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++FSAT++ 
Sbjct: 405 GRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTMLFSATMTS 464

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAI 248
           ++  L +      VR+ + ++    + +    V +     D     ++ I      +  I
Sbjct: 465 SVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVI 524

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   +    R   V A    +   L G +SQ++R  +++  R G++   +ATDVA+RG+
Sbjct: 525 VFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLATDVASRGL 584

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANV 365
           D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +    + ++A +  R+   
Sbjct: 585 DIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKASRDQGA 644

Query: 366 SVVWEPAPSVEAIRERDAQRILQD 389
            VV    P  E  R     + L+D
Sbjct: 645 KVVSRQVPIEETDRWMKKIKDLED 668


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 175/350 (50%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 491 GYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVHG--VSPARQRKSY 548

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+AL +APTRELAVQ+  E+  L   T +   V  GG      R   +    I+V  PGR
Sbjct: 549 PIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGT-----RYPQRFEQDILVACPGR 603

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D    + L+ S +K ++LDEAD ML++GF + IE ++ S      +  +R+  MFSAT
Sbjct: 604 LRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVDERQTFMFSAT 663

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
               I  LAK Y ++    + +        +I      V  +++ + ++ I+  H   + 
Sbjct: 664 FPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM 723

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           + +F  T+       + L         + G+  QQ+R  AL+  +     + +ATDVA+R
Sbjct: 724 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 783

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+PD+  V+  +L    ++  HR GRTGRAG KG++     +N +R A
Sbjct: 784 GLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLA 833


>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908200|ref|ZP_07125666.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
 gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894627|gb|EFK87983.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
          Length = 467

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 171/335 (51%), Gaps = 9/335 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + S +  E+       
Sbjct: 28  AIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKINPEDQTVQ--- 84

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
              A+   P+RELA Q+    + L  YA   + +   +GG     +   L +    +V+G
Sbjct: 85  ---AVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIG 141

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    P   +M++FSATI 
Sbjct: 142 TPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHFPDDLQMMVFSATIP 201

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y ++ V   I +E   + D+D   +     DR+  I  +L       A+VF
Sbjct: 202 QKLRPFLKKYMENPVIEEIPTEAVINPDVDNWLMSTKGQDRNQLIYRLLTLGEPYLALVF 261

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+      T+ L     +V  + G L  + R   ++ +RD   +  +ATD+AARGID+
Sbjct: 262 ANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGIDI 321

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             + LVI+ +L ++ E  +HR GRTGR G KG ++
Sbjct: 322 DGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAI 356


>gi|315053519|ref|XP_003176133.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
 gi|311337979|gb|EFQ97181.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
          Length = 441

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/353 (30%), Positives = 187/353 (52%), Gaps = 24/353 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L     L        P +
Sbjct: 72  AITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFALTTLHQLEP-----VPGT 126

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTG-----VVVAVCIGGVSVHRERRDL---QNGA 125
             + L + PTRELA Q+  E    YA+       V  AV  GG  + ++   L   +   
Sbjct: 127 CSI-LVMCPTRELAYQIKDE----YARFSKYMPDVKTAVFYGGTPIQKDIEILSSKETHP 181

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRMLM 184
           +I+VGTPGRL   +R K L++ ++K+ VLDE D+MLD    R D++ I  S+P +++++M
Sbjct: 182 NIIVGTPGRLNALLRDKKLSLRNIKSFVLDECDKMLDQKDMRADVQEIFRSTPSEKQVMM 241

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT++  I  + K + ++ + V +  + +   H    Y  + ++ ++++  +  +L   
Sbjct: 242 FSATLAQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQY-YIKLSEAEKNRKLNELLDNL 300

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  +    +   K+L E  F  +A+   +SQ+ER    +  +D   R+C+ATD
Sbjct: 301 EFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIKRYREFKDFNKRICVATD 360

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--QNMQ 353
           V  RGID+  + L I+ ++  + ++ LHR GR GR G KG+S+  +   +NMQ
Sbjct: 361 VFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGLSISFVSDEENMQ 413


>gi|17505370|ref|NP_492779.1| hypothetical protein B0511.6 [Caenorhabditis elegans]
 gi|15375231|gb|AAC17654.2| Hypothetical protein B0511.6 [Caenorhabditis elegans]
          Length = 544

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 178/331 (53%), Gaps = 8/331 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+   G+  +T +Q   ++P L  KDVL SA+TGSGKT+AF L     L   N  +   
Sbjct: 81  KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLN--WKQH 138

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + ++PTREL++Q    L  L   + +   + +GG +   E+  L  G  I+V TP
Sbjct: 139 NGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATP 198

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++      + ++K +++DEAD +LD+GF  +++ +L   PK+R+ ++FSAT SP
Sbjct: 199 GRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSP 258

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            +  L K     + VRV++  E  + + ++   +  +VA SD R   +   L+ +  K  
Sbjct: 259 KVDELVKLALHSNPVRVSV-HEKAEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKV 317

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L       +++ G+  QQ+R+            + + TDVAARG
Sbjct: 318 MVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAARG 377

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +D+P ++ ++  + +  P   +HR GRT R 
Sbjct: 378 LDIPAVDWIVQYDPTDEPREYIHRVGRTARG 408


>gi|328870453|gb|EGG18827.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 897

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 183/348 (52%), Gaps = 10/348 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I ++  + L E+ Y+++T +Q + +   L  +D+L +A+TGSGKT+AF + +   L    
Sbjct: 137 ISKLTMKGLDEKKYIDMTDIQRSSIPHSLCGRDILGAAKTGSGKTLAFIVPMLELLY--R 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + ++      A+ ++PTRELA+Q+   L            + IGG +V  E++ + N  +
Sbjct: 195 NSWNIEDGVGAIILSPTRELAIQIFDVLRDAGKYHSFSAGLIIGGKNVDNEKKKI-NEMN 253

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL  H+   +G   ++L+ ++LDEAD +LD GF   +  I+ + P  R+ L+F
Sbjct: 254 ILIATPGRLLQHMDETEGFRCNNLQMLILDEADRILDFGFTKTLNSIVQNLPSSRQTLLF 313

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT + ++  LA+   ++   V++   +   +  ++    +   L D+ N + + L  H 
Sbjct: 314 SATQTKSVKDLARLSLREPEYVSVYDRDLMSTPANLTQTVMFSTLEDKINLLYSFLHSHL 373

Query: 244 AKNAIVFCSTRASVSRF---TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            K  IVF +T   V RF   T  L     ++  L G++ Q  R +  Q   D +     A
Sbjct: 374 TKKTIVFLTTCKQV-RFIYETFYLINPGCRLFQLHGKMKQTSRLDVFQQFCDEKMGTLFA 432

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARG+D P ++ VI  +   +    +HR GRT R   +G S+ V+
Sbjct: 433 TDVAARGLDFPTVDWVIQMDCPDDIATYIHRVGRTARNNTEGNSLTVL 480


>gi|326503202|dbj|BAJ99226.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 591

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 190/368 (51%), Gaps = 22/368 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F  +P  ++  +A+ E  Y +L  +Q   +   L  +DV+ +A+TGSGKT+AF   + +
Sbjct: 98  LFSELPISELTAKAIREMNYTHLAQIQARSIPHLLEGRDVMGAAKTGSGKTLAF--LIPA 155

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L  N  FSP +    + + PTRELA+Q   V +EL   +++T   +   IGG     E
Sbjct: 156 IELLYNLHFSPRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQT---LGYVIGGNGRRTE 212

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L  G +++V TPGRL DH++  KG     LK +++DEAD +L+  F +D++ I    
Sbjct: 213 ADQLAKGVNLLVATPGRLLDHLQNTKGFIYKRLKCLIIDEADRILEQNFEEDMKQIFKRL 272

Query: 177 PKKRRMLMFSATISPAITTLAK-NYQKDAVR--------VNIASENRQHSDIDYRAVLVA 227
           P+ R+ ++FSAT +  +   AK +++K+  R        V+    N     +     ++ 
Sbjct: 273 PQNRQTVLFSATQTKEVEDFAKLSFEKNEERKEKPVYISVDDGKSNATVEGLQQGYCVIP 332

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              R   +   L+   +K  +VF S+ +SV    ++L     +   + G+  QQ+R+   
Sbjct: 333 SDKRFLVLYAFLKKKQSKKVMVFFSSCSSVKFHAELLNFLQIECEDIHGKQKQQKRTTTF 392

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSV 345
                    + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R   G+    +
Sbjct: 393 FNFCKADKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSALL 452

Query: 346 FVIPQNMQ 353
           F++PQ ++
Sbjct: 453 FLLPQELK 460


>gi|301771296|ref|XP_002921018.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Ailuropoda
           melanoleuca]
          Length = 427

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + +   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 394


>gi|196230330|ref|ZP_03129193.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225927|gb|EDY20434.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 443

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 168/337 (49%), Gaps = 3/337 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + GY   T +Q A +   L   DV+  AQTG+GKT AF L +   LLA     S   
Sbjct: 15  ALKDAGYTEPTPIQGAAIPKILSGSDVIGIAQTGTGKTAAFVLPMLQ-LLANRPPVS-GR 72

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+              +A   GGV    + + L++   +++  PG
Sbjct: 73  KIRALVLAPTRELAAQIEENARAYARYVPFRMATIFGGVGERPQIQALRDNVELIIACPG 132

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ +  + + L+ +VLDEAD MLD+GF  DI  I+   P+KR+ L+FSAT+S  I
Sbjct: 133 RLLDLMQQRHGDFTGLEFLVLDEADRMLDMGFLPDIRRIVKQLPRKRQTLLFSATLSGEI 192

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             L   +  +   V +   +     +   A  V    +   +  +L   G ++ +VF  T
Sbjct: 193 EALTHEFLHNPATVQVGRRSNPAETVTQVAYEVPKHLKLALLAALLNEPGMESVLVFSRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + L     +   L    +Q +R  AL   + G  RV +ATD+AARGID+  +
Sbjct: 253 KHGADRIARKLESSGIKSATLHSNRTQNQRLRALAAFKAGEVRVLVATDIAARGIDVDGI 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIP 349
             VI+ +     E+ +HR GRTGRA   G ++ FV P
Sbjct: 313 SHVINYDFPMTNEDYVHRIGRTGRANAVGDALSFVCP 349


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 171/328 (52%), Gaps = 11/328 (3%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP--ASAPLALAIA 81
           T +Q   L   L  +D++  A +G GKT+ F L      + E  +        P AL + 
Sbjct: 132 TPIQMQGLPTVLMGRDIIGVAPSGQGKTLVFLLPALLQCVDEQMKMPIIRGEGPFALILL 191

Query: 82  PTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ ELA+ +  EL   Y +        G+   + IGG+ +  + + ++NG HIV+GTPGR
Sbjct: 192 PSHELAI-LTYELAKQYCQKFQKKGFPGIHCLLGIGGMDMSSQLQSIKNGVHIVIGTPGR 250

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +  K +N+   + +VLDEAD MLD  F  +I  IL+     R+ ++FSAT+   I 
Sbjct: 251 ISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIRNILEHFTGPRQTMLFSATLPKKIQ 310

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
              K    D + +N+    + + ++    + V   ++ + +++ L+       ++F   +
Sbjct: 311 EFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEEKLHYLLDSLK-KTTPPVVIFSEHQ 369

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L     +VV L G   Q++R+ AL+   +G+  V +ATDVAA+G+D PD++
Sbjct: 370 NDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQFLNGQKDVLVATDVAAKGLDFPDIK 429

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKG 342
            VI+ ++  + E+ +HR GRTGR G+ G
Sbjct: 430 HVINYDMPKDIESYIHRIGRTGRQGKTG 457


>gi|221221068|gb|ACM09195.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|223647064|gb|ACN10290.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
 gi|223672933|gb|ACN12648.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
          Length = 427

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   + + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
               L +  TRELA Q+ +E E    Y  T V  AV  GG+S+ ++   L+ N  HIVVG
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPT-VKAAVFFGGLSIKKDEDVLKKNCPHIVVG 170

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+   IR K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+
Sbjct: 171 TPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATL 230

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + V +  E +   H    Y   L   S+++  + ++L        
Sbjct: 231 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKD-SEKNRKLFDLLDVLEFNQV 289

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +       +++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 290 VIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG 349

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +D+  + +V + ++  + +  LHR  R GR G KG++V
Sbjct: 350 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 387


>gi|74204289|dbj|BAE39902.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|168023770|ref|XP_001764410.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684274|gb|EDQ70677.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 197/399 (49%), Gaps = 64/399 (16%)

Query: 14  ALSERGYVNLTSVQE-AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR---- 68
           AL +  +   T +QE  I     + KDV+ +A+TGSGKT+AFGL +   LL ++++    
Sbjct: 120 ALMKLKFSKPTHIQEKCIAAAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDDHEKIQRK 179

Query: 69  --FSPAS-----APL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             F  AS      PL AL + PTRELA+QV   L      T   V   +GG+++ +++R 
Sbjct: 180 SGFDKASKKQSGGPLRALIVTPTRELALQVCDHLRAAAQFTNFNVVPIVGGMALQKQQRL 239

Query: 121 LQNGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L+    IVVGTPGRL + +       L+++ L   VLDEAD M++ G   +++ I+D  P
Sbjct: 240 LRYQPQIVVGTPGRLWELMSAGEAHLLDLAQLSFFVLDEADRMVERGHFKELQSIMDMLP 299

Query: 178 K----------------------KRRMLMFSATIS--PAI------------TTLAKN-- 199
           K                      KR+ L+FSAT+S  P              +T  KN  
Sbjct: 300 KTGPEDTTMKEDFTETIVIEPVKKRQTLVFSATLSLPPGFKKKLKRGFFNDKSTSKKNEY 359

Query: 200 ----------YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
                      + +AV +++ +++     ++   +     ++D  +  IL+ HG    +V
Sbjct: 360 SVASLIQRAAMRDNAVIIDLTTKDVLARKLEESVIQCRDEEKDAYLYYILKVHGCGRTLV 419

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC++ A++   T +L      V  L  ++ Q++R  A+   +     V +ATDVAARG+D
Sbjct: 420 FCTSIAALRHVTAILRLLQVSVWPLHAQMQQKQRLKAMDRFKSADDCVMVATDVAARGLD 479

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  +  VIH +L  + E  +HRSGRT RA   G S+ +I
Sbjct: 480 VTGIRTVIHYQLPHSAEMYVHRSGRTARADTDGCSIAII 518


>gi|2500519|sp|Q40466|IF413_TOBAC RecName: Full=Eukaryotic initiation factor 4A-13; Short=eIF-4A-13;
           AltName: Full=ATP-dependent RNA helicase eIF4A-13
 gi|485941|emb|CAA55741.1| unnamed protein product [Nicotiana tabacum]
          Length = 355

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/303 (33%), Positives = 161/303 (53%), Gaps = 7/303 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P  +  DV+  AQ+G+GKT  F     S +L + D +S      AL
Sbjct: 59  GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF----CSGVLQQLD-YSLVECQ-AL 112

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D 
Sbjct: 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDM 172

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + +
Sbjct: 173 LRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 232

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
            +    VR+ +  ++     I    V V   + +   + ++        +++F +TR  V
Sbjct: 233 KFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKV 292

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI
Sbjct: 293 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 352

Query: 318 HAE 320
           + +
Sbjct: 353 NYD 355


>gi|313884071|ref|ZP_07817837.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620518|gb|EFR31941.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 451

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/353 (31%), Positives = 176/353 (49%), Gaps = 11/353 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+E  +  +T VQ  ++   L+ +D++V +QTGSGKT AF L +   +   
Sbjct: 7   HLKEYIQIALNEANFTTMTPVQTEVIPQALKGEDLIVQSQTGSGKTHAFLLPILQNI--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDL-- 121
           N+      A +    AP+RELA Q+ +    L   A   + +   IGG    R+   L  
Sbjct: 64  NEDVQEVQAVIT---APSRELATQLYQVASSLIQAADKPIRLENYIGGTDKQRQLDQLGP 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V+GTPGR+ D +    L +   K +V+DEAD  LDLGF   ++ I    P+  +
Sbjct: 121 DKQPQLVIGTPGRIFDLMSDNALWVQTAKILVVDEADMTLDLGFLKIVDEIASRMPQDLQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M+ FSAT+   +      Y      V I  +      I+   +      R+     +L  
Sbjct: 181 MMAFSATVPQELRVFLNKYMVAPKVVTIKPKQVISETIENYLINTKGKSREELTYQLLTM 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VFC+T+A   + +  L E   +V  + G++S +ER   ++ +++   +  +AT
Sbjct: 241 GQPYLALVFCNTKAYADQMSLFLKEKGLKVATIHGDISSRERKRVMKQIQNLDFQYVVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
           D+AARGID+P   LVI+ EL    E  +HR GRTGR G +G +  FV P + Q
Sbjct: 301 DLAARGIDIPGTSLVINTELPMELEYFVHRVGRTGRNGLEGRAFTFVTPDDDQ 353


>gi|261345453|ref|ZP_05973097.1| ATP-dependent RNA helicase SrmB [Providencia rustigianii DSM 4541]
 gi|282566500|gb|EFB72035.1| ATP-dependent RNA helicase SrmB [Providencia rustigianii DSM 4541]
          Length = 408

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 165/315 (52%), Gaps = 8/315 (2%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +DVL SA TG+GKT AF L     LL    + S    P  L + PTRELA+QV  + +  
Sbjct: 4   RDVLGSAPTGTGKTAAFLLPAIQHLLDFPRKKS--GPPRVLIVTPTRELAMQVADQAKEF 61

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
            A   + VA   GGV+             IVV T GRL  +I+ +  +   ++ ++LDEA
Sbjct: 62  CAHNHLDVATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVEILILDEA 121

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQH 216
           D MLD+GF  DIE I   +  +++ ++FSAT+   AI   A+   +D V ++     R+ 
Sbjct: 122 DRMLDMGFAHDIETIAAETRWRKQTMLFSATLEGDAIRDFAERLLEDPVEISADPSRRER 181

Query: 217 SDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
             I    YRA    L  +   + ++L+      +IVF   R  V    + L     +   
Sbjct: 182 KKIQQFYYRA--DNLEHKTALLCHLLKQKDVTKSIVFVRKRERVREVVQWLRTAGIEPCY 239

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + GE+ Q +R+ A++ M  G+  V +ATDVA+RG+D+ ++  V + +L    +  LHR G
Sbjct: 240 IEGEMVQAKRNEAVRRMVTGQVNVLVATDVASRGLDIENVSHVFNFDLPRTADVYLHRIG 299

Query: 334 RTGRAGRKGMSVFVI 348
           RTGRAGRKG ++ ++
Sbjct: 300 RTGRAGRKGTALSLV 314


>gi|319651577|ref|ZP_08005704.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
 gi|317396644|gb|EFV77355.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
          Length = 410

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 180/347 (51%), Gaps = 12/347 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I EA+ + G+   T +QE ++   L+ +  +  +QTG+GKT ++ L +       
Sbjct: 10  NLKPFIIEAVKDFGFFEPTEIQERMIPAVLKGESAIGQSQTGTGKTHSYVLPILQ----- 64

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  P+   + A+  APTRELA Q+  E+    E       +     IGG    R    
Sbjct: 65  --KVDPSRQEVQAIITAPTRELANQIYHEILKVTEHCPEGEEITARCYIGGTDKQRTIEK 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR+ D ++ + L +   + +++DEAD MLD+GF +D++ I    P+K 
Sbjct: 123 LKRQPHVVVGTPGRINDLVKEQALFVHTAEILIVDEADLMLDMGFIEDVDQIAARMPEKL 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +ML+FSATI   +    K Y ++   V++  +    ++I++  +     ++   +   L 
Sbjct: 183 QMLVFSATIPEKLKPFLKKYMENPKYVHVEPKQAAAANIEHWLLPSRHRNKVELVYQALT 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AIVF +T+         L     +V  + G+L+ +ER   ++ + D   +  +A
Sbjct: 243 SLNPYLAIVFTNTKKKADEVADGLISKGLKVGRIHGDLNPRERKKMMKQILDLEFQYIVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           TD+AARGID+  +  VI+ EL ++ +  +HR GRT RAG  G++V V
Sbjct: 303 TDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGFSGIAVTV 349


>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|160380603|sp|A6QUM7|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
 gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 900

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 183/374 (48%), Gaps = 42/374 (11%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++ +G+   T +Q   +   L ++DV+  A+TGSGKT AF + +   L + + +F   
Sbjct: 99  KAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKF--- 155

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL ++P+RELA+Q  + ++ L   T +   + +GG S+  +   + +   I++ TP
Sbjct: 156 -GSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATP 214

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR         L++S ++ VV DEAD + ++GF   +  IL   P  R+ L+FSAT+  +
Sbjct: 215 GRFLHLKVEMSLDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSRQTLLFSATLPKS 274

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR------------ 240
           +   A+   ++ + + + +E++   D+      V  S+++ A++++L             
Sbjct: 275 LVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLHEVIKIPTGETEA 334

Query: 241 --------YHGAK------------------NAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
                    H  K                  + I+F +T+  V   T +L    F V   
Sbjct: 335 LKRAKEEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLTSILRTSGFAVSYA 394

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G L Q  R   +Q  RDG   + + TDVAARGID+P L  VI+ +  S P+  +HR GR
Sbjct: 395 YGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGR 454

Query: 335 TGRAGRKGMSVFVI 348
           T RAG+ G S  +I
Sbjct: 455 TARAGKTGWSYSLI 468


>gi|74214685|dbj|BAE31182.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDHETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 174/339 (51%), Gaps = 5/339 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ G+   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 251 DLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 311 PHELE-LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+   +   + + L
Sbjct: 370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K    V I     + SD+      V    + + ++ IL    
Sbjct: 430 MFSATFPEEIQRMAGEFLKLRF-VAIGIVGGRCSDVKQTIYEVNKYAKRSKLIEILSEQ- 487

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 488 ADGTIVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFKNGSMKVLIATSV 547

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTG  G  G
Sbjct: 548 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNWG 586


>gi|239631820|ref|ZP_04674851.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526285|gb|EEQ65286.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 428

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A+  P   ++DV+  A TGSGKT+AFGL L   ++       P      L
Sbjct: 15  GYTEQTPIQTAVYQPLKADEDVVGLAPTGSGKTLAFGLPLLEKMV-------PGDGLQLL 67

Query: 79  AIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +AP++ELA+Q  R++   YAK  G+ V   IG  +V R+   L+    +VV T GRL +
Sbjct: 68  ILAPSQELAIQT-RDVLTPYAKDIGITVQGVIGSANVKRQLDRLKEKPEVVVATAGRLLE 126

Query: 138 HIRGKGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
            I+ + L +  L+ +V+DEADEML D GF D +  I  ++P + ++  FSAT SP    L
Sbjct: 127 LIQSRKLKLDGLQTLVVDEADEMLRDPGF-DQVREIAAAAPAEAQLAFFSATPSPYFKEL 185

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFCSTR 254
            K + K    +++ S +R   ++ +   L   +DR + +  +  L +     A+VF +  
Sbjct: 186 HKWFGKTPDIIDVRSIDRTRGEVRH---LFLQTDRAHQVDWLRTLAHTDGFKALVFFNQN 242

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           +S+ R   +L     +   LS E  Q  R  AL   R GR  + + TD+A RG+D+P L 
Sbjct: 243 SSLERVAGILRHQAVRFAVLSREGRQTVRQKALTDFRRGRITLLLVTDMAGRGLDIPKLP 302

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V++ E     E  +HR+GRTGR G  G+ V
Sbjct: 303 AVVNFEPPKRAEVYIHRAGRTGRMGEAGLVV 333


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 169/347 (48%), Gaps = 37/347 (10%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           +D++  A+TGSGKT+AF L     +  +  R      P  L + PTRELA QV +E+   
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHITKQPHR-QRGEGPSVLVLLPTRELAQQV-QEVSID 224

Query: 98  YAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +  + G+ +    GG S   + RDL+ G  I V TPGRL D +     N+     +VLDE
Sbjct: 225 FCHSLGLKMTCLFGGASKGPQARDLERGVDIAVATPGRLLDFLDNGTTNMKRCSYLVLDE 284

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF   I  I+      R+ LMFSAT    + +LA ++QKDA  +N+ S     
Sbjct: 285 ADRMLDMGFEPQIRKIIGQIRPDRQTLMFSATWPKEVRSLASDFQKDAAFLNVGS----- 339

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAK----------------NAIVFCSTRASVSRF 260
                  + +A +     +V++L  H  +                  I+F  T+      
Sbjct: 340 -------LELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADEL 392

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL------PDLE 314
           T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATDVAARG++        D++
Sbjct: 393 TRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATDVAARGLEFWVQVHVDDIK 452

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VI+ +  +N E+ +HR GRTGR  +KG +          +A+ L +
Sbjct: 453 FVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAKDLLK 499


>gi|325068862|ref|ZP_08127535.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 470

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 163/296 (55%), Gaps = 7/296 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+++ G+V  T++Q+  +   L  +DV+  AQTG+GKT AFGL L   + + +
Sbjct: 181 LPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRD 240

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           +         AL +APTRELA+Q    +  + A++ G+ V    GG     +   L+ GA
Sbjct: 241 NVVQ------ALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIGALKGGA 294

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I +S P  RR  +F
Sbjct: 295 QVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTDRRTALF 354

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L    A+
Sbjct: 355 SATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDAE 414

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +AT
Sbjct: 415 AAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVAT 470


>gi|255732942|ref|XP_002551394.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
 gi|240131135|gb|EER30696.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
          Length = 880

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 193/393 (49%), Gaps = 22/393 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI + L    +   +S+Q   L   L  +DV+  A+TGSGKT+++ L +   +  +
Sbjct: 298 NISSVIHDKLK---FEKPSSIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMIRHI-QD 353

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +      P+ L ++PTRELA+Q+ +E L +      + V  C GG S+  +  +L+ G
Sbjct: 354 QRKLESNEGPIGLILSPTRELALQIQKEILHFTKDNPNLRVCCCYGGASIESQINELKKG 413

Query: 125 AHIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             IVV TPGR+ D +    G+  N+     VVLDEAD M DLGF   +  I       ++
Sbjct: 414 VEIVVATPGRMIDLLAANSGRVTNLKRTTYVVLDEADRMFDLGFEPQVTKIFTQIRPDKQ 473

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-------VALSDRDNA 234
            ++FSAT    +  LAK    + V + +   +   S+I  + VL       +  ++R N 
Sbjct: 474 TVLFSATFPKKMEVLAKKILVNPVVIIVGGISVVASEIKQKVVLFNHTSDDIYKTERMNK 533

Query: 235 IVNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +  +L  +   N     +VF   ++        L    +  VAL G   Q +R  A++  
Sbjct: 534 LYEVLSEYQMFNPKSKILVFVEKQSDADELVTDLLRSGYPSVALHGGKDQMDRKYAIKEF 593

Query: 291 --RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
              D    + +AT VAARG+D+  L LVI+ +  ++ E+ +HR GRTGRAG KG ++  +
Sbjct: 594 SSNDSGLNILVATSVAARGLDVKSLGLVINFDPPNHMEDYVHRVGRTGRAGSKGQAITFV 653

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
             N +R    L +   +S   E  P + AI ++
Sbjct: 654 CSNQEREITSLVKALRLSKA-EVDPDLAAIADK 685


>gi|223933109|ref|ZP_03625101.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|302024360|ref|ZP_07249571.1| helicase [Streptococcus suis 05HAS68]
 gi|330833357|ref|YP_004402182.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898170|gb|EEF64539.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307580|gb|AEB81996.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 447

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 173/338 (51%), Gaps = 9/338 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL E  +V  T VQE ++   L  +D++  ++TGSGKT  F + +   L  E D+  
Sbjct: 12  IQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLSEELDQVQ 71

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQ-NGAHI 127
                 A+  AP+RELA Q+ +    L + + + V V   +GG   +R+   LQ +  HI
Sbjct: 72  ------AVITAPSRELATQIYQAARQLASHSDIEVRVTNYVGGTDKNRQIDKLQASQPHI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  + ++FSA
Sbjct: 126 VVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           TI   +    K Y  + V   I +       I+   +     DR+  I+ + +      A
Sbjct: 186 TIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQILEVTKLMQPYLA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +T+         L  +  +V  + G++  +ER   +  +++   +  +ATD+AARG
Sbjct: 246 MIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQYIVATDLAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +  VI+  +  +    +HR GRTGR G  G+++
Sbjct: 306 IDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAI 343


>gi|57525164|ref|NP_001006185.1| ATP-dependent RNA helicase DDX55 [Gallus gallus]
 gi|82197869|sp|Q5ZLN8|DDX55_CHICK RecName: Full=ATP-dependent RNA helicase DDX55; AltName: Full=DEAD
           box protein 55
 gi|53129029|emb|CAG31355.1| hypothetical protein RCJMB04_5g4 [Gallus gallus]
          Length = 591

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 24/356 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL + G+  +T VQ A +   +  KDV   A TGSGKT+AF + +   LL   ++     
Sbjct: 23  ALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ 82

Query: 74  APLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVV 129
              A+ I PTRELA+Q+   L      + K   ++   IGG +   +     ++G +I+V
Sbjct: 83  VG-AIIITPTRELAIQIDEVLTHFTKHFPKFSQIL--LIGGRNPMEDVEKFKEHGGNIIV 139

Query: 130 GTPGRLCDHIRGK--GLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            TPGRL D  R K  GL+++     L  +VLDEAD +LD+GF   +  IL   PK+RR  
Sbjct: 140 ATPGRLEDLFRRKADGLDLASCVKSLDVLVLDEADRLLDMGFESSLNAILAFLPKQRRTG 199

Query: 184 MFSATISPAITTLAKNYQKDAVRVN-----IASENRQHSD--IDYRAVLVALSDRDNAIV 236
           +FSAT +  +  L +   ++ VR++     +A+ N Q +   ++   ++    ++ N +V
Sbjct: 200 LFSATQTQEVENLVRAGLRNPVRISVKEKGVAATNTQKTPTRLENYYMICKADEKFNQLV 259

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV--VALSGELSQQERSNALQMMRDGR 294
           + LR H  +  +VF ST A V  + K L   + QV  + + G++ + +R+      R   
Sbjct: 260 HFLRQHKQEKHLVFFSTCACVEYYGKALESLIKQVKIMCIHGKM-KHKRNKIFTEFRRLA 318

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIP 349
             + + TDV ARGID+P++  V+  +  S+    +HR GRT R G  G + VF++P
Sbjct: 319 GGILVCTDVMARGIDIPEVHWVLQYDPPSSASAFVHRCGRTARIGNAGSALVFLLP 374


>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
 gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
 gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
          Length = 782

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|61217546|sp|Q5ZHZ0|DX39B_CHICK RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
           U2AF65-associated protein; AltName: Full=DEAD box
           protein UAP56
 gi|53136648|emb|CAG32653.1| hypothetical protein RCJMB04_32b9 [Gallus gallus]
 gi|255661416|gb|ACU25864.1| HLA-B associated protein 1 [Meleagris gallopavo]
          Length = 428

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 183/345 (53%), Gaps = 15/345 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             ++ L +  TRELA Q+ +E E +      V VAV  GG++V ++   L+ N  HIVVG
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVG 171

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT+
Sbjct: 172 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L        
Sbjct: 232 SKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQV 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  RG
Sbjct: 291 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           +D+  + +  + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 MDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 395


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 179/354 (50%), Gaps = 19/354 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 308 GYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVHYILKNG--VSPAKDRISH 365

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q+  E+  L  +T +   V  GG          +N   I+V  PGR
Sbjct: 366 PIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR---FEN--DILVACPGR 420

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D      ++ S +K ++LDEAD ML++GF + IE+++ S      S ++R+ LMFSAT
Sbjct: 421 LKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYSDMPSSEERQTLMFSAT 480

Query: 189 ISPAITTLAKNYQKDAVRV-NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LAK Y +    +  +        +I  +   V  +++ + + +I+      + 
Sbjct: 481 FPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDL 540

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ S  +    L         + G+  Q +R  AL+  + G   + +ATDVA+R
Sbjct: 541 VLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASR 600

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           G+D+P++  VI  +L    ++  HR GRTGRAG KG++     +N +  A  L+
Sbjct: 601 GLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYDRNNRNLAVELY 654


>gi|253746576|gb|EET01760.1| ATP-dependent RNA helicase HAS1, putative [Giardia intestinalis
           ATCC 50581]
          Length = 545

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 17/378 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EA+   G+ N+T +Q A +   L  +++   A TGSGK++AF L     +   N +    
Sbjct: 42  EAIDAMGHKNMTRIQAASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDLIHKANMKLHHG 101

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + + PTRELA+Q+      L + T + V + IGG S  +E   L  GA IV+ TP
Sbjct: 102 TG--VIVLTPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCKGASIVIATP 159

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRMLMFSATI 189
           GRLCDH+    G     L  ++LDEAD +L+ GF+ ++E IL     PK R++  FSAT+
Sbjct: 160 GRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLRQVCFFSATM 219

Query: 190 SPAITTLA--KNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           S     +   +  ++  VR+N     ++  R H +  Y  ++     R   +   ++   
Sbjct: 220 SDKCLEVPHMEVNKETLVRINTDTKSSTATRAHFEQGY--IICPPEQRFLLLYTFMKRRS 277

Query: 244 AKNAIVFCSTRASVSRFTKVL-AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K  IVF S+R SV  + + L    +  V+ L G + Q++R        + ++ V +AT+
Sbjct: 278 DKKIIVFLSSRDSVEFYYEFLRFIGMASVLMLDGGMKQKQRMETYNKFCNAQSGVLLATN 337

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRT--GRAGRKGMSVFVIPQNMQRRAERLF 360
           VAARG+DLP ++ VI  +   + E+ +HR+GR   G   +KG+ +  +  + + +     
Sbjct: 338 VAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTSKKGVGLLFL-MSHETKFISFL 396

Query: 361 REANVSVVWEPAPSVEAI 378
           +  NVS+     P+ + I
Sbjct: 397 KAHNVSLFEFEFPADKII 414


>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658654|emb|CAZ29706.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 829

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 181/366 (49%), Gaps = 17/366 (4%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY   T +Q   +   L  +DV+  A+TGSGKT AF + L           SPA  P 
Sbjct: 47  KKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGKTAAFLIPLFEKFPCH----SPA-GPR 101

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL ++PTRELA+Q     + L   T +   + +GG  +  +   L     I++ TPGR  
Sbjct: 102 ALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKMEEQFAALHKSPDIIIATPGRFL 161

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             +    L++  ++ VV DE D + +LGF + +   L   P+ R+ L+FSAT+   +   
Sbjct: 162 HVLMEMNLSLKSIEYVVFDEGDRLFELGFAEQLSETLKRLPRSRQTLIFSATLPKNLVEF 221

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGAKNAIVFCSTR 254
           A+    D + + +   ++   D+    +     +++  +V++L    H  + A+VF +T+
Sbjct: 222 ARAGLVDPILLRLDLHSKLSQDLKLAHITCLPEEKNVILVHLLGKVIHKDEQAVVFFATK 281

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V  F  +L +  F    +   L    R+ AL+  R   ARV + TDVAARG+D+P L+
Sbjct: 282 HHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRTARVLLVTDVAARGVDIPHLD 341

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQR---------RAERLFREAN 364
            VI+    + P+  LHR GR  RAGR+G++   V P+ +           +  ++ + +N
Sbjct: 342 NVINFHFPAQPKLFLHRVGRVARAGRRGVAYSLVDPEELPYLLDVFMFLGKEWKVCQSSN 401

Query: 365 VSVVWE 370
             V WE
Sbjct: 402 KQVEWE 407


>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 654

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 200/400 (50%), Gaps = 14/400 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P        L +  ++++T +Q   L   L+ KDVL +AQTGSGKT+AF + + 
Sbjct: 1   KAFSDLPISDATKRGLKKAFFMDMTDIQTKSLPISLKGKDVLGAAQTGSGKTLAFLVPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     ++  A    AL I+PTRELAVQ+   L  +         + IGG ++ ++ R
Sbjct: 61  EILYRR--KWGAADGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNL-KDER 117

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           D  +  +I+V TPGRL  H+ +  G +  +L+ +VLDEAD +LD+GF+  +  +L   PK
Sbjct: 118 DRLSRMNILVATPGRLLQHMDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALLSHLPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNA 234
            R+ L+FSAT + +++ LA+   KD V V I    +S +    +++   V+  L  + + 
Sbjct: 178 SRQTLLFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTMPQNLEQHYVICELDKKLDV 237

Query: 235 IVNILRYHGAKNAIVFCSTRASVSR-FTKVLAEHL-FQVVALSGELSQQERSNALQMMRD 292
           + + ++ H     IVF S+   V   F      H    ++ L G+  Q  R         
Sbjct: 238 LWSFIKTHLQSKIIVFMSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQSARLTMYTKFSS 297

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQN 351
               V  ATD+AARG+D P ++ V+  +   + +  +HR GRT R   KG + +F++P  
Sbjct: 298 ISHAVLFATDIAARGLDFPSVDWVLQMDAPEDADTYIHRVGRTARYESKGKALLFLMPSE 357

Query: 352 MQRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDP 390
            +     L + A +V  +   A   + I  +      QDP
Sbjct: 358 EEGMKVALQKRAIDVKQIKIRASKTQTIENQLQNLAFQDP 397


>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 903

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 184/366 (50%), Gaps = 35/366 (9%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++++G+   T +Q   +   +  KDV+  A+TGSGKT AF + +   L A     S   
Sbjct: 102 AITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIERLRAH----SAKV 157

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL ++P+RELA+Q  + ++     T +   + +GG S+  +   + +   IV+ TPG
Sbjct: 158 GTRALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMASNPDIVIATPG 217

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R        GL++S +K VV DEAD + ++GF   +  IL + P  R+ L+FSAT+  ++
Sbjct: 218 RFLHLKVEMGLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLLFSATLPASL 277

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-----YHGAKNA- 247
              A+   +D   V + +E +   D++     V  ++++ A+++IL       HG  +  
Sbjct: 278 VEFARAGLQDPTLVRLDAETKVSPDLESAFFSVKGAEKEAALLHILSDLIKMPHGTPDGV 337

Query: 248 -------------------------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
                                    I+F +T+  V    ++L +  + V  + G L Q+ 
Sbjct: 338 PLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVEYLAQLLTKAGYAVSYVYGSLDQEA 397

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R    +  R+GRA + + TDVAARGID+P L  VI+ +    P+  +HR GRT RAG++G
Sbjct: 398 RRINTENFRNGRANILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRG 457

Query: 343 MSVFVI 348
            +  ++
Sbjct: 458 WAYSIV 463


>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
          Length = 725

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 204/409 (49%), Gaps = 40/409 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 165 NLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPVLERLL-- 222

Query: 66  NDRFSPASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              + P   P     L + PTREL VQV +  + L   T V V + +GG+ V  +   L+
Sbjct: 223 ---YRPLDGPAISRVLVLVPTRELGVQVYQVTKQLAQFTTVEVGLSVGGLDVKIQEGVLR 279

Query: 123 NGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+R     ++  ++ ++LDEAD MLD  F + +++I+    + R+
Sbjct: 280 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 339

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVAL 228
            ++FSAT++  +  LA       +++ + S               R+  + D  A+L AL
Sbjct: 340 TILFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 399

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             R         +H   +A+VF  T+    R   +L     +V  L G L+Q +R   L+
Sbjct: 400 VCR--------TFHD--HAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLR 449

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +D    + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV + 
Sbjct: 450 KFKDEEIDILLATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLA 509

Query: 349 PQNMQRRAERLFREANVSVVWE--PAPSVEAIR------ERDAQRILQD 389
            +  +   + + ++A   V     P   +E         E D ++ILQ+
Sbjct: 510 GEQERSLVKEVIKQAKNQVKNRIIPPDIIEKYNKKLQSLESDVEKILQE 558


>gi|114627326|ref|XP_001168526.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform 3 [Pan
           troglodytes]
          Length = 851

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 372

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432

Query: 197 AKNYQKDAVRVNIASENRQH-----------------SDIDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++                     ++D  A+  +L      + + L
Sbjct: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDELDSFAIPESLKQHVTVVPSKL 492

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 493 RLVCLAAFILQKCKFEKDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 612

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 613 IHRIGRTARIGCHGSSLLIL 632


>gi|55926219|ref|NP_446015.2| ATP-dependent RNA helicase DDX39A [Rattus norvegicus]
 gi|61212312|sp|Q5U216|DX39A_RAT RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
           box protein 39; AltName: Full=Nuclear RNA helicase, DECD
           variant of DEAD box family
 gi|55562871|gb|AAH86328.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Rattus norvegicus]
 gi|149037897|gb|EDL92257.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Rattus
           norvegicus]
          Length = 427

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|146075141|ref|XP_001462692.1| eukaryotic initiation factor 4a [Leishmania infantum JPCM5]
 gi|146075145|ref|XP_001462693.1| eukaryotic initiation factor 4a [Leishmania infantum JPCM5]
 gi|157878919|ref|XP_001687470.1| eukaryotic initiation factor 4a [Leishmania major strain Friedlin]
 gi|157878921|ref|XP_001687471.1| eukaryotic initiation factor 4a [Leishmania major strain Friedlin]
 gi|74893214|sp|O62591|IF4A_LEIMA RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|150383487|sp|A4HRK0|IF4A_LEIIN RecName: Full=Probable eukaryotic initiation factor 4A;
           Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase
           eIF4A
 gi|134066770|emb|CAM65230.1| putative eukaryotic initiation factor 4a [Leishmania infantum
           JPCM5]
 gi|134066771|emb|CAM65231.1| putative eukaryotic initiation factor 4a [Leishmania infantum
           JPCM5]
 gi|321438130|emb|CBZ11882.1| putative eukaryotic initiation factor 4a [Leishmania major strain
           Friedlin]
 gi|321438131|emb|CBZ11883.1| putative eukaryotic initiation factor 4a [Leishmania major strain
           Friedlin]
 gi|322496094|emb|CBZ31166.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 403

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 28  FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L + +       +GG  V  +
Sbjct: 88  LDFRHNLIQ------GLVLSPTRELALQTAEVISRIGEFL-SNSSKFCETFVGGTRVQDD 140

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G  + VGTPGR+ D I+   L    L+ +VLDEADEML  GF D I  I    P
Sbjct: 141 LRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP 200

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++ +FSAT+   +  L K + +D VR+ +  E+     I    + V    + + +++
Sbjct: 201 KDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V ++  E+ + +R   +   R G +RV
Sbjct: 261 LYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N EN LH
Sbjct: 321 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353


>gi|74205930|dbj|BAE23239.1| unnamed protein product [Mus musculus]
          Length = 427

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQYKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|52077088|dbj|BAD46119.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53791928|dbj|BAD54190.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 562

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/342 (32%), Positives = 182/342 (53%), Gaps = 19/342 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF---GLALASTLLA-ENDRFSPASA 74
           GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF    + + S L   + D+  P  +
Sbjct: 98  GYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKLPPIDCDKKRPPIS 157

Query: 75  PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTP 132
              + + PTRELA Q   E  + L     + V + IGG  +  E++ +  N   I+V TP
Sbjct: 158 --VVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMHTNPCQILVATP 215

Query: 133 GRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GRL DH+    G    +  +K ++LDEAD +LD+GFR DIE I+ + PK+R+ L+FSAT+
Sbjct: 216 GRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATV 275

Query: 190 SPAITTLAK-NYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +  +     ++D   VN   E  +  HS +    V+  L  + + +  +L  H ++N
Sbjct: 276 PDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSILYGLLTDHISEN 335

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
                      S   ++L+E    V  +     Q  R+   +  ++ +  + +++DV+AR
Sbjct: 336 V-----DYKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFKESKGLILVSSDVSAR 390

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++
Sbjct: 391 GVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLL 432


>gi|323305025|gb|EGA58779.1| Dbp3p [Saccharomyces cerevisiae FostersB]
 gi|323337602|gb|EGA78847.1| Dbp3p [Saccharomyces cerevisiae Vin13]
          Length = 349

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 160/275 (58%), Gaps = 9/275 (3%)

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L I+PTRELA Q+   L  L  K G+      GGV    +R  L+  + +VV TPGRL D
Sbjct: 12  LVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLLD 70

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITTL 196
            ++   +++S +  +VLDEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  L
Sbjct: 71  LLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVREL 130

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAIV 249
           A  +  + ++V+I + ++  ++     ++  +  R  +  ++ +L+ YH      +  ++
Sbjct: 131 ASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLI 190

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   +   +R  + L  + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+D
Sbjct: 191 FALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLD 250

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +P+++ VI+       E+ +HR GRTGRAG+ G +
Sbjct: 251 IPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTA 285


>gi|254573064|ref|XP_002493641.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|238033440|emb|CAY71462.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|328354532|emb|CCA40929.1| RNA Helicase [Pichia pastoris CBS 7435]
          Length = 766

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 181/338 (53%), Gaps = 16/338 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           ++ +T +Q+  + P L+ +D+L +A+TGSGKT+AF + L   LL E+  ++      AL 
Sbjct: 62  FIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIPLIEMLLRED--WNEFDGVGALI 119

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I+PTRELA+Q+   L  +   +     + IGG     E   +    ++++GTPGRL  H+
Sbjct: 120 ISPTRELAMQIYEVLLNIGKHSSFSCGLVIGGKDFKYESERI-GKINVLIGTPGRLLQHM 178

Query: 140 -RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
            +   LNI++L+ ++LDEAD +LD+GF+  ++ I+ S P +R+ L+FSAT + ++  LA+
Sbjct: 179 DQSANLNINNLQMLILDEADRILDMGFKKTLDSIISSIPPQRQTLLFSATQTKSVQDLAR 238

Query: 199 ------NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
                  Y   +  +++A+ +     ++   ++V L+++ N + + ++ H     +VF S
Sbjct: 239 LSLTNPKYINSSSDLDLATPD----SLEQSYIVVPLNEKINTLWSFIKTHLKSKILVFLS 294

Query: 253 TRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           +   V    +     +    ++ L G   Q  R          +     ATDV ARG+D 
Sbjct: 295 SSKQVHFLYEAFRKLQPGISLMKLHGRQKQTARIETTVKFSHAQHCCLFATDVVARGLDF 354

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           P ++ V+  +   +    +HR GR  RAG++G S+ ++
Sbjct: 355 PAIDWVVQLDCPEDASTYIHRVGRCARAGKEGKSLLIL 392


>gi|209882552|ref|XP_002142712.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209558318|gb|EEA08363.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 555

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 195/385 (50%), Gaps = 33/385 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----EN 66
           I +AL++  +VN T +Q+ ++   L  +D+L  A+TGSGKT AF L     LL       
Sbjct: 12  ILKALNDLNFVNPTPIQKEVIPLALAGRDILAEAETGSGKTAAFLLPTIERLLKFPGIRA 71

Query: 67  DRFSPA------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRER 118
            + SP       +A   L + P+RELA+Q    LE L  K  +++  CI  GG+S  +  
Sbjct: 72  RKMSPLGPTGGLNATKVLILLPSRELAMQCFDVLESLI-KYCLIITRCIVTGGMSQSQHE 130

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L++   IV+ TPGR+ D  I   G+++  L+ V+LDEAD +LD+GFR +   IL    
Sbjct: 131 VTLRSQPDIVIATPGRILDMLINTMGVHLELLEIVILDEADRLLDMGFRRECLEILRYVS 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---------HSDIDYRAVLVAL 228
           + R+ ++FSAT+S  +T LA    ++  R++     R           SD+    +   L
Sbjct: 191 QCRQTMLFSATLSRGVTDLALLTLRNPCRISTIGLGRNAILSNTEGITSDVSTIGLSTTL 250

Query: 229 S----------DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +          DR+ A+ +IL     +  IVF  T+    R + +     F  V L G L
Sbjct: 251 NQEFVELNEEKDREGALFHILSKIYTERVIVFFQTKKEARRISILCNILGFSAVELHGYL 310

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q++R+  L     G +++ +A+++AARG+D+  +  VI+  L       +HR GRT R 
Sbjct: 311 TQEKRNENLARFTKGESKILLASELAARGLDIKGITAVINFTLPLEASRYIHRVGRTARI 370

Query: 339 GRKGMSVFVIPQNMQRRAERLFREA 363
           G  G S+ +  Q+ + R + L ++ 
Sbjct: 371 GENGNSITLYSQSERSRLKSLMKQV 395


>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142982514|sp|A1CNV8|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
 gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 826

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 178/350 (50%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 312 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 369

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T V     +GG S+  +   L+ 
Sbjct: 370 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKK 426

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 427 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 486

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRY 241
           ++FSAT++ ++  L +      VR+ + S  ++++ ++     V L   R+   +  L Y
Sbjct: 487 MLFSATMTDSVDKLIRVGLNRPVRLMVDS--KKNTSMNLTQEFVRLRPGREGKRLGYLLY 544

Query: 242 HGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             ++      IVF   +    R   V      +   L G +SQ++R  +++  R+G+   
Sbjct: 545 LCSEIFTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAF 604

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 605 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 654


>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta]
          Length = 643

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 213/402 (52%), Gaps = 26/402 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E + ++ +   + +Q       L  +D++  AQTG+GKT+AF   L   L+
Sbjct: 228 FQAYPDILTE-IRKQNFEKPSPIQCQAWPILLSGRDLIGIAQTGTGKTLAF---LLPALI 283

Query: 64  AENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCI-GGVS 113
             + + +P      P  L +APTRELA+Q+ +E+   Y+  G+       + VC+ GG S
Sbjct: 284 HIDGQVTPRDERPGPNVLVMAPTRELALQIEKEVA-KYSYRGIKAYLKNYLRVCVYGGGS 342

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              +   + +G  IV+ TPGRL D ++   L++S +  ++LDEAD MLD+GF   I   L
Sbjct: 343 RKAQVATVSSGVQIVIATPGRLNDLVQANILDVSAVTYLILDEADRMLDMGFEPQIRKTL 402

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDR 231
                 R+ +M SAT    +  LA++Y K+ ++V + S +    HS +  +  +V   ++
Sbjct: 403 LGVRPDRQTVMTSATWPQGVRRLAQSYMKNPLQVFVGSLDLAAVHS-VTQKIYMVDQDEK 461

Query: 232 DNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
              +    +  G  + AIVF   ++ V   +  LA    +  ++ G+  Q +R  AL+ +
Sbjct: 462 TEYMHQFFQEMGPHDKAIVFFGKKSKVDDISSDLALSNIECQSIHGDRDQADREQALEDL 521

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G  ++ +ATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +
Sbjct: 522 KSGTVQILLATDVASRGIDIEDVTHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTR 581

Query: 351 NMQRRAERL---FREANVSV---VWEPAPSVEAIRE-RDAQR 385
                A+ L     EAN  V   V++ A   +A ++ +DA++
Sbjct: 582 QDWHHAKALIDILEEANQEVPEEVYKMAERYDAWKQKKDAEQ 623


>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
          Length = 1657

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 184/357 (51%), Gaps = 32/357 (8%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + + +A+S+  +V+ T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 1109 NLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLL-- 1166

Query: 66   NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               + P   P     L + PTREL VQV +  + L   + + + + +GG+ +  +   L+
Sbjct: 1167 ---YRPVGGPPVTRVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILR 1223

Query: 123  NGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IV+ TPGRL DH++      +  ++ ++LDEAD MLD  F + ++ I+    + R+
Sbjct: 1224 KNPDIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQ 1283

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASEN-------------RQHSDIDYRAVLVAL 228
             ++FSAT++  + +LA       VR+ + S               RQ  + D  A+L AL
Sbjct: 1284 TMLFSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAAL 1343

Query: 229  SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                  +    R H     +VF  T+    R   +L     +V  L G L+Q +R +ALQ
Sbjct: 1344 ------VCRTFREH----CMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQ 1393

Query: 289  MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
              ++ +  V +ATDVAARG+D+  ++ VI+  + +  E+ +HR GRT RAGR G+SV
Sbjct: 1394 KFKETQIDVLVATDVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSV 1450


>gi|321479275|gb|EFX90231.1| hypothetical protein DAPPUDRAFT_190268 [Daphnia pulex]
          Length = 623

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 176/351 (50%), Gaps = 13/351 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ I   L ++G    + +Q   L   L  +D++  A TGSGKT+ F L +    L +  
Sbjct: 190 PKGILVGLQKKGIKQPSPIQIQGLPTVLSGRDMIGIAFTGSGKTLVFVLPIVVFSLEQEL 249

Query: 68  R--FSPASAPLALAIAPTRELAVQVGRELEWL---YAKTG---VVVAVCIGGVSVHRERR 119
           +  F P   P  L + P+RELA Q+   +E      A+ G   +   + IGG  V++   
Sbjct: 250 KMPFLPNEGPFGLIVCPSRELAKQILETVEHFADCLAQQGMPRIKSCLIIGGTPVNQSLE 309

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G HI+V TPGRL D +  K + +   + + +DEAD M+D+GF +DI  I      +
Sbjct: 310 IINRGVHIIVATPGRLMDMLDKKMIKLDVCRYLCMDEADRMIDMGFEEDIRTIFSYFKGQ 369

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I   A++     + +N+        ++      V   +++  IV++L
Sbjct: 370 RQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQE---VEYVNQEAKIVHLL 426

Query: 240 R--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     ++F   +  V    + L     + VA+ G   Q+ERS A+   R G   V
Sbjct: 427 ECIQKTQPPVLIFAEKKQDVDAIHEYLLLKGIEAVAIHGSKDQEERSRAVDAFRQGIKDV 486

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G KG +   I
Sbjct: 487 LVATDVASKGLDFVNIQHVINYDMPDDIENYVHRIGRTGRSGNKGQATTFI 537


>gi|281353060|gb|EFB28644.1| hypothetical protein PANDA_009904 [Ailuropoda melanoleuca]
          Length = 422

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + +   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 394


>gi|226528292|ref|NP_001149406.1| spliceosome RNA helicase BAT1 [Zea mays]
 gi|195627032|gb|ACG35346.1| spliceosome RNA helicase BAT1 [Zea mays]
          Length = 399

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 183/338 (54%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DV+  A++G GKT  F       +L+   +  P +
Sbjct: 61  AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVF-------VLSSLQQIDPVA 113

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
             +A L +  TRELA Q+  E E      T V VAV  GGV + + +  L+N   HIVVG
Sbjct: 114 GQVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVG 173

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 174 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 233

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +  + ++ ++++  + ++L        
Sbjct: 234 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY-IKLSEAEKNRKLNDLLDALDFNQV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   ++Q+ER    +  ++G  ++ +ATD+  RG
Sbjct: 293 VIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKKILVATDLVGRG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 353 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 390


>gi|327265107|ref|XP_003217350.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Anolis
           carolinensis]
          Length = 427

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 181/337 (53%), Gaps = 12/337 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   + + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPTDGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +    + V V+V  GG+S+ ++   L+ N  HIVVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMSAVKVSVFFGGLSIKKDEDVLKKNCPHIVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRNKTLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  ++++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDTEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  + +V + ++  + +  LHR  R GR G KG++V
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 387


>gi|256823808|ref|YP_003147771.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256797347|gb|ACV28003.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 420

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 203/393 (51%), Gaps = 26/393 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA----ENDR 68
           +A+++ G+   T +Q   L   L+ ++V   AQTG+GKT+AF LA+ + +L     E  R
Sbjct: 22  KAVADLGFEYCTPIQAKSLPLLLKGQNVAGQAQTGTGKTIAFLLAIMNDILTLPEIEGRR 81

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P +L +APTRELAVQ+ ++   L   T + + V  GG    ++R+ L +G  I+
Sbjct: 82  ---KNEPRSLIMAPTRELAVQIAKDAVQLAKHTDLKIRVVYGGEDHEKQRQQLIDGVDIL 138

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFS 186
           +GT GRL D+ + K   +  + +VVLDEAD M DLGF  DI ++ +  P    R  ++FS
Sbjct: 139 IGTTGRLIDYFKTKAFGLEAIDSVVLDEADRMFDLGFIKDIRYLFNRMPPATDRLNMLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHG 243
           AT+S  +  LA  +  +   V + ++    + I  R  L   S R+ A   +V +++   
Sbjct: 199 ATLSHRVQELAYEHMNNPQHVQVQTQQVSANKI--REALFYPS-REEALPLLVGLMQRLE 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +IVF +T+ +       LA +  +   L+G++ Q++R   L  +++    V + TDV
Sbjct: 256 PEKSIVFTNTKRAAEHVWACLAGNDIKAGLLTGDVHQKKRLRLLDELKNDDVSVLVCTDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG-----------MSVFVIPQNM 352
           AARG+ +  +  V +  L  + E+ +HR GRT RAG +G           M++  I Q +
Sbjct: 316 AARGLHIDGVTHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFAGEDFAMNLTAIEQYV 375

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
                +L  ++      +P+  ++  R    QR
Sbjct: 376 GHNLPKLEIKSEYLANLKPSLPIQQKRRHPTQR 408


>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 826

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 170/341 (49%), Gaps = 7/341 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 310 NLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYR 369

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +   + +   PTRELAVQ       L   T +     IGG S+  +   L+   
Sbjct: 370 QRKVPTSRVAILM---PTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKKRP 426

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 427 DIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 486

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRY 241
           FSAT++ ++  L +      VR+ + ++ +    +    V +     D    +++++ + 
Sbjct: 487 FSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQ 546

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F   +    R   +      +   L G +SQ++R  +++  RDG+    +AT
Sbjct: 547 VYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLAT 606

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           DVA+RG+D+  +E VI+ E     E  LHR GRT RAGR G
Sbjct: 607 DVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSG 647


>gi|170057076|ref|XP_001864320.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
 gi|167876642|gb|EDS40025.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
          Length = 423

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 180/343 (52%), Gaps = 13/343 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
              P  S P  L +  TRELA Q+ +E E +      + VAV  GG+ + ++   L++  
Sbjct: 104 --EPTESVPYVLVMCHTRELAFQISKEYERFSKYMPSIKVAVFFGGLPIQKDEEVLKSTN 161

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HI+VGTPGR+   IR K LN+ HLK  +LDE D+ML+ L  R D++ I  ++P  ++++
Sbjct: 162 PHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVM 221

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 222 MFSATLSKDIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVL 281

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   + Q+ER +  Q  +D + R+ +AT+
Sbjct: 282 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVATN 341

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 342 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 384


>gi|154298930|ref|XP_001549886.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
 gi|160380630|sp|A6SFV4|DBP8_BOTFB RecName: Full=ATP-dependent RNA helicase dbp8
 gi|150857617|gb|EDN32809.1| hypothetical protein BC1G_11712 [Botryotinia fuckeliana B05.10]
          Length = 545

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 183/349 (52%), Gaps = 33/349 (9%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ +D +  ++TGSGKTVAF + +        D F       AL + PT
Sbjct: 140 TGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKW--AEDPF----GIFALVLTPT 193

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  + + + +   +   +  GG  +  +   L    HIV+ TPGRL DHIR  G
Sbjct: 194 RELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPGRLADHIRTSG 253

Query: 144 LN----ISHLKAVVLDEADEMLDLG----FRDDIEFILD--SSPKKRRMLMFSATISPAI 193
            +    +  ++ VVLDEAD +L  G       D+E  L     P KR+ L+F+AT++P +
Sbjct: 254 EDTIGALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSILPPPAKRQTLLFTATVTPEV 313

Query: 194 TTLAKNYQKDAVR------VNIASENRQ----HSDIDYRAVLVALSDRDNAIVNIL--RY 241
             L     KD  R      V +   + Q       ++   + V ++ R++ +   L    
Sbjct: 314 RAL-----KDMPRTPGKLPVFVCEVDTQALAIPPSLNQMHLQVPVTHREHYLHMFLLTEK 368

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K+ ++FC+  A+    T +L     +V AL  +L Q++R + L   R   AR+ +AT
Sbjct: 369 NLPKSIVIFCNRTATADYLTHLLRLLDHRVTALHSKLPQRQRIDNLGRFRASAARILVAT 428

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           DVAARG+D+P++ LVI+ ++  +P++ +HR GRT RAGRKG +V  + Q
Sbjct: 429 DVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRTARAGRKGEAVSFVGQ 477


>gi|126326670|ref|XP_001371368.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 879

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 8/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +  TL     +++ A  
Sbjct: 83  LQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLETLY--RLQWTSADG 140

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L I+PTRELA Q    L  +         + IGG  +  E   + N  +I++ TPGR
Sbjct: 141 LGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHESERI-NQINILICTPGR 199

Query: 135 LCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L  H+      + ++L+ +VLDEAD +LD+GF D +  I+++ PKKR+ L+FSAT + ++
Sbjct: 200 LLQHMDETTYFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSV 259

Query: 194 TTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA+   KD   V +  + +  +   +D   V+  L  + + + + L+ H  K +IVF 
Sbjct: 260 KDLARLSLKDPAYVWVHEKAKYSTPATLDQNYVICELHQKISVLYSFLKSHLKKKSIVFF 319

Query: 252 STRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           ++   V    +V         ++AL G+  Q  R          ++ V  ATD+AARG+D
Sbjct: 320 ASCKEVQYLFRVFCRLRPGISILALHGKQQQMRRMEVYNEFVRKKSAVLFATDIAARGLD 379

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            P +  V+  +   +    +HR+GRT R    G S+ ++
Sbjct: 380 FPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGESLLIL 418


>gi|308811262|ref|XP_003082939.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
 gi|116054817|emb|CAL56894.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
          Length = 543

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 180/341 (52%), Gaps = 14/341 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F + +   L        P  
Sbjct: 73  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQL-------EPTH 125

Query: 74  APL-ALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQ-NGAHIVVG 130
             + A+ +  TRELA Q+  E E      G V  AV  GG+ ++++R  L+ N  +IVVG
Sbjct: 126 GEVGAVILCNTRELAYQISHEFERFSTFLGDVTTAVVFGGIPINQQREQLKLNPPNIVVG 185

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL        LN+      VLDE D+ML+ L  R D++ I  ++P  ++++MF+AT+
Sbjct: 186 TPGRLKALANDGTLNLKKCAHFVLDECDKMLEELDMRSDVQEIFKATPHDKQVMMFTATL 245

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  +  L K +  D + + +  E +   H  + +  V +  ++++  + ++L        
Sbjct: 246 SKELRALCKKFMNDPMEIFVDDETKLTLHGLVQHY-VKLEEAEKNRKLNDLLDSLMFNQV 304

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S+ +      ++L E  F  + + G++ Q+ER    +  +DG  R+ +ATD+ ARG
Sbjct: 305 VIFVSSVSRCKALDRLLRECNFPSIGIHGDMKQEERLACYKSFKDGDKRILVATDLVARG 364

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ID+  + +VI+ ++ S+ +  LHR GR GR G KG++V  +
Sbjct: 365 IDIERVNIVINYDMPSSADTYLHRVGRAGRFGTKGLAVTFV 405


>gi|330923439|ref|XP_003300242.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
 gi|311325733|gb|EFQ91667.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
          Length = 606

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 194/413 (46%), Gaps = 33/413 (7%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND----------RF 69
           Y   T +Q   +   L   DV+  AQTGSGKT AF + + S L+ +            R+
Sbjct: 139 YTYPTPIQSYCIPAVLTGHDVVAIAQTGSGKTAAFLIPILSKLMGKARQLAAPRPNPVRY 198

Query: 70  SPAS-----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +P +      PL L + PTRELA Q   E   L  +T +   V  GG     +R  L+ G
Sbjct: 199 NPLTDKVRAEPLVLVVCPTRELACQTFDEARRLCYRTMLRPCVIYGGAPTKNQREQLEMG 258

Query: 125 AHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILD----SSPKK 179
             I++ TPGRL D  +   L +   LK  ++DEADE+L  G+ D +E I      ++   
Sbjct: 259 CDILIATPGRLMDFAQNANLLSFRRLKFTIIDEADELLSGGWEDVMEKIFQGGDTNTDAD 318

Query: 180 RRMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
              LMFSAT       LAK Y   D  R+ +      H +I  + + V  S ++ A+ ++
Sbjct: 319 HTYLMFSATFPKEARRLAKEYMADDFTRIKVGRVGSTHENIKQQIIWVEESAKNQALFDL 378

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G +  +VF +++A        L      V ++  + +Q+ER +AL+  R  R  + 
Sbjct: 379 IFSEGPQRTLVFTNSKAKCDMVDDFLYNKALPVTSIHSDRTQREREDALRSFRTARCPIL 438

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPEN----LLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +AT V ARG+D+ +++ VI+ +L S   +     +HR GRT R G +G +        + 
Sbjct: 439 VATGVTARGLDVANIKHVINYDLPSTMHDGITEYIHRIGRTARIGNEGKATSFFNDRNED 498

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
             E L +     ++ E   S +A+ E   Q I +DP  ++   G + +  + L
Sbjct: 499 IGEDLTK-----ILLE---SNQAVPEFLQQHIPEDPTKINWHDGTDDESDNAL 543


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 175/356 (49%), Gaps = 15/356 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L+ +G    T +Q   L   L  +D++  A TGSGKT+ F L +    L E
Sbjct: 205 KLPPAVLRVLAGKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFALPMVLIALQE 264

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHR 116
             R        P+ + I P+RELA Q   E+  +Y K         +   +CIGG+    
Sbjct: 265 EMRMPLGQNEGPIGMVICPSRELATQT-YEIADMYCKALGADRYPEIRAMLCIGGIDAKP 323

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDS 175
               ++ G H VV TPGRL D +  + +N+   + + LDEAD M+D +GF DD+  IL  
Sbjct: 324 MYETIRRGVHAVVATPGRLKDLLHKRRMNLDVCRFLCLDEADRMVDQVGFEDDVRDILSF 383

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRD 232
              +R+ LMFSAT+   I   A++   D + V     A     + D+      V    + 
Sbjct: 384 FRGQRQTLMFSATMPAKIKAFAESALVDPLLVRFHTAAVWCAANMDVIQEVEYVKEEAKL 443

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+   A   ++F   +  V    + L     + VA+ G+ +Q++R  A+   + 
Sbjct: 444 PYLLECLQ-KTAPPVLIFAENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIHQFKA 502

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           G   V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I
Sbjct: 503 GEKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 558


>gi|146091969|ref|XP_001470172.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134084966|emb|CAM69364.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 900

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 17  ERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ERG Y  LT +Q+  L+  L   DVL +A+TGSGKT+ F + +   L  E+  +S     
Sbjct: 85  ERGHYTILTPIQKGTLHLALAGLDVLGAAKTGSGKTLCFVIPVLERLYREH--WSSDMGV 142

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L +   I+VGTPGR+
Sbjct: 143 GALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRL-HAISIIVGTPGRV 201

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             H++    L + +++   +DEAD +LD+GFR+ I  IL   P +R+ L+FSAT +  + 
Sbjct: 202 LHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILAYLPPQRQSLLFSATQTTDVQ 261

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            LA+   K+   V+  +     + +      V+V L  + +A++  L+ H     +VF S
Sbjct: 262 MLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHKKLDALLMFLKRHPNDKIVVFVS 321

Query: 253 TRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T   V      F+K+L +     + L+ ++ Q  R          ++ V   TDVA+RG+
Sbjct: 322 TCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGL 381

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           D P +  V+  +   + +  +HR+GRT RAG +G+S +F+ P+
Sbjct: 382 DFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPR 424


>gi|225713468|gb|ACO12580.1| ATP-dependent RNA helicase DBP4 [Lepeophtheirus salmonis]
          Length = 491

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/359 (30%), Positives = 184/359 (51%), Gaps = 27/359 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           I + + E L +  + N T +Q+  +   L   DV+  A+TGSGKT+ F + + S +L   
Sbjct: 61  IHKTLKENLKKNNFENPTEIQKKTIPAILESHDVISIAKTGSGKTICFVVPIISRILENF 120

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E+D+ S      AL I PTRELAVQ    ++ L   T +     IGG+   +E   ++ 
Sbjct: 121 NEDDKLS------ALIITPTRELAVQTYELIKKLTVNTKIKSFNVIGGIKFKKETYHVE- 173

Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            AHI++ TPGRL  H      L    L  +VLDE D+M++LGF++ I+ I++  P  +R+
Sbjct: 174 AAHILICTPGRLLQHFSELPNLRTELLDVLVLDEFDKMIELGFKEAIKDIIEYLPDTQRV 233

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           L+ SAT          N+ ++ V++    I S+  ++   ++  +L + +++ N + ++L
Sbjct: 234 LL-SATFKHC------NFSQEIVKLTDPKIFSDFSKNDVTNFYKILKS-TEKINYLYSLL 285

Query: 240 RY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQ-VVALSGELSQQERSNALQMMRDGRA 295
            +      +  IVF ST    ++F  +L    F+    LS  + QQ R       RD  +
Sbjct: 286 SHISKSDNRKVIVFFST-CKGAKFHYLLFSKFFKDTFMLSSSVKQQSRLKNYSQFRDMMS 344

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +   TD+AARG+D P++  VI  +    PE  +HR GRT R G+ G S   + +  +R
Sbjct: 345 GILFCTDLAARGLDFPNVSTVIQFDCPDTPETYIHRIGRTARIGKSGSSFIFLLEKEER 403


>gi|85104281|ref|XP_961716.1| hypothetical protein NCU01104 [Neurospora crassa OR74A]
 gi|28923264|gb|EAA32480.1| predicted protein [Neurospora crassa OR74A]
          Length = 678

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 181/360 (50%), Gaps = 27/360 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY N+T VQE +LN     +D LV A+TG+GKT+AF L    TLL   D   P+
Sbjct: 95  KALDAMGYANMTPVQEKVLNMGSFTQDCLVQAKTGTGKTIAFLLPALHTLLNAKD-LDPS 153

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGG-VSVHRERRDLQNGAHIVV 129
              L L +APTRELA Q+  E E L ++        + +GG        + L+    I+V
Sbjct: 154 QVAL-LILAPTRELAQQIVDECEKLVSQCNPRFECHLAVGGSAKASSLSKFLRGKPTILV 212

Query: 130 GTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM----L 183
            TPGRL D++  + +    ++L+ +VLDEAD MLD GF   +  IL S PKK++     +
Sbjct: 213 ATPGRLDDYLSDERVRQKFNNLRCLVLDEADCMLDQGFLPALTKILTSLPKKQQAGWQGM 272

Query: 184 MFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NIL 239
            FSAT+ P+I   L          ++   EN   +        + +   D+ +    N+L
Sbjct: 273 CFSATLPPSIHKVLHHVLAPKHAHISTVDENEAPTINSVPQSYMKVDSVDDVLPTLHNLL 332

Query: 240 ---RYHGAK-NAIVFCSTRASVSRFTKVLAEHL-------FQVVALSGELSQQERSNALQ 288
              RY   K  A+VFCST A  +     L  H          V  +   ++Q +R+   +
Sbjct: 333 SAERYDNPKLKAVVFCST-ARQAALLYTLFGHTGGASPAKLPVWQMQSRMNQAQRTRTTE 391

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++  + +  A+DV  RG+D PD+ LVI   +  N E  +HR GRTGRAG+ G +V +I
Sbjct: 392 EFKNTDSGILFASDVVGRGLDFPDIHLVIQVGIPLNSEQYVHRVGRTGRAGKGGRAVMII 451


>gi|302692416|ref|XP_003035887.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
 gi|300109583|gb|EFJ00985.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
          Length = 620

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 184/361 (50%), Gaps = 16/361 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  IP+ I + L  +  ++ T +Q   +      +D++  A TGSGKT+AF L L   
Sbjct: 185 FEDMKIPRGILDYLKSKRIIDPTPIQIQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIMF 244

Query: 62  LLAENDR--FSPASAPLALAIAPTRELAVQVGRE-LEWL--YAKTG----VVVAVCIGGV 112
            L E  +  F     P+ + + P+RELA Q     L W    AK G    +   +CIGG+
Sbjct: 245 ALEEEMKLPFVRGEGPVGVILCPSRELANQTYENVLAWCEALAKEGRYPQLNTLLCIGGI 304

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S++ +   +  G HIV+ TPGRL D +  K L  ++ K + +DEAD M+DLGF +D+  I
Sbjct: 305 SMNDQAHVMSKGIHIVIATPGRLIDMLEKKRLTFNNCKYMCMDEADRMVDLGFEEDVRNI 364

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +    ++R+ L+FSAT+   I   A+      + +N+      + D+     +V    ++
Sbjct: 365 MSYFKRQRQTLLFSATMPQKIRDFAQQSLIQPILINVGRAGAANLDV---LQVVEYVKQE 421

Query: 233 NAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +V +L          I+F   +  V    + L     + VA+ G  SQ+ER  A++  
Sbjct: 422 AKMVYLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKSF 481

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   V +A+ VA++G+D  +++ VI   +    E+ +H+ GRTGR+G+ G++   +  
Sbjct: 482 KSGAKDVMVASGVASKGLDFNEIQHVIIFTMPKEIEDYVHQIGRTGRSGKTGIATTFVNM 541

Query: 351 N 351
           N
Sbjct: 542 N 542


>gi|68360354|ref|XP_683832.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform 1
           [Danio rerio]
 gi|122890977|emb|CAM14054.1| novel protein (LOC558111) [Danio rerio]
          Length = 739

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/371 (30%), Positives = 185/371 (49%), Gaps = 43/371 (11%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   +  KD +V +QTGSGKT+A+G+ +   L A   +   +  PLA+ I 
Sbjct: 177 SMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIV 236

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q  +  + L    T +V  V +GG     E+  L+ G ++++ TPGRL DHI+
Sbjct: 237 PTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIK 296

Query: 141 GK-GLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRMLMFSATISPAITTL 196
               +  S ++ ++LDEAD +LDLGF  D+  I   L+++   R+ ++ SATI+  ++ L
Sbjct: 297 NTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNAAGPDRQNVLLSATITEGLSRL 356

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---------------------- 234
           A    KD V V+++  + +  +   +A   ALSD                          
Sbjct: 357 ASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAA 416

Query: 235 -IVNILRYHGAKNAIVFCSTRASV----SRFTKVLAE----------HLFQVVALSGELS 279
            I+   ++   +  I+F S+  +V    + FT VL E                 L G + 
Sbjct: 417 FILAKCKFEQRQKLIIFISSCEAVEFLLNLFTAVLCEIPSNTSSKSTSCLNFYRLHGNMR 476

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER+   Q     +  + + TDVAARG+DLP +  ++      +    +HR GRT R G
Sbjct: 477 QEERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIG 536

Query: 340 RKGMS-VFVIP 349
            +G S +F+ P
Sbjct: 537 AQGSSLLFLTP 547


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 179/354 (50%), Gaps = 19/354 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 311 GYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPVVHYILKNG--VSPAKDRISH 368

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q+  E+  L  +T +   V  GG          +N   I+V  PGR
Sbjct: 369 PIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR---FEND--ILVACPGR 423

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D      ++ S +K ++LDEAD ML++GF + IE+++ S      S ++R+ LMFSAT
Sbjct: 424 LKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASRYSDMPSSEERQTLMFSAT 483

Query: 189 ISPAITTLAKNYQKDAVRV-NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LAK Y +    +  +        +I  +   V  +++ + + +I+      + 
Sbjct: 484 FPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEAEKKDKLFDIIYKQKQTDL 543

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ S  +    L         + G+  Q +R  AL+  + G   + +ATDVA+R
Sbjct: 544 VLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALKDFKSGITPILVATDVASR 603

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           G+D+P++  VI  +L    ++  HR GRTGRAG KG++     +N +  A  L+
Sbjct: 604 GLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFYDRNNRNLAVELY 657


>gi|328871810|gb|EGG20180.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 1288

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 192/378 (50%), Gaps = 19/378 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+  +T VQ A +   L  KDVLV A TGSGKT++F + +   LL +          LA+
Sbjct: 588 GFDTMTPVQSATIPLFLSNKDVLVEACTGSGKTLSFIIPIIEILLKKQPEELTKHQVLAV 647

Query: 79  AIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
            + PTRELAVQ+   LE +++    +   + IGG  V+ + +   ++G +++V TPGRL 
Sbjct: 648 IVTPTRELAVQIFGILEQFVHGLDHIKRLLLIGGTEVYEDVQKFNKDGGNVIVATPGRLE 707

Query: 137 DHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           D +    + + +   + ++LDEAD +LD+GF   +  +LD  PK+RR  +FSAT +  + 
Sbjct: 708 DVLSRVERNMKLKEFEMLILDEADRLLDMGFDTALNAVLDRLPKQRRTGLFSATQTTELK 767

Query: 195 TLAKNYQKDAVRVNIASENRQH-------SDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
            LA+   ++ V+V++A + +         S ++ R  ++  S++   + + + +      
Sbjct: 768 ELARMGMRNPVKVSVAVQQKGTNQVSAIPSTLENRYTMLEPSEKFGVLADFMDKNMNNSK 827

Query: 247 AIVFCSTRASVSRFTKVLA------EHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            IV+  T A V  F+ ++       + +  + +L G++  + R           + V   
Sbjct: 828 IIVYFLTCADVDYFSSLMTKMSQFKDRVKDIFSLHGKVPHERRKFVFDKFSAKDSGVIFV 887

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ +RGID P ++ VI  +   +P+  +HR GRT R GR G ++  + +      E   
Sbjct: 888 TDLVSRGIDFPSVDWVIQYDAPQDPKTFIHRIGRTARMGRTGNAMLYLSKAEDDYLE-FM 946

Query: 361 REANVSVVWEPAPSVEAI 378
           R   VS+V  P P   A+
Sbjct: 947 RLRKVSMVETPKPDTLAL 964


>gi|260791488|ref|XP_002590761.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
 gi|229275957|gb|EEN46772.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
          Length = 372

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 185/348 (53%), Gaps = 6/348 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E + +   + +++  +  +T +Q   + P L  +D+L +A+TGSGKT+AF   + +  L 
Sbjct: 15  ETVCEPTLKGVADMSFTCMTEIQAKSIPPLLEGRDILAAAKTGSGKTLAF--LIPAVELM 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + ++PTRELA+Q    L+ L         + +GG S   E   L  G
Sbjct: 73  YKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELLKYHCHTYGLIMGGTSRSSEADKLAKG 132

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ +
Sbjct: 133 INIVVATPGRLLDHMQNTPQFMFKNLQCLVIDEADRILEVGFEEELKQIVRLLPKRRQTM 192

Query: 184 MFSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILR 240
           +FSAT +  I  LA+ + +++ + V +     Q +   ++   V+     R   +   L+
Sbjct: 193 LFSATQTRKIEDLARVSLKREPLYVGVDDNKDQATVEGLEQGYVVCPSEKRFLLLFTFLK 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       +      + 
Sbjct: 253 KNRKKKIMVFFSSCMSVKYHYELLNYIDLPVMAIHGRQKQTKRTTTFFQFCNSDTGTLLC 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT RAG +G ++ ++
Sbjct: 313 TDVAARGLDIPAVDWIVQFDPPDDPKEYIHRVGRTARAGGRGHALLIL 360


>gi|328855350|gb|EGG04477.1| hypothetical protein MELLADRAFT_37461 [Melampsora larici-populina
           98AG31]
          Length = 521

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 188/379 (49%), Gaps = 24/379 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +  ++ +Q A L+  L  +DVL  A+TG+GKT+AF L  A   L       P      L 
Sbjct: 32  FETMSEIQAATLDAVLGGQDVLAQAKTGTGKTLAF-LVPAVEKLRNLTPMPPNRQISILI 90

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGTPGRLCDH 138
           I+PTRELA Q+ RE + L   T   V   +GG +++ E   L+N    ++V TPGRL DH
Sbjct: 91  ISPTRELAAQIARECQPLLEGTSFGVQCVVGGTNINTEINKLKNNRCDVLVATPGRLKDH 150

Query: 139 IRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM----LMFSATISPA 192
           +  +GL   +  L+  +LDEAD +LD+GF+ DI+ IL + P +R +    ++FSATI PA
Sbjct: 151 LLNQGLQGQLRQLRFFILDEADRLLDMGFKPDIDQILQTLPDRRSVPRQSMLFSATI-PA 209

Query: 193 ITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHGA 244
                KN        +I    A +   H  +    V+  L D   A++ I++     HG 
Sbjct: 210 EVMKVKNAVLLPNHAHISTLKAEDINAHLHVQQDFVIAHLHDHFAALLEIIKQDLITHGP 269

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           K+  +VF  T  +     +VL   L     V  L   ++Q  R+   +   D  + V + 
Sbjct: 270 KSKTMVFFPTARATGLGGEVLKYCLKDRVPVFELHSRIAQGARTKTAKKFSDCESGVLVT 329

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DV+ RG+D P++  V+   L   PE+ +HR GRT R G  G  + ++    Q+    L 
Sbjct: 330 SDVSGRGVDYPNVTTVVQVGLPMTPEDYVHRLGRTARGGATGRGIIILAPFEQK---FLT 386

Query: 361 REANVSVVWEPAPSVEAIR 379
           +    S+  +P P ++  R
Sbjct: 387 QGQMSSMPLKPHPPIDLDR 405


>gi|256847961|ref|ZP_05553405.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715021|gb|EEU29998.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
          Length = 462

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 170/329 (51%), Gaps = 9/329 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +V  T VQE ++   L+ ++V+  +QTGSGKT AF L + S +     R        A+ 
Sbjct: 25  FVQPTPVQERVIPEVLKGENVVGQSQTGSGKTHAFLLPIFSMMDVNEQRVQ------AVV 78

Query: 80  IAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
            AP+RELA Q     + L  +A   + +   +GG     +   L+     +V+GTPGR+ 
Sbjct: 79  TAPSRELATQTYNAAKQLNKFAPEPLTIHNYVGGTDKEHQIEQLKRKQPQLVIGTPGRIL 138

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I    L+I      V+DEAD  LD+GF + ++ I    P+K +M++FSATI   +   
Sbjct: 139 DLINSGALDIHLATQFVIDEADMTLDMGFLEQVDQIAGHFPEKLQMMVFSATIPVGLRPF 198

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            K Y ++ V   I +E   + +++   +     D+++ I  +L       A+VF +TR  
Sbjct: 199 LKKYLENPVVEEIPTETVINPNVENWLMSTKGRDKNSLIYELLTMGEPFLALVFANTRER 258

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
            +     L E   +V  + G L  +ER   ++ +R+   +  +ATD+AARGID+  + LV
Sbjct: 259 ATEIYHYLTEQGLKVALIHGGLEPRERKKMMRQVRNLDFQYVVATDLAARGIDIEGVSLV 318

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           I+ ++ S+ E  +HR GRTGR    G ++
Sbjct: 319 INDDIPSDLEYFIHRVGRTGRGNLHGTAI 347


>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 636

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 183/341 (53%), Gaps = 7/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+  +T +Q   + P L  +D++ SA+TGSGKT+AF + +    L    +F P 
Sbjct: 156 KAIVDMGFTTMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPVVE--LIYKLKFLPR 213

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   A+ I+PTREL++Q    L+ L         + IGG +   E   L  G +I+V TP
Sbjct: 214 NGVGAIIISPTRELSMQTFGVLKELMKYHYHTYGLVIGGANRKAEAEKLSKGINILVATP 273

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++   G    +L+ +V+DEAD +LD+GF ++++ I++  PK+R+ ++FSAT + 
Sbjct: 274 GRLLDHLQNTPGFLFKNLQCLVIDEADRILDIGFEEELKQIINLLPKRRQTMLFSATTTA 333

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               L K   +K+ V V I     + +   ++   V+     R   +   L+ +  K  +
Sbjct: 334 KTENLTKLALKKEPVYVGIDDRKEKATVEGLEQGYVVCPSEKRFLLLFTFLKKNKKKKVM 393

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V+ + G+  Q +R+       +  + + + TDVAARG+
Sbjct: 394 VFFSSCLSVKFHHELLNYIDLPVMCIHGKQKQAKRTTVFFQFCNAESGILLCTDVAARGL 453

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
           D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++
Sbjct: 454 DIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLIL 494


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 189/368 (51%), Gaps = 33/368 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++I   ++I   +    Y   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 293 INTFDDIELTEIIENNIKLANYDVPTPVQKYAIPIVMSGRDVMACAQTGSGKTAAFLVPI 352

Query: 59  ASTLLAENDRFSPAS--------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +        P +         PL L +APT+          ++ Y ++ +   V  G
Sbjct: 353 LNQMYKHGVTPPPQNRPFNRRKQYPLGLVLAPTQSK--------KFCY-RSRMRPCVLYG 403

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G +   + R+L  G H+VV TPGRL D I RGK + + +++ +VLDEAD MLD+GF   I
Sbjct: 404 GNNTQEQMRELDRGCHLVVATPGRLEDMIMRGK-VGLDNIRFLVLDEADRMLDMGFEPQI 462

Query: 170 EFILDSS--PK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++ S  P+  +R+ LMFSAT   AI  LA ++  + + + +        +I      
Sbjct: 463 RRIVEESKMPQTGERQTLMFSATFPKAIQELASDFLHNYIFLAVGRVGSTSVNITQSIFW 522

Query: 226 VALSDRDNAIVNILRYHGAKN--------AIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           V  +D+ + ++++L     +N         ++F  T+ S       L  +   V ++ G+
Sbjct: 523 VEENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGD 582

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q+ER  AL+  R GR  V +AT VAARG+D+P+++ VI+ +L +  E  +HR GRTGR
Sbjct: 583 RTQKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEVEEYVHRIGRTGR 642

Query: 338 AGRKGMSV 345
            G  G + 
Sbjct: 643 MGNLGTAT 650


>gi|119608412|gb|EAW88006.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31, isoform CRA_a [Homo
           sapiens]
          Length = 755

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 157 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 216

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 217 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 276

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 277 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 336

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 337 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 396

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 397 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 456

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 457 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 516

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 517 IHRIGRTARIGCHGSSLLIL 536


>gi|325119657|emb|CBZ55210.1| ATP-dependent RNA helicase DDX55,related [Neospora caninum
           Liverpool]
          Length = 569

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/349 (32%), Positives = 183/349 (52%), Gaps = 12/349 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + + +AL+E     LT +Q   +   L  +DVL +A+TGSGKT+AF L  A  LL +
Sbjct: 91  DICEPVKKALAEMKMERLTEIQAKAIPRLLEGRDVLGAAKTGSGKTLAF-LVPAVELLYQ 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +F P +    + I+PTREL++Q   V  EL     +T   + + IGG +   E   LQ
Sbjct: 150 V-KFLPRNGTGVIVISPTRELSLQIFDVAAELSKFLPQT---LGLVIGGANRKHEVEKLQ 205

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G +I+V TPGRL DH++  KG   S+L ++V+DEAD +L +GF +++  IL   P+ R+
Sbjct: 206 KGVNILVATPGRLLDHLQNTKGFQYSNLLSLVIDEADRILQIGFEEEMNAILQMLPQTRQ 265

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT S  +  LA+   K  V V +         I    V+    +R   +   L+ 
Sbjct: 266 TCLFSATQSAKVADLARLSLKKPVFVEVKDTVATVRGIQQGYVVCPAEERFLLLFTFLKK 325

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +  K  +VF S+  SV RF   L  ++      + G+  Q  R +      +    + + 
Sbjct: 326 NREKKIMVFFSSCMSV-RFHDELFNYIDLPTTCIHGKKKQNARMSTYYDFCNAEKGILLC 384

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT R AG  G ++  +
Sbjct: 385 TDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFL 433


>gi|298709151|emb|CBJ31095.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 659

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/343 (33%), Positives = 179/343 (52%), Gaps = 15/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY N+T VQE  +   L   DVL  A+TG+GKTVAF   + +   A    F    +  AL
Sbjct: 127 GYANMTKVQEQSIPVCLTGVDVLAKAKTGTGKTVAF--LIPAIERAAKRGFGKGVS--AL 182

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCD 137
            I+PTRELA Q+  E + + +   + +   +GGV+V+R+   L +GA  I+V TPGRL D
Sbjct: 183 IISPTRELAQQIAVEAQQIMSFHRLKLMCSVGGVNVNRDLNQLNSGAPDIMVATPGRLLD 242

Query: 138 HIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPA 192
            +   GL  ++  L  +V DEAD++L++GFR  IE IL    +S   R+ LMFSAT+   
Sbjct: 243 LMENHGLGRDMRDLDTLVFDEADQLLEMGFRPAIENILRNLQASKTYRQTLMFSATMPGD 302

Query: 193 ITTLAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDR-DNAIVNILRYHGAKN--A 247
           +  +A    K +  V   +  E   H  +  +  +V ++++    +  IL+     +   
Sbjct: 303 VQAIASIAMKPSYEVVDCVGEEENTHQHVPQKFAVVPMAEQIPRLLATILKAKEDPDHKI 362

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF      V    ++  +    V+      SQ  R+   +  R+G+ ++   +DV+ARG
Sbjct: 363 IVFFVAARIVQLHAELFTQMGVDVLETHSRKSQAARTRVAEAFRNGKGQIMFTSDVSARG 422

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D PD+ LVI   L S+    +HR GRT RAG+ G  + V+ +
Sbjct: 423 MDYPDVSLVIQVGLPSDTNQYVHRLGRTARAGKGGSGLLVLAE 465


>gi|154340431|ref|XP_001566172.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063491|emb|CAM39671.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 897

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 17  ERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ERG Y  LT +Q+  L+  L   DVL +A+TGSGKT+ F + +   L  E+  +S     
Sbjct: 85  ERGHYTALTPIQKGALHLALAGFDVLGAAKTGSGKTLCFVIPVLERLYREH--WSSDMGV 142

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L +   I+VGTPGR+
Sbjct: 143 GALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVREERKRL-HAISIIVGTPGRV 201

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             H++    L + +++   +DEAD +LD+GFR+ I  IL   P +R+ L+FSAT +  + 
Sbjct: 202 LHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILKYLPPQRQSLLFSATQTTDVQ 261

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            LA+   K+   V+  +     + +      V+V L  + +A++  L+ H     +VF S
Sbjct: 262 MLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHRKLDALLMFLKRHPNDKIVVFVS 321

Query: 253 TRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T   V      F+K+L +     + L+ ++ Q  R          ++ V   TDVA+RG+
Sbjct: 322 TCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGL 381

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           D P +  V+  +   + +  +HR+GRT RAG +G+S +F+ P+
Sbjct: 382 DFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPR 424


>gi|322500470|emb|CBZ35547.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 897

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 17  ERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ERG Y  LT +Q+  L+  L   DVL +A+TGSGKT+ F + +   L  E+  +S     
Sbjct: 85  ERGHYTILTPIQKGTLHLALAGLDVLGAAKTGSGKTLCFVIPVLERLYREH--WSSDMGV 142

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L +   I+VGTPGR+
Sbjct: 143 GALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVQEERKRL-HAISIIVGTPGRV 201

Query: 136 CDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             H++    L + +++   +DEAD +LD+GFR+ I  IL   P +R+ L+FSAT +  + 
Sbjct: 202 LHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILAYLPPQRQSLLFSATQTTDVQ 261

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            LA+   K+   V+  +     + +      V+V L  + +A++  L+ H     +VF S
Sbjct: 262 MLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHKKLDALLMFLKRHPNDKIVVFVS 321

Query: 253 TRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           T   V      F+K+L +     + L+ ++ Q  R          ++ V   TDVA+RG+
Sbjct: 322 TCNQVKFMHRAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKSAVLFCTDVASRGL 381

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
           D P +  V+  +   + +  +HR+GRT RAG +G+S +F+ P+
Sbjct: 382 DFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPR 424


>gi|110736442|dbj|BAF00189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 520

 Score =  161 bits (407), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 192/360 (53%), Gaps = 21/360 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EAL++  +   T VQ A +      KDV V A TGSGKT+AF + L   +L  +  F 
Sbjct: 27  IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVE-ILRRSTSFP 85

Query: 71  PASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQN-GAHI 127
           P     + + I+PTREL+ Q+    +   +    V +V  +GG  V  + + ++  G ++
Sbjct: 86  PKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNV 145

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGRL D + R + L+  +L+ ++LDEAD +L++ F+  + +I+   PK+RR  +FS
Sbjct: 146 LIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMRFQRQVNYIISRLPKQRRTGLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSD-----------IDYRAVLVALSDRDNAI 235
           AT +  +  LAK   ++ VRV + ++++  S            +    +      + + +
Sbjct: 206 ATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQL 265

Query: 236 VNILRYHGAKNAIVFCSTRASVSRF----TKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V++L  +  K  IVF  T ASV  +    +K+ A     ++ + G++ Q  R  AL    
Sbjct: 266 VDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKALASFT 325

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
              +   + TDVAARG+D+P ++ V+  +   +P    HR+GRT R GR+G + VF++P+
Sbjct: 326 KASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLPK 385


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 175/350 (50%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 484 GYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVHG--VSPARQRKSY 541

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+AL +APTRELAVQ+  E+  L   T +   V  GG      R   +    I+V  PGR
Sbjct: 542 PIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGT-----RYPQRFEQDILVACPGR 596

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D    + L+ S +K ++LDEAD ML++GF + IE ++ S      +  +R+  MFSAT
Sbjct: 597 LRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVDERQTFMFSAT 656

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
               I  LAK Y ++    + +        +I      V  +++ + ++ I+  H   + 
Sbjct: 657 FPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM 716

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           + +F  T+       + L         + G+  QQ+R  AL+  +     + +ATDVA+R
Sbjct: 717 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 776

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+PD+  V+  +L    ++  HR GRTGRAG KG++     +N +R A
Sbjct: 777 GLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLA 826


>gi|148231835|ref|NP_001079623.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus laevis]
 gi|28278799|gb|AAH45239.1| MGC53693 protein [Xenopus laevis]
 gi|31580806|gb|AAP51031.1| DECD-box RNA helicase [Xenopus laevis]
 gi|76779487|gb|AAI06295.1| MGC53693 protein [Xenopus laevis]
          Length = 427

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 177/333 (53%), Gaps = 14/333 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + + VQ   +   +   D+L  A++G GKT  F LA    + A   + S       L
Sbjct: 63  GFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEAVEGQVS------VL 116

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRL 135
            +  TRELA Q+ +E E    Y  T V VAV  GG+S+ ++   ++    HIVVGTPGR+
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLSIKKDEDTIRKSCPHIVVGTPGRI 175

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
              +R K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S  I 
Sbjct: 176 LALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIR 235

Query: 195 TLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            + + + +D + V +  E +   H    Y  V +  S+++  + ++L        ++F  
Sbjct: 236 PVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVVIFVK 294

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +        ++L E  F  +A+   +SQ+ER +  Q  +D + R+ +AT++  RG+D+  
Sbjct: 295 SVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 354

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 355 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387


>gi|169351091|ref|ZP_02868029.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
 gi|169292153|gb|EDS74286.1| hypothetical protein CLOSPI_01870 [Clostridium spiroforme DSM 1552]
          Length = 456

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 175/348 (50%), Gaps = 12/348 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N  +   + ++E G+   TS+QE ++    +  D++  +QTG+GKT AF L +
Sbjct: 1   MNTFEKYNFQKFCYQTINELGFSKPTSIQEKVIPLVYKNNDIIGISQTGTGKTHAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHR 116
              +    D         A+  APTRELA Q+    + L+ K    + V++ IGG    +
Sbjct: 61  MDQIDTNQD------CVQAVITAPTRELATQIYNNAK-LFVKYNEKIRVSLLIGGSDRQK 113

Query: 117 ERRDLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               L    HIV+GTPGR+ D  +  + L I+     ++DEAD  L+ G+ +DI+ +   
Sbjct: 114 SVNKLTVQPHIVIGTPGRIKDLALDEQALKITTASTFIIDEADMTLEFGYLEDIDAVAGK 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             +  +M++FSATI   +    K Y +  V V I  +     ++++  +     DR + +
Sbjct: 174 MKEDLKMMVFSATIPQMLRPFLKKYMQTPVIVEIDDDKVTTDNVEHVLIATKHQDRYDVL 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+        I+F + R  V++ TK L E  F+V  + G L  +ER   ++ + +   
Sbjct: 234 KKIMNIIDPYICIIFANKRDEVAKITKQLREDGFKVGEVHGNLEPRERKQMMRRIHNNEY 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           +  +ATD+AARGID+  +  VI+ E     +  +HRSGR+GR    G+
Sbjct: 294 QYIVATDIAARGIDIDGVSHVINLEFPKESDFYIHRSGRSGRGKYTGV 341


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/333 (32%), Positives = 184/333 (55%), Gaps = 19/333 (5%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ A++   L  K+V+V A TGSGKT A+ L L + +    D  +P +   A+  AP+
Sbjct: 33  TKVQAAVIPALLNNKNVVVQAATGSGKTHAYLLPLLNMI----DENAPVTQ--AVVTAPS 86

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRERRDLQNGA-HIVVGTPGRLCDHIR 140
           RELA Q+ +    L   +G+ +++    GG   +R+    +N A  +++ TPGRL D   
Sbjct: 87  RELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQIEKAENRAPQLIIATPGRLHDFAS 146

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            K +N+ ++KA ++DEAD  LD+GF   ++ I+    KK  +  FSATI   +    + Y
Sbjct: 147 KKVINLDNVKAFIIDEADMTLDMGFLGQMDEIISKLDKKVVLGAFSATIPVKLENFLRKY 206

Query: 201 --QKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             + D + ++   I +   Q+  ID     V   D+   +  +L       A+VF +T+ 
Sbjct: 207 MSKPDFIVIDNPAIIAPTIQNDLID-----VGSRDKKEILYKLLTMGQPYLALVFANTKK 261

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V   T  L E   +V  + G ++++ER   ++ +R+G+ +  +A+D+AARGID+P + L
Sbjct: 262 TVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVASDLAARGIDVPGVSL 321

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V++ E+  + E ++HR GRTGR G KG ++ +I
Sbjct: 322 VVNYEIPKDLEFVIHRIGRTGRNGLKGHAITLI 354


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 179/346 (51%), Gaps = 6/346 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  +I   +++ GY   T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 161 IKKFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLLPI 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG SV  + 
Sbjct: 221 LNLLLNDAVDLE-IGKPQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQN 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP- 177
             +  G H+++ TPGRL D +    +     + +V+DEAD MLD+GF + +  I+     
Sbjct: 280 ESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTM 339

Query: 178 -KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + LMFSAT    I  +A  +  + + V I       SD+      V   ++   ++
Sbjct: 340 RAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIHEVTKYNKRRKLI 399

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+   A   IVF  T+         L+E      ++ G+  Q +R  AL+  + G+ +
Sbjct: 400 DILK-ESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           V IAT VA+RG+D+ +++ V++ ++    ++ +HR GRTGR G  G
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNG 504


>gi|147905268|ref|NP_001080733.1| nuclear RNA helicase [Xenopus laevis]
 gi|28280049|gb|AAH45125.1| Ddx39-prov protein [Xenopus laevis]
          Length = 427

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 177/333 (53%), Gaps = 14/333 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + + VQ   +   +   D+L  A++G GKT  F LA    + A   + S       L
Sbjct: 63  GFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEAVEGQVS------VL 116

Query: 79  AIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRL 135
            +  TRELA Q+ +E E    Y  T V VAV  GG+S+ ++   ++    HIVVGTPGR+
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPT-VEVAVFFGGLSIKKDEDTIRKSCPHIVVGTPGRI 175

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
              +R K LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S  I 
Sbjct: 176 LALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIR 235

Query: 195 TLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            + + + +D + V +  E +   H    Y  V +  S+++  + ++L        ++F  
Sbjct: 236 PVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVVIFVK 294

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +        ++L E  F  +A+   +SQ+ER +  Q  +D + R+ +AT++  RG+D+  
Sbjct: 295 SVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 354

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 355 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387


>gi|172056876|ref|YP_001813336.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989397|gb|ACB60319.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 178/343 (51%), Gaps = 9/343 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P V+ EAL +      T +Q  I+   L+ +D++  +QTG+GKT++F L +   + 
Sbjct: 7   FDLHPFVV-EALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPIVQNVN 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDL 121
            E           A+ +APTRELA Q+  EL+ +  K    +  ++  GG+   R+   +
Sbjct: 66  PELQEMQ------AIIVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRERQIGRV 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    IV+GTPGR+ D  + + L    +K  ++DEAD+MLD+GF  +++ I  + P+K +
Sbjct: 120 KVSPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQALPEKLQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M++FSATI   +    K Y  +    ++  + +    I +  V V   DR +  + + + 
Sbjct: 180 MMVFSATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPVKHRDRSDLTLKLAKA 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+        +  E    V +L G+L  + R  A++ + + + +  I T
Sbjct: 240 LNPYICLVFTNTKTEAIELEALFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQYVIVT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+AARGID+  +  VI+  +  + +  +HR GRTGR  + G++
Sbjct: 300 DLAARGIDISGVSHVINHGIPKDLDFYVHRVGRTGRVDQDGLA 342


>gi|293335017|ref|NP_001168055.1| hypothetical protein LOC100381785 [Zea mays]
 gi|223945729|gb|ACN26948.1| unknown [Zea mays]
          Length = 388

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 166/309 (53%), Gaps = 16/309 (5%)

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL ++PTREL++Q+  E      +TGV V V  GG  + ++ R+L+ G  I+V TPGR
Sbjct: 8   PSALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRELERGVDILVATPGR 67

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRMLMFSATIS 190
           L D +    +++  ++ + LDEAD MLD+GF   +  I++      P  R+ ++FSAT  
Sbjct: 68  LVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPLPGARQTMLFSATFP 127

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---- 246
             I  +A ++  + + + +         I  R   V  +D+ + ++++L  H  ++    
Sbjct: 128 KEIQKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMDLL--HAQRDTGKQ 185

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+         L  + F   ++ G+ +QQER  AL+  + G+  + +ATDVA
Sbjct: 186 TLTLVFVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVA 245

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFR 361
           ARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++      N   + R    L +
Sbjct: 246 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSLARSLADLMQ 305

Query: 362 EANVSV-VW 369
           E+N  V  W
Sbjct: 306 ESNQEVPAW 314


>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
 gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
          Length = 782

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 188/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY   T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 184/355 (51%), Gaps = 10/355 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L L   +  +         P+A+ 
Sbjct: 100 YTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRHI-KDQRSLEQMEGPIAVV 158

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           + PTRELAVQ+ +E +  + K   + AVC  GG  +  +  +L+ GA I+V TPGR+ D 
Sbjct: 159 MTPTRELAVQIHKECKA-FLKVLNLRAVCAYGGSPIKDQIAELKKGAEIIVCTPGRMIDL 217

Query: 139 IR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +    G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT    + +
Sbjct: 218 LTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQTVLFSATFPKQMDS 277

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFC 251
           LA+      + + +   +   ++I+    +     + N ++ IL     ++     +VF 
Sbjct: 278 LARKILHKPLEITVGGRSVVAAEIEQIVEVRPEDTKFNRLLEILGQMYNEDPECRTLVFV 337

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             + +     + L    +  ++L G   Q +R + +   + G   + IAT VAARG+D+ 
Sbjct: 338 DRQEAADNLLRELMRKGYLCMSLHGGKDQVDRDSTIADFKSGVVPIVIATSVAARGLDVK 397

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
            L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R +  ++R    S
Sbjct: 398 QLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQERYSVDIYRAVKAS 452


>gi|68072041|ref|XP_677934.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498231|emb|CAH99198.1| RNA helicase, putative [Plasmodium berghei]
          Length = 855

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 177/365 (48%), Gaps = 39/365 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------- 66
           Y   T +Q+  L+  + + D++  AQTGSGKT  + L + + +L  +             
Sbjct: 289 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEDNNKN 348

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  G
Sbjct: 349 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 408

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
           A I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++          
Sbjct: 409 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 468

Query: 179 ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                             KR+ +MFSAT    I  LAK+Y  +   + +      +  I 
Sbjct: 469 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 528

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              V     ++ + ++ +L  +     I+F  T+       + L       V + G+ SQ
Sbjct: 529 QNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQ 588

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG 
Sbjct: 589 DERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGN 648

Query: 341 KGMSV 345
            G++ 
Sbjct: 649 IGIAT 653


>gi|195053518|ref|XP_001993673.1| GH20986 [Drosophila grimshawi]
 gi|193895543|gb|EDV94409.1| GH20986 [Drosophila grimshawi]
          Length = 689

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 182/340 (53%), Gaps = 7/340 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A++E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L     F P +
Sbjct: 211 AIAEMGFSEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLHFMPRN 268

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 269 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGRGINILVATPG 328

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 329 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTDR 388

Query: 193 ITTLAK-NYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I  L+K   +K+ + V +  + E      ++   ++     R   +   L+ +  K  +V
Sbjct: 389 IDALSKLALKKEPIYVGVHDSQETATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMV 448

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+D
Sbjct: 449 FFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLD 508

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           +P ++ ++  +   +P   +HR GRT R +G  G ++ ++
Sbjct: 509 IPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLML 548


>gi|126297926|ref|XP_001370951.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 31,
           [Monodelphis domestica]
          Length = 730

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 188/394 (47%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    S     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 151 PHLISTINSVLKMASMTSVQKQSIPSLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMKS 210

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           R   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 211 RIQRSDGPYALVLVPTRELALQSFDTIQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 270

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++   ++ +++DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 271 ILISTPGRLVDHIKSTKNIHFRRIQWLIIDEADRILDLGFEKDITVILNAINAECEKRQN 330

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-----------------RQHSDIDYRAVL 225
           ++ SAT++  +T LA     + V ++++ E                  R  ++ D  AV 
Sbjct: 331 VLLSATLTEGVTRLADISLHNPVSISVSDETCDQRTKGYKIAGESGPLRTSAEPDGFAVP 390

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASVSRFTKVLAEHL---- 268
             L      + + L+             +      IVF S+   V  +  +  + L    
Sbjct: 391 EKLQQHVTLVPSKLKLVTLAAFILGRCEFEKDHKLIVFFSSCELVEFYYHLFLQTLLGSS 450

Query: 269 --------------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                          + + L G + Q+ER+   Q     ++ + + TDVAARG+DLP + 
Sbjct: 451 TAPASGQSPSASSRLKFLRLHGNMEQEERTAVFQEFSLSKSGILLCTDVAARGLDLPQVT 510

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     S+P   +HR GRT R G  G S+ ++
Sbjct: 511 WIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLIL 544


>gi|323448800|gb|EGB04694.1| hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens]
          Length = 544

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 174/361 (48%), Gaps = 6/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   + ++G+   + +Q       L  +D++  ++TGSGKT+AF L     + A+
Sbjct: 155 SMPDYVLTEVMKQGFKEPSPIQAQGWPMALLGRDMIGISRTGSGKTLAFLLPGMIHINAQ 214

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L +APTRELAVQ+  E +   A + +      GG     +  DLQ G 
Sbjct: 215 P-YLQPGDGPIVLVLAPTRELAVQIKVECDKFGASSQIKNTCVYGGAPKRTQTGDLQRGV 273

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+
Sbjct: 274 EIVIATPGRLIDFLESGVTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMW 333

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  +A ++ KD  +V + S E   + DI      V    +   + + L+ HG 
Sbjct: 334 SATWPKEVRNMANDFLKDFYQVTVGSLELSANKDITQYVECVDDGAKYRRMTDFLKEHGV 393

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI----A 300
              IVF  T+    + ++ LA   F    + G+ +Q ER   L   R G+  + +    A
Sbjct: 394 DKMIVFVETKRGCDQLSRSLAHEGFPARCIHGDKAQDERDWVLNEFRSGKCPLLVATDRA 453

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
               AR        +V++ +  SN E+ +HR GR GRAG+KG ++    Q   + A  L 
Sbjct: 454 PRARARLTARLRRRMVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFFTQKSSKWASGLC 513

Query: 361 R 361
           +
Sbjct: 514 K 514


>gi|222622384|gb|EEE56516.1| hypothetical protein OsJ_05798 [Oryza sativa Japonica Group]
          Length = 648

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 190/362 (52%), Gaps = 13/362 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-ASTLLAE 65
           +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + A      
Sbjct: 189 LPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVR 248

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++NG 
Sbjct: 249 SERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGI 308

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I    S P+   ++
Sbjct: 309 ELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQ---VM 365

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RY 241
           MFSAT++  +  ++ +  K+A+ ++  + +R +  +    + V    +   I  I+  + 
Sbjct: 366 MFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQ 425

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           H    A+VF S+R      ++ +      +VV++ G+ +  ER  +L+    G   V + 
Sbjct: 426 HFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVC 485

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  +  N + R   LF
Sbjct: 486 TGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFV--NEEDR--NLF 541

Query: 361 RE 362
           RE
Sbjct: 542 RE 543


>gi|218190271|gb|EEC72698.1| hypothetical protein OsI_06281 [Oryza sativa Indica Group]
          Length = 648

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 190/362 (52%), Gaps = 13/362 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-ASTLLAE 65
           +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + A      
Sbjct: 189 LPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVR 248

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++NG 
Sbjct: 249 SERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGI 308

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I    S P+   ++
Sbjct: 309 ELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQ---VM 365

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RY 241
           MFSAT++  +  ++ +  K+A+ ++  + +R +  +    + V    +   I  I+  + 
Sbjct: 366 MFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQ 425

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           H    A+VF S+R      ++ +      +VV++ G+ +  ER  +L+    G   V + 
Sbjct: 426 HFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVC 485

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  +  N + R   LF
Sbjct: 486 TGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFV--NEEDR--NLF 541

Query: 361 RE 362
           RE
Sbjct: 542 RE 543


>gi|149242263|ref|XP_001526437.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032665|sp|A5E058|PRP5_LODEL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|146450560|gb|EDK44816.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 994

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 189/364 (51%), Gaps = 18/364 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF-SPASAPLA 77
           G+   + +Q   +   L  +D++  A+TGSGKT+++ L +   +  ++  F  P   P+ 
Sbjct: 407 GFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHI--QDQLFPKPGEGPIG 464

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA+Q+ +E+    +   + V  C GG ++  +  +L+ G +++V TPGRL D
Sbjct: 465 LVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNVIVATPGRLID 524

Query: 138 HIRGKGLNISHLKA---VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
            +   G  I+ L+    VVLDEAD M D+GF   I+ I       ++ ++FSAT    + 
Sbjct: 525 LLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQTVLFSATFPRKLE 584

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-----RDNAIVNILR--YHGAKNA 247
            LAK    + + + +   +   S+I    +L   +D     +   + +IL   +   KN 
Sbjct: 585 QLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHKIQKLEDILSRFFDLGKNT 644

Query: 248 ---IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA--RVCIATD 302
              +VF   +    +   VL +     +A+ G   Q +R +A++   D ++   V IAT 
Sbjct: 645 GKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQIDRKHAIREFSDDQSGINVLIATS 704

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L+LV++ E  S+ E+ +HR GRTGRAG+ G ++  +    ++    L + 
Sbjct: 705 IAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAITFVDNTQEKEISILVKA 764

Query: 363 ANVS 366
             +S
Sbjct: 765 LKMS 768


>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
 gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
          Length = 782

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 188/368 (51%), Gaps = 10/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY   T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       ++V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + +
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDI 518

Query: 360 FREANVSV 367
            + A  ++
Sbjct: 519 IKNAESTI 526


>gi|225451679|ref|XP_002276467.1| PREDICTED: similar to DEAD/DEAH box helicase family protein [Vitis
           vinifera]
          Length = 540

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 179/347 (51%), Gaps = 5/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+PQ + + +   GY   T VQ   +   L  K++LVSA TGSGKT +F + + S   + 
Sbjct: 143 NLPQKLLQNIEAAGYEIPTPVQMQAIPAALVGKNLLVSADTGSGKTASFLVPIVSRCTSI 202

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               SP    PLA+ + PTREL +QV  + + L        A+ +GG ++ R+   +Q G
Sbjct: 203 RPDHSPNQKNPLAMVLTPTRELCMQVEEQAKLLGKGLPFKTALVVGGDAMPRQLHRIQQG 262

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGRL D +    + +  +  +VLDE D ML+ GFRD +  I  +   + ++LM
Sbjct: 263 VELIVGTPGRLIDLLSKHEIELDDVFMLVLDEVDCMLERGFRDQVMQIYRAL-SQPQVLM 321

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYH 242
           +SATIS  +  +A +  KD + +++   NR +  +   A+ V    +   + +IL  + H
Sbjct: 322 YSATISQEVEKVASSMAKDIIVISVGKSNRPNIAVKQLAIWVESKQKKQKLFDILTSKQH 381

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +VF  +R      T+ +      + +++ GE S +ER   +     G   V +AT
Sbjct: 382 FTPPVVVFVGSRLGADLLTEAITITTGLKALSIHGEKSMKERREIMSSFLVGEVPVMVAT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +RG+DL  +  VI  ++ ++ +  +H+ GR  R G +G ++  +
Sbjct: 442 GVLSRGVDLLSVRQVIVFDMPNSIKEYVHQIGRASRLGEEGTAILFL 488


>gi|170094876|ref|XP_001878659.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647113|gb|EDR11358.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 617

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 175/357 (49%), Gaps = 14/357 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            IP+ I E L  +  V  T +Q   +      +D++  A TGSGKT+AF L L    L E
Sbjct: 187 KIPEAILEYLKSKRIVTPTPIQLQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIMLALEE 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGREL-EWL--YAKTGVVVAV----CIGGVSVHR 116
             +  F     P+ + + P+RELA Q    +  W    AK G    +    C+GG+S+  
Sbjct: 247 ESKLPFVRGEGPVGIILCPSRELANQTYENVVTWCAALAKDGKYPPLNSLLCMGGISMSD 306

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +  G HIVV TPGRL D +  K   +   K + +DEAD M+DLGF +D+  I+   
Sbjct: 307 QSHVMSKGLHIVVATPGRLIDMLEKKKFTLDSCKYLCMDEADRMIDLGFEEDVRNIMSFF 366

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT+   I   A+      V VN+      + D+     +V    ++  +V
Sbjct: 367 KHQRQTLLFSATMPRKIQEFARESLIKPVLVNVGRAGAANLDV---LQVVEYVKQEAKMV 423

Query: 237 NILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +L          I+F   +  V    + L     + VA+ G  +Q+ER  A++  + G 
Sbjct: 424 YLLECLQKTPPPVIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKSFKSGA 483

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             V +A+ VA++G+D  +++ VI   +    E+ +H+ GRTGR+G+ G++   +  N
Sbjct: 484 KDVMVASGVASKGLDFSEIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFVNMN 540


>gi|194767109|ref|XP_001965661.1| GF22616 [Drosophila ananassae]
 gi|190619652|gb|EDV35176.1| GF22616 [Drosophila ananassae]
          Length = 921

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 127/414 (30%), Positives = 188/414 (45%), Gaps = 83/414 (20%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           LT+VQ+  + P L  KDVLV +QTGSGKT+A+ L L   L  +  R       LAL I P
Sbjct: 292 LTTVQQKAIPPILERKDVLVRSQTGSGKTLAYALPLVEILQKQQPRIQRKDGVLALVIVP 351

Query: 83  TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-R 140
           TREL +Q    L+ L    T +V    +GG S   E+  L+ G +I+VGTPGRL DH+  
Sbjct: 352 TRELVMQTYELLQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILVGTPGRLVDHLLH 411

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-----------RMLMFSATI 189
                ++ L+ +VLDEAD +L+LG+  D++ ++++  K+R           + L+ SAT+
Sbjct: 412 TASFRLTRLQFLVLDEADRLLELGYERDVKQLVEAIDKQRSEAEQKDLPQLQRLLLSATL 471

Query: 190 SPAITTLA------------------------KNYQKDAVRVNIASEN----RQHSDI-- 219
           +  +  LA                          YQK+++   +  E         D+  
Sbjct: 472 TSQVQQLAGLTLKDPLYIDNSDEAASLALKSKDGYQKESIEAQLGVEEDGLGEYQEDVTG 531

Query: 220 --------DYRAVLVALSDRDNAIVNILRYHGAKN-----AIVFCSTRASVSRFTKVLAE 266
                       V+V    R  A+ ++L      +     AIVF ST   V+    +L E
Sbjct: 532 VLSIPENLQLSYVVVPPKLRLVALSSLLAKEVEASPKQFKAIVFMSTTEMVNFHHDMLNE 591

Query: 267 HL--------------------------FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            L                           +   L G ++Q ER    +  RD  + V +A
Sbjct: 592 ALTRRVLDEEDEKDDEEEDDGEEPLLPGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLA 651

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           TDV  RGID+PD++LV+         + +HR GRT RAGRKG +V F+ P   Q
Sbjct: 652 TDVVGRGIDVPDVKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLAPSESQ 705


>gi|156064101|ref|XP_001597972.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980]
 gi|160380631|sp|A7E436|DBP8_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp8
 gi|154690920|gb|EDN90658.1| hypothetical protein SS1G_00058 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 540

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 184/349 (52%), Gaps = 33/349 (9%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q+  +   L+ +D +  ++TGSGKTVAF + +        D F       AL + PT
Sbjct: 135 TGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKW--AEDPF----GIFALVLTPT 188

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q+  + + + +   +   +  GG  +  +   L    H+V+ TPGRL DHIR  G
Sbjct: 189 RELALQIYEQFKAISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPGRLADHIRTSG 248

Query: 144 LN----ISHLKAVVLDEADEMLDLG----FRDDIEFILD--SSPKKRRMLMFSATISPAI 193
            +    +  ++ VVLDEAD +L  G       D+E  L     P +R+ L+F+AT++P +
Sbjct: 249 EDTVCALRRVRMVVLDEADRLLASGSVGSMLPDVEECLSLLPPPSERQTLLFTATVTPEV 308

Query: 194 TTLAKNYQKDAVR------VNIASENRQ----HSDIDYRAVLVALSDRDNAIVNIL--RY 241
             L     KD  R      V +   + Q     S ++   + V ++ R++ +   L    
Sbjct: 309 RAL-----KDMPRTLGKPPVFVCEVDTQALAIPSSLNQMHLQVPVTHREHYLHMFLLTEK 363

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K+ ++FC+  A+    T +L     +V AL  +L Q++R + L   R   AR+ +AT
Sbjct: 364 NLPKSIVIFCNRTATADYLTHLLRLLEHRVTALHSKLPQRQRIDNLGRFRASAARILVAT 423

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           DVAARG+D+P++ LVI+ ++  +P++ +HR GRT RAGRKG +V  + Q
Sbjct: 424 DVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTARAGRKGEAVTFVGQ 472


>gi|121704012|ref|XP_001270270.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
           NRRL 1]
 gi|143586067|sp|A1CMQ7|SUB2_ASPCL RecName: Full=ATP-dependent RNA helicase sub2
 gi|119398414|gb|EAW08844.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
           NRRL 1]
          Length = 441

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 197/377 (52%), Gaps = 25/377 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L     L        P  
Sbjct: 72  AITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQL-------EPVP 124

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAKTG-----VVVAVCIGGVSVHRERRDLQNG--- 124
              + L +  TRELA Q+  E    YA+       V  AV  GG  + ++   L N    
Sbjct: 125 GECSVLVMCHTRELAYQIKNE----YARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESY 180

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            +IVVGTPGRL   +R K L++ ++KA VLDE D+MLD +  R D++ I  ++P  ++++
Sbjct: 181 PNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVM 240

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRY 241
           MFSAT+S  I  + K + ++ + V +  + +   H    Y  + ++ S+++  +  +L  
Sbjct: 241 MFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQY-YIKLSESEKNRKLNELLDS 299

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+AT
Sbjct: 300 LEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVAT 359

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+S+ FV  ++ ++  + + 
Sbjct: 360 DVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIE 419

Query: 361 REANVSVVWEPAPSVEA 377
           +   V++   P   V++
Sbjct: 420 KRFEVALPEYPEGGVDS 436


>gi|83286284|ref|XP_730094.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489719|gb|EAA21659.1| DEAD box polypeptide, Y chromosome-related [Plasmodium yoelii
           yoelii]
          Length = 908

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 177/365 (48%), Gaps = 39/365 (10%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN------------- 66
           Y   T +Q+  L+  + + D++  AQTGSGKT  + L + + +L  +             
Sbjct: 342 YDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYEDNNKN 401

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               ++    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  +L  G
Sbjct: 402 SNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLSNLDKG 461

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
           A I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++          
Sbjct: 462 ADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMPGNDND 521

Query: 179 ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                             KR+ +MFSAT    I  LAK+Y  +   + +      +  I 
Sbjct: 522 SYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGSTNEYIK 581

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              V     ++ + ++ +L  +     I+F  T+       + L       V + G+ SQ
Sbjct: 582 QNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIHGDKSQ 641

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRTGRAG 
Sbjct: 642 DERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRTGRAGN 701

Query: 341 KGMSV 345
            G++ 
Sbjct: 702 IGIAT 706


>gi|291392612|ref|XP_002712706.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
           [Oryctolagus cuniculus]
          Length = 406

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 173/352 (49%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+        Y+ V              
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK--------YQTV-------------- 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                                      E L Q         + +R  +L   +     + 
Sbjct: 236 ---------------------------EKLQQYYIFIPSKFKSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|303390845|ref|XP_003073653.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302800|gb|ADM12293.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 483

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 186/347 (53%), Gaps = 8/347 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           +IF   P+++ + + + GY   + VQ A +   L+ +D+LV ++ G+GKT ++ + + + 
Sbjct: 115 EIFGLKPKLL-KRIQDIGYNFPSPVQVASIPHALKGRDMLVRSKNGTGKTASYTIPILNA 173

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E            + + P RELA+Q+ R ++ L    GV+ A  +GG ++  +   +
Sbjct: 174 INPEELNIQ------GIILVPIRELALQISRNVKRLSEGMGVISAPIVGGTNMQDDIIRV 227

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            NG H++VGTPGR+ D I  K   +S    +V DEAD++LD+ F + +  +LD  P++R 
Sbjct: 228 SNGVHVMVGTPGRIVDLIEKKIGVLSKKIILVFDEADKLLDVTFGETVTRLLDILPRERH 287

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +T   K Y +D + +N+  E      +     +V  S++   + ++L  
Sbjct: 288 ILLYSATFPYFVTGFIKRYMRDPLCLNLMKE-LVPVGVKQFYTIVKPSEKLLCLRSLLLK 346

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++FC+   +V      + E       +  +++Q++R+        G+ ++ +AT
Sbjct: 347 LKINQCVIFCNNIKTVELLAMKVTEIGIPSYFIHSKMTQEDRNIVFHNFLKGKCKILVAT 406

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  RG+D+P+   VI+ ++  +PE+ LHR GR GR G  G+++ ++
Sbjct: 407 DLITRGVDVPNTNYVINFDIPKSPESYLHRIGRAGRFGTPGVAISLV 453


>gi|260584215|ref|ZP_05851963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260158841|gb|EEW93909.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 443

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 174/348 (50%), Gaps = 12/348 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL +  +   T +QE I+   L+ + V+  +QTGSGK+ +F L L         +  
Sbjct: 12  LQQALEKLSFSTPTKIQEKIIPLLLKGESVIGQSQTGSGKSHSFLLPLIH-------KID 64

Query: 71  PASAPLALAIA-PTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNGA-H 126
           P    L L I  P+RELA Q+ R    L   A T +++  C+GG    R+ + LQ  A H
Sbjct: 65  PDKQELQLVITVPSRELAEQLVRVTSQLIEEAPTPILLEKCVGGTDKLRQVQKLQQTAPH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D +R   L I     +V+DEAD   DLGF + ++ I    PK  +M +FS
Sbjct: 125 IVIGTPGRIFDLMRENALLIQTATMMVVDEADMTFDLGFLETVDEIASRMPKDLQMSVFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I    K Y  +   +++ ++      I  + ++    +    +  ++       
Sbjct: 185 ATIPDKIKPFLKKYLGNPKIIHVENKQLVSPTITNQLLVTKTKNPLEVLFELITLGHPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F +T+      T  L E   +V  + G++  +ER   ++ ++    +  +ATD+AAR
Sbjct: 245 MLIFVNTKQKADEVTAFLREKSLKVATIHGDIPARERRRVMKQIQQMEYQYVVATDLAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           GID+  +  VI+ E+ S  E  +HR GRTGR G  G ++ F  P   Q
Sbjct: 305 GIDIEGVSHVINLEIPSELEFFIHRVGRTGRNGLAGQAITFYTPNQEQ 352


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 175/344 (50%), Gaps = 11/344 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL + G+V  T VQE ++      + V+  +QTGSGKT AF       LL  
Sbjct: 8   NLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAF-------LLPI 60

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQ 122
            ++  PA +A  A+   P+RELA Q+    + L A  +T + +   +GG    R+   L+
Sbjct: 61  FNQIDPAKNAIQAVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKRQIAKLE 120

Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    IV+GTPGR+ D ++ + LN   ++ +V+DEAD  LD+GF   ++ I  S P+  +
Sbjct: 121 HHQPAIVIGTPGRVLDLLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAASMPENLQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    + Y K      I         I    +     D++N I  +L  
Sbjct: 181 MLVFSATIPQQLNVFLQKYMKHPAIEEIPVATTISPTIKNILISTKSQDKNNLIYQLLTM 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+      T  L      V  + G +  +ER   ++ +   R +  +AT
Sbjct: 241 GEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRYQYVVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+AARGID+  + LVI+ ++ ++ E  +HR GRTGR G  G ++
Sbjct: 301 DLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAI 344


>gi|195028797|ref|XP_001987262.1| GH20064 [Drosophila grimshawi]
 gi|193903262|gb|EDW02129.1| GH20064 [Drosophila grimshawi]
          Length = 806

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 199/436 (45%), Gaps = 96/436 (22%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           IP  I  AL+E+GY   T +Q   L   +  +KD+L +A+TGSGKT+AFG+ + S ++  
Sbjct: 204 IPTSIMRALAEQGYEAPTQIQAMTLPAAIHGKKDILGAAETGSGKTLAFGIPILSGIMEL 263

Query: 64  -----------------------------AENDRFSPASAPL------------------ 76
                                         EN   +P    L                  
Sbjct: 264 KQRNDGSGIRTRAPKHKVEATVEAEVPTSKENHELTPPPEELDYVSGASEEESDAEDYSS 323

Query: 77  -------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL + PTRELAVQV   L      TG+ VA   GG+SV ++ R L+    IVV
Sbjct: 324 SGRRPLYALVLTPTRELAVQVKNHLVAAAKYTGIRVAAIFGGLSVAKQERVLRQCPEIVV 383

Query: 130 GTPGRLCD-HIRG-KGLN-ISHLKAVVLDEADEMLDLGFRDDIEFIL------DSSPKKR 180
            TPGRL + + +G K LN I H+  + +DE D M++ G  +++  +L      +   + R
Sbjct: 384 ATPGRLWELYAQGNKHLNKIEHVNFLCIDETDRMVEKGHFEELRMLLKVLNAHEERKQLR 443

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR----------------------------VNIASE 212
           +  +FSAT++  I  L ++ QK  +                             V+I S 
Sbjct: 444 QNFVFSATLT-LIHDLPEHMQKRNLAKRPKFTKQTVDQKIESLIEELGISQPKIVDITSS 502

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
            +    +    +L A+ ++D  +   ++ H  + +IVFC++   V R   +        +
Sbjct: 503 QQTAQTLTESRLLCAIDEKDYYLYYFVQRHPGR-SIVFCNSIDCVKRLATLFGLLECNPL 561

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L   + Q++R   L+  RD    + IATDVAARG+D+P++E VIH ++    EN +HRS
Sbjct: 562 PLHANMIQKQRLKNLERFRDSSTGLLIATDVAARGLDIPNVEHVIHYQVPRTSENYVHRS 621

Query: 333 GRTGRAGRKGMSVFVI 348
           GRT RA + G++V  +
Sbjct: 622 GRTARANKHGITVMFM 637


>gi|163790997|ref|ZP_02185419.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159873736|gb|EDP67818.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 449

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 170/337 (50%), Gaps = 11/337 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A++E G+   T VQ+ ++      K V+  +QTGSGKT  F L L        ++  P+
Sbjct: 16  DAITEIGFTQPTEVQQKLIPAIQNGKSVIGQSQTGSGKTHTFLLPLV-------NKIDPS 68

Query: 73  SAPLALAIA-PTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
              + + I  P+RELA Q+ +    L  K  T ++V   +GG    R+   L     HIV
Sbjct: 69  RKEVQVVITTPSRELAEQIYQAALQLVEKAPTKIIVQNFVGGTDKKRQMTKLSGTQPHIV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ D +  K L I     +V+DEAD  LD+GF  D++ I    P+K +ML+FSAT
Sbjct: 129 IGTPGRILDLVTEKSLLIHTSPVLVIDEADMTLDMGFLTDVDQIASKLPEKLQMLVFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   +    K Y  + +   I  +      ID   +     DR + I  +L        +
Sbjct: 189 IPIKLQPFLKKYMSNPLFEQIQPKAIISPTIDNWLISTKGKDRIDVIYELLTIGQPYLVM 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T++ V      L     +V  + G++  +ER   ++ +++   +  +ATD+AARGI
Sbjct: 249 IFANTKSKVDELADGLKSRGLKVAKIHGDIPPRERKRVMKQVQNLEYQFVVATDLAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  +  VI+AE+  +    +HR GRTGR   KG ++
Sbjct: 309 DIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAI 345


>gi|18376223|emb|CAD21338.1| related to RNA helicase MSS116 [Neurospora crassa]
          Length = 695

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 181/360 (50%), Gaps = 27/360 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL   GY N+T VQE +LN     +D LV A+TG+GKT+AF L    TLL   D   P+
Sbjct: 112 KALDAMGYANMTPVQEKVLNMGSFTQDCLVQAKTGTGKTIAFLLPALHTLLNAKD-LDPS 170

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGG-VSVHRERRDLQNGAHIVV 129
              L L +APTRELA Q+  E E L ++        + +GG        + L+    I+V
Sbjct: 171 QVAL-LILAPTRELAQQIVDECEKLVSQCNPRFECHLAVGGSAKASSLSKFLRGKPTILV 229

Query: 130 GTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM----L 183
            TPGRL D++  + +    ++L+ +VLDEAD MLD GF   +  IL S PKK++     +
Sbjct: 230 ATPGRLDDYLSDERVRQKFNNLRCLVLDEADCMLDQGFLPALTKILTSLPKKQQAGWQGM 289

Query: 184 MFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NIL 239
            FSAT+ P+I   L          ++   EN   +        + +   D+ +    N+L
Sbjct: 290 CFSATLPPSIHKVLHHVLAPKHAHISTVDENEAPTINSVPQSYMKVDSVDDVLPTLHNLL 349

Query: 240 ---RYHGAK-NAIVFCSTRASVSRFTKVLAEHL-------FQVVALSGELSQQERSNALQ 288
              RY   K  A+VFCST A  +     L  H          V  +   ++Q +R+   +
Sbjct: 350 SAERYDNPKLKAVVFCST-ARQAALLYTLFGHTGGASPAKLPVWQMQSRMNQAQRTRTTE 408

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++  + +  A+DV  RG+D PD+ LVI   +  N E  +HR GRTGRAG+ G +V +I
Sbjct: 409 EFKNTDSGILFASDVVGRGLDFPDIHLVIQVGIPLNSEQYVHRVGRTGRAGKGGRAVMII 468


>gi|328773869|gb|EGF83906.1| hypothetical protein BATDEDRAFT_15345 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 15/440 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ   + P +  +D+L +A+TGSGKT+AF   + +  L    +F P +    L I+P
Sbjct: 1   MTEVQARSIPPAMTGRDILGAAKTGSGKTLAF--LIPAIELLHKLQFKPRNGCGVLIISP 58

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG- 141
           TRELA+Q+    + L+        + +GG +   E   L  G +++V TPGRL DH++  
Sbjct: 59  TRELALQIFGVAKELFEHHSQTFGILMGGANRKAEAEKLGKGVNLIVATPGRLLDHLQNT 118

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK-NY 200
           K     +LK +++DEAD +L++GF +++  I+   P +R+ ++FSAT +  +  LA+ + 
Sbjct: 119 KSFIFKNLKMLIIDEADRILEVGFEEEMHKIIGLLPTERQTMLFSATQTTKVEDLARVSL 178

Query: 201 QKDAVRVNIASENRQHSD--IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +K  + +N+       ++  ++   V+     R   +   L+ +  K  IVF S+  SV 
Sbjct: 179 KKAPLYINVDEHKDMATNEGLEQGYVICPSEQRFLLLFTFLKKNLKKKIIVFFSSCNSVK 238

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              ++L      V+ L G+  QQ+R++      +  + V + TDVAARG+D+P ++ ++ 
Sbjct: 239 YHAELLNFIDIPVLDLHGKQKQQKRTSTFFEFVNAESGVLLCTDVAARGLDIPAVDWILQ 298

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSV-VWEPAPSVE 376
            +   +P   +HR GRT RAG +G + +F++P  +     R  + A V +  ++  P+  
Sbjct: 299 FDPPDDPREYIHRVGRTARAGGRGKALLFLLPTELG--FLRYLKHAKVPLNEYQFPPNKI 356

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-AGFLRIHRA----GLCAP 431
           A  +   +R+++   +L+    D  +      A H  +KI   G L + R     G   P
Sbjct: 357 ANVQGQLERLIEKNYYLNRSAKDGYRSYLQAYASHSLKKIFDVGVLDLQRVAKAYGFTVP 416

Query: 432 EEITPVSLVSGRDRFRDDSR 451
             +      SG+   R  ++
Sbjct: 417 PSVNLTMGASGKTDRRQQNK 436


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 182/368 (49%), Gaps = 15/368 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   L   D++  AQTG+GKT A+ L + S L    D   P      + ++PT
Sbjct: 25  TPIQEKCIPEILNGHDIMGVAQTGTGKTAAYLLPILSRLA---DGGFPDETINCVIMSPT 81

Query: 84  RELAVQVGRELEWL--YAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           RELA Q+ + ++    Y +    VAV  G  G    +E + L+ GA +V+ TPGRL  H+
Sbjct: 82  RELAQQIDQAMQGFGYYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIATPGRLISHL 141

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               ++ S +   VLDEAD MLD+GF DDI  I    PK  +++MFSAT+   I  LA  
Sbjct: 142 SLGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSATMPSKIEELAAT 201

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
             K+ V V IA  ++    I   A +     +   I +I +       I+F   +  V  
Sbjct: 202 MLKNPVEVKIAV-SKPAEKIKQTAYVCYEPQKLGIIKHIFKAGNLTRTIIFSGKKNKVKD 260

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             + L     +   +  +L+Q ER   +   + G   V +ATD+ ARGID+ D+  VI+ 
Sbjct: 261 INRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVARGIDIDDIYTVINY 320

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAERLFREANVSVVWEPA 372
           ++  + E+ +HR GRT RA R G ++  +        Q++++  E+   +  +      A
Sbjct: 321 DVPRDAEDYVHRIGRTARAERDGNAITFVSDADISYFQSIEKFLEKEVEKLPLPAALGEA 380

Query: 373 PSVEAIRE 380
           P+ + +++
Sbjct: 381 PAYKVVKK 388


>gi|221504486|gb|EEE30159.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1544

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 183/360 (50%), Gaps = 11/360 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
            +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L   +L+ +
Sbjct: 980  LPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRHVLSVK 1039

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               F   +  +AL IAPTREL  Q+ +E+        +    C GG  +  +   ++ G 
Sbjct: 1040 QQDFRDGA--IALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKRGV 1097

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             ++VGTPGRL D +   G  ++ LK V   VLDEAD M D GF   +  I+ SS   R+ 
Sbjct: 1098 EVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPDRQT 1157

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--- 239
             +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ +L   
Sbjct: 1158 CLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            + HG+   I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   + I
Sbjct: 1218 QEHGS--VIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRTLLI 1275

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A+ L
Sbjct: 1276 ATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKADDL 1335


>gi|70953337|ref|XP_745776.1| DEAD/DEAH box ATP-dependent RNA helicase [Plasmodium chabaudi
           chabaudi]
 gi|56526204|emb|CAH78677.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           chabaudi chabaudi]
          Length = 579

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 180/363 (49%), Gaps = 3/363 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   + + L E  ++ LT +Q   +   L  KD+L +A+TGSGKT+AF   + S  +  
Sbjct: 132 DICDALKKGLKELNFITLTEIQSKCIPHFLSGKDILGAAKTGSGKTLAF--LVPSINILY 189

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +F P +    L I+PTREL +Q+ +    L         + IGGVS + E++   +G 
Sbjct: 190 NIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKFIHGI 249

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++ TPGRL DH++  K  N  +L  +++DEAD +L +GF ++I  I+   PKKR+  +
Sbjct: 250 NILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKRQTAL 309

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  + +L +   +  + + + ++      +     LV    R   +   L+ + +
Sbjct: 310 FSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKRNPS 369

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF +   SV  +  +L         + G+  Q +R  +       +  + + T+VA
Sbjct: 370 KKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAILLCTNVA 429

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P++  +I  +   + +  +HR GRT R      S  +     + +     +  N
Sbjct: 430 ARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIFLMKHELKFLNYLKFYN 489

Query: 365 VSV 367
           + V
Sbjct: 490 IPV 492


>gi|167762759|ref|ZP_02434886.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
 gi|167699099|gb|EDS15678.1| hypothetical protein BACSTE_01117 [Bacteroides stercoris ATCC
           43183]
          Length = 443

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 178/359 (49%), Gaps = 18/359 (5%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
            LT +QEA  +    +KD+++ + TGSGKT+AF L L  +L A+           A+ + 
Sbjct: 14  QLTPMQEAARDAYQSDKDLVLLSPTGSGKTLAFLLPLVQSLKAD------VQGVQAVVLV 67

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQN-GAHIVVGTPGRLCDH 138
           P+RELA+Q+    E ++    V      C GG     E R ++     +++GTPGR+ DH
Sbjct: 68  PSRELALQI----ENVFKSMNVPFKAMSCYGGRPAMDEHRTMRGINPAVIIGTPGRMNDH 123

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R +  +   +  +V+DE D+ L+ GF D++  ++   P  ++ ++ SAT +  I     
Sbjct: 124 LRKQNFDTRFVTTLVIDEFDKCLEFGFHDEMAEVIGQLPALKKRVLLSATDAEEIPQFTG 183

Query: 199 ----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
                     V++N  S       +D + V+    D+   +  +L   G ++ +VF + R
Sbjct: 184 VGGGESSPQVVKLNFLSGETVSGRLDLQKVISPEKDKLETLYRLLCTLGDRSTLVFVNYR 243

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            SV R    L    F   A  G + Q +R  AL   R+G   V ++TD+AARG+D+P ++
Sbjct: 244 ESVERTVSYLKSKKFPCDAFHGGMEQDDRERALYKFRNGSCPVLVSTDLAARGLDIPGID 303

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            V+H  +  N E   HR+GRT R   +G S F++    +R  + L  E +V  + E  P
Sbjct: 304 NVVHYHMPVNEEAFTHRNGRTARWEARGSS-FLLLHAEERLPDYLPEELSVFELPEQTP 361


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 189/365 (51%), Gaps = 14/365 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA----L 58
           +FE  P ++   + + G+   T +Q       L+  D++  AQTG+GKT+A+ +     L
Sbjct: 171 VFEQYPDIMAN-IRKIGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHL 229

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRE 117
           AS  + +++R  P      L +APTRELA+QV  E E L        ++CI GG     +
Sbjct: 230 ASQPIPKDERGGPG----MLVLAPTRELALQV--EAECLKYTYKGYKSICIYGGGDRKAQ 283

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +  G  IV+ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL    
Sbjct: 284 INVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADKMLDMGFEPQIMKILIDVR 343

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236
             R+ +M SAT    +  LAK+Y ++ + V + + +    + ++ + V++   ++   + 
Sbjct: 344 PDRQTVMTSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVVVINEEEKKAFME 403

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           N +     K+ AI+F   +++       L      V +L G+  Q +R  AL   + G+ 
Sbjct: 404 NFIDSMKPKDKAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDFKKGKV 463

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G +V +I +   + 
Sbjct: 464 RILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKA 523

Query: 356 AERLF 360
           A  L 
Sbjct: 524 ASELI 528


>gi|323348660|gb|EGA82903.1| Dbp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 290

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/276 (33%), Positives = 160/276 (57%), Gaps = 9/276 (3%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L I+PTRELA Q+   L  L  K G+      GGV    +R  L+  + +VV TPGRL 
Sbjct: 11  VLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKK-SQVVVATPGRLL 69

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPKKRRMLMFSATISPAITT 195
           D ++   +++S +  +VLDEAD ML+ GF +DI+ I+ ++   KR+ LMF+AT    +  
Sbjct: 70  DLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRE 129

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILR-YHGA----KNAI 248
           LA  +  + ++V+I + ++  ++     ++  +  R  +  ++ +L+ YH      +  +
Sbjct: 130 LASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVL 189

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +   +R  + L  + + V A+ G+LSQQ+R+ AL   + G++ + +ATDVAARG+
Sbjct: 190 IFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGL 249

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           D+P+++ VI+       E+ +HR GRTGRAG+ G +
Sbjct: 250 DIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTA 285


>gi|198429557|ref|XP_002122407.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 2 [Ciona intestinalis]
          Length = 575

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 207/389 (53%), Gaps = 13/389 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+ ++  +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    RF P 
Sbjct: 103 KAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAF--LIPAIELMYKLRFMPR 160

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTRELA+Q+   L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 161 NGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAKKLGNGINIIVATP 220

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++  +     +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 221 GRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPKRRQTMLFSATQTK 280

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            I  LA+ + +K  + V +  ++ Q + +D   +   V  S+ R   +   LR +  K  
Sbjct: 281 KIEDLARVSLKKMPLYVGV-DDSEQSATVDGLEQGYAVCPSEKRFLVLFTFLRRNRDKKV 339

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L       +++ G   Q +R+       +    + + TDVAARG
Sbjct: 340 MVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADKGILLCTDVAARG 399

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFREANV 365
           +D+P+++ ++  +   +P+  +HR GRT R   GR    +F+ P  +        R A V
Sbjct: 400 LDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGRGHALLFLRPSELG--FLHYLRHAKV 457

Query: 366 SVV-WEPAPSVEAIRERDAQRILQDPLFL 393
            V  +E + S  A  +   +R++Q   FL
Sbjct: 458 PVSEFEFSWSKIANIQTQLERLIQKNYFL 486


>gi|118482305|gb|ABK93079.1| unknown [Populus trichocarpa]
          Length = 428

 Score =  160 bits (406), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 181/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L   STL     +  P S
Sbjct: 61  SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL---STL----QQIEPTS 113

Query: 74  AP-LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
              +AL +  TRELA Q+  E E          VAV  GGV++   +  L+N   HIVVG
Sbjct: 114 GQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVG 173

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 174 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 233

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +   L  L +++  + ++L        
Sbjct: 234 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEL-EKNRKLNDLLGALDFNQV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD+  RG
Sbjct: 293 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  +++VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 353 IDIERVDIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 390


>gi|330859827|emb|CBX70159.1| ATP-dependent RNA helicase rhlB [Yersinia enterocolitica W22703]
          Length = 382

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/307 (33%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 44  AQTGSGKTVAFGLALASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
           AQTG+GKT+AF  +    LL   AE  R +  + P AL +APTRELAVQ+  + E L   
Sbjct: 7   AQTGTGKTLAFLASTFHYLLSHPAEEGRQT--NQPRALIMAPTRELAVQIHSDAESLSQV 64

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
           TG+ + +  GG    ++ + L++G  I++GT GRL D+ +   +N+  ++ VVLDEAD M
Sbjct: 65  TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRM 124

Query: 161 LDLGFRDDIEFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
            DLGF  DI ++    P   KR  ++FSAT+S  +  LA     +A  V +    +    
Sbjct: 125 YDLGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHR 184

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I       +  ++   +  ++        I+F +T+         LA    +V  L+G++
Sbjct: 185 IQEELFYPSNEEKMRLLQTLIEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDV 244

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q++R   L+    G   + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRA
Sbjct: 245 AQKKRLRILEDFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRA 304

Query: 339 GRKGMSV 345
           G  G S+
Sbjct: 305 GESGHSI 311


>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
 gi|74672247|sp|Q4WRV2|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
 gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           Af293]
 gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           A1163]
          Length = 830

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 174/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 316 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 373

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 374 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 430

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ 
Sbjct: 431 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQT 490

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++ ++  L +      VR+ + S+     ++    V +     D  +  +L   
Sbjct: 491 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLC 550

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R   V      +   L G +SQ++R  +++  R+G+   
Sbjct: 551 NEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAF 608

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 609 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 658


>gi|281422440|ref|ZP_06253439.1| ATP-dependent RNA helicase DbpA [Prevotella copri DSM 18205]
 gi|281403503|gb|EFB34183.1| ATP-dependent RNA helicase DbpA [Prevotella copri DSM 18205]
          Length = 439

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 174/322 (54%), Gaps = 13/322 (4%)

Query: 28  EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87
           +AIL+ +   KDV+V + TGSGKT+A+ L L   + A +D         A+ + P RELA
Sbjct: 22  QAILHGN---KDVVVLSPTGSGKTLAYLLPLTQLIDATDDEAQ------AVVVTPGRELA 72

Query: 88  VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRGKGLNI 146
           +Q    L+ +   +G+    C GG +   E R + Q    IV GTPGRL DH+    L+ 
Sbjct: 73  LQSANVLKNM--GSGLRAMACYGGRATMDEHRVMKQVRPQIVFGTPGRLNDHLDKGNLSP 130

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
            H+K +++DE D+ L++GF+D++  ++ S P  RR  + SAT +  I       + + + 
Sbjct: 131 YHIKYLIIDEFDKCLEMGFQDEMSRLIKSLPGLRRHFLLSATEAEEIPHFVHMGRVEKID 190

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
             +  E++    +    V   + D+  ++  +LR  G ++ IVF + R SV R  K L E
Sbjct: 191 YRV-DEDQVPDRVHIYKVDSPVKDKLESLSLLLRSLGDQSTIVFLNYRDSVERTNKYLVE 249

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F      G L Q+ER  +L    +G A + ++TD+A+RG+D+PD++ +IH  +  + +
Sbjct: 250 QGFSTSFFHGGLEQKEREASLYRFSNGSANILVSTDLASRGLDIPDIDNIIHYHMPESED 309

Query: 327 NLLHRSGRTGRAGRKGMSVFVI 348
             +HR GRT R   +G + F++
Sbjct: 310 GYIHRVGRTARWEAQGKAFFLL 331


>gi|126512824|gb|ABO15582.1| vasa-like protein [Acyrthosiphon pisum]
          Length = 494

 Score =  160 bits (406), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/325 (31%), Positives = 171/325 (52%), Gaps = 9/325 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +V+ E L +  Y   T +Q+  +   +  +D++ +AQTGSGKT AF L +  TLL++   
Sbjct: 170 EVLIEKLVKCNYTTPTPIQKYCIPVIISGRDMMATAQTGSGKTAAFVLPIVHTLLSQPQD 229

Query: 69  F---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+   +  L   T +  ++  GG +   +R  L NG 
Sbjct: 230 LVFDRDYCEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATGHQRGTLANGI 289

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----KKRR 181
           HI+V TPGRL D +    ++ + L+  VLDEAD MLD+GF+ DIE IL+         R+
Sbjct: 290 HILVATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNHETMVDVNTRQ 349

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            L+FSAT++  I  L+K Y K + V V +        D+      V   ++   ++ +L 
Sbjct: 350 TLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREVTKFEKKKELIKVLE 409

Query: 241 YHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             G  K  +VF   + +       L+E  +   ++ G+  Q ER  AL+  ++ R ++ +
Sbjct: 410 SLGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRDFKNNRMKILV 469

Query: 300 ATDVAARGIDLPDLELVIHAELSSN 324
           AT VAARG+D+  +  VI+ ++ S+
Sbjct: 470 ATAVAARGLDIKGVNCVINFDMPSS 494


>gi|332019236|gb|EGI59746.1| ATP-dependent RNA helicase WM6 [Acromyrmex echinatior]
          Length = 428

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 183/346 (52%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L L EN
Sbjct: 51  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTEN 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
             +        L +  TRELA Q+ +E E +      V V V  GG+ + ++   L+   
Sbjct: 110 QVY-------VLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEMLKTVC 162

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   +R K LN+ HLK  +LDE D+ML+L   R D++ I  S+P  ++++
Sbjct: 163 PHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVM 222

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +   + +    V +  ++++  +  +L   
Sbjct: 223 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVL 282

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   ++Q+ER +  Q  +D + R+ +AT+
Sbjct: 283 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATN 342

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ ++
Sbjct: 343 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLV 388


>gi|149631935|ref|XP_001509692.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 859

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 180/341 (52%), Gaps = 8/341 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +  +L  +  +++  
Sbjct: 79  KGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLESLYRQ--QWTSM 136

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
                L I+PTRELA Q    L  +         + IGG  + +E   + N  +I++ TP
Sbjct: 137 DGLGVLIISPTRELAYQTFEVLRKVGKNHEFSAGLIIGGKDLKQESERI-NQINILICTP 195

Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL  H+      + S+L+ +VLDEAD +LD+GF D +  I+++ P+KR+ L+FSAT + 
Sbjct: 196 GRLLQHMDETTYFHASNLQMLVLDEADRILDMGFADTMNAIIENLPRKRQTLLFSATQTK 255

Query: 192 AITTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           ++  LA+   KD   V V+  ++    + ++   ++  L  + N + + LR H  K +IV
Sbjct: 256 SVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQQKINMLYSFLRSHLKKKSIV 315

Query: 250 FCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           F S+   V    +V         ++AL G+  Q +R          ++ V  ATD+AARG
Sbjct: 316 FFSSCKEVQYLFRVFCRLRPGLSILALHGKQQQMKRMEVYNDFVRKKSAVLFATDIAARG 375

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +D P +  V+  +   +    +HR+GRT R    G ++ V+
Sbjct: 376 LDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGEALLVL 416


>gi|319955577|ref|YP_004166844.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424237|gb|ADV51346.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 449

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 184/359 (51%), Gaps = 26/359 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ + +  A+ +  +   T +QEA  +  +  KD++  AQTG+GKT+A+ L +
Sbjct: 1   MSSFEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +      FS    P  L + PTREL +QV   +E       + V    GG +++ ++
Sbjct: 61  LQEI-----TFSKQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +    G  I+V TPGRL D    K + +  +K +V+DE D MLDLGFR  +  + D  P 
Sbjct: 116 QQCAQGTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPA 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAI 235
           +R+ +MFSAT++  +  L  ++     +V+IA       +I  + V  A+ +   + N +
Sbjct: 176 RRQNIMFSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNI--KQVCYAVPNFYTKINLL 233

Query: 236 VNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE-------LSQQERSNAL 287
           + +L+     +  +VF S +    RF   + E +   VA   E        +Q  R  ++
Sbjct: 234 IRLLKDKDTYQKVLVFVSNK----RFADKVFEEM--EVAFGNESCVIHSNKTQNYRMRSI 287

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +   +G+ R+ + TDV ARG+DL  +  VI+ +  + PEN +HR GR+GRA  +G SV 
Sbjct: 288 RQFDEGKNRILVTTDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVL 346


>gi|260592378|ref|ZP_05857836.1| ATP-independent RNA helicase DbpA [Prevotella veroralis F0319]
 gi|260535672|gb|EEX18289.1| ATP-independent RNA helicase DbpA [Prevotella veroralis F0319]
          Length = 438

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 183/363 (50%), Gaps = 34/363 (9%)

Query: 25  SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84
           + +EA+L      KDV+V + TGSGKT A+ L L   L A +D         A+ + P R
Sbjct: 20  ATEEAVL---YTGKDVVVMSPTGSGKTYAYLLPLIQRLDAISDELQ------AVVLLPGR 70

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           ELA+Q    L+ +   +G+      GG   +  HR  RD++    IV  TPGRL DH+  
Sbjct: 71  ELALQSAMVLKDM--GSGLRAMALYGGRPTMDEHRVLRDVK--PQIVFVTPGRLNDHLDK 126

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS---PAITTLAK 198
           K LN   +K +V+DE D+ L+LGF+ ++  IL+  P   R ++ SAT S   PA  ++ +
Sbjct: 127 KNLNAETIKWLVIDEFDKCLELGFQGEMMSILNKLPNIERRILLSATESESIPAFVSMGR 186

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
               D    +    +R H       V     D+ +++  +L   G ++ IVF + R SV 
Sbjct: 187 TIYLDYRTDDDNIPDRVH----LYTVTSPEKDKLDSLKRLLLSLGNESTIVFLNYRESVE 242

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           R    L E+ F V    G L Q ER  AL    +G   + I+TD+A+RG+D+PD++ +IH
Sbjct: 243 RVATFLKENGFMVSCYHGGLEQDEREAALYRFSNGSVSILISTDLASRGLDIPDVDNIIH 302

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFV------IPQNMQRRAERLFREANVSVVWEPA 372
             +    +N +HR GRT R  ++G + F+      +P+ + +  E      N+     P 
Sbjct: 303 YHIPETEDNYIHRVGRTARWDKEGRTFFILGPGETLPEYVSKENEEFQLPTNL-----PK 357

Query: 373 PSV 375
           P++
Sbjct: 358 PTL 360


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 181/363 (49%), Gaps = 11/363 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E + +  Y    ++Q   L   +  +D +  A+TGSGKT+AF L +   +  +     
Sbjct: 483 ILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVE 541

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  +++       +      GG  V ++  +L+ G  IVV 
Sbjct: 542 AGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVC 601

Query: 131 TPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +   G  I++L+ V   V+DEAD M D+GF   I  I+ +    R+ ++FSA
Sbjct: 602 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 661

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHG 243
           T    + TLA+      V + +   +  + DI     LV L   D   + +L     ++ 
Sbjct: 662 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDI---TQLVELRTEDQRWLRLLELLGEWYQ 718

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  ++       + L +  +  ++L G   Q +R + +   +     + IAT V
Sbjct: 719 KGKILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSV 778

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ DLELVI+ +  ++ E+ +HR GRTGRAGRKG ++  I ++  R A  L +  
Sbjct: 779 AARGLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKAL 838

Query: 364 NVS 366
            +S
Sbjct: 839 ELS 841


>gi|194380272|dbj|BAG63903.1| unnamed protein product [Homo sapiens]
          Length = 722

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 189/394 (47%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 110 PHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMES 169

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +
Sbjct: 170 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGIN 229

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 230 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQN 289

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-----------------IDYRAVL 225
           ++ SAT++  +T LA     D V +++  ++    +                 +D  A+ 
Sbjct: 290 VLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIP 349

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASV----SRFTKVL---- 264
            +L      + + LR             +   +  +VF S+   V    S F + L    
Sbjct: 350 ESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSS 409

Query: 265 ----------AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                     A    + + L G + Q+ER+   Q     R  V + TDVAARG+DLP + 
Sbjct: 410 GAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVT 469

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     S+P   +HR GRT R G  G S+ ++
Sbjct: 470 WIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLIL 503


>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
 gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
          Length = 638

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 109/340 (32%), Positives = 181/340 (53%), Gaps = 16/340 (4%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +Q   +   L  KD++  A TGSGKT AF + +   L +   R +  +    + + PT
Sbjct: 101 TPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIPIMERL-SYRQRSADDAKSRVVVLCPT 159

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+Q     + L     V   +C+GG+S+  +  +L+    +++ TPGRL DH+R   
Sbjct: 160 RELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQEAELKTRPDVIIATPGRLIDHVRNSA 219

Query: 144 -LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
              +  ++ +V+DEAD ML+ GF D++  I+   PK+R+ ++FSAT++  +  L +   +
Sbjct: 220 SFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCPKQRQTMLFSATMTEDVDQLVRLSLR 279

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGAKNAIVFC--STRASVS 258
             VR+ +  +    S +    V V    R   +A       H A   +  C  + R  V 
Sbjct: 280 TPVRLFVDPKRSTASKLTQEFVRVRAQSRLTGHARQQAEDQHRAAILVTLCMRTFRDQVI 339

Query: 259 RF--TKVLAEHL---FQVVALS-----GELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            F  +K LA  L   F ++ LS     G+LSQ++R  +L + RDG+    +ATD+A+RGI
Sbjct: 340 IFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQSLSLFRDGKVDFLLATDLASRGI 399

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+  ++ VI+ ++ +  E  LHR GRT RAGR+G +V ++
Sbjct: 400 DIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRAVTLV 439


>gi|56785882|gb|AAW29073.1| DEAD box helicase Vasa1 [Nematostella vectensis]
          Length = 279

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/279 (35%), Positives = 155/279 (55%), Gaps = 6/279 (2%)

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
           A+ L + ++L+ +    +P  +PLAL +APTRELA Q+  E       T + V VC GGV
Sbjct: 1   AYMLPVLTSLIKQGLN-APPRSPLALCVAPTRELAKQIYIEARKFSDHTPIKVCVCYGGV 59

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           SV  +   L+ G H +VGTPGRL D +  + + +  ++ ++LDEAD MLDLGF  DI  +
Sbjct: 60  SVPYQASQLERGCHFLVGTPGRLQDFVSREKIYLGSIQHLILDEADRMLDLGFGPDIHKL 119

Query: 173 LDSS----PKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVA 227
           ++ S     + R+ LMFSAT    I  LA ++ K D + + +      + DI    + V 
Sbjct: 120 IEESNMTAKESRQTLMFSATFPDEIQHLAGSFLKPDYLFLAVGRVGGTNLDITQHVITVN 179

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++ + +  IL   G    +VF   +         L+++ F   ++S +  Q ER  AL
Sbjct: 180 GSEKRDKLHEILSATGTDRTLVFVELKRVADFLAAWLSQNNFPTTSISSDRCQSEREAAL 239

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
           +  RDGRA + +AT VAARG+D+P+++ VI+ +L  + E
Sbjct: 240 RDFRDGRANILVATSVAARGLDIPNVKHVINYDLPQDIE 278


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 202 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 260

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 261 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 320

Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ +   +R+ ++FSA
Sbjct: 321 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 380

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T    + TLA+      V + +   +  + DI     +   SDR   ++ +L  ++    
Sbjct: 381 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFFRLLELLGEWYEKGK 440

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  ++       + + +  +  ++L G   Q +R + +   +     + IAT VAAR
Sbjct: 441 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNVCNLLIATSVAAR 500

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S
Sbjct: 501 GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS 560

Query: 367 VVWEPAP 373
              +P P
Sbjct: 561 --EQPVP 565


>gi|195155470|ref|XP_002018627.1| GL25900 [Drosophila persimilis]
 gi|194114780|gb|EDW36823.1| GL25900 [Drosophila persimilis]
          Length = 403

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 178/344 (51%), Gaps = 35/344 (10%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA--SAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQN 123
              PA  +    L +  TRELA Q+ +E E    Y  T V VAV  GG+++ ++   L++
Sbjct: 104 --EPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPT-VKVAVFFGGLAIQKDEETLKS 160

Query: 124 GA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
           G  HIVVGTPGR+   IR K LN+ HLK  VLDE D+ML+ L  R D++ I  SSP  ++
Sbjct: 161 GTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMRRDVQEIFRSSPHGKQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT+S  I  + K + +D + V +  E +           + L       VN+   
Sbjct: 221 VMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAK-----------LTLHGLQQHYVNL--K 267

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KN  +F      V  F +      F  + +   ++Q+ER N  Q  +D + R+ +AT
Sbjct: 268 ENEKNKKLF--ELLDVLEFNQN-----FPAIGIHRGMTQEERLNRYQQFKDFQKRILVAT 320

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ++  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 321 NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 364


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 174/343 (50%), Gaps = 15/343 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   L   +  +DV+  A+TGSGKTVAF L +   +  +         P+ L
Sbjct: 616 GYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHI-KDQPPLKDTDGPIGL 674

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQ+ ++ +      G+      GG  +  +  +L+ GA I+V TPGR+ D 
Sbjct: 675 IMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDL 734

Query: 139 I---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           +   +G+  N+  +  VVLDEAD M D+GF   +  I  +    R+ ++FSAT+   I +
Sbjct: 735 LAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATMPRIIDS 794

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-------KNAI 248
           L K   K+ + V +   +    +I+    +V + D  +    +L   G           +
Sbjct: 795 LTKKVLKNPIEVTVGGRSVVAKEIEQ---IVEVRDEPSKFHRVLELLGELYDRDEDARTL 851

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +       K L    +  +++ G   Q +R + +   + G   + IAT VAARG+
Sbjct: 852 IFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVAARGL 911

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G++V FV P+
Sbjct: 912 DVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPE 954


>gi|237841393|ref|XP_002369994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967658|gb|EEB02854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1544

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 183/360 (50%), Gaps = 11/360 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
            +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L   +L+ +
Sbjct: 980  LPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRHVLSVK 1039

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               F   +  +AL IAPTREL  Q+ +E+        +    C GG  +  +   ++ G 
Sbjct: 1040 QQDFRDGA--IALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKRGV 1097

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             ++VGTPGRL D +   G  ++ LK V   VLDEAD M D GF   +  I+ SS   R+ 
Sbjct: 1098 EVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPDRQT 1157

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--- 239
             +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ +L   
Sbjct: 1158 CLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            + HG+   I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   + I
Sbjct: 1218 QEHGS--VIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRTLLI 1275

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A+ L
Sbjct: 1276 ATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKADDL 1335


>gi|17507879|ref|NP_491876.1| Germ-Line Helicase family member (glh-2) [Caenorhabditis elegans]
 gi|51316069|sp|Q966L9|GLH2_CAEEL RecName: Full=ATP-dependent RNA helicase glh-2; AltName:
           Full=Germline helicase 2
 gi|14573988|gb|AAK68269.1|AC006625_1 Germ line helicase protein 2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 974

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 37/381 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + + L+ E
Sbjct: 558 NLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDE 617

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ND  +       P  + + PTREL  Q+  E      +T + +    GG++V   +  ++
Sbjct: 618 NDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIE 677

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILD--SSPKK 179
            GA I+VGT GR+        + +   +  VLDEAD M+D +GF  DI+ I++  S PKK
Sbjct: 678 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKK 737

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVAL----- 228
             R+ LMFSAT   ++   A+N+ K+   +     I + N+         VL        
Sbjct: 738 ENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANK--------CVLQEFEKCDR 789

Query: 229 SDRDNAIVNIL-----RYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           S++ + ++ IL      Y   KN+       IVF S RA       +L+      + + G
Sbjct: 790 SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTG
Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 909

Query: 337 RAGRKGMSVFVIPQNMQRRAE 357
           R G  G +   I ++    +E
Sbjct: 910 RVGNAGRATSFISEDCNLLSE 930


>gi|221482438|gb|EEE20786.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1544

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 183/360 (50%), Gaps = 11/360 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
            +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L   +L+ +
Sbjct: 980  LPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIRHVLSVK 1039

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               F   +  +AL IAPTREL  Q+ +E+        +    C GG  +  +   ++ G 
Sbjct: 1040 QQDFRDGA--IALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGAIKRGV 1097

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAV---VLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             ++VGTPGRL D +   G  ++ LK V   VLDEAD M D GF   +  I+ SS   R+ 
Sbjct: 1098 EVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSRPDRQT 1157

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--- 239
             +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ +L   
Sbjct: 1158 CLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQLLGEW 1217

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            + HG+   I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   + I
Sbjct: 1218 QEHGS--VIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRTLLI 1275

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A+ L
Sbjct: 1276 ATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKADDL 1335


>gi|114643641|ref|XP_520752.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 4 [Pan
           troglodytes]
          Length = 406

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+                    A+S +   +  +
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVK-------------------CAVSSKYQTVEKL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +Y+      +F       S+F                   + +R  +L   +     + 
Sbjct: 239 QQYY------IFIP-----SKF-------------------KSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|143456026|sp|Q0E2Z7|RH41_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 41
 gi|46390396|dbj|BAD15860.1| putative DEAD box [Oryza sativa Japonica Group]
 gi|215701515|dbj|BAG92939.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767715|dbj|BAG99943.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 536

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 190/362 (52%), Gaps = 13/362 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL-ASTLLAE 65
           +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + A      
Sbjct: 144 LPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVR 203

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++NG 
Sbjct: 204 SERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGI 263

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD--SSPKKRRML 183
            ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I    S P+   ++
Sbjct: 264 ELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQ---VM 320

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RY 241
           MFSAT++  +  ++ +  K+A+ ++  + +R +  +    + V    +   I  I+  + 
Sbjct: 321 MFSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQ 380

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           H    A+VF S+R      ++ +      +VV++ G+ +  ER  +L+    G   V + 
Sbjct: 381 HFKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVC 440

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  +  N + R   LF
Sbjct: 441 TGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFV--NEEDR--NLF 496

Query: 361 RE 362
           RE
Sbjct: 497 RE 498


>gi|47206275|emb|CAF95815.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 168/325 (51%), Gaps = 22/325 (6%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +     P  A    A
Sbjct: 160 YTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTD----GPGDA--LQA 213

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I  + + A            ++ V   V  GG  + ++ RDL+ G H++V TPGRL D +
Sbjct: 214 IKSSGQFAY-----------RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM 262

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPKK--RRMLMFSATISPAITT 195
               + + +   +VLDEAD MLD+GF   I  I+  D+ P K  R+ +MFSAT    I  
Sbjct: 263 ERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQI 322

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTR 254
           LA+++ +D + + +        +I  + V V   D+ + ++++L   G  +  +VF  T+
Sbjct: 323 LARDFLEDYIFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETK 382

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                    L    +   ++ G+ SQ++R  AL   R GR  + +AT VAARG+D+ +++
Sbjct: 383 KGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVK 442

Query: 315 LVIHAELSSNPENLLHRSGRTGRAG 339
            VI+ +L S+ E  +HR GRTGR G
Sbjct: 443 HVINFDLPSDIEEYVHRIGRTGRVG 467


>gi|17977678|ref|NP_524220.1| abstrakt [Drosophila melanogaster]
 gi|12643521|sp|Q9V3C0|DDX41_DROME RecName: Full=ATP-dependent RNA helicase abstrakt; Short=DEAD box
           protein abstrakt
 gi|6635811|gb|AAF19985.1|AF212866_1 abstrakt protein [Drosophila melanogaster]
 gi|7296891|gb|AAF52165.1| abstrakt [Drosophila melanogaster]
 gi|15291815|gb|AAK93176.1| LD28839p [Drosophila melanogaster]
 gi|220945834|gb|ACL85460.1| abs-PA [synthetic construct]
 gi|220955594|gb|ACL90340.1| abs-PA [synthetic construct]
          Length = 619

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 179/357 (50%), Gaps = 11/357 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I   L+ +G  N T +Q   L   L  +D++  A TGSGKT+ F L +    L + 
Sbjct: 184 FPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQE 243

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHRE 117
               F     P  L I P+RELA Q   E+   Y+K         +   + +GG+ V   
Sbjct: 244 YSLPFERNEGPYGLIICPSRELAKQT-HEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEA 302

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +  G HIVV TPGRL D +  K L +   + + +DEAD M+D+GF +D+  I     
Sbjct: 303 LDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK 362

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++     V +N+        ++  +   V    +   +++
Sbjct: 363 GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLD 422

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+   A   ++F   +  V    + L     + VA+ G   Q+ERS A+   R G+  V
Sbjct: 423 CLQ-KTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDV 481

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+  KG++  +I +  ++
Sbjct: 482 LVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQ 538


>gi|6118254|gb|AAF04040.1|AF187729_1 DEAD-box protein abstrakt [Drosophila melanogaster]
          Length = 614

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 179/357 (50%), Gaps = 11/357 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ I   L+ +G  N T +Q   L   L  +D++  A TGSGKT+ F L +    L + 
Sbjct: 179 FPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQE 238

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHRE 117
               F     P  L I P+RELA Q   E+   Y+K         +   + +GG+ V   
Sbjct: 239 YSLPFERNEGPYGLIICPSRELAKQT-HEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEA 297

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +  G HIVV TPGRL D +  K L +   + + +DEAD M+D+GF +D+  I     
Sbjct: 298 LDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTIFSFFK 357

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   A++     V +N+        ++  +   V    +   +++
Sbjct: 358 GQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKVVYLLD 417

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+   A   ++F   +  V    + L     + VA+ G   Q+ERS A+   R G+  V
Sbjct: 418 CLQ-KTAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRVGKKDV 476

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+  KG++  +I +  ++
Sbjct: 477 LVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTTEQ 533


>gi|195572770|ref|XP_002104368.1| pit [Drosophila simulans]
 gi|194200295|gb|EDX13871.1| pit [Drosophila simulans]
          Length = 918

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 186/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 201 AIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 258

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 259 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 318

Query: 134 RLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 319 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 378

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 379 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 437

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 438 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 497

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +P   +HR GRT + +G  G ++ ++
Sbjct: 498 DIPQVDWIVQYDPPDDPREYIHRVGRTAKGSGTSGHALLLM 538


>gi|123468960|ref|XP_001317695.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900435|gb|EAY05472.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 389

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 187/339 (55%), Gaps = 14/339 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I EA+ + G+   + +Q+  +    + K+++  +Q GSGKT  F +   + L     
Sbjct: 29  PELI-EAIKKNGWEKPSPIQQRAIYIISQGKNIMFQSQNGSGKTATFSIGTLARL----- 82

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           R +  +  L + ++PTRELA+Q    L+ L A T      C+GG S+  + + LQ G H 
Sbjct: 83  RLTSKTTELII-VSPTRELAIQTENTLKSLGANT----RACVGGNSLGADVKALQKGIHC 137

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V GTPGR+   ++   +    +++VVLDEADEML   F+  I  IL   P  +++++ +A
Sbjct: 138 VSGTPGRILQLLKEHNIQAEKVQSVVLDEADEMLT-SFKSTIMDILQKLPHAQKVIV-TA 195

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKN 246
           T+S  +  LA  + +++V + +  +    + ID   V V   + + + +++I +    + 
Sbjct: 196 TVSADVVELATAHLRNSVEIRVPRDELTLTGIDQYVVRVENEEWKFDTLIDIYQSIAIEK 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F ++    +     + +  F V  + G+++  +R+   +  R G ARV IATDV +R
Sbjct: 256 AVIFVNSVEKGNWLKGKMVDSGFTVALVHGQMTMDDRAKITEEFRSGEARVLIATDVFSR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           GID+ ++ LVI+ + +   +  LHR GR+GR GRKG+++
Sbjct: 316 GIDVRNVTLVINFDFALTCDVYLHRIGRSGRFGRKGLAI 354


>gi|41327776|ref|NP_957518.1| probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens]
 gi|119616689|gb|EAW96283.1| hCG27698, isoform CRA_c [Homo sapiens]
          Length = 406

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+                    A+S +   +  +
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVK-------------------CAVSSKYQTVEKL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +Y+      +F       S+F                   + +R  +L   +     + 
Sbjct: 239 QQYY------IFIP-----SKF-------------------KSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|157115837|ref|XP_001658306.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|94468806|gb|ABF18252.1| ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883476|gb|EAT47701.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 423

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 180/343 (52%), Gaps = 13/343 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
              P  + P  L +  TRELA Q+ +E E +      + VAV  GG+ + ++   L++  
Sbjct: 104 --EPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTN 161

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HI+VGTPGR+   IR K LN+ HLK  +LDE D+ML+ L  R D++ I  ++P  ++++
Sbjct: 162 PHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVM 221

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 222 MFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVL 281

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   + Q+ER +  Q  +D + R+ +AT+
Sbjct: 282 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVATN 341

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 342 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 384


>gi|71665086|ref|XP_819517.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884821|gb|EAN97666.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 608

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 194/367 (52%), Gaps = 10/367 (2%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++    ++  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +     
Sbjct: 122 PHIVTALENDFKFGELTGIQGRCVPAALSGRDLLAEAKTGSGKTLAFLIPIVEIISRAGF 181

Query: 68  RFSPASAPLALAIAPTRELAVQV-GRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
           R    +A  A+ I PTREL +Q+ G  L+ L    G +    CIGG S ++E   L NG 
Sbjct: 182 RAKNGTA--AVIIGPTRELCLQIEGVLLKLLKHFNGSITFLCCIGGQSRNQEAFKLVNGM 239

Query: 126 HIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ +PGRL DH++        +L  + +DEAD +LD GF +D+  I+   PKKR+  +
Sbjct: 240 MIVIASPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEEDMREIVSLLPKKRQTFL 299

Query: 185 FSATISPAITTLAK-NYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+ ++ +  + +++     + +   ++   V+     R   + + ++ 
Sbjct: 300 FSATQTTRVEQLARISFYRPPLLISMKRREEKATVDTLEQGYVMCPSEQRLLVLYHFVKR 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V   T
Sbjct: 360 NLKKKMIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLFTT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++ F++PQ  +   + L+
Sbjct: 420 DVAARGLDIPHVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQE-KLFLKYLY 478

Query: 361 REANVSV 367
            +A+V+V
Sbjct: 479 DDAHVTV 485


>gi|322784405|gb|EFZ11376.1| hypothetical protein SINV_10914 [Solenopsis invicta]
          Length = 626

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 9/343 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71
            L ++G V  T +Q   +   L  +D++  A TGSGKT+ F L +    L +  +  F  
Sbjct: 199 GLEQKGIVKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEFCLEQEIDMPFIK 258

Query: 72  ASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVC---IGGVSVHRERRDLQNGA 125
              P  L I P+RELA Q   + R       +T      C   IGGV V      +  G 
Sbjct: 259 KEGPYGLIICPSRELAKQTFDIIRHYTNSIRQTDCPEIRCCLAIGGVPVSESLAVINKGV 318

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+  I      +R+ L+F
Sbjct: 319 HIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIFSFFRGQRQTLLF 378

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I   A++     V +N+        ++      V    +   ++  L+   A 
Sbjct: 379 SATMPKRIQNFARSALVKPVTINVGRAGAASMNVVQEVEYVKQEAKIVYLLECLQ-KTAP 437

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F   +  V    + L     + VA+ G + Q+ERS +++  R GR  V +ATDVA+
Sbjct: 438 PVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRAGRKDVLVATDVAS 497

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +G+D  +++ VI+ ++  + EN +HR GRTGR+GR G++   I
Sbjct: 498 KGLDFAEVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFI 540


>gi|34784845|gb|AAH56735.1| Si:ch211-89p1.3 protein [Danio rerio]
          Length = 673

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 185/371 (49%), Gaps = 43/371 (11%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   +  KD +V +QTGSGKT+A+G+ +   L A   +   +  PLA+ I 
Sbjct: 111 SMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQFLQAIQPKVKRSDGPLAVVIV 170

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q  +  + L    T +V  V +GG     E+  L+ G ++++ TPGRL DHI+
Sbjct: 171 PTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPGRLVDHIK 230

Query: 141 GK-GLNISHLKAVVLDEADEMLDLGFRDDIEFI---LDSSPKKRRMLMFSATISPAITTL 196
               +  S ++ ++LDEAD +LDLGF  D+  I   L+++   R+ ++ SATI+  ++ L
Sbjct: 231 NTLSIAFSAVRWLILDEADRILDLGFEKDLTVILNALNTAGPDRQNVLLSATITEGLSRL 290

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---------------------- 234
           A    KD V V+++  + +  +   +A   ALSD                          
Sbjct: 291 ASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVVVPSKLHLVCLAA 350

Query: 235 -IVNILRYHGAKNAIVFCSTRASV----SRFTKVLAE----------HLFQVVALSGELS 279
            I+   ++   +  ++F S+  +V    + FT VL E                 L G + 
Sbjct: 351 FILAKCKFEQRQKLVIFISSCEAVEFLLNLFTAVLCEIPSNTSSKSTSCLNFYRLHGNMR 410

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER+   Q     +  + + TDVAARG+DLP +  ++      +    +HR GRT R G
Sbjct: 411 QEERTEVFQEFSQCKTGILLCTDVAARGLDLPQVTWIVQYNPPVSAAEYVHRVGRTARIG 470

Query: 340 RKGMS-VFVIP 349
            +G S +F+ P
Sbjct: 471 AQGSSLLFLTP 481


>gi|119608414|gb|EAW88008.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31, isoform CRA_c [Homo
           sapiens]
          Length = 851

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 372

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 492

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 493 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 612

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 613 IHRIGRTARIGCHGSSLLIL 632


>gi|322487819|emb|CBZ23061.1| unnamed protein product [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 456

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 171/333 (51%), Gaps = 13/333 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L   
Sbjct: 81  FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 140

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQ----VGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   ++          L ++PTRELA+Q    + R  E+L + +       +GG  V  +
Sbjct: 141 LDFRHNLIQ------GLVLSPTRELALQTAEVISRIGEFL-SNSSKFCETFVGGTRVQDD 193

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G  + VGTPGR+ D I+   L    L+ +VLDEADEML  GF D I  I    P
Sbjct: 194 LRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP 253

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++ +FSAT+   +  L K + +D VR+ +  E+     I    + V    + + +++
Sbjct: 254 KDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 313

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V ++  E+ + +R   +   R G +RV
Sbjct: 314 LYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRV 373

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            + TD+ ARGID+  + +VI+ +L +N EN LH
Sbjct: 374 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 406


>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
          Length = 624

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 173/344 (50%), Gaps = 11/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE--NDRFSP 71
            L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +    L +  +  F  
Sbjct: 197 GLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPIIEFCLEQELDMPFIK 256

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDLQNG 124
              P  L I P+RELA Q   ++   Y  +        +   + IGGV V      +  G
Sbjct: 257 KEGPYGLIICPSRELAKQT-YDIIRHYTNSLRQADCPEIRSCLAIGGVPVSESLVIINKG 315

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+  I      +R+ L+
Sbjct: 316 VHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVRTIFSFFRGQRQTLL 375

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I   A++     V +N+        ++      V    +   ++  L+   A
Sbjct: 376 FSATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEAKIVYLLECLQ-KTA 434

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +  V    + L     + VA+ G + Q+ERS +++  R GR  V +ATDVA
Sbjct: 435 PPVLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAFRGGRKDVLVATDVA 494

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I
Sbjct: 495 SKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFI 538


>gi|224092470|ref|XP_002309623.1| predicted protein [Populus trichocarpa]
 gi|222855599|gb|EEE93146.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L   STL     +  P S
Sbjct: 61  SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL---STL----QQIEPTS 113

Query: 74  AP-LALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
              +AL +  TRELA Q+  E E          VAV  GGV++   +  L+N   HIVVG
Sbjct: 114 GQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVG 173

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 174 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 233

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +   L  L +++  + ++L        
Sbjct: 234 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEL-EKNRKLNDLLDALDFNQV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD+  RG
Sbjct: 293 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 353 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 390


>gi|195453216|ref|XP_002073690.1| GK14240 [Drosophila willistoni]
 gi|194169775|gb|EDW84676.1| GK14240 [Drosophila willistoni]
          Length = 663

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 187/342 (54%), Gaps = 9/342 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + + E G+  +T +Q   + P L+ +D++ +AQTGSGKT+AF   + +  L    RF P 
Sbjct: 185 QGIQEMGFTEMTEIQSKSITPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPR 242

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TP
Sbjct: 243 NGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATP 302

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++        +L+ +++DE D +L++GF ++++ I++  P +R+ ++FSAT + 
Sbjct: 303 GRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPTRRQTMLFSATQTA 362

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            I  L+K   +K+ + V +  +N  ++ ++   +  +V  S+ R   +   L+ +  K  
Sbjct: 363 RIDALSKLALKKEPIYVGV-HDNEANATVEGLEQGYIVCPSEKRLLVLFTFLKKNRKKKV 421

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG
Sbjct: 422 MVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARG 481

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           +D+P ++ ++  +   +P   +HR GRT R +G+ G ++ ++
Sbjct: 482 LDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGQSGHALLLM 523


>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
 gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 411

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 12/342 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     L+    R+   
Sbjct: 17  ESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYGGR 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +  L L   PTRELA Q+ R    L    G+   +  GGV    +   LQ    I+V TP
Sbjct: 77  ARVLILT--PTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEALQKNVDILVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     N   ++ +++DEAD MLD+GF   +E I   S  +++ ++FSAT+  +
Sbjct: 135 GRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESIAIESVGRKQTMLFSATLEGS 194

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-----IVNILRYHGAKN 246
            +   + N   + V++   +   + + I      + L+D D A     +  +L+    + 
Sbjct: 195 DVGRFSHNLLTNPVKLEAEAPRSEKAKIHQ---WIHLAD-DKAHKFALLCALLKQEEVQR 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  TR SV+    +L +       + G++ Q+ R  AL     G   + +ATDVAAR
Sbjct: 251 TIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILLATDVAAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           GID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++
Sbjct: 311 GIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLV 352


>gi|116494578|ref|YP_806312.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104728|gb|ABJ69870.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 428

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A+  P   ++DV+  A TGSGKT+AFGL L   ++       P      L
Sbjct: 15  GYTEQTPIQTAVYQPLKADEDVVGLAPTGSGKTLAFGLPLLEKMV-------PGDGLQLL 67

Query: 79  AIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +AP++ELA+Q  R++   YAK  G+ V   IG  +V R+   L+    +VV T GRL +
Sbjct: 68  ILAPSQELAIQT-RDVLTPYAKDIGITVQGVIGSANVKRQLDRLKEKPEVVVATAGRLLE 126

Query: 138 HIRGKGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
            I+ + L +  L+ +V+DEADEML D GF D +  I  ++P + ++  FSAT SP    L
Sbjct: 127 LIQSRKLKLDGLQTLVVDEADEMLRDPGF-DQVREIAAAAPAEAQLAFFSATPSPYFKEL 185

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFCSTR 254
            K + K    +++ + +R   ++ +   L   +DR + +  +  L +     A+VF +  
Sbjct: 186 HKWFGKTPDIIDVRAIDRTRGEVRH---LFLQTDRAHQVDWLRTLAHTDGFKALVFFNQN 242

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           +S+ R   +L     +   LS E  Q  R  AL   R GR  + + TD+A RG+D+P L 
Sbjct: 243 SSLERVAGILRHQAVRFAVLSREGRQTVRQKALTDFRRGRITLLLVTDMAGRGLDIPKLP 302

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V++ E     E  +HR+GRTGR G  G+ V
Sbjct: 303 AVVNFEPPKRAEVYIHRAGRTGRMGEAGLVV 333


>gi|17505907|ref|NP_073616.6| probable ATP-dependent RNA helicase DDX31 isoform 1 [Homo sapiens]
 gi|71153334|sp|Q9H8H2|DDX31_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX31; AltName:
           Full=DEAD box protein 31; AltName: Full=Helicain
 gi|16566550|gb|AAL26549.1|AF427339_1 DEAD/DEXH helicase DDX31 [Homo sapiens]
 gi|55662100|emb|CAH70531.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Homo sapiens]
 gi|55958520|emb|CAI16564.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Homo sapiens]
          Length = 851

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 372

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 492

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 493 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 612

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 613 IHRIGRTARIGCHGSSLLIL 632


>gi|71030844|ref|XP_765064.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352020|gb|EAN32781.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 648

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 22/347 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS-- 70
           + L  +GYV LT VQ  +L   L  K++++ + TGSGKT+ F L     L  E   +S  
Sbjct: 29  KVLKSKGYVYLTKVQSKVLPLALSGKNLVIQSPTGSGKTLCFLLPTVKHLFDEG--YSGN 86

Query: 71  -PASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG--A 125
            P  A L   + +APTRELA Q+  +++ L     +    CIGGV   R++ D +N    
Sbjct: 87  LPIDANLLGCICLAPTRELASQIALQMKDLANPLKLNSGCCIGGV---RDKYDKKNANRL 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI+ GTPGR+   +  + L  +H +K +++DEAD ++D+GFRDDI  I+D  P   + L 
Sbjct: 144 HILTGTPGRILALLSSQSLPETHNIKILIMDEADRLIDVGFRDDIISIVDFLPTDIQFLF 203

Query: 185 FSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVALSD--RDNAIVNILR 240
           FSATI  ++  L     KD     V + S++   S+ + R  LV +S   + +A+  IL 
Sbjct: 204 FSATIKSSLKELCDLLLKDVSYELVCLGSDSDGISESNLRQELVLMSPKLKFSALFYILS 263

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS---GELSQQERSNALQMMRDGRARV 297
            +  K  IVF ST   + RF   + + L   V ++   G+ SQ +R          +   
Sbjct: 264 KNQNKRIIVFLST-CKLVRFAYEVFKRLIPAVPMTELHGKQSQNKRLTQFTRFAAKQNHG 322

Query: 298 CI-ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
           CI  TD+AARGID P +++V+  +L  +     HR GR GR   +G 
Sbjct: 323 CIFTTDLAARGIDFPAVDIVVQFDLPDSTTTYTHRVGRAGRLSVEGF 369


>gi|77736449|ref|NP_001029924.1| ATP-dependent RNA helicase DDX39 [Bos taurus]
 gi|59858465|gb|AAX09067.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 1 [Bos taurus]
 gi|296485978|gb|DAA28093.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Bos taurus]
          Length = 427

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 184/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    +   N + +   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVT--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|19115173|ref|NP_594261.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe 972h-]
 gi|59800426|sp|O13792|SUB2_SCHPO RecName: Full=ATP-dependent RNA helicase uap56
 gi|2408027|emb|CAB16225.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe]
          Length = 434

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 183/343 (53%), Gaps = 22/343 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L   STL     +  P  
Sbjct: 65  AITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVL---STL----QQIEPVD 117

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCIGGVSVHRER---RDLQNG 124
             ++ L +  TRELA Q+  E    YA+       V  AV  GG+++ ++    +D    
Sbjct: 118 GEVSVLVLCHTRELAFQIKNE----YARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKS 173

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HIVV TPGRL   +R K L ++ +K  VLDE D++L+ +  R DI+ +  ++P +++++
Sbjct: 174 PHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVM 233

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + ++ + + +  E +     +    V +    ++  I ++L   
Sbjct: 234 MFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSL 293

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   ++L E  F  + + G L Q+ER    +  +D   R+C+ATD
Sbjct: 294 EFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATD 353

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V  RGID+  + +VI+ ++  +P++ LHR GR GR G KG+++
Sbjct: 354 VFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAI 396


>gi|116618678|ref|YP_819049.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097525|gb|ABJ62676.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 454

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 181/343 (52%), Gaps = 9/343 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +ALS  G+   T+VQ  ++   L+ +DV+  +QTGSGKT  F + + + L  +
Sbjct: 12  NLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILNQLEQD 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
           N+         A+   P+RELA Q+ + ++    +  T + ++  +GG    R+ + L+N
Sbjct: 72  NEYVQ------AVITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQLEN 125

Query: 124 G-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D +    L +  +  +V+DEAD  LD+GF +++++I  + P+  + 
Sbjct: 126 HQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     D+++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTIDNWLLATKSKDKNDIIYQVLTIG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      +  L  H  +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKERAKEISSFLRGHGLKVAEIHGDIEPRERRRVMKAIQNLEYQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +AARGID+  +  VI+ ++ +  E  +HR GRTGR G  G+++
Sbjct: 306 LAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAI 348


>gi|224613200|gb|ACN60179.1| ATP-dependent RNA helicase DDX18 [Salmo salar]
          Length = 470

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 182/321 (56%), Gaps = 8/321 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   + P L  +D+L +A+TGSGKT+AF   + S  L    +F P +    + ++P
Sbjct: 1   MTEIQHKSIRPLLEGRDILAAAKTGSGKTLAF--LIPSIELIYKLKFMPRNGTGVVILSP 58

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA+Q    ++ L         + +GG +   E + L NG +I+V TPGRL DH++  
Sbjct: 59  TRELAMQTYGVMKELMTHHVHTFGLIMGGSNRTAEAQRLANGVNILVATPGRLLDHLQNT 118

Query: 143 -GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK-NY 200
            G    +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++FSAT +  +  LA+ + 
Sbjct: 119 AGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKRRQTMLFSATQTRKVEDLARISL 178

Query: 201 QKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASV 257
           +K+ + V +  +N+ ++ +D   +  +V  S+ R   +   L+ +  K  +VF S+  SV
Sbjct: 179 KKEPLYVGV-DDNKDNATVDGLEQGYVVCPSEKRFMLLFTFLKKNRKKKLMVFFSSCMSV 237

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               ++L      V+A+ G+  Q +R+       +  + + + TDVAARG+D+P+++ ++
Sbjct: 238 KFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIV 297

Query: 318 HAELSSNPENLLHRSGRTGRA 338
             +   +P+  +HR GRT R 
Sbjct: 298 QYDPPDDPKEYIHRVGRTARG 318


>gi|195432050|ref|XP_002064039.1| GK19923 [Drosophila willistoni]
 gi|194160124|gb|EDW75025.1| GK19923 [Drosophila willistoni]
          Length = 917

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/413 (31%), Positives = 188/413 (45%), Gaps = 81/413 (19%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           +LT+VQE  +   L  KDVLV +QTGSGKT+A+ L L   L A+  +       +AL I 
Sbjct: 284 DLTTVQEKAIPHILAGKDVLVRSQTGSGKTLAYALPLVEKLQAQVPKIKRTDGVMALVIV 343

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH-I 139
           PTREL +Q    L+ L    T +V    +GG S   E+  L+ G +I+VGTPGRL DH +
Sbjct: 344 PTRELVMQTYELLQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILVGTPGRLVDHLL 403

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---------RMLMFSATIS 190
                 ++ L+ +VLDEAD +L+LG+  D++ ++++  K+R         + L+ SAT++
Sbjct: 404 HTASFKLTSLQFLVLDEADRLLELGYERDVQQLVEAIDKQRAENEIVTKMQRLLLSATLT 463

Query: 191 PAITTLA------------------------KNYQKDAVRVNIASENRQHSDIDYRAVL- 225
             +  LA                          YQK+++   +  +       D   VL 
Sbjct: 464 TQVQQLAGLTLKEPLYIDNSDEAASLALNGKSGYQKESIEAQLGDDGLGEYQEDVTGVLS 523

Query: 226 -----------VALSDRDNAIVNILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLF 269
                      V    R  AI  +L    A +     AI+F ST   V+    +L E L 
Sbjct: 524 IPENLHLSYIVVPPKLRLVAISALLAKELAASPKQFKAIIFMSTTEMVNFHHDMLNEALT 583

Query: 270 QVV----------------------------ALSGELSQQERSNALQMMRDGRARVCIAT 301
           Q V                             L G ++Q ER       R+  + V +AT
Sbjct: 584 QRVLDEDDEKSDDDDDDNDEGRPLLQGLRFFKLHGSMTQTERQGVFHGFRECPSCVLLAT 643

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           DV  RGID+PD++LVI         + +HR GRT RAGRKG +V F+ P   Q
Sbjct: 644 DVVGRGIDVPDIKLVIQYTPPQTTADFVHRVGRTARAGRKGRAVLFLAPSEAQ 696


>gi|110800080|ref|YP_696204.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110674727|gb|ABG83714.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
          Length = 405

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 172/324 (53%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   L+ K+V+  A+TG+GKT+A+ L +   +    +         A+ ++PT
Sbjct: 26  TDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQ------AIILSPT 79

Query: 84  RELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            EL VQ+   L  L    G  +     +G  ++ R+   L+N  HI+VGT GR+ + I  
Sbjct: 80  HELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNKPHILVGTTGRILELINK 139

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +  + +K +V+DE D++LD     D++ ++ S P+  + L+FSAT++      A    
Sbjct: 140 KKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLIFSATMNEKALETADELI 199

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRF 260
             +  +   + N+ + +I++    V L D+ + +  ++   G  K  IVF +   +V   
Sbjct: 200 GTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGDEKKIIVFINNSYNVHNV 259

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV+ARG+D+     +++ +
Sbjct: 260 IQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDVSARGLDIKGATHIVNLD 319

Query: 321 LSSNPENLLHRSGRTGRAGRKGMS 344
           +  N +N LHR GR GRAG KG +
Sbjct: 320 IPMNSQNYLHRVGRVGRAGEKGFA 343


>gi|82706116|ref|XP_727247.1| ATP-dependent RNA helicase Has1 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23483000|gb|EAA18812.1| probable ATP-dependent RNA helicase has1 [Plasmodium yoelii yoelii]
          Length = 649

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 174/344 (50%), Gaps = 3/344 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   + + L E  ++ LT +Q   +   L  KD+L +A+TGSGKT+AF   + S  +  
Sbjct: 233 DICDALKKGLKELNFITLTEIQSKCIPHFLNGKDILGAAKTGSGKTLAF--LVPSIHILY 290

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +F P +    L I+PTREL +Q+ +    L         + IGGVS + E++   +G 
Sbjct: 291 NIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKFIHGI 350

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++ TPGRL DH++  K  N  +L  +++DEAD +L +GF ++I  I+   PKKR+  +
Sbjct: 351 NILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKRQTAL 410

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  + +L +   +  + + + ++      +     LV    R   +   L+ + +
Sbjct: 411 FSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLKRNTS 470

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF +   SV  +  +L         + G+  Q +R  +       +  + + T+VA
Sbjct: 471 KKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAILLCTNVA 530

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ARG+D+P++  +I  +   + +  +HR GRT R      S  + 
Sbjct: 531 ARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIF 574


>gi|289619153|emb|CBI54421.1| unnamed protein product [Sordaria macrospora]
          Length = 694

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 176/359 (49%), Gaps = 25/359 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +AL+  GY N+T VQE +LN     +D LV A+TG+GKT+AF L    TLL   D   P+
Sbjct: 113 KALNTMGYANMTPVQEKVLNMGSFTQDCLVQAKTGTGKTIAFLLPALHTLLNAKD-LDPS 171

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGG-VSVHRERRDLQNGAHIVV 129
              L L +APTRELA Q+  E E L ++        + +GG        + L+    I+V
Sbjct: 172 QVAL-LILAPTRELAQQIVDECEKLVSQCNPRFECHLAVGGSAKASSLSKFLRGKPTILV 230

Query: 130 GTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM----L 183
            TPGRL D++  + +    ++L+ +VLDEAD MLD GF   +  IL S PKK++     +
Sbjct: 231 ATPGRLDDYLSDERVRQKFNNLRCLVLDEADCMLDQGFLPALTKILTSLPKKQQAGWQGM 290

Query: 184 MFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            FSAT+ P I   L          +    EN   +        + +   D+ I  + +  
Sbjct: 291 CFSATLPPTIHKVLHHVLAPKHAHITTVDENEAPTINSVPQSYMKVDSVDDVIPTLHKLL 350

Query: 243 GAK-------NAIVFCSTRASVSRFTKVL------AEHLFQVVALSGELSQQERSNALQM 289
            A+        A+VFCST    +    +       A     V  +   ++Q +R+   + 
Sbjct: 351 SAERFDNPKLKAVVFCSTARQAALLYTLFGHTGGAAPAKLPVWQMQSRMNQAQRTRTTEE 410

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +   + +  A+DV  RG+D PD+ LVI   +  N E  +HR GRTGRAG+ G +V ++
Sbjct: 411 FKSTESGILFASDVVGRGLDFPDIHLVIQVGIPLNSEQYVHRVGRTGRAGKGGRAVMIV 469


>gi|294889264|ref|XP_002772733.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
 gi|239877266|gb|EER04549.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
          Length = 622

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 177/371 (47%), Gaps = 32/371 (8%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I E +   G+   T VQ+  +      +D++  AQTGSGKT A+ +     +LA+    
Sbjct: 217 AIVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPD 276

Query: 70  SPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L
Sbjct: 277 ATSSGDYGRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGGADVRTQLREL 336

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-----SS 176
           + G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++     SS
Sbjct: 337 ERGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSS 396

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R+  MFSAT    I  LA+++ KD + + +      H  I      V  + +   + 
Sbjct: 397 RDGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLY 456

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G  
Sbjct: 457 RVLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGEL 516

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR------------------TGR 337
            + +ATDVAARG+D+  + LVI+ +L +N ++ +HR G                   TGR
Sbjct: 517 PILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGSKMVTVLPLLEMEEVFSSGTGR 576

Query: 338 AGRKGMSVFVI 348
           AG  G ++  +
Sbjct: 577 AGNLGTAIAFV 587


>gi|71026577|ref|XP_762954.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68349906|gb|EAN30671.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 707

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 173/351 (49%), Gaps = 19/351 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I   + E  +   T +Q+      L  +D++  +QTGSGKT+ F L     LLA+   
Sbjct: 328 QQIQNIIKESNFTEPTPIQKVGWTSCLTGRDIIGVSQTGSGKTLTFLLPGLLHLLAQ--- 384

Query: 69  FSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             P     P+ L ++PTREL +Q+  E         + +    GG S   + R+LQNGA 
Sbjct: 385 -PPVGTGGPIMLILSPTRELCLQIAEEARPYSRLLNLRLVPIYGGASKFAQVRELQNGAE 443

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL + +    + ++ +   V+DEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 444 IMVATPGRLLEFLSNGTIKLNRVSYFVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFS 503

Query: 187 ATISPAITTLAKNYQK-DAVRVNI------ASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           AT    I  LA  + K +++ + +      A+ N RQ+ +        +   RD     +
Sbjct: 504 ATWPSEIKRLASEFCKANSIYIQVGDLELTANPNIRQNVEFP-----NSYEVRDKLFDFL 558

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  ++F   ++   + T  L    F+  +L G  +Q +R   L M R G   V 
Sbjct: 559 GSIPPEKKVLIFSDLKSFADQLTSALRYRRFKSASLHGNKTQAQRERILNMFRSGDVNVL 618

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +ATDVAARG+D+ D++ VI+ ++  +  + +HR GRTGR   KG S+   P
Sbjct: 619 VATDVAARGLDIKDIDYVINLDVPKSLLDYIHRIGRTGRGNSKGESLLYFP 669


>gi|213514512|ref|NP_001133398.1| Spliceosome RNA helicase BAT1 [Salmo salar]
 gi|209153419|gb|ACI33160.1| Spliceosome RNA helicase BAT1 [Salmo salar]
          Length = 428

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 180/339 (53%), Gaps = 16/339 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P +
Sbjct: 59  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVT 111

Query: 74  APLA-LAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVV 129
             ++ L +  TRELA Q+ +E E    Y  T + VAV  GG+S+ ++   L+    H+VV
Sbjct: 112 GQVSVLVMCHTRELAFQISKEYERFSKYMPT-IKVAVFFGGLSIKKDEEVLKKECPHVVV 170

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSAT 188
           GTPGR+   IR K LN+ H+K  +LDE D+ML+ L  R D++ I   +P +++++MFSAT
Sbjct: 171 GTPGRILALIRNKTLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSAT 230

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +S  I  + + + +D + + +  E +   H    Y  V +  ++++  + ++L       
Sbjct: 231 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQY-YVKLKDNEKNRKLFDLLDVLEFNQ 289

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  +        ++L E  F  +A+   + Q+ER +  Q  +D + R+ +AT++  R
Sbjct: 290 VVIFVKSVQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 349

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           G+D+  + +  + ++  + +  LHR  R GR G KG+++
Sbjct: 350 GMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 388


>gi|73997169|ref|XP_866840.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 2 isoform 2 [Canis familiaris]
          Length = 407

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 173/352 (49%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+        Y+ V              
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK--------YQTV-------------- 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                                      E L Q         + +R  +L   +     + 
Sbjct: 236 ---------------------------EKLQQYYLFIPSKFKSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|83282276|ref|XP_729699.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488233|gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
          Length = 477

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 2/333 (0%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-AP 75
           E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L        +     +   
Sbjct: 114 EKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQGKTIQK 173

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           ++L + PTRELA+Q    ++ L     +   V  GG S+  +   L N  HI+ GTPGR+
Sbjct: 174 ISLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRLYNAVHILCGTPGRI 233

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D       N+S    +V+DEAD++L   F+  +E ++   PK++++LM+SAT    +  
Sbjct: 234 LDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILMYSATFPVTVKE 293

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             + Y  DA  +N+  E        Y A  V    + + +  +        AI+FC++  
Sbjct: 294 FRQIYLSDAHEINLMDELTLKGITQYYA-FVKERQKVHCLNTLFAKLQINQAIIFCNSIT 352

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    K + E  +    +   +SQ  R+      R+G  R  +++D+  RGID+  + +
Sbjct: 353 RVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLFTRGIDIQSVNV 412

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+ +   N E  LHR GR+GR G  G+++ +I
Sbjct: 413 VINFDFPKNSETYLHRIGRSGRYGHLGLAINLI 445


>gi|299117615|emb|CBN75457.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 610

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 176/345 (51%), Gaps = 21/345 (6%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY  LT VQ   + P L   DVL  A+TG+GKT++F L  A   +A   R +       L
Sbjct: 164 GYATLTKVQNDSIPPALAGHDVLAKAKTGTGKTLSF-LFPAIEGVARTPR-AQRKGIWVL 221

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA Q+  E   +     + +   +GG ++  + R  ++   IVV TPGRL DH
Sbjct: 222 IISPTRELAQQIADEANQVLTFHDMSLICVVGGTNIKADIRGFRDRPDIVVATPGRLNDH 281

Query: 139 IRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRMLMFSATISPAIT 194
           +   GL  +++ L  ++ DEAD++L++GFR  IE IL   P  + R+ L+FSAT+   + 
Sbjct: 282 LDNNGLAKDMAGLSHLIFDEADQLLEMGFRPAIEAILRYMPHSRDRQTLLFSATMPGDVR 341

Query: 195 TLAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA----- 247
            +A+   K+       +  E   H  +  +  +     +   +  +LR + A +      
Sbjct: 342 KIAQLALKERYEFVDCVGEEESTHQHVPQQYTVCGQDQQVEELCQLLRENMAADPRGHKI 401

Query: 248 IVFCSTRASVSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           IVF +T    +R T+  AE      F V+ +    SQ  R+   ++ R+G+  V   +DV
Sbjct: 402 IVFFTT----ARLTQFYAELCNLMGFPVLEIHSRKSQGHRNKVSELFRNGQGLVMFTSDV 457

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ARG+D PD+  VI   L S+    +HR GRT RAG+ G  V ++
Sbjct: 458 SARGMDYPDVSAVIQVGLPSDKAQYIHRLGRTARAGKAGHGVLLL 502


>gi|146281264|ref|YP_001171417.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
 gi|145569469|gb|ABP78575.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
          Length = 372

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 144/272 (52%)

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA QV            +      GGVS++ +   L+ G  ++V TPGRL 
Sbjct: 8   ALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVLVATPGRLL 67

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D  R   +  + L+A+VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT S  I  +
Sbjct: 68  DLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPRKRQTLLFSATFSEPIRQM 127

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+   +D + V ++  N     +    V V    +    +++L        +VF  TR  
Sbjct: 128 ARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLAERCWGQVLVFVKTRKG 187

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V +    L        A+ G+  Q  R  AL+  + G  +V +ATDVAARG+D+ DL  V
Sbjct: 188 VDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQVLVATDVAARGLDIHDLPQV 247

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++ +L    E+ +HR GRTGRAG  G ++ ++
Sbjct: 248 VNFDLPIVAEDYVHRIGRTGRAGASGEAISLV 279


>gi|302682610|ref|XP_003030986.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
 gi|300104678|gb|EFI96083.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
          Length = 775

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 182/361 (50%), Gaps = 16/361 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F ++P  Q     L +  ++N+T VQ   L   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 51  LKLFSDLPISQATKRGLKKAAFINMTDVQAKSLPVSLKGKDVLGAARTGSGKTLAFLIPV 110

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++ PA    AL I+PTRELAVQ+   L  +         + IGG ++  ER
Sbjct: 111 LEILYRR--KWGPADGLGALIISPTRELAVQIFEVLRSIGPFHSFSAGLVIGGKNLKDER 168

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    +I+V TPGRL  H+ +  G    +L+ +VLDEAD +LD+GF   +  +L   P
Sbjct: 169 DRLVR-MNILVATPGRLLQHMDQTYGFECDNLQVLVLDEADRILDMGFAKTLSALLGHLP 227

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-----DIDYRAVLVALSDRD 232
           K R+ L+FSAT + +++ LA+    D   +        H+     +++    +  L  + 
Sbjct: 228 KSRQTLLFSATQTDSVSDLARLSLTDPAFIATKEAEESHTATTPKNLEQHYAICTLDQKL 287

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRF---TKVLAEHLFQVVALSGELSQQERSNALQM 289
           + + + ++ H     +VF S+   V RF   T    +    ++ L G+  Q  R      
Sbjct: 288 DLLWSFIKTHLQSKTLVFLSSCKQV-RFVYETFCKMQPGVSLLHLHGKQKQMTRLAMYDR 346

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
                  V  ATD+AARG+D P ++ V+  +   + E  +HR GRT R   KG   +F++
Sbjct: 347 FTKMSHVVLFATDIAARGLDFPAVDWVLQLDAPEDVETYIHRVGRTARYESKGKGLLFLM 406

Query: 349 P 349
           P
Sbjct: 407 P 407


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 202 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 260

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 261 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 320

Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +    GK  N+  +  +V+DEAD M D+GF   I  I+ +   +R+ ++FSA
Sbjct: 321 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 380

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   SDR   ++ +L     K  
Sbjct: 381 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGK 440

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  ++       + + +  +  ++L G   Q +R + +   ++    + IAT VAAR
Sbjct: 441 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR 500

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S
Sbjct: 501 GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS 560

Query: 367 VVWEPAP 373
              +P P
Sbjct: 561 --EQPVP 565


>gi|122937741|gb|ABM68586.1| AAEL001216-PA [Aedes aegypti]
          Length = 419

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 180/343 (52%), Gaps = 13/343 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L     
Sbjct: 50  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL----- 103

Query: 68  RFSPA-SAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
              P  + P  L +  TRELA Q+ +E E +      + VAV  GG+ + ++   L++  
Sbjct: 104 --EPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFFGGLPIQKDEEVLKSTN 161

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            HI+VGTPGR+   IR K LN+ HLK  +LDE D+ML+ L  R D++ I  ++P  ++++
Sbjct: 162 PHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRRDVQEIFRNTPHGKQVM 221

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +     +    V +  ++++  +  +L   
Sbjct: 222 MFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVL 281

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   + Q+ER +  Q  +D + R+ +AT+
Sbjct: 282 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVATN 341

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 342 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 384


>gi|225681866|gb|EEH20150.1| ATP-dependent RNA helicase mss116 [Paracoccidioides brasiliensis
           Pb03]
          Length = 773

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/369 (32%), Positives = 181/369 (49%), Gaps = 50/369 (13%)

Query: 21  VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--------AENDRF-SP 71
             +T VQ   +N  L   DVL  A+TG+GKT+AF + +   +L        A N+R  S 
Sbjct: 101 TTMTEVQRMTINATLNGSDVLAQAKTGTGKTLAFLIPVVQNILKDEQLSQRARNNRSRSN 160

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL----QNGAHI 127
           AS   AL I+PTRELA Q+  E + L + T V+V   +GG    R+R  L    + G HI
Sbjct: 161 ASDIRALIISPTRELAEQIAVEAKKLVSNTSVIVQTAVGGT---RKREGLMRIQREGCHI 217

Query: 128 VVGTPGRLCDHIRG--KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK----RR 181
           +VGTPGRL D       G+    L A+VLDEAD +LD+GF  DI+ +    P++    R+
Sbjct: 218 LVGTPGRLIDIFSDPKSGVAAPKLSALVLDEADRLLDIGFAPDIKELQSYLPRRQDVDRQ 277

Query: 182 MLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
            LMFSAT+   +  + +   K D   V    E+   + +     LV L   +N   AI  
Sbjct: 278 TLMFSATVPTEVMDMVRQTMKPDFTFVKTVKEDETPTHLTVPQKLVYLRGMENQLPAIFE 337

Query: 238 ILRYHGAKN-----------AIVFCSTRASVSRFTKVLAEHL-------------FQVVA 273
           + + +  K+           AIV+ ++ A V    +  +                FQ   
Sbjct: 338 LAKKYIEKHKNDPDNVKPFKAIVYFNSTAEVGLARQAFSAMRYDLSSNSGHPLPDFQCFE 397

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           +   LSQ++R+ +  + R   + +  ++DV ARG+D PD+  VI   +  + E  +HR G
Sbjct: 398 MHSRLSQEQRTRSSGLFRQASSAMLFSSDVTARGMDFPDVTHVIQIGVPRDRETYIHRLG 457

Query: 334 RTGRAGRKG 342
           RTGRA +KG
Sbjct: 458 RTGRANKKG 466


>gi|198429555|ref|XP_002122319.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 1 [Ciona intestinalis]
          Length = 627

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 207/389 (53%), Gaps = 13/389 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ + G+ ++  +Q   + P L  +D+L +A+TGSGKT+AF   + +  L    RF P 
Sbjct: 155 KAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAF--LIPAIELMYKLRFMPR 212

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    + I+PTRELA+Q+   L+ L         + +GG +   E + L NG +I+V TP
Sbjct: 213 NGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAKKLGNGINIIVATP 272

Query: 133 GRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL DH++  +     +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++FSAT + 
Sbjct: 273 GRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPKRRQTMLFSATQTK 332

Query: 192 AITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNA 247
            I  LA+ + +K  + V +  ++ Q + +D   +   V  S+ R   +   LR +  K  
Sbjct: 333 KIEDLARVSLKKMPLYVGV-DDSEQSATVDGLEQGYAVCPSEKRFLVLFTFLRRNRDKKV 391

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF S+  SV    ++L       +++ G   Q +R+       +    + + TDVAARG
Sbjct: 392 MVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADKGILLCTDVAARG 451

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFREANV 365
           +D+P+++ ++  +   +P+  +HR GRT R   GR    +F+ P  +        R A V
Sbjct: 452 LDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGRGHALLFLRPSELG--FLHYLRHAKV 509

Query: 366 SVV-WEPAPSVEAIRERDAQRILQDPLFL 393
            V  +E + S  A  +   +R++Q   FL
Sbjct: 510 PVSEFEFSWSKIANIQTQLERLIQKNYFL 538


>gi|296210932|ref|XP_002752173.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
           [Callithrix jacchus]
          Length = 406

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+                    A+S +   +  +
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVK-------------------CAVSSKYQTVEKL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +Y+      +F       S+F                   + +R  +L   +     + 
Sbjct: 239 QQYY------IFIP-----SKF-------------------KSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|259047162|ref|ZP_05737563.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036212|gb|EEW37467.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 462

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 178/348 (51%), Gaps = 12/348 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL++  +   T +QE I+   L+ + V+  +QTGSGK+ +F L L        ++  
Sbjct: 40  LQKALADLKFTQPTPIQERIIPLLLKGESVIGQSQTGSGKSHSFLLPLI-------NKID 92

Query: 71  PASAPLALAIA-PTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDL-QNGAH 126
           P+   L L I  P+RELA Q+      L  ++ T +++  CIGG    R+   L Q   H
Sbjct: 93  PSRQELQLVITVPSRELAEQLTAVAAQLITFSDTEILLEKCIGGTDKKRQVAKLTQTQPH 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+GTPGR+ D ++   L +  ++ +V+DEAD   DLGF + ++ I    P+  +M +FS
Sbjct: 153 IVIGTPGRIFDLMQENALFVQTVQMMVVDEADMTFDLGFLETVDEIASRMPENLQMSVFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I    K Y  +   + I +       I  + ++    +  + +  +L       
Sbjct: 213 ATIPDKIRPFLKKYLGNPKVIQIENTQLVSPTIKNQLLVTKAQNPMDVLRQLLVMGHPYL 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F +T+      TK L  H F+V  + G++  +ER   ++ ++    +  +ATD+AAR
Sbjct: 273 VLIFVNTKQKADEVTKDLRNHNFKVATIHGDIPSRERRRVMKQIQQMDYQFVVATDLAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           GID+  +  VI+ E+    E  +HR GRTGR G +G ++ F  P   Q
Sbjct: 333 GIDIEGVSHVINLEIPGELEFFIHRVGRTGRNGLEGTAITFYTPDQEQ 380


>gi|242022824|ref|XP_002431838.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
           corporis]
 gi|212517170|gb|EEB19100.1| ATP-dependent RNA helicase MAK5, putative [Pediculus humanus
           corporis]
          Length = 543

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 195/384 (50%), Gaps = 43/384 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           I + I  AL ++ Y   T +Q   L P +  + D+L +A+TGSGKT+AFG+ + + +L+ 
Sbjct: 9   IHEKILYALYDKKYFEPTKIQSRCLGPAICGQMDILGAAETGSGKTLAFGIPIVNGILSI 68

Query: 65  ---------ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
                    E+ +       L AL + PTRELAVQV   L  +   T + +A+ +GG++ 
Sbjct: 69  MEKELNQSIESLKMKNEKNNLYALILTPTRELAVQVRNHLNDICKYTKINIALIVGGLAH 128

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEF 171
            ++ R L     I+V TPGRL + +    +   NI +L+ + +DE D ML+ G   ++  
Sbjct: 129 EKQERILNKRPEIIVATPGRLWELVNDNNIHLSNIKNLRYLAIDETDRMLEKGHFTELND 188

Query: 172 ILD------SSPKKRRMLMFSATIS-----PAITTLAKNYQ-------KDAVR------- 206
           +L+      +  KKR+  +FSAT++     P+     KN +       +D +        
Sbjct: 189 LLERINLNENKKKKRQNFLFSATLTVVHDPPSYLKGKKNKRITPGQKLQDLISKIGITNP 248

Query: 207 --VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
             V+I + +    ++    +L    ++D  +   LR    +  ++FC++   V R   +L
Sbjct: 249 KIVDITNTHVTAENLSEFKILCQFEEKDYYLFQCLRSQKGR-FMIFCNSIGCVKRLANLL 307

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               F+ + L   + Q++R   L+  RD    + +ATDVAARG+D+P+++ VIH ++   
Sbjct: 308 NIVNFKPLPLHANMEQKQRLRNLEKFRDNPDSLLLATDVAARGLDIPNVDYVIHYQVPKT 367

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI 348
            E  +HRSGRT RA   G ++ +I
Sbjct: 368 AEIYVHRSGRTARANTVGNALLLI 391


>gi|119467294|ref|XP_001257453.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
           NRRL 181]
 gi|143586096|sp|A1DL85|SUB2_NEOFI RecName: Full=ATP-dependent RNA helicase sub2
 gi|119405605|gb|EAW15556.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
           NRRL 181]
          Length = 441

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/377 (29%), Positives = 196/377 (51%), Gaps = 25/377 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L     L        P  
Sbjct: 72  AITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQL-------EPVP 124

Query: 74  APLA-LAIAPTRELAVQVGRELEWLYAKTG-----VVVAVCIGGVSVHRERRDLQNG--- 124
              + L +  TRELA Q+  E    YA+       V  AV  GG  + ++   L N    
Sbjct: 125 GECSVLVMCHTRELAYQIKNE----YARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKESY 180

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            +IVVGTPGRL   +R K L++ ++KA VLDE D+MLD +  R D++ I  ++P  ++++
Sbjct: 181 PNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVM 240

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRY 241
           MFSAT+S  I  + K + ++ + V +  + +   H    Y  + ++ S+++  +  +L  
Sbjct: 241 MFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQY-YIKLSESEKNRKLNELLDS 299

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+AT
Sbjct: 300 LEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVAT 359

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           DV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+S+ FV  +  ++  + + 
Sbjct: 360 DVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIE 419

Query: 361 REANVSVVWEPAPSVEA 377
           +   V++   P   V++
Sbjct: 420 KRFEVALPEYPEGGVDS 436


>gi|148232160|ref|NP_001084651.1| hypothetical protein LOC414610 [Xenopus laevis]
 gi|46249606|gb|AAH68844.1| MGC81500 protein [Xenopus laevis]
          Length = 317

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 152/286 (53%), Gaps = 7/286 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +  TLL   
Sbjct: 26  VTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+  + E + +  GV  AV +GG+ +  +   L    H
Sbjct: 86  QRL------YALVLTPTRELAFQISEQFEAIGSSIGVKSAVIVGGIDMMSQSLALAKKPH 139

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +F
Sbjct: 140 VVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V IL      
Sbjct: 200 SATMTKKVQKLERAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNELAGN 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + ++FCST  +  R   +L    F  + L G++SQ +R  AL   +
Sbjct: 260 SFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGALNKFK 305


>gi|332255431|ref|XP_003276835.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform 4
           [Nomascus leucogenys]
          Length = 722

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 188/394 (47%), Gaps = 53/394 (13%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +I    +     ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   
Sbjct: 110 PHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMES 169

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   +  P AL + PTRELA+Q    ++ L      +V  V +GG     E+  L+ G +
Sbjct: 170 KIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFMWIVPGVLMGGEKRKSEKARLRKGIN 229

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           I++ TPGRL DHI+  K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ 
Sbjct: 230 ILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQN 289

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-----------------SDIDYRAVL 225
           ++ SAT++  +T LA     D V +++  ++                     ++D  A+ 
Sbjct: 290 VLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDELDSFAIP 349

Query: 226 VALSDRDNAIVNILR-------------YHGAKNAIVFCSTRASV----SRFTKVL---- 264
            +L      + + LR             +   +  +VF S+   V    S F + L    
Sbjct: 350 ESLEQHVTVVPSKLRLVCLAAFILQKCKFEKDQKMVVFFSSCELVEFHYSLFLQTLLSSS 409

Query: 265 ----------AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                     A    + + L G + Q+ER+   Q     R  V + TDVAARG+DLP + 
Sbjct: 410 GAPASGQLPSASTRLKFLRLHGSMEQEERTAVFQEFSRSRRGVLLCTDVAARGLDLPQVT 469

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++     S+P   +HR GRT R G  G S+ ++
Sbjct: 470 WIVQYSAPSSPAEYIHRIGRTARIGCHGSSLLIL 503


>gi|281206327|gb|EFA80516.1| exocyst complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1349

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 172/325 (52%), Gaps = 15/325 (4%)

Query: 35   LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
            L  +D++  +QTGSGKT++F L     +L++  +  P   P  L IAPTREL+VQ+  E 
Sbjct: 948  LSGRDMIGISQTGSGKTISFFLPAIQHILSQPRQTGPYLGPQVLIIAPTRELSVQISHEA 1007

Query: 95   EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
            +       +   V  GG S   + RDL+    +V+GTPGR+ D ++   LN+  +   VL
Sbjct: 1008 QPYLKAARLNSVVMFGGESKSHQIRDLKRCPQVVIGTPGRIIDIMKEGYLNLKRVSFFVL 1067

Query: 155  DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-EN 213
            DEAD ML++GF D I  I ++    R++L ++AT    + TLA  +  + V+V + S E 
Sbjct: 1068 DEADRMLEMGFEDQIRAIFENIRPDRQVLYWTATWPRKVQTLAHEFIVNPVKVQVGSTEL 1127

Query: 214  RQHSDIDYRAVLV-ALSDRDNAIVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
              + +I    ++V +  D+ NA+V+    I         I+F  T+    +    LAEH+
Sbjct: 1128 TANPNIKQNFIVVDSEKDKVNALVDTLEKIFNERPEAKVIIFTMTKGGADK----LAEHI 1183

Query: 269  FQ-----VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS 323
             Q     + ++ G+  Q  R   +   ++    + +ATDVA+RG+D+  +  VI+  + +
Sbjct: 1184 GQIGNARIESIHGDKQQSRRIAIINGFKNNFIDILVATDVASRGLDIRTITDVINFSMPT 1243

Query: 324  NPENLLHRSGRTGRAGRKGMSVFVI 348
              E+ +HR GRT RAG  G S  +I
Sbjct: 1244 QIESYVHRIGRTARAGATGESHTII 1268


>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
 gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 408

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 188/352 (53%), Gaps = 10/352 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++    ++ E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L    
Sbjct: 2   LFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    RFS  +    + + PTRELA Q+ R    L  +  +   +  GGV    +   
Sbjct: 62  HIIDFPRRFSGQAR--VVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V TPGRL +++     N   ++ +V+DEAD MLD+GF   +E I   S  ++
Sbjct: 120 LKGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRK 179

Query: 181 RMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IV 236
           + ++FSAT+  + +   +     D V+V   +   + + I ++ + +A  D+++    + 
Sbjct: 180 QTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKI-HQWIHIA-DDKEHKFKLLC 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+    + AIVF  TR +V+    +L         + G++ Q++R  AL     G   
Sbjct: 238 SILQQEETQRAIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVN 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++
Sbjct: 298 VLLATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLV 349


>gi|322701321|gb|EFY93071.1| DEAD/DEAH box RNA helicase [Metarhizium acridum CQMa 102]
          Length = 631

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 185/377 (49%), Gaps = 25/377 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ E +   GY   T +Q+  +   L+  DV+  AQTGSGKT A+ + +   L+ +  + 
Sbjct: 109 VMAENIKLMGYDAPTPIQKYTIPSMLQGHDVIGIAQTGSGKTAAYLIPILGKLMGKAKKL 168

Query: 70  S-----PAS----------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           +     PA+           PL L +APTRELAVQ+  E      ++ +   V  GG+ +
Sbjct: 169 AAPRPNPATYREGIDAVTAEPLVLVVAPTRELAVQIFNEARKFCYRSMLRPCVVYGGLPM 228

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
            ++   L  G  I+VGTPGRL D I R   L +  LK +++DEADEMLD  + D++  IL
Sbjct: 229 GQQISLLSKGCDILVGTPGRLVDFISRPHILTLRRLKYMIIDEADEMLDSDWNDELSMIL 288

Query: 174 DSSPKKR---RMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALS 229
               +     +  +FSAT   A   LAK++   A VR  +        +I    +     
Sbjct: 289 TGGEQDEGNIKYGLFSATFPKAARDLAKDHLSAAHVRFRVGRAGSTTENIKQVILATERE 348

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++ + ++ +L        I+F ++R  V      L      V ++  E +Q+ER  AL+ 
Sbjct: 349 EKRDTLLRLLNQMTGVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSERTQKEREAALRS 408

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGRKGMSV 345
            R G+A + IAT V ARGID+ ++  VI+ +L +      E   HR GRTGR G +G++ 
Sbjct: 409 FRAGQAPILIATGVTARGIDVRNVMHVINYDLPTMEHGGIEEYTHRIGRTGRIGHRGLAT 468

Query: 346 -FVIPQNMQRRAERLFR 361
            F  P N    A  L R
Sbjct: 469 SFFDPVNDDSMASVLTR 485


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 184/361 (50%), Gaps = 6/361 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++   + +  +   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 235 FAQYPELM-RNIKKASFQKPTPIQSQAWPVILQGIDLIGVAQTGTGKTLSYLMPGFIHLD 293

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G   +   GG +   +  D+  
Sbjct: 294 SQPTSREERNGPGMLVLTPTRELALQVESECS-KYSYKGFKSSCIYGGGNRRGQIEDIAK 352

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLDLGF   I + +LD  P  R+ 
Sbjct: 353 GVDIIIATPGRLNDLQLNNHVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPD-RQT 411

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241
           +M SAT   AI  LA +Y KD + V + + +        + V+V   +   A++   L  
Sbjct: 412 VMTSATWPDAIRRLAHSYLKDPMMVYVGTLDLVAVSTVQQNVIVTTEEEKRALIQEFLEN 471

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              ++  IVF S + +       L      + +L G+  Q +R  AL+  R G+ ++ IA
Sbjct: 472 MTPRDKVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALEDFRTGKVKILIA 531

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G S+ ++  N  + A+ L 
Sbjct: 532 TDLASRGLDVNDITHVYNYDFPRNIEEYVHRIGRTGRAGKVGTSITLVTPNDAKIADELI 591

Query: 361 R 361
           +
Sbjct: 592 K 592


>gi|149713748|ref|XP_001501504.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
           [Equus caballus]
          Length = 406

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 173/352 (49%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+        Y+ V              
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK--------YQTV-------------- 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                                      E L Q         + +R  +L   +     + 
Sbjct: 236 ---------------------------EKLQQYYLFIPSKFKSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3]
 gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 410

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 180/340 (52%), Gaps = 8/340 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     ++    RF   
Sbjct: 17  ESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQHIIDFPRRFGGQ 76

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +    L + PTRELA Q+ R    L     + +++  GGV    +   L+    I+V TP
Sbjct: 77  AR--VLVLTPTRELASQIHRYASHLATDLDLDISIITGGVPYAPQEEALKKNVDILVATP 134

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL +++     N   ++ +V+DEAD MLD+GF   +E I   S  +++ ++FSAT+  +
Sbjct: 135 GRLMEYLDKGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRKQTMLFSATLEGS 194

Query: 193 -ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRYHGAKNAI 248
            +   +     + V++   +   + + I ++ V +A  DR++    +  IL+    + AI
Sbjct: 195 DVGRFSHQLLSNPVKLEAEAPRSEKAKI-HQWVHIA-DDREHKFALLYAILQQEEVERAI 252

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR +V+    +L +       + G++ Q+ R  AL     G   V +ATDVAARGI
Sbjct: 253 VFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNVLLATDVAARGI 312

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++
Sbjct: 313 DVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLV 352


>gi|291396480|ref|XP_002714472.1| PREDICTED: rCG25924-like [Oryctolagus cuniculus]
          Length = 649

 Score =  160 bits (404), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 184/361 (50%), Gaps = 10/361 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P+V+ + + + G+   T +Q       L+  DV+  AQTG+GKT+++   +   + 
Sbjct: 250 FETFPEVM-KNIEKAGFKKPTPIQSQTWPIVLQGIDVIGVAQTGTGKTLSY--LMPGFIH 306

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            +       + P  L + PTRELA+QV  E      K   + +VCI GG     + +D+ 
Sbjct: 307 LDCQPVEKRNGPGMLVLTPTRELALQVQAECSKYSYKN--LRSVCIYGGGDREAQIQDVS 364

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRR 181
            G  IV+ TPGRL D      + +  +  +VLDEAD+MLD+GF   I + +LD  P  R+
Sbjct: 365 KGVDIVIATPGRLNDLQMNNFIRLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPD-RQ 423

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
            +M SAT    +  LA++Y K+ + V + + +    S +    ++    ++   I   L 
Sbjct: 424 TIMTSATWPYGVRRLAQSYLKEPMLVYVGTLDLVAVSTVKQNIIITTEEEKRIHIQKFLE 483

Query: 241 YHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               K+  IVF S +      +  L      V +L G   Q +R  AL+  + G+ R+ I
Sbjct: 484 NMSPKDKVIVFVSRKIVADHLSSDLVLQHLSVESLHGNREQSDREKALKNFKTGKVRILI 543

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG  G+S+ +I +N  R A  L
Sbjct: 544 ATDLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGNTGVSITLITRNDWRVAAEL 603

Query: 360 F 360
            
Sbjct: 604 I 604


>gi|270011943|gb|EFA08391.1| hypothetical protein TcasGA2_TC006038 [Tribolium castaneum]
          Length = 578

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 195/349 (55%), Gaps = 14/349 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  A+    +  +T +Q A +   L +KDV+  A TGSGKT+AF + L   +L + D++ 
Sbjct: 16  VQNAVKTLNFPTMTPIQAAAIPQLLNKKDVVAEAVTGSGKTLAFLIPLLQ-ILKQRDKWK 74

Query: 71  PASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIV 128
            A    AL I+PTRELA Q+ + L + L + +G+   + +GG SV  +  +L+ NG +I+
Sbjct: 75  KAEIG-ALIISPTRELATQINQVLNQLLESISGITSLLLVGGNSVEEDLNNLKCNGGNII 133

Query: 129 VGTPGRLCDHIRGKG-----LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           + TPGR  D +  K      L + +L+ ++LDEAD +LD GFR  ++ IL   PK+RR  
Sbjct: 134 ICTPGRFEDLLSRKSDFNLTLALKNLEILILDEADRLLDYGFRKSLDVILSYLPKQRRTG 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT +  +  L +   ++ V V+++  +E+     ++   V+   +++  A+   L+ 
Sbjct: 194 LFSATQTKQLQDLIRAGLRNPVLVSVSVKAEHSTPEKLENYYVVANNNNKLAALFAFLQS 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCI 299
              + A++F  T A V  +++          V+A+ G++ +++R   ++  ++    + +
Sbjct: 254 RDVQKAMLFLPTCAVVDFWSETFPCVFNDLPVLAIHGKM-KEKRKKIIERFKNSPKGLLL 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            TDV ARGID+P+++ V+  +  ++    +HR GRT R GR+G S+  +
Sbjct: 313 CTDVLARGIDIPEVDWVLQWDPPASASAFVHRVGRTARQGRQGSSLLFL 361


>gi|118344314|ref|NP_001071981.1| zinc finger protein [Ciona intestinalis]
 gi|92081542|dbj|BAE93318.1| zinc finger protein [Ciona intestinalis]
          Length = 627

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 175/350 (50%), Gaps = 13/350 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P +IG  L ++     T +Q   +   L  +D++  A TGSGKT+ F L L    + +  
Sbjct: 196 PIIIG--LKKKHIRKPTPIQTQGIPVVLSGRDMIGIAFTGSGKTLVFTLPLLMFCIEQEK 253

Query: 68  R--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------TGVVVAVCIGGVSVHRER 118
           +  F     P  L + P+RELA Q  + + + YAK         + +A+CIGG+      
Sbjct: 254 KLPFLQNEGPYGLIVCPSRELARQTHQVMSY-YAKHLEGGGLPSLRIALCIGGIPAKETV 312

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G H V+ TPGRL D +  K +N+   + + LDEAD M+D+GF +D+  I      
Sbjct: 313 NIIRKGCHAVIATPGRLMDMLNKKMMNLGVCRFLCLDEADRMIDMGFEEDVRTIFSYFKG 372

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A++     V VN+        DI      V    +   ++N 
Sbjct: 373 QRQTLLFSATMPKKIQNFARSALVCPVTVNVGRAGAASLDIIQEVEYVKDEAKVVHLLNC 432

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +   +VF   +  V    + L     + VA+ G   Q+ERS A+ + R     V 
Sbjct: 433 LQ-KTSPPVLVFAQKKKDVDDIHEYLLLKGVEAVAIHGGKDQEERSRAVDLFRTREKDVL 491

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +ATD+A++G+D   ++ V++ ++  + EN +HR GRTGR+G  G++   I
Sbjct: 492 VATDIASKGLDFEGIKHVLNYDMPDDIENYVHRIGRTGRSGCTGIATTFI 541


>gi|39645219|gb|AAH12726.2| DDX31 protein [Homo sapiens]
          Length = 777

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 179 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 238

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 239 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 298

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 299 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 358

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 359 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 418

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 419 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 478

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 479 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 538

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 539 IHRIGRTARIGCHGSSLLIL 558


>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
 gi|187036409|emb|CAP24509.1| hypothetical protein CBG_03667 [Caenorhabditis briggsae AF16]
          Length = 565

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 175/338 (51%), Gaps = 21/338 (6%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T VQ A +   L   D+L  A+TG+GKT+AF + +   L        P     AL + PT
Sbjct: 117 TPVQAACIPRILDGSDILGCARTGTGKTLAFAIPILQKL-----SIDPYGI-YALILTPT 170

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+  +   +     +  +V +GG S+  + R+L    HIVV TPGRL D I    
Sbjct: 171 RELAFQIADQFTAVGKPITLKCSVIVGGRSLIHQARELSERPHIVVATPGRLTDLIESDP 230

Query: 144 LNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
             I+  ++  VLDEAD ML+  + D ++ I  S P+KR+ L+ SATI+  I TL     K
Sbjct: 231 EVIAKKIQFFVLDEADRMLEGQYNDQLKPIFQSIPEKRQTLLLSATITQNINTL----HK 286

Query: 203 DAVRVNIASENRQHSD------IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + R     E++   D      ++ + V+  ++ +D  +V +++ +  KN        A 
Sbjct: 287 VSTRKPYFFEDKGKDDETTVDRLEQKFVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQ 346

Query: 257 VSRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
             R  + LA       F+V +L  ++ Q++R  AL   R    +V I TDVA+RG+D+P 
Sbjct: 347 TCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPH 406

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++LV++  +   P+  +HR GR+ RAGR G ++  + Q
Sbjct: 407 VDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQ 444


>gi|227535444|ref|ZP_03965493.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|301066125|ref|YP_003788148.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|227186927|gb|EEI66994.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|300438532|gb|ADK18298.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 428

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 175/331 (52%), Gaps = 16/331 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q A+  P   ++DV+  A TGSGKT+AFGL L   ++       P      L
Sbjct: 15  GYTEQTPIQTAVYQPLKADEDVVGLAPTGSGKTLAFGLPLLEKMV-------PGDGLQLL 67

Query: 79  AIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +AP++ELA+Q  R++   YAK  G+ V   IG  +V R+   L+    +VV T GRL +
Sbjct: 68  ILAPSQELAIQT-RDVLTPYAKDIGITVQGVIGSANVKRQLDRLKEKPEVVVATAGRLLE 126

Query: 138 HIRGKGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
            I+ + L +  L+ +V+DEADEML D GF D +  I  ++P + ++  FSAT SP    L
Sbjct: 127 LIQSRKLKLDGLQTLVVDEADEMLRDPGF-DQVREIAAAAPAEAQLAFFSATPSPYFKEL 185

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFCSTR 254
            K + K    +++ + +R   ++ +   L   +DR + +  +  L +     A+VF +  
Sbjct: 186 HKWFGKTPDIIDVRAIDRTRGEVRH---LFLQTDRAHQVDWLRTLAHTDGFKALVFFNQN 242

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           +S+ R   +L     +   LS E  Q  R  AL   R GR  + + TD+A RG+D+P L 
Sbjct: 243 SSLERVAGILRHQAVRFAVLSREGRQTVRQKALTDFRRGRITLLLVTDMAGRGLDIPKLP 302

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            V++ E     E  +HR+GRTGR G  G+ V
Sbjct: 303 AVVNFEPPKRAEVYIHRAGRTGRMGEAGLVV 333


>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
          Length = 619

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 175/356 (49%), Gaps = 13/356 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK+ E I       L E+     T +Q   +   L  +D++  A TGSGKT+ F L L  
Sbjct: 183 MKLHEGIIS----GLKEKKIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPLIM 238

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGV 112
             L +  +  F     P  L I P+RELA Q    ++        +    +  ++ IGGV
Sbjct: 239 FCLEQEVKLPFIKNEGPYGLIICPSRELAKQTFDIIQHFCNSLRKHGMPEIRTSLAIGGV 298

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V      +Q G HI+V TPGRL D +  K + +S  + + +DEAD M+DLGF +D+  I
Sbjct: 299 PVSEAVDVIQRGVHIMVATPGRLMDMLEKKIVKLSVCRYLCMDEADRMIDLGFEEDVRTI 358

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   A++     V +N+        ++      V    + 
Sbjct: 359 FSYFNGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEAKV 418

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+       ++F   +  V    + L     + VA+ G   Q+ERS +++  R 
Sbjct: 419 VYLLECLQ-KTPPPVLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAFRK 477

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G++G++   I
Sbjct: 478 HEKDVLVATDVASKGLDFPDIQHVINYDMPDDVENYVHRIGRTGRSGKQGLATTFI 533


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 172/330 (52%), Gaps = 11/330 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +       A N      +    +
Sbjct: 36  GFDRPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVG------ALNCVNRNLNETQII 89

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            ++PTRELA Q  +    L     V V  CIGG  +  + + L NG HI+ GTPGR+   
Sbjct: 90  ILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIKALNNGVHIISGTPGRIYHM 149

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  + L   ++K +V+DEADEML+ GF++ +  I        ++++ SAT+   +  +  
Sbjct: 150 LNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPNTQIVLSSATLPHEVLEITN 209

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTRA 255
            +  + V++ +  +      I  +   +++     +   + ++        A+VFC+T+ 
Sbjct: 210 KFMHNPVKILVKRDELTLEGI--KQFFISIEKEQWKYETLADLYESLTITQAVVFCNTKL 267

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    K + E  F V  +   +SQ ER + +   R  + RV I+TD+  RG+D+ ++ L
Sbjct: 268 KVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVLISTDIWGRGLDVHEVSL 327

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           V++ +L ++ E  +HR GR+GR GRKG+++
Sbjct: 328 VVNYDLPNSRECYIHRIGRSGRFGRKGVAI 357


>gi|291402679|ref|XP_002717721.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like
           [Oryctolagus cuniculus]
          Length = 620

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 182/357 (50%), Gaps = 12/357 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T VQ  +L   L  +D+L SA TGSGKT AF L +   
Sbjct: 206 FEHCGFPEALNHNLKTAGYEVPTPVQMQMLPVGLLGRDILASADTGSGKTAAFLLPVIVR 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +S P AL + PTRELAVQ+ R+  E +     +   + +GG+ +  +   
Sbjct: 266 ALCE------SSCPSALILTPTRELAVQIERQAKELMRGLPCMRTVLLVGGLPMPPQLYR 319

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   +++  +K VV+DEAD ML +GF+  +  +L+S P   
Sbjct: 320 LRQRVKVIIATPGRLLDIIKQSSVDLRGIKIVVVDEADTMLKMGFQQQVLDVLESVPSDC 379

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL- 239
           + L+ SATI  +I  L+     D VR++   +N     +    + V    +   +  IL 
Sbjct: 380 QTLLVSATIPASIEQLSSQLLHDPVRISTGEKNLPCPSVRQIVLWVEDPAKKKKLFEILN 439

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRARV 297
            R       +VF   +      +  + +    + V++  E SQ ER + LQ + +G   V
Sbjct: 440 DRKLFKPPVLVFVDCKLGADLLSDAVQKVTALRSVSVHSEKSQTERRSILQGLLEGDYDV 499

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++T V  RG+DL  ++LV++ ++  + +  +H+ GR GR G++G ++  I  N +R
Sbjct: 500 VVSTGVLGRGLDLISVKLVVNFDMPPSMDEYVHQVGRVGRLGQQGTAITFINNNSKR 556


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/351 (32%), Positives = 175/351 (49%), Gaps = 21/351 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 489 GYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVHG--VSPARQRKSY 546

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRDLQNGAHIVVGTPG 133
           P+AL +APTRELAVQ+  E+  L   T +   V  GG     R  +D      I+V  PG
Sbjct: 547 PIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQRFEQD------ILVACPG 600

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSA 187
           RL D    + L+ S +K ++LDEAD ML++GF + IE ++ S      +   R+  MFSA
Sbjct: 601 RLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVDDRQTFMFSA 660

Query: 188 TISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           T    I  LAK Y ++    + +        +I      V  +++ + ++ I+  H   +
Sbjct: 661 TFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSD 720

Query: 247 AI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            + +F  T+       + L         + G+  QQ+R  AL+  +     + +ATDVA+
Sbjct: 721 MVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVAS 780

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++     +N +R A
Sbjct: 781 RGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLA 831


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 184/350 (52%), Gaps = 15/350 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + N+ + + +A+   G+   T +Q A +   L  +D+   A TG+GKT AF L +   LL
Sbjct: 149 YMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPILERLL 208

Query: 64  AENDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                F P   S    L + PTRELA+QV      L   + V + +C GG+ +  +   L
Sbjct: 209 -----FKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEAAL 263

Query: 122 QNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G  IV+ TPGRL DH+      ++  ++ +VLDEAD MLD  F D ++ ++      R
Sbjct: 264 RLGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSANR 323

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAI 235
           + L+FSAT++  I  LA    K+ VR+ I +EN + + ++ R   + +      +R++ +
Sbjct: 324 QTLLFSATMTDQIEQLAAVSLKNPVRIFI-NENTE-TALNLRQEFIRIRENHEHERESIV 381

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V ++      + ++F  T+ +  R   +L     +V  L   LSQ +R   L   ++   
Sbjct: 382 VALVTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAEL 441

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            + I+TD+AARG+D+  +  VI+ ++ ++ +  +HR GRT RAGR G SV
Sbjct: 442 DLLISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSV 491


>gi|291618455|ref|YP_003521197.1| SrmB [Pantoea ananatis LMG 20103]
 gi|291153485|gb|ADD78069.1| SrmB [Pantoea ananatis LMG 20103]
          Length = 442

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 169/339 (49%), Gaps = 8/339 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+GY   T++Q A + P  R     V    G GK         ST      R    +
Sbjct: 18  ALQEKGYTRPTAIQAAAIPPRWRAATFWVRHLPGPGKPPHIYYRCCST--CSIFRARSLA 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             + L + PTRELA+QV  +   L   T + +A   GGV+             +VV T G
Sbjct: 76  RRVFLILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PA 192
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGEH 195

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           I   A+    + V +      R+   I    +RA    L  +   +V++L+      +IV
Sbjct: 196 IKDFAERLLNEPVELEADPSRRERKKIQQWYHRAD--DLEHKTKLLVHLLKQPEVTRSIV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F   R  +      L +   +   L GE+ Q +R+ A++ + +GR  V +ATD+AARGID
Sbjct: 254 FVRKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGID 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + D+  VI+ ++    +  LHR GRTGRAGRKG+++ ++
Sbjct: 314 VDDVSHVINFDMPRTADTYLHRIGRTGRAGRKGIAISLV 352


>gi|311248993|ref|XP_003123418.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Sus scrofa]
          Length = 453

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 181/339 (53%), Gaps = 13/339 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + +       L
Sbjct: 89  GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVT------VL 142

Query: 79  AIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGTPGRLC 136
            +  TRELA Q+ +E E +      V V+V  GG+S+ ++   L+ N  H+VVGTPGR+ 
Sbjct: 143 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRIL 202

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
             +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S  I  
Sbjct: 203 ALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRP 262

Query: 196 LAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           + + + +D + V +  E +   H    Y  V +  S+++  + ++L        ++F  +
Sbjct: 263 VCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVVIFVKS 321

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
                   ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+D+  +
Sbjct: 322 VQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 381

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
            +V + ++  + +  LHR  R GR G KG+++ FV  +N
Sbjct: 382 NIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 420


>gi|170763913|ref|ZP_02635037.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712566|gb|EDT24748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 407

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 172/324 (53%), Gaps = 9/324 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           T +QE  +   L+ K+V+  A+TG+GKT+A+ L +   +    +         A+ ++PT
Sbjct: 28  TDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSKNEMQ------AIILSPT 81

Query: 84  RELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
            EL VQ+   L  L    G  +     +G  ++ R+   L+N  HI+VGT GR+ + I  
Sbjct: 82  HELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNKPHILVGTTGRILELINK 141

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K +  + +K +V+DE D++LD     D++ ++ S P+  + L+FSAT++      A    
Sbjct: 142 KKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLIFSATMNEKALETADELI 201

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRF 260
             +  +   + N+ + +I++    V L D+ + +  ++   G  K  IVF +   +V   
Sbjct: 202 GTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGDEKKIIVFINNSYNVHNV 261

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV+ARG+D+     +++ +
Sbjct: 262 IQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDVSARGLDIKGATHIVNLD 321

Query: 321 LSSNPENLLHRSGRTGRAGRKGMS 344
           +  N +N LHR GR GRAG KG +
Sbjct: 322 IPMNSQNYLHRVGRVGRAGEKGFA 345


>gi|307182249|gb|EFN69580.1| ATP-dependent RNA helicase DDX55 [Camponotus floridanus]
          Length = 589

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/436 (29%), Positives = 218/436 (50%), Gaps = 33/436 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  ++++T VQ A +   L  KDV   A TGSGKT+AF + L   L    D++   
Sbjct: 19  KTLRQLRFLDMTPVQAACIPLLLSGKDVAAEAVTGSGKTLAFLVPLLEILQKRPDKWKTI 78

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGAHIVVGT 131
               A+ I+PTRELA Q+   LE    K   +  V  +GGV++  +  +L+ G +I+V T
Sbjct: 79  EVG-AIIISPTRELATQISEILEKFLEKLPSLKQVLLVGGVTLKEDAENLKKGVNIIVAT 137

Query: 132 PGRL------CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           PGRL      C  I    L I  L+ +VLDEAD +LDLGF   ++ IL   P+ RR  +F
Sbjct: 138 PGRLEDILSNCSSI-NLNLCIKSLEFLVLDEADRLLDLGFSATLDSILSYLPRLRRTGLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRYHG 243
           SAT +  +  L +   ++   V +  ++   + ++      +V    + + +++ +R  G
Sbjct: 197 SATQTKELQQLIRAGLRNPALVVVKEKSNISTPVNLNNSYTIVQPEHKLSIMIDFIRSIG 256

Query: 244 AKNA-IVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            K   ++F ST A V  F++V+   L    V+AL G++ + +R       R     + I 
Sbjct: 257 FKTKYMIFLSTCACVDYFSRVIQVLLPSINVLALHGKM-KSKRYKIFDEFRQAENGILIC 315

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-----------VIP 349
           TDV ARGID+ ++  V+  +  S   + +HR GRT R G +G ++             + 
Sbjct: 316 TDVMARGIDISEINWVLQYDPPSTASSFVHRCGRTARIGNEGNALLFLLETEDAYVDFVK 375

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDV 406
           +N +   +++  + NV+++ E    +  ++++D  R++ D     F+  IQ   K    +
Sbjct: 376 RNQKVELQQIKTKPNVNIIEECLQCMRHLQQKD--RLMFDKANRAFVSYIQSYSKHECSL 433

Query: 407 LLAKHDPE--KIAAGF 420
           +L   D +  K+A GF
Sbjct: 434 ILRLKDIDMGKLAMGF 449


>gi|117645724|emb|CAL38329.1| hypothetical protein [synthetic construct]
          Length = 619

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 206/407 (50%), Gaps = 28/407 (6%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFPLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+  E +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNI 238
           + ++ SATI  +I  LA     + VR+    +N   +++  R +++ + D  +   +  I
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANV--RQIILWVEDPAKKKKLFEI 436

Query: 239 L--RYHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRA 295
           L  +       +VF   +      ++ + +    + +++  E SQ ER N L+ + +G  
Sbjct: 437 LNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKSQIERKNILKGLLEGDY 496

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N    
Sbjct: 497 EVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNN---- 552

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           ++RLF        W+ A  V+        ++L  P   D  + +++K
Sbjct: 553 SKRLF--------WDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQK 591


>gi|192447401|ref|NP_001122187.1| ATP-dependent RNA helicase DDX19A [Danio rerio]
 gi|190337852|gb|AAI62175.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
 gi|190338805|gb|AAI62171.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
          Length = 471

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 126/380 (33%), Positives = 201/380 (52%), Gaps = 39/380 (10%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFG 55
           +K FE +   PQ++ + + E G+   + +QE  L   L E  ++++  +Q+G+GKT AF 
Sbjct: 83  VKTFEELRLKPQLL-KGVYEMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFV 141

Query: 56  LALASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWL---YAKTGVVVAVCIGG 111
           LA+ S          PA      L I+PT ELA+Q G+ +E +   Y +  V +A  + G
Sbjct: 142 LAMLS-------HVDPACKWSQCLCISPTYELALQTGKVIEQMGKFYPE--VTLAYAVRG 192

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDL-GFRDDI 169
              HR  R ++    IV+GTPG + D  I+ K ++   +K  VLDEAD M+   G +D  
Sbjct: 193 ---HRMERGVRIKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQS 249

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID----YRAVL 225
             I    PK  +ML+FSAT   ++   A+    D    NI    R+   +D    Y  + 
Sbjct: 250 IRIQRMLPKGCQMLLFSATFEDSVWKFAERVVPDP---NIIKLKREEETLDTIKQYYVLC 306

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            +  D+ NA+ NI        A++FC TR   +     +++   QV  LSGE+  ++R+ 
Sbjct: 307 NSKEDKFNALCNIYGAITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAA 366

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL----SSNPEN--LLHRSGRTGRAG 339
            ++  RDG+ +V I T+V ARGID+  + +VI+ +L     SNP+N   LHR GRTGR G
Sbjct: 367 VIERFRDGKEKVLITTNVCARGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRFG 426

Query: 340 RKGMSVFVIPQNMQRRAERL 359
           ++G+++ ++  + QR  E L
Sbjct: 427 KRGLAINMV--DSQRSMEIL 444


>gi|326430321|gb|EGD75891.1| DEAD box polypeptide 41 [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 172/352 (48%), Gaps = 11/352 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  + + L  +G    T +Q   L   L  +D++  A TGSGKT+ F L  A  L  E
Sbjct: 188 KLPTCLVDYLDSQGIKTPTPIQMQGLPVALSGRDMIGIAFTGSGKTLCFSLP-AIMLTME 246

Query: 66  ND---RFSPASAPLALAIAPTRELAVQVG---RELEWLYAKTGVV---VAVCIGGVSVHR 116
            +    F     P A  + P+RELA Q     +E   +  K G+    + +C+GGV +  
Sbjct: 247 QEIKMPFQRGEGPYACVLCPSRELARQTFDAVKEYAGVLHKGGMPKLNIVLCMGGVDMRE 306

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +  N  HI V TPGRL D +  K    +  +   +DEAD M+DLGF +DI  I    
Sbjct: 307 QLYECHNIVHIAVCTPGRLIDMLTKKKFTFNVCRYFCMDEADRMVDLGFEEDIRTIFSFF 366

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ ++FSAT+   I   A++   D + VN+        D+      V    +   ++
Sbjct: 367 NGQRQTVLFSATMPTKIRDFAQSALVDPITVNVGRAGAASLDVVQEVEHVRPEAKIVYLL 426

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+       ++F   +A V    + L     Q VA+ G   Q+ER  A++  + G+  
Sbjct: 427 ECLQ-KTPPPVMIFSEKKADVDDIHEYLLLKGVQAVAIHGGKDQEERDMAVKAFKKGQKD 485

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V +ATD+A++G+D   ++ VI+ ++    EN +HR GRTGR+GR G++   I
Sbjct: 486 VLVATDIASKGLDFKGIQHVINFDMPDELENYVHRIGRTGRSGRTGLATTFI 537


>gi|154320684|ref|XP_001559658.1| hypothetical protein BC1G_01814 [Botryotinia fuckeliana B05.10]
 gi|160358675|sp|A6RMZ2|SPB4_BOTFB RecName: Full=ATP-dependent rRNA helicase spb4
 gi|150853503|gb|EDN28695.1| hypothetical protein BC1G_01814 [Botryotinia fuckeliana B05.10]
          Length = 626

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 195/374 (52%), Gaps = 39/374 (10%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+S  G+  +T VQ + +   +  KDV+V A TGSGKT++F + +   LL   +     
Sbjct: 27  DAISSMGFEKMTPVQASTIPLFMGNKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKH 86

Query: 73  SAPLALAIAPTRELAVQVGRELEWLY----------------------AKTGVVVAVCIG 110
               A+ ++PTRELA Q+   L  L                       +   V+  + +G
Sbjct: 87  HVG-AIIVSPTRELATQIHSVLTSLLKFHEPSAEALQPLEEGEKRKPSSTLRVIPQLLLG 145

Query: 111 GVSVHRE--RRDLQNGAHIVVGTPGRLCDHIRGKGLNI--SHLKAVVLDEADEMLDLGFR 166
           G +   +   R L+N  ++++ TPGRL + +    ++   S  + +VLDEAD +LDLGF+
Sbjct: 146 GTTTPAQDLSRFLKNSPNLLISTPGRLLELLSSPHVHCPQSSFEVLVLDEADRLLDLGFK 205

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAK----NYQKDAVRVNIAS--ENRQHSDID 220
           DD++ IL   PK+RR  +FSA++S A+  + +    N  K AV+V  A   +    + + 
Sbjct: 206 DDLQKILGRLPKQRRTGLFSASVSEAVGEIVRVGLRNPVKIAVKVKGAGGGDKMTPASLQ 265

Query: 221 YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALS 275
              +L   + +  A++++L       + +I++ ST A+V  F  +L   L   F +V+L 
Sbjct: 266 MSYLLTPPTHKFPALLSLLSQLEPTPQKSIIYLSTCAAVDYFQPLLEAVLPKQFGLVSLH 325

Query: 276 GELSQQERS-NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           G+     R  N  + +      + + TDVAARG+D+P ++LV+  +  S+P+  LHR GR
Sbjct: 326 GKHPPNVRQRNFSKYVAAVSPTILLTTDVAARGLDIPQVDLVVQIDPPSDPKVFLHRCGR 385

Query: 335 TGRAGRKGMSVFVI 348
            GRAGRKG+SV  +
Sbjct: 386 AGRAGRKGLSVIFL 399


>gi|255072011|ref|XP_002499680.1| predicted protein [Micromonas sp. RCC299]
 gi|226514942|gb|ACO60938.1| predicted protein [Micromonas sp. RCC299]
          Length = 442

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 182/373 (48%), Gaps = 20/373 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P    +AL   G+   T VQ     P    +DVL  A  GSGKT+A+ L      + +
Sbjct: 4   GVPDYFTDALKTLGHKRTTPVQRECWPPACVGRDVLGIAPPGSGKTLAYLLPAVEFAMRD 63

Query: 66  -----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                  +  P   P AL IAPTREL  Q+      L     V      GG S   +  +
Sbjct: 64  ARDNPRKKRDPPGRPSALVIAPTRELTQQIASVCNKLKRAAPVRCVAVYGGASQSEQEDE 123

Query: 121 LQNG---AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L      A +VVGTPGRL   +    L +   + +VLDEAD ML LGF + +E I ++ P
Sbjct: 124 LAQPTSMATLVVGTPGRLLAVMGTGALGLERARLLVLDEADRMLALGFAEQLEQIREALP 183

Query: 178 KK-RRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +  R+ LMFSAT    +  +AK +   K A+   +A+ +    ++D    + A   +   
Sbjct: 184 RPGRQTLMFSATFPKGVRAVAKAWLAPKPAIGDGVAAGD---LNVDQTVHVCAEHKKGRK 240

Query: 235 I---VNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +   +  LR +  ++    +VF +   +V+    +L  H  +V  L GEL Q+ R  AL+
Sbjct: 241 LLKHITELRKNDGRSKSRVLVFANRIKTVNFVGDLLKRHGEKVCTLHGELKQERRDQALK 300

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G++ V +ATDVA RG+D+  LE V++ ++  + E   HR GR GR+GRKG ++   
Sbjct: 301 DFKSGKSPVLVATDVAGRGLDITGLEHVVNWDMPGSVEQYTHRVGRAGRSGRKGAALSFF 360

Query: 349 PQNMQRRAERLFR 361
            +NM   A  L R
Sbjct: 361 TRNMAPIAPDLVR 373


>gi|307178480|gb|EFN67169.1| Spliceosome RNA helicase Bat1 [Camponotus floridanus]
          Length = 425

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 183/346 (52%), Gaps = 13/346 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAEN 66
           P+++  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA    L L EN
Sbjct: 52  PEIL-RAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTEN 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
             +        L +  TRELA Q+ +E E +      V V V  GG+ + ++   L+   
Sbjct: 111 QVY-------VLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVC 163

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+   +R K LN+ HLK  +LDE D+ML+L   R D++ I  S+P  ++++
Sbjct: 164 PHIVVGTPGRILALVRTKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVM 223

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + V +  E +   + +    V +  ++++  +  +L   
Sbjct: 224 MFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVL 283

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +        ++L E  F  + +   ++Q+ER +  Q  +D + R+ +AT+
Sbjct: 284 EFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATN 343

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++ ++
Sbjct: 344 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLV 389


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 175/350 (50%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 493 GYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPVVQYMLVHG--VSPARQRKSY 550

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+AL +APTRELAVQ+  E+  L   T +   V  GG      R   +    I+V  PGR
Sbjct: 551 PIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGT-----RYPQRFEQDILVACPGR 605

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D    + L+ S +K ++LDEAD ML++GF + IE ++ S      +  +R+  MFSAT
Sbjct: 606 LRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVDERQTFMFSAT 665

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
               I  LAK Y ++    + +        +I      V  +++ + ++ I+  H   + 
Sbjct: 666 FPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM 725

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           + +F  T+       + L         + G+  QQ+R  AL+  +     + +ATDVA+R
Sbjct: 726 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 785

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+PD+  V+  +L    ++  HR GRTGRAG KG++     +N +R A
Sbjct: 786 GLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLA 835


>gi|85001586|ref|XP_955506.1| dead box RNA helicase [Theileria annulata strain Ankara]
 gi|65303652|emb|CAI76030.1| dead box RNA helicase, putative [Theileria annulata]
          Length = 654

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 157/314 (50%), Gaps = 14/314 (4%)

Query: 38  KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS--APLALAIAPTRELAVQVGRELE 95
           +D++  +QTGSGKT+ F L     LLA+     P     P+ L ++PTREL VQ+  E +
Sbjct: 315 RDIIGVSQTGSGKTLTFLLPGLLHLLAQ----PPVGKGGPIMLVLSPTRELCVQIAEEAK 370

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
                  + +    GG     + R++QNGA I+V TPGRL +++    + ++ +   V+D
Sbjct: 371 PYSRLLNLRLIPIYGGTPKLSQVREIQNGAEIIVATPGRLLEYLSTGAIKLNRVSYFVMD 430

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD MLD+GF   I  I+      R+ LMFSAT    I  LA  +  +        +N +
Sbjct: 431 EADRMLDMGFEPQIRKIMGQIRPDRQTLMFSATWPSEIKRLASEFYLELTANPNIKQNFE 490

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
             +        +   +DN    +      K  ++F   ++   + T  L    F+  +L 
Sbjct: 491 FPN--------SYEVKDNLFDFLGSLAPEKKVLIFSDLKSFADQLTSALRYRRFRAYSLH 542

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q +R   L M R G   + +ATDVAARG+D+ D++ VI+ ++  +  + +HR GRT
Sbjct: 543 GNKTQNQRERILNMYRSGEFNILVATDVAARGLDIKDIDYVINLDVPKSLLDYIHRIGRT 602

Query: 336 GRAGRKGMSVFVIP 349
           GR   KG S+   P
Sbjct: 603 GRGNNKGESLLYFP 616


>gi|303317020|ref|XP_003068512.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108193|gb|EER26367.1| ATP-dependent RNA helicase DBP8, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 536

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/361 (31%), Positives = 192/361 (53%), Gaps = 26/361 (7%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P ++G +LS       T++Q A +   L+ +D +  ++TGSGKTVAF   +        D
Sbjct: 115 PWLVG-SLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRW--SED 171

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F       A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   L    H+
Sbjct: 172 PF----GIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGSEMRPQAIALSTRPHV 227

Query: 128 VVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLG---FRDDIEFILDSSPKK- 179
           V+ TPGRL DHI+  G      ++ ++ VVLDEAD +L  G      D+E  L + P   
Sbjct: 228 VIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLLASGPGSMLPDVETCLSAVPSST 287

Query: 180 -RRMLMFSATISPAITTL-AKNYQKDAVRV---NIASENRQHSDIDYRAVL--VALSDRD 232
            R+ L+F+AT++P +  L +    KD + +    I++EN        +     V ++ R+
Sbjct: 288 SRQTLLFTATVTPEVRALKSMPRSKDRLHIFVTEISTENNTTIPPTLKQCYLQVPMTHRE 347

Query: 233 NAIVNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            A +++L     + +K AI+FC+   +     ++L     +V +L   L Q ER++ L  
Sbjct: 348 -AFLHVLLSTDANSSKPAIIFCNRTKTADLLDRLLRRLGHRVTSLHSLLPQSERTSNLAR 406

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R   AR+ +ATDVAARG+D+P + LV++ ++  NP++ +HR GRT RAGR+G ++ ++ 
Sbjct: 407 FRASAARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRTARAGREGEAITLVG 466

Query: 350 Q 350
           Q
Sbjct: 467 Q 467


>gi|313227809|emb|CBY22958.1| unnamed protein product [Oikopleura dioica]
          Length = 862

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/345 (31%), Positives = 182/345 (52%), Gaps = 15/345 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA--PLA 77
           +   T VQ+A +   +  +D++  AQTGSGKT A+ L + + L+ +  +  PA    P  
Sbjct: 355 FQTPTPVQKASIPATMLGRDIMACAQTGSGKTAAYLLPILNDLMEQGIKAEPAHRQFPQV 414

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDL-QNGAHIVVGTPGRL 135
           L I+PTRELA+Q+  +   L+AK   +VA C+ GG  V    + + ++G ++++GTPGR+
Sbjct: 415 LIISPTRELAIQIYDQCR-LFAKDSRIVAQCLYGGTDVRFIHQKISESGCNVLIGTPGRI 473

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISP 191
            D +  + L ++ L+  VLDEAD MLD+GF   ++ +        P KR+ LMFSAT   
Sbjct: 474 NDFLEREYLGLNKLQYFVLDEADRMLDMGFGPIMKQLATGYRMPRPGKRKTLMFSATFPQ 533

Query: 192 AITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRY--HGAKN 246
            I   A ++   + + + +       +D+    +++    S +   +  +++      + 
Sbjct: 534 TIQQFAADFMDSEYLFIKVGVVGGACADVSQEVLIIGSEESKKSGKLEELIKEVAETRQR 593

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+        +L++      ++ G   Q ER +AL   R G   + +AT VAAR
Sbjct: 594 TLVFVETKIKADFIACMLSQTNVPTTSIHGGRLQPERESALADFRSGVCPILVATSVAAR 653

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQ 350
           G+D+P++E VI+ EL    E  +HR GRTGR G  G S  F  P+
Sbjct: 654 GLDIPEVEHVINYELPREIEEYVHRIGRTGRCGNLGKSTSFYDPE 698


>gi|225448554|ref|XP_002273715.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 595

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 194/365 (53%), Gaps = 30/365 (8%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL++ G+   T VQ A +      KDV V A TGSGKT+AF + L   L     R S A
Sbjct: 33  EALTQSGFHFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEIL----RRASSA 88

Query: 73  SAP---LALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQN-GAHI 127
             P   L + ++PTREL+ Q+    + ++     V   + +GGV V  + + ++  GA++
Sbjct: 89  PKPHQVLGVILSPTRELSSQIYNVAQPFISTLPNVKSVLLVGGVEVKSDLKKIEEEGANL 148

Query: 128 VVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++GTPGRL D + R   L+  +L+ ++LDEAD +LD+GF+  I  I+   PK RR  +FS
Sbjct: 149 LIGTPGRLYDIMERMDVLDFRNLEILILDEADRLLDMGFQKQITSIIARLPKLRRTGLFS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSD---------------IDYRAVLVALSDR 231
           AT + A+  L+K   ++ VRV + +E +  +D               ++   +      +
Sbjct: 209 ATQTEAVEELSKAGLRNPVRVEVRAEAKSLNDSVSSQQLASSKTPSGLNIEYLECEADKK 268

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNAL 287
            + +V++L  + +K  I++  T A V  +  +L        F ++ L G++ Q  R  AL
Sbjct: 269 PSQLVDLLIKNKSKKIIIYFMTCACVDYWGVILPRLSVLKGFSLIPLHGKMKQTAREKAL 328

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VF 346
                  + + + TDVAARG+D+P ++ ++  +   +P   +HR GRT R GR+G + VF
Sbjct: 329 ASFTSLSSGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARMGRQGSAVVF 388

Query: 347 VIPQN 351
           ++P+ 
Sbjct: 389 LLPKE 393


>gi|145349792|ref|XP_001419312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579543|gb|ABO97605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 481

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/356 (31%), Positives = 183/356 (51%), Gaps = 12/356 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++P  Q    AL E  +  +T++Q A L   L  +DVL +A+TGSGKT+A+ + L
Sbjct: 1   MRKFAHLPISQATKAALRECKFKEMTAIQRATLPHALCGRDVLGAAKTGSGKTLAYVVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L     ++       AL I+PTRELA+Q+ + L  + A+  +   + IGG  V  E 
Sbjct: 61  IESLW--RKKWGRQDGVGALVISPTRELAIQIFQCLTKVGARHTMSAGLLIGGKDVQEEA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             + N  +I+V TPGRL  H+      +   L+ +VLDEAD MLDLGF   +  I+D+ P
Sbjct: 119 NRV-NKMNILVCTPGRLLQHMDETPMFDCVTLQMLVLDEADRMLDLGFTKTLNAIIDNLP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAI 235
           K R+ L+FSAT + ++  LA+   KD   +++ +E+   +   +       AL  +   +
Sbjct: 178 KNRQTLLFSATQTKSVKDLARLGLKDPEYLSVHAESVHSTPPKLQQMVTTCALEKKIEVL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS---GELSQQERSNALQMMRD 292
            + ++ H     +VF S+   V +F   + + +   V L    G L Q  R        +
Sbjct: 238 WSFIKTHLNAKTLVFFSSCKQV-KFVYEIFKRMRPGVPLQCIHGRLKQARRQGVFYNFCN 296

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +  V  ATDVA+RG+D P ++ V+ A+   +    +HR GRT R    G  + ++
Sbjct: 297 AKETVLFATDVASRGLDFPSVDWVVQADCPEDVATYIHRVGRTARYTAAGKGLLML 352


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/350 (32%), Positives = 174/350 (49%), Gaps = 19/350 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 424 GYKKPTPVQRYGIPVALAGSDLMACAQTGSGKTAAFLIPVVQYMLVHG--VSPARQRKSY 481

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+AL +APTRELAVQ+  E+  L   T +   V  GG      R   +    I+V  PGR
Sbjct: 482 PIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGT-----RYPQRFEQDILVACPGR 536

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D    + L+ S +K ++LDEAD ML++GF + IE ++ S      +   R+  MFSAT
Sbjct: 537 LRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASRYTDMPTVDDRQTFMFSAT 596

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
               I  LAK Y ++    + +        +I      V  +++ + ++ I+  H   + 
Sbjct: 597 FPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDNEKMDRLLQIIYGHEMSDM 656

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           + +F  T+       + L         + G+  QQ+R  AL+  +     + +ATDVA+R
Sbjct: 657 VLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALEDFKQKVTPILVATDVASR 716

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           G+D+PD+  V+  +L    ++  HR GRTGRAG KG++     +N +R A
Sbjct: 717 GLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFYNRNNRRLA 766


>gi|302818592|ref|XP_002990969.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
 gi|300141300|gb|EFJ08013.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
          Length = 421

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/348 (33%), Positives = 176/348 (50%), Gaps = 26/348 (7%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE----NDRFSPASAPLALA 79
           T VQ+  +   L  +D++  AQTGSGKT AF   +   +L E     +     S PLAL 
Sbjct: 37  TLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIEGILREPVPGREGRRRVSIPLALI 96

Query: 80  IAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVH-------RERRDLQNGAHIVV 129
           ++PTRELA Q   EL    + + +       C              R   D   G  I+V
Sbjct: 97  LSPTRELAQQASIELSLPISFSFIADEAFKFCYQTGVRVGVVYGGTRLWSDNLGGVDILV 156

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----PKKRRMLMF 185
            TPGRL D +  + + +  LK + LDEAD MLD+GF   I  I++ S     + R+ LMF
Sbjct: 157 ATPGRLNDLLDREMVELQKLKYLTLDEADRMLDMGFEPQIRRIVEESGMPGAELRQTLMF 216

Query: 186 SATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---IVNILRY 241
           SAT    I  LA  + +KD V + I       S I+   + V  + + +    +++  + 
Sbjct: 217 SATFPKKIQRLAGEFLRKDYVFLAIGEVGSSTSRIEQEVIFVQRNQKYDCLGMVIDRQQM 276

Query: 242 HGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           HG KN     +VF  T+         L    +  +A+ G+ +Q+ER  AL+  + G   +
Sbjct: 277 HGTKNNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAIHGDKTQEERRRALKSFKSGSTPL 336

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +AT+VA+RGID+PD+  VI+ +L +N ++ +HR GRTGRAG++G + 
Sbjct: 337 LVATEVASRGIDIPDVSHVINFDLPTNIDDYVHRIGRTGRAGKRGFAT 384


>gi|242032643|ref|XP_002463716.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
 gi|241917570|gb|EER90714.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
          Length = 623

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 193/369 (52%), Gaps = 22/369 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +P  ++  +A+ E  Y +LT +Q   +   L  KDV+ +A+TGSGKT+AF   + 
Sbjct: 127 KLFSELPISELTAKAIREMNYTHLTQIQARSIPHLLEGKDVMGAAKTGSGKTLAF--LIP 184

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQ---VGRELEWLYAKTGVVVAVCIGGVSVHR 116
           +  L  + RFS  +    + + PTRELA+Q   V +EL   +++T   +   IGG +   
Sbjct: 185 AIELLYHLRFSSRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQT---LGYVIGGNNRRS 241

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           E   L  G +++V TPGRL DH++  K      LK +V+DEAD +L+  F +D++ I   
Sbjct: 242 EADQLAKGVNLLVATPGRLLDHLQNTKSFIYKRLKCLVIDEADRILEQNFEEDMKQIFKR 301

Query: 176 SPKKRRMLMFSATISPAITTLAK-NYQKD------AVRVNIASENRQHS--DIDYRAVLV 226
            P+ R+ ++FSAT +P +   AK +++K+       V V +  +  + +   +     ++
Sbjct: 302 LPQNRQTVLFSATQTPEVEKFAKLSFEKNEESKEKPVYVGVDDDKSKATVEGLQQGYCVI 361

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +   R   +   L+    K  +VF S+  SV    ++L         + G+  QQ+R+  
Sbjct: 362 SSEKRFLVLYAFLKKKQNKKIMVFFSSCNSVKFHAELLNFLGIDCSDIHGKQKQQKRTTT 421

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMS 344
                     + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R   G+    
Sbjct: 422 FFSFCKAEKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSAL 481

Query: 345 VFVIPQNMQ 353
           +F++P+ ++
Sbjct: 482 LFLLPEELK 490


>gi|73953220|ref|XP_865308.1| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 2 [Canis familiaris]
          Length = 590

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 174/351 (49%), Gaps = 41/351 (11%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
             P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGVSVHRE 117
             R  FS    P  L I P+RELA Q    LE+        +   +  A+CIGG+SV  +
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I     
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFK 366

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+   I   AK+     V +N+            RA   +L      ++ 
Sbjct: 367 GQRQTLLFSATMPKKIQNFAKSALVKPVTINVG-----------RAGAASLD-----VIQ 410

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            + Y   +  +V+                 L + +  +     +ER+ A++  R+G+  V
Sbjct: 411 EVEYVKEEAKMVY-----------------LLECLQKTPPPVSEERTKAIEAFREGKKDV 453

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I
Sbjct: 454 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFI 504


>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142982588|sp|A1D1R8|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
 gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 819

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 174/350 (49%), Gaps = 15/350 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 305 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLL-- 362

Query: 66  NDRFSPASAPLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              F P   P +    + PTRELAVQ       L   T +     +GG S+  +   L+ 
Sbjct: 363 ---FRPRKVPTSRVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKK 419

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + P+ R+ 
Sbjct: 420 RPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQT 479

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-- 240
           ++FSAT++ ++  L +      VR+ + S+     ++    V +     D  +  +L   
Sbjct: 480 MLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLC 539

Query: 241 ---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y G    IVF   +    R   V      +   L G +SQ++R  +++  R+G+   
Sbjct: 540 NEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAF 597

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +
Sbjct: 598 LLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTI 647


>gi|224043524|ref|XP_002197738.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Taeniopygia
           guttata]
          Length = 817

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 174/339 (51%), Gaps = 8/339 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E  Y  +T +Q   +   L+ KDVL +A+TGSGKT+AF +     L  +  +++ A  
Sbjct: 26  LQESQYRVVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRQ--QWTSADG 83

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
              L I+PTRELA Q  + L  +         + IGG  +  E   + +  ++++ TPGR
Sbjct: 84  LGVLIISPTRELAYQTFKVLRKVGKNHEFSAGLIIGGKDLKEESERIHH-INMLICTPGR 142

Query: 135 LCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           L  H+        S L+ ++LDEAD +LD+GF D +  I+++ PKKR+ L+FSAT + ++
Sbjct: 143 LLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLLFSATQTKSV 202

Query: 194 TTLAKNYQKDA--VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
             LA+   KD   V V+  ++    + +D   V+  L  + N + + LR H  K  IVF 
Sbjct: 203 KDLARLSLKDPEYVWVHEKAKFSTPATLDQNYVVCELQQKVNMLYSFLRTHLKKKTIVFF 262

Query: 252 STRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           S+   V    +V  +      V+AL G+  Q +R          +A V  ATD+AARG+D
Sbjct: 263 SSCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAARGLD 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            P +  VI  +   +    +HR GRT R    G ++ V+
Sbjct: 323 FPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVL 361


>gi|114571726|ref|XP_001143546.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 3 [Pan
           troglodytes]
          Length = 619

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 204/403 (50%), Gaps = 26/403 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +    L E
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE 268

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 +  P AL + PTRELA+Q+ R+  E +     +   + +GG+ +  +   LQ  
Sbjct: 269 ------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   + ++
Sbjct: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENVPNDCQTIL 382

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL--R 240
            SATI  +I  LA     + VR+    +N   +++  R +++ + D  +   +  IL  +
Sbjct: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANV--RQIILWVEDPAKKKKLFEILNDK 440

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +VF   +      ++ + +    + +++  E SQ ER N L+ + +G   V +
Sbjct: 441 KLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVV 500

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N    ++RL
Sbjct: 501 STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNN----SKRL 556

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           F        W+ A  V+        ++L  P   D  + +++K
Sbjct: 557 F--------WDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQK 591


>gi|89100489|ref|ZP_01173351.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
 gi|89084832|gb|EAR63971.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
          Length = 436

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 179/349 (51%), Gaps = 13/349 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           +E  P +I EA+ + G+   T +QE ++   L+    +  +QTG+GKT ++ L +     
Sbjct: 9   YELKPFII-EAVKKLGFYEPTEIQERLIPIILKGDSAIGQSQTGTGKTHSYILPILQ--- 64

Query: 64  AENDRFSPASAPL-ALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRER 118
               +  P+   + A+  APTRELA Q+ +E+    E       +   + IGG    R  
Sbjct: 65  ----KIDPSRQGVQAVITAPTRELATQIHKEVLKVTEQADGDEEISSKLFIGGTDKQRTI 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +VVGTPGR+ D ++   L +     +V+DEAD MLD+GF +D++ +    P+
Sbjct: 121 EKLKVQPQVVVGTPGRINDLVKENALLVHTASMLVVDEADLMLDMGFLEDVDQVAGKMPE 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K +ML+FSATI   +    K Y ++   V I  +    + I++  +     ++   +   
Sbjct: 181 KLQMLVFSATIPEKLKPFLKKYLENPKFVQIEPKQIAAAKIEHYLLPSKHKNKTEIVFRA 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +T+         L +   +V  + G+LS +ER   ++ + D   +  
Sbjct: 241 LEAFNPYLAIVFTNTKKKADEVADALMQKGLKVGRIHGDLSPRERKKMMKQIMDLEFQYI 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +ATD+AARGID+  +  VI+ EL ++ +  +HR GRT RAG  G+++ +
Sbjct: 301 VATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGSSGIALTI 349


>gi|1399945|gb|AAB03337.1| RNA helicase GLH-2 [Caenorhabditis elegans]
 gi|1405387|gb|AAB03510.1| GLH-2 [Caenorhabditis elegans]
          Length = 974

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 37/381 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + + L+ E
Sbjct: 558 NLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIMARLIDE 617

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ND  +       P  + + PTREL  Q+  E      +T + +    GG++V   +  ++
Sbjct: 618 NDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIE 677

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILD--SSPKK 179
            GA I+VGT GR+        + +   +  VLDEAD M+D +GF  DI+ I++  S PKK
Sbjct: 678 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKK 737

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRV----NIASENRQHSDIDYRAVLVAL----- 228
             R+ LMFSAT   ++   A+N+ K+   +     I + N+         VL        
Sbjct: 738 ENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANK--------CVLQEFEKCDR 789

Query: 229 SDRDNAIVNIL-----RYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           S++ + ++ IL      Y   KN+       IVF S RA       +L+      + + G
Sbjct: 790 SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHG 849

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTG
Sbjct: 850 AREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 909

Query: 337 RAGRKGMSVFVIPQNMQRRAE 357
           R G  G +   I ++    +E
Sbjct: 910 RVGNAGRATSFISEDCNLLSE 930


>gi|55662101|emb|CAH70532.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Homo sapiens]
 gi|55958521|emb|CAI16565.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Homo sapiens]
          Length = 775

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 372

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 492

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 493 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 612

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 613 IHRIGRTARIGCHGSSLLIL 632


>gi|312221692|emb|CBY01632.1| hypothetical protein [Leptosphaeria maculans]
          Length = 308

 Score =  160 bits (404), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 142/252 (56%), Gaps = 5/252 (1%)

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
            V    CIGG +V  + R L  G H+V GTPGR+ D IR + L   ++K +VLDEADE+L
Sbjct: 2   NVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELL 61

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
           + GFR+ I  +    P   ++++ SAT+   +  +   +  D VR+ +  +      +  
Sbjct: 62  NRGFREQIYDVYRYLPPATQVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGL-- 119

Query: 222 RAVLVALSDRD---NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +   +A+   +   + + ++        A++FC+TR  V   T  + E  F V ++ G++
Sbjct: 120 KQYFIAIEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDM 179

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ER + +Q  R   +RV I+TDV ARGID+  + LVI+ +L SN EN +HR GR+GR 
Sbjct: 180 PQRERDSIMQDFRQANSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRF 239

Query: 339 GRKGMSVFVIPQ 350
           GRKG+++  + Q
Sbjct: 240 GRKGVAINFVTQ 251


>gi|322780836|gb|EFZ10065.1| hypothetical protein SINV_10370 [Solenopsis invicta]
          Length = 582

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 125/435 (28%), Positives = 222/435 (51%), Gaps = 31/435 (7%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L +  + N+T VQ A +   L  KDV V A TGSGKT+AF + L   L   ++++   
Sbjct: 19  KTLKQLRFFNMTPVQAACIPLLLNGKDVAVEAVTGSGKTLAFLIPLLEILQKRSEKWKIM 78

Query: 73  SAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               A+ ++PTRELA Q+   L E+L     +   + +GGV++ ++   L+ GA+I+V T
Sbjct: 79  ETG-AIIVSPTRELATQISEILGEFLKEIPSLKQVLLVGGVTLKKDVETLKKGANIIVAT 137

Query: 132 PGRLCDHIRGK---GLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           PGRL D +  +   GLN  +  L+  VLDEAD +LDLGF   ++ IL   P+ RR  +FS
Sbjct: 138 PGRLEDVLSNRNSIGLNLCVKSLEFFVLDEADRLLDLGFSVTLDSILSYLPRLRRTGLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA--VLVALSDRDNAIVNILRYHGA 244
           AT +  +  L +   ++   + +  ++   + I+ +    +V    +   +++ +R  G 
Sbjct: 198 ATQTKQVQQLIRAGLRNPALIVVKEKSNISTPINLKNNFTIVQPEYKLPVMIDFIRSIGF 257

Query: 245 KNA-IVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +   ++F  T A V  F++V+   L    V+AL G++ + +R       R  ++ + I T
Sbjct: 258 ETKYMIFLPTCACVDYFSRVIQAVLPSINVLALHGKM-KSKRYKVFDKFRSAQSGILICT 316

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-----------VIPQ 350
           DV ARGID+ +++ V+  +      + +HR GRT R G +G ++             I +
Sbjct: 317 DVMARGIDISEIDWVLQYDPPCVASSFVHRCGRTARIGNEGNALLFLLETESAYVDFIKR 376

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVL 407
           N +    ++ RE +   V E    +  ++++D  R++ D     F+  +Q   K   +++
Sbjct: 377 NQKVELHQMERELDKDTVDECLQCMRQMQQKD--RLVFDKANRAFVSYVQAYSKHECNLI 434

Query: 408 LAKHDPE--KIAAGF 420
           L   D +  K+A GF
Sbjct: 435 LQLKDIDLGKLAMGF 449


>gi|3132829|gb|AAC16391.1| nuclear RNA helicase [Rattus norvegicus]
          Length = 427

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 183/344 (53%), Gaps = 13/344 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N + S   
Sbjct: 58  AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVS--- 114

Query: 74  APLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQ-NGAHIVVGT 131
               L +  TRELA Q+  E E +      V V+V  GG+S+ ++   L+ N  H+VVGT
Sbjct: 115 ---VLVMCHTRELAFQISTEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGT 171

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGR+   +R + LN+ ++K  VLDE D+ML+ L  R D++ I   +P +++ +MFSAT+S
Sbjct: 172 PGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231

Query: 191 PAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             I  + + + +D + V +  E +   H    Y  V +  S+++  + ++L        +
Sbjct: 232 KEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQY-YVKLKDSEKNRKLFDLLDVLEFNQVV 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT++  RG+
Sbjct: 291 IFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQN 351
           D+  + +V + ++  + +  LHR  R GR G KG++V FV  +N
Sbjct: 351 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEN 394


>gi|71006426|ref|XP_757879.1| hypothetical protein UM01732.1 [Ustilago maydis 521]
 gi|74703402|sp|Q4PDT1|DBP3_USTMA RecName: Full=ATP-dependent RNA helicase DBP3
 gi|46097315|gb|EAK82548.1| hypothetical protein UM01732.1 [Ustilago maydis 521]
          Length = 585

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 169/338 (50%), Gaps = 17/338 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--- 67
           + + L  +G+   T +Q       L+ KDV+  A+TGSGKT AFGL     L+ ++    
Sbjct: 170 VKKTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGLPALQHLVTKHKVLD 229

Query: 68  ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + +  +    L IAPTRELA+Q    +  L    G+ +    GGVS   + R L   
Sbjct: 230 SGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQS 289

Query: 125 --AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKK 179
               IVVGTPGR+ D  R   L++S +  +VLDEAD MLD GF  DI  I+    S  + 
Sbjct: 290 PPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDIRAIIGMCKSREEG 349

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-----RQHSDIDYRAVLVALSDRDNA 234
           R   MFSAT  PA+  LA+++    VRV + S+      R    ++  A   A   R N 
Sbjct: 350 RHTSMFSATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEVLADGYAKERRLND 409

Query: 235 IVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +    +K+ I +F   +    R  + L    F+V  + G+L Q ER  +L+  +  
Sbjct: 410 FLRSVNAQRSKDKILIFALYKKEAQRIEQTLRRGGFKVSGIHGDLGQNERIASLERFKSA 469

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
              + +ATDVAARG+D+P++E V++       E+ +HR
Sbjct: 470 ETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHR 507


>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
 gi|160380649|sp|A6RUH2|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
 gi|150846532|gb|EDN21725.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
          Length = 801

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 173/340 (50%), Gaps = 13/340 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL     + P   
Sbjct: 283 LATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLL-----YRPKKV 337

Query: 75  PLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P +    + PTRELA+Q       L + T +   + +GG+S+  +  +L+    +++ TP
Sbjct: 338 PTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATP 397

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT+S 
Sbjct: 398 GRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSATMSS 457

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK----NA 247
           ++  L +      VR+ + S+      +  +  +     R+   +  L Y  A       
Sbjct: 458 SVDNLIRVGLNRPVRLLVDSQKSTAGTL-VQEFIRLRPGREGKRMGYLLYLCANVYTDRV 516

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   +    R   +      +   L G +SQ++R  +++  RDG+A   +ATD+A+RG
Sbjct: 517 IVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRG 576

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +D+  ++ VI+ E   + +  LHR GRT RAGR G +  +
Sbjct: 577 LDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTI 616


>gi|307103390|gb|EFN51650.1| hypothetical protein CHLNCDRAFT_59143 [Chlorella variabilis]
          Length = 600

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 171/349 (48%), Gaps = 53/349 (15%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           LTSVQEA L   L   DV+  A+TG+GKT+AF +     L     R    S    L ++P
Sbjct: 93  LTSVQEATLPAVLNGGDVMARAKTGTGKTMAFLIPAVEALCRAPPRS--GSGISVLVLSP 150

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA Q+ +E E L         V  GG +++ ER  L     ++V TPGRL DH+   
Sbjct: 151 TRELASQIAKEAEALLRFHPYKAQVVYGGTNINSERNRLAGRCDVLVATPGRLIDHLENS 210

Query: 143 GL--NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
           GL   +  ++ +VLDEAD++L++GFR  IE IL   PK R+ L+FSAT+  A+  +A   
Sbjct: 211 GLAATLQGIRTLVLDEADQLLEMGFRPAIEKILSFLPKSRQTLLFSATMPQAVQQVAGLA 270

Query: 201 QK------DAVRVNIASENRQ--------------HSD-IDYRAVLVALSDRDNAIVNIL 239
            K      D +    ++ N Q              HS  ++    LV + D+  AI ++L
Sbjct: 271 LKKQHAFIDTIGEEDSATNTQARLPAAPREAPRPLHSPRVEQSYALVPMEDQFTAIFSVL 330

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H            A  +   K+++                 R  A +  R   + +  
Sbjct: 331 RRH------------AQTTPDHKIIS----------------ARDKASKEFRTATSAILF 362

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           ++DV+ARG+D PD+ +V+   + S+ E  +HR GRT RAGR G+ + ++
Sbjct: 363 SSDVSARGVDYPDVTMVLQVGIPSSREQYIHRLGRTARAGRAGVGLLIL 411


>gi|39969403|ref|XP_366092.1| hypothetical protein MGG_10312 [Magnaporthe oryzae 70-15]
 gi|149211249|ref|XP_001522999.1| hypothetical protein MGCH7_ch7g1085 [Magnaporthe oryzae 70-15]
 gi|86197040|gb|EAQ71678.1| hypothetical protein MGCH7_ch7g1085 [Magnaporthe oryzae 70-15]
 gi|145009498|gb|EDJ94165.1| hypothetical protein MGG_10312 [Magnaporthe oryzae 70-15]
          Length = 568

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/333 (33%), Positives = 176/333 (52%), Gaps = 28/333 (8%)

Query: 39  DVLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
           DVL  A+TG+GKT+AF L    TLL   + R +  S    L I+PTRELA+Q+ +E E L
Sbjct: 117 DVLAQAKTGTGKTIAFLLPALQTLLRRPSSRGNDVSV---LVISPTRELALQIAKEAEAL 173

Query: 98  YAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN--ISHLKAVVL 154
             +     V   IGG +   E+R +  G  I++GTPGRL DH+  + +   +  +   VL
Sbjct: 174 LQRLPQYKVCTAIGGTNKDAEQRRILRGCQILIGTPGRLMDHLEEQSVAEMLQSVDTFVL 233

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRM----LMFSATISPAIT-----TLAKNYQKDAV 205
           DEAD +LD+GF   ++ I+ + P ++++    ++FSAT++  +       LA +Y+   +
Sbjct: 234 DEADRLLDMGFMPQLKKIVAALPNRQKVPRQGMLFSATVAEHVAKVSSIALAPDYK--FI 291

Query: 206 RVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAKNA-------IVFCSTRASV 257
                 E+  H  +    + V   SD   A+V  LR+  A++A       IVF  T A V
Sbjct: 292 STIPKGESNTHERVPQHLIEVPNFSDTMAALVGALRHELAESANQDEFKAIVFAPTAALV 351

Query: 258 SRFTKVLA--EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
             +  VL    ++ +++ L   ++Q +R+   +  R   A V +ATDV ARG+D P +  
Sbjct: 352 DFYAAVLEGLPNMPRILTLHSRMTQSKRTRVTEDYRKSNATVLVATDVVARGMDFPSVTN 411

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           V    L  + E+ +HR GRT RAG +G   F++
Sbjct: 412 VFQVGLPMDKESYIHRLGRTARAGAEGRGTFIV 444


>gi|224143128|ref|XP_002324856.1| predicted protein [Populus trichocarpa]
 gi|222866290|gb|EEF03421.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 180/338 (53%), Gaps = 14/338 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L   STL     +  P S
Sbjct: 61  SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVL---STL----QQIEPTS 113

Query: 74  AP-LALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA-HIVVG 130
              +AL +  TRELA Q+  E E          VAV  GGV+V   +  L+N   H+VVG
Sbjct: 114 GQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVVVG 173

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+    R K L++ +++  +LDE D+ML+ L  R D++ I   +P  ++++MFSAT+
Sbjct: 174 TPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATL 233

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           S  I  + K + +D + + +  E +   H  + +   L  L +++  + ++L        
Sbjct: 234 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEL-EKNRKLNDLLDALDFNQV 292

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD+  RG
Sbjct: 293 VIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRG 352

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ID+  + +VI+ ++  + +  LHR GR GR G KG+++
Sbjct: 353 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 390


>gi|329767235|ref|ZP_08258762.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
 gi|328836902|gb|EGF86549.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
          Length = 443

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 180/336 (53%), Gaps = 10/336 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A+ + G+ N T +QE + +P L+ K+++  +QTGSGK+ +F L + S L     +
Sbjct: 13  EFVNKAVIDLGFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIFSKLDVAKKK 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   ++ +APTREL+ Q+      +  +++  + + +CIGG  ++R+   + N  H
Sbjct: 73  TQ------SIILAPTRELSRQLYDMALHIASFSEEDIKITLCIGGQDLNRDIERVSNAPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTP R+ +  R   L I  ++++V+DE D M+DLGF +D++ I   + +  + L+FS
Sbjct: 127 IIIGTPTRVLELDRASALAIKEVESLVIDECDMMIDLGFMEDVDKISKRAAENCQFLVFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y K+A  + +  +N +   I+Y  +    S R   +  I        
Sbjct: 187 ATIPAQMNHFLKKYLKNAQYIEV--DNAKFGKIEYILIPEKSSSRLEKLHEITTVINPYL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F + +  V   +  L      V  L G+L+ +ER    + + +      +A+D+ +R
Sbjct: 245 ALIFANKKTEVEEVSSYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTYVVASDLMSR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           GID+  +  VI+  + ++ +  +HR+GRTGRAG  G
Sbjct: 305 GIDIEGVSHVINFNIPNDLDFFIHRAGRTGRAGLSG 340


>gi|223590191|sp|A5DLF4|DBP4_PICGU RecName: Full=ATP-dependent RNA helicase DBP4
 gi|190347685|gb|EDK40007.2| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 13/354 (3%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P   G  + L E  +V+LT +Q+  +   L+ +DV+ +A+TGSGKT+AF + +   
Sbjct: 48  FKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEK 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ EN   +      AL ++PTRELAVQ    L  +         +  GG  V  E+  +
Sbjct: 108 LIREN--ITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERI 165

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++GTPGR+  H+    G+  S+L+ +VLDEAD  LD+GFR  I+ IL   P  R
Sbjct: 166 SR-MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTR 224

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAIVN 237
           + L+FSAT S  +  LA+    +  RV ++S+    S    ++   + ++L+ + + + +
Sbjct: 225 QTLLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVLWS 284

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ-MMRDGRAR 296
            L+ H     +VF S+   V +F       L   ++L     + ++++ L+  M+  RA+
Sbjct: 285 FLKSHLKSKILVFFSSSKQV-QFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRAQ 343

Query: 297 -VCI-ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             C+ ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR+G S+ ++
Sbjct: 344 HACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLML 397


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 173/345 (50%), Gaps = 19/345 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 357 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKHG--VSPARERVSY 414

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q+  E+  L  +T +   V  GG          +N   I+V  PGR
Sbjct: 415 PIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR---FEND--ILVACPGR 469

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D      ++ S +K +VLDEAD ML++GF + IE+++ S         +R+ LMFSAT
Sbjct: 470 LKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSAT 529

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LAK Y ++    + +        +I  + V V  S++ + +  ++      + 
Sbjct: 530 FPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVIYQQKQTDL 589

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +       L         + G+  Q +R  AL+  +DG   + +ATDVA+R
Sbjct: 590 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 649

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P++  VI  +L    ++  HR GRTGRAG KG +     +N
Sbjct: 650 GLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNKN 694


>gi|301765214|ref|XP_002918023.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 406

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 173/352 (49%), Gaps = 58/352 (16%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++  +  V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQRL------FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+   KG N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+        Y+ V              
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK--------YQTV-------------- 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                                      E L Q         + +R  +L   +     + 
Sbjct: 236 ---------------------------EKLQQYYLFIPSKFKSKRLGSLNKFKAKARSIL 268

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q
Sbjct: 269 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 320


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 173/345 (50%), Gaps = 19/345 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 358 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKHG--VSPARERVSY 415

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q+  E+  L  +T +   V  GG          +N   I+V  PGR
Sbjct: 416 PIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR---FEND--ILVACPGR 470

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D      ++ S +K +VLDEAD ML++GF + IE+++ S         +R+ LMFSAT
Sbjct: 471 LKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSAT 530

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LAK Y ++    + +        +I  + V V  S++ + +  ++      + 
Sbjct: 531 FPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVIYQQKQTDL 590

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +       L         + G+  Q +R  AL+  +DG   + +ATDVA+R
Sbjct: 591 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 650

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P++  VI  +L    ++  HR GRTGRAG KG +     +N
Sbjct: 651 GLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNKN 695


>gi|170039659|ref|XP_001847645.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
 gi|167863269|gb|EDS26652.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
          Length = 735

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 186/347 (53%), Gaps = 15/347 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L++  Y   T++Q   + P L+ KD+L +A+TGSGKT+AF + +   L    +R++  
Sbjct: 78  QGLAQGQYRVPTAIQRQSILPALQGKDILAAAKTGSGKTLAFLIPVFEKLYT--NRWTRL 135

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL I PTRELA+Q+   +  +         + IGG ++  E+  L    +I++ TP
Sbjct: 136 DGLGALIITPTRELALQIFETVAKIGKNHDFTTGLIIGGQNLKFEKSRLHQ-LNIIICTP 194

Query: 133 GRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GRL  H+    L + ++LK +VLDEAD  LD+GF+  +  I+++ P  R+ L+FSAT + 
Sbjct: 195 GRLLQHMDTNPLFDCTNLKVLVLDEADRCLDMGFQTAMNAIIENLPTTRQTLLFSATQTK 254

Query: 192 AITTLAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           ++  LA+    D V +  +   E    S +    V V LS++   + + L+ H  +  IV
Sbjct: 255 SVKDLARLNLTDPVYIAPHEKEEYTTPSRLQQNYVTVELSEKLTMLWSFLKSHSKQKIIV 314

Query: 250 FCST----RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI-ATDVA 304
           F +T    R     F K+    L  ++ L G ++Q++R N +      R+ VC+ ATDVA
Sbjct: 315 FFATCKQVRYHYEIFRKLRPSIL--LLPLYGGMNQEKR-NKIYAEFCSRSNVCLMATDVA 371

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQ 350
           +RG+D P +  V+  +   +    +HR+GRT R    G S+ V +PQ
Sbjct: 372 SRGLDFPKVNWVVQLDCPEDATQYIHRAGRTARLNTAGESLLVLLPQ 418


>gi|33340649|gb|AAQ14889.1|AF335568_1 helicain B [Homo sapiens]
          Length = 851

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 185/380 (48%), Gaps = 53/380 (13%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           ++TSVQ+  +   L  +D LV +QTGSGKT+A+ + +  +L A   +   +  P AL + 
Sbjct: 253 SMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLV 312

Query: 82  PTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+Q    ++ L    T +V  V +GG     E+  L+ G +I++ TPGRL DHI+
Sbjct: 313 PTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIK 372

Query: 141 G-KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTL 196
             K ++ S L+ +V DEAD +LDLGF  DI  IL   ++  +KR+ ++ SAT++  +T L
Sbjct: 373 STKNIHFSRLRWLVFDEADRILDLGFEKDITVILNAVNAECQKRQNVLLSATLTEGVTRL 432

Query: 197 AKNYQKDAVRVNIASENRQHSD-----------------IDYRAVLVALSDRDNAIVNIL 239
           A     D V +++  ++    +                 +D  A+  +L      + + L
Sbjct: 433 ADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPPPAGDKLDSFAIPESLKQHVTVVPSKL 492

Query: 240 R-------------YHGAKNAIVFCSTRASV----SRFTKVL--------------AEHL 268
           R             +   +  +VF S+   V    S F + L              A   
Sbjct: 493 RLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFHYSLFLQTLLSSSGAPASGQLPSASMR 552

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
            + + L G + Q+ER+   Q     R  V + TDVAARG+DLP +  ++     S+P   
Sbjct: 553 LKFLRLHGGMEQEERTAVFQEFSHSRRGVLLCTDVAARGLDLPQVTWIVQYNAPSSPAEY 612

Query: 329 LHRSGRTGRAGRKGMSVFVI 348
           +HR GRT R G  G S+ ++
Sbjct: 613 IHRIGRTARIGCHGSSLLIL 632


>gi|332230780|ref|XP_003264573.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Nomascus leucogenys]
          Length = 619

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 205/403 (50%), Gaps = 26/403 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +    L E
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE 268

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNG 124
                 +  P AL + PTRELA+Q+ R+ + L +    +  V  +GG+ +  +   LQ  
Sbjct: 269 ------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLFVGGLPLPPQLYRLQQH 322

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   + ++
Sbjct: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL--R 240
            SATI  +I  LA     + VR+    +N   +++  R +++ + D  +   +  IL  +
Sbjct: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANV--RQIILWVEDPAKKKKLFEILNDK 440

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +VF   +      ++ + +    + +++  E SQ ER N L+ + +G   V +
Sbjct: 441 KLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVV 500

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N    ++RL
Sbjct: 501 STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNN----SKRL 556

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           F        W+ A  V+        ++L  P   D  + +++K
Sbjct: 557 F--------WDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQK 591


>gi|299747561|ref|XP_001837121.2| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
 gi|298407575|gb|EAU84738.2| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
          Length = 599

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 191/403 (47%), Gaps = 62/403 (15%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+  ALS     + T VQ A + P L       +A+TGSGKT+AF L +   LL + 
Sbjct: 133 VSNVLQTALSSMSITSPTEVQAACIPPILAG-----NAKTGSGKTIAFALPILQKLLVD- 186

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +   L     V  +V +GG+ +  +  +L    H
Sbjct: 187 -----PYGIFALVLTPTRELAFQIAEQFAVLGGSVNVRTSVIVGGMDMVSQALELDQRPH 241

Query: 127 IVVGTPGRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           I++ TPGR+ DH++    N  +S +K +VLDEAD +L   F  ++ ++ +  PK R+  +
Sbjct: 242 IIIATPGRIVDHLKSTKGNWDLSRIKFLVLDEADRLLTETFTPELSYLFNVLPKNRQTCL 301

Query: 185 FSATISPAITTLAKNYQKDAV------RVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237
           F+AT++ +I  LA    +         RV  A  + +  S +    +LV    R+  +  
Sbjct: 302 FTATMTLSIENLADAPPRPGKSKPFVHRVKEADPSIETVSTLKQHYILVPSHVREVYLFR 361

Query: 238 ILRY-------------HGAKN--------------------------AIVFCSTRASVS 258
           IL +               AKN                           I+FC   ++ +
Sbjct: 362 ILCHPPESTIHLRRAPPEPAKNLQKPKVGKAKKSKSRTAEEEIEQPPPTIIFCGRASTAA 421

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T +L     +  AL   L+Q+ER ++L + R     V ++TDVAARG+D+ D+ +V++
Sbjct: 422 YLTALLKALGIRSTALHSRLTQRERLSSLSLFRASVVPVLVSTDVAARGLDIEDVAMVVN 481

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +L + PE   HR GRT RAG+ G+++  +    +R  ER+ R
Sbjct: 482 WDLPAEPEEYTHRVGRTARAGKGGVAISFV---TERDEERVLR 521


>gi|115396304|ref|XP_001213791.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|121738779|sp|Q0CNX1|DBP8_ASPTN RecName: Full=ATP-dependent RNA helicase dbp8
 gi|114193360|gb|EAU35060.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 527

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 192/378 (50%), Gaps = 35/378 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K     P +IG +L+       T++Q A +   L+ +D +  ++TGSGKT+AF + +  
Sbjct: 88  FKALNVAPWLIG-SLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQ 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 D F       A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   
Sbjct: 147 KW--AEDPF----GIFAVVLTPTRELALQIYEQFKAISAPQSMKPVLITGGTDMRPQALA 200

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLG---FRDDIEFIL 173
           L    H+V+ TPGRL DHI+  G +    +  ++ VVLDEAD +L  G      D+E  L
Sbjct: 201 LSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLLAPGPGSMLPDVETCL 260

Query: 174 DSSP--KKRRMLMFSATISP---AITTLAKNYQKDAVRVN--------------IASENR 214
            + P   +R+ L+F+AT++P   A+ ++ +   K  V V                A ++ 
Sbjct: 261 SALPPSSERQTLLFTATVTPEVRALKSMPRASTKPPVFVTEIEAGGTTSAGADGAAPKST 320

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
               +    + V ++ R+  +  +L   G   K AI+FC+   +     ++L     +V 
Sbjct: 321 LPPTLKQTYLKVPMTHREAFLHVLLSTDGNAGKPAIIFCNHTKTADLLERLLRRLAHRVT 380

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           +L   L Q ERS+ L   R   AR+ +ATDVA+RG+D+P + LV++ ++  NP++ +HR 
Sbjct: 381 SLHSLLPQSERSSNLARFRASAARILVATDVASRGLDIPSVALVVNYDVPRNPDDYVHRV 440

Query: 333 GRTGRAGRKGMSVFVIPQ 350
           GRT RAGR+G +V ++ Q
Sbjct: 441 GRTARAGRRGEAVTLVGQ 458


>gi|320581342|gb|EFW95563.1| Putative nucleolar DEAD box RNA helicase [Pichia angusta DL-1]
          Length = 742

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 185/351 (52%), Gaps = 9/351 (2%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P        + E  YV +T +Q   +   L+  D+L +A+TGSGKT+AF + +   
Sbjct: 45  FDDLPLTKNTLRGVKESSYVTMTDIQRDSIPLALKGHDILGAAKTGSGKTLAFLIPVIEK 104

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ EN  ++      AL I+PTRELA+Q+   L  +         + IGG     E+  +
Sbjct: 105 LVHEN--WNEFDGVGALIISPTRELAMQIYEVLLKIGKHHSFSAGLVIGGKDYEFEKERI 162

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++GTPGRL  H+ +   LN+++L+ +VLDEAD +LDLGF+  ++ I+ + P +R
Sbjct: 163 -GKMNILIGTPGRLLQHMDQSATLNLTNLQILVLDEADRILDLGFKKTLDDIISNLPPER 221

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT + ++  LA+    +   VN +S+     + ++   V++ L D+ + + + +
Sbjct: 222 QSLLFSATQTKSVQDLARLSLVNPEYVNASSDTSSTPESLEQSYVVIRLQDKLDILWSFI 281

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVL--AEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + H     +VF S+   V    +     +    ++ L G   Q+ R        + R   
Sbjct: 282 KSHLDSKILVFVSSSKQVHFIYEAFRKLQPGISLMKLHGRQKQKARMETTFKFTESRHCC 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ATDV ARG+D P ++ V+  +   +    +HR GR+ RAGR G S+ ++
Sbjct: 342 LFATDVVARGLDFPAIDWVVQLDCPEDVATYIHRVGRSARAGRAGKSLLML 392


>gi|313221766|emb|CBY38854.1| unnamed protein product [Oikopleura dioica]
 gi|313233364|emb|CBY24478.1| unnamed protein product [Oikopleura dioica]
          Length = 422

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 180/337 (53%), Gaps = 12/337 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    L        P  
Sbjct: 54  AIVDCGFEHPSQVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQL-------EPVD 106

Query: 74  APLA-LAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVG 130
             ++ + +  TRELA Q+ +E E +      + VAV  GG+ + ++++ L +N  HIVVG
Sbjct: 107 GNVSVIVMCHTRELAFQISKEYERFSKYMDSMKVAVFFGGMPIEKDKKVLKENCPHIVVG 166

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGR+   IR K L++ ++K  VLDE D+MLD L  R D++ I   +P +++++MFSAT+
Sbjct: 167 TPGRILGLIRSKALSLKNVKHFVLDECDKMLDALDMRRDVQEIFRQTPHEKQVMMFSATL 226

Query: 190 SPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           S  +  + K + +D + V I  E +     +    V +  ++++  + ++L        +
Sbjct: 227 SKEVRPVCKKFMQDPMEVFIDDEAKLTLHGLQQHYVKIKENEKNRKLFDLLDALEFNQVV 286

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  +       + +L E  F  V +   ++Q+ER    Q+ ++ + R+ +AT++  RG+
Sbjct: 287 IFVKSVQRCIALSTLLKEQNFPAVDIHRAMNQEERLQRYQLFKNFQRRILVATNLFGRGM 346

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           D+  + +V + ++  + +  LHR  R GR G KG+++
Sbjct: 347 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 383


>gi|311276036|ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
           scrofa]
          Length = 630

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 192/370 (51%), Gaps = 9/370 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+++ +++ + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 229 FGPYPELM-KSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLN 287

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QVG E    Y+  G+      GG +   + +D+  
Sbjct: 288 SQPVSRGKRNGPGMLVLTPTRELALQVGAECS-KYSYKGLKSVCIYGGGNRKGQIQDIMK 346

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLDLGF   I + +LD  P  R+ 
Sbjct: 347 GVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPD-RQT 405

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRY 241
           +M SAT    I  LA +Y K+ + V + + +    D   + +++   +   ++    L+ 
Sbjct: 406 IMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQS 465

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              K+  IVF S +      +  L+     V +L G+  Q +R  AL   + G+ ++ IA
Sbjct: 466 LSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIA 525

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TD+A+RG+D+ D+  V +     N E  +HR GRTGRAG+ G SV ++ Q+  + A  L 
Sbjct: 526 TDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELI 585

Query: 360 --FREANVSV 367
              + AN S+
Sbjct: 586 EILQRANQSI 595


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 181/351 (51%), Gaps = 10/351 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+++   +    +   + +Q       L   D +  AQTG+GKT+AF L     + 
Sbjct: 277 FYDYPEILS-TIKSNNFTEPSPIQCQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHID 335

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
            +         P  L ++PTRELA Q+  E++  + +   + +VCI GG     +   ++
Sbjct: 336 GQPIPRDKRGGPSCLVLSPTRELAQQIEMEVKKFHYRG--IRSVCIYGGGDRSAQINLVR 393

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++GTPGRL D +     ++  +  +VLDEAD MLD+GF  +I+ IL      R+ 
Sbjct: 394 QGVEIIIGTPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPDRQT 453

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILR 240
           +M SAT  P +  +A  Y +D +R+N+ S + Q  HS +      +   ++ + +++ + 
Sbjct: 454 IMTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHS-VSQLVEFIEQHEKQDRVMDFIS 512

Query: 241 YHGAKNA-IVFCSTRASVSRFTKVLAEH--LFQVVALSGELSQQERSNALQMMRDGRARV 297
                   I+F   + +    +  LA       +  + G+  Q +R  AL+ M+ G ARV
Sbjct: 513 AMAPDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAARV 572

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            IATDVA+RG+D+ DL  V++ +   + E+ +HR GRTGRAGR G ++  +
Sbjct: 573 LIATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGCALTFV 623


>gi|146414812|ref|XP_001483376.1| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 191/354 (53%), Gaps = 13/354 (3%)

Query: 4   FENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P   G  + L E  +V+LT +Q+  +   L+ +DV+ +A+TGSGKT+AF + +   
Sbjct: 48  FKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEK 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ EN   +      AL ++PTRELAVQ    L  +         +  GG  V  E+  +
Sbjct: 108 LIREN--ITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEKERI 165

Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I++GTPGR+  H+    G+  S+L+ +VLDEAD  LD+GFR  I+ IL   P  R
Sbjct: 166 SR-MNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPVTR 224

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAIVN 237
           + L+FSAT S  +  LA+    +  RV ++S+    S    ++   + ++L+ + + + +
Sbjct: 225 QTLLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVLWS 284

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ-MMRDGRAR 296
            L+ H     +VF S+   V +F       L   ++L     + ++++ L+  M+  RA+
Sbjct: 285 FLKSHLKSKILVFFSSSKQV-QFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRAQ 343

Query: 297 -VCI-ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             C+ ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR+G S+ ++
Sbjct: 344 HACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLML 397


>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 836

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 167/333 (50%), Gaps = 7/333 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   L   L  KDV+  A+TGSGK+ AF + L   L   + R         L
Sbjct: 45  GYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEKLKEHSTRV----GLRGL 100

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELA+Q  +  + L   T + V++ +GG  + ++   L +   I+V TPGRL  H
Sbjct: 101 VLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSALASNPDILVATPGRLMHH 160

Query: 139 IRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           ++     N+  ++ VV DEAD + ++GF D +  IL   P  R+ L+FSAT+   +   A
Sbjct: 161 LQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPPNRQTLLFSATLPSVLAQFA 220

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRA 255
           +    +   + +  EN+   ++      V   D+    V+++R    KN   I+F +TR 
Sbjct: 221 RAGLNEPAMIRLDVENKMSENLKMAFFTVRSDDKPAVFVHLVRDFLPKNDQTIIFTATRH 280

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V    ++L  +  +   + GE+ Q  R   +   R G+  + + TDVAARGID+P L  
Sbjct: 281 HVEFLHQLLIANDIESSCVYGEMDQTSRKLNIAKFRAGKTNLLLVTDVAARGIDIPLLNN 340

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           VI+       +  +HR GR  RAG+ G +  ++
Sbjct: 341 VINYSFPPTAKLFVHRVGRAARAGKSGTAFSLL 373


>gi|159110489|ref|XP_001705502.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
 gi|157433587|gb|EDO77828.1| ATP-dependent RNA helicase-like protein [Giardia lamblia ATCC
           50803]
          Length = 656

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 122/444 (27%), Positives = 192/444 (43%), Gaps = 99/444 (22%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V    +  + Y   T +Q+  L   +   D+L  +QTGSGKT AF + +   + 
Sbjct: 133 FDLDPEVYQNTVRAK-YFQPTPIQKHALPTGMVGYDLLACSQTGSGKTCAFIIPILHRIA 191

Query: 64  AENDRF---SPA---------------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            E  +    SP                + P  + ++PTREL  Q  +    L   T ++ 
Sbjct: 192 TEKLKLYTMSPGHHEDRDFRFNAKGSRAYPFCIIMSPTRELVQQTAKASWMLSYGTSILT 251

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG     +R  LQ G  I+V TPGRL D I+   +  ++++ VV DE D MLD+GF
Sbjct: 252 RVAYGGDPSGPQRDALQMGCDILVATPGRLLDFIKQGVVETTYVRFVVFDECDRMLDMGF 311

Query: 166 RDDIEFILDSSPK-----------------KRRMLMFSATISPAITTLAKNY--QKDAVR 206
              I  IL   P                  +R+ L+FSAT    I  LA  +  Q   V 
Sbjct: 312 EPQIRDILHELPPIHHSVQDPSNPDITHQIERQTLLFSATFPKEIKNLAMEFLRQDRLVS 371

Query: 207 VNIASENRQHSDIDYRAVLVALS----------------DRDNAIVNIL----------- 239
           + +      + ++  R VLV  S                D +N ++ +            
Sbjct: 372 ITVGQIGSSNPNLAQRVVLVERSNDKLRLLTEYITGQNADLNNMLIEVYGTDKEQDPSLS 431

Query: 240 ----------RYHGAKNA-----------------------IVFCSTRASVSRFTKVLAE 266
                      ++ A NA                       IVF + ++   R  +   +
Sbjct: 432 TVSSTAGISEEFNEAMNATYPDSHAARHDTLNKDGIIQYQTIVFTNFKSEADRIFRYFDD 491

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             ++V  + G+++Q+ER N L+  + GR  + I TDVA RG+D+P++ LV++ +L  N +
Sbjct: 492 MRYRVAVIHGDMTQKERENNLKYFKAGRTNILIGTDVAQRGLDIPNVRLVLNYDLPGNVD 551

Query: 327 NLLHRSGRTGRAGRKGMSV-FVIP 349
           +  HR GRTGRAGR G++V FV P
Sbjct: 552 DYTHRIGRTGRAGRPGLAVTFVCP 575


>gi|255559126|ref|XP_002520585.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540245|gb|EEF41818.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 323

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ RG   L  +Q+A+L P ++ +D+   A+TG+GKT+AFG+ +   ++  N
Sbjct: 104 IAQEIVSALARRGITKLFPIQKAVLEPAMQGRDLFGRARTGTGKTLAFGIPILDKIIQFN 163

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNGA 125
            +      PLAL +APTRELA QV +E    +     +  +C+ GG  + R+ ++L  G 
Sbjct: 164 AKHGRGRNPLALVMAPTRELARQVEKEF---HESAPSLDTICLYGGTPISRQMKELDYGV 220

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF DDIE I    PK R  ++F
Sbjct: 221 DVVVGTPGRIIDLMKRGSLNLSEIQFVVLDEADQMLGVGFVDDIETIFQRLPKNRHSMLF 280

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS 211
           SAT+   I  L +NY KD + +++ S
Sbjct: 281 SATMPSWIKNLVRNYLKDPLTIDLVS 306


>gi|149182026|ref|ZP_01860512.1| YqfR [Bacillus sp. SG-1]
 gi|148850291|gb|EDL64455.1| YqfR [Bacillus sp. SG-1]
          Length = 434

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 175/337 (51%), Gaps = 6/337 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G++  T +Q+ ++    R +  +  +QTG+GKT ++ L + + +   +    
Sbjct: 14  INEAIERLGFIEPTEIQKKMIPLINRGESAIGQSQTGTGKTHSYLLPILNKINRNSQEVQ 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+  APTRELA Q+ +E+  +  +  +     IGG    R    L+    IVVG
Sbjct: 74  ------AVITAPTRELAQQIYQEILKITNEEEITSRCFIGGTDKQRMIDKLKTQPQIVVG 127

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D ++   L +     +V+DEAD MLD+GF  D++ I    P+K ++L+FSATI 
Sbjct: 128 TPGRINDLVKEGALLVHRADMLVVDEADLMLDMGFIFDVDQIAARMPEKLKILVFSATIP 187

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +    K Y ++    ++  E+    +I +  +     ++D+ + + L       AIVF
Sbjct: 188 EKLKPFLKKYMENPQYAHVEPEHISAKNIKHILLPRKSRNKDDLLYDALSSLNPYLAIVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+A        L     +V  + G+LS +ER   ++ +R    +  +ATD+AARGID+
Sbjct: 248 TNTKAKADEVADYLLSKGMKVGRIHGDLSPRERKKMMKQIRALEYQYIVATDLAARGIDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +  +I+ E+    +  +HR+GRT RAG  G++V +
Sbjct: 308 EGVSHIINYEIPGELDFYIHRTGRTARAGYSGIAVTI 344


>gi|188035877|ref|NP_001026895.2| probable ATP-dependent RNA helicase DDX59 [Homo sapiens]
 gi|74762230|sp|Q5T1V6|DDX59_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59; AltName: Full=Zinc finger HIT
           domain-containing protein 5
 gi|55959939|emb|CAI17056.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 204/403 (50%), Gaps = 26/403 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +    L E
Sbjct: 209 SLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFE 268

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 +  P AL + PTRELA+Q+ R+  E +     +   + +GG+ +  +   LQ  
Sbjct: 269 ------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   + ++
Sbjct: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNIL--R 240
            SATI  +I  LA     + VR+    +N   +++  R +++ + D  +   +  IL  +
Sbjct: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANV--RQIILWVEDPAKKKKLFEILNDK 440

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHL-FQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +VF   +      ++ + +    + +++  E SQ ER N L+ + +G   V +
Sbjct: 441 KLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVV 500

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N    ++RL
Sbjct: 501 STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNN----SKRL 556

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           F        W+ A  V+        ++L  P   D  + +++K
Sbjct: 557 F--------WDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQK 591


>gi|3342758|gb|AAC27683.1| helicase pitchoune [Drosophila melanogaster]
          Length = 663

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 187/341 (54%), Gaps = 9/341 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF   + +  L    RF P +
Sbjct: 184 AIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAF--LIPAVELINKLRFMPRN 241

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               + I+PTREL++Q    L+ L A       + +GG +   E   L  G +I+V TPG
Sbjct: 242 GTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPG 301

Query: 134 RLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           RL DH++        +L+ +++DE D +L++GF ++++ I++  PK+R+ ++FSAT +  
Sbjct: 302 RLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTAR 361

Query: 193 ITTLAK-NYQKDAVRVNIASENRQHSDID--YRAVLVALSD-RDNAIVNILRYHGAKNAI 248
           I  L+K   + + + V +  +N+  + +D   +  +V  S+ R   +   L+ +  K  +
Sbjct: 362 IEALSKLALKSEPIYVGV-HDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVM 420

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TDVAARG+
Sbjct: 421 VFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGL 480

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
           D+P ++ ++  +   +  +++HR GRT R +G  G ++ ++
Sbjct: 481 DIPQVDWIVQYDPPGDQASIIHRVGRTARGSGTSGHALLLM 521


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/345 (32%), Positives = 173/345 (50%), Gaps = 19/345 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA----SA 74
           GY   T VQ   +   L   D++  AQTGSGKT AF + +   +L      SPA    S 
Sbjct: 364 GYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPVVHYILKHG--VSPARERVSY 421

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ +APTRELA+Q+  E+  L  +T +   V  GG          +N   I+V  PGR
Sbjct: 422 PIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPTR---FEND--ILVACPGR 476

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS------SPKKRRMLMFSAT 188
           L D      ++ S +K +VLDEAD ML++GF + IE+++ S         +R+ LMFSAT
Sbjct: 477 LKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASRYTDMPQTTERQTLMFSAT 536

Query: 189 ISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LAK Y ++    + +        +I  + V V  S++ + +  ++      + 
Sbjct: 537 FPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQESEKMDKLFEVIYQQKQTDL 596

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +       L         + G+  Q +R  AL+  +DG   + +ATDVA+R
Sbjct: 597 VLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALRDFKDGITPILVATDVASR 656

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           G+D+P++  VI  +L    ++  HR GRTGRAG KG +     +N
Sbjct: 657 GLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFYNKN 701


>gi|330938107|ref|XP_003305686.1| hypothetical protein PTT_18597 [Pyrenophora teres f. teres 0-1]
 gi|311317192|gb|EFQ86226.1| hypothetical protein PTT_18597 [Pyrenophora teres f. teres 0-1]
          Length = 640

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 220/457 (48%), Gaps = 77/457 (16%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+V  T VQ A +   ++  DV+V A TGSGKT+A+ + +   LL  +    
Sbjct: 22  ILEAVDSMGFVKTTPVQHAAIPMFMKNSDVVVEAVTGSGKTLAYLIPIVERLLRLD---- 77

Query: 71  PASAPL------ALAIAPTRELAVQVGRELEWL---YAKTG------------------- 102
              AP+      A+ I+PTRELA Q+   L  L   +A +                    
Sbjct: 78  ---APIKKHHVGAIIISPTRELATQIHTVLSSLLRFHAPSAALLDPEDEDTDMEDAAPPK 134

Query: 103 ---------VVVAVCIGG--VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH--L 149
                    VV  + +GG         R L++  ++++GTPGRL + +    ++ S    
Sbjct: 135 PTFPPGTLRVVPQLLLGGSVTPAQDLSRFLKSSTNVLIGTPGRLLELLSSPHVHCSQSSF 194

Query: 150 KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
            A+VLDEAD +LDLGF  D++ IL   PK+RR  +FSA++S A+  L +   ++ VR+ +
Sbjct: 195 DALVLDEADRLLDLGFSADLQKILSRIPKQRRTGLFSASVSEAVDQLIRVGLRNPVRIAV 254

Query: 210 ASENRQHSD--------IDYRAVLVAL---------SDRDNAIVNILR--YHGAKNAIVF 250
             + R  S+        I+ R    +L         S +  AI  +L       + +I++
Sbjct: 255 KVKARAASNGTTGEAGAIEDRKTPASLQMSYLVMPASHKLPAIKKVLSSMQPQPQKSIMY 314

Query: 251 CSTRASVSRFTKVLAEHL--FQVVALSGELSQQERS-NALQMMRDGRARVCIATDVAARG 307
            +T  SV  F  VL E L  F +V L G+   + R  N ++ +      + + TDVAARG
Sbjct: 315 MATCFSVDYFQHVLPELLKGFTIVPLHGKHPDKVRKRNFIKFVDSVTPTILLTTDVAARG 374

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL-FREANV 365
           +D+P ++LV+  +  S+P+  +HR GR GRAGRKG+++ F+ P   +   E L  R+  +
Sbjct: 375 LDIPSVDLVLQLDAPSDPKTFIHRCGRAGRAGRKGLALTFLSPGREEDYIEFLRVRQTPI 434

Query: 366 SVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQ 397
           S +  P     A   EA+  R  + +  D    D  Q
Sbjct: 435 SPLTNPNVEVTAEEAEAMSNRMRKVVKADRALFDKAQ 471


>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
 gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
          Length = 785

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/346 (31%), Positives = 179/346 (51%), Gaps = 10/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-----SDRDNAIVNIL 239
           FSAT+S  +  LA       V+V +   N Q    + R   + +      DR+  + +++
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFV--NNNQQVAFNLRQEFIRIREDKEGDREPILASLI 398

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V I
Sbjct: 399 CRTFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLI 458

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           ATDVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV
Sbjct: 459 ATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISV 504


>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
 gi|160380650|sp|A7F4L5|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
 gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 801

 Score =  159 bits (403), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 173/340 (50%), Gaps = 13/340 (3%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL     + P   
Sbjct: 283 LATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLL-----YRPKKV 337

Query: 75  PLALA--IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P +    + PTRELA+Q       L + T +   + +GG+S+  +  +L+    +++ TP
Sbjct: 338 PTSRVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATP 397

Query: 133 GRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           GR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++FSAT+S 
Sbjct: 398 GRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQTMLFSATMSS 457

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK----NA 247
           ++  L +      VR+ + S+      +    + +    R+   +  L Y  A       
Sbjct: 458 SVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRL-RPGREGKRMGYLLYLCANVYTDRV 516

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   +    R   +      +   L G +SQ++R  +++  RDG+A   +ATD+A+RG
Sbjct: 517 IVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKASFLLATDLASRG 576

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +D+  ++ VI+ E   + +  LHR GRT RAGR G +  +
Sbjct: 577 LDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTI 616


Searching..................................................done


Results from round 2




>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040278|gb|ACT57074.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 573/573 (100%), Positives = 573/573 (100%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS
Sbjct: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD
Sbjct: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR
Sbjct: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR
Sbjct: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
Sbjct: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF
Sbjct: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF
Sbjct: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE
Sbjct: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK
Sbjct: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN
Sbjct: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573


>gi|315121801|ref|YP_004062290.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495203|gb|ADR51802.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 571

 Score =  436 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 472/571 (82%), Positives = 526/571 (92%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M IFE+IPQVIG+ALSERGYVNLT+VQ+A+L+P+LR+KD+LVSAQTGSGKTVAFGLALAS
Sbjct: 1   MNIFEDIPQVIGDALSERGYVNLTAVQKAVLDPNLRDKDILVSAQTGSGKTVAFGLALAS 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL   DRF PA+APLALAIAPTRELA+QVGRELEWLYAKTGVVV+VCIGGVS+HRERRD
Sbjct: 61  NLLEGKDRFGPAAAPLALAIAPTRELAMQVGRELEWLYAKTGVVVSVCIGGVSLHRERRD 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQNG+HIVVGTPGRLCDHIRGKGLN+SHLKAV+LDEADEMLDLGFRDDIEFILDSSP+KR
Sbjct: 121 LQNGSHIVVGTPGRLCDHIRGKGLNMSHLKAVILDEADEMLDLGFRDDIEFILDSSPEKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           RMLMFSATIS AITTLAKNYQKDAVR+NIASENRQHSDIDYRA+LV+LSDRDNAIVN+LR
Sbjct: 181 RMLMFSATISSAITTLAKNYQKDAVRINIASENRQHSDIDYRAILVSLSDRDNAIVNLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ AKNAIVFCSTRASVSRFT+VL EHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
Sbjct: 241 YYEAKNAIVFCSTRASVSRFTRVLGEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLPDLE+VIHAELSSNPENLLHRSGRTGRAGRKG+SVFV+PQNMQRRAERLF
Sbjct: 301 TDVAARGIDLPDLEIVIHAELSSNPENLLHRSGRTGRAGRKGVSVFVVPQNMQRRAERLF 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +EANVS  WE APSVEAI ERD+QR+L +PL +D IQGDEKK +  LLAKHDPEKIAA F
Sbjct: 361 KEANVSATWESAPSVEAIMERDSQRMLHNPLLIDPIQGDEKKSIGDLLAKHDPEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR++RAG+C PE+I  VSL +GRDRFRDDSR  + GG SRDNF+ SSWFSLS+GS+QKAE
Sbjct: 421 LRLNRAGMCPPEKIKAVSLSTGRDRFRDDSRDSRFGGASRDNFRNSSWFSLSIGSEQKAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           ARWL+PMLCR SGI+R SIGAIRV PD TF+E++  GV+ LRR VKLDKGI +KYL GEK
Sbjct: 481 ARWLIPMLCRKSGIDRHSIGAIRVLPDQTFIEIAESGVEFLRRPVKLDKGITIKYLNGEK 540

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           PDFRG +SS F+S+++ D   KRFK+FKGAS
Sbjct: 541 PDFRGGRSSSFRSRSNYDNTNKRFKKFKGAS 571


>gi|209549420|ref|YP_002281337.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535176|gb|ACI55111.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 659

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 322/579 (55%), Positives = 412/579 (71%), Gaps = 9/579 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGGERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ++AVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRNAVRISTAAEAKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLLEVTVQDGGSRKRRDNAEPFEPAQRGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQD---GATKRFKRFKGA 570
            L G     R      +  K S+D   G T R +R    
Sbjct: 541 KLSGTPDFSRAPSPKPYAGKPSRDERPGDTFREERRNNK 579


>gi|116252251|ref|YP_768089.1| cold-shock DEAD-box protein A (ATP-dependent RNA helicase DEAD)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256899|emb|CAK07993.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [Rhizobium leguminosarum bv. viciae 3841]
          Length = 651

 Score =  387 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 318/577 (55%), Positives = 410/577 (71%), Gaps = 8/577 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLAL IAPTRELA+QV RELEWL+  TG V+  C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  +++   R R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEITVQDDRSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            L G     R      +  K S+D   +    F+G  
Sbjct: 541 RLSGTPDFSRAPAPKPYAGKPSRD--ERPDDSFRGER 575


>gi|241204745|ref|YP_002975841.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858635|gb|ACS56302.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 651

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 319/577 (55%), Positives = 412/577 (71%), Gaps = 8/577 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A+APLAL IAPTRELA+QV RELEWL+  TG V+  C+GG+ +  ERR 
Sbjct: 61  TLLEGRERFGNAAAPLALVIAPTRELALQVKRELEWLFEMTGAVIVSCVGGMDIRSERRS 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSELKAAVLDEADEMLDLGFREDLEFILDAAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NP+ LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPDTLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVSERDDERLLADPIFNETPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++   R+R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDDRNRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            L G     R      +  K S+D   +    F+G  
Sbjct: 541 RLSGTPDFSRAPAPKPYAGKPSRD--ERPDDTFRGER 575


>gi|86357796|ref|YP_469688.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281898|gb|ABC90961.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 651

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 324/575 (56%), Positives = 413/575 (71%), Gaps = 9/575 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPALAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLDGHERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F D+ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA--FKVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAESYEPAQKGPREDFGPSVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ T+VE++    D  +  +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQD---GATKRFKR 566
            L G     R      +  K+S+D   G   R +R
Sbjct: 541 RLSGTPDFSRAAAPKPYAGKSSRDERPGEAFRDER 575


>gi|190891857|ref|YP_001978399.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697136|gb|ACE91221.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 651

 Score =  385 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 330/576 (57%), Positives = 419/576 (72%), Gaps = 11/576 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  WE  PS E + ERD +R+L DP+F D+ Q +E+ +V  LLA H  EK+AA F
Sbjct: 361 ENAGISAAWERPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLASHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYAPAQKGPREDFGPSVWFSVSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+ G+ ++ IGAI++QP+ T+VE++    D  +  +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGGVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDF-RGYKSSGFKSKNSQD---GATKRFKR 566
            L G  PDF R      +  K+S+D   G   R +R
Sbjct: 541 RLSG-MPDFSRAAAPKPYAGKSSRDERPGEAFRDER 575


>gi|222084927|ref|YP_002543456.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722375|gb|ACM25531.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 636

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 318/582 (54%), Positives = 406/582 (69%), Gaps = 9/582 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE I   I +AL++RGY  LT VQ+++L+PDL  KD LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFEGIVPAIAQALAKRGYETLTPVQKSMLDPDLAGKDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A  PLALAIAPTRELA+QV RELEWLY  TG  +  C+GG+ +  E+R 
Sbjct: 61  TLLDGAERFGRAGTPLALAIAPTRELALQVQRELEWLYELTGATIVSCVGGMDMRTEKRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRNSLDISKLKAVVLDEADEMLDLGFREDLEFILETSPTER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA+NYQ+DAVR+  A+E +QH DIDYRA+ V  SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIAKLAENYQRDAVRIASATEAKQHVDIDYRALTVVPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 YYEAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQSERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA++ +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADIPTNPETLLHRSGRTGRAGRKGVSALIVPLSGRRRTERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +   W   PS + + +RD +R+L DP+F   +  DE+ +V  LL  H  E++AA F
Sbjct: 361 EAARIRATWAKPPSADEVSQRDDERLLADPIFSAPLGEDEQSLVQQLLRTHGAEQVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD-----SRAFKVGGGSRDNFKGSSWFSLSVGS 475
           LR +RAG  APE++  V     R + R D            G  R++F    W SLSVG 
Sbjct: 421 LRQYRAGHSAPEDLQDVPAEGERKKPRRDDFPVTRYDEAPAGAGRNDFTDGVWVSLSVGR 480

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGI 531
           KQ AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE SA+G +     +     L++GI
Sbjct: 481 KQNAEPRWLIPMLCRNGNLTKRDIGAIKMQPEETFVEFSAEGAERFLTAIGPDKTLERGI 540

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           ++K L G     +  +  G+  K   + + + +   K   K+
Sbjct: 541 RVKPLDGIPDFSQAKREGGYGKKPFAEKSARPYDDSKPKWKS 582


>gi|327190854|gb|EGE57918.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 651

 Score =  382 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 324/579 (55%), Positives = 415/579 (71%), Gaps = 9/579 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F D+ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 361 ENAGISAAWARPPSAEEVNERDDERLLADPIFHDAPQEEEQGLVQQLLSSHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS--RAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R++R    APE++  V++  G  R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 421 VRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAVSYEPAQKGPREDFGPSVWFSISVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ T+VE++    D  +  +     L++GI++ 
Sbjct: 481 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADSFQEALGPNKTLERGIRVT 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQD---GATKRFKRFKGA 570
            L G     R      +  K+S+D   G   R +R K  
Sbjct: 541 RLSGTPDFSRAAAPKPYAGKSSRDERPGDAFRDERPKKK 579


>gi|332716889|ref|YP_004444355.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
 gi|325063574|gb|ADY67264.1| cold-shock DEAD box protein [Agrobacterium sp. H13-3]
          Length = 615

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 333/576 (57%), Positives = 413/576 (71%), Gaps = 7/576 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   I +AL +RGY +LT VQ+A+L+P+L +KD LVSAQTGSGKTVAFG+ALA+
Sbjct: 1   MTDTQGIAPAIAQALEKRGYKDLTPVQKAMLSPELADKDALVSAQTGSGKTVAFGIALAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL+EN RF  ASAPLALAIAPTRELA+QV RELEWLY   GV +A C+GG+ +  ERR 
Sbjct: 61  TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHI+VGTPGRLCDHI+   L++S L+AVVLDEADEMLDLGFR+D+EFIL+ SP  R
Sbjct: 121 LERGAHIIVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDNR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQK+AVR+  ASE +QH DI+YRA+LV  SDR+NAI+N LR
Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVTGSDRENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGEL+Q ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S  V+P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVNQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A VS  W   PSVE I ERD  R+L DP   +++  DE   V  LL +H  EK+AA F
Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPALTEAVADDEHDFVKQLLEQHGAEKVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R++ AG  APE+IT V+L + R   RD  ++         R +F  S+WFSLSVG KQ 
Sbjct: 421 VRLYHAGRSAPEDITEVALDNTRKPRRDSFETPENDAPRRERSDFSDSAWFSLSVGRKQS 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDKGIQLK 534
           AE RWL+PMLCR   I RQ IGAIR+Q   TFVE++AD VD       + + L+KGI+LK
Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
            L G KP+  G      +   +Q    K       A
Sbjct: 541 ALEG-KPEMTGSVREDTRPATAQRKFNKPNNAGGAA 575


>gi|15890807|ref|NP_356479.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
 gi|15159093|gb|AAK89264.1| cold-shock dead-box protein A [Agrobacterium tumefaciens str. C58]
          Length = 615

 Score =  377 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 331/579 (57%), Positives = 417/579 (72%), Gaps = 9/579 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   I +AL +RGY +LT VQ+A+L P+L  KD LVSAQTGSGKTVAFG+ALA+
Sbjct: 1   MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELANKDALVSAQTGSGKTVAFGIALAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL+EN RF  ASAPLALAIAPTRELA+QV RELEWLY   GV +A C+GG+ +  ERR 
Sbjct: 61  TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHI+   L++S ++AVVLDEADEMLDLGFR+D+EFIL+ SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPDDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQK+AVR+  ASE +QH DI+YRA+LV+ SDR+NAI+N LR
Sbjct: 181 RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGEL+Q ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG+KG+S  V+P + +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A VS  W   PSVE I ERD  R+L DP   +++  DE+  V+ LL +H  EK+AA F
Sbjct: 361 EGAKVSAAWVRPPSVEEIVERDGARLLADPTLSEAVTDDERDFVNKLLEQHGAEKVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD--DSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R++ +G  APE+I  V+L + R   RD  ++         R +F  S+WFSLSVG KQ 
Sbjct: 421 VRLYHSGRSAPEDIFEVALDNTRKPRRDSFETTENNAPRRDRSDFSDSAWFSLSVGRKQS 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDKGIQLK 534
           AE RWL+PMLCR   I RQ IGAIR+Q   TFVE++AD VD       + + L+KGI+LK
Sbjct: 481 AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK 540

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            + G KP+  G      +   +Q   TK      GA ++
Sbjct: 541 QMEG-KPEMTGNAREDTRPATAQRKFTKSDN--AGAPRD 576


>gi|227820653|ref|YP_002824623.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
 gi|227339652|gb|ACP23870.1| DEAD/DEAH box protein, ATP-dependent RNA helicase [Sinorhizobium
           fredii NGR234]
          Length = 633

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 321/582 (55%), Positives = 407/582 (69%), Gaps = 10/582 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLAL  
Sbjct: 1   MTEFEGIAPAIAEALAKRGYNTLTPVQQAMLDPALEGADALVSAQTGSGKTVAFGLALGP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL    +F    APLAL IAPTRELA+QV RELEWLY  TG  +A C+GG+ +  ERR 
Sbjct: 61  TLLGPARQFDSPGAPLALVIAPTRELALQVKRELEWLYEITGATIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS L+A+VLDEADEMLDLGFR+D+EFIL++SP +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRDSLDISALRAIVLDEADEMLDLGFREDLEFILEASPTER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ +ASE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVASEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 YYDARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERNHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +NP+ LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIVPVNQRRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS E +  RD +R++ D  F + ++ DE+ +V  L+ +H  EK+AA F
Sbjct: 361 DGARITATWAKPPSAEDVTGRDDERLIADAAFDEPLRDDEQTIVQALIDRHGAEKLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE++ V L   R + R D+ AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSSRSAPEELSDVPLFDDRKKARRDAPAFTGDSAAAPRADFTDGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG +           L+KGI++K
Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVELTADGAERFLTAIGPNRTLEKGIRVK 540

Query: 535 YLGGEKPDFRGYKSSG-FKSKNSQDGATKRFKR---FKGASK 572
            L G     R       F  K  +    +  +    F+   K
Sbjct: 541 TLPGAPDGSRPRDDKPEFAKKRPRPAEAQPERGQKDFQPKRK 582


>gi|222149119|ref|YP_002550076.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
 gi|221736104|gb|ACM37067.1| cold-shock dead-box protein A [Agrobacterium vitis S4]
          Length = 673

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 302/578 (52%), Positives = 398/578 (68%), Gaps = 7/578 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  ++ I   I EAL +RGY  LT VQ+A+++ DL  +D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTDYDGIVPAIAEALRKRGYATLTPVQQAMIDTDLEGRDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A  PLAL IAPTRELA+QV RELEWLY  TG + A C+GG+ +  ERR 
Sbjct: 61  TLLGSENRFGRAVKPLALCIAPTRELALQVQRELEWLYENTGAIFATCVGGMDIRNERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHI+VGTPGRL DHI  + L++S L+AVV+DEADEMLDLGFR+D+EFIL  SP +R
Sbjct: 121 LERGAHIIVGTPGRLRDHITRRALDLSGLRAVVMDEADEMLDLGFREDLEFILKESPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I  LA++YQ+DA R+   SE +QH DI+YRA+L   +D++NAI+N LR
Sbjct: 181 RTLMFSATVPRSIADLARSYQRDAKRIETVSEQKQHIDIEYRAMLTVPADKENAIINALR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T  L    F VVALSGELSQ ER++ALQ MRDGRARVC+A
Sbjct: 241 FYEARNAIVFCSTRANVNHLTARLHNRGFSVVALSGELSQSERTHALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N E LLHRSGRTGRAG KG+S  ++P + +R+AER+ 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGNKGVSALIVPMSQRRKAERIL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             ANV   W   PS + +  RD +R+L DP+F ++I  +E   +  LL  H  +KI A +
Sbjct: 361 GGANVQAAWVKPPSADEVIARDDERLLADPVFSEAISEEEAATIARLLEAHGADKITAAY 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR +R+   APE++  V + + R R  +D+         R  F  S WFSLSVG +Q AE
Sbjct: 421 LRAYRSTRSAPEDLMEVKIQAERPRRENDTYEPNTPSRPRSEFGPSVWFSLSVGRRQSAE 480

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
            RWL+PMLCR+  I +  IGAI++QP+ TFVE++   ++     +     L++GI +K L
Sbjct: 481 PRWLIPMLCRNGNITKNEIGAIKMQPEETFVEIAQANLEQFLTALGPNKTLERGIIVKQL 540

Query: 537 GGEKPDF--RGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            G  PDF     + +    ++  D A ++ +  +G  K
Sbjct: 541 PG-MPDFNAPPKERAARPPRDDSDFAERKPRAAQGDKK 577


>gi|307317997|ref|ZP_07597434.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306896399|gb|EFN27148.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 630

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 320/580 (55%), Positives = 407/580 (70%), Gaps = 8/580 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+ A APLAL IAPTRELA+QV REL+WLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS + +  RD +RI  DP   ++ + DE+ +V+ L++++  EKIAA F
Sbjct: 361 ENARITAAWAKPPSADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R D  AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L         L+KGI++K
Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540

Query: 535 YLGGEKPDFRGYKSSGF--KSKNSQDGATKRFKRFKGASK 572
            L G     R  +      K +     A +  K FK   K
Sbjct: 541 TLPGAPDSSRPRQDKPDFEKKRPPATAAEREHKDFKPKRK 580


>gi|15964184|ref|NP_384537.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307301327|ref|ZP_07581089.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|15073360|emb|CAC41868.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306903783|gb|EFN34370.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 630

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 317/580 (54%), Positives = 406/580 (70%), Gaps = 8/580 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFAGIAPAIAEALAKRGYETLTPVQQAMLDPSLGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+ A APLAL IAPTRELA+QV REL+WLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARKFAQAGAPLALVIAPTRELALQVMRELDWLYEMAGATIASCVGGMDMRSERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL++SP  R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRGSLDISGLKAVVLDEADEMLDLGFREDLEFILEASPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAK+YQ+DAVR+ + SE +QH DI+YR++LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKSYQRDAVRIGVTSEQKQHGDIEYRSLLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   P  + +  RD +RI  DP   ++ + DE+ +V+ L++++  EKIAA F
Sbjct: 361 ENARITAAWAKPPLADEVARRDDERIAADPALAEAPREDEQAIVETLISRYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R D  AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELVDVAVYDDRRKPRRDGPAFTGDSEPAPRADFADGQWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L         L+KGI++K
Sbjct: 481 AEPRWLIPMLCRYGKLSKRDIGAIRMQPEETYVEMTADGAERLLAAIGPNRMLEKGIRVK 540

Query: 535 YLGGEKPDFRGYKSSGF--KSKNSQDGATKRFKRFKGASK 572
            L G     R  +      K +     A +  K F+   K
Sbjct: 541 TLPGAPDSSRPRQDKPDFEKKRPPATAAEREHKDFEPKRK 580


>gi|150395295|ref|YP_001325762.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150026810|gb|ABR58927.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 626

 Score =  365 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 319/580 (55%), Positives = 404/580 (69%), Gaps = 9/580 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     I   I EAL++RGY  LT VQ+A+L+P L   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTELAGIAPAIAEALAKRGYETLTPVQQAMLDPALGTADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +F+   APLAL IAPTRELA+QV RELEWLY   G  +A C+GG+ +  ERR 
Sbjct: 61  TLIGSARQFAQPGAPLALVIAPTRELALQVKRELEWLYEIAGATIASCVGGMDMRSERRM 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRLCDHIR   L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P  R
Sbjct: 121 LDRGAHIVVGTPGRLCDHIRRGSLDISELKAVVLDEADEMLDLGFREDLEFILEAAPADR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLAKNYQ+DAVR+ + SE +QH DI+YRA+LVA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAKNYQRDAVRIGVTSEQKQHGDIEYRALLVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+NAIVFCSTRA+V+  T       F VVALSGELSQ ER++ALQ MRDGRARVCIA
Sbjct: 241 FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG+KG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDTLLHRSGRTGRAGQKGVSALIVPVNARRKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A ++  W   PS + +  RD +RI  DP   +  + DE+ +V+ L+  +  EKIAA F
Sbjct: 361 ENARITAAWAKPPSADEVALRDDERIAADPALAEPPREDEQAIVETLIGLYGAEKIAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           +R  R+   APEE+  V++   R + R +S AF        R +F    WFSLSVG KQ 
Sbjct: 421 VRQFRSNRSAPEELAEVAVYDDRKKARRESPAFSGDSDPAPRADFADGRWFSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLK 534
           AE RWL+PMLCR   ++++ IGAIR+QP+ T+VE++ADG + L         L++GI++K
Sbjct: 481 AEPRWLIPMLCRHGKLSKRDIGAIRMQPEETYVEMTADGAERLLTAIGPDRMLERGIRVK 540

Query: 535 YLGGEKPDFRGYK--SSGFKSKNSQDGATKRFKRFKGASK 572
            L G  PD    +     F+ K     + +  K FK   K
Sbjct: 541 ALPGA-PDVSRSRQDRPDFEKKRPAPASEREQKDFKPKRK 579


>gi|13473704|ref|NP_105272.1| DEAD-box protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
 gi|14024455|dbj|BAB51058.1| DEAD-BOX protein, ATP-independent RNA helicase [Mesorhizobium loti
           MAFF303099]
          Length = 620

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 319/586 (54%), Positives = 411/586 (70%), Gaps = 18/586 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I   + +AL +RGY  LT VQ+A+L   L   D LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MSNFVGIVPALAQALEKRGYSELTPVQKAVLE--LGSADALVSAQTGSGKTVAFGLAMAP 58

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 59  TLLDGAERFGAAMAPLALAVAPTRELALQVTRELEWLYEPTGATVASCVGGMDMRTERRA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALNVAQADRENAIINVLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A +   W   PS + +  RD +RIL DP F + ++ DE+  +D LLAKH  E++AA F
Sbjct: 359 QNAGLKATWASPPSADDVIRRDDERILADPAFDEPVKDDERAFIDALLAKHGAEQVAAAF 418

Query: 421 LRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  V+     R+R   +  A +    S RD+F  S WFSLSVG +Q 
Sbjct: 419 VRQCRASRSAPEDLIDVAPFTPSRERPAGEKFAQRDEAPSRRDDFGASVWFSLSVGRRQN 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ TFV+++AD  D     +  D+ +Q    +K
Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLAAIGPDRKLQGNILVK 538

Query: 535 YLGGEKPD--FRGYKSSGFKSKNSQDGAT-------KRFKRFKGAS 571
            L G  PD    GY++     K  +  A        ++F++   AS
Sbjct: 539 RLDG-TPDLSRAGYQAPSPDKKPHRGKAPFDPNAPKRKFEKRTPAS 583


>gi|162146723|ref|YP_001601182.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785298|emb|CAP54844.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  356 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 269/580 (46%), Positives = 362/580 (62%), Gaps = 11/580 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      I  AL  RGY   T VQ+A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPAIRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R L+ 
Sbjct: 63  GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH     L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLA+ YQ+DA+R++  S  RQH+DI YRAV+    +   A+VNILR+  
Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V      L E  F  VALSGEL Q ER+ A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++   LLHRSGRTGRAGRKG+   ++P +M+RRAERL   A
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   P+ EAIR +DA+R+L DP+  +     ++ +V  L      E++AA  L++
Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422

Query: 424 HRAGLCAPEEITPVSLVSGR-DRFRDDSRAFKVGGGSRDNFKG--SSWFSLSVGSKQKAE 480
           +RA L  PE+I P+ + + R  R  D +R  + G       +G   +WFS+SVG + KA+
Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
            +WL+P++CR  G+ +  IGAIR+  D T  E++ +  +     V      +++    + 
Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAERFTACVAATDSDEVRISAAKA 542

Query: 541 P--------DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           P          RGY       K       +  +   GA++
Sbjct: 543 PAGGPRGVSGERGYAPRKPAGKAGYPHGPRAGRAPAGATR 582


>gi|209543288|ref|YP_002275517.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530965|gb|ACI50902.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 596

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 268/580 (46%), Positives = 362/580 (62%), Gaps = 11/580 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL  RGY   T VQ+A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPALRRALDARGYEEPTPVQKAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R L+ 
Sbjct: 63  GGAERFGPAGAPLAVIIAPTRELAMQVQRELSWLYAPAGARIVSCIGGMDARREARALEI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH     L +S L+ VVLDEADEMLDLGFRD+++ +LD+ P  RR L
Sbjct: 123 GAHIVVGTPGRLCDHQSRGRLVLSELRVVVLDEADEMLDLGFRDELQQLLDAMPDTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLA+ YQ+DA+R++  S  RQH+DI YRAV+    +   A+VNILR+  
Sbjct: 183 LFSATIAKDIATLARRYQRDALRIDTLSGARQHADITYRAVMADPREIIPAVVNILRFTD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V      L E  F  VALSGEL Q ER+ A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCATRELVRHMQGALLERGFSSVALSGELGQSERTRAIESLRTGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++   LLHRSGRTGRAGRKG+   ++P +M+RRAERL   A
Sbjct: 303 AARGIDIPALSLVVHASLPTDSATLLHRSGRTGRAGRKGVCALIVPVSMRRRAERLLTMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   P+ EAIR +DA+R+L DP+  +     ++ +V  L      E++AA  L++
Sbjct: 363 KVSAEWTAVPTAEAIRAQDAERLLTDPILTEGAAPGDEDLVARLAENRSAEQLAAALLQM 422

Query: 424 HRAGLCAPEEITPVSLVSGR-DRFRDDSRAFKVGGGSRDNFKG--SSWFSLSVGSKQKAE 480
           +RA L  PE+I P+ + + R  R  D +R  + G       +G   +WFS+SVG + KA+
Sbjct: 423 YRARLPDPEDIRPLRVEAPRAPREGDYARRKEQGPREDHAPRGGPGAWFSMSVGRQDKAD 482

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
            +WL+P++CR  G+ +  IGAIR+  D T  E++ +  +     V      +++    + 
Sbjct: 483 PKWLVPLICRLGGVRKNDIGAIRIADDHTLFEIATESAERFTACVAATDSDEVRISAAKA 542

Query: 541 P--------DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           P          RGY       K       +  +   GA++
Sbjct: 543 PAGGPRGVSGERGYAPRKPAGKAGYPHGPRAGRAPAGATR 582


>gi|304392954|ref|ZP_07374885.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
 gi|303294952|gb|EFL89321.1| ATP-dependent RNA helicase protein [Ahrensia sp. R2A130]
          Length = 634

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 301/586 (51%), Positives = 392/586 (66%), Gaps = 14/586 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  I + +  AL+ RGY  LT VQ+++ N +L   D+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MTEFTGIARPLARALAARGYETLTPVQQSVSNTELDGADLLVSAQTGSGKTVAFGIAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF PA  PLAL IAPTRELA+QV RELEWLYA  G V+  C+GG+ +  ERR 
Sbjct: 61  TLLDGEERFGPADKPLALVIAPTRELALQVCRELEWLYADAGAVITSCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIVVGTPGRL DHI  + ++   L+AVVLDEADEMLDLGF++D+EFIL+++P++R
Sbjct: 121 LERGVHIVVGTPGRLRDHISRRAMDCRQLQAVVLDEADEMLDLGFKEDLEFILEAAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR+   +E  QH+DI+YRA++VA  +R+NAIVN+LR
Sbjct: 181 RTLMFSATVPNAIAGLAKSYQRDAVRITTEAERDQHADIEYRALVVAPRERENAIVNVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+  +NA+VFC+TRASV+          F VVALSGELSQ ERS+ALQ +RDGRA+VCIA
Sbjct: 241 YYDPENALVFCNTRASVNHMVARFTNRGFSVVALSGELSQNERSHALQALRDGRAKVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L SNPE LLHRSGRTGRAGRKG+S  ++    + RAERL 
Sbjct: 301 TDVAARGIDLPKLELVIHADLPSNPETLLHRSGRTGRAGRKGISALMVDVKGRNRAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R A +   W   PS + +  RD +R+L  P   +  + DE+  +  LL +  PE+IAA +
Sbjct: 361 RFAKLDATWANPPSADDVYGRDEERMLASPALSEPPKADEQATIAKLLEQFSPEQIAAAY 420

Query: 421 LRIHRAGLCAPEEITPVSL--VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR  RA   APE+I  VS+   +     R + +        R +F+ S W SLSVG KQ 
Sbjct: 421 LRQVRADHSAPEDIEIVSVHQPNKPKYERSEGKQKTFEKKPRRDFENSVWVSLSVGRKQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+P++C + G+ +  IG+IR+QP  TFVE+ AD  D     +     L+K I++ 
Sbjct: 481 AEPRWLIPLICNAGGLTKSDIGSIRMQPAETFVELDADRADDFMNALGANATLEKNIRVT 540

Query: 535 YLGG------EKP-DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            + G      +KP   + Y+   FK   S DG    FK+     K 
Sbjct: 541 PVDGVPDIAPQKPFAKKPYEKKPFKKGRSADGDA-PFKKQGDFKKR 585


>gi|254460192|ref|ZP_05073608.1| ATP-dependent RNA helicase [Rhodobacterales bacterium HTCC2083]
 gi|206676781|gb|EDZ41268.1| ATP-dependent RNA helicase [Rhodobacteraceae bacterium HTCC2083]
          Length = 721

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 302/579 (52%), Positives = 393/579 (67%), Gaps = 18/579 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FEN+   + EAL  +GY  LT VQ  +  P+  ++D+LVSAQTGSGKTVAFGLA+A 
Sbjct: 12  MTDFENVIPTLNEALKAKGYETLTPVQVEVSQPEFLDQDLLVSAQTGSGKTVAFGLAIAP 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L EN RF  A+ PLAL IAPTRELA+QV RE +WL+A TGVVVA  +GG+    ERR 
Sbjct: 72  TILEENGRFERAATPLALVIAPTRELALQVKREFDWLFAPTGVVVASTVGGMDSRTERRA 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVV TPGRL DHI    +++S L+AVVLDEADEMLD+GF +D+E+ILD++P +R
Sbjct: 132 LERGAHIVVATPGRLRDHIMRGAIDLSALRAVVLDEADEMLDMGFSEDLEYILDATPSER 191

Query: 181 RMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R LMFSAT+   I     K  +KD  RV    E  QH+DI YRA+ VA SD +NAI+N L
Sbjct: 192 RTLMFSATVPRGIAKLAQKYQRKDTKRVETIGEGPQHADITYRAMTVAPSDTENAIINTL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           RY+ A+NAIVF +TRA V+R T   +   F VV+LSGELSQ ER++ALQ MRDGRARVC+
Sbjct: 252 RYYEAQNAIVFANTRAMVARLTARFSNRGFSVVSLSGELSQNERTHALQAMRDGRARVCV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGIDLP+LELVIHA+L SN E LLHRSGRTGRAGRKG+S  ++P   + +AERL
Sbjct: 312 ATDVAARGIDLPNLELVIHADLPSNGETLLHRSGRTGRAGRKGISALIVPGRQKSKAERL 371

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R A ++  W  APS + +  RD +R+L DP + +++  DE+     LL+++ PE+IAA 
Sbjct: 372 LRFAKLTAEWSNAPSADDVNARDEERMLNDPSWSEALSEDEQSFAGKLLSQYKPEQIAAA 431

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FLR+HR+   APE++  V+   G+ R   + RA +       +F  SSWFSLS+G K KA
Sbjct: 432 FLRLHRSKHSAPEQLGEVTDTRGK-REPREPRAPR-------DFGPSSWFSLSLGRKHKA 483

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKY 535
           E RWL+PMLCR+  I++  IGAIRVQ   TFVEV    V+ +++     + L++G +L  
Sbjct: 484 EPRWLLPMLCRNGNISKDDIGAIRVQYQETFVEVQTSAVERMKKELGEGLDLEQGAKLTE 543

Query: 536 LGGEKPDFR----GYKSSGFKSKNSQDGATKRFKRFKGA 570
           L G KPDF     G  + G    + +     R +  K  
Sbjct: 544 LPG-KPDFDASPNGPPADGPARPHRKGLREDRPRGDKPR 581


>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
 gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 632

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 174/608 (28%), Positives = 271/608 (44%), Gaps = 46/608 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV             V  V   GG     + 
Sbjct: 66  NNLKPE------LKAPQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V  
Sbjct: 180 THQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHD 412
           + R   +++     P+ E + +R   +          ++  +  M   LL       + D
Sbjct: 360 VERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLTKLQPQEELD 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--------------------- 451
            E +AA  L++ +     P  + P      R  FRD                        
Sbjct: 418 IETLAAALLKMAQG--ERPLILPPDPAFRPRREFRDRDESRSDSRGDRRRDPRDSRESRD 475

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +     R        + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 476 GDRPQRRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTI 535

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGG--EKPDFRGYKSSGFKSKNSQDGATKRFK 565
           E+      D +    RT  L+K + ++ LG    +P+ RG           +DGA  R  
Sbjct: 536 ELPKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGNRPAGAGGERRDGAAPRRS 595

Query: 566 RFKGASKN 573
              G  + 
Sbjct: 596 FGGGERRE 603


>gi|319780673|ref|YP_004140149.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166561|gb|ADV10099.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 624

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 316/588 (53%), Positives = 415/588 (70%), Gaps = 16/588 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE +   +  AL +RGY  LT VQ+A++ P+L E D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MSNFEALVPALARALEKRGYSELTPVQKAVVAPELGEADALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   +RF  A+APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 61  TLLEGAERFGYAAAPLALAVAPTRELALQVTRELEWLYELTGATVASCVGGMDMRSERRV 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI  + L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRRSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA  DR+NAI+N+LR
Sbjct: 181 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAQPDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 241 YYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + ++R ERL 
Sbjct: 301 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNSARKRTERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A +   W   PS + +  RD +RIL DP F + ++ DE+  +D LLA+H  E++AA F
Sbjct: 361 QNAGLKATWASPPSADDVMRRDDERILADPAFDEPVKEDERSFIDALLARHGAEQVAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  ++     R+R   +  A +    S RD+F  S WFSLS+G +Q 
Sbjct: 421 VRQCRASRSAPEDLMEIAPFTPSRERPAGEGFARRDEAPSRRDDFGDSVWFSLSIGRRQN 480

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ----LK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ T+V+++AD  D     +  D+ +Q    +K
Sbjct: 481 AEPRWLIPMLCRTGSISKREIGAIKMQPEETYVQIAADWADRFLAAIGPDRKLQGNILVK 540

Query: 535 YLGGEKPD--FRGYKSSGFKSKNSQDGAT-------KRFKRFKGASKN 573
            L G  PD    GY+      K  +  A        ++F++   A+ +
Sbjct: 541 RLDG-TPDLSRAGYQPPSPDKKPHRGKAPFDPNAPKRKFEKRAPAAAD 587


>gi|114763012|ref|ZP_01442442.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Pelagibaca bermudensis HTCC2601]
 gi|114544336|gb|EAU47344.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. HTCC2601]
          Length = 727

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 304/577 (52%), Positives = 389/577 (67%), Gaps = 23/577 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL+ERGY  LT VQEA+ NPDL+  D+LVSAQTGSGKTV FGLA+A TLL E   
Sbjct: 3   QTLSDALAERGYDTLTPVQEAVTNPDLQTSDLLVSAQTGSGKTVGFGLAIAPTLLDEAGM 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              AS PLAL +APTRELA QV RELEWLYAK G  V  C+GG+ +  ERR L+ GAHIV
Sbjct: 63  LGEASLPLALIVAPTRELAFQVKRELEWLYAKAGARVVSCVGGMDMRDERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DHI+    ++S L+A+VLDEADEMLDLGFR+D+EF+L  +P++RR L+FSAT
Sbjct: 123 VGTPGRLVDHIQRGSFDMSALRAIVLDEADEMLDLGFREDLEFMLGEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I TLA+ YQ+DAVRV   SE  QH+DI Y+A+ VA  D +NAI+N+LRYH A+NAI
Sbjct: 183 VPPMIATLAQLYQRDAVRVTTISERSQHADITYQALRVAQHDAENAIINMLRYHDAQNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA+V+R T   +   F VV LSGELSQ ERS+ALQ MRDGRA+VC+ATDVAARGI
Sbjct: 243 VFANTRATVNRLTARFSNRGFAVVCLSGELSQTERSHALQAMRDGRAKVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL SN E LLHRSGRTGRAGRKG+S  V+P  + ++AERL + A V+  
Sbjct: 303 DLPNLELVIHAELPSNTEGLLHRSGRTGRAGRKGISALVVPPKLTKKAERLLKWAKVTAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS E I  RD +R+L DP + + I  DE      LLA+  PE +AA +LR++R   
Sbjct: 363 WIEAPSAEEILRRDEERLLADPTWSEEITEDEAGFAARLLAEQSPETVAAAYLRLYRDRH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++             D+R  +     R  F  S W +LSVG   +AEARWL+P+L
Sbjct: 423 SAPEELSAP-----------DARPERPERKERAAFGPSRWVALSVGRDDRAEARWLLPLL 471

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGG------ 538
           CR+ G+++ +IGAIRVQ   TFVE+S   V+     +     L+ G+ ++ + G      
Sbjct: 472 CRAGGLDKDAIGAIRVQDSETFVELSEPVVEGFLGGLGDGSTLEDGVTVRAVEGTPEFAS 531

Query: 539 EKPDFRGYKSSGFKSKNSQDGATK--RFKRFKGASKN 573
             P   G +S G ++   +    +  R +    A K 
Sbjct: 532 RPPRRDGPRSDGPRNDRPRKDGPRKPRPEGDAPARKR 568


>gi|260469782|ref|ZP_05813939.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259028428|gb|EEW29747.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 620

 Score =  350 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 316/569 (55%), Positives = 408/569 (71%), Gaps = 11/569 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FE +   + +AL +RGY +LT VQ+A+L   L + D LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MSNFEALVPALAKALEKRGYSDLTPVQKAVLE--LGQADALVSAQTGSGKTVAFGLAMAP 58

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL   DRF+PA+APLALA+APTRELA+QV RELEWLY  TG  VA C+GG+ +  ERR 
Sbjct: 59  TLLDGADRFAPATAPLALAVAPTRELALQVTRELEWLYEMTGATVASCVGGMDMRTERRA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S LKAVVLDEADEMLDLGFR+D+EFILD++P +R
Sbjct: 119 LERGAHIVVGTPGRLRDHITRNSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  +I TLA+ YQ+DAVR++ A E +QH DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 179 RTLMFSATVPRSIATLAQGYQRDAVRISAAGEEKQHLDIEYRALSVAPADRENAIINVLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ AKNA+VFC+TRA+V+  T       F VVALSGELSQ ERS+ALQ MRDGRA+VCIA
Sbjct: 239 FYEAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P + +RR ERL 
Sbjct: 299 TDVAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPGSARRRTERLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + A ++  W   PS + +  RD +RIL DP F + ++ DE+  +D LL++H  E++AA F
Sbjct: 359 QSAKLTATWASPPSADDVMRRDDERILADPAFDEPVKDDERAFIDALLSQHGAEQVAAAF 418

Query: 421 LRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS-RDNFKGSSWFSLSVGSKQK 478
           +R  RA   APE++  V+     R+R   +  A +    S RD+F  S WFSLS+G +Q 
Sbjct: 419 VRQCRASRSAPEDLMDVAPFTPSRERPAGEGFARRDEAPSRRDDFGASVWFSLSIGRRQN 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLK 534
           AE RWL+PMLCR+  I+++ IGAI++QP+ TFV+++AD  D          KL   I +K
Sbjct: 479 AEPRWLIPMLCRTGSISKREIGAIKMQPEETFVQIAADWADRFLTAIGPDRKLQGNIVVK 538

Query: 535 YLGGEKPD--FRGYKSSGFKSKNSQDGAT 561
            L G  PD    GY+      K  +  A 
Sbjct: 539 RLDG-TPDLSRAGYQPPSPDKKPHRGKAP 566


>gi|293393148|ref|ZP_06637463.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
 gi|291424294|gb|EFE97508.1| ATP-dependent RNA helicase DeaD [Serratia odorifera DSM 4582]
          Length = 642

 Score =  350 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 170/599 (28%), Positives = 275/599 (45%), Gaps = 35/599 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 7   TSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L       +   AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 67  HNLD------ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  +  M   LLAK  PE+   
Sbjct: 361 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLAKLQPEEELD 418

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR------------DDSRAFKVGGGSR 460
              +AA  L++ +          PV     R  F                   +     R
Sbjct: 419 IETLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGGDRRRDSRDGGERPQRRER 478

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      +
Sbjct: 479 RDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGE 538

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF--KRFKGASKN 573
            ++   RT  L+K + ++ LG  +P  R  +  G  +   + G  + F  +R +GA + 
Sbjct: 539 ILNHFTRTRILNKPMNMQLLGDAQPHERRERREGGNAGGERRGNGRPFNGERREGAPRR 597


>gi|322831220|ref|YP_004211247.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321166421|gb|ADW72120.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 640

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 172/606 (28%), Positives = 279/606 (46%), Gaps = 41/606 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 7   TSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +       +   AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 67  HNID------ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL---AKHDPE 414
           + R   +++     P+ E + ER   +   +    L+S   D+ + +   L    + D E
Sbjct: 361 IERTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVE 420

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------------RDDSRAFKVG 456
            +AA  L++ +          PV       R                   R + R  + G
Sbjct: 421 TLAAALLKMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPVRSNDRPARDG 480

Query: 457 ---GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                 R +      + + VG     E R ++  +     I+ + IG I++    + +E+
Sbjct: 481 DSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL 540

Query: 514 SA----DGVDLLRRTVKLDKGIQLKYLGGEKP-DFRGYKSSGFKSKNSQDGATKRF--KR 566
                 + +    RT  L+K + ++ +G   P   R  + +G   +   +GA + F  +R
Sbjct: 541 PKGMPGEILSHFTRTRILNKPMNMQLIGDAVPQAPRRDRPAGAGGERRGNGAPRPFNGER 600

Query: 567 FKGASK 572
            +GA  
Sbjct: 601 REGARG 606


>gi|320540183|ref|ZP_08039838.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029849|gb|EFW11873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 623

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 176/590 (29%), Positives = 276/590 (46%), Gaps = 34/590 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   L A+ 
Sbjct: 14  LSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLQAD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   +         V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEAMTDFSKHMHSVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + + KD   V+I S      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEAIRRITRRFMKDPQEVHIQSSITTRPDISQSYWTVHGMRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419
           ++     P+ E + ER   +          ++  +  M   LLAK  PE+      +AA 
Sbjct: 368 TIPEVELPNAELLGERRLAKFAAK--VQQQLESRDLDMYRALLAKLQPEEELDMETLAAA 425

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGSRDNFKG 465
            L++ +          PV     R  F D              DSR        R +   
Sbjct: 426 LLKMAQGERPLILPPDPVFKPRQRREFNDRDDLGNDRCRNIRSDSRDGDRPRRERRDVGE 485

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLL 521
              + + VG     E R ++  +     I+ + IG I++    + +E+      + ++  
Sbjct: 486 MQLYRIEVGRDDGVEVRHIVGTIANEGDISSRYIGNIKLFASHSTIELPKGMPGEILNHF 545

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            RT  L+K + ++ LG  +P+ R   S  F  +  ++GA +R        
Sbjct: 546 TRTRILNKPMNMQLLGDAQPNERSGHSRPFNGE-RREGAPRRSAGGGDRR 594


>gi|284006674|emb|CBA71936.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase)
           [Arsenophonus nasoniae]
          Length = 615

 Score =  346 bits (887), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 171/589 (29%), Positives = 280/589 (47%), Gaps = 30/589 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   +    
Sbjct: 19  LSTPILSALNDLGYEKPSPIQQQCIPYLLDGCDVLGMAQTGSGKTAAFSLPLLHNIDIT- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   + E+      V V    GG     + R L+ G 
Sbjct: 78  -----LKAPQILVLAPTRELAVQVAEAMGEFSKHMRSVNVVALYGGQRYDSQLRALRQGP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   LN+SHL+ +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 133 QIVVGTPGRLLDHLKRGTLNLSHLRGLVLDEADEMLRMGFIEDVENIMSQIPSEHQTALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + + K    ++I S      DI      V    ++ A+V  L      
Sbjct: 193 SATMPEAIRRITRRFMKSPKEISIQSSVTTRPDITQSYWSVYGMRKNEALVRFLEAEDFD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 253 AAIIFVRTKNATLEVAEALERSGYNSSALNGDMNQALREQTLERLKDGRLDILIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R    
Sbjct: 313 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKQ 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHDPEKIAAG 419
            +     PS   + ER   +  ++      ++  + +    LL       + D E +A+ 
Sbjct: 373 PITEVELPSAAVLSERRQAKFAEN--IQKQLESGDLEKYRALLTKLVANDELDMETLASA 430

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-------SRDNFKGSSWFSLS 472
            L++ +          PV         RD+ R     G         R +      + + 
Sbjct: 431 LLKMAQGDRPLILPPDPVRRAKREFNSRDERRRNNSNGASERSPRRERRDVGDMELYRIE 490

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLD 528
           VG     E R ++  +   + I+ + IG I++    + +E+      + ++ L RT  L+
Sbjct: 491 VGRDDGVEVRHIVGAIANEADISSRYIGNIKLFASHSTIELPKGMPNELLNHLTRTRILN 550

Query: 529 KGIQLKYLGGEKPDFR---GYKSSG-FKSKNSQDGATKRFKRFKGASKN 573
           K +Q++ LG  +P  R   G ++ G  + +  + G  +R +R +   +N
Sbjct: 551 KPMQMQLLGEAQPFERRGNGQRNGGELRERGRRFGNERRSEREQFRGRN 599


>gi|254473911|ref|ZP_05087305.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
 gi|211957021|gb|EEA92227.1| dead-box ATP-dependent rna helicase 53 [Pseudovibrio sp. JE062]
          Length = 607

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 273/542 (50%), Positives = 363/542 (66%), Gaps = 17/542 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M I E +   +  AL +R Y +LT VQ A+L+ +L+ KD+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MTIPEGVSPALSTALEKREYTSLTPVQTAVLDEELKGKDLLVSAQTGSGKTVAFGIAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL + +R   A+ PLAL +APTRELA+QV +ELEWLY + G  +  C+GG+ + RERR+
Sbjct: 61  ELLGDEERMGRANEPLALCVAPTRELAIQVSKELEWLYGEAGARITTCVGGMDMRRERRN 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRL DHI     + S L+ VVLDEADEMLDLGFR+D+EFILD++P++R
Sbjct: 121 LSAGAHIVVGTPGRLRDHIERGSFDTSALRTVVLDEADEMLDLGFREDLEFILDAAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+ P I +LAK +Q+DA R++  +   QH+DI+YRA+ VA +DR+NAI+N+LR
Sbjct: 181 RTLLFSATVPPQIESLAKRFQRDAQRISTVTNREQHADIEYRAMQVAPNDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ A+N I+FC TR  V   +  L    F VVALSGELSQ ER++AL  MR+GRARVC+A
Sbjct: 241 FYEAQNTIIFCGTREMVKHLSARLGNRGFAVVALSGELSQAERNHALGAMRNGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +N E LLHRSGRTGRAGRKG+   V+P   +R A RL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNAETLLHRSGRTGRAGRKGVCTLVVPHTRRRSATRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A V   W PAP+ + IR++D +RIL      ++   ++  MV  LL K  PE+IAA +
Sbjct: 361 GFAKVKAEWGPAPTAQQIRDKDRERILASTDLQEAPSEEDLPMVQELLEKFTPEQIAAAY 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +R    GL APEE+   S      + R D             F    WF L+VG K  AE
Sbjct: 421 MRQIHQGLPAPEELLASSFEDRERKPRKD-------------FDNGVWFRLNVGRKHNAE 467

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DKGIQLKYL 536
            RWL+PM+CR+  I ++ IG+IR+    +  E+ A   D  + TVK     +K I +  +
Sbjct: 468 PRWLLPMICRAGHITKKDIGSIRIFDADSRFELDAKLADKFQETVKENGTGEKSITITRI 527

Query: 537 GG 538
            G
Sbjct: 528 EG 529


>gi|154245535|ref|YP_001416493.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154159620|gb|ABS66836.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 609

 Score =  345 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 271/572 (47%), Positives = 375/572 (65%), Gaps = 14/572 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  AL+ER Y + T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A TLL  ++R
Sbjct: 5   PALARALAERDYNDPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMADTLLGTDER 64

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA+AP AL +APTRELA+QV RE EWLYA TG  +  C+GG+   +E+R L  GAH+V
Sbjct: 65  FGPATAPQALVVAPTRELALQVQREFEWLYAATGARIVSCVGGMDPRQEQRALSRGAHMV 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH+    L+IS ++ VVLDEADEMLDLGFR+D++FILD++P +RR L+FSAT
Sbjct: 125 VGTPGRLRDHLERGRLDISAVRVVVLDEADEMLDLGFREDLQFILDATPPERRSLLFSAT 184

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   IT LAK YQ++A+R+ +AS    H+DI+YRA+ V   + ++A+VN+LR++ A +AI
Sbjct: 185 LPRGITMLAKRYQREALRIEVASAEGGHADIEYRAMRVVPKEIEHAVVNVLRFYDAPSAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TR +V      L E  F  VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGI
Sbjct: 245 VFCNTRETVRHLHATLQERQFSAVALSGELSQNERNSALQALRDGRARVCVATDVAARGI 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P   +RR E + R   ++  
Sbjct: 305 DLPSLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDMLRGMGLTPA 364

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   P+ + IR+ D +R+L+DPL  D    ++  +   LL +   E + A  +R++RAGL
Sbjct: 365 WSGPPTADEIRKLDHERMLRDPLLTDEPNEEDAAVARALLEQQPAEHLVAALVRLYRAGL 424

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            +PEE+       GRD      RA   G G      G +WF L++G + KA+ RWL+P++
Sbjct: 425 PSPEEVADPGEPRGRD------RAAARGLGGPGGAGGGAWFRLNIGRRNKADPRWLLPLI 478

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG--IQLKYLGGEKPDFRGY 546
           CR   + R  IGAIR+  + T  EVSA  +D    + +   G  + ++ L G  P  R  
Sbjct: 479 CRRGNVTRDDIGAIRIFDEETAFEVSAAALDRFSTSARKSDGSDVIIEPLPGGAPSSRPE 538

Query: 547 KSSGF------KSKNSQDGATKRFKRFKGASK 572
           + +        K +  + G  K  +   G +K
Sbjct: 539 RPAPRWKGPQDKQRYDKPGYEKPGQDRPGRAK 570


>gi|329123747|ref|ZP_08252307.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
 gi|327469946|gb|EGF15411.1| ATP-dependent RNA helicase DeaD [Haemophilus aegyptius ATCC 11116]
          Length = 613

 Score =  344 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 173/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|145631096|ref|ZP_01786871.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|144983381|gb|EDJ90863.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
          Length = 614

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 171/601 (28%), Positives = 278/601 (46%), Gaps = 36/601 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPD-------------FRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            L+K +Q+ +LG  K D              RG    G + +N ++G  +  ++F   S 
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGGDFRGERGRNERNGDNRGNRKFNEKSN 599

Query: 573 N 573
            
Sbjct: 600 R 600


>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
           86-028NP]
 gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
           86-028NP]
          Length = 613

 Score =  343 bits (880), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 173/588 (29%), Positives = 274/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q+A +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|153007483|ref|YP_001368698.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559371|gb|ABS12869.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score =  343 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 288/607 (47%), Positives = 388/607 (63%), Gaps = 39/607 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E I   +  AL+ RGY  LT+VQ A+L P+  + D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPETIAPALSGALAARGYNTLTAVQNAVLAPETLDADLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L    RFS A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEGELRFSDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S L+AVVLDEADEMLD+GFR+D+EFIL  +PK R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPKDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q DA+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + + ++  L  ++ PE+IAA F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQDLLKALTERYTPEQIAAAF 420

Query: 421 LRIHRAGLCAPEEIT-----PVSLVSGRDRFRDDSRAFKVGG---------------GSR 460
           L    A   A EE++     PV     RDRF    R+ +                    R
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDRGDRFERGERRERGEPGERFDR 480

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
           +      WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D 
Sbjct: 481 NASFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITASKADE 540

Query: 521 LRRTVKL----DKGIQLKY--------------LGGEKPDFRGYKSSGFKSKNSQDG-AT 561
            RR+V+     +KG+ ++                GG KP     K  GF+     DG   
Sbjct: 541 FRRSVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKSKEGGFRDGYKSDGYKG 600

Query: 562 KRFKRFK 568
            R K  K
Sbjct: 601 DRSKGDK 607


>gi|298291272|ref|YP_003693211.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927783|gb|ADH88592.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 619

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 271/567 (47%), Positives = 372/567 (65%), Gaps = 11/567 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  +L+ R Y N T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A TLL  ++R
Sbjct: 5   PALARSLAARDYDNPTPVQLAVLAPEASGRDLLVSAQTGSGKTVAYGLAMAETLLGVSER 64

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F+ A+ P AL +APTRELA+QV RE  WLYA TG  +  C+GG+   +E+R L  GAH+V
Sbjct: 65  FAAATVPQALVVAPTRELALQVQREFAWLYAATGARIVSCVGGMDPRQEQRLLNQGAHVV 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH+    L++S L+  VLDEADEMLDLGFR+D+EFILD++P +RR L+FSAT
Sbjct: 125 VGTPGRLRDHLERGRLDLSALRVAVLDEADEMLDLGFREDLEFILDATPPERRSLLFSAT 184

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  ITTLA+ YQ+DA+R+ +AS    H+DI+YR + VA ++ ++A+VN+LRY+   +AI
Sbjct: 185 MARGITTLARRYQRDALRIEVASAEGGHADIEYRTMRVAPTEVEHAVVNVLRYYDTPSAI 244

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TR +V R   +L E  F  VALSGELSQ ER++ALQ +RDGRARVC+ATDVAARGI
Sbjct: 245 VFCNTREAVRRMHAMLQERQFSAVALSGELSQNERNHALQALRDGRARVCVATDVAARGI 304

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L LVIHA+L ++ E+L HRSGRTGRAGRKG+SV ++P   +RR E L R   +   
Sbjct: 305 DLPNLGLVIHADLPNDAESLQHRSGRTGRAGRKGVSVLLVPPFRRRRTEDLMRALGIKPS 364

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   P+ E IR+ D +R+L+DPL  D    ++      LLA H PE +AA  +R++RAGL
Sbjct: 365 WSGPPTSEDIRKLDHERMLRDPLVADEPNEEDASAGLALLAAHSPEHLAAALVRLYRAGL 424

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+       G  R   D  A +  GG+     GS WF L+VG ++ A+ +WL+P++
Sbjct: 425 PAPEEVAD----PGEPRAARDLAAGRDFGGASGA--GSVWFRLNVGRRKNADPKWLLPLI 478

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG--IQLKYLGG--EKPDFR 544
           CR   + R+ IG IR+  + T  EVS    D   +      G  + ++ L G  E    R
Sbjct: 479 CRRGNVTRKDIGVIRIFDEETAFEVSLAAADRFGKVASKADGDDVIIERLPGPPEGHSAR 538

Query: 545 GYKSSGFKSKNSQDGATKRFKRFKGAS 571
             +    +     +    R K+F+   
Sbjct: 539 PARGKPMRGLPPSE-KPSRGKKFRNGP 564


>gi|148825485|ref|YP_001290238.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229846320|ref|ZP_04466428.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|89892371|gb|ABD78963.1| HI0231-like protein [Haemophilus influenzae]
 gi|148715645|gb|ABQ97855.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|229810413|gb|EEP46131.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 613

 Score =  342 bits (877), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 171/600 (28%), Positives = 277/600 (46%), Gaps = 35/600 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q+A +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQACIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAHGSRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQAMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPD----------FRGYKSSGFKSKNSQDGA--TKRFKRFKGASKN 573
            L+K +Q+ +LG  K D           R  + S F+ +  ++     +  ++F   S  
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRGSDDFNGKRKGRGSDFRGERGRERGNDNRGNRKFNEKSNR 599


>gi|332186811|ref|ZP_08388553.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332013144|gb|EGI55207.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 580

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 265/542 (48%), Positives = 345/542 (63%), Gaps = 20/542 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P V+  ALS RGY   T VQ A++  D + +D++VSAQTGSGKTVAFGLA+AS LL
Sbjct: 3   FSALPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              D   PA AP+AL IAPTRELA+QV RELEWLYA     +A C+GG+   RERR L +
Sbjct: 63  QGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRALNH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD++P +RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ +A R+   SE++ H+DI Y+ V VA +D + A+VN+LR H 
Sbjct: 183 LFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRLHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 AEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E+  + E L HRSGRTGRAGRKG ++ ++P   +RR E + R A
Sbjct: 303 AARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP++E IRE+D +R+L   L    +   ++++   LLA+   E IAA  +R 
Sbjct: 363 RIDAEWRRAPTLEEIREQDRERLLTALLAPVEVDEADRELATRLLAEKSAEDIAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA L   EE+        R+R                 F  + WF +SVG +Q A+ RW
Sbjct: 423 HRAALPQAEELVEGDAPPPRERREG--------------FDDTVWFRMSVGRRQNADPRW 468

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK------LDKGIQLKYLG 537
           L+P++CR   I R  IGAIR+QP+ T  EV           +K       +  I ++   
Sbjct: 469 LLPLICRRGHITRNEIGAIRIQPNETLFEVPTALASRFVAALKRTEADHAEDDIAIEQAD 528

Query: 538 GE 539
           G 
Sbjct: 529 GP 530


>gi|145632474|ref|ZP_01788208.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144986669|gb|EDJ93221.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 613

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 276/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  +   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNNPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|148827371|ref|YP_001292124.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
 gi|148718613|gb|ABQ99740.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 613

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFIAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|239830975|ref|ZP_04679304.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823242|gb|EEQ94810.1| DEAD-box ATP-dependent RNA helicase ydbR [Ochrobactrum intermedium
           LMG 3301]
          Length = 641

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 285/604 (47%), Positives = 389/604 (64%), Gaps = 36/604 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E I   +  AL+ RGY  LT+VQ A+L  +  + D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPETIAPALSGALAARGYNTLTAVQNAVLASETLDADLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI    L++S L+AVVLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPENR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q DA+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NPE +LHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F  S++ + + ++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQGKTNERILNAEVFNQSVEEEYQDLLKALTERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEIT-----PVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------- 464
           L    A   A EE++     PV     RDRF    R+ +     R +             
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDRGDRFERRDRGEPGERFDRNAQ 480

Query: 465 -GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
               WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  RR
Sbjct: 481 FDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITASKADEFRR 540

Query: 524 TVKL----DKGIQLKY--------------LGGEKPDFRGYKSSGFKSKNSQDG-ATKRF 564
           +V+     +KG+ ++                GG KP    +K  GF+     DG    R 
Sbjct: 541 SVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKFKEGGFRDGYKSDGYKGDRS 600

Query: 565 KRFK 568
           K  K
Sbjct: 601 KGDK 604


>gi|332140113|ref|YP_004425851.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550135|gb|AEA96853.1| ATP-dependent RNA helicase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 589

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 173/581 (29%), Positives = 274/581 (47%), Gaps = 26/581 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P  L +APTRELA+QV    +   + +  +  +   GG S   + R L+ G
Sbjct: 73  QRK------PQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P++R+  +
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPEERQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + Y KD   V IAS+    S I  R   +A   +  A+  I+     
Sbjct: 187 FSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEVF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV 
Sbjct: 247 DGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + +   
Sbjct: 307 ARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTTK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----DPEKIAAGF 420
             +   P PS+  I E    R  Q           E  M  V + K      PE I A  
Sbjct: 367 QPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPETIMAAL 426

Query: 421 LRIHRAGLC------APEEITPVSLVSGRDRFRDD-----SRAFKVGGGSRDNFKGSSWF 469
           L+I +             +I        RDR   D      R  +V  G+R   +G   F
Sbjct: 427 LKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPEEGMQRF 486

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG    A+   ++  +   + IN + IGAI +  + + V++      +  D L  T 
Sbjct: 487 RIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRDTLSGTR 546

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
              + + ++      P   G  S G K   +  G  +  KR
Sbjct: 547 VAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKR 587


>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
 gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
           6P18H1]
          Length = 613

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 276/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 613

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 277/588 (47%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR + LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++E   ++    +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQEYRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 631

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/609 (27%), Positives = 268/609 (44%), Gaps = 43/609 (7%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L + + A+        AP  L +APTRELAVQV             V  V   GG  
Sbjct: 61  SLPLLNNIKAD------LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + +  D   V I S      DI      V    ++ 
Sbjct: 175 AQIPAEHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE--KKMVDVLL 408
           R    + R   +++     P+ E + +R   +    +Q  L    +         +    
Sbjct: 355 RLLRNIERTMKLTIPEVDLPNAELLGQRRLAQFAGKVQQQLESSDLDMYRALLSKLQPQQ 414

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPV-----------------SLVSGRDRFRDDSR 451
            + D E +AA  L++ +          PV                       DR   + R
Sbjct: 415 EELDIETLAAALLKMAQGERPLILPPDPVVERRPRREFRERDERFERRGDRNDRGDRNDR 474

Query: 452 AF----KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
           A     +     R +      + + VG     E R ++  +     I+ + IG I++   
Sbjct: 475 APRGDDRPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 534

Query: 508 LTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            + +E+      D +    RT  L+K + ++ +G  +P  R  +  G    +        
Sbjct: 535 HSTIELPKGMPGDLLSHFTRTRILNKPMNMQLMGDAQPHERRERREGADRGDRGARGFSE 594

Query: 564 FKRFKGASK 572
                G  +
Sbjct: 595 RPAGNGRGR 603


>gi|145637208|ref|ZP_01792870.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269653|gb|EDK09594.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 613

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 273/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|157368742|ref|YP_001476731.1| ATP-dependent RNA helicase DeaD [Serratia proteamaculans 568]
 gi|157320506|gb|ABV39603.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 653

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 169/606 (27%), Positives = 273/606 (45%), Gaps = 42/606 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 7   TSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L       +   AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 67  HNLD------ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP----- 413
           + R   +++     P+VE + ER   +          ++  +  M   LLAK  P     
Sbjct: 361 IERTMKLTIPEVELPNVELLGERRLAKFAAK--VQQQLESSDLDMYRGLLAKLQPGEEEL 418

Query: 414 --EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF----------------RDDSRAFKV 455
             E +AA  L++ +          PV     R  F                       + 
Sbjct: 419 EMETLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGSDRRRDARPDSRDGGAER 478

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 479 PRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIELPK 538

Query: 516 ----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS----GFKSKNSQDGATKRFKRF 567
               + +    RT  L+K + ++ LG  +P  R  + +    G +   ++    +R +  
Sbjct: 539 GMPGEILSHFTRTRILNKPMNMQLLGDAQPHERRERPAPAGNGERRGGARPFNGERREGA 598

Query: 568 KGASKN 573
               ++
Sbjct: 599 NPGRRS 604


>gi|145640153|ref|ZP_01795737.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274739|gb|EDK14601.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 613

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 273/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAHGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPKEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|312115353|ref|YP_004012949.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220482|gb|ADP71850.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 570

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 277/575 (48%), Positives = 372/575 (64%), Gaps = 22/575 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
             + +P +  EAL+++GY  LT VQ A+L  D+ E D+LVSAQTGSGKTVAFGLA+ASTL
Sbjct: 2   TIDGVPPLFAEALAKQGYTTLTDVQRAVLEEDVGESDLLVSAQTGSGKTVAFGLAMASTL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   DRF   S PLA+ +APTRELA+QV  ELEWLYA  G  +A C+GG+ + +ERR L 
Sbjct: 62  LRGEDRFPANSEPLAVLVAPTRELALQVRLELEWLYAPAGARIASCVGGMDMRQERRSLA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRL DHI    L+++ ++A+VLDEADEMLDLGFR+D+EFIL ++P +RR 
Sbjct: 122 GGAHIVVGTPGRLRDHITRGSLDMASVRAMVLDEADEMLDLGFREDLEFILKAAPPERRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT++  I TLA+ +QK+A+R++  +   QH++IDYRAV VA  +R+NA++N+LR+ 
Sbjct: 182 LMFSATVAKPIETLARRFQKNAIRISANTGATQHANIDYRAVAVASGERENAVINVLRFF 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A +A VFC+TR  V      L    F VVALSGELSQ ER+  LQ MRDGRA+VC+ATD
Sbjct: 242 EASSAFVFCTTREGVKHLASRLGNRGFGVVALSGELSQTERTRGLQAMRDGRAQVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RGIDLP L+LVIHA+L  + E LLHRSGRTGRAGR G+SV + P + +R  ++L + 
Sbjct: 302 VASRGIDLPTLDLVIHADLPKDGEALLHRSGRTGRAGRSGVSVLITPHSKRRTVDKLLQA 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A V V W P PS E I +RD +R++ DP     +  +E      LLA   PE+IAA F R
Sbjct: 362 AKVKVSWMPVPSAETIIQRDRERLMNDPSLEGPLTDEEADFARDLLATKSPEQIAAAFFR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            ++     PEE            F D  R        R +F+G  WF +SVG KQ+AE R
Sbjct: 422 QNQTRRPTPEE------------FVDSGRDASEVEAPRGDFEGGVWFRVSVGRKQRAEPR 469

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKYLGG 538
           W++P++C++  +  + IGAI++    +  EVSA       R    T + D  I +  + G
Sbjct: 470 WILPLICKAGDVTSREIGAIQILEGESMFEVSARAAPDFTRALAQTGRRDDTITIVPMNG 529

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +P+ R   +   +S     GA KR ++  GA   
Sbjct: 530 -RPEPRASYADSPRS-----GAMKRSRKMPGARGR 558


>gi|16272194|ref|NP_438403.1| ATP-dependent RNA helicase [Haemophilus influenzae Rd KW20]
 gi|260580884|ref|ZP_05848709.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
 gi|1169261|sp|P44586|DEAD_HAEIN RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1573195|gb|AAC21900.1| ATP-dependent RNA helicase (deaD) [Haemophilus influenzae Rd KW20]
 gi|260092507|gb|EEW76445.1| ATP-dependent RNA helicase [Haemophilus influenzae RdAW]
          Length = 613

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+R     R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|317493632|ref|ZP_07952053.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918575|gb|EFV39913.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 636

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 174/609 (28%), Positives = 278/609 (45%), Gaps = 42/609 (6%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I +AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETSFADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L   +           AP  L +APTRELAVQV   +         V  V   GG  
Sbjct: 61  SLPLLHNIDPS------LKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ 
Sbjct: 175 AQIPAQHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+V  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA--- 409
           R    + R   +++     P+ E + +R   +   +    L+S   D+ + +   L    
Sbjct: 355 RLLRNIERIMKLTIPEVEIPNAELLGQRRLAKFAAKVQQQLESSDLDKYRDLLTKLQPED 414

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSL--------------VSGRDRF-RDDSRAFK 454
           + D E +AA  L++ +          PV                  G DRF R   R  +
Sbjct: 415 ELDMETLAAALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPR 474

Query: 455 VG-----GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
                     R +      + + VG     E R ++  +     I+ + IG I++    +
Sbjct: 475 EAREGAPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHS 534

Query: 510 FVEVSA----DGVDLLRRTVKLDKGIQLKYLGG-EKPDFRGYKSSGFKSKNSQDGATKRF 564
            +E+      D +    RT  L+K + ++ +G     + R  + +G +   S  G  + F
Sbjct: 535 TIELPKGMPGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRSAGGERRSF 594

Query: 565 KRFKGASKN 573
               GA + 
Sbjct: 595 GGRDGAPRR 603


>gi|309750350|gb|ADO80334.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2866]
          Length = 613

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 170/588 (28%), Positives = 273/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWF 469
           AA  L + +          P      R+      R         +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRREHNERGDRRENPRSAERRGERKGYGNPRPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D        F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-GDDFNGKRKGRGGDFRGERGRERGND 586


>gi|207858530|ref|YP_002245181.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710333|emb|CAR34691.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 629

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 172/625 (27%), Positives = 273/625 (43%), Gaps = 60/625 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-------- 461
           D E +AA  L++ +    L  P +         RDR     R     G   D        
Sbjct: 420 DLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRERNDRGPRGDREERPRRE 479

Query: 462 --NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
             +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK------------ 552
           + +    RT  L+K + ++ LG   P            F G +  G +            
Sbjct: 540 EVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRG 599

Query: 553 -----SKNSQDGATKRFKRFKGASK 572
                S   ++    R     G  +
Sbjct: 600 DGRRFSGERRESRGPRRDDSTGRRR 624


>gi|205354184|ref|YP_002227985.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273965|emb|CAR38970.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629305|gb|EGE35648.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 618

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 170/617 (27%), Positives = 269/617 (43%), Gaps = 58/617 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-------- 461
           D E +AA  L++ +    L  P +         RDR     R     G   D        
Sbjct: 420 DLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRERNDRGPRGDREERPRRE 479

Query: 462 --NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
             +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPD--------------------------FRGYKSS 549
           + +    RT  L+K + ++ LG   P                           F G +  
Sbjct: 540 EVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRGDGRRFSGERRE 599

Query: 550 GFKSKNSQDGATKRFKR 566
               +       +RF  
Sbjct: 600 SRGPRRDDSTGRRRFGG 616


>gi|253991496|ref|YP_003042852.1| ATP-dependent RNA helicase DeaD [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
           helicas dead) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
          Length = 635

 Score =  340 bits (870), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 167/590 (28%), Positives = 270/590 (45%), Gaps = 30/590 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE 
Sbjct: 19  LSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV             V  V   GG     + R L+ G 
Sbjct: 78  -----LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 133 QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + +  D   V I +      DI      V    ++ A+V  L      
Sbjct: 193 SATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 253 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 313 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
           ++     P+ E + +R  ++   +    L+S   D+ + +   L      D E +AA  L
Sbjct: 373 TIPEVELPNAELLSQRRLEKFAANVQQQLESSDLDQYRALLSKLQPAEDLDIETLAAALL 432

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---------KGSSWFSLS 472
           ++ +          PV         RDD R                          + + 
Sbjct: 433 KMAQGERPLILPPDPVRRPRREFNERDDRRRNGFDDRGERGDRPRRERRDVGEMELYRIE 492

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLD 528
           VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  L+
Sbjct: 493 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 552

Query: 529 KGIQLKYLGGEKP------DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           K + ++ +G  +P         G   +G   +  ++      +RF G  +
Sbjct: 553 KPMNMQLMGDAQPFERRERRGGGRNGNGNAPRRDRESFNGGGRRFSGERR 602


>gi|309972622|gb|ADO95823.1| ATP-dependent RNA helicase DeaD [Haemophilus influenzae R2846]
          Length = 613

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 273/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DI+     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIEQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-------NFKGSSWF 469
           AA  L + +          P      R+R     R        R        N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNDRGDRRENPRSAERRGECKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|296114606|ref|ZP_06833259.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295978962|gb|EFG85687.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 593

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 258/546 (47%), Positives = 345/546 (63%), Gaps = 2/546 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL E+GY N T VQ A+L+     +D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPETHPALQRALDEQGYENPTPVQTAVLDVAADGRDLLVSAQTGSGKTVAFGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ++R  PA APLA+ IAPTRELA+QV REL WLYA  G  +  CIGG+   RE R LQ 
Sbjct: 63  GGDERLGPAGAPLAVIIAPTRELAMQVTRELTWLYAAAGARIVSCIGGMDARREARALQI 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L ++ L+ VVLDEADEMLDLGFRD++E +LD+ PK RR L
Sbjct: 123 GAHIVVGTPGRLCDHLSRGRLVMTDLRVVVLDEADEMLDLGFRDELEQLLDAMPKTRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I +LAK YQ DA+R++  S  +QH+DI+YRA+L    +   ++VN+LR   
Sbjct: 183 LFSATIAREIASLAKRYQHDALRIDTLSGTKQHADIEYRALLTDAREIIPSVVNVLRETD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   +VFC+TR  V      L E  F  VALSGEL Q ER+ A+  +R G+A VC+ATDV
Sbjct: 243 SPTTMVFCATRELVRHLQSALVERGFSSVALSGELGQAERTRAIDSLRKGQASVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LV+HA L ++P  LLHRSGRTGRAGRKG+ V ++P + +RRAERL   A
Sbjct: 303 AARGIDIPALALVVHASLPTDPATLLHRSGRTGRAGRKGVCVLMVPVSQRRRAERLMMGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +S  W   PS E IR  D QR+L DP    ++   + +++  L   H PE++AA  LR 
Sbjct: 363 KISATWSAVPSAEEIRVLDTQRLLADPALSAAVPEADHELIARLTEGHSPEQLAAALLRS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L  PE +  ++  + R    +  RA + G       +  SWFS+SVG + KA+ +W
Sbjct: 423 YRAHLPQPENVRQITPDT-RAPRAEGPRAPREGR-DHAPREPGSWFSMSVGRQDKADPKW 480

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           L+P++CR  G+ +  IGAIR+    T  E++ D  +     +      +++      P  
Sbjct: 481 LVPLICRLGGVRKSDIGAIRIADTQTLFEITPDTAEKFSSCIAAIDNDEVQIAPASAPPG 540

Query: 544 RGYKSS 549
            G    
Sbjct: 541 GGMGPR 546


>gi|126736373|ref|ZP_01752115.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
 gi|126714194|gb|EBA11063.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. CCS2]
          Length = 692

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 294/568 (51%), Positives = 385/568 (67%), Gaps = 16/568 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+++GY +LT VQEA+ +  L  +D+LVSAQTGSGKTV FGLA+  T+LAE+  F 
Sbjct: 5   LADALAKQGYTDLTPVQEAVTDDALVGQDLLVSAQTGSGKTVGFGLAIGPTILAEDGTFG 64

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           PA  P AL IAPTRELA+QV REL+WLYA  G  +A C+GG+    ERR L+ GAHIVV 
Sbjct: 65  PAGRPHALIIAPTRELALQVKRELQWLYAGAGATLASCVGGMDFRDERRSLERGAHIVVA 124

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    +++S +KAVVLDEADEMLDLGFR+D+EFIL  +P +RR LMFSAT+ 
Sbjct: 125 TPGRLRDHIMRGTIDLSDIKAVVLDEADEMLDLGFREDLEFILGEAPPERRTLMFSATVP 184

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           P I TLAK+YQ+DAVR+  A++ +QHSDI+YRA+ VA  D D AI+N+LRY+ A NAIVF
Sbjct: 185 PMIATLAKSYQRDAVRIATATKEKQHSDIEYRALSVANHDTDAAIINVLRYYDAPNAIVF 244

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +TRA V+R T  L+   F VVALSGEL+Q ERSNALQ MRDGRA+VC+ATDVAARGIDL
Sbjct: 245 ANTRAMVTRLTTRLSNRGFSVVALSGELTQSERSNALQAMRDGRAKVCVATDVAARGIDL 304

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P+LELVIHAEL +N E LLHRSGRTGRAGRKG+S  ++P  M+RR E L +   ++  W 
Sbjct: 305 PNLELVIHAELPTNAETLLHRSGRTGRAGRKGISAMIVPAKMKRRGENLLKWGKLTATWA 364

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
             P+ E ++ RD +R+L D ++      DE+     LL +HD EKIAA +LR++     A
Sbjct: 365 TPPTAEEVQARDEERLLTDEVWSADFTEDEQAFAKRLLDQHDAEKIAAAYLRLYAGKQSA 424

Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
           PE I+          ++D   A +       +F  S WFS+ +G + KAEARWL+PM+C+
Sbjct: 425 PEFISE---------YKDGPAAKERKPREAKSFGPSKWFSIDIGREGKAEARWLLPMICK 475

Query: 491 SSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGG-EKPDFRG 545
           + GI +  IGAIR+QP+  F+E+SA  V    ++    +KL+    LK L G  +   RG
Sbjct: 476 AGGITKNEIGAIRIQPNEAFIEISAPAVPGFLKSVGSDMKLENQGTLKALDGAPQLGERG 535

Query: 546 YK--SSGFKSKNSQDGATKRFKRFKGAS 571
            +     +  +  Q G  KR    K   
Sbjct: 536 PRKTKRDYDDRPKQGGKPKRDYGDKPKR 563


>gi|148556699|ref|YP_001264281.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148501889|gb|ABQ70143.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 593

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 269/540 (49%), Positives = 353/540 (65%), Gaps = 10/540 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P+ + EA++ERGY   T VQ  ++  +  ++D+LVSAQTGSGKTVA+GLA+A TLL
Sbjct: 3   FSSLPRPVAEAITERGYTAPTPVQAQVIAAEAHDRDLLVSAQTGSGKTVAYGLAIAETLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +    A  PLAL IAPTRELA+QV REL+WLYAK G  V  C+GG++V  E+R L  
Sbjct: 63  QGAEALPRAGEPLALIIAPTRELALQVQRELQWLYAKLGARVVSCVGGMNVRVEQRQLSY 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLDLGFR+D+E ILD +P +RR L
Sbjct: 123 GCHIVVGTPGRLKDHLERGALQPGSLRAVILDEADEMLDLGFREDLEEILDLTPPERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LAK YQ+DA+R+   SE   H+DIDYRA+ VA +D  NA+VN+LR+H 
Sbjct: 183 LFSATMPKPIALLAKRYQRDALRIQTTSERESHADIDYRAMAVAPADIQNAVVNVLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK A+VFC+TR +V R +  L E  F  V LSGELSQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AKGAMVFCATRENVRRLSATLTERGFSAVTLSGELSQNERNHALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP LELVIHAEL  +PE L HRSGRTGRAGRKG  V + P   +R AERL R A
Sbjct: 303 AARGIDLPGLELVIHAELPIDPETLQHRSGRTGRAGRKGTCVLITPYQRRRHAERLLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           NV+  W+  P+ + I  RD +R+L+  L +  I  ++  +   LL     E+IAA F+R 
Sbjct: 363 NVNATWDKVPTPDEIYARDQERLLE-SLSVGEISDEDLDVARKLLETRSAEEIAAAFVRT 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            R  L APE++   S ++     R D        G R  F+ + WF ++VG    A+ RW
Sbjct: 422 QRQSLPAPEDLIDASPIA-----RGDREQATREQGPRPGFEDTVWFRMNVGRGANADPRW 476

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGGE 539
           L+P+LCR   I ++ +GAIR+    T  E+         D L+RT   + G+ ++  G  
Sbjct: 477 LLPLLCRRGHITKREVGAIRIFQTETRFEIPRAIAGKFTDALKRTAGEEDGVVIEPAGDA 536


>gi|163758459|ref|ZP_02165547.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162284748|gb|EDQ35031.1| ATP-dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 729

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 308/578 (53%), Positives = 388/578 (67%), Gaps = 13/578 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M    +I   I  AL++RGY  LT VQE++L P+LR+ D+LVSAQTGSGKTVAFG++LA 
Sbjct: 1   MTSRTDIHSAIDRALTKRGYDALTPVQESMLAPELRDADLLVSAQTGSGKTVAFGISLAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+ E DR   A  PLA+ IAPTRELA+QV REL WLYA+ G  +A C+GG+++  ERR 
Sbjct: 61  TLMGEEDRLPRAETPLAIVIAPTRELALQVERELAWLYAEAGAQIATCVGGMNMMTERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GAHIVVGTPGRL DHI    LN++ ++AVVLDEADEMLDLGFRDD+EFILD++P +R
Sbjct: 121 LQRGAHIVVGTPGRLRDHIERGSLNLTSIRAVVLDEADEMLDLGFRDDLEFILDAAPDQR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK YQ  AVRV  A E +QH DI+YRA+ VA +DR+NA++N+LR
Sbjct: 181 RTLMFSATVPSGIANLAKRYQTKAVRVTTAGEQKQHLDIEYRALSVAPNDRENAVINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ AKNAIVFCSTRA+V+  T   +   F VVALSGELSQ ERS+ALQ +RDGRA+VC+A
Sbjct: 241 FYDAKNAIVFCSTRATVNHLTARFSNRGFAVVALSGELSQNERSHALQALRDGRAKVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLPDLELVIHA+L  +PE LLHRSGRTGRAGRKG+S  ++P N +RR ERL 
Sbjct: 301 TDVAARGLDLPDLELVIHADLPKSPETLLHRSGRTGRAGRKGVSAMIVPYNARRRTERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A +S  W   PS E I  RD +R+L DP F   I  DE  MV  LL +H PEK+AA  
Sbjct: 361 SDARISAAWARPPSAEEILARDDERLLADPHFEAEIGEDEADMVKALLERHGPEKVAAAL 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +R HRAG  APEE+     V+            +         + + WFSLS+G KQ AE
Sbjct: 421 MRAHRAGRSAPEELIENGPVTAP-----GGTYPERAPRDHVALQNAVWFSLSLGRKQSAE 475

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKYL 536
            RWL+PMLCR+  I +  IG+IR+    T VE+S D           + K++K I +  L
Sbjct: 476 PRWLLPMLCRAGHITKAEIGSIRILDLETHVEISGDSAAKFEASIGPSRKIEKNITVTRL 535

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRF---KRFKGAS 571
            G  P          +   + +GA   +   +R  GAS
Sbjct: 536 EGV-PQAPARAPRPPRPPRAAEGAGAPYAPRERAAGAS 572


>gi|50119665|ref|YP_048832.1| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610191|emb|CAG73633.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 637

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 178/619 (28%), Positives = 277/619 (44%), Gaps = 52/619 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L
Sbjct: 5   FTSFSDLGLSAPIINALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFALPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            + L  E        AP  L +APTRELAVQV             V  V   GG     +
Sbjct: 65  LNNLKPE------LKAPQMLVLAPTRELAVQVAEACSDFAKHMHGVNVVALYGGQRYDVQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P
Sbjct: 119 LRALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V 
Sbjct: 179 ATHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R   
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMV---DVLLAKHDP 413
            + R   +++     P+ E + +R   +   +  L L+S   D  + +        + D 
Sbjct: 359 NVERTMKLAIPEVELPNAELLGQRRLAKFAAKVQLQLESSDLDMYRALLTKMQPQEELDI 418

Query: 414 EKIAAGFLRIHRAG----LCAPEEITPVSLVSGRD--------------RFRDDSRAFKV 455
           E +AA  L++ +      L       P      RD              R   DSR  + 
Sbjct: 419 ETLAAALLKMAQGERPLILPPEPAFRPRREFRDRDESRSDSRGDRRREPRDARDSREPRD 478

Query: 456 G----GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
           G       R        + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 479 GDRPQRRERRESGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTI 538

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGE--KPDFR-----------GYKSSGFKSK 554
           E+      D +    RT  L+K + ++ LG    +P+ R           G +  G   +
Sbjct: 539 ELPKGMPGDLLSHFTRTRILNKPMNMQLLGDAVAQPERRGGGRPAGAGTGGERRDGAAPR 598

Query: 555 NSQDGATKRFKRFKGASKN 573
            S  G  +R     G  + 
Sbjct: 599 RSFGGGERREGNANGGERR 617


>gi|269137769|ref|YP_003294469.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
 gi|267983429|gb|ACY83258.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda EIB202]
          Length = 634

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/611 (27%), Positives = 275/611 (45%), Gaps = 46/611 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRER 118
           + +           AP  L +APTRELAVQV     ++     G+ V    GG     + 
Sbjct: 66  NNIDPS------LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 180 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R   +++     P+ E +  R   +    +Q  L    +      +  +    + D E
Sbjct: 360 IERTMKLTIPEVELPNAELLSTRRLAKFAARVQQQLESSDLDQYRALLAKLQPEDEQDME 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPV-----------SLVSGRDRFRDDSRAFKVG---GGSR 460
            +AA  L++ +          PV               G DRF    R  + G      R
Sbjct: 420 TLAAALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRFARRERDERGGDRPRRER 479

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
                   + + VG     E R ++  +     I+ + IG IR+    + +E+      D
Sbjct: 480 REVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGD 539

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD---------------GAT 561
            +    RT  L+K + ++ +G      +  + SG +    +                G  
Sbjct: 540 LLTHFTRTRILNKPMNMQLIGDAPAREQRRERSGERGGERRSFGGRDGGRDGDRRSFGGQ 599

Query: 562 KRFKRFKGASK 572
           +RF   +   +
Sbjct: 600 RRFSDDRRGDR 610


>gi|300718571|ref|YP_003743374.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
 gi|299064407|emb|CAX61527.1| Cold-shock DEAD-box protein A [Erwinia billingiae Eb661]
          Length = 645

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 165/600 (27%), Positives = 271/600 (45%), Gaps = 37/600 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +       S   AP  L +APTRELAVQVG  +         +  V   GG     + 
Sbjct: 66  NNID------SSLKAPQILVLAPTRELAVQVGEAITDFSKHMKGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+   
Sbjct: 180 NHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAFGR-KTDALTRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------- 411
           + R   +++     P+ E + ER   +          ++  + +    LL+K        
Sbjct: 359 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLEQYRALLSKMQPAEDEL 416

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--- 468
           D E +AA  L++ +                   + RDD R  +   G R+  +G      
Sbjct: 417 DIETLAAALLKMAQGERPLIVPADAPQRPRREFKERDDRRGDRPERGPREKSEGGERPAR 476

Query: 469 -----------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
                      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 477 RERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGM 536

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             D +    RT  L+K + ++ +G   P  +     G +   +           +G   +
Sbjct: 537 PGDILQHFTRTRILNKPMNMQLIGDAVPHSKERTGGGERRGPAPARGGFGAGNREGGRSD 596


>gi|254425384|ref|ZP_05039102.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
 gi|196192873|gb|EDX87837.1| DbpA RNA binding domain family [Synechococcus sp. PCC 7335]
          Length = 570

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 159/583 (27%), Positives = 285/583 (48%), Gaps = 33/583 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+ +     + +AL + GY   T +Q   + P L  +D++  AQTG+GKT AF L + 
Sbjct: 6   TSFQTLSLIPPVLKALEDAGYETPTPIQALTIPPILDGRDIIGQAQTGTGKTAAFALPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S +   N      S P AL +APTRELA+QV    +   +       +   GG S H + 
Sbjct: 66  SQIDISN------SDPQALVLAPTRELALQVAEAFQSYASHLKGFHVLPIYGGQSYHVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+  AH++VGTPGR+ DHI+   L + +LK +VLDEADEML +GF +D+E+++  +P+
Sbjct: 120 KQLRRAAHVIVGTPGRVIDHIKRGTLKLDNLKFLVLDEADEMLRMGFIEDVEWVISQTPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++ +FSAT+  AI  +A+ Y      + + ++++    I  R   V+   + +A+  I
Sbjct: 180 SRQVALFSATMPAAIRKIAQKYLNSPQELAVKNQSKTADTIRQRFWPVSGYHKLDALTRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        IVF  T+ +    ++ L    +    LSG++ Q +R   ++ +R G+  + 
Sbjct: 240 LEVEDFDGMIVFVRTKVATVELSEKLEARGYNTAPLSGDVPQNQRERTVERLRQGKLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR+G ++  +    +R    
Sbjct: 300 VATDVAARGLDVERISHVINYDMPYDPEAYVHRIGRTGRAGREGEAILFVTPREKRLLSS 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE---- 414
           + R     +     PS E + ++  +R  Q     +++  ++      +L +++ E    
Sbjct: 360 IERSTRQRIERMEMPSTEVVNDQRIERFKQK--ITNALAQEDSAFFTQILEQYEQEHDVP 417

Query: 415 --KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             +IA    ++ +          P+ L       R D      G G+  +  G   F + 
Sbjct: 418 AIEIAGALAKLLQG-------DEPLLLEEKTKPKRRDG-----GSGAATHSVGMERFRVE 465

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLD 528
           VG   + +   ++  +   +G+  + IG I V  D + V+    +  +  +LLR    LD
Sbjct: 466 VGKNHRVKPGHIVGAIANETGLANKYIGRISVYDDYSTVDLPVGIPKETFELLRGVKVLD 525

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             + +  LG  + +    +    + +N++ G   + KR K  +
Sbjct: 526 HPMNITSLGKTRDEGNWREGKPKRRRNTRSGPPFKKKRRKDKA 568


>gi|329295922|ref|ZP_08253258.1| ATP-dependent RNA helicase DeaD [Plautia stali symbiont]
          Length = 617

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/589 (28%), Positives = 274/589 (46%), Gaps = 30/589 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  NNVDPS------VRAPQILVLAPTRELAVQVAEAMTEFSKHMRGINVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L+ +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSSLRGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V + S      DI           + +A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRMQSSITTRPDISQSYWTAYGR-KSDALVRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   ++         ++  +      LLAK  PE+   
Sbjct: 359 IERTMKLTIPEVELPNAELLSQRRLAQLAAK--VQQQLESSDLDQYRALLAKMQPEEELD 416

Query: 416 ---IAAGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              +AA  L++    R  +  P+   P          R   R  +       +      +
Sbjct: 417 METLAAALLKMAQGERPLILLPDAPRPQRREFRDRDERGGDRPRRERR----DVGEMQLY 472

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525
            + VG     E R ++  +     I+ + IG I++    + +E+      + +    RT 
Sbjct: 473 RIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVLQHFTRTR 532

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFK-RFKGASKN 573
            L+K + ++ LG  +P  R  + SG +    +    +    R  GA + 
Sbjct: 533 ILNKPMNMQLLGDAQPHERTERRSGGRDFGGERRGNREGGNREGGAPRR 581


>gi|238918430|ref|YP_002931944.1| ATP-dependent RNA helicase DeaD [Edwardsiella ictaluri 93-146]
 gi|238867999|gb|ACR67710.1| cold-shock deAd box protein a [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/611 (27%), Positives = 274/611 (44%), Gaps = 46/611 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRER 118
           + +           AP  L +APTRELAVQV     ++     GV V    GG     + 
Sbjct: 66  NNIDPS------LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 180 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R   +++     P+ E +  R   +    +Q  L    +      +  +    + D E
Sbjct: 360 IERTMKLTIPEVELPNAELLSARRLAKFGARVQQQLESSDLDQYRALLAKLQPEDEQDME 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPV-----------SLVSGRDRFRDDSRAFKVG---GGSR 460
            +AA  L++ +          P+               G DRF    R  + G      R
Sbjct: 420 TLAAALLKMAQGERPLILPPDPIVERRPRREFRERDERGGDRFARRERDERGGDRPRRER 479

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
                   + + VG     E R ++  +     I+ + IG IR+    + +E+      D
Sbjct: 480 REVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGD 539

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD---------------GAT 561
            +    RT  L+K + ++ +G         + +G +    +                G  
Sbjct: 540 LLTHFTRTRILNKPMNMQLIGDAPAREPRRERNGERGGERRSFGGRDGGRDGDRRSFGGQ 599

Query: 562 KRFKRFKGASK 572
           +RF   +   +
Sbjct: 600 RRFSDDRRGDR 610


>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 639

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 167/591 (28%), Positives = 270/591 (45%), Gaps = 39/591 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE 
Sbjct: 14  LSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV             V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + +  D   V I +      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
           ++     P+ E + +R  +R   +    L+S   D+ + +   L      D E +AA  L
Sbjct: 368 TIPEVELPNAELLSQRRLERFAANVQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALL 427

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---------KGSSWFSLS 472
           ++ +          PV         RDD R          +               + + 
Sbjct: 428 KMAQGERPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 487

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLD 528
           VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  L+
Sbjct: 488 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 547

Query: 529 KGIQLKYLGGEKP---------------DFRGYKSSGFKSKNSQDGATKRF 564
           K + ++ +G  +P               +     S   + + + +G  +RF
Sbjct: 548 KPMNMQLMGDAQPFERRERRGGGRNGNGNGNSSGSGPRRDRENFNGGGRRF 598


>gi|90420716|ref|ZP_01228622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335007|gb|EAS48768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 583

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 262/569 (46%), Positives = 357/569 (62%), Gaps = 1/569 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F      +  AL+ERGYV+ T VQ+A+L P   ++D+LVSAQTGSGKT+A+GLALA TLL
Sbjct: 3   FRTTSTPLAHALAERGYVDPTPVQDAVLEPQAADRDLLVSAQTGSGKTIAYGLALAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E +RF PA AP+AL +APTRELA+QV  EL WLYA+TG  +  C+GG+    E+R L  
Sbjct: 63  GEAERFGPAGAPMALIVAPTRELAMQVTTELAWLYAQTGAEMVTCVGGMDPRAEKRKLAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L I  LKA+VLDEADEML+LGFR+D+EF+L+++P++RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALQIGGLKALVLDEADEMLNLGFREDLEFLLEATPRERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I+++AK YQ+DA+R+     +  H+DI+Y+A+ +A ++ ++A+VN+LR++ 
Sbjct: 183 LFSATLPKLISSMAKRYQRDALRIEATRSSAAHADIEYKAIRIAPNELEHAVVNVLRFND 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A +AIVFC+TR +V   +  L E  F  V LSGEL Q ER+ A+Q +RDGRARVC+ATDV
Sbjct: 243 APSAIVFCNTREAVRHLSSGLLERGFSAVTLSGELGQAERNQAMQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL  EA
Sbjct: 303 AARGIDLPGLALVIHADLPSDAETLQHRSGRTGRAGRKGISVLLVPISRRRKAERLLAEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W   PS +AIR+ D  R+L DP+       D+      LL KH PE IAA   R+
Sbjct: 363 RIRAEWGGTPSADAIRKLDEDRLLTDPVLAQEPGEDDLAAARSLLEKHSPETIAAALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG-SSWFSLSVGSKQKAEAR 482
           +R+ L APE++            +D +   +     RD   G   WF + VG +  A+ +
Sbjct: 423 YRSRLPAPEDVFDPGFGPDPKAGKDFAGKERTPRKERDQASGPMVWFHMDVGRRNNADPK 482

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           W++P+LCR   I RQ IG I++    T  E+S           ++  G  +       P 
Sbjct: 483 WILPLLCRRGKITRQEIGMIKIFDRETKFEISESVAKRFADAAEVSDGDDITISPTGAPG 542

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
                  G   K        R       S
Sbjct: 543 GGDSDRKGGFGKPGGKKPFNRKGGTGPGS 571


>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
 gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 621

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 170/600 (28%), Positives = 275/600 (45%), Gaps = 42/600 (7%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I  ALS+ GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETSFADLGLSAPILNALSDMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVS 113
            L L + +  E        AP  L +APTRELAVQV     E+     GV V    GG  
Sbjct: 61  SLPLLNNVNPE------LKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  +VVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P   +  +FSAT+  AI  + + +  D   V I S      DI      V    ++ 
Sbjct: 175 AQIPDGHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL---A 409
           R    + R   +++     P+ E + +R   +   +    L+S   D+ + +   L   A
Sbjct: 355 RLLRNVERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDQYRALLAKLQPSA 414

Query: 410 KHDPEKIAAGFLRIHRA--GLCAPEEITPVS-----------LVSGRDRFRDDSRAFKVG 456
           + D E +AA  L++ +    L  P +                   G    R      +  
Sbjct: 415 ELDVETLAAALLKMAQGERPLILPPDAPARPRREFRERDDRFERRGDRNDRGPRSDERPA 474

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 475 RRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 534

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD--------FRGYKSSGFKSKNSQDGATKRF 564
              + +    RT  L+K + ++ +G  +P                GF S+ + +G  + F
Sbjct: 535 MPGELLSHFTRTRILNKPMNMQLVGDAQPHERRERREGGERIGGRGFNSERAGNGRGRPF 594


>gi|332160085|ref|YP_004296662.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|33332423|gb|AAQ11420.1| DeaD box RNA helicase [Yersinia enterocolitica]
 gi|318607355|emb|CBY28853.1| cold-shock DEAD-box protein A [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664315|gb|ADZ40959.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862020|emb|CBX72187.1| cold-shock DEAD box protein A [Yersinia enterocolitica W22703]
          Length = 657

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 274/582 (47%), Gaps = 42/582 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELA+QV   L         V  V   GG     + 
Sbjct: 67  HNIDPS------LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + K+   V I S      DI     +V    +++A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +  +R  + 
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +  M   LLAK  PE+   
Sbjct: 361 IERTMKMTIPPVQLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEEGFD 418

Query: 416 ---IAAGFLRIHRA-----------GLCAPEEITPVSLVSGRDRFRDDSRA--------- 452
              +AA  L++ +                 E  T     S R R R+DSR          
Sbjct: 419 IETLAAALLKMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDG 478

Query: 453 -FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +     R +      + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 479 GERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 538

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS 549
           E+      + +    RT  L+K + ++ LG  +P  R  + +
Sbjct: 539 ELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPA 580


>gi|317046747|ref|YP_004114395.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948364|gb|ADU67839.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 640

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 173/608 (28%), Positives = 280/608 (46%), Gaps = 49/608 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I  AL++ GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNESILSALNDMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +           AP  L +APTRELAVQV             V  +   GG     + 
Sbjct: 66  NNIDPN------LKAPQILVLAPTRELAVQVAEAATEFSKHMRGVNVLALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWTAYGR-KTDALVRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +  M   LL+K  PE+   
Sbjct: 359 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLDMYRALLSKMQPEEDLD 416

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF-----------------RDDSRAFKV 455
              +AA  L++ +     P  + P +    R  F                   DSR    
Sbjct: 417 METLAAALLKMAQG--ERPLILPPDAPRPQRREFRDRDDRRDSRDSRDSRGPRDSRDGDR 474

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 475 PRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 534

Query: 516 ----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS--------GFKSKNSQDGATKR 563
               + +    RT  L+K + ++ LG  +P  RG ++         G + + +++G   R
Sbjct: 535 GMPGEVLQHFTRTRILNKPMNMQLLGDAQPFERGERNERRGGGRDFGGERRGNREGGAPR 594

Query: 564 FKRFKGAS 571
             R  G  
Sbjct: 595 EGREGGRR 602


>gi|239996759|ref|ZP_04717283.1| ATP-dependent RNA helicase [Alteromonas macleodii ATCC 27126]
          Length = 596

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 170/590 (28%), Positives = 277/590 (46%), Gaps = 28/590 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDPE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P  L +APTRELA+QV    +   + +  +  +   GG S   + R L+ G
Sbjct: 73  ERK------PQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P++R+  +
Sbjct: 127 VQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + Y KD   V IAS+    S I  R   +A   +  A+  I+     
Sbjct: 187 FSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRIMEVEVF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV 
Sbjct: 247 DGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + +   
Sbjct: 307 ARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTTK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----DPEKIAAGF 420
             +   P PS+  I E    R  Q           E  M  V + K      PE + A  
Sbjct: 367 QPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPEVLMAAL 426

Query: 421 LRIHRAGLC------APEEITPVSLVSGRDRFRDDS----RAFKVGGGSRDNFKGSSWFS 470
           L+I +             +I        R+R   D     R  +V  G+R   +G   F 
Sbjct: 427 LKIAQGDEPLILKESDRPDINSKPQRDSRERNSRDRDGRERKPRVPRGNRKPEEGMQRFR 486

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + VG    A+   ++  +   + IN + IGAI +  + + V++      +  D L+ T  
Sbjct: 487 IEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPEGMPKETRDTLQGTRV 546

Query: 527 LDKGIQLKYLGGEKPDF-RGYKS--SGFKSKNSQDGATKRFKRFKGASKN 573
             + + ++      P   RG +        + +++    R  R     KN
Sbjct: 547 AGQRLNIREWSDTPPAKGRGDRGNRGDRAPRGNREDRPNRGDRENRKRKN 596


>gi|170742785|ref|YP_001771440.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168197059|gb|ACA19006.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 545

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 274/552 (49%), Positives = 349/552 (63%), Gaps = 15/552 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL  RGY   T VQ A+L  D   +D+LVSAQTGSGKTVA+GLALA TLL
Sbjct: 3   FPPLPAPLARALDARGYDEPTPVQAAVLEADHAGRDLLVSAQTGSGKTVAYGLALAETLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E + F    APLAL IAPTRELA+QV REL WLY   G  V  C+GG+   RE R L  
Sbjct: 63  GEAEAFGAPGAPLALVIAPTRELALQVHRELAWLYGAAGARVVSCVGGMDPRRESRALAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ S L+AVVLDEADEMLDLGFR+D+EFIL ++P +RR L
Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRLRAVVLDEADEMLDLGFREDLEFILGATPVERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA++YQ++A R+ +A E R H+DI+YRAV +   + +  +VN LR   
Sbjct: 183 LFSATLPKGIVALAEHYQREARRIAVAGERRGHADIEYRAVRILPRETELVVVNTLRLVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AIVFC+TR +V     VL E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFAAVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHAEL  + E L HRSGRTGRAGRKG+SV ++P + +R+AE L  +A
Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGRKGISVLLVPGSRRRKAEELMAQA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  VW   P  + IR  D +R+L DPL  +    +++ M   LLA+   E +AA  +R 
Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLVDPLLTEETSEEDRAMAQALLAQRSAEDLAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L APEE+T     SGR              G R     S WF L+VG +  A+ R 
Sbjct: 423 YRARLPAPEEVTDPGFASGRPTAARRE-------GPRPALGPSVWFRLNVGRRDNADPRR 475

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGG- 538
           L+PMLCR  GI R+ +GAIR+    T  E+    +A+  D   R+   D  ++++ L G 
Sbjct: 476 LLPMLCRRGGITREEVGAIRIFDRETKFEIRGGAAANFADSFGRSGSAD--LRVEPLDGT 533

Query: 539 -EKPDFRGYKSS 549
            E P     +  
Sbjct: 534 PELPRRPARRRG 545


>gi|123440819|ref|YP_001004810.1| ATP-dependent RNA helicase DeaD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087780|emb|CAL10566.1| cold-shock dead-box protein A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 657

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 170/582 (29%), Positives = 274/582 (47%), Gaps = 42/582 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELA+QV   L         V  V   GG     + 
Sbjct: 67  HNIDPS------LKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + K+   V I S      DI     +V    +++A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + +  +R  + 
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +  M   LLAK  PE+   
Sbjct: 361 IERTMKMTIPPVQLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEEEFD 418

Query: 416 ---IAAGFLRIHRA-----------GLCAPEEITPVSLVSGRDRFRDDSRA--------- 452
              +AA  L++ +                 E  T     S R R R+DSR          
Sbjct: 419 IETLAAALLKMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDG 478

Query: 453 -FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +     R +      + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 479 GERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 538

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS 549
           E+      + +    RT  L+K + ++ LG  +P  R  + +
Sbjct: 539 ELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPA 580


>gi|86747306|ref|YP_483802.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86570334|gb|ABD04891.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 679

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 289/591 (48%), Positives = 376/591 (63%), Gaps = 26/591 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     +P  +  AL+ER Y   T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A 
Sbjct: 1   MPFSTTLPP-LARALAERHYSEATPVQSAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIAP 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL E +RF PA+APLAL +APTRELA+QV REL WLY  TG  V  C+GG+   RE+R+
Sbjct: 60  DLLGEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGATGARVVSCVGGMDPRREQRE 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  R
Sbjct: 120 LAEGAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPDSR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+   I  LAK YQ +A RV +A     H+DI+YRA+ +A +D ++A+VN LR
Sbjct: 180 RTLLFSATLPRGIIALAKTYQHNAFRVEVAGREGGHADIEYRAIRIAPNDVEHAVVNTLR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y  +  AIVFC+TR+ V+     L E  F VVALSGEL+Q ER+NAL  +RDGRARVC+A
Sbjct: 240 YVESPTAIVFCATRSGVTHLQTALLERGFSVVALSGELTQNERTNALNALRDGRARVCVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L 
Sbjct: 300 TDVAARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGISVLLVPPARRRRAESLL 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +  +W  AP  + IR  D QR++QD LF +    D++ +   LLA+   E+IA   
Sbjct: 360 GLAGIEAIWGTAPQADEIRVLDQQRMMQDALFTEETTPDDQALAQALLAERSAEEIAVAL 419

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGGGSR 460
            R++RA L APE+I        R R                        SRA     G +
Sbjct: 420 ARLYRARLPAPEDILDPGERPARGRDDRAPAKGARAPREERDYGPRDPGSRARPGKAGQK 479

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E++A     
Sbjct: 480 HAITDGVWFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAAAAVD 539

Query: 521 LRRTVK---LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKR 566
               +K    D  I+++ L G KP   G + +  K    Q  +  T+R KR
Sbjct: 540 FAAQIKRPDKDDNIRIEPLIGAKPIEAGAERALSKPHGGQLSERETRRSKR 590


>gi|320202076|gb|EFW76651.1| Cold-shock DEAD-box protein A [Escherichia coli EC4100B]
          Length = 629

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 166/617 (26%), Positives = 271/617 (43%), Gaps = 58/617 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKP----------------------DFRGYKSSGF 551
             + +    RT  L+K + ++ LG  +P                      +F G +  G 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGS 597

Query: 552 KSKNSQDGATKRFKRFK 568
           +    +    +R  R  
Sbjct: 598 RGDGRRFSGERREGRAP 614


>gi|170717335|ref|YP_001784445.1| DEAD/DEAH box helicase domain-containing protein [Haemophilus
           somnus 2336]
 gi|168825464|gb|ACA30835.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 601

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 163/587 (27%), Positives = 276/587 (47%), Gaps = 22/587 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I  A+SE G+   + +Q+A +   L   DVL  AQTGSGKT AF L L +
Sbjct: 7   TFNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E     + GV +    GG     + R
Sbjct: 67  KIDTNE------KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   L++S+L+++VLDEADEML +GF DD+E ++   P++
Sbjct: 121 ALKQGAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQ 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  +   V I S  R   DI      V    ++ A++  L
Sbjct: 181 HQTALFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+ +    T++L +H F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 241 EVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360

Query: 360 FREANVSVVWEPAP---SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R    ++     P   +++  R ++    +   L    ++     + D+  A  D E I
Sbjct: 361 ERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITPV------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           AA  L + +          PV               R      +         +    + 
Sbjct: 421 AAAMLMLLQGKQKLILPEDPVFEKHSRRNDRRERGERRGKENPRSERHGYGIPQPMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG     E R ++  +     I  + IG I++    + +E+      + + +  +T  
Sbjct: 481 IEVGRCDGVEVRHIVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTRV 540

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           L+K +++ ++     +      SG K K   +   +  ++F   S  
Sbjct: 541 LNKQMRMSFVSAVNSEEEFEAGSGGKRKGRYEREFRGGRKFNEKSNR 587


>gi|227357070|ref|ZP_03841440.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
 gi|227162762|gb|EEI47725.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis ATCC 29906]
          Length = 611

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 167/589 (28%), Positives = 271/589 (46%), Gaps = 28/589 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L  
Sbjct: 8   TFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLH 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           AP  L +APTRELAVQV   +E        V  V   GG     + R
Sbjct: 68  NLD------ESLKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL DH+    L++S LK +VLDEADEML +GF +D+E IL   P +
Sbjct: 122 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  AI  + + +  D   V I S      DI     +   + ++ A++  L
Sbjct: 182 HQTALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + I
Sbjct: 242 EAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILI 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 302 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLF------LDSIQGDEKKMVDVLLAKHDP 413
            R   +S+     P+ E I +R  ++  Q          LD  +    K+        D 
Sbjct: 362 ERTMKMSIPEVELPNAELISQRRQEKFAQQIAQQLETSNLDQYRALLPKLAPQGEEALDM 421

Query: 414 EKIAAGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           E +AA  L++ +    L  P +          DR    +   +     R +      + +
Sbjct: 422 ETLAAVLLKMAQGERALILPPDPVRRPRREFNDRDDRRNDRERSPRRERRDAGEMDLYRI 481

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKL 527
            VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  +
Sbjct: 482 EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLYGSHSTIELPKGMPGDLLSHFTRTRIM 541

Query: 528 DKGIQLKYLGGEKP-------DFRGYKSSGFKSKNSQDGATKRFKRFKG 569
           +K + ++ +G  +P         R  +  G +  +  D   +R    +G
Sbjct: 542 NKPLNMQLVGDAQPYRERRNSSRRDGQPQGGRRFSKGDQPPRRGNGERG 590


>gi|306844397|ref|ZP_07476987.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275210|gb|EFM56960.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 626

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 382/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F+  ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFIQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|300938072|ref|ZP_07152850.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
 gi|300456932|gb|EFK20425.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 21-1]
          Length = 646

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 167/617 (27%), Positives = 272/617 (44%), Gaps = 58/617 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKP----------------------DFRGYKSSGF 551
             + +    RT  L+K + ++ LG  +P                      +F G +  G 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGG 614

Query: 552 KSKNSQDGATKRFKRFK 568
           +S   +    +R  R  
Sbjct: 615 RSDGRRFSGERREGRAP 631


>gi|260582883|ref|ZP_05850668.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|260094096|gb|EEW77999.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 613

 Score =  336 bits (861), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 173/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFAKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +  S +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERSND 586


>gi|304557826|gb|ADM40490.1| Cold-shock DEAD-box protein A [Edwardsiella tarda FL6-60]
          Length = 621

 Score =  336 bits (861), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 165/598 (27%), Positives = 272/598 (45%), Gaps = 33/598 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRER 118
           + +           AP  L +APTRELAVQV     ++     G+ V    GG     + 
Sbjct: 66  NNIDPS------LKAPQVLVLAPTRELAVQVAEAMADFSKHMHGINVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLSLTSLRGLVLDEADEMLRMGFIEDVETIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 180 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R   +++     P+ E +  R   +    +Q  L    +      +  +    + D E
Sbjct: 360 IERTMKLTIPEVELPNAELLSTRRLAKFAARVQQQLESSDLDQYRALLAKLQPEDEQDME 419

Query: 415 KIAAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +AA  L++ +          P V     R+    D R        R        + + V
Sbjct: 420 TLAAALLKMAQGERPLILPPDPVVERRPRREFRERDERGGDRPRRERREVGDMELYRIEV 479

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529
           G     E R ++  +     I+ + IG IR+    + +E+      D +    RT  L+K
Sbjct: 480 GRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKGMPGDLLTHFTRTRILNK 539

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQD---------------GATKRFKRFKGASK 572
            + ++ +G      +  + SG +    +                G  +RF   +   +
Sbjct: 540 PMNMQLIGDAPAREQRRERSGERGGERRSFGGRDGGRDGDRRSFGGQRRFSDDRRGDR 597


>gi|113460849|ref|YP_718916.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
 gi|112822892|gb|ABI24981.1| ATP-dependent RNA helicase CsdA [Haemophilus somnus 129PT]
          Length = 601

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 163/587 (27%), Positives = 276/587 (47%), Gaps = 22/587 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I  A+SE G+   + +Q+A +   L   DVL  AQTGSGKT AF L L +
Sbjct: 7   TFNDLGLPEFILNAVSEMGFSTPSPIQQACIPHLLNGHDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E     + GV +    GG     + R
Sbjct: 67  KIDTNE------KYPQMLVMAPTRELAIQVADACEQFVKFSKGVRIVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   L++S+L+++VLDEADEML +GF DD+E ++   P++
Sbjct: 121 ALKQGAQVVVGTPGRILDHIRRGTLDLSNLQSIVLDEADEMLRMGFIDDVETVMAELPEQ 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  +   V I S  R   DI      V    ++ A++  L
Sbjct: 181 HQTALFSATMPAPIKRITKRFMHNPQEVKIQSTQRTAPDITQSCWYVRGFRKNEALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+ +    T++L +H F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 241 EVEDFDAAIIFTRTKTATLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRAGRAILFVEPKERRLLGNI 360

Query: 360 FREANVSVVWEPAP---SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R    ++     P   +++  R ++    +   L    ++     + D+  A  D E I
Sbjct: 361 ERLMKKAIEEVEMPNHLALQECRRKNFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITPV------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           AA  L + +          PV               R      +         +    + 
Sbjct: 421 AAAMLMLLQGKQKLILPEDPVFEKHSRRNDRRERGERRGKENPRSERHGYGTPQPMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG     E R ++  +     I  + IG I++    + +E+      + + +  +T  
Sbjct: 481 IEVGRCDGVEVRHVVGAIANEGDIQSRYIGHIKLYDTYSTIELPQGMPKELLQVFAKTRV 540

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           L+K +++ ++     +      SG K K   +   +  ++F   S  
Sbjct: 541 LNKQMRMSFVSAVNSEEEFEAGSGGKRKGRYEREFRGGRKFNEKSNR 587


>gi|84684523|ref|ZP_01012424.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84667502|gb|EAQ13971.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Rhodobacterales bacterium HTCC2654]
          Length = 719

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 282/579 (48%), Positives = 390/579 (67%), Gaps = 25/579 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ ++I EAL+ERGY  LT VQEA+ +PDL  +D+LVSAQTGSGKTV FGLA+A TLL E
Sbjct: 20  NMTRLINEALAERGYDTLTPVQEAVSDPDLAGRDLLVSAQTGSGKTVGFGLAIAPTLLGE 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++ F PA  PLAL +APTRELA+QV REL WL+ KTG  +A C+GG+ +  ERR L+ GA
Sbjct: 80  DEEFGPAGLPLALVVAPTRELAMQVKRELIWLFGKTGARLASCVGGMDMRDERRALERGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI+   L++S L+A+VLDEADEMLDLGFR+D+EF+L+ +P++RR+L+F
Sbjct: 140 HIVVGTPGRLRDHIQRGSLDMSELRAIVLDEADEMLDLGFREDLEFMLEEAPEERRILLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA+ YQ DA RVN  +   QH+DI Y+A+ VA +D +NAI N+LR+H ++
Sbjct: 200 SATVPPTIAKLAEQYQNDAARVNTITGATQHADIAYQAIRVAQTDTENAIFNLLRFHDSE 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVF +TRA V+  T  L+     VV+LSGELSQ ER++ALQ MRDGRA+VC+ATDVAA
Sbjct: 260 NAIVFANTRAQVAHLTARLSNRGLNVVSLSGELSQNERTHALQAMRDGRAQVCVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGIDLP+L+LVIHA+L  N E+L HRSGRTGRAGRKG+S  ++P    ++ ERL   A  
Sbjct: 320 RGIDLPNLDLVIHADLPKNTESLTHRSGRTGRAGRKGISALIVPPRDVKKTERLLGWAKT 379

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           +  W  APS + I  +D +R+L DP++ + +   +    + +LA++  E +AA +LR+ +
Sbjct: 380 TAEWTTAPSADDIHAKDEERLLADPVWTEPVTEAQAAFAEKVLAQYGAEAVAAAYLRLFQ 439

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           +   APE++ P      R   +               F  S WF+LSVG  +KAEARWL+
Sbjct: 440 SRQGAPEDLLPPDTKPERKERK--------------PFGPSKWFALSVGQAEKAEARWLL 485

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGG--- 538
           P++ R+SG+++  IGAIRVQ   T++E++    D    ++    +LD+GI+++ L     
Sbjct: 486 PLIMRASGVDKADIGAIRVQGAETYLELTEKSADGFLSSLGADGELDEGIKVRALDAAPE 545

Query: 539 ----EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                KP+ R  K  G   K   +   +     K  S +
Sbjct: 546 LGPRPKPERRDGKPGGRDGKPPFNKGPRDRGERKERSDD 584


>gi|308189119|ref|YP_003933250.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
 gi|308059629|gb|ADO11801.1| Cold-shock DEAD box protein A [Pantoea vagans C9-1]
          Length = 640

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 172/604 (28%), Positives = 272/604 (45%), Gaps = 46/604 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  NNIDPT------VKAPQILVLAPTRELAVQVAEAITEFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L +S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLELSNLRGLVLDEADEMLRMGFIEDVETIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGR-KTDALVRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +      LL K  PE    
Sbjct: 359 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLDQYRALLTKMQPEDELD 416

Query: 416 ---IAAGFLRI---HRAGLCAPEEITP------------------VSLVSGRDRFRDDSR 451
              +AA  L++    R  +  PE   P                   +      R   DSR
Sbjct: 417 LETLAAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARSDRGPRESRDSR 476

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                   R +      + + VG     E R ++  +     I+ + IG I++  + + +
Sbjct: 477 DGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTI 536

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDF-RGYKSSGFKS--KNSQDGATKRF 564
           E+      D +    RT  L+K + ++ LG  +P+  RG +        + S  GA  R 
Sbjct: 537 ELPKGMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGAGGERRSGPGAANRE 596

Query: 565 KRFK 568
              +
Sbjct: 597 GGRR 600


>gi|254718344|ref|ZP_05180155.1| DEAD-box ATP dependent DNA helicase [Brucella sp. 83/13]
 gi|265983304|ref|ZP_06096039.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306839567|ref|ZP_07472373.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306842588|ref|ZP_07475237.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|264661896|gb|EEZ32157.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|306287233|gb|EFM58721.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306405353|gb|EFM61626.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 626

 Score =  336 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 272/600 (45%), Positives = 380/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+ +VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRVIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 627

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 171/618 (27%), Positives = 274/618 (44%), Gaps = 60/618 (9%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L
Sbjct: 5   VTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            + L  E        AP  L +APTRELAVQV             V  V   GG     +
Sbjct: 65  LNNLKPE------LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P
Sbjct: 119 LRALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +  +FSAT+  AI  + + + KD   V I S      DI      V    +++A+V 
Sbjct: 179 AEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNDALVR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R   
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------H 411
            + R   +++     P+ E + +R   +          ++  +  M   LLAK       
Sbjct: 359 NVERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLAKLQPQEEL 416

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR-------------------- 451
           D E +AA  L++ +     P  + P  +   R  FRD                       
Sbjct: 417 DVETLAAALLKMAQG--ERPLILPPDPVFRPRREFRDRDESRSDSRGDRRRDPRDSRDSR 474

Query: 452 -AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
              +     R +      + + VG     E R ++  +     I+ + IG I++    + 
Sbjct: 475 DGDRPQRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 534

Query: 511 VEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKP----------------DFRGYKSSG 550
           +E+      D +    RT  L+K + ++ +G                         +S G
Sbjct: 535 IELPKGMPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRRSFG 594

Query: 551 FKSKNSQDGATKRFKRFK 568
              +   +   +R + F 
Sbjct: 595 GGERREGNSGERRERSFN 612


>gi|197287236|ref|YP_002153108.1| ATP-dependent RNA helicase DeaD [Proteus mirabilis HI4320]
 gi|194684723|emb|CAR46715.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase) [Proteus
           mirabilis HI4320]
          Length = 616

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 167/589 (28%), Positives = 271/589 (46%), Gaps = 28/589 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  AL++ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L  
Sbjct: 13  TFADLGLSAPILTALNDLGYEKPSPIQQQCIPFLLDGNDVLGMAQTGSGKTAAFSLPLLH 72

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           AP  L +APTRELAVQV   +E        V  V   GG     + R
Sbjct: 73  NLD------ESLKAPQILVLAPTRELAVQVAEAIEDFSKHLPKVNVVALYGGQRYDVQLR 126

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL DH+    L++S LK +VLDEADEML +GF +D+E IL   P +
Sbjct: 127 ALRQGPQVVVGTPGRLLDHLNRGTLDLSKLKGLVLDEADEMLRMGFIEDVENILSKIPAE 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  AI  + + +  D   V I S      DI     +   + ++ A++  L
Sbjct: 187 HQTALFSATMPEAIRRITRRFMNDPKEVRIQSSVTTRPDISQSYWMTYGARKNEALIRFL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + I
Sbjct: 247 EAEDFDAAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQSLREQTLERLKNGRLDILI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 307 ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNI 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLF------LDSIQGDEKKMVDVLLAKHDP 413
            R   +S+     P+ E I +R  ++  Q          LD  +    K+        D 
Sbjct: 367 ERTMKMSIPEVELPNAELISQRRQEKFAQQIAQQLETSNLDQYRALLPKLAPQGEEALDM 426

Query: 414 EKIAAGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           E +AA  L++ +    L  P +          DR    +   +     R +      + +
Sbjct: 427 ETLAAVLLKMAQGERALILPPDPVRRPRREFNDRDDRRNDRERSPRRERRDAGEMDLYRI 486

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKL 527
            VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  +
Sbjct: 487 EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLYGSHSTIELPKGMPGDLLSHFTRTRIM 546

Query: 528 DKGIQLKYLGGEKP-------DFRGYKSSGFKSKNSQDGATKRFKRFKG 569
           +K + ++ +G  +P         R  +  G +  +  D   +R    +G
Sbjct: 547 NKPLNMQLVGDAQPYRERRNSSRRDGQPQGGRRFSKGDQPPRRGNGERG 595


>gi|145628549|ref|ZP_01784349.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145639856|ref|ZP_01795457.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
 gi|144979019|gb|EDJ88705.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|145271074|gb|EDK10990.1| preprotein translocase subunit SecF [Haemophilus influenzae PittII]
          Length = 613

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 273/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYGNPRPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D        F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-GDDFNGKRKGRGGDFRGERGRERGND 586


>gi|90422395|ref|YP_530765.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90104409|gb|ABD86446.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 659

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 279/595 (46%), Positives = 376/595 (63%), Gaps = 24/595 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F      +  AL+ER Y + T VQ A+L      +D+LVSAQTGSGKTVA+GLA+A  L
Sbjct: 2   TFLTTSPPLARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKTVAYGLAIAKNL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + +RF  A+APLAL +APTRELA+QV REL WLYA     V  C+GG+   +E+R+L 
Sbjct: 62  LGDAERFEQAAAPLALIVAPTRELALQVHRELAWLYAYADARVVSCVGGMDPRQEQRELA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  RR 
Sbjct: 122 RGAHIVVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPPTRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQ+ A RV +A+    H+DI+Y+A+ +A  D ++A+VN+LR+H
Sbjct: 182 LLFSATLPRGIVALAKQYQQQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            + + IVFC+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATD
Sbjct: 242 ESPSTIVFCNTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHA+L ++ E + HRSGRTGRAG+KG+SV ++P   +RRAE L   
Sbjct: 302 VAARGIDLPNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +  VW  APS + IR+ D +R+ QD LF +    ++  +   LLA+  PE IAA   R
Sbjct: 362 AGIDAVWGTAPSADEIRKLDQERMFQDALFAEEPSAEDLVLAQALLAERSPEYIAAALAR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRF-----RDDSRAFKVGGG-----------SRDNFKGS 466
           ++RA L +PE+I        R R      R DSR                  +R   +G 
Sbjct: 422 LYRARLPSPEDILDPGERGARSREPRATTRGDSRPRAEDRDYSPKARPGKASTRHAMEGG 481

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF  ++G K+ AEARWL+PM+CR  GI++Q IGAIR+    T  E+S    +     ++
Sbjct: 482 VWFRAAIGRKKNAEARWLLPMICRRGGIDKQDIGAIRIHDTTTEFEISGAAAESFAAMIR 541

Query: 527 ---LDKGIQLKYLGG-----EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               +  I+++ +G      + PD R      ++ K S D +  R     GA ++
Sbjct: 542 RPDKEDNIRIEAMGDAPAAQQAPDRRPPAGKPYERKPSSDKSYDRNHAGDGAPRD 596


>gi|326408143|gb|ADZ65208.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis M28]
          Length = 626

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|254700936|ref|ZP_05162764.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 5 str. 513]
 gi|261751452|ref|ZP_05995161.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261741205|gb|EEY29131.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 626

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVYPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 644

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 167/591 (28%), Positives = 270/591 (45%), Gaps = 39/591 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE 
Sbjct: 19  LSAPILSALEDLGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNINAE- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV             V  V   GG     + R L+ G 
Sbjct: 78  -----LKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYDVQLRALRQGP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 133 QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + +  D   V I +      DI      V    ++ A+V  L      
Sbjct: 193 SATMPEAIRRITRRFMNDPQEVRIQASVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 253 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 313 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
           ++     P+ E + +R  +R   +    L+S   D+ + +   L      D E +AA  L
Sbjct: 373 TIPEVELPNAELLSQRRLERFAANVQQQLESSDLDQYRTLLSKLQPAEDLDIETLAAALL 432

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF---------KGSSWFSLS 472
           ++ +          PV         RDD R          +               + + 
Sbjct: 433 KMAQGERPLILPPDPVRRPRREFNERDDRRRNGFDDRGERSDRPRRERRDVGEMELYRIE 492

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLD 528
           VG     E R ++  +     I+ + IG I++    + +E+      D +    RT  L+
Sbjct: 493 VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGDLLSHFTRTRILN 552

Query: 529 KGIQLKYLGGEKP---------------DFRGYKSSGFKSKNSQDGATKRF 564
           K + ++ +G  +P               +     S   + + + +G  +RF
Sbjct: 553 KPMNMQLMGDAQPFERRERRGGGRNGNGNGNSSGSGPRRDRENFNGGGRRF 603


>gi|325577637|ref|ZP_08147912.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160382|gb|EGC72508.1| ATP-dependent RNA helicase DeaD [Haemophilus parainfluenzae ATCC
           33392]
          Length = 612

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 169/591 (28%), Positives = 276/591 (46%), Gaps = 26/591 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +         A  P  L +APTRELA+QV    E       G+ +    GG     + R
Sbjct: 66  KIDPA------AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHI    LN+S LKA+VLDEADEML +GF DD+E ++   P++
Sbjct: 120 ALKQGAQVVVGTPGRILDHIHRNTLNLSELKAIVLDEADEMLRMGFIDDVETVMAELPEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  +   V I   N    DI+     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEEFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++A R +  Q  +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +         +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  + + VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDEYSTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRG---YKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ ++G  + D R          +     D    RF+  +   + 
Sbjct: 540 VLNKQMQMSFMGAAQSDNRRSGNDFGGKGRRNERGDRGQDRFRGQRNGERR 590


>gi|319775896|ref|YP_004138384.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450487|emb|CBY86704.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 613

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 173/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNNLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+    + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E ++E   ++    +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKCKGRGGDFRGERGRERGND 586


>gi|254690433|ref|ZP_05153687.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 6
           str. 870]
 gi|256258685|ref|ZP_05464221.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus bv. 9
           str. C68]
 gi|260755981|ref|ZP_05868329.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260885002|ref|ZP_05896616.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297247521|ref|ZP_06931239.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
 gi|260676089|gb|EEX62910.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260874530|gb|EEX81599.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297174690|gb|EFH34037.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 5 str. B3196]
          Length = 626

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|17988107|ref|NP_540741.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|256045915|ref|ZP_05448789.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260563201|ref|ZP_05833687.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265992328|ref|ZP_06104885.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17983860|gb|AAL53005.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|260153217|gb|EEW88309.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263003394|gb|EEZ15687.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 626

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|148559538|ref|YP_001258161.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|256368588|ref|YP_003106094.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|148370795|gb|ABQ60774.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|255998746|gb|ACU47145.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 626

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|288556913|ref|YP_003428848.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288548073|gb|ADC51956.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 169/576 (29%), Positives = 280/576 (48%), Gaps = 43/576 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  I + I  A+ + G+   + +QE  +   L   DV+  AQTG+GKT AFG+ +
Sbjct: 1   MTYFSDFQISEPIKRAIKDMGFEEPSPIQEKAIPVILEGGDVIGQAQTGTGKTAAFGIPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D+ +      AL + PTRELA+QV  EL+ L A   +      GG S+  + 
Sbjct: 61  I-------DKVTEERYVQALILTPTRELAIQVSGELQKLSAHKRIRTMPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +V+GTPGR+ DHIR K L ++ +  +VLDEADEMLD+GF DDIE IL     
Sbjct: 114 KALKQGVQVVIGTPGRILDHIRRKTLQLNKVHTIVLDEADEMLDMGFVDDIESILREVKG 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ PAI  L++ Y      V I         ID     V   ++ +++  I
Sbjct: 174 ARQTLLFSATMPPAIKKLSRRYMTTPKTVTINKGEVTAPSIDQLYYKVLERNKIDSLCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      
Sbjct: 234 IDSEEVDLGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDAVMKKFRDSSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ ++     +    
Sbjct: 294 IATDVAARGIDVDNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGD-EKKMVDVLLAKHDPE 414
           + +E  +++  +  P++E + E+     ++++ D +     + +  K +V  +LA H PE
Sbjct: 354 IEQEIKMAIPSQDVPTIEDVVEKQQSSWKKLVHDTIDTGGKEFELFKPLVQEVLADHSPE 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            + A  L+++ +   A EE                        G     KG   F ++VG
Sbjct: 414 DVVAALLKMNFSNDSAAEE-------------------AGYNFGETGGAKGMVRFFINVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
                  + L+  +    GI  ++IG I +  + TFVEV  D    +   ++  +     
Sbjct: 455 RNVNMSPKILIEEISELVGIPGKAIGRIDIFENFTFVEVPEDVAPFVYEALRYSR----- 509

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
            + G + +         K +  +D  T R  + + +
Sbjct: 510 -INGARVNL-----EPAKPRPKRDNRTPRPTKARSS 539


>gi|89070055|ref|ZP_01157386.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
 gi|89044392|gb|EAR50530.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicola granulosus HTCC2516]
          Length = 680

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 303/571 (53%), Positives = 393/571 (68%), Gaps = 21/571 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EALSERGY  LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLLA  
Sbjct: 1   MHHTLSEALSERGYETLTAVQEAVTDPALEQADLLVSAQTGSGKTVGFGLAIAPTLLAGE 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R  PA+APLAL +APTRELA QV RELEWLYA+TG  V  C+GG+ +  ERR L+ GAH
Sbjct: 61  ERMGPAAAPLALIVAPTRELAFQVRRELEWLYARTGAQVTSCVGGMDMRSERRALERGAH 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI+   L +  ++AVVLDEADEMLDLGFR+D+EF+L ++P+ RR LMFS
Sbjct: 121 IVVGTPGRLRDHIQRGSLELESIRAVVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFS 180

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I TLAK+YQ+DAVRV+  S  +QH+DI Y+AV VA  D +NAI+NILR+H A+N
Sbjct: 181 ATVPPMIATLAKHYQRDAVRVSTQSTGKQHADIAYQAVKVAQQDAENAIINILRFHDAEN 240

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +TRA V+R T   +   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAAR
Sbjct: 241 AIVFANTRAMVARLTARFSNRGFAVVSLSGELSQNERTHALQAMRDGRARVCVATDVAAR 300

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDLP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  V+P  M +RAERL + A +S
Sbjct: 301 GIDLPNLDLVVHAELPTNVEGLLHRSGRTGRAGRKGISALVVPPKMVKRAERLLKWAKIS 360

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
             W  APS E I  RD +R+L DP++ + I  ++ +    L A H PE+IAA +LR++R 
Sbjct: 361 AEWITAPSAEDILARDEERLLADPVWSEEIAAEDAEFAARLAAAHAPERIAAAYLRLYRE 420

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
              APEE++P                 K     R  F  S W +LSVG +Q+AE RWL+P
Sbjct: 421 RHSAPEELSPPD--------------AKPPAKERKPFGPSRWIALSVGREQRAEPRWLLP 466

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL----RRTVKLDKGIQLKYLGGEKPD 542
           +LCR+ G+++ +IGAIRV  D ++VE+S   V           +L+ GI+ + L G  PD
Sbjct: 467 LLCRAGGLDKSAIGAIRVVKDESYVELSEPAVAGFFAEIGEAGQLEDGIRARLLEGV-PD 525

Query: 543 F--RGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +  R   S+    K  +    +  +  +   
Sbjct: 526 YSARPQPSAPRPPKPERKAEPRPERAERPER 556


>gi|91977685|ref|YP_570344.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684141|gb|ABE40443.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 691

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 280/584 (47%), Positives = 373/584 (63%), Gaps = 25/584 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  +  AL+ER Y+  T VQ A+L P+   +D+LVSAQTGSGKTVA+GLA+A  LL +++
Sbjct: 7   PPPLARALAERNYLEATPVQSAVLAPEAAGRDLLVSAQTGSGKTVAYGLAIARDLLGDSE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           RFS A+APLAL +APTRELA+QV REL W+Y   G  V  C+GG+   RE+R+L  GAHI
Sbjct: 67  RFSSAAAPLALIVAPTRELALQVHRELGWVYGYAGARVVSCVGGMDPRREQRELAEGAHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P  RR L+FSA
Sbjct: 127 VVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPATRRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  LAK YQ DA R+ +      H+DI+YRA+ +A SD ++A+VN LR+  + +A
Sbjct: 187 TLPRGIIALAKTYQHDAFRIEVEGREGGHADIEYRAMRIAPSDVEHAVVNTLRFVESPSA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC+TR +V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDVAARG
Sbjct: 247 IVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTQALNSLRDGRARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           IDLP+L LVIHA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L   A +  
Sbjct: 307 IDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAELLLNLAGIEA 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           +W  AP  + IR  D QR+ QD LF D I  +++ +  VLLA+   E+IA    R++RA 
Sbjct: 367 IWGTAPQADEIRVLDQQRMTQDTLFTDEISPEDQALAQVLLAERTAEEIAIALARLYRAR 426

Query: 428 LCAPEEITPVSLVSGRDRFRD--------------------DSRAFKVGGGSRDNFKGSS 467
           L +PE+I      + R R                         RA     G +       
Sbjct: 427 LPSPEDILDPGQANARGRDDRASPKGARAPREERDYGPRDSGPRARSAKAGQKHAMTDGV 486

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK- 526
           WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E++A   +     +K 
Sbjct: 487 WFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAFAAEDFAAQIKR 546

Query: 527 --LDKGIQLKYLGGEKPDFRGYKSSGFKSK--NSQDGATKRFKR 566
              D  I+++ L G KP         +K       +  T+R KR
Sbjct: 547 PDKDDNIRIEPLIGAKPIEPAADKPAYKPHDGKKSERETRRSKR 590


>gi|256112630|ref|ZP_05453551.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994071|ref|ZP_06106628.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765052|gb|EEZ10973.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 626

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -SERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|58039896|ref|YP_191860.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58002310|gb|AAW61204.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 603

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 252/553 (45%), Positives = 365/553 (66%), Gaps = 10/553 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F +    +  AL  RGY  LT VQEA+L P L E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPDTHPALKRALEARGYEQLTPVQEAVLQPGLDERDLLVSAQTGSGKTVAFGLAIAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + DR  P+  P+AL IAPTRELA+QV  EL+WLYA+TG  +A CIGG     E R+L  
Sbjct: 63  GDADRLPPSPQPMALVIAPTRELALQVQSELKWLYAETGARIASCIGGTDARSEARELNR 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L++S L+ VVLDEADEMLD+GFR+++E +LD++P +RR L
Sbjct: 123 GAHIVVGTPGRLCDHLSRGSLDLSALRCVVLDEADEMLDMGFREELEQLLDAAPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I +LA+ YQK+A R++  S  +QHSDI YR V+    + + ++VN+LR++ 
Sbjct: 183 LFSATIAREIASLARRYQKNAERIDTVSGAKQHSDITYRCVITQPQEIERSLVNVLRFYE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  A+VFC+TR  V++    L E  F  VA+SGE+ Q ERS A++ +R G+ARVC+ATDV
Sbjct: 243 SPTAMVFCNTRMMVNQVQAALLERGFASVAISGEMGQNERSRAIESLRSGQARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LVIHA + +  E LLHRSGRTGRAGRKG SV ++P N +RRAERL + A
Sbjct: 303 AARGIDVPALSLVIHASIPTAAETLLHRSGRTGRAGRKGTSVLMVPLNQRRRAERLLQMA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   WE  P+ +AI E+D  R++ DP+  +++     ++V+ L+ K+D  K+AA  + +
Sbjct: 363 KIQAEWEAVPTADAIAEQDKTRLMHDPILTNAVDDMSDELVNQLVEKYDATKLAAALVGL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L   E+I P+S+ + R   R +           ++     WF + VG  ++A+ +W
Sbjct: 423 YRARLPKVEQIRPMSVEAPRRTERGER------APREEHTMSGEWFKMGVGRTERADPKW 476

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           L+P++CR  G+ ++ IG+IR+  + T+ +++ + V   +  +   +  ++     E P  
Sbjct: 477 LIPLICRLGGVQKREIGSIRIDQEQTYFQIADESVARFKSCLAGAEADEVTIEPSEAPAG 536

Query: 544 RGYKSSGFKSKNS 556
                 G + +N 
Sbjct: 537 ----GMGPRGRNP 545


>gi|301168896|emb|CBW28490.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 613

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 171/588 (29%), Positives = 272/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACEQFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVIVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++  R +     +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYGNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKRKGRGGDFRGERGRERGND 586


>gi|254438889|ref|ZP_05052383.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
 gi|198254335|gb|EDY78649.1| DbpA RNA binding domain family [Octadecabacter antarcticus 307]
          Length = 702

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 283/572 (49%), Positives = 372/572 (65%), Gaps = 23/572 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +A+  RGY  LT VQEA  +P L  +D+LVSAQTGSGKT+ FG+A+A +LL + +R
Sbjct: 3   QALADAIKARGYDTLTPVQEACSDPALEGRDLLVSAQTGSGKTLGFGIAIAQSLLGDAER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV RELEWLY KTG V+A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K +++S LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ LMFSAT
Sbjct: 123 VSTPGRLRDHIMRKSIDLSSLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  +I  LA+ YQ+DA RV   +  +QH+DI+YRA  V+  D +NAI+N+LRY  A NAI
Sbjct: 183 VPASIAKLAQRYQRDAERVATTTGEKQHADIEYRAFCVSARDTENAIINVLRYFEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQSERTHALQSMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S  ++P  ++++AERL   A ++  
Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  +D +R+L+D  +   +    + MV  +  +  PE++AA +LR++R   
Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVDESAQAMVATMAERFAPEQLAAAYLRLYREKH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+  V   +                  R  F  S WFSL  G    AE R ++PM+
Sbjct: 423 TAPEELADVGEPA----------------KPRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFR 544
           C+   I +  IGAIR+QPD++++EV    V  L       + L+ G  L  +       R
Sbjct: 467 CKMGNITKDDIGAIRIQPDMSYIEVREASVKTLTAALGTDMTLENGAPLTRIANPPSFER 526

Query: 545 GYKSSGFKSK---NSQDGATKRFKRFKGASKN 573
           G      K +    +  G      + K A K+
Sbjct: 527 GPARKDAKPRYDGPNSGGKPDYKNKDKPAYKS 558


>gi|161618112|ref|YP_001591999.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260567233|ref|ZP_05837703.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|161334923|gb|ABX61228.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella canis ATCC
           23365]
 gi|260156751|gb|EEW91831.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 626

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 272/600 (45%), Positives = 380/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTP RL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|23501038|ref|NP_697165.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|254705304|ref|ZP_05167132.1| DEAD-box ATP dependent DNA helicase [Brucella suis bv. 3 str. 686]
 gi|261756015|ref|ZP_05999724.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|23346903|gb|AAN29080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|261745768|gb|EEY33694.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 626

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 272/600 (45%), Positives = 380/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTP RL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPRRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|62289105|ref|YP_220898.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699043|ref|YP_413617.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189023379|ref|YP_001934147.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237814596|ref|ZP_04593594.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|254696549|ref|ZP_05158377.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254731464|ref|ZP_05190042.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260546402|ref|ZP_05822142.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260759205|ref|ZP_05871553.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260760927|ref|ZP_05873270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62195237|gb|AAX73537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615144|emb|CAJ10077.1| Lipocalin-related protein and Bos/Can/Equ allergen:ATP-dependent
           helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-termin [Brucella melitensis biovar Abortus 2308]
 gi|189018951|gb|ACD71673.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237789433|gb|EEP63643.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella abortus str.
           2308 A]
 gi|260096509|gb|EEW80385.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260669523|gb|EEX56463.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260671359|gb|EEX58180.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 626

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 272/600 (45%), Positives = 380/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+Q  RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQARRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|225851664|ref|YP_002731897.1| DEAD-box ATP-dependent RNA helicase YdbR [Brucella melitensis ATCC
           23457]
 gi|256264826|ref|ZP_05467358.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640029|gb|ACN99942.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis ATCC
           23457]
 gi|263095281|gb|EEZ18908.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
          Length = 626

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKTD-KPRDFSR 598


>gi|254713301|ref|ZP_05175112.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M644/93/1]
 gi|254716345|ref|ZP_05178156.1| DEAD-box ATP dependent DNA helicase [Brucella ceti M13/05/1]
 gi|261218127|ref|ZP_05932408.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321026|ref|ZP_05960223.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923216|gb|EEX89784.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261293716|gb|EEX97212.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 626

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 273/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGECFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|220922880|ref|YP_002498182.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947487|gb|ACL57879.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 545

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 264/551 (47%), Positives = 344/551 (62%), Gaps = 12/551 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL  RGY + T VQ A+L P +  +D+LVSAQTGSGKTVA+GLA+A TLL
Sbjct: 3   FPPVPAPLARALDARGYADPTPVQAAVLEPAVAGRDLLVSAQTGSGKTVAYGLAMADTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +   P  APLAL IAPTRELA+QV REL WLY   G  VA C+GG+   RE R L  
Sbjct: 63  DGGETLPPPGAPLALVIAPTRELALQVHRELSWLYGAAGARVAACVGGMDPRRESRLLGE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ S ++A VLDEADEMLDLGFR+D+EFIL ++P +RR L
Sbjct: 123 GVHIVVGTPGRLRDHLERRNLDPSRMRATVLDEADEMLDLGFREDLEFILGATPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA++YQ++A+R+ +A E R H+DI+YRA+ +   + +  +VN LR   
Sbjct: 183 LFSATLPKGIVALAEHYQREALRIAVAGETRGHADIEYRALRILPRETELVVVNTLRLVE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AIVFC+TR +V     VL E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 ARTAIVFCNTRNAVRHLQAVLTERGFTAVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHAEL  + E L HRSGRTGRAG+KG+SV ++P + +R+AE L   A
Sbjct: 303 AARGIDLPGLGLVIHAELPHDAEVLQHRSGRTGRAGQKGISVLLVPPSRRRKAEELMARA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  VW   P  + IR  D +R+L DPL  D    +++ M   LLA+   E +AA  +R 
Sbjct: 363 GVVPVWSGPPPADEIRALDQERLLADPLLTDETSEEDRAMAQALLARCSAEDLAAALVRA 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L APEE+T     +GR       +              S WF L+VG +  A+ R 
Sbjct: 423 YRARLPAPEEVTDPGFPTGRPAPARRDKPR-------APLGPSVWFRLNVGRRDNADPRR 475

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT--VKLDKGIQLKYLGGEKP 541
           L+PMLCR  G+ R  +GAIR+    T  E+     +    +        +Q++ L    P
Sbjct: 476 LLPMLCRRGGVTRDEVGAIRIFERETKFEIRGGAAERFADSFGRTGSADLQIEML-DAVP 534

Query: 542 D--FRGYKSSG 550
           D   R  +  G
Sbjct: 535 DLPRRPSRRRG 545


>gi|8928554|sp|P33906|DEAD_KLEPN RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
          Length = 643

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 164/572 (28%), Positives = 266/572 (46%), Gaps = 40/572 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R  AL+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIHATAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR-----------------DRFRDDSRAFK 454
           D E +AA  L++ +        + PV+ +  R                 DR     R  +
Sbjct: 420 DVETLAAALLKMAQGERSL--IVPPVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDR 477

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 478 PKR-ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 536

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
                + +    RT  L+K + ++ LG  +P 
Sbjct: 537 KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPR 568


>gi|294676721|ref|YP_003577336.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
 gi|294475541|gb|ADE84929.1| ATP-dependent RNA helicase DbpA [Rhodobacter capsulatus SB 1003]
          Length = 670

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 294/574 (51%), Positives = 377/574 (65%), Gaps = 14/574 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F ++P  + EALS RGY  LT VQ+A+  P+L  +D+LVSAQTGSGKTVAFGLA+++
Sbjct: 1   MTDFPHLPAALAEALSARGYDALTPVQDAVTRPELAGRDLLVSAQTGSGKTVAFGLAISA 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL EN        P AL +APTRELAVQV REL WLY K G V+   +GG+    ERR 
Sbjct: 61  ELLGENGISPYPDLPRALVVAPTRELAVQVSRELSWLYEKAGAVITGAVGGMDARAERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGR+CDHIR   L++S L AVVLDEADEMLD+GFR+D+EFIL+S+P+ R
Sbjct: 121 LERGAHIVVGTPGRICDHIRRGALDLSALSAVVLDEADEMLDMGFREDLEFILESAPEGR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LA+ +Q++A R++  S    H+DIDYR VLV  SDR+NAIVN+LR
Sbjct: 181 RTLMFSATVPREIERLAQTFQREAERISTVSSRESHADIDYRGVLVDRSDRENAIVNLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H A+ AIVFCSTRA+V+  T  L    F VVALSGEL+Q ERS ALQMMRDGRARVCIA
Sbjct: 241 LHEAERAIVFCSTRAAVTHLTGKLLNRGFSVVALSGELTQDERSRALQMMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L  N E LLHRSGRTGRAGRKG+S  V+P N++ +AERL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPMNREGLLHRSGRTGRAGRKGLSAIVVPLNVRAKAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REA VSV WE AP+ E I  RD +R+L +P   +    +E   +  LL  H+P+++AA  
Sbjct: 361 REAQVSVTWEGAPTPEDILARDQERLLTEPALTEPATAEEFDAIARLLETHEPKQLAAAV 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR  RA   APE++ PVS+  G      +             F  + W+ LS+G  Q  +
Sbjct: 421 LRHFRAARTAPEDVIPVSVGEGPKPRAREE------------FGAARWYRLSMGHDQWVD 468

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
            +WL+PMLCR+  + R+ IG IRV  D TFV++     D     +  D+ ++ K      
Sbjct: 469 PKWLLPMLCRAGDLTRRDIGMIRVMQDQTFVQIHESMADRFEAGLGADRVMEGKCTVENL 528

Query: 541 PDFRGY--KSSGFKSKNSQDGATKRFKRFKGASK 572
           P       + +    + S+ G  K +++   A +
Sbjct: 529 PGMPEGLDRPAPKPDRWSKTGDRKPYEKKPYAPR 562


>gi|224585078|ref|YP_002638877.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469606|gb|ACN47436.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 626

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 168/625 (26%), Positives = 273/625 (43%), Gaps = 63/625 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------RDDSRAFKVGGGS 459
           D E +AA  L++ +     P  + P + +  +  F                R  +     
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
             +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 478 -RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 536

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK------------ 552
           + +    RT  L+K + ++ LG   P            F G +  G +            
Sbjct: 537 EVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRG 596

Query: 553 -----SKNSQDGATKRFKRFKGASK 572
                S   ++    R     G  +
Sbjct: 597 DGRRFSGERRESRGPRRDDSTGRRR 621


>gi|238760236|ref|ZP_04621381.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
 gi|238701559|gb|EEP94131.1| DEAD/DEAH box helicase domain protein [Yersinia aldovae ATCC 35236]
          Length = 660

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 174/621 (28%), Positives = 279/621 (44%), Gaps = 60/621 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELA+QV + L         V  V   GG     + 
Sbjct: 67  HNIDPT------LKAPQVLVLAPTRELAIQVAQALTDFSKHMSGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + K+   V I S      DI      +    ++  A+V 
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  +
Sbjct: 241 FLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ E + ER   +          ++  +  M   LLAK  PE   
Sbjct: 361 NVERTMKLTIPEVQLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEDGF 418

Query: 416 ----IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF-----------------------RD 448
               +AA  L++ +     P  + P +    +  F                       R 
Sbjct: 419 DLETLAAALLKMAQG--ERPLILPPEAPRRPQREFNSRDDRGSDRGRDRDRGDSRREPRA 476

Query: 449 DSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           DSR    +     R +      + + VG     E R ++  +     I+ + IG I++  
Sbjct: 477 DSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA 536

Query: 507 DLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF----------- 551
             + +E+      + +    RT  L+K + ++ LG  +P  R  + +G            
Sbjct: 537 SHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGAGGERRGGPRT 596

Query: 552 KSKNSQDGATKRFKRFKGASK 572
                +DGA    +R  G  +
Sbjct: 597 AGGERRDGAGAPPRRSFGGDR 617


>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
           'morsitans']
          Length = 622

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 38/600 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TSFADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  E       +AP  L +APTRELAVQVG            V  V   GG     + 
Sbjct: 66  HNIKPE------LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 180 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HD 412
           + R   +++     P+ E +  R   +        + ++  +  M   LLAK       D
Sbjct: 360 IERIMKLTIPEVDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELD 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGS 466
            E +AA  L++ +     P  ++P S++  R R     R        +     R +    
Sbjct: 418 IETLAAALLKMAQG--ERPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEM 475

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR 522
             + + VG     E R ++  +     I+ + IG I++    + +E+      + +    
Sbjct: 476 DLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFT 535

Query: 523 RTVKLDKGIQLKYLGGEKPDFRGYKS---------SGFKSKNSQDGATKRFKRFKGASKN 573
           RT  L+K + ++++G  +      +          SG +    +   + R +      + 
Sbjct: 536 RTRILNKPMNMQFVGEAQSRGGERRGGLGTGRGNYSGERRDGGRRSFSDRREGAGAGERR 595


>gi|300721544|ref|YP_003710819.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628036|emb|CBJ88585.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 649

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 165/563 (29%), Positives = 264/563 (46%), Gaps = 34/563 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE 
Sbjct: 14  LSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFTLPLLHNINAE- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV             V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + +  D   V I S      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ +++GR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
           ++     P  E + +R  ++   +    L+S   D+ + +   L    + + E +AA  L
Sbjct: 368 TIPEVELPDAELLGQRRLEKFAANVQQQLESSDLDQYRALLAKLGTDEELEMETLAAALL 427

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------------------- 462
           ++ +          PV         RDD R    G G RD                    
Sbjct: 428 KMAQGERPLILPPDPVRRPRREFNDRDDRRRNGNGFGDRDKSDRGDRGDRGDRPRRERRD 487

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGV 518
                 + + VG     E R ++  +     I+ + IG I++    + +E+      + +
Sbjct: 488 VGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPKGMPGELL 547

Query: 519 DLLRRTVKLDKGIQLKYLGGEKP 541
               RT  L+K + ++ +G  +P
Sbjct: 548 SHFTRTRILNKPLNMQLMGDAQP 570


>gi|320175526|gb|EFW50622.1| Cold-shock DEAD-box protein A [Shigella dysenteriae CDC 74-1112]
          Length = 626

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 161/567 (28%), Positives = 262/567 (46%), Gaps = 35/567 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------RDDSRAFKVGGGS 459
           D E +AA  L++ +        + P + +  +  F                R  +     
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
             +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 478 -RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 536

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           + +    RT  L+K + ++ LG  +P 
Sbjct: 537 EVLQHFTRTRILNKPMNMQLLGDAQPH 563


>gi|170025939|ref|YP_001722444.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis YPIII]
 gi|169752473|gb|ACA69991.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 664

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 173/623 (27%), Positives = 280/623 (44%), Gaps = 61/623 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             + A+        +P  L +APTRELAVQV   L        GV V    GG     + 
Sbjct: 67  HNIKAD------LKSPQVLVLAPTRELAVQVAEALSSFSKHINGVKVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + K+   V I S      DI      +     ++ A+V 
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 241 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ + + ER   +          ++  +  M   LLAK  PE+  
Sbjct: 361 NIERTMKLTIPEVELPNADLLSERRLAKFAAK--VSQQLESSDLDMYRALLAKLQPEEEF 418

Query: 416 ----IAAGFLRIHRAG----LCAPEEITPVSLVSGRD--------RFRDDSRA------- 452
               +AA  L++ +      L       P    + RD        R R DSR        
Sbjct: 419 DIETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSR 478

Query: 453 --------FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                    +     R +      + + VG     E R ++  +     I+ + IG I++
Sbjct: 479 SADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 538

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS----------- 549
               + +E+      + +    RT  L+K + ++ LG  +P  R  + +           
Sbjct: 539 FASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGG 598

Query: 550 -GFKSKNSQDGATKRFKRFKGAS 571
             F  +  +       + F G  
Sbjct: 599 RPFSGERREGAGAPPRRSFSGDR 621


>gi|149184|gb|AAA61345.1| RNA helicase [Klebsiella pneumoniae]
          Length = 659

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 164/572 (28%), Positives = 266/572 (46%), Gaps = 40/572 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 22  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 82  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 136 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 196 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R  AL+ ++DGR  + 
Sbjct: 256 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDIL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 316 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 375

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 376 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIHATAEGEEL 435

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR-----------------DRFRDDSRAFK 454
           D E +AA  L++ +        + PV+ +  R                 DR     R  +
Sbjct: 436 DVETLAAALLKMAQGERSL--IVPPVAPMRPRREFRDRDDSFDRRGDRNDRGPRGDREDR 493

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 494 PKR-ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 552

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
                + +    RT  L+K + ++ LG  +P 
Sbjct: 553 KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPR 584


>gi|319896568|ref|YP_004134761.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317432070|emb|CBY80420.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 613

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 172/588 (29%), Positives = 275/588 (46%), Gaps = 24/588 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLSGNDVLGMAQTGSGKTAAFALPLLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E ++    G  +    GG     + R
Sbjct: 66  QIDPSE------KHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   LN+S L+ +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPEN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  D   V I   N    DID     V    ++ A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L ++ F+  AL+G+++QQ R   L  +R+    + +
Sbjct: 240 EVEDFDAAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNRSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E ++E   ++    +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKGINEVELPNHEVLQECRRKKFVAKITKQLEHHDLEQYRSLLEDLFTADQDQENI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +       N +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMEKRRRERNERGDRRENPRSAERRGERKGYVNPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D T VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYTTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ +LG  K D     S  F  K    G   R +R +    +
Sbjct: 540 VLNKQMQMSFLGAVKSDNSRG-SDDFNGKCKGRGGDFRGERGRERGND 586


>gi|51594838|ref|YP_069029.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           32953]
 gi|108808981|ref|YP_652897.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua]
 gi|108810764|ref|YP_646531.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Nepal516]
 gi|145600551|ref|YP_001164627.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F]
 gi|153947592|ref|YP_001402544.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP
           31758]
 gi|153997472|ref|ZP_02022572.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|161484874|ref|NP_668033.2| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM 10]
 gi|161511438|ref|NP_991988.2| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162420533|ref|YP_001608294.1| ATP-dependent RNA helicase DeaD [Yersinia pestis Angola]
 gi|165925696|ref|ZP_02221528.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936744|ref|ZP_02225311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010049|ref|ZP_02230947.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214269|ref|ZP_02240304.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167398750|ref|ZP_02304274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420623|ref|ZP_02312376.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423076|ref|ZP_02314829.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186893847|ref|YP_001870959.1| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]
 gi|218930502|ref|YP_002348377.1| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92]
 gi|229839140|ref|ZP_04459299.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896629|ref|ZP_04511796.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229899704|ref|ZP_04514845.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900962|ref|ZP_04516086.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489144|ref|ZP_06206218.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294505188|ref|YP_003569250.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|51588120|emb|CAH19726.1| cold-shock dead-box protein A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774412|gb|ABG16931.1| cold-shock dead-box protein A [Yersinia pestis Nepal516]
 gi|108780894|gb|ABG14952.1| cold-shock dead-box protein A [Yersinia pestis Antiqua]
 gi|115349113|emb|CAL22076.1| cold-shock dead-box protein A [Yersinia pestis CO92]
 gi|145212247|gb|ABP41654.1| cold-shock dead-box protein A [Yersinia pestis Pestoides F]
 gi|149289109|gb|EDM39189.1| cold-shock dead-box protein A [Yersinia pestis CA88-4125]
 gi|152959087|gb|ABS46548.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353348|gb|ABX87296.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           Angola]
 gi|165915393|gb|EDR34003.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165922308|gb|EDR39485.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990956|gb|EDR43257.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204501|gb|EDR48981.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961429|gb|EDR57450.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167051254|gb|EDR62662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057246|gb|EDR66992.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|186696873|gb|ACC87502.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682301|gb|EEO78393.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229687196|gb|EEO79271.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695506|gb|EEO85553.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700407|gb|EEO88439.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262363250|gb|ACY59971.1| cold-shock dead-box protein A [Yersinia pestis D106004]
 gi|262367181|gb|ACY63738.1| cold-shock dead-box protein A [Yersinia pestis D182038]
 gi|270337648|gb|EFA48425.1| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM D27]
 gi|294355647|gb|ADE65988.1| cold-shock dead-box protein A [Yersinia pestis Z176003]
 gi|320016694|gb|ADW00266.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 664

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 172/623 (27%), Positives = 279/623 (44%), Gaps = 61/623 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             + A+        +P  L +APTRELAVQV   L         V  V   GG     + 
Sbjct: 67  HNIKAD------LKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + K+   V I S      DI      +     ++ A+V 
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 241 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ + + ER   +          ++  +  M   LLAK  PE+  
Sbjct: 361 NIERTMKLTIPEVELPNADLLSERRLAKFAAK--VSQQLESSDLDMYRALLAKLQPEEEF 418

Query: 416 ----IAAGFLRIHRAG----LCAPEEITPVSLVSGRD--------RFRDDSRA------- 452
               +AA  L++ +      L       P    + RD        R R DSR        
Sbjct: 419 DIETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSR 478

Query: 453 --------FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                    +     R +      + + VG     E R ++  +     I+ + IG I++
Sbjct: 479 SADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 538

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS----------- 549
               + +E+      + +    RT  L+K + ++ LG  +P  R  + +           
Sbjct: 539 FASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGG 598

Query: 550 -GFKSKNSQDGATKRFKRFKGAS 571
             F  +  +       + F G  
Sbjct: 599 RPFSGERREGAGAPPRRSFSGDR 621


>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 624

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 163/574 (28%), Positives = 259/574 (45%), Gaps = 40/574 (6%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L + + A+        AP  L +APTRELAVQV             V  V   GG  
Sbjct: 61  SLPLLNNIKAD------LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  +VVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + +  D   V I S      DI      V    ++ 
Sbjct: 175 AQIPAEHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----- 408
           R    + R   +++     P+ E + +R   +          ++  +  M   LL     
Sbjct: 355 RLLRNIERIMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLGKLQP 412

Query: 409 -AKHDPEKIAAGFLRIHRAGLCAPEEITPV---------------SLVSGRDRFRDDSRA 452
             + D E +AA  L++ +          PV                   G    R     
Sbjct: 413 QEELDIETLAAALLKMAQGERPLILPPDPVVERRPRREFRDRDERFERRGERNDRAPRGD 472

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            +     R        + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 473 DRPARRERREVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 532

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +      D +    RT  L+K + ++ +G  +P 
Sbjct: 533 LPKGMPGDLLSHFTRTRILNKPMNMQLMGEAQPH 566


>gi|182677259|ref|YP_001831405.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633142|gb|ACB93916.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 577

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 264/572 (46%), Positives = 359/572 (62%), Gaps = 9/572 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F      +  AL+ERGY   T VQ A+L  +   +D+LVSAQTGSGKT+A+GLAL S L
Sbjct: 2   TFSTRNPSLARALTERGYDQPTPVQAAVLEWEDSNRDLLVSAQTGSGKTIAYGLALGSAL 61

Query: 63  LAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LA+      A +APL L IAPTRELA+QV REL WLYA  GV +  C+GG+   RERRDL
Sbjct: 62  LADEKPLPVAPNAPLGLIIAPTRELALQVHRELSWLYAYAGVRLVTCVGGMDPRRERRDL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GAH+VVGTPGRL DH+    LN+ +LKAVVLDEADEMLDLGF +D+  +LD++  +RR
Sbjct: 122 DQGAHVVVGTPGRLRDHLERGALNLQNLKAVVLDEADEMLDLGFSEDLTTLLDAAAPERR 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSAT+   I  LA+ YQ+DA R+++ +    H+DIDYR V V   +  + +VN+LR 
Sbjct: 182 MLLFSATLPRDIVALAQRYQRDAARISVTAPAGGHADIDYRLVRVVPDEIPHVVVNLLRQ 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A  A VFC+TR S      +L+E  F  V LSGELSQ ER+ ALQ +R+GRAR+C+AT
Sbjct: 242 VEAPGAFVFCNTRESSRHLQALLSERGFSAVLLSGELSQNERNRALQALREGRARICVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGIDLP+L LVIHA+L ++   L HRSGRTGRAGRKG+SV +   + +RRAE+L +
Sbjct: 302 DVAARGIDLPNLGLVIHADLPNDAATLQHRSGRTGRAGRKGLSVLLASPSRRRRAEQLLK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + +VW+  PS E IR+ D +R+LQDPL +++   D++    +LL  + P+ IAA F 
Sbjct: 362 TLGLPIVWQAPPSAEEIRKLDQERLLQDPLLMEAAGEDDQASAAMLLEAYPPQAIAAAFA 421

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           R+ R    APEE+           F  DSR        +    G+ WF L +G KQ A+ 
Sbjct: 422 RLLREHRPAPEEVRDPG-------FGPDSRQGAGARRGQLGDAGAIWFKLGIGRKQNADP 474

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           RWL+PM+CR   I+R +IGAI++    T  EV+    +     +++     ++    E P
Sbjct: 475 RWLLPMICRRGKISRSAIGAIKIFERETKFEVAIPVAEQFAANIRIPDPEGVRIERAEAP 534

Query: 542 DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           D  G      +++  + G +K  +  K A K+
Sbjct: 535 DAHGMAGHAGETQAHRHG-SKPGRMPKPAGKS 565


>gi|304414099|ref|ZP_07395467.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283313|gb|EFL91709.1| DEAD-box RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 635

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 174/599 (29%), Positives = 278/599 (46%), Gaps = 35/599 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+     I  AL+  GY   + +Q   +   L   DVL  AQTGSGKT AFGL L 
Sbjct: 14  TSFTNLGLSDPILSALTNLGYKKPSPIQLECIPHLLNGCDVLGMAQTGSGKTAAFGLPLL 73

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
             + AE        +P  L +APTRELAVQV   L E+     GV V    GG     + 
Sbjct: 74  HNIKAE------IKSPQILVLAPTRELAVQVAEALTEFSKYIKGVNVVALYGGQRYDLQL 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN S L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 128 RALRQGPQVVVGTPGRLLDHLKRGTLNPSKLSGLVLDEADEMLRMGFIEDVENIMKQIPA 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   + I S      DI     +V    ++ A+V  
Sbjct: 188 VHQTALFSATMPEAIRRITRRFMKEPQEIRIQSSVTTRPDISQSYWMVDGMRKNEALVRF 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R + L+ ++DGR  + 
Sbjct: 248 LESEDFDAAIIFVRTKNATLEVAEALELNGYNSAALNGDMNQALRESTLERLKDGRLNIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + 
Sbjct: 308 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEHRERRLLKN 367

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HD 412
           + R   +++     P+ E + +R   +          ++  +  +   LL K       D
Sbjct: 368 IERTMKLTIPEVKLPNSELLSQRRLTKFSTK--VSKQLESHDLDVYRALLTKLQPEEGFD 425

Query: 413 PEKIAAGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            E +AA  L++ +    L  P +  P       +  R      +     R +      + 
Sbjct: 426 METLAAVLLKMAQGERPLIMPPDPVPRPTKIHHNSERRRINGERPVRRERRDVGDMELYR 485

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + VG     E R ++  +     I+ + IG I++    + +E+      + +    RT  
Sbjct: 486 IEVGRDDGVEVRHIVGAIANEGDISSRCIGNIKLFSSYSTIELPKSMPREILSHFTRTRI 545

Query: 527 LDKGIQLKYLGGEKP---DFRGYKS---SGFK------SKNSQDGATKRFKRFKGASKN 573
           L+K + ++ LG  +P     RGY S   SG +      +     G  KR +      + 
Sbjct: 546 LNKPMNMQLLGDAQPFESRGRGYASEWRSGGRLGAENTASRRSFGGDKRGEGNNSNHRR 604


>gi|260913800|ref|ZP_05920275.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
 gi|260632113|gb|EEX50289.1| ATP-dependent RNA helicase DeaD [Pasteurella dagmatis ATCC 43325]
          Length = 610

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 163/595 (27%), Positives = 284/595 (47%), Gaps = 30/595 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ + +A+S+ G+   + +Q+  +   L   DVL  AQTGSGKT AF L L +
Sbjct: 7   TFNDLGLPEFLLDAVSDLGFETPSPIQQTCIPYLLDGNDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  +         P  L +APTRELA+QV    E          +    GG     + R
Sbjct: 67  QIDLDK------KYPQMLVMAPTRELAIQVADACEQFCKYAKNTRIVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   L++S+L+ +VLDEADEML +GF DD+E ++   P++
Sbjct: 121 ALKQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   + I S    + DI      V    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L+ +R+G   + +
Sbjct: 241 EVENFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLERLRNGSLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++A R    +  +   L    ++     + D+  A  D E I
Sbjct: 361 EHLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLELYRSLLEDMFTADQDQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVG-----GGSRDNFKGSSWFS 470
           AA  L + +          P +   + R+R     R  +            N +    + 
Sbjct: 421 AAAMLMLLQGKQKLILPPDPIIDRKTSRERNDRRERGGRENPRSAERRGYGNPQPMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG     E R ++  +     IN + IG I++  D + +E+      + +++  +   
Sbjct: 481 IEVGRLDGVEVRHIVGAIANEGDINSRYIGHIKLYDDHSTIELPQGMPKELLNIFGKARV 540

Query: 527 LDKGIQLKYLGG-------EKPDFRG-YKSSGFKSKNSQDGATKRFKRFKGASKN 573
           ++K +Q+ ++         E+ DF G  + S  K +  +    +  ++FK     
Sbjct: 541 MNKQMQMSFVSAVNGGGNRERDDFGGDRRGSKRKGRGEEPRFGREDRKFKEKGNR 595


>gi|270265065|ref|ZP_06193328.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
 gi|270040999|gb|EFA14100.1| cold-shock DEAD box protein A [Serratia odorifera 4Rx13]
          Length = 655

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 177/617 (28%), Positives = 278/617 (45%), Gaps = 55/617 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 7   TSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
             L       +   AP  L +APTRELAVQV   + ++    TGV V    GG     + 
Sbjct: 67  HNLD------ASLKAPQILVLAPTRELAVQVAEAMTDFSKHMTGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + + KD   V I S      DI           ++ A+V  
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTAQGMRKNEALVRF 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 241 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 301 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +  M   LLAK  PE+   
Sbjct: 361 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLDMYRALLAKLQPEEELE 418

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGGG 458
              +AA  L++ +          PV     R  F              R D+R     GG
Sbjct: 419 METLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRGSDRGNDRRRDARPDSRDGG 478

Query: 459 ------SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  R +      + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 479 AERPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAGHSTIE 538

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKS--------------K 554
           +      + +    RT  L+K + ++ LG  +P  R  +  G                  
Sbjct: 539 LPKGMPGEILSHFTRTRILNKPMNMQLLGDAQPHERRERREGGAPGAGGERRGGARPFNG 598

Query: 555 NSQDGATKRFKRFKGAS 571
             ++GA    + F    
Sbjct: 599 ERREGAGAPRRSFSERR 615


>gi|297521217|ref|ZP_06939603.1| ATP-dependent RNA helicase DeaD [Escherichia coli OP50]
          Length = 569

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 162/572 (28%), Positives = 262/572 (45%), Gaps = 36/572 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
             + +    RT  L+K + ++ LG  +P   G
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGG 569


>gi|307297146|ref|ZP_07576960.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306877450|gb|EFN08680.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 584

 Score =  333 bits (852), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 264/588 (44%), Positives = 361/588 (61%), Gaps = 29/588 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE++P ++ +AL+ +GY  LT VQ  +  P+   +D++VSAQTGSGKTVAFGLA+A  L
Sbjct: 2   SFEHLPPLLSDALTRKGYEKLTPVQAEVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAGEL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L E  R   A  PLALAIAPTRELA+QV RELEWLY +    +A C+GG+   +ERR L 
Sbjct: 62  LGEQSRLPQAGKPLALAIAPTRELALQVSRELEWLYGEARARIATCVGGMDAAKERRALS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD +P++RR 
Sbjct: 122 HGAHIVVGTPGRLRDHLERGALDLSDLKTVVLDEADEMLDMGFREDLEEILDGAPQERRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQKDA+R++  S+ R H DI Y+A+ VA +D +NA+VN+LRYH
Sbjct: 182 LLFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQALTVAPADIENAVVNLLRYH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RD RARVC+ATD
Sbjct: 242 EAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R 
Sbjct: 302 VAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRG 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A + V W   PS EAI+E+D  R+ +  +    +   +  +   LL     ++IAA  ++
Sbjct: 362 AKIPVEWGTPPSKEAIQEQDNARLREKLMERAELDEQDWALGAELLEAKSAKEIAAMLVK 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
             RA L APEE+   S    R              G R  F+ + WF + +G  Q A+ R
Sbjct: 422 SARAALPAPEELLDASEAPQRRD------------GPRPGFEDTVWFRMDIGRSQNADPR 469

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL-----DKGIQLKY-- 535
           W++P++CR   ++RQ IGAIR+    T  E+ +         +K      D+G ++ +  
Sbjct: 470 WILPLICRRGHVSRQDIGAIRIAAHETLFEIPSAIASRFVSALKRTGEASDEGAEVSFQQ 529

Query: 536 -----LGGEKPDFRGYKSSGFKSKNS-QDGATKR----FKRFKGASKN 573
                    + + R     G + K    D   +      + FKG  K 
Sbjct: 530 VEGTPREAARENRREGPREGPRGKGRPNDRGPRPPAHSPRPFKGGPKR 577


>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
 gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
 gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
          Length = 602

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 167/586 (28%), Positives = 279/586 (47%), Gaps = 22/586 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G+ V    GG     + R
Sbjct: 67  QIDPTQ------RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S LK +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPET 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + KD   V I +  R   DI+    LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  +R GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LVI+ ++    E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E + E+  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 ENLIKKPINEVAIPNHEILMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG---SSWFSLSV 473
           AA  + + +          PV   +  +R RD +       G             + + +
Sbjct: 421 AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIEL 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR-----RTVKLD 528
           G +   E R ++  +     I+ + IG I++    + +E+     + L      +   L 
Sbjct: 481 GREDGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIELPQGMPNHLVQHFAHKARVLS 540

Query: 529 KGIQLKYLGGE--KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           K +Q+  LG      +   ++  G +  +  D   +R   F    K
Sbjct: 541 KPMQMTLLGSANSASNANPFEGRGRRGNDRNDRGGRRDGGFNKDRK 586


>gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 625

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 171/595 (28%), Positives = 271/595 (45%), Gaps = 42/595 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L
Sbjct: 5   VTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            + L  E        AP  L +APTRELAVQV             V  V   GG     +
Sbjct: 65  LNNLKPE------LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P
Sbjct: 119 LRALRQGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V 
Sbjct: 179 AEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R   
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKH 411
            + R   +++     P+ E + +R   +          ++  +  M   LL       + 
Sbjct: 359 NVERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLTKLQPQEEL 416

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF-----------------RDDSRAFK 454
           D E +AA  L++ +     P  + P  +   R  F                 R+     +
Sbjct: 417 DVETLAAALLKMAQG--ERPLILPPDPVFRPRREFRDRDDSRGDRRRDPRDSRESRDGDR 474

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 475 PQRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 534

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
                D +    RT  L+K + ++ LG  +P  R            +DGA  R  
Sbjct: 535 KGMPGDLLSHFTRTRILNKPMNMQLLGDAQPHERRGGGR--PGGERRDGAAPRRS 587


>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 627

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 167/600 (27%), Positives = 275/600 (45%), Gaps = 38/600 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 11  TSFADLGLKAPILNALTDLGYEKPSPIQSACIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 70

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  E       +AP  L +APTRELAVQVG            V  V   GG     + 
Sbjct: 71  HNIKPE------LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQL 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 125 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENILAQVPA 184

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 185 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVQGMRKNEALVRF 244

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  + 
Sbjct: 245 LEAEDFDAAIIFVRTKNATLEVAEALELSGYNSAALNGDMNQALREQTLDRLKDGRLDIL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 305 IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 364

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HD 412
           + R   +++     P+ E +  R   +        + ++  +  M   LLAK       D
Sbjct: 365 IERIMKLTIPEVDLPTAEVLSTRRLAKFAAK--VQNQLESSDLDMYRALLAKLQPAEELD 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR------AFKVGGGSRDNFKGS 466
            E +AA  L++ +     P  ++P S++  R R     R        +     R +    
Sbjct: 423 IETLAAALLKMAQG--ERPLILSPDSVIERRPRREFCERDERREGGERPPRRERRDVGEM 480

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR 522
             + + VG     E R ++  +     I+ + IG I++    + +E+      + +    
Sbjct: 481 DLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFT 540

Query: 523 RTVKLDKGIQLKYLGGEKPDFRGYKS---------SGFKSKNSQDGATKRFKRFKGASKN 573
           RT  L+K + ++++G  +      +          SG +    +   + R +      + 
Sbjct: 541 RTRILNKPMNMQFVGEAQSRGGERRGGLGTGRGNYSGERRDGGRRSFSDRREGAGAGERR 600


>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
 gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 624

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 162/575 (28%), Positives = 260/575 (45%), Gaps = 41/575 (7%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I  ALSE GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETSFASLGLSAPILNALSEMGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L + + A+        AP  L +APTRELAVQV             V  V   GG  
Sbjct: 61  SLPLLNNIKAD------LKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  +VVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + +  D   V I S      DI      V    ++ 
Sbjct: 175 AQIPAEHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWTVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALIRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----- 408
           R    + R   +++     P+ E + +R   +          ++  +  M   LL     
Sbjct: 355 RLLRNIERTMKLTIPEVDLPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLGKLQP 412

Query: 409 -AKHDPEKIAAGFLRIHRAGLCAPEEITPV----------------SLVSGRDRFRDDSR 451
             + D E +AA  L++ +          PV                     R+       
Sbjct: 413 QEELDIETLAAALLKMAQGERPLILPPDPVVERRPRREFRERDDRFERRGERNERGPRGG 472

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +     R +      + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 473 DERPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 532

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           E+      D +    RT  L+K + ++ +G  +P 
Sbjct: 533 ELPKGMPGDLLSHFTRTRILNKPMNMQLMGEAQPH 567


>gi|237730082|ref|ZP_04560563.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
 gi|226908688|gb|EEH94606.1| ATP-dependent RNA helicase DeaD [Citrobacter sp. 30_2]
          Length = 642

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 170/642 (26%), Positives = 276/642 (42%), Gaps = 81/642 (12%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ + + +R  ++          ++  +      LLAK  PE+   
Sbjct: 360 IERTMKLTIPEVELPNADLLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKMQPEEELD 417

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRD------------------RFRDDSRAFK 454
              +AA  L++ +     P  + P + +  +                   R R+D     
Sbjct: 418 IETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRDRNDRGGED 475

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 476 RPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 535

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPD---------------------------- 542
                D +    RT  L+K + ++ +G   P                             
Sbjct: 536 KGMPGDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGRFSGERREGGRGEGRNFSG 595

Query: 543 ------------FRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
                       F G +  G +     D +  R     G  +
Sbjct: 596 ERREGGRGDGRRFSGERREGNRGPRRDDSSAPRRDDSAGRRR 637


>gi|307313131|ref|ZP_07592757.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306907042|gb|EFN37550.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315062470|gb|ADT76797.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323376942|gb|ADX49210.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 629

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEQ 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 601

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 167/585 (28%), Positives = 279/585 (47%), Gaps = 21/585 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G+ V    GG     + R
Sbjct: 67  QIDPTQ------RHPQMLVMAPTRELAIQVADACEQFAKNMKGIRVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S LK +VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPET 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + KD   V I +  R   DI+    LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAPDIEQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  +R GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLRSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LVI+ ++    E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E + E+  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 ENLIKKPINEVAIPNHEILMEKRREKFKARISKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG---SSWFSLSV 473
           AA  + + +          PV   +  +R RD +       G             + + +
Sbjct: 421 AAAMMMLLQEKQKLILPPDPVVRAARSERGRDRNERNDRRNGREHRENNGVAMDLYRIEL 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR-----RTVKLD 528
           G +   E R ++  +     I+ + IG I++    + +E+     + L      +   L 
Sbjct: 481 GREDGVEVRHIVGAIANEGDISSRYIGHIKLYDKYSTIELPQGMPNHLVQHFAHKARVLS 540

Query: 529 KGIQLKYLGGE-KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           K +Q+  LG     +   ++  G +  +  D   +R   F    K
Sbjct: 541 KPMQMTLLGSNSASNANPFEGRGRRGNDRNDRGGRRDGGFNKDRK 585


>gi|21957415|gb|AAM84284.1|AE013672_2 inducible ATP-independent RNA helicase [Yersinia pestis KIM 10]
 gi|45435306|gb|AAS60865.1| inducible ATP-independent RNA helicase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 669

 Score =  332 bits (851), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 172/623 (27%), Positives = 279/623 (44%), Gaps = 61/623 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 12  TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 71

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             + A+        +P  L +APTRELAVQV   L         V  V   GG     + 
Sbjct: 72  HNIKAD------LKSPQVLVLAPTRELAVQVAEALSSFSKHINGVNVVALYGGQRYDVQL 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 126 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + K+   V I S      DI      +     ++ A+V 
Sbjct: 186 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVR 245

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 246 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 305

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 306 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 365

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ + + ER   +          ++  +  M   LLAK  PE+  
Sbjct: 366 NIERTMKLTIPEVELPNADLLSERRLAKFAAK--VSQQLESSDLDMYRALLAKLQPEEEF 423

Query: 416 ----IAAGFLRIHRAG----LCAPEEITPVSLVSGRD--------RFRDDSRA------- 452
               +AA  L++ +      L       P    + RD        R R DSR        
Sbjct: 424 DIETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSR 483

Query: 453 --------FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                    +     R +      + + VG     E R ++  +     I+ + IG I++
Sbjct: 484 SADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL 543

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS----------- 549
               + +E+      + +    RT  L+K + ++ LG  +P  R  + +           
Sbjct: 544 FASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGG 603

Query: 550 -GFKSKNSQDGATKRFKRFKGAS 571
             F  +  +       + F G  
Sbjct: 604 RPFSGERREGAGAPPRRSFSGDR 626


>gi|198242882|ref|YP_002217254.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937398|gb|ACH74731.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326625031|gb|EGE31376.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 629

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 167/627 (26%), Positives = 272/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 TATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|200386509|ref|ZP_03213121.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199603607|gb|EDZ02152.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 629

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 272/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMSGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|194433764|ref|ZP_03066039.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|194418027|gb|EDX34121.1| cold-shock DEAD box protein A [Shigella dysenteriae 1012]
 gi|332086479|gb|EGI91626.1| cold-shock DEAD box protein A [Shigella dysenteriae 155-74]
          Length = 603

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|332345119|gb|AEE58453.1| cold-shock DEAD box protein A [Escherichia coli UMNK88]
          Length = 629

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 262/569 (46%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + +++ K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRHFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|161486782|ref|NP_806876.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161501917|ref|NP_457662.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|213052975|ref|ZP_03345853.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425440|ref|ZP_03358190.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646152|ref|ZP_03376205.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850431|ref|ZP_03381329.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289825794|ref|ZP_06544962.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 629

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 274/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|162138368|ref|YP_542567.2| ATP-dependent RNA helicase DeaD [Escherichia coli UTI89]
          Length = 629

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|114327198|ref|YP_744355.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114315372|gb|ABI61432.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 731

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 265/581 (45%), Positives = 357/581 (61%), Gaps = 21/581 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F  +   +  AL  +GY +LT VQ+A+L  D  E+D+LVSAQTGSGKTVA+GLALA TL
Sbjct: 46  LFPALHPTLKAALDAKGYTSLTPVQDAVLTADAAERDLLVSAQTGSGKTVAYGLALADTL 105

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  ++R   A APLAL +APTRELA+QV +EL WLY   G  V  CIGG+   RE + L+
Sbjct: 106 LGADERLGQAGAPLALIVAPTRELAMQVQQELLWLYGPAGARVVSCIGGMDARREAQALE 165

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G HIVVGTPGRLCDH+    LN+S L+AVVLDEADEMLDLGFRD++E ILD++P +RR 
Sbjct: 166 RGCHIVVGTPGRLCDHLGRGRLNLSRLRAVVLDEADEMLDLGFRDELEEILDATPAERRT 225

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI+  I  LAK YQ +A+R++  S N+ H+DIDYR V V   +  +++VN+LR++
Sbjct: 226 LLFSATIAREIAALAKRYQTNALRIDTVSRNKPHADIDYRVVRVLPHEARHSVVNVLRFY 285

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A  A+VFC TR  V  F   L E  F  VALSGELSQ ERS AL ++R+G+ARVC+ATD
Sbjct: 286 DAPIAMVFCGTREEVRHFQASLMERGFSSVALSGELSQTERSRALHLLREGQARVCVATD 345

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+DLP L+LVIHA+L +N   LLHRSGRTGRAGRKG+SV + P N QR+A++L   
Sbjct: 346 VAARGLDLPALDLVIHADLPTNSATLLHRSGRTGRAGRKGVSVLIAPVNRQRKADQLLHT 405

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W P P+VE I  RD +R+L+ P     I  DE++   +L+   D E +A   LR
Sbjct: 406 AGIRAEWTPVPTVEEISIRDRERMLESPALSAPISDDEREAARILMEGRDAEALAVAVLR 465

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSR---------------AFKVGGGSRDNFKGSS 467
           +HR  L  PE++  V          D  +               A      +    + + 
Sbjct: 466 LHRGRLPEPEDVQVVHERPSNSERGDRPQRERVRDRDRSDQDRPARAPRRDNDGEARSTR 525

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
           WF LSVG    A+ +W++P+LCR+  I +  IGAIR+    TF E+ +   D     ++ 
Sbjct: 526 WFKLSVGRNDNADPKWIVPLLCRAGHIRKPDIGAIRIMETETFFEIDSARADTFSSAIEG 585

Query: 528 DKGIQL------KYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
            +  ++          G    +    S+  + K   D A +
Sbjct: 586 READEVAISAASAPPAGVSGGYTPRPSTAERGKGGFDRAMR 626


>gi|168463497|ref|ZP_02697414.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633290|gb|EDX51704.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 629

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 273/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEDEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|39546364|ref|NP_462193.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56415212|ref|YP_152287.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161616286|ref|YP_001590251.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|162139541|ref|YP_218208.2| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167552072|ref|ZP_02345825.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167990155|ref|ZP_02571255.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168231889|ref|ZP_02656947.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237981|ref|ZP_02663039.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243114|ref|ZP_02668046.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262709|ref|ZP_02684682.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819651|ref|ZP_02831651.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447369|ref|YP_002047310.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470855|ref|ZP_03076839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194736232|ref|YP_002116230.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249912|ref|YP_002148207.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197265213|ref|ZP_03165287.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364142|ref|YP_002143779.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204928320|ref|ZP_03219520.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|238910075|ref|ZP_04653912.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|56129469|gb|AAV78975.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161365650|gb|ABX69418.1| hypothetical protein SPAB_04091 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405673|gb|ACF65892.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194457219|gb|EDX46058.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711734|gb|ACF90955.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095619|emb|CAR61187.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213615|gb|ACH51012.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197243468|gb|EDY26088.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197289140|gb|EDY28509.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204322642|gb|EDZ07839.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205323189|gb|EDZ11028.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205331110|gb|EDZ17874.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333912|gb|EDZ20676.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337772|gb|EDZ24536.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205343559|gb|EDZ30323.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348425|gb|EDZ35056.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267995476|gb|ACY90361.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312914306|dbj|BAJ38280.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087727|emb|CBY97491.1| Cold-shock DEAD box protein A homolog; ATP-dependent RNA helicase
           deaD homolog [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225964|gb|EFX51018.1| Cold-shock DEAD-box protein A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615285|gb|EFY12206.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618356|gb|EFY15247.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622839|gb|EFY19683.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626839|gb|EFY23636.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631408|gb|EFY28168.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635325|gb|EFY32039.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643460|gb|EFY40023.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647104|gb|EFY43605.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648907|gb|EFY45352.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655099|gb|EFY51410.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657702|gb|EFY53970.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664198|gb|EFY60396.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667481|gb|EFY63643.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674729|gb|EFY70821.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675638|gb|EFY71711.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682274|gb|EFY78297.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684877|gb|EFY80875.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716278|gb|EFZ07849.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323191728|gb|EFZ76980.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199035|gb|EFZ84132.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204265|gb|EFZ89274.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207612|gb|EFZ92559.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211335|gb|EFZ96179.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214723|gb|EFZ99472.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323224056|gb|EGA08349.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230295|gb|EGA14414.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233271|gb|EGA17365.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239308|gb|EGA23358.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242441|gb|EGA26467.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246951|gb|EGA30917.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254116|gb|EGA37936.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255233|gb|EGA39010.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262696|gb|EGA46252.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264006|gb|EGA47514.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269392|gb|EGA52847.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 629

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 273/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|218701933|ref|YP_002409562.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI39]
 gi|218371919|emb|CAR19775.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
          Length = 629

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 262/569 (46%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    ++       K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLEQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|170749797|ref|YP_001756057.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656319|gb|ACB25374.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 583

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 271/572 (47%), Positives = 353/572 (61%), Gaps = 5/572 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  ALS+RGY + T VQ A+L      +D+LVSAQTGSGKTVA+GLA+AS L+
Sbjct: 3   FPTLPAPLARALSDRGYADPTPVQAAVLEAAAGSRDLLVSAQTGSGKTVAYGLAMASMLI 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E DR  P +APLAL IAPTRELA+QV REL WLY   G  VA C+GG+   RE R L  
Sbjct: 63  GEADRLPPPAAPLALVIAPTRELALQVQRELSWLYGPAGGRVAACVGGMDPRRESRMLAE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+  + L+ + L+AVVLDEADEMLDLGFR+DIEFIL ++P +R   
Sbjct: 123 GTHIVVGTPGRLRDHLERRNLDPTALRAVVLDEADEMLDLGFREDIEFILSATPPERATY 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ+DA+R+ I  E R H+DI YRAV +   + ++ ++N+LR   
Sbjct: 183 LFSATLPKGIEALAERYQRDALRLAIKGETRGHADIAYRAVRIMPRETEHVVLNLLREAD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           AK AIVFC+TR +V      L E  F VVALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 243 AKTAIVFCNTRNAVRHLQASLTERGFSVVALSGELGQGERNAALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L  + E + HRSGRTGRAGRKG SV +IP + +RRAE++F  A
Sbjct: 303 AARGIDLPSLSLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVLLIPNSRRRRAEQMFAIA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            VS  W   PS + IR  D +R+L DPLF +    ++  + + LLA   PE++AA   R+
Sbjct: 363 KVSPEWSGPPSADEIRRLDGERMLSDPLFAEPPAEEDVALAETLLAGKSPEELAALLARV 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +R  L APEE++      GR    +      +          + WF L++G +  A+ R 
Sbjct: 423 YRTRLPAPEEVSDPG--EGRAPRGERPPYDPMDPERIAAMGPAVWFRLNLGRRDNADPRR 480

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK---YLGGEK 540
           L+PML R  GI RQ IGAIR+    T  EV  +       +   +   +++     G   
Sbjct: 481 LLPMLTRRGGIGRQEIGAIRIFDRETKFEVRGNAAARFAESFARNGSPEIQVEALAGDGA 540

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           P  R    +G K   S      + K  +   K
Sbjct: 541 PAERRGPPAGPKGFASPRAGKHQRKVERTGPK 572


>gi|163732640|ref|ZP_02140085.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
 gi|161394000|gb|EDQ18324.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseobacter litoralis Och 149]
          Length = 703

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 286/573 (49%), Positives = 373/573 (65%), Gaps = 25/573 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+E+GY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+A TLL + +R
Sbjct: 3   KTLSDALAEQGYDTLTPVQEAVTAPELAQADLLVSAQTGSGKTVGFGLAIAPTLLDDQER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL IAPTRELA QV REL WLYAK G VV  C+GG+    ERR L  GAH+V
Sbjct: 63  FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   + +++L+AVVLDEADEMLDLGFRD++EFILD +PK RR LMFSAT
Sbjct: 123 VATPGRLCDHIKRGNIELANLRAVVLDEADEMLDLGFRDELEFILDEAPKDRRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA++YQ+DA R+   SENRQH+DI+YRA+     D +NAI+N+LR++ AKNAI
Sbjct: 183 VPKAIAKLAESYQRDAQRIATVSENRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A +   
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRSKANRLLGSAKLKAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W+  PS   +  +D  R+L DPL+  ++  D +++V  L       ++A   +  ++A  
Sbjct: 363 WDEPPSAAEVNAQDTTRLLSDPLWTATVGEDSEELVAQLAQDFTATQLAQAVVSFYQAQR 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+T       R R                 F  S WFS+SVG    AE R L+PM+
Sbjct: 423 SAPEELTDAGTPDDRPR---------------KTFGPSVWFSVSVGRDTGAEPRTLLPMI 467

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKY------LGG 538
           C    + +  IGAIR++ D +FVEV A   D L       + L+ GI L        LG 
Sbjct: 468 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAAVGPDMTLEAGIVLTRLAQAPDLGQ 527

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           ++P      +  ++ K  +D   +  +  K A 
Sbjct: 528 DRPGGGKPGAKPYRKKRPEDRDARPERAAKPAR 560


>gi|301159830|emb|CBW19349.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131640|gb|ADX19070.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 629

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 273/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RVLRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|304396354|ref|ZP_07378235.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304355863|gb|EFM20229.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 642

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 169/606 (27%), Positives = 270/606 (44%), Gaps = 44/606 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+V  
Sbjct: 180 DHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGR-KTDALVRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  +      LLAK  PE    
Sbjct: 359 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLDQYRALLAKMQPEDEMD 416

Query: 416 ---IAAGFLRI---HRAGLCAPEEITP------------------VSLVSGRDRFRDDSR 451
              +AA  L++    R  +  PE   P                   +      R   +SR
Sbjct: 417 LETLAAALLKMAQGERPLILPPEAPRPARREYRDRDERDGRRDSREARGDRAPRENRESR 476

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                   R +      + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 477 DGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTI 536

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDF-RGYKSSGFKSKNSQDGATKRFKR 566
           E+      D +    RT  L+K + ++ LG  +P+  RG +      +            
Sbjct: 537 ELPKGMPGDVLQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGGERRGPGAGGPGAAN 596

Query: 567 FKGASK 572
            +G  +
Sbjct: 597 REGGRR 602


>gi|194446047|ref|YP_002042538.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404710|gb|ACF64932.1| cold-shock DEAD box protein A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 629

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 272/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 597

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 598 RGDGRRFSGERRESRGPRRDDSTGRRR 624


>gi|163842399|ref|YP_001626803.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
 gi|163673122|gb|ABY37233.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella suis ATCC 23445]
          Length = 626

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 272/600 (45%), Positives = 379/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +N + LLHRSGRTGRAGRKG  V V+P   +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNSDTLLHRSGRTGRAGRKGTCVLVVPFLRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|332998804|gb|EGK18400.1| cold-shock DEAD box protein A [Shigella flexneri VA-6]
          Length = 629

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|89109927|ref|AP_003707.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111550|ref|NP_417631.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110643403|ref|YP_671133.1| ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|161485815|ref|NP_708963.3| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 301]
 gi|161486111|ref|NP_755783.2| ATP-dependent RNA helicase DeaD [Escherichia coli CFT073]
 gi|161486429|ref|NP_838673.2| ATP-dependent RNA helicase DeaD [Shigella flexneri 2a str. 2457T]
 gi|161984848|ref|YP_409545.2| ATP-dependent RNA helicase DeaD [Shigella boydii Sb227]
 gi|161986443|ref|YP_312118.2| ATP-dependent RNA helicase DeaD [Shigella sonnei Ss046]
 gi|170018586|ref|YP_001723540.1| ATP-dependent RNA helicase DeaD [Escherichia coli ATCC 8739]
 gi|170082699|ref|YP_001732019.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684314|ref|YP_001745436.1| ATP-dependent RNA helicase DeaD [Escherichia coli SMS-3-5]
 gi|191172194|ref|ZP_03033737.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|193062213|ref|ZP_03043309.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194427708|ref|ZP_03060255.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194438758|ref|ZP_03070844.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215488480|ref|YP_002330911.1| ATP-dependent RNA helicase DeaD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218550447|ref|YP_002384238.1| ATP-dependent RNA helicase DeaD [Escherichia fergusonii ATCC 35469]
 gi|218560234|ref|YP_002393147.1| ATP-dependent RNA helicase DeaD [Escherichia coli S88]
 gi|218691454|ref|YP_002399666.1| ATP-dependent RNA helicase DeaD [Escherichia coli ED1a]
 gi|218696869|ref|YP_002404536.1| ATP-dependent RNA helicase DeaD [Escherichia coli 55989]
 gi|238902266|ref|YP_002928062.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253772002|ref|YP_003034833.1| ATP-dependent RNA helicase DeaD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163106|ref|YP_003046214.1| ATP-dependent RNA helicase DeaD [Escherichia coli B str. REL606]
 gi|256018918|ref|ZP_05432783.1| ATP-dependent RNA helicase DeaD [Shigella sp. D9]
 gi|256024262|ref|ZP_05438127.1| ATP-dependent RNA helicase DeaD [Escherichia sp. 4_1_40B]
 gi|260845977|ref|YP_003223755.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|293416596|ref|ZP_06659235.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|301025993|ref|ZP_07189475.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|306816494|ref|ZP_07450626.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307139849|ref|ZP_07499205.1| ATP-dependent RNA helicase DeaD [Escherichia coli H736]
 gi|312968499|ref|ZP_07782708.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|312972567|ref|ZP_07786740.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|331659451|ref|ZP_08360393.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331664776|ref|ZP_08365681.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331669991|ref|ZP_08370836.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|71154182|sp|P0A9P7|DEAD_ECOL6 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|71154193|sp|P0A9P6|DEAD_ECOLI RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD; AltName:
           Full=Translation factor W2
 gi|71154222|sp|P0A9P8|DEAD_SHIFL RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|85675958|dbj|BAE77208.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082221|gb|AAC76196.2| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|110344995|gb|ABG71232.1| probable ATP-dependent RNA helicase DeaD [Escherichia coli 536]
 gi|169753514|gb|ACA76213.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169890534|gb|ACB04241.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522032|gb|ACB20210.1| cold-shock DEAD box protein A [Escherichia coli SMS-3-5]
 gi|190907504|gb|EDV67100.1| cold-shock DEAD box protein A [Escherichia coli F11]
 gi|192932433|gb|EDV85031.1| cold-shock DEAD box protein A [Escherichia coli E22]
 gi|194414216|gb|EDX30491.1| cold-shock DEAD box protein A [Escherichia coli B171]
 gi|194422230|gb|EDX38231.1| cold-shock DEAD box protein A [Escherichia coli 101-1]
 gi|215266552|emb|CAS10991.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218353601|emb|CAU99787.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218357988|emb|CAQ90634.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218367003|emb|CAR04774.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429018|emb|CAR09825.1| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|238860045|gb|ACR62043.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242378707|emb|CAQ33497.1| DeaD, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323046|gb|ACT27648.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975007|gb|ACT40678.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979163|gb|ACT44833.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761124|dbj|BAI32621.1| ATP-dependent RNA helicase DeaD [Escherichia coli O103:H2 str.
           12009]
 gi|260447809|gb|ACX38231.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|291431952|gb|EFF04935.1| ATP-dependent RNA helicase DeaD [Escherichia coli B185]
 gi|299879888|gb|EFI88099.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 196-1]
 gi|305850059|gb|EFM50518.1| ATP-dependent RNA helicase DeaD [Escherichia coli NC101]
 gi|307555258|gb|ADN48033.1| cold-shock DeaD box ATP-dependent RNA helicase [Escherichia coli
           ABU 83972]
 gi|307625237|gb|ADN69541.1| ATP-dependent RNA helicase DeaD [Escherichia coli UM146]
 gi|309703590|emb|CBJ02930.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           ETEC H10407]
 gi|310332509|gb|EFP99722.1| cold-shock DEAD box protein A [Escherichia coli 1827-70]
 gi|312286717|gb|EFR14628.1| cold-shock DEAD box protein A [Escherichia coli 2362-75]
 gi|313648596|gb|EFS13038.1| cold-shock DEAD box protein A [Shigella flexneri 2a str. 2457T]
 gi|315137750|dbj|BAJ44909.1| ATP-dependent RNA helicase DeaD [Escherichia coli DH1]
 gi|320181438|gb|EFW56356.1| Cold-shock DEAD-box protein A [Shigella boydii ATCC 9905]
 gi|320194648|gb|EFW69278.1| Cold-shock DEAD-box protein A [Escherichia coli WV_060327]
 gi|323162856|gb|EFZ48691.1| cold-shock DEAD box protein A [Escherichia coli E128010]
 gi|323165120|gb|EFZ50910.1| cold-shock DEAD box protein A [Shigella sonnei 53G]
 gi|323173578|gb|EFZ59207.1| cold-shock DEAD box protein A [Escherichia coli LT-68]
 gi|323189215|gb|EFZ74499.1| cold-shock DEAD box protein A [Escherichia coli RN587/1]
 gi|323936142|gb|EGB32436.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941736|gb|EGB37915.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323951318|gb|EGB47193.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323957689|gb|EGB53403.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961066|gb|EGB56681.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323966344|gb|EGB61778.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323970273|gb|EGB65544.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|323979119|gb|EGB74197.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324115232|gb|EGC09196.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|324119529|gb|EGC13411.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|325498745|gb|EGC96604.1| ATP-dependent RNA helicase [Escherichia fergusonii ECD227]
 gi|327251943|gb|EGE63629.1| cold-shock DEAD box protein A [Escherichia coli STEC_7v]
 gi|330909220|gb|EGH37734.1| cold-shock DEAD-box protein A [Escherichia coli AA86]
 gi|331054033|gb|EGI26062.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA206]
 gi|331058024|gb|EGI30006.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA143]
 gi|331062904|gb|EGI34818.1| ATP-dependent RNA helicase DeaD [Escherichia coli TA271]
 gi|332086106|gb|EGI91268.1| cold-shock DEAD box protein A [Shigella boydii 5216-82]
 gi|332090717|gb|EGI95811.1| cold-shock DEAD box protein A [Shigella boydii 3594-74]
 gi|332752322|gb|EGJ82712.1| cold-shock DEAD box protein A [Shigella flexneri 4343-70]
 gi|332752849|gb|EGJ83234.1| cold-shock DEAD box protein A [Shigella flexneri K-671]
 gi|332754390|gb|EGJ84756.1| cold-shock DEAD box protein A [Shigella flexneri 2747-71]
 gi|332765159|gb|EGJ95386.1| csdA, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|332999241|gb|EGK18827.1| cold-shock DEAD box protein A [Shigella flexneri K-272]
 gi|333000407|gb|EGK19990.1| cold-shock DEAD box protein A [Shigella flexneri K-218]
 gi|333014540|gb|EGK33887.1| cold-shock DEAD box protein A [Shigella flexneri K-304]
 gi|333014963|gb|EGK34307.1| cold-shock DEAD box protein A [Shigella flexneri K-227]
          Length = 629

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|170766108|ref|ZP_02900919.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
 gi|170125254|gb|EDS94185.1| cold-shock DEAD box protein A [Escherichia albertii TW07627]
          Length = 627

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 171/626 (27%), Positives = 271/626 (43%), Gaps = 67/626 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS---------- 459
           D E +AA  L++ +    L  P +         RDR     R     G            
Sbjct: 420 DLETLAAALLKMVQGERTLIVPPDAPMRPRREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
           R +      + + VG     E R ++  +     I+ + IG I++    + +E+      
Sbjct: 480 RRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPG 539

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPD--------------------------------- 542
           + +    RT  L+K + ++ LG  +P                                  
Sbjct: 540 EVLQHFTRTRILNKPMNMQLLGDAQPHTERRGGGRGFGGERREGGRNFSGERREGGRGDG 599

Query: 543 --FRGYKSSGFKSKNSQDGATKRFKR 566
             F G +  G   +       +RF  
Sbjct: 600 RRFSGERREGRAPRRDDSTGRRRFGG 625


>gi|312947721|gb|ADR28548.1| ATP-dependent RNA helicase DeaD [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 629

 Score =  331 bits (847), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLGKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|238761773|ref|ZP_04622747.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
 gi|238699887|gb|EEP92630.1| DEAD/DEAH box helicase domain protein [Yersinia kristensenii ATCC
           33638]
          Length = 658

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 174/618 (28%), Positives = 281/618 (45%), Gaps = 55/618 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELA+QV + L         V  V   GG     + 
Sbjct: 67  HNIDPT------LKAPQVLVLAPTRELAIQVAQALTDFSKHMDGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + K+   V I S      DI      +    ++  A+V 
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L  ++DGR  +
Sbjct: 241 FLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLDRLKDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ E + ER   +          ++  +  M   LLAK  PE+  
Sbjct: 361 NVERTMKLTIPEVQLPNAELLGERRLAKFAAK--VGQQLESSDLDMYRALLAKLQPEEEF 418

Query: 416 ----IAAGFLRIHRA--GLCAPEEITPVSLV---------SGRDRFRDDSRA-------- 452
               +AA  L++ +    L  P E                S R R R+DSR         
Sbjct: 419 DLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRNDSRREPRSDNRD 478

Query: 453 --FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
              +     R +      + + VG     E R ++  +     I+ + IG I++    + 
Sbjct: 479 GGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 538

Query: 511 VEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS------------GFKSK 554
           +E+      + +    RT  L+K + ++ LG  +P  R  + +                 
Sbjct: 539 IELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGAGRSAGG 598

Query: 555 NSQDGATKRFKRFKGASK 572
             ++GA    +R  G+ +
Sbjct: 599 ERREGAGAPPRRSFGSDR 616


>gi|191168055|ref|ZP_03029855.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218555734|ref|YP_002388647.1| ATP-dependent RNA helicase DeaD [Escherichia coli IAI1]
 gi|260857291|ref|YP_003231182.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|260869914|ref|YP_003236316.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|293449499|ref|ZP_06663920.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|190901924|gb|EDV61673.1| cold-shock DEAD box protein A [Escherichia coli B7A]
 gi|218362502|emb|CAR00126.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|257755940|dbj|BAI27442.1| ATP-dependent RNA helicase DeaD [Escherichia coli O26:H11 str.
           11368]
 gi|257766270|dbj|BAI37765.1| ATP-dependent RNA helicase DeaD [Escherichia coli O111:H- str.
           11128]
 gi|291322589|gb|EFE62018.1| ATP-dependent RNA helicase DeaD [Escherichia coli B088]
 gi|323154376|gb|EFZ40577.1| cold-shock DEAD box protein A [Escherichia coli EPECa14]
 gi|323178875|gb|EFZ64451.1| cold-shock DEAD box protein A [Escherichia coli 1180]
 gi|323183117|gb|EFZ68515.1| cold-shock DEAD box protein A [Escherichia coli 1357]
          Length = 629

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEQ 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|38704144|ref|NP_312070.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367519|ref|NP_289738.2| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 EDL933]
 gi|168749243|ref|ZP_02774265.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754142|ref|ZP_02779149.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762127|ref|ZP_02787134.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769579|ref|ZP_02794586.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773172|ref|ZP_02798179.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781305|ref|ZP_02806312.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786046|ref|ZP_02811053.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|168797762|ref|ZP_02822769.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|195938382|ref|ZP_03083764.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806131|ref|ZP_03248468.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812019|ref|ZP_03253348.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818284|ref|ZP_03258604.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400297|ref|YP_002272633.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327948|ref|ZP_03444031.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795113|ref|YP_003079950.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           TW14359]
 gi|261228174|ref|ZP_05942455.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255030|ref|ZP_05947563.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284538|ref|YP_003501356.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|331684811|ref|ZP_08385403.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
 gi|32171494|sp|Q8XA87|DEAD_ECO57 RecName: Full=Cold-shock DEAD box protein A; AltName:
           Full=ATP-dependent RNA helicase deaD
 gi|187770756|gb|EDU34600.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016396|gb|EDU54518.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001016|gb|EDU70002.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358785|gb|EDU77204.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361392|gb|EDU79811.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367581|gb|EDU85997.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374042|gb|EDU92458.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC869]
 gi|189379846|gb|EDU98262.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str. EC508]
 gi|208725932|gb|EDZ75533.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733296|gb|EDZ81983.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738407|gb|EDZ86089.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161697|gb|ACI39130.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320315|gb|EEC28740.1| cold-shock DEAD box protein A [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594513|gb|ACT73874.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290764411|gb|ADD58372.1| Cold-shock DEAD-box protein A [Escherichia coli O55:H7 str. CB9615]
 gi|320189516|gb|EFW64175.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640234|gb|EFX09806.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           G5101]
 gi|320645531|gb|EFX14540.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str.
           493-89]
 gi|320650841|gb|EFX19298.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H- str. H
           2687]
 gi|320656222|gb|EFX24134.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661912|gb|EFX29320.1| ATP-dependent RNA helicase DeaD [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666747|gb|EFX33726.1| ATP-dependent RNA helicase DeaD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337864|gb|EGD61698.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1125]
 gi|326347433|gb|EGD71158.1| Cold-shock DEAD-box protein A [Escherichia coli O157:H7 str. 1044]
 gi|331078426|gb|EGI49632.1| ATP-dependent RNA helicase DeaD [Escherichia coli H299]
          Length = 629

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|260596208|ref|YP_003208779.1| ATP-dependent RNA helicase DeaD [Cronobacter turicensis z3032]
 gi|260215385|emb|CBA27415.1| Cold-shock DEAD box protein A [Cronobacter turicensis z3032]
          Length = 638

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 166/578 (28%), Positives = 267/578 (46%), Gaps = 47/578 (8%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETTFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L   +           AP  L +APTRELAVQV   +         V  V   GG  
Sbjct: 61  SLPLLHNID------DTLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  IVVGTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ 
Sbjct: 175 AQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+V  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--- 410
           R    + R   +++     P+ E + +R  ++          ++  +      LLAK   
Sbjct: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAK--VQQQLESSDLDQYRALLAKLQP 412

Query: 411 ---HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR--------------DRFRDDSRAF 453
               D E +AA  L++ +     P  + P + +  +              DR     R  
Sbjct: 413 EGELDVETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRFERRGDRNERGPRTE 470

Query: 454 KVGGGSRDNF------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
           + G G                + + VG     E R ++  +     I+ + IG I++   
Sbjct: 471 RSGAGEERPRRERREAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 530

Query: 508 LTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKP 541
            + +E+      + +    RT  L+K + ++ +G  +P
Sbjct: 531 HSTIELPKGMPTEVLQHFTRTRILNKPMNMQLMGDAQP 568


>gi|163738737|ref|ZP_02146151.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161388065|gb|EDQ12420.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 713

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 276/577 (47%), Positives = 364/577 (63%), Gaps = 21/577 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E +   + +AL  RGY +LT VQEA+   +L + D+LVSAQTGSGKTV FGLA+A TLL 
Sbjct: 13  EILKTALEQALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLG 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + ++   A  PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR L+ G
Sbjct: 73  DAEKLDRADLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERG 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVV TPGRL DHI    +N+S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR LM
Sbjct: 133 AHIVVATPGRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLM 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D +NA++N+LR+H +
Sbjct: 193 FSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHES 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            NAIVFC+TRA V+R T  L+   F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVA
Sbjct: 253 PNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLP L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL R A 
Sbjct: 313 ARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAK 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           ++    PAPS + +R RD +R+L D  + + +  +E   V  L+ +  PE++A  +LR+ 
Sbjct: 373 ITAETSPAPSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLF 432

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                APEE++        D+   + RA          F  S WF++S G K  AE R L
Sbjct: 433 HDRHSAPEELSD----PQHDKREREERAP---------FGPSVWFAVSGGRKAGAEPRRL 479

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLGGE-- 539
           +P LC + G+ +  IGAIRVQ D ++VEV     +     VK   L++G  +  L     
Sbjct: 480 LPALCNAGGLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPD 539

Query: 540 ---KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               P  +G    GF+          R  R     + 
Sbjct: 540 LPKSPRPQGRDGGGFRDDKRGHRGQDRGDRGGERGER 576


>gi|25511900|pir||AB0901 ATP-dependent RNA helicase (dead-box protein) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504348|emb|CAD07800.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139168|gb|AAO70736.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 646

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 274/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 437 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 614

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 615 RGDGRRFSGERRESRGPRRDDSTGRRR 641


>gi|315634792|ref|ZP_07890074.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
 gi|315476344|gb|EFU67094.1| ATP-dependent RNA helicase DeaD [Aggregatibacter segnis ATCC 33393]
          Length = 600

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 168/591 (28%), Positives = 285/591 (48%), Gaps = 27/591 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++  P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L + +
Sbjct: 7   TFKDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPILA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G+ +    GG     + R
Sbjct: 67  QIDPTE------KHPQLLVMAPTRELAIQVADACEQFVKYAKGINIVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+R   L+++ LKA+VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  +   DI      V    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGVRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +
Sbjct: 241 EVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNV 360

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                 ++     P+   ++A R +  +  +   L    ++   + + D+  A    E I
Sbjct: 361 EHLIKKNIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSW 468
           AA  + + +          P V   + RDR     R         +       + +    
Sbjct: 421 AAAMMMLLQGKQKLILPPDPVVDKKARRDRNERSDRRENPRSAERRGERKGYGSPQPMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG     E R ++  +     IN + IG I++  D + +E+      + +    +T
Sbjct: 481 YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFAKT 540

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKRFKGASKN 573
             L+K +++ ++G  K   RG  + G K +  +  D   K  ++FK  S  
Sbjct: 541 RVLNKQMRMSFIGEAK-GERGGDNFGGKRRGGRFEDKGFKGDRKFKEKSHR 590


>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase domain-containing protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
           DSM 20745]
          Length = 526

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 175/531 (32%), Positives = 271/531 (51%), Gaps = 33/531 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++   + + +A+   G+   T +Q   +   L  +D++  AQTG+GKT AF L +
Sbjct: 1   MEGFADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R      P AL +APTRELAVQV +    L       V    GG  + R+ 
Sbjct: 61  IERLQPNGRR------PQALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++   +VVGTPGR+ DHIR + L++S++  VV+DEADEMLD+GF +D+E+ILD  P 
Sbjct: 115 RALRHPVEVVVGTPGRVMDHIRRETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSATI   +  LA+ Y +D  RV +  E      I+   V V    +  A+  I
Sbjct: 175 ERQTALFSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+FC T+  V   T+ L    +   AL G+LSQ +R   +   R G+A + 
Sbjct: 235 LDMETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  VI+ ++  +PE+ +HR GRTGRAGR G ++ ++    +R    
Sbjct: 295 IATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLRE 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK----MVDVLLAKHDPE 414
           + R   V +     P+ E +  R  QR L      + I+ ++ +    +VD L A +DP 
Sbjct: 355 IERATGVRMTRRGVPTPEEVAAR--QRELLGESLAEVIEANDLEAAMMVVDELAAYYDPS 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +IAA  +R+                   RDR   +      GGGS +   G +   L++G
Sbjct: 413 EIAAAAIRMLM-----------------RDRGVAEQEEIPTGGGSTEA--GMARLFLNLG 453

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            K       ++  +   + I  +SIG I +    TFV+V    VD + + +
Sbjct: 454 RKDGIRPMDVVGAIANEARIPGKSIGQIEIMDRYTFVDVPEQVVDRVIQAL 504


>gi|301047996|ref|ZP_07195038.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
 gi|300300139|gb|EFJ56524.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 185-1]
          Length = 646

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 162/569 (28%), Positives = 260/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPA 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LVI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|16421839|gb|AAL22152.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248446|emb|CBG26283.1| ATP-dependent RNA helicase (dead-box protein) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|332990138|gb|AEF09121.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 646

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 273/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 437 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 614

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 615 RGDGRRFSGERRESRGPRRDDSTGRRR 641


>gi|91074155|gb|ABE09036.1| Cold-shock DEAD-box protein A [Escherichia coli UTI89]
          Length = 651

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 442 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 588


>gi|114705391|ref|ZP_01438299.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
 gi|114540176|gb|EAU43296.1| DEAD/DEAH box helicase [Fulvimarina pelagi HTCC2506]
          Length = 587

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 260/573 (45%), Positives = 352/573 (61%), Gaps = 9/573 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            + + +ALS+RGY  LT VQ A+L   L E+D+LVSAQTGSGKT+A+GLA+A TLL E +
Sbjct: 7   SKPLADALSQRGYTQLTDVQTAVLEEPLVERDLLVSAQTGSGKTIAYGLAMAGTLLGEAE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           RF PA  P+AL +APTRELA+QV  EL WLYA TG  +A  +GG+    ERR L +G HI
Sbjct: 67  RFGPADEPVALIVAPTRELAMQVTNELGWLYAGTGAKLATLVGGMDPRAERRRLGDGVHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL DH+    L I +LK +VLDEADEML+LGFR+D+EF+L ++P +RR L+FSA
Sbjct: 127 VVGTPGRLRDHLTRGALQIGNLKTLVLDEADEMLNLGFREDLEFLLQATPAERRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  + +NYQ++A R+ IA     H+DI+YRAV +A ++ ++A+ N+LR+    +A
Sbjct: 187 TLPKPIIQMTRNYQRNAHRIEIAKGQSGHADIEYRAVRIAPNEVEHAVTNVLRHAEQPSA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC+TR +V   +  L E  F  V LSGEL Q ER+ A+Q +RDGRARVC+ATDVAARG
Sbjct: 247 IVFCNTRETVRHLSSGLIERGFAAVTLSGELGQAERNQAIQALRDGRARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +DLP L LVIHA+L S+ E L HRSGRTGRAGRKG+SV ++P + +R+AERL  EA ++ 
Sbjct: 307 LDLPSLGLVIHADLPSDAETLQHRSGRTGRAGRKGVSVLLVPISRRRKAERLLAEARINA 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            W  APS + IR+ D  R++ DP+  +    ++      LL  H  E +AA F+R  RA 
Sbjct: 367 AWGAAPSADEIRQADEARLVADPVLAEPPSEEDAATAARLLESHSAEALAAAFVRQWRAR 426

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
           + +PE++   +        R   R  +      +    S WF + VG K  A+ +WL+P+
Sbjct: 427 MPSPEDVFDPNFGPDPKGGRSAERG-EGKPKKHERGGPSVWFHMDVGRKNNADPKWLLPL 485

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY-LGGEKPDFRGY 546
           LCR   I R  IGAIR+    T  E+S        R  ++  G  +   L    P     
Sbjct: 486 LCRRGKITRDDIGAIRIFDRETKFEISESVAKRFARDAEVSDGDDITITLADAAPGPDRK 545

Query: 547 KSSGFKSKNS-------QDGATKRFKRFKGASK 572
              G K             GA  R K  +   K
Sbjct: 546 GGKGPKPGGKPKFKKDFSSGAPSRGKPRQSKPK 578


>gi|115522860|ref|YP_779771.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115516807|gb|ABJ04791.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 694

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 285/584 (48%), Positives = 378/584 (64%), Gaps = 25/584 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  LL + +
Sbjct: 7   PPPLARALAERNYLEATPVQAAVLAPDAAGRDLLVSAQTGSGKTVAYGLAIARDLLGDVE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F+PA+APLAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+L  GAHI
Sbjct: 67  QFAPAAAPLALIVAPTRELALQVHRELGWLYRNAGARVVSCVGGMDPRREQRELAEGAHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL ++P+ RR L+FSA
Sbjct: 127 VVGTPGRLCDHLRRGRLDVSQLKAVVLDEADEMLDLGFREDMEFILKTTPETRRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+  AI TLAK YQ +A RV +A     H DI+YRA+ +A SD ++A+VN+LR+  + +A
Sbjct: 187 TLPRAIVTLAKTYQHNAFRVEVAGGEHGHVDIEYRAIRIAPSDVEHAVVNVLRFIESPSA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC+TR +V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATDVAARG
Sbjct: 247 IVFCNTRNAVNHLQTSLLERGFSVVALSGELTQNERTTALNSLRDGRARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           IDLP+L LV+HA+L ++PE + HRSGRTGRAG+KG+SV ++P   +RRAE L   A +  
Sbjct: 307 IDLPNLGLVVHADLPNDPEVMQHRSGRTGRAGKKGVSVLLVPPARRRRAETLLNLAGIDA 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           +W  AP  + IR  D QR++QD LF +    +++++   LLA+   E+IA    R++RA 
Sbjct: 367 IWGTAPQADEIRTLDQQRMMQDALFTEEASTEDQELARALLAERSGEEIAVALARLYRAR 426

Query: 428 LCAPEEI------------------TPVSLVSGRDRFRDDS--RAFKVGGGSRDNFKGSS 467
           L APE+I                   P +    RD    DS  R      G +       
Sbjct: 427 LPAPEDILDPGLAHARARDDRAAGKGPRAAREDRDYGPRDSAPRPRSAKAGQKHAMTDGV 486

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK- 526
           WF  ++G ++ AEARWL+PM+CR  GI+RQ+IGAIR+    T  E+S    +     +K 
Sbjct: 487 WFRAAIGKRKNAEARWLLPMICRRGGIDRQAIGAIRILDTSTEFEISQSAAEAFAAQIKR 546

Query: 527 --LDKGIQLKYLGGEKPDFRGYKSSGFKSK--NSQDGATKRFKR 566
              D  I+++ L G KP         FK    N  D   +R KR
Sbjct: 547 PDKDDNIRIEPLIGAKPLEPSNDKPAFKPHDGNKPDRDARRDKR 590


>gi|311277865|ref|YP_003940096.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747060|gb|ADO46812.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 643

 Score =  330 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 172/641 (26%), Positives = 279/641 (43%), Gaps = 77/641 (12%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLRMGFIEDVETIMAEIPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDTESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K   +    + 
Sbjct: 360 IERLMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRNLLTKLQPESAEGEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR-----------------DRFRDDSRAFK 454
           D E +AA  L++ +     P  + P + +  +                 DR     R  +
Sbjct: 420 DMETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPER 477

Query: 455 VGGGSRDNF----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
            G                + + VG     E R ++  +     I+ + IG I++    + 
Sbjct: 478 GGEDRPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHST 537

Query: 511 VEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKP------------------------- 541
           +E+      + +    RT  L+K + ++ LG  +P                         
Sbjct: 538 IELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRTDRGGERRGGARNGESRGFGGERR 597

Query: 542 --------DFRGYKSSGFKSKNSQD-GATKRFKRFKGASKN 573
                    F G +  G + +   D GA +  +R    S+ 
Sbjct: 598 EGGRGDGRRFSGERREGHRGQRRDDNGAPRAPRRDDNGSRR 638


>gi|163741552|ref|ZP_02148943.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385286|gb|EDQ09664.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 718

 Score =  330 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 276/577 (47%), Positives = 364/577 (63%), Gaps = 21/577 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E +   + +AL  RGY +LT VQEA+   +L + D+LVSAQTGSGKTV FGLA+A TLL 
Sbjct: 13  EILKTALEQALQARGYEHLTPVQEAVTAAELDQSDLLVSAQTGSGKTVGFGLAMAPTLLG 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + ++   A  PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR L+ G
Sbjct: 73  DAEKLDRADLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRALERG 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVV TPGRL DHI    +N+S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR LM
Sbjct: 133 AHIVVATPGRLRDHIMRGSINLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDRRTLM 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D +NA++N+LR+H +
Sbjct: 193 FSATVPTGIARLAETYLKDHQRIKTVAEASQHADIEYQMLAVAQRDVENAVINVLRFHES 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            NAIVFC+TRA V+R T  L+   F VVALSGELSQ ERSNALQ +RDGRARVC+ATDVA
Sbjct: 253 PNAIVFCNTRAVVNRMTTRLSNRGFSVVALSGELSQAERSNALQSLRDGRARVCVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLP L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL R A 
Sbjct: 313 ARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLLRSAK 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           ++    PAPS + +R RD +R+L D  + + +  +E   V  L+ +  PE++A  +LR+ 
Sbjct: 373 ITAETSPAPSADDVRTRDFERLLGDKAWSEPVSENETAPVAELVERFSPEQLAVAYLRLF 432

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                APEE++        D+   + RA          F  S WF++S G K  AE R L
Sbjct: 433 HDRHSAPEELSD----PQHDKREREERAP---------FGPSVWFAVSGGRKAGAEPRRL 479

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLGGE-- 539
           +P LC + G+ +  IGAIRVQ D ++VEV     +     VK   L++G  +  L     
Sbjct: 480 LPALCNAGGLTKDDIGAIRVQFDQSYVEVRESSAESFWGAVKHDGLEEGANVTRLDKAPD 539

Query: 540 ---KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               P  +G    GF+          R  R     + 
Sbjct: 540 LPKSPRPQGRDGGGFRDDKRGHRGQDRGDRGSERGER 576


>gi|315617245|gb|EFU97854.1| cold-shock DEAD box protein A [Escherichia coli 3431]
          Length = 632

 Score =  330 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 161/572 (28%), Positives = 261/572 (45%), Gaps = 39/572 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF-----------------RDDSRAFK 454
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRDDRGPRDRNDRGPRGDRED 477

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 478 RPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 537

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
                + +    RT  L+K + ++ LG  +P 
Sbjct: 538 KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH 569


>gi|222034881|emb|CAP77624.1| Cold-shock DEad box protein A [Escherichia coli LF82]
          Length = 645

 Score =  330 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 22  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 82  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 136 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 196 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 256 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 316 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 375

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 376 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLGKIQPTAEGEEL 435

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 436 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 493

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 494 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 553

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 554 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 582


>gi|52424550|ref|YP_087687.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306602|gb|AAU37102.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 613

 Score =  330 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 165/582 (28%), Positives = 274/582 (47%), Gaps = 21/582 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L L + +  E 
Sbjct: 13  LPEFILSAVSDMGFETPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLAQIDIEE 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E       GV +A   GG     + R L+ GA
Sbjct: 73  ------KHPQMLVMAPTRELAIQVAEACELFTKNAKGVHIATLYGGQRYDIQLRALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   LN+S LK +VLDEADEML +GF DD+E ++   P + +  +F
Sbjct: 127 QVVVGTPGRILDHIRRGTLNLSELKFIVLDEADEMLRMGFIDDVETVMAELPAQHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K +  D   V I S  R + DI      V    ++ A++  L      
Sbjct: 187 SATMPEPIRRITKRFMTDPQEVKIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVAA
Sbjct: 247 GAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R    
Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLSNIERLMKK 366

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P+ EA++ R  ++    +   L    ++     +  +     D E IAA  L 
Sbjct: 367 PIEEVDVPNHEALQARRREKFKAKITKQLEHHDLEQYRLLLEGLFTPDQDQEDIAAAMLM 426

Query: 423 IHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + +             E+         R    D             N +    + + VG 
Sbjct: 427 LLQGKQKLILPPEPPMEKRGRRERDDRRGERGDRRERRPEERRGYGNPQPMDLYRIEVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531
               + R ++  +     IN ++IG I++  + + VE+      + + +  +   L+K +
Sbjct: 487 ADGVDVRHIVGAIANEGDINSRNIGHIKLYDEYSTVELPQGMPKELLQVFGKARVLNKQM 546

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           ++ ++          +  G ++    +G  +  +RF      
Sbjct: 547 RMTFVSEAGETVGRERHEGRRNDRRDNGFRREERRFNDRGNR 588


>gi|39937062|ref|NP_949338.1| putative DEAD-box protein ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
 gi|39650919|emb|CAE29442.1| putative DEAD-box protein, ATP-independent RNA helicase
           [Rhodopseudomonas palustris CGA009]
          Length = 694

 Score =  330 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 282/585 (48%), Positives = 376/585 (64%), Gaps = 21/585 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F   P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  L
Sbjct: 5   TFPTSPPPLARALAERNYLQATPVQSAVLAPDTAGRDLLVSAQTGSGKTVAYGLAIAQDL 64

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L 
Sbjct: 65  LGDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELA 124

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR 
Sbjct: 125 DGAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRT 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A +D ++A+VN+LRY 
Sbjct: 185 LLFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYV 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATD
Sbjct: 245 ESPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + 
Sbjct: 305 VAARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGVSVLLVPPARRRRAELLLQL 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R
Sbjct: 365 AGIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALAR 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDS----------------RAFKVGGGSRDNFKGS 466
           + RA + APE+I        R R                     R+     G +    G 
Sbjct: 425 VVRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGG 484

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S+   D     +K
Sbjct: 485 VWFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIK 544

Query: 527 L---DKGIQLKYLGGEKPDFRGYKSSGFK--SKNSQDGATKRFKR 566
               D  I+++ L G KP      +   +  +    D  T+R KR
Sbjct: 545 RPDHDDNIRIEPLIGAKPIPPRDDNRPPRQDADRKPDRETRRAKR 589


>gi|62129424|gb|AAX67127.1| cysteine sulfinate desulfinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 651

 Score =  330 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 168/627 (26%), Positives = 273/627 (43%), Gaps = 64/627 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 442 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------- 552
             + +    RT  L+K + ++ LG   P            F G +  G +          
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGG 619

Query: 553 -------SKNSQDGATKRFKRFKGASK 572
                  S   ++    R     G  +
Sbjct: 620 RGDGRRFSGERRESRGPRRDDSTGRRR 646


>gi|83859788|ref|ZP_00953308.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852147|gb|EAP90001.1| hypothetical protein OA2633_07304 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 685

 Score =  330 bits (844), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 271/577 (46%), Positives = 363/577 (62%), Gaps = 10/577 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     IP  +  AL  +GY  LT VQ A+L  +   +D+LVSAQTGSGKTVAFG+A+A 
Sbjct: 1   MSFPNTIPSALVTALEAKGYETLTDVQNAVLTDEADGRDLLVSAQTGSGKTVAFGMAMAG 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLLA  DR   A APLAL IAPTRELA+QV REL+WLYA+ G  +A  +GG+    ERR 
Sbjct: 61  TLLAGEDRLPQAGAPLALIIAPTRELALQVQRELDWLYAEAGAKLASAVGGLDPRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRL DHI  K L++S+++A+ LDEADEMLD GFR+D+EFIL S+P++R
Sbjct: 121 LERGAHIVVGTPGRLRDHIERKALDLSNIRAIALDEADEMLDFGFREDLEFILGSAPEER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+S  I  +A+ YQ+DA+R++  S   QH+DI Y A  VA  DR+NA++N+LR
Sbjct: 181 RTLLFSATVSKEIARIAETYQRDALRISTLSATNQHADITYLAHTVAGHDRENAVINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YH A  A+VFC+TR +V+R    L    F  VALSGEL+Q ER+ ALQ +RDGRA VC+A
Sbjct: 241 YHAAPRALVFCATRDAVNRLAAKLHNRGFHAVALSGELTQAERTKALQALRDGRATVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LV+HAE  +N E+LLHRSGRTGRAG KG SVFV+  + + R  RL 
Sbjct: 301 TDVAARGIDLPGLDLVVHAEPPTNAESLLHRSGRTGRAGAKGTSVFVVASSRKGRVIRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           REA V   W  AP  + +RE+D +R+   P     +  D  + V  L+ +   EK+ A F
Sbjct: 361 REAKVQAEWVDAPDADLVREKDRERLGDHPALSQEVDEDRLEEVRELIERFGAEKLTAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L      + APEE++       R+      RA +     R++F    WF + +G KQ+AE
Sbjct: 421 LSELERRMPAPEELSGTPPERQRE-----ERADRGPRRGREDFDAGQWFEIDLGRKQRAE 475

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
            RWL+P++CR  GI    IGAIR+    T  +++ D +D     +    + DK +++   
Sbjct: 476 PRWLVPLICRVGGIVGNDIGAIRIGETATRFQIAEDKIDGFTEAMNQPRETDKNVRVTIA 535

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           G E P        G   +  +D    +     G ++ 
Sbjct: 536 GDE-PFETAGPGFGSGPRGDRDRGKPKRTPRPGKAER 571


>gi|293406774|ref|ZP_06650700.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298382514|ref|ZP_06992111.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300897926|ref|ZP_07116305.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
 gi|291426780|gb|EFE99812.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1412]
 gi|298277654|gb|EFI19170.1| ATP-dependent RNA helicase DeaD [Escherichia coli FVEC1302]
 gi|300358356|gb|EFJ74226.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 198-1]
          Length = 650

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|117625458|ref|YP_858781.1| ATP-dependent RNA helicase DeaD [Escherichia coli APEC O1]
 gi|209920639|ref|YP_002294723.1| ATP-dependent RNA helicase DeaD [Escherichia coli SE11]
 gi|227887886|ref|ZP_04005691.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|300817586|ref|ZP_07097802.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300904348|ref|ZP_07122201.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300918917|ref|ZP_07135476.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300926099|ref|ZP_07141917.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300948811|ref|ZP_07162879.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300955748|ref|ZP_07168093.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300977829|ref|ZP_07174069.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300990761|ref|ZP_07179333.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|301301782|ref|ZP_07207916.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|301326415|ref|ZP_07219769.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301644873|ref|ZP_07244845.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|606102|gb|AAA57965.1| two frameshifts relative to ECODEAD [Escherichia coli str. K-12
           substr. MG1655]
 gi|30042761|gb|AAP18484.1| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|56383827|gb|AAN44670.2| inducible ATP-independent RNA helicase [Shigella flexneri 2a str.
           301]
 gi|73857176|gb|AAZ89883.1| inducible ATP-independent RNA helicase [Shigella sonnei Ss046]
 gi|81247009|gb|ABB67717.1| inducible ATP-independent RNA helicase [Shigella boydii Sb227]
 gi|115514582|gb|ABJ02657.1| inducible ATP-independent RNA helicase [Escherichia coli APEC O1]
 gi|209913898|dbj|BAG78972.1| RNA helicase [Escherichia coli SE11]
 gi|227835282|gb|EEJ45748.1| ATP-dependent RNA helicase DeaD [Escherichia coli 83972]
 gi|281180206|dbj|BAI56536.1| RNA helicase [Escherichia coli SE15]
 gi|300308206|gb|EFJ62726.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 200-1]
 gi|300317381|gb|EFJ67165.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 175-1]
 gi|300403699|gb|EFJ87237.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 84-1]
 gi|300407069|gb|EFJ90607.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 45-1]
 gi|300413943|gb|EFJ97253.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 115-1]
 gi|300417864|gb|EFK01175.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 182-1]
 gi|300451700|gb|EFK15320.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 116-1]
 gi|300529884|gb|EFK50946.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 107-1]
 gi|300842763|gb|EFK70523.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 124-1]
 gi|300846904|gb|EFK74664.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 78-1]
 gi|301076818|gb|EFK91624.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 146-1]
 gi|315257088|gb|EFU37056.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 85-1]
 gi|315288936|gb|EFU48334.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 110-3]
 gi|315294907|gb|EFU54246.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 153-1]
 gi|315297886|gb|EFU57156.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 16-3]
 gi|324008761|gb|EGB77980.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 57-2]
 gi|324012112|gb|EGB81331.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 60-1]
 gi|324018314|gb|EGB87533.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 117-3]
          Length = 646

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|300929852|ref|ZP_07145298.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
 gi|300462214|gb|EFK25707.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 187-1]
          Length = 646

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|218706784|ref|YP_002414303.1| ATP-dependent RNA helicase DeaD [Escherichia coli UMN026]
 gi|218433881|emb|CAR14798.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|284923186|emb|CBG36280.1| ATP-dependent RNA helicase (DEAD-box protein) [Escherichia coli
           042]
          Length = 655

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 442 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 588


>gi|110807031|ref|YP_690551.1| ATP-dependent RNA helicase DeaD [Shigella flexneri 5 str. 8401]
 gi|157154820|ref|YP_001464636.1| ATP-dependent RNA helicase DeaD [Escherichia coli E24377A]
 gi|157162647|ref|YP_001459965.1| ATP-dependent RNA helicase DeaD [Escherichia coli HS]
 gi|187731310|ref|YP_001881921.1| ATP-dependent RNA helicase DeaD [Shigella boydii CDC 3083-94]
 gi|188491860|ref|ZP_02999130.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|237706085|ref|ZP_04536566.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|254038328|ref|ZP_04872386.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|293412537|ref|ZP_06655260.1| conserved hypothetical protein [Escherichia coli B354]
 gi|331643862|ref|ZP_08344993.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331648963|ref|ZP_08350051.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331674700|ref|ZP_08375459.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332280007|ref|ZP_08392420.1| cold-shock DEAD-box protein A [Shigella sp. D9]
 gi|26110171|gb|AAN82357.1|AE016767_117 Cold-shock DEAD-box protein A [Escherichia coli CFT073]
 gi|110616579|gb|ABF05246.1| inducible ATP-independent RNA helicase [Shigella flexneri 5 str.
           8401]
 gi|157068327|gb|ABV07582.1| cold-shock DEAD box protein A [Escherichia coli HS]
 gi|157076850|gb|ABV16558.1| cold-shock DEAD box protein A [Escherichia coli E24377A]
 gi|187428302|gb|ACD07576.1| cold-shock DEAD box protein A [Shigella boydii CDC 3083-94]
 gi|188487059|gb|EDU62162.1| cold-shock DEAD box protein A [Escherichia coli 53638]
 gi|226839952|gb|EEH71973.1| cold-shock DEAD-box protein A [Escherichia sp. 1_1_43]
 gi|226899125|gb|EEH85384.1| cold-shock DEAD-box protein A [Escherichia sp. 3_2_53FAA]
 gi|281602546|gb|ADA75530.1| Cold-shock DEAD-box protein A [Shigella flexneri 2002017]
 gi|291469308|gb|EFF11799.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492243|gb|ADE90999.1| cold-shock DEAD box protein A [Escherichia coli IHE3034]
 gi|331037333|gb|EGI09557.1| cold-shock DEAD-box protein A [Escherichia coli H736]
 gi|331042710|gb|EGI14852.1| cold-shock DEAD-box protein A [Escherichia coli M605]
 gi|331068139|gb|EGI39535.1| cold-shock DEAD-box protein A [Escherichia coli TA280]
 gi|332102359|gb|EGJ05705.1| cold-shock DEAD-box protein A [Shigella sp. D9]
          Length = 651

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 442 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 588


>gi|300823875|ref|ZP_07103999.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|309793740|ref|ZP_07688166.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
 gi|300523643|gb|EFK44712.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 119-7]
 gi|308122697|gb|EFO59959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 145-7]
          Length = 646

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEQ 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|12517770|gb|AAG58298.1|AE005544_12 inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. EDL933]
 gi|13363516|dbj|BAB37466.1| inducible ATP-independent RNA helicase [Escherichia coli O157:H7
           str. Sakai]
 gi|209758398|gb|ACI77511.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758400|gb|ACI77512.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758402|gb|ACI77513.1| inducible ATP-independent RNA helicase [Escherichia coli]
 gi|209758406|gb|ACI77515.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  329 bits (843), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|331679243|ref|ZP_08379915.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
 gi|331073308|gb|EGI44631.1| ATP-dependent RNA helicase DeaD [Escherichia coli H591]
          Length = 651

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEQ 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 442 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 588


>gi|331654768|ref|ZP_08355768.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
 gi|331048150|gb|EGI20227.1| cold-shock DEAD box protein A (ATP-dependent RNA helicasedeaD)
           [Escherichia coli M718]
          Length = 651

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 28  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 88  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 142 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 202 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 262 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 322 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 381

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 382 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 441

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 442 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 499

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 500 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 559

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 560 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 588


>gi|301022016|ref|ZP_07185959.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
 gi|300397731|gb|EFJ81269.1| ATP-dependent RNA helicase DeaD [Escherichia coli MS 69-1]
          Length = 646

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGYREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|262042721|ref|ZP_06015875.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039946|gb|EEW41063.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 634

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 162/570 (28%), Positives = 262/570 (45%), Gaps = 36/570 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 22  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 82  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 136 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 196 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 256 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 316 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 375

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 376 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 435

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEIT-------------PVSLVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  +  
Sbjct: 436 DVETLAAALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPK 495

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 496 R-ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 554

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
              + +    RT  L+K + ++ LG  +P 
Sbjct: 555 IPGEVLQHFTRTRILNKPMNMQLLGDAQPR 584


>gi|206579682|ref|YP_002236428.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288933410|ref|YP_003437469.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568740|gb|ACI10516.1| cold-shock DEAD box protein A [Klebsiella pneumoniae 342]
 gi|288888139|gb|ADC56457.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 643

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 161/570 (28%), Positives = 261/570 (45%), Gaps = 36/570 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEITPVS-------------LVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  +  
Sbjct: 420 DVETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDREDRPK 479

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 480 R-ERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG 538

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
              + +    RT  L+K + ++ +G  +P 
Sbjct: 539 MPGEVLQHFTRTRILNKPMNMQLMGDAQPR 568


>gi|296104876|ref|YP_003615022.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059335|gb|ADF64073.1| ATP-dependent RNA helicase DeaD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 631

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 162/576 (28%), Positives = 267/576 (46%), Gaps = 39/576 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  +        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPD------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 360 IERTMKLTIPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAG--LCAPEEIT-------------PVSLVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R+ + G
Sbjct: 420 DIETLAAALLKMAQGERTLIVPPDAPMRPRREFRDRDDRFERRGDRNDRGPRGDRSERGG 479

Query: 457 GGSRDNF----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                           + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 480 EDRPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE 539

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           +      + +    RT  L+K + ++ LG  +P   
Sbjct: 540 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPD 575


>gi|83944259|ref|ZP_00956714.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
 gi|83844803|gb|EAP82685.1| dead-box protein, ATP-independent rna helicase [Sulfitobacter sp.
           EE-36]
          Length = 731

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 287/574 (50%), Positives = 373/574 (64%), Gaps = 27/574 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++
Sbjct: 3   QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G VV  C+GG+    ERR L  GAHIV
Sbjct: 63  FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+S ++AVVLDEADEMLDLGFR+++EFIL  +P++RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S  ++P  M+ +A RL   A + V 
Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D    V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +      D              F  S WFS+S+G    AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPADERPRGD--------------FGPSVWFSISIGRNDDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLG------- 537
           CR   + +  +GAIRVQP  TFVE+ A   D         +K++ G  +  L        
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFTNALGPDMKVEDGAVVTKLDKAPDLSR 528

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           G KP  RG K +  +     D   +  +  +   
Sbjct: 529 GPKPGGRGPKPN--RGGPRSDNGPRPDRGPRPDR 560


>gi|193067315|ref|ZP_03048283.1| cold-shock DEAD box protein A [Escherichia coli E110019]
 gi|192959272|gb|EDV89707.1| cold-shock DEAD box protein A [Escherichia coli E110019]
          Length = 629

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAFHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|209758404|gb|ACI77514.1| inducible ATP-independent RNA helicase [Escherichia coli]
          Length = 646

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVATRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|83313160|ref|YP_423424.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82948001|dbj|BAE52865.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 622

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 269/588 (45%), Positives = 367/588 (62%), Gaps = 20/588 (3%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   P    + +AL+ER Y + T+VQEA+L P    +D+LVSAQTGSGKTVA+GLA+
Sbjct: 37  MDFF---PAGHPLLKALTERDYTDPTAVQEAVLEPGAAGRDLLVSAQTGSGKTVAYGLAI 93

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A TLL +     PA+ PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E+
Sbjct: 94  ADTLLGDAFVLEPAAEPLALIVAPTRELALQVHRELTWLYEHAGARVVSCVGGMDPRAEQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  GAHIVVGTPGRL DH+   GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P+
Sbjct: 154 RMLGQGAHIVVGTPGRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQ 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR L+FSAT+   I  +AK YQ++A R+ +++  + H+DI+YRAV VA ++ ++A+VN+
Sbjct: 214 ERRTLLFSATLPHGIVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LRY  +  A+VFC+TR SV     +L E  F  VALSGEL Q ER+NALQ +RDGRARVC
Sbjct: 274 LRYFESPTAMVFCNTRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVC 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGIDLP+L LVIHAEL  N + L HRSGRTGRAG+KG+SV ++  + +R+A+ 
Sbjct: 334 VATDVAARGIDLPNLGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADM 393

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L + A V  +W  APS E IR+ D +R+L  PL  +    D+  M   LLA+   E IAA
Sbjct: 394 LLQTAGVQAIWSGAPSAEDIRKLDQERLLTSPLLSEENTEDDLAMAKALLAERPAEDIAA 453

Query: 419 GFLRIHRAGLCAPEEI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             +R++R+ L A EE+    P +        R+        G       GS WF +++G 
Sbjct: 454 ALVRMYRSHLPAAEEVFDPGPGNPSREPREHREREPRPPREGKGPGLPGGSVWFRMNIGR 513

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           ++ A+ RWL+PM+CR   + +  IGAIR+    T  E+ A   D     ++  +  +++ 
Sbjct: 514 QKNADPRWLIPMICRQGKVTKAEIGAIRIFERETRFEIDAGHADRFATALRQIEKAEVRI 573

Query: 536 LG----------GEKPDFRGYKSSGFKSKNSQDG--ATKRFKRFKGAS 571
                         +PD R    +G K    +      K+    KG  
Sbjct: 574 ERLAEHAAEPAAAARPDDRPRPPAGVKPMGPKKAPWKDKKDGHRKGKP 621


>gi|83953300|ref|ZP_00962022.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
 gi|83842268|gb|EAP81436.1| dead-box protein, ATP-independent RNA helicase [Sulfitobacter sp.
           NAS-14.1]
          Length = 731

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 287/574 (50%), Positives = 373/574 (64%), Gaps = 27/574 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+ +GY +LT VQEA+ NPDL E D+LVSAQTGSGKTVAFGLA+A TLL ++++
Sbjct: 3   QTIADALATQGYDSLTPVQEAVTNPDLVEADLLVSAQTGSGKTVAFGLAIAPTLLGDDEK 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G VV  C+GG+    ERR L  GAHIV
Sbjct: 63  FGHAGAPLALIIAPTRELAMQVSRELTWLYGKAGAVVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+S ++AVVLDEADEMLDLGFR+++EFIL  +P++RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLSDIRAVVLDEADEMLDLGFREELEFILSEAPEERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRVETVGEKKQHADIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELV+HA+L SN + LLHRSGRTGRAGRKG+S  ++P  M+ +A RL   A + V 
Sbjct: 303 DLPNLELVVHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKMRSKANRLLGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D    V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAAGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +      D              F  S WFS+S+G    AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPADERPRGD--------------FGPSVWFSISIGRNDDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLG------- 537
           CR   + +  +GAIRVQP  TFVE+ A   D         +K++ G  +  L        
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSADKFINALGPDMKVEDGAVVTKLDKAPDLSR 528

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           G KP  RG K +  +     D   +  +  +   
Sbjct: 529 GPKPGGRGPKPN--RGGPRSDNGPRPDRGPRPDR 560


>gi|254450953|ref|ZP_05064390.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
 gi|198265359|gb|EDY89629.1| ATP-dependent rna helicase, dead/deah box family [Octadecabacter
           antarcticus 238]
          Length = 706

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 281/572 (49%), Positives = 369/572 (64%), Gaps = 23/572 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +A+  RGY  LT VQEA  +P L  +D+LVSAQTGSGKT+ FG+A+A  LL + +R
Sbjct: 3   QALADAIEARGYDTLTPVQEACGDPALEGRDLLVSAQTGSGKTLGFGIAIAPNLLGDAER 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV RELEWLY KTG V+A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FDRADAPLALVIAPTRELALQVKRELEWLYEKTGAVIASTVGGMDMRDERRALGRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI  K +++S+LKAVVLDEADEMLDLGFR+D+EFILD SPK R+ L+FSAT
Sbjct: 123 VSTPGRLRDHIMRKSIDLSNLKAVVLDEADEMLDLGFREDLEFILDESPKDRQTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  +I  LA+ YQ++A RV   +  +QH+DI+YRA  V+  D +NAI+N+LRY  A NAI
Sbjct: 183 VPASIAKLAQRYQRNAERVATTTGEKQHADIEYRAFRVSARDTENAIINVLRYFEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELSQTERTHALQSMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHAEL +N + LLHRSGRTGRAGRKG S  ++P  ++++AERL   A ++  
Sbjct: 303 DLPNLDLVIHAELPTNQDTLLHRSGRTGRAGRKGTSAMIVPPAVRKKAERLLGWAKLTAT 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  +D +R+L+D  +   ++     MV  +  +  PE++AA +LR++R   
Sbjct: 363 WADAPSADEVTAKDEERMLEDTDWSADVEESATAMVATMAERFAPEQLAAAYLRLYREKH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++ V   +                  R  F  S WFSL  G    AE R ++PM+
Sbjct: 423 TAPEELSDVGEPA----------------KPRQAFGPSVWFSLPGGRDAGAEPRRILPMI 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFR 544
           C+   I +  IGAIR+QPD +++EV    V  L       + L+ G  L  +       R
Sbjct: 467 CKMGNITKDDIGAIRIQPDTSYIEVREASVKTLTAALGSDMTLENGAPLTRVANPPSFER 526

Query: 545 GYKSSGFKSK---NSQDGATKRFKRFKGASKN 573
           G      K +       G        K   KN
Sbjct: 527 GPARKESKPRYDGPKSGGKPDYKSGDKPDYKN 558


>gi|152972086|ref|YP_001337232.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956935|gb|ABR78965.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 643

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 162/570 (28%), Positives = 262/570 (45%), Gaps = 36/570 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEIT-------------PVSLVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  +  
Sbjct: 420 DVETLAAALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPK 479

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 480 R-ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 538

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
              + +    RT  L+K + ++ LG  +P 
Sbjct: 539 MPGEVLQHFTRTRILNKPMNMQLLGDAQPR 568


>gi|212709939|ref|ZP_03318067.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
 gi|212687451|gb|EEB46979.1| hypothetical protein PROVALCAL_00989 [Providencia alcalifaciens DSM
           30120]
          Length = 657

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 160/565 (28%), Positives = 261/565 (46%), Gaps = 38/565 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  ALS+ GY   + +Q+  +   L   DVL  AQTGSGKT AF L L   + A+ 
Sbjct: 14  LSASILNALSDLGYEKPSPIQQQCIPLLLDGNDVLGMAQTGSGKTAAFSLPLLHNIDAD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   +         V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + KD   + I +      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAETLERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
           ++     P  + + +R   +  +       ++  +      LLAK  P      E +AA 
Sbjct: 368 TIPEVELPDADLLSQRRQAKFAEQ--IQQQLESSDLDQYRSLLAKMSPSEDVDMETLAAA 425

Query: 420 FLRIHRA-------------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            L++ +                                  S  + F    R  +     R
Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRGNDRRDRNSNGNGFDRAERGDRGARRER 485

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG     E R ++  +   + I+ + IG I++    + +E+     AD
Sbjct: 486 RDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMPAD 545

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKP 541
            +  L R   L+K  Q++ +G  +P
Sbjct: 546 VLTHLSRARILNKPTQMQLIGDAQP 570


>gi|295097653|emb|CBK86743.1| ATP-dependent RNA helicase CsdA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 631

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 162/576 (28%), Positives = 265/576 (46%), Gaps = 39/576 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  +        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPD------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 360 IERTMKLTIPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEITPVS-------------LVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  + G
Sbjct: 420 DMETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERGG 479

Query: 457 GGSRDNF----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                           + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 480 EDRPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIE 539

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           +      + +    RT  L+K + ++ LG  +P   
Sbjct: 540 LPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPD 575


>gi|161950038|ref|YP_404825.2| ATP-dependent RNA helicase DeaD [Shigella dysenteriae Sd197]
 gi|309785489|ref|ZP_07680120.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
 gi|308926609|gb|EFP72085.1| cold-shock DEAD box protein A [Shigella dysenteriae 1617]
          Length = 629

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 566


>gi|161506153|ref|YP_001573265.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867500|gb|ABX24123.1| hypothetical protein SARI_04344 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 649

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 165/566 (29%), Positives = 265/566 (46%), Gaps = 33/566 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIKPSAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF-------- 463
           D E +AA  L++ +     P  + P + +  +  FRD         G R +         
Sbjct: 437 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRGPRGDREDRPRRER 494

Query: 464 ---KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
                   + + VG     E R ++  +     I+ + IG I++    + +E+      +
Sbjct: 495 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE 554

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPD 542
            +    RT  L+K + ++ LG  +P 
Sbjct: 555 VLQHFTRTRILNKPMNMQLLGDAQPH 580


>gi|156935688|ref|YP_001439604.1| ATP-dependent RNA helicase DeaD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533942|gb|ABU78768.1| hypothetical protein ESA_03554 [Cronobacter sakazakii ATCC BAA-894]
          Length = 635

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 167/631 (26%), Positives = 278/631 (44%), Gaps = 66/631 (10%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  FE       +   I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF
Sbjct: 1   MAEFETTFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVS 113
            L L   +           AP  L +APTRELAVQV   +         V  V   GG  
Sbjct: 61  SLPLLHNID------ETLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQR 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + R L+ G  IVVGTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+
Sbjct: 115 YDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVETIM 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P + +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ 
Sbjct: 175 AQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNE 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+V  L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DG
Sbjct: 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDG 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA--- 409
           R    + R   +++     P+ E + +R  ++   +    L+S   D+ + +   L    
Sbjct: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLTKLQPEG 414

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR------------------DRFRDDSR 451
           + D E +AA  L++ +     P  + P + +  +                     R D  
Sbjct: 415 ELDVETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRN 472

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                   R +      + + VG     E R ++  +     I+ + IG I++    + +
Sbjct: 473 GEDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI 532

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS------------------- 548
           E+      + +    RT  L+K + ++ +G  +P                          
Sbjct: 533 ELPKGMPTEVLQHFTRTRILNKPMNMQLMGDAQPRGDRRPGGGGRGFGGERREGGRGEGR 592

Query: 549 ------SGFKSKNSQDGATKRFKRFKGASKN 573
                 SG + +  +     R +  +   ++
Sbjct: 593 GEGRRFSGERREGGRSFGGDRREGGRSPRRD 623


>gi|290511539|ref|ZP_06550908.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
 gi|289776532|gb|EFD84531.1| ATP-dependent RNA helicase DeaD [Klebsiella sp. 1_1_55]
          Length = 659

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 161/570 (28%), Positives = 261/570 (45%), Gaps = 36/570 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 22  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 82  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 136 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 196 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 256 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 316 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 375

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 376 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 435

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEITPVS-------------LVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  +  
Sbjct: 436 DVETLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDREDRPK 495

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 496 R-ERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKG 554

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
              + +    RT  L+K + ++ +G  +P 
Sbjct: 555 MPGEVLQHFTRTRILNKPMNMQLMGDAQPR 584


>gi|332994521|gb|AEF04576.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 588

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 163/588 (27%), Positives = 272/588 (46%), Gaps = 35/588 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++  P+ I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + +
Sbjct: 8   TFKDLKLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLA 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  E  +      P  L +APTRELA+QV    +   + +  +  +   GG S   + R
Sbjct: 68  NIDPEQRK------PQLLVLAPTRELAIQVAEAFQVYASFSHKIKVLPVYGGQSYDNQIR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGR+ DHI+ K L++S LK +VLDEADEML +GF DD+E IL  +P +
Sbjct: 122 QLKRGVQVVVGTPGRVIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPAE 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+   I  + + Y KD   V IAS+    S I  R   VA   +  A+  I+
Sbjct: 182 RQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQVAPHHKLEALTRIM 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +       L+   + V  L+G++ Q  R   +  ++ G   + +
Sbjct: 242 EVERFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQNARERTVDKLKQGNIDILV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  I    +R    +
Sbjct: 302 ATDVVARGLDVERVSHVINYDVPYDSESYVHRIGRTGRAGRTGDAILFISHREKRMLFSI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK------MVDVLLAKHDP 413
            +     +   P PS+  I E    R  Q  +  D+ Q D  +       +    A+  P
Sbjct: 362 EKTTKQPIEVMPIPSISEINETRLSRFKQSVI--DATQDDSIETLIPLVEMIKEEAEASP 419

Query: 414 EKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGS 459
           E + A  L+I +    L   E   P          R+              R  +     
Sbjct: 420 EVLMAALLKIAQGDEPLILKESDRPDLHSKPPRDSREPRGDRRDGGRDGRERKPRAPRTG 479

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
           R    G   F + VG    A+   ++  +     ++ + IGAI +  + + V++      
Sbjct: 480 RKPEAGMQRFRIDVGHTHGAKPGNIVGAIANEGNMDSKHIGAIEIYDNFSTVDLPEGMPK 539

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
           +  D L+ T    + + ++      P  R    +  ++++  + A ++
Sbjct: 540 ETKDKLQGTRVAGQRLSIREWSDTPPAKRERGDNRGENRSRDNRARRK 587


>gi|261342608|ref|ZP_05970466.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
 gi|288315255|gb|EFC54193.1| cold-shock DEAD box protein A [Enterobacter cancerogenus ATCC
           35316]
          Length = 629

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 161/574 (28%), Positives = 264/574 (45%), Gaps = 39/574 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  +        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  HNIDPD------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 360 IERTMKLTIPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAG--LCAPEEITPVS-------------LVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  + G
Sbjct: 420 DIETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERGG 479

Query: 457 GGSRDNF----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                           + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 480 EDRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIE 539

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +      + +    RT  L+K + ++ +G  +P 
Sbjct: 540 LPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQPR 573


>gi|238896669|ref|YP_002921414.1| ATP-dependent RNA helicase DeaD [Klebsiella pneumoniae NTUH-K2044]
 gi|329997852|ref|ZP_08302922.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
 gi|238548996|dbj|BAH65347.1| cold-shock DeaD box ATP-dependent RNA helicase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328538887|gb|EGF64951.1| cold-shock DEAD-box protein A [Klebsiella sp. MS 92-3]
          Length = 659

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 162/570 (28%), Positives = 262/570 (45%), Gaps = 36/570 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 22  TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 82  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 136 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI           ++ A+V  
Sbjct: 196 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRF 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 256 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 316 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 375

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 376 IERTMKLTIPEVELPNAELLSKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEEL 435

Query: 412 DPEKIAAGFLRIHRA--GLCAPEEIT-------------PVSLVSGRDRFRDDSRAFKVG 456
           D E +AA  L++ +    L  P +                       DR     R  +  
Sbjct: 436 DVETLAAALLKMAQGERSLIVPPDAPMRPRREFRDRDDRFDRRGDRNDRGPRGDREDRPK 495

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG I++    + +E+   
Sbjct: 496 R-ERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG 554

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
              + +    RT  L+K + ++ LG  +P 
Sbjct: 555 MPGEVLQHFTRTRILNKPMNMQLLGDAQPR 584


>gi|294851527|ref|ZP_06792200.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
 gi|294820116|gb|EFG37115.1| ATP-dependent RNA helicase DeaD [Brucella sp. NVSL 07-0026]
          Length = 626

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 271/600 (45%), Positives = 381/600 (63%), Gaps = 36/600 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+V+ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVRNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAP++ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPNIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D  R++V
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV 540

Query: 526 KLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
             ++G   K L                   G  KP    +K  GF+  +  D   + F R
Sbjct: 541 -AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 598


>gi|283788210|ref|YP_003368075.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
 gi|282951664|emb|CBG91364.1| ATP-dependent RNA helicase (DEAD-box protein) [Citrobacter
           rodentium ICC168]
          Length = 626

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 159/569 (27%), Positives = 265/569 (46%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPVLEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 420 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 537

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ +G  +P 
Sbjct: 538 PGEVLQHFTRTRILNKPMNMQLVGDAQPH 566


>gi|192292890|ref|YP_001993495.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192286639|gb|ACF03020.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 691

 Score =  327 bits (838), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 281/585 (48%), Positives = 375/585 (64%), Gaps = 21/585 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F   P  +  AL+ER Y+  T VQ A+L PD   +D+LVSAQTGSGKTVA+GLA+A  L
Sbjct: 2   TFPTSPPPLARALAERNYLQATPVQSAVLAPDTTGRDLLVSAQTGSGKTVAYGLAIARDL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L 
Sbjct: 62  LGDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGGRIVSCVGGMDPRREQRELA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR 
Sbjct: 122 DGAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A +D ++A+VN+LRY 
Sbjct: 182 LLFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPNDVEHAVVNVLRYV 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATD
Sbjct: 242 ESPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + 
Sbjct: 302 VAARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R
Sbjct: 362 AGIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALAR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDS----------------RAFKVGGGSRDNFKGS 466
           + RA + APE+I        R R                     R+     G +    G 
Sbjct: 422 MVRARMPAPEDILDPGERPARGRDERPGKTAREPRDHEARDKAPRSRSAKAGEKHAITGG 481

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S+   D     +K
Sbjct: 482 VWFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISSAAADAFAAQIK 541

Query: 527 L---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKR 566
               D  I+++ L G KP      +   +    +  D   +R KR
Sbjct: 542 RPDHDDNIRIEPLIGAKPIPPRDDNRPPRPDADRKPDREARRAKR 586


>gi|291086515|ref|ZP_06356033.2| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
 gi|291067655|gb|EFE05764.1| ATP-dependent RNA helicase DeaD [Citrobacter youngae ATCC 29220]
          Length = 658

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 264/569 (46%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAQIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DMETLAAALLKMAQGERSL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             D +    RT  L+K + ++ +G   P 
Sbjct: 555 PGDVLQHFTRTRILNKPMNMQLVGDAVPH 583


>gi|163797256|ref|ZP_02191210.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
 gi|159177551|gb|EDP62105.1| putative cold-shock DEAD-box protein A (ATP-dependent RNA helicase
           DEAD) [alpha proteobacterium BAL199]
          Length = 575

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 284/561 (50%), Positives = 380/561 (67%), Gaps = 20/561 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  FEN    +  AL+ +GY   T VQ ++L P++   D+LVSAQTGSGKTVAFGLA+A 
Sbjct: 1   MNAFENAHPALAGALAAQGYETPTPVQASVLAPEVSSADLLVSAQTGSGKTVAFGLAIAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL E +RF  A  PLAL +APTRELA+QV REL+WLYA TG   A C+GG+ + RER  
Sbjct: 61  TLLEEAERFGRAEEPLALVVAPTRELALQVRRELDWLYAPTGARTASCVGGMDMRRERDV 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+V+GTPGRL DHI    L++S ++AVVLDEADEMLDLGFR+D+E+ILD++P  R
Sbjct: 121 LSSGAHLVIGTPGRLRDHIERGSLDLSKIRAVVLDEADEMLDLGFREDLEYILDAAPSDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK YQ++AVR+  A E  QH DI+YRA LVA +DRDNAIVN L 
Sbjct: 181 RTLMFSATVPSTIAHLAKRYQRNAVRLATAGERTQHHDIEYRAHLVAPNDRDNAIVNTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +H A++A+VFC TR +V   +  LA   F VVALSGELSQ ER++ALQ +RDGRARVC+A
Sbjct: 241 FHDARSAMVFCGTRIAVQHLSSRLANRGFSVVALSGELSQNERTHALQAIRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LV+HA++ +N + LLHRSGRTGRAGRKG+SV ++P   +   +RL 
Sbjct: 301 TDVAARGIDLPTLDLVVHADVPNNSDTLLHRSGRTGRAGRKGVSVLIVPHTRRHTVQRLL 360

Query: 361 REA-NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           + A N+   W   P+ EAI +RD +R++QDP+  + +  +E +    LLA HDPEK+AA 
Sbjct: 361 KSANNLRAAWMAPPNAEAIAKRDRERMMQDPVLSEDVTPEELEFARELLATHDPEKVAAA 420

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           +LR+H+A   APEE+  V+  S            +    +RD+F GS WF +S G K +A
Sbjct: 421 YLRLHQASRPAPEELLDVASASS-----------EPPRKARDDFAGSVWFKVSAGRKHQA 469

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKY 535
           EARWL+P++CR+  + +  +GAIR+ P+ + VE++A         +      ++ + +  
Sbjct: 470 EARWLLPLICRAGHVTKNEVGAIRILPNESHVEITASVAVRFAAAIAEAGTGEESVTITR 529

Query: 536 LGGEKPDF----RGYKSSGFK 552
           L G         R  + SG K
Sbjct: 530 LDGPPAPADAVSRPARPSGPK 550


>gi|85708865|ref|ZP_01039931.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
 gi|85690399|gb|EAQ30402.1| cold-shock dead-box protein A [Erythrobacter sp. NAP1]
          Length = 598

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 265/574 (46%), Positives = 359/574 (62%), Gaps = 12/574 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE +P  IGEAL+ERGY   T VQ A + PD   +D++VSAQTGSGKTVAFG+ALA  +
Sbjct: 2   SFEILPPAIGEALAERGYSEPTPVQAAAMAPDSAGRDLIVSAQTGSGKTVAFGIALAQDI 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +         PL LAIAPTRELA+QV REL WLYAK G+ +A C+GG+   +ERR L+
Sbjct: 62  LDQISGTPLQERPLVLAIAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALR 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E ILD++P  RR 
Sbjct: 122 SGPAIVVGTPGRLRDHLERGALDLSGLIGVVLDEADEMLDMGFREDLEEILDATPDTRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  AI  LA+ YQ DA+R+++  ++R H DI+Y+A+ VA S+ +NA+VN+LR+H
Sbjct: 182 LLFSATMPQAIVRLAQKYQSDALRLSLGGKDRGHGDIEYQAITVAPSEIENAVVNLLRFH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A++AI FC+TR SV R    L    F VV+LSGE SQ ER+ ALQ MRD RARVC+ATD
Sbjct: 242 EAESAICFCATRESVRRLHSALQNRGFGVVSLSGENSQSERNQALQAMRDRRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP L LVIH E   + E L HRSGRTGRAG+KG +  ++P N +RR + +   
Sbjct: 302 VAARGIDLPTLSLVIHVETPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVDAMLNG 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W  APS EAIR++D  R+++        + D++ +   LLA+  PE IAA  ++
Sbjct: 362 AKIKAQWLDAPSPEAIRKKDHARLMEKLTQPAEYEADDRAIASELLARMSPEDIAAALVK 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            HRA L  PEE+   +  +     ++  R           F+ + WF + VG +  AE R
Sbjct: 422 AHRAELPEPEEMLANTPEAREKAKKERQRPG---------FEDTVWFKIGVGRRHNAEPR 472

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLGGE 539
           WL+P++CR   I R  IGAIRV  + ++ ++          T++    DK  Q   L  E
Sbjct: 473 WLLPLICRRGHITRNEIGAIRVGQNESWFQIPRPIAAKFADTLEQTFSDKDDQDAILIEE 532

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             +    ++   +  +S     K F + K AS  
Sbjct: 533 SAEGPRIEARNNRKNHSGKPFVKPFGKGKNASPR 566


>gi|259418800|ref|ZP_05742717.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
 gi|259345022|gb|EEW56876.1| ATP-dependent rna helicase, dead/deah box family [Silicibacter sp.
           TrichCH4B]
          Length = 681

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 278/600 (46%), Positives = 385/600 (64%), Gaps = 47/600 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +AL  RGY +LT VQEA+ +P+L   D+LVSAQTGSGKTV FGLA+A T+L E+ +
Sbjct: 3   PTLQQALERRGYTSLTPVQEAVSDPELAGADLLVSAQTGSGKTVGFGLAIAPTILNEDGQ 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A++PLAL IAPTRELA+QV REL WLY   G V+A C+GG+ +  ERR L+ GAHIV
Sbjct: 63  FERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R+ L+FSAT
Sbjct: 123 VATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +S  I  LA+ YQ DA R++  +++ QHSDI Y + +VA  D +NAI+N+LR+H A NAI
Sbjct: 183 VSKPIAALAQTYQNDAQRISTINKSEQHSDISYFSHVVAPHDIENAIINVLRFHEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA+V+R    L+   FQVVALSGELSQ ER+ ALQ MRDGRAR+C+ATDVAARGI
Sbjct: 243 VFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S  ++     R+AERL R+A +S  
Sbjct: 303 DLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLRDAKLSAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +R RD +R+L D ++ +     +++ +  L+    PE++AAG+LR+  A  
Sbjct: 363 WVDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGYLRLWSAAR 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+T V+ +  R +  D +            F  S WF++  G    A+ R L+PML
Sbjct: 423 SAPEELTDVAAMDTRKKKEDRA-----------PFGPSVWFAIEGGRDAGADPRRLLPML 471

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGE----- 539
           C++ GI++ +IGAIR+  D ++ E++ D V+    T    + LD G  L+ L        
Sbjct: 472 CKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGDMALDDGSALERLNEAPNLPE 531

Query: 540 --KP----------------DFRGYKSSG---------FKSKNSQDGATKRFKRFKGASK 572
             KP                 ++G +  G         ++ ++  D A +  K      +
Sbjct: 532 RSKPPFRKGGGRGGFGGGKPGYKGERKGGGDYSSDRKPYRGRDRDDAADRPVKPRPAKPR 591


>gi|81242624|gb|ABB63334.1| inducible ATP-independent RNA helicase [Shigella dysenteriae Sd197]
          Length = 646

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 161/569 (28%), Positives = 261/569 (45%), Gaps = 36/569 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGQQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P + +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-- 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+    
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM 554

Query: 516 --DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
             + +    RT  L+K + ++ LG  +P 
Sbjct: 555 PGEVLQHFTRTRILNKPMNMQLLGDAQPH 583


>gi|294012703|ref|YP_003546163.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292676033|dbj|BAI97551.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 576

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 261/573 (45%), Positives = 358/573 (62%), Gaps = 18/573 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE++P ++  AL+ +GY +LT VQ  +  P+   +D++VSAQTGSGKTVAFGLA+A  L
Sbjct: 2   SFEHLPPLLSGALTRKGYESLTPVQAQVTQPEAEGRDLIVSAQTGSGKTVAFGLAMAKEL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +  R      PLALAIAPTRELA+QV RELEWLY +    +A C+GG+   +ERR L 
Sbjct: 62  LGDASRLPAPGLPLALAIAPTRELALQVARELEWLYGEARARIATCVGGMDAAKERRALA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAHIVVGTPGRL DH+    L++S LK VVLDEADEMLD+GFR+D+E ILD +P+ RR 
Sbjct: 122 HGAHIVVGTPGRLRDHLERGALDLSGLKTVVLDEADEMLDMGFREDLEEILDGAPEGRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQKDA+R++  S+ R H DI Y+AV VA +D +NA+VN+LRYH
Sbjct: 182 LLFSATMPKPIVALAKRYQKDALRISTVSDERGHGDISYQAVTVAPADIENAVVNLLRYH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AI+FC+TR +V      L E  F  VALSGE SQ ER++ALQ +RD RARVC+ATD
Sbjct: 242 EAETAILFCATRDNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDRRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R 
Sbjct: 302 VAARGIDLPNLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRG 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A + V W   PS EAI+E+D  R+ +  +    +   +  +   LL     ++IAA  ++
Sbjct: 362 AKIPVEWGTPPSKEAIQEQDNARLREKLMERADLDEQDWALGAELLEAKSAKEIAAMLVK 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
             RA L APEE+   S    R              G R  F+ + WF + +G +Q A+ R
Sbjct: 422 SARAALPAPEELLDASEAPQRRD------------GPRPGFEDTVWFRMDIGRRQNADPR 469

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL-----DKGIQLKYLG 537
           W++P++CR   ++RQ IGAIR+  + T  E+ +  V     +VK      D+G  + +  
Sbjct: 470 WILPLICRRGHVSRQDIGAIRIAANETLFEIPSAIVSRFMGSVKRTGEANDEGADIAFEQ 529

Query: 538 GE-KPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
            E  P     ++   K + +  G        + 
Sbjct: 530 VEGTPREAARENRHGKGRPNDRGPRPPAHSPRP 562


>gi|332289496|ref|YP_004420348.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
 gi|330432392|gb|AEC17451.1| ATP-dependent RNA helicase DeaD [Gallibacterium anatis UMN179]
          Length = 590

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 174/592 (29%), Positives = 283/592 (47%), Gaps = 31/592 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +  A+S+ G++N + +Q+A +   L  +DVL  AQTGSGKT AF L L S
Sbjct: 2   TFADLGLPENLLSAISDLGFINPSPIQQACIPHLLNGEDVLGMAQTGSGKTAAFALPLLS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  +         P  L +APTRELA+QV    E       G+ +    GG     + R
Sbjct: 62  KIDLDK------KYPQLLVMAPTRELAIQVADACEQFAKNLKGINIVTVYGGQRYDIQLR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR K L++S LKA+VLDEADEML +GF +D+E ++   P+ 
Sbjct: 116 ALKQGAQVVVGTPGRILDHIRRKTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPES 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + ++   + I S  +   DI      V    +  A+V  L
Sbjct: 176 HQTALFSATMPEPIRRITRRFMREPQEIKIQSTQQTAPDITQSYWFVNGFKKSEALVRFL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF  T+   +  T +L  + F+  AL+G+++QQ R   L  +R+GR  + +
Sbjct: 236 EVEEFDAAIVFTRTKTGTTEVTDLLERNGFRCAALNGDMTQQLREQTLDKLRNGRLDIVV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  +PE+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 296 ATDVAARGIDIDRISLVVNYDIPLDPESYVHRIGRTGRAGRAGRALLFVEAREKRLLRNI 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R    +V     P+ E +++    +  Q     L    +      + D+  A    E I
Sbjct: 356 ERLMKKTVDEVQIPNHEQLQQVRRDKFRQRITAQLEHHDLDQYRSLLEDIFAADQSQEDI 415

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKV--GGGSRDNFKGSSWFS 470
           AA  + + +      L    EI P    + RDR   + +            N      + 
Sbjct: 416 AAAMMMLLQGKQKLILPPDPEIKPARRENRRDRADRERKENPRSAERRGVRNELPMDLYR 475

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVK 526
           + VG     E   ++  +     I+ + IG I++      VE+  +     +   +RT  
Sbjct: 476 IEVGRADGVEVGHIVGAIANEGNISSRYIGHIKLYDHYATVELPVEMPKPLLQHFQRTYV 535

Query: 527 LDKGIQLKYL--------GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
           + K +++  L        G   P  +G +   F +K S  G  ++FK  +  
Sbjct: 536 VGKPMKMSLLEMAKNSDEGKHSPRKKGREGESF-TKRSHSGKERKFKENRKK 586


>gi|315126148|ref|YP_004068151.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
 gi|315014662|gb|ADT68000.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           sp. SM9913]
          Length = 607

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 164/601 (27%), Positives = 273/601 (45%), Gaps = 37/601 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L +
Sbjct: 6   TFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLN 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L + PTRELA+QV    E     T  V  +   GG S   +  
Sbjct: 66  NIDPS------VKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLS 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I+V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++
Sbjct: 120 ALRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPRE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++  +FSAT+   I  ++  Y  +  +V+I++ N   S ++      A   ++ AIV  L
Sbjct: 180 KQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQ-VFWNAHVHKNKAIVRFL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  TR    +  ++L    F    L+G+++QQ R   +  ++ G   V I
Sbjct: 239 EAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + +
Sbjct: 299 ATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA---KHDPEK 415
            R     +     P+ + + E+    + +   L L++        V   +A   +  PE 
Sbjct: 359 IRHTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPED 418

Query: 416 IAAGFL--------------RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSR 460
           +A   L              +I         +  P S   GR   R   RA +     + 
Sbjct: 419 LAGALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERGGERAERKPRERNS 478

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
            +      + + VG +   + + ++  +   + I+ + IG IR+    + V++      D
Sbjct: 479 RDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKD 538

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKP----DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            +D  ++     + + +     + P      R  + +G K ++      +  KR     +
Sbjct: 539 VLDHFQKVFICKRPMGMTLTQDQGPSEPRGERSERPAGDKKRSFNKDGQRPDKRSGPRKE 598

Query: 573 N 573
            
Sbjct: 599 R 599


>gi|290473453|ref|YP_003466320.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
 gi|289172753|emb|CBJ79524.1| cold-shock DeaD box ATP-dependent RNA helicase [Xenorhabdus
           bovienii SS-2004]
          Length = 662

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 162/570 (28%), Positives = 264/570 (46%), Gaps = 41/570 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL + GY   + +Q+  +   L  +DVL  AQTGSGKT AF L L   + AE 
Sbjct: 14  LSAPILAALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNIDAE- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV         +   V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEACSEFSKQMRSVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH++   L++S+LK +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QVVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + +  D   V I S      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEAIRRITRRFMNDPQEVRIQSSVTTRPDISQSYWSVHGVRKNEALVRFLETEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L  H +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 ATIIFVRTKNATLEVAETLERHGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
           ++     P+ E + +R  ++   +    L+S   D+ + +   L    + D E +AA  L
Sbjct: 368 TIPEVELPNAELLSQRRLEKFAAKVQQQLESSDLDQYRALLSKLSTNDELDMETLAASLL 427

Query: 422 RIHRA------------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----- 458
           ++ +                              S     DR   + R  +   G     
Sbjct: 428 KMAQGERPLILPPDPVRRPRREFNDRDDRRRDGFSSRERNDRGDRNDRGDRADRGDKGDR 487

Query: 459 ---SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               R +      + + +G     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 488 PRRERRDVGDMELYRIEIGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPK 547

Query: 516 ----DGVDLLRRTVKLDKGIQLKYLGGEKP 541
               D +    RT  L+K + ++ +G  +P
Sbjct: 548 GMPGDLLSHFTRTRILNKPLNMQLMGDAQP 577


>gi|157148730|ref|YP_001456049.1| ATP-dependent RNA helicase DeaD [Citrobacter koseri ATCC BAA-895]
 gi|157085935|gb|ABV15613.1| hypothetical protein CKO_04559 [Citrobacter koseri ATCC BAA-895]
          Length = 649

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 162/572 (28%), Positives = 263/572 (45%), Gaps = 39/572 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I +AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTEEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR-----------------DDSRAFK 454
           D E +AA  L++ +        + P + +  +  FR                 D      
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRGPRADRGDRED 494

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                R +      + + VG     E R ++  +     I+ + IG I++    + +E+ 
Sbjct: 495 RPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP 554

Query: 515 A----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
                + +    RT  L+K + ++ LG  +P 
Sbjct: 555 KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH 586


>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 635

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 171/600 (28%), Positives = 271/600 (45%), Gaps = 47/600 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L
Sbjct: 5   VTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            + L  E        AP  L +APTRELAVQV             V  V   GG     +
Sbjct: 65  LNNLKPE------LKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA IVVGTPGRL DH++   L++S+L  +VLDEADEML +GF +D+E I+   P
Sbjct: 119 LRALRGGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V 
Sbjct: 179 AQHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  +
Sbjct: 239 FLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R   
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKH 411
            + R   +++     P+ E + +R   +          ++  +  M   LL       + 
Sbjct: 359 NVERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLDMYRALLTKLQPQEEL 416

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------------DSR 451
           D E +AA  L++ +     P  + P  +   R  FRD                    DSR
Sbjct: 417 DVETLAAALLKMAQG--ERPLILPPDPVFRPRREFRDRDESRSDSRGDRRREPRDARDSR 474

Query: 452 AFKVG----GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
             + G       R +      + + VG     E R ++  +     I+ + IG I++   
Sbjct: 475 EPRDGDRPQRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 534

Query: 508 LTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            + +E+      D +    RT  L+K + ++ +G                +     A +R
Sbjct: 535 HSTIELPKGMPGDLLSHFTRTRILNKPMNMQLMGDAVAQPERRGGGRPGGERRDGAAPRR 594


>gi|296283638|ref|ZP_06861636.1| DEAD/DEAH box helicase-like protein [Citromicrobium bathyomarinum
           JL354]
          Length = 586

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 263/577 (45%), Positives = 358/577 (62%), Gaps = 17/577 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P  +  AL+ERGY   T VQ A+L P+ R +D++VSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FSELPDTLQTALTERGYSEPTDVQAAVLEPEARGRDLVVSAQTGSGKTVAFGLAVARQLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            EN +   A APLAL IAPTRELA+QV REL WLYAK G  VA C+GG++   ER+ L++
Sbjct: 63  DENGKVPFAVAPLALVIAPTRELALQVSRELSWLYAKAGGRVATCVGGMNPSAERKALRS 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IVVGTPGRL DH+    L++S LKAV LDEADEMLD+GFR+++E ILD++P+ RR L
Sbjct: 123 GATIVVGTPGRLRDHLERGALDLSALKAVTLDEADEMLDMGFREELETILDATPEGRRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ +A+R++  S +R H DI Y AV+V+  + +NA+VN+LRYH 
Sbjct: 183 LFSATMPKPIEALARRYQNNALRISTVSADRGHGDISYEAVVVSPPEVENAVVNLLRYHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC TR  V      L E  F VV+LSGE SQ ER+ ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCGTREKVRHMHATLQERGFAVVSLSGENSQSERNQALQALRDRRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LV+H E+  + E L HRSGRTGRAGRKG +V V+P + +RR E++ R A
Sbjct: 303 AARGIDLPTLSLVVHVEIPRDAETLQHRSGRTGRAGRKGTAVLVVPFSRRRRVEQMLRNA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W  AP  EAIR +D  R++Q  L        + ++VD LLA+  P ++AA  +  
Sbjct: 363 KIDAKWTDAPDREAIRAKDRDRLMQTLLTAVEPDEGDTELVDALLAQRTPRELAAMLVAS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           HRA +  PE++   +  + R    +  R           F+ + WF + +G ++ A+ RW
Sbjct: 423 HRAKMPEPEDLIANTPEARRAAQAEKHRPG---------FEDTVWFKMDIGRRRNADPRW 473

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-------KLDKGIQLKYL 536
           ++P+LCR   I R  +GAIR+ PD TF ++     D     V            I+++  
Sbjct: 474 ILPLLCRRGHITRNEVGAIRIGPDETFFQIPRAIADKFSAAVARTADDGADGDDIRIEA- 532

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             E P      +     +   +G  K  ++   A   
Sbjct: 533 SAEAPRDAARANRKGPPQGRHNGKPKPHRKNNDAGAR 569


>gi|119470813|ref|ZP_01613424.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
 gi|119446040|gb|EAW27319.1| ATP-dependent RNA helicase, cold shock protein A [Alteromonadales
           bacterium TW-7]
          Length = 600

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 162/600 (27%), Positives = 274/600 (45%), Gaps = 43/600 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L +
Sbjct: 6   TFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLN 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L + PTRELA+QV    E     T  V  +   GG S   +  
Sbjct: 66  NIDPS------VKQPQILVLTPTRELAIQVAEAFEQYAKGTRGVEVLALYGGQSYSIQLS 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I+V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++
Sbjct: 120 ALRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPRE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++  +FSAT+   I  ++  Y  +  +V+I++ N   S ++      A   ++ AIV  L
Sbjct: 180 KQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQ-VFWNASVHKNKAIVRFL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  TR    +  ++L    F    L+G+++QQ R   +  ++ G   V I
Sbjct: 239 EAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + +
Sbjct: 299 ATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAK 410
            R     +     P+ + + E+    +          +D  F + +  +  + +D+ L  
Sbjct: 359 IRHTKSEIAQVELPTAKVVEEKRIAALQAKLSIALENKDITFFNEVATNMAEKLDLPL-- 416

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR-------------FRDDSRAFKVGG 457
              E +A   L + +       E   +      +R              R   R+ +   
Sbjct: 417 ---ENLAGALLCLAQQQSPIKVEEVKIQPRERNERNSRNDRGDRGRRNERGGERSERKPR 473

Query: 458 -GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--- 513
             +  +      + + VG +   + + ++  +   + I+ + IG IR+    + V++   
Sbjct: 474 ERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDQHSTVQLPQN 533

Query: 514 -SADGVDLLRRTVKLDKGIQLKYLGGEKP-DFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
              D +D  ++     + + +     + P + RG + SG + +N      KR    K   
Sbjct: 534 MPKDVLDHFQKVFICKRPMGMTITQDQGPAEPRGERPSGDRKRNDGPRGDKRSGPRKERR 593


>gi|293391610|ref|ZP_06635944.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952144|gb|EFE02263.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 595

 Score =  326 bits (835), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 165/592 (27%), Positives = 280/592 (47%), Gaps = 26/592 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   +  +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L + 
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           + +            P  L +APTRELA+QV    E       G+ +    GG     + 
Sbjct: 61  AKIDPNE------KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +VVGTPGR+ DHIR   LN++ LKA+VLDEADEML +GF +D+E ++   P+
Sbjct: 115 RALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+   I  + K + KD   + I +  +   DI      V    +++A++  
Sbjct: 175 HHQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRF 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + 
Sbjct: 235 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 295 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 354

Query: 359 LFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +      ++     P+   ++A R +  +  +   L    ++   + + D+  A    E 
Sbjct: 355 VEHLIKKNIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQED 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSG--------RDRFRDDSRAFKVGGGSRDNFKGSS 467
           IAA  + + +          PV               R    S   +         +   
Sbjct: 415 IAAAMMMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPMD 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG     E R ++  +     IN + IG I++  D + +E+      + +    +
Sbjct: 475 LYRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFGK 534

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKRFKGASKN 573
           T  L+K +++ ++G  K   RG  + G K +  +  D   K  ++FK  +  
Sbjct: 535 TRVLNKQMRMSFIGEAK-GERGGDNFGGKRRGGRFEDNGFKGERKFKEKTHR 585


>gi|254486145|ref|ZP_05099350.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
 gi|214043014|gb|EEB83652.1| ATP-dependent rna helicase, dead/deah box family [Roseobacter sp.
           GAI101]
          Length = 717

 Score =  326 bits (834), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 283/562 (50%), Positives = 367/562 (65%), Gaps = 18/562 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+++GY +LT VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL E++ 
Sbjct: 3   QTIADALAKQGYDSLTPVQEAVTDPALADADLLVSAQTGSGKTVGFGLAIAPTLLGESET 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY   G VV  C+GG+    ERR L  GAH+V
Sbjct: 63  FGHAGAPLALVIAPTRELAMQVSRELTWLYGPAGAVVTTCVGGMDTRTERRALDRGAHVV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N++ ++AVVLDEADEMLDLGFR+++EFIL  +P+ RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLNDIRAVVLDEADEMLDLGFREELEFILSEAPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ++A RV    E +QH+DI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRNAQRVETIGEAKQHTDIEYRALTVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGELSQ ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTTRFTNRGFSVVALSGELSQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A + V 
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E +   D +R+L D  + D I  D K  V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WANPPSAEEVNAEDEKRLLADSAWSDPIPDDAKGFVANLVDQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      +      D              F  S WFS+SVG  Q AE R ++PM+
Sbjct: 423 SAPEQLAEPGTPADEKPRGD--------------FGPSVWFSISVGRNQDAEPRTILPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFR 544
           CR   + +  +GAIRVQP  TFVE+ A             +K++ G  +  L       R
Sbjct: 469 CRMGDLTKDDVGAIRVQPSHTFVEILATSAAKFTNALGPDMKVEDGAIVTKLDKAPDLSR 528

Query: 545 GYKSSGFKSKNSQDGATKRFKR 566
           G K  G   K  +    +R  R
Sbjct: 529 GPKPGGRGPKPDRGPRPERAPR 550


>gi|23014876|ref|ZP_00054672.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 592

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 272/594 (45%), Positives = 368/594 (61%), Gaps = 24/594 (4%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   P    + +AL+ER Y + T VQEA+L P    +D+LVSAQTGSGKTVA+GLA+
Sbjct: 1   MDFF---PAGHPLLKALTERDYTDPTDVQEAVLEPGAMGRDLLVSAQTGSGKTVAYGLAM 57

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A TLL +     PA+ PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E+
Sbjct: 58  ADTLLGDAFTLEPAAEPLALIVAPTRELALQVHRELSWLYEHAGARVVSCVGGMDPRAEQ 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  GAHIVVGTPGRL DH+   GL I+ LKAVVLDEADEMLDLGFR+D+EFIL+++P+
Sbjct: 118 RSLGQGAHIVVGTPGRLRDHLERGGLRINRLKAVVLDEADEMLDLGFREDLEFILEATPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR L+FSAT+   I  +AK YQ++A R+ +++  + H+DI+YRAV VA ++ ++A+VN+
Sbjct: 178 ERRTLLFSATLPHGIVAMAKRYQRNAWRIAVSAGTQGHADIEYRAVRVAPNEIEHAVVNL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LRY  +  A+VFC+TR SV     +L E  F  VALSGEL Q ER+NALQ +RDGRARVC
Sbjct: 238 LRYFESPTAMVFCNTRDSVRHLQAILLERGFAAVALSGELGQNERNNALQALRDGRARVC 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGIDLP+L LVIHAEL  N + L HRSGRTGRAG+KG+SV ++  + +R+A+ 
Sbjct: 298 VATDVAARGIDLPNLGLVIHAELPQNAQTLQHRSGRTGRAGKKGVSVLLVLLSRRRKADM 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L + A V  +W  APS + IR+ D +R+L  PL  +    D+  M   LLA+   E IAA
Sbjct: 358 LLQTAGVQAIWSGAPSADDIRKLDQERLLTSPLLAEENTEDDLAMARALLAERPAEDIAA 417

Query: 419 GFLRIHRAGLCAPEEI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             +R++R+ L A EE+    P S        R+        G       GS WF +++G 
Sbjct: 418 ALVRMYRSHLPAAEEVFDPGPGSPTREPREHREREPRPPREGKGPGLPGGSVWFRMNIGR 477

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           ++ A+ RWL+PM+CR   + +  IGAIR+    T  E+ A   D     ++  +  +++ 
Sbjct: 478 QKNADPRWLIPMICRQGKVTKAEIGAIRIFERETRFEIDAAHADRFAIALRQIEKAEVRI 537

Query: 536 LG----------GEK---PDFRGYKSSGFKS---KNSQDGATKRFKRFKGASKN 573
                       G K   PD R    +G K    K       K+    KG  + 
Sbjct: 538 ERLAEHSAEPAAGPKPARPDDRPRPPAGVKPLGQKPKAPWKDKKDGHRKGKPER 591


>gi|261868715|ref|YP_003256637.1| cold-shock deAd box protein a [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414047|gb|ACX83418.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 595

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 165/592 (27%), Positives = 280/592 (47%), Gaps = 26/592 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   +  +P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L + 
Sbjct: 1   MTFMDLGLPEFILNAVSDLGFQTPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           + +            P  L +APTRELA+QV    E       G+ +    GG     + 
Sbjct: 61  AKIDPNE------KHPQLLVMAPTRELAIQVADACEQFMKYAKGINIVTLYGGQRYDIQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +VVGTPGR+ DHIR   LN++ LKA+VLDEADEML +GF +D+E ++   P+
Sbjct: 115 RALKQGAQVVVGTPGRILDHIRRGTLNLAELKAIVLDEADEMLRMGFIEDVETVMAELPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+   I  + K + KD   + I +  +   DI      V    +++A++  
Sbjct: 175 HHQTALFSATMPEPIRRITKRFMKDPQEIKIKATQQSAPDIAQSCWYVHGFRKNDALLRF 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + 
Sbjct: 235 LEVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIV 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 295 VATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRN 354

Query: 359 LFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +      ++     P+   ++A R +  +  +   L    ++   + + D+  A    E 
Sbjct: 355 VEHLIKKNIEEVELPNHEVLQACRRKKFKDKITTQLEHHDLELYRQLLEDMFTADQSQED 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSG--------RDRFRDDSRAFKVGGGSRDNFKGSS 467
           IAA  + + +          PV               R    S   +         +   
Sbjct: 415 IAAAMMMLLQGKQKLILPPDPVVEKKARRERGERGDRRENPRSAERRGERKGYGTPQPMD 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG     E R ++  +     IN + IG I++  D + +E+      + +    +
Sbjct: 475 LYRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFGK 534

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKRFKGASKN 573
           T  L+K +++ ++G  K   RG  + G K +  +  D   K  ++FK  +  
Sbjct: 535 TRVLNKQMRMSFIGEAK-GERGGDNFGGKRRGGRFEDNGFKGERKFKEKTHR 585


>gi|316935560|ref|YP_004110542.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315603274|gb|ADU45809.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 701

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 280/585 (47%), Positives = 371/585 (63%), Gaps = 21/585 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F   P  +  AL+ER Y+  T VQ A+L  D   +D+LVSAQTGSGKTVA+GLA+A  L
Sbjct: 2   TFPTSPPPLARALAERNYLEATPVQSAVLASDTAGRDLLVSAQTGSGKTVAYGLAIARDL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + ++F+PA+APLAL +APTRELA+QV REL WLY   G  +  C+GG+   RE+R+L 
Sbjct: 62  LDDAEQFAPAAAPLALIVAPTRELALQVHRELSWLYRHAGARIVSCVGGMDPRREQRELA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRLCDH+R   L++S LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR 
Sbjct: 122 EGAHIVVGTPGRLCDHLRRNRLDVSQLKAVVLDEADEMLDLGFREDMEFILETTPETRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LAK YQ DA+R+ +      H+DI+YRA+ +A  D ++A+VN+LRY 
Sbjct: 182 LLFSATLPRGIIALAKTYQHDAMRIEVEGAEGGHADIEYRAIRIAPGDVEHAVVNVLRYV 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +  AIVFC+TR++V+     L E  F VVALSGEL+Q ER+ AL  +RDGRARVC+ATD
Sbjct: 242 ESPTAIVFCNTRSAVNHLQTALLERGFAVVALSGELTQNERTGALNALRDGRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHAEL ++ E + HRSGRTGRAG KG+SV ++P   +RRAE L + 
Sbjct: 302 VAARGIDLPNLGLVIHAELPNDAEVMQHRSGRTGRAGNKGISVLLVPPARRRRAELLLQL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W  AP  + IR  D QR+LQDPLF +    +++ +   LLA+  PE+IA    R
Sbjct: 362 AGIEANWGTAPQADEIRSLDQQRMLQDPLFTEEPTAEDQALAQALLAERSPEQIAVALAR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------------GSRDNFKGS 466
           + RA + APE+I        R R     +A +                   G +    G 
Sbjct: 422 VVRARMPAPEDILDPGERPARGRDERGGKAAREPRDHEARDKAPRTRSAKAGEKHAMAGG 481

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF  ++G ++ AEARWL+PM+CR  GI RQ IGAIR+    T  E+S    D     +K
Sbjct: 482 VWFRAAIGKRKNAEARWLLPMICRRGGITRQDIGAIRILDTTTEFEISPAAADAFAAQIK 541

Query: 527 L---DKGIQLKYLGGEKPDFRGYKSSGFKS--KNSQDGATKRFKR 566
               D  I+++ L G KP          +   +   D   +R KR
Sbjct: 542 RPDHDDNIRIEPLIGAKPIPPREDKRPPRPDAERKPDREARRAKR 586


>gi|261345155|ref|ZP_05972799.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
 gi|282566845|gb|EFB72380.1| ATP-dependent RNA helicase DeaD [Providencia rustigianii DSM 4541]
          Length = 660

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 160/569 (28%), Positives = 260/569 (45%), Gaps = 42/569 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  ALS+ GY   + +Q+  +   L   DVL  AQTGSGKT AFGL L   +  + 
Sbjct: 14  LSASILNALSDLGYEKPSPIQQQCIPLLLNGNDVLGMAQTGSGKTAAFGLPLLHNIDPD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   L         V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEALSDFSKHMNRVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH++   L++S LK +VLDEADEML +GF DD+E I+   P + +  +F
Sbjct: 128 QVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIDDVENIMSQIPAQHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + KD   + I S      DI      V+   ++ A+V  L      
Sbjct: 188 SATMPEPIRRITRRFMKDPKEIRIQSSITTRPDIAQSYWTVSGMRKNEALVRFLESEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L    +   AL+G+++Q  R   L+ +++GR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKNGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
           ++     P+ E + +R   +          ++  +  +   LLAK  P      E +AA 
Sbjct: 368 TIPEVDLPNAELLSQRRQAQFAAK--VQQQLESSDLDLYRSLLAKVSPSEDVDMETLAAA 425

Query: 420 FLRIHRA-----------------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
            L++ +                                      +  + F    R     
Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRDDRRGDDRRRDRNSSNGFDRAERGESSA 485

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +   + I+ + IG I++    + +E+   
Sbjct: 486 RRERRDVGDMETYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGSHSTIELPKG 545

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKP 541
              + +  L R   L+K +Q++ +G  +P
Sbjct: 546 MPSEVLTHLSRARVLNKPMQMQLIGDAQP 574


>gi|327396268|dbj|BAK13690.1| cold-shock DEAD box protein A DeaD [Pantoea ananatis AJ13355]
          Length = 630

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 161/573 (28%), Positives = 260/573 (45%), Gaps = 34/573 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGR-KTDALVRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  + +    LLAK  PE+   
Sbjct: 359 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELD 416

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------RDDSRAFKVGGGSR 460
              +AA  L++ +                   R               +SR        R
Sbjct: 417 IETLAAALLKMAQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRRER 476

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      D
Sbjct: 477 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGD 536

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS 549
            +    RT  L+K + ++ LG  +P   G    
Sbjct: 537 VLQHFTRTRILNKPMNMQLLGDAQPHEGGRGER 569


>gi|291616016|ref|YP_003518758.1| DeaD [Pantoea ananatis LMG 20103]
 gi|291151046|gb|ADD75630.1| DeaD [Pantoea ananatis LMG 20103]
          Length = 633

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 161/573 (28%), Positives = 260/573 (45%), Gaps = 34/573 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 9   TTFAELGLNAELLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 69  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQL 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P+
Sbjct: 123 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+V  
Sbjct: 183 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGR-KTDALVRF 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 242 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 302 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  + +    LLAK  PE+   
Sbjct: 362 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLAKMQPEEELD 419

Query: 416 ---IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------RDDSRAFKVGGGSR 460
              +AA  L++ +                   R               +SR        R
Sbjct: 420 IETLAAALLKMAQGERPLIVPADAPRPARREFRERDDRRESRDARGPRESRDGDRPRRER 479

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
            +      + + VG     E R ++  +     I+ + IG I++    + +E+      D
Sbjct: 480 RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGD 539

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS 549
            +    RT  L+K + ++ LG  +P   G    
Sbjct: 540 VLQHFTRTRILNKPMNMQLLGDAQPHEGGRGER 572


>gi|126728360|ref|ZP_01744176.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
 gi|126711325|gb|EBA10375.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Sagittula
           stellata E-37]
          Length = 736

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 281/565 (49%), Positives = 374/565 (66%), Gaps = 24/565 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +AL+ERGY  LT VQEA+  P+   +D+LVSAQTGSGKTV FGLA+A TLL E   
Sbjct: 3   PALTDALTERGYATLTPVQEAVTAPEAFGRDLLVSAQTGSGKTVGFGLAIAPTLLGEEQA 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL +APTRELA QV +EL WLY KTG +V  C+GG+ V +ERR L+ G HIV
Sbjct: 63  FGPAGTPLALVVAPTRELAFQVMQELRWLYEKTGAMVNSCVGGMDVRQERRFLERGTHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRLCDHIR   L++S ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR L+FSAT
Sbjct: 123 VGTPGRLCDHIRRGALDLSDVRAVVLDEADEMLDLGFREDLEFILQTAPAERRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +SP I  +A+ +QKDA R+N  ++ +QH+DI Y+A+ VA +D D+AI N+LR+H  ++AI
Sbjct: 183 VSPVIGRIAEEFQKDAFRINTINKAQQHADIAYKALRVAQADSDHAIFNLLRFHDDESAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V+  T  L      VV+LSGELSQQER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFANTRAQVNHLTARLHNRGLSVVSLSGELSQQERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L LVIHA+L +N E+LLHRSGRTGRAG+KG+S  ++P    ++AERL + A ++  
Sbjct: 303 DLPNLSLVIHADLPTNTESLLHRSGRTGRAGKKGISALIVPPKSVKKAERLLKWAKITAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS E I  RD +++L DP +   +  D+ +    LL  H PE +AA  +R+H +  
Sbjct: 363 WAVPPSAEDISARDEEKLLTDPSWQMGVPEDQAEFAARLLEAHGPEAVAAALVRMHLSRH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++      + RD                  F  S WF+LSVG   +AEARWL+P++
Sbjct: 423 SAPEDLQSPDAPARRD---------------TKGFGPSRWFALSVGRNDRAEARWLLPLI 467

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD----KGIQLKYLGGEKPDFR 544
            R++ + + +IGAIRVQ   T+VE++A         +  D      I  + + GE P+F 
Sbjct: 468 LRATDLEKDAIGAIRVQDTETYVEIAAPRAATFEGALGADGMLADNITARAVDGE-PEFS 526

Query: 545 GYKSSGFKSKNSQDGATKRFKRFKG 569
              S         DG  K  K  +G
Sbjct: 527 RRPSGP----RRDDGFRKGPKPHRG 547


>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
 gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
           SH0165]
          Length = 603

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 169/552 (30%), Positives = 276/552 (50%), Gaps = 23/552 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I  +++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  E         P  L +APTRELA+QV    E       G+      GG     + R
Sbjct: 67  QIDPEQ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NGA +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+ 
Sbjct: 121 ALKNGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPED 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+       ++   + ++  AL+G+++QQ R  AL+ ++ GR  V +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + +
Sbjct: 301 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +   P P+ E + E+  ++        L    ++   + + D+  A  D E++
Sbjct: 361 EHLIKKPIDEVPVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFS 470
           AA  + + +      L    EI P     G+ R    S   + GG    +  G     + 
Sbjct: 421 AAAMMMLLQEKQKLILPPDPEIRPSRAERGKGRENPRSAERRGGGREHRDNNGVAMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTV 525
           + +G +   E R ++  +     IN + IG I++    + +E+       L     ++  
Sbjct: 481 IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR 540

Query: 526 KLDKGIQLKYLG 537
            L K +Q+ +LG
Sbjct: 541 VLSKPMQMSFLG 552


>gi|94497195|ref|ZP_01303767.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423300|gb|EAT08329.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 580

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 264/591 (44%), Positives = 362/591 (61%), Gaps = 36/591 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P ++ +AL  +GY  LT VQ  +   +   +D+LVSAQTGSGKTVAFGLA+A  LL
Sbjct: 3   FETLPALLSQALVAKGYEALTPVQSEVTQEEAHGRDLLVSAQTGSGKTVAFGLAMAGELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + +R   A  PLAL IAPTRELA+QV RELEWLY      +A C+GG+   +ERR+L +
Sbjct: 63  GDAERLPVAGLPLALVIAPTRELALQVSRELEWLYGAARARIATCVGGMDAAKERRNLSH 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DH+    L++S ++  VLDEADEMLD+GFR+D+E ILDS+P++RR L
Sbjct: 123 GAHIVVGTPGRLRDHLERGALDLSAMRTAVLDEADEMLDMGFREDLEAILDSAPQERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I T+AK YQKDA+R++  SE R H DI Y+A+ VA SD +NA+VN+LR+H 
Sbjct: 183 LFSATMPKPIVTMAKRYQKDALRISTMSEERGHGDISYQALTVAPSDIENAVVNLLRFHE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F VVALSGE SQ ER++ALQ +RD RARVC+ATDV
Sbjct: 243 AETAILFCATRDNVRHLHASLTERGFAVVALSGEHSQNERNHALQALRDKRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LV+H EL  + E + HRSGRTGRAG+KG +V ++P   +RR E + R A
Sbjct: 303 AARGIDLPSLSLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLRGA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + V W   PS EAI E+D  R+    +    +   +  +   +LA+   ++IAA  ++ 
Sbjct: 363 KIPVEWGTPPSKEAILEQDNARLRASLMERAELDEADWALGAEILAEKSAKEIAAMLVKS 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RA L APEE+             D S A     G R  F+ + WF + +G +Q A+ RW
Sbjct: 423 ARAALPAPEELL------------DRSEAPTRNDGPRPGFEDTQWFRMDIGRRQNADPRW 470

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL---------------- 527
           ++P++CR   ++RQ IGAIR+  + T  E+    V      +K                 
Sbjct: 471 ILPLICRRGHVSRQDIGAIRITTNETMFEIPKAIVSRFTSALKRTGEANDEGADVAFEMI 530

Query: 528 -----DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                ++  Q K  G  +P+ RG + +   S+     A + FK  +     
Sbjct: 531 EGSPREEARQHKRAG--RPNDRGPRGNDRASRPGGH-APRPFKSGRKGPPR 578


>gi|294634522|ref|ZP_06713057.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
 gi|291092036|gb|EFE24597.1| ATP-dependent RNA helicase DeaD [Edwardsiella tarda ATCC 23685]
          Length = 643

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 164/591 (27%), Positives = 269/591 (45%), Gaps = 39/591 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q A +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 11  TTFADLGLAAPIIEALNDLGYEKPSPIQAACIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 70

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 71  NNIDPS------LKAPQVLVLAPTRELAVQVAEAMTDFSKHLHGINVVALYGGQRYDVQL 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L+++ L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 125 RALRQGPQIVVGTPGRLLDHLKRGTLSLASLRGLVLDEADEMLRMGFIEDVETIMAQIPA 184

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + +  +FSAT+  AI  + + +  +   V I S      DI      V    ++ A+V  
Sbjct: 185 EHQTALFSATMPEAIRRITRRFMNEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRF 244

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 245 LEAEDFDAAIIFVRTKNATLEVAEALERNGYSSAALNGDMNQALREQTLERLKDGRLDIL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 305 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVDNRERRLLRN 364

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL---AKHDPE 414
           + R   +++     P+ E +  R   +   +    L+S   D+ + +   L    + D E
Sbjct: 365 IERTMKLTIPEVELPNAELLGTRRLAKFAARVQQQLESSDLDQYRALLAKLQPEEEQDME 424

Query: 415 KIAAGFLRIHRAGLCAPEEITPV------------------SLVSGRDRFRDDSRAFKVG 456
            +AA  L++ +          PV                           RD        
Sbjct: 425 TLAAALLKMAQGERPLILPPDPVIERRPRREFRDRDDRGGDRFARRERDSRDSRDGGDRP 484

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA- 515
              R +      + + VG     E R ++  +     I+ + IG IR+    + +E+   
Sbjct: 485 RRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIRLFGSHSTIELPKG 544

Query: 516 ---DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
              D +    RT  L+K + ++ +G      +  + +G +S    D   +R
Sbjct: 545 MPGDLLTHFTRTRILNKPMNMQLIGDAPAREQRRERTGERS----DRGERR 591


>gi|188532510|ref|YP_001906307.1| ATP-dependent RNA helicase DeaD [Erwinia tasmaniensis Et1/99]
 gi|188027552|emb|CAO95399.1| Cold-shock DEAD-box protein A [Erwinia tasmaniensis Et1/99]
          Length = 636

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 160/585 (27%), Positives = 263/585 (44%), Gaps = 41/585 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 9   TTFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 69  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQL 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 123 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPD 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+   
Sbjct: 183 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGR-KTDALTRF 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 242 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 302 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + ER   +          ++  + +    LL+K  PE    
Sbjct: 362 IERTMKLTIPEVELPNAELLGERRLAKFAAK--VQQQLESSDLEQYRALLSKMQPEDELD 419

Query: 416 ---IAAGFLRIHRAGLC-----------------APEEITPVSLVSGRDRFRDDSRAFKV 455
              +AA  L++ +                       E          R+   +  R    
Sbjct: 420 IETLAAALLKMAQGERPLIVPADAPQRPRREFRERDERRGDRPDRGPREARGEAPRDGDR 479

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 480 PRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPK 539

Query: 516 ----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
               D +    RT  L+K + ++ +G  +P  R  +  G +    
Sbjct: 540 GMPGDVLQHFTRTRILNKPMNMQLIGDAQP--RSNERGGERRPGG 582


>gi|301154834|emb|CBW14297.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 616

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 169/596 (28%), Positives = 281/596 (47%), Gaps = 32/596 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I +A+S+ G+   + +Q+A +   L  +DVL  AQTGSGKT AF L + +
Sbjct: 6   TFNDLGLPEFILKAVSDLGFETPSPIQQACIPALLEGRDVLGMAQTGSGKTAAFSLPILA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +         A  P  L +APTRELA+QV    E       G+ +    GG     + R
Sbjct: 66  KIDPA------AKHPQLLVMAPTRELAIQVADACEHFMKYAKGINIVTLYGGQRYDIQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF DD+E ++   P++
Sbjct: 120 ALKQGAQVVVGTPGRILDHIRRNTLDLSELKAIVLDEADEMLRMGFIDDVETVMAELPEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K +  +   V I   N    DI+     V    +++A++  L
Sbjct: 180 HQTALFSATMPEPIRRITKRFMNNPQEVKIKVNNDNAPDIEQNCWYVQGFRKNDALLRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 240 EVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDIVV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 300 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 359

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+   ++A R +  Q  +   L    ++     + D+  A  D E I
Sbjct: 360 EHLMKKPINEVELPNHEVLQACRRKKFQDKITKQLEHHDLEMYRSLLEDLFTADQDQEDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P            G  R    S   +         +    +
Sbjct: 420 AAAMLMLLQGKQKLILPPDPPMDKRRRDRNDRGDRRENPRSAERRGERKGYGTPQPMDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG     E R ++  +     IN + IG I++  D + VE+      + +    +T 
Sbjct: 480 RIEVGRADGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTVELPQGMPKELLQQFGKTR 539

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGF--------KSKNSQDGATKRFKRFKGASKN 573
            L+K +Q+ ++G  + D  G   + F        +  +  +    RF+  +   + 
Sbjct: 540 VLNKQMQMSFMGAVQSD-SGRSGNDFGGKGRRDGRRNDRGERGQDRFRGERNGERR 594


>gi|152979711|ref|YP_001345340.1| DEAD/DEAH box helicase domain-containing protein [Actinobacillus
           succinogenes 130Z]
 gi|150841434|gb|ABR75405.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 615

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 164/575 (28%), Positives = 273/575 (47%), Gaps = 17/575 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+SE G+ + + +Q A +   L  +DVL  AQTGSGKT AF L L + + ++ 
Sbjct: 13  LPDFILSAVSEMGFESPSPIQHACIPHLLEGRDVLGMAQTGSGKTAAFSLPLLAQIDSDE 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E       G+ +    GG     + R L+ GA
Sbjct: 73  ------KYPQMLVMAPTRELAIQVADACEQFTKNAKGIRIVTLYGGQRYDIQLRALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S LK +VLDEADEML +GF DD+E ++   P++ +  +F
Sbjct: 127 QVVVGTPGRILDHIKRGTLDLSALKFIVLDEADEMLRMGFIDDVETVMAELPEQHQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K +  +   V I S  R + DI      V    ++ A++  L      
Sbjct: 187 SATMPEPIRRITKRFMTNPQEVRIQSTQRTNPDIAQSCWYVRGYRKNEALLRFLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +ATDVAA
Sbjct: 247 AAIIFTRTKTGTLDVTELLDKHGFRAAALNGDMTQQAREQTLDRLRNGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R    
Sbjct: 307 RGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGSAILFVEPRERRLLGNIERLMKK 366

Query: 366 SVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P+   ++A R       +   L    ++     + D+  A  D E IAA  L 
Sbjct: 367 PIEEVELPNHERLQACRRAKFVAKITKQLEHHDLEKYRSLLEDLFTADQDQEDIAAAMLM 426

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + +                   R R +              K    + + +G     E R
Sbjct: 427 LLQGKQKLILPPDAPMPKRNERRERANRSQRSDERRGYGVPKSMDLYRIEIGRSDGVEVR 486

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGG 538
            ++  +     IN ++IG I++  D + +E+        +    +T  L+K +Q+ ++  
Sbjct: 487 HIVGAIANEGDINSRNIGHIKLFDDYSTIELPQGMPKQLLRHFEKTRVLNKQMQMSFVRE 546

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +   R  +   F+ ++ +  A +RF        N
Sbjct: 547 VQSGERAER---FEHRDGKRRANERFHERGEHRFN 578


>gi|251793160|ref|YP_003007888.1| cold-shock deAd box protein a [Aggregatibacter aphrophilus NJ8700]
 gi|247534555|gb|ACS97801.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Aggregatibacter aphrophilus NJ8700]
          Length = 600

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 168/591 (28%), Positives = 281/591 (47%), Gaps = 27/591 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I  A+S+ G+   + +Q+  +   L  +DVL  AQTGSGKT AF L + +
Sbjct: 7   TFADLGLPEFILNAVSDLGFETPSPIQQICIPHLLEGRDVLGMAQTGSGKTAAFSLPILA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E        +  V   GG     + R
Sbjct: 67  KIDPAE------KHPQLLVMAPTRELAIQVADACEHFVKYAKGINVVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+R   L+++ LKA+VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGAQVVVGTPGRILDHLRRGTLSLAELKAIVLDEADEMLRMGFIDDVETVMAELPEH 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  +   DI      V    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIKATQQSAPDIAQSCWYVHGLRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R G   + +
Sbjct: 241 EVEDFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRSGSLDIVV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNV 360

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                 ++     P+   ++A R +  +  +   L    ++   + + D+  A    E I
Sbjct: 361 EHLIKKNIEEVKLPNHEVLQACRRKKFKDKITTQLEHHDLELYRELLEDMFTADQSQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AA  + + +          PV            G  R    S   +       N +    
Sbjct: 421 AAAMMMLLQGKQKLILPPDPVVDKKARRDRGERGDRRENPRSAERRGERKGYGNPQPMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG     E R ++  +     IN + IG I++  D + +E+      + +    +T
Sbjct: 481 YRIEVGRGDGVEVRHIVGAIANEGDINSRYIGHIKLYDDYSTIELPQGMPKELLQQFGKT 540

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ--DGATKRFKRFKGASKN 573
             L+K +++ ++G  K D RG  + G K    +  +   K  ++FK  S  
Sbjct: 541 RVLNKQMRMSFIGEAKGD-RGGDNFGAKRHGGRFKEKGFKGDRKFKEKSHR 590


>gi|238793027|ref|ZP_04636656.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
 gi|238727627|gb|EEQ19152.1| DEAD/DEAH box helicase domain protein [Yersinia intermedia ATCC
           29909]
          Length = 667

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 169/583 (28%), Positives = 268/583 (45%), Gaps = 47/583 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             + AE        +P  L +APTRELA+QV + L         V  V   GG     + 
Sbjct: 67  HNIKAE------LKSPQVLVLAPTRELAIQVAQALSDFSKHINGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E IL   P 
Sbjct: 121 RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + KD   V I S      DI      +     ++ A+V 
Sbjct: 181 EHQTALFSATMPDAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYRKNEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+       + L    +   AL+G+++Q  R   L  ++DGR  +
Sbjct: 241 FLESEDFDAAIIFVRTKNGTLEVAEALESSGYNCAALNGDMNQSLREQTLNRLKDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVDVLL---AKHDP 413
            + R   +++     P+ E + ER   +        L+S   D  + +   L    + D 
Sbjct: 361 NIERTMKLTIPEVQLPNPELLGERRLAQFAAKVGQQLESSDLDLYRALLAKLQPEEEFDL 420

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD------------------------- 448
           E +AA  L++ +     P  + P +    +  F                           
Sbjct: 421 ETLAAALLKMAQG--ERPLILPPEAPRRPQREFNSRDDRGSDRGRDRSDSRRDSRPDSRA 478

Query: 449 DSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           DSR    +     R +      + + VG     E R ++  +     I+ + IG I++  
Sbjct: 479 DSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA 538

Query: 507 DLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
             + +E+      + +    RT  L+K + ++ LG  +P  R 
Sbjct: 539 SHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERR 581


>gi|326404232|ref|YP_004284314.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
 gi|325051094|dbj|BAJ81432.1| putative ATP-dependent RNA helicase [Acidiphilium multivorum
           AIU301]
          Length = 571

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 271/571 (47%), Positives = 362/571 (63%), Gaps = 16/571 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  AL+ RGY + T+VQ A+L P+   +D+LVSAQTGSGKTVA+GLA A+T+L E D 
Sbjct: 8   PALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAATILDE-DV 66

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA APLAL IAPTRELA+QV  EL WLY  TG  V  C+GG+   RE+R L  G HIV
Sbjct: 67  LPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRALAGGCHIV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DHI  + L++  L+ VVLDEADEMLDLGFRD++EFIL +SP  RR L+FSAT
Sbjct: 127 VGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADRRTLLFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I+  I  LA+ YQ+DA+R++  + N+ H+DI+YRA+ +A  + ++ +VN+LR+H     +
Sbjct: 187 IAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLRFHEGAGCL 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCSTR SV +    L E  F  VALSGELSQ ER+ ALQ +RDGRARVCIATDVAARG+
Sbjct: 247 VFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIATDVAARGL 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHA+L +N   LLHRSGRTGRAGRKG+ + ++P   +RRAE L   AN+  +
Sbjct: 307 DLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLLASANIRAI 366

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           WE  P+ EAIR RD  R+L DP+  ++   +E  +   LLA    + +A   +R++RA L
Sbjct: 367 WEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATALIRLYRARL 426

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEEI P   V  R                 ++ +   WF   VG ++KA+ +WL+P +
Sbjct: 427 PAPEEIAPQPEVLPR--------PAARRAAGAEDGRAMVWFRCDVGRRKKADPKWLLPAI 478

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG-GEKPD----- 542
           CR  G+ ++ IGAIR+    T  E+ AD  D     +      +++    G +P      
Sbjct: 479 CRVGGVTKRDIGAIRIFDHETRFEIGADVADAFAAAIGAGTNSEMRIEPAGHQPGTAAED 538

Query: 543 -FRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             RG K   F+   S+  A    +R   A K
Sbjct: 539 FGRGRKEGRFRKSPSRIKAHAPPRRGGKARK 569


>gi|84516304|ref|ZP_01003664.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
 gi|84510000|gb|EAQ06457.1| DEAD-box protein, ATP-independent RNA helicase [Loktanella
           vestfoldensis SKA53]
          Length = 762

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 289/571 (50%), Positives = 380/571 (66%), Gaps = 16/571 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  ALS +GY +LT VQ A+ +  + ++D+LVSAQTGSGKTV FGLA+  T+L E+  
Sbjct: 6   PTLAAALSAQGYTDLTPVQVAVTDAAVADQDLLVSAQTGSGKTVGFGLAIGPTILPEDGL 65

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL IAPTRELA+QV REL+WLYA TG V+A C+GG+    E+R L+ GA IV
Sbjct: 66  FGPAGRPLALVIAPTRELALQVKRELQWLYAGTGAVLASCVGGMDFRDEKRSLERGAQIV 125

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S +KAV+LDEADEMLDLGFR+D+EFILD +P  RR LMFSAT
Sbjct: 126 VATPGRLRDHIMRNTIDLSDIKAVILDEADEMLDLGFREDLEFILDQAPPSRRTLMFSAT 185

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA++YQK+AVRV   S+  QHSDI+YRA+ VA  D D AI+N+LR++ A NAI
Sbjct: 186 VPAAIAKLAQSYQKNAVRVASTSKESQHSDIEYRALTVANHDIDAAIINVLRFYDAPNAI 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V+R T  LA   F  VALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 246 VFANTRAMVTRLTTRLANRGFATVALSGELSQTERTHALQAMRDGRARVCVATDVAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL +N E LLHRSGRTGRAGRKG+S  ++P  M+RRA+ L     +   
Sbjct: 306 DLPNLELVIHAELPTNAEILLHRSGRTGRAGRKGISAMIVPAKMKRRAQNLLTWGKLQAT 365

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   P+ + +  +D  R+L DP++ ++    E++    LLA+H PEKIAA +LR++    
Sbjct: 366 WALPPTADEVTAKDEDRLLTDPVWSETFTDSEQEFAARLLAQHAPEKIAAAYLRLYAGKQ 425

Query: 429 CAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            APEE++      +  DR  D  R  +       +F  S WF + VG   KAEARWL+PM
Sbjct: 426 SAPEELSDYKDGPAAPDRKGDPDRPPR----DHKSFGPSRWFRVDVGRDGKAEARWLLPM 481

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGG-EKPD 542
           +C++ GI +  IGAIR+QPD TFVE+S   V          + L+   +L  + G  +  
Sbjct: 482 ICKAGGITKTEIGAIRIQPDETFVEISEPAVAGFLAAIGPDMVLENQAKLSAIDGAPQIG 541

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            RG ++        +D  T + +R     ++
Sbjct: 542 DRGPRT------TKRDYDTPKPRRHAPQGQD 566


>gi|254419014|ref|ZP_05032738.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
 gi|196185191|gb|EDX80167.1| DbpA RNA binding domain family [Brevundimonas sp. BAL3]
          Length = 634

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 271/577 (46%), Positives = 364/577 (63%), Gaps = 8/577 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +  AL  +GY   T VQ A+L  +  E+D+LVSAQTGSGKTVAFGLA A TLL
Sbjct: 3   FPAVHPALDRALVNKGYAEPTPVQAAVLEGEYAERDLLVSAQTGSGKTVAFGLAAAPTLL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   F P  APL LAIAPTRELA+QV  EL+WLYA +G  +A C+GG+   RE R L  
Sbjct: 63  GDKPIFGPGGAPLCLAIAPTRELAMQVAAELQWLYADSGAKIATCVGGMDARREARALGF 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD +P +RR L
Sbjct: 123 GVHIVVGTPGRLKDHIDRGNLDLSELKVAVLDEADEMLDMGFREDLEFILDHAPAERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+  I TLAK YQKDAVR++   ++RQH+DI+YRA  +A ++ ++A+VN LR++ 
Sbjct: 183 LFSATIAREIVTLAKRYQKDAVRIDATDKSRQHADIEYRAYRIAPNEIEHAVVNTLRWYE 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  A+VFCSTR SV      L E  F  V+LSGE+ Q+ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 APRAMVFCSTRDSVRHLQASLLERGFSTVSLSGEMGQRERTDALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPDL LVIHAEL  N   LLHRSGRTGRAG+KG+SV ++P + +R+AERL  EA
Sbjct: 303 AARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGVSVMLVPHSRRRKAERLMDEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  VW  AP+ + IR+ D  R+L    F   +  ++  +   ++A+  P++IAA  +R+
Sbjct: 363 GIDAVWSGAPTFDEIRKADEGRLLSPEFFEADVSDEDMIVAKRMIAERTPDEIAAALVRL 422

Query: 424 HRAGLCAPEEITPV-----SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            R    APEE++        +   R    +D  A +   G R       WF L VG  + 
Sbjct: 423 LRKEQPAPEELSDPGSDRSPVKRERTVRNEDGTAAQPWPGDRLGADDVVWFRLDVGRNKN 482

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
           A+ +WL+P++CR  GI++  IGAIR  P+ T  E++       R  V      ++K    
Sbjct: 483 ADPKWLIPLICRIGGISKPQIGAIRTFPEETRFEIAKTHEKAFREAVAASND-EVKITSS 541

Query: 539 EKPDFRGYKSSGF--KSKNSQDGATKRFKRFKGASKN 573
           E P     K+  F    K  ++   + FK+      +
Sbjct: 542 EAPTPGSMKAGKFAGAGKPRREDGDRPFKKTPYKRAD 578


>gi|260429679|ref|ZP_05783655.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
 gi|260419162|gb|EEX12416.1| dead-box ATP-dependent rna helicase 53 [Citreicella sp. SE45]
          Length = 772

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 295/567 (52%), Positives = 388/567 (68%), Gaps = 19/567 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +ALSERGY  LT VQEA++ P+L   D+LVSAQTGSGKTV FGLA+A TLL +  RF
Sbjct: 4   PLSDALSERGYDTLTPVQEAVIAPELAGLDLLVSAQTGSGKTVGFGLAIAPTLLGDETRF 63

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            PA+APLAL +APTRELA QV REL WL+A+TG VVA C+GG+ V +ERR L+ GAHIVV
Sbjct: 64  GPAAAPLALVVAPTRELAFQVMRELTWLFARTGAVVASCVGGMDVRQERRALERGAHIVV 123

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DHI  + L++S ++AVVLDEADEMLDLGFR+D+EF+L  +P+ RR L+FSAT+
Sbjct: 124 GTPGRLRDHIERESLDLSAIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATV 183

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            P I TLAK+YQ+DA RVN      QH+DI Y+A+ VA SD ++AI N+LR+H  ++AIV
Sbjct: 184 PPMIATLAKSYQRDARRVNTVDSASQHADISYQAIRVAQSDVEHAIFNLLRFHDDESAIV 243

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA+VSR T  LA      V+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGID
Sbjct: 244 FANTRAAVSRLTARLANRGLATVSLSGELSQTERSHALQAMRDGRARVCVATDVAARGID 303

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L LVIHA+L +N E LLHRSGRTGRAGRKG+S  ++P  + ++AERL + A +S  W
Sbjct: 304 LPNLNLVIHADLPTNTETLLHRSGRTGRAGRKGISALIVPSKVAKKAERLLKWAKISAEW 363

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
             APSV+ I+ +D +R+L DP++ + +  ++    + LLA H PE IAA +LR+++A   
Sbjct: 364 TVAPSVDDIQRKDEERLLADPVWSEPLTEEQGAFAEKLLALHQPEVIAAAYLRLYQARHA 423

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           A EE+ P          RD              F  S W +LSVG   +AEARWL+P+LC
Sbjct: 424 AAEELLPPDTKPAAREPRD--------------FGPSRWVTLSVGRDNRAEARWLLPLLC 469

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFRG 545
           R+  +++ SIGAIRVQ   TFVE++   V+    +      L++GI  + + G  P F  
Sbjct: 470 RAGNLDKSSIGAIRVQDSETFVELAEPSVEGFVASLGEGGLLEEGISARLVEGV-PAFSA 528

Query: 546 YKSSGFKSKNSQDGATKRFKRFKGASK 572
            +     S+  +       +  +G  K
Sbjct: 529 GRPPKGDSRGPRPEGRDPRRDDRGPRK 555


>gi|300742137|ref|ZP_07072158.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381322|gb|EFJ77884.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 719

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 170/588 (28%), Positives = 278/588 (47%), Gaps = 25/588 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY   + +QE  + P L   DV+  AQTG+GKT AF L   S +    
Sbjct: 135 LDPRVLSALEEVGYEKPSPIQEQTIPPLLDGNDVVGLAQTGTGKTAAFALPALSRMAELA 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    +     L +APTRELA+QV                +   GG     +   L+ GA
Sbjct: 195 DINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGA 254

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +F
Sbjct: 255 QVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALF 314

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ Y  D   V + ++    ++I  R + V  S + +A+  +L      
Sbjct: 315 SATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYD 374

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+         L    FQ  A++G++ QQ R   +  +RDGR  + +ATDVAA
Sbjct: 375 GIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAA 434

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++ +    
Sbjct: 435 RGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQ 494

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG 419
            V     P+ + +     QR  +     ++I+ ++    +K+++    +HD   E IAA 
Sbjct: 495 KVEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAEDIAAA 552

Query: 420 FLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
              I + G    L   ++I   S     D      R  K G    D  +G   + L+VG 
Sbjct: 553 LAVIAQQGRAFFLDENDDIARKSRAFADDTKDRGKRGPKKGRNHSD--EGMVNYKLNVGR 610

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGI 531
             + +A  ++  L    GI    IG+I ++   T V +  D      D LR T    + I
Sbjct: 611 ASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPKGFFDRLRDTKIAGEFI 670

Query: 532 QLKYLGGEK----PDFR--GYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            ++   G +      FR    +  GF+S+       +  +R K   K 
Sbjct: 671 NIRKDRGPQGGGGRSFRRNDRRDGGFRSRRDDHRGGRDDRRGKSHGKR 718


>gi|311740664|ref|ZP_07714491.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304184|gb|EFQ80260.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 619

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 158/550 (28%), Positives = 277/550 (50%), Gaps = 23/550 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 62  LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQID--- 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              + A  P AL +APTRELA+QV    +        V  +   GG +   +   L+ GA
Sbjct: 119 ---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL      
Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     PSV+ + E+  ++  Q     +S+   +      L+ K+        + IAA 
Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAA 473

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDS----RAFKVGGGSRDNFKGSSWFSLSVGS 475
              + + G     E  P+         RDD     ++   G G +        + L VG 
Sbjct: 474 LAVMLQGGKNFLMEDKPLPKPKRDRDRRDDRKRDFKSGGKGRGPKRPDGDFETYRLDVGK 533

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGI 531
           +Q      ++  +    G++ +  G I +    T V++  +     +D L+ T    + I
Sbjct: 534 RQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKNLDPAVLDRLKDTRISGQLI 593

Query: 532 QLKYLGGEKP 541
           +++   G  P
Sbjct: 594 KIQKDTGRPP 603


>gi|153005772|ref|YP_001380097.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029345|gb|ABS27113.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 585

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 254/586 (43%), Positives = 353/586 (60%), Gaps = 18/586 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  AL  RGY+  TSVQ A+L P  R +D+LVS++TGSGKTVAFGLAL
Sbjct: 1   MNTFSSVGAHPALLPALDRRGYLEPTSVQAAVLEPAHRGQDLLVSSRTGSGKTVAFGLAL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A TLL + D F  A  P AL +APTRELAVQV REL WL+A  G  VA C+GG+   RE 
Sbjct: 61  AETLLGDADAFGEAGPPGALVVAPTRELAVQVQRELAWLFADAGGRVASCVGGMDPRREA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G H+VVGTPGRL DH+    L++S L+A+VLDEADEMLD+GFR+++E +L ++P 
Sbjct: 121 RALAEGTHVVVGTPGRLVDHLERGALDLSALRALVLDEADEMLDMGFREELEKLLGAAPP 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+   I  LAK Y +DA R+        H+DI YRA +VA  +R++A+VN+
Sbjct: 181 DRRTVLFSATLPRPILELAKRYTRDASRIAATPAGEAHADIAYRAHVVAPREREHAVVNV 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     +A+VF +TR +V      L E  F+VVA+SGEL+Q ER+ AL+ +RDGRARV 
Sbjct: 241 LREAEPPSALVFRATREAVQHTAVSLGERGFEVVAISGELTQAERTRALKSLRDGRARVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+DLP + LV+HA+L  + E L HRSGRTGRAGRKG++V +     + R ER
Sbjct: 301 VATDVAARGLDLPGIALVLHADLPRDAEALQHRSGRTGRAGRKGVAVLLAAPPERYRLER 360

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-HDPEKIA 417
           + R+A V   W P P+ EAIR  DA+R+  D + L     +E       LA+     ++A
Sbjct: 361 MLRDAGVRAEWTPVPTAEAIRAGDAERLAADVVALAGDAAEEDLAAARRLAESRSALELA 420

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              +R  R+   APEE+   +  +     R + RA + G  +      + WF LS+G  +
Sbjct: 421 VALVRRDRSRRPAPEELPETARAAREVPARAEKRAPRAGPPA-----NAVWFRLSLGRAR 475

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI----QL 533
           +A+ RW++P+LCR  G+ R  IG I +QP+ T  EV+AD      R  +         ++
Sbjct: 476 QADPRWVLPLLCRRGGVTRDEIGKIVIQPEETRFEVAADAAQRFLRAARRPDPRMPDARI 535

Query: 534 KYL------GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           + L      G  +   R  ++ G +     DG     +R   A+K 
Sbjct: 536 ELLGTNPRAGEPRHAPRPVRAEGARRHERADGEPAPPRRSAPAAKR 581


>gi|183600372|ref|ZP_02961865.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
 gi|188020163|gb|EDU58203.1| hypothetical protein PROSTU_03938 [Providencia stuartii ATCC 25827]
          Length = 622

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 154/559 (27%), Positives = 261/559 (46%), Gaps = 32/559 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +Q+  +   +   DVL  AQTGSGKT AF L L   +  + 
Sbjct: 14  LSASILTALNDLGYEKPSPIQKQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   + ++    + V V    GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + K+   + I +      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVDRISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
           ++     P  + + ER   +  +        +  +      LL K  P      E +AA 
Sbjct: 368 TIPEVELPDSQLLSERRQAKFAEK--IQQQFESSDLDQYRALLKKLSPSEDVDMETLAAA 425

Query: 420 FLRIHRA-------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            L++ +                    +          + F    R  + G   R +    
Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRRDRNGNGFDRAERGDRSGRRERRDVGDM 485

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR 522
             + + VG     E R ++  +   + I+ + IG I++    + +E+      + +  L 
Sbjct: 486 EMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGSHSTIELPKGMPTEVLTHLS 545

Query: 523 RTVKLDKGIQLKYLGGEKP 541
           R   L+K +Q++ +G  +P
Sbjct: 546 RARILNKPMQMQLIGDAQP 564


>gi|310830312|ref|YP_003965412.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753218|gb|ADO44361.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 672

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 269/571 (47%), Positives = 370/571 (64%), Gaps = 8/571 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
             +NI   +  ALS+RGY  LT+VQ+A+L P+   +D+LVSAQTGSGKTVAFG+A+A  L
Sbjct: 2   THQNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +++     + P+AL IAPTRELA+QV +EL WLYA  G  +A C+GG+    ERR L 
Sbjct: 62  LGDDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IVVGTPGRL DHI   GL++S L+  VLDEADEMLDLGFRDD+++IL ++P+ RR 
Sbjct: 122 RLPQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT+   I  LA+++Q DA+R+    E +QH+DI Y+A+ V + DR+NAI N+LR++
Sbjct: 182 LMFSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFY 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            ++ AI+FC TRA+V+     ++   F+VVALSGELSQQER+NALQ +RDGRA VCIATD
Sbjct: 242 ESRTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP LELVIH +L +N E LLHRSGRTGRAG KG+S  ++     ++A+RL   
Sbjct: 302 VAARGIDLPGLELVIHYDLPTNAETLLHRSGRTGRAGAKGVSALIVTPGDFKKAQRLLSF 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A V+  W  APS E +  RD  R+++ P     +  D+  + + LLA+   E+I+A F++
Sbjct: 362 AKVTAEWGKAPSAEEVSARDDLRMVEHPALTTKL--DDMTVANDLLARFGAEQISAAFVQ 419

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + R G  APE +T V+  +        + A +    S   F  S WFSLS G   +AEAR
Sbjct: 420 LWREGRPAPEALTVVNTPTP-----GAAPAPREPRTSPREFGASVWFSLSAGHVDRAEAR 474

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           WL+P +C + GI R +IGAIRV+   TFV+++A+         +++ G+ L  + GE P+
Sbjct: 475 WLLPKICDAGGITRDAIGAIRVRESETFVQIAANEAGRFANVSEIEPGLTLTQIDGE-PN 533

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                S   K    + G   +     G  K 
Sbjct: 534 LEQRSSGPKKFGAGKPGKFAKGGESWGDKKQ 564


>gi|299135345|ref|ZP_07028536.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298590322|gb|EFI50526.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 653

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 281/589 (47%), Positives = 373/589 (63%), Gaps = 20/589 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  I   +  AL+ER Y  LT VQ A+L  D  ++D+LVSAQTGSGKTVA+GLA+A  L
Sbjct: 2   TFPTISSPLARALAERNYDKLTPVQTAVLADDAADRDLLVSAQTGSGKTVAYGLAIAKNL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + +RF  A+APLAL +APTRELA+QV REL WLY      +  C+GG+   RE+R+L 
Sbjct: 62  LGDAERFPRAAAPLALIVAPTRELALQVHRELTWLYHYADARIVSCVGGMDPRREQRELA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRLCDH+R   L+IS LKAVVLDEADEMLDLGFR+D+EFIL+++P+ RR 
Sbjct: 122 EGAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLDLGFREDMEFILETTPETRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT    I TLAK YQ+ A RV +A +   H+DIDYRA+ +A SD ++A VN+LR+ 
Sbjct: 182 LLFSATFPRGIITLAKQYQQQAFRVEVAGDEGGHADIDYRAIRIAASDVEHATVNVLRFF 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            + +A+VFC+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATD
Sbjct: 242 ESPSALVFCNTRNAVKHLQVALMERGFSVVALSGELTQNERTQALQALRDGRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L+LVIHA+L ++ E L HRSGRTGRAGRKG+SV ++P   +RRA+ L   
Sbjct: 302 VAARGIDLPNLDLVIHADLPNDAEVLQHRSGRTGRAGRKGVSVLLVPPARRRRADILLNL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           AN+ V W  AP+ + IRE D +R+LQD LF   +  D+  +   LLA+  PE IAA   R
Sbjct: 362 ANIDVDWSMAPTADEIRELDQKRMLQDDLFAQEVTADDLNLARALLAERSPEDIAAALAR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDD-----------------SRAFKVGGGSRDNFKG 465
           ++RA L +PE+I      +GR R                         K         +G
Sbjct: 422 LYRARLPSPEDILDPGQNAGRSRDERGRAKDDRSSRDDDRGTGSRSKTKKPSARHGMAEG 481

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           S WF  ++G K+ AEARWL+PM+CR  GI++Q IG I +    T  E+S    +     +
Sbjct: 482 SVWFRAAIGRKKNAEARWLLPMICRRGGIDKQDIGRILIGETSTEFEISERAAESFAAKI 541

Query: 526 K---LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +    +  I+++ +G    D    +    K +   D    R ++   A 
Sbjct: 542 RRPDKEDNIRIEPMGDAPRDHAPAEKRPHKPRRDGDDTGHRERQNDKAR 590


>gi|126727015|ref|ZP_01742853.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703687|gb|EBA02782.1| DEAD/DEAH box helicase-like protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 700

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 279/561 (49%), Positives = 376/561 (67%), Gaps = 12/561 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+ RGY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+ S++L ++  
Sbjct: 3   KTLADALAARGYETLTQVQEAVTKPELADADLLVSAQTGSGKTVGFGLAIGSSILEDDGS 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F+ A  PLAL IAPTRELA+QV REL+WLY KTG  V  C+GG+ +  ERR L  GAHIV
Sbjct: 63  FAQADKPLALVIAPTRELALQVKRELDWLYGKTGAKVVSCVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +N++ L+AVVLDEADEMLDLGFR+D+EFIL  +P++RR LMFSAT
Sbjct: 123 VATPGRLRDHIMRNSMNMTELRAVVLDEADEMLDLGFREDLEFILGEAPEERRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA++YQ DAVRV   +E++QHSDI+YRA++V+  D +NAIVN+LRY+ A NA+
Sbjct: 183 VPKQIARLAQSYQNDAVRVTTVAESKQHSDIEYRAMVVSARDVENAIVNVLRYYEAPNAL 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T   +   F VVALSGEL+Q ER++ALQ MRDGRAR+CIATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTTRFSNRGFSVVALSGELTQNERTHALQAMRDGRARICIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP LELVIH +L +N E LLHRSGRTGRAGRKG+S  ++P + + +A RL   A V+  
Sbjct: 303 DLPGLELVIHGDLPTNSETLLHRSGRTGRAGRKGVSALIVPSSQRSKANRLLGGAKVTAD 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD +RIL DP +L++ +    + ++ L+A +  E+IA  ++++     
Sbjct: 363 WGDAPSADEVFARDKERILADPSWLEAAEPRHVETIEALVATYSAEQIATAYMKLFAVRQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++      G  R        + G   R+ F  S+WFS+  G +  AE R L+PML
Sbjct: 423 SAPEEVSAAGPSGG--RDGGRGDKGRSGAHPREEFGPSTWFSIEGGHEAGAEPRRLLPML 480

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG------GEKPD 542
           C++  + ++ +GAIRV+ + +FVEV  D      + +    G  +K  G       + PD
Sbjct: 481 CKAGNLTKEDLGAIRVRDNQSFVEVRKDSAAGFVKAL----GNSMKIEGSKVTALDKAPD 536

Query: 543 FRGYKSSGFKSKNSQDGATKR 563
             G  S G   + S  G   R
Sbjct: 537 LGGPSSRGPARRGSSGGKFDR 557


>gi|99080431|ref|YP_612585.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99036711|gb|ABF63323.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 710

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 278/573 (48%), Positives = 377/573 (65%), Gaps = 17/573 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL  RGY +LT VQEA+ NP+L   D+LVSAQTGSGKTV FGLA+A T+L E
Sbjct: 8   HLIPTLQQALERRGYTSLTPVQEAVSNPELAGADLLVSAQTGSGKTVGFGLAIAPTILGE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  F  A++PLAL IAPTRELA+QV REL WLY   G V+A C+GG+ +  ERR L+ GA
Sbjct: 68  DGTFERAASPLALVIAPTRELALQVKRELSWLYGDAGAVLASCVGGMDMRDERRALERGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHI    +++S + AVVLDEADEMLDLGFR+D+EFIL+ +P+ R+ L+F
Sbjct: 128 HIVVATPGRLRDHITRGSIDLSGVAAVVLDEADEMLDLGFREDLEFILEETPEDRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  LA+ YQ DA R++  +++ QHSDI Y A +VA  D +NAI+N+LR+H A 
Sbjct: 188 SATVSKPIAALAQTYQNDAQRISTINKSEQHSDISYLAHVVAPHDIENAIINVLRFHEAP 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVF +TRA+V+R    L+   FQVVALSGELSQ ER+ ALQ MRDGRAR+C+ATDVAA
Sbjct: 248 NAIVFANTRAAVNRLLTRLSNRGFQVVALSGELSQSERAGALQAMRDGRARICVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGIDLP+L+LV+HA+L S+ E LLHRSGRTGRAGRKG S  ++     R+AERL REA +
Sbjct: 308 RGIDLPNLDLVVHADLPSSHETLLHRSGRTGRAGRKGASALMVTPRSVRKAERLLREAKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           S  W  APS + +R RD +R+L D ++ +     +++ +  L+    PE++AAG+LR+  
Sbjct: 368 SAEWIDAPSADEVRGRDLERMLSDTVWTEEAPESQQETLAKLVESFSPEQLAAGYLRLWS 427

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           A   APEE+T V+ +  R +  D +            F  S WF++  G    A+ R L+
Sbjct: 428 AARSAPEELTDVAAMDTRKKKEDRA-----------PFGPSVWFAIDGGRDAGADPRRLL 476

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEK- 540
           PMLC++ GI++ +IGAIR+  D ++ E++ D V+    T    + LD G  L+ L     
Sbjct: 477 PMLCKAGGIDKTAIGAIRIVGDKSYAEIAEDKVEGFMATLGGEMALDDGSALERLSEAPN 536

Query: 541 -PDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            P+                    +   +KG  K
Sbjct: 537 LPERSKPPFRKGGGGGRGGFGGGKPGGYKGERK 569


>gi|258511452|ref|YP_003184886.1| DEAD/DEAH box helicase domain-containing protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478178|gb|ACV58497.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 541

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 153/557 (27%), Positives = 268/557 (48%), Gaps = 35/557 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  + + + +A+ + G+   + +Q A +   L  +DV+  AQTG+GKT AFG+ L
Sbjct: 16  MSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPL 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    R S      A+ + PTRELA+QV  E+  +     V      GG S+  + 
Sbjct: 76  VE-------RVSTEPRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQI 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IV+GTPGR+ DHI    L++S ++ VVLDEADEMLD+GF DDIE IL  +P 
Sbjct: 129 RALKQGVQIVIGTPGRVLDHIHRGTLSLSDVRMVVLDEADEMLDMGFIDDIEAILRETPS 188

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    +  LA  Y +D   + +         ID     V   ++ +++  I
Sbjct: 189 DRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRI 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  I+FC T+  V    + L    +    L G+LSQ +R   ++  R     + 
Sbjct: 249 VDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ ++  +PE+ +HR GRTGRAG++G+++ ++     +  ++
Sbjct: 309 VATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQ 368

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + RE    +     PS+E + ER A+  R     +  +      + ++  L+ +HDP  I
Sbjct: 369 IEREIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDI 428

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A+  L++  +G                    + + + +   G      G   F ++VG  
Sbjct: 429 ASALLKLASSG------------------DGNRTESDEYDFGDTGARPGMVRFFVNVGRT 470

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            +   +  +  +   +G+   ++G I +    TF+EV  +    +   ++  +      +
Sbjct: 471 SRMSPQDFVRAISEEAGVPGDAVGRIDMFEKFTFIEVEEESAPFVYEALRQSR------I 524

Query: 537 GGEKPDFRGYKSSGFKS 553
            G + +    K    + 
Sbjct: 525 NGTRVNLEPAKPRSSRR 541


>gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  322 bits (825), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 167/552 (30%), Positives = 270/552 (48%), Gaps = 21/552 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  +   I ++L+E GYV  + +Q + +   L  +DVL  AQTGSGKT AF L L   L
Sbjct: 9   SFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL 68

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDL 121
                      AP  L +APTRELAVQV             +  +   GG     + R L
Sbjct: 69  NIN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   PK+ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+  AI  ++K + ++   + I S      DI     +V    + +A++  L  
Sbjct: 183 TALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGR-KTDALIRFLEA 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ +++GR  + IAT
Sbjct: 242 EDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R
Sbjct: 302 DVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIA 417
               S+     P VE + +R  ++  +     L+S   DE   +   L      D + +A
Sbjct: 362 TMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTLA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG-----RDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           A  L++ +       +   +   S       DR R+D+R  +     RD  K +  + + 
Sbjct: 422 AALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYRIE 481

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLD 528
           VG     E R ++  +     IN ++IG I++    + +E+      D +    RT  L+
Sbjct: 482 VGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRILN 541

Query: 529 KGIQLKYLGGEK 540
           K I +K L   +
Sbjct: 542 KPINMKLLRDSR 553


>gi|146340215|ref|YP_001205263.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
 gi|146193021|emb|CAL77030.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. ORS278]
          Length = 634

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 272/583 (46%), Positives = 373/583 (63%), Gaps = 25/583 (4%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           +ER YVN T VQ A+L  D   +D+LVSAQTGSGKTVA+GLA+A+ +L E +RF PA+AP
Sbjct: 2   AERNYVNPTPVQLAVLAEDAEGRDLLVSAQTGSGKTVAYGLAMAANMLGEAERFGPAAAP 61

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           LAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+L+ GAHIVVGTPGRL
Sbjct: 62  LALIVAPTRELALQVQRELAWLYQHAGARVISCVGGMDPRREQRELEAGAHIVVGTPGRL 121

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           CDH+R   L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR L+FSAT    I  
Sbjct: 122 CDHLRRGRLDISELKAVVLDEADEMLNLGFREDLEFILETTPETRRTLLFSATFPRGIVA 181

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LAK YQ DA R+ +  +   H+DI+YRA+ +A  D ++A+VN+LR++ + +AIVFC+TR 
Sbjct: 182 LAKQYQDDAFRIEVEGDEGGHADIEYRAIRIAPDDAEHAVVNLLRFYESPSAIVFCNTRE 241

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +V      L E  F VVALSGEL+Q ER+ ALQ +RDGR+RVC+ATDVAARGIDL +L+L
Sbjct: 242 AVRHLQAALLERGFSVVALSGELTQNERTMALQSLRDGRSRVCVATDVAARGIDLANLDL 301

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VIHAEL ++PE + HRSGRTGRAGRKG+SV ++    +RRAE L + A +   W  AP  
Sbjct: 302 VIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVSPARRRRAEMLLKLAGIEAEWGAAPQA 361

Query: 376 EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT 435
           E IR+ D +R+LQD +  +    ++  +   LLA+  PE IAA  +R++RA L +PE+I 
Sbjct: 362 EEIRKLDQERMLQDSVLTEESTAEDLALAQALLAERSPEDIAAALVRLYRARLPSPEDIL 421

Query: 436 PVSLVSGRDRFRDDSRAFKVGGGSRDNF--------------KGSSWFSLSVGSKQKAEA 481
                 GR R    +R     G  R                 + S WF  ++G ++ AEA
Sbjct: 422 DPGEDRGRSRPDRAARERPSRGEERAPAPRTKGGKPSRHGMGEPSVWFRAAIGRRKNAEA 481

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLGG 538
           RWL+PM+CR  GI++Q IGAI++    T  E++A   D     ++    +  I+++ L  
Sbjct: 482 RWLLPMICRRGGIDKQDIGAIKISDTTTEFEIAARVADSFTANIRRPDKEDTIRIEPLAA 541

Query: 539 --------EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                   +KP  R      +   +  +   +   + +G    
Sbjct: 542 APSAAARPDKPPRRKADEGSYHPLDRDEPRDRADDKPRGKPPR 584


>gi|77359936|ref|YP_339511.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874847|emb|CAI86068.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 616

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 158/608 (25%), Positives = 274/608 (45%), Gaps = 44/608 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E GY   + +Q   +   L  KDVL  AQTG+GKT AF L L +
Sbjct: 6   TFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLN 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L + PTRELA+QV    E        +  +   GG S   +  
Sbjct: 66  NIDPS------VKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLS 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++V TPGRL DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++
Sbjct: 120 ALRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPRE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++  +FSAT+   I  ++  Y  +  +V+I++ N   S ++      A   ++ AIV  L
Sbjct: 180 KQTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQ-VFWNASIHKNKAIVRFL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  TR    +  ++L    F    L+G+++QQ R   ++ ++ G   V I
Sbjct: 239 EAEQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVERLKSGMLNVVI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +   + +
Sbjct: 299 ATDVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA---KHDPEK 415
            R  N  +     P+ + + E+  + +     L L++        V   +A   +   E 
Sbjct: 359 IRHTNSDIAQVELPTAKIVEEKRIEALQAKLTLALENKDITFFNEVAANMAQKLELSAED 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF---------------------- 453
           +A   L + +       E   +      +R   + R+                       
Sbjct: 419 LAGALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGDRGRRNERGGERGGERAER 478

Query: 454 KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           K    +  +      + + VG +   + + ++  +   + I+ + IG IR+  + + V++
Sbjct: 479 KPRERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQL 538

Query: 514 ----SADGVDLLRRTVKLDKGIQLKYLGGEKP----DFRGYKSSGFKSKNSQDGATKRFK 565
                 D +D  ++     + + L     + P      R  + +G + ++     + R  
Sbjct: 539 PKNMPKDVLDHFQKVFICKRPMGLTITADQGPAEPRGERSERPAGGEKRSFNKDDSARGD 598

Query: 566 RFKGASKN 573
           +  G  K 
Sbjct: 599 KRSGPRKE 606


>gi|51892785|ref|YP_075476.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856474|dbj|BAD40632.1| ATP-dependent RNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 526

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 152/521 (29%), Positives = 264/521 (50%), Gaps = 27/521 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL + G+   + +Q   +   L+ KDV+  AQTG+GKT AFG+ +   L+   
Sbjct: 13  LSEKVLKALDDMGFEEPSPIQAQAIPALLQGKDVIGQAQTGTGKTAAFGVPIVERLVPGQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL + PTRELA+QV  E+  +     V      GG S+ R+ R L+ G  
Sbjct: 73  ------RAVQALVLTPTRELAIQVAEEITKIGRHARVKTIAIYGGQSIERQIRSLRFGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ DH+    L++S ++ VVLDEADEMLD+GF +DIE IL ++P +R+ L+FS
Sbjct: 127 VVIGTPGRILDHLGRSTLDLSQVRMVVLDEADEMLDMGFIEDIEKILQNTPAERQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  Y +D + +++  +      ID     V  S +  A+  IL     + 
Sbjct: 187 ATMPPEIRRLAGRYMRDPITISVTPQQLTVPQIDQYFCEVRPSFKTEALTRILDIENVER 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I FC T+  V    + L    +Q   + G+++Q +R+  +   ++G   + +ATDVAAR
Sbjct: 247 GICFCRTKKGVDELVEALQARGYQAEGIHGDMNQAQRNRVMSRFKEGYIELLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V + ++  +PE+ +HR GRTGRAGR G ++ ++      +   + R     
Sbjct: 307 GLDISDVTHVFNYDIPQDPESYVHRIGRTGRAGRTGTAITLVTPREFPQLRLIERVIKAR 366

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +   P P++  + E+  +++ +    +  +   G+ +++ + LLA++DP  + A  L++ 
Sbjct: 367 LQRRPVPTLSDVAEKQREQLKERLIKILEEDKLGEFRELAEDLLAEYDPSDLVAAALKLV 426

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            +G   P +   +                    G      G     L+VG  Q  +   +
Sbjct: 427 -SGEGKPAQQAQMEF------------------GDTGAEAGMVRLFLNVGRAQAIQPADI 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           +  + + + I   SIG I +    TFVEV  +    + + +
Sbjct: 468 VRTIAQEANIPGSSIGIINIYDRFTFVEVPKEVAAQVMQAM 508


>gi|15616977|ref|NP_240190.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681730|ref|YP_002468116.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682285|ref|YP_002468669.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471430|ref|ZP_05635429.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386733|sp|P57453|DEAD_BUCAI RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|25403610|pir||D84973 ATP-dependent RNA helicase deaD [imported] - Buchnera sp.  (strain
           APS)
 gi|10039042|dbj|BAB13076.1| ATP-dependent RNA helicase deaD [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622018|gb|ACL30174.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624573|gb|ACL30728.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086109|gb|ADP66191.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086682|gb|ADP66763.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087268|gb|ADP67348.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 601

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 167/552 (30%), Positives = 270/552 (48%), Gaps = 21/552 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  +   I ++L+E GYV  + +Q + +   L  +DVL  AQTGSGKT AF L L   L
Sbjct: 9   SFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL 68

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDL 121
                      AP  L +APTRELAVQV             +  +   GG     + R L
Sbjct: 69  NIN------LKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   PK+ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+  AI  ++K + ++   + I S      DI     +V    + +A++  L  
Sbjct: 183 TALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGR-KTDALIRFLEA 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ +++GR  + IAT
Sbjct: 242 EDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLDILIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R
Sbjct: 302 DVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL---AKHDPEKIA 417
               S+     P VE + +R  ++  +     L+S   DE   +   L      D + +A
Sbjct: 362 TMKQSIPEVQLPKVELLCQRRLEQFAKKVQQQLESRDLDEYSALLDKLYSTDDLDIKTLA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG-----RDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           A  L++ +       +   +   S       DR R+D+R  +     RD  K +  + + 
Sbjct: 422 AALLKMAQGERPLIIKPDVIKRQSRDLLFQDDRRREDNRNSRTRRDRRDINKDAELYRIE 481

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLD 528
           VG     E R ++  +     IN ++IG I++    + +E+      D +    RT  L+
Sbjct: 482 VGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYSTIELPKGMSKDLLQTFNRTRILN 541

Query: 529 KGIQLKYLGGEK 540
           K I +K L   +
Sbjct: 542 KPINMKLLRDSR 553


>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
 gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
          Length = 603

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 167/552 (30%), Positives = 274/552 (49%), Gaps = 23/552 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I  +++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILNSVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  E         P  L +APTRELA+QV    E       G+      GG     + R
Sbjct: 67  QIDPEQ------RHPQMLVMAPTRELAIQVADACEQFSKNMKGIRTVTIYGGQRYDIQIR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NG  +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+ 
Sbjct: 121 ALKNGVQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEMLRMGFIEDVETVMAELPED 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+       ++   + ++  AL+G+++QQ R  AL+ ++ GR  V +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQAREQALEKLKSGRLDVIV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + +
Sbjct: 301 ATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLKNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +   P P+ E + E+  ++        L    ++   + + D+  A  D E++
Sbjct: 361 EHLIKKPIDEVPVPNHEILMEKRREKFKARISLQLEHHDLELYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFS 470
           AA  + + +      L    EI P     G+      S   + GG    +  G     + 
Sbjct: 421 AAAMMMLLQEKQKLILPPDPEIRPSRAERGKGHENPRSAERRGGGREHRDNNGVAMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTV 525
           + +G +   E R ++  +     IN + IG I++    + +E+       L     ++  
Sbjct: 481 IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR 540

Query: 526 KLDKGIQLKYLG 537
            L K +Q+ +LG
Sbjct: 541 VLSKPMQMSFLG 552


>gi|254517068|ref|ZP_05129126.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
 gi|219674573|gb|EED30941.1| cold-shock deAd-box protein a [gamma proteobacterium NOR5-3]
          Length = 609

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 165/598 (27%), Positives = 283/598 (47%), Gaps = 39/598 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +ALS+ GY   +++Q   + P L  KD++  AQTG+GKT AF L + + L  + 
Sbjct: 15  LPAFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLDPK- 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                 S P AL +APTRELA+QV    +     + G  V    GG     + R L+ G 
Sbjct: 74  -----LSKPQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLERGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R   LN+S L  +VLDEADEML +GF DD+E+IL+ +P KR++ +F
Sbjct: 129 HVIVGTPGRVMDHMRRGSLNLSALTTLVLDEADEMLRMGFIDDVEWILEQTPPKRQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +AK +      + I  +   ++ I  R  ++    + +A+  IL      
Sbjct: 189 SATMPDAIRRIAKQHLNKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR +       L+   +   AL+G+++Q +R   ++ ++ G   + IATDVAA
Sbjct: 249 GVIIFVRTRIATQELADKLSARGYATAALNGDIAQNQREKTVENLKKGGLDILIATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++       +R    + R    
Sbjct: 309 RGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVTGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     P+ E + ++ A R        +++   +      L+  +  E      +IAA 
Sbjct: 369 KIESMELPTSEQVSDKRASRF--KARITETLDTRDLGAARELVESYQQEFGVPIIEIAAA 426

Query: 420 FLRIHRAGLCAPEEITPVSLVS----------GRDRFRDDSRAFKVGGGSRDNFK----- 464
            + +++    A     PV              GRDR RD +R        +   +     
Sbjct: 427 LVVMNQGSAKAIPAAEPVKPSRERPARAERSPGRDRDRDQARGQDRERTPKRPKESAPRD 486

Query: 465 ---GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
              G   + + VG +   +   ++  +   + ++ + IG I+++ D +FV++      + 
Sbjct: 487 ADVGMDRYRIEVGRQHGVKPGNIVGAIANEAEVDAEYIGRIQIEDDHSFVDLPDGMPKEI 546

Query: 518 VDLLRRTVKLDKGIQLKYLGG--EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              L+      + +Q+        KP  RG  +SG    ++        KR     + 
Sbjct: 547 FKHLKSVWVSGQKLQISRAADHTAKPAKRGGAASGSAKNDTGAKKDVGAKRKGPRKRK 604


>gi|56963965|ref|YP_175696.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56910208|dbj|BAD64735.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 537

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 168/570 (29%), Positives = 280/570 (49%), Gaps = 42/570 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  I   + +A+ + G+   + +QE  +   L   DV+  AQTG+GKT AFG+ +
Sbjct: 1   MTYFTDFDISDQVKQAIQDMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D+ +      AL + PTRELA+QV  EL+ L A   +      GG S+  + 
Sbjct: 61  V-------DKVTEERYIQALILTPTRELAIQVSGELQKLSAHKRIRTLPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +V+GTPGR+ DH+R   L ++ +  VVLDEADEMLD+GF DDIE IL    +
Sbjct: 114 KALRQGVQVVIGTPGRMLDHLRRGTLKLNSVHTVVLDEADEMLDMGFVDDIEAILKEVNQ 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ PAI  L++ Y  D   V I         I+     V   ++ +++  I
Sbjct: 174 VRQTLLFSATMPPAIRKLSRKYMNDPKTVTINKGEVTAPSINQVYYKVLERNKIDSLCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  I+FC T+  V+  T+ L    + V  L G+L+Q +R   ++  RD      
Sbjct: 234 IDSDDVELGILFCRTKKGVAELTEALQARGYLVDGLHGDLTQSQRDVVMKKFRDSSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  +PE+ +HR GRTGRAGR G ++ ++     +    
Sbjct: 294 IATDVAARGIDVENVTHVINYDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAKHD 412
           + +E  + +     P++E + E+  Q+     L  D+I+   K+M      VD +LA+ D
Sbjct: 354 IEKEIKMHIPSASVPTIEEVVEK--QQSSWKNLIQDTIEQGGKEMELFLPLVDEILAEQD 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           P+++ A  L++  +   A E+                        G     KG   F ++
Sbjct: 412 PKQVVAALLKLKFSTETATED-------------------AGYSFGDTGGAKGMVRFFIN 452

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           VG       + L   + R  GI  +SIG I +  + +FV+V  +    +       +G++
Sbjct: 453 VGRNVNLTPKILGEEIGRLVGIPVKSIGRIDIFENFSFVDVPEEAAPFVY------EGLR 506

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
              + G + +    K    + + +  G+ +
Sbjct: 507 YSRINGARVNLEPAKPRPKRERRTPAGSRR 536


>gi|148272405|ref|YP_001221966.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830335|emb|CAN01269.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 586

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 160/583 (27%), Positives = 272/583 (46%), Gaps = 40/583 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + +AL + GY   +++Q A +   L  +DVL  AQTG+GKT AF L + 
Sbjct: 18  TTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPIL 77

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S L            P AL +APTRELA+QV    E   +    V  +   GG     + 
Sbjct: 78  SNLDVSQ------KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQL 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +PK
Sbjct: 132 SALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +++ +FSAT+   I  ++  Y +D   + + ++    ++   R ++V+   + +A+  I
Sbjct: 192 SKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRI 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVF  T+       + L    +   A+SG+++Q +R   ++ +++G+  + 
Sbjct: 252 LETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDIL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 312 VATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTA 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKH 411
           + +     +     PS E +      R        L D   LD+     + +V   +  H
Sbjct: 372 IEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAF----RDIVGHYVNHH 427

Query: 412 D--PEKIAAGFLRIHRAG----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
           D     +AA    + +                 E        GRD      R  +   GS
Sbjct: 428 DVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDERGERRARPARGS 487

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
                  + + + VG + + E R ++  L    G +R+  G I ++PD + VE+ A    
Sbjct: 488 ----GNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAGLPQ 543

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
           D +D L  TV   + I ++   G         +   + +  +D
Sbjct: 544 DRIDRLASTVINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD 586


>gi|148260838|ref|YP_001234965.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146402519|gb|ABQ31046.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 574

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 271/571 (47%), Positives = 362/571 (63%), Gaps = 16/571 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  AL+ RGY + T+VQ A+L P+   +D+LVSAQTGSGKTVA+GLA A+T+L E D 
Sbjct: 11  PALQHALAARGYADPTAVQSAVLEPEAEGRDLLVSAQTGSGKTVAYGLAFAATILDE-DV 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA APLAL IAPTRELA+QV  EL WLY  TG  V  C+GG+   RE+R L +G HIV
Sbjct: 70  LPPAGAPLALIIAPTRELAIQVHAELAWLYEHTGASVVSCVGGMDPRREQRALASGCHIV 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DHI  + L++  L+ VVLDEADEMLDLGFRD++EFIL +SP  RR L+FSAT
Sbjct: 130 VGTPGRLQDHIERRHLDLGRLRVVVLDEADEMLDLGFRDELEFILGASPADRRTLLFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I+  I  LA+ YQ+DA+R++  + N+ H+DI+YRA+ +A  + ++ +VN+LR+H     +
Sbjct: 190 IAREIAALARQYQRDALRIDTVARNQPHADIEYRAIRIAAHEVEHGLVNLLRFHEGAGCL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFCSTR SV +    L E  F  VALSGELSQ ER+ ALQ +RDGRARVCIATDVAARG+
Sbjct: 250 VFCSTRESVRQLYGRLQERGFAAVALSGELSQSERNAALQSLRDGRARVCIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LVIHA+L +N   LLHRSGRTGRAGRKG+ + ++P   +RRAE L   AN+  +
Sbjct: 310 DLPNLDLVIHADLPANKATLLHRSGRTGRAGRKGLCLLMVPDRSRRRAEVLLASANIRAI 369

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           WE  P+ EAIR RD  R+L DP+  ++   +E  +   LLA    + +A   +R++RA L
Sbjct: 370 WEAPPTAEAIRARDHARLLTDPVLTEAPLDEEIALARELLANRSADVVATALIRLYRARL 429

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEEI P   V  R                 ++ +   WF   VG ++KA+ +WL+P +
Sbjct: 430 PAPEEIAPQPEVLPR--------PAARRAAGAEDGRAMVWFRCDVGRRKKADPKWLLPAI 481

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG-GEKPD----- 542
           CR  G+ ++ IGAIR+    T  E+ AD  D     +      +++    G +P      
Sbjct: 482 CRVGGVTKRDIGAIRIFDHETRFEIGADVADAFAAAIGAGTNSEMRIEPAGHQPGTAAED 541

Query: 543 -FRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             RG K   F    S+  A    +R   A K
Sbjct: 542 FGRGRKEGRFGKSPSRIKAHAPPRRGGKARK 572


>gi|146313234|ref|YP_001178308.1| ATP-dependent RNA helicase DeaD [Enterobacter sp. 638]
 gi|145320110|gb|ABP62257.1| ATP-dependent RNA helicase CsdA [Enterobacter sp. 638]
          Length = 655

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/607 (26%), Positives = 270/607 (44%), Gaps = 55/607 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNIDPE------LRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + KD   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQTFWSVHGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQSLREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLL------AKH 411
           + R   +++     P+ E + +R  ++   +    L+S   D+ + +   +       + 
Sbjct: 360 IERIMKLTIPEADLPNAELLGKRRLEKFAAKVQQQLESSDLDKYRELLTQIKPTAEGEEL 419

Query: 412 DPEKIAAGFLRIHRA-------------------------------GLCAPEEITPVSLV 440
           D E +AA  L++ +                                      +  P    
Sbjct: 420 DIETLAAALLKMAQGERALIVPADAPMRPKREFRERDERFERRDRNDRGDRNDRGPRPER 479

Query: 441 SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
           +        +   +     R        + + VG     E R ++  +     I+ + IG
Sbjct: 480 AAGAAGAAGAAGEERPRRERREAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIG 539

Query: 501 AIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
            I++    + +E+      + +    RT  L+K + ++ +G  +P        G + +  
Sbjct: 540 NIKLFGTHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLMGDAQP----RPDRGPRREGD 595

Query: 557 QDGATKR 563
           +    +R
Sbjct: 596 RPAGERR 602


>gi|83592722|ref|YP_426474.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83575636|gb|ABC22187.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 677

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 266/541 (49%), Positives = 349/541 (64%), Gaps = 19/541 (3%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   P    + +AL ER Y   T+VQ A+L P  + +D+LVSAQTGSGKTVA+GLA+
Sbjct: 1   MDFF---PAGHPLTQALIERNYTEPTAVQTAVLEPGAQGRDLLVSAQTGSGKTVAYGLAI 57

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           ASTLL +     PA+ PLAL +APTRELA+QV REL WLY   G  V  C+GG+    E 
Sbjct: 58  ASTLLGDEAVLEPATEPLALIVAPTRELALQVHRELAWLYGHAGAKVVSCVGGMDPRAET 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HIVVGTPGRL DH+    L +  LKAVVLDEADEMLDLGFR+D+EF+L+++P+
Sbjct: 118 RRLGEGCHIVVGTPGRLRDHLERGNLAVGRLKAVVLDEADEMLDLGFREDLEFLLEATPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR L+FSAT+  AI TLAK YQ++A R+ +A+  + H+DI+YRA+ VA ++ ++A+VN+
Sbjct: 178 ERRTLLFSATLPKAIVTLAKRYQREAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LRY  +   +VFC+TR SV     +L E  F  VALSGEL Q ER+ ALQ +RDGRARVC
Sbjct: 238 LRYVESPATLVFCNTRESVRHLQAILLERGFAAVALSGELGQGERNQALQALRDGRARVC 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGIDLP++ LVIHAEL  N + L HRSGRTGRAGRKG+SV ++  + +RRAE+
Sbjct: 298 VATDVAARGIDLPNIGLVIHAELPQNAQTLQHRSGRTGRAGRKGISVLLVLFSRKRRAEQ 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L   A V   W  APS + IR  D +R+LQ PL  + +  D+  M   LLA   PE+IAA
Sbjct: 358 LLETAGVRAQWGGAPSADDIRALDQERLLQSPLVSEDLTEDDLAMAKALLAVRSPEEIAA 417

Query: 419 GFLRIHRAGLCAPEEI-----------TPVSLVSGRDRFRDDSRAFKVGGGSRDN---FK 464
             +R++RA L A E++                 + RDR RD  R          N     
Sbjct: 418 ALVRMYRAQLPAAEDVFAAGTAEPSPEPRARRPASRDRDRDGEREPMTEPRPGRNSGLSG 477

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
            S  F L+VG ++ A+ RWL+PM+CR   I +Q IGAI +    T +E++A   +     
Sbjct: 478 PSVCFRLNVGRQKNADPRWLVPMICRLGKITKQEIGAISIFERDTKIEIAAAFAERFIAA 537

Query: 525 V 525
           V
Sbjct: 538 V 538


>gi|300021887|ref|YP_003754498.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523708|gb|ADJ22177.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 652

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 273/576 (47%), Positives = 370/576 (64%), Gaps = 17/576 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F ++   +G ALS RGY   T+VQ A+L  +   +D+LVSAQTGSGKTVAFGLA+ASTL
Sbjct: 2   TFPSVHPALGRALSARGYSAPTAVQLAVLEANTVGRDLLVSAQTGSGKTVAFGLAMASTL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L E +R S A+ PLAL IAPTRELA+QV REL+WLYA TG  V  C+GG+    E R L 
Sbjct: 62  LGEAERLSQAAEPLALIIAPTRELAMQVQRELDWLYADTGARVVTCVGGMDARAEARQLG 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRL DH+  + L+++ L AVVLDEADEMLDLGFR+D+EFILD++P+ R+ 
Sbjct: 122 FGAHIVVGTPGRLRDHLERRRLDLTKLAAVVLDEADEMLDLGFREDLEFILDATPEGRQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA+ YQ+DAVR+     N QH+DIDYRA+ +A +D +NAIVN+LR+H
Sbjct: 182 LLFSATMPREIEALARRYQRDAVRIETVKRNEQHADIDYRAIRIAPADTENAIVNVLRFH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A  A+VFCSTR +V R    L E  F  VALSGEL+Q ER++ALQ +RD RARV +ATD
Sbjct: 242 EADAALVFCSTREAVKRTHARLLERGFAAVALSGELTQNERTHALQALRDSRARVLVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+DLP L LVIHA+L +N E LLHRSGRTGRAG KG+SV ++P N +R+A+ L   
Sbjct: 302 VAARGLDLPALALVIHADLPNNAETLLHRSGRTGRAGNKGLSVLIVPFNRRRKADALLAA 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A + V W  AP+ E IR RD +R L   +F D    D+  +   L A    ++IA   +R
Sbjct: 362 AKLKVTWGSAPTSEEIRARDQERFLASSIFTDPATNDDLNLSQSLQANRSADEIALALVR 421

Query: 423 IHRAGLCAPEEITPVSLVS------------GRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +HRA L APE+++                    +R     +  +     RD+ +   WF 
Sbjct: 422 MHRAQLPAPEDLSDDPGPPQRRDDRARAPRERDERAGLRPKDHRSTRPVRDHGREMVWFR 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL---RRTVKL 527
           + +G ++ AE RWL+P+LCR+  + +  IG+I++    T  +++A+  D      R +K 
Sbjct: 482 IDIGRERNAEPRWLLPLLCRAGNVTKAEIGSIKIFDRDTRFQIAAEFADTFADAARAMKP 541

Query: 528 DKGIQLKYLGGEKPDFRGYKSSG-FKSKNSQDGATK 562
           ++G ++  +G    D  G   +  F ++   D   K
Sbjct: 542 NEG-RISRIGASMGDDAGTPGNPTFAARQQNDDEGK 576


>gi|254464595|ref|ZP_05078006.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
 gi|206685503|gb|EDZ45985.1| RNA helicase DeaD [Rhodobacterales bacterium Y4I]
          Length = 678

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 281/567 (49%), Positives = 370/567 (65%), Gaps = 16/567 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL ERGY  LT VQEA+  PD+  +D+LVSAQTGSGKTV FGLALA  LL E++ 
Sbjct: 3   QALANALQERGYETLTQVQEAVTQPDVEGRDLLVSAQTGSGKTVGFGLALAQDLLGEDES 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A+APLAL IAPTRELA+QV  EL WLY + G V+A C+GG+ +  ERR L  GAHIV
Sbjct: 63  FGEAAAPLALVIAPTRELALQVKHELSWLYREAGAVIASCVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
             TPGRL DHI    +++S ++ VVLDEADEMLDLGFR+D+EFIL  +P+ RR L+FSAT
Sbjct: 123 AATPGRLRDHIARGSIDLSQVRGVVLDEADEMLDLGFREDLEFILGEAPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI +LA+ +Q+DA+R+  A E +QH+DI+YR + VA +D +NAI+N+LRY+ A +AI
Sbjct: 183 VPPAIASLAEAFQRDAMRIKTAGETKQHADIEYRLMNVAQADAENAIINVLRYYEAPSAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA+V+R    L+     VV LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFANTRAAVNRLAARLSNRGLPVVTLSGELSQTERSHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP LELV+HAEL SN E LLHRSGRTGRAGRKG+S  + P   + +A RL + A ++  
Sbjct: 303 DLPGLELVVHAELPSNHETLLHRSGRTGRAGRKGVSALIAPPKARAKALRLLKWAKLTAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
              APS + +  RD +R+L DP++   ++ +E+  V  LL     E+IAA +LR+ R+  
Sbjct: 363 HCEAPSADDVLARDEERMLADPVWQQPVEENEQAGVRTLLDNFSAEQIAATYLRLFRSRH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APE++ P                 +     R  F  S WFSLS G +  A+ R ++PML
Sbjct: 423 SAPEDLRPAGEE-----------EPRKERKERKAFGPSVWFSLSGGHEAGADPRKVLPML 471

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGGEKPDFR 544
           C++  I+R +IGAIRVQ + TF E+S   VD   + +    +L+ G  L  L  E PD  
Sbjct: 472 CKAGNIDRDAIGAIRVQDNETFAEISEGAVDGFLKALDGKTELEPGAVLTRL-SEAPDLA 530

Query: 545 GYKSSGFKSKNSQDGATKRFKRFKGAS 571
                G           ++ K  +G  
Sbjct: 531 PAPRRGPSGPKGGFKGDRKPKPHRGKE 557


>gi|307824650|ref|ZP_07654874.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734304|gb|EFO05157.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 596

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 164/595 (27%), Positives = 273/595 (45%), Gaps = 36/595 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  AL + GY   + +Q   +   L+ KDVL  AQTG+GKT AF L + S
Sbjct: 10  SFSDLALIEPVLRALKDVGYETPSPIQAQTIPLLLQGKDVLGQAQTGTGKTAAFALPILS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  +         P  L +APTRELA+QV    +   A       +   GG     + R
Sbjct: 70  RIDLKQKD------PQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYTTQLR 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+R   LN+  L  +VLDEADEML +GF DD+E+ILD  P+K
Sbjct: 124 QLKRGAHVVVGTPGRVMDHMRKGTLNLKGLGFLVLDEADEMLRMGFIDDVEWILDQIPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+   I  +A+ Y  +   + I        +I  R  LV+   + +A+  IL
Sbjct: 184 RQIALFSATMPSVIRKIAQQYLNEPEHITIKVTTASAENIRQRYWLVSGVHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ S     + L    +   A++G++SQ  R  A+  +++G+  + I
Sbjct: 244 EAETFDGMIIFVRTKTSTVELAEKLEARGYSAAAINGDMSQALRERAIANLKNGKLDILI 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  I    +     +
Sbjct: 304 ATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERNLLANI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            +     V     PS E I  +   R  Q+    D++  +E      LL ++  E     
Sbjct: 364 EKATKQKVEEMGLPSTEVINNKRISRFKQN--ITDTLAAEELSFFSQLLEQYQQEHNVTA 421

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVS-------------LVSGRDRFRDDSRAFKVGGGSR 460
            +IA+   ++ +       +  P                 +  DR + D +  +  GG  
Sbjct: 422 LEIASALAKLVQGETPLLLQNLPKKSKDSRDDRPSRDDRSARPDRPQKDRKPKRAFGGGA 481

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
           D       + + VG     +   ++  +   +GI+   I  IR+Q D + VE+ A    +
Sbjct: 482 DIE--METYRIEVGHTHGVKPGNIVGAIANETGIDGDHIARIRIQDDYSTVELPAGIPKE 539

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             + L++     + + +  +            S  K   S+       +R K  +
Sbjct: 540 LFEELKKVRVAGQQLNISKMSEGAKKAAKDDDSAKKVDKSKKRVGSPSRRAKPKA 594


>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 528

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 159/561 (28%), Positives = 275/561 (49%), Gaps = 41/561 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  NI + +  A+ E G+   + +QE ++   L   D++  AQTG+GKT AFG+ +
Sbjct: 1   MMTFEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              A+ + PTRELA+QV  E++ L     V      GG S+ ++ 
Sbjct: 61  LEKL-------KRTKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  K L++S +   VLDEADEMLD+GF +DIE I+  S +
Sbjct: 114 KQLKRGVDIVVGTPGRVLDHVNRKTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  L+  Y     +V I+        I+     V   ++ +++  +
Sbjct: 174 ERQTLLFSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEKNKLDSLCRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  VS   + L    ++   L G+L+Q +R + ++  RD      
Sbjct: 234 IDSENTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  V++ ++  +PE+ +HR GRTGRAGR+G+++ ++     +    
Sbjct: 294 IATDVAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK------KMVDVLLAKHD 412
           +  E  + +  +  PSVE + E+  Q+ +     +D I+ D++       +V  LL  + 
Sbjct: 354 IENEIKMKIPSQNLPSVEEVIEK--QQDVWKSQVIDMIENDDEGVSHYDAIVTDLLDHYQ 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           PEK+    +++                        +         G     KG + F ++
Sbjct: 412 PEKVVTALMKLAFYS------------------HDEKISKETYNFGETGAQKGMTRFFIN 453

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           VG       + L+  + +  GI+ ++IG I +  + TF+EV  +    +       +G++
Sbjct: 454 VGRNVDMTPKKLVDEVAKLVGISPKAIGKIDIFENFTFIEVPEEVAPFVY------EGLK 507

Query: 533 LKYLGGEKPDFRGYKSSGFKS 553
            + + G K +    K    + 
Sbjct: 508 YQRVSGAKINLEPAKPRPKRK 528


>gi|332304872|ref|YP_004432723.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172201|gb|AEE21455.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 576

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 153/572 (26%), Positives = 267/572 (46%), Gaps = 37/572 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   T +Q   +   +   D+L +AQTG+GKT AF L + + + A 
Sbjct: 13  NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           N      S    L +APTRELA+QV    +   + +  +  +   GG S   + R L+ G
Sbjct: 73  N------SNTQLLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI+   L + +LK +VLDEADEML +GF DD+E+IL  +P +R+  +
Sbjct: 127 AQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K Y  D  +V I S+    S I  R   VA   +  A+  I+     
Sbjct: 187 FSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEEF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +    ++ L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV 
Sbjct: 247 DAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + R   
Sbjct: 307 ARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERATR 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA------KHDPEKIAA 418
            S+   P PS+  + E    R       +++I     + +  ++       +  PE I A
Sbjct: 367 QSIDPMPIPSISQLNETRLSRF--KSSVIEAISDSSIETLIPIVESIQAETEASPEVIMA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDR------------------FRDDSRAFKVGGGSR 460
              +I +       +      ++                              +    S 
Sbjct: 425 ALAKIAQGDEPLILKEGDRPDLNAAPPRGDRGGRDDRGGRGRERGGDRGGDRPQRSRKSS 484

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-- 518
              +G   + + VG    A+   ++  +   + I+ ++IGAI +  + + V++  +    
Sbjct: 485 TPDEGMQRYRIEVGHTHGAKPGNIVGAIANEANISSKNIGAIEIYDNFSTVDLPKNMPRA 544

Query: 519 --DLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
             D L++T    + + ++    + P  RG   
Sbjct: 545 TQDTLQKTRVAGQRLNMREWSDQPPRRRGKPE 576


>gi|268592819|ref|ZP_06127040.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
 gi|291311604|gb|EFE52057.1| ATP-dependent RNA helicase DeaD [Providencia rettgeri DSM 1131]
          Length = 643

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 158/562 (28%), Positives = 261/562 (46%), Gaps = 35/562 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +Q+  +   +   DVL  AQTGSGKT AF L L   +  + 
Sbjct: 14  LSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAAFSLPLLHNIDPD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV   +         V  V   GG     + R L+ G 
Sbjct: 73  -----LKAPQILVLAPTRELAVQVAEAMSDFSKHMNRVNVVALYGGQRYDVQLRALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   L++S LK +VLDEADEML +GF +D+E I+   P + +  +F
Sbjct: 128 QIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + + KD   + I +      DI      V    ++ A+V  L      
Sbjct: 188 SATMPEPIRRITRRFMKDPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRFLEAEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   +
Sbjct: 308 RGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNVERTMKL 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
           ++     P  + + +R   +  +       ++  +      LLAK  P      E +AA 
Sbjct: 368 TIPEVELPDADLLSQRRQAKFAEK--IQQQLESSDLDQYRSLLAKMSPSEDVDMETLAAA 425

Query: 420 FLRIHRA----------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            L++ +                      ++       S  + F    R  + G   R + 
Sbjct: 426 LLKMAQGERALILPPDAPRRPRREFNDRDDRRGDRRNSNGNGFDRAERGERGGRRERRDV 485

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVD 519
                + + VG     E R ++  +   + I+ + IG I++    + +E+      D + 
Sbjct: 486 GDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMPTDVLT 545

Query: 520 LLRRTVKLDKGIQLKYLGGEKP 541
            L R   L+K  Q++ +G  +P
Sbjct: 546 HLSRARILNKPTQMQLIGDAQP 567


>gi|103487316|ref|YP_616877.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977393|gb|ABF53544.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 610

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 256/577 (44%), Positives = 359/577 (62%), Gaps = 8/577 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE++  V+ +AL+ RGY  LT VQ  +   + + +D+LVSAQTGSGKTVAFGLA+A  L+
Sbjct: 3   FEHLSPVLADALAARGYEALTPVQLQVTEAEAKGRDLLVSAQTGSGKTVAFGLAMADELI 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E+ R   A++PLAL +APTRELA+QV REL WLYA+ G  +A C+GG+   +ERR L  
Sbjct: 63  -EDGRLPFATSPLALIVAPTRELALQVSRELGWLYARAGARIATCVGGMDASKERRALNQ 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL DH+    L+++ L+  VLDEADEMLD+GFRDD+E ILD++P+ RR L
Sbjct: 122 GVQIVVGTPGRLRDHLERGALDLAALRVAVLDEADEMLDMGFRDDLEEILDATPETRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   I  LAK YQ+DA+R++   E+R H DI Y+AV VA +D + A+VN+LR H 
Sbjct: 182 LFSATIPKPIVQLAKRYQRDALRISTVGEDRGHGDIAYQAVTVAPADIEGAVVNLLRLHD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ A++FC+TR +V R    L E  F  VALSGE SQ ER+ ALQ +RD RA+VC+ATDV
Sbjct: 242 AETAMLFCATRDNVRRLHASLVERGFAAVALSGEHSQNERNQALQALRDRRAKVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIH E+  + E L HRSGRTGRAG+KG +V ++P   +RR + + R A
Sbjct: 302 AARGIDLPTLSLVIHVEIPRDAEALQHRSGRTGRAGKKGTAVIIVPYPRRRRVDGMLRGA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            ++  W  AP+   +R++D +R+++  L     + ++  +   L+A+  PE IAA  +R 
Sbjct: 362 RINAEWMDAPTAADVRQKDQERLIEKLLAPVEHEPEDLALAQRLMAERTPEDIAASLVRA 421

Query: 424 HRAGLCAPEEITPVSLV----SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           HRA +  PE++          +GR    +     + GG  R+ F+ + WF L++G  Q A
Sbjct: 422 HRALMPPPEDLLDNGPRGRDATGRPERGERFERPERGGDRREGFEDAVWFRLNIGRHQNA 481

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           + RW++P+LCR   +++  IGAIR+ P  T   +     D     V        +   G 
Sbjct: 482 DPRWILPLLCRRGHVSKNEIGAIRIGPKETMFNIPRAIADRFAEAVVRTANQDGEDDSGV 541

Query: 540 K--PDFRGYKSSGFKSKNSQDGATKR-FKRFKGASKN 573
              P   G      + K S D A +    R  G  ++
Sbjct: 542 AITPAPDGPTWPPRRDKGSGDRAPRSTLGRAPGGERS 578


>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
 gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           NM305]
          Length = 604

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 164/552 (29%), Positives = 276/552 (50%), Gaps = 23/552 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L + +
Sbjct: 7   TFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  E         P  L +APTRELA+QV    E       G+      GG     + R
Sbjct: 67  QIDPEQ------RHPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NGA +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+ 
Sbjct: 121 ALKNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPED 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIQASQRSAPDIAQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+       ++   + ++  AL+G+++QQ R  AL  ++ GR  + +
Sbjct: 241 EVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E + E+   +    ++  L    ++   + + D+  A  D E++
Sbjct: 361 EHLIKKPIDEVAIPNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKG--SSWFS 470
           AA  + +   +  L  P +    +    R + R++ R    +  G    +  G     + 
Sbjct: 421 AAAMMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTV 525
           + +G +   E R ++  +     IN + IG I++    + +E+       L     ++  
Sbjct: 481 IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR 540

Query: 526 KLDKGIQLKYLG 537
            L K +Q+ +LG
Sbjct: 541 VLSKPMQMSFLG 552


>gi|238897556|ref|YP_002923235.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465313|gb|ACQ67087.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 598

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 166/553 (30%), Positives = 259/553 (46%), Gaps = 29/553 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +Q   +   L   DVL  AQTGSGKT AFGL L   +  + 
Sbjct: 14  LSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAAFGLPLLQNIKPD- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELAVQV + L         +  +   GG   H + + L+ G 
Sbjct: 73  -----IKAPQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGGQPYHVQLKALRQGP 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL DH++   LN+S L  +VLDEADEML +GF +D+E IL   P + +  +F
Sbjct: 128 QIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPAEHQTALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + + + K+   V I S      DI+     V    ++ A+V  L      
Sbjct: 188 SATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQALVRFLEVEDFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+ +     + L +  +   AL+G+++Q  R   L+ ++DGR  + IATDVAA
Sbjct: 248 AAIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLDILIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R    
Sbjct: 308 RGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLKNIERVIKQ 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAG 419
            +     P  E + +R  ++          I+  + +M   LL K       D E IAA 
Sbjct: 368 PIPEIQLPKAELLSQRRLEKFAA--TVRQHIESSDLEMYKTLLKKLRPEEPFDLEMIAAA 425

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR----------DRFRDDSRAFKVGGGSRDNFKGSSWF 469
            L++ ++         PV                 R      + +     R +      +
Sbjct: 426 LLKMAQSERPLILPPDPVRSARRECHEREVRSTHRRRDYRDSSERPSYRERRDIGEMQLY 485

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTV 525
            + VG     E R ++  +     I+ + IG I + P  + +E+  +     V    RT 
Sbjct: 486 RIEVGRNDGVEIRHIVGAIANEGDISSRYIGNISLFPSHSTIELPKEMHKNIVSHCTRTH 545

Query: 526 KLDKGIQLKYLGG 538
            L+K I +K LG 
Sbjct: 546 ILNKPINIKLLGD 558


>gi|257464721|ref|ZP_05629092.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
 gi|257450381|gb|EEV24424.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
           202]
          Length = 604

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 164/552 (29%), Positives = 276/552 (50%), Gaps = 23/552 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A++E G+V  + +Q+A +   L  +DVL  AQTGSGKT AF L + +
Sbjct: 7   TFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAFSLPILA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +  E         P  L +APTRELA+QV    E       G+      GG     + R
Sbjct: 67  QIDPEQ------RYPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NGA +VVGTPGR+ DHIR   L++S LKA+VLDEADEML +GF +D+E ++   P+ 
Sbjct: 121 ALKNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+       ++   + ++  AL+G+++QQ R  AL  ++ GR  + +
Sbjct: 241 EVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E + E+   +    ++  L    ++   + + D+  A  D E++
Sbjct: 361 EHLIKKPIDEVAIPNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKG--SSWFS 470
           AA  + +   +  L  P +    +    R + R++ R    +  G    +  G     + 
Sbjct: 421 AAAMMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYR 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTV 525
           + +G +   E R ++  +     IN + IG I++    + +E+       L     ++  
Sbjct: 481 IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR 540

Query: 526 KLDKGIQLKYLG 537
            L K +Q+ +LG
Sbjct: 541 VLSKPMQMSFLG 552


>gi|116671594|ref|YP_832527.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611703|gb|ABK04427.1| ATP-dependent RNA helicase CsdA [Arthrobacter sp. FB24]
          Length = 747

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 152/554 (27%), Positives = 267/554 (48%), Gaps = 15/554 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   
Sbjct: 101 VLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNG 160

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
           P+    AL +APTRELA+QV                +   GG +   +   L+ GA +VV
Sbjct: 161 PSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVV 220

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P  R++ +FSAT+
Sbjct: 221 GTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATM 280

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I 
Sbjct: 281 PSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDALTRILEVEEFDGVIA 340

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D
Sbjct: 341 FVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLD 400

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     + +     V  
Sbjct: 401 VERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQ 460

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFLRI 423
              P+ E +      +  +     +++  ++      L++ ++ E      +IAA    +
Sbjct: 461 MHLPTAETVNTLRLGKFAER--ITETLASEDVAPFRDLISSYEEEHNVPASEIAAALAIM 518

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G     +  P +    +     D   F   G +R   +G++ + ++VG +Q+     
Sbjct: 519 AQGGQPLLVKELPAAPEFQKRERSKD--GFGSRGPTRTLTEGNATYRIAVGRRQRVMPGS 576

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGGE 539
           ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+   G 
Sbjct: 577 IVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELDNGR 636

Query: 540 KPDFRGYKSSGFKS 553
           KP     +  G++ 
Sbjct: 637 KPSGGAGERGGYQG 650


>gi|15614947|ref|NP_243250.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10175004|dbj|BAB06103.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 539

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 157/553 (28%), Positives = 269/553 (48%), Gaps = 36/553 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+ E G+   + +Q   +   L   DV+  AQTG+GKT AFG+ +         +
Sbjct: 15  EEIKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVVE-------K 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S      AL + PTRELA+QV  E++ L     +      GG S+  + + L+ G  +V
Sbjct: 68  VSTGRHVQALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGVQVV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGR+ DH+R K L + H+  V+LDEADEMLD+GF DDIE IL     +R+ L+FSAT
Sbjct: 128 IGTPGRIIDHLRRKTLILDHVNTVILDEADEMLDMGFIDDIESILRQVKNERQTLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  L++ Y  D   V+I         ID     V   ++ +++  I+        I
Sbjct: 188 MPPAIKKLSRKYMNDPQTVSINRREVTAPSIDQFYYKVLERNKLDSLCRIIDSEQIDLGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      IATDVAARGI
Sbjct: 248 LFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMRKFRDSSIEFLIATDVAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ ++     +    + +E  +S+ 
Sbjct: 308 DVGNVSHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIEQEIKMSIP 367

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKHDPEKIAAGFLRIH 424
            +  P++E + E+  +   +          ++K + + +    +A++D +++ +  L+++
Sbjct: 368 SQEVPTIEDVVEKQKESWKKQIAHRIEKGSNQKHLFEQMTEELMAEYDSKEVISALLQLN 427

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            A   APE+                        G     KG   F ++VG       + L
Sbjct: 428 YAMDTAPED-------------------AGYSFGETGGAKGMVRFFINVGRNVNMSPKIL 468

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
           +  +    GI  ++IG I +    TFVEV  +    +   ++  +      + G + +  
Sbjct: 469 VEEIAELVGIPGKAIGRIDIFEKFTFVEVPEEVAPFVYEALRYSR------INGARVNLE 522

Query: 545 GYKSSGFKSKNSQ 557
             K    +    +
Sbjct: 523 PAKPRPKRESQRR 535


>gi|254694921|ref|ZP_05156749.1| ATP-dependent RNA helicase DeaD [Brucella abortus bv. 3 str. Tulya]
 gi|261215256|ref|ZP_05929537.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260916863|gb|EEX83724.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 534

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 259/534 (48%), Positives = 359/534 (67%), Gaps = 15/534 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPTLSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---------------SRDNFKG 465
           L    A   A EE++   +     +     R  K                    R+    
Sbjct: 421 LNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFD 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
             WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A   D
Sbjct: 481 GVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAASKAD 534


>gi|255326780|ref|ZP_05367856.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
 gi|255295997|gb|EET75338.1| cold-shock DEAD box protein A [Rothia mucilaginosa ATCC 25296]
          Length = 744

 Score =  320 bits (819), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 166/611 (27%), Positives = 275/611 (45%), Gaps = 46/611 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY   + +QE  +   L   DV+  AQTG+GKT AF L   S +    
Sbjct: 73  LDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELA 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    +     L +APTRELA+QV                +   GG     +   L+ GA
Sbjct: 133 DVNGISRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGA 192

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +F
Sbjct: 193 QVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALF 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ Y  D   + + ++    ++I  R + V  S + +A+  +L      
Sbjct: 253 SATMPNSIRKIAQQYLNDPTEIRVKAKTTTSANISQRYMQVMHSHKLDAMTRVLEVENYD 312

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+         L    F   A++G++ QQ R   +  +RDGR  + +ATDVAA
Sbjct: 313 GIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAA 372

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR+G ++  +    +    ++ +    
Sbjct: 373 RGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQ 432

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG 419
            V     P+ EA+ E   QR  Q     ++I+ ++    +++++    +HD   E IAA 
Sbjct: 433 KVEPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAA 490

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
              I + G     + +       R    +DS           N +G   + L+VG   + 
Sbjct: 491 LAVIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRAHNDEGMVNYKLNVGRSSRV 550

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKY 535
            A  ++  L    GI    IG+I ++   T V    ++  D  D LR T    + I ++ 
Sbjct: 551 TAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKIAGEFINIRK 610

Query: 536 LG------------------------------GEKPDFRGYKSSGFKSKNSQDGATKRFK 565
                                           G + + R     G +      G  + FK
Sbjct: 611 DNGPKGGGGGRGFGGGRREGGYRGNREDGRDFGGRDNRREGGYRGNREGGRDFGGDRDFK 670

Query: 566 RFK---GASKN 573
           R     G  +N
Sbjct: 671 RGGRDFGGKRN 681


>gi|84498694|ref|ZP_00997447.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84381031|gb|EAP96918.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 601

 Score =  320 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 166/586 (28%), Positives = 278/586 (47%), Gaps = 42/586 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + +  AL + GY   + +Q A +   L  + V+  AQTG+GKT AF L + 
Sbjct: 21  TTFSDLGLDERVLRALKDVGYETPSPIQAATIPALLAGRHVVGLAQTGTGKTAAFALPIL 80

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S L  +         P AL +APTRELA+QV    E   ++   V  +   GG +   + 
Sbjct: 81  SRLDLKQ------KTPQALVLAPTRELALQVCEAFEKYASRMPGVHVLPVYGGQAYGVQL 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVVGTPGR+ DH+    L++S L+ +VLDEADEML +GF +D+E IL  +P 
Sbjct: 135 SALRRGVHIVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPA 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ + +FSAT+   I  ++K Y  DA+ + +        +I  R +  +   + +A+  I
Sbjct: 195 EKHVALFSATMPSQIRRISKKYLTDALEITVERTTETAPNITQRYLFCSYPQKIDALTRI 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVF  T+       + L    F   A++G+++Q +R   +  ++ G+  + 
Sbjct: 255 LEVENFEGMIVFVRTKNETEMLAEKLRARGFSATAINGDIAQNQRERTVAQLKSGKLDIL 314

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +   + 
Sbjct: 315 VATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPREKYLLKA 374

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHD--P 413
           + +    ++     PSVE I      R   D +       D    + ++   +  HD   
Sbjct: 375 IEKATKTTLTEMQLPSVEDINATRLGRF-DDRITTALASSDIDAFRDVIAHYVRNHDVPE 433

Query: 414 EKIAAGFLRIHRAG---LCAPEEITPVSLVS--------------GRDRFRDDSRAFKVG 456
             +AA    + +     L  P+ + P                    R   R  SR  K G
Sbjct: 434 ADVAAALAIVLQGDEPMLLGPDPVRPPRRERDSGAQGGRDFSDRGPRRDDRGGSRFDKGG 493

Query: 457 GGSRDNFKG----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            G R   +G     + + ++VG + K E R ++  L    G+ RQ  G I ++ D + VE
Sbjct: 494 SGERPARRGSNVPMATYKIAVGRRHKVEPRQIVGALANEGGLGRQDFGHIDIRADHSLVE 553

Query: 513 VSADGV----DLLRRTVKLDKGIQLKY--LGGEKPDFRGYKSSGFK 552
           + A       DLLR T    + I+L      G +PD + ++  G +
Sbjct: 554 LPATLPAGTWDLLRTTRISGQLIELTESSERGGRPDKKPHRKGGPR 599


>gi|94676631|ref|YP_589051.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219781|gb|ABF13940.1| inducible ATP-independent RNA helicase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 591

 Score =  320 bits (818), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 160/560 (28%), Positives = 266/560 (47%), Gaps = 30/560 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++  AL + GY   + +Q   +   L  +DVL  AQTGSGKT AF L L   +  +    
Sbjct: 16  LLLNALKDLGYETPSPIQAECIPHLLAGRDVLGIAQTGSGKTAAFALPLLHNINLK---- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIV 128
              +AP  L +APTRELAVQV             +  V   GG     + R L+ G+ ++
Sbjct: 72  --LNAPQVLVLAPTRELAVQVSEAYSDFAKYMKGINVVALYGGQRYDVQLRLLRQGSQVI 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL DH++   L++SHL  +VLDEADEML +GF +D+E IL   P K +  +FSAT
Sbjct: 130 VGTPGRLLDHLKRGTLDLSHLHGLVLDEADEMLRMGFIEDVENILAQIPAKHQTALFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  + + +  +   V+I S      DI      V    ++ A+   L       AI
Sbjct: 190 MPEAIRRITRRFMTEPKEVHIESNIANRPDISQSYWTVHGRCKNKALARFLEVEDFDAAI 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+ +    ++ L ++ +   AL+G+++Q  R   L  +++G   V IATDVAARG+
Sbjct: 250 IFVRTKNATLEVSQSLEQNGYNSAALNGDMNQALREQTLSRLKNGSLDVLIATDVAARGL 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  + Q  +R    + R   +++ 
Sbjct: 310 DVDRISLVVNYDIPLDSESYIHRIGRTGRAGRAGRALLFVEQRERRLLRNIERLMKLNIP 369

Query: 369 WEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAK---HDPEKIAAGFLR 422
               P+ E +  R  +++   +++ L    I    + +  +   +    D E +AA  L+
Sbjct: 370 EVQLPTAEKLNTRRLEKLAVKIKNHLKNRDIGMYREMLTRLQQTEKLDIDIETLAAVLLK 429

Query: 423 IH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           +    R  + +PE +    L S   R+ +  R          +      + + VG     
Sbjct: 430 MAHGQRPLILSPEPVIERRLHSNSRRYNNRER---------IDVSKMDLYRIEVGRNDGV 480

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKY 535
           E R ++  +     IN   IG I++    + +E+        +    RT  ++K I L+ 
Sbjct: 481 EVRHIVGAIANEGDINSSYIGNIKLFASHSTIELPKGIPGXILSHFTRTRIMNKPINLQL 540

Query: 536 LGGEKPDFRGYKSSGFKSKN 555
              E    R  +  G +  N
Sbjct: 541 F-DEASSARCVERYGIRRSN 559


>gi|292486843|ref|YP_003529713.1| cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|292900759|ref|YP_003540128.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200607|emb|CBJ47739.1| ATP-dependent RNA helicase (cold-shock dead-box protein) [Erwinia
           amylovora ATCC 49946]
 gi|291552260|emb|CBA19297.1| Cold-shock DEAD box protein A [Erwinia amylovora CFBP1430]
 gi|312170911|emb|CBX79170.1| Cold-shock DEAD box protein A [Erwinia amylovora ATCC BAA-2158]
          Length = 638

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 157/574 (27%), Positives = 261/574 (45%), Gaps = 42/574 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+   
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGR-KTDALTRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  + +    LL+K  PE    
Sbjct: 359 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLSKMQPEDELD 416

Query: 416 ---IAAGFLRIHRAGLC--------------------APEEITPVSLVSGRDRFRDDSRA 452
              +AA  L++ +                          ++        G    R ++R 
Sbjct: 417 IETLAAALLKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEARE 476

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  R +      + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 477 GDRPRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIE 536

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +      D +    RT  L+K + ++ +G  +P 
Sbjct: 537 LPKGMPGDVLQHFTRTRILNKPMNMQLIGDAQPR 570


>gi|94501919|ref|ZP_01308429.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94425972|gb|EAT10970.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 614

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 162/599 (27%), Positives = 277/599 (46%), Gaps = 40/599 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+ E+GY   + +QE  +   L  KDVL  AQTG+GKT AF L L +    E 
Sbjct: 13  LPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAFTLPLLARTQNE- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA QV   +E      + V VA   GG     + R L+ G 
Sbjct: 72  -----VREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFRALKQGP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             VVGTPGR+ DHIR   L +  ++AVVLDEADEML +GF DD++++LD  P+KR++ +F
Sbjct: 127 QWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEKRQIALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ + ++   + I S+   +  I+ +  LV   D++ A++ I       
Sbjct: 187 SATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRICETSEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ +       +  H  +  AL+G+++Q +R  A+  ++ G+  + +ATDVAA
Sbjct: 247 AMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R    
Sbjct: 307 RGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTIERVTRK 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH---DPEKIAA 418
            +     P+ + +  +   +       L+ I+G +    KK+   +LA+    DP ++AA
Sbjct: 367 KIQQIELPTAKEVNAKRRDQF--KVRALEHIEGRDIEIFKKIASEILAEQPALDPIELAA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG------------- 465
            F ++ +       + +        DR     R  +     R+  K              
Sbjct: 425 AFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERRNNSGREERKPIELEAMPLKDFPD 484

Query: 466 --SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
                + L+VG K   +   ++  +   + I  + IG I +      V++      + + 
Sbjct: 485 VEMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASVDLPSGMPEETLT 544

Query: 520 LLRRTVKLDKGIQLKYL-----GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L++     + I ++ L     GG +   R  K      K   +    +     G  K 
Sbjct: 545 HLKKARVCGRPINIEPLKNRGAGGGQKPRRNAKGGNKGKKPQGERGQNKGGAKSGKPKR 603


>gi|134102495|ref|YP_001108156.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004114|ref|ZP_06562087.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915118|emb|CAM05231.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 578

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 281/582 (48%), Gaps = 20/582 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++   + + LSE GY   + +Q   + P L   DV+  AQTG+GKT AF L +
Sbjct: 1   MPSFDELDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            S L  +      A  P AL +APTRELA+QV    +   A       +   GG S   +
Sbjct: 61  LSRLDLD------AKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ GAH+VVGTPGR+ DH+    L+++ LK +VLDEADEML +GF +D+E IL S P
Sbjct: 115 LAGLKRGAHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R++ +FSAT+ P I  ++++Y  + V +++ ++    ++I  R + V    + +A+  
Sbjct: 175 EQRQVALFSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL        IVF  T+       + L    F   A++G++ Q  R   +  +R+GR  +
Sbjct: 235 ILEVETFDAMIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    
Sbjct: 295 LVATDVAARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +    S+     PS+EA+ ++   +  Q     D++   + ++   L+ +++     
Sbjct: 355 SIEKATRQSIGQMELPSIEAVNDQRLAKFAQ--GITDTLAKGDLELFKGLVEEYERTHDV 412

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS--RDNFKGSSWFSLSVGS 475
                          +     L+  R+   + +R  + GG +  +     +  + + VG 
Sbjct: 413 PAAEIAAALASMVQGDQP---LLMEREPEPEPNRRGRDGGAAKFQPTSSDTETYRVEVGR 469

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGI 531
           + +     L+  L    G+  + IG I ++   T +E+ AD  D     LR+T    +G+
Sbjct: 470 RNRVTPSALVGALANEGGLPSKHIGHIDIRDGHTLIELPADLPDDMLRKLRKTQVAGRGL 529

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           ++    GE    R +     K +  + G          A K 
Sbjct: 530 RISLADGEFVARRPHGPGRDKPRPHRKGQRSPGSSRAVAGKR 571


>gi|164687595|ref|ZP_02211623.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
 gi|164603369|gb|EDQ96834.1| hypothetical protein CLOBAR_01236 [Clostridium bartlettii DSM
           16795]
          Length = 541

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 154/533 (28%), Positives = 262/533 (49%), Gaps = 20/533 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++P    I  +++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +
Sbjct: 3   ITKFEDLPISDEIKRSIAEIGFEEPSPIQAQSIPVILSGKDVIGQAQTGTGKTAAFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              +   N          A+ + PTRELA+QV +E+  L    +G+      GG  + R+
Sbjct: 63  LEKVDPNN------KHLQAIVLCPTRELAIQVSKEIRKLGKFKSGIKTLPVYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  +V+GTPGR+ DHI  K L +  +K VVLDEADEMLD+GFR+DIE IL+ +P
Sbjct: 117 IKALKSGVQVVIGTPGRVIDHINRKTLKLDDVKMVVLDEADEMLDMGFREDIELILNQTP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+   FSAT+   I  L K YQ +   + +  +     +I    +    +++   +  
Sbjct: 177 IERQTTFFSATMPKEILELTKLYQHEPEIIKVVRKELTVPNIKQFYIETRRANKLEVLCR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K ++VFC+T+         L    +   AL G+L Q +R   +   R G   +
Sbjct: 237 LIDVYNPKLSVVFCNTKRGSDELVSELQARGYFADALHGDLKQTQRDIVMDKFRQGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+++V + +L  + E  +HR GRTGRAGR+G+S   +     R+  
Sbjct: 297 LVATDVAARGIDVDDVDMVFNYDLPQDEEYYVHRIGRTGRAGREGVSFSFVYGKEMRKMR 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKH--DP 413
            + R     +V    P++  + E+      +       +S    +   V+ L  +     
Sbjct: 357 DIERYTKCKLVKHSIPTIADVEEKKVAAFFKQVKDTVNESNLAKQINWVEALCEEQELST 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            ++AA  +++        E I   S    R       ++ K   GS    +G     ++V
Sbjct: 417 LEVAAALVKLAMGEELKEEIIEEPSRKEAR-------KSKKAKKGSTGAERGMVRLFINV 469

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G KQ+ +A+ ++  +   +GI+ + +G I +    TFVEV       +   +K
Sbjct: 470 GRKQRVQAKDIVGAIAGEAGISGKLVGTIDIYDKYTFVEVPKANAKKVLEKLK 522


>gi|310766260|gb|ADP11210.1| ATP-dependent RNA helicase DeaD [Erwinia sp. Ejp617]
          Length = 638

 Score =  319 bits (817), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 159/586 (27%), Positives = 263/586 (44%), Gaps = 44/586 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+   
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGR-KTDALTRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  + +    LL+K  PE    
Sbjct: 359 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLSKMQPEDELD 416

Query: 416 ---IAAGFLRIHRAGLC--------------------APEEITPVSLVSGRDRFRDDSRA 452
              +AA  L++ +                          ++        G    R ++R 
Sbjct: 417 IETLAAALLKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEARD 476

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  R +      + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 477 GDRPRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIE 536

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK 554
           +      D +    RT  L+K + ++ +G  +P  R     G +  
Sbjct: 537 LPKGMPGDVLQHFTRTRILNKPMNMQLIGDAQP--RSNVGGGERRP 580


>gi|260903903|ref|ZP_05912225.1| DEAD/DEAH box helicase domain-containing protein [Brevibacterium
           linens BL2]
          Length = 606

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 163/578 (28%), Positives = 271/578 (46%), Gaps = 18/578 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +A+  +GY   T +Q   +   +  +DV+  AQTG+GKT AF L   S L    
Sbjct: 20  LHPLVLQAVQAQGYETPTPIQAETIPALVEGRDVIGLAQTGTGKTAAFALPALSDL---A 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           +       P AL + PTRELA+QV                +   GG +   +   L+ GA
Sbjct: 77  EAGRANDGPFALVLTPTRELAIQVAEAFTSYATNLDDFSVLPIYGGQAYGPQLSGLKRGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++   L +  L+ ++LDEADEML +GF +DIE I   S   R++ +F
Sbjct: 137 QVVVGTPGRVIDHLKKGSLKLGSLRHLILDEADEMLKMGFAEDIEEIFSQSGDSRQVALF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L   Y  +   V +AS+++  S+I  R  +V  S + +A+  IL     +
Sbjct: 197 SATMPTSIHRLTGKYLNNPKEVRVASKSQTGSNIRQRYHMVQHSHKLDALTRILEVEEYE 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L    F+  A++G++ QQ R   + M+R+G+  + +ATDVAA
Sbjct: 257 GIIMFVRTKQATEELAEKLRARGFKASAINGDIPQQARERTIDMLRNGKVDILVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    QR    + R    
Sbjct: 317 RGLDVERITLVVNFDIPHDTESYVHRIGRTGRAGRSGEAILFVTPREQRLLGSIERATKQ 376

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIAAGF- 420
            V     PSVE +     ++    + D L    +      +    L+++ P   IAA   
Sbjct: 377 KVEQLKMPSVEELTNTRVEKFTKRIDDVLATTELTELATVIEQYELSRNVPATDIAAALA 436

Query: 421 -LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-FKVGGGSRDNFKGSSWFSLSVGSKQK 478
            L +    L A     P     GRDR              SR   +  + + L++G  ++
Sbjct: 437 SLVLESNTLKADPMPEPSRGKPGRDRDSGGRDGKPGRERSSRPRDENMTTYRLAIGRNER 496

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLK 534
            +   ++  +    G+  + IG I ++ + T V++  D    + R    T    + I ++
Sbjct: 497 LQPGAVVGAIANEGGLTSKEIGHIDIRSNHTLVDLPKDLDSSVMRKLSNTQIQGRPIDIR 556

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              G     R +K   F  +   D    R  R  GA K
Sbjct: 557 PDSGRP--ARPFKKRNFDKQPG-DSRNFRNDRRGGAKK 591


>gi|283457475|ref|YP_003362053.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133468|dbj|BAI64233.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 732

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 168/609 (27%), Positives = 275/609 (45%), Gaps = 44/609 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY   + +QE  +   L   DV+  AQTG+GKT AF L   S +    
Sbjct: 68  LDARVLAALEEVGYEKPSPIQEQTIPLLLEGHDVVGLAQTGTGKTAAFALPALSRMAELA 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    +     L +APTRELA+QV                +   GG     +   L+ GA
Sbjct: 128 DINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGA 187

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +F
Sbjct: 188 QVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVEKILEGTPDSKQVALF 247

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ Y  D   V + ++    S+I  R + V  S + +A+  +L      
Sbjct: 248 SATMPNSIRKIAQQYLNDPREVRVKAKTTTSSNISQRYMQVMHSHKLDAMTRVLEVENYD 307

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+         L    F   A++G++ QQ R   +  +RDGR  + +ATDVAA
Sbjct: 308 GIIVFVRTKKETEEVADKLKARGFAAAAINGDIPQQLRERTVDALRDGRIDILVATDVAA 367

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR+G ++  +    +    ++ +    
Sbjct: 368 RGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGREGAAILFVTPREKYMLRQIEKATRQ 427

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG 419
            V     P+ EA+ E   QR  Q     ++I+ ++    +++++    +HD   E IAA 
Sbjct: 428 KVEPMHMPTAEAVNETRKQRFAQQ--ITETIESEDLSFFRQIIEDYENEHDTTAEDIAAA 485

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
              I + G     + +       R    +DS           N +G   + L+VG   + 
Sbjct: 486 LAVIAQQGRPFFLDESEDIAHKSRPFSDEDSDRGGRKAKRAHNDEGMVNYKLNVGRSSRV 545

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKY 535
            A  ++  L    GI    IG+I ++   T V    ++  D  D LR T    + I ++ 
Sbjct: 546 TAGAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPRDFFDRLRDTKIAGEFINIRK 605

Query: 536 LG------------------------------GEKPDFRGYKSSGFKSKNSQDGATKRFK 565
                                           G + + R     G +      G  + FK
Sbjct: 606 DNGPKGGGGGRGFGGGRREGGYRGNREGGRDFGGRDNRREGGYRGNRDGGRDFGGDRDFK 665

Query: 566 RFK-GASKN 573
           R   G  +N
Sbjct: 666 RRDFGGKRN 674


>gi|304320267|ref|YP_003853910.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
 gi|303299169|gb|ADM08768.1| hypothetical protein PB2503_03462 [Parvularcula bermudensis
           HTCC2503]
          Length = 623

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 274/575 (47%), Positives = 366/575 (63%), Gaps = 25/575 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P  +  AL+ +GY +LT VQ A+L+  +  +D+LVSAQTGSGKTVAFGLA+   L+ 
Sbjct: 8   SGLPAPLSRALTAKGYDSLTEVQSAMLDEGVSGRDLLVSAQTGSGKTVAFGLAMGPDLMR 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              R      PLAL +APTRELA+QV RE+ WLYA+TG  VA C+GG+ + RER+ L  G
Sbjct: 68  GQARLPRGGVPLALVVAPTRELAMQVAREITWLYAETGATVATCVGGMDLRRERQALDRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGRL DHI    L++S L+  +LDEADEML LGFR ++E ILD+  + RR LM
Sbjct: 128 AHIVVGTPGRLVDHISRDALDLSALRVAILDEADEMLKLGFRQELEAILDACAEDRRTLM 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA  YQ+DA+R++ +   R H DI Y+A++ +  D + AI+N LR+H A
Sbjct: 188 FSATVGGGIGKLAAQYQRDALRISASGPARSHDDIAYKAMVTSQHDAEKAIINTLRFHEA 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +NAIVFC TRA+V+R T  LA   F VV+LSGELSQQER+NALQ MRDGRARVC+ATDVA
Sbjct: 248 ENAIVFCGTRAAVARLTSRLANRGFSVVSLSGELSQQERTNALQAMRDGRARVCVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLP LELVIHA+L  + E LLHRSGRTGRAGRKG SV V+P   +RR E+LFR+A 
Sbjct: 308 ARGIDLPGLELVIHADLPKDREGLLHRSGRTGRAGRKGTSVLVVPPRARRRVEQLFRDAK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           V   W   PS EA+  RD  R+L DP+  +  + D   +   L   +  E +A  F+R+H
Sbjct: 368 VDADWIAPPSAEAVLARDDARLLSDPILNEGGEAD--SLAQTLAEAYSAEHLAGAFIRLH 425

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           R    APEEI+ +++V    +                     +W  LSVG   +AE RWL
Sbjct: 426 RQNRSAPEEISELAVVPPGVKKGR------------TETTDGAWVMLSVGRAHRAEPRWL 473

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKGIQLKYLGGEK 540
           +PMLC+S+ + + SIGAIRV+   T+V++  +G      ++     L+ GI+++   G  
Sbjct: 474 LPMLCKSAPVPKGSIGAIRVRETETYVQLDKEGAADFLNSLGTVGYLEDGIEVRRTDGP- 532

Query: 541 PDFRGYKS------SGFKSKNSQDGATKRFKRFKG 569
           PD  G +          K +  +DG ++  + F  
Sbjct: 533 PDKEGPREAAVPVTRPRKGRTQRDGQSRSTESFDP 567


>gi|167646147|ref|YP_001683810.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167348577|gb|ABZ71312.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 776

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 267/588 (45%), Positives = 362/588 (61%), Gaps = 22/588 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
              +  AL+ +GY+  T VQ A+L  +   +D+LVSAQTGSGKTVAFGLA A+TLL + +
Sbjct: 7   HPALERALAAQGYLEPTPVQAAVLEDEAIGRDLLVSAQTGSGKTVAFGLAAATTLLGDAE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +F+ A  P+ L IAPTRELA+QV REL WLYA  G VV  C+GG+   RE+R L  GAHI
Sbjct: 67  KFAKAGLPMCLVIAPTRELAIQVNRELAWLYADAGAVVVNCVGGMDARREQRALNFGAHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSA
Sbjct: 127 VVGTPGRLRDHIERGHLDLSELKVAVLDEADEMLDMGFREDLEFILDAAPSERRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  I  LAK+YQ DA+R++    N  H DI+YRAV VA ++ ++A+VN+LRY  +  A
Sbjct: 187 TLAREIVQLAKSYQNDALRIDTVGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRYFESPGA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC+TR SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG
Sbjct: 247 LVFCNTRESVRALHSKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +DLPDL LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V  
Sbjct: 307 LDLPDLGLVIHAELPVNKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLMAAGVEG 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            W  AP+ + IR +D +R+L DP+F +++  ++  + + +LAK  P +IAA  +R  RA 
Sbjct: 367 HWGGAPTADEIRLKDTERLLDDPIFDEAVVEEDTALAEAMLAKRTPLEIAAALIRTRRAK 426

Query: 428 LCAPEEI----------TPVSLVSGR----------DRFRDDSRAFKVGGGSRDNFKGSS 467
           L APEEI           P S  +G           DR   D    +     R +   S+
Sbjct: 427 LPAPEEIYDDPRHGADPGPRSRDAGPRSNDAGDRFADRGPRDFGGDRPEREPRSDMANSA 486

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
           WF L+ G +  A+ +WL+P++CR   I ++ IG+IR+    T  E+SA+        V+ 
Sbjct: 487 WFRLNTGRRNNADPKWLIPLICRLGHITKKDIGSIRIFDYDTKFEISAEAEVKFGAAVQA 546

Query: 528 DKGIQLKYLGGEKPDFRG--YKSSGFKSKNSQDGATKRFKRFKGASKN 573
                +       P  R        +  +  +D      + +      
Sbjct: 547 TVRDDVTITPTTAPAARDASGPRKDYAPRPPRDDNDAPRREYAPRPPR 594


>gi|169628494|ref|YP_001702143.1| cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase
           DEAD homolog) [Mycobacterium abscessus ATCC 19977]
 gi|169240461|emb|CAM61489.1| Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA
           helicase DEAD homolog) [Mycobacterium abscessus]
          Length = 598

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 164/587 (27%), Positives = 276/587 (47%), Gaps = 30/587 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+S+ GY   +++Q A + P L   DV+  AQTG+GKT AF + + S
Sbjct: 24  TFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGLAQTGTGKTAAFAIPILS 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +   +          AL +APTRELA+QV        A    +  +   GG S   +  
Sbjct: 84  KIDLTSKD------TQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPIYGGQSYVVQLA 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ 
Sbjct: 138 GLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAEDVERILADTPEY 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  L K Y  D V + I ++     +I  R + VA   + +A+  IL
Sbjct: 198 KQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAGPRKMDALTRIL 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +       L    F   A++G+++Q +R   +  ++ G   + +
Sbjct: 258 EVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTINALKAGTIDILV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G +V  +    +   + +
Sbjct: 318 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFVSPRERHLLKAI 377

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            +     +  EP PSVE +  +   +         ++   E ++   L+  ++ +     
Sbjct: 378 EKTTGAKLAEEPLPSVEDVNAQRVTKFRD--AITAALAAPEVELFRRLVEDYERDNNVPV 435

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA    + R G     +  P        R     R  +   G R    G + + ++V
Sbjct: 436 ADIAAALAVLSRDGEQFLLQPDPPREP----RHERGERPDRGPRGERPRTPGLATYRIAV 491

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDK 529
           G + K     ++  +    G++R   G I ++PD + VE+ A      +  L  T     
Sbjct: 492 GKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTLKALENTRISGV 551

Query: 530 GIQLKYLGGE---KPDFR--GYKSSGFKSKNSQDGATKRFKRFKGAS 571
            I L+  GG    +PD +    + +  K  + +    KR KR     
Sbjct: 552 LIDLRPAGGPDGARPDRKYTERRRADHKHSDHKRSEAKRPKRAPKKP 598


>gi|226312984|ref|YP_002772878.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095932|dbj|BAH44374.1| probable ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 529

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 179/558 (32%), Positives = 278/558 (49%), Gaps = 38/558 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M IF + P  + I +A+ + G+   + +Q A +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MTIFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +PA+   A+ + PTRELA+QV  EL  +     V      GG S+  + 
Sbjct: 61  VEKI-------TPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGR+ DH+R K L + H+  +VLDEADEMLD+GF +DIE I++  P 
Sbjct: 114 RALRQGVQIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIINHMPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  LA  Y K    + ++ E      I+     V   ++  ++  I
Sbjct: 174 ERQTLLFSATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+FC T+  V   ++VL    +    L G+LSQ +R   +   R+G     
Sbjct: 234 LDSEDVELGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRAGRKG+++ ++     R+   
Sbjct: 294 IATDVAARGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMF 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + ++    V+    PS+E + ER  +++   L   L  D+I    +K+ D L+ ++  EK
Sbjct: 354 IQKQTKAQVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVADALVGQYPAEK 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +                       ++          A     G     KG   F L+VG 
Sbjct: 414 V-----------------AAAALHLAFHTEAGQGQEAEAYNFGETGAAKGMVRFFLNVGR 456

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGI 531
               + + L+  +  S GI  +S+G I +    TFVEV  +      + LR+T    K I
Sbjct: 457 NANMKPQDLVREISESVGIPGKSVGRIDIFESFTFVEVPEEVAAFVYESLRQTRINGKRI 516

Query: 532 QLKYLGGEKPDFRGYKSS 549
            L+     KP  RG K S
Sbjct: 517 NLEP---AKP--RGAKRS 529


>gi|197106923|ref|YP_002132300.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
 gi|196480343|gb|ACG79871.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
           HLK1]
          Length = 587

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 262/591 (44%), Positives = 348/591 (58%), Gaps = 28/591 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F +    +G AL+ RGY   T VQ A+L  +   +D+LVSAQTGSGKTVAFGLA A  LL
Sbjct: 3   FPDTHPALGRALAARGYAEPTPVQAAVLEAE-PGRDLLVSAQTGSGKTVAFGLAAAPALL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +RF   +APL L IAPTRELA+QV RELEWLYA+T   V  C+GG+   RE+R L  
Sbjct: 62  DGGERFEAPAAPLGLVIAPTRELALQVARELEWLYAETAARVVTCVGGMDARREQRALAA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGRL DH+    L++S L+ VVLDEADEMLDLGFR+D+E ILD++PK+RR  
Sbjct: 122 GCHLVVGTPGRLRDHLERGNLDLSALRVVVLDEADEMLDLGFREDLEEILDATPKERRTF 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I  LA+ YQ+DAVR++    +  H DI+YRAV VA ++ +NA+VN+LRY  
Sbjct: 182 LFSATLAKDIVALARRYQQDAVRIDTVRRDEPHGDIEYRAVRVAPNELENAVVNVLRYFE 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + +A++FC+TR +V      L E  F VVALSGE+ Q+ERS+ALQ +RDG AR C+ATDV
Sbjct: 242 SPSALIFCATREAVRHLYGALRERGFPVVALSGEMGQKERSDALQALRDGHARACVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+DLPDL LVIHAEL  N   LLHRSGRTGRAGRKG+SV ++P   +R+AE L   A
Sbjct: 302 AARGLDLPDLGLVIHAELPVNKAALLHRSGRTGRAGRKGVSVLLVPYTRRRKAEMLLNAA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V   W  APS + IRERD  R+L+DP+  ++   ++  +   +L    PE +AA  +R+
Sbjct: 362 GVDAQWSGAPSADEIRERDQVRMLEDPILTEAPSDEDLALARKVLEGRAPEAVAAALVRL 421

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +RA L  PEE+                R               +WF L VG  + A+ +W
Sbjct: 422 YRARLPEPEEMFEQVQDRPSGPRERPPRE------PNVVMGDGAWFRLPVGRSKNADPKW 475

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG------ 537
           L+P++CR   + ++ IG IR+    T  E++AD     R  V    G     +       
Sbjct: 476 LVPLICRLGHVTKKDIGQIRIFDHETKFEIAADAESRFREAVAAAGGRGEMRVEPSGPPG 535

Query: 538 ---------------GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                             P  +G    G   K           R  G  + 
Sbjct: 536 ERPPPRGGPPRRGPPSRGPSSKGPPPKGAHRKGPPPRGAPPKGRKPGPRER 586


>gi|238755161|ref|ZP_04616507.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
 gi|238706608|gb|EEP98979.1| DEAD/DEAH box helicase domain protein [Yersinia ruckeri ATCC 29473]
          Length = 656

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 170/576 (29%), Positives = 267/576 (46%), Gaps = 38/576 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL++ GY   + +Q   +   L  +DVL  AQTGSGKT AFGL L 
Sbjct: 7   TSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAAFGLPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             +           AP  L +APTRELAVQV   L       +GV V    GG     + 
Sbjct: 67  HNIDPT------LKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQL 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   LN+S+L  +VLDEADEML +GF +D+E I+   P 
Sbjct: 121 RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + +  +FSAT+  AI  + + + KD   V I S N    DI      +     ++ A+V 
Sbjct: 181 EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AI+F  T+ +     + L    +   AL+G+++Q  R   L+ +RDGR  +
Sbjct: 241 FLESEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK-- 415
            + R   +++     P+ E + ER   +          ++  +  +   LL K  PE   
Sbjct: 361 NIERTMKLTIPEVMLPNAELLGERRLAKFAAK--VSQQLESSDLDVYRGLLTKLQPEDEF 418

Query: 416 -----------IAAGF--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG---- 458
                      +A G   L +    +  P+         G DR     R  +   G    
Sbjct: 419 DIEALAAALLKMAQGERPLILPPEPVRRPQREFSPREDRGNDRGDRRERRPESRDGAERP 478

Query: 459 ---SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
               R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 479 ARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 538

Query: 516 ----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYK 547
               D +    RT  L+K + ++ LG  +P  R  +
Sbjct: 539 GMPGDMLSHFTRTRILNKPLNMQLLGDAQPHERRER 574


>gi|109896747|ref|YP_660002.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109699028|gb|ABG38948.1| ATP-dependent RNA helicase CsdA [Pseudoalteromonas atlantica T6c]
          Length = 579

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 154/575 (26%), Positives = 268/575 (46%), Gaps = 40/575 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   T +Q   +   +   D+L +AQTG+GKT AF L + + + A 
Sbjct: 13  NLPAELLQALEKVGYEKPTPIQAQCIPLIMEGHDLLGTAQTGTGKTAAFALPMLANVDAN 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           N      S    L +APTRELA+QV    +   + +  +  +   GG S   + R L+ G
Sbjct: 73  N------SNTQLLVLAPTRELAIQVAEAFQVYASFSRKLNVLPIYGGSSYDNQIRQLRRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VVGTPGR+ DHI+   L + +LK +VLDEADEML +GF DD+E+IL  +P +R+  +
Sbjct: 127 AQVVVGTPGRVIDHIKKGTLKLDNLKFLVLDEADEMLRMGFIDDVEWILSHAPAERQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K Y  D  +V I S+    S I  R   VA   +  A+  I+     
Sbjct: 187 FSATMPDPIRKITKRYLSDPKQVKIESKVATASTIKQRYCQVAGHHKLEALTRIMEVEEF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +    ++ L+   + V  L+G++ Q  R   ++ ++ G+  + +ATDV 
Sbjct: 247 DAVIIFVRTKTATMELSEKLSARGYAVEPLNGDIPQNSRERTVERLKRGKIDILVATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R    + R   
Sbjct: 307 ARGLDVERVSHVINYDVPYDTESYVHRIGRTGRAGRQGDAILFISHREKRMLFSIERATR 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD------PEKIAA 418
            S+   P PS+  + E    R       +++I     + +  ++          PE I A
Sbjct: 367 QSIDPMPIPSISQLNETRLSRF--KSSVIEAIGDSSIETLIPIVESIQAETEAAPEVIMA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA---------------------FKVGG 457
              +I +       +      ++      D +                        +   
Sbjct: 425 ALAKIAQGDEPLILKEGDRPDLNSAPPRGDRNDRGGRDDRGGRGRERGGDRGGDRPQRAR 484

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
            S    +G   + + VG    A+   ++  +   + I+ ++IGAI +  + + V++  + 
Sbjct: 485 KSSTPEEGMQRYRIEVGHTHGAKPGNIVGAIANEANISSKNIGAIEIYDNFSTVDLPKNM 544

Query: 518 V----DLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
                D L++T    + + ++    + P  RG   
Sbjct: 545 PRATQDTLQKTRVAGQRLNMREWSDQPPRRRGKPE 579


>gi|259907048|ref|YP_002647404.1| ATP-dependent RNA helicase DeaD [Erwinia pyrifoliae Ep1/96]
 gi|224962670|emb|CAX54125.1| Cold-shock DEAD-box protein A [Erwinia pyrifoliae Ep1/96]
 gi|283476844|emb|CAY72682.1| Cold-shock DEAD box protein A [Erwinia pyrifoliae DSM 12163]
          Length = 638

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 157/574 (27%), Positives = 260/574 (45%), Gaps = 42/574 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + E+L+  GYV  + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFAELGLNADLLESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +           AP  L +APTRELAVQV   +         +  V   GG     + 
Sbjct: 66  HNIDPT------VKAPQILVLAPTRELAVQVAEAVTDFSKHMRGLNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGRL DH++   L++S+L+ +VLDEADEML +GF +D+E I+   P 
Sbjct: 120 RALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + K + KD   V I S      DI           + +A+   
Sbjct: 180 GHQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGR-KTDALTRF 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 239 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 299 IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK--- 415
           + R   +++     P+ E + +R   +          ++  + +    LL+K  PE    
Sbjct: 359 IERTMKLTIPEVELPNAELLGQRRLAKFAAK--VQQQLESSDLEQYRALLSKMQPEDELD 416

Query: 416 ---IAAGFLRIHRAGLC--------------------APEEITPVSLVSGRDRFRDDSRA 452
              +AA  L++ +                          ++        G    R ++R 
Sbjct: 417 IETLAAALLKMAQGERPLIVPADAPQRPRREFRDRDDRRDDRRGDRPDRGPREARGEARD 476

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  R +      + + VG     E R ++  +     I+ + IG I++    + +E
Sbjct: 477 GDRPRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIE 536

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +      D +    RT  L+K + ++ +G  +P 
Sbjct: 537 LPKGMPGDVLQHFTRTRILNKPMNMQLIGDAQPR 570


>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase domain protein [Thermincola sp. JR]
 gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
          Length = 529

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 258/527 (48%), Gaps = 30/527 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE++   + I +A+ E G+   T +Q   +   L   DV+  AQTG+GKT AFG+ + 
Sbjct: 5   KTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPIL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L           A  AL I PTRELA+QV  E+  L     V      GG S+ R+  
Sbjct: 65  EKLNP------RYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIG 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL DHI    L + HLK +VLDEADEMLD+GF DDIE I+  +P+ 
Sbjct: 119 ALKRGVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPET 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  LA+ Y K+   V ++ +      I+     V    +  ++  +L
Sbjct: 179 RQTLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC T+  V      L    +Q   L G+L+Q +R+  ++  ++G+    +
Sbjct: 239 ETIDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  VI+ ++  +PE  +HR GRTGRAGR G ++  I     R+   +
Sbjct: 299 ATDVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEK 415
            +     +  +  PS+  I ER   +++      ++I G      + +V  L A ++   
Sbjct: 359 EKIIGARIARKNLPSIADIFERQKVQMIDKVA--NTINGGQLDIYRDIVQELAADYNLID 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IA+  L++        +EI                   +   G      G     +++G 
Sbjct: 417 IASAALKLALDLELPAKEI----------------EVDEADFGETGARPGMVRLFMNIGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +++     ++ ++   + I  +SIGAIR+    +FVEV     + + 
Sbjct: 461 QEEMTPPEIIKLIAEEAAIPGKSIGAIRIFDRFSFVEVPQQVAEQVM 507


>gi|255261566|ref|ZP_05340908.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
 gi|255103901|gb|EET46575.1| dead-box ATP-dependent rna helicase 53 [Thalassiobium sp. R2A62]
          Length = 736

 Score =  318 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 275/564 (48%), Positives = 364/564 (64%), Gaps = 16/564 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL  +GY  LT VQ  +  P+L  +D+LVSAQTGSGKTV FGLA+A  +L E+  F 
Sbjct: 17  IAAALEAQGYSTLTPVQTEVSKPELIGRDMLVSAQTGSGKTVGFGLAIAPVILEEDGNFE 76

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A++PLAL IAPTRELA+QV RELEWLY   GV+V   +GG+   +ERR L+ G HIVV 
Sbjct: 77  RAASPLALCIAPTRELAMQVKRELEWLYRPAGVIVTSAVGGMDARQERRSLERGTHIVVA 136

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DHI    L++S +++VVLDEADEMLDLGFR+D+E+IL  +P++R+ L+FSAT+ 
Sbjct: 137 TPGRLRDHIMRGSLDMSAIRSVVLDEADEMLDLGFREDLEYILGEAPEERQTLLFSATVP 196

Query: 191 PAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             I        + DAVRV+  +E  QH+DI+YRA+ VA +D +NAI+N+LRY+ A NA+V
Sbjct: 197 RGIVGLAKAYQKDDAVRVSTVAEREQHADIEYRALRVAGNDPENAIINVLRYYEAANALV 256

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+TRA V+R T   A   FQVVALSGEL+Q ER++ALQ MRDGRARVC+ATDVAARGID
Sbjct: 257 FCNTRAVVNRLTSRFANRGFQVVALSGELTQAERTHALQAMRDGRARVCVATDVAARGID 316

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP LELV+HAEL SN E LLHRSGRTGRAGRKG+S  ++PQ   ++AERL   A V   W
Sbjct: 317 LPKLELVVHAELPSNAETLLHRSGRTGRAGRKGVSALIVPQRWSKKAERLLGWAKVKAEW 376

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
           +  PS + +  RD +R+L D ++      DE      L   + PE+IAA +LR++RA   
Sbjct: 377 DVPPSADDVLRRDEERLLADDVWKAETTKDEAVFATKLTEMYSPEQIAASYLRLYRARQS 436

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           APE++            ++ +            F  S WF + +G K KAEARW++PMLC
Sbjct: 437 APEDLADPGSAPASRERKERA-----------PFGPSKWFRVGIGRKDKAEARWILPMLC 485

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGGEKPDFRG 545
           R+  I++  IGAIRVQ   TFVE+           L   ++L+KG+++  L       + 
Sbjct: 486 RAGDISKDDIGAIRVQDAETFVELKETSAPGFKSALGDAMELEKGVEVTELATAPDASKL 545

Query: 546 YKSSGFKSKNSQDGATKRFKRFKG 569
            +   F+ K   D    +  R  G
Sbjct: 546 ARPPRFEGKPRDDRKGGKPHRKSG 569


>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
 gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
          Length = 540

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 162/539 (30%), Positives = 272/539 (50%), Gaps = 27/539 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + +A+ + G+   + +Q   +   ++ KD++  AQTG+GKT  FG+ +A TL   
Sbjct: 24  ELSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKDLIGQAQTGTGKTATFGIPMAETLNPR 83

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + R        AL + PTRELA+QV +E+  +  +  +      GG S+ R+ R L+ G 
Sbjct: 84  DGRV------QALVLCPTRELAIQVAQEISKIGRQNDLKALPVYGGQSIDRQIRALRYGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+  K L +++++ VVLDEADEMLD+GF +DIE IL  +P++R+ L+F
Sbjct: 138 QVVIGTPGRILDHLSRKTLRLNNVRMVVLDEADEMLDMGFVEDIEAILKETPEERQTLLF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y K+   V I+ +      I+        S + +A+  IL      
Sbjct: 198 SATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQVYYECKESQKVDALCRILDMEEIG 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           ++I+FC T+  V      L    +    L G+L+Q +R   ++  RDG+A + IATDVAA
Sbjct: 258 SSIIFCRTKRGVDELVAALETRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG+++ +I     R+ + + R    
Sbjct: 318 RGLDVENVTHVINYDIPQDPESYVHRIGRTGRAGRKGIAITLINYREYRQLKLIERVTKA 377

Query: 366 SVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     PS+  I ER  +  ++    L      G+ K ++  L  ++DP +IAA  L++
Sbjct: 378 RIQRRDLPSMADIVERQKEAHKMKIVKLLDGGHFGEYKSIISELAEEYDPMEIAAATLKL 437

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
              G  A  E                        G+     G     +++G  Q    + 
Sbjct: 438 LIEGPEAETEKDEAPEF-----------------GNTGAEPGMVRLFMNIGRAQGIRPQD 480

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
           ++  +   +GI    IG I +    TFVEV  D    +   +  +  KG ++     + 
Sbjct: 481 IVRAIAEEAGIPGNVIGVINIYDKFTFVEVPEDVAGRVMGVMHQNMIKGRKISVEPAKA 539


>gi|325964224|ref|YP_004242130.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470311|gb|ADX73996.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 710

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 153/547 (27%), Positives = 263/547 (48%), Gaps = 15/547 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   
Sbjct: 78  VLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNG 137

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
           P+    AL +APTRELA+QV                +   GG +   +   L+ GA +VV
Sbjct: 138 PSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVV 197

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P  R++ +FSAT+
Sbjct: 198 GTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPSDRQVALFSATM 257

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I 
Sbjct: 258 PSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKLDAMTRILEVEEFDGVIA 317

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D
Sbjct: 318 FVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLD 377

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + +     V  
Sbjct: 378 VERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQ 437

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFLRI 423
              P+ E +      +  +     +++  ++      L+A ++ E      +IAA    +
Sbjct: 438 MHLPTAETVNTLRLGKFAER--ITETLASEDVAPFRDLIASYEEEHNVPASEIAAALAVM 495

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G     +  P +    +     D   F   G +R   +G++ + ++VG +Q+     
Sbjct: 496 AQGGQPLLVKELPAAPEFQKRERSKD--GFGSRGPTRALTEGNATYRIAVGRRQRVMPGS 553

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGGE 539
           ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+   G 
Sbjct: 554 IVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELDNGR 613

Query: 540 KPDFRGY 546
           KP     
Sbjct: 614 KPSGERG 620


>gi|110678334|ref|YP_681341.1| DEAD-box ATP dependent DNA helicase [Roseobacter denitrificans OCh
           114]
 gi|109454450|gb|ABG30655.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Roseobacter
           denitrificans OCh 114]
          Length = 705

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 279/562 (49%), Positives = 362/562 (64%), Gaps = 20/562 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+E+GY  LT VQEA+  P+L + D+LVSAQTGSGKTV FGLA+A TLL E + 
Sbjct: 11  KTLSDALAEQGYDTLTPVQEAVTAPELAKADLLVSAQTGSGKTVGFGLAIAPTLLGEQEH 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA  PLAL IAPTRELA QV REL WLYAK G VV  C+GG+    ERR L  GAH+V
Sbjct: 71  FGPAGTPLALIIAPTRELAQQVARELSWLYAKAGAVVISCVGGMDTRTERRALDRGAHVV 130

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   + +S L+AVVLDEADEMLDLGFR+++EFILD +P  RR L+FSAT
Sbjct: 131 VATPGRLCDHIKRGNIELSGLRAVVLDEADEMLDLGFREELEFILDEAPTDRRTLLFSAT 190

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA++YQ+DA R+   SE RQH+DI+YRA+     D +NAI+N+LR++ AKNAI
Sbjct: 191 VPKAIAKLAESYQRDAQRIETVSETRQHADIEYRALNTHPRDVENAIINVLRFYEAKNAI 250

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ERSNALQ +RDGRARVC+ATDVAARGI
Sbjct: 251 VFCNTRAAVARLTTRFTNRGFSVVALSGELTQSERSNALQALRDGRARVCVATDVAARGI 310

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A +   
Sbjct: 311 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPPKLRTKANRLLGWAKLKAE 370

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS   +  +D  R+L DPL+  ++  + +++V  L       ++A   +  ++A  
Sbjct: 371 WGTPPSAAEVNAQDTARLLSDPLWNATVSEEAEELVAQLAQDFSATQLAQAVVSFYQAQR 430

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+T  +    R R                 F  S WFS+SVG    AE R L+PM+
Sbjct: 431 SAPEELTDPTTPDDRPR---------------KTFGPSVWFSVSVGRDAGAEPRTLLPMI 475

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFR 544
           C    + +  IGAIR++ D +FVEV A   D L       + L+ G+ L  L  + PD  
Sbjct: 476 CNKGDMTKDDIGAIRIRQDQSFVEVLASRADGLVAALGSDMTLEAGVVLTRL-AQAPDLG 534

Query: 545 GYKSSGFKSKNSQDGATKRFKR 566
             +    K         +   R
Sbjct: 535 QDRPGTSKPGAKPHRKKRPEDR 556


>gi|227501650|ref|ZP_03931699.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|306835824|ref|ZP_07468821.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|227077675|gb|EEI15638.1| DEAD-box helicase [Corynebacterium accolens ATCC 49725]
 gi|304568298|gb|EFM43866.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 623

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/551 (29%), Positives = 279/551 (50%), Gaps = 28/551 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P  I +A+++ G+   + +Q   +   +  +DV+  AQTG+GKT AF L + S 
Sbjct: 57  FEHLGLPDKILQAVAKVGFTTPSPIQAETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQ 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L  +      A  P AL +APTRELA+QV    +        +  +   GG +   +   
Sbjct: 117 LDPQ------ARHPQALVLAPTRELALQVADAFQSFAETLKGIEVLPIYGGQAYGIQLSG 170

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+S+P ++
Sbjct: 171 LRRGAQVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILESTPDRK 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL 
Sbjct: 231 QVALFSATMPNAIRRLSKQYLHNPAEVTVKSERRTNDNIKQRFLLIPHRAKMDAFTRILE 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC T+       + L +  +   A++G+++Q +R   +  ++DGR  + +A
Sbjct: 291 VITYDAIIVFCRTKHETEEVAEALRDRGYSAAAINGDIAQAQRERTVDQLKDGRLDILVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + 
Sbjct: 351 TDVAARGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 410

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------E 414
           R  N  +     PSV+ + E+  ++  Q      S+   +      L+ K+        +
Sbjct: 411 RVTNARLEEMDLPSVDEVNEKRKEKFAQ--AITQSMDNKQADFFRNLVRKYSEDNNVAMD 468

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR-------AFKVGGGSRDNFKGSS 467
            IAA    +H+ G     E  P+       R RDD +         K  GGS+       
Sbjct: 469 DIAAALAVMHQGGKNFLLEDKPLPKPKKDRRDRDDRKRDRDFKGGGKNRGGSKRPDGDFE 528

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRR 523
            + L VG +Q      ++  +    G++ +  G I +    T V++  +     +D L+ 
Sbjct: 529 TYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKNMDPAVLDRLKD 588

Query: 524 TVKLDKGIQLK 534
           T    + I+++
Sbjct: 589 TRISGQLIKIQ 599


>gi|134046209|ref|YP_001097694.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C5]
 gi|132663834|gb|ABO35480.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C5]
          Length = 541

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 163/535 (30%), Positives = 275/535 (51%), Gaps = 13/535 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ F+N+     I EAL ++G+   T +QE  +   +   +D++  AQTG+GKT AFG+ 
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTTPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+         +    AL +APTRELA+QV  E++ +     + V    GG S+ R+
Sbjct: 61  ILETID------ESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S  
Sbjct: 115 IRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   +  
Sbjct: 175 TEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        ++FC T+A V   +  L E  +    L G+++Q +R   L   +  +  V
Sbjct: 235 IIDLEKEFYGLIFCKTKADVDEVSSRLNEKGYAAEGLHGDMTQAQREKTLDKFKGRKINV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ +
Sbjct: 295 LVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + + A   +  E  P V+ I     ++I   +++ L        E    D+ L   DP+
Sbjct: 355 YIQKIAKTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCENMAADL-LEDADPQ 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++ +  L+       +      +   S R   RD S   +  G       G+    +++G
Sbjct: 414 EVLSAVLKYALKDELSESNYKKIGRNSQRSEGRDRSGRSEGRGRRSFVAGGNVRLFVALG 473

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              K   + L+  + R S +  + I  ++V    +FV VS+D  + +  + K +K
Sbjct: 474 KLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSDDAERILDSFKHEK 528


>gi|210623578|ref|ZP_03293904.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
 gi|210153448|gb|EEA84454.1| hypothetical protein CLOHIR_01854 [Clostridium hiranonis DSM 13275]
          Length = 538

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 163/555 (29%), Positives = 271/555 (48%), Gaps = 30/555 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE++   Q I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +
Sbjct: 3   IKRFEDLDINQNIKKAIAEMGFEEPSPIQAKSIPVILEGKDVIGQAQTGTGKTAAFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +   +       +  A+ + PTRELA+QV +E+  L     G+      GG  + R+
Sbjct: 63  LEKIDPND------RSLQAIVLCPTRELAIQVSQEIRKLAKYMQGIKTLPIYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  +++GTPGR  DHI+ K +   ++K VVLDEADEMLD+GFR+DIE IL++ P
Sbjct: 117 IKALKGGVQVIIGTPGRTIDHIKRKTIKPGNVKMVVLDEADEMLDMGFREDIETILENVP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+   FSAT+  AI  L K YQ +   + +  +     +I    +    S++   +  
Sbjct: 177 EERQTTFFSATMPKAILELTKKYQNEPEHIKVVRKELTVENIKQYYIETRASNKIEVLSR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K ++VFC+T+         L    +   AL G+L Q +R   +   R+G   +
Sbjct: 237 LIDVYNPKLSVVFCNTKKGADELVGELQGRGYFADALHGDLKQVQRDIVMDKFRNGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+G+S   +     R+ +
Sbjct: 297 LVATDVAARGIDVDDVECVFNFDLPQDEEYYVHRIGRTGRAGREGLSFSFVYGRDMRKMK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERD-------AQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            + R     +   P P+V  + E+         +R+  +      IQ  E    +     
Sbjct: 357 DIERYTKSKLEKHPIPTVGDVEEKKVGAFFEEVKRVANEGKLSKQIQWLE-NFCENEDVD 415

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +    IAA  L++        E I      + R               S    +G     
Sbjct: 416 YSMVDIAAALLKLAMGEEEKEEIIEEKPKKNRRKEE------------SSGAKEGMVRLF 463

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           ++VG KQ+ +A+ ++  +   +GI  ++IG I +    TFVEV       +   +K +K 
Sbjct: 464 INVGKKQRVQAKDILGAIAGEAGIPGKTIGTIDIYDKFTFVEVPKKKAKTVIEKMK-NKK 522

Query: 531 IQLKYLGGEKPDFRG 545
           I+   L  EK + + 
Sbjct: 523 IKGNKLNIEKANKKK 537


>gi|315505697|ref|YP_004084584.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315412316|gb|ADU10433.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 585

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 170/570 (29%), Positives = 273/570 (47%), Gaps = 21/570 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    
Sbjct: 27  LRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGR 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P S    L + PTRELAVQV           G  V    GG  + R+ R L +G  
Sbjct: 87  AEGDPVS----LVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVD 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P  R+ ++FS
Sbjct: 143 VVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  LA+ +  D VR+ I  E     +   +   A +VA + +  A+  +L    
Sbjct: 203 ATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVES 262

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDV
Sbjct: 263 PTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDV 322

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 323 AARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 382

Query: 364 NVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +  +  P+V  +R R  +     L++ L  D +    + +V+ L  + D  ++A   
Sbjct: 383 GQRIAIDKIPTVADMRTRRLELTQGALRESLLEDDLDP-YRAIVESLTDEFDLVEVALAA 441

Query: 421 LRIHRA----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +++       G    EEI  V +   R+   +     +  G +R    G++   + +G +
Sbjct: 442 VKLAHEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRR 501

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                + L+  +   + I+ + IG+I +    + VEV     D +        G++   +
Sbjct: 502 AGVRPQDLVGAITGETRISGRDIGSIEIADRFSLVEVPQGVADEIIA------GLRGTTI 555

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
            G K   R  +      +    G  +R +R
Sbjct: 556 KGRKATVRRDRDGDGPGERRDRGYERRDRR 585


>gi|85373430|ref|YP_457492.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594]
 gi|84786513|gb|ABC62695.1| cold-shock dead-box protein A [Erythrobacter litoralis HTCC2594]
          Length = 578

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 261/565 (46%), Positives = 353/565 (62%), Gaps = 12/565 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FEN+P V+GE+L+ERGY   T VQ A+  PD + +D++VSAQTGSGKTVAFGLALA  L
Sbjct: 2   SFENLPPVLGESLAERGYSAPTPVQAAVTAPDAKGRDLIVSAQTGSGKTVAFGLALADEL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           LAE      A  PLAL +APTRELA+QV REL WLYAK G+ +A C+GG+   +ERR L+
Sbjct: 62  LAEIGGTPLAEKPLALVVAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRALR 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFRDD+E ILD++P  RR 
Sbjct: 122 SGPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFRDDLEEILDAAPDGRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA+ YQ DA+R+++A ENR H DI Y+A+ VA S+ +NA+VN+LR+H
Sbjct: 182 LLFSATLPQQIVRLAQRYQTDALRLSLAGENRGHGDIAYQAISVAPSEIENAVVNLLRFH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AI FC+TR SV R    L    F VVALSGE SQ ER+ ALQ +RD RARVC+ATD
Sbjct: 242 EAETAICFCATRDSVRRLHATLQNRGFGVVALSGEHSQSERNQALQALRDRRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+DLP L LVIH E+  + E L HRSGRTGRAG+KG +  ++P N ++R E + R 
Sbjct: 302 VAARGLDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRKRVESMLRG 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A ++  W  APS + IR++D  R+++          D++ +   ++ +  PE IAA  ++
Sbjct: 362 AKIAAQWMDAPSAKDIRQQDQARLMEKLTTPTEYDEDDRALASKVMDRMAPEDIAAALVQ 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            HRA L  PEE+   +          ++RA       R  F+ + WF + +G +Q AE R
Sbjct: 422 AHRAKLPQPEELLANTP---------EARAKSKAEKHRPGFEDTVWFRMGIGRRQNAEPR 472

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV---KLDKGIQLKYLGGE 539
           WL+P++CR   I R  IGAIR+    ++ ++           V         Q   +  E
Sbjct: 473 WLLPLICRRGHITRNEIGAIRIGQHESWFQIPRAVAPRFADAVSRTASGDDEQDAIVIEE 532

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRF 564
             +    ++   +         K F
Sbjct: 533 SAEGPRMEARQNRKHGGPAARAKPF 557


>gi|311112058|ref|YP_003983280.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
 gi|310943552|gb|ADP39846.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa ATCC 17931]
          Length = 695

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 169/588 (28%), Positives = 276/588 (46%), Gaps = 25/588 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY   + +QE  +   L  KDV+  AQTG+GKT AF L   S +    
Sbjct: 111 LDPRVLSALEEVGYEKPSPIQEQTIPLLLDGKDVVGLAQTGTGKTAAFALPALSRMAELA 170

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    +     L +APTRELA+QV                +   GG     +   L+ GA
Sbjct: 171 DINGVSRDTQVLVLAPTRELALQVAEAFSSYATHMEDFTVLPIYGGSPYGPQLAGLRRGA 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S+L+ +VLDEADEML +GF +D+E IL+ +P  +++ +F
Sbjct: 231 QVVVGTPGRVIDHLEKGSLDLSNLQYLVLDEADEMLRMGFAEDVETILEGTPDAKQVALF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ Y  D   V + ++    ++I  R + V  S + +A+  +L      
Sbjct: 291 SATMPNSIRKIAQQYLNDPTEVRVKTKTTTGANIRQRYMQVMHSHKLDAMTRVLEVENYD 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+         L    FQ  A++G++ QQ R   +  +RDGR  + +ATDVAA
Sbjct: 351 GIIVFVRTKKETEEVADKLKARGFQAAAINGDIPQQLRERTVDALRDGRIDILVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++ +    
Sbjct: 411 RGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRDGEAILFVTPREKYMLRQIEKATRQ 470

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--PEKIAAG 419
            V     P+ + +     QR  +     ++I+ ++    +K+++    +HD   E IAA 
Sbjct: 471 KVEPMHMPTAQDVNSSRKQRFAEQ--ITETIETEDLNFFRKIIEDYENEHDTTAEDIAAA 528

Query: 420 FLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
              I + G    L   ++I   S     D      R  K G    D  +G   + L+VG 
Sbjct: 529 LAVIAQQGRAFFLDENDDIARKSRAFADDTKDCGKRGPKKGRNHSD--EGMVNYKLNVGR 586

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGI 531
             + +A  ++  L    GI    IG+I ++   T V +  D      D LR T    + I
Sbjct: 587 ASRVKASAIVGALANEGGIKGSQIGSIDIRQHFTIVGLPEDLPKGFFDRLRDTKVAGEFI 646

Query: 532 QLK------YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            ++        GG        +  GF+S+       +  +R K   K 
Sbjct: 647 NIRKDRGPQGGGGRGFRRNDRRDGGFRSRRDDHRGGRDDRRGKSHGKR 694


>gi|302867898|ref|YP_003836535.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302570757|gb|ADL46959.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 585

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 170/570 (29%), Positives = 273/570 (47%), Gaps = 21/570 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    
Sbjct: 27  LRTELLGALSALGYEEPTPIQREAIPPLLAGQDLLGQAATGTGKTAAFALPLLQRMPVGR 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P S    L + PTRELAVQV           G  V    GG  + R+ R L +G  
Sbjct: 87  ADGDPVS----LVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDHGVD 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P  R+ ++FS
Sbjct: 143 VVVATPGRALDHIARGTLRLGALSTVVLDEADEMLDMGFAEDIEAILEHAPAGRQTVLFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  LA+ +  D VR+ I  E     +   +   A +VA + +  A+  +L    
Sbjct: 203 ATMPARIDGLARQHLTDPVRIRIERERPVAGEAPRVRQSAYIVARAHKPAALGRVLDVES 262

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDV
Sbjct: 263 PTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDV 322

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 323 AARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 382

Query: 364 NVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +  +  P+V  +R R  +     L++ L  D +    + +V+ L  + D  ++A   
Sbjct: 383 GQRIAIDKIPTVADMRTRRLELTQGALRESLLEDDLDP-YRAIVESLTDEFDLVEVALAA 441

Query: 421 LRIHRA----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +++       G    EEI  V +   R+   +     +  G +R    G++   + +G +
Sbjct: 442 VKLAHEATSPGSDDEEEIPQVPVRGPREGRPEAGGRGERRGPARPRTGGTTQVFIGLGRR 501

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                + L+  +   + I+ + IG+I +    + VEV     D +        G++   +
Sbjct: 502 AGVRPQDLVGAITGETRISGRDIGSIEIADRFSLVEVPQGVADEIIA------GLRGTTI 555

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
            G K   R  +      +    G  +R +R
Sbjct: 556 KGRKATVRRDRDGDGPGERRDRGYERRDRR 585


>gi|295394794|ref|ZP_06805009.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972390|gb|EFG48250.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 586

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 163/581 (28%), Positives = 276/581 (47%), Gaps = 36/581 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +  A+++ GY + + +Q   +   L+ +DV+  AQTG+GKT AF L L S++   
Sbjct: 20  DLDERVARAVADLGYESPSPIQAKTIPFLLQGRDVIGLAQTGTGKTAAFALPLLSSIAGR 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  ++PLAL +APTRELA+QV   L       G    +   GG S   +   L+ G
Sbjct: 80  E----RPTSPLALILAPTRELAIQVAEALTSYATHLGDFSVLPIYGGQSYTPQISGLKRG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH+VVGTPGR+ DHI+   L++SH++ +VLDEADEML +GF++DIE I   +   R++ +
Sbjct: 136 AHVVVGTPGRVIDHIKRGTLDLSHVEHLVLDEADEMLKMGFQEDIEEIFAKTNPDRQVAL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +   Y  D   V I ++    ++I  R + V  S + +A+  IL     
Sbjct: 196 FSATMPASIHRITGQYLNDPAEVRIQAKTTTSANIRQRYLTVMHSHKLDALTRILEVEKY 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+         L    F   A++G++ Q  R   ++ +R G   + +ATDVA
Sbjct: 256 DGIIMFVRTKQETEELADKLKARGFSAAAINGDIPQVVRERTVEALRSGSIDILVATDVA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +     R  + + +   
Sbjct: 316 ARGLDVERISLVVNFDIPHDTESYVHRIGRTGRAGRTGEAILFVTPRENRLLKAIEKATR 375

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHD--PEKIAAGF 420
             V     P+VE +     Q+         + Q   + + +++  +  H+   E +AA  
Sbjct: 376 QKVEPLVMPTVEELTVTRTQKFQDRISHTLNSQDLSELRPVIEEYVNTHNVPAEDVAAAL 435

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
             +   G     E  P          R                 G + + L+VG   K  
Sbjct: 436 ASLVLDGATLTAEPLPEPQARASRNER------------ARTADGMTTYRLAVGRMDKVN 483

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYL 536
              ++  +    GI+ Q IG I ++ + + V++  D     +  L +T    + I ++  
Sbjct: 484 PGAIVGAIANEGGISSQQIGNISIRSNHSLVDLPQDLDASVLKRLSKTKVAGRHIDIR-- 541

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFK----RFKGASKN 573
               PD RG     FK +++  GA +  K     F+G   N
Sbjct: 542 ----PD-RGRPGRPFKKRSNDKGAGEGRKFGKDGFRGRKGN 577


>gi|111023001|ref|YP_705973.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822531|gb|ABG97815.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 586

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 163/588 (27%), Positives = 279/588 (47%), Gaps = 33/588 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +ALS+ GY + + +Q A + P L   DV+  AQTG+GKT AF + + S
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +           +P AL +APTRELA+QV     ++     G+ V    GG S   +  
Sbjct: 72  KIDLTQ------KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLS 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++S L  +VLDEADEML +GF++D+E IL  +P+ 
Sbjct: 126 GLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEY 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  ++K Y  D V + + S+    S+I  R V VA   + +A+  +L
Sbjct: 186 KQVALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+ +     + L    F   A++G++ Q +R   +  ++ G   + +
Sbjct: 246 EVEDFEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            +     +     PSV+ +  +   +        +S+  D   +   ++  ++ E     
Sbjct: 366 EKATRQPLAEMQLPSVDDVNAQRVSKFGDS--ITESLTSDNLALFRKMIEDYEQEHDVPL 423

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWF 469
             IAA      R G        P          R+        G    +        + +
Sbjct: 424 ADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQELATY 483

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTV 525
            ++VG + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT 
Sbjct: 484 RIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTR 543

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                IQL+   G          SG       D A  +F+R + + K 
Sbjct: 544 ISGVLIQLQPDSGP--------PSGRPRGGRDDRAGGKFQRDRDSRKK 583


>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090073|sp|Q8K9H6|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 601

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 167/555 (30%), Positives = 267/555 (48%), Gaps = 26/555 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  +   I ++LS+ GYV  + +Q A +   L  +DVL  AQTGSGKT AF L L   L
Sbjct: 9   SFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNL 68

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDL 121
                      AP  L +APTRELAVQV             +  +   GG     + R L
Sbjct: 69  NIN------LKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVVGTPGRL DH++   LN+S+L A+VLDEADEML +GF +D+E I+   PK+ +
Sbjct: 123 RQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+  AI  ++K + K+   + I S      DI     +V    + +A++  L  
Sbjct: 183 TALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGR-KTDALIRFLEV 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +    ++ L  + +   AL+G+++Q  R   L+ ++ GR  + IAT
Sbjct: 242 EDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLDILIAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R
Sbjct: 302 DVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIER 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEK 415
             N ++     P +E + +R  +R  +     + ++  +      LL K       D + 
Sbjct: 362 TINQTIPEVQLPKIEVLCKRRLERFAKK--VQEQLESRDLDEYSALLDKLYSPDDLDIKT 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------KGSSWF 469
           +A+  L++ + G     +   +   S    F+DD R       +  N       K    +
Sbjct: 420 LASALLKMAQGGRPLIIKKDLLQRPSREFSFKDDRRREDNHRNNNRNRRERRELKDIDLY 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTV 525
            +  G     E R ++  +     IN ++IG I++      VE+      D +  L +T 
Sbjct: 480 RIEAGRNDGVEVRHIVGAIANEGNINSRNIGNIKLFSSYAIVELPKGLSKDLLQRLIKTK 539

Query: 526 KLDKGIQLKYLGGEK 540
            L+K I +K L   K
Sbjct: 540 ILNKKINIKLLRDIK 554


>gi|15602977|ref|NP_246049.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721456|gb|AAK03196.1| DeaD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 610

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 157/553 (28%), Positives = 264/553 (47%), Gaps = 23/553 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +  A+S+ G+   + +Q++ +   L   DVL  AQTGSGKT AF L L +
Sbjct: 7   TFNDLGLPEFLLNAVSDLGFETPSPIQQSCIPNLLNGHDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  +         P  L +APTRELA+QV    E           V   GG     + R
Sbjct: 67  QIDLDK------KYPQMLVMAPTRELAIQVADACEHFCKYAKNTNIVTLYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DHIR   L++S+L+ +VLDEADEML +GF DD+E ++   P++
Sbjct: 121 ALRQGAQVVVGTPGRILDHIRRGTLDLSNLRFMVLDEADEMLRMGFIDDVETVMAELPEQ 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + K + KD   + I S    + DI      V    +++A++  L
Sbjct: 181 HQTALFSATMPDPIRRITKRFMKDPKEIKIKSTQTTNPDITQSCWYVHGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++L +H F+  AL+G+++QQ R   L  +R+G   + +
Sbjct: 241 EVEKFDAAIIFTRTKTGTLDVTELLEKHGFRAAALNGDMTQQLREQTLDRLRNGSLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRTGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            +     +     P+   ++A R    +  +   L    +      + D+  A  D E I
Sbjct: 361 EQLTKKPITEVEVPNHEVLQACRREKFKAKITVQLEHHDLGLYRSLLEDMFTADQDQEDI 420

Query: 417 AAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           AA  L + +          P+            R                    +    +
Sbjct: 421 AAAMLMLLQGKQKLILPADPIIDRKTSRGDRGERRERGGRENPRSAERRGYGTPQAMDLY 480

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG    AE R ++  +     IN + IG I++  D T +E+      + + +  +T 
Sbjct: 481 RIEVGRLDGAEVRHIVGAIANEGDINSRYIGHIKLYDDYTTIELPQGMPKELLGVFAKTR 540

Query: 526 KLDKGIQLKYLGG 538
            ++K +Q+ ++G 
Sbjct: 541 VMNKQMQMSFVGA 553


>gi|309792203|ref|ZP_07686675.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225744|gb|EFO79500.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 523

 Score =  316 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 161/547 (29%), Positives = 266/547 (48%), Gaps = 28/547 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I   L + GY   T +QE  +   L   DV+  AQTG+GKT AF L +
Sbjct: 1   MPTFSELGLSEPILRVLGDLGYDEPTPIQEQAIPVMLSNSDVIAQAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E         P AL +APTRELA+QV   +        + VA   GG  ++R+ 
Sbjct: 61  VQRLRDE-------RVPQALILAPTRELAMQVAEAIYKYGKGRRISVAPVYGGQPIYRQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGTPGR+ DH+R   L +  +  VVLDEADEMLD+GF +DIEFIL  +P+
Sbjct: 114 RALEQGVQVVVGTPGRIMDHMRRGTLVLDQISTVVLDEADEMLDMGFAEDIEFILQQTPQ 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSAT+  A+  L + Y +DA R++IA+E             V   ++ +A+  I
Sbjct: 174 QRQTALFSATMPEAVQGLVQRYTRDAKRISIAAEQLATPRTRQTYYEVMPREKLDALCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+FC TR+      + L    +    L G++SQ +R   ++  R+G+A + 
Sbjct: 234 LDVETPSSAIIFCRTRSEADALGESLQGRGYLSEVLHGDMSQAQRDRVMKRFREGQAELL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD+  VI+ ++ ++PE  +HR GRTGRAGR G+++ +I    +R  + 
Sbjct: 294 VATDVAARGLDIPDVTHVINYDVPNDPEAYVHRIGRTGRAGRTGLAITLITPRERRMLQI 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R +   +  +  PS+  +  R  +         + ++  +     +++ +   E  A 
Sbjct: 354 IERASRSRIQRQKLPSLADVAARRREAFRD--ALREVLEQGDLDPYILMVEEMSEEHDAV 411

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                         ++   +     +          V G +     G     L VG   +
Sbjct: 412 --------------DLAAAAFKLLLNEVEQGETITSVEGDAAGVEPGMQRLFLDVGRFDR 457

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKYL 536
                ++  +    G++ +SIG+I +    +FVEV  +    +   +     +G Q++ +
Sbjct: 458 IRPSDIVGAIANEVGLSGKSIGSIDIYDRFSFVEVPNEQAQKVLHILNGVSMRGKQVR-V 516

Query: 537 GGEKPDF 543
              KP  
Sbjct: 517 SIAKPKR 523


>gi|149203654|ref|ZP_01880623.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
 gi|149142771|gb|EDM30813.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. TM1035]
          Length = 759

 Score =  316 bits (808), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 284/575 (49%), Positives = 381/575 (66%), Gaps = 25/575 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  AL+ RGY  LT VQEA+ +P L   D+LVSAQTGSGKTV FGLA+A TLL   DR
Sbjct: 4   PALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLGGEDR 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA+APLAL +APTRELA+QV REL WLYA+ G  +  C+GG+    ERR L+ GAHIV
Sbjct: 64  LPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVTCVGGMDARDERRALERGAHIV 123

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRLCDHI    L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P+ RR LMFSAT
Sbjct: 124 VGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPEDRRTLMFSAT 183

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LA+ +Q+DA RV   +  +QH+DI Y+A+ V+  D + A++N+LRYH A+NAI
Sbjct: 184 VPPMIAKLAEKFQRDAQRVTTLTGAKQHADIAYQALTVSPQDAEGAVINLLRYHDAQNAI 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V+R T  L+   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 244 VFANTRAMVARLTARLSNRGFAVVSLSGELSQSERTHALQAMRDGRARVCVATDVAARGI 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  ++P     +AERL + A ++  
Sbjct: 304 DLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVPLKSANKAERLLKFAKITAE 363

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   P+ E I  +D +R+L DP++ ++    E      LLA H PE IAA +LR++++  
Sbjct: 364 WTTPPTPEDIEAKDRERLLSDPVWSETPSETEGAFAAELLALHSPEVIAAAYLRLYKSRW 423

Query: 429 CAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            APEE++ P +    R+R                 F  S WF+LSVG+  +AEARWL+P+
Sbjct: 424 SAPEELSAPGAPAPARER---------------SAFGPSRWFALSVGNDDRAEARWLLPL 468

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGG----- 538
           LCR+  +++ +IGAIRVQ   TFVE++   V     ++    +LD+GI  + L       
Sbjct: 469 LCRAGNLDKSAIGAIRVQAAETFVELAEAAVPGFLSSLGEGGQLDEGITARALDSAPAFA 528

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             P            +  ++    R  R  G S++
Sbjct: 529 PAPRAPREDRPERAPRAPREDRPARAPREYGGSRD 563


>gi|237785892|ref|YP_002906597.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758804|gb|ACR18054.1| ATP-dependent RNA helicase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 823

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 272/581 (46%), Gaps = 39/581 (6%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
            A+ + G+   + +Q A +    + +DV+  AQTG+GKT AF L + S L     +    
Sbjct: 167 RAVKKVGFETPSPIQAATIPILAQGRDVVGLAQTGTGKTAAFALPILSRLDRSQKK---- 222

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGT 131
             P AL ++PTRELA+QV    +      G V  +   GG S   +   L+ GAHIVVGT
Sbjct: 223 --PQALVLSPTRELALQVADAFQEFADHLGGVHVLPIYGGQSYGIQLSGLRRGAHIVVGT 280

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ DH+    L++S LK +VLDEADEML++GF++D+E IL  +P+ ++  +FSAT+  
Sbjct: 281 PGRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQEDVERILADTPEHKQTALFSATMPA 340

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           +I  L+K Y +D   V I S+ R   +I  + +LV    + +A+  IL        I+F 
Sbjct: 341 SIRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLVNHHYKLDALTRILEVTEFDAMIMFA 400

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+ +     + L    F   A++G+++Q +R   +  +RDGR  + +ATDVAARG+D+ 
Sbjct: 401 RTKQNTEELAEKLRARGFSAAAINGDMAQNQRERTVDQLRDGRLDILVATDVAARGLDVE 460

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R    S+    
Sbjct: 461 RISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRERRLLRSIERATKSSIEEMQ 520

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFLRIHR 425
            P+V+ + E    +  Q     +S+   +  +   L+  +  E       IAA      +
Sbjct: 521 LPTVDEVNETRKAKFAQS--ITESLADPQVDLFRGLINSYAEEHETPLADIAAALATQSQ 578

Query: 426 AGLCAPEEITPV------------SLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFSL 471
           +G     +   +                  D    + R          +  G   + + +
Sbjct: 579 SGDEFLLKEDTIRRNDRRNDRRGRRNDREPDTRSLNERFSGKEPPRFTDRTGKEMAVYKI 638

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKL 527
           +VG +Q+     ++  +    G+N +  G I +  + + VE+ AD      + L  T   
Sbjct: 639 AVGKRQQVRPGAIVGAIANEGGLNSRDFGKISIFSEHSLVELPADLPMEVFEALEDTRVS 698

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
            + I+++      PD           K  +    +R  RF 
Sbjct: 699 GQLIKIE------PDPGAPAGRPGAHKRDRQSGDRRGGRFN 733


>gi|119963381|ref|YP_948725.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950240|gb|ABM09151.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 726

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 152/543 (27%), Positives = 265/543 (48%), Gaps = 15/543 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   
Sbjct: 82  VLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNG 141

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
           P+    AL +APTRELA+QV                +   GG +   +   L+ GA +VV
Sbjct: 142 PSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVV 201

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI    L++S L+ +VLDEADEML +GF DD+E I   +P+ R++ +FSAT+
Sbjct: 202 GTPGRVIDHIAKGSLDLSELQYLVLDEADEMLRMGFADDVEQIFQQTPETRQVALFSATM 261

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  ++K Y  +   +++ S+    ++   R + V    + +A+  IL        I 
Sbjct: 262 PGQIRRMSKQYLNNPAEISVKSKTTTGANTKQRYLQVMGPHKLDALTRILEVEEFDGVIA 321

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D
Sbjct: 322 FVRTKMATEDLADKLKARGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLD 381

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + +     V  
Sbjct: 382 VERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRSIEKATRQPVEQ 441

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFLRI 423
              P+ E +      +  +     ++++ ++      L++ ++ E      +IAA    +
Sbjct: 442 MHLPTAETVNTLRLGKFAER--ITETLESEDVAAFRDLISSYEEEHNVPASEIAAALAVM 499

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G     +  P +    +     D   F   G +R   +G++ + ++VG +Q+     
Sbjct: 500 AQGGQPLLVKELPAAPEYQKRERSKD--GFGSRGPTRALTEGNATYRIAVGRRQRVMPGS 557

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGGE 539
           ++  +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+   G 
Sbjct: 558 IVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELINLELDNGR 617

Query: 540 KPD 542
           +P 
Sbjct: 618 RPS 620


>gi|302392742|ref|YP_003828562.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
 gi|302204819|gb|ADL13497.1| DEAD/DEAH box helicase domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 527

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/544 (29%), Positives = 263/544 (48%), Gaps = 31/544 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+   I +A+ + G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ + 
Sbjct: 4   KQFEELNLSNEITKAVEDMGFEEATPIQTEAIPHLLAGKDVIGQAQTGTGKTAAFGIPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  ++       +  AL + PTRELA+QV  E+  L      +  +   GG S+ R+ 
Sbjct: 64  EKIDPDD------KSVQALVLCPTRELAIQVSEEIGRLAKYKRKIKTLPVYGGQSIKRQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IV+GTPGR  DH+R   L   +LK V+LDEADEML++GFRDDIE IL+    
Sbjct: 118 KALKKGVQIVIGTPGRTMDHMRRGTLKFDNLKMVILDEADEMLNMGFRDDIETILEGVKG 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ + FSAT+  +I  L K YQ D   V +  +     +I+     V   ++   +  +
Sbjct: 178 KRQTIFFSATMPQSILKLRKKYQTDPEIVKVVHKKLTVPNIEQGYFEVNRRNKLEVLSRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K +IVFC+TR  V   T  L    + V  + G L+Q +R   +   ++G     
Sbjct: 238 IDIYNPKLSIVFCNTRKQVDELTIQLQARGYFVDGIHGGLNQPQRDRVMNKFKNGTIETL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+E V + ++  + E  +HR GRTGR GR+G +   +      + ++
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDIPQDIEYYVHRIGRTGRVGRQGYAFTFVVGKEIYQLKK 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + + A   +  +  PSV  + E   + +L    + L  +++  + K + +++   +    
Sbjct: 358 IEKYAKTKIERKQVPSVSDVEESKMELLLDRVSEILENENLAQETKLIEELVEEDYVSID 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  L++                    DR   +        G      G     +++GS
Sbjct: 418 IAAALLKLVM------------------DREEQEGAEKVESFGDTGAEPGMVRLFINIGS 459

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           KQ      ++  +   + I    +G I +    TFVEV  +    + + +K +  I+ K 
Sbjct: 460 KQNVSPGDVVGAIAGETSIPGNVVGLIDIYDKFTFVEVPREYAKEVLKIMK-NNQIKGKS 518

Query: 536 LGGE 539
           +  E
Sbjct: 519 IDIE 522


>gi|220931392|ref|YP_002508300.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
 gi|219992702|gb|ACL69305.1| DEAD/DEAH box helicase domain protein [Halothermothrix orenii H
           168]
          Length = 527

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 153/534 (28%), Positives = 260/534 (48%), Gaps = 30/534 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ + G+   T +Q   + P L  KD++  AQTG+GKT AFG+ L   +   
Sbjct: 10  NISKEILKAVEDMGFEETTPIQTKAIPPILNGKDIIGQAQTGTGKTAAFGIPLLEKIDTR 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           N +      P A+ + PTRELA+QV  EL+ L      +  +   GG S+ R+ + L+ G
Sbjct: 70  NKK------PQAIILCPTRELAIQVAEELKRLAKYKRSLYTLPVYGGQSIKRQIKALKKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++GTPGR+ DH+R   LN+SH+  VVLDEAD MLD+GF DDI+ IL   P  R+ L 
Sbjct: 124 VQVIIGTPGRVMDHMRRGTLNLSHINFVVLDEADVMLDMGFIDDIKTILKDIPNDRQTLF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  L+K YQK +  + IA E      I+     V  SD+   +  ++  +  
Sbjct: 184 FSATIPETILDLSKRYQKKSQFIKIAHEKLTVPGIEQYYYEVRRSDKLKVLTRLIDLYSP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++FC+TR  V      L    +   AL G  +Q +R   +   R+G   + +ATDVA
Sbjct: 244 GLSLIFCNTRKMVEELNIQLQARGYLSDALHGGFNQNQRDRVMDKFRNGIIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +E V + ++  + +  +HR GRTGRAG+ G +   +      +   + +   
Sbjct: 304 ARGIDVNGVEAVFNYDVPQDTDYYVHRIGRTGRAGKTGKAFTFVVGKDIYKLRDIQKYTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             ++ +  P++  I +   + ++ D    +  + ++   K + ++L   +   +IAA   
Sbjct: 364 TRIIKQDIPTLTDIEQAKLENLINDLTDYIDREHLKKYIKIIENLLDDDYTAIEIAAALF 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           + +     +  EI    L                         G     +++G K     
Sbjct: 424 KKYMENESSEGEINNNKL------------------NDTGAEPGMVRLFINIGKKHNITP 465

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQL 533
             ++  +   + ++ + IGAI +  + TFVEV  +    + + +K +  KG ++
Sbjct: 466 GHIVGAIAGETSLSGRLIGAIDLYDNFTFVEVPEESSREVLKIMKNNYIKGKKI 519


>gi|118589362|ref|ZP_01546768.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
 gi|118438062|gb|EAV44697.1| ATP-DEPENDENT RNA HELICASE DEAD [Stappia aggregata IAM 12614]
          Length = 697

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 277/559 (49%), Positives = 377/559 (67%), Gaps = 10/559 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RGY NLTSVQE++L+    E D+LVSAQTGSGKTVAFGLALA TLL   D    A AP+A
Sbjct: 18  RGYENLTSVQESVLSDAPPEADLLVSAQTGSGKTVAFGLALAPTLLDGKDTLGQAGAPIA 77

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV  EL WLY + G V A C+GG+    ERR L+ G HIVVGTPGRL D
Sbjct: 78  LAIAPTRELALQVKEELTWLYNEAGAVTASCVGGMDPRMERRTLERGVHIVVGTPGRLRD 137

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S +KAVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+   I  LA
Sbjct: 138 HIERGALDLSEIKAVVLDEADEMLDMGFREDLEFILDAAPQDRRTLMFSATVPRQIAELA 197

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +QKDAVR++  +   QH DIDY A  VA ++R+NAI+N+LR H A+ AIVFCSTR +V
Sbjct: 198 KRFQKDAVRLSTINAREQHGDIDYVAHPVAPNERENAIINVLRQHEAEKAIVFCSTREAV 257

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           SR T  LA   F +V+LSGELSQ++RS+AL  M+DGRARVC+ATDVAARGIDLP+L+LVI
Sbjct: 258 SRLTSRLANRGFSIVSLSGELSQEQRSSALAAMKDGRARVCVATDVAARGIDLPNLDLVI 317

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +    LLHRSGRTGRAGRKG  V ++P   +R+AER+ + A ++  W+ AP+ + 
Sbjct: 318 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERVLQFAGITATWKGAPTADD 377

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           IR +D +R+L DP     ++ +E  + + LLA H PE++AA F+++ ++ L APEE++ V
Sbjct: 378 IRAKDKERLLADPALKVELEEEELAIANELLALHSPEQLAAAFVKLRQSRLPAPEEVSDV 437

Query: 438 SLV--SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
                 GRD      R  ++ G     F+   WFSLS+G +Q+AE RW++PM+CR+  + 
Sbjct: 438 DETSLRGRDAGSRGGRTAEITG----KFEDGIWFSLSLGHRQRAEPRWILPMICRAGHVT 493

Query: 496 RQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF 551
           ++ +GAI++  +  + E++        D+++R    ++   +K L               
Sbjct: 494 KKEVGAIKIFQNELYFEIAGSHGQRFADVVKREGTGEENATIKLLDARGGKIPAPPKEDS 553

Query: 552 KSKNSQDGATKRFKRFKGA 570
             +   D +    +R +GA
Sbjct: 554 FRRERSDRSGPPKRRPRGA 572


>gi|327540357|gb|EGF26943.1| cold-shock deAd box protein a [Rhodopirellula baltica WH47]
          Length = 862

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 172/603 (28%), Positives = 283/603 (46%), Gaps = 41/603 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +A++  GY   T +Q  I+   L  +DVL  +QTG+GKT AF L + S +   
Sbjct: 241 DLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVR 300

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
           + R      P  L +APTRELA+QV R      A  +G  VA   GG     + + L+ G
Sbjct: 301 SRR------PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRG 354

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH++   L++  L  +VLDEADEML++GF +D++F+L+ SP+ R++ +
Sbjct: 355 VQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVAL 414

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D  R+ I S+    + +  RA+ V+  D+ +A+  IL     
Sbjct: 415 FSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEET 474

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+ S     + L++  F  +AL+G++ Q+ R   +  ++ G+  V +ATDVA
Sbjct: 475 DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVA 534

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + +L  + E+ +HR GRTGRAGR G ++  +    +R+   +     
Sbjct: 535 ARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTK 594

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-DEKKMVDVLLAKHD---PEKIAAGF 420
             +     P+V  I E   +R  Q    + + Q     K +    A+      E IAA  
Sbjct: 595 QPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAAL 654

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR--------------------FRDDSRAFKVGGGSR 460
             + + G     +  P       DR                    F DD      G    
Sbjct: 655 AEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPLT 714

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
              +G + + L VG +   +   ++  +   +GI+ + IG I ++   T +++      D
Sbjct: 715 PVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPSD 774

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFKSKNSQDGATKRFKRFKGA 570
               LR+T    K + L+  G    DF G      ++  GF+            K F G 
Sbjct: 775 IYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFRKGKFSGNGGSGGKNFSGG 834

Query: 571 SKN 573
            ++
Sbjct: 835 KRS 837


>gi|32475237|ref|NP_868231.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445778|emb|CAD78509.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 931

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 172/603 (28%), Positives = 283/603 (46%), Gaps = 41/603 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +A++  GY   T +Q  I+   L  +DVL  +QTG+GKT AF L + S +   
Sbjct: 310 DLRAEVQKAVAASGYDKPTPIQAEIIPYMLDGRDVLAQSQTGTGKTAAFALPILSRVDVR 369

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
           + R      P  L +APTRELA+QV R      A  +G  VA   GG     + + L+ G
Sbjct: 370 SRR------PQVLVLAPTRELAIQVARSFTKYGADLSGFQVAAIYGGQDYEPQLKQLRRG 423

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH++   L++  L  +VLDEADEML++GF +D++F+L+ SP+ R++ +
Sbjct: 424 VQVVVGTPGRVIDHVKRGTLDLGSLDCLVLDEADEMLNMGFLEDVQFVLEKSPEGRQVAL 483

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  D  R+ I S+    + +  RA+ V+  D+ +A+  IL     
Sbjct: 484 FSATLPKPIRKIADEYLNDPARITIKSKTITAASVRQRALFVSPRDKIDALTRILEVEET 543

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+ S     + L++  F  +AL+G++ Q+ R   +  ++ G+  V +ATDVA
Sbjct: 544 DGVIVFTKTKDSTLSVAEKLSQQGFSAIALNGDMPQKVRERTIDQLKRGQLDVLVATDVA 603

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + +L  + E+ +HR GRTGRAGR G ++  +    +R+   +     
Sbjct: 604 ARGLDVPRISHVFNFDLPHDSESYVHRIGRTGRAGRSGQAIIFLTNAQRRQLRFIENTTK 663

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-DEKKMVDVLLAKHD---PEKIAAGF 420
             +     P+V  I E   +R  Q    + + Q     K +    A+      E IAA  
Sbjct: 664 QPIEIIDIPTVADINEARVRRFKQRITDVSADQDLTVYKDMIAQYAEESGKPMEMIAAAL 723

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR--------------------FRDDSRAFKVGGGSR 460
             + + G     +  P       DR                    F DD      G    
Sbjct: 724 AEMSQNGRPFLLKERPKKQRERSDRDNSRGRDSFDSNDRSGNRGSFGDDRPRRPKGRPLT 783

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
              +G + + L VG +   +   ++  +   +GI+ + IG I ++   T +++      D
Sbjct: 784 PVKEGMTRYRLDVGWQDGVKPGNIVGAVANEAGIDGEYIGPINIRDSHTLIDLPEGMPSD 843

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRG------YKSSGFKSKNSQDGATKRFKRFKGA 570
               LR+T    K + L+  G    DF G      ++  GF+            K F G 
Sbjct: 844 IYQTLRKTWVAGKRLNLEEAGDVVDDFEGDGGRSNFRKEGFRKGKFSGNGGSGGKNFSGG 903

Query: 571 SKN 573
            ++
Sbjct: 904 KRS 906


>gi|315443280|ref|YP_004076159.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315261583|gb|ADT98324.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 561

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 161/557 (28%), Positives = 267/557 (47%), Gaps = 19/557 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+++ GY + + +Q A +   L   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPAVLKAVADVGYESPSPIQAATIPAMLEGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          AL +APTRELA+QV        A+  V V    GG S   +   
Sbjct: 74  KIDTESRN------TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAG 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +
Sbjct: 128 LKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYK 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L 
Sbjct: 188 QVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +A
Sbjct: 248 TEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTITQLKDGTIDILVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  +PE+ +HR GRTGRAGR G ++  +    +     + 
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEKI 416
           R     +V    PSV+ + E+   +            G +  + +V+     HD     I
Sbjct: 368 RVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRALVEGYERDHDVPMADI 427

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA      R G        P      R    D S A +      +     + + ++VG +
Sbjct: 428 AAALALQSRNGEEFLMTEPPPEKRRERPDRGDRSDAPRKPR---ERRSDLATYRIAVGKR 484

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQ 532
            K     ++  +    G++R   G I ++ D + VE+ A    + +  L+ T    + IQ
Sbjct: 485 HKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGNTLKALQNTKIQGQLIQ 544

Query: 533 LKYLGGEKPDFRGYKSS 549
           L+   G KP      + 
Sbjct: 545 LQPDRGPKPHRGKPPTK 561


>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 584

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 157/580 (27%), Positives = 260/580 (44%), Gaps = 52/580 (8%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   +    A++E GY   T +Q   +   L   D++  AQTG+GKT AF L  
Sbjct: 1   MTTFTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +      A    AL + PTRELAVQV   +        +      GG  + R+ 
Sbjct: 61  IERIDPK------AMGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G +IV+GTPGRL DH+    L++S ++ VVLDEADEML++GF DDIE+IL+ +PK
Sbjct: 115 RALKRGVNIVIGTPGRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  ++SAT+   I  LA+ Y +    V I  E      I      +   D+   +  I
Sbjct: 175 DRQTALYSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+FC T+A V    + L    +    L G+LSQ  R   ++  R+ +  + 
Sbjct: 235 LDLEMPTSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR G++V ++    +R+   
Sbjct: 295 VATDVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKM---VDVLLAKHD 412
           + R     +     P++  +  R  +     L++ +   + QG  ++     + L  ++ 
Sbjct: 355 IERMTGAPIQRLRLPTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYS 414

Query: 413 PEKIAAGFLRIHRAGLCAPEEIT------------------------------------P 436
           P  +AA   ++         E                                       
Sbjct: 415 PTDLAAAAFKMMLGEPDLTAEDPLEMVEDEATFDARRGDRRDSRDNGRRGDRRDNGRAGE 474

Query: 437 VSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGI 494
                G DR     R    +  GG     +G +   + +G +Q      ++  +   SG+
Sbjct: 475 RPGERGGDRAARGPRSGGDRNNGGRSFREEGMTRLFVDIGREQGVRPADIVGAIANESGL 534

Query: 495 NRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
             ++IGAI +  + TFV+V  +  + +   +   +   +K
Sbjct: 535 PGRAIGAIDIFDNFTFVDVPDEAANRVLAALGRTQIRGVK 574


>gi|254504723|ref|ZP_05116874.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
 gi|222440794|gb|EEE47473.1| DbpA RNA binding domain family [Labrenzia alexandrii DFL-11]
          Length = 722

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 270/585 (46%), Positives = 377/585 (64%), Gaps = 38/585 (6%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           RGY  LT VQE++L       D+LVSAQTGSGKTVAFGLALAST+L E +      AP+A
Sbjct: 41  RGYETLTPVQESVLTEAPANADLLVSAQTGSGKTVAFGLALASTILGEEETLGKPGAPIA 100

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV  EL WLY + G V A C+GG+    ERR L  G HIVVGTPGRL D
Sbjct: 101 LAIAPTRELALQVKEELTWLYGEAGAVTASCVGGMDPRMERRTLDRGVHIVVGTPGRLRD 160

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLD+GFR+D+EFILD++P+ RR LMFSAT+   I  LA
Sbjct: 161 HIERGALDLSELRAVVLDEADEMLDMGFREDLEFILDAAPENRRTLMFSATVPKPIAELA 220

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +QKDAVR++  +   QH DIDY A  VA ++R+NAI+N+LR H A+ AIVFC TR  V
Sbjct: 221 KRFQKDAVRLSTINAREQHVDIDYIAHPVAPNERENAIINVLRLHEAEKAIVFCQTREGV 280

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           SR T  LA   F++V+LSGELSQ++R+ AL  M++G ARVC+ATDVAARGIDLP+L+LVI
Sbjct: 281 SRLTARLANRGFRIVSLSGELSQEQRTAALTAMKNGTARVCVATDVAARGIDLPNLDLVI 340

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +    LLHRSGRTGRAGRKG  V ++P   +R+AER    AN++  W+ AP+ + 
Sbjct: 341 HADLPTGKAALLHRSGRTGRAGRKGTCVLMVPFPRRRQAERTLHFANITATWKGAPTSDE 400

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           IR +D +R+L DP+    ++ +E+ +   LLA H  E++AA F+++ ++ L APEE+  +
Sbjct: 401 IRAKDKERLLADPVLSAELEEEERVIAGELLALHSAEQLAAAFVKLRQSRLPAPEEVGEL 460

Query: 438 SLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
           +  +  GRD      R+ ++     +NF+   WFSLS+G +Q+AE RW++P++CR+  + 
Sbjct: 461 NETALQGRDAGSRGGRSAEIK----NNFEDGVWFSLSLGHRQRAEPRWILPLICRAGHVT 516

Query: 496 RQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DKGIQLKYL---GGEKP------- 541
           ++ +GAI++  +  + E+S    +    TVK     ++ + +K L   GG+ P       
Sbjct: 517 KKEVGAIKIFQNELYFEISGKHGEKFASTVKREGTGEENVTIKLLDARGGQMPQPPKEDN 576

Query: 542 ------------------DFRGYKSSGFKSKNSQDGATKRFKRFK 568
                                     G++++  + G    ++   
Sbjct: 577 FRGGGNRGRGDRDRGPKDRGDRGDKGGYQNRRPRRGDAPDYEEMG 621


>gi|226365506|ref|YP_002783289.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
 gi|226243996|dbj|BAH54344.1| ATP-dependent DEAD-box RNA helicase DeaD [Rhodococcus opacus B4]
          Length = 587

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/583 (27%), Positives = 275/583 (47%), Gaps = 27/583 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +ALS+ GY + + +Q A + P L   DV+  AQTG+GKT AF + + S
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPILS 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +           +P AL +APTRELA+QV     ++     G+ V    GG S   +  
Sbjct: 72  KIDLTQ------KSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLS 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++S L  +VLDEADEML +GF++D+E IL  +P+ 
Sbjct: 126 GLRRGAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEY 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  ++K Y  D V + + S+    S+I  R V VA   + +A+  +L
Sbjct: 186 KQVALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +     + L    F   A++G++ Q +R   +  ++ G   + +
Sbjct: 246 EVEDFGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            +     +     PSV+ +  +   +        +S+  D   +   ++  ++ E     
Sbjct: 366 EKATRQPLAEMQLPSVDDVNAQRVSKFGDS--ITESLTSDNLALFRKMIEDYEQEHDVPL 423

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWF 469
             IAA      R G        P          R+        G    +        + +
Sbjct: 424 ADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQELATY 483

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTV 525
            ++VG + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT 
Sbjct: 484 RIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTR 543

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGATKRFKR 566
                IQL+   G      G      ++     +D   ++  R
Sbjct: 544 ISGVLIQLQPDSGPPSGRPGRGGRDDRAGGKFQRDRDNRKRPR 586


>gi|255324480|ref|ZP_05365597.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
 gi|255298386|gb|EET77686.1| cold-shock DEAD box protein A [Corynebacterium tuberculostearicum
           SK141]
          Length = 619

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 158/550 (28%), Positives = 276/550 (50%), Gaps = 23/550 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 62  LPEKILEAVAKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQID--- 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              + A  P AL +APTRELA+QV    +        V  +   GG +   +   L+ GA
Sbjct: 119 ---TKARHPQALVLAPTRELALQVADSFQSFAESLKGVEVLPIYGGQAYGIQLSGLRRGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++S L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 176 QVIVGTPGRVIDHLEKGSLDLSQLQFLVLDEADEMLNMGFQEDVERILEDTPDRKQVALF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  +   V + SE R + +I  R +L+    + +A   IL      
Sbjct: 236 SATMPNAIRRLSKQYLDNPAEVTVKSERRTNDNITQRFLLIPHRAKMDAFTRILEVINYD 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 296 AIIVFCRTKHETEEVAETLRDRGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 356 RGLDVERITHVVNFDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIERVTNA 415

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     PSV+ + E+  ++  Q     +S+   +      L+ K+        + IAA 
Sbjct: 416 RLEEMDLPSVDEVNEKRKEKFAQS--ITNSMDNKQADFFRTLVRKYSEDNNAAMDDIAAA 473

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDS----RAFKVGGGSRDNFKGSSWFSLSVGS 475
              + + G     E  P+         RDD     +    G G +        + L VG 
Sbjct: 474 LAVMLQGGKNFLMEDRPLPKPKRDRDRRDDRKRDFKGGGKGRGPKRPDGDFETYRLDVGK 533

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGI 531
           +Q      ++  +    G++ +  G I +    T V++  +     +D L+ T    + I
Sbjct: 534 RQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKNLDPAVLDRLKDTRISGQLI 593

Query: 532 QLKYLGGEKP 541
           +++   G  P
Sbjct: 594 KIQKDTGRPP 603


>gi|189347343|ref|YP_001943872.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189341490|gb|ACD90893.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 610

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 167/593 (28%), Positives = 277/593 (46%), Gaps = 32/593 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+   + +  AL E GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S 
Sbjct: 26  FSNLELAEPLLRALEEVGYEKPTPIQAQTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSN 85

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           ++         + P AL + PTRELA+QV                V   GG     + R 
Sbjct: 86  IVLSK------TEPQALVLTPTRELAIQVAEAFHRYAEYLKGFHVVPIYGGQDYGTQLRM 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+VVGTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+ILD +P+ R
Sbjct: 140 LKRGVHVVVGTPGRVMDHMRRGSLSLSSLQCLVLDEADEMLRMGFIDDVEWILDQTPESR 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+   I  +A+ + K    V I ++      I  R  +V  S + + +  IL 
Sbjct: 200 QVALFSATMPAPIRRIAQKHLKSPAEVIIQNKTTTVETIRQRYWIVGGSHKLDVLTRILE 259

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +      ++F  T+       + L    +   AL+G+++Q +R   +  ++DG   + IA
Sbjct: 260 FEPFDGILIFVRTKTMTLELAEKLQARGYAASALNGDMAQNQRERTVDQLKDGSLSIVIA 319

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + 
Sbjct: 320 TDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIE 379

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-KIAAG 419
           +     +     PS E I ++   +  Q     D+I  ++ +    LL ++  E  +   
Sbjct: 380 KATRKRIELMELPSTEIINDKRVAKFKQR--ITDTIAAEDLEFYTRLLEQYCREHDVTEL 437

Query: 420 FLRIHRAGLCAPE-------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------ 466
                 A +   E       +    +   GRDR     R+ +  G SR   +        
Sbjct: 438 EAAAALASMFQGETPLLLSSKPERPARQEGRDRPDSRDRSERDRGASRSPKRDGLYSDER 497

Query: 467 -SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
              + + VGS    +   ++  +    G++ +++G I V    + VE+ A   + +   +
Sbjct: 498 RESYRIEVGSTHGVKPGNILGAILNEVGLDPEAVGRITVNDTYSTVELPAGMPNEVFHEM 557

Query: 526 KLDK--GIQLKYLGGEKPDFRGY----KSSGFKSKNSQDGATKRFKRFKGASK 572
           +  +  G QL+    E+    GY    K +G+K K+        F   K   K
Sbjct: 558 RKVRVCGRQLRLTKSEERSQSGYAGTGKRTGYKPKSDSKSEPSYFTGHKKKRK 610


>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
 gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
           Z]
          Length = 656

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/543 (28%), Positives = 256/543 (47%), Gaps = 30/543 (5%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F    I + + +A+ + G+   T +Q   +   L  KDV   AQTG+GKT AFG+ + 
Sbjct: 5   KTFAEFAISEELLQAIGDMGFEEPTPIQAMAIPQILDGKDVTGQAQTGTGKTAAFGIPII 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
             L  +N          AL ++PTRELA+Q   E    +  K G+ V    GG  + R+ 
Sbjct: 65  ERLDPDNKNV------QALVLSPTRELAIQTAEEFSRLMKYKKGLNVVPIYGGQPIERQL 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    +V+GTPGR+ DHI+   L++  +   +LDEAD+MLD+GFR+DIE I   +PK
Sbjct: 119 RALKGTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQMLDMGFREDIEDIFRDTPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+   I  + + +Q+D   V I  +      I+   + V   D+  A+   
Sbjct: 179 DRQTILFSATMPQPILDITRRFQRDPQFVKITRKELTVPQIEQTYIEVRERDKLEALCRT 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  + A+VFC+T+ +V      +    + V AL G++ QQ+R   +   R G   V 
Sbjct: 239 LDMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ D+++V + ++  + E  +HR GRT RAGR G SV  +      +   
Sbjct: 299 IATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPREIYKLRD 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL-------------FLDSIQGDEKKMVD 405
           + R A + +   P P+++ + E   Q  L                  ++ +   E  +  
Sbjct: 359 IQRYAKIQIAKTPLPTLDDVAEMKQQIFLDKVRDIMAAGNLELYLPLVEQLLETETDVDS 418

Query: 406 VLLAKHDPEKIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
              ++    ++AA  L++H          EEI P+                  G      
Sbjct: 419 ESTSEITSIQVAAALLKMHLDSGKNAAQSEEIKPLQPSPSSSETFTPGTVENSGAEP--- 475

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
             G   F +S+G  Q+   + ++        I   SIG I +  + ++V+V  +  +L+ 
Sbjct: 476 --GMVRFRISLGKNQQIRPKDIVGAFAGECDIPGSSIGRIDLYNNYSYVDVPLEHANLVA 533

Query: 523 RTV 525
             +
Sbjct: 534 EVM 536


>gi|85706796|ref|ZP_01037887.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
 gi|85668589|gb|EAQ23459.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius sp. 217]
          Length = 662

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 283/570 (49%), Positives = 379/570 (66%), Gaps = 21/570 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +  AL+ RGY  LT VQEA+ +P L   D+LVSAQTGSGKTV FGLA+A TLL   +R
Sbjct: 22  PALSNALAARGYETLTPVQEAVTDPALSGSDLLVSAQTGSGKTVGFGLAIAPTLLDGAER 81

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             PA+APLAL +APTRELA+QV REL WLYA+ G  +  C+GG+    ERR L+ GAHIV
Sbjct: 82  LPPAAAPLALIVAPTRELALQVMRELSWLYAEAGARLVSCVGGMDARDERRALERGAHIV 141

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRLCDHI    L+++ L+A+VLDEADEMLDLGFR+D+EF+L ++P +RR LMFSAT
Sbjct: 142 VGTPGRLCDHINRGALDMTSLRAIVLDEADEMLDLGFREDLEFMLAAAPAERRTLMFSAT 201

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  LA+ +Q+DA RV   +  +QH+DI Y+A+ V   D + A++N+LRYH A+NAI
Sbjct: 202 VPPMIAKLAEKFQRDAHRVTTLTGAKQHADISYQALTVVPHDAEGAVINLLRYHDAQNAI 261

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +TRA V+R T  LA   F VV+LSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 262 VFANTRAMVARLTARLANRGFAVVSLSGELSQAERTHALQAMRDGRARVCVATDVAARGI 321

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HAEL +N E LLHRSGRTGRAGRKG+S  ++      +AERL + A ++  
Sbjct: 322 DLPNLDLVVHAELPTNSEGLLHRSGRTGRAGRKGISALIVAVKSANKAERLLKFAKITAE 381

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   P+ + I  +D +R+L DP++ ++    E      LLA H PE IAA +LR++++  
Sbjct: 382 WTTPPTPDDIEAKDRERLLSDPVWSETPSETEAAFAAELLALHSPEVIAAAYLRLYKSRW 441

Query: 429 CAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            APEE++ P S    R+R                 F  S WF+LSVG+  +AEARWL+P+
Sbjct: 442 SAPEELSAPGSPAPARER---------------AAFGPSRWFALSVGNNDRAEARWLLPL 486

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYLGGEKPDF 543
           LCR+  +++ +IGAIRVQ   TFVE++   V      +    +LD+GI  + L    PD 
Sbjct: 487 LCRAGNMDKSAIGAIRVQASETFVELAEAAVPGFLSALGEGGQLDEGIIARQLDSA-PDL 545

Query: 544 RGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                +  + +  +     R  R + A + 
Sbjct: 546 GSAPRAPREDRPERAPRAPREDRPERAPRE 575


>gi|295689355|ref|YP_003593048.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431258|gb|ADG10430.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 732

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 269/566 (47%), Positives = 359/566 (63%), Gaps = 2/566 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
              +  AL+ +GY   T VQ A+L  D  ++D+LVSAQTGSGKTVAFGLA A TLL E +
Sbjct: 7   HPALERALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGEAE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F  A+ PLAL IAPTRELA+QV REL WLYA+   VV  C+GG+   RE+R L  GAHI
Sbjct: 67  TFGQAAEPLALVIAPTRELAMQVNRELTWLYAEAKAVVVNCVGGMDARREQRALNYGAHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL DHI    L++S L+  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSA
Sbjct: 127 VVGTPGRLRDHIERGHLDLSKLQVAVLDEADEMLDMGFREDLEFILDAAPPERRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  I  LAK YQ DAVR++    N  H DI+YRAV VA ++ ++A+VN+LR+  A  A
Sbjct: 187 TLARDIVELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +TR SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG
Sbjct: 247 LVFANTRESVRGLHNKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +DLPDL LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V  
Sbjct: 307 LDLPDLGLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEA 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            W  APS ++IRE+D +R+L+DP+F ++   ++  + + +LAK  P +IAA  +R  RA 
Sbjct: 367 DWGGAPSADSIREKDQERLLEDPIFAEAATEEDIALAEAMLAKRTPVEIAAALIRTRRAK 426

Query: 428 LCAPEEI--TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           L +PE+I   P        R R      +     R + +GS WF +SVG +  A+ +WL+
Sbjct: 427 LPSPEDIYDDPRHGADPGPRLRTGEPGERPEREPRVSMEGSEWFRISVGRRGNADPKWLI 486

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
           PM+CR   + ++ IGAIR+    T  E+SA+        V+      +       P  RG
Sbjct: 487 PMICRLGHVTKKDIGAIRIFDYDTKFEISAEAATKFGAAVQSTVREDVSITPTTAPAPRG 546

Query: 546 YKSSGFKSKNSQDGATKRFKRFKGAS 571
            +         ++   +  +      
Sbjct: 547 ERPPRDPDAPRREFKPRAPREDGPRP 572


>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
 gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
          Length = 606

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 164/591 (27%), Positives = 281/591 (47%), Gaps = 26/591 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A+++  +V  + +Q+  +   L   DVL  AQTGSGKT AF L L +
Sbjct: 7   TFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       G+ V    GG     + R
Sbjct: 67  QIDPNQ------RHPQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   LN+S LK++VLDEADEML +GF DD+E ++   P+K
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + +  D   V I +  R   DI     LV    ++ A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            +     +     P+ + + E+  ++    +   L    ++   + + ++  A  D E++
Sbjct: 361 EQLMKKPIDPVAIPNHQVLMEKRREKFKAKISKQLEHHDLEKYRELLENLFTADQDHEEL 420

Query: 417 AAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFSLSV 473
           AA  + +  +  L  P +    +L S R R   + R  +  G       G     + + +
Sbjct: 421 AAAMMMLQEKQKLILPPDPEVRNLRSERGRRDRNERNDRRNGREHRENNGVAMDLYRIEL 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR-----RTVKLD 528
           G +   E R ++  +     IN + IG I++    + +E+     + +      +   L+
Sbjct: 481 GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDRYSTIELPKGIPNHIVQHFAHKARVLN 540

Query: 529 KGIQLKYLG-----GEKP-DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           K +Q+  LG       +P + R       ++         R   F    KN
Sbjct: 541 KQMQMSLLGPAGGANNQPFEERRGSRRDQRNSGRNSRPNYREDSFNKERKN 591


>gi|144899404|emb|CAM76268.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 583

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 263/561 (46%), Positives = 356/561 (63%), Gaps = 16/561 (2%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   P    + +ALS+R Y +LTSVQ A+L+P  R +D+LVSAQTGSGKTVAFGLA+
Sbjct: 1   MDFF---PAGHPLTQALSQRNYTDLTSVQNAVLDPAARGRDLLVSAQTGSGKTVAFGLAI 57

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A TLL +   F  AS PLAL +APTRELA+QV REL WLY + G  V  C+GG+    E+
Sbjct: 58  ADTLLGDALAFGQASEPLALIVAPTRELALQVQRELTWLYQQAGGQVVACVGGMDPRAEQ 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  GAHIVVGTPGRL DH+    L    L+AVVLDEADEMLDLGFR+D+EFIL+++P+
Sbjct: 118 RMLGRGAHIVVGTPGRLRDHLERGALRTGQLRAVVLDEADEMLDLGFREDLEFILEATPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR L+FSAT+   I  LAK YQ+D+ R+ +++    H+DI+YRAV VA ++ ++A+VN+
Sbjct: 178 NRRTLLFSATLPKLIIALAKRYQRDSFRIAVSAGEHGHADIEYRAVRVAPNEIEHAVVNL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LRY  +  A+VFC+TR SV     +L E  F  VALSGEL Q ER+ +LQ +RDGRARVC
Sbjct: 238 LRYFESPGALVFCNTRESVRHLQAILQERGFAAVALSGELGQNERNQSLQALRDGRARVC 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGIDLP++ LVIHAEL  N   L HRSGRTGRAGRKG+SV ++  + +R+AE 
Sbjct: 298 VATDVAARGIDLPNINLVIHAELPQNGPTLQHRSGRTGRAGRKGVSVLLVQLSRRRKAEL 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
             +   V   W  APS E IR+ D +R++Q PL       ++ +M   LLA+   E++AA
Sbjct: 358 QLQSVGVQAAWSGAPSAEDIRQLDRERLIQSPLLTGETTEEDLEMARTLLAQRPAEEVAA 417

Query: 419 GFLRIHRAGLCAPEEI------TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             +R++R+ L A EE+         S      R   + R  +           S WF L+
Sbjct: 418 ALVRLYRSQLPAAEELFDPGSGPAPSTGPREPRAPREPREPRGDRPGAMAPGESVWFRLN 477

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KG 530
           VG ++ A+ RWL+PM+CR   I +Q IG+IR+    T  E+ A         +     + 
Sbjct: 478 VGRQKDADPRWLIPMICRHGKITKQEIGSIRIFERETRFEIEAGTAARFTAAIAQMERRD 537

Query: 531 IQLKYLG---GEKPDFRGYKS 548
           ++++ LG   G +P+     +
Sbjct: 538 VRIEPLGESHGAEPERAARTA 558


>gi|192361806|ref|YP_001982445.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
 gi|190687971|gb|ACE85649.1| ATP-dependent RNA helicase DeaD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 157/601 (26%), Positives = 281/601 (46%), Gaps = 37/601 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+   GY   + +Q A +   L   D+L  AQTG+GKT AF L L S
Sbjct: 30  LFADLALSAPVLKAIQAVGYEVPSPIQAAAIPILLDGGDILGMAQTGTGKTAAFALPLLS 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L          + P  L +APTRELA+QV    +   A       +   GG  +  + R
Sbjct: 90  KLDLSQ------NEPQILVLAPTRELAIQVAEAFQKYAADMPGFHVLPIYGGQDMTSQLR 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+R   LN+++LK++VLDEADEML +GF DD+E+IL+ +P+ 
Sbjct: 144 QLKRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPET 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+   I  +A NY +DA  + IAS  +   +I+    +V+ +++ +A+  IL
Sbjct: 204 RQTALFSATMPREIRKVADNYLRDAKEIKIASTQQTGDNIEQVYWMVSGTNKLDALTRIL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +     + L    +    L+G+++QQ R   ++ ++  +  + I
Sbjct: 264 EVEPFDGMIIFVRTKTATVELAEKLEARGYSAAPLNGDMNQQLRERTIERLKTSKLDIVI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V++ ++  + E  +HR GRTGRAGR G ++  +    +R    +
Sbjct: 324 ATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRSGKAILFVAPREKRLLYTI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DP 413
            +     +     PS   + +    +  Q    + + Q D     + LLA++       P
Sbjct: 384 EKATRKPITLMELPSGATVTKHRIDQFTQQITDVLTEQSD-LSFFNDLLAEYGRTNDVSP 442

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGS 466
           E+IA+    + +       + T V            R    +   + +       + +  
Sbjct: 443 EQIASALAYLVQKERPLQVKFTDVKPERNDRSERRERGERDERRGSREDRPRRDRSDENM 502

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR 522
             + + VG    A    ++  +   +GI  + IG I++  + + V++ A    + +  L+
Sbjct: 503 ERYRIEVGRNHDARPGDIVGAIANEAGIESRFIGHIKLFDEFSTVDLPAGMPKEVLQHLK 562

Query: 523 RTVKLDKGIQLKYLGG----------EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           +    ++ +++    G          +KP F+     G      +D       +    S+
Sbjct: 563 KVRVRNRPLEISLDQGGSRGGYRDNSDKPRFKERDFGGRDKPRFKDRDNSGSGKPGPRSR 622

Query: 573 N 573
            
Sbjct: 623 K 623


>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
 gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
          Length = 571

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 156/583 (26%), Positives = 275/583 (47%), Gaps = 35/583 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI + I  A+ + G+   + +Q   +   L   DV+  AQTG+GKT A+ + + 
Sbjct: 1   MKFDELNIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  +         P A+ + PTRELAVQV  E+  L      +  +   GG  + R+ 
Sbjct: 61  QKINPD------VKKPQAIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+VGTPGR+ DH+R K +    +  V+LDEADEMLD+GFR+D+E IL  +P+
Sbjct: 115 KSLKAGVQIIVGTPGRVMDHMRRKTVKFDSVSMVILDEADEMLDMGFREDMETILTETPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I  +A+ +QKDA  + +  +    S+ID     V   ++   +  +
Sbjct: 175 ERQTVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPKNKTEILSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K ++VFC+T+  V      L    +    + G++ QQ+R   +   R G+  + 
Sbjct: 235 IDIYNPKLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+  +++V + +L  + E  +HR GRTGRAG+ G+++  I      + + 
Sbjct: 295 IATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------D 412
           + R     ++ +P PS++ ++      I       + I+ DE + +  ++ +H       
Sbjct: 355 IERYCKTKILAKPIPSLDDVKNTKMDGIFDK--IKEMIEADEHRAMLDMVEEHVNQEDYT 412

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
              +AA  L++                    D                 +        ++
Sbjct: 413 SMDMAAALLKMIVG-----------------DTLDRIDEVENFHFDENADTSRMVRLFIN 455

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           VG K K     ++  +   SG+  + +GAI +  + TFV+V A   + +   +  +  I+
Sbjct: 456 VGKKDKITPANILGAIAGESGMPGRLVGAIDMMDNYTFVDVPAKHAEAVLAAMNDNVLIK 515

Query: 533 LKYLGGEKPDFRGYKSSGFKSKN--SQDGATKRFKRFKGASKN 573
            + +  EK +     +   KSK    +     R K  K   + 
Sbjct: 516 GRKVNVEKANVSAKPARKSKSKPDTRRKKDESRGKHDKLKERR 558


>gi|163744883|ref|ZP_02152243.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
 gi|161381701|gb|EDQ06110.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanibulbus indolifex HEL-45]
          Length = 699

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 286/548 (52%), Positives = 362/548 (66%), Gaps = 18/548 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q I +AL+++GY  LT+VQEA+ +P L + D+LVSAQTGSGKTV FGLA+A TLL ++  
Sbjct: 3   QTIADALAQQGYETLTAVQEAVTDPALNDADLLVSAQTGSGKTVGFGLAIAPTLLGDDTH 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY K G +V  C+GG+    ERR L  GAHIV
Sbjct: 63  FGQAGAPLALIIAPTRELAMQVSRELTWLYGKAGAIVTTCVGGMDTRTERRALDRGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRLCDHI+   +N+  ++AVVLDEADEMLDLGFR+D+EFIL  SP+ RR L+FSAT
Sbjct: 123 VATPGRLCDHIKRNNINLDAIRAVVLDEADEMLDLGFREDLEFILSESPEDRRTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQ+DA R+    E +QHSDI+YRA+ V   D +NAI+N+LR++ AKNAI
Sbjct: 183 VPAAIAKLAKSYQRDAQRITTVGEAKQHSDIEYRALNVHPRDTENAIINVLRFYEAKNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T       F VVALSGEL+Q ER+NALQ +RDGRARVCIATDVAARGI
Sbjct: 243 VFCNTRAAVARLTSRFTNRGFSVVALSGELTQSERTNALQALRDGRARVCIATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHA+L SN + LLHRSGRTGRAGRKG+S  ++P  ++ +A RL   A + V 
Sbjct: 303 DLPNLELVIHADLPSNSDTLLHRSGRTGRAGRKGVSALIVPAKLRSKANRLIGGAKLKVE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W   PS   +   D  R+L D  + D I  D +  V  L+ +   E++A  F+ ++RA  
Sbjct: 363 WAAPPSAAEVNAADEARLLADSAWSDPIPEDAEGFVANLVEQFSAEQLATAFVNLYRARQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+       G D+ R               F  S WFS+S G    AE R L+PML
Sbjct: 423 SAPEELAEPG-APGDDKPR-------------PAFGKSVWFSISTGRNDGAEPRTLLPML 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGEKPDFR 544
           CR   + +  IGAIRVQ   +FVEV    V  L       +KL++G  L  L       R
Sbjct: 469 CRRGDLTKDDIGAIRVQGSHSFVEVLETSVPGLLSALGGDMKLEEGAVLTQLDKAPDLAR 528

Query: 545 GYKSSGFK 552
           G K +G +
Sbjct: 529 GPKPAGNR 536


>gi|254476157|ref|ZP_05089543.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
 gi|214030400|gb|EEB71235.1| cold-shock deAd-box protein a [Ruegeria sp. R11]
          Length = 724

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 278/551 (50%), Positives = 356/551 (64%), Gaps = 22/551 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK        + +AL  RGY  LT VQ A+  P+L   D+LVSAQTGSGKTV FGLA+A 
Sbjct: 1   MKT------ALEQALQARGYEQLTPVQLAVTAPELENSDLLVSAQTGSGKTVGFGLAMAP 54

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL + +    A+ PLAL IAPTRELA+QV REL WLYA+ G  V   +GG+ +  ERR 
Sbjct: 55  TLLGDAETLGRATLPLALVIAPTRELALQVKRELGWLYAEAGAHVVSTVGGMDMRDERRA 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVV TPGRL DHI    +++S ++AVVLDEADEMLDLGFR+D+EFIL  SP+ R
Sbjct: 115 LERGAHIVVATPGRLRDHINRGSIDLSQVRAVVLDEADEMLDLGFREDLEFILGESPEDR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LA+ Y KD  R+   +E  QH+DI+Y+ + VA  D ++AI+N+LR
Sbjct: 175 RTLMFSATVPAGIARLAETYLKDHQRIKTLAEASQHADIEYQMLAVAQRDTEHAIINVLR 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YH A NAIVFC+TRA V+R T  L+   F VVALSGEL+Q ERSNALQ +RDGRARVC+A
Sbjct: 235 YHEAPNAIVFCNTRAVVNRLTTRLSNRGFSVVALSGELTQSERSNALQSLRDGRARVCVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L S+ E LLHRSGRTGRAGR+G+S  ++P   + +A RL 
Sbjct: 295 TDVAARGIDLPKLDLVIHADLPSSHETLLHRSGRTGRAGRQGVSALIVPPKAKGKALRLL 354

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R A ++    PAPS + +R RD +R+L DP + D++   E   V  LL +  PE++A  +
Sbjct: 355 RSAKITAETTPAPSADQVRARDFERLLADPAWSDAVSEGEAPAVAELLERFAPEQLAVAY 414

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR+      APEE++        DR     RA          F  S WFS+S G K  AE
Sbjct: 415 LRLFHQRHSAPEELSD----PQADRRERQERAP---------FGPSVWFSVSGGRKAGAE 461

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLG 537
            R L+P LC + G+ +  IGAIRVQ D ++VEV     D     VK   L++G  +  L 
Sbjct: 462 PRRLLPALCNAGGLTKDDIGAIRVQFDQSYVEVREASADAFWGAVKHEGLEEGASVTRLD 521

Query: 538 GEKPDFRGYKS 548
                 +G + 
Sbjct: 522 KAPDLPKGPRP 532


>gi|54026656|ref|YP_120898.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018164|dbj|BAD59534.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 602

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 162/581 (27%), Positives = 285/581 (49%), Gaps = 26/581 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  A+++ GY + + +Q A + P L   DV+  AQTG+GKT AF + +  
Sbjct: 30  SFADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTAAFAIPILM 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            L            P AL +APTRELA+QV      +     G+ V    GG S   +  
Sbjct: 90  GLEVTG------RQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQLS 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF++D+E IL  +P++
Sbjct: 144 GLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTPRE 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  ++K Y ++ V + + ++ + +++I  R V V+   + +A+  +L
Sbjct: 204 KQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTRVL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+       + L    F   A++G+++Q +R   +  ++ G   + +
Sbjct: 264 EVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDILV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 324 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLKAI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSVE +  +   +        +++      +   L+  ++ E     
Sbjct: 384 ERATRHPLEEMQLPSVEDVNAQRVSKFGD--AITENLSSANLPLFRKLIEDYEREHNIPL 441

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGS--SWF 469
             IAA        G     E  P      R      +R F  + GGGS     G+  + +
Sbjct: 442 VDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARRFDEERGGGSHHRATGTELATY 501

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTV 525
            +SVG + +     ++  +    G+ R   G I ++PD + VE    + A+ ++ LRRT 
Sbjct: 502 RISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAQLPAETLEALRRTR 561

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                IQL+   G  P  R +     + +++     +R  R
Sbjct: 562 ISGVLIQLQLDQGP-PAQRAFSRGPRRDRDAGKRPERRKPR 601


>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
 gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
          Length = 598

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 161/585 (27%), Positives = 274/585 (46%), Gaps = 33/585 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL++ GY + +++Q   + P L   D++  AQTG+GKT AF L + + L    
Sbjct: 15  LPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
              + A  P AL + PTRELA+QV    +     + G  V    GG     + R LQ G 
Sbjct: 72  ---TKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQLRQLQRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+R   L++S LK +VLDEADEML +GF DD+E+IL+ +P  R++ +F
Sbjct: 129 HIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLRMGFIDDVEWILEQTPATRQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +AK + +    + I  +   ++ I  R  ++A   + +A+  IL      
Sbjct: 189 SATMPDAIRRIAKTHLQSPQEITIKRKTVTNASIRQRVWIMAGVQKLDALTRILETEDYD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR +       LA   F   AL+G+++Q +R   +   + G+  + +ATDVAA
Sbjct: 249 GVIIFVRTRIATQELADKLAARGFATAALNGDIAQNQREKTVDSFKRGQLDLLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++    +  +R    + R    
Sbjct: 309 RGLDVDRVSHVINYDIPNDPEAYIHRIGRTGRAGRTGEAILFAAKRERRLLHAIERTTGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     PS E + ++ A R        +++   E      L+  +  E      ++AA 
Sbjct: 369 KIDQMTLPSAEQVVDKRAARF--KARITETLAASELSSARELVESYQQEFGVPVVEVAAA 426

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR------------AFKVGGGSRDNFKGSS 467
            + + +     P         + R    D S               +      D   G  
Sbjct: 427 LVVMSQGNALTPAPEPERKPRTARAERDDSSSKAPRPPRSDAKAKPRPKRAEGDAEAGMM 486

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRR 523
            + L VG     +   ++  +   + I  Q IG I++  D + +++      +    L++
Sbjct: 487 RYRLEVGHDHGVKPGNIVGAIANEAEIESQYIGRIQIFDDHSIIDLPEGMPKEIFKHLQK 546

Query: 524 TVKLDKGIQLKYLG--GEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                + +++   G   + P  R    +  K K  +  + K  KR
Sbjct: 547 VWVSGQQLRISKAGESDQAPAVRATGDAPAKRKPKKTASKKPRKR 591


>gi|307326471|ref|ZP_07605666.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306887879|gb|EFN18870.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 559

 Score =  313 bits (801), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 166/555 (29%), Positives = 268/555 (48%), Gaps = 22/555 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+  GY   T +Q   + P L  +D+L  A TG+GKT AF L +   +  + 
Sbjct: 17  LRPELLRALAGLGYEEPTPIQREAIPPLLDGRDLLGQAATGTGKTAAFALPVLQRISQDG 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P+    AL + PTRELA+Q    +       G  V    GG  + R+ R L+ G  
Sbjct: 77  GGAEPS----ALVLVPTRELAMQASEAIHRYGRDLGTRVLPVYGGQPIGRQLRALERGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  L+ +VLDEADEMLD+GF +DI+ IL+ +P  R+ ++FS
Sbjct: 133 VVVATPGRALDHIGRGTLRLDSLETLVLDEADEMLDMGFAEDIDAILEGTPADRQTVLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  +A+ + +  VR+ I  E     +   +   A +VA + +  A+  +L    
Sbjct: 193 ATMPARIDAMARRHLRGPVRIQIEREKPAPGETPKVRQSAYVVARAQKPAALGRVLDVES 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVFC TR  V + T+ L    ++  AL G + Q++R   +  +R G A + +ATDV
Sbjct: 253 PEATIVFCRTRDQVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRVRGGTADLLVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 313 AARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKAIERTT 372

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAG 419
              +  E  P+V  +R R  +  L      +SI  D+     V++     + D   +A  
Sbjct: 373 RRQIRVEKVPTVADLRARRLE--LTRAALQESIVEDDLDRFRVVVETLTDEFDVMDVALA 430

Query: 420 FLRIHRAGLCA---PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            +++      A    EEI  V+   GR          +   G+R   +G +   +  G  
Sbjct: 431 AVKLAHEAGGAAVDEEEIPEVAPRGGRGDREGRGAPGRGPRGTRAPAEGMTRLFIGAGRS 490

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                + L+  +   S ++ + IG+I +    + VEV A  VD + R +   +G  LK  
Sbjct: 491 AGIRPQDLVGAIAGESRLSGRDIGSIEIADRFSLVEVPASAVDEVIRAL---RGTTLK-- 545

Query: 537 GGEKPDFRGYKSSGF 551
            G KP  R  +    
Sbjct: 546 -GRKPIVRRERDRAG 559


>gi|78048530|ref|YP_364705.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036960|emb|CAJ24661.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 648

 Score =  313 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 283/629 (44%), Gaps = 67/629 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 26  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 86  NADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P +
Sbjct: 140 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPAQ 199

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 200 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 260 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 320 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 379

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 380 ERATRQPIEEMQLPSVDAVNDTRVARFM--SRITETLAGGQIDMYRDLLQRYEAENNVPA 437

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDS-------------- 450
             IAA   ++ +             A E+  P       DR                   
Sbjct: 438 IDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADGE 497

Query: 451 -------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                        R  +      +   G   + + VG     +   ++  +   +G+  +
Sbjct: 498 RAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLESR 557

Query: 498 SIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF-RG 545
            IG I +Q D + +++ AD     +  L++     + + ++ L          KP F RG
Sbjct: 558 YIGRIDIQDDYSILDLPADMPRELLQHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPRG 617

Query: 546 YKSSGFK--SKNSQDGATKRFKRFKGASK 572
            K SG         D A    ++     +
Sbjct: 618 GKPSGRPNGPGRPMDRAGAPHRKGPPKPR 646


>gi|27380673|ref|NP_772202.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110]
 gi|27353838|dbj|BAC50827.1| cold-shock dead-box protein A [Bradyrhizobium japonicum USDA 110]
          Length = 650

 Score =  313 bits (800), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 270/576 (46%), Positives = 362/576 (62%), Gaps = 21/576 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  +   +  AL+ER Y   T VQ A+L  +   +D+LVSAQTGSGKT+A+GLALA  L
Sbjct: 2   SFPTMSPPLARALAERNYDRPTPVQLAVLTEEAAGRDLLVSAQTGSGKTLAYGLALAKDL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   +RF  A APLAL +APTRELA+QV REL WLY      V  C+GG+   RE+R+L 
Sbjct: 62  LDGIERFERAGAPLALIVAPTRELALQVQRELAWLYEHADGRVVSCVGGMDPRREQRELA 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRLCDH+R   L+IS LKAVVLDEADEML+LGFR+D+EFIL+++P+ RR 
Sbjct: 122 AGAHIVVGTPGRLCDHLRRGRLDISELKAVVLDEADEMLNLGFREDMEFILETTPETRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT    I  LAK YQ+ A R+ +A +   H+DI+YRA+ +A +D ++A+VN+LR+ 
Sbjct: 182 LLFSATFPRGIVALAKQYQQQAFRIEVAGDEGGHADIEYRAIRIAPADVEHAVVNVLRFF 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A +A+VFCSTR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGRARVC+ATD
Sbjct: 242 EAPSALVFCSTRDAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP L+LVI A+L ++ E + HRSGRTGRAGRKG SV ++P   +RRAE L   
Sbjct: 302 VAARGIDLPSLDLVIQADLPNDAEVMQHRSGRTGRAGRKGTSVLLVPPARRRRAELLLNL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           + +  VW  AP  + IR+ D +R ++D LF +    D+  +   LLA+  PE IAA   R
Sbjct: 362 SGIDAVWGTAPQADEIRKLDHER-MKDVLFTEETTADDLVLAQALLAERSPEDIAAALAR 420

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------------GS 466
           ++RA L +PE+I      +GR R        +  GG     +                GS
Sbjct: 421 LYRARLPSPEDIIDPGERAGRPRDDRGRDNVRAQGGDDRPERARPKSGKSSSKHGMAEGS 480

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            WF  ++G ++ AEARWL+PM+CR  GI++  IGAI++    T  E+S    D     +K
Sbjct: 481 VWFRANIGRRKNAEARWLLPMICRRGGIDKGDIGAIKIMDTTTEFEISERVADSFAAKIK 540

Query: 527 ---LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
               +  I+L+ +  + P  +       K    + G
Sbjct: 541 RPDKEDNIRLEPM-ADAPQRQAPSEERSKPPRRESG 575


>gi|160881936|ref|YP_001560904.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160430602|gb|ABX44165.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 527

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 162/542 (29%), Positives = 260/542 (47%), Gaps = 35/542 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+ E GY  +T +Q   +   L  KD++  AQTG+GKT AF + +   +  +
Sbjct: 9   ELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIPILQKIDPK 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                      A+ + PTRELA+QV  E+         + A+   GG  + R+ R L+ G
Sbjct: 69  ------VKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLKAG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ DH+R K +    +  + LDEADEML++GFR+DIE IL   P+ R+ L+
Sbjct: 123 VQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ YQKDA  V +  +      I+     V   ++ + +  +L  +  
Sbjct: 183 FSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPKNKVDVLSRLLDMYSP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VFC+T+  V      L+   F    L G+L QQ+R   +   R G+A + +ATDVA
Sbjct: 243 KRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR G +  ++      +   + R   
Sbjct: 303 ARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQRYCK 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAG 419
             +   P PSV  +    A++IL D +       D  KM+ ++ AK     +    +AA 
Sbjct: 363 TKIKVMPIPSVNDVTAVKAEKIL-DRINELMDAEDLTKMISIIEAKINESDYTALDVAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL++       PEE                        G     +G     +++G KQ  
Sbjct: 422 FLKMAMGSDSQPEEQAVPDF------------------GDTGAEQGMVRLFINLGKKQNI 463

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLDKGIQLKY 535
               ++  +   +G+  + IG+I +    TFVEV     AD + +++ +    K I ++ 
Sbjct: 464 RPGDILGAIAGETGMPGKLIGSIDMYDKYTFVEVPREYAADVIQVMKESKIKGKSINIEP 523

Query: 536 LG 537
             
Sbjct: 524 AN 525


>gi|56698644|ref|YP_169021.1| DEAD-box ATP dependent DNA helicase [Ruegeria pomeroyi DSS-3]
 gi|56680381|gb|AAV97047.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Ruegeria pomeroyi
           DSS-3]
          Length = 709

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 279/567 (49%), Positives = 376/567 (66%), Gaps = 20/567 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +AL+ERG+  LT VQ+A+ +P+L   D+LVSA+TGSGKTV FGLA+A TLL E +  
Sbjct: 31  PLLDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLGEAETL 90

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +APLAL +APTRELA+QV REL WL+AK G  +A CIGG+    ERR L+ GAHIVV
Sbjct: 91  GPPAAPLALIVAPTRELALQVSRELTWLFAKAGGRIATCIGGMDARTERRTLERGAHIVV 150

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL DHI    L+++ ++AVVLDEADEMLDLGFR+D+EF+L  +P+ RR L+FSAT+
Sbjct: 151 GTPGRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFSATV 210

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           SPAI  LAK YQ+ A R++     RQHSDI Y+AV V+  D ++AI+N+LR+H A  AIV
Sbjct: 211 SPAIAELAKTYQRQAARISTLGGERQHSDISYQAVQVSGGDGEHAIINLLRFHDAPTAIV 270

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TRA+V+R T  LA   F VV+LSGELSQ ERS+ALQ MRDGRARVC+ATDVAARGID
Sbjct: 271 FANTRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVCVATDVAARGID 330

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LP+L+LVIHA+L +N E LLHRSGRTGRAGRKG+S  ++P  + ++A RL + A +   W
Sbjct: 331 LPNLDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISKKASRLLKWAKIEAEW 390

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
             AP+ E I  +D  R+L DPL+ D ++ +E ++   L+ +   ++IA   LR++RA L 
Sbjct: 391 TQAPTPEDILAKDEARLLADPLWTDPVEDEETRIAAGLMEQFTAQQIAVACLRLYRAKLT 450

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
           APEE+                   +       +F  S W SLSVG +Q+AE RWL+P+LC
Sbjct: 451 APEELNQPP--------------ARGAPSVAASFGPSRWISLSVGREQRAEPRWLLPLLC 496

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGGEKPDFRG 545
           R+  + +  IG I +Q   T VE++   V    D +  +  ++  I  + L G  P+   
Sbjct: 497 RAGNLEKSQIGKITMQAQETHVELAEAAVQGFLDQIGPSGVVEGEITARLLDGV-PEMTR 555

Query: 546 YKSSGFKSKNSQDGATKRFKRFKGASK 572
                 + ++ +  A K FK  K   K
Sbjct: 556 GPQGKPRPRSDRP-AAKPFKPAKPRHK 581


>gi|237807374|ref|YP_002891814.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499635|gb|ACQ92228.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 642

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 162/616 (26%), Positives = 284/616 (46%), Gaps = 51/616 (8%)

Query: 1   MKIFENIP--------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           M   E +P          I +A++  GY + + +Q A + P L  +D+L  AQTG+GKT 
Sbjct: 1   MTDTEKLPSFSELGLAAPILKAVAAVGYEDPSPIQAAAIPPLLEGRDLLGQAQTGTGKTG 60

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGG 111
           AF L + S L               L +APTRELA+QV    +           +   GG
Sbjct: 61  AFALPILSRLNLTQMD------TQVLILAPTRELAIQVAEACQSYAQFIPDFHVLPIYGG 114

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S   + R L+ GA +VVGTPGR+ D +R   L++S LK +VLDEADEML +GF DD+E+
Sbjct: 115 SSYDSQLRALRRGAQVVVGTPGRVMDMMRRGKLDLSALKTLVLDEADEMLRMGFIDDVEW 174

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +++  P  R++ +FSAT+   I  +A  + K  V + IAS+    ++I  R  LV+   +
Sbjct: 175 VIEQCPLDRQIALFSATMPEQIRRIAHRHLKTPVEIKIASKTSTAANIRQRYWLVSGLHK 234

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  +L        +VF  T+ +    T  L+       AL G++ Q+ R   ++ ++
Sbjct: 235 LDAMTRMLEVEQYDALLVFVRTKTAAEELTSKLSARGHSCEALHGDIPQKLRERTVEKLK 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + IATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +   
Sbjct: 295 AGQIDILIATDVAARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVAPR 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLL 408
            +R    + +     +     P+ + I +   +R    +++ L  +      +++++  L
Sbjct: 355 ERRMLRMIEQATRQPIEPMQMPTAKDINKHRLERFKLQIRETLDSEEDLQPFQQIINEFL 414

Query: 409 AKH--DPEKIAAGFLRIHRAG---LCAPEEITPVSLVSGR-------------------- 443
                DP  + A   ++ +          E  P   +  R                    
Sbjct: 415 EDESTDPLDLCAALAKMVQGDEPLFMNENEPEPSQRMEERGGDRFDRDRGARRDRNDRGG 474

Query: 444 DRFRDDSRAFKVGGGSRDNFKG-SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAI 502
           DRF       +         +G ++ + L VG +   +   ++  +   +GI+ + IG I
Sbjct: 475 DRFERGGDRPERSERRSRAPEGPTARYKLHVGHEHGVKPGQIVGAIANEAGIDSKFIGHI 534

Query: 503 RVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD--FRGYKSSGFKSKNS 556
            +  D T V++      + ++ L++     + + ++   GE P+   R   S G +    
Sbjct: 535 EIYNDFTTVDLPEGMPTEVMNTLKKARVCQRPLDIELFSGEVPESARRARPSFGDRRPPR 594

Query: 557 QDGA-TKRFKRFKGAS 571
            DGA T+    F+G  
Sbjct: 595 ADGARTEGRGEFRGDR 610


>gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 635

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 166/611 (27%), Positives = 277/611 (45%), Gaps = 57/611 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 67  -KVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + +  V V I S       I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAA
Sbjct: 246 GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  K     L    + D + +AA  L+
Sbjct: 366 RISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------- 467
             +      E    +  +  R R   + R+ +   GS  N +G                 
Sbjct: 426 QVQQ-----ERPLQLPAIQERVRDERNERSERSDRGSDRNDRGGERGERRSREPRPMPAS 480

Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + VG +       ++  +   + I+ + IGAI++   +T V
Sbjct: 481 LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV 540

Query: 512 EV----SADGVDLLRRTVKLDKGIQLKYLGGE------KPDFRGYKSSGFKSKNSQDGAT 561
           ++      D +  LR+     K + ++  G +      +       +   K +  +    
Sbjct: 541 DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD 600

Query: 562 KRFKRFKGASK 572
           ++ +      K
Sbjct: 601 RKPRAASTGDK 611


>gi|21243540|ref|NP_643122.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109105|gb|AAM37658.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 632

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 283/629 (44%), Gaps = 67/629 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQ 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 421

Query: 415 -KIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDS-------------- 450
             IAA   ++ +               EE  P       DR                   
Sbjct: 422 IDIAAALAKLLQGDAPFLLTPPVRGVREESAPRQRNERADRGERPRFEPTFERGPRADGE 481

Query: 451 -------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                        R  +      +   G   + + VG     +   ++  +   +G+  +
Sbjct: 482 RAARPPRGDDTGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLESR 541

Query: 498 SIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF-RG 545
            IG I +Q D + +++ AD     +  L++     + + ++ L          KP F RG
Sbjct: 542 YIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPRG 601

Query: 546 YKSSGFK--SKNSQDGATKRFKRFKGASK 572
            K SG         D A    ++     +
Sbjct: 602 GKPSGRPNGPGRPMDRAGAPHRKGPPKPR 630


>gi|108800931|ref|YP_641128.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119870071|ref|YP_940023.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|126436556|ref|YP_001072247.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|108771350|gb|ABG10072.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. MCS]
 gi|119696160|gb|ABL93233.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. KMS]
 gi|126236356|gb|ABN99756.1| ATP-dependent RNA helicase CsdA [Mycobacterium sp. JLS]
          Length = 557

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 161/554 (29%), Positives = 266/554 (48%), Gaps = 20/554 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  A+++ GY   +++Q A +   L   DV+  AQTG+GKT AF + + 
Sbjct: 13  TTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S +         + A  AL +APTRELA+QV        A   V V    GG S   +  
Sbjct: 73  SKIDPN------SRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSSYGPQMA 126

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ 
Sbjct: 127 GLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERILSDTPEY 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ P I  + K Y  D V V + S+ +   +I  R + V+   + +A+  +L
Sbjct: 187 KQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMDALTRLL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +
Sbjct: 247 ETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDGSIDILV 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  +PE+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 307 ATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLNSI 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP-EK 415
            R     +V    PSVE +  +  ++    + + L    I    + + D     + P   
Sbjct: 367 ERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERDNNVPLAD 426

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      R+R   D    +       +    + + ++VG 
Sbjct: 427 IAAALAVQSRNGEEFLMTEPP--PEKRRERPVRDESGPRKARDRTRS--DLATYRIAVGK 482

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGI 531
           + K     ++  +    G+NR   G I ++P+ + VE+ AD     +  L RT      I
Sbjct: 483 RHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKDTLKKLERTRIQGVLI 542

Query: 532 QLKYLGGEKPDFRG 545
            L+   G K  ++G
Sbjct: 543 NLEPDRGPKARYKG 556


>gi|134299771|ref|YP_001113267.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052471|gb|ABO50442.1| ATP-dependent RNA helicase DbpA [Desulfotomaculum reducens MI-1]
          Length = 532

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 160/522 (30%), Positives = 257/522 (49%), Gaps = 26/522 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F N+   + I + L E G+   T +Q+  +   L   D++  AQTG+GKT AF + + 
Sbjct: 8   KLFGNLELDRRIVDGLKEMGFEEPTPIQQLAVPQVLAGYDMIGQAQTGTGKTAAFSIPMI 67

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L               + I PTRELA+QV  E+  +   + + V    GG S+ R+ R
Sbjct: 68  ERLNPRKREV------QTIIITPTRELAIQVAEEISKIGRFSRIKVLPIYGGQSIERQIR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL DH+R + L +  +  V+LDEADEMLD+GF +DIE I+  +P +
Sbjct: 122 SLRLGVQVVVGTPGRLLDHLRRQTLKVDQVDMVILDEADEMLDMGFIEDIEEIIRHTPAE 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  LA+ Y  D   V ++  N     I+         ++  A+  IL
Sbjct: 182 RQTLLFSATMPQEIIRLAQQYMTDPKYVTVSKTNLTVPQIEQVFYEAPEKNKLEALCRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC T+  V      L    F   AL G+LSQQ+R+  ++  R     + +
Sbjct: 242 DISDISQGILFCRTKRGVDELVAGLQARGFAAAALHGDLSQQQRNTVMRQFRSSEVELLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR G+++ +I     R+  ++
Sbjct: 302 ATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIISPREYRQLRQI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +  +  PS+  + ER  + I +    +  +   G  + +VD L+ ++DP  IA
Sbjct: 362 ENITKTHIKRQKLPSIADVVERQKESIKERLIQIINEGKLGYYRSVVDALVDEYDPMDIA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L++        E++                    V  G+     G     L++G K 
Sbjct: 422 AAALKLSMDLEPNSEDVN----------------LNTVNFGNTGARPGMVRLFLTLGRKD 465

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
           +     ++ ++   SGI+   IG I +  + +FVEV  D  +
Sbjct: 466 RVTPPEIIKLVSDESGISGGQIGNINIYENFSFVEVPEDWAN 507


>gi|163853846|ref|YP_001641889.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163665451|gb|ABY32818.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 568

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 363/561 (64%), Gaps = 9/561 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+    E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAV-PERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +    ++++      + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R++R+ +  PEE++  +  + R    D      VG     + + ++WF L++G + +A
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSRRP--DSRSGVPVGASRVGDDEPAAWFRLNLGRRDRA 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--SADGVDLLRRTVKLDKGIQLKYLG 537
           E R L+PML R   I R  IG+IR+  + T  EV  SA          +    ++++ + 
Sbjct: 480 EPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQ 539

Query: 538 GEKPDFRGYKSSGFKSKNSQD 558
           G+ P       S    ++ ++
Sbjct: 540 GDGPAAAKAPKSPRAQRHRRE 560


>gi|240141300|ref|YP_002965780.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
 gi|240011277|gb|ACS42503.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens AM1]
          Length = 568

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 364/561 (64%), Gaps = 9/561 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+    E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAV-PERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDETLPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +    ++++      + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R++R+ +  PEE++  +  + R    D   +  VG     + + ++WF L++G + +A
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSRRP--DSRSSVPVGASRVGDDEPAAWFRLNLGRRDRA 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--SADGVDLLRRTVKLDKGIQLKYLG 537
           E R L+PML R   I R  IG+IR+  + T  EV  SA          +    ++++ + 
Sbjct: 480 EPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQ 539

Query: 538 GEKPDFRGYKSSGFKSKNSQD 558
           G+ P       S    ++ ++
Sbjct: 540 GDGPAAAKAPKSPRAQRHRRE 560


>gi|326389016|ref|ZP_08210598.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206616|gb|EGD57451.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 601

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 255/557 (45%), Positives = 356/557 (63%), Gaps = 21/557 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P +I +AL+E+GY   T VQ A+L  +  ++D+LVSAQTGSGKTVAFG+A+A+ LL
Sbjct: 17  FSSLPNLISQALAEQGYAEPTPVQAAVLGAEAHDRDLLVSAQTGSGKTVAFGVAMAARLL 76

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +E++ F+   AP AL IAPTRELA+QV REL WL+ K G+ +  C+GG+   RERR L  
Sbjct: 77  SEDNGFN--RAPGALVIAPTRELALQVSRELTWLFGKAGIRITTCVGGMDAARERRTLAQ 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H+VVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E IL+++P+ RR L
Sbjct: 135 GTHVVVGTPGRLRDHLERGALDLSALHHVVLDEADEMLDMGFREDLEEILEATPEGRRTL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  LA+ YQ+DA+R++  S+N  H DI Y+AV V+ +D +NA++N+LR+H 
Sbjct: 195 LFSATMPKPIVALARRYQRDALRISTVSDNVGHGDITYQAVAVSPADIENAVINLLRFHE 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A+ AI+FC+TR +V      L E  F  VALSGE SQ ER+NALQ +RDGRAR+C+ATDV
Sbjct: 255 AETAILFCATRDNVRHLHSSLIERGFAAVALSGEHSQNERNNALQALRDGRARICVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L LVIH E+  + E L HRSGRTGRAGRKG++V ++P   +RR E + R A
Sbjct: 315 AARGIDIPSLSLVIHVEVPRDAEVLQHRSGRTGRAGRKGVAVMIVPYPRRRRVEGMLRIA 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V+  W P PS E+IRERD +R+L D L        ++ + + +LA   P  +A   ++ 
Sbjct: 375 RVTAEWVPVPSPESIRERDRERLLADLLQPIESSDADRDLAERILAAMSPTDVALALVQA 434

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G+  PEE+   S      R           G  R+ F    WF + +G +Q A+ RW
Sbjct: 435 RKRGIPDPEELIEQSQADAPVR-----------GARREGFDDVVWFRMDIGRRQNADPRW 483

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--------DKGIQLKY 535
           L+P+LCR   I R  IGAIR+  + T+ +V +      R  +K         + GI ++ 
Sbjct: 484 LLPLLCRRGHITRNEIGAIRIAANETYFQVPSAIEAKFRAALKRTANPGSDDESGITIEP 543

Query: 536 LGGEKPDFRGYKSSGFK 552
                 D    +  G +
Sbjct: 544 SPEAPQDTGRDRPRGAR 560


>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
 gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
          Length = 579

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 163/574 (28%), Positives = 269/574 (46%), Gaps = 25/574 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++    V+ + L   GY   T +Q   +   L   DVL  AQTG+GKT AF L L S
Sbjct: 6   TFADLGLAPVLLKTLDSLGYETPTPIQSQAIVQLLDGNDVLGLAQTGTGKTAAFSLPLLS 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +    ++      P AL + PTRELA+QV    +           +   GG  +  + R
Sbjct: 66  RIDTTKNK------PQALVLCPTRELAIQVAEAFQTYARGVDNFHVLPIYGGADMRNQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    ++VGTPGR+ DH+R   L++S LK +VLDEADEML +GF +DI++IL+ +PK 
Sbjct: 120 ALKQNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEMLRMGFIEDIDWILEHTPKD 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++  +FSAT+   I  +   YQKD V++ I + + +   I+         D+ + +  IL
Sbjct: 180 KQTALFSATMPHQIKRITDQYQKDPVKIEIKASHSELQQIEQLVWRARGLDKLDGLTRIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  TR      ++ LA   +   ALSGE++Q++R + L  M+ G+  + I
Sbjct: 240 EIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEVAQKQREDILSAMKKGKLDIII 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ ++  +     HR GRTGRAGR G ++       QR    +
Sbjct: 300 ATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAILFCKPREQRIIRDI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA------KHDP 413
            R     ++  P PS E + E  A         ++ I+ D+      ++       +H  
Sbjct: 360 ERATKSELIDYPMPSAEKLGEHRAAAF--KSTVVEHIEADKLDYFKAMITSWVDEGEHSL 417

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA    + +     P ++        R    D     +     RD    +  + L V
Sbjct: 418 LDIAASMALMAQED--KPLQLPKDPEPRPRRDREDRPTRGESRNRRRDLDYAAITYRLDV 475

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDK 529
           G + +AE   ++  +    GI  + I  I ++ + T V++      +  + L++T    +
Sbjct: 476 GRRDRAEPGSIVGAIANEGGIEGKFINNIDIKENFTLVDLPDGMPTEIFEQLKKTRVKGR 535

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            + L+    E P  +  K  G +  + +DG  ++
Sbjct: 536 PLNLRVWKDEAP--KDGKDRGNRRPSRRDGGDRK 567


>gi|218532791|ref|YP_002423607.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218525094|gb|ACK85679.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 568

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 364/561 (64%), Gaps = 9/561 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+    E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAV-PERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  SEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +    ++++      + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R++R+ +  PEE++  +  + R    D      VG     + + ++WF L++G + +A
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSRRP--DSRSGVPVGASRVGDDEPAAWFRLNLGRRDRA 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--SADGVDLLRRTVKLDKGIQLKYLG 537
           E R L+PML R   I R  IG+IR+  + T  EV  SA          +    ++++ + 
Sbjct: 480 EPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQ 539

Query: 538 GEKPDFRGYKSSGFKSKNSQD 558
           G+ P       S    ++ ++
Sbjct: 540 GDGPAAAKAPKSPRAQRHRRE 560


>gi|145222813|ref|YP_001133491.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145215299|gb|ABP44703.1| ATP-dependent RNA helicase CsdA [Mycobacterium gilvum PYR-GCK]
          Length = 559

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 159/555 (28%), Positives = 263/555 (47%), Gaps = 21/555 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+++ GY + + +Q A +   L   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  ++          AL +APTRELA+QV        A+  V V    GG S   +   
Sbjct: 74  KIDTDSRN------TQALVLAPTRELALQVAEAFGRYGAQLRVNVLPIYGGSSYVPQLAG 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +
Sbjct: 128 LKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYK 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L 
Sbjct: 188 QVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +A
Sbjct: 248 TEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTIDILVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  +PE+ +HR GRTGRAGR G ++  +    +     + 
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEKI 416
           R     +V    PSV+ + E+   +            G +  + +V+     HD     I
Sbjct: 368 RVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDHDVPMADI 427

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA      R G        P        R     R        R+     + + ++VG +
Sbjct: 428 AAALALQSRNGEEFLMTEPPP-----EKRRERPERGDASPRKPRERRSDLATYRIAVGKR 482

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQ 532
            K     ++  +    G++R   G I ++ D + VE+ A      +  L+ T    + IQ
Sbjct: 483 HKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGKTLKALQNTKIQGQLIQ 542

Query: 533 LKYLGGEKPDFRGYK 547
           L+   G KP      
Sbjct: 543 LQPDRGAKPHRGKPP 557


>gi|254563809|ref|YP_003070904.1| ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
 gi|254271087|emb|CAX27094.1| putative ATP-independent RNA helicase, DEAD/DEAH-box family protein
           [Methylobacterium extorquens DM4]
          Length = 568

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 266/561 (47%), Positives = 363/561 (64%), Gaps = 9/561 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+    E+D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAV-PERDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E++   P  APLAL IAPTRELA+QV REL WLYA+TG  +  C+GG+   RE R L+ 
Sbjct: 62  GEDEALPPPGAPLALVIAPTRELALQVQRELTWLYAQTGARIVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AV+LDEADEMLD+GFR+D+EFIL S+PK RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVILDEADEMLDMGFREDLEFILASTPKDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VNILRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREVEHAVVNILRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPAKRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +    ++++      + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRILDRERMMSDPLLAEPETEEDREWEREWAEALMERCPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R++R+ +  PEE++  +  + R    D      VG     + + ++WF L++G + +A
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSRRP--DSRSGVPVGASRVGDDEPAAWFRLNLGRRDRA 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--SADGVDLLRRTVKLDKGIQLKYLG 537
           E R L+PML R   I R  IG+IR+  + T  EV  SA          +    ++++ + 
Sbjct: 480 EPRRLLPMLTRRGQIGRGDIGSIRIFDNETTFEVRASAADDFAASFARRGPADVRVERMQ 539

Query: 538 GEKPDFRGYKSSGFKSKNSQD 558
           G+ P       S    ++ ++
Sbjct: 540 GDGPAAAKAPKSPRAQRHRRE 560


>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 594

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 161/586 (27%), Positives = 272/586 (46%), Gaps = 28/586 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+ + G+   + +Q   +   L  KD +  AQTG+GKT AFGL +   +    
Sbjct: 10  LSQELLKAVEDLGFEEPSPIQVLAIPALLTGKDAVGQAQTGTGKTAAFGLPILEKI---- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +   +  AL + PTRELA+QV  EL  L      V  +   GG  + R+ R L  GA
Sbjct: 66  ---ASGKSVQALVLCPTRELAIQVSEELSKLAVHKRGVSVLPIYGGQPIERQLRALAKGA 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++   L ++  + VVLDEADEMLD+GFR+DIE IL+ SP   + ++F
Sbjct: 123 QVVVGTPGRVIDHLQRGTLRLNEARIVVLDEADEMLDMGFREDIELILEQSPADCQRVLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K + ++   + IA +      I+     V    + +A+  +L   G +
Sbjct: 183 SATMPQPIRELSKRFLREPEMLTIAHKMLTVPAIEQVYYEVRPYQKMDALCRVLDSQGFR 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VFC+T+ SV   T  L +  +Q   L G+++Q +R   +   R     + +ATDVAA
Sbjct: 243 KALVFCATKRSVDEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D++ VI+ ++  + E  +HR GRTGRAGR+G +   +    Q +   + R    
Sbjct: 303 RGIDVDDVDAVINYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVREQYKIREIIRYTKA 362

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE------KIA 417
            +     P++  +      ++L +      +S     + +V+    +H P+       I+
Sbjct: 363 RIQPGQLPTLRDVSNIRTSKLLDEVRQTLAESSLDRWRVLVEDFQTEHFPDGDASSRDIS 422

Query: 418 AGFLRIHRAGLCAPE------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           A  L++        +      +   ++           S+        R      S   +
Sbjct: 423 AALLKLLMQRDFGNQDNVGEVDELTMAPQRPAKNAEAKSKGRMQPLSRRQESGPMSRLHI 482

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--- 528
            VG       R L+  +   SGI  +S+GAI +Q + + VE+SA+    +  T+      
Sbjct: 483 DVGQAHDVTPRALVGAITGESGIPGRSVGAIDIQDNFSIVEISAELAAHVLATLNKGVFI 542

Query: 529 KGIQLKYLGG---EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            G+++        + P  R   + G + +       K      G  
Sbjct: 543 SGVKVSAKAADETDSPHPRKPFAPGQRRQRPGKFGKKPRGATLGRK 588


>gi|83951704|ref|ZP_00960436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
 gi|83836710|gb|EAP76007.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Roseovarius nubinhibens ISM]
          Length = 786

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 287/581 (49%), Positives = 384/581 (66%), Gaps = 28/581 (4%)

Query: 5   ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +P    +  AL+ RGY +LT VQEA+ +PDL   D+LVSAQTGSGKTVAFGLA+A TL
Sbjct: 21  DTLPMIPPLSNALAARGYDSLTPVQEAMADPDLIGSDLLVSAQTGSGKTVAFGLAMAPTL 80

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L E + F PA+APLAL +APTRELA QV  EL WLYA+TG  +A C+GG+ +  ERR L+
Sbjct: 81  LDEAEVFGPAAAPLALVVAPTRELAFQVMNELRWLYAETGARIASCVGGMDMRDERRTLE 140

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGRL DHI    L++  L+ VVLDEADEMLDLGFR+D+EF+L+++P+ RR 
Sbjct: 141 RGAHIVVGTPGRLRDHISRGSLDMDDLRVVVLDEADEMLDLGFREDLEFMLEAAPENRRT 200

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+ PAI  LA  +Q+DA R+N  S   QH+DI Y+A+ VA  + + AI N+LR+H
Sbjct: 201 LLFSATVPPAIARLAGQFQRDARRINTVSSTEQHADIAYQALRVAHGEGEAAIFNLLRFH 260

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AIVF +TRA+V+  T  LA   F VV+LSGELSQ ERS+ALQ MRDGRAR+C+ATD
Sbjct: 261 DAEAAIVFANTRAAVNHLTTRLANRGFAVVSLSGELSQSERSHALQAMRDGRARICVATD 320

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP+L LVIHA+L  N E+L+HRSGRTGRAGRKG+S  ++     ++AER+ + 
Sbjct: 321 VAARGIDLPNLNLVIHADLPKNTESLMHRSGRTGRAGRKGVSALIVAPRDLKKAERILKF 380

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A ++  W   PS +AI E+D  R+L DP +   +   E      LLA+  PE +   +LR
Sbjct: 381 AKITAEWTLPPSADAILEQDENRLLADPAWETPLTEAETAFAARLLAEQSPEAVVGAYLR 440

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + R    APEE++  +  +G+   R D             F  ++W SLSVG K +AEAR
Sbjct: 441 LFRTRHAAPEELS--APEAGKAAPRRD----------HAEFGPATWISLSVGRKDRAEAR 488

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV---KLDKGIQLKYLGGE 539
           WL+P+L RS  +++ +IGAIRVQ   T+VE+S   V      +    L+ GI ++ L  E
Sbjct: 489 WLLPLLLRSGNLDKANIGAIRVQDGETYVELSTPAVSGFFDALDNNTLEDGITVRQL-DE 547

Query: 540 KPDF--------RGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            PD         RG + +G K ++  DG  +  K +    +
Sbjct: 548 MPDLGRPAPKPHRGARPAGGKPRH--DGPPRGEKSWGDKPR 586


>gi|184200206|ref|YP_001854413.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
 gi|183580436|dbj|BAG28907.1| ATP-dependent DEAD-box RNA helicase DeaD [Kocuria rhizophila
           DC2201]
          Length = 719

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 157/562 (27%), Positives = 269/562 (47%), Gaps = 17/562 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL E GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   
Sbjct: 87  VLAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAELSDLHG 146

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
           P  +   L +APTRELA+QV                +   GG S   +   L+ GA +VV
Sbjct: 147 PQRSTRVLVLAPTRELALQVAEAFGSYATHLEDFTVLPVYGGSSYGPQLAGLKRGAQVVV 206

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L +  +  VVLDEADEML +GF +D+E IL  +P ++++ +FSAT+
Sbjct: 207 GTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPVEKQVALFSATM 266

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             AI  +A+ Y +D   + + ++    ++   R + V    + +A+  +L        IV
Sbjct: 267 PKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIV 326

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+A+       L    +   A++G++ Q  R   +  +R+G+  + +ATDVAARG+D
Sbjct: 327 FVRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLREGKIDILVATDVAARGLD 386

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGRKG ++  +    +     + +     V  
Sbjct: 387 VERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQ 446

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPE--KIAAGFLRI 423
              P+ + + +       Q     ++I+ ++    +++V+   ++HD +  +IAA    I
Sbjct: 447 MRVPTTDEVNQTRKDNFAQQ--IEETIESEDLGLFRELVERYESEHDVDAVEIAAALAVI 504

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            + G     E  P      RDR R D    +    S  +  G   + L+VG + +     
Sbjct: 505 AQNGRPFLVEDLPEMPQRKRDRERRDGDGPR-NRRSPGDEAGMKTYKLAVGHRDRVVPGA 563

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQL---KYL 536
           ++  L    G+N   IGAI ++P  T V     + A  +D L  T      I++   +  
Sbjct: 564 VVGALTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAGTLDKLSNTQINGAPIRIQEDRGP 623

Query: 537 GGEKPDFRGYKSSGFKSKNSQD 558
           GG +         G + +  ++
Sbjct: 624 GGARSGGGNRFRGGDRDRGPRN 645


>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 640

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 167/606 (27%), Positives = 275/606 (45%), Gaps = 51/606 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 67  -KVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P +R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSERQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + +  V V I S       I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAA
Sbjct: 246 GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  K     L    + D + +AA  L+
Sbjct: 366 RISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------- 467
             +      E    +  +  R R   + R+ +   GS  N +G                 
Sbjct: 426 QVQQ-----ERPLQLPAIQERVRDERNERSERSDRGSDRNDRGGERGERRSREPRPMPAS 480

Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + VG +       ++  +   + I+ + IGAI++   +T V
Sbjct: 481 LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV 540

Query: 512 EV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
           ++      D +  LR+     K + ++  G +     G  +   +    +     R    
Sbjct: 541 DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD 600

Query: 568 KGASKN 573
           + A   
Sbjct: 601 RPAGDR 606


>gi|56478694|ref|YP_160283.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
 gi|56314737|emb|CAI09382.1| ATP-dependent RNA helicase DeaD [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 271/585 (46%), Gaps = 28/585 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +ALSE GY   + +Q   +   L   D+L  AQTG+GKT AF L L   L   
Sbjct: 50  DLRAPLLDALSEIGYETPSPIQAICIPHLLAGHDLLGEAQTGTGKTAAFALPLLDRLDLA 109

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P  L +APTRELA+QV    +           +   GG S+  + R L  G
Sbjct: 110 ------VKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLRQLARG 163

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ DHI  K LN+  L  +VLDEADEML +GF DD+E+IL  +P +R+  +
Sbjct: 164 AHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAERQTAL 223

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHG 243
           FSAT+  AI  +A  Y ++   V I +     S    R   ++++ + +A+  I      
Sbjct: 224 FSATMPDAIRRVAHRYLREPREVKIKASTTTVSTTRQRYCQISVAHKLDALTRILEVEED 283

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F  T+ +       L    +   AL+G+++QQ R   ++ ++ G+  + +ATDV
Sbjct: 284 FDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIVVATDV 343

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G ++  +     R  + + R  
Sbjct: 344 AARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREMRMLKVIERAT 403

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPE--KIAAG 419
              +     PS EA+ ++      Q    +   +     + +V  + + H+ E   IAA 
Sbjct: 404 RQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELHDIAAA 463

Query: 420 --FLRIHRAGLCAPEEITP-------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
             FL      L  PE   P            G +R   ++R   +      +      + 
Sbjct: 464 LAFLAQRERPLQLPESKGPDIARLPEPRREPGAERAPRENRDKILERRREFSEGNLQRYR 523

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + VG  Q+A  + ++  +   +GI  + IG I +  D + VE+ +    D +D+LRR   
Sbjct: 524 IEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSALPHDVLDILRRVRV 583

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
               + ++ L  E+      +      +    GA  R     G+ 
Sbjct: 584 RQHQLNIRPLDAEEAKRDAARVRPGAPRP---GAAPRHAAHPGSK 625


>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304411613|ref|ZP_07393226.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307306611|ref|ZP_07586353.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304350140|gb|EFM14545.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910579|gb|EFN41008.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 640

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 166/606 (27%), Positives = 274/606 (45%), Gaps = 51/606 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 67  -KVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + ++ V V I S       I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAA
Sbjct: 246 GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  K     L    + D + +AA  L+
Sbjct: 366 RISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------- 467
             +      E    +  +  R R     RA +   GS    +G                 
Sbjct: 426 QVQQ-----ERPLQLPAIQERARDERSERAERSDRGSDRGDRGGERGERRSREPRPMPAS 480

Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + VG +       ++  +   + I+ + IGAI++   +T V
Sbjct: 481 LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV 540

Query: 512 EV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
           ++      D +  LR+     K + ++  G +     G  +   +    +     R    
Sbjct: 541 DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD 600

Query: 568 KGASKN 573
           + A   
Sbjct: 601 RPAGDR 606


>gi|127511465|ref|YP_001092662.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636760|gb|ABO22403.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 599

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 165/602 (27%), Positives = 273/602 (45%), Gaps = 41/602 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +          + P  L +APTRELAVQV             +  +   GG S+H++ 
Sbjct: 66  NAIDPNR------NVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  IVVGTPGR+ DH+R   L +  L A+VLDEADEML +GF DDIE+IL+ +P+
Sbjct: 120 NALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R++ +FSAT+   I  +A  Y +  V ++IA+ +     I+ R V V+  ++  A+V +
Sbjct: 180 ERQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + 
Sbjct: 240 LEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA------KHD 412
           + R     +     PS E + ER   R+ +     ++I  +    +   +A      + D
Sbjct: 360 IERATKSRISPMNVPSPETVAERRLSRLGEQ--VSNTIDNESLDFMHGAVAQLCQQLEVD 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG------- 465
            E +AA  L + +                 RD      R  +     R   +        
Sbjct: 418 TEVLAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDRSDRAPRGRRESRPTPANL 477

Query: 466 -------------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                           + L VG         ++  +   + I+ + IG I++   +T ++
Sbjct: 478 GQADTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSID 537

Query: 513 VSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
           +      D +  L++     K + ++  G E  +      +  + K   +  + R     
Sbjct: 538 LPEGMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERKSHRKGNRD 597

Query: 569 GA 570
             
Sbjct: 598 NG 599


>gi|323691087|ref|ZP_08105368.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
 gi|323504856|gb|EGB20637.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           symbiosum WAL-14673]
          Length = 552

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 162/553 (29%), Positives = 279/553 (50%), Gaps = 20/553 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   I  A+++ G+   + +Q   +  +L   D++  AQTG+GKT AFG+ L   
Sbjct: 6   FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  ++ +        A+ + PTRELA+QV  E+  L      V  +   GG  + R+ R 
Sbjct: 66  VDPKSKK------LQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++GTPGR+ DH+R K L + H+  VVLDEADEML++GF +D+E IL   P++R
Sbjct: 120 LKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + +MFSAT+ PAI  +AK +QKD   V +  +      +      V    +   +  +L 
Sbjct: 180 QTVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + IA
Sbjct: 240 MYDPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKI 416
           R     ++ +P PS+  +     ++I+     +      +K        VL   +    +
Sbjct: 360 RYCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKIINIVEKRVLEEDYTTLDL 419

Query: 417 AAGFLRIHRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFS 470
           AA  L++           E TP+  +   + +   +R+   G G+R   +G     +   
Sbjct: 420 AAALLKMSMGDDYEDISVERTPLRSLDELEDYERGARSRNNGRGARSGSRGGSENVARLF 479

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + +K  K 
Sbjct: 480 INIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMKDVK- 538

Query: 531 IQLKYLGGEKPDF 543
           I+ K +  EK + 
Sbjct: 539 IKGKNVHMEKANR 551


>gi|158424747|ref|YP_001526039.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
 gi|158331636|dbj|BAF89121.1| putative DEAD-box protein [Azorhizobium caulinodans ORS 571]
          Length = 678

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 261/576 (45%), Positives = 360/576 (62%), Gaps = 32/576 (5%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y + T VQ A+  P+   +D+LVSAQTGSGKTVA+GLA+  TLL  ++R     APLAL 
Sbjct: 109 YTDPTPVQSAVTAPEATGRDMLVSAQTGSGKTVAYGLAVGQTLLGSDERLPAPGAPLALV 168

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           IAPTRELA+QV +EL WLYA+ G  +  C+GG+   RE+R LQ+GAH+VVGTPGRL DH+
Sbjct: 169 IAPTRELALQVHKELAWLYAEAGGRIVACVGGMDPLREKRQLQDGAHVVVGTPGRLRDHL 228

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
               L++S L AVVLDEADEMLDLGFR+D+EFILDS+P KR+ L+FSAT+   I  LA+ 
Sbjct: 229 ERGRLDMSQLAAVVLDEADEMLDLGFREDLEFILDSTPGKRQTLLFSATMPRDIAALARQ 288

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           YQ DA+R+ +A +   H+DI+YRAV V+  + ++A+VN+LR+  A  AIVFC+TR +V  
Sbjct: 289 YQHDALRIEVAGQKVGHADIEYRAVRVSPREIEHAVVNLLRFFEAPGAIVFCNTREAVRH 348

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            T  L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDVAARGIDLP L LVIHA
Sbjct: 349 LTATLQERGFSAVALSGELGQNERNLALQALRDGRARVCVATDVAARGIDLPGLGLVIHA 408

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           EL  + E+L HRSGRTGRAGRKG+SV ++P   +R+A++L  EA V   W   P+ E +R
Sbjct: 409 ELPHDAESLQHRSGRTGRAGRKGVSVLLVPPGRRRKADQLLAEARVVPAWSGPPTAEEVR 468

Query: 380 ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSL 439
             D +R+L DP   +    ++  + + LLA++  +++A   +R++RA L APEE+T    
Sbjct: 469 ALDQERMLSDPQLSELPAAEDANLAEALLAQYSAQELATALVRLYRARLPAPEEVTD--- 525

Query: 440 VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499
             G  R + D RA     G+        WF L+VG ++ A+ +WL+P++CR  G+ +  I
Sbjct: 526 -PGEGRQKRDGRAGLGATGTGGA-----WFRLAVGRRKNADPKWLLPLICRRGGVTKGDI 579

Query: 500 GAIRVQPDLTFVEVSADGVDLLRRTVKLDK--GIQLKYLGGEKPDFRGYKS--------- 548
           GAIR+  + T  E++    D    + +        ++   G  P+ RG            
Sbjct: 580 GAIRIFENETLFEIAEPLADSFIHSARASAAGDYPIEPHDGSAPERRGPPRGHGPAAGRG 639

Query: 549 ------------SGFKSKNSQDGATKRFKRFKGASK 572
                       +G +S  +  G  K     +G  +
Sbjct: 640 AAGGKGKGYGNQAGVRSWGNGPGGQKASHGARGKVR 675


>gi|227542566|ref|ZP_03972615.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181764|gb|EEI62736.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 718

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 159/541 (29%), Positives = 269/541 (49%), Gaps = 15/541 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I EA+ + G+   + +Q   +   L  +DV+  AQTG+GKT AF L + + +   N
Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH++   L+ISHL  +VLDEADEML++GF++D+E IL+ +P K+++ +F
Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L++ Y  D   V + +E R +++I  R + VA  ++ +A+  IL     +
Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +ATDVAA
Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDP--EKIAAGFL 421
           ++     P+V+ + E   ++          DS  G  + +V      HD   E IAA   
Sbjct: 471 TLEEMQLPTVDEVNESRKEKFADSITEALEDSQLGLFRSLVKQYSDAHDVPLEDIAAALA 530

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
              ++      +  P      R     D    +   G          + L VG +     
Sbjct: 531 AQAQSNEEFLMKEPPKDKRRERRDRDRDGGRRQRDNGPARPDSDFEIYRLQVGRRDHVRP 590

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLG 537
             ++  +    G++ +  G I +Q   + VE+      D +D L  T    + I+++   
Sbjct: 591 GAIVGAIANEGGLSNRDFGRIDIQQSFSLVELPKGLGDDVLDRLADTEIGGRNIEIRRDP 650

Query: 538 G 538
            
Sbjct: 651 D 651


>gi|329113602|ref|ZP_08242382.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
 gi|326697124|gb|EGE48785.1| Cold-shock DEAD box protein A-like protein [Acetobacter pomorum
           DM001]
          Length = 584

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 263/567 (46%), Positives = 349/567 (61%), Gaps = 13/567 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T+VQ A+L  D + +D+LVSA+TGSGKTVAFGL LA  LL +  R  P+ AP+AL
Sbjct: 18  GFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLLNDAGRCVPSGAPIAL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QV  ELEWLYA+TG  +  C+GG+   +E R L +G HIVVGTPGRLCDH
Sbjct: 78  VIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALASGCHIVVGTPGRLCDH 137

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L+FSATI+  I  LA+
Sbjct: 138 LRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTLLFSATIARDIAALAR 197

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            YQ+DA+R++    N  H+DI YRAVL    D    +VN+LR   +  AIVFC TR +V 
Sbjct: 198 RYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLMESSAAIVFCHTREAVR 257

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +   +L E  F  VA+SG+L Q ERS A++ +R G+ARVC+ATDVAARGID+PDL LVIH
Sbjct: 258 QLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDVAARGIDIPDLGLVIH 317

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           A L SNP  LLHRSGRTGRAG+KG  V ++P   +R AERL + A V+  W  AP+  AI
Sbjct: 318 ASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAAKVTAEWSGAPTPAAI 377

Query: 379 RERDAQRILQDPLFLDSIQGDEKKM--VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
              DA+R+L  P        D +    +  L A+H PE++ A  + +    L AP  +  
Sbjct: 378 ATADAERLLAAPFLSAPAPEDAETQTLISRLAAEHTPEQLGAALVGLWHKSLPAPVSVRV 437

Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496
           ++  + R   R+      V    R       WF LSVG + +A+ +WL+PMLCR   I +
Sbjct: 438 LTPDARRAAPRERDPNRPVRERERAPAMDGKWFRLSVGREDRADPKWLVPMLCRLGNIKK 497

Query: 497 QSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL----------GGEKPDFRGY 546
           Q IG+IR+  D T VE+S D  +            ++             GG +P +   
Sbjct: 498 QDIGSIRITQDHTLVEISPDKAEQFASCASATDPDEITVEPAAAPRKGGGGGSRPAYADR 557

Query: 547 KSSGFKS-KNSQDGATKRFKRFKGASK 572
           K  G +S    ++GA+K     K   K
Sbjct: 558 KPKGGRSFAPRREGASKSNSSRKRKPK 584


>gi|227487924|ref|ZP_03918240.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092130|gb|EEI27442.1| superfamily II helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 718

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 159/541 (29%), Positives = 269/541 (49%), Gaps = 15/541 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I EA+ + G+   + +Q   +   L  +DV+  AQTG+GKT AF L + + +   N
Sbjct: 117 LPSDILEAVKKVGFETPSPIQARTIPALLDGRDVVGLAQTGTGKTAAFALPIIARIDKSN 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 177 ------RSPQALVLAPTRELALQVADAFQEFADHVGGINVLPIYGGQAYGIQLSGLRRGA 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH++   L+ISHL  +VLDEADEML++GF++D+E IL+ +P K+++ +F
Sbjct: 231 HIIVGTPGRVIDHLKKGSLDISHLDYLVLDEADEMLNMGFQEDVERILEDTPDKKQVALF 290

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L++ Y  D   V + +E R +++I  R + VA  ++ +A+  IL     +
Sbjct: 291 SATMPNAIRRLSQQYLDDPYEVTVKAETRTNTNISQRYLNVAHRNKLDALTRILEVTEFE 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +ATDVAA
Sbjct: 351 AMIIFVRTKYETEELAEKLRARGFSAQAINGDIAQQQRERTVDQLRDGRLDILVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 411 RGLDVDRISHVLNYDIPHDTESYIHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 470

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDP--EKIAAGFL 421
           ++     P+V+ + E   ++          DS  G  + +V      HD   E IAA   
Sbjct: 471 TLEEMQLPTVDEVNESRKEKFADSITEALEDSQLGLFRSLVKQYSDAHDVPLEDIAAALA 530

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
              ++      +  P      R     D    +   G          + L VG +     
Sbjct: 531 AQAQSNEEFLMKEPPKDKRRERRDRDRDGGRRQRDNGPARPDSDFEIYRLQVGRRDHVRP 590

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLG 537
             ++  +    G++ +  G I +Q   + VE+      D +D L  T    + I+++   
Sbjct: 591 GAIVGAIANEGGLSNRDFGRIDIQQSFSLVELPKGLGDDVLDRLADTEIGGRNIEIRRDP 650

Query: 538 G 538
            
Sbjct: 651 D 651


>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 640

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 166/606 (27%), Positives = 274/606 (45%), Gaps = 51/606 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 67  -KVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSERQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + ++ V V I S       I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAA
Sbjct: 246 GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERSTNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  K     L    + D + +AA  L+
Sbjct: 366 RISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLAAALLQ 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------- 467
             +      E    +  +  R R     R  +   GS  N +G                 
Sbjct: 426 QVQQ-----ERPLQLPAIQERVRDERSERTERSDRGSDRNDRGGERGERRSREPRPMPAS 480

Query: 468 ----------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + VG +       ++  +   + I+ + IGAI++   +T V
Sbjct: 481 LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV 540

Query: 512 EV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
           ++      D +  LR+     K + ++  G +     G  +   +    +     R    
Sbjct: 541 DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD 600

Query: 568 KGASKN 573
           + A   
Sbjct: 601 RPAGDR 606


>gi|294625117|ref|ZP_06703762.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600581|gb|EFF44673.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 648

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 284/629 (45%), Gaps = 67/629 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 26  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 86  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++
Sbjct: 140 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQ 199

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 200 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 260 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 320 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 379

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 380 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 437

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDS-------------- 450
             IAA   ++ +             A E+  P       DR                   
Sbjct: 438 IDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADGE 497

Query: 451 -------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                        R  +      +   G   + + VG     +   ++  +   +G+  +
Sbjct: 498 RAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLESR 557

Query: 498 SIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF-RG 545
            IG I +Q D + +++ AD     +  L++     + + ++ L          KP F RG
Sbjct: 558 YIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAAAPSKPRFPRG 617

Query: 546 YKSSGFK--SKNSQDGATKRFKRFKGASK 572
            K SG         D A    ++     +
Sbjct: 618 GKPSGRPNGPGRPMDRAGAPHRKGPPKPR 646


>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 528

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 157/560 (28%), Positives = 270/560 (48%), Gaps = 38/560 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  I   I +A+ + G+   + +QE ++   L+  DV+  AQTG+GKT AFG+ L
Sbjct: 1   MMKFEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    + +      +L + PTRELA+QV  EL+ L       +    GG S+  + 
Sbjct: 61  LE-------KVTSDRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +VVGTPGR+ DH+  K L +  +  ++LDEADEMLD+GF +DIE IL     
Sbjct: 114 KALKRGVQVVVGTPGRVLDHLNRKTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNT 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+ P I  L+  Y  +  +V I+        I+     V   ++ +++  +
Sbjct: 174 NRQTMLFSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRV 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  V+  T+ L    +    L G+L+Q +R   ++  RD      
Sbjct: 234 IDSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ ++  +PE+ +HR GRTGRAGR+G++V ++     +    
Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLAKHDPE 414
           +  E  +++  +  PSVE + E+         + L   + D+  + D     LL ++ P 
Sbjct: 354 IEAEIKMTIPSQRIPSVEEVVEKQQHVWKGQIIDLIESEEDDAGLYDDLVSDLLNQYPPN 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           KI A  L++                        +D        G     KG + F ++VG
Sbjct: 414 KIVASLLKLAFYS-------------------HEDLNDDGYDFGDTGAQKGMTRFFINVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
              +   + L   + +  GI  +S+G I +  + TF+EV  +    +       +G++  
Sbjct: 455 RNIELTPKKLAEEVSQLVGIPTKSVGRIDIFDNFTFMEVPQEVAPFVY------EGLKYS 508

Query: 535 YLGGEKPDFRGYKSSGFKSK 554
            + G + +    K    +++
Sbjct: 509 RVNGARINLEPAKPRPKRNR 528


>gi|323483414|ref|ZP_08088802.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
 gi|323403268|gb|EGA95578.1| hypothetical protein HMPREF9474_00551 [Clostridium symbiosum
           WAL-14163]
          Length = 552

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 162/553 (29%), Positives = 278/553 (50%), Gaps = 20/553 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   I  A+++ G+   + +Q   +  +L   D++  AQTG+GKT AFG+ L   
Sbjct: 6   FEDLNLDAKILRAVTDMGFEAASPIQGQSIPLELEGLDIIGQAQTGTGKTAAFGIPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  ++ +        A+ + PTRELA+QV  E+  L      V  +   GG  + R+ R 
Sbjct: 66  VDPKSKK------LQAIILCPTRELAIQVSEEIRRLAKYMHGVKVLPIYGGQEIGRQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++GTPGR+ DH+R K L + H+  VVLDEADEML++GF +D+E IL   P++R
Sbjct: 120 LKDGIQVIIGTPGRVMDHMRRKTLKLEHVHTVVLDEADEMLNMGFLEDMETILSELPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + +MFSAT+ PAI  +AK +QKD   V +  +      +      V    +   +  +L 
Sbjct: 180 QTVMFSATMPPAIAEIAKKFQKDPEIVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + IA
Sbjct: 240 MYDPKLSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLREIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKI 416
           R     ++ +P PS+  +     ++I+     +      +K        VL   +    +
Sbjct: 360 RYCKTKIIPQPIPSLNDVTSIKVEKIMDSVEEIIRDSDLDKIINIVEKRVLEEDYTTLDL 419

Query: 417 AAGFLRIHRAGLCAP--EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFS 470
           AA  L++           E TP+  +   + +   +R    G G+R   +G     +   
Sbjct: 420 AAALLKMSMGDDYEDISVERTPLRSLDELEDYERGARNRNNGRGARSGSRGGSENVARLF 479

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + +K  K 
Sbjct: 480 INIGKNQGIKPGDILGAIAGESGMPGRMVGSIDMFDKYTFVEVPREQADVVLQAMKDVK- 538

Query: 531 IQLKYLGGEKPDF 543
           I+ K +  EK + 
Sbjct: 539 IKGKNVHMEKANR 551


>gi|150403372|ref|YP_001330666.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C7]
 gi|150034402|gb|ABR66515.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C7]
          Length = 546

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 164/539 (30%), Positives = 279/539 (51%), Gaps = 16/539 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ F+N+     I +AL ++G+ N T +QE  +   +   +DV+  AQTG+GKT AFG+ 
Sbjct: 1   MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+         +    AL +APTRELA+QV  E++ +     + V    GG S+ R+
Sbjct: 61  ILETID------ESSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S  
Sbjct: 115 IRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   +  
Sbjct: 175 TEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        ++FC T+A V   +  L E  +    L G+++Q +R   L   +  +  V
Sbjct: 235 IIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLDKFKARKINV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ +
Sbjct: 295 LVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + + AN  +  E  P V+ I     ++I+     L       D +KM   LL   DP++
Sbjct: 355 YIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKELLESGKYNDCEKMAAELLEDADPQE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNF----KGSSWFS 470
           + +  L+       +      +   + R+ R R + R+                G+    
Sbjct: 415 VLSAVLKYALKDELSESNYKRIGKPANREGRDRGEGRSEGRRDRGEGRRSFVSGGNVRLF 474

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +++G   K   + L+  + + S +  + I  ++V    +FV VS+D  +++  + K +K
Sbjct: 475 VALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEIILDSFKHEK 533


>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
 gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 537

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 163/523 (31%), Positives = 264/523 (50%), Gaps = 26/523 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +ALSE G+   + +Q+A +   +   D++  AQTG+GKT AFG+ +   +   
Sbjct: 20  SLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGLDLIGQAQTGTGKTAAFGIPICEKI--- 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +F    A  AL + PTRELAVQV  E+  +     +      GG S+ R+ R L+ G+
Sbjct: 77  NPKFQ---AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGS 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            +VVGTPGR+ DH+    L + ++K VVLDEADEMLD+GF DDIE IL   PK+ R +M 
Sbjct: 134 QVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVDDIETILKQVPKEERQVML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  LA+NY      V ++ +      I+          + +A+  I+     
Sbjct: 194 FSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLIEQVFYETRDKIKVDALCRIIDMEDI 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC T+  V      L    +   AL G+LSQQ+R   ++  RDG+  + +ATDVA
Sbjct: 254 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG ++ ++     R+   + R   
Sbjct: 314 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +V +  P++  + ER A+ +      +   S  G  + +V  LL ++D   +AA  L+
Sbjct: 374 TRIVRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALK 433

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
               G+    E                    ++  G+     G     +++G  Q+   +
Sbjct: 434 FAVEGVEERTEEE-----------------DELTFGNTGAAPGMVRLFMNIGRLQQVRPQ 476

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            ++  +   SGI    IG I +    TFVE+       +   +
Sbjct: 477 DIVRWIADESGIPGNIIGMINIYDKFTFVEIPEQHASRVLSCM 519


>gi|261856513|ref|YP_003263796.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836982|gb|ACX96749.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 594

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 158/590 (26%), Positives = 276/590 (46%), Gaps = 27/590 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F +  +   +  ++ E GY + + +Q   +   L  KDVL  AQTG+GKT AF L L S
Sbjct: 8   LFSDFALAAPLLRSVEELGYESPSPIQAKSIPVLLEGKDVLGMAQTGTGKTGAFALPLLS 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +           AP  L +APTRELA+QV   ++           +   GG ++  + R
Sbjct: 68  RIDIN------LRAPQLLVLAPTRELAIQVAEAMQAYARHLPDFHVLPVYGGQAMEPQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DHI+   L ++ ++AVVLDEADEML +GF DD++ IL  +P  
Sbjct: 122 GLKRGVHVVVGTPGRIQDHIKRGTLKLNQIQAVVLDEADEMLRMGFIDDVDEILSKTPAN 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+   I  +A+ + ++ V + I S       I+ R   V+   + +A+  IL
Sbjct: 182 RQVALFSATMPDQIRRIAQRHLRNPVEIAIKSSTSTVKAINQRYWAVSGMHKLDALTRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ + +   + L    +    L+G+++Q  R  A+  ++ G   + I
Sbjct: 242 EVEEFDAVIIFVRTKVATTELAEKLEARGYAASPLNGDMNQAMREKAIDRLKRGSLDIII 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 302 ATDVAARGIDVARVSHVVNYDIPLDTESYVHRIGRTGRAGRSGEAILFVAPREKRMLGAI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PS   I ++ +          ++++  +    + L+ ++  E     
Sbjct: 362 ERATGQLITPMRLPSQSDIADKRSAAFKNQ--ISEAMESQDLAFFETLIEEYQSEHDVGL 419

Query: 415 -KIAAGFLRIHRAGLC-APEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSS 467
            +IAA    + +      P EI   + V   DR      RD  R  +     +++     
Sbjct: 420 SEIAAALAYLAQKDRPLLPAEIKETAQVGFGDRQDRGQGRDQDRRDEPRRPRQNDDMARV 479

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            + + +G +   + + ++  L   +GI+ + IGAIR+    + V++     + +   +K 
Sbjct: 480 KYRIEIGHEHGVQPKNIVGALANEAGIDSKYIGAIRIFDSHSTVDLPEGMPNEVFTQLKR 539

Query: 528 DK--GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR--FKGASKN 573
               GI L+       D  G +S   +          R     F G  + 
Sbjct: 540 LHVLGIPLEISEAAPGDSEGERSGNRRPPAGPRKFGPRGGGDSFGGKPRR 589


>gi|255654809|ref|ZP_05400218.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449553|ref|ZP_06891330.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296878124|ref|ZP_06902139.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
 gi|296261617|gb|EFH08435.1| cold-shock DEAD box protein A [Clostridium difficile NAP08]
 gi|296430877|gb|EFH16709.1| cold-shock DEAD box protein A [Clostridium difficile NAP07]
          Length = 537

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 153/551 (27%), Positives = 258/551 (46%), Gaps = 28/551 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++P  + I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +
Sbjct: 3   ITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
             T+   N       +  A+ + PTRELA+QV  E+  L     G+      GG  + R+
Sbjct: 63  LETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  +V+GTPGR  DHI  K L + ++K ++LDEADEMLD+GFR+DIE IL   P
Sbjct: 117 IKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+   FSAT+   I  L K YQKD   + +  +    S+     +    S++   +  
Sbjct: 177 EERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K ++VFC+T+         L    +   AL G+L Q +R   +   R+G   +
Sbjct: 237 LVDVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+GMS   +     R+ +
Sbjct: 297 LVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE- 414
            + R     ++    P++  + E+              +     + + ++      D   
Sbjct: 357 DIERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLENFCNDEDYAM 416

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA  +++        E I                R      G      G     +++
Sbjct: 417 VDIAAALVKLSLGEEMKEEIIEEKP-----------RRERGDRKGGTGAKDGMIRLFINI 465

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDK 529
           G  Q+ +A+ ++  +    GI  + +G I +    TFVE+       +   +K       
Sbjct: 466 GRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEIPKKDAKTVIEKMKDIKIKGN 525

Query: 530 GIQLKYLGGEK 540
            I ++    +K
Sbjct: 526 KINIEKANKKK 536


>gi|149177361|ref|ZP_01855966.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
 gi|148843886|gb|EDL58244.1| ATP-dependent RNA helicase DeaD [Planctomyces maris DSM 8797]
          Length = 606

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 160/600 (26%), Positives = 268/600 (44%), Gaps = 53/600 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q I + L E GY   T +Q   +   L  +D++  AQTG+GKT AF L L S +  E
Sbjct: 15  ELCQPILDVLVELGYDTPTPIQAQTIPHLLEGRDLVGQAQTGTGKTAAFALPLLSKIDLE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                   AP  L +APTRELA+QVG   +   ++   +  +   GG     + + L+ G
Sbjct: 75  ------LRAPQVLVLAPTRELAIQVGESFKEYGSQLKGLQVLPIYGGADFKGQLQPLKRG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+R   L + +L+ +VLDEADEML +GF DD+E+IL+ +P   +  +
Sbjct: 129 VHVVVGTPGRVMDHMRRGTLKLDNLRCLVLDEADEMLRMGFIDDVEWILEQTPDNHQTAL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +A NY K    + +  + R    I  R  L     + +A+  IL     
Sbjct: 189 FSATMPEAIRRIAGNYLKSPQEITVKDKTRTADTIRQRYWLAKGHHKLDALTRILEAEET 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T++  +  ++ L    F    L+G++ Q++R   +  ++ G   + IATDVA
Sbjct: 249 DGVIIFVRTKSITTELSEKLEARGFLAAPLNGDIPQKQRERTVGRLKAGHVNIVIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L  + E  +HR GRTGRAGR G ++  +    QR    + R   
Sbjct: 309 ARGLDVDRISHVINYDLPGDSEAYVHRIGRTGRAGRTGEAIMFVSPREQRSLSGIERAIK 368

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAA 418
           + +     PS+  I +R  +R  +      ++   + +    LL++   E       IAA
Sbjct: 369 LKIERMELPSINQINKRRTERFKES--VTKAMDSPDFEQFQKLLSEFKTESERSEIDIAA 426

Query: 419 GFLRIHRAGLCAPEEITPVSLV-------------SGRDRFRDDSR-------------- 451
               + +       + TP                 SG+ +F+ + R              
Sbjct: 427 ALACMFQGKRPLFLKETPQQRETSHRETPQRQRDSSGKPQFQSERRFSREKEFKNKEFTK 486

Query: 452 -------AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                    +    S    +G   F + VG     +   ++  +   + ++ Q IG I +
Sbjct: 487 DKEKVFTPRRERATSETPEEGMERFRVQVGRSHGVKPGNIVGAIANEANLDSQYIGRIDI 546

Query: 505 QPDLTFVEVSADGVDLLRRTVK----LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGA 560
             + + V++       + R +K      + +++  L   +      K    K K  Q  A
Sbjct: 547 FDEYSTVDLPEGMPRDIFRALKNVWVSGQQLRISRLDQTESGAPKRKRFKSKGKPRQQKA 606


>gi|330468685|ref|YP_004406428.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328811656|gb|AEB45828.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 566

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 167/554 (30%), Positives = 268/554 (48%), Gaps = 24/554 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +  E 
Sbjct: 22  LRSELLAALSALGYEEPTPIQREAIGPLLAGRDLLGQAATGTGKTAAFALPLLQRMPDER 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+AL + PTRELAVQV           G  V    GG  + R+ R L NG  
Sbjct: 82  ----PTGDPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDNGVD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L + +L  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FS
Sbjct: 138 VVVATPGRALDHIARGTLRLGNLATVVLDEADEMLDMGFAEDIEAILEHTPEQRQTVLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  +A+ +  D VR+          +   +   A LVA + +  A+  +L    
Sbjct: 198 ATMPSRIDGMARAHLTDPVRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDVES 257

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDV
Sbjct: 258 PTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRGGTADLLVATDV 317

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 318 AARGLDVEQLSHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 377

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAG 419
              +  +  P+V  +R R  +  L      +S+  D+     V++     + D  ++A  
Sbjct: 378 GQRITIDKIPTVADLRTRRLE--LTQAALRESLLEDDLDPFRVIVETLSDEFDLMEVALA 435

Query: 420 FLRIHR-----AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            +++           A EEI  V++ + R+              +R    G++   + +G
Sbjct: 436 AVKLAHEATLPGAEEAAEEIPQVAVRAPRETRPGADARGGDRRPARPRANGTTQVFIGLG 495

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +     + L+  +   +GI  + IG+I +    + VEV     D +        G++  
Sbjct: 496 RRAGVRPQDLVGAITGETGIRGRDIGSIEIADRFSLVEVPIAVADEVIA------GLRGS 549

Query: 535 YLGGEKPDFRGYKS 548
            + G K   R  + 
Sbjct: 550 TIKGRKATVRRDRD 563


>gi|88856286|ref|ZP_01130945.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88814370|gb|EAR24233.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 638

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 161/598 (26%), Positives = 288/598 (48%), Gaps = 45/598 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+ E GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S
Sbjct: 18  TFSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQTGTGKTAAFALPILS 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L     +      P AL ++PTRELA+QV    E        V  +   GG +   +  
Sbjct: 78  RLDVSQSK------PQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYGGQAYGVQLS 131

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P+ 
Sbjct: 132 ALRRGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVETILADTPED 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  ++K Y +DA  + + S+    ++   R ++V+   + +A+  IL
Sbjct: 192 KQVALFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQKVDALTRIL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++      + L    +   A+SG+++Q +R   +  ++ G+  + +
Sbjct: 252 EVENFEGMIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQLKSGKLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 312 ATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTPRERRLLTAI 371

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-----EKKMVDVLLAKHDPE 414
            +     +     PSVE +      R   D    +++         + ++   +  HD  
Sbjct: 372 EKATRQPLTQMQLPSVEDVNSTRLTRF--DDAITEALNQQPRISAFRDIIAHYVEHHDIP 429

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGG--------------G 458
           +          A    P  ++     + R  +R   +SR  +                  
Sbjct: 430 ETDVAAALAVVAQGDTPLLLSAEEERAQRFSEREERNSRTDRPERGGDRGGDRGGDRPER 489

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG- 517
              + K  + + + VG +Q+ E R ++  L    G++R   G I+++PD + VE+ AD  
Sbjct: 490 RPRSTKPMTAYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIQIRPDFSLVELPADMS 549

Query: 518 ---VDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              ++ LR T    K I++       PD    K++G  ++ +      R + F+G ++
Sbjct: 550 KDVLERLRDTRISGKLIEIS------PD---RKANGGGARGADGKYPSRDRSFEGGAR 598


>gi|126698341|ref|YP_001087238.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|254974380|ref|ZP_05270852.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091773|ref|ZP_05321251.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099876|ref|ZP_05328853.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305765|ref|ZP_05349937.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313504|ref|ZP_05355087.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516192|ref|ZP_05383868.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649288|ref|ZP_05396190.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682458|ref|YP_003213743.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686057|ref|YP_003217190.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306519386|ref|ZP_07405733.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249778|emb|CAJ67595.1| putative ATP-dependent RNA helicase [Clostridium difficile]
 gi|260208621|emb|CBA61352.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212073|emb|CBE02663.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 537

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 153/551 (27%), Positives = 258/551 (46%), Gaps = 28/551 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++P  + I +A++E G+   + +Q   +   L  KDV+  AQTG+GKT AF + +
Sbjct: 3   ITKFEDLPISEGIKKAIAEMGFEEPSPIQAQSIPAILSGKDVIGQAQTGTGKTAAFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
             T+   N       +  A+ + PTRELA+QV  E+  L     G+      GG  + R+
Sbjct: 63  LETIDPNN------RSLQAVVLCPTRELAIQVSTEIRKLAKYSHGIKTLPIYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  +V+GTPGR  DHI  K L + ++K ++LDEADEMLD+GFR+DIE IL   P
Sbjct: 117 IKSLKSGVQVVIGTPGRTIDHINRKTLKMDNVKMIILDEADEMLDMGFREDIEMILSKIP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+   FSAT+   I  L K YQKD   + +  +    S+     +    S++   +  
Sbjct: 177 EERQTTFFSATMPRGILELTKRYQKDPEHIKVVRKELTVSNTKQYYIETRSSNKLEVLCR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K ++VFC+T+         L    +   AL G+L Q +R   +   R+G   +
Sbjct: 237 LVDVYDPKLSVVFCNTKRKADELVGDLQARGYFADALHGDLKQTQRDIVMDKFRNGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR+GMS   +     R+ +
Sbjct: 297 LVATDVAARGIDVDDVECVFNYDLPQDEEYYVHRIGRTGRAGREGMSFTFVFGKEMRKMK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE- 414
            + R     ++    P++  + E+              +     + + ++      D   
Sbjct: 357 DIERYTKSKLIKHNIPTITDVEEKKVGTFFAQVKQTIEEGHLTKQLQWLEGFCNDEDYAM 416

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA  +++        E I                R      G      G     +++
Sbjct: 417 VDIAAALVKLSLGEEMKEEIIEEKP-----------RRERGDRKGGTGAKDGMIRLFINI 465

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDK 529
           G  Q+ +A+ ++  +    GI  + +G I +    TFVE+       +   +K       
Sbjct: 466 GRNQRVQAKDIVGAIAGEVGIPGKVVGTIDIYDKYTFVEIPKKDAKTVIEKMKDIKIKGN 525

Query: 530 GIQLKYLGGEK 540
            I ++    +K
Sbjct: 526 KINIEKANKKK 536


>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31340034|sp|Q89AF9|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 602

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 162/549 (29%), Positives = 273/549 (49%), Gaps = 22/549 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   I  AL++ GYV  + +Q A +   ++ KDVL  AQTGSGKT AF L L  
Sbjct: 7   TFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLH 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  +         P  L + PTRELAVQV         K   V  +   GG     + +
Sbjct: 67  NIKLD------VRVPQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+VGTPGRL DH++ + L++S+L ++VLDEADEML +GF +D+E I+   P +
Sbjct: 121 SLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDR 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  AI  +++ + K+   + I S      DI     +V    + +A++  L
Sbjct: 181 HQTALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGK-KTDALIRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +    ++VL  + +   AL+G+++Q  R   L+ ++DGR  + I
Sbjct: 240 EAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLDILI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGRKG ++  +    +R    +
Sbjct: 300 ATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRKGKALLFVENRERRLLRNI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKK----MVDVLLAKHDPE 414
            R  N+S+     P  + + +R  ++  Q   + LDS    E +     +       D E
Sbjct: 360 ERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQLDSKDLHEYRGLLPKLQPNNNSLDIE 419

Query: 415 KIAAGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            +AA  L++    R+ +  PE I     +  +D +R+++          +  K    + +
Sbjct: 420 SLAAALLKMAQGERSLIVKPESIVRARHLKIKDTYRNNNYKSLNYVSRYNRDKNVDLYRI 479

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKL 527
            VG     E R ++  +     I+ + IG +R+  + + +E+     +       RT  L
Sbjct: 480 DVGRNDGVEVRHIVGAIANEGDISSRKIGNVRLFSNYSTIELPKGLSNTLPKTFIRTKIL 539

Query: 528 DKGIQLKYL 536
           +K I +K L
Sbjct: 540 NKFINIKLL 548


>gi|325918892|ref|ZP_08180966.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534878|gb|EGD06800.1| ATP-dependent RNA helicase CsdA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 636

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 172/633 (27%), Positives = 286/633 (45%), Gaps = 71/633 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQLK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVS----------------GRDRFRD 448
             IAA   ++ +             A EE TP                      R    D
Sbjct: 422 IDIAAAMAKLLQGDAPFLLPPPVRGAREEFTPQRNERADRGDRGERPRFEPKFERGPRAD 481

Query: 449 DSRAFKVGGGSRDNFK---------------GSSWFSLSVGSKQKAEARWLMPMLCRSSG 493
             RA +   G     +               G   + + VG     +   ++  +   +G
Sbjct: 482 GERAPRPPRGDDAGGERPRRDPPAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIANEAG 541

Query: 494 INRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPD 542
           +  + IG I +Q D + +++ AD     +  L++     + + ++ L          KP 
Sbjct: 542 LESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPSKPR 601

Query: 543 F-RGYKSSGFK--SKNSQDGATKRFKRFKGASK 572
           F RG K SG         D A    ++     +
Sbjct: 602 FPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPR 634


>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
 gi|224953734|gb|EEG34943.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
          Length = 529

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 155/541 (28%), Positives = 261/541 (48%), Gaps = 32/541 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I +A++  G+  ++ +Q   +  +L  KDV+  AQTG+GKT AFG+ +   +  +
Sbjct: 10  DIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQKVDPK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ + PTRELA+QV  E+  L      V  +   GG  + ++ R L+ G
Sbjct: 70  LKK------PQAIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISKQIRSLKAG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DH+R K +   ++  VVLDEADEMLD+GFR+DIE IL+  P++R+ ++
Sbjct: 124 VQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQTML 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ YQ++   + +  +     +I      V   ++   +  +L  +  
Sbjct: 184 FSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPKNKSEVLSRLLDIYDP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V      L    +    L G++ Q  R   +   R G+  + +ATDVA
Sbjct: 244 KLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++ V + +L  + E  +HR GRTGRAGR GM+   +      + + + R   
Sbjct: 304 ARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKDIRRYCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--PEKIAAGF 420
             +  +P PS+  + E   ++I    D    D        MV+  + + D     +AA F
Sbjct: 364 AKIKAQPIPSLNDVTETRVEKIFDRIDHYIEDQNLNKYIDMVEEFVNEKDYTAMDVAAAF 423

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L               +    G+D     + + K   G     +G     +++G KQ   
Sbjct: 424 L------------AEILGTADGKD-----AGSNKEDFGDTGAEEGMVRLFINIGKKQGIR 466

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKGIQLKYL 536
              ++  +   SGI+   +G I +    TFVEV  +    +   +K      K I ++  
Sbjct: 467 PGDILGAIAGESGISGNLVGTIDLYDKYTFVEVPREVASDVLEAMKNVKIKGKSINVEPA 526

Query: 537 G 537
            
Sbjct: 527 N 527


>gi|170782231|ref|YP_001710564.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156800|emb|CAQ01964.1| cold-shock DEAD-box RNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 585

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 153/579 (26%), Positives = 267/579 (46%), Gaps = 32/579 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + +AL + GY   +++Q A +   L  +DVL  AQTG+GKT AF L + 
Sbjct: 17  TTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLGVAQTGTGKTAAFALPIL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S L            P AL +APTRELA+QV    E   +    V  +   GG     + 
Sbjct: 77  SNLDVAQ------KTPQALVLAPTRELALQVCEAFERYASGMRGVHVLPVYGGQGYGVQL 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +PK
Sbjct: 131 SALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAEDVETILADTPK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +++ +FSAT+   I  ++  Y +D   + + ++    ++   R ++V+   + +A+  I
Sbjct: 191 SKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVSYPQKVDALTRI 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVF  T+       + L    +   A+SG+++Q +R   ++ +++G+  + 
Sbjct: 251 LETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTVEQLKNGKLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 311 VATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERRLLTA 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKH 411
           + +     +     PS E +      R        L D   LD+     + +V   +  H
Sbjct: 371 IEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAF----RDIVGHYVNHH 426

Query: 412 D--PEKIAAGFLRIHRAGLCAPEEITPV------SLVSGRDRFRDDSRAFKVGGGSRDNF 463
           D     +AA    + +           +               RD     +         
Sbjct: 427 DVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERRARPARGS 486

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVD 519
              + + + VG + + E R ++  L    G +R+  G I ++PD + VE+ A    D + 
Sbjct: 487 GNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAATSDDQLR 546

Query: 520 LLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
            L  T+   + I ++   G         +   + +  +D
Sbjct: 547 KLANTLINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD 585


>gi|294665477|ref|ZP_06730761.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604731|gb|EFF48098.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 167/629 (26%), Positives = 284/629 (45%), Gaps = 67/629 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 26  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 86  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++
Sbjct: 140 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQ 199

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 200 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 260 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 320 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 379

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 380 ERATRQPIEEMQLPSVDAVNDTRVVRFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 437

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDS-------------- 450
             IAA   ++ +             A E+  P       DR                   
Sbjct: 438 IDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADGE 497

Query: 451 -------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                        R  +      +   G   + + VG     +   ++  +   +G+  +
Sbjct: 498 RAARPPRGDDAGERPRREPSPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLESR 557

Query: 498 SIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF-RG 545
            IG I +Q D + +++ AD     +  L++     + + ++ L          KP F RG
Sbjct: 558 YIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPRG 617

Query: 546 YKSSGFK--SKNSQDGATKRFKRFKGASK 572
            K SG         D A    ++     +
Sbjct: 618 GKPSGRPNGPGRPMDRAGAPHRKGPPKPR 646


>gi|328544847|ref|YP_004304956.1| DEAD/DEAH box helicase [Polymorphum gilvum SL003B-26A1]
 gi|326414589|gb|ADZ71652.1| DEAD/DEAH box helicase domain-containing protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 673

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 287/563 (50%), Positives = 383/563 (68%), Gaps = 13/563 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           +RGY +LT VQE IL     E D+LVSAQTGSGKTVAFGLALA TLL + DR   A APL
Sbjct: 17  KRGYTSLTPVQETILAQAPAEADLLVSAQTGSGKTVAFGLALAPTLLGDADRLGAAGAPL 76

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           ALAIAPTRELA+QV  EL WLY + G   A C+GG+    ERR L+ G HIVVGTPGRL 
Sbjct: 77  ALAIAPTRELALQVKAELTWLYEEAGAQTASCVGGMDPRSERRALERGTHIVVGTPGRLR 136

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    L++S L+AVVLDEADEMLDLGFR+D+EFILD++P+ RR LMFSAT+   I  L
Sbjct: 137 DHIERGALDLSQLRAVVLDEADEMLDLGFREDLEFILDAAPEDRRTLMFSATVPKPIADL 196

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+ +QKDAVR++  S   QH DIDY A  VA ++R+NAI+N+LR++ A  AIVFCSTR +
Sbjct: 197 ARRFQKDAVRLSTISAREQHGDIDYFAHPVAPNERENAIINVLRFYEADKAIVFCSTREA 256

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V R T  LA   F V ALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGIDLP+L+LV
Sbjct: 257 VRRLTSRLANRGFSVAALSGELSQNERTHALQAMRDGRARVCVATDVAARGIDLPNLDLV 316

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           IHA+L +    LLHRSGRTGRAGRKG SV ++P   +R AERL   A+V   W  AP+  
Sbjct: 317 IHADLPTGKAGLLHRSGRTGRAGRKGSSVLIVPFPRRRAAERLLLSADVKAAWSDAPAAA 376

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
           AIR++D  R+L DP+  +  + ++  +   LL++H PE+IAA F+R+H++GL APE++T 
Sbjct: 377 AIRDKDKARLLADPVLTEPAEEEDLALARELLSEHGPERIAAAFVRLHQSGLPAPEDLTE 436

Query: 437 VSLVSGRDRFRDDSRAFKVGGGS----RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
                 R R R +   F+ G       R+ F+   WF LS+G K KA+ RWL+PM+CR+ 
Sbjct: 437 GGADDIRGRSRGERAPFESGPSRAFEVRNKFEDGIWFRLSLGHKHKADPRWLLPMICRAG 496

Query: 493 GINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
            + ++ +GAI++    T  E++        D++RR    ++G+ ++ +     D RG ++
Sbjct: 497 HVTKREVGAIKIGGTETLFEIAGSHAHKYADIIRREGSGERGVVIEPV-----DVRGGRA 551

Query: 549 SGFKSKNSQDGATKRFKRFKGAS 571
              ++++  +    R++R +  +
Sbjct: 552 PALRTEHDDEDRPSRYERARARA 574


>gi|159043402|ref|YP_001532196.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911162|gb|ABV92595.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 730

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 292/561 (52%), Positives = 374/561 (66%), Gaps = 21/561 (3%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY  LT VQ A+ +P L E D+LVSAQTGSGKTVAFGLA+A TLLA+   F PA+APL
Sbjct: 14  DKGYDTLTPVQIAVSDPALVEADLLVSAQTGSGKTVAFGLAIAPTLLADAAAFGPAAAPL 73

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L IAPTRELA+QV RELEWLY   G  +  C+GG+    ERR L  GAH+VV TPGRL 
Sbjct: 74  GLVIAPTRELAMQVRRELEWLYGPAGAQITSCVGGMDARDERRALGRGAHVVVATPGRLR 133

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    +++  ++AVVLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+ PAI +L
Sbjct: 134 DHIERGNIDLDAVRAVVLDEADEMLDLGFREDLEFILGAAPSERRTLMFSATVPPAIASL 193

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+ YQKDA R++  +E RQH+DI YRA++V   D +NAI+N+LRY+ A NAIVFC+TRA 
Sbjct: 194 AQLYQKDARRISTRAETRQHADIAYRAMVVGPRDEENAIINVLRYYEAANAIVFCNTRAM 253

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V+R T   +   FQVVALSGEL+Q ER++ALQ MRDGRA+VC+ATDVAARGIDLP+LELV
Sbjct: 254 VNRLTTRFSNRGFQVVALSGELTQSERTHALQAMRDGRAQVCVATDVAARGIDLPNLELV 313

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           +HAEL S+ + LLHRSGRTGRAGRKG+S  ++P   +++AERL + A V+  W   PS E
Sbjct: 314 VHAELPSSSDTLLHRSGRTGRAGRKGVSAVIVPVKFRKKAERLLKWAKVTPDWVSPPSAE 373

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
            +R +DA R+L+DP +   +   E +MV  L+    PE++AA  LR   A   APEEI+ 
Sbjct: 374 DVRAQDAARLLEDPAWETPVAEGEAEMVARLVEAFSPEQLAAAVLRAGSAQRSAPEEIS- 432

Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496
                          A  +    R  F  S+WF+LSVG   +AE RW++PMLCR  G +R
Sbjct: 433 ---------------AGDMTPTPRVPFGPSAWFTLSVGRASRAEPRWILPMLCRVGGFDR 477

Query: 497 QSIGAIRVQPDLTFVEVSADGV-DLLR---RTVKLDKGIQLKYLGGEKPDFRGYKSSGFK 552
             IGAIR+Q D TFVE+    V D L+    ++ L+ G  L  L  E PD      SG  
Sbjct: 478 DEIGAIRIQQDETFVEIKEAAVPDTLQGSEASITLEDGAVLSRL-AEAPDLSQRDGSGPA 536

Query: 553 SKNSQDGATKRFKRFKGASKN 573
            K  +        R   A + 
Sbjct: 537 RKPREGRGPVSSTRPSAAGRK 557


>gi|260574445|ref|ZP_05842449.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023341|gb|EEW26633.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 829

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 277/559 (49%), Positives = 372/559 (66%), Gaps = 20/559 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY  LT VQ+A+L+ D+  +D+LVSAQTGSGKTVAFG+A+A  LL   DR   A  P+A
Sbjct: 17  KGYETLTPVQDAVLSGDVTGRDLLVSAQTGSGKTVAFGIAIADELLRGADRLLFADTPMA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L IAPTRELA+QV REL+WLYA+TG ++A C+GG+    E+R L  GAHIVVGTPGRL D
Sbjct: 77  LIIAPTRELALQVARELDWLYAETGAIIATCVGGMDYRTEKRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  + L++S L+A VLDEADEMLDLGFR+D+EFIL ++P +RR LMFSAT+  AI  LA
Sbjct: 137 HIERRSLDLSGLRAAVLDEADEMLDLGFREDLEFILQAAPAERRTLMFSATVPKAIAELA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K++Q +A+R+  A E RQH DI+YRA+ V+  DR++AI N+LR++ A++AIVFC TR +V
Sbjct: 197 KDFQNNALRLQTAGEARQHVDIEYRALNVSTRDREHAIFNLLRFYEARSAIVFCKTRVAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP L+LVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQSLRDGRARVCIATDVAARGIDLPGLDLVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L SN E LLHRSGRTGRAG KG+S  ++     R+A+RL + A V   W  APS + 
Sbjct: 317 HADLPSNSEVLLHRSGRTGRAGSKGVSALIVTPAEFRKAQRLLQGAKVVAEWAKAPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ RD  R+L+ P+ + +  G+E ++   LL +   E++A+ F+R+ R G  APEE+   
Sbjct: 377 VQMRDDARVLEHPVLM-APAGNEAEIAATLLERFGAEQVASAFVRLWREGRSAPEELQDA 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R R               F  S WF+LSVG   +AEARWL+P +C   GI + 
Sbjct: 436 NAAPSAARER-------------TEFGESVWFALSVGRSGRAEARWLLPKICDGGGITKN 482

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE----KPDFRGYK--SSGF 551
            IGAIRVQ D TFV+++         + +L+ G+ ++ + GE    +P+    K      
Sbjct: 483 EIGAIRVQEDETFVQIAKPVASRFGASFELESGVVMRRMEGEPSMDRPERAPRKVYEKPS 542

Query: 552 KSKNSQDGATKRFKRFKGA 570
                 D A +  +  K A
Sbjct: 543 PRPARDDDAPRAPRADKPA 561


>gi|295090645|emb|CBK76752.1| Superfamily II DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 553

 Score =  310 bits (793), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 164/560 (29%), Positives = 280/560 (50%), Gaps = 23/560 (4%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE  N+   I  A+++ G+   + +Q   +  +L  KD++  AQTG+GKT AFG+
Sbjct: 1   METIRFEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            L   +  +N +        A+ + PTRELA+QV  E+  L      +  +   GG  + 
Sbjct: 61  PLLEKIDPKNKK------LQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIV 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L++G  +++GTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL  
Sbjct: 115 KQIRSLKDGVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSE 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ +MFSAT+  AI  +AK +QKD   V +  ++     +      V   ++   +
Sbjct: 175 LPEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVM 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  K ++VFC+T+  V      L    +    L G+L Q +R   +   R GR 
Sbjct: 235 CRLLDMYAPKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRT 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +
Sbjct: 295 DILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVL---LAKH 411
              + R     +V +P PS++ + E  A +IL Q    L     D    +         +
Sbjct: 355 LRDIQRYCKTKIVPQPIPSIDDVTEIKADKILCQAEEILQDNDMDRLIDIIERKVLEEDY 414

Query: 412 DPEKIAAGFLR--IHRAGLCAPEEITPVSLVSGRDRFRDDS-----RAFKVGGGSRDNFK 464
               +AAG LR  +        E+  P+  +     +RD +      +   G G+R    
Sbjct: 415 TTLDLAAGLLRIIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRSGGRGNRSGGD 474

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
             +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + 
Sbjct: 475 DMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPREQADIVLQA 534

Query: 525 VKLDKGIQLKYLGGEKPDFR 544
           +K D  I+ K +  EK + R
Sbjct: 535 MK-DARIKGKNIHIEKANRR 553


>gi|134096391|ref|YP_001101466.1| putative cold-shock DeaD box ATP-dependent RNA helicase (partial
           match) [Herminiimonas arsenicoxydans]
 gi|133740294|emb|CAL63345.1| putative ATP-dependent RNA helicase DeaD-like [Herminiimonas
           arsenicoxydans]
          Length = 826

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 158/603 (26%), Positives = 266/603 (44%), Gaps = 50/603 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L E GY   + +Q A +   L   DVL  AQTG+GKT AF L + S +  +
Sbjct: 13  NLSEPLLRVLKELGYEAPSPIQAATIPLLLNNSDVLGQAQTGTGKTAAFALPILSRIDIK 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  + P AL +APTRELA+QV    +   +       +   GG S   +   L+ G
Sbjct: 73  Q------TTPQALVLAPTRELAIQVAEAFQRYASHIPGFHVLPIYGGQSYGAQLSALRRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E IL  +P+ R+  +
Sbjct: 127 VHVVVGTPGRVIDHLEKGSLDLSKLKTMVLDEADEMLRMGFIDDVETILQKTPEARQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +A  Y +D   + +A++     +I  R  LV+   +  A+  IL     
Sbjct: 187 FSATMPSAIKRIATTYLRDPELITVAAKTGTADNIRQRYWLVSGMQKLEALTRILEAETF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+         L    F   A++G++ QQ+R   +Q ++DG+  + +ATDVA
Sbjct: 247 DGMIIFARTKLGTEELAGKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  +PE+  HR GRTGRAGR G ++  I    +   + + R   
Sbjct: 307 ARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAIERATR 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAA 418
             +     PSVE + +    +        ++I     ++   L+  ++ E      +IAA
Sbjct: 367 QPIAVLDLPSVEVVNDVRISKFKDQ--IAETIAAGGLEVFHSLIEDYEREHNVPAVEIAA 424

Query: 419 GFLRIHR--------------------------AGLCAPEEITPVSLVSGRDRFRDDSR- 451
              ++ R                                E           +RF    R 
Sbjct: 425 ALAKMARGDVPLLIDKNKPAPRESWGSEKPVSGGRFERAERFERNDRPERSERFERPERT 484

Query: 452 ----AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
               A +     R   +G   F + VG     +   ++  +   + ++ + IG I +  D
Sbjct: 485 ERSAAPRKERVPRAPDEGMQTFRIEVGHAHGVKPGNIVGAIANEANLDSKYIGRIEIYDD 544

Query: 508 LTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            + ++    + +D +D L++     + + +              +       +Q   + R
Sbjct: 545 YSTLDLPNSLPSDMLDHLKKVWVAGQQLNITADSEAASAPTAKPAPKKSESPAQVPFSDR 604

Query: 564 FKR 566
             R
Sbjct: 605 PAR 607



 Score = 85.0 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 26/233 (11%)

Query: 348 IPQNMQRRAERLF---REANVSVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +P +M    ++++   ++ N++   E   AP+ +    + ++   Q P      + D   
Sbjct: 554 LPSDMLDHLKKVWVAGQQLNITADSEAASAPTAKP-APKKSESPAQVPFSDRPARSDFAA 612

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             D        E       R  R    AP      +    ++ F  D    K  G  +  
Sbjct: 613 HFDKPAQSESRE-------RPARTERPAPASPLAAAATPKKEHFESDEPLVKEPGAQKRE 665

Query: 463 FK--------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                         F + +G     +   ++  +   +G+  + IG I +    + +++ 
Sbjct: 666 RTAQKKAGAVDMEAFRIEIGHAHGVKPANIVGAIANEAGLEAKYIGRIEIFEKHSLLDLP 725

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK----NSQDGATKR 563
           A   D +   +K +  I  + L       R  +      +        G  +R
Sbjct: 726 AGMPDEVFDQLK-NVSIAGQPLRISHSGLRPMEEKTMDKRVTLAPPSKGGDRR 777


>gi|269124787|ref|YP_003298157.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268309745|gb|ACY96119.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 562

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 169/559 (30%), Positives = 272/559 (48%), Gaps = 22/559 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+  GY   T +Q   +   L  +D+L  A TG+GKT AF L +        
Sbjct: 17  LRPELLTALAGLGYEEPTPIQREAIPHLLAGRDLLGQAATGTGKTAAFALPILHR----T 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    P AL + PTRELAVQV         + GV V    GG  + R+ + L+ G  
Sbjct: 73  PRPADEPDPGALVLVPTRELAVQVADAFHRYGREMGVRVLPVYGGAPIGRQIQVLKRGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  D I    L ++ L+ VVLDEADEMLD+GF +DIE IL  +P +R+ ++FS
Sbjct: 133 VVVATPGRALDLIDRDVLRLARLRTVVLDEADEMLDMGFAEDIEAILAQTPPQRQTVLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P I  +A+ + ++ VR+ IA   R   +   +  RA +V  + +  A+  +L    
Sbjct: 193 ATVPPRIDGIARRHLREPVRIEIARPEREVGRPPLVRQRAYVVDRAHKPAALGRLLDVEA 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC TR  V   T++L    ++  AL G +SQ +R   +  +R G A + IATDV
Sbjct: 253 PTAAIVFCRTRDQVDELTEMLNGRGYRAEALHGGMSQDQRDRVMGRLRAGTAELLIATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  V++  + S+P++ +HR GR GRAGR+G++  +      R  + + R  
Sbjct: 313 AARGIDVEHLTHVVNYHVPSDPDSYVHRIGRVGRAGREGVAFTLAEPREHRMLKSIERAT 372

Query: 364 NVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +  E  P+V  +R R  +     L++ L  D ++   + +V+ L  + D  ++A   
Sbjct: 373 GHKITIEKIPTVADLRARRLELTRAALRESLLTDDLEP-YRVVVETLSDEFDVMEVAMAA 431

Query: 421 LRIHRAGLCA---PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           +++ +    A    EEI  V+    R+      R  +   G     +G +   L VG + 
Sbjct: 432 VKLAQEAGGAAGDEEEIPEVAHRPPREGRDGGPRRERRAAGPPP--EGMTRLFLGVGRRA 489

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
               + L+  +   S +  + IGAI +    + VEV     D +   ++         + 
Sbjct: 490 GVRPQDLVGAIAGESSLRGRDIGAIEIADRFSLVEVPEHAADEVIDALRR------TTIK 543

Query: 538 GEKPDFRGYKSSGFKSKNS 556
           G K   R  + +  + +  
Sbjct: 544 GRKTIVRRERQNPGQRRPR 562


>gi|159904844|ref|YP_001548506.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis C6]
 gi|159886337|gb|ABX01274.1| DEAD/DEAH box helicase domain protein [Methanococcus maripaludis
           C6]
          Length = 546

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 163/540 (30%), Positives = 281/540 (52%), Gaps = 18/540 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ F+N+     I +AL ++G+ N T +QE  +   +   +DV+  AQTG+GKT AFG+ 
Sbjct: 1   MESFKNLGLSDEIIKALEKKGFTNPTPIQEQAIPILIEGKRDVVGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+         +    AL +APTRELA+QV  E++ +     + +    GG S+ R+
Sbjct: 61  ILETID------EGSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNIFPVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S  
Sbjct: 115 IRELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   +  
Sbjct: 175 TEKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSYYEIHSRDKFELLSR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        ++FC T+A V   +  L E  +    L G+++Q +R   L+  +  +  V
Sbjct: 235 IIDVEKEFYGLIFCKTKADVDEISSRLTEKGYAAEGLHGDMTQAQREKTLEKFKARKINV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G +V  +  +  R+ +
Sbjct: 295 LVATDVAARGIDINDLTHVVNYDIPQNPESYVHRIGRTGRAGKQGYAVTFVEPSEFRKFK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + + AN  +  E  P V+ I     ++I   +++ L        EK M   LL   DP+
Sbjct: 355 YIQKIANTEIRKEEVPDVKDIIGAKKRKIVSGIKEVLESGKYNDCEK-MAAELLEDADPQ 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNF----KGSSWF 469
           ++ +  L+       +      +   + R+ R R + R+                G+   
Sbjct: 414 EVLSAVLKYALKDELSESNYKRIGKPANREGRDRGEGRSEGRRDRGEGRRSFVSGGNVRL 473

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            +++G   K   + L+  + + S +  + I  ++V    +FV VS+D  +++  + K +K
Sbjct: 474 FVALGKLDKMNPKKLVDHISKKSDVKGRDIDDVKVFEKFSFVTVSSDNAEIILDSFKHEK 533


>gi|149185963|ref|ZP_01864278.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21]
 gi|148830524|gb|EDL48960.1| cold-shock dead-box protein A [Erythrobacter sp. SD-21]
          Length = 609

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 268/575 (46%), Positives = 362/575 (62%), Gaps = 20/575 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE +P VIGEAL+ RGY +LT VQ A++  + R +D++VSAQTGSGKTVAFGLALA  L
Sbjct: 2   SFETLPPVIGEALAARGYTDLTPVQSAVIEDEARGRDLVVSAQTGSGKTVAFGLALADAL 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           LAE    +    PLAL IAPTRELA+QV REL WLYA  G+ +A C+GG+   +ERR L+
Sbjct: 62  LAETANLALVDKPLALVIAPTRELALQVSRELGWLYAGAGLRIATCVGGMDASKERRALR 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IVVGTPGRL DH+    L++S L  VVLDEADEMLD+GFR+D+E ILD++P  RR 
Sbjct: 122 AGPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFREDLEEILDATPDGRRT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA+ YQ +++R+++  ++R H DI Y+A+ V+ S+ +NA+VN+LRYH
Sbjct: 182 LLFSATMPRPIERLAERYQTNSLRLSLVGQDRGHGDISYQAITVSPSEIENAVVNLLRYH 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ AI+FC+TR +V RF   L E  F VVALSGE SQ ER+ ALQ +RD RARVC+ATD
Sbjct: 242 EAETAILFCATRDNVRRFHATLQERGFGVVALSGEHSQSERNQALQALRDRRARVCVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP L LVIH E+  + E L HRSGRTGRAG+KG +  ++P N +RR E + R 
Sbjct: 302 VAARGIDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRRRVEGMLRG 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A +   W  AP+ E I ++D  R+L+        +  ++++   ++ K  PE IAA  +R
Sbjct: 362 AKIEAQWMDAPTPEMIHKQDRARLLEMLTAETEFEEHDRELAKEVMDKLSPEDIAASLVR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            HRA +  PEE+ P +  +     RD ++A ++  G    F+   WF + VG +Q AEAR
Sbjct: 422 AHRAKMPTPEELIPNTPEA-----RDKAKADRIRPG----FEDVVWFKIGVGRRQNAEAR 472

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL---DKGIQLKYLGGE 539
           W++P+LCR   I R  IGAIR+    T+ +V           V      +  Q   L  E
Sbjct: 473 WILPLLCRRGHITRNEIGAIRIGQFETWFQVPTAVAPKFAEAVARTASSEDEQDAILIEE 532

Query: 540 KPDF--------RGYKSSGFKSKNSQDGATKRFKR 566
            P+         R     G +S +      K F +
Sbjct: 533 APEGPRVEARQNRQDFGGGSRSGDGPRVRPKPFGK 567


>gi|227825056|ref|ZP_03989888.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
 gi|226905555|gb|EEH91473.1| DEAD/DEAH helicase [Acidaminococcus sp. D21]
          Length = 532

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/533 (28%), Positives = 260/533 (48%), Gaps = 27/533 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + I  AL + G+   + +Q+  +   L   D++  AQTG+GKT AFG+ +
Sbjct: 6   ITTFEDLNLDKKILSALKDMGFEEPSPIQKGAIPLALEGDDIIGQAQTGTGKTAAFGIPI 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++  +N          AL ++PTREL +QV  E+  +     V V    GG  + R+ 
Sbjct: 66  IQSIDEKN------RHVQALVMSPTRELCIQVAEEISKIGRLKRVHVLPVYGGQPIERQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G  +V+GTPGRL DH+R   +++ H+  +VLDEADEMLD+GF +DIE I+   P 
Sbjct: 120 RSLKHGVQVVIGTPGRLLDHLRRGTISLDHIHFLVLDEADEMLDMGFIEDIETIIKEVPP 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I +++K Y +    V I  E      ID         D+ + +  I
Sbjct: 180 ERQTMLFSATMPRPILSISKKYMRTPKVVAIHKEIVTAPTIDQYYY--ETRDKVDGLCRI 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+FC T+  V      LA   ++   L G+LSQ +R   ++  R  +  + 
Sbjct: 238 LDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQTQRDRVMKKFRQDQVDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  V++ ++  +PE+ +HR GRTGRAG  G+++  I     R+ + 
Sbjct: 298 VATDVAARGIDIDNITHVVNFDVPQDPESYVHRIGRTGRAGNTGVALTFITPREFRQLKL 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     ++    P+   + E+  ++I+   Q  L  +    D   + + L   +D   
Sbjct: 358 IERSVKTKIIRGQLPTDANVLEKQREQIISKMQSILEQNQYH-DYLPIAEALENDYDIHD 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  ++  + G  A EE      +                  +     G     +++G 
Sbjct: 417 IAAAAIKFMQEGNKALEEPQTADALPE-------------ALANTGARPGMVRLFINIGR 463

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
             K   R ++  +   + I  +SIG I +    +FVEV AD  + +   +  +
Sbjct: 464 SAKVTVRDIIQSIAIEAEIPAKSIGRISIYDKFSFVEVPADSAEKVMAVMHKN 516


>gi|145727|gb|AAA23674.1| deaD [Escherichia coli]
          Length = 571

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 154/538 (28%), Positives = 246/538 (45%), Gaps = 32/538 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 23  TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 83  QNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 137 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 197 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 257 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 317 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 376

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 377 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEEL 436

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +        + P   +  +  F                         
Sbjct: 437 DLETLAAALLKMAQGERTL--IVPPDGPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 494

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
             R +      + + VG     E R ++  +     I+ + IG I++    + +E+  
Sbjct: 495 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK 552


>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 731

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 164/591 (27%), Positives = 285/591 (48%), Gaps = 25/591 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + GY   + +QEA +   L  +DV+  AQTG+GKT AF L   S L   +
Sbjct: 79  LDARVLAAVEDLGYTAPSPIQEATIPLLLAGRDVVGLAQTGTGKTGAFALPALSRLAEAS 138

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    A+AP  LA+APTRELA+Q+    +      G V  +   GG     +   L+ GA
Sbjct: 139 DVNGRANAPQILALAPTRELALQLAEAFDAYAKHLGDVSVLAVYGGSPYGPQLSALRRGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI    L++S L+ +VLDEADEML +GF ++++ IL S+P  ++  +F
Sbjct: 199 QVVVGTPGRVIDHIERGSLDLSQLQTLVLDEADEMLRMGFAEEVDRILASTPASKQTALF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  ++  Y      V ++ ++   + I  R + V    +  A+  IL     +
Sbjct: 259 SATMPPAIRRISAQYLNSPEEVAVSRQSTTSATIRQRYLQVGHQYKLEAMTRILETEDHE 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  TRA      + L    F+ VA+SG+++Q++R   ++ ++ GR  + +ATDVAA
Sbjct: 319 GVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKTGRVDILVATDVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G +V  +    +   +++ R    
Sbjct: 379 RGLDVERISHVINYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQ 438

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPE--KIAA 418
            V     PSV  +     +R             +E+     ++V   + +H+ E  ++AA
Sbjct: 439 QVEEMAVPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDEHEAEPTRVAA 498

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDD---------------SRAFKVGGGSRDNF 463
               + + G         +    GR+R   D               S      G +R+  
Sbjct: 499 ALGMMAQGGRPLLAREQEIPFGGGRNRKDRDGGREGGRDGGRERGTSDGRGSRGPAREPA 558

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G++ + ++VG + +     ++  L    G+   +IGAI ++ + + VE+ AD       
Sbjct: 559 AGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLE 618

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKS-SGFKSKNSQDGATKRFKRFKGASKN 573
               +  I  + LG  K   R  ++    + +  + G  ++ +  +G  + 
Sbjct: 619 AA-ANAEINGRRLGLRKDTGRPTRAERDGEDRGERRGGFRKDRGERGGFRK 668


>gi|283798617|ref|ZP_06347770.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|291073603|gb|EFE10967.1| ATP-dependent RNA helicase [Clostridium sp. M62/1]
 gi|295115719|emb|CBL36566.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 553

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 164/560 (29%), Positives = 280/560 (50%), Gaps = 23/560 (4%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE  N+   I  A+++ G+   + +Q   +  +L  KD++  AQTG+GKT AFG+
Sbjct: 1   METIRFEELNLDAKILRAVTDMGFEAASPIQAKAIPLELEGKDIIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            L   +  +N +        A+ + PTRELA+QV  E+  L      +  +   GG  + 
Sbjct: 61  PLLEKIDPKNKK------LQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIV 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L++G  +++GTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL  
Sbjct: 115 KQIRSLKDGVQVIIGTPGRVMDHMRRKTIKFGQVHTVVLDEADEMLNMGFLEDMETILSE 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ +MFSAT+  AI  +AK +QKD   V +  ++     +      V   ++   +
Sbjct: 175 LPEERQTVMFSATMPQAIAEIAKKFQKDPEIVKVVKKDLTVPKVTQYYYDVKPKNKLEVM 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  K ++VFC+T+  V      L    +    L G+L Q +R   +   R GR 
Sbjct: 235 CRLLDMYAPKLSVVFCNTKKQVDELVLALQGRGYFAEGLHGDLKQVQRDRVMNGFRKGRT 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +
Sbjct: 295 DILVATDVAARGIDVDDVEAVFNYDIPQDEEYYVHRIGRTGRAGREGKAFSLVVGKEVYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVL---LAKH 411
              + R     +V +P PS++ + E  A +IL Q    L     D    +         +
Sbjct: 355 LRDIQRYCKTKIVPQPIPSIDDVTEIKADKILCQAEEILQDNDMDRLIDIIERKVLEEDY 414

Query: 412 DPEKIAAGFLRIHRAGLCAP--EEITPVSLVSGRDRFRDDS-----RAFKVGGGSRDNFK 464
               +AAG LR+          E+  P+  +     +RD +      +   G G+R    
Sbjct: 415 TTLDLAAGLLRMIMGEDNEDIIEDSRPLRSLDDLGDWRDRNYGRGRGSRSGGRGNRSGGD 474

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
             +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D++ + 
Sbjct: 475 DMARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPREQADIVLQA 534

Query: 525 VKLDKGIQLKYLGGEKPDFR 544
           +K D  I+ K +  EK + R
Sbjct: 535 MK-DARIKGKNIHIEKANRR 553


>gi|323701905|ref|ZP_08113575.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533209|gb|EGB23078.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum nigrificans
           DSM 574]
          Length = 532

 Score =  309 bits (792), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 174/538 (32%), Positives = 260/538 (48%), Gaps = 28/538 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N+     I + L + G+   T +Q+  +   L   D++  AQTG+GKT AFG+ L 
Sbjct: 8   KFFGNLELDSCIVQGLVDMGFEEPTPIQQLAVPLVLAGHDIIGQAQTGTGKTAAFGIPLV 67

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L              A+ I PTRELA+QVG E+  +       V    GG S+ R+ R
Sbjct: 68  ARLNF------RKRGVQAIIITPTRELAIQVGEEINKIGRYRRARVLPIYGGQSIERQIR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGRL DH+R + L +  +  VVLDEADEMLD+GF DDIE IL  +P +
Sbjct: 122 SLRQGVHVVVGTPGRLLDHLRRQTLKLDQVSMVVLDEADEMLDMGFIDDIEEILRHTPPE 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I+ LA+ Y  D   V ++  N     I+          +  A+  IL
Sbjct: 182 RQTLLFSATMPEEISRLARQYMTDPKFVTVSKANITAPSIEQIYYEAPEKHKLEALCRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC T+  V      L    +  V+L G+LSQQ+R+  ++  R G   + +
Sbjct: 242 DTTEITQGIVFCRTKRGVDELVAGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  +PE  +HR GRTGRAGR G+++ +I     R+   +
Sbjct: 302 ATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPREYRQLRLI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     PS+  + ER  + I      +  +      + +VD L  ++DP  IA
Sbjct: 362 ENLTKTRIKRGRLPSIADVAERQREGIKDRLVQIIEEGKLAYYRSVVDPLTDEYDPIDIA 421

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L+I      A E+I                    V  G      G     L++G K 
Sbjct: 422 AAALKISLDLEPAGEDID----------------LDTVNFGDTGARPGMVRLFLTLGRKD 465

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT--VKLDKGIQL 533
           +     ++ +    SGI    IG+I +  + +FVEV  D  + +      K  KG +L
Sbjct: 466 QTSPAEIVKLFSEESGIPGSKIGSINIYENFSFVEVPEDWANCVISCLHRKNFKGRRL 523


>gi|87200597|ref|YP_497854.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136278|gb|ABD27020.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 590

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 256/560 (45%), Positives = 346/560 (61%), Gaps = 16/560 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F N+PQ +  AL   GY  LT VQ A+   +   +D++VSAQTGSGKTVAFGLA+A  L
Sbjct: 16  TFANLPQPLAAALEGHGYTALTPVQSAVTEAEAHGRDLVVSAQTGSGKTVAFGLAMAGEL 75

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +      A+APLAL +APTRELA+QV REL WLYA T   +A C+GG+   RERR L 
Sbjct: 76  LGDEATLPFATAPLALVVAPTRELALQVSRELTWLYAPTQARIATCVGGMDPSRERRALS 135

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAHIVVGTPGRL DH+    L++S L+ VVLDEADEMLD+GFR+D+E +LD++P+ RR 
Sbjct: 136 HGAHIVVGTPGRLRDHLERGALDLSALRCVVLDEADEMLDMGFREDLEELLDATPEGRRT 195

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA+ YQ+DA+R++   E R H DI YRAV VA ++ + A+VN+LR+H
Sbjct: 196 LLFSATMPKPIEALARRYQRDALRISTVGEARGHGDIAYRAVAVAPAEIEAAVVNLLRFH 255

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A+ A++FC+TR +V R    L E  F  VALSGE SQ ER+NALQ +RD RARVC+ATD
Sbjct: 256 EAETAMLFCATRDNVRRLHATLVERGFTAVALSGEHSQSERNNALQALRDRRARVCVATD 315

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGIDLP L LV+H E+  + E L HRSGRTGRAG+KG +V ++P   +RR E + R 
Sbjct: 316 VAARGIDLPSLSLVVHVEIPRDAETLQHRSGRTGRAGKKGTAVLIVPFPRRRRVEMMLRG 375

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A ++  W   P+ EAIR +D +R+L+  L        + ++   LL +   E++AA  +R
Sbjct: 376 ARINADWVDVPTPEAIRAQDRERLLETILAPVETDEADMEIARTLLEQRTAEELAAALVR 435

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            HRA L  PEE+               +   +     R  F+   WF + VG +Q A+ R
Sbjct: 436 AHRAALPQPEELL------------SGTDEGRKQATHRAGFEDVVWFRMDVGRRQNADPR 483

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG---- 538
           W++P LCR    +RQ IGAIR+ P+ T+ +V     D     V+     +     G    
Sbjct: 484 WILPTLCRRGHASRQEIGAIRIAPNDTWFQVPRAIADRFADAVRRTADPEGGDENGIHIE 543

Query: 539 EKPDFRGYKSSGFKSKNSQD 558
             PD     +   +   + D
Sbjct: 544 PAPDGPREMARDNRRGAAND 563


>gi|119898413|ref|YP_933626.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119670826|emb|CAL94739.1| ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 650

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 166/611 (27%), Positives = 278/611 (45%), Gaps = 48/611 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +AL++ GY   + +Q A +   L   D+L  AQTG+GKT AF L + +
Sbjct: 6   TFADLALPAPLLQALADVGYETPSPIQAACIPHLLAGHDILGEAQTGTGKTAAFALPMLA 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L   + R      P  L + PTRELA+QV    +           +   GG S+  + R
Sbjct: 66  RLDLADRR------PQVLVLTPTRELAIQVAEAFQKYAHHLRDFHVLPLYGGQSMVVQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA I+VGTPGR+ DH+    L +  L  +VLDEADEML +GF +D+E+IL+ +P  
Sbjct: 120 QLSRGAQIIVGTPGRVMDHLERGSLKLDTLSGLVLDEADEMLRMGFIEDVEWILEHTPSG 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+  AI  +A  + ++   V I +     S I  R  LV   D+ +A+  IL
Sbjct: 180 RQTALFSATMPDAIRRVAHQHLREPKEVKIRAATSTVSAISQRYWLVRGVDKLDALTRIL 239

Query: 240 RYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   AIVF  T+ + +     L    +   AL+G+++Q  R   ++ +++G   + 
Sbjct: 240 DAEEKLDAAIVFVRTKTATTELADKLEARGYAAAALNGDMTQGLRERVIEQLKNGSLDIV 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  VI+ ++  + E  +HR GRTGRAGR+G ++  +     R  + 
Sbjct: 300 VATDVAARGIDVPRISHVINYDIPYDTEAYVHRIGRTGRAGREGSAILFVAPRESRMLKA 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHD 412
           + R     +     PS E +  R   +  Q  L LD++Q ++      ++       + D
Sbjct: 360 IERATRQPIEAIALPSREEVAGRRVAQFKQ--LVLDTLQQEDLGFFMEVVNGLVDEHEID 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEI----------TPVSLVSGRDRFRDD------------S 450
             +IAA    + +       E                   R+  RD             +
Sbjct: 418 AHEIAAALAFLAQRDKPLQVEESGRGWDIATAPERDRRPPRETVRDGMREERGEREPRPN 477

Query: 451 RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
           R   +             + ++VG  Q A  + ++  +    GI  + IG I +  D + 
Sbjct: 478 RDEILSRRRAFADGALVRYRIAVGRNQGATPKEIVGAIANEGGIEGKYIGQIHLFDDYST 537

Query: 511 VEVSA----DGVDLLRRTVKLDKGIQLKYLGGEK----PDFRGYKSSGFKSKNSQDGATK 562
           VE+ A    + + LL+RT      + ++ L   +    P  R  + +G   + ++    +
Sbjct: 538 VELPASLPGELLGLLKRTRVRQCALDIRPLTEAEAASTPARRPRRDAGDAPERTKRPYDE 597

Query: 563 RFKRFKGASKN 573
           R  R     ++
Sbjct: 598 RRPRDNDRPQS 608


>gi|119773652|ref|YP_926392.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
 gi|119766152|gb|ABL98722.1| ATP-dependent RNA helicase DeaD [Shewanella amazonensis SB2B]
          Length = 637

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 167/600 (27%), Positives = 283/600 (47%), Gaps = 39/600 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL E GY   T +Q A + P +  +D+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
            ++ A        +AP  L +APTRELAVQV                +   GG S++++ 
Sbjct: 66  CSVDAN------LNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +VVGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +P+
Sbjct: 120 QALRRGPQVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++ +FSAT+   I  +A  + ++ V ++IA+ +     I+ R V V+  ++  A+V +
Sbjct: 180 SRQLALFSATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + 
Sbjct: 240 LEVENTEGIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R  N  +     PS E++ ER   R+   + D L  + +   +  +  +    + D E
Sbjct: 360 IERATNSRISPMKIPSPESVAERRLSRLGEQVADILANEHLDFMKGAVAQLCQQLEVDTE 419

Query: 415 KIAAGFL-------------RIHRAGLCAPEE----ITPVSLVSGRDRFRDDSRAFKVGG 457
           ++AA  L                R      E         +    R+  R DSR      
Sbjct: 420 QLAAALLHQVQLERPLQLPAMHERQRDNFDERTGRGQNDRAERGDRNERRRDSRPLPGNF 479

Query: 458 GSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
           GS D  K         + + VG         ++  +   + I+ + IG I++   +T V+
Sbjct: 480 GSADTLKDNPDISMKRYLIDVGRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVD 539

Query: 513 V----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
           +      + +  L++     K + ++ +  +  D     +     +  +    +  +  +
Sbjct: 540 LPDGMPKEVLQHLKKVRVCGKPLNIREVSTDGSDEIPVSNGPIPKRTRKPSGDRPERGER 599


>gi|218134053|ref|ZP_03462857.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991428|gb|EEC57434.1| hypothetical protein BACPEC_01943 [Bacteroides pectinophilus ATCC
           43243]
          Length = 559

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 150/543 (27%), Positives = 268/543 (49%), Gaps = 29/543 (5%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + I +A+ + G+   + +Q   +   L  KD++  AQTG+GKT A+G+ +  +
Sbjct: 28  FEELNVDEKILKAIGDMGFEEASPIQAKAIPVVLEGKDIVGQAQTGTGKTAAYGIPMLQS 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +           A+ + PTRELA+QV  E+  L      +  +   GG  + R+ + 
Sbjct: 88  IDPK------LKCVQAVVLCPTRELAIQVADEIRKLAKYMSSIKVLPVYGGQEIVRQIKS 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DH+R K +    +K V+LDEADEMLD+GFR+D+E IL   P++R
Sbjct: 142 LKTGVQIVVGTPGRVMDHMRRKTVKFDKVKMVILDEADEMLDMGFREDMETILTQMPEER 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + +MFSAT+  AI  +A+ +Q DA  + +  +     +I+     V   ++D  +  ++ 
Sbjct: 202 QTVMFSATMPKAIMDIARTFQNDAEVIKVVRKELTVENIEQYYFEVRSKNKDEILSRLID 261

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+  V      L    +    + G++ Q +R   +   R G+  + IA
Sbjct: 262 IYNPKLSVVFCNTKKQVDDLISELKGRGYFADGIHGDMKQAQRDRVMNDFRKGKTEILIA 321

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+++V + +L  + E  +HR GRTGRAGR G++   +      + + + 
Sbjct: 322 TDVAARGIDVDDVDIVFNYDLPQDEEYYVHRIGRTGRAGRAGLAFSFVTGKEIYKLKDIE 381

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPE--KI 416
           R     ++    PS++ ++      + +         G  D + +V+  +   D     +
Sbjct: 382 RYCKTKIMARQIPSLDDVKNTRIDNLFEQVRKTLEAGGLADMRAIVEEKINDEDYTSIDL 441

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L++                V G D  R+D         +  N        +++G K
Sbjct: 442 AAALLKM----------------VLGDDHDREDDVLPVHFDDNDGNGSKMVRLFINIGKK 485

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            K +   ++  +   SG+  + +G+I +    TFVEV     D++ + +  +  I+ + +
Sbjct: 486 DKVKPSNILGAIAGESGMPGKLVGSIDMYDAYTFVEVPRKYADIVLKAMSNNVQIKGRTV 545

Query: 537 GGE 539
             E
Sbjct: 546 NIE 548


>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Prochlorococcus marinus str. NATL2A]
 gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
           NATL2A]
          Length = 589

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 153/548 (27%), Positives = 264/548 (48%), Gaps = 24/548 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + + +S++GY + T +Q+A +   L  +D++  AQTG+GKT AF L +   L   
Sbjct: 42  NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P  L +APTRELA+QV        A       +   GG     +   L+ G
Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH+R K LN SHL  +VLDEADEML +GF DD+E+IL+  P++R++++
Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y      + I +   +   I  R + V    + NA+  +L     
Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+A      + L  + + V  L+G++ Q +R   ++ +R G   + +ATDVA
Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +     L R   
Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVG 395

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KHDPEK 415
             +     P  + I     +++    +   S + D  +  ++L             DP+ 
Sbjct: 396 QPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKELDIDPKD 455

Query: 416 IAAGFLRIHRAGLCAPEE-----ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSS 467
           +    L +        E+     I   +  + R+  RD+++  +   G  DN +      
Sbjct: 456 LTLAALNLAVGFNALLEKGNEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDNNRLEDEMD 515

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            F + VG + + +   L+  +   +G+  +SIG IR+  + + V++     D + + +K 
Sbjct: 516 RFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDLPKQMPDKVFQALKK 575

Query: 528 DKGIQLKY 535
            K +  + 
Sbjct: 576 VKVMNREL 583


>gi|221133986|ref|ZP_03560291.1| ATP-dependent RNA helicase [Glaciecola sp. HTCC2999]
          Length = 622

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 160/583 (27%), Positives = 269/583 (46%), Gaps = 49/583 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I +AL + GY   + +Q   +   L   D+L  AQTG+GKT AF L + + +  E
Sbjct: 13  NLPSEILQALEKVGYETPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLANIDVE 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  S P  L +APTRELA+QV    +   + +  +  +   GG S   + R L+ G
Sbjct: 73  E------SFPQLLVLAPTRELAIQVAEAFQVYASFSKKIRVLPIYGGQSYDNQIRQLKRG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DHI+ K L +  LK +VLDEADEML +GF DD+E IL  SPK+++  +
Sbjct: 127 VQVVVGTPGRVIDHIQRKTLKLDRLKFLVLDEADEMLRMGFIDDVELILSHSPKEKQTAL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + Y  +   V IAS+    S I  R   VA   +  A+  IL     
Sbjct: 187 FSATMPGPIKKITERYLHEPKHVKIASKVSTASTIRQRYCQVAGHHKLEALTRILEVEQF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+ +       L+   + V  L+G++ Q+ R   ++ ++ G   + IATDV 
Sbjct: 247 DGVIVFVRTKTATLELADKLSARGYDVEPLNGDIPQKSRERTVERLKSGSIDILIATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  I    +R   ++ +   
Sbjct: 307 ARGLDVERVSHVINFDIPYDTESYVHRIGRTGRAGRQGDAILFISHREKRLLFQIEKTTK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA------KHDPEKIAA 418
            S+   P PS+  + E    R  +    +++I+ D  + +  ++       + DPE + A
Sbjct: 367 QSIEQMPIPSISEMNESRLVRFKES--VVEAIEDDSIQSLIPIIEMIKAETEADPEVLMA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF------------------------- 453
              +I +       +      ++ +   R+ S                            
Sbjct: 425 ALAKIAQGDEPLLLKEGDRPDLNAKPERRERSERDFGGRERGGRDRGRGGERGDRGGRGG 484

Query: 454 ----KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
               +          G   F + VG     +   ++  +   + I+ ++IGAI +    +
Sbjct: 485 ERGERRPRERTTPDAGMKRFRIDVGHVHHVKPGNIVGAIANEADISSKNIGAIEIYDTYS 544

Query: 510 FVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
            V++     A+  + L+ T    + + L+     KP  RG + 
Sbjct: 545 TVDLPAGMPAETREQLQGTRVAGQRLSLREWSD-KPPARGNRE 586


>gi|145295298|ref|YP_001138119.1| hypothetical protein cgR_1238 [Corynebacterium glutamicum R]
 gi|140845218|dbj|BAF54217.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 729

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 159/560 (28%), Positives = 279/560 (49%), Gaps = 30/560 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILSRID--- 165

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 166 ---KSVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     P+V+ +   D +++        S++  +  +   L+ ++        E IAA 
Sbjct: 463 PLHEMELPTVDQVN--DFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVPLEDIAAA 520

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-----------RDNFKGSSW 468
                ++G    +E+ P        R   D       G               + +  + 
Sbjct: 521 LATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRGDRGDRGSRFDRDDENLAT 580

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524
           + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D     +D LR T
Sbjct: 581 YRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLRDT 640

Query: 525 VKLDKGIQLKYLGGEKPDFR 544
               + I ++   G +P  R
Sbjct: 641 RISGQLINIERDSGGRPPRR 660


>gi|331268314|ref|YP_004394806.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
 gi|329124864|gb|AEB74809.1| ATP-dependent RNA helicase [Clostridium botulinum BKT015925]
          Length = 528

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 160/548 (29%), Positives = 265/548 (48%), Gaps = 32/548 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +   N       +   + + PTRELA+Q  +E+  L      +  +   GG  + R+ + 
Sbjct: 66  IDLNN------KSLQIMVLCPTRELAIQATQEVHKLGKYKKDISVLAVYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++GTPGR+ DHIR K L   ++K +VLDEADEMLD+GFRDDIE I+   P+ R
Sbjct: 120 LKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQEIPQNR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT++ AI  L+K YQ +A  + +  +     +I+ R + V  +++   +  ++ 
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +A
Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KI 416
           R     V     PS   + E  A   L+        +G   K +D +    D +     I
Sbjct: 360 RYTKTKVKRAEIPSASDVEEFKANTFLEKVKNTIE-EGHLGKYIDYIENLLDEDYATIDI 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L++        E +     +                 G      G     +++G  
Sbjct: 419 AAALLKMSLGEEKKEEILNISDDI-----------------GDTGAEPGMVRLFINIGRN 461

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            K +AR ++  +   +GI  + IG I +    TFVEV  +    +   +K +  I+ K +
Sbjct: 462 NKVQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEVPKENAKEVLEIMK-NNTIKGKKI 520

Query: 537 GGEKPDFR 544
             E  + R
Sbjct: 521 NIEPANAR 528


>gi|88813706|ref|ZP_01128932.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
 gi|88789025|gb|EAR20166.1| DEAD/DEAH box helicase-like protein [Nitrococcus mobilis Nb-231]
          Length = 586

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 160/566 (28%), Positives = 259/566 (45%), Gaps = 27/566 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  AL + GY   + +Q   +   L  +DVL  AQTG+GKT AF L L S
Sbjct: 10  TFQDLGLNPAVLNALHDVGYEVPSPIQAHTIPHILAGRDVLGQAQTGTGKTAAFALPLLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            L            P  L + PTRELA+QV    +   A+ TG  V    GG     + +
Sbjct: 70  RLDLSQA------VPQVLVLTPTRELAIQVAEAFQRYAARLTGFHVLPLYGGQDYRGQFQ 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ DH+R   L +  L  +VLDEADEML +GF DD+E+ILD  P  
Sbjct: 124 RLAHGTHVVVGTPGRVMDHMRRGTLKLDALACLVLDEADEMLRMGFIDDVEWILDQIPST 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +AK +  +   ++I         I  R  LV  + + +A+  IL
Sbjct: 184 RQIALFSATLPPVIRRIAKKHLHNPQEISIKVRTATAETIRQRYWLVNGTHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  TR +     + L    +   ALSG++SQ+ R + +Q ++ G+  + +
Sbjct: 244 EAEPFDGMIVFVRTRTATVELAEKLEARGYAAAALSGDISQKLREHTVQRLKGGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++ ++ E  +HR GRTGRAGR G ++  +    QR    +
Sbjct: 304 ATDVAARGLDVERISHVINYDIPNDTEAYVHRIGRTGRAGRAGDAILFVTPREQRMLRMI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHD--PEK 415
            +     +     PS EAI ++   R  Q    + + Q     +++++     HD    +
Sbjct: 364 EKATRQKITAMSPPSTEAINDQRIARFQQKISDVMAAQDLSFYRELMESYQRHHDVPAIE 423

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR----------DDSRAFKVGGGSRDNFKG 465
           IAA   ++ +          P        R             ++R       S      
Sbjct: 424 IAAALAKLVQGNTPLLLSPPPEPKPGVPGRRPFGAPDQFGKSANARNRPPKRNSPARATD 483

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LL 521
              + + +G     +   ++  +   +G++ Q IG I +    + VE+     +     L
Sbjct: 484 RVRYRIEIGRCHGVKPGNILGAIANEAGLDSQYIGRIDIFDRYSTVELPEGMPNAVLRHL 543

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYK 547
           +RT    + + L  L       R  +
Sbjct: 544 QRTRVAGRALALSPLETVTGRDRPRE 569


>gi|229826321|ref|ZP_04452390.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
 gi|229789191|gb|EEP25305.1| hypothetical protein GCWU000182_01693 [Abiotrophia defectiva ATCC
           49176]
          Length = 522

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 162/543 (29%), Positives = 274/543 (50%), Gaps = 28/543 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+ E GY   T +Q   +   +  +D+L  AQTG+GKT AF + + + + + N
Sbjct: 3   LDERILKAVKELGYEEATPIQTEAIPVAITGRDILGQAQTGTGKTAAFSIPILNNIDSGN 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
                     A+ + PTRELA+QV  E+  L     G+ +    GG  + ++ + L+ GA
Sbjct: 63  ------KHLQAVVLCPTRELALQVCGEIRKLSRYMHGIKLVPVYGGQDIVKQIKSLKQGA 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+R K +    +K +VLDEADEMLD+GFRDDIE IL   P++R+ ++F
Sbjct: 117 QIIVGTPGRVMDHMRRKTVKFDQVKIMVLDEADEMLDMGFRDDIETILAEVPEERQTMLF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + YQK A  + IA +     +I+     V  + +D  +  IL  +  +
Sbjct: 177 SATMPKPILDITRKYQKKAQNIKIAKKELTVENIEQYYYEVRRNYKDEILSRILDMYNPE 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVFC+T+  V      L    +    L G+L QQ+R   +   R+G+  + +ATDVAA
Sbjct: 237 LSIVFCNTKKKVEEVANELQGRGYFAEGLHGDLKQQQRDRVMGNFRNGKTEILVATDVAA 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  ++LVI+ +L  + E  +HR GRTGRAG+ G+++  +      + + + R  + 
Sbjct: 297 RGIDVKGVDLVINYDLPQDDEYYVHRIGRTGRAGKAGLALSFVSGKEVYKLKEIQRYCHT 356

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            +  +P PS++ +       +  +   +    D  +  E     V         +AA FL
Sbjct: 357 KIRLKPVPSLDDVTNTRVDSLFDELSEIIENEDLTKMTELIEQKVNEEDFTSLDVAAAFL 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++              L S      D+S       GS ++  G     +++G K + + 
Sbjct: 417 KLY--------------LSSKESNGEDNSELDSEFTGSTES--GMVRLFINIGKKDRVKP 460

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
             ++  +   SGI+ + +G I++    TFVEV A+    +   +K  K I+ K +  E  
Sbjct: 461 GDILGAIAGESGISGKLVGEIQMYDKYTFVEVPAENGKEVLFAMKNAK-IKGKKINIEPA 519

Query: 542 DFR 544
           + R
Sbjct: 520 NAR 522


>gi|124026185|ref|YP_001015301.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           NATL1A]
          Length = 589

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 152/548 (27%), Positives = 263/548 (47%), Gaps = 24/548 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + + +S++GY + T +Q+A +   L  +D++  AQTG+GKT AF L +   L   
Sbjct: 42  NFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPILERLKKN 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P  L +APTRELA+QV        A       +   GG     +   L+ G
Sbjct: 102 ------VGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSDFRNQINTLRRG 155

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH+R K LN SHL  +VLDEADEML +GF DD+E+IL+  P++R++++
Sbjct: 156 VDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWILEQLPEERQLVL 215

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y      + I +   +   I  R + V    + NA+  +L     
Sbjct: 216 FSATMPSEIRRLSKKYLNSPAEITIKATELKERLIRQRYISVQNVYKVNALQRVLEAVSE 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+A      + L  + + V  L+G++ Q +R   ++ +R G   + +ATDVA
Sbjct: 276 EGVIIFARTKAITIVVAEKLESYGYNVAVLNGDIPQNQRERTVERLRQGSINILVATDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +     L R   
Sbjct: 336 ARGLDVDRIGLVINYDMPFDREAYVHRIGRTGRAGRNGEAILFVNPRERSFLSNLERAVG 395

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KHDPEK 415
             +     P  + I     +++    +   S + D  +  ++L             DP+ 
Sbjct: 396 QPIEKMDIPDNDLINNNRIKKLQAKLIKAASTERDNPEEANILEELIKNVEKELDIDPKD 455

Query: 416 IAAGFLRIHRA-----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSS 467
           +    L +             + I   +  + R+  RD+++  +   G  DN +      
Sbjct: 456 LTLAALNLAVGFNALLENGNEDWIRQSAQRNTRNDRRDNNKFKQRRRGDFDNNRLEDEMD 515

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            F + VG + + +   L+  +   +G+  +SIG IR+  + + V++     D + + +K 
Sbjct: 516 RFRVEVGHRDRVKPGNLVGAIANEAGLKGRSIGRIRIFENYSLVDLPKQMPDKVFQALKK 575

Query: 528 DKGIQLKY 535
            K +  + 
Sbjct: 576 VKVMNREL 583


>gi|312143554|ref|YP_003995000.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904205|gb|ADQ14646.1| DEAD/DEAH box helicase domain protein [Halanaerobium sp.
           'sapolanicus']
          Length = 529

 Score =  309 bits (791), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 152/527 (28%), Positives = 253/527 (48%), Gaps = 26/527 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I +A+ + G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L   + A 
Sbjct: 10  DISNEILKAVDDMGFEETTPIQSNAIPAVLAGKDIVGQAQTGTGKTAAFGIPLLEEMDAN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P A+ + PTRELA+QV  EL+ L      +  +   GG S+ R+ R L  G
Sbjct: 70  KKD------PQAIILCPTRELAIQVSEELKRLAKYKKRIYTLPVYGGQSIQRQIRALNKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ DHIR   L ++ +   VLDEAD MLD+GF DDIE +L   P+ R+ L 
Sbjct: 124 VQIVIGTPGRVMDHIRRGTLKLNQINYFVLDEADVMLDMGFIDDIETVLRDIPEDRQTLF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI  +I  L++ YQK++  + +A E      I+     +   D+  A+  +L  +  
Sbjct: 184 FSATIPKSIRRLSRKYQKNSQFLKVAHEKLTVPSIEQYYYELRRHDKLKALTRLLDLNNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVFC+TR  V      L    +   A+ G L+Q +R   +   R+G   + +ATDVA
Sbjct: 244 ELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMGKFRNGIIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + +L  + +  +HR GRTGRAG+ G +   +      +   + +   
Sbjct: 304 ARGIDVDDIEAVFNYDLPQDTDYYVHRIGRTGRAGKSGKAFSFVVGKDIYKLRDIQKYTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +  +  PS + I E   ++  ++    +  + +    + + +++  +    +IAA  +
Sbjct: 364 TKIKRDKIPSADDIEEAKFEQFNEELSAYIESEKLDKYIELIENIIDEEFSAIEIAAALM 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +                    +    D  +      G      G     +++G K +   
Sbjct: 424 KKSF----------------NKADNDDTEKVESPNFGDTGAEPGMVRLFINIGKKDRISP 467

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
           R ++  +   +G+    IGAI +  + TFVEV  +    +   +K +
Sbjct: 468 RHIVGAIAGETGLPGGLIGAIDIYDNFTFVEVPREKGHDVLGVMKNN 514


>gi|227503818|ref|ZP_03933867.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
 gi|227199642|gb|EEI79690.1| superfamily II helicase [Corynebacterium striatum ATCC 6940]
          Length = 678

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 157/559 (28%), Positives = 273/559 (48%), Gaps = 32/559 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+++ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +  E 
Sbjct: 61  LPEEVQQAVAKVGFTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQVDPE- 119

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 120 -----VRHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+++++ +F
Sbjct: 175 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEEKQVALF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y  D   V + SE R + +I  R +L     + +A   IL      
Sbjct: 235 SATMPNSIRRLSKQYLNDPAEVTVKSERRTNDNITQRYLLTPHRQKMDAFTRILEVIEYD 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+         L +  +   A++G+++QQ+R   +  ++DGR  + +ATDVAA
Sbjct: 295 AIIVFCRTKHETEEVADSLRDAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 355 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 414

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     PS +A+ E+  ++ L      +S+   + +    ++ ++        + IAA 
Sbjct: 415 RLEEMDLPSADAVNEKRKEKFLAK--IGESLGDKQFEFFRDMVREYSAANNVAMDDIAAA 472

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS------------- 466
                + G     +  P      RDR R D    +  G                      
Sbjct: 473 LAVQLQGGKDFLLKEQPAPKRDRRDRDRFDRGDRRDRGDRGGRGGFRDRDRGPRRPDGDF 532

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLR 522
             + L VG +Q      ++  L    G++ +  G I +    T V++  +     +D L+
Sbjct: 533 ETYRLDVGKRQNVRPGAIVGALANEGGLSSKDFGRITIAVGHTLVDLPKNLDPAVLDRLK 592

Query: 523 RTVKLDKGIQLKYLGGEKP 541
            T    + I +    G  P
Sbjct: 593 DTRISGQLINIAKDTGRPP 611


>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 530

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 161/523 (30%), Positives = 263/523 (50%), Gaps = 26/523 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +ALSE G+   + +Q+A +   +   D++  AQTG+GKT AFG+ +   +   
Sbjct: 13  SLSKQVLQALSEMGFEEPSPIQKAAIPVAMDGVDLIGQAQTGTGKTAAFGIPICEKV--- 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +F    A  AL + PTRELAVQV  E+  +     +      GG S+ R+ R L+ G+
Sbjct: 70  NPKFQ---AVQALILTPTRELAVQVSEEISKIGKYRHIKPLPIYGGQSIDRQIRALRFGS 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            +VVGTPGR+ DH+    L + ++K VVLDEADEMLD+GF +DIE IL   PK+ R +M 
Sbjct: 127 QVVVGTPGRILDHLNRGTLKLQYVKMVVLDEADEMLDMGFVEDIETILKQVPKEERQVML 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  LA+NY      V ++ +      I+          + +A+  I+     
Sbjct: 187 FSATMPPEIKKLAQNYMHQPKSVAVSRDELTVPLIEQVFYEARDKIKVDALCRIIDMEDI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC T+  V      L    +   AL G+LSQQ+R   ++  RDG+  + +ATDVA
Sbjct: 247 GQAIIFCRTKRGVDELVAALEARGYFADALHGDLSQQQRDRVMKKFRDGKVELLVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ ++  VI+ ++  +PE+ +HR GRTGRAGRKG ++ ++     R+   + R   
Sbjct: 307 ARGLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSREYRQLRLIERLIK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             ++ +  P++  + ER A+ +      +   S  G  + +V  LL ++D   +AA  L+
Sbjct: 367 TRIIRKELPTLADVSERQAENLKNQLVKILQRSHLGTYRSIVGSLLEEYDSMDVAAAALK 426

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
               G+    E                     +  G+     G     +++G  Q+   +
Sbjct: 427 FAVEGVEERSEEED-----------------DIAFGNTGAAPGMVRLFMNIGRLQQVRPQ 469

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            ++  +   SGI    IG I +    TFVE+       +   +
Sbjct: 470 DIVRWIADESGIPGNIIGMINIYDKFTFVEIPEQHASRVLSCM 512


>gi|260774297|ref|ZP_05883212.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
 gi|260611258|gb|EEX36462.1| cold-shock DEAD-box protein A [Vibrio metschnikovii CIP 69.14]
          Length = 633

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 176/589 (29%), Positives = 289/589 (49%), Gaps = 34/589 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+E G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSTLLSALNEMGFVTPTPIQSAAIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKLDLTQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEIKTLGKNIKGLKVLEIYGGASIVDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ D I  + L++      VLDEADEML +GF DD+ +I++ SP+  + ++F
Sbjct: 127 HIIVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQSPETAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPIVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLIARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRT 366

Query: 366 SVVWEPAPSVEAIRERDAQRIL------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           S+     P  + + E    ++       +D   L+      +K+   L  + D   +AA 
Sbjct: 367 SMEEIQLPHRDKVAESRLTQLGLELEADKDHAALEKFAELVEKLQASL--EVDATTLAAI 424

Query: 420 FLRIHRAGLCAPEEITPVSLVS------------GRDRFRDDSRAFKVGGGSRDNFKGSS 467
            L+  +             L +                 R DSR  +   GSRDN +   
Sbjct: 425 LLKRQQGKRPLFYTGEDPMLAAIERDKSRRRDRRESGDGRTDSRDGRREFGSRDNVRNVD 484

Query: 468 W--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRT 524
           W  + L VG  Q  + + ++  L    G+ + SIGAI++    TFV++      D+  + 
Sbjct: 485 WDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKSMSSDVTGKL 544

Query: 525 VKLDKGIQLKYLGGEKPDFRGYK-SSGFKSKNSQDGATKRFKRFKGASK 572
            KL   I+ K +G    DF  ++ S G + + ++DG   R  R  GA +
Sbjct: 545 RKL--RIRQKEVGAVVCDFDDFRESRGRRPEGNRDGGGYRGAR-DGAPR 590


>gi|297569384|ref|YP_003690728.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925299|gb|ADH86109.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 612

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 162/607 (26%), Positives = 274/607 (45%), Gaps = 42/607 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +P    I  A+ E G+   T +Q   + P L  +D+L  AQTG+GKT AF L L S
Sbjct: 12  SFSQLPLAPAIHRAVDELGFETPTPIQAESIPPLLAGRDLLGQAQTGTGKTAAFSLPLLS 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L  +         P  L +APTRELA+QV   ++           +   GG ++  + R
Sbjct: 72  QLEVDK------KYPQLLVLAPTRELALQVAEAMQSFARHLPGFQVLPLYGGQNMTLQLR 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ GA +VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D +E IL+ +PK+
Sbjct: 126 RLQRGAQVVVGTPGRIQDHLRRGTLRLERLSAVVVDEADEMLKMGFIDAVEQILEHAPKE 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+  A+  +A  + K+ V + I       + I  +   V    + +A+  +L
Sbjct: 186 RQVALFSATMPTAVRKIAHRHLKNPVEIKIKRTTTSMAAITQQFWAVKGLHKLDALTRLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+ +     + L    F   AL+G+++QQ R   ++ ++ G   + +
Sbjct: 246 EAEEFEAVLVFVRTKVATVELAEKLEARGFAAAALNGDMTQQMREKTIEQVKSGALDIVV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  +    +R    +
Sbjct: 306 ATDVAARGLDVARITHVINYDVPYDTESYIHRIGRTGRAGRQGKAIIFVTPRERRLLAAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + +   +     PS + I +R      ++I +     +    +E           DP +
Sbjct: 366 EQASGQKIAPISLPSRQDISDRRVSLFKEKISEVMAQQELDFFEELIDDYQQEQDVDPRR 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR----------------FRDDSRAFKVGGGS 459
           IAA    + +          P    S R+                  R+ SR        
Sbjct: 426 IAAALSWLLQQERPLQAPAEPEGRASSREDDSALAGGGKKWEREPQRREHSRERDQERQH 485

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD--- 516
             +      + + VG +   E   ++  +   + ++ + IGAI++    + V++  D   
Sbjct: 486 DRSHDQWRRYRIEVGRQHGVEPGNIVGAITNEANLSSREIGAIKIYDFFSLVDLPHDLPQ 545

Query: 517 -GVDLLRRTVKLDKGIQLKYLG-----GEK----PDFRGYKSSGFKSKNSQDGATKRFKR 566
             V  L +     + + L+  G     G K    P  R  K    ++   +   T R + 
Sbjct: 546 PLVRHLEKVWIRSRQLYLRPDGEPLPEGAKAKAGPSGRAGKPPRPRTGVRRYPRTNRSEP 605

Query: 567 FKGASKN 573
            KG  + 
Sbjct: 606 RKGGKRR 612


>gi|254490715|ref|ZP_05103899.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224464070|gb|EEF80335.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 605

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 166/594 (27%), Positives = 268/594 (45%), Gaps = 35/594 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +A+ E GY   + +Q   + P L  +D+L  AQTG+GKT AF L L S L    
Sbjct: 17  IAPAIVKAIQEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGKTAAFSLPLLSRLNDRQ 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV   ++           +   GG S+  + R LQ   
Sbjct: 77  ------KTPQMLVLTPTRELAIQVAEAIQGYGRHIKNFHVLPIYGGQSMGIQLRQLQRNP 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DHIR   L + +L+++VLDEADEML +GF DD+E IL  +PK R++ +F
Sbjct: 131 QVIVGTPGRILDHIRRGKLALENLQSLVLDEADEMLRMGFIDDVETILQETPKDRQVALF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ Y  + V V+I S+      I+ R   V    + +A+  IL      
Sbjct: 191 SATMPKPIHRVAQRYLNNPVEVHIKSKTSTVDTINQRYWQVTGLHKLDALTRILEVEEFD 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S     + L    +    L+G+++Q  R   ++ M+ G+  + +ATDVAA
Sbjct: 251 GMIIFVRTKNSTVDLAEKLEARGYASSPLNGDMNQALREKTIEKMKAGKIDILVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +    
Sbjct: 311 RGLDIQRMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPRERRMLGAIEKATKQ 370

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKH--DPEKIAAGFL 421
           ++     PS E I +R      Q        Q     +K++     +H  DP ++AA   
Sbjct: 371 TITRMQLPSSEDIADRRVMSFKQQMTETIESQDLAFFEKLITSYQEEHNADPVEVAAALA 430

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSR---------------AFKVGGGSRDNFKGS 466
            + +                 R+R   DSR                           +G 
Sbjct: 431 FLVQKHRPLKPVSHVSERKQPRERADRDSRQTNREPRSERPERAPRAPRTRAEHKPEEGM 490

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLR 522
             + + VG++   E + L+  +   +G+  Q IG I +  D +FV++      D    LR
Sbjct: 491 KTYRVEVGAEHNVEPKHLVGAIANEAGLESQLIGRISIMDDHSFVDLPDGMPKDIFQHLR 550

Query: 523 RTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +     + +Q+          EKP     +  G   K     A KR  + +   
Sbjct: 551 KVWVNQRQLQISMPDSTPDVMEKPAIPARQKPGRTKKRPAIAAKKRQSKSRPKP 604


>gi|91794665|ref|YP_564316.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716667|gb|ABE56593.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 611

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 168/602 (27%), Positives = 280/602 (46%), Gaps = 44/602 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY N T +Q A ++P +  KD++  AQTG+GKT AF L L + +  + 
Sbjct: 13  LSENLLRALDELGYENPTPIQSASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKVDMK- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 +AP  L +APTRELAVQV                +   GG S+H++   L+ G 
Sbjct: 72  -----INAPQILVLAPTRELAVQVAEAFGSYAKHMKGFHVLPIYGGQSMHQQLSALKRGP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE++L+  PK  ++ +F
Sbjct: 127 QVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWVLEHKPKDSQLALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  +  + V ++IA+       ID R V V+  ++  A+V +L     +
Sbjct: 187 SATMPEQIKRVAAKHLTNPVNISIAASTTTVESIDQRFVQVSQHNKLEALVRVLEVENTE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + IATDVAA
Sbjct: 247 GVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 307 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAGF 420
            +     PS E++ ER   R+ +  L  +++ GD   M   +       + D + +AA  
Sbjct: 367 RIAPMKVPSPESVAERRLSRLGE--LIQETLNGDLDFMKSAVAELCQQLEVDTDLLAAAL 424

Query: 421 LRI---------------HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           L+                 R       E +        DR     R  +    +  +F G
Sbjct: 425 LQQVQAERPLQLPAIQERQRDSRDERSERSGERSERSGDRGERSQRPRRDARPAPTSFGG 484

Query: 466 -----------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513
                       + + + VG         ++  +   + ++ + IG I++   +T V++ 
Sbjct: 485 PEGLKDNPDVKMNRYVIDVGRDNGVGVGNIVGAIANEANLDSRYIGQIQLYDQVTTVDLP 544

Query: 514 ---SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
                D +  LR+     + + L+  G E     G  S+    + S+    +     +  
Sbjct: 545 DGMPKDVLQHLRKVRVCGRALNLREAGSETFVDSGRSSAPRSDRPSRPRGDRPAGAERRP 604

Query: 571 SK 572
            K
Sbjct: 605 RK 606


>gi|62390044|ref|YP_225446.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325380|emb|CAF19860.1| Superfamily II DNA and RNA helicase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 157/562 (27%), Positives = 278/562 (49%), Gaps = 32/562 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L + + +    
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARID--- 165

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRE A+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 166 ---KSVRSPQALVLAPTREQALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     P+V+ +   D +++        S++  +  +   L+ ++        E IAA 
Sbjct: 463 PLHEMELPTVDQVN--DFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVPLEDIAAA 520

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-------------RDNFKGS 466
                ++G    +E+ P        R   D       G                 + +  
Sbjct: 521 LATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRDDENL 580

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLR 522
           + + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D     +D LR
Sbjct: 581 ATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLR 640

Query: 523 RTVKLDKGIQLKYLGGEKPDFR 544
            T    + I ++   G +P  R
Sbjct: 641 DTRISGQLINIERDSGGRPPRR 662


>gi|90022676|ref|YP_528503.1| ATP-dependent RNA helicase DeaD [Saccharophagus degradans 2-40]
 gi|89952276|gb|ABD82291.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 595

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/589 (26%), Positives = 263/589 (44%), Gaps = 30/589 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   + +Q   +   L  +D+L  AQTG+GKT AF L + + L    
Sbjct: 13  LNEHILKALTDVGYETPSPIQAKSIPELLAGRDILGQAQTGTGKTAAFALPILNNLDLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELA+QV    +           +   GG    ++ R L+ G 
Sbjct: 73  ------KAPQVLVLAPTRELAIQVAEAFQSYAHHLPGFHILPIYGGQGYDQQIRALKRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R   L +  LK +VLDEADEML +GF DD+E++L  +P  R++ +F
Sbjct: 127 HVIVGTPGRVMDHMRKGTLKLDQLKVLVLDEADEMLRMGFIDDVEWVLTQTPPTRQIALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  Y  D   + I  + +    I  R   V+   + +A   IL      
Sbjct: 187 SATMPKEIAKVANKYLNDPALIKIEVKTQTADTIRQRYWGVSGHHKLDATTRILEAEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + LA   +   AL+G++SQ  R   ++ ++ G+  + +ATDVAA
Sbjct: 247 AMIIFVRTKTTTIELAEKLAARGYSSAALNGDISQNLRERTVEKLKKGQIDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR G ++  +     R    + +    
Sbjct: 307 RGLDVDRISHVLNYDIPYDSEAYVHRIGRTGRAGRSGEAILFVAPREMRMLRTIEKATRK 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFL 421
            +     PS + I +    R  Q  L      G E             + D   IAA   
Sbjct: 367 PIELMKMPSTDDINQIRVDRFKQKILDAAKSPGLEFFRKLVTEMQHDNELDTADIAAALA 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDD------------SRAFKVGGGSRDNFKGSSWF 469
            +++       E  P            D             R  +  G  R+  +    +
Sbjct: 427 LLYQGDQPLLLEDRPQRQQREFKERDGDFDKRGRGDRDGRGREGRDRGKGREKDENMETY 486

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG K   +   ++  +   + I+ + IG I++  D + V++      +  + L +T 
Sbjct: 487 RIEVGRKDGVKPGDIVGAIANEANISSKFIGHIKLHDDFSTVDLPSGMPKEVFETLSKTW 546

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS---QDGATKRFKRFKGAS 571
              K +++    G     RG     FK K     +DGA ++ +  K  S
Sbjct: 547 VCQKQLRITRAEGNAGGGRGRGGDDFKRKKRPANKDGAPRKPRAKKADS 595


>gi|119477499|ref|ZP_01617690.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449425|gb|EAW30664.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 608

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 161/593 (27%), Positives = 275/593 (46%), Gaps = 36/593 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+S  GY   + +Q A +   L   D+L  AQTG+GKT AF L L S +  + 
Sbjct: 14  LSAPVQKAVSIVGYEQPSPIQAATIPHLLNGDDLLGVAQTGTGKTAAFALPLLSRIDLKK 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 ++P  L +APTRELA+QV    +   ++      +   GG  +  + R L+ GA
Sbjct: 74  ------NSPQVLVLAPTRELAIQVAEAFKTYASQMKGFHVLPIYGGQDMSGQLRQLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+R   LN+  L  +VLDEADEML +GF DD+E+IL+ +P KR++ +F
Sbjct: 128 HVVVGTPGRVMDHLRRGSLNLDGLTGLVLDEADEMLRMGFIDDVEWILEHTPPKRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+   I  +A  Y  D   V IA++      I+ R  ++     + +AI  IL     
Sbjct: 188 SATMPKPIRKVADRYLSDPKEVRIATDATTAPRIEQRYLIVNGFDRKLDAITRILEADDF 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ + +   + L    +   AL+G+++Q  R   +  ++  +  + +ATDVA
Sbjct: 248 DAMIIFVRTKTATAELAEKLEARGYSASALNGDMNQALRERTINRLKKKQLDIIVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  V++ ++  +PE  +HR GRTGRAGR+G ++  +    +R    + +   
Sbjct: 308 ARGIDVERVSHVLNFDIPYDPEAYVHRIGRTGRAGREGKAILFVAPREKRLLHTIEKSTR 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHD--PEKIAA 418
            +++    PS   +  +  Q   +  L  +++          +LA    +HD   E IA 
Sbjct: 368 QTILPMDLPSGSEVSNKRIQSFKE--LLTETLANQSLDFFHDILAGYSVEHDRSSEDIAC 425

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGR---------------DRFRDDSRAFKVGGGSRDNF 463
               + +          P                      +R  + +R       S+ + 
Sbjct: 426 ALAYLIQKDKPLQVADAPQPKRRRETEKPNNRESEGRRTSERRPERTREKSPRTASKSDD 485

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVD 519
                + + VG     +   ++  +   +GI+  +IG I++  + + V++ A    + + 
Sbjct: 486 LNMVKYRIEVGRNDDVKPGDIVGAISNEAGIDGGAIGHIKLHDEYSTVDLPAGMPKEILH 545

Query: 520 LLRRTVKLDKGIQLKYLGGE-KPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            LR+    +   Q+K   G+   D  G K S  K K   D      K  KG  
Sbjct: 546 HLRKVRICNLPTQIKLDNGDGASDSTGAKPSAKKRKPKADAKKTGAKASKGKG 598


>gi|19552380|ref|NP_600382.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21323923|dbj|BAB98549.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 732

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/562 (28%), Positives = 279/562 (49%), Gaps = 32/562 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ + GY   + +Q   +   +  +DV+  AQTG+GKT AF L + + +    
Sbjct: 109 LPERVLDAVRKVGYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARID--- 165

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 166 ---KSVRSPQALVLAPTRELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGA 222

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P ++++ +F
Sbjct: 223 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALF 282

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + + SE R +++I  R + VA  ++ +A+  IL     +
Sbjct: 283 SATMPNGIRRLSKQYLNNPAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFE 342

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 343 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 402

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 403 RGLDVERISHVLNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 462

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     P+V+ +   D +++        S++  +  +   L+ ++        E IAA 
Sbjct: 463 PLHEMELPTVDQVN--DFRKVKFADSITKSLEDKQMDLFRTLVKEYSQANDVPLEDIAAA 520

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-------------RDNFKGS 466
                ++G    +E+ P        R   D       G                 + +  
Sbjct: 521 LATQAQSGDFLLKELPPERRERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRDDENL 580

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLR 522
           + + L+VG +Q      ++  L    G+N +  G I +  D T VE+  D     +D LR
Sbjct: 581 ATYRLAVGKRQHIRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLR 640

Query: 523 RTVKLDKGIQLKYLGGEKPDFR 544
            T    + I ++   G +P  R
Sbjct: 641 DTRISGQLINIERDSGGRPPRR 662


>gi|284048361|ref|YP_003398700.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952582|gb|ADB47385.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 544

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 154/530 (29%), Positives = 264/530 (49%), Gaps = 27/530 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + I  AL E G+   + +Q+  +   L  +D++  AQTG+GKT AFG+ +
Sbjct: 18  ITSFEDLNLDRKILAALKEMGFEEPSPIQKGAIPMALEGEDLIGQAQTGTGKTAAFGIPI 77

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  ++          AL ++PTREL +QV  E+  +     + V    GG  + R+ 
Sbjct: 78  IQKINEKDRHI------QALVMSPTRELCIQVADEISKIGKTKRIRVLPVYGGQPIERQI 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +V+GTPGRL DHIR   +++ ++  +VLDEADEMLD+GF DD+E I+ + P 
Sbjct: 132 RSLKRGIQVVIGTPGRLLDHIRRGTIDLEYVNFLVLDEADEMLDMGFVDDMENIIKNVPP 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I +++K Y +    V I  E      ID         D+ + +  I
Sbjct: 192 ERQTMLFSATMPRPILSISKKYMRAPKVVAIHKEVVTAPTIDQYYY--ETRDKVDGLCRI 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+FC T+  V      LA   ++   L G+LSQ +R   ++  R G+  + 
Sbjct: 250 LDTTDDCKMIIFCRTKKGVDELVIALATRGYEAEGLHGDLSQNQRDRVMKKFRSGQVDIL 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ ++  V++ ++ S+ E+ +HR GRTGRAG  G+++  I     R+ + 
Sbjct: 310 VATDVAARGLDIDNITHVVNFDVPSDSESYVHRIGRTGRAGNTGVALTFITPREFRQLKL 369

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     ++    P+  ++ ER  ++I   +Q  L  D  Q D   +V+ L   +D + 
Sbjct: 370 IERSIKTKIIRGTLPTDASVLERQREQIVSKMQTILEQDRYQ-DYLPIVETLEKDYDVQD 428

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  L+  + G  A EE               +  +      +     G     +++G 
Sbjct: 429 IAAAALKFMQEGAKALEEPA-------------EEESLPDALANTGAKPGMVRLFVNIGR 475

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             +   R ++  +   + I  +SIG I +    +FVEV  +  + +   +
Sbjct: 476 SSRVTVRDIVQSIAIEAEIPARSIGRISIYDKFSFVEVPMEHAEKVLAVM 525


>gi|124022674|ref|YP_001016981.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123962960|gb|ABM77716.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 636

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/547 (27%), Positives = 254/547 (46%), Gaps = 24/547 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+E+GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L    
Sbjct: 90  FSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLQDHG 149

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R      P  L +APTRELA+QV             +  +   GG     +   L+ G 
Sbjct: 150 SR------PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGV 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+R   L+ S L+ +VLDEADEML +GF DD+E+IL+  PK+R+M++F
Sbjct: 204 DVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPKERQMVLF 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + I S +++   I  R + +  S +  A+  +L     +
Sbjct: 264 SATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGE 323

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L      V  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 324 GVIIFARTKVITLTVAEALESAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAA 383

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R      R    
Sbjct: 384 RGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGFERAVGQ 443

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KHDPEKI 416
            +     P+  AI +    R+ Q        + D  +   +L              PE++
Sbjct: 444 PIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSEETALLQELIQRVVEELSLSPEQL 503

Query: 417 AAGFLRIH--------RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           A   L +         +A     ++ T  S  + R          +    SR        
Sbjct: 504 AVAALELAVGPGPILVQADEGWLQQSTQRSRRNDRHEISRGGSGRRPERSSRPPEDHMER 563

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
           F + VG + + +   L+  +   SG+  + IG I++    + V++     + + + +K  
Sbjct: 564 FRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIFESHSLVDLPKGMPEDVFKDLKRL 623

Query: 529 KGIQLKY 535
           K +  + 
Sbjct: 624 KVMNREL 630


>gi|289668227|ref|ZP_06489302.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 640

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 171/637 (26%), Positives = 286/637 (44%), Gaps = 75/637 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSGAVMKAVANVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQLK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAICRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +S+ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITESLAGGQIDMYRDLLQRYETENNVPA 421

Query: 415 -KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------ 464
             IAA   ++ +     L  P         + R+R     R  +   G R  F+      
Sbjct: 422 IDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPRERNERADRGDRNDRGERPRFEPKFERG 481

Query: 465 -----------------------------------GSSWFSLSVGSKQKAEARWLMPMLC 489
                                              G   + + VG     +   ++  + 
Sbjct: 482 PRADGERAGRPPRGDDAGGERPRRDPVAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIA 541

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG------- 538
             +G+  + IG I +Q D + +++ AD     +  L++     + + ++ L         
Sbjct: 542 NEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASP 601

Query: 539 EKPDF-RGYKSSGFK--SKNSQDGATKRFKRFKGASK 572
            KP F RG K SG         D A    ++     +
Sbjct: 602 SKPRFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPR 638


>gi|114564866|ref|YP_752380.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114336159|gb|ABI73541.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 634

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 163/604 (26%), Positives = 280/604 (46%), Gaps = 44/604 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  +L E GY N T +Q A ++P +  KD++  AQTG+GKT AF L L + +  + 
Sbjct: 12  LSESLLRSLDELGYENPTPIQAASIDPLMAGKDIIGQAQTGTGKTGAFALPLLNKIDMK- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 +AP  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 71  -----INAPQILVLAPTRELAVQVAEAFGSYAKFMKGFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L + +LKA+VLDEADEML +GF DDIE++L+  P   ++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLDNLKALVLDEADEMLKMGFIDDIEWVLEHKPADSQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  +  + V ++IAS       ID R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVAAKHLSNPVNISIASSQTTVESIDQRYVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDSEAYVHRIGRTGRAGRTGMAILFVTNREMRMLRTIERATNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFL- 421
            +     PS E++ ER   R+ +      +   D  K     L    + D + +AA  L 
Sbjct: 366 RISPMKVPSPESVAERRLSRLGEQIQETINGDLDFMKNAVAELCQQLEVDTDLLAAALLQ 425

Query: 422 --------------------RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
                               R  R+   +       S    R+R     R+ +    S  
Sbjct: 426 QVQQERPLQLPTITERQRDSRDERSDRGSDRGDRNSSDRPRRERSDRGERSSRPAPNSFG 485

Query: 462 NFKG--------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + +G         + + + VG +       ++  +   + I+ + IG I++   +T V++
Sbjct: 486 DAEGLKDNPDVKMNRYVIDVGRENGVGVGNIVGAIANEANIDSRFIGQIQLFDQVTTVDL 545

Query: 514 ----SADGVDLLRRTVKLDKGIQLKYLGGEK-PDFRGYKSSGFKSKNSQDGATKRFKRFK 568
                 D +  LR+     + + ++  G E   D      +  + ++ +  + +      
Sbjct: 546 PDGMPKDILSHLRKVRVCGRPLNIREAGDEVFADTTRGAGAPRRPRSDRARSDRPRTDRP 605

Query: 569 GASK 572
              +
Sbjct: 606 AGDR 609


>gi|331006491|ref|ZP_08329791.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
 gi|330419691|gb|EGG94057.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC1989]
          Length = 573

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 149/564 (26%), Positives = 254/564 (45%), Gaps = 37/564 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I + L E GY   + +Q A +      +D+L  AQTG+GKT AF L L S +   
Sbjct: 16  NLPEAILKTLVELGYETPSPIQAASIPIIQEGRDLLGQAQTGTGKTAAFALPLLSKIDPT 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTRELA+QV    +         V    GG S   + R L+ G 
Sbjct: 76  K------KHPQLLVLAPTRELAIQVAEAFQTYSRHMSCTVLPIYGGQSYDNQLRQLKRGT 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +PK R++ +F
Sbjct: 130 QIIVGTPGRVMDHIRRKTLKLDQLEALVLDEADEMLRMGFIDDVEWILEHTPKSRQIALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  Y  +   + I ++    + I  R  +V  + + +A   IL      
Sbjct: 190 SATMPKEIKKVADKYLVNPKHIKIETKTSTATTIRQRFSIVNRNQKLDAFTRILEVEDFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+ +     + L+       AL+G++ Q +R N ++ ++ G   + IATDV A
Sbjct: 250 GVIVFVRTKVATLELAEKLSARGHSCAALNGDIPQNQRENIVEKLKRGTLDILIATDVVA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + R+ N 
Sbjct: 310 RGLDVKRISHVINYDIPLDTESYVHRIGRTGRAGRSGEAILFVTSRERHLLRAIERDTNS 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD--PEKIAAGFL 421
            V     PS   + ++ A+   +  +        G    +++  + ++D   E IAA   
Sbjct: 370 VVEPMDVPSASDVNQKRAEVFKKRINDAITQKDLGIYHDIINQTIQENDHPMESIAAALA 429

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF-----------------------KVGGG 458
            + +               SG    R                                  
Sbjct: 430 YLAQGSQPLFISEKDFQKNSGFSNERSQGNRRDGRNDRPRRDRNDRNDRKSNSDSPRRKK 489

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
              N    + + + +G +   +   ++  +   + ++ + IG+I++  + + V++  D  
Sbjct: 490 KEHNDANMNSYRIDIGREDGVKPGNIVGAIANEADMDSKFIGSIKISDNHSTVDLPKDMP 549

Query: 519 ----DLLRRTVKLDKGIQLKYLGG 538
                 L++     K   +K +  
Sbjct: 550 KAVFKKLQKAYICGKQTNMKPIDS 573


>gi|253681284|ref|ZP_04862082.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
 gi|253562522|gb|EES91973.1| cold-shock deAd box protein a [Clostridium botulinum D str. 1873]
          Length = 528

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 266/548 (48%), Gaps = 32/548 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FEDLPISDEIKRAIADMGFEAPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N       +   + + PTRELA+Q  +E+  L      +  +   GG  + R+ + 
Sbjct: 66  IDLDN------KSLQIMVLCPTRELAIQATQEVHKLGKYKKGINVLAVYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++GTPGR+ DHIR K L   ++K +VLDEADEMLD+GFRDDIE I+ + P+ R
Sbjct: 120 LKRGVQIIIGTPGRVIDHIRRKTLKTDNIKMIVLDEADEMLDMGFRDDIETIIQAIPQNR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT++ AI  L+K YQ +A  + +  +     +I+ R + V  +++   +  ++ 
Sbjct: 180 QTILFSATMAKAIIELSKKYQNNAEFIKVVHKQLTVPNIEQRYLEVKENNKLEVLSRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +A
Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSQLQARGYFAEGLHGDMKQPQRDRVMNKFRNGTIEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAIRKLRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KI 416
           R     V     PS   + E      L+        +G   K +D +    D +     I
Sbjct: 360 RYTKTKVKRAEIPSASDVEEFKVNAFLEKVKGTIE-EGHLGKYIDYIENLLDEDYATIDI 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L++        E +     +                 G      G     +++G  
Sbjct: 419 AAALLKMSLGEEKKEEILDINEEI-----------------GDTGAEPGMVRLFINIGRN 461

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            K +AR ++  +   +GI  + IG I +    TFVEV  +    +   +K +  I+ K +
Sbjct: 462 NKIQARDVIGAIAGETGIAGKVIGKIDIYDKFTFVEVPKENAREVLEIMK-NNTIKGKKI 520

Query: 537 GGEKPDFR 544
             E  + R
Sbjct: 521 NIEPANAR 528


>gi|21232073|ref|NP_637990.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21113816|gb|AAM41914.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 642

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 165/636 (25%), Positives = 280/636 (44%), Gaps = 74/636 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G + +M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIEMYRDLLQRYESENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             IAA   ++ +             A E+  P       DR        K   G R    
Sbjct: 422 IDIAAAMAKLLQGNAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPDG 481

Query: 465 ------------------------------------GSSWFSLSVGSKQKAEARWLMPML 488
                                               G   + + VG     +   ++  +
Sbjct: 482 ERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGAI 541

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG------ 538
              +G+  + IG I +Q D + +++ AD     +  L++     + + ++ L        
Sbjct: 542 ANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAAA 601

Query: 539 --EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              KP F        +     D A    ++     +
Sbjct: 602 AASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPR 637


>gi|66767801|ref|YP_242563.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188990915|ref|YP_001902925.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66573133|gb|AAY48543.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167732675|emb|CAP50869.1| Cold-shock DEAD-box protein A [Xanthomonas campestris pv.
           campestris]
          Length = 642

 Score =  308 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 165/636 (25%), Positives = 280/636 (44%), Gaps = 74/636 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G + +M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIEMYRDLLQRYESENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             IAA   ++ +             A E+  P       DR        K   G R    
Sbjct: 422 IDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPDG 481

Query: 465 ------------------------------------GSSWFSLSVGSKQKAEARWLMPML 488
                                               G   + + VG     +   ++  +
Sbjct: 482 ERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGAI 541

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG------ 538
              +G+  + IG I +Q D + +++ AD     +  L++     + + ++ L        
Sbjct: 542 ANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAAA 601

Query: 539 --EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              KP F        +     D A    ++     +
Sbjct: 602 AASKPKFPRGPRPAGRPNRPMDRAGAPHRKGPPKPR 637


>gi|289663283|ref|ZP_06484864.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 640

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 171/637 (26%), Positives = 286/637 (44%), Gaps = 75/637 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSGAVMKAVTNVGYESPSPIQAATIPALLSGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQLK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +S+ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITESLAGGQIDMYRDLLQRYETENNVPA 421

Query: 415 -KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------ 464
             IAA   ++ +     L  P         + R+R     R  +   G R  F+      
Sbjct: 422 IDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPRERNERADRGDRNDRGERPRFEPKFERG 481

Query: 465 -----------------------------------GSSWFSLSVGSKQKAEARWLMPMLC 489
                                              G   + + VG     +   ++  + 
Sbjct: 482 PRADGERAGRPPRGDDAGGERPRRDPVAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIA 541

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG------- 538
             +G+  + IG I +Q D + +++ AD     +  L++     + + ++ L         
Sbjct: 542 NEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASP 601

Query: 539 EKPDF-RGYKSSGFK--SKNSQDGATKRFKRFKGASK 572
            KP F RG K SG         D A    ++     +
Sbjct: 602 SKPRFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPR 638


>gi|56461091|ref|YP_156372.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56180101|gb|AAV82823.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 594

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 167/586 (28%), Positives = 274/586 (46%), Gaps = 33/586 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L+   ++  T +Q   +   L  +DVL  AQTG+GKT AFGL   + +    
Sbjct: 15  LPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLGEAQTGTGKTAAFGLPALAKID--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       L + PTRELA+QV   LE +     GV VA   GG     + + L+ G 
Sbjct: 72  ---ASVKQTQVLVVTPTRELAIQVAEALEGFAAKMRGVGVATVYGGAPFGPQVKALKQGT 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +    L +  LK  VLDEADEML++GF +DIE IL + P   +  +F
Sbjct: 129 AIVVGTPGRLIDLLNKNVLQLDGLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK + KD + + I +  R+ + I  +A  V    +  A+  +L     +
Sbjct: 189 SATMPNAIRKLAKTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPYQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  TR       ++L  + F+   LSG+L+Q +R   +  +R G   + + TDV A
Sbjct: 249 RALIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEILVGTDVVA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P++  VI+ +L S+ E+ +HR GRTGRAGR G ++       +       R  N 
Sbjct: 309 RGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILFFRAKERHLLRHYERLTNA 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQD------PLFLDSIQGDEKKMVDVLLA--KHDPEKIA 417
            V +   P+   + +   Q++L+       P    + +   +K++   L   +   E+IA
Sbjct: 369 PVEFFEVPNANELSKYRQQQLLEKLQASLAPETASADKPKLEKLLGEWLEQSELSAEEIA 428

Query: 418 AGFLRIH--------RAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSS 467
              L  H        +      E     S  SGR+    R D R  +   G R       
Sbjct: 429 LALLAQHNEQRPLFLKEDRPVREARNERSERSGRNERSDRGDKRKPRAERGGRAADVDFE 488

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRR 523
            + + VG +  A    ++  +   + ++ + IG I++  + + V++      D + +L++
Sbjct: 489 TYKIQVGREHGARPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDIMHVLKK 548

Query: 524 TVKLDKGIQLKYLGGEKPD----FRGYKSSGFKSKNSQDGATKRFK 565
                + + L+    +        R   + G   +NS  GA +RF 
Sbjct: 549 ARVRQQPMGLELSDEQVKRAPRPPRDRDARGGPKRNSGKGAARRFS 594


>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
 gi|158447119|gb|EDP24114.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
          Length = 580

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 144/518 (27%), Positives = 255/518 (49%), Gaps = 11/518 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ E G+   + +Q+  +   L  +D++  AQTG+GKT +FG+ +   +   
Sbjct: 9   NLSKEVLKAVVEMGFEEPSPIQKQAIPTMLNNEDIIGQAQTGTGKTASFGIPIVEKVNKN 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +    A+ + PTREL++QV  E+  L    GV V    GG  + R+ R L+ G 
Sbjct: 69  ------SKTTQAMVLCPTRELSIQVAEEISKLAKYKGVTVVPIYGGQPIERQIRSLKMGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DHI+ K L   ++K  VLDEADEM D+GFR+DIE I+   P +R+   F
Sbjct: 123 QVIVGTPGRVIDHIKRKTLKTENIKTFVLDEADEMFDMGFREDIEKIIGFLPYERQTTFF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +   A  YQ +   + +  +      +      +  + +   +  IL     K
Sbjct: 183 SATMDHEMMDFAARYQSEPRLIKVVPKELTVPKVTQYYFALKHNMKLEILSRILDVQNPK 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC+T+  V   T  L    +    L G+L Q +R   +   R+    + +ATDVAA
Sbjct: 243 LTVVFCNTKKMVDDLTAGLQSRGYFADGLHGDLKQIQRDGVMNKFRNSTIDILVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D++LVI+ ++  + E  +HR GRT RAGR+G ++  +         ++ +    
Sbjct: 303 RGIDVDDVDLVINYDMPQDVEYYVHRIGRTARAGREGTAISFVSPREMNTLSQIQKYTKT 362

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFLR 422
            +     P+++ + +R  +R ++D     +     K++  + +     + P  IAA  L+
Sbjct: 363 KIEKRDMPTLKDLIKRHEERFMEDIKEEINKNEHTKELNLINILMSEDYSPIDIAACLLK 422

Query: 423 IH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            +     L   EE+  V +   + +  D +     GG S    K S    +++GS++   
Sbjct: 423 HYNENNKLNNHEELIDVDIKKNKKKGNDKTSISNKGGKSNVTEKNSGRIYINIGSRKGVS 482

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            R ++  LC  + I+ + IG I +    +FV +  + +
Sbjct: 483 QRHIVSALCNDANISARDIGDIEIFEKFSFVNIHKNAL 520


>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
 gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
          Length = 607

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 167/603 (27%), Positives = 282/603 (46%), Gaps = 39/603 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A++E G+VN + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILDAVNEIGFVNPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E       GV V    GG     + R
Sbjct: 67  QIDPTQH------HPQMLVMAPTRELAIQVADACEQFTKNMKGVRVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + KD   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMKDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDMTQQAREQTLAKLKSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E + E+  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 EHLMKKPIDEVAIPNHEILMEKRREKFKARVSAQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGL-----CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWF 469
           AA  + + +          PE          RDR        +  GG      G     +
Sbjct: 421 AAAMMMMLQEKQKLILPPDPEIRAARGERGRRDRDERRGGRDERRGGREHRENGVAMDLY 480

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRT 524
            + +G +   E R ++  +     I+ + IG I++    + +E+     + +     ++ 
Sbjct: 481 RIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQKA 540

Query: 525 VKLDKGIQLKYLG-----GEKP----------DFRGYKSSGFKSKNSQDGATKRFKRFKG 569
             L+K +Q+  LG       +P            R  +       N +     + KRF  
Sbjct: 541 RVLNKQMQMSLLGPTGGVNSQPFEERRGGGRRSDRNDRRGDRGGLNDRKKGGFKEKRFND 600

Query: 570 ASK 572
             +
Sbjct: 601 RGR 603


>gi|114799571|ref|YP_759282.1| DEAD-box ATP dependent DNA helicase [Hyphomonas neptunium ATCC
           15444]
 gi|114739745|gb|ABI77870.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Hyphomonas
           neptunium ATCC 15444]
          Length = 708

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 270/612 (44%), Positives = 364/612 (59%), Gaps = 42/612 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + E +P  +  A+ ERGY  LT VQ A   P+L  +D+LVSA+TGSGKTVAFGLA+A+
Sbjct: 1   MNLPETLPAALRAAIHERGYETLTEVQAAATAPELEGRDLLVSARTGSGKTVAFGLAIAN 60

Query: 61  TLLAENDRF-SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL   D F   A+ PL L IAPTRELA+QV REL WLYA T   +A C+GG+ +  ERR
Sbjct: 61  ELLGGEDTFLIRAATPLGLIIAPTRELALQVARELRWLYANTNAEIATCVGGMDMRDERR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL DHI     + S ++AVVLDEADEMLDLGFR+++E IL+ +PK+
Sbjct: 121 ALERGAHIVVGTPGRLVDHINRGSFDTSAIRAVVLDEADEMLDLGFREELELILEDTPKE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR LMFSAT+   I  LA  YQK+ +R+   S+   H+DI Y A++VA  D +NAIVNI+
Sbjct: 181 RRTLMFSATVPKGIAALATRYQKNGLRITTDSDTTAHADIAYEALVVAPGDEENAIVNIV 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+   ++AIVFCSTRASV+     L    F VVALSGE SQ+ER+NAL  +R GRARVCI
Sbjct: 241 RHSDTESAIVFCSTRASVNHLVARLGNRGFSVVALSGEFSQKERANALSSLRSGRARVCI 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+DLP L+LVIHA+L  +P  LLHRSGRTGRAGRKG+S  ++    +RR ERL
Sbjct: 301 ATDVAARGLDLPKLDLVIHADLPRDPATLLHRSGRTGRAGRKGISTLIVAPKARRRVERL 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            ++A V   W   PS + +  RD  R+L D    + +   E  +V  L+A+H PE+IA  
Sbjct: 361 LQDAKVEARWGRPPSADEVINRDDTRLLADTALTNPMADKEADLVARLMAEHTPEQIATA 420

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDS-------------------------RAFK 454
           F+R  RAG  APE++  V       + R++                          R  +
Sbjct: 421 FIRKARAGRTAPEDLRDVDDRPPARKPREERGDRGDWQDRPQRAERAPREPREWGEREPR 480

Query: 455 VGGGSRDNFK-----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
                R   +     G+ W +++VG K+ A+ +WL+PMLC++  I+R  IG IR+    T
Sbjct: 481 EPRAPRPQRERASLDGAVWIAINVGRKKNADPKWLLPMLCKAGDIDRDQIGQIRINNGNT 540

Query: 510 FVEVSADGVDLLRRTVKLDK-----------GIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
            VE++ +G   L       +           GI  +   G  P     +     + +  +
Sbjct: 541 HVELTPEGAQRLFENAVNGRLEGSLQAFPLEGIPEREDPGAPPPRERDRRPDRPAASRPE 600

Query: 559 GATKRFKRFKGA 570
            + +R   +  A
Sbjct: 601 RSFERKPDWNPA 612


>gi|220933289|ref|YP_002512188.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994599|gb|ACL71201.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 602

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 150/594 (25%), Positives = 259/594 (43%), Gaps = 36/594 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL++ GY   T +Q   + P L  +D+L  AQTG+GKT AF L   S L  ++
Sbjct: 16  LNPAVLKALTDTGYEAPTPIQAEGIPPLLAGRDLLGQAQTGTGKTAAFALPALSRLDLKD 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           +R         L +APTRELA+QV    +           +   GG     + + L  GA
Sbjct: 76  NR------TQVLVLAPTRELAIQVAEAFQTYARHLPGFHVLPIYGGQPYGIQLKQLSRGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L +  L+ +VLDEADEML +GF DD+E+IL+ +P  R++ +F
Sbjct: 130 QVVVGTPGRVMDHMRRGTLKLDALRTLVLDEADEMLRMGFIDDVEWILEQTPASRQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + K+   V I S     + I  R   V+   + +A+  +L      
Sbjct: 190 SATMPEVIRRVAHTHLKEPAEVRIRSATTTATTIRQRYWRVSGLHKLDALTRLLETEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       + L        AL+G++ Q +R   ++ ++ G+  + +ATDV A
Sbjct: 250 AMLIFVRTKTETVELAERLTARGHACEALNGDIPQNQRERVVERLKKGQLDILVATDVVA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    QR  + + R    
Sbjct: 310 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRTGEAILFVAPREQRMLKAIERATRQ 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     P+   +  +   R  +     +++  D+ +    L+  +  E      +IAA 
Sbjct: 370 PIEPMHMPTAGDVNAQRIARFKER--INEALGSDDLEPFLELVTDYQQETGAEPLEIAAA 427

Query: 420 FLRIHRAGLC-------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG------- 465
             R+ +            P           RD  R +    +  G   +           
Sbjct: 428 LARLAQGKEPLLLDERAPPPPRAEFMPRPERDTGRAEKPRPRKSGAHSEAPLPLKGQPDV 487

Query: 466 -SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDL 520
               F + VG     +   L+  +   +G++ Q IG I +  + T V++ AD     +  
Sbjct: 488 AMERFVVDVGHAHGLKPGNLVGAIANEAGLDSQYIGHIDIGDETTTVDLPADMPRPLLKH 547

Query: 521 LRRTVKLDKGIQLKYLGGEKP--DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           L+      + + L+  G   P    +       +   S        K      K
Sbjct: 548 LQGVWVCGRKLGLRPFGEPSPAQAHKRGPKGPRRPAGSAARKPAPRKTLSKPRK 601


>gi|311743209|ref|ZP_07717016.1| DeaD protein [Aeromicrobium marinum DSM 15272]
 gi|311313277|gb|EFQ83187.1| DeaD protein [Aeromicrobium marinum DSM 15272]
          Length = 567

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 166/562 (29%), Positives = 265/562 (47%), Gaps = 23/562 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L+  GY   T +Q   + P L  +DV+  AQTG+GKT AF L +   L  + 
Sbjct: 13  LGDALVAVLAGLGYETPTPIQAQAIGPLLDGRDVVGLAQTGTGKTAAFALPILERLDPDR 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+QV        A+T G+ +    GG     + R LQ GA
Sbjct: 73  AE------TQALILAPTRELALQVSDAFATYAARTPGLRILPVYGGQGYAAQLRGLQRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +S L  +VLDEADEML +GF +D+E IL  +P+ +++ +F
Sbjct: 127 HVVVGTPGRVIDHLDRGSLELSGLDHLVLDEADEMLTMGFAEDVERILADTPEDKQVALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  LAK Y  D V V   +  R  + +  R + V    + +A+  +L      
Sbjct: 187 SATMPPAIRRLAKKYLNDPVDVATPAATRSTTTVRQRWISVPHHGKFDALTRLLEVENGD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L    F   AL+G+L Q +R   +  ++ G   + +ATDVAA
Sbjct: 247 GMIIFVRTKQATEELAEKLRSRGFDAAALNGDLVQAQRERIVGQLKGGSLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G +V  +    +R    + + +  
Sbjct: 307 RGLDVDRITHVINHDIPHDAESYVHRIGRTGRAGRSGEAVLFVTPRERRMLSAIEKVSGR 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAAG 419
            V     PS E +  + ++R        +S+   +      L+ ++      D   +AA 
Sbjct: 367 PVEEMSVPSAEEVNTQRSERFAA--AITESLGSPQFHPFRRLVEEYAAAHEVDMTDVAAA 424

Query: 420 FLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKV--GGGSRDNFKGSSWFSLSVGSK 476
              ++            PV     R+R   D R  +       ++  +G   + L+VG +
Sbjct: 425 LAVMNTDDKEFFLRPDPPVKERPKRERTERDDRPRRDVQEQAGQEAPEGWRRYRLAVGKR 484

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQ 532
            +     ++  +    G+ R   G I +  +   VE+ AD      D L  T    K I 
Sbjct: 485 HRIGPSAIVGAMANEGGLRRTDFGKITIGVEHAVVELPADLPDAVFDALADTRISGKRID 544

Query: 533 LKYLGGEKPDF-RGYKSSGFKS 553
           L+   G  P   RG +S G++ 
Sbjct: 545 LRVDDGPPPARQRGPRSGGYQG 566


>gi|297571406|ref|YP_003697180.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931753|gb|ADH92561.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 620

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 152/598 (25%), Positives = 270/598 (45%), Gaps = 33/598 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F   N+P+ I  A+++ G+ + T++QE  +   L  +DVL  AQTG+GKT AF L + 
Sbjct: 5   TTFADLNLPETILSAVTDLGFTSPTAIQEQAIPLLLEGRDVLGVAQTGTGKTAAFALPML 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + +   N          AL +APTRELA+Q    +    A+TG +  V   GG +   + 
Sbjct: 65  AHVDPNN------RHVQALVLAPTRELALQGAEAINTFAARTGGLDVVAVYGGSAYGPQL 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA +VVGTPGR+ D I    L++S ++  VLDEADEML +GF +D+E I    P+
Sbjct: 119 GALRDGAQVVVGTPGRVMDMIDRGALDLSTIRYFVLDEADEMLRMGFAEDVEKIATGLPE 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   +FSAT+   I  +A+ +  +   V ++S +     I     +V    +  A+  +
Sbjct: 179 ERISALFSATMPKQIRMVAETHLNNPAEVQVSSPSSTVDTITQTYAVVPTRHKIGALARV 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    A  A+VF  TRA+       L+    Q  ALSG+++Q++R   +  +R G   V 
Sbjct: 239 LATTEADAALVFVRTRATAEDLAIELSTRGVQAAALSGDVAQKDREKLVDRLRQGSIDVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR+G ++  +    ++R  R
Sbjct: 299 VATDVAARGLDVERIGLVVNFDIPREVETYVHRIGRTGRAGREGTALSFVTPKEKQRLRR 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--------------DPLFLDSIQGDEKKMV 404
           + +     +     P+   +    A+++L               D L  + I   E    
Sbjct: 359 IEKVTRTQMTQVELPTPAEVSGLRARKLLAEAVERHAVGRLHVYDDLIAEFIAAQEDAQN 418

Query: 405 DVLLAKHDPEKIAAGFLRI-----HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
           D  +       + +  L +            PE++T         R +   R  + G   
Sbjct: 419 D-GMELLSLADLVSALLALGVRDPGPQATDEPEKLTVGFTADDDRREKRGRREDRGGQRR 477

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSA 515
               +  + + + VG +       ++  +    G+    +G I + P  + +    E+  
Sbjct: 478 GGFDEPGTTYRVEVGRRDGVAPGAIVGAMTNEGGLRGSQLGKIDIFPSFSLIHVNDELDQ 537

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             +  + +     + + +    G +   R  ++    S   +  A ++F   +   + 
Sbjct: 538 ATLRRIAKARVSGRTLDITKDNGPRGGRRPSEAHADDSGLRKYRADRKFGEERAQRRQ 595


>gi|308178183|ref|YP_003917589.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745646|emb|CBT76618.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 642

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 156/555 (28%), Positives = 271/555 (48%), Gaps = 16/555 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  +L++ GY   + +Q A +   L  +DV+  AQTG+GKT AF L   S +    
Sbjct: 27  LDARVLASLADLGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPALSRMAELA 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D   PA  P  L +APTRELA+QV                +   GG     +   L+ GA
Sbjct: 87  DTNGPAKTPQILVLAPTRELALQVAEAFTSYAKYLPNFTVLPVYGGSPYGPQLNGLRRGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI    L++S+L+ VVLDEADEML +GF ++++ IL+++P+ +++ +F
Sbjct: 147 QVVVGTPGRVIDHINKGSLDLSNLQYVVLDEADEMLRMGFAEEVDKILEATPEDKQVALF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  Y ++   V + S+    ++I  R + V  + + +A+  IL     +
Sbjct: 207 SATMPRTIRRIASEYLRNPQEVAVKSKQSTGTNITQRYLQVMGAHKLDAMTRILESETFE 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    F   A++G++ QQ+R   ++ +R G+  + +ATDVAA
Sbjct: 267 GVIAFVRTKMATEDLADKLKARGFTAAAINGDIPQQQRERTIENLRSGKIDILVATDVAA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +     + +    
Sbjct: 327 RGLDVERISHVVNFDIPHDTESYVHRIGRTGRAGRKGDAILFMTPREKYLLRAIEKATRQ 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKH---DPEKIAAGF 420
            V     PS++++ +R  Q+     D           +++V+   ++H   D  +IAA  
Sbjct: 387 PVTQMQLPSLDSVNDRRIQKFTDRIDKTISGQDLTTFREIVEKFASEHEDLDQLEIAAAL 446

Query: 421 LRIHRAG--LCAPEEITPVSLVSGRD----RFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
             + + G  L   E +   S  +  D          R  +     +   +G++ + L+VG
Sbjct: 447 ALMAQGGRPLLMTEPVMSPSKKARMDRPERGGERGERGDRGPRARKTAAEGNAMYRLAVG 506

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKG 530
            + + +   ++  L    G N   IG I ++ D T VE+ A    D    L +T    + 
Sbjct: 507 RRNRVQPGSIVGALANEGGFNSSEIGGIEIRSDHTLVELPAELTKDQWRALSKTRIGGEA 566

Query: 531 IQLKYLGGEKPDFRG 545
           I+L+   G  P    
Sbjct: 567 IELELDNGRSPRRED 581


>gi|38233613|ref|NP_939380.1| DEAD-box helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199873|emb|CAE49539.1| DEAD-box helicase [Corynebacterium diphtheriae]
          Length = 680

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 160/564 (28%), Positives = 280/564 (49%), Gaps = 32/564 (5%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +P  I +A+++ G+   + +Q   +   ++  DV+  AQTG+GKT AF L + S 
Sbjct: 69  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVMGLAQTGTGKTAAFALPILSR 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +         P AL +APTRELA+QV    +      G +  +   GG +   +   
Sbjct: 129 IDVKK------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSG 182

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +
Sbjct: 183 LRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDK 242

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+   I  L+++Y KD   + + S+ R +++I  R + VA  ++ +A+  IL 
Sbjct: 243 QVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNVAHRNKLDALTRILE 302

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +A
Sbjct: 303 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 362

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + 
Sbjct: 363 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 422

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--E 414
           R  N  ++    P+V+ + E    +        +S++ D+    + ++     +HD   E
Sbjct: 423 RATNAKLIEMDLPTVDEVNESRKAKFADS--ITESLEDDQVAIFRSLIKSYAEEHDVPLE 480

Query: 415 KIAAGFLRIHRAGLCAPEEITPVS-----------LVSGRDRFRDDSRAFKVGGGSRDNF 463
            IAA      RAG     +  P                     RDD R  +  G   +  
Sbjct: 481 DIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRRGGRDRGSRFERN 540

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VD 519
                + L+VG +Q      ++  L    G++ +  G I +  D T VE+  +     +D
Sbjct: 541 DDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLVELPKNMDPSVID 600

Query: 520 LLRRTVKLDKGIQLKYLGGEKPDF 543
            L  T    + I ++   G  P  
Sbjct: 601 RLSDTRISGQLIHIEKDNGRPPRR 624


>gi|88704236|ref|ZP_01101950.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
 gi|88701287|gb|EAQ98392.1| ATP-dependent RNA helicase DEAD/DEAH box [Congregibacter litoralis
           KT71]
          Length = 604

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 153/596 (25%), Positives = 275/596 (46%), Gaps = 47/596 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +ALS+ GY   +++Q   + P L  KD++  AQTG+GKT AF L + + L A+ 
Sbjct: 15  LPVFLMKALSDVGYETPSAIQTMTIPPLLEGKDLVGQAQTGTGKTAAFALPILARLDAKL 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    +     + G  V    GG     + R LQ G 
Sbjct: 75  AK------PQALVLAPTRELAIQVAEAFQKYARHSKGFKVLPIYGGSDYRTQLRQLQRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R   L++S LK +VLDEADEML +GF DD+E+IL+ +P +R++ +F
Sbjct: 129 HVIVGTPGRVMDHMRRGSLDLSALKTLVLDEADEMLRMGFIDDVEWILEQTPPERQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ +      + I  +   ++ I  R  ++    + +A+  IL      
Sbjct: 189 SATMPDAIRRIAQQHLSKPEEITIKLKTVTNASIRQRVWMMGGMHKLDALTRILETEDTD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR +       LA   +   AL+G++ Q  R   ++ ++ G   + +ATDVAA
Sbjct: 249 GIIIFVRTRIATQELADKLAARGYGTAALNGDIPQNLREKTVENLKKGALDILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++PE  +HR GRTGRAGR G ++       +R    + R    
Sbjct: 309 RGLDVERISHVINYDIPNDPEAYVHRIGRTGRAGRTGEAILFAANRERRLLRTIERVTGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     P+ E + ++ A R        +++   +++    L+  +  E       IAA 
Sbjct: 369 KIESMELPTSEQVSDKRAARF--KARITETLDTQDRESARALVESYQQEFGVPIIDIAAA 426

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK--------------- 464
            + +++    A     P      R      ++  +     +   +               
Sbjct: 427 LVVMNQGKAPATPAPEPSRQFKERPPREGRTQERRKDNAKQRPEEKGHKPRRDKDSGGKG 486

Query: 465 ---GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DG 517
              G   + + VG +   +   ++  +   + ++ + IG I+++ D +FV++      + 
Sbjct: 487 ADVGMERYRVEVGHQHGVKPGNIVGAIANEAEVDAEYIGRIQIEDDHSFVDLPEGMPKEI 546

Query: 518 VDLLRRTVKLDKGIQLKYLG----------GEKPDFRGYKSSGFKSKNSQDGATKR 563
              L+      + +++   G                +  + SG K K  +      
Sbjct: 547 FKHLQSVWVSGQKLRISRPGAKAKKSAKAAAPADGVKAVEESGAKKKGPRKRKAPP 602


>gi|258543522|ref|YP_003188955.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634600|dbj|BAI00576.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637656|dbj|BAI03625.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640710|dbj|BAI06672.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643765|dbj|BAI09720.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646820|dbj|BAI12768.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649873|dbj|BAI15814.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652863|dbj|BAI18797.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655917|dbj|BAI21844.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 586

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 258/555 (46%), Positives = 339/555 (61%), Gaps = 3/555 (0%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   T+VQ A+L  D + +D+LVSA+TGSGKTVAFGL LA  LL +  R  P+ AP+AL
Sbjct: 18  GFTAPTAVQAAVLADDAKNRDLLVSARTGSGKTVAFGLTLADLLLNDAGRCVPSGAPIAL 77

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+QV  ELEWLYA+TG  +  C+GG+   +E R L +G HIVVGTPGRLCDH
Sbjct: 78  VIAPTRELALQVRSELEWLYAETGARIVSCVGGMEPRKEARALASGCHIVVGTPGRLCDH 137

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +R   L++SHLKAVVLDEADEMLDLGFRD++E +LD+ PK+RR L+FSATI+  I  LA+
Sbjct: 138 LRRGALDLSHLKAVVLDEADEMLDLGFRDELETLLDAMPKERRTLLFSATIARDIAALAR 197

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            YQ+DA+R++    N  H+DI YRAVL    D    +VN+LR   +  AIVFC TR +V 
Sbjct: 198 RYQQDALRIDTVGTNTPHADITYRAVLTEQGDMAGTVVNVLRLMESSAAIVFCHTREAVR 257

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +   +L E  F  VA+SG+L Q ERS A++ +R G+ARVC+ATDVAARGID+PDL LVIH
Sbjct: 258 QLQAILTERGFSSVAISGDLGQNERSRAIESLRHGQARVCVATDVAARGIDIPDLGLVIH 317

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           A L SNP  LLHRSGRTGRAG+KG  V ++P   +R AERL + A V+  W  AP+  AI
Sbjct: 318 ASLPSNPATLLHRSGRTGRAGKKGTCVLLVPPARRRLAERLLQAAKVTAEWSGAPTPAAI 377

Query: 379 RERDAQRILQDPLFLDSIQGDEKKM--VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP 436
              DA+R+L  P        D +    +  L+A+H PE++AA  + +    L AP  +  
Sbjct: 378 ATADAERLLGAPFLSAPAPEDAETQTLIGRLVAEHTPEQLAAALVGLWHKSLPAPVSVRV 437

Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496
           ++  + R     D               G  WF LSVG + +A+ +WL+PMLCR   I +
Sbjct: 438 ITPDARRAPRERDPNRPVRERERAPAMDGK-WFRLSVGREDRADPKWLVPMLCRLGNIKK 496

Query: 497 QSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
           Q IG+IR+  D T VE+S D  +            ++       P   G    G      
Sbjct: 497 QDIGSIRITQDHTLVEISPDKAEQFASCASATDPDEITVEPAAAPRKGGGGGGGGPRPAY 556

Query: 557 QDGATKRFKRFKGAS 571
            D   K  + F    
Sbjct: 557 ADRKPKGGRSFAPRR 571


>gi|271961946|ref|YP_003336142.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505121|gb|ACZ83399.1| ATP-independent RNA helicase [Streptosporangium roseum DSM 43021]
          Length = 561

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 163/553 (29%), Positives = 264/553 (47%), Gaps = 24/553 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L +   +  + 
Sbjct: 17  LRPELLHALSGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPVLQRMTRDG 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQV         + G  V    GG  + R+ R LQ G  
Sbjct: 77  G----GGEPMALVLVPTRELAVQVSEAFHHYGRELGARVLPIYGGQPIGRQLRALQQGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR  DHI    L +  L+ VVLDEADEMLD+GF +DIE IL  +P+ R+ ++FS
Sbjct: 133 IVVATPGRALDHIGRGTLRLDDLEMVVLDEADEMLDMGFAEDIEAILQETPENRQTVLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P I  +A+ +  D VR+ +  E         +   A +V  + +  A+  +L    
Sbjct: 193 ATMPPRINGIARRHLNDPVRIEMGRETTAPGEAPLVRQTAYVVPRAHKPAALGRVLDVEA 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC TR  V + T+ L    ++  AL G + Q++R   +  +R G A + +ATDV
Sbjct: 253 PTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMGQEQRDRVMGRLRTGTADLLVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 313 AARGLDIEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 372

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAG 419
              +  E  P++  +R R  +  L      +S+  D+ +   V++     + D  ++A  
Sbjct: 373 KRRIPIEKVPTIADLRARRLE--LTRAALHESLLEDDLERFRVVVETLTDEFDIMEVALA 430

Query: 420 FLRIHRAGLCAPEEITPVSLVS-----GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            +++      A ++   +  V+          R+ +   +  G       G +   +  G
Sbjct: 431 AVKLAHEASGAADDEQEIPEVALRTEREERGRREPAGRQERRGRPAAGGSGMTRLFVGAG 490

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
                  + L+  +   S +  + IGAI +    + VEV     D +   +   +G  +K
Sbjct: 491 RSSGIRPQDLVGAIAGESRLTGRDIGAIEIADRFSLVEVPDAAADEVIAVL---RGSTIK 547

Query: 535 YLGGEKPDFRGYK 547
              G+K   R  +
Sbjct: 548 ---GKKATVRRER 557


>gi|33863354|ref|NP_894914.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640803|emb|CAE21258.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 635

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 152/546 (27%), Positives = 254/546 (46%), Gaps = 23/546 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+E+GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L    
Sbjct: 90  FSEPLLKTLAEKGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHDHG 149

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R      P  L +APTRELA+QV             +  +   GG     +   L+ G 
Sbjct: 150 SR------PQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLKRGV 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+R   L+ S L+ +VLDEADEML +GF DD+E+IL+  P++R+M++F
Sbjct: 204 DVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWILEQLPEERQMVLF 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   + I S +++   I  R + +  S +  A+  +L     +
Sbjct: 264 SATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQRCITLQNSHKLEALRRVLEAFTGE 323

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L      V  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 324 GVIIFARTKVITLTVAEALEAAGHDVAVLNGDVPQNQRERTVERLRKGSVNILVATDVAA 383

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R      R    
Sbjct: 384 RGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGFERAVGQ 443

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KHDPEKI 416
            +     P+  AI +    R+ Q        + D  +   +L              PE++
Sbjct: 444 PIEPMDIPNNAAINQSRLDRLRQRLTTAAKTERDNSEETALLQELIQRVVQELSLSPEQL 503

Query: 417 AAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDSR---AFKVGGGSRDNFKGSSWF 469
           A   L          + A E     S    R   R +SR     +    SR        F
Sbjct: 504 ALAALEFAVGPGPILVQADEGWLQQSTQRNRRNDRHESRGGSGRRPERSSRPPEDHMERF 563

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            + VG + + +   L+  +   SG+  + IG I++    + V++     + + + +K  K
Sbjct: 564 RVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIFESHSLVDLPKGMPEDVFKDLKRLK 623

Query: 530 GIQLKY 535
            +  + 
Sbjct: 624 VMNREL 629


>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
 gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
          Length = 547

 Score =  306 bits (784), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 164/555 (29%), Positives = 269/555 (48%), Gaps = 20/555 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + I  A+++ GY   + +Q   +   L   DV+  AQTG+GKT AF + L
Sbjct: 3   ITNFNELAVKEEITRAIADLGYEQPSPIQAKAIPVVLEGYDVIGQAQTGTGKTAAFSIPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              +   + R        A+ + PTRELA+QV  E+  L     GV      GG  + R+
Sbjct: 63  LEKIDPSDKR------LQAIVLCPTRELAIQVSEEVRKLAKYLHGVKTLPIYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  +++GTPGR+ DHI  K L  S +K VV+DEADEMLD+GFR+DIE IL S+P
Sbjct: 117 IKALKGGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEMLDMGFREDIETILSSTP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT+  AI  L + YQK+ V + +  +    ++I    +    S++   +  
Sbjct: 177 QERQTSLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNKLEVLTR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K  +VF +T+         L    +   +L G+L Q +R   +   R G   +
Sbjct: 237 LIDVYNPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDLKQVQRDIVMDKFRHGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E VI+ EL  + E  +HR GRTGRAGR G++   +     R+ +
Sbjct: 297 LVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGIAFSFVFGREMRKLK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE- 414
            + R     V+    P+V  + ++   +   D      +     + + V+  L + D   
Sbjct: 357 DIERYTKSKVMKHSIPTVNDVEQKKIGQFFSDIKETLEEGNFSKQLQWVEDFLNEEDYSL 416

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             I A  L+         E        S R++           GG R N +  +   L+V
Sbjct: 417 IDICAAMLKNSLGADEKEEIKEESYYDSRRNKNGGR------NGGPRRNDENMTRLFLNV 470

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G  QK +A+ ++  +   +GIN + IG I +    TFV+V  +   ++   +K  K I+ 
Sbjct: 471 GRNQKIQAKDILGAIAGETGINSKYIGTIDIYDKYTFVDVDQNKAKMVIEKMKSRK-IRG 529

Query: 534 KYLGGEKPDFRGYKS 548
             L  E+ +    + 
Sbjct: 530 NKLNIERANVNKRRR 544


>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 591

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 167/579 (28%), Positives = 263/579 (45%), Gaps = 20/579 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL + GY   T VQ   +   L+  DVL  AQTG+GKT AF L L ST+   N
Sbjct: 19  LSGQVLDALEKVGYETPTPVQLQTIPIILKGSDVLGQAQTGTGKTAAFALPLLSTIDLSN 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P  L + PTRELA+QV    +   A       +   GG     + R L+ G 
Sbjct: 79  A------SPQVLVLTPTRELALQVAEAFQRYAACMEDFHVLPIYGGQDYSGQLRRLRRGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHIR + LN+  LK +VLDEADEML +GF DD+E+IL+ +P  R++ +F
Sbjct: 133 HVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEMLRMGFVDDVEWILEKTPATRQVALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + Y +D   V I S++        R + V+   + +A+  IL      
Sbjct: 193 SATMPSEIRRITRKYLRDFTEVAIKSKSSTVESTTQRFLPVSGHHKLDALTRILEIEHYD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+      ++ L    +   AL+G++ Q  R   +   +     + IATDVAA
Sbjct: 253 GVIIFVRTKTQTVELSEKLRARGYASAALNGDMMQNHREKTVGQFKKSVYNILIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++ E+ +HR GRTGRAGR G ++  +          + R    
Sbjct: 313 RGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVTPREMSMLRTIERAIRK 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     PS E I ++   R  Q      S       +++V+    +HD   + A     
Sbjct: 373 RIDRMELPSTEIINDKRVARYKQQISDTLSTADLHFFRELVESYCFEHDVTALDAAAALA 432

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---------GSSWFSLSVG 474
                 +P  +T      GR++     R     G S  +           G   + + VG
Sbjct: 433 SLYQGDSPLLLTKQMKPFGREQKERKGRQDHADGRSFKSKGKKDPLYEALGFERYRIEVG 492

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            K   +   +   +    G++  ++G I +  D + VE+ A     +   +K  +   LK
Sbjct: 493 EKHGVKPGNIAGAIINEIGLDGDAVGRITIFDDHSTVELPAGMPKDVFMDLKKVRVCGLK 552

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            L   K D        + +KNS+    K  KR  G  K 
Sbjct: 553 -LQASKADEGAGSPGKYSAKNSRK-TAKSSKRVPGGKKK 589


>gi|221234483|ref|YP_002516919.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
 gi|220963655|gb|ACL95011.1| DEAD-box RNA helicase-like protein [Caulobacter crescentus NA1000]
          Length = 741

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 266/575 (46%), Positives = 358/575 (62%), Gaps = 9/575 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
              +  AL+ +GY   T VQ A+L  D  ++D+LVSAQTGSGKTVAFGLA A TLL + +
Sbjct: 7   HPALERALAAQGYAEPTPVQAAVLAADAADRDLLVSAQTGSGKTVAFGLAAAPTLLGDAE 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            F  A+ PLAL IAPTRELA+QV REL WLYA+    V  C+GG+   RE+R L  GAHI
Sbjct: 67  TFGQAAEPLALVIAPTRELAMQVNRELGWLYAEAKAAVINCVGGMDARREQRALNYGAHI 126

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGRL DHI    L++S LK  VLDEADEMLD+GFR+D+EFILD++P +RR L+FSA
Sbjct: 127 VVGTPGRLRDHIERGHLDLSKLKVAVLDEADEMLDMGFREDLEFILDAAPAERRTLLFSA 186

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  I  LAK YQ DAVR++    N  H DI+YRAV VA ++ ++A+VN+LR+  A  A
Sbjct: 187 TLARDIVELAKRYQNDAVRIDTIGRNEPHRDIEYRAVRVAPNEVEHAVVNLLRFFEAPGA 246

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF +TR SV      L E  F VV LSGELSQ+ER++ALQ +RDG ARVC+ATDVAARG
Sbjct: 247 LVFANTRESVRSMHAKLRERGFAVVGLSGELSQRERADALQALRDGHARVCVATDVAARG 306

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +DLPDL LVIHAEL  N   LLHRSGRTGRAG+KG+S  V+P   +R+AE+L   A V  
Sbjct: 307 LDLPDLGLVIHAELPINKATLLHRSGRTGRAGKKGVSALVVPYTRRRKAEQLLYAAGVEA 366

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            W  APS ++IRE+D +R+L+DP+F ++   ++  + + +LAK  P +IAA  +R  RA 
Sbjct: 367 DWGGAPSADSIREKDQERLLEDPIFSEASTEEDVALAEAMLAKRTPVEIAAALIRTRRAK 426

Query: 428 LCAPEEITPVSL------VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           L +PE+I              R+         +     R + +GS WF +SVG +  A+ 
Sbjct: 427 LPSPEDIYDDPRHGADPGPRSREPREPREFGERPEREPRVSMEGSEWFRISVGRRGNADP 486

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           +WL+PM+CR   I ++ IGAIR+    T  E+S +        V+      +       P
Sbjct: 487 KWLIPMICRLGHITKKDIGAIRIFDYDTKFEISNEAAVKFGAAVQTTVREDVSITPTTAP 546

Query: 542 DFR---GYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             R     +    +     +   + +K      ++
Sbjct: 547 AAREAGPRRDFTPRPPRGDNDGPREYKPRPPRDRD 581


>gi|194365003|ref|YP_002027613.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347807|gb|ACF50930.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 646

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 159/589 (26%), Positives = 273/589 (46%), Gaps = 54/589 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  + 
Sbjct: 16  LSESVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQ 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    +       G  V    GG    ++   L+ G 
Sbjct: 76  IK------PQALVLAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P KR++ +F
Sbjct: 130 HIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPAKRQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL      
Sbjct: 190 SATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAA
Sbjct: 250 AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++       +    ++ R    
Sbjct: 310 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQ 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     PSVEA+ +    +        +++          LL + + E      ++AA 
Sbjct: 370 PIEEMQLPSVEAVNDNRINKFT--SRITETLGQGGLDFYRQLLERFETEQNVPAIEVAAA 427

Query: 420 FLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF------------- 463
             ++ +     L  P    P    + R+RF    R  +     R                
Sbjct: 428 LAKMMQGDTPFLLQPPVRAPREERAPRERFERTERPERGDRNERGPRFERGPRRDDAEGG 487

Query: 464 ----------------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
                           +G   + +SVG +   +   ++  +   +G+  + IG I +  D
Sbjct: 488 FEQRPRRDVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDIHDD 547

Query: 508 LTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGE---KPDFRGYKSS 549
            + +++ A    D +  L++     + +Q++ L       P  R +K  
Sbjct: 548 FSLLDLPAQMPSDVLTHLQKVWVSGQQLQMRPLAAGEEINPAPRPFKPR 596


>gi|255020706|ref|ZP_05292767.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
 gi|254969860|gb|EET27361.1| Cold-shock DEAD-box protein A [Acidithiobacillus caldus ATCC 51756]
          Length = 615

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 158/601 (26%), Positives = 279/601 (46%), Gaps = 42/601 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E GY   + +Q   + P L  +DV+  AQTG+GKT AF L L S +    
Sbjct: 17  LAEPLQRAVREIGYEQPSPIQAQSIPPLLAGRDVIGLAQTGTGKTAAFALPLLSRVDLS- 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV   ++           +   GG S+  + + LQ G 
Sbjct: 76  -----LRFPQILVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQSMGLQLKQLQRGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R + L +  L+AVVLDEADEML +GF D +E IL  +P +R++ +F
Sbjct: 131 QVVVGTPGRIQDHLRRETLKLDRLQAVVLDEADEMLRMGFIDAVEEILKHTPTQRQVALF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y +D + + I S     + I  R  LV+ + + +A+  IL    + 
Sbjct: 191 SATMPEAIRRIARTYLRDPLEIRIKSTTSTVAAIRQRYWLVSGTHKLDALTRILEVEDSN 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L    +   AL+G+++Q  R   ++ ++ G   + +ATDVAA
Sbjct: 251 AWIIFVRTKTATVELAERLEARGYACGALNGDMTQAMREQTIERVKSGSLDIVVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++ E  +HR GRTGRAGRKG ++  +    +   + + R    
Sbjct: 311 RGLDVERITHVINYDIPNDTEAYVHRIGRTGRAGRKGEAILFVAPRERYLLKAIERATGQ 370

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK------IAAG 419
            +     PS+E + +R   +  +       ++ ++      L+A++  E+      IAA 
Sbjct: 371 PIEPMHLPSLEDVADRRTSQFKEQ--LTTVLETEDLDRFASLVAEYQSEQEVSLERIAAA 428

Query: 420 FLRIHRAGLCAPEEITPVSL-----------VSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              + +       +  P                  +R     R     G +R +      
Sbjct: 429 LAFLAQRDRPLVPDAPPAVPSLDKAPGPRGARRLEERKERAPRERAAAGENRPDDTPMIL 488

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRT 524
           + L+VG    A+ + ++  +   SG+  + I  ++V  D + VE+ AD     ++ L++ 
Sbjct: 489 YRLAVGESHGAQVKNIVGAIANESGLPSRLIRKVQVHDDYSTVELPADLDRGILEHLQKV 548

Query: 525 VKLDKGIQLKYLG------------GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
               + +Q+  +G               P          +    +DG T   +  K + +
Sbjct: 549 WVAGRPLQIAVVGTAERARTSSTRRSVSPKADARPVLSVRKSTPEDGRTDGREVKKPSRR 608

Query: 573 N 573
            
Sbjct: 609 K 609


>gi|166711384|ref|ZP_02242591.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 634

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 173/631 (27%), Positives = 287/631 (45%), Gaps = 69/631 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSGAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD V V IA++    + I  R   V    + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPVEVTIAAKTTTSASIRQRYWWVNGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC--------------APEEITPVSLVSGRDRFR---------DDS 450
             IAA   ++ +                  AP E    +    R RF          D  
Sbjct: 422 IDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHERADRGDRPRFEPKFERGPRADGE 481

Query: 451 RAFKVGGGSRDNFK---------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
           RA +   G     +               G   + + VG     +   ++  +   +G+ 
Sbjct: 482 RAPRPPRGDDAGGERPRRDPVAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLE 541

Query: 496 RQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF- 543
            + IG I +Q D + +++ AD     +  L++     + + ++ L          KP F 
Sbjct: 542 SRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAALPAKPRFP 601

Query: 544 RGYKSSGFK--SKNSQDGATKRFKRFKGASK 572
           RG K SG         D A    ++     +
Sbjct: 602 RGGKPSGRPNGPLRPMDRAGAPHRKGPPKPR 632


>gi|238059366|ref|ZP_04604075.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
 gi|237881177|gb|EEP70005.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           sp. ATCC 39149]
          Length = 576

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 162/556 (29%), Positives = 265/556 (47%), Gaps = 24/556 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALS  GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    
Sbjct: 33  LRAELLGALSALGYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLHRM---- 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQV           G  V    GG  + R+ R L  G  
Sbjct: 89  PDGRAGGEPVALVLVPTRELAVQVSEAFHRYGKDLGARVLPIYGGQPIGRQLRALDLGVD 148

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  L  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FS
Sbjct: 149 VVVATPGRALDHIARGTLRLGGLATVVLDEADEMLDMGFAEDIEAILEHAPQQRQTVLFS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  +A+ +  D VR+ I  E +   +   +   A +VA + +  A+  +L    
Sbjct: 209 ATMPSRIDGMARQHLTDPVRIQIGREQQVAGETPRVRQSAYIVARAHKPAALGRVLDVES 268

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC +R  V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDV
Sbjct: 269 PTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDV 328

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 329 AARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 388

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAG 419
              +  +  P+   +R R  +  L      +S+  D+ +   V++     + D  ++A  
Sbjct: 389 GQRIAIDKIPTAADLRNRRLE--LTQAALRESLLEDDLEPFRVIVESLSDEFDMMEVALA 446

Query: 420 FLRIHR-----AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            +++             EEI  V++   R+               R    G++   + +G
Sbjct: 447 AVKLAHEAASPGSDDDEEEIPQVAVRPPREARPGQEGRGGERRPGRPRSGGTTQVFIGLG 506

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +     + L+  +   + ++ + IG+I +    + VEV A   D +        G++  
Sbjct: 507 RRAGVRPQDLVGAITGETQVSGRDIGSIEIADRFSLVEVPAAVADEVIA------GLRGS 560

Query: 535 YLGGEKPDFRGYKSSG 550
            + G K   R  +   
Sbjct: 561 TIKGRKTTVRRDRDRP 576


>gi|288870006|ref|ZP_06112545.2| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
 gi|288868832|gb|EFD01131.1| DEAD-box ATP-dependent RNA helicase YdbR [Clostridium hathewayi DSM
           13479]
          Length = 561

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 149/559 (26%), Positives = 265/559 (47%), Gaps = 35/559 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L   +  ++
Sbjct: 11  LDERILRAVADMGFEEASPIQAQAIPVQMEGRDIIGQAQTGTGKTAAFGIPLLQKVDPKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +        A+A+ PTRELA+QV  E+  L      V  +   GG  + ++ R L++G 
Sbjct: 71  KK------LQAIALCPTRELAIQVADEIRRLAKYMHGVKVLPIYGGQDIVKQIRSLKDGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DH+R K +   H+  VV+DEADEML++GF +D+E IL   P+ R+ +MF
Sbjct: 125 QIIIGTPGRVMDHMRRKTVKFDHIHTVVMDEADEMLNMGFLEDMETILSQLPEDRQTVMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A  +QK+ V V +  +      +      V    +   +  +L  +  K
Sbjct: 185 SATMPQAIADIAHKFQKEPVTVKVVKKELTVPKVTQYYYEVKPKTKVEVMCRLLDMYAPK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAA
Sbjct: 245 LSVVFCNTKKGVDELVQALQGRGYFAEGLHGDLKQIQRDRVMNSFRNGRTDILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + +L  + E  +HR GRTGRAGR+G++   +      +   + R    
Sbjct: 305 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRDIQRYCKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAG 419
            ++ +  PS+  +      +IL++    D+I+  +   +  +L K      +    +AA 
Sbjct: 365 KIIPQAIPSLNDVTGIKVDKILENVA--DTIEESDLSEMINILEKKLLEEDYTSLDLAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGSRDNFKG 465
            L++        E+I         D                                 + 
Sbjct: 423 LLKMMMGEEN--EDIIDTREPRSLDELDSYYRGENRNGNGRGRGRNGGGRDSRYEGGRED 480

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D + + +
Sbjct: 481 MARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQAM 540

Query: 526 K----LDKGIQLKYLGGEK 540
           K      K I ++   G K
Sbjct: 541 KDVKIKGKNIHMEKANGGK 559


>gi|323140806|ref|ZP_08075722.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414722|gb|EFY05525.1| DEAD-box ATP-dependent RNA helicase CshA [Phascolarctobacterium sp.
           YIT 12067]
          Length = 529

 Score =  306 bits (782), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 164/526 (31%), Positives = 258/526 (49%), Gaps = 27/526 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I  AL++ G+   + +Q A +   L   DV+  AQTG+GKT AFG+ L   +   
Sbjct: 12  ELDKKIVTALTDMGFEEPSPIQAATIPLVLEGNDVIGQAQTGTGKTAAFGIPLVQAI--- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL + PTRELA+QV  E+  +     V      GG  + R+ R L+N  
Sbjct: 69  ----TDFKHIQALIMTPTRELAIQVAEEVGKIGRTRRVRALPVYGGQPIERQIRALRNNV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGRL DHI    + + H+K +VLDEADEMLD+GF DDIE I+ S P +R+ L+F
Sbjct: 125 QIVIGTPGRLIDHINRGTIRLDHIKFLVLDEADEMLDMGFVDDIEEIMRSLPVERQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L K Y K    V I+ E      I+         D+   +  +L      
Sbjct: 185 SATMPRPILSLTKKYMKAPKNVTISKEELTVPLIEQYYF--ETKDKIEGLCRLLDAEIDG 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V   +  L+   +    L G+LSQ +R   ++  R+G   V IATDVAA
Sbjct: 243 KLIIFCRTKKGVDDLSIALSSRGYMAEGLHGDLSQNQRDRVMKKFREGAVDVLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ ++  +PE+ +HR GRTGRAG  G+++  I     R+ + + R    
Sbjct: 303 RGIDVDNITHVINFDIPQDPESYVHRIGRTGRAGNTGVAMTFITPREFRQLKLIERTVKT 362

Query: 366 SVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P+   + ER   +I+   Q  L L++   D   + + LL  +  E++AA  L+
Sbjct: 363 KIQRRQLPTAANVIERQRDQIISKMQTVLELNAYH-DYMPIAESLLDDYSAEEVAAAALK 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + + G+ A E   P   +  +D      R             G     +++G  QK   +
Sbjct: 422 LMQEGIKALE--APQEDILSKDLRNTGGRP------------GMVRLFINIGRSQKIMVK 467

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
            ++  +   + I  + IG I +    TFVEV  D  + +   +  +
Sbjct: 468 DIVSTIAIEADIPARDIGLINIYDKFTFVEVPEDVAEKVIGAMNKN 513


>gi|148256261|ref|YP_001240846.1| putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. BTAi1]
 gi|146408434|gb|ABQ36940.1| Putative DEAD-box cold-shock protein, ATP-independent RNA helicase
           [Bradyrhizobium sp. BTAi1]
          Length = 656

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 277/597 (46%), Positives = 377/597 (63%), Gaps = 26/597 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     +P  +  AL+ER Y   T VQ A+L+ +  ++D+LVSAQTGSGKTVA+GLA+A+
Sbjct: 1   MSFPATVPP-LARALAERNYEQPTPVQLAVLDDEAVDRDLLVSAQTGSGKTVAYGLAMAT 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL + +RF  ASAPLAL +APTRELA+QV REL WLY   G  V  C+GG+   RE+R+
Sbjct: 60  NLLGDAERFERASAPLALIVAPTRELALQVQRELAWLYQHAGARVVSCVGGMDPRREQRE 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDH+R   L+IS L+AVVLDEADEML+LGFR+D+EFIL ++P+ R
Sbjct: 120 LEAGAHIVVGTPGRLCDHLRRGRLDISDLRAVVLDEADEMLNLGFREDMEFILKTTPETR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT    I  LAK YQ DA R+ +  +   H+DI+YRAV +A  D ++A+VN+LR
Sbjct: 180 RTLLFSATFPRGIVALAKQYQDDAFRIEVEGDEGGHADIEYRAVRIAPGDAEHAVVNLLR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++ + +AIVFC+TR +V      L E  F VVALSGEL+Q ER+ ALQ +RDGR+RVC+A
Sbjct: 240 FYESPSAIVFCNTREAVRHLQAALLERGFSVVALSGELTQNERTLALQSLRDGRSRVCVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDL +L+LVIHAEL ++PE + HRSGRTGRAGRKG+SV ++P   +RRAE L 
Sbjct: 300 TDVAARGIDLANLDLVIHAELPNDPEVMQHRSGRTGRAGRKGVSVLLVPPARRRRAETLL 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +  VW  AP  + IR  D +R+L DP+  +    +++ +   LLA+  PE+IAA  
Sbjct: 360 NLAGIEAVWGTAPQADEIRRLDHERMLHDPVLSEETTAEDQALAQALLAERSPEEIAAAL 419

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF----------------- 463
            R++RA L  PE+I   +   GR R   D    + G G                      
Sbjct: 420 ARLYRARLPPPEDILDPAEERGRGRHERDRDNGRPGRGEERPPPVPRTKTGKPSARHGMG 479

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
           + S WF  ++G K+ AEARWL+PM+CR  GI +  IGAI++    T  E++A   D    
Sbjct: 480 EPSVWFRAAIGRKKNAEARWLLPMICRRGGIEKLDIGAIKISDTTTEFEIAARVADAFAA 539

Query: 524 TVK---LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK----RFKRFKGASKN 573
            ++    +  I+++ L    P  +G        K  +  A +      +R +  S N
Sbjct: 540 NIRRPDKEDTIRIEPL-AAAPSGQGASEKPRPDKRPRRAAEESAYHPLRRDEPRSGN 595


>gi|50954992|ref|YP_062280.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951474|gb|AAT89175.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 589

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 168/568 (29%), Positives = 272/568 (47%), Gaps = 31/568 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +   L + GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S
Sbjct: 18  TFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGLAQTGTGKTAAFALPILS 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           +P AL +APTRELA+QV    E        V  +   GG     +  
Sbjct: 78  RLDLSQ------KSPQALVLAPTRELALQVAEAFESYATHLKGVHLLPVYGGQGYGVQLS 131

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G HIVVGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P  
Sbjct: 132 ALRRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAEDVEKILADTPDD 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  ++K Y  D   V + +     ++   R ++V+ S + +A+  IL
Sbjct: 192 KQVALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSYSQKVDALTRIL 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+       + L    +   A+SG+++Q +R   +  ++ G+  + +
Sbjct: 252 EVENFEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVGQLKSGKLDILV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 312 ATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFVTTRERRLLTAI 371

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD-PEK 415
            +     +   P PSV+ +      R    +   L         + ++   +A HD PE 
Sbjct: 372 EKATRQPLTPMPLPSVDDVNVTRLARFDDAITSALAQQDRISRFRDIIAHYVAHHDVPEA 431

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------GSRDNFKG 465
             A  L +   G          +L    +R   D R  + G                ++ 
Sbjct: 432 DVAAALAVVAQGEEPLLLSADDALTQRIERDARDDRLARAGRDDRGRGERPVRRDRGYRP 491

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRR- 523
            + + + VG +Q+ E R ++  L    G++R   G IR+ PD + VE+ AD   D L R 
Sbjct: 492 MAPYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIRIMPDFSIVELPADLPGDTLARL 551

Query: 524 --TVKLDKGIQLKYLGGE----KPDFRG 545
             T    K I+L+   G     KPD RG
Sbjct: 552 TGTRISGKLIELRPDRGAGARRKPDERG 579


>gi|218887215|ref|YP_002436536.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758169|gb|ACL09068.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 531

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 162/556 (29%), Positives = 264/556 (47%), Gaps = 34/556 (6%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE  ++ + I +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFG+
Sbjct: 1   METLRFEELSLSKEILKAIEEMGFEETSPIQALAIPHILEGRDVIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            L   +               + + PTRELA+QV  EL  L ++   +  +   GG  + 
Sbjct: 61  PLLERIDPREKDI------QGIILCPTRELAIQVAEELTQLASRKRGLYVLPVYGGQPID 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L+ GA +VVGTPGR+ DH+    +N+S ++  VLDEADEMLD+GFRDDIE IL  
Sbjct: 115 RQFKALRRGAQVVVGTPGRVMDHMERGTINLSTVRMAVLDEADEMLDMGFRDDIEHILGQ 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P + + + FSAT+ PAI  +A+ + K    + +  +      I+     V    +  A+
Sbjct: 175 VPGEAQTVFFSATMPPAILDMAQRFLKTPEFLKVTQKQVTVPSIEQIYYEVRPFQKLEAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  K AIVFCST+  V   T+ L    +Q   L G L+Q +R   +   R    
Sbjct: 235 CRVLDLYNPKRAIVFCSTKRGVDELTQHLQGRGYQADGLHGNLNQSQRDRVMARFRSNGI 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ D+E V++ ++ +  E+ +HR GRTGRAGR G +   +      +
Sbjct: 295 EILVATDVAARGIDVDDVEAVVNYDIPNAVEHYVHRIGRTGRAGRSGRAFTFVSGRDFYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE- 414
              + +     +V    P+   +      ++L +        G+ +K  D++ +  D + 
Sbjct: 355 LRDIKKFTKAHIVQHQVPTSSDVATVKTNQLLAEVRRHIE-AGELEKYTDIVESFLDEDV 413

Query: 415 ---KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
               +AA  L++                   R    D     +          G     L
Sbjct: 414 TTVDMAAALLKLLM-----------------RRELGDAVPGGEKTPAGTGAEPGMVRLFL 456

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
           +VG K +  AR ++  +   +GI  + IGAI ++  ++FVEV AD    +   +     I
Sbjct: 457 NVGRKMRVTARDIVGAIAGETGIPGRMIGAIDIRDRVSFVEVPADYAQEVISVMN-GNQI 515

Query: 532 QLKYLGGEKPDFRGYK 547
           +   LG E    R  +
Sbjct: 516 RGFRLGVEPATPRDRE 531


>gi|119718818|ref|YP_925783.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539479|gb|ABL84096.1| ATP-dependent RNA helicase CsdA [Nocardioides sp. JS614]
          Length = 589

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 158/579 (27%), Positives = 271/579 (46%), Gaps = 40/579 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +AL++ GY   +++Q A + P L  +DV+  AQTG+GKT AF L + S
Sbjct: 15  TFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQTGTGKTAAFALPILS 74

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L          + P AL +APTRELA+QV    E   A    V  +   GG     +  
Sbjct: 75  RLDLTQ------TTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGGQGYGVQLS 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S L+ +VLDEADEML++GF +D+E IL  +P  
Sbjct: 129 ALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVETILADTPDD 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + + +FSAT+   I  ++K Y  D   + +  +    S+I  R + V+   + +A+  IL
Sbjct: 189 KNVALFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQKVDALTRIL 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+       + L       +A++G+++Q +R   +  ++ G+  + +
Sbjct: 249 EVENFEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLKSGKLDILV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 309 ATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERYLLKHI 368

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPE 414
            +     +     P+VE +      R   D    +++   +     + +V   + +HD  
Sbjct: 369 EKATRQPLTQMQLPTVEDVNSTRLSRF--DDAITEALSQTQRIDAFRDIVAHYVREHDVP 426

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---------- 464
           +          A    P  + P    +     R++           D+            
Sbjct: 427 EADVAAALAVVAQGETPLLLDPADRANELRAPREERAGQGTRRDRHDHGGPGGHGGPPRE 486

Query: 465 ---------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
                      + + ++VG + K E R ++  +    G++RQ  G I ++ D + VE+ A
Sbjct: 487 RRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHSLVELPA 546

Query: 516 D----GVDLLRRTVKLDKGIQLKYL-GGEKPDFRGYKSS 549
           D      D LR T    K I+L    GG   D R  K  
Sbjct: 547 DLPAGAWDSLRSTRISGKLIELTRDGGGPAADTRHKKPR 585


>gi|313672966|ref|YP_004051077.1| dead/deah box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939722|gb|ADR18914.1| DEAD/DEAH box helicase domain protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 528

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 162/530 (30%), Positives = 273/530 (51%), Gaps = 28/530 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + + +ALS++G+   T +QE ++   L+  +D++  AQTG+GKT AFGL L   L  +
Sbjct: 12  LSENVLKALSKKGFEEPTPIQELVIPKLLQGERDIVGQAQTGTGKTAAFGLPLIELLDDK 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          A+ + PTRELA+QV  E+  L  K  + +    GG S+  + R L+N A
Sbjct: 72  SPFV------QAIVLTPTRELALQVAEEMNSLKGKKRLNIVPIYGGQSMELQLRRLENNA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DHI  K L ++ LK +VLDEADEML++GF +DIE I+  + + +RML+F
Sbjct: 126 HIVVGTPGRVIDHINRKTLRLNKLKFMVLDEADEMLNMGFIEDIEEIIKHTNEDKRMLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y KD   + + ++       +     V   D+  A+  I       
Sbjct: 186 SATMPKEILNIAKKYMKDYEVLAVKTKQLTTELTEQIYFQVREEDKFEALCRIRDMEKEF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+  V      L +  +   AL G++SQ +R   L+  +  +  + +ATDVAA
Sbjct: 246 YGLIFCRTKVDVDTVCNRLIDRGYNAEALHGDISQYQRERILKRFKAKQINMLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     R+   + + A  
Sbjct: 306 RGIDISDLTHVINYSLPQDPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLLYIMKIAKA 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +  PSV  + +   +RI  +   +  D++  D  ++ + LL ++DP KI A  L++
Sbjct: 366 DIKKKKVPSVSEVIQAKKERIKDEVSDILSDNMSNDYFELANKLLEEYDPVKIVAALLKM 425

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           +          + +S VS  DR                  KG +   +++G  +    + 
Sbjct: 426 NYKDDFEAGSYSEISEVSNVDR------------------KGKARLFIAMGKLENMTPKK 467

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLRRTVKLDKGIQ 532
           ++  +   +GI    I  ++V    +F+ V   D   ++    K ++G +
Sbjct: 468 IVDFIVDKTGIKESDIKEVKVFDKFSFISVPYEDATYIVNIFKKQNRGKR 517


>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 570

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/532 (31%), Positives = 262/532 (49%), Gaps = 15/532 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   + +AL+E GY   T +Q A + P L   DV+  A TG+GKT AF L +   +    
Sbjct: 23  LRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHRIRDGE 82

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R    +AP A+ + PTRELA QV   +     + GV V    GG S+ R+ R L
Sbjct: 83  RGERGARAQRGAAPSAVVLVPTRELAAQVCEAMRRYGRRLGVRVLPVYGGQSMSRQLRAL 142

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGR  DH+    L++S L+ VVLDEADEMLD+GF +DI+ IL+ +P  R+
Sbjct: 143 EEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEMLDMGFAEDIDTILERTPDDRQ 202

Query: 182 MLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+ P I  L + Y +D  R+      S +   + I   A +V    +  A+  +
Sbjct: 203 TMLFSATMPPRIAGLVRRYLRDPRRIELSRAESLDGDAASITQTAYVVPRGHKPAALGRV 262

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  +VFC TR  V R T+ +    ++  AL G + Q +R+  +  +R G A + 
Sbjct: 263 LDIETPEATVVFCRTREEVDRLTETMNGRGYRAEALHGGMDQHQRNRVVGRLRTGTADLV 322

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L  V++ ++ S PE  +HR GR GRAGR+G ++ +      R  + 
Sbjct: 323 VATDVAARGLDIDQLTHVVNYDVPSAPEVYVHRIGRVGRAGRQGSAITLAEPGEHRMIKA 382

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V     P+V  +R R  +     L++ L  D      + +V+ L  + D  +
Sbjct: 383 IERVTGQPVPIRKLPTVADLRARRLELTRAALREVLAGDEDLDRYRAVVEPLTEEFDVTE 442

Query: 416 IAAGFLRIHRAGLCA-PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           IA   +++      A  EE  P   +    R R   R  K G   R    G +   +S+G
Sbjct: 443 IALAAVKLAHDAEHATDEEEIPDVELRPEVRTR---RLPKNGRKGRRTSGGMTRLFVSLG 499

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            +     + L+  +   S +  + +GAI +    + V+V     D +   ++
Sbjct: 500 RQAGVRPQDLVGAIAGESCLRGKDVGAIEIADRFSLVDVPDAAADEVITALR 551


>gi|312138933|ref|YP_004006269.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311888272|emb|CBH47584.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 610

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 162/572 (28%), Positives = 278/572 (48%), Gaps = 26/572 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + + +ALS+ GY + + +Q A +   L  KDV+  AQTG+GKT AF + + S
Sbjct: 16  TFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILS 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            L  +         P AL +APTRELA+QV     ++     G+ V    GG +   +  
Sbjct: 76  RLDVDR------KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLS 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I+VGTPGR+ DH+    L++S+L+ +VLDEADEML +GF+DD+E IL  +P+ 
Sbjct: 130 GLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEY 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  ++K Y  D V + + ++    S+I  R V VA   + +A+  IL
Sbjct: 190 KQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRIL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+ +     + L    F   A++G++ Q +R   +  ++ G   + +
Sbjct: 250 EVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 310 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSI 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDP-- 413
            R     +     P+VE +  +   +        +S+  +     +K+++    +HD   
Sbjct: 370 ERTTRQPLTEIQLPTVEDVNAQRVSKFGDS--ITESLNSENLALFRKLIEDYEREHDVPL 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-----SW 468
             IAA      R G        P +        R+        GG      G      + 
Sbjct: 428 ADIAAALAVQSRDGESFLMAPEPPAPPRREREPRERPARRFDDGGPSGPRVGRDGQEFAT 487

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRT 524
           + ++VG + K     ++  +    G+ R   G I ++PD + VE+ A    + V+ LR T
Sbjct: 488 YRIAVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANLPKETVEALRAT 547

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
                 IQL+   G     +G      ++   
Sbjct: 548 RISGVLIQLQLDQGAPTGRQGRGGREDRAGGK 579


>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 605

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 176/610 (28%), Positives = 293/610 (48%), Gaps = 50/610 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMANKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           +++          +AP  L +APTRELAVQV             +  +   GG S+ ++ 
Sbjct: 66  NSIDPTT------NAPQILVLAPTRELAVQVAEAFASYSKFMKGMHVLPIYGGQSMQQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+VGTPGR+ DH+R   L ++ LKA+VLDEADEML +GF DDIE+IL+ +P+
Sbjct: 120 NSLRRGPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEMLKMGFIDDIEWILEHTPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R++ +FSAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +
Sbjct: 180 ERQLALFSATMPEQIKRVANKYLDNPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + 
Sbjct: 240 LEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDII 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R     +     PS E + ER   R+   + + +  DS+   +  +  +    + D +
Sbjct: 360 IERATKSRISPMDVPSPETVTERRLSRLGEQVAEIISKDSLDFMKGAVAQLCQQLEVDTD 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------------- 457
            +AA  L+  +      E    +  ++ R R   D R  +  G                 
Sbjct: 420 ILAAALLQQVQK-----ERPLQLPSINERQRDNRDDRNSRDRGSRDRNDRPRRDSRPTPT 474

Query: 458 --GSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
             G  D  K       S + + VG         ++  +   + I+ + IG I++  ++T 
Sbjct: 475 NLGKADALKDNPDVKMSRYIIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDNMTA 534

Query: 511 VEVS----ADGVDLLRRTVKLDKGIQLKYLGG-EKP--DFRGYKSSGFKSKNSQDGATKR 563
           +++      D +D L++     K + ++   G E P  D R  +     S + +    ++
Sbjct: 535 IDLPDGMPKDVLDHLKKVRVCGKPLNIREADGAEMPAGDSRPPRRPRKPSGDRRPSGDRK 594

Query: 564 FKRFKGASKN 573
             R KG S++
Sbjct: 595 PHR-KGPSRD 603


>gi|46143724|ref|ZP_00134573.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208057|ref|YP_001053282.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190149888|ref|YP_001968413.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303252206|ref|ZP_07338374.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126096849|gb|ABN73677.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915019|gb|ACE61271.1| cold-shock DEAD box protein A-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648989|gb|EFL79177.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
          Length = 619

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 158/619 (25%), Positives = 275/619 (44%), Gaps = 54/619 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E        V  V   GG     + R
Sbjct: 67  QIDPTK------RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E +  +  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 EHLMKKPIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AA  + + +          P               DR               +N      
Sbjct: 421 AAAMMMMLQEKQKLILPPDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RR 523
           + + +G +   E R ++  +     I+ + IG I++    + +E+     + +     ++
Sbjct: 481 YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK 540

Query: 524 TVKLDKGIQLKYLG-----GEKP------------------------DFRGYKSSGFKSK 554
              L+K +Q+  LG       +P                             +  GF  +
Sbjct: 541 ARVLNKQMQMSLLGPAGGVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDR 600

Query: 555 NSQDGATKRFKRFKGASKN 573
                  KRF       ++
Sbjct: 601 KKGGFKEKRFNDKGRGRRD 619


>gi|319787505|ref|YP_004146980.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466017|gb|ADV27749.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 616

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 158/563 (28%), Positives = 268/563 (47%), Gaps = 37/563 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+  GY   + +Q A +   L  +DVL +AQTG+GKT AF L + S L  + 
Sbjct: 19  LPEPLLAALTAVGYETPSPIQAATIPALLSGRDVLGTAQTGTGKTAAFALPILSHLDLKL 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R      P AL +APTRELA+QV    +    +      +   GG     +   L+ G 
Sbjct: 79  AR------PQALVLAPTRELAIQVAEAFQRYAVQMPGFQVLPIYGGQGYGPQLHALRRGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF DD+E +L   P +R++ +F
Sbjct: 133 HVVVGTPGRVIDHLERGTLDLSGLRNLVLDEADEMLRMGFIDDVEAVLKKVPDERQVALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y ++ V V IAS+    ++I  R   V+   + +A+  IL      
Sbjct: 193 SATMPPPIRRIAQTYLREPVEVTIASKTTTSANIRQRYWFVSGMHKLDALTRILEAEPFD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+A+       L        A++G++ QQ+R   +Q ++DGR  V +ATDVAA
Sbjct: 253 AMIVFARTKAATEELANKLQARGVAAAAINGDMQQQQRERTIQQLKDGRLDVLVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     + R    
Sbjct: 313 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGMLRAIERATRQ 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     P+V+A+ +R   R  +         G  + +++VD    +HD           
Sbjct: 373 PIEEMRLPTVQAVNDRRVARFFERIEGTLEAGGLDEYRELVDRYATEHDVGAAEIAAALA 432

Query: 424 HRAGLCAP------EEITPVSLVSGRDR--FRDDSRAFKVGGGSRDNF------------ 463
                  P      +E  P      R+   F +  R  +   G  D+F            
Sbjct: 433 RLLQGDVPLLLEARDEPAPREQRPAREPRAFEERERGPRPPRGRDDDFAPRAPRAPKPPR 492

Query: 464 ----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA---- 515
                G   + + VG     +   ++  +   +G+  + IG I +  D + +++ A    
Sbjct: 493 EAPQPGMETYRVEVGHVHGVKPGNIVGAIANEAGLESRYIGRIDIHEDHSILDLPAGMPP 552

Query: 516 DGVDLLRRTVKLDKGIQLKYLGG 538
           + +  L++   + + +++    G
Sbjct: 553 EIMSHLQKAWVVGQQLRITPWDG 575


>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
           3043]
          Length = 568

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 157/560 (28%), Positives = 251/560 (44%), Gaps = 16/560 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I   L   GY   + +Q   +   L  +DVL  AQTG+GKT AF L L S L  +
Sbjct: 15  SLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLSRLDLQ 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P  L +APTRELA QV             +  +   GG     +   L+ G
Sbjct: 75  R------REPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYREQLSGLRRG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DH+    L +  L A+VLDEADEML +GF DD++ ++  +PK  + + 
Sbjct: 129 AQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLRMGFIDDVKRVVSDTPKDAQRVF 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I+ +  +Y  D +R+ I ++ +    I+ R V +    +  A+  +L     
Sbjct: 189 FSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGAKLEALSRLLEVEPV 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  TRA+ +   + L        ALSG+L Q  R   ++ ++ G+  V IATDVA
Sbjct: 249 DAAIVFVRTRAACTTLVEQLLLRGVNAAALSGDLDQSLRERTVERLKRGKVDVLIATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + +L  + E   HR GRTGRAGR G+++       QRR   + R   
Sbjct: 309 ARGLDVPRITHVFNYDLPQDAEAYTHRIGRTGRAGRTGVAITFAGGREQRRVRDMERVTG 368

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLR 422
             +     P  +AIR    +   +  L   +   D ++ +   L    +DP  +A     
Sbjct: 369 QQMQEVELPDEDAIRAHRNELFRKRVLDTLARGSDYQRELIDGLVDDGYDPVDLACAMAS 428

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           + R+G      +        R     D +  +   G      G + + +SVG K   +  
Sbjct: 429 MARSGEAPIGRLPKPGERRSRQSSGRDDKPNRRDRGPSA---GMTRYRVSVGHKDGVKPG 485

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGG 538
            L+  L    GI+   IG I ++   + VE    + A  +  + +     + +++    G
Sbjct: 486 QLVGALANEGGIDGGKIGRIDIRNAFSVVELPNTLPAAVLSRIAQARVAGRPLEIAEDHG 545

Query: 539 EKPDFRGYKSSGFKSKNSQD 558
                   +     S   + 
Sbjct: 546 APERAPRRRREDGDSTPRRR 565


>gi|165975989|ref|YP_001651582.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876090|gb|ABY69138.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 619

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 158/619 (25%), Positives = 275/619 (44%), Gaps = 54/619 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E        V  V   GG     + R
Sbjct: 67  QIDPTK------RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E +  +  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 EHLMKKPIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AA  + + +          P               DR               +N      
Sbjct: 421 AAAMMMMLQEKQKLILPPDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RR 523
           + + +G +   E R ++  +     I+ + IG I++    + +E+     + +     ++
Sbjct: 481 YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK 540

Query: 524 TVKLDKGIQLKYLG-----GEKP------------------------DFRGYKSSGFKSK 554
              L+K +Q+  LG       +P                             +  GF  +
Sbjct: 541 ARVLNKQMQMSLLGPAGGVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDR 600

Query: 555 NSQDGATKRFKRFKGASKN 573
                  KRF       ++
Sbjct: 601 KKGGFKEKRFNDKGRGRRD 619


>gi|88857246|ref|ZP_01131889.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
 gi|88820443|gb|EAR30255.1| RNA helicase DeaD [Pseudoalteromonas tunicata D2]
          Length = 624

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 168/586 (28%), Positives = 268/586 (45%), Gaps = 34/586 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++E GY+  T +Q   +   L  KDVL  AQTG+GKT AFGL L S L A+
Sbjct: 13  NLLAPVLQAINEMGYITPTPIQSQAIPSLLAGKDVLGEAQTGTGKTAAFGLPLLSRLDAD 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
                    P  L + PTRELA+QV   L        G+ VA   GG S   + RDL  G
Sbjct: 73  ------LKQPQMLVVCPTRELAIQVAEALTDFAKHIRGLFVATVYGGQSYTPQLRDLARG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DHI+   L + +LKA VLDEADEML++GF +DIE+IL+  P + +M  
Sbjct: 127 PQIVVGTPGRMMDHIKKGRLKLDNLKACVLDEADEMLNMGFLEDIEWILNQIPDQTQMAF 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +   +  D + V IA +      I  ++  V    +   +  I      
Sbjct: 187 FSATMPAPIKKITNQFLTDPIHVKIAVQKSDKPKITQKSWTVGRIGKTVGLERIAEVVDY 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  TR       + L    F+  AL+G++ QQ+R   ++ +++GR  + IATDV 
Sbjct: 247 DAMIVFVRTRNDTLVLAEHLVSKGFKASALNGDMQQQDRERIVEQLKNGRINILIATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  VI+ +L  + E+ +HR GRTGRAGR+G ++        R   RL R   
Sbjct: 307 ARGLDVPRITHVINYDLPHDSESYVHRIGRTGRAGREGEAILFASHREVRSLSRLERITE 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAA 418
             +     P+ E + +   +R       + +++ ++      ++++        P ++AA
Sbjct: 367 GKIEVFDMPTAEQLGQARIER--TQAALVKAMEVNDLANFQAIVSQMAEQSNTTPLELAA 424

Query: 419 GFLRIHRAGLCAPEEITPVSL-------VSGRDRFRDDSRAFKVGGG-------SRDNFK 464
             L   +  L    +  PV           GRDR     R  +            R +  
Sbjct: 425 ALLFDRQIALPFHPKADPVEREFAARSDRGGRDRNDRFDRNDRSERAPRERSERPRRDNG 484

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDL 520
               +  +VG         ++  +     I+   IG IR+    T V++  +      + 
Sbjct: 485 EFDTYRFNVGRTHGVRPGDIVGAVANEIKIDSNDIGQIRLFDGFTHVDLPKNMPKPAFEK 544

Query: 521 LRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ-DGATKRFK 565
           L++ +     I    +  E+      +      ++ + D A + F+
Sbjct: 545 LQQVLIRKHKISPSLVTAEQAAAADSQREERAPRSDRNDRAPREFQ 590


>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Methanoregula boonei 6A8]
 gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
          Length = 532

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 148/529 (27%), Positives = 256/529 (48%), Gaps = 34/529 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I +A+   G+   T +Q   +      +DV   AQTG+GKT AFG+ +   + A 
Sbjct: 11  SLSKEIAKAIENMGFEEPTPIQALAIPLIQAGRDVTAQAQTGTGKTSAFGIPVIENIDAS 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                       + + PTRELA+Q+  E   L A    +  +   GG  + R+ + L NG
Sbjct: 71  Q------RVVQVIVLCPTRELAIQIAEEFSHLLAYLPKISVLPVYGGQPIERQLKALANG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIV+GTPGR+ DH++ + L++ H+  VVLDEAD+MLD+GFRDDIE IL   P+KR+ L+
Sbjct: 125 VHIVIGTPGRVMDHLKRRTLSLDHVSMVVLDEADQMLDMGFRDDIELILKRVPQKRQTLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  ++K +Q     V +  +      I+   + V   D+ +++  ++     
Sbjct: 185 FSATLPKPIIEISKRFQNRPEFVRVEYQELTVPAIEQSYIEVRDRDKLDSLCRVIDVVDP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+FC+T+         +    ++   L G++ Q +R   +   R G   + IATDVA
Sbjct: 245 QLAIIFCNTKRGAEDLAGRIRARGYRAEELHGDMKQSQRDRVMGGFRKGTIDILIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+++VI+ ++  + +  +HR GRTGRAG+ G ++  +      +   + +   
Sbjct: 305 ARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRDFTKLREIQKYIK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-----EKIAAG 419
           V +  +P P+ + + E+  + IL++    ++IQ    +    ++ +         +IAA 
Sbjct: 365 VQIPRKPLPTADDVVEQKTKTILEE--VRETIQKGGTEPYARIVEQESEGDLTTLEIAAA 422

Query: 420 FL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            L  R+ +      E   P                     G      G   F L +G   
Sbjct: 423 LLKIRLEQGSDSHTEHAVPKDF------------------GDTGAESGMVRFFLGIGRDH 464

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K   + ++  +   +GI  + IGAIR+    +FVEV  +    +   +K
Sbjct: 465 KVAPKDIVGAIAGETGIPGKYIGAIRILDTYSFVEVPREYAGEVYTIMK 513


>gi|120405422|ref|YP_955251.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119958240|gb|ABM15245.1| ATP-dependent RNA helicase CsdA [Mycobacterium vanbaalenii PYR-1]
          Length = 564

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 165/563 (29%), Positives = 267/563 (47%), Gaps = 28/563 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+++ GY   + +Q A +   L   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  ++          AL +APTRELA+QV        A   V V    GG S   +   
Sbjct: 74  KIDTDSRN------TQALVLAPTRELALQVAEAFGRYGAHLRVNVLPIYGGASYVPQLSG 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VVGTPGR+ DH+    L++SHL  +VLDEADEML +GF +D+E IL  +P+ +
Sbjct: 128 LKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYK 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+ PAI  +   Y  D V V + S+ +   +I  R  LV+   + +A+  +L 
Sbjct: 188 QVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDALTRLLE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+ +     + L    F   A++G++ Q  R   +  ++DG   + +A
Sbjct: 248 VEQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTIDILVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  +PE+ +HR GRTGRAGR G ++  +    +     + 
Sbjct: 308 TDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHLLGAIE 367

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLAK 410
           R     +V    PSVE + E+   +        L+ P   LF   I+G E+   DV +A 
Sbjct: 368 RVTRQKLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDH-DVPMA- 425

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                IAA      R G        P      R          +     R+     + + 
Sbjct: 426 ----DIAAALALQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATYR 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVK 526
           ++VG + K     ++  +    G++R   G I ++ D + VE+ A      +  L  T  
Sbjct: 482 IAVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPAKLSHKTLKALENTRI 541

Query: 527 LDKGIQLKYLGGEKPDFRGYKSS 549
             + I L+   G KP     +S 
Sbjct: 542 QGQLIHLEPDRGPKPHRGRPQSK 564


>gi|294142501|ref|YP_003558479.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
 gi|293328970|dbj|BAJ03701.1| ATP-dependent RNA helicase DeaD [Shewanella violacea DSS12]
          Length = 617

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 174/613 (28%), Positives = 285/613 (46%), Gaps = 55/613 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  +L + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L ST+    
Sbjct: 13  LSEPLLRSLDDLGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSTID--- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S  +AP  L +APTRELAVQV             +  +   GG S+H++   L+ G 
Sbjct: 70  ---SSLNAPQILVLAPTRELAVQVAEAFASYAKHMKGLHVLPIYGGQSMHQQLNALRRGP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +F
Sbjct: 127 QVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +L     +
Sbjct: 187 SATMPEQIKRVANKYLTEPVHVKIAATTATVETIEQRFVQVSQHNKLEALVRVLEVESTE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A+  ++ G   + IATDVAA
Sbjct: 247 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGSLDILIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E  +HR GRT RAGR GM++  +     R    + R    
Sbjct: 307 RGLDVERIGHVINYDIPYDTEAYVHRIGRTDRAGRSGMAILFVTHREMRMLRTIERATKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGFL 421
            +     PS E++ ER   R+   + + +  DS+   +  +  +    + D + +AA  L
Sbjct: 367 RISPMDVPSPESVTERRLSRLGEQVAEIISKDSLDFMKGAVAQLCQQLEVDTDILAAALL 426

Query: 422 R------------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----- 464
           +            ++     + +     +     DR    +R  +     RD+       
Sbjct: 427 QQVQKERPLQLPAMNERQRDSRDSRDSRNTRDRNDRGERGARGERSERPRRDSRPTPSNL 486

Query: 465 ------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                           + + VG         ++  +   + I+ + IG I++   +T ++
Sbjct: 487 GSADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDQITAID 546

Query: 513 V----SADGVDLLRRTVKLDKGIQLKYL--------GGEKPDFRGYKSSGFKSKNSQDGA 560
           +     AD +  LR+     K + ++          G  +P  R  K S  +   S D  
Sbjct: 547 LPAGMPADVLQHLRKVRVCGKPLNIREAEGAELPAGGDSRPARRPRKPSSDRRPASGD-- 604

Query: 561 TKRFKRFKGASKN 573
            K+  R  GA K 
Sbjct: 605 -KKPHRKGGAPKE 616


>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 598

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 161/600 (26%), Positives = 281/600 (46%), Gaps = 42/600 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +     + +++ + GY   + +Q A +   +  KD++  AQTG+GKT AF L +
Sbjct: 7   ITSFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPM 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            S L A+++          L +APTRELA+QV    +        +  +   GG     +
Sbjct: 67  LSRLDAKDNN------TQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDIQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA IVVGTPGR+ DHIR   L + +LKA+VLDEADEML +GF DD+E++L  +P
Sbjct: 121 LRQLKRGAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLRMGFIDDVEWVLGHTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R++ +FSAT+   I  +A+ Y  +   + I ++    + I+ R  LV+   + +A+  
Sbjct: 181 KTRQIALFSATMPKEIKKVAEKYLHEPEHIKIQTKTSTATTINQRYWLVSGIHKLDALTR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        I+F  T+ + +     L    F+  AL+G+++Q  R   ++ ++ G+  +
Sbjct: 241 VLETEEFDGMIIFVRTKIATTELADKLTARGFRAEALNGDIAQTTRERIVEKLKKGQIDI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +
Sbjct: 301 LIATDVAARGLDVERISHVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFVAHRERRMLK 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------ 411
            + R  N  +     PS++ I E+   R   +   L +I+ D+       + K       
Sbjct: 361 AIERATNQPITEMQMPSIDNINEQRMSRF--ERKVLSTIENDDLSFFKQFITKLEEKTDT 418

Query: 412 DPEKIAAG-----------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           DP+ IAA               + +A     E          RDR   D  + +    S 
Sbjct: 419 DPQIIAAALAKLAGGDELILKELPKAKKERSERADRPERSDRRDRKGRDEGSKRSSDRSF 478

Query: 461 DNFK---------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +              F +  G     +   ++  +   + I+ + IG I +  + T V
Sbjct: 479 SPYAQPLKSHPDIEMERFKIEAGHSHNVKVSNIVGAIANEAEIDSEYIGRIDIFDEFTTV 538

Query: 512 EVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF-KSKNSQDGATKRFKR 566
           ++ A    + + +L +     + + L  +G +K      K  G  K K        +FK+
Sbjct: 539 DLPAGMPKEVLQILSKAYVAGRPMSLTVIGDQKASKGDSKFKGKDKGKPKSKAGKPKFKK 598


>gi|110598397|ref|ZP_01386670.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340006|gb|EAT58508.1| Helicase-like:DbpA, RNA-binding:DEAD/DEAH box helicase-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 598

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 159/561 (28%), Positives = 264/561 (47%), Gaps = 29/561 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL E GY N T +Q   +   L  +DVL  AQTG+GKT AF L + S +    
Sbjct: 16  LAEPLMQALEEVGYENPTPIQAETIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIRLA- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 + P AL +APTRELA+QV    +           V   GG     + R L+ G 
Sbjct: 75  -----LAEPQALVLAPTRELAIQVAEAFQRYAVHLKGFHVVPIYGGQDYGIQLRMLKRGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+ILD +PK R++ +F
Sbjct: 130 HVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILDQTPKDRQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y  +  +V I ++      I  R  +V  S + + +  IL      
Sbjct: 190 SATMPSAIRRIAQKYLNNPAQVTIQTKTTTVETIRQRYWIVGGSHKLDILTRILEVEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       + L    +   AL+G+++Q +R   +  +++G   + IATDVAA
Sbjct: 250 GILIFVRTKTMTIELAEKLQARGYGAAALNGDMAQNQRERTVDQLKNGALSIVIATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + +  + 
Sbjct: 310 RGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRTGDAILFVSPREKNMLYAIEKATHS 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKI--AAG 419
            +     PS E I  +   +  Q     D+I  ++     ++++    +HD   I  AA 
Sbjct: 370 RIELMELPSTEIINNKRIAKFNQK--ITDTIAAEDLDFFTRIIEQYCHEHDVPVIEAAAA 427

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK----------VGGGSRDNFKGSSWF 469
              + +          P    S  DR                        R + +G   +
Sbjct: 428 LASLVQGETPLLLSNKPEKTRSHDDREGSGRDRGSDRDRGFDRDRGPSKRRSSDEGKERY 487

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTV 525
            L VGS+   +A  ++  +    G++  S+G I +    + VE+     D     LR+  
Sbjct: 488 RLEVGSEHGVKAGNILGAILNEVGLDPDSVGQISINDSYSTVELPQGMPDNVFHELRKVR 547

Query: 526 KLDKGIQLKYLGGEKPDFRGY 546
              + ++L  +  +  +   Y
Sbjct: 548 VCGRQLRLSKMEDQDRNSSPY 568


>gi|119387071|ref|YP_918126.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119377666|gb|ABL72430.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 687

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 279/555 (50%), Positives = 368/555 (66%), Gaps = 15/555 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LTSVQEA L P+ R +DVLVSAQTGSGKTVAFGLA+A  +L + +    A  PLA
Sbjct: 27  KGYASLTSVQEAALAPEARGRDVLVSAQTGSGKTVAFGLAMAGDIL-DGETLPEAGQPLA 85

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L+ GAHIVVGTPGRL D
Sbjct: 86  LAIAPTRELALQVARELGWLYEQAGARIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 145

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L+++ L+A VLDEADEMLDLGFR+D+EFIL S+P +RR L+FSAT+ PAI  LA
Sbjct: 146 HIERGSLDLTALRACVLDEADEMLDLGFREDLEFILGSAPAERRTLLFSATVPPAIEALA 205

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           +++Q+DA+R+    E RQH DI+YRA+ V   DR++AI N LRY+ A  AI+FC TRA+V
Sbjct: 206 RDFQRDALRIQAMGEARQHGDIEYRAMSVTTRDREHAIFNTLRYYEASRAIIFCKTRANV 265

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    F+VVALSGELSQQERS+ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 266 NHLLARMGNRGFKVVALSGELSQQERSHALQALRDGRARVCIATDVAARGIDLPGLELVI 325

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +NP+ LLHRSGRTGRAG KG SV ++P +  +RA+RL + A +   W  APS + 
Sbjct: 326 HADLPTNPDTLLHRSGRTGRAGAKGTSVLIVPSSEYKRAQRLLQRAKLVAEWGKAPSADE 385

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ RD  R+L  P   ++  GDE  +   LL +   E++A+ F+R+ R G  APEE++  
Sbjct: 386 VQARDDARMLDHPALAEA-PGDEAGLAAALLDRFGAERVASAFVRLWREGRPAPEELSES 444

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +  +                     F  + WF LSVG   +AEARWL+P +C + GI R 
Sbjct: 445 AAPAPSAPRERGE------------FGPAVWFLLSVGHSGRAEARWLLPKICEAGGITRD 492

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ 557
           +IGAIRV+ D TFV+++A         ++L+ G+ ++ + GE P F        K     
Sbjct: 493 AIGAIRVKTDQTFVQIAAPVAPNFGERIELEPGLTMRRIEGE-PVFDAAPVREKKPHRGP 551

Query: 558 DGATKRFKRFKGASK 572
                R +  +  +K
Sbjct: 552 APVAARPEPLEPRTK 566


>gi|152981099|ref|YP_001355159.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281176|gb|ABR89586.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 778

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 154/577 (26%), Positives = 263/577 (45%), Gaps = 49/577 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++   + +   L E GY + + +Q A +   L  +DVL  AQTG+GKT +F L + +
Sbjct: 8   LFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTASFALPILA 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  +       + P AL +APTRELA+QV    +           +   GG S   +  
Sbjct: 68  RIDIKQ------TTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQLS 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S +K +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 122 ALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPES 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+  AI  +A  Y +D   + +A++     +I  R  LV+   + +A+  IL
Sbjct: 182 RQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRIL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+         L    F   A++G++ QQ+R   +Q ++DG+  + +
Sbjct: 242 EAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDILV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  +PE+  HR GRTGRAGR G ++  I    +   + +
Sbjct: 302 ATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKAI 361

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSVEA+ +    R  +     ++I     ++   L+  ++ E     
Sbjct: 362 ERATRQPISVLELPSVEAVNDVRISRFKEQ--IAETIAAGGLEVFHSLIEDYEREHNVPA 419

Query: 415 -KIAAGFLRIHR--------------------------AGLCAPEEITPVSLVSGRDRFR 447
            +IAA   ++ R                                E           DRF 
Sbjct: 420 VEIAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFERGDRPERGDRFE 479

Query: 448 DDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
              R  A +     R    G   F + VG     +   ++  +   + ++ + IG I + 
Sbjct: 480 RSERPAAPRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIY 539

Query: 506 PDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGG 538
            D + +++      +  + L+      + + +   G 
Sbjct: 540 DDYSTLDLPENLSPEQFNHLKTVWVAGQQLNISREGD 576



 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 5/123 (4%)

Query: 454 KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           K     + +      + + VG     +   ++  +   +G+  + IG I +  D + +++
Sbjct: 632 KKERERKGSGVDMEPYRVEVGHAHGVKPANIVGAIANEAGLEAKYIGRIEIFDDYSLLDL 691

Query: 514 SA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
            A    +  D L+        ++L       P                 G  +R      
Sbjct: 692 PAGMPTEVFDQLKSVAIGTHKLRLSR-SSVAPAPEKTSGKKITLSAPNKGGDRRVAEKGR 750

Query: 570 ASK 572
           +SK
Sbjct: 751 SSK 753


>gi|71906757|ref|YP_284344.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Dechloromonas aromatica RCB]
 gi|71846378|gb|AAZ45874.1| ATP-dependent RNA helicase CsdA [Dechloromonas aromatica RCB]
          Length = 606

 Score =  303 bits (776), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 161/606 (26%), Positives = 266/606 (43%), Gaps = 44/606 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   + + + L++ GY   + +Q   +   L   D++  AQTG+GKT AF L L
Sbjct: 5   VESFADLGLSETLLQTLTQIGYETPSPIQAQCIPVLLEGHDLIGMAQTGTGKTAAFALPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  +       + P AL + PTRELA+QV   L+           +   GG S   +
Sbjct: 65  MEQIDVK------LTKPQALILTPTRELAIQVAEALQTYAKNLPGFHVLPIYGGQSYTIQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L  GAH++VGTPGR+ DH+  K LN+ HLK +VLDEADEML +GF DD+E+IL+ +P
Sbjct: 119 LKQLSRGAHVIVGTPGRVMDHLERKTLNLDHLKTMVLDEADEMLRMGFIDDVEWILERTP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +  +FSAT+   I  +A+ Y  +   + I S     + I      V+   + +A+  
Sbjct: 179 AQHQTALFSATMPEQIRRVAQKYLVEPREIKIKSATATVAAIRQVYWQVSGMHKLDALTR 238

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           I         AI+F  T+ +       L+   +   AL+G+L+QQ R   ++ ++ G   
Sbjct: 239 ILEVEEDFDAAIIFVRTKTATVELADKLSARGYAAAALNGDLNQQMRERVIEQLKSGALD 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+P +  V++ ++  + E  +HR GRTGRAGR G ++  +     R  
Sbjct: 299 IVIATDVAARGIDVPRVSHVVNYDIPYDTEAYVHRIGRTGRAGRTGNAILFVAPREIRML 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-DEKKMVDVLLAKHD--- 412
             + R     +     PS   +  +         + + + +G D    +   +A+     
Sbjct: 359 RTIERATRSPIAPLTLPSRADVTNKRVADFKSKVVEVLNAEGLDFFSNIVSQIAEEQNVG 418

Query: 413 PEKIAAGFLRIHRAGLC------------------APEEITPVSLVSGRDRFRDDSRAFK 454
            E++AA    + + G                      E           DR R + R  +
Sbjct: 419 AEEVAAALAMMAQEGKPLQIAGEDPRPAPAPRPGSFGESDRKPRFEDRGDRPRFEDRGER 478

Query: 455 VGGGSRDNF----KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
                R            + + VG     E R ++  +   +GI  + IG I +  D + 
Sbjct: 479 PRREDRPARQAPAGDMVRYRIDVGRDHGVEVRDIVGAIANEAGIESRFIGRIGLYEDSST 538

Query: 511 VEV----SADGVDLLRRTVKLDKGIQLKYL----GGEKPDFRGYKSSGFKSKNSQDGATK 562
           VE+     A+  + L+RT      I L+      G         K  G   K   D    
Sbjct: 539 VELPAGMPAEASNALKRTRIRGVPINLRPDEGRPGAGGAGGGERKFGGGDRKPEGDRGGF 598

Query: 563 RFKRFK 568
           + K+F 
Sbjct: 599 KKKKFG 604


>gi|319950441|ref|ZP_08024356.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
 gi|319435905|gb|EFV91110.1| ATP-dependent DEAD-box RNA helicase DeaD [Dietzia cinnamea P4]
          Length = 679

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 163/578 (28%), Positives = 275/578 (47%), Gaps = 30/578 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   + +A+ + GY   +++Q A +   L  +DV+  AQTG+GKT AF L + S
Sbjct: 50  TFADMGLAPAVAKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILS 109

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +           +P AL +APTRELA+QV        A    V  +   GG +   +  
Sbjct: 110 LIDPS------VKSPQALILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLS 163

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I+VGTPGR+ DH++   L++S L+ +VLDEADEML +GF++D+E IL  +P+ 
Sbjct: 164 GLRRGAQIIVGTPGRVIDHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPES 223

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++ +FSAT+  AI  +++ Y  D   V +AS+      I  R VLV   D+ +A+  IL
Sbjct: 224 TQVALFSATMPSAIRRISQKYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRIL 283

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+++     + L    F    ++G++ Q  R   ++ ++DGR  + +
Sbjct: 284 EVEDFDAMIMFVRTKSATEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILV 343

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R   ++
Sbjct: 344 ATDVAARGLDVPRISHVVNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQI 403

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+ + E    +  Q     +S+      +   L+ ++  E     
Sbjct: 404 ERATRQPLTEVQLPSVDDVNEMRMAKFAQS--ITESLDDPNIALFRRLVEEYASEHSVSM 461

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRD------RFRDDSRAFKVGGGSRDNFKGSS 467
             IAA      R                 R       R    +R F  G     + K  +
Sbjct: 462 ADIAAALATQSRNSDEFLMREPERPQRRERQDDRGGDRRDRPARNFSDGPRPSRSGKDMA 521

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            + ++VG +   +   +M  L   +G++   IG I ++ D + VE+ A        ++  
Sbjct: 522 QYRIAVGKRNNVKPGSIMGALANEAGLSGGDIGRISIRFDHSIVELPAGLPSDQLESM-- 579

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
            KGI++   GG + D R   S     + S     +  K
Sbjct: 580 -KGIRV---GGAEIDIRP-DSGAPAGRPSSFRDDRGGK 612


>gi|227495476|ref|ZP_03925792.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
 gi|226831023|gb|EEH63406.1| superfamily II helicase [Actinomyces coleocanis DSM 15436]
          Length = 616

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 164/595 (27%), Positives = 271/595 (45%), Gaps = 39/595 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+P+ +  A++E G+   T +QE  +   L  +D++  AQTG+GKT AFGL +
Sbjct: 4   MTTFADLNLPENVLSAITEMGFETPTPIQEQAIPHLLEGRDIVGIAQTGTGKTAAFGLPM 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
            + +          +A  A+ +APTRELA+Q    +E   A    V  V   GG S   +
Sbjct: 64  LAHIDP------GFNAVQAIVLAPTRELAMQSATAIESFAAHMPKVKVVTVYGGASYTPQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++GA +VVGTPGR+ D I    L ++++  +VLDEADEML +GF +D+E I  S P
Sbjct: 118 IKGLKSGAQVVVGTPGRVIDLIEKGALKLNNVSVLVLDEADEMLRMGFAEDVETIAASMP 177

Query: 178 KKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +  + +   FSAT+   I  +A  +  D VR+ +A ++    +I     +V    +  A+
Sbjct: 178 ESGKRITALFSATMPDFIQRVADQHLTDPVRIEVARQSSTVENIHQTYAVVPFKHKLGAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF  TR         +A   F   A+SG++SQ ER   +  +RDG  
Sbjct: 238 GRVLATRDEDAAIVFVRTRVDADEVAVDMATRGFTAAAISGDVSQNERERIVSRLRDGSL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  + LVI+ ++    E  +HR GRTGRAGR G S+       Q R
Sbjct: 298 DVLVATDVAARGLDVERIGLVINFDVPRETEAYVHRVGRTGRAGRAGRSLTFFTPKEQFR 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDV-LLAKH 411
             ++ +     +     PS   + E  A+R   ++ D + L  ++     + ++    + 
Sbjct: 358 LRQIEKLTGTKMEEIVIPSPREVSEFRARRLVSLMPDRIELGRLELYYDLLHEIRHTTEI 417

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF------------------ 453
           + E IAA  L          +E    +    R+   DD   F                  
Sbjct: 418 EVEDIAAALLAHAIGDKGPSQEERRGAGKIRREEEIDDDGNFVAASFEAGRDGGKGGRAK 477

Query: 454 --KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             K     R +   S  + + VG +   +   ++  +    G+N   +G I + P  + V
Sbjct: 478 GAKRPSAPRISSGFSRRYRVEVGKRDGVKPGAIVGAITGEGGVNGADLGRIDIYPTFSLV 537

Query: 512 EVSAD----GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
           E+S +        + +     + +++K   G +P   G      +  +    A +
Sbjct: 538 ELSGELSEKAASKISKAFVSGRQLRIKEDTGPRPAAEGGDRGDRRGASRGRSADR 592


>gi|238925630|ref|YP_002939147.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|238877306|gb|ACR77013.1| DEAD/DEAH box helicase-like protein [Eubacterium rectale ATCC
           33656]
 gi|291524137|emb|CBK89724.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
           17629]
 gi|291527820|emb|CBK93406.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 530

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 156/545 (28%), Positives = 272/545 (49%), Gaps = 30/545 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I   + + G+   T +Q   +   L  +DV+  AQTG+GKT AFG+ +  ++ A 
Sbjct: 10  ELNPKILRGIKDMGFEEATPIQAQGIPAVLSGRDVIGQAQTGTGKTAAFGIPVLESVDAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           + +         + ++PTRELA+QV  E+  L      V  +   GG  + R+ + L+ G
Sbjct: 70  SHK------TQVIILSPTRELAIQVADEIRKLAKYMHGVKVLPVYGGQDISRQIKALKGG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGRL DH+R K +   H+K +VLDEADEML++GFR+DIE +L+  P++ + ++
Sbjct: 124 VQIIIGTPGRLMDHLRRKTIRPDHVKTIVLDEADEMLNMGFREDIETVLEYLPQEHQTVL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + + YQ DA+ + I  +    ++ID     V   D+ + +  +L Y+  
Sbjct: 184 FSATMPKPILEITRKYQHDAINIKIVKKELTVANIDQYYYDVKRKDKIDVLTRLLDYYNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V      L    +    L G++ Q +R   ++  R+G+  + IATDVA
Sbjct: 244 KLSLVFCNTKKMVDELAYELCGRGYSAEGLHGDMKQVQRDRVMKNFRNGKTDILIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + +L  + E  +HR GRTGRAGR G +   +      + + + R   
Sbjct: 304 ARGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRCGKAFSFVKGKEVYKLKDIQRYCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAG 419
             +  +P PS + + +  A++I+ D +     + +   ++D++        +    IAA 
Sbjct: 364 TKIYAQPIPSSDDVAKIRAEKIM-DQISTIIDEENLTSVIDIIENQINESDYTAMDIAAA 422

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           FL             + +S    +D +            +     G     ++VG K K 
Sbjct: 423 FLYQAMGA-------SEISTAESKDDYD---------FHNTGAEDGMVRLFINVGKKDKI 466

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           +   ++  +   SG+  + +GAI +    TFVEV A+    +   +K  K I+ + +  E
Sbjct: 467 KPGDILGAIAGESGMPGRLVGAIDMYDKYTFVEVPAEYGKEVLNAMKNAK-IKGRSVNME 525

Query: 540 KPDFR 544
             + R
Sbjct: 526 PANSR 530


>gi|303251558|ref|ZP_07337732.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649556|gb|EFL79738.1| cold-shock DEAD box protein-A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 619

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 157/619 (25%), Positives = 274/619 (44%), Gaps = 54/619 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I +A+++ G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L +
Sbjct: 7   TFADLGLPQSILDAVNDMGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L +APTRELA+QV    E        V  V   GG     + R
Sbjct: 67  QIDPTK------RHPQMLVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ +VVGTPGR+ DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+ 
Sbjct: 121 ALKQGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPEN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  + + + +D   V I +  R   DI     LV    +++A++  L
Sbjct: 181 HQTALFSATMPEPIRRITRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F  T+      T++   + ++  AL+G+++QQ R   L  ++ GR  + +
Sbjct: 241 EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 301 ATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ E +  +  ++    +   L    ++   + + D+  A  D E++
Sbjct: 361 EHLMKKPIDEVAIPNHEILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEEL 420

Query: 417 AAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AA  + + +          P               DR               +N      
Sbjct: 421 AAAMMMMLQEKQKLILPPDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDL 480

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RR 523
           + + +G +   E R ++  +     I+ + IG I++    + +E+     + +     ++
Sbjct: 481 YRIELGREDGVEVRHIVGAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQK 540

Query: 524 TVKLDKGIQLKYLG-----GEKP------------------------DFRGYKSSGFKSK 554
              L+K +Q+  L        +P                             +  GF  +
Sbjct: 541 ARVLNKQMQMSLLSPAGGVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDR 600

Query: 555 NSQDGATKRFKRFKGASKN 573
                  KRF       ++
Sbjct: 601 KKGGFKEKRFNDKGRGRRD 619


>gi|111219903|ref|YP_710697.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
 gi|111147435|emb|CAJ59085.1| cold-shock DeaD box ATP-dependent RNA helicase [Frankia alni
           ACN14a]
          Length = 608

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 155/546 (28%), Positives = 262/546 (47%), Gaps = 16/546 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  +L+  GY   T +Q   + P +  +D+L  A TG+GKT AF L L   L  + 
Sbjct: 64  LRPELLRSLAALGYEEPTPIQREAVPPLVAGRDLLGQAATGTGKTAAFALPLLHRLTDDR 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELAVQV   +       G  V    GG  + R+ R L  G  
Sbjct: 124 ---TGDHGPQALVLVPTRELAVQVSEAIHRYGRDLGARVLPVYGGAPIGRQVRALVQGVD 180

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DH+    L +  L  VVLDEADEMLD+GF +DI+ IL+ +P+KR+ ++FS
Sbjct: 181 VVVATPGRALDHMGRGTLRLDGLHTVVLDEADEMLDMGFAEDIDAILEQAPQKRQTVLFS 240

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P +  +A+ + +D VR+ I     +      +   + +V  + +  A+  IL    
Sbjct: 241 ATLPPRMDQIARRHLRDPVRIQIGRAAPEPGAAPLVRQVSYVVPRAYKTAALGRILDVES 300

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVFC TR  V +    L    ++  +L G +SQ++R   ++ +R   A + +ATDV
Sbjct: 301 PRSAIVFCRTREEVDQLADSLNGRGYRAESLHGGMSQEQRERVMERLRTATADLLVATDV 360

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D   L  V++  + S P++ +HR GR GRAGR+G+++ +      R  + + R  
Sbjct: 361 AARGLDFEQLTHVVNYSVPSAPDSYVHRIGRVGRAGREGVAITLAEPREHRMLKTIERVT 420

Query: 364 NVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +  E  P+V  +  R  +     LQ+ L  D ++   + +V+ L  + DP +IA   
Sbjct: 421 RQRIAVEKVPTVADLHARRLELTRAALQESLLEDDLE-RFRVVVETLTDEFDPMEIALAA 479

Query: 421 LRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +++       P +   +  +      R        A +     R    G +   +  G  
Sbjct: 480 VKLAHDASFVPNDADDIPDLPPATDARGERTGRDGAGRRERRPRPASGGMARLFVGAGRG 539

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLK 534
                + L+  +   + ++ + IGAI +    + VEV     D +  +++    KG ++ 
Sbjct: 540 AGVRPQDLVGAITGETRLSGRDIGAIEIAQRFSLVEVPDGAADEVIASLRGSTIKGRRVA 599

Query: 535 YLGGEK 540
                +
Sbjct: 600 IRRERQ 605


>gi|225374820|ref|ZP_03752041.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
 gi|225213389|gb|EEG95743.1| hypothetical protein ROSEINA2194_00440 [Roseburia inulinivorans DSM
           16841]
          Length = 531

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 151/538 (28%), Positives = 266/538 (49%), Gaps = 36/538 (6%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   F+ +     +  A+ E G+   T +Q   +   +   DV+  AQTG+GKT +FG+
Sbjct: 1   METVRFDELDLYPQVLRAIKEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVH 115
            +   +   N +         + ++PTRELA+QV  E+  L     GV +    GG  ++
Sbjct: 61  PVLHKVDPNNKK------TQVIILSPTRELAIQVSEEIRKLSKYMHGVKILPVYGGQDIN 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L+ GA I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+ 
Sbjct: 115 RQIKALKGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEY 174

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P++ R  + FSAT+   I  + K YQ DAV + +  +      I+     V   D+   
Sbjct: 175 IPEEGRQTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPSIEQYYYDVKRKDKTEV 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L Y+  K ++VFC+T+  V   ++ L    +    L G++ Q +R   ++  R GR
Sbjct: 235 LTRLLDYYNPKLSLVFCNTKKMVDELSEELKSRGYMAEGLHGDMKQAQRDRVMKAFRSGR 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      
Sbjct: 295 VEILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVY 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---- 410
           + + + R     ++  P PS + + +  A++++Q     + I+ ++ K +  ++ K    
Sbjct: 355 KLKDIMRYCKTKILAMPIPSSDDVAQIKAEKVMQ--GIGEIIENEDLKEMIEIIEKQVND 412

Query: 411 --HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             +    IAA FL+     +                   +D    ++   +    +G   
Sbjct: 413 SDYTAMDIAAAFLKQALGQVNL----------------ENDRENGEIDWDNTGAEEGMVR 456

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             +++G K + +   ++  +   SG+  + +GAI +    TFVEV  +    +   +K
Sbjct: 457 LFINIGKKDRVKPGDILGAIAGESGMPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMK 514


>gi|24375521|ref|NP_719564.1| ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
 gi|24350394|gb|AAN57008.1|AE015835_4 ATP-dependent RNA helicase DeaD [Shewanella oneidensis MR-1]
          Length = 623

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 166/605 (27%), Positives = 281/605 (46%), Gaps = 49/605 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+ ++   L+ G 
Sbjct: 67  -KVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P +R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + K+A  ++IA+ +     I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ +++G+  + IATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLA-KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +       + ++   + +  +    + D + +AA  L 
Sbjct: 366 RISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAVAQLCQQLEVDTDLLAAALL- 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-----------------GSRDNFKG 465
            H+     P ++  +      +R     R    G                  GS +  K 
Sbjct: 425 -HQVQQERPLQLPAIQERVRDERSERSERGSDRGAERGERRSRESRPMPASLGSAEALKD 483

Query: 466 -----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SAD 516
                   + + VG +       ++  +   + I+ + IGAI++   +T V++      D
Sbjct: 484 NPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGMPKD 543

Query: 517 GVDLLRRTVKLDKGIQLKYLGGE--KPDFRG--------YKSSGFKSKNSQDGATKRFKR 566
            +  L++     K + ++  G +      RG                K       K F  
Sbjct: 544 VLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRSDRPAGDRKPRAASGDKPFAD 603

Query: 567 FKGAS 571
            K  S
Sbjct: 604 RKPRS 608


>gi|15836857|ref|NP_297545.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9105065|gb|AAF83065.1|AE003878_13 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 151/602 (25%), Positives = 281/602 (46%), Gaps = 46/602 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +
Sbjct: 16  LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLT 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
             +    +      P  L +APTRELA+QV    +   A  +G  V    GG S  ++  
Sbjct: 76  RTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  
Sbjct: 130 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL
Sbjct: 190 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +
Sbjct: 250 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++
Sbjct: 310 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQI 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD--PE 414
            R  +  +     PSV+A+ +    +    + + L + +     +K++    ++H+    
Sbjct: 370 ERATHQPIEAMQLPSVDAVNDTRVAKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAI 429

Query: 415 KIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDS---------------RAFKV 455
           +IAA   R+ +      L  P            +  +  S               R  + 
Sbjct: 430 EIAAALARLLQGDSPFLLSVPTRAQRERSEPPSEHVKRSSSFKQTERPNHTEHPKRPQRN 489

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
                    G   + + VG     +   ++  +   +G+  + IG I ++ D + +++ A
Sbjct: 490 APARNTPEFGMESYRIEVGRIHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLPA 549

Query: 516 DG----VDLLRRTVKLDKGIQLKYLGGE---------KPDFRGYKSSGFKSKNSQDGATK 562
           +     +  L++     + +Q++ +            K    G      K  +++    K
Sbjct: 550 EMPHEILQHLKKVWVSGQQLQMRRIDTTETTATAREFKSKPGGAGKFPPKPHHNKSTKPK 609

Query: 563 RF 564
             
Sbjct: 610 PP 611


>gi|210614158|ref|ZP_03290078.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
 gi|210150802|gb|EEA81810.1| hypothetical protein CLONEX_02291 [Clostridium nexile DSM 1787]
          Length = 530

 Score =  303 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 156/534 (29%), Positives = 265/534 (49%), Gaps = 31/534 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+     I +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L   
Sbjct: 6   FENLGLCSEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N +         + + PTRELA+QV  E+  L      +  +   GG  + ++ R 
Sbjct: 66  VDPKNKK------LQGIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIE IL   P++R
Sbjct: 120 LKSGTQIIIGTPGRVMDHMRRKTIKMDQVHTVVLDEADEMLNMGFREDIETILSGVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  + K +QK+A  V +  +     +I+     V   +++  +  +L 
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKNAQMVKVTKKELTVPNIEQFYYEVRPKNKEEVLTRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K +++FC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +A
Sbjct: 240 IYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + 
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEK 415
           R     +  +  PS++ +     + IL+D   +   + D   MV+ + +K     +    
Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMENILEDIDRIIETE-DLTAMVNAIESKVNGSDYTAMD 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA FL++                 +G     D S      G +     G     +++G 
Sbjct: 419 IAAAFLKM----------------CTGMTMSDDGSAEDMDFGDTGAEEPGMVRLFINIGK 462

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           KQKA+   ++  L   +G+  + IG I +    TFVEV  +    +   ++  K
Sbjct: 463 KQKAKPGDILGALAGETGMPGKLIGTIDMFDKYTFVEVPREYAKDVLHAMQNAK 516


>gi|302388261|ref|YP_003824083.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198889|gb|ADL06460.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 572

 Score =  303 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 153/561 (27%), Positives = 271/561 (48%), Gaps = 33/561 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ G+   + +Q   +      +D++  AQTG+GKT AFG+ L   +  + 
Sbjct: 24  LDERILRAVADMGFEEASPIQAQAIPVQAEGRDIIGQAQTGTGKTAAFGIPLLQKIDPK- 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     A+A+ PTRELA+QV  E+  L      V  V   GG  + ++ R L++G 
Sbjct: 83  -----VKKLQAVALCPTRELAIQVADEIRRLAKYMHGVKVVPIYGGQDIVKQIRSLKDGT 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DH+R K +   H+  V++DEADEML++GF +D+E IL   P++R+ +MF
Sbjct: 138 QIIIGTPGRVMDHMRRKTVKFDHVHTVIMDEADEMLNMGFLEDMETILSQLPEERQTVMF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ +Q+D V V +  +      +      V    +   +  +L  +  K
Sbjct: 198 SATMPPAIMEIARKFQQDPVTVKVVKKELTVPKVTQYYYEVKPKSKVEVMCRLLDMYAPK 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++ FC+T+  V    + L    +    L G+L Q +R   +   R+G+  + +ATDVAA
Sbjct: 258 LSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQIQRDRVMGSFRNGKTEILVATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + +L  + E  +HR GRTGRAGR+G++   +      +   + R    
Sbjct: 318 RGIDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGREGIAFSFVVGKEVYKLRDIQRYCKT 377

Query: 366 SVVWEPAPSVEAIRERDAQRILQ-------DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +V +  PS+  +      +IL+       D     ++   EKK+++     +    +AA
Sbjct: 378 KIVPQAIPSLNDVTAIKVDKILETVADTIGDTDLSKTVNIIEKKLLE---EDYTSLDLAA 434

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRD-------------DSRAFKVGGGSRDNFKG 465
             L++        E+I         D   +             +      GG    +   
Sbjct: 435 ALLKMMMGEEN--EDIIDTREPRSLDELDNFYGGGSRGRSSGRNGSGSSRGGRYDSSRDD 492

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G  Q  +   ++  +   SG+  + +G+I +    TFVEV  +  D + + +
Sbjct: 493 MARLFINIGKNQNVKPGDILGAIAGESGMPGKMVGSIDMYDKYTFVEVPRENADAVLQAM 552

Query: 526 KLDKGIQLKYLGGEKPDFRGY 546
           K  K I+ K +  EK + +G 
Sbjct: 553 KDVK-IKGKNIHMEKANGKGR 572


>gi|220913497|ref|YP_002488806.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860375|gb|ACL40717.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 694

 Score =  303 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 261/545 (47%), Gaps = 11/545 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF +   S L   +D   
Sbjct: 61  VLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAAFAVPALSRLAELHDLNG 120

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
           P+    AL +APTRELA+QV                +   GG +   +   L+ GA +VV
Sbjct: 121 PSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGSAYGPQLAGLRRGAQVVV 180

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DHI    L++S L+ +VLDEADEML +GF +D+E I   +P+ R++ +FSAT+
Sbjct: 181 GTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQIFQQTPEDRQVALFSATM 240

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  ++K Y  D   +++ ++    ++I  R + +    + +A+  IL        I 
Sbjct: 241 PGQIRRMSKQYLNDPAEISVKTKTSTGTNIRQRYLQIMGPQKLDAMTRILEVEEFDGVIA 300

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L    FQ  A++G++ QQ+R   +  +++GR  + +ATDVAARG+D
Sbjct: 301 FVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKEGRIDILVATDVAARGLD 360

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + +    SV  
Sbjct: 361 VERISHVINYDIPHDTESYVHRIGRTGRAGRNGDAILFMTPREKYLLRAIEKATRQSVEQ 420

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK----IAAGFLRIHR 425
              P+ E +      +  +     +++  ++  M   L+A ++ E               
Sbjct: 421 MHLPTAETVNTLRLGKFAER--ITETLASEDVSMFRDLIASYEEEHKVPAAEIAAALAVM 478

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           A    P  +  ++      +       F   G SR   +G++ + ++VG +Q+     ++
Sbjct: 479 AQGGQPLLVKELAAAPDFQKRERSKDGFGSRGPSRQLTEGNATYRIAVGRRQRVMPGSIV 538

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGGEKP 541
             +    GI+   IG I ++ D + VE+ AD     +  L RT    + I L+   G KP
Sbjct: 539 GAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRIGGELIHLELDNGRKP 598

Query: 542 DFRGY 546
                
Sbjct: 599 SGDRG 603


>gi|332703129|ref|ZP_08423217.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553278|gb|EGJ50322.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 151/547 (27%), Positives = 259/547 (47%), Gaps = 31/547 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + + +A+ + G+   + +Q   +   +  +DV+  AQTG+GKT AFG+ +   
Sbjct: 6   FESLTLSKEMLKAIEDMGFEEASPIQALAIPLVMAGRDVVGQAQTGTGKTAAFGIPILEA 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +   +          AL + PTRELA+QV  EL  L      + V    GG  + R+ + 
Sbjct: 66  VDPRSHD------LQALVLCPTRELAIQVAEELNTLAKYKLNLRVLPVYGGQPIDRQFKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+GTPGR+ DH+    L +  ++ VVLDEADEMLD+GFR+DIE ILD  P++R
Sbjct: 120 LRQGVQIVIGTPGRVMDHMERGTLKLGKVRMVVLDEADEMLDMGFREDIERILDDVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSAT+ P I  LA+ Y      V ++ +     +++     V    R  A+  I+ 
Sbjct: 180 QTIFFSATMRPEIMRLAEKYLDKPEFVKVSHKVLTVPNVEQIYYEVPRFGRLEAMCRIID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  K  +VF +T+  V    + L    +    L G+++Q +R   +   R G   + IA
Sbjct: 240 FYNPKLTVVFANTKKGVDELVEHLQARGYMADGLHGDMNQAQRDRVMAKFRAGSIEILIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + ++ S+ E  +HR GRTGRAGR G +          +   + 
Sbjct: 300 TDVAARGIDVEDIEAVFNYDIPSDVEYYVHRIGRTGRAGRSGRAFTFASGKEFYKLRDIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPE--K 415
           R     +V    P+V  + +   ++ L   ++ +    I    +   + +  + +     
Sbjct: 360 RFTKAKIVQHKVPTVTDVEQARTEKFLAAVRETIAEGGIDKYLRIAQEFVEEEQEATTLD 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +AA  L++       PE+  P                  V  G      G     ++VG 
Sbjct: 420 LAAALLKMLMGTTEEPEKSKP---------------GTPVKYGDTGAEPGMVRLFMNVGR 464

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQL 533
           + K   + ++  +   +G+  + IG I +    TFVEV  +  + + R +  +  +G ++
Sbjct: 465 RLKIGVKDVVGAIAGETGMPGRLIGKIEIYDKFTFVEVPEEYAEDVLRIMSNNQIRGNRI 524

Query: 534 KYLGGEK 540
                 K
Sbjct: 525 YIEPAVK 531


>gi|114775697|ref|ZP_01451265.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114553808|gb|EAU56189.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 628

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 170/612 (27%), Positives = 282/612 (46%), Gaps = 53/612 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ ++GY N T +Q A +   L  +DVL  AQTG+GKT AF L L S +  + 
Sbjct: 12  LSEPVLKSIKDQGYENATPIQAATIPLLLEGRDVLGQAQTGTGKTAAFALPLLSMIDIDQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    +           +   GG S   + R L+ GA
Sbjct: 72  ------RDPQVLVLAPTRELAIQVAEAFQQYAHHIKGFHVLPIYGGQSYDIQLRQLKRGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHIR K LN+S LK +VLDEADEML +GF DD++++L+  P++R++ +F
Sbjct: 126 HVVVGTPGRVMDHIRRKTLNLSGLKTLVLDEADEMLRMGFIDDVKWVLEQLPEQRQIALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+++ K+   V I  +      I  R  +V+  ++ +A+  IL +    
Sbjct: 186 SATMPAVIRKIAQSHLKNPQHVTIKDKTTTAPTIRQRFWMVSGRNKIDALTRILEFEPFD 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L    +   AL+G++ Q +R   +  ++ G+  + +ATDVAA
Sbjct: 246 GMIIFVRTKTATDEVAERLEARGYAASALNGDVKQSQREQIVNRLKSGKIDIVVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +  N 
Sbjct: 306 RGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRKGDAILFVAPREKRMLYSIEKATNQ 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            V     P+ E I         Q     D++  D  ++   ++ +++ E      +IAA 
Sbjct: 366 RVEQLEMPTTEDINNLRIADFKQR--ISDTLAADGLELFAGIVEQYEQEHNVPAQEIAAA 423

Query: 420 FLRIHRA----------GLCAPEEITPVSLVSGRDRFR-----------------DDSRA 452
              + +           G     E  P       D+ R                 D  R 
Sbjct: 424 LAFLAQGDKPLLIKDVPGTRPQREARPARFEEPEDKRRSMRNLRSERVEDFTAADDKPRR 483

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            K         +G   + L VGS   AEAR ++  +    G+  + IG I +    + V+
Sbjct: 484 EKPRREIGAPERGKDRYRLEVGSNHGAEARNIVGAIANEVGLESEFIGQIHIADTYSTVD 543

Query: 513 VSADGVDLLRRTVK------LDKGIQLKYLGGE---KPDFRGYKSSGFKSKNSQDG--AT 561
           +       + + +K            L+  GG    +P  R     G   + ++ G    
Sbjct: 544 LPEGMPSAIFQQLKQLYVCGQQLNASLEETGGAGFKRPVKRKQFRPGDADRGAKRGPAGG 603

Query: 562 KRFKRFKGASKN 573
           KR     G  K 
Sbjct: 604 KRAGGHAGPHKR 615


>gi|145219994|ref|YP_001130703.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206158|gb|ABP37201.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeovibrioides DSM
           265]
          Length = 598

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 165/581 (28%), Positives = 267/581 (45%), Gaps = 30/581 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL++ GY   T +Q   +   +  +DVL  AQTG+GKT AF L + S +   
Sbjct: 16  NLAEPVLRALADVGYETPTPIQARTIPLLIEGRDVLGQAQTGTGKTAAFALPILSNIDFS 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                 A+ P  L +APTRELA+QV                +   GG     + R L+ G
Sbjct: 76  ------ATEPQVLVLAPTRELAIQVAEAFHKYAEHLKGFHVLPIYGGQEYGSQLRMLKRG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+R   LN+  LK +VLDEADEML +GF DD+E+IL+ +P  R++ +
Sbjct: 130 VHVVVGTPGRVMDHMRKGSLNLHSLKCLVLDEADEMLRMGFIDDVEWILEQTPSDRQVAL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ Y  D   V I ++      I  R  +V  S + + +  IL     
Sbjct: 190 FSATMPAPIRRIAQKYLNDPAEVTIQAKTTTVDTIRQRYWIVGGSHKIDILTRILEVEPF 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+       + L    +   AL+G++ QQ+R   +  ++ G   + IATDVA
Sbjct: 250 DGMIIFVRTKTMTLEIAEKLQARGYSAAALNGDMVQQQRERTIDQLKSGALNIVIATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + R   
Sbjct: 310 ARGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPRERNMLSSIERATR 369

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAGF 420
             +     PS E I ++   +  Q     D+I  ++     ++V+    +HD  ++ A  
Sbjct: 370 KKIELMELPSTEIINDKRIAKFKQR--ITDTIAAEDLAFFTRLVEQYCHEHDVAEVEAAA 427

Query: 421 LRIHRAGLCAP--------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
                     P        +   PV    G     D     K         +    + + 
Sbjct: 428 ALASMVQGDTPLLFTAKPAKAERPVRREMGERSRDDAPFRKKARRDDMYGDERREVYRIE 487

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK--G 530
           VGS    +A  ++  +    G++ ++IG I +  D + VE+ +   + +   ++  +  G
Sbjct: 488 VGSGHGVQAGNILGAIINEIGLDPEAIGRISIGDDYSTVELPSGMPNDVMHDLRKVRVCG 547

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            QL+    E  D  G  +   K         KR  RF G S
Sbjct: 548 RQLRVSKMESRDSAGAYAGVGK-------GAKRPSRFPGKS 581


>gi|182680762|ref|YP_001828922.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|182630872|gb|ACB91648.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579229|gb|ADN63198.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 609

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 283/606 (46%), Gaps = 45/606 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +
Sbjct: 10  LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLT 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
             +    +      P  L +APTRELA+QV    +   A  +G  V    GG S  ++  
Sbjct: 70  RTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  
Sbjct: 124 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +
Sbjct: 244 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD--PE 414
            R  +  +     PSV+A+ +    +    + + L + +     +K++    ++H+    
Sbjct: 364 ERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAI 423

Query: 415 KIAAGFLRIHR--------------------AGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +IAA   R+ +                    A     +  +        +      R  +
Sbjct: 424 EIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKRPQR 483

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                     G   + + VG     +   ++  +   +G+  + IG I ++ D + +++ 
Sbjct: 484 NAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLP 543

Query: 515 ADG----VDLLRRTVKLDKGIQLKYLG----GEKPDFRGYKSSG---FKSKNSQDGATKR 563
           A+     +  L++     + +Q++ +              K  G   F  K   + +TK 
Sbjct: 544 AEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKSTKP 603

Query: 564 FKRFKG 569
              + G
Sbjct: 604 KPPYSG 609


>gi|28198133|ref|NP_778447.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|28056193|gb|AAO28096.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 615

 Score =  303 bits (774), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 283/606 (46%), Gaps = 45/606 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +
Sbjct: 16  LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLT 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
             +    +      P  L +APTRELA+QV    +   A  +G  V    GG S  ++  
Sbjct: 76  RTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  
Sbjct: 130 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL
Sbjct: 190 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +
Sbjct: 250 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++
Sbjct: 310 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQI 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD--PE 414
            R  +  +     PSV+A+ +    +    + + L + +     +K++    ++H+    
Sbjct: 370 ERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAI 429

Query: 415 KIAAGFLRIHR--------------------AGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +IAA   R+ +                    A     +  +        +      R  +
Sbjct: 430 EIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKRPQR 489

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                     G   + + VG     +   ++  +   +G+  + IG I ++ D + +++ 
Sbjct: 490 NAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLP 549

Query: 515 ADG----VDLLRRTVKLDKGIQLKYLG----GEKPDFRGYKSSG---FKSKNSQDGATKR 563
           A+     +  L++     + +Q++ +              K  G   F  K   + +TK 
Sbjct: 550 AEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKSTKP 609

Query: 564 FKRFKG 569
              + G
Sbjct: 610 KPPYSG 615


>gi|149913402|ref|ZP_01901935.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
 gi|149812522|gb|EDM72351.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. AzwK-3b]
          Length = 662

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 278/559 (49%), Positives = 365/559 (65%), Gaps = 21/559 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL  +GY +LT+VQEA+  P+L  KD+LVSAQTGSGKT+ FGLA+A  L  E + 
Sbjct: 3   QALANALKAQGYTSLTAVQEAVSAPELAGKDLLVSAQTGSGKTLGFGLAIAPGLFGEAES 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F PA+APLAL IAPTRELA+QV REL WL+ +   V+A  +GG+ +  ERR L+ GAHIV
Sbjct: 63  FGPAAAPLALVIAPTRELALQVKRELAWLFGQANAVLASTVGGMDMRDERRALERGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S LKAVVLDEADEMLDLGFR+D+EFIL+ +P +R+ L+FSAT
Sbjct: 123 VATPGRLRDHIMRGSIDLSALKAVVLDEADEMLDLGFREDLEFILEQAPIERQTLLFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA NYQKDA+R++ AS   QH+DI+YRA+ V+  D +NAI+N+LRY+ A NAI
Sbjct: 183 VPAAIAKLASNYQKDAIRISTASGTTQHADIEYRALNVSARDAENAIINVLRYYEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTTRLSNRSFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S  ++P   +++A+RL   A V   
Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKVKAE 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD +R+L    +   I+   +  V  L  +   E++AA F+R+ R   
Sbjct: 363 WADAPSADEVTARDDERMLAGTEWDAEIEDSNRATVAKLTERFSAEQLAAAFVRLFRERH 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++ VS                     R  F  S WFS+  G    AE R L+PML
Sbjct: 423 SAPEELSDVSAPPE----------------PRAAFGPSVWFSVEGGRAAGAEPRRLLPML 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKYLGGEKPDFR 544
           C+   ++R+ IGAIR+Q D++ VE+    V          + L+ G +L  L       R
Sbjct: 467 CKIGALSREDIGAIRIQNDVSLVEIRQSAVQGFLANVGSAMTLEGGAKLTRLDSAPASDR 526

Query: 545 GYKSSGFKSKNSQDGATKR 563
             ++    S      AT+ 
Sbjct: 527 APRAEKPVS-PKGKPATRP 544


>gi|325920710|ref|ZP_08182616.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
 gi|325548762|gb|EGD19710.1| ATP-dependent RNA helicase CsdA [Xanthomonas gardneri ATCC 19865]
          Length = 643

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 170/640 (26%), Positives = 285/640 (44%), Gaps = 78/640 (12%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQLK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G + +M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIEMYRDLLQRYESENNVPA 421

Query: 415 -KIAAGFLRIHRAG---------LCAPEEITPVSLVS----------------GRDRFRD 448
             IAA   ++ +             A EE  P                      R    D
Sbjct: 422 IDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPQRNERADRGDRGERPRFEPKFERGPRAD 481

Query: 449 DSRAFKVGGGSRDNFK----------------------GSSWFSLSVGSKQKAEARWLMP 486
             RA +     R  F                       G   + + VG     +   ++ 
Sbjct: 482 GERAARPPRAERPAFAGDGDGAERPRRDPVAPRGEPEVGMESYRIEVGHTHGVKPANIVG 541

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG---- 538
            +   +G+  + IG I +Q D + +++ AD     +  L++     + + ++ L      
Sbjct: 542 AIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAA 601

Query: 539 ---EKPDF-RGYKSSGFK--SKNSQDGATKRFKRFKGASK 572
               KP F R  K +G         D A    ++     +
Sbjct: 602 ASPSKPRFPRSGKPAGRPNGPNRPMDRAGAPHRKGPPKPR 641


>gi|296119482|ref|ZP_06838040.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967365|gb|EFG80632.1| putative cold shock DEAD-box protein A [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 658

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 155/562 (27%), Positives = 269/562 (47%), Gaps = 33/562 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+++ GY   + +Q   +   +  +DV+  AQTG+GKT AF L + S +    
Sbjct: 67  LPDKVQDAVAKVGYTTPSPIQAQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDVN- 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A  P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 126 -----ARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 180

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+++++ +F
Sbjct: 181 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALF 240

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y      V + SE R + +I  R +L A   + +A   IL      
Sbjct: 241 SATMPNSIRRLSKKYLNSPAEVTVKSEQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYD 300

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+       + L +  +   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 301 AMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 360

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 361 RGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 420

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     P+V+ +  +  +         + +   + ++   L+ K+        + IAA 
Sbjct: 421 RLEEMELPTVDEVNAKRKENFASQ--ITEVLGDGQMELFRGLVRKYSENNNVAMDDIAAA 478

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--------------SRDNFKG 465
                + G     +  P      R+R R +       G                R N   
Sbjct: 479 LAVKLQGGSDFLVKDMPAPKRDRRERDRFERDDRGGRGRDRGRRDRDDRGGRHERRNDGD 538

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLL 521
              + L VG +Q      ++  +    G++ +  G I +    T V++        +D L
Sbjct: 539 FDTYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITIAVGHTLVDLPKTMDPSVLDRL 598

Query: 522 RRTVKLDKGIQLKYLGGEKPDF 543
           R T    + I +K   G  P +
Sbjct: 599 RDTRISGQLINIKKDTGRPPRY 620


>gi|71898665|ref|ZP_00680835.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|71731612|gb|EAO33673.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
          Length = 609

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 149/603 (24%), Positives = 280/603 (46%), Gaps = 47/603 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +
Sbjct: 10  LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLT 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
             +    +      P  L +APTRELA+QV    +   A  +G  V    GG S  ++  
Sbjct: 70  RTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  
Sbjct: 124 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +
Sbjct: 244 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD--PE 414
            R  +  +     PSV+A+ +    +    + + L + +     +K++    ++H+    
Sbjct: 364 ERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAI 423

Query: 415 KIAAGFLRIHR--------------------AGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +IAA   R+ +                    A     +  +        +      R  +
Sbjct: 424 EIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKRPQR 483

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                     G   + + VG     +   ++  +   +G+  + IG I ++ D + +++ 
Sbjct: 484 NAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLP 543

Query: 515 ADG----VDLLRRTVKLDKGIQLKYLG---------GEKPDFRGYKSSGFKSKNSQDGAT 561
           A+     +  L++     + +Q++ +            K    G      K  +++    
Sbjct: 544 AEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKSGGAGKFPPKPHHNKSTKP 603

Query: 562 KRF 564
           K  
Sbjct: 604 KPP 606


>gi|113971754|ref|YP_735547.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886438|gb|ABI40490.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 622

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 165/595 (27%), Positives = 283/595 (47%), Gaps = 39/595 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+H++   L+ G 
Sbjct: 67  -KVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  +     L    + D + +AA  L 
Sbjct: 366 RISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALL- 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------------GSRDNFKG- 465
            H+     P ++  +   +  +R     R  + G                 GS +  K  
Sbjct: 425 -HQVQQERPLQLPAIQERTRDERNERSERGAERGERGERRSRESRPLPASLGSAEALKDN 483

Query: 466 ----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + + VG         ++  +   + I+ + IGAI++   +T V++      + 
Sbjct: 484 PDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPKEV 543

Query: 518 VDLLRRTVKLDKGIQLKYLGGEK-PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +  L++     K + ++  G +   D      S  + +  +    ++ +   G  
Sbjct: 544 LQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDK 598


>gi|114046038|ref|YP_736588.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887480|gb|ABI41531.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 622

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 165/595 (27%), Positives = 284/595 (47%), Gaps = 39/595 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+H++   L+ G 
Sbjct: 67  -KVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ +++G+  + IATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  +     L    + D + +AA  L 
Sbjct: 366 RISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALL- 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------------GSRDNFKG- 465
            H+     P ++  +   +  +R     R  + G                 GS +  K  
Sbjct: 425 -HQVQQERPLQLPAIQERTRDERNERSERGAERGERGERRSRESRPLPASLGSAEALKDN 483

Query: 466 ----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + + VG         ++  +   + I+ + IGAI++   +T V++      + 
Sbjct: 484 PDLKMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPKEV 543

Query: 518 VDLLRRTVKLDKGIQLKYLGGEK-PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +  L++     K + ++  G +   D      S  + +  +    ++ +   G  
Sbjct: 544 LQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDK 598


>gi|291537686|emb|CBL10798.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 530

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/539 (28%), Positives = 266/539 (49%), Gaps = 33/539 (6%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   F+ +     +  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+
Sbjct: 1   METVRFDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVH 115
            +   +   N +         + ++PTRELA+QV  E+  L     GV +    GG  + 
Sbjct: 61  PVLHKVDPNNKK------TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEIS 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L+ GA I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+ 
Sbjct: 115 RQIKALKGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEY 174

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P++ R  + FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   
Sbjct: 175 IPEEGRQTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEV 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L Y+  K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+
Sbjct: 235 LTRLLDYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGK 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      
Sbjct: 295 TEILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVY 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD 412
           + + + R     +V  P PS + + +  A++++++   +  +    D   +++  + + D
Sbjct: 355 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 414

Query: 413 --PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                IAA FL+     +                   D+ R       +    +G     
Sbjct: 415 YTAMDIAAAFLKQALGQINL-----------------DNDREDSFDFDNTGAEEGMVRLF 457

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +++G K + +   ++  +   SG+  + +GAI +    TFVEV  +    +   +K  K
Sbjct: 458 INIGKKDRVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMKNAK 516


>gi|58581173|ref|YP_200189.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84623095|ref|YP_450467.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58425767|gb|AAW74804.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367035|dbj|BAE68193.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 634

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 170/631 (26%), Positives = 284/631 (45%), Gaps = 69/631 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     +  A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSGAVMRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLNQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+K
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             IAA   ++ +             A E+  P       DR        K   G R + +
Sbjct: 422 IDIAAAMAKLLQGDAPFLLTPPVRGAREDAAPRERHQRADRGDRPRFEPKFERGPRADGE 481

Query: 465 -----------------------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
                                        G   + + VG     +   ++  +   +G+ 
Sbjct: 482 RAPRPPRGDDAGGERPRRDPVAPRGEPELGMESYRIEVGHSHGVKPANIVGAIANEAGLE 541

Query: 496 RQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF- 543
            + IG I +Q D + +++ AD     +  L++     + + ++ L          KP F 
Sbjct: 542 SRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPAKPRFP 601

Query: 544 RGYKSSGF--KSKNSQDGATKRFKRFKGASK 572
           RG K SG         D A    ++     +
Sbjct: 602 RGGKPSGRSNGPVRPMDRAGAPHRKGPPKPR 632


>gi|33865454|ref|NP_897013.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. WH 8102]
 gi|33632623|emb|CAE07435.1| probable ATP-dependent RNA helicase DeaD [Synechococcus sp. WH
           8102]
          Length = 598

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 155/553 (28%), Positives = 271/553 (49%), Gaps = 28/553 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 52  FSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERL---- 107

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S    P AL +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 108 --ASGQKTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRRGV 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ S L+++VLDEADEML +GF DD+E+IL+  P++R++++F
Sbjct: 166 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLF 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G +
Sbjct: 226 SATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGE 285

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 286 GVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAA 345

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R    
Sbjct: 346 RGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLERATGQ 405

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA------KHDPEKI 416
            +     P   AI +    R+   L +    +    +E  ++  LL       +  PE++
Sbjct: 406 PIEAMEVPGNSAINQGRLDRLHKRLSEAAHNERSYEEEAALLKELLQRIGTELELSPEQL 465

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD--------RFRDDSRAFKVGGGSRDNFKGSSW 468
           A   L +         +      +                + R  +    +R   +    
Sbjct: 466 AYAALSMAIGPDPLLRQKGDDEWIHNNQRRDRDRDRDRGGERRERRSDRPARAPEENMQR 525

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + + VG + + +   L+  +   +G+  ++IG I++  + +FV++      D  + LRR 
Sbjct: 526 YRVEVGHRDRVKPGNLVGAIAGETGLQGRAIGRIQIFDNHSFVDLPKGMPEDVFNSLRRL 585

Query: 525 VKLDKGIQLKYLG 537
             +++ +Q+    
Sbjct: 586 RVMNRELQITQAS 598


>gi|227832855|ref|YP_002834562.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182657|ref|ZP_06042078.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
 gi|227453871|gb|ACP32624.1| ATP-dependent RNA helicase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 669

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 156/562 (27%), Positives = 270/562 (48%), Gaps = 33/562 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + EA+S+ G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S +  E 
Sbjct: 70  LPDDVQEAVSKVGFTKPSPIQEETIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDTE- 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A  P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 129 -----ARYPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA 183

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 184 QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 243

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L+K Y  +   V + SE R + +I  R +L     + +A   IL      
Sbjct: 244 SATMPNSIRRLSKQYLNNPAEVTVKSERRTNDNITQRFLLTPHRHKMDAFTRILEVIDYD 303

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+ +       L E  +   A++G+++QQ+R   +  ++DGR  + +ATDVAA
Sbjct: 304 AIIVFCRTKHATEDVADSLKEAGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAA 363

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 364 RGLDVDRITHVVNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA 423

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAAG 419
            +     P+ + +  +  ++         S Q  +      ++ ++        + IAA 
Sbjct: 424 RLEEMDLPTADEVNAKRKEKFFAS--IGASQQDKQFDFFRDMVREYSAAENVAMDDIAAA 481

Query: 420 FLRIHRAGLCAPEEITPVS--------------LVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                + G     +  PVS                  R     D    +   G R     
Sbjct: 482 LAVQLQGGTDFLLKERPVSKKDRRERDRFERDGRGRDRGDRGRDRGGRERDRGPRRPDGD 541

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLL 521
              + L VG +Q      ++  L    G++ +  G I +    T V++  +     ++ L
Sbjct: 542 FETYRLDVGKRQNVRPGAIVGALANEGGLSSKDFGRITIAVGHTLVDLPKNLDPAVLERL 601

Query: 522 RRTVKLDKGIQLKYLGGEKPDF 543
           + T    + I+++   G  P  
Sbjct: 602 KDTRISGQLIKIQKDTGRPPRR 623


>gi|291562141|emb|CBL40957.1| Superfamily II DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 560

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 157/560 (28%), Positives = 272/560 (48%), Gaps = 30/560 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+++ G+   + +Q   +  ++   D++  AQTG+GKT AFG+ L   +  E
Sbjct: 10  NLDPRILRAVTDMGFEAASPIQAQAIPVEMEGHDMIGQAQTGTGKTAAFGIPLLMKMDPE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N +        A+ + PTRELA+QV  EL  L     G+ +    GG  + ++ R L+ G
Sbjct: 70  NRK------TQAMILCPTRELAIQVAEELRRLAKYMSGIKILPVYGGQEIVKQIRSLKGG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+VGTPGR+ DH+R K +    +  VVLDEADEML++GF +D+E IL   P++R+ +M
Sbjct: 124 VQIIVGTPGRVMDHMRRKTIRTDAIHTVVLDEADEMLNMGFLEDMETILGELPEERQTVM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +A+ +QKD   V +  +      +      V   ++   +  +L  +  
Sbjct: 184 FSATMPHAIAQIAQKFQKDPKMVQVVKKELTVPKVTQYYYEVKPRNKVEVMCRLLDLYSP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++ FC+T+  V    + L    +    L G+L Q++R   +   R+G   + +ATDVA
Sbjct: 244 KLSVAFCNTKKQVDELVQALQGRGYFAEGLHGDLKQEQRDRVMGSFRNGATEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  +   +   +   + R   
Sbjct: 304 ARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGRAFSLAVGSEVYKLRDIQRFCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL-----LAKHDPEKIAAG 419
             +V +P PS++ +    A++IL D         + ++M D++        +   ++AA 
Sbjct: 364 TKIVPQPIPSLDDVTAIKAEKILDDVQQHIGDDSNLERMTDIIEKRLLAEDYTSLELAAA 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG---------------GSRDNFK 464
           FL++        E+I             D        G                 ++   
Sbjct: 424 FLKMAMGD--DYEDIADEGRPLRDLDDLDRRGGRNDRGRNGRRRQRGDDEEYMDRKNARG 481

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +   +++G  Q  +   ++  +   SGI  + +G+I +    TFVEV  +  D++   
Sbjct: 482 GMTRLFINLGKNQNVKPGDILGAIAGESGIPGRLVGSIDMYDKYTFVEVPKEQADIVMDA 541

Query: 525 VKLDKGIQLKYLGGEKPDFR 544
           +   K I+ K +  EK + R
Sbjct: 542 MNHVK-IKGKSVHVEKANRR 560


>gi|118444591|ref|YP_877094.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135047|gb|ABK62091.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 528

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 161/548 (29%), Positives = 258/548 (47%), Gaps = 32/548 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+P    I  A+++ G+   + +QE  +   L  KD++  AQTG+GKT AFG+    T
Sbjct: 6   FENLPISDEIKSAIADMGFEEPSPIQEKAIPFILSGKDIIGQAQTGTGKTAAFGIPALDT 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +   N           + + PTRELA+Q  +E+  L      +  +   GG  + R+ + 
Sbjct: 66  IDLNNRN------LQIMVLCPTRELAIQATQEITKLGKYKKGLNVLAIYGGQPIDRQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+GTPGR+ DHI  K L   ++K VVLDEADEMLD+GFRDDIE I+ S P+ R
Sbjct: 120 LKRGVQIVIGTPGRVIDHINRKTLKTDNIKMVVLDEADEMLDMGFRDDIETIIQSVPENR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  L+K YQ  A  + +        +I+ R + V  + +   +  ++ 
Sbjct: 180 QTILFSATMPKAIVELSKKYQTKAEFIKVVHRQLTVPNIEQRYIEVKENFKIEVLSRLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +++FC+T+  V      L    +    L G++ Q +R   +   R+G   + +A
Sbjct: 240 MRNPKLSVIFCNTKKRVDEVVSELQSRGYFAEGLHGDMKQPQRDRVMSKFRNGTIEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + +L  + E  +HR GRTGRAGR G++   +     R+   + 
Sbjct: 300 TDVAARGIDVDDVEAVFNYDLPQDEEYYVHRIGRTGRAGRSGIAFTFVAGKAMRKLRDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KI 416
           R     +     PS   + E  A   L+         G   K +D +    D +     I
Sbjct: 360 RYTKTKIKRAEIPSANDVEEFKANTFLEKVKNTIE-DGHLGKYIDYIENLLDEDFATIDI 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A+  L++        E I     +                        G     +++G  
Sbjct: 419 ASALLKMALGEEKKEEVIEIQEEIG-----------------ETGAEPGMVRLFINIGRN 461

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            K +AR ++  +   +GI  + IG I +    TFVEV  +    +   +K +  I+ K +
Sbjct: 462 HKIQARDVIGAIAGETGIPGKVIGKIDIYEKFTFVEVPRENAREVLGIMK-NNTIKGKKI 520

Query: 537 GGEKPDFR 544
             E  + R
Sbjct: 521 NIEPANAR 528


>gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
           2228]
          Length = 529

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 163/540 (30%), Positives = 263/540 (48%), Gaps = 29/540 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N+   I +A+ E G+   T +Q   +   L  +D++  AQTG+GKT AFG+ L 
Sbjct: 4   IKFNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             + +EN        P A+ + PTRELA+QV  EL+ L      +  +   GG S+ R+ 
Sbjct: 64  EEMDSENKN------PQAIILCPTRELAIQVSEELKRLAKYKRRIYTLPVYGGQSIGRQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IV+GTPGR+ DHIR K L + ++   VLDEAD MLD+GF DDIE +L   P 
Sbjct: 118 KALKKGVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVMLDMGFIDDIETVLRDIPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSATI  +I  L+K YQK++  + +A EN     ID     +  +D+  A+  I
Sbjct: 178 DRQTLFFSATIPKSIKRLSKKYQKNSKFLRVAHENLTVPSIDQYYYEIRRNDKLKALTRI 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVFC+TR  V      L    +   A+ G L+Q +R   ++  R G   V 
Sbjct: 238 MDLSNPELAIVFCNTRKMVDELNIKLQARGYLSDAIHGGLNQNQRDRVMKKFRSGIIEVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+E V + +L  + +  +HR GRTGRAG+ G +   +      +   
Sbjct: 298 VATDVAARGIDVDDVEAVFNYDLPQDTDYYVHRIGRTGRAGKSGEAHNFVVGKDIYKLRD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL--AKHDPEK 415
           + +     +     PS + I+    ++  Q+   ++DS    +   +   L   ++   +
Sbjct: 358 IQKYTKSKIKRAQIPSQDDIQAAKFEQFSQELSAYMDSADLGKYIDLIEELIDEQYSAIE 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  ++                    +     +        G      G     +++G 
Sbjct: 418 IAAALMK----------------KSVDKKEEAQEPENSGQNFGDTGAEPGMVRLFINIGK 461

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQL 533
           K +   R ++  +   +G+    IGAI +  + TFVEV  +    + + +K +  KG ++
Sbjct: 462 KDRVSPRHIVGAIAGETGMPGGLIGAIDIYDNFTFVEVPREKGHEVLQIMKDNYIKGTKI 521


>gi|257413647|ref|ZP_04743689.2| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
 gi|257202759|gb|EEV01044.1| ATP-dependent RNA helicase, DEAD/DEAH family [Roseburia
           intestinalis L1-82]
          Length = 553

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 152/539 (28%), Positives = 266/539 (49%), Gaps = 33/539 (6%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   F+ +     +  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+
Sbjct: 24  METVRFDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGI 83

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVH 115
            +   +   N +         + ++PTRELA+QV  E+  L     GV +    GG  + 
Sbjct: 84  PVLHKVDPNNKK------TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEIS 137

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L+ GA I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+ 
Sbjct: 138 RQIKALKGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEY 197

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P++ R  + FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   
Sbjct: 198 IPEEGRQTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEV 257

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L Y+  K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+
Sbjct: 258 LTRLLDYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGK 317

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      
Sbjct: 318 TEILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVY 377

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD 412
           + + + R     +V  P PS + + +  A++++++   +  +    D   +++  + + D
Sbjct: 378 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 437

Query: 413 --PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                IAA FL+     +                   D+ R       +    +G     
Sbjct: 438 YTAMDIAAAFLKQALGQINL-----------------DNDREDSFDFDNTGAEEGMVRLF 480

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +++G K + +   ++  +   SG+  + +GAI +    TFVEV  +    +   +K  K
Sbjct: 481 INIGKKDRVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMKNAK 539


>gi|117922031|ref|YP_871223.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117614363|gb|ABK49817.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 619

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 162/592 (27%), Positives = 281/592 (47%), Gaps = 36/592 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E GY N T +Q A ++P +  KD+L  AQTG+GKT AF L L +      
Sbjct: 13  LSENLLRALDELGYENPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN------ 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +  + P  L +APTRELAVQV                +   GG S+H++   L+ G 
Sbjct: 67  -KVTSQAVPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLNALKRGP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DDIE+IL+ +P++R++ +F
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPEQRQLALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  + KDA  ++IA+ +     I+ R V V+  ++  A+V +L     +
Sbjct: 186 SATMPEQIKRVANKHLKDATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ ++ G+  + IATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    + R  N 
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFLR 422
            +     PS E + ER   R+ +      +   D  +     L    + D + +AA  L 
Sbjct: 366 RISPMKVPSPETVAERRLSRLGEQLAQTMTQDLDFMREAVAQLCQQLEVDTDLLAAALL- 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS--------------- 467
            H+     P ++  +   +  +R    +   + G       +                  
Sbjct: 425 -HQVQQERPLQLPAIQERTRDERSERGAERGERGERRSRESRPMPASLGSAEALKDNPDL 483

Query: 468 ---WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520
               + + VG         ++  +   + I+ + IGAI++   +T V++      + +  
Sbjct: 484 KMCRYVIDVGRDNGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTVDLPDGMPKEVLQH 543

Query: 521 LRRTVKLDKGIQLKYLGGEK-PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           L++     K + ++  G +   D      S  + +  +    ++ +   G  
Sbjct: 544 LKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRGDRPMGERKPRSASGDK 595


>gi|302205951|gb|ADL10293.1| DEAD-box helicase [Corynebacterium pseudotuberculosis C231]
          Length = 650

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 162/551 (29%), Positives = 272/551 (49%), Gaps = 23/551 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +P  I +A+++ G+   + +Q   +   +   DV+  AQTG+GKT AF L + S 
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSR 127

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +         P AL +APTRELA+QV    +      G +  +   GG +   +   
Sbjct: 128 INVKK------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSG 181

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+VGTPGR+ DH+    L+IS+L  +VLDEADEML +GF++DIE IL+ +P  +
Sbjct: 182 LRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADK 241

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+   I  L+K Y KD   + + SE R +++I  R + VA  ++ +A+  IL 
Sbjct: 242 QVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILE 301

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +A
Sbjct: 302 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + 
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--E 414
           R  N  ++    P+V+ + E   ++        +S++  +    + ++     +HD   E
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEKFADS--ITESLEDSQVAIFRNLIKAYAEEHDTPLE 479

Query: 415 KIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            IAA      RAG      E              RDD R     G   +     + + L+
Sbjct: 480 DIAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRDRGDRGSRFERSGDMAVYRLA 539

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLD 528
           VG +Q      ++  L    G++ +  G I +  D T VE+         D LR T    
Sbjct: 540 VGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGLPQSVFDNLRDTRISG 599

Query: 529 KGIQLKYLGGE 539
           + I ++   G 
Sbjct: 600 QLINIEKDNGR 610


>gi|146278925|ref|YP_001169084.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557166|gb|ABP71779.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 764

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 269/552 (48%), Positives = 367/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAVADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLYA+ G  +A C+GG+    ERR L+ GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYAEAGAQIATCVGGMDYRTERRALERGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L+++ L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLTGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YR + V+  DR++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRVLTVSARDREHAIFNVLRFYEAPSAIVFCKTRMAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGAKGVSVLIAAPSEVRKAQRLLSGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  +E  + + LL +  P ++A+ F+R+ R    APE +  V
Sbjct: 377 VQERDDARLLEHPVLGQDL-SEEMPLAEKLLERFGPAQMASAFVRLWREARSAPEVLQDV 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +             F  + W+S+ VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPAQRAPRER----------GEFGEAVWYSVGVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAKKFGDALEIEAGVGMVRLEGEPSLERPERAPRKPFAERT 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRTRDEAPRREK 557


>gi|213964614|ref|ZP_03392814.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
 gi|213952807|gb|EEB64189.1| cold-shock deAd box protein a [Corynebacterium amycolatum SK46]
          Length = 702

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 153/559 (27%), Positives = 267/559 (47%), Gaps = 28/559 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  I  A+ + G+   + +Q A +   +  +DV+  AQTG+GKT AF L + + +   
Sbjct: 67  ELPDDIVNAVRKVGFETPSPIQAATIPTLMSGRDVVGLAQTGTGKTAAFALPILARIDRS 126

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                   AP AL +APTRELA+QV    +      G +  +   GG S   +   L+ G
Sbjct: 127 ------VRAPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQSYGVQLSGLRRG 180

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+VGTPGR+ DH+    L+IS L+ +VLDEADEML +GF++D+E IL  +P  +++ +
Sbjct: 181 AQIIVGTPGRVIDHLEKGSLDISDLRFLVLDEADEMLQMGFQEDVERILADTPDDKQVAL 240

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  L+K Y  +   + + S+ R   +I  R ++V+  ++ +A+  IL     
Sbjct: 241 FSATMPASIRRLSKQYLTEPEEITVKSQTRTADNIRQRFLMVSHRNKLDALTRILEVEEF 300

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVA
Sbjct: 301 EAMIMFVRTKHETEELAEKLRARGFSAAAINGDIPQTLRERTIDQLKDGRLDILVATDVA 360

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +     R    + R   
Sbjct: 361 ARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEALLFVTPREGRLLRSIERATK 420

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI------ 416
             +     P+V+ + +   Q+   D      DS     +++++    +HD   +      
Sbjct: 421 SQLHEMKLPTVDEVNDSRKQKFADDLTEALADSQVPVFRELIEEYAEEHDTPLVDIAAAI 480

Query: 417 -----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSS 467
                +  FL          +                 SR  +  G   D    + +G++
Sbjct: 481 AAQAQSGDFLMKEPPRGRRHDRDRDRFDRDRNRGRDGRSRGERGQGKRADLVEFDREGTA 540

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRR 523
            + +SVG +Q      ++  +    G++ +  G I ++ D T VE+ A    + ++ L  
Sbjct: 541 TYRISVGRRQHVRPGAIVGAIANEGGLSSKDFGHIDIRGDHTLVELPANLPQEVINNLSD 600

Query: 524 TVKLDKGIQLKYLGGEKPD 542
           T    + I LK   G   D
Sbjct: 601 TRISGQLIGLKLDDGTSVD 619


>gi|108759595|ref|YP_632093.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
 gi|108463475|gb|ABF88660.1| RNA helicase DeaD [Myxococcus xanthus DK 1622]
          Length = 602

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 164/546 (30%), Positives = 265/546 (48%), Gaps = 26/546 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L +
Sbjct: 45  TFDSLGLKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLN 104

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     R +  S   AL + PTRELA+QV   +     K G+ V    GG  + ++ R 
Sbjct: 105 HVEPGACRPNTTS---ALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRV 161

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV TPGR  DH+R   L +  ++ VVLDEADEMLD+GF +D+E IL  +P+ R
Sbjct: 162 LKRGVDVVVATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDR 221

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVN 237
           +  +FSAT+ P I ++A+ +  + VRV IA E  +      +   A +V  + +   +  
Sbjct: 222 QTALFSATLPPRIASIAERHLHEPVRVKIAREKVEQGEIPRVRQTAYVVPRAFKIATLGR 281

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AI+FC TR  V   T  L    ++  AL G ++Q++R   ++ ++     +
Sbjct: 282 LLDVESPTAAIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDL 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++     R   
Sbjct: 342 LVATDVAARGLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLR 401

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + R     +     P+V  +RE+  + +   L++ L         + +V+ L ++ D  
Sbjct: 402 NIERVTGQRIEVATVPTVADMREKRQEMLRASLRETLVTGEYDS-LRNVVESLASEFDAM 460

Query: 415 KIAAGFLRI----HRAGLCAPEEITPVSLVSGRDRFRDD------SRAFKVGGGSRDNFK 464
            IAA  +++       G    E   PV       R R         R  +   G +    
Sbjct: 461 DIAAAAVKLLHEAQDEGRDTEETEIPVVAPPQERRERTGKFGAPTGRPGRPERGPKARGG 520

Query: 465 GSSW----FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
             +W      +  G         L+  +   +G+    IGAI++    + VEV     + 
Sbjct: 521 PPTWDVTRLWIGAGRHAGVRPADLVGAIAGEAGVESSKIGAIQIGDAFSLVEVPESDANR 580

Query: 521 LRRTVK 526
           +   +K
Sbjct: 581 IIAALK 586


>gi|33240544|ref|NP_875486.1| superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238072|gb|AAQ00139.1| Superfamily II DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 603

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 158/552 (28%), Positives = 266/552 (48%), Gaps = 27/552 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE     + + + L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L L   
Sbjct: 53  FEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTGKTAAFALPLLER 112

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +       S    P  L + PTRELA+QV    +        +  +   GG     +   
Sbjct: 113 IN------SKERNPQVLVLTPTRELAMQVAESFKAYSEGHANINILAVYGGSDFRSQIYS 166

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+VGTPGR+ DHIR   LN   L+ +VLDEADEML +GF DDIE+IL+  P +R
Sbjct: 167 LKRGVEIIVGTPGRVMDHIRQGTLNQDSLQCLVLDEADEMLRMGFIDDIEWILEQLPNER 226

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M++FSAT+ P I  L+K Y +D   + I ++ ++   I    + V  S +   +  +L 
Sbjct: 227 QMVLFSATMPPEIRKLSKRYLRDPAEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLE 286

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  I+F  T+A   +  + L      V  L+G++ Q  R   ++ +R G   + +A
Sbjct: 287 LNYGEGVIIFARTKAITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVA 346

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  I    +     L 
Sbjct: 347 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERSYLNNLE 406

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KH 411
           R    S+     P+ E+I     Q+I +D L   S +  +++  +++           + 
Sbjct: 407 RAVGQSIERMEIPNNESINNHRIQKIKRDLLTTASQKRKDQEETNLIKEVINEIESELEI 466

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--------F 463
            P++IA   + +   G       T  S ++  +RFR  +      G SR           
Sbjct: 467 TPKEIALAAINLSI-GESPLLINTDESWINQAERFRKSNDRRDNRGRSRRRNDLDIGTTE 525

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
           K    F + VG + + +   ++  +   SG+N + IG I++    + V++       + +
Sbjct: 526 KDKERFRVDVGHRDRVKPGNIVGAIANESGLNGRMIGRIQIFESYSLVDLPKGMPTKIFQ 585

Query: 524 TVKLDKGIQLKY 535
           ++K  K +  + 
Sbjct: 586 SLKRVKVMNKEL 597


>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 528

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 163/529 (30%), Positives = 259/529 (48%), Gaps = 29/529 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+ E G+   + +Q A +   L  +D++  AQTG+GKT AFG+ L   +  +
Sbjct: 10  NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKMDTK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R      P A+ + PTRELA+QV  E+  L     G  V    GG ++  + R L+ G
Sbjct: 70  VKR------PQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKTG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+I+VGTPGR+ DH+R   L +  LK VVLDEADEML++GFR+DIE IL   P++R+ L+
Sbjct: 124 ANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  + K YQKD+  + +  +     +I+     V    +   +  +L  H  
Sbjct: 184 FSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHSP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +IVFC+T+  V   T  L    +    + G+L Q +R   ++  R GR  + +ATDVA
Sbjct: 244 KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++ V + +L  + E  +HR GRTGRAGR G +   +      +   + R   
Sbjct: 304 ARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYCK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD--PEKIAAGF 420
             +   P PS+  ++   A++ L++   L  ++       M+D  + + D    +IAA F
Sbjct: 364 TKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAAF 423

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L+   +                     +         G      G     +++G K+   
Sbjct: 424 LKKQIS------------------ENEEQEANQGEDFGDTGAEAGMVRLFINIGKKKGVR 465

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              ++  +   S I+   +GAI V    TFVEV  +    +   ++  K
Sbjct: 466 PGDILGAIAGESSISGDLVGAIDVHDQYTFVEVPKEVAKDVMYGMRHAK 514


>gi|325959925|ref|YP_004291391.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
           sp. AL-21]
 gi|325331357|gb|ADZ10419.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. AL-21]
          Length = 529

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 147/528 (27%), Positives = 256/528 (48%), Gaps = 27/528 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A+ + G+   T +Q   +   L  KDV   AQTG+GKT AFG+ +  T+   
Sbjct: 10  NISSEIQRAVEDMGFEEATPIQSLAIPHVLEGKDVTGQAQTGTGKTAAFGIPILETVDPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           N          A+ + PTRELA+QV  E++ L      +  +   GG  + R+ + L+ G
Sbjct: 70  NRD------LQAVILCPTRELAIQVAEEMKKLSKYMRKIGILPVYGGQPIERQIKALKKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DH+R   +++  +K ++LDEADEMLD+GFR+DIEF+LD  P +R++L+
Sbjct: 124 VQIIIGTPGRVMDHMRRGTIDMGSVKMLILDEADEMLDMGFREDIEFVLDYIPDERQILL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP I  + + YQ+    + +  +     +I      V    + + +  +L  +  
Sbjct: 184 FSATMSPDILYITRRYQESPEFLKVVPKELTVPEIKQIYFEVKEKMKLDVLSRLLDINDF 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V +    L    +    L G++SQ++R N +   R G   + +ATDVA
Sbjct: 244 KLSLVFCNTKRRVDKLVNHLQIRGYAADGLHGDMSQRQRDNVMSKFRSGNIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++E V + ++ ++ E  +HR GRTGRAG+ G++   +      +   + R   
Sbjct: 304 ARGIDVDNVEAVFNFDVPNDDEYYVHRIGRTGRAGKTGIAYTFVSGKEVYQLRDIMRYTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL---DSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +  +  PS   + E      L+    +   D+I  + + +  ++   +   + AA  L
Sbjct: 364 TKIEQQQIPSASDVAEIKTTNFLEKIKRIINNDNIDNEVRMVEKMMEEDYSSVETAAALL 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +I         + T                      G      G     +++G K K + 
Sbjct: 424 KIVMEKSGTTTKTT-----------------SSQDYGDTGAASGQVRLFINIGRKDKVKV 466

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           R ++  +   +G++  +IG + +    +FVEV       +  T+   K
Sbjct: 467 RDIIRAIADKTGLSSSAIGKVDIFDKFSFVEVPKQSASDVISTMSGTK 514


>gi|312129451|ref|YP_003996791.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905997|gb|ADQ16438.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 619

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 159/559 (28%), Positives = 273/559 (48%), Gaps = 27/559 (4%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   F  +P    I +A+ E G+   T +Q A +   +  +DV+  AQTG+GKT AFG+
Sbjct: 65  MQTLKFSELPISDYIVKAVEEMGFTESTPIQTAAIPVVMSGRDVIGQAQTGTGKTAAFGI 124

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVH 115
                + AE+           L + PTRELA+QV  +L  L     G++V+   GG S  
Sbjct: 125 PAIEHVNAEDRN------TQVLILCPTRELALQVKEQLTLLAKYKKGLLVSAIYGGESYE 178

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+  +L+ G  IVVGTPGR+ DHI  K L + ++  V+LDEADEML++GFR+DIE IL  
Sbjct: 179 RQFANLKRGTQIVVGTPGRIMDHIEKKTLKLDNISMVILDEADEMLNMGFREDIEQILSF 238

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+ ++FSAT+S  I  + K +Q D   V +  +   +++I+    LV    +   +
Sbjct: 239 AKEDRQTVLFSATMSKEILNITKKFQNDPEIVKVTRKEITNTNIEQSYYLVKKEAKFELM 298

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V ++  H  +  +VFC+T++ V    + L  + +    L G++ Q  R+  +   R+G  
Sbjct: 299 VRLIDVHDLQLMLVFCNTKSKVDEIVEELQANGYAAEGLHGDMRQAARNQVMNKFRNGNT 358

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARGID+  ++ VI+ +L  + E  +HR GRTGRAG+ G +   I +  + R
Sbjct: 359 KILVATDVAARGIDVSGVDAVINYDLPMDLEYYVHRIGRTGRAGKLGKAFLFITKRDRSR 418

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHD 412
              L +   V++     P+   + +    + ++   + +  D+    EK +  +      
Sbjct: 419 MRDLEQYTKVAIPQGKIPTSADLEKSRINKFVEKIRENIVEDTNPAFEKIVDQLKEEGFY 478

Query: 413 PEKIAAGFLRIH----RAGLCAPEEITPVSLVSGRD---RFRDDSRAFKVG-----GGSR 460
             +I +  +++     R      E+I   +         + R + R F        GG R
Sbjct: 479 THQIISALMQMQMGAVRKSSFRDEDIADEARGRNERFASKERGNRREFSRDRKPSFGGGR 538

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
              +G +   +++G K       ++  +   + I  + IG I +    +FVEV    V  
Sbjct: 539 SAEEGMTRLFINLGRKDNVSPNHIVGAIASEAKIPGRVIGQIDMYDKFSFVEVPQRDVRK 598

Query: 521 LRRTVKLDKGIQLKYLGGE 539
           +   +K  K I  +    E
Sbjct: 599 VIEGMK-GKTINQREANIE 616


>gi|188584150|ref|YP_001927595.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347648|gb|ACB83060.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 567

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 267/568 (47%), Positives = 361/568 (63%), Gaps = 9/568 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++P  +  AL+ER Y   T VQ+A+L+    ++D+LVSAQTGSGKTVAFGLA+A TLL
Sbjct: 3   FPSLPSPLARALTERNYAEPTPVQQAVLDAA-PDRDLLVSAQTGSGKTVAFGLAIAGTLL 61

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +   P +APLAL IAPTRELA+QV REL WLYA+TG  V  C+GG+   RE R L+ 
Sbjct: 62  GPEEALPPPAAPLALVIAPTRELALQVQRELTWLYAQTGARVVPCVGGMDPRREARALEA 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G HIVVGTPGRL DH+    L    L+AVVLDEADEMLD+GFR+D+EFIL ++P+ RR L
Sbjct: 122 GVHIVVGTPGRLRDHMERGRLVTEGLRAVVLDEADEMLDMGFREDLEFILAATPEDRRTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI  LA++YQ+DA+R+ +A E R H+DI YRAV V   + ++A+VN+LRY  
Sbjct: 182 LFSATLPKAIVALAESYQRDALRLAVAGETRGHADIVYRAVRVMPREIEHAVVNVLRYVD 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A  AIVFC+TR  V      L E  F  VALSGEL Q ER+ ALQ +RDGRARVC+ATDV
Sbjct: 242 APVAIVFCNTRDGVRHLQASLTERGFSAVALSGELGQGERNAALQALRDGRARVCVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L+LVIHA+L  + E + HRSGRTGRAGRKG SV ++P   +RRAE++F  A
Sbjct: 302 AARGIDLPGLDLVIHADLPHDAEVMQHRSGRTGRAGRKGTSVVLVPPARRRRAEQMFAIA 361

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAG 419
            VS  W   P+ + IR  D +R++ DPL  +    +E    +   + L+ +  PE++AA 
Sbjct: 362 KVSPDWSGPPNADEIRTLDRERMMSDPLLAEPETEEEREWERDWAEALMERFPPERLAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R++R+ +  PEE++  +  + R    D      VG       + ++WF L++G + +A
Sbjct: 422 FARLYRSRIPVPEEVSDPAYETSRRP--DSRSGVPVGAPRVGEDEPAAWFRLNLGRRDRA 479

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV--SADGVDLLRRTVKLDKGIQLKYLG 537
           E R L+PML R   I R  IGAIR+  + T  EV  SA          +    ++++ + 
Sbjct: 480 EPRRLLPMLTRRGQIGRGDIGAIRIFDNETTFEVRASAAEDFAAAFARRGSADVRVERMQ 539

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           G+ P     KS   +    +   + R  
Sbjct: 540 GDGPAPAKAKSPRAQRHRREASKSSRGG 567


>gi|152996400|ref|YP_001341235.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150837324|gb|ABR71300.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 632

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 155/619 (25%), Positives = 269/619 (43%), Gaps = 61/619 (9%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + +A+++ GY   +++Q   +   L  +D+L  AQTG+GKT AF L L S
Sbjct: 9   TFDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGRDLLGQAQTGTGKTAAFALPLLS 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +   +           L +APTRELA+QV    +           +   GG+S   + R
Sbjct: 69  RIDVTD------KTTQLLVLAPTRELAIQVSEAFQSYARNLPDFHVLPIYGGMSYDTQLR 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGR+ DHIR K L +  +KA+VLDEADEML +GF DD+E+IL+ +P  
Sbjct: 123 QLKRGVQVVVGTPGRVMDHIRRKTLKLDGIKALVLDEADEMLRMGFIDDVEWILEQTPPT 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+   I  +A  +  +   V I ++      I  +   V+   + +A+  IL
Sbjct: 183 RQIALFSATMPAVIRQVANRHLNNPKEVKIVTKTSTAMTITQKYWPVSGLHKLDALTRIL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     I+F  T+A+     + L        AL+G++SQ  R   +  ++ G+  + +
Sbjct: 243 EMNEHDGMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + +
Sbjct: 303 ATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQAI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP----------LFLDSIQGDEKKMVDVLLA 409
            R     +     P+   I      R  Q             FL+ +Q  +K+       
Sbjct: 363 ERATRQPIESMTLPTASDINAHRVNRFKQSITDAMDNEDLDFFLELVQSYQKE------N 416

Query: 410 KHDPEKIAAGFLRIHRAG---------------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           + DP K+AA    + +                     +  +P      R    D +   +
Sbjct: 417 EVDPLKMAAALAHMAQGKTPLLLSEMEVRQERRERREDRDSPRGERGDRGDRGDRAPRER 476

Query: 455 VGGG--------SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
                         D     + + + VG     +   ++  +   + I  + IG I +  
Sbjct: 477 KVRPVTAEAMPLKDDPDTSMTRYVVQVGYSDGVKPGNIVGAIANEADIESRYIGHIEIYE 536

Query: 507 DLTFVEVS----ADGVDLLRRTVKLDKGIQLKYL--------GGEKPDFRGYKSSGFKSK 554
           D   V++     AD +  L +T    +   +  L            P  R   +SG + +
Sbjct: 537 DFATVDLPSNLSADALGKLGKTRICGQRTDIAKLENADELNKRAAAPSTRKRPASGDR-R 595

Query: 555 NSQDGATKRFKRFKGASKN 573
            S  G  +R     G  ++
Sbjct: 596 PSNGGERRRPSAGAGGGRD 614


>gi|71276350|ref|ZP_00652627.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71901364|ref|ZP_00683458.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|170729445|ref|YP_001774878.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71162812|gb|EAO12537.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Dixon]
 gi|71728863|gb|EAO31000.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Xylella fastidiosa Ann-1]
 gi|167964238|gb|ACA11248.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 609

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 282/606 (46%), Gaps = 45/606 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A+++ GY   + +Q A +   L  +DVL  AQTG+GKT AF L L +
Sbjct: 10  LFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPLLT 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
             +    +      P  L +APTRELA+QV    +   A  +G  V    GG S  ++  
Sbjct: 70  RTVLNQVK------PQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQQLA 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E +L   P  
Sbjct: 124 ALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPAS 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+ Y +D + V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q +R   +  ++DG+  + +
Sbjct: 244 EVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +    ++
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGMLRQI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHD--PE 414
            R  +  +     PSV+A+ +    +    + + L + +     +K++    ++H+    
Sbjct: 364 ERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNVPAI 423

Query: 415 KIAAGFLRIHR--------------------AGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +IAA   R+ +                    A     +  +        +      R  +
Sbjct: 424 EIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKRPQR 483

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                     G   + + VG     +   ++  +   +G+  + IG I ++ D + +++ 
Sbjct: 484 NAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLP 543

Query: 515 ADG----VDLLRRTVKLDKGIQLKYLG----GEKPDFRGYKSSG---FKSKNSQDGATKR 563
           A+     +  L++     + +Q+  +              K  G   F  K   + +TK 
Sbjct: 544 AEMPHEILQHLKKVWVSGQQLQMHRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKSTKP 603

Query: 564 FKRFKG 569
              + G
Sbjct: 604 KPPYSG 609


>gi|159037848|ref|YP_001537101.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157916683|gb|ABV98110.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 574

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 161/544 (29%), Positives = 262/544 (48%), Gaps = 23/544 (4%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +  +     P   P+AL
Sbjct: 35  GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPLLQRMSVDR----PTGDPVAL 90

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV         + G  V    GG  + R+ R L +G  +VV TPGR  DH
Sbjct: 91  VLVPTRELAVQVSEAFHRYGKELGTRVLPIYGGQPIGRQLRALDSGVDVVVATPGRALDH 150

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  +  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I  +A+
Sbjct: 151 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 210

Query: 199 NYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+          +   +   A LVA + +  A+  +L       AIVFC +R 
Sbjct: 211 AHLTDPIRILIAREQPVAGEAPRVRQSAYLVARAHKPAALGRVLDIESPTAAIVFCRSRE 270

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+  L  
Sbjct: 271 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLMATDVAARGLDVEQLSH 330

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +  P+V
Sbjct: 331 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 390

Query: 376 EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAGFLRIHRA----G 427
             +R R  +  L      +S+  D+ +   V++     + D  ++A   +R+       G
Sbjct: 391 ADLRNRRLE--LTQAALRESLLEDDLEPFRVIVESLSDEFDLMEVALAAVRLAHEATLPG 448

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
               EE  P   V      R            R    G++   + +G +     + L+  
Sbjct: 449 ALDEEEEIPQVSVRPSRTGRPGPEGRGDRRSGRPRGTGTTQVFVGLGRRAGVRPQDLVGA 508

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYK 547
           +   +G+N + IG+I +    + VEV A   D +        G++   + G +   R  +
Sbjct: 509 ITGETGMNGRDIGSIEIADRFSLVEVPAGLADEVIT------GLRGSTIKGRRATVRRDR 562

Query: 548 SSGF 551
            +  
Sbjct: 563 DTDG 566


>gi|194333556|ref|YP_002015416.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194311374|gb|ACF45769.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 607

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 157/531 (29%), Positives = 252/531 (47%), Gaps = 16/531 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + EAL + GY N T +Q   +   L+ +DVL  AQTG+GKT AF L + S +  +
Sbjct: 37  ELAAPVIEALDKVGYENPTPIQLQTIPYILQGRDVLGQAQTGTGKTAAFALPILSRIDCD 96

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  + P AL + PTRELA+QV    +   A       +   GG     + + L+ G
Sbjct: 97  K------NYPQALVLTPTRELAIQVAEAFQRYAACMPDFHVLPIYGGQDYAGQLKRLKRG 150

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DHI+   L +  L  +VLDEADEML +GF DD+E+IL+ +P  R++ +
Sbjct: 151 VHVVVGTPGRVIDHIKRSSLKLDKLHTLVLDEADEMLRMGFVDDVEWILEQTPASRQVAL 210

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ +  D   + I S++     I  R + V    +  A+  IL     
Sbjct: 211 FSATMPSVILRIARKHLSDPAEITIKSKSSTVDAITQRFLTVGAHHKLEALTRILEAEPF 270

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  TR +    ++ L    +   ALSGE+ Q +R   +  +++G+  + +ATDVA
Sbjct: 271 DGVIIFVRTRTATQDLSEKLRARGYAAAALSGEMVQHQREKTIDQLKNGKLNIIVATDVA 330

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +          + R   
Sbjct: 331 ARGLDVERVTHVINYDIPSDTESYVHRIGRTGRAGRSGDAILFVTSREMSMLRTIERAVR 390

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKI-AAGFL 421
            S+     PS E I ++   +  Q    + S +  E    +V+     HD   + AA  L
Sbjct: 391 RSIDRMELPSAEMINDKRIAKFKQQISDVISTEDLEVFSDLVEQYCRDHDSTMLQAAAAL 450

Query: 422 RIHRAGLCA------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                G         P   T  S   GR +  D   + +          G+  F + VG 
Sbjct: 451 AFMVQGTTPLLVSAEPLHDTSRSQSQGRQKRTDRRSSSRGDSLPFSQQDGTETFRIEVGK 510

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +   +   +   +G+   S+G I +Q + + V++       L R +K
Sbjct: 511 VHGVKPGNIAGAIINETGLPADSVGRISIQEEYSTVDLPQGMPKDLFRELK 561


>gi|291537820|emb|CBL10931.1| Superfamily II DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 535

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 152/539 (28%), Positives = 266/539 (49%), Gaps = 33/539 (6%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   F+ +     +  A++E G+   T +Q   +   +   DV+  AQTG+GKT +FG+
Sbjct: 6   METVRFDQLDLYPQVLRAIAEMGFEEATPIQSQAIPVVMSGVDVIGQAQTGTGKTASFGI 65

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVH 115
            +   +   N +         + ++PTRELA+QV  E+  L     GV +    GG  + 
Sbjct: 66  PVLHKVDPNNKK------TQVIILSPTRELAIQVADEIRKLAKYMHGVKILPVYGGQEIS 119

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L+ GA I++GTPGR+ DH+R K +    +  +VLDEADEML++GFR+DIE IL+ 
Sbjct: 120 RQIKALKGGAQIIIGTPGRVMDHLRRKTIRCEAVNTIVLDEADEMLNMGFREDIETILEY 179

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P++ R  + FSAT+   I  + K YQ DAV + +  +     +I+     V   D+   
Sbjct: 180 IPEEGRQTVLFSATMPKPILDITKKYQHDAVTIKVVKKELTVPNIEQYYYDVKRKDKIEV 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L Y+  K ++VFC+T+  V   T+ L    +    L G++ Q +R   ++  R G+
Sbjct: 240 LTRLLDYYNPKLSLVFCNTKRMVDELTEELQGRGYFAEGLHGDMKQTQRDRVMRGFRTGK 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      
Sbjct: 300 TEILIATDVAARGIDVDDVEAVFNYDIPQDDEYYVHRIGRTGRAGRTGRAFTFVKGKEVY 359

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD 412
           + + + R     +V  P PS + + +  A++++++   +  +    D   +++  + + D
Sbjct: 360 KLKDIMRYCKTKIVAMPIPSTDDVAQIKAEKVMEEIGRIIDEENLKDTIDIIEKQINESD 419

Query: 413 --PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                IAA FL+     +                   D+ R       +    +G     
Sbjct: 420 YTAMDIAAAFLKQALGQINL-----------------DNDREDSFDFDNTGAEEGMVRLF 462

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +++G K + +   ++  +   SG+  + +GAI +    TFVEV  +    +   +K  K
Sbjct: 463 INIGKKDRVKPGDILGAVAGESGMPGKLVGAIDMYDKYTFVEVPREYGKEVLEAMKNAK 521


>gi|190573462|ref|YP_001971307.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
 gi|190011384|emb|CAQ44999.1| putative DEAD-box helicase [Stenotrophomonas maltophilia K279a]
          Length = 654

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 160/595 (26%), Positives = 274/595 (46%), Gaps = 64/595 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  + 
Sbjct: 16  LSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQ 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    +       G  V    GG    ++   L+ G 
Sbjct: 76  IK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +F
Sbjct: 130 HIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL      
Sbjct: 190 SATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAA
Sbjct: 250 AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++       +    ++ R    
Sbjct: 310 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQ 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     PSVEA+ +    +        +++          LL + + E      +IAA 
Sbjct: 370 PIEEMQLPSVEAVNDNRINKFT--TRITETLGAGGLDFYRQLLERFENEQNVPAIEIAAA 427

Query: 420 FLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGG------------------- 457
             ++ +     L  P    P    + R+RF    R  +                      
Sbjct: 428 LAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFERGPRRDDA 487

Query: 458 -------------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                              +G   + +SVG +   +   ++  +   +G+  + IG I +
Sbjct: 488 EGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDI 547

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYL-GGE---------KPDFRG 545
             D + +++ A    D +  L++     + +Q++ L  GE         KP F  
Sbjct: 548 HDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRFDK 602


>gi|114768996|ref|ZP_01446622.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
 gi|114549913|gb|EAU52794.1| ATP-dependent RNA helicase protein [alpha proteobacterium HTCC2255]
          Length = 667

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 266/560 (47%), Positives = 362/560 (64%), Gaps = 14/560 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL+++GY  LT VQ  +   +    D+LVSAQTGSGKTV FG+A+A T+L +   
Sbjct: 3   KTLEDALAKQGYDTLTPVQLEVSKKEFENSDLLVSAQTGSGKTVGFGIAIAPTILKDAIN 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WLY      +A C+GG+ +  ERR L+ G+HIV
Sbjct: 63  FDKAVAPLALVIAPTRELAMQVKRELTWLYGMAKATIASCVGGMDMRDERRSLERGSHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI+   +N+S +KAVVLDEADEMLDLGFR+D+EFIL  +P+ RR LMFSAT
Sbjct: 123 VATPGRLRDHIQRGSINLSQVKAVVLDEADEMLDLGFREDLEFILSEAPESRRTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LAK+YQKDA+R+   S+ +QH+DI+Y A+ V+  D +NAI+N LRY+ A NA+
Sbjct: 183 VPRAIVNLAKSYQKDAIRITTVSDTKQHADIEYIAMTVSPRDGENAIINALRYYEAPNAL 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA V+R T  L+   F VVALSGELSQ ER++ALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRAMVNRLTSRLSNRGFSVVALSGELSQSERTHALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+L+LV+HAEL  N E +LHRSGRTGRAGR+G+S  ++P   +++AERL +   V+  
Sbjct: 303 DLPNLDLVVHAELPQNHETMLHRSGRTGRAGRQGVSAMIVPSRFRKKAERLLQLGKVTAN 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W+ APS + I E+D +R+L D  + +     EK  VD L    + E++A  F R++ A  
Sbjct: 363 WQDAPSAKQIIEKDQERLLSDSTWTNLPTSAEKGSVDKLTETFNIEQLATAFFRLYIANQ 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE+ P           +              F  + WFS+S G +  A  R ++PM+
Sbjct: 423 SAPEELAPSGATGAPKPRGE--------------FGPTVWFSISGGREADANPRRMLPMI 468

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
           C++  ++R  IGAIR+Q   TF+E+    V+   + +  +K I+      +       K+
Sbjct: 469 CKAGNLSRDDIGAIRIQDTETFIEILKSSVEGFLKAIGSNKEIEPGAWLKQLSKAPKIKT 528

Query: 549 SGFKSKNSQDGATKRFKRFK 568
           S     +  D   K FK  K
Sbjct: 529 SPRDKFDRSDKNGKPFKSKK 548


>gi|226307581|ref|YP_002767541.1| ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis PR4]
 gi|229493790|ref|ZP_04387568.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
 gi|226186698|dbj|BAH34802.1| probable ATP-dependent RNA helicase DeaD [Rhodococcus erythropolis
           PR4]
 gi|229319289|gb|EEN85132.1| cold-shock DEAD box protein A [Rhodococcus erythropolis SK121]
          Length = 591

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 156/566 (27%), Positives = 276/566 (48%), Gaps = 32/566 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +ALS+ GY + + +Q A + P L  KDV+  AQTG+GKT AF + + S
Sbjct: 12  TFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAVPVLS 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +       +      AL +APTRELA+QV     ++     G+ V    GG S   +  
Sbjct: 72  RID------TSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLS 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++++LK +VLDEADEML +GF++D+E IL  +P  
Sbjct: 126 GLRRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGD 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  +I  ++K Y  + V + + S+    S+I  R + VA   + +A+  +L
Sbjct: 186 KQVALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+ +     + L        A++G++ Q +R   +  +++G   + +
Sbjct: 246 EVEAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +    +   + +
Sbjct: 306 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            +     +     PSV+ +  +   +        +S+  +   M   ++  +D E     
Sbjct: 366 EKATRQPLAEMQLPSVDDVNAQRVAKFGDS--ITESLASENLAMFRKMIEDYDQEHDVPL 423

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-----SW 468
             IAA      R G        P +        R+     +   G     +G      + 
Sbjct: 424 IDIAAALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAA 483

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRT 524
           + ++VG + +     ++  +    G+ R   G I ++PD + VE+ AD     ++ LRRT
Sbjct: 484 YRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRT 543

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSG 550
                 IQL      +PDF   +   
Sbjct: 544 RISGVLIQL------QPDFGPPQGRP 563


>gi|78355199|ref|YP_386648.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217604|gb|ABB36953.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 572

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 148/533 (27%), Positives = 253/533 (47%), Gaps = 30/533 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P  + +  A+ + G+   + +Q   +   L  KDV+  AQTG+GKT AFG+ +  
Sbjct: 50  LFADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKTAAFGIPILE 109

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +   +       A  A+ + PTRELA+QV  E+  L      +  V   GG  + R+ R
Sbjct: 110 RIDPRD------KATQAVVLCPTRELAIQVAEEVTTLARHKRGISVVPVYGGQPIERQVR 163

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DH+    ++I+ +K VVLDEADEMLD+GFRDDIEFIL    ++
Sbjct: 164 ALRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDEADEMLDMGFRDDIEFILGKMEQE 223

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + + FSAT+  AI  +A+ Y K+   + +  +      I+     V    +  ++  +L
Sbjct: 224 VQTVFFSATMPRAILDMAQRYLKEPEFLKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVL 283

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  K  IVFCST+  V      L    +    L G L+Q +R   +   R G   + +
Sbjct: 284 DVYNPKLTIVFCSTKVGVDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILV 343

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++E V++ ++ ++ E+ +HR GRTGRAGR G +   +      +   +
Sbjct: 344 ATDVAARGIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKLRDI 403

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R     +     PS+  +      ++L +    +    ++   + +  ++  +    + 
Sbjct: 404 KRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELVEGIIGEEFTSVEA 463

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  LR+                     R   D+   +   G      G      +VG K
Sbjct: 464 AAALLRMMM------------------HRNAGDAVTEEQKFGDTGAQPGMVRLFFNVGRK 505

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            +  AR  +  +   +G+  + IG+I +    TFVEV  +    +   +  ++
Sbjct: 506 ARVTARDFVGAIAGETGLPGRMIGSIDIYDRFTFVEVPNEFAAEVLAVMNGNQ 558


>gi|285018817|ref|YP_003376528.1| ATP-dependent RNA helicase (cold-shock dead box protein)
           [Xanthomonas albilineans GPE PC73]
 gi|283474035|emb|CBA16536.1| probable atp-dependent rna helicase (cold-shock dead box protein)
           [Xanthomonas albilineans]
          Length = 657

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 163/644 (25%), Positives = 280/644 (43%), Gaps = 79/644 (12%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++E GY + + +Q A +   L  +D+L  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLCSAVMKAVAEIGYESPSPIQAATIPALLTGRDLLGQAQTGTGKTAAFALPILS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      P AL +APTRELA+QV      +  A  G  V    GG    ++  
Sbjct: 70  RLDFAQRK------PQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+ 
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPQS 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+  AI  +A+ Y  D   V IAS+    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPAAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A      + L        A++G++ Q +R   +Q ++DG+  + +
Sbjct: 244 EVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQAQRERVIQQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLRAI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPE-K 415
            R     +     PSV+A+ ++   R ++   + +    I    + +      K+ P  +
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDQRVSRFMERISETIAAGGIDSYRELLQRFEAEKNIPMVE 423

Query: 416 IAAGFLRIHRAGLC-----------------------------------APEEITPVSLV 440
           +AA   R+ +                                         ++    +  
Sbjct: 424 VAAALARLLQGDTPLLLAPDRPRAAPQGERFERPGGERRERGERPERAKFEQKFEREARP 483

Query: 441 SGRDRFRDDSRAFKVGGGSRDNFK-----------------------GSSWFSLSVGSKQ 477
           S RD      R     GG  D  +                       G   + + VG + 
Sbjct: 484 SRRDEGERAPRPAPAQGGDFDYHRDVGSFEAPRRDKAPKAPRGAPDVGMETYRIEVGHQH 543

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF----VEVSADGVDLLRRTVKLDKGIQL 533
             +   ++  +   +G+  + IG I +  D +     VE+  + +  L++     + +Q+
Sbjct: 544 GVKPANIVGAIANEAGLESKYIGRIDIHDDHSILDLPVEMPRELLAHLKKVWVSGQQLQM 603

Query: 534 KYLG----GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           + L     G  P    +   G         A +   RF      
Sbjct: 604 RKLDDATSGGAPFKPKFARGGKPGGKPNAAAARPPGRFGDRPGE 647


>gi|183984161|ref|YP_001852452.1| cold-shock DEAD-box protein, DeaD [Mycobacterium marinum M]
 gi|183177487|gb|ACC42597.1| cold-shock DEAD-Box protein, DeaD [Mycobacterium marinum M]
          Length = 571

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 155/568 (27%), Positives = 271/568 (47%), Gaps = 21/568 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       + ++A  AL +APTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KID------TTSTATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGSSYAIQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+  + L++S +  +VLDEADEML +GF +D+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  +   Y  D + V   ++     +I  R + VA   + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKMDALTRVL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A++G++ Q +R   +  +RDG   + +
Sbjct: 248 EVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRDGGIDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRERHLLKLI 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +         S  G E  +++V+    +H+     
Sbjct: 368 EKATRQTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRRLVEDYEREHNVPMAD 427

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G    EE           R R      K     R +    S + +SVG 
Sbjct: 428 IAAALALQSRDG----EEFLLAPDPPPDQRERHPRNERKERPERRRSGGAFSTYRISVGK 483

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGI 531
           + K     ++  +    G++R   G I + PD + VE    +  + +  L +T      I
Sbjct: 484 RHKVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELPVKLPRETLKKLEQTRISGVLI 543

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
            L+        ++  ++ G K +  + G
Sbjct: 544 NLRPDRPADKAYKARRNDGGKPRRKRLG 571


>gi|88860375|ref|ZP_01135013.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
 gi|88817573|gb|EAR27390.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
           tunicata D2]
          Length = 609

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 154/610 (25%), Positives = 272/610 (44%), Gaps = 54/610 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +++ + GYV  + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 11  NLSPEILKSVEKLGYVTPSEIQAQCIPFLLNGKDVLGLAQTGTGKTAAFALPLLNNID-- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               +    P  L +APTRELA+QV    E        +  +   GG S + +   L+NG
Sbjct: 69  ----ATVKHPQVLVLAPTRELAIQVAEAFEQYAQFIKGINVLALYGGQSYNVQLSGLRNG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+    +   HLKA+VLDEADEML +GF +D+E I+  +PK+++  +
Sbjct: 125 PQVIVATPGRLIDHLNRGTIKFDHLKALVLDEADEMLRMGFIEDVETIMAKTPKQKQTCL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +   Y +DA  V+I++ N     ++      A + ++NAI+  L+    
Sbjct: 185 FSATMPQQIQKICSTYLEDAEHVHISARNSTVESVEQVYW-QANTHKNNAIIRFLQAETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  TR       ++L +  F    L+G+++QQ R   ++ +++G   + IATDVA
Sbjct: 244 DGAIVFVRTRNDTVEIAELLEQAGFSAAPLNGDMNQQARERTVERLKNGLLDIVIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L LVI+ ++  + E  +HR GRTGRAGR G ++  +  N +     + +   
Sbjct: 304 ARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERHLLRNIIQHTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            ++     PS   + E+  Q++          +D LF + +     + + ++        
Sbjct: 364 STINNVDMPSTALVEEKRIQQLAIKVAASAEQKDILFYNELAEKLSEQLGLVG-----TD 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR----FRDDSRAFKVGG-------------- 457
           +A   L + +       +   +   +  DR        +R  + G               
Sbjct: 419 LAGALLYLAQQSAPIKVKEVAIHREARNDRDGKSRERSARPERDGRARREERAPREPRRD 478

Query: 458 ------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + + +G +   + + ++  +   + I  + IG IR+  D + V
Sbjct: 479 SDKPRERRNSENGPMDTYRIDIGREHGVQVKNIVGAIANEADIPSKFIGDIRLFDDHSTV 538

Query: 512 EV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS----SGFKSKNSQDGATKR 563
           ++     A+ +   ++     + + L     +               +    S + A   
Sbjct: 539 QLPLNMPAETLQHFKKVFICKRPMNLVLHNDKNHSHDKAHGTEKVHNYDKPASANRAKAV 598

Query: 564 FKRFKGASKN 573
            KR   A +N
Sbjct: 599 EKRGPRAPRN 608


>gi|254448048|ref|ZP_05061512.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
 gi|198262474|gb|EDY86755.1| cold-shock deAd box protein a [gamma proteobacterium HTCC5015]
          Length = 586

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 142/564 (25%), Positives = 280/564 (49%), Gaps = 23/564 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L+  GY   + +Q   + P +  +D+L +AQTG+GKT AF L L + +    
Sbjct: 13  LPAPLLKTLAHIGYEQPSPIQAESIPPLMEGRDLLGTAQTGTGKTAAFALPLLTRID--- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +  + P  L +APTRELA+QV    +   A       +   GG  +  + + L+ G 
Sbjct: 70  ---TAVAQPQVLVLAPTRELAIQVSEAFKSYAAGMNQFRVLPIYGGADIGGQIKALKRGP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R K L +  L++VVLDEADEML +GF +D+ +IL  +P++R++ +F
Sbjct: 127 QVIVGTPGRVMDHLRRKTLKLDQLQSVVLDEADEMLRMGFIEDVNWILSHTPEERQIALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+  Y  + V + I ++      I+    LV  +++ +A+  IL      
Sbjct: 187 SATMPAPIKKLSAQYLNNPVEIKIKADTATVDRIEQSYWLVKGTNKLDALTRILEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+         L    ++  A++G+++Q+ R   ++ ++D +  + +ATDVAA
Sbjct: 247 GVIMFARTKNMTVELADKLEARGYRSAAINGDMTQKIRERTIKQLKDEKIDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++  + E  +HR GRTGRAGR G ++  +    +     + +    
Sbjct: 307 RGIDVARVSHVINFDIPYDTEAYVHRIGRTGRAGRDGKAILFVAPRERHLLRAIEKATRQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKH--DPEKIAAGFL 421
           ++     P  E ++++  +++++  +     S +   K++V  LL ++  D + +A   L
Sbjct: 367 TIEPMTLPCRETVQKQREEKLVKRIVEAAEQSPREGSKELVLRLLEENGIDAQHLAVTLL 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            +       P +  P    S   + + + +A +       +      F ++VG K K + 
Sbjct: 427 EMVHTEPTLPAQDFPEPRESAAGKGKRERKAGRRE-----DPVPMESFHIAVGRKHKVKP 481

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYL- 536
             ++  +   +GI  Q IG I++    + V++     ++ ++ L+  V   + + ++ + 
Sbjct: 482 GNIVGAIANEAGIESQHIGRIQLGNVASTVDLPIGMPSEVLEHLKTVVVCGQTLDMQRVS 541

Query: 537 --GGEKPDFRGYKSSGFKSKNSQD 558
             G      +  ++   +  N++ 
Sbjct: 542 ASGKTSSTAKASRAPSKRPANNKK 565


>gi|254521627|ref|ZP_05133682.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
 gi|219719218|gb|EED37743.1| ATP-dependent RNA helicase DeaD [Stenotrophomonas sp. SKA14]
          Length = 648

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 159/595 (26%), Positives = 274/595 (46%), Gaps = 64/595 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++  GY   + +Q A +   L  +DVL  AQTG+GKT AF L + S +  + 
Sbjct: 16  LSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKTAAFALPVLSNIDLQQ 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    +       G  V    GG    ++   L+ G 
Sbjct: 76  IK------PQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQQLSALRRGV 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++R++ +F
Sbjct: 130 HIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKLPEQRQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y +D V V IA++    ++I  R   V+   + +A+  IL      
Sbjct: 190 SATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALTRILEVEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A        L        A++G++ Q +R   + M+++G+  + +ATDVAA
Sbjct: 250 AMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLDILVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++       +    ++ R    
Sbjct: 310 RGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGMLRQIERATRQ 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     PSVEA+ +    +        +++          LL + + E      ++AA 
Sbjct: 370 PIEEMQLPSVEAVNDTRINKFT--TRITETLGAGGLDFYRQLLERFENEQNVPAIEVAAA 427

Query: 420 FLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGG------------------- 457
             ++ +     L  P    P    + R+RF    R  +                      
Sbjct: 428 LAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFERGPRRDDA 487

Query: 458 -------------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                              +G   + +SVG +   +   ++  +   +G+  + IG I +
Sbjct: 488 EGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESRFIGRIDI 547

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYL-GGE---------KPDFRG 545
             D + +++ A    D +  L++     + +Q++ L  GE         KP F  
Sbjct: 548 HDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRFDK 602


>gi|219847371|ref|YP_002461804.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aggregans DSM 9485]
 gi|219541630|gb|ACL23368.1| DEAD/DEAH box helicase domain protein [Chloroflexus aggregans DSM
           9485]
          Length = 550

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 168/538 (31%), Positives = 266/538 (49%), Gaps = 21/538 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +   +   L E GY   T +Q   +   L  +DV+  AQTG+GKT AF L +
Sbjct: 1   MTTFAALGLSDALLHTLRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E           AL +APTRELAVQV   +        + V    GG  + R+ 
Sbjct: 61  IEQVTDEP-------VVQALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +VVGTPGR+ DH+R   L   HL+ VVLDEADEMLD+GF +++E IL  +P 
Sbjct: 114 RGLAQGVQVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPA 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSAT+ PA+ +L   Y +  VRV+IA+E      I      +   D+ +A+  +
Sbjct: 174 ERQTALFSATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILARDKLDALCRV 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVFC TR  V    + L    +   +L G+LSQ  R   ++  R+G+  V 
Sbjct: 234 LDAEMPQLAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ ++  VI+ ++ ++PE+ +HR GRTGRAGR G+++  I    +R  + 
Sbjct: 294 VATDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQT 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPE 414
           + R     +     P++  +  R   R+       +++Q         ++D L  +HD  
Sbjct: 354 IERVTRTRIERCQMPTLADVAARR--RLALRDQLREAMQAPGLTSYMDLLDELTVEHDLR 411

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR----DRFRDDSRAFK--VGGGSRDNFKGSSW 468
            +AA  L++        +  T   L   R    +R    SRA +  V         G + 
Sbjct: 412 TLAAAALKLLLNETETEQVDTITRLEPPRSEQVERGERSSRARRAAVDERPTRRESGMAR 471

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             L++G   +     ++  +   +G++ +SIGAI VQ  ++ V+V    V  + + + 
Sbjct: 472 IRLNLGRNDQIRPADIVGAIANEAGLSGRSIGAIEVQARMSLVDVPRRSVRQVLQALN 529


>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
 gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
          Length = 715

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 166/587 (28%), Positives = 279/587 (47%), Gaps = 32/587 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ E GY   + +QEA +   L  +DV+  AQTG+GKT AF L   S L    
Sbjct: 55  LDARVLAAVEELGYTRPSPIQEATIPLLLDGRDVVGLAQTGTGKTGAFALPALSRLAETT 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
           D    A  P  L +APTRELA+QV    +        V  +   GG     +   L+ GA
Sbjct: 115 DVNGRADTPQVLVLAPTRELALQVADAFDSYAKHLDDVSVLAVYGGSPYGPQLAGLRRGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF ++++ IL S+P  ++  +F
Sbjct: 175 QVVVGTPGRVIDHLERGSLDLSDLQTLVLDEADEMLRMGFAEEVDRILASTPDTKQTALF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  ++  Y      V +A ++   + I  R + V    +  A+  IL      
Sbjct: 235 SATMPPAIRRISAQYLNAPEEVAVARQSTTSATIRQRYLQVGHQWKFEALSRILETEEHD 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  TRA      + L    F+ VA+SG+++Q++R   ++ ++ GR  + +ATDVAA
Sbjct: 295 GVIAFVRTRAGTEELAQKLTRAGFKAVAISGDIAQKQREKTVEDLKAGRVDILVATDVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G +V  +    +   +++ R    
Sbjct: 355 RGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRQGDAVLFMTPRERFLLKQIERTTRQ 414

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPE--KIAA 418
            V     PSV  +     +R             +E+     ++V   + +H  E  ++AA
Sbjct: 415 QVEEMAVPSVADVNAARKRRFADGITRTLERASEEELAVFGEIVAAYVDEHQAEPSRVAA 474

Query: 419 GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDD-------------SRAFKVGGGSRDNF 463
               + + G  L A E+  P     GR                   S      G +R+  
Sbjct: 475 ALGMMAQGGRPLLAREQEIPFGGARGRKDRDGGREGGRDGGRERGTSDGRGSRGPAREPA 534

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G++ + ++VG + +     ++  L    G+   +IGAI ++ + + VE+ AD       
Sbjct: 535 AGNATYWIAVGHQDRVRPGNIVGALANEVGLPASAIGAIDLRGNHSLVELPADLTSAQLE 594

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK-RFKRFKG 569
               +  I  + LG         K +G  ++  +DG  +  F++ +G
Sbjct: 595 AA-ANAEINGRRLG-------LRKDTGRPTRAERDGEHRGGFRKDRG 633


>gi|320093766|ref|ZP_08025614.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979303|gb|EFW10798.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 800

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 180/609 (29%), Positives = 289/609 (47%), Gaps = 50/609 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+++ G+V  T +Q   + P L  +DV+  AQTG+GKT AFGL L + + A+ 
Sbjct: 57  LPDELLQAVTDMGFVTPTPIQAEAIPPLLDLRDVVGIAQTGTGKTAAFGLPLLAIVDADE 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  A  AL +APTRELA+Q    +E   A+T  +V V   GG     +   L+ GA
Sbjct: 117 ------KAVQALVLAPTRELAMQSAAAIEDFAARTAELVVVPVYGGSPYGPQIGALKRGA 170

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I    L++S ++ +VLDEADEML +GF +D+E I  S+P  R   +F
Sbjct: 171 QVVVGTPGRVIDLIEKGALDLSGVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALF 230

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---------NAIV 236
           SAT+ PAI  +A+ + KD V+V ++ E+     I     +V    +           A  
Sbjct: 231 SATMPPAIEKVAREHLKDPVKVAVSEESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQH 290

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                  A  AIVF  TR  V   +  L+   F+   +SG+++Q ER   ++ ++ G   
Sbjct: 291 IAAGQEDADAAIVFVRTRVDVEEVSLELSGRGFRAAGISGDVAQTERERMVERLKSGSLD 350

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G S+         R 
Sbjct: 351 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRSLTFFTPREHTRL 410

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQ-GDEKKMVDVLLAKHDPE 414
            R+ +     +     PS  A+ E  A+R+L+     ++  + G  +++++ + A  D E
Sbjct: 411 RRIEKLTGTPMEEVAIPSPAAVSEFRARRLLEGVGARVERGRLGMYRELLEQMAASLDVE 470

Query: 415 KIAAGFLRIH----------------------RAGLCAPEEITPVSLVSGRDRFR---DD 449
            +AA  +                           GL    E    S  +GRD+ R     
Sbjct: 471 DVAAALIAQAVGDEGPAPRAESDRRGRGRARREEGLDESGEFVGASFEAGRDKDRPLKGG 530

Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
               +  GG R      + + + VG K + +   ++  +    GI+ + IG I + P  +
Sbjct: 531 RDGARRRGGGRAVAGPGTRYRVEVGRKDRVKPGSIVGAIAGEGGIDGRDIGHIDIFPTFS 590

Query: 510 FVEVSAD-GVDLLRRTVK-LDKGIQLKYLGGEKPDFRGYKSSGF-----KSKNSQDGATK 562
            V+++AD   + L R  K    G QL+    E P  R     G      + +   D   +
Sbjct: 591 LVDITADLSAEQLSRISKGYVSGRQLRIRVDEGPGRRDRFERGGFERPSRGERRSDRDDR 650

Query: 563 RFKRFKGAS 571
             +  +G  
Sbjct: 651 SEREDRGGR 659


>gi|163848628|ref|YP_001636672.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526563|ref|YP_002571034.1| DEAD/DEAH box helicase domain-containing protein [Chloroflexus sp.
           Y-400-fl]
 gi|163669917|gb|ABY36283.1| DEAD/DEAH box helicase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450442|gb|ACM54708.1| DEAD/DEAH box helicase domain protein [Chloroflexus sp. Y-400-fl]
          Length = 552

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 161/538 (29%), Positives = 257/538 (47%), Gaps = 19/538 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +   LS  GY   T +Q   +   L  +DV+  AQTG+GKT AF L +
Sbjct: 1   MTTFAELGLSDALVSTLSGLGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    R + A    AL +APTRELAVQV   +        + V    GG  + R+ 
Sbjct: 61  IE-------RVTDALVVQALVLAPTRELAVQVAEAIHRYGRHRSLRVLPIYGGQPIERQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +VVGTPGR+ DH++   L   HL+ VVLDEADEMLD+GF +++E IL  +P 
Sbjct: 114 RGLAQGTQVVVGTPGRVLDHLKRGSLRFDHLRMVVLDEADEMLDMGFAEELEAILQLTPT 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSAT+ PA+  L   Y +  VRV+IA+E      I      V   D+ +A+  +
Sbjct: 174 ERQTALFSATLPPAVQNLTLRYTRQPVRVSIAAEQLTTPRIRQTYYEVLARDKLDALCRV 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVFC TR       + L    +   +L G+LSQ  R   ++  R+G+  V 
Sbjct: 234 LDAEMPQLAIVFCRTRQEADDIGERLQGRGYAAESLHGDLSQAARDRVMRRFREGQLDVL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ ++  VI+ ++ ++PE+ +HR GRTGRAGR+G+++  I    +R  + 
Sbjct: 294 VATDVAARGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGREGVAITFITPRERRMLQI 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + R     +     P++  +  R    ++        D        +VD L    D   +
Sbjct: 354 IERVTRTRIERCQMPTLADVAARRRSALVDQLRTAMADPALAGYTTLVDELAGTGDLRTV 413

Query: 417 AAGFLRIHRAGLCAPEEIT------PVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSW 468
           AA  L++        +  T      P +    R+R    +R+ +      S    +    
Sbjct: 414 AAAALKLLLNEDQTDQVDTITRLDPPPAERPQRERSERSARSPRTKADTRSERVERTMVR 473

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             +++G   +     ++  +   SG+  +SIG I ++   + VEV       + + + 
Sbjct: 474 LQINLGRNDQIRPADIVGAIANESGLPGRSIGEIEIRARTSVVEVPRRAAQQVLQALN 531


>gi|332532397|ref|ZP_08408275.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038040|gb|EGI74487.1| cold-shock DEAD-box protein A [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 592

 Score =  299 bits (766), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 151/595 (25%), Positives = 265/595 (44%), Gaps = 51/595 (8%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +            P  
Sbjct: 1   MGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFALPLLNNIDPS------VKQPQI 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA+QV    E        +  +   GG S   +   L+ GA ++V TPGRL 
Sbjct: 55  LVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSALRRGAQVIVATPGRLI 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI    +    L+A+VLDEADEML +GF DD+E I++ +P++++  +FSAT+   I  +
Sbjct: 115 DHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREKQTCLFSATMPKQIQNI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  Y  +  +V+I++ N   S ++      A   ++ AIV  L     + AIVF  TR  
Sbjct: 175 SSKYMNNPEQVHISARNSTVSSVEQ-VFWNASVHKNKAIVRFLEAEQYEGAIVFVRTRND 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             +  ++L    F    L+G+++QQ R   +  ++ G   + IATDVAARG+D+  L LV
Sbjct: 234 TVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIATDVAARGLDVDRLSLV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ ++  + E  +HR GRTGRAGR G ++  +  N +   + + R     +     P+ +
Sbjct: 294 INYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIRHTKSEIAQVELPTAK 353

Query: 377 AIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
            + E+  + +          +D  F + +  +  + +D+ L     E +A   L + +  
Sbjct: 354 IVEEKRIEALQAKLTIALENKDITFFNEVATNMAEKLDLPL-----ESLAGALLCLAQQQ 408

Query: 428 LCAPEEITPVSLVSGRDRFRDDS---------------------RAFKVGGGSRDNFKGS 466
                E   +      +R   +S                        K    +  +    
Sbjct: 409 SPIKVEEVKIQPRERNERNDRNSRNDRGDRGRRNERGGERGGERAERKPRERNSRDAGPM 468

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLR 522
             + + VG +   + + ++  +   + I+ + IG IR+  + + V++      D +D  +
Sbjct: 469 DTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQLPQNMPKDVLDHFQ 528

Query: 523 RTVKLDKGIQLKYLGGEKP----DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           +     + + L     + P      R  + +G K ++     + R  +  G  K 
Sbjct: 529 KVFICKRPMGLTITQDQGPAEPRGERSERPAGDKKRSFNKDDSARGDKRTGPRKE 583


>gi|256376393|ref|YP_003100053.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255920696|gb|ACU36207.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 561

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 167/561 (29%), Positives = 268/561 (47%), Gaps = 24/561 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  ALS  GY   T +Q   + P    +D+L  A TG+GKT AF L + 
Sbjct: 10  TSFADLGLRPELLRALSGLGYEEPTPIQREAIVPLTEGRDLLGQAATGTGKTAAFALPVL 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R     AP AL + PTRELAVQV   +     + G  V    GG  + R+ R
Sbjct: 70  ERLAQVEKR---GDAPFALVLVPTRELAVQVSEAVHRYGRELGARVLPIYGGQPIGRQLR 126

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VV TPGR  DH+    LN+  L+ VVLDEADEMLD+GF +D++ IL  +PK+
Sbjct: 127 VLERGVDVVVATPGRAVDHLGRGTLNLEDLQVVVLDEADEMLDMGFAEDLDTILAETPKQ 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+ P I  LA+ +  +  R+ I  E  +      +   A +V  + +  A+ 
Sbjct: 187 RQTVLFSATMPPRIDKLARQHLTEPARITINQERAEPGEAPRVRQVAYVVPRAHKPAALG 246

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       AIVFC TR  V + T+ L    ++  +L G +SQ++R   +  +R+G A 
Sbjct: 247 RVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLHGGISQEQRDRVMARLRNGTAD 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  V++  + S PE+ +HR GR GRAGR+G+++ +         
Sbjct: 307 LLVATDVAARGLDVEQLTHVVNYNVPSAPESYVHRIGRVGRAGREGVAITLAEPREHGML 366

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHD 412
           + + R     +  E  P+V  +R R  +  L      +S+  DE +   V++     + D
Sbjct: 367 KTIERVTKQRITMEKVPTVADLRARRLE--LTRAALHESLLEDELEGFRVVVESLSDEFD 424

Query: 413 PEKIAAGFLRIHRAGLCA---PEEITPVSLVSGRDRFR-DDSRAFKVGGGSRDNFKGSSW 468
             ++A   +++      A    EEI  V+  S R R     S   +     R    G + 
Sbjct: 425 VMEVALAAVKLAHEASGAAADEEEIPEVAHRSDRSRGGVAGSDGQRRERRVRPPTAGMTR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
             +  G       + ++  +   + +  + IGAI +    + VEV       +   +   
Sbjct: 485 LFVGAGRSSGIRPQDIVGAIAGEARLQGRDIGAIEITDRFSLVEVPESSAQHVITAL--- 541

Query: 529 KGIQLKYLGGEKPDFRGYKSS 549
           +G  +K   G K   R  + +
Sbjct: 542 RGATMK---GRKVTVRRERDA 559


>gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 559

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 157/549 (28%), Positives = 271/549 (49%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRVLAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR--------DDSRAFKVGGGSRDNFKGSSW 468
           LR    G    L A E   P+   +     R           R  +         +G + 
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAEGRAR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|212637255|ref|YP_002313780.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
           piezotolerans WP3]
          Length = 611

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 173/609 (28%), Positives = 285/609 (46%), Gaps = 45/609 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           +++          ++P  L +APTRELAVQV             +  +   GG S+H++ 
Sbjct: 66  NSIDPNT------NSPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK
Sbjct: 120 NALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R++ +FSAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +
Sbjct: 180 QRQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + 
Sbjct: 240 LEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDII 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R     +     PS E + ER   R+ +   + +  DS+   +  +  +    + D +
Sbjct: 360 IERATKSRISPMDIPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAKLCQELEVDTD 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR-----------------DRFRDDSRAFKVGG 457
            +AA  L+  +                 R                 DR R +SR      
Sbjct: 420 VLAAALLQQVQKDRPLQLPSMNERQRDNRDDRNSRDRNDRNSRDRGDRPRRESRPTPANI 479

Query: 458 GSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
           GS D+ K         + + VG         ++  +   + I+ + IG I++   +T ++
Sbjct: 480 GSADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDQVTAID 539

Query: 513 V----SADGVDLLRRTVKLDKGIQLKYLGGEK------PDFRGYKSSGFKSKNSQDGATK 562
           +      D +  L++     + + ++   GEK       D R  +     S + +    +
Sbjct: 540 LPDGMPKDVLAHLKKVRVCGRPLNIREAAGEKFENTSGGDSRPPRRPRKPSGDRRPSGDR 599

Query: 563 RFKRFKGAS 571
           +  R   A 
Sbjct: 600 KPHRKGPAK 608


>gi|317970363|ref|ZP_07971753.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0205]
          Length = 598

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 156/567 (27%), Positives = 269/567 (47%), Gaps = 41/567 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I EAL E GY   + +Q A +   +  +D++  AQTG+GKT AF L + + L    
Sbjct: 38  FSPEILEALEEIGYSEPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPMLAALDETQ 97

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV    +    K   +  +   GG     +   L+ G 
Sbjct: 98  ------RTPQVLVLTPTRELAIQVADSFKSYATKLPHLRVLPVYGGSDFRDQIHKLKRGV 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L   P+KR++++F
Sbjct: 152 QVVVGTPGRVMDHMRQGTLDVSGLRSLVLDEADEMLRMGFIDDVEWVLSQLPEKRQVVLF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  ++  Y      + I ++    S I  R + V    +  A+  +L     +
Sbjct: 212 SATMPSEIRRISHQYLNSPAEITIKTKGSDSSRIQQRFITVNGPMKLEALSRVLEAETKE 271

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L    + V  L+G+++Q +R   ++ +++G   V +ATDVAA
Sbjct: 272 GVIIFARTKAITVTVAEALEAKGYGVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R    
Sbjct: 332 RGLDVDRISLVINYDIPFDSEAYVHRIGRTGRAGRTGNAILFVTPRERRFITGLERAVGR 391

Query: 366 SVVWEPAPSVEAIRE----RDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---------- 411
            +     P+  +I +    R  +R+ +    L+S +         LL++           
Sbjct: 392 PIEPMEIPTNASINQSRLDRLRERLSETVKGLNSEETSNLSEQQALLSEIIKRVGQESEV 451

Query: 412 DPEKIAAGFLRIH--RAGLCAPEEITPVSLV------SGRDRFRDDSRAFKVGGGSRDNF 463
            PE++A   L++      L   ++   +            DRF D  R  +   G+R   
Sbjct: 452 APEQLALAALQMAVGDQPLLVHDDENWIRQQPQSRDGRRNDRFGDRDRGPRNAPGARRGP 511

Query: 464 KG--------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-- 513
           +            F + VG + + +   ++  +   SG+N +SIG I++    + V++  
Sbjct: 512 REQSGPPEDHMDRFRIEVGWRDRIKPGNIVGAIANESGLNGRSIGRIQIFDSHSLVDLPK 571

Query: 514 --SADGVDLLRRTVKLDKGIQLKYLGG 538
               D    L+R   L++ +Q+  + G
Sbjct: 572 GMPEDVFHNLKRLKVLNRELQISRVQG 598


>gi|254482185|ref|ZP_05095426.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037510|gb|EEB78176.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 618

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 159/614 (25%), Positives = 278/614 (45%), Gaps = 65/614 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL++ GY   +++Q A +   +  +DVL  AQTG+GKT AF L + + L A +
Sbjct: 15  LSEPLQKALADVGYETPSAIQAATIPALIEGRDVLGQAQTGTGKTAAFALPILAQLQASS 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P  L +APTRELA+QV    +           V   GG     + R LQ G 
Sbjct: 75  KK------PQVLVLAPTRELAIQVAEAFQKYARYLKDFHVVPIYGGADYRGQLRQLQRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+IL+ +P  R++ +F
Sbjct: 129 QVVVGTPGRVMDHMRRGSLDLSALRTLVLDEADEMLRMGFIDDVEWILEQTPDDRQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +AK +  + V V I  +   +  I  R  ++A   + +A+  IL      
Sbjct: 189 SATMPTAIARIAKQHLNNPVHVAIEVQTMTNKSIRQRVWMMAGVHKLDALTRILEVEDFD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR + +   + LA   +   AL+G++ Q++R   +  ++ G   + +ATDVAA
Sbjct: 249 GVIVFVRTRIATAEIAEKLAARGYSAAALNGDIPQKQREATIDNLKRGTIDILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E  +HR GRTGRAGR+G ++       +R    + +    
Sbjct: 309 RGLDVERISHVINYDIPYDVEAYVHRIGRTGRAGREGDAILFAANRERRLLRAIEKATG- 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
           ++     PSVE + ++   +  Q     +++   E  +   L+  +  E       IAA 
Sbjct: 368 TIEKMELPSVEQVTDKRIGKFKQR--ITETLDTVELDLFRKLVEDYQGEYGVPVMDIAAA 425

Query: 420 FLRI------------------HRAGLCAPEEITPVSLVSGRDR--FRDDSRAFKVG--- 456
              +                   R+G   P +  P    S +D+      SR  +     
Sbjct: 426 LGAMAQGSKLLVAKPGKERSGQERSGQERPGKEKPRKDTSKKDKSAKERPSRTDRAEDSK 485

Query: 457 ---------------------GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
                                       KG   + + VG +   +   ++  +   + I+
Sbjct: 486 KKFDSDKKKTRSSADSSPGGVRPESTPDKGLERYRIEVGHEHDVKPANIVGAIANEAEID 545

Query: 496 RQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF 551
            + IG I +  D + V++      +    L+      + +++     +    + ++    
Sbjct: 546 AEYIGRIEIYDDHSTVDLPEGMPKEIFTHLKSVWVSGQRLKISRA-DKSAGKKPHRKGPA 604

Query: 552 KSKNSQDGATKRFK 565
           K K+ + G  KR  
Sbjct: 605 KRKSKKSGPPKRDH 618


>gi|269468408|gb|EEZ80073.1| hypothetical protein Sup05_1317 [uncultured SUP05 cluster
           bacterium]
          Length = 614

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 153/606 (25%), Positives = 273/606 (45%), Gaps = 51/606 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L   GY   + +QE  +   L  +D++  AQTG+GKT AF L L   +    
Sbjct: 19  LSDSILKVLDSIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFALPLLDNIDLS- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 +AP  L +APTRELA+QV   ++           +   GG S   + R L+ G 
Sbjct: 78  -----LNAPQLLILAPTRELAIQVSEAVQVYARGLKGFHVLPIYGGQSYDIQLRPLKRGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H VVGTPGR+ DHI+   L +  LK+ VLDEADEML +GF DDI+++++  P++R++ +F
Sbjct: 133 HCVVGTPGRVMDHIKKGTLKLDQLKSFVLDEADEMLKMGFIDDIKWVMERIPEQRQIALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT+   I  +A+ +  +   V + ++      I  +  LV   S + +A+  IL     
Sbjct: 193 SATMPNIIKRVAEKFLNNPKIVKVKTKTETAPTIGQKYCLVGGLSQKLDALTRILEVTEF 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+      ++ L+   F   A++G++ Q +R   +   + G   + +ATDVA
Sbjct: 253 DAMIIFARTKTLTIELSEKLSARGFSAEAINGDIQQSQREKIINKFKKGGIDILVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ ++  + E  +HR GRTGRAGR+G ++  +    +R    + R   
Sbjct: 313 ARGLDVPRISHVVNYDIPQDAETYVHRIGRTGRAGREGEAILFVSHRERRMLNNIERVTR 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-------KIA 417
             +     P+ + I E+      +     ++I   +  + + L+ +           K+A
Sbjct: 373 QKIEPLELPTAKIINEKRIDTFKKR--ITETINNQDLSVFEKLVTEFQEANEEIAHLKVA 430

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK--GSSWFSLSVGS 475
           A    I +     P  ++      GRD+   + +   V   S  +        + L VG+
Sbjct: 431 AALAHIAQG--NEPLLLSEKEPSFGRDQKPGEEKVVPVEANSLKDHPKIPMRRYKLEVGN 488

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGI 531
               +   ++  +   + ++ + IG+I++  + + V    E+  + + +L++TV   K +
Sbjct: 489 NNNIKPGNILGAIANEADMDSEYIGSIQIFDNFSTVDLPDEMPEEVLKVLQKTVVNGKRL 548

Query: 532 QLKYL---------GGEKPDFRGYKSSGF-----------------KSKNSQDGATKRFK 565
            +  L         GG KP  R +    F                   +        +F 
Sbjct: 549 NIVELTEKNNKATVGGSKPGKRNFGRGKFSKGGRNDRRGGRDSRGGDKRGGDRNRKPKFS 608

Query: 566 RFKGAS 571
           R K   
Sbjct: 609 RAKPKK 614


>gi|319441074|ref|ZP_07990230.1| ATP-dependent RNA helicase [Corynebacterium variabile DSM 44702]
          Length = 732

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 159/566 (28%), Positives = 264/566 (46%), Gaps = 31/566 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+ + GYV  + +Q A +   +   DV+  AQTG+GKT AF L   S L    
Sbjct: 76  LPDRILAAVEKVGYVTPSPIQAATIPALMDGHDVVGLAQTGTGKTAAFALPALSRLD--- 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +    P  L +APTRELA+Q     E   +  G V  +   GG     +   L+ GA
Sbjct: 133 ---TTERHPQVLVLAPTRELALQSADAFESFASHIGGVSILPIYGGAPYGAQLSGLRRGA 189

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    L++SHL+ +VLDEADEML++GF++D+E IL  +P  R++ +F
Sbjct: 190 QVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEMLNMGFQEDVERILADTPDSRQVALF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y  D     + SE R   +I    ++V+  ++ +A+  IL      
Sbjct: 250 SATMPSAIRRLSKQYLNDPQEYTVKSEQRTGDNITQDYLMVSHRNKLDALTRILEVTEFD 309

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T++        L    F+  A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 310 AMIIFVRTKSDTEELADKLRARGFEAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA 369

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R    
Sbjct: 370 RGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAGRTGRAILFVTPRERRLLKNIERATKS 429

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEKIAAGFL 421
                  P V+ + E    +           +  +  +++V      +D  P  IAA   
Sbjct: 430 HPNEIQLPGVDEVNEARKNKFFTSITEARKGKQVDIFRELVTEYAEANDVTPTDIAAALA 489

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR---------------DNFKGS 466
              +       +         R    D  R  +  G  R                N K  
Sbjct: 490 AKLQGREAFYVQEIQEPQRRERRTRDDWDRGEQDSGVHRPFSERFNRDAPKVTDRNGKEL 549

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR 522
           + + +SVG +Q+     ++  L    G+N +  G I +  + + VE+ A    D  + L 
Sbjct: 550 AVYRVSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADLPKDVFEQLD 609

Query: 523 RTVKLDKGIQLKYLGGEKPDFRGYKS 548
           +T    K I ++   G  P  R  ++
Sbjct: 610 QTRISGKLINIEPDPGA-PAGRPARN 634


>gi|117621384|ref|YP_857155.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562791|gb|ABK39739.1| ATP-dependent RNA helicase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 642

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/638 (25%), Positives = 284/638 (44%), Gaps = 73/638 (11%)

Query: 1   MKIFENIP--------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           M   E +P          + +AL + GY   + +Q A +   +   D+L  AQTG+GKT 
Sbjct: 12  MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA 71

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGG 111
           AF L L S L A N           L +APTRELA+QV    +           +   GG
Sbjct: 72  AFALPLLSRLEAGNRN------TQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGG 125

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S   + R L+ GA +VVGTPGR+ D IR K L++S LKA+VLDEADEML +GF DD+++
Sbjct: 126 ASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDW 185

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I++  P  R++ +FSAT+   I  +A+ + K    + IAS+    + I  R   V    +
Sbjct: 186 IMEQCPAGRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHK 245

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  +L     +  +VF  T+ +       LA       AL G++ Q+ R   +  +R
Sbjct: 246 LDAMTRLLEVEPYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLR 305

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + IATDV ARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +   
Sbjct: 306 QGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR 365

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R    +      ++     PS E I +    +  +     +++ G+E ++   L+ + 
Sbjct: 366 ERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKER--IRETMMGEELEIYVNLVNEL 423

Query: 412 DPEKIA--------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
             E  A           L      L   + I      +G DR   + R F   GG     
Sbjct: 424 IEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPVFNAGNDRGGFERRDFNDRGGRDFAD 483

Query: 464 KG----------------------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGA 501
           +G                         + + VG+    +   ++  +   + I  + IG 
Sbjct: 484 RGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGN 543

Query: 502 IRVQPDLTFVEVS----ADGVDLLRRTVKLDKGIQL--------------------KYLG 537
           I +  D + V++     A+ ++++++     + +Q+                    +   
Sbjct: 544 IDIADDFSTVDLPKGMSAEVLEVIKKARVCQRPLQISRYTEVPAGSNTAPRPPRGDRPFR 603

Query: 538 GEKPDFRGYKSSGFKS--KNSQDGATKRFKRFKGASKN 573
           G++P  +  +  G +   K+ ++G   + ++F G  ++
Sbjct: 604 GDRPFNKDRRPQGDRPFNKDRREGGFDKGRKFGGKRRD 641


>gi|194336034|ref|YP_002017828.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308511|gb|ACF43211.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 599

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 164/565 (29%), Positives = 263/565 (46%), Gaps = 40/565 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL++ GY N T +Q   +   L  +DVL  AQTG+GKT AF L + S +  E+
Sbjct: 8   LAEPLMRALADVGYENPTPIQAQTIPLILEGRDVLGQAQTGTGKTAAFALPILSNIDLEH 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +           V   GG     + R L+ G 
Sbjct: 68  AE------PQALVLAPTRELAIQVAEAFQRYAEHLKGFHVVPIYGGQDYGIQLRMLRRGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R   LN++ LK +VLDEADEML +GF DD+E+ILD +PK R++ +F
Sbjct: 122 HIVVGTPGRVMDHMRRGSLNLASLKCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y  +   V I ++      I  R  +V  S + + +  IL      
Sbjct: 182 SATMPPVIRRIAQKYLHNPAEVTIQTKTTTVDTIRQRYWIVGGSHKIDILTRILEVEPFD 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       + L    +   AL+G++ Q +R   +  +++G   + IATDVAA
Sbjct: 242 GMLIFVRTKTMTLELAEKLQARGYGAAALNGDMPQNQRERTVDQLKNGALSIVIATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + R  + 
Sbjct: 302 RGLDVERISHVINYDIPSDTESYVHRIGRTGRAGRAGDAILFVSPREKNMLYSIERATHS 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEKIAAG-- 419
            +     P+ E I  +   +  Q     D+I  ++     K+++    +HD   I A   
Sbjct: 362 RIELMELPTTEVINNKRIAKFNQR--ITDTIAAEDLGFFTKLIEQYCHEHDVSAIEAAAA 419

Query: 420 -----------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------G 458
                       L        + EE        G DR R   R                G
Sbjct: 420 LASMVQGETPLLLSNKPEKSRSYEEREGSGRDRGSDRERSTDRGRSSDRDRGPVKKRTKG 479

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                +G   + L VGS+   +A  ++  +    G++ +S+G I +    + VE+     
Sbjct: 480 ETYGDEGKERYRLEVGSEHGVKAGNILGAILNEVGLDPESVGHISINEGYSTVELPQGMP 539

Query: 519 D----LLRRTVKLDKGIQLKYLGGE 539
           D     LR      + ++L  +  +
Sbjct: 540 DNVFHELRTVRVCGRQLRLSKMDDQ 564


>gi|325261674|ref|ZP_08128412.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
 gi|324033128|gb|EGB94405.1| ATP-dependent RNA helicase, DEAD/DEAH family [Clostridium sp. D5]
          Length = 527

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 150/533 (28%), Positives = 263/533 (49%), Gaps = 32/533 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I +A+ + G+   + +Q   +      KD++  AQTG+GKT AFG+ L   
Sbjct: 6   FEDLGLCPEIVKAVKKMGFEEASPIQAKAIPVMKSGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N +        A+ + PTRELA+QV  E+  L      +  +   GG  +  + R 
Sbjct: 66  IEPKNKK------LQAVVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVTQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++GTPGR+ DH+R K + +  +  +VLDEADEML++GFR+DIE IL+  P++R
Sbjct: 120 LKSGTQLIIGTPGRVMDHMRRKTIKMDEVHTIVLDEADEMLNMGFREDIETILEGVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  + K +QK+A  V +  +     +I+     V    ++  +  +L 
Sbjct: 180 QTVLFSATMPQAILDITKRFQKNAEIVKVTKKELTVPNIEQYYYEVKPKSKEEVLARLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+  V      L    +    L G+L QQ+R   +Q  R G+  + +A
Sbjct: 240 IYSPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQQQRDRVMQGFRSGKTDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR+G S   +      + + + 
Sbjct: 300 TDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRSFSFVSGKEVYKLKEIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLA-KHDPEKI 416
           R     +  +  PS+  +     + IL    + +  + +    + + + +    +    +
Sbjct: 360 RYCKTKIYAQKVPSLNDVANTKMENILGEIDNIIETEDLTKYLQAIENKVNESDYTAMDM 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA FL++                 SG++    +   F   G       G     +++G K
Sbjct: 420 AAAFLKLS----------------SGQNEVSPEEMEFGDTGAEEA---GMVRLFINIGKK 460

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            KA+   ++  +   SGI  + IG+I +    TFVEV  +    +   +   K
Sbjct: 461 NKAKPGDIVGAIAGESGIPGKLIGSIDMYDKYTFVEVPKEYAREVLSAMDHAK 513


>gi|326795184|ref|YP_004313004.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326545948|gb|ADZ91168.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 619

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 150/588 (25%), Positives = 259/588 (44%), Gaps = 38/588 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     I +A+++ GY   +++Q   +   L   D+L  AQTG+GKT AF L L S
Sbjct: 9   TFDSLGLAAPILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTAAFALPLLS 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +   N       +   L +APTRELA+QV    +           +   GG+S   + R
Sbjct: 69  RIDVTN------KSTQLLVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQLR 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +P  
Sbjct: 123 QLRRGVQVVVGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTPDG 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+ P I  +A  +  +   V I ++    + I  +   V+   + +A+  IL
Sbjct: 183 HQTALFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTRIL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     I+F  T+A+     + L        AL+G++SQ  R   +  ++ G+  + +
Sbjct: 243 EMNEHDGMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDILV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  +++
Sbjct: 303 ATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQQI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DP 413
            R    ++     P+   I E+   R  Q     D+I  ++      L A +      DP
Sbjct: 363 ERATRQAIERMQLPTASDINEQRVARFKQR--ITDTIDNEDLDFFIELAASYQKENDVDP 420

Query: 414 EKIAAGFLRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            K+ A    + +                 E           +R     R          +
Sbjct: 421 VKLGAALAHMAQGKTPLLLKELEVRQERRERRDRDDRPDRAERAPRRHRPVTADAMPLKD 480

Query: 463 FK--GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD- 519
                   + + VG +   +   ++  +   + +  + IG I +  D   V++ AD  + 
Sbjct: 481 NPSMDMQRYVVQVGYRDGVKPGNIVGAIANEADVESRYIGHIEIYEDFATVDLPADLSEQ 540

Query: 520 ---LLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
               L +T    +  ++  L     D                G  +R 
Sbjct: 541 AIGKLNKTRICGQRTEISVL----KDADALNERASNPSRRPAGGNRRP 584


>gi|302382668|ref|YP_003818491.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193296|gb|ADL00868.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 728

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 251/576 (43%), Positives = 349/576 (60%), Gaps = 11/576 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLR---------EKDVLVSAQTGSGKTVAFGLAL 58
              +  ALSERGY   T VQ A+L   L           +D+LVSAQTGSGKTVAFGLAL
Sbjct: 7   HPALDRALSERGYAEPTPVQAAVLEAALSEDGSVDAESGRDLLVSAQTGSGKTVAFGLAL 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A TLL E +RF+   APLAL IAPTRELA QV  EL WLYA+TG  +  C+GG+    ER
Sbjct: 67  APTLLGEAERFTDFGAPLALVIAPTRELAQQVASELTWLYAQTGARIVSCVGGMDPKVER 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GAHIVVGTPGRL DH+    L++S  +AVVLDEADEMLD+GF++D+ FILD++P 
Sbjct: 127 RALERGAHIVVGTPGRLRDHLERGALDLSEARAVVLDEADEMLDMGFQEDLTFILDAAPP 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR LMFSAT++  I  LAK YQ+DA+R++  + N+ H+DI+Y+A+  A ++ + A+VN+
Sbjct: 187 TRRTLMFSATLARDIVQLAKTYQRDAIRIDTVAGNKSHADIEYKAIRCAPNEIELAVVNV 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LRY  A  A+VF +TR  V   T  L E  F VV LSGEL+Q  RS ALQ +RDG ARVC
Sbjct: 247 LRYFEAPGALVFANTRERVKHLTASLRERGFSVVGLSGELTQSARSEALQALRDGHARVC 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+DLPDL LVIHAE+  N   LLHRSGRTGRAG+KG+SV ++    +R+ E 
Sbjct: 307 VATDVAARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLLVSYTRRRKVEL 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-DPEKIA 417
           + + A +   W   PS E I E+D +R+L DP     ++  E   +  LL +   PE++A
Sbjct: 367 MLQSAAIVAEWSGPPSAEMILEKDRERLLADPALTAPVEDAEALELGRLLLERTTPEQVA 426

Query: 418 AGFLRIHRAGLCAPEE-ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A  +R++R  L APE+      +   ++  ++D                 +WF +++G  
Sbjct: 427 ASLIRLYRQKLPAPEDVYDDDRMKRQQETGKNDRGQTDAPFQDFARGGEMAWFRINIGRD 486

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           + A+ +WL+P +CR   + ++ IG+I++    T  E++ +     +  V       +   
Sbjct: 487 KNADPKWLLPTICRIGHVTKRDIGSIKIFDRETKFEITKEAKAKFKAAVAASTEDGVTVQ 546

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
               P  +   +S +          +R +R   A+K
Sbjct: 547 DAVAPGPKERPASRWDKTPVGGERPERAERKPWANK 582


>gi|162448970|ref|YP_001611337.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159552|emb|CAN90857.1| ATP-independent RNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 624

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 164/571 (28%), Positives = 257/571 (45%), Gaps = 37/571 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   L+E GY   T +Q   +   L  +D+L  A TG+GKT AF L L   L    
Sbjct: 15  IAPALLGVLAELGYEEPTPIQREAIPHLLTGRDLLGQAATGTGKTAAFALPLLQRLEIGG 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P AL + PTRELA+QV   +     + GV V    GG    ++ R L+ G H
Sbjct: 75  E---PPRLPEALVLVPTRELAMQVAEAMHRYGRRLGVQVLSVYGGQPFGQQLRALRRGVH 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  ++ VVLDEADEMLD+GF + +E IL ++P  R+ ++FS
Sbjct: 132 VVVATPGRTLDHIGRGTLALDGIRTVVLDEADEMLDMGFAEALEEILSATPGARQTVLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P I  +A  + ++ VRV I    +   +   +   A +V  + +  A+  +L    
Sbjct: 192 ATLPPRIAAIAGRHLREPVRVKIAGEKAAPGELPRVRQTAYIVPRAHKSAALTRVLDMED 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AI+FC TR  V   T+ L    ++  AL G  SQ+ R   +   R G A + +ATDV
Sbjct: 252 PSSAILFCRTRNEVDELTEALRARGYEAQALHGGFSQEHRDRVMARFRAGTAELLVATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  VI+ ++   PE  +HR GRTGRAGR+G ++ ++          + R  
Sbjct: 312 AARGLDIEHVSHVINYDVPCAPEVYVHRIGRTGRAGREGAAITLVEPREHYLIRNVERLT 371

Query: 364 NVSVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              +     P+V  +R R  +  R       ++      + +V+ L  + D   IAA  +
Sbjct: 372 GQRIEAATLPTVADLRARRLELTRASLREALIEGGAERFRVVVEGLADEFDVMDIAAAAV 431

Query: 422 RIHRAGLCAPEEITP------VSLVSGRDRFRDDS-----------------RAFKVGGG 458
           ++         E              G +R RDD                  R  +    
Sbjct: 432 KLAHDATEGDREEEEAEIPSFRPPPRGPERARDDRAPRGPAGARGRPGEAQARPRRETRE 491

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           +R+     +   +S G         L+  +   + ++ + IGAI +    + VEV AD  
Sbjct: 492 ARETDGNVARLYVSAGRNAGIRPADLVGAIANEASLSSRDIGAIEIADGFSTVEVPADAA 551

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSS 549
           D +   ++         L G K   R   + 
Sbjct: 552 DAVIEALRA------TRLKGRKVQVRRDDAG 576


>gi|213579752|ref|ZP_03361578.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 556

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 154/528 (29%), Positives = 246/528 (46%), Gaps = 32/528 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I EAL++ GY   + +Q   +   L  +DVL  AQTGSGKT AF L L 
Sbjct: 6   TTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L  E        AP  L +APTRELAVQV   +         V  V   GG     + 
Sbjct: 66  NNLDPE------LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVVGTPGRL DH++   L++S L  +VLDEADEML +GF +D+E I+   P+
Sbjct: 120 RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +  +FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  
Sbjct: 180 GHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + 
Sbjct: 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKH 411
           + R   +++     P+ E + +R  ++    +Q  L    +        K        + 
Sbjct: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEEL 419

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------------RDDSRAFKVGG 457
           D E +AA  L++ +     P  + P + +  +  F                     +   
Sbjct: 420 DLETLAAALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPR 477

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
             R +      + + VG     E R ++  +     I+ + IG I++ 
Sbjct: 478 RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF 525


>gi|25027815|ref|NP_737869.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259506205|ref|ZP_05749107.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|23493098|dbj|BAC18069.1| putative cold shock DEAD-box protein A [Corynebacterium efficiens
           YS-314]
 gi|259166182|gb|EEW50736.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 736

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 157/557 (28%), Positives = 270/557 (48%), Gaps = 25/557 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + +A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 112 LPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHDVVGLAQTGTGKTAAFALPVLSRID--- 168

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 169 ---KSVRSPQALVLAPTRELALQVADSFQSFADHLGGLNVLPIYGGQAYGIQLSGLRRGA 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P  +++ +F
Sbjct: 226 HIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMGFQEDVERILADTPDDKQVALF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  +   +++ SE R  ++I  R + VA  ++ +A+  IL     +
Sbjct: 286 SATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFLSVAHRNKMDALTRILEVTEFE 345

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 346 AMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 405

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + R  N 
Sbjct: 406 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNA 465

Query: 366 SVVWEPAPSVEAIRERDAQRI-------LQDP-------LFLDSIQGDEKKMVDVLLAKH 411
            +V    P+V+ + E    +        L++P       L  +  + ++  + DV  A  
Sbjct: 466 PLVEMELPTVDEVNEYRKVKFADSITEALENPQVALFRTLIKEYAEKNDVPLEDVAAALA 525

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
              +    F    +A                 DR                +    + + +
Sbjct: 526 TQAQAGNDFFLTEQAADRDRGRGDRRRDRDFDDRGGRGRDRGDRPSRFDRDDANLATYRI 585

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKL 527
           +VG +Q      ++  L    G+N +  G I +  D T VE+  D     +D LR T   
Sbjct: 586 AVGKRQHVRPGAIVGALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLRDTRIS 645

Query: 528 DKGIQLKYLGGEKPDFR 544
            + I ++   G +P  R
Sbjct: 646 GQLINIERDSGGRPPRR 662


>gi|163751207|ref|ZP_02158436.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
 gi|161329036|gb|EDQ00109.1| ATP-dependent RNA helicase DeaD [Shewanella benthica KT99]
          Length = 611

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 170/604 (28%), Positives = 275/604 (45%), Gaps = 43/604 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  +L E GY   T +Q A + P +  KD+L  AQTG+GKT AF L L S +    
Sbjct: 13  LSEPLLRSLDELGYEKPTPIQAASIIPLMAGKDILGQAQTGTGKTGAFALPLLSNIDPA- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 +AP  L +APTRELAVQV             +  +   GG S+H++   L+ G 
Sbjct: 72  -----INAPQILVLAPTRELAVQVAEAFATYAKFVKGLHVLPIYGGQSMHQQLNALRRGP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK+R++ +F
Sbjct: 127 QVIVGTPGRVMDHMRRGTLKLDSLKAMVLDEADEMLKMGFIDDIEWILEHTPKQRQLALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  Y  D + V IA+        + R V V+  ++  A+V +L     +
Sbjct: 187 SATMPEQIKRVANKYLTDPIHVKIAATTATVETTEQRFVQVSQHNKLEALVRVLEVEKTE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR S     + L    +    L G+++QQ R  A++ ++ G   + IATDVAA
Sbjct: 247 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKRGSLDILIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E  +HR GRTGRAGR GM++  +     R    + R    
Sbjct: 307 RGLDVERIRHVINYDIPYDTEAYIHRIGRTGRAGRTGMAILFVTHREMRMLRTIERATKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFL 421
            +     PS E++ ER   R+  Q    ++    D  K     L    + D + +AA  L
Sbjct: 367 RISPMDVPSPESVTERRLSRLGEQVAEIINKDSLDFMKGAVAQLCQQLEVDTDVLAAALL 426

Query: 422 RIHRAGL------CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------- 464
           +  +             +       + RDR    SR  +     RD+             
Sbjct: 427 QQVQKDRPLQLPAMNERQRDSRDDRNSRDRNDRGSRGERSERPRRDSRPTPSNLGTADSL 486

Query: 465 ------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----S 514
                     + + VG         ++  +   + I+ + IG I++   +T +++     
Sbjct: 487 KDNPDVKMCRYIIDVGRDNGVGVGNIVGAIANEANIDSRYIGQIQLFDQITSIDLPAGMP 546

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG-----YKSSGFKSKNSQDGATKRFKRFKG 569
           AD +  L +     + + ++   G +    G      +     S        ++  R  G
Sbjct: 547 ADVLQHLTKVRVCGRPLNIREAEGAELPSGGDSRPPRRPRRSSSDRRPSSGDRKPHRKGG 606

Query: 570 ASKN 573
           A K 
Sbjct: 607 APKE 610


>gi|89054065|ref|YP_509516.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863614|gb|ABD54491.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 706

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 275/535 (51%), Positives = 362/535 (67%), Gaps = 20/535 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q +  AL  +GY  LT VQ+A+ +PDL  KD+LVSAQTGSGKT+ FGLA+A  L  E + 
Sbjct: 3   QALQTALDAQGYDTLTPVQQAVTDPDLTGKDLLVSAQTGSGKTLGFGLAIAPQLFGEAEA 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F  A APLAL IAPTRELA+QV REL WL+A+ G  +A  +GG+ +  ERR L  GAHIV
Sbjct: 63  FGAAGAPLALVIAPTRELAMQVKRELSWLFAQAGATLASTVGGMDMRDERRALARGAHIV 122

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL DHI    +++S LKAVVLDEADEMLDLGFR+D+EFILD+SP  R+ LMFSAT
Sbjct: 123 VATPGRLKDHIMRGSIDLSSLKAVVLDEADEMLDLGFREDLEFILDTSPADRQTLMFSAT 182

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  LA+NYQKDAVRV   +  +QHSDI+YRA+ V+  D +NAI+N+LR++ A NAI
Sbjct: 183 VPAAIARLAQNYQKDAVRVATTTGEKQHSDIEYRALTVSARDGENAIINVLRFYEAPNAI 242

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC+TRA+V+R T  L+   F VVALSGEL+Q ER+NALQ MRDGRARVC+ATDVAARGI
Sbjct: 243 VFCNTRATVNRMTTRLSNRGFSVVALSGELTQSERTNALQAMRDGRARVCVATDVAARGI 302

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           DLP+LELVIHAEL +N + LLHRSGRTGRAGRKG+S  ++P   +++A+RL   A ++ V
Sbjct: 303 DLPNLELVIHAELPTNQDTLLHRSGRTGRAGRKGVSALIVPPAARKKAQRLLGWAKLTAV 362

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
           W  APS + +  RD  R+++D  +   +Q   ++ VD L+ K+  E++A+ F+R++R   
Sbjct: 363 WAEAPSADEVTARDDARMMEDADWDAEVQDSNREAVDKLVDKYSAEQLASAFVRMYREKR 422

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            APEE++  S      +                 F  S WFSL+ G    AE R L+PML
Sbjct: 423 SAPEELSDASAAPEPRK----------------AFGPSVWFSLAGGQAVGAEPRRLLPML 466

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT----VKLDKGIQLKYLGGE 539
           C+   I R  +GAIR+  + +F+E+    VD         ++++ G  L  L   
Sbjct: 467 CKMGNITRDDVGAIRIHHEASFIELRESAVDGFLAAVGGKMEMEDGAALTRLEAA 521


>gi|119357571|ref|YP_912215.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354920|gb|ABL65791.1| ATP-dependent RNA helicase CsdA [Chlorobium phaeobacteroides DSM
           266]
          Length = 589

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 155/580 (26%), Positives = 261/580 (45%), Gaps = 24/580 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL E GY N T +Q   +   L  +D+L  AQTG+GKT AF L + S +      
Sbjct: 18  EPLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKTAAFALPILSNITIAR-- 75

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHI 127
                 P AL +APTRELA+QV                +   GG     + R L+ G H+
Sbjct: 76  ----REPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGIQLRMLKQGVHV 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+ILD +PK R++ +FSA
Sbjct: 132 VVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQTPKGRQVALFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +A+ Y  +   + I ++      I  R  +V  S + + +  IL        
Sbjct: 192 TLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGGSHKLDVLTRILEVEPFDGI 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F  T+       + L    +   AL+G+++Q  R   ++ ++ G   + IATDVAARG
Sbjct: 252 LIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALNIVIATDVAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  VI+ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + +     +
Sbjct: 312 LDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNMLYAIEKATRKRI 371

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                PS E I  +   +  Q     D+I   E      L+ ++  E             
Sbjct: 372 ELMELPSTEIINNKRISKFKQR--ITDTIAAGELDFYSRLIEQYCHEHDVPELDAAAALA 429

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFK----------VGGGSRDNFKGSSWFSLSVGSKQ 477
                E TP+ L +  +R RD     +             G     +G   + + VGS  
Sbjct: 430 SLLQGE-TPLLLSAKPERTRDHDDRPRSQSDSGFAKKRKKGEMYGDEGRQRYRIEVGSTH 488

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQL 533
             +A  ++  +    G++ +++G I +    + VE+     +     LR+     + ++L
Sbjct: 489 GVKAGNILGAIINEIGLDPEAVGQISISDTYSSVELPEGMPEEVFHELRKVRVCGRQLRL 548

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + G+           F+     +   + F   +   + 
Sbjct: 549 TKIEGQDSASSYAPKKNFRKSAKPEKDQQAFFTGQKKKRR 588


>gi|258516257|ref|YP_003192479.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779962|gb|ACV63856.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 539

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/532 (29%), Positives = 258/532 (48%), Gaps = 26/532 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL   G+   T +Q+  +   L  KD++  AQTG+GKT AF + +   +    
Sbjct: 19  LNSRIVQALVNMGFEEPTPIQQKTIPISLEGKDIIGQAQTGTGKTAAFAIPVLEKID--- 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGA 125
              S  +   AL I PTRELA+QV  E+  +     +      GG S+ R+ +   Q   
Sbjct: 76  ---SRRNGVQALIITPTRELAIQVAEEISNIGKYCRIRALPIYGGQSIDRQIKALKQQRV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGRL DH+R   L +  +  VVLDEADEMLD+GF +DIE IL+ +P  R+  +F
Sbjct: 133 QIVIGTPGRLLDHLRRGTLRLEQVATVVLDEADEMLDMGFIEDIEAILNQTPTTRQTFLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  L++ Y      + ++  N     I+        S + +A+  +L      
Sbjct: 193 SATIPEEILRLSRKYLNSPEFITVSRNNLTVPLIEQVYYETRESTKLDALARLLDALDIS 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T+  V      L    +Q   L G+LSQ +R++ ++  + G+    +ATDVAA
Sbjct: 253 LAIIFCRTKRGVDELVASLQVRGYQAAGLHGDLSQYQRNHVMRQFKAGQVEFLVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ ++  VI+ ++  +PE  +HR GRTGRAG+ GM++ ++     R+   + +    
Sbjct: 313 RGLDIENVSHVINFDVPQDPEFYVHRIGRTGRAGKTGMAISLVSPRDFRQLRLIEKITKS 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            V  E  P +  + ER  + I    +    DS     + +VD L+ ++DP  IAA  L++
Sbjct: 373 RVKREHLPGLADLTERRKEMIKSQLIRVIEDSNLAYYRSVVDPLVDEYDPIDIAAAALKL 432

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                          L +G D  + +S       G+     G     +++G K       
Sbjct: 433 GY------------DLETGDDIEKTESSPAYYDTGAG---PGMVRLFMTLGRKDNISPGE 477

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQL 533
           L+ +L   +GI    +G +R+    TF EV  +  + +  ++     KG ++
Sbjct: 478 LVRVLSEETGIPEHMVGDVRIYEKFTFTEVPEEWANCVIGSLNKQSIKGRRI 529


>gi|304383161|ref|ZP_07365635.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
 gi|304335738|gb|EFM01994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella marshii
           DSM 16973]
          Length = 608

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/589 (28%), Positives = 268/589 (45%), Gaps = 26/589 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ +   VQE ++   L    DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSEEIRHAIEELGFEHPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  E      +    AL ++PTREL +Q+  +L         +  V   GG S+  
Sbjct: 61  LIQKIDTE------SKTTQALVLSPTRELCLQIADDLTAFSKYINGLHVVPVYGGASIET 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D +      + ++  VVLDEADEML++GF D I  I +  
Sbjct: 115 QIRSLRHGVQIIVATPGRLIDLMHRGVAKLENVSNVVLDEADEMLNMGFSDSINEIFEGI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  I  +A+NY  D   + + S N    ++++   +V   D+  A+ 
Sbjct: 175 PADRNTLLFSATMSREIEKIARNYLHDHKEIVVGSRNEGAENVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC T+         L    +    L G+LSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPHIFAIIFCRTKRETQEVADKLIHDGYNAEPLHGDLSQPQRDLTMQKFRQHMTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDVESYTHRSGRTGRAGKKGTSIAIIHTRERSKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + +           P+ + I  +   +++ + L  D ++ +       +D      D 
Sbjct: 355 RAIEKIIGKKFDEGTIPTAKEICSKQLYKVMDEILKTDVLEEEIAPFMTEIDRHFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR---DDSRAFKVGGGSRDNFKGSSWFS 470
           E I    + +      A     PV       + R      R  K G  S    +G +   
Sbjct: 415 EDIIKKIVSMEFGKFLAYYADAPVIERPTTQKERLSERKERQRKGGNRSYKAEEGFTRLF 474

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +++G         +M  + R     RQ +G I +    +++EV ++  D + + +    G
Sbjct: 475 INLGKADGFYPGEVMQFINRHVH-GRQEVGHIDLLSKYSYIEVPSEDADRVMKAL---NG 530

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKN------SQDGATKRFKRFKGASKN 573
           +Q K       D     + G +  +      S+   T+R K   G  + 
Sbjct: 531 VQYKRRTVRCNDADRGGNKGDRHSHQLPEDKSRKPKTRRAKGETGDWRQ 579


>gi|78486348|ref|YP_392273.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364634|gb|ABB42599.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 574

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 143/541 (26%), Positives = 256/541 (47%), Gaps = 29/541 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L E GY   + +QE  +   L+  D+L  AQTG+GKT AF L + S +  + 
Sbjct: 12  LSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQTGTGKTAAFALPILSKIDLKQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    +        +  +   GG     + R L+ G 
Sbjct: 72  KD------PQVLVLAPTRELAIQVAEAFQTFSRGVKGLHVLPIYGGSEYGTQIRALKRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI+   L +  LK ++LDEADEML +GF DD+E+IL  +P  R++ +F
Sbjct: 126 HVVVGTPGRVMDHIKKGTLKLDTLKVMILDEADEMLRMGFIDDVEWILKHTPDTRQIALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A  Y +D   V I  +    S I+ +  LV+   + +A+  IL      
Sbjct: 186 SATMPKEVHRIANTYLQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFD 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + L    +   AL+G+++Q +R   +  ++ G+  + IATDV A
Sbjct: 246 GIIIFVRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIATDVVA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +R    +      
Sbjct: 306 RGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAPRERRLLRSIEASTKK 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     P+ + I +    R       +D+ QG +      ++   + +      +IAAG
Sbjct: 366 KITQMELPTAQEINDSRITRFKDK--IVDAAQGTDLDFYQKMVESIESDNNIPAIEIAAG 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR--------------DNFKG 465
             ++ +  +    +  PV     ++R     R  +   G R                 +G
Sbjct: 424 LAKLLQGDVPFFLDEKPVKHKEFKERDGGRERNPRRAKGERSERGDRGNRSRRQTPPNEG 483

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            + F + VG +   +   ++  +   +G++ + I  + ++ + + V++ +D    +   +
Sbjct: 484 MARFRVEVGRQHGVKPGNIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSDMPKNVFNEL 543

Query: 526 K 526
           K
Sbjct: 544 K 544


>gi|114569451|ref|YP_756131.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114339913|gb|ABI65193.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 787

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 264/572 (46%), Positives = 367/572 (64%), Gaps = 16/572 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +   I   +  AL ++GY  LT VQ A++  +   +D+LVSAQTGSGKT AFG+A+A 
Sbjct: 1   MTLNPRIAPALAAALEKKGYAALTEVQSAVIAEEAEGRDLLVSAQTGSGKTAAFGMAMAK 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL ++D+F+    P+AL +APTRELA+QV REL WLY +    +A C+GG+    ER+ 
Sbjct: 61  TLLGDDDQFNRPDLPMALIVAPTRELALQVQRELAWLYGEARGQIASCVGGMDPRAERKA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIVVGTPGRL DHI    L++S LKAVVLDEADEMLD GFR+D+E+ILD++P  R
Sbjct: 121 LERGCHIVVGTPGRLRDHIERGALDMSQLKAVVLDEADEMLDFGFREDLEYILDAAPASR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+  AI  +A+ +QKDA+R++  SE  QH+DI+YRA+ VA SDR+NAI+N+LR
Sbjct: 181 RTLLFSATVPRAIADIARRFQKDALRISTVSERGQHADIEYRALSVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A+ AI+FC+TR +V+R         F  VALSGEL+Q+ER++ALQ +RDGRARVC+A
Sbjct: 241 YYDAERAIIFCATREAVNRLAARFGNRGFAAVALSGELTQKERTHALQALRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP LELVIHA+L +N + LLHRSGRTGRAG KG+   ++P   + RA RL 
Sbjct: 301 TDVAARGIDLPGLELVIHADLPTNSDVLLHRSGRTGRAGAKGVCAIIVPHTRRGRANRLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R+A +   W  APS + +R RD +R++ DP+  +++    K   D LL K   E++AA F
Sbjct: 361 RDAKLQAEWAEAPSSDDVRARDRERLMADPILTEAVDEAMKVDTDALLEKFTAEQLAAAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           LR   A L + E++      +  DR     R          NFK S WF LS G K KAE
Sbjct: 421 LRARLATLPSAEDLL-SGPAAQNDRPERKPRE---------NFKASVWFRLSAGRKAKAE 470

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG----IQLKYL 536
            RWL+P++CR   + ++ IG+I++    T  E+ A+  D   + +  + G    I++   
Sbjct: 471 PRWLLPLICRLGHVTKREIGSIQIGETETRFEIDAEHADRFAKALAENGGGENNIRVSPD 530

Query: 537 GGEKPDFRGYKSSGFKSKNS--QDGATKRFKR 566
            G + +  G       ++    +     R + 
Sbjct: 531 DGSQMERAGPNDGPTDARTPKMRHREKSRHRE 562


>gi|68536452|ref|YP_251157.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264051|emb|CAI37539.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 713

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 162/584 (27%), Positives = 277/584 (47%), Gaps = 51/584 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 81  LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P  +++ +F
Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  D   + + +  R   +I+   +LV+  D+ +A+  IL     +
Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVAA
Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAGRKG ++  +    +R  + + R    
Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKS 434

Query: 366 SVVWEPAPSVEAIRERDAQRI-------LQDP-------LFLDSIQGDEKKMVDVLLAKH 411
            +     P+V+A+ E   ++        L DP       L  +  + +E ++ D+  A  
Sbjct: 435 RLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAALA 494

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------- 461
              +    FL          +E         RDR+ DD+R+        D          
Sbjct: 495 AQLQAGEDFLM---------KEKPKEERPRRRDRYGDDNRSGGGAYKPFDERFNKEAPRI 545

Query: 462 ---NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-- 516
              N K  + + LSVG +Q+     ++  L    G++ +  G I +  + + VE+ AD  
Sbjct: 546 TDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVELPADLP 605

Query: 517 --GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
                 L +T    + I ++      P     +    K ++  D
Sbjct: 606 MEVFHALDQTRVSGQLINIEPD----PGAPEGRPGSHKRQHRND 645


>gi|45358020|ref|NP_987577.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           maripaludis S2]
 gi|44920777|emb|CAF30013.1| Probable ATP dependent RNA helicase [Methanococcus maripaludis S2]
          Length = 538

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 163/536 (30%), Positives = 276/536 (51%), Gaps = 18/536 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ F+N+     I EAL ++G+ N T +QE  +   +   +D++  AQTG+GKT AFG+ 
Sbjct: 1   MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+         +    AL +APTRELA+QV  E++ +     + V    GG S+ R+
Sbjct: 61  ILETIDEH------SRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S  
Sbjct: 115 IRELRRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVS 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +RML+FSAT+  +I  LAKNY ++   + +  +    +  D     +   D+   +  
Sbjct: 175 TDKRMLLFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        ++FC T+A V      L E  +    L G+++Q +R   L   +  +  V
Sbjct: 235 IIDTEKEFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  V++ ++  NPE+ +HR GRTGRAG++G ++  +  +  R+ +
Sbjct: 295 LVATDVAARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354

Query: 358 RLFREANVSVVWEPAPSV-EAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPEK 415
            + + A   +  E  P V + I  +  + I      L+S +  D +KM   LL   DP++
Sbjct: 355 YIQKIAKTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           + +  L+       +      +   S R     R+DSR  +      +         +++
Sbjct: 415 VLSAVLKYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGEN-----VRLFVAL 469

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           G   K   + L+  + R S +  + I  ++V    +FV VS+   +++  + K ++
Sbjct: 470 GKLDKMNPKKLVDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNER 525


>gi|78213173|ref|YP_381952.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
 gi|78197632|gb|ABB35397.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9605]
          Length = 607

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 156/547 (28%), Positives = 267/547 (48%), Gaps = 25/547 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 64  FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE--- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S    P AL +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 121 ---SGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ S L+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G++
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGSE 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 298 GVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R    
Sbjct: 358 RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQ 417

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA------KHDPEKI 416
            +     P   AI +    R+   L D         DE  ++  L+       +  PE++
Sbjct: 418 PIEAMEVPGNTAINQGRLDRLRKRLSDAAQSQRPDADEAALLQELMQRVATELELSPEQL 477

Query: 417 AAGFLRIHRA-----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           A   L +             + I                R  +    +R   +    + +
Sbjct: 478 AMAALNLAIGPDALLRKGDDDWIQNTRRNDRDRDRHSGDRRERRERPARAPEENMQRYRV 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527
            VG + + +   L+  +   +G+  + IG I++  + + V++      D  + L+R   +
Sbjct: 538 EVGHRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSLVDLPKGMPEDVFNSLQRLRVM 597

Query: 528 DKGIQLK 534
           ++ +Q+ 
Sbjct: 598 NRELQIS 604


>gi|330999043|ref|ZP_08322768.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
 gi|329575785|gb|EGG57311.1| cold-shock DEAD-box protein A [Parasutterella excrementihominis YIT
           11859]
          Length = 586

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 165/584 (28%), Positives = 264/584 (45%), Gaps = 29/584 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  +LS  G+   T +Q   +   L  +DVL  A TG+GKT AF L L      + 
Sbjct: 11  LSEKLVNSLSSLGFEEPTPIQTKAIPVLLEGRDVLGQAATGTGKTAAFSLPLIQRYCLDT 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P  L + PTREL +QV   +      +GV V    GG    R+ + L  G  
Sbjct: 71  EPGK----PQVLILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQ 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR  DHIR   LN++ +KAVVLDEADEMLD+GF +D+E I  + P+KR+  +FS
Sbjct: 127 IVVATPGRALDHIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P I  +A+N+  DA  + I  E         +   A +V  + +  A+  IL    
Sbjct: 187 ATLPPKIAKIAENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIES 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF  TR  V    + L    + V  L G L Q +R   ++  R  +  V +ATDV
Sbjct: 247 PRLAIVFARTRNEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  VI+  + S+ E  +HR GRTGRAGR+G ++ ++     R  + + R  
Sbjct: 307 AARGIDIDHLTHVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLKNIERLT 366

Query: 364 NVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +     P+   +  +     +  + + L  +S  G  + +V+ L  + D   +AA  
Sbjct: 367 KRKITLLSVPTATDVHAKRLDLTRSSIHEILVNESDLGKYRSVVENLADEFDILDVAAAA 426

Query: 421 LRIHRAG-------LCAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           ++            +  P++++   +    R    +     +   G R+  +G     + 
Sbjct: 427 VKFANEANWKDVSEIELPDDLSWKKAPREDRRDRGERGERTRKERGPRELSQGMVRLFIG 486

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLD 528
            G       + L+  +   +GI  + IG+I +    + VEV  +        LR      
Sbjct: 487 AGRDAGVRPQDLVGAIANEAGIPSKLIGSIDIADRFSLVEVDENVAQDVIYALRDAFIKG 546

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           +   ++Y        R      + SK     + K  ++ KG  K
Sbjct: 547 RQCVVRYD-------REGSPKSYPSKKEGKDSEKPSRKGKGNKK 583


>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 529

 Score =  298 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 158/551 (28%), Positives = 261/551 (47%), Gaps = 33/551 (5%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE++   + I +AL E G+   T +Q   +      KD++  AQTG+GKT AFG+
Sbjct: 1   MKSMHFEDLDIKKDILKALKELGFEVPTPIQVQAIPHLKMGKDIIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVH 115
            +   +  +N       A   L +APTREL+VQV  E++       GV      GG  + 
Sbjct: 61  PMIERVNPKN------KAVQILIMAPTRELSVQVADEIQKFSNHVIGVKTLAIYGGQPIS 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+VGTPGR+ DHI  K L +  +  VVLDEAD+MLD+GF++D+E IL  
Sbjct: 115 TQIKALKRGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQMLDMGFQEDMEAILKE 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P +R+  MFSATIS  I  +A+ Y K   ++ +A +      I      V   ++  A+
Sbjct: 175 TPTERQTAMFSATISREIERIAQKYMKQPEKIMVAQKALTVPQISQYYFEVKPHEKVEAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL        I+FC T+ SV   T+ L    +   A+ G+L Q +R   ++  R+   
Sbjct: 235 CRILDMDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTI 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ D+E+V++ ++  + E  +HR GRTGRAG++G++  +      R 
Sbjct: 295 DLLVATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGVAYTLATGKQMRT 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDP 413
            + L       +V    P+V  + E+    I      +    G  +    V+ L   H+ 
Sbjct: 355 LKALESYIKGKIVRRKIPTVNDVVEKQKDSIADQIHAVIEKGGLTEYTNFVEKLSDDHNS 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA   ++         E +   L    +   D  + +K                +++
Sbjct: 415 MDIAAALFKMLT-------EKSDTELFKVAENISDTEKEYKA---------DMVRLFINI 458

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLDK 529
           G     + + ++  +   +GI+   +G I +    TFVEV        +D + +     K
Sbjct: 459 GKSHGVKPKDILGAVAGEAGISGDVVGIIDMYDKFTFVEVPGQFEEQVLDAMDKNRIKGK 518

Query: 530 GIQLKYLGGEK 540
            I ++    ++
Sbjct: 519 KINMERANDKR 529


>gi|188575689|ref|YP_001912618.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520141|gb|ACD58086.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 614

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 169/620 (27%), Positives = 279/620 (45%), Gaps = 67/620 (10%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S       +   
Sbjct: 1   MRAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSNADLNQVK--- 57

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              P AL +APTRELA+QV    +    A  G  V    GG    ++   L+ G H+VVG
Sbjct: 58  ---PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVHVVVG 114

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P+KR++ +FSAT+ 
Sbjct: 115 TPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFSATMP 174

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL        I+F
Sbjct: 175 PAIRRIAQTYLKDPAEVIIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDGMIIF 234

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+A      + L        A++G++ Q  R   +  ++DG+  + +ATDVAARG+D+
Sbjct: 235 ARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAARGLDV 294

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     + R     +   
Sbjct: 295 ERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTLREKGMLRSIERATRQPIEEM 354

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAGFLRIH 424
             PSV+A+ +    R +      +++ G +  M   LL +++ E       IAA   ++ 
Sbjct: 355 QLPSVDAVNDTRVARFM--TRITETLAGGQIDMYRDLLQRYEAENNVPAIDIAAAMAKLL 412

Query: 425 RAGLC---------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------- 464
           +             A E+  P       DR        K   G R + +           
Sbjct: 413 QGDAPFLLTPPVRGAREDAAPRERHQRADRGDRPRFEPKFERGPRADGERAPRPPRGDDA 472

Query: 465 ------------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
                             G   + + VG     +   ++  +   +G+  + IG I +Q 
Sbjct: 473 GGERPRRDPVAPRGEPELGMESYRIEVGHSHGVKPANIVGAIANEAGLESRYIGRIDIQD 532

Query: 507 DLTFVEVSADG----VDLLRRTVKLDKGIQLKYLGG-------EKPDF-RGYKSSGF--K 552
           D + +++ AD     +  L++     + + ++ L          KP F RG K SG    
Sbjct: 533 DYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPAKPRFPRGGKPSGRSNG 592

Query: 553 SKNSQDGATKRFKRFKGASK 572
                D A    ++     +
Sbjct: 593 PVRPMDRAGAPHRKGPPKPR 612


>gi|300858229|ref|YP_003783212.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685683|gb|ADK28605.1| hypothetical protein cpfrc_00811 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302330505|gb|ADL20699.1| DEAD-box helicase [Corynebacterium pseudotuberculosis 1002]
 gi|308276186|gb|ADO26085.1| DEAD-box helicase [Corynebacterium pseudotuberculosis I19]
          Length = 660

 Score =  298 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 163/561 (29%), Positives = 274/561 (48%), Gaps = 33/561 (5%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +P  I +A+++ G+   + +Q   +   +   DV+  AQTG+GKT AF L + S 
Sbjct: 68  FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMEGHDVMGLAQTGTGKTAAFALPILSR 127

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +         P AL +APTRELA+QV    +      G +  +   GG +   +   
Sbjct: 128 INVKK------RHPQALILAPTRELALQVADSFQSFADHLGDIHVLPIYGGQAYGIQLSG 181

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+VGTPGR+ DH+    L+IS+L  +VLDEADEML +GF++DIE IL+ +P  +
Sbjct: 182 LRRGAQIIVGTPGRVIDHLEKGSLDISNLNYLVLDEADEMLSMGFQEDIERILEDTPADK 241

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+   I  L+K Y KD   + + SE R +++I  R + VA  ++ +A+  IL 
Sbjct: 242 QVALFSATMPNGIRRLSKQYMKDPREIQVKSETRTNTNITQRFLNVAHRNKLDALTRILE 301

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +A
Sbjct: 302 VTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVA 361

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + 
Sbjct: 362 TDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAILFVTPRERRMLRSIE 421

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--E 414
           R  N  ++    P+V+ + E   ++        +S++  +    + ++     +HD   E
Sbjct: 422 RATNAELIEMDLPTVDEVNESRKEKFADS--ITESLEDSQVAIFRNLIKAYAEEHDTPLE 479

Query: 415 KIAAGFLRIHRAGLCAPEEITPVS------------LVSGRDRFRDDSRAFKVGGGSRDN 462
            IAA      RAG     +  P                 G  R R D R     G   + 
Sbjct: 480 DIAAALATQARAGSEFLMKEPPPEKRRERRDRFDRDDRRGDRRDRGDRRDRGDRGSRFER 539

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGV 518
               + + L+VG +Q      ++  L    G++ +  G I +  D T VE+         
Sbjct: 540 SGDMAVYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIAVDHTLVELPKGLPQSVF 599

Query: 519 DLLRRTVKLDKGIQLKYLGGE 539
           D LR T    + I ++   G 
Sbjct: 600 DNLRDTRISGQLINIEKDNGR 620


>gi|221640975|ref|YP_002527237.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|221161756|gb|ACM02736.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
          Length = 777

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 269/552 (48%), Positives = 368/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDL-SDEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +             F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPSQRAPRER----------GEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPILERPERAPRKPFAERA 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRARDEAPRREK 557


>gi|154504732|ref|ZP_02041470.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
 gi|153794906|gb|EDN77326.1| hypothetical protein RUMGNA_02239 [Ruminococcus gnavus ATCC 29149]
          Length = 550

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 146/526 (27%), Positives = 249/526 (47%), Gaps = 30/526 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +A+   G+   + +Q   +   +  KDV+  AQTG+GKT AFG+ L   +  +N +
Sbjct: 36  PEILKAVKHMGFEEASPIQSKAIPVIMSGKDVIGQAQTGTGKTAAFGIPLLEKIDPKNKK 95

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHI 127
                   A+ + PTRELA+QV  E+  L      +  +   GG  + ++ R L++G  +
Sbjct: 96  ------LQAIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIVKQIRSLKSGTQL 149

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V+GTPGR+ DH+R K + + H+  +VLDEADEML++GFR+DIE IL+  P++ + ++FSA
Sbjct: 150 VIGTPGRVMDHMRRKTMKMDHVHTIVLDEADEMLNMGFREDIETILEGIPQEHQTVLFSA 209

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+  AI  + K +Q +A  V +  +     +I+     V   +++  +  +L  +  K +
Sbjct: 210 TMPKAILEITKQFQTNAELVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLDIYTPKLS 269

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC+T+  V      L    +    L G++ Q +R   +Q  R G+  + + TDVAARG
Sbjct: 270 VVFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKTDILVCTDVAARG 329

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+E V + +L  + E  +HR GRTGRAGR G S   +      + + + R     +
Sbjct: 330 IDVDDVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGREVYKLKEIQRYCKTKI 389

Query: 368 VWEPAPSVEAIRERDAQRIL----QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +  PS+  +     + +L    Q     D  +  +     V  + +    +AA FL+ 
Sbjct: 390 YAQKVPSLNDVANTKMENVLEEIEQIIENEDLTKFLQIIEERVNESDYTAMDLAAAFLKY 449

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                   E+          +                    G     +++G K KA+   
Sbjct: 450 CSGQQETEEKDMEFGDTGAEE-------------------AGMVRLFINIGKKNKAKPGD 490

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           ++  +   SGI  + IG I +    TFVEV  +    +   +   K
Sbjct: 491 IVGAIAGESGIPGKLIGTIDMFDKYTFVEVPREYARDVLNAMNHTK 536


>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 564

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 165/581 (28%), Positives = 276/581 (47%), Gaps = 46/581 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+   T +Q   +   L   D++  AQTG+GKT AFG+     + +  
Sbjct: 11  LSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEKIDSHI 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
           D          L + PTRELA+Q   EL  +     G+ +    GG  + R+   L+   
Sbjct: 71  DSI------QVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKRP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DH+R K L +  LK +VLDEADEML++GFR+DI+ IL+  P+ R+ ++F
Sbjct: 125 QIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTILF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K YQKD V + IA +      I+   + V  S +   +  ++  +  K
Sbjct: 185 SATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VFC+T+  V   T  L    F   AL G++ Q+ R   + + R G   + IATDVAA
Sbjct: 245 LSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + +L ++ E  +HR GRTGRAGR G +   I      +   + R    
Sbjct: 305 RGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDIQRYTKS 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-----------------PLFLDSIQGDEKKMVDVLL 408
           ++V    PS+  + E+    IL+                    F+D+I  + ++  +  +
Sbjct: 365 TIVAMKPPSLNEVEEKKMLNILKTLKDNLKDDSISKFVSHIERFIDTINNESEEQGENFV 424

Query: 409 AKHDPEKIAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              D   +AA  L+++       P E+  +                        + K   
Sbjct: 425 TSLD---VAAALLKMYGEQSGNLPNEVNEID-----------------NAVEPGSNKDMV 464

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++GS+ K + + ++  L  S+G+  + +GAI +    +FVEV  D    + +++K 
Sbjct: 465 RLFINIGSESKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKDIAPEVLKSMK- 523

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
           +  I+ K +  EK + R     G     S     +  K+ K
Sbjct: 524 NYTIKGKRINIEKSNARKKSGRGSSFNRSTPPNRRSPKKSK 564


>gi|172040364|ref|YP_001800078.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
 gi|171851668|emb|CAQ04644.1| ATP-dependent RNA helicase [Corynebacterium urealyticum DSM 7109]
          Length = 778

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 162/564 (28%), Positives = 274/564 (48%), Gaps = 32/564 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   G+   + +QE  +   +  +DV+  AQTG+GKT AF L + S L  ++
Sbjct: 138 LSPEVFDAVRAVGFTKPSPIQEQTIPLLMAGEDVVGLAQTGTGKTAAFALPILSRLNLKS 197

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    E    K G V  +   GG     +   L+ GA
Sbjct: 198 RK------PQALVLAPTRELALQVAESFEDFAEKMGGVNILPIYGGQPYGAQLSGLRRGA 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH++   L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 252 HVVVGTPGRVIDHLQKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 311

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+K Y      V + S  R   +I+   ++V   ++ +A+  IL      
Sbjct: 312 SATMPSAIRHLSKRYLNSPQEVTVKSTQRTAENIEQDYLIVHHREKLDALTRILEVTDFD 371

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    ++  A++G+++Q +R   +  ++DGR  + +ATDVAA
Sbjct: 372 AMIMFVRTKNDTEELAERLRARGYEAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAA 431

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAGR G +V  +    +R  + + R    
Sbjct: 432 RGLDVERITHVFNYDIPRDTESYVHRIGRTGRAGRSGRAVLFVTPRERRMLKSIERATKS 491

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLF-LDSIQGDEKKMVDVLLAK---HDPEKIAAGFL 421
            +     PSV+ + E    +  ++    L+  Q    + +    A+      E IAA   
Sbjct: 492 RLNEIELPSVDQVNEARKAKFNRELTKNLEDPQVSVFRDLVTTYAEANGVTLEDIAAALA 551

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------------G 465
              + G     E  P      R   R    A + GGG+  +F+                 
Sbjct: 552 AGAQGGEKFLMEEAPRREHKRRSDDRYGD-ADRRGGGAYRSFEERFNKPAPRFTDRNGNE 610

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLL 521
              + LSVG +Q+     ++  L    G+N +  G I +  + + VE+ AD      + L
Sbjct: 611 MEVYRLSVGHRQRVRPGAIVGALANEGGLNSRDFGRISIFSEHSLVELPADLPKQVFEAL 670

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRG 545
            +T    + I ++   G      G
Sbjct: 671 DQTRVSGQLINIEPDPGAPKGRPG 694


>gi|330829254|ref|YP_004392206.1| DEAD/DEAH box helicase domain-containing protein [Aeromonas veronii
           B565]
 gi|328804390|gb|AEB49589.1| DEAD/DEAH box helicase domain protein [Aeromonas veronii B565]
          Length = 633

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 164/640 (25%), Positives = 282/640 (44%), Gaps = 75/640 (11%)

Query: 1   MKIFENIP--------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           M   E +P          + +AL + GY   + +Q A +   +   D+L  AQTG+GKT 
Sbjct: 1   MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA 60

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGG 111
           AF L L S L A N           L +APTRELA+QV    +           +   GG
Sbjct: 61  AFALPLLSRLEAGNRN------TQILVLAPTRELALQVAEACQRYAHHMPDFHVLPIYGG 114

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S   + R L+ GA +VVGTPGR+ D IR K L++S LKA+VLDEADEML +GF DD+++
Sbjct: 115 ASYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDW 174

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I++  P  R++ +FSAT+   I  +A+ + K    + IAS+    + I  R   V    +
Sbjct: 175 IMEQCPSTRQVALFSATMPEQIRRVAQKHLKQPKEIKIASKTATATTIRQRYWQVTGLHK 234

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  +L     +  +VF  T+ +       LA       AL G++ Q+ R   +  +R
Sbjct: 235 LDAMTRLLEVESYEALLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLR 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + IATDV ARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +   
Sbjct: 295 QGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R    +      ++     PS E I +    +  +     +++ G+E ++   L+ + 
Sbjct: 355 ERRMLRAIEHATRQAIEPMKMPSTEDINQHRLAKFKER--IRETMMGEELEIYHNLVNEL 412

Query: 412 DPEKIA--------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
             E  A           L      L   + I    L +G DR   + R F   GG     
Sbjct: 413 IEEDSADPLELAAALAKLVQGDQPLLLDDSIPDPLLNAGNDRGGFERRDFNDRGGRDFGD 472

Query: 464 KG----------------------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGA 501
           +G                         + + VG+    +   ++  +   + I  + IG 
Sbjct: 473 RGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGN 532

Query: 502 IRVQPDLTFVEVS----ADGVDLLRRTVKLDKGIQL--------------------KYLG 537
           I +  D + V++     AD ++++++     + +Q+                    +   
Sbjct: 533 IDIADDFSTVDLPKGMTADVLEVIKKARVCQRPLQITRYTEVPAGGNTSSRPPRGDRPFR 592

Query: 538 GEKPDFRGYKSSGFKS----KNSQDGATKRFKRFKGASKN 573
           G++P  +  +  G +        ++G   + ++F G  + 
Sbjct: 593 GDRPFNKDRRPQGDRPFNKSGERREGGFNKDRKFGGKRRE 632


>gi|332559951|ref|ZP_08414273.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides WS8N]
 gi|332277663|gb|EGJ22978.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides WS8N]
          Length = 777

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 269/552 (48%), Positives = 368/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDL-SDEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +             F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 436 APPEPSQRAPRER----------GEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 485

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 486 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 545

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 546 PRARDEAPRREK 557


>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
 gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
          Length = 579

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 145/552 (26%), Positives = 253/552 (45%), Gaps = 40/552 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +SE GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 17  NLPEALLKVVSEMGYETPSPIQAQCIPHLLNGKDVLGLAQTGTGKTAAFALPLLANIDLS 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
                   AP  L +APTRELA+QV    +       G  V    GG S + +   L+ G
Sbjct: 77  ------LKAPQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRRG 130

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH++ K L++S+L  +VLDEADEML +GF DD+E I+   P K +  +
Sbjct: 131 PQVVVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTAL 190

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K Y  D + V I ++     +I+ +  +V   ++ +A+  +L     
Sbjct: 191 FSATMPDQIKRITKRYMNDPIEVKIKAKTSTVENIEQKCWIVRGVNKLDALTRMLETEEF 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +     + L    ++  AL+G+++QQ R   +  ++ G   + +ATDVA
Sbjct: 251 DGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQTRERTIARLKSGGLDILVATDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LV++ ++ ++ E+ +HR GRTGRAGRKG ++       +R  + + R   
Sbjct: 311 ARGLDVERISLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAIERATR 370

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKH---DPEKIAAGF 420
             +     P+ + + +   +   +      +S      + +   + K+   D   + +  
Sbjct: 371 QEITIMELPTRDEVTQTRIENFQKQVFDICESEDLTFFRNLYAQMEKNTELDELDLVSAL 430

Query: 421 LRIHR--AGLCAPEEITPVSLVSGR--------------------DRFRDDSRAFKVGGG 458
           L + +    L   EE         R                    DR     R  +   G
Sbjct: 431 LLMAQKEKPLQPVEEKFVEPRTHERSFDRESRGRGRDRGDRNSRGDRNDRGPRGERSERG 490

Query: 459 SRDNFKGS-------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                            + L VG     + + ++  +   + IN + IG I++  + + +
Sbjct: 491 GDKPRGRGRPTDVELETYRLDVGRSHGVQVKNIVGAIANEADINSRFIGDIKLNDEYSTI 550

Query: 512 EVSADGVDLLRR 523
           E+     +   +
Sbjct: 551 ELPKGMPEATLK 562


>gi|126460913|ref|YP_001042027.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126102577|gb|ABN75255.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 793

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 269/552 (48%), Positives = 368/552 (66%), Gaps = 15/552 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 33  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 92

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 93  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 152

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 153 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 212

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 213 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 272

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 273 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 332

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 333 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 392

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 393 VQERDDARLLEHPVLGQDL-SDEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 451

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           +      R   +             F  + W++++VG   +AEARWL+P +C + G+ + 
Sbjct: 452 APPEPSQRAPRER----------GEFGEAVWYAVAVGHTGRAEARWLLPKICEAGGVTKN 501

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG----EKPDFRGYKSSGFKS 553
            IGAIRVQ + TFV+++          ++++ G+ +  L G    E+P+    K    ++
Sbjct: 502 EIGAIRVQQEQTFVQIAKAAAGKFGAALEIEAGVGMVRLDGEPMLERPERAPRKPFAERA 561

Query: 554 KNSQDGATKRFK 565
             ++D A +R K
Sbjct: 562 PRARDEAPRREK 573


>gi|21673432|ref|NP_661497.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646533|gb|AAM71839.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 657

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 162/600 (27%), Positives = 268/600 (44%), Gaps = 40/600 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL   GY N T +Q + +   L  +DVL  AQTG+GKT AF L + S +   
Sbjct: 33  ELAEPLLRALEAVGYENPTPIQASTIPLLLEGRDVLGQAQTGTGKTAAFALPVLSNIDLS 92

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                 A+ P AL +APTRELA+QV                +   GG     + R+L+ G
Sbjct: 93  ------ATDPQALVLAPTRELAIQVAEAFHTYAEFMPGFHVLPIYGGQDYGVQIRNLKRG 146

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+R   LN+ +LK +VLDEADEML +GF DD+E+ILD +P+ R++ +
Sbjct: 147 VHVVVGTPGRVMDHMRKGTLNLDNLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVAL 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ Y K    + I ++      I  R  +V    + +A+  IL     
Sbjct: 207 FSATMPQPIVRIARKYLKAPAEITIQTKTTTVETIRQRYWMVGGHHKLDALTRILEVEPF 266

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+       + L    +   AL+G++ Q  R   ++ ++DG   + IATDVA
Sbjct: 267 DGIIIFVRTKTETVALAEKLQARGYAAAALNGDMVQSARERTIEQLKDGTLNIVIATDVA 326

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++ ++ E+ +HR GRTGRAGR G ++  +    +     + R   
Sbjct: 327 ARGLDVERISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFAIERATR 386

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLAKHDP------- 413
             +     PS E + ++   +  Q     D++  ++ +           +HD        
Sbjct: 387 KRIELMELPSTEIVNDKRIAKFKQR--ITDTVGAEDLEFYIGLIGQYCQEHDVSELEAAA 444

Query: 414 ---------EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----GSR 460
                    E             +   E         GRD FRDD R  +       G  
Sbjct: 445 ALAKLLQGDEPFLLSAKPERERPVRREEREPRYDREHGRDSFRDDFRKEREPRRQSKGGL 504

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
            + +    + L VG     +   +   +    G++ +++G I +    + VE+ A    D
Sbjct: 505 YSDEKRETYRLEVGKVHDVKPGNIAGAIINEIGLDPEAVGKIVINDQYSTVELPAGMPND 564

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF---KSKNSQDGATKRFKRFKGASKN 573
               L++     + +++  +   +  +      GF   +S N   G  +   R  G  K 
Sbjct: 565 VFQELKKVRVCGRQLRVSKMDEHQGGYGDRHDRGFGGDRSGNRSFGKDRSGDRGFGGDKK 624


>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 590

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 164/587 (27%), Positives = 264/587 (44%), Gaps = 60/587 (10%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + FE +   + I +AL E G+   + +Q   +   L+  DV+  AQTG+GKT AFG+ +
Sbjct: 6   FQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPV 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117
              +       + ++A  AL + PTRELAVQV  EL        GV +    GG S+ R+
Sbjct: 66  LERID------TSSNAVQALILCPTRELAVQVSEELGRLSKFMRGVRIEAIYGGDSIDRQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G HIVVGTPGR+ DH+  + L    ++ +VLDEADEMLD+GFR+DIE IL   P
Sbjct: 120 IRSLKKGVHIVVGTPGRVMDHMERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ ++FSAT+S  I ++ K +  D   + +      + +I+     V    +   +  
Sbjct: 180 EDRQTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  H  K+ +VFC+T+  V    + L    +    + G+L QQ+RSN +   + G   +
Sbjct: 240 LIDMHHIKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  L+ VI+ ++  + E  +HR GRTGRAG  G +  ++ ++ + R +
Sbjct: 300 LVATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLK 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----DP 413
            +     V +     PS E I      R +++         DE+   DVL   H      
Sbjct: 360 SIESYTKVKIEKGVIPSFEDIVGVRKARFVENISNSIKESNDEELYNDVLEMLHHSGFST 419

Query: 414 EKIAAGFLRIHRA--------------------------------------GLCAPEEIT 435
           E+I     +                                               E  +
Sbjct: 420 EQIVGAMAKQIMGVQKNEYSDSNLAWEERRSERREGGNDRFGRGERREGGRFGDRREGGS 479

Query: 436 PVSLVSGRDRF-----RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
                 G DR+     R D    +          G +   LS+G K     + ++  +  
Sbjct: 480 RFGSDRGGDRYAPRGERGDRGGDRGERRQSAPEAGMTRLFLSLGRKDHIMPKDIVGAIAG 539

Query: 491 SSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQL 533
            + I  ++IGAI +    TFV+V       + R +       K +Q+
Sbjct: 540 EANIPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQI 586


>gi|291522717|emb|CBK81010.1| Superfamily II DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 526

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 151/545 (27%), Positives = 262/545 (48%), Gaps = 37/545 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + I  A++E G+   T +Q   +   +  +D++  AQTG+GKT +FG+ +   
Sbjct: 6   FEDLGVDERILRAVTEMGFEEATPIQAKAIPEVMTGQDIIGQAQTGTGKTASFGIPMLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N          A+ + PTRELA+Q   E+  L      +  +   GG  + ++ R 
Sbjct: 66  VDPKNKHV------QAIVLCPTRELAIQSADEIRKLAKFMHGIKVLPIYGGQDIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++GTPGR+ DH+R   + +  LK VVLDEADEML++GFR+DIE IL  +P++R
Sbjct: 120 LKTGVQVLIGTPGRVMDHMRRHTIKLDDLKIVVLDEADEMLNMGFREDIETILSQTPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ YQK+A  V +       ++I+     V   +++  +  +L 
Sbjct: 180 QTLLFSATMPQPIMEIARTYQKNAKIVKVVKRELTVANIEQYYYEVRPKNKEEVLSRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +    ++VFC+T+  V    + L    +    L G++ QQ+R   +   R+GR  + +A
Sbjct: 240 IYNPALSVVFCNTKRQVDELVEGLKGRGYFAEGLHGDMKQQQRDRVMNGFRNGRTEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D++ V + +L  + E  +HR GRTGRAG+ G +   I      + + + 
Sbjct: 300 TDVAARGIDVDDVDAVFNYDLPQDDEYYVHRIGRTGRAGKNGKAFTFITGREFYKLKDIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPE--KI 416
           R     ++ +  PS+  +    A +I +    +  +       +M++  L K D     +
Sbjct: 360 RYCRTKIIAKQVPSLNDVANVKADKIFEKVAGMIDEDNLKPYIRMIEEKLEKEDYTTLDL 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA FLR+         E+                       G      G     +++G  
Sbjct: 420 AAAFLRMALGDEDKSVEV--------------------DDFGDTGAEDGMVRLFINIGKN 459

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQ 532
           QKA    ++  +   +GI    IG I +    TFVEV      D ++ +       + I 
Sbjct: 460 QKARPGDILGAIAGETGIAGSLIGTIDMYDKYTFVEVPKEYARDVLNAMSHARIKGRNIN 519

Query: 533 LKYLG 537
           ++   
Sbjct: 520 IEPAN 524


>gi|154508882|ref|ZP_02044524.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798516|gb|EDN80936.1| hypothetical protein ACTODO_01393 [Actinomyces odontolyticus ATCC
           17982]
          Length = 722

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 173/590 (29%), Positives = 281/590 (47%), Gaps = 49/590 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+ 
Sbjct: 52  LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q  + +E   A+T  +  V   GG     +   L+ GA
Sbjct: 112 RNV------QALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRGA 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I    L++SH++ +VLDEADEML +GF +D+E I  S+P  R   +F
Sbjct: 166 QVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALF 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---------NAIV 236
           SAT+  AI  +A+ + KD V+V +++E+     I     +V    +           A  
Sbjct: 226 SATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQH 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                  A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ +++G   
Sbjct: 286 IKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLD 345

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++         R 
Sbjct: 346 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGRL 405

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL-AKHDPE 414
            R+ +     +     PS  A+ E  A R+L+     ++  + D  K +   L  +   E
Sbjct: 406 RRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISVE 465

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------------RDDSRA---- 452
            IAA  +            +      +G+ R                   RD  R     
Sbjct: 466 DIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDKDRPLKGG 525

Query: 453 ---FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
               +   G R      + + + VG K + +   ++  +    GI+ + IG I + P  +
Sbjct: 526 ANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEIYPTFS 585

Query: 510 FVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
            V+++AD      +  ++ KG    Y+ G +   R  +  G +S   +DG
Sbjct: 586 LVDITADLSS--EQLSRISKG----YVSGRQLRIRVDEGPGGRSHGDRDG 629


>gi|78186470|ref|YP_374513.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166372|gb|ABB23470.1| ATP-dependent RNA helicase CsdA [Chlorobium luteolum DSM 273]
          Length = 590

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 159/582 (27%), Positives = 265/582 (45%), Gaps = 35/582 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL E GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S +   
Sbjct: 16  NLSEPIMRALKEVGYETPTPIQARTIPLMLEGRDVLGQAQTGTGKTAAFALPILSGIDLS 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  + P  L +APTRELA+QV                +   GG     + R L+ G
Sbjct: 76  ------LTDPQVLVLAPTRELAIQVAEAFHKYAEYLKGFHVLPIYGGQDYGGQLRMLKRG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DH+R   LN+  L+ +VLDEADEML +GF DD+E+IL  +PK+R++ +
Sbjct: 130 VHVVVGTPGRVMDHMRRGSLNLDSLQCLVLDEADEMLRMGFIDDVEWILGETPKERQVAL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A+ Y      V I  +      I  R  +V  S + + +  IL     
Sbjct: 190 FSATMPAPIRRIAQKYLNSPAEVTIEGKTTTVETIRQRYWIVGGSHKLDILTRILEVEPF 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F  T+       + L    +   AL+G++ Q +R   +  ++DG   + IATDVA
Sbjct: 250 EGMLIFVRTKTMTLELAEKLQARGYAAAALNGDMVQNQRERTVDQLKDGSLNIVIATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G ++  +    +     + +   
Sbjct: 310 ARGLDVERISHVINYDVPYDTESYVHRIGRTGRAGRSGEAILFVAPREKNMLYAIEKATR 369

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHD--PEKIAAG 419
             +     PS E I ++  ++  Q   D +  + + G   ++++    +HD    + AA 
Sbjct: 370 KRIELMELPSTEIINDKRIEKFKQRISDTIAAEDL-GFFTRLIEQYCHEHDVSELEAAAA 428

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF---KVGGGSRDNFKGSSWFSLSVGSK 476
              + +          P   V   +R R    A    K         +    + + VGS+
Sbjct: 429 LAAMVQGDTPLLFSAKPEKQVRREERDRPSDEAPFRKKPRRDDMYGDEKREVYRIEVGSE 488

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQ 532
              +A  ++  +    G++ ++IG I +    + VE+ A    D    LR+     + ++
Sbjct: 489 HGVQAGNILGAIINEIGLDPEAIGRISISDAFSTVELPAGMPNDIFQELRKVRVCGRQLR 548

Query: 533 LKYLG-------------GEKPDFRGYKSSGF--KSKNSQDG 559
           +  +               ++P     K  GF    K  + G
Sbjct: 549 VSKMEGGQGGGSPYGGKGAKRPARPSGKDGGFFTGPKKKRKG 590


>gi|148242659|ref|YP_001227816.1| superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
 gi|147850969|emb|CAK28463.1| Superfamily II DNA/RNA helicase [Synechococcus sp. RCC307]
          Length = 560

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 153/546 (28%), Positives = 269/546 (49%), Gaps = 22/546 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + EAL++ GY   + +Q A +   +  +D+L  AQTG+GKT AF L L + +  E 
Sbjct: 22  LPDSLLEALTKCGYEQPSPIQAAAIPELMLGRDLLGQAQTGTGKTAAFALPLLARINLE- 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A  P  L +APTRELA+QV    +   + T  +  +   GG     +   L+ G 
Sbjct: 81  -----ARHPQVLVLAPTRELAIQVSEAFQRYASCTPGLHVLPLYGGSDFRDQIHKLRRGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+R   LN+S L+ +VLDEADEML +GF DD++++L+  P +R++++F
Sbjct: 136 HVVVGTPGRVMDHMRQGTLNVSQLETLVLDEADEMLRMGFIDDVKWVLEQLPSERQVVLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +++ + ++   V I ++    S I  R +L+    + +A++ +L  HG  
Sbjct: 196 SATMPPEIKRISQQHLQNPAEVIIRTQKADASRIRQRHILLPHQQKLSALLRVLEAHGPG 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L         L+G++ Q  R   ++ ++ GR  V +ATDVAA
Sbjct: 256 GVIIFARTKAVTVTVAEALEAEGIACSVLNGDVPQSLRERTIERLKQGRIDVLVATDVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ +   + E  +HR GRTGRAGR+G ++  +    +R    L R    
Sbjct: 316 RGLDVDRIGLVVNYDAPFDSEAYVHRIGRTGRAGRQGDAILFLSYRERRLLHSLERAVGS 375

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLA---------KHDPE 414
           S+     PS   I ++    + Q    L  + +  D ++ V ++              P+
Sbjct: 376 SIDAMDVPSDAEINQQRLDNLQQQLSDLVSEPVPEDRQQEVALMGEILQRLQRESDVTPD 435

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++A   LR+ +          P   V+ R+           G       +    F + VG
Sbjct: 436 QLALAALRLAQGDSPLLVVPQPPMPVNNRNPQGRGQERRSPGR----VQQSMERFRVEVG 491

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            + + +   L+  +   SG++ + IG I +  D + V++       L + ++  + +Q +
Sbjct: 492 WQDRIKPGHLVGAIANESGLDGRQIGKITIFDDYSTVDLPEGMPPELMKRLQGVRVMQKE 551

Query: 535 YLGGEK 540
                +
Sbjct: 552 LRISRQ 557


>gi|300933595|ref|ZP_07148851.1| ATP-dependent RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 779

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 157/571 (27%), Positives = 268/571 (46%), Gaps = 35/571 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+     + EA+ + G+   + +QE  +   +   DV+  AQTG+GKT AF L + +
Sbjct: 112 TFDNLGLTSEVLEAVKKVGFEAPSPIQEQTIPVLMEGNDVVGLAQTGTGKTAAFALPILA 171

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P AL +APTRELA+QV    E      G +  +   GG +   +  
Sbjct: 172 RIDPSK------RHPQALVLAPTRELALQVAESFESFATHLGGIHVLPIYGGQAYGIQLS 225

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P+ 
Sbjct: 226 GLRRGAHIVVGTPGRVIDHLNKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPED 285

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  L+K Y  D   + + S  R   +I+   + V   ++  A+  IL
Sbjct: 286 KQVALFSATMPAGIRRLSKQYLNDPQEITVKSTQRTSENIEQDYLFVNHRNKLEALTRIL 345

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+       + L    F   A++G+++Q +R   +  ++DGR  + +
Sbjct: 346 EVTEFEAMIMFVRTKNETEELAERLRARGFNAAAINGDIAQAQRERTVDQLKDGRLDILV 405

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAGR G ++  +    +R  + +
Sbjct: 406 ATDVAARGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRSGRAILFVTPRERRLLKAI 465

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ-------DP-------LFLDSIQGDEKKMVD 405
            R    ++     PSV+A+ +   ++  +       DP       L  +     E  M D
Sbjct: 466 ERATKSTLNEIELPSVDAVNDARKEKFREALQESLGDPQLGVFRELVTEFATSTETPMED 525

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSR 460
           +  A     +    FL         P             R     +R     F       
Sbjct: 526 IAAALAAQIQAGEDFLMKEMPKEERPARRRREDRYGDEGRSGGGSYRSFEERFNKEAPRV 585

Query: 461 DNFKGSSW--FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-- 516
            +  G+    + LSVG +Q+     ++  +    G+N +  G I +  + + +E+ AD  
Sbjct: 586 TDRNGNELAVYRLSVGHRQRVRPGAIVGAIANEGGLNSRDFGRISIFSEHSLIELPADLP 645

Query: 517 --GVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
               + L +T    + I ++   G  P  R 
Sbjct: 646 REVFEQLDKTRVSGQLINIEPDPGA-PAGRP 675


>gi|260577582|ref|ZP_05845521.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258604306|gb|EEW17544.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 707

 Score =  296 bits (758), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 162/572 (28%), Positives = 275/572 (48%), Gaps = 48/572 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ + G+   + +Q   +   +   DV+  AQTG+GKT AF L + S +    
Sbjct: 81  LPENVLAAVKKVGFEVPSPIQAETIPVLMEGHDVVGLAQTGTGKTAAFALPILSRIDVSK 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 141 ------RHPQALVLAPTRELALQVAESFQSFSEHLGGIHVLPIYGGQAYGVQLSGLRRGA 194

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL+ +P  +++ +F
Sbjct: 195 HIVVGTPGRVIDHLEKGSLDISELRFMVLDEADEMLNMGFQEDVERILEDTPSDKQVALF 254

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y  D   + + +  R   +I+   +LV+  D+ +A+  IL     +
Sbjct: 255 SATMPSGIRRLSKQYLSDPREITVKATQRTSENIEQDYLLVSHRDKLDALTRILEITEFE 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    F   A++G++ Q  R   +  ++DGR  + +ATDVAA
Sbjct: 315 AMIMFVRTKNETEELAERLRARGFNAAAINGDIPQNLRERTVDQLKDGRLDILVATDVAA 374

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAGRKG ++  +    +R  + + R    
Sbjct: 375 RGLDVDRITHVFNYDIPHDTESYVHRIGRTGRAGRKGRAILFVTPRERRLLKSIERATKS 434

Query: 366 SVVWEPAPSVEAIRERDAQRI-------LQDP-------LFLDSIQGDEKKMVDVLLAKH 411
            +     P+V+A+ E   ++        L DP       L  +  + +E ++ D+  A  
Sbjct: 435 RLNEIELPTVDAVNEARKEKFRDSLTESLADPQIGIFRDLVKEYAESNEVELADIAAALA 494

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------- 461
              +    FL          +E         RDR+ DD+R+        D          
Sbjct: 495 AQLQAGEDFLM---------KEKPKEERPRRRDRYGDDNRSGGGAYKPFDERFNKEAPRI 545

Query: 462 ---NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-- 516
              N K  + + LSVG +Q+     ++  L    G++ +  G I +  + + VE+ AD  
Sbjct: 546 TDRNGKELAVYRLSVGHRQRVRPGAIVGALANEGGMSSRDFGRISIFAEHSLVELPADLP 605

Query: 517 --GVDLLRRTVKLDKGIQLKYLGGEKPDFRGY 546
                 L +T    + I ++   G  P+ R  
Sbjct: 606 MEVFHALDQTRVSGQLINIEPDPGA-PEGRPG 636


>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 610

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 169/609 (27%), Positives = 282/609 (46%), Gaps = 43/609 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL E GY   T +Q A ++P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLAEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           +++          +AP  L +APTRELAVQV             +  +   GG S+H++ 
Sbjct: 66  NSIDPNT------NAPQILVLAPTRELAVQVAEAFGSYAKFMKGLHVLPIYGGQSMHQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK
Sbjct: 120 NALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R++ +FSAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +
Sbjct: 180 QRQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G   + 
Sbjct: 240 LEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGTLDII 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPE 414
           + R     +     PS E + ER   R+   + + +  DS+   +  +  +    + D +
Sbjct: 360 IERATKSRISPMDVPSPETVTERRLSRLGEQVSEIIAKDSLDFMKGAVAQLCQQLEVDTD 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----------------- 457
            +AA  L+  +                 RD      R  +                    
Sbjct: 420 ILAAALLQQVQKDRPLQLPSIHERQRDSRDDRNSRDRNDRGSRDRSDRPRRESRPTPGDL 479

Query: 458 GSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
           G  D+ K         + + VG         ++  +   + I+ + IG I++   +T ++
Sbjct: 480 GKADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLFDQVTAID 539

Query: 513 V----SADGVDLLRRTVKLDKGIQLKYLGGEK-P---DFRGYKSSGFKSKNSQDGATKRF 564
           +      D +  L++     + + ++   G + P   D R  +     S + +    ++ 
Sbjct: 540 LPDGMPKDVLQHLKKVRVCGRPLNIREAEGAELPAGGDSRPPRRPRKPSGDRRPSGDRKP 599

Query: 565 KRFKGASKN 573
            R    S++
Sbjct: 600 HRKGNPSRD 608


>gi|145299438|ref|YP_001142279.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852210|gb|ABO90531.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 613

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 159/619 (25%), Positives = 269/619 (43%), Gaps = 54/619 (8%)

Query: 1   MKIFENIP--------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           M   E +P          + +AL + GY   + +Q A +   +   D+L  AQTG+GKT 
Sbjct: 1   MSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLLGQAQTGTGKTA 60

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGG 111
           AF L L S L A N           L +APTRELA+QV    +           +   GG
Sbjct: 61  AFALPLLSRLEAGNRN------TQVLVLAPTRELALQVAEACQRYAKHMPDFHVLPIYGG 114

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S   + R L+ GA +VVGTPGR+ D IR K L++S LKA+VLDEADEML +GF DD+++
Sbjct: 115 SSYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFIDDVDW 174

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I++  P  R++ +FSAT+   I  +A+ + K    + I S+      I  R   V    +
Sbjct: 175 IMEQCPSTRQVALFSATMPDQIRRVAQKHLKQPKEIKIVSKTSTAPTIRQRYWQVTGLHK 234

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +A+  +L     +  +VF  T+ +       LA       AL G++ Q+ R   +  +R
Sbjct: 235 LDAMTRLLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERTVDKLR 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + IATDV ARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +   
Sbjct: 295 QGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVAPR 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R    +      ++     PS E I +    +  +     +++ G+E ++   L+ + 
Sbjct: 355 ERRMLRAIEHATRQAIEPMKMPSTEDINQHRMTKFKER--IRETMMGEELELYLNLVNEL 412

Query: 412 DPEKIAAGFLRIHRA------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
             E  A                         PE     +   GRD  R D  +     G 
Sbjct: 413 IEEDSADPLELAAALAKLVQGDQPLLLDDSIPEPQFSSNDRGGRDFERRDGGSDFADRGD 472

Query: 460 RDNFK---------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
           R   +                   + + VG+    +   ++  +   + I  + IG I +
Sbjct: 473 RPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIGNIDI 532

Query: 505 QPDLTFVEVS----ADGVDLLRRTVKLDKGIQLKY------LGGEKPDFRGYKSSGFKSK 554
             D + V++     AD ++++++     + + +             P          KS 
Sbjct: 533 ADDFSTVDLPKGMTADVLEVIKKARVCQRPLMITRYTEVPAGSNTAPRPPRSDRPFNKSG 592

Query: 555 NSQDGATKRFKRFKGASKN 573
             ++G   + ++F G  + 
Sbjct: 593 ERREGGFNKDRKFGGNKRR 611


>gi|326329383|ref|ZP_08195707.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325952709|gb|EGD44725.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 615

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 166/594 (27%), Positives = 283/594 (47%), Gaps = 32/594 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EA+   GY   +++Q A +   L+ +DV+  AQTG+GKT AF L + S
Sbjct: 28  TFDSLGLSAGVLEAVKALGYETPSAIQAATIPTLLQGRDVVGLAQTGTGKTAAFALPVLS 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            L          +AP AL +APTRELA+QV    E   +   GV +    GG     +  
Sbjct: 88  NLDVYQ------NAPQALVLAPTRELALQVCEAFERYASNLDGVRILPVYGGQGYGPQLT 141

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S L+ +VLDEADEML++GF +D+E IL  +P+ 
Sbjct: 142 ALRRGVHVVVGTPGRIMDHLEKGTLDLSQLRFLVLDEADEMLNMGFAEDVETILAETPED 201

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  L+K Y +DA  +++ ++ + +++I  R ++V+   + +A+  IL
Sbjct: 202 KQVALFSATMPAQIRRLSKKYLRDAEEISVKAKTQTNTNITQRYLMVSYPQKVDALTRIL 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++      + L    F   A++G+++Q +R   +  ++DG   + +
Sbjct: 262 EVENFEGMIVFTRTKSETESLAEKLRARGFAATAINGDIAQAQREKTVNQLKDGSLDILV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ +L ++ E  +HR GRTGRAGR G ++  +    +     +
Sbjct: 322 ATDVAARGLDVERISHVVNYDLPTDVEAYVHRIGRTGRAGRTGDAISFVTPRERWLLRAI 381

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPE 414
            +      V    PSV+ +      R   D     ++Q  EK      +V   + +HD  
Sbjct: 382 EKHTKAQPVQMQLPSVDEVNATRLSRF--DDGITAALQEGEKIEFFRDVVRHYVDEHDVP 439

Query: 415 KIAA----------GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           ++                +       P            DR  +     +    SR N +
Sbjct: 440 EVDVAAALAAVLHGEEPLLLEPEPEKPAYEERRGRRDRDDRGGERGGERRETSRSRGNGQ 499

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----L 520
             + + + VG + + E R ++  +    G+ R   G I ++ D + VE+ AD        
Sbjct: 500 PLATYKIQVGKRHRVEPRQIVGAIANEGGLRRADFGNISIRNDFSLVELPADLAPETWKA 559

Query: 521 LRRTVKLDKGIQLKYLGGEKPDFR--GYKSSGFKSKNSQDGATKRFKRFKGASK 572
           L  T    K I+L    G  P  R  G       S+     A  R ++ +   K
Sbjct: 560 LESTRISGKLIELSEDSGGGPVRRSGGRFDRSQGSRRGAPEAGDRPRKPRQKRK 613


>gi|198282877|ref|YP_002219198.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666755|ref|YP_002425078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247398|gb|ACH82991.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518968|gb|ACK79554.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 617

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 167/610 (27%), Positives = 281/610 (46%), Gaps = 54/610 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A++E GY   + +Q   + P L  +DV+  AQTG+GKT AF L L S +    
Sbjct: 14  LAEPIQKAVTEIGYEQPSPIQAQSIPPLLEGRDVIGLAQTGTGKTAAFALPLLSRVDL-- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  AP  L +APTRELA+QV   ++           +   GG ++  + + LQ G 
Sbjct: 72  ----GLRAPQLLVLAPTRELAIQVAEAMQSYAKFLPGFHVLPIYGGQAMTLQLKQLQRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R K L + HL+AVVLDEADEML +GF D +E IL  +P+ R++ +F
Sbjct: 128 QVVVGTPGRIQDHLRRKTLRLDHLQAVVLDEADEMLRMGFIDAVEDILKHTPEGRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +AK Y ++ + + I S     + I  R   V+ + + +A+  IL    + 
Sbjct: 188 SATMPDAIRRIAKTYLRNPLEIRIKSATTTVAAIRQRYWQVSGTHKLDALTRILEVEESN 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ +     + L    +   AL+G+LSQ  R   ++ ++ G   + +ATDVAA
Sbjct: 248 AWLVFVRTKTATVELAERLEARGYACGALNGDLSQAMREQTIERLKAGTLDIVVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++ E  +HR GRTGRAGR G ++  +    +     + R    
Sbjct: 308 RGLDVDRISHVINYDIPNDTEAYVHRIGRTGRAGRTGDAILFVAPRERHLLHAIERATGQ 367

Query: 366 SVVWEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           ++     PS+E + +R   +           QD    +++  D ++  DV L +     I
Sbjct: 368 TITAMHLPSIEDVADRRMSQFKDQLTEVLNSQDLAVFETLIADYQRESDVGLGE-----I 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG----------- 465
           AA    + +           VS     D     +          D+ +G           
Sbjct: 423 AAALAYMVQKERPLIPVEAEVSRPMRSDSAGSGAGRPPSSRRRADDERGARPPRAAAASG 482

Query: 466 ------SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD--- 516
                    F L VG    A+ + ++  +   +GI  ++I  +++  + T VE+ AD   
Sbjct: 483 GGDDVPMRRFRLDVGESHGAQVKNIVGAIANEAGIPSRNIRKVQINAEHTTVELPADIQP 542

Query: 517 -GVDLLRRTVKLDKGIQLKYLG----------GEKPDFRGYKSSGFK--SKNSQDGATKR 563
             +  L++     + +Q+                +P          K  S  ++ G  K 
Sbjct: 543 SVLQHLQKVWVAGRPLQIAPTDAGASAGRASARPRPAIHEGSRVPRKILSARTEKGEYKT 602

Query: 564 FKRFKGASKN 573
            +R  GA+K 
Sbjct: 603 KERGAGATKR 612


>gi|260434308|ref|ZP_05788278.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
 gi|260412182|gb|EEX05478.1| cold-shock deAd box protein a [Synechococcus sp. WH 8109]
          Length = 607

 Score =  296 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 155/547 (28%), Positives = 266/547 (48%), Gaps = 25/547 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   L+++GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 64  FSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE--- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S    P AL +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 121 ---SGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGV 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ S L+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+K Y KD   V I +++++   I  R++ V +  +  A+  +L   G +
Sbjct: 238 SATMPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGE 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 298 GVIIFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R    
Sbjct: 358 RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQ 417

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA------KHDPEKI 416
            +     P   AI +    R+   L D         DE  ++  L+       +  P+++
Sbjct: 418 PIEAMEVPGNTAINQGRLDRLRKRLSDAAQSQRPDADEAALLQELMQRVATELELTPDQL 477

Query: 417 AAGFLRIHRA-----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           A   L +             + I                R  +    +R   +    + +
Sbjct: 478 AMAALNLAIGPDALLRKGDDDWIQNTRRNDRDRDRHSGDRRERRERPARAPEENMQRYRV 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527
            VG + + +   L+  +   +G+  + IG I++  + + V++      D  + L+R   +
Sbjct: 538 EVGHRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSLVDLPKGMPEDVFNSLQRLRVM 597

Query: 528 DKGIQLK 534
           ++ +Q+ 
Sbjct: 598 NRELQIS 604


>gi|87121489|ref|ZP_01077378.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86163332|gb|EAQ64608.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 617

 Score =  296 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 147/560 (26%), Positives = 258/560 (46%), Gaps = 36/560 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++GY   + +Q   +   L   D+L  AQTG+GKT AF L L S +  ++
Sbjct: 15  LDANVLKAVVDQGYEQPSPIQAQSIPHLLEGHDLLGQAQTGTGKTAAFALPLLSRINPKD 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                      L +APTRELA+QV    +           +   GG+S   + R L+ G 
Sbjct: 75  KN------TQLLVLAPTRELAIQVSEAFQTYARNIPDFHVLPIYGGMSYDTQLRQLRRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR K L +  L+A+VLDEADEML +GF DD+E+IL+ +P++R++ +F
Sbjct: 129 QVVVGTPGRVMDHIRRKTLKLDSLQALVLDEADEMLRMGFIDDVEWILEHTPEQRQIALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A  +  +   V I ++   ++ I  +   V+   + +A+  IL      
Sbjct: 189 SATMPSVIRQVANRHLNNPKEVKIVTKTATNTSITQKYWQVSGLHKLDALTRILEMSEHD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A+     + L        AL+G++SQ  R   ++ ++ G+  + +ATDV A
Sbjct: 249 GMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVERIKRGQIDILVATDVVA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +R  + + R    
Sbjct: 309 RGLDIDRISHVVNYDIPYDTESYVHRIGRTGRAGRTGNAILFVAHRERRMLQAIERATRQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     P+   I  +   R  Q     D++   +      L   +  E      K+AA 
Sbjct: 369 PIERMQLPTASDINTQRVNRFKQR--ITDTLDNADLDFFIELAESYQKEHEAEPLKVAAA 426

Query: 420 FLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------------ 464
              + +     L +  E+         +R     R+ +     R                
Sbjct: 427 LAHMAQGKNPLLLSEMEVRQERRERNDERNGRRERSDREPREPRKQRPLTLEPMPLKDSP 486

Query: 465 --GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGV 518
               + + LSVG +   +   ++  +   + I  + IG I +  D   V++ A    D V
Sbjct: 487 DTKMTRYILSVGYRDGVKPGNIVGAIANEADIESRYIGHIEIYEDYATVDLPAEMKSDSV 546

Query: 519 DLLRRTVKLDKGIQLKYLGG 538
           + L +T    +  ++  L  
Sbjct: 547 EKLAKTRICGQRAEVSVLES 566


>gi|225569182|ref|ZP_03778207.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
 gi|225161981|gb|EEG74600.1| hypothetical protein CLOHYLEM_05264 [Clostridium hylemonae DSM
           15053]
          Length = 526

 Score =  296 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 148/533 (27%), Positives = 260/533 (48%), Gaps = 33/533 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     I +A+ + G+   + +Q   +      +D++  AQTG+GKT AFG+ L   
Sbjct: 6   FEELELCPEIMKAVKKMGFEEASPIQAKAIPLVREGRDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRD 120
           +  +N +        A+ + PTRELA+QV  E+  L     G+ V    GG  + ++ R 
Sbjct: 66  IDPKNKK------LQAVVLCPTRELAIQVADEIRTLAEYMHGIKVLPIYGGQEIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++GTPGR+ DH+R K + + H+  VVLDEADEML++GFR+DIE IL+  P++R
Sbjct: 120 LKSGVQLMIGTPGRVMDHMRRKTVKMEHVHTVVLDEADEMLNMGFREDIETILEGVPQER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I  + K +QK A  V +  +     +I+     V   +++  +  +L 
Sbjct: 180 QTVLFSATMPKPILDITKKFQKHAEIVKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+  V      L    +    L G+L Q +R   +Q  R G+  + +A
Sbjct: 240 IYNPKLSVVFCNTKKQVDILVNGLLGRGYFAAGLHGDLKQAQRDRVMQGFRSGKTDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      +   + 
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLREIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEKI 416
           R     +  +  PS++ +     ++++++   +   +      +    ++    +    I
Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMEKVMEEASRIIEQEDLGTFIQLVQEEINDTDYTSMDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L++           T  +  +  D F D          +     G     +++G K
Sbjct: 420 AAALLKM----------CTGTAEETDVDNFED----------TGAEEPGMVRLFINIGKK 459

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            KA+   ++  +   SG+  + +G I +    TFVEV  +    +   V   K
Sbjct: 460 HKAKPGDILGAIAGESGMPGKVVGTIDMYDKYTFVEVPREYAKEVLSAVNHTK 512


>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 802

 Score =  296 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 154/625 (24%), Positives = 268/625 (42%), Gaps = 60/625 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EA+   GY   + +Q   +   L+  ++L +AQTG+GKT AF L L S
Sbjct: 125 TFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLS 184

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       S       L + PTRELA+QV   ++    K   V  V   GG  +  + R
Sbjct: 185 RINFNGRETS------MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLR 238

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+  A IVV TPGRL DHI+   +++  +KA+VLDEADEMLD+GF +D+E IL   P  
Sbjct: 239 ALKRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPAD 298

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  ++  +   +  +     I  +     +I  R +LV    +  A+  +L
Sbjct: 299 AQRALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVL 358

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F  T+ + +   + L    F V  L+G+L+Q  R   +  ++ G+  + +
Sbjct: 359 EGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVV 418

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  I    +R  + +
Sbjct: 419 ATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTI 478

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---------------LQDPLFLDSIQGDEKKM- 403
            +     +     P+ E I ++                     ++ +   + +G   K  
Sbjct: 479 EKATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDG 538

Query: 404 ---VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF------- 453
               D  + +   E IAA  +++++        + P+     R       R F       
Sbjct: 539 VALEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNE 598

Query: 454 --------------KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499
                         +   G     +G   + L VG       R ++  +   + IN  +I
Sbjct: 599 DFGLNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNI 658

Query: 500 GAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK- 554
           G I++    + VE    +  D +D+L          + + +  E P+     +    S+ 
Sbjct: 659 GRIKLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASRE 718

Query: 555 ------NSQDGATKRFKRFKGASKN 573
                   + G     +R  G  KN
Sbjct: 719 ERRSFHRDRKGGFHDDERRGGFRKN 743


>gi|89094261|ref|ZP_01167203.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
 gi|89081516|gb|EAR60746.1| DEAD/DEAH box helicase-like [Oceanospirillum sp. MED92]
          Length = 592

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 154/585 (26%), Positives = 271/585 (46%), Gaps = 28/585 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + + L E GY   + +Q A +   L  +D+L  AQTG+GKT AF L L S L  ++
Sbjct: 14  IAEPVLKVLDEIGYETPSPIQAASIPHLLEGRDLLGIAQTGTGKTAAFSLPLLSRLNLKS 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                      L +APTRELA+QV    +           +   GG +   + R L+ GA
Sbjct: 74  RN------TQLLILAPTRELAIQVAEACQTYARNLPDFHVLPIYGGQAYDSQLRQLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L +  L+A+VLDEADEML +GF DD+ ++L+ +P+ R++ +F
Sbjct: 128 QVVVGTPGRVMDHMRRGSLKLDKLQALVLDEADEMLRMGFIDDVNWVLEHTPEDRQIALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I ++A+ +  D   V I ++    + I  + + V+ + + +A+  IL      
Sbjct: 188 SATMPAQIKSVAEAHLNDPAEVRIKAKTATATTITQKYLRVSGNQKLDAVTRILEMQAFD 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+++     + L+   +   AL+G++SQ  R   +  ++ G+  + IATDV A
Sbjct: 248 AMLVFVRTKSATVELAEKLSARGYACEALNGDISQNLRERTIDKLKRGQIDILIATDVVA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +    QR  + + R    
Sbjct: 308 RGLDVERISHVLNYDIPYDTESYIHRIGRTGRAGREGEAILFVSPREQRMLKSIERATRQ 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAAG 419
            +     PS + I E+  QR +       +I G +      LL ++      DP  IA+ 
Sbjct: 368 KIESMQLPSTDDINEKRVQRFVDR--ISQTIDGQDLDFFRNLLTEYQQEHDADPIVIASA 425

Query: 420 F---------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                     L +         E         RD+      + K              + 
Sbjct: 426 LAHLLQGETPLLMKEQERPPRREREGRDGRDNRDKRPPKGMSTKAKALKDHPDVEMKRYL 485

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           ++VG       + ++  +   + ++   IG+I +  D + V++ A      +  LR+ V 
Sbjct: 486 INVGHDNDVAPKNIVGAIANEADLDANFIGSIEIFDDCSTVDLPAGMPKSVLQQLRKVVV 545

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             + + +K   G     R    +      +  G  +R K  + + 
Sbjct: 546 CGQRLNIKEAAGGGGGQRRGGGNHRGKGGNHRGKPRRNKDSRKSK 590


>gi|239626754|ref|ZP_04669785.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516900|gb|EEQ56766.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 572

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 150/549 (27%), Positives = 260/549 (47%), Gaps = 37/549 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L   +  + 
Sbjct: 11  LDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPLLQKVDPK- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     A+ + PTRELA+QV  E+  L         +   GG  + ++ R L++G 
Sbjct: 70  -----VKKLQAIILLPTRELAIQVAEEMRRLAKFMHGTKVLPIYGGQDIVKQIRSLKDGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+R K + + H+  VVLDEADEML++GF +D+E IL   P++R+ LMF
Sbjct: 125 QIVVGTPGRVMDHMRRKTVKMDHVHTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ +Q D V V +  +      +      V   ++   +  +L  +  K
Sbjct: 185 SATMPQAIADIARKFQDDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMCRLLDMYAPK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAA
Sbjct: 245 LSIVFCNTKRQVDELVQALQGRGYFAEGLHGDLKQVQRDRVMGSFRNGRTDILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R    
Sbjct: 305 RGIDVGDVEAVFNYDVPQDDEYYVHRIGRTGRAGREGKAFSLVVGKEVYKLRDIQRYCKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIAAGF 420
            ++ +  PS+  I E   +++L   + + +   D  KMV++     +   +    +AA  
Sbjct: 365 KIIPQAIPSLNDITEIKVEKVLDQVMDILN-DNDLTKMVNIIEKKLIEEDYTSMDLAAAL 423

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR-------------------DDSRAFKVGGGSRD 461
           L+++            +   S  D                         R       + D
Sbjct: 424 LKMNMGDDNEDVIDCTMPARSLDDLDSYGRGMGRGRGRERGSSSAYGRGRRGATDRAAID 483

Query: 462 NFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              G      +   +++G  Q+     ++  +   SGI  + +G+I +    TFV+V   
Sbjct: 484 YVLGEGDGQMARLFINIGKAQRVTPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGQ 543

Query: 517 GVDLLRRTV 525
             D + + +
Sbjct: 544 YADEVLKAM 552


>gi|293192664|ref|ZP_06609618.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292820171|gb|EFF79168.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 722

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 173/590 (29%), Positives = 281/590 (47%), Gaps = 49/590 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+ 
Sbjct: 52  LPEEILAAVTDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q  + +E   A+T  +  V   GG     +   L+ GA
Sbjct: 112 RNV------QALVLAPTRELAMQSAQAIEDFAARTARLDVVPVYGGSPYGPQIGALKRGA 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I    L++SH++ +VLDEADEML +GF +D+E I  S+P  R   +F
Sbjct: 166 QVVVGTPGRVIDLIEKGALDLSHVRMLVLDEADEMLRMGFAEDVETIASSAPDDRLTALF 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---------NAIV 236
           SAT+  AI  +A+ + KD V+V +++E+     I     +V    +           A  
Sbjct: 226 SATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALSRVLATRAQH 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                  A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ +++G   
Sbjct: 286 IKEGQEEADAAIVFVRTRADVEEVSLELSSRGFRAAGISGDVAQTERERMVERLKNGSLD 345

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++         R 
Sbjct: 346 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGREGRALTFFTPREHGRL 405

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLL-AKHDPE 414
            R+ +     +     PS  A+ E  A R+L+     ++  + D  K +   L  +   E
Sbjct: 406 RRIEKLTGTEMEEVEIPSPAAVSEFRASRLLEGLSARIERGRLDMYKRLLADLGDEISVE 465

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------------RDDSRA---- 452
            IAA  +            +      +G+ R                   RD  R     
Sbjct: 466 DIAAALMATAVGDEGPAPRVEKDRRGNGKIRREEQLDESGEFVGATFEAGRDKDRPLKGG 525

Query: 453 ---FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
               +   G R      + + + VG K + +   ++  +    GI+ + IG I + P  +
Sbjct: 526 ANGARRRAGGRPAPGSGTRYRIEVGKKDRVKPGSIVGAIAGEGGIDGRDIGNIEIYPTFS 585

Query: 510 FVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG 559
            V+++AD      +  ++ KG    Y+ G +   R  +  G +S   +DG
Sbjct: 586 LVDITADLSS--EQLSRISKG----YVSGRQLCIRVDEGPGGRSHGDRDG 629


>gi|167032455|ref|YP_001667686.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166858943|gb|ABY97350.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 560

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 158/550 (28%), Positives = 273/550 (49%), Gaps = 27/550 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +   
Sbjct: 12  DLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + R ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I ++A+ + ++   V I ++ +  + I+   ++V    +  A++ +L     
Sbjct: 186 FSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGF 420
             V     P+ +A+ +   +++     PL  ++ +    ++ D L +        +A+  
Sbjct: 366 QKVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTSDLGCSARALASAL 424

Query: 421 LRIHRAG----LCAPEEITPV---------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           LR    G    L A E   P+               DR     R  +         +G  
Sbjct: 425 LRKATNGQALDLAAVEREQPLVPGVGAPRGERSERPDRGERPDRGDRERRAPLPLAEGRV 484

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
               ++G++    A+ L+  +    G+ R +IG I+V+   + VE+  DG++ L   +K 
Sbjct: 485 RCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKD 544

Query: 528 DK--GIQLKY 535
            +  G QLK 
Sbjct: 545 TRVAGKQLKL 554


>gi|323358213|ref|YP_004224609.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323274584|dbj|BAJ74729.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 585

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 156/559 (27%), Positives = 272/559 (48%), Gaps = 28/559 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +AL + GY   +++Q A +   L+ +DV+  AQTG+GKT AF L + S
Sbjct: 20  TFADLGLDANVLKALKDVGYETPSAIQAATIPVLLQGRDVVGLAQTGTGKTAAFALPVLS 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       +    P AL +APTRELA+QV    E   A    V  +   GG    ++  
Sbjct: 80  QME------TGHKNPQALVLAPTRELALQVCEAFEKYAAHIKGVSVLPVYGGQGYGQQLS 133

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++VGTPGR+ DH+    L++S LK +VLDEADEML +GF +D+E IL  +P  
Sbjct: 134 ALRRGVDVIVGTPGRIMDHLDKGTLDLSELKFLVLDEADEMLKMGFAEDVETILADTPST 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  ++  Y  D   + + ++    ++I  R ++V+   + +A+  IL
Sbjct: 194 KQVALFSATMPAQIRRISAQYLNDPEEITVKTKTTTSANITQRYLIVSYQQKIDALTRIL 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+       + L    +   A++G+++Q +R   +  ++ G+  + +
Sbjct: 254 EVENFEGMIVFTRTKNETETVAEKLRARGYTAAAINGDIAQVQRERTVNQLKSGKLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ +L  + E+ +HR GRTGRAGR G ++  +    +R    +
Sbjct: 314 ATDVAARGLDVERISHVVNYDLPIDTESYVHRIGRTGRAGRTGDAISFVTPRERRMLTAI 373

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAKHDPE 414
            +     +     PSV+ +      R   D     +++        + +V   ++ HD  
Sbjct: 374 EKATRQPLTEMSLPSVDDVNATRLTRF--DDAITTALEDTAAIATFRDVVAHYVSHHDVP 431

Query: 415 KIAAGFLRIHRAGLCAP---EEITPVSLVSGRDRFRDDSRAFKVG-----GGSRDNFKGS 466
           +          A    P   EE T        DR    SR  + G     G  R++    
Sbjct: 432 EADVAAALAVVAQGDTPLLLEEETLRQQRFDNDRPDRSSRDSRDGGSRDSGPRRESSGRF 491

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLR 522
           + + ++VG +Q+ E R ++  L    G+ R   GAI+++ D + VE+ AD     ++ L 
Sbjct: 492 ATYRIAVGRRQRVEPRQIVGALANEGGLRRNDFGAIQIRQDFSLVELPADLSRDTINRLA 551

Query: 523 RTVKLDKGIQLKYLGGEKP 541
            T    + I L+   G + 
Sbjct: 552 DTRISGQLIDLRLDQGGRS 570


>gi|170720663|ref|YP_001748351.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169758666|gb|ACA71982.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 559

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 160/549 (29%), Positives = 273/549 (49%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  A+   GY   +++Q   +   L   D++  AQTG+GKT AF L + + +   
Sbjct: 12  DLNPNIVAAVLATGYEEPSAIQHQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + R ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I ++A+ + ++   V I S+ +  + ID   ++V    +  A++ +L     
Sbjct: 186 FSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGF 420
             V     P+ +A+ +   +++     PL  ++ +    ++ D L       P  ++A  
Sbjct: 366 QKVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTEALGCSPRALSAAL 424

Query: 421 LRIHRAG----LCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           LR    G    L A E   P+              DR     R  +         +G   
Sbjct: 425 LRKATNGQALDLAAVEREQPLVPSFAPRGERPERGDRAERSDRGERERRAPLPLAEGRVR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLTKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|149907510|ref|ZP_01896257.1| Helicase [Moritella sp. PE36]
 gi|149809180|gb|EDM69109.1| Helicase [Moritella sp. PE36]
          Length = 615

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 157/592 (26%), Positives = 270/592 (45%), Gaps = 37/592 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I + L++ GY   T +Q   +       DVL  AQTG+GKT AF L L S +   
Sbjct: 14  NLPEPILQVLNDLGYEAPTPIQAECIPLLQNGGDVLGMAQTGTGKTAAFALPLLSNID-- 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               +  + P  L +APTRELA+QV    +           +   GG S   + + L+  
Sbjct: 72  ----TALTKPQILVLAPTRELAIQVAEAFQTYSRHMRGFHVLPIYGGQSYPIQLKALKRN 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGR+ DHI    L++S +KA+VLDEADEML +GF DD+E IL  +P +R+M +
Sbjct: 128 PQVIVGTPGRVIDHINRGTLDLSGIKALVLDEADEMLRMGFIDDVESILSKTPAERQMAL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHG 243
           FSAT+   I  + K +  +   V IA++     +I+    ++  L  + + +  IL    
Sbjct: 188 FSATMPEEIRRITKRFMTNPTSVKIANKTSTVENIEQKCLIIGGLQAKLDGLTRILETED 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+       + L    +   AL+G+L+Q  R   +  ++ G+  + IATDV
Sbjct: 248 YDGVIIFARTKTMTVELAEKLEARGYSAAALNGDLNQAMRERTVSRLKSGQLDIVIATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P ++LVI+ ++ ++ E+ +HR GRTGRAGRKG ++       +R  + + R  
Sbjct: 308 AARGLDVPRIDLVINYDIPTDTESYVHRIGRTGRAGRKGTAILFAAPRERRLLKAIERAT 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMV---DVLLAKHDPEKIAA 418
              +     PS + + ++           L S +   D  K +        +     +A+
Sbjct: 368 RQPLTMMDLPSRDDVTKKRISSFRDQLSALSSGKENLDFYKNLVGQLSEELELSELDLAS 427

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD------------------RFRDDSRAFKVGGGSR 460
             L + +     P  + P +    R                   R     R  +   G R
Sbjct: 428 ALLFMAQK--EKPLVLPPEAPRRERSFRDDDRGDRGRDRNDRGERRDRGDRPERGERGER 485

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
                   F + VG     + + ++  +   + IN ++IG IR+  D + +E+      +
Sbjct: 486 RPAAEMEVFRIEVGRADGVQVKNIVGAIANEANINSRNIGGIRLHDDYSTIELPKGMPSE 545

Query: 517 GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
            +  L++    +K +++  L G   + R  +S   +  +       R  R +
Sbjct: 546 QLQQLQQVYVCNKALRMSKLEGVAAEGRQERSRPARDNDRPARDNDRGHRGQ 597


>gi|257068572|ref|YP_003154827.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559390|gb|ACU85237.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 669

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 164/563 (29%), Positives = 279/563 (49%), Gaps = 29/563 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +P  +  A+ E G+   +++Q   + P L  +DV+  AQTG+GKT AFGL L +
Sbjct: 85  SFDDIALPAPLRRAVDELGFTTPSAIQAQAIPPLLEGRDVIGVAQTGTGKTAAFGLPLLA 144

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +              AL +APTRELA+QV   +       G +  V   GG     + R
Sbjct: 145 AIDPS------LREVQALVLAPTRELAMQVADAIASFATSIGGLDVVALYGGSPYGPQER 198

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA +VVGTPGR+ DH+R   L +  ++  VLDEADEML +GF +D+E IL  SP  
Sbjct: 199 ALARGAQVVVGTPGRVMDHMRRTNLRLDTIRVAVLDEADEMLRMGFAEDVEEILSHSPDT 258

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+  AI  +A+ + +D VRV+++ ++     +     +V    R  A+  +L
Sbjct: 259 RQVALFSATMPAAIQRVAQTHMQDPVRVSVSPQSSTVKSVHQTYAVVPFRHRTGALARVL 318

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ AIVF  TRA+       L        ++SG++ Q+ER   ++ +RDG  +V +
Sbjct: 319 ATSDAEAAIVFVRTRAAAEEVGTALVGRGLIAASISGDVPQKEREKIVERLRDGSLQVLV 378

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E+ +HR GRTGRAGR G ++  I  + +R  + +
Sbjct: 379 ATDVAARGLDVERIGLVVNFDVPKEAESYVHRIGRTGRAGRSGEALTFIGPHERRALKNI 438

Query: 360 FREANVSVVWEPAPSVEAIRE-RDAQRILQDPLFLDSIQGD-EKKMVDVLLAKH--DPEK 415
            R    ++     PS   + + R A ++ Q P  ++  + +  ++++   +A+H  DP +
Sbjct: 439 ERATKQTLAEAVIPSPRDVSKHRLAAQLTQVPARVERGRLELYRELIGQFVAEHDIDPLE 498

Query: 416 IAAGFLRIHRAGL-----CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +AA    +             EE T   L   R    D  R  +         +G + + 
Sbjct: 499 LAAALGAMSVGDEGPGTATEEEEFTGAKLGEDRSPRGDRDRGPREAAA---TERGYTSYK 555

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVK 526
           + VG    A    ++  +    G++ + IG I++ P    V++    S + ++ + R   
Sbjct: 556 VGVGHTHGARPPGIVGAITGEGGLHGKDIGKIQIFPHFALVQIRGSLSPEQMERISRAKV 615

Query: 527 LDKGIQLKYLGGEKPDFRGYKSS 549
             + +++    G     RG K  
Sbjct: 616 GGRELRIGPDHGP----RGGKGP 634


>gi|315604272|ref|ZP_07879338.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313978|gb|EFU62029.1| ATP-dependent RNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 699

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 173/619 (27%), Positives = 283/619 (45%), Gaps = 63/619 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  A+++ G+   T +Q A + P L  +DV+  AQTG+GKT AFGL L + + A+ 
Sbjct: 44  LPDEILAAITDMGFRVPTPIQAAAIPPLLELRDVVGIAQTGTGKTAAFGLPLLAIVDADE 103

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q  + +E   A+   +  V   GG     +   L+ GA
Sbjct: 104 RDV------QALVLAPTRELAMQSAQAIEDFAARAARLDVVPVYGGSPYGPQIGALKRGA 157

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I    L++S+++ +VLDEADEML +GF +D+E I  + P +R   +F
Sbjct: 158 QVVVGTPGRVIDLIEKGALDLSNVRMLVLDEADEMLRMGFAEDVETIASAVPAQRLTALF 217

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---------NAIV 236
           SAT+  AI  +A+ + KD V+V +++E+     I     +V    +           A  
Sbjct: 218 SATMPAAIEKVAREHLKDPVKVAVSTESSTVDTIHQTYAVVPYKHKIGALCRVLATRAQH 277

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                  A  AIVF  TRA V   +  L+   F+   +SG+++Q ER   ++ ++ G   
Sbjct: 278 IARGQEEADAAIVFVRTRADVEEVSLELSARGFRAAGISGDVAQTERERMVERLKTGALD 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++         R 
Sbjct: 338 VLVATDVAARGLDVERISLVVNFDVPREPEAYVHRIGRTGRAGRQGRALTFFTPREHGRL 397

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----D 412
            R+ +     +     PS  A+ E  A+R+L+       I+     M   LLA+      
Sbjct: 398 RRIEKLTGTDMEEVAIPSPAAVSEFRARRLLE--GIGARIERGRLDMYRGLLAELGQETS 455

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF------------------RDDSRA-- 452
            E IAA  +            +      +G+ R                   RD  R   
Sbjct: 456 VEDIAAALVASAVGDEGPAPRVEKDRRGAGKVRREERLDESGEFVGASFEAGRDKDRPIK 515

Query: 453 -----FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
                 +   G R      + + + VG K + +   ++  +    GI+ + IG I + P 
Sbjct: 516 GGADGARRRAGGRSAPGSGTRYRVEVGKKDRVKPGSIVGAIAGEGGIDGRDIGHIEIYPT 575

Query: 508 LTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGGEKPDFRGYK------------SSGF 551
            + V+++AD     +  + +     + ++++   G     RG +            S G 
Sbjct: 576 FSLVDITADLSGEQLSRISKGYVSGRQLRIRVDEGPGRYPRGDRDGFDRDARTRGGSGGQ 635

Query: 552 KSKNSQDGATKRFKRFKGA 570
           + +   D   KR  RF+  
Sbjct: 636 REERPGDRGDKRPHRFEKG 654


>gi|26988598|ref|NP_744023.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|148549053|ref|YP_001269155.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|24983373|gb|AAN67487.1|AE016375_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
 gi|148513111|gb|ABQ79971.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
 gi|313499970|gb|ADR61336.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 559

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 157/549 (28%), Positives = 272/549 (49%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +   
Sbjct: 12  DLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + R ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I ++A+ + ++   V I ++ +  + I+   ++V    +  A++ +L     
Sbjct: 186 FSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGF 420
             V     P+ +A+ +   +++     PL  ++ +    ++ D L          +A+  
Sbjct: 366 QKVAEARLPNAQAVLDARIKKLTSSLAPLVAEA-EATHGELFDRLTTDLGCSARALASAL 424

Query: 421 LRIHRAG----LCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           LR    G    L A E   P+              +R     R  +         +G   
Sbjct: 425 LRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERGERPDRGDRERRAPLPLAEGRVR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R +IG I+V+   + VE+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|116072449|ref|ZP_01469716.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116064971|gb|EAU70730.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 607

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 158/550 (28%), Positives = 269/550 (48%), Gaps = 25/550 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+E+GY + + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 64  FSEALLKTLAEKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE--- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S    P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 121 ---SGRKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGV 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ S L ++VLDEADEML +GF DD+E+IL+  PK+R++++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+K Y  D   V I ++++    I  RA+ V +S +  A+  +L   G +
Sbjct: 238 SATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGE 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L     QV  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 298 GVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R    
Sbjct: 358 RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQ 417

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA------KHDPEKI 416
            +     P   AI +    R+   L +     +   DE  ++  L+       +  PE+I
Sbjct: 418 PIELMEVPGNTAINQGRLDRLRKRLSEAANGVAANSDESALIQELMQRVATELELTPEQI 477

Query: 417 AAGFLRIHRA-----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           A   L +             + I     +      R + R  +    +R   +    + +
Sbjct: 478 ALAALNLAIGPNGLLRKGDDDWIQNTQRLDRDRGDRGERRERRTDRPARAPEEDMQRYRV 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527
           +VG + + +   L+  +   +G+  +SIG I++  + + V++      D  + LR    +
Sbjct: 538 AVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPEDIFNSLRTLRVM 597

Query: 528 DKGIQLKYLG 537
           ++ +Q+    
Sbjct: 598 NRELQITQDS 607


>gi|119946809|ref|YP_944489.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865413|gb|ABM04890.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 581

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 146/568 (25%), Positives = 258/568 (45%), Gaps = 47/568 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + + +SE GY   + +Q   +   L  KDVL  AQTG+GKT AF L L + +   
Sbjct: 20  NLPEALTKVVSELGYETPSPIQAQCIPLLLEGKDVLGLAQTGTGKTAAFALPLLANIDIN 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                  + P  LA+APTRELA+QV    +           +   GG S   + + L+ G
Sbjct: 80  ------LNQPQVLALAPTRELAIQVAEAFQTYARHLRGFHVLPIYGGQSYDIQFKQLKRG 133

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ DH++ K L++S++K ++LDEADEML +GF DD+E I+   P KR+  +
Sbjct: 134 PQVVVGTPGRIMDHLKRKTLDLSNIKTLILDEADEMLRMGFIDDVETIMKEMPDKRQTAL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  + K Y      V I S+     +I+ +  +V   ++ +A+  +L     
Sbjct: 194 FSATMPDQIKRITKRYMNSPTEVKIQSKTSTVENIEQKCWIVRGVNKLDALTRMLETEEY 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +     + L    ++  AL+G+++QQ R   +  ++ G   + +ATDVA
Sbjct: 254 DGVIIFARTKTATVELAERLEARGYRSAALNGDMNQQVRERTIARLKSGGLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L LV++ ++ ++ E+ +HR GRTGRAGRKG ++       +R  + + R   
Sbjct: 314 ARGLDVERLSLVVNYDIPTDTESYVHRIGRTGRAGRKGKAILFAAPRERRLLKAIERATR 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAA 418
             +     PS + + +       +    L  ++ ++      L  +       D   ++A
Sbjct: 374 QEITIMDLPSRDEVTKTRIANFQKQ--LLSVVESEDLTFYRTLFEEIENNTDIDHLDLSA 431

Query: 419 GFLRIHRAGLCA---PEEITPVSLVSGRDRFR------------------DDSRAFKVGG 457
             L + +         E+       +   R                    D  R  +   
Sbjct: 432 ALLYLAQKEKPLQPVEEKFVEPRPNTSNPREERGRRDRNDRNDRGRTERSDRGRPERSEQ 491

Query: 458 GSRDNFKGS-------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
           G                 + + VG     + + ++  +   + IN + IG I++  D + 
Sbjct: 492 GGDKPRGRGRPTDVELEVYRIDVGRSHGVQVKNIVGAIANEADINSRFIGDIKLSDDYST 551

Query: 511 VEV----SADGVDLLRRTVKLDKGIQLK 534
           +E+     A+ +  L       + + +K
Sbjct: 552 IELPKGMPAETLKHLENVYVCKRQLNIK 579


>gi|261212543|ref|ZP_05926828.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
 gi|260838474|gb|EEX65130.1| cold-shock DEAD-box protein A [Vibrio sp. RC341]
          Length = 639

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 162/555 (29%), Positives = 274/555 (49%), Gaps = 19/555 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPETAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++ Q+          E+  ++V+ L A  + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATTLAAILL 426

Query: 422 R-------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +       +   G     E         R+R   D  A +  GG          + L VG
Sbjct: 427 KRQQGKRPLFYVGADPMIEAMEREKSRRRERRDGDRPARREFGGRDQENHDWDTYQLQVG 486

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
             Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  + I+ K
Sbjct: 487 RDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRKLR-IRQK 545

Query: 535 YLGGEKPDFRGYKSS 549
            +G    DF  ++ S
Sbjct: 546 EVGAVVCDFDDFRES 560


>gi|88808892|ref|ZP_01124401.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
 gi|88786834|gb|EAR17992.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7805]
          Length = 607

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 149/547 (27%), Positives = 263/547 (48%), Gaps = 25/547 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   L E+GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L   +
Sbjct: 64  FSEALLRTLEEKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLEGRS 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 124 SK------PRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHTLKRGV 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y ++   + I +++R+   I  R++ +  S +  A+  +L     +
Sbjct: 238 SATMPNEIRRLSKRYLQEPAEITIKTKDREAKRIRQRSITMQNSHKIEALNRVLEAVTGE 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L      V  L+G++ Q +R   +  +R G   + +ATDVAA
Sbjct: 298 GVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R  N 
Sbjct: 358 RGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQ 417

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-------AKHDPEKIAA 418
           S+     PS   I +    R+          + D++  +   L        +   +++A 
Sbjct: 418 SIEPMDIPSNAEINQSRLDRLRNRLSEAAVCEADDETPLLQELIQRVAQEHELSADQLAL 477

Query: 419 GFLR-------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             LR       +  +G  +  +    +      R        +    +R      + + +
Sbjct: 478 AALRLVVGDQPLLVSGDESWLQAPVRTERRDDRRGDRGRDRRRPERDARPPEDNMTRYRV 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKL 527
            VG + + +   L+  +   SG+  + IG I++    + V++      D  D L+R   L
Sbjct: 538 EVGHRDRVKPGNLVGAIANESGLQGRMIGRIQIFESHSLVDLPKGMPDDVFDSLQRLKVL 597

Query: 528 DKGIQLK 534
           ++ +Q+ 
Sbjct: 598 NRELQIT 604


>gi|323343824|ref|ZP_08084051.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323095643|gb|EFZ38217.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 626

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 160/579 (27%), Positives = 269/579 (46%), Gaps = 21/579 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A++E G+     VQ+ ++   L    DV+  AQTG+GKT A+G+ 
Sbjct: 1   MKTFEELGVSEEIRRAITELGFETPMPVQQEVIPYLLGNGNDVVALAQTGTGKTAAYGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +       +      AL ++PTREL +Q+  +L         +  V   GG S+  
Sbjct: 61  ILQKID------TSKKETQALVLSPTRELCLQIADDLNDFSKYINGLHVVAVYGGTSIEA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ G  I+V TPGRL D +      +  +  VVLDEADEML++GF + I  I +  
Sbjct: 115 QIRTIKRGVQIIVATPGRLIDLMHRGVAKLDSVANVVLDEADEMLNMGFSESINEIFEGI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  I  +A+NY  DA  + + S N     +++   +V   D+  A+ 
Sbjct: 175 PQDRNTLLFSATMSKEIEKIAQNYLHDAKEIVVGSRNEGAESVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC T+         L    +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDYYPHIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRQHMTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVEDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + +      V    P+ + I  +   + + + L +D  + +       ++      D 
Sbjct: 355 RAIEKVIGKQFVEGVMPTAKEICTKQLYKTMDEILKIDVNEEEIAPFMADINRHFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAP----EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           E I    + +      A      EI   S   G +R     R    G  S     G    
Sbjct: 415 EDIIKKIVSLEFGKFLAYYADAPEIEKPSTKKGGERATKGERRGTRGSRSHKAEAGYRRL 474

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD- 528
            +++G         +M  + ++    RQ IG I +    +++EV     + + R +    
Sbjct: 475 FINLGKADGFYPGEIMQFVNKNMR-GRQEIGHIDLLSKFSYIEVPEADANKVMRALSGTT 533

Query: 529 -KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
            KG +++    ++   RG  +   + +N+  G  ++F++
Sbjct: 534 YKGREVRCNDADEKG-RGAAAVRGRKRNNDKGGFEKFEK 571


>gi|219851679|ref|YP_002466111.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
 gi|219545938|gb|ACL16388.1| DEAD/DEAH box helicase domain protein [Methanosphaerula palustris
           E1-9c]
          Length = 550

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 155/532 (29%), Positives = 250/532 (46%), Gaps = 30/532 (5%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   I + I  A+ + G+   T +Q+  +    +  DV+  AQTG+GKT AFG+     
Sbjct: 29  FEALGISKEIQRAIVDLGFEEPTPIQQMAIPLIHQGFDVIGQAQTGTGKTAAFGIPTLEK 88

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +   +          AL ++PTREL +Q+  EL  L      +  +   GG  + R+   
Sbjct: 89  IDPLDKHV------QALILSPTRELTIQIAEELSKLARYRRGIAILPIYGGQPIERQFDA 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V+GTPGR+ DH+R   L   H+K VVLDEADEMLD+GFRDDIE IL ++P  R
Sbjct: 143 LRRGVQVVIGTPGRVMDHMRRGTLVFDHVKTVVLDEADEMLDMGFRDDIELILKTTPSDR 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT+S  I  L K +QK    V +  +    + ++     V  S +  A+  +L 
Sbjct: 203 QTTLFSATMSQPILELTKRFQKSPKMVKVTHKELTVAAVEQIYYEVRESLKLEALARLLD 262

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  ++FC+T+  V      L    +   AL G+L Q +R   +   R G   + +A
Sbjct: 263 IYNPKLTLIFCNTKRRVDELVGQLQVRGYAAEALHGDLKQSQRDRVMGRFRSGGIDILVA 322

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR G +   +      +   + 
Sbjct: 323 TDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGRTGRAFTFVSGKEIWKIRDIQ 382

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIA 417
           R  N  V+    P++  + E      +     +    G EK    +  ++   +    IA
Sbjct: 383 RYTNTRVIQAQVPTLSDVEEIRTTLFIDKVKTIVDAGGLEKYVSMIEKLMRDDYASLDIA 442

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L++                    +R   +  A +    +     G   F L+VG   
Sbjct: 443 AALLKMRM------------------ERDTKEETAAEPDFKNTGAEAGMVRFFLNVGRNH 484

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              A+ ++  +   +GI  +SIGAI +    +FVEV  +    + + +  ++
Sbjct: 485 NVRAKDILGAIAGETGIPGKSIGAINIFDSYSFVEVPLEHAKTVYQIMNKNQ 536


>gi|281424769|ref|ZP_06255682.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401139|gb|EFB31970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 625

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 278/590 (47%), Gaps = 24/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   + A+N       A  A+ ++PTREL VQ+  +L+       G+ +    GG  +  
Sbjct: 61  LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  IVV TPGRL D I    + ++ +  VVLDEADEML++GF D I  I +  
Sbjct: 115 QIRTIKHGVQIVVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ ++     +    P  E I ++   +++ D +  D  +      +D ++ +    D 
Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414

Query: 414 EKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGS 466
           E I    +     R       APE   P++    R    D S   K   G        G 
Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +++G         +M  L +     RQ +G I +    +++EV  +    + + + 
Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEVPENDAQKVMKALN 533

Query: 527 LD--KGIQLK-YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               KG +++     E    R  K  G   K+S+ G   R    +   + 
Sbjct: 534 GTSYKGREVRCNDADEDGHGRAGKRGGRSEKSSRGGRQSRNNNERPQRRQ 583


>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
 gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
          Length = 534

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 156/538 (28%), Positives = 251/538 (46%), Gaps = 26/538 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL + G+     VQ   +   L  +D +V A TG+GKT AF L +   L    
Sbjct: 19  LSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQGL---- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL + PTRELA+QV   +  L       V    GG  + R+ R L++   
Sbjct: 75  --VPYGHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRHPVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ DH+R + L +  ++ V+LDEADEMLD+GF +D+E+IL+  P++R+  +FS
Sbjct: 133 VIVGTPGRIMDHLRRETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI P I  L + Y +  V + I  E      I      VA   +  A+  IL Y    +
Sbjct: 193 ATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRILDYEAPTS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T++        L    +   A+ G+LSQ  R  A+Q  R G+  + IATDVAAR
Sbjct: 253 AIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIATDVAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P +  VI+ ++ S+PE+ +HR GRTGRAG  G ++ +I    +     + R     
Sbjct: 313 GLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLIEPRERWLLRTIERAIGQR 372

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++ +  P+ E I  R  QR L      + I+  + ++   ++ +  P+  A         
Sbjct: 373 LIPKRIPTREEIARR--QRELLGASLSEVIEQRDLELGRRIVDQLLPDHDAVDIAAAAVL 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            L     ++P       +R  D +   +          G     L +G +       ++ 
Sbjct: 431 LLLEARNVSP-------ERAGDLTEIER-------AEPGMVRLRLELGRRDGIRPSDIVG 476

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL----LRRTVKLDKGIQLKYLGGEK 540
            +   +GI  + IG I +    T V+V     D     L RT    + + ++ L   +
Sbjct: 477 AIANEAGIPGKEIGQIEIADRYTLVDVPQRAADRVVAALSRTRLRGRAVVVRRLDSTR 534


>gi|331092062|ref|ZP_08340893.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402263|gb|EGG81834.1| hypothetical protein HMPREF9477_01536 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 528

 Score =  294 bits (752), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 155/536 (28%), Positives = 262/536 (48%), Gaps = 43/536 (8%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     I +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L   
Sbjct: 6   FEQLGICPEIQKAVKYMGFEEASPIQAKAIPVILEGKDIIGQAQTGTGKTAAFGIPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N +         + + PTRELA+QV  E+  L      +  +   GG  + ++ R 
Sbjct: 66  VNPKNKK------LQGIVLCPTRELAIQVADEIRNLAKYMHGIKVLPIYGGQEIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  I++GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIE IL+  P++R
Sbjct: 120 LKNGTQIIIGTPGRVMDHMRRKTIKMEQVHTVVLDEADEMLNMGFREDIETILEGVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  AI  + K +QK A  + +  +     +I+     V   +++  +  +L 
Sbjct: 180 QTVLFSATMPKAIMEITKKFQKKAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVLARLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K ++VFC+T+  V      L    +    L G++ Q +R   +Q  R G+  + +A
Sbjct: 240 IYTPKLSVVFCNTKKQVDLLVTSLLGRGYFAAGLHGDMKQVQRDRVMQGFRSGKTDILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + 
Sbjct: 300 TDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVSGKEVYKLKEIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDP----------LFLDSIQGDEKKMVDVLLAK 410
           R     +  +  PS+  +     + IL D           L +++IQ        V  + 
Sbjct: 360 RYCKTKIYAQKVPSLNDVATTKMENILDDIDQIIVNEDLTLMINAIQE------RVNDSD 413

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +    +AA FL++   G+ + EE   +                   G +     G     
Sbjct: 414 YTAMDMAAAFLKMC-TGMTSEEEQEEMDF-----------------GDTGAEEPGMVRLF 455

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +++G KQKA+   ++  L   +G+  + IG I +    TFVEV  +    +   +K
Sbjct: 456 INIGKKQKAKPGDILGALAGETGMPGKLIGTIDMFDKYTFVEVPREYAKDVLLAMK 511


>gi|225390528|ref|ZP_03760252.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
 gi|225043410|gb|EEG53656.1| hypothetical protein CLOSTASPAR_04283 [Clostridium asparagiforme
           DSM 15981]
          Length = 595

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 154/574 (26%), Positives = 275/574 (47%), Gaps = 43/574 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   + + I  A++E G+   + +Q   +   +  +D++  AQTG+GKT AFG+ L
Sbjct: 31  MK-FDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGIPL 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  +           A+ + PTRELA+QV  E+  L      +  +   GG  + ++
Sbjct: 90  LQKVDPK------VKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQ 143

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L++G  +++GTPGR+ DH+R K + + ++  VVLDEADEML++GF +D+E IL   P
Sbjct: 144 IRSLKDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLP 203

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ LMFSAT+ PAI  +A+ +QK+ V V +  +      +      V   ++   +  
Sbjct: 204 EERQTLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPKNKVEVMCR 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  K +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  +
Sbjct: 264 LLDLYAPKLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDI 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +  
Sbjct: 324 LVATDVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLR 383

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-----DVLLAKHD 412
            + R     ++ +  PS+  I E   ++IL     + +   D  KMV      ++  ++ 
Sbjct: 384 DIQRYCKTRIIPQAIPSLNDITEIKVEKILDQVEEVMN-DSDLSKMVGIIEKKLMEEEYT 442

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS------------- 459
              +AA  L+++  G  + + I         D      R F  G G              
Sbjct: 443 SLDLAAALLKMNM-GEDSEDIIECSEPARSLDDLDRYGRDFNRGRGRTTGGNRSRRKGAT 501

Query: 460 ---------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF 510
                      +    +   +++G  Q+     ++  +   SG+  + +G+I +    TF
Sbjct: 502 DRAAIDYIVEGDGDDMARLFINIGKAQRVTPGDILGAVAGESGMPGRLVGSIDMYDGYTF 561

Query: 511 VEVSADGVDLLRRTV----KLDKGIQLKYLGGEK 540
           V+V     D + + +       + I ++   G +
Sbjct: 562 VDVPVRYADEVLKAMGHARIKGRNIHVEKANGRR 595


>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 595

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 161/594 (27%), Positives = 263/594 (44%), Gaps = 32/594 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + + +A+ + G+   + +Q   +   L   D    AQTG+GKT AFGL +  
Sbjct: 4   SFEELGLSRELLKAVEDMGFEEPSPIQVLAVPCLLAGNDAFGQAQTGTGKTAAFGLPIL- 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
                 D+ +P     AL + PTRELA+QV  EL  L A    V  +   GG  + R+ R
Sbjct: 63  ------DKLTPERNTQALILCPTRELAIQVAEELNKLAAHKRGVAILPIYGGQPIERQLR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +VVGTPGR+ DH++   L +S     VLDEADEMLD+GFR+DIE IL+ +P  
Sbjct: 117 ALAKGVQVVVGTPGRVMDHLKRGTLRLSQASMAVLDEADEMLDMGFREDIEAILEQTPAS 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+ PAI  L+K + ++   + +A +      I+     V    + +A+  +L
Sbjct: 177 CQRVLFSATVPPAIRELSKRFLREPEMLTVAQKMLTVPAIEQIYYEVRPHQKMDALCRLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VFCST+      T  L +  +Q  +L G L+Q +R   +Q  R     V +
Sbjct: 237 DSRAFHKALVFCSTKRGADEVTTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D++ VI+ ++  + E  +HR GRTGRAGR G +   +      +   +
Sbjct: 297 ATDVAARGLDVDDVDAVINYDIPHDVEKYVHRIGRTGRAGRVGSAFTFVTMREHYKMRDI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK--------MVDVLLAKH 411
            R     +     PS+  +      R+L +          E+                + 
Sbjct: 357 IRCTRARITEGRLPSLRDVDNIRTSRLLDEVRQTVESGTLERWLTLVEDFLATQFPDGEI 416

Query: 412 DPEKIAAGFLRIHRAGLC----APEEITPVSLVSGRDRFRDDSRAFKVGGG-------SR 460
               ++A   ++           P +  P++L   R     D    +   G        R
Sbjct: 417 TSRDVSAALFKLLMQRDFGDQDKPLDQDPLALEPRRQYKDRDGAPGRREPGKPGARPQRR 476

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
           +N    +   L+VG   KA  R L+  +   +GI+ + IGAI +  +   VE++ +  D 
Sbjct: 477 ENDGPMTRLHLNVGHTHKATPRELVGAITGETGISSRHIGAISINKNFCVVEIAQEMADD 536

Query: 521 LRRTVKLD---KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +   +       G+++                 F     +    K  K+ +   
Sbjct: 537 VLAVLNRGVFIAGMRVAAKVDSGKPAYPRPRKPFAPGPRRQAPGKYGKKGRNGP 590


>gi|148239847|ref|YP_001225234.1| superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
 gi|147848386|emb|CAK23937.1| Superfamily II DNA/RNA helicase [Synechococcus sp. WH 7803]
          Length = 606

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 150/547 (27%), Positives = 270/547 (49%), Gaps = 25/547 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L  +GY   + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 64  FSEALLKTLDAKGYKEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLD--- 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                ++ P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 121 ---GRSNTPRVLVLAPTRELAMQVADSFKAYAAGHPHLNVLAIYGGSDFRSQIHALKRGV 177

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 178 DVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y ++   + I +++R+   I  R++ +  + +  A+  +L     +
Sbjct: 238 SATMPNEIRRLSKRYLREPAEITIKTKDREAKRIRQRSITLQNAHKIEALNRVLEAVTGE 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L      V  L+G++ Q +R   +  +R G   + +ATDVAA
Sbjct: 298 GVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVDRLRKGTVNILVATDVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R  N 
Sbjct: 358 RGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVTPRERRFVGNLERAVNQ 417

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-------AKHDPEKIAA 418
           S+     PS   I +    R+        + + +++  +   L        +   +++A 
Sbjct: 418 SIEPMDIPSNAEINQSRLDRLRDRLSQAAACEANDETSLLQELIQRVGQEHELTADQLAL 477

Query: 419 GFLRIH---RAGLCAPEE---ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG-SSWFSL 471
             +++    +  L + +E    TP+      DR  D  R  +         +   + + +
Sbjct: 478 AAMKLAVGDQPLLVSGDESWLQTPLRNDRRDDRRGDRGRDRRRPDREARPPEDNMTRYRV 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKL 527
            VG + + +   L+  +   SG+  + IG I++    +FV++      D  + LRR   L
Sbjct: 538 EVGHRDRVKPGNLVGAIANESGLQGRMIGRIQIFESHSFVDLPKGMPEDVFNALRRLKVL 597

Query: 528 DKGIQLK 534
           ++ +Q+ 
Sbjct: 598 NRELQIT 604


>gi|260770312|ref|ZP_05879245.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
 gi|260615650|gb|EEX40836.1| cold-shock DEAD-box protein A [Vibrio furnissii CIP 102972]
          Length = 632

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 168/613 (27%), Positives = 286/613 (46%), Gaps = 55/613 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKLDLNQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L++      VLDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAGF 420
           S+     P  + + E    ++  + L  +      +K  +++       + D   +AA  
Sbjct: 367 SMEEIQLPHRDKVAEARLSQLAIE-LEAEKEHASLEKFAELVEKLQVSLEIDANTLAAIL 425

Query: 421 LRIHRAGLC-APEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           L+  +           P+     RD+      R++    + G            + L VG
Sbjct: 426 LKRQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRTVKLDKGIQL 533
             Q  + + ++  L    G+ + SIGAI++    TFV++      D+  +  KL   I+ 
Sbjct: 486 RDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL--RIRQ 543

Query: 534 KYLGGEKPDFRGYKSS---------------------------------GFKSKNSQDGA 560
           K +G    DF  ++ S                                 G +   S++G 
Sbjct: 544 KEVGAVVCDFDDFRESRGRRDGGNRRDGGFRGNREGGNREGGRREGGFRGNREGGSREGG 603

Query: 561 TKRFKRFKGASKN 573
            +RF R +G    
Sbjct: 604 ERRFDRNRGGDNR 616


>gi|315181381|gb|ADT88294.1| ATP-dependent RNA helicase DeaD [Vibrio furnissii NCTC 11218]
          Length = 632

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 168/613 (27%), Positives = 286/613 (46%), Gaps = 55/613 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTDMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKLDLNQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L++      VLDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLISRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  +   + +D  RV++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKDIVDRFLRDPARVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAGF 420
           S+     P  + + E    ++  + L  +      +K  +++       + D   +AA  
Sbjct: 367 SMEEIQLPHRDKVAEARLSQLAIE-LEAEKEHASLEKFAELVEKLQASLEIDANTLAAIL 425

Query: 421 LRIHRAGLC-APEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           L+  +           P+     RD+      R++    + G            + L VG
Sbjct: 426 LKRQQGKRPLFYVGEDPMIEAVERDKQRRRERRENGGDRRDGRREYTANTDWETYQLQVG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRTVKLDKGIQL 533
             Q  + + ++  L    G+ + SIGAI++    TFV++      D+  +  KL   I+ 
Sbjct: 486 RDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMSADVTGKLRKL--RIRQ 543

Query: 534 KYLGGEKPDFRGYKSS---------------------------------GFKSKNSQDGA 560
           K +G    DF  ++ S                                 G +   S++G 
Sbjct: 544 KEVGAVVCDFDDFRESRGRRDGGNRRDGGFRGNREGGNREGGRREGGFRGNREGGSREGG 603

Query: 561 TKRFKRFKGASKN 573
            +RF R +G    
Sbjct: 604 ERRFDRNRGGDNR 616


>gi|299142021|ref|ZP_07035155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
 gi|298576483|gb|EFI48355.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           C735]
          Length = 625

 Score =  294 bits (751), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 172/590 (29%), Positives = 279/590 (47%), Gaps = 24/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   + A+N       A  A+ ++PTREL VQ+  +L+       G+ +    GG  +  
Sbjct: 61  LLQKVDAQN------RATQAIVLSPTRELCVQIADDLKDFSKYINGMNIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  I+V TPGRL D I    + ++ +  VVLDEADEML++GF D I  I +  
Sbjct: 115 QIRTIKHGVQIIVATPGRLVDLINRGVMELNQVNNVVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHVKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ ++     +    P  E I ++   +++ D +  D  +      +D ++ +    D 
Sbjct: 355 RQIEKQIGKDFIDGELPKPEEICKKQLYKVMDDIMKTDVDEDQIAPYMDDIMRQFEYVDK 414

Query: 414 EKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK--VGGGSRDNFKGS 466
           E I    +     R       APE   P++    R    D S   K   G        G 
Sbjct: 415 EDIIKKMVTVTFGRFLDYYKHAPEIEKPMAGKGSRSERGDRSMRGKVSSGRRQHVAESGY 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +++G         +M  L +     RQ +G I +    +++EV  +    + + + 
Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEVPENDAQKVMKALN 533

Query: 527 LD--KGIQLK-YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               KG +++     E    R  K SG   K+S+ G   R    +   + 
Sbjct: 534 GTSYKGREVRCNDADEDGHGRAGKRSGRSEKSSRGGRQSRNNNERPQRRQ 583


>gi|167757993|ref|ZP_02430120.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
 gi|167664425|gb|EDS08555.1| hypothetical protein CLOSCI_00330 [Clostridium scindens ATCC 35704]
          Length = 526

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 144/533 (27%), Positives = 260/533 (48%), Gaps = 33/533 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I +A+   G+   + +Q   +   L  KD++  AQTG+GKT AFG+ L   
Sbjct: 6   FEDLGLCPEIMKAVKNMGFEEASPIQAKAIPAMLEGKDIIGQAQTGTGKTAAFGIPLLEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +N +        A+ + PTRELA+QV  E+  L      +  +   GG  + ++ R 
Sbjct: 66  IDPKNKK------LQAIVLCPTRELAIQVAEEIRNLAKYMHAIKVLPIYGGQEIVKQIRS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++GTPGR+ DH+R K + + ++  VVLDEADEML++GFR+DIE IL+  P++R
Sbjct: 120 LKSGTQLIIGTPGRVMDHMRRKTVKMENVHTVVLDEADEMLNMGFREDIETILEGVPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I  + K +QK+A  + +  +     +I+     V   +++  +  +L 
Sbjct: 180 QTVLFSATMPKPILDITKRFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVLSRLLD 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K +++FC+T+  V      L    +    L G++ Q +R   +   R G+  + +A
Sbjct: 240 IYNPKLSVIFCNTKKQVDLLVNGLLGRGYFAAGLHGDMKQAQRDRVMDGFRKGKTEILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      + + + 
Sbjct: 300 TDVAARGIDVEEVEAVFNYDLPQDDEYYVHRIGRTGRAGRVGRSFSFVTGKEVYKLKEIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKK-MVDVLLAKHDPEKI 416
           R     +  +  PS++ +      ++++     +  + +    +    +V  + +    I
Sbjct: 360 RYCKTKIYAQKVPSLDDVANTKMDKLMETINRIIEEEDLTTYFQMIQAEVNDSDYTSMDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L++           +      G D F D          +     G     +++G K
Sbjct: 420 AAALLKL----------CSGTKEEDGEDMFED----------TGAEEPGMVRLFINIGKK 459

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            KA+   ++  L   SG+  + +G I +    TFVEV  +    +   +   K
Sbjct: 460 HKAKPGDILGALAGESGLPGKVVGTIDMYDKYTFVEVPREYARDILNAMDHAK 512


>gi|87124726|ref|ZP_01080574.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
 gi|86167605|gb|EAQ68864.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9917]
          Length = 603

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 152/554 (27%), Positives = 260/554 (46%), Gaps = 31/554 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   L+ +GY   + +Q A     +  +D++  AQTG+GKT AF L L   L  E 
Sbjct: 50  FSEALLRTLASKGYQAPSPIQRAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQPEG 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 110 P------GPQVLVLAPTRELAMQVAESFKAYAAGHPHLNVLAIYGGSDFRSQIHSLKRGV 163

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   LN SHL+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 164 DVVVGTPGRVMDHMRQGTLNTSHLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLF 223

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y ++   + I ++ ++   I  R + +  S +  A+  +L     +
Sbjct: 224 SATMPAEIRRLSKRYLREPAEITIKTQEKEARRIRQRCITLQNSHKLEALNRVLEAVTGE 283

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A     ++ L      V  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 284 GVIIFARTKAITLTVSENLEATGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAA 343

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R    
Sbjct: 344 RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNLERATGQ 403

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF-LRIH 424
            +     PS   I +     + Q    + +  G E++  +  L +   +++A    L + 
Sbjct: 404 PIEPMQIPSNAEINQARLDNLRQKLTAVATGDGAERQADEGPLLQELLQRVAQEHSLSME 463

Query: 425 RAGLCAPEEITPVSL-----------VSGRDRFRDDS------------RAFKVGGGSRD 461
           +  L A                     + R R R+D                +    SR 
Sbjct: 464 QLALAALTLAVGDQPLLVQGDESWLQNANRGRTREDRLGSRGGDRGDRGDRRRQERPSRP 523

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                  F + VG + + +   L+  +   SG+  + IG I++    T V++       +
Sbjct: 524 PEDNMERFRVEVGHRDRVKPGNLVGAIANESGLQGRMIGRIQIFESHTLVDLPKGMPQDV 583

Query: 522 RRTVKLDKGIQLKY 535
            +++K  K +  + 
Sbjct: 584 FQSLKHLKVMNREL 597


>gi|226325568|ref|ZP_03801086.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
 gi|225206051|gb|EEG88405.1| hypothetical protein COPCOM_03373 [Coprococcus comes ATCC 27758]
          Length = 531

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/537 (27%), Positives = 261/537 (48%), Gaps = 34/537 (6%)

Query: 1   MKI--FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE   + + I +A+   G+   + +Q   +   +   D++  AQTG+GKT AFG+
Sbjct: 1   METVRFEEMGLSEEIQKAVRYMGFEEASPIQAKAIPAMISGIDLIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            L   +  +  +        A+ + PTRELA+QV  E+  L      +  +   GG  + 
Sbjct: 61  PLLEKVDPKLKK------LQAIVLCPTRELAIQVADEIRNLSRYMHGIKVLPIYGGQDIV 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L++G  IV+GTPGR+ DH+R K + +  +  VVLDEADEML++GFR+DIEF+L  
Sbjct: 115 KQIRSLKSGTQIVIGTPGRVMDHMRRKTMKLDFVHTVVLDEADEMLNMGFREDIEFVLSG 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ ++FSAT+   I  + K +Q +A  + +  +     +I+     V    ++  +
Sbjct: 175 VPEERQTVLFSATMPKPIMEITKKFQNNAKVIKVTKKELTVPNIEQYYYDVKPKKKEEVL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  + ++VFC+T+  V      L    +    L G++ Q++R   +Q  R G+ 
Sbjct: 235 SRLLDIYSPRLSVVFCNTKKQVDLLVNALLGRGYFAAGLHGDMKQEQRDRVMQGFRTGKT 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR+G +   +      +
Sbjct: 295 EILVATDVAARGIDVDEVEAVFNYDLPQDDEYYVHRIGRTGRAGREGRAFSFVSGKEVYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA------ 409
            + + R     +  +  PS+  +     + IL D   +  I+ ++  M+   +       
Sbjct: 355 LKEIQRYCKTKIYAQKVPSLNDVANTKMENILDDVERV--IEQEDLDMMINAIEERVNNS 412

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +     +AA FL+I                   ++   +D      G G      G    
Sbjct: 413 EFTAMDMAAAFLKICCG-----------MTEDNKNTEENDWEFGDTGAGED----GMVRL 457

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            +++G KQ+     ++  +   SG++ + IG I +    TFVEV  +    +   +K
Sbjct: 458 FINIGKKQRVRPGDILGAIAGESGMDGKLIGTIDMYDKYTFVEVPREYAREVLNAMK 514


>gi|220918339|ref|YP_002493643.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956193|gb|ACL66577.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 565

 Score =  293 bits (750), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 238/568 (41%), Positives = 336/568 (59%), Gaps = 13/568 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVA+GL L  
Sbjct: 2   TFTELGAHPALARALERRGYTEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGG 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +LL +   F PA AP  L +APTRELA+QV REL WL A+    V  C+GG+   RE R 
Sbjct: 62  SLLGDAPAFGPAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+VVGTPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ R
Sbjct: 122 LSDGAHLVVGTPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++FSAT+   I  LA+ Y  D  RV        H+DI YRA +VA S+R+ A+VN+LR
Sbjct: 182 RTILFSATLPKPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +A
Sbjct: 242 ALEPPRALVFRATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLP L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ 
Sbjct: 302 TDVAARGLDLPGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERML 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           R+A V V W P P+ EAIR  D  R+  +     +    DE+     LL+  DP  +AA 
Sbjct: 362 RDAGVRVEWAPVPAAEAIRASDEARLAGEVDALSEDATDDERAAAARLLSGRDPVLVAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +R  RA L +PE++      + +       RA + G  +       +WF +++G ++KA
Sbjct: 422 LVRSTRARLPSPEDLPETVHAARQAPSPRGERAPRRGPPAEV-----AWFRINLGREKKA 476

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK----GIQLKY 535
           + +WL+P+LCR  G+ R  IG I +    T  EV+         T +       G++++ 
Sbjct: 477 DPKWLLPLLCRRGGVTRDEIGKIVIGATETRFEVARAAAARFGATARRPDPRAPGVRIEP 536

Query: 536 LGG-EKPDFRGYKSSGFKSKNSQDGATK 562
           +     P      + G ++  ++   T+
Sbjct: 537 VRETRSPGEHRAHAGGERAPRARRPVTR 564


>gi|262201927|ref|YP_003273135.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262085274|gb|ACY21242.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 597

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 153/553 (27%), Positives = 256/553 (46%), Gaps = 16/553 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  A+S+ GY   + +Q A + P +  +DV+  AQTG+GKT AF + + S
Sbjct: 18  TFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDVVGLAQTGTGKTAAFAIPILS 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            L    D   P   P AL +APTRELA+QV      +      V V    GG S   +  
Sbjct: 78  RLEGAGDGSGPRK-PQALVLAPTRELALQVAEAFGRYSAHMPEVRVLPIYGGQSYGVQLA 136

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA ++VGTPGR+ DH+    L+IS L+ +VLDEADEML +GF +D+E IL  +P  
Sbjct: 137 GLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEMLTMGFAEDVERILAETPDD 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  LA+ Y  D   + + S+     +I  R + V+   + +A+   L
Sbjct: 197 KQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNITQRYLQVSHQRKLDALTRFL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+ +     + L    F  VA++G+++Q +R   +  ++ G   + +
Sbjct: 257 EVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQAQRERTINQLKSGGIDILV 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 317 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGNALLFVSPRERHLLRSI 376

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R    ++     PSVE +  +   R        +++  D   M   L+  +  +   A 
Sbjct: 377 ERATRSTLTEIGLPSVEDVNAQRVARFADS--ITENLSSDNLDMFRQLIENYARDNDVAM 434

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                   L   +    ++                   G        + + ++VG K K 
Sbjct: 435 ADIAAALALETRDGGFLMAPDPPEGDRPPRRERAPRRAGGS-----FATYRIAVGRKHKV 489

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQLKY 535
               ++  +    G+ R   G I ++ D + VE+  D     +  LR T      I ++ 
Sbjct: 490 SPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDDLDNETLSALRDTRIGRNPIDIRR 549

Query: 536 LGGEKPDFRGYKS 548
             G  P  RG   
Sbjct: 550 DLGA-PRARGGAK 561


>gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 739

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 154/625 (24%), Positives = 268/625 (42%), Gaps = 60/625 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EA+   GY   + +Q   +   L+  ++L +AQTG+GKT AF L L S
Sbjct: 62  TFDDLGLSPEVLEAVKLAGYETPSPIQAKAIPALLQGANLLGTAQTGTGKTAAFSLPLLS 121

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       S       L + PTRELA+QV   ++    K   V  V   GG  +  + R
Sbjct: 122 RINFNGRETS------MLVLTPTRELAIQVSDAIQQYAVKMQNVTVVPVYGGQDIAIQLR 175

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+  A IVV TPGRL DHI+   +++  +KA+VLDEADEMLD+GF +D+E IL   P  
Sbjct: 176 ALKRKASIVVATPGRLIDHIKRGSISLGAVKAIVLDEADEMLDMGFMEDVETILKEIPAD 235

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  ++  +   +  +     I  +     +I  R +LV    +  A+  +L
Sbjct: 236 AQRALFSATMPDSVKKIIDQHLGEYEEARIEGKTTTVENICQRYLLVKNEHKIEALARVL 295

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F  T+ + +   + L    F V  L+G+L+Q  R   +  ++ G+  + +
Sbjct: 296 EGEEFDGVLIFVRTKQNTTEVAEKLESRGFNVAPLNGDLAQSMRERTINRLKMGKLDIVV 355

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  + LV++ ++  + E+ +HR GRTGRAGR G ++  I    +R  + +
Sbjct: 356 ATDVAARGIDVDRISLVVNYDIPYDTESYVHRIGRTGRAGRSGNAILFITPREKRMLKTI 415

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---------------LQDPLFLDSIQGDEKKM- 403
            +     +     P+ E I ++                     ++ +   + +G   K  
Sbjct: 416 EKATRQPIDVMEMPTSEQISKKRVDAFKAKVKSVVSYGELDQFKELVRALAAEGCNMKDG 475

Query: 404 ---VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF------- 453
               D  + +   E IAA  +++++        + P+     R       R F       
Sbjct: 476 VALEDGSVNEMTAEDIAAAVIKMYQKKQPLFPNLPPLEAPKERREKVRTGRDFLGESRNE 535

Query: 454 --------------KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499
                         +   G     +G   + L VG       R ++  +   + IN  +I
Sbjct: 536 DFGLNSEEQKRMRKERKEGLNGVEEGFLRYYLGVGRIDHVTPRDIVGAIAGEANINSSNI 595

Query: 500 GAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK- 554
           G I++    + VE    +  D +D+L          + + +  E P+     +    S+ 
Sbjct: 596 GRIKLFDKFSTVELPNTLPQDVLDILSEMTIRGNDARFRVMTDEPPEGPAPGTRPHASRE 655

Query: 555 ------NSQDGATKRFKRFKGASKN 573
                   + G     +R  G  KN
Sbjct: 656 ERRSFHRDRKGGFHDDERRGGFRKN 680


>gi|72161844|ref|YP_289501.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71915576|gb|AAZ55478.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 562

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 155/536 (28%), Positives = 257/536 (47%), Gaps = 22/536 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL+E GY   T++Q   +   L  +D+L  A TG+GKT AF L +   L    
Sbjct: 17  LRPELLDALAEVGYEEPTAIQREAIPSLLEGRDLLGQAATGTGKTAAFSLPILHRL---- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL + PTRELA+QV   L          +    GG  + R+ R L+ G  
Sbjct: 73  PDSDRGDTPSALILVPTRELALQVSEALHRYGRHLKARILPIYGGQPIGRQLRALERGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DHI    L +  ++ VVLDEADEMLD+GF +DIE I++  P+ R+ ++FS
Sbjct: 133 VVVATPGRALDHIGRGTLVLDTVRTVVLDEADEMLDMGFAEDIEAIIEEVPENRQTVLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  +A+ +  D VRV I   +    +   +   A +VA   +  A+  +L    
Sbjct: 193 ATMPDRIEGIARRHLTDPVRVRIARTSPAPGEEPKVRQNAYIVARPYKPAALGRVLDMES 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VFC TR  V + T+ L    ++  AL G +SQ++R   +  +R G A + IATDV
Sbjct: 253 PTAALVFCRTREEVDQLTETLNARGYRAEALHGGMSQEQRDRVMARLRGGTADLLIATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++  + S  E  +HR GR GRAGR+G+++ ++     R  + + R  
Sbjct: 313 AARGLDIEHLTHVVNYNVPSATETYVHRIGRVGRAGREGVAITLVEPREHRMLKTIQRST 372

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDPEKIA 417
           +  +  E  P+V  +R R  +  L      ++++ ++      + +V+ L  + D  +IA
Sbjct: 373 SGPISVEKLPTVADLRARRVE--LTRAALHEALKEEDDDREAFRVVVESLAEEFDIMEIA 430

Query: 418 AGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              +++              PE +        R+R        +     R    G +   
Sbjct: 431 LAAVKLAHEASGAVTEEEEIPEPVLRPERSERRERRGRRGGPGRGERRGRGPSDGMTRLF 490

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           + +G   +   + L+  +   + ++ + IGAI +    + VEV     D +   +K
Sbjct: 491 VGIGRNARVRPQDLVGAIAGETALSGRDIGAIEIADRFSLVEVPESTADGVIAALK 546


>gi|118470234|ref|YP_889292.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171521|gb|ABK72417.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 581

 Score =  293 bits (749), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 160/565 (28%), Positives = 266/565 (47%), Gaps = 18/565 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+++ GY + +++Q A + P L   DV+  AQTG+GKT AF + + S
Sbjct: 22  TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILS 81

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       +      AL +APTRELA+QV        +    V  +   GG S   +  
Sbjct: 82  KID------TSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLS 135

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S L  +VLDEADEML +GF +++E IL  +P+ 
Sbjct: 136 GLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEY 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  +   Y  D V V + ++     +I  R + VA   + +A+  IL
Sbjct: 196 KQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRIL 255

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+ +       L    F   A++G+++Q +R   +  ++DG   + I
Sbjct: 256 EVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILI 315

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E+ +HR GRTGRAGR G +V  +    +   + +
Sbjct: 316 ATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSI 375

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP-EK 415
            +     ++    PSVE +  +   +    + D L    I    + + D     + P   
Sbjct: 376 EKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLAD 435

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RDR RDD    +     R   +G + + + VG 
Sbjct: 436 IAAALAVQTRNGEEFLMTEPPPDKRRDRDRDRDDR-GDRGPRKERPPREGLATYRIDVGK 494

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGI 531
           + K     ++  +    G++R   G I ++ D + VE+        +  L  T      I
Sbjct: 495 RHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVELPEKLPKKTLKALENTRISGVLI 554

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNS 556
            L+   G + +  G  S  +K    
Sbjct: 555 NLQPDRGPRREGAGKPSGKYKPHRK 579


>gi|317132017|ref|YP_004091331.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315469996|gb|ADU26600.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 530

 Score =  293 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 252/523 (48%), Gaps = 31/523 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+   G+   + +Q   +   L   DV+  AQTG+GKT+A+   + S +    
Sbjct: 11  LSEDVLKAIDLMGFEEPSQIQTQAIPVILEGNDVIGQAQTGTGKTLAYSAPVISLMEHGP 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  EL  +   T        GG  + R+ R LQ G  
Sbjct: 71  HQV------QALILVPTRELAIQVNDELVRINRFTHFTSIPVYGGQPIDRQIRALQKGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ DHIR   ++ SH++  VLDE+DEML++GF DDI+ +LD+ P +R+ L+FS
Sbjct: 125 IVVATPGRILDHIRRGTVDFSHVRFFVLDESDEMLNMGFIDDIQAVLDTLPAERQSLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  LA+ + K  V+  + +++    +  +     V   DR   +  IL     +
Sbjct: 185 ATMPMQIRKLAQQHMKPDVKNIVIAKSTLTATLTEQFYFEVKHRDRFETLCRILDVDEPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC T+  V    + +    + V  + G++ Q +R N L+  RDG     +ATDVAA
Sbjct: 245 SAIIFCRTKRGVDELVENMQSRGYIVEGMHGDMGQNQRQNTLKKFRDGNLDFLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ EL  + E+ +HR GRTGRA R G++  ++        +++ R  + 
Sbjct: 305 RGIDIENISHVINYELPEDAESYVHRIGRTGRANRTGIAYSLVTPREYIILKQIERVTHG 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGFL 421
            +  +  P+VE I E   + +L      + ++ ++ +    L ++ D E     +AA  L
Sbjct: 365 HIKRKEIPTVEDIYEVKYKNVLTK--VKEELEKNDFEKFKPLASELDDEYNLVDVAAALL 422

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +I        +                   A            G +   L+ G   K   
Sbjct: 423 KISFENELNFDY------------------ASSEKAREVRQSAGETRLFLNAGRMDKVTP 464

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           R ++  LC +SG  R  IG I +    +F  VS+   D +  +
Sbjct: 465 RDILRFLCDNSGFTRNEIGHIDIFDKFSFANVSSSAADAIIAS 507


>gi|302874235|ref|YP_003842868.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689501|ref|ZP_07631947.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302577092|gb|ADL51104.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 536

 Score =  293 bits (748), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 158/552 (28%), Positives = 266/552 (48%), Gaps = 26/552 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   N+   I +A+++ G+   + +Q   +   +   D++  AQTG+GKT AFG  +
Sbjct: 4   IKTFNELNLKDEILKAINDMGFEEPSPIQSESIPVGIEGYDLIGQAQTGTGKTAAFGSII 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +         P AL +APTRELA+QV  EL  +     + +    GG  + R+ 
Sbjct: 64  LNNMSEKR------RVPQALILAPTRELAIQVNEELVRIAKNMRLNILPIYGGQPIDRQL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG  IVVGTPGR+ DH+R K LN   +K +VLDEADEML++GF DDIE ++ S  +
Sbjct: 118 RALRNGVDIVVGTPGRVLDHLRRKSLNTEFVKFLVLDEADEMLNMGFIDDIEEVMKSLNE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT+  AI  L+K Y K   ++    +N    S I      +  SDR  ++  
Sbjct: 178 DRQTLLFSATMPDAIKRLSKRYMKSDAKLISIEKNTVTASTITQYYYEIKNSDRFESLCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+     + AI+FC T+  V      +    + V  + G+++Q +R N L+  ++     
Sbjct: 238 IIDADEPEAAIIFCKTKKGVDELVSSMQRRGYVVEGMHGDMNQNQRMNTLKKFKESNLDF 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ ++  VI+ +L  + E+ +HR GRTGRA ++G +  ++        +
Sbjct: 298 LVATDVAARGIDVENVTHVINYDLPQDAESYVHRIGRTGRANKEGKAYTLVTPREYIVLK 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--- 414
           ++ +     +     P+V+ I +   + +L      D+I+ ++         + D +   
Sbjct: 358 QIEKTTKSKIKRNSVPTVDEIYDVKYKNVLNK--VRDTIENEDLSKFIPYATELDDDYSL 415

Query: 415 -KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             +AA  ++I  +   A E  T    V    R      A +          G     +S 
Sbjct: 416 VDVAAALMKIAFSNELAYEYTTNALEVPEPMRNSSARGASR----------GQKRLFVSA 465

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G +     + L+     SS I  + IG I +  + +FV V    VD + +     K ++ 
Sbjct: 466 GRRDNVSPKELVQFFKDSSRIQPRQIGDIAIMENFSFVNVDTSIVDDILK-FSSGKRLKG 524

Query: 534 KYLGGEKPDFRG 545
           + +  E    R 
Sbjct: 525 RKINIEVAKERR 536


>gi|46581710|ref|YP_012518.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451133|gb|AAS97778.1| ATP-dependent RNA helicase, DEAD/DEAH family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235346|gb|ADP88200.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 153/556 (27%), Positives = 252/556 (45%), Gaps = 33/556 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++P  + + +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFGL L
Sbjct: 4   VESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPL 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              + A +       +  AL + PTRELA+QV   L  L     GV +    GG  +  +
Sbjct: 64  LQRIDAAD------RSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ GA +VVGTPGR+ DHI    L +  ++  VLDEADEMLD+GFR+DIE IL   P
Sbjct: 118 ASALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  +   FSAT+   I  LA+ + ++   + +       ++ +     V    R +A+  
Sbjct: 178 EWVQSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I   +  + AIVF +T+  V      L +      AL G+L+Q +R   +   R G   V
Sbjct: 238 IFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +L ++PE  +HR GRTGRAGR G +          +  
Sbjct: 298 LVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLR 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414
            + R     +     P+          ++L++    L           +  ++    DP 
Sbjct: 358 DIQRVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPT 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++AA  LR+                         D         + D   G      +VG
Sbjct: 418 QLAATLLRMIMQ---------------------RDRIDLPGARQTDDIGTGRVRLFFNVG 456

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            + +   R L+  +   +GI+ +SIG+I +    +FVEV A     +   +  ++    +
Sbjct: 457 RRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFR 516

Query: 535 YLGGEKPDFRGYKSSG 550
               +     G   + 
Sbjct: 517 LAVEQASPREGQDRAA 532


>gi|160937140|ref|ZP_02084503.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440041|gb|EDP17789.1| hypothetical protein CLOBOL_02031 [Clostridium bolteae ATCC
           BAA-613]
          Length = 569

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 150/550 (27%), Positives = 261/550 (47%), Gaps = 34/550 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E G+   + +Q   +   +  +D++  AQTG+GKT AFGL L   +  + 
Sbjct: 11  LDERIIRAITEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGLPLLQKVDPK- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     A+ + PTRELA+QV  E+         V  +   GG  + ++ R L++G 
Sbjct: 70  -----VKKLQAIVLLPTRELAIQVAEEMRRFAKFMHGVKVLPIYGGQDIVKQIRSLKDGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R K + + H+  VVLDEADEML++GF +D+E IL   P++R+ LMF
Sbjct: 125 QVIVGTPGRVMDHMRRKTVKVDHVLTVVLDEADEMLNMGFLEDMETILSQLPEERQTLMF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ +QKD V V +  +      +      V   ++   +  +L  +  K
Sbjct: 185 SATMPQAIAEIARKFQKDPVTVRVIKKELTVPKVTQYYYEVKPKNKVEVMSRLLDMYAPK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVFC+T+  V    + L    +    L G+L Q +R   +   R+GR  + +ATDVAA
Sbjct: 245 LSIVFCNTKRQVDDLVQELQGRGYFAEGLHGDLKQVQRDRVMDSFRNGRTDILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+E V + ++  + E  +HR GRTGRAGR+G +  ++      +   + R    
Sbjct: 305 RGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVMGKEVYKLRDIQRYCKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMV---DVLLAKHDPEKIAAGFL 421
            ++ +  PS+  I E   ++IL Q    L+     +   +    ++   +    +AA  L
Sbjct: 365 KIIPQAIPSLNDITEIKVEKILDQVQEVLNDTDLTKMVNIIEKKLMEEDYTSMDLAAALL 424

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFR-----------------DDSRAFKVGGGSRD--- 461
           ++   G  + + I         D                     + R       + D   
Sbjct: 425 KMSM-GDESEDIIDSFETARSLDELDSFGRGSSRGRGRERSAYGNRRKGATDRAAVDYVL 483

Query: 462 --NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
               +  +   +++G  Q+     ++  +   SGI  + +G+I +    TFV+V     D
Sbjct: 484 GEGDEKMARLFINIGKAQRITPGDILGAVAGESGIPGRMVGSIDMYDGYTFVDVPGRYAD 543

Query: 520 LLRRTVKLDK 529
            + + +   K
Sbjct: 544 DVLKAMAHAK 553


>gi|291280174|ref|YP_003497009.1| ATP-dependent RNA helicase DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
 gi|290754876|dbj|BAI81253.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Deferribacter
           desulfuricans SSM1]
          Length = 525

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 166/534 (31%), Positives = 261/534 (48%), Gaps = 30/534 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I EAL ++G+   T +Q+ ++   L  +KD++  AQTG+GKT AFG+ 
Sbjct: 4   MKEFEKLGVSKSILEALKKKGFEEPTDIQKLVIPKILNSDKDIVAQAQTGTGKTAAFGIP 63

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  +       S    L + PTRELA QV  E+  L  +  + +    GG S+  +
Sbjct: 64  LIEMIDRKK------SGVKCLILTPTRELANQVAEEINSLKGRRKLKIVPVYGGQSMELQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA IVVGTPGR+ DH++ K L+IS +   +LDEADEML++GF DDI+ I   +P
Sbjct: 118 LKRLKEGADIVVGTPGRILDHLKRKSLDISKIDFFILDEADEMLNMGFIDDIKTIFRYTP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR+L+FSAT+   I  LAK + KD   + + ++    S  +     V   D+  A+  
Sbjct: 178 ENRRVLLFSATMPREILNLAKTFMKDYELIKVDAKQLTTSLTEQIYFEVREEDKFEALCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I   +     ++FC T+  V      L +  +    L G+LSQ +R   L   +  R  +
Sbjct: 238 IRDMYPEFYGLIFCRTKVDVDTVANKLIDRGYNAEGLHGDLSQYQRERILHKFKTKRINM 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  VI+  L  NPE+ +HR GRTGRAG+KG+++  +  +  R   
Sbjct: 298 LVATDVAARGIDIDNLTHVINYSLPQNPESYVHRIGRTGRAGKKGIAITFVTPSEYRNLL 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + R +N  +  E  P VE I E   + I+ D   +  +    D       LL+  +PE 
Sbjct: 358 YIMRISNTEIKKEKLPDVEEIIENKKKHIIDDLKAVVENKEHKDYLDFAKELLSVGNPED 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  LR   A   + E  + +  V                     N KG S   ++ G 
Sbjct: 418 IVAAMLRYRFADDLSSESYSDIEEV-------------------TVNRKGKSRLFVAKGR 458

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
                   +   +     ++ + I  +RV    +F+ V  +  + +    K +K
Sbjct: 459 MDGMNETDIKKFIADKCKVDPKKIKDVRVFEKFSFITVPFEEAEYILSVFKKNK 512


>gi|168701792|ref|ZP_02734069.1| RNA helicase DeaD [Gemmata obscuriglobus UQM 2246]
          Length = 572

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 156/557 (28%), Positives = 263/557 (47%), Gaps = 26/557 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+  GY   T +Q   + P +   D++  A TG+GKT AF L +   L    
Sbjct: 28  LDSRLVERLTGLGYEEPTPIQREAIPPLIEGHDLIGRAATGTGKTAAFSLPILHGL---- 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +  + P +L + PTRELA+QV   +       GV V    GG  + ++ R L  G  
Sbjct: 84  ARSTARTKPTSLILVPTRELAMQVAESVAKYGQPLGVRVLPIYGGAPMDQQIRALDRGID 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  DH+R   L +  +  VVLDEADEMLD+GF +DIE IL ++P +R+  +FS
Sbjct: 144 VVVATPGRALDHMRRTTLKLDAITVVVLDEADEMLDMGFAEDIEAILAATPTERQTALFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT++P I  +A  + K+A  +++  +         +   A +V    +  A+  +L    
Sbjct: 204 ATMAPRIKAIAVKHLKNATEIHVTRDPVPAGELPKVRQTAYVVQRQYKLAALGRVLDGES 263

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++FC TR+ V   T+ L    ++  AL G ++Q  R   +++ R G+A + +ATDV
Sbjct: 264 PAAALIFCKTRSEVDELTEALGGRGYRPEALHGGMAQDARDRVMRLFRAGQANLLVATDV 323

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++  L    EN +HR GR GRAGR+G+++ V     Q     + R  
Sbjct: 324 AARGLDVEHLTHVVNFSLPLGIENYVHRIGRVGRAGREGVAITVAEPREQGALRAIERHT 383

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAG 419
              + +   P+   +RE+  +R        +++   E +    +      + DP  +A  
Sbjct: 384 GQRIEYGQVPTAATLREKRLER--TKVAIRETVAAGELEAFRAMFGSLVGELDPTDVALA 441

Query: 420 FLRI---HRAGLCAPEEITPVSLVSGR-DRFRDDSRAFKVGGGSRDNFKGS---SWFSLS 472
            L++    R G        PV+ V  R DR   D+       G+          +   +S
Sbjct: 442 ALKLAHRARGGDIDDGPDIPVATVPQRGDRNGRDNNPLPPRRGAGAFRGPGPRLARIFIS 501

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
            G +     R L+  +   +G+  + I +I +    + V+V  D  + +  ++    G++
Sbjct: 502 AGREAGIMPRDLVGAIANEAGLPGREIHSIEITERFSLVDVPEDAAEHVIESL---NGVR 558

Query: 533 LKYLGGEKPDFRGYKSS 549
           L+   G +   R  +  
Sbjct: 559 LR---GRRVSARRDRQG 572


>gi|254819463|ref|ZP_05224464.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 567

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 149/567 (26%), Positives = 264/567 (46%), Gaps = 23/567 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + + 
Sbjct: 13  TTFADLQIHPSVLRAVADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S +         ++A  AL +APTRELA+QV        A    +  +   GG S   + 
Sbjct: 73  SKIDVT------STATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYSVQL 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GAH+VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+
Sbjct: 127 AGLRRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPE 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +++ +FSAT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +
Sbjct: 187 YKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRV 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + 
Sbjct: 247 LEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTVAALKDGSIDIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + 
Sbjct: 307 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKA 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDP--E 414
           + +    ++     P+VE +  +   +            G +  +K+V     +HD    
Sbjct: 367 IEKATRQTLTETALPTVEDVNAQRVAKFADSITTALGAPGIDLFRKLVQDYEREHDTPMA 426

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IAA      R G         +         R+     +       + +  + + ++VG
Sbjct: 427 DIAAALALQSRDGEEF------LMAPEPPPERRERRTERRDRPEKPRSTRPFATYRIAVG 480

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKG 530
            + K     ++  +    G++R   G I + PD + VE+ A         L RT      
Sbjct: 481 KRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTFKRLERTRISGVL 540

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQ 557
           I L+          G      + K+ +
Sbjct: 541 INLQPDRSSAKARGGRDGGKPRRKHGE 567


>gi|312197808|ref|YP_004017869.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311229144|gb|ADP81999.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 566

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/576 (25%), Positives = 268/576 (46%), Gaps = 34/576 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL+E GY   + +Q   +   L  +DV+  AQTG+GKT AF L + S
Sbjct: 9   TFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPILS 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +       + ++A  AL +APTREL +QV      + +  TG+ V    GG +   +  
Sbjct: 69  RID------ARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLA 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             + GA +VVGTPGR+ DH+    L++  L+ +VLDEADEML +GF+++++ IL  +P  
Sbjct: 123 GFRRGAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDA 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  +++ Y +D V + + +     ++   R + VA   + +A+  +L
Sbjct: 183 KQVALFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+++     + L    F   A++G+LSQ +R   +  +RDG   + +
Sbjct: 243 EVEPFEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++    +     +
Sbjct: 303 ATDVAARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDP--EK 415
            +     +     P+   +  R   +                 + +V   + +HD     
Sbjct: 363 EKATRQPLTEMELPTPADVNARRVAKFHDAITAALDAPAHAVFRDLVLGYVGEHDVPLAD 422

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA    + R        + P +    R++    +   +    S         + + VG 
Sbjct: 423 IAAALAVMTRQ-EPGEFLLPPDTAPPAREKPARGAGRPRPVYAS---------YRIGVGH 472

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGI 531
            Q+     ++  L    G++R   G I ++ D + VE+ AD        L RT    + +
Sbjct: 473 YQRVTPGQIVGALANEGGLDRADFGRIDIRADYSLVELPADLSKDAQRALTRTRIAGQPL 532

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
            L+         R  + SG +   ++ G        
Sbjct: 533 NLRP-------ERPGRDSGARPGANRRGNPAPSAGR 561


>gi|120601130|ref|YP_965530.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561359|gb|ABM27103.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 532

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 153/556 (27%), Positives = 252/556 (45%), Gaps = 33/556 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++P  + + +A+ E G+   + +Q   +   L  +DV+  AQTG+GKT AFGL L
Sbjct: 4   VESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLPL 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              + A +       +  AL + PTRELA+QV   L  L     GV +    GG  +  +
Sbjct: 64  LQRIDAAD------RSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ GA +VVGTPGR+ DHI    L +  ++  VLDEADEMLD+GFR+DIE IL   P
Sbjct: 118 ASALRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  +   FSAT+   I  LA+ + ++   + +       ++ +     V    R +A+  
Sbjct: 178 EWVQSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I   +  + AIVF +T+  V      L +      AL G+L+Q +R   +   R G   V
Sbjct: 238 IFDAYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +L ++PE  +HR GRTGRAGR G +          +  
Sbjct: 298 LVATDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGQAFSFAAGRDVYKLR 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPE 414
            + R     +     P+          ++L++    L           +  ++    DP 
Sbjct: 358 DIQRVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPT 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++AA  LR+                         D         + D   G      +VG
Sbjct: 418 QLAATLLRMIMQ---------------------RDRIDLPGARQTDDIGTGRVRLFFNVG 456

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            + +   R L+  +   +GI+ +SIG+I +    +FVEV A     +   +  ++    +
Sbjct: 457 RRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFR 516

Query: 535 YLGGEKPDFRGYKSSG 550
               +     G   + 
Sbjct: 517 LAVEQASPREGQDRAA 532


>gi|327485805|gb|AEA80211.1| Cold-shock DEAD-box protein A [Vibrio cholerae LMA3894-4]
          Length = 644

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 162/583 (27%), Positives = 279/583 (47%), Gaps = 29/583 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 425

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW- 468
           L+  +             + A E           DR   D  A +  GG     +   W 
Sbjct: 426 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDSGQENHDWD 485

Query: 469 -FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            + L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++ 
Sbjct: 486 TYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRK 545

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
            + I+ K +G    +F  ++ S  +    ++G  +   R    
Sbjct: 546 LR-IRQKEVGAVVCEFDDFRES--RGGARREGGAREGGRRPEG 585


>gi|113954045|ref|YP_730263.1| superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
 gi|113881396|gb|ABI46354.1| Superfamily II DNA/RNA helicase [Synechococcus sp. CC9311]
          Length = 601

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 151/557 (27%), Positives = 268/557 (48%), Gaps = 36/557 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+++GY   + +Q+A +   +  +D++  AQTG+GKT AF L L   L  ++
Sbjct: 55  FSEALLKTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLERLQGDS 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 115 P------LPSVLVLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRRGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   LN S L+++VLDEADEML +GF DD+E+IL+  P++R++++F
Sbjct: 169 DVVVGTPGRVMDHMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y ++   + I +++++   I +R + +  S +  A+  +L     +
Sbjct: 229 SATMPNEIRRLSKRYLREPAEITIKTKDKEARRIRHRCITMQNSHKLEALNRVLEAVTGE 288

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L      V  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 289 GVIIFARTKAITLTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAA 348

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  I    +R    L R    
Sbjct: 349 RGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGNLERAVGQ 408

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----------KHDPEK 415
           ++     PS   I +    R L+  L  ++   D+ +    LL           + +P +
Sbjct: 409 AIEPMDIPSNAEINQSRLDR-LRTRLSTEATSEDKPEEETALLQELIQRVAQELEVEPGQ 467

Query: 416 IAAGFLRIH-----------RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +    +R+             + L AP          G        R  +      D   
Sbjct: 468 LTLAAMRLAVGEGPLLVQGDESWLKAPLRNDRRDDRRGDRGNDRGRRPERASRPPED--- 524

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDL 520
               F + VG + + +   L+  +   SG+  + IG I++    + V++      +  + 
Sbjct: 525 DMERFRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIFETHSLVDLPKGMPENVFNS 584

Query: 521 LRRTVKLDKGIQLKYLG 537
           LRR   +++ +Q++   
Sbjct: 585 LRRLKVMNRELQIRQDS 601


>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 533

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 160/531 (30%), Positives = 252/531 (47%), Gaps = 30/531 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  A+ + G+   + +Q   +   L  +D++  AQTG+GKT AF + L  
Sbjct: 9   SFADLGVSPEILRAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAFAIPLLM 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P  L + PTRELA+QV  E   +   T   V    GG S+ R+ + 
Sbjct: 69  RLQ------ARRGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQIKT 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  +VVGTPGR+ DH+  K L +  L+AVVLDEADEMLD+GF DDIE IL+++P  R
Sbjct: 123 LQRGVDVVVGTPGRVLDHLNRKTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATPPSR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSATI   I  LA+ Y +  V V+I  E     DI      +   D   A+  IL 
Sbjct: 183 QTLLFSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCRILD 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AI+FC T+  V    + L    +    + G+L Q +R+  +   R+G   + +A
Sbjct: 243 AEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEIDLLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  VI+ +   +PE+ +HR GRTGRAGR G ++ ++          + 
Sbjct: 303 TDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPLLRTIQ 362

Query: 361 REANVSVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           R   V +   P PS+  + +R      QR+L+     +      + +V  L  ++DP ++
Sbjct: 363 RLVKVRIERHPIPSLADVVDRRMEIWRQRLLEALGTGNLTP--YRTLVQELSGEYDPMEV 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWFSLSVGS 475
                                 L   +     D R  +    G     +G   F +++G 
Sbjct: 421 ---------------AAAALKLLARDQGTAGPDVRPPRAEKFGGTGAEEGMVRFFMNIGR 465

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            Q      ++  +   + I    IGAI +  + TF+EV  +    +   ++
Sbjct: 466 NQGVTPADIVRGVAEQARIPGGVIGAIDIYDNFTFLEVPEEVAHQVAAAMR 516


>gi|163839675|ref|YP_001624080.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953151|gb|ABY22666.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 652

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 145/541 (26%), Positives = 253/541 (46%), Gaps = 15/541 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL + GY   + +Q A +   L  +DV+  AQTG+GKT AF L   S +        
Sbjct: 55  VLAALKDVGYEKPSPIQAATIPVLLEGRDVVGLAQTGTGKTAAFALPALSRMAN----LP 110

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                  L +APTRELA+QV        A       +   GG +   +   L+ GA +VV
Sbjct: 111 ATKDTQILVLAPTRELALQVAEAFSSYAAHMDNFSVLPVYGGSAYGPQLAGLRRGAQVVV 170

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++S+L+ +VLDEADEML +GF DD+E IL  +P+ +++ +FSAT+
Sbjct: 171 GTPGRVIDHLSKGSLDLSNLQYLVLDEADEMLRMGFADDVEQILAETPEDKQVALFSATM 230

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +AK Y  +   +++ ++     +   R + V    + +A+  IL        I 
Sbjct: 231 PGQIRRIAKKYLNNPAEISVKAKTTTGENTRQRYLQVMGPHKLDAMTRILEVEDYDGVIA 290

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+ +       L    ++  A++G++ QQ+R   ++ +R G   V +ATDVAARG+D
Sbjct: 291 FVRTKMATEELADKLKSRGYRAAAINGDIPQQQRERTVEALRSGSIDVLVATDVAARGLD 350

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +     + +     V  
Sbjct: 351 VERISLVVNYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPREKYLLRAIEKATRQPVEQ 410

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHR 425
              PS + I      +        +++   E    ++++     +HD           + 
Sbjct: 411 MHLPSADTINNLRLSKFADQ--ITETLGSQELSVFRELISTYEQEHDVTAAEIAAALAYM 468

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           A       +  +       +       F   G +R   +G++ + ++VG +Q+     ++
Sbjct: 469 AQGGESLLVKDLPAAPEYQKRERAKDGFGSRGPTRTLTEGNATYRIAVGRRQRVMPGSIV 528

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKP 541
             +    G++   IG I ++ D T VE+ A    D    L +T    + I+L+   G KP
Sbjct: 529 GAIANEGGLSSSQIGGIDIRADHTLVELPAELSKDQWRALSKTRIGGELIRLELDSGRKP 588

Query: 542 D 542
            
Sbjct: 589 R 589


>gi|220929887|ref|YP_002506796.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|220000215|gb|ACL76816.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 565

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 163/592 (27%), Positives = 278/592 (46%), Gaps = 49/592 (8%)

Query: 1   MK--IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   F+++     +  A+ + G+   T +Q   +   L   D++  AQTG+GKT AFG+
Sbjct: 1   MKNLSFKDLTLSDEVQRAIVDMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVH 115
                +  + D          L ++PTRELA+Q   EL  +     G+ +    GG  + 
Sbjct: 61  PAVEKIDPQIDSI------QVLVLSPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPID 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+   L+    I++GTPGR+ DH+R + + +  LK +VLDEADEML++GFR+DI+ IL+ 
Sbjct: 115 RQIMALKKRPQIIIGTPGRVMDHMRRRTIKLESLKMIVLDEADEMLNMGFREDIDTILEK 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R+ ++FSAT+   I  L K YQK+ V + IA +      I+   + V  S +   +
Sbjct: 175 VPEDRQTILFSATMPKEILELTKKYQKNPVHIKIAHKELTVPSIEQYYLEVKESAKLEVL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++  +  K ++VFC+T+  V   T  L    F   AL G++ Q+ R   + + R G  
Sbjct: 235 SRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMNLFRKGNF 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARGID+ D+E V + +L ++ E  +HR GRTGRAGR G +   I      +
Sbjct: 295 DILIATDVAARGIDVDDVEAVFNYDLPNDDEYYVHRIGRTGRAGRTGKAFTFIYGREMYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQD-----------------PLFLDSIQG 398
              + R    +++    PS+  + E+    IL+                    F+D+I  
Sbjct: 355 LRDIQRYTKSTIIPMKPPSLNEVEEKKMSNILKALKENLKDESVSKFASHIERFIDTINN 414

Query: 399 DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
           + ++  D  ++  D   IA   L+++         +                        
Sbjct: 415 ESEEHDDNFVSSLD---IAGALLKMYGEQSGNLPSVV----------------NEIDNAV 455

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
              + K      +++GS  K + + ++  L  S+G+  + +GAI +    +FVEV  +  
Sbjct: 456 EPGSSKDMVRLFINIGSDSKIQPKHIIESLVASTGLPGKLVGAIDIFDRYSFVEVPKEFA 515

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
             + +++K +  I+ K +  EK + R     G  S N      +R  +   A
Sbjct: 516 PEVLKSMK-NYTIKGKRINIEKSNARKKSGRGS-SFNRSTPFNRRSPKKSKA 565


>gi|158333359|ref|YP_001514531.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
 gi|158303600|gb|ABW25217.1| DEAD/DEAH box RNA helicase [Acaryochloris marina MBIC11017]
          Length = 574

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 160/581 (27%), Positives = 269/581 (46%), Gaps = 28/581 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     + +A+ E GY + + +Q   + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FADLAIAPPLLQAVEEVGYESPSPIQAQSIPPLLAGRDLLGQAQTGTGKTAAFALPLLSQ 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           L            P  L +APTRELA+QV   ++       G  +A   GG ++  + R 
Sbjct: 69  LDLSQA------HPQILVLAPTRELAIQVAEAMQTYARHLPGFHIATLYGGQNISTQLRQ 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+VVGTPGRL DH+    L + +L  VVLDEADEML +GF +D+E ILD +PK R
Sbjct: 123 LRRGVHVVVGTPGRLIDHLLRGTLKLENLSTVVLDEADEMLRMGFIEDVEKILDETPKGR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+  AI  +A+ +  D V + I S+    S +  R   V    + +A+  IL 
Sbjct: 183 QVALFSATMPSAIRRVAQRHLNDPVEIKIKSKTATVSTVTQRYWQVRGLSKLDALTRILE 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +   + L    +    LSG++SQ  R   ++ ++ GR  + +A
Sbjct: 243 VEDFEAMLVFVRTKVMAAELAEKLEARGYSSAVLSGDISQPLREKTIERIKAGRLDIIVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR+G ++  +    +R    + 
Sbjct: 303 TDVAARGLDVERISHVINYDIPYDTETYVHRIGRTGRAGRQGDAILFVSSREKRMLRSIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------ 414
           +     +     PS   I +R   +  Q  +  D+I+  +    + L++ +  E      
Sbjct: 363 QATRQPIQPMQIPSHADIADRRIVQFKQ--VITDTIEDQDLDFFEDLISNYQQEQDLSLR 420

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +IAA    + +           +S   G    +  + A  +G  S         F + VG
Sbjct: 421 EIAASLAYLVQKDKPLVPPKEDLSSDPGHA-VQTSNWAADLGKPSHQQ---MQLFRIEVG 476

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKG 530
            + + + + ++  +     +  + IG I++    + V +           L++     + 
Sbjct: 477 RQHEVKPKNIVGAIANEVNLAPRYIGQIKLFDTFSTVYLPECMPKPVFQHLKQVRVRGQK 536

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           + +     E    R  K SG  S   +       K   G  
Sbjct: 537 LNISLCTKE---ERSRKHSGKSSHKGRHKKHSHRKAKAGKR 574


>gi|73667695|ref|YP_303710.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
 gi|72394857|gb|AAZ69130.1| ATP-dependent RNA helicase [Methanosarcina barkeri str. Fusaro]
          Length = 579

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 161/572 (28%), Positives = 274/572 (47%), Gaps = 29/572 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   + +AL ++G+   T +QE ++   L+ + D++  AQTG+GKT AFG  +   +  +
Sbjct: 12  LSDSMLKALKKKGFEEPTPIQEKVIPLFLKGECDIIGQAQTGTGKTTAFGAPIIEKIPEK 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +        A+ + PTRELA+QV  EL  L     + +    GG S+ ++ R L++G 
Sbjct: 72  SGKV------QAIVLTPTRELAIQVSEELNSLKGDKKLHIVPIYGGQSMTQQFRMLKSGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+  K LN+ ++   VLDEADEML++GF DDI+ IL ++   +RML F
Sbjct: 126 DIVVGTPGRVIDHLERKSLNLENIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K + K+   V I  E+   +  +     V  SD+  A+  I+      
Sbjct: 186 SATMPKPILGIIKKHMKNYEYVAIKKEDLDVNLTEQIYFEVKESDKFEALCRIIDIEDEF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+   S+  + L +  +   AL G+LSQ+ER   L   R  +  + +ATDVAA
Sbjct: 246 YGLVFCRTKTDTSQLAQKLGDRGYAADALHGDLSQREREKILNRFRKQKINILVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +  
Sbjct: 306 RGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIKKTSKS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           ++     P ++ + +    R+    +    +   GD  +M +  L ++  EKI A  L+ 
Sbjct: 366 AMKRGRIPEIKDVIKAKRARVKAELEETIKNEEYGDCLEMSEKFLEEYPAEKILAALLKY 425

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               +                   D+S   ++ G S  + KG +   +++G         
Sbjct: 426 SFKEMF------------------DESMYTEISGSSYVDRKGKTRLFIAMGKADGMTPEK 467

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           L   +   +G++   I    + P  +FV V       L    K  K  +  ++   +   
Sbjct: 468 LCEFIQEETGVSDLKIRDAEIFPHFSFVTVPFAQASALLEIFKDKKRGRKPFIELAQKSK 527

Query: 544 RGYKSSGFKSKNSQDGATKRFKRFK--GASKN 573
           R    S  + +      ++ + R      S+N
Sbjct: 528 RRSSKSADEYRGGTRNGSRSYSRNDSWNGSRN 559


>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 625

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 170/623 (27%), Positives = 280/623 (44%), Gaps = 60/623 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLNESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           +++          +AP  L +APTRELAVQV             +  +   GG S+ ++ 
Sbjct: 66  NSIDPNT------NAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK
Sbjct: 120 NALRRGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++ +FSAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +
Sbjct: 180 TRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A+  ++ G+  + 
Sbjct: 240 LEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIDQLKRGQLDII 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEK 415
           + R  N  +     PS E + ER   R+ +    + S   +  K     L    + D + 
Sbjct: 360 IERATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQDLEFMKGAVATLCQQLEVDTDI 419

Query: 416 IAAGFLRIHRAGLC-------------------------APEEITPVSLVSGRDRFRDDS 450
           +AA  L+  +                                +          DR R +S
Sbjct: 420 LAAALLKQVQKDRPLQLHTMNERQRDSRDDRNSRDRDDRGSRDRNDRGPRDRSDRPRRES 479

Query: 451 RAFKVGGGSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
           R      G+ D+ K         + + VG         ++  +   + I+ + IG I++ 
Sbjct: 480 RPTPANLGAADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLF 539

Query: 506 PDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE--------------KPDFRGYK 547
             +T +++      + +  L++     + + ++   GE              +P   G +
Sbjct: 540 DQVTAIDLPDGMPKEVLQHLKKVRVCGRPLNIREAAGETFANTSGGDSRPPRRPRKPGGE 599

Query: 548 SSGFKSKNSQDGATKRFKRFKGA 570
            SG    + +    ++  R    
Sbjct: 600 RSGSDRGDRRPSGDRKPHRKGPK 622


>gi|332827587|gb|EGK00333.1| hypothetical protein HMPREF9455_03472 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 611

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 174/605 (28%), Positives = 283/605 (46%), Gaps = 44/605 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L E  D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETSDIIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +  +       + P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  VLQKIEVKE------NVPQALILCPTRELCLQIAGDLADYSKYIDNLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G  I+V TPGRL D I  K +++ ++K VVLDEADEML++GF + I+ IL   
Sbjct: 115 QIKSLKRGVQIIVATPGRLIDLINRKTVDLKNIKYVVLDEADEMLNMGFTESIDEILSKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R ML+FSAT+   I  + K Y +    + I  +N   +++ +   +V   D+  A+ 
Sbjct: 175 PDERVMLLFSATMPKEIAKITKKYMQSPKEITIGRKNEGSNNVKHVYYMVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     I+FC TR         L +  +   +L G+LSQ +R   +Q  R    +
Sbjct: 235 RIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIHNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G S+ ++    + + 
Sbjct: 295 LLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSISIVHVKEKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---------L 407
             + +  N        PS EAI E+    ++     ++ ++ +E ++ ++          
Sbjct: 355 REIEKIINKKFEQGVIPSGEAICEKQLFSLVD---RIEKVKVNEDEISNLLPSVYRKLDW 411

Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRD-----RFRDDSRAFKVGGGSR 460
           L K D  K  +A  F R+      A E  TP    S  D     R +D  R+ +  GGSR
Sbjct: 412 LEKEDIIKRVVALEFNRLIDYYRDADEIETPSDRFSKGDDKSYPRRKDRERSDRSSGGSR 471

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
              KG S   +++G         LM ++       + +IG I +  + +F EV       
Sbjct: 472 GAEKGYSRLFINIGRTDSVNPATLMGLVNDFVP-EKVNIGRIDIMQNFSFFEVPEKDAQK 530

Query: 521 LRRTV--KLDKGIQLKYLGGEKPDF---------RGYKSSGFKSK---NSQDGATKRFKR 566
           +   +  +   G ++     +             R  +  G++     +  D  +KR   
Sbjct: 531 VISAMSRQEQNGRRISVEVAQGGGGGDRGNSGASRFERGGGYRGNSGSSRPDKGSKRNSD 590

Query: 567 FKGAS 571
           FK + 
Sbjct: 591 FKSSK 595


>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|187772242|gb|EDU36044.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
           15579]
 gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
          Length = 524

 Score =  291 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 148/527 (28%), Positives = 259/527 (49%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           STL  E  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  STLCDEGKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  +VLDEADEML++GF +DIE I+ S+P++
Sbjct: 120 DIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  AI  I
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERIIKSKITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                           +   +      LSVG
Sbjct: 418 EVSAALMEMLFSKEMSFDYTN-----------------------DKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +   + +    IG I +    TF++VS++  + +
Sbjct: 455 RKDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSSNTAEKI 501


>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
           JR1]
          Length = 527

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 144/536 (26%), Positives = 252/536 (47%), Gaps = 38/536 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI      A+ + G+   T +Q + +   L  +DV   AQTG+GKT AFG+     +   
Sbjct: 11  NISPKTLRAIEDMGFEEPTPIQVSTIPAILDGRDVTGQAQTGTGKTAAFGVPAIERVD-- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               + +     L ++PTRELA+Q   E   L      +  +   GG  + R+ R LQ G
Sbjct: 69  ----TGSRETQVLVLSPTRELAIQTAEEFSRLAKHHQGINILPIYGGQPIDRQFRALQRG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DH+    L+   +K VVLDEAD+MLD+GFR+DIE ILD +P+ R+ ++
Sbjct: 125 VQIVVGTPGRVLDHLDRGTLSFGAVKVVVLDEADQMLDMGFREDIEKILDDTPRDRQTIL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  ++K +QK+   +++A +      I+   + V   DR   +  +L  +  
Sbjct: 185 FSATLPKPILEISKKFQKNPEFISVARKEVTVPQIEQLYLEVRSRDRLEILTRLLDMYDP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+  V   T  L    +    L G++ Q  R   +   R G   + +ATDVA
Sbjct: 245 DLTLIFSNTKRGVDDLTTHLQARGYFAEGLHGDMKQTLRDRVMAKFRAGSIDILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++LVI+ ++  + E  +HR GRT RAGR G +V  +      +   +     
Sbjct: 305 ARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGRAVTFVGPKEYFKLRTIQNYTK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + +   P P+   + E   ++++      +   ++      +  ++   +   ++AA  L
Sbjct: 365 IKIARIPLPTQGDVEESRTRKLIDRVHQTIDEGNLDQYANLVERIIAEDYTSLEVAAALL 424

Query: 422 RIHRAGL--CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           ++   G+    P++I P                           +G +   + VG + + 
Sbjct: 425 KLELGGVGQGQPQDIRPA--------------------------QGQALLRIPVGREHQI 458

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
             + ++  L   +GI   +IGAI +    + V+V  D  + +   +K     +++ 
Sbjct: 459 RPKDIVGALAGETGIPGSAIGAINIYDTYSTVDVPLDAAERVIEGMKGKTIARVRL 514


>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 593

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 170/594 (28%), Positives = 278/594 (46%), Gaps = 30/594 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   Q + +A+ + G+   + +Q   +   L  +D +  AQTG+GKT AFGL +  
Sbjct: 4   SFEELGLSQDLLDAVKDMGFEEPSPIQVLAVPALLAGRDAVGQAQTGTGKTAAFGLPILE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            +++            AL + PTRELA+QV  EL +    K GV +    GG  + R+ R
Sbjct: 64  KVIS-------GKGVQALVLCPTRELAIQVAEELSKLAARKKGVTILPVYGGQLIERQFR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA +VVGTPGR+ DH++   L +  +  VVLDEADEMLD+GFR+DIE IL+ +P  
Sbjct: 117 ALAKGAQVVVGTPGRIIDHLQRGTLRLDEVDVVVLDEADEMLDMGFREDIEAILERTPDG 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+ P I  L+K + ++   + IA +      I+     V    + +A+  +L
Sbjct: 177 CQRILFSATMPPPIRELSKRFLREPEMLTIAHKMLTIPAIEQTYYEVRPYQKMDALCRVL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G + A+VFCST+  V   T  L +  +Q   L G+L+Q +R   +Q  R     + +
Sbjct: 237 DSQGFRKALVFCSTKRGVDEVTTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D++ VI+ ++  + E  +HR GRTGRAGR G +   +    Q +   +
Sbjct: 297 ATDVAARGIDVDDVDAVINYDMPHDVEKYVHRVGRTGRAGRVGSAFTFVTMREQYKLRDI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPE--- 414
            R     +     P++  +      R+L++          E+   +V+  LA+  PE   
Sbjct: 357 IRCTKARIKQGRLPTLRDVDNIRTSRLLEEVRQTVEAGTPERWLALVEDFLAERFPEGGV 416

Query: 415 ---KIAAGFLRIHRAGLCAPEE---------ITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
              ++AA  L++        ++           P          RD           R N
Sbjct: 417 TGREMAAALLKLLMQRDFGNQDASREPDVFAEPPRRSAPDGGPSRDARGGDSSNPRGRKN 476

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
               +   +SVG   K   R L+  +   SGI+ + IGAI ++   + VEV+ +  + + 
Sbjct: 477 SAPMTKLRVSVGHTHKVSPRELVGAIAGESGISSRDIGAIGIRQQYSVVEVAEEVAEHVL 536

Query: 523 RTVKLDKGIQLKYLGGEKPDFRGYKSSGFKS---KNSQDGATKRFKRFKGASKN 573
             +     I    +     D     +   K       +    K  K+ +GA++ 
Sbjct: 537 AVLNHGVFICGTRVSAAVDDGGTGTAHPRKPLNFGPRRQRPGKYGKKPRGAARE 590


>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
           sp. Re1]
 gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter sp. Re1]
          Length = 529

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 160/549 (29%), Positives = 280/549 (51%), Gaps = 28/549 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +  A+++ G+   T +Q   +      +DV+  AQTG+GKT AFGL + 
Sbjct: 4   MKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGLPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
             +  ++          A+ + PTRELA+QV  EL+ L     G+ +    GG  + R+ 
Sbjct: 64  DMIDTDDKNQ------QAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GTPGR+ DH+R   L + + K VVLDEADEMLD+GFR+DIE IL+ +PK
Sbjct: 118 HALKRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSATI   I  LA+ Y  +   + +  +      ++     V   D+  A+  +
Sbjct: 178 ARQTLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + ++    A+VFC+T+  V    + L    +    L G++SQ +R   +   ++G   + 
Sbjct: 238 IDFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+++V++ ++  N E  +HR GRTGRAGR G +   +      + + 
Sbjct: 298 VATDVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVD-VLLAKHDPEK 415
           + R AN  ++    PS+  + E     +L+    +  D   G   + ++ ++  ++    
Sbjct: 358 IQRYANTKILRREIPSLLDVEETRINLLLEKVKQVVDDGGLGKYNQWIERLMEEEYTSLD 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +AA  L+I                V G+D  ++   + ++   S     G +   +++G 
Sbjct: 418 LAAALLKI----------------VLGKDGEQEQPESSELDIESTGGDSGMARLFINIGR 461

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
            QK  A+ ++  +   +G+  + IG+I +    TFVEV A+    +  T+K +  I+ K 
Sbjct: 462 NQKIRAKDIVGAIAGETGMPGKLIGSIDIYDKFTFVEVPAEYAVDVLNTMK-NNQIKGKK 520

Query: 536 LGGEKPDFR 544
           +  E  + +
Sbjct: 521 INIEPANKK 529


>gi|254432488|ref|ZP_05046191.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
 gi|197626941|gb|EDY39500.1| cold-shock deAd box protein a [Cyanobium sp. PCC 7001]
          Length = 610

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 152/559 (27%), Positives = 265/559 (47%), Gaps = 35/559 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I EAL+  GY   + +Q+A +   +  +D++  AQTG+GKT AF L L + L AE  +
Sbjct: 58  PEILEALAAIGYSEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLAGLDAEQRK 117

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHI 127
                 P  L +APTRELA+QV        A+          GG     +   L+ GA +
Sbjct: 118 ------PQVLVLAPTRELALQVAESFNSYAAQLPQVRTVAVYGGADFRDQIHHLRRGAQV 171

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L   P++R++++FSA
Sbjct: 172 VVGTPGRVMDHMRQGTLDLSELRSLVLDEADEMLRMGFIDDVEWVLGQLPEQRQVVLFSA 231

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +++ Y      + I ++    S I  R + V    +  A+  +L    ++  
Sbjct: 232 TMPAEIRRISQQYLNGPAEITIRTKAADASRIRQRFLTVPAPLKLAALERVLESETSEGV 291

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+A      + L  H + V  L+G++ Q +R   ++ +++G+  V +ATDVAARG
Sbjct: 292 IIFARTKAITLTVAESLEAHGYDVAVLNGDVPQAQRERTIERLKNGQVDVLVATDVAARG 351

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R A   +
Sbjct: 352 LDVERIGLVINYDIPFDGEAYVHRIGRTGRAGRSGEAILFLTPRERRFLGGLERAAGKPI 411

Query: 368 VWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEK--------- 415
                PS   I +    R+ Q   + L   ++  +E+ ++  ++ +   E+         
Sbjct: 412 EPMEVPSNATINQNRLDRLRQRLTNALHKSAVSPEEQALLSEIVQRVAQEQTCTPEQLAL 471

Query: 416 ------------IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                       +  G     +     P          GRD    + R  +         
Sbjct: 472 AALELSLGGKPLLLHGNDDFTQVRSQGPNRRDGRESRDGRDFGNREPRRGRSERPVGAPE 531

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
                F + +G + + +   L+  +   +G+  ++IG I++    + +++      D   
Sbjct: 532 PDMERFRVELGWRDRIKPGNLVGAIANETGLQGRAIGRIQIFDTHSIIDLPKGMPEDIFQ 591

Query: 520 LLRRTVKLDKGIQLKYLGG 538
            LR    L+K +Q+    G
Sbjct: 592 GLRNLRVLNKPLQISRFRG 610


>gi|258623163|ref|ZP_05718173.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
 gi|258584555|gb|EEW09294.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM573]
          Length = 663

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 273/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 33  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 93  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 327 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAGF 420
           S+     P  + + E    ++ Q+ L  D      ++  D++       + D   +AA  
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQE-LAADKEHSSLERFADLVEKLQASLEIDSTTLAAIL 445

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 505

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  +
Sbjct: 506 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRKLR 565

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 566 -IRQKEVGAVVCDFDDFRES 584


>gi|159903626|ref|YP_001550970.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 604

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 152/551 (27%), Positives = 253/551 (45%), Gaps = 25/551 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE       +   L  +GY + T +Q+A     +  +D+L  AQTG+GKT AF L +   
Sbjct: 54  FEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILER 113

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +        AP  L +APTRELA+QV             V  +   GG     +   
Sbjct: 114 IKQDT------RAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQINA 167

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DHIR      + L+ +VLDEADEML +GF DDIE+IL+  P KR
Sbjct: 168 LRRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQLPAKR 227

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +M+ FSAT+   I  L+K Y  +   + I ++ ++   I  R +++  S +  A+  +L 
Sbjct: 228 QMIFFSATMPSEIRRLSKQYLHEPAEITIKAQKKEAQLIRQRYIVIQNSFKLEALKRVLE 287

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  I+F  T+A   R ++ L      V  L+G++ Q  R   ++ +R G   + +A
Sbjct: 288 TTADEGVIIFARTKAITLRLSESLEALNHNVAVLNGDVPQTLRERTIERLRQGGIDILVA 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +     L 
Sbjct: 348 TDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAILFVSPRERSFINNLE 407

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE--- 414
           R    S+     P+ E I +    ++   L   +       +E +++  L+ +   E   
Sbjct: 408 RAVGQSIEKMEIPNNEIINQHRINKLKNNLSQAVETPRQHEEETEILKCLIKEVGEELEI 467

Query: 415 ---KIAAGFLRIHRAGLCAPEEITP-------VSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
               IA   L +    L    +          +S  +   R        K    S    K
Sbjct: 468 ETKDIAVAALNLAIGSLPLKIQEDESWLSQQNISRKNYDRRDDRGRSRRKNSFNSSHPDK 527

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
               + L VG + + +   ++  +   SG+    IG I++  + + V++       + ++
Sbjct: 528 DKERYKLDVGHRDRVKPGNIVGAIANESGLKGNMIGRIQIFDNYSLVDLPKGMPTNIYKS 587

Query: 525 VKLDKGIQLKY 535
           +K  K +  + 
Sbjct: 588 LKTVKVMNKEL 598


>gi|258624003|ref|ZP_05718956.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
 gi|258583797|gb|EEW08593.1| ATP-dependent RNA helicase DeaD [Vibrio mimicus VM603]
          Length = 663

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 162/559 (28%), Positives = 274/559 (49%), Gaps = 23/559 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 33  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 93  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 327 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++ Q+          E+  ++V+ L A  + D   +AA  L
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDSTTLAAILL 446

Query: 422 RIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +  +             + A E           DR   D  A +  GG          + 
Sbjct: 447 KRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQ 506

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  + 
Sbjct: 507 LQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRKLR- 565

Query: 531 IQLKYLGGEKPDFRGYKSS 549
           I+ K +G    DF  ++ S
Sbjct: 566 IRQKEVGAVVCDFDDFRES 584


>gi|118462257|ref|YP_880643.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
 gi|118163544|gb|ABK64441.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium 104]
          Length = 566

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 150/563 (26%), Positives = 261/563 (46%), Gaps = 24/563 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         ++A  AL +APTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDVA------STATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ 
Sbjct: 128 GLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +
Sbjct: 248 EVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +     +     P+VE +  +   +            G +  +K+V     +HD     
Sbjct: 368 EKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVPMAD 427

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      R          +       + +  + + ++VG 
Sbjct: 428 IAAALAVQSRDGEEFLMAPEPPRERRER------HTERRERTEKPRSTRPLATYRIAVGK 481

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGI 531
           + K     ++  +    G++R   G I + PD + VE+ A      +  L +T      I
Sbjct: 482 RHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGVLI 541

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK 554
            L+         RG      + K
Sbjct: 542 NLQPDRAAAK-ARGRDGGKPRRK 563


>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
           DSM 11571]
          Length = 536

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 142/553 (25%), Positives = 262/553 (47%), Gaps = 32/553 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A+ + G+   T +Q+  +   L  +DV   AQTG+GKT AF + L   +  E
Sbjct: 11  NISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEKIEPE 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                   +  ++ ++PTREL +Q+  E   L      +  +   GG ++ R+  +L+ G
Sbjct: 71  K------CSVQSIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHELKKG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI++GTPGR+ DH++   L++S +K VVLDEAD+ML++GFR+D+E IL  +P +R+ ++
Sbjct: 125 VHIIIGTPGRVMDHMKRGTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQTIL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  ++K++QK    V I         I+ + + V   D+   +  ++  + +
Sbjct: 185 FSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCRLIDINSS 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++FC+T+ +V   +++L    +    L G++ QQ+R   +   R G   + IATDVA
Sbjct: 245 DLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+++V + ++  + E  +HR GRTGRAG+ GMS   +      +   + + A 
Sbjct: 305 ARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKLRMIKKIAK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V++V    P+   +     +++L   +  +  + I      +  ++   +   +I+A  L
Sbjct: 365 VNIVRIAIPNAADVENSRIEKVLDRVKSIINEEDIGLYIPAVERLMEEDYTLSEISAALL 424

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +I   G     +                    +   G      G   F +++G  +    
Sbjct: 425 KIQLEGSSGKVQP-----------------GEEFEPGDTGAEPGMVRFFVNIGKNKGVRP 467

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
              +  +   + I    IGAI +  D +FVE+       +   +      +    G E  
Sbjct: 468 SDFVGAIAGEAEIPGNEIGAINIMKDFSFVEIPEQYAKTVFEVMN-----RGTIRGNEVS 522

Query: 542 DFRGYKSSGFKSK 554
                +    +S+
Sbjct: 523 FEPARRERKQRSR 535


>gi|197123541|ref|YP_002135492.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173390|gb|ACG74363.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 565

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 237/568 (41%), Positives = 336/568 (59%), Gaps = 13/568 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVA+GL L  
Sbjct: 2   TFTELGAHPALARALERRGYSEPTTVQEAVFTPALRGRDLLVSSATGSGKTVAYGLVLGG 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +LL +   F PA AP  L +APTRELA+QV REL WL A+    V  C+GG+   RE R 
Sbjct: 62  SLLGDAPAFGPAGAPAGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+VVGTPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ R
Sbjct: 122 LSDGAHLVVGTPGRLLDHHRRGALDLSELRALVLDEADEMLDMGFRDELEAILAAAPEGR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++FSAT+   I  LA+ Y  D  RV        H+DI YRA +VA S+R+ A+VN+LR
Sbjct: 182 RTILFSATLPKPIVELARRYTSDPARVAATPAGEAHADITYRAHVVAPSERELAVVNVLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +A
Sbjct: 242 ALEPPRALVFRATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLP L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ 
Sbjct: 302 TDVAARGLDLPGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERML 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           R+A V V W P P+ EAIR  D  R+  +     +    DE+     LL+  DP  +AA 
Sbjct: 362 RDAGVRVEWAPVPAAEAIRASDEARLAGEVDALSEDATDDERAAAARLLSGRDPVLVAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +R  RA L +PE++      + +       RA + G  +       +WF +++G ++KA
Sbjct: 422 LVRSTRARLPSPEDLPETVHAARQAPSPRGERAPRRGPPAEV-----AWFRINLGREKKA 476

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK----GIQLKY 535
           + +WL+P+LCR  G+ R  IG I +    T  EV+         T +       G++++ 
Sbjct: 477 DPKWLLPLLCRRGGVTRDEIGKILIGATETRFEVARAAAARFGATARRPDPRAPGVRIEP 536

Query: 536 LGGEK-PDFRGYKSSGFKSKNSQDGATK 562
           +   +        + G ++  ++   T+
Sbjct: 537 VREARASGEHRAHAGGERAPRARRPVTR 564


>gi|145594638|ref|YP_001158935.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145303975|gb|ABP54557.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 579

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 158/555 (28%), Positives = 264/555 (47%), Gaps = 32/555 (5%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T +Q   + P L  +D+L  A TG+GKT AF L +   + A     +    P+AL
Sbjct: 40  GYEEPTPIQREAIPPLLAGRDLLGQAATGTGKTAAFALPMLQRMPANRSTTN----PVAL 95

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELAVQV         + G  V    GG  + R+ R L  G  +VV TPGR  DH
Sbjct: 96  VLVPTRELAVQVSEAFHRYGKELGARVLPIYGGQPIGRQLRALDAGVDVVVATPGRALDH 155

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    L +  +  VVLDEADEMLD+GF +DIE IL+ +P++R+ ++FSAT+   I  +A+
Sbjct: 156 IARGTLRLGDVGTVVLDEADEMLDMGFAEDIEAILEHAPEQRQTVLFSATMPARIDGMAR 215

Query: 199 NYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +  D +R+          +   +   A LV+ + +  A+  +L       AIVFC +R 
Sbjct: 216 AHLTDPIRILIAREKPVAGEAPRVRQSAYLVSRAHKPAALGRVLDVESPTAAIVFCRSRE 275

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V R T+ +    ++  AL G +SQ++R   +  +R G A + +ATDVAARG+D+  L  
Sbjct: 276 EVDRLTETMNGRGYRAEALHGGMSQEQRDRVMGRLRAGTADLLVATDVAARGLDVEQLSH 335

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ ++ S PE+ +HR GR GRAGR+G+++ +      R  + + R     +  +  P+V
Sbjct: 336 VVNYDVPSAPESYVHRIGRVGRAGREGVAITLAEPRAHRMLKTIERVTGQRITIDKIPTV 395

Query: 376 EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA----KHDPEKIAAGFLRIHRAGLCAP 431
             +R R  +  L      +S+  D+ +   V++     + D  ++A   +R+      A 
Sbjct: 396 ADLRNRRLE--LTQAALRESLLEDDLEPFRVIVESLSDEFDLMEVALAAVRL------AH 447

Query: 432 EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----------GSSWFSLSVGSKQKAEA 481
           E   P +L    +      R  + G    +             G++   + +G +     
Sbjct: 448 EATLPGALEEEEEIPEIAVRPPRAGRPGHEGRGERRPGRPRSAGTTQVFVGLGRRAGVRP 507

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           + L+  +   +G+N + IG+I +    + VEV A   D +   +   +G  +K       
Sbjct: 508 QDLVGAITGETGMNGRDIGSIEIADRFSLVEVPAGMADEVISGL---RGSTIKGRRTTVR 564

Query: 542 DFRGYKSSGFKSKNS 556
             R       + ++ 
Sbjct: 565 RDRDTDGGDRRRQHR 579


>gi|269218549|ref|ZP_06162403.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211660|gb|EEZ78000.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 767

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 165/629 (26%), Positives = 278/629 (44%), Gaps = 72/629 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++  P+ +  A+ E G+   T++Q A +   LR +DV+  AQTG+GKT AF L L +
Sbjct: 128 LFDDLGLPEDLLSAVKELGFSAPTAIQAAAIPILLRGRDVVGVAQTGTGKTAAFALPLLA 187

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERR 119
            +  E           AL +APTRELA+Q  + +E   AK+  V  A   GG S   + +
Sbjct: 188 HIDPEKREV------QALVLAPTRELAMQGAQAIESFAAKSRGVDVAAVYGGSSYLPQLK 241

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ D +    L +  ++  VLDEADEML +GF +D+E I    P+ 
Sbjct: 242 ALEGGAQVVVGTPGRIMDLMDRGALRLDAVRYFVLDEADEMLRMGFAEDVEKIASEVPEG 301

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT+ P I  +A+ +  DA  V I+      S +     +V    +  A+  +L
Sbjct: 302 RISALFSATMPPPIRRVAERHLSDAEEVTISRPATTVSTVKQMYAVVPERHKIGALARVL 361

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ A+VF  TR++    T  L        ALSG++ Q+ER   +  +RDG   V +
Sbjct: 362 AVTEAQAALVFVRTRSTAEDLTIELGARGVATAALSGDVVQKEREKLVARLRDGTLDVLV 421

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    +  +HR GRTGRAGR G S+  +    + R  R+
Sbjct: 422 ATDVAARGLDVDRIGLVVNFDVPRETDTYVHRIGRTGRAGRTGESITFVTPKERPRLRRI 481

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR-------------------ILQDPLFLDSIQG-- 398
            ++    +     P+   + +  A+R                   IL+D +   +     
Sbjct: 482 EKQTGSRMEQIELPTPAEVSKLRARRTVEQAMARVAKGRLWVYEEILEDFVAEQAKAAAQ 541

Query: 399 -------DEKKMVDVLLAKHDP---------------------EKIAAGFLRIH--RAGL 428
                  D  +      ++HD                      E +    L +     G 
Sbjct: 542 SGSGAHLDSHEHGSDSYSQHDSHPLSDPGSQLDSKDQAGPVSLETLTMALLALAVRDPGP 601

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
            A EE   ++   G +R        +     R   K S  + + VG K + +   ++  L
Sbjct: 602 VAGEEPERLTEDFGSEREGR----PRKERQPRRQMKNSVRYRVEVGHKDRVKPGAIVGAL 657

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
               G++   +G I + P  + VE+    S +    + +     + +++    G      
Sbjct: 658 THEGGLSGSDLGHIDIFPTFSLVEIGVPLSPEARKRISQARVSGRALKISEDRGP----G 713

Query: 545 GYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           G++    + +  +D       R +G   +
Sbjct: 714 GFRDDAGRGRPRRDSDYSDRGRSRGDRGS 742


>gi|116515159|ref|YP_802788.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257013|gb|ABJ90695.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 576

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 150/576 (26%), Positives = 263/576 (45%), Gaps = 29/576 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
             +F  +   + ++L   GY   + +Q A +   L  KDVL  AQTGSGKT AF L L +
Sbjct: 8   FSVF-GLNSFLLKSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAFALPLLN 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +            P  L + PTRELAVQV +              +   GG     +  
Sbjct: 67  NINIS------LKFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLH 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+VGTPGRL DH++   L++ HL ++VLDEADEML +GF +D+E I+   P+K
Sbjct: 121 ALRRGPQIIVGTPGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+   I  +++ +      + I S      DI     +V    + +A++  L
Sbjct: 181 HQTALFSATMPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSYWIVRGR-KTDALIRFL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+ +    ++ L ++ +   AL+G+++Q  R   L+ +++G+  + I
Sbjct: 240 EVEDFSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDILI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++ ++ E+ +HR GRTGRAGR G ++  +     R  + +
Sbjct: 300 ATDVAARGLDVDRISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKNI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAK-HDPEK 415
            R     +     P  E + E+  Q I   +Q+ L   +++  +  +  + L    + E 
Sbjct: 360 ERIIKHPIHEIQLPKSEILIEKRLQNISNKIQEQLNNKNLKLYKSLLSKLKLKDGWNFEN 419

Query: 416 IAAGFLRIHRA--GLCAPEEITPVSLVSGRDRF----------RDDSRAFKVGGGSRDNF 463
           ++A  L++ +    L  P +     L   R+ F           +          +    
Sbjct: 420 LSAALLKLVQNERPLIIPPDKKSSPLSFKRNSFISFNNQKKYTNNRRFLNNKSNKNYKKM 479

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL--- 520
           +    + + +G   + E R ++  +     I+ + IG IR+  + + +E+          
Sbjct: 480 EDMILYRIDIGRNDRVEVRHIVGAIANEGDISSRLIGNIRLFSNYSTIELPKSYSKHLFT 539

Query: 521 -LRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKN 555
            L  T  L+K I +K +          +    KSK 
Sbjct: 540 RLLHTRILNKPINIKLMSSVVQIKENKRRKFIKSKR 575


>gi|331086825|ref|ZP_08335902.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409991|gb|EGG89426.1| hypothetical protein HMPREF0987_02205 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 529

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 146/537 (27%), Positives = 261/537 (48%), Gaps = 38/537 (7%)

Query: 1   MKI--FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE +     I +A+   G+   + +Q   +   +  KD++  AQTG+GKT AFG+
Sbjct: 1   METLRFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            +   +  +N +         + + PTRELA+QV  E+  L      +  +   GG  + 
Sbjct: 61  PMLEKIDPKNKK------LQGIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIV 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L++G  +++GTPGR+ DH+R K + +  +  V+LDEADEML++GFR+DIE IL+ 
Sbjct: 115 KQIRSLKSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEG 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ ++FSAT+  AI  + K +QK+A  + +  +     +I+     V   +++  +
Sbjct: 175 VPEERQTVLFSATMPKAIMEITKKFQKNAELIKVTKKELTVPNIEQFYYEVKPKNKEEVL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  K +++FC+T+  V      L    +    L G++ Q +R   +Q  R G+ 
Sbjct: 235 TRLLDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKT 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      +
Sbjct: 295 DILVATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-------IQGDEKKMVDVLL 408
            + + R     +  +  PS+  +       +L++   +         I   E+K+ D   
Sbjct: 355 LKEIQRYCKTKIYAQKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAIEEKVNDS-- 412

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             +    +AA FL+++                    +  ++S      G +     G   
Sbjct: 413 -DYTAMDMAAAFLKLYTGM-----------------KDENESEDEFDFGDTGAEEPGMVR 454

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             +++G KQKA    ++  L   SG+  + IG I +    TFVEV  +    +   +
Sbjct: 455 LFINIGKKQKARPGDILGALAGESGMPGKLIGTIDMFDKYTFVEVPKEYARDVLHAM 511


>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
 gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
          Length = 683

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 145/583 (24%), Positives = 259/583 (44%), Gaps = 26/583 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +A+ + G+ + T +QE  +   +   D++  AQTG+GKT AF L + S L  EN
Sbjct: 60  LSPLVLQAIKDLGFESPTPIQERAIPVMMSGDDMIGQAQTGTGKTAAFALPILSKLEPEN 119

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL + PTRELA+QV    +           V   GG S   + R +++GA
Sbjct: 120 KNI------FALVLEPTRELALQVAESFQAFARHIEDFHVVPIYGGASYDNQIRSIRHGA 173

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I    +++S +  +V+DEADEML +GF DD+++IL+ +P +R   +F
Sbjct: 174 QVVVATPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERHTALF 233

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+++    V V I S+    + +  R  +V+   + +A+  IL      
Sbjct: 234 SATMPEAIRRIARDHLNAPVEVRIESKTTTATTVHQRYWVVSGVHKIDAMTRILEVEPYD 293

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         L        AL G++ Q++R   ++ +++G   + IATDVAA
Sbjct: 294 AVLVFVRTKTDAEDVANKLMARGMACAALHGDIPQRQREKIIERLKNGSLDIIIATDVAA 353

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAGR+G ++  +    +R   ++ R    
Sbjct: 354 RGLDVDRITHVFNYDIPYDAESYVHRIGRTGRAGRQGEAILFVSPRERRALRQIERVTRQ 413

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV---------DVLLAKHDPEKI 416
            +     P+V  + +R  +        L++I+  E  M          D  +        
Sbjct: 414 RIEPMRMPTVADVNKRRLENFRNQ--ILETIEAGELGMYLEVVSDILSDDSIEPEMLAAA 471

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG--SSWFSLSVG 474
            A   +   A L       P          R + R          +F       + L+VG
Sbjct: 472 LAKMAQRGNALLLDENGPEPEMRTFDDRHDRRERRLPSAEPVPLRDFPDMKMVRYRLAVG 531

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKG 530
            +   +   ++  +   + ++ + IG I +    + V++     +    +L       + 
Sbjct: 532 HRDGVKPGQIVGAIANEADMDSKYIGEISIFDSFSTVDLPEGMPEETKRVLAAARVCGRA 591

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           + L+    E    R      F +   +D A +   R +    N
Sbjct: 592 LDLREYTAE--PPRRRPPRHFDAPRREDFADEGEYRHEPGDIN 632


>gi|262403840|ref|ZP_06080398.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
 gi|262350344|gb|EEY99479.1| cold-shock DEAD-box protein A [Vibrio sp. RC586]
          Length = 643

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 162/559 (28%), Positives = 274/559 (49%), Gaps = 23/559 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++ Q+          E+  ++V+ L A  + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATTLAAILL 426

Query: 422 RIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +  +             + A E           DR   D  A +  GG          + 
Sbjct: 427 KRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQ 486

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  + 
Sbjct: 487 LQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSNKLRKLR- 545

Query: 531 IQLKYLGGEKPDFRGYKSS 549
           I+ K +G    DF  ++ S
Sbjct: 546 IRQKEVGAVVCDFDDFRES 564


>gi|240172264|ref|ZP_04750923.1| cold-shock DEAD-box protein, DeaD [Mycobacterium kansasii ATCC
           12478]
          Length = 570

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 152/562 (27%), Positives = 260/562 (46%), Gaps = 27/562 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A++  GY + T++Q A +   +   DV+  AQTG+GKT AF + + S +    
Sbjct: 20  IHPSVLRAIAGVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSKIDVT- 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                ++A  AL +APTRELA+QV        A    +  +   GG S   +   L+ GA
Sbjct: 79  -----STATQALILAPTRELALQVAEAFSRYGAYLPKLNVLPIYGGSSYAVQLAGLRRGA 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L++S +  +VLDEADEML +GF +D+E IL  +P+ +++ +F
Sbjct: 134 QIIVGTPGRVIDHLERGTLDLSRVDYLVLDEADEMLAMGFAEDVERILSDTPEYKQVALF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +   Y  D + V   ++     +I  R + VA   + +A+  +L     +
Sbjct: 194 SATMPPAIRKITTKYLHDPLEVTSKAKTATAENISQRYIQVAGPRKMDALTRVLEVEPFE 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR---DGRARVCIATD 302
             IVF  T+ +     + L    F   A++G++ QQ+R   +  +R        + +ATD
Sbjct: 254 AMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQQQRERTITALREGGPNGIDILVATD 313

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + + + 
Sbjct: 314 VAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRPGAALLFVSPRERHLLKAIEKA 373

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHD--PEKIAA 418
              ++     P+VE +  +   +         +  G    +K+V+    +HD     IAA
Sbjct: 374 TRQTMTEAELPTVEDVNAQRVAKFSDSITDALAKPGVALFRKLVEDYEREHDVPMADIAA 433

Query: 419 GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 R G       E  P      +    D     +  G +       S + +SVG +
Sbjct: 434 ALALQSRDGEAFLLAPEPPPERRSETKKPASDQHAEKRRNGPAL------STYRISVGKR 487

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VDLLRRTVKLDKGIQ 532
            K     ++  +    G++R   G I + PD + VE+ A      +  L  T      I 
Sbjct: 488 HKIGPGAIVGAIANEGGLHRSEFGHISIGPDFSLVELPAKLPRATLKKLESTRISGVLIN 547

Query: 533 LKYLGGEKPDFRGYKSSGFKSK 554
           L+   G     R  +    + +
Sbjct: 548 LRR-DGPVKASRYDRGKPRRKR 568


>gi|262174005|ref|ZP_06041682.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
 gi|261891363|gb|EEY37350.1| cold-shock DEAD-box protein A [Vibrio mimicus MB-451]
          Length = 643

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 162/559 (28%), Positives = 274/559 (49%), Gaps = 23/559 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++ Q+          E+  ++V+ L A  + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDATTLAAILL 426

Query: 422 RIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +  +             + A E           DR   D  A +  GG          + 
Sbjct: 427 KRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQ 486

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  + 
Sbjct: 487 LQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRKLR- 545

Query: 531 IQLKYLGGEKPDFRGYKSS 549
           I+ K +G    DF  ++ S
Sbjct: 546 IRQKEVGAVVCDFDDFRES 564


>gi|317124106|ref|YP_004098218.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
 gi|315588194|gb|ADU47491.1| ATP-dependent RNA helicase CsdA [Intrasporangium calvum DSM 43043]
          Length = 605

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 153/586 (26%), Positives = 271/586 (46%), Gaps = 44/586 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + I +A  + GY + + +Q A +   L  +DV+  AQTG+GKT AF L + +
Sbjct: 27  TFADLGLDERILKATRDLGYEHPSPIQAATIPAMLEGRDVVGLAQTGTGKTAAFALPILA 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L  +         P AL +APTRELA+QV    E   A    V  +   GG     +  
Sbjct: 87  RLDLKQ------KTPQALVLAPTRELALQVCEAFERYAANLRGVHVLPVYGGQGYGVQLS 140

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF +D+E IL  +P  
Sbjct: 141 ALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLKMGFAEDVETILADTPAD 200

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+   I  ++K +  D V + + ++     +I  R ++V+   + +A+  IL
Sbjct: 201 KQVALFSATMPAQIRRISKQHLTDPVEITVKAKTTTAPNITQRYLIVSYPQKVDALTRIL 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+       + L    F   A++G++ Q +R   +  +R G+  + +
Sbjct: 261 EVENFEGMIVFVRTKNETETLAEKLRARGFSAAAINGDIVQAQRERTVDQLRSGKLDILV 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 321 ATDVAARGLDVERISHVVNFDIPTDTESYVHRIGRTGRAGRSGDAISFVTPRERHLLKAI 380

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD--P 413
            +     +     P+VE I E    R   D     ++Q ++    +++V   +A++D   
Sbjct: 381 EKATRQGLTEMRPPTVEDINEVRLGRF--DDAITAALQNEQLDLFRQVVSHYVAEYDVPE 438

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVS----------------------LVSGRDRFRDDSR 451
             +AA    + + G     +  P                             DR     +
Sbjct: 439 ADVAAALAIVQQRGEPMLLDPEPEPAPRRGRDRDDRPDRGDRPVRSDRSDRSDRPDRGPQ 498

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +   G R      + + ++VG + +   R ++  L    G+ R+  G I ++ D + V
Sbjct: 499 RDRPDRGPRRGSASFATYRIAVGKRHRVLPRQIVGALANEGGLGREDFGKIDIRGDFSLV 558

Query: 512 EVSADGV----DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKS 553
           E+  +        LR T    + I+L     +    R       + 
Sbjct: 559 ELPQELPASTWQRLRDTRISGQLIELAR-DDKSSGPRAASGRATRP 603


>gi|212692656|ref|ZP_03300784.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|237709374|ref|ZP_04539855.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237725060|ref|ZP_04555541.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265754557|ref|ZP_06089609.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|212664734|gb|EEB25306.1| hypothetical protein BACDOR_02153 [Bacteroides dorei DSM 17855]
 gi|229436798|gb|EEO46875.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456430|gb|EEO62151.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263234671|gb|EEZ20239.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 624

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 180/587 (30%), Positives = 278/587 (47%), Gaps = 21/587 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +         P AL + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQKIEVKK------RVPQALILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K   +  +  VV+DEADEML++GF D I  IL+  
Sbjct: 115 QIRMLKAGVHIIVATPGRLIDLMERKVAKLETIADVVMDEADEMLNMGFTDSINAILEKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  LMFSAT+SP I+ +AK Y  DA  + I ++N    ++++ A LV   D+  A+ 
Sbjct: 175 PEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
             + R  N   +    PS + I E+   +++ D   +     + +     +   L     
Sbjct: 355 REIERIINKKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKLEWLSK 414

Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPV--SLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           E +     +  F R       APE  TP      S R+               R   KG 
Sbjct: 415 EDLIKRVVSMEFNRFLEYYSNAPEIETPSMNDRRSEREPKGRKDHGSAREKTERKAEKGY 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV- 525
           +   L+VG      A  ++ ++ R+    R +IG I +  + +F EV+ +    + + + 
Sbjct: 475 TRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQAQDVIKALN 534

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           K++     K +     D  G   +G +  ++   A+   K  +   K
Sbjct: 535 KVNLNGGRKIVVEVAGDNNGKNDNGERRSSAARNASFGKKGDRSNKK 581


>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
           stomatis DSM 17678]
          Length = 538

 Score =  289 bits (740), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 158/536 (29%), Positives = 253/536 (47%), Gaps = 28/536 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + I  A+ + GY   + +Q   +   +   DV+  AQTG+GKT +F + +
Sbjct: 3   ITKFNELQVSEEIKRAIEDLGYEEPSPIQAQAIPCMIEGHDVIGQAQTGTGKTASFSIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +  +N +        A+ + PTRELA+QV  E+  L     G+      GG  + R+
Sbjct: 63  LENIDRDNRK------LQAIVLCPTRELAIQVSEEVRKLAKYMQGIRTLPIYGGQPIDRQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  + +GTPGR+ DHI  K L +  +K VVLDEADEMLD+GFR+DIE IL + P
Sbjct: 117 IKALKGGVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEMLDMGFREDIETILSNVP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT+  AI  L K YQKD V + +  +    S+I    +    S++   +  
Sbjct: 177 EERQTALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNKLEVLTR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  K  +VF +T+         L    +   +L G+L Q +R   +   R G   +
Sbjct: 237 LLDVYNPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDLKQVQRDIVMDKFRAGTIDI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+E VI+ EL  + E  +HR GRTGRAGR+G++         R+ +
Sbjct: 297 LVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGIAFSFAFGREMRKLK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAK-HDP 413
            + R     +V    PSV  + E+   +  Q   + L   +I    + + D    + +  
Sbjct: 357 DIERYTKSKIVKHDIPSVNDVEEKKVSQFFQGVKETLEEGNIAKHVQWIEDFCNEEDYSM 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             I A  L+         E +        R R                N    +   L+V
Sbjct: 417 IDICAAILKNSMGDEEMQEIVEEAPKSRDRHRL---------------NQSDVTRLFLNV 461

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           G  Q+  A+ ++  +   +GI  + IG I V    TFV+V  +    +   +K  K
Sbjct: 462 GKNQRILAKDILGAIAGETGIRSKFIGNIDVYDKYTFVDVDKNKAREIIEKMKNRK 517


>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
          Length = 557

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 160/547 (29%), Positives = 271/547 (49%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +  +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I S+ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CTPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E+  P+   S     R         R  +         +G +   
Sbjct: 425 LRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|262164855|ref|ZP_06032593.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
 gi|262027235|gb|EEY45902.1| cold-shock DEAD-box protein A [Vibrio mimicus VM223]
          Length = 643

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 162/559 (28%), Positives = 274/559 (49%), Gaps = 23/559 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  HK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++ Q+          E+  ++V+ L A  + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFAELVEKLQASLEIDSTTLAAILL 426

Query: 422 RIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           +  +             + A E           DR   D  A +  GG          + 
Sbjct: 427 KRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTYQ 486

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           L VG  Q  + + ++  L    G+ + SIGAI++    TFV++       +   ++  + 
Sbjct: 487 LQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVSSKLRKLR- 545

Query: 531 IQLKYLGGEKPDFRGYKSS 549
           I+ K +G    DF  ++ S
Sbjct: 546 IRQKEVGAVVCDFDDFRES 564


>gi|70731602|ref|YP_261343.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68345901|gb|AAY93507.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 557

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 160/547 (29%), Positives = 272/547 (49%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + KD   V I S+ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           ++  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHGDLLDRLTADIG-CSPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E+  P+   S     R         R  +         +G +   
Sbjct: 425 LRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGDRERRAPMPLGEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|77917943|ref|YP_355758.1| cold-shock inducible ATP-independent RNA helicase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544026|gb|ABA87588.1| ATP-dependent RNA helicase CsdA [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 156/586 (26%), Positives = 268/586 (45%), Gaps = 28/586 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     I   + E GY   + +Q   + P L  +D+L  AQTG+GKT AF    
Sbjct: 6   LTTFAELSLCPEINRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAAFA--- 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              L   +       +P  L + PTRELA+QV   ++           +   GG ++ ++
Sbjct: 63  ---LPLLSRLDLSLRSPQVLVLTPTRELALQVAEAVQTYARHLQGFHVLPVYGGQNMGQQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ GAH+VVGTPGR+ DH+R   L +  L  VV+DEADEML +GF DD+E IL+ +P
Sbjct: 120 LRQLQRGAHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT+   +  +A+ + ++ V V I ++      I  R   V    + +A+  
Sbjct: 180 EQRQTALFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRKLDALTR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL        IVF  T+ +     + L    F   AL+G+++Q  R   ++ ++ G   +
Sbjct: 240 ILEAEDIDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +    +R   
Sbjct: 300 VVATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLA 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHD- 412
            + +     +     PS + I  R      +    LD++Q  + +     +D +  + D 
Sbjct: 360 AIEQATRQKIAPMKLPSRQDITNRRVALFKEQ--ILDAMQSQDLEFFEDLIDGIQQEFDT 417

Query: 413 -PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            P  +AA    + +       +      V      R D      GGG     +G   + +
Sbjct: 418 EPRTVAAALTYLLQKDRPLLPDEEAFEEVLPASGGRFD------GGGRSHADEGLQRYRI 471

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKL 527
            VG         ++  +   + I+ + IG I++  D + V++ AD     +  L++    
Sbjct: 472 EVGRVHGVVPGHIVGAIANEAKISSRDIGQIKIYHDFSLVDLPADLSPAVMRHLQKVWVC 531

Query: 528 DKGIQLKY-LGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            + +QL   LG      R  +         + G     K+F G  +
Sbjct: 532 GQQLQLVPDLGPGPRQERPPRRRSGGRSFDKRGGKPGRKKFSGGKR 577


>gi|194477246|ref|YP_002049425.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
 gi|171192253|gb|ACB43215.1| putative ATP-dependent RNA helicase [Paulinella chromatophora]
          Length = 631

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 261/566 (46%), Gaps = 38/566 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q A +   +  +D++  AQTG+GKT AF L L + +  + 
Sbjct: 68  LNAEILQAVTEKGYKQPSPIQAAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARMDPDQ 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +P  L +APTRELAVQV        A    +  +   GG     +   L+ G 
Sbjct: 128 ------RSPQVLVLAPTRELAVQVADSFSTYAAHLPHIRVLPVYGGADFRDQINRLKRGI 181

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E+I++  PK+R++++F
Sbjct: 182 QVVVGTPGRVMDHMRQGTLDLSGLRVLVLDEADEMLRMGFIDDVEWIIEQLPKQRQVVLF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  ++ NY  +   + I  +    S I  R ++V    +  A+  +L     +
Sbjct: 242 SATMPTEIRRISLNYLNNPAEITIRQKGSDASRIRQRYLMVHAPHKLEALNRVLEAETGE 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L      V  L+G+++Q +R   ++ +R G   + +ATDVAA
Sbjct: 302 GVIIFGRTKAITVTIAESLELTGHDVAVLNGDVAQSQRERTIERLRKGSINILVATDVAA 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R    
Sbjct: 362 RGLDVDRVSLVINYDIPFDSEAYVHRIGRTGRAGRTGDAILFLTPRERRFLGGLERAVGR 421

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---------HDPEKI 416
            +     PS   I +    R+ Q  + + +      +   +L              P ++
Sbjct: 422 PIEPMDVPSNATINQNRLNRLHQSLVGMINTNKSPSEEEALLAELLFKIGNDLACTPSRL 481

Query: 417 AAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS--------------- 459
           A   L+I      L    +   +    GRD  R   R  +   G+               
Sbjct: 482 ALAALQIAVSPNPLLVQGDEKWLRPAVGRDIDRTGGRERRDRNGNISTNSRGTSQRQNGR 541

Query: 460 -----RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                         F + VG +   +   ++  +   +GI  + IG I++  D + +++ 
Sbjct: 542 RENDFSTTDMHMDHFRIEVGWRDHVKPGNIVGAIANEAGIQGRMIGRIQIFDDYSTIDLP 601

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEK 540
               + + +++K  K +  +     +
Sbjct: 602 KGMPEGVFQSLKYLKVMNKELQISRQ 627


>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 557

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 157/547 (28%), Positives = 273/547 (49%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A++  GY   +++Q+  +   +   D++  AQTG+GKT AF L +   +   
Sbjct: 12  NLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRIDPA 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E+  P+   +     R         R  +         +G +   
Sbjct: 425 LRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|217970097|ref|YP_002355331.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507424|gb|ACK54435.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 677

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 164/604 (27%), Positives = 276/604 (45%), Gaps = 45/604 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL+E GY   + +Q A +   L   D+L  AQTG+GKT AF L + + L   +
Sbjct: 23  LPAPLLSALAEVGYETPSPIQAACIPQLLAGHDILGEAQTGTGKTAAFALPMLAKLDLAD 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R      P  L + PTRELA+QV                +   GG S+  + R L  GA
Sbjct: 83  TR------PQVLVLTPTRELAIQVAEAFAKYAHHLKNFHVLPIYGGQSMVVQLRQLSRGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+  + L +  LKA+VLDEADEML +GF DD+E+IL+ +P +R+  +F
Sbjct: 137 QVVVGTPGRVMDHLERESLKLDALKAIVLDEADEMLRMGFIDDVEWILEHTPAERQTALF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           SAT+   I  +A+ + ++   + I +     + I  R  LV   D+ +A+  I       
Sbjct: 197 SATMPNVIREVARRHLRNPQEIKIRAATSTVAKISQRYWLVRGVDKLDALTRILDAEESF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  T+ +       LA   +   AL+G+++Q  R   ++ +++G   + IATDVA
Sbjct: 257 DAALVFVRTKIATEELADKLAARGYAAAALNGDMNQGLRERVIEQLKNGALDIVIATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ ++  + E  +HR GRTGRAGR+G+++  +     R  + + R   
Sbjct: 317 ARGIDVPRVSHVINYDIPYDTEAYVHRIGRTGRAGREGVAILFVAPRETRMLKMIERATR 376

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL--------------DSIQGDEKKMVDVLLAK 410
             +     PS E +      +  +                   D I  +E ++ +V  A 
Sbjct: 377 QPITPIALPSGEEVTNLRVAQFKRQVAETIAGAELGFFMGVVNDLIDENELEIHEVAAAL 436

Query: 411 HDPEKIAAGFLRIHRAGL-------CAPEEITPVSLV----SGRDRFRDDSRAFKVGGGS 459
               +     L++ ++G           E   P +      + R+R    +R   +    
Sbjct: 437 ALLAQRERP-LQVEQSGRGWDIATTTPSEGRAPRAEHFTTGAARERTPRPNRDEILARRR 495

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
             +      + + VG    A  + ++  +    GI  + IG I +  + + VE+ A+  +
Sbjct: 496 SFSEGALVRYRIEVGRAHGASPKEIVGAIANEGGIEGRFIGQIHLFDEFSTVELPANLPE 555

Query: 520 LLRRTVKLDK----GIQLKYLGGEKP------DFRGYKSSGFKSKNSQDGATKRFKRFKG 569
            L  T+K  +     + ++ L   +               G    ++QDG  +R + F G
Sbjct: 556 DLLATLKRTRVRQMPLSIRELSAAEAATVPERRRPARPERGTDGSHAQDGE-RRPRDFGG 614

Query: 570 ASKN 573
           A  N
Sbjct: 615 ARPN 618


>gi|325663268|ref|ZP_08151718.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470722|gb|EGC73952.1| hypothetical protein HMPREF0490_02459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 529

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 146/537 (27%), Positives = 261/537 (48%), Gaps = 38/537 (7%)

Query: 1   MKI--FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M+   FE +     I +A+   G+   + +Q   +   +  KD++  AQTG+GKT AFG+
Sbjct: 1   METLRFEELGICPEIQKAVKHMGFEEASPIQSKAIPVMMTGKDIIGQAQTGTGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            +   +  +N +         + + PTRELA+QV  E+  L      +  +   GG  + 
Sbjct: 61  PMLEKIDPKNKK------LQGIVLCPTRELAIQVAEEIRNLAKYMHGIKVLPIYGGQEIV 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L++G  +++GTPGR+ DH+R K + +  +  V+LDEADEML++GFR+DIE IL+ 
Sbjct: 115 KQIRSLKSGTQLIIGTPGRVMDHMRRKTIKMEQVHTVILDEADEMLNMGFREDIETILEG 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ ++FSAT+  AI  + K +QK+A  + +  +     +I+     V   +++  +
Sbjct: 175 VPEERQTVLFSATMPKAIMEITKKFQKNAEVIKVTKKELTVPNIEQFYYEVKPKNKEEVL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  +  K +++FC+T+  V      L    +    L G++ Q +R   +Q  R G+ 
Sbjct: 235 TRLLDIYTPKLSVIFCNTKKQVDLLVTALLGRGYFAAGLHGDMKQAQRDRVMQGFRSGKT 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ ++E V + +L  + E  +HR GRTGRAGR G S   +      +
Sbjct: 295 DILVATDVAARGIDVDEVEAVFNYDLPQDEEYYVHRIGRTGRAGRVGRSFSFVSGKEVYK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-------IQGDEKKMVDVLL 408
            + + R     +  +  PS+  +       +L++   +         I   E+K+ D   
Sbjct: 355 LKEIQRYCKTKIYAQKVPSLNDVANTKIDNVLEEIEKMIEKEDLTMMINAIEEKVNDS-- 412

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             +    +AA FL+++                    +  ++S      G +     G   
Sbjct: 413 -DYTAMDMAAAFLKLYTGM-----------------KDENESEDEFDFGDTGAEEPGMVR 454

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
             +++G KQKA    ++  L   SG+  + IG I +    TFVEV  +    +   +
Sbjct: 455 LFINIGKKQKARPGDILGALAGESGMPGKLIGTIDMFDKYTFVEVPREYARDVLHAM 511


>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 559

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/549 (27%), Positives = 263/549 (47%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++           +S  GD    +   +    P  +    
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                   A     I R     P                   R  +         +G + 
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAEGRAR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|71734200|ref|YP_275777.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 570

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/549 (27%), Positives = 263/549 (47%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 23  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 83  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 136

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 137 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 197 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 257 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 317 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 376

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++           +S  GD    +   +    P  +    
Sbjct: 377 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 435

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                   A     I R     P                   R  +         +G + 
Sbjct: 436 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAEGRAR 495

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 496 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 555

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 556 RVAGKQLKL 564


>gi|41408619|ref|NP_961455.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396977|gb|AAS04838.1| DeaD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 149/563 (26%), Positives = 261/563 (46%), Gaps = 24/563 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       + ++A  AL +APTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KID------AASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAH+VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+ 
Sbjct: 128 GLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + +
Sbjct: 248 EVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 308 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAI 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +     +     P+VE +  +   +            G +  +K+V     +HD     
Sbjct: 368 EKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVPMAD 427

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      R          +       + +  + + ++VG 
Sbjct: 428 IAAALAVQSRDGEEFLMAPEPPRERRER------HTERRERTEKPRSTRPLATYRIAVGK 481

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGI 531
           + K     ++  +    G++R   G I + P  + VE+ A      +  L +T      I
Sbjct: 482 RHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGVLI 541

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK 554
            L+         RG      + K
Sbjct: 542 NLQPDRAAAK-ARGRDGGKPRRK 563


>gi|302338831|ref|YP_003804037.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636016|gb|ADK81443.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 542

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 157/565 (27%), Positives = 263/565 (46%), Gaps = 37/565 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +  F+++   Q   +A+ ++G+   T++Q   +   L  + +++  AQTG+GKT AFGL 
Sbjct: 4   ITTFQDLGLSQETLDAIVKKGFEEPTTIQARTIPVMLHSDANIIAQAQTGTGKTAAFGLP 63

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +         +    AL + PTRELA+QV  E+        V +    GG S+ ++
Sbjct: 64  LLDLVDPV------SRTVQALVLVPTRELAIQVSEEINSFRGSKKVRIVPIYGGQSIDQQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ DH+  K LN++ +  ++LDEADEML++GF D++E IL  + 
Sbjct: 118 LRRLKQGVQIVVGTPGRIIDHLNRKTLNLTAISHLILDEADEMLNMGFIDEMEEILKHTN 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +R L+FSAT+   I  LA +Y +    + +  E    +  +     V  SD+  A+  
Sbjct: 178 PDKRTLLFSATMPDKIKKLANDYMEGYELIAVEKEQLTTNLTEQIYFEVKASDKFEALCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+    +   +VFC T+  V      L +  +    L G++SQ +R   L   +     +
Sbjct: 238 IIDIEDSFYGLVFCRTKNDVDTVVNHLLDRGYDAAPLHGDISQAQRERTLGKFKRQNINI 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  VI+  L  +PE  +HR GRTGRAG +G ++  I  +  +R  
Sbjct: 298 LVATDVAARGIDVNNLTHVINYSLPQDPEAYVHRIGRTGRAGNEGTAITFITPSEYKRLM 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDP 413
            + +     +     P V  I +   ++I +D   +F   I           L +    P
Sbjct: 358 FIRKITKTDIKKSQLPKVADIIDAKRKKIDEDLGAIFTKEIDQSYYDWAKRWLEESGKSP 417

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +I A  L +       P     ++ V G DR             S+ +  G++   +++
Sbjct: 418 SQILAALLSLSFNDDLNPNSYGEIAEVRGGDR-------------SQIDHHGTARLFVAL 464

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G K +   R L+ +L   S +  + IG I++  + +FV V     + +    K       
Sbjct: 465 GKKDRITPRQLIDLLTSRSPVRPKQIGDIQIMENFSFVTVPFFLAEKIVAGFKSK----- 519

Query: 534 KYLGGEKP--DFRGYKSSGFKSKNS 556
               G+KP          G + K+ 
Sbjct: 520 ----GKKPLVTRAKSFEGGKRRKHR 540


>gi|15601559|ref|NP_233190.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121588090|ref|ZP_01677839.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121730005|ref|ZP_01682420.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|153819412|ref|ZP_01972079.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|153823796|ref|ZP_01976463.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227812370|ref|YP_002812380.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254849961|ref|ZP_05239311.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|298499594|ref|ZP_07009400.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
 gi|9658230|gb|AAF96702.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547686|gb|EAX57782.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 2740-80]
 gi|121628252|gb|EAX60768.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V52]
 gi|126510058|gb|EAZ72652.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae NCTC 8457]
 gi|126518684|gb|EAZ75907.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae B33]
 gi|227011512|gb|ACP07723.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae M66-2]
 gi|254845666|gb|EET24080.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MO10]
 gi|297541575|gb|EFH77626.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MAK 757]
          Length = 663

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 33  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 93  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 207 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 445

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 505

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 506 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 565

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 566 -IRQKEVGAVVCDFDDFRES 584


>gi|284044842|ref|YP_003395182.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283949063|gb|ADB51807.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 590

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/576 (27%), Positives = 255/576 (44%), Gaps = 40/576 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + + +AL+  GY   T +Q   + P L  +D+L  A TG+GKT AF L + 
Sbjct: 15  TTFADLALRRELLDALTGLGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPIL 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +    A  PLAL + PTRELAVQV   L       G  V    GG  + R+  
Sbjct: 75  QRM----EPGRSAIGPLALVLVPTRELAVQVSEALHRYGRSLGARVLPIYGGQPIGRQLN 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGR+ DHI    L +  L+ VVLDEADEMLD+GF +DIE IL  +P  
Sbjct: 131 ALKRGVDVVVGTPGRVLDHISRNTLRLDELRIVVLDEADEMLDMGFAEDIESILAETPDG 190

Query: 180 RRM---LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R       +          A       + +   +       +   A +VA + +  A+ 
Sbjct: 191 GRQTVLFSATMPPRIDRIARAHLSDPVRIEIARETSAGDTPLVRQSAYVVARAHKPAALG 250

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       AIVFC TR  V + T+ L    ++  AL G ++Q++R   +  +R+G A 
Sbjct: 251 RVLDVESPTAAIVFCRTRDEVDQLTETLNGRGYRAEALHGGMTQEQRDRVMARLRNGTAD 310

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  V++ ++ S+PE+ +HR GR GRAGR+G ++ +      R  
Sbjct: 311 LLVATDVAARGLDVEQLTHVVNYDVPSSPESYVHRIGRVGRAGREGAAITLAEPREHRYL 370

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQ-GDEKKMVDVLLAKHD 412
           + + R     +  E  P+V  +  R  +     L + L  D       + +V+ L  + D
Sbjct: 371 KTIERVTKQRIAIEKIPTVADLHARKLEMTRAALNESLLEDGDDLARFRVVVETLADEFD 430

Query: 413 PEKIAAGFLRIHR----AGLCAPEEITPVSLVSGRDRFRDDSRAFKVG------------ 456
             ++A   +++       G    EEI  V     ++R     R    G            
Sbjct: 431 VMEVALAAVKLAHEASGGGSDDEEEIPDVQPRPFKERGGPSGRGGARGPGGAGGGGGASG 490

Query: 457 -----GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                         ++   +  G       + L+  +   S +  + IGAI +    + V
Sbjct: 491 YRGRHPRGGGPSGPTTRLFVGAGRSAGIRPQDLVGAITGESQLTGREIGAIEISDRFSLV 550

Query: 512 EVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYK 547
           E+ A   D +   V   +G  +K   G K + R  +
Sbjct: 551 EIPAARADEV---VIALRGSTIK---GRKANVRRER 580


>gi|78184980|ref|YP_377415.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78169274|gb|ABB26371.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 624

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 154/553 (27%), Positives = 267/553 (48%), Gaps = 28/553 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+++GY + + +Q+A     +  +D++  AQTG+GKT AF L L   L    
Sbjct: 78  FSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE--- 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              S    P  L +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 135 ---SGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDFRSQISTLRRGV 191

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ S L ++VLDEADEML +GF DD+E+IL+  PK+R++++F
Sbjct: 192 DVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILEQLPKERQVVLF 251

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L+K Y  D   V I ++++    I  RA+ V +S +  A+  +L   G +
Sbjct: 252 SATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEALQRVLDACGGE 311

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L     QV  L+G++ Q +R   ++ +R G   V +ATDVAA
Sbjct: 312 GVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGSVDVLVATDVAA 371

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G +V  +    +R    L R    
Sbjct: 372 RGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERRFIRNLERATGQ 431

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---------KHDPEKI 416
            +     P   AI +    R+ +      +      +   ++           +  PE+I
Sbjct: 432 PIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRVATELQLTPEQI 491

Query: 417 AAGFLRIH--------RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           A   L +         +      +    +    G    R + R  ++   +R   +    
Sbjct: 492 ALAALNLAIGPNGLLRKGDDDWIQNTQRMDRDRGDRGDRGERRERRIDRPARAPEEDMQR 551

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRT 524
           + ++VG + + +   L+  +   +G+  +SIG I++  + + V++      D  + LR  
Sbjct: 552 YRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGMPEDIFNSLRTL 611

Query: 525 VKLDKGIQLKYLG 537
             +++ +Q+    
Sbjct: 612 RVMNRELQITQDS 624


>gi|147671700|ref|YP_001215271.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|153216449|ref|ZP_01950468.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|153802978|ref|ZP_01957564.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|153830498|ref|ZP_01983165.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|254292037|ref|ZP_04962815.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|297580174|ref|ZP_06942101.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
 gi|124114251|gb|EAY33071.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 1587]
 gi|124121501|gb|EAY40244.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae MZO-3]
 gi|146314083|gb|ABQ18623.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|148874031|gb|EDL72166.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae 623-39]
 gi|150422062|gb|EDN14031.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae AM-19226]
 gi|227015452|gb|ACP11661.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae O395]
 gi|297535820|gb|EFH74654.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae RC385]
          Length = 663

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 33  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 93  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 207 SATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 445

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 505

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 506 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 565

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 566 -IRQKEVGAVVCDFDDFRES 584


>gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 559

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/549 (27%), Positives = 263/549 (47%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++           +S  GD    +   +    P  +    
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                   A     I R     P                   R  +         +G + 
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAEGRAR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
           PC909]
 gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 538

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 174/544 (31%), Positives = 272/544 (50%), Gaps = 27/544 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++       +A+ E GYV  + +Q   +   L  KD++  AQTG+GKT AF L +  
Sbjct: 5   TFKDLALSPSTLKAIEEIGYVKPSPIQAEAIPVVLAGKDIIGQAQTGTGKTAAFMLPILE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  +N          AL + PTRELAVQV  E +        V  +   GG S   + R
Sbjct: 65  KIDPKNKNV------QALVLCPTRELAVQVHEESKKFSRNNRDVHILSIYGGQSYDPQIR 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ DH+R   L + +LK +VLDEADEML++GF+DDIE IL+ +P+ 
Sbjct: 119 ALKKGVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEMLNMGFKDDIEEILEKTPES 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT++  I  +AK YQK+   V + SE   +  ID   V V   DR  A++  +
Sbjct: 179 RQTVMFSATMAREIMNIAKTYQKNPEVVKVVSEELSNKKIDQYYVEVKRQDRVQAMIRCI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G  ++IVF +T+  V      L E  +    L G+L Q +R   +   R     + +
Sbjct: 239 DMMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDLKQAQRDRVMNSFRRKNVNILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ ++E V + ++  N EN +HR GRTGRAG  G+S+  +      R  R+
Sbjct: 299 ATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAGMTGLSITFVFGKDMFRIRRI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAK-HDPEKI 416
                  +   P PSVE I+ + +  ++ + +     +    E +++  +L K    E++
Sbjct: 359 EDYTKTKMSKMPIPSVEEIQAKKSTNVIDEIVANLEGKDFSKENELIAAILEKGFTIEQV 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AAG L++               +     ++            ++   K      ++VGSK
Sbjct: 419 AAGLLQM--------------KIGQSTKKYAHIEEVTAGNPKAKGMRKNEVRLFVNVGSK 464

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           QK +A+  + ML + S I  ++IG I V    TF+ V     + + R +   K I  K +
Sbjct: 465 QKVKAKDFVGMLTKKSDIPARAIGDIDVYKKFTFINVDKAHANNIIRKLN-SKLINGKPI 523

Query: 537 GGEK 540
             EK
Sbjct: 524 RAEK 527


>gi|150003861|ref|YP_001298605.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254880913|ref|ZP_05253623.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294775017|ref|ZP_06740546.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|319639922|ref|ZP_07994650.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|149932285|gb|ABR38983.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|254833706|gb|EET14015.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|294451061|gb|EFG19532.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|317388461|gb|EFV69312.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 624

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 179/587 (30%), Positives = 281/587 (47%), Gaps = 21/587 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEILKAIKEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  ++       AP AL + PTREL +Q+  +L        G+ +    GG S+  
Sbjct: 61  LIQKVDVKH------RAPQALILCPTRELCLQIAGDLNDYSKYIDGLKILPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D I  K   +  +  VV+DEADEML++GF D I  IL+  
Sbjct: 115 QIRMLKTGVHIIVATPGRLIDLIERKVAKLETITDVVMDEADEMLNMGFTDSINAILEKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  LMFSAT+SP I+ +AK Y  DA  + I ++N    ++++ A LV   D+  A+ 
Sbjct: 175 PEDRNTLMFSATMSPEISRIAKKYLHDAKEITIGTKNEGSKNVNHIAYLVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIADYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
             + R  N   +    PS + I E+   +++ D   +     + +     +   L     
Sbjct: 355 REIERIINKKFIMGEMPSGKQICEQQLIKLIDDIEKVKVNDEEIESFLPGIYRKLEWLSK 414

Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG--SRDNFKGS 466
           E +     +  F R       APE   P +     +R   + +          R   KG 
Sbjct: 415 EDLIKRVVSMEFNRFLEYYSNAPEIEIPSTNDRRSERGSKERKDHGSAREKTERKAEKGY 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV- 525
           +   L+VG      A  ++ ++ R+    R +IG I +  + +F EV+ +    + + + 
Sbjct: 475 TRLFLNVGKTDGFYANQIIELINRNMKKQRTTIGRIDLMQNFSFFEVAENQAQDVIKALN 534

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           K++     K +     D  G   +G +  ++   A+   K  +   K
Sbjct: 535 KVNLNGGRKIVVEVAGDNNGKNDNGERRSSAARNASFGKKSDRSNKK 581


>gi|227548399|ref|ZP_03978448.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079443|gb|EEI17406.1| superfamily II helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 683

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 157/570 (27%), Positives = 274/570 (48%), Gaps = 43/570 (7%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  +  A+   G+   + +Q   +   +  +DV+  AQTG+GKT AF L + S 
Sbjct: 106 FEKLDLPDSVIAAVKMVGFEQPSPIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPVLSQ 165

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  +         P AL +APTRELA+QV    +      G +  +   GG +   +   
Sbjct: 166 IDPQ------LRHPQALVLAPTRELALQVADSFQSFADHLGKIQVLPIYGGQAYGIQLSG 219

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P  +
Sbjct: 220 LRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPNTK 279

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT+   I  ++K Y  D   V + SE R +++I  R +  A  ++ +AI  IL 
Sbjct: 280 QVALFSATMPNGIRKISKQYLNDPAEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILE 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  IVF  T+       + L    F   A++G+++QQ+R   +  +RDGR  + +A
Sbjct: 340 VTEFEAMIVFVRTKHETEELAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + 
Sbjct: 400 TDVAARGLDVERISHVFNYDIPNDIESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIE 459

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD------PE 414
           R  N ++     P+V+ + E    + +       S++  ++ +   ++ ++        +
Sbjct: 460 RVTNATIEEMELPTVDEVNESRKLKFMDS--ITASLESKDQDVFKAMVREYSNTNNIPMD 517

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR----------------------DRFRDDSRA 452
            IAA       A      +  P      R                      +R     R 
Sbjct: 518 DIAAALAAQANAAGEFLMKEPPKDKRDRRDRDGWDRDDRRDRDRGGRRDRFNRGDRGDRG 577

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            + G G +++ +    + L VG +Q      ++  L    G+N +  G I +  D T VE
Sbjct: 578 DRGGRGRQNDSENFDTYRLDVGKRQHVRPGAIVGALANEGGLNSRDFGRITIGGDFTLVE 637

Query: 513 VSAD----GVDLLRRTVKLDKGIQLKYLGG 538
           +  +     +D L  T    + I ++   G
Sbjct: 638 LPKNLDSSVLDRLSDTRISGQLINIQRDKG 667


>gi|229506042|ref|ZP_04395551.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229510102|ref|ZP_04399582.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229517768|ref|ZP_04407213.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229605573|ref|YP_002876277.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
 gi|229345804|gb|EEO10777.1| cold-shock DEAD-box protein A [Vibrio cholerae RC9]
 gi|229352547|gb|EEO17487.1| cold-shock DEAD-box protein A [Vibrio cholerae B33]
 gi|229356393|gb|EEO21311.1| cold-shock DEAD-box protein A [Vibrio cholerae BX 330286]
 gi|229372059|gb|ACQ62481.1| cold-shock DEAD-box protein A [Vibrio cholerae MJ-1236]
          Length = 653

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 160/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 23  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 83  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 137 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 197 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 257 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 317 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 376

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 377 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 435

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 436 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 495

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 496 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 555

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 556 -IRQKEVGAVVCDFDDFRES 574


>gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 557

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 157/549 (28%), Positives = 274/549 (49%), Gaps = 25/549 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +   I  A+   GY   +++Q+  +   +   D++  AQTG+GKT AF L +   + 
Sbjct: 11  FE-LHPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRID 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQ 122
                      P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++
Sbjct: 70  PSK------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIR 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NGA IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ ++ 
Sbjct: 124 NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L   
Sbjct: 184 VLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVE 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATD
Sbjct: 244 DFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R 
Sbjct: 304 VAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERV 363

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
               V     P  +A+ +   +++           +S  GD    +   +    P  +AA
Sbjct: 364 TGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAA 422

Query: 419 GFLRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSW 468
             LR    G    L A E   P+   +     R         R  +         +G + 
Sbjct: 423 ALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAEGRAR 482

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 483 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 542

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 543 RVAGKQLKL 551


>gi|119502760|ref|ZP_01624845.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119461106|gb|EAW42196.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 582

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 150/571 (26%), Positives = 254/571 (44%), Gaps = 44/571 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L   GY   T +Q   +   L  +DV+  AQTG+GKT AF L + + +  + 
Sbjct: 16  LPDFLQENLQSLGYETATPIQAGTIPLLLEGRDVVGLAQTGTGKTAAFALPILANIDVK- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
                  +P AL + PTRELA QV           G   +    GG  + ++ + L+ G 
Sbjct: 75  -----VRSPQALVLCPTRELAQQVAEAFRSYGRGMGGLRILSIFGGADMRQQLKSLREGT 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHI  + ++++ + AVVLDEADEML +GF DD++ IL  +PK+R++ +F
Sbjct: 130 HIVVATPGRLLDHIERRSIDLTGINAVVLDEADEMLRMGFIDDVDTILAKTPKERKVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A  +  +   +++A+    + +I+    L   + +  A+  +L +   +
Sbjct: 190 SATMPKRVRDIANKHLSNPAEISVAAAATTNENIEQCYWLAKGASKLEALKRLLAFEDTE 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR S +   + L +   +   L+G++ Q+ R   +  ++ G   V +ATDVAA
Sbjct: 250 GVIVFTRTRESTTVIAEQLRQTGLKASPLNGDMDQKMRLRTVSDLKSGALDVLVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E  +HR GRTGRAGRKG ++  +    +R    + R    
Sbjct: 310 RGLDVERITHVINYDVPFDEEAYVHRIGRTGRAGRKGKAILFVVPRERRMLRNIERLTRQ 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           S+     PSV AI  +  +           D +Q + ++++D L    D   IA     +
Sbjct: 370 SIPEIKLPSVLAIDAKRREAFADSIRTALADPMQAELEEIIDTLNKDSDYRSIAVALAGM 429

Query: 424 HRA-------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------------ 458
             +            E+ TP      RD         +   G                  
Sbjct: 430 LHSPGASKGPKHAKGEKHTPYGTRDARDEKSSKPNRKERRQGLQKKAATSESETPSAPKN 489

Query: 459 ----------SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDL 508
                               F + VG K   +   LM  +   +GI  Q IG I +  + 
Sbjct: 490 EKHLGEARPLRDHPDVPMERFRVEVGRKHGVKPGELMGAIANEAGIEGQYIGMINILEEC 549

Query: 509 TFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           + +++       + + +K  +   +    G 
Sbjct: 550 STIDLPEGIPKSILKHLKKTRVKGVHLAMGR 580


>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
 gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 562

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 156/553 (28%), Positives = 269/553 (48%), Gaps = 31/553 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPT 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++      L    +S  GD    +   +    P  +    
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDNFK 464
                   A     I R     P    P      R    DR     R  +         +
Sbjct: 425 LRKATNGQALTLAAIERDRPLVPNN-APRGDRPERSGSSDRGDRGDRPERERRAPVPLAE 483

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 484 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 543

Query: 525 VKLDK--GIQLKY 535
           +K  +  G QLK 
Sbjct: 544 LKDTRVAGKQLKL 556


>gi|307249783|ref|ZP_07531761.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858198|gb|EFM90276.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 596

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 153/602 (25%), Positives = 264/602 (43%), Gaps = 52/602 (8%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L + +            P  
Sbjct: 1   MGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK------RHPQM 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L +APTRELA+QV    E        V  V   GG     + R L+ G+ +VVGTPGR+ 
Sbjct: 55  LVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  +
Sbjct: 115 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + + +D   V I +  R   DI     LV    +++A++  L       AI+F  T+  
Sbjct: 175 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
               T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV
Sbjct: 235 TIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +       +     P+ E
Sbjct: 295 VNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHE 354

Query: 377 AIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
            +  +  ++    +   L    ++   + + D+  A  D E++AA  + + +        
Sbjct: 355 ILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMMLQEKQKLILP 414

Query: 434 ITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
             P               DR               +N      + + +G +   E R ++
Sbjct: 415 PDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDLYRIELGREDGVEVRHIV 474

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLDKGIQLKYLG--- 537
             +     I+ + IG I++    + +E+     + +     ++   L+K +Q+  LG   
Sbjct: 475 GAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQKARVLNKQMQMSLLGPAG 534

Query: 538 --GEKP------------------------DFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
               +P                             +  GF  +       KRF       
Sbjct: 535 GVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDRKKGGFKEKRFNDKGRGR 594

Query: 572 KN 573
           ++
Sbjct: 595 RD 596


>gi|146282848|ref|YP_001173001.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145571053|gb|ABP80159.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
          Length = 553

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/553 (29%), Positives = 281/553 (50%), Gaps = 24/553 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A+S  GY   + +Q   +   L   D++  AQTG+GKT AF L + S +    
Sbjct: 13  IHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPAK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++ GA
Sbjct: 73  ------REPQALILAPTRELALQVATAFETYSKQMPGVSVVAIYGGAPMGPQLKAIRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+      +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + ++   + IA++ +  + I+   ++V    +  A++ +L      
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R  N 
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ + + +   +++     PL  D+ +    +++D L+A     P  +AA  L
Sbjct: 367 KVAEARLPNAQQVLDARIKKLTSSLAPLVADA-ETTHGELLDKLVADIGCSPRALAAALL 425

Query: 422 RIHRAG----LCAPEEITPVSLVSG-RDRFRDDSR-AFKVGGGSRDNFKGSSWFSLSVGS 475
           R    G    L   E+  P+   SG R+R     R   +         +G +     +G+
Sbjct: 426 RKATNGQALTLAEVEKEQPLVPTSGPRERSDRPERSGDRERRAPVPLAEGRARCRTPLGA 485

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           +    AR L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K         
Sbjct: 486 RDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKD------TR 539

Query: 536 LGGEKPDFRGYKS 548
           +GG++   R Y+ 
Sbjct: 540 VGGKQLKLRRYRE 552


>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
 gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
           pv. tomato T1]
          Length = 573

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 156/553 (28%), Positives = 269/553 (48%), Gaps = 31/553 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 23  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPT 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 83  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 136

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 137 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 197 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 257 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 317 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 376

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++      L    +S  GD    +   +    P  +    
Sbjct: 377 QKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 435

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDNFK 464
                   A     I R     P    P      R    DR     R  +         +
Sbjct: 436 LRKATNGQALTLAAIERDRPLVPNN-APRGDRPERSGSSDRGDRGDRPERERRAPVPLAE 494

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   
Sbjct: 495 GRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTK 554

Query: 525 VKLDK--GIQLKY 535
           +K  +  G QLK 
Sbjct: 555 LKDTRVAGKQLKL 567


>gi|86159465|ref|YP_466250.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775976|gb|ABC82813.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 565

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 238/565 (42%), Positives = 331/565 (58%), Gaps = 8/565 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     +  AL  RGY   T+VQEA+  P LR +D+LVS+ TGSGKTVAFGL L  
Sbjct: 2   TFTELGAHPALARALERRGYSEPTAVQEAVFTPGLRGRDLLVSSATGSGKTVAFGLVLGG 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +LL +   F PA  PL L +APTRELA+QV REL WL A+    V  C+GG+   RE R 
Sbjct: 62  SLLGDAPAFGPAGLPLGLVVAPTRELAMQVQRELAWLLAEAEGRVVACVGGMDARREARA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+VVGTPGRL DH R   L++S L+A+VLDEADEMLD+GFRD++E IL ++P+ R
Sbjct: 122 LSDGAHLVVGTPGRLLDHHRRGALDLSDLRALVLDEADEMLDMGFRDELEAILAAAPEGR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R +MFSAT+   I  LA+ Y  D  RV        H+DI +RA LVA S+R+ A+VN+LR
Sbjct: 182 RTIMFSATLPKPIVELARRYTTDPARVAATPAGGAHADIAFRAHLVAPSERELAVVNVLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF +TR +       L+E  F  V +SGEL+Q ER+ AL  +RDGRARV +A
Sbjct: 242 ALEPPRALVFRATREAAHHTASSLSERGFAAVPISGELTQAERNRALVALRDGRARVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLP L+LV+HA+L  +P  L HRSGRTGRAGRKG++V +     + + ER+ 
Sbjct: 302 TDVAARGLDLPGLDLVLHADLPRDPAALQHRSGRTGRAGRKGLAVLLAAPPERYKLERML 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           R+A V V W P P+ E+IR  D  R+  +     + +  DE+     LL+  DP  +AA 
Sbjct: 362 RDAGVRVEWAPVPAAESIRAADDARLAGEVDALSEDVSDDERAAAARLLSGRDPLLVAAA 421

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +R  RA L +PE++T  +  + +       RA + G  +       +WF +++G ++KA
Sbjct: 422 LVRTTRARLPSPEDLTETAHAARQAPAPRADRAPRRGPPAEV-----AWFRINIGREKKA 476

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           + +WL+P+LCR  G+ R  IG I +    T  EV+           +             
Sbjct: 477 DPKWLLPLLCRRGGVTRDEIGKIVIGAAETRFEVARAAATQFGAAARRPDPRAPGVRIEP 536

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRF 564
             + RG+      +   +    +R 
Sbjct: 537 VREVRGHGEHRAAAGGERPPRARRP 561


>gi|229514239|ref|ZP_04403700.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
 gi|229522353|ref|ZP_04411769.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229528334|ref|ZP_04417725.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229334696|gb|EEO00182.1| cold-shock DEAD-box protein A [Vibrio cholerae 12129(1)]
 gi|229340338|gb|EEO05344.1| cold-shock DEAD-box protein A [Vibrio cholerae TM 11079-80]
 gi|229348219|gb|EEO13177.1| cold-shock DEAD-box protein A [Vibrio cholerae TMA 21]
          Length = 653

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 23  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 83  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 137 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 197 SATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 257 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 317 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 376

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 377 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 435

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 436 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 495

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 496 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 555

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 556 -IRQKEVGAVVCDFDDFRES 574


>gi|229526685|ref|ZP_04416089.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
 gi|229336843|gb|EEO01861.1| cold-shock DEAD-box protein A [Vibrio cholerae bv. albensis VL426]
          Length = 651

 Score =  288 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 23  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 83  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 137 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 197 SATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 257 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 317 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 376

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 377 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 435

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 436 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 495

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 496 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 555

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 556 -IRQKEVGAVVCDFDDFRES 574


>gi|320355280|ref|YP_004196619.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320123782|gb|ADW19328.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 552

 Score =  288 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 167/531 (31%), Positives = 266/531 (50%), Gaps = 22/531 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + ++E G+ + T +Q+A +   L  +D++  AQTG+GKT AFGL L   +    
Sbjct: 11  LHPDLVQTVTELGFTDPTPIQQAAIPLLLEGRDLIGQAQTGTGKTAAFGLPLLQRITPRQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA+QV   ++    + G+ V    GG +  ++ R L+ G  
Sbjct: 71  Q------GVQALVLAPTRELAIQVAEAIQRYGQQRGITVLAVYGGQAYQQQIRSLRQGVE 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGRL D +    L+++ ++ VVLDEADEML +GF +DIE ILD  P +R+ ++FS
Sbjct: 125 VIVGTPGRLLDLMNQGTLDLTTVRTVVLDEADEMLSMGFVEDIELILDRIPAERQTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  L+  Y +D   V+I  +    + I+ R  LV   D+  A+  +       +
Sbjct: 185 ATISKRVLGLSARYLRDPETVSITPKQLTGATIEQRYYLVNQQDKVAALTRLFEMETIDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  TR         L    F   AL+G+LSQ  R   L   R+G+ +V +ATDVAAR
Sbjct: 245 ALIFTRTRIGTGELANQLTSRGFPAEALNGDLSQDARIQVLNRFRNGQVKVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V + +L  +PE  +HR GRTGRAGR+G+++ ++    +    R+   A   
Sbjct: 305 GLDIDDISHVFNFDLPDDPEVYVHRVGRTGRAGREGIAISLLTPKDRWILRRIEDYARYK 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLR 422
           +     P+++ I E   Q +L + L           E+++V++LL   H  E IAA  L+
Sbjct: 365 LTRAELPTIQQI-ENHRQALLMEQLEVWIRRGRCRREREVVEMLLQTGHQAEDIAAAALK 423

Query: 423 IHRAGL--CAPEEITPVSLVSGRDRFRDDSRAFKV---------GGGSRDNFKGSSWFSL 471
           + R        + ITP+       R R + R  +          G    D  +      L
Sbjct: 424 LARGEEKKRPIDPITPIKEEQFNPRERKNDRFPRRGGQAGTGPGGRRGHDRDRDMVPLRL 483

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +VG         ++  L   SG+    +G IR++ D T V+V    V  L 
Sbjct: 484 NVGRADGVGVNHVVASLAHYSGVAAVQLGKIRLEADHTLVDVPEPLVGRLL 534


>gi|225022855|ref|ZP_03712047.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944379|gb|EEG25588.1| hypothetical protein CORMATOL_02901 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 715

 Score =  288 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 161/561 (28%), Positives = 269/561 (47%), Gaps = 41/561 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+   G+   + +Q   +   L   DVL  AQTG+GKT AF L + S + AE 
Sbjct: 86  LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAE- 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDLQNG 124
                   P AL +APTRELA+QV    +         ++V       +   +   L+ G
Sbjct: 145 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 199

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+++++ +
Sbjct: 200 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEEKQVAL 259

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y  D   + + SE R +++I  R + VA  ++ +A+  IL     
Sbjct: 260 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 319

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+       + L    F   A++G+++QQ+R   ++ ++DGR  + +ATDVA
Sbjct: 320 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 379

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 380 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 439

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAA 418
             +     P+V+ + E    +        +S++  +    + +V     +HD   E IAA
Sbjct: 440 APLQEMELPTVDEVNESRKAKFADS--ITESLENTQVAVFRNLVKTYSEQHDVPLEDIAA 497

Query: 419 GFLRIHRAGLCAPEEITPVS---------------------LVSGRDRFRDDSRAFKVGG 457
                 RAG        P                            DR    +R  + G 
Sbjct: 498 ALATQARAGDEFLMTEPPAEKRRNRRDRDRNDRGDRGYDRFDRDRDDRRGGYNRGDRGGR 557

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----V 513
                 +    + L+VG +Q      ++  L    G++ +  G I +  D T VE    +
Sbjct: 558 RFDRGSQDMETYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIGSDFTLVELPKGL 617

Query: 514 SADGVDLLRRTVKLDKGIQLK 534
                D LR T    + I ++
Sbjct: 618 PKSVFDNLRDTRISGQLIHIE 638


>gi|255746441|ref|ZP_05420388.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262148974|ref|ZP_06028121.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
 gi|255736195|gb|EET91593.1| cold-shock DEAD-box protein A [Vibrio cholera CIRS 101]
 gi|262031252|gb|EEY49869.1| cold-shock DEAD-box protein A [Vibrio cholerae INDRE 91/1]
          Length = 643

 Score =  288 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 160/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 425

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 426 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 485

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 486 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 545

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 546 -IRQKEVGAVVCDFDDFRES 564


>gi|261878837|ref|ZP_06005264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
 gi|270334579|gb|EFA45365.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           bergensis DSM 17361]
          Length = 632

 Score =  288 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 163/586 (27%), Positives = 271/586 (46%), Gaps = 22/586 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+VN   VQE ++   L +  DV+  AQTG+GKT AFG+ 
Sbjct: 1   MKTFEELGVSEEIRRAIDELGFVNPMPVQEEVIPYLLGQGNDVIALAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L                  AL ++PTREL +Q+  +L        G+ +    GG S+  
Sbjct: 61  LLQRTDPTKKE------TQALILSPTRELCLQIADDLNAFAKYMDGMHILPVYGGASIEA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D +      + ++  VVLDEADEML++GF D I  + +  
Sbjct: 115 QIRSLRHGVQIIVATPGRLIDLMNRGVAKLDNVSNVVLDEADEMLNMGFTDSINAVFEGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+   I  +AK+Y  D   + + S N    ++++   +V   D+  A+ 
Sbjct: 175 PRDRNTLLFSATMGKEIEKIAKSYLNDYKEIVVGSRNEGAENVNHVYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     IVFC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDYYPNIYGIVFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRKHITQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSIAIIHTREKHKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
             + +      V +  P+ E I ++   +++ + +  D  +      V  +  +    D 
Sbjct: 355 RSIEKIIGKEFVDDELPAPEEICKKQLYKMMNNIMKTDVDEEQIAPYVTEIYRQFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPV----SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           E I    + +         +  PV    S   G  +     R        R    G    
Sbjct: 415 EDIIKKMITVTFGRFLDYYKNAPVIEKPSTKRGERKAERGERGASRKDRKRGAEAGYRRL 474

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD- 528
            +++G +       +M  + +     +Q +G I +    +++EV       + R++    
Sbjct: 475 FINLGKQDGFYPGEIMQFMNQHIH-GKQQVGHIDLMQRFSYIEVPEQDAQKVIRSLNGTS 533

Query: 529 -KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +G +++    E     G  S G +  +     + R  R  GA++N
Sbjct: 534 YRGREVRCNDAEDSRGSGAASRGGRGASRSVRNSSRGSR--GAARN 577


>gi|95928576|ref|ZP_01311323.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135366|gb|EAT17018.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 587

 Score =  288 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 155/567 (27%), Positives = 267/567 (47%), Gaps = 20/567 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +AL++ GY   + +QE  +       ++L +AQTG+GKT AFGL L   +    
Sbjct: 11  IASPLLQALTDLGYQQPSPIQEQSIPILNEGHNLLGTAQTGTGKTAAFGLPLLGKIDPSK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV   L+        V  +   GG  ++++ + L +G 
Sbjct: 71  ------KYPQMLVLAPTRELAIQVSEALQSFAKYLPKVKVLAVYGGQPMYQQLKALHDGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+  K L +  + AVVLDEADEML +GF +D+E IL ++P + +  +F
Sbjct: 125 QVVVGTPGRIMDHMERKSLRLEQISAVVLDEADEMLRMGFIEDVETILGATPPRCQCALF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+ Y  DA  V IAS       I+ R +++  + + + +  ++      
Sbjct: 185 SATMPPAIRRVAERYLGDAQEVQIASRTSTVDQIEQRYLMLRANQKFDVLTRLIEAQEID 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+ + +   + L    +    L+G+LSQQ R   +  +++G   + IATDVAA
Sbjct: 245 GTIVFVRTKTATTELAERLEARGYNAAPLNGDLSQQVRERTIGRLKNGSLDIVIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E  +HR GRTGRAGR G ++  +    +R  + + R    
Sbjct: 305 RGLDVERISHVFNYDIPFDTEAYIHRIGRTGRAGRTGTAILFVTPQERRLLKSIERATKR 364

Query: 366 SVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAGF 420
            +     P+ + I  R     ++ + D L   S+  D ++++  ++ +   E   +AA  
Sbjct: 365 DIKPIDVPTSDQIGARRIATFKKQIHDTLDQYSL-ADLRELLTTMVEEDGLELLDVAAAL 423

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
               +       +++ + L S  DR    +   K       N      + +SVG +    
Sbjct: 424 AYRQQMQKTLFPKLSNIQLPSLDDRKSRSASERKSRDRG--NAPPMYRYRISVGRRHNIT 481

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYL 536
            R ++        +    IG I +  + + VE    + A  ++ L +       I+L  L
Sbjct: 482 PRDIVGAFSNEGRVQIGFIGRISLYNEHSTVELAQSLPAKVIEKLNKIQLRHHEIKLHKL 541

Query: 537 GGE-KPDFRGYKSSGFKSKNSQDGATK 562
                 D R        ++  +  A K
Sbjct: 542 DDHTASDERKPAKKKGPARPERGRAAK 568


>gi|66046848|ref|YP_236689.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 557

 Score =  288 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 157/547 (28%), Positives = 272/547 (49%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E   P+   +     R         R  +         +G +   
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 544

 Score =  288 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 154/545 (28%), Positives = 273/545 (50%), Gaps = 17/545 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+ + G+ + + VQEA +   L  +DVL  AQTG+GKT +FG+ +   +  +
Sbjct: 7   NLSKEVLQAIDDMGFESPSEVQEATIPLILEGRDVLAQAQTGTGKTASFGIPMIEGIEDK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           +           L + PTRELA QV  EL+ L      +  V   GG  + ++ RDL+ G
Sbjct: 67  SHN------LQGLVLVPTRELARQVSDELKKLAKYKKFISIVPIYGGADMGKQLRDLKKG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH++ K + +  LK + LDEADEM D+GFRDD++ I++ +   R+ L 
Sbjct: 121 ADIVVGTPGRVMDHMKRKTIVLDDLKFLTLDEADEMFDMGFRDDMKTIIEKTNPDRQTLF 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I   ++ YQ D  +V I  +      I+   + +  + +   +  ++  H  
Sbjct: 181 FSATFDNDIKEFSRLYQVDPAKVIIEKKELTAEKIEQFYLELNRNMKTEILNRLILIHKP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +I+FC+T+  V      +A+  ++V +L G++ Q  R N ++  R+G   V IATDVA
Sbjct: 241 KKSIIFCNTKRMVEALELEIAQRGYKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D++LV + +L    E  +HR GRT RAG+KG S   +      + + + + AN
Sbjct: 301 ARGLDVSDIDLVFNYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRDYPKFKEIEKYAN 360

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAG 419
             +     P+   + +     +  D +  + I+ ++++    +L K     H    I+A 
Sbjct: 361 TKMEKMKLPTKSDVEKESLDNLF-DKVNKNIIRAEDQENYTEVLNKLLAEGHSLYDISAS 419

Query: 420 FLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            L++ +        +++  V    G +  R+   + +                ++ G + 
Sbjct: 420 LLKMVKESTNKTKIKDLDRVDYGKGFEMSRESDSSKRKSKDKGMKKIKGPKIFINKGKRD 479

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQLKY 535
             ++R ++ +L + + +    IG I + P+ +FVE+    +    R +  K  KG  +K 
Sbjct: 480 GLDSRDIIKLLGKHTDLAPSDIGRINIMPNFSFVEIPKKMIKDAIRDIDGKSLKGKSIKA 539

Query: 536 LGGEK 540
              EK
Sbjct: 540 EYSEK 544


>gi|154249323|ref|YP_001410148.1| DEAD/DEAH box helicase domain-containing protein [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153259|gb|ABS60491.1| DEAD/DEAH box helicase domain protein [Fervidobacterium nodosum
           Rt17-B1]
          Length = 571

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 150/569 (26%), Positives = 281/569 (49%), Gaps = 22/569 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALAS 60
           FE+  + + I  A+ ++GY   T +Q+ +L   L  +KD++  AQTG+GKT AFG+ L  
Sbjct: 20  FEDFGLSEEILLAIQKKGYEKPTEIQKIVLPYALSTDKDLIAQAQTGTGKTAAFGIPLLE 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + ++F       A+ + PTRELA+Q+  EL+ L     V +    GG S+ ++ +D
Sbjct: 80  RIDFKANKF-----VKAIIVTPTRELALQIFEELKSLKGTKRVKITTLYGGQSLEKQFKD 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DH+    L++SH++ +VLDEAD MLD+GF DD+  I+  + + +
Sbjct: 135 LEKGVDIVVGTPGRIIDHLNRDTLDLSHVEYLVLDEADRMLDMGFLDDVLEIIKRTGENK 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSAT+   I  +A+ + K+ + V+   +     + +     V   D+   +  I+ 
Sbjct: 195 RTFLFSATMPKEIVDIARKFMKEYIHVSTVKDELTTENAEQLYFEVDEKDKLPLLCRIID 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     IVFC T+  V   +K L +  +    L G+ SQ +R   L   R  + R+ + 
Sbjct: 255 MNPDFYGIVFCQTKLEVDEISKKLLDLGYNADGLHGDYSQYQRERVLDKFRKKQLRILVT 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI+  +  +PE  +HR GRTGRAG+KG ++  + ++      R+ 
Sbjct: 315 TDVAARGIDIDGLTHVINYSVPRDPEYYVHRIGRTGRAGKKGFAITFVTRDDYFHFARVK 374

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKIAAG 419
           R A   ++ +  P VE I  R  +++L        +  +  K+    ++ +  P +    
Sbjct: 375 RFAKAKIIKDSIPQVEDILNRQLEKLLDTLKNAPKVSNELYKRAAQQIIEEMGPTEAVEM 434

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L          ++I        + +     R    G  +++   GS    +++GS +  
Sbjct: 435 LL-----HTLIKDKIDVSRYGDVKPKNFSKGREQNFGDSNKNVDSGSVRLFVNMGSSKGL 489

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
           + + L+  +   +G+   +I  ++V  + +F++VS    +++ +T+   +G         
Sbjct: 490 DKKKLVEFISERTGVEPSNINNVKVFENFSFIDVSEFDAEVILKTLNPKRGKN------- 542

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
               +       + + +++    + ++ +
Sbjct: 543 -SRSKPLVERAREKRENRENRESKERKSR 570


>gi|170760570|ref|YP_001788120.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 524

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 146/527 (27%), Positives = 261/527 (49%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S+L     +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SSLCDNEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+P++
Sbjct: 120 DIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+  AI  LA NY K+ V       ++     I      V   D+  AI  I
Sbjct: 180 KQTMLFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERITKSKITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                          ++   +      LSVG
Sbjct: 418 QVSAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +   + +    IG I +    TF++VS+   + +
Sbjct: 455 RKDSINVKSLLTFIQDEASVRNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|153827325|ref|ZP_01979992.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262169080|ref|ZP_06036773.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262190964|ref|ZP_06049177.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
 gi|149738767|gb|EDM53109.1| cold-shock deAd box protein a [Vibrio cholerae MZO-2]
 gi|262022361|gb|EEY41069.1| cold-shock DEAD-box protein A [Vibrio cholerae RC27]
 gi|262033168|gb|EEY51693.1| cold-shock DEAD-box protein A [Vibrio cholerae CT 5369-93]
          Length = 643

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 161/560 (28%), Positives = 272/560 (48%), Gaps = 25/560 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 73  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 367 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 425

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 426 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 485

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++     + +   ++  +
Sbjct: 486 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 545

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 546 -IRQKEVGAVVCDFDDFRES 564


>gi|150400366|ref|YP_001324133.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           vannielii SB]
 gi|150013069|gb|ABR55521.1| DEAD/DEAH box helicase domain protein [Methanococcus vannielii SB]
          Length = 538

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 155/534 (29%), Positives = 273/534 (51%), Gaps = 14/534 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F N+   + I  AL ++G+   T +QE  +   ++   D++  AQTG+GKT AFGL 
Sbjct: 1   MDSFRNLGLSEDIINALEKKGFTEPTPIQEKAIPILIKGEMDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+       + +    AL + PTRELA+QV  E++ L     + +    GG S+ R+
Sbjct: 61  IIETID------TNSRNTQALILTPTRELAIQVAEEIDSLKGSRRLNIFPVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L+ G  IVVGTPGR+ DHI  + + + ++  VVLDEADEML++GF DD+E IL S  
Sbjct: 115 IKELKRGVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVN 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML+FSAT+  +I  LA+NY +D   + +  +    +  D     ++  D+   +  
Sbjct: 175 TEKRMLLFSATLPDSIMKLAENYMRDYETIKVKKQQLTTNLTDQSFYEISPRDKFELLSR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        ++FC T+A V   +  L E  +    L G+++Q +R   L   +  R  V
Sbjct: 235 IMDTEKEFYGLIFCKTKADVDDLSARLVERGYPAEGLHGDMTQAQREKTLDKFKRRRTTV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  V++ +L  NPE+ +HR GRTGRAG++G ++  +  +  R+ +
Sbjct: 295 LVATDVAARGIDINELTHVVNYDLPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQ-GDEKKMVDVLLAKHDPEK 415
            + + A   +  E  P ++ +     ++I  D    ++S + G+ +KM + LL + + + 
Sbjct: 355 YILKIAKTEIRREEVPDIKDVIGAKRRKIKTDIKTLMESGKFGEYEKMAEELLEEGEAKD 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L+         E    +   S            +     +     +    +++G 
Sbjct: 415 IIAAILKHAFKDEFLAENYKKIGKSSS---QSSQRSDSQSNRKRQSFDGENIRLFVALGK 471

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             K   + L+  + + S +  + I  ++V    +FV VS++  + +  + K +K
Sbjct: 472 LDKMNPKKLVEYISKKSEVKGRDIDEVKVFEKFSFVTVSSENAETIIDSFKNEK 525


>gi|116073020|ref|ZP_01470282.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
 gi|116068325|gb|EAU74077.1| putative ATP-dependent RNA helicase [Synechococcus sp. RS9916]
          Length = 599

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/561 (26%), Positives = 267/561 (47%), Gaps = 41/561 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + L+E+GY   + +Q A     +  +D++  AQTG+GKT AF L L   L  + 
Sbjct: 50  FSEALVKTLTEKGYKEPSPIQAAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLQKDA 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P AL +APTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 110 TK------PQALVLAPTRELAMQVAESFKAYSAGHPHLNVLAIYGGSDFRSQIHALKRGV 163

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R   L+ + L+++VLDEADEML +GF DD+E+ILD  P++R++++F
Sbjct: 164 DVVVGTPGRVMDHMRQGTLDTTGLRSLVLDEADEMLRMGFIDDVEWILDQLPEERQVVLF 223

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K Y ++   + I ++ ++   I  R + +  S +  A+  +L     +
Sbjct: 224 SATMPSEIRRLSKRYLREPAEITIKTKEKEARRIRQRCITLQNSHKLEALNRVLEAVTGE 283

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A     ++ L      V  L+G++ Q +R   ++ +R G   + +ATDVAA
Sbjct: 284 GVIIFARTKAITLNVSESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAA 343

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E  +HR GRTGRAGR G ++  +    +R    L R    
Sbjct: 344 RGLDVDRIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFVTPRERRFVNNLERAVGQ 403

Query: 366 SVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDE----KKMVDVLLAKHDPEKIAA 418
            +     PS   I +    ++ Q   D    +  Q DE    ++++  +  +HD +    
Sbjct: 404 EIEPMAIPSNAEINQSRLDKLRQRLTDAATGEPNQSDEAVLLQELLQRVGQEHDLDP--- 460

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR------------------AFKVGGGSR 460
              R+  A L       P+ +       ++  R                    +    SR
Sbjct: 461 --SRLALAALTLAVGDGPLLVQGDESWIQNSGRQRFDRRDGRDGRDGRFGDRRRSERASR 518

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----D 516
                   + + VG + + +   L+  +   SG+  + IG I++    +FV++      D
Sbjct: 519 PPEDNMQRYRVEVGHRDRVKPGNLVGAIANESGLQGRMIGRIQIFESHSFVDLPKGMPQD 578

Query: 517 GVDLLRRTVKLDKGIQLKYLG 537
               L+R   +++ +Q+    
Sbjct: 579 VFSSLQRLKVMNRELQISPAS 599


>gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 559

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/549 (27%), Positives = 264/549 (48%), Gaps = 26/549 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHLIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
             V     P  +A+ +   +++           +S  GD    +   +    P  +    
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                   A     I R     P                   R  +         +G + 
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGSSDRGDRPERERRAPVPLAEGRAR 484

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
              ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  
Sbjct: 485 CRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDT 544

Query: 529 K--GIQLKY 535
           +  G QLK 
Sbjct: 545 RVAGKQLKL 553


>gi|296170155|ref|ZP_06851752.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895181|gb|EFG74896.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 566

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 263/563 (46%), Gaps = 20/563 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  A+++ GY + T +Q A +   +   DV+  AQTG+GKT AF + + 
Sbjct: 13  TTFADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPIL 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S +         + A  AL +APTRELA+QV        A    V  +   GG S   + 
Sbjct: 73  SKIDVA------SKATQALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGSSYTVQL 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VVGTPGR+ DH+    L++SH+  +VLDEADEML +GF ++++ IL  +P+
Sbjct: 127 AGLRRGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSETPE 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +++ +FSAT+ PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +
Sbjct: 187 YKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKMDALTRV 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVF  T+ +     + L    F   A++G++ Q +R   +  ++DG   + 
Sbjct: 247 LEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     
Sbjct: 307 VATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLRA 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKI 416
           + +    +++    P+VE +  +   +            G E  +K+V+    +HD    
Sbjct: 367 IEKATRQTLIEAELPTVEDVNAQRVAKFADSITAALGRPGIELFRKLVEDYEREHDVPLA 426

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                   ++     E +        R    DD R           F   + + ++VG +
Sbjct: 427 DIAAALALQSR-DGEEFLMAPEPPRERRERHDDHRERAEKPRQSRPF---TTYRIAVGKR 482

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQ 532
            K     ++  +    G++R   G I + PD + VE+ A      +  L RT      I 
Sbjct: 483 HKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLSPSTLKKLERTRISGVLIN 542

Query: 533 LKYLGGEKPDFRGYKSSGFKSKN 555
           L+         RG  S   + K+
Sbjct: 543 LQPDRSASK-PRGRDSGKPRRKH 564


>gi|78189083|ref|YP_379421.1| DEAD/DEAH box helicase-like [Chlorobium chlorochromatii CaD3]
 gi|78171282|gb|ABB28378.1| ATP-dependent RNA helicase CsdA [Chlorobium chlorochromatii CaD3]
          Length = 640

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 163/629 (25%), Positives = 270/629 (42%), Gaps = 70/629 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+++ +AL E GY + T +Q   +   L  +DVL  AQTG+GKT AF L + +++  + 
Sbjct: 17  LPELLMKALEEVGYESPTPIQAQTIPFLLAGRDVLGQAQTGTGKTAAFALPILASIDIQQ 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    +           V   GG     + R L+ G 
Sbjct: 77  AE------PQALVLAPTRELAIQVAEAFQRYAEYLKGFHVVPIYGGQDYGIQFRMLRRGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   LN++HLK +VLDEADEML +GF DD+E+IL+ +P  R++ +F
Sbjct: 131 QVVVGTPGRVMDHIRRGSLNLTHLKTLVLDEADEMLRMGFIDDVEWILEQTPAGRQVALF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y      V I ++      I  R  +V  S + + +  IL      
Sbjct: 191 SATMPPPIRRIAQKYLDQPAEVTIQTKTTTVDTIRQRYWVVGGSHKLDILTRILEVEPFD 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    +   AL+G++ Q +R   ++ +++G   + +ATDVAA
Sbjct: 251 GMIIFSRTKTMTIELAEKLQARGYAAAALNGDMPQNQRERTIEQLKNGNINIVVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++  +    +     + +    
Sbjct: 311 RGLDVERISHVVNYDIPSDTESYVHRIGRTGRAGRAGDAILFVAPREKNMLYAIEKATRS 370

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG------ 419
            +     P+ E I  +   +  Q     D+I  ++      ++ ++  E           
Sbjct: 371 RIEQMVLPTTEVINNKRIAKFNQR--ISDTIAAEDLGFFTRMIEQYCNEHNVPMLDAAAA 428

Query: 420 ----------FLRIHRAGLCAPEEITPVSLVSGR------------------DRFRDDSR 451
                      L   +       E         R                  DRF  D R
Sbjct: 429 LASLVQGETPLLLADKPERSRSSERDSYGSSRDRGFEREGRDSRSGGREGRSDRFERDGR 488

Query: 452 AFKVGGGSRDNF--------------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
           + +   G RD                +    + L VGS    +A  ++  +   +G+  +
Sbjct: 489 SGRDDRGGRDERSAPRKRGRSEVYGEEPKDRYRLEVGSTHGVKAGNILGAILNEAGLAPE 548

Query: 498 SIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGG-------EKPDFRGY 546
           S+G I +    T +E+     D     LR+     + ++L  +               G 
Sbjct: 549 SVGHISISDTYTTIELPKQMPDTMFHELRKIRVCGRQLRLSRMEEHEGGHSTHSSHGTGA 608

Query: 547 KSSGFKS--KNSQDGATKRFKRFKGASKN 573
              G K   +     A    + F G  K 
Sbjct: 609 YGGGAKKSFRKPNKSANDEGEFFAGFKKK 637


>gi|296129739|ref|YP_003636989.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296021554|gb|ADG74790.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 581

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 154/566 (27%), Positives = 261/566 (46%), Gaps = 24/566 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  A+   G+   T VQ   +   L  +DV+  AQTG+GKT AFGL L 
Sbjct: 15  TTFADLGLDPRVLSAVHGLGFTAPTPVQAQTIPALLAGRDVVGVAQTGTGKTAAFGLPLL 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
            ++  +       +A   + + PTRELA+QV   L    A    +  V   GG     ++
Sbjct: 75  QSVDPD------VAAVQVVVLTPTRELAMQVADALTSFAADMPGLQVVAVYGGSPYLPQQ 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  GA +VVGTPGR+ DHI  + L +  ++ +VLDEADEML +GF +D++ +L  +P 
Sbjct: 129 RALARGAQVVVGTPGRVIDHIDRRTLRLDDVRMLVLDEADEMLRMGFAEDVDKVLSGTPA 188

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++ +FSAT+ P I  +A  +  + V V ++ ++     +     +V    +  A+  +
Sbjct: 189 GRQVALFSATMPPQIRRVADQHLVNPVSVAVSRQSSTVESVRQTYAVVPYRHKAGALARV 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    A  AIVF  TR +      VL +       +SG+++Q +R   ++ +R G   V 
Sbjct: 249 LAVSDADAAIVFVRTREAAEEIGNVLVQRGIAAAHISGDVAQADRERIVERLRSGTLDVL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  + LV++ +L   PE  +HR GRTGRAGR G ++  +  + + R  +
Sbjct: 309 VATDVAARGLDVERIGLVVNLDLPREPEAYVHRIGRTGRAGRTGEALTFVTPSERPRLRQ 368

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAKH---DP 413
           + R     +V    P+   +    A  +L   D           +  V   LA H   DP
Sbjct: 369 IERTTRTPLVEITIPTPAQVSAHRATALLGRTDARLAAGRLDVVRTAVLEHLAAHPDVDP 428

Query: 414 EKI--AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR----AFKVGGGSRDNFKGSS 467
             +  A   L +   G  A  E    ++   R+   +++R    A            G  
Sbjct: 429 VDLLTAVAALAVGDEGPSAEVEYLDDAVRRARETRHEETRGGQVAGNRRRPGTTGPSGRP 488

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRR 523
            + ++VG +   +   L+  L    G+  + +G I +      V++ +    + VD L R
Sbjct: 489 RYRVAVGERDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFALVDIPSGLTPEVVDRLGR 548

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSS 549
           T    + ++++   G +      +  
Sbjct: 549 TRVAGRPLRIRLDTGPQSSRGPSRGE 574


>gi|296139030|ref|YP_003646273.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296027164|gb|ADG77934.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 602

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 156/576 (27%), Positives = 273/576 (47%), Gaps = 33/576 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL+E GY N + +Q A + P L   DV+  AQTG+GKT AF + + S +  E 
Sbjct: 35  IDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLSKIDGE- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                +  P AL +APTRELA+QV             +  +   GG S   +   L+ GA
Sbjct: 94  -----SRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGA 148

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L++S+L+ +VLDEADEML +GF++D+E IL  +P+ +++ +F
Sbjct: 149 QIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALF 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +AK Y  D V +++ ++    S+I  R + VA   + +A+  +L      
Sbjct: 209 SATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFD 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+++     + L        A++G++ Q +R   +  ++DG+  + +ATDVAA
Sbjct: 269 GMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +     + +    
Sbjct: 329 RGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKATRQ 388

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----DPEKIAAGFL 421
            +     PSVE +     ++  +     +++  D  +M   L+  +    D   +     
Sbjct: 389 PLTEIGLPSVEDVNAHRVEKFGES--ITENLSNDHLQMFRRLIEDYVGANDVPLVDLAAA 446

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----------------SRDNFKG 465
              ++   +   + P      R+      R F                      R   + 
Sbjct: 447 LALQSRDGSSFLLQPDPPERERNSRDRKDRDFGDRDDRGRGRRDRDRDREPSVHRKTGRP 506

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLL 521
            + + ++VG +Q A    ++  +    G+ R   G I ++PD + VE+  D      D L
Sbjct: 507 MAPYRIAVGKRQHATPSAIVGAIANEGGLRRSDFGHISIRPDHSIVELPDDLPREVFDAL 566

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ 557
            RT    + I L+   G            F++   +
Sbjct: 567 ERTRISGQLINLEVDPGAPTGRPSGGKQRFRAGRKR 602


>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932415|ref|YP_001385046.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936759|ref|YP_001388516.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
           [Clostridium botulinum A str. ATCC 3502]
 gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 524

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 144/527 (27%), Positives = 257/527 (48%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDKEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  AI  I
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERIIKSKITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                           +   +      LSVG
Sbjct: 418 QVSAALMEMLFSKEMSFDYTN-----------------------DKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +   + +    IG I +    TF++VS+   + +
Sbjct: 455 RKDSINVKSLLTFIQDEASVKNHEIGDIDILDKFTFMDVSSSTAEKI 501


>gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
          Length = 557

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/547 (28%), Positives = 272/547 (49%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L +   +   
Sbjct: 12  ELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILHRIDPS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     ++ +  +VLDEADEML LGF DD+E I  + P+ R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPESRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++           +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKMTNSLSPLVADAESTHGDLLDRLTADIG-CSPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E   P+   +     R         R  +         +G +   
Sbjct: 425 LRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPVPLAEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|269962576|ref|ZP_06176923.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
 gi|269832689|gb|EEZ86801.1| ATP-dependent RNA helicase DeaD [Vibrio harveyi 1DA3]
          Length = 644

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 158/560 (28%), Positives = 273/560 (48%), Gaps = 26/560 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + 
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L  +  +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R 
Sbjct: 68  LDLDQRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAH+VVGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  
Sbjct: 122 LKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P +  + + + ++ V V++A +N     +  +  +V   ++D A+  +L 
Sbjct: 182 QRVLFSATMPPMLKNIVERFLREPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +A
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + 
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEK 415
           R    S+     P  + + E    ++  + L  +       K  +++       + DP  
Sbjct: 362 RVTKSSMEEIQLPLRDQVAEARLSKLAAE-LEAEKEHKSLDKFAELVEKLQTSLEIDPAM 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
           +AA  L+  +             + +     +      + G     +F    W  + L V
Sbjct: 421 LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNTQDWDTYQLQV 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529
           G +Q  + + ++  L    G+ + SIGAI++    TFV++      D  + L +      
Sbjct: 481 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLR---- 536

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ + +G    DF  ++ S
Sbjct: 537 -IRQQDVGAVVCDFDDFRES 555


>gi|288800406|ref|ZP_06405864.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332619|gb|EFC71099.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 641

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 162/594 (27%), Positives = 272/594 (45%), Gaps = 29/594 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE   I + I +A+ E G+ + T VQE ++   L    DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEMLGISEEIRQAIEELGFEHPTPVQEEVIPYLLGEGNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  +           AL ++PTREL +Q+   L         +  V   GG S+  
Sbjct: 61  LIQKVNPQQ------KHTQALILSPTRELCLQISDSLSDFSKYIKGLTVVPVYGGTSIET 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G  I+V TPGRL D I      + ++  VVLDEADEML++GF + I  IL+  
Sbjct: 115 QIKALKKGTQIIVATPGRLIDLIHRGVAKLENVTNVVLDEADEMLNMGFSESINEILECV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R  L+FSAT+S  I  +A+NY  +   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PKDRNTLLFSATMSKEIERIARNYLTNHKEIVVGSRNEGAESVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+ +  AI+FC T+         L    +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDYYPSIFAIIFCRTKRETQEIADKLIHDGYNAEALHGDLSQQQRDLTMQKFRKHTTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ ++    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIMHTRERSKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + +  + + V    P  +AI  +   +++   L  D  + +       ++      D 
Sbjct: 355 HAIEKVISKAFVEGEIPDAKAICSKQLYKVMDQILKADVNEEEIAPFLSEINRHFEYVDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS-----------RAFKVGGGSRDN 462
           E I    + +            P+     R R  D             R        R  
Sbjct: 415 EDIIKKIVSMEFGKFLEYYANAPIIEKPSRGRGEDRGSKGNRRDGSGQRRSGERRAPRAV 474

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
             G     +++G         +M  + ++    RQ +G I +   ++++EV     + + 
Sbjct: 475 ESGFKRLFINLGKADGFYPGEIMQFINKNVK-GRQQVGHIDLLDKISYIEVPERDANKVM 533

Query: 523 RTVKLD--KGIQLKYLGGEK-PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           + +     K  +++    E+  + +  +S+G ++    D   +  KR +  + N
Sbjct: 534 KALSGSIYKNREVRCNDAEEGSNGKKGRSTGGRNAGG-DSDNRYEKRSRQRNSN 586


>gi|307252129|ref|ZP_07534028.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860429|gb|EFM92443.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 596

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 152/602 (25%), Positives = 263/602 (43%), Gaps = 52/602 (8%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+V  + +Q+  +   L  +DVL  AQTGSGKT AF L L + +            P  
Sbjct: 1   MGFVTPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK------RHPQM 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L +APTRELA+QV    E        V  V   GG     + R L+ G+ +VVGTPGR+ 
Sbjct: 55  LVMAPTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHIR   L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  +
Sbjct: 115 DHIRRGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + + +D   V I +  R   DI     LV    +++A++  L       AI+F  T+  
Sbjct: 175 TRRFMQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTG 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
               T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV
Sbjct: 235 TIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ ++  + E+ +HR GRTGRAGR G ++  +    +R    +       +     P+ E
Sbjct: 295 VNFDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHE 354

Query: 377 AIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
            +  +  ++    +   L    ++   + + D+  A  D E++AA  + + +        
Sbjct: 355 ILMAKRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMMLQEKQKLILP 414

Query: 434 ITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
             P               DR               +N      + + +G +   E R ++
Sbjct: 415 PDPEIRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDLYRIELGREDGVEVRHIV 474

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLDKGIQLKYLG--- 537
             +     I+ + IG I++    + +E+     + +     ++   L+K +Q+  L    
Sbjct: 475 GAIANEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQKARVLNKQMQMSLLSPAG 534

Query: 538 --GEKP------------------------DFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
               +P                             +  GF  +       KRF       
Sbjct: 535 GVNSQPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDRKKGGFKEKRFNDKGRGR 594

Query: 572 KN 573
           ++
Sbjct: 595 RD 596


>gi|84490017|ref|YP_448249.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84373336|gb|ABC57606.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 583

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 157/576 (27%), Positives = 270/576 (46%), Gaps = 38/576 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+++ G+   + +Q   +   L  KDV   AQTG+GKT AFG+ L   + +E
Sbjct: 10  NISPEIQKAVADMGFEEASPIQSLAIPQILAHKDVTGQAQTGTGKTAAFGIPLLENIDSE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           ++         A+ + PTRELA+QV  EL  L      +  +   GG  + R+ + LQ G
Sbjct: 70  DNN------LQAIILCPTRELAIQVAEELRKLSVYLPKIDVLPVYGGQPIDRQIKALQKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DHI    L+++++K V+LDEADEMLD+GFR+DIE+IL+  P +R+ L+
Sbjct: 124 VQIIIGTPGRVMDHIDRGTLSLNNIKTVILDEADEMLDMGFREDIEYILEDIPYERQFLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA+ YQ +   V +        D++ +   V    +   +  +L  H  
Sbjct: 184 FSATLPQEILQLAQRYQTNPEIVKVTKHELTTPDVEQKYFEVKEDMKLELLSRLLDLHDF 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++VFC+T+  V +    L    +    L G+L+Q +R   +   + G   + +ATDVA
Sbjct: 244 DLSLVFCNTKRKVDKLVSHLQIRGYLADGLHGDLTQNQRDRVMSKFKKGNIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +E V + ++ ++ E  +HR GRTGRAG+ G +   +      +   + R A 
Sbjct: 304 ARGIDVGGVEAVFNFDIPNDNEYYVHRIGRTGRAGKTGKAYSFVSGREIYQLRDIQRYAK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +   P P++  + E         L++ +  + I  +   +  ++   ++   IAA  L
Sbjct: 364 TKIEQAPIPALSDVEEVKKDNFIEELKEKINTEDISKETYIIEKLVEEDYNSIDIAATLL 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +                         DD R  +   G  +  +G   F +SVG KQ    
Sbjct: 424 K----------------------GVIDDKRYKEEEFGDTEAHEGFVRFFMSVGRKQNITI 461

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKYLG 537
             ++  +   +G+    IG I +  + +FVE+         R    T   +K   ++   
Sbjct: 462 SVILNSIYEKTGLTGHQIGNIDIFDNFSFVEIPKANASDFYRFMGDTYIENKRAHIEP-- 519

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               D     ++   ++N      ++ K+F     +
Sbjct: 520 ARPRDKSKKNNTRNNNRNFNKKRGRKSKKFNPHRND 555


>gi|327481186|gb|AEA84496.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 556

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 161/556 (28%), Positives = 280/556 (50%), Gaps = 27/556 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A+S  GY   + +Q   +   L   D++  AQTG+GKT AF L + S +    
Sbjct: 13  IHSAVLAAISAVGYEEPSPIQAQAIPVILGGHDMIGQAQTGTGKTAAFALPILSKIDPAK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++ GA
Sbjct: 73  ------REPQALILAPTRELALQVATAFETYSKQMPDVSVVAIYGGAPMGPQLKAIRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+      +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QVIVATPGRLVDHLSRNSELLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQSVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + ++   + IA++ +  + I+   ++V    +  A++ +L      
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R  N 
Sbjct: 307 RGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFL 421
            V     P+ + + +   +++     PL  D+ +    +++D L+A     P  +AA  L
Sbjct: 367 KVAEARLPNAQQVLDARIKKLTNSLAPLVADA-EATHGELLDKLVADIGCSPRALAAALL 425

Query: 422 RIHRAG----LCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNF----KGSSWFSLS 472
           R    G    L   E   P V   S R+R     R  + G   R       +G +     
Sbjct: 426 RKATNGQALTLAEVEREQPLVPTSSPRERTERSDRPERSGDRERRAPVPLAEGRARCRTP 485

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           +G++    AR L+  +    G+ R++IG I+V+   + VE+  DG+D L   +K      
Sbjct: 486 LGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDRLLGKLKD----- 540

Query: 533 LKYLGGEKPDFRGYKS 548
              +GG++   R Y+ 
Sbjct: 541 -TRVGGKQLKLRRYRE 555


>gi|303238769|ref|ZP_07325301.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593648|gb|EFL63364.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 544

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 149/552 (26%), Positives = 265/552 (48%), Gaps = 40/552 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+++ G+   T +Q   +   L+  D++  AQTG+GKT AFG+     L  +
Sbjct: 10  NLSDEIQKAIADMGFEEATPIQSQTIPQILKGIDLIGQAQTGTGKTCAFGIPAIEMLDPQ 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N+          L ++PTRELA+Q+  EL  +     G+ +    GG  + R+   L+  
Sbjct: 70  NE------GIQVLILSPTRELAIQISEELRDVSKYKEGIKILPVYGGQPIDRQIAALKKR 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++GTPGR+ DH+R + L ++ LK ++LDEADEML++GFR+DI+ IL+  P++++ ++
Sbjct: 124 PQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEMLNMGFREDIDTILEKVPEEKQTIL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L   Y K+ + +  A +      I+   + V+ S +   +  ++  +  
Sbjct: 184 FSATMPKEILDLTSKYLKNPLHIKAAHKQMTVPSIEQFYLEVSQSSKLEILSRLIDANNI 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++VFC+T+  V   T  L    +   AL G++ Q +R+  +   R G+  + IATDVA
Sbjct: 244 GLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDMKQDQRNRVMTKFRKGQIDILIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++E V + +L S+ E  +HR GRTGRAG+ G S   +      + + + R   
Sbjct: 304 ARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGREIHKLKDIQRYTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQG---------DEKKMVDVLLAKHD 412
            ++     P+   + ER    IL   +D L   +            DE    D+      
Sbjct: 364 STIHLIKPPTAMDVEERKIGLILNKVKDTLAEGNFSKYVSYVEKVLDEANSKDLDTNYVT 423

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             +IAA  L+          +       + +D   +D+           + +G     ++
Sbjct: 424 NLEIAAALLKTIF-------DQNNDQTSNAQDIIEEDT----------GSKEGMVRLFIN 466

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LD 528
           VG   K + + ++  +   + +  + IGAI +    TFVEV  +    +   +K      
Sbjct: 467 VGRDSKIQPKHIVESIASCTSLPGKLIGAIDIFDRFTFVEVPKEYSSEVMEAMKNYTLKG 526

Query: 529 KGIQLKYLGGEK 540
           K I ++    ++
Sbjct: 527 KKIVIQRSNKKR 538


>gi|90416373|ref|ZP_01224305.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
 gi|90332098|gb|EAS47312.1| ATP-dependent RNA helicase DeaD [marine gamma proteobacterium
           HTCC2207]
          Length = 619

 Score =  286 bits (732), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 159/615 (25%), Positives = 270/615 (43%), Gaps = 55/615 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +A+ + GY   + VQEA +   L  K++L +AQTG+GKT AF L   S L  + 
Sbjct: 11  ISAPVLKAVQQLGYEQPSPVQEASIPILLEGKNLLGTAQTGTGKTAAFALPFLSKLDEKQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV    +           +   GG  +  + R L+ GA
Sbjct: 71  ------KTPQVLVLTPTRELAIQVAEAFQSYAKHIKGFHVLPIYGGADIGGQLRGLKRGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+R + L++S +K ++LDEADEML +GF DD+E IL  +P + +  +F
Sbjct: 125 QVVVGTPGRMLDHLRRRSLDLSQIKGLILDEADEMLRMGFIDDVETILAKTPPECQRTLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A  Y  DA  V+I ++ +    I    ++V    + +A+  IL      
Sbjct: 185 SATMPPAIKRVADKYLGDAEVVSIENKTKTVERIAQSHLMVKGHQKMDALTRILDVEQFD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T++S     + L    F   AL+G+L+Q  R   +  ++ G+  + +ATDVAA
Sbjct: 245 GMIIFVRTKSSTLEIAEKLEARGFSSAALNGDLTQTVRERTINRLKKGQLDIVVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRAGR+G ++  + Q   R    + +    
Sbjct: 305 RGLDVERISHVINYDVPYDNESYVHRIGRTGRAGREGKAIMFVTQKETRMLRSIEKSTRQ 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     PS E +  +  ++  +          LD      K++             A  
Sbjct: 365 PISSFNLPSNEEVSGQRVEQFKEQLVGMCKSTKLDKFHSLVKEVAAEHDIDMTLLAAALA 424

Query: 420 FLRIH--------------------RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-- 457
           F                        R+    P E    +  S R   +   RA K     
Sbjct: 425 FEAQKERPLFPKMVAIDTPRASNKDRSNDRKPRERNERNDRSDRSERQRPDRAPKAARDK 484

Query: 458 ----GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                +  N      + + VG       + ++  +   + I+ Q IG I++  + + V++
Sbjct: 485 APMTDNEGNDVAMITYRIEVGRNDDVSPKNIVGAIANEAQIDAQFIGHIKLHDNHSTVDL 544

Query: 514 SA----DGVDLLRRTVKLDKGIQLKYLGG-------EKPDFRGYKSSG-----FKSKNSQ 557
                 +  D L +     K +++    G        KP F+G +         K+    
Sbjct: 545 PEGMPKELFDHLYKVRVCQKPLKISVDNGTAGEQRDAKPAFKGKRDKPAFKGKPKAHRGS 604

Query: 558 DGATKRFKRFKGASK 572
           D   ++ ++     +
Sbjct: 605 DSEPRKPRKRPATDR 619


>gi|332670437|ref|YP_004453445.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332339475|gb|AEE46058.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 596

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 149/570 (26%), Positives = 264/570 (46%), Gaps = 26/570 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+++ G+V  +++Q   +   L  +D++  AQTG+GKT AFGL L + +    
Sbjct: 32  LPAPLERAVADLGFVTPSAIQSQAVPALLAGRDIVGVAQTGTGKTAAFGLPLLAAVD--- 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +  +   A+ + PTRELA+QV   +         +  V   GG     ++R +  GA
Sbjct: 89  ---AGTAGVQAIVLTPTRELAMQVADAITSFATHLPGLAVVAVYGGSPFLPQQRAIARGA 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L +  ++ +VLDEADEML +GF +D++ +L S+P +R++ +F
Sbjct: 146 QVVVGTPGRVLDHLDRGTLVLDQVRYLVLDEADEMLRMGFAEDVDRVLASTPDRRQVALF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +    V + +A ++   + +     +V    +  A+  +L    A 
Sbjct: 206 SATMPAPIRRVAEQHLHQPVEITVARQSSTVTTVRQTYAVVPYRHKIGALGRVLAVTDAD 265

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR +       L E       +SG+++Q +R   +  +R G   V +ATDVAA
Sbjct: 266 ATIVFVRTRGAAEEVGSALVERGISAAHISGDVAQSDREKIVDRLRSGALDVLVATDVAA 325

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++    E  +HR GRTGRAGR+G+++  +    Q R   + R   V
Sbjct: 326 RGLDVERIGLVVNFDVPREAETYVHRIGRTGRAGREGVALSFVTPAEQSRLRTIERTTRV 385

Query: 366 SVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGD-EKKMVDVLLAKH---DPEKIAAGF 420
           ++   P P+   +       +L + P   +  + D  ++ V   LA H   DP ++ A  
Sbjct: 386 TLEQVPIPTPAEVSAHRVALLLGRTPARAELGRLDVYREAVAAHLAAHPGTDPIELLAAV 445

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF----------KGSSWFS 470
             +                 +         R  +VGG  R              G   + 
Sbjct: 446 TALAVGDEGPTPRDGDDLDDALERARLTPGRHERVGGDDRPPRERRRAETHIAGGPPRWR 505

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVK 526
           ++VG +   +   L+  L    G+  + +G I +      V++     AD VD L RT  
Sbjct: 506 VAVGHRDGLQPGALVGALTGEGGLTGKDVGKIDIFGSFALVDIPGGLSADVVDRLSRTRV 565

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
             + ++++   G +P     + S    +  
Sbjct: 566 AGRPLRIRVDTGPRPGHGASRPSHGPQRGR 595


>gi|104780746|ref|YP_607244.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95109733|emb|CAK14434.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 562

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 160/553 (28%), Positives = 273/553 (49%), Gaps = 31/553 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  A+   GY   +++Q+  +   L   D++  AQTG+GKT AF L + + +   
Sbjct: 12  ELNPNIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNKIDVS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + R ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD+E I D+ P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPASRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I ++A+ + ++   V I S+ +  + ID   ++V    +  A++ +L     
Sbjct: 186 FSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLLEVEEF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGF 420
             V     P+ +A+ +   +++     PL  ++ +    ++ D L A     P  ++A  
Sbjct: 366 QKVAEARLPNAQAVLDARIKKLTNSLAPLVAEA-EATHGELFDRLTAALGCSPRALSAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFRDDSRAFKVGG------------GSRDNFK 464
           LR    G    L   E   P+       R R   R  +                     +
Sbjct: 425 LRKATNGQALDLATVEREQPLVPTYT-PRERSGERTERGERSDRGDRGDRERRAPMPLAE 483

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G      ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++ L   
Sbjct: 484 GRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLTK 543

Query: 525 VKLDK--GIQLKY 535
           +K  +  G QLK 
Sbjct: 544 LKDTRVAGKQLKL 556


>gi|15896262|ref|NP_349611.1| ATP-dependent RNA [Clostridium acetobutylicum ATCC 824]
 gi|15026068|gb|AAK80951.1|AE007798_3 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis
           ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325510417|gb|ADZ22053.1| ATP-dependent RNA helicase (superfamily II) [Clostridium
           acetobutylicum EA 2018]
          Length = 528

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 147/535 (27%), Positives = 251/535 (46%), Gaps = 35/535 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + +A+ + G+   + +Q   +   +   D++  AQTG+GKTVAFG  + 
Sbjct: 4   KKFSDLKLNSSVLKAIDDMGFEEPSKIQAEAIPVVIDGYDMIGQAQTGTGKTVAFGAPII 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S +   +++        A+ + PTRELA+Q+  EL  L     V V    GG S+ R+ R
Sbjct: 64  SKIKDIDEK----EGVQAIILTPTRELAIQITDELTRLSKYARVRVLPIYGGQSIERQMR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  ++V TPGR+ DHI+ K + +  +K +VLDEADEMLD+GF DDIE I+ +    
Sbjct: 120 AIKRGVDVIVATPGRIMDHIKRKTVKLDKVKFLVLDEADEMLDMGFIDDIEGIIKNISGD 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ ++FSAT+   I  LA NY K  V+   I   +     I      V   D+  A+  I
Sbjct: 180 RQTMLFSATMPAPIKKLASNYMKKEVKHIAIIKNSLTVERIQQFYFEVKNKDKFEALCRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  I+FC T+  V    + +    + V  + G++SQ +R N L+  ++      
Sbjct: 240 IDVEEPETTIIFCRTKRGVDELVESMQFRGYNVEGMHGDMSQNQRINTLKKFKENNIDFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA  +G++  ++        ++
Sbjct: 300 VATDVAARGIDVHNVSHVINYDIPQDMESYVHRIGRTGRANAEGIAYSLVTPREYVMIKQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE---- 414
           + +     +  +  P+++ I E     +        +I+ D+ K     + K D E    
Sbjct: 360 IEKFTKSKIRRKEIPTIDDIFETKYNTLTDK--ITKNIEKDDFKKYIPFVQKLDDEFNLV 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            ++A  +++                        D    F      +     S     S G
Sbjct: 418 DVSAALVKMIF----------------------DKEMGFDYSDDDKLKSDESVRLFFSAG 455

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            K K   + L+  +  +SG+    IG I +    TFV+V     D++ RT    K
Sbjct: 456 RKDKLTVKKLLEFIDNASGVEGNEIGDIDILDKFTFVDVPERLRDVIIRTCDGKK 510


>gi|310822103|ref|YP_003954461.1| RNA helicase dead [Stigmatella aurantiaca DW4/3-1]
 gi|309395175|gb|ADO72634.1| RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
          Length = 621

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 169/578 (29%), Positives = 275/578 (47%), Gaps = 46/578 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE++     + EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L 
Sbjct: 49  NTFESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         AS   AL + PTRELA+QV   +     K G+ V    GG  + ++ R
Sbjct: 109 QRITPGAHAPFTAS---ALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLR 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VV TPGR  DH++ K L +  ++ VVLDEADEMLD+GF +D+E IL S+P+K
Sbjct: 166 VLKRGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEK 225

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIV 236
           R+  +FSAT+ P I ++A+ + ++ VRV IA E  +      +   A +V  + +   + 
Sbjct: 226 RQTALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLS 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       AIVFC TR  V   T  L  H ++  AL G +SQ++R   ++ ++   A 
Sbjct: 286 RVLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRAHALHGGMSQEQRDRVIKQLKSHSAD 345

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++     R  
Sbjct: 346 LLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLL 405

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + +     +     P+V  +R +  +     L++ L    +    + +V+ L A+ D 
Sbjct: 406 RNIEKLTGQRIEVATVPTVADLRAKRLEVTRASLREALVAGGLDS-YRGLVEGLAAEFDV 464

Query: 414 EKIAAGFLRIHR----AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----- 464
            ++AA  +++ +     G    EE  PV       R R + R  +         K     
Sbjct: 465 MEVAAAAVKLLQEARDEGHAQNEEEIPVVPPPSEKRGRTE-RPSRGAPPPERRGKAEAPP 523

Query: 465 --------------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                                 +   +  G +       L+  +   +G+    +GAI++
Sbjct: 524 SERPRPPEKGAPRRGTSPDWDITRLYIGAGRRVGIRPADLVGAITGEAGLESSQVGAIQI 583

Query: 505 QPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGG 538
               + VEV     +     LR+     + + ++   G
Sbjct: 584 ADTFSLVEVPEAYANQIVTALRQATLRGRKVTVRRDRG 621


>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
 gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
          Length = 557

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 159/547 (29%), Positives = 274/547 (50%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+   GY   +++Q+  +   +  +D++  AQTG+GKT AF L +   +   
Sbjct: 12  NLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCIDPA 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S +  +VLDEADEML LGF DD+E I  + P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++      L    +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG-CTPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E+  P+   +     R         R  +         +G +   
Sbjct: 425 LRKATNGQALTLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPVPLAEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
 gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
          Length = 557

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 159/547 (29%), Positives = 274/547 (50%), Gaps = 24/547 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+   GY   +++Q+  +   +  +D++  AQTG+GKT AF L +   +   
Sbjct: 12  NLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAFALPILHCIDPA 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                    P AL +APTRELA+QV    E    +   V  V   GG  +  + + ++NG
Sbjct: 72  K------REPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRLCDH+R     +S +  +VLDEADEML LGF DD+E I  + P  R+ ++
Sbjct: 126 AQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPTRQTVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + +D   V I ++ +  + I+   +LV    + +A++++L     
Sbjct: 186 FSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ +       L    ++  AL+G+++Q +R   +  ++DGR  + +ATDVA
Sbjct: 246 DALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R   
Sbjct: 306 ARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             V     P  +A+ +   +++      L    +S  GD    +   +    P  +AA  
Sbjct: 366 QKVAEVRLPDAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIG-CTPRALAAAL 424

Query: 421 LRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDNFKGSSWFS 470
           LR    G    L A E+  P+   +     R         R  +         +G +   
Sbjct: 425 LRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGRARCR 484

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK- 529
            ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ L   +K  + 
Sbjct: 485 TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLKDTRV 544

Query: 530 -GIQLKY 535
            G QLK 
Sbjct: 545 AGKQLKL 551


>gi|300781459|ref|ZP_07091313.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533166|gb|EFK54227.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 675

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 149/562 (26%), Positives = 267/562 (47%), Gaps = 35/562 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+   G+ + + +Q   +   +  +DV+  AQTG+GKT AF L + + +    
Sbjct: 77  LPAPVLDAIKRVGFESPSQIQAETIPLLMEGRDVVGLAQTGTGKTAAFALPILARID--- 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              + A  P AL +APTRELA+QV    +      G +  +   GG +   +   L+ GA
Sbjct: 134 ---TSARYPQALILAPTRELALQVSDSFQSFADHLGGISVLPIYGGQAYGIQLSGLRRGA 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DH+    L+IS+L+ +VLDEADEML++GF++D+E IL+ +P+ +++ +F
Sbjct: 191 QIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPEDKQVALF 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  ++ +Y  D   V + ++ R +++I  R +  A  ++ +AI  +L      
Sbjct: 251 SATMPNAIRRISHDYLNDPEEVTVKAKTRTNTNITQRYLFTAHRNKLDAITRVLEVTEFD 310

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+       + L    F   A++G+++QQ+R   + M+RDGR  + +ATDVAA
Sbjct: 311 AMIVFVRTKQETEEIAEKLRARGFSAAAINGDIAQQQRERTVDMLRDGRLDILVATDVAA 370

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +R    + +    
Sbjct: 371 RGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEALLFVTPRERRMLRSIEKVTGA 430

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD------PEKIAAG 419
            +     P+V+ +      +        +S++ D+ ++   L+  +        E IAA 
Sbjct: 431 KIEEMDLPTVDEVNVSRMNKFADS--ITESLENDQMELFRGLVRSYSVDHDVPMEDIAAA 488

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS----------------RDNF 463
                +      +E              D         G                  ++ 
Sbjct: 489 LAAQQQGDEFLMKEPPKDKRDRRERERFDREDRRDRDRGDRGRGRDRGNRGGKGRFHNDD 548

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG----VD 519
                + L VG +Q      ++  L    G+  +  G I +  D T VE+  +     +D
Sbjct: 549 VNFDTYRLDVGKRQNVRPGAIVGALANEGGLTNRDFGRITIGGDFTLVELPKNMDKSVLD 608

Query: 520 LLRRTVKLDKGIQLKYLGGEKP 541
            L  T    + I ++   G  P
Sbjct: 609 RLSDTRISGQLINIQRDTGAPP 630


>gi|153938870|ref|YP_001392080.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934766|gb|ABS40264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295320089|gb|ADG00467.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 524

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 147/527 (27%), Positives = 260/527 (49%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDKEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V    I  ++     I      V   D+  AI  I
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAIVKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERITKSKITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                          ++   +      LSVG
Sbjct: 418 EVSAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +  SS +    IG I +    TF++VS+   + +
Sbjct: 455 RKDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|167969576|ref|ZP_02551853.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis H37Ra]
          Length = 563

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 268/570 (47%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +         +  G E  +++V+    +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVPKFADSITNALAGPGIELFRRLVEEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|91225696|ref|ZP_01260725.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269966740|ref|ZP_06180817.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
 gi|91189585|gb|EAS75860.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 12G01]
 gi|269828663|gb|EEZ82920.1| ATP-dependent RNA helicase DeaD [Vibrio alginolyticus 40B]
          Length = 643

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 159/560 (28%), Positives = 271/560 (48%), Gaps = 26/560 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + 
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L     +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R 
Sbjct: 68  LDLNQRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH+VVGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  
Sbjct: 122 LKSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P +  + + + +D V V++A +N     +  +  +V   ++D A+  +L 
Sbjct: 182 QRVLFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +A
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + 
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEK 415
           R    S+     P  + + E    ++  + L  +       K  +++         DP  
Sbjct: 362 RVTKSSMEEIQLPLRDQVAEARLAKLGAE-LEAEKEHKALDKFAELVEKLQTSLDIDPAT 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
           +AA  L+  +             + +     +      + G     NF    W  + L V
Sbjct: 421 LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529
           G +Q  + + ++  L    G+ + SIGAI++    TFV++      D  + L +      
Sbjct: 481 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLR---- 536

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ + +G    DF  ++ S
Sbjct: 537 -IRQQDVGAVVCDFDDFRES 555


>gi|170754257|ref|YP_001782408.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 524

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 146/527 (27%), Positives = 258/527 (48%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L     +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDNEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRILDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  AI  I
Sbjct: 180 KQTMLFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVDKIAQHYFAVKNKDKLEAICRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERIIKSKITKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                          ++   +      LSVG
Sbjct: 418 EVSAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +  SS +    IG I +    TF++VS+   + +
Sbjct: 455 RKDSINVKSLLTFIQDSSSVKNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 623

 Score =  286 bits (730), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 171/620 (27%), Positives = 280/620 (45%), Gaps = 59/620 (9%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +  AL + GY   T +Q A + P +  KD+L  AQTG+GKT AF L L 
Sbjct: 6   KTFRELGLTESLVRALDDLGYEKPTPIQAASIEPLMANKDILGQAQTGTGKTGAFALPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           +++          +AP  L +APTRELAVQV             +  +   GG S+ ++ 
Sbjct: 66  NSIDPNT------NAPQILVLAPTRELAVQVAEAFASYAKYMKGLHVLPIYGGQSMQQQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DDIE+IL+ +PK
Sbjct: 120 NALRRGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEMLKMGFIDDIEWILEHTPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++ +FSAT+   I  +A  Y  + V V IA+       I+ R V V+  ++  A+V +
Sbjct: 180 TRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTSTVETIEQRFVQVSQHNKLEALVRV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  I+F  TR S     + L    +    L G+++QQ R  A++ ++ G+  + 
Sbjct: 240 LEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAIEQLKRGQLDII 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V++ ++  + E  +HR GRTGRAGR GM++  +     R    
Sbjct: 300 IATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRT 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDPEK 415
           + R  N  +     PS E + ER   R+ +    + S   +  K     L    + D + 
Sbjct: 360 IERATNSRIAPMDVPSPETVTERRLSRLGEQVAEIISQDLEFMKGAVATLCQQLEVDTDI 419

Query: 416 IAAGFLRIHRAGLC-------------------------APEEITPVSLVSGRDRFRDDS 450
           +AA  L+  +                                +          DR R +S
Sbjct: 420 LAAALLKQVQKDRPLQLHTMNERQRDSRDDRNSRDRDDRGSRDRNDRGPRDRSDRPRRES 479

Query: 451 RAFKVGGGSRDNFKG-----SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
           R      G+ D+ K         + + VG         ++  +   + I+ + IG I++ 
Sbjct: 480 RPTPSNLGAADSLKDNPDVKMCRYIIDVGRDNGVGVGNIVGAVANEANIDSRYIGQIQLF 539

Query: 506 PDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEK-PDFRGYKS------------ 548
             +T +++      + +  L++     + + ++   GE   +  G  S            
Sbjct: 540 DQVTAIDLPDGMPKEVLQHLKKVRVCGRPLNIREAAGETFANTSGGDSRPPRRPRKPAGE 599

Query: 549 SGFKSKNSQDGATKRFKRFK 568
            G +S     G  K  ++  
Sbjct: 600 RGERSDRRPSGDRKPHRKGP 619


>gi|306783973|ref|ZP_07422295.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
 gi|308331209|gb|EFP20060.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu003]
          Length = 563

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 267/570 (46%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVDENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +            G E  +++V+    +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|67527053|gb|AAY68322.1| putative cold-shock dead-box protein A [uncultured marine bacterium
           66A03]
          Length = 659

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 267/543 (49%), Positives = 352/543 (64%), Gaps = 22/543 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M     I   + EA+S R Y+ LT VQEA+L  +    D+LVSAQTGSGKT+AFG+++A+
Sbjct: 1   MSNQTKIHSALAEAMSARSYITLTPVQEAVLKIEDSNSDLLVSAQTGSGKTLAFGISIAT 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLLAE   F     PLA+ IAPTRELA+QV +ELEWLY +T    A C+GG+    ERR 
Sbjct: 61  TLLAEKMEFDRPKIPLAIIIAPTRELALQVRKELEWLYVRTKAQFASCVGGMDPRAERRT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGRL DHI    L +S +KAVVLDEADEMLD+GFR+D+ FIL  +P +R
Sbjct: 121 LESGAHIVVGTPGRLRDHIERGVLRLSDIKAVVLDEADEMLDMGFREDLTFILGKAPVER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSAT+   I  LAK YQKD+VR++++S+  QH DI Y A+ +  SDRD A++N+LR
Sbjct: 181 RTLLFSATVPTQIVKLAKTYQKDSVRISVSSKKSQHLDISYHAIKIQPSDRDKAVINLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           YH    AIVFC+TRA+V+     L    F VVALSGELSQ+ER+ ALQ MR G+A VC+A
Sbjct: 241 YHDVSGAIVFCNTRAAVTHLASRLTNRGFSVVALSGELSQKERNFALQSMRAGKANVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+LELVIHA+L  + E +LHRSGRTGRAGRKG+SV +IP    ++ ER+F
Sbjct: 301 TDVAARGIDLPNLELVIHADLPQSNEAMLHRSGRTGRAGRKGVSVVLIPYRNFKKVERMF 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               +  +W   PS + I E+D   +L+  L        E ++   +L K   E IA+ F
Sbjct: 361 DSNGIEPIWVNPPSADQIIEKDRISLLKSELLTSPADASEVEIAQKILQKFPIEAIASAF 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +R   AG  APEE+T  + +   D                  F  SSWF LSVG +  AE
Sbjct: 421 VRSQMAGKSAPEELTVSNAIGPAD------------------FSNSSWFELSVGYRDNAE 462

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLKYL 536
            RWL+ MLCR   +++  IG I++   LTFVE++++GV  L   +     L++ IQ+K +
Sbjct: 463 PRWLVAMLCRVGNMDKSLIGDIQIHNSLTFVEIASNGVQQLLAEIGPDFMLEEKIQIKQM 522

Query: 537 GGE 539
              
Sbjct: 523 QAA 525


>gi|28900463|ref|NP_800118.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365616|ref|ZP_05778137.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
 gi|260877415|ref|ZP_05889770.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|260898897|ref|ZP_05907338.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|260901269|ref|ZP_05909664.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|28808843|dbj|BAC61951.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089202|gb|EFO38897.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus Peru-466]
 gi|308090808|gb|EFO40503.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AN-5034]
 gi|308106808|gb|EFO44348.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus AQ4037]
 gi|308111459|gb|EFO48999.1| cold-shock DEAD box protein A [Vibrio parahaemolyticus K5030]
          Length = 643

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 159/554 (28%), Positives = 270/554 (48%), Gaps = 20/554 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + 
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L  +  +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R 
Sbjct: 68  LDLDQRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAH+VVGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  
Sbjct: 122 LKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P +  + + + +D V V++A +N     +  +  +V   ++D A+  +L 
Sbjct: 182 QRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +A
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + 
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEK 415
           R    S+     P  + + E    ++  + L  +       K  +++       + DP  
Sbjct: 362 RVTKSSMEEIQLPLRDQVAEARLNKLAAE-LEAEKEHKALDKFAELVEKLQTSLEIDPAM 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
           +AA  L+  +             + +     +      + G     +F    W  + L V
Sbjct: 421 LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQ 532
           G +Q  + + ++  L    G+ + SIGAI++    TFV++            KL K  I+
Sbjct: 481 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTS--EAASKLSKLRIR 538

Query: 533 LKYLGGEKPDFRGY 546
            + +G    DF  +
Sbjct: 539 QQDVGAVVCDFDDF 552


>gi|255527323|ref|ZP_05394201.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255508970|gb|EET85332.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 527

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 152/555 (27%), Positives = 256/555 (46%), Gaps = 42/555 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   + +Q   +   L   D++  AQTG+GKT+AFG  + S +   
Sbjct: 10  NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +    AL + PTRELA+QV  EL  +       +    GG  + R+ + L+ G 
Sbjct: 67  ----ESSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S +  +VLDE+DEML++GF DDIE I+ S  K R+ L+F
Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA  Y K+ V+       +     I      V   DR  ++  IL     
Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G     +ATDVA
Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+  VI+ +L  + E+ +HR GRTGRA ++G++  ++        ++L +   
Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGF 420
             +  +  P+++ I E     +L+D    ++++ ++ K    +    D +     +AA  
Sbjct: 363 SKIKRKEIPTLDEIFEAKYNSMLKD--VKNTLEQNDYKDFIPVATGLDDDYNLVDVAAAL 420

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           +++                        D    F     S           LSVG   K  
Sbjct: 421 MKMLF----------------------DREFNFDYNEDSPVKSTKPVRLFLSVGRIDKVT 458

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
              ++  L  +S I+   +G I +    TF+++  D +D +            K L G K
Sbjct: 459 PVKILNFLEETSDIDVNEVGDIDIFDKFTFIDLPEDLLDAVLS------RSSGKRLNGRK 512

Query: 541 PDFRGYKSSGFKSKN 555
            +    KS    S  
Sbjct: 513 VNIEVAKSKNNHSHK 527


>gi|15608393|ref|NP_215769.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis H37Rv]
 gi|15840699|ref|NP_335736.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|148661040|ref|YP_001282563.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148822470|ref|YP_001287224.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|215403092|ref|ZP_03415273.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 02_1987]
 gi|215410888|ref|ZP_03419696.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445431|ref|ZP_03432183.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis T85]
 gi|218752952|ref|ZP_03531748.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|253799702|ref|YP_003032703.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|254231510|ref|ZP_04924837.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|254550260|ref|ZP_05140707.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289554958|ref|ZP_06444168.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289744998|ref|ZP_06504376.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289757351|ref|ZP_06516729.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|289761405|ref|ZP_06520783.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|297633802|ref|ZP_06951582.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
 gi|297730788|ref|ZP_06959906.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           R506]
 gi|298524756|ref|ZP_07012165.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775422|ref|ZP_07413759.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|306781666|ref|ZP_07420003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|306788337|ref|ZP_07426659.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|306792663|ref|ZP_07430965.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|306797070|ref|ZP_07435372.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|306802950|ref|ZP_07439618.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|306807140|ref|ZP_07443808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|306967339|ref|ZP_07480000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|306971531|ref|ZP_07484192.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|307079244|ref|ZP_07488414.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|307083813|ref|ZP_07492926.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|313658120|ref|ZP_07815000.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           V2475]
 gi|1706338|sp|Q11039|DEAD_MYCTU RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
           Full=ATP-dependent RNA helicase deaD homolog
 gi|1480333|emb|CAB00899.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium tuberculosis
           H37Rv]
 gi|13880887|gb|AAK45550.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|124600569|gb|EAY59579.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis C]
 gi|148505192|gb|ABQ73001.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis H37Ra]
 gi|148720997|gb|ABR05622.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis F11]
 gi|253321205|gb|ACT25808.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           1435]
 gi|289439590|gb|EFD22083.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           605]
 gi|289685526|gb|EFD53014.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           02_1987]
 gi|289708911|gb|EFD72927.1| cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289712915|gb|EFD76927.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis T85]
 gi|298494550|gb|EFI29844.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216042|gb|EFO75441.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu001]
 gi|308325627|gb|EFP14478.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu002]
 gi|308335025|gb|EFP23876.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu004]
 gi|308338833|gb|EFP27684.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu005]
 gi|308342518|gb|EFP31369.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu006]
 gi|308346383|gb|EFP35234.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu007]
 gi|308350324|gb|EFP39175.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu008]
 gi|308354954|gb|EFP43805.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu009]
 gi|308358901|gb|EFP47752.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu010]
 gi|308362864|gb|EFP51715.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu011]
 gi|308366530|gb|EFP55381.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           SUMu012]
 gi|323720210|gb|EGB29309.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902876|gb|EGE49809.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           W-148]
 gi|328459448|gb|AEB04871.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis KZN
           4207]
          Length = 563

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 267/570 (46%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +            G E  +++V+    +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|197337466|ref|YP_002157976.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
 gi|197314718|gb|ACH64167.1| cold-shock deAd box protein a [Vibrio fischeri MJ11]
          Length = 640

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 162/585 (27%), Positives = 273/585 (46%), Gaps = 35/585 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL + G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + +  + 
Sbjct: 13  LDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HN------PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P   + ++F
Sbjct: 127 HIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y +D  RV++A  N     ++    +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLRDPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q +R   +  +++G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           ++     P  + + E      A  +  D  F+      +         + D   IAA  L
Sbjct: 367 TMEEIQLPHRDQVAESRLAALAAELQADKEFVALDAFTDLINKLQETLEIDATTIAAMLL 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDS----------------RAFKVGGGSRDNFKG 465
           +  + G        P  +++  +R ++                     + G   + N   
Sbjct: 427 K-RQQGKRPLFYKGPDPMIAAMERAKNRRSDRGERGERGERGGRGDRPERGERRQYNNDD 485

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLL 521
              + L VG +Q  + + ++  L    G  + SIGAI++ P  T+V++     AD    L
Sbjct: 486 FDTYQLEVGREQGVQVKDIVGALANELGFTKGSIGAIKLAPGHTYVQLPKKMSADVAGKL 545

Query: 522 RRTVKLDKGIQLKYLGGEKPD-FRGYKSSGFKSKNSQDGATKRFK 565
           ++        +   + G      R  ++ G + +N   G   R  
Sbjct: 546 KKLRIRQNETKAVVVEGVDLTIERRPRTGGGRDENR--GGNSRGG 588


>gi|312892436|ref|ZP_07751930.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295070|gb|EFQ72245.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 615

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 161/607 (26%), Positives = 274/607 (45%), Gaps = 42/607 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F  +     I  A+++ G+ N T +QE  +   L    D +  AQTG+GKT AFGL 
Sbjct: 1   MNPFSQLGIRHDIVNAITDLGFENPTPIQEQSIPVLLTGSNDFVGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   L  E       + P AL + PTREL +Q+  +L+        V  V   GG ++  
Sbjct: 61  LLELLDFEQ------NHPQALILCPTRELCLQITNDLKNYSKNMSNVNVVAVYGGANISD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ G  IVV TPGR+ D I  K +N S +  VVLDEADEML++GF++DI+ IL ++
Sbjct: 115 QLRQIKRGVQIVVATPGRMLDIINRKAINFSDVNYVVLDEADEMLNMGFQEDIDSILSTT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  ++  +FSAT+   +  +AK Y  D   + +  +N  + +I++   +V   D+  A  
Sbjct: 175 PDDKKTWLFSATMPSEVRRIAKKYMTDPFELTMGEKNTGNVNIEHEYYIVRARDKYAAFK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ ++     IVFC T+       + L +  +   +L G+LSQQ+R   ++  R+   +
Sbjct: 235 RIVDFNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ D+  VI+  L    EN  HRSGRT RAG+ G+S+ +I      + 
Sbjct: 295 LLIATDVAARGIDVNDVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSKELGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ R      +    P+   + E+    I+     +   +   ++ +  ++ +    + 
Sbjct: 355 RQIERVIGKKFIKGEIPNGFDVCEKQLFAIVHKVHNVQVNEQQIEQYIPRIMDEFKDLEK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E I   F  I         +  P       DR        +   G        +   +++
Sbjct: 415 EDIIKRFASIEFNRFLDYYKNAPDLNAPLDDRAVRGELGDRAPRG--TGNSDYTRLFINL 472

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDK 529
           GS  +     L+  +C ++ I+ +++G I V+   +F EV    VD +    K      +
Sbjct: 473 GSVDEFNRGDLLGYICNTAKISGRTVGKIDVKGVYSFFEVPKADVDKVFAEFKDAEFKGR 532

Query: 530 GIQLKYLGGEKPD----------------------FRGYKSSGFKSKNSQDG-ATKRFKR 566
            ++++  G    D                        G++  G   +    G +   F+ 
Sbjct: 533 PVRIEISGEGTSDNRSGGGGGRRREGGYAGGGERKEGGFRREGGAPRERTGGNSGGGFRD 592

Query: 567 FKGASKN 573
           F G  + 
Sbjct: 593 FSGKRRE 599


>gi|269119742|ref|YP_003307919.1| DEAD/DEAH box helicase [Sebaldella termitidis ATCC 33386]
 gi|268613620|gb|ACZ07988.1| DEAD/DEAH box helicase domain protein [Sebaldella termitidis ATCC
           33386]
          Length = 530

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 267/538 (49%), Gaps = 24/538 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLAL 58
           K F ++   +   +AL ++G+ + +++Q  ++   L+E+ +++  AQTG+GKT AF + +
Sbjct: 4   KSFLDLGVSEATLKALDKKGFTSPSAIQTLVIPELLKERTNLIGQAQTGTGKTAAFAIPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             TL  +        +  A+ +APTRELA QV  E+  L  K  + V    GG S+ ++ 
Sbjct: 64  LETLDCDG-------SVRAIVLAPTRELANQVADEMYSLRGKKEIKVLPVYGGQSIDQQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  ++VGTPGR+ D +  K + +++L+  VLDEADEML++GF +DIE IL+ + +
Sbjct: 117 KKIKKGIDVIVGTPGRILDLMNRKVIKLNNLEYFVLDEADEMLNMGFIEDIELILERTNE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ML FSATI  +I  +AK + KD   + + ++    +  +     V   D+  A+  +
Sbjct: 177 DKKMLFFSATIPDSIMKIAKKFMKDYKLLKVKTKELTTNLTEQIYFEVTEGDKFEALCRV 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L Y      IVFC T++ V    + L    +   A+ G+++Q  R   L+  +  R  + 
Sbjct: 237 LDYVHDFYGIVFCRTKSDVDDVAQHLKGRGYDAEAIHGDITQAMRMKTLEDFKKKRINIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ DL  VI+  +   PE+ +HR GRTGRAG+KG+++  +      +  +
Sbjct: 297 VATDVAARGIDVNDLTHVINYSIPQEPESYVHRIGRTGRAGKKGIAITFVTPKEASKISK 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           + R     +  E  P +E +     + +      ++  +  G    M   LL   DPE +
Sbjct: 357 IQRLTKTDIKKEKIPKIEEVISVKKENLYACVEEIEKEEDFGYYTGMAKELLGDKDPEVV 416

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A  LR        PE    +S V               G  + +     +   +++G K
Sbjct: 417 LASLLRHMYDDEFLPESYNEISEVK-----------TGRGLNANNAGDDKTRLFIALGKK 465

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQL 533
                  L+ +L + +    + +  I++  + +F+ V     + + + + K +K   L
Sbjct: 466 DGYTPGKLLDLLNKKAKTPGRKVRDIKIMDNFSFITVPLREAEFIMKALNKSNKNKPL 523


>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 524

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 144/527 (27%), Positives = 259/527 (49%), Gaps = 36/527 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDKEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  +VLDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  A+  I
Sbjct: 180 KQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPE 414
           + R     +  +  P++E I E+    +L D      I+ ++ +    ++       D  
Sbjct: 360 IERITKSKIKKKELPTLEDILEKKYDNLLND--ITSKIEENKYEKFMPMVKTLEQNFDLS 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +++A  + +  +   + +                          ++   +      LSVG
Sbjct: 418 QVSAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVG 454

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
            K     + L+  +  ++ +    IG I +    TF++VS+   + +
Sbjct: 455 RKDSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|328470415|gb|EGF41326.1| ATP-dependent RNA helicase DeaD [Vibrio parahaemolyticus 10329]
          Length = 643

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 159/554 (28%), Positives = 270/554 (48%), Gaps = 20/554 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + 
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L  +  +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R 
Sbjct: 68  LDLDQRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAH+VVGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  
Sbjct: 122 LKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P +  + + + +D V V++A +N     +  +  +V   ++D A+  +L 
Sbjct: 182 QRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +A
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + 
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEK 415
           R    S+     P  + + E    ++  + L  +       K  +++       + DP  
Sbjct: 362 RVTKSSMEEIQLPLRDQVAEARLNKLAAE-LEAEKEHKALDKFAELVEKLQTSLEIDPAM 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
           +AA  L+  +             + +     +      + G     +F    W  + L V
Sbjct: 421 LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQ 532
           G +Q  + + ++  L    G+ + SIGAI++    TFV++            KL K  I+
Sbjct: 481 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTS--EAASKLSKLRIR 538

Query: 533 LKYLGGEKPDFRGY 546
            + +G    DF  +
Sbjct: 539 QQDVGAVVCDFDDF 552


>gi|83648397|ref|YP_436832.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636440|gb|ABC32407.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 593

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/572 (26%), Positives = 269/572 (47%), Gaps = 32/572 (5%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            + GY   + +QE  +   L+ + +L  AQTG+GKT AF L L   L  +        +P
Sbjct: 28  KDVGYEQPSPIQEQSIPLLLQGESILGVAQTGTGKTAAFALPLLERLDPK------IQSP 81

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGR 134
             + +APTRELA+QV    +           +   GG  +  + R L+ G  ++VGTPGR
Sbjct: 82  QIIVLAPTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGR 141

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH++ K L++S ++AVVLDEADEML +GF DD+E IL ++P + +  +FSAT+ PAI 
Sbjct: 142 VLDHLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAIK 201

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +A+ Y K A  V IA++      I    ++V  S + +A+  +L     +  I+F  T+
Sbjct: 202 RVAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVENFEGMIIFVRTK 261

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
           ++ +   + L    +   AL+G+ +Q+ R   +  ++ GR  + +ATDVAARG+D+  + 
Sbjct: 262 SATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKGRLDIVVATDVAARGLDVERIG 321

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LV++ ++  + E  +HR GRTGRAGR+G ++       +R    +       +    APS
Sbjct: 322 LVLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPKERRLLRAIESATKQPLTPYEAPS 381

Query: 375 VEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGF---LRIHRAG 427
            E I E+  Q+    L   L    +   +K ++D     +   E +AA     L++ +  
Sbjct: 382 AEKISEQRIQQFQENLHRTLDGQDLDSMKKVVLDFCKENELALEDVAAALAFRLQVEQPL 441

Query: 428 LCAPEEITPVSLV-------------SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
               +++  +                + RDR R      +     RD+      + + VG
Sbjct: 442 FPILKDLPKLDKDFRGRDRDRDGRGRNPRDRDRRGREGREGRDSRRDDGIPRERYRIEVG 501

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKG 530
                    ++  +   + I  + IG I +  + + VE+      + +  L++     + 
Sbjct: 502 RSHDVSPGDIVGAIANEANIESKYIGHIAIYDNFSTVELPEGMPKEVLQHLQKVRIRQQL 561

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
           I +K   G KP+ +    SG           +
Sbjct: 562 INMKPDAG-KPERKPRSGSGRGGPRPSSKRPR 592


>gi|150017770|ref|YP_001310024.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904235|gb|ABR35068.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 524

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 145/529 (27%), Positives = 250/529 (47%), Gaps = 37/529 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +   + I +A+   G+   + +Q  ++   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KVFSELGLDENILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGAPVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S + +   + S      ++ + PTRELA+QV  EL  +   T + +    GG  + R+  
Sbjct: 64  SRIRSSEGKIS------SIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQIS 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ D IR K LN+  +K +VLDEADEML++GF DDIE I+ +S + 
Sbjct: 118 ALRRGIDIVVGTPGRVLDLIRRKVLNLGSIKFLVLDEADEMLNMGFIDDIEEIIKNSNQD 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ ++FSAT+   I  LAK Y K   +           + +D     +   DR   +  I
Sbjct: 178 RQTMLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRI 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+FC T+ +V    + L    +    + G+++Q +R N L+  ++G     
Sbjct: 238 LDVDEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGSLEFL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++  VI+ +L  + E+ +HR GRTGRA RKG++  ++        + 
Sbjct: 298 IATDVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKH 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE---- 414
           + +     +     P+V+ I     + +       ++++ D  K    +  + D E    
Sbjct: 358 IEKVTKSKIRRREIPTVDEIFVSKYKNMFSK--IKETLEQDSYKKFIPMATELDEEFNLV 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++AA  + +  +     +                             +        L+VG
Sbjct: 416 EVAAALMDMVYSKEVNYDYTE----------------------NEIGSKTDYKRLFLNVG 453

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              K   R L+     ++ + R+ +G I +    +FV V+    + + +
Sbjct: 454 RLDKINPRKLVDFFNENAKVKREDVGDIDILEKFSFVNVTEAAAESIMK 502


>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 603

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/517 (29%), Positives = 255/517 (49%), Gaps = 12/517 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDR 68
            +  A+SE G+   + +QE  +   L   D  +  AQTG+GKT AFGL L   L      
Sbjct: 12  EVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQLDFSQ-- 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHI 127
                 P AL + PTREL +Q+ ++LE        V  V   GG ++  + R ++ G  I
Sbjct: 70  ----KHPQALVLCPTRELCLQIAKDLEKFAKYIDDVHVVAVYGGANISDQLRQIRRGVQI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D I    ++ S++K VVLDEADEML++GF++DI  IL  +P++++  +FSA
Sbjct: 126 VVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  +A+NY  D V + + ++N  +++I++   L+   D+  A   I+  +     
Sbjct: 186 TMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+       + L +  +   +L G+LSQQ+R   ++  RD   ++ IATDVAARG
Sbjct: 246 IVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+  L    EN  HRSGRT RAG+ G+S+ ++      +   + +      
Sbjct: 306 IDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPF 365

Query: 368 VWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             +  P    + E+    I   +++    D         +   L     E I   F  + 
Sbjct: 366 ERKQVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPTIMENLEALSKEDIIKRFASLE 425

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                   +  P   +  RD  R + R  +    SR   KG +   +++GS  +     +
Sbjct: 426 FNRFLDYYKNAPDLNIEARDNERGE-RGDRREDRSRGGSKGYTRLFMNLGSVDEFTRGDM 484

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
           +  +C ++ I+ +SIG I ++   TF EV  + V+ +
Sbjct: 485 LGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVEKV 521


>gi|254774280|ref|ZP_05215796.1| ATP-dependent rna helicase, dead/deah box family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 542

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 149/552 (26%), Positives = 258/552 (46%), Gaps = 22/552 (3%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             A+++ GY   T +Q A +   +   DV+  AQTG+GKT AF + + S +         
Sbjct: 1   MRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPILSNIDVA------ 54

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVG 130
           ++A  AL +APTRELA+QV        A    +  +   GG S   +   L+ GAH+VVG
Sbjct: 55  STATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAVQLAGLKRGAHVVVG 114

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH+    LN+SH+  +VLDEADEML +GF ++++ IL  +P+ +++ +FSAT+ 
Sbjct: 115 TPGRVIDHLERGTLNLSHVDYLVLDEADEMLTMGFAEEVDRILSETPEYKQVALFSATMP 174

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PAI  L   Y  D + V+  ++     +I  R + VA   + +A+  +L     +  IVF
Sbjct: 175 PAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALTRVLEVEPFEAMIVF 234

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +     + L    F   A++G++ Q +R   +  ++DG   + +ATDVAARG+D+
Sbjct: 235 VRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGIDILVATDVAARGLDV 294

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + + +     +   
Sbjct: 295 ERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIEKATRQPLTEA 354

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEKIAAGFLRIHRA 426
             P+VE +  +   +            G +  +K+V     +HD     IAA      R 
Sbjct: 355 ELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVPMADIAAALAVQSRD 414

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G         +         R+     +       + +  + + ++VG + K     ++ 
Sbjct: 415 GEEF------LMAPEPPRERRERHTERRERTEKPRSTRPLATYRIAVGKRHKIGPGAIVG 468

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            +    G++R   G I + PD + VE+ A      +  L +T      I L+        
Sbjct: 469 AIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGVLINLQPDRAAAK- 527

Query: 543 FRGYKSSGFKSK 554
            RG      + K
Sbjct: 528 ARGRDGGKPRRK 539


>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
          Length = 524

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 147/525 (28%), Positives = 257/525 (48%), Gaps = 32/525 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDKEKK----KGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  A+  I
Sbjct: 180 KQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKI 416
           + R     +  +  P++E I E+    +L D          EK   MV  L    D  ++
Sbjct: 360 IERITKSKIKKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTLEQNFDLSQV 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +A  + +  +   + +                          ++   +      LSVG K
Sbjct: 420 SAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVGRK 456

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                + L+  +  ++ +    IG I +    TF++VS+   + +
Sbjct: 457 DSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|311747453|ref|ZP_07721238.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
 gi|126574812|gb|EAZ79183.1| ATP-dependent RNA helicase, DEAD/DEAH family [Algoriphagus sp. PR1]
          Length = 580

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 157/566 (27%), Positives = 262/566 (46%), Gaps = 47/566 (8%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I +++ E GY   + +Q   +   L  +DV+  AQTG+GKT AFG+ +   
Sbjct: 7   FSDLGISSEILKSVEEMGYTQPSQIQSQAIPFVLDGRDVIGQAQTGTGKTAAFGIPIIDL 66

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +  + ++        A+ + PTRELAVQV  E++ L      + +V   GG S+ R+ R 
Sbjct: 67  VDPDFNKV------QAVILCPTRELAVQVEGEIQKLAKYHRKINSVAIYGGESIDRQIRV 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DHI    L + +   +VLDEADEMLD+GFRDDIE IL   P+KR
Sbjct: 121 LRKGVQIVVGTPGRVQDHINRGTLKLENTGIIVLDEADEMLDMGFRDDIEAILQEMPEKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSAT++  I  L + YQ +   + +A +      I+     V  S +   +  ++ 
Sbjct: 181 QTVFFSATMAKPILDLTRKYQNNPEIIKVAKKELTVDRIEQVFYEVKPSLKLELMARLMN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +    ++VFC+T+      T+ L        AL G+LSQ +R   +   R G   V +A
Sbjct: 241 VNNYALSVVFCNTKRMTDEATEALGSRGILAEALHGDLSQAQRDKVMNKFRKGLCTVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERL 359
           TDVAARGID+ ++E V + +L  + E+ +HR GRTGRAG+ G ++  +  +    +   L
Sbjct: 301 TDVAARGIDVDNVEAVFNFDLPLDDESYVHRIGRTGRAGKSGKAINFVTGRRDFGKIRDL 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEK 415
            R    S+     PSV  + E    + ++D   + S + D    E+ +  +L      E+
Sbjct: 361 ERFTKASIAKMDPPSVSDLIELKKAQFVKDVHTVISKEEDNQIFEETVGQLLTEGLSIEQ 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-------------- 461
           IA G +++              SL S  +  R +    +  G                  
Sbjct: 421 IALGLMKLQMGDAVKEMRDQDFSLSSYGNDRRREGGRNERFGRGERGERGRGERGERGGR 480

Query: 462 -------------------NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAI 502
                                       +++G K +     ++  +   +G+  +SIG I
Sbjct: 481 REGGRREGGRSEGGRRERVREANMERLFINLGRKDRIRPNDIVGAIAGEAGVPGRSIGGI 540

Query: 503 RVQPDLTFVEVSADGVDLLRRTVKLD 528
            +  + +FV+V       + + +K +
Sbjct: 541 DIYDNFSFVDVPQKDAAHVIQVMKSN 566


>gi|262396820|ref|YP_003288673.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
 gi|262340414|gb|ACY54208.1| cold-shock DEAD-box protein A [Vibrio sp. Ex25]
          Length = 644

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 156/557 (28%), Positives = 269/557 (48%), Gaps = 20/557 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + 
Sbjct: 8   FSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +     +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R 
Sbjct: 68  IDLNQRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GA ++VGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  
Sbjct: 122 LKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESA 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P +  + + + ++ V V++A +N     +  +  +V   ++D A+  +L 
Sbjct: 182 QRVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +A
Sbjct: 242 TEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + 
Sbjct: 302 TDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEK 415
           R    S+     P  + + E    ++  + L  +       K  +++         DP  
Sbjct: 362 RVTKSSMEEIQLPLRDQVAEARLAKLGAE-LEAEKEHKALDKFAELVEKLQTSLDIDPAT 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSV 473
           +AA  L+  +             + +     +      + G     NF    W  + L V
Sbjct: 421 LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV 480

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQ 532
           G +Q  + + ++  L    G+ + SIGAI++    TFV++            KL K  I+
Sbjct: 481 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTS--EAAGKLSKLRIR 538

Query: 533 LKYLGGEKPDFRGYKSS 549
            + +G    DF  ++ S
Sbjct: 539 QQDVGAVVCDFDDFRES 555


>gi|260204506|ref|ZP_05771997.1| hypothetical protein MtubK8_09388 [Mycobacterium tuberculosis K85]
 gi|289573913|ref|ZP_06454140.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
 gi|289538344|gb|EFD42922.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis K85]
          Length = 563

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 157/570 (27%), Positives = 267/570 (46%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +PK 
Sbjct: 128 GLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +            G E  +++V+    +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|110638001|ref|YP_678208.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280682|gb|ABG58868.1| ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 580

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 166/592 (28%), Positives = 281/592 (47%), Gaps = 67/592 (11%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++     + EA+   GY   T +QE  +   +  KD+   AQTG+GKT AFG+    
Sbjct: 2   LFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
            +          +   +L + PTRELA+QV  EL+ L     G+ V    GG S+ R+ R
Sbjct: 62  HVDIS------INQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ GAHIVVGTPGR+ DH+  + LN SHL  ++LDEADEML++GFR+DIE IL   P++
Sbjct: 116 DLKAGAHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEE 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT++P I  LAK +Q +   + I  +    S ++    LV  S +   +  I+
Sbjct: 176 RQTVLFSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQII 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  ++FC+T+  V   T  L  +    ++L G+ +Q++R+  +   R G A + +
Sbjct: 236 DLNNLQLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  ++ VI+ ++  + EN +HR GRTGRAG+ G S  ++  + + +   +
Sbjct: 296 ATDVAARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDI 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI-------LQDP---LFLDSIQGDEKKMVDVLLA 409
            R    ++     P+ + +      ++       L+ P   ++ D ++  ++K +     
Sbjct: 356 ERYTKATIEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGI----- 410

Query: 410 KHDPEKIAAGFLRIHRAGLCAPE----------------------------EITPVSLVS 441
               ++IA   L      L  PE                               P     
Sbjct: 411 --TADQIAIALLSKEMKDLAEPERRVFEDRGDRRDRGDRGDRGGRFDRGDRRDGPRRDGR 468

Query: 442 GRDRFRDDSRAFKVGGGS---------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
             DRF D   A +   G          R +    +   ++VG   +     ++      +
Sbjct: 469 SSDRFGDRPAASRDRDGGERRERTPRPRTSDASMARLFVNVGRIDRISPGDIVGAFAGEA 528

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD----KGIQLKYLGGEK 540
            I    IG I +    +FVE+  D VD +   ++ +    K I ++   G++
Sbjct: 529 NIKGSQIGQIDIFDKYSFVELPHDLVDQVMDGMRNNKIKGKSINIEISNGKQ 580


>gi|152986038|ref|YP_001347685.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961196|gb|ABR83221.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 553

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 265/543 (48%), Gaps = 20/543 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A++  GY   + +Q   +   L   D++  AQTG+GKT AF L L S +    
Sbjct: 13  IHPNVLAAITAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSRIDPSR 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGA 125
                   P  L + PTRELA+QV    E    +   V  V + G   +  + + L+ GA
Sbjct: 73  ------REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRLCDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + K    V IA++ +  + I+   ++V    +  +I  +L      
Sbjct: 187 SATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVAA
Sbjct: 247 ALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V++ ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
            V     P  E + E    R+       L+S       + D L  + D +        + 
Sbjct: 367 KVGEVRLPDPETVLEARLARLAASLSPLLESAVAQRGAVRDELCRRLDCDAETLAAALLA 426

Query: 425 RA------GLCAPEEITPVSLVSGRDRFRDDSRAFKVG--GGSRDNFKGSSWFSLSVGSK 476
           R        L +     P++  + R+R     R  + G         +G +    ++G++
Sbjct: 427 RLTAGKALDLESVRREQPLTPSAPRERAERGERPERSGERRPMAPPSEGRARCRTALGAR 486

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDKGIQ 532
               A+ L+  +    G++R+ IG I+++   + +E+    ++ L      T    K ++
Sbjct: 487 DGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGKALR 546

Query: 533 LKY 535
           L+ 
Sbjct: 547 LRR 549


>gi|31792446|ref|NP_854939.1| cold-shock DEAD-box protein A [Mycobacterium bovis AF2122/97]
 gi|121637182|ref|YP_977405.1| putative cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|215430135|ref|ZP_03428054.1| hypothetical protein MtubE_05528 [Mycobacterium tuberculosis
           EAS054]
 gi|224989657|ref|YP_002644344.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|260186187|ref|ZP_05763661.1| hypothetical protein MtubCP_09173 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289446844|ref|ZP_06436588.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289753325|ref|ZP_06512703.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
 gi|31618035|emb|CAD94146.1| PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent
           RNA helicase deaD homolog) [Mycobacterium bovis
           AF2122/97]
 gi|121492829|emb|CAL71300.1| Probable cold-shock dead-box protein a homolog deaD [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|224772770|dbj|BAH25576.1| putative cold-shock dead-box protein a homolog [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|289419802|gb|EFD17003.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289693912|gb|EFD61341.1| cold-shock DEAD-box protein A [Mycobacterium tuberculosis EAS054]
          Length = 563

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 267/570 (46%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +            G E  +++V+    +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|296121514|ref|YP_003629292.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296013854|gb|ADG67093.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 608

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 168/596 (28%), Positives = 277/596 (46%), Gaps = 44/596 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  A++  GYVN T +Q   +   +  +DVL  AQTG+GKT AF + +   +   
Sbjct: 18  NISPPILSAVTASGYVNPTPIQARTIPLLIEGRDVLGMAQTGTGKTAAFAIPMLQAIDLS 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
                 +SA   L +APTRELA+QV    E   A   G+ VA   GG     + R L  G
Sbjct: 78  ------SSATQVLILAPTRELAMQVAEAFEKYAANLKGLRVAAIYGGQDYQLQFRQLNRG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ DHIR   L +  LK +VLDEADEML +GF +D+E+IL+ +P +R++ +
Sbjct: 132 AHVIVGTPGRVMDHIRRGSLKLDSLKGLVLDEADEMLRMGFAEDVEWILEQTPSQRQIAL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  +A+ + K+   + I         I  R + V    ++  +  IL     
Sbjct: 192 FSATMPDSIRRIAQKHLKNPAEITIKRRTATAETIRQRFITVPPFQKEAVLARILETEPI 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+++     + LA   ++  ALS ++ Q +R   ++ ++ GR  + IATDVA
Sbjct: 252 DAVIIFVKTKSTTVPLAEFLASQGYRTAALSSDVPQAQRERIVEHLKSGRLDIVIATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L S+ E+ +HR GRTGRAGR+G ++  +    + +  R+ +   
Sbjct: 312 ARGLDVQRITHVINFDLPSDSESYVHRIGRTGRAGRQGDTILFLHPRERFQLRRIEQVTR 371

Query: 365 VSVVWEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDP-- 413
             +     P+   + ER  +R           +D      I    +K  D  + +     
Sbjct: 372 QPIEPMQVPAAAQVNERRIERFKSKIKTALDHRDLEAFSGIIESLQKESDTPIEQIAAAL 431

Query: 414 ------------EKIAAGFLRIH-RAGLCAPEEITPV------SLVSGRDRFRDDSRAFK 454
                       +     F  I  R    AP    P       +  S R R R+  R  +
Sbjct: 432 AVLAAGDAPLLVKDDIRDFNSIETRNREPAPGRGNPRLARAQDAERSMRPRGREAGREER 491

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                  +F+    F + VG   + +   ++  +   +G++   IG I +  + + V++ 
Sbjct: 492 APRSEGRSFRPMETFRIQVGQIHQVKPANIVGAIANETGLDSSCIGRIEIYDNYSTVDLL 551

Query: 515 ADGVDLLRRTVK----LDKGIQLKYLGGEKP--DFRGYKSSG-FKSKNSQDGATKR 563
           A   D +  ++K    L + + +          +F   KS G F SK +     +R
Sbjct: 552 AGMPDDVFHSLKAVEVLGQQLNISRATEHPANEEFSARKSKGRFDSKRNLKPNQQR 607


>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 603

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 154/517 (29%), Positives = 255/517 (49%), Gaps = 12/517 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLALASTLLAENDR 68
            +  A+SE G+   + +QE  +   L   D  +  AQTG+GKT AFGL L   L      
Sbjct: 12  EVVNAISELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLPLLEQLDFSQ-- 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHI 127
                 P AL + PTREL +Q+ ++LE        V  V   GG ++  + R ++ G  I
Sbjct: 70  ----KHPQALVLCPTRELCLQIAKDLEKFAKYIDGVHVVAVYGGANISDQLRQIRRGVQI 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGR+ D I    ++ S++K VVLDEADEML++GF++DI  IL  +P++++  +FSA
Sbjct: 126 VVATPGRMLDIIGRNAIDFSNVKYVVLDEADEMLNMGFQEDINNILSETPEEKKTWLFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  +A+NY  D V + + ++N  +++I++   L+   D+  A   I+  +     
Sbjct: 186 TMPREVRRIAQNYMTDPVELTVGTKNTGNANIEHHYYLIRAKDKYAAFKRIVDSNPEIFG 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+       + L +  +   +L G+LSQQ+R   ++  RD   ++ IATDVAARG
Sbjct: 246 IVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRDRSLQLLIATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+  L    EN  HRSGRT RAG+ G+S+ ++      +   + +      
Sbjct: 306 IDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKIIGKPF 365

Query: 368 VWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             +  P    + E+    I   +++    D         +   L     E I   F  + 
Sbjct: 366 ERKQVPQGAEVCEKQLFSIVSKIENVEVNDDQITPFLPAIMENLEALSKEDIIKRFASLE 425

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                   +  P   +  RD  R + R  +    SR   KG +   +++GS  +     +
Sbjct: 426 FNRFLDYYKNAPDLNIEARDNERGE-RGDRREDRSRGGSKGYTRLFMNLGSVDEFTRGDM 484

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
           +  +C ++ I+ +SIG I ++   TF EV  + V+ +
Sbjct: 485 LGFICNNAKISGKSIGKIDLKGVFTFFEVQDEEVEKV 521


>gi|89891288|ref|ZP_01202795.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516600|gb|EAS19260.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 644

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 160/529 (30%), Positives = 269/529 (50%), Gaps = 13/529 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           +K FE   + Q +   L++ G+ N T +Q+  +   L+   D +  AQTG+GKT AFGL 
Sbjct: 12  LKNFEVLGLSQPLLNGLADMGFENPTEIQQQSIPILLKHDGDFIGLAQTGTGKTAAFGLP 71

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +   +          AL +APTRELA Q+  ++E +    G +  V   GG ++  
Sbjct: 72  LLDLIDVNSREV------QALILAPTRELAQQICGQMEQMSKHLGKLNVVPVFGGANIMN 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RD++ GA I+V TPGRL D ++ + + +  LK +VLDEADEML++GF++DI+FIL  S
Sbjct: 126 QIRDIRRGAQIIVATPGRLMDLMKRREVKLDALKYMVLDEADEMLNMGFKEDIDFILSKS 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R + +FSAT++  I  +   Y      V I  +N  + +I+++++ +  SD+  A+ 
Sbjct: 186 DTGRNIWLFSATMAREIKRIVDTYMVQPEEVRINPKNIVNKNIEHQSIQLKASDKIEALR 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L Y      +VFC T+         L  + +   AL G++SQ +R  A++  R+   +
Sbjct: 246 RFLDYDEDMFGVVFCRTKRDTQNVADQLNNNGYATEALHGDMSQAQRDAAMKRFRNKNLK 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ D+  VIH  L  +PE   HRSGRT RAG+KG+S+ +I +   R+ 
Sbjct: 306 LLIATDVAARGIDVDDITHVIHFALPDDPEFYTHRSGRTARAGKKGVSIALITRGDNRKL 365

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL---DSIQGDEKKMVDVLLAKHDP 413
           + +  +  +       P++EAI ++   R  ++ +     + I       V    A    
Sbjct: 366 KFIASKLGIEFTQGEVPALEAITQKRISRWSENMIKQEINEKIDEQLVNAVQESFADVTK 425

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E+I A  L      +     I+ ++  S      D  R  +    SR   +G   + +++
Sbjct: 426 EEIIAKLLTKEYNSIYKRNSISDLNDRSKGRDRDDSPRRERGKRTSRGTEEGMKTYFINL 485

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           G K       L+  +C ++GI+   IG I +    ++++V+ D    + 
Sbjct: 486 GLKDDINKGALLGYVCDTTGISGAQIGRIVMDKTHSYMDVAEDVASQIL 534


>gi|302038923|ref|YP_003799245.1| DEAd-box RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606987|emb|CBK43320.1| DEAD-box RNA helicase [Candidatus Nitrospira defluvii]
          Length = 576

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 162/558 (29%), Positives = 263/558 (47%), Gaps = 33/558 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY   T +Q   + P L  +D+L  A TG+GKT AF L L   +    
Sbjct: 26  LEASLLTTLEALGYEEPTPIQREAIPPLLEGRDLLGQAATGTGKTAAFALPLLQRIAH-- 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P AL + PTRELAVQV   ++    +  + V    GG ++  + + L+ G  
Sbjct: 84  ---GPRQRPTALVLVPTRELAVQVSEAVQRYGKELRIGVLALYGGQAMGPQLQALRRGVE 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGR  DH+R K L ++ L+ VVLDEADEMLD+GF DD++ IL+ +P  ++  +FS
Sbjct: 141 VIVATPGRALDHLRRKTLKLADLQVVVLDEADEMLDMGFADDLDAILEQTPAGKQTALFS 200

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+ P I ++A+ + K+ V V IA E  +      +   A +VA   + +A+  +L    
Sbjct: 201 ATMPPRIASIARRHLKNPVDVTIAREPVKAGAAPRVQQTAYVVARQHKVSALARVLDIAT 260

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K+A+VFC TR  V   T  L    ++  A+ G +SQ +R   +Q  R G+  + +ATDV
Sbjct: 261 PKSALVFCRTRLEVDEVTAALNGRGYRAEAIHGGMSQVQRDRVMQAFRSGQTELLVATDV 320

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  VI+ +L S+ E  +HR GRTGRAGR+G ++ +I    QR    + +  
Sbjct: 321 AARGLDIPSVSHVINYDLPSSLEVYVHRIGRTGRAGREGAAMTIIEPREQRLLRAVEQHT 380

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA----- 418
              +     PS+  +  +  +R        ++++  E +    ++         A     
Sbjct: 381 KAKITVAAVPSLGDLLAKRLERTKAS--IQETLEAGELEDFRRVVEALSASAEPADIAAA 438

Query: 419 --GFLRIHRAGLCAPEEI------TPVSLVSGRDRF------RDDSRAFKVGGGSRDNFK 464
               +     G  A EEI       P    S R  +       D +RA + G        
Sbjct: 439 AIKLVYRSHGGERAEEEIPAVSTRPPEPYRSSRPSYGSAPQQGDRARAPRGGPSRGGRAA 498

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DL 520
           G+    +  G         L+  +   +G+  + IGAI V+   + V+V  +      + 
Sbjct: 499 GTVRVYVGAGRAAGIRPGDLVGAIANEAGVPSRMIGAIEVEERFSLVDVQEEAARQVIEA 558

Query: 521 LRRTVKLDKGIQLKYLGG 538
           L RT    + + ++    
Sbjct: 559 LGRTRIKGQRVAVRLFRD 576


>gi|310779133|ref|YP_003967466.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748456|gb|ADO83118.1| DEAD/DEAH box helicase domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 526

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 148/534 (27%), Positives = 252/534 (47%), Gaps = 30/534 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           +K F+   + +     L E+G+   + +Q   +   L   KDV+  AQTG+GKT AF L 
Sbjct: 4   LKEFKALGLSEKTLRPLLEKGFEKPSPIQALTIPVLLNGDKDVIGQAQTGTGKTAAFSLP 63

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +              A+ +APTRELAVQV  E+  L     + +A   GG S+  +
Sbjct: 64  ILEKIEKSTGSI------QAIVLAPTRELAVQVAEEMNSLSHGRNLRIAPVYGGQSIEFQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  +VVGTPGR+ D +  K L +  +   +LDEADEML++GF +D+E IL ++ 
Sbjct: 118 IKQLRRGIDVVVGTPGRVIDLMNRKILKLDKIDYFILDEADEMLNMGFLEDVEMILQNTS 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K +RML FSAT+   I  +AK +  +   + +       +  D     V   D+  A+  
Sbjct: 178 KDKRMLFFSATMPKEILRVAKKHMGEHEVLAVKKTELTTNLTDQIYFEVKEKDKFEALCR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        IVFC T+  V+     L +  +    L G++SQ  R   L+  ++ +  V
Sbjct: 238 IMDLELDFYGIVFCRTKNDVNVLVGKLQDRGYDSEGLHGDISQNHREITLKRFKEKKINV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ DL  VI+  +  +PE+ +HR GRTGRAG++G ++  I  +  R+  
Sbjct: 298 LIATDVAARGIDVNDLSHVINYAIPQDPESYVHRIGRTGRAGKEGTAITFITPSEYRKIL 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ R     +  E  P V+ + +    R+ ++   +  +      ++M + LL    P  
Sbjct: 358 QIQRIVKTEIRKEKVPGVKEVIQAKKNRMREELNEILDERKYEGFQEMAEELLEGESPAD 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  L      L                    D   ++     + +  G S   +++G 
Sbjct: 418 VVAALLTHSYQDLL-------------------DENNYRDIDNVQVDKTGKSRLFIALGK 458

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           K K   + ++ M+ + + I+   I  + V  + +F+ V     + +  T K ++
Sbjct: 459 KDKITPKKIVDMIKKKTTISEHKIKKVEVYENFSFMTVPFIEAEEILETFKKER 512


>gi|312881457|ref|ZP_07741251.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370879|gb|EFP98337.1| ATP-dependent RNA helicase DeaD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 620

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 164/600 (27%), Positives = 286/600 (47%), Gaps = 46/600 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   ++  D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNDAILSALDGMGFVSPTPIQAASIPHLMKGSDALGKAQTGTGKTAAFSLPLLNKLELSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  + R L++GA
Sbjct: 73  RK------PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQMRALKSGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + ++ + +++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKNIVERFLRNPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI------LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           ++     P  + +     +++       ++   L+      +K+ D L  + D   +AA 
Sbjct: 367 TMEEIQLPHRDKVAAARLEKLGAELETEKEHKALEKFTELVEKLQDTL--ELDAATLAAI 424

Query: 420 FLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-----NFKGSSWFSLSV 473
            L+  +           P+     RD+ R   R      G R+     N +    + L V
Sbjct: 425 LLKRQQGKRPLFYIGADPMIEAIERDKQRRKERRESGRDGRREGGRSFNNQDWDTYQLQV 484

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRTVKLDKGIQ 532
           G +Q  + + ++  L    G+ + SIGAI++    T+V++      +   +  KL   I+
Sbjct: 485 GREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSETAGKLRKL--RIR 542

Query: 533 LKYLGGEKPDFRGYKS-------------------SGFKSKNSQDG---ATKRFKRFKGA 570
            K +     DF  ++                     G + + +  G     +RF R +G 
Sbjct: 543 QKQVDAVVCDFNDFREPRGRRDSGRRDGGGYRGNREGGRREGNFRGNREGERRFDRNRGG 602


>gi|300727507|ref|ZP_07060898.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775210|gb|EFI71811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 622

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 162/589 (27%), Positives = 271/589 (46%), Gaps = 28/589 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+SE G+ +   VQE ++   L RE DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSKDICRAISELGFEHPMPVQEEVIPYLLSRESDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           +                   + ++PTREL +Q+  +L        G+ +    GG  +  
Sbjct: 61  VLQNTDPST------KITQTVILSPTRELCLQIADDLNEFAKYIDGMHIVAVYGGTDIGS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D +      + +++ +VLDEADEML++GF + I  I +  
Sbjct: 115 QIRTLKHGVQIIVATPGRLVDLMNRGVAKLENVQNIVLDEADEMLNMGFSESINTIFEGL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K    L+FSAT+S  +  +AKNY  +   + + S N     +++   +V+  D+  A+ 
Sbjct: 175 SKDHITLLFSATMSKEVERIAKNYLHNHKEIVVGSRNEGAEHVNHIYYMVSAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H     I+FC T+         L +  +   AL G+LSQQ+R   +Q  R+   +
Sbjct: 235 RIVDFHPRIFGIIFCRTKVETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ +L  VI+  L  + E+  HRSGRTGRAGRKG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDELTHVINYGLPDDIESYTHRSGRTGRAGRKGTSISIIHVKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDP 413
            ++ ++     +    P  E I ++   +++ D +  D    +     + ++      D 
Sbjct: 355 RQIEKQIGKEFIAGELPKAEEICKKQLYKVMNDIMKTDVDEDMIAPYMEDINRQFEYIDK 414

Query: 414 EKI-----AAGFLRIHRAGLCAPEEITPVSLVSG--RDRFRDDSRAFKVGGGSRDNFKGS 466
           E I     A  F +       APE I P    S    +R     R      G R    G 
Sbjct: 415 EDIIKKMVAVTFGKFLDYYKNAPEIIQPTGKSSEIRSERGGKGDRRNDRSRGPRKAEPGY 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +++G         +M  L ++   NRQ++G I +    +++EV     + +  T+ 
Sbjct: 475 RRLFINLGKADGFYPGEVMQFLNKNMK-NRQAVGHIDLLSKFSYIEVPEKDANKVISTIN 533

Query: 527 LD--KGIQLK-----YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
               KG +++       G  +   R  +    +  +  D      K  K
Sbjct: 534 GLEYKGREVRCNDADEAGHGRNSGRSERRGSGRKGDRHDRKNSYPKGGK 582


>gi|320534382|ref|ZP_08034868.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320133424|gb|EFW25886.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 861

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 165/619 (26%), Positives = 280/619 (45%), Gaps = 54/619 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ + +A+++ G+V  T++Q+  +   L  +DV+  AQTG+GKT AFGL L  
Sbjct: 162 TFTDLGLPRDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLD 221

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       S  S   AL +APTRELA+Q    +  + A++  +  V   GG     +  
Sbjct: 222 AVD------SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIG 275

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I  S P  
Sbjct: 276 ALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAQSLPTD 335

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L
Sbjct: 336 RRTALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVL 395

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +
Sbjct: 396 AVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLV 455

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V  +    + +  ++
Sbjct: 456 ATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQI 515

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--------------PLFLD-----SIQGDE 400
            R     +     PS   + E  A+++L                PL  D      I  +E
Sbjct: 516 ERLTGSRLEEITLPSPADVSEHRARKLLSKAAARHERGRLDMYLPLVTDCAQELDIDVEE 575

Query: 401 KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITP-------VSLVSGRDRFRDDSRAF 453
                + LA  D            R      EE           S   GR++ R   R  
Sbjct: 576 LAATLLALAVGDEGPRRREDRGGERPQRARREENLDSEGTFLSASFEGGREKNRRGDRGD 635

Query: 454 KVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           +  G       G R++    + + + VG + +     ++  L    GI    IG I +  
Sbjct: 636 RGEGRRSATRSGRREHEGPGTVYRVEVGHRDRVLPGAIVGALANEGGIEGSDIGKIDILQ 695

Query: 507 DLTFV----EVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKS--------K 554
             + V    E+S + + ++ R     + ++++   G    + G   +  +         K
Sbjct: 696 SFSLVTIYAELSPEQLSVMGRATFAGRELRIRPDEGPGHGWSGPNGAERRPKWRDWDDRK 755

Query: 555 NSQDGATKRFKRFKGASKN 573
           +  +   +  + F+    +
Sbjct: 756 DRSERGERPDRGFRPRRDD 774


>gi|288942738|ref|YP_003444978.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288898110|gb|ADC63946.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 662

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 149/621 (23%), Positives = 266/621 (42%), Gaps = 68/621 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  VI +A+   GY + T++Q   +   L  +D+L  AQTG+GKT AF L + S L  + 
Sbjct: 16  LSPVIAQAVKNLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKTAAFALPMLSRLDPD- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV    +           +   GG     +   L+   
Sbjct: 75  -----LRKPQVLVLTPTRELALQVAEAFQRYATDLKGFNVLPIYGGQGYGLQLSQLKRNP 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DHIR   L +  ++A+VLDEADEML++GF +DI++I D +P +R++ +F
Sbjct: 130 QVIVGTPGRVMDHIRRGTLALDSIRALVLDEADEMLNMGFAEDIDWIFDQAPAERQVALF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A+    D V V IA+ +     I+    +V    + + +  I+      
Sbjct: 190 SATMPPAIRRVAQTRLVDPVEVKIAANSETVDTIEQHHCIVTRFHKLDVLTRIMELEPFD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ + +     L  H F    L+G+++Q+ R   ++ ++ G+  V +ATDVAA
Sbjct: 250 GLLIFVRTKNATTELADKLKAHGFAAEPLNGDMNQEMRERTVERLKQGQLDVLVATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++P   +HR GRTGRAGR G ++ ++    +   + + R    
Sbjct: 310 RGLDVERISHVVNYDIPTDPSAYVHRIGRTGRAGRAGRAILLVEPRERGLLKSIERVIRR 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE------KIAAG 419
            +     PS  A+ E    R + +     S    +      LLA+   E       IAA 
Sbjct: 370 PIPSMEPPSAAALSESRIDRFIGEIRKAQS--EQDLDFFYRLLARISQEQEIEMLDIAAA 427

Query: 420 FLRIHRAGLCAPEEITPVSLV--------------------------------------- 440
              +++       +  P                                           
Sbjct: 428 LAYLNQRERPLNVKEDPPRPPKRFDERGERGRGRDGDRRQGGWEDRPPRRERFDERDGNR 487

Query: 441 -SGRDRFRDDSRAFKVGGG----SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGIN 495
              R RF    R+ +         R +    + + + VG +     R ++  +   SG+ 
Sbjct: 488 DERRPRFDRAERSERPERPERGQPRRDDADLTSYRIEVGHQHGVSPREIVGAIANESGLE 547

Query: 496 RQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGF 551
            + IG I ++ D + V++      +    L+R     + +++        D       G 
Sbjct: 548 GRYIGRIDIRDDHSVVDLPKGMPNEVFQHLKRVYVRGQALRITPA-----DESAGAGQGG 602

Query: 552 KSKNSQDGATKRFKRFKGASK 572
             +  +D +    +R     +
Sbjct: 603 AWEGRRDRSGPPRERDSRPPR 623


>gi|209809235|ref|YP_002264773.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010797|emb|CAQ81193.1| cold-shock DEAD box protein A (ATP-independent RNA helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 641

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 157/550 (28%), Positives = 254/550 (46%), Gaps = 31/550 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL E G+V  T +Q   +   L  +D L  AQTG+GKT AF L L + +  + 
Sbjct: 13  LEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAFSLPLLNKINLKQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HN------PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPETAQRILF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y +D  RV++A  N     +     +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLLETEEID 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           S+V    P  + + E         +  D  F+      +         + D   IAA  L
Sbjct: 367 SMVEIELPHRDQVAEARLAVLGAELAADKEFVALEAFSDLITKLQETLEVDASTIAAMLL 426

Query: 422 R-------------------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +                   + R+    PE           DR     R  +      +N
Sbjct: 427 KRQQGKRPLFYKGPDPMIAAVERSKNRRPERGDRGDRPERGDRPERGDRPDRGERRQYNN 486

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                 + L VG  Q  + + ++  L    G  + +IGAI++ P  T+V++       + 
Sbjct: 487 D-DFDTYQLEVGRDQGVQVKDIVGALANELGFTKGAIGAIKLAPGHTYVQLPKKMSSDVA 545

Query: 523 RTVKLDKGIQ 532
             +K  +  Q
Sbjct: 546 SKLKQLRIRQ 555


>gi|237796237|ref|YP_002863789.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
 gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 524

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 147/525 (28%), Positives = 257/525 (48%), Gaps = 32/525 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + + +A+   G+   +++QE  +   L   DV+  AQTG+GKT+AFG  + 
Sbjct: 4   KNFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +  +        AL + PTRELA+Q+  EL+ L   +   V    GG S+ R+ +
Sbjct: 64  SALCDKEKK----KGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           D+++G  IVVGTPGR+ DHI  + L +  +  ++LDEADEML++GF +DIE I++S+ ++
Sbjct: 120 DIKSGVDIVVGTPGRVLDHINRRTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++FSAT+   I  LA NY K  V       ++     I      V   D+  A+  I
Sbjct: 180 KQTMLFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVDKIAQNYFAVKNKDKLEALCRI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++AI+FC T+  V    + +    + V  + G++SQ +R N L+  +       
Sbjct: 240 IDSEEPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNFL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + E+ +HR GRTGRA ++G +  ++         +
Sbjct: 300 VATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIRQ 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKI 416
           + R     +  +  P++E I E+    +L D          EK   MV  L    D  ++
Sbjct: 360 IERITKSKIKKKELPTLEDILEKKYDNLLNDIASKIEENKYEKFMPMVKTLEQNFDLSQV 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +A  + +  +   + +                          ++   +      LSVG K
Sbjct: 420 SAALMEMLFSKEMSFDYTN-----------------------NKLEAEVPVRLFLSVGRK 456

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                + L+  +  ++ +    IG I +    TF++VS+   + +
Sbjct: 457 DSINVKSLLTFIQDAASVKNHEIGDIDILDKFTFMDVSSGTAEKI 501


>gi|215426565|ref|ZP_03424484.1| hypothetical protein MtubT9_09292 [Mycobacterium tuberculosis T92]
 gi|219557147|ref|ZP_03536223.1| hypothetical protein MtubT1_07530 [Mycobacterium tuberculosis T17]
 gi|260200303|ref|ZP_05767794.1| hypothetical protein MtubT4_09273 [Mycobacterium tuberculosis T46]
 gi|289442689|ref|ZP_06432433.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289569259|ref|ZP_06449486.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289749796|ref|ZP_06509174.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
 gi|289415608|gb|EFD12848.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T46]
 gi|289543013|gb|EFD46661.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T17]
 gi|289690383|gb|EFD57812.1| cold shock deaD-box protein A deaD [Mycobacterium tuberculosis T92]
          Length = 563

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 156/570 (27%), Positives = 266/570 (46%), Gaps = 29/570 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY + T++Q A +   +   DV+  AQTG+GKT AF + + S
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +         +  P AL + PTRELA+QV        A    +  +   GG S   +  
Sbjct: 74  KIDIT------SKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLA 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ DH+    L++S +  +VLDEADEML +GF DD+E IL  +P+ 
Sbjct: 128 GLRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  L+  Y  D   V   ++     +I    +   ++ + +A+  +L
Sbjct: 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYI--QVARKMDALTRVL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+ +     + L    F   A+SG++ Q +R   +  +RDG   + +
Sbjct: 246 EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +        + +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHD--PEK 415
            +    ++     P+VE +  +   +            G E  +++V     +HD     
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVKEYEREHDVPMAD 425

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA      R G        P      RD+ RD  +  K            + + ++VG 
Sbjct: 426 IAAALAVQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR-------PDLTTYRVAVGK 478

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           + K     ++  +    G++R   G IR+ PD + VE+ A      R T+K    +    
Sbjct: 479 RHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP---RATLKK---LAQTR 532

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           + G   D R Y+      +++  G  +R  
Sbjct: 533 ISGVLIDLRPYRPPDAARRHNG-GKPRRKH 561


>gi|329945603|ref|ZP_08293336.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528606|gb|EGF55571.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 852

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 158/620 (25%), Positives = 281/620 (45%), Gaps = 55/620 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +A+++ G+V+ T++Q+  +   L  +DV+  AQTG+GKT AFGL L  
Sbjct: 148 TFADLGLPSDLLKAVTDMGFVSPTAIQKEAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLD 207

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       S  S   AL +APTRELA+Q    +  + A++  +  V   GG     +  
Sbjct: 208 AVD------SRDSVVQALVLAPTRELALQSAEAITDMAARSRGLDVVAVYGGAPYGPQIG 261

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I +S P +
Sbjct: 262 ALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTE 321

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L
Sbjct: 322 RRTALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVL 381

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +
Sbjct: 382 AVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLV 441

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V  +    + +  ++
Sbjct: 442 ATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQI 501

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--------------PLFLDS-------IQG 398
            R     +     PS   + E  A+++L                PL   S       ++ 
Sbjct: 502 ERLTGSRLEEITLPSPADVSEHRARKLLSKAAARHERGRLDMYLPLVTSSARDLDIDVEE 561

Query: 399 DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV------SLVSGRDRFRDDSRA 452
               ++ + +    P +                E +         S   GR++ R   R 
Sbjct: 562 LAATLLALAVGDEGPRRREDRDRGERPHRARREENLDSEGTFLSASFEGGREKNRRGDRG 621

Query: 453 FKVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQ 505
            +  G       G R++    + + + VG + +     ++  L    GI    IG I + 
Sbjct: 622 DRGEGHRSAIRSGRREHEGPGTVYRVEVGHRDRVLPGAIVGALANEGGIEGSDIGKIDIL 681

Query: 506 PDLTFV----EVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK------- 554
              + V    ++S + + ++ R     + ++++   G    + G      + K       
Sbjct: 682 QSFSLVTIYADLSPEQLSVMGRATFAGRELRIRPDEGPGHGWSGPNGGERRPKRRDWDDR 741

Query: 555 -NSQDGATKRFKRFKGASKN 573
            +  +   +  + F+    +
Sbjct: 742 GDRSERGDRSDRGFRPRRDD 761


>gi|304315659|ref|YP_003850804.1| DEAD/DEAH box helicase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777161|gb|ADL67720.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 514

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 138/542 (25%), Positives = 257/542 (47%), Gaps = 39/542 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ + G+   + +Q  ++   L+  DV+  A+TG+GKT+A+G  + + + + 
Sbjct: 7   NLNEKILKAIDDMGFEEPSKIQSEVIPVLLQGSDVIGQAETGTGKTLAYGAPIINNIGSN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTRELA+QV  EL  +   + V +    GGV + R+ + ++ G 
Sbjct: 67  EGKV------FCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ D I+   L ++ +K +VLDEADEMLD+GF DDI+ I++ + K+R+ +MF
Sbjct: 121 DIIIGTPGRVLDLIKRDILRLNDVKYLVLDEADEMLDMGFIDDIKEIINHTNKERQTMMF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGA 244
           SAT+   I  LAK Y K   +     +                +      +  +      
Sbjct: 181 SATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC T+  V   T+ +    + V  + G++SQ +R N L+  ++G     +ATDVA
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGNLDFLVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+  L  + E+ +HR GRTGRA R G++  ++        +R+ RE  
Sbjct: 301 ARGIDIENLTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIERETK 360

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFLR 422
             +  +  P+++ I +    ++++D   +    G ++   +   L  +++   +AA  + 
Sbjct: 361 CKIRRKELPTIDDIFQVKYNKMIKDIKRVLENDGYKRFVPLAMELDEEYNLVDVAAALMD 420

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           ++        +  P                                  +++G K K   R
Sbjct: 421 MYYGKELYYNDDEPK----------------------------YVRLFINLGRKDKLNRR 452

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQLKYLGGEK 540
            L+ +L     I+++ IG I +    TF++ S +    +      K+  G ++K    + 
Sbjct: 453 TLLKLLMDIGDISKEDIGTIDIFDKFTFIDASRNAAKNIINNSFDKIIDGKRIKIEISKP 512

Query: 541 PD 542
            +
Sbjct: 513 KN 514


>gi|153955940|ref|YP_001396705.1| RNA helicase [Clostridium kluyveri DSM 555]
 gi|219856282|ref|YP_002473404.1| hypothetical protein CKR_2939 [Clostridium kluyveri NBRC 12016]
 gi|146348798|gb|EDK35334.1| Predicted RNA helicase [Clostridium kluyveri DSM 555]
 gi|219570006|dbj|BAH07990.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 524

 Score =  283 bits (724), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 143/538 (26%), Positives = 249/538 (46%), Gaps = 39/538 (7%)

Query: 1   MKIFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK       N+   + EA+   G+   + +Q   +   L   D++  AQTG+GKT+AFG 
Sbjct: 1   MKNISFNDLNLHPKVFEAIDNMGFEEPSQIQAESIPVILEGNDIIGQAQTGTGKTLAFGA 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + S +  +N   S      AL + PTRELA+QV  EL  +     +++    GG  + R
Sbjct: 61  PMLSKITPKNKHIS------ALILTPTRELAIQVNDELSRIAKFMKILLLPIYGGQPIER 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G +IVVGTPGR+ DH+  K L++S+++ + +DEADEMLD+GF +DIE I+ +S
Sbjct: 115 QIKSLKRGINIVVGTPGRILDHLHRKTLDLSNIEFLTIDEADEMLDMGFIEDIEEIIKAS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAI 235
              R+ L+FSAT+   +  LA  Y     +    ++N             +   DR  ++
Sbjct: 175 NPNRQTLLFSATMPDQVKRLASKYMSSNTKYITIAKNTLTVEKTKQYYYEIKHKDRFESL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL      +AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G  
Sbjct: 235 CRILDVDEPSSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGSL 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVAARGID+ ++  VI+ +L  + E+ +HR GRTGRA ++G++  ++       
Sbjct: 295 DFLVATDVAARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYIL 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE- 414
            +++ +     +  +  P+++ I E   + I +    +  I  +  K    +  + D E 
Sbjct: 355 LKQIEKFTKSKIKRKDIPTIDEIFEAKYKNIEEKIKKV--ISENNYKNFIPIATELDEEY 412

Query: 415 ---KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
               +AA  ++I                        D   +F     S      +     
Sbjct: 413 NLVDVAASLMKIIF----------------------DKELSFDYKENSIGIEDNNVRLFF 450

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           S+G       R L+  +  +S +    IG I +    TF+ V      ++ +     K
Sbjct: 451 SIGRMDNITPRKLIKFINETSSVEAYEIGDIDILNKFTFINVPERVASIILKKSNGKK 508


>gi|300856701|ref|YP_003781685.1| putative RNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436816|gb|ADK16583.1| predicted RNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 525

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 147/529 (27%), Positives = 251/529 (47%), Gaps = 35/529 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ + G+   + +Q   +   L   DV+  AQTG+GKT+AFG  + S +  +
Sbjct: 10  NLDPKVLQAIDDMGFEEPSQIQAESIPVILDGNDVIGQAQTGTGKTLAFGAPMLSKITTK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   S      AL + PTRELA+QV  EL  +     V +    GG  + R+ R L+ G 
Sbjct: 70  SKHIS------ALIVTPTRELAIQVNDELSRIAKFKKVALLPIYGGQPIDRQIRSLKRGM 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+ K L++S+++ ++LDEADEMLD+GF +DIE I+ ++   R+ L+F
Sbjct: 124 DVVVGTPGRILDHIKRKTLDLSNIEFLILDEADEMLDMGFIEDIENIIKATNSDRQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  L+  Y K  ++    ++N             +   DR  ++  IL     
Sbjct: 184 SATMPDQIKKLSSRYMKSNIKSIKIAKNTLTVDKTKQYYYEIKQKDRFESLCRILDVDEP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + L    + V  + G++ Q +R N L+  ++G     +ATDVA
Sbjct: 244 SSAIIFCKTKRGVDELVEGLQARGYNVEGMHGDMGQNQRLNTLRKFKEGSLEFLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+ +L  + E+ +HR GRTGRA ++G++  ++        +++ +   
Sbjct: 304 ARGIDVENVSHVINYDLPQDTESYVHRIGRTGRANKEGIAYSLVTPREYILLKQIEKFTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGF 420
             +  +  P+V+ I E   + I +    +  I  D  K    +  + D E     +AA  
Sbjct: 364 SKIRRKEIPTVDDIYEAKYKNIEEQVKSI--ISEDNYKNFIPIATELDEEYNLVDVAAAL 421

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           ++I                        D   +F     S    +      LS+G      
Sbjct: 422 MKIIF----------------------DKELSFDYKENSLTVDEKDVRLFLSIGRMDNLT 459

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            R L+  +  +S +    IG I +    TF+ V      ++ +     K
Sbjct: 460 PRKLLKFISETSSVEAYEIGDIDILNKFTFINVPERVSSIILKKTNGKK 508


>gi|193212281|ref|YP_001998234.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193085758|gb|ACF11034.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 647

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 154/607 (25%), Positives = 263/607 (43%), Gaps = 49/607 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL   GY   T +Q   +   L  +DVL  AQTG+GKT AF L   S +    
Sbjct: 24  LAEPLLQALEAVGYETPTPIQANTIPLLLEGRDVLGQAQTGTGKTAAFALPTLSNIDLS- 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S P  L +APTRELA+QV                +   GG     + R L+ G 
Sbjct: 83  -----LSDPQVLVLAPTRELAIQVAEAFHTYAEFMPDFHVLPIYGGQDYGVQIRMLKRGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+R   LN+  LK +VLDEADEML +GF DD+E+ILD +P+ R++ +F
Sbjct: 138 HVVVGTPGRVMDHMRKGTLNLDGLKCLVLDEADEMLRMGFIDDVEWILDQTPESRQVALF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ Y K    + I ++      I  R  +V    + +A+  IL      
Sbjct: 198 SATMPQPILRIARKYLKAPAEITIQAKTTTVETIRQRYWMVGGHHKLDALTRILEVEPFD 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+       + L    +   AL+G++ Q  R   ++ ++DG   + IATDVAA
Sbjct: 258 GIIIFVRTKTETVNLAEKLQARGYLAAALNGDMVQSARERTIEQLKDGTLNIVIATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++ ++ E+ +HR GRTGRAGR G ++  +    +     + R    
Sbjct: 318 RGLDVDRISHVINYDIPTDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLFAIERATRK 377

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG------ 419
            +     PS E + ++   +  Q     D+I  ++ +    ++ ++  E   +       
Sbjct: 378 RIDKMELPSTETVNDKRIAKFKQR--ITDTIAAEDLEFYVSMIGQYCQEHDVSELEAAAA 435

Query: 420 ----------FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------DSRAFKVGGGSRD 461
                     FL   +      E        + R+  RD        +    K   G   
Sbjct: 436 LAKLMQGDEPFLLSPKPERERRERRDEREQRNDREPRRDSFRDDDRHEREPKKQRKGGLY 495

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DG 517
           + +    + + VG     +   +   +    G++ +++G I +    + VE+ A    D 
Sbjct: 496 SDEKMETYRIEVGRMHDVKPGNIAGAIINEIGLDPEAVGRITINEQYSTVELPAGMPNDV 555

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKPDFRGY------------KSSGFKSKNSQDGATKRFK 565
              L++     + +++  +   +  +               +S G      +     R K
Sbjct: 556 FQELKKVRVCGRQLRVSKMDEHQGGYGDRQDRGFGGDRGGNRSFGKDRGGDRSFGGDRKK 615

Query: 566 RFKGASK 572
            F  +S 
Sbjct: 616 SFGKSSG 622


>gi|21226849|ref|NP_632771.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20905151|gb|AAM30443.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 587

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 167/570 (29%), Positives = 267/570 (46%), Gaps = 29/570 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +     +AL ++G+   T +QE ++   L+ + D++  AQTG+GKT AFG  +   +   
Sbjct: 12  LSDSTLKALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAFGAPIIEKI--- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +    A+ + PTRELA+QV  EL  +     + +    GG S+ ++ R L++G 
Sbjct: 69  ---PEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRVLKSGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+  K LN+ H+   VLDEADEML++GF DDI+ IL S+   +RML F
Sbjct: 126 DIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNKRMLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + K + ++   + I  E    +  +     V  SD+  A+  I+      
Sbjct: 186 SATMPKAILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIIDIEDEF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+   S+  + L++  +   AL G+LSQQER   L   R  +  +  ATDVAA
Sbjct: 246 YGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +  
Sbjct: 306 RGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKS 365

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P ++ + +    R+   L++ +  +   GD  +M   LL ++  EKI A  L+
Sbjct: 366 EMKKGHIPEIKDVIKAKRARVRTELEETIKTEEY-GDCLEMSQKLLEEYPAEKILAALLK 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                               +D+F +        G S  + KG S   +++G        
Sbjct: 425 FTF-----------------KDKFDESMYTEISSGSSYVDRKGKSRLFIAMGKADGMTPD 467

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            L   +    G     +    + P  +FV +     + L    K +K    K        
Sbjct: 468 KLSYFIQEELGDGELKVRDAEIFPHFSFVTLPFAQAETLIEIFK-NKRRGSKPFVELAQK 526

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            RG  S       S +  T R     G S+
Sbjct: 527 SRGRSSKDSGETRSDNRGTSRGNSRNGESR 556


>gi|85712866|ref|ZP_01043908.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85693330|gb|EAQ31286.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 587

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 168/584 (28%), Positives = 270/584 (46%), Gaps = 28/584 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +P V+   L   G+   T +Q+  +   L   DVL  AQTG+GKT AF L   +
Sbjct: 9   SFQDMALPSVVLNQLEALGFTQPTPIQQQAIPSLLEGNDVLGEAQTGTGKTAAFSLPALA 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERR 119
           ++ A             L + PTRELA+QV   +E    +  G+ VA   GG +   + +
Sbjct: 69  SIEANQ------RQTQMLVVTPTRELAIQVADAIESFSKQMKGMEVATVYGGSAFGPQIQ 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D +  K L +  L+  VLDEADEML++GF +DIE IL S P  
Sbjct: 123 ALKRGASVVVGTPGRLIDLLNKKVLKLDGLRFAVLDEADEMLNMGFIEDIETILQSVPDT 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT+  AI  LAK Y  D V + IA   +  ++I  RA  V    +  A+  +L
Sbjct: 183 AQRALFSATMPTAIRKLAKTYLTDPVNIRIAPVEQAKANIRQRAWKVMGMTKMTALTRLL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF  TR       ++L    F+   LSG+L+Q +R   +  +R G  +V +
Sbjct: 243 EVTEYQRALVFVRTRQDTMDVAELLQRQGFRAAPLSGDLNQAQREQTVTQLRSGHIKVLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARG+D+P++  VI+ +L S+ E+ +HR GRTGRAGR G ++       +      
Sbjct: 303 ATDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRSGEAILFYRGKERHLLRHY 362

Query: 360 FREANVSVVWEPAPSVEAIR--ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDPEK 415
            +  N S+ +   PS E +    ++  +          +  + +K++   LA      E+
Sbjct: 363 EKLTNGSIEYFDVPSAEELSRFRQEQLQQSLLKQLESDVDSNVQKLLSSWLADGSMTAEQ 422

Query: 416 IAAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-----SRDNFKGSSWF 469
           IA   L + ++      +E             RD+ R  +          R        +
Sbjct: 423 IALSLLAQRNQQQPLFVKEERRPRPERAERADRDNGRPQRGEKRVRATTKRVPDSEFDTY 482

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            + VG    A    ++  +   + I+ Q IG I++    + V++     A+    L+RT 
Sbjct: 483 KIQVGRDHGARPGDIVGAIANEAEIDSQFIGQIQLFAQHSLVQLPKGMPAELKKALQRTR 542

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSG---FKSKNSQDG--ATKRF 564
              + + L+             S G    + +  + G  A +RF
Sbjct: 543 VRQQPMALELSDSPLKKMPPRASKGNGDNRRRAPRKGQPAARRF 586


>gi|229820496|ref|YP_002882022.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229566409|gb|ACQ80260.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 589

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 156/575 (27%), Positives = 270/575 (46%), Gaps = 19/575 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++  PQ + +A++  G+   T +Q A +   L  +D++  AQTG+GKT AFGL L +
Sbjct: 21  SFDDLGLPQALLDAVTGLGFTTPTPIQTAAIPALLSGRDLVGVAQTGTGKTAAFGLPLLA 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +  +       +A  AL + PTRELA+QV      ++ +  GV V    GG S   + R
Sbjct: 81  AVDPQ------LAAVQALVLTPTRELAIQVSDAVASFVPSGAGVKVLPIYGGASFVPQLR 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ D +    L++  L+ +VLDEADEML +GF +D++ IL  +P  
Sbjct: 135 GLERGAQVVVGTPGRVIDLLERGSLDLDALRYLVLDEADEMLRMGFAEDVDVILAKTPAT 194

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ P I  +A+ + ++   + +A +    + +     +V   ++  A+  +L
Sbjct: 195 KQVALFSATMPPPIRKVAETHLRNPEEIAVARQATPIAAVTQTYAIVPYRNKAEALSRVL 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A  AIVF  TR +       LA       ++SG+++Q+ER   ++ +R G   V +
Sbjct: 255 ATSDADAAIVFVRTRETAEEVGTALASRGINAASISGDVAQRERERIVERLRSGALDVLV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR G ++  +    + R   +
Sbjct: 315 ATDVAARGLDVERIGLVVNFDVPREVETYVHRIGRTGRAGRTGNALTFLTPKEKPRLRTI 374

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLA-KHDPEK 415
            R     +V    P+   +        L      L    +    +++V  +     DP  
Sbjct: 375 ERVTGSRLVEATIPTNAEVAAHRTGAALATAHARLGAGDVSAHRERLVAHVAELGVDPLD 434

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +AA  L +      AP            DR R          G R        + ++VG 
Sbjct: 435 VAAALLALAVGDDGAPAGDDLALPAHDGDRQRGFDGDRGRERGGRRGGGDGEKYRIAVGH 494

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLDKGI 531
           +     + ++  +    G+    IG I + P  + VE+      D    +       + +
Sbjct: 495 RDGVSPQAIVGAITGEGGLRGADIGKIDIFPSFSLVEIPGGVSPDVARRIGAAKVAGRPL 554

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
           +++   G  P  RG++S G +        ++R  R
Sbjct: 555 RIRLDDG--PPNRGHRSGGGQRDARGPRDSRRPSR 587


>gi|332296357|ref|YP_004438280.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
 gi|332179460|gb|AEE15149.1| DEAD/DEAH box helicase domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 531

 Score =  283 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 140/523 (26%), Positives = 251/523 (47%), Gaps = 29/523 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + +    AL E G+   + +Q+  +   ++  DV+  AQTG+GKT AFG+ +       
Sbjct: 11  ELSKDTVLALKEMGFEEPSEIQKQTIPIVMQGFDVIGQAQTGTGKTAAFGIPIVE----- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +    P +L + PTRELA+QV  E+  +    G+ V    GG S+ R+ + L+NGA
Sbjct: 66  --KTTKDRVPQSLVLTPTRELAIQVAEEISKISKYRGLRVVPIYGGQSIERQIKALKNGA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++GTPGRL DHI+   L +S +  +VLDEADEMLD+GF +DIE I+ S   +    + 
Sbjct: 124 QVIIGTPGRLIDHIKRGTLFLSKISILVLDEADEMLDMGFIEDIETIMKSIKNENIQTLL 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            +   P              +V   S+ +    +          D+  A+  IL      
Sbjct: 184 FSATMPDPIMALTKKYMKNPKVVSISKEQLTVPLT-DQFYCEAKDKLEALCRILETEDMD 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+  V      L    +    L G+L+Q +R   ++  R+    V +ATDVAA
Sbjct: 243 KTIIFCRTKKGVDELVASLNTRGYSAEGLHGDLTQAQRDKVMKSFRERNLEVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  VI+ ++  +PE+ +HR GRTGRAG+ G+++  I     R+   + +    
Sbjct: 303 RGLDISDVSHVINFDIPQDPESYVHRIGRTGRAGKSGIAITFITPREFRQLRLIEKVIRT 362

Query: 366 SVVWEPAPSVEAIRER---DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           ++  +  PS+  + E+   + + ++   +  ++I      +V+ +  + +PEKIAA  +R
Sbjct: 363 TIKRKEVPSISDLLEKQKDELKNLISKIIRQENI-SHYLSIVEEMTEEFEPEKIAAAAIR 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +++ G   PEE   V                K         +G +   +++G ++     
Sbjct: 422 LYQEGE--PEEKLEVD---------------KEKFKKTGAKEGMTRLFINIGKEKNISKD 464

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            ++  +C    + ++ I  IR+    TF+EV  +  + +   +
Sbjct: 465 DIVNYICEEGDMKKKDIKNIRILDKFTFLEVPEEASERIIAVL 507


>gi|224023569|ref|ZP_03641935.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
 gi|224016791|gb|EEF74803.1| hypothetical protein BACCOPRO_00272 [Bacteroides coprophilus DSM
           18228]
          Length = 637

 Score =  283 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 171/590 (28%), Positives = 274/590 (46%), Gaps = 30/590 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +            P AL + PTREL +Q+  +L       T + +    GG S+  
Sbjct: 61  LIQKIDVSR------RVPQALILCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G HI+V TPGRL D +  K   +  +  VV+DEADEML++GF D I  IL+  
Sbjct: 115 QIKSLKAGVHIIVATPGRLIDLMERKVARLDTVADVVMDEADEMLNMGFTDSINAILEKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  LMFSAT+SP I  +AK Y  DA  + I ++N    ++ + A  V   D+  A+ 
Sbjct: 175 PEERNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVHHIAYTVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RVVDFYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQCHLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDTESYTHRSGRTGRAGKTGVSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAK 410
             + R           P+ + I E+   +++ D   ++ ++ DE+++      +   L  
Sbjct: 355 REIERIIKKKFDLGTLPTGKEICEQQLIKLIDD---IEKVKVDEEEIETFLPGIYRKLEW 411

Query: 411 HDPEKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              E +     +  F R       A E   P        +             SR   KG
Sbjct: 412 LSKEDLIKRVVSMEFNRFLDYYKNAAEIEQPKGNEKRESQKERKDHGSDREKISRKAEKG 471

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   L++G      A  ++ ++ R+    R  IG I +  + +F E++     ++ + +
Sbjct: 472 YTRLFLNLGKTDGFYANQIIELINRNLKKERIEIGRIDLMQNFSFFEIAEAQAPMVIKAL 531

Query: 526 KLDKG------IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
                      +++      K D  G K     +K ++    K  K  KG
Sbjct: 532 NKTTANGRRVIVEVAGENNGKSDKSGKKQKNATAKPAEKKGKKGSKADKG 581


>gi|107102390|ref|ZP_01366308.1| hypothetical protein PaerPA_01003452 [Pseudomonas aeruginosa PACS2]
 gi|296388673|ref|ZP_06878148.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 556

 Score =  283 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 145/546 (26%), Positives = 260/546 (47%), Gaps = 23/546 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A+   GY   + +Q   +   L   D++  AQTG+GKT AF L L S +    
Sbjct: 13  IHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSRIDPSR 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGA 125
                   P  L + PTRELA+QV    E    +   V  V + G   +  + + L+ GA
Sbjct: 73  ------REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRLCDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + K    V IA++ +  + I+   ++V    +  +I  +L      
Sbjct: 187 SATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVAA
Sbjct: 247 ALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V++ ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R    
Sbjct: 307 RGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQG--------DEKKMVDVLLAKHDPEK 415
            V     P  E + E    R+     PL   +++           +   D          
Sbjct: 367 KVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETLAAALLA 426

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG--GGSRDNFKGSSWFSLSV 473
                  +    +   + +TP +     DR     R  + G         +G +    ++
Sbjct: 427 RLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRARCRTAL 486

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDK 529
           G++    A+ L+  +    G++R+ IG I+++   + +E+    ++ L      T    K
Sbjct: 487 GARDGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGK 546

Query: 530 GIQLKY 535
            ++L+ 
Sbjct: 547 ALRLRR 552


>gi|163800381|ref|ZP_02194282.1| hypothetical protein 1103602000595_AND4_06859 [Vibrio sp. AND4]
 gi|159175824|gb|EDP60618.1| hypothetical protein AND4_06859 [Vibrio sp. AND4]
          Length = 619

 Score =  283 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 164/560 (29%), Positives = 274/560 (48%), Gaps = 28/560 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L L + L  +
Sbjct: 12  SLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAFSLPLLNKLDLD 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QRK------PQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ D I  + L++  +K  VLDEADEML++GF DD+  I++ SP   + ++
Sbjct: 126 AHVIVGTPGRVQDLINRERLHLDEVKTFVLDEADEMLNMGFVDDVTAIMEHSPDSAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P + ++ + + +  V V++A +N     +  +  +V   ++D A+  +L     
Sbjct: 186 FSATMPPMLKSICERFLRSPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEET 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 246 DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKKGVIDILVATDVV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R   
Sbjct: 306 ARGLDVPRINHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTK 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAG 419
            S+     P  + + E    ++  + L  +       K VD++       + +P  +AA 
Sbjct: 366 SSMEEIQLPLRDQVAEARLNKLAAE-LEAEKEHKALDKFVDLVEKLQTSLEIEPATLAAM 424

Query: 420 FLRIHRAGLC------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            L+  +           P           R   R+  R     GG   N +    + L V
Sbjct: 425 LLKRQQGKRPLFYVGEDPMVEAIERDKQRRKDRREGGREGGREGGRSYNNQDWDTYQLQV 484

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDK 529
           G +Q  + + ++  L    G+ + SIGAI++    TFV++      D  + L +      
Sbjct: 485 GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLR---- 540

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
            I+ K +G    DF  ++ S
Sbjct: 541 -IRQKDVGAVVCDFDDFRES 559


>gi|27366603|ref|NP_762130.1| cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37676317|ref|NP_936713.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158491|ref|YP_004190869.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
 gi|27358169|gb|AAO07120.1| Cold-shock DEAD-box protein A [Vibrio vulnificus CMCP6]
 gi|37200858|dbj|BAC96683.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933803|gb|ADV88666.1| cold-shock DEAD-box protein A [Vibrio vulnificus MO6-24/O]
          Length = 641

 Score =  283 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 158/565 (27%), Positives = 273/565 (48%), Gaps = 21/565 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I  AL   G+V+ T +Q A +   L+  D L  AQTG+GKT AF L L + L   
Sbjct: 12  ELNDAILSALDGMGFVSPTPIQAAAIPHLLQGVDALGKAQTGTGKTAAFSLPLLNKLDLA 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QRK------PQAIVLAPTRELAIQVAAEMKNLGQNIRGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P   + ++
Sbjct: 126 AHVIVGTPGRVQDLINRERLDLGEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  + + + +D V V++A +N     +  +  +V   ++D A+  +L     
Sbjct: 186 FSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVAQQFWVVKGVEKDEAMSRLLETEET 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 246 DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G ++ ++  N  R    + R   
Sbjct: 306 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRQGKAILLVRTNQIRMLRTIERVTK 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKH---DPEKIAAGF 420
            S+     P  + +      ++  +    ++    D+   +   L +    D   +AA  
Sbjct: 366 SSMEEIQLPLRDKVAAARLDKLAAELQADIEHKALDKFAELIEKLEERLEIDSSVLAAIL 425

Query: 421 LRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGS 475
           L+     R      E+    ++   +   R+       GG          W  + L VG 
Sbjct: 426 LKRQQGKRPLFYIGEDPMIEAIERDKQNRRERRENRDNGGRRESFNSNQDWDTYQLQVGR 485

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           +Q  + + ++  L    G+ + SIGAI++  + TFV++           ++  + I+ K 
Sbjct: 486 EQGVQVKDIVGALANELGLGKGSIGAIKLAQEHTFVQLPKAMSTQAASKLRKLR-IRQKE 544

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDGA 560
           +G    DF  +  +    +  +DGA
Sbjct: 545 VGAVVCDFNDFNEN----RGRRDGA 565


>gi|258653503|ref|YP_003202659.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258556728|gb|ACV79670.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 607

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 149/581 (25%), Positives = 266/581 (45%), Gaps = 23/581 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+ + G+   T++Q A +   L  +D+   AQTG+GKT AFGL L + +    
Sbjct: 34  LPGTLLRAVKDLGFATPTAIQAAAIPALLAGRDITGVAQTGTGKTAAFGLPLLAAID--- 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125
               P     AL + PTRELAVQV   +         V  + I G +    +R   + GA
Sbjct: 91  ----PTPGVQALVLCPTRELAVQVADAISSFATALPDVSVIAIYGGTGFLPQRAALRAGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L++S L+ +VLDEADEML +GF +D++ IL  +P  R+  +F
Sbjct: 147 QVVVGTPGRIIDHLERGTLDLSGLRFLVLDEADEMLRMGFAEDVDRILSDAPNSRQAALF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI ++A  +  + V + ++ ++     +     +V   D+ +A+   L+     
Sbjct: 207 SATMPPAIRSIAAKHMTNPVDIAVSRQSSTVDSVRQIYAVVPFRDKVDALTRFLQVTEGD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+ +  +    L         ++G++ Q+ER   ++ +RDGR  V +ATDVAA
Sbjct: 267 AAIVFVRTKEACDQVGTDLLARGVSAAVMNGDVPQKEREKIIERLRDGRLDVLVATDVAA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +    PE  +HR GRTGRAGR G ++         R   + R    
Sbjct: 327 RGLDVDRIDLVVNFDAPGEPEAYVHRIGRTGRAGRTGTALTFFTPREMGRLRAIERATRG 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIAAGFLRI 423
           ++     PS + +    A  +L+  L    +   G + +++  LLA+ +          +
Sbjct: 387 TLEQIVPPSPDEVTAHKAAMVLRKALTRLDVGRLGRQNRLIRDLLAESEITAEELAAALL 446

Query: 424 HRAGLCAPEEITPVSLVS--GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
             A      E TP    +   +DR      A     G          + ++VG +     
Sbjct: 447 ALAAGDDGVERTPAVEPASFEKDRKTKVRSAAGDRPGRAARPPFGRRYRVAVGHRDGVRP 506

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLG 537
             ++  +    G++ + +G I +    + VE++A+     +  +       + ++++   
Sbjct: 507 AGIVGAIAGEGGVSGKDLGRIEIFDTFSTVEIAAELSPAALGRIANAKVSGRTLRIEPDR 566

Query: 538 GEKPDFRGYKSSGFKSKNSQDG-------ATKRFKRFKGAS 571
            +    R +          +DG         +  +  +G  
Sbjct: 567 EDAAGRRPWAGQRDSHGPRRDGQGFEHGHDHRPVRAGRGGR 607


>gi|86133373|ref|ZP_01051955.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820236|gb|EAQ41383.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 606

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 163/594 (27%), Positives = 282/594 (47%), Gaps = 38/594 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           M  F+   +   I +AL++ GY   T +QE  +   +  + D+   AQTG+GKT AF L 
Sbjct: 1   MSTFKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           +   L  +N+         A+ ++PTRELAVQ+G  ++        V V    GG S+  
Sbjct: 61  ILELLEEDNNNV------QAIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMED 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G+ IVVGTPGR  D I  + L + +++ +VLDEADEML++GF+++++ +L+++
Sbjct: 115 QIRSLKKGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEAT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ ++ L+FSAT    +  +A+NY    V V    +N    ++ +    V    R  A+ 
Sbjct: 175 PETKQTLLFSATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAVTERTRYPALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I   +    AI+FC TR         L +  +   +L G+LSQ +R + +   R    +
Sbjct: 235 RIADLNPDIYAIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ +L  VI+ +L    EN  HRSGRTGRAG KG+S+ ++    + + 
Sbjct: 295 ILVATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---HDP 413
             + R      V    P+ + I E     ++         + + K+ +  +  K    D 
Sbjct: 355 RVIERIIKQKFVEGKVPTGKEIVENQLMNLIDKVNDTKVNESEIKEFLPSIYDKLKDLDR 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E++   F+ +    + A  E +      GR+  R  + A              + F +++
Sbjct: 415 EELIQKFVSLEFNTMLAYYENSKDLNDLGRENSRARATAD-----------NMTRFFINI 463

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLR------- 522
           G K       L+ ++   +  ++  IGAI +    +F E+      + +D          
Sbjct: 464 GRKDSLNPAKLIGLINDQNIGDKIEIGAIDILDTFSFFEIDKNFESETLDAFASNQPDFD 523

Query: 523 -RTVKLDKGIQLKYLGGE--KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            R+V ++   + +  GG   K    G K  GF  + S +G++ R     G  +N
Sbjct: 524 GRSVNVEITKKERSGGGRRGKKKSFGKKDGGFGRRRSAEGSSSRRSSDNGGGRN 577


>gi|15598036|ref|NP_251530.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|116050844|ref|YP_790333.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890962|ref|YP_002439828.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|254235828|ref|ZP_04929151.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|254241507|ref|ZP_04934829.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|9948926|gb|AAG06228.1|AE004710_10 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|115586065|gb|ABJ12080.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167759|gb|EAZ53270.1| hypothetical protein PACG_01770 [Pseudomonas aeruginosa C3719]
 gi|126194885|gb|EAZ58948.1| hypothetical protein PA2G_02205 [Pseudomonas aeruginosa 2192]
 gi|218771187|emb|CAW26952.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 567

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 145/546 (26%), Positives = 260/546 (47%), Gaps = 23/546 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A+   GY   + +Q   +   L   D++  AQTG+GKT AF L L S +    
Sbjct: 24  IHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFALPLLSRIDPSR 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGA 125
                   P  L + PTRELA+QV    E    +   V  V + G   +  + + L+ GA
Sbjct: 84  ------REPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGA 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRLCDH+R     ++ ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 138 QILVATPGRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + K    V IA++ +  + I+   ++V    +  +I  +L      
Sbjct: 198 SATLPASIRGIAERHLKQPKHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFD 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +   + ++L    ++  AL+G++ Q +R   ++ ++DG   + IATDVAA
Sbjct: 258 ALIAFVRTKQATLDYAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVIATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V++ ++  +PE+ +HR GRTGRAGR+G ++ ++    +R  + + R    
Sbjct: 318 RGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQ 377

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQG--------DEKKMVDVLLAKHDPEK 415
            V     P  E + E    R+     PL   +++           +   D          
Sbjct: 378 KVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETLAAALLA 437

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG--GGSRDNFKGSSWFSLSV 473
                  +    +   + +TP +     DR     R  + G         +G +    ++
Sbjct: 438 RLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRARCRTAL 497

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RTVKLDK 529
           G++    A+ L+  +    G++R+ IG I+++   + +E+    ++ L      T    K
Sbjct: 498 GARDGVAAKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGK 557

Query: 530 GIQLKY 535
            ++L+ 
Sbjct: 558 ALRLRR 563


>gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
           denticola F0402]
          Length = 570

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 161/576 (27%), Positives = 266/576 (46%), Gaps = 29/576 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  ++ +A+  +G+   T +Q   +   L  + +V+  A+TG+GKT AFGL L   L + 
Sbjct: 10  LDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL + PTRELAVQV  ELE    +    +A   GG ++  + R L+ G 
Sbjct: 70  TGKV------RALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+    L I  ++  +LDEADEML++GF +DIE I   +  + R+LMF
Sbjct: 124 EIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I ++A ++  D   V    +  + S  +    +V   D+  A+V ++      
Sbjct: 184 SATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNF 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+       K L E  ++  AL G++ Q +R   L+  R  + R+ +ATDVAA
Sbjct: 244 YGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V++  +  +     HR GRTGRAG  G++V  +  N  +R E L + A  
Sbjct: 304 RGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARG 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAKH-DPEKIAA 418
            +     PS+E + E    RIL++       +  E+K           L ++ D + + +
Sbjct: 364 ELKEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLS 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             L++      +P     +  V    R R              + + S    + VG K  
Sbjct: 424 FILQMQYGSFLSPAHYKTIKPVRSEGRAR-------------KSDEDSLRLYIGVGRKDG 470

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG- 537
              R L  ML R   I  + +  I V    +   +  +  +   R  K  +G+   ++  
Sbjct: 471 ITKRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDV 530

Query: 538 -GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             E P   G    G + +  ++G  ++ +    ASK
Sbjct: 531 KSEAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566


>gi|90413445|ref|ZP_01221437.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90325533|gb|EAS42010.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 626

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 161/599 (26%), Positives = 279/599 (46%), Gaps = 38/599 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L + + +   
Sbjct: 12  DLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P   + ++
Sbjct: 126 AHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHG 243
           FSAT+ P +  +   + +   R+++A ENR  S +  +  +V   ++D A++ +      
Sbjct: 186 FSATMPPIVKQIVDRFLRSPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEEN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +IVF  TR    R    L+    +  AL G++ Q  R   +  ++ G   V +ATDV
Sbjct: 246 IDASIVFVRTRQDTERLADWLSSRGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R  
Sbjct: 306 VARGLDVQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-----VLLAKHDPEKIAA 418
              +     P+ +A+      R+ Q+ L     Q   +  V+           D   +AA
Sbjct: 366 KSRMEEIQLPNRDAVAAARLTRLGQE-LESQKEQATLEAFVELVGKLQETINVDAPTLAA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             L+  +       +     + +          R      SR  + G    +N      +
Sbjct: 425 MLLQRQQGNRPLFYKGPDPMIAAIEREQQRRERRGNDDRGSRNERGGERRSNNSADWDTY 484

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTV 525
            L VG +Q  + + ++  +    G++++ IGAI++ P  TFV++     A+    L++  
Sbjct: 485 QLQVGREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQLPKKMSAEVSAQLKKLR 544

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSK-----------NSQDGATKRFKRFKGASKN 573
                ++   + GE       ++SG +             N  +G  +RF R +G+   
Sbjct: 545 IRQNDVKAVVVEGEVLREHRPRNSGNRDGGRGGYRGNRDSNGGNGGERRFDRNRGSDNR 603


>gi|329890702|ref|ZP_08269045.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568]
 gi|328846003|gb|EGF95567.1| cold-shock DEAD box protein A [Brevundimonas diminuta ATCC 11568]
          Length = 668

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 263/582 (45%), Positives = 359/582 (61%), Gaps = 16/582 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREK---DVLVSAQTGSGKTVAFGLALAS 60
           F  I   +  AL  +GY   T VQ A+    L      D+LVSAQTGSGKTVAFGLA A 
Sbjct: 3   FPAIHPALDRALLNKGYAEPTPVQAAV----LEGHGEADLLVSAQTGSGKTVAFGLAAAP 58

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL E++RF     PL LAIAPTRELA+QV  ELEWLYA+ G  +  C+GG+   +E R 
Sbjct: 59  TLLGEDERFGQPDTPLMLAIAPTRELALQVAAELEWLYAEAGAKIVTCVGGMDARKEARA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAH+VVGTPGRL DHI    L++S  + VVLDEADEMLD+GFR+D+E+ILD +P++R
Sbjct: 119 LNYGAHVVVGTPGRLKDHIDRGALDLSAARVVVLDEADEMLDMGFREDLEYILDQAPEER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+FSATI+  I  +AK YQKDAVR++    ++ H+DI+YRA+ +A ++ + A+VN+LR
Sbjct: 179 RTLLFSATIARDIAIMAKRYQKDAVRIDTVDRSQPHNDIEYRALRIAPNEIERAVVNVLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y  A   +VFCSTR SV      L E  F  VALSGE+ Q+ER+ ALQ +RD RARVC+A
Sbjct: 239 YFEAPGVLVFCSTRDSVRHLQASLVERGFASVALSGEMGQRERNEALQALRDRRARVCVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+DLPDL LVIHAEL  N   +LHRSGRTGRAG+KG+SV ++P + +R+AE L 
Sbjct: 299 TDVAARGLDLPDLGLVIHAELPINKATMLHRSGRTGRAGKKGISVLLVPHSRRRKAEMLL 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A V  VW  AP+ + IR +D QR+L  P+F +    ++  +V+ L+ +  P+ +A   
Sbjct: 359 GSAGVEAVWSGAPTADEIRAQDEQRLLAAPVFAEEGADEDAGLVEKLVKERTPDDLARAL 418

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD------DSRAFKVGGGSRDNFKGSSWFSLSVG 474
           L + R  L APE++T       R   +D      D+ A     G R      SWF L +G
Sbjct: 419 LVLLRKNLPAPEDLTDPGEGPQRKPRKDRDAAGGDAYAPAPWPGDRLQPDEVSWFRLDIG 478

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLRRTVKLDKGIQL 533
             + A+ +WL+P++CR  GI +Q IG+IR  P+ T  EV+            +  +  ++
Sbjct: 479 RNRNADPKWLIPLICRIGGITKQQIGSIRTFPEETRFEVALTHADAFRAAAAQSKEEARI 538

Query: 534 KYLGGEKPD-FRGYKSSGF-KSKNSQDGATKRFKRFKGASKN 573
                  P   +G ++  F +   ++  A K F+R +     
Sbjct: 539 TPSEAPTPGSMKGARNRNFERDGEARPYAKKPFRRDEDGQGR 580


>gi|90577457|ref|ZP_01233268.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440543|gb|EAS65723.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 654

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 162/598 (27%), Positives = 281/598 (46%), Gaps = 40/598 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL   G+V  T +Q A +   L   D L  AQTG+GKT AF L + + +   
Sbjct: 38  DLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLNKVDLS 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 98  QHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I  K L +  +   VLDEADEML +GF DD+ +I++ +P+  + ++
Sbjct: 152 AHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +   + ++  R+++A ENR  S ++ +  +V   ++D A+  +L     
Sbjct: 212 FSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDT 271

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 272 DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVV 331

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R   
Sbjct: 332 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 391

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGF 420
             +     P  + +      R+ ++          E   ++V+ L      D   +AA  
Sbjct: 392 SRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAATLAAML 451

Query: 421 LRIHRAGLCAPEEITPVSLVS-------------GRDRFRDDSRAFKVGGGSRDNFKGSS 467
           L+  +       +     + +              RDR     R  + G     N     
Sbjct: 452 LQRQQGNRPLFYKGPDPMIAAIERESQRRERRGNDRDRGDRRERGGERGERRSYNNADWD 511

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRR 523
            + L VG +Q  + + ++  +    G++++ IGAI++ P  TFV++     A+    L++
Sbjct: 512 TYQLQVGREQGVQVKDIVGAIANELGLSKEFIGAIKLAPTHTFVQLPKKMTAEVAAQLKK 571

Query: 524 TVKLDKGIQLKYLGGE-------KPDFRGYKSSGFKS-----KNSQDGATKRFKRFKG 569
                  ++   + GE       +   R     G++      ++   G  +RF R +G
Sbjct: 572 LRIRQNDVKAVVVEGEVLREHRPRSGNRDGNRGGYRGNRDGNRDGNRGGERRFDRNRG 629


>gi|307545782|ref|YP_003898261.1| ATP-dependent RNA helicase DeaD [Halomonas elongata DSM 2581]
 gi|307217806|emb|CBV43076.1| K05592 ATP-dependent RNA helicase DeaD [Halomonas elongata DSM
           2581]
          Length = 555

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 156/540 (28%), Positives = 249/540 (46%), Gaps = 21/540 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   GY   + +Q   +   L  +D+L  AQTG+GKT AF L + S L  + 
Sbjct: 16  LLPAVLSAVETLGYETPSPIQAQTIPALLEGRDMLGQAQTGTGKTAAFALPILSRLELDR 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA QV            G+ VA+  GG+    + + L+ GA
Sbjct: 76  ------REPQVLVLAPTRELAQQVAASFSKYGQNLKGLEVAILCGGMEYRDQMQALRRGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH+    L +  L A+VLDEADEML +GF DD++ ++  +P   + + F
Sbjct: 130 QVVVGTPGRIIDHLDRGSLKLGGLSALVLDEADEMLRMGFIDDVKRVVADTPVDAQRVFF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   Y  + V+V I S      +I+ R V +    +  A+  IL      
Sbjct: 190 SATLPTEIERIVNQYLVEPVKVTIESRASSGDNIEQRRVRIDGGAKLEALARILEVEPVD 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  TRA+ +   + L+     V +LSG+L Q  R   +  ++ G+  V IATDVAA
Sbjct: 250 AAIVFVRTRAACTTLMEQLSARGLNVASLSGDLDQSLRERTITRLKRGKIDVLIATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  VI+ +L  + E   HR GRTGRAGR G+++        R+   L R    
Sbjct: 310 RGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRAGVAITFAGNREGRKVGWLERATGR 369

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRI 423
            +     P   AIR    +   Q  +   +   D ++ +   L +  +DP +        
Sbjct: 370 KMDDMELPDEAAIRAHRDEIFQQRVIGSLTKDADSQRDLVERLVEEGYDPIE----LACA 425

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
             A   A E          ++R   +S+  +  G S    +G + + ++VG K   +   
Sbjct: 426 FAALARADEAPIGRLQAPRKERAPRESKPRRERGPS----EGMTRYRVAVGHKDGIKPGQ 481

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGIQLKYLGGE 539
           L+  L    GI    IG I ++   + VE    + +  +  + R     + +++      
Sbjct: 482 LVGALANEGGIEGNRIGRIDIRNAFSVVELPSGLPSSILTKMARARVGGRPLEISEDRAP 541


>gi|54302107|ref|YP_132100.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915528|emb|CAG22300.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 623

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 158/596 (26%), Positives = 279/596 (46%), Gaps = 35/596 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL   G+V+ T +Q A +   L   D L  AQTG+GKT AF L + + +   
Sbjct: 12  DLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVDLS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P   + ++
Sbjct: 126 AHIVVGTPGRVKDLISRDRLHLDEVSTFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHG 243
           FSAT+ P +  +   + ++  R+++A ENR  S +  +  +V   ++D A++ +      
Sbjct: 186 FSATMPPIVKQIVDRFLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEEN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +IVF  TR    R    L+    +  AL G++ Q  R   +  ++ G   V +ATDV
Sbjct: 246 IDASIVFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARG+D+  +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R  
Sbjct: 306 VARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLVRTNQIRMLRTIERVT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-----VLLAKHDPEKIAA 418
              +     P+ +A+      R+ Q+ L     Q   +  V+           D   +AA
Sbjct: 366 KSRMEEIQLPNRDAVAAARLTRLGQE-LESQKEQATLEAFVELVGKLQETIDVDATTLAA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVS---------GRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             L+  +       +     + +          R      +R  + G    +N      +
Sbjct: 425 MLLQRQQGNRPLFYKGPDPMIAAIDREQQRRERRGNDDRGTRNERGGERRSNNSADWDTY 484

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTV 525
            L VG +Q  + + ++  +    G++++ IGAI++ P  TFV++     A+    L++  
Sbjct: 485 QLQVGREQGIQVKDIVGAIANELGLSKEFIGAIKLAPSHTFVQLPKKMSAEVSAQLKKLR 544

Query: 526 KLDKGIQLKYLGGEKPDFRGYKS--------SGFKSKNSQDGATKRFKRFKGASKN 573
                ++   + GE       ++         G++     +G  +RF R +G+   
Sbjct: 545 IRQNDVKAVVVEGEVLREHRPRNSGSRDGGRGGYRGNRDSNGGERRFDRNRGSDNR 600


>gi|189460629|ref|ZP_03009414.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
 gi|189432588|gb|EDV01573.1| hypothetical protein BACCOP_01270 [Bacteroides coprocola DSM 17136]
          Length = 637

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 173/572 (30%), Positives = 272/572 (47%), Gaps = 23/572 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGNRNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +            P AL + PTREL +Q+  +L       T + +    GG S+  
Sbjct: 61  LIQKIDVTK------RIPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K   +  ++ VV+DEADEML++GF D I  IL+  
Sbjct: 115 QIRSLKQGVHIIVATPGRLIDLMERKVARLETIRDVVMDEADEMLNMGFTDSINAILEQV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  LMFSAT+SP I  +AK Y  +A  + I ++N    ++ + A +V   D+  A+ 
Sbjct: 175 PEDRNTLMFSATMSPEIARIAKTYLHNAKEITIGTKNEGSKNVHHIAYIVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RVVDYYPQIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRYLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYALPDDTESYTHRSGRTGRAGKTGISIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHD 412
             + R  N        PS + I E+   +++ D   +  +  DE +     +   L    
Sbjct: 355 REIERIINKKFTISTLPSGKEICEQQLIKVIDDIEKV-KVNEDEIEAFLPGIYRKLEWLS 413

Query: 413 PEKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            E +     +  F R       APE   P +     +      R       +R   KG +
Sbjct: 414 KEDLIKRVVSMEFNRFLEYYKNAPEIEQPKANEKSNEAKERKDRGSDREKVARKAEKGYT 473

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK- 526
              L++G      A  ++ ++ R+       IG I +  + +F EV      ++ + +  
Sbjct: 474 RLFLNLGKTDGFYANQIIELINRNLKKEHIQIGRIDLMQNFSFFEVVESQASMVMKALNK 533

Query: 527 --LDKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
             L+KG ++      +   +  KS   + K S
Sbjct: 534 VTLNKGRKVIVEIAGENTGKSDKSGKKRGKES 565


>gi|167756706|ref|ZP_02428833.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|237732712|ref|ZP_04563193.1| helicase [Mollicutes bacterium D7]
 gi|167702881|gb|EDS17460.1| hypothetical protein CLORAM_02244 [Clostridium ramosum DSM 1402]
 gi|229384207|gb|EEO34298.1| helicase [Coprobacillus sp. D7]
          Length = 535

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/541 (28%), Positives = 263/541 (48%), Gaps = 24/541 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + G+   + +QE  +   L   DV+  AQTG+GKT+AFG  L S +    
Sbjct: 11  LSNEVLKAIEDMGFSKPSKIQEEAIPVLLTGVDVIGQAQTGTGKTLAFGSVLLSKITPSQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P A+ ++PTRELA+Q+  E+E +    G  +    GG  + R+ R ++ G  
Sbjct: 71  RKL-----PQAIILSPTRELAMQIHEEMERIGKYNGSRITCVYGGSDIERQIRTIKKGID 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D +R   L ++ +K VVLDEADEML++GF +DIE IL+     R+ ++FS
Sbjct: 126 IIVGTPGRVMDLMRRNVLKLNDVKFVVLDEADEMLNMGFVEDIETILEKVDDDRQTILFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  +A+NY  D        S+    + +      V   DR  A+  ++     +
Sbjct: 186 ATMPAGIKKIAQNYMHDNFEHVAVLSKQTTATSVKQFYYEVKQKDRFEAMCRLIDVANVQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+ SV   T+ + +  + V A+ G+LSQ  R N L+  + G     IATDVAA
Sbjct: 246 TGIIFCRTKRSVDEVTEQMQQANYNVEAMHGDLSQNHRMNTLRKFKKGTINFLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  VI+ EL  + E+ +HR GRTGRA ++G +  +I    +    ++ R    
Sbjct: 306 RGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGQAYSIITPREKGFLRQIERVTKS 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA---AGFLR 422
           S+     P+++ I E     ++      D I     K    L+ + DP  +A   A  + 
Sbjct: 366 SITKATIPTLQEISEAKIGTLVSKVE--DQILAGNHKKFKQLVNEIDPTMLADFTAALMY 423

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +        +        +   + R+  R          N K  +   ++ GS  + +A 
Sbjct: 424 MTFQEQLGYDYKRDTIQEASEGKRRERGRG---------NNKDYTRIFITAGSMDRVKAP 474

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGG 538
            ++      +G+ ++ IG I ++   TFV+++       VD   +    ++ I+++    
Sbjct: 475 QIVNFFVSKAGVRKEDIGDIDIKRKFTFVDINKKVINKVVDKCNKQKINNRKIEIEIANK 534

Query: 539 E 539
           +
Sbjct: 535 K 535


>gi|326537854|gb|ADZ86069.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella melitensis
           M5-90]
          Length = 575

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 246/549 (44%), Positives = 347/549 (63%), Gaps = 36/549 (6%)

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +AFGLA+A+T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG
Sbjct: 1   MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  ERR L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EF
Sbjct: 61  MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL  +P+ RR LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +R
Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+AI+N L Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MR
Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P +
Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R AERL   A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++
Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------- 458
            PE+IA+ FL    A   A EE++   +     +     R  K                 
Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420

Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              R+      WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A 
Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480

Query: 517 GVDLLRRTVKLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQ 557
             D  R++V  ++G   K L                   G  KP    +K  GF+  +  
Sbjct: 481 KADEFRQSV-AERGTGEKSLVIRTAVTGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539

Query: 558 DGATKRFKR 566
           D   + F R
Sbjct: 540 D-KPRDFSR 547


>gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 597

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 159/595 (26%), Positives = 268/595 (45%), Gaps = 28/595 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F  +     +  A+S  G+   T +QE  +   L    D +  AQTG+GKT AFGL 
Sbjct: 1   MNPFSQLGIRHDVVNAISALGFEKPTPIQEQAIPALLTGSSDFVGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   L          + P AL + PTREL +Q+  +L+        V  V   GG ++  
Sbjct: 61  LLELLDFSQ------NTPQALVLCPTRELCLQITNDLKNFSKNLDNVHVVAVYGGANISD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ G  IVV TPGR+ D I  K ++ S ++ VVLDEADEML++GF++DI  IL ++
Sbjct: 115 QLRQIRRGVQIVVATPGRMLDIIGRKAIDFSGVRYVVLDEADEMLNMGFQEDINDILSTT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +++  +FSAT+   +  +AKNY  D   + + ++N  +++ID+   +V   D+  A  
Sbjct: 175 PDEKKTWLFSATMPAEVRRIAKNYMTDPFELTVGTKNTGNANIDHEYYIVRPRDKYAAFK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ ++     IVFC T+       + L +  +   +L G+LSQQ+R   ++  R+   +
Sbjct: 235 RIVDFNPEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERSLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ ++  VI+  L    EN  HRSGRT RAG+ G+S+ ++      + 
Sbjct: 295 LLIATDVAARGIDVNNVTHVINFSLPDEIENYTHRSGRTARAGKTGVSISLVTSKELGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            ++ R      V    P+   + E+    ++     ++      G     +    +    
Sbjct: 355 RQIERVIGKQFVKAEIPNGFDVCEKQLFALVHKVKAVEVNDDQIGQYLPRIMDEFSDFSK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +   F  +         E  P   VS     R +        G        +   +++
Sbjct: 415 EDVIKHFASLEFNRFLDYYENAPDLNVSAATDSRSEKGGKADRFGRTGYKSDFTRLFINL 474

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL----LRRTVKLDK 529
           GS        ++  +C ++ I+ +SIG I ++   TF EV  D VD      +R     +
Sbjct: 475 GSVDDFTRGDMLGYICNNAQISGKSIGKIDLKGVYTFFEVENDVVDKIMSGFQRADFNGR 534

Query: 530 GIQLKYLGGEKPD-----------FRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            ++++  G                       G + +    G    F+ F G  + 
Sbjct: 535 SVRVELAGDRDAGPSRGGSSRSGRSSRSSGRGGRDRERDSGNGGGFRDFSGKRRE 589


>gi|86145756|ref|ZP_01064085.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
 gi|85836455|gb|EAQ54584.1| ATP-dependent RNA helicase DeaD [Vibrio sp. MED222]
          Length = 665

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 157/556 (28%), Positives = 267/556 (48%), Gaps = 22/556 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +    
Sbjct: 13  LNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HK------PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y ++  +V++A  N     +     +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFL 421
            +     P  + +      ++  +     +S   +    +   L    + D   +AA  L
Sbjct: 367 QMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLL 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-------FKVGGGSRDNFKGSSWFSLSVG 474
           +  + G      +    +++  +R ++  +         + GGG   N +    + L VG
Sbjct: 427 K-RQQGKSPLFYVGEDPMIAAIERDKNRRKERREDRDNGRDGGGRNFNTQDWDTYQLQVG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQL 533
            +Q  + + ++  L    G+ + SIGAI++    T+V++            KL K  I+ 
Sbjct: 486 REQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNS--ETAGKLSKLRIRQ 543

Query: 534 KYLGGEKPDFRGYKSS 549
           K  G    DF  ++  
Sbjct: 544 KEAGAVVVDFNDFREP 559


>gi|110834556|ref|YP_693415.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110647667|emb|CAL17143.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 551

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/521 (27%), Positives = 244/521 (46%), Gaps = 17/521 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+V+  A++ +G+   + +Q   +   L   D+L  AQTG+GKT AF L L + L    
Sbjct: 13  LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLARLDPS- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E        +  +   GG     + + L+ GA
Sbjct: 72  -----LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRGGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    + +++LKA+VLDEADEML +GF DD++++L+ +P   ++ +F
Sbjct: 127 QVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLALF 186

Query: 186 SATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+ P I  +A  + K               + I  R   VA  ++ +A+  IL     
Sbjct: 187 SATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAEEH 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+ +     + L     +  AL+G++ QQ+R   +Q ++D R  + IATDV 
Sbjct: 247 DAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ ++  +PE  +HR GRTGRAGR+G ++  + +  Q    ++ R   
Sbjct: 307 ARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERITR 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLA---KHDPEKIAAGF 420
            S+     PSV+ +  +   R  +    F      DE + +   L          +AA  
Sbjct: 367 QSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVDEARALVNQLRDAMDISDNDMAAAL 426

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             +         +   +     R        R + R  +  G      K    + + VG 
Sbjct: 427 ATMMFKREPLILKEPKMVKEPRRRESAHVGGRREDRNPRNRGDKGRTDKTMRRYRIKVGH 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               +   ++  +   + +  + IG I++  D + VE+  D
Sbjct: 487 DHGVKPGNIVGAIANEAKLPSRLIGPIKIHQDHSTVELPED 527


>gi|84385216|ref|ZP_00988248.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
 gi|84379813|gb|EAP96664.1| ATP-dependent RNA helicase DeaD [Vibrio splendidus 12B01]
          Length = 673

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 161/555 (29%), Positives = 263/555 (47%), Gaps = 20/555 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +    
Sbjct: 13  LNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HK------PQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y ++  RV++A  N     +     +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFL 421
            +     P  + +      ++  +     +S   +    +   L    + D   +AA  L
Sbjct: 367 QMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLL 426

Query: 422 RIHRAGLC------APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +  +           P         + R   R+D    + GGG   N +    + L VG 
Sbjct: 427 KRQQGKSPLFYVGEDPMIAAIERDKNRRKDRREDRDNGRDGGGRNFNTQDWDTYQLQVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLK 534
           +Q  + + ++  L    G+ + SIGAI++    T+V++          T KL K  I+ K
Sbjct: 487 EQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNS--ETTGKLSKLRIRQK 544

Query: 535 YLGGEKPDFRGYKSS 549
             G    DF  ++  
Sbjct: 545 EAGAVVVDFNDFREP 559


>gi|42527612|ref|NP_972710.1| DEAD-box ATP dependent DNA helicase [Treponema denticola ATCC
           35405]
 gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
           denticola ATCC 35405]
          Length = 570

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 161/576 (27%), Positives = 267/576 (46%), Gaps = 29/576 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  ++ +A+  +G+   T +Q   +   L  + +V+  A+TG+GKT AFGL L   L + 
Sbjct: 10  LDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLVQELRSN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL + PTRELAVQV  ELE    +    +A   GG ++  + R L+ G 
Sbjct: 70  TGKV------RALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLKTGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+    L I  ++  +LDEADEML++GF +DIE I   +  + R+LMF
Sbjct: 124 EIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARVLMF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I ++A ++  D   V    +  + S  +    +V   D+  A+V ++      
Sbjct: 184 SATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTSPNF 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+       K L E  ++  AL G++ Q +R   L+  R  + R+ +ATDVAA
Sbjct: 244 YGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V++  +  +     HR GRTGRAG  G++V  +  N  +R E L + A  
Sbjct: 304 RGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKHARG 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAKH-DPEKIAA 418
            +     PS+E + E    RIL++       +  E+K           L ++ D + + +
Sbjct: 364 ELKEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQTVLS 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             L++      +P     +  V             +  G +R +   S    + VG K  
Sbjct: 424 FILQMQYGSFLSPAHYKTIKPV-------------RSEGKARKSDDDSLRLYIGVGRKDG 470

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG- 537
              R L  ML R   I  + +  I V    +   +  +  +   R  K  +G+   ++  
Sbjct: 471 ITKRKLAEMLSRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDV 530

Query: 538 -GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             E P   G    G + +  ++G  ++ +    ASK
Sbjct: 531 KSEAPTNYGSIGKGKRGQKRKNGTQRKKEGLSSASK 566


>gi|307245436|ref|ZP_07527524.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307247549|ref|ZP_07529593.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307254390|ref|ZP_07536228.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256597|ref|ZP_07538378.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258849|ref|ZP_07540581.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307261031|ref|ZP_07542713.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263212|ref|ZP_07544832.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306853777|gb|EFM85994.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855914|gb|EFM88073.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306862689|gb|EFM94645.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865007|gb|EFM96909.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867200|gb|EFM99056.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869333|gb|EFN01128.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871429|gb|EFN03153.1| Cold-shock DEAD box protein A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 593

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/598 (25%), Positives = 261/598 (43%), Gaps = 52/598 (8%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
             + +Q+  +   L  +DVL  AQTGSGKT AF L L + +            P  L +A
Sbjct: 2   TPSPIQQETIPHLLAGRDVLGMAQTGSGKTAAFSLPLLAQIDPTK------RHPQMLVMA 55

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
           PTRELA+QV    E        V  V   GG     + R L+ G+ +VVGTPGR+ DHIR
Sbjct: 56  PTRELAIQVADACEQFTKNMKGVNVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIR 115

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              L++S L+++VLDEADEML +GF DD+E ++   P+  +  +FSAT+   I  + + +
Sbjct: 116 RGTLDLSALQSIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRF 175

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
            +D   V I +  R   DI     LV    +++A++  L       AI+F  T+      
Sbjct: 176 MQDPQEVKIQATQRSAPDITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDI 235

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
           T++   + ++  AL+G+++QQ R   L  ++ GR  + +ATDVAARGID+  + LV++ +
Sbjct: 236 TELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILVATDVAARGIDIERISLVVNFD 295

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           +  + E+ +HR GRTGRAGR G ++  +    +R    +       +     P+ E +  
Sbjct: 296 IPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHLMKKPIDEVAIPNHEILMA 355

Query: 381 RDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           +  ++    +   L    ++   + + D+  A  D E++AA  + + +          P 
Sbjct: 356 KRREKFKARVSKQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMMLQEKQKLILPPDPE 415

Query: 438 --------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
                         DR               +N      + + +G +   E R ++  + 
Sbjct: 416 IRAARGERGRRDRDDRRGGRDERRGGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIA 475

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLL-----RRTVKLDKGIQLKYLG-----GE 539
               I+ + IG I++    + +E+     + +     ++   L+K +Q+  LG       
Sbjct: 476 NEGDISSRYIGHIKLHDTYSTIELPQGMPNHIVQHFAQKARVLNKQMQMSLLGPAGGVNS 535

Query: 540 KP------------------------DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           +P                             +  GF  +       KRF       ++
Sbjct: 536 QPFEERRGGGRRNDRNDRNDRRSDRGGRSDRREGGFNDRKKGGFKEKRFNDKGRGRRD 593


>gi|254443756|ref|ZP_05057232.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258064|gb|EDY82372.1| DbpA RNA binding domain family [Verrucomicrobiae bacterium DG1235]
          Length = 603

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 154/568 (27%), Positives = 263/568 (46%), Gaps = 53/568 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +AL E GY   + +Q   +   L  +D++  AQTG+GKT AF L L S L   
Sbjct: 18  SLSQPVQDALVEIGYETPSPIQARAIPVVLSGRDLIGQAQTGTGKTAAFALPLLSMLDPN 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
            D       P A+ +APTRELA+QV   +     K   +      GG    R+ R L   
Sbjct: 78  ED------GPKAIILAPTRELALQVSEAISNYGRKVKRLEVTAIYGGTDFTRQFRALDRK 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DHIR   L++S +  VVLDEADEML +GF +D+E+IL+ +P +R+  +
Sbjct: 132 PAIVVGTPGRIMDHIRRGSLDLSRISHVVLDEADEMLRMGFIEDVEWILEHTPSERQTAL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHG 243
           FSAT+ P I  +AK   K+ V V I +     S +  R +    +  +   + N+L    
Sbjct: 192 FSATMPPRIAAIAKKQLKEPVTVAIKNTTATVSTVRQRFIKCNGMRHKIEVLGNLLETEE 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF  T+++ S   + LA     V A+ G+++Q +R  A+ ++++G+  + +ATDV
Sbjct: 252 RDAAIVFTRTKSAASMIAEELAASGHAVEAIHGDITQNKREKAVSLLKEGKIDILVATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  V + ++  + E  +HR GR GRAGR G ++ ++ +   R+   +    
Sbjct: 312 AARGLDVDRISHVFNFDIPDDAEPYIHRIGRAGRAGRSGEAILLLTRRDFRKLRDIEDAT 371

Query: 364 NVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAG 419
              +   P PS   +  IR+   ++ + + +    I  +   + D L   + D E +AA 
Sbjct: 372 RQQMQPMPPPSRALIAEIRQAKLEKKIGEIITEGRINRERTAVTDALANLETDAETLAAA 431

Query: 420 FLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGGGS------------------- 459
            L++ + G   P      +  S  R+  R++ R  +   G                    
Sbjct: 432 LLKMLQTGKSLPSSAPASASPSFDREPRRENFRDSRESRGPRNDRDFDRDRGPRRERPST 491

Query: 460 ---------------------RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQS 498
                                         + + VG   + +   ++  +   +G+  + 
Sbjct: 492 RPERDFDSSPRSRPERRREDAPAPAADVERYRVEVGHNHQIKPGNIVGAIANEAGLEAKY 551

Query: 499 IGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           IG I +  D + V++       + + +K
Sbjct: 552 IGRIDIYDDYSEVDLPKGMPKEVLKLLK 579


>gi|326773277|ref|ZP_08232560.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
 gi|326636507|gb|EGE37410.1| cold-shock DEAD box protein A [Actinomyces viscosus C505]
          Length = 865

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 156/611 (25%), Positives = 276/611 (45%), Gaps = 48/611 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +A+++ G+V  T++Q+  +   L  +DV+  AQTG+GKT AFGL L  
Sbjct: 163 TFADLGLPGDLLKAVTDMGFVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLD 222

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +       S  +   AL +APTRELA+Q    +  + A++  +  V   GG     +  
Sbjct: 223 AVD------SRDNVVQALVLAPTRELALQSAEAITDMAARSRGLEVVAVYGGAPYGPQIG 276

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I +S P  
Sbjct: 277 ALKGGAQVVVGTPGRVIDLIDKGALQLDDVRYFVLDEADEMLRMGFAEDVETIAESLPAD 336

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+ PAI  +A+ +  + V+V ++      + +     +V    +  A+  +L
Sbjct: 337 RRTALFSATMPPAIQAVARQHLHEPVQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVL 396

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +
Sbjct: 397 AVTDAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRAGTLDVLV 456

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V  +    + +  ++
Sbjct: 457 ATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQI 516

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS---------IQGDEKKMVDVLLAK 410
            R     +     PS   + E  A+++L                 +  D  + +D+ + +
Sbjct: 517 ERLTGSRLEEITLPSPADVSEHRARKLLSKAAARHERGRLDMYLPLVADSARELDIDVEE 576

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVS-----------------GRDRFRDDSRAF 453
                +A                  P                      GR++ R   R  
Sbjct: 577 LAATLLALAVGDEGPRRREDRGGERPQRARREENLDSEGTFLSASFEGGREKGRRAERGD 636

Query: 454 KVGG-------GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           +  G       G R++    + + + VG + +     ++  L    GI    IG I +  
Sbjct: 637 RGEGRRSATRSGRREHEGPGTVYRVEVGHRDRVLPGAIVGALANEGGIEGSDIGKIDILQ 696

Query: 507 DLTFV----EVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNS--QDGA 560
             + V    ++S + + ++ R     + ++++   G    + G   +  + K    +D  
Sbjct: 697 SFSLVTIYADLSPEQLSVMGRATFAGRELRIRPDEGPGHGWSGPNGAERRPKRRDWEDRK 756

Query: 561 TKRFKRFKGAS 571
            +  +  +G  
Sbjct: 757 DRGDRSDRGER 767


>gi|254226977|ref|ZP_04920540.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
 gi|125620490|gb|EAZ48861.1| ATP-dependent RNA helicase DeaD [Vibrio cholerae V51]
          Length = 576

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 159/544 (29%), Positives = 262/544 (48%), Gaps = 28/544 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + L    
Sbjct: 33  LNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQ 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA
Sbjct: 93  YK------PQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMRALKSGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++      +LDEADEML +GF DD+ +I++ +P+  + ++F
Sbjct: 147 HIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPESAQRVLF 206

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D   V++A  N+  + ++ +  +V   ++D A+  +L      
Sbjct: 207 SATMPPMVKEIVERFLRDPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETD 266

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 267 ASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 326

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 327 RGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTRS 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDPEKIAAGF 420
           S+     P  + + E    ++ Q+          E+     + +   L + D   +AA  
Sbjct: 387 SMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL-EIDATTLAAIL 445

Query: 421 LRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           L+  +             + A E           DR   D  A +  GG          +
Sbjct: 446 LKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDQENHDWDTY 505

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525
            L VG  Q  + + ++  L    G+ + SIGAI++    TFV++      D    LR+  
Sbjct: 506 QLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSNDVSSKLRKLR 565

Query: 526 KLDK 529
              K
Sbjct: 566 IRQK 569


>gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
          Length = 569

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +  +    S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNIDLK----SRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 ECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|237736924|ref|ZP_04567405.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229420786|gb|EEO35833.1| ATP-dependent RNA helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 545

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 150/546 (27%), Positives = 251/546 (45%), Gaps = 36/546 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + +   +AL+++GY   T +Q   +   L   KD++  AQTG+GKT AF L +       
Sbjct: 12  LSEKTLKALAKKGYEQPTPIQALTIPALLNGDKDIIGQAQTGTGKTAAFSLPILEN---- 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F P+    A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G 
Sbjct: 68  ---FEPSKVIQAIVLAPTRELALQVAEEMNSLAHGKKIRITPVYGGQSIEFQIRQLKKGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D +  K + +  LK  +LDEADEML++GF +DIE IL+++ + +RML F
Sbjct: 125 DIIVGTPGRVIDLMERKLIKLQDLKYFILDEADEMLNMGFVEDIEKILEATNEDKRMLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AKN+ KD   + + +        D     V   D+  A+  I+      
Sbjct: 185 SATMPNEIMKIAKNHMKDYEVLAVKARELTTDLTDQIYFEVHEKDKFEALCRIIDLTRDF 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+   +     L +  +    L G++SQ  R   L+  +  +  V +ATDVAA
Sbjct: 245 YGIVFCRTKNDANDLVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  ++ R    
Sbjct: 305 RGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQRIVKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  E  P ++ + +    R++++   +  +    + K     LL       + A  L+ 
Sbjct: 365 EIRKERVPEIKDVIQAKKFRLMEELNNILAEGNYDNFKDFAKELLNGEQALDLVAALLKH 424

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               +        +S V                        G     +++G K     + 
Sbjct: 425 AYDDILDENNYNEISEVK-------------------LEKSGKVRLFIALGRKNAMTPKK 465

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           L+  + + S ++ + I  + V  + +F+ V     +++    + DK        G+KP  
Sbjct: 466 LVDYVIKKSKVDDRKIKNVEVFENFSFMSVPFTEAEIILEAFQKDK-------NGKKPLV 518

Query: 544 RGYKSS 549
              K  
Sbjct: 519 EKAKDK 524


>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010493|ref|ZP_02275424.1| hypothetical protein Ftulh_07207 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312305|ref|ZP_06803094.1| DEAD/DEAH box helicase domain-containing protein [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           holarctica 257]
 gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 569

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVQFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRYELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|255010251|ref|ZP_05282377.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 636

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 276/587 (47%), Gaps = 27/587 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQKINVKN------RIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     IVFC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  V    R     ++ + G   R    G +   
Sbjct: 412 LSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAVKS-RDGKSGRQAEPGFTRLF 470

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +  + +F EV       + + +     
Sbjct: 471 INLGKMDNFFPHELITLLNNNTR-GRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW 529

Query: 528 -DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + + ++  G E P  R  +  G +++ S  G   R        K+
Sbjct: 530 NGRKVTVEVAGEEAPTER--RGRGKRNEGSDKGGKGRNTAASADRKD 574


>gi|323499260|ref|ZP_08104237.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
 gi|323315648|gb|EGA68682.1| cold-shock DEAD-box protein A [Vibrio sinaloensis DSM 21326]
          Length = 646

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 170/629 (27%), Positives = 292/629 (46%), Gaps = 66/629 (10%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++     I  AL   G+V+ T +Q A +   +   D L  AQTG+GKT AF L L
Sbjct: 5   VTQFSDLALNDSILSALEGMGFVSPTPIQAASIPHLMEGVDALGKAQTGTGKTAAFSLPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
            + L     +      P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  +
Sbjct: 65  LNKLDLGQRK------PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGTSIVDQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L++GAHIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P
Sbjct: 119 MRALKHGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTAIMEHAP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + ++FSAT+ P +  + + + ++ V +++A +N     ++ +  +V   ++D A+  
Sbjct: 179 ESAQRVLFSATMPPMLKNIVERFLREPVTIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   +
Sbjct: 239 LLETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R   
Sbjct: 299 LVATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDP 413
            + R    S+     P  + + E    ++  +       +  EK  ++V+ L    + D 
Sbjct: 359 TIERVTKSSMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDA 418

Query: 414 EKIAAGFLRIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-- 468
             +AA  L+     R      E+    ++   + R ++     + G G   NF    W  
Sbjct: 419 ATLAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRGRDRNFNNQDWDT 478

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRT 524
           +   VG +Q  + + ++  L    G+ + SIGAI++    T+V++      D    LR+ 
Sbjct: 479 YQFQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSDTAGKLRKL 538

Query: 525 VKLDKGI--------------------------------------QLKYLGGEKPDFRGY 546
               K +                                           GG + +  G 
Sbjct: 539 RIRQKQVDAVVCDFNDFREPRRGGGRDGGRGRDGGRREGGYRGNRDGNREGGYRGNRDGN 598

Query: 547 KSSGFK-----SKNSQDGATKRFKRFKGA 570
           +  G++      + S+DG  +RF R +G 
Sbjct: 599 REGGYRGNREGGRGSRDGE-RRFDRNRGG 626


>gi|19705271|ref|NP_602766.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713234|gb|AAL94065.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 528

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 158/554 (28%), Positives = 258/554 (46%), Gaps = 38/554 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + I + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLSEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + I +  I    V    +FV V     +++      ++      
Sbjct: 461 KDGMTPKKLVEFIIKKAKIKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR------ 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 -KGKKPLIEKAKSK 527


>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 569

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRYELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|308050678|ref|YP_003914244.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
 gi|307632868|gb|ADN77170.1| ATP-dependent RNA helicase CsdA [Ferrimonas balearica DSM 9799]
          Length = 649

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 163/628 (25%), Positives = 268/628 (42%), Gaps = 67/628 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  ALS  G+ + T +Q   +   L   D+L  A TG+GKT AFGL   + +    
Sbjct: 12  LPESLLSALSAMGFTSPTPIQAQAIPFMLDGHDILGEAATGTGKTAAFGLPALAGIDPRQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A   L +APTRELA+QV   LE       G+ V    GG     + RDL+ G 
Sbjct: 72  ------RAAQMLVLAPTRELAIQVATALEEFAVNMKGMRVTTLYGGQPYGPQLRDLERGT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL DHIR   + +  ++  VLDEADEML++GF +DIE+IL+  P + +M +F
Sbjct: 126 QVVVATPGRLMDHIRRGSIELDSIQCCVLDEADEMLNMGFLEDIEWILEHLPDQTQMALF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ + KD   V IAS+  Q ++I  +A  V+  ++  A+  +       
Sbjct: 186 SATMPNQIRRIAERFLKDPKHVKIASDRTQKANIVQKAWKVSGLNKLTALERLSETLDYD 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR         L    F+  AL+G++SQQ+R + +  +  G+  + IATDV A
Sbjct: 246 AMIVFVRTRNDTMELANHLNNMGFKAAALNGDMSQQQREHTVAQLHKGKINILIATDVVA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V++ +L  + E+ +HR GRTGRAGR G ++        R+     R    
Sbjct: 306 RGLDVPRITHVLNFDLPMDSESYVHRIGRTGRAGRSGEAILFARPRELRQLRFYERSTGG 365

Query: 366 SVVWEPAPSVEAIRERDAQR----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           ++     P+ E + +    +    + +     D  +            +   E++AA  L
Sbjct: 366 TIEMMEMPTAEELGKHRVAKLSVELAECVAQTDLAEMTGMLQEMAEQNELSMEQLAAALL 425

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-----SWFSLSVGSK 476
              +       +  P       +R     R  +   G R   K         + L VG +
Sbjct: 426 FQRQRSKPLKPKADPAPRFERGERGERGERGERGERGERRERKPRPDIQWDTYRLEVGRE 485

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQ 532
              + + ++  +     +    IG IR+    + V++     AD +  L+      + + 
Sbjct: 486 HGTQVKDIVGAIANEIQLESNYIGQIRLHDAHSLVQLPAAMPADVLSKLKSVTVRSRPLA 545

Query: 533 LK---------------------------------------YLGGEKPDFRGYKSSG--- 550
            +                                          GE  +FRG +      
Sbjct: 546 AERTNEVIEPRPRREGGRDDRRGGFRGEGRRRDGDNSNFRGRRDGENSNFRGRRDGDNSN 605

Query: 551 FKSKNSQDGATKRFKR-----FKGASKN 573
           F+ +   D +  R +R     F+G   +
Sbjct: 606 FRGRRDGDNSNFRGRRDGDSNFRGRRDD 633


>gi|18310378|ref|NP_562312.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|110801126|ref|YP_696091.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110803627|ref|YP_698708.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|18145058|dbj|BAB81102.1| ATP-dependent RNA helicase [Clostridium perfringens str. 13]
 gi|110675773|gb|ABG84760.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
 gi|110684128|gb|ABG87498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 528

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 152/549 (27%), Positives = 263/549 (47%), Gaps = 33/549 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + + +A+ + G+   + +Q   +   L   D++  AQTG+GKT AFG A+ + 
Sbjct: 6   FDDLGLKESLLKAIKDMGFEEPSQIQAESIPVALEGHDIIGQAQTGTGKTAAFGCAIINN 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 +     +P AL +APTRELA+QV  EL  L     + V    GG  + R+ R L
Sbjct: 66  ADFSGKK----KSPKALILAPTRELAIQVNEELVRLGKHEKLSVLPIYGGQPIDRQIRAL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  IVVGTPGR+ D IR K L ++ +  +VLDEADEML++GF DD+E I+ S    R+
Sbjct: 122 KNGVDIVVGTPGRVLDLIRRKSLPLNDIGFLVLDEADEMLNMGFIDDLEEIVKSLKTDRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILR 240
            L+FSAT+ P I  LA+NY K+  +     ++    S I+     +   DR   +  +L 
Sbjct: 182 TLLFSATMPPQIKKLARNYMKEDTKHIAIKKSSLTVSKIEQFYFEIKHRDRFETLCRVLD 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +     AI+FC T+  V    + +    + V  + G++SQ  R   L+  ++G     +A
Sbjct: 242 FDEPNAAIIFCKTKKGVDEVVEKMQARGYMVEGMHGDMSQNHRLQTLRKFKEGSLDFLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +  VI+ +L  + E+ +HR GRTGRA R+G++  ++        +++ 
Sbjct: 302 TDVAARGIDVESVTHVINYDLPQDNESYVHRIGRTGRANREGVAYSLVTPKEYMMLKQIQ 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLL---AKHDPEKI 416
           +     ++ +  P+V+ I +     I+ +     +    D +K + +       +    +
Sbjct: 362 KHTKSKIIRKAVPTVDEIFQNKHNNIINNVKSTIEEASEDFQKFIPIATQLDEDYSLVDV 421

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA  L+I                      F  +S                +   +SVG +
Sbjct: 422 AAALLKIV---------------------FDKESSFDYTSNSIEAPVMDETRLFMSVGRR 460

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                + L+  L  ++ I+ + +G I ++ +  F  V AD V+ + +   + K +  + +
Sbjct: 461 DGITPKSLVNFLKETARISPKQVGDIDIKENFCFANVDADAVNNIMK-KSMGKKLNKRTV 519

Query: 537 GGEKPDFRG 545
             E    R 
Sbjct: 520 NIEVAKKRK 528


>gi|218676896|ref|YP_002395715.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218325164|emb|CAV27059.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 689

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 157/553 (28%), Positives = 266/553 (48%), Gaps = 18/553 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +    
Sbjct: 41  LNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQ 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 101 HK------PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVLEIYGGASIVDQMRALSRGA 154

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++F
Sbjct: 155 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 214

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y ++  +V++A  N     +     +V   ++D A+  +L      
Sbjct: 215 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLLETEETD 274

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 275 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 334

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 335 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 394

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLA---KHDPEKIAAGFL 421
            +     P  + +      ++  +     +S   +    +   L    + D   +AA  L
Sbjct: 395 QMEEIQLPQRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAATLAAMLL 454

Query: 422 RIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-NFKGSSWFSLSVGSKQ 477
           +  +         E+    ++   ++R ++       G G R+ N +    + L VG +Q
Sbjct: 455 KRQQGKSPLFYVGEDPMIAAIERDKNRRKERREDRDNGRGDRNFNTQDWDTYQLQVGREQ 514

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLKYL 536
             + + ++  L    G+ + SIGAI++    T+V++            KL K  I+ K  
Sbjct: 515 GVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNS--ETAGKLSKLRIRQKEA 572

Query: 537 GGEKPDFRGYKSS 549
           G    DF  ++  
Sbjct: 573 GAVVVDFNDFREP 585


>gi|296328514|ref|ZP_06871033.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154323|gb|EFG95122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 528

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 158/554 (28%), Positives = 258/554 (46%), Gaps = 38/554 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + S I +  I    V    +FV V     +++      ++      
Sbjct: 461 KDGMTPKKLVEFIVKKSKIKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR------ 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 -KGKKPLIEKAKSK 527


>gi|260495553|ref|ZP_05815678.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196895|gb|EEW94417.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 528

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 156/554 (28%), Positives = 259/554 (46%), Gaps = 38/554 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F ++   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKARLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + + +  I    V    +FV V     +++      ++      
Sbjct: 461 KDGMTPKKLVEFIVKKAKVKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR------ 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 -KGKKPLIEKAKSK 527


>gi|269104706|ref|ZP_06157402.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161346|gb|EEZ39843.1| cold-shock DEAD-box protein A [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 647

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 165/586 (28%), Positives = 282/586 (48%), Gaps = 31/586 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +  AL + G+V  T +Q A +   L   D L  AQTG+GKT AF L L + L   
Sbjct: 12  ELADTLLSALDKMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPLLNKLKLS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QHK------PQAIVMAPTRELAIQVAAEVKTLGQNIQGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I    L++  +   VLDEADEML +GF DD+ +I++ +P+  + ++
Sbjct: 126 AHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +   + ++  R+++A ENR  + +D +  +V   ++D A++ +L     
Sbjct: 186 FSATMPPIVKEIVDRFLRNPARIDVAGENRTVAKVDQQFWVVKGVEKDEAMMRLLETEDT 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L    F+  AL G++ Q  R   ++ ++ G   + +ATDV 
Sbjct: 246 DASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G ++ ++  N  R    + R   
Sbjct: 306 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGREGKAILLVRTNQIRMLRTIERVTK 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAG 419
             +     P  +A+ E    R+ ++ L     Q   +  V+++       + D   +AA 
Sbjct: 366 SRMEEIQLPLRDAVAEARLNRLAKE-LEAQKEQSSVEAFVELVEKLQESIEVDAATLAAM 424

Query: 420 FLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-----------NFKGSS 467
            L+  +       +   P+     RD+ R D R      G R            N     
Sbjct: 425 LLQRQQGNRPLFYKGPDPMIAALERDKQRRDRRGNDRDRGERGERGERRERRTFNAADWD 484

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRR 523
            + L VG +Q  + + ++  +    G+N+  IGAI++ P+ T+V++     A+    L++
Sbjct: 485 TYQLQVGREQGIQVKDVVGAIANELGLNKDFIGAIKLAPEHTYVQLPKKMTAEVAAQLKK 544

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
                  ++   + GE    R ++  G       +    R  R   
Sbjct: 545 LRIRQNEVKAVVVDGEV--LREHRRGGRDGNRDGNRGGYRGNRDGN 588


>gi|167752241|ref|ZP_02424368.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
 gi|167660482|gb|EDS04612.1| hypothetical protein ALIPUT_00483 [Alistipes putredinis DSM 17216]
          Length = 650

 Score =  280 bits (715), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 163/569 (28%), Positives = 271/569 (47%), Gaps = 32/569 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  A++++G+   +++Q   +   L  +KD++  AQTG+GKT AFGL +   L   
Sbjct: 12  LSDDILTAIAKKGFETPSAIQSLTIPHLLTTDKDIIAQAQTGTGKTAAFGLPIIQML--- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  + P A+ + PTRELA+QV +EL   +    + +A   GG S+  + R L+ G 
Sbjct: 69  ---TSRRNIPQAIVLVPTRELALQVTQEL-ISFNTHDLSIAPIYGGASMTEQLRRLKKGI 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHIR   L++S +  +VLDEADEML++GF +DIE I+ +    +R+L+F
Sbjct: 125 DIVVGTPGRILDHIRRGTLDLSAIAYLVLDEADEMLNMGFIEDIEEIMHAMTGPKRVLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+NY  +   + + S++      +     V   D+ +A+  I+      
Sbjct: 185 SATMPDRIAALARNYMHEPDLLKVESQHVTTDLTNQIYFEVREGDKFDALTRIIDVEPEF 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  TR         L E  +    L G++SQ +R   L   +  +  + +ATDVAA
Sbjct: 245 YGIVFSRTRTGADDIVAKLLERGYAAEVLHGDISQAQREKILGKFKKKQVNILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+  L  + ++ +HR GRTGRAG +G ++  I  +  R+   L R    
Sbjct: 305 RGIDVSNLTHVINYSLPQDSDSYVHRIGRTGRAGNQGTAITFISPSEMRKFGFLKRTIKA 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  E  P+   I      +I +  D +      G+   M   LL  + PE   +  LR+
Sbjct: 365 DIKLEQLPTPADIIATKRNKIKEDLDAIVESESYGECTGMAAELLESYPPEVALSALLRL 424

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                 +      +  +                     + KG +   L+ G++   + R 
Sbjct: 425 AFKNELSESSYPEIRSID-------------------VDRKGKARIFLAFGARDGYDTRK 465

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV-KLDKGIQLKYLGGEKPD 542
            + +L +  G++   I  +RV  D +F  V  D  + + RT+ KL  G  +  +  + P 
Sbjct: 466 TVRLLKQECGLSDHDIDDVRVMEDFSFATVPFDQAEKVVRTLNKLSHGRPIAEISKDSPS 525

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            R   S G +S   ++  T+  ++     
Sbjct: 526 AR--TSGGRQSHRRRESDTRSGRKTGRKP 552


>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
          Length = 604

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 266/565 (47%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 33  KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 92

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 93  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 148

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 149 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 208

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 209 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 268

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 269 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 328

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 329 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 388

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 389 LERFTGSPMQEVFMPSAKELAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 448

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P+EI        RD                     R  +   
Sbjct: 449 EELLAGLTLLAQGKKTFFPKEIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 508

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 509 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 568

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 569 PANLSPKVINHLKKVWVAGKKLNLT 593


>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457676|ref|ZP_03666149.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371138|ref|ZP_04987140.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 569

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 266/565 (47%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKELAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P+EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPKEIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|269956525|ref|YP_003326314.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305206|gb|ACZ30756.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 712

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 153/610 (25%), Positives = 267/610 (43%), Gaps = 51/610 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+++ G+   +++Q   +   L  +D+   AQTG+GKT AFGL L +++ A  
Sbjct: 56  LPATLEAAVADLGFTTPSAIQAQAIPALLGGRDITGVAQTGTGKTAAFGLPLLASVEAHR 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL + PTRELA+QV   +E   +    V  +   GG     ++R L++G 
Sbjct: 116 GT---RPTVQALVLTPTRELAMQVAEAIESFASHLPDVRVLSVYGGSPYVPQQRALRDGV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+   GL +   + +VLDEADEML +GF +D+E I   +P +R++ +F
Sbjct: 173 HVVVGTPGRVIDHLERGGLVLDDARFLVLDEADEMLRMGFAEDVEKIFSYAPTQRQVALF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A  +  D V + +A ++   + +     +V    +  A+  IL    A 
Sbjct: 233 SATMPPAIRAIADTHLNDPVEIAVARQSSTVASVHQGYAIVPFRHKVGALTRILATSDAD 292

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR++       L E       +SG+++Q+ER   ++ +R G   V +ATDVAA
Sbjct: 293 ASIVFTRTRSAAEEVGAALIEKGISAATISGDVAQKEREKIVERLRSGALDVLVATDVAA 352

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++    E  +HR GRTGRAGR G +V  +  + + + + +     V
Sbjct: 353 RGLDVDRIGLVVNFDIPREAEAYVHRIGRTGRAGRTGRAVSFVTPHERGKLKFIENTIKV 412

Query: 366 SVVWEPAPSVEAIRERDAQRIL----------------------------QDPLFLDSIQ 397
           S+     PS   +    A R+L                            ++   +D  +
Sbjct: 413 SLEEIDIPSPRDVSAHRAARLLDSAPARTQAGRLDLYKQLVRNLVTTGDGEEAGVVDPTK 472

Query: 398 -------------GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
                        GD+         +++ E+      R  R                  D
Sbjct: 473 AVDLAATLLALAVGDDGPRARAEQEEYEREQAEGRAARQARETRKHEIGDRGARGDRFGD 532

Query: 445 RFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAI 502
           R R  +R    +            + + ++VG K       ++  +    G+    +G I
Sbjct: 533 RDRRPARDGDDRSHTRGIRRPAAGTRYRVAVGHKDGVNPGGIVGAITGEGGLTGADVGKI 592

Query: 503 RVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
            +    + V+++A      +D L R     + ++L    G     R Y       +  + 
Sbjct: 593 DIFGSFSLVDITAPLDGAQLDRLSRARVAGRALRLTVDRGAPEGTRSYDRPARAERFDRS 652

Query: 559 GATKRFKRFK 568
               R  R++
Sbjct: 653 DRPVRSDRYE 662


>gi|59713567|ref|YP_206342.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481815|gb|AAW87454.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 634

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 155/540 (28%), Positives = 261/540 (48%), Gaps = 26/540 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL + G+V  T +Q A +   L  +D L  AQTG+GKT AF L L + +  + 
Sbjct: 13  LDESILSALDDMGFVAPTPIQAASIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLKQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HN------PQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ D +    LN+  +   +LDEADEML +GF DD+ +IL+ +P   + ++F
Sbjct: 127 HIIVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPDTAQRILF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y ++  RV++A  N     ++    +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLREPARVDVAGTNHTVDKVEQNFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q +R   +  +++G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSQRERTVDNIKNGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQMRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRE----RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           ++     P  + + E      A  +  D  F+      +         + D   IAA  L
Sbjct: 367 TMEEIQLPHRDQVAECRLAALAAELQADKEFVALDAFTDLINKLQETLEIDATTIAAMLL 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDS-------------RAFKVGGGSRDNFKGSSW 468
           +  + G        P  +++  +R ++                  + G   + N      
Sbjct: 427 K-RQQGKRPLFYKGPDPMIAAMERAKNRRSDRGERGERGGRGDRPERGERRQYNNDDFDT 485

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRTVKL 527
           + L VG +Q  + + ++  L    G  + SIGAI++ P  T+V++      D+  +  KL
Sbjct: 486 YQLEVGREQGVQVKDIVGALANELGFTKGSIGAIKLAPGHTYVQLPKKMSADVAGKLKKL 545


>gi|332885949|gb|EGK06193.1| hypothetical protein HMPREF9456_00067 [Dysgonomonas mossii DSM
           22836]
          Length = 608

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 168/600 (28%), Positives = 275/600 (45%), Gaps = 41/600 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L E  DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAANIRKAIEEMGYENPMPVQEEVIPYLLGETNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +  +       + P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKIDIKQ------NVPQALILCPTRELCLQIAGDLSDYSKYIDNLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G  I+V TPGRL D I  + + +S++K VVLDE+DEML++GF + I+ IL   
Sbjct: 115 QIKSLKRGVQIIVATPGRLIDLINRRTVELSNVKYVVLDESDEMLNMGFMESIDEILSKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R ML+FSAT+   I  + K Y ++   + I  +N   + + +   LV   D+  A+ 
Sbjct: 175 PDERLMLLFSATMPKEIAKITKKYMQNPKEITIGRKNEGSNSVKHVYYLVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     I+FC TR         L +  +   +L G+LSQ +R   +Q  R    +
Sbjct: 235 RIADYYPNIYGIIFCRTRRETQEIADKLIQDGYNADSLHGDLSQAQRDYVMQKFRIKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGTSIAIIHVKEKGKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV---------L 407
             + +  N        PS EAI E+    ++     ++ ++ +E ++ ++          
Sbjct: 355 REIEKIINKKFEQGAIPSGEAICEKQLFSLVD---RIEKVKVNEDEISNILPSVYRKLDW 411

Query: 408 LAKHDPEK--IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR---------AFKVG 456
           L K D  K  +A  F R+      A E  +P    S  D+     +              
Sbjct: 412 LEKEDIIKRVVALEFNRLIDYYRDAQEIESPSERSSRDDKSFPKRKDRDRSDRSDRSDRS 471

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            G R   +G S   ++VG         LM ++       + +IG I +  + +F EV   
Sbjct: 472 SGGRSAERGYSRLFINVGRTDNVNPATLMGLVNDYVP-EKVNIGRIDIMQNFSFFEVPEK 530

Query: 517 GVDLLRRTV----KLDKGIQLKYLGGEKPDFRGYKSSGFKSKN---SQDGATKRFKRFKG 569
               + +++    +  + I ++   G        +      KN     D  T++   +  
Sbjct: 531 DAQKVIKSMSKQEQNGRRISVEVAQGGGGGNAKDRGGDRGRKNFSTRSDIGTRKSSDYNS 590


>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
          Length = 569

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 154/566 (27%), Positives = 266/566 (46%), Gaps = 36/566 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLKY 535
            A+     ++ L++     K + L  
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLTV 568


>gi|237742838|ref|ZP_04573319.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229430486|gb|EEO40698.1| ATP-dependent RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 528

 Score =  279 bits (714), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 157/554 (28%), Positives = 258/554 (46%), Gaps = 38/554 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + I +  I    V    +FV V     +++      ++      
Sbjct: 461 KDGMTPKKLVEFIIKKAKIKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR------ 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 -KGKKPLIEKAKSK 527


>gi|118497286|ref|YP_898336.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. novicida U112]
 gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
           U112]
 gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
           subsp. novicida FTE]
          Length = 569

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 154/566 (27%), Positives = 265/566 (46%), Gaps = 36/566 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 ECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLKY 535
            A+     ++ L++     K + L  
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLTV 568


>gi|87302313|ref|ZP_01085138.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
 gi|87283238|gb|EAQ75194.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 5701]
          Length = 645

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 154/554 (27%), Positives = 271/554 (48%), Gaps = 34/554 (6%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I  A+++ GY + + +Q+A +   +  +D++  AQTG+GKT AF L L + L  +    
Sbjct: 95  EILAAVADCGYSDPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLARLDPQQ--- 151

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIV 128
                P  L + PTRELA+QV        AK   V  +   GG     +   L+ G  IV
Sbjct: 152 ---RTPQVLVLTPTRELALQVAEAFNGYAAKLPQVRVLPIYGGADFRDQIVRLKRGVQIV 208

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ DH+R   L++S L+ +VLDEADEML +GF DD+E++L+  P++R++++FSAT
Sbjct: 209 VGTPGRVMDHMRQGTLDLSGLRCLVLDEADEMLRMGFIDDVEWVLEQLPQQRQVVLFSAT 268

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  L++ Y ++   V I  +  ++S I  R ++V  + +  A+  +L    ++  I
Sbjct: 269 MPSEIRRLSRKYLQNPAEVTIQQKGAENSTIRQRHLVVHGAQKLEALTRVLEAESSEGVI 328

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+A     ++ L +  + V  L+G++ Q +R   ++ +R G+  V +ATDVAARG+
Sbjct: 329 IFARTKAITLTVSEALEQQGYDVAVLNGDVPQNQRERTVERLRSGQVNVLVATDVAARGL 388

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + LVI+ ++  + E  +HR GRTGRAGR+G ++  +    +R    L R    ++ 
Sbjct: 389 DVDRITLVINYDIPFDSEAYVHRIGRTGRAGRQGDAILFLTPRERRFLGGLERAVGKAIT 448

Query: 369 WEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMV-DVLLAKHDPEKIAAG------- 419
               P+   I +    R+ +    L  + + DE+++     + +    +I+A        
Sbjct: 449 PMEVPTNADINQSRLDRLRERVTALVGTPRSDEQELALLSEILQRVGSEISATPEQLALA 508

Query: 420 ----------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG----GSRDNFKG 465
                      L         P            DR  D     + GG     S      
Sbjct: 509 ALQLAVGDRPLLVQGAETWRQPTPSRERQRSGDDDRRGDRRSPSRTGGSRLDASTPPDAD 568

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
              F + VG + + +   ++  +   +G+N +SIG I++    + V++      D  + L
Sbjct: 569 MERFRIEVGWQDRVKPGNIVGAIANEAGLNGRSIGRIQIFDTHSTVDLPSGMPEDVFNAL 628

Query: 522 RRTVKLDKGIQLKY 535
           RR   ++K +Q+  
Sbjct: 629 RRLRVMNKELQITR 642


>gi|325105194|ref|YP_004274848.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324974042|gb|ADY53026.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 608

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 155/565 (27%), Positives = 267/565 (47%), Gaps = 22/565 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F  +     I  A++E G+ N T +QE+ +   L    D +  AQTG+GKT AFGL 
Sbjct: 1   MNPFNELGIRHDIVNAITELGFTNPTPIQESAIPVLLSGSNDFVGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +          + P AL + PTREL +Q+  +L+        V  V   GG ++  
Sbjct: 61  LLELIDNTK------NHPQALILCPTRELCLQISNDLKNFSKNLKNVNVVAVYGGANIVN 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+++ G  IVV TPGR+ D I  K ++ S++  VVLDEADEML++GF+DDI  IL ++
Sbjct: 115 QLREIKRGVQIVVATPGRMLDIINRKAIDFSNVNYVVLDEADEMLNMGFQDDINDILSTT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  ++  +FSAT+   +  +A+NY  +   + +  +N  +++I++   +V   D+  A  
Sbjct: 175 PDTKKTWLFSATMPKEVRRIAENYMTNPHELTVGKQNSGNANIEHEYYIVKARDKYAAFK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ ++     IVFC T+       + L +  +   +L G+LSQQ+R   ++  R+   +
Sbjct: 235 RIVDFNPDIFGIVFCRTKIETQEIAESLVKDGYNADSLHGDLSQQQRDKVMKRYREKSLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ ++  VI+  L    EN  HRSGRT RAG+ G+S+ +I      + 
Sbjct: 295 LLIATDVAARGIDVNNVTHVINYSLPDEIENYTHRSGRTARAGKTGVSIAIINSREIHKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++ +           P+   + E+    +++   D    D         +         
Sbjct: 355 RQIEKVIGKQFTKAEIPTGFDVVEKQLFSLVKRVHDVEVNDEQIEQYLPRIMDDFKDLST 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +   F+ +    L    +  P    S     R   R  +      +   G S   +++
Sbjct: 415 EDVIKRFVSLEFNMLLDYYKNAPDLNASE---ERGRERGERGERRGGEGRNGYSRLFINL 471

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK--GI 531
           GS        L+  +C ++GI+ ++IG I ++   +F EV  D    +  + K     G 
Sbjct: 472 GSVDDFTRGDLLGYICNNTGISGKAIGRIDMKGVFSFFEVEEDKTQQVIDSFKTVDFHGR 531

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNS 556
            ++     +P     +  G + ++S
Sbjct: 532 SVRIEVSGEPA----RGGGERRRSS 552


>gi|150401787|ref|YP_001325553.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           aeolicus Nankai-3]
 gi|150014490|gb|ABR56941.1| DEAD/DEAH box helicase domain protein [Methanococcus aeolicus
           Nankai-3]
          Length = 529

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 158/551 (28%), Positives = 263/551 (47%), Gaps = 30/551 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F  +   +   EAL ++G+ + T +Q+  +   L    DV+  AQTG+GKT AFGL 
Sbjct: 3   MTEFLELGLCENTVEALEKKGFKHPTPIQKKAIPMLLDGDYDVVGQAQTGTGKTAAFGLP 62

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L   +          A+ + PTRELA+QV  EL  L     + +    GG  +  +
Sbjct: 63  IIEKLENTDKEV------QAIILTPTRELALQVSDELNSLRGSKNLKIVAMYGGQPIQEQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G ++VVGTPGR+ DH++   L +  +K  VLDEADEMLD+GF DDIE IL  + 
Sbjct: 117 IRQLKKGVNVVVGTPGRIMDHLKRGTLRLHTIKYFVLDEADEMLDMGFIDDIEDILRYTN 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ML+FSAT+   I  LAK Y      +++ SEN     ++     V  SD+  A+  
Sbjct: 177 PDKKMLLFSATLPRRIMGLAKRYMGKYKVISVKSENLTTDMVEQVYYEVRSSDKFEALCR 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +     IVFC TRA V+     L+   +    L G+++Q +R   L   +  R ++
Sbjct: 237 VIDINKEFYGIVFCKTRAEVNDIANKLSAKGYFAEGLHGDIAQNQREKILNRFKAKRTKI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  V++ ++  NPE  +HR GRTGRAG++G ++  +  +  RR +
Sbjct: 297 LVATDVAARGIDVTDLTHVVNYDIPQNPEAYVHRIGRTGRAGKRGTAITFVQPDEFRRLK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAKHDPE 414
            + R A   +  +  PS+E I+E     ++      +  +  +G       +L    DP+
Sbjct: 357 DIKRTAKTEIAKKDVPSIEEIKEVKKTAVMDKIYNIIEAEDCEGYLDLAEGLLENNEDPK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            + A  L+                     D         K     ++   G +   ++ G
Sbjct: 417 TVVASLLKHAF-----------------HDELNKKYGKMKQVRNVKEVKSGQNRLFVAQG 459

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +     + L+  +   +G+  + I  + V  +  ++ VS+   D + R + ++     K
Sbjct: 460 KRDGMNPKKLVDYIEEETGVRSRFIDDVTVLENFAYITVSSRDADKIIRALGIN-PRNGK 518

Query: 535 YLGGEKPDFRG 545
            +  +    RG
Sbjct: 519 PMAEKAKQRRG 529


>gi|225626665|ref|ZP_03784704.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|254709276|ref|ZP_05171087.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           B2/94]
 gi|256030799|ref|ZP_05444413.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella pinnipedialis
           M292/94/1]
 gi|256158820|ref|ZP_05456681.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti M490/95/1]
 gi|256254205|ref|ZP_05459741.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti B1/94]
 gi|260169703|ref|ZP_05756514.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella sp. F5/99]
 gi|261221354|ref|ZP_05935635.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261316783|ref|ZP_05955980.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261759240|ref|ZP_06002949.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265987854|ref|ZP_06100411.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|265997314|ref|ZP_06109871.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225618322|gb|EEH15365.1| DEAD-box ATP-dependent RNA helicase ydbR [Brucella ceti str. Cudo]
 gi|260919938|gb|EEX86591.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261296006|gb|EEX99502.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261739224|gb|EEY27220.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262551782|gb|EEZ07772.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|264660051|gb|EEZ30312.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 575

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 246/549 (44%), Positives = 347/549 (63%), Gaps = 36/549 (6%)

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +AFGLA+A+T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG
Sbjct: 1   MAFGLAMANTILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGG 60

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  ERR L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EF
Sbjct: 61  MDIRTERRALERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEF 120

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL  +P+ RR LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +R
Sbjct: 121 ILGEAPEDRRTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHER 180

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+AI+N L Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MR
Sbjct: 181 DHAIINTLLYYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMR 240

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DGRARVC+ATDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P +
Sbjct: 241 DGRARVCVATDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFS 300

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R AERL   A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++
Sbjct: 301 RRRSAERLLHMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQELLKALAERY 360

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG------------- 458
            PE+IA+ FL    A   A EE++   +     +     R  K                 
Sbjct: 361 TPEQIASAFLNREVASYPAAEEVSDAPVHPVGGKKPRSDRFEKGDRYERGERRERGEPGE 420

Query: 459 --SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
              R+      WFS+S G K +A+ +WL+P++C++  ++++ +G+I++  + T  E++A 
Sbjct: 421 RFDRNARFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEIAAS 480

Query: 517 GVDLLRRTVKLDKGIQLKYL-------------------GGEKPDFRGYKSSGFKSKNSQ 557
             D  R++V  ++G   K L                   G  KP    +K  GF+  +  
Sbjct: 481 KADEFRQSV-AERGTGEKSLVIRTAVAGAGGDAAARESRGSFKPRSDKFKEGGFRDGHKS 539

Query: 558 DGATKRFKR 566
           D   + F R
Sbjct: 540 D-KPRDFSR 547


>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668618|ref|ZP_04756196.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 581

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 152/577 (26%), Positives = 263/577 (45%), Gaps = 48/577 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +  E    S   AP  L +APTRELA+QV  + +        +  A   GG     + 
Sbjct: 67  NNMDLE----SRDRAPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD+ ++L     
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRYVLSHVSD 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 ECQRLLFSATIPTDIADIIQEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ V 
Sbjct: 243 LEVEETDGVIIFVKTKTSTIEVADNLKALGYRVAAINGDMQQSQREYIVDQFRSAKSDVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G+S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDSDTYVHRIGRTGRAGREGISISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA--KHDP 413
           L R     +     PS + + +         +   L  +    + K+++  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRIDHFKTRIASALDKNKSLDNYKEIITSIRDELELDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRF-----RDDSRAFKVGGGSRDNFKGS- 466
           +++ A    + +      P EI        RDR      RD  R  +       + + S 
Sbjct: 423 DELLAVLTLLAQGKKSFFPREIQARDDRPQRDRNLRGNSRDGGRNDRFERRGDRSDRNSR 482

Query: 467 -------------------------SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGA 501
                                    + + L VG     + R ++  +     I+ + I  
Sbjct: 483 FDRSDKFDRSDRSDRKPRRAVNIDLTTYKLEVGRDNDVQPRNIVGAIANEGNIDSKHICN 542

Query: 502 IRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLK 534
           I +Q D T V++ A+     +  LR      K + L 
Sbjct: 543 ISIQKDHTLVDLPANLSPKVISHLRNVWVAGKKLNLT 579


>gi|289208228|ref|YP_003460294.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943859|gb|ADC71558.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 627

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 272/587 (46%), Gaps = 27/587 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  AL + G+   T VQ A +   L   DVL  AQTG+GKT AFGL L  ++    
Sbjct: 12  LSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFGLPLIDSIDPAQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        AL +APTRELA QV   LE +  +  G+ +    GG  +  + R L++GA
Sbjct: 72  RRV------QALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRALRDGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L +  L+ VVLDEADEML +GF ++IE+IL+ +P +R+  +F
Sbjct: 126 QVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAERQTTLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA- 244
           SAT+   I  +A  + ++   + I + N   +DID    LV    +  A+  ++      
Sbjct: 186 SATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIEVEAGL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+A+ +   + L     Q   L+G++ Q ER   +  +RDGR  V +ATDVA
Sbjct: 246 DAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  V + +   + E  +HR GRTGRAGRKG ++  +    +R    + R   
Sbjct: 306 ARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDIERLTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDS----IQGDEKKMVDVLLAKHDPEKIA 417
             V  +  P   A+  R  +R+   LQ  L  ++        ++ + +  + + D  +  
Sbjct: 366 KPVREQKVPDRAAVIARREERLAERLQAELAGEASPQLDALLDRLLANGQMGERDLARAL 425

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRF------RDDSRAFKVGGGSRDNFK-GSSWFS 470
                        P    PV+  + R         R+  RA +   G     +     + 
Sbjct: 426 LALATQGTPLDGTPNAHDPVTAAASRPERDSHRADRNRDRAPRPSRGKDRGPEADMVRYY 485

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + VG         ++  L    G+N + IG I +Q D + V++ A      V  L     
Sbjct: 486 MPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHSHVDLPAALDEAAVRRLGNIHV 545

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            ++ +++        D R  +     ++  +       KR   A  N
Sbjct: 546 ANRRLEMAR-SVPTRDSRATERHAPAARKPRGPGKPAAKRRGPAPAN 591


>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
 gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
 gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 569

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 154/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L     
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSD 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 ECQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S    T  L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVTDNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|256422110|ref|YP_003122763.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037018|gb|ACU60562.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 581

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 158/571 (27%), Positives = 275/571 (48%), Gaps = 22/571 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  FE   + + I + + + G++  T +QE  +   L   +D +  AQTG+GKT AFGL 
Sbjct: 1   MTTFETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHR 116
           L   +  +         P  L + PTREL +Q+  +L+      G V +    GG S+ +
Sbjct: 61  LLQQIDIKQ------RHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G HIVV TPGRL D I  K +N ++++ VVLDEADEML++GF++DI  IL ++
Sbjct: 115 QLRDLKRGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   +  +A+ Y  D   + + ++N  +++I++   +V   ++  A+ 
Sbjct: 175 PEEKTTWLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+F  T+       + L    +   AL G+L+QQ+R   ++  R+   +
Sbjct: 235 RIVDYNPEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ ++  VI+ EL  + EN  HRSGRT RAG+ G+S+ +I      + 
Sbjct: 295 VLVATDVAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---HDP 413
            ++ R           P   A+ E+    ++     +   +   +  ++ +  +      
Sbjct: 355 RQIERVIGKKFTKVDVPDGFAVCEKQLFGLVHKVHNVVVNEEQIEPYLERIFEEFASMTK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E+I   F  +         +  P       D    + R    GG  R +    +   +++
Sbjct: 415 EEIIKRFASLEFNQFLEYYQDAP-------DLNVKEERRSAEGGERRSSNGKFTRLFINL 467

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGI 531
           GS        ++  LC +SG+    IG I ++   +F EV  D V+  ++T K     G 
Sbjct: 468 GSVDDFTRGDMLRYLCDTSGVRGNKIGRIDLKGVYSFFEVENDVVEKFQQTFKKAEYNGR 527

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
            ++    +  D R     G   +    G  +
Sbjct: 528 SVRIEMSQDGDKRRSGGGGRPPREGGSGGRR 558


>gi|256028357|ref|ZP_05442191.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289766283|ref|ZP_06525661.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
 gi|289717838|gb|EFD81850.1| ATP-dependent RNA helicase [Fusobacterium sp. D11]
          Length = 528

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 150/534 (28%), Positives = 253/534 (47%), Gaps = 31/534 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F ++   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPEEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 VVASLLKLSYSDVLDENNYNEISPVKMED-------------------TGKARLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           K     + L+  + + + + +  I    V    +FV V     +++      ++
Sbjct: 461 KDGMTPKKLVEFIVKKAKVKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR 514


>gi|237743040|ref|ZP_04573521.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
 gi|229433600|gb|EEO43812.1| ATP-dependent RNA helicase [Fusobacterium sp. 7_1]
          Length = 528

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 154/543 (28%), Positives = 255/543 (46%), Gaps = 35/543 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F ++   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRDLGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFIEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKARLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGI 531
           K     + L+  + + + + +  I    V    +FV V         ++  +  K  K +
Sbjct: 461 KDGMTPKKLVEFIVKKARVKQSYIKNAEVYEGFSFVSVPFKEAEIIVEVFAKNRKGKKPL 520

Query: 532 QLK 534
             K
Sbjct: 521 IEK 523


>gi|313148046|ref|ZP_07810239.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136813|gb|EFR54173.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 647

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 170/587 (28%), Positives = 276/587 (47%), Gaps = 27/587 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 12  MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 71

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 72  LIQKINVKN------RIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF + I  IL   
Sbjct: 126 QIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTESINAILADV 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   S++ +    V   D+  A+ 
Sbjct: 186 PQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTSNVKHVVYTVHAKDKYAALK 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     IVFC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 246 RIVDYYPQIYGIVFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 306 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 365

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +      L  
Sbjct: 366 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFMPEIYRKLEW 422

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  V    R     ++ + G   R    G +   
Sbjct: 423 LSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAVKS-RDGKSGRQAEPGFTRLF 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +  + +F EV       + + +     
Sbjct: 482 INLGKMDNFFPHELITLLNNNTR-GRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW 540

Query: 528 -DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + + ++  G E P  R  +  G +++ S  G   R        K+
Sbjct: 541 NGRKVTVEVAGEEAPTER--RGRGKRNEGSDKGGKGRNTAASADRKD 585


>gi|270294991|ref|ZP_06201192.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274238|gb|EFA20099.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 650

 Score =  279 bits (713), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 167/590 (28%), Positives = 274/590 (46%), Gaps = 27/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L      T G+ V    GG S+  
Sbjct: 61  LIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFMTDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              E +    +              +    +  S R     +         SR    G +
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRSSRKAEPGFT 471

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         L+ +L  ++   R  +G I +    +F EV       + + +  
Sbjct: 472 RLFINLGKMDNFFPNELISLLNNNTR-GRVELGRIDLMQKFSFFEVEEKEATNVVKALNR 530

Query: 528 ----DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                + + ++  G E  +    K  G    + +     + + +K   K 
Sbjct: 531 ASWNGRKVSVEVAGDEGKEAPRGKRPGTAGSHGKKEFDSKKRSYKEDGKR 580


>gi|34763211|ref|ZP_00144175.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256846171|ref|ZP_05551629.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
 gi|27887121|gb|EAA24228.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|256719730|gb|EEU33285.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_36A2]
          Length = 528

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 156/554 (28%), Positives = 258/554 (46%), Gaps = 38/554 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AKN+ K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKNHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + + +  I    V    +FV V     +++      ++      
Sbjct: 461 KDGMTPKKLVEFIVKKAKVKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAKNR------ 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 -KGKKPLIEKAKSK 527


>gi|313159432|gb|EFR58795.1| putative DEAD-box ATP-dependent RNA helicase CshA [Alistipes sp.
           HGB5]
          Length = 653

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 156/573 (27%), Positives = 275/573 (47%), Gaps = 38/573 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + +  A+  +G+   T++Q+  +   L +  D++  +QTG+GKT A+GL +  +L   
Sbjct: 12  LSEQMLTAVRAKGFETPTAIQKLTIPHLLTKTNDIIAQSQTGTGKTAAYGLPILQSL--- 68

Query: 66  NDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                PA  P  A+ + PTRELA+Q   EL     +  + +    GG ++  + R L  G
Sbjct: 69  ----EPARGPVQAIILVPTRELALQAAEELLSYNREKRLSITAIYGGAAMSEQLRRLAKG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ DHIR   L + +++ +VLDEADEML++GF +D+E I+  + ++RR+L+
Sbjct: 125 VDIVVGTPGRVRDHIRRGTLKLENVRYLVLDEADEMLNMGFVEDVEEIMSHTSEERRVLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y +D   V + ++       +     V  +D+ +A+  I+     
Sbjct: 185 FSATMPERIIRLSKTYMRDTEIVRVENKQLTTDLTEQIYFEVREADKFDALTRIIDVEPE 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+         LA   +    L G++SQ +R   L+  RD    + +ATDVA
Sbjct: 245 FYGIIFARTKIGADETVSRLAARGYAAEVLHGDVSQAQREKILRKFRDRSVNILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+  L  + E+ +HR GRTGRAG++G ++  +  +  R    L R+  
Sbjct: 305 ARGIDVGNLTHVINYSLPQDSESYVHRIGRTGRAGKQGTAITFVSPSEFRGLNNLMRDIK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           V +  E  PS + I E    +I  +   +  +      ++  + LLA++ P+      LR
Sbjct: 365 VEIKRETLPSPQDIVEMKRLKIKDEMQEIVENESYDGYREFAEELLAEYTPDVALGALLR 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +             +   S                    + KG++   L+VG +    AR
Sbjct: 425 LAFRSELDQSNYPEIRSFS-------------------VDRKGTARLFLAVGRRDGYTAR 465

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLRRTVKLDKGIQ-LKYLGGEK 540
            L+ ML    G+  + I  +++  + +FV V   D  +++R+  +L++G + +  +    
Sbjct: 466 KLVDMLKFKCGLRDKYINDVQISDNFSFVSVPFHDAEEIVRKLNRLNRGRRPIAEI---- 521

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              R  + +  +       A    + +  A K 
Sbjct: 522 --ARDGEEAAARKPRRAKTADAGGEEYAPAPKK 552


>gi|254497847|ref|ZP_05110613.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254352925|gb|EET11694.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 584

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/578 (25%), Positives = 252/578 (43%), Gaps = 52/578 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I +AL +  +   + +Q   +   L  +D +  AQTG+GKT AF L +   +   
Sbjct: 12  NFSDAINQALEDMKFTTPSPIQTQTIPLFLEGRDAIALAQTGTGKTAAFALPILQKITPN 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL +APTRELA+QV  + E     + G  VA   GG    R+ + L+ G
Sbjct: 72  GQ------GTQALILAPTRELAIQVAEQFELLSARQHGTKVATLCGGQEYGRQLKQLRAG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DHI    L +S+L+  +LDEADEML +GF +DIE I+   P+++++ +
Sbjct: 126 AQIVVGTPGRILDHIEKGTLQLSNLRTFILDEADEMLRMGFIEDIETIMAKLPEQKQIGL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +A  Y  +   + I SE      I+ R +  +   + +A+V +L     
Sbjct: 186 FSATMPHRIRQIANTYLNNPASIEIRSETATVKSIEQRFLFASGHQKPDALVRVLAVEEY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T++S     ++L +   + +A+ G+++Q  R   +   R G   + +ATDVA
Sbjct: 246 QGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L  + E  +HR GRTGRAGR G+++  +     R    + R   
Sbjct: 306 ARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKESRLISSVERHTR 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKH--DPEKIAA- 418
             +     P+   I+    QR + +    L  ++I    +K+V+  + +H      +AA 
Sbjct: 366 QRITKVNVPNDHMIQVARQQRFMANITARLEHENIHS-YRKIVEEYIKEHEVSAVDVAAT 424

Query: 419 -GFLRIHRAGLCAPEEITPVSLVSGRDRFRD---------------------DSRAFKVG 456
              L          E   P      R+   D                          +  
Sbjct: 425 LALLLHKDMPWQQKEHTLPKPARPEREGRTDCGSKFERSSSRSDERRSFGDKKGFGERKS 484

Query: 457 GGSRDNFKGSSW------------FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
            G      G               F + VG     +   ++  +   +G+  + I  +++
Sbjct: 485 FGDDRKNFGDDRKKFNGESSEQDLFRIDVGKVHGVKPGNIVGAIANEAGLQSRHITGLKI 544

Query: 505 QPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGG 538
             D + V +      + +  L +     + + L  +G 
Sbjct: 545 HDDHSTVRLPKGMSQEVISDLTKAWVCGRQLNLTLVGS 582


>gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
          Length = 570

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/566 (26%), Positives = 262/566 (46%), Gaps = 37/566 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + +   GY   T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLSQDIVDTVINLGYETPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +       S   +P  L +APTRELA+QV  + +        +  A   GG     + 
Sbjct: 67  NNIDLR----SRDKSPQVLVLAPTRELAIQVAEQFQAFAKNIPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD+ F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVRFVLSHISE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R+ ++ + 
Sbjct: 243 LEIEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRNAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L R     +     PS + + +   +    R++       S+   ++ +  +        
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARVISGLDKNKSLDKYKEIITSIRDELELDS 422

Query: 415 KIAAGFLRIHRAG--------LCAPEEITPVSLVSGRD---------RFRDDSRAFKVGG 457
           +     L +   G        + A EE       + RD         R   D+RA +   
Sbjct: 423 EELLAVLTLLAQGKKTFFPREIQAKEEKPTRDNRNSRDGRKNERFERRNDQDNRAKRFDK 482

Query: 458 GSRDNFK-----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
             R   +       + + L VG     + R ++  +     I+ + I  I +Q D T V+
Sbjct: 483 ADRKPRRAVVNIDLTTYKLDVGRDNDVQPRNIVGAIANEGNIDSKHICNISIQKDYTLVD 542

Query: 513 VSAD----GVDLLRRTVKLDKGIQLK 534
           + A+     ++ L++     K + L 
Sbjct: 543 LPANLSPKVINHLKKVWVAGKKLNLT 568


>gi|269795126|ref|YP_003314581.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269097311|gb|ACZ21747.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 614

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 156/587 (26%), Positives = 273/587 (46%), Gaps = 32/587 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  +  A+ + G+   +++QE  +   L   D+   AQTG+GKT AFGL + +
Sbjct: 31  TFADLGLPAELLSAVLDLGFTVPSTIQEKAIPALLAGNDITGVAQTGTGKTAAFGLPMLA 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            +  E  R        AL +APTRELA+QV   +E        +  V   GG     + R
Sbjct: 91  AVDPELRR------TQALVLAPTRELAMQVAEAIETFAKHLPGIEVVPVYGGSPYPPQAR 144

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA IVVGTPGR+ DH+    L +  ++ +VLDEADEML +GF +D+E I  ++P +
Sbjct: 145 ALSRGAQIVVGTPGRVIDHLERGTLKLGDIRFLVLDEADEMLRMGFAEDVEKIFGAAPTE 204

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ P I  +A+++ +  V + ++ ++   + +  +  +V    +  ++  +L
Sbjct: 205 RQVALFSATMPPQIRRVAQHHMRQPVEIAVSRQSSTVTSVTQQYAVVPFRHKVGSLTRVL 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A  AIVFC TR +       L E       +SG+++Q++R   ++ +R G   V +
Sbjct: 265 ATSDADAAIVFCRTRGAAEEVGSALIERGISAATISGDVAQKDREKIVERLRAGALDVLV 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++   PE  +HR GRTGRAGR G+++  +  N + R +++
Sbjct: 325 ATDVAARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRTGVALSFVTPNERGRLKQI 384

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL------QDPLFLDSIQGDEKKMVDVLLAKHDP 413
            R     +V    PS   +       +L      +D   L       +  +D        
Sbjct: 385 ERTIRQQLVEIEIPSPADVSAHKVATLLGRVDARRDAGRLSMYTDLVRTHLDTHGTDPAE 444

Query: 414 EKIAAGFLRIHRAG-----------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                  L +   G               E              R+     +   G R  
Sbjct: 445 LAAILAALAVGDDGPQAREEEAAFEAQRAEARDARKRRDDDRAPRERRDNDRPSRGVRRE 504

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGV 518
             G + + LSVG    A+   ++  L    G++ + +G I + P  + V++SA    + +
Sbjct: 505 STG-TRYRLSVGHTHGAQPSGIVGALTNEGGLSGKDLGKIDIFPSFSLVDISAPLDSETI 563

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           D + R     K +++K   G  P  R  ++ G  +   ++   ++ +
Sbjct: 564 DKISRARVAGKALRIKLDDGPAPT-RTPRAGGAPAGRREERFDRKPR 609


>gi|329960668|ref|ZP_08299011.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328532541|gb|EGF59335.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 648

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 169/588 (28%), Positives = 279/588 (47%), Gaps = 32/588 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSAEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFCVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYNPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEIGDFMPDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              E +    +       L    +   + + +G +R   D    +   G R    G +  
Sbjct: 412 LSKEDLIKRMVSHEFNRFLEYYRDREEIEIANGSERSGKDGVRRERRDGGRQAQPGYTRL 471

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL-- 527
            +++G         L+ +L +++   R  +G I + P  +F EV       + +++    
Sbjct: 472 FINLGKMDNFFPNELIGLLNKNTR-GRVELGRIDLMPKFSFFEVEEKEAQNVMKSLNRAN 530

Query: 528 --DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              + I ++  G E  +         +    ++G     K F G  ++
Sbjct: 531 WNGRKIAVEVAGEESKET-------SRGSRREEGGNYGRKEFGGKKRS 571


>gi|317504343|ref|ZP_07962329.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315664534|gb|EFV04215.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 625

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 166/588 (28%), Positives = 277/588 (47%), Gaps = 24/588 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVNENIRRAIEELGFEHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   + A++       A  A+ ++PTREL VQ+  +L+       G+ +    GG  +  
Sbjct: 61  LLQKVNAQD------RATQAIVLSPTRELCVQIADDLKDFSKYIDGMHIVPVYGGADIRP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +++G  ++V TPGRL D I    + +  +  +VLDEADEML++GF D I  I +  
Sbjct: 115 QIRAIKHGTQVIVATPGRLVDLINRGVMELEKVNNIVLDEADEMLNMGFSDSINAIFEQL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK+Y  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSREVEKVAKSYLHDYKEIVVGSRNEGAEHVNHIYYLVHSKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ +H    AI+FC T+A        L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDFHPRIFAIIFCRTKAETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHIKEKWKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
            ++ ++     +    P  E I ++   +++ D +  D  +         +       D 
Sbjct: 355 RQIEKQIGKDFIDGELPKSEEICKKQLFKVMDDIMKTDVDEDQIAPYMADIMRQFEYVDK 414

Query: 414 EKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN--FKGS 466
           E I    +     R       APE   PV+    R    + +   KV  G R +   +G 
Sbjct: 415 EDIIKKMVTVTFGRFLDYYQHAPEIEKPVAGKGSRSERGERNTRGKVSNGQRQHVAEEGF 474

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
               +++G         +M  L +     RQ +G I +    +++EV  D    + + + 
Sbjct: 475 RRLFINLGKSDGFYPGEIMQYLNKHVH-GRQEVGHIDLLQKFSYIEVPEDDAQKVMKALN 533

Query: 527 LD--KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
               KG +++    ++    G  +            T+  +R  G  +
Sbjct: 534 GTTYKGREVRCNDADE-TGHGRSNGRTGRGERGGKTTRTSRRDNGERQ 580


>gi|148977343|ref|ZP_01813957.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
 gi|145963456|gb|EDK28720.1| ATP-dependent RNA helicase DeaD [Vibrionales bacterium SWAT-3]
          Length = 646

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 158/551 (28%), Positives = 265/551 (48%), Gaps = 16/551 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL   G+V+ T +Q A +   L  +D L  AQTG+GKT AF L L + +    
Sbjct: 13  LNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAFSLPLLNKINLNQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L  GA
Sbjct: 73  HK------PQAIIMAPTRELAIQVAAEIKNLGRDIKGLKVIEIYGGASIVDQMRALSRGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L++      VLDEADEML +GF DD+ +IL+ +P+  + ++F
Sbjct: 127 HIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + T+   Y ++  +V++A  N     +     +V   ++D A+  +L      
Sbjct: 187 SATMPPMVKTIVDRYLRNPAKVDVAGTNHTVDKVAQNFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLAK---HDPEKIAAGFL 421
           ++     P  + +      ++  +     +S   +    +   L +    D   +AA  L
Sbjct: 367 TMEEIQLPLRDQVAAARVAKLGAELETEKESKALENFAGLITTLQESLDVDAATLAAMLL 426

Query: 422 RIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           +  +    L    E   ++ +      R + R  +  GG   N +    + L VG +Q  
Sbjct: 427 KRQQGKSPLFYIGEDPMIAAIERDKNRRKERRENRDNGGRDFNTQDWDTYQLQVGREQGV 486

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLKYLGG 538
           + + ++  L    G+ + SIGAI++    T+V++            KL K  I+ K  G 
Sbjct: 487 QVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNS--ETAGKLSKLRIRQKEAGA 544

Query: 539 EKPDFRGYKSS 549
              DF  ++  
Sbjct: 545 VVVDFNDFREP 555


>gi|91200410|emb|CAJ73457.1| strongly similar to ATP-dependent RNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 524

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 156/534 (29%), Positives = 256/534 (47%), Gaps = 30/534 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ FE++   +   + L E+GY   T +Q+  +   L   KD++  AQTG+GKT AFGL 
Sbjct: 1   MESFESLGLSESTLKVLKEKGYEEPTPIQQKTIPAILSGTKDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L  ++          AL + PTRELA+QV  EL  L  K  + +    G  S+  +
Sbjct: 61  VLELLPEKSKNV------QALVLTPTRELAIQVAEELNSLKGKKRLSIVPIYGRQSMELQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ DH++   L I  +  +VLDEADEML++GF DD+  I++++ 
Sbjct: 115 LRSLKKGIDIVVGTPGRVLDHLKRGTLKIGKISFLVLDEADEMLNMGFIDDVREIMENTG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++R L+FSAT+   I  +AKNY +D     + +     S  D     V  +D+  A+  
Sbjct: 175 HEKRTLLFSATMPFEIMQIAKNYMRDFDVQKVNAGQLTVSQTDQIYFEVFAADKFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        +VFC T+  V      L E  +   AL G++SQ  R   L   +  +  +
Sbjct: 235 IIDIEKDFYGLVFCRTKIDVDAVASHLIERGYDADALHGDISQSLREKILAKFKKRQINI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+ +L  VI+  L  +PE+ +HR GRTGRAG+ G+++  I     R+ +
Sbjct: 295 LIATDVAARGLDIHNLSHVINYSLPQDPESYVHRIGRTGRAGKGGIAITFITPEEYRKLQ 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + + A   +  E  P +E I      +I    + +   +      +M   L     PE 
Sbjct: 355 FIQKAAKTDIRKEKLPKIEDIIRTKKLKIKDHINEIVDLNAHNCYIEMAKELTEHKKPED 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I +  L+        P+E+     V   +              +  + KG +   ++ G 
Sbjct: 415 IISALLQYSF-----PDELNEKRYVEIEE--------------AVVDKKGKTRLFVTQGK 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           ++    + L+  +   S I  + I  +++    +FV +     ++L  + K  K
Sbjct: 456 QEGLTHKKLVTYIKDISNIASEKIRDVQILDKYSFVTLPFREAEILLTSFKRRK 509


>gi|332881684|ref|ZP_08449332.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332680323|gb|EGJ53272.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 679

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 162/586 (27%), Positives = 271/586 (46%), Gaps = 24/586 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYENPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +       +  +   AL ++PTREL +Q+  +LE        V  +   GG ++  
Sbjct: 61  VLQKVD------ATRNVTQALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G  ++V TPGRL D +     ++ H++ VVLDEADEML +GF + I+ IL   
Sbjct: 115 QIRTLRKGVQVIVATPGRLIDLMERGAASLEHVENVVLDEADEMLSMGFTESIDKILAGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+    L+FSAT+S  I  ++K Y ++A  + + S N     +++   +V   D+  A+ 
Sbjct: 175 PENHNTLLFSATMSREIERISKKYLREAKEIVVGSRNEGAETVNHVYYMVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC TR         L +  +   +L G+LSQQ+R   +Q  R  R +
Sbjct: 235 RIVDYYPKIYAIIFCRTRMETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ ++    + + 
Sbjct: 295 FLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
             + +      V    PS + I  +   +++ D   ++  + + ++    V   L   D 
Sbjct: 355 REIEKVIGKEFVKGEMPSGKEICAKQLYKVIDDIERVEVDEEEIEQFLPEVYRKLEWLDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    +              P          R +    K   G R   +G +   L++
Sbjct: 415 EDLIKRVVSREFGRFLQYYANAP---EISEPTGRGEKGDKKGKRGGRKPEEGYTRLFLNL 471

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDK 529
           G      A+ +M ++       +  IG I +    +F EV     D +   +       +
Sbjct: 472 GKVDGFYAKEVMKLVNDHVQ-GKVEIGRIDLMKSFSFFEVPDGEADRVLHGLSGVQVKGR 530

Query: 530 GIQLKYLGGEKP---DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            + ++   GE     + +  + SG   ++  D    R ++  G  K
Sbjct: 531 KVNVEVATGEAHEAGEGKSNRRSGRDGRSGGDAKGSRDRKKHGGGK 576


>gi|187931511|ref|YP_001891495.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 569

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIIDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QCQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGHDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|160888638|ref|ZP_02069641.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
 gi|156861952|gb|EDO55383.1| hypothetical protein BACUNI_01055 [Bacteroides uniformis ATCC 8492]
          Length = 618

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 167/590 (28%), Positives = 274/590 (46%), Gaps = 27/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L      T G+ V    GG S+  
Sbjct: 61  LIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFMTDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              E +    +              +    +  S R     +         SR    G +
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRSSRKAEPGFT 471

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         L+ +L  ++   R  +G I +    +F EV       + + +  
Sbjct: 472 RLFINLGKMDNFFPNELISLLNNNTR-GRVELGRIDLMQKFSFFEVEEKEATNVVKALNR 530

Query: 528 ----DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                + + ++  G E  +    K  G    + +     + + +K   K 
Sbjct: 531 ASWNGRKVSVEVAGDEGKEAPRGKRPGTAGSHGKKEFDSKKRSYKEDGKR 580


>gi|238783510|ref|ZP_04627532.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
 gi|238715565|gb|EEQ07555.1| DEAD/DEAH box helicase domain protein [Yersinia bercovieri ATCC
           43970]
          Length = 612

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 162/575 (28%), Positives = 258/575 (44%), Gaps = 52/575 (9%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AQTGSGKT AFGL L   + AE        AP  L +APTRELA+QV   L         
Sbjct: 2   AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55

Query: 104 VVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V  V   GG     + R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E I+   P + +  +FSAT+  AI  + + + KD   V I S      DI   
Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175

Query: 223 AV-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +    ++  A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L  ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDE 400
           G ++  +    +R  + + R   +++     P+ E + ER   +        L+S   D 
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGERRLAQFAAKVGQQLESSDLDL 355

Query: 401 KKMVDVLL---AKHDPEKIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFRDDS--- 450
            + +   L    + D E +AA  L++ +      L       P    + RD   +D    
Sbjct: 356 YRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGNDRGND 415

Query: 451 ------------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
                                +     R +      + + VG     E R ++  +    
Sbjct: 416 RGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEG 475

Query: 493 GINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
            I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R  + 
Sbjct: 476 DISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERP 535

Query: 549 S-----------GFKSKNSQDGATKRFKRFKGASK 572
           +                  +DGA    +R  G+ +
Sbjct: 536 AGGNGGERRGGPRSAGGERRDGAGAPPRRSFGSDR 570


>gi|317477978|ref|ZP_07937161.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316905892|gb|EFV27663.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 650

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 167/590 (28%), Positives = 273/590 (46%), Gaps = 27/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYEQPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L      T G+ V    GG S+  
Sbjct: 61  LIQKINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYTDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLATIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVAFCVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEEIADFMTDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE---EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              E +    +              +    +  S R     +         SR    G +
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRGRDEIETATGSERGARSGERGDRNDRRSSRKAEPGFT 471

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         L+ +L  ++   R  +G I +    +F EV       + + +  
Sbjct: 472 RLFINLGKMDNFFPNELISLLNNNTR-GRVELGRIDLMQKFSFFEVEEKEATNVVKALNR 530

Query: 528 ----DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                + + ++  G E  +    K  G      +     + + +K   K 
Sbjct: 531 ASWNGRKVSVEVAGDEGKEAPRGKRPGTAGSYGKKEFDSKKRSYKEDGKR 580


>gi|302344868|ref|YP_003813221.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
 gi|302149937|gb|ADK96199.1| putative ATP-dependent RNA helicase DeaD [Prevotella melaninogenica
           ATCC 25845]
          Length = 640

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 168/586 (28%), Positives = 273/586 (46%), Gaps = 36/586 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+SE G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       + +    A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 61  LLQRID------TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDT 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL   
Sbjct: 115 QIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + RE +   V    PS E I ++   + + D L  D  +       K ++      D 
Sbjct: 355 RNIEREISKDFVDGTLPSPEEICKKQLFKTMDDILKTDVDEDQIAPYMKDINRQFEYIDK 414

Query: 414 EK-----IAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSS 467
           E      ++A F R       A E   P S  +  D R            G R    G  
Sbjct: 415 EVVIKKIVSATFGRFLDYYKNAQEIEKPSSRSAREDSRGARGEGRGSRSRGPRKAESGYK 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         +M  + ++    +Q++G I +    +++EV       + +++  
Sbjct: 475 RLFINLGKADGFYPGEVMQFVNKNVH-GKQAVGHIDLLAKQSYIEVPEQDAQKVMQSL-- 531

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                         D   YK    +  ++++G   R    + A  N
Sbjct: 532 --------------DGATYKGRKVRCNDAEEGGHGRSSNSRSAGGN 563


>gi|20092752|ref|NP_618827.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
 gi|19918045|gb|AAM07307.1| ATP-dependent RNA helicase [Methanosarcina acetivorans C2A]
          Length = 555

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/572 (29%), Positives = 268/572 (46%), Gaps = 36/572 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +     +AL ++G+   T +QE ++   L+ + D++  AQTG+GKT AFG  +   +   
Sbjct: 12  LSDSTLKALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAFGAPIIEKI--- 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +    A+ + PTRELA+QV  EL  +     + V    GG S+ ++ R L++G 
Sbjct: 69  ---PEKSGYVQAIILTPTRELAIQVSEELNSIKGDKKLHVVPIYGGQSMTQQLRVLKSGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+  K L++ H+   VLDEADEML++GF DDI+ IL ++   +RML F
Sbjct: 126 DIVVGTPGRIIDHLERKSLDLEHIAYFVLDEADEMLNMGFIDDIKEILKATGPDKRMLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + K Y ++   V I  E       +     V  +D+  A+  I+      
Sbjct: 186 SATMPKPILGIVKKYMQNYEHVTIEKEELAAKLTEQIYFEVQENDKFEALSRIIDIEDEF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+    +  + L++  ++  AL G+LSQQER   L   R  +  V +ATDVAA
Sbjct: 246 YGLVFCRTKTDTGQLAQKLSDRGYEADALHGDLSQQEREKILNKFRKQKINVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  L  +PE+ +HR GRTGRAG++G ++  +     RR   + + +  
Sbjct: 306 RGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIKKTSKS 365

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P ++ + +    R+   L++ +  +   GD  +M + LL ++  EKI A  L+
Sbjct: 366 EMKKGRIPEIKDVIKAKRARVKAELEETIKTEEY-GDCLEMSERLLEEYPAEKILAALLK 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                       T +S  S                 S  + KG +   +++G        
Sbjct: 425 YTFKEKFDESMYTEISSPS-----------------SYVDRKGKTRLFIAMGKADGMSPE 467

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            L   +    G +   +    + P  +FV +     + L    K  +        G KP 
Sbjct: 468 KLSYFIQEELGDSELKVRDAEIFPHFSFVTLPFAQAEALLEIFKNKR-------RGRKPF 520

Query: 543 FR-GYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                KS G   K S +G +    R     +N
Sbjct: 521 VELAQKSKGRSLKGSNNGRSNGRPRNPSRPRN 552


>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 569

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 153/565 (27%), Positives = 265/565 (46%), Gaps = 36/565 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q I + + + GY N T +Q+  +   L  +DVL  AQTG+GKT AF L L 
Sbjct: 7   KDFSQLGLNQDIVDTVIKLGYENPTPIQQYAIPYILSGRDVLGQAQTGTGKTAAFALPLI 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRER 118
           + +    D  S   AP  L +APTRELA+QV  + E        +  A   GG     + 
Sbjct: 67  NNM----DLASRDRAPQVLVLAPTRELAIQVAEQFEAFAKNVPNLDVACIYGGQEYGSQI 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VVGT GR+ DHI    L + +L+A+VLDEADEML +GF DD++F+L    +
Sbjct: 123 RALKQGVKVVVGTTGRVMDHIEKGTLQLDNLRALVLDEADEMLRMGFIDDVKFVLSHVSE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSATI   I  + + Y ++  ++ + ++ +  + +  + +++    + +A+  +
Sbjct: 183 QSQRLLFSATIPTDIADIIEEYLRNPCKIQVKAKTKTANTVTQKFIVIKGFRKIDALDRL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+ S       L    ++V A++G++ Q +R   +   R  ++ + 
Sbjct: 243 LETEETDGVIIFVKTKTSTIEVADNLKALGYKVAAINGDMQQSQREYIVDQFRSAKSDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGIDL  +  VI+ ++ ++ +  +HR GRTGRAGR+G S+ ++P    R    
Sbjct: 303 VATDVVARGIDLERISHVINYDMPNDTDTYVHRIGRTGRAGREGTSISLVPLKEMRFLRT 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLA-KHDP 413
           L R     +     PS + + +   +    RI+       S+   ++ +  +    + D 
Sbjct: 363 LERFTGSPMQEVFMPSAKDLAQSRVEHFKARIISALDKNKSLDKYKEIITSIRDELQLDS 422

Query: 414 EKIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDD---------------SRAFKVGG 457
           E++ AG   + +      P EI        RD                     R  +   
Sbjct: 423 EELLAGLTLLAQGKKTFFPREIQAKEEKPARDNRNSRDGRRNERFERRNDQGDRTKRFDK 482

Query: 458 GSRDNFK----GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
             R   +      + + L VG     +AR ++  +     I+ + I  I +Q D T V++
Sbjct: 483 ADRKPRRAVNIDLTTYKLDVGRDNDVQARNIVGAIANEGNIDSKHICNISIQKDYTLVDL 542

Query: 514 SAD----GVDLLRRTVKLDKGIQLK 534
            A+     ++ L++     K + L 
Sbjct: 543 PANLSPKVINHLKKVWVAGKKLNLT 567


>gi|115379574|ref|ZP_01466663.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
 gi|115363432|gb|EAU62578.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
           [Stigmatella aurantiaca DW4/3-1]
          Length = 608

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 164/578 (28%), Positives = 263/578 (45%), Gaps = 46/578 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE++     + EALS  GY   T +Q A L P L  KD+L  A TG+GKT AF L L 
Sbjct: 36  NTFESLGLLPPLVEALSALGYEEPTPIQRAALPPLLEGKDLLGIAATGTGKTAAFSLPLL 95

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         AS   AL + PTRELA+QV   +     K G+ V    GG  + ++ R
Sbjct: 96  QRITPGAHAPFTAS---ALVLVPTRELAMQVAEAIHRYGQKLGISVVPLYGGQVISQQLR 152

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VV TPGR  DH++ K L +  ++ VVLDEADEMLD+GF +D+E IL S+P+K
Sbjct: 153 VLKRGVDVVVATPGRALDHLQRKTLKLEQVRVVVLDEADEMLDMGFAEDLEAILSSTPEK 212

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIV 236
           R+  +FSAT+ P I ++A+ + ++ VRV IA E  +      +   A +V  + +   + 
Sbjct: 213 RQTALFSATLPPRIASIAERHLREPVRVRIAREKVESGELPRVRQTAYIVPRAFKVATLS 272

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       AIVFC TR  V   T  L  H ++  A                     A 
Sbjct: 273 RVLDVEAPTAAIVFCRTRTEVDELTLSLNGHGWRXXAXXXXXXXXXXXGXXXXRLSHSAD 332

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  V++ ++ + PE  +HR GRTGRAGR+G+++ ++     R  
Sbjct: 333 LLVATDVAARGLDISRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLL 392

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + +     +     P+V  +R +  +     L++ L    +    + +V+ L A+ D 
Sbjct: 393 RNIEKLTGQRIEVATVPTVADLRAKRLEVTRASLREALVAGGLDS-YRGLVEGLAAEFDV 451

Query: 414 EKIAAGFLRIHR----AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK----- 464
            ++AA  +++ +     G    EE  PV       R R + R  +         K     
Sbjct: 452 MEVAAAAVKLLQEARDEGHAQNEEEIPVVPPPSEKRGRTE-RPSRGAPPPERRGKAEAPP 510

Query: 465 --------------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRV 504
                                 +   +  G +       L+  +   +G+    +GAI++
Sbjct: 511 SERPRPPEKGAPRRGTSPDWDITRLYIGAGRRVGIRPADLVGAITGEAGLESSQVGAIQI 570

Query: 505 QPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGG 538
               + VEV     +     LR+     + + ++   G
Sbjct: 571 ADTFSLVEVPEAYANQIVTALRQATLRGRKVTVRRDRG 608


>gi|323491514|ref|ZP_08096694.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
 gi|323314239|gb|EGA67323.1| ATP-dependent RNA helicase DeaD [Vibrio brasiliensis LMG 20546]
          Length = 643

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/552 (30%), Positives = 272/552 (49%), Gaps = 20/552 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L    
Sbjct: 13  LNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGA
Sbjct: 73  RK------PQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++  +       +  EK  ++VD L    + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFAELVDKLQESLELDAATLAAILL 426

Query: 422 RIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-----NFKGSSWFSLSVGS 475
           +  +           P+     RD+ R   R      G R+     N +    + L VG 
Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRREGGRSFNTQDWDTYQLQVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLK 534
           +Q  + + ++  L    G+ + SIGAI++    T+V++            KL K  I+ K
Sbjct: 487 EQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSS--ETAGKLQKLRIRQK 544

Query: 535 YLGGEKPDFRGY 546
            +     DF  +
Sbjct: 545 QVDAVVCDFNDF 556


>gi|238797547|ref|ZP_04641044.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
 gi|238718544|gb|EEQ10363.1| DEAD/DEAH box helicase domain protein [Yersinia mollaretii ATCC
           43969]
          Length = 612

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 166/575 (28%), Positives = 261/575 (45%), Gaps = 52/575 (9%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AQTGSGKT AFGL L   + AE        AP  L +APTRELA+QV   L         
Sbjct: 2   AQTGSGKTAAFGLPLLHNIKAE------LKAPQVLVLAPTRELAIQVAEALSSFSKDING 55

Query: 104 VVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V  V   GG     + R L+ G  IVVGTPGRL DH++   LN+S+L  +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E I+   P + +  +FSAT+  AI  + + + KD   V I S      DI   
Sbjct: 116 MGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQS 175

Query: 223 AV-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +    ++  A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 FWRVGGGYNKKEALVRFLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQS 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L  ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLDRLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDE 400
           G ++  +    +R  + + R   +++     P+ E + ER   +        L+S   D 
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVQLPNAELLGERRLAQFAAKVGQQLESSDLDL 355

Query: 401 KKMVDVLL---AKHDPEKIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRF------- 446
            + +   L    + D E +AA  L++ +      L       P    + RD         
Sbjct: 356 YRALLAKLQPEEEFDLETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGND 415

Query: 447 ------------RDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
                       R DSR    +     R +      + + VG     E R ++  +    
Sbjct: 416 RGRDRGDSRREPRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEG 475

Query: 493 GINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKS 548
            I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R  + 
Sbjct: 476 DISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERP 535

Query: 549 SGF-----------KSKNSQDGATKRFKRFKGASK 572
           +G                 +DGA    +R  G+ +
Sbjct: 536 AGGNGGERRGGPRAAGGERRDGAGAPPRRSFGSDR 570


>gi|288801723|ref|ZP_06407165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
 gi|288335765|gb|EFC74198.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           melaninogenica D18]
          Length = 640

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 161/538 (29%), Positives = 260/538 (48%), Gaps = 20/538 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+SE G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       + +    A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 61  LLQRID------TSSKETQAIVLSPTRELCLQIADDLKEFSKYIPHLHIAAVYGGASIDT 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL   
Sbjct: 115 QIRQLRHGVQIIVATPGRLIDLMHRGKARLDKVRNVVLDEADEMLNMGFQESITEILTGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + RE +   V    PS E I ++   + + D L  D  +       K ++      D 
Sbjct: 355 RNIEREISKDFVDGTLPSPEEICKKQLFKTMDDILKTDVDEDQIAPYMKDINRQFEYIDK 414

Query: 414 EK-----IAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSS 467
           E      ++A F R       A E   P S  +  D R            G R    G  
Sbjct: 415 EVVIKKIVSATFGRFLDYYKNAQEIEKPSSRSAREDSRGTRGEGRGSRNRGPRKAESGYK 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
              +++G         +M  + ++    +Q++G I +    +++EV       + +++
Sbjct: 475 RLFINLGKADGFYPGEVMQFINKNVH-GKQAVGHIDLLAKQSYIEVPEQDAQKVMQSL 531


>gi|254302223|ref|ZP_04969581.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322415|gb|EDK87665.1| ATP-dependent RNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 529

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 154/549 (28%), Positives = 255/549 (46%), Gaps = 35/549 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLSEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F       A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FENLEHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  +LDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFILDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AK + K+   + + S        +     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPDEIMKVAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   D E 
Sbjct: 360 QIQKAVKKEIKKEKLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLKMEDAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 420 IVASLLKLSYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL----LRRTVKLDKGI 531
           K     + L+  + + + + +  I    V    +FV V     ++      ++ K  K +
Sbjct: 461 KDGMTPKKLVEFIIKKAKVKQSYIKNAEVYEGFSFVSVPFKEAEIIVEAFAQSRKGKKPL 520

Query: 532 QLKYLGGEK 540
             K     K
Sbjct: 521 IEKAKTKNK 529


>gi|305682037|ref|ZP_07404841.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
 gi|305658510|gb|EFM48013.1| ATP-dependent RNA helicase DeaD [Corynebacterium matruchotii ATCC
           14266]
          Length = 721

 Score =  278 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 160/565 (28%), Positives = 266/565 (47%), Gaps = 45/565 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+   G+   + +Q   +   L   DVL  AQTG+GKT AF L + S + A+ 
Sbjct: 79  LPKPVVKAVENVGFETPSPIQAQTIPVLLDGHDVLGLAQTGTGKTAAFALPILSLIDAD- 137

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDLQNG 124
                   P AL +APTRELA+QV    +         ++V       +   +   L+ G
Sbjct: 138 -----IRHPQALILAPTRELALQVADSFQVFVDHLDGDISVLPIYGGQAYGIQLSGLRRG 192

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVVGTPGR+ DH+    L+IS L+ +VLDEADEML++GF++D+E IL  +P+ +++ +
Sbjct: 193 AQIVVGTPGRVIDHLEKGSLDISELRFLVLDEADEMLNMGFQEDVERILADTPEDKQVAL 252

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  L+K Y  D   + + SE R +++I  R + VA  ++ +A+  IL     
Sbjct: 253 FSATMPSGIRRLSKQYMNDPHEIQVKSETRTNTNITQRFLNVAHRNKLDALTRILEVTEF 312

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+       + L    F   A++G+++QQ+R   ++ ++DGR  + +ATDVA
Sbjct: 313 EAMIMFVRTKFETEELAEKLRARGFNAAAINGDIAQQQRERTVEQLKDGRLDILVATDVA 372

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++ S+ E+ +HR GRTGRAGR G ++  +    +R    + R  N
Sbjct: 373 ARGLDVERISHVLNYDIPSDTESYVHRIGRTGRAGRSGEAILFVTPRERRFLRNIERATN 432

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDP--EKIAA 418
             +     P+V+ + E    +        +S++  +    + +V     +HD   E IAA
Sbjct: 433 APLQEMELPTVDEVNESRKAKFADS--ITESLENTQVAVFRNLVKAYSEQHDVPLEDIAA 490

Query: 419 GFLRIHRAGLCAPEEITPVS-------------------------LVSGRDRFRDDSRAF 453
                 RAG        PV                                  R D    
Sbjct: 491 ALATQARAGDEFLMTEPPVEKRRNRRDRDRNDRGDRGYDRFDRDRDDRRGGYNRGDRGDR 550

Query: 454 KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE- 512
              G      +    + L+VG +Q      ++  L    G++ +  G I +  D T VE 
Sbjct: 551 GGRGRFDRGSQDMETYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRITIGSDFTLVEL 610

Query: 513 ---VSADGVDLLRRTVKLDKGIQLK 534
              +     D LR T    + I ++
Sbjct: 611 PKGLPKSVFDNLRDTRISGQLIHIE 635


>gi|256830240|ref|YP_003158968.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579416|gb|ACU90552.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 530

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 163/558 (29%), Positives = 261/558 (46%), Gaps = 34/558 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F  +   ++  +ALS +G+   T +Q   +   L    D++  AQTG+GKT AFGL 
Sbjct: 1   MTTFSELGLSELSIQALSRKGFEEPTPIQIKTIPAVLTGDSDIVAQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L  +           AL +APTRELA+QV  E+  L     + VA   GG S+  +
Sbjct: 61  LLEMLDPD------VRTVQALVLAPTRELAIQVAEEVNSLRGGRTINVAPIYGGQSMEIQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  +VVGTPGR+ DH+R   LN+S ++ ++LDEADEML++GF DD+  I++ + 
Sbjct: 115 LRSLKKGVSVVVGTPGRVLDHLRRGSLNLSGIRFLILDEADEMLNMGFLDDVLEIMEQTA 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++R ++FSAT+ P I  +AK Y  D   +   SE    +  D     VA+SD+  A+  
Sbjct: 175 TEKRTMLFSATMPPEILRIAKKYMGDYQIIKAVSEQLTATQTDQIYFEVAMSDKFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        +VF  T+      ++ L E  ++   L G++SQ  R   L   +     +
Sbjct: 235 IIDMEPDFYGLVFTRTKIDADAVSQRLMERGYEADTLHGDMSQSLREKMLIKFKKKLVTI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+ +L  +PE  +HR GRTGRAG++G+++  I  +  RR +
Sbjct: 295 LVATDVAARGIDVHDLTHVINFDLPHDPEAYVHRIGRTGRAGKQGIAITFITPSEYRRLQ 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + + A   +     P V  + +    RI   LQ+ +  +  + +   M   LL +  P 
Sbjct: 355 FISKHARTDIRKARLPKVADVIDMKKGRIRAELQEIMTTEP-ELEFMGMAQELLDQSKPR 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +  A  L+                         D S   ++G     +  G S   ++ G
Sbjct: 414 ETLAALLQYMFQEEL------------------DASNYKEIGDAFVVDKTGKSRLFVTQG 455

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            K     + L+  L     I  + I  I++     FV +     + +       KG +L 
Sbjct: 456 RKDGLTPKRLLTFLGDKCNIPPKKIWDIQIMETFAFVSLPFQDAERVLAMFNKGKGTELA 515

Query: 535 YLGGEKPDFRGYKSSGFK 552
           +    K   R    +  +
Sbjct: 516 FT---KAKARPSAPAPRR 530


>gi|256832539|ref|YP_003161266.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256686070|gb|ACV08963.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 657

 Score =  278 bits (709), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 156/584 (26%), Positives = 272/584 (46%), Gaps = 37/584 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I  A+ + G+   + +Q+  +      +D+   AQTG+GKT AFG+ L +++   
Sbjct: 55  NLPNQIQRAVDDLGFTVPSKIQQQAIPVLFEGRDITGIAQTGTGKTAAFGIPLLASID-- 112

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               +      AL +APTRELA+QV   +E        +  +   GG     + R L+ G
Sbjct: 113 ----TSVRQVQALVLAPTRELAIQVSEAIESFARHMPGLETLAVYGGSPYPPQIRALKTG 168

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VVGTPGR+ DHI    L++S ++ +VLDEADEML +GF DD+E +   +P  R++ +
Sbjct: 169 VHVVVGTPGRVIDHIERGTLDLSQVRFLVLDEADEMLRMGFADDVEKVFSETPADRQVAL 228

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  +A+ +  + V + +A ++   + ID    +V    +  ++  +L     
Sbjct: 229 FSATMPPAIRRVAQRHLTNPVEIAVARQSTTVTAIDQEYAVVPFRHKTGSLYRVLATSDV 288

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVFC TR +       L E       +SG++ Q++R   ++ +R+G+  V +ATDVA
Sbjct: 289 EAAIVFCRTRGAAEEVGAALIERGVSAATISGDVPQKDREKIVERLRNGQLDVLVATDVA 348

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LV++ ++   PE  +HR GRTGRAGR+G ++  I    + +   + R   
Sbjct: 349 ARGLDVDRIGLVVNFDIPGEPEAYVHRIGRTGRAGRQGRALSFITPAERGKLRSIERTIR 408

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAA---- 418
             +   P PS   + E   + +L +      I+     M + L+  +  D E  A     
Sbjct: 409 TELKEIPIPSPADVSEHKMRTMLTN--LSTRIEAGRLSMYEQLIDSYLADSEHSATTVAA 466

Query: 419 -------------GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR-----AFKVGGGSR 460
                                     +E +     S R R  D  R       + G  +R
Sbjct: 467 ALAALAVGDSGPRARADQEEYERQVADEASSRRQASSRTRGDDRGRSDRPARERSGRPAR 526

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD- 519
                 + + ++VG    A+ R ++  L    G+    +G I +    + V++SAD  + 
Sbjct: 527 SRDGEGTTYRIAVGYNDGAQPRGIVGALTNEGGLRGSDVGRINMFATFSLVDISADLDEP 586

Query: 520 ---LLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGA 560
               + +     K ++++   G        +    + ++S  GA
Sbjct: 587 TMARIAKARLGSKSLRIRLDDGGPRGGSPRRGGRDEYRDSHPGA 630


>gi|149279609|ref|ZP_01885738.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149229645|gb|EDM35035.1| ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 620

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 151/537 (28%), Positives = 272/537 (50%), Gaps = 17/537 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           I   +  A+ + G+ N T +QE  +   L    D +  AQTG+GKT AFGL L   +  +
Sbjct: 10  ISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           +++      P AL + PTREL +Q+  +++     T     V   GG ++ ++ R+++NG
Sbjct: 70  SNK------PQALILCPTRELCLQITNDIKNFSKNTSGANVVAVYGGANIMQQLREIRNG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGR+ D I  K ++ +++K VVLDEADEML++GF++DI  IL ++P  ++  +
Sbjct: 124 VQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +AKNY    V + + ++N  + +I++    V   D+  A+  I+ ++  
Sbjct: 184 FSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYTVRARDKYAALKRIVDFNPE 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VFC T+       + L +  +   AL G+LSQQ+R   +Q  RD   ++ IATDVA
Sbjct: 244 IFGVVFCKTKMDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRHMQLLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+  L    E+  HRSGRTGRAG+ G+S+ ++      +  ++ R   
Sbjct: 304 ARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQIERIIG 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
                   P+   + E+    ++     ++  +   ++ +  ++   A+   E +   F 
Sbjct: 364 KQFTKASLPTGFDVCEKQLFALVHKVHNVEVNEAQIEQYIPRIMDEFAELSKEDVIKRFA 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            +         +  P   ++  D   +     + G     + +G +   +++GS      
Sbjct: 424 SLEFNRFLEYYKNAPD--LNATDERGERGERGERGERGARSNEGYTRLFINLGSVDDFTR 481

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKGIQLK 534
             L+  +C +  I+ +SIG I ++   +F EV    VD L    K     ++G++++
Sbjct: 482 GDLLSFVCNNGKISGKSIGKIDLKGVYSFFEVEDATVDALFNNFKGVEFNNRGVRIE 538


>gi|260777273|ref|ZP_05886167.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606939|gb|EEX33213.1| cold-shock DEAD-box protein A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 641

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 159/553 (28%), Positives = 273/553 (49%), Gaps = 17/553 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   +   D L  AQTG+GKT AF L L + L    
Sbjct: 13  LNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAFSLPLLNKLELSQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L    +G+ V    GG S+  + R L+NGA
Sbjct: 73  RK------PQAIVLAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  + + + +D + +++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQG-DEKKMVDVLLAKHDPEKIAAGFL 421
           S+     P  + + E    ++   L+      S++   E         + D   +AA  L
Sbjct: 367 SMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLEKFGELVEKLQDALEIDAATLAAILL 426

Query: 422 RIH---RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSK 476
           +     R      E+    ++   + R ++     + G G   NF    W  + L VG +
Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRGRDRNFNNQDWDTYQLQVGRE 486

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           Q  + + ++  L    G+ + SIGAI++    T+V++           ++  + I+ K +
Sbjct: 487 QGVQVKDIVGALANELGLVKGSIGAIKLAQGETYVQLPKAMSSETASKLRKLR-IRQKQV 545

Query: 537 GGEKPDFRGYKSS 549
                DF  ++  
Sbjct: 546 DAVVCDFNDFREP 558


>gi|293401901|ref|ZP_06646041.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304559|gb|EFE45808.1| DEAD/DEAH box family ATP-dependent RNA helicase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 580

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 166/587 (28%), Positives = 288/587 (49%), Gaps = 40/587 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    I +A+ E GY N T +Q   +   L  KDVL  + TG+GKT AFG+  
Sbjct: 1   MTTFNELPISSEIMKAVEEMGYENATDIQAQSIPCILEGKDVLGRSNTGTGKTAAFGIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              ++  N        P AL I PTREL  QV  EL        GV +    GG  + R+
Sbjct: 61  IEKVIPGN------KFPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDS 175
            + L+ G  IVVGTPGR+ DH+  + L +  +  ++LDEADEML++GF++DIE I  +  
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLNRRTLKLQDVNMIILDEADEMLNMGFKEDIEEILSMMP 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +  + + ++FSAT   AI  + + +QKD VRV I S  R    ++          + NA+
Sbjct: 175 ADNEHQTILFSATWPQAILKITEQFQKDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L ++     ++FC+T+  V    + L +H  +  +L G++ Q+ RS  ++  R+G +
Sbjct: 235 RVLLNHYDPDLCMIFCNTKKMVDELCEELNKHDIKATSLHGDMKQEFRSRVMEQFRNGTS 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR- 354
            + IATDVAARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ +I    QR 
Sbjct: 295 PILIATDVAARGIDVDDIDLVVNFDIPQDMEYYIHRVGRTGRAGKKGLAITLISGGKQRG 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             + + R    ++     P+   + E +    +             K+  D  + +   E
Sbjct: 355 AIKDVIRYTKTNITRHALPTSAQMMEANRNAFIAKV----------KEACDEGITEESIE 404

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IA   +     G+     I+ +  ++ ++   D      V   + D    +     SVG
Sbjct: 405 -IANALMA---DGIALENIISALISMNYKNEVIDIEEEENVKRYASD--FDAITLKFSVG 458

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQ 532
                +   ++  +    G++ ++IG I V+P+ + V+++AD VD++   ++    +  +
Sbjct: 459 RTHGIQPGNIVAAIIEECGMSPKAIGRIDVRPNFSLVDIAADKVDIVLNNMQRTTIRKQE 518

Query: 533 LKYLGGEKPDFRGYKSSGFK----------SKNSQDGATKRFKRFKG 569
           +       P  +  +  G K          +++S DG+T+R  +  G
Sbjct: 519 VMVEIDSAPKRKTNRRDGAKNNTRDASRRNNRHSGDGSTRRGAKRPG 565


>gi|218777997|ref|YP_002429315.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759381|gb|ACL01847.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 567

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 164/566 (28%), Positives = 259/566 (45%), Gaps = 28/566 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   +  A+   G+   T +QE  +   +   +D +  AQTG+GKT A+GL L  ++   
Sbjct: 8   LSDELARAVESLGFEKPTPIQEKAIPYLIEGERDFVGLAQTGTGKTGAYGLPLIQSIDLS 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
             R      P A+ I PTREL +Q+  +L         + VA   GG  + ++ R ++ G
Sbjct: 68  IPR------PQAIVICPTRELCLQIAGDLRDFAKYMEDIRVAAVYGGADIVKQIRTVKGG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+  TPGRL D I  K +   H+  VVLDEADEML++GF++DI  IL S P +RR  +
Sbjct: 122 AQIIAATPGRLLDLINRKAIKPGHVTRVVLDEADEMLNMGFQEDINAILSSLPDERRTWL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   +  +A  YQ + V V +   N+   DI +   ++   +R  A+  IL Y   
Sbjct: 182 FSATMPKGVAAIAAKYQTNPVEVTMGGRNQASPDISHICYMIHAKNRYAALKRILDYCPD 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VFC TR       + L    +   AL G+LSQ +R   +   R    +V  ATDVA
Sbjct: 242 MFGLVFCRTRKDTQEIAEALMADGYNADALHGDLSQPQRDQVMGRFRRKAVQVLAATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  VIH  L  +PE   HRSGRT RAG++G S+ +I      R + L R   
Sbjct: 302 ARGLDVDDISHVIHYVLPDDPEAYTHRSGRTARAGKQGKSIALITPRENYRLKDLERRGK 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DPEKIAAGFL 421
            S   +  P    I ++    + +    +   + D  + +  +L        E+I    +
Sbjct: 362 FSFQLDSLPQGRDICQKQVAGLAEKLASVSVRENDIAEYMPDILEAFEGLSREEIIQKAV 421

Query: 422 RIHRAGLCAPE------EITPVSLVSG-------RDRFRDDSRAFKVGGGSRDNFKGSSW 468
                 L             P   V G       R++     R  K     R   + +  
Sbjct: 422 STEFNRLLDYYRNAGDINAKPREKVKGQAGAKFTREKIVGKGRHGKGPKKDRLKGRKTQR 481

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK-- 526
           F ++ G   K     ++ ++C +SGI  +SIG I +  + +F EV       + R ++  
Sbjct: 482 FFINRGRLDKVNEGAIVRLVCENSGIKSRSIGQIDLNREFSFFEVEKSLAPRVLRGLENA 541

Query: 527 --LDKGIQLKYLGGEKPDFRGYKSSG 550
               K +Q++    +KP  +G K + 
Sbjct: 542 TLDGKALQVRAADKQKPAEKGRKKAA 567


>gi|53711460|ref|YP_097452.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|52214325|dbj|BAD46918.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
          Length = 636

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 169/592 (28%), Positives = 279/592 (47%), Gaps = 33/592 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQKINVKN------RIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY  +A  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  V    R     ++ + G  SR    G +   
Sbjct: 412 LSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAGKS-REGKSSRQAEPGYTRLF 470

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +  + +F EV       + + +     
Sbjct: 471 INLGKMDNFFPHELITLLNNNTR-GRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW 529

Query: 528 -DKGIQLKYLGGEKPDFRGYKSS-------GFKSKNSQDGATKRFKRFKGAS 571
             + + ++  G E       +         G + ++S   A ++ +R KG+ 
Sbjct: 530 NGRKVTVEVAGEEASTEHKGRGKRNEGNDQGGRGRSSAPSADRK-ERGKGSK 580


>gi|298387076|ref|ZP_06996630.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
 gi|298260226|gb|EFI03096.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           1_1_14]
          Length = 647

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 30/583 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITP--VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              E +    +                  +    R+R   DSR      GSR    G + 
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRDREEIETPTDSRERNTRDSRE----RGSRKAAPGFTR 467

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL- 527
             +++G         L+ +L  ++   R  +G I +  + +F EV       + + +   
Sbjct: 468 LFINLGKMDSFFPSELISLLNSNTR-GRIELGRIDLMKNFSFFEVEEKEAQNVVKALNRA 526

Query: 528 ---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
               + + ++  G E  + R    S  +    +   +   KR 
Sbjct: 527 NWNGRKVSVEVAGEEAGEGRRGSGSAERRGGKRPFGSSSEKRG 569


>gi|253582317|ref|ZP_04859540.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
 gi|251835856|gb|EES64394.1| ATP-dependent RNA helicase [Fusobacterium varium ATCC 27725]
          Length = 527

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 148/537 (27%), Positives = 254/537 (47%), Gaps = 28/537 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + +   +ALS++GY   T +Q   +   L   KD++  AQTG+GKT AF L +       
Sbjct: 12  LGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPILE----- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P     A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G 
Sbjct: 67  --RFEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D +  K + + +LK  +LDEADEML++GF +D+E IL+S+   +RML F
Sbjct: 125 DIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDDKRMLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK + +D   + + +        D     V   D+  A+  I+      
Sbjct: 185 SATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDF 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V+     L +  +    L G++SQ  R   L+  +  +  V +ATDVAA
Sbjct: 245 YGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  ++ +    
Sbjct: 305 RGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKIVKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  E  P V+ + +    R++++   +  ++   + K +   LL   D   I A  ++ 
Sbjct: 365 EIRKEKVPGVKDVIQAKKFRLVEELNHILAENNFDNFKDLSRELLNGEDAVDIVAALIKH 424

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               +                   D+S   ++   +     G     +++G K     + 
Sbjct: 425 SYEDVL------------------DESNYNEINNSASLEKTGKVRLFVALGRKNDMTPKK 466

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           L+ M+   + ++ + +  + V  + +F+ V     + +    K +K  +   +   K
Sbjct: 467 LVEMVTSKTKVDERKLKNVEVYENFSFLSVPFKEAEEIIEIFKQEKKGRKPLIEKAK 523


>gi|149189555|ref|ZP_01867838.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
 gi|148836534|gb|EDL53488.1| ATP-dependent RNA helicase DeaD [Vibrio shilonii AK1]
          Length = 634

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 160/556 (28%), Positives = 275/556 (49%), Gaps = 22/556 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L  + 
Sbjct: 13  LNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLNLDQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NGA
Sbjct: 73  RK------PQAVVLAPTRELAIQVAAEMKNLGQNINGLKVLEIYGGASIVDQMRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPETAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  +   + ++   V++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKKIVDRFLREPEYVDVAGKNHTVDKVEQQFWVVKGVEKDEAMARLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGFL 421
           S+     P  + + E    ++   L+      S+    + +  +  + + D   +AA  L
Sbjct: 367 SMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLDKFAELVEKLQESLEIDAATLAAILL 426

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-------NFKGSSWFSLSVG 474
           +  + G      I    +++  +R +   +  + GG           N      + L VG
Sbjct: 427 K-RQQGKRPLFYIGEDPMIAAIERDKQRRKERREGGRDGGRDGRRSFNTADWDTYQLQVG 485

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLRRTVKLDKGIQL 533
            +Q  + + ++  L    G+ + SIGAI++  + T+V++      D+  +  KL   I+ 
Sbjct: 486 REQGVQVKDIVGALANELGLTKGSIGAIKLDRESTYVQLPKQMTSDVAGKLRKL--RIRQ 543

Query: 534 KYLGGEKPDFRGYKSS 549
           K  G    DF  ++  
Sbjct: 544 KEAGAVVVDFTDFREP 559


>gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola
           23]
          Length = 600

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 156/575 (27%), Positives = 262/575 (45%), Gaps = 18/575 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I +A+ E G+V+   VQEA++   L  E DV+  AQTG+GKT AFG+ 
Sbjct: 1   MKTFEELGVCEQIRKAIEELGFVHPMPVQEAVIPYLLGNENDVIALAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHR 116
           L   +       +      AL ++PTREL +Q+  +L         V      GG ++  
Sbjct: 61  LLERID------TTQRYTQALVLSPTRELCLQIADDLRDFAKYMDGVHVEAVYGGAAIEP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G  I+V TPGRL D +      +  +  +VLDEADEML++GF D I  I +S 
Sbjct: 115 QMRALKKGVEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEMLNMGFSDSINEIFESL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                 LMFSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 SADHHTLMFSATMSKEVERVAKKYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ ++    AI+FC T+         L +  +   +L G+L+QQ+R   +Q  R+   +
Sbjct: 235 RIVDFYPRIFAIIFCRTKVETQEVADKLIKDGYNAESLHGDLNQQQRDQTMQKFRNHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ ++    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINFGLPDDIESYTHRSGRTGRAGKKGTSISIVHSREKFKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + +      V    PS E I ++   +++   +  D    +     + ++      D 
Sbjct: 355 RNIEKIIGKEFVKAEIPSAEEICKKQLYKVMDQIVKTDVDDEEIAPFMQDINRYFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +++    + +      A     P       ++     ++ K         KG     +++
Sbjct: 415 DELIKKIVSLEFGKFLAYYADAPEIEPVVPEKKDRRQQSDKQKL-QNKPQKGYRRLFINL 473

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G +       LM  L R  G  RQ +G I +   +++ EV       +   +    GI+ 
Sbjct: 474 GKRNGFYPGELMQTLNRFVG-GRQEVGHIDLLDSISYFEVPEKDAKKVMLQLT---GIRY 529

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
           K       D       G +     + + K  ++ K
Sbjct: 530 KGQTVRCNDADDASKGGERQGKGGERSAKPKRQKK 564


>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 543

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 151/542 (27%), Positives = 252/542 (46%), Gaps = 35/542 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ + G+   T +Q   +   +   D++  +QTG+GKT AFG+ +     A+
Sbjct: 10  NLSNEILKAVEDLGFEEATPIQSLSIPKMMTGIDIIGQSQTGTGKTAAFGIPVLEKTNAK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           N       A  ++ + PTRELA+QV  EL+        +  V   GG  + R+   L  G
Sbjct: 70  N------KAVQSVILCPTRELAIQVAEELKLFSKYKKGINIVPVYGGQPIQRQMIALSKG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+GTPGR+ DH+  + L +     V+LDEADEMLD+GFRDDIE IL S P+ R+ + 
Sbjct: 124 AQIVIGTPGRVIDHLERRTLKLDTASIVILDEADEMLDMGFRDDIELILKSIPEGRQTVF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+     +L K YQ     + + SE      I+     +    +  A+   L  +  
Sbjct: 184 FSATMPKEFLSLTKKYQHSPETIKVVSEKLTVPSIEQYYFDIKEHQKLEALTRCLDMYDP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V   T  L    +   A+ G+++Q +R+  +   R+G   + IATDVA
Sbjct: 244 KLSLVFCNTKKRVDEVTSSLQARGYYADAIHGDMNQSQRNRVMSKFRNGSIELLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +++V + ++  + E+ +HR GRTGRAG+ G +   +      +   + R   
Sbjct: 304 ARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAGKAGKAYSFVSGKDIYKLRDIQRYTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----KIAAGF 420
            ++     PS+  + E   + I+ D +     + D +K   +  +    E     +AA  
Sbjct: 364 ANIKRMQVPSLADV-ENTKETIMLDKVKEVLKEKDLEKYAGMAESLISDEITSLDVAAAL 422

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L+I  A     +E                    K       N    +   +++G K    
Sbjct: 423 LKIMLASEKREQEQ-------------------KADISGNINKYSMTRLFINIGKKNGVR 463

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYL 536
           A   +  +   +GIN   IG I++    +FVEV  +      + L  +    K + ++  
Sbjct: 464 AGDFVGAITGETGINGSLIGDIKILDAFSFVEVPQEYAVNIINALHSSNIKGKKVSVEPA 523

Query: 537 GG 538
            G
Sbjct: 524 KG 525


>gi|254786531|ref|YP_003073960.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
 gi|237683925|gb|ACR11189.1| cold-shock DEAD box protein A dbpA [Teredinibacter turnerae T7901]
          Length = 604

 Score =  277 bits (707), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 161/597 (26%), Positives = 275/597 (46%), Gaps = 37/597 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + + + + GY   + +Q A +   +  +DV+  AQTG+GKT AF L + + +   
Sbjct: 16  NLPSSLLDTVRKLGYERPSPIQAATIPALIEGRDVIGMAQTGTGKTAAFALPILAKIK-- 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               S +  P AL + PTRELA+QV    +   A       +   GG  +  + R LQ G
Sbjct: 74  ----SGSKNPQALVLCPTRELAIQVSEAFQSYAANIPNFHVLPIYGGQDMRTQLRGLQRG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGRL DH+  + L++S L  VVLDEADEML +GF +D+E IL  +P   ++ +
Sbjct: 130 VQVIVGTPGRLLDHLDRRSLDLSELHTVVLDEADEMLRMGFNEDVEAILKKTPGNHQIAL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P I  +A  Y K+ V V I +    + +I+    LV+ +++  A+  IL     
Sbjct: 190 FSATMPPPIRRVADTYLKNPVEVKIETSVTTNENIEQFYWLVSGTNKLEALTRILEVEDF 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+ S     + L    F    L+G+++Q  R   ++ ++ G+  + IATDVA
Sbjct: 250 EGMIIFVRTKNSTVDLAERLNARGFSAAPLNGDMNQALRERTIEQLKGGKLDMIIATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  + E  +HR GRTGR GR G ++  +    +R    + +   
Sbjct: 310 ARGLDVERISHVLNFDIPYDDEAYVHRIGRTGRGGRTGKAILFVAPRERRMLRSIEKTTR 369

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAA 418
             +     PS + +  R  Q         DSI  + K     ++A+        PE +AA
Sbjct: 370 QKITEMQLPSRQDLIHRRTQEF--KAAVTDSINMENKSFFQRIIAEMCHEQEISPEDVAA 427

Query: 419 GFLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG-----------S 466
               + +      P +    S    R++   +    +   G   N               
Sbjct: 428 ALAYLLQKDRPLLPPKGKEPSERPEREKREREFTPERSKKGELPNLGNAQSLRDYPEIVM 487

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLR 522
             F L VG       R ++  +   + I+   IG I++  D + V++ A   D    +L+
Sbjct: 488 ERFRLDVGRNHNVSPREIVGAIANEADIDSCYIGQIKIFDDFSTVDLPAGMPDELFQMLK 547

Query: 523 RTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSKNSQDGATKRFKR-FKGASKN 573
           +T  + + I LK L        + + +       K + ++       KR FKG  ++
Sbjct: 548 KTRVMQRPINLKRLDENGAKLAEANQQKQPPRNNKPRTNKPRKPAGKKRDFKGKDRS 604


>gi|257470192|ref|ZP_05634283.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064408|ref|ZP_07928893.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690084|gb|EFS26919.1| ATP-dependent RNA helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 527

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 148/537 (27%), Positives = 256/537 (47%), Gaps = 28/537 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + +   +ALS++GY   T +Q   +   L   KD++  AQTG+GKT AF L +       
Sbjct: 12  LGEKTIKALSKKGYEKPTPIQALTIPALLDGEKDIIGQAQTGTGKTAAFSLPILE----- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P     A+ +APTRELA+QV  E+  L     + +    GG S+  + R L+ G 
Sbjct: 67  --RFEPGKVVQAIVLAPTRELAIQVAEEMNSLANGKKIRITPVYGGQSIEFQIRQLKKGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D +  K + + +LK  +LDEADEML++GF +D+E IL+S+  ++RML F
Sbjct: 125 DIIVGTPGRVMDLMDRKLIKLDNLKYFILDEADEMLNMGFLEDVEKILESTNDEKRMLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK + +D   + + +        D     V   D+  A+  I+      
Sbjct: 185 SATMPNEILKVAKKHMRDYEVLAVKTRELTTDLTDQIYFEVHERDKFEALCRIIDLTKDF 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V+     L +  +    L G++SQ  R   L+  +  +  V +ATDVAA
Sbjct: 245 YGIVFCRTKNDVNDVVGKLNDRGYDAEGLHGDISQNYREVTLKRFKAKKINVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  ++ +    
Sbjct: 305 RGIDVNDLSHVINYSIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLLQIQKIVKT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  E  P V+ + +    R++++   +  ++   + K++   LL   D   I A  ++ 
Sbjct: 365 EIRKERVPGVKDVIQVKKFRLIEELNHILAENNFDNFKELSRELLNGEDAVDIVAALIKH 424

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               +                   D+S   ++   +     G     +++G K     + 
Sbjct: 425 SYEDVL------------------DESNYNEINNSAPLEKTGKVRLFVALGRKNDMTPKK 466

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
           L+ M+   + ++ + +  + V  + +F+ V     + +    K +K  +   +   K
Sbjct: 467 LVEMVTSKTKVDERKLKNVEVYENFSFLSVPFQEAEEIIEIFKQEKKGRKPLIEKAK 523


>gi|71277821|ref|YP_268464.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
 gi|71143561|gb|AAZ24034.1| RNA helicase DeaD [Colwellia psychrerythraea 34H]
          Length = 611

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 163/569 (28%), Positives = 269/569 (47%), Gaps = 49/569 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+   G+ + T +Q   + P L  KDVL  AQTG+GKT AFGL   + +    
Sbjct: 22  LPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKIDTSI 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            +      P  + +APTRELA+QV   +E       G+ VA   GG S   + + L+ GA
Sbjct: 82  KK------PQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+R K L +  L+  VLDEADEML++GF +DI++ILD  PK  +M +F
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  +A  + KD   + +A+  +  ++I   A  V+   +  A+  I       
Sbjct: 196 SATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYD 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR       + L    +  +AL+G+L+Q +R   +  M+ G++ + +ATDV A
Sbjct: 256 AMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVATDVVA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P + LVI+ +L  + E  +HR GRTGRAGR+GMS+  +            R  N 
Sbjct: 316 RGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREMYSIRHYERLTNG 375

Query: 366 SVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLA--KHDPEKIAAGFL 421
           +V+    P+++ I +   +  R+    +  D      +++V+ + A  +     +AA  L
Sbjct: 376 TVLNYDLPNIQDIGKIRIERTRVEVAKIVADKDISSMREIVEGMAAESEVSMIDLAAALL 435

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRA-FKVGGGSRDNFKGSS------------- 467
              +       +  P      R+R   + R   +   G+  N +G+              
Sbjct: 436 FQKQMKQPLQPKEDPKPRRDARERTDRNDRGNDRNSRGNDRNSRGNDSRSAGRDSRGGEN 495

Query: 468 ---------------------WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
                                 + L VG +  A    ++  +     ++   IGAI +  
Sbjct: 496 RSNRDEKPRKAKVNRSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYIGAINLHD 555

Query: 507 DLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
             +FV++       L       KG++++ 
Sbjct: 556 KHSFVQLPKGIPTDL---FNQLKGVRVRR 581


>gi|89072916|ref|ZP_01159473.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051438|gb|EAR56893.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 654

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 153/579 (26%), Positives = 268/579 (46%), Gaps = 27/579 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL   G+V  T +Q A +   L   D L  AQTG+GKT AF L + + +   
Sbjct: 38  DLADTLLSALDNMGFVAPTPIQAASIPLLLTGTDALGKAQTGTGKTAAFSLPVLNKVDLS 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 98  QHK------PQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMRALKNG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I  K L +  +   VLDEADEML +GF DD+ +I++ +P+  + ++
Sbjct: 152 AHIVVGTPGRVKDLISRKQLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPETAQRVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +   + ++  R+++A ENR  S ++ +  +V   ++D A+  +L     
Sbjct: 212 FSATMPPIVKEIVDRFLRNPARIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDT 271

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 272 DASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVV 331

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R   
Sbjct: 332 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTK 391

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGF 420
             +     P  + +      R+ ++          E   ++V+ L      D   +AA  
Sbjct: 392 SRMEEIQLPLRDLVAASRLNRLGEELAAQKEQTSVEAFVELVEKLQESIDVDAATLAAML 451

Query: 421 LRIHRAGLCAPEEITPVSLVS------------GRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           L+  +       +     + +                  +     + G     N      
Sbjct: 452 LQRQQGNRPLFYKGPDPMIAAIERESQRRERRGNDRDRGERGDRRERGERRSYNNADWDT 511

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRT 524
           + L VG +Q  + + ++  +    G++++ IGAI++ P  TFV++     A+    L++ 
Sbjct: 512 YQLQVGREQGVQVKDIVGAIANELGLSKEFIGAIKLAPTHTFVQLPKKMTAEVASQLKKL 571

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
                 ++   + GE       +S         +    R
Sbjct: 572 RIRQNDVKAVVVEGEVLREHRPRSGNRDGNRDGNRGGYR 610


>gi|28211624|ref|NP_782568.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204066|gb|AAO36505.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 524

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 150/524 (28%), Positives = 255/524 (48%), Gaps = 32/524 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+   + I +A+ + G+   + +Q  ++   L+  DV+  AQTG+GKT+AFG  + ++
Sbjct: 6   FNNLGLNEDILKAIEDMGFETPSKIQAEVIPIVLQGFDVIGQAQTGTGKTLAFGAPVLNS 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E+ +        ++ +APTRELA+QV +EL  +   T   +    GG S+ R+ + L
Sbjct: 66  ISNESKKVK------SIILAPTRELAIQVYKELTTVAKYTKFKLLPVYGGDSIDRQIKSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+GTPGR+ D I  K LN+SH++ +VLDEADEML++GF DDIE IL S  + RR
Sbjct: 120 KKGIDIVIGTPGRVQDLINRKALNLSHIEFLVLDEADEMLNMGFVDDIENILKSCNEDRR 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAIVNILR 240
            L+FSAT+   I  +AK Y K   +    ++N      ++     V   ++  ++  +L 
Sbjct: 180 TLLFSATMPSEIKKIAKKYMKKDAKHVAIAQNSMTVSSVEQFYYEVKQKNKFESLCKVLS 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC T+  V      + E  F    + G+++Q  R N L   ++      +A
Sbjct: 240 VDEPTRAIIFCKTKKGVDELVSSMKEKGFSAEGMHGDMTQSHRLNTLNRFKERTIPFLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D   VI+ +L  + E+ +HR GRTGRA +KG +   +        +R+ 
Sbjct: 300 TDVAARGIDVKDTSHVINYDLPQDTESYVHRIGRTGRANKKGTAYTFVTPKEFSSLKRIQ 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAA 418
           + +   +     P+++ + +     IL D     S         +V  L +K D   + A
Sbjct: 360 KISKSKINKRQLPTMDDVLKAKFDSILNDVEQTLSKDNYNTFIPLVKDLESKFDLTNVTA 419

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             + +      + +     +  +  D                      +   L+VG K +
Sbjct: 420 ALMSMLYNDEISYDYDDDNTESNSLD---------------------YTRIFLNVGRKDR 458

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
              + L+  L  ++ IN+  +G+I +     FV+++ D V  L 
Sbjct: 459 LNPKILLEFLDNNANINKSQVGSIDILDKFAFVDIATDRVGDLM 502


>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 659

 Score =  276 bits (706), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 172/565 (30%), Positives = 264/565 (46%), Gaps = 29/565 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY   + +Q   +   +  +D++  A TG+GKT AF L +   L  E 
Sbjct: 97  LAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQRLAQER 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R S  +APL L +APTRELA+QV   +          V    GG  +  +   L+ G  
Sbjct: 157 -RGSRGTAPLGLVLAPTRELAMQVTEAIARYGKGLRARVLAVYGGAPIGPQLGALKRGVD 215

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  D I    L++  L+ VVLDEADEMLD+GF +DIE IL ++P  R+ ++FS
Sbjct: 216 VVVATPGRAIDLINRGALSLDELEVVVLDEADEMLDMGFVEDIETILQATPDTRQAVLFS 275

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  LA+ Y  D V V I  E         +   A +V  S    A+  IL    
Sbjct: 276 ATMPRRIEVLARTYLTDPVLVRIQREEVPEGEAPRVRQTAYMVPRSHTTAALGRILELER 335

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC TRA V   T+ L     +  AL G + Q+ R+  +  +R+GR  + +ATDV
Sbjct: 336 PTAAIVFCRTRADVDAVTEALTGRGLRAEALHGGMDQEHRTRVVDRLRNGRTDLLVATDV 395

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ ++  +PE+ +HR GR GRAGR+G+++ ++     R    + R  
Sbjct: 396 AARGLDIDQLTHVVNHDVPKSPESYVHRIGRVGRAGREGVAITLVAPASVRHLRNIERLT 455

Query: 364 NVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDE------KKMVDVLLAKHDPE 414
              V   P P+V  +     +R    L++ L  D              M+  L  + D  
Sbjct: 456 GTPVPVAPVPTVADLAGARVERTKVALRERLLTDRQSAGRGADDGVAAMIASLAEEFDAV 515

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGR-----------DRFRDDSRAFKVGGGSRDNF 463
           ++AA  +RI R    APE+   + +VS                         G G R   
Sbjct: 516 EVAAAAVRIARDVSGAPEDEIDIPVVSAPREGRRERDGRGGPAGRREFGGSRGQGPRPPK 575

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G++   +S G       + ++  L   S ++ + IGAI++      VEV     D + R
Sbjct: 576 AGTTRLFVSAGRAAGVRPQDIVGALANESRLSGRDIGAIQIHERHALVEVPEHAADEVLR 635

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKS 548
            ++      +  L G + + R  ++
Sbjct: 636 ALR-----GVTTLKGRRANVRRDRA 655


>gi|307564611|ref|ZP_07627147.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
 gi|307346681|gb|EFN91982.1| putative ATP-dependent RNA helicase DeaD [Prevotella amnii CRIS
           21A-A]
          Length = 613

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 164/592 (27%), Positives = 272/592 (45%), Gaps = 26/592 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I +A+ E+G+     VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEDIRKAIEEQGFEYPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       +      A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 61  LLQRID------TSRKETQAIVLSPTRELCLQIADDLKDFSKYIPHLHIAAVYGGTSIEA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + ++L+ G  I+V TPGRL D +      + ++  +VLDEADEML++GF+D I  IL   
Sbjct: 115 QIKELKRGVQIIVATPGRLIDLMHRGKAKLENVCNIVLDEADEMLNMGFQDSITEILSGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSKDVERVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RLVDFYPKIYAIVFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ +L  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSIAIIHCREKYKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + R      V    PS E I ++   + + D L  D  +       K +       D 
Sbjct: 355 RNIERVIGKEFVDGTLPSAEEICKKQLFKTMSDILKTDVDEEQIAPYVKDIKHQFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAP-------EEITPVSLVSGRDRFRDDSRAFKVG---GGSRDNF 463
           E +    + +               E+ T  S  + R   R + R+ + G    G     
Sbjct: 415 EDLIKKIVSVTFGRFLNYYKDAEDIEKPTAQSRKAERSNDRGNGRSNRGGDRNRGYSKAE 474

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
           +G     +++G         +M  + +     RQ++G I +    +++EV       ++ 
Sbjct: 475 RGFKRLFINLGKDDGFYPGEVMQFINKHVH-GRQTVGHIDLLKKQSYIEVPERDARKVKD 533

Query: 524 TVKLD--KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +     KG +++    E         +G  S   ++    R    K   KN
Sbjct: 534 ALSGTSYKGKEVRCKDAEDVSRSRKGRTGKHSGYRKEDDFSRKIYGKEDWKN 585


>gi|295086065|emb|CBK67588.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 641

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 169/595 (28%), Positives = 277/595 (46%), Gaps = 32/595 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----SRDNFKGS 466
              E +    +              P        R     R  +  GG    SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRPEIEQPTDMRAERAGRGDRKEGGFEKRSRKAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNYSFFEVPEKEATNVIKALN 530

Query: 527 L----DKGIQLKYLGGEKPDFR----GYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                 + + ++  G E    R      +  G +     D    R++     SK+
Sbjct: 531 KAKWNGRKVVIEIAGEESGKGRESSSNERKGGKRFGGKSDERAPRYENKDRKSKD 585


>gi|237716826|ref|ZP_04547307.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405596|ref|ZP_06082146.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644524|ref|ZP_06722278.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294805785|ref|ZP_06764662.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442809|gb|EEO48600.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356471|gb|EEZ05561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640077|gb|EFF58341.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294447006|gb|EFG15596.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 643

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 171/595 (28%), Positives = 279/595 (46%), Gaps = 32/595 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+   I ++   +++ D   L+ ++ +E+++   +      L  
Sbjct: 355 REIERIIGKKFITGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIAGFMPEIYRKLEW 411

Query: 411 HDPEKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              E +     +  F R        PE   P          + D +       SR    G
Sbjct: 412 LSKEDLIKRVVSHEFNRFAEYYRHRPEIEQPTIESRSERARKSDRKENGFEKRSRKAAPG 471

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + +
Sbjct: 472 LNRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNFSFFEVPEKETVNVLKAL 530

Query: 526 KLDK--GIQL-----KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              K  G ++        GG+  +    +  G K     +    R++     SK+
Sbjct: 531 NRAKWNGRKVVVEVSSEEGGKGHENGSGERKGGKRSGKNEERAPRYENKDRKSKD 585


>gi|298483821|ref|ZP_07001993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
 gi|298270008|gb|EFI11597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           D22]
          Length = 643

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 171/595 (28%), Positives = 279/595 (46%), Gaps = 32/595 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRICNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+   I ++   +++ D   L+ ++ +E+++   +      L  
Sbjct: 355 REIERIIGKKFITGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIAGFMPEIYRKLEW 411

Query: 411 HDPEKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              E +     +  F R        PE   P          + D +       SR    G
Sbjct: 412 LSKEDLIKRVVSHEFNRFAEYYRHRPEIEQPTIESRSERARKSDRKENGFEKRSRKAAPG 471

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + +
Sbjct: 472 FNRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNFSFFEVPEKETVNVLKAL 530

Query: 526 KLDK--GIQL-----KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              K  G ++        GG+  +    +  G K     +    R++     SK+
Sbjct: 531 NRAKWNGRKVVVEVSSEEGGKGHENGSGERKGGKRSGKNEERAPRYENKDRKSKD 585


>gi|254505608|ref|ZP_05117754.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
 gi|219551261|gb|EED28240.1| cold-shock deAd box protein a [Vibrio parahaemolyticus 16]
          Length = 647

 Score =  276 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 161/555 (29%), Positives = 269/555 (48%), Gaps = 20/555 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L    
Sbjct: 13  LNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLGQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGA
Sbjct: 73  RK------PQAIVLAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P+  + ++F
Sbjct: 127 HIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPESAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++  +       +  EK  ++V+ L    + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAESRLAKLGAELETEKEHKALEKFSELVEKLQESLELDAATLAAILL 426

Query: 422 RIHRAGLC-APEEITPVSLVSGRDR---FRDDSRAFKVGGGSRDNFKGSSW--FSLSVGS 475
           +  +           P+     RD+                   +F    W  +   VG 
Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRREGGRSFDNQDWDTYQFQVGR 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG-VDLLRRTVKLDKGIQLK 534
           +Q  + + ++  L    G+ + SIGAI++    T+V++      D   +  KL   I+ K
Sbjct: 487 EQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSDTAGKLRKL--RIRQK 544

Query: 535 YLGGEKPDFRGYKSS 549
            +     DF  ++  
Sbjct: 545 QVDAVVCDFNDFREP 559


>gi|310829374|ref|YP_003961731.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
 gi|308741108|gb|ADO38768.1| hypothetical protein ELI_3819 [Eubacterium limosum KIST612]
          Length = 547

 Score =  276 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 164/551 (29%), Positives = 279/551 (50%), Gaps = 17/551 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  I + +  A+ + G+V++T +QE  +   +   D++  +QTG+GKT+AF +   
Sbjct: 1   MKFRELEINEQLLRAIDDMGFVDMTEIQERAIPRLMEGGDLIGKSQTGTGKTMAFAIPAI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  E         P  L + PTRELA+QV  E   +   +  +  V   GG S+  + 
Sbjct: 61  EKIDPE------LRKPQVLVLLPTRELALQVSEEFRKVLKYSHSIKVVAVFGGASIENQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL++GA IVVGTPGR+ DH+R K L  + L   VLDEADEML++GFR+DIE ILD+   
Sbjct: 115 RDLKSGAQIVVGTPGRVMDHMRRKTLKFNALTMAVLDEADEMLNMGFREDIELILDAVDH 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   I  +A+ YQK+   + I+ +      I+ +   ++  ++  A+  +
Sbjct: 175 DVQTVLFSATMPKPILKIAETYQKNPTMIEISPKTMVAPSIEQKYFNISDQNKFEALTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  + +++FC+T+  V   T+ L E  + V  + G++ Q  R N L+    GR ++ 
Sbjct: 235 LDVYKPQRSLIFCNTKHYVDEITENLQELGYSVDKIHGDMRQVSRLNVLKRFSQGRLKIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+++V + ++  N E  +HR GRTGRAG+ G+S+ +     Q +  +
Sbjct: 295 VATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARSRDQFKLRK 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAK--HDPEK 415
           +      S+  +  P+ E I +       +   L  +  + +    +   L +  ++ E 
Sbjct: 355 ITDYTKKSIERDLIPTSEVINDIKIAHFKERFKLKAEKGELERYIAIIQELEEKGYEAEF 414

Query: 416 IAAGFLR----IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           IAA  L+    +  A     E          R+R     R  K G G     + +    +
Sbjct: 415 IAAVLLQAQLPLSDAEDLNTEFKKRGRREGRRERDGKRRREVKGGKGKSFGPEKTKRLFI 474

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDK 529
           SVG K K + R ++  +C    I   ++G I +    TFV+V  D    + + +  K+ K
Sbjct: 475 SVGEKDKVQKRDILGAICGECNIASSTVGNIDMYNKFTFVDVDVDVAKKVEKKLNGKMIK 534

Query: 530 GIQLKYLGGEK 540
             ++K    +K
Sbjct: 535 DHKVKVEISKK 545


>gi|60679730|ref|YP_209874.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|253564478|ref|ZP_04841935.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265764859|ref|ZP_06093134.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|60491164|emb|CAH05912.1| putative RNA helicase dead-box protein [Bacteroides fragilis NCTC
           9343]
 gi|251948254|gb|EES88536.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263254243|gb|EEZ25677.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301161192|emb|CBW20730.1| putative RNA helicase dead-box protein [Bacteroides fragilis 638R]
          Length = 647

 Score =  276 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 169/592 (28%), Positives = 279/592 (47%), Gaps = 33/592 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 12  MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 71

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 72  LIQKINVKN------RIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ +  VV+DEADEML++GF D I  IL   
Sbjct: 126 QIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINAILADV 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY  +A  + I  +N   S++ +    V   D+  A+ 
Sbjct: 186 PQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDKYAALK 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 246 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNIQ 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 306 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 365

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ D   L+ ++ +E+ + D +      L  
Sbjct: 366 REIERIIGKKFIAGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDINDFMPEIYRKLEW 422

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  V    R     ++ + G  SR    G +   
Sbjct: 423 LSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAGKS-REGKSSRQAEPGYTRLF 481

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +  + +F EV       + + +     
Sbjct: 482 INLGKMDNFFPHELITLLNNNTR-GRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW 540

Query: 528 -DKGIQLKYLGGEKPDFRGYKSS-------GFKSKNSQDGATKRFKRFKGAS 571
             + + ++  G E       +         G + ++S   A ++ +R KG+ 
Sbjct: 541 NGRKVTVEVAGEEASTEHKGRGKRNEGNDQGGRGRSSAPSADRK-ERGKGSK 591


>gi|255530578|ref|YP_003090950.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343562|gb|ACU02888.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 625

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 152/537 (28%), Positives = 273/537 (50%), Gaps = 16/537 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           I   +  A+ + G+ N T +QE  +   L    D +  AQTG+GKT AFGL L   +  +
Sbjct: 10  ISDDVVNAVKDLGFENPTPIQEQSIPVLLEGNNDFVGLAQTGTGKTAAFGLPLLELIDFK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           +++      P AL + PTREL +Q+  +++     T     V   GG ++ ++ R+++NG
Sbjct: 70  SNK------PQALILCPTRELCLQITSDIKNFSKNTSGANVVAVYGGANIMQQLREIRNG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGR+ D I  K ++ +++K VVLDEADEML++GF++DI  IL ++P  ++  +
Sbjct: 124 VQIVVATPGRMLDIIGRKAIDFTNVKYVVLDEADEMLNMGFQEDINDILSTTPDDKKTWL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +AKNY    V + + ++N  + +I++   +V   D+  A+  I+ ++  
Sbjct: 184 FSATMPPEVRRIAKNYMDSPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDFNPE 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC T+       + L +  +   AL G+LSQQ+R   +Q  RD   ++ IATDVA
Sbjct: 244 IFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRDRNMQLLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+  L    E+  HRSGRTGRAG+ G+S+ ++      +  ++ R   
Sbjct: 304 ARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIVNSKEIGKIRQIERIIG 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
                   P+   + E+    ++     ++  +   ++ +  ++   A+   E +   F 
Sbjct: 364 KQFTKAALPTGFDVCEKQLFALVHKVHNVEVNENQIEQYIPRIMDEFAELSKEDVIKRFA 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            +         +  P  L S  D   +     + G       +G +   +++GS      
Sbjct: 424 SLEFNRFLEYYKNAP-DLNSSTDERGERGERGERGERGSRTSEGYTRLFINLGSVDDFTR 482

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKGIQLK 534
             L+  +C +  I+ ++IG I ++   +F EV    V+ L    K     ++G++++
Sbjct: 483 GDLLSFVCNNGKISGKAIGKIDLKGVYSFFEVENATVESLFNNFKGVEFNNRGVRIE 539


>gi|218258510|ref|ZP_03474866.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225386|gb|EEC98036.1| hypothetical protein PRABACTJOHN_00521 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 168/605 (27%), Positives = 275/605 (45%), Gaps = 45/605 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +            P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKIDVTT------YQPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G H+VV TPGRL D +  K +N+S +K V++DEADEML++GF D I  IL   
Sbjct: 115 QIKTLKRGVHVVVATPGRLLDLMNRKTVNLSLVKNVIMDEADEMLNMGFTDSINAILAEV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I  + K Y K+   + I ++N  + +I     +V   D+  A+ 
Sbjct: 175 PENRNMLLFSATMPKEIAAITKRYMKNPKEIVIGNKNEGNKNIRDIYYMVRAQDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+S+ +     + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  N        PS  AI E+    ++     ++ ++ +E+++  ++      L  
Sbjct: 355 REIERIINKKFEKGEIPSGSAICEKQLFNLVDQ---IEKVKVNEEEIASLMPQIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D E I    + +    +    +     +    +R     R  +    +    +G S F 
Sbjct: 412 LDKEDIIKRVVSLEFNRMIDYYKDAD-EIQQVDERSARSERGERGERRAYVAEEGYSRFF 470

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---- 526
           L+ G         L+ ++       +  IG I ++ + +F EV       +  ++     
Sbjct: 471 LNFGKADGLYPNQLIELV-NKCVPGKVRIGKIDLRENFSFFEVEEGEAQRVMNSMNGFEV 529

Query: 527 LDKGIQLKYL---------------GGEKPD-----FRGYKSSGFKSKNSQDGATKRFKR 566
             + I ++                 GG + D      RG K SG +S +  D A ++ +R
Sbjct: 530 DGRRISVEPAQGKKEEGGRGGKRSYGGRRSDDGYKGKRGSKDSGRRSNDRSDRAFRKDER 589

Query: 567 FKGAS 571
                
Sbjct: 590 DSNRP 594


>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 560

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 152/551 (27%), Positives = 266/551 (48%), Gaps = 29/551 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+  GY   + +Q   +   L   D++  AQTG+GKT AF L L S +    
Sbjct: 13  LHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKIDPAK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E    +   V  V   GG  +  + + L+ GA
Sbjct: 73  ------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKALRMGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R     +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + ++   + IA++ +  S I+   +++    + NA++ +L      
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    F+  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK--HDPEKI----- 416
            V     P+ + + +   +++     PL  D+ +    +++D L A     P  +     
Sbjct: 367 KVGEVKLPNAQQVLDARIKKLTSSLAPLVADA-EASHGELLDRLTADIGCSPRALAAALL 425

Query: 417 -------AAGFLRIHRAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  A     + R     P     P            +   ++         +G   
Sbjct: 426 KKATNGQALDLASVEREQPLVPGVGGAPRERRERDGDRGGERGEYRERRAPLPLAEGRVR 485

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RT 524
              ++G++    A+ L+  +    G+ R++IG I+++   + VE+  DG+D L      T
Sbjct: 486 CRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLDRLLGKLKDT 545

Query: 525 VKLDKGIQLKY 535
               K ++L+ 
Sbjct: 546 RVAGKALKLRR 556


>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 529

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 152/527 (28%), Positives = 259/527 (49%), Gaps = 25/527 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I + + E GY   T +Q   +      +D++  AQTG+GKT AFG+ +   +  +
Sbjct: 11  NIKKDILKGILELGYEVPTPIQAQAIPRLYAGEDIIGQAQTGTGKTAAFGIPMLEKINPQ 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
                    P  L +APTREL++QV  E+       +G       GG  + R+ + L+ G
Sbjct: 71  Q------KTPQVLILAPTRELSMQVADEIRKFSKYLSGAKSIAIYGGQPIDRQIKALKQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +IVVGTPGR+ DHIR K L +  +  +VLDEAD+MLD+GF DDIE IL  +P +R+ +M
Sbjct: 125 VNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQMLDMGFSDDIEAILQETPSERQTVM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +AK Y K+  +V +  +      I      V   ++ +A+  IL    +
Sbjct: 185 FSATMPKEIEEIAKKYMKNPKKVKVVHKELTVPKISQYYFEVRPHEKLDALCRILDMENS 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+  V    + L    + V  + G+L Q +R   ++  RDG   + IATDVA
Sbjct: 245 ELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDLKQSQRDRVMKKFRDGTLDLMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++LV++ ++  + E  +HR GRTGRAGR+G++  ++     R  + L     
Sbjct: 305 ARGIDVDDVDLVVNYDVPEDFEYYVHRIGRTGRAGREGLAYTLVTGKQIRTLKALEAYIK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +  +P P++  I E+  + I ++ +         +   +V+ L  ++    +AA  L+
Sbjct: 365 GKIKRKPIPTINDIVEKKKEMIGKEIIGNIEKGGLSEYAAIVENLSEEYSSIDVAAALLK 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +        T  ++   +                  +        +++G K  A+  
Sbjct: 425 MIMSQNETDAFETAKNITEKK----------------AKSEGSMVRMFVNIGKKHGAKPG 468

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            ++  +   SGI+   +G I +    TFVEV     D +  ++  ++
Sbjct: 469 DILGAISGESGISGDLVGVIEMYDKFTFVEVPEHIADRVLDSMNRNR 515


>gi|253568946|ref|ZP_04846356.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|251840965|gb|EES69046.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 647

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 171/583 (29%), Positives = 278/583 (47%), Gaps = 30/583 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITP--VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              E +    +                  +    R+R   DSR      GSR    G + 
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRDREEIETPTDIRERNTRDSRE----RGSRKAAPGFTR 467

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL- 527
             +++G         L+ +L  ++   R  +G I +  + +F EV       + + +   
Sbjct: 468 LFINLGKMDSFFPSELISLLNSNTR-GRIELGRIDLMKNFSFFEVEEKEAQNVVKALNRA 526

Query: 528 ---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
               + + ++  G E  + R    S  +    +   +   KR 
Sbjct: 527 NWNGRKVSVEVAGEETGEGRRGSGSAERRGGKRPFGSSSEKRG 569


>gi|319940808|ref|ZP_08015147.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
 gi|319805690|gb|EFW02471.1| DNA/RNA helicase, superfamily II [Sutterella wadsworthensis
           3_1_45B]
          Length = 601

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 166/581 (28%), Positives = 260/581 (44%), Gaps = 18/581 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  +L+  G+   T +QEA +   L   DVL  A TG+GKT AF L L
Sbjct: 1   MADFAELGLSPQLVSSLTALGFEEPTPIQEAAIPAILAGSDVLGQAATGTGKTAAFALPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   +       P+ L + PTREL +QV           G++V    GG    R+ 
Sbjct: 61  IERWALGKEPSD----PVILVLTPTRELCLQVSESFHSYGRDAGIIVTPIYGGQEYGRQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+VV TPGR  DHI    L +  +KAVVLDEADEMLDLGF D+++ I ++ P+
Sbjct: 117 RSLKRGTHVVVATPGRALDHINRGTLKLDAVKAVVLDEADEMLDLGFADELDAIFEALPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAI 235
             +  +FSAT+ P I  +A  + K+ VR+ IA E         +   A +V  + R  A+
Sbjct: 177 GVQTALFSATLPPRIAKIADEHLKNPVRIAIAKEETPEGEAPRVPQIAYIVGRNYRTAAL 236

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL     + AI+F  TR  V   T+ L    + V AL G L Q  R   ++  R G+ 
Sbjct: 237 GRILDLEDPELAIIFARTRNEVDELTEALRVRGYSVEALHGGLDQPTRDRVMRNARSGKI 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVAARGIDL +L  VI+  + ++ E  +HR GRTGRAGR G ++ ++     R 
Sbjct: 297 DAIVATDVAARGIDLENLTHVINFGIPASYETYVHRIGRTGRAGRTGTAITILEPREHRH 356

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              L R     +     PS   ++ +  +  R     +           +V+ L  +HDP
Sbjct: 357 IRALERATRSKIEIRTVPSATDVQAKRLEVTRGAIAEILAQGGLERYNVIVEALCEEHDP 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            ++AA  +R+        ++   +      RDR     R  +      +  +G +   + 
Sbjct: 417 IEVAAAAVRLALESEGTNDDDMEIPAFGDRRDRRERSERPERPRRERGEPEEGMTRLFIG 476

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLD 528
            G         ++  +   + ++ + IGAI +    T  EV +       D L+      
Sbjct: 477 AGRMSGVRPGDIVGAIANEANVSSRQIGAIDISDRFTLAEVDSAVAQQVIDALQGVRFKG 536

Query: 529 KGIQLKYLGGEKPDFRGYKSSG--FKSKNSQDGATKRFKRF 567
           + I +K   G   + R  +     F+ +   D   +  ++ 
Sbjct: 537 RPITVKLDQGAPREERSDRGRSDRFEREGRNDRYDRPERKR 577


>gi|325299227|ref|YP_004259144.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324318780|gb|ADY36671.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 618

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 173/582 (29%), Positives = 280/582 (48%), Gaps = 25/582 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAPEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P AL + PTREL +Q+  +L       T + +    GG S+  
Sbjct: 61  LIQKIDVGN------RVPQALILCPTRELCLQIAGDLNDYSKYITDLKIIPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G HI+V TPGRL D I  K   +  ++ VV+DEADEML++GF D I  IL+  
Sbjct: 115 QIKSLKKGVHIIVATPGRLIDLIERKVAKLETIRDVVMDEADEMLNMGFTDSINAILEKV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  LMFSAT+SP I+ +AK Y +DA  + I ++N    ++ + A +V   D+  A+ 
Sbjct: 175 PEDRNTLMFSATMSPEISRIAKTYLRDAKEITIGTKNEGTKNVHHVAYIVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RVVDFYPMIYGIIFCRTRLETQEIADKLIQDGYNADSLHGELSQAQRDLVMQKFRQRHLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G+S+ ++    + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVINYGLPDDVESYTHRSGRTGRAGKTGISIAIMNLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM------VDVLLAK 410
           +++ R  N     E  P+ +AI E+   +++ D   ++ ++ DE+++      +   L  
Sbjct: 355 KQIERILNKKFSVETLPTGQAICEQQLIKLVDD---IEKVKVDEEEIEAFLPGIYRKLEW 411

Query: 411 HDPEKI-----AAGFLRIHRAGLCAPEEITPVS-LVSGRDRFRDDSRAFKVGGGSRDNFK 464
              E +     +  F R       APE   P S       + +      +    SR   K
Sbjct: 412 LSKEDLIKRVVSMEFNRFLDYYKNAPEIDQPSSNEKGKDKKEKKKGERPERRERSRKAEK 471

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
           G +   +++G         ++ ++ R+    R  +G I +  + +F EV       + R 
Sbjct: 472 GYTRLFINLGKTDGFFPNQVIELINRNLKKERIEVGRIDLMQNFSFFEVIESQASKVVRA 531

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
           +        K +     +  G    G K +  +   TK  + 
Sbjct: 532 LNKTTYNGRKVVVEVASENEGKSDKGGKKRVKETKKTKSRRE 573


>gi|124002116|ref|ZP_01686970.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123992582|gb|EAY31927.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 571

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 151/538 (28%), Positives = 261/538 (48%), Gaps = 22/538 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M+ FE   +   I +A+ E G+   T +QE  +   L E+ D+L  AQTG+GKT AF L 
Sbjct: 1   MQTFEEIGLRSEILQAVQELGFEKPTPIQEQAIPYLLTEETDLLAFAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L  ++  ++ +        AL + PTREL +Q+ R+++       +      GG S+ ++
Sbjct: 61  LLESIDPDSKQI------QALILCPTRELCLQIARDIQSFAKFMKIRTTAVYGGASIDKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G HIVVGTPGR  D I+ K L +  ++ +VLDEADEML++GF+ +++ IL ++P
Sbjct: 115 IDALKRGVHIVVGTPGRSLDLIKRKKLKLEQIQWLVLDEADEMLNMGFKQELDAILATTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+++ L+FSAT+   +  +A+ Y     ++++   N    ++ +   +V   DR  A+  
Sbjct: 175 KEKQTLLFSATMPQELIRIAEQYMHQPKKISVGQRNSGAKNVSHEFYVVQPRDRYQALKR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I   +     IVFC TR         L +  +   AL G+LSQ +R + +   R    ++
Sbjct: 235 IADINPHIYGIVFCRTRRETKDIANKLIQDGYNADALHGDLSQAQRDHVMGRFRSRHLQI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ ++  VI+  L  + E  +HRSGRTGRAG+ G+S+ +I      + +
Sbjct: 295 LVATDVAARGLDVDEITHVINFNLPDDLEVYIHRSGRTGRAGKTGVSLLIIGGREAGKIK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPE 414
            + R+       +  P+ + I E     ++     ++  + +       V   L     E
Sbjct: 355 TIERKIGKKFDRKQIPTSQEICENRLLSLMDKVKEVNVNEEEIAPYLPHVYDKLESLSRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPV-------SLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           ++   F+           +  P            G  + R+  R  K  GG+R +F   S
Sbjct: 415 ELIKHFVSYEFNRFLEYYKNAPDLNAATRRDRDRGDRKERNGDRKDKKRGGNRIDF---S 471

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            F +++GSK +   + L+  +     +    +G I +Q   +F E+     D L    
Sbjct: 472 RFFINLGSKDELNPKNLLSFIDSQPSLKNVEVGKIDIQKSFSFFEIDKRYEDQLLSAF 529


>gi|325859866|ref|ZP_08172996.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|327312944|ref|YP_004328381.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|325482792|gb|EGC85795.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|326946277|gb|AEA22162.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 628

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 165/589 (28%), Positives = 269/589 (45%), Gaps = 23/589 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+SE G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       + +    A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 61  LLQRID------TGSKDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIET 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++G  I+V TPGRL D +      +  +  VVLDEADEML++GF++ I  IL   
Sbjct: 115 QIHQLRHGVQIIVATPGRLIDLMHRGKARLDKVSNVVLDEADEMLNMGFQESITEILTGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R    +
Sbjct: 235 RLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + RE     V    P+ E I ++   + + D L  D  +       K ++      D 
Sbjct: 355 RNIEREIGKEFVDGTLPAPEEICKKQLFKTMDDILKTDVDEEQIEPYMKDINRQFEYIDK 414

Query: 414 EKIA-----AGFLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           E I      A F R       APE   P S       R            G R    G  
Sbjct: 415 EDIIKKIVTATFGRFLDYYKNAPEIEKPSSRSSRETGRGGRGEGKSGRSRGPRKAESGYR 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         +M  + ++     Q +G I +    +++EV       + R +  
Sbjct: 475 RLFINLGKTDGFYPGEVMQFINKNVH-GHQEVGHIDLLSKQSYIEVPEQDAQKVMRALDG 533

Query: 528 D--KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG-ATKRFKRFKGASKN 573
              KG +++    ++              +  +G    R ++ +G  + 
Sbjct: 534 TTYKGRKVRCNDADEGGHGRSGGGRGGYGSHGEGRKDSRERKGRGRRQQ 582


>gi|227496195|ref|ZP_03926501.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
 gi|226834278|gb|EEH66661.1| superfamily II helicase [Actinomyces urogenitalis DSM 15434]
          Length = 762

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 157/608 (25%), Positives = 266/608 (43%), Gaps = 46/608 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +A+++ GYV  T++Q   +   L  +DV+  AQTG+GKT AFGL L  
Sbjct: 123 TFADLGLPADLLKAVTDMGYVTPTAIQREAIPVLLSGRDVVGVAQTGTGKTAAFGLPLLD 182

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            + A +          AL +APTRELA+Q    +  + +++  +  V   GG     +  
Sbjct: 183 AVDARDGEV------QALVLAPTRELALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIG 236

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ D I    L +  ++  VLDEADEML +GF +D+E I  S P +
Sbjct: 237 ALKSGAQVVVGTPGRVIDLIDKGALRLGAVRYFVLDEADEMLRMGFAEDVETIAASLPAE 296

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT+ PAI  +A+ +  D  RV ++ ++     +     +V    +  A+  +L
Sbjct: 297 RRTALFSATMPPAIQAVARQHLSDPARVEVSRQSSTVDTVHQTYAVVPFRHKVGAVSRVL 356

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+ AIVF  T+++       LA    Q  A+SG++ Q+ER   ++ +R G   V +
Sbjct: 357 ATTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERERLVERLRSGTLDVLV 416

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  + LV++ ++    E  +HR GRTGRAGR G +V  +    + +  ++
Sbjct: 417 ATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQI 476

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL------FLDSIQGDEKKMVDVLLAKHDP 413
            R     +     PS   +    A  +L           L+      +     L  +   
Sbjct: 477 ERLTGTRLEEITLPSPADVSRHRAATLLDKAAQRHERGRLEMYTEMVQDKAAELEIEVSD 536

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS----------------------- 450
                  L +  AG    +E         R     DS                       
Sbjct: 537 LAATLLALAVGDAGPKTWQERKEEPRQRVRREENVDSEGTFVSATFEGGRDRGERGRGRD 596

Query: 451 ----RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
               +     GG R      + + + VG + +     ++  L    GI+   IG I +  
Sbjct: 597 RIEGKPGASRGGRRHEDGTGTVYRVEVGHRDRVLPGAIVGALANEGGISGSDIGKIDILQ 656

Query: 507 DLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
             + VE+    S + +  + R     + +++    G    + G  ++  +    +    +
Sbjct: 657 SFSLVEIHTPLSDEQLQAMGRATFGGRELRIHPDQGPGHGWDGSDNAPSEHSQRRAERPR 716

Query: 563 RFKRFKGA 570
           R    +G 
Sbjct: 717 REDGGRGG 724


>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 560

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 148/551 (26%), Positives = 262/551 (47%), Gaps = 29/551 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+  GY   + +Q   +   L   D++  AQTG+GKT AF L L S +    
Sbjct: 13  LHPNILAALTAVGYEEPSPIQSQAIPVILAGHDMIGQAQTGTGKTAAFALPLLSKIDPAK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E    +   V  V   GG  +  + + ++ GA
Sbjct: 73  ------REPQVLILAPTRELALQVATAFETYSKQMPGVNVVAVYGGAPMGPQLKAIRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R     +S ++ +VLDEADEML LGF DD+E I ++ P+ R+ ++F
Sbjct: 127 QIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEIIFEAMPESRQSVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ + ++   + IA++ +  S I+   +++    + NA++ +L      
Sbjct: 187 SATLPHSIRAIAEKHLREPQHIKIAAKTQTVSRIEQAHLMIHADQKTNAVLRLLEVEDFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    F+  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLASALEAKGFKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKI----- 416
            V     P+ + + +   +++      L    ++  GD    +   +    P  +     
Sbjct: 367 KVGEVKLPNAQQVLDARIKKLTSSLAPLVADAEASHGDLLDRLTADIG-CSPRALAAALL 425

Query: 417 -------AAGFLRIHRAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  A     + R     P     P            +   ++         +G   
Sbjct: 426 KKATNGQALDLASVEREQPLVPGVGGAPRERRERDGDRGGERGEYRERRAPMPLAEGRVR 485

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR----RT 524
              ++G++    A+ L+  +    G+ R++IG I+++   + VE+  DG+D L      T
Sbjct: 486 CRTALGTRDGIAAKNLLGAILNEGGLAREAIGRIQIRETFSLVELPEDGLDRLLGKLKDT 545

Query: 525 VKLDKGIQLKY 535
               K ++L+ 
Sbjct: 546 RVAGKALKLRR 556


>gi|260591877|ref|ZP_05857335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260536161|gb|EEX18778.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 657

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 155/538 (28%), Positives = 259/538 (48%), Gaps = 20/538 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           +K FE +   + I  A+SE G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 25  LKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 84

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       + + +  A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 85  LLQRID------TSSKSTQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIDT 138

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++G  I+V TPGRL D +      +  ++ VVLDEADEML++GF++ I  IL   
Sbjct: 139 QIHQLRHGVQIIVATPGRLIDLMHRGKARLDQVRNVVLDEADEMLNMGFQESITEILTGV 198

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 199 PEDRNTLLFSATMSRDVEKVAKGYLHDYKEIVVGSRNEGAESVNHIYYMVNARDKYLALK 258

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R    +
Sbjct: 259 RLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQ 318

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 319 ILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKV 378

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + RE     +    PS E I ++   + + + L  D  +       + ++      D 
Sbjct: 379 RNIEREIGKEFIDGTLPSPEEICKKQLFKTMDNILKTDVDEEQIAPYMEDINRQFEYIDK 438

Query: 414 EKIA-----AGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSS 467
           E +      + F R       APE   P +  S  + R            G+R   KG  
Sbjct: 439 EDLIKKIVTSTFGRFLDYYKNAPEIEKPSARSSREEGRSGRSEGRATRSRGARKAEKGFK 498

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
              +++G         +M  + ++     Q++G I +    +++EV       + + +
Sbjct: 499 RLFINLGKNDGFYPGEVMQFINKNMN-GHQAVGHIDLLAKQSYIEVPEQDAQKVMKAL 555


>gi|288929803|ref|ZP_06423646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328904|gb|EFC67492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 636

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 158/597 (26%), Positives = 264/597 (44%), Gaps = 48/597 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK F+ +   + I  A+ E G+     VQE ++   L    DV+  AQTG+GKT A+G+ 
Sbjct: 1   MKTFKELGVSEPICRAIEELGFEQPMPVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +  E           AL ++PTREL +Q+  +L         +  V   GG S+  
Sbjct: 61  VLQKVNPEE------KHTQALILSPTRELCLQIADDLADFSKYVQGLHVVPVYGGASIEM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGRL D ++     + ++  VVLDEADEML++GF + I  I +  
Sbjct: 115 QIRQLRKGAQIIVATPGRLIDLMKRGVAQLDNVNNVVLDEADEMLNMGFTESINAIFEGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  I  +AKNY  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PADRNTLLFSATMSREIEKIAKNYLNDYKEIVVGSRNEGAEKVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AI+FC T+         L    +   AL G+LSQQ+R   +Q  R+   +
Sbjct: 235 RLVDFYPRIFAIIFCRTKLETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  V++  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVVNYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERSKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + +      V    P+ + I  +   + +     +D  + +     + ++      D 
Sbjct: 355 RAIEKIIQKEFVDGTLPTAKEICSKQLYKAMDAISKVDVNEEEIAPFLEEINRHFEYIDK 414

Query: 414 EKIAAGFLRIHRAGL-----CAPEEITPVSLVSGRDRFR-------------DDSRAFKV 455
           E +    + +           APE   P    + R+  R                R  + 
Sbjct: 415 EDLIKKIVSMTFGRFLDYYANAPEIEKPSLKRNEREGKRAERGGGRDAQRGARSKRTERG 474

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
             G+R    G     +++G         +M  + R+    R ++G I +    +++EV  
Sbjct: 475 ARGARKAEAGYRRLFVNLGKDDGFYPGEVMQFINRNVQ-GRVAVGHIDLLGKFSYIEVPE 533

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
                +           ++ L G       YK    +  ++ +G   R    KG  K
Sbjct: 534 GDASRV-----------MQGLSGAS-----YKGRDVRCNDADEGGHGRSAAAKGGRK 574


>gi|198274009|ref|ZP_03206541.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
 gi|198273087|gb|EDY97356.1| hypothetical protein BACPLE_00145 [Bacteroides plebeius DSM 17135]
          Length = 629

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 159/536 (29%), Positives = 261/536 (48%), Gaps = 16/536 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   Q I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSQEIRKAIEEMGYENPMPVQEEVIPYLLGNGNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P AL + PTREL +Q+  +L       T + +    GG S+  
Sbjct: 61  LIQKIDVKN------CVPQALVLCPTRELCLQIAGDLTDYSKYITDLKILPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ G HI+V TPGRL D +  K   +  ++ VV+DEADEML++GF D I  IL++ 
Sbjct: 115 QIRSMKRGVHIIVATPGRLIDLMERKVARLETVRDVVMDEADEMLNMGFTDSINTILENV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  LMFSAT+SP I  +AK Y  DA  + I ++N    ++++ A +V   D+  A+ 
Sbjct: 175 PNDRNTLMFSATMSPEIARIAKTYLHDAKEITIGTKNEGSKNVNHVAYIVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RVVDFYPQIYGIVFCRTRKETQEIADKLIQDGYSADSLHGELSQAQRDLVMQKFRQRHLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VI+  L  + E+  HRSGRTGRAG+ G+S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDSLTHVINYGLPDDIESYTHRSGRTGRAGKTGISIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---P 413
             + R           P+ + I E+   +++ D   +   + + +  +  +  K D    
Sbjct: 355 REIERIIKKKFEVSELPTGKEICEQQLIKVIDDIEKVKVSEEEIETFLPGIYRKLDWLSK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS---RDNFKGSSWFS 470
           E +    + +         +  P       +  + +++  + G      R   KG +   
Sbjct: 415 EDLIKRVVSLEFNRFLDYYKNAPEIEQPKANDKKAETKESRKGDKEKVGRKAEKGYTRLF 474

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           L++G         ++ ++ R+    R  IG I +  + +F EV  +    + + + 
Sbjct: 475 LNLGKTDGFYTNQIIDLVNRNLKKERIQIGRIDLMQNFSFFEVIQEQAPQVIKALN 530


>gi|282859050|ref|ZP_06268186.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
 gi|282588218|gb|EFB93387.1| putative ATP-dependent RNA helicase DeaD [Prevotella bivia
           JCVIHMP010]
          Length = 625

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 160/546 (29%), Positives = 264/546 (48%), Gaps = 27/546 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I +A+ E+G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVCEEIRKAIEEQGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       +      A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 61  LLQRID------TTTKETQAIVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGTSIET 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + ++L+ G  I+V TPGRL D +      + +++ +VLDEADEML++GF++ I  IL   
Sbjct: 115 QIKELKRGVQIIVATPGRLIDLMHRGKAKLENVRNMVLDEADEMLNMGFQESITEILSGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSREVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RLVDFYPKIYAIIFCRTKLETQEVADKLIKDGYNAEALHGDLSQQQRDLTMQKFRSHLTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ +L  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVTELTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKYKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
             + R  +   +    PS E I ++   + + D L  D  +       K +       D 
Sbjct: 355 RNIERVISKEFIDGTLPSAEEICKKQLFKSMDDILKTDVDEEQIAPYVKDIKRQFEYIDK 414

Query: 414 EKIAAG-----FLRIHRAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVG------GGSR 460
           E +        F R       APE   P +     DR   R+DSR  + G       GSR
Sbjct: 415 EDLIKKIVTVTFGRFLDYYKNAPEIEKPTTQNGRADRRGGRNDSRGGRGGERSDRSRGSR 474

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
               G     +++G         +M  + ++    RQ++G I +    +++EV       
Sbjct: 475 KAEAGFKRLFINLGKDDGFYPGEVMQFINKNVH-GRQAVGHIDLLKKQSYIEVPERDAQR 533

Query: 521 LRRTVK 526
           +   + 
Sbjct: 534 VMDALN 539


>gi|301165769|emb|CBW25341.1| putative RNA helicase dead-box protein [Bacteriovorax marinus SJ]
          Length = 591

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 153/586 (26%), Positives = 274/586 (46%), Gaps = 25/586 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ +  AL ++GY + T +QE  +   L ++ D +  AQTG+GKT AF L L + +   
Sbjct: 8   LPESLLRALEDKGYKSPTDIQEKAIPLLLEKDTDFVGQAQTGTGKTAAFSLPLLAKID-- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNG 124
               S +    A+ ++PTRELA Q+  E++       + +    GGV +  + R   +  
Sbjct: 66  ----SKSGDVQAIVLSPTRELANQITEEMKSFCKYEKIKILSVYGGVPLDGQIRTLKKGR 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D I+   L + + K  VLDEADEMLD+GF DD++ IL     K++  M
Sbjct: 122 PQVVVGTPGRVLDLIKRGVLKLENAKLAVLDEADEMLDMGFIDDVKTILSELGDKKKTWM 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           +SAT+  AI +L K+Y  +   + I  +   + DI+ +  L+   +   A+  IL     
Sbjct: 182 YSATMPKAILSLIKSYLNEPEVIKIEKKTLSNEDIEQKYFLIKRGNLGEAVCRILDSLTD 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+    + +       F   AL G++SQ +R   ++  +  + ++ + TDVA
Sbjct: 242 YYGIVFCRTKIDAKKLSDEFNYRGFPSDALHGDMSQTQRDLTMRAFKKKKVKLLVCTDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+  L  + E+ +HR GRTGRAG+KG +  VI  + + R   L R  N
Sbjct: 302 ARGIDVDNLTHVINYGLPQDLESYVHRIGRTGRAGQKGCAYTVIDSSEKFRIRMLERLMN 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKI-AAGFLR 422
             +     PS++ I++   +  +    F+ + ++  E       + K   E++     L+
Sbjct: 362 TKIELGTLPSIDEIKKALVKNEVSKLEFVAEKLESSENLDSSFSIFKESLEEMEKEALLK 421

Query: 423 -----IHRAGLCAPEEITPVSLVSGRDRFRD------DSRAFKVGGGSRDNFKGSSWFSL 471
                + +  +    + + + L  G +R         D R      G      G + F +
Sbjct: 422 VMFNYMFKKNMDRYSQKSSIELSKGSERGDRNSRNNSDRRERPERSGRGRGDNGYARFYV 481

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-- 529
            VG K   + +  +  +  ++G+  + I  + ++   +F EVS    + +    K+    
Sbjct: 482 GVGKKHGVDLKEFLSSVSGATGVAERDIRRVDLKDQFSFFEVSEKYKEKVLLVAKVSAAG 541

Query: 530 --GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             G       G     R  +  G +  ++ +  + R    + + ++
Sbjct: 542 HTGTLEPTKSGPSTSRRDSRGGGPRRSSNGNRKSFRTSGKERSQRS 587


>gi|291544767|emb|CBL17876.1| Superfamily II DNA and RNA helicases [Ruminococcus sp. 18P13]
          Length = 555

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 157/563 (27%), Positives = 281/563 (49%), Gaps = 26/563 (4%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +QE  +   ++  D++  + TG+GKT AFG+    ++  E+ R     +   
Sbjct: 1   MGFTEMTEIQEKSIPLMMQGIDLIGRSNTGTGKTAAFGIPAVESISQEDPR-----SVQV 55

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA+Q   EL+ L             GG S+ R+  DL+ GA+IVVGTPGR+ 
Sbjct: 56  LILCPTRELAMQACEELKKLSRFMPWVRPCAVYGGASMDRQIGDLKRGANIVVGTPGRVM 115

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+  + L + +LK V+LDEADEML++GFR+DIE IL   P++R+ ++FSAT+ P I  +
Sbjct: 116 DHMNRRTLKLQNLKTVILDEADEMLNMGFREDIETILSGVPEERQTVLFSATMPPEIMAI 175

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            K +QKD   + IA+++R    I+      A+  + +A+  +L  +  K+A+VFC+T+ +
Sbjct: 176 TKQFQKDPTVIKIAAKHRTVDTIEQYYYETAMGRKTDALRLLLLAYEPKSAMVFCNTKRT 235

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T+ L +   Q   L G++ Q +R+  +   + GR  V +ATDVAARGID+  ++LV
Sbjct: 236 VDELTEALCDKGIQAAGLHGDMKQMQRTQVMNAFKSGRIGVLVATDVAARGIDVNGIDLV 295

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERLFREANVSVVWEPAPSV 375
            + +L  + E  +HR GRTGRAG+ G ++ ++  +        + +     ++ +  P+ 
Sbjct: 296 FNYDLPQDNEYYIHRIGRTGRAGKSGTALTLVSGRRQVFALRDIAKYTKAEIIQKALPTR 355

Query: 376 EAIRERDAQRILQDPLF--LDSIQGDEKKMVDVLLAK-HDPEKIAAGFL--RIHRAGLCA 430
             +  +  Q++         +      +++++ L  + +  ++IA   L  ++  +    
Sbjct: 356 ADLAAKKTQQLHDAVAQACAEQPSSRAEELLNRLTEEGYTAQQIAQVLLEEKLSASLQSI 415

Query: 431 PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
           PE   P  +     R R      KV               +++G +Q+    +++  L  
Sbjct: 416 PEFDAPQPIRREGKRGRSAVTTAKVD--------------INIGRQQRIAPNFILGALVD 461

Query: 491 SSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSG 550
           ++G++ +  G I +    T VEV    +D +  ++   K    K              S 
Sbjct: 462 ATGLSGKDFGKIDIFDQHTTVEVPEAEMDFVIDSLNAGKINGHKVTVKRYEGKETGSRSD 521

Query: 551 FKSKNSQDGATKRFKRFKGASKN 573
           F+ K+  DG  +R +      +N
Sbjct: 522 FRGKSRNDGFNRRPRGRNTDRRN 544


>gi|261250797|ref|ZP_05943371.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
 gi|260937670|gb|EEX93658.1| cold-shock DEAD-box protein A [Vibrio orientalis CIP 102891]
          Length = 660

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 165/621 (26%), Positives = 278/621 (44%), Gaps = 60/621 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   G+V+ T +Q A +   L  KD L  AQTG+GKT AF L L + L    
Sbjct: 13  LNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAFSLPLLNKLDLAQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            +      P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+NGA
Sbjct: 73  RK------PQAIILAPTRELAIQVAAEVKNLGKNIAGLKVLEIYGGASIVDQMRALKNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I    L++  +   VLDEADEML++GF DD+  I++ +P   + ++F
Sbjct: 127 HIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPSSAQRVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P + ++ + + +D   +++A +N     ++ +  +V   ++D A+  +L      
Sbjct: 187 SATMPPMLKSIVERFLRDPETIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLLETEETD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV A
Sbjct: 247 ASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILVATDVVA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    
Sbjct: 307 RGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTIERVTKS 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLA--KHDPEKIAAGFL 421
           S+     P  + + E    ++  +       +  EK  ++V+ L    + D   +AA  L
Sbjct: 367 SMEEIQLPHRDKVAEARLAKLGAELETEKEHKALEKFSELVEKLQESLELDAATLAAILL 426

Query: 422 R----------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--F 469
           +          I    +    E   +     R+  RD             +F    W  +
Sbjct: 427 KRQQGKRPLFYIGEDPMIEAIERDKLRRKDRRENGRDGRDGRDGRREGGRSFNTQDWDTY 486

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTV 525
            L VG +Q  + + ++  L    G+ + SIGAI++    T+V++      +    L++  
Sbjct: 487 QLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGETYVQLPKAMSSETAGKLQKLR 546

Query: 526 KLDKGI---------------------------------QLKYLGGEKPDFRGYKSSGFK 552
              K +                                      GG + +  G +  G++
Sbjct: 547 IRQKQVDAVVCDFNDFREPRRGGGRDGGGRRDGGYRGNRDGNREGGYRGNRDGNREGGYR 606

Query: 553 SKNSQDGATKRFKRFKGASKN 573
                +    R    +G    
Sbjct: 607 GNRDGNREGGRDGNREGGRAR 627


>gi|238787599|ref|ZP_04631397.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
 gi|238724386|gb|EEQ16028.1| DEAD/DEAH box helicase domain protein [Yersinia frederiksenii ATCC
           33641]
          Length = 609

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 158/543 (29%), Positives = 254/543 (46%), Gaps = 47/543 (8%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AQTGSGKT AFGL L   +  E        AP  L +APTRELA+QV   L         
Sbjct: 2   AQTGSGKTAAFGLPLLHNIDPE------LKAPQVLVLAPTRELAIQVAEALTSFSKDIKG 55

Query: 104 VVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V  V   GG     + R L+ G  +VVGTPGRL DH++   LN+S+LK +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E IL   P + +  +FSAT+  AI  + + + K+   V I S      DI   
Sbjct: 116 MGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQV 175

Query: 223 AV-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +     ++ A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 YWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQA 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L+ ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           G ++  +    +R  + + R   +++     P+ + + ER   +          ++  + 
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAQLLSERRLAKFAAK--VSQQLESSDL 353

Query: 402 KMVDVLLAKHDPEK------IAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--------- 446
            M   LLAK  PE+      +AA  L++ +     P  + P +    +  F         
Sbjct: 354 DMYRALLAKLQPEEEFDIETLAAALLKMAQG--ERPLILPPEAPRRPQREFNSRDDRGSD 411

Query: 447 --------------RDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR 490
                         R DSR    +     R +      + + VG     E R ++  +  
Sbjct: 412 RGRDRDRGDSRRDNRSDSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIAN 471

Query: 491 SSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGY 546
              I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R  
Sbjct: 472 EGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRE 531

Query: 547 KSS 549
           + +
Sbjct: 532 RPA 534


>gi|254520792|ref|ZP_05132848.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226914541|gb|EEH99742.1| DEAD-box ATP dependent DNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 526

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 148/537 (27%), Positives = 252/537 (46%), Gaps = 38/537 (7%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+     + +++++ G+   + +Q   +   ++  D++  AQTG+GKT AFG  + + 
Sbjct: 6   FSNLGLKDTLLKSINDLGFEKPSQIQAEAIPVAIQGYDLIGQAQTGTGKTAAFGCGIINH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +       S  S   A+ +APTRELA+QV  EL+ L     + +    GG  +  + R L
Sbjct: 66  I-------SKKSGLSAIILAPTRELAIQVNDELKRLSKYDDLTILPVYGGDPITNQIRAL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   +IVVGTPGR+ DHI+   + +  +K +VLDEADEML++GF DD+E I+   P +R+
Sbjct: 119 KRNVNIVVGTPGRVLDHIKRGTIKLDQIKFLVLDEADEMLNMGFIDDLEDIIKQLPSERQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILR 240
            L+FSAT+   I  LAK Y K   +     +              V+   R  A+  +L 
Sbjct: 179 TLLFSATMPDQIRKLAKRYMKPDAKHISIKKTSMTVSTISQNFFEVSHKTRFEALCRVLD 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    +AI+FC T+  V    + +    + V  + G++SQ  R   L+  ++G     +A
Sbjct: 239 FDTPSSAIIFCRTKKGVDELVEGMQSRGYVVEGMHGDMSQAHRLRTLKKFKEGSLNYLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +  VI+ +L  + E+ +HR GRTGRA R+G++  ++        +++ 
Sbjct: 299 TDVAARGIDVEGITHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYSMLKQIK 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAA 418
                 +  +  P+V  I    ++ IL+D     +     K   +   L  K+D  +I A
Sbjct: 359 SVTKSDISRKNIPTVNDIFNSKSKSILEDVTNTINDSDYSKFIPVATELTQKYDSVEIIA 418

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++            + V      +  R                       LS+G +  
Sbjct: 419 ALIKNKFNDDLLETYTSDVLEAPKSEDIR---------------------LFLSIGRRDG 457

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
              + L+  +  ++ I   SIG I +  + +FV +S D  D +     LDK I +K 
Sbjct: 458 INPKTLVNFIKDTARIRASSIGDIDILENFSFVNISPDVKDKV-----LDKCIGVKL 509


>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 592

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 146/588 (24%), Positives = 273/588 (46%), Gaps = 38/588 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I  A  + G+   T +Q   +   L+  D++  A TG+GKT AFG+    ++   
Sbjct: 12  EVSEDIIRAAHDMGFEETTPIQGKAIPIILQGNDIIAQAPTGTGKTCAFGIPAIESVDTT 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           N++         L + PTREL +Q   EL  L     G+      GG  + R+   L+  
Sbjct: 72  NEKV------QVLILCPTRELVIQTTEELSALAKYKRGIRTLPIYGGQQIDRQIIALKKR 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+VGTPGR+ DH+R   L + HLK ++LDEADEML++GFR+DI+ IL+S P++R+ ++
Sbjct: 126 PQIIVGTPGRIMDHLRRGTLKLEHLKMIILDEADEMLNMGFREDIDVILESVPEERQFVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ AI  +A  YQ + + VN+  +      +    + V  S++   +  ++  +  
Sbjct: 186 FSATLAKAILDIANKYQNNPITVNVVHKELTVPTVKQYYLEVRDSNKVEVLSRLIDANNF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K ++VFC+T+  V    + L    +   +L G++ Q +R N +   R+G   + IATDVA
Sbjct: 246 KLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDMKQLQRDNVMSRFRNGLIDILIATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++ V + ++ S+ E  +HR GRTGRA R+G+S          +   + R   
Sbjct: 306 ARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGVSYTFAAGKELAKLRDIQRYTK 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL-------------FLDSIQGDEKKMVDVLLAKH 411
             +     PS+E I+E     I+ D               F++ +  +   + D   A  
Sbjct: 366 SKIKLIKPPSIEDIQENKLSGIIDDVKAILAEGKLTKYTGFIEKMLEEVGDIEDENYA-- 423

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
              ++AA FL++    +          ++     +  +  A +    +           +
Sbjct: 424 TSLEVAAAFLKMTMDKM----------VMGASAEYSVEDLAARSNYDTSKIDGDFVRLFI 473

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--- 528
           ++G K + +   L+  +  +  I  + IG + +    +F E+    +  +   +  +   
Sbjct: 474 NLGRKDELQVSELVKFIASNCNITGKEIGRVDMLDKFSFFEIPKKHLGDIMANLVGESLK 533

Query: 529 -KGIQLKYLGGEKPDFRG--YKSSGFKSKNSQDGATKRFKRFKGASKN 573
            + + ++    ++        +S+  + +N+ +      +R  G   N
Sbjct: 534 GRRVNIEVANRKQDGRDRQMGRSTSRRQENNGERRGDSNRRQDGNRSN 581


>gi|319900501|ref|YP_004160229.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319415532|gb|ADV42643.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 655

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 168/590 (28%), Positives = 275/590 (46%), Gaps = 28/590 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSAEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +            P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQQINVSK------RIPQSLILCPTRELCLQIAGDLNDYSKYINGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKQGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY  DA  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLHDAKEITIGRKNESTNNVKHVVFCVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---P 413
             + R           P+   I E+   +++ D   +     + +  +  +  K D    
Sbjct: 355 RDIERIIGKKFEQGEMPTANQICEKQLLKVIDDLEKVKVNDEEIETFMPDIYRKLDWLSK 414

Query: 414 EKIAAGFLRIHRAGLCAP----EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           E +    +              E+I   +     +R        + G  +R    G    
Sbjct: 415 EDLIKRMVSHEFNKFLDYYRNREDIETATGSERGERNARGRERGERGSSNRQAEPGYKRL 474

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL-- 527
            +++G         L+ +L +++   R  +G I + P  +F EV       + + +    
Sbjct: 475 FINLGKMDNFFPNELIGLLNKNTR-GRIELGRIDLMPKFSFFEVEEKEAGNVVKALNRAN 533

Query: 528 --DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR--FKRFKGASKN 573
              + + ++  G E     G  + G K +N  +G+++R  + + +G  + 
Sbjct: 534 WNGRKVSVEIAGEES----GNTAHGGKRRNDSEGSSRRGAYGKREGDGRK 579


>gi|169347296|ref|ZP_02866234.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
 gi|169293913|gb|EDS76046.1| hypothetical protein CLOSPI_00011 [Clostridium spiroforme DSM 1552]
          Length = 531

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 152/516 (29%), Positives = 256/516 (49%), Gaps = 26/516 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +   + + +A+ + G+   + +QE  +   L   D +  AQTG+GKT+AFG  L S 
Sbjct: 6   FEQLGLSEEVLKAIKDMGFSKPSQIQEKAIPILLTGVDAIGQAQTGTGKTLAFGSVLLSK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +DRF     P A+ ++PTRELA+Q+  E+  +    G  +    GG  + ++ R +
Sbjct: 66  IKPIDDRF-----PQAIILSPTRELAMQIHEEMNRIGKHNGSKIVCVFGGSDIEKQIRSI 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVVGTPGR+ D +R K L   ++K VVLDEADEML++GF +DIE IL+     R+
Sbjct: 121 KKGVDIVVGTPGRVMDLMRRKVLKFDNVKYVVLDEADEMLNMGFVEDIETILEKVDDARQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            ++FSAT+   I  +A+NY  D  +     S+    + +      V   DR   +  ++ 
Sbjct: 181 TILFSATMPAGIKKIAQNYMHDDFKHVAVLSKQTTATSVKQFYYEVKPKDRFETLCRLID 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  I+FC T+ SV   T+ + +  + V A+ G+L+Q  R N L+  + G     +A
Sbjct: 241 VANIKTGIIFCRTKRSVDEVTEQMQQSNYNVEAMHGDLNQNHRMNTLRKFKKGTINFLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  VI+ EL  + E+ +HR GRTGRA ++G++  +I        +++ 
Sbjct: 301 TDVAARGIDVENVTHVINYELPQDIESYVHRIGRTGRADKEGLAYSIISPKEVSFLKQIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA--- 417
           R    ++     P+++ I E     ++ D    D I     K    L+ + DP  ++   
Sbjct: 361 RVTKSTITKVNVPTLQEIFEARIGALISDVE--DVILAGNHKRFKQLVNEIDPTMLSDFT 418

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L I        +    V       ++               N K  +   L+VG+  
Sbjct: 419 AALLYISYQEQLGYDYQRDVIQEINSKKYDR-------------NNKNYTRLFLTVGTMD 465

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           + +   ++     ++GI +  IG I ++   TFV++
Sbjct: 466 RVKVPQIIDFFITNAGIRKDDIGDIDLKRKFTFVDI 501


>gi|291166137|gb|EFE28183.1| ATP-dependent RNA helicase DeaD [Filifactor alocis ATCC 35896]
          Length = 539

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 160/532 (30%), Positives = 263/532 (49%), Gaps = 8/532 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F   NI + I  AL + G+   T +QE  +      KD++  +QTG+GKT AFG+ +
Sbjct: 1   MKKFTEFNISKEIQMALEQLGFEEATIIQELAIPIATEGKDLIGQSQTGTGKTFAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L  N+         AL I PTRELAVQV  E + L A T +      GG  + ++ 
Sbjct: 61  LDNILQNNNH-----QIQALVICPTRELAVQVSNEFDKLTAFTKIRNIAVYGGEYIDKQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    IV+GTPGR+ DHI  K + + H++ VVLDEADEMLD+GF +DIE IL  + +
Sbjct: 116 KGLKKKVQIVIGTPGRILDHIERKTIKLDHVRFVVLDEADEMLDMGFIEDIENILRETSE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I +L+K Y K+   + + ++      I+   + V  +D+   +  I
Sbjct: 176 ERQTMLFSATMPAEILSLSKKYLKNPEMIRVKNKTMTVDQIEQIYMKVKNADKSEVLSRI 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +K AI+FC+T+  V      +    + V AL G+L QQ+R   L   R+G+  + 
Sbjct: 236 LQLESSKKAIIFCNTKKMVDELVVDMQNRGYAVEALHGDLKQQKRDMVLNRFREGQISML 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D++LVI+ +L    E  +HR GRTGRAG  G S          R  R
Sbjct: 296 IATDVAARGLDIRDVDLVINYDLPIEEEQYVHRIGRTGRAGASGKSYSFAYGRDIERLRR 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + + A   +  E  P  + ++E+   + ++      +    +     V   K     + A
Sbjct: 356 IEKYAKCKIKEESIPRYDKVKEKIIHQYIEGIRSQKNSGDLDFYFNLVSEMKQSGVNLEA 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
               + +  L    +         RDR R    +  +         +G   F L++G   
Sbjct: 416 FLAIMMKNTLNLQNKEKIDYRAYERDRIRAITGQKKEKKSKKYSKERGMVRFELNIGRVD 475

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +     ++  +     I  ++IGAI +  D+++ ++  +   +  + +K  K
Sbjct: 476 RVGPADIVSSVANRCKIPGKNIGAIDILSDVSYFDIKEEYAKIAEKHLKQVK 527


>gi|29348712|ref|NP_812215.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340618|gb|AAO78409.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 647

 Score =  274 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 169/574 (29%), Positives = 275/574 (47%), Gaps = 30/574 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  +V+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIIGKKFIAGEMPTGKQICEKQLIKVIDE---LEKVKVNEEEITDFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITP--VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              E +    +                  +    R+R   DSR      GSR    G + 
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRDREEIETPTDSRERNTRDSRE----RGSRKAAPGFTR 467

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL- 527
             +++G         L+ +L  ++   R  +G I +  + +F EV       + + +   
Sbjct: 468 LFINLGKMDSFFPSELISLLNSNTR-GRIELGRIDLMKNFSFFEVEEKEAQNVVKALNRA 526

Query: 528 ---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
               + + ++  G E  + R    S  +    + 
Sbjct: 527 NWNGRKVSVEVAGEEAGEGRRGSGSAERRGGKRP 560


>gi|325268230|ref|ZP_08134863.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324989372|gb|EGC21322.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 668

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 165/583 (28%), Positives = 266/583 (45%), Gaps = 36/583 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           +K FE +   + I  A+SE G+ +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 36  LKTFEELGVSEEIRRAISELGFEHPMPVQEEVIPYLLGNRNDVIALAQTGTGKTAAFGLP 95

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           L   +       + +    A+ ++PTREL +Q+  +L+        +  A   GG S+  
Sbjct: 96  LLQRID------TGSKDTQAVVLSPTRELCLQIADDLKDFGKYIPHLHIAAVYGGASIET 149

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++G  I+V TPGRL D +      +  +  VVLDEADEML++GF++ I  IL   
Sbjct: 150 QIHQLRHGVQIIVATPGRLIDLMHRGKARLDKVTNVVLDEADEMLNMGFQESITEILTGV 209

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  +  +AK Y  D   + + S N    ++++   +V   D+  A+ 
Sbjct: 210 PEDRNTLLFSATMSRDVERVAKGYLHDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALK 269

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AIVFC T+         L +  +   +L G+LSQQ+R   +Q  R    +
Sbjct: 270 RLVDFYPKIYAIVFCRTKVETQEIADKLIKDGYNAESLHGDLSQQQRDLTMQKFRSHLTQ 329

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 330 ILVATDVAARGLDVNDLTHVINYGLPDDIENYTHRSGRTGRAGKKGTSISIIHSREKHKV 389

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
             + RE     V    P+ E I ++   + + D L  D  +   +     ++      D 
Sbjct: 390 RNIEREIGKEFVDGTLPTPEEICKKQLFKTMDDILKTDVDEEQIEPYMTDINRQFEYIDK 449

Query: 414 EKIA-----AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK-VGGGSRDNFKGSS 467
           E I      A F R       APE   P S  S                 G R    G  
Sbjct: 450 EDIIKKIVTATFGRFLNYYKNAPEIEKPSSRSSRESSRSGRGEGKSGRSRGQRKAESGYR 509

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         +M  + ++     Q +G I +    +++EV       + R +  
Sbjct: 510 RLFINLGKTDGFYPGEVMQFINKNVH-GHQEVGHIDLLSKQSYIEVPEQDAQKVMRAL-- 566

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
                         D   YK    +  ++++G   R  R + A
Sbjct: 567 --------------DGTTYKGRKVRCNDAEEGGHGRSDRGRAA 595


>gi|226943654|ref|YP_002798727.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718581|gb|ACO77752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Azotobacter
           vinelandii DJ]
          Length = 558

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 157/549 (28%), Positives = 270/549 (49%), Gaps = 27/549 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  A++  GY   + +Q   +   L   D++  AQTG+GKT AF L + S +    
Sbjct: 13  IHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAFALPMLSRIDPAR 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E   ++   V  V + G   +  + + L+ GA
Sbjct: 73  ------REPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLKALRQGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRLCDH+R     +S +K +VLDEADEML LGF +D+E I  + P+ R+ ++F
Sbjct: 127 QILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPESRQTVLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  +A+ +  +   V IA++ +  + ID   ++V    +  A++ +L      
Sbjct: 187 SATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLLEVEEFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+ +       L    ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAA
Sbjct: 247 ALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + ++  +PE+ +HR GRTGRAGR G ++ ++    +R  + + R    
Sbjct: 307 RGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLA--KHDPEKIAAGFL 421
            V     P  + + +   +++     PL  +S +    +++D L A     P  +AA  L
Sbjct: 367 KVAEVHLPGAQQVLDARIRKLTAALQPLLAES-ESSHGELLDRLTAGLGCSPRALAAALL 425

Query: 422 RIHRAGL-----CAPEEITPVSLVSGRDRFRD------DSRAFKVGGGSRDNFKGSSWFS 470
           R    G          E  PV  VS     R+      +    +         +G     
Sbjct: 426 RKATNGQALTLSEVEREQPPVPSVSAPRERRERSDRSMERGVHRERRAPMPLPEGRVRCR 485

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL----LRRTVK 526
            ++G++    A+ L+  +    G+ R +IG I+V+   + +E+  DG++     LR T  
Sbjct: 486 AALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLGKLRDTRV 545

Query: 527 LDKGIQLKY 535
             K ++L+ 
Sbjct: 546 AGKQLKLRR 554


>gi|281355042|ref|ZP_06241536.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317922|gb|EFB01942.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score =  273 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 161/587 (27%), Positives = 266/587 (45%), Gaps = 32/587 (5%)

Query: 1   MKIFENI-----PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAF 54
           M   +N       + + EAL  +G+   + +Q   +   L    D++  AQTG+GKT AF
Sbjct: 1   MSDLDNFRKLGVSEEVLEALRAKGFEAPSPIQALTIPKLLEGAVDLIGQAQTGTGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           G+ +         +      P AL ++PTREL++Q+  EL  L  K  + +A   GG  +
Sbjct: 61  GIPVIELCEGGGKK------PQALILSPTRELSIQIAEELNSLKGKRKLRIAPFYGGQMI 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L++G  +V+GTPGR+ D +    L+ S LK  VLDEADEMLD+GF +DIE IL 
Sbjct: 115 EIQLQRLRDGIDVVIGTPGRIMDLMERGKLDFSELKFAVLDEADEMLDMGFVEDIEKILG 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           ++   +RMLMFSAT+ P I  +A+ + +    V   S        +     V   D+  A
Sbjct: 175 ATNSDKRMLMFSATMPPEILKIAERFMRSYETVRAESAQLNTELTEQIYFEVRREDKFEA 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I+       A+VFC TR  V    + L     +V AL G+++Q +R+  +   +D +
Sbjct: 235 LSRIIDVEQDLYALVFCRTRNDVDELVEKLKLRGHRVEALHGDIAQMQRTRVINQFKDKK 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ IATDVAARGID+ DL  VI+  +    E  +HR GRTGRAG+ G ++  +     R
Sbjct: 295 FKILIATDVAARGIDVNDLTHVINYSMPQGTETYVHRIGRTGRAGKNGTAITFVTPAEYR 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHD 412
           +   + REA+  +  E  P    I E   Q   +            +     D L+ K  
Sbjct: 355 KLTMIQREAHTEIRREELPQGRDIVEMKKQHFSEQLSEAISAGQHQEYLDFADELIEKTG 414

Query: 413 PEKIA-AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
               A A  L++   G   P+    +     R  +            S  +  GS+   +
Sbjct: 415 NASAALAAMLQLRFKGELLPQSYVEIGRKRDRKTWE-----------SSADDHGSTRLFI 463

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            VG      A  ++ ++   + I +  IG I      +FV V+ +  + +    +   G 
Sbjct: 464 GVGKLDGFGAVKMLDLIWEKARIKKYRIGKIDCYDRFSFVNVNFEDAEAIIDAFRRG-GP 522

Query: 532 QLKYLGGEKPDFR--GYKSSGFKS---KNSQDGATKRFKRFKGASKN 573
           +++       D +  G      +S   + S++   +R +R     ++
Sbjct: 523 KVQLAAERPSDEQNAGPAERPNRSVPVRRSREEHAERPERRTYTRRS 569


>gi|323700588|ref|ZP_08112500.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323460520|gb|EGB16385.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 551

 Score =  273 bits (696), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 158/570 (27%), Positives = 260/570 (45%), Gaps = 32/570 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F+ +       +AL+ +G+   T +Q   +   L   +D++  AQTG+GKT AFGL 
Sbjct: 1   MTSFQELGLSGSTLDALTSKGFTAPTPIQALTIPRLLSGTRDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +         R        +L +APTRELA+QV  E++ L     + V    GG ++H +
Sbjct: 61  VIEAAEEGARRV------QSLILAPTRELAIQVAEEIDSLKGGKRIRVLPVYGGQAIHMQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  +VVGTPGR+ DH+    L I  L   +LDEADEM ++GF DD+  IL S+ 
Sbjct: 115 LKALRQGVDVVVGTPGRIMDHLERGSLRIDQLTYFILDEADEMCNMGFVDDVRAILASAN 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             RR LMFSAT+   +  +A+ +  D   V +  E             +A SDR  A+  
Sbjct: 175 ADRRTLMFSATMGGEVMAIAREFMGDFDVVRVKPEVSDAPLTRQVFHEIADSDRFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        +VF  TRA        L +  +    + G+L+Q +R   L   R+ +A +
Sbjct: 235 VIDARPDFYGLVFVRTRADADLVAARLTQRGYPAEPIHGDLNQAQREKILSGFRERKATI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PDL  V++  L  +P+  +HR+GRTGRAG++G+++ +I  N  R+  
Sbjct: 295 LVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKQGVAITLITPNEFRKLM 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + +   + +  EP P +E +     ++++ +   +      G    M   LL     E+
Sbjct: 355 YIAKSTGIDIAKEPLPRIEDVIHSKKRKVVDELNAILEAEGHGAYLAMAGELLHDRPAEE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  LR                   G +      R  +  G +       +    ++G 
Sbjct: 415 VVAALLRSAF----------------GEELVESGYRRIEPVGPAGRGRADMT---CALGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL-- 533
                 +  +  +  ++ + + +I  +RVQ D T   V A   D +   V   +G  L  
Sbjct: 456 AHGMNPKRFVDFIASAANVKQWAIQHVRVQNDRTTFTVPAAEADRVMERVNSREGETLVT 515

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
           +     KP  R +   G+K         +R
Sbjct: 516 RDESRRKPPGRKFPQKGWKPAGKAPRTQRR 545


>gi|160882942|ref|ZP_02063945.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
 gi|156111625|gb|EDO13370.1| hypothetical protein BACOVA_00904 [Bacteroides ovatus ATCC 8483]
          Length = 644

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 172/587 (29%), Positives = 276/587 (47%), Gaps = 32/587 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 RDIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              E +    +               EI   + + G    R D +       SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEVPTDIRGERTGRGDRKEGGFEKRSRQAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNYSFFEVPEKEATNVIKALN 530

Query: 527 LDKGIQLKYLGGEK--PDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             K        G K   +  G      K + +     K  KRF G S
Sbjct: 531 RAK------WNGRKVVVEIAGAGEESGKGRGNGSNERKGNKRFGGKS 571


>gi|153807208|ref|ZP_01959876.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
 gi|149130328|gb|EDM21538.1| hypothetical protein BACCAC_01486 [Bacteroides caccae ATCC 43185]
          Length = 640

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 172/587 (29%), Positives = 271/587 (46%), Gaps = 30/587 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTSNVKHVAYTVHAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+   I ++   +++ D   L+ ++ +E+++ + +      L  
Sbjct: 355 REIERIIGKKFIPGEMPTAAGICQKQLLKVIDD---LEKVKVNEEEISEFMPDIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----SRDNFKGS 466
              E +    +                  V    R     R  +  GG    SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEVPTDSRGERTGRGDRKEGGFEKRSRKAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNFSFFEVPEKEAINVVKALS 530

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             K        G K         G K   +     K  KRF      
Sbjct: 531 RAK------WNGRKVVVEVSSEEGGKGHENGSSERKGGKRFGKGEDR 571


>gi|239617313|ref|YP_002940635.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239506144|gb|ACR79631.1| DEAD/DEAH box helicase domain protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 524

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 148/531 (27%), Positives = 261/531 (49%), Gaps = 31/531 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + +  ++ + G+V  T +Q   +   L  +D++  A TG+GKT AFG+ L 
Sbjct: 3   MNFSEMGLSRKMLNSIEKVGFVEPTPIQSKAIPVILNGRDIIGQAHTGTGKTAAFGIPLL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L   + +        AL + PTRELAVQV RE+  L +    +  +   GG S+ R+ 
Sbjct: 63  EMLDYSSKKV------QALILCPTRELAVQVAREIAALASNRKEIEVLAIYGGQSIERQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +VVGTPGR+ DH+R K L +   K VVLDEADEML++GF +DI +IL    K
Sbjct: 117 NTLKKGIQVVVGTPGRIMDHMRRKTLKLDDTKFVVLDEADEMLNMGFLEDIRYILSHVGK 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R++ MFSAT+  AI  LA+ +QK+   + + +     S ++   + +  S + +A+  +
Sbjct: 177 ERQITMFSATMPKAIIALAQEFQKEPELIKVINRELTVSTVEQYYLEIGESRKFDALSKL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + Y+  + ++VFC+T+  V     +L    + V  L G++SQ  R+  +   R+   +V 
Sbjct: 237 IEYYNPQLSLVFCNTKKKVDELVPMLQAKGYLVDGLHGDMSQSLRNRVMNSFRNKSIKVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+E V + ++  + E  +HR GRTGRAG+ G +          R   
Sbjct: 297 VATDVAARGIDVDDIEAVFNYDIPQDEEYYVHRIGRTGRAGKTGKAFSFAYGRSLHRLRE 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R   + +     PS + +  +  +  L    D L   ++      + +++   +   +
Sbjct: 357 IQRYTKIKIKSLNVPSEKDVNTKRMESFLGEINDILEQGNLSDYVPAVEELIARGYTSME 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           IAA  ++++ +     +                     + G  + +  +      +S GS
Sbjct: 417 IAAALIKMNVSKRAYSQ--------------------NEAGAKNNNRDREMIKLFVSAGS 456

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K     R ++  +   +GI    IG+I +    ++VEV     +L+  ++ 
Sbjct: 457 KHNIRVRDIVGAITGEAGIPGDRIGSIELLSKHSYVEVERRYAELVIDSLN 507


>gi|118602908|ref|YP_904123.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567847|gb|ABL02652.1| ATP-dependent RNA helicase CsdA [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 606

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 142/588 (24%), Positives = 262/588 (44%), Gaps = 29/588 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L   GY   + +QE  +   L  +D++  AQTG+GKT AF L L   +    
Sbjct: 19  LSNTILKVLDAIGYETPSPIQEQCITHLLNGEDIIGQAQTGTGKTAAFSLPLLDKIDL-- 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 + P  L + PTRELA+QV   ++           +   GG S   + R L+ G 
Sbjct: 77  ----GINMPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRPLKRGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H +VGTPGR+ DHI+   L + HLK+ VLDEADEML +GF DDI++I+   P++R++ +F
Sbjct: 133 HAIVGTPGRVMDHIKKGTLKLDHLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQRQIALF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT+   I  +A+ +      V I ++    + I  +  +V   S +  A+  IL     
Sbjct: 193 SATMPSVIKKVAEQFLNQPKIVKIKTKTETATTITQKYCMVGGLSQKLEALTRILEVTTF 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+   +   + L+   F   A++G++ Q +R   +   + G+  + IATDVA
Sbjct: 253 DAMIIFVRTKTLTTELAEKLSARGFSAEAINGDIQQNQRERIITNYKKGKIDILIATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +R    +     
Sbjct: 313 ARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRERRMLNTIEHITR 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-------KIA 417
             +     PS + I  +  +   Q+     +I   +  +   L+++   E       KI+
Sbjct: 373 QKITPIELPSAKIINAKRIETFKQN--IAQTINNQKLDIFKKLVSEFQQENPEIETSKIS 430

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A    I +            +  + +   ++     K              + + VG+  
Sbjct: 431 AALAFIAQGNEPLLLSEKEPNFNNNQIPKKEKIIPIKADPLKDFPKIQMCRYKIEVGNNN 490

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQL 533
             +   ++  +   + I+ + IG+I++    + +++  +      ++L+ +V   K + +
Sbjct: 491 NIKPGNILGAIANEADIDSEYIGSIQIFDHCSTIDLPDEMPNEIFEVLKNSVVCGKHLNI 550

Query: 534 --------KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                   K   G +   R +    F    + +  + +    K    N
Sbjct: 551 VELTEKNNKTTIGGRSKKRNFSRVKFSKSKNNNRCSNKDYYGKNKKNN 598


>gi|330448082|ref|ZP_08311730.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492273|dbj|GAA06227.1| csdA, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 627

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 159/597 (26%), Positives = 281/597 (47%), Gaps = 39/597 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL   G+V  T +Q A +   L   D L  AQTG+GKT AF L + + +   
Sbjct: 12  DLADTLLSALDNMGFVAPTPIQAASIPLLLTGVDALGKAQTGTGKTAAFSLPVLNKVNLS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L+NG
Sbjct: 72  QHK------PQAIVMAPTRELAIQVAAEMKTLGQNIKGLKVLEIYGGASIVDQMRALKNG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I  K L++  +   VLDEADEML +GF DD+ +I++ +P+  + ++
Sbjct: 126 AHIVVGTPGRVKDLISRKQLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +   + ++  R+++A ENR  S ++ +  +V   ++D A+  +L     
Sbjct: 186 FSATMPPIVKEIVDRFLRNPERIDVAGENRTVSKVEQQFWVVKGVEKDEAMSRLLETEDT 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L    F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 246 DASIVFVRTRQDTERLADWLCSRGFKAAALHGDIPQSLRERTVDHIKRGVIDILVATDVV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R   
Sbjct: 306 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRTGKAILLVRTNQIRMLRTIERVTK 365

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGF 420
             +     P  + +      R+   LQ      ++    + +  +  + + D   +AA  
Sbjct: 366 SRMEEIQLPLRDLVAAARLSRLGEELQAQKEQTNVDAFVELVEKLQESIEVDAATLAAML 425

Query: 421 LRIHRAGLCAPEEITPVSLVS----------GRDRFRDDSRAFKVGGGSRDNFKGSSW-- 468
           L+  +       +     + +            +      R  +   G R +F  + W  
Sbjct: 426 LQRQQGNRPLFYKGPDPMIAAIEREAQRRERRGNDRDRGERGDRRDRGERRSFNSADWDT 485

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
           + L VG +Q  + + ++  +    G++++ IGAI++ P  TFV++       +   +K  
Sbjct: 486 YQLQVGREQGVQVKDIVGAIANELGLSKEFIGAIKLAPTHTFVQLPKKMTAEVAAQLKKL 545

Query: 529 KGIQ---------LKYLGGEKPDFRGYKSSGFKSKNSQD-------GATKRFKRFKG 569
           +  Q          + L   +P       +    + ++D       G  +RF R +G
Sbjct: 546 RIRQNEVKAVVVEGEVLREHRPRGGNRDGNRGGYRGNRDGNRDGNRGGERRFDRNRG 602


>gi|327399574|ref|YP_004340443.1| DEAD/DEAH box helicase domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327182203|gb|AEA34384.1| DEAD/DEAH box helicase domain protein [Hippea maritima DSM 10411]
          Length = 526

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 152/551 (27%), Positives = 254/551 (46%), Gaps = 38/551 (6%)

Query: 1   MKIFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAF 54
           M   EN     + + I + L ++G+   T +QE ++   L+  KD++  A TG+GKT+AF
Sbjct: 1   MSSEENFKGLGLSEGILKTLQKQGFEKPTPIQEKVIPLILQSSKDLVAEAPTGTGKTLAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           GL L   L  +           A+ +APTRELA+QV  E+     K  +      GG S+
Sbjct: 61  GLPLIDLLKEKTGYV------QAVILAPTRELAIQVCDEINAFKGKKRLKAFPIYGGQSI 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             ++R L+ G  IVVGT GR+ DHI  K LN+S +   +LDEADEML++GF DDI+ IL 
Sbjct: 115 ELQKRRLKEGVDIVVGTAGRIIDHINRKTLNLSKIDYFILDEADEMLNMGFIDDIKEILT 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +   + M MFSAT+      + +  ++   +       +           V   D+  A
Sbjct: 175 HTNPTKNMFMFSATM---PEEIKRLAKQYMKKPEFVRIEKSKMLTSQIYFEVKEQDKFEA 231

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I         ++FC T+         L +  +   A+ G+LSQ +R   L+  RD +
Sbjct: 232 LCRIRDAVEDFYGLIFCKTKVDAQNVANKLIDRGYYADAIHGDLSQDKRERILKRFRDKK 291

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+  L  VI+  +  + E+ +HR GRTGRA +KG+++  +  +  R
Sbjct: 292 INMLVATDVAARGIDIDGLTHVINYSMPQDAESYIHRIGRTGRAQKKGIAITFVSPSEYR 351

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           +   + + A   +  E  PS++   E      ++ ++D + L+   GD   M + LL ++
Sbjct: 352 KLRLIQKLAKAEIKKEKLPSIQQAIEYKKLSVKKAIED-VELNKNDGDYLTMAEELLGQN 410

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E I A  L++  +   +      +                      + N        +
Sbjct: 411 DAELIIAKLLKLKFSSQLSKNNYKEIEE-------------------PKLNRNSMVKLFV 451

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
           ++GS+    A+ L   + +   I   +I  IR+    +F+ V A+  + +    K  K  
Sbjct: 452 ALGSQNGYTAKKLADFISKKVEIESNTIRDIRIFDRFSFLSVPAEEAEEILYAFKSQKRG 511

Query: 532 QLKYLGGEKPD 542
               +   KP 
Sbjct: 512 FRPIVSKAKPR 522


>gi|227485114|ref|ZP_03915430.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236947|gb|EEI86962.1| possible ATP-dependent RNA helicase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 550

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 282/542 (52%), Gaps = 23/542 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +    A+++ G+ + + +QE  + P L  KDV+  AQTG+GKT AF + +   + A  
Sbjct: 22  ISEETLRAIADMGFKSPSPIQEETIPPLLDGKDVIGQAQTGTGKTAAFAIPIIEKIEANG 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTREL +QV +E+       TG+ +    GG  + ++ + L+ G 
Sbjct: 82  L-------TQALVLCPTRELCIQVAKEIGNLAKYHTGIKILSVYGGTQIVKQIKALKKGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D +R + L + +LK VVLDEADEM D+GFRDD++FILD++   R+   F
Sbjct: 135 EIVVGTPGRLMDLMRRRVLKLDNLKIVVLDEADEMFDMGFRDDMKFILDATNDDRQTCFF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+  +K YQK+ V + I ++    + ID   + +  +D++  +  +L  +  +
Sbjct: 195 SATMGKEISEFSKIYQKNPVTIKIKAKELTVNKIDQHFIKLKEADKEETLTRLLEINKPR 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC+T+  V +  + L++  + V  L G+L Q +R   ++  R+    + +ATDVAA
Sbjct: 255 LAIIFCNTKRKVDKLVESLSKKSYLVDGLHGDLKQTQRDIVMKKFRNNTIDILVATDVAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+ +L    E  +HR GRT RAGR G+S  +I      R + + +    
Sbjct: 315 RGLDVDDVDMVINYDLPQLDEYYVHRIGRTARAGRSGLSYSLISGRDNERLKAIEKYTKA 374

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKM---VDVLLAKHDPEKIAAGFL 421
           ++     PS+  +       ++ D +  L++  G E++    + ++   +DP  I+   L
Sbjct: 375 TIKQAQIPSLVQMDRNLETGVIDDIIEKLENYTGVEREKSILIRLMEKGYDPFVISQVLL 434

Query: 422 --RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
             ++++  L   E+I      +G D  ++ S A K       + +  +   L+ G     
Sbjct: 435 SDKLNKDNLDHHEKI------AGVDTPKEKSTANKKKSNKYKD-ENMTTLFLNRGKMDNF 487

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK--GIQLKYLG 537
               ++  L R + +  + IG IR+Q   +FV+V    V    RT+   K  G +LK   
Sbjct: 488 TKDKIIKALNRLAHVPNKKIGQIRIQKSYSFVDVEKSVVYECIRTMNNKKIAGKKLKIEE 547

Query: 538 GE 539
            +
Sbjct: 548 SQ 549


>gi|299146922|ref|ZP_07039989.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|298514807|gb|EFI38689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
          Length = 644

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 280/597 (46%), Gaps = 34/597 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQVDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              E +    +               EI   + + G    R D +       SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEVPTDIRGERTGRGDRKEGGFEKRSRQAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNYSFFEVPEKEATNVIKALN 530

Query: 527 L----DKGIQLKYLGGEKPDFRGY------KSSGFKSKNSQDGATKRFKRFKGASKN 573
                 + + ++  G  + + +G       +  G +     D    R++      K+
Sbjct: 531 RAKWNGRKVVVEIAGAGEENGKGRENGSNERKGGKRFGGKSDERAPRYENKDRKPKD 587


>gi|225016981|ref|ZP_03706173.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
 gi|224950247|gb|EEG31456.1| hypothetical protein CLOSTMETH_00902 [Clostridium methylpentosum
           DSM 5476]
          Length = 563

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 170/575 (29%), Positives = 289/575 (50%), Gaps = 36/575 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+    G+A+   G+ N T +Q   +       DV+  +QTG+GKTVAFG+     +  E
Sbjct: 10  NLSDETGQAIEAMGFDNATDIQAQSIPLIRAGYDVIGRSQTGTGKTVAFGVPAVELIDTE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
             R    +    L + PTRELAVQ   E+E +      V AV   GG  + R+   L+ G
Sbjct: 70  ELR----NKTQVLILCPTRELAVQACSEIEKIAKYKRGVRAVDIYGGAPMDRQIMRLKRG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DH+R + L + HLK ++LDEADEML++GFR+D+E IL  +P +R+ ++
Sbjct: 126 ANIVVGTPGRVMDHLRRRTLKLDHLKMIILDEADEMLNMGFREDVETILKQTPDERQTIL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PAI  L K YQKD   + I  +     +I+ +   V +  + +A+  IL+YH  
Sbjct: 186 FSATMPPAILALTKQYQKDPQLIEINRKQVTLDNIEQQFYEVPMGRKMDALGIILQYHDP 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +I+FC+T+  V   T  L    +    L G++ Q +R+  +   + GR ++ +ATDVA
Sbjct: 246 ALSIIFCNTKRMVDEVTAFLDRSGYSAEGLHGDMKQSQRTKVMDSFKRGRTKILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERLFREA 363
           ARGID+ +++ VI+ ++  N E  +HR GRTGRAG++G +V +   +        + R  
Sbjct: 306 ARGIDVNNVDYVINYDVPQNQEYYVHRIGRTGRAGKEGKAVTICSGRRQVDELYHIVRMT 365

Query: 364 NVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLAK-HDPEKIAA 418
             ++  E  PS + I  R  +    R+ Q     + +    K++ + L+ K ++P  IAA
Sbjct: 366 KSTIKRESLPSGQDIERRSNEGVVARMEQKLAAAEEL--YYKEVAEELVQKGYNPTTIAA 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             L +       P+   P            + + F+   G +          +++G +  
Sbjct: 424 VALEMAFGR---PKTDFP------------EIKQFRPKAGLQGPRGSFRKIEINIGRENH 468

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKG-IQL 533
                ++  +   S ++ + IG I +  D T V +    ++   + +       K  + +
Sbjct: 469 IAPNHIVGAITERSDLSGRDIGKIEIYDDKTIVAIPDSQIESTVKAMDGCKICGKPTVTV 528

Query: 534 KYLGG---EKPDFRGYKSSGFKSKNSQDGATKRFK 565
              GG   ++PD+R   + G++ +N++   T R  
Sbjct: 529 ALKGGDTAKRPDYRPGGNRGYRPRNNRKPRTSRRG 563


>gi|123966425|ref|YP_001011506.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200791|gb|ABM72399.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 595

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 145/544 (26%), Positives = 254/544 (46%), Gaps = 24/544 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             ++I  +L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L +   L    
Sbjct: 58  FNKLILNSLENKGYKIPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPIIEKLENNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV    +      T +      GG     +   L+   
Sbjct: 118 ESNAK-----VLVMTPTRELATQVADSFKSYSVESTNLRTLAIYGGTDFRNQISSLKRKT 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     I+++  +VLDEADEML +GF +DIE+I+D  P+ ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKINNINCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  R + V    +  A +  +     +
Sbjct: 233 SATMPNEIRNIAKKYLNDPAEILIKSVKKETQLITQRYINVQRHHKLEA-LKRILEITNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LVI+ +   + E   HR GRTGRAGR G ++  + Q  +     L      
Sbjct: 352 RGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRN 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK--- 415
            +     P+ + I E+   +++   + + L     +EKK     ++D+L  K+   +   
Sbjct: 412 KIEEIEIPNNKLINEKRMGKLISNLNEISLAQENNEEKKALMIDILDILREKYSMNESNI 471

Query: 416 -IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA------FKVGGGSRDNFKGSSW 468
            +AA  L I        E+ + +   +  DR R +           +   +         
Sbjct: 472 AMAAINLAIGNKSFFLNEDESWIYKQNNSDRNRSNRNGSGNNRMRNINRRNNYQNDSFET 531

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
           +  + G   +     ++  +C S+ IN +SIG I++  + + V++  D    +R  ++  
Sbjct: 532 YKFNFGKMDRVRVSNIISSICNSTNINGRSIGKIQIFNEYSLVDLPKDLHGEVRNKLRKL 591

Query: 529 KGIQ 532
           +   
Sbjct: 592 RIRN 595


>gi|260172628|ref|ZP_05759040.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315920918|ref|ZP_07917158.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694793|gb|EFS31628.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 644

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 279/597 (46%), Gaps = 34/597 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQVDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIISKKFIVGEMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              E +    +               EI   + + G    R D +       SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEVPTDIRGERTGRGDRKEGGFEKRSRQAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNYSFFEVPEKEATNVIKALN 530

Query: 527 L----DKGIQLKYLGGEKPDFRGY------KSSGFKSKNSQDGATKRFKRFKGASKN 573
                 + + ++  G  +   +G       +  G +     D    R++      K+
Sbjct: 531 RAKWNGRKVVVEIAGAGEESGKGRENGSNERKGGKRFGGKSDERAPRYENKDRKPKD 587


>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
 gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
           12042]
          Length = 556

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 154/564 (27%), Positives = 271/564 (48%), Gaps = 25/564 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +  A+++ GY   T +Q A +   +   DV+  +QTG+GKT AF + + 
Sbjct: 1   MKFNELNLSPEMSRAIADCGYTEATYIQSACIPVVMNGGDVIGQSQTGTGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
             L       +    P AL ++PTRELA+QV  E+        G+      GG  + ++ 
Sbjct: 61  EML-----EVTDRKRPQALILSPTRELAMQVCDEIRKFTKYKEGIRTVAVYGGQQISKQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ GA IVVGTPGR+ DHIR + L     + +VLDEADEML++GFR+DIE ++++ P+
Sbjct: 116 LELKKGADIVVGTPGRVLDHIRRRTLRFDQCRVLVLDEADEMLNMGFREDIETVIEALPQ 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I  +   YQ + V +           I+    +     +   ++ +
Sbjct: 176 QRQTVLFSATMPKPILEITSQYQTNPVHIKTPQTQINTPKIEQVYYVCPKEAKKEILMQL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A++FC+T+  V   T  L    +   AL G++ Q+ R+  +   + G+  + 
Sbjct: 236 ISMQNPHLAMIFCNTKKMVDELTSDLVSKGYPAAALHGDMKQEMRTGVMDNFKKGKINIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +++V + +L    E  +HR GRTGRAG++G++V +I    +     
Sbjct: 296 VATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRTGRAGKEGLAVTLITARQKYALRD 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L R     +  +P PS+E +R+     + +D              ++  + +  PE +AA
Sbjct: 356 LERTTRSKLTQKPLPSLEEVRKIRLDFLRED--------------LEHRMTRDVPEPLAA 401

Query: 419 GFLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
               +   G    E    ++  ++G + F + +             KG S   L +GS Q
Sbjct: 402 IIDTMKDDGYSYREMALALAYQIAGHEMFDESAWNASARPALTVTEKGMSELILDIGSDQ 461

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              A  ++  +  ++G+  + IG IR+    T V++       +   +K    KG  +  
Sbjct: 462 DVSAAIIVSAIATATGLPGKDIGKIRISAQETTVQIPRQFDREIADAMKNTPIKGQTVHP 521

Query: 536 LGGEKPDFRGYKSSGFKSKNSQDG 559
           L   +   + Y +   K + +  G
Sbjct: 522 LLMVRKG-KDYSNLPPKRRAASKG 544


>gi|258648289|ref|ZP_05735758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260852209|gb|EEX72078.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 607

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 166/593 (27%), Positives = 281/593 (47%), Gaps = 30/593 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A++E GY N   VQE ++   L    DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVNEEIRRAIAELGYENPMPVQEEVIPYLLGVGNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           +   +              A+ ++PTREL +Q+  +L+       G+ V    GG S+  
Sbjct: 61  VLQKVDPTQ------RTTQAVILSPTRELCLQIADDLKDYSRYIDGLHVQAVYGGTSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA ++V TPGRL D +      + +++ VVLDEADEML++GF + I+ IL   
Sbjct: 115 QIRSLKRGAQVIVATPGRLIDLMERGVAKLENVENVVLDEADEMLNMGFTESIDAILAGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L FSAT+S  I  +A+NY  D   + + S N    ++++   LV   D+ +A+ 
Sbjct: 175 PENRNTLFFSATMSREIERIARNYLHDHKEIVVGSRNEGAENVNHTYYLVQARDKYHALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   AL G+LSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPKIYGIIFCRTRLETQEVADALIKDGYNAEALHGDLSQAQRDLTMQKFRQHNTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+ DL  VI+  +  + EN +HRSGRTGR G++G S+ +I    + + 
Sbjct: 295 LLIATDVAARGLDVDDLTHVINYGMPDDIENYIHRSGRTGRIGKRGASIAIIHLREKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD------VLLAK 410
             + R           P  + I  +    ++     L+ ++ DE ++          L  
Sbjct: 355 RNIERTIGKQFEVGVLPEPKEICTKQLYHVMDH---LEHVEVDETQIAPFLPEVFRKLDW 411

Query: 411 HDPEKIAA-----GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              E +        F R  +    APE I P       +  R+ +R+ +   G      G
Sbjct: 412 LSKEDLIRRLVSDAFGRFLKYYANAPEIIQPGGKGDTPEARRERNRSERRERGPHKADPG 471

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G +    AR ++ ++ R     +  IG I +  + +F EV  +   ++ + +
Sbjct: 472 YARLFINLGKRDNFYAREIINLINRYVK-GKIQIGRIDLTNNCSFFEVPEEDAPIVLKKM 530

Query: 526 ----KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDG-ATKRFKRFKGASKN 573
                 ++ + +       P+    K+ G K K +++  A +R +R     + 
Sbjct: 531 ARVKVGNRPVVVDAADRVNPEGGEEKARGRKRKPAREEYAGRRSERKAPRGER 583


>gi|224536831|ref|ZP_03677370.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521553|gb|EEF90658.1| hypothetical protein BACCELL_01707 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 657

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 170/590 (28%), Positives = 278/590 (47%), Gaps = 34/590 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKNFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L       TG+ V    GG S+  
Sbjct: 61  LIQKINVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+ + I E+   +++ D   L+ ++ +E+ M D +      L  
Sbjct: 355 REIERIISKKFIVGEMPTGKQICEKQLLKVIDD---LEKVKVNEEDMADFMPEIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---GSS 467
              E +    +                  +    R   +SR      G R++ K   G +
Sbjct: 412 LSKEDLIKRMVSHEFNRFSEYYRNREEIEMPTDSRGERNSRGGSERTGDRNSRKADPGFT 471

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
              +++G         L+ +L  ++   R  +G I +  + +F EV       + + +  
Sbjct: 472 RLFINLGKMDNFFPNELIGLLNGNTR-GRVELGRIDLMKNFSFFEVDEKEAGNVVKALNR 530

Query: 528 ----DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                + + ++  G E            K +   +G     K F+G  ++
Sbjct: 531 ANWNGRKVSVEIAGEE-------GKEAPKGRRKSEGNNYGKKEFEGKKRS 573


>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
           [Legionella longbeachae NSW150]
 gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
 gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
           protein A) [Legionella longbeachae NSW150]
          Length = 569

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 142/571 (24%), Positives = 253/571 (44%), Gaps = 37/571 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   N    +  AL +  +   + +Q   +   L  +D +  AQTG+GKT AF L +
Sbjct: 5   ITSFAAFNFSDALNRALEDMKFTTPSPIQAQTIPLLLEGRDAIALAQTGTGKTAAFALPI 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRE 117
              L       S      AL +APTRELA+QV  + E     +  + VAV  GG    R+
Sbjct: 65  LQNLS------SSVHGTQALILAPTRELAIQVAEQFELLSANQRSITVAVLCGGQEYGRQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA IVVGTPGR+ DH+    L + +L+  +LDEADEML +GF +DIE I+   P
Sbjct: 119 LKQLRAGAQIVVGTPGRILDHLDKGTLLLDNLRTFILDEADEMLRMGFIEDIETIMSKLP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K+++ +FSAT+   I  +A  Y  +   + I +E      I+ R +  +   + +A++ 
Sbjct: 179 EKKQIGLFSATMPHRIRQIANTYLHNPAAIEIRAETATVKSIEQRFLFASGHQKYDALLR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     +  IVF  T++S     ++L +   + +A+ G+++Q  R   +   R G   +
Sbjct: 239 VLAVEDYQGVIVFVRTKSSTEEVAEILQQQGLRAMAIHGDITQALRERIIAQFRQGAIDI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +L  + E  +HR GRTGRAGR G+++  +     R   
Sbjct: 299 LVATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAILFVTPKEGRLIT 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEK 415
            + R     +     P+   I     QR + +       +     K++++  + ++D   
Sbjct: 359 SIERHTRQRITKVAVPTDHMIHVTRQQRFMANITARLEHEHIISYKRIIEEYIKENDASA 418

Query: 416 IAAGFLRIHRAGLCAP---EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK-------- 464
           +              P   E+  P    S ++   + +  F+      D  K        
Sbjct: 419 VDVAAALALLLHKDMPWQKEQALPKESRSIKENRPERNGKFERSFSRFDERKSFNSDKKS 478

Query: 465 -----------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                          F L VG     +   ++  +   +G+  + I  +++  D + V +
Sbjct: 479 PKDNRKKFGDVEQDLFRLDVGKVHGVKPGNIVGAIANEAGLQSKHITGLKILDDHSIVRL 538

Query: 514 ----SADGVDLLRRTVKLDKGIQLKYLGGEK 540
                 + +  L +     + ++L  +    
Sbjct: 539 PKGMPKEIMSGLTKAWVCGRQLKLTLISSNA 569


>gi|288925364|ref|ZP_06419298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315606787|ref|ZP_07881796.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|288337835|gb|EFC76187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella buccae
           D17]
 gi|315251452|gb|EFU31432.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 613

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 154/553 (27%), Positives = 261/553 (47%), Gaps = 26/553 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ N   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSEDIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           +     A +          A+ ++PTREL +Q+  +L        G+ VA   GG  +  
Sbjct: 61  VVQKTDATD------KTTQAVILSPTRELCLQIADDLNAFSKYIDGLHVAAVYGGADIGP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++GA I+V TPGRL D I      +  +  +VLDEADEML++GF + I  I ++ 
Sbjct: 115 QIRTLKHGAQIIVATPGRLIDLINRGVAKLDQVNNIVLDEADEMLNMGFSESINAIFETL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P     L+FSAT+S  +  +AKNY  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PDDHNTLLFSATMSREVERIAKNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RVVDFYPHIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRRHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTREKFKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
            ++ ++     V    PS E I ++   +++ D +  D  +   ++ +  ++ +    D 
Sbjct: 355 RQIEKQIGKEFVDGTLPSPEEICKKQLYKVMNDIMKTDVDEEQIEQYMPEIIRQFEYIDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD----------SRAFKVGGGSRDNF 463
           E I    + I         +  P        + + +                  G R   
Sbjct: 415 EDIIKKMVTITFGRFLNYYKNAPEIEKPSSSKGKKERGEMRGGGARGGRGDRQRGPRKAE 474

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G +   +++G         +M  L ++    RQ +G I +    +++EV  +    + +
Sbjct: 475 DGFTRLFINLGKADGFYPGEVMQFLNKNVR-GRQEVGHIDLMSKFSYIEVPEEDAGRVMK 533

Query: 524 TVKLD--KGIQLK 534
            +     KG +++
Sbjct: 534 AINGSQYKGREVR 546


>gi|255690282|ref|ZP_05413957.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260624185|gb|EEX47056.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 621

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 273/587 (46%), Gaps = 24/587 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQIDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R  L+FSAT+SP I  ++KNY ++A  + I  +N   S++ + A  V   D+  A+ 
Sbjct: 175 PKERNTLLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+   I ++   +++ +   L+ ++ +E+++ + +      L  
Sbjct: 355 REIERIIGKKFIPGEMPTAAGICQKQLLKVIDE---LEKVKVNEEEIAEFMPDIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG----SRDNFKGS 466
              E +    +                  +    R     R  +  GG    SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEIPTNSRGERAGRGDRKEGGFEKRSRKAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNFSFFEVPEKETINVVKALS 530

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             K    K +     +  G + +  +    +       K  K   K 
Sbjct: 531 RSKWNGRKVVVEVSNEEGGKERAPRRENKDRKSKEVSVKGSKAGKKE 577


>gi|237720587|ref|ZP_04551068.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|293373374|ref|ZP_06619730.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
 gi|229450338|gb|EEO56129.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|292631660|gb|EFF50282.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CMC
           3f]
          Length = 644

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 167/597 (27%), Positives = 280/597 (46%), Gaps = 34/597 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY N   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LLQQVDVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S +  VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMERKTVSLSTIHNVVMDEADEMLNMGFTESINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++KNY ++A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKNYLRNAKEITIGRKNESTNNVKHVVYTVQAKDKYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  +   +    P+   I ++   +++ D   L+ ++ +E+++ D +      L  
Sbjct: 355 REIERIISKKFIVGKMPTAAGICQKQLIKVIDD---LEKVKVNEEEIADFMPEIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              E +    +               EI   + + G    R D +       SR    G 
Sbjct: 412 LSKEDLIKRMVSHEFNRFAEYYRNRAEIEVPTDIRGERTGRGDRKEGGFEKRSRQAAPGF 471

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +   +++G         L+ +L  ++   R  +G I +  + +F EV       + + + 
Sbjct: 472 NRLFINLGKTDSFFPSDLIGLLNSNTR-GRIELGRIDLMQNYSFFEVPEKEATNVIKALN 530

Query: 527 L----DKGIQLKYLGGEKPDFRGY------KSSGFKSKNSQDGATKRFKRFKGASKN 573
                 + + ++  G  + + +G       +  G +     D    R++      K+
Sbjct: 531 RAKWNGRKVVVEIAGAGEENGKGRENGSNERKGGKRFGGKSDERAPRYENKDRKPKD 587


>gi|254428150|ref|ZP_05041857.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196194319|gb|EDX89278.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 551

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 141/521 (27%), Positives = 244/521 (46%), Gaps = 17/521 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+V+  A++ +G+   + +Q   +   L   D+L  AQTG+GKT AF L L + L    
Sbjct: 13  LPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAFALPLLARLDPA- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L +APTRELA+QV    E        +  +   GG     + + L+ GA
Sbjct: 72  -----LREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLKGLRGGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+    + +++LKA+VLDEADEML +GF DD++++L+ +P   ++ +F
Sbjct: 127 QVIVGTPGRVMDHMERGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDDCQLALF 186

Query: 186 SATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+ P I  +A  + K               + I  R   VA  ++ +A+  IL     
Sbjct: 187 SATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRILEAEEH 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+ +     + L     +  AL+G++ QQ+R   +Q ++D R  + IATDV 
Sbjct: 247 DAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLLIATDVV 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ ++  +PE  +HR GRTGRAGR+G ++  + +  Q    ++ R   
Sbjct: 307 ARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQIERITR 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLA---KHDPEKIAAGF 420
            S+     PSV+ +  +   R  +    F      DE + +   L          +AA  
Sbjct: 367 QSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVDEARALVNQLRDAMDISDNDMAAAL 426

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             +         +   +     R        R + R  +       + K    + + VG 
Sbjct: 427 ATMMFKREPLILKEPKMVKEPRRRESAHVGGRREERNPRNRNDKGRSDKTMRRYRIKVGH 486

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
               +   ++  +   + +  + IG I++  D + VE+  D
Sbjct: 487 DHGVKPGNIVGAIANEAKLPSRLIGPIKIHQDHSTVELPED 527


>gi|291514657|emb|CBK63867.1| Superfamily II DNA and RNA helicases [Alistipes shahii WAL 8301]
          Length = 690

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 153/571 (26%), Positives = 259/571 (45%), Gaps = 29/571 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + +  A+  +G+   TS+Q   +   L    D++  +QTG+GKT AFGL +   +   
Sbjct: 32  LSEEMLAAVQAKGFETPTSIQRLTIPRLLSGENDIIAQSQTGTGKTAAFGLPILQQIEPS 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         ++ + PTRELAVQ   EL     +  + +    GG ++  + R L  G 
Sbjct: 92  KE------GVQSIILVPTRELAVQAAEELLSYNRERRLSITAIYGGAAMSEQLRRLSRGV 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHIR   L +  ++ +VLDEADEML++GF +D+E I+  + + RR+L+F
Sbjct: 146 DIVVGTPGRVLDHIRRGTLKLDKVRFLVLDEADEMLNMGFVEDVEEIMGHTGEDRRVLLF 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L++ Y ++   + + S++      +     V  +D+ +A+  I+      
Sbjct: 206 SATMPERIIRLSEAYMRNTEVLRVESQHLTADLTNQIYFEVREADKFDAMTRIIDIEPDF 265

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFC T+  V      L    +    L G++SQ +R   L+  RD    + +ATDVAA
Sbjct: 266 YGIVFCRTKIGVDEVATRLVAQGYSAEGLHGDVSQAQREKILRKFRDKAVNILVATDVAA 325

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+  L  + E+ +HR GRTGRAG +G ++  I     RR   + R+   
Sbjct: 326 RGIDVSNLSHVINYSLPQDSESYVHRIGRTGRAGNQGTAITFISGAELRRFNWMMRDIKA 385

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  E  PS + I      +I  D   +  +   GD   +   LL  + P+      LR+
Sbjct: 386 DIKRETLPSPQDIVAMKRAKIKDDLQEIVANESYGDYADIAAELLESYAPDVALGALLRL 445

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                        +   S                    + KG +   L++G +    AR 
Sbjct: 446 AFRSELDQSNYPEIRSFS-------------------VDRKGKARLFLALGGRDGYTARR 486

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG-IQLKYLGGEKPD 542
           ++ ML R  G+  ++I  +RV  + + V V     + +   +    G  ++  + G   +
Sbjct: 487 IVEMLKRKCGLRDKNIDDVRVFENYSLVSVPFSDAEAVVGQLNASGGRRRIAKIDGSDAE 546

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             G K     ++    G         G  ++
Sbjct: 547 NGGGKRRRPATEGRNGGEGASGSESAGEPRS 577


>gi|224370609|ref|YP_002604773.1| DeaD [Desulfobacterium autotrophicum HRM2]
 gi|223693326|gb|ACN16609.1| DeaD [Desulfobacterium autotrophicum HRM2]
          Length = 616

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 150/592 (25%), Positives = 265/592 (44%), Gaps = 72/592 (12%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL + GY   T++Q   +   L  +D+L  AQTG+GKT AF L L S +  +  +
Sbjct: 28  KPVLKALDDLGYETPTTIQAETIPYILAGRDLLGQAQTGTGKTAAFALPLLSRIDIKLKK 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                 P  L +APTRELA+QV    + +     G  V    GG +   +   L+ G H+
Sbjct: 88  ------PQVLVLAPTRELAIQVAESFKGYAARIKGFNVLPVYGGQAYAGQLNQLKRGVHV 141

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGRL D ++   L+++ +  +V+DEADEML +GF DD+E+IL+ +P  R++ +FSA
Sbjct: 142 IVGTPGRLMDLMKRGVLDLTQIMTLVIDEADEMLRMGFIDDVEWILEQTPPGRQVALFSA 201

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   I  +A  Y  D   V I         I  R  +V  + + +A+  IL        
Sbjct: 202 TMPAPIKKIAIKYLTDPKDVFIRLRTATADTIRQRFWMVKGTHKLDALTRILEAETFDAI 261

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+ +     + L    +  VAL+G+++Q+ R   +   + G+  + +ATDVAARG
Sbjct: 262 IVFVRTKTATVELAEKLEARGYAAVALNGDIAQKARERTIDRFKKGKIDILVATDVAARG 321

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  VI+ ++ +  E+ +HR GRTGRAGR G ++  +    +   + + +     +
Sbjct: 322 LDVERVSHVINYDIPNGAESYVHRIGRTGRAGRAGDAILFVSPRERWMLKVIEKTTRQQI 381

Query: 368 VWEPAPSVEAIRER---DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD------------ 412
                PS EAI ++   D  + + D L    +     ++++    +HD            
Sbjct: 382 EMMKLPSTEAINDKRIADFNQSITDTLASKELDL-YLELMEQYRQEHDVPALDIAAALAL 440

Query: 413 ------------PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
                       P+K++    +  R      ++       S    FR D +         
Sbjct: 441 MLQGEKPLLLSSPKKVSVVSEKPSRTEDKFKDKPLRKDEKSRDKAFRKDEKPKDKPFRKD 500

Query: 461 DNF---------------------------------KGSSWFSLSVGSKQKAEARWLMPM 487
           D                                   KG   F + VG    A+ + ++  
Sbjct: 501 DEKSRDKPSPKAAKLADKPAGKKKASPKKAAALPPGKGMERFRIEVGDVHGAKPKDIVGA 560

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKY 535
           +   + ++ + IGAI ++ D +FV++     A   +LL++     + +++  
Sbjct: 561 IANEAELDGKFIGAITIEHDHSFVDLPIGMPATIFELLKKVRVAGQQLKISR 612


>gi|237739222|ref|ZP_04569703.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
 gi|229422830|gb|EEO37877.1| ATP-dependent RNA helicase [Fusobacterium sp. 2_1_31]
          Length = 529

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 155/554 (27%), Positives = 257/554 (46%), Gaps = 37/554 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q+  +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLGEKVLKVLSKKGYESPTPIQKLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +       +          A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIENFETSDHHI------QAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  + 
Sbjct: 121 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTN 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +RML FSAT+ P I  +AK + K+   + + S        +     V   D+  A+  
Sbjct: 181 DDKRMLFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 241 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 301 LVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   + E 
Sbjct: 361 QIQKAVKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAEN 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 421 IVASLLKLTYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 461

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + + +  I    V    +FV V     +++            + 
Sbjct: 462 KDGMTPKKLVDFIVKKAKVKQAYIKNAEVYDAFSFVSVPFKEAEIIVEAFA-------EI 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 RKGKKPLIEKAKSK 528


>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
          Length = 554

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 148/558 (26%), Positives = 269/558 (48%), Gaps = 30/558 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M +F   N+   I +A+ E G+   T +Q+  +   L + +D++  AQTG+GKT AF L 
Sbjct: 1   MNLFSESNLSPEILKAVGEMGFETPTEIQKQSIPFILSDVRDLIALAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +   + +         L + PTREL +Q+ ++++        + +V   GG S+  
Sbjct: 61  ILDMIDDTSRKI------QLLVLCPTRELCLQIAKDIKNYSKYQPNIKSVAVYGGSSITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++   I+VGTPGR+ D I  K L+ S +  +VLDEADEML +GF+DD+E IL  +
Sbjct: 115 QIRSLRDKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETILSET 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ ++ L+FSAT++  +  ++K+Y  +  R+++ S N    +I +   +V    +  A+ 
Sbjct: 175 PETKQTLLFSATMNKEVERISKSYLTNPHRISVGSINAVKKNISHEYYVVNYRQKKEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  + +I+FC TR         L ++ +   AL G+LSQ +R   +   R     
Sbjct: 235 RLIDANPNQYSIIFCRTRMEAKEVADYLMQNGYAADALHGDLSQAQRDTVMLKFRLKNID 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+ 
Sbjct: 295 ILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEETRKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +  +  + +  +P P  E I +     + +          D    +   L++   E++
Sbjct: 355 KHIKVQTQIELKEKPIPKGEDIIKAQVAGVFEHLFTEHETYFDFDDSLIPDLSQFSKEEL 414

Query: 417 AAGFLRI----------HRAGLCAPEEITPVSLVSGRDRFRDD---SRAFKVGGGSRDNF 463
               L+           +R  L   +      +   R   R D       + G   + + 
Sbjct: 415 VHQLLQFQLRDLALYYKNRNDLSDQKLKKEGDIKESRREGRRDKGERSRDRGGRKGKKSN 474

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ--SIGAIRVQPDLTFVEVSADGVDLL 521
                F  ++G + + +   ++ ++ +S+  +++   IG I +    TF EV        
Sbjct: 475 SDMVRFFFNLGKRDQLKKVDMLDIINKSTKKSKKRADIGDIEILDKFTFFEVEKSF---- 530

Query: 522 RRTVKLDKGIQLKYLGGE 539
            +   L+    +K+ G E
Sbjct: 531 -KNEILNNISSMKFKGKE 547


>gi|256819312|ref|YP_003140591.1| DEAD/DEAH box helicase domain-containing protein [Capnocytophaga
           ochracea DSM 7271]
 gi|256580895|gb|ACU92030.1| DEAD/DEAH box helicase domain protein [Capnocytophaga ochracea DSM
           7271]
          Length = 584

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 145/578 (25%), Positives = 263/578 (45%), Gaps = 25/578 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M +FE +   + I +A+S+ G+   + +Q+  +   L    D++  AQTG+GKT AFG  
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  +      +     L ++PTREL +Q+  EL         V  V   GG S+  
Sbjct: 61  LLQLIDTD------SRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A+ 
Sbjct: 175 PQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++  ++ 
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + +        +  PS   I E     +        ++    D    +   L   D +
Sbjct: 355 KTIEKMIGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELKNVDRD 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++      +         +      V      R    + +              + +++G
Sbjct: 415 ELIKKIFSVEFTRFFNYYKNAENLSVENERESRSRGNSDE------------VRYFINIG 462

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +   + + L   L  +  + R  +  + V+   +F    AD  DL+  T   D  +  +
Sbjct: 463 ERDGYDWKSLKDFLKATLNLGRDDVFKVDVKNSFSFFNTDADLSDLVMDTFN-DFQLDGR 521

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           ++  E       +  G   + + DG        +   K
Sbjct: 522 FINVELSTKGAGRDRGGSKRGNDDGRKHGNDEGRNRKK 559


>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
           9312]
          Length = 593

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 151/544 (27%), Positives = 254/544 (46%), Gaps = 25/544 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             Q I  +LS +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 58  FNQSILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLADNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV    +   ++ T        GG     +   L+   
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     ++ +  +VLDEADEML++GF +DIE+I+D  PK ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLNMGFLEDIEWIIDQLPKNKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 233 SATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDA-LKRILELNNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENLGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +   + E   HR GRTGRAGR G ++  +    +     L      
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNHREKHFLRNLENSTRT 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM-------VDVLLAKHDPEK--- 415
            +     PS + I E+  ++++++       + D ++        +D L  KH  +    
Sbjct: 412 KIEEINIPSNKIINEKRMEKLIENVNESSLAKEDNEENKALIIDVLDNLKEKHSMDDSNI 471

Query: 416 -IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFS 470
            +AA  L I        E+ + +   +  DR R +         S             + 
Sbjct: 472 AMAAINLVIGNKAFFVNEDDSWIHKQNNTDRNRSNRNGNNRMRNSNRRNNFQNDSFETYK 531

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
              G         ++  +C S+ IN +SIG I++  D + V++     DL R T    K 
Sbjct: 532 FDFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRETKNKLKK 588

Query: 531 IQLK 534
           I+++
Sbjct: 589 IKVR 592


>gi|313675031|ref|YP_004053027.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941729|gb|ADR20919.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 590

 Score =  270 bits (689), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 155/582 (26%), Positives = 270/582 (46%), Gaps = 23/582 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE +     I +A+ E G+V  T++Q+  +   L  K D++  AQTGSGKT AFGL 
Sbjct: 1   MLTFEELGLKPEILKAILEIGFVEPTAIQQKTIPHLLNTKQDLIALAQTGSGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           + + + +++ +        +L + PTRELA+Q+  +       +  +  V   GG S+  
Sbjct: 61  VINQIDSDSKK------TQSLVLCPTRELAIQIANDFNSYTKYSKKLDVVPVYGGASIET 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L  G  IVVGTPGR+ D I+ K L +  ++ VVLDEADEML++GF+DD++FIL  +
Sbjct: 115 QIKALNKGVQIVVGTPGRVVDLIKRKKLKLEDIEWVVLDEADEMLNMGFKDDLDFILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT+S  +  ++ NY      ++    N+    +++   +V   D+  A+ 
Sbjct: 175 PDQRQTLLFSATMSKEVLRISNNYMNKPEEISSGKRNQGADKVEHFYFVVNGRDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I   +    AI+FC T+      +  L    +    L G+LSQ +R   +   R    +
Sbjct: 235 RIADINPDIYAIIFCRTKRETQEISDQLMADGYNADCLHGDLSQAQRDAVMGRYRKKNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ ++  VI+  +  + E   HRSGRTGRAG+ G+S+ +I      + 
Sbjct: 295 MLVATDVAARGLDVNEITHVINYNIPDDLETYTHRSGRTGRAGKAGISMAIIGPRDINKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH---DP 413
           ++L R    +      P+ +A+ E+     ++     +  +   +  ++ + A+      
Sbjct: 355 KQLERILGKTFTKAEVPAGDAVIEKQLMAFIEKVKATEVEEKQIEPFINNIAAEFEDLSR 414

Query: 414 EKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           E +   F+ +     L   +    ++  +   R RD  R  +   G        +   L+
Sbjct: 415 EDLIKKFVSLEFNKFLDYYKNSADLNQNAKAGRDRDSGRGERSDRG--RKGGDFTKLFLN 472

Query: 473 VGSKQKAEARWLMPMLCRSSGIN-RQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
           +G K    A  L+  +     +      G I VQ   TF+EV +     +   +      
Sbjct: 473 IGEKDNLNAGTLLGWINGLQSVPNGIEFGKIDVQRSFTFMEVESQHEQTILGAL------ 526

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +    G K         G ++ N  D   K+         N
Sbjct: 527 NVSEFDGRKVVAEPKMGGGPRTSNRSDRPDKKRGSGFKKRPN 568


>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 632

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 174/560 (31%), Positives = 263/560 (46%), Gaps = 49/560 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L + G+   T +QE  +   L   D++  AQTG+GKT AFGL L + +   
Sbjct: 61  NLKSDLVANLVKLGFSQPTPIQEKAIPLLLAGSDLIGQAQTGTGKTAAFGLPLLNNIDFS 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA QVG  L       G  V V  GG S   +   L+ GA
Sbjct: 121 K------KCVQALVLAPTRELAQQVGDALATYSGDDGRNVLVVYGGSSYQAQVGGLRRGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D IR   L +  LK +VLDEADEML +GF DDIE IL  +PK R+ ++F
Sbjct: 175 RVVVGTPGRLLDLIRQGSLKLDQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQTMLF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  + ++A  Y      ++I+ +    S I+ R  L+  SD+  AI  +      +
Sbjct: 235 SATLSSRVMSIANRYLHSPESISISPKQMIGSSIEQRYYLINNSDKIAAITRVFEVETVE 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++F  TRA+VS     L    F    LSG+LSQ+ R+  L   + G+ +V +ATDVAA
Sbjct: 295 SALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIKVLVATDVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V + +L  +PE  +HR GRTGRAGR G ++ ++    +    R+ +    
Sbjct: 355 RGLDIDDISHVFNYDLPEDPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTGK 414

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAK-HDPEKIAAGFLR 422
            ++    P+VE I E    + L+  D          E+++V+ L+ +  DP  +AA  L+
Sbjct: 415 KLIKGELPTVEQIEEHRNTQFLERLDVWIRRGRCRGEREIVEALVEQGMDPLDVAAAALK 474

Query: 423 IHRAGL--CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN------------------ 462
           I R        + I PV   +G    +   R  +   G  D                   
Sbjct: 475 IVRKDETKRPIDPIKPVIEDAGGRNRKRGDRNDRGANGRGDRGGRSDSRGGRPQGRRDDR 534

Query: 463 --------------------FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAI 502
                                K     +L  G K       ++  L   +GI+ + +G I
Sbjct: 535 FAKGGDRGPKKKGDDVRQVSDKDMVPLTLDAGKKDGVAVNHIVASLSHFAGISSRELGKI 594

Query: 503 RVQPDLTFVEVSADGVDLLR 522
           R+    + ++V    VD + 
Sbjct: 595 RINETHSSIDVPKGLVDKML 614


>gi|323706324|ref|ZP_08117890.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534376|gb|EGB24161.1| DEAD/DEAH box helicase domain protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 513

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 136/537 (25%), Positives = 253/537 (47%), Gaps = 44/537 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I +A+ + G+   + +Q  ++   L   DV+  A+TG+GKT+A+G  + +   + 
Sbjct: 7   HLNEKILKAIDDMGFEEPSKIQSEVIPVLLEGLDVIGQAETGTGKTLAYGAPIINNFSSN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +         L + PTRELA+QV  EL  +   + V +    GGV + R+ + ++ G 
Sbjct: 67  DGKV------FCLVLTPTRELAIQVNDELARIGKYSKVRLLPVYGGVQIDRQIKAIKRGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I+   L++  ++ +V+DEADEM+D+GF DDI+ I++ + K+R+ +MF
Sbjct: 121 DIVVGTPGRVLDLIKRNVLDLKSVRYLVIDEADEMMDMGFIDDIKEIINHTNKERQTMMF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGA 244
           SAT+   I  LAK Y K   +     +                +      +  +      
Sbjct: 181 SATMPDEIKNLAKKYMKSDAKFISIVKKTMTVSTVQHFYYEVKNQERFESLCRILDVEEP 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC T+  V   T+ +    + V  + G++SQ +R N L+  ++G     +ATDVA
Sbjct: 241 SSTIIFCKTKKEVDELTENMQSRGYNVEGMHGDMSQNQRINTLRKFKEGILDFLVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  VI+  L  + E+ +HR GRTGRA R G++  ++        +R+ +   
Sbjct: 301 ARGIDIENVTHVINYNLPQDVESYVHRIGRTGRANRSGVAYTLVTSREYPALKRIEKATR 360

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
             +  +  P+V+ I E    +++ +       + D K+ V + +    +++   +AA  +
Sbjct: 361 CKIKRKELPTVDDILEVKYNKMIAEIKKTLE-KNDYKRFVPLAMELDEEYNLVDVAAALM 419

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            ++                 G D +R+D              +      +++G K K   
Sbjct: 420 DMYY----------------GEDVYRNDIE------------RDYLRLFINLGRKDKFNK 451

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLK 534
           R  + +      I++  I  I +    +FV V+        D L   +   K I ++
Sbjct: 452 RTAIKLFSD-CRISKNDIQDIDIFEKFSFVNVAKSVAKNIIDQLSGKIIDGKRINVE 507


>gi|167764052|ref|ZP_02436179.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
 gi|167698168|gb|EDS14747.1| hypothetical protein BACSTE_02435 [Bacteroides stercoris ATCC
           43183]
          Length = 644

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 166/585 (28%), Positives = 274/585 (46%), Gaps = 29/585 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQQINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y  +A  + I   N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLHNAKEITIGRRNEGTSNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---P 413
             + R      +    P+ + I E+   +++ +   +   + + +  +  +  K D    
Sbjct: 355 REIERIIGKKFIQGEMPTGKQICEKQLLKVIDELEKVKVNEDEIRDFMSDIYRKLDWLSK 414

Query: 414 EKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           E +    + +     L    +   + + +G +R    +++ + G  +R    G     ++
Sbjct: 415 EDLIKRMVSLEFNRFLDYYRDREEIEIATGSERS---AKSGERGSNARKATPGFKRLFIN 471

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----D 528
           +G         L+ +L  ++   R  +G I +    +F EV       + + +       
Sbjct: 472 LGKMDNFFPNELISLLNNNTR-GRVELGRIDLMQKFSFFEVEDKEAGNVIKALNRANWNG 530

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           + + ++  G E  D         K K   +G     K F G  ++
Sbjct: 531 RKVSVEIAGEEGKD-------APKGKRRNEGGNYGKKEFDGKKRS 568


>gi|218673952|ref|ZP_03523621.1| ATP-dependent RNA helicase protein [Rhizobium etli GR56]
          Length = 499

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 184/361 (50%), Positives = 247/361 (68%), Gaps = 9/361 (2%)

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
           QH DI+YRA++VA SDR+NAI+N+LRY+ A NAIVFCSTRA+V+  T       F VVAL
Sbjct: 58  QHVDIEYRALMVAPSDRENAIINVLRYYEATNAIVFCSTRAAVNHLTARFNNRNFSVVAL 117

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
           SGEL+Q ERS+ALQ MRDGRARVCIATDVAARGIDLP L+LVIHA+L +NPE LLHRSGR
Sbjct: 118 SGELTQNERSHALQAMRDGRARVCIATDVAARGIDLPGLDLVIHADLPTNPETLLHRSGR 177

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           TGRAGRKG+S  ++P + +R+AERL   A +S  W   PS E + ERD +R+L DP+F +
Sbjct: 178 TGRAGRKGISAMIVPLSARRKAERLLENAGISAAWARPPSAEEVNERDDERLLADPIFSE 237

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF- 453
           + Q +E+ +V  LL+ H  EK+AA FLR++R    APE++  V++  G  R R D+    
Sbjct: 238 APQEEEQGLVQQLLSSHGAEKLAAAFLRLYRTNRSAPEDLIEVTVQDGGSRKRRDNAEPY 297

Query: 454 -KVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                G R++F  S+WFS+SVG KQ AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE
Sbjct: 298 APAQKGPREDFGPSAWFSVSVGRKQNAEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVE 357

Query: 513 VSADGVDLLRRTV----KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD---GATKRFK 565
           ++A   D  +  +     L++GI++  L G     R      +  K+S+D   G   R +
Sbjct: 358 IAAASADSFQEALGPNKTLERGIRVTRLSGTPDFSRAAAQKPYAGKSSRDERPGDNFRDE 417

Query: 566 R 566
           R
Sbjct: 418 R 418


>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
 gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
           T-27]
          Length = 594

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 158/568 (27%), Positives = 253/568 (44%), Gaps = 42/568 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EAL   GY   T VQ A + P L  KDVL  A TG+GKT AF L L + +  + 
Sbjct: 21  VHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAATGTGKTAAFSLPLLTRIAEKG 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    + P  L + PTRELA+QV   +       G+      GG S+  + R L+ G  
Sbjct: 81  RRA--GNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAVYGGASMELQVRALRRGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGR  DHI+   L    L AVVLDEADEMLD+GF +++E ILD++P+ ++  +FS
Sbjct: 139 VVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEELEAILDATPENKQTALFS 198

Query: 187 ---ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
                    I                     + + +   A +V+ + +  A+  +L    
Sbjct: 199 ATLPPRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYVVSRAHKMPALARVLDIEQ 258

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AIVFC TR  V   ++ L     +  AL G LSQ +R   +Q  R  +  + IATDV
Sbjct: 259 PTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDRVMQKFRARKVDLLIATDV 318

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  +  V++ ++  + E  +HR GRTGRAGR+G++V        R    + R+ 
Sbjct: 319 AARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAVTFAEPRENRLLRNIERQT 378

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDPEKIAAGF 420
              +     P+V  +R    + +++  L    ++GD +     V+ L  + D   +AA  
Sbjct: 379 GQKIEIAQVPTVADLRAHRRE-LVRATLREAVLEGDLESWRGLVESLAGELDIMDVAAAA 437

Query: 421 LRIHRAGLCAPE-EITPVSLVSGRDRFR-----------------------------DDS 450
           +++  A     E EI  V+    R   R                              +S
Sbjct: 438 VKLVAARSEGEEAEIPAVTPRPDRGGERSFDRGDRGDRGGERGSREGARDLRGKPIGRES 497

Query: 451 RAFKVGGGSRDNFKGS---SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
           R       ++   + +   +   +  G + K     L+  +   +G++   IGAI++   
Sbjct: 498 RGATGERSAKPRREPTWQAARLWIGAGRRLKMRPADLVGAIANEAGVDASQIGAIQIADG 557

Query: 508 LTFVEVSADGVDLLRRTVKLDKGIQLKY 535
            + VEV     + +   ++  K   LK 
Sbjct: 558 FSTVEVPETIAENVINALRGTKIKGLKV 585


>gi|257126351|ref|YP_003164465.1| DEAD/DEAH box helicase [Leptotrichia buccalis C-1013-b]
 gi|257050290|gb|ACV39474.1| DEAD/DEAH box helicase domain protein [Leptotrichia buccalis
           C-1013-b]
          Length = 571

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 154/567 (27%), Positives = 269/567 (47%), Gaps = 42/567 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M+ FE+  +   +  ALS++G+   + +Q+ ++   L+E+  ++  AQTG+GKT AFG+ 
Sbjct: 1   MQRFEDFGLSTEMLNALSKKGFEEPSEIQKLVVPELLKERTHLIGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+ A+           AL +APTRELA QV  E+  L  +  + V    GG S+  +
Sbjct: 61  ILETIDAD-------KTVRALILAPTRELANQVSDEIYSLKGEKDIKVLAVYGGASIENQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IVVGTPGR+ D I  K L ++ L   VLDEADEML++GF +DIE IL+ + 
Sbjct: 114 IKRLKAGVDIVVGTPGRVMDLINKKVLKVNGLDYFVLDEADEMLNMGFLEDIEEILEKTN 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +++ML FSATI  AI  +AK +  +   + +  +    +  +     V   D+  A+  
Sbjct: 174 DEKKMLFFSATIPKAILAIAKRFMPEHKLLKVEKKELTTNLTEQIYYEVKQEDKFEALCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L Y      IVFC T++ V   T  L    +    + G+++Q  R  AL + +     +
Sbjct: 234 VLDYEQNFYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKQILTI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  VI+  +    E+ +HR GRTGRAG KG+++  +      +  
Sbjct: 294 LVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREASKLA 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ R     +  E  P+VE I E   + ++   D +  +S     +++   L+   D  +
Sbjct: 354 QIKRVTKTDIKREDIPNVEEILEAKKEALVAYVDEIIKESDFNAYEELAQRLIEGRDARQ 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  LR        P+    ++ V                          +   +++GS
Sbjct: 414 VLASVLRHVYEDEFLPDNYNEIADVK-------------------VKINDKTRLFIALGS 454

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K       L+ +L + +    + +  +++    +F+ V     + + R +   K      
Sbjct: 455 KDGYNVGRLLDLLNKKARTPGRKVKDVKIMDKYSFITVPLQEAEYIMRALNSKK------ 508

Query: 536 LGGEKP---DFRGYKSSGFKSKNSQDG 559
               KP   +  G ++ G +  + + G
Sbjct: 509 --DAKPLVEEATGSRNGGGEKGDKKSG 533


>gi|329956340|ref|ZP_08296937.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328524237|gb|EGF51307.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 645

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 276/587 (47%), Gaps = 35/587 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQQINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y  +A  + I  +N   +++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNEGTNNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   AL GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADALHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +      L  
Sbjct: 355 REIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFMPDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              E +    + +     L    +   + + +G +R     ++ + G  +R    G    
Sbjct: 412 LSKEDLIKRMVSLEFNRFLDYYRDREEIEIATGSERS---VKSGERGSSARQAAPGFKRL 468

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL-- 527
            +++G         L+ +L  ++   R  +G I +    +F EV     + + + +    
Sbjct: 469 FINLGKMDNFFPNELISLLNSNTR-GRVELGRIDLMQKFSFFEVEEKEANNVVKALNRAN 527

Query: 528 --DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              + + ++  G E  D         K K   +G     K F    +
Sbjct: 528 WNGRKVSVEIAGEEGKD-------APKGKRRAEGGNYGKKEFDSKKR 567


>gi|262066543|ref|ZP_06026155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379777|gb|EFE87295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium
           periodonticum ATCC 33693]
          Length = 528

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 156/548 (28%), Positives = 254/548 (46%), Gaps = 35/548 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + I + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLGEKILKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +          F  +    A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIEN-------FEHSDHIQAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  + 
Sbjct: 120 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFVEDIEKILTFTN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +RML FSAT+ P I  +AK + K+   + + S        +     V   D+  A+  
Sbjct: 180 DDKRMLFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDINDLSHVINYAIPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   + E 
Sbjct: 360 QIQKAVKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G     +++G 
Sbjct: 420 IVASLLKLTYSDVLDESNYNEISPVKMED-------------------TGKIRLFIAMGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGI 531
           K     + L+  + + + + +  I    V    +FV V    +   V+      K  K +
Sbjct: 461 KDGMTPKKLVDFIVKKAKVKQAYIKNAEVYDAFSFVSVGFKEAEIIVEAFAEIRKGKKPL 520

Query: 532 QLKYLGGE 539
             K    +
Sbjct: 521 IEKAKSKK 528


>gi|309774568|ref|ZP_07669594.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917683|gb|EFP63397.1| ATP-dependent RNA helicase, DEAD/DEAH family [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 585

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 159/581 (27%), Positives = 264/581 (45%), Gaps = 30/581 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +A+ E GY N T +Q   +   +  KDVL  + TG+GKT AFG+  
Sbjct: 1   MTTFNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +            P AL I PTREL  QV  EL        GV +    GG  + R+
Sbjct: 61  IEKVC------QGTRNPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IVVGTPGR+ DH+  + L +     V+LDEADEML++GF++DIE IL   P
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLNRRTLKLDDTNMVILDEADEMLNMGFKEDIEEILSMMP 174

Query: 178 KKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +        FSAT    I  + K +Q D VRV I S  R    ++          + NA+
Sbjct: 175 EGNEHQTVLFSATWPAEILRITKQFQNDPVRVEIKSSQRTIDTVEQIYYEAPRGKKANAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L ++     ++FC+T+  V      L +H  + ++L G++ Q+ RS  ++  R G  
Sbjct: 235 RVLLSHYDPDLCMIFCNTKKMVDELCDELNKHDIKAISLHGDMKQEFRSRVMEQFRSGNY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ ++    QR 
Sbjct: 295 PILIATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRA 354

Query: 356 -AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               + R    +++    P+   + E +    +      ++      +    +  +   E
Sbjct: 355 GIRDIIRYTKTNIIRHALPTSAQMMEANRNAFVAK--VKEACDEGITEESMEIANELIAE 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IA   +      +    EI  +       R+               +   +     +VG
Sbjct: 413 GIALENIISALISMTYKNEIIDIEAEEDAKRY--------------ASAFDAISLKFNVG 458

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQ 532
                +   ++  +   +G+N ++IG I V+ D T V+V A  VD +   ++    +G++
Sbjct: 459 RNHGVQPGNIVAAIIEETGLNGKAIGRIDVRKDFTLVDVEASKVDAVLNNMQRSHIRGVE 518

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           +       P  +    SG    +S  G   +  R +    N
Sbjct: 519 VMVEIDSAPKRKNNNRSGNGRNSSSKGGYNKGGRGRSYDNN 559


>gi|294783794|ref|ZP_06749118.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
 gi|294480672|gb|EFG28449.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Fusobacterium sp.
           1_1_41FAA]
          Length = 529

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 155/554 (27%), Positives = 257/554 (46%), Gaps = 37/554 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + + LS++GY + T +Q   +   L  +KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGLGEKVLKVLSKKGYESPTPIQRLTIPALLKNDKDIIGQAQTGTGKTAAFSLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +       +          A+ + PTRELA+QV  E+  L     + V    GG S+  +
Sbjct: 67  IIENFETSDHHI------QAIVLTPTRELALQVAEEMNSLSTSKKMKVIPVYGGQSIDIQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ ++ G  +VVGTPGR+ D I  K L ++ LK  VLDEADEML++GF +DIE IL  + 
Sbjct: 121 RKLIKTGVDVVVGTPGRVIDLIERKLLKLNSLKYFVLDEADEMLNMGFIEDIEKILTFTN 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +RML FSAT+ P I  +AK + K+   + + S        +     V   D+  A+  
Sbjct: 181 DDKRMLFFSATMPPEIMKIAKTHMKEYEVLAVKSRELTTDLTEQIYFEVNERDKFEALCR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 241 IIDLTKEFYGIIFCRTKTDVNEIVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKTKKINI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 301 LVATDVAARGIDINDLSHVINYAVPQEVESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    RI+ D   + +D+     KK+   LL   + E 
Sbjct: 361 QIQKAVKKEIRKESLPDVKDVIQAKKFRIIDDIGQILIDNDYDKFKKLAKDLLNMEEAEN 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++  + +        +S V   D                    G +   +++G 
Sbjct: 421 IVASLLKLTYSDVLDESNYNEISPVKMED-------------------TGKTRLFIAMGR 461

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           K     + L+  + + + + +  I    V    +FV V+    +++            + 
Sbjct: 462 KDGMTPKKLVDFIVKKAKVKQAYIKNAEVYDAFSFVSVAFKEAEIIVEAFA-------EI 514

Query: 536 LGGEKPDFRGYKSS 549
             G+KP     KS 
Sbjct: 515 RKGKKPLIEKAKSK 528


>gi|160902412|ref|YP_001567993.1| DEAD/DEAH box helicase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360056|gb|ABX31670.1| DEAD/DEAH box helicase domain protein [Petrotoga mobilis SJ95]
          Length = 530

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 148/536 (27%), Positives = 251/536 (46%), Gaps = 34/536 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLA 57
           M  F+   +   I  A+  +GY   T +QE ++   L  K+ V+  AQTG+GKT AFG+ 
Sbjct: 1   MTKFQQMGLSDNILSAIDRKGYEAPTPIQEKVIPLLLSGKNNVIGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L         A+   AL + PTRELA+QV  E++ L     + +    GGVS+  +
Sbjct: 61  LIERLD------EKANDVQALVLTPTRELALQVCNEIDSLKGNKRLNLLPVYGGVSIGNQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    +VVGTPGR+ DH+    L+I+ +K +V+DEADEMLD+GF +D+E IL  + 
Sbjct: 115 IRALKRRVDLVVGTPGRIIDHLNRGTLDITKIKYLVIDEADEMLDMGFIEDVEMILSKTN 174

Query: 178 KKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           K++++LMFSAT+   I           +    V    E+           +++ S++   
Sbjct: 175 KEKQILMFSATMPQRIVTLARKHMGNFETVTTVQENKEDITVKKAKQIYYMISESNKIEL 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++        +VF  T+         L +  ++  AL+G++SQ +R   +   +  R
Sbjct: 235 LSRLIDIDTNFYGLVFTKTKVQSEEIANELIKKGYEAEALNGDVSQNQRERIMDRFKSKR 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ I+TDVAARGID+ +L+ VI+  L  NPEN +HR GRT RAG +G ++  +     R
Sbjct: 295 IKILISTDVAARGIDIDNLKYVINYSLPQNPENYIHRIGRTARAGNEGTAITFVTPTEYR 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHD 412
           R   +   +   +     P  + I     ++I  +        I    + + + +L + D
Sbjct: 355 RFMFIKHSSKAIIEEAKIPQAKDIVNAKVEKIKDEIKSNLAKDIDPIYEILAETILEETD 414

Query: 413 PE--KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            E  +I A  L+    G+   E    +  V    + +D                      
Sbjct: 415 QEPSQIIASILKYFYGGILKEENYNKIKEVKNSSKSKD------------------QRLF 456

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +++GS  K   + L   + R +G+  + I  I+V    +FV V ++  + +    K
Sbjct: 457 VALGSSSKMTPKKLAEFIERETGVTIKKIKDIQVMEKFSFVTVPSEQAEAIIEIFK 512


>gi|262383201|ref|ZP_06076338.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298373901|ref|ZP_06983859.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|262296079|gb|EEY84010.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|298268269|gb|EFI09924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
          Length = 609

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 161/596 (27%), Positives = 275/596 (46%), Gaps = 38/596 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +            P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKINVSQ------YQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL + 
Sbjct: 115 QIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A+ 
Sbjct: 175 PENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +     + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  N        P+ E I E+    ++     ++ ++ +E+++  ++      L  
Sbjct: 355 REIERIINKKFDRGEMPTGEQICEKQLFNLVDQ---IEKVKVNEEEIASLMPSIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D E I    + +    +    +      V       +  R     GG  +  +G + F 
Sbjct: 412 LDKEDIIKRVVSLEFNRMIDYYKDNDDIEVVD----ENAPRERGKRGGRGEAEEGYTRFF 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---- 526
           ++ G   +     L+ ++       +  IG I ++ + +F EV     + +  ++     
Sbjct: 468 INFGKTDELTPPQLIELV-NKCVPGKVRIGRIDLRDNFSFFEVEEGEANRVMDSMNGFEV 526

Query: 527 LDKGIQLKY--------LGGEKPDFRGYKSSGFKSKN--SQDGATKRFKRFKGASK 572
             + I ++          GG  P       +GF+ +    + G   R +  +G   
Sbjct: 527 DGRRISVEPAQAKGEGGKGGRSPRGGSRGGNGFRDRRDSGRGGRDSRRESDRGDRG 582


>gi|33861657|ref|NP_893218.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634234|emb|CAE19560.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 592

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 148/536 (27%), Positives = 253/536 (47%), Gaps = 22/536 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             ++I  +L  +GY   T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 57  FNKLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLENNK 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV    +   A+ T +      GG     +   L+   
Sbjct: 117 ESNAK-----VLVMTPTRELATQVADSFKSYSAESTNLRTLAIYGGTDFRNQISSLKRKT 171

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DHIR     I+++  +VLDEADEML +GF +DIE+I+D  P+ ++M++F
Sbjct: 172 DIVVGTPGRIMDHIRQGTFKINNISCLVLDEADEMLKMGFLEDIEWIIDKLPENKQMVLF 231

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  +   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 232 SATMPNEIRNIAKKYLNEPAEILIKSVKQETQLITQKYINVQRHHKLDA-LKRILEITNE 290

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 291 GVIIFVRTKLLTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAA 350

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LVI+ +   + E   HR GRTGRAGR G ++  + Q  +     L      
Sbjct: 351 RGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRN 410

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK--- 415
            +     P+ + I E+   +++   +   LD    +EKK     ++D L  KH  E    
Sbjct: 411 KIEEIEIPNNKIINEKRMGKLITNLNESSLDQENNEEKKALMIDILDTLREKHSMEDSNI 470

Query: 416 -IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS----SWFS 470
            +AA  L I        E+ + +   +  DR R +         +             + 
Sbjct: 471 AMAAINLAIGNKSFFINEDESWLYRQNNSDRNRSNRNGNNRMRNTNRRNNYQNDSFETYK 530

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + G   +     ++  +C S+ IN + IG I++  + + V++  D    ++  +K
Sbjct: 531 FNFGKMDRVRVANIISSICTSTNINGRLIGKIQIFNEYSLVDLPRDLHGEVKNKLK 586


>gi|325285240|ref|YP_004261030.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320694|gb|ADY28159.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 602

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 149/533 (27%), Positives = 262/533 (49%), Gaps = 16/533 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE   + + + +A+ + G+ + + VQE  +   L E  D++  AQTG+GKT AFG  
Sbjct: 1   MTKFEALGLDKSLLDAIVDLGFESPSEVQEKAIPILLNEDTDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +       S +     L ++PTREL +Q+  EL+       G+ V    GG S+  
Sbjct: 61  LIQKID------SSSRTTQGLILSPTRELCLQITNELKAYSKYEKGLNVVAIYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ GA IVV TPGR+ D I    +NIS L   VLDEADEML++GF +DI+ IL ++
Sbjct: 115 QANQIRRGAQIVVATPGRIKDMISRGMVNISKLDYCVLDEADEMLNMGFYEDIKDILSNT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P ++   +FSAT+   ++T+AK +  +   + + S+N   + + +   +V   DR  A+ 
Sbjct: 175 PDEKFTWLFSATMPREVSTIAKKFMHNPQEITVGSKNAGATTVQHEYYVVGGRDRYPALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+    R  + L E  +   AL G+LSQ +R   +   R  + +
Sbjct: 235 RLADTNPDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNAFRKKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTRSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           + L R+     + +  P+   I E     +   ++D    D ++      ++ +L   D 
Sbjct: 355 KALERKLQTEFLSKKIPTGMEICEIQLHHLANKIKDTEINDEVES-YLPAINEILEGVDK 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    + +        +       ++G DR     R  +    +     GS  + ++V
Sbjct: 414 EDLIKKIVSVEFTRFF--DYYNKTRDLNGSDRGERGDREERGKNKAEIPTSGSVRYFINV 471

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G +   +   L   L  + G+ ++ +  + V+   +F    A+  + +  T  
Sbjct: 472 GERDDYDWMTLKDFLRNTVGLGKEDVFKVDVKESFSFFNTDAEHSEKVLSTFT 524


>gi|154490038|ref|ZP_02030299.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
 gi|154089480|gb|EDN88524.1| hypothetical protein PARMER_00267 [Parabacteroides merdae ATCC
           43184]
          Length = 607

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 164/605 (27%), Positives = 272/605 (44%), Gaps = 48/605 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L  + DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGDDNDVIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +            P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKIDVTT------YHPQALVLCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G H+VV TPGRL D +  K +++S +K V++DEADEML++GF D I  IL   
Sbjct: 115 QIKTLKRGVHVVVATPGRLLDLMNRKTVDLSLVKNVIMDEADEMLNMGFTDSINAILAEV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I  + K Y K+   + I ++N  + +I     +V   D+  A+ 
Sbjct: 175 PENRNMLLFSATMPKEIANITKKYMKNPKEIVIGNKNEGNKNIRDIYYMVQARDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  ++     IVFC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIADFYPNIYGIVFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRVKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+S+ +     + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGISISICHVKEKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  N        P+  AI E+    ++     ++ ++ +E+++  ++      L  
Sbjct: 355 REIERIINKKFEKGEMPTGHAICEKQLFNLVDQ---IEKVKVNEEEIASLMPQIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D E I    + +    +    +                SR+ +    +    +G S F 
Sbjct: 412 LDKEDIIKRVVSLEFNRMIDYYKDADEIQQVD----ERSSRSERGERRAHAAEEGYSRFF 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---- 526
           L+ G         L+ ++       +  IG I ++ + +F EV       +  ++     
Sbjct: 468 LNFGKADGLYPNQLIELV-NKCVPGKVRIGKIDLRENFSFFEVEEGEAQRVMDSMNGFEV 526

Query: 527 LDKGIQLKYL---------------GGEKPD-----FRGYKSSGFKSKNSQDGATKRFKR 566
             + I ++                 GG + D      RG K SG +  +  D   ++ +R
Sbjct: 527 DGRRISVEPAQGKKEEGGRGGKRSYGGRRSDDGYKGKRGSKDSGRRGGDRSDRTFRKDER 586

Query: 567 FKGAS 571
                
Sbjct: 587 DSDRP 591


>gi|189464961|ref|ZP_03013746.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
 gi|189437235|gb|EDV06220.1| hypothetical protein BACINT_01305 [Bacteroides intestinalis DSM
           17393]
          Length = 659

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 169/589 (28%), Positives = 275/589 (46%), Gaps = 30/589 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKNFEELGLSPEIRRAIEEMGYECPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +N        P +L + PTREL +Q+  +L       TG+ V    GG S+  
Sbjct: 61  LIQKINVKN------RIPQSLILCPTRELCLQIAGDLNDYSKYITGLRVLPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K ++++ ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKQGVHIIVATPGRLLDLMERKTVSLTTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y +DA  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLRDAKEITIGRKNESTSNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQDGYNADSLHGELSQAQRDAVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 ILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---- 412
             + R  +   +    P+ + I E+   +++ D   +   + D    +  +  K D    
Sbjct: 355 REIERIISKKFIIGEMPTGKQICEKQLLKVIDDLEKVKVNEEDMADFMPEIYRKLDWLSK 414

Query: 413 ----PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  ++  F R         E   P      R+    + R+      SR    G + 
Sbjct: 415 EDLIKRMVSHEFNRFSEYYRNREEIEMPTDSRGERNGRSGNERSGDRRSSSRKAEPGFTR 474

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL- 527
             +++G         L+ +L  ++   R  +G I +  + +F EV       + + +   
Sbjct: 475 LFINLGKMDNFFPNELISLLNSNTR-GRVELGRIDLMKNFSFFEVDEKEAGNVVKALNRA 533

Query: 528 ---DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
               + + ++  G E            K +   +G++   K F G  ++
Sbjct: 534 NWNGRKVSVEIAGEE-------GKEAPKGRRKSEGSSYSKKEFDGKKRS 575


>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 591

 Score =  268 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 152/574 (26%), Positives = 258/574 (44%), Gaps = 62/574 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+++ G+   + +Q   +   L   DV+  +QTGSGKT AF +     +    
Sbjct: 11  LSPELLKAVAKMGFEEASPIQSETIPQLLTGADVVGLSQTGSGKTAAFAIPAIERVDGN- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  AP  L + PTRELA+QV  E  +  + K GV      GG S  R+ R L++GA
Sbjct: 70  -----LRAPQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYDRQLRGLRDGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DH+  K L +  +  ++LDEAD MLD+GFRDDIE IL  +P +R+ + F
Sbjct: 125 QIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILGQAPAERQTVFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  L K Y K+ V V I ++      ID     V    +   +  ++     K
Sbjct: 185 SATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEVDRRSKLEVLCRLIDLQDIK 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC+T+  V   +  L    +    L G++SQ  R   +   R       +ATDVAA
Sbjct: 245 YGIIFCATKMMVDELSDHLKARGYSSDKLHGDISQSMRERVVAKFRKRGFEFLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+E+V + +L  + E+ +HR GRTGRAGR G +V  +      + +++ R    
Sbjct: 305 RGLDVDDIEVVFNYDLPQDAEDYVHRIGRTGRAGRSGRAVTFVAGREIWKMQQIIRFTKG 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGF 420
            V  E  PS E + ++     L++    ++++  E K  D ++ +     +    IA+  
Sbjct: 365 KVRRERVPSAEEVEQKRTSEFLEN--LRETLEKGEYKRQDTVIDQLLDQGYSATDIASAL 422

Query: 421 L------------------------------------------------RIHRAGLCAPE 432
           +                                                R HR      E
Sbjct: 423 IHLLGGDKPAAQPIVEEQPRREYPNYQSREYPKYESRKSSPRETEARAPREHRESREPRE 482

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
                   +  +R    SR+ +    +  + +G      +VG+  + E    + ++   +
Sbjct: 483 AAARKEFHAPAERREKPSRSPRREPSAASHEEGMVRLVFNVGNAHQIEPGDFVGVIAGVT 542

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            + ++ +G I +    + V+VS +  D + + + 
Sbjct: 543 RLPKEVVGRIEILDRESLVDVSDECADQVLKKLN 576


>gi|257463152|ref|ZP_05627553.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|317060745|ref|ZP_07925230.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
 gi|313686421|gb|EFS23256.1| ATP-dependent RNA helicase [Fusobacterium sp. D12]
          Length = 528

 Score =  268 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 149/531 (28%), Positives = 253/531 (47%), Gaps = 31/531 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           +K F ++   + + +ALS++GY   T +Q   +   L   KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRDLGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +            + + PTRELA+QV  E+  L +   + +    GG S+  +
Sbjct: 67  ILENIEHQ-------DKIQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ L+ GA I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ 
Sbjct: 120 RKLLRTGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AK + KD   + + +        D     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKARKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ R     +  E  P V+ + +    +I +  D + L+      KK+   LL K + E 
Sbjct: 360 QIQRIVKTEIRKEQVPEVKDVIQAKKFQIQKDIDEILLEGEYDKFKKLAQDLLKKEEAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++    +        +S                          G +   +++G 
Sbjct: 420 IVASLLKLAYEDVLDESNYNEISSTK-------------------TVGSGKARLFVALGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K    A+ L+  + + + +  + I  + V    +F+ V     +++  + K
Sbjct: 461 KDGMTAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITVPFKEAEIIIESFK 511


>gi|218131753|ref|ZP_03460557.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
 gi|217986056|gb|EEC52395.1| hypothetical protein BACEGG_03374 [Bacteroides eggerthii DSM 20697]
          Length = 644

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 274/587 (46%), Gaps = 33/587 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQQINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP I  ++K Y  +A  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEIARISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +      L  
Sbjct: 355 REIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFMPDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  ++       +++  + GG +R    G     
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRNREEIEIAT--GSERNTKGSERGGSTRQAAPGFKRLF 469

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +    +F EV    V  + + +     
Sbjct: 470 INLGKMDNFFPNELISLLNSNTR-GRIELGRIDLMQKFSFFEVEEKEVGNVVKALNRANW 528

Query: 528 -DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + + ++  G E  D         K K   +G +   K F G  ++
Sbjct: 529 NGRKVSVEIAGEEGKDT-------PKGKRRSEGGSYGKKEFDGKKRS 568


>gi|148244979|ref|YP_001219673.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326806|dbj|BAF61949.1| ATP-dependent RNA helicase DeaD [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 608

 Score =  267 bits (682), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 145/577 (25%), Positives = 266/577 (46%), Gaps = 25/577 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   I   L   GY   + +QE  +   L  KD++  AQTG+GKT AF L L   
Sbjct: 14  FERLGLSNTILNVLDSIGYETPSPIQEQCITHLLNNKDIIGQAQTGTGKTAAFVLPLLDK 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           +          +AP  L +APTRELA+QV   ++           +   GG S   + R 
Sbjct: 74  INLN------INAPQLLILAPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQSYDIQLRP 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H +VGTPGR+ DHI  K L + +LK+ VLDEADEML +GF DDI++I+   P++R
Sbjct: 128 LKRGVHAIVGTPGRVMDHIEKKTLKLDNLKSFVLDEADEMLKMGFIDDIKWIMQRIPEQR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           ++ +FSAT+   I  +AK +      + I ++    + I  +  +V   S++  A+  IL
Sbjct: 188 QIALFSATMPNVIKKIAKQFLNQPKIIKIKTKTETATTITQKYCMVGGLSNKLEALTRIL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+   +  T+ L+   F   A++G++ Q +R   +   + G+  + I
Sbjct: 248 EVTVFDAMIIFVRTKTLTTELTEKLSARGFSADAINGDIQQNQRERIINDYKQGKIDILI 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  +  V++ ++  + E+ +HR GRTGRAGRKG ++  +    +R    +
Sbjct: 308 ATDIAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGEAILFVSNRERRMLNTI 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
                  +     PSV+ I  +  +   Q+   + +I     ++   L+ +   E     
Sbjct: 368 EHVTRQKITPIELPSVKIINAKRIETFKQN--IIQTINNQNLEIFKKLVGEFQQENPKIE 425

Query: 415 --KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             +I++    I +            +L   +        + +              + + 
Sbjct: 426 ISQISSALAYIAQGNEPLLLSEKESNLGFNQTPKEKIIISIRAKPLKGFPKIPMCRYKIE 485

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLD 528
           VG+    +   ++  +   + ++ + IG+I++    + +++ A   +    +L++T+   
Sbjct: 486 VGNNNNVKTSNILGAIANKTNMDSEYIGSIQIFDHFSTIDLPAKISNEVFGVLQKTIVCG 545

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
           K + +  L   K + +       + +N   G   + K
Sbjct: 546 KHLNIVEL--TKKNNKDTIVGRTEKRNLNRGKFSKNK 580


>gi|308272111|emb|CBX28719.1| DEAD-box ATP-dependent RNA helicase cshA [uncultured
           Desulfobacterium sp.]
          Length = 548

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 157/556 (28%), Positives = 271/556 (48%), Gaps = 25/556 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLAL 58
           K F+++     + +A++++G+   T++Q   +    R+  +++V AQTG+GKT AFGL L
Sbjct: 12  KTFKDLGLSAKVLDAINKKGFEEPTAIQVMTIPVMQRDDTNIIVQAQTGTGKTAAFGLPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +S   AL + PTRELA+QV  E+  L     +V+A   GG S+ ++ 
Sbjct: 72  VEMVS------TGSSMVQALILVPTRELAIQVSEEINSLRGNKDIVIAPIYGGQSIDQQL 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G HIVVGTPGR+ DH+  K L +  ++ ++LDEADEML++GF +DIE I+  +  
Sbjct: 126 RRLQKGVHIVVGTPGRVIDHLNRKTLKLEKIEHLILDEADEMLNMGFIEDIEEIMKHTNP 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +R L+FSATI   I  LA  Y K    + +  E    +  +     V   D+  A+  I
Sbjct: 186 DKRTLLFSATIPQRIKDLAHKYMKGYEFLKVKKEQLTTNLTEQIYFEVKAHDKFEALCRI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++FC T++ V      L +  +   A+ G++SQ +R   L+  +  R  + 
Sbjct: 246 IDIKDGFYGLIFCRTKSDVDSVATHLMDRGYDAEAIHGDISQAQRERTLEKFKKQRVNIL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ +L  VI+  L  + E  +HR GRTGRAG  G ++  I  +  +    
Sbjct: 306 VATDVAARGIDVNNLTHVINYSLPHDTEAYVHRIGRTGRAGNVGTAITFITPSEYKGLMF 365

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + R A   +     P V+ I +   ++I  D   +  + I          +L  + PE+I
Sbjct: 366 IQRNAKTDIKKSKVPKVKDIIKAKKKKIYDDLTTILKEEIDTAYLSWAVRMLEDNKPEEI 425

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A  L         P+    +  +  + +              + N +G +   +++G +
Sbjct: 426 LAAVLNYCFEEELNPDAYGEIEEIGAKVK-------------QQLNKQGKARLFVALGKQ 472

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            K   R L+ ++   S +  + I  I++    +F+ V  +  +++  + K +KG +    
Sbjct: 473 DKTSPRKLVELIGSKSSVKSKDISEIQIMDKFSFITVPFEKAEIIVASFK-EKGRKPLIS 531

Query: 537 GGEKPDFRGYKSSGFK 552
             +K     YK  G +
Sbjct: 532 HAKKDGKSTYKDKGAR 547


>gi|313898319|ref|ZP_07831856.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
 gi|312956701|gb|EFR38332.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium sp. HGF2]
          Length = 585

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 156/557 (28%), Positives = 257/557 (46%), Gaps = 30/557 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +A+ E GY N T +Q   +   +  KDVL  + TG+GKT AFG+  
Sbjct: 1   MTTFNELQISSEVMKAVEEMGYENATDIQAQSIPLIMEGKDVLGRSNTGTGKTAAFGIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +            P AL I PTREL  QV  EL        GV +    GG  + R+
Sbjct: 61  IEKVC------QGTRYPNALIICPTRELVTQVATELRKFSKYKEGVKIVPIYGGQPIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IVVGTPGR+ DH+  + L + +   V+LDEADEML++GF++DIE IL   P
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLNRRTLKLDNTNMVILDEADEMLNMGFKEDIEEILSMMP 174

Query: 178 KKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +        FSAT    I  + K +Q D VRV I S  R    ++          + NA+
Sbjct: 175 EGNEHQTILFSATWPAEILRITKEFQNDPVRVEIKSAQRTIDTVEQIYYDAPRGKKANAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L ++     ++FC+T+  V      L +H  + ++L G++ Q+ RS  ++  R G  
Sbjct: 235 RVLLSHYDPDLCMIFCNTKKMVDELCDELNKHNIKAISLHGDMKQEFRSRVMEQFRSGNY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARGID+ D++LV++ ++  + E  +HR GRTGRAG+KG+++ ++    QR 
Sbjct: 295 PILIATDVAARGIDVDDIDLVVNFDIPQDNEYYIHRVGRTGRAGKKGLAITLVSGGKQRA 354

Query: 356 -AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               + R    ++V    P+   + E +    +      ++      +    +  +   E
Sbjct: 355 GIRDIIRYTKTNIVRHALPTSAQMMEANRNAFVAK--VKEACDEGITEESMEIANELMAE 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            IA   +      +    EI  +       R+               +   +     +VG
Sbjct: 413 GIALENIISALISMTYKNEIIDIEADEDVKRY--------------ASAFDAITLKFNVG 458

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQ 532
                +   ++  +   SG+N ++IG I V+ D T V+V A  VD +   ++    +G++
Sbjct: 459 RNNGVQPGNIVAAIIEESGLNGKAIGRIDVRKDFTLVDVEASKVDAVLSNMQRSHIRGVE 518

Query: 533 LKYLGGEKPDFRGYKSS 549
           +       P  +    S
Sbjct: 519 VMVEIDSAPKRKNSSRS 535


>gi|123968740|ref|YP_001009598.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
 gi|123198850|gb|ABM70491.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           AS9601]
          Length = 593

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 153/544 (28%), Positives = 257/544 (47%), Gaps = 25/544 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 58  FNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVG-RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV      +    +        GG     +   L+   
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     I  +  +VLDEADEML++GF +DIE+I+D  P+ ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 233 SATMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDA-LKRILELNNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L      
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRT 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKK-----MVDVLLAKHDPEK--- 415
            +     PS + I E+  ++++   +  FL   + +E K     ++D L  K+  ++   
Sbjct: 412 KIEEINIPSNKIINEKRMEKLIDNVNESFLAKDENEENKALIIDVLDNLKEKYSMDESNI 471

Query: 416 -IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFS 470
            +AA  L I        E+ + ++  +  DR R +  +      S             + 
Sbjct: 472 AMAAINLVIGNKSFFVDEDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETYK 531

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            + G         ++  +C S+ IN +SIG I++  D + V++     DL R T    K 
Sbjct: 532 FNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRETKNKLKK 588

Query: 531 IQLK 534
           I+L+
Sbjct: 589 IKLR 592


>gi|281422387|ref|ZP_06253386.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403550|gb|EFB34230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 657

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 152/543 (27%), Positives = 253/543 (46%), Gaps = 24/543 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+ N   VQE ++   L  + DV+  AQTG+GKT ++G+ 
Sbjct: 1   MKTFEELGVSEEIRRAIEELGFENPMPVQEEVIPYLLGNKNDVIALAQTGTGKTASYGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           +           + +    A+ ++PTREL +Q+  +L        G+ +A   GG  +  
Sbjct: 61  VIQK------TDASSKQTQAVILSPTRELCLQIADDLNSFAKYIDGLHIAAVYGGTDIGS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++G  I+V TPGRL D I      + ++  VVLDEADEML++GF + I  I ++ 
Sbjct: 115 QIRTLKHGVQIIVATPGRLLDLINRGVAQLENVNNVVLDEADEMLNMGFSESINAIFENV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R  L+FSAT+S  I  +A NY  D   + + S N     +++   LV   D+  A+ 
Sbjct: 175 PEDRNTLLFSATMSKDIEKIALNYLHDHKEIVVGSRNEGAEHVNHIYYLVNAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ ++    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R+   +
Sbjct: 235 RVVDFYPRIFAIIFCRTKLETQDIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRNHTVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  +  +  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDVASYTHRSGRTGRAGKKGTSISIIHTREKFKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            ++ ++     V    P+ E I ++   + + D +  D  +         ++      D 
Sbjct: 355 RQIEKQIGKEFVDGVLPTPEEICKKQLFKTMDDIMKTDVDEDQIEPYMAEINRQFEYIDK 414

Query: 414 EKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF-----KVGGGSRDNF 463
           E I    +     +       APE I P +    R      SR         G    +  
Sbjct: 415 EDIIKKMVTITFGKFLDYYKNAPEIIKPETGKGSRGGEGRGSRGEGRGKVSNGRRKHETE 474

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G     +++G         +M  L +     RQ +G I +     ++EV  +    + +
Sbjct: 475 AGFKRLFINLGKADGFYPGEIMQYLNKHVK-GRQEVGHIDLLSKFAYIEVPEEDAKRVMK 533

Query: 524 TVK 526
            + 
Sbjct: 534 ALN 536


>gi|325928505|ref|ZP_08189695.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
 gi|325541118|gb|EGD12670.1| ATP-dependent RNA helicase CsdA [Xanthomonas perforans 91-118]
          Length = 537

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 148/536 (27%), Positives = 248/536 (46%), Gaps = 53/536 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     + +A++  GY + + +Q A +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 10  LFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERR 119
                  +      P AL +APTRELA+QV    +    A  G  V    GG    ++  
Sbjct: 70  NADLHQVK------PQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S LK +VLDEADEML +GF DD+E +L   P++
Sbjct: 124 ALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEQ 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ +FSAT+ PAI  +A+ Y KD   V IA++    ++I  R   V+   + +A+  IL
Sbjct: 184 RQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+A+     + L        A++G++ Q  R   +  ++DG+  + +
Sbjct: 244 EVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +     +
Sbjct: 304 ATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRSI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE----- 414
            R     +     PSV+A+ +    R +      +++ G +  M   LL +++ E     
Sbjct: 364 ERATRQPIEEMQLPSVDAVNDTRVARFM--SRITETLAGGQIDMYRDLLQRYEAENNVPA 421

Query: 415 -KIAAGFLRIHRAGLC---------APEEITPVSLVSGRDRFRDDS-------------- 450
             IAA   ++ +             A E+  P       DR                   
Sbjct: 422 IDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADGE 481

Query: 451 -------------RAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSG 493
                        R  +      +   G   + + VG     +   ++  +   +G
Sbjct: 482 RAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAG 537


>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 594

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 161/546 (29%), Positives = 270/546 (49%), Gaps = 33/546 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + I  A++E+GY   T +Q   +   L   D+L  +QTG+GKT AFGL + 
Sbjct: 17  MTFKELELEEEIVRAVTEKGYEEPTDIQSQAIPILLGNHDLLAQSQTGTGKTAAFGLPML 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           S     + + + +     L + PTREL +QV  E+        GV +A   GG  + ++ 
Sbjct: 77  SLTQPGDKKRTNS-----LILCPTRELCMQVAEEMRSFSKYKQGVNIACVYGGSPIDKQI 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ GA IVV TPGRL DHIR K + +   + +VLDEADEML++GF +DIE I    P+
Sbjct: 132 RDLKRGADIVVATPGRLMDHIRRKTIRLDDCRHIVLDEADEMLNMGFIEDIEEIFSFLPE 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+   FSAT+   I  L++ +  +  R+ ++  N   S I      V   D+ +  + +
Sbjct: 192 ERQFAFFSATMPKEIVKLSEKFLVEPERITLSRNNLTVSRIKQIYYTVESRDKVDLTIQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H     ++FC+T+  V   T  L +  F  + L G++ Q+ RS  +   + G   V 
Sbjct: 252 LQLHKTSGTMIFCNTKKMVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+  +++VI+ ++    E  +HR GRTGRAG++G+++ ++ +  +   ++
Sbjct: 312 IATDVAARGIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVSRRQRYAIKQ 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R +N ++V  P P+ E + +          L +D +  + +K  D    K        
Sbjct: 372 IERLSNSTIVETPLPTKEQLND----------LMVDQLAREIRKWNDHEQGK-------- 413

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFSLSVGS 475
               I   GL          +V+  ++   +S    +    + + K     S   LSVG 
Sbjct: 414 -LFNIAYEGLRNENFTQEEIIVAFINKMISESNLEAIKVSKQKDVKNKGEISRIGLSVGD 472

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTVKLDKGI 531
           +    A  L+  +  +SGI  + IG I++  + + VEV      D ++ L  T    K +
Sbjct: 473 RDGIAAAHLVSAIATASGIRGKDIGRIKIDDNESTVEVPREFAQDIINKLSDTKINSKDV 532

Query: 532 QLKYLG 537
            +  + 
Sbjct: 533 TVTMVD 538


>gi|317474632|ref|ZP_07933906.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909313|gb|EFV30993.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 644

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 274/587 (46%), Gaps = 33/587 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I  A+ E GY     VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGVSPEIRRAIEEMGYACPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N        P +L + PTREL +Q+  +L        G+ V    GG S+  
Sbjct: 61  LIQQINVNN------RIPQSLILCPTRELCLQIAGDLNDYSKYIDGLRVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +  K +++S ++ VV+DEADEML++GF D I  IL   
Sbjct: 115 QIRALKRGVHIIVATPGRLLDLMERKTVSLSTIQNVVMDEADEMLNMGFTDSINAILADV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R  L+FSAT+SP IT ++K Y  +A  + I  +N   S++ +    V   D+  A+ 
Sbjct: 175 PQERNTLLFSATMSPEITRISKKYLHNAKEITIGRKNESTSNVKHVVFTVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFRIRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKM 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R      +    P+ + I E+   +++ +   L+ ++ +E ++ D +      L  
Sbjct: 355 REIERIIGKKFIQGEMPTGKQICEKQLLKVIDE---LEKVKVNEDEICDFMPDIYRKLDW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              E +    +                  ++       +++  +  G +R    G     
Sbjct: 412 LSKEDLIKRMVSHEFNRFLDYYRNREEIEIAT--GSERNAKGSERSGSTRQAAPGFKRLF 469

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL--- 527
           +++G         L+ +L  ++   R  +G I +    +F EV    V  + + +     
Sbjct: 470 INLGKMDNFFPNELISLLNSNTR-GRIELGRIDLMQKFSFFEVEEKEVGNVVKALNRANW 528

Query: 528 -DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + + ++  G E  D         K K   +G +   K F G  ++
Sbjct: 529 NGRKVSVEIAGEEGKDT-------PKGKRRSEGGSYGKKEFDGKKRS 568


>gi|325953815|ref|YP_004237475.1| DEAD/DEAH box helicase [Weeksella virosa DSM 16922]
 gi|323436433|gb|ADX66897.1| DEAD/DEAH box helicase domain protein [Weeksella virosa DSM 16922]
          Length = 586

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 162/580 (27%), Positives = 286/580 (49%), Gaps = 22/580 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALA 59
            F+++     I  A+ + G+V+ + +QE  +   L  ++DV+  AQTG+GKT AFGL + 
Sbjct: 2   TFKDLGLQPEILSAVEDMGFVSPSPIQEKAIPQILSSDQDVIALAQTGTGKTAAFGLPIL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           + L              A+ + PTREL +Q+ +E+E   A   GV +    GG  + ++ 
Sbjct: 62  NQLDLSQKNV------QAIILCPTRELCLQIAKEMESFAAHMQGVKIQAVYGGADIVKQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++   IVVGTPGR  D I+   L I+++   VLDEADEML++GFRD+I+ IL+++P+
Sbjct: 116 KGLRDNPQIVVGTPGRTMDLIKRNALKINNITWTVLDEADEMLNMGFRDEIDNILETTPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   +  +A  Y    V + ++  N    +I+++  +V  SDR  A+  I
Sbjct: 176 EKQTLLFSATMPREVRRIAAEYMFKPVEIAVSKVNMASKNIEHQYYMVRASDRYLALKRI 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y+ +   IVFC TR         L +  +   AL G+LSQ +R   +   R    ++ 
Sbjct: 236 ADYYPSIYGIVFCKTRRETKEVADRLMQDGYNADALHGDLSQAQRDFVMDKFRKKNIQIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ +L  VI+  L  +PE  +HRSGRTGRAG KG+S+ +      R+ + 
Sbjct: 296 VATDVAARGIDVNELTHVINYSLPDDPEVYVHRSGRTGRAGNKGISIIIAHSREGRKVKD 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---HDPEK 415
           + +  +  +  +  PS E I ER    +++     +      +  +D +  K    D ++
Sbjct: 356 VEKFISAPIELKKVPSGEEICERRMFNLIEKIENTEVDDIQIEPYMDAVYEKLQGLDRDE 415

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +   F+           +       + +D    +S   +     R + K  + F +++G 
Sbjct: 416 LIKRFVSAEFNTYLEYYK-------NSKDLNESESSRGEGRERGRRSNKNFTRFYINLGE 468

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQL 533
           K + +A  L+ M+   +      IG I +  + +F EV  +    +  +   K   GI++
Sbjct: 469 KHRVKAPNLIGMINEFTRNRNIEIGKIEILRNFSFFEVEDEFTQTILDSFNGKDRDGIEI 528

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                +    R Y ++    ++ +    +  +R     KN
Sbjct: 529 DVQISKPEPNRLYDNNRSGRRDRKRSDFRGARRGNDRKKN 568


>gi|330998021|ref|ZP_08321852.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569322|gb|EGG51102.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 664

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 159/559 (28%), Positives = 262/559 (46%), Gaps = 21/559 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L    DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSAEIRQAIEEMGYEHPMPVQEEVIPYLLGVNNDVVALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +       +  +   AL ++PTREL +Q+  +LE        V  +   GG ++  
Sbjct: 61  VLQKVD------ASRNETQALILSPTRELCLQIADDLENYSKYLPGVRVLPVYGGANIEP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G  ++V TPGRL D +  K  ++ H++ VVLDEADEML +GF + I+ IL   
Sbjct: 115 QIRTLRKGVQVIVATPGRLIDLMERKAASLEHVENVVLDEADEMLSMGFTESIDKILAGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+    L+FSAT+S  I  ++K Y +DA  + + S N     +++   +V   D+  A+ 
Sbjct: 175 PENHNTLLFSATMSREIERISKKYLRDAKEIVVGSRNEGAETVNHVYYMVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC TR         L +  +   +L G+LSQQ+R   +Q  R  R +
Sbjct: 235 RIVDYYPKIYAIIFCRTRLETQEVADKLIQDGYNADSLHGDLSQQQRDLTMQKFRQHRVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ ++    + + 
Sbjct: 295 FLVATDVAARGLDVEDLTHVINYGMPDDIENYTHRSGRTGRAGKKGTSICIVHTRERSKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
             + +      V    PS + I  +   +++ D   ++  + + ++    V   L   D 
Sbjct: 355 REIEKVIGKEFVKGEMPSGKEICAKQLYKVIDDIERVEVDEEEIEQFLPEVYRKLEWLDK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    +              P          R +    K   G R   +G +   L+V
Sbjct: 415 EDLIKRVVSREFGRFLQYYANAP---EISEPTGRGEKGGKKGQRGGRKPEEGYTRLFLNV 471

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDK 529
           G      A+ +M ++       +  +G I +    +F EV     D +   +       +
Sbjct: 472 GKVDGFYAKEVMKLVNDHVQ-GKVEVGRIDLMKSFSFFEVPDGEADRVLHGLSGVQVKGR 530

Query: 530 GIQLKYLGGEKPDFRGYKS 548
            + ++   GE  +    KS
Sbjct: 531 KVNVEVATGEAHEAGDGKS 549


>gi|157413572|ref|YP_001484438.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388147|gb|ABV50852.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 593

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 256/545 (46%), Gaps = 27/545 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 58  FNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTNNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVG-RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV      +    +        GG     +   L+   
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     I H+  +VLDEADEML++GF +DIE+I+D  P+ ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 233 SATMPSEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDA-LKRILELNNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L      
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRT 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM--------VDVLLAKHDPEK-- 415
            +     PS + I E+  ++++ D +   S+  DE +         +D L  K+  +   
Sbjct: 412 KIEEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKALIIDVLDNLKEKYSMDDSN 470

Query: 416 --IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWF 469
             +AA  L I        ++ + ++  +  DR R +  +      S             +
Sbjct: 471 IAMAAINLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNSNNRMRNSNRRNNYQNDSFETY 530

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             + G         ++  +C S+ IN +SIG I++  D + V++     DL R T    K
Sbjct: 531 KFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRETKNKLK 587

Query: 530 GIQLK 534
            I+++
Sbjct: 588 KIKVR 592


>gi|282880561|ref|ZP_06289268.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305664|gb|EFA97717.1| putative ATP-dependent RNA helicase DeaD [Prevotella timonensis
           CRIS 5C-B1]
          Length = 627

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 158/545 (28%), Positives = 262/545 (48%), Gaps = 30/545 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+V+   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHR 116
           L   +         +    A+ ++PTREL +Q+  +L+        +      GG S+  
Sbjct: 61  LLQKIDVA------SKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVT 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++GA I+V TPGRL D +      + H+  VVLDEADEML++GF + I  IL   
Sbjct: 115 QIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  I  +AK Y +D   + + S N    ++++   +V   D+  A+ 
Sbjct: 175 PDDRNTLLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ +L  VI+  +  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 LLVATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK------MVDVLLAK 410
             + +      V    P+ + I  +   + + D   ++ I  DE++       ++     
Sbjct: 355 RAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMVEINRHFEY 411

Query: 411 HDPEKIAAGFLRIHRAGL-----CAPEEITPVSLVSGRD-----RFRDDSRAFKVGGGSR 460
            D + I    + +           APE   P      R      R    +R+ + GG SR
Sbjct: 412 VDKDDIIKKIVSLTFGRFLAYYANAPEIEKPSLKRDDRGEEKGMRGGRKARSERGGGRSR 471

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
              +G     +++G         +M  + +     RQ +G I +   ++++EV     + 
Sbjct: 472 TPERGYRRLFINLGKDDGFYPGEVMQFINQHVK-GRQQVGHIDLLGKISYIEVPEKDANK 530

Query: 521 LRRTV 525
           + R++
Sbjct: 531 VMRSL 535


>gi|282879073|ref|ZP_06287833.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281298807|gb|EFA91216.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 644

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 161/545 (29%), Positives = 264/545 (48%), Gaps = 30/545 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +K FE +   + I  A+ E G+V+   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 18  LKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDVIALAQTGTGKTAAYGLP 77

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHR 116
           L   +  +      +    A+ ++PTREL +Q+  +L+        +      GG S+  
Sbjct: 78  LLQKIDVD------SKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHVEPVYGGASIVT 131

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++GA I+V TPGRL D +      + H+  VVLDEADEML++GF + I  IL   
Sbjct: 132 QIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGFSESINTILAGV 191

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R  L+FSAT+S  I  +AK Y +D   + + S N    ++++   +V   D+  A+ 
Sbjct: 192 PDDRNTLLFSATMSNEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYMVNARDKYLALK 251

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+    AI+FC T+         L +  +   AL G+LSQQ+R   +Q  R    +
Sbjct: 252 RIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDLTMQKFRQHVTQ 311

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  +  + EN  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 312 LLVATDVAARGLDVDDLTHVINYGMPDDTENYTHRSGRTGRAGKKGTSICIIHTRERSKV 371

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK------MVDVLLAK 410
             + +      V    P+ + I  +   + + D   ++ I  DE++       ++     
Sbjct: 372 RAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHD---IEKIDVDEEQIAPFMVEINRHFEY 428

Query: 411 HDPEKI-----AAGFLRIHRAGLCAPEEITPVSLVSGRD-----RFRDDSRAFKVGGGSR 460
            D + I     +  F R       APE   P      R      R    +R+ + GG SR
Sbjct: 429 VDKDDIIKKIVSLTFGRFLDYYANAPEIEKPSLKRGDRGEEKGMRGGRKARSERGGGRSR 488

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
              KG     +++G         +M  + +     RQ +G I +   ++++EV     + 
Sbjct: 489 TPEKGYRRLFINLGKDDGFYPGEVMQFINQHVK-GRQQVGHIDLLGKISYIEVPEKDANK 547

Query: 521 LRRTV 525
           + R++
Sbjct: 548 VMRSL 552


>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 589

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 258/589 (43%), Gaps = 57/589 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +  
Sbjct: 8   FSTF-NFSNALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  E       S   AL +APTRELA+QV  + E L        +AV  GG    R+ +
Sbjct: 67  NLSPE------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K
Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++M +FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +
Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++  +     R    +
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI- 416
            R     +     P+   I+    QR + +     + +     K++V+  + +HD   + 
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 417 -----------------------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
                                  AA   +  RA                R     D +  
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 454 KVGGGSRDNFKGSSW-------------------FSLSVGSKQKAEARWLMPMLCRSSGI 494
           +           +                     F + VG     +   ++  +   +G+
Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540

Query: 495 NRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE 539
             + I  +++  D + V +      + +  L +     + + L  +G  
Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589


>gi|301311699|ref|ZP_07217624.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|300830259|gb|EFK60904.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 606

 Score =  266 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 161/606 (26%), Positives = 271/606 (44%), Gaps = 47/606 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +            P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKINVSQ------YQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL + 
Sbjct: 115 QIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A+ 
Sbjct: 175 PENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +     + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  N        P+ E I E+    ++     ++ ++ +E+++  ++      L  
Sbjct: 355 REIERIINKKFDKGEMPTGEQICEKQLFNLVDQ---IEKVKVNEEEIASLMPSIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D E I    + +    +    +      V       +  R     GG  +  +G + F 
Sbjct: 412 LDKEDIIKRVVSLEFNRMIDYYKDNDDIEVVD----ENAPRERGKRGGRGEAEEGYTRFF 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LD 528
           ++ G   +     L+ ++       +  IG I ++ + +F EV     + +  ++     
Sbjct: 468 INFGKTDELTPPQLIELV-NKCVPGKVRIGRIDLRDNFSFFEVEEGEANRVMDSMNGFEV 526

Query: 529 KGIQLKYLGGEKP---------------------DFRGYKSSGFKSKNSQDGATKRFKRF 567
            G ++     +                       D R     G  S+   D   +R  R 
Sbjct: 527 DGRRISVEPAQAKGEGGKGSRGSRGGSRSGNGFRDRRDSGRGGRDSRRESDRGGRRSSRS 586

Query: 568 KGASKN 573
               K 
Sbjct: 587 DDKPKR 592


>gi|149196871|ref|ZP_01873924.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139981|gb|EDM28381.1| Probable ATP dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 537

 Score =  266 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 142/541 (26%), Positives = 251/541 (46%), Gaps = 21/541 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M  F    +   I + L  +G+   + +QE  +   L ++ D++  AQTG+GKT AFGL 
Sbjct: 1   MDKFTALGLEPWITQCLEAKGFKEPSPIQEQAIPVLLSQDHDIIGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +     +      P AL + PTRELA+QV  E++      G+      GG  +  +
Sbjct: 61  IVQKIEPGLKK------PQALILCPTRELAIQVNEEIKSFCKGRGITTVTLYGGAPIMDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G  +VV TPGR    I    L +  L+ +VLDEADEML++GF +D+E +L +SP
Sbjct: 115 KRALKKGVDLVVATPGRCIHFIEDGKLELDSLEYLVLDEADEMLNMGFVEDVEKVLKASP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R +LMFSAT+ P +  +A++Y  +++ +   SE      ID         ++  A+  
Sbjct: 175 DDRTVLMFSATMPPRLKKIAESYMHNSITIKAKSETMTMETIDQVVYEAYPENKFAALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+  V + +  LA   +    + G+++Q+ R   L+  R+    +
Sbjct: 235 IMDLEKDFYGIIFCRTKVEVEKVSAGLANEGYAADYIHGDVAQESRERLLKRFRNRNISL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ DL  +++  L    E+ +HR GRTGRAG+ G ++ +I    + +  
Sbjct: 295 LIATDVAARGIDVTDLSHIVNFSLPEQFESYVHRIGRTGRAGKTGTAITLITPKERSKMS 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKH 411
            + ++          P  E + +   Q++ ++         +       K++   LL  +
Sbjct: 355 FIEKKTGAKTERRKLPFGEEMIKLRIQKLSKELAHFQENNAELEELAPIKEVAAQLLEDN 414

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            P  I    L               ++  + + + RD SR FK    S D+         
Sbjct: 415 SPVDIITALLSKIFGTKLDASNYPDINCSAAKKKSRD-SRNFKGNTASGDSKS----LFF 469

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
           + G +     + ++  +   S +  + I  ++V    +    +A+  + + R+    KG+
Sbjct: 470 AKGKRDGMMPKKVISFISGKSKVAPRGIDNLKVFDKFSLFTTNANDAERIIRSCNR-KGM 528

Query: 532 Q 532
            
Sbjct: 529 S 529


>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
 gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
          Length = 589

 Score =  266 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 258/589 (43%), Gaps = 57/589 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F N    + +AL +  ++  + +Q   +   L  +D +  AQTG+GKT AF L +  
Sbjct: 8   FSTF-NFSSALNKALEDMKFITPSPIQAQTIPLILEGRDAIALAQTGTGKTAAFALPILQ 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  E       S   AL +APTRELA+QV  + E L        +AV  GG    R+ +
Sbjct: 67  NLSPE------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K
Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++M +FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +
Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++  +     R    +
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI- 416
            R     +     P+   I+    QR + +     + +     K++V+  + +HD   + 
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 417 -----------------------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
                                  AA   +  RA +              R     D +  
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARVGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 454 KVGGGSRDNFKGSSW-------------------FSLSVGSKQKAEARWLMPMLCRSSGI 494
           +           +                     F + VG     +   ++  +   +G+
Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540

Query: 495 NRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE 539
             + I  +++  D + V +      + +  L +     + + L  +G  
Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589


>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
          Length = 589

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 257/589 (43%), Gaps = 57/589 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +  
Sbjct: 8   FSTF-NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  E       S   AL +APTRELA+QV  + E L        +AV  GG    R+ +
Sbjct: 67  NLSPE------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K
Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++M +FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +
Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++  +     R    +
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI- 416
            R     +     P+   I+    QR + +     + +     K++V+  +  HD   + 
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKDHDVSAVD 420

Query: 417 -----------------------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
                                  AA   +  RA                R     D +  
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 454 KVGGGSRDNFKGSSW-------------------FSLSVGSKQKAEARWLMPMLCRSSGI 494
           +           +                     F + VG     +   ++  +   +G+
Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540

Query: 495 NRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE 539
             + I  +++  D + V +      + +  L +     + + L  +G  
Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589


>gi|182418672|ref|ZP_02949948.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237669697|ref|ZP_04529674.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377449|gb|EDT75004.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237654771|gb|EEP52334.1| cold-shock deAd box protein a [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 524

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 255/543 (46%), Gaps = 39/543 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+S+ G+   + +QE  +   L   D++  AQTG+GKT A+ L +        
Sbjct: 11  LKESIVRAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPIL------- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S      AL +APTRELAVQV  E+  L       +    GG S+ R+ R L+ G  
Sbjct: 64  TKMSTNKGIKALILAPTRELAVQVKDEMNRLSKYEKAEILAVYGGDSIDRQIRALRKGVD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+ K L++  ++ +VLDEADEML++GF DDIE IL  +P++R+ L+FS
Sbjct: 124 VVVGTPGRMLDLIKRKCLHLDSVEFLVLDEADEMLNMGFIDDIESILSHTPEERQTLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  LAK Y K   ++    ++    S I+    ++    R  A+  +L      
Sbjct: 184 ATMPDPIAKLAKRYMKPDAKLVSVKKSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC T+  V    + L    + V  + G+++Q  R   L   ++G   + IATDVAA
Sbjct: 244 SAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLSKFKEGTLNLLIATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V + +L  + E+ +HR GRTGRA R+G +  ++        +++ +    
Sbjct: 304 RGIDVDGVTHVFNYDLPQDVESYVHRIGRTGRANREGTAYSLVTPKDFSMLKQIQKVTKS 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK----HDPEKIAAGFL 421
           ++  +P P+ E I+ +    I+++    ++I   +         +    +DP  + A  +
Sbjct: 364 AITQKPVPTAEEIKNKKFNDIIKE--VTETITSGDLAKFMPNAIELVENNDPLSVVAALM 421

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +I        +  +       ++  R                        SVG +     
Sbjct: 422 KIKYDNESVFDYSSDKLEAPKKEDIR---------------------LFFSVGKRDGLTP 460

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKYLG 537
           + L+  +   + +N  +IG I +  + +FV     VS   +D         K + ++   
Sbjct: 461 KVLINYIKDRTRVNASTIGQIDLMENFSFVSVDETVSKKILDKCPGGKINKKKVNVEVAN 520

Query: 538 GEK 540
             K
Sbjct: 521 RRK 523


>gi|257466549|ref|ZP_05630860.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917704|ref|ZP_07913944.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691579|gb|EFS28414.1| ATP-dependent RNA helicase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 528

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 148/531 (27%), Positives = 252/531 (47%), Gaps = 31/531 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + +ALS++GY   T +Q   +   L   KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +            + + PTRELA+QV  E+  L +   + +    GG S+  +
Sbjct: 67  ILENIEHQ-------DKIQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ L+NGA I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ 
Sbjct: 120 RKLLRNGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AK + KD   + + +        D     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPNEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    +I +  D +  +      KK+   LL K + E 
Sbjct: 360 QIQKIVKTEIRKEEVPEVKDVIQAKKFQIQKDIDEILGEGEYDKFKKLAQDLLKKEEAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I A  L++    +        +S                          G +   +++G 
Sbjct: 420 IVASLLKLAYEDVLDESNYNEISSTKS-------------------VGGGKARLFVALGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K    A+ L+  + + + +  + I  + V    +F+ V     +++  + K
Sbjct: 461 KDGMTAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITVPFKEAEIIIDSFK 511


>gi|301064349|ref|ZP_07204778.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
 gi|300441525|gb|EFK05861.1| DbpA RNA binding domain protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 156/588 (26%), Positives = 269/588 (45%), Gaps = 24/588 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALAS 60
           FE   +   + +A+ + GY   T +Q+  +   L  + D++  AQTG+GKT A+GL L  
Sbjct: 3   FETLGLKARLIKAVQDLGYKEPTPIQKKAIPALLENRQDLVGLAQTGTGKTAAYGLPLLQ 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +     R         L + PTREL  Q+ ++L           +    GG  +  + R
Sbjct: 63  LIDFSTSRV------QGLILCPTRELCFQISKDLARYSRYVEHAKIVAVYGGAGMEPQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ GA I+  TPGRL D I+   +N+  +  VVLDEADEML +GF++D++ IL  +P +
Sbjct: 117 QIKKGAQIITATPGRLLDLIKRGIVNLHDIDYVVLDEADEMLTMGFQEDLDEILAQTPPE 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R  +FSAT++  +  +++NY KD + + +  +N   S+I +   +V   +R  A+  I+
Sbjct: 177 KRSWLFSATMTAPVARISQNYLKDPLEITVGRKNSGASNISHFKYVVLEKNRYPALKRII 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            YH    ++VFC TR       + L    +   +L G+LSQ +R   +   R+   ++ +
Sbjct: 237 DYHPDIFSLVFCRTRKETQAVAEKLIRDGYNAESLHGDLSQTQRDYVMGRFRERSLQILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  VIH  L   P    HRSGRT RAG+ G S+ ++     R+   +
Sbjct: 297 ATDVAARGLDVDDISHVIHYNLPDEPGAYTHRSGRTARAGKSGASIVLMNTRENRKLAHV 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEKI 416
            +   V    E  PS  A+ E+   R+++  + +D    +       V   LA    E++
Sbjct: 357 EQVTGVRFRHEKVPSGRAVCEKQLYRMVEKLVDVDVNHEEIDAFLPPVYETLAGLTKEQL 416

Query: 417 AAGFLRIHRAGLCAP----EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
              F+ I            E+I   +        +      +    S      +    L+
Sbjct: 417 IQHFVSIEFNRFLDYYKGSEDINARTPQKRGSTEKRTPAEKRTSKYSPKEPTETQKLFLN 476

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LD 528
           +G     +   +  ++C  SGI    IG I V  + +F+EV     D + +++K      
Sbjct: 477 MGRLDNIQKGAITRLVCDKSGIRSNQIGKIEVMREFSFLEVDTAWTDHVMKSMKGASLDG 536

Query: 529 KGIQL---KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           K + +   +    +       + +G K        +KR +R   + K 
Sbjct: 537 KRVSMGYAEKKKEKSSSSHKNRGTGKKWTAQGGKTSKRGRRSPLSRKR 584


>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
 gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
          Length = 589

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 146/589 (24%), Positives = 257/589 (43%), Gaps = 57/589 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +  
Sbjct: 8   FSTF-NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  E       S   AL +APTRELA+QV  + E L        +AV  GG    R+ +
Sbjct: 67  NLSPE------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K
Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++M +FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +
Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++  +     R    +
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI- 416
            R     +     P+   I+    QR + +     + +     K++V+  +  HD   + 
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKDHDVSAVD 420

Query: 417 -----------------------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
                                  AA   +  RA                R     D +  
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAASAFKEDRARAGEKGLDLRGRFKEDRKNSFADRKGA 480

Query: 454 KVGGGSRDNFKGSSW-------------------FSLSVGSKQKAEARWLMPMLCRSSGI 494
           +           +                     F + VG     +   ++  +   +G+
Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540

Query: 495 NRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE 539
             + I  +++  D + V +      + +  L +     + + L  +G  
Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589


>gi|229495897|ref|ZP_04389623.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317210|gb|EEN83117.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 587

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 161/582 (27%), Positives = 267/582 (45%), Gaps = 20/582 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            F+ +     + +A+S  G+     VQ A++   L +  D++  AQTG+GKT A+GL L 
Sbjct: 2   TFDELKLSAPLLDAVSALGFTEAMPVQAAVIPYLLEDNIDLIALAQTGTGKTAAYGLPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L  + D       P AL ++PTREL +Q+  +LE        V  +   GG S+  + 
Sbjct: 62  EKLRPQRD------FPQALVLSPTRELCLQIASDLESFAKFLPEVHVLAVYGGSSIETQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVV TPGRL D +R + +++  +  VVLDEADEML++GF +D++ IL   P+
Sbjct: 116 RSLKRGVDIVVATPGRLLDLMRRRAISLERIHTVVLDEADEMLNMGFSEDLKAILSEIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R +L+FSAT+S  I T+A +Y  D   + I  +N  +S+I +   LV    R  A+  I
Sbjct: 176 ERNLLLFSATMSREIATIAHSYLHDPKEITIGRKNEANSNIRHIYYLVPARQRYLALKRI 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + +  +   IVFC TR       + L    +   AL G+LSQ++R   +Q    G  ++ 
Sbjct: 236 VDFFPSIYGIVFCRTRVETKEIAEHLIADGYNADALHGDLSQEQRDRVMQRFCSGHLQLL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VIH  L  + EN  HRSGRT RAG+ G+S+ +     + R   
Sbjct: 296 VATDVAARGLDVDNLTHVIHYGLPDDVENYTHRSGRTARAGKTGLSIALCHLREKSRIRS 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-----KMVDVLLAKHDP 413
           + +     +     PS   I  +    +      +DS    E+       V   L+  D 
Sbjct: 356 IEKLIGAKMEVGTLPSGREICSKHLFHLADRLEHVDSSAHAEEIAAILPEVSQKLSWLDR 415

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +++    + +      A              R   + +  +     R   +G +   ++ 
Sbjct: 416 DELLRRLMTLEFERFFAYYSTAEEIEPESLKRETKEEKRERRNSAPRVVEEGMTRLFINF 475

Query: 474 GSKQKAEARWLMPMLCRSSGINRQ-SIGAIRVQPDLTFVEVSADGVDLLRRTVKL--DKG 530
           G   +     L+ ++ R   +  +  IG I +    +F EV +     L   +     +G
Sbjct: 476 GKTDRLFPNKLIELINRC--VPGRVRIGKIDLMQKFSFFEVDSHDAHRLIEELSQYEVEG 533

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            ++     +  D    K    + +       K F++ K   K
Sbjct: 534 RRIIVDYADAADGSDSKRETARGRKDSAPREKHFRKDKAPRK 575


>gi|262274077|ref|ZP_06051889.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
 gi|262221887|gb|EEY73200.1| cold-shock DEAD-box protein A [Grimontia hollisae CIP 101886]
          Length = 618

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 157/605 (25%), Positives = 272/605 (44%), Gaps = 46/605 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL   G+V+ T +Q A +   +   D L  AQTG+GKT AF L L + L   
Sbjct: 12  DLAENILSALDAIGFVSPTPIQAASIPLLMTGVDALGKAQTGTGKTAAFSLPLLNKLDLG 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
             +      P A+ +APTRELA+QV  E++ L     G+ V    GG S+  + R L+ G
Sbjct: 72  QRK------PQAIVMAPTRELAIQVAAEMKALGQKIDGLKVLEIYGGASIVDQMRALRAG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ D I  + L +  +   VLDEADEML +GF DD+ +I++ +P+  + ++
Sbjct: 126 AHIVVGTPGRVKDLINRERLQLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPESAQRVL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  +   + ++  R+++A  NR    ++ +  +V   ++D A+  +L     
Sbjct: 186 FSATMPPMVKEIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLLETEET 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L+   F+  AL G++ Q  R   ++ ++ G   + +ATDV 
Sbjct: 246 DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILVATDVV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  N  R    + R  +
Sbjct: 306 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRAGKAILLVRTNQIRMLRTIERVTS 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAA 418
             +     P  + + E    R+  D    +  + +  +    L+ K       D   +AA
Sbjct: 366 TRMEEIQLPLRDKVAEARLARLAAD--LHEQKESESLEAFVGLIEKLQEQIDVDTATLAA 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD---------NFKGSSWF 469
             L+  +             + +     R                       N      +
Sbjct: 424 MLLQRQQGKRPLFYNGPDPLIAAMERESRRRDSRRDDRAPRERSERGERRSYNAADWDTY 483

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTV 525
            L VG  Q  + + ++  +    G+ +Q IG+I++    T+V++      + +  LR+  
Sbjct: 484 QLQVGRDQGVQVKDIVGAIANELGLEKQFIGSIKLATGHTYVQLPKKMPKEILGQLRQLR 543

Query: 526 KLDKGIQLKYLGGEKP-----------------DFRGYKSSGFKSKNSQDGATKRFKRFK 568
              K    + + G                      R +   G +  N  D   +RF R +
Sbjct: 544 IRQKATDAQLVEGHVDMAPPRRRNGGDRNGGDRGPRRFDDRGPRGGNRSDKG-RRFDRDR 602

Query: 569 GASKN 573
              + 
Sbjct: 603 SGDRR 607


>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
 gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 589

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 152/589 (25%), Positives = 268/589 (45%), Gaps = 57/589 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F N    + +AL +  ++  + +Q   +   L+ +D +  AQTG+GKT AF L +  
Sbjct: 8   FSTF-NFSSALNKALEDMKFITPSPIQAQTIPLILQGRDAIALAQTGTGKTAAFALPILQ 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  E       S   AL +APTRELA+QV  + E L        +AV  GG    R+ +
Sbjct: 67  NLSPE------ISTTQALILAPTRELAIQVAEQFELLSKYQRNVTIAVLCGGQEYGRQLK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGR+ DHI    L +++LK  +LDEADEML +GF +D+E IL+  P+K
Sbjct: 121 QLRSGAQVVVGTPGRILDHIDKGTLLLNNLKTFILDEADEMLRMGFIEDVETILEKLPEK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++M +FSAT+   I  +A  Y  D   + I  E      I+ R +  ++  + +A++ +L
Sbjct: 181 KQMALFSATMPYRIRQIANTYLNDPASIEIRMETATVKSIEQRFLFASVHQKPDALIRVL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T++S     ++L +H  + +A+ G+++Q  R   +   + G   + +
Sbjct: 241 EVEDYQGVIVFVRTKSSTEEVAELLQQHGLRAMAIHGDITQSLRERIIAQFKQGAIDILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ ++  + E  +HR GRTGRAGR G+++  +     R    +
Sbjct: 301 ATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTGRAGRSGVTILFVTPKESRLISSI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIA 417
            R     +     P+   I+    QR + +     + +     K++V+  + +HD   + 
Sbjct: 361 ERHTRQRIEKVQVPNDHMIQMARQQRFMSNITTRLNHEHVYSYKRIVEEYIKEHDVSAVD 420

Query: 418 A---------------GFLRIHRAGLCAPEEITPVSLV--SGRDRFRDDSRA----FKVG 456
                             L + +A     EE           R RF++D ++     K  
Sbjct: 421 VAAALALLLHKDMPWRKELNMPKAVSAFKEERARAGEKGLDLRGRFKEDRKSSFADRKGA 480

Query: 457 GGSRDNFK----------------------GSSWFSLSVGSKQKAEARWLMPMLCRSSGI 494
            GS+ +F                           F + VG     +   ++  +   +G+
Sbjct: 481 RGSKKDFAKDFSNERKKFNDGRKAVNQESVAQDLFRIDVGKIHGVKPGNIVGAIANEAGL 540

Query: 495 NRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQLKYLGGE 539
             + I  +++  D + V +      + +  L +     + + L  +G  
Sbjct: 541 QSRYITGLKIHEDHSTVRLPKGMPKEVMKDLTKAWVCGRQLNLTLIGSA 589


>gi|325280019|ref|YP_004252561.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311828|gb|ADY32381.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 594

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 160/588 (27%), Positives = 274/588 (46%), Gaps = 22/588 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M+ F+ +     I + + + G+   + VQE ++   L  E D++  AQTG+GKT AFGL 
Sbjct: 1   MEKFKELGLEGEILKGIEDLGFEVPSPVQEKVIPVILGEENDLVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   L       +  +A   L ++PTREL +Q+G++L+      + + VA   GG  + +
Sbjct: 61  LLQKLD------TSLNAIQVLILSPTRELCMQIGKDLQNYAKYRSDIRVACVYGGADIRK 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L  G H++V TPGRLCD I+ + + I  ++AVVLDEADEML++GF++D+ FILD +
Sbjct: 115 QIRELDRGVHVLVATPGRLCDLIKREAVKIEQVRAVVLDEADEMLNMGFKEDLNFILDET 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R   +FSAT+   +  +AKNY ++   ++   +N+    + +    V   D    + 
Sbjct: 175 PAERNTYLFSATMPREVERIAKNYLRNPQEISTGKKNQGADTVTHEYYQVLARDCYETLH 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++       AI+F  T+       + L +      AL G+LSQ +R + +   R  R +
Sbjct: 235 RVIDCAPDMYAIIFTRTKMDAREIARKLQKDGIDCDALHGDLSQAQRDDVMDRFRAKRLK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+  L  + E+  HRSGRTGRAGR+G+SV +I    + + 
Sbjct: 295 VLVATDVAARGLDVDNLTHVINYNLPEDVESYTHRSGRTGRAGREGISVAIINSKEKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL--LAKHDPE 414
            R+         ++  P  E +            L  +  +  +K   ++     +   E
Sbjct: 355 RRIENILKKKFQYKEVPGGEEVCRAQLSYYADKILMTEPKETLDKYRHELFEKFEELSKE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++    +      L           +S  +R     R  + G    +     + FS++VG
Sbjct: 415 ELIQKMMSYEFGKLLKKYASVADLNLSDEERHDGGRREKRRGERKNEESVTFTTFSVNVG 474

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +     R LM ++  ++      IG+IR+  + T  EV   G++      +      L 
Sbjct: 475 KEDGFTPRDLMTIINENAPRKGLEIGSIRIFGNNTKFEVDVRGINGFMSCFRNVSFNGLP 534

Query: 535 YLGGEKPDFRGYKSSGFKSKNS----------QDGATKRFKRFKGASK 572
           +   E  D       G + ++S          +        RF    K
Sbjct: 535 FTLSEVKDRYNRSDRGGERRSSTANNKWRSANRRSDGSSRGRFGEKKK 582


>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 634

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 177/571 (30%), Positives = 271/571 (47%), Gaps = 23/571 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            F ++       + L ++G+   T +Q+  +   L EK DV+  A+TG+GKT AFG+ + 
Sbjct: 6   TFADLGLSARTLDVLKKKGFEEPTQIQKECIPLLLHEKTDVIGQARTGTGKTAAFGIPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+   +      S   AL +APTRELAVQV  E+  +   +G+ +A   GG S+  + R
Sbjct: 66  ETVDEHD------STVQALILAPTRELAVQVADEISSMRPSSGLSIAAIYGGASMSLQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  IVVGTPGR+ DH+    LN+ +LK +VLDEADEMLD+GF +DIE IL  +P  
Sbjct: 120 QLHRGVQIVVGTPGRVQDHLDRGTLNLENLKFMVLDEADEMLDMGFIEDIENILSRTPAD 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +RML FSAT+   I  LA+ + KD   V + S++  +   +     V  SD+  A+  ++
Sbjct: 180 KRMLCFSATMPAPIQNLAQRFMKDPKIVRVVSQDMTNLLTNQVCYEVRESDKLEALCRVI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VFC T+      T+ L        AL G+LSQ++R   L   R  +  V +
Sbjct: 240 DVAVDFYGLVFCRTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+PDL  VI+  +  NPE  +HR GRTGRAGR G +V  I      + + +
Sbjct: 300 ATDVAARGIDIPDLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPREYSKLKYI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKIA 417
            R A+  +  E  P++  I E    RI  +   L ++   +  + +   LL  H  E + 
Sbjct: 360 QRIAHTEIHRETVPAISDIMEAKRNRIATETESLLTVAESDQFRPLARHLLESHAAEDVV 419

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A  L  +++  L         S  +GR + R           + D   G     +S G+K
Sbjct: 420 AALLTGLNKNALDESRYTYLSSDATGRRKGR--------FAETVDPESGLVRLFISRGTK 471

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                  L   +  ++  +   +  I +    +F   + D    +     L+       L
Sbjct: 472 DGLNRELLQEYVSNATNGSVSRLSDIDIGTTYSFASATPDDAKAVIDIFALNAPEGEGPL 531

Query: 537 -GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
               KP+     SS  +   S+     R +R
Sbjct: 532 VTKAKPE--PSSSSFHRRTPSRKAYQDRPRR 560


>gi|313202644|ref|YP_004041301.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441960|gb|ADQ78316.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 621

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 148/563 (26%), Positives = 257/563 (45%), Gaps = 16/563 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLAL 58
           M   E N+   I  A+ E GY     VQE  +   L +  D++  AQTG+GKT AFGL +
Sbjct: 1   MTFRELNLKDDILSAIEELGYAQPMPVQEKTIPFMLEQTADLVALAQTGTGKTAAFGLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
            + +       +      AL +APTREL +Q+  +L+       G+ +    GG  +  +
Sbjct: 61  LNMID------AGRKQVQALVLAPTRELCIQIANDLKGYSKNMRGMRIVPVYGGEDIRTQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L     I+V TPGRL D I    + +  +  +VLDEADEML++GF++DIE IL+ +P
Sbjct: 115 LRQLDTAPQIIVATPGRLIDLIERGKIELGAIDFLVLDEADEMLNMGFKEDIETILERTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR ++FSAT+   I  +AK Y K+   + + ++N    ++++   +     R   +  
Sbjct: 175 ETRRTMLFSATMPKEIANIAKRYMKNYEEITVGTKNAGSENVEHIYYVSQARQRYLVLKR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+  +     IVFC TR         L    +   AL G+LSQ +R N +Q  R    ++
Sbjct: 235 IVDLNPDIYGIVFCRTRQETKEVADKLMHDGYNADALHGDLSQAQRDNVMQKFRIRNIQL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ DL  VI+  L  + E   HRSGRTGRA +KG++V +I    + + +
Sbjct: 295 LVATDVAARGLDVSDLTHVINYNLPDDVEVYTHRSGRTGRANKKGIAVSIIHSKERFKIK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + R    + + E  P+   + ++    ++   ++    +         +   L     E
Sbjct: 355 DIERMLRKTFIQEQIPNGLEVCKKQLFYMIDRMENVEVSEEQIETYMPQIMKQLEYLSKE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++   F+ +      +  +      +  R    +                G     ++VG
Sbjct: 415 ELLKRFVSLEFNRFLSYYKNAEDLNLPERSERGERGERNGDRNDRGSKSGGKVRLKMNVG 474

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            ++  + +  + ++   +G    SIG+I V    TF +V +D V+ +      +    + 
Sbjct: 475 EREGIDPKRFLGIINDVTGDKSISIGSIEVTNKFTFFDVFSDQVEKVVMAFAGETDYIVA 534

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQ 557
              G K     ++  G +    +
Sbjct: 535 EAKGSKS----FEGGGSRKPEYR 553


>gi|254526904|ref|ZP_05138956.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538328|gb|EEE40781.1| DbpA RNA binding domain family protein [Prochlorococcus marinus
           str. MIT 9202]
          Length = 593

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 255/545 (46%), Gaps = 27/545 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 58  FNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVG-RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV      +    +        GG     +   L+   
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     I H+  +VLDEADEML++GF +DIE+I+D  P+ ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKIKHINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 233 SATMPSEIKNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDA-LKRILELNNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +   + E   HR GRTGRAGR G ++  + Q  +     L      
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHFLRNLENSTRT 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM--------VDVLLAKHDPEK-- 415
            +     PS + I E+  ++++ D +   S+  DE +         +D L  K+  +   
Sbjct: 412 KIEEINIPSNKIINEKRMEKLI-DNVNESSLAKDENEENKSLIIDVLDNLKEKYSMDDSN 470

Query: 416 --IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWF 469
             +AA  L I        ++ + ++  +  DR R +         S             +
Sbjct: 471 IAMAAINLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSNRRNNYQNDSFETY 530

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             + G         ++  +C S+ IN +SIG I++  D + V++     DL R T    K
Sbjct: 531 KFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRETKNKLK 587

Query: 530 GIQLK 534
            I+++
Sbjct: 588 KIKVR 592


>gi|150020730|ref|YP_001306084.1| DEAD/DEAH box helicase domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149793251|gb|ABR30699.1| DEAD/DEAH box helicase domain protein [Thermosipho melanesiensis
           BI429]
          Length = 514

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 159/527 (30%), Positives = 263/527 (49%), Gaps = 34/527 (6%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALAS 60
           FE  N+ +    A++E+G+   T VQ+ ++   L  EK+++V A+TG+GKT AFG+ L  
Sbjct: 3   FEDFNLSEKTLYAINEKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPLIE 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L ++           A+ + PTRELA+QV  E+  L  +  + +    GG S+ R+   
Sbjct: 63  LLESKG-------YVQAIILTPTRELALQVSEEINSL-KRKRLKILPVYGGQSISRQIEH 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DH+  K +++S ++  +LDEADEMLD+GF DD+E IL S+  ++
Sbjct: 115 LKRGVDIVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEK 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             LMFSATI   I  LAK Y K+   + IA +    +  +   + +  +D+  A+  I+ 
Sbjct: 175 IFLMFSATIPRRIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIID 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VFC T+  V   +  L E  +   AL G+ SQ +R   L+  ++ R  + +A
Sbjct: 235 VEDDFYGMVFCRTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI+  +  NPE+ +HR GRTGRAGR+G+++  +     R+  R+ 
Sbjct: 295 TDVAARGIDISGLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEYRQLFRIK 354

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAAG 419
           + +   +     PSVE I    ++RI  + L  +  +      + D LL K +P ++ A 
Sbjct: 355 KFSKAKIKEGKIPSVEQIIRAKSERIKSELLKEEKKLPNIYYNLADELLKKTNPREVIAK 414

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L +    L  PE+   V      +                          ++ G +   
Sbjct: 415 LLNMSFKSLN-PEKYEKVLPPKENE---------------------VVRLFIAKGKQAGL 452

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             + L+  +   + I+ + I  + V    +F+ V     +++    K
Sbjct: 453 TKKDLVRFIVEKTNISPKVISDVVVLDKFSFITVPYKEAEIILSIFK 499


>gi|317152644|ref|YP_004120692.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942895|gb|ADU61946.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 163/575 (28%), Positives = 261/575 (45%), Gaps = 32/575 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+ +   +    AL  +G+   T +QE  +   L+   D++  AQTG+GKT AFGL 
Sbjct: 1   MTDFKELGLSEETLAALESKGFTCPTPIQERTIPLLLQGAVDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T +    R        AL + PTRELA+QV  E+  L  K  + V    GG ++H +
Sbjct: 61  IIETAVENAKRV------QALVLTPTRELAIQVADEINSLKGKKRIRVLPVYGGQAIHMQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  +VVGTPGR+ DH++   L++  L   VLDEADEM ++GF DD+  IL S+ 
Sbjct: 115 LKALKSGVDVVVGTPGRIMDHLKRGTLHLDELDFFVLDEADEMCNMGFVDDVREILKSAN 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             RR L+FSAT+   +  +AK +  D   + + +E             VA SDR  A+  
Sbjct: 175 TDRRTLLFSATMPHEVMRIAKEFMGDYELITVKAEKNDIPLTKQVFHEVADSDRFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        +VF  TRA   R    L E  +    + G+LSQ  R   L   +     +
Sbjct: 235 VVDAEPDFYGLVFTRTRADADRVASRLTERGYPAEPIHGDLSQARREEILGRFKKRLVTI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PDL  V++  L  +P+  +HR+GRTGRAG++G+++ +I  +  RR  
Sbjct: 295 LVATDVAARGIDVPDLTHVVNFALPQDPQTFVHRTGRTGRAGKEGVAISLIAPSEFRRLM 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + + + + +     P +  +      R++   D +  +        M   LL   +PE 
Sbjct: 355 FITKSSGIDITKAKLPCIHDVIYSKKSRMVDGLDGIIQEEAHTPYLPMARDLLEGREPED 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  L+              ++ V+  +R R D                      S+G 
Sbjct: 415 VVAALLKHAFGDELVESSYREINTVTAANRGRAD-------------------LVCSLGR 455

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
                 +  +  + +++ I   SI  +RVQ + T   V     +L+   V    G  L  
Sbjct: 456 VDGMNPKDFVDFISQAARIKPWSIQHVRVQGERTTFTVPGPEAELVVSRVLSRDGRPLVS 515

Query: 536 LGG--EKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
            G   +KP +R            +    K +K  K
Sbjct: 516 QGDSPKKPPYRRDYPKKGAPGPGKHPFKKPYKPRK 550


>gi|269123479|ref|YP_003306056.1| DEAD/DEAH box helicase domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314805|gb|ACZ01179.1| DEAD/DEAH box helicase domain protein [Streptobacillus moniliformis
           DSM 12112]
          Length = 543

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 153/564 (27%), Positives = 272/564 (48%), Gaps = 30/564 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   + EAL ++ +V+ + +Q  ++   L+E+  ++  AQTG+GKT AF + +   ++ 
Sbjct: 7   NLSNEMLEALEKKRFVSPSEIQALVIPELLKEETHLIGQAQTGTGKTAAFSIPILEKII- 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 P     AL +APTRELA QV  E+  L  K  V +    GG S+  + ++L+ G
Sbjct: 66  ------PTKKVKALILAPTRELANQVSDEIYSLKGKKEVKILAVYGGASIENQIKNLKKG 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ D I    L ++ L+  VLDEADEML++GF +DIE IL+ + + ++ML 
Sbjct: 120 VDIVVGTPGRVIDMINKGALKLNELEYFVLDEADEMLNMGFIEDIELILEKTNEDKKMLF 179

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  +AK +  +   + +  +       +     V   D+  A+  +L Y   
Sbjct: 180 FSATIPKPILAIAKRFMPEHKILKVQKKELTTHLTEQIYFEVRREDKFEALCRVLDYKPD 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T++ V   T  L    +   A+ G+++Q  R  AL + ++    + +ATDVA
Sbjct: 240 FYGIVFCRTKSEVDEVTNKLKARNYDAEAIHGDITQGLREKALDLFKNKILNILVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+  +    ++ +HR GRTGRAG KG+++  +     R+  ++ RE  
Sbjct: 300 ARGIDVSNLTHVINYSIPQESDSYVHRIGRTGRAGNKGIAITFVTPQESRKLAQIKRETK 359

Query: 365 VSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +  E  P+VE I     + ++   + + L++       + + LL   + E   A  LR
Sbjct: 360 SDIKKENIPNVEDIINAKEELLIASVEEIMLENDYKLYLDLANKLLKGKNTEAAVASLLR 419

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                   PE  + +  V                   +   K ++   +++G K      
Sbjct: 420 HIYDDEFIPESYSKIKNV-------------------QVQIKDNTRLFIALGEKDGLNVN 460

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            L+ ++   + +  + I  ++V P+ +F+ V  D  +++ +    +     K +  E  +
Sbjct: 461 KLLKLIHEKTKVPGRKIKDVKVMPNFSFITVPLDEAEIIIKIFNKNTTKNSKPMV-EVAN 519

Query: 543 FRGYKSSGFKSKNSQDGATKRFKR 566
                +   K   ++ G +K+ +R
Sbjct: 520 SDKSGNGSNKKSRTKLGDSKKKRR 543


>gi|71891896|ref|YP_277626.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796002|gb|AAZ40753.1| cold-shock DeaD box ATP-dependent RNA helicase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 569

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 156/554 (28%), Positives = 245/554 (44%), Gaps = 29/554 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   L + GY     +Q   +   L   DVL  A TGSGKT AF L L   +   N
Sbjct: 13  LNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMAHTGSGKTAAFVLPLLHNVDINN 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S    L I PTRELA+Q+GR           +  V   GG S   +   L    
Sbjct: 73  ------SCSQGLIITPTRELAIQIGRVCSNFAKYMKKINVVTLYGGQSYGIQLSALNKRP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL DH+     N+S LK +V+DEADEML +GF +D+E I+ + P KR+  +F
Sbjct: 127 HIIVSTPGRLIDHLNRGTANLSQLKTLVIDEADEMLRMGFLEDVERIIKNIPVKRQTALF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGA 244
           SAT+   I  ++  +  +   V I S     ++I     LV     +  A++  L     
Sbjct: 187 SATLPMGIRRISYRFMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALMRFLETEDF 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+ +    +++L    +   AL+G+++Q  R   L  +R G+  + IATDVA
Sbjct: 247 DAAIVFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDILIATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LVI+ ++  N +  +HR GRTGRAG  G S+  +     R    + R+  
Sbjct: 307 ARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFVEHKEYRLLRHIERKIK 366

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP------EKIAA 418
           + +     P+ E + +    R      +  S + D+  +   LL +  P      E +AA
Sbjct: 367 LKIPEVQYPTSETLFDCRLSRFTNKVEYQLSTENDDLDVYRSLLPQIKPRRDLTTENLAA 426

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK---------GSSWF 469
             L+I +          P+       + R +S             K             +
Sbjct: 427 VLLKIAQGNRPLVFPPDPIIKNKSVSKIRINSNRQNCFRVENRVIKTRLQSKISDNMDAY 486

Query: 470 SLSVGSKQKAEARWLMPMLCRS-SGINRQSIGAIRVQPDLTFVEVSA-----DGVDLLRR 523
            +SVG     + R ++ +L  + + I    IG I++      +E+         +  L  
Sbjct: 487 HISVGRNDGVKIRHIIRVLSNNIANIRYHEIGNIKLFSFHAIIELDKGLSSNKILTQLSH 546

Query: 524 TVKLDKGIQLKYLG 537
              L+K I +K+LG
Sbjct: 547 ARILNKPINMKFLG 560


>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 526

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 155/545 (28%), Positives = 248/545 (45%), Gaps = 35/545 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + G+   + +QE  +   L   D++  AQTG+GKT A+G  + S L   N
Sbjct: 11  LKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSRLNDTN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGA 125
                     AL +APTRELAVQV  EL+ L       V    GG S+ R+ R   ++  
Sbjct: 71  -------GIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRDNI 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I  K L ++ +  +VLDEADEML++GF +DIE I+ ++P +R+ L+F
Sbjct: 124 DIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LAKNY K   +      +    S I+    ++    R  A+  +L     
Sbjct: 184 SATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + L    + V  + G++SQ  R   L+  ++G   + IATDVA
Sbjct: 244 SSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+ +L  + E+ +HR GRTGRA R G +  ++        +++ R   
Sbjct: 304 ARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV----DVLLAKHDPEKIAAGF 420
            ++  +  P+   I  R    I+ +    ++I   +          L   +DP  I A  
Sbjct: 364 STITEKSVPTANEIHSRKFTNIMNE--IKETIDSGDFSTFVPSAIELNEAYDPISIIASL 421

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           ++I      + E  T                            K       SVG K    
Sbjct: 422 MKIKFENESSFEYNTDTLDAPS-------------------ASKNDVRLFFSVGKKDGLT 462

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
            + L+  +   + +   +IG I +  + +FV +  D    +       K I  K +  E 
Sbjct: 463 PKILINYIKDQTRVRASAIGKIDLMDNFSFVTIDEDVSSKVLEKCIGGK-INKKKVNVEV 521

Query: 541 PDFRG 545
            + R 
Sbjct: 522 ANKRK 526


>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 526

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 156/545 (28%), Positives = 248/545 (45%), Gaps = 35/545 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + G+   + +QE  +   L   D++  AQTG+GKT A+G  + S L   N
Sbjct: 11  LKDTVVKAIDDLGFNTPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGCPILSRLNDTN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGA 125
                     AL +APTRELAVQV  EL+ L       V    GG S+ R+ R   ++  
Sbjct: 71  -------GIKALILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKDNI 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I  K L ++ +  +VLDEADEML++GF DDIE I+ ++P +R+ L+F
Sbjct: 124 DIVVGTPGRVLDLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LAKNY K   +      +    S I+    ++    R  A+  +L     
Sbjct: 184 SATMPAPIAKLAKNYMKADAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDLDNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + L    + V  + G++SQ  R   L+  ++G   + IATDVA
Sbjct: 244 SSAIIFCRTKKGVDELVEELQGKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+ +L  + E+ +HR GRTGRA R G +  ++        +++ R   
Sbjct: 304 ARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVSPKELGMLKQIQRVTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV----DVLLAKHDPEKIAAGF 420
            ++  +  P+   I  R    I+ +    ++I   +          L   +DP  I A  
Sbjct: 364 STITEKSVPTANEIHSRKFTNIMNE--IKETIDSGDFSTFVPSAIELNEAYDPISIIASL 421

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           ++I      + E  T                            K       SVG K    
Sbjct: 422 MKIKFENESSFEYNTDTLDAPS-------------------ASKNDVRLFFSVGKKDGLT 462

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
            + L+  +   + +   +IG I +  + +FV +  D    +       K I  K +  E 
Sbjct: 463 PKILINYIKDQTRVRASAIGKIDLMDNFSFVTIDEDVSSKVLEKCIGGK-INKKKVNVEV 521

Query: 541 PDFRG 545
            + R 
Sbjct: 522 ANKRK 526


>gi|257452688|ref|ZP_05617987.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|317059228|ref|ZP_07923713.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
 gi|313684904|gb|EFS21739.1| ATP-dependent RNA helicase [Fusobacterium sp. 3_1_5R]
          Length = 528

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 147/531 (27%), Positives = 252/531 (47%), Gaps = 31/531 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           +K F  +   + + +ALS++GY   T +Q   +   L   KD++  AQTG+GKT AF L 
Sbjct: 7   LKEFRELGIGEKLLKALSKKGYETPTPIQSLTIPALLTGEKDIIGQAQTGTGKTAAFALP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +            + + PTRELA+QV  E+  L +   + +    GG S+  +
Sbjct: 67  ILENIEHQ-------DKIQGIVLTPTRELALQVAEEMNSLGSSKKIKIIPVYGGQSIDIQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ L+NGA I+VGTPGR+ D I  K L +  LK  +LDEADEML++GF +++E IL+++ 
Sbjct: 120 RKLLRNGADIIVGTPGRVIDFIERKFLRLQDLKYFILDEADEMLNMGFLEEVEKILEATN 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + +RML FSAT+   I  +AK + KD   + + +        D     V   D+  A+  
Sbjct: 180 EDKRMLFFSATMPSEILKVAKKHMKDYEILAVKARELTTDLTDQIYFEVNERDKFEALCR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        IVFC T+  V+     L +  +    L G++ Q  R   L+  +  +  +
Sbjct: 240 IIDLAEDFYGIVFCRTKTDVNEVVGRLNDRGYDAEGLHGDIGQNYREVTLKRFKAKKINI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  +    E+ +HR GRTGRAG++G ++  I     RR  
Sbjct: 300 LVATDVAARGIDVNDLSHVINYAIPQEAESYVHRIGRTGRAGKEGTAITFITPQEYRRLL 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ +     +  E  P V+ + +    +I +  D +  +      KK+   LL K + E 
Sbjct: 360 QIQKIVKTEIRKEEVPEVKDVIQAKKFQIQKDIDEILGEGEYDKFKKLAQDLLKKEEAEN 419

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I +  L++    +        +S                          G +   +++G 
Sbjct: 420 IVSSLLKLAYEDVLDESNYNEISSTKS-------------------VGGGKARLFVALGR 460

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K    A+ L+  + + + +  + I  + V    +F+ V     +++  + K
Sbjct: 461 KDGMTAKKLVEKVMKVAKVQDKKIRNVEVYEAFSFITVPFKEAEIIIDSFK 511


>gi|88803270|ref|ZP_01118796.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88780836|gb|EAR12015.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 609

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 152/606 (25%), Positives = 274/606 (45%), Gaps = 52/606 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F  +   + I +AL++ GY   T +QE  +   +  + D+   AQTG+GKT AF L 
Sbjct: 1   MSTFLELGLKEPINKALTDLGYEQPTVIQEKAIPQIISSRSDLKAFAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHR 116
           +   L + +          A+ ++PTRELAVQ+G  ++          V    GG S+  
Sbjct: 61  ILELLDSNSGNV------QAIILSPTRELAVQIGNNIKDFCKYLPDVKVTTVYGGSSMED 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G+ IVVGTPGR  D I+ + L + ++K +VLDEADEML++GF+D+++ +L+++
Sbjct: 115 QIRSLKRGSQIVVGTPGRTVDLIKRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLEAT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  ++ L+FSAT    + ++AKNY    V +    +N+    + +    V    R  A+ 
Sbjct: 175 PDTKQTLLFSATFPKEVESIAKNYMTKPVEITSGQKNQGADSVSHEYYSVTERTRYPALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I   +    AI+FC TR         L +  +   AL G+LSQ +R + +   R    +
Sbjct: 235 RIADLNPDIYAIIFCRTRRETQEVADNLIKDGYSADALHGDLSQGQRDSVMGKFRKKTIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ +L  VI+ +L    EN  HRSGRTGRAG  G+S+ ++    + + 
Sbjct: 295 ILVATDVAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNTGISIVLVNGKEKGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
             + +           PS + I +     ++   + ++  +    D    +   L   D 
Sbjct: 355 RPIEKIIQKKFTEAKVPSGKDICQNQLMSLIDKVVNIEVNETQINDFLPSIYEKLEGLDR 414

Query: 414 EKIAAGFLRIHRAGLCA-PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           E++   F+ +    + A  E    ++ +S +D  R           +R   +  + F ++
Sbjct: 415 EQLIQKFVSLEFNTMLAYYENAKDLNDLSSKDNSR-----------ARTENENMTRFFIN 463

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG-- 530
           +G K       L+ ++   +  ++  IG+I +    +F E+  +  D        ++   
Sbjct: 464 IGRKDNLNPGKLIGLINEQNIGDKVEIGSIDILDTFSFFEIDKNFEDKTLEAFSSNQPDF 523

Query: 531 ----IQLKYLGGEKPD---------------------FRGYKSSGFKSKNSQDGATKRFK 565
               + ++    E+                        R   + G  S+ + D  + R  
Sbjct: 524 DGRSVNIEITKKERASGGGRRGGGGRKPFGGKKEGGFGRRRDTEGSSSRRNSDTGSSRRS 583

Query: 566 RFKGAS 571
             +   
Sbjct: 584 SDRPDR 589


>gi|213963177|ref|ZP_03391435.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
 gi|213954261|gb|EEB65585.1| ATP-dependent rna helicase, dead/deah box family [Capnocytophaga
           sputigena Capno]
          Length = 584

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/586 (24%), Positives = 271/586 (46%), Gaps = 31/586 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M +FE +   + I +A+S+ G+   + +Q+  +   L    D++  AQTG+GKT AFG  
Sbjct: 1   MNLFEQLGLDEPILKAISDMGFEIPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  +      +     L ++PTREL +Q+  EL         V  V   GG S+  
Sbjct: 61  LLQLIDTD------SRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A+ 
Sbjct: 175 PQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++  ++ 
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + +        +  PS   I E     +        ++    D    +   L + + E
Sbjct: 355 KTIEKMIGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELKEVNRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++      +         +      V       ++ R  + GG S         + +++G
Sbjct: 415 ELIKKIFSVEFTRFFNYYKNAENLSV-------ENERESRSGGNS-----DEVRYFINIG 462

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKG 530
            +   + + L   L  +  + R  +  + V+   +F    AD  DL+  T        + 
Sbjct: 463 ERDGYDWKSLKDFLKATLNLGRDDVFKVDVKNSFSFFNTDADLSDLVMDTFNDFQLDGRF 522

Query: 531 IQLKY---LGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           I ++      G     R   +   +   + +G +++  + +   + 
Sbjct: 523 INVELSTKGAGRDRGGRKRGNDDGRKHGNDEGRSRKKGQRESRKQK 568


>gi|114567412|ref|YP_754566.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338347|gb|ABI69195.1| ATP-dependent RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 530

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 253/536 (47%), Gaps = 36/536 (6%)

Query: 3   IFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
            FEN     +   + + + E+G+   T +Q   +   +   D++  AQTG+GKT +FG+ 
Sbjct: 2   SFENFYSMGLKTDLLQMIDEKGFEKPTPIQVKSIPIAMAGLDLMGQAQTGTGKTASFGIP 61

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + + ++             AL + PTRELAVQV  E+  L  +  + V    GG S+  +
Sbjct: 62  ILNRVI-------KGEGLQALVLCPTRELAVQVTEEISSLSRRMRIQVLAIYGGQSIELQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    I+VGTPGRL DH+    +++S LK VVLDEADEMLD+GF  DI+ IL   P
Sbjct: 115 LRSLRRNPEIIVGTPGRLMDHMNRGTISLSPLKYVVLDEADEMLDMGFLPDIQKILSQCP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT+   +  L   + K    + I S  R   +I+     V    +   +  
Sbjct: 175 RERQTFLFSATLPDEVRELGTKFMKQPEIILIESPERTVPEIEQYYYQVNSRRKIETLCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+       +++FC T+ +     +VL    +   AL G++SQ+ER + +   R G  ++
Sbjct: 235 IIDAQQPPISLIFCRTKRNADELARVLTSRGYNADALHGDMSQRERDHVMHGFRQGNTKI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  +  V + ++  + ++ +HR GRTGRAGR G+++ ++     R   
Sbjct: 295 LVATDLAARGLDIELVTHVFNFDIPEDLDSYIHRVGRTGRAGRSGIAITLVEPTQIRLLR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKI 416
            + R     +     P++    E+    +L+      +  GD    + + L+ + DPEK+
Sbjct: 355 MIERHTGKRIERALLPTLAEAVEKRQDLLLERVRQASAEPGDVCLSLAEKLMQQGDPEKM 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A  L++    L   E    ++ +   D                      +   L  G  
Sbjct: 415 LAAALKL----LIDEEPDFEMAELPESDDS-------------------MAHLELPAGRL 451

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           Q    R L+  +   + ++ Q +G I +  + TFVEV  D +  +    +  +  Q
Sbjct: 452 QGIHPRQLLEFIATHTSLSPQRVGDIEINRNSTFVEVPMDYIHEVYEAFEKYRRTQ 507


>gi|32490970|ref|NP_871224.1| hypothetical protein WGLp221 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166176|dbj|BAC24367.1| deaD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 583

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 145/549 (26%), Positives = 258/549 (46%), Gaps = 25/549 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL++ GY   + +QE  +   L+  DVL  AQTGSGKT AF L L + +  + 
Sbjct: 13  LKDFILLALNDLGYKKPSPIQEKCIPFLLKGYDVLGIAQTGSGKTAAFFLPLLNNIDLK- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  + + PTRELA+Q+      L      +  +   GG +   + + L+   
Sbjct: 72  -----LKLPQIIILTPTRELALQIKFACCSLSKYIKEINIIALYGGQNYSIQIKSLKRNP 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  K LN+S + + VLDEADEML +GF +D+E I   S K+ + ++F
Sbjct: 127 QIVVGTPGRILDLLNKKYLNLSEITSFVLDEADEMLRMGFIEDVENIFLKSSKQHQTILF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + K + K    + I +      +I     +V    +  A++  L      
Sbjct: 187 SATMPAAIHRITKRFMKKPKEIRIKASENTRPNIKQNYWIVYGLCKIEALLRFLEVEIFD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +    + VL ++ +   +L+G+++Q  R   L   + G   + +ATDVAA
Sbjct: 247 AVIIFVRTKNATLEVSDVLEKNGYNSSSLNGDMNQILREKTLNRFKTGLLDILVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ ++  + E+ +HR GRTGRAGR G ++  +    ++    + R    
Sbjct: 307 RGLDVDRISLVINYDIPLDVESYIHRIGRTGRAGRTGKALMFVENRERKILYNIERNIKE 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-------DPEKIAA 418
            +     PSVE + ++      +     + I   +      LL+K        D + I+A
Sbjct: 367 KLSQIKLPSVELLCKKRLNNFSEK--IKNQINSLDLNKYQNLLSKIISFIGISDVKIISA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFR---DDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             L++ +     P  I+P +  +   +     + +   K     ++  K  S +   +G 
Sbjct: 425 ALLKVAQK--NKPLIISPDNFFNKNKKINLLINKNNKRKKLNIIKNKKKSISLYKAEIGK 482

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE----VSADGVDLLRRTVKLDKGI 531
           K   E++ ++  +     I    IG+I++  + + +E    +  + + +L ++    K +
Sbjct: 483 KDGIESKHIVRTMINLGKIKSNDIGSIKIFFNYSTIEIYKKIPLNLLSILSKSTIFKKSL 542

Query: 532 QLKYLGGEK 540
            LK L   K
Sbjct: 543 NLKLLNHNK 551


>gi|325970751|ref|YP_004246942.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025989|gb|ADY12748.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 622

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 164/579 (28%), Positives = 266/579 (45%), Gaps = 25/579 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           +  F ++        A+  +G+   T +Q A +   L+++ DV+  AQTG+GKT AFGL 
Sbjct: 4   LTSFADLGLSAQTIAAIKAKGFEEPTKIQSACIPLLLKDQVDVIGQAQTGTGKTAAFGLP 63

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +              AL +APTRELAVQ   E+  L     + +A   GG S+  +
Sbjct: 64  ILEIVDPS------LYQVQALILAPTRELAVQNAEEINSLKGDRRLEIAAVYGGASMELQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+VVGTPGR+ DH+R   L++ HLK VVLDEADEMLD+GF +DIE +L  +P
Sbjct: 118 LRKLRRGVHVVVGTPGRILDHLRRGSLHLEHLKFVVLDEADEMLDMGFIEDIEEVLKQTP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML FSAT+   I  LA+ +  +A  V I  +    +  D   V V  SD+  A+  
Sbjct: 178 AEKRMLCFSATMPQPIQRLAERFMHNAQVVKIQQDTMTSNLTDQIYVEVKESDKLEALTR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        I+FC T+       + L +  +    L G+LSQ++R   L  MR+    +
Sbjct: 238 IIDMEENFYGIIFCRTKVQCDEVGRKLMDRGYDAEPLHGDLSQKQRELILHKMRERSISI 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL  VI+  L  +P+  +HR GRTGRAG+ G+++  +     +R  
Sbjct: 298 IVATDVAARGIDISDLTHVINFSLPEDPDAYIHRVGRTGRAGKTGIAITFVAPREFKRFS 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PE 414
            +   +  ++  E  P    I      RIL   + +     +    + +     D   PE
Sbjct: 358 FIKNVSKTNIRRESVPEASEIIRIKRARILSRLMAISDDDAETSHFLPIAEQLLDGKKPE 417

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            + A  L           +   ++      R     R  +          G +   ++ G
Sbjct: 418 IVVAALLDHFYKDELDVSKYQHITGGRDDRRGDRPVREEES---------GFTRLFIARG 468

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            K   + R L+  L    G   + I  + V+ + +FV       + + +T          
Sbjct: 469 RKDGLDKRLLVDYLIEQVGAEDRDIQDVSVREEFSFVSAPLQVAERILKTFGEQGPEGKP 528

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +   KPD    K+   ++++ +    +     + A ++
Sbjct: 529 MISRAKPDNPNGKNLSGRTRDDR----RPSYSDRPARRS 563


>gi|295696219|ref|YP_003589457.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
 gi|295411821|gb|ADG06313.1| DEAD/DEAH box helicase domain protein [Bacillus tusciae DSM 2912]
          Length = 526

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 160/550 (29%), Positives = 264/550 (48%), Gaps = 30/550 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + + + +A+ + G+   + +Q A +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFTDFQLSRRVQQAIDDMGFEEPSPIQAACIPLVLQGKDVIGQAQTGTGKTAAFGVPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL + PTRELA+QV  EL  +     V      GG S+  + 
Sbjct: 61  IEMM-------GTGRHVQALILTPTRELAIQVAGELRKIAKYARVRTLPIYGGQSIGHQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G  +V+GTPGR+ DH+R   L +  ++ VVLDEADEMLD+GF +DIE IL  +P+
Sbjct: 114 RALQQGVGVVIGTPGRVLDHLRRGTLKLDKVRTVVLDEADEMLDMGFIEDIEAILKETPQ 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    +  LA  Y K+   V +         ID     V   ++  ++  I
Sbjct: 174 ERQTLLFSATFPHEVKQLAVRYMKNPEHVTVNRGEMTVPLIDQIYYKVLERNKLESLCRI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+FC T+  V   T+ L    + V  L G+LSQ +R   ++  R+G     
Sbjct: 234 IDSEDVSLGIIFCRTKRGVDELTEALLARGYLVDGLHGDLSQAQRDRVMKKFRNGDIEFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  +PE+ +HR GRTGRAGR+G+++ ++     +  ++
Sbjct: 294 VATDVAARGIDVTNVTHVINYDIPQDPESYVHRIGRTGRAGRRGLAITLVTPREFKLLKQ 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + RE    +V    P++  + ER A+   +       +    + + ++  LL + DP   
Sbjct: 354 IERETQAPLVGREVPTLADVAERVAENWRERLRRTVQEGGIANYRAILGSLLDEFDPVD- 412

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                        A +  +   L +G +   D         G      G   F L++G  
Sbjct: 413 ---------LAAAALKLASADDLHTGEEEDYD--------FGETGASPGMVRFFLNIGRS 455

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY- 535
                  L+ ++   +GI  Q+IG I +     FVEV  +    +   ++  +   L+  
Sbjct: 456 ANVGPGDLVRIISEETGIPGQAIGKIDLYDRFAFVEVEEESAPFVFEALRQARINGLRVN 515

Query: 536 LGGEKPDFRG 545
           L   +P  R 
Sbjct: 516 LEPARPRSRR 525


>gi|227499384|ref|ZP_03929495.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227218446|gb|EEI83689.1| ATP-dependent RNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 553

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 161/549 (29%), Positives = 271/549 (49%), Gaps = 21/549 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI + I +A+ + GY N + +QE  +   L  +DV+  AQTG+GKT AF + L 
Sbjct: 15  MKFNEFNIGEDILQAIDDMGYTNPSPIQEETIQYLLDGRDVIGQAQTGTGKTAAFAIPLV 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             + A            +L + PTREL +QV RE+E L      +  +   GG  + ++ 
Sbjct: 75  ENVEAN-------DITQSLILCPTRELCMQVAREVEKLTKYKKDIKVLALYGGTQIVKQI 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA IVVGTPGR+ D ++ + L +  LK VVLDEADEM D+GFRDD++ ILD++  
Sbjct: 128 KALEKGAEIVVGTPGRVIDLMKRRVLKLDMLKNVVLDEADEMFDMGFRDDMKVILDATNP 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+   FSAT+       +K YQ +  ++ I ++      ID   + +  + ++  +  +
Sbjct: 188 QRQTCFFSATMGKEFAEFSKLYQNNPQKIVIKADEVTVEKIDQYYIKLKEAMKEETLTRL 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  K AIVFC+T+  V +  + L +  + V  L G+L Q  R   ++  R+   ++ 
Sbjct: 248 LEINNPKLAIVFCNTKRKVDKLVEELTKKSYLVDGLHGDLKQSARDQVMKKFRNKTIQIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D++LVI+ +L    E  +HR GRT RAG+ G+S  +I    + R   
Sbjct: 308 IATDVAARGLDIDDVDLVINYDLPQLDEYYVHRIGRTARAGKSGVSYSLIAGRDRDRLRA 367

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAK-HDPE 414
           + +     +   P PS+  +  +    +++   + L        EK ++  L+ K +DP 
Sbjct: 368 IEKYTKADIKEIPIPSLIQMDRKSENNLIENLSEKLEASPKLDREKAILIRLMEKGYDPF 427

Query: 415 KIAAGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            IA   L  +   +     E+I  V       + +  +           + +  +   L+
Sbjct: 428 LIAQVLLSEKFSDSNSNHHEKIAGVDT----KKEKAKADNKNNKKAKNKSDEKMATLFLN 483

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK--G 530
            G     +   ++  L R + +    IG IR+Q   +F++V    V    R +   K  G
Sbjct: 484 RGKIDNFDKNKIIKALNRLAKVPNNKIGQIRIQKSYSFIDVDKSVVYECIRALNNKKISG 543

Query: 531 IQLKYLGGE 539
            ++K    +
Sbjct: 544 KKVKVEESK 552


>gi|242278297|ref|YP_002990426.1| DEAD/DEAH box helicase [Desulfovibrio salexigens DSM 2638]
 gi|242121191|gb|ACS78887.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 521

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 165/531 (31%), Positives = 261/531 (49%), Gaps = 28/531 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M+ F N+     I EAL ++G+   T +QE  +   L   KD++  AQTG+GKT AFGL 
Sbjct: 1   MEKFRNLGLSDAIIEALEKKGFTAPTPIQEKTIPMLLSGEKDIVGQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +         A    A+ + PTRELA+QV  E+        V VA   GG  +  +
Sbjct: 61  IIENV------REGAGHVQAIVLTPTRELAMQVADEIISFRGSRKVFVATVYGGQPMLPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ GA IVVGTPGR+ DHIR K L++S +   VLDEADEM ++GF +++  I++++ 
Sbjct: 115 LKALKRGADIVVGTPGRVLDHIRRKTLDLSQINNFVLDEADEMCNMGFLEEVSEIMENAG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR L+FSAT+   +  +AK +  D   V++  E  +    +     V   DR  A+  
Sbjct: 175 EDRRTLLFSATMPREVMNIAKKFMGDYDVVSVKREKDEAPLTELIFHEVNERDRFEALCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        +VFC TRA   R    LAE  +    + G+LSQ  R + L   R  R ++
Sbjct: 235 VVDAQPEFYGLVFCRTRADADRVAGTLAERGYPAEPIHGDLSQARREDILMRFRKRRCKI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PDL  V++  L  +P++ +HR GRTGRAG+KG++V +I      +  
Sbjct: 295 LVATDVAARGIDVPDLSHVVNFALPQDPQSFVHRVGRTGRAGKKGVAVTLITPREFGKLR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEK 415
            + +   + V  +P P+++ + +    R+  +   +           +   LL   DP +
Sbjct: 355 YITKITKLRVDKKPLPTIDQVIDVKKSRMGAELSEIVEAGKHLSYLDLAHELLEGVDPIE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             A  L+  + G+                  +   R  +  GG   N +G   F+  +G 
Sbjct: 415 AVAALLKHSQGGVL----------------DKRSYRKIEECGGPAAN-RGRVRFTAHIGR 457

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                 R L+ M+CR + IN   I  +++Q   +   V A   D + R V 
Sbjct: 458 AHGMTPRKLVDMICRRARINPVRIQHVKIQGRQSTFTVPAGDSDNVMRAVN 508


>gi|188995896|ref|YP_001930148.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595576|dbj|BAG34551.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 604

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 169/581 (29%), Positives = 277/581 (47%), Gaps = 25/581 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   +   +A++E G+     VQE ++   L  + D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +     R      P AL + PTREL +Q+  +L         V  +   GG  +  
Sbjct: 61  LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G  IVV TPGRL D +R + +++S +  VVLDEADEML++GF +D+E IL   
Sbjct: 115 QIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R +L+FSAT+   I+ +A +Y KD   + I ++N  +++I +   +V+   +  A+ 
Sbjct: 175 PSERHLLLFSATMPKEISKIAASYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     IVFC TR         L +  +   +L G+LSQ +R   +Q  R    +
Sbjct: 235 RIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VIH  L  + E+  HRSGRT RAG+ G+S+ +     + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + + R     +     PS   I E+     A RI +  +   +        V+  L   +
Sbjct: 355 KNIERTMQKQIERARIPSGAEICEKQLFNLADRIERVDIENTTAIDSVLNEVNKKLEWIE 414

Query: 413 PEKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            +++    + +     L   +    V  V  R +            G+ +  +G +   +
Sbjct: 415 KDELIRRVMALEFNRMLDYYQRAEDVEEVVERKKDEASRDRKNRRRGAGEAEEGMTRLFI 474

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQ-SIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + G   +     L+ ++ R   I  + +IG I + P   F +V      + V+ L R   
Sbjct: 475 NFGKMDQMFPNRLIELINRC--IPGRVNIGRIDLMPRFAFFDVDEFEAKNVVETLNRYEV 532

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFK--SKNSQDGATKRFK 565
             + I ++Y    K D+ G K  G K  S   +D   +R +
Sbjct: 533 DGRRIHVEYA-DAKKDYAGGKKGGDKNFSARRKDFDGRRSE 572


>gi|212550405|ref|YP_002308722.1| ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548643|dbj|BAG83311.1| putative ATP-dependent RNA helicase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 548

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 147/539 (27%), Positives = 253/539 (46%), Gaps = 19/539 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A++E GY N   +QE ++   L +  +V+  A+TG+GKT AFGL 
Sbjct: 1   MKTFEELGIIPDILKAITEIGYENPMPIQEKVIPYLLGKGNEVIALAETGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHR 116
           +   +   ++       P A+ + PTREL +Q+  ++           +    GG ++  
Sbjct: 61  ILQQIQIHHE------HPQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIYGGSNIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G HIVV T GRL D I+   +++ +++ VVLDEADEML +GF + I+ IL   
Sbjct: 115 QIKALRGGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEILRHI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I+ + K Y ++   + I  +N     + +   +V++SDR   + 
Sbjct: 175 PEDRNMLLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYMVSVSDRYFLLK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ YH     IVFC T+         L    + V AL G+LSQ +R   +Q  R    +
Sbjct: 235 RLVDYHPNIYGIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+D+  L  +I+  L S+ E+ +HRSGRTGRAG+ G S+ +I    + + 
Sbjct: 295 LLVATDVASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEKFKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---P 413
             + R  N +      PS + I ++     +     ++  +G+ K +   +  K D    
Sbjct: 355 RAIERCINKTFEKGIIPSGKEICKKRLFHFIDKLEGVEVNEGEIKDIFPSIYYKLDWLSK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK------VGGGSRDNFKGSS 467
           E I    +      L    +      +      R+  R                  +G  
Sbjct: 415 EDIVKRIISNEFNRLIDYYQDVNEIKIPKEKDIRNKRRLEAKTICTFKKDNRNLPSEGYM 474

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           W  +++G         L+ +L  +    + ++G I +    TF EV       + + + 
Sbjct: 475 WLFINLGRVDGLIPSKLIGLLNDNISGRKVNVGKIDLMRKFTFFEVKKTDKQRVIQNLN 533


>gi|332878110|ref|ZP_08445839.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332683848|gb|EGJ56716.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 582

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 269/570 (47%), Gaps = 30/570 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M +FE +   + I  A+++ G+   + +Q+  +   L +  D++  AQTG+GKT AFG  
Sbjct: 1   MNLFEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  +      +     L ++PTREL +Q+  EL+        V  V   GG S+  
Sbjct: 61  LLQLIDTD------SKLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK++   +FSAT+   +  +A+ + +  + + + + N+  S + +   +V    R  A+ 
Sbjct: 175 PKEKSTWLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + +        +  P+   I E     +      + ++    D    +   L   D E
Sbjct: 355 KEIEKIIKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIEDYLPAIYKELQHIDRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++      +         +   V          +D++  + GG S     G   + +++G
Sbjct: 415 ELIKKIFAVEFTRFFNYYKNAEVLP-------EEDAKESRKGGDS-----GEVRYFINIG 462

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +   + + L   L  +  + R  +  + V+   +F    AD  DL+  T   D  +  +
Sbjct: 463 ERDGYDWKTLKDFLKATLNLGRDDVFKVDVKNSFSFFNTEADQADLVMSTF-ADFRMDGR 521

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRF 564
           ++  E  D         +S+  + G   R 
Sbjct: 522 FINVEISD-----KGAGRSRGDKKGGESRR 546


>gi|333029481|ref|ZP_08457542.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740078|gb|EGJ70560.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 606

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 161/584 (27%), Positives = 273/584 (46%), Gaps = 20/584 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A++E GY +   VQE ++   L    DV+  AQTG+GKT AFGL 
Sbjct: 1   MKNFEELGVSAEILKAITEMGYEHPMPVQEEVVPYLLGENNDVVALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +  EN        P +L + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  IIQKVDVEN------RVPQSLVLCPTRELCLQIADDLYNYSKYIKGLKVIPVYGGSSIDS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G HI+V TPGRL D +    +++S +K VV+DEADEML++GF + I  IL   
Sbjct: 115 QIRSLKRGVHIIVATPGRLLDLMNRGTVSLSTIKNVVMDEADEMLNMGFTESINSILQDV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R  L+FSAT+SP I  ++KNY ++   + I  +N    ++ +    V   D+  A+ 
Sbjct: 175 PKDRNTLLFSATMSPEIARISKNYLQNPKEITIGRKNEGSQNVKHVVYKVHAKDKYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  ++     I+FC TR        +L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RIADFYPQIYGIIFCRTRRETQEIADLLIKDGYNADSLHGELSQAQRDAVMQKFRMRNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+ G S+ +I      + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLRESGKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---P 413
             + +           P+ E I E+   +++ +   +   + + +  +  +  K D    
Sbjct: 355 RDIEKIIGKKFENGELPTGEQICEQQIIKVIDEVEKVKVNEEEIEHFLPEIYRKLDWLSK 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    + +         +     + +  D  RD       G   R   +G +   +++
Sbjct: 415 EDVIKRMVSLEFNRFLEYYQDRE-DIEAPTDNRRDRRERNDRGNSRRQAQEGYTRLFINL 473

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DK 529
           G         L+ +L +++   R  +G I +  + +F EV       + + +      D+
Sbjct: 474 GKTDNFFPHELIDLLNQNTR-RRVELGKIDLMRNFSFFEVEERSTKDVLKGLNNKQWGDR 532

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKS-KNSQDGATKRFKRFKGASK 572
            I ++         R     G ++ +NS      R +R   +++
Sbjct: 533 KIVVEVASENDTQGRSSNRGGDRTQRNSNRRKPSRSERGYTSAR 576


>gi|217077055|ref|YP_002334771.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
 gi|217036908|gb|ACJ75430.1| ATP-dependent RNA helicase [Thermosipho africanus TCF52B]
          Length = 516

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 270/527 (51%), Gaps = 32/527 (6%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALAS 60
           FE  N+ +    A++E+G+ N T VQE ++   L+ EK+++V A+TG+GKT AFG+ L  
Sbjct: 3   FEDFNLSEKTLRAINEKGFENPTPVQEKVIPTLLKKEKNLIVQAKTGTGKTAAFGIPLIE 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           A+ + PTRELA+QV  E+  L  +  + +    GG S+ R+   
Sbjct: 63  LLENKG-------YVQAIILTPTRELALQVSEEINSL-KRKKLKILPIYGGQSIQRQIDH 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DH+    +++S +   +LDEADEMLD+GF DD+E IL S+   +
Sbjct: 115 LRKGVDIVVGTPGRILDHLERGTIDLSKVDYFILDEADEMLDMGFIDDVEKILKSTSDDK 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             LMFSATI   I  LAK Y K+   + I  +    +  +   + +  SD+  A+  I+ 
Sbjct: 175 FFLMFSATIPKRIIDLAKKYIKNYEVIKIQDKQLTTNLTEQIYIELRESDKFEALCRIID 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VFC T+  V   +  L E  +   AL G+ SQ +R   L+  R+ +  + +A
Sbjct: 235 MEEEFYGMVFCRTKVEVDTVSSKLIERGYDAEALHGDFSQYQRERVLKKFREKKVNILVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI+  +  NPE+ +HR GRTGRAG++G+++  +     R+  R+ 
Sbjct: 295 TDVAARGIDITGLTHVINYSIPLNPEHYVHRIGRTGRAGKEGIAITFVTPREYRQLFRIK 354

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKIAAG 419
           + +N  +     PSV+ I +  A++I +  +  +S + D   ++   LL +   E++ A 
Sbjct: 355 KFSNAKIKEGKVPSVDQIIKTKAKKIKKQVVENNSKKHDIYYELAKELLNELPAEEVVAT 414

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L +    L  PE    +S +S +                    +      +++G +   
Sbjct: 415 LLSMGYKSLN-PESYNNISQISSKK-------------------EEVVRLFIALGKQSGI 454

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             + L+  + +++GI+ + I  I V    +F+ V     +++    K
Sbjct: 455 NKKQLIDYIVKNTGISSKVISDITVLDKFSFITVPYREAEIILSVFK 501


>gi|91214661|ref|ZP_01251634.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
 gi|91187088|gb|EAS73458.1| putative RNA helicase dead-box protein [Psychroflexus torquis ATCC
           700755]
          Length = 586

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 151/590 (25%), Positives = 271/590 (45%), Gaps = 33/590 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE++     I  A+ + G+ + + VQE  +   L E  D++  AQTG+GKT AFG  
Sbjct: 1   MTTFESLGLSPEILRAIEDLGFESPSEVQEQTIPVLLEESTDMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +   + +         L ++PTREL +Q+  EL+        +  V   GG S+  
Sbjct: 61  LIQNIDLNSKK------TQGLILSPTRELCMQITNELKQYSKYYQNLSTVAVYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA I+V TPGR+ D I+   ++IS++   +LDEADEML++GF +DI+ IL  S
Sbjct: 115 QARQIKKGAQIIVATPGRMKDMIQRNIIDISNISICILDEADEMLNMGFFEDIKEILSHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++   +FSAT+   ++ +AK + K+   + +  +N     + +   +V   DR +A+ 
Sbjct: 175 SDQKNTWLFSATMPKEVSIIAKKFMKNPKEITVGQKNISTKSVSHEYFIVGGRDRYSAVK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +    A+VFC T+    +  + L E  +   AL G+LSQ +R   +   R  + +
Sbjct: 235 RVVDANPDIYAVVFCRTKRDAQKVAEKLIEDGYSASALHGDLSQAQRDMVMNSFRRKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG++G S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIEIYTHRSGRTGRAGKEGKSLVIVTKSEVRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPE 414
           +++ R        E  PS + I +R    +  +    +     +     ++    +   E
Sbjct: 355 KQVERMIGQKFTQEELPSGDEICKRQLFHLADEIKKTEINHAIDPFIPNLEAEFEELSKE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            I   F  +  +      +  P  +    D              S  ++   + F +++G
Sbjct: 415 DIIKKFFSVEFSRFHNYYKNAPKVVQHSADE----------SYSSGKDYGDETRFFINIG 464

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKG 530
            K   +   +   L     ++R  +  + V+   +F  V+ D V+ +    +      + 
Sbjct: 465 EKDGFDWMSMKDFLKDQLELDRDGVAKVDVKNTFSFFNVATDDVEKVEGVFESFMLKGRH 524

Query: 531 IQLKYLGGEKPDFRGY------KSSGFKSKNSQDGATKR-FKRFKGASKN 573
           + ++    +K    G       KS   K +   D      FK  K    N
Sbjct: 525 VNVEITKDQKSGGGGGGRKGGDKSRDRKPRKRFDKNNSSDFKGKKPGGSN 574


>gi|39939200|ref|NP_950966.1| superfamily II DNA/RNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722309|dbj|BAD04799.1| superfamily II DNA and RNA helicase [Onion yellows phytoplasma
           OY-M]
          Length = 552

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 158/548 (28%), Positives = 270/548 (49%), Gaps = 27/548 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +FE +P  +   +AL E  +++ T +Q  ++   ++  DV+  AQTG+GKT AFG+ + 
Sbjct: 3   TLFEQLPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPII 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRER 118
             +  +  +        +L + PTREL +QV  EL+ L      + +AV  GG S  ++ 
Sbjct: 63  EKIEPKIQK------TQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H+++ TPGR  DH+    +++S LK + LDEADEML +GF++ +E IL   P+
Sbjct: 117 RALEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  +A  YQKD   + +  +N   + I+    LV   D+   +V +
Sbjct: 177 ERQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +AI+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ 
Sbjct: 237 LDLKKDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D+++VI+ +L    E  +HR GRTGRAG+KG++  +I      + ++
Sbjct: 297 IATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKK 356

Query: 359 LFREANVSVVWEPAPSVEAIR---ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L       +     PSV++I+    +D ++ L + +  ++      ++   LL     E+
Sbjct: 357 LEYYLKEKITLLDIPSVQSIKLQNAKDLEKKLLNIIEKNNEDATPNQLAQKLLETFSSEQ 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRDNFKGSSW--- 468
           I  G L+          +I P  + +     R RF  +SR    G  +    K       
Sbjct: 417 IIQGLLKKFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYGSNNSYGNKSYQRANS 476

Query: 469 ----FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +++G K       L+ +L     I  ++IG I+     T  EV           
Sbjct: 477 NFIEVVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEV----ASRFWNQ 532

Query: 525 VKLDKGIQ 532
           +K    I+
Sbjct: 533 MKSKTNIR 540


>gi|34539956|ref|NP_904435.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34396267|gb|AAQ65334.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 604

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 167/587 (28%), Positives = 278/587 (47%), Gaps = 23/587 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   +   +A++E G+     VQE ++   L  + D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFEELGIAKPFLKAIAELGFEQPMPVQEEVIPYLLGEDIDLIALAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +     R      P AL + PTREL +Q+  +L         V  +   GG  +  
Sbjct: 61  LLQKIDLSGGR------PQALVLCPTRELCLQIADDLNSYSKYLSDVHILPVYGGTPIDA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G  IVV TPGRL D +R + +++S +  VVLDEADEML++GF +D+E IL   
Sbjct: 115 QIRALRRGVQIVVATPGRLLDLMRREAVSLSDIHTVVLDEADEMLNMGFAEDLEQILADI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R +L+FSAT+   I+ +A +Y KD   + I ++N  +++I +   +V+   +  A+ 
Sbjct: 175 PSERHLLLFSATMPKEISKIATSYMKDPKEIVIGNKNEGNANIKHLYYMVSARHKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y+     IVFC TR         L +  +   +L G+LSQ +R   +Q  R    +
Sbjct: 235 RIADYYPNIYGIVFCRTRKETQEIADQLIQDGYNADSLHGDLSQAQRDYVMQKFRVRNLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VIH  L  + E+  HRSGRT RAG+ G+S+ +     + + 
Sbjct: 295 LLVATDVAARGLDVNDLTHVIHFGLPDDVESYTHRSGRTARAGKTGLSIAICHVKEKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + + R     +     PS   I E+     A RI +  +   +        V+  L   +
Sbjct: 355 KNIERTMQKQIERARIPSGAEICEKQLFNLADRIERVDIENTTAIDSVLNEVNKKLEWIE 414

Query: 413 PEKIAAGFLRIHRAG-LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            +++    + +     L   +    V  V  R +            G+ +  +G +   +
Sbjct: 415 KDELIRRVMALEFNRMLDYYQRAEDVEEVVERKKDEVSGDRKNRKRGAGEAEEGMTRLFI 474

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQ-SIGAIRVQPDLTFVEVSA----DGVDLLRRTVK 526
           + G   +     L+ ++ R   I  + +IG I + P   F +V      + V+ L R   
Sbjct: 475 NFGKMDQMFPNRLIELINRC--IPGRVNIGRIDLMPRFAFFDVDEFEAKNVVETLNRYEV 532

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + I ++Y    K D+ G K  G K+ +++       +     S+ 
Sbjct: 533 DGRRIHVEYA-DTKKDYAGGKKGGDKNFSARRKDFDGRRSENPTSRK 578


>gi|85057334|ref|YP_456250.1| superfamily II DNA/RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789439|gb|ABC65171.1| superfamily II DNA and RNA helicase [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 547

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 158/543 (29%), Positives = 271/543 (49%), Gaps = 22/543 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +FE +P  +   +AL E  +++ T +Q  ++   ++  DV+  AQTG+GKT AFG+ + 
Sbjct: 3   TLFEQLPILEQTKKALKELNFIDTTPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIPII 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRER 118
             +  +  +        +L + PTREL +QV  EL+ L      + +AV  GG S  ++ 
Sbjct: 63  EKINPKIQK------TQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H+++ TPGR  DH+    +++S LK + LDEADEML +GF++ +E IL   P+
Sbjct: 117 RSLEAKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  +A  YQKD   + +  +N   + I+    LV   D+   +V +
Sbjct: 177 ERQTVLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ 
Sbjct: 237 LDLKKDYSTILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D+++VI+ +L    E  +HR GRTGRAG+KG++  +I      + ++
Sbjct: 297 IATDVAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKK 356

Query: 359 LFREANVSVVWEPAPSVEAIR---ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L       +     PSV++I+    +D ++ + + +  +  +     +   LL     E+
Sbjct: 357 LEYYLKEKITLLDIPSVQSIKLQNAKDLEKKILNIIEKNKEETTPNPLAQKLLENFSSEQ 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSG----RDRFRDDSRAFKVGGGSRDNFKGSSWFS- 470
           I  G L+          EI P  + +     R RF  +SR    G       K S++   
Sbjct: 417 IIQGLLKNFLPKERNYTEIIPPRINTNNSFTRSRFGFESRFGSYGSNDSYKRKNSNFIEV 476

Query: 471 -LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            +++G K       L+ +L     I  ++IG I+     T  EV +         +K   
Sbjct: 477 VINLGKKDNINPPVLLKLLKDHFKIYGKNIGNIKHLTHETIFEVES----RFWNQMKSKS 532

Query: 530 GIQ 532
            I+
Sbjct: 533 NIR 535


>gi|126696546|ref|YP_001091432.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543589|gb|ABO17831.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 593

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 150/545 (27%), Positives = 252/545 (46%), Gaps = 27/545 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             Q I  +L  +GY N T +Q+A +   +  +D+L  AQTG+GKT AF L L   L    
Sbjct: 58  FNQSILNSLINKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKLTDNK 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVG-RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  +       L + PTRELA QV      +    +        GG     +   L+   
Sbjct: 118 ELNAK-----VLVMTPTRELATQVAESFKSYSSESSNFKTVAIYGGTDYRNQISALKRKV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR     I  +  +VLDEADEML++GF +DIE+I+D  P+ ++M++F
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKIKDINCLVLDEADEMLNMGFLEDIEWIIDQLPENKQMVLF 232

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK Y  D   + I S  ++   I  + + V    + +A +  +     +
Sbjct: 233 SATMPNEIRNIAKKYLNDPAEILIKSVKKETQLISQKFLYVQRHHKLDA-LKRILELNNE 291

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+   +   + L      V  L+G++ Q +R N +  ++ G   + +ATDVAA
Sbjct: 292 GVIIFVRTKLLTTSIAEALENSGHTVAVLNGDIPQNQRENTVDRLKKGFINILVATDVAA 351

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++ +   + E   HR GRTGRAGR G ++  +    +     L      
Sbjct: 352 RGLDVERIKLVVNYDFPFDKETYTHRIGRTGRAGRSGEAILFVNLREKHFLRNLENSTRT 411

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM--------VDVLLAKHDPEK-- 415
            +     PS + I E+  ++++ D     S+  DE +         +D L  K+  +   
Sbjct: 412 KIEEINIPSNKIINEKRMEKLI-DSFNESSLAKDENEENKALIIDVLDNLKEKYSMDDSN 470

Query: 416 --IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWF 469
             +AA  L I        ++ + ++  +  DR R +         S             +
Sbjct: 471 IAMAAINLVIGNKSFFVNDDDSWINKQNNTDRNRSNRNNNNRMRNSSRRNNYQNDSFETY 530

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             + G         ++  +C S+ IN +SIG I++  D + V++     DL R T    K
Sbjct: 531 KFNFGKFDGVRVANIISSICNSTNINGRSIGKIQIFNDYSLVDLPR---DLHRETKNKLK 587

Query: 530 GIQLK 534
            I+++
Sbjct: 588 KIKVR 592


>gi|315224756|ref|ZP_07866579.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
 gi|314945384|gb|EFS97410.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga
           ochracea F0287]
          Length = 584

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 148/589 (25%), Positives = 268/589 (45%), Gaps = 36/589 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M +FE +   + I +A+S+ G+   + +Q+  +   L    D++  AQTG+GKT  FG  
Sbjct: 1   MNLFEQLGLNEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTATFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +  +      +     L ++PTREL +Q+  EL         V  V   GG S+  
Sbjct: 61  LLQLIDTD------SRVTQGLILSPTRELCLQIASELRNYAKYLTKVNVVAVYGGASIEE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGR+ D IR   ++ISH+   VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARSLKKGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   +  +A+ + +  + + + + N+  + + +   +V+   R  A+ 
Sbjct: 175 PQEKSTWLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++P++  ++ 
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + +        +  PS   I E     +        ++    D    +   L + + E
Sbjct: 355 KTIEKMIGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELQEVNRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++      +         +      V       ++ R    GG S         + +++G
Sbjct: 415 ELIKKIFSVEFTRFFNYYKNAENLSV-------ENERESHSGGSS-----DEVRYFINIG 462

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKG 530
            +   + + L   L  +  + R  +  + V+   +F    AD  DL+  T        + 
Sbjct: 463 ERDGYDWKSLKDFLKATLNLGRDDVFKVDVKNSFSFFNTDADLSDLVMSTFTDFQMDGRF 522

Query: 531 IQLKY--------LGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           I ++          GG K      +  G     ++    +  ++ K A 
Sbjct: 523 INVELSTKGAGRDRGGRKRGNDDGRRHGNDESRNRKKGQRESRKQKTAE 571


>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 525

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 146/545 (26%), Positives = 252/545 (46%), Gaps = 35/545 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+S+ G+   + +QE  +   L   D++  AQTG+GKT A+ L +        
Sbjct: 11  LKESIVKAISDLGFTKPSQIQEQSIPVTLSGADLIGQAQTGTGKTAAYSLPII------- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGA 125
            + S      +L +APTRELAVQV  E++ L     +V     GG S+ R+ R   +   
Sbjct: 64  TKMSDNRGIKSLILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKGDV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D ++ K L++  ++ +VLDEADEML++GF DDI+ IL  +P +R+ L+F
Sbjct: 124 DIVVGTPGRILDLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVR-VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LAK Y K   + V+I   +   S I+    ++    R  A+  +L     
Sbjct: 184 SATMPDPIAKLAKKYMKPDAKLVSIKRSSLTVSKIEQSYFMINNKHRLEALCRLLDLDNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + L    + V  + G+++Q  R   L   ++G   + IATDVA
Sbjct: 244 SSAIIFCRTKRGVDELVQELQSKGYMVEGMHGDMTQAHRLTTLNKFKEGTLNLLIATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  V + +L  + E+ +HR GRTGRA + G +  ++        +++     
Sbjct: 304 ARGIDVEGVTHVFNYDLPQDVESYVHRIGRTGRANKSGTAYSLVTPKDFSMLKQIQNVTK 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAGFL 421
            S+  +P P+ E I  +  + ++ +        GD  K +   +     +D   I +  +
Sbjct: 364 SSITQKPVPTAEEINNKKFKDMMSEVESTIK-AGDLTKFIPSAIELTESYDAVSIISALM 422

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           ++        +  +       ++                           SVG +     
Sbjct: 423 KMKFENEIVFDYSSNKLEAPKKE---------------------DVRLFFSVGKRDGLTP 461

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           + L+  +   + +N  +IG I +  + +FV V       + +     K I  K +  E  
Sbjct: 462 KVLINYIKDMTKVNASAIGQIDLMENFSFVTVDESISSKILKNCPGGK-INKKKVNVEVA 520

Query: 542 DFRGY 546
           + R  
Sbjct: 521 NKRKR 525


>gi|218290125|ref|ZP_03494287.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239834|gb|EED07023.1| DEAD/DEAH box helicase domain protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 465

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 139/437 (31%), Positives = 230/437 (52%), Gaps = 11/437 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  + + + +A+ + G+   + +Q A +   L  +DV+  AQTG+GKT AFG+ L
Sbjct: 17  MSSFESFGLNRRVLQAIHDMGFEEPSPIQAACIPVVLEGRDVIGQAQTGTGKTAAFGIPL 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    R S      A+ + PTRELA+QV  E+  +     V      GG S+  + 
Sbjct: 77  VE-------RVSTEPRVQAIVLTPTRELAIQVAGEIRKIAKYKRVRSVPIYGGQSIVHQI 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IV+GTPGR+ DHI    L++  ++ VVLDEADEMLD+GF DDIE IL  +P 
Sbjct: 130 RALKQGVQIVIGTPGRVLDHIHRGTLSLGDVRMVVLDEADEMLDMGFIDDIEAILRETPS 189

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    +  LA  Y +D   + +         ID     V   ++ +++  I
Sbjct: 190 DRQTMLFSATFPNEVKRLALRYMRDPQHITVNRGEVTVPQIDQVCYKVLERNKLDSLCRI 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  I+FC T+  V    + L    +    L G+LSQ +R   ++  R     + 
Sbjct: 250 VDSEDIQLGIIFCRTKRGVDDLVEALLARGYLADGLHGDLSQAQRDRVMRKFRKNEIELL 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ ++  +PE+ +HR GRTGRAG++G+++ ++     +  ++
Sbjct: 310 VATDVAARGLDVDDVTHVINYDVPQDPESYVHRIGRTGRAGKRGLAITLVTPREYKLLKQ 369

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + RE    +     PS+E + ER A+  R     +  +      + ++  L+ +HDP  I
Sbjct: 370 IEREIKQKITVREVPSLEDVAERQAEMWRSKIVDVIREGGLAPYRAILSGLVDEHDPIDI 429

Query: 417 AAGFLRIHRAGLCAPEE 433
           A+  L++  +G  +  E
Sbjct: 430 ASALLKLASSGDGSRTE 446


>gi|160915730|ref|ZP_02077938.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
 gi|158432206|gb|EDP10495.1| hypothetical protein EUBDOL_01739 [Eubacterium dolichum DSM 3991]
          Length = 572

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 158/571 (27%), Positives = 268/571 (46%), Gaps = 37/571 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I  A+SE GY   T +Q   +   +  KDVL  + TG+GKT AFG+  
Sbjct: 1   MTTFNELHISEAILRAVSEMGYEQATEIQAKAIPYIMEGKDVLGRSNTGTGKTAAFGIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +  ++   +      AL I PTREL  QV  EL        GV +    GG  + R+
Sbjct: 61  IEMVQPQDKYAN------ALIICPTRELVTQVAMELRKFSKYKEGVKIVPIYGGQPIERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IVVGTPGR+ DH+R + L +S ++ V+LDEADEML++GF++DIE IL   P
Sbjct: 115 IQLLKRGCGIVVGTPGRIMDHLRRRTLKLSDIRMVILDEADEMLNMGFKEDIEEILSLMP 174

Query: 178 KKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            +R      FSAT    I  +AK +Q D V V I S  R    ++     V    + NA+
Sbjct: 175 SERSYQTILFSATWPSEIMRIAKEFQNDPVTVEIKSAQRTIDTVEQLYYEVPRGKKANAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L ++  +  ++F +T+  V      L +H  +  AL G++ Q+ RS  ++  R G  
Sbjct: 235 RVLLNHYDPELCMIFANTKKMVDELQGELNKHDIKACALHGDMKQEFRSRVMEQFRSGSM 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR- 354
            + IATDVAARGID+ D++LVI+ ++  + E  +HR GRTGRAG+KG+++ +I    QR 
Sbjct: 295 PILIATDVAARGIDVDDVDLVINFDIPQDNEYYIHRIGRTGRAGKKGLAITLISGGRQRS 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAK-H 411
             + + R    ++     P+   ++  + +  ++       + +  +  ++ + LLA+  
Sbjct: 355 ELKNIMRYTKTNIKHHALPTSAQMQAHNRKAYIEGVKLACDEGVTDESMEIANELLAEGI 414

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             E I +  + +                     +        +           +     
Sbjct: 415 AVENIISALISMTY-------------------KNEIIDIEEEEHVKRYAADFEAVTLKF 455

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--K 529
           S+G +   +   ++  +    GI+ ++IG I V+ + + V+V A  VDL+   ++    +
Sbjct: 456 SIGKQDGVKTGNIVAAISEECGISSKAIGRIDVRSNFSLVDVDAAKVDLVLSNMQRAHIR 515

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGA 560
           G ++       P  R        ++N     
Sbjct: 516 GREVSVEIDHAP-KRKNAGKEKNTRNKMKNE 545


>gi|150009493|ref|YP_001304236.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256838225|ref|ZP_05543735.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|149937917|gb|ABR44614.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|256739144|gb|EEU52468.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
          Length = 610

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 159/588 (27%), Positives = 270/588 (45%), Gaps = 44/588 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +     I +A+ E GY +   VQE ++   L  + DV+  AQTG+GKT A+GL 
Sbjct: 1   MKTFEELGVAAPILKAIQEMGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +            P AL + PTREL +Q+  +L         +  +   GG S+  
Sbjct: 61  ILQKINVSQ------YQPQALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIES 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L+ G H+VV TPGRL D +  K +++S++K V+LDEADEML++GF D I  IL + 
Sbjct: 115 QIKTLKRGVHVVVATPGRLIDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R ML+FSAT+   I ++ K Y KD   + I  +N  + +I     +V   D+  A+ 
Sbjct: 175 PENRNMLLFSATMPKEIASITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  Y+     I+FC TR         L +  +   +L GELSQ +R   +Q  R    +
Sbjct: 235 RLADYYPNIYGIIFCRTRKETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L    E+  HR GRTGRAG+ G+++ +     + + 
Sbjct: 295 LLVATDVAARGLDVDDLTHVINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAK 410
             + R  N        P+ E I E+    ++     ++ ++ +E+++  ++      L  
Sbjct: 355 REIERIINKKFDKGKMPTGEQICEKQLFNLVDQ---IEKVKVNEEEIASLMPSIYRKLEW 411

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D E I    + +    +    +      V          R     GG  +  +G + F 
Sbjct: 412 LDKEDIIKRVVSLEFNRMIDYYKDNDDIEVVD----ESAPRERGKRGGRGEAEEGYTRFF 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LD 528
           ++ G   +     L+ ++       +  IG I ++ + +F EV     + +  ++     
Sbjct: 468 INFGKTDELTPPQLIELV-NKCVPGKVRIGRIDLRDNFSFFEVEEGEANRVMDSMNGFEV 526

Query: 529 KGIQLKYLGGEKPD------------------FRGYKSSGFKSKNSQD 558
            G ++     +                     FR  + SG K ++S+ 
Sbjct: 527 DGRRISVEPAQAKGEGGKGSRGSRGGSRSGNGFRDRRDSGRKGRDSRR 574


>gi|312880591|ref|ZP_07740391.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
 gi|310783882|gb|EFQ24280.1| DEAD/DEAH box helicase domain protein [Aminomonas paucivorans DSM
           12260]
          Length = 561

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 173/569 (30%), Positives = 275/569 (48%), Gaps = 20/569 (3%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAIL--NPDLREKDVLVSAQTGSGKTVAF 54
           M    F+       +  AL  +G+ N   VQ  IL  +  L   D++V A+TGSGKT+AF
Sbjct: 1   MTTPRFDEFSLRPELLRALERKGFENPMPVQVRILEDDTLLDG-DLIVQARTGSGKTLAF 59

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L L   +            P  L ++PTRELA Q  RE +W+  + G+  A  +GG+ +
Sbjct: 60  ALPLLQRMERGE------RTPQVLVLSPTRELAQQTAREFQWVGGEMGIRPASLVGGMDM 113

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R+ R L++GA +VVGTPGR+ DH+R   L    +++++LDE D MLDLGFRD++E I+ 
Sbjct: 114 DRQIRSLRDGAAVVVGTPGRVLDHLRRGTLRPEGIQSLILDEGDHMLDLGFRDELESIMS 173

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +     R  +FSAT+   + TLA+ Y     ++++ ++  +H DI  RA ++    R   
Sbjct: 174 ALGTVERTWLFSATMPEDVVTLARKYLNAPRKISLVTDAARHEDIAQRAYVIPSRRRFEG 233

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L     K A++FC+TR       + L +  F+ +AL G+++Q+ER+NAL+  R GR
Sbjct: 234 LANVLLCEHPKRALLFCATRMETQELAERLGDEGFRAMALHGDMTQRERNNALESFRRGR 293

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+  L  VI   L    E  +HRSGRTGRAG +G +V ++     R
Sbjct: 294 VDLLVATDVAARGLDIDGLSHVIQYGLPGCLETFIHRSGRTGRAGHEGRNVILLTAREAR 353

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + L     + + W PAP    +         +  L     +   ++    LL + D E
Sbjct: 354 QFKSLVSHTALDIEWLPAPDASEVEGISRAEFEKTLLESPEDEEAYREWAQQLLQREDTE 413

Query: 415 KIAAGFLRIHRA----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           ++ AG L         G    E++          R+             R    G+    
Sbjct: 414 ELLAGLLARAFGSQARGYAIREDVEAEMAREQNRRYDPRPTGRGSDRPLRKLLDGAVTMK 473

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL--RRTVKLD 528
            + G +   E   L+  LCR  G+ R+ +G IR++    FVE+S      L  RR     
Sbjct: 474 FAQGRQDGWEVGALLGALCRGLGVRREDVGNIRLRDHCAFVELSPHAAAQLEGRRERLAR 533

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQ 557
           +G+         P  R  +     ++  +
Sbjct: 534 EGLNGAQEADALP-PRPRRDGARPARTRR 561


>gi|120435454|ref|YP_861140.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
 gi|117577604|emb|CAL66073.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 597

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 151/601 (25%), Positives = 273/601 (45%), Gaps = 49/601 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+   +   + +A+ + G+   + VQE  +   L ++ D++  AQTG+GKT AFG  
Sbjct: 1   MNAFQKLGLDADLLKAIEDMGFETPSEVQEKSIPILLEKETDLVSLAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   + A + +        AL ++PTREL +Q+  E++        +  V   GG S+  
Sbjct: 61  LIQKIDANSKK------TQALILSPTRELCLQITNEIKNYSKYKKSLNVVAVYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA I+V TPGR+ D IR +  NIS +   VLDEADEML++GF +DI+ IL  +
Sbjct: 115 QARSIERGAQIIVATPGRMQDMIRRRLANISSIGYCVLDEADEMLNMGFYEDIKTILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+++  +FSAT+   +  +AK +  D + + + S+N+  S++ +   LV   +R +A+ 
Sbjct: 175 PKEKKTWLFSATMPKEVAKIAKKFMTDPIEITVGSKNKGTSNVSHEYYLVNHRNRYDALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPEIFSVIFCRTKRDTQKVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRSRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG++G+S+ +I ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKQGVSMVIISKSEVRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPE 414
             + +        +  P  + I +     +  D    +           ++  L     E
Sbjct: 355 RTVEKIIQQKFEEKTIPDGKEICKTQLFHLANDIKKTEINHDIDPYLPTINEALEDFTKE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++   F  +         E  P               + +  GG     +G++ + +++G
Sbjct: 415 ELIKKFFSVEFTRFFNYYEKAPDL-------------SAESVGGRPPVSEGNTRYFINIG 461

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----DKG 530
           SK   +   L   L     + R  +  + V+   +F        DL+ +T        + 
Sbjct: 462 SKDGFDWMSLKDFLKEQLDLGRDDVFKVDVKASFSFFNTDEQHTDLILKTFSEFNHNGRF 521

Query: 531 IQLKYLGGEKP--------------------DFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
           + ++    +K                      +   K   F  K   D    +    KG+
Sbjct: 522 VNVEVTKDQKSERGGGRRKERGGGGGRRNSKSYDDNKGGKFSGKRRSDRNNDKKGPRKGS 581

Query: 571 S 571
            
Sbjct: 582 R 582


>gi|150025863|ref|YP_001296689.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772404|emb|CAL43884.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 644

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 148/562 (26%), Positives = 267/562 (47%), Gaps = 16/562 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE +   + +  A+ + G+ N T VQE  +   L +  D++  AQTG+GKT AFG  
Sbjct: 1   MNKFEQLGLTESLLRAIIDLGFENPTEVQEKAIPMLLEKDIDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   + A N          AL ++PTREL +Q+  EL+        +  V   GG S+  
Sbjct: 61  VIQKIDANNRN------TQALILSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RD++ GA I+V TPGR+ D I  + ++IS +   +LDEADEML++GF +DI  IL ++
Sbjct: 115 QARDIKRGAQIIVATPGRMQDMINRRLVDISQINYCILDEADEMLNMGFYEDIVNILSTT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P ++   +FSAT+   +  + K +  D + + + ++N   + + +   LV   DR  A+ 
Sbjct: 175 PDEKNTWLFSATMPAEVARIGKQFMTDPIEITVGAKNSGSATVSHEYYLVNARDRYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLVEDGYSAAALHGDLSQAQRDGVMKAFRGRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ ++  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSEIRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + R        +  PS   I E     +   ++D      I  +    ++ +L     
Sbjct: 355 SSIERIIKQKFEEKVIPSGIEICEIQLLHLANKIKDTEVDHEID-NYLPAINSVLEDLSK 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E++    + +      A  +     + +         R  + G    +N  G++ + +++
Sbjct: 414 EELIKKMVSVEFNRFIAYYKKN-RDIANQSSGSDRRERDDRDGAPRENNNNGATRYFVNI 472

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           GS+   +   L   L  +  + R  +  + V+   +F    A+  D + + +     +  
Sbjct: 473 GSRDDFDWMQLKDFLKETLDLGRDDVFKVDVKEGFSFFNTDAEHTDKVMQVLN-GFDLNG 531

Query: 534 KYLGGEKPDFRGYKSSGFKSKN 555
           + +  E     G  SSG +  N
Sbjct: 532 RRINVEISKNDGGSSSGRRDHN 553


>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
 gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
          Length = 591

 Score =  257 bits (655), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 140/528 (26%), Positives = 245/528 (46%), Gaps = 19/528 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE +     +  A+ + G+   + VQE  +   L E+ D++  AQTG+GKT AFG  
Sbjct: 1   MTKFEELGLQDSLLRAIQDMGFETPSEVQEKAIPILLNEETDIVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A+      +     L ++PTREL +Q+  EL+       + V    GG S+  +
Sbjct: 61  LIQKINAD------SRTTQGLILSPTRELCLQITNELKNYSKYENINVVAIYGGASITDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R ++ GA IVV TPGR+ D I  + ++IS ++  VLDEADEML++GF +DI  IL  +P
Sbjct: 115 ARQVKKGAQIVVATPGRMQDMINRRMVDISKIEYCVLDEADEMLNMGFYEDITSILSHTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             +   +FSAT+   + T+AK +      + + S N     + +    V+  DR  A+  
Sbjct: 175 DDKSTWLFSATMPREVATIAKKFMHTPQEITVGSRNSGSDSVRHEFYAVSGRDRYLALKR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +   +    ++VFC T+       + L E  +   A+ G+LSQ +R   ++  R  + ++
Sbjct: 235 LADANPDIFSVVFCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQM 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ +
Sbjct: 295 LVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSEMRKIK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEK 415
            + R+       +P P+   I +     +       ++     D    +  +      E+
Sbjct: 355 SIERKIQKKFEQKPIPTGIEICQVQLFHLANKIHNTEANDEIEDYLPAIMEIFEDTSKEE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +    + +           T        +     SR          + + S+ + ++VGS
Sbjct: 415 LIKRMVSVEFNRFFNYYSKTRDLNQPKGNNEDRGSRG--------KSNEHSTRYFINVGS 466

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
           K   +   L   L  +  + R  +  + V+   +F     D  + +  
Sbjct: 467 KDGYDWMRLKDFLKETLSLGRDDVYKVDVKESFSFFNTDNDKKEQVLA 514


>gi|197294292|ref|YP_001798833.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
 gi|171853619|emb|CAM11490.1| DEAD/DEAH box helicase-like [Candidatus Phytoplasma australiense]
          Length = 564

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 158/542 (29%), Positives = 268/542 (49%), Gaps = 35/542 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE +P  +   +AL E  ++  T +Q  ++   ++  DV+  AQTG+GKT AFG+ +  
Sbjct: 4   LFEQLPILEQTKKALQELNFIEATPIQALVIPEIIQGHDVIGQAQTGTGKTFAFGIPIIE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +  +       S   +L + PTREL +QV  EL+ L        +AV  GG S  ++ R
Sbjct: 64  KIDYK------LSKTQSLILCPTRELTLQVYEELKKLLRYYPQIRIAVVFGGESYTKQFR 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  H+++ TPGR+ DHI    +++S LK + LDEADEML +GF++ +E IL   P++
Sbjct: 118 ALESKPHLIIATPGRVIDHIERGKIDLSALKILTLDEADEMLKMGFQEALETILKQIPEE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ P+I  +A  YQK+   + +  +    + I+    LV   D++  +V +L
Sbjct: 178 RQTVLFSATLPPSIKQIASKYQKNTKILQVPVKKLAVNAIEQYYFLVKEFDKNKLLVRLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F +T+  V   T  L +  F   A+ G+L Q +R   +   R G+ ++ I
Sbjct: 238 DLKRDYSTILFANTKKDVDEITSFLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+++V++ +L    E  +HR GRTGRAG+KG++   I      + ++L
Sbjct: 298 ATDVAARGIDISDIKMVVNYDLPHEDEVYVHRIGRTGRAGKKGLAYSFISPRKFSQLKKL 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  V +   PSVE I+++  +   Q   D +  +S +     M++ LL K   E+I
Sbjct: 358 EYYLKEKVKFLEIPSVEEIKKQILENFEQKVIDIIEKNSQENANNPMIEKLLQKFSSEQI 417

Query: 417 AAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR--------------- 460
             G L  I        + I P    + R+ F ++S   +  G  R               
Sbjct: 418 IQGLLTNIQPKAKNYTDIIPPRMTFTPRETFNNNSFGNRRFGEKRFQNPKFSSYNSYNSY 477

Query: 461 -------DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                           ++++G K       L+ +L     I  ++IG I+     T  E+
Sbjct: 478 NSYNSYSQKRNDFIEATINLGKKDNINPTVLIRLLKDEYQIYGKNIGNIKHLTHETIFEI 537

Query: 514 SA 515
            +
Sbjct: 538 PS 539


>gi|163789144|ref|ZP_02183587.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
 gi|159875557|gb|EDP69618.1| putative RNA helicase dead-box protein [Flavobacteriales bacterium
           ALC-1]
          Length = 638

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 152/605 (25%), Positives = 269/605 (44%), Gaps = 44/605 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  F+ +   + +  A+++ G+   + VQE  +   L E KD++  AQTG+GKT AFG  
Sbjct: 1   MSTFQELGLNEDLLNAITDLGFEKPSEVQEKAIPLLLEEDKDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           +   +  +      +     L ++PTREL +Q+  EL+       G+ V    GG S+  
Sbjct: 61  MLQKIDID------SRTTQGLILSPTRELCLQITNELKQYGKYCKGLNVTAIYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA I+V TPGR+ D I  K ++IS ++  VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARSVKRGAQIIVATPGRMKDMISRKLVDISKIQYSVLDEADEMLNMGFYEDITDILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  +   +FSAT+   ++T+AK +  D   + + + N   +++ +   LV   DR  A+ 
Sbjct: 175 PDDKSTWLFSATMPKEVSTIAKKFMYDPTEITVGNRNESTNNVSHEYYLVNARDRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + +
Sbjct: 235 RLSDANPDIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKSFRNKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVSKSETRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPE 414
           + + R        +  PS   I E     +       ++    +K    ++ L    D +
Sbjct: 355 KSIERIIKKQFEQKEIPSGMEICEVQLMSLANKIHNTEANDEIDKYIASINELFVDTDKD 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++   F  +  +      + +    VS      D   + + GG         + + ++VG
Sbjct: 415 ELIKKFFSVEFSRFFNYYQKSKDLTVS------DSRGSDRDGGRDYGKSSNDTRYFINVG 468

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF------------------------ 510
            K   +   L   L     + R  +  + V+   +F                        
Sbjct: 469 RKDGFDWMKLKDFLKEQLELGRDDVFKVDVKESFSFFNTENEIKEKVLAFFTDFKHEGRF 528

Query: 511 --VEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
             VEVS +            +G             R         + S D   +R    +
Sbjct: 529 VNVEVSENRGRSGGGRRDRGRGRGRDDRRSGGGRNRRRDDKPRGDRRSSDRGERRSSDSR 588

Query: 569 GASKN 573
           G  ++
Sbjct: 589 GDRRS 593


>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
 gi|167668507|gb|EDS12637.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
           17241]
          Length = 572

 Score =  256 bits (653), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 160/577 (27%), Positives = 272/577 (47%), Gaps = 34/577 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + +A+S+  Y   T +Q   +   ++  DV+  + TG+GKT AFG+     
Sbjct: 6   FEDIGLSPELVQAVSDMNYTQATGIQAQAIPLLMQGADVIGRSSTGTGKTAAFGIPAVER 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +       S   AP  L ++PTRELA+Q+  E+         V    + G +    +   
Sbjct: 66  IE------SGLKAPQVLVLSPTRELAMQIADEMRKFAKYKPGVCVAAVYGGAPMDAQIRA 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              A+IV+GTPGR+ DH+R   L +  L+ VVLDEADEML++GF DDI+ IL  +P  R+
Sbjct: 120 LRAANIVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEMLNMGFLDDIQTILAETPDTRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+ PAI  +   +  D   V+I +  R  + ++     V  + + +A+  +L+Y
Sbjct: 180 TVLFSATMPPAILKITDKFLHDPQTVDIRTGQRTIAAVEQFFYRVPQARKMDALNLLLQY 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  K A+VFC+T+A V   T+ L++H F+ + + G++ Q  R+  +Q  RDG+ R+ +AT
Sbjct: 240 HDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDMKQAGRTQVMQSFRDGKTRILVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLF 360
           DVAARGID+ ++E V + ++    E+ +HR GRTGRAGR GMS  ++          +L 
Sbjct: 300 DVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAGRTGMSHTLVCGARQVDTIRQLR 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKH--DPEKI 416
           R  N  +   P P  + I  +  ++               K  + +D + A+   D   I
Sbjct: 360 RFINADIREAPLPIGDEIVRKKREKFAARVARTLEADEYGKWGEQLDAIAAERGCDMRDI 419

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A    ++  A       +  +    G    R   R                      G  
Sbjct: 420 ACALAQMIAARDKKLIPVLKI-PAPGERPVRGGRR---------------VVLRADAGRA 463

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY- 535
           Q       +  +  +SG+  ++IG I +  D + +E+  +    +   ++  +   L+  
Sbjct: 464 QNVTPANFVAAIADASGLPARAIGKIDIFEDSSLIELYENDALTVLEAMRSTRIRGLEVH 523

Query: 536 --LGGEKPDF--RGYKSSGFKSKNSQDGATKRFKRFK 568
             L  EKP +  RG  + G +    +   ++R  R  
Sbjct: 524 FALTSEKPRYAARGGVTCGREKPFFRPKPSQRRDRAS 560


>gi|149372587|ref|ZP_01891699.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
 gi|149354630|gb|EDM43194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [unidentified eubacterium SCB49]
          Length = 626

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 140/533 (26%), Positives = 254/533 (47%), Gaps = 28/533 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+   +   + +A+++ G+   + VQE  +   L E  D++  AQTG+GKT AFG  
Sbjct: 1   MSAFKALGLNDELLQAITDMGFETPSEVQEQAIPILLEEDTDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +         +     L ++PTREL +Q+  E++        +  V   GG S+  
Sbjct: 61  MLQKIDVA------SRTTQGLILSPTRELCMQITNEMKSYGKHMKGLNVVAIYGGASISD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA I+V TPGR+ D I  + ++IS ++  VLDEADEML++GF +DI  IL  S
Sbjct: 115 QARQIKKGAQIIVATPGRMKDMISRRMIDISKIEYCVLDEADEMLNMGFHEDITEILSHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   + ++AK +      + + S+N    ++ +   LV   DR  A+ 
Sbjct: 175 PQEKSTWLFSATMPREVASIAKEFMYQPQEITVGSKNTGSENVTHEYYLVNARDRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+    +  + L +  +   A+ G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPEIFSVVFCRTKRDTQKVAEQLIQDGYSAGAIHGDLSQNQRDIVMKQFRSRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ ++  VI+ +L    E   HRSGRTGRAG +G+S+ ++ ++  R+ 
Sbjct: 295 MMVATDVAARGIDVDNITHVINYQLPDEVETYTHRSGRTGRAGNQGISIVIVSKSEVRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + ++       +  PS   I E+    +   ++D    D I+      ++  L     
Sbjct: 355 RSIEKKIQKKFEVKEVPSGMEICEKQLMHLANNIKDTEINDDIEA-YLPAINESLEDFSK 413

Query: 414 EKIAAGFLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           E++   F  +          +   +++  G ++   D               GS+ F L+
Sbjct: 414 EELIKKFFSVEFTRFYNYYNKAKDINVKPGHEKDYRDD-------------TGSTRFFLN 460

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           VG K       L  +L     + +  +  + V+   +F  V     DL+    
Sbjct: 461 VGEKDDFNWMSLKDLLKEVLNLGKDDVYKVDVKDSFSFFNVDEKHKDLVTSVF 513


>gi|238750131|ref|ZP_04611634.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
 gi|238711675|gb|EEQ03890.1| DEAD/DEAH box helicase domain protein [Yersinia rohdei ATCC 43380]
          Length = 619

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 248/545 (45%), Gaps = 47/545 (8%)

Query: 44  AQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103
           AQTGSGKT AFGL L   +           AP  L +APTRELA+QV   L         
Sbjct: 2   AQTGSGKTAAFGLPLLHNIDPA------LKAPQVLVLAPTRELAIQVAEALTSFSKDIKG 55

Query: 104 VVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V  V   GG     + R L+ G  +VVGTPGRL DH++   L +S+LK +VLDEADEML 
Sbjct: 56  VNVVALYGGQRYDVQLRALREGPQVVVGTPGRLLDHLKRGTLKLSNLKGLVLDEADEMLR 115

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF +D+E IL   P + +  +FSAT+  AI  + + + K+   V I S      DI   
Sbjct: 116 MGFIEDVENILAQIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQV 175

Query: 223 AV-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +     ++ A+V  L       AI+F  T+ +     + L    +   AL+G+++Q 
Sbjct: 176 YWKVGGGYRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQA 235

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R   L+ ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR 
Sbjct: 236 LREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 295

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI-LQDPLFLDSIQGDE 400
           G ++  +    +R  + + R   +++     P+ E + ER   +   +    L+S   D 
Sbjct: 296 GRALLFVENRERRLLQNIERTMKLTIPEVELPNAELLSERRLAKFAAKVSQQLESSDLDL 355

Query: 401 KKMVDVLL---AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF----------- 446
            + +   L    + D E +AA  L++ +     P  + P +    +  F           
Sbjct: 356 YRALLTKLQPEEEFDIEALAAALLKMAQG--ERPLILPPEAPRRPQREFNSRDDRSNDRG 413

Query: 447 ------------------RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML 488
                                    +     R +      + + VG     E R ++  +
Sbjct: 414 RDRDRSDSRRDSRPDSRADSRDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAI 473

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
                I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P  R
Sbjct: 474 ANEGDISSRYIGNIKLFASHSTIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHER 533

Query: 545 GYKSS 549
             + +
Sbjct: 534 RERPA 538


>gi|257066575|ref|YP_003152831.1| DEAD/DEAH box helicase domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798455|gb|ACV29110.1| DEAD/DEAH box helicase domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 536

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 162/531 (30%), Positives = 262/531 (49%), Gaps = 18/531 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI   I  A+ + GY   + +QE  +   L   D++  +QTGSGKT AF + + 
Sbjct: 1   MKFNELNIGNEILRAIDDLGYEKPSPIQEESIPHLLEGNDLIGKSQTGSGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRER 118
             + A            AL + PTREL +QV +E+E LY     + +    GG  + R+ 
Sbjct: 61  ENIEANGI-------TQALILCPTRELCIQVSKEIEKLYKYKKEIKILSVYGGSHIVRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGRL D +R K L +  LK VVLDEADEM D+GFRDD++FILD +  
Sbjct: 114 KSLKKGVEIVVGTPGRLMDLMRRKVLKLDQLKTVVLDEADEMFDMGFRDDMKFILDRTNP 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+   FSAT+ P I   +K YQ +   V I S+      ID   + +  S ++ A++ +
Sbjct: 174 NRQTCFFSATMGPEIQEFSKLYQTNPYEVKIKSKEVTVDRIDQYYIKLKESMKEEALMRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H A  AIVFC+T+  V R  + L +  + V  L G+L Q  R   ++  R+   ++ 
Sbjct: 234 LEIHKANLAIVFCNTKRKVDRLVESLTKKNYLVDGLHGDLKQSSRDQVMKKFRNKTIQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+ D+++V + +L    E  +HR GRT RAG+ G+S  +I      R  +
Sbjct: 294 VATDIAARGLDVDDVDIVFNYDLPQLDEYYVHRIGRTARAGKSGLSFSLISGRDNNRLRQ 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAK-HDPE 414
           +      ++   P P++  +  +   R+++D    L  +     EK ++  L+ K +DP 
Sbjct: 354 IENYTKANIKQMPVPTLVQMDRQSDLRLIEDISSKLDKNEDLSREKDILIRLMEKGYDPF 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            I    L+         E++  + L S +        +       +   K  +   ++ G
Sbjct: 414 MICQVLLKDKLDINNNHEKLEGIDLKSEKKSK-----SKSNNKTKKKYDKEMTTLFMNRG 468

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                    ++  L R + + +  IG IR+Q   +F+++         R +
Sbjct: 469 KIDNFTKDKIIKALARMAKVPKDKIGQIRIQKTYSFIDIEKPEAFKAIRAI 519


>gi|218678929|ref|ZP_03526826.1| DEAD/DEAH box helicase domain protein [Rhizobium etli CIAT 894]
          Length = 340

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 124/285 (43%), Positives = 175/285 (61%), Gaps = 13/285 (4%)

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 1   TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 60

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +S  W   PS E + ERD +R+L DP+F ++ Q +E+ +V  LL+ H  EK+AA F
Sbjct: 61  DNAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF 120

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF--KVGGGSRDNFKGSSWFSLSVGSKQK 478
           LR++R    APE++  V++  G  R R D+         G R++F  S WFS+SVG KQ 
Sbjct: 121 LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN 180

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDKGIQLK 534
           AE RWL+PMLCR+  + ++ IGAI++QP+ TFVE++A   +     +     L++GI++ 
Sbjct: 181 AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT 240

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQD-------GATKRFKRFKGASK 572
            L G     R      +  K+S+D          +   +F   S 
Sbjct: 241 KLSGTPDFSRAPSPKSYAGKSSRDERPDDASRGERPKNKFGKGSG 285


>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
 gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
          Length = 571

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 145/573 (25%), Positives = 273/573 (47%), Gaps = 46/573 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M +F   N+   I +A+ E G+ + T +Q+  +     + +D++  AQTG+GKT AF L 
Sbjct: 1   MNLFTETNLSPEILKAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHR 116
           +   +   + +         L + PTREL +Q+ ++++               GG S+  
Sbjct: 61  ILDMIDDGSRKI------QFLVLCPTRELCLQITKDIKNYSKYMNNIKTTAVYGGSSITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++   I+VGTPGR+ D I  K L+ S ++ +VLDEADEML +GF+DD+E IL  +
Sbjct: 115 QIRSLRDKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRET 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ +   +FSAT++  +  ++K+Y     R+++ S N    +I +   +V    +  A+ 
Sbjct: 175 PETKHTYLFSATMNKEVERISKSYLTAPHRISVGSINEVKKNIKHEFYVVGYRHKKEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  + +I+FC TR         L ++ +   AL G+LSQ +R   ++  R     
Sbjct: 235 RLIDANPNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNID 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+ 
Sbjct: 295 ILVATDVAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPEK 415
           +++     + +V +  P+ +AI +     + +  LF + ++  +    +   L++   E+
Sbjct: 355 KQIKMSTKIDIVEKKVPTGDAIIKAQVGGVFEK-LFTEHLEFFNFDDALIPDLSEFTKEE 413

Query: 416 IAAGFLRIH-RAGLCAPEEITPVSLVS-----------------------------GRDR 445
           +    L++  R      ++   ++                                 R  
Sbjct: 414 LVHKMLQLQLRELAMFYKDKNDLADQKFNADDRGGDSRRDRDRDRGRDRERGGDRGERRE 473

Query: 446 FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ--SIGAIR 503
           F  D          R N      F  ++G K + +   ++ ++ +S+  +++   IG I 
Sbjct: 474 FSRDGGRESRDRKPRRNNTDMVRFFFNLGKKDQLKKMDMLEIINKSTAKSKKRPDIGDIE 533

Query: 504 VQPDLTFVEVSADGVDLLRRTVKLD--KGIQLK 534
           +    +F EV     D + + ++    KG +++
Sbjct: 534 ILEKFSFFEVEKSFKDEVMKGMQSQKFKGKEMR 566


>gi|305667304|ref|YP_003863591.1| DEAD box family ATP-dependent RNA helicase [Maribacter sp.
           HTCC2170]
 gi|88709351|gb|EAR01584.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Maribacter sp. HTCC2170]
          Length = 603

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 143/584 (24%), Positives = 264/584 (45%), Gaps = 22/584 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  FE   + + +  A+++ G+   + VQE  +   L ++ D++  AQTG+GKT AFG  
Sbjct: 1   MTKFEALGLQESLLNAVADMGFETPSEVQEKAIPILLEDETDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   + +E      +     L ++PTREL +Q+  EL+        +  V   GG S+  
Sbjct: 61  LIQKIDSE------SRTTQGLILSPTRELCLQITNELKLYSKYEKSINVVAIYGGASITE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA IVV TPGR+ D I    +NI+ +   +LDEADEML++GF +DI+ IL ++
Sbjct: 115 QARQIKRGAQIVVATPGRMKDMISRGLVNITKIDYCILDEADEMLNMGFFEDIKDILSNT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P ++   +FSAT+   ++ +AK +      + +  +N   + + +   +V   DR  A+ 
Sbjct: 175 PDEKSTWLFSATMPREVSVIAKKFMHSPKEITVGDKNSGATTVQHEYYVVGGRDRYPALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+    R  + L E  +   AL G+LSQ +R   +   R  + +
Sbjct: 235 RLADTNPDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSEMRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           + +  +     + +  P+   I E     +   ++D    + ++     + DV     D 
Sbjct: 355 KAIENKIKQKFISKKIPTGMEICEIQLYHLANKIKDTEIHEEVENFLPAINDVFQG-IDR 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    + +                        +                GS  + ++V
Sbjct: 414 EDLIKKIVSVEFTRFYDYYNKKRDLNTVDSGDRGERRGDRGGNAP----TSGSVRYFVNV 469

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV----KLDK 529
           G K   +   L   +  + G+ ++ +  + V+   +F    AD  + +  T        +
Sbjct: 470 GEKDGYDWMSLKDFIRDTVGLGKEDVFKVDVKDSFSFFNTDADATEKILSTFTDFKVDGR 529

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            + ++            +    +S   +    +R    KG  +N
Sbjct: 530 FVNVEVSKNPGGGGGRGRRDRSRSGGGRKDRDRRSSSGKGRDRN 573


>gi|294101359|ref|YP_003553217.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
 gi|293616339|gb|ADE56493.1| DEAD/DEAH box helicase domain protein [Aminobacterium colombiense
           DSM 12261]
          Length = 555

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 177/559 (31%), Positives = 286/559 (51%), Gaps = 16/559 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   + +AL+E+G+   T VQ+ +L+  + EKD++V A+TGSGKT+AF L L   
Sbjct: 6   FEQYELRAELLKALAEKGFSTPTPVQDRVLSEKIFEKDIIVRAKTGSGKTLAFLLPLLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A             L ++PTREL+ Q+ +E +W      V  A  +GG+ + ++ R L
Sbjct: 66  ITAGERESK------VLILSPTRELSQQIWKEAKWFGNYINVSAASLVGGMDMSQQIRSL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G+ +V GTPGR+ DHIR   L+ S +K VVLDE D MLDLGF++++E ILDS P  +R
Sbjct: 120 RDGSAVVTGTPGRVLDHIRRGTLDTSGIKIVVLDEGDHMLDLGFKEELEAILDSLPNCQR 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT+   I  LAK Y K  V +++  E   H DI +   LV    ++  ++N+L +
Sbjct: 180 VWLFSATMPAEIKNLAKRYLKTPVFISLTEEGEAHEDITHEVYLVPTRHKEEGLINVLLW 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVFC TRA     T+ L +  FQ + L GE+SQ+ER+ AL   R GR  + +AT
Sbjct: 240 EKPSRAIVFCHTRAETVELTRRLHDENFQAMCLHGEMSQRERNMALSQFRSGRTPLLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+  +  VI   L  N E  +HRSGRTGRAG +G ++ V+        + + +
Sbjct: 300 NVAARGLDVEGVSHVIQMGLPDNRETFVHRSGRTGRAGHEGRNLLVLSPKEATGFKSMVK 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIAAGF 420
            + + + W+  P  + IR++      +     +  +  E  +  D LL  ++   + A  
Sbjct: 360 TSTIPITWKNVPDPKDIRKKQRISYEERVFAAEHYETPENLEWADSLLECNESRAMIARL 419

Query: 421 LRIHRAGLCAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           L +  +   A  E+T  +     R R    SR+ + G          +   +  G  Q  
Sbjct: 420 LGLLFSRKNAGYELTADLEQDLKRGRTPRRSRSKESGSAGSSL---QTTIRIERGRDQGW 476

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS---ADGVDLLRRTVKLDKGIQLKYL 536
           +   ++ ++C +  I++  +GAIR+Q D   VE+        +     +     I     
Sbjct: 477 DVGKILRVICSTLNIDKSGVGAIRLQNDHAQVELLPSIEKDFERFGHRLIERGLITEGRK 536

Query: 537 GGEKPDFRGYKSSGFKSKN 555
             +  + RG K    + K 
Sbjct: 537 SYKAVEKRGKKPFRQRKKR 555


>gi|261749520|ref|YP_003257206.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497613|gb|ACX84063.1| ATP-dependent RNA helicase [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 542

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 258/523 (49%), Gaps = 15/523 (2%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGL 56
           MK F++   +   I +AL + G    T +Q+ ++   L+  KD++  AQTG+GKT AFGL
Sbjct: 1   MKTFKDYNFLNDKIIQALEDLGIKTPTPIQKKVIPYLLKSGKDLIALAQTGTGKTAAFGL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
            +   +  E         P AL + PTREL +Q+ R+L  +    + + +    GGVS+ 
Sbjct: 61  PIIQKINLE------FRFPQALILCPTRELCIQITRDLSRFSRYISLIKIIPLYGGVSIE 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   LQ   HI+VGTPGR+ D I  K L++S +K +VLDEADEML++GF+++++ I+  
Sbjct: 115 NQILSLQKRTHIIVGTPGRIIDLIERKKLHLSDIKYLVLDEADEMLNMGFKEELDSIIIK 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PKKR+ L+FSAT+S  +  +A +Y  D + +     N    D+ +   +V+  ++  A+
Sbjct: 175 LPKKRQSLLFSATMSKYMNGIAHDYLIDPIEIITGKRNFASDDVRHIYYIVSNQNKYLAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+  +     I+FC TR       + L +  +   AL G+LSQ +R + +   R+   
Sbjct: 235 KRIVDINPDIYGIIFCKTRKETREIAESLIQDGYNADALYGDLSQSQRESVMNRFRNRIL 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+ D+  VI+  +    E  +HRSGRTGRAG  G+SV +I     R 
Sbjct: 295 QFLVATDIAARGIDVNDVTHVINYNIPDESEIYVHRSGRTGRAGNTGISVCIIHSRETRN 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL---DSIQGDEKKMVDVLLAKHD 412
                ++   S      PS E + E+     ++    +   +         +   L   D
Sbjct: 355 LREFEKKIGKSFERIMIPSGEEVCEKKLFHFIEKVKKIVVDEQSMKTFLPEIQKRLEVFD 414

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            E++   F  I      +  +    +L +    ++ +  A K     R   +  S   L+
Sbjct: 415 REELIKRFSWIEFNRFFSYYK-NSKNLNNSIFSYKKNYSAKKKFLSKRVKKESFSKLFLN 473

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           +G K       L+ ++ ++   +R +IG I +  + +  EV  
Sbjct: 474 IGYKDNLTKLGLINLINQAVNNSRINIGNIEILSNFSLFEVEK 516


>gi|228471344|ref|ZP_04056145.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228306845|gb|EEK15958.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 553

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/544 (28%), Positives = 267/544 (49%), Gaps = 23/544 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            F+  ++   +  A ++ G+     VQ+ ++      + D++  ++TGSGKT A+GL L 
Sbjct: 2   TFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             ++      +  SAP  L + PTRELA+QV  +L  L   T V   +   GG S+  + 
Sbjct: 62  ERIIQ-----AKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HI+V TPGRLCD IR K + +  +  VVLDEAD MLD+GF+ D++ IL + P+
Sbjct: 117 RQLAKGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +    +FSAT+S  +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  +
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRV 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + Y+     I+FC TRA      + L    +   AL G+LSQ +R   +   R    ++ 
Sbjct: 237 VDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   
Sbjct: 297 VATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRI 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAKHDP 413
           + + A + +   P PS + I ++    +     + DS +      +    +   LA   P
Sbjct: 357 IEQHAGIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAIVQKLAWLPP 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           E+I    L +    +      TP              R +   +         SR +   
Sbjct: 417 EEIIRRVLTLEADRIMRYYANTPDLSAQELATEEPKYRTKGSPEEHRKAPKKRSRTDLPP 476

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G + K     L+ ++ R+    + +IG I + P  ++ EV+++  + +   +
Sbjct: 477 MTSLRINLGKRDKLYPNRLLELINRTLP-YKITIGKIDLSPSYSYFEVASEWAETVAAAL 535

Query: 526 KLDK 529
             ++
Sbjct: 536 SEEE 539


>gi|146300157|ref|YP_001194748.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154575|gb|ABQ05429.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 634

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 149/606 (24%), Positives = 273/606 (45%), Gaps = 44/606 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M  FE +   + + +A+ + G+ N + VQE  +   L ++ D++  AQTG+GKT AFG  
Sbjct: 1   MNKFEQLGLNESLLKAILDLGFENPSEVQEKAIPLLLEKDTDMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   + A+N          AL ++PTREL +Q+  EL+        +  V   GG S+  
Sbjct: 61  LIQKIDADNRN------TQALVLSPTRELCLQITNELKNYSKYEKGINVVAVYGGASITE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+++ GA I+V TPGR+ D I    +NI ++   +LDEADEML++GF +DI  IL  +
Sbjct: 115 QAREIKRGAQIIVATPGRMQDMINRGLVNIKNIDYCILDEADEMLNMGFYEDIVSILSDT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P ++   +FSAT+   +  +AK +  + V + + ++N   + + +   LV   DR  A+ 
Sbjct: 175 PDQKNTWLFSATMPQEVARIAKQFMSEPVEITVGAKNSGSATVSHEFYLVNARDRYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYSAAALHGDLSQAQRDGVMKSFRGRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ ++  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDNVTHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIVTKSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPE 414
             + R        +  PS   I E     +       +      +    ++ +L     E
Sbjct: 355 SSIERIIKQKFEEKAIPSGIEICEIQLLHLANKIKDTEVDHEIDNYLPAINNVLEDLSKE 414

Query: 415 KIAAGFLRIHRAGL-CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           ++    + +         ++   +S  S  +R        +       N  G+  + +++
Sbjct: 415 ELIKKMVSVEFNRFITYYKKNRDISTQSSGERRERGDSEPREF-----NNNGAVRYFVNI 469

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDK 529
           GS+   +   L   L  +  + R  +  + V+   +F     +  D +   +       +
Sbjct: 470 GSRDNFDWMSLKDYLKETLDLGRDDVFKVDVKEGFSFFNTDPEHTDKVMDILNNVQLEGR 529

Query: 530 GIQL---KYLGGEKPD-------------------FRGYKSSGFKSKNSQDGATKRFKRF 567
            I +   K  GG + D                       + SG   ++ ++ A +R    
Sbjct: 530 RINVEISKNDGGGRRDHNNRGGGRNSGGQRREGNFAPRREGSGGGFRSDRNSAPRREGSG 589

Query: 568 KGASKN 573
            G   +
Sbjct: 590 GGFRSD 595


>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 685

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 156/552 (28%), Positives = 262/552 (47%), Gaps = 43/552 (7%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            + +++   G+   T +Q++ +   L+ E D +  AQTG+GKT AFGL L   +      
Sbjct: 11  EVLQSIEALGFAEPTPIQQSAIPHLLQLESDFVGLAQTGTGKTAAFGLPLIHKV------ 64

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHI 127
               +    L IAPTREL +Q+ ++LE        +  V   GG  + ++  D++ GA +
Sbjct: 65  TDRPTETQGLVIAPTRELCLQISKDLEAFAKFDQQIKVVAVYGGTDIRKQITDIKRGATV 124

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV TPGRL D I  K +N+  ++ VVLDEADEML++GF++DI+ IL ++P  + + +FSA
Sbjct: 125 VVATPGRLVDLINRKAINLKTVETVVLDEADEMLNMGFKEDIDAILSATPDTKSVWLFSA 184

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  +AKNY  D + V +  +N+ + +I++    V   DR +A+  ++        
Sbjct: 185 TMPKEVAAIAKNYMTDPLEVAMGHKNQSNENIEHIYYTVKERDRYDALKRLIDASPDIFG 244

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC TR   +   + LA+  +    L G+LSQ  R   +   R+   ++ +ATDVAARG
Sbjct: 245 LVFCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLVATDVAARG 304

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ ++  VI+  L  + EN  HRSGRT RAG++G S+ +I      + + + R+   + 
Sbjct: 305 IDVDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRENFKIKAIERQIRTTF 364

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK-----IAAG 419
                P    I      +++     ++  + D       +     +   E+     I+A 
Sbjct: 365 KAALIPEASEICGIQLNKLISKVKEIEVKENDIAPFLPAIMADFEELSKEEVIKKFISAE 424

Query: 420 FLRIHRAGLCAPE--------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK------- 464
           F R       A +        +       +G DRF    R  +   G R +         
Sbjct: 425 FNRFIEYYDRAGDLNVSAGRGDREDRKDRAGNDRFDRKDRFERSDRGERSDRGERTERAP 484

Query: 465 -------GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
                    + F +S+G +       L+ ++C S+G+N  SIG I V P+ +F E     
Sbjct: 485 RADRDDANRTRFFVSLGKRDGLNPGGLLRVICDSTGLNSGSIGRIDVMPNFSFFE----- 539

Query: 518 VDLLRRTVKLDK 529
            D    +  L K
Sbjct: 540 ADKTDESAILSK 551


>gi|302341870|ref|YP_003806399.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638483|gb|ADK83805.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 573

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 158/541 (29%), Positives = 256/541 (47%), Gaps = 31/541 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++  A++E+G+ + T +Q A++   L  +DV+  AQTG+GKT AFGL L   +    
Sbjct: 23  LSPLLTAAVTEQGFTSPTPIQTAMIPLMLEGRDVIGQAQTGTGKTAAFGLPLLHNI---- 78

Query: 67  DRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              SP      AL +APTRELA+QV   L+    K G  V    GG     +   L+ G 
Sbjct: 79  ---SPGVGQAQALVLAPTRELAIQVAEALQGYGRKMGARVMAVYGGAPYGLQISRLRKGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ D I  K L +  ++ VV+DEADEML +GF  DI+ IL+++P +R+  +F
Sbjct: 136 DVVVGTPGRVLDLIGQKALRLDMVETVVIDEADEMLSMGFIADIQAILEATPSQRQTALF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  ++++Y  +   V+++        ++ R  L+   D+  A+  +L      
Sbjct: 196 SATLPPAIRQMSQSYMVEPQSVSVSPRQLTVEAVEQRYYLLDERDKLAALCRLLEVEPVA 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++FC T+A   +    L+   F   A++G+LSQ+ R   L   R+ + ++ +ATDVAA
Sbjct: 256 SALIFCRTKAGTGQLADELSARGFAAEAINGDLSQEARIRVLGRFRNNQLKLLVATDVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  VI+ +   +PE  +HR GRTGRAGR G+++ ++    +    R+   A  
Sbjct: 316 RGLDIDDISHVINFDPPQDPEVYVHRIGRTGRAGRDGVAISLLSPKDRWLLARIEAYAKA 375

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDPEKIAAGFLR 422
            +     P+ E I      R+L+  + L    G  ++      +    HD   IAA  L+
Sbjct: 376 RLSHCTLPTPEEIMAHREGRLLERMVALLDDGGFAREKGLAAKLEAQGHDLADIAAAALK 435

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV--------------------GGGSRDN 462
           + R                 R          +                     G  +   
Sbjct: 436 LARGQEKTRTIDPVAEYSLTRPPRGRQPYPARDQRRGDSRRFDDRRQDDHRRVGETTAQP 495

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
             G     L +G      A  ++  L   + I  + IG IR+Q   T V+VS   V  + 
Sbjct: 496 ESGMVRLCLGMGRADGINAGHVLGSLSHHAEIPGRCIGKIRIQDTRTLVDVSEQVVGRVL 555

Query: 523 R 523
            
Sbjct: 556 A 556


>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
 gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
          Length = 618

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 163/616 (26%), Positives = 263/616 (42%), Gaps = 68/616 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  ++ +A+  +G+   T +Q   +   L  + +++  A+TG+GKT AFGL L   L A+
Sbjct: 10  LEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPLIQELRAD 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL + PTRELA+QV  E+E    +T   +AV  GG S+  + R L+ GA
Sbjct: 70  ------LGHPRALVLVPTRELAMQVAAEIESFRIETYPRIAVVYGGSSMSEQLRALKKGA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI    L+++ ++  +LDEADEML++GF  DIE I   +    R+LMF
Sbjct: 124 EIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLNMGFISDIETIFSKANSNARILMF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I ++A ++  D   V         S  +     V   D+  A++ ++      
Sbjct: 184 SATMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFVREEDKIEALIRLIDITPDF 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+       K L E  ++  AL G++ Q +R   L   R  + R  +ATDVAA
Sbjct: 244 YGLVFCQTKLDADSVAKELEERGYEAAALHGDIPQNQREKILSRFRSKKIRTLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V++  +  +     HR GRTGRAG  G +V  I  N  R+ + L R A  
Sbjct: 304 RGIDIEGITHVVNYAIPYDGPTYTHRIGRTGRAGSTGTAVSFIRPNESRKIDYLARHARG 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDE------------------------ 400
                  PS+E +      RIL +    L  ++ D+                        
Sbjct: 364 EFKEGKIPSIEKVLAYKETRILSELAEKLAKLETDDFNESFIRFSEKLLAGTAEKSENDV 423

Query: 401 --------KKMVDVLLAKHDPEK------------IAAGFLRIHRAGLCAPEEITPVSLV 440
                   +++ D+  ++HD EK            I AG L++      +P     +  V
Sbjct: 424 SLADENISEEITDMQNSEHDFEKRYNDKTEKQIIQILAGLLQLQFGAQLSPSRYKNIKPV 483

Query: 441 SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
                        +  GG +          L++G K+    R +  +      I    + 
Sbjct: 484 -------------RFDGGKKQKDSDQCRLYLALGRKEGMTKRKISQLFSSLLSIPEHKVD 530

Query: 501 AIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL---GGEKPDFRGYKSSGFKSKNSQ 557
            I V    + V +            K  K + L+       E+  F   K SG K +  +
Sbjct: 531 RIEVMEKFSLVSLPRQAAATALSLAKKRKDLPLRLDKKESEERESFPARKKSGRKQREER 590

Query: 558 DGATKRFKRFKGASKN 573
              T   ++     ++
Sbjct: 591 RMETFVKEKTAKKKRS 606


>gi|319937469|ref|ZP_08011874.1| helicase [Coprobacillus sp. 29_1]
 gi|319807309|gb|EFW03918.1| helicase [Coprobacillus sp. 29_1]
          Length = 520

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 147/517 (28%), Positives = 255/517 (49%), Gaps = 37/517 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + + +   GYV+ + +QE  +   L  +D++  AQTG+GKT+AFG  L S
Sbjct: 5   TFKDLGLSSDVLKGIEMMGYVSPSPIQEKSIPVLLEGQDIIGQAQTGTGKTLAFGSVLLS 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E           AL ++PTRELA+Q+  EL+ +   T + +    GG  + R+ +D
Sbjct: 65  KIQKEGKHVK------ALILSPTRELALQIHEELKRIGKCTNLSIVSVFGGSDIERQIKD 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVVGTPGR+ D +R + L I+++  +VLDEADEML++GF +DIE IL ++P  +
Sbjct: 119 LKRGADIVVGTPGRVQDLMRRRVLKINNIDFMVLDEADEMLNMGFVEDIETILKATPDNK 178

Query: 181 RMLMFSATISPAITTL-AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT+   I  + +   Q D + + I S+ +  S +         +++   +  IL
Sbjct: 179 QTVLFSATMPATIKKIASNYMQDDYMHIQIKSKTKTASTVSQYYFETRPTNKFETLCRIL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +N I+FC T+ SV      + +  + V A+ G+LSQ +R+N L+  + G  +  +
Sbjct: 239 DSRQMENTIIFCKTKRSVDEVVASMQQKHYDVEAMHGDLSQNQRTNTLKRFKSGHIQYLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ E+  + E  +HR GRTGRA +KG +  ++    +     +
Sbjct: 299 ATDVAARGIDVDNISHVINYEMPQDEELYIHRIGRTGRANKKGEAYSLVTNREKNFLMSI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDPE-KI 416
            +  N  +     PS + I ++  + +L D    + +    K +    +    HD    +
Sbjct: 359 QKRTNSHIEKLDVPSNQEIFDQKIKELLFD--VQEEMLKSHKDVFMDTIKDIPHDMRTDV 416

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A  L +        +     S  S  DR                         ++ GS 
Sbjct: 417 MATLLSMCYQQRVGFDYQEETSAGSQYDR-----------------------VFMTCGSM 453

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +   + ++  L +   I    IG I ++   TFV++
Sbjct: 454 DRINVKDVIEFLTKYGKIKSSDIGDITIKRKFTFVDI 490


>gi|332300603|ref|YP_004442524.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177666|gb|AEE13356.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 553

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 154/544 (28%), Positives = 265/544 (48%), Gaps = 23/544 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            F+  ++   +  A S+ G+     VQ+ ++      + D++  ++TGSGKT A+GL L 
Sbjct: 2   TFDTLDLSPELLRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             ++      +  SAP  L + PTRELA+QV  +L  L   T V   +   GG S+  + 
Sbjct: 62  ERIIQ-----AKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HI+V TPGRLCD +R K + +  +  VVLDEAD MLD+GF+ D++ IL + P+
Sbjct: 117 RQLAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +    +FSAT+S  +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  +
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRV 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + Y+     I+FC TRA      + L    +   AL G+LSQ +R   +   R    ++ 
Sbjct: 237 VDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   
Sbjct: 297 VATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRI 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAKHDP 413
           + R A + +   P PS + I ++    +     + DS +      +    +   LA   P
Sbjct: 357 IERHAGIRIEAMPLPSGQEICKKQLFALATKIEYADSNEHGTQYDELLNAIVQKLAWLPP 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPV--------SLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           E+I    L +    +      TP              R +   +         SR +   
Sbjct: 417 EEIIRRVLTLEADRIMRYYANTPDLSAQELATEEPKYRTKNTPEEHRKSPKKRSRTDLPP 476

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G + K     L+ ++ R+      +IG I +    ++ EV+++  + +   +
Sbjct: 477 MTSLRINLGKRDKLYPNRLLELINRTLPYQ-ITIGKIDLSLSYSYFEVASEWAETVAAAL 535

Query: 526 KLDK 529
             ++
Sbjct: 536 SEEE 539


>gi|260910887|ref|ZP_05917530.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634995|gb|EEX53042.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 611

 Score =  251 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 147/576 (25%), Positives = 249/576 (43%), Gaps = 34/576 (5%)

Query: 25  SVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
            VQE ++   L    DV+  AQTG+GKT A+G+ +   +  E           AL ++PT
Sbjct: 2   PVQEEVIPYLLGNGNDVIALAQTGTGKTAAYGIPVLQKVNPEE------KHTQALILSPT 55

Query: 84  RELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           REL +Q+  +L         +  V   GG S+  + R L+ GA I+V TPGRL D ++  
Sbjct: 56  RELCLQIADDLADFSKYVQGLHVVPVYGGASIEMQIRQLRKGAQIIVATPGRLIDLMKRG 115

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
              + ++  VVLDEADEML++GF + I  I +  P  R  L+FSAT+S  I  +AKNY  
Sbjct: 116 VAQLDNVNNVVLDEADEMLNMGFTESINAIFEGVPTDRNTLLFSATMSREIEKIAKNYLN 175

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
           D   + + S N     +++   +V   D+  A+  ++ ++    AI+FC T+        
Sbjct: 176 DYKEIVVGSRNEGAEKVNHIYYMVNAKDKYLALKRLVDFYPRIFAIIFCRTKIETQEIAD 235

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L    +   AL G+LSQQ+R   +Q  R+   +  +ATDVAARG+D+ DL  VI+  L 
Sbjct: 236 KLIRDGYNAEALHGDLSQQQRDLTMQKFRNHNVQFLVATDVAARGLDVDDLTHVINYGLP 295

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + E+  HRSGRTGRAG+KG S+ +I    + +   + +      V    P+ + I  + 
Sbjct: 296 DDIESYTHRSGRTGRAGKKGTSISIIHTRERSKVRSIEKIIQKEFVDGTLPTAKEICSKQ 355

Query: 383 AQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEKIAAGFLRIHRAGL-----CAPEEI 434
             + +     +D  + +     + ++      D E +    + +           APE  
Sbjct: 356 LYKAMDAISKVDVNEEEIAPFLEEINRHFEYIDKEDLIKKIVSMTFGRFLDYYANAPEIE 415

Query: 435 TPVSLVSGRDRFR-------------DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            P    + R+  R                R  +   G+R    G     +++G       
Sbjct: 416 KPSQKRNEREGKRAERGGGRDAQRGARGKRTERGTRGARKAEAGYRRLFVNLGKDDGFYP 475

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKYLG 537
             +M  + R+    R ++G I +    +++EV       + +         + ++     
Sbjct: 476 GEVMQFINRNVQ-GRVAVGHIDLLGKFSYIEVPEADASRVMQGLSGATYKGRDVRCNDAD 534

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                       G K +   D A     +    ++ 
Sbjct: 535 EGGHGRSASPKGGRKGQRFSDAAPATGGKRGKKAQR 570


>gi|126663594|ref|ZP_01734591.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
 gi|126624542|gb|EAZ95233.1| putative RNA helicase dead-box protein [Flavobacteria bacterium
           BAL38]
          Length = 642

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 143/606 (23%), Positives = 263/606 (43%), Gaps = 46/606 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M  FE +   + +  A+ + G+ N + VQE  +   L +  D++  AQTG+GKT AFG  
Sbjct: 1   MNKFEQLGLNESLLLAIKDLGFENPSEVQEKAIPVLLEQNTDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   + AEN          AL ++PTREL +Q+  E++        +  V   GG S+  
Sbjct: 61  LIQKIDAENRN------TQALILSPTRELCLQITNEIKLYSKYIKGLHTVAVYGGASITE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+++ GA I+V TPGR+ D I    +NI ++   +LDEADEML++GF +DI  IL  +
Sbjct: 115 QAREVKRGAQIIVATPGRMQDMINRGLVNIKNIDFCILDEADEMLNMGFYEDICSILSDT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P ++   +FSAT+   +  +AK +    V + + S+N   + + +    V   DR  A+ 
Sbjct: 175 PDEKNTWLFSATMPAEVARIAKQFMSSPVEITVGSKNSGSATVSHEYYCVNARDRYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQAQRDGVMKSFRGRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ ++  V++ +L    E   HRSGRTGRAG+ G S+ +I ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDNITHVVNYQLPDEIETYNHRSGRTGRAGKLGTSIVIITKSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + R        +  PS   I E     +   ++D      I  +    ++ +L     
Sbjct: 355 SSIERIIQQKFQEKTIPSGIEICEIQLLHLATKIKDTEVDHEID-NYLPAINEVLDGLSK 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E++    + +         +          +     S   ++  G          + +++
Sbjct: 414 EELIKKMVSVEFNRFINYYKSKRDLSGERGNDRERSSEPREIRAGDP------VRYFINI 467

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDK 529
           G++   +   L   +  +  + R  +  + V+   +F     +  + +   +       +
Sbjct: 468 GARDDFDWMQLKDFIKETLDLGRDDVFKVDVKEGFSFFNTDGEHTEKVMEVLNGYDMNGR 527

Query: 530 GIQLKYLGGEKPDFRG----------------------YKSSGFKSKNSQDGATKRFKRF 567
            I ++    +    R                          S  + +  +D    R +R 
Sbjct: 528 RINVEISKNDGGGRRDHNGRSSGGGFGGGRREGGFNRERSGSSPRREGGRDSGGFRGERS 587

Query: 568 KGASKN 573
             A + 
Sbjct: 588 GSAPRR 593


>gi|269792122|ref|YP_003317026.1| DEAD/DEAH box helicase domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099757|gb|ACZ18744.1| DEAD/DEAH box helicase domain protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 558

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 174/561 (31%), Positives = 282/561 (50%), Gaps = 11/561 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAIL-NPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+  P    +  AL  +G+ +   VQ ++L +P L + D++V A+TGSGKT+AF L L
Sbjct: 5   KRFDQYPLRDELLSALRRKGFEHPMPVQVSMLEDPTLVDGDLIVQAKTGSGKTLAFALPL 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +           +P  L ++PTRELA+Q  RE +WL     + VA  +GG+ + R+ 
Sbjct: 65  LNRMEFGE------RSPKVLVLSPTRELALQTAREFQWLGYDLRIRVASLVGGMDMERQV 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA +VVGTPGR+ DHIR        ++++VLDE D MLDLGF+D++E I+ +  +
Sbjct: 119 KALREGAAVVVGTPGRVLDHIRRGTFRADLVESLVLDEGDHMLDLGFKDELEDIMAAMTQ 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             R  +FSAT+   + TLAK Y     ++++  +  +H DI  RA ++    R   + N+
Sbjct: 179 VERSWLFSATMPEEVVTLAKQYLDAPRKISLVEDAAKHDDIVQRAYIIPARRRFEGLANV 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +   +  IVFC+T+       + L +  F+  AL G+++Q+ER+ AL+ +R GR+++ 
Sbjct: 239 LLFERPRRGIVFCATKLQTQELAERLCDEGFKASALHGDMTQRERNMALENLRRGRSQIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI   L    E  +HRSGRTGRAG++G ++ ++          
Sbjct: 299 VATDVAARGLDISGVSHVIQFGLPGCLETFIHRSGRTGRAGQEGRNLILLTAREAGEFRG 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R  ++ V W PAP  E +       I +  L   +   D     + +L + D + I A
Sbjct: 359 MIRGTSLEVEWLPAPDAEELESLTRAEIERWCLENPAEGEDYMDWAEEILQREDAQLIVA 418

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           G L     G+     I            R D    +     R    GS     S G +  
Sbjct: 419 GLLSRSFEGIPKGYSIQEDVQAEMARSRRADRPKARDQRPLRKLVSGSVTMRFSSGREDG 478

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
            E   L+  LCR  GI R+ +G I+++    FVE+S      + R  + D   +    G 
Sbjct: 479 WEVGPLLGALCRGLGIRREDVGNIKLKDRCAFVELSPYAASQIER--RRDNLAREGLDGF 536

Query: 539 EKPDFRGYKSSGFKSKNSQDG 559
            + + R    +      S++ 
Sbjct: 537 SRSEPRQNHGTQRPRTPSRNR 557


>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
 gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
           gleum ATCC 35910]
          Length = 562

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 146/556 (26%), Positives = 261/556 (46%), Gaps = 33/556 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M +F   N+   I +A+ E GY + T +Q+  +   L + +D++  AQTG+GKT AF L 
Sbjct: 1   MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           +   +   + +         L + PTREL +Q+ ++++        +      GG S+  
Sbjct: 61  ILDMIDDTSRKI------QLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L++   I+VGTPGR+ D I  K L+ S +  +VLDEADEML +GF+D++E IL  +
Sbjct: 115 QMRSLKDKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSET 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ ++  +FSAT++  +  ++KNY     R+++ S N    +I +   +V    +  A+ 
Sbjct: 175 PETKQTFLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  + +I+FC TR         L ++ +   AL G+LSQ +R   ++  R     
Sbjct: 235 RLIDANPNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNID 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  L  VIH  L  +PE  +HRSGRTGRAG+ G+S+ +I     R+ 
Sbjct: 295 ILVATDVAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +++     + +     P+ + I +     + +  L       +    +   L+    E++
Sbjct: 355 KQIKSATKIEIHERTIPTGDDIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSNFTKEEL 414

Query: 417 AAGFLRIHRAGLCAPEEIT-------------------PVSLVSGRDRFRDDSRAFKVGG 457
               L+     L    +                            R R RD  R  + GG
Sbjct: 415 VHQLLQFQLKDLALYYKDKHDLVEQKLSSRDDDYSRRDRRDRDRDRGRDRDRGRDRERGG 474

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPML--CRSSGINRQ--SIGAIRVQPDLTFVEV 513
             R   +    F  ++G K   +   ++ ++    + G +++   IG I +    +F EV
Sbjct: 475 KPRRRDENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEV 534

Query: 514 SADGVDLLRRTVKLDK 529
                D +   ++  K
Sbjct: 535 EKSFKDNVLSNIQSMK 550


>gi|182415515|ref|YP_001820581.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177842729|gb|ACB76981.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 594

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 155/580 (26%), Positives = 255/580 (43%), Gaps = 63/580 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ + G+     +Q A++   L  +DV+  + TGSGKTVAF +     +  + 
Sbjct: 11  LSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAIPALERVDPK- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  A   L + PTRELAVQV  E+  L      ++ V   GG S  R+ R L  G+
Sbjct: 70  -----LRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRALAAGS 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+    L +  LK VVLDEAD MLD+GFR+DIE IL + P  R++L F
Sbjct: 125 QVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQLLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K   +D   + I +  +    ++     V    +  A+  ++  H  +
Sbjct: 185 SATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDVHDFR 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVFCST+  V    + L    + V  L G+LSQ +R   +   R       IATDVAA
Sbjct: 245 YGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLE+V + +L ++ E+  HR GRTGRAG+ G +   +      + + + R A +
Sbjct: 305 RGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVRWAKL 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK-----HDPEKIAAGF 420
            +     PS++ + E       +      +++  E K  D ++ +     +    I +  
Sbjct: 365 DLRRGRLPSLDEVEEARTNVFFEK--IRAALEAKEFKPHDRMIDRLLDQGYASTDICSAL 422

Query: 421 LRIHRAG---------------LCAPEEITPVSLVSGRDRFRDDSRAFKV---------- 455
           + + + G                 AP+     S    R  F  ++   +           
Sbjct: 423 IHLLQGGSTGTPAAVHESAKASAAAPDWARRKSAPESRTAFPSEAGEIRPSPKASSFAKP 482

Query: 456 ---------------------GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGI 494
                                         G S   L+VG + +     ++  +   + +
Sbjct: 483 TPDKTADGLPALAGRKKQKYARPPRTGAEPGMSPVVLNVGREHQVTPADIVGKIAGVTRL 542

Query: 495 NRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
               +GAI +    T V+V+ + V ++ + +    GI+LK
Sbjct: 543 AASIVGAIDIHERHTLVDVAENAVPVVIKKL---AGIRLK 579


>gi|228473039|ref|ZP_04057796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275621|gb|EEK14398.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 588

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 143/563 (25%), Positives = 259/563 (46%), Gaps = 26/563 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M +F+   +   + EA+ + G+   + VQ+A +   L    D++  AQTG+GKT AFG  
Sbjct: 8   MNLFKTLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLEAPTDMVALAQTGTGKTAAFGFP 67

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +               L +APTREL +Q+  EL+        V  V   GG S+  
Sbjct: 68  LLQLIDPTQ------RMTQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEE 121

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GAHI+V TPGR+ D +R +  +I+ +   VLDEADEML++GF +DI  IL  +
Sbjct: 122 QARSLKKGAHIIVATPGRMQDMMRREFTSIAQISYCVLDEADEMLNMGFYEDIRSILSET 181

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  +   +FSAT+   +  +AK +      + I  +N+  +++ +   +V    R  A+ 
Sbjct: 182 PDDKNTWLFSATMPAEVAKIAKEFMHHPKEITIGHKNQASNNVLHECYIVNGRQRYEALK 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   + +  ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 242 RLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQ 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++  +R 
Sbjct: 302 MLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSEAKRI 361

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + +    +  ++  PS   I E     +        ++    +    +  +L+  + E
Sbjct: 362 KTIEKIIQKTFEYKSIPSGMEICEIQLYHLANTIKDTQVNPAVNEYLPAIYDVLSGLNRE 421

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++    + +           +        +             G     +G + + +++G
Sbjct: 422 ELIQRMVAVEFNRFYTYYSKSKDLNAESPE-------------GKSYTSEGETRYFINIG 468

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            +     + L   L  + G+ +  I  + V+   +F    A+   L+  T   D  +  +
Sbjct: 469 ERDGYNWQLLKDFLRENIGLGKNDIFKVDVKDTFSFFNTEAEMTQLVLDTF-ADFKMDNR 527

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQ 557
            +  E    R  +  G K +  +
Sbjct: 528 AIHIEISQQRSSEGKGRKDRRDR 550


>gi|187734959|ref|YP_001877071.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425011|gb|ACD04290.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 604

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 156/579 (26%), Positives = 265/579 (45%), Gaps = 22/579 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I EA+   G+   +S+QE  +   +   D++  + TGSGKT+AF +     +  E 
Sbjct: 12  ISPEILEAIEVLGFDTPSSIQEQAIPAAIGGADIVGLSHTGSGKTLAFAIPALECIDPEE 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                      LA+ PTRELAVQ+ RE++ L      V AV   GG S   +   L+ G 
Sbjct: 72  ------RCVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDALRRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
             VVGTPGR+ D +    L +  L+ ++LDEADEMLD+GF +DIE I D+ P+ ++ L F
Sbjct: 126 QFVVGTPGRVMDLMESGALRLDGLRMLILDEADEMLDMGFLEDIERIADAMPEGKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+SP I+ L   + K+ V+++I         I+     V  S R   +  +L     K
Sbjct: 186 SATMSPEISRLVSRFMKEPVQISIERPTLTVPTIEQVYYEVVFSSRIEVLSRLLDTGKIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF +T+  V      L    + V  L G++ Q  R   +   R G  R+ +ATD+AA
Sbjct: 246 MGLVFANTKKVVDDVVDGLTARGYPVDRLHGDMPQMMRERVMDSFRKGSLRLLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D++ V++ EL  +PE+ +HR GRT RAGRKG ++  + +       R+ R   V
Sbjct: 306 RGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIERFIGV 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +  EP  +   + +   + ++ D   L+ ++ D     ++   +  PE +AA    + R
Sbjct: 366 KLTPEPVLTAVQVDQLRTESLVDD--ILERLKPDAVLPEELKEVEAAPEAMAAALFDLLR 423

Query: 426 AGLCAPEEITPVSLVSGRDRFR---DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                  +  P    + R R      +       G S  +   +    ++ G       +
Sbjct: 424 ERTHREVQPIPEDKPARRARRMPQTGEEAESPQKGDSWQHKGDTVTLFMNGGRMIGLRPK 483

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DLLRRTVKLDKGIQLKYLGG 538
            +  +   +  + + ++G IR+ P  + +EV A       + L         + ++   G
Sbjct: 484 DIAGLFYNTVEMEKGAVGDIRIFPKHSLIEVDASVAPLLLEALATATVCGYEVNVREDKG 543

Query: 539 EKPDFRG-----YKSSGFKSKNSQDGATKRFKRFKGASK 572
             P++ G      ++ GF++    +        F+G   
Sbjct: 544 A-PEYSGTPRSSRRNGGFRNSYRGERDRSDRSGFRGNRG 581


>gi|313885882|ref|ZP_07819622.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924637|gb|EFR35406.1| putative DEAD-box ATP-dependent RNA helicase CshA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 553

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 154/544 (28%), Positives = 267/544 (49%), Gaps = 23/544 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            F+  ++   +  A S+ G+     VQ+ ++      + D++  ++TGSGKT A+GL L 
Sbjct: 2   TFDTLDLSPELRRATSDLGFSEPMPVQQEVIPYLSSHRGDLIALSKTGSGKTAAYGLPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             ++      +  SAP  L + PTRELA+QV  +L  L   T V   +   GG S+  + 
Sbjct: 62  ERIIQ-----AKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HI+V TPGRLCD +R K + +  +  VVLDEAD MLD+GF+ D++ IL + P+
Sbjct: 117 RQLAKGYHIIVATPGRLCDLLRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQ 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +    +FSAT+S  +  +A NY  DA  V I + N+ ++DI +  V V    +  A+  +
Sbjct: 177 QVEHWLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRV 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + Y+     I+FC TRA      + L    +    L G+LSQ +R   +   R    ++ 
Sbjct: 237 VDYYPNIYGIIFCRTRAETKEIAEWLIRDGYNADTLHGDLSQAQRDMVMNRFRIRNLQLL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V+H  L ++P++  HRSGRT RAG+ G+S+ +      ++   
Sbjct: 297 VATDVAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRI 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAKHDP 413
           + R A + +   P PS + I ++    +     + DS +      +    +   LA   P
Sbjct: 357 IERHAGIRIEAMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAIVQKLAWLPP 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPV----SLVSGRDRFRDDSRAFKVGGGSRDNFK----G 465
           E+I    L +    +      TP      L +   ++R  S   +     +   +     
Sbjct: 417 EEIIRRVLTLEADRIMRYYANTPDLSAQELATEEPKYRTKSTPEEHRKAPKKRSRTDLPP 476

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +++G + K     L+ ++ R+      +IG I +    ++ EV+++  D +   +
Sbjct: 477 MTSLRINLGKRDKLYPNRLLELINRTLPYQ-ITIGKIDLSLSYSYFEVASEWADTVAAAL 535

Query: 526 KLDK 529
             ++
Sbjct: 536 SEEE 539


>gi|326335491|ref|ZP_08201678.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692257|gb|EGD34209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 572

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/531 (26%), Positives = 253/531 (47%), Gaps = 25/531 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLA 57
           M +FE   +   + EA+ + G+   + VQ+A +   L    D++  AQTG+GKT AFG  
Sbjct: 1   MNLFETLGLSAPLLEAIDDLGFERPSEVQQAAIPVLLAVPTDMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   +               L +APTREL +Q+  EL+        V  V   GG S+  
Sbjct: 61  LLHLINPTEHI------TQGLILAPTRELCLQIASELKQYAKYMPQVHIVAIYGGASIEE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ GAHI+V TPGR+ D +R + ++I+H+   +LDEADEML++GF +DI  IL  +
Sbjct: 115 QARNLKKGAHIIVATPGRMQDMMRREFVSITHINYCILDEADEMLNMGFYEDIRAILAET 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+++   +FSAT+   +  +AK +      + I  +N+   ++ +   +V    R  A+ 
Sbjct: 175 PREKNTWLFSATMPTEVAKIAKEFMHHPKEITIGHKNQASDNVLHECYIVNGRQRYEALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   + +  ++VFC T+       + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPSIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKGFRAKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++  +R 
Sbjct: 295 MLVATDVAARGIDVDDITHVIHYQLPDEIETYTHRSGRTGRAGKSGVSMVILTKSETKRI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + + R    +  ++  PS   I E     +        ++    +    +  +L   + E
Sbjct: 355 KTIERIIQKTFEYKTIPSGMEICEIQLYHLANTIKDTQVNPAVNEYLPAIYDVLNNLNRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++    + +                       +      +  G    + +G + + +++G
Sbjct: 415 ELIQRMVAVEFNRFYNYYS-------------KSKDLNAESSGEKFSSTEGETRYFINIG 461

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   + R L   L  + G+ +  I  + V+   +F    A+   ++  T 
Sbjct: 462 ERDGYDWRLLKDFLRENIGLGKNDIFKVDVKDTFSFFNTEAEMTQIVLDTF 512


>gi|332297229|ref|YP_004439151.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332180332|gb|AEE16020.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 632

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 164/603 (27%), Positives = 277/603 (45%), Gaps = 40/603 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            FE++   ++   A++ +G+   + +Q   +   L  + +V+  A+TG+GKT AFGL L 
Sbjct: 6   SFEDLGLDEITLNAIALKGFEVPSPIQVLAIPRLLGGEANVIAKARTGTGKTAAFGLPLV 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+  +           AL +APTRELA+QV +E++ L   T   +A   GG S+  + R
Sbjct: 66  QTIREDKGHV------RALILAPTRELALQVCKEIDSLTTGTYPRLAAVYGGQSMGEQLR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ DHI  K L++S +   +LDEADEMLD+GF DDIE I   +  +
Sbjct: 120 ALKRGVEIVVGTPGRVQDHIERKSLDLSQIDYFILDEADEMLDMGFIDDIEAIFAKANPE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            R+L+FSAT+   I  +A  +  D   V   +   +    + +  +V  SD+  A+V ++
Sbjct: 180 SRILLFSATMPQPILKIASRFMGDYEIVEEETSPEEPVLTEQKYWIVRESDKIEALVRLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF  T+A     T+ L E  ++  AL G++ Q +R   L   R+ + R+ +
Sbjct: 240 DISPDFYGLVFTQTKADADMITRQLDERGYEAAALHGDIPQAQREKILYRFRNKKTRILV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  L  V++  L  +    +HR GRTGRAG KG++  ++    +R+ E L
Sbjct: 300 ATDVAARGIDIEGLTHVVNYALPFDGPTYVHRIGRTGRAGAKGLAFTLVRPEERRKLEYL 359

Query: 360 ----FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDP 413
                + A  ++   P P V  +      R+  D + L    G +        A      
Sbjct: 360 KAAVRKSAKGTMTEAPVPPVSDVLAAKRARLF-DAMKLSLANGGQSSDDAAGNADGGESA 418

Query: 414 EKIA--------AGFLRIHRA--GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           +  A        + F R+         P+++    L     +  D SR   +      N 
Sbjct: 419 DGFAPPRSAGEDSVFARMAEELCSGKDPQDVLASVLKLSYGKQLDPSRYGDISTLKAFNP 478

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS-ADGVDLLR 522
                  + +G +     R +     +   I  + +  I V  + + V +    G+D L 
Sbjct: 479 GKQIRLFVQLGRRDGFYPREIAEYFSKLLNIQPRLVDRIDVAENFSLVSLPMQAGMDALE 538

Query: 523 RTVKLDKGIQLKYLGGE-----------KPDFRGYKSSGFKSKN-SQDGATKRFKRFKGA 570
           R+ K D  +   ++  +           +P  RG+ ++  +S    ++G   R    +G 
Sbjct: 539 RS-KRDHSLPHMHIDSKDAQNGESGFANRPGRRGFGNAESRSGGFRREGREFRHDGGRGF 597

Query: 571 SKN 573
            ++
Sbjct: 598 GRD 600


>gi|295133956|ref|YP_003584632.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981971|gb|ADF52436.1| DeaD-like DEAD box family ATP-dependent RNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 598

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 148/582 (25%), Positives = 265/582 (45%), Gaps = 29/582 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+ +     I +A+ + G+ + + VQE  +   L E+ D++  AQTG+GKT AFG  
Sbjct: 1   MNKFQELGLNSSILKAIEDMGFESPSEVQEKTIPILLDEETDMVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +  +      +    AL ++PTREL +Q+  EL+        +      GG S+  
Sbjct: 61  LIQKIDPK------SKHTQALILSPTRELCLQITNELKNYSKYEPSLHPVAVYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + ++ GA I+V TPGR+ D IR K  +IS ++  VLDEADEML++GF +DI  IL  +
Sbjct: 115 QAKQIERGAQIIVATPGRMQDMIRRKLTDISKIEYCVLDEADEMLNMGFYEDITAILSHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK++   +FSAT+   + T+AK + ++ V V + S+N   +++ +   LV   DR  A+ 
Sbjct: 175 PKEKNTWLFSATMPKEVATIAKKFMRNPVEVTVGSKNMGATNVSHEFYLVNARDRYAALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVIFCRTKRDTQKVAERLIEDGYSAAALHGDLSQNQRDLVMKSFRTRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDITHVINYQLPDEVETYTHRSGRTGRAGKLGTSMVIVSKSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPE 414
           + + R    S   +  P  + I +     +  D    +      +    ++ +L     E
Sbjct: 355 KSIERIIKQSFDEKQLPDGKDICKVQLLHLANDIKDTEINHDIEEYLPNINKVLEDFTKE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++   F  +         +                  +   GG + D    S+ + ++VG
Sbjct: 415 ELIKKFFSVEFTRFSNYYKKASDL-------------SPVSGGANVDLDPNSTRYFMNVG 461

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKG 530
            K   +   L   L  +  + +  +  + V+   +F        D +           + 
Sbjct: 462 KKDGFDWMSLKDFLKDALQLGKDGVFKVDVKDSFSFFNTENSETDKVLNAFNDFEYQGRK 521

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           I ++                   ++   G +      KG S+
Sbjct: 522 INVEVTKNSNSGGGKGGRRRKSRRDDGFGKSDSKSGNKGRSR 563


>gi|332520832|ref|ZP_08397292.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043362|gb|EGI79558.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 622

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 136/529 (25%), Positives = 254/529 (48%), Gaps = 21/529 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+ +   + + + +++ G+   + VQE  +   L+++ D++  AQTG+GKT AFG  
Sbjct: 1   MSTFQELGLNEDLLKGITDLGFETPSEVQEKAIPILLQDEGDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +         +     L ++PTREL +Q+  E++        +  V   GG S+  
Sbjct: 61  MLQKIDVN------SRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+++ GA I+V TPGR+ D I  K ++I+ ++  VLDEADEML++GF++DI  IL  +
Sbjct: 115 QAREVKRGAQIIVATPGRMKDMISRKLVDITKIQYSVLDEADEMLNMGFKEDITDILSGT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK +   +FSAT+   +  +AK++  +   + +  +N   S++ +   LV   DR  A+ 
Sbjct: 175 PKDKSTWLFSATMPKEVARIAKDFMHEPQEITVGHKNESTSNVSHEYYLVNARDRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R  + +
Sbjct: 235 RLADANPDIFSVIFCRTKRDTQKVAEQLIEDGYSAGALHGDLSQNQRDIVMKQFRTRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +LS   E   HRSGRTGRAG+ G+S+ ++ ++  RR 
Sbjct: 295 MLVATDVAARGIDVDDVTHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPE 414
             + R  N     +  P+   I E     +       +     +K  + ++ +      +
Sbjct: 355 RSIERIINKKFEKKDIPNGMEICEVQLMSLANKIHNTEINHEIDKYLEDINTMFEDTSKD 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++   F  +         +      +S  D  RD  RA         +   ++ + ++VG
Sbjct: 415 ELIKKFFSVEFTRFFNYYQKAKDLNISAGDPNRDGGRA---------SSGNATRYFINVG 465

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            K       L   L    G+ +  +  +  +   +F     +  + +  
Sbjct: 466 EKDGFNWMSLKDFLKEQLGLTKDDLFKVDTKDTFSFFNTEKEHEEKVLA 514


>gi|288574292|ref|ZP_06392649.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570033|gb|EFC91590.1| DEAD/DEAH box helicase domain protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 574

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 177/534 (33%), Positives = 274/534 (51%), Gaps = 27/534 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL+ +G+ +   VQE +L  + R+ D++V A+TGSGKT+ F L L + L  E
Sbjct: 14  ELREELLNALAAKGFDSPMPVQEKVLESENRDGDLVVQARTGSGKTLGFLLPLLNELPRE 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L ++PTRELA Q+  E EW+    G+  A  +GG+ + R+ +DL+ G+
Sbjct: 74  TA------TPRILVLSPTRELAQQIAGEAEWIGKYMGITTASLVGGMDMERQIKDLRRGS 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR  DHIR + L    ++ +VLDE D MLD+GFRDDIE IL++ P   R  +F
Sbjct: 128 ALVVGTPGRTMDHIRRRTLKTDTIQTIVLDEGDTMLDMGFRDDIEAILNTLPDPHRTWLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L K Y      + +  +  QH DI +RA LV    R   +VN+L +   +
Sbjct: 188 SATMPDEVASLTKRYLDSPSWITLCHDEDQHEDITHRAYLVPSGKRLEGLVNVLLWENPE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+A      + L E  F   AL G++SQ ER++ +   R GR    +AT+VAA
Sbjct: 248 MGLIFCHTKAGTVETMERLQEEGFAASALHGDMSQLERNSVMNAFRQGRIPYLVATNVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI   L  N E  +HRSGRTGRAG++G ++ V+    + R + + R +++
Sbjct: 308 RGLDVQGVSHVIQIGLPDNLETFVHRSGRTGRAGQEGRNILVLTPREKGRFKAMLRASSM 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + W   P V  I +  AQR L++   L  D    + +   D LL    P  + A  L  
Sbjct: 368 DLKWANVPDVAEIAK--AQRGLRESALLGGDEPDQEIQAWADELLDMMAPRDLVARLLES 425

Query: 424 HRAGLCAPEEITP---------------VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           +  GL    ++                     SGRDR R   R    G  S    +  S 
Sbjct: 426 YVNGLPNGYDLRKSLQNELENRRSGRDRGDRFSGRDRNRSPRRNENRGNRSSFRGRAQS- 484

Query: 469 FSLSVGS-KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
             LS G   Q      ++  +C++  ++R  +G IR++ + T VE+     D +
Sbjct: 485 IKLSKGRIDQDWSVGRILATVCQALDVDRNEVGNIRMRDNHTEVELGPLAADRM 538


>gi|171910495|ref|ZP_02925965.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 673

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 159/552 (28%), Positives = 268/552 (48%), Gaps = 33/552 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +     I +A++  G+   + +QE  + P L  +DV+  +QTGSGKT+AF + + 
Sbjct: 45  KLFTELGLAPDILKAMTALGFEQPSPIQEKGIPPALEGRDVVGQSQTGSGKTMAFAIPVV 104

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +   +          AL + PTRELA+QV  E+  L      + A+   GG +  R+ 
Sbjct: 105 QKIDPRD------RGVRALIMCPTRELAMQVCEEVAKLTVHKPGLKALPIYGGATYDRQI 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++GA IVVGTPGR+ D +    L +  L+ +V DEADEMLD+GFR+DI+ ++   P+
Sbjct: 159 RGLRDGAQIVVGTPGRILDFLERGMLRLDALQTLVFDEADEMLDMGFREDIDSLMALVPE 218

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++  I  L ++Y K+A  + I  +      I+ R   V    +   +  +
Sbjct: 219 NRQTLFFSATLAGPIRHLVESYTKNAALITIEHKALTVPTIEQRYYEVNSRSKIEVLCRL 278

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF +T+ +V   T  L    + V  L G+L+Q  R   ++  R G   V 
Sbjct: 279 LDIENPRLAIVFANTKKAVDDITDALMARSYGVDRLHGDLNQTMRDRVMKNFRAGNVEVL 338

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATDVAARG+D+ D++LV++ +L  + E+ +HR GRTGRAGR G ++ ++        +R
Sbjct: 339 AATDVAARGLDVDDVDLVVNFDLPYDEEDYVHRIGRTGRAGRSGKAMSLVSGRDIFLLQR 398

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R A V++     P+ E +  +        LQ  L        E  +  +L A H    
Sbjct: 399 IQRYAKVNIARHKVPTREEVDGKRVDTHFAKLQATLEEGKFTSHESTVQRLLDAGHSSTD 458

Query: 416 IAAGFLRIHRAGLCAP-EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF----------- 463
           IA+  L +  +      EEI        R   R+D + ++  G  +  F           
Sbjct: 459 IASALLHLLLSDSARESEEILEDRPKPERKPRREDRQDYERSGPPQQRFEQREGGREFRP 518

Query: 464 ---------KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                    +G +   ++VG+  +   R +   + R++ + + S+G I +    ++V V 
Sbjct: 519 PGPRPQATQEGYTRLFINVGAMDEVTPREISGAIYRTANLPQGSLGRIEIFSKCSYVGVP 578

Query: 515 ADGVDLLRRTVK 526
            + V  +   ++
Sbjct: 579 TEFVQQVLSGIE 590


>gi|77462023|ref|YP_351527.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386441|gb|ABA77626.1| ATP-dependent RNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 602

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 247/469 (52%), Positives = 325/469 (69%), Gaps = 11/469 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY +LT VQEA+L   +  +D LVSAQTGSGKTVAFG+A+A  +L   DR   A  P+A
Sbjct: 17  KGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKTVAFGIAIADQILQGADRLLFADTPIA 76

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           LAIAPTRELA+QV REL WLY + G  +A C+GG+    ERR L  GAHIVVGTPGRL D
Sbjct: 77  LAIAPTRELALQVARELGWLYGEAGAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRD 136

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI    L++S L+AVVLDEADEMLDLGFR+D+EFIL S+P++RR LMFSAT+   I  LA
Sbjct: 137 HIERGSLDLSGLRAVVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALA 196

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K +Q+DAVR+  A E +QH+DI+YRA+ V+  D+++AI N+LR++ A +AIVFC TR +V
Sbjct: 197 KEFQQDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFCKTRLAV 256

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
           +     +    FQVVALSGELSQQER++ALQ +RDGRARVCIATDVAARGIDLP LELVI
Sbjct: 257 NHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIATDVAARGIDLPGLELVI 316

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           HA+L +N E LLHRSGRTGRAG KG+SV +   +  R+A+RL   A +   W   PS + 
Sbjct: 317 HADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPSEVRKAQRLLTGAKLVADWGKPPSADE 376

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPV 437
           ++ERD  R+L+ P+    +  DE  + + LL +  P +++A F+R+ R G  APE +  +
Sbjct: 377 VQERDDARLLEHPVLGQDL-SDEMPLAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDL 435

Query: 438 SLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           +      R   +             F  + W++++VG   +AEARWL+P
Sbjct: 436 APPEPSQRAPRER----------GEFGEAVWYAVAVGHTGRAEARWLLP 474


>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
 gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
           ATCC 49540]
          Length = 501

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 143/483 (29%), Positives = 229/483 (47%), Gaps = 11/483 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ R
Sbjct: 61  EHVDTDNPNI------QAIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+    I+VGTPGRL DH+    + + H+K +VLDEADEML++GF DDIE I+D +P  
Sbjct: 115 NLKQHPQILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   ++ L    +    + G+LSQ  R+  ++  + G   + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ E   +          D L         ++  + LLA HD   + 
Sbjct: 355 EKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELISQDSTERYQEAAEKLLATHDATDLV 414

Query: 418 AGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           A  L           P +ITP   +  R+     S     G     +         + G 
Sbjct: 415 AALLNEMTKEPASDVPVKITPERPLPRRNHRNGRSGHGYRGPRDHRHNNYGGHHRHNNGG 474

Query: 476 KQK 478
           + +
Sbjct: 475 RSR 477


>gi|319951635|ref|YP_004162902.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420295|gb|ADV47404.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 633

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 141/532 (26%), Positives = 252/532 (47%), Gaps = 12/532 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M  FE   + + I +A+++ G+   + VQE  +   L  + D++  AQTG+GKT AFG  
Sbjct: 1   MTKFEALGLKKSILDAITDMGFETPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           L   + A+      +     L ++PTREL +Q+  E++        +  V   GG S+  
Sbjct: 61  LIQKIDAD------SRTTQGLILSPTRELCLQITNEMQSYSKYEKNINVVAIYGGASITD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R ++ GA I+V TPGR+ D +    ++IS +   +LDEADEML++GF +DI+ IL  +
Sbjct: 115 QARQIKRGAQIIVATPGRMKDMMSRGLVDISKIDYCILDEADEMLNMGFFEDIKEILSDT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK++   +FSAT+   + T+AK + +    + + ++N   S + +   +V+  DR  A+ 
Sbjct: 175 PKEKSTWLFSATMPREVATIAKKFMRSPQEITVGAKNSGASTVQHEYYVVSGRDRYPALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   +   R  + +
Sbjct: 235 RLADTNPDIFSVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ +I ++  R+ 
Sbjct: 295 ILVATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPE 414
           + +  +     + +  P+   I E     +       +     E     ++ +    D E
Sbjct: 355 KAIENKIGQKFITKNIPTGMEICEIQLYHLANKIKDTEVNAEVETYLPAINKVFEGIDRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++    + +           T     S   R     R  +          GS  + ++VG
Sbjct: 415 ELIKKVVSVEFTRFFNYYNKTRDLATSSSGREERGERGERSNNSGEIPTDGSVRYFINVG 474

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            K + +   L   L  +  + +  I  + V+   +F    A     +  T K
Sbjct: 475 EKDEYDWMSLKDFLRDTLEVGQDDIYKVDVKESFSFFNTDAAITPKILETFK 526


>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
 gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
           PB013-T2-3]
          Length = 498

 Score =  246 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 144/482 (29%), Positives = 233/482 (48%), Gaps = 13/482 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q + +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL I+PTRELA+Q   EL  L     V V V  GG  + R+ +
Sbjct: 61  EHVDTDNPNI------QALIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGRL DHI    + + H++ +VLDEADEML++GF +DIE I+  +P +
Sbjct: 115 SLKHHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  + + +  +   V I ++      +D   V     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKRIGEQFMTNPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   +K L    +    + G+L+Q  R+  ++  ++G   + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKNGDLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    PS E   +          D L         K+  + LL  HD   + 
Sbjct: 355 EKLTRVRMLPLKPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEELLESHDATDLV 414

Query: 418 AGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD-NFKGSSWFSLSVG 474
           A  L      A    P +ITP   +  R      +          + N +G+  +  S G
Sbjct: 415 AALLNDMTKEAASEVPVKITPERPLPRRHHGSKRTDYHGGNHRHYNGNRRGNGRYR-SRG 473

Query: 475 SK 476
            +
Sbjct: 474 HR 475


>gi|255013213|ref|ZP_05285339.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 587

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 154/587 (26%), Positives = 260/587 (44%), Gaps = 45/587 (7%)

Query: 18  RGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
            GY +   VQE ++   L  + DV+  AQTG+GKT A+GL +   +            P 
Sbjct: 1   MGYESPMPVQEEVIPFLLGEDNDVIALAQTGTGKTAAYGLPILQKINVSQ------YQPQ 54

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           AL + PTREL +Q+  +L         +  +   GG S+  + + L+ G H+VV TPGRL
Sbjct: 55  ALILCPTRELCLQIADDLNDYSKYIDNLKVLPVYGGSSIESQIKTLKRGVHVVVATPGRL 114

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D +  K +++S++K V+LDEADEML++GF D I  IL + P+ R ML+FSAT+   I +
Sbjct: 115 IDLMNRKTVDLSNVKNVILDEADEMLNMGFTDSINEILAAIPENRNMLLFSATMPKEIAS 174

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           + K Y KD   + I  +N  + +I     +V   D+  A+  +  Y+     I+FC TR 
Sbjct: 175 ITKKYMKDPKEIVIGRKNEGNKNIRDIYYMVRAQDKYLALKRLADYYPNIYGIIFCRTRK 234

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L +  +   +L GELSQ +R   +Q  R    ++ +ATDVAARG+D+ DL  
Sbjct: 235 ETQEIADKLIQDGYNADSLHGELSQAQRDYVMQKFRIKNIQLLVATDVAARGLDVDDLTH 294

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VI+  L    E+  HR GRTGRAG+ G+++ +     + +   + R  N        P+ 
Sbjct: 295 VINYGLPDEVESYTHRRGRTGRAGKTGIAISICHVREKGKIREIERIINKKFDKGKMPTG 354

Query: 376 EAIRERDAQRILQDPLFLDSIQGDEKKMVDVL------LAKHDPEKIAAGFLRIHRAGLC 429
           E I E+    ++     ++ ++ +E+++  ++      L   D E I    + +    + 
Sbjct: 355 EQICEKQLFNLVDQ---IEKVKVNEEEIASLMPSIYRKLEWLDKEDIIKRVVSLEFNRMI 411

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLC 489
              +      V          R     GG  +  +G + F ++ G   +     L+ ++ 
Sbjct: 412 DYYKDNDDIEVVD----ESAPRERGKRGGRGEAEEGYTRFFINFGKTDELTPPQLIELV- 466

Query: 490 RSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKYLGGEKP------ 541
                 +  IG I ++ + +F EV     + +  ++      G ++     +        
Sbjct: 467 NKCVPGKVRIGRIDLRDNFSFFEVEEGEANRVMDSMNGFEVDGRRISVEPAQAKGEGGKG 526

Query: 542 ---------------DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                          D R     G  S+   D   +R  R     K 
Sbjct: 527 SRGSRGGSRSGNGFRDRRDSGRGGRDSRRESDRGGRRSSRSDDKPKR 573


>gi|56418761|ref|YP_146079.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|81675946|sp|Q5L3G9|CSHA_GEOKA RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|56378603|dbj|BAD74511.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 467

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 235/469 (50%), Gaps = 11/469 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   Q + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N      SA  AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVNVKN------SAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H+  VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           + R     +     P+++   E   +  ++  L +   +     K+  + LL +HD   I
Sbjct: 355 IERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTI 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            A  L++  R     P ++T    ++ +   +   R            +
Sbjct: 415 VAACLKMLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRR 463


>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 518

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 148/462 (32%), Positives = 241/462 (52%), Gaps = 14/462 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   + +A++E G+   T +Q   +   L  +D++  AQTG+GKT AFGL L
Sbjct: 1   MNTFADFGLEPKVLQAITELGFEEATPIQAKSIPIALSGRDLIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  E DR       +AL + PTRELA+QV  E+  L    G       GG  + R+ 
Sbjct: 61  INKIPKEEDRI------VALVMTPTRELAIQVAEEIGKLSRFKGTRSLPIYGGQDIVRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  +K VVLDEADEMLD+GF DDI+ IL   P+
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKLDDVKTVVLDEADEMLDMGFMDDIQSILKLVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+   I  LA+ + K+   V++  +      ID   + V    + +A+  +
Sbjct: 175 DRQTMLFSATMPANIQKLAQQFLKNPEHVSVIPKQVSAPLIDQAYIEVHERQKFDALTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V 
Sbjct: 235 LDMESPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRDNVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G++   +          
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREMDHLRF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDEKKMVDVL-LAKHDPEK 415
           + R     +  +P PS+    E   QRI+ + L   +++ + +E K + +  L ++D   
Sbjct: 355 IERITRHKIARKPLPSIAEAIEGK-QRIIAERLIELVENGELNENKGIAIQLLEQYDSVN 413

Query: 416 IAAGFLRIHRAGLCAPE--EITPVSLVSGRDRFRDDSRAFKV 455
           + A   ++           E+TP   +  + R  D   + + 
Sbjct: 414 LLAAAFKLITGDKNEKVSIELTPEEPIRVKRRNPDIRSSGRK 455


>gi|261324240|ref|ZP_05963437.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261300220|gb|EEY03717.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
          Length = 537

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 237/430 (55%), Positives = 312/430 (72%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + + I   +  AL+ RGY  LT+VQ A+L P+    D+LVSAQTGSGKTVAFGLA+A+
Sbjct: 1   MSLPDTIAPALSGALTARGYNTLTAVQNAVLAPETLASDLLVSAQTGSGKTVAFGLAMAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+L +  RF  A APLA+ IAPTRELA+QV RELEWLYA TG  +A C+GG+ +  ERR 
Sbjct: 61  TILEDELRFGDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G+HIVVGTPGRL DHI    L++S L+A+VLDEADEMLD+GFR+D+EFIL  +P+ R
Sbjct: 121 LERGSHIVVGTPGRLRDHITRNALDMSQLRAIVLDEADEMLDMGFREDLEFILGEAPEDR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+   I  LAK +Q +A+R+ + SE  QH+DIDY A+ V   +RD+AI+N L 
Sbjct: 181 RTLMFSATVPKPIAQLAKRFQNNALRITVQSETSQHADIDYVAMPVPPHERDHAIINTLL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ ++N+I+FCSTR +V      L+   F VVALSGELSQ ER+NALQ MRDGRARVC+A
Sbjct: 241 YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP+L+LVIHA+L +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL 
Sbjct: 301 TDVAARGIDLPNLDLVIHADLPTNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLL 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             A +     PAPS+ A++ +  +RIL   +F   ++ + ++++  L  ++ PE+IA+ F
Sbjct: 361 HMAKLDAQTVPAPSIAAVQVKTNERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAF 420

Query: 421 LRIHRAGLCA 430
           L    A   A
Sbjct: 421 LNREVASYPA 430


>gi|86142743|ref|ZP_01061182.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85830775|gb|EAQ49233.1| putative RNA helicase dead-box protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 592

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 151/609 (24%), Positives = 272/609 (44%), Gaps = 56/609 (9%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F+   +   I +A+++ G+   + VQE  +   LRE+ DV+  AQTG+GKT AFG  
Sbjct: 1   MSTFKALGLNDAILQAVTDMGFKAPSEVQEKAIPVLLREETDVVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +   N           L ++PTREL +Q+  EL+   +   G+ V    GG ++  
Sbjct: 61  LIQRIDVNNRN------TQGLILSPTRELCLQITNELKNYSSHVKGLNVVAVYGGANIQE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R +  GA I+V TPGR+ D +R   ++I+ +   VLDEADEML++GF +DI  IL  +
Sbjct: 115 QARQISRGAQIIVATPGRMQDMMRRNMVDITGIDYCVLDEADEMLNMGFYEDITTILADT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK ++  +FSAT+   +  +AK + K  + + + ++N    ++ +   +V   DR  A+ 
Sbjct: 175 PKDKKTWLFSATMPKEVARIAKQFMKSPIEITVGTKNMGAENVSHEYYMVNARDRYQALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +   +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + +
Sbjct: 235 RLADANPEIFSVIFCRTKRDTQKVAENLIEDGYNASALHGDLSQNQRDLVMKSFRNRQIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G+S+ ++ ++  R+ 
Sbjct: 295 MLVATDVAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGISMVIVSKSELRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE 414
             L +  N     +  PS   I E     +  D     ++         ++ +L     E
Sbjct: 355 RTLEKIINKKFTQKEIPSGMEICEVQLMHLANDIRNTKINEEINPYLYSINEVLEGLSRE 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           ++      +         +      V+ +   +++S               S+ F ++VG
Sbjct: 415 EVIKKVFSVEFTRFFNYYQKAKDLNVAVKADLKEES-------------GESTRFFINVG 461

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK----LDKG 530
            K   +   L   L  ++G+    I  +  +   +F     +  D +    +      + 
Sbjct: 462 GKDGFDWMSLKDFLKETTGL-GDGIYKVDCKDSFSFFNTDTEHKDTILALFEDFKLQGRQ 520

Query: 531 IQLKY------------------------LGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
           I ++                           G   + RG  S G   +  +    K+  +
Sbjct: 521 IHVEVTKDTRGGGGGGKRKKGGKGRGRRNDSGFNGNQRGRNSKGSGERRGKSKPNKKENK 580

Query: 567 --FKGASKN 573
             F G  + 
Sbjct: 581 SPFSGKRRR 589


>gi|257457389|ref|ZP_05622560.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
 gi|257445311|gb|EEV20383.1| DEAD/DEAH box helicase [Treponema vincentii ATCC 35580]
          Length = 646

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 157/618 (25%), Positives = 263/618 (42%), Gaps = 70/618 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + +  A++ +G+   T +Q   +   L    +V+  A+TG+GKT A+GL L   L   
Sbjct: 25  LDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGLPLVQEL--- 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P AL + PTRELA+QV  E+E     T   +    GG S+  + R+L+ G 
Sbjct: 82  ---REPREKPRALVLVPTRELALQVASEIESFKEGTHPRITTVYGGASIVEQLRNLKRGC 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV GTPGR+ DH+    LN+  ++  +LDEADEML++GF +DIE I   +    R+LMF
Sbjct: 139 EIVAGTPGRVIDHLERGSLNLDSIEYFILDEADEMLNMGFIEDIETIFKKANPDSRVLMF 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A ++  +   V   +        +    +V   D+  A+V ++      
Sbjct: 199 SATMPKQILKIAADFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTAENF 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+       K L E  ++  AL G++ Q +R   L   R G+ R+ +ATDVAA
Sbjct: 259 YGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V++  +  +     HR GRTGRAG KG +V  I  N +RR + L R A  
Sbjct: 319 RGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRRHARG 378

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP----EKIAAGFL 421
            ++    PS+E +  +   R+            D ++ +D + A+H       ++A   L
Sbjct: 379 ELLEGKIPSIEKVLAQKQDRLF----------SDLRRQLDTVQAEHTVNKSFIELARELL 428

Query: 422 RIHRAGLCAPEE------ITPVSLVSGRDR------------------------------ 445
             ++A L A EE       T V+  +  D                               
Sbjct: 429 AGNKASLAATEETAADGTDTAVANTANVDEAVAFGAEAAVSGVKHIDSAELLAAVLQLHY 488

Query: 446 --------FRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                   +R+           + + + +    + +G K     R L         I   
Sbjct: 489 GSVLSASHYRNIKIPRSEEKRGKPSGENTVRLYVGLGRKDGTSKRSLAQFFSTLLSIPEH 548

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF--RGYKSSGFKSKN 555
           ++  I +    +  ++ AD      R  K    +   ++  +  +   +  + +G   K+
Sbjct: 549 AVDRIELFDRFSLADLPADAAHEALRLSKKRANMPHIHIDTKSDNVTDKNAQPAGSAKKS 608

Query: 556 SQDG---ATKRFKRFKGA 570
           S        +R   F+  
Sbjct: 609 SSRKLREGNRREAFFREK 626


>gi|196250549|ref|ZP_03149239.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196209898|gb|EDY04667.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 467

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 140/469 (29%), Positives = 236/469 (50%), Gaps = 11/469 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N       A  AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVDVKNG------AIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H++ VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  D   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           + R     +     P++    E   +  ++  L +   +     K+  + LL +HD   I
Sbjct: 355 IERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEHDSVTI 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            A  L++  R     P ++T    ++ +   +  SR      G     +
Sbjct: 415 VAACLKMLTREPDTTPVKLTEEPPLAVKREKKRGSRPDSSARGRTKKRR 463


>gi|228936735|ref|ZP_04099526.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822944|gb|EEM68785.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 481

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 149/538 (27%), Positives = 251/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + I  AL+  GY N T VQ  ++   L+++D++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFTNYALSKEIVRALTGLGYENPTEVQGEVIPVALKKRDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMDLPTYIEIKAAGITTDKIEHTLFETREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               +EK     ++ K     +  G
Sbjct: 358 ESYIGFEIPKAYAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKSADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      ++ +T+K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPIVLKTMKTTTIKGKQLKV 476


>gi|261418549|ref|YP_003252231.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|297528577|ref|YP_003669852.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|319765363|ref|YP_004130864.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261375006|gb|ACX77749.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|297251829|gb|ADI25275.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
 gi|317110229|gb|ADU92721.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 234/469 (49%), Gaps = 11/469 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   Q + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N       A  AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVDVKNG------AIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H+  VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           + R     +     P+++   E   +  ++  L +   +     K+  + LL +HD   I
Sbjct: 355 IERTTKRKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTI 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            A  L++  R     P ++T    ++ +   +   R            +
Sbjct: 415 VAACLKMLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRR 463


>gi|229035098|ref|ZP_04189045.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
 gi|228728283|gb|EEL79312.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1271]
          Length = 481

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 149/538 (27%), Positives = 253/538 (47%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + +I 
Sbjct: 178 RMTMLFSATLPKDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 MIENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +  E APS E + +  A  I ++ ++   I   +K              +  G
Sbjct: 358 EEYIGFEIPKELAPSKEEVMKGKA--IFEEKIYAKPIIKKDKS-----------ADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G++   IG I +Q ++++VE+      L+ + ++    KG QLK 
Sbjct: 419 RAVDFVGTIAKIQGVSADDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKV 476


>gi|138893877|ref|YP_001124330.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265390|gb|ABO65585.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 467

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 235/469 (50%), Gaps = 11/469 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELGLSKEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N          AL +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  VEKVDVKNGVI------QALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   H++VGTPGR+ DHI    L + H++ VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHVIVGTPGRIIDHINRGTLRLEHVRTVVLDEADEMLNMGFIEDIEAILRHVPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A+ +  D   V + ++     +I    + V    + + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIAERFMNDPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHH 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           + R     +     P++    E   +  ++  L +   +     K+  + LL +HD   I
Sbjct: 355 IERTTKRKMERMKPPTLNEALEGQQRIAIEKLLNVAEAENLSFYKRAAEELLEEHDSVTI 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            A  L++  R     P ++T    ++ +   +  SR      G     +
Sbjct: 415 VAACLKMLTREPDTTPVKLTEEPPLAVKREKKRGSRPDSSARGRTKKRR 463


>gi|284035184|ref|YP_003385114.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283814477|gb|ADB36315.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 643

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 161/606 (26%), Positives = 273/606 (45%), Gaps = 85/606 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +A+++ G+++ + +Q   + P L  +DV+  AQTG+GKT AFG+     +  ++
Sbjct: 38  ISPELLQAVTDMGFISPSPIQAEAIPPILDGRDVIGQAQTGTGKTAAFGIPALDLIDVQD 97

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                  +   L + PTRELA+QV  E++ L     G+ +    GG S+ R+ R L++G 
Sbjct: 98  ------RSVQTLILCPTRELALQVAEEIKKLAKYKRGIRIEAIYGGDSIERQIRSLKSGV 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ DH+    L ++++K ++LDEADEMLD+GFR+DIE IL+  P++R+ ++F
Sbjct: 152 HIVIGTPGRVMDHMERNTLKLNNVKMMILDEADEMLDMGFREDIESILEEMPEERQTILF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  + + +QKD V V +  +   + +I+     V    +   +  ++  +  K
Sbjct: 212 SATMSKPIMQITQKFQKDPVLVKVVKKELTNVNIEQVYFEVKSKAKVEVMCRLIDMYDLK 271

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC+T+  V    + L    +Q   L G+L Q +R+N +   R G   + +ATDVAA
Sbjct: 272 LLLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRAGTTNILVATDVAA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D++ VI+ ++  + E  +HR GRTGRAG+ G +   + ++ + R   +     V
Sbjct: 332 RGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSFVGRDEKYRFREIQTYTKV 391

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFL 421
            V     PS E I      R ++          D     D+L     A    E+I A  +
Sbjct: 392 KVEKGVIPSFEDIVGVRKARFIEQLQQTIQESKDLNLYDDLLTQLNHAGFSTEQIVAALV 451

Query: 422 R----IHRAGLCAPEEITPVSLVSGRDRFRD----------DSRAFKVGGGSRDNFKGSS 467
           +    + +               +GRD++ D          + R      G RD    SS
Sbjct: 452 KRSMGLEKNEFADQNLNLEDDRRNGRDKYADRGRGEGGGRFEDRRGGSRFGDRDERGNSS 511

Query: 468 WF--SLSVG----------------------------------SKQKAEARW-------L 484
            F      G                                     +   R        L
Sbjct: 512 RFGDRREGGDRGGSRFGDRRSDGGDRPRFNDRDRSGTGKPYFDRDDQRVPREREANMTRL 571

Query: 485 MPMLCRSSGINRQSI---------------GAIRVQPDLTFVEVSADGVDLLRRTVKLD- 528
           M  + R   +    I               G+I +    T+V+V  D  + +   ++ + 
Sbjct: 572 MVSIGRKDFVRPGDIVGAIAGEANIPGNSIGSIDIFDKFTYVDVPKDVANRVVDAMEGNT 631

Query: 529 -KGIQL 533
            KG ++
Sbjct: 632 IKGRRV 637


>gi|229020923|ref|ZP_04177614.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
 gi|229026894|ref|ZP_04183218.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228734397|gb|EEL85067.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1272]
 gi|228740374|gb|EEL90681.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH1273]
          Length = 481

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 150/538 (27%), Positives = 252/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L+++ LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    K L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               +EK     ++ K     +  G
Sbjct: 358 EEYIGFEIPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ +T+K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKTMKNTTIKGKQLKV 476


>gi|304403848|ref|ZP_07385510.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346826|gb|EFM12658.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 546

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 142/462 (30%), Positives = 238/462 (51%), Gaps = 15/462 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F    +   + +A++E G+   T +Q   +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MKTFAEFGLEPKVLQAITELGFEEATPIQSKSIPIALTGSDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +    DR       +AL + PTRELA+QV  E+  L    G+      GG  + R+ 
Sbjct: 61  INKIPVTEDRI------VALIMTPTRELAIQVAEEIGKLTRYKGLRSLPIYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + ++ ++ V+LDEADEMLD+GF +DI  IL   P 
Sbjct: 115 RALKKHPQIIIGTPGRLLDHINRKTIKLADVQTVILDEADEMLDMGFMEDITSILSMVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  LA+ +  +   V++  +      ID   + V    +  A+  +
Sbjct: 175 ERQTMLFSATMPPNIQRLAQTFLNNPEHVSVIPKQVSAPLIDQAYIEVHERQKFEALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AI+F  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V 
Sbjct: 235 IDMESPELAIIFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDNVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPRETDHLHF 354

Query: 359 LFREANVSVVWEPAPSV-EAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + +     +  +P PS+ EAI  +    A+R++   +  +    + K +   LL ++D  
Sbjct: 355 IEKVTRHKITRKPLPSIAEAIEGKQRVTAERLID--IVQNEGNQEYKGIAIHLLEQYDSV 412

Query: 415 KIAAGFLRIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKV 455
            + A  +++          E+TP   +  + R  D   + + 
Sbjct: 413 NLLAAAIKLLTGEKKDVNIELTPEDPIRAKKRRPDVRTSGRR 454


>gi|308068476|ref|YP_003870081.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus polymyxa
           E681]
 gi|305857755|gb|ADM69543.1| Probable RNA helicase exp9 (Exported protein 9) [Paenibacillus
           polymyxa E681]
          Length = 529

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 242/473 (51%), Gaps = 15/473 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   + +A++E G+   T +Q   +   L+ +D++  AQTG+GKT AFG+ L
Sbjct: 1   MTTFAEFDLEPKVIQAITELGFEEATPIQSQSIPIALQGRDMIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +   +++        AL +APTRELA+QV  E+E L    G+      GG  + R+ 
Sbjct: 61  INKISRSDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  +  VVLDEADEMLD+GF +DI+ IL   P 
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPD 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   I  LA+ + K+   V++  +      ID   + V    +  A+  +
Sbjct: 175 ERQTMLFSATMPANIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V 
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPE 414
           + R     +  +P P++    E   QRI+ + L L++++     + K +   +L ++D  
Sbjct: 355 IERVTRHRIPRKPLPTLAEALEGK-QRIIAERL-LEAVESGELNEYKGLAIQMLEQYDSV 412

Query: 415 KIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           ++ +  L++       A  E+TP   +  + R  D     +          G 
Sbjct: 413 QLLSAALKLMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGG 465


>gi|153940796|ref|YP_001391035.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|152936692|gb|ABS42190.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           Langeland]
 gi|295319091|gb|ADF99468.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum F str.
           230613]
          Length = 481

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 148/542 (27%), Positives = 252/542 (46%), Gaps = 69/542 (12%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +  
Sbjct: 5   TFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 65  KLELEEKD------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     V L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R    + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLRDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +     PS+E + +          +F ++I+   K  V     K          
Sbjct: 359 DYIEKEIPKRKEPSLEEVDKGKK-------IFEENIKNRIKTKVPKNNKKQ--------- 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                      ++IT + + +GR                                K+K  
Sbjct: 403 -----------KDITKIYISAGR--------------------------------KKKIR 419

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
              ++  +    GIN  +IG I +Q + ++V++     D++ +  +    KG +++    
Sbjct: 420 PGDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGDIVLKASEDMKIKGKKVRIQRA 479

Query: 539 EK 540
            K
Sbjct: 480 VK 481


>gi|665989|dbj|BAA11693.1| deaD [Bacillus subtilis]
          Length = 479

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 145/544 (26%), Positives = 252/544 (46%), Gaps = 69/544 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + ++      P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CELANWDENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + + +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++  +    +R    
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS E +  +        P FL  +    +   D        E++  
Sbjct: 355 IEEYIGFEIPKIEAPSQEEVARKK-------PEFLAKLNDRPESKKDK------SEELNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYL 536
             A   +  + +  G++   IG I +  + ++VE+       + + +K    KG QLK  
Sbjct: 416 IRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVN 475

Query: 537 GGEK 540
              K
Sbjct: 476 KANK 479


>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
 gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           antri DSM 16041]
          Length = 512

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 222/464 (47%), Gaps = 9/464 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+   GY   T +QE  +   L+ +DV+  AQTG+GKT AFGL +   +  +N
Sbjct: 22  LSQSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHVDTDN 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I+PTREL +Q   EL  L     V V V  GG  + R+ + L++   
Sbjct: 82  PNI------QALIISPTRELVIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKHHPQ 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI    + + H++ +VLDEADEML++GF +DIE I+  +P +R+ L+FS
Sbjct: 136 ILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEMLNMGFLEDIEAIIKETPAERQTLLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  + + +  D   V I ++      +D   V     ++ + +  ++       
Sbjct: 196 ATMPPEIKRIGEQFMTDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDL 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   +K L    +    + G+L+Q  R+  ++  + G   + +ATDVAAR
Sbjct: 256 TIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDRRTKIMKKFKHGDLDILVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G S+  +  N       + +   V 
Sbjct: 316 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGTSLTFVTPNEMEYLHEIEKLTRVR 375

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           ++    PS E   +          D L         K+  + LL  HD   + A  L  +
Sbjct: 376 MLPLKPPSAEEAFKGQVASAFNDIDELIAQDSTDRYKEAAEQLLESHDATDLVAALLN-N 434

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                A E    ++      R     +     GG+    + S  
Sbjct: 435 MTKEAASEVPVKITPERPLPRHHRGGKRTDYHGGNHYRHRDSRR 478


>gi|229188506|ref|ZP_04315550.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
 gi|228594969|gb|EEK52744.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           10876]
          Length = 528

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|229099881|ref|ZP_04230804.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
 gi|228683496|gb|EEL37451.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-29]
          Length = 481

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 149/538 (27%), Positives = 251/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KEFSNYALSKEIIRALTGLGYEHPTEVQGEVIPVALKKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVFRQLNRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG KG ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNKGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               +EK     ++ K     +  G
Sbjct: 358 EAYIGFEIPKAYAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKSADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      ++ +T+K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPIVLKTMKNTTIKGKQLKV 476


>gi|228924198|ref|ZP_04087469.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835416|gb|EEM80786.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 481

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 150/538 (27%), Positives = 250/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL +APTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLAPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAIDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|221311883|ref|ZP_03593730.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221316207|ref|ZP_03598012.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221321119|ref|ZP_03602413.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221325403|ref|ZP_03606697.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767828|ref|NP_391790.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|254763269|sp|P42305|DBPA_BACSU RecName: Full=ATP-dependent RNA helicase dbpA
 gi|225185456|emb|CAB15947.2| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 479

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 145/544 (26%), Positives = 252/544 (46%), Gaps = 69/544 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + ++      P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CELANWDENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + + +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++  +    +R    
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS E +  +        P FL  +    +   D        E++  
Sbjct: 355 IEEYIGFEIQKIEAPSQEEVARKK-------PEFLAKLNDRPESKKDK------SEELNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYL 536
             A   +  + +  G++   IG I +  + ++VE+       + + +K    KG QLK  
Sbjct: 416 IRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVN 475

Query: 537 GGEK 540
              K
Sbjct: 476 KANK 479


>gi|148379740|ref|YP_001254281.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           3502]
 gi|153931372|ref|YP_001384037.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. ATCC
           19397]
 gi|153936334|ref|YP_001387579.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A str. Hall]
 gi|148289224|emb|CAL83319.1| ATP-dependent RNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927416|gb|ABS32916.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932248|gb|ABS37747.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A str. Hall]
          Length = 481

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 147/542 (27%), Positives = 251/542 (46%), Gaps = 69/542 (12%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +  
Sbjct: 5   TFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 65  KLELEEKD------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + LN+  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   +  L K Y  +   +NI  EN     I+     V   D+   +  I+ 
Sbjct: 179 VTMLFSATIPEKVENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFYLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     + L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKHMKKKGLNAIGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +     PS E + +          +F ++I+   K  V     K          
Sbjct: 359 DYIEKEIPKRKEPSSEEVAKGKK-------IFEENIKNRIKTKVPKDNKKQ--------- 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                      ++IT + + +GR                                K+K  
Sbjct: 403 -----------KDITKIYISAGR--------------------------------KKKIR 419

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
              ++  +    GIN  +IG I +Q + ++V++     D++ +  +    KG +++    
Sbjct: 420 PGDIVGAITSIEGINVDNIGIIDIQDNHSYVDILERKGDIVLKASEDMKIKGKKVRIQRA 479

Query: 539 EK 540
            K
Sbjct: 480 VK 481


>gi|315924965|ref|ZP_07921182.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621864|gb|EFV01828.1| DEAD/DEAH family ATP-dependent RNA helicase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 550

 Score =  244 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 159/533 (29%), Positives = 269/533 (50%), Gaps = 26/533 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   Q I +A++  G+  +T++Q   +   L  KD++  +QTG+GKT+AF +  
Sbjct: 6   MK-FNTLAVDQRILDAVARMGFAEMTAIQAQAIPRLLAGKDIIGRSQTGTGKTLAFAIPA 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +     R      P  L + PTRELA+QV  E E L   + GV +A   GG S+ ++
Sbjct: 65  VQKVDPAAKR------PQVLILLPTRELALQVAGEFEKLLTCSEGVAIAAVFGGASMPKQ 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R  ++GA IVVGTPGR+ DH+R   L    ++ VVLDEADEMLD+GFR+DIE ILD   
Sbjct: 119 IRAFKSGAQIVVGTPGRIMDHLRRGTLRFDAMRMVVLDEADEMLDMGFREDIEAILDRVD 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +  +FSAT+   IT +A+ YQ+D   V IA +N   + I+ R   +    +  A+  
Sbjct: 179 HPVQTALFSATMPAPITKMAELYQRDPETVAIAPKNMVAAGIEERYYSIVDGQKFEALTR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  + A++FC+T+  V   T  L +  +    + G++ Q+ R   L+   +GR  +
Sbjct: 239 LLAVYRPRRALIFCNTKKYVDELTNALQDRGYSADKIHGDMRQEARLAVLRRFAEGRLAI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+++V + ++  N E  +HR GRTGRAG+ G+S+ +  +  Q R +
Sbjct: 299 LVATDVAARGIDVDDVDIVFNYDVPDNEEYYVHRIGRTGRAGKSGLSLTLARRRDQYRLK 358

Query: 358 RLFREANVSVVWEPAP-SVEAIRERDAQRILQD---PLFLDSIQGDEKKMVDVLLAKHDP 413
           ++ R     +        ++A ++R  +    D   P +L ++     +  ++       
Sbjct: 359 KITRYTRKPIEPAAIALRLDAFKDRFGEWTDDDSDMPRYLQAVDELAAQGFEMRY----- 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             +AA  LR H        +I  +         +   +  +    +  +   ++   + V
Sbjct: 414 --VAAVLLRAHLPFRHDDRDINLMLT-----GEKGTGKGIRRKRRTHFDPAETTKIFIGV 466

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K  A+ R ++  +C  SGI   ++G I +    T+  V +     + R + 
Sbjct: 467 GKKDGAKKRDVLGAICGESGIASDAVGEIAMYGHFTYAAVDSALAGKVVRKLN 519


>gi|291486518|dbj|BAI87593.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 479

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 146/544 (26%), Positives = 252/544 (46%), Gaps = 69/544 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + ++      P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CELADWDENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++  +    +R    
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS E +  +        P FL  +    +   D        E++  
Sbjct: 355 IEEYIGFEIQKIEAPSQEEVARKK-------PEFLAKLNDRPESKKDK------SEELNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYL 536
             A   +  + +  G++   IG I +  + ++VE+       + + +K    KG QLK  
Sbjct: 416 IRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVN 475

Query: 537 GGEK 540
              K
Sbjct: 476 KANK 479


>gi|218895359|ref|YP_002443770.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228906018|ref|ZP_04069910.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|228937529|ref|ZP_04100171.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970416|ref|ZP_04131071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228976986|ref|ZP_04137394.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|218543277|gb|ACK95671.1| DEAD/DEAH box helicase [Bacillus cereus G9842]
 gi|228782733|gb|EEM30903.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           Bt407]
 gi|228789302|gb|EEM37226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228822140|gb|EEM68126.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228853621|gb|EEM98386.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 200]
 gi|326938018|gb|AEA13914.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 529

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|75760678|ref|ZP_00740704.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898976|ref|ZP_04063254.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
 gi|74491828|gb|EAO55018.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228860669|gb|EEN05051.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           IBL 4222]
          Length = 521

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|228989414|ref|ZP_04149403.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
 gi|228770361|gb|EEM18936.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus pseudomycoides
           DSM 12442]
          Length = 528

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 248/474 (52%), Gaps = 21/474 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPE 414
           + +     +    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D  
Sbjct: 355 IEQTTKRKIDRMNAPTLDEALEGQ-QRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            + A  L++    +    + TP++L S        SR  K  GG+ + ++  + 
Sbjct: 413 TVVAAALKM----MTKEPDTTPIALTSEPPVV---SRGSKKRGGNGNGYRDGNR 459


>gi|228995609|ref|ZP_04155275.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
 gi|228764181|gb|EEM13062.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides
           Rock3-17]
          Length = 536

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 248/474 (52%), Gaps = 21/474 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPE 414
           + +     +    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D  
Sbjct: 355 IEQTTKRKIDRMNAPTLDEALEGQ-QRLIAEKL-QSTIESDNLAYYKRIAEEMLEENDSV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            + A  L++    +    + TP++L S        SR  K  GG+ + ++  + 
Sbjct: 413 TVVAAALKM----MTKEPDTTPIALTSEPPVV---SRGSKKRGGNGNGYRDGNR 459


>gi|229164405|ref|ZP_04292334.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
 gi|228619055|gb|EEK75952.1| ATP-dependent RNA helicase dbpA [Bacillus cereus R309803]
          Length = 481

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 150/538 (27%), Positives = 254/538 (47%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KNFSNYALNKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+KG ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK     ++ K     I  G
Sbjct: 358 ETYIGFAIPKAQAPSKEEVMKGKA-------------VFEEKIHAKPMIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK 
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGSLVLKVMRNTTIKGKQLKV 476


>gi|196036086|ref|ZP_03103486.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|195991253|gb|EDX55221.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
          Length = 481

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 150/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFVRQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  GI+ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGISAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|228961717|ref|ZP_04123322.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228797966|gb|EEM44974.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 481

 Score =  242 bits (618), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 147/538 (27%), Positives = 248/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+    +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFFYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEISKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|30023480|ref|NP_835111.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229130700|ref|ZP_04259653.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
 gi|29899041|gb|AAP12312.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228652717|gb|EEL08602.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-Cer4]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKLHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|118480482|ref|YP_897633.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045537|ref|ZP_03112768.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225867435|ref|YP_002752813.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|229187683|ref|ZP_04314819.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
 gi|118419707|gb|ABK88126.1| ATP-dependent RNA helicase DbpA [Bacillus thuringiensis str. Al
           Hakam]
 gi|196023744|gb|EDX62420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225790635|gb|ACO30852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228595751|gb|EEK53435.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BGSC 6E1]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 253/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   ++  R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMEDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|47568574|ref|ZP_00239273.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47554816|gb|EAL13168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 253/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMNDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I    +R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------VFEEKIHAKPTIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|229028084|ref|ZP_04184235.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
 gi|228733237|gb|EEL84068.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1271]
          Length = 527

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|297620018|ref|YP_003708123.1| DEAD/DEAH box helicase domain-containing protein [Methanococcus
           voltae A3]
 gi|297378995|gb|ADI37150.1| DEAD/DEAH box helicase domain protein [Methanococcus voltae A3]
          Length = 584

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 150/566 (26%), Positives = 259/566 (45%), Gaps = 42/566 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLL- 63
           NI + I E L E+G+   T +QE  +   L  + DV+  AQTG+GKT+AFG+ +   +  
Sbjct: 7   NISESIMERLDEKGFTEATQIQEKAIPIVLDTELDVVGQAQTGTGKTLAFGIPIIQKIQE 66

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E +      A  A+ + PTRELA+QV  E++ +     + +    GG S+ ++   L+
Sbjct: 67  KIEENGRKNKKAVKAIILTPTRELALQVHDEIDSVNKGNKLRLCTVYGGQSIEKQINKLR 126

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NG  IV+GTPGR+ DH+  + L ++ +  +VLDEADEML+LGF DD+E I+    +  R 
Sbjct: 127 NGVDIVIGTPGRVIDHLGRRTLKLNEIDFLVLDEADEMLNLGFIDDVEEIMSKCKEDCRK 186

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+  +I  L + +  +   + + S+       +     V   D+   +  I+   
Sbjct: 187 LLFSATLPKSIMELVELHMGEYETIRVKSKALTTELTEQIYYEVKEHDKFELLRRIIDKE 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VFC T+A V +  + L +  +   AL G+++Q++R  AL   +  +  + IATD
Sbjct: 247 PGFYGLVFCKTKADVDQLMRRLNDENYSSEALHGDMNQKQRELALSRFKSHKIDIMIATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ +L  VI+ ++  NPE  +HR GRTGRAG KG ++  +     RR + + + 
Sbjct: 307 VAARGIDINELTHVINYDIPQNPEAYVHRIGRTGRAGNKGTAITFVEPREFRRFKYIMKI 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL------------QDPLFLDSIQGDEKKMVDVLLAK 410
           +      E  P V  I E     I+            +D   L++ + +  ++VD L+  
Sbjct: 367 SKSDAKKEKIPDVTEIVELTKTNIIGKLKQLIQTENSEDSEDLENYEFENLEIVDELIEL 426

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD---------------------- 448
            D + I    +          +    +     R                           
Sbjct: 427 ADSKVIIDKLISQLFKEELNRKSYGRIGDYGSRKGNDGRDSRRDGRNDRDRRDGRRNDRD 486

Query: 449 -----DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIR 503
                D          R N  G S   +++GS    + R L+  +   S +++ +I  + 
Sbjct: 487 RNDRNDRNDRDRRDNRRRNNDGGSRLFVALGSMDNMDTRRLLRKVLEKSDVSKDNISEVN 546

Query: 504 VQPDLTFVEVSADGVDLLRRTVKLDK 529
           V  + +F+         +  + + ++
Sbjct: 547 VYRNFSFISADEKTAKQIVDSFRSER 572


>gi|228942602|ref|ZP_04105134.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228982168|ref|ZP_04142457.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228777520|gb|EEM25798.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis Bt407]
 gi|228817028|gb|EEM63121.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326943251|gb|AEA19147.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPIK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|170758858|ref|YP_001787102.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405847|gb|ACA54258.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/541 (27%), Positives = 253/541 (46%), Gaps = 69/541 (12%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P  L + PTRELA+Q+  E+  +     +      G   ++ ++RDL
Sbjct: 66  IELEEKE------PQVLVLTPTRELALQIKEEISSIALYRRLRCTAIFGKQPMNLQKRDL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR  DHI  + LN+  +K  VLDEADEML++GF D +E ++   PK R 
Sbjct: 120 KQRVHLVVGTPGRTLDHIERENLNLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRV 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+   +  I+  
Sbjct: 180 TMLFSATIPEKIENLCKKYMNNPENININPENITTGTINQCYYEVEDKDKFFLLQRIIYK 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  ++G  +  + T
Sbjct: 240 EVVDNSIIFCNTRERVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKEGEFQFLVCT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI + ++  V++ E+    E+ +HR GRTGRAG++G+++  I  N  R  + +  
Sbjct: 300 DVAARGIHIENISHVVNYEMPYEKESYVHRIGRTGRAGKEGVAITFIESNKVRFLKDIED 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS+E + +          +F ++I+   K  V     K           
Sbjct: 360 YIEKEIPKRKEPSLEEVAKGKK-------IFEENIKNRIKTKVPKDNKKQ---------- 402

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                     ++IT + + +GR                                K+K   
Sbjct: 403 ----------KDITKIYISAGR--------------------------------KKKIRP 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGE 539
             ++  +    GIN  +IG I +Q + ++V++     D++ +  +    KG +++     
Sbjct: 421 GDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGDIVLKASEDMKIKGKKVRIQRAV 480

Query: 540 K 540
           K
Sbjct: 481 K 481


>gi|30265472|ref|NP_847849.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47531039|ref|YP_022388.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188291|ref|YP_031544.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|65317435|ref|ZP_00390394.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872531|ref|ZP_02217164.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167636244|ref|ZP_02394547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167641411|ref|ZP_02399661.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170689199|ref|ZP_02880396.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170708677|ref|ZP_02899116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177651890|ref|ZP_02934473.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190568924|ref|ZP_03021826.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218906634|ref|YP_002454468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228930460|ref|ZP_04093460.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228949176|ref|ZP_04111444.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229124957|ref|ZP_04254131.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|229600530|ref|YP_002869663.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254687105|ref|ZP_05150963.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724112|ref|ZP_05185897.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254733618|ref|ZP_05191335.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254742162|ref|ZP_05199849.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254755928|ref|ZP_05207960.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254761640|ref|ZP_05213660.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|30260150|gb|AAP29335.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47506187|gb|AAT34863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49182218|gb|AAT57594.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|164711754|gb|EDR17298.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510586|gb|EDR85982.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167528359|gb|EDR91130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170126459|gb|EDS95347.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170666842|gb|EDT17608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172082594|gb|EDT67658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190559991|gb|EDV13974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|218536757|gb|ACK89155.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|228658458|gb|EEL14124.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 95/8201]
 gi|228810459|gb|EEM56812.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829179|gb|EEM74816.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229264938|gb|ACQ46575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|218233461|ref|YP_002370229.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|229153612|ref|ZP_04281789.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
 gi|218161418|gb|ACK61410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228629841|gb|EEK86493.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1550]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|168185061|ref|ZP_02619725.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226949024|ref|YP_002804115.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|237795191|ref|YP_002862743.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
 gi|182671882|gb|EDT83843.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum Bf]
 gi|226843804|gb|ACO86470.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum A2 str.
           Kyoto]
 gi|229262477|gb|ACQ53510.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum Ba4 str.
           657]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 147/541 (27%), Positives = 252/541 (46%), Gaps = 69/541 (12%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+L
Sbjct: 66  IELEEKD------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKREL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R 
Sbjct: 120 KQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRV 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+  
Sbjct: 180 TMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIYK 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  + G  +  + T
Sbjct: 240 EVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVCT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + +  
Sbjct: 300 DVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIED 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS+E + +          +F ++I+   K  V     K           
Sbjct: 360 YIEKEIPKRKEPSLEEVDKGKK-------VFEENIKNRIKTKVPKNNKKQ---------- 402

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                     ++IT + + +GR                                K+K   
Sbjct: 403 ----------KDITKIYISAGR--------------------------------KKKIRP 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGE 539
             ++  +    GIN  +IG I +Q + ++V++     D++ +  +    KG +++     
Sbjct: 421 GDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGDIVLKASEDMKIKGKKVRIQRAV 480

Query: 540 K 540
           K
Sbjct: 481 K 481


>gi|229112867|ref|ZP_04242398.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296505875|ref|YP_003667575.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|228670546|gb|EEL25859.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock1-15]
 gi|296326927|gb|ADH09855.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|229171082|ref|ZP_04298680.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
 gi|228612412|gb|EEK69636.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus MM3]
          Length = 530

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 135/449 (30%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPD 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|228911292|ref|ZP_04075096.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
 gi|228848310|gb|EEM93160.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis IBL 200]
          Length = 481

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 250/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y    + + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVTEEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 IIENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|162447297|ref|YP_001620429.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
 gi|161985404|gb|ABX81053.1| DEAD box ATP-dependent RNA helicase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/544 (27%), Positives = 261/544 (47%), Gaps = 19/544 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P       AL + G+   T +QE  +   +   D++  AQTG+GKT AFG+ +  
Sbjct: 4   LFNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIPMVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
                    +       L + PTREL  QV +E+ + +     + V   +GG S  ++ +
Sbjct: 64  K------TDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L    HI+V TPGR+ DHI    +++SH+  + LDEADEML +GF+DDIE IL ++P+ 
Sbjct: 118 ELDRKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPET 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  +AKNYQK+   + I +++     I     LV   ++ + +  +L
Sbjct: 178 RQTVLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +     AI+F +T+A   R T+ L +  F   AL G+L Q +R+  +   R  +  + +
Sbjct: 238 DFENPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+E++++ +L    E  +HR GRTGRAG+KG +   +    +R  + L
Sbjct: 298 ATDVAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDML 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ + + +   +           +      + + ++L+ +   +++ 
Sbjct: 358 AHYTKADIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQLL 417

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDNFKGS---SWFS 470
              L          E I  +   + R    +R  D  R            +GS     F+
Sbjct: 418 NYLLDSMLPTKKTYETIEIIPEKASRRSQDERGNDKGRKDSRSSRDASPARGSGQYVDFT 477

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-K 529
           L++G         L   + +  GI  ++IG IR   + T   +  D V  L    +++ K
Sbjct: 478 LNIGKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDSVRRLNAKKEVNYK 537

Query: 530 GIQL 533
           G ++
Sbjct: 538 GRKV 541


>gi|229074285|ref|ZP_04207329.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
 gi|229094946|ref|ZP_04225949.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|229113900|ref|ZP_04243333.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228669561|gb|EEL24970.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-3]
 gi|228688479|gb|EEL42354.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-29]
 gi|228708837|gb|EEL60966.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-18]
          Length = 529

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 243/480 (50%), Gaps = 32/480 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTRKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD----------------RFRDDSRAFKVGGGS 459
           + A  L++    +    + TP++L S                    +RD +R     G S
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDGRS 469


>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 535

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 142/453 (31%), Positives = 232/453 (51%), Gaps = 11/453 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F    +   + +A++E G+   T +Q+  +   +   D++  AQTG+GKT AFG+ L
Sbjct: 1   MKTFAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +    +R       +AL + PTRELA+QV  E+  L    G+      GG  + R+ 
Sbjct: 61  INKISINEERI------VALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P+
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  LA+ + K+   V + S+      I      V    +  A+  +
Sbjct: 175 ERQTLLFSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L +  +    L G+LSQ +R N ++  RDG   V 
Sbjct: 235 LDMESPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHLHF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI 416
           + +     +  +P PS+    E   +   +  L +   +   + K +   LL ++D   +
Sbjct: 355 IEKVTRQRISKKPLPSLAEAIEGKQRLTAERVLEIVQTEDFTEYKGIAIQLLEQYDSVHL 414

Query: 417 AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRD 448
            A  L++          E+TP   +  + R  D
Sbjct: 415 MAAALKLLTGEKKDVSVELTPEEPLRAKKRKPD 447


>gi|229072918|ref|ZP_04206114.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
 gi|228710164|gb|EEL62142.1| ATP-dependent RNA helicase dbpA [Bacillus cereus F65185]
          Length = 481

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 250/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y    + + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|310641357|ref|YP_003946115.1| dead/deah box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
 gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
           polymyxa SC2]
          Length = 525

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 240/472 (50%), Gaps = 13/472 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   + +A++E G+   T +Q   +   L+ KD++  AQTG+GKT AFG+ +
Sbjct: 1   MTTFAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +   +++        AL +APTRELA+QV  E+E L    G+      GG  + R+ 
Sbjct: 61  INKISKNDEKI------RALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  +  VVLDEADEMLD+GF +DI+ IL   P 
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPD 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  LA+ + KD   V++  +      ID   + V    +  A+  +
Sbjct: 175 ERQTMLFSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V 
Sbjct: 235 IDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEK 415
           + R     +  +P P++    E   QRI+ + L     +G   + K +   +L ++D  +
Sbjct: 355 IERVTRHRIPRKPLPTLAEALEGK-QRIIAERLLEVVEKGELNEYKGLAIQMLEQYDSVQ 413

Query: 416 IAAGFLRIHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           + +  L++       A  E+TP   +  + R  D     +          G 
Sbjct: 414 LLSAALKLMTGEKREASIELTPEDPIRAKRRKPDVRSGGRKPSNYSGRSNGG 465


>gi|229159401|ref|ZP_04287421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
 gi|228624068|gb|EEK80874.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus R309803]
          Length = 528

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 243/480 (50%), Gaps = 32/480 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD----------------RFRDDSRAFKVGGGS 459
           + A  L++    +    + TP++L S                    +RD +R     G S
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDGRS 469


>gi|218900583|ref|YP_002448994.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541686|gb|ACK94080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 481

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 147/538 (27%), Positives = 248/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEAIEDEKFSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 MIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EDYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|324329406|gb|ADY24666.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 481

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 149/536 (27%), Positives = 248/536 (46%), Gaps = 68/536 (12%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L
Sbjct: 66  VEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P KR 
Sbjct: 120 KQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRM 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++   
Sbjct: 180 TMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGVTTDKIEHVLFEVIEDEKLSLLKDVTTI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +AT
Sbjct: 240 ENPDSCIIFCRTQDNVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +  
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS E + +  A               +EK     ++ K     I  G +
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKA-------------AFEEKIHAKPIIKKDKNADINKGIM 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++  G                                              G K+K  A
Sbjct: 407 KLYFNG----------------------------------------------GKKKKIRA 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +  + +  GI  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 421 VDFVGTIAKIKGITAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
 gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST196]
          Length = 538

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 136/449 (30%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    D      A   + IAPTRELA+QVG EL  L     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKD------AVQGIVIAPTRELAIQVGEELYKLGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|212638043|ref|YP_002314563.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212559523|gb|ACJ32578.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 471

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 241/476 (50%), Gaps = 18/476 (3%)

Query: 1   MKI---FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           MK    F    +   + +A+S+ G+   T +Q A +   L+ +DV+  AQTG+GKT AFG
Sbjct: 1   MKTLVKFNEFGLSPELMKAVSKMGFEEATPIQAATIPLSLQNRDVIGQAQTGTGKTAAFG 60

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + L   +   ND      A  A+ +APTRELA+QV  EL  + +   V V    GG  + 
Sbjct: 61  IPLIEKIDMNND------AVQAIVVAPTRELAIQVSEELYKIGSTKRVRVLPIYGGQDIE 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ R L+   HI+VGTPGR+ DHI+ + L + H+  VVLDEADEML++GF +DIE IL  
Sbjct: 115 RQIRALKKHPHIIVGTPGRILDHIQRRTLRLQHVHTVVLDEADEMLNMGFVEDIEAILSH 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ L+FSAT+   I  +A+ +  +   V + ++     +I+   + +    + + +
Sbjct: 175 VPTERQTLLFSATMPEPIRRIAERFMNNPELVRVKAKEMTVPNIEQYYIEIQEKKKFDTL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G  
Sbjct: 235 TRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSI 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  +      +
Sbjct: 295 DILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGMAITFVTPREIGQ 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDP 413
              + +     +     P+++   E   +  ++  L           K+  + LL +HD 
Sbjct: 355 LHHIEKTTKRKMERMKPPTLDEALEGQQRAAIEKLLATIEHNNLAFYKRAAEELLEEHDS 414

Query: 414 EKIAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFR----DDSRAFKVGGGSRDNFK 464
             + A  +++  +     P ++T    +  +++ R       R      GS+   K
Sbjct: 415 VSLVAACIKMLTKEPDMTPVQLTEEPPLMKKEKKRQVQTRQRRNETRSRGSKTRTK 470


>gi|229181700|ref|ZP_04309023.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
 gi|228601733|gb|EEK59231.1| ATP-dependent RNA helicase dbpA [Bacillus cereus 172560W]
          Length = 481

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 149/538 (27%), Positives = 251/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKK
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y    + + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|227818223|ref|YP_002818232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|227005726|gb|ACP15469.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 481

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 251/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P  L + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQVLVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|229148341|ref|ZP_04276624.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
 gi|228635135|gb|EEK91682.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST24]
          Length = 481

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGLLVLKVMKTTTIKGKQLKV 476


>gi|52145260|ref|YP_086717.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51978729|gb|AAU20279.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 481

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKIMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|296329829|ref|ZP_06872313.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305676555|ref|YP_003868227.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152868|gb|EFG93733.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414799|gb|ADM39918.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 479

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 148/545 (27%), Positives = 256/545 (46%), Gaps = 71/545 (13%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + ++      P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CELADWDENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATSVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +H+VVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHMVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y ++   + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPEDIEKLSRQYMQNPQHIEIKAAGLTTKNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      ++I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSSIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++  +    +R    
Sbjct: 295 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIA 417
           +       +    APS E +  +        P FL        KM D   +K D  E++ 
Sbjct: 355 IEEYIGFEIQKIEAPSQEEVARKK-------PEFLA-------KMNDRPESKKDKSEELN 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              ++++  G                                              G K+
Sbjct: 401 KDIMKLYFNG----------------------------------------------GKKK 414

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
           K  A   +  + +  G++   IG I +  + ++VE+       + + +K    KG +LK 
Sbjct: 415 KIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKDTTVKGKKLKV 474

Query: 536 LGGEK 540
               K
Sbjct: 475 NKANK 479


>gi|321313476|ref|YP_004205763.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320019750|gb|ADV94736.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 479

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 149/545 (27%), Positives = 254/545 (46%), Gaps = 71/545 (13%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+N  I   I  AL   GY   T VQ++++   L  KD++V +QTGSGKT +FG+ L
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + ++      P AL + PTRELAVQV  ++  +     +      G  S  +++
Sbjct: 61  CELANWDENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +HIVVGTPGR+ DHI    L +  L  +V+DEADEML++GF + +E I+   P 
Sbjct: 115 AELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPT 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   I  L++ Y +    + I +      +I++  + V   ++ + + ++
Sbjct: 175 ERTTMLFSATLPQDIEKLSRQYMQKPEHIEIKAAGLTTRNIEHAVIQVREENKFSLLKDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V++ T  L +  +    + G + Q++R + +   + G  R  
Sbjct: 235 LMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ +L    E+ +HR+GRTGRAG KG ++  +    +R    
Sbjct: 295 VATDVAARGIDIENISLVINYDLPVEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIA 417
           +       +    APS E +  +        P FL        KM D   +K D  E++ 
Sbjct: 355 IEEYIGFEIQKIEAPSQEEVARKK-------PEFLA-------KMNDRPESKKDKSEELN 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              ++++  G                                              G K+
Sbjct: 401 KDIMKLYFNG----------------------------------------------GKKK 414

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
           K  A   +  + +  G++   IG I +  + ++VE+       + + +K    KG +LK 
Sbjct: 415 KIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKKLKV 474

Query: 536 LGGEK 540
               K
Sbjct: 475 NKANK 479


>gi|294497056|ref|YP_003560756.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294346993|gb|ADE67322.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 503

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 141/481 (29%), Positives = 235/481 (48%), Gaps = 19/481 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+++   Q + +A+S+ G+   T +Q   +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +           A   L IAPTRELAVQV  EL  +     V V    GG  + R+ 
Sbjct: 61  IEKVDVN------VDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  + L +  +  V+LDEADEML++GF +DIE IL + P+
Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVKAKEVTMPNITQYYLEVQEKRKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEK 415
           + R     +     P+++   E   QRI  D L     QG     K++ + LL +HD   
Sbjct: 355 IERTTKRKMERLTPPTLDEAMEGQ-QRIAADKLTESVTQGNLSYYKQLAEELLEEHDSVS 413

Query: 416 IAAGFLRIHRA-------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           + A  +++           L A   +      + R      SR+       ++    S  
Sbjct: 414 LVAAAIKLFTKEPNESPIQLTAEPPVIAKGDKNKRGNGGGRSRSNSKNYSQQNRRGNSKR 473

Query: 469 F 469
           F
Sbjct: 474 F 474


>gi|315648503|ref|ZP_07901602.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315276197|gb|EFU39543.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 536

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 148/463 (31%), Positives = 237/463 (51%), Gaps = 14/463 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F +  +   + +A++E G+   T +Q   +   L  +D++  AQTG+GKT AFGL L
Sbjct: 1   MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGRDMIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E +R       ++L + PTRELA+QV  E+  L    G+      GG  + R+ 
Sbjct: 61  IHKIAKEEERI------VSLIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P+
Sbjct: 115 RALKKKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  LA  + KD   V++  ++     ID   + V    +  A+  +
Sbjct: 175 ERQTLLFSATMPANIQKLASQFLKDPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V 
Sbjct: 235 LDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEK 415
           + R     +  +P P++    E   QRI+ + +     QG   + K +   LL ++D  +
Sbjct: 355 IERVTRHRIPRKPLPTIAEAIEGK-QRIIAERVLEIIEQGELTEYKGLAIQLLEQYDSVQ 413

Query: 416 IAAGFLRIHRAGLCAPEEI--TPVSLVSGRDRFRDDSRAFKVG 456
           + A  ++I         +I  TP   +  + R  D     K  
Sbjct: 414 LLAAAMKILTGDKKEASDIHLTPEDPIRAKRRKPDIRSGRKPS 456


>gi|104773512|ref|YP_618492.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513507|ref|YP_812413.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103422593|emb|CAI97196.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092822|gb|ABJ57975.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125143|gb|ADY84473.1| ATP-dependent RNA helicase-like protein [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 483

 Score =  241 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 147/471 (31%), Positives = 222/471 (47%), Gaps = 6/471 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKLDLDKQ----EQAIQAIVIEPTRELAIQTQEELFRLGRDEKAKVQVVYGGADIGRQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+    I+VGTPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  +
Sbjct: 117 DLKKVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  L + +  D   V I ++      ID   V V  +++ + +  ++
Sbjct: 177 DQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLI 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 360 FREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                  +     P+  +A   +  Q +L+    L           + LL  +  E IAA
Sbjct: 357 EDLTKKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAA 416

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             L+           ITP +    R +                NFKG   F
Sbjct: 417 ALLKELSNDSEVKVTITPENPHPYRGKHSGGRGRGSRSRSGNKNFKGKRNF 467


>gi|86130260|ref|ZP_01048860.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85818935|gb|EAQ40094.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 638

 Score =  241 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 132/530 (24%), Positives = 252/530 (47%), Gaps = 25/530 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            F+ +     + +A+++ G+   + +QE  +   L E +D++  AQTG+GKT AFG  L 
Sbjct: 2   TFDQLGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             +       + +     L IAPTREL +Q+  E++       GV V    GG ++  + 
Sbjct: 62  QNID------ASSKTTQGLIIAPTRELCLQITNEMKLYAKHIKGVRVVAVYGGSNIQEQA 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R++  GA IVV TPGR+ D +R + ++I+ L   VLDEADEML++GF +DI  IL  +P+
Sbjct: 116 REISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +   +FSAT+   +  +AK +  D + + +  +N    ++ +   +V   DR  A+  +
Sbjct: 176 DKLTWLFSATMPREVARIAKEFMHDPLEITVGHKNEGAKNVSHEYYVVHTRDRYQALKRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ 
Sbjct: 236 SDANPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQML 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ ++
Sbjct: 296 VATDVAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKTGTSMVIVTKSEMRKIKQ 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L +        +  P  + I +     +    +   ++         ++ +L  +  E++
Sbjct: 356 LEKILAKKFDQKTIPDGKEITQVQLFHLANSINNTEINQEIDAYLPEIEEVLKDNTKEEL 415

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +         +       +    F+++S               ++ + ++VG K
Sbjct: 416 IKKVFSVEFTRFFNYYKKAKDLNQNAVAAFKEES-------------GDTTRYFINVGRK 462

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
              +   L   L   +G+ +  I  +  +   +F     +  + +    +
Sbjct: 463 DDFDWMKLKDFLKEMTGLGQDGIYRVDCKDAFSFFNTDTEHKEKVLALFE 512


>gi|228918066|ref|ZP_04081594.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841546|gb|EEM86662.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 481

 Score =  241 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 251/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY   T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYERPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EVYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|294340821|emb|CAZ89216.1| Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Thiomonas sp. 3As]
          Length = 666

 Score =  241 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 144/490 (29%), Positives = 240/490 (48%), Gaps = 18/490 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +AL + GY   + +Q A + P L  +DVL  AQTG+GKT AF L + + +    
Sbjct: 14  LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDCN- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A    AL +APTRELA+QV        A       +   GG S   +   L+ GA
Sbjct: 73  -----ARHTQALVLAPTRELAIQVAEAFARYAAHLPGFNVLPIYGGQSYVPQLASLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEADEML +GF DD+E IL  +P +R++ +F
Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y +D   + I +     + I  R  +V+   + +A+  IL     +
Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + LA   F   AL+G++ Q  R   +Q ++DG+  + +ATDVAA
Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +     + R    
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHD--PEKIAAGFL 421
            +     PS EA+ +    R ++        +G  D +++V+    + D    +IAA   
Sbjct: 368 PITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIAAALA 427

Query: 422 RIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS--- 475
           R+ +     L  P      +  +  +            G      + +      V +   
Sbjct: 428 RMVQGNKPLLMRPGSEPSYNADTREESRAPRREREPREGREPRAPRPARATREEVPAARA 487

Query: 476 -KQKAEARWL 484
            +++A+ R L
Sbjct: 488 PRERAKPRDL 497



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L   R    A     P    S       +  A      S   F+    + + VG     E
Sbjct: 504 LMQAREAADAAPHSAPREAASAEHPAHSERTARGPHTASDVRFE---TYRVEVGRDHGVE 560

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYL 536
            R L+  +   +G+  + IG I ++ D +FVE+      D    L++T    + +QL   
Sbjct: 561 VRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKDVFRTLQKTWVSGRQLQLTKA 620

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
              +   R   ++   ++    G T    + + A 
Sbjct: 621 EPVRDTARERPATRAPARRFDSGDTSPAPKRRAAP 655


>gi|42784637|ref|NP_981884.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42740569|gb|AAS44492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 481

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 246/536 (45%), Gaps = 68/536 (12%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L
Sbjct: 66  VEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R 
Sbjct: 120 KQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRM 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++   
Sbjct: 180 TMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKFSLLKDVTTI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +AT
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +  
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS E + +  A               +EK     ++ K     I  G +
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKA-------------AFEEKIHAKPIIKKDKNADINKGIM 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++  G                                              G K+K  A
Sbjct: 407 KLYFNG----------------------------------------------GKKKKIRA 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 421 VDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|168180353|ref|ZP_02615017.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
 gi|182668688|gb|EDT80666.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum NCTC 2916]
          Length = 481

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 146/541 (26%), Positives = 252/541 (46%), Gaps = 69/541 (12%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  +   I ++L   GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +   
Sbjct: 6   FENYELSDEILKSLGRLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPICEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+L
Sbjct: 66  IELEEKD------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKREL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R 
Sbjct: 120 KQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRV 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+  
Sbjct: 180 TMLFSATIPEKIENLCKKYMNNPQNININPENITTGTINQCYYEVEDKDKFSLLQKIIYK 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N+I+FC+TR  V    K + +  F  + L G + Q++R   ++  + G  +  + T
Sbjct: 240 EVVDNSIIFCNTREKVDEVLKHMKKKGFNAIGLHGGMEQKDRLETMKKFKQGEFQFLVCT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + +  
Sbjct: 300 DVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIED 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS+E + +          +F ++I+   K  V     K           
Sbjct: 360 YIEKEIPKRKEPSLEEVDKGKK-------VFEENIKNRIKTKVPKNNKKQ---------- 402

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                     ++IT + + +GR                                K+K   
Sbjct: 403 ----------KDITKIYISAGR--------------------------------KKKIRP 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGE 539
             ++  +    GIN  +IG I +Q + ++V++     +++ +  +    KG +++     
Sbjct: 421 GDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGNIVLKASEDMKIKGKKVRIQRAV 480

Query: 540 K 540
           K
Sbjct: 481 K 481


>gi|295702421|ref|YP_003595496.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800080|gb|ADF37146.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 503

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 141/481 (29%), Positives = 235/481 (48%), Gaps = 19/481 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+++   Q + +A+S+ G+   T +Q   +   L   D++  AQTG+GKT AFG+ L
Sbjct: 1   MALFQDLGLSQQLNKAVSKMGFEEATPIQSETIPLALEGHDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +           A   L IAPTRELAVQV  EL  +     V V    GG  + R+ 
Sbjct: 61  IEKVDVN------VDAIQGLIIAPTRELAVQVSEELYKIGQTKRVRVLSIYGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  + L +  +  V+LDEADEML++GF +DIE IL + P+
Sbjct: 115 RALKKHPHIIVGTPGRMLDHINRRTLRLQDVHTVILDEADEMLNMGFIEDIEKILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 NHQTLLFSATMPTPIRRIAEKFMNEPKVVKVQAKEVTMPNITQYYLEVQEKRKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDMQSPELAIIFGRTKRRVDELSEALNMRGYSAQGIHGDLTQSKRLSVLRQFKEGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGAAMTFVTPRETGQLHN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEK 415
           + R     +     P+++   E   QRI  D L     QG     K++ + LL +HD   
Sbjct: 355 IERTTKRKMERLTPPTLDEAMEGQ-QRIAADKLTESVTQGNLSYYKQLAEELLEEHDSVS 413

Query: 416 IAAGFLRIHRA-------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           + A  +++           L A   +      + R      SR+       ++    S  
Sbjct: 414 LVAAAIKLFTKEPNESPIQLTAEPPVIAKGDKNKRGNGGGRSRSNSKNYSQQNRRGNSKR 473

Query: 469 F 469
           F
Sbjct: 474 F 474


>gi|300118846|ref|ZP_07056566.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
 gi|298723814|gb|EFI64536.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           cereus SJ1]
          Length = 481

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KGFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|301056918|ref|YP_003795129.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300379087|gb|ADK07991.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 481

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 251/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL   GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALIGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKSADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|206970279|ref|ZP_03231232.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206734856|gb|EDZ52025.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 481

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 248/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   I  AL+  GY + T VQ  ++   L +KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSTEIVRALTGLGYNHPTEVQGEVIPVALEKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y    + + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPIHIEIKAAGITTDKIEHTLFEVIEDEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     PS E + +  A               +EK     ++ K     I  G
Sbjct: 358 EEYIGFEIPKAIGPSKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
 gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
 gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
           2048]
          Length = 538

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 134/449 (29%), Positives = 236/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTNKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMDAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|229015638|ref|ZP_04172628.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
 gi|229021830|ref|ZP_04178406.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228739470|gb|EEL89890.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1272]
 gi|228745658|gb|EEL95670.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH1273]
          Length = 530

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 243/480 (50%), Gaps = 32/480 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSESLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTRKE------AVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     V    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKVDRMEAPTLDEALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD----------------RFRDDSRAFKVGGGS 459
           + A  L++    +    + TP++L S                    +RD +R     G S
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPPVVSRGGGSKKRGGNGGGYRDGNRNRSRDGRS 469


>gi|170755466|ref|YP_001781330.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum B1 str.
           Okra]
 gi|169120678|gb|ACA44514.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B1 str.
           Okra]
          Length = 481

 Score =  240 bits (612), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 147/542 (27%), Positives = 251/542 (46%), Gaps = 69/542 (12%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +  
Sbjct: 5   TFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 65  KLELEEKD------PQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + L++  +K  VLDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   D+ + +  I+ 
Sbjct: 179 VTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +     V L G + Q++R   ++  ++G  +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N     E + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +     PS E + +          +F ++I+   K  V     K          
Sbjct: 359 DYIEKEIPKRKEPSSEEVDKGKK-------IFEENIKNRIKTKVPKNNKKQ--------- 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                      ++IT + + +GR                                K+K  
Sbjct: 403 -----------KDITKIYISAGR--------------------------------KKKIR 419

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
              ++  +    GIN  +IG I +Q + ++V++     +++ +  +    KG +++    
Sbjct: 420 PGDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGNIVLKASEDMKIKGKKVRIQRA 479

Query: 539 EK 540
            K
Sbjct: 480 VK 481


>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
 gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
 gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 03V1-b]
 gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
           LactinV 01V1-a]
 gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2053A-b]
 gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2052A-d]
 gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
           3008A-a]
 gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           143-D]
 gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
           60-B]
 gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
           1401G]
          Length = 487

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 241/475 (50%), Gaps = 14/475 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL  + +         AL I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QTLDKKQE------GIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+VGTPGRL DH++ + +N+SHLK V+LDEADEMLD+GF  DIE IL  +   
Sbjct: 115 SLKQVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEMLDMGFIQDIESILTFASND 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I S+    + ID   V +  +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + ++VF  T+  V   T+      +    + G+L+Q +R + L+  + G+  + +
Sbjct: 235 DVQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMS+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R     +     PS +   +     A + +Q+   LDS      K  + LL  +    +
Sbjct: 355 ERLTRKKMTPLRPPSDKEAFDGQLSIANKKIQE--LLDSDLTKYTKEAEKLLENNSALDL 412

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            A  L+ + +       EITP   +  ++R R +++ FK    S D  +      
Sbjct: 413 VAALLKDMAKDAEQVKVEITPEKPLPFKNR-RGNTQNFKRRYRSDDRDRNIKRHR 466


>gi|217962948|ref|YP_002341526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229142204|ref|ZP_04270728.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
 gi|217066069|gb|ACJ80319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228641222|gb|EEK97529.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST26]
          Length = 481

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 246/536 (45%), Gaps = 68/536 (12%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L
Sbjct: 66  VEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R 
Sbjct: 120 KQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRM 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++   
Sbjct: 180 TMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +AT
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +  
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS E + +  A               +EK     ++ K     I  G +
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKA-------------AFEEKIHAKPIIKKDKNADINKGIM 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++  G                                              G K+K  A
Sbjct: 407 KLYFNG----------------------------------------------GKKKKIRA 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 421 VDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|222098932|ref|YP_002532990.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|229199584|ref|ZP_04326245.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
 gi|221242991|gb|ACM15701.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|228583989|gb|EEK42146.1| ATP-dependent RNA helicase dbpA [Bacillus cereus m1293]
          Length = 481

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 245/536 (45%), Gaps = 68/536 (12%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGKVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L
Sbjct: 66  VEWAENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R 
Sbjct: 120 KQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRM 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++   
Sbjct: 180 TMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEAIEDEKLSLLKDVTTI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +AT
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +  
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS E + +  A               +EK     ++ K     I  G +
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKA-------------AFEEKIHAKPIIKKDKNADINKGIM 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++  G                                              G K+K  A
Sbjct: 407 KLYFNG----------------------------------------------GKKKKIRA 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +  + +  GI  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 421 VDFVGTIAKIKGITAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|229094565|ref|ZP_04225632.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
 gi|228688812|gb|EEL42643.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-42]
          Length = 481

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KGFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPSKEEVMKGKA-------------AFEEKIQAKPTIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|251796764|ref|YP_003011495.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247544390|gb|ACT01409.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 477

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 152/542 (28%), Positives = 253/542 (46%), Gaps = 67/542 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +F+ + + I  ALS  G+   T VQ  ++   L ++D++V +QTGSGKT A+G+ L  
Sbjct: 1   MTVFKELSKEITTALSSLGFDTPTEVQAKVIPIALEKRDLVVKSQTGSGKTAAYGIPLCE 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    ++      P AL + PTRELAVQV  ++  +     +      G    H +R +
Sbjct: 61  LVEWNENK------PQALILTPTRELAVQVTEDITNIGRFKRIKATALYGKSPFHIQRAE 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR+ DHI    L +  L  +V+DEADEML++GF + ++ I+ + PK R
Sbjct: 115 LKQRTHMVVGTPGRVLDHIERGTLALDKLAYLVIDEADEMLNMGFIEQVQSIIQALPKGR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT    +  L++ Y     ++ I +     + I++  + V  +D+   + ++L 
Sbjct: 175 VTMLFSATFPEDVAKLSRRYMDSPAQIEIQASGLTTATIEHSLIEVKEADKLALLQDVLV 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+FC T+ +V +  + +AE  +    + G L Q+ER   +   R G+ R  IA
Sbjct: 235 VENPDSCIIFCRTQENVDKLFRSMAELDYPCDRIHGGLEQEERFEVMNAFRRGQFRYLIA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++  +  N  +R   + 
Sbjct: 295 TDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKNGKAITFLAPNDGKRLAEIE 354

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                S+    APS EA+  R  +              + K  V V L K   E++    
Sbjct: 355 DYIGFSIPRVQAPSEEAVNNRLEE-------------FERKINVGVELKKDRREQLNKQI 401

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           ++++  G                                              G K+K  
Sbjct: 402 MKLNFNG----------------------------------------------GKKKKFR 415

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
           A   +  + +  G+    IG I +   +T VE+      L+   +K    KG QLK   G
Sbjct: 416 AVDFVGTIAKLEGVTADDIGIITILDHVTDVEILNGKGSLVLELMKNTTIKGKQLKVRRG 475

Query: 539 EK 540
            K
Sbjct: 476 NK 477


>gi|153953072|ref|YP_001393837.1| ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219853723|ref|YP_002470845.1| hypothetical protein CKR_0380 [Clostridium kluyveri NBRC 12016]
 gi|146345953|gb|EDK32489.1| Predicted ATP-dependent RNA helicase [Clostridium kluyveri DSM 555]
 gi|219567447|dbj|BAH05431.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 481

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 128/542 (23%), Positives = 237/542 (43%), Gaps = 68/542 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   I E+L + GY + + VQE ++   L+ KD++V +QTGSGKT AF + +  
Sbjct: 6   FKDFQ-LSNTILESLQKLGYNSPSEVQEKVIPLILKNKDIIVKSQTGSGKTAAFAIPICE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E         P AL + PTRELA+Q+  +  ++     +      G   +  + + 
Sbjct: 65  KIEIEEKN------PQALVLTPTRELALQIKEDFSYIGRLKKINCTAVFGKEPISLQIKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+V GTPGR+ DHI    L +  +K +V+DEADEML  GF + +E ++ S PK R
Sbjct: 119 LKQRVHVVTGTPGRILDHIERNTLVLEKIKYLVIDEADEMLSRGFMEQVESVIGSLPKNR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             L+FSATI   I  L   Y ++ + + +  E+     I      +    + + +  I+ 
Sbjct: 179 TTLLFSATIPDEILKLCNVYMENPLNIEVQCESSVKDRITQMYYKIEAPYKFSLLNKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                ++++FC T+ +V      +    +   AL G + Q ER + ++  + G     I 
Sbjct: 239 TERPDSSMIFCRTKKNVDDLVLQMKARKYSCEALHGGMLQNERIDKIESFKRGEFTFLIC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ ++  +I+ ++    EN +HR GRTGR    G ++  +        +++ 
Sbjct: 299 TDIAARGIDVENITHIINYDIPMERENYIHRIGRTGRFTSNGTAITFVTPKEYLYLKKIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              ++++     PS+E +            LF + ++   K+  D               
Sbjct: 359 EYFHITIKEGSIPSLEEVETGKK-------LFYEKLKSAPKRKED--------------- 396

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                                 S    +  +   +S G ++K  
Sbjct: 397 -------------------------------------KSTKFNRDITKIYISAGKRKKIR 419

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQLKYLGG 538
            R +   +    G+N + IG I ++ + ++V++     +++   +  K  KG  ++    
Sbjct: 420 PRDVAGTISSIPGVNPEDIGIIDIKDNFSYVDILFGKAEMVLEGLQHKTIKGKTIRAEKA 479

Query: 539 EK 540
           +K
Sbjct: 480 QK 481


>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
 gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
          Length = 509

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 228/469 (48%), Gaps = 11/469 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +  A+ E G+   T +Q   +   L  KDV   AQTG+GKT AFGL L 
Sbjct: 1   MKFNEMNLSKPLLRAIEEMGFEEATPIQAQTIPMALEGKDVFGQAQTGTGKTAAFGLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              AL I PTRELAVQ G EL  L    G+      GG S+  + +
Sbjct: 61  EKVHETG-------GVQALIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIK 113

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    +V+GTPGR+ D I+   L +++++ +VLDEADEML +GF +DIE I+   P +
Sbjct: 114 LLKKNPPVVIGTPGRILDLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRELPTE 173

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +A N+  D   V++ ++      ID         ++ + +   +
Sbjct: 174 RQTLLFSATVPQEIKRIADNFMNDPATVHVKTKQMTADLIDQYYSRCKDYEKFDLLTRFI 233

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V    + L E  +    + G+LSQ +R   L+  ++G+  + +
Sbjct: 234 DVQNPELSIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNGKLDILV 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GMSV  +  N       +
Sbjct: 294 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGMSVTFVTSNEMSYLRTI 353

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +         +++    L  ++  G  ++ +  L   +  ++IA
Sbjct: 354 EDLTKKQMSALRPPTTQEALSGQLSNVVEVVKELIEVEDTGMYQEAITYLSENYTEDEIA 413

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              +R + +       EITP   +  R++      A     G   +  G
Sbjct: 414 LALVRSLVKDPSSVKVEITPERPLPNRNKRNFHRNASNRNAGGNRDRNG 462


>gi|261408394|ref|YP_003244635.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|329929405|ref|ZP_08283153.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|261284857|gb|ACX66828.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
 gi|328936492|gb|EGG32937.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 533

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 149/462 (32%), Positives = 237/462 (51%), Gaps = 14/462 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F +  +   + +A++E G+   T +Q   +   L  KD++  AQTG+GKT AFGL L
Sbjct: 1   MKNFADFGLEPRVLQAITELGFEEATPIQSQSIPIALTGKDMIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E +R       +AL + PTRELA+QV  E+  L    G+      GG  + R+ 
Sbjct: 61  IHKIAKEEERI------VALIMTPTRELAIQVAEEIGKLSRFKGIRSLAIYGGQDIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I++GTPGRL DHI  K + +  ++ VVLDEADEMLD+GF +DI+ IL   P+
Sbjct: 115 RALKRKPQIIIGTPGRLLDHINRKTIRLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  LA  + K+   V++  ++     ID   + V    +  A+  +
Sbjct: 175 ERQTLLFSATMPANIQKLASQFLKEPEHVSVIPKHVSAPLIDQAYIEVPERQKFEALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L +  +    L G+LSQ +R   ++  RDG   V 
Sbjct: 235 LDMESPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQHQRDTVMRKFRDGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ +L  +PE+ +HR GRTGRAG++G +   +          
Sbjct: 295 VATDVAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLYF 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG---DEKKMVDVLLAKHDPEK 415
           + R     +  +P P++    E   QRI+ + +     QG   + K +   LL ++D  +
Sbjct: 355 IERVTRHRIPRKPLPTIAEAIEGK-QRIIAERVLEIIEQGELTEYKGLAIQLLEQYDSVQ 413

Query: 416 IAAGFLRIHRAGLCAPEEI--TPVSLVSGRDRFRDDSRAFKV 455
           + A  ++I         +I  TP   +  + R  D     K 
Sbjct: 414 LLAAAMKILTGDKKEASDIHLTPEDPIRAKRRKPDIRNGRKP 455


>gi|206975837|ref|ZP_03236748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|206745931|gb|EDZ57327.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
          Length = 481

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 245/536 (45%), Gaps = 68/536 (12%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   
Sbjct: 6   FFEYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L
Sbjct: 66  VEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P  R 
Sbjct: 120 KQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRM 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L++ Y      + I         I++        ++ + + ++   
Sbjct: 180 TMLFSATLPEDVERLSRTYMNAPTHIEIKVAGITTDKIEHTLFEAIEDEKLSLLKDVTTI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +AT
Sbjct: 240 ENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +  
Sbjct: 300 DVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEIEE 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +     PS E + +  A               +EK     ++ K     I  G +
Sbjct: 360 YIGFEIPKAIGPSKEEVMKGKA-------------AFEEKIHAKPIIKKDKNADINKGIM 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +++  G                                              G K+K  A
Sbjct: 407 KLYFNG----------------------------------------------GKKKKIRA 420

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 421 VDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|296136685|ref|YP_003643927.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295796807|gb|ADG31597.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 666

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 142/449 (31%), Positives = 231/449 (51%), Gaps = 13/449 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +AL + GY   + +Q A + P L  +DVL  AQTG+GKT AF L + + +    
Sbjct: 14  LPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAAFALPILAKIDCN- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A    AL +APTRELA+QV                +   GG S   +   L+ GA
Sbjct: 73  -----ARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQLASLKRGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEADEML +GF DD+E IL  +P +R++ +F
Sbjct: 128 HVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPPQRQVALF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ Y +D   + I +     + I  R  +V+   + +A+  IL     +
Sbjct: 188 SATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRILEVEPFE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     + LA   F   AL+G++ Q  R   +Q ++DG+  + +ATDVAA
Sbjct: 248 GMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDILVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++ ++ E+ +HR GRTGRAGR G ++  +    +     + R    
Sbjct: 308 RGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRAIERATRQ 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHD--PEKIAAGFL 421
            +     PS EA+ +    R ++        +G  D +++V+    + D    +IAA   
Sbjct: 368 PITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAIEIAAALA 427

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
           R+ +     P  + P S  S     R++S
Sbjct: 428 RMVQG--NKPLLMRPGSEPSYNADTREES 454



 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 7/155 (4%)

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L   R    A     P    S       +  A      S   F+    + + VG     E
Sbjct: 504 LMQAREAADAAPHSAPREAASAEHPAHSERTARGPHTASDVRFE---TYRVEVGRDHGVE 560

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYL 536
            R L+  +   +G+  + IG I ++ D +FVE+      D    L++T    + +QL   
Sbjct: 561 VRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKDVFRTLQKTWVSGRQLQLTKA 620

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
              +   R   ++   ++    G T    + + A 
Sbjct: 621 EPVRDTARERPATRAPARRFDSGDTSPAPKRRAAP 655


>gi|148543481|ref|YP_001270851.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184152890|ref|YP_001841231.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363631|ref|ZP_03847746.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227544701|ref|ZP_03974750.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300909057|ref|ZP_07126520.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|325681826|ref|ZP_08161345.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
 gi|148530515|gb|ABQ82514.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224234|dbj|BAG24751.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071342|gb|EEI09650.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           MM2-3]
 gi|227185302|gb|EEI65373.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus reuteri
           CF48-3A]
 gi|300894464|gb|EFK87822.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri SD2112]
 gi|324978917|gb|EGC15865.1| ATP-dependent RNA helicase DeaD [Lactobacillus reuteri MM4-1A]
          Length = 498

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 142/482 (29%), Positives = 228/482 (47%), Gaps = 12/482 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  EN          A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ +
Sbjct: 61  ENVDTENLNI------QAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  
Sbjct: 115 SLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   +  D   V I ++      +D   +     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   +K L    +    + G+L+Q +RS  +   ++    + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ E   +          D L         ++  + LL  H+   + 
Sbjct: 355 EKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLV 414

Query: 418 AGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKGSSWFSLSVG 474
           A  L      A    P +ITP   +  R++  + +       GG+    K         G
Sbjct: 415 AALLNNMTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGGG 474

Query: 475 SK 476
            +
Sbjct: 475 HR 476


>gi|229159014|ref|ZP_04287070.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
 gi|228624433|gb|EEK81204.1| ATP-dependent RNA helicase dbpA [Bacillus cereus ATCC 4342]
          Length = 481

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I    +R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    AP  E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPLKEEVMKGKA-------------VFEEKIHAKPTIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|323490311|ref|ZP_08095526.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
 gi|323395981|gb|EGA88812.1| ATP-dependent RNA helicase [Planococcus donghaensis MPA1U2]
          Length = 481

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 150/543 (27%), Positives = 247/543 (45%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   I + I +AL   GY   T VQE ++   L + D+ V +QTGSGKT AFG+ + 
Sbjct: 4   KKFDEYQISEQIVKALDGLGYTEPTEVQEKVIPVALSKTDLTVKSQTGSGKTAAFGIPIC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELA QV  ++  +     +  A   G      ++ 
Sbjct: 64  ELVDWEENK------PQALILTPTRELADQVKEDITNIGRFKRIKAAAVYGKQPFAYQQA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+VVGTPGR+ DHI    L +  ++ +VLDEADEML++GF + +E I++  PK+
Sbjct: 118 ELKQKCHVVVGTPGRVLDHIERGTLKLEQIEYLVLDEADEMLNMGFVEQVESIINKLPKQ 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L K Y  D   + IAS       ID+   +VA   + + + ++ 
Sbjct: 178 RTTMLFSATLPENVEKLQKKYMIDPQHIEIASTETLTDQIDHSLFVVAEQKKFSLLRDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L +H +    L G + Q++R+  +   + G  R  +
Sbjct: 238 IIENPDSCIIFCRTKDNVDFVMEQLEKHYYTCDKLHGGMLQEDRTAVMNEFKRGEFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HRSGRTGRAG+ G ++  +  N  +    +
Sbjct: 298 ATDVAARGIDIDSITHVINFDLPMEKESYVHRSGRTGRAGKTGKAISFVTPNEDKFLAEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APSV  +                 +   EK      L K+  E++   
Sbjct: 358 ESYIGFEIPHRTAPSVHEV-------------DTAMLAFTEKLESRPKLKKNKNEQVNKD 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L+++  G                                              G K+K 
Sbjct: 405 ILKLYFNG----------------------------------------------GKKKKL 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  L    G+  + IG I++Q  +T++++      ++ + +K    KG  LK   
Sbjct: 419 RAFDFVGTLTSIPGVTAEDIGIIKIQDTVTYIDILNGKGPMVLKAMKDKTVKGKTLKVHK 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|332293226|ref|YP_004431835.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171312|gb|AEE20567.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 644

 Score =  239 bits (610), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 132/527 (25%), Positives = 251/527 (47%), Gaps = 27/527 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            F+ +     + +A+++ G+   + +QE  +   L E +D++  AQTG+GKT AFG  L 
Sbjct: 2   TFDELGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPLL 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
             +         +     L IAPTREL +Q+  E++       GV V    GG ++  + 
Sbjct: 62  QNIDEN------SKTTQGLIIAPTRELCLQITNEMKLYSKHMKGVRVVAVYGGANIQEQA 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R++  GA IVV TPGR+ D +R + ++I+ L   VLDEADEML++GF +DI  IL  +P+
Sbjct: 116 REISRGAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +   +FSAT+   ++ +AK +  + + + +  +N    ++ +   +V   DR  A+  +
Sbjct: 176 DKLTWLFSATMPREVSRIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTRDRYQALKRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +    +++FC T+    +  + L E  +   AL G+LSQ +R   ++  R+ + ++ 
Sbjct: 236 SDANPDIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQML 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V++ +L    E   HRSGRTGRAG+ G S+ ++ ++  R+ ++
Sbjct: 296 VATDVAARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQ 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L +        +  P  + I +     +   +      + I       ++ +L  +  E+
Sbjct: 356 LEKILGKKFEQKTIPDGKEITQVQLFHLANSINTTEINNEIDA-YLPEIEEVLKDNTKEE 414

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +      +         + +     +               G +++    S+ + ++VGS
Sbjct: 415 LIKKVFSVEFTRFFNYYKKSKDLNQNAV-------------GAAKEQSGDSTRYFINVGS 461

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           K   +   L   L    G+ +  +  +  +   +F     +  D + 
Sbjct: 462 KDDFDWMKLKDFLKEELGLGQDGVYRVDCKDAFSFFNTDTEHKDKIL 508


>gi|228956670|ref|ZP_04118461.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228803008|gb|EEM49835.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 517

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|229041132|ref|ZP_04189892.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
 gi|228727214|gb|EEL78411.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH676]
          Length = 525

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|229107908|ref|ZP_04237540.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|229125742|ref|ZP_04254771.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|229143032|ref|ZP_04271470.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|296501059|ref|YP_003662759.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|146291075|sp|Q81IT9|CSHA_BACCR RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|228640440|gb|EEK96832.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST24]
 gi|228657715|gb|EEL13524.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-Cer4]
 gi|228675551|gb|EEL30763.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock1-15]
 gi|296322111|gb|ADH05039.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 533

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|228968588|ref|ZP_04129573.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791080|gb|EEM38697.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 481

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 146/538 (27%), Positives = 247/538 (45%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSDYKLSKEIVRALTGLGYDHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++        ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEAIEDEKFSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 MIENPDSCIIFCRTQENVDHVYRQLKRANYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +     P  E + +  A               +EK     ++ K     I  G
Sbjct: 358 EDYIGFEIPKAIGPLKEEVMKEKA-------------AFEEKIHAKPIIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKVMKTTTIKGKQLKV 476


>gi|228988681|ref|ZP_04148767.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771132|gb|EEM19612.1| ATP-dependent RNA helicase dbpA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 481

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 252/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y    + + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPIHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITSYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    AP  E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFAIPKANAPLKEEVMKGKA-------------AFEEKIHAKPTIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|163943135|ref|YP_001648019.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163865332|gb|ABY46391.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 481

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 147/538 (27%), Positives = 251/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFTDYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKK
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    +   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMKEEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               +EK     ++ K     +  G
Sbjct: 358 EEYIGFEIPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKNMKNTTIKGKQLKV 476


>gi|52144993|ref|YP_081836.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
 gi|81689748|sp|Q63GX5|CSHA_BACCZ RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|51978462|gb|AAU20012.1| DEAD/DEAH box helicase [Bacillus cereus E33L]
          Length = 528

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|28211174|ref|NP_782118.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203614|gb|AAO36055.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 481

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 139/542 (25%), Positives = 247/542 (45%), Gaps = 68/542 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  I + I EAL + GY N + VQ+ ++   ++ KD++V ++TGSGKT +FG+ +  
Sbjct: 6   FKSF-GISEDILEALLKLGYKNPSKVQQKVIPVAIKNKDIIVKSKTGSGKTASFGIPICE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E  +      P AL + PTREL +QV  +++ +     +  +   G      +  +
Sbjct: 65  NVNLEERK------PQALVLTPTRELCIQVKEDIKNIGRFKRIKCSAIFGKQPFKTQALE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI    +++  +K  ++DE DEM ++GF D +E I+   PKKR
Sbjct: 119 LKQRTHVVVGTPGRTLDHIERGTIDLDKIKYFIVDEGDEMFNMGFIDQVESIMRKLPKKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L + Y K  + + +  E      I +    +   ++ + +  IL 
Sbjct: 179 VNMLFSATIPEKIEKLCEKYMKSPIMIEVNPEEFTEEKIQHIYYEIEDKNKFDLLNKILI 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                ++I+FC T+ +V++  K++    +   AL G + Q +R + +   + G     +A
Sbjct: 239 TENPDSSIIFCRTQENVNKLAKLMENKDYPCKALHGGMMQDKRIDIMNRFKRGEFMFLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ ++  +I+ ++    EN +HR+GRTGRAGR+G ++ ++     R  +++ 
Sbjct: 299 TDLAARGIDVENVTHIINYDIPMEKENYVHRTGRTGRAGREGCAISLVTPYEDRFFKQIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +                   L D +  +S++  EK  +         EKI A  
Sbjct: 359 EYIGFKIK------------------LGDEITKESVENGEKAFI---------EKIKAM- 390

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                                 +    K  +   LS G K+K  
Sbjct: 391 -------------------------------PKIKKQKADKLDKDITKIYLSAGKKKKIR 419

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
              ++  +   SG+  + IG I +Q   ++V++      L+   +K    KG +L+    
Sbjct: 420 PGDIVGGITNISGVTPEDIGIIDIQDVCSYVDILNGKGKLVLEGLKSTTIKGKKLRAEKA 479

Query: 539 EK 540
            K
Sbjct: 480 TK 481


>gi|49480463|ref|YP_039444.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332019|gb|AAT62665.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 481

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 251/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KGFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q+ R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVYRQLNRVNYPCDKIHGGMVQENRFGVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + +  A               +EK      + K     I  G
Sbjct: 358 EAYIGFTIRKVNAPSKEEVMKGKA-------------AFEEKIHAKPTIKKDKNADINKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G++ + IG I +Q ++++VE+      L+ + ++    KG QLK   
Sbjct: 419 RAVDFVGTIAKIQGVSAEDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKVHE 478

Query: 538 GEK 540
             K
Sbjct: 479 ANK 481


>gi|15896005|ref|NP_349354.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum
           ATCC 824]
 gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 481

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/534 (24%), Positives = 242/534 (45%), Gaps = 66/534 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +++ + GY   +S+QE ++   L  KD++  A+TGSGKT AF + +   +  E 
Sbjct: 11  LSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCEKIELEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L +APTRELA Q+  +   +     +      G   +  + R+L+   H
Sbjct: 71  ------REPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELKQRVH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI    LN+  +K  ++DEADEML++GF + +E IL   PK +   +FS
Sbjct: 125 IVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNTFLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L+K Y K+   + + +E +    I      V   ++ + +  ++      +
Sbjct: 185 ATLPEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVIYKEVPGS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+FC T+ +V      +    F  +A+ G + Q+ R   +   + G     IATDVAAR
Sbjct: 245 SIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++    E+ +HR GRTGR G KG+++  +    +R  + +  + ++ 
Sbjct: 305 GIDVENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEIEEQFSLE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++ E  P+ E +++   +        L+  + ++ + ++  + K     ++AG  +  R 
Sbjct: 365 IIKEEPPTREEVKKGQ-EVFKTASKQLNKTKANKSEKLNKDITKIY---LSAGKKKKIRP 420

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G  A    +                                                   
Sbjct: 421 GDIAGTISSI----------------------------------------DGVSP----- 435

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
                     + IG I +  + ++VE+ +   D++   ++ DK I+ K +  EK
Sbjct: 436 ----------EDIGIIDIHDNFSYVEILSGKGDIVLNAIE-DKTIKGKKVRAEK 478


>gi|260655032|ref|ZP_05860520.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
 gi|260630347|gb|EEX48541.1| ATP-dependent RNA helicase [Jonquetella anthropi E3_33 E1]
          Length = 590

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 182/596 (30%), Positives = 292/596 (48%), Gaps = 44/596 (7%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F + P    + + L+ RG+   T VQ  +L  D  ++D++V A+TGSGKT+AF L + S
Sbjct: 6   LFSDFPLVAPLIKELASRGFDEPTPVQRGVLGQDDWDRDLVVQARTGSGKTLAFLLPVLS 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +    F       AL ++PTRELA Q+ +E        G+  AV +GG+ + R+   
Sbjct: 66  ELASRL--FPGRQTVKALILSPTRELAQQIAQEAASFGRLVGIGTAVLVGGMDMDRQISS 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  + VGTPGR+ DH++   L++S ++ VVLDE D MLD+GFRD++E IL ++  ++
Sbjct: 124 LRSGVALAVGTPGRVLDHVKRGTLDLSEIETVVLDEGDTMLDMGFRDELEAILQAASARK 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSATI   +T + + +  + V ++   E+ QHSDI ++A LV  S R   +VN+L 
Sbjct: 184 RTWLFSATIPQEVTAVCRRFTTNPVFLSFDDESSQHSDIVHKAYLVPSSQRYEGLVNVLL 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +      ++FC TR+  +  T+ L +  F  + L G++SQ+ER+ AL   R GR  V +A
Sbjct: 244 WERPSLCLIFCRTRSDTAEVTERLQKEGFLAMPLHGDMSQRERNTALSSFRSGRIPVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+  +  VI   +  + E  +HRSGRTGRAG +G ++ V+      R + + 
Sbjct: 304 TNVAARGLDVSGVSHVIQLGVPESLETFVHRSGRTGRAGHEGTNLLVLTPAESSRFKFMM 363

Query: 361 REANVSVVWEPAPSVEAIRERDAQR-ILQDPLFLDSIQGDEKKMVDVLLAK--HDPEKIA 417
           R   + V W   P  + I     QR + Q+ L   +   +       LL     DP  + 
Sbjct: 364 RSTQMKVQWLKVPDFQEIS--VVQRSVRQEKLLAVAPSEEFFSWAQELLETAGEDPTALV 421

Query: 418 AGFL---------------RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           A  L                + +             + SGR  FR  S   K        
Sbjct: 422 AKLLASVTQDEPKGYRLRDSLLQELERRSARREAREMPSGRAGFRRPSEEQKKDRYP--- 478

Query: 463 FKGSSWFSLSVGSK-QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                   ++ G +        ++  LC + G++R  IG I+++   T V++    +  L
Sbjct: 479 -GSGVSIRIAKGRRDDDWSVGRILGALCGALGVDRTEIGNIKMRETYTEVQLGPKALSQL 537

Query: 522 ---RRTVKLDKGIQLKYLGGE--------KPDFRGYKSSGFKSKNSQDGATKRFKR 566
               R    DKG+ L   GG+         P  R +  SG   +   DG TK  ++
Sbjct: 538 NSGGRLRLADKGL-LSGEGGQNFVPRLGSAPRRRRFDPSG---RKIDDGFTKASQK 589


>gi|254756954|ref|ZP_05208982.1| DEAD/DEAH box helicase [Bacillus anthracis str. Australia 94]
          Length = 516

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|42779348|ref|NP_976595.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|206977074|ref|ZP_03237974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217957807|ref|YP_002336351.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222094007|ref|YP_002528058.1| dead/deah box helicase [Bacillus cereus Q1]
 gi|229137077|ref|ZP_04265701.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|229194624|ref|ZP_04321421.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|81700027|sp|Q73EU1|CSHA_BACC1 RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|42735263|gb|AAS39203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
 gi|206744723|gb|EDZ56130.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217064501|gb|ACJ78751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221238056|gb|ACM10766.1| DEAD/DEAH box helicase [Bacillus cereus Q1]
 gi|228588845|gb|EEK46866.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1293]
 gi|228646384|gb|EEL02594.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
           BDRD-ST26]
 gi|324324246|gb|ADY19506.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 525

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|30260423|ref|NP_842800.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47525504|ref|YP_016853.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567484|ref|ZP_00238196.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49183266|ref|YP_026518.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49479130|ref|YP_034574.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|65317675|ref|ZP_00390634.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118475995|ref|YP_893146.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165871548|ref|ZP_02216194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634144|ref|ZP_02392466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167640350|ref|ZP_02398615.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687759|ref|ZP_02878974.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170707898|ref|ZP_02898348.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177653423|ref|ZP_02935633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567376|ref|ZP_03020290.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196035956|ref|ZP_03103357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041156|ref|ZP_03108452.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046212|ref|ZP_03113439.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218901440|ref|YP_002449274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225862289|ref|YP_002747667.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227812915|ref|YP_002812924.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228912978|ref|ZP_04076622.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228925493|ref|ZP_04088587.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931740|ref|ZP_04094641.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228983493|ref|ZP_04143703.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229089370|ref|ZP_04220646.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|229119903|ref|ZP_04249162.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|229154007|ref|ZP_04282136.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|229182634|ref|ZP_04309880.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|229604746|ref|YP_002864874.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254686589|ref|ZP_05150448.1| DEAD/DEAH box helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254723571|ref|ZP_05185358.1| DEAD/DEAH box helicase [Bacillus anthracis str. A1055]
 gi|254734933|ref|ZP_05192645.1| DEAD/DEAH box helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739718|ref|ZP_05197411.1| DEAD/DEAH box helicase [Bacillus anthracis str. Kruger B]
 gi|254754911|ref|ZP_05206946.1| DEAD/DEAH box helicase [Bacillus anthracis str. Vollum]
 gi|301051970|ref|YP_003790181.1| DEAD/DEAH box helicase [Bacillus anthracis CI]
 gi|81696998|sp|Q6HPE6|CSHA_BACHK RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|81715465|sp|Q81VG0|CSHA_BACAN RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|134039177|sp|A0R8U6|CSHA_BACAH RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|30253744|gb|AAP24286.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47500652|gb|AAT29328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47555886|gb|EAL14225.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49177193|gb|AAT52569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49330686|gb|AAT61332.1| DEAD/DEAH box helicase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118415220|gb|ABK83639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712652|gb|EDR18183.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167511752|gb|EDR87133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167530458|gb|EDR93173.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170127256|gb|EDS96133.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170668286|gb|EDT19034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172081463|gb|EDT66536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190561503|gb|EDV15474.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195991325|gb|EDX55292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022957|gb|EDX61637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196028091|gb|EDX66702.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539043|gb|ACK91441.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225790192|gb|ACO30409.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005398|gb|ACP15141.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228600842|gb|EEK58416.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus BGSC 6E1]
 gi|228629528|gb|EEK86226.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus ATCC
           4342]
 gi|228663560|gb|EEL19141.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 95/8201]
 gi|228693970|gb|EEL47657.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-42]
 gi|228776237|gb|EEM24593.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228827920|gb|EEM73653.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228834238|gb|EEM79781.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228846673|gb|EEM91681.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229269154|gb|ACQ50791.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300374139|gb|ADK03043.1| DEAD/DEAH box helicase [Bacillus cereus biovar anthracis str. CI]
          Length = 528

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|311070440|ref|YP_003975363.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310870957|gb|ADP34432.1| ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 481

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/536 (25%), Positives = 244/536 (45%), Gaps = 67/536 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   GY++ T VQ+ ++   L +KD++V +QTGSGKT AFG+ +      + 
Sbjct: 11  LSAEIVRALEGLGYMSPTEVQQKVMPQALEKKDLVVKSQTGSGKTAAFGIPICEMADWDE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELAVQV  ++  +     +  A   G     +++ +L+   H
Sbjct: 71  NK------PQALILTPTRELAVQVKEDITNIGRFKRMKAAAVFGKSPFDKQKAELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI      +  LK +V+DEADEML++GF + +E I+   P+ R  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTFPLERLKYLVIDEADEMLNMGFIEQVEAIIKHLPRDRMTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y K+   + I +       I++  + V    + + + ++L      +
Sbjct: 185 ATLPEDVEQLSRKYMKNPEHIEIKAAGLTTKHIEHSVIEVREDHKFSLLKDVLVTENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V + ++ L    +    + G + Q++R + +   + G  R   ATDVAAR
Sbjct: 245 CIIFCRTKENVDKLSEELDALDYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLAATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +L    E+ +HR+GRTGRAG +G ++  +    +R    +       
Sbjct: 305 GIDIENITHVINYDLPLEKESYVHRTGRTGRAGNQGKAITFVTPYEKRFLAEIEAYIGFE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +    APS E +  +        P FL+ +                              
Sbjct: 365 IPQAEAPSREEVSRKK-------PAFLEKL------------------------------ 387

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                                +D    K     + N      +  + G K+K  A   + 
Sbjct: 388 ---------------------NDRPTVKKDKSEQLNKDIMKLYF-NGGKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  G+    IG I +Q ++++V++      L+ + +K    KG  LK     K
Sbjct: 426 TIAKIDGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKKTTVKGKLLKVNKANK 481


>gi|298208330|ref|YP_003716509.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848251|gb|EAP86121.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 623

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 141/513 (27%), Positives = 246/513 (47%), Gaps = 24/513 (4%)

Query: 18  RGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
            G+   + VQE  +   L ++ D++  AQTG+GKT AFG  L   + A   +        
Sbjct: 1   MGFTEPSEVQEKAIPILLEKDTDIVALAQTGTGKTAAFGFPLIQKIDAGYKK------TQ 54

Query: 77  ALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            L ++PTREL +Q+  EL+       G+      GG S+  + + ++ GA I+V TPGR+
Sbjct: 55  GLILSPTRELCLQITNELQNYSKYVKGLNPVAVYGGASITEQAKQIKRGAQIIVATPGRM 114

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR   ++IS ++  VLDEADEML++GF DDI  IL  SP+ +   +FSAT+   +  
Sbjct: 115 QDMIRRGLVDISEIQYCVLDEADEMLNMGFYDDITEILSHSPEDKFTWLFSATMPKEVAR 174

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           +AK++  + V + + S+N+   ++ +   LV   DR  A+  +   +    +++FC T+ 
Sbjct: 175 IAKDFMNNPVEITVGSKNKGTENVSHEYYLVGGRDRYKALKRLCDANPEIFSVIFCRTKR 234

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              +  + L +  +   A+ G+LSQ +R   ++  R  + ++ +ATDVAARGID+ D+  
Sbjct: 235 DTQKVAEQLIQDGYSAGAIHGDLSQNQRDLVMRSFRTRQIQMLVATDVAARGIDVDDITH 294

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VIH  L   PE   HRSGRTGRAG+ G S+ +  ++  R+ + + +    +   +  P  
Sbjct: 295 VIHYTLPDEPEVYTHRSGRTGRAGKSGTSMTIATKSEMRKIKAIEKRIQRNFERKDVPDG 354

Query: 376 EAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           E I +     +   ++D     +I       ++  L  +  E++   F  +         
Sbjct: 355 EEICQVQLFHLASQIKDTEINHAIDK-YVPQLEEELGDYTKEELIKKFFSVEFTRFHNYY 413

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSS 492
               +S VS  +R   +  +             S  + ++VG K   +   L   L    
Sbjct: 414 SKDSISQVSADNRDYSEGDS------------DSVRYFINVGGKDGFDWMSLKDFLKEQL 461

Query: 493 GINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            ++R  +  + V+   +F    AD +D +    
Sbjct: 462 DLDRDGVYKVDVKNTFSFFNTDADKLDKVMEVF 494


>gi|229065102|ref|ZP_04200395.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
 gi|228716131|gb|EEL67850.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH603]
          Length = 481

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 148/538 (27%), Positives = 251/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFADYALSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKK
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    +   ++ + + +I 
Sbjct: 178 RMTMLFSATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 TIENPDSCIIFCRTQENVDHVFQQLKRINYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               +EK     ++ K     +  G
Sbjct: 358 EEYIGFEIPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKIMKNTTIKGKQLKV 476


>gi|295702900|ref|YP_003595975.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800559|gb|ADF37625.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 481

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 144/531 (27%), Positives = 241/531 (45%), Gaps = 67/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +ALS   Y + T VQ  +L   L E+DV+V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  ++  +     +  A   G     +++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L +  ++ +V+DEADEML++GF D +E I+   P +R  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L++ Y K  V V I +     S ID+  + V    +   + ++       +
Sbjct: 185 ATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVGNERKFELLKDVTTVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+  V+     L +  +    + G + Q++R   +   + G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQEQVNTLLDDLDDLGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +L    E+ +HR+GRTGRAG+KG ++  +    +R    +      S
Sbjct: 305 GIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEERMLSEIEEYIGFS 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     PS E +++        +  F D I                              
Sbjct: 365 IPTSTPPSKEEVQQ-------AESAFTDKI------------------------------ 387

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                                 + R       S    K       + G K+K  A   + 
Sbjct: 388 ----------------------NERPEVKKDKSESLNKDIMKLYFNGGKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+    IG I +Q ++++VE+       + + +K    KG +LK 
Sbjct: 426 TIAKLDGVTADDIGIITIQENVSYVEILNGKGTKVLQAMKNKTIKGKKLKV 476


>gi|228950768|ref|ZP_04112897.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229067991|ref|ZP_04201304.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|229077588|ref|ZP_04210230.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|229176827|ref|ZP_04304229.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228606719|gb|EEK64138.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus 172560W]
 gi|228705727|gb|EEL58071.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock4-2]
 gi|228715129|gb|EEL66992.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus F65185]
 gi|228808908|gb|EEM55398.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 525

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|206972279|ref|ZP_03233226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218235804|ref|YP_002365074.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228919172|ref|ZP_04082546.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|229148635|ref|ZP_04276889.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|206732853|gb|EDZ50028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|218163761|gb|ACK63753.1| DEAD/DEAH box helicase [Bacillus cereus B4264]
 gi|228634893|gb|EEK91468.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus m1550]
 gi|228840483|gb|EEM85750.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 533

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 235/449 (52%), Gaps = 16/449 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEK 415
           + R     +    AP+++   E   QR++ + L     +      K++ + +L ++D   
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVT 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           + A  L++    +    + TP++L S   
Sbjct: 414 VVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 523

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/446 (31%), Positives = 222/446 (49%), Gaps = 11/446 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A++  GY   T +Q   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 1   MKFKELGLSEDLLKAITSVGYEEATPIQAETIPMVLAGQDVIGQAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N+         AL ++PTRELA+Q   E+  L       V V  GG  + R+ +
Sbjct: 61  EKIDKSNENV------QALVVSPTRELAIQTQEEIYKLGRTERANVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N   +VVGTPGRL DHIR   L + H++ +VLDEADEML++GF DDIE I+   P++
Sbjct: 115 SLKNHPQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEMLNMGFLDDIEDIIKQLPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ P I  +   + KD   V I ++      ID   V     ++ + +    
Sbjct: 175 RQTMLFSATMPPEIKRVGVQFMKDPKHVKIKAKELTTDLIDQFYVRSRDFEKFDVMTRFF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V      L    +    + G+L+Q+ R+  +   R G+  + +
Sbjct: 235 DVQSPDLTIVFTRTKRRVDEIASGLEARGYNAAGIHGDLTQKRRTQIMNDFRHGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V + ++  +P++ +HR GRTGRAG+ G+S+  +  N       +
Sbjct: 295 ATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGVSMTFVTPNEMDYLREI 354

Query: 360 FREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    PS E   + +  A +     L   + +    K  + LL ++D E + 
Sbjct: 355 EKLTKVRMLPLKPPSDEEAFVSQLGAAKETIADLVNKADKEKYAKAAESLLNEYDAEDLV 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVS 441
           A  L           P +ITP   + 
Sbjct: 415 AALLSDVTKDDNNQVPVKITPERPLP 440


>gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
           53608]
          Length = 497

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 226/484 (46%), Gaps = 12/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  EN          A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ +
Sbjct: 61  ENVDTENPNI------QAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  
Sbjct: 115 SLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   +K L    +    + G+L+Q +RS  +   ++    + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ E   +          D L         ++  + LL  H+   + 
Sbjct: 355 EKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLV 414

Query: 418 AGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKGSSWFSLSVG 474
           A  L      A    P +ITP   +  R++  + +       GG+    K          
Sbjct: 415 AALLNNMTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGSH 474

Query: 475 SKQK 478
               
Sbjct: 475 RNDN 478


>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
 gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
          Length = 527

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 135/450 (30%), Positives = 238/450 (52%), Gaps = 18/450 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +++   G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L
Sbjct: 1   MTTFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      +   + IAPTRELA+QVG EL  +     V +    GG  ++R+ 
Sbjct: 61  LDKVDTHKE------SVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  +A+ +  +   + + ++     +I    + V    + + +  +
Sbjct: 175 THQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG+++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPE 414
           + R     +    AP+++   E   QR++ + L   +I+ D     K++ + +L ++D  
Sbjct: 355 IERTTKRKMDRMNAPTLDEALEGQ-QRLIAEKL-QSTIESDNLSYYKRIAEEMLEENDSV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + A  L++    +    + TP++L S   
Sbjct: 413 TVVAAALKM----MTKEPDTTPIALTSEPP 438


>gi|325274041|ref|ZP_08140194.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324100824|gb|EGB98517.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 504

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 248/505 (49%), Gaps = 26/505 (5%)

Query: 50  KTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-C 108
           KT AF L + + +            P AL +APTRELA+QV    E    +   V  V  
Sbjct: 1   KTAAFALPILNKIDVSK------REPQALILAPTRELALQVATAFETYAKQMPGVNVVAV 54

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++NGA IVV TPGRLCDH+R     +S ++ +VLDEADEML LGF DD
Sbjct: 55  YGGAPMGPQLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDD 114

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +E I D+ P  R+ ++FSAT+  +I ++A+ + ++   V I S+ +  + ID   ++V  
Sbjct: 115 LEVIFDAIPATRQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHA 174

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +  A++ +L        I F  T+ +       L    ++  AL+G+++Q +R   + 
Sbjct: 175 DQKIPAVLRLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVID 234

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++DGR  + +ATDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++
Sbjct: 235 SLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLV 294

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMV 404
               +R  + + R     V     P+ +A+ +   +++      L    ++  GD    +
Sbjct: 295 TPRERRMLQVIERVTGQKVAEARLPNAQAVLDARIKKLTNSLAPLVAEAEATHGDLFDRL 354

Query: 405 DVLLAKHDPEKIAAGFLRIHRAG----LCAPEEITPV--------SLVSGRDRFRDDSRA 452
              L       +A+  LR    G    L A E   P+              +R     R 
Sbjct: 355 TNDLG-CSARALASALLRKATNGQALDLAAVEREQPLVPSFAPRGERTERGERSERPDRG 413

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            +         +G      ++G++    A+ L+  +    G+ R +IG I+V+   + VE
Sbjct: 414 DRERRAPLPLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVE 473

Query: 513 VSADGVDLLRRTVKLDK--GIQLKY 535
           +  DG++ L   +K  +  G QLK 
Sbjct: 474 LPEDGLEKLLSKLKDTRVAGKQLKL 498


>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 497

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 142/484 (29%), Positives = 226/484 (46%), Gaps = 12/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  EN          A+ I+PTRELA+Q   EL  L     V V V  GG  + R+ +
Sbjct: 61  ENVDTENPNI------QAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DHI    + + H+K +VLDEADEML++GF +DIE I+  +P  
Sbjct: 115 SLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++
Sbjct: 175 RQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+  V   +K L    +    + G+L+Q +RS  +   ++    + +
Sbjct: 235 DVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ E   +          D L         ++  + LL  H+   + 
Sbjct: 355 EKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLV 414

Query: 418 AGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-GGSRDNFKGSSWFSLSVG 474
           A  L      A    P +ITP   +  R++  + +       GG+    K          
Sbjct: 415 AALLNNMTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGSH 474

Query: 475 SKQK 478
               
Sbjct: 475 RNDN 478


>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 528

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 148/447 (33%), Positives = 230/447 (51%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNI------QALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I +++ +VLDEADEML++GF DDIE I+  +P +
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEMLNMGFLDDIEAIISKTPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV  +  N       +
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIA 417
                  +      S++  R         +   L       + +  VD L AK+  E++A
Sbjct: 355 EDLTKKRMTPLEPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYSAEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AAVLS---SVADLEKQNTPVEITRERP 438


>gi|152974078|ref|YP_001373595.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152022830|gb|ABS20600.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 511

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 236/460 (51%), Gaps = 14/460 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +++ + G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    
Sbjct: 21  LSDSLLQSVEKMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLEKVDTNK 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +          + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   H
Sbjct: 81  E------MVQGIVIAPTRELAIQVGEELYKIGQHKRVRILPIYGGQDINRQIRALKKRPH 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DHI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FS
Sbjct: 135 IIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  +A+ +  +   + + ++     +I    + V    + + +  +L     + 
Sbjct: 195 ATMPEPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPEL 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAAR
Sbjct: 255 AIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      + + + R     
Sbjct: 315 GLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGLAMLFVTPREMGQLKNIERTTKRK 374

Query: 367 VVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +    AP+++   E   QR++ + L     +      K++ + +L ++D   + A  L++
Sbjct: 375 MDRMKAPTLDEALEGQ-QRLIAEKLQSAIENDNLSYYKRIAEEMLEENDSVAVVAAALKM 433

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +    + TP+SL S        S+    G    +  
Sbjct: 434 ----MTKEPDTTPISLTSEPPVISRGSKKRSGGYRDGNRN 469


>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
 gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
           ATCC 8290]
          Length = 502

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 218/464 (46%), Gaps = 10/464 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+S  G+   T +Q   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N          AL I+PTRELA+Q   E+  L       V V  GG  + R+  
Sbjct: 61  QHLDFNNPNV------QALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGR+ DHI    L + H+K +VLDEADEML++GF DDIE I+  +P  
Sbjct: 115 SLKSHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   + KD  +V I ++      ID   V V   ++ + +    
Sbjct: 175 RQTLLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVFC T+  V   +K L    +    L G+L+Q  R+  +   + G+  + +
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V + ++  +P+  +HR GRTGRAG+ G+S+     N       +
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ +            D   L   +     +KM D LL +++   + 
Sbjct: 355 EKLTKVRMLPLKPPTEQEAFVGQLNNAESDIGELIKRTNTEKYEKMADKLLDEYEATDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           A  L           +ITP   +S R       R      G   
Sbjct: 415 AALLN-DVTRDYVKVKITPERPLSRRHHGSGGRRNSNNHRGGGH 457


>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 502

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 218/464 (46%), Gaps = 10/464 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+S  G+   T +Q   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 1   MKFSELGLSDSLLSAISSSGFEEATPIQAETIPMVLNGEDVIGQAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N          AL I+PTRELA+Q   E+  L       V V  GG  + R+  
Sbjct: 61  QHLDFNNPNV------QALIISPTRELAIQTQEEVYRLGKDEKAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGR+ DHI    L + H+K +VLDEADEML++GF DDIE I+  +P  
Sbjct: 115 SLKSHPQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEMLNMGFLDDIESIIKQTPSD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ P I  +   + KD  +V I ++      ID   V V   ++ + +    
Sbjct: 175 RQTLLFSATMPPQIKRVGVQFMKDPHQVKIKAKELTTDLIDQYYVRVKEYEKFDTMTRFF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVFC T+  V   +K L    +    L G+L+Q  R+  +   + G+  + +
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDLTQARRTQIMNEFKQGKVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V + ++  +P+  +HR GRTGRAG+ G+S+     N       +
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFTTPNEMDYLHEI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   V ++    P+ +            D   L   +     +KM D LL +++   + 
Sbjct: 355 EKLTKVRMLPLKPPTEQEAFVGQLNNAESDIGELIKRTNTEKYEKMADKLLDEYEATDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           A  L           +ITP   +S R       R      G   
Sbjct: 415 AALLN-DVTRDYVKVKITPERPLSRRHHGSGGRRNSNNHRGGGH 457


>gi|205372271|ref|ZP_03225085.1| hypothetical protein Bcoam_02010 [Bacillus coahuilensis m4-4]
          Length = 499

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 151/464 (32%), Positives = 245/464 (52%), Gaps = 18/464 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + ++++  G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MTKFSELNLSPSMLKSINRMGFEEATPIQAGTIPLSLEGKDIIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N           L IAPTRELA+QV  EL  +     V V    GG  ++R+ 
Sbjct: 61  VEKIDTKNTNV------QGLIIAPTRELAIQVSEELYKVGYDKRVRVLAVYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R ++ G HI+VGTPGRL DHI  + L +  +  +VLDEADEML++GF DDIE IL + P+
Sbjct: 115 RAMKKGPHIIVGTPGRLLDHINRRTLKLDQVHTLVLDEADEMLNMGFIDDIESILKNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  +A+N+  +   V + S+    S ID   V     ++ + +  +
Sbjct: 175 GRQTLLFSATMPGPIRKIAENFMTNPETVKVKSKEMTVSLIDQYFVKAQEREKFDILARL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   +K L+   +Q   + G+LSQ +RS+ L+  ++GR  V 
Sbjct: 235 LDTQSPELAIVFGRTKRRVDELSKALSIRGYQAEGIHGDLSQAKRSSVLRKFKEGRIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPE 414
           + +  N  +     PSV    E   QR+ ++ L +++I      + +K+V  LL ++ PE
Sbjct: 355 VEQTTNKRMTPMRPPSVNEALEGQ-QRLAKEKL-VEAINSNGLDEYEKLVAELLGEYTPE 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
           ++ A  L++         + TP+ +   R       R  +    
Sbjct: 413 QVIAASLKL----FTKEPDKTPIEITEERPLPFKGERPRRNNDK 452


>gi|255524805|ref|ZP_05391755.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188658|ref|ZP_06857046.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
 gi|255511472|gb|EET87762.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046922|gb|EFG86368.1| ATP-dependent RNA helicase DbpA [Clostridium carboxidivorans P7]
          Length = 480

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 142/536 (26%), Positives = 253/536 (47%), Gaps = 70/536 (13%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + Q I +++   GY   + VQ+ ++   L+ KDV+V +QTGSGKT AF + +   
Sbjct: 6   FEDFRLGQDILKSIKNIGYKKPSKVQQQVIPLILQGKDVIVKSQTGSGKTAAFAIPICEH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E +         AL + PTRELAVQ+  ++  +     +  +   G   +  ++++L
Sbjct: 66  MEIEENDA------QALILTPTRELAVQIKEDISNIGRFKRIRCSAIFGKQPMDTQKKEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HI+VGTPGR  DHI+   +N+ ++K ++LDEADEML++GF +++  I+++ P  R+
Sbjct: 120 KQRVHIIVGTPGRTLDHIKRGNMNLQNIKFLILDEADEMLNMGFIEEVSEIIENIPVSRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+  AI  L+K Y K+  +V I  E     +I+ +  ++  +++ + + N+L  
Sbjct: 180 NMLFSATMPEAIENLSKKYMKNPAKVEITPEKLTVDNIEQKCYIIEENNKFSLLRNLLYI 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVFC T+ +V   T  +    +    + G + Q ER + +   + G  R  IAT
Sbjct: 240 ENPDTAIVFCRTKNNVDYVTSRMKAEKYSCDKIHGGMLQNERLDTMNSFKMGEFRFLIAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  VI+ +L    E+ +HR GRTGRAG KG ++     N  R    +  
Sbjct: 300 DVAARGIDIDNVTHVINYDLPMEKESYIHRIGRTGRAGNKGTAITFSTPNEDRFLSEIED 359

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + +     P+     E+DA +  +  L  + I+  +K     L ++     I AG  
Sbjct: 360 YIQMEIPKCELPT-----EKDANQNKEAFLSKNKIKPLKKGKTADLNSEITKIYINAGKK 414

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           +  R G                                             VG       
Sbjct: 415 KKIRPGDI-------------------------------------------VG------- 424

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
                 +  S+G++ + IG I +    +++++     + + + +     KG ++K 
Sbjct: 425 -----AISNSTGLSAEVIGVIDIHDTHSYIDILEGNGEKVLKALSEGTIKGKKVKV 475


>gi|28377407|ref|NP_784299.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270239|emb|CAD63140.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 528

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 140/497 (28%), Positives = 225/497 (45%), Gaps = 26/497 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A++  GY   T +Q   +   L  KDV+  AQTG+GKT AF L + 
Sbjct: 1   MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +N          AL ++PTRELA+Q   E+  L       V V  GG  + R+ R
Sbjct: 61  QRLDFDNHNI------QALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+    ++VGTPGRL DHIR   + + H+K +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 NLKQNPQVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+ P I  +   + K+   V I S+      +D   V     ++ + +  + 
Sbjct: 175 RQTMLFSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V   +K L    +    + G+LSQQ R+  ++  + G+  + +
Sbjct: 235 DVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG KG+S+  +  N       +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +     ++    P+                D L   +           LL K+D   + 
Sbjct: 355 EKLTKKRMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLQKYDATDLV 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRA--------------FKVGGGSRD 461
           A  L           P +ITP   +        ++R                   GG   
Sbjct: 415 AALLNDLTKDDASAVPVKITPERPLPRHKGGGGNNRRGGYRGGNRNRNNSHGNGRGGYSH 474

Query: 462 NFKGSSWFSLSVGSKQK 478
           N +       + G   +
Sbjct: 475 NGRNRDRDR-NGGRGDR 490


>gi|300853611|ref|YP_003778595.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 496

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 128/542 (23%), Positives = 242/542 (44%), Gaps = 68/542 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  + + I +++ + GY N + VQE ++    + KD++V +QTGSGKT AF + +  
Sbjct: 21  FKDFA-LSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPICE 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E         P  L +APTRELA+Q+  +   +     +      G   +  + ++
Sbjct: 80  KIELEEKN------PQVLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKE 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H++VGTPGR  DHI    L++  ++ +++DEADEML++GF D ++ +LD  PK R
Sbjct: 134 LKQRTHVIVGTPGRTLDHIEKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             L+FSATI   I  L   Y  + + V I +E+   + I+     +    + + +  ++ 
Sbjct: 194 VTLLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLVY 253

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +++++FC T+ +V      +    +    L G + Q ER + ++  + G     + 
Sbjct: 254 TQRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVC 313

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  +I+ ++    E+ +HR GRTGRAG+ G ++  +     R  E + 
Sbjct: 314 TDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEYRFLEEIE 373

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +  N+++     PS E + +                                 EK+ A  
Sbjct: 374 KFFNLTIEKGTIPSKEEVEKGK---------------------------DIYKEKLKAAP 406

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                      ++IT + + +G+ +                                K  
Sbjct: 407 KIKKDKSTKLNKDITKIYISAGKKK--------------------------------KIR 434

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGG 538
              +   +    GIN + +G I +Q + ++V++ +    ++   +K    KG  ++    
Sbjct: 435 PGDIAGTISSIDGINPEDVGIIEIQDNFSYVDILSGKGHIVLDGLKHKTIKGKSVRVEIA 494

Query: 539 EK 540
           +K
Sbjct: 495 QK 496


>gi|313123075|ref|YP_004033334.1| dead box ATP-dependent RNA helicase srmb [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279638|gb|ADQ60357.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 481

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 145/449 (32%), Positives = 220/449 (48%), Gaps = 10/449 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKLDLDKQ----EQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  +
Sbjct: 117 ALKKAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  L + +  D   V I ++      ID   V V  +++ + +  ++
Sbjct: 177 DQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLI 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRA 356
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N     R  
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           E L ++    +   P    +A   +  Q +L+    L           + LL  +  E I
Sbjct: 357 EDLIKKKMSPL--RPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           AA  L+           ITP +  S R +
Sbjct: 415 AAALLKELSNDSEVTVTITPENPRSYRGK 443


>gi|229136279|ref|ZP_04265026.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
 gi|228647151|gb|EEL03239.1| ATP-dependent RNA helicase dbpA [Bacillus cereus BDRD-ST196]
          Length = 481

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 145/531 (27%), Positives = 248/531 (46%), Gaps = 67/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTLSLDCLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y      + I +       I++    +   ++ + + ++       +
Sbjct: 185 ATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHTLFEMREEEKLSLLKDVTTIENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       
Sbjct: 305 GIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +    APS E + +  A               +EK     ++ K     +  G ++++  
Sbjct: 365 IPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKGIMKLYFN 411

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 412 G----------------------------------------------GKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 426 TIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKNMKNTTIKGKQLKV 476


>gi|229170156|ref|ZP_04297843.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
 gi|228613301|gb|EEK70439.1| ATP-dependent RNA helicase dbpA [Bacillus cereus AH621]
          Length = 481

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 145/531 (27%), Positives = 247/531 (46%), Gaps = 67/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI    L+++ LK +V+DEADEML++GF D +E I+D  P KR  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTLSLACLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y      + I +       I++        ++ + + ++       +
Sbjct: 185 ATLPEDVEKLSRKYMDSPTHIEIKAAGITTDKIEHTLFETREEEKLSLLKDVTTTENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V    K L    +    + G + Q++R   +   R G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVFKQLDRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       
Sbjct: 305 GIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +    APS E + +  A               +EK     ++ K     +  G ++++  
Sbjct: 365 IPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKGIMKLYFN 411

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 412 G----------------------------------------------GKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+  + IG I +Q ++++VE+      L+ + +K    KG QLK 
Sbjct: 426 TIAKIKGVTAEDIGIITIQDNVSYVEILNGKGPLVLKIMKSTTIKGKQLKV 476


>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
 gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
           ATCC 33200]
          Length = 484

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 234/483 (48%), Gaps = 13/483 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSI------QAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +  ++    P+ E   +       +     LDS      +    LL  +    + A
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVA 414

Query: 419 GFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSWFSLSVG 474
             L+ + +       +ITP   +  + +  ++    R FK GG   + +          G
Sbjct: 415 ALLKDLSKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSAR-KGG 473

Query: 475 SKQ 477
            K 
Sbjct: 474 RKH 476


>gi|229000239|ref|ZP_04159808.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
 gi|228759571|gb|EEM08548.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 139/538 (25%), Positives = 243/538 (45%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   + + I  AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +      G     R++ 
Sbjct: 64  EMIEWEENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTD 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L+  Y K    + I +       I++  + V   ++ + + +I 
Sbjct: 178 RMTMLFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   + G+ R  +
Sbjct: 238 TLENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +    +R    +
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +               +  ++K     ++ K     +   
Sbjct: 358 EEYIGFEIQKIEAPSKEELAKGK-------------VAFEDKINAKPIMKKEKSAGLNKD 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+    IG I +Q ++++V++      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKV 476


>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 538

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 150/447 (33%), Positives = 234/447 (52%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLDNKNI------QALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I H+K +VLDEADEML++GF +DIE I+ ++P +
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEMLNMGFLEDIESIIKNTPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV  +  N       +
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVSPNEMDYLRAV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDE-KKMVDVLLAKHDPEKIA 417
                  +      S++  R    +    +    +D+    E +  VD L A++  E++A
Sbjct: 355 EDLTKKRMTALEPASLQDARVGKIKNAAGEVSKIVDAANAKEIQSEVDKLTAQYSSEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AALLS---SVADLEKQNTPVEITRERP 438


>gi|300812076|ref|ZP_07092524.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300496915|gb|EFK31989.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 481

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 142/447 (31%), Positives = 217/447 (48%), Gaps = 6/447 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKLDLDKQ----EQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  +
Sbjct: 117 ALKKAPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  L + +  D   V I ++      ID   V V  +++ + +  ++
Sbjct: 177 DQTLLFSATMPKPIQALGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLI 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGMSVTFVTPNEIGYMRTI 356

Query: 360 FREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                  +     P+  +A   +  Q +L+    L           + LL  +  E IAA
Sbjct: 357 EDLTKKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAA 416

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDR 445
             L+           ITP +  S R +
Sbjct: 417 ALLKELSNDSEVTVTITPENPRSYRGK 443


>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii DSM
           519]
 gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [Clostridium sticklandii]
          Length = 515

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 250/480 (52%), Gaps = 16/480 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F  +   + + +A+ + G+ + T +QE I+   ++  D++  AQTG+GKT AFG+ L
Sbjct: 1   MALFNELGLQEELLKAVLDMGFDSPTPIQEQIIPLAMQGIDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S +   N       A  AL +APTRELA+QV +E+  L     V      GG  + ++ 
Sbjct: 61  LSKIEKGN------KAVQALILAPTRELALQVSQEINRLAKYKNVEAIAIYGGEDIGKQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVV TPGR  DH+R   +N+++++ V+LDEADEML +GF +DIE IL   P 
Sbjct: 115 RGLKKNPQIVVATPGRFMDHMRRNTINLANIQTVILDEADEMLSMGFIEDIETILQEVPS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I ++++ + K    V + ++      I+ R + +   D+ +A+  +
Sbjct: 175 ERQTLLFSATMPKRIQSVSQKFMKSPQTVAVKNKTMTVDTIEQRYLDLKERDKFDALCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  + +I+F  T+  V   ++ L+   + V  + G++ Q+ R   L+  + G  ++ 
Sbjct: 235 MDIHCPELSIIFGRTKRRVDELSEALSIRGYDVEGIHGDMKQERREKVLRRFKRGSIKIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+KG+S   +    +   E 
Sbjct: 295 VATDVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGISFTFVTPREREYLEL 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI 416
           +       ++ +  PS+   ++   ++  Q  + +       D ++    LL ++D  K+
Sbjct: 355 IEDTTKSKMLKQHVPSIGDAKDARYRQAAQKLIGIAESAKTHDLEEAAQKLLEEYDAVKL 414

Query: 417 AAGFLRI-HRAGLCAPEEITPVSLVSGRDRF-----RDDSRAFKVGGGSRDNFKGSSWFS 470
            +  L++  +    AP  +T  S V  + +         S+  K G GS         +S
Sbjct: 415 VSAALKMVTKQSSDAPVTLTDESPVRMKKKPMKSSGSRYSKDSKPGSGSSSYKGKGKSYS 474


>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
 gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
           FI9785]
          Length = 484

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 234/483 (48%), Gaps = 13/483 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSI------QAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +  ++    P+ E   +       +     LDS      +    LL  +    + A
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVA 414

Query: 419 GFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSWFSLSVG 474
             L+ + +       +ITP   +  + +  ++    R FK GG   + +          G
Sbjct: 415 ALLKDLSKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSAR-KGG 473

Query: 475 SKQ 477
            K 
Sbjct: 474 RKH 476


>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 506

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 235/478 (49%), Gaps = 11/478 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+   G+   T +QEA +   L   DV+  AQTG+GKT AFGL +   +  + 
Sbjct: 17  LEEDLLKAIKRSGFEEATPIQEATIPLVLAGIDVIGQAQTGTGKTAAFGLPILQHVDVKE 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         A+ ++PTRELA+Q   EL  L       V V  GG  + R+ + L++   
Sbjct: 77  EHI------QAIVVSPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKLLKHVPQ 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI  K +++SH+K +VLDEADEMLD+GF +DIE I+ + P++R+ L+FS
Sbjct: 131 ILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEMLDMGFLEDIEAIIKNVPEERQTLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI ++ + +  +   V I ++      +D   V     ++ + +  IL     + 
Sbjct: 191 ATMPKAIRSIGEKFMHEPQVVKIKAKELTTDLVDQYFVKAREYEKFDIMTRILDVQAPEL 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   +K L    +    + G+L+QQ R N L+  ++GR  + +ATDVAAR
Sbjct: 251 TIVFGRTKRRVDELSKGLEARGYNAAGIHGDLTQQRRMNILKKFKEGRLDILVATDVAAR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG  G+SV  +  N       + R     
Sbjct: 311 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGISVTFVTPNEMEYLRVIERLTKKR 370

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIAAGFL--R 422
           +     P+ +          L D   L      EK  K  + LL ++D  ++ A  L   
Sbjct: 371 MEPLRPPTEKEAFIGQISSALGDIKDLVEKTETEKYEKQANELLEQYDAVELVAALLNEM 430

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                   P +ITP   +  R          +   G     KG      + G  +K +
Sbjct: 431 TKDDASSVPVKITPERPLPRRKSSNKKFYGSRNRNGKGSKRKGYYNDRKN-GRDKKYD 487


>gi|172058976|ref|YP_001815436.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991497|gb|ACB62419.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 481

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 151/543 (27%), Positives = 255/543 (46%), Gaps = 70/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   I EA+ + GY   T VQ+A++   L EKD++V ++TGSGKT +FG+ L 
Sbjct: 4   KPFTDFQLSTPILEAIEQLGYHTPTDVQQAVIPVALSEKDIIVKSRTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELA+QV  ++  +     +      G      +  
Sbjct: 64  ELVEWEENK------PQALILTPTRELALQVTEDVMNIGRYKRIKATAVFGKQPFRGQVA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++  +K +VLDEADEML++GF D ++ IL   PK+
Sbjct: 118 ELKQKTHIVVGTPGRVLDHLERGTLSLEKVKYLVLDEADEMLNMGFLDQVDTILKQLPKQ 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    I  L+  Y +   +V I ++  + ++I++  + V    +   + ++ 
Sbjct: 178 RTTMLFSATFPQDIHQLSDRYMQSPKQVEITTKATEIAEIEHSYIKVTDKTKFAVLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++FC T+  V    + LA   + V  + G + Q ER   ++  R G  R  +
Sbjct: 238 VVENPDRCMIFCRTKEHVDFVAQGLASMDYPVEKIHGGMEQDERLAVMKAFRAGEFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI  ++    E+ +HR+GRTGRAG  G ++ ++ ++  RR   +
Sbjct: 298 ATDVAARGIDIENITHVIQYDMPVEKESYVHRTGRTGRAGALGKAISLVTESDMRRLREV 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +    ++    AP+     ER+  R         +    E+K+    +     E++ A 
Sbjct: 358 EQYRGEAIERRQAPT-----ERELIR---------TADAFEEKITTADVRASKTEQLNAD 403

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 404 IMKLYFNG----------------------------------------------GKKKKL 417

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G+  Q IG I +Q  +T+VE+      L+ R +K    KG QLK   
Sbjct: 418 RAVDFVGTIAKIEGMTAQDIGIITIQDTVTYVEILNGKGPLVLRAMKTTKVKGKQLKVYE 477

Query: 538 GEK 540
             K
Sbjct: 478 AFK 480


>gi|147921542|ref|YP_684642.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110620038|emb|CAJ35316.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 497

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 149/486 (30%), Positives = 236/486 (48%), Gaps = 14/486 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N+   I  A+ E G+   T +QE  +   +  KD++  A+TG+GKT AFG+ + 
Sbjct: 2   VKFTELNLTPSIVRAVHEMGFEEATPIQEQAIPLAMEGKDLIGQARTGTGKTAAFGIPMV 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         +     L + PTRELAVQV  EL  +    G+      GG     + +
Sbjct: 62  EAIRPT------SKGVQGLVVVPTRELAVQVAEELTRIGKVRGIRSVAIYGGQDFRSQVK 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   HIVVGTPGRL +H+R + +  S ++  VLDEAD+MLD+GF D+ E IL   P++
Sbjct: 116 ALEELPHIVVGTPGRLLEHMRREYVRTSDIRIAVLDEADKMLDMGFIDEAEKILKKLPER 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+SP +  LA+ Y KD   +    E           + +    +  A+  +L
Sbjct: 176 RQTLLFSATLSPPVQMLARKYLKDPELIEFEEEGITVPTTVQYYIEMPEKQKFEALTRLL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF +TR  V    K L E  +  + L G+L Q +R N L   + G   + +
Sbjct: 236 DQEKPELAIVFVATRIRVGELAKALVERGYHALGLHGDLLQYQRENTLDKFKAGEVSILV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG  G +   +    +   E +
Sbjct: 296 ATDVAARGLDIQGVTHVYNFDIPRDPDSYVHRIGRTGRAGNAGTATTFVTPKDKTALEAI 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIA 417
            +  +  +  +PAP      E++ + +++       I+     +   + LL   DP  I 
Sbjct: 356 EQAIDHQITSKPAPGGAESTEKNIEAVIEKIRGEIEIRDLSFYRDYAESLLNSGDPATIL 415

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  LRI    L   EE   + L    +    D +A K  G    + K  S +S   G K 
Sbjct: 416 AAALRI----LSKAEEKPQIRLTEIPEPVAPDRKAEKGHGKGTGHPKKGS-YSKGYGHKD 470

Query: 478 KAEARW 483
           + + + 
Sbjct: 471 EGDRKK 476


>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 523

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 133/450 (29%), Positives = 222/450 (49%), Gaps = 17/450 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N           + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGSN------RHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    +    +K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKTIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPE 414
           + R     +    APS+  + E   QR+  + L   +   +E    K   + LL   D  
Sbjct: 356 IERLTKRKIAKRRAPSLGEVLEGQ-QRLAVESLIEMASNTEELALFKVNAEELLNDTDSV 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + A  L++    L    + TPV++   + 
Sbjct: 415 TLIAAALKL----LTKEPDTTPVNITEEKP 440


>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
 gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
          Length = 520

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 229/474 (48%), Gaps = 10/474 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + E++ + G+   T +Q   +   L+  DV+  AQTG+GKT AFGL + 
Sbjct: 12  MKFNELGLDSALLESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFGLPML 71

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +               L IAPTRELA+Q   EL  L     + V    GG  ++R+ R
Sbjct: 72  QKIDPSK------KGVQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIR 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    IVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P+ 
Sbjct: 126 QLKENPQIVVGTPGRLLDHISRRTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPEN 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I S     + ID   V     ++ + +  +L
Sbjct: 186 RQTLLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++    + +
Sbjct: 246 DVQTPELTIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GMSV  +  N       +
Sbjct: 306 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 365

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+     E   +  ++  D +         K+ V  LL +++PE++A
Sbjct: 366 EELTRKRMTSLRPPTQTEALEGQTKTAIESIDEMMKTVEPRRFKEAVSYLLDEYEPEELA 425

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           A  L+ + +     P +ITP   +  R R        +          G   F 
Sbjct: 426 ALLLKSMIKDPTEIPVKITPERPLPSRKRGNSRGNYNRNDRKDNRGRNGKGSFK 479


>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 492

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 233/475 (49%), Gaps = 16/475 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ +
Sbjct: 61  QQLDLD------LRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIK 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              Q+  HI+VGTPGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P 
Sbjct: 115 QLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +  +   V I ++      +D   V     ++ + +  +
Sbjct: 175 ERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF  T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + 
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +     +     P+ +          L D   L  D+     +     LL ++D  ++
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 417 AAGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            A FL     +     P +ITP   +  R + R +    +      DNFK S  F
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGN----DNFKRSKRF 465


>gi|228994170|ref|ZP_04154070.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
 gi|228765622|gb|EEM14276.1| ATP-dependent RNA helicase dbpA [Bacillus pseudomycoides DSM 12442]
          Length = 481

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 139/538 (25%), Positives = 242/538 (44%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   + + I  AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELA QV  ++  +     +      G     R++ 
Sbjct: 64  EMVEWEENK------PQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTD 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L+  Y K    + I +       I++  + V   ++ + + +I 
Sbjct: 178 RMTMLFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   + G+ R  +
Sbjct: 238 TLENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +    +R    +
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +  A               ++K     ++ K     +   
Sbjct: 358 EEYIGFEIQKIEAPSKEELAKGKA-------------AFEDKINAKPIMKKEKSAGLNKD 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+    IG I +Q ++++V++      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKV 476


>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 492

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 233/475 (49%), Gaps = 16/475 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ +
Sbjct: 61  QQLDLD------LRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIK 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              Q+  HI+VGTPGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P 
Sbjct: 115 QLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +  +   V I ++      +D   V     ++ + +  +
Sbjct: 175 ERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF  T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + 
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +     +     P+ +          L D   L  D+     +     LL ++D  ++
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 417 AAGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            A FL     +     P +ITP   +  R + R +    +      DNFK S  F
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGN----DNFKRSKRF 465


>gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 492

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 233/475 (49%), Gaps = 16/475 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFGELGLDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ +
Sbjct: 61  QQLDLD------LRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIK 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              Q+  HI+VGTPGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P 
Sbjct: 115 QLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +  +   V I ++      +D   V     ++ + +  +
Sbjct: 175 ERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF  T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + 
Sbjct: 235 IDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +     +     P+ +          L D   L  D+     +     LL ++D  ++
Sbjct: 355 IEKLTKKRMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEV 414

Query: 417 AAGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            A FL     +     P +ITP   +  R + R +    +      DNFK S  F
Sbjct: 415 VAAFLNNMTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGN----DNFKRSKRF 465


>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 484

 Score =  236 bits (601), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 147/483 (30%), Positives = 233/483 (48%), Gaps = 13/483 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSI------QAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P + +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +  ++    P+ E   +       +     LDS      +    LL  +    + A
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVA 414

Query: 419 GFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSWFSLSVG 474
             L+ + +       +ITP   +  + +  ++    R FK GG   + +          G
Sbjct: 415 ALLKDLSKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSAR-KGG 473

Query: 475 SKQ 477
            K 
Sbjct: 474 RKH 476


>gi|85860953|ref|YP_463155.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85724044|gb|ABC78987.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 572

 Score =  236 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 164/581 (28%), Positives = 260/581 (44%), Gaps = 20/581 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK F    I   I + L   G+  +T VQE I+   L  + D++  AQTG+GKT AFG+ 
Sbjct: 1   MKTFAEFEINTDIMKGLDGLGFSVMTPVQEKIIPIVLNRQTDLVGLAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHR 116
           L         R        AL + PTREL VQV  +L  +        +    GG S+  
Sbjct: 61  LIQLTDTRLKR------TQALVLCPTRELCVQVAGDLNLMGRYVQKLKIVPVYGGASIVS 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L+ GA +VV TPGRL D IR   +++S +  VVLDEADEML +GF+D++  IL  +
Sbjct: 115 QTEELRKGAQVVVATPGRLHDLIRRGAVDLSGVSWVVLDEADEMLQMGFQDELNAILAVT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  +  L+FSAT+   +  +A NY KD + + +   N    ++D+   +V+   R  A+ 
Sbjct: 175 PDSKNTLLFSATMPREVAAIAANYMKDPLEIIVGRRNAGAENVDHIYYVVSARHRYQALR 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I   +    AI+FC TR         L E  +   AL G+LSQ +R + +   R    R
Sbjct: 235 RIADMNPELYAIIFCRTRLETREIVDKLIEDGYSADALHGDLSQSQRDHVMHKFRSRNIR 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ DL  VI+  L        HRSGRTGRAG+KG+S+ +I    + + 
Sbjct: 295 MLVATDVAARGLDVNDLTHVINYSLPEESSGYTHRSGRTGRAGKKGISIALIETREKHKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             + R    +      PS   I +R      + + +  +  + I       +   L   D
Sbjct: 355 RAIERCLKKNFEEGRIPSGHEICKRRLLSHMEAVKKTEIDAEHIDP-FLPAISKTLESLD 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG-SRDNFKGSSWFSL 471
            E++   F+ +      A     P      +   +  +R    G      + K  +   +
Sbjct: 414 REELIKRFVSMEFNRFLASYRNAPDLNTFEKTPPKKKTREAAAGKPYRLASRKKFTPLFI 473

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--K 529
           + G K     + LM  L  ++G+    IG I V    + +E  +     + + +K     
Sbjct: 474 NAGKKDGISPKRLMRDLSDAAGMPDVRIGRIEVNNTTSLLEADSRFAPKILQALKSLTIN 533

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
           G  +      K   R    +  +  +S     +R  + + A
Sbjct: 534 GRYVAVEIDRKTAIRNRPEN--RRYDSSTAKDRRKGQSRPA 572


>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
 gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
          Length = 485

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 146/486 (30%), Positives = 235/486 (48%), Gaps = 18/486 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSI------QAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL+ +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +  ++    P+ E   +       +     LD            LL  +    + A
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTAEASQLLDDYSAVDLVA 414

Query: 419 GFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG------GGSRDNFKGSSWFSL 471
             L+ + +       +ITP   +  + +  +++R FK           R + K ++    
Sbjct: 415 ALLKNLSKDAESVKVKITPEKPLPFKSKHGNNNRHFKRNFKRGGDRNERYHRKPNAR--- 471

Query: 472 SVGSKQ 477
             G K 
Sbjct: 472 RGGRKH 477


>gi|229176129|ref|ZP_04303622.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
 gi|228607364|gb|EEK64693.1| ATP-dependent RNA helicase dbpA [Bacillus cereus MM3]
          Length = 481

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 143/538 (26%), Positives = 249/538 (46%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F N  + + +  AL+  GY + T VQ  ++   L++KD++V +QTGSGKT +FG+ L 
Sbjct: 4   QSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ 
Sbjct: 64  EMVEWEENK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  P K
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L++ Y      + I +       I++    V   ++ + + ++ 
Sbjct: 178 RMTMLFSATLPEDVEKLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEKLSLLKDVT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +
Sbjct: 238 MIENPDSCIIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I     R  E +
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFITPYENRFLEEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +  E  PS             ++ +       +EK     ++ K     +  G
Sbjct: 358 EEYIGFEIPKELTPS-------------KEEVIKGKAVFEEKIYAKPIIKKDKNADLNKG 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++                                               + G K+K 
Sbjct: 405 IMKLYF----------------------------------------------NGGKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G++   IG I +Q ++++VE+      L+ + ++    KG QLK 
Sbjct: 419 RAVDFVGTIAKIQGVSADDIGIITIQDNVSYVEILNGKGPLVLKVMRNTTIKGKQLKV 476


>gi|229007762|ref|ZP_04165353.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
 gi|228753532|gb|EEM02979.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides Rock1-4]
          Length = 481

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 139/538 (25%), Positives = 243/538 (45%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   + + I  AL+   Y   T VQ  ++   L +KD++V +QTGSGKT +FG+ L 
Sbjct: 4   KSFKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P AL + PTRELAVQV  ++  +     +      G     R++ 
Sbjct: 64  EMVEWEENK------PQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTD 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L+  Y K    + I +       I++  + V   ++ + + +I 
Sbjct: 178 RMTMLFSATLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + L    +    + G + Q++R   +   + G+ R  +
Sbjct: 238 TLENPDSCIIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +    +R    +
Sbjct: 298 ATDVAARGIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +    APS E + +               +  ++K     ++ K     +   
Sbjct: 358 EEYIGFEIQKIEAPSKEELAKGK-------------VAFEDKINAKPIMKKEKSAGLNKD 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLYFNG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+    IG I +Q ++++V++      L+ + +K    KG QLK 
Sbjct: 419 RAVDFVGTIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKV 476


>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 532

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 235/447 (52%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNI------QALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I ++K +VLDEADEML++GF +DIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV ++  N       +
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQ-GDEKKMVDVLLAKHDPEKIA 417
                  +      S++  R    +    +    ++++   D +  VD L +K+  E++A
Sbjct: 355 EDLTKKRMTALEPASLQEARVGKIKNAAGEVDQIVNAVDVKDIQSEVDKLTSKYSSEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AALLS---SVADLEKQNTPVEITRERP 438


>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 518

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 233/447 (52%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  ENIDLDNKNI------QALIVSPTRELAIQTADELKKLGHDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I  +K +VLDEADEML++GF DDIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEMLNMGFLDDIEAIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V    +++ + +  IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRARDNEKFDTMTRIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPTLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLSQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG +G+SV  +  N       +
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDE-KKMVDVLLAKHDPEKIA 417
                  +      +++  R    +    +   L +++  D+ +  V+ L A++  E++A
Sbjct: 355 EDLTKKRMTPLEPATLQEARIGKIKNAAGEVAKLVNTVDADDIQSEVEKLTAQYSSEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AALLS---SVADLEKQNTPVEITRERP 438


>gi|225181200|ref|ZP_03734646.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168169|gb|EEG76974.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 470

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 145/475 (30%), Positives = 233/475 (49%), Gaps = 16/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +    + + +A+S  G+   T +QE  +   L+  D++  A TG+GKT AFG+ +
Sbjct: 1   MTKFNDFAVSENVLQAVSNMGFEEATPIQEQAIPTALKGLDLIGQAHTGTGKTAAFGVPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L          S   AL + PTRELAVQV  EL  +    G+      GG  + R+ 
Sbjct: 61  VEKLEKNG------STVQALVVTPTRELAVQVAEELNKIGQYKGIRTLPVYGGQDIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ    I+VGTPGRL DHIR + + +  +  VVLDEADEML++GF +DIE IL  +P+
Sbjct: 115 RGLQKRPQIIVGTPGRLLDHIRRRTVRLGQVSMVVLDEADEMLNMGFIEDIEAILQETPQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  LA+ + +D  ++++ S+     + +   +++    + + +  +
Sbjct: 175 ERQTLLFSATMPGPIEQLARRFMRDPQKISVRSKEVTVPNTEQFHMVMEERQKFDVLCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V    + L +  +    + G+++Q  R + ++  +DG   + 
Sbjct: 235 LDTQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDMTQARRDSVMRQFKDGSIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  GM+V  +          
Sbjct: 295 VATDVAARGLDITGVTHVYNFDIPQDPESYVHRIGRTGRAGNTGMAVTFVSNREVGHLRT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           +       +     P+V+   E   QRI  + L       D    + + D LL +HD E 
Sbjct: 355 IEYGTKSRIPRLSTPTVKEAIEGQ-QRIAVEKLLKTVESEDITHYQPLADELLNEHDAET 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           I A  L++    L    + TPV L     ++         GG  R N        
Sbjct: 414 ILAAALKM----LTKEPDTTPVKLTEEAPQWSKRQNKPYQGGHYRRNKHKGGRGR 464


>gi|284042564|ref|YP_003392904.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283946785|gb|ADB49529.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 481

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 237/528 (44%), Gaps = 65/528 (12%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + EAL + GY N + +QE  + P L   D++  AQTGSGKT AFGL L
Sbjct: 1   MTTFADLGLSAPVLEALRDVGYENPSPIQEQAIPPLLAGNDMIGQAQTGSGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   +          AL + PTREL +QV + L    A+ G+ V    GG  +  ++
Sbjct: 61  MEYVDPSDRDV------QALVLTPTRELCIQVTQALRSYGARKGIDVVAVFGGAPIRSQQ 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  IVVGT GR+ D I    L +   + VVLDEADEMLDLGF +D+E IL  +P 
Sbjct: 115 AQLRAGGQIVVGTVGRVKDLISRHSLMLHGTRFVVLDEADEMLDLGFLEDVEKILALTPG 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT+ P I  L++ Y  + V V + +       ++  ++ ++  D+ + +  +
Sbjct: 175 SRQTALFSATMPPEIRKLSERYLYNPVHVKVRAATLTVDTVEQFSLEMSQRDKPDMLGTV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+    +  + L +    V AL G++SQ +R   +   + GR  + 
Sbjct: 235 LESEKPDQAIVFVRTKIRCDQLYRTLRDRGMNVKALHGDMSQGQRDGVMLSFKSGRLPIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V++ ++ ++P+  +HR GRTGR GR G ++       +R  E 
Sbjct: 295 VATDVAARGLDISSVTHVVNFDVPTSPDVYVHRIGRTGRVGRSGRAITFYDSKQKRDIEA 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +    AP     R                                       
Sbjct: 355 IERHTRTPM----APWTAGAR--------------------------------------V 372

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             LR+         +    +  +G     D +R               +   ++ G  Q 
Sbjct: 373 AALRVEVKPKRHESKPHDAAPTNGDRAATDGAR---------------TRLVVAGGLAQG 417

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            E + L+  +  ++G++ +S+  IRV     F++V A     +   V+
Sbjct: 418 IEPKDLIHAITSAAGLDGESVRNIRVLEQFAFLDVPAADAARVVEQVE 465


>gi|194246516|ref|YP_002004155.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
 gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
          Length = 531

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 150/536 (27%), Positives = 265/536 (49%), Gaps = 29/536 (5%)

Query: 3   IFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +FEN   +PQ   +AL E  ++  T++Q  +++  +   D++  AQTG+GKT AFG+ + 
Sbjct: 4   LFENFNILPQT-QKALKELNFLKPTAIQNLVISEMIEGYDIIGQAQTGTGKTFAFGIPII 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
             +              +L + PTRELA+QV +E + L      + +AV  GG S  ++ 
Sbjct: 63  EKIDLN------IKQTQSLILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+   HI++ TPGR+ D +  K ++ S LK + LDEADEML++GF++ +E IL   PK
Sbjct: 117 KVLETKPHIIIATPGRVIDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPK 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+ P I  +A  YQ +   + +  +N   S +     LV   D+   +V +
Sbjct: 177 KRQTVLFSATLPPTIQKIANKYQNNPKVLKVYQKNIAVSSVQQFYFLVKEFDKLKLLVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+F +T+  V      L E+ F V  L G+L Q +R   +   R+ + ++ 
Sbjct: 237 LDLENPNSVIIFANTKKDVDEINAYLQENNFSVDFLHGDLKQNQRQQVMNNFRNQKIKIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+  + +VI+ +LS   E  +HR GRTGRAG KG++   +  +   + + 
Sbjct: 297 IATDVAARGIDISSITMVINYDLSRQNEIYVHRIGRTGRAGLKGLAYSFVAPSKLSQLKS 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGD-EKKMVDVLLAKHDPEK 415
           L       ++++  P V+ I+E+  +   +    +  ++ Q D   +++  LL   D ++
Sbjct: 357 LENYLKEKLIFKTIPKVKDIQEKKLKNFQEKIFEMIKNNPQEDINDELIKNLLDNFDNKQ 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           I    L +        +EI+  +        ++ S           + +     S+++G 
Sbjct: 417 IIKALLNLIMPIKRNYQEISQTNNFKNNFVNKNFS-----------SSRNMLPLSINLGK 465

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
           K       L+ +L     I  + +G I+   + +  E+     +     +K  K I
Sbjct: 466 KDMINPALLLKILHEKFNIYSKYVGNIKHLSNESIFEIP----NHFWMKIKNKKNI 517


>gi|168207624|ref|ZP_02633629.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
 gi|170661029|gb|EDT13712.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens E str.
           JGS1987]
          Length = 478

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 250/543 (46%), Gaps = 68/543 (12%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  AV  G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAVIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++     
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKY---- 350

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                          +E + E     I +  L  D    DE K    +  +    ++   
Sbjct: 351 ---------------LENVEEYIGYEIRKASLPSD----DEVKAGRKIFKESQKVQL--- 388

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                                             +     ++         ++ G K+K 
Sbjct: 389 ---------------------------------KESKKPKKEVHGDIVKIHVNGGKKKKI 415

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKYLG 537
            A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K   
Sbjct: 416 RAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQK 475

Query: 538 GEK 540
             K
Sbjct: 476 ARK 478


>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 523

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 134/450 (29%), Positives = 223/450 (49%), Gaps = 17/450 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N           + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGSN------RHVQVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    +    +K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIRELAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDLQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPE 414
           + R     +    APS+  + E   QR+  + L   +   +E    K   + LL   D  
Sbjct: 356 IERLTKRKIAKRRAPSLGEVLEGQ-QRLAVESLIEMAGNTEELAPFKVNAEELLNDTDSV 414

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + A  L++    L    + TPV++   + 
Sbjct: 415 TLIAAALKL----LTKEPDTTPVNITEEKP 440


>gi|326802990|ref|YP_004320808.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 508

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 149/485 (30%), Positives = 249/485 (51%), Gaps = 20/485 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +A+   G+   T +Q   +   L  +DVL  AQTG+GKT AFGL L 
Sbjct: 1   MKFEELNLDPRLLQAVKNMGFEETTPIQAQTIPYALEGRDVLGQAQTGTGKTAAFGLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +         AL IAPTRELA+Q G+EL  L  + GV      GG ++ R+  
Sbjct: 61  EKIDHHTEHI------QALVIAPTRELAIQNGQELYRLGKEKGVRTVNVYGGANIRRQIH 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ GA +VVGTPGRL D ++ K LN++ ++ +VLDEADEML++GF +DIE I+ ++P  
Sbjct: 115 QIKKGAPVVVGTPGRLIDLMKRKVLNLNFIETLVLDEADEMLNMGFIEDIETIIRATPSN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  + +++ +D V V I ++      ID         ++ + +   +
Sbjct: 175 RQTLLFSATMPKEIQRIGEHFMQDPVTVKIEAKEMTADTIDQYFTKCHDREKFDLLTRFI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               AK AIVF  T+  V   ++ L E  +Q   + G+LSQ++RS+ ++  +DGR  + +
Sbjct: 235 DVSHAKLAIVFARTKRRVDEVSRGLIERGYQAEGIHGDLSQEKRSSIMKDFKDGRLEILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  V + ++  +PE+ +HR GRTGRAG+ GMS+  +  +       +
Sbjct: 295 ATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSITFVSNHEMGYLRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
               +  +     P+ E       ++ L   + L  +      +++V+ L   +  E++A
Sbjct: 355 ENLTHKKMSPLRPPTEEEAFTGQIKQSLAAVEELLEEDRDDQYEEVVNYLSENYTAEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              +R         ++   V +    +R     R+ K  G S    +G        G   
Sbjct: 415 LAVVR------SQMKDKNDVKVSITPERPLGRKRSDKSRGKSHSKNRGQHK-----GRNH 463

Query: 478 KAEAR 482
            ++ R
Sbjct: 464 HSKPR 468


>gi|88603077|ref|YP_503255.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
 gi|88188539|gb|ABD41536.1| DEAD/DEAH box helicase-like protein [Methanospirillum hungatei
           JF-1]
          Length = 531

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 148/553 (26%), Positives = 249/553 (45%), Gaps = 39/553 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ + GY   T +Q+ ++   L   DV   A TG+GKT AFG+         N
Sbjct: 11  LSPGIIKAIRDIGYEEPTPIQQEVIPLILAGNDVAGQAYTGTGKTAAFGIPAIELCQPAN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                      + + P+RELAVQVG EL  L     G+ +    GG  + R+ + L  G 
Sbjct: 71  RNV------QTIVLCPSRELAVQVGTELNKLAMHKKGISILPVYGGQPIERQIKALSRGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DHI+ K L +  +  VVLDEAD+MLD+GFR+DIE IL   PK+R+ ++ 
Sbjct: 125 QIIIGTPGRVIDHIKRKTLLLDAVSLVVLDEADQMLDMGFREDIEEILSHIPKERQTVIL 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT  P I  +++ +QK+ + V +  +      I+   + V    + + ++ +L ++  +
Sbjct: 185 SATFPPEILDISRRFQKNPIDVKMVHQELTVPQIEQYYIEVREPAKADTLIRVLEFYQPQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC+T+ +V   +  L    F    L G ++Q +R   +   R G+  + IATDVAA
Sbjct: 245 RTIIFCNTQIAVDAVSSALKAEGFLADGLHGGMAQAQRDKVMNAFRKGQLEILIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +++LV + +   + E  +HR GRT RAGR G ++  +    + R   + R    
Sbjct: 305 RGIDVEEIDLVCNFDFPQDDEYYVHRIGRTARAGRTGRAISFVSPRERYRLRDVRRSTRA 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
                P P++  I  + A   L D    +    +      + + L    DP  +A   L 
Sbjct: 365 EPEPLPIPTLREIGGKKATTTLADADALMKTGDLTFCRPMIEEKLAEGADPVALATSLLM 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           I        E+                                 +   LS G +     R
Sbjct: 425 IAAGIATEKEDDLE------------------------KYLGEQAVVRLSAGRQDGILVR 460

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            ++ ++  S    +  IG IR+    T+++V    V  +   +   +  +++ +      
Sbjct: 461 DILQIVRNSGRNIQNDIGNIRIGQTATYIDVPEQSVKEVIDVLNGAQIGRIRLV-----A 515

Query: 543 FRGYKSSGFKSKN 555
            RG K S    + 
Sbjct: 516 KRGRKQSEIPKRR 528


>gi|302387031|ref|YP_003822853.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302197659|gb|ADL05230.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 485

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 145/528 (27%), Positives = 247/528 (46%), Gaps = 67/528 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F N  I + IG+AL   GY   T VQ  ++   L + D++V AQTGSGKT A+ + +
Sbjct: 1   MKSFRNYIISEDIGKALKGLGYDIPTEVQARVIPAALEKNDLMVKAQTGSGKTAAYAIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    ++      P AL + PTRELAVQV  +   +     +  A   G  S   E+
Sbjct: 61  CELIEWLENK------PQALILTPTRELAVQVKEDFTNIGRFKRLKAAAIYGRHSFSMEK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+   H+VVGTPGR+ DHI+   L ++ +  +V+DEAD MLD+GF   +E I+   P 
Sbjct: 115 AELKQKTHVVVGTPGRVMDHIKKGTLPLTKINYLVIDEADRMLDMGFIKQVEAIMKELPM 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+   +  ++ +Y +D + ++++  N   SDID+    V   D+   + ++
Sbjct: 175 ERMTMLFSATMPQEVKNMSLDYMRDPINIDVSEANITTSDIDHFLYYVKEEDKFELLNDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + ++FCST+  V    + L    +    + G + Q +R ++++  + G  R  
Sbjct: 235 MIVEKPDSCMIFCSTKDRVDIVCERLKNFGYPCNKMHGGMEQADRLSSIKGFKRGEYRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+  + +VI+ ++  + EN +HR GRTGRAG+KG +V  +     R    
Sbjct: 295 IATDLAARGIDIETISMVINYDIPLDKENYVHRPGRTGRAGQKGKAVSFLDPAQTRYLHD 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +      S+   P P+ E +        +Q P F      DEK      + K   +++  
Sbjct: 355 IQELIGFSIQELPKPAKEEVS-------VQKPSF------DEKMNAVPPIKKRKSDQLNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             +++                                                + G K+K
Sbjct: 402 EIMKL----------------------------------------------RFNGGKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             A   + ++    G+  + IG I +Q  LT++E+      L+   +K
Sbjct: 416 LRAANFVGVISNLEGVKAEDIGIITIQDTLTYIEILNGKGPLVLEAMK 463


>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 499

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 230/468 (49%), Gaps = 15/468 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+   G+   T +Q   +   L   DV+  AQTG+GKT AFGL +   L  + 
Sbjct: 15  LDKSLLKAVKRSGFEEATPIQAETIPLVLAGNDVIGQAQTGTGKTAAFGLPVLQQLDLD- 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNGA 125
                     A+ I+PTRELA+Q   EL  L  +    V V  GG  + R+ +   Q+  
Sbjct: 74  -----LRQIQAVIISPTRELAIQTQEELFHLGKEKRAKVQVVYGGADIRRQIKQLEQHTP 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGRL DHI+   +N++H+K ++LDEADEMLD+GF DDIE I+ + P +R+ L+F
Sbjct: 129 HILVGTPGRLLDHIQRGTINLAHVKHLILDEADEMLDMGFLDDIEKIIQAVPAERQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + +  +   V I ++      +D   V     ++ + +  ++     +
Sbjct: 189 SATMPKEILKIGEKFMVNPQIVKIKAKELTTDLVDQYFVKTKEFEKFDIMTRLIDVQAPE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+  V   ++ L    +    + G+L+QQ R N L+  ++G   + +ATDVAA
Sbjct: 249 LTIVFGRTKRRVDELSRGLEARGYNAAGIHGDLTQQRRMNVLRKFKNGDLDILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +  N       + +    
Sbjct: 309 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMDYLRVIEKLTKK 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL-- 421
            +     P+ +          L D   L  D+     +     LL ++D  ++ A FL  
Sbjct: 369 RMDPLKPPTQDEAFIGQVSSALDDIKDLIADTDTERYEAQAQALLEQYDAVEVVAAFLNN 428

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              +     P +ITP   +  R + R +    +      DNFK S  F
Sbjct: 429 MTKKDASDVPVKITPEKPLPRRKKGRRNGNYRRGN----DNFKRSKRF 472


>gi|295704908|ref|YP_003597983.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294802567|gb|ADF39633.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 130/471 (27%), Positives = 243/471 (51%), Gaps = 13/471 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F +  + + I +A+   G+   T +Q   +   +  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MKNFSDFHLSKDIEKAIHNLGFEEATPIQAEAIPIAMTGKDLIGQAQTGTGKTTAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +      A   + +APTRELA+QV  EL  +    GV      GG  ++R+ 
Sbjct: 61  IERVELSEE------AIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+   HI+  TPGRL DH++ + + ++H++  VLDEADEML++GF +DI+ IL     
Sbjct: 115 KALKKRPHIISATPGRLMDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQTILGGISS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+S  + +LA+ +      V + ++     +I+ + V +  + + + + N+
Sbjct: 175 PHQTLLFSATMSKQVQSLAQKFMNTPELVQVKAKQLTVKNIEQQYVEIPENRKFDVLCNL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF  T+  V    + L +  +    + G+L+Q +R++ ++  ++    + 
Sbjct: 235 VDLQSPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKEHTIEIM 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG KG++V  I    +   + 
Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFIIPRERHHLKV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKI 416
           +       +  +  P+   +   + + ++Q  L   + +   + K M + LL + D   +
Sbjct: 355 IEDVTKTKMSRQLPPTSSEVMAGNQEAVIQRILSTIAKREFEEYKPMANKLLEEVDSVSL 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFK 464
            +  L++  +    AP ++T V+ +  +     R   R  K   G + N++
Sbjct: 415 LSATLKLLTKESNMAPVQLTEVAPLRNKKVRAERKRGRGRKETVGRKKNYR 465


>gi|290968757|ref|ZP_06560294.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781053|gb|EFD93644.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 520

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 231/473 (48%), Gaps = 9/473 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+N+   +VI +AL+  G+   T +Q   +   L+  D++  AQTG+GKT AFG+ +
Sbjct: 2   LEKFQNLKISEVILQALNAMGFEEPTPIQAESIPVALQGADMIGQAQTGTGKTAAFGIPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L    +  P  +   + ++PTRELA+QV  EL  L   T +      GG  + R+ 
Sbjct: 62  LEKIL----KNEPTQSIQTVVLSPTRELAMQVAEELNHLAQCTTIQALPIYGGQDMERQL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH++   +++S +  +VLDEADEMLD+GF DDI  I+ ++P 
Sbjct: 118 RRLRKHPQIIVATPGRLMDHMKRGTIDLSDIHTIVLDEADEMLDMGFIDDINTIMSATPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  LA+ +  +   + + ++      I+   +      + + +  +
Sbjct: 178 TRQTLLFSATMPKPIQQLAETFLHEPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+  V    + L +  +    + G+L+Q +R + ++  R+    + 
Sbjct: 238 LDLQEPDLAIIFVRTKRRVDEVAEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+ G +   +          
Sbjct: 298 VATDVAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKSGEATTFVIPREMEHLRA 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKI 416
           + R     +    AP++    E   Q  ++  +    D   G  +   + LL+ +D   +
Sbjct: 358 IERLIKRHITRRKAPTLAQALEGAQQAAIRRLINTAEDERSGQYRGNAEELLSHYDSITL 417

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            +  +++  +     P +IT  + +  R   R   R     G  R        
Sbjct: 418 LSAAIKLLTKEPDMTPVKITEEAPLRIRRANRRTDRGTHRPGRKRKEHAERDR 470


>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 536

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 146/445 (32%), Positives = 227/445 (51%), Gaps = 11/445 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +A++  GYV  T +QE  +   L  +DV+  AQTG+GKT AFGL +   +   N
Sbjct: 20  LSQDILDAITTHGYVEATPIQEKTIPLTLAGRDVIGQAQTGTGKTAAFGLPILEHIDLNN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ ++L++   
Sbjct: 80  KNI------QALIVSPTRELAIQTAEELKKLGRDKRVDVQVVFGGADIRRQIQNLKSHPQ 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI  K + I  ++ +VLDEADEML++GF DDIE I+  +P +R+ L+FS
Sbjct: 134 ILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEMLNMGFLDDIEAIISKTPAERQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I      K 
Sbjct: 194 ATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPKL 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    L G+L+QQ RS  L   +     + +ATDVAAR
Sbjct: 254 AIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV  +  N       +       
Sbjct: 314 GLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTFVAPNEMDYLRAVEDLTKKR 373

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +      S++  R         +   L       + +  VD L AK+  E++AA  L   
Sbjct: 374 MTPLEPASLKDARIGKINNAAGEVAKLIDTTEVSEIQSQVDALTAKYTAEQLAAAVLS-- 431

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDD 449
            +     ++ TPV +   R   R  
Sbjct: 432 -SVADLEKQNTPVEITRERPLPRRK 455


>gi|168216267|ref|ZP_02641892.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
 gi|182381904|gb|EDT79383.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens NCTC 8239]
          Length = 478

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 148/543 (27%), Positives = 249/543 (45%), Gaps = 68/543 (12%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++     
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKY---- 350

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                          +E + E     I +  L  D    DE K    +  +    ++   
Sbjct: 351 ---------------LENVEEYIGYEIRKASLPSD----DEVKAGRKIFKESQKVQL--- 388

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                                             +     ++         ++ G K+K 
Sbjct: 389 ---------------------------------KESKKPKKEVHGDIVKIHVNGGKKKKI 415

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKYLG 537
            A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K   
Sbjct: 416 RAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQK 475

Query: 538 GEK 540
             K
Sbjct: 476 ARK 478


>gi|294497529|ref|YP_003561229.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347466|gb|ADE67795.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 481

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 144/531 (27%), Positives = 243/531 (45%), Gaps = 67/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +ALS   Y + T VQ  +L   L E+DV+V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSDKVAKALSSLQYNHPTEVQSKVLPIALEERDVVVKSQTGSGKTASFGIPLCELVNWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  ++  +     +  A   G     +++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAAQVKEDITNIGRFKRIKAAAVYGKSPFAKQKVELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L +  ++ +V+DEADEML++GF D +E I+   P +R  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKETLALEKIRYLVIDEADEMLNMGFIDQVEAIIQHLPSERVTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L++ Y K  V V I +     S ID+  + V    +   + ++       +
Sbjct: 185 ATLPEDIEELSRKYMKKPVDVEIKANGLTTSTIDHSVISVENERKFELLKDVTTVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+  V+     L +  +    + G + Q++R   +   + G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQEQVNTLLDDLDDFGYPCDKIHGAMVQEDRFEVMNDFKKGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +L    E+ +HR+GRTGRAG+KG ++  +    +R    +      S
Sbjct: 305 GIDIDNITHVINYDLPLEKESYVHRTGRTGRAGKKGKAITFVTPYEKRMLSEIEEYIGFS 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     PS E +++                                    A+ F      
Sbjct: 365 IPTSAPPSKEEVQQA-----------------------------------ASAF------ 383

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                        ++ R   + D         S    K       + G K+K  A   + 
Sbjct: 384 ----------TEKINERPEVKKD--------KSESLNKDIMKLYFNGGKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+    IG I +Q ++++VE+       + + +K    KG +LK 
Sbjct: 426 TIAKLDGVTADDIGIITIQENVSYVEILNGKGTKVLQAMKNKTIKGKKLKV 476


>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 551

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 144/447 (32%), Positives = 227/447 (50%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q + ++++E GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFNELGLSQELLQSIAEHGYVEATPIQEKTIPLTLVGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLNNKNI------QALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DH   K + + H+  +VLDEADEML++GF DDIE I++ +P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEADEMLNMGFLDDIEAIIEKTPAT 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V V  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKLIGVKFMTNPEHIQIEAKELTTDLVDQYFVRVRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V    + L    +    L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG +G+SV  +  N       +
Sbjct: 295 ATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGVSVTFVAPNEMDYLRAV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIA 417
                  +      +++  R         +   L       + +  V+ L  K+  E++A
Sbjct: 355 ENLTKKRMTPLEPATLQQARVGKINNAAGEVAKLIQSTDVSEIQDQVNALTEKYSAEQLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AALLS---SVADLEKQNTPVEITRERP 438


>gi|229087937|ref|ZP_04220048.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
 gi|228695405|gb|EEL48279.1| ATP-dependent RNA helicase dbpA [Bacillus cereus Rock3-44]
          Length = 481

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 141/531 (26%), Positives = 243/531 (45%), Gaps = 67/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+   Y   T VQ  ++   L  KD++V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSGEIIRALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  ++  +     +      G     R++ +L+   H
Sbjct: 71  NK------PQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI     ++  LK +V+DEADEML++GF D +E I+D  P  R  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y +  + + I +       I++R + V   ++ + + +I       +
Sbjct: 185 ATLPEDVENLSRTYMESPINIEITASGITTDKIEHRILEVREEEKFSLLKDITTVESPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V    + L    +    L G + Q++R   +   + G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  I    +R    +       
Sbjct: 305 GIDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLAEIEEYIGFE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +    APS E++ ++ A               +EK     ++ K     +  G ++++  
Sbjct: 365 IQKIEAPSKESVVKKKA-------------AFEEKINSKPIMKKEKSAGLNKGIMKLYFN 411

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 412 G----------------------------------------------GKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+    IG I +Q ++++V++      L+ + +K    KG QLK 
Sbjct: 426 TIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKV 476


>gi|299538292|ref|ZP_07051577.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
 gi|298726494|gb|EFI67084.1| ATP-dependent RNA helicase exp9 [Lysinibacillus fusiformis ZC1]
          Length = 507

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 240/483 (49%), Gaps = 17/483 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ 
Sbjct: 61  IEKIDPKNPNI------QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P 
Sbjct: 115 RALKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +
Sbjct: 175 ERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + 
Sbjct: 235 LNVHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +     P+ +   E   +  ++  + L  ++  GD +     LL  HD   +
Sbjct: 355 VEETTKKRMTPLRPPTTDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDAVDV 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A  LR     L    + TPV++   R       R+    GG           S   G +
Sbjct: 415 VAAALR----SLTREPDDTPVTITEERPLPMRRERSSNNRGGGDRGRGNR---SFGGGRR 467

Query: 477 QKA 479
             A
Sbjct: 468 DNA 470


>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 495

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 227/476 (47%), Gaps = 15/476 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN
Sbjct: 11  LSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    
Sbjct: 71  P------AIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FS
Sbjct: 125 ILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++       
Sbjct: 185 ATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAAR
Sbjct: 245 TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       + +     
Sbjct: 305 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRAR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           ++    P+ E              D L  D       +    LL K+D  ++ A  L   
Sbjct: 365 MLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLNDL 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                   P +ITP   +  R R        + G G+         F  + G   +
Sbjct: 425 TKDDASQVPVKITPERPLPSRKRNGRGGNYRRGGHGNSHRN-----FHRNGGDGHR 475


>gi|325262198|ref|ZP_08128936.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
 gi|324033652|gb|EGB94929.1| ATP-dependent RNA helicase DbpA [Clostridium sp. D5]
          Length = 481

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 146/529 (27%), Positives = 241/529 (45%), Gaps = 68/529 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I E+L+  GY   TS+Q+ ++ P L  K+V+V A TGSGKT AF + +   +  E
Sbjct: 9   ELSKEILESLNGLGYKEPTSIQQEVILPMLAGKNVVVKAPTGSGKTAAFAIPICENICWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +AP AL + PTRELAVQV  E+ ++  K  + V    GG  + ++ + L+  +
Sbjct: 69  E------NAPQALILEPTRELAVQVSEEMFYIGRKKRLKVPALFGGFPIDKQIQTLRQKS 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ DH+  + LN+  ++ +V+DEAD MLD+GF D+++ IL   P   R+ +F
Sbjct: 123 HIVTGTPGRIMDHLGRESLNLEKVRWLVIDEADLMLDMGFIDEVKKILSMVPTDCRISLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L   +  D   V  ++ N Q + I  +       ++ +  + IL     +
Sbjct: 183 SATLKPEIQELVDEFIPDMTIVMQSATNEQVAAITEKLYFTDQENKYDTFLEILINENPQ 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC TR   +   + L         L GE+ Q+ER   +   R G  R  IATDVAA
Sbjct: 243 SCMIFCGTREMTNVLFQKLRRRRIFCGMLHGEMEQRERLKTVDAFRRGCFRFLIATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID   +  V++ +  S  E  +HR GRTGR G+ G ++ ++ +  +R   ++   A  
Sbjct: 303 RGIDFEQITHVVNYDFPSKKETYVHRIGRTGRNGKCGTAISLVTEEDKRMLRQVEEYAGR 362

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            + +   P +                       DE+K      ++H   ++         
Sbjct: 363 QLPFTELPVL-----------------------DEEKEKTFWKSQHIKVEV--------- 390

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                                                 KG +  ++  G K K  A  ++
Sbjct: 391 -----------------------------KPKKGTALNKGITRLTIGGGRKSKMRAGDIV 421

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
             +C   GI    IG + ++  LT+VE+     D +   ++  K I+ K
Sbjct: 422 GTICSIEGIEADDIGIVDIRDSLTYVEILNCKGDQVMECLQA-KPIKGK 469


>gi|256848375|ref|ZP_05553818.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714973|gb|EEU29951.1| autoaggregation-mediating protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 500

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 144/479 (30%), Positives = 230/479 (48%), Gaps = 15/479 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ + GY   T +Q   +   L+ +DV+  AQTG+GKT AFGL +   +  +N
Sbjct: 20  LSKSLLRAVKQSGYEEATPIQAQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEHIDLDN 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A+ I+PTRELA+Q   EL  L     V V V  GG  + R+   L+    
Sbjct: 80  P------AIQAIVISPTRELAIQTQEELYRLGHDKHVKVQVVYGGADIRRQINSLKKHPQ 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHI    +N+ H++ +VLDEADEML++GF DDIE I+  +P+KR+ L+FS
Sbjct: 134 ILVGTPGRLRDHISRGTVNLEHIQTLVLDEADEMLNMGFLDDIEAIIKETPEKRQTLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +   + +D   V I ++      +D   V     ++ + +  ++       
Sbjct: 194 ATMPPEIKRIGVQFMRDPQMVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRLIDVQDPDL 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAAR
Sbjct: 254 TIVFGRTKRRVDELSRGLVARGYNAAGIHGDLTQDRRSKIMKKFKNGDLDILVATDVAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       + +   V 
Sbjct: 314 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVR 373

Query: 367 VVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           ++    P+ E          + D   L  D      ++  + LLA HD   + A  L   
Sbjct: 374 MLPLKPPTEEEAFRGQVASAVNDIDDLIKDEATDKYRQSAEKLLATHDAVDLVAALLNDL 433

Query: 423 IHRAGLCAPEEITPVSLVSGRDRF---RDDSRAFKVGGGSRDNFKGSSWF--SLSVGSK 476
                   P +ITP   +  R R    R  +           N      +    S G K
Sbjct: 434 TTDDASKVPVKITPERPLPRRHRHHQSRGHNSRNNHHYRGHRNSGERRHYGKRRSNGHK 492


>gi|328956669|ref|YP_004374055.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328672993|gb|AEB29039.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 533

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 234/464 (50%), Gaps = 9/464 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL +   +   N
Sbjct: 13  LAPELLKSVERLGFEEATPIQAQTIPLALEGKDVIGQAQTGTGKTAAFGLPMLQKIDVNN 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L IAPTRELA+Q   EL  L     + V V  GG  + R+ R L++  H
Sbjct: 73  RNV------QGLVIAPTRELAIQTQEELFRLSRDKKIRVQVVYGGADISRQIRALKDAPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI+ K L + H++ +VLDEADEML++GF DDIE I+   P +R+ L+FS
Sbjct: 127 IVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAERQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   +  +   V I +     S I+   V     ++ + +  +      + 
Sbjct: 187 ATMPPAIKRIGVRFMSNPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLFDVQTPEL 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V    + L    ++   + G+LSQQ+R + L+  + G+  + +ATDVAAR
Sbjct: 247 TIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKSFKTGKLDILVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++G+SV  I  N       +      +
Sbjct: 307 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVIEDLTKKT 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLR-I 423
           +     P+     E   +  + +   +    G    +K    LL  +  E +AA FL+ +
Sbjct: 367 MTPLRPPTNAEAFEGQIKASIDEVGSIIDANGLDRYEKAAAQLLETYTAEDLAAAFLKSV 426

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            +     P +ITP   + GR        + + G  S+  ++G S
Sbjct: 427 TKDADEVPVKITPERPLPGRKGGSHGGGSNRGGSASKGGYRGGS 470


>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 466

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 140/470 (29%), Positives = 235/470 (50%), Gaps = 13/470 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L
Sbjct: 1   MTTFHELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N+      A   L +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  IEKVDVKNE------AIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L + ++  VVLDEADEML++GF DDIE IL + P+
Sbjct: 115 RALKKRPHIIVGTPGRIIDHINRKTLRLDNVHTVVLDEADEMLNMGFIDDIEAILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 KRQTLLFSATMPEPIRRIAERFMNEPHIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           + R     +     P+++   E   QRI  + L       +    K+  + LL +HD   
Sbjct: 355 IERTTKRKMERMKPPTLDEALEGQ-QRIAVEKLVATVESENLSFYKRAAEELLEEHDSVS 413

Query: 416 IAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + A  +++  +     P ++T    +  +   +  +R            +
Sbjct: 414 LVAACIKMLTKEPDTTPVQLTEEPPLPVKREKKRGNRQGSQPKERTKKRR 463


>gi|294495760|ref|YP_003542253.1| DEAD/DEAH box helicase [Methanohalophilus mahii DSM 5219]
 gi|292666759|gb|ADE36608.1| DEAD/DEAH box helicase domain protein [Methanohalophilus mahii DSM
           5219]
          Length = 431

 Score =  233 bits (594), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 225/421 (53%), Gaps = 9/421 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+ + G+   T +Q   +   +  KDV+  AQTG+GKT AFG+     L  +
Sbjct: 10  NLSKDIERAVEDMGFEEPTPIQSQSIPYLMEGKDVIGQAQTGTGKTAAFGIPALEMLDVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +         L + PTRELA QV  E+  L       +    GG  + R+ + L+ G 
Sbjct: 70  SKKV------QVLVLCPTRELANQVAEEMSKLAKYQNTKMLPVYGGQPIDRQIKALRRGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV+GTPGR+ DH++ K L +  +K VVLDEADEMLD+GFR+DIEFIL  +P K++ ++F
Sbjct: 124 HIVIGTPGRIMDHLQRKTLKLDDVKMVVLDEADEMLDMGFREDIEFILSRAPGKKQTVLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L K YQ++   V    +      I+     V  + +   +  ++  +  K
Sbjct: 184 SATMPKPIIKLTKKYQQNPQMVKTVHKKLTVPQIEQYYFEVKDNAKTEVLCRLIDIYNFK 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+ +V +  + L    + V  + G++ Q +R   +   R G     +ATDVAA
Sbjct: 244 SSLVFCNTKKNVDKQVETLKARGYLVDGMHGDMRQAQRERVMSNFRKGEIETLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +E V + ++  + E+ +HR GRTGRAG++G+++        R+ + + +  NV
Sbjct: 304 RGIDVESIEAVFNYDIPQDEESYVHRIGRTGRAGKEGVAITFAFGKDIRKIKTIQKHTNV 363

Query: 366 SVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +V +  PS   VE IR     + ++  +    I   E  + ++L   +    +AA  ++
Sbjct: 364 KIVRKNVPSQSDVEDIRAEMLSQNVKKIIDYGHIGNYEHWVENLLEEDYASVDVAAALVK 423

Query: 423 I 423
           I
Sbjct: 424 I 424


>gi|294498466|ref|YP_003562166.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294348403|gb|ADE68732.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 466

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 237/471 (50%), Gaps = 15/471 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F   N+ + I +A+   G+   T +Q   +   +  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MKKFSDFNLSKDIEKAVHNLGFEEATPIQAEAIPIAMAGKDLIGQAQTGTGKTTAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +          + +APTRELA+QV  EL  +    GV      GG  ++R+ 
Sbjct: 61  IERVELGEE------GIQGIVLAPTRELAIQVAEELNRIGQVKGVKTLPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  HI+  TPGRL DH++ + + ++H++  VLDEADEML++GF +DI+ IL     
Sbjct: 115 KALKNRPHIISATPGRLKDHMKRRTIRLNHIRTAVLDEADEMLNMGFIEDIQSILGGISS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+S  + +LA+ +  D   V + ++     +I+ + + +  + + + + N+
Sbjct: 175 PHQTLLFSATMSKQVQSLAQKFMNDPELVKVKAKELTVKNIEQQYMEIPENRKFDVLCNL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF  T+  V    + L +  +    + G+L+Q +R++ ++  ++    + 
Sbjct: 235 VDLQVPDLAIVFGRTKKRVDELAEGLKKRGYAAEGIHGDLTQSKRADVIRQFKNHTIEIM 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG KG++V  I    +   + 
Sbjct: 295 VATDVAARGLDITGVSHVYNFDIPQDPESYVHRIGRTGRAGTKGLAVTFITPRERNHLKV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI 416
           +       +  +  P+   +     + I+   L         + K M + LL + D   +
Sbjct: 355 IEDVTKTKMSRQSPPTSSEVMAGHQEAIIHQVLTAIDKGEFVEYKPMAEKLLEEVDSVSL 414

Query: 417 AAGFLRIH-RAGLCAPEEITPVSLVSGR----DRFRDDSRAFKVGGGSRDN 462
            +  L++  +       ++T V+ +  +    +R R+  R   VG      
Sbjct: 415 LSATLKLLTKESNMTSVQLTEVAPLRNKKAKTERKRNRGRKETVGRKKTYR 465


>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
 gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 485

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 146/484 (30%), Positives = 233/484 (48%), Gaps = 14/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKQHDSI------QAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL+ +  K
Sbjct: 115 ALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++
Sbjct: 175 HQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +
Sbjct: 235 DVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +  ++    P+ E   +       +     LD            LL  +    + A
Sbjct: 355 EQLTHKKMMPLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTTEASQLLDDYSAVDLVA 414

Query: 419 GFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDS----RAFKVGGGSRDNFKGSSWFSLSV 473
             L+ + +       +ITP   +  + +  + +    R FK GG   + +          
Sbjct: 415 ALLKNLSKDAESVKVKITPEKPLPFKSKHGNSNHHFKRNFKRGGDRNERYHRKPNARRG- 473

Query: 474 GSKQ 477
           G K 
Sbjct: 474 GRKH 477


>gi|303238460|ref|ZP_07324994.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593858|gb|EFL63572.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 481

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 143/536 (26%), Positives = 244/536 (45%), Gaps = 68/536 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FEN  +   + +A+    Y + T VQE ++   L  KDV+V +QTGSGKT AF + + 
Sbjct: 4   SSFENYKLSSELLKAIDMLNYKSPTKVQEMVIPAVLEHKDVIVKSQTGSGKTAAFAIPIC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++      P  L I PTRELA+QV  ++  L     + V+   G  S + + +
Sbjct: 64  DLVDWDENK------PQVLVITPTRELAIQVKEDIFNLGRFKRLKVSAIYGRSSFYNQEK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+VVGTPGR+ DH+     + S +K +++DEADEML +GF + IE I+   P +
Sbjct: 118 ELKQKTHVVVGTPGRIIDHLERGTFDTSKIKYLIIDEADEMLSMGFVEQIEDIIGKLPDE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++ SAT+   I  L   Y K+ V   I  EN+    I      V  +D+ N + +I 
Sbjct: 178 RTTILLSATLPKDIAVLCDKYMKNPVYAEIEEENKAIDRIVQERYEVDENDKLNLLRDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FCST+         LA+  +    + G + Q +R   +   + G  R  +
Sbjct: 238 TLENPDSCIIFCSTKIKTDELFDELAKLNYTCEKIHGGMEQSDRLRVMNDFKQGYFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+ LVI+ ++  + E+ +HR GRTGR  R G ++  +  +  +  + +
Sbjct: 298 ATDVAARGIDIDDISLVINYDIPQDKESYVHRIGRTGRVDRNGKAITFVTPDESKYLDDI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +  +  P  EA+++++ +       F++ + G                     
Sbjct: 358 HKYIGKEIELKERPDKEAVKDKEQE-------FIEKMNG--------------------- 389

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                     APE          RD  +                       ++ G K K 
Sbjct: 390 ----------APEIKQRKGEQLSRDIIK---------------------LHINAGKKTKM 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
               ++  LC   G++   IG I +    TFVE+  +  +++ + ++  K I+ K 
Sbjct: 419 RPVDVVGTLCSIEGMSAVDIGIINIADVSTFVEILNNKGEMVLKELQ-KKPIKGKL 473


>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
 gi|167652390|gb|EDR96519.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
          Length = 466

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 147/432 (34%), Positives = 229/432 (53%), Gaps = 11/432 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +A+ E G+   + +Q A +   L  +D++  AQTG+GKT AFG+ L   +   
Sbjct: 19  NINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEKMD-- 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
               +    P A+ + PTRELA+QV  E+  L     G  V    GG ++  + R L+ G
Sbjct: 77  ----TKVKKPQAMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLKTG 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+I+VGTPGR+ DH+R   L +  LK VVLDEADEML++GFR+DIE IL   P++R+ L+
Sbjct: 133 ANIIVGTPGRIMDHMRRHTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQTLL 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  + K YQKD+  + +  +     +I+     V    +   +  +L  H  
Sbjct: 193 FSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDMHSP 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +IVFC+T+  V   T  L    +    + G+L Q +R   ++  R GR  + +ATDVA
Sbjct: 253 KLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D++ V + +L  + E  +HR GRTGRAGR G +   +      +   + R   
Sbjct: 313 ARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDVQRYCK 372

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD--PEKIAAGF 420
             +   P PS+  ++   A++ L++   L  ++       M+D  + + D    +IAA F
Sbjct: 373 TKIKARPIPSLNDVQATRAEKSLEEITGLIEENNLDKYVDMLDEFINETDFTALEIAAAF 432

Query: 421 LRIHRAGLCAPE 432
           L+   +     E
Sbjct: 433 LKKQISENEEQE 444


>gi|295402561|ref|ZP_06812510.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112527|ref|YP_003990843.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294975409|gb|EFG51038.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217628|gb|ADP76232.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 465

 Score =  233 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 237/469 (50%), Gaps = 13/469 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L
Sbjct: 1   MTTFYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N+      A   L +APTRELA+QV  EL  + A   V V    GG  + R+ 
Sbjct: 61  IEKVDVTNE------AIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGR+ DHI  K L++ ++  VVLDEADEML++GF DDIE IL + P+
Sbjct: 115 RALKKRPHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  +A+ +  +   V + ++     +I    + V    + + +  +
Sbjct: 175 KRQTLLFSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V    + L    +    + G+LSQ +R + L+  ++G   + 
Sbjct: 235 LDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +      +   
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHN 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           + R     +     P+++   E   QRI  + L       +    K+  + LL +HD   
Sbjct: 355 IERTTKRKMERMKPPTLDEALEGQ-QRIAVEKLIATVETENLSFYKRAAEELLEEHDSVS 413

Query: 416 IAAGFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           + A  +++  +     P ++T    +  +   +  +R+      S+   
Sbjct: 414 LVAACIKMLTKEPDTTPVQLTEEPPLPVKREKKRANRSGSQRERSKKRR 462


>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
 gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
           ATCC 14931]
          Length = 495

 Score =  233 bits (593), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 228/476 (47%), Gaps = 15/476 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN
Sbjct: 11  LSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    
Sbjct: 71  P------AIQALIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FS
Sbjct: 125 ILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++       
Sbjct: 185 ATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAAR
Sbjct: 245 TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       + +     
Sbjct: 305 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRAR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           ++    P+ E              D L  D       +    LL K+D  ++ A  L   
Sbjct: 365 MLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLNDL 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                   P +ITP   +  R+R        + G G+         F  + G   +
Sbjct: 425 TKDDASQVPVKITPERPLPSRNRNGRGGNYRRGGHGNSHRN-----FHRNGGDGHR 475


>gi|225011737|ref|ZP_03702175.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004240|gb|EEG42212.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 553

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 148/532 (27%), Positives = 253/532 (47%), Gaps = 19/532 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           M  F+++     + +A+ + G+   T VQ+ ++   L +  D++  AQTG+GKT AFG  
Sbjct: 1   MTTFKSLGLNTELLKAVEKLGFETPTEVQDKVIPILLEQNTDLVALAQTGTGKTAAFGFP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   + A+            L +APTREL +Q+  E+         +  V   GG ++  
Sbjct: 61  MLQRIDAKQ------RTTQGLILAPTRELCLQITNEMGIYGQALKNINIVAIYGGANIQE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ GA IVV TPGRL D I  + ++IS ++  VLDEADEML++GF +DI+ IL  +
Sbjct: 115 QANKIRRGAQIVVATPGRLKDMIGRRLVDISAIQYCVLDEADEMLNMGFYEDIKDILTHT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK +   +FSAT+ P + T+AK + K  + + + ++N    +ID++  +VA  +R NA+ 
Sbjct: 175 PKSKNSWLFSATMPPEVNTIAKKFMKKPIEITVGTKNSSAKNIDHQYFIVAARERYNALR 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +     +VFC T+    +  + L +  ++  A+ G+LSQ +R   +Q  R  R +
Sbjct: 235 AVVSMNTDLFGVVFCRTKIETQKVAEKLIQDGYKAAAIHGDLSQNQRDIVMQSFRKKRIQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ DL  VI+ +L    E   HRSGRTGRAG+ G S+  + ++ +R+ 
Sbjct: 295 LLIATDVAARGIDVDDLTHVINYQLPDEIETYTHRSGRTGRAGKLGTSIIFVTKSDRRKI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
           + +  +    +     PS E +          D +    I+ D           L     
Sbjct: 355 KLIENKLQTKLTELEMPSPEEVLTSKVIHWT-DQVKNIPIKSDLHNHLPLAIKALEDISK 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E +    L           +    S     DR  D     K+        +    F ++V
Sbjct: 414 ETLIEMMLSKEFKNFDLHPKAIEFSRDDRSDRSSDRRSDRKINAP-----QDKDRFFINV 468

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           G++ + E   L   L     +    +  + V  + +F     D  D + ++ 
Sbjct: 469 GARDQYEWTTLKDFLRSFLKLGPDDVFQVEVMKNFSFFSTHKDHRDHVLKSF 520


>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
 gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
          Length = 522

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 147/447 (32%), Positives = 233/447 (52%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q I +A++  GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDILDAIATHGYVEATPIQEKTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL ++PTRELA+Q   EL+ L     V V V  GG  + R+ +
Sbjct: 61  EHIDLSNKNI------QALIVSPTRELAIQTAEELKKLGRDKHVDVQVVFGGADIRRQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L++   I+VGTPGRL DHI  K + I ++K +VLDEADEML++GF DDIE I+ ++P  
Sbjct: 115 NLKSHPQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLDDIESIIKNTPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + I ++      +D   V +  +++ + +  I 
Sbjct: 175 RQTLLFSATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AIVF  T+  V   ++ L    ++   L G+L+QQ RS  L   +     + +
Sbjct: 235 DVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGDLTQQMRSRVLAQFKSHEINILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG KG+SV ++  N       +
Sbjct: 295 ATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +      S++  R    +    +   +   +   + +  VD L  ++  E++A
Sbjct: 355 EDLTKKRMTPLEPASLKEARIGKIKNAADEVHNIVKKTDVSEIQTEVDKLTNQYSSEELA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L    +     ++ TPV +   R 
Sbjct: 415 AALLS---SVADLEKQNTPVEITRERP 438


>gi|328948732|ref|YP_004366069.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328449056|gb|AEB14772.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 699

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 151/580 (26%), Positives = 252/580 (43%), Gaps = 55/580 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + ++   A+ ++G+   + +Q   +   L    +V+  A+TG+GKT AFGL L   L  E
Sbjct: 42  LDEITLAAIEKKGFKVPSPIQVLAIPRLLNGDANVIAKARTGTGKTAAFGLPLVQDLREE 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D         A+ + PTRELA+Q   E+           AV  GG S+  + R L+ G 
Sbjct: 102 SDHV------RAIILEPTRELAMQTATEMASFTTGKYPRTAVVYGGASMGEQMRALRRGV 155

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D I    L+IS +   +LDE DEMLD+GF +DIE I + + +  R+L+F
Sbjct: 156 EIVVGTPGRVQDLIDRGVLDISKIDYFILDEGDEMLDMGFIEDIENIFECANQDCRVLLF 215

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +  +   V       +   I+ +  ++  S++ +A+V ++      
Sbjct: 216 SATVPKEILKIAQRFMGEYEIVEEEGFEEEPLLIEQKYWVMRESEKVDALVRLIDISPDF 275

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   ++     +K L E  ++  AL G++ Q +R   L   R  + R+ +ATDVAA
Sbjct: 276 FGLVFVQRKSDADYVSKSLDERGYEAAALHGDIPQGQREKILARFRSKKTRILVATDVAA 335

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLF---- 360
           RGID+  +  V++ EL  +    +HR GRTGRAG  GM+V  + P+  +RR   L     
Sbjct: 336 RGIDIEGVTHVVNYELPFDGPTYVHRIGRTGRAGAAGMAVTFVKPEETRRRLNYLINTVK 395

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD--------------PLFLDSIQGDE------ 400
           + +   +V +  PS+E + E    R+  D                  DS+  DE      
Sbjct: 396 KSSKGEIVEDKVPSIEEVLEAKKSRLFSDIKNKLGLNQEKSESQAESDSVSADENAEANA 455

Query: 401 ----------------KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
                            K+ + L    +PE++ A  L +   G+        ++  S   
Sbjct: 456 CAEPKVPHLRKGDPIFDKLAEELCNGQNPEEVVASLLAVSYGGMLNKNRYGKINTYSVES 515

Query: 445 R-----FRDDSRAFKVGGGSRDNFKGSSWFSLSV--GSKQKAEARWLMPMLCRSSGINRQ 497
           +             +      D F G     L V  G       R +        G+  +
Sbjct: 516 KGRDRDRGGRRERDRGSRRGGDAFVGDDQLRLYVQMGWDNGYNPRKIADFFHDLLGVPGR 575

Query: 498 SIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
            + AI +      + + AD         + D+ +   +L 
Sbjct: 576 KVDAIDMADKFCLLSLPADDGRRAIELSERDRSLPHMHLD 615


>gi|163789886|ref|ZP_02184322.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159874826|gb|EDP68894.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 527

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 159/496 (32%), Positives = 244/496 (49%), Gaps = 36/496 (7%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLAPELLKSVERLGFEEATPIQGQTIPLALEGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N           L IAPTRELA+Q   EL  L     V V V  GG  + R+ R
Sbjct: 61  QKIDVNNRNV------QGLVIAPTRELAIQTQEELFRLSRDKKVRVQVVYGGADISRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGRL DHI+ K L + H++ +VLDEADEML++GF DDIE I+   P +
Sbjct: 115 ALKDAPHIVVGTPGRLLDHIKRKTLKLGHVETLVLDEADEMLNMGFIDDIETIIHEVPAE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I +     S I+   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKRIGVRFMKEPEHVQIKATTMSDSLIEQFFVRCKDFEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+  V    + L    ++   + G+LSQQ+R + L+  + G+  V +
Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLKAFKTGKLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++G+SV  I  N     R  
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGVSVTFITPNEMGYLRVI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEK 415
           E L ++A   +   P  + EA   +    I +    +D+   D  +K    LL  +  E 
Sbjct: 355 EDLTKKAMTPL--RPPTNAEAFEGQIKASIDEVGSIVDANGLDRYEKAAAQLLETYTAED 412

Query: 416 IAAGFLR-IHRAGLCAPEEITPVSLVS----------------------GRDRFRDDSRA 452
           +AA FL+ + +     P +ITP   +                            R    +
Sbjct: 413 LAAAFLKSVTKDADEVPVKITPERPLPGRKGGSHGGGSNRGGSSSKGGYRGGSSRSGKPS 472

Query: 453 FKVGGGSRDNFKGSSW 468
            + GGG+  +  G  W
Sbjct: 473 ERRGGGNASSSAGGKW 488


>gi|81429227|ref|YP_396228.1| putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 530

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 141/448 (31%), Positives = 226/448 (50%), Gaps = 10/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+S  G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +N          AL I+PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDLDNPDI------QALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   I+VGTPGRL DHI  + + + H+K +VLDEADEMLD+GF DDIE I+   P+K
Sbjct: 115 SLKDHPQILVGTPGRLLDHINRRTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  + K++  +   + + S+      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATLPAPIMKIGKSFMTNPEMIKVKSKELTADLIDQYYVRAKDFEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+  V   T+ L    +    + G+LSQQ+R + L+  + GR  V +
Sbjct: 235 DVQSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLRII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  ++    PS +   +      + D   +          +  + LL +    ++A
Sbjct: 355 EELTKKRMLPLQPPSEKEAFKGQLAAAVADINSMIEKGQLAKYNEEAEELLKQFSDVELA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           +  L+   +    P +ITP   +  R +
Sbjct: 415 SVLLK-TISKEAVPVKITPERPLPSRKK 441


>gi|317127874|ref|YP_004094156.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472822|gb|ADU29425.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 481

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 136/539 (25%), Positives = 246/539 (45%), Gaps = 69/539 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   + + I  A++   Y   T VQ  ++   + ++D++V +QTGSGKT AFG+ +
Sbjct: 3   IRSFDEYQLSEEIHRAITLMKYEKPTEVQREVIPLAMNKEDLVVKSQTGSGKTAAFGIPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E  +      P AL + PTRELAVQV  ++  +     +      G     +++
Sbjct: 63  CEMMNWEERK------PQALILTPTRELAVQVREDIANIGRFKLIKALAVYGKEPFAKQK 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+   H+VVGTPGR+ DHI  + L +  +K ++LDEADEML++GF +D+E I+ + P 
Sbjct: 117 EELKQRNHVVVGTPGRMLDHIERETLALDEIKYLILDEADEMLNMGFINDVEEIMKALPA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+   +  L   Y ++   + IAS     + I++  + V    +   + +I
Sbjct: 177 DRVTMVFSATLPKDVEDLCHKYMENPQHIEIASSGITTASIEHHLMEVNPKGKLALLKDI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  + I+FC+T+  V      L    +    L G L Q++R + +   + G  R  
Sbjct: 237 TVVENPDSCIIFCNTKEHVDTVFSELERANYSCEKLHGGLEQEDRFSVMDGFKRGNFRYL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+ ++    E  +HR+GRTGR+G KG ++  +  N  +  + 
Sbjct: 297 VATDVAARGIDVDNVTLVINYDVPMEKEGYVHRTGRTGRSGNKGRAITFVTPNDGKYLKA 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    S+    APS + +    +               +EK     ++  +   +++ 
Sbjct: 357 IEKYIGFSIPVMEAPSEKDVSGGKS-------------AFEEKLSGRRVVRNNKTARVSK 403

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             +++H  G                                              G K+K
Sbjct: 404 DIMKLHFNG----------------------------------------------GKKKK 417

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
                 +  +    G+  + IG I +Q  LT+V++      L+   ++    KG +LK 
Sbjct: 418 LRPVDFVGTIANIPGVTAEDIGIITIQDTLTYVDIHNGKGSLVLEAMEHTTIKGKKLKV 476


>gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           J1-023]
          Length = 516

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N+         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKNNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|110803350|ref|YP_698172.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
 gi|110683851|gb|ABG87221.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens SM101]
          Length = 478

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 254/545 (46%), Gaps = 72/545 (13%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +           
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNH--------- 345

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                                                   EKK ++ +      E     
Sbjct: 346 ---------------------------------------YEKKYLENVEEYIGYE----- 361

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              I +A L + EE+      +GR  F++  +    +     ++         ++ G K+
Sbjct: 362 ---IRKASLPSDEEVK-----AGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKK 413

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKY 535
           K  A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K 
Sbjct: 414 KIRAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKI 473

Query: 536 LGGEK 540
               K
Sbjct: 474 QKARK 478


>gi|260584701|ref|ZP_05852447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260157724|gb|EEW92794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 509

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 236/474 (49%), Gaps = 10/474 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + E++ + G+   T +Q   +   L  KDV+  AQTG+GKT +FGL + 
Sbjct: 1   MKFNELGLDSALLESIEKMGFEEATPIQSQTIPLALAGKDVIGQAQTGTGKTASFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N +         L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  QKINLRNRKV------QGLVIAPTRELAIQTQEELYRLGKDKKIHVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGRL DHI  K L + +++ +VLDEADEML++GF +DIE I+   P+ 
Sbjct: 115 QLKDQPHIVVGTPGRLLDHISRKTLRLDNIETLVLDEADEMLNMGFLEDIESIIKLVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I S     + ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPDDIKRIGVQFMKEPEHVRIKSSEMTATLIDQYFVKCKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    F+   + G+LSQQ+R + L+  ++    + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEMRGFRAEGIHGDLSQQKRMSVLRDFKNNHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYLRVI 354

Query: 360 FREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKIA 417
                  +     P+ +EAI  +    I Q    + S+     K+ +  LL +++ +++A
Sbjct: 355 EDLTRKRMTALRPPTQMEAIEGQMKSAIEQIDEKMKSVDTRRFKEAISYLLDEYEADELA 414

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           A  +  + +     P +ITP   +  R R  +     +          G   F 
Sbjct: 415 ALLVSGMIKDPTEIPVKITPERPLPSRKRSNNRGNYNRSDRKDNRGRNGKGSFK 468


>gi|172056656|ref|YP_001813116.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989177|gb|ACB60099.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 530

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 132/445 (29%), Positives = 229/445 (51%), Gaps = 14/445 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + + + + + G+   T +Q   +   L   D++  AQTG+GKT AFG+  
Sbjct: 1   MTTFRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       + +    AL +APTRELA+QV  EL  +     V      GG  + R+ 
Sbjct: 61  IERLD------AKSRYIQALILAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVV TPGRL DH+  K LN+ H++ V+LDEADEML++GF +DIE IL + P 
Sbjct: 115 RALRKNPQIVVATPGRLMDHMNRKTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPP 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I  +A  +      + + ++     +ID   + +  S + + +  +
Sbjct: 175 TRQTLLFSATMPPQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKESQKFDVLCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + +I+F  T+  V   T+ L +  +    L G+L+Q +R   ++  + G   + 
Sbjct: 235 IDTDSPELSIIFGRTKKRVDEMTEGLIQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++  +      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI 416
           + R  N  +    AP+++ I E + +   Q+ +     +   +   +   LL +++  ++
Sbjct: 355 IERVTNKKMSRRHAPTLDEILEGNLKLAAQELIKRVEAKNSQEYTTLAQELLEEYEAVEL 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVS 441
            A  L+    GL    + TPV + S
Sbjct: 415 IAAALK----GLTKEPDATPVQISS 435


>gi|329666667|gb|AEB92615.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 479

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 145/477 (30%), Positives = 232/477 (48%), Gaps = 12/477 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +QE  +   L EKDV+  AQTG+GKT AFGL +   L  +
Sbjct: 2   NLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQNLDKQ 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +D         A+ I PTRELA+Q   EL  L       V V  GG  + R+ R L+   
Sbjct: 62  HDSI------QAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGRL DH++   ++IS +K +VLDEADEMLD+GF  DIE IL  +  K + L+F
Sbjct: 116 AILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  + + +  D   V I  +    + ID   V    +++ + +  ++      
Sbjct: 176 SATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  T+  V   T+ L    +    + G+LSQ +R + L+  R G+  + +ATDVAA
Sbjct: 236 LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +P++ +HR GRTGRAG+ GMSV  +  N       + +  + 
Sbjct: 296 RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHK 355

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-I 423
            ++    P+ E   +       +     LDS      +    LL  +    + A  L+ +
Sbjct: 356 KMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALLKDL 415

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDS---RAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
            +       +ITP   +  + +  ++    R FK GG   + +          G K 
Sbjct: 416 SKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSAR-KGGRKH 471


>gi|310644788|ref|YP_003949547.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249739|gb|ADO59306.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 145/543 (26%), Positives = 246/543 (45%), Gaps = 69/543 (12%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + I  AL+  GY   T +Q  ++   L +KD++  +QTGSGKT A+G+ L 
Sbjct: 4   KHFADYPLSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++      P AL + PTRELA+QV  ++  +     +      G    H ++ 
Sbjct: 64  ELVDWNENK------PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+ VGTPGR+ DHI    L+++ +  +V+DEADEML++GF + ++ I+ + P  
Sbjct: 118 ELKQRTHVAVGTPGRVLDHIERGTLSLNRIAYLVIDEADEMLNMGFIEQVQSIIQALPND 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    +  L++ Y  D V + I +     + ID+  + V  +D+   + ++L
Sbjct: 178 RVTMLFSATFPEDVAKLSRKYMNDPVEIEIKATGVTTATIDHSLIQVREADKLALLQDLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+  V    + LA+  +    + G + Q ER   +   R G+ R  I
Sbjct: 238 VVENPDSCIIFCRTQEHVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ +I     +R   +
Sbjct: 298 ATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAITLITPKDSKRLADI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS EA+              L     + K  V   L     E++   
Sbjct: 358 EAYIGFAIPQVKAPSEEAV-------------DLHREDFERKLHVKTALKNDKREQLNQQ 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLNFNG----------------------------------------------GKKKKL 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G+    IG I +  ++T VE+      L+   +K    KG  LK   
Sbjct: 419 RAVDFVGTIAKLDGVTADDIGIITILDNVTDVEILNGKGPLVLEIMKNTTVKGKLLKVRK 478

Query: 538 GEK 540
           G K
Sbjct: 479 GHK 481


>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
 gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
          Length = 471

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 235/472 (49%), Gaps = 14/472 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++     +AL+  G+   T +QE  +   L  KDV+  AQTG+GKT AFG+ +
Sbjct: 1   MTTFQELSLSNATLKALAGMGFEEATPIQEQAIPAALAGKDVIGQAQTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A +           + I PTRELAVQV  EL  +    G+      GG  + R+ 
Sbjct: 61  IENIDAGSGDI------QGIVITPTRELAVQVAEELNRIGEFRGIHTLPIYGGQDIKRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L+    I+VGTPGRL DH+  +  +++ +++ VVLDEADEMLD+GF +DIE IL  +P
Sbjct: 115 NGLKRRPQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDEADEMLDMGFIEDIEEILKRTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ L+FSATI   I  LA+ + KD   + I S++   S  +     V    +   +  
Sbjct: 175 EGRQTLLFSATIPAPIRKLAERFMKDPQTIGIKSKSMTVSGTEQAYYEVPEKHKFEVLCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF  T+  V   TK L E  +    + G+L+Q +R + ++  ++G   V
Sbjct: 235 LLDVQLPALAIVFVRTKRRVDELTKALGERGYPAEGIHGDLAQSKRDSVMRGFKEGTTEV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+KG ++  +         
Sbjct: 295 LVATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGTAITFVTPREMGLLR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEK 415
            + +    S+   P PS     E   Q +++  L +   S     + +   LL  +D   
Sbjct: 355 FIEKITRHSIERRPIPSAAEAFEGKQQALVESLLSVAGGSDISKYRGVAQDLLDMNDSVT 414

Query: 416 IAAGFLRI---HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + +  L++    R  +    E+T    +  R+  R +S   +  G     F+
Sbjct: 415 LLSAALKMLSKERDNVPETVELTEDRPMRPRNERRRESTGRRDSGQRDYEFR 466


>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes Clip81459]
 gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 1816]
 gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 220]
          Length = 517

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
 gi|217965039|ref|YP_002350717.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
 gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
 gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Listeria monocytogenes HCC23]
 gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
          Length = 516

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
 gi|224499403|ref|ZP_03667752.1| hypothetical protein LmonF1_06772 [Listeria monocytogenes Finland
           1988]
 gi|224503166|ref|ZP_03671473.1| hypothetical protein LmonFR_11698 [Listeria monocytogenes FSL
           R2-561]
 gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|254832169|ref|ZP_05236824.1| hypothetical protein Lmon1_12514 [Listeria monocytogenes 10403S]
 gi|254898962|ref|ZP_05258886.1| hypothetical protein LmonJ_04075 [Listeria monocytogenes J0161]
 gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
 gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
 gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
 gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
 gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
          Length = 520

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 506

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 149/484 (30%), Positives = 235/484 (48%), Gaps = 13/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A++  G+   T +Q   +   L+ +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSDHLLTAINNSGFEEATPIQGETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          AL I+PTRELA+Q   E+  L       V V  GG  + R+  
Sbjct: 61  QKIDFDNPNV------QALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    IVVGTPGR+ DHIR   L + H+K +VLDEADEML++GF DDIE I+  +PK+
Sbjct: 115 ALKGHPQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + +D  +V I ++      ID   V V   ++ + +    
Sbjct: 175 RQTLLFSATMPAQIKRVGVQFMRDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVFC T+  V   +K L    ++   L G+L+Q  R+  +Q  +  +  + +
Sbjct: 235 DVQDPEVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V + ++  +P+  +HR GRTGRAG+ G+S+     N       +
Sbjct: 295 ATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
            +   V ++    P+++            D   L      +K  KM D LL +++   + 
Sbjct: 355 EKLTKVRMLPLKPPTIQEAFVGQLNSAESDIADLIKKTNTDKYEKMADKLLDEYEATDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS---LSVG 474
           A  L           +ITP   +          R  + GGG   ++KGS        + G
Sbjct: 415 AALLN-DVTRDNVKVKITPERPLPHHGHGHGGHRNDRRGGGHGGHYKGSKSHRNGDRNNG 473

Query: 475 SKQK 478
           S+ +
Sbjct: 474 SRNR 477


>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
 gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
 gi|222434510|gb|EEE41675.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
           2374]
          Length = 429

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 134/428 (31%), Positives = 224/428 (52%), Gaps = 11/428 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE + + I +++ E G+   + +QE  +   L+  D++  AQTG+GKT+AF + L   + 
Sbjct: 9   FEILAE-IKKSIKEMGFEEPSPIQELTIPEALKGIDIIGQAQTGTGKTLAFTVPLLQKI- 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                F P ++P A+ + PTREL +QV  E+ +       + +    GG  + R+ R L 
Sbjct: 67  -----FIPDNSPQAIVLCPTRELCIQVAGEIGKIGSHMKKLKILPVYGGQPIGRQIRVLN 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G H+V+GTPGR+ DHI  K L++  +  VVLDEADEMLD+GFR+DIE IL  +PK+R+ 
Sbjct: 122 KGVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEADEMLDMGFREDIEKILRHTPKQRQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  + K YQK    + +A       +I          D+   +  ++  +
Sbjct: 182 LLFSATMPKEIKRITKFYQKKPKHLKVAQSQMTVPEITQYYFETKEKDKLENLTRLIDVY 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VFC+T+  V    K L    +    + G+++Q+ R   +   R+G   + IATD
Sbjct: 242 DVNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIHGDMNQKSRDKVMNKFRNGNIEILIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+P++E+V++ ++  NPE  +HR GRTGRAG  G +   +          + + 
Sbjct: 302 VAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAGNMGYAFTFVAGKEIYSLRTIKKV 361

Query: 363 ANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               +     PS   +E+I+       +++ +  D+++   K +   +    D   IAA 
Sbjct: 362 TKSKIKQRKIPSYKEMESIKNTQLMNSVKNSIEKDNLEKYVKLVEGAMEEDFDSVDIAAA 421

Query: 420 FLRIHRAG 427
            L++ +  
Sbjct: 422 LLKMVKEN 429


>gi|150391484|ref|YP_001321533.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951346|gb|ABR49874.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 484

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/529 (25%), Positives = 241/529 (45%), Gaps = 66/529 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +++S   + + T VQ+ ++   L  KD++V +QTGSGKT AF + +   +  + 
Sbjct: 11  LSDELLKSISMLNFESPTKVQQQVIPAILEHKDIIVKSQTGSGKTAAFAIPICQLVDWDE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA+QV  ++  +     + VA   G    + + ++L+   H
Sbjct: 71  NK------PQALVLVPTRELAIQVKEDMFNIGRFKRLKVAAVYGKAPFYHQEKELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH+     + S +K +V+DEADEM ++GF D IE I+    KKR  ++ S
Sbjct: 125 VVVGTPGRIIDHMEKGTFDTSQIKYLVIDEADEMFNMGFVDQIETIIKDLSKKRVTMLLS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI TL+  Y KD +   I  E+     I      V   D+   + +I       +
Sbjct: 185 ATMPSAIETLSNRYMKDPIHAEIEEESSAVDRISQERYTVEYRDKMKLLSDITIVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+T+  V      L    +    + G + Q++R   +   + G  R  +ATDVAAR
Sbjct: 245 CIIFCNTKQRVDEVNDELIRLNYTCEKIHGGMEQRDRVRVMNEFKQGYFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ ++  + E+ +HR GRTGR  R+G ++  + Q   +  + + R     
Sbjct: 305 GIDIDNISLVINYDIPQDKESYVHRIGRTGRISREGRAITFVTQYEDKFLKDIHRYIGKE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +                  ++Q P   +++   +++ V+                +I+  
Sbjct: 365 IP-----------------LMQRPEI-ETVNDSKEEFVE----------------KINTK 390

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                 +  P+S    +                           ++ G K K     ++ 
Sbjct: 391 PEVKETKGAPLSKEILK-------------------------LHINAGKKTKMRPVDIVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
            LC   G+    IG I V    TFVE+  D  +L+   ++ +K I+ + 
Sbjct: 426 TLCSIEGVTADDIGIINVVDVSTFVEILNDKGELVLEELQ-NKPIKGRL 473


>gi|168000763|ref|XP_001753085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695784|gb|EDQ82126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 638

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 165/571 (28%), Positives = 265/571 (46%), Gaps = 29/571 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL++RG  +L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  +
Sbjct: 33  VSEDIVNALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIQHIIDAH 92

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +P     P AL +APTRELA QV RE          V     GGVS+  ++R L+ G
Sbjct: 93  KESAPRHGRSPRALVLAPTRELAKQVEREFMESAPMLSTVC--VYGGVSISMQQRQLERG 150

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I VGTPGR+ D I    L + ++  +VLDEAD+ML +GF +D+E IL   PK R+ ++
Sbjct: 151 VDIAVGTPGRIIDLIDRGSLKLQNVNFLVLDEADQMLAVGFEEDVERILQQLPKNRQSML 210

Query: 185 FSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +        N       V  A +       +    L A + R      I  +
Sbjct: 211 FSATMPKWVKELSGKYLNRPLMINLVGDADDKLAEGITNLAIQLPATAKRSILSDLITVH 270

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+         +   +    AL G++SQ +R   L   R+G   V +AT
Sbjct: 271 AKGGKTIVFTQTKRDADDVAMAMGNLVAC-GALHGDISQLQREKTLNAFREGNITVLVAT 329

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++LVIH E+ ++ E  +HR+GRTGRAG+ G ++ +      R    +  
Sbjct: 330 DVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGKTGTNILMFTNQQMRTMRTIES 389

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                     AP V+ + +    ++   L++    +S+  + +   + LL +  P+  AA
Sbjct: 390 NVKCRFQMIGAPHVKDVMQASFDQVRGALKNVD--ESLAAEFRPTAESLLEEKGPDAFAA 447

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                  A L    ++ P   +   +      R  + GG    N +G S   LS  S+  
Sbjct: 448 AL-----AHLSGFSQLPPSRSLLTHEPGMTTLRLMRSGGRPALNARGVSGV-LSGLSRSA 501

Query: 479 AEARWLMPMLCRSSGINRQSI-GAIRVQPDLTFVEV---SADGVDLLRRTVKLDKGIQLK 534
           A++   +  +C    I+ + + GA+   PD    EV        D+     KL   I  +
Sbjct: 502 ADS---VGKIC---IIDDRRVNGAVFDLPDDVAKEVLALPNQDGDVFDVPTKLPPIISEE 555

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFK 565
             GG+     G    G  S+   D    RF 
Sbjct: 556 RRGGQSSGMFGRFGGGSDSRGGMDRGNDRFG 586


>gi|261314659|ref|ZP_05953856.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303685|gb|EEY07182.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 434

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 151/398 (37%), Positives = 226/398 (56%), Gaps = 36/398 (9%)

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
                ++ SE  QH+DIDY A+ V   +RD+AI+N L Y+ ++N+I+FCSTR +V     
Sbjct: 11  MHCASSVQSETSQHADIDYVAMPVPPHERDHAIINTLLYYDSQNSIIFCSTREAVKHMAS 70

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L+   F VVALSGELSQ ER+NALQ MRDGRARVC+ATDVAARGIDLP+L+LVIHA+L 
Sbjct: 71  RLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVATDVAARGIDLPNLDLVIHADLP 130

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           +NP+ LLHRSGRTGRAGRKG  V V+P + +R AERL   A +     PAPS+ A++ + 
Sbjct: 131 TNPDTLLHRSGRTGRAGRKGTCVLVVPFSRRRSAERLLHMAKLDAQTVPAPSIAAVQAKT 190

Query: 383 AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSG 442
            +RIL   +F   ++ + ++++  L  ++ PE+IA+ FL    A   A EE++   +   
Sbjct: 191 NERILNAEVFNQPVEEEYQELLKALAERYTPEQIASAFLNREVASYPAAEEVSDAPVHPV 250

Query: 443 RDRFRDDSRAFKVGGG---------------SRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
             +     R  K                    R+      WFS+S G K +A+ +WL+P+
Sbjct: 251 GGKKPRSDRFEKGDRYERGERRERGEPGERFDRNARFDGVWFSVSAGRKHRADPKWLLPL 310

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL----------- 536
           +C++  ++++ +G+I++  + T  E++A   D  R++V  ++G   K L           
Sbjct: 311 ICKAGDVSKRDVGSIKIFDNETRFEIAASKADEFRQSV-AERGTGEKSLVIRTAVAGAGG 369

Query: 537 --------GGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                   G  KP    +K  GF+  +  D   + F R
Sbjct: 370 DAAARESRGSFKPRSDKFKEGGFRDGHKSD-KPRDFSR 406


>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 492

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 227/476 (47%), Gaps = 15/476 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY   T +QE  +   L  KDV+  AQTG+GKT AFGL     +  EN
Sbjct: 8   LSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTIEHVDVEN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A   L I+PTRELA+Q   EL  L  +  V V V  GG  + R+ R L+    
Sbjct: 68  P------AIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNPQ 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DH+R   +++S ++ +VLDEADEML++GF +DIE I+  +P +R+ L+FS
Sbjct: 122 ILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +   +  D   V I ++      +D   V     ++ + +  ++       
Sbjct: 182 ATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPDL 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V   ++ L    +    + G+L+Q  RS  ++  ++G   + +ATDVAAR
Sbjct: 242 TIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ S+P++ +HR GRTGRAG  G+S+  +  N       + +     
Sbjct: 302 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRAR 361

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           ++    P+ E              D L  D       +    LL K+D  ++ A  L   
Sbjct: 362 MLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLNDL 421

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                   P +ITP   +  R+R        + G G+         F  + G   +
Sbjct: 422 TKDDASQVPVKITPERPLPSRNRNGRGGNYRRGGHGNSHRN-----FHRNGGDGHR 472


>gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
           S4-378]
          Length = 518

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 139/440 (31%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  +N
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|313638753|gb|EFS03844.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL S4-171]
          Length = 525

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 138/448 (30%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKFPQIVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLSDYKTYANQLLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|308071529|ref|YP_003873134.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
 gi|305860808|gb|ADM72596.1| ATP-dependent RNA helicase dbpA [Paenibacillus polymyxa E681]
          Length = 481

 Score =  231 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 149/543 (27%), Positives = 250/543 (46%), Gaps = 69/543 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  ALS  GY   T +Q  ++   L +KD++  +QTGSGKT A+G+ + 
Sbjct: 4   KHFTDYALSEEIVRALSSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGIPIC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++      P AL + PTRELA+QV  ++  +     +      G    H ++ 
Sbjct: 64  ELVDWNENK------PQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+ VGTPGR+ DHI    L++  +  +V+DEADEML++GF + ++ I+ + P  
Sbjct: 118 ELKQRTHVAVGTPGRVLDHIERGTLSLDRIAYLVIDEADEMLNMGFIEQVQSIIQALPSD 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    + TL++ Y  D V++ I +     + ID+  + V  SD+   + ++L
Sbjct: 178 RVTMLFSATFPEDVATLSRKYMNDPVKIEIKATGITTATIDHSLIQVKESDKLALLQDLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FC T+ +V    + LA+  +    + G + Q ER   +   R G+ R  I
Sbjct: 238 IVENPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ +I     RR   +
Sbjct: 298 ATDVAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS EA+   D +R             ++K  V   L K   E++   
Sbjct: 358 EAYIGFAIPQVKAPSEEAV---DLRR----------EDFEQKLHVKTALKKDKREQLNQQ 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLNFNG----------------------------------------------GKKKKL 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  G+    IG I +    T VE+      L+   +K    KG  LK   
Sbjct: 419 RAVDFVGTIAKLDGVTADDIGIITILDYATDVEILNGKGPLVLEIMKNTTVKGKLLKVRK 478

Query: 538 GEK 540
           G K
Sbjct: 479 GNK 481


>gi|329895875|ref|ZP_08271203.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
 gi|328922093|gb|EGG29452.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC3088]
          Length = 515

 Score =  231 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 136/463 (29%), Positives = 222/463 (47%), Gaps = 12/463 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + +AL + GY   + +Q   + P L   DV+  AQTG+GKT AF L + + +   
Sbjct: 14  NLPAYLQKALDDVGYEVPSDIQTKTIPPLLEGCDVIGQAQTGTGKTAAFALPILAKIDCR 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             +         L +APTRELA+QV    +       G  VA   GG     + + L+ G
Sbjct: 74  KKQ------TQCLVLAPTRELAIQVAEAFQSYARHLPGFQVAPIYGGTDYRTQLKQLERG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DH+R   L + +L  +VLDEADEML +GF DD+E+++   P+KR++ +
Sbjct: 128 AQVIVGTPGRVMDHMRKGSLKLDNLAHLVLDEADEMLRMGFIDDVEWVMSQLPEKRQIAL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  +A +Y +D   + +  +    + I  R  +++ + + + +  IL     
Sbjct: 188 FSATMPTAIRRIASDYLQDPQHITVTQKTVTATSIRQRVWMISGASKLDGLTRILEVEDF 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ + +     L    F   AL+G+++Q  R   +  ++ GR  + +ATDVA
Sbjct: 248 DGLIIFARTKIATTELADKLQARGFAAAALNGDMAQSAREQVISQLKKGRLDIVVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ ++  +PE  +HR GRTGRAGRKG ++       QR    + R   
Sbjct: 308 ARGLDVDRITHVVNYDIPQDPEAYVHRIGRTGRAGRKGEAILFAANREQRLLRMIERTTG 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG-DEKKMVDVLLA---KHDPEKIAAGF 420
             +     P+   + +  A++I          +G D  K     LA   +     IAA  
Sbjct: 368 QPIELMRLPTASDVADAKAEKIRDQIAIGLKRKGLDTAKEFVFHLADQLEVSASDIAAVL 427

Query: 421 -LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            + +  A   A  E+            R D            N
Sbjct: 428 AMELGYAQKRAQPEVLDSDSREPYSDRRGDRPERSQKRKPAGN 470


>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 518

 Score =  231 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 227/448 (50%), Gaps = 14/448 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP+ +       +   +       +    D K   + LL K+D   I
Sbjct: 355 VEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANQLLEKYDATDI 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           AA  L++    L    + TPV +   R 
Sbjct: 415 AAAMLKM----LAKEPDKTPVHITEERP 438


>gi|229542534|ref|ZP_04431594.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
 gi|229326954|gb|EEN92629.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
          Length = 475

 Score =  231 bits (587), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 233/473 (49%), Gaps = 11/473 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   I +A+   G+   + +Q A +   ++ KD++  AQTG+GKT AFG+ L
Sbjct: 1   MTKFSELNLSPAILKAVKRMGFEEASPIQAATIPLTMQGKDIIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   +           + IAPTRELA+QV  EL  +   + V V    GG  + R+ 
Sbjct: 61  IEKIDHRSRNI------QGIIIAPTRELAIQVSEELYRIGQDSRVHVLAVYGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGR+ DHI    L + H+  +VLDEADEML++GF DDIE IL + PK
Sbjct: 115 RALKNHPQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEMLNMGFIDDIEAILSTVPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+   I  +A+ +  +   V + ++      I+   V V   ++ + +  +
Sbjct: 175 DRQTMLFSATMPDPIRKIAERFMNNPELVRVKAKEMTVPSIEQYYVKVQEREKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V      L    +    + G+LSQ +R + L+  +DG+  V 
Sbjct: 235 LDVQSPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRKFKDGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAGR+GM++  +        + 
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +     ++    P+ +   E   +  ++       +    +   +   LLA++DP ++
Sbjct: 355 VEQTTKKRMLPMRPPTWDEAFEGQQRVTMERIGETIKEGNIDEYMSVAKELLAEYDPAEV 414

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            A  L+ + +     P  I+    +  +       +      GS +  +    
Sbjct: 415 TAAALKLMTKEPDKTPVHISEERPLPHKKDHSRRGKPAGSYKGSYNKGRKPRR 467


>gi|229014620|ref|ZP_04171734.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
 gi|228746631|gb|EEL96520.1| ATP-dependent RNA helicase dbpA [Bacillus mycoides DSM 2048]
          Length = 464

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 138/507 (27%), Positives = 237/507 (46%), Gaps = 65/507 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL+  GY + T VQ  ++   L+ KD++V +QTGSGKT +FG+ L   +  E 
Sbjct: 11  LSKEIVRALTGLGYEHPTEVQGEVIPVALQRKDLVVKSQTGSGKTASFGIPLCEMVEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELAVQV  ++  +     +  A   G     R++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI    L++  LK +V+DEADEML++GF D +E I+D  PKKR  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTLSLECLKYLVIDEADEMLNMGFIDQVEAIIDELPKKRMTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y      + I +       I++    +   ++ + + ++       +
Sbjct: 185 ATLPKDVEKLSRTYMDSPTHIEIKATGITTDKIEHILFEMREEEKLSLLKDVTTIENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+ +V    + L    +    + G + Q++R   +   R G+ R  +ATDVAAR
Sbjct: 245 CIIFCRTQENVDHVFQQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++    E+ +HR+GRTGRAG  G ++  +     R  E +       
Sbjct: 305 GIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNNGKAITFMTPYENRFLEEIEEYIGFE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +    APS E + +  A               +EK     ++ K     +  G ++++  
Sbjct: 365 IPKALAPSKEEVMKGKA-------------VFEEKIHAKPIIKKDKNADLNKGIMKLYFN 411

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 412 G----------------------------------------------GKKKKIRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            + +  G+  + IG I +Q ++++VE+
Sbjct: 426 TIAKIKGVTAEDIGIITIQDNVSYVEI 452


>gi|110799701|ref|YP_695305.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|168209167|ref|ZP_02634792.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
 gi|110674348|gb|ABG83335.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens ATCC
           13124]
 gi|170712632|gb|EDT24814.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens B str.
           ATCC 3626]
          Length = 478

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 152/545 (27%), Positives = 253/545 (46%), Gaps = 72/545 (13%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSDDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YSYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +           
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNH--------- 345

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                                                   EKK ++ +      E     
Sbjct: 346 ---------------------------------------YEKKYLENVEEYIGYE----- 361

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              I +A L + EE+      +GR  F++  +    +     ++         ++ G K+
Sbjct: 362 ---IRKASLPSDEEVK-----AGRKIFKESQKVQLKESKKPKKEVHVDIVKIHVNGGKKK 413

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKY 535
           K  A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K 
Sbjct: 414 KIRAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKI 473

Query: 536 LGGEK 540
               K
Sbjct: 474 QKARK 478


>gi|315641802|ref|ZP_07896806.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
 gi|315482477|gb|EFU73016.1| ATP-dependent RNA helicase DeaD [Enterococcus italicus DSM 15952]
          Length = 522

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 224/447 (50%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKAVERSGFEEATPIQSETIPLALSGRDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       + +S    L I+PTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKID------TSSSHLQGLVISPTRELAIQTQEELYRLGKDKKVRVMAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P  
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLETVETLVLDEADEMLNMGFLEDIESIISKVPST 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI ++   + ++   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMQNPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIIFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      L++      ++         D LL ++  + +A
Sbjct: 355 ENLTKKRMTPLRPPTEKEAFKGQLGAALEEIESKMDENGLDRYLSAADDLLERYSAQDLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  ++I       P ++ PV +   R 
Sbjct: 415 ALLVKILAKD---PTDLVPVKITPERP 438


>gi|168212498|ref|ZP_02638123.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
 gi|170715966|gb|EDT28148.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens CPE str.
           F4969]
          Length = 478

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 153/545 (28%), Positives = 253/545 (46%), Gaps = 72/545 (13%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ L 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPLC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +           
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNH--------- 345

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                                                   EKK ++ +      E     
Sbjct: 346 ---------------------------------------YEKKYLENVEEYIGYE----- 361

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              I +A L + EE+      +GR  F++  +    +     ++         ++ G K+
Sbjct: 362 ---IRKASLPSDEEVK-----AGRKIFKESQKVQLKESKKPKKEVHVDIVKIHVNGGKKK 413

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKY 535
           K  A  ++       G+  + IG I VQ   ++V++     D + +  K    KG ++K 
Sbjct: 414 KIRAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKDFKEVTIKGKKVKI 473

Query: 536 LGGEK 540
               K
Sbjct: 474 QKARK 478


>gi|150017632|ref|YP_001309886.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904097|gb|ABR34930.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 481

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 134/507 (26%), Positives = 235/507 (46%), Gaps = 65/507 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+S   +  LT VQE ++   L EKD++V ++TGSGKT ++ + +   +  E 
Sbjct: 11  LSSELLKAISMLNFKELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAIPICQLVDWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  +   +     +  A   G  S + + ++L+   H
Sbjct: 71  NK------PQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSSFYDQEKELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI     ++S +K +++DEADEML++GF + IE I+ S  K+R  ++ S
Sbjct: 125 IVVGTPGRIIDHIEKGTFDLSKIKYLIIDEADEMLNMGFVEQIETIIKSLSKERVTMLLS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL   Y KD + + I  +N+   +I      V   ++ + + +I       +
Sbjct: 185 ATMPKDIETLCNKYMKDPIHIEIEEQNKAADNICQERYNVNELNKIDLLRDITILENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+T+  V    K LA+  +    + G + Q +R   +   + G  R  IATDVAAR
Sbjct: 245 CMIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ ++  + E+ +HR GRTGRAG+ G ++  + QN  +    +       
Sbjct: 305 GIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIHEYIGKE 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +                   L++   ++++   +++                  L++   
Sbjct: 365 IP------------------LKERPKVETVNNLKEEF----------------ALKM--- 387

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                                 ++R            K      ++ G K K  A  ++ 
Sbjct: 388 ----------------------NTRPEIKETKGAKLSKEIMKLHINAGKKTKMRAVDIVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            LC   G+ +  IG I +    TFVE+
Sbjct: 426 TLCNIEGMTKDDIGIINIFDISTFVEI 452


>gi|134300131|ref|YP_001113627.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052831|gb|ABO50802.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 482

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 140/473 (29%), Positives = 234/473 (49%), Gaps = 11/473 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + E++   G+   T +QE  +   L   D++  A TG+GKT AFG+ +
Sbjct: 1   MSSFYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 + D          L I PTRELAVQV  E+  +    G+      GG  ++R+ 
Sbjct: 61  VERFSRQQDTI------QGLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+VGTPGRL DH++ K + ++ L  VVLDEADEML++GF +DIE IL   P+
Sbjct: 115 RALKKKPHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSATIS  I  LA+ + K+   + I ++      ID   V V    +   +   
Sbjct: 175 ERQTLLFSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTF 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V    + L++  +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIQSPDLAIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG ++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRL 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKI 416
           + R     +   P P+++ + E   +  ++  L +  +      +++ + LL + D   +
Sbjct: 355 IERITKHKISRRPIPTIKEVIEGQQRLAVEKLLKVVEEGGFEHYRRLAEDLLIEQDAATL 414

Query: 417 AAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            A  LR+  +     P ++T    +  +       R  K    +R   +G   
Sbjct: 415 VAAALRMITKEPDRTPVQLTEERPLRSKKAESFQPRMRKPYKDNRGKIEGKKR 467


>gi|53804102|ref|YP_114024.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53757863|gb|AAU92154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 499

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 232/478 (48%), Gaps = 20/478 (4%)

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            +APTRELA+QV    +           +   GG S+  + R L+ G H++VGTPGR+ D
Sbjct: 1   MLAPTRELALQVAEAFQSYARHLPDFHILPIYGGQSMDAQLRHLRRGVHVIVGTPGRVID 60

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R K LN+  L+ +VLDEADEML +GF +D+E+IL+ +P +R++ +FSAT+  AI  +A
Sbjct: 61  HLRRKSLNLDGLRTLVLDEADEMLRMGFIEDVEWILEHTPPERQIALFSATMPEAIRRVA 120

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           K + +      I ++      I  R  L + + + +A+  IL        I+F  T+   
Sbjct: 121 KRHLRHPKEAKIEAKTATVEAITQRYWLGSGAHKLDALTRILEVEDFDAMIIFVRTKVLT 180

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    +   AL+G++SQ  R  A+  ++     + +ATDVAARG+D+  +  V+
Sbjct: 181 EELAEKLEARGYSAAALNGDMSQALREKAVDRLKKNTLDILVATDVAARGLDVERISHVV 240

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  + E+ +HR GRTGRAGRKG ++  +    +R    + +     +     P+ + 
Sbjct: 241 NYDIPYDTESYVHRIGRTGRAGRKGQAILFVTPREKRMLSAIEKATRQRITEMRLPTHQD 300

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAAGFLRIHRAGLCAP 431
           I ER  ++       + +++ ++ +    L+ +        P  IAA    + +      
Sbjct: 301 IAERRVEQFKAQ--IMTTLEEEDLEFFRRLVQQIGREQSLSPTDIAAALTYLVQKDRPLV 358

Query: 432 EEITPVSLVS------GRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            E  P    S       R +FRD D+ A +     +D  +    + + VG    A A+ +
Sbjct: 359 PEEQPAPAESPAESREPRKKFRDRDAEAGEKKRKRKDREETGVLYRIGVGRNDGAAAKDI 418

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDKGIQLKYLGG 538
           +  +   + I  + IG I++  D + V + AD     +  L +   + K I ++   G
Sbjct: 419 VGAIANEADIPGRDIGHIKLYDDFSTVSLPADLPKKSLKRLEKIWIVGKPIDIRLWTG 476


>gi|228963331|ref|ZP_04124496.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796359|gb|EEM43802.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 228/430 (53%), Gaps = 14/430 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +      A   
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ D
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A
Sbjct: 115 HINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  +   + + ++     +I    + V    + + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGAIEVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     V    AP+++ 
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMEAPTLDE 354

Query: 378 IRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
             E   QR++ + L     +      K++ + +L ++D   + A  L++    +    + 
Sbjct: 355 ALEGQ-QRLIAEKLQSTIQNENLSYYKRIAEEMLEENDSVTVVAAALKM----MTKEPDT 409

Query: 435 TPVSLVSGRD 444
           TP++L S   
Sbjct: 410 TPIALTSEPP 419


>gi|94263991|ref|ZP_01287792.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93455584|gb|EAT05769.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 230/473 (48%), Gaps = 14/473 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L       +    P  L +APTRELA+QV  E++           +   GG ++ ++ R 
Sbjct: 69  LD------TSRKYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +R
Sbjct: 123 LQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL 
Sbjct: 183 QVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILE 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +A
Sbjct: 243 AEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +     R    + 
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPEKI 416
           +     +     PS   + +R   +  +  +      G    +E        A+ D +++
Sbjct: 363 KATRQQISRLQLPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAEIDSQQL 422

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AAG    + +A    PEE  P      + R R          G          
Sbjct: 423 AAGLAYLLQQARPLLPEEGGPPPAEEQQQRPRPQGPRKPAPTGRLRGQYPGRR 475


>gi|194015931|ref|ZP_03054546.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
 gi|194012286|gb|EDW21853.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Bacillus pumilus ATCC 7061]
          Length = 496

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 134/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + + +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L  
Sbjct: 4   TFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 64  KIDPASPNI------QAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRS 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + + +++ VVLDEADEML++GF +DIE IL + P + 
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEH 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + +    + + +  +L 
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLD 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + +IVF  T+  V   T+ L    +    + G+L+Q +R  AL+  ++G   V +A
Sbjct: 238 IQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAGR GM+V  I    +     + 
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAVTFITPREKDMLRAIE 357

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +     +  ++           LL  HD   + A
Sbjct: 358 QTTKRKMDRMKEPTLDEAIEGQQQVTIDRLRTIISENNLNFYMTAAAELLEDHDSVTVVA 417

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
             +++    +    + TPV L          +R  +  
Sbjct: 418 AAIKM----MTKEPDATPVRLTDEAPMVSKRNRNNRSS 451


>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
 gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
 gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
           FSL F2-208]
 gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
           S4-120]
          Length = 518

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 138/440 (31%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
 gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
 gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
           H7858]
 gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
 gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
 gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
 gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
 gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 519

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 138/440 (31%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 507

 Score =  230 bits (585), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 137/446 (30%), Positives = 226/446 (50%), Gaps = 14/446 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+ +   + I +++   G+   T +Q   +   L  KDV+  AQTG+GKT+AFGL L
Sbjct: 1   MALFKELGLSEDIMKSIDRMGFEEATPIQSETIPVALTGKDVIGQAQTGTGKTIAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N+          + IAPTRELA+QV  E+          V    GG  + R+ 
Sbjct: 61  LENVDVTNESI------QGIVIAPTRELAIQVAEEIYKASYHKRARVLSVFGGQDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HIVVGTPGRL DHI  K L + ++  VVLDEADEML++GF +DIE IL  +P+
Sbjct: 115 RSLKKNPHIVVGTPGRLLDHINRKTLRLQNVNTVVLDEADEMLNMGFIEDIEKILAETPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT+   I  +A+ +  + V V + ++    S+I    V V    + + +  +
Sbjct: 175 KKQTLLFSATMPAPIRAIAERFMSEPVNVKVQAKELTISNIQQFYVEVPEKKKFDTLTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   +  L    +    + G+LSQ +R + L+  ++G   V 
Sbjct: 235 LDIQSPELAIIFGRTKRRVDELSDALNVRGYSAEGIHGDLSQAKRMSVLRKFKEGSIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAITFVSPREVSYLHH 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + R     +    AP+++   E   +  ++           G  +   + LL +HD   +
Sbjct: 355 VERVTKRKMDKLKAPTLDEALEGQQKMSMEKLTQAVEAKNLGFYRNAAEQLLEEHDAITL 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSG 442
            +  L++         + TP+ L   
Sbjct: 415 VSAALKL----FTKEPDETPIRLTEE 436


>gi|223937455|ref|ZP_03629359.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893806|gb|EEF60263.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 645

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 139/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +     + +A+ + G+   + +Q   +   L+ +DV+  +QTGSGKT AF +   
Sbjct: 4   KLFSELGLSAELQKAIDKMGFEQASPIQAEAIPVLLQGRDVVGQSQTGSGKTAAFAVPAI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             +  +N       +   L + PTRELAVQV  E+  L      + A+   GG S  R+ 
Sbjct: 64  EKVDPQN------RSVQILILCPTRELAVQVSEEVHKLSIFKRGIHALPIYGGQSYERQF 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA IV+GTPGR+ DH+R   L +  +K V+LDEAD MLD+GFR+DIEFIL + P 
Sbjct: 118 MGLRQGAQIVIGTPGRVMDHMRRGTLRLDQVKMVILDEADVMLDMGFREDIEFILQAVPT 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ + FSAT+   I  L + Y +D   V I  +      ++     V    +   +  +
Sbjct: 178 ERQTVFFSATMPRPIQELIQKYARDPQSVRIEQKAMTVPTVEQFFYEVDRRFKVELLTRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  K  IVFC+T+  V      L    +    L G++SQ  R   +   R       
Sbjct: 238 IDIHDLKLGIVFCNTKRMVDDLVDHLNAQGYSADRLHGDMSQAMRDRVMNKFRKSGLEFL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+++V + +L  + E+ +HR GRTGRAGR G ++  +      + + 
Sbjct: 298 VATDVAARGIDVDDVQVVFNYDLPYDAEDYVHRIGRTGRAGRSGRAISFVAGRELFQIQH 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEK 415
           + R   + +     P+ + +    A   L     L      +K+   V +      +   
Sbjct: 358 IERFTKMKIQRAKIPTADEVETARANVFLDKLRGLLQGGEYKKQDHLVSILLEEGFNSTD 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLV--------SGRDRFRDDSRAFKVGG 457
           IA+  +   +AG  AP +                 R   R D RA +   
Sbjct: 418 IASALIHQLQAGEAAPAKTQREEERERPERPTFRERRDDRHDGRADRPSR 467



 Score = 61.9 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 21/201 (10%)

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
           GRA R     F   +  + R     REA    V   AP           ++ + P+    
Sbjct: 460 GRADRPSR--FSERREERPRRPDFSREARPEPVRHSAP---------LPKVERKPIIAKP 508

Query: 396 IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD-SRAFK 454
               E+               AA   +        P    P       +R      +A  
Sbjct: 509 EHRKEQAPASAP---------AATEAKPAPVPPSEPSRPKPAQQFPFAERREKVFQKAAP 559

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               SR      +   +SVG +    A  ++  +   +G+  + +G + V+    FV+V+
Sbjct: 560 APKHSRRTPDDFTRLYMSVGGEMGVGAGDVVGAILGETGLPAKVVGTVDVRERHLFVDVA 619

Query: 515 ADGVDLLRRTVKLDKGIQLKY 535
           ++  + +   +   +    K 
Sbjct: 620 SEHANSIISKLNRSRIKNQKL 640


>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 526

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 136/425 (32%), Positives = 216/425 (50%), Gaps = 9/425 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLDEDILKAVLDNGYDEPTPIQAETIPGVLEGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ I+PTRELA Q   E+  L       V V  GG  + R+  
Sbjct: 61  QNVDLDNPNI------QAIIISPTRELAAQTQAEIFKLGKYKKAKVQVVYGGSDIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   IVVGTPGRL DHI  K + + H+K +VLDEAD+MLD+GF  DIE I++ +P +
Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDMLDMGFLPDIEHIIEQTPSE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   +  D  ++ + S+      +D   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQITVKSKELTADLVDQYYVRSKEFEKFDILTRVL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K A++F  T+  V   +K L    +    + G+L+QQ R + L+  R+G+  + +
Sbjct: 235 DVQAPKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDLTQQRRMSILRQFREGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +          +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGATGTSVTFVTNWEMDYLRDV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  ++    P+ E      A    Q  + L   +     ++ VD LL +HD + + 
Sbjct: 355 EHLTKKRLLPMKPPTEEEAFAGRAAMAEQSIEELVQKTDVAKFEEQVDHLLEQHDAKTLV 414

Query: 418 AGFLR 422
           A  L 
Sbjct: 415 AALLN 419


>gi|313634128|gb|EFS00790.1| ATP-dependent RNA helicase DeaD [Listeria seeligeri FSL N1-067]
          Length = 526

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +    
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKID--- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                +++  AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 68  ---QKSNSVQALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAVTEENLSDYKTYANQLLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
 gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
           F6854]
 gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
 gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
          Length = 522

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 138/440 (31%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|188585530|ref|YP_001917075.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350217|gb|ACB84487.1| DEAD/DEAH box helicase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 474

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 222/427 (51%), Gaps = 11/427 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+SE G+   T +Q   +   +  +D++  AQTG+GKT AFG+  
Sbjct: 1   MTTFNDLGLNDGVIKAISEMGFEETTPIQRQAIPQVMNGQDIIGQAQTGTGKTAAFGIPY 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N++         L + PTRELA+QV  E+  L    G+      GG S+  + 
Sbjct: 61  IERIQDPNNK-----EIKGLVVTPTRELAIQVAEEINRLGQYNGITALPIYGGQSIGHQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    I+VGTPGRL DH+  K + ++++  V LDEADEML++GF +DI+ IL  +P 
Sbjct: 116 KALKKRPQIIVGTPGRLIDHLNRKTIKLNNVNMVTLDEADEMLNMGFIEDIKTILQKTPS 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ LMFSAT+   I +LA+ +  D   +   ++      I+ + V V   D+ +    +
Sbjct: 176 HKQTLMFSATMPGPIKSLAEQFMNDPEIIRTKTKEITVPSIEQQYVEVKEGDKFDVFCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF  T+  V    + L +  +    + G++ Q +R + ++  R G   + 
Sbjct: 236 VDSQSPEKAIVFGRTKRRVDELYQALKKRGYFAEGIHGDMPQTKRDHVIKNFRTGATELL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+  +  + + ++  + ++ +HR GRTGRAG+ G +V ++    +     
Sbjct: 296 VATDVASRGLDVTGISHIYNFDIPQDADSYVHRIGRTGRAGQSGAAVTLVTPREKGHLNL 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           + +     +   P PSV+   E   Q+I  + L  ++   +     K+ + LL ++D  +
Sbjct: 356 IEQSIKRQIPRRPKPSVDEALEGK-QKIAVEKLLSEAKDKNARQYHKLAEELLEENDSIE 414

Query: 416 IAAGFLR 422
           + AG L+
Sbjct: 415 LVAGALK 421


>gi|94267131|ref|ZP_01290765.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452155|gb|EAT02824.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 230/473 (48%), Gaps = 14/473 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L       +    P  L +APTRELA+QV  E++           +   GG ++ ++ R 
Sbjct: 69  LD------TSRKYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +R
Sbjct: 123 LQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL 
Sbjct: 183 QVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILE 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +A
Sbjct: 243 AEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +     R    + 
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPEKI 416
           +     +     PS   + +R   +  +  +      G    +E        A+ D +++
Sbjct: 363 KATRQQIARLQLPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAEIDSQQL 422

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AAG    + +A    PEE  P      + R R          G          
Sbjct: 423 AAGLAYLLQQARPLLPEEGGPPPAEEQQQRPRPQGPRKPAPTGRLRGQYPGRR 475


>gi|94266993|ref|ZP_01290640.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452307|gb|EAT02944.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 509

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 141/473 (29%), Positives = 230/473 (48%), Gaps = 14/473 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + +A++E GY   T +Q A + P L  +D+L  AQTG+GKT AF L L S 
Sbjct: 9   FSQLPLAPAVSQAVAEIGYETPTPIQAAAIGPLLAGRDLLGQAQTGTGKTAAFALPLLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L       +    P  L +APTRELA+QV  E++           +   GG ++ ++ R 
Sbjct: 69  LD------TSRKYPQLLVLAPTRELALQVADEIQAYSRHLPGFQVLPLYGGQNMAQQLRA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G   VVGTPGR+ DH+R   L +  L AVV+DEADEML +GF D++E IL  +P +R
Sbjct: 123 LQRGVQAVVGTPGRIQDHLRRGTLKLDRLTAVVIDEADEMLKMGFVDEVEKILAQTPPQR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++ +FSAT++  I  +A+ + KD   + + +       I     LV    + +A+  IL 
Sbjct: 183 QVALFSATMTQEIMRIARRHLKDPEEIRLKTRTTTVETISQHYWLVQGLQKLDALTRILE 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+ +     + LA   F   AL+G+++Q  R   ++ ++DG   + +A
Sbjct: 243 AEAVEAMLIFVRTKVATVELAEKLAARGFASAALNGDMTQGLREKTVEQLKDGTLDIVVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR+G ++  +     R    + 
Sbjct: 303 TDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGRQGQAIIFVAPREMRMLHAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG----DEKKMVDVLLAKHDPEKI 416
           +     +     PS   + +R   +  +  +      G    +E        A+ D +++
Sbjct: 363 KATRQQIARLQLPSRREVNQRRIDQFKEKIIAASRQPGLEFFEELIAQATAEAEIDSQQL 422

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           AAG    + +A    PEE  P      + R R          G          
Sbjct: 423 AAGLAYLLQQARPLLPEEGGPPPAEEQQQRPRPQGPRKPAPTGRLRGQYPGRR 475


>gi|313633504|gb|EFS00323.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL N1-067]
 gi|313638189|gb|EFS03441.1| ATP-dependent RNA helicase DbpA [Listeria seeligeri FSL S4-171]
          Length = 470

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 151/536 (28%), Positives = 245/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E 
Sbjct: 6   LSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTREL VQV  E   +     +  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ+D V + +A+E                 +++  + ++L      +
Sbjct: 180 ATMPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQT----ENKEKTLQDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   + +L  +      + G L Q+ER  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELSDLLQVNA---AKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N++
Sbjct: 293 GIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNIT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P++  ++  +                 +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTIIEVKASEE-------------AFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|89097884|ref|ZP_01170771.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89087386|gb|EAR66500.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 485

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 219/456 (48%), Gaps = 13/456 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + + +A+S  G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MTTFSDFNLSKELEKAVSNMGFEEPTPIQAQAIPIGLSGKDMIGQAQTGTGKTTAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               L +APTRELAVQV  EL  +    GV      GG  + R+ 
Sbjct: 61  LEKIDINE-------GIQGLVLAPTRELAVQVAEELNRIGQVKGVRTLPIYGGQDISRQI 113

Query: 119 R--DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           R      G HI+  TPGRL DHI  K + ++ +K  VLDEADEML++GF +DIE IL   
Sbjct: 114 RALKKDRGPHIIAATPGRLIDHIERKTIRLNKIKLAVLDEADEMLNMGFIEDIERILSEV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ L+FSAT+   I +LA+ +  +   V I ++     +I+   + V    + + + 
Sbjct: 174 PEQRQTLLFSATMPRRIQSLAERFMTEPEMVQIKAKELTVKNIEQHYMEVHEKQKFDVLC 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L     + AIVF  T+  V    + L +  +    + G++ Q +R   ++  ++    
Sbjct: 234 SLLDIQSPELAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDVPQNKRDQVIRRFKEQTID 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG++V  +        
Sbjct: 294 IMVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGLAVTFVSPREIDHL 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + + R     +   P P+   +     Q  +   + +  I+ +E             E  
Sbjct: 354 KLIERVTKTKMAKMPIPTFRDVIAGSQQATINKMMKV--IENEEFNEYKRSAENLLEETD 411

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
           +   L      L    +ITPV L +         + 
Sbjct: 412 SVTLLAAALKLLTKEPDITPVKLTAVEPIRSRKPKP 447


>gi|199598808|ref|ZP_03212220.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229551599|ref|ZP_04440324.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|258509533|ref|YP_003172284.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|258540734|ref|YP_003175233.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|199590313|gb|EDY98407.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|229315064|gb|EEN81037.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149460|emb|CAR88433.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|257152410|emb|CAR91382.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|259650800|dbj|BAI42962.1| RNA helicase [Lactobacillus rhamnosus GG]
          Length = 502

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 139/453 (30%), Positives = 227/453 (50%), Gaps = 13/453 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   +       +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  QHIDKAD------RSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +   IVVGTPGR+ DHI    L + HL  +VLDEADEMLD+GF DDIE I++  P +
Sbjct: 115 QLADHPQIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  L   + K+ V V I ++      ++   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPAAIMRLTNKFMKEPVIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG KG+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  ++    P+ E             +++ +  +  +  E  M + LL  + P ++
Sbjct: 355 EDLTKKRMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYE-AMAETLLENYTPLQL 413

Query: 417 AAGFLRIH--RAGLCAPEEITPVSLVSGRDRFR 447
            + +L+          P +ITP   +  R R  
Sbjct: 414 VSAYLKAVSPDDASAVPVKITPERPLPRRGRNN 446


>gi|169837346|ref|ZP_02870534.1| ATP-dependent RNA helicase [candidate division TM7 single-cell
           isolate TM7a]
          Length = 477

 Score =  229 bits (584), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 242/483 (50%), Gaps = 31/483 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M+ FE+  +   +  ALS++G+   + +Q+ ++   L+E+  ++  AQTG+GKT AFG+ 
Sbjct: 1   MQKFEDFGLSIEMLNALSKKGFEEPSEIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+ A+           AL +APTRELA QV  E+  L  +  + V    GG S+  +
Sbjct: 61  ILETIEAD-------KTVRALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L++G  IVVGTPGR+ D +R K L +  L   VLDEADEML++GF +DIE IL+ + 
Sbjct: 114 IKKLKSGVDIVVGTPGRVMDLMRKKILKVDKLDYFVLDEADEMLNMGFLEDIEAILEKTN 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +++ML FSATI  AI  +AK +  +   + +A +    +  +     V   D+  A+  
Sbjct: 174 DEKKMLFFSATIPKAIMAIAKKFMPEHKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L Y      IVFC T++ V   T  L    +    + G+++Q  R  AL + +     +
Sbjct: 234 VLDYEQDFYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKILTI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  VI+  +    E+ +HR GRTGRAG+KG+++  +      +  
Sbjct: 294 LVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREASKLA 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           ++ R     +  E  P+VE I E   + +L   D + +++      ++   L+   D ++
Sbjct: 354 QIKRITKTEIKREHIPNVEEILEAKKEALLAYVDEIIMENDFDAYSELAQRLMDGRDAKQ 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + A  LR        PE    ++ V                          +   +++GS
Sbjct: 414 VLASVLRHVYEDEFLPENYNEITDVK-------------------VKIDDKTRLFIALGS 454

Query: 476 KQK 478
           K  
Sbjct: 455 KDG 457


>gi|332687106|ref|YP_004456880.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
 gi|332371115|dbj|BAK22071.1| cold-shock DEAD-box protein A [Melissococcus plutonius ATCC 35311]
          Length = 502

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 232/483 (48%), Gaps = 17/483 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+   G+   T +Q   +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLSSQLLLAIERSGFEEATPIQAETIPLALKGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N +         L IAPTRELA+Q   EL  L     + +    GG  + R+ R
Sbjct: 61  EKIDTKNQK------LQGLVIAPTRELAIQTQEELYRLGRDKKIKIQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    IVVGTPGRL DH+  + L +  ++ +VLDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKERPQIVVGTPGRLLDHLNRRTLKLEVIETLVLDEADEMLNMGFLEDIEKIISQVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPTAIKNIGIKFMKNPDHVKIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLETRGYKAEGIHGDLSQQKRMSVLRAFKNGDLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
                  +     P+     +      ++D        G EK  K  + LL K+  E + 
Sbjct: 355 EDLTKKRMSTLRPPTETEAFKGQLGAAIEDIEKKMEENGLEKYLKSAENLLEKYSSEDLV 414

Query: 418 AGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           A  L++         P +ITP   +    +  + +       G+  + KG   +    G 
Sbjct: 415 ALLLKVVSKDPSDMVPVKITPERPLPSTKKGFNKN---NQSNGNYRSRKGKDNYR---GK 468

Query: 476 KQK 478
             +
Sbjct: 469 NNR 471


>gi|319760253|ref|YP_004124191.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038967|gb|ADV33517.1| cold-shock DEAD box protein A [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 617

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 150/598 (25%), Positives = 261/598 (43%), Gaps = 64/598 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+     +   L + GY     +QE  +   L+  D+L  A TGSGKT AF L L 
Sbjct: 6   SSFSNLGLNACLISMLKKVGYKKPLPIQEKCIPLLLKGHDILGIAHTGSGKTAAFLLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
            ++           +   L I PTRELA+Q+G+   +++   +G+ VA+  GG + + + 
Sbjct: 66  QSININTA------STQGLIITPTRELAIQIGQVCIDFIKYISGISVAILYGGQNYNIQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+   HI+VGTPGRL DH+     NIS LK +++DEADEML +GF +D++ I++  P 
Sbjct: 120 NDLRKNPHIIVGTPGRLLDHLNRGTANISKLKILIIDEADEMLRMGFIEDVKLIVNKVPV 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIV 236
            R+   FSAT    I  ++  +      V I + +    DI     LV      +  A++
Sbjct: 180 DRQTACFSATFPENIKKISYKFMNTPKEVCICNIDIHPPDIKQNFWLVKRGMITKHEALI 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L       AIVF  T++   R +++L    +   AL+G+++Q  R   +  ++ G   
Sbjct: 240 RFLEIEDYDAAIVFVRTKSETLRISEILENFGYNSAALNGDMNQSIRQKTVSRLKYGTLD 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + I+TDVAARG+D+  + LVI+ ++ +N  + +HR GRTGRAGR G S+  + +      
Sbjct: 300 ILISTDVAARGLDIQRISLVINYDVPNNYNSYIHRIGRTGRAGRIGKSLLFVERQEYNLL 359

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP--- 413
             + R    ++     P+   +      +          +  D+  +   LL +  P   
Sbjct: 360 NSIKRGEKFNISEVQCPTSHDLINSRLMKFSNKVA--QYLHSDDLLIYRSLLTRIKPDKQ 417

Query: 414 ----EKIAAGFLRIHRAG--LCAPEEITPVS----------------------LVSGRDR 445
               E +AA  L+I +    L  P E   V                       +   R +
Sbjct: 418 SVTMENLAAVLLKIAQGNRPLVLPYETAIVKNKVMCVQGQNMSNIKNKYNGGNMSVNRSK 477

Query: 446 FRDDSRAFKVGGGSRDNFKGSS------------WFSLSVGSKQKAEARWLMPMLCRSSG 493
                R +  G    +N                  + +S+G     + + ++  +     
Sbjct: 478 NFGQKRCYGGGVVGGNNKHDKKNVDTINIVNSIGLYRVSIGRNDGVKIKHIIQAILSKIN 537

Query: 494 INRQSIGAIRVQPDLTFVE------VSADGVDLLRRTV--KLDKGIQLKYLGGEKPDF 543
           ++  +IG +++    + +E      ++   ++    +    L+K +Q+KYLG    D 
Sbjct: 538 VDYFNIGDVKLFDSYSIIEIYRTNVINKKIINFALSSCIEILNKKVQIKYLGNISADR 595


>gi|262340963|ref|YP_003283818.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272300|gb|ACY40208.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 551

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 147/529 (27%), Positives = 258/529 (48%), Gaps = 21/529 (3%)

Query: 2   KIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           K F+      + I +AL   G+   T++QE ++   L  E+DV+  AQTG+GKT AFGL 
Sbjct: 3   KTFKEYNFFNKNILKALEAIGFQYPTTIQEKVIPFLLSSERDVIALAQTGTGKTAAFGLP 62

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
           +   +  +       S P A  + PTREL VQ+ R+          +  +   GGVS+  
Sbjct: 63  IIQKVNFD------LSIPQAFILCPTRELCVQITRDFYRFSKFLSTIKIISLYGGVSIDS 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + LQN  HI++GTPGR+ D I+ K L++  +K ++LDEADEML++GF++++++I+   
Sbjct: 117 QIKSLQNKTHIIIGTPGRIIDLIKRKKLHLEKIKYLILDEADEMLNMGFKEELDYIVKML 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT+S  +  +A+ Y  D V +    +N     + +   +V   ++  + +
Sbjct: 177 PKNRQSLLFSATMSKYMNAIARTYLTDPVEIIAGQKNIVSDGVKHIYYMVGHLNKKYSAL 236

Query: 237 NILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +         I+FC T+       + L +  +   AL G+LSQ +R + +   R+   
Sbjct: 237 KRIVDINPGIYGIIFCETKKETKEIAEYLIKDGYNADALYGDLSQTQRESVMNRFRNKNL 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATDVAARG+D+ ++  VI+  L    +  +HRSGRTGRAG  G+SV +I     R 
Sbjct: 297 QFLVATDVAARGLDVHNITHVINYNLPKESDIYIHRSGRTGRAGNSGISVCIIHSKETRN 356

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHD 412
            +   +    S      P+ + I E+     +   +  +  + +       +   L   D
Sbjct: 357 LKEFEKRIGKSFERVMVPNGKEICEKQLLYFIEKVKKVVVDEKLMNQFLPEIQKNLEFFD 416

Query: 413 PEKIAAGFLRIHRAGL----CAPEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGS- 466
            E++   F  I            ++I P+ + +  R  F ++     +   ++   K S 
Sbjct: 417 KEELIKRFSWIEFNRFISSYKNSKDINPIYTPIYTRKTFMNNKFTKNISSRTKKFRKESF 476

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
           S   L+ GSK       L+ ++ +++  +R  IG I +  + +  EV  
Sbjct: 477 SKLFLNRGSKDNLTKLGLINLINQAANNSRIHIGHIEILSNSSLFEVEK 525


>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 8801]
 gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
 gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
 gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
          Length = 485

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 137/475 (28%), Positives = 227/475 (47%), Gaps = 20/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +     L   G+ + T +Q+  +   L   D+L  +QTG+GKT A+ L +   +  +N
Sbjct: 10  LSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLPILEQVDVKN 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   L+    +  + +    GG S+ R+ R L+ G  
Sbjct: 70  PNV------QALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLERGVQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +  K L+   L+  VLDEADEML +GF DD++ IL  +P  R    FS
Sbjct: 124 IVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTACFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  L   + K  V V +       S I+     +     +  A+  IL     +
Sbjct: 184 ATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELEAPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+F  T+ + +  T  L E    V    G LSQ +R   +   R+G+ ++ +ATD+AA
Sbjct: 244 SAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ ++    +R  +++ R+   
Sbjct: 304 RGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERKLRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     PS   +  +  +++   +Q+ L  + +      +V  L A++DP+ IAA  L+
Sbjct: 364 QLEICQIPSRSQVESKRLEKLQRQIQESLAGERMAS-FLPIVRELSAEYDPQAIAAAALQ 422

Query: 423 IHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           +     C          PE   P  ++  +    ++   +     +     GS  
Sbjct: 423 MVYDQDCPNWMKTDWEVPEASVPKPVIKRKPSPNNNGGKYNRRSQAPQRSGGSDR 477


>gi|217976419|ref|YP_002360566.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217501795|gb|ACK49204.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 505

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 239/447 (53%), Positives = 302/447 (67%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++    +  AL+ER Y   T VQ A L P    +D+LVSAQTGSGKTVA+GLA+A  L 
Sbjct: 3   FQSSNPALARALAERNYDQATDVQTAALEPAAAGRDLLVSAQTGSGKTVAYGLAIAEDLF 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A       A  PLAL I PTRELA+QV RELEWLY   G  V  C+GG+   RERRDL  
Sbjct: 63  AGAPALGAAGEPLALIITPTRELALQVQRELEWLYHYAGARVISCVGGMEPRRERRDLAA 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRL DHI    L +S LKAVVLDEADEMLDLGFR+D+EFIL+++P +RR L
Sbjct: 123 GAHIVVGTPGRLRDHIERGALIVSRLKAVVLDEADEMLDLGFREDLEFILETTPPERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I TLAK +QK+A+R+ +A + R H+DI+YRA+ VA ++ ++A+VN+LR   
Sbjct: 183 LFSATLPKGIATLAKRFQKNALRIEVAGKERGHADIEYRAMRVAPNEIEHAVVNVLRMID 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVFC+TR +V      L E  F    LSGELSQ ER++ALQ +RDGRARVC+ATDV
Sbjct: 243 PPGAIVFCNTREAVRHLHAFLVERGFSAALLSGELSQNERNHALQALRDGRARVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLP L LVIHA+L  + E L HRSGRTGRAGRKG+S+ ++P   +RRAERL  EA
Sbjct: 303 AARGIDLPGLALVIHADLPHDAEILQHRSGRTGRAGRKGISIILVPSARKRRAERLLMEA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   W   P+ E IR  D +R+L+DPL  + I  ++ ++   LL +  PE IAA   R+
Sbjct: 363 GLQPSWSGPPTAEEIRRLDHERLLRDPLLDEPIGEEDSEIARALLDERSPEAIAAALARL 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDS 450
            RA L A EE+      +     RD +
Sbjct: 423 LRARLPAAEEVQDPGEGARNRPLRDGA 449


>gi|326201867|ref|ZP_08191737.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987662|gb|EGD48488.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 481

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/519 (25%), Positives = 234/519 (45%), Gaps = 65/519 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+S   + + T VQE ++   + +KD++V +QTGSGKT AF + +   +  + 
Sbjct: 10  LSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVPICELVEWDE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA+QV  ++  +     + V+   G    + + ++L+   H
Sbjct: 70  NK------PQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQKTH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DHI     + S++K +V+DEADEML +GF + IE I+ S  K+R  ++ S
Sbjct: 124 VVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTVLLS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL   Y K+ +RV I  +N     +      V  + +   + +I       +
Sbjct: 184 ATMPIDIETLCNKYMKEPIRVEIEEQNTTTDRVHQERYDVERASKIKLLRDITIVENPDS 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+T+  V      L    +    + G + Q++R   +   + G  R  IATDVAAR
Sbjct: 244 CIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ ++  + E  +HR GRTGR GR G ++  + ++  +    + +     
Sbjct: 304 GIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLNDINQYIGKE 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++ +  P  E +     +                             EKI          
Sbjct: 364 IILKEKPDRETVNNLKQE---------------------------FSEKIVTAPEIKETK 396

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G+   +EI  + + +G+                                  K     ++ 
Sbjct: 397 GVHLNKEIMKLHINAGKKT--------------------------------KMRPVDIVG 424

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            LC   G+  + IG I +    TFVE+  +  +L+ + +
Sbjct: 425 TLCNIKGMTAEDIGIINILDVSTFVEILNNKGELVYKEL 463


>gi|268680741|ref|YP_003305172.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618772|gb|ACZ13137.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 583

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 238/465 (51%), Gaps = 16/465 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ FE+  + Q I +A++E G+   + VQ   +   L+  D++  AQTG+GKT AFGL  
Sbjct: 1   MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S + A  +R         L I PTRELA QV  EL  L    G+      GG S  R+ 
Sbjct: 61  MSMIDANQNRV------QLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ GA ++V TPGR+ D ++   L     K VVLDEADEMLD+GF +DIE I    PK
Sbjct: 115 GLIEKGASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +R+ L+FSAT+   I  LA     +   V+I  ++   ++       ++   +RD+A++ 
Sbjct: 175 ERQTLLFSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + +IVFC T+  V R +  L    +    L G++ Q +R + ++  R  +  +
Sbjct: 235 LLDALEPEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+++ D+  V +  +  +PE+ +HR GRTGRAG+KG ++ ++        +
Sbjct: 295 LVATDVAARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQ 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+ ++    +     P++  ++E    +I  D +    +  +  K++ +L  + D  +IA
Sbjct: 355 RIGKKVGSKIEHRIVPNLRDVKENKLIKIADD-IKNAELNENASKLLAILEEEMDMSQIA 413

Query: 418 AGFLR--IHRAGLCAPEEI----TPVSLVSGRDRFRDDSRAFKVG 456
              L   +       P++I      +  V      R++SR  + G
Sbjct: 414 LKLLSNLLKENTPVGPDKIGLDKKTLESVVKNIEERENSRGGRSG 458


>gi|304408310|ref|ZP_07389958.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304342779|gb|EFM08625.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 482

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 147/531 (27%), Positives = 241/531 (45%), Gaps = 65/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + IG AL    +   T VQ  ++   L+ +D++V +QTGSGKT A+G+ L   +  E 
Sbjct: 11  LSEDIGRALEGLAFNEPTEVQREVIPVVLQGRDIVVKSQTGSGKTAAYGIPLCELVSWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P  L + PTRELAVQV  +L  +     V  A   G    H ++ +L+   H
Sbjct: 71  NK------PQVLILTPTRELAVQVKEDLTNIGRFKRVKAAAIYGKQPFHIQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHI      +S L  +V+DEADEML++GF D +E I+   P +R  ++FS
Sbjct: 125 IVAGTPGRVLDHIEKGTFPLSKLAYLVIDEADEMLNMGFIDQVEAIIKRLPAERVTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +NY +D V V I +       I++  + V+ +D+   + +I       +
Sbjct: 185 ATLPEDVDQLRRNYMRDPVSVEIQATGLTTDAIEHAQIKVSEADKLELLQSITIVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+  V+   + LA   +    + G ++Q+ER   +   R G+ R  IATDVAAR
Sbjct: 245 CIIFCRTQEGVNELFRKLARLEYPCDRIHGGMAQEERLEVMGAFRRGQFRYLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +   + E  +HR+GRTGRAG++G ++  +  + + R   + +     
Sbjct: 305 GIDIDNITHVINYDFPLDKEGYVHRTGRTGRAGKRGQAITFVTPSDEGRLAEVEQYIGFR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+ EA+                     E+K+      K D     +    I   
Sbjct: 365 IRRIEEPTAEAVESAR--------------DAFERKINRQTRLKKDKSAQVSAEAGI--- 407

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                                                     +  + G K+K  A   + 
Sbjct: 408 ---------------------------------------MKLYF-NGGKKKKLRAVDFVG 427

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + R  G+    IG I +Q + TFV++      L+ + +K    KG  LK 
Sbjct: 428 TIARIDGMTADDIGIIAIQDNETFVDILNGKGLLVLQAMKSTTVKGKLLKV 478


>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 509

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 233/445 (52%), Gaps = 18/445 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   + + + + + G+   T +Q   +   L   DVL  AQTG+GKT AFG+  
Sbjct: 1   MTKFQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       S A    AL +APTRELA+QV  EL  +     V      GG  + R+ 
Sbjct: 61  IERID------SKARQVQALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVV TPGRL DH++ K + +  ++ V+LDEADEML++GF +DIE IL   P+
Sbjct: 115 RGLKKNPQIVVATPGRLMDHMKRKTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P I  +A+ + K    + + ++     +I+ + + +    + + +  +
Sbjct: 175 ERQTLLFSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + +I+F  T+  V   T+ L +  +    L G+L+Q +R   ++  ++G   + 
Sbjct: 235 IDIDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++  I      + + 
Sbjct: 295 VATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKA 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV----DVLLAKHDPE 414
           + R  N  +     P++  + E + ++  ++   ++ +Q  + K        LL +++  
Sbjct: 355 IERVTNKKMNRRHVPTIAEVLEGNQKQAAEE--LIERVQAGDFKAYTQLATELLEEYEAV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSL 439
           +I A  LR    GL    + TPV +
Sbjct: 413 EILAAALR----GLTKEPDSTPVEI 433


>gi|256852006|ref|ZP_05557393.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661425|ref|ZP_05862338.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|282931887|ref|ZP_06337366.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297205122|ref|ZP_06922518.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
 gi|256615418|gb|EEU20608.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547880|gb|EEX23857.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           115-3-CHN]
 gi|281303998|gb|EFA96121.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|297149700|gb|EFH29997.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           jensenii JV-V16]
          Length = 484

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 229/484 (47%), Gaps = 13/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +           AL I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKINNKEHFI------QALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGR+ DH++ K + +  +K VVLDEADEMLD+GF  DIE ILD +  +
Sbjct: 115 ALKQTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAQNR 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              L+FSAT+   I  + + + K+   V I S+      ID   V    +++ + +  ++
Sbjct: 175 EHTLLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+LSQ +R + L+  ++G+  + +
Sbjct: 235 DVQAPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ +   +     A + ++D L  D  +    +    LL  +    +
Sbjct: 355 ENLTKKKMSPLRPPTNDQALQGQLAIAHKQIEDLLKADLTK--YTEEASELLDNYSAVDL 412

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
            A FL+ + +       +ITP   +  +   R          G   N +     ++  G 
Sbjct: 413 VAAFLKNLSKDADEIKVKITPEKPLPYKGNGRRRGHRNNFKHGGDRNERRHRKSNVRRGK 472

Query: 476 KQKA 479
               
Sbjct: 473 HDFV 476


>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
 gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
           F6-596]
          Length = 526

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 137/440 (31%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDNVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAITEENLADYKTFANELLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|18309844|ref|NP_561778.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens str. 13]
 gi|18144522|dbj|BAB80568.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
           13]
          Length = 478

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 149/545 (27%), Positives = 254/545 (46%), Gaps = 72/545 (13%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   +++ A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKEKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++              
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAIT------------- 341

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                                           F++  +    + V+  +           
Sbjct: 342 --------------------------------FVNHYEKKYLENVEEYIGYE-------- 361

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              I +  L + EE+      +GR  F++  +    +     ++         ++ G K+
Sbjct: 362 ---IKKVSLPSDEEVK-----AGRKIFKESQKVQLKESKKPKKEVHGDIVKIHVNGGKKK 413

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKY 535
           K  A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K 
Sbjct: 414 KIRAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKI 473

Query: 536 LGGEK 540
               K
Sbjct: 474 QKARK 478


>gi|60417515|emb|CAI59960.1| ATP-dependent RNA helicase (DEAD/DEAH box family) [Listeria
           ivanovii]
          Length = 474

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/537 (28%), Positives = 245/537 (45%), Gaps = 74/537 (13%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A++E GY   T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E
Sbjct: 9   NLSEEIKRAINELGYKEATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL I PTRELA+QV  E   +     +  A   G     +++ +L    
Sbjct: 69  ENK------PQALIIVPTRELAMQVKAECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L F
Sbjct: 123 HIVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K YQ D + + +A+E                 +++  + ++L      
Sbjct: 183 SATMPEEMQDLIKRYQDDPIVIEMAAEKTNPITHIEMQT----ENKEKTLQDVLITENPD 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC+T+  V   + +L  +      + G L Q+ER  A+   + G++R  IATDVA 
Sbjct: 239 SAIIFCNTKNQVDELSDLLQVNT---AKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAG 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +     +
Sbjct: 296 RGIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDMEDMLKI 355

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           ++  +  P++  ++  +                 +K+     + K   EK+    ++++ 
Sbjct: 356 TIEKKRKPTIIEVKASEE-------------AFRKKQQKRPTIKKARGEKLNKNIMKLYF 402

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
            G                                              G K+K  A   +
Sbjct: 403 NG----------------------------------------------GKKKKIRAVDFV 416

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
             + +  GI  + IG I ++  ++FVE+       +   ++    KG QLK     K
Sbjct: 417 GTISKLEGITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRQLKVNEARK 473


>gi|289434134|ref|YP_003464006.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170378|emb|CBH26918.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 526

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 136/440 (30%), Positives = 225/440 (51%), Gaps = 12/440 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKFPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + +++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLENVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +    AP+ +       +   +       +    D K   + LL K+D   IAA  L++ 
Sbjct: 365 MQPLQAPTWDEAFAGQLRVATEKIQEAVTEENLSDYKTYANQLLEKYDATDIAAAMLKM- 423

Query: 425 RAGLCAPEEITPVSLVSGRD 444
              L    + TPV +   R 
Sbjct: 424 ---LAKEPDKTPVHITEERP 440


>gi|257870943|ref|ZP_05650596.1| helicase [Enterococcus gallinarum EG2]
 gi|257805107|gb|EEV33929.1| helicase [Enterococcus gallinarum EG2]
          Length = 502

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 150/491 (30%), Positives = 241/491 (49%), Gaps = 14/491 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   +  ++   G+   T +QEA +   L+ +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALQGRDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N +         L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  EKIDPANHQ------LQGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI ++   + K+   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKSIGVKFMKNPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGISVTFVTPNEMSYLHVI 354

Query: 360 FREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEK-KMVDVLLAKHDPEKIA 417
                  +     P+  EA + +    I Q  + +D    D+  +  D LL ++  + +A
Sbjct: 355 ENLTKKRMSPMRPPTEKEAFKGQLGAAIEQVEVKMDENGLDKYLQAADDLLERYSAQDLA 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           A  L+          P +ITP   +  G+  F  + R             G +    + G
Sbjct: 415 ALLLKTIAKDPSDLVPVKITPERPLPQGKKSFNKNGRRSNNSNNRNRKDNGGNRSGKARG 474

Query: 475 --SKQKAEARW 483
             SK  A    
Sbjct: 475 NYSKDGARKNN 485


>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
 gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
           DSM 15470]
          Length = 510

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 240/478 (50%), Gaps = 21/478 (4%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F+ +   P+ I +A+ + G+   T +Q+  +   +  KD++  AQTG+GKT AFG+ + 
Sbjct: 4   TFKELGLVPE-IMKAIEDMGFEEPTPIQKVSIPAAMEGKDLIGQAQTGTGKTAAFGIPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +    P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R
Sbjct: 63  EKID------TTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIERQFR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+V TPGRL DH++   +++SH++ +VLDE DEM+D+GF DDI  IL   P++
Sbjct: 117 ALRKKPNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAGMPEE 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ + FSAT+   I  LA+++ +D V V I +       ++   + +    + + +  +L
Sbjct: 177 RQTMFFSATMPAPIRELAESFLRDPVLVKIKAATVTIDLVEQEYIELPDMQKFDCLCRLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+      T+ L +  +    L G+LSQQ+R   ++  ++G   + +
Sbjct: 237 DMENPELAIVFVRTKRRADEVTEALKKRGYMAEGLHGDLSQQKRDAVVRQFKEGTIDILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  + E  +HR GRTGRAG+ G+++  +      +   +
Sbjct: 297 ATDVAARGLDISGVTHVYNFDMPQDSETYVHRVGRTGRAGQTGLAMTFVVSREIGQLHDI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIA 417
            R     +  +  P++  + E + +  +++        G  + ++  + LL   D   + 
Sbjct: 357 ERAIRRKIRRKSVPTLSDVIEGNQRIAIENLQEASRGTGLEEYRENAEELLNHVDAVSLV 416

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           A  +++    L    ++TPV +   R +F+      +   G + +F G        G 
Sbjct: 417 AAAIKL----LTKQPDVTPVKITEERPQFKK-----RRSSGGKRSFGGERRGRRLQGH 465


>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
 gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
           acidilactici DSM 20284]
          Length = 511

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 141/455 (30%), Positives = 220/455 (48%), Gaps = 11/455 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ ++PTRELA Q   E+  L       V V  GG  + R+  
Sbjct: 61  QNVDLDNPNI------QAIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   IVVGTPGRL DHI    + + H+K +VLDEAD+MLD+GF  DIE I++ +P +
Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   +  D  +V + S+      +D   +     ++ + +  I+
Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K A+VF  T+  V    K L    +    + G+L+QQ R N L   RDG+  + +
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +          +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
            R     ++    P+ E      A    Q+   L      +K  +  D LL ++D   + 
Sbjct: 355 ERLTKKRLLPLKPPTEEEAFIGRAAMAEQNVQELVKKTDVDKFGEQADRLLEQYDARTLV 414

Query: 418 AGFLRIHRAGLCAP--EEITPVSLVSGRDRFRDDS 450
           A  L        +    +ITP   +  +      S
Sbjct: 415 AALLNDETKADASEIKVKITPERPLPRKKSGNHKS 449


>gi|308175626|ref|YP_003922331.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
 gi|307608490|emb|CBI44861.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           DSM 7]
          Length = 475

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/528 (26%), Positives = 238/528 (45%), Gaps = 67/528 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  I   I  AL    Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +
Sbjct: 1   MSEFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 E ++      P AL + PTRELA Q+  ++  +     +      G  S  +++
Sbjct: 61  CELADWEENK------PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +H+V GTPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK
Sbjct: 115 TELKQKSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+   +  L++ Y KD   + + +E     DI++     A  D+ + + ++
Sbjct: 175 NRVTMLFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V + T  L    +    + G + Q++R + +   + G  R  
Sbjct: 235 LITENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++ LVI+ ++    E+ +HR+GRTGRAG +G ++  +  +  R    
Sbjct: 295 IATDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLND 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS +   ER A                EK      +     E++  
Sbjct: 355 IETYIGFRIKKREAPSEKETAERKA-------------AFAEKLNARPDVKTDKSEQLNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             A   +  + +  G++   IG I +  + ++VE+       +   +K
Sbjct: 416 IRAVDFVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLSIMK 463


>gi|328555607|gb|AEB26099.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           TA208]
 gi|328913984|gb|AEB65580.1| non-specific DNA-binding protein Hbsu [Bacillus amyloliquefaciens
           LL3]
          Length = 479

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 139/528 (26%), Positives = 238/528 (45%), Gaps = 67/528 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  I   I  AL    Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +
Sbjct: 1   MSEFKDFSISLDIARALEGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 E ++      P AL + PTRELA Q+  ++  +     +      G  S  +++
Sbjct: 61  CELADWEENK------PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +H+V GTPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK
Sbjct: 115 TELKQKSHVVCGTPGRVLDHIEKGTLPLDRLAYVVIDEADEMLNMGFIEQVEAIIQHLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+   +  L++ Y KD   + + +E     DI++     A  D+ + + ++
Sbjct: 175 NRVTMLFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRAAEEDKSSLLRDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V + T  L    +    + G + Q++R + +   + G  R  
Sbjct: 235 LITENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++ LVI+ ++    E+ +HR+GRTGRAG +G ++  +  +  R    
Sbjct: 295 IATDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPSESRFLND 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS +   ER A                EK      +     E++  
Sbjct: 355 IETYIGFRIKKREAPSEKETAERKA-------------AFAEKLNARPDVKTDKSEQLNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             A   +  + +  G++   IG I +  + ++VE+       +   +K
Sbjct: 416 IRAVDFVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLSIMK 463


>gi|317051368|ref|YP_004112484.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946452|gb|ADU65928.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 488

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 152/470 (32%), Positives = 229/470 (48%), Gaps = 11/470 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           +  FE++       +AL E+G+   TS+Q+A +   L +  DV+  AQTG+GKT AFGL 
Sbjct: 7   VDSFESLGLSAQTLQALREKGFEKPTSIQKACIPLVLHQHVDVVGQAQTGTGKTAAFGLP 66

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  T+  E  +        AL + PTRELA+QV  E+  L     + +A   GG S+  +
Sbjct: 67  IIETVKPERRQI------QALILTPTRELALQVADEITSLCGSMKLDIATLYGGQSIGLQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G HI VGTPGR+ D I    L++SHL+ VVLDEADEML++GF +DIE IL  +P
Sbjct: 121 IQKLRRGVHIAVGTPGRIQDLIDRGNLDLSHLEYVVLDEADEMLNMGFIEDIENILQHTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++RML+FSAT+   I  LAK Y      V      +  S  D     V  +D+  A+  
Sbjct: 181 AEKRMLLFSATMPRPILNLAKRYMSTYEHVVAEQTQKTTSLTDQIYYEVREADKFEALCR 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        +VFC T+      T+ L    +   AL G++SQ +R   L   R  R  +
Sbjct: 241 VIDITPDFYGVVFCRTKVDADEITRRLQHRKYVTEALHGDVSQNQREKILDAFRRKRLNI 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ +L  VI+  L  +PE+ +HR GRTGRAG++G ++  I     R+  
Sbjct: 301 LVATDVAARGIDVQNLTHVINFSLPQSPESYVHRVGRTGRAGKEGTAITFISPAEFRKLA 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEK 415
            + +    ++  +  P V  + +   + I      L      ++       +L KH  + 
Sbjct: 361 FIQKITQTTIRRQELPDVNTVIKLKKESIAGALENLIESGEYQQHGDFAQDILQKHSAQN 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           I A  ++        P     +  V            F  G  S    K 
Sbjct: 421 IVAALIQHFYRDELDPASYREIQRVVFEKDKLKPKAPFVKGRKSSGPKKP 470


>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
 gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
 gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
          Length = 502

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 222/450 (49%), Gaps = 11/450 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   +       +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  QNIDKAD------RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVVGTPGR+ DHI    L + +LK +VLDEADEMLD+GF DDIE I++  P  
Sbjct: 115 QLSEHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSATI  +I  L   +  + V V I ++      ++   V     ++ + +  + 
Sbjct: 175 RQTLLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG KG+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  ++    P+ E          L+        +     + M + LL  + P ++ 
Sbjct: 355 EDLTKKRMLPMKPPTAEEALMGQISSGLETIKAQVEANDTEKYEAMAESLLENYTPLQLV 414

Query: 418 AGFLRIH--RAGLCAPEEITPVSLVSGRDR 445
           + +L+          P +ITP   +  R R
Sbjct: 415 SAYLKAVSPDDASAVPVKITPERPLPHRGR 444


>gi|294056537|ref|YP_003550195.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615870|gb|ADE56025.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 524

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 145/469 (30%), Positives = 234/469 (49%), Gaps = 16/469 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + E++   G+   + +Q   +   L   D++  +QTGSGKT AF L   
Sbjct: 4   TTFADLGLRPELLESIQRLGFEQPSPIQARTIPVALDGSDIVGLSQTGSGKTAAFALPAL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L   N       A   L + PTRELAVQV  E+  L      + A+   GG  + R+ 
Sbjct: 64  HGLDLSN------KATQVLVLCPTRELAVQVCEEIHRLSTAMPKLQALPVYGGTPIDRQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+VVGTPGR+ DH++ K L    ++  +LDEAD MLD+GFR+D+E ILD+ P+
Sbjct: 118 RALKKGVHVVVGTPGRVMDHMKRKTLKTDSIRLCILDEADRMLDMGFREDMEIILDAIPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT++  +  L K +  DA ++ I  +      I+     V    +   +  +
Sbjct: 178 ERQTLFFSATMNRGVQGLIKAFSHDAKQIEIEQKTLTVESIEQVYYEVRNRSKVEVMCRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  IVFC+T+  V    + L    +    + G++SQ  R   ++  RD    + 
Sbjct: 238 LDMEPTQRGIVFCNTKQMVEDVCEALNARGYTADRIHGDISQGIREKVIRRFRDNAIEIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ELV + +L  +PE+ +HR GRTGRAGR G S+  +     RR E 
Sbjct: 298 VATDVAARGLDIDDIELVFNYDLPYDPEDYVHRIGRTGRAGRSGKSITFVYGRDIRRLEA 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + R    S+     PS E +    A +I   L+D L     +  + ++  +L A H P  
Sbjct: 358 IERYIRQSIRRTRIPSQEEVEGYRADKIFNQLRDKLEAAEFKNYDHQVDRLLDAGHTPTD 417

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           IA+  + +    L   +E +  ++    + +++ +R  +         K
Sbjct: 418 IASALIDM----LHTEDERSSETIAEDNEPYQESARGPRAKHRKGKYPK 462


>gi|238854499|ref|ZP_04644837.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|260664817|ref|ZP_05865668.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934107|ref|ZP_06339386.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
 gi|313472627|ref|ZP_07813116.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|238832852|gb|EEQ25151.1| cold-shock DEAD box protein A [Lactobacillus jensenii 269-3]
 gi|239529420|gb|EEQ68421.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           jensenii 1153]
 gi|260561300|gb|EEX27273.1| superfamily II DNA and RNA helicase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301854|gb|EFA94119.1| DEAD-box ATP-dependent RNA helicase YdbR [Lactobacillus jensenii
           208-1]
          Length = 484

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 229/484 (47%), Gaps = 13/484 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDALLKAIKRSGFEEATPIQEKTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +           AL I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKIDNKEHFI------QALVIEPTRELAIQTQEELYRLGRDEKAKVQVVYGGADISRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGR+ DH++ K + +  +K VVLDEADEMLD+GF  DIE ILD +  +
Sbjct: 115 ALKQTPAILVGTPGRILDHLKRKTVKLDKIKTVVLDEADEMLDMGFIQDIESILDFAKNR 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              L+FSAT+   I  + + + K+   V I S+      ID   V    +++ + +  ++
Sbjct: 175 EHTLLFSATMPKPILRIGEKFMKEPEIVQIKSKELTADLIDQYFVRAKEAEKFDIMCRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+LSQ +R + L+  ++G+  + +
Sbjct: 235 DVQAPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLSQAKRMSVLKRFKNGKLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKNGISVTFVTPNEIGYMRTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +     P+ +   +     A + ++D L  D  +    +    LL  +    +
Sbjct: 355 ENLTKKKMSPLRPPTDDQALQGQLAIAHKQIEDLLKADLTK--YTEEASELLDNYSAVDL 412

Query: 417 AAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
            A FL+ + +       +ITP   +  +   R          G   N +     ++  G 
Sbjct: 413 VAAFLKNLSKDADEIKVKITPEKPLPYKGHGRRRGHRNNFKHGGDRNERRHRKSNVRRGK 472

Query: 476 KQKA 479
               
Sbjct: 473 HDFV 476


>gi|218281439|ref|ZP_03487888.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
 gi|218217417|gb|EEC90955.1| hypothetical protein EUBIFOR_00453 [Eubacterium biforme DSM 3989]
          Length = 475

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 141/534 (26%), Positives = 254/534 (47%), Gaps = 72/534 (13%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q I +AL   GY     VQE ++   L + D +V ++TGSGKT +F + +  
Sbjct: 2   TFEQMNLDQNIIQALHTLGYEKPLPVQEQVIPNILSQTDCIVKSRTGSGKTASFAIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +        +P AL + PTRELA+Q+ ++ + +     +      G      ++ D
Sbjct: 62  NLEIDE------RSPQALVLTPTRELALQIQQDFDRIGTFKKIKTLPIFGKQPFKFQKED 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+V+GTPGR+ DH++ + L+ S +K VVLDEADEML++ F D+++ IL   PKK 
Sbjct: 116 LKQRCHVVIGTPGRVLDHLQQQTLDPSKIKYVVLDEADEMLNMNFLDEVQAILKYMPKKH 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              +FSAT    I  ++K Y     +V++ S N+ +   +  A  V    ++  ++++L 
Sbjct: 176 VTCLFSATYPAVIQRMSKKYLYKPAKVDLTSTNKPNILEE--AYHVNEEHKELFLLHLLA 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++FC T+A V      L ++   V  + G + Q+ER + ++  + G+ R+ + 
Sbjct: 234 LKKPESCMIFCKTQARVDAVYACLEKNQVSVDKIHGGMMQEERLSHMRRFKKGKVRILVC 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RGID+  +E++I+ ++ S  E   HR GR+GR   +G+++ ++ +    R E+L 
Sbjct: 294 TDVASRGIDVFKVEMIINYDMPSPVETYTHRIGRSGRVDEQGLAISLVNEYDGVRKEKLE 353

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                ++ ++           + +  L D   LDS++   + +VD               
Sbjct: 354 EYLGYNLPFKD----------EGEVYLSDLDVLDSLKESNRVVVD--------------- 388

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                                 S+D  KG +   L+ G  +K  
Sbjct: 389 -------------------------------------KSKDLRKGITKIYLNGGKNKKIR 411

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
              ++  +C   G+    IG I+VQ   ++V++  D   L+ + +K  KG  L+
Sbjct: 412 PGDIVGAICEIDGVTVDDIGVIQVQDHQSYVDILNDKGKLVLKNLKTIKGKTLR 465


>gi|312898631|ref|ZP_07758021.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310620550|gb|EFQ04120.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 522

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 135/482 (28%), Positives = 235/482 (48%), Gaps = 15/482 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+N+    VI  AL++ G+   T +QE  +   L   D++  AQTG+GKT A+G+ +
Sbjct: 6   LEKFKNLQISDVIINALNDMGFEEPTPIQEGSIPVALEGHDMIGQAQTGTGKTAAYGIPV 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +LA            ++ ++PTRELA+QV  E+  L   T V      GG  + R+ 
Sbjct: 66  LEKILAAGAP----KELQSVILSPTRELAIQVAEEINHLAQYTPVQALPIYGGQDMERQL 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH++   + +S +  +VLDEADEML++GF DDI  I+ ++P+
Sbjct: 122 RRLRKSPQIIVATPGRLIDHMKRGTVKLSSISTIVLDEADEMLNMGFIDDINLIMSATPE 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  LA+ + KD   + + ++      ++   + VA   + + +  +
Sbjct: 182 TRQTLLFSATMPAPIQKLAETFLKDPQIIRMKAKEVTIDLVEQSYIEVADRQKFDVLCRL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+  V   ++ L +  +    + G+L+Q +R + ++  R+    + 
Sbjct: 242 LDLQEPDLAIIFVRTKRRVDELSEGLKKRGYSAEGIHGDLTQAKRDSVIRQFREKTIDIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+ G +   +          
Sbjct: 302 VATDVAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREIDHLRT 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           + +     +    APS     E   Q  L++ L   + +GD    +   + LL  +D   
Sbjct: 362 IEKLIKHRISRRKAPSFSEALEGAQQTALRN-LSTAAEEGDVTAYRASAEELLETYDSVT 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-SWFSLSVG 474
           + A  +++    L    + TPV +          S   + G       + S        G
Sbjct: 421 LVAAAVKL----LIKEPDTTPVKITEEAPLRIRRSHGNRNGNSRNSKRRPSGDSHRRLDG 476

Query: 475 SK 476
            +
Sbjct: 477 RR 478


>gi|147918815|ref|YP_687459.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
 gi|110622855|emb|CAJ38133.1| ATP-dependent RNA helicase [uncultured methanogenic archaeon RC-I]
          Length = 451

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 139/463 (30%), Positives = 232/463 (50%), Gaps = 18/463 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FEN+   + + +AL+  G+   T +Q++ +   L+ KDV+  A TG+GKT AFG+ +
Sbjct: 1   MSSFENLKLSEPVMKALASMGFEESTHIQDSTIPLALKGKDVIGQAPTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                          +  A+ I PTRELA+QV  EL  +    G+      GG     + 
Sbjct: 61  IEICDNSP-------SIQAIVITPTRELAIQVSEELNKIGQFKGIRALPIYGGQEYKWQM 113

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L+    I+V TPGRL DH  + K +  + +K +VLDEADEMLD+GF DDI  +++  P
Sbjct: 114 KGLKEKPQIIVATPGRLMDHLTKQKSIKGNDVKMLVLDEADEMLDMGFIDDIYAVMEKLP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+SP I  +A    K    V   S+  +   I    V V  S +  A+  
Sbjct: 174 AERQTLLFSATMSPEIKKIAVELMKKPHIVGQESKKVKSPAISQHYVEVHESGKFEALCR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       AIVF  T+  V    + L    +  V L G++ QQ R++ ++  ++G+ +V
Sbjct: 234 ILDTQCPDLAIVFVRTKVRVDELQEGLTRRGYAAVGLHGDMDQQRRNSIMKQFKNGKTQV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D+  V + ++  +PE+ +HR GRTGRAG+ G+S+  +     +  +
Sbjct: 294 LVATDVAARGLDISDVSHVFNFDIPRDPESYVHRIGRTGRAGKSGISITFVTFREIKLLK 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPE 414
            + + +   +     P++E   E   ++++ D L   +   D    + + + LL  +D  
Sbjct: 354 LIEQVSARRMERMEVPTLEEAIEEQQRKVI-DSLREAAYGEDALRYRHLAEKLLNDNDSV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            + +  L +    L    + TPV L   +   +      +   
Sbjct: 413 TLVSAALTM----LIKEPDKTPVVLTEPKQGGKKKGGFRRPRK 451


>gi|169829741|ref|YP_001699899.1| ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus C3-41]
 gi|168994229|gb|ACA41769.1| Probable ATP-dependent RNA helicase exp9 [Lysinibacillus sphaericus
           C3-41]
          Length = 508

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 233/456 (51%), Gaps = 14/456 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ 
Sbjct: 61  IEKIDPKNPNI------QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P 
Sbjct: 115 RALKNRPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINAILENVPS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +
Sbjct: 175 ERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + 
Sbjct: 235 LNVHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +     P+ +       +  L   + L  ++  GD + +   +L  HD   +
Sbjct: 355 VEETTKKRMTPLRPPTSDEALVGQQRLALDTLEGLIANNNLGDYRTLASEILENHDAIDV 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
            A  LR     L    + TPV++   R       R+
Sbjct: 415 VAAALR----SLTKEPDDTPVTISEERPLPMRRERS 446


>gi|37522077|ref|NP_925454.1| hypothetical protein gll2508 [Gloeobacter violaceus PCC 7421]
 gi|35213076|dbj|BAC90449.1| gll2508 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 142/427 (33%), Positives = 229/427 (53%), Gaps = 12/427 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL E G+   T +Q   +   L  +D+L  AQTG+GKT AFGL L      ++
Sbjct: 10  LSESVVKALDELGFEQPTPIQLKSIPFLLDGRDLLAQAQTGTGKTAAFGLPLVDRSDPQD 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL +APTRELAVQV   +      +GV V    GG  + R+ R L+ GA 
Sbjct: 70  ARV------QALVLAPTRELAVQVCEAIHTYSKHSGVRVLPIYGGQPIDRQMRRLRAGAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +R   L++S L+ +VLDEAD+MLD+GF ++++ ILD++P +R+++ FS
Sbjct: 124 IVVGTPGRVLDLMRRGSLDLSALRTLVLDEADQMLDMGFIEEVQTILDAAPPERQLVFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  LA  + +  + + + +E R    I  R   V   +R  A+  +L      +
Sbjct: 184 ATLPASIRKLAARHLRTPMTLTMPAEERDTPAIAQRVYFVNFKNRAQALTRVLAAEDPAS 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+ +     + L +   +  AL G+L+Q  R   L   R  +  V +ATDVAAR
Sbjct: 244 ALIFTRTKQAADELAEQLQDDGHRAEALHGDLNQSAREAVLGRFRRQQLNVVVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL  VI+ ++  + E+ +HR GRTGRAGR G+++       + R   + R    +
Sbjct: 304 GLDIADLSHVINYDMPQDGESYIHRIGRTGRAGRTGVAISFALPTDRYRLRLIERATGST 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDPEKIAAGF 420
           +V    PS   I+ R  +R+++           +      +++V  L  + D   IAA F
Sbjct: 364 LVPAKIPSAGEIQVRRTERLVEQLRRQLQADESDPSLVLYREVVGQLREEFDLGDIAATF 423

Query: 421 LRIHRAG 427
           L++ +  
Sbjct: 424 LKLAQQR 430


>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 526

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 229/474 (48%), Gaps = 11/474 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+   + E L E G+   T +Q+  +   L+ +D++  AQTG+GKT AFGL + 
Sbjct: 1   MKFSDLNLKTELIETLDELGFEEPTPIQQQAIPFVLQGRDLVGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
             L  ++       A  AL IAPTRELA+QV  EL  L         AV  G     +  
Sbjct: 61  QGLDTDH------RALQALIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQID 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R  +    ++VGTPGRL D +R + ++ S+LK +++DEADEML++GF +DI+ I++ +P 
Sbjct: 115 RIQKLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT+  ++  LA+ +      V I +++     ID   V    S++ + +  +
Sbjct: 175 SRQTLMFSATMPKSVQNLAQQFLTQPAEVKIEAKHLTADLIDQYFVKCRDSEKFDILTRM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F  T+  V    + L+   +    + G+++QQ+R+  +   + GR  + 
Sbjct: 235 LDIESPDKAIIFARTKKRVDEIGRGLSLRGYDAELIHGDVTQQKRTQVMNEFKQGRLELL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  V + ++  +PE+ +HR GRTGRAG +G SV  + ++       
Sbjct: 295 VATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEGQSVTFVMESELPYLRT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +     P+ +       Q+++   +    D      +    +LL  ++   +
Sbjct: 355 IESLTKNQMTPMRPPTDQEAEASQVQQLIDRLNATIADGTVDPYRATAKLLLNHYESNAL 414

Query: 417 AAGFLRIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            AG L          E +I+P   +    +        +         K +  F
Sbjct: 415 VAGLLNEVINNNTEIEVQISPQKPLPRAHKEEKGRSRGRRQFDGCQRKKNTDKF 468


>gi|169346889|ref|ZP_02865837.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
 gi|169296948|gb|EDS79072.1| ATP-dependent RNA helicase DeaD [Clostridium perfringens C str.
           JGS1495]
          Length = 478

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 148/545 (27%), Positives = 251/545 (46%), Gaps = 72/545 (13%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V      G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCVAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  A+   L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKGKALWKCL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  ++AIVFC+TR  V    K+L +       L G++ Q++R   ++  RD   +V +
Sbjct: 235 YAYHPESAIVFCNTRNKVKSVYKMLKDEGITCNELHGDMEQKKRIEVMENFRDKHFKVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++              
Sbjct: 295 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAIT------------- 341

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                                           F++  +    + V+  +           
Sbjct: 342 --------------------------------FVNHYEKKYLENVEEYIGYE-------- 361

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              I +  L + EE+      +GR  F++  +    +     ++         ++ G K+
Sbjct: 362 ---IKKVSLPSDEEVK-----AGRKIFKESQKVQLKESKKPKKEVHSDIVKIHVNGGKKK 413

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKY 535
           K  A  ++       G+    IG I VQ   ++V++     D + ++ K    KG ++K 
Sbjct: 414 KIRAFDIVGCFSNLPGLTGGDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKI 473

Query: 536 LGGEK 540
               K
Sbjct: 474 QKARK 478


>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
 gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
           UPII 345-E]
          Length = 491

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 235/467 (50%), Gaps = 14/467 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+ +   + I +A+++ G+   + +Q+  +   ++ KD++  AQTG+GKT AFG+ + 
Sbjct: 3   ETFKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +            P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R
Sbjct: 63  QRIDTSKP------GPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+V TPGRL DH++ K +++S+++  VLDE DEM+D+GF DDI  I+ ++PK+
Sbjct: 117 ALKKKPNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKE 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA ++  +   V I +       I+   + +    + +A+  +L
Sbjct: 177 RQTLFFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+      T+ L +  +    L G+LSQQ+R + ++  ++G     +
Sbjct: 237 DMQSPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE  +HR GRTGRAG+ G++   +      +   +
Sbjct: 297 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQLREI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
            R     +     PS+  + + + +  ++         G E   +  + LL   D   + 
Sbjct: 357 ERVIRRRIKRRAVPSLSEVIKGNERTAIETLRNTAQSGGLEHYIETAEELLNNIDSVSLV 416

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +  +++    L    +ITPV +   +  FR +    K     R N K
Sbjct: 417 SAAIKL----LTKQPDITPVKITEEKPMFRRNRGKGKGNFRHRRNGK 459


>gi|307941464|ref|ZP_07656819.1| dead/deah box helicase domain-containing protein [Roseibium sp.
           TrichSKD4]
 gi|307775072|gb|EFO34278.1| dead/deah box helicase domain-containing protein [Roseibium sp.
           TrichSKD4]
          Length = 409

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 119/313 (38%), Positives = 177/313 (56%), Gaps = 20/313 (6%)

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ELSQ++RS AL  M+ G ARVC+ATDVAARGIDLP+L+LVIHA+L +    LLHRSGRTG
Sbjct: 6   ELSQEQRSAALTAMKTGAARVCVATDVAARGIDLPNLDLVIHADLPTGKAALLHRSGRTG 65

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           RAGRKG SV ++P   +R AE   + A V V W+ AP+ + IR +D +R+ + P+     
Sbjct: 66  RAGRKGTSVLMVPFPRRRAAEHTLKFAGVKVTWKGAPTADDIRAKDKERLFEAPVLNTEF 125

Query: 397 QGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS--GRDRFRDDSRAFK 454
           + ++  +   L+ KHDPEK+AA F++++++ L APEE++  S  +  GRD      R  +
Sbjct: 126 EPEDLAIARELMEKHDPEKLAAAFVKLYQSRLPAPEEVSEASEENIHGRDSGSRGGRVAE 185

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           + G     F    WF LS+G K +A+ RWL+PM+CR+  + ++ +GAI++    T  E+S
Sbjct: 186 IRG----KFDEGVWFRLSLGHKHRADPRWLLPMICRAGHVTKKEVGAIKIFQTETRFEIS 241

Query: 515 ADGVDLLRRTVKLD----KGIQLKYLGGEK----PDFRGYKSSGFKSKNSQDGATK---- 562
            +  +    T+K D      + ++ L   K    P   G      + K  + G       
Sbjct: 242 GEHAERYAATLKRDGTGEDNVTIELLDARKGKVPPPPAGEGGDRGRGKPRRKGGAPDYEN 301

Query: 563 --RFKRFKGASKN 573
             R  R  G    
Sbjct: 302 MGREDRMDGDRPR 314


>gi|69248308|ref|ZP_00604710.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878842|ref|ZP_05658495.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881478|ref|ZP_05661131.1| helicase [Enterococcus faecium 1,231,502]
 gi|257890700|ref|ZP_05670353.1| helicase [Enterococcus faecium 1,231,410]
 gi|258615088|ref|ZP_05712858.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|293560261|ref|ZP_06676758.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|294621795|ref|ZP_06700954.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|314938932|ref|ZP_07846197.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314943517|ref|ZP_07850284.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948188|ref|ZP_07851582.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314951548|ref|ZP_07854594.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314991589|ref|ZP_07857065.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314994922|ref|ZP_07860049.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194452|gb|EAN08953.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257813070|gb|EEV41828.1| helicase [Enterococcus faecium 1,230,933]
 gi|257817136|gb|EEV44464.1| helicase [Enterococcus faecium 1,231,502]
 gi|257827060|gb|EEV53686.1| helicase [Enterococcus faecium 1,231,410]
 gi|291598627|gb|EFF29685.1| ATP-dependent RNA helicase [Enterococcus faecium U0317]
 gi|291605711|gb|EFF35148.1| cold-shock deAd box protein a [Enterococcus faecium E1162]
 gi|313590904|gb|EFR69749.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593873|gb|EFR72718.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313596242|gb|EFR75087.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313597889|gb|EFR76734.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313641641|gb|EFS06221.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645321|gb|EFS09901.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 503

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 502

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 138/450 (30%), Positives = 222/450 (49%), Gaps = 11/450 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+++ G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLDYDLLKAIAQSGFEEATPIQAETIPLVLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   +       +  AL I+PTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  QNIDKAD------RSIQALVISPTRELAIQTQEELYRLGQDKKIKVQAVYGGADIRRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVVGTPGR+ DHI    L + +LK +VLDEADEMLD+GF DDIE I++  P  
Sbjct: 115 QLSEHPQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEMLDMGFIDDIEKIVEQMPTA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSATI  +I  L   +  + V V I ++      ++   V     ++ + +  + 
Sbjct: 175 RQTLLFSATIPASIMRLTNKFMHEPVTVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F  T+  V   T+ L    ++   + G+L+QQ+R + L+  + G+    +
Sbjct: 235 DVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG KG+SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  ++    P+ E          L+        +     + M + LL  + P ++ 
Sbjct: 355 EDLTKKRMLPMKPPTAEEALMGQISSGLETIKAQVEANDTEKYEAMAESLLENYTPLQLV 414

Query: 418 AGFLRIH--RAGLCAPEEITPVSLVSGRDR 445
           + +L+          P +ITP   +  R R
Sbjct: 415 SAYLKAVSPDDASAVPVKITPERPLPHRGR 444


>gi|319651117|ref|ZP_08005250.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397171|gb|EFV77876.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 129/443 (29%), Positives = 222/443 (50%), Gaps = 13/443 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   ++ KD++  AQTG+GKT AFG+ L   +               
Sbjct: 1   MGFEEPTPIQAQAIPIGMKGKDMIGQAQTGTGKTTAFGVPLLEQIDLNE-------GIQG 53

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELAVQV  EL  +    GV      GG  + R+ R L+   HI+  TPGRL D
Sbjct: 54  LVLAPTRELAVQVAEELNRIGQVKGVRTLPVYGGQDITRQIRALKKHPHIIAATPGRLID 113

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K + +S++K VVLDEADEML++GF +DIE IL     +R+ L+FSAT+   I +LA
Sbjct: 114 HIERKTIRLSNIKMVVLDEADEMLNMGFIEDIERILSEIKGERQTLLFSATMPKRIQSLA 173

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + ++   V + ++     +I+   + V    + + + N+L     + AIVF  T+  V
Sbjct: 174 EKFMQEPEMVKVKAKEMTVKNIEQYYMEVHEKQKFDVLCNLLDIQSPELAIVFGRTKKRV 233

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L +  +    + G++ Q +R   ++  ++    + +ATDVAARG+D+  +  V 
Sbjct: 234 DEVVEGLIKRGYSAEGIHGDIPQAKRDQVIRRFKEQTIDIMVATDVAARGLDISGVSHVY 293

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG KG+++  +        + +       +  +P PS + 
Sbjct: 294 NFDIPQDPESYVHRIGRTGRAGNKGLAITFVSPREIDHLKIIESVTKSKMAKKPVPSFKD 353

Query: 378 IRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT 435
           +   + Q  +   + +   +   D K++ + LL   D   + A  +++   G     ++T
Sbjct: 354 VVAGNQQATINKLMEVIEKEEHADFKRVAESLLEDTDSVTLLAAAIKLLTKG----PDVT 409

Query: 436 PVSLVSGRDRFRDDSRAFKVGGG 458
           PV L +         +  + G  
Sbjct: 410 PVKLTAVEPICVRKPKGDRGGRR 432


>gi|315037505|ref|YP_004031073.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325955969|ref|YP_004286579.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|312275638|gb|ADQ58278.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1112]
 gi|325332534|gb|ADZ06442.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           30SC]
 gi|327182801|gb|AEA31248.1| ATP-dependent RNA helicase-like protein [Lactobacillus amylovorus
           GRL 1118]
          Length = 497

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 145/469 (30%), Positives = 231/469 (49%), Gaps = 14/469 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QTIDKKE------KAIQAIIIEPTRELAIQTQEELFRLGRDEHTHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++   +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRGTINLDKVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      ID   V    S++ + +  +
Sbjct: 175 RKQTLLFSATMPKPILRIGEKFMNHPKIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+  +A R +  Q   +    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTQKKMSPLRPPTDAQAFRGQLKQAEAEIEDLMNGDLGKYTQEASELLDNYSALDLV 414

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           A FL+ + +       +ITP   +     ++ D R  + G G   N +G
Sbjct: 415 AAFLKNLSKDSTDVKVKITPEKPLP----YKGDGRHHRGGRGKGRNNRG 459


>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
 gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
          Length = 511

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 141/455 (30%), Positives = 220/455 (48%), Gaps = 11/455 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I +A+ + GY   T +Q   +   L  KD++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLEEDILKAVLDNGYDEPTPIQAETIPDVLAGKDIIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N          A+ ++PTRELA Q   E+  L       V V  GG  + R+  
Sbjct: 61  QNVDLDNPNI------QAIIVSPTRELAAQTQAEIFKLGKYKRAKVQVVYGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++   IVVGTPGRL DHI    + + H+K +VLDEAD+MLD+GF  DIE I++ +P +
Sbjct: 115 ALKSHPQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDMLDMGFLPDIEKIIEQTPSE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   +  D  +V + S+      +D   +     ++ + +  I+
Sbjct: 175 RQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSKELTADLVDQYYIRSKEFEKFDMLTRII 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K A+VF  T+  V    K L    +    + G+L+QQ R N L   RDG+  + +
Sbjct: 235 DVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDLTQQRRMNILHQFRDGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G SV  +          +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGAHGTSVTFVTNWEMDYLRDV 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
            R     ++    P+ E      A    Q+   L      +K  +  D LL ++D   + 
Sbjct: 355 ERLTKKRLLPLKPPTEEEAFIGRAVMAEQNVQELVKKTDVDKFGEQADRLLEQYDARTLV 414

Query: 418 AGFLRIHRAGLCAP--EEITPVSLVSGRDRFRDDS 450
           A  L        +    +ITP   +  +      S
Sbjct: 415 AALLNDETKADASEIKVKITPERPLPRKKSGNHKS 449


>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
 gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
          Length = 519

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 132/430 (30%), Positives = 228/430 (53%), Gaps = 14/430 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +      A   
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKE------AVQG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ D
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A
Sbjct: 115 HINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  +   + + ++     +I    + V    + + +  +L     + AI+F  T+  V
Sbjct: 175 ERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGTIEVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     V    AP+++ 
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKVDRMDAPTLDE 354

Query: 378 IRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
             E   QR++ + L     +      K++ + +L ++D   + A  L++    +    + 
Sbjct: 355 ALEGQ-QRLIAEKLQSTIENDNLSYYKRIAEEMLEENDSVTVVAAALKM----MTKEPDT 409

Query: 435 TPVSLVSGRD 444
           TP++L S   
Sbjct: 410 TPIALTSEPP 419


>gi|254413664|ref|ZP_05027434.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179771|gb|EDX74765.1| DEAD/DEAH box helicase domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 464

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 147/472 (31%), Positives = 232/472 (49%), Gaps = 18/472 (3%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M + F N+   +     L + G+   T +Q   +   L  +DV+  +QTG+GKT AF L 
Sbjct: 1   MTLSFNNLGLSEECLHQLEKLGFDTPTEIQSQAIPELLAGRDVVAQSQTGTGKTAAFSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +         A    AL +APTRELA QV   +  L +   V +    GG S+ R+
Sbjct: 61  MLEQIDPN------ARGVQALILAPTRELARQVADAIRDLTSNRRVGIVTVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ  A +VVGTPGR+ D +    L +  +K VVLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRLLQRNAQMVVGTPGRVIDLLDRGDLKLDQVKWVVLDEADEMLSMGFIDDVKKILKQAP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIV 236
           K+R+   FSAT+  AI  L   + K  V V +       + I+ R  ++     +  A+ 
Sbjct: 175 KERQTACFSATMPKAIRDLVNQFLKSPVTVTVELPKATPARIEQRVYMIPRGCSKSKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     + A++F  TR S +  T  L      V    G+LSQ +R   L   R  + R
Sbjct: 235 PILALEDPEAALIFVRTRRSAAELTSQLQAAGHSVDEYHGDLSQSQRERLLSRFRQSQVR 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARG+D+  L  VI+ +L    E+ +HR GRTGRAG+ G ++ +I    +R+ 
Sbjct: 295 WVVATDIAARGLDVDHLTHVINYDLPDQVESYIHRIGRTGRAGKTGTAISLIQPFERRKL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHD 412
            ++ R+   ++     P+   I  R  ++ LQD L  +++ G+       +V  L  ++D
Sbjct: 355 HQIERKVRQNLQVSRIPTRSQIEARRLEK-LQDELR-EALTGERMASFLPIVRELSEEYD 412

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           P  IAA  L++         E+  + + +  +R +   R       S  + +
Sbjct: 413 PHAIAAAALQMVYD--HTQPELAAIEVDNKVERPKLVKRRNNKSKESVTHNR 462


>gi|46907469|ref|YP_013858.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093505|ref|ZP_00231267.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|226223849|ref|YP_002757956.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes
           Clip81459]
 gi|254824696|ref|ZP_05229697.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|254852700|ref|ZP_05242048.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|254932440|ref|ZP_05265799.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|255522060|ref|ZP_05389297.1| ATP-dependent RNA helicase (DEAD motif) [Listeria monocytogenes FSL
           J1-175]
 gi|300765280|ref|ZP_07075264.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|46880737|gb|AAT04035.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018123|gb|EAL08894.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 4b
           H7858]
 gi|225876311|emb|CAS05020.1| Putative ATP-dependent RNA helicase (DEAD motif) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606021|gb|EEW18629.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL R2-503]
 gi|293583997|gb|EFF96029.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HPB2262]
 gi|293593935|gb|EFG01696.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J1-194]
 gi|300513963|gb|EFK41026.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N1-017]
 gi|332311691|gb|EGJ24786.1| ATP-dependent RNA helicase dbpA [Listeria monocytogenes str. Scott
           A]
          Length = 470

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 152/536 (28%), Positives = 246/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQIEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L   +     + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKV---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|30018496|ref|NP_830127.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29894036|gb|AAP07328.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 514

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 131/430 (30%), Positives = 228/430 (53%), Gaps = 14/430 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L+ KD++  AQTG+GKT AFGL L   +    +      +   
Sbjct: 1   MGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKE------SVQG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QVG EL  +     V +    GG  ++R+ R L+   HI+VGTPGR+ D
Sbjct: 55  IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K L + +++ VVLDEADEML++GF +DIE IL   P+  + L+FSAT+   I  +A
Sbjct: 115 HINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  +   + + ++     +I    + V    + + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L    +    + G+L+Q +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG+KG+++  +      + + + R     +    AP+++ 
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDE 354

Query: 378 IRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEI 434
             E   QR++ + L     +      K++ + +L ++D   + A  L++    +    + 
Sbjct: 355 ALEGQ-QRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVAAALKM----MTKEPDT 409

Query: 435 TPVSLVSGRD 444
           TP++L S   
Sbjct: 410 TPIALTSEPP 419


>gi|257899462|ref|ZP_05679115.1| helicase [Enterococcus faecium Com15]
 gi|293573030|ref|ZP_06683972.1| cold-shock deAd box protein a [Enterococcus faecium E980]
 gi|257837374|gb|EEV62448.1| helicase [Enterococcus faecium Com15]
 gi|291606932|gb|EFF36312.1| cold-shock deAd box protein a [Enterococcus faecium E980]
          Length = 503

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 219/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPEQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKNGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|116872678|ref|YP_849459.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741556|emb|CAK20680.1| ATP-dependent RNA helicase DbpA family [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 470

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 151/537 (28%), Positives = 245/537 (45%), Gaps = 74/537 (13%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  ++ E
Sbjct: 5   NLSDEIKKAITELGYNEATPVQKAVIPIALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWE 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL I PTRELA+QV  E   +     +  A   G     +++ +L    
Sbjct: 65  ENK------PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKN 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L F
Sbjct: 119 HIVVGTPGRLLDHIEKGTLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKKRQNLFF 178

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L K YQ + + + +ASE                  ++  + ++L      
Sbjct: 179 SATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQT----DTKEKTLKDVLITENPD 234

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+FC+T+  V   +++L         + G L Q++R  A+   + G++R  IATDVA 
Sbjct: 235 SAIIFCNTKNQVDELSEMLDLRT---SKIHGGLRQEDRFQAMDEFKSGKSRFLIATDVAG 291

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +          +    N+
Sbjct: 292 RGIDVENVSLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTQENPLLRDIEEMLNI 351

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           S+  +  P++  +R  +                 +K+     + K   EK+    ++++ 
Sbjct: 352 SIEKKRKPTIIEVRASEE-------------AFHKKQQKRPTIKKARGEKLNKNIMKLYF 398

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
            G                                              G K+K  A   +
Sbjct: 399 NG----------------------------------------------GKKKKIRAVDFV 412

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
             + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 413 GTISKLDGITAEDIGIIAIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|315644143|ref|ZP_07897313.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280518|gb|EFU43807.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 481

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 147/543 (27%), Positives = 244/543 (44%), Gaps = 69/543 (12%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + I  AL   GY   T VQ  ++   L ++D++V +QTGSGKT A+G+ L 
Sbjct: 4   KRFTDYPLSEEIRRALDSLGYTTPTEVQTEVIPVALEKRDLVVKSQTGSGKTAAYGIPLC 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++      P AL + PTRELA+QV  ++  +     +      G    H ++ 
Sbjct: 64  EQVEWNENK------PQALILTPTRELALQVNEDITNIGRFKRIKATPLYGRHPFHMQKA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DHI    L++  +  +V+DEADEML++GF + ++ I+ + P+ 
Sbjct: 118 ELKQRTHIVVGTPGRVLDHIERGSLSLDRISHLVIDEADEMLNMGFIEQVQSIIQALPRN 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT    +  LA  Y     ++ I +     + ID+  V V  +D+   + N+L
Sbjct: 178 RVTMLFSATFPEDVAKLAHKYMNHPEQIEIKASGLTTATIDHAQVQVKEADKLAVLQNLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + IVFC T+  V    + LA+  +    + G + Q+ER   +   R G+ R  I
Sbjct: 238 ITTNPDSCIVFCRTQEHVDTLFRALADLGYPCDRIHGGMEQEERFEVMHAFRRGQFRYLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    E+ +HR+GRTGRAG+ G ++ ++      R   +
Sbjct: 298 ATDVAARGIDISNITHVINYDIPLEKESYVHRTGRTGRAGQTGSAITLVTPRDSGRLADI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++    APS E + E                  + K  +   L K   E++   
Sbjct: 358 EAYIGFAIPKMTAPSEEKVDECRE-------------AFERKLNIRPKLKKDKREQLNQQ 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            ++++  G                                              G K+K 
Sbjct: 405 IMKLNFNG----------------------------------------------GKKKKL 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLG 537
            A   +  + +  GI    IG I +   +T VE+      ++   ++    KG  LK   
Sbjct: 419 RAVDFVGTIAKLDGITADDIGIITIFDFVTDVEILNGKGPMVLEMMQNTTVKGKLLKVRK 478

Query: 538 GEK 540
           G K
Sbjct: 479 GNK 481


>gi|116329398|ref|YP_799118.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330001|ref|YP_799719.1| ATP-dependent RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122142|gb|ABJ80185.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123690|gb|ABJ74961.1| ATP-dependent RNA helicase (superfamily II) [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 230/474 (48%), Gaps = 23/474 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 10  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPAIELLEVE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                 +    AL + PTREL +QV  +   L    G    V   GG  + R+ + L+  
Sbjct: 70  ------SKHLQALILCPTRELVIQVSEQFRKLMKYKGNFEVVPVYGGQEIERQLKALRKN 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   + ++ +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 124 PQIVIATPGRMMDHMRRGSIRLNDIKIVVLDEADEMLDMGFREDMEFILKDTPIDRQTIM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I TL K +QK    +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 184 FSATMTEDILTLMKRFQKHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R+G   + +ATDVA
Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMNGFRNGNIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + +     P+++ + E         ++  +    I     ++  ++   +    IAA   
Sbjct: 364 IKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTALDIAAALF 423

Query: 422 RI-------------HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           ++                     EE        G+ R R+  R+        + 
Sbjct: 424 KMTILRDSVTFDDSVQFESNFKYEERNSFKKKPGKYRDRNFGRSGSGARTKSNP 477


>gi|16803286|ref|NP_464771.1| hypothetical protein lmo1246 [Listeria monocytogenes EGD-e]
 gi|224499083|ref|ZP_03667432.1| hypothetical protein LmonF1_05030 [Listeria monocytogenes Finland
           1988]
 gi|224501811|ref|ZP_03670118.1| hypothetical protein LmonFR_04752 [Listeria monocytogenes FSL
           R2-561]
 gi|284801628|ref|YP_003413493.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284994770|ref|YP_003416538.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
 gi|16410662|emb|CAC99324.1| lmo1246 [Listeria monocytogenes EGD-e]
 gi|284057190|gb|ADB68131.1| hypothetical protein LM5578_1381 [Listeria monocytogenes 08-5578]
 gi|284060237|gb|ADB71176.1| hypothetical protein LM5923_1334 [Listeria monocytogenes 08-5923]
          Length = 470

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 151/536 (28%), Positives = 246/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ + + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++             ++     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------VNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|157691224|ref|YP_001485686.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157679982|gb|ABV61126.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 513

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 133/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + + +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L  
Sbjct: 21  TFQDFQLSESLMKAINRMGFEEATPIQAETIPLGLQNKDVIGQAQTGTGKTAAFGIPLVE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 81  KIDPASPNI------QAIIIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRS 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + + +++ VVLDEADEML++GF +DIE IL + P + 
Sbjct: 135 LKKNPHIIVGTPGRLLDHINRRTMRLQNVETVVLDEADEMLNMGFIEDIESILSNVPSEH 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + +    + + +  +L 
Sbjct: 195 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLDIHERKKFDTLTRLLD 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + +IVF  T+  V   T+ L    +    + G+L+Q +R  AL+  ++G   V +A
Sbjct: 255 IQSPELSIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKEGSIDVLVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAGR GM++  I    +     + 
Sbjct: 315 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGRTGMAMTFITPREKDMLRAIE 374

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +     +  ++           LL  HD   + A
Sbjct: 375 QTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDHDSVTVVA 434

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
             +++    +    + TPV L          +R  +  
Sbjct: 435 AAIKM----MTKEPDATPVRLTDEAPMVSKRNRNNRSS 468


>gi|16800283|ref|NP_470551.1| hypothetical protein lin1214 [Listeria innocua Clip11262]
 gi|16413688|emb|CAC96445.1| lin1214 [Listeria innocua Clip11262]
          Length = 470

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 149/536 (27%), Positives = 246/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  ++ E 
Sbjct: 6   LSEEIKRAINELGYKEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVVWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     +  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ + + + +ASE                 +++  + ++L      +
Sbjct: 180 ATLPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    N++
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNIT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P++  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTIIEVK-------------ANEEAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
 gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
           SB155-2]
          Length = 471

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 228/468 (48%), Gaps = 15/468 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ + G+   + +Q+  +   L  KD++  A TG+GKT AF L L + L  +
Sbjct: 7   NLKPQIMKAIEQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPLLNMLELD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL I PTRELA QV  E+  L    G+  A   GG S  R+   + N A
Sbjct: 67  GE-------VEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAA 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V      L     GK         VVLDEADEMLD+GF DDI+ I +  P  R+ L+F
Sbjct: 120 VVVATPGRLLDLLKSGKIELNPK--FVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LA+        ++I  +   + +I     +V   +RD A++ +L Y    
Sbjct: 178 SATMPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC  +  V R  + L    +    L G++ Q++R   ++  + G   + IATDVAA
Sbjct: 238 KSIIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIEILIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  +  +PE+ +HR GRTGRAG++G+++ ++  +  ++  R+ +E   
Sbjct: 298 RGLDISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVGS 357

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           S++ +  P+   ++    + +L D +    +  +  ++V++L ++ D    A     +  
Sbjct: 358 SLINKEIPTSAEVKNEKQKSML-DMILSQEVSKEAIELVELLESQIDISTAALKLASMVI 416

Query: 426 AGLCAPEEITPVSLVSGRDR-----FRDDSRAFKVGGGSRDNFKGSSW 468
                         +   ++      R+ SR  + GG +   ++G+  
Sbjct: 417 KNDTVSGNERIGKSLKEIEKMLEQAKRELSRPQRSGGRNNRGYRGNRR 464


>gi|254830000|ref|ZP_05234655.1| hypothetical protein Lmon1_01525 [Listeria monocytogenes 10403S]
          Length = 470

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 151/536 (28%), Positives = 245/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ + + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEEAFHKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|260558407|ref|ZP_05830603.1| helicase [Enterococcus faecium C68]
 gi|261207113|ref|ZP_05921802.1| helicase [Enterococcus faecium TC 6]
 gi|289567232|ref|ZP_06447617.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|293556891|ref|ZP_06675452.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
 gi|293567807|ref|ZP_06679148.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|294615128|ref|ZP_06695014.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|294617803|ref|ZP_06697416.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|260075581|gb|EEW63887.1| helicase [Enterococcus faecium C68]
 gi|260078741|gb|EEW66443.1| helicase [Enterococcus faecium TC 6]
 gi|289160980|gb|EFD08895.1| ATP-dependent RNA helicase exp9 [Enterococcus faecium D344SRF]
 gi|291589392|gb|EFF21199.1| cold-shock deAd box protein a [Enterococcus faecium E1071]
 gi|291592070|gb|EFF23693.1| Putative ATP-dependent RNA helicase [Enterococcus faecium E1636]
 gi|291595943|gb|EFF27223.1| ATP-dependent RNA helicase [Enterococcus faecium E1679]
 gi|291600975|gb|EFF31266.1| ATP-dependent RNA helicase [Enterococcus faecium E1039]
          Length = 503

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|325676644|ref|ZP_08156320.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|325552534|gb|EGD22220.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 453

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 141/446 (31%), Positives = 236/446 (52%), Gaps = 20/446 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + + +ALS+ GY + + +Q A +   L  KDV+  AQTG+GKT AF + + S
Sbjct: 16  TFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKDVVGLAQTGTGKTAAFAIPILS 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERR 119
            L  +         P AL +APTRELA+QV     ++     G+ V    GG +   +  
Sbjct: 76  RLDVDR------KVPQALILAPTRELALQVAEAFGKYSAHIPGLQVLPIYGGQAYGVQLS 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I+VGTPGR+ DH+    L++S+L+ +VLDEADEML +GF+DD+E IL  +P+ 
Sbjct: 130 GLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMGFQDDVERILADTPEY 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+ PAI  ++K Y  D V + + ++    S+I  R V VA   + +A+  IL
Sbjct: 190 KQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWVQVAHQRKLDALTRIL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T+ +     + L    F   A++G++ Q +R   +  ++ G   + +
Sbjct: 250 EVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGALDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR G ++  +    +   + +
Sbjct: 310 ATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDALLFVAPRERHLLKSI 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDP-- 413
            R     +     P+VE +  +   +        +S+  +     +K+++    +HD   
Sbjct: 370 ERTTRQPLTEIQLPTVEDVNAQRVSKFGDS--ITESLNSENLALFRKLIEDYEREHDVPL 427

Query: 414 EKIAAGFLRIHRAG---LCAPEEITP 436
             IAA      R G   L APE   P
Sbjct: 428 ADIAAALAVQSRDGESFLMAPEPPAP 453


>gi|257885750|ref|ZP_05665403.1| helicase [Enterococcus faecium 1,231,501]
 gi|257821606|gb|EEV48736.1| helicase [Enterococcus faecium 1,231,501]
          Length = 503

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKNPHHVKIKAKEVTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|313609131|gb|EFR84825.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL F2-208]
          Length = 470

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 156/537 (29%), Positives = 248/537 (46%), Gaps = 76/537 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALIGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    NV+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLNVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV---SADGVDLLRRTVKLDKGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       V  + R+ K+ KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLDMMRSRKV-KGRRLKVNEARK 469


>gi|317128977|ref|YP_004095259.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473925|gb|ADU30528.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 482

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 141/537 (26%), Positives = 242/537 (45%), Gaps = 68/537 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  VI +A+    Y  LT VQ+ +L   L  KD++V + TGSGKT AF + +   +  + 
Sbjct: 11  LSDVINKAIHALNYYELTDVQKEVLPLSLENKDLIVKSPTGSGKTAAFAIPICEQVTWDE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 ++P AL + PTRELA QV  E   +     +      G     R++ +L+   H
Sbjct: 71  ------NSPQALVLTPTRELAAQVKEEFMNIGRLKRIKALAIYGKQPFDRQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-PKKRRMLMF 185
           +VVGTPGRL DH++   L ++ +K +V+DEADEM + GF D ++ IL       +   ++
Sbjct: 125 VVVGTPGRLLDHLQKGTLKMNKIKYLVIDEADEMFNRGFFDQVDSILKHLANYDKVTSIY 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATIS A+  ++  +  + +++NI  +      I    VLV  + + +AI ++       
Sbjct: 185 SATISEAVEHISTRFMINPIKINIERKQINAHPISQSYVLVNKNAKFSAIQDVTIVENPD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVFC T+ +V +  K L +  +    + G L Q+ER + +   ++G+ R  + T++AA
Sbjct: 245 SCIVFCETQVNVDKLYKQLRDANYSCGKIHGGLPQKERFSVMNEFKEGKFRYLVTTNLAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ ++  + E  +HR+GRTGRAG KG ++  I  + +     +      
Sbjct: 305 RGIDIESISLVINYDMPLDKEVYVHRTGRTGRAGNKGKAITFITPDERILFREIEDYIGY 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           ++     PS     ER+ +R+   P F D +                             
Sbjct: 365 AIPPMNIPS-----EREVERL--KPAFEDKM----------------------------- 388

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                                  +    K    S+ N      +  + G K+K  A   +
Sbjct: 389 ----------------------RNRPLTKRNKASQLNTNIMQLYF-NGGKKKKLRAADFV 425

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
             +     I    IG I +Q   T+V++  +   ++ + +K    KG  LK    +K
Sbjct: 426 GTITSIPTITSDDIGVITIQERETYVDILNNKGPIVLQEMKQRTIKGKTLKVHPAKK 482


>gi|319957469|ref|YP_004168732.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419873|gb|ADV46983.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 477

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 224/454 (49%), Gaps = 12/454 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N    + +A+ E G+   + VQ+  +   L  +D++  A TG+GKT AFGL +  
Sbjct: 2   TFEDFNFKPQLAQAIKEAGFREPSPVQKEAIPLILEGRDLIAQAHTGTGKTAAFGLPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +        +  AL I PTRELA QV  E+        +  A   GG S  R+ + 
Sbjct: 62  QLSCDG-------SVEALVIVPTRELATQVSDEIFRFGKALSIRTATVYGGSSYTRQIQH 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +Q+ + +V      +     GK         V+LDEADEMLD+GF DDI+ I    P+ R
Sbjct: 115 VQSASVVVATPGRLIDLLQSGKISLSPR--FVILDEADEMLDMGFLDDIKEIFTHLPESR 172

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  I TLA+   KD   V+I   N  +  I     +V   +RD+A+V +L 
Sbjct: 173 QTLLFSATMSKEIRTLAQRILKDPATVSITGGNVTNEKIRQLFYVVDEPERDDALVRLLD 232

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y     +I+FC  +  V R    LA   +    L G++ Q++R   ++  ++G+A + IA
Sbjct: 233 YKNPDKSIIFCRMKKEVDRLRDFLAAQGYDAKGLHGDMDQRQREATIRAFKNGQAEILIA 292

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D+  V +  L  +PE+ +HR GRTGRAGR+G ++ ++  +  R  +R+ 
Sbjct: 293 TDVAARGLDVNDVSHVFNYHLPFDPESYVHRIGRTGRAGREGTAISIVSPHEFRSLQRIQ 352

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    S+     P +E +R + +  ++Q     + +     ++++ L  ++D   +A   
Sbjct: 353 KSVGSSIESRIIPRIEEVRAQRSDALIQRIEKQE-VDTASYELIEELKEEYDLTTLACKL 411

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           L + R              +   +R     +  +
Sbjct: 412 LSMLRDEEEVRGADRIGKDLKEIERLFTRMKEER 445


>gi|52078994|ref|YP_077785.1| ATP-dependent RNA helicase YdbR [Bacillus licheniformis ATCC 14580]
 gi|52784366|ref|YP_090195.1| YdbR [Bacillus licheniformis ATCC 14580]
 gi|81691189|sp|Q65N62|CSHA_BACLD RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|52002205|gb|AAU22147.1| probable ATP-dependent RNA helicase YdbR [Bacillus licheniformis
           ATCC 14580]
 gi|52346868|gb|AAU39502.1| YdbR [Bacillus licheniformis ATCC 14580]
          Length = 487

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 227/472 (48%), Gaps = 14/472 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + +A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L  
Sbjct: 4   TFQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 64  KINPESPNI------QAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + +  +  VVLDEADEML++GF +DIE IL + P + 
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEH 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L 
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLD 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF  T+  V   T+ L    +    + G+L+Q +R  AL+  + G   V +A
Sbjct: 238 IQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + 
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIE 357

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +    AP+++   E   Q  +     +  ++           LL  HD   + A
Sbjct: 358 QTTKRKMDRMKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVA 417

Query: 419 GFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
             +++             E  P+     ++     S+    GG    N + S
Sbjct: 418 AAIKMMTKEPDNTPVRLTEEAPLRTKRNKNHHHRSSKRRDGGGYRGKNNRSS 469


>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
 gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
          Length = 512

 Score =  226 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 230/441 (52%), Gaps = 14/441 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL + + +  +N
Sbjct: 11  LDEKVVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPIINKIDQKN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L       V    GG  + R+ R L+    
Sbjct: 71  NNI------QALIIAPTRELAIQVSEELYKLSYDKHARVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D I  + L + +++ +VLDEADEML++GF DDIE IL S P +R+ L+FS
Sbjct: 125 IIVGTPGRMLDLINRRVLKLENVETLVLDEADEMLNMGFIDDIEAILKSVPSERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  +A+ +      V I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIAERFMHSPELVRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIIFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +     P+ +       R AQ  +++ +  +++  D       LL K+D   IAA  L++
Sbjct: 365 MEPLKPPTWDEAFAGQLRVAQEKIEEAITQENL-ADYAVFAGQLLEKYDATDIAAAMLKM 423

Query: 424 HRAGLCAPEEITPVSLVSGRD 444
               +    + TPV +   R 
Sbjct: 424 ----IAKEPDKTPVHITEERP 440


>gi|327439299|dbj|BAK15664.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 481

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 151/540 (27%), Positives = 233/540 (43%), Gaps = 71/540 (13%)

Query: 1   MKI-FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   F   P    +  AL +  Y   T VQ+ +L   L+E+D++V AQTGSGKT AF + 
Sbjct: 1   MTTNFNEFPLSPELQNALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +    ++      P AL + PTRELAVQV  E   +     +      G      +
Sbjct: 61  ICENIEWIENK------PQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + +L+   HI VGTPGR+ DHI    L +  ++ VVLDEADEML++GF + +E IL    
Sbjct: 115 QDELKQKTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVE 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +  M++FSAT+  +I  LA NY  D V + + SE       ++  + V   ++  A+  
Sbjct: 175 HREVMMLFSATVPESIKKLASNYLNDPVDIEVQSEEAAPKI-EHAVIEVQDEEKTAAVEK 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I         I+FC T+  V      L +  + V  L G + Q  R   +   + G  R 
Sbjct: 234 IAVVENPDTCIIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRY 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ ++ LVI+ +L    E  +HR+GRTGRAG++G +V  +         
Sbjct: 294 LVATDVAARGIDIENISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTPFEHDFLA 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +      ++     P+ E + E  A+              D+K        K    K+ 
Sbjct: 354 GIEELIGFTITKVDLPTHEEV-EAKAEAF------------DKKMQSRPQKKKQKNAKVD 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A   +++  G                                              G K+
Sbjct: 401 ANITKLYFNG----------------------------------------------GKKK 414

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
           K  A   +  + +  G+    IG I +    TFVE+     +L+ + +K    KG QLK 
Sbjct: 415 KLRAVDFVGTIAKIPGMTAADIGIITILDTSTFVEILNGKGNLVLKAMKTTPIKGKQLKV 474


>gi|257896496|ref|ZP_05676149.1| helicase [Enterococcus faecium Com12]
 gi|257833061|gb|EEV59482.1| helicase [Enterococcus faecium Com12]
          Length = 503

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIIFQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|58336606|ref|YP_193191.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227903163|ref|ZP_04020968.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253923|gb|AAV42160.1| ATP-dependent RNA helicase-like protein [Lactobacillus acidophilus
           NCFM]
 gi|227869149|gb|EEJ76570.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus acidophilus
           ATCC 4796]
          Length = 495

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 222/445 (49%), Gaps = 10/445 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNEALLKAIKRSGFEEATPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QIIDKKE------KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++   +++  +K VVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  + + +  +   V I ++      ID   V    S++ + +  +
Sbjct: 175 RNQTLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 235 IDVQGPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+R +  Q   Q    ++S  G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALRGQLKQAKAQIEDLINSDLGKYTQDASELLDNYSAVDLV 414

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVS 441
           A FL+ + +       +ITP   + 
Sbjct: 415 AAFLKNLSKDSTDIKVKITPEKPLP 439


>gi|227550862|ref|ZP_03980911.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257887886|ref|ZP_05667539.1| helicase [Enterococcus faecium 1,141,733]
 gi|257893315|ref|ZP_05672968.1| helicase [Enterococcus faecium 1,231,408]
 gi|293379275|ref|ZP_06625421.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
 gi|227179960|gb|EEI60932.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecium
           TX1330]
 gi|257823940|gb|EEV50872.1| helicase [Enterococcus faecium 1,141,733]
 gi|257829694|gb|EEV56301.1| helicase [Enterococcus faecium 1,231,408]
 gi|292642071|gb|EFF60235.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
          Length = 503

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 135/447 (30%), Positives = 217/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +++   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELELSPELLKSVERAGFEEATPIQAETIPLALVGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L IAPTRELA+Q   EL  L     V V    GG  + R+ R
Sbjct: 61  EKIDPDRHE------LQGLVIAPTRELAIQTQEELYRLGRDKKVRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P +
Sbjct: 115 GLKDRPHIVVGTPGRMLDHINRHTLKLGTVQTLVLDEADEMLNMGFLEDIEKIISQVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  + 
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKSPHHVKIKAKEMTADLIDQYYVRAKEYEKFDIMTRLF 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYRAEGIHGDLSQQKRMSVLRSFKSGHLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMDYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + + 
Sbjct: 355 ENLTKKRMTTLRPPTEKEAFKGQLGAAVEQIETKLAENGLDKYLQTADKLLEEYSAQDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P +  PV +   R 
Sbjct: 415 ALLLK---TTAKDPADAVPVKITPERP 438


>gi|255973920|ref|ZP_05424506.1| helicase [Enterococcus faecalis T2]
 gi|255966792|gb|EET97414.1| helicase [Enterococcus faecalis T2]
          Length = 515

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 224/450 (49%), Gaps = 11/450 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + + A+N           L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  + LL K+    +A
Sbjct: 355 ENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDIEENGLDKYLESAEALLEKYSATDLA 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVSGRDR 445
           A  L+          P +ITP   +    +
Sbjct: 415 ALLLKTVAKDPADAVPVKITPERPLPSNKK 444


>gi|257081095|ref|ZP_05575456.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256989125|gb|EEU76427.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 513

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 224/450 (49%), Gaps = 11/450 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + + A+N           L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  + LL K+    +A
Sbjct: 355 ENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLA 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVSGRDR 445
           A  L+          P +ITP   +    +
Sbjct: 415 ALLLKTVAKDPADAVPVKITPERPLPSNKK 444


>gi|255971301|ref|ZP_05421887.1| helicase [Enterococcus faecalis T1]
 gi|256617719|ref|ZP_05474565.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256761605|ref|ZP_05502185.1| helicase [Enterococcus faecalis T3]
 gi|256854305|ref|ZP_05559669.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256957293|ref|ZP_05561464.1| helicase [Enterococcus faecalis DS5]
 gi|256959973|ref|ZP_05564144.1| helicase [Enterococcus faecalis Merz96]
 gi|256964332|ref|ZP_05568503.1| helicase [Enterococcus faecalis HIP11704]
 gi|257077733|ref|ZP_05572094.1| helicase [Enterococcus faecalis JH1]
 gi|257083763|ref|ZP_05578124.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086188|ref|ZP_05580549.1| helicase [Enterococcus faecalis D6]
 gi|257089260|ref|ZP_05583621.1| helicase [Enterococcus faecalis CH188]
 gi|257415413|ref|ZP_05592407.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257418444|ref|ZP_05595438.1| helicase [Enterococcus faecalis T11]
 gi|257421095|ref|ZP_05598085.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294781261|ref|ZP_06746607.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300859873|ref|ZP_07105961.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|255962319|gb|EET94795.1| helicase [Enterococcus faecalis T1]
 gi|256597246|gb|EEU16422.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256682856|gb|EEU22551.1| helicase [Enterococcus faecalis T3]
 gi|256709865|gb|EEU24909.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256947789|gb|EEU64421.1| helicase [Enterococcus faecalis DS5]
 gi|256950469|gb|EEU67101.1| helicase [Enterococcus faecalis Merz96]
 gi|256954828|gb|EEU71460.1| helicase [Enterococcus faecalis HIP11704]
 gi|256985763|gb|EEU73065.1| helicase [Enterococcus faecalis JH1]
 gi|256991793|gb|EEU79095.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994218|gb|EEU81520.1| helicase [Enterococcus faecalis D6]
 gi|256998072|gb|EEU84592.1| helicase [Enterococcus faecalis CH188]
 gi|257157241|gb|EEU87201.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257160272|gb|EEU90232.1| helicase [Enterococcus faecalis T11]
 gi|257162919|gb|EEU92879.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294451597|gb|EFG20053.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850691|gb|EFK78440.1| DEAD-box ATP-dependent RNA helicase CshA [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480025|gb|ADX79464.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 515

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 224/450 (49%), Gaps = 11/450 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   +  A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + + A+N           L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  NKIDADN------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++
Sbjct: 115 GLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K    V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  + LL K+    +A
Sbjct: 355 ENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLA 414

Query: 418 AGFLR--IHRAGLCAPEEITPVSLVSGRDR 445
           A  L+          P +ITP   +    +
Sbjct: 415 ALLLKTVAKDPADAVPVKITPERPLPSNKK 444


>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
 gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
          Length = 478

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 230/477 (48%), Gaps = 23/477 (4%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I FEN+   +     L   G+ + T +QE  +   L   DVL  +QTG+GKT A+ L 
Sbjct: 1   MTISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +   N          AL + PTRELA QV   L+    +  + +    GG S+ R+
Sbjct: 61  ILEQIDTRNSNV------QALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L +  L+  VLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRSLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
             R    FSAT+   I  L   + K  V V++       + ID    ++     +  A+ 
Sbjct: 175 DARNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   RDG+ +
Sbjct: 235 PILEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFRDGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +I    +R  
Sbjct: 295 LVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPIDRRMV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++ +     +     PS   +  +  +++   +++ L  + +      +V  L  ++DP
Sbjct: 355 RQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNQIKESLAGERM-ASFLPLVRELSDEYDP 413

Query: 414 EKIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           + IAA  L++     C          PE   P  ++  + ++  +        G+R 
Sbjct: 414 QAIAAAALQMIYDQDCPDWMKTDWEVPESTVPKPIIKRKGKYNSNKHNSNSNRGNRK 470


>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
          Length = 480

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/486 (29%), Positives = 231/486 (47%), Gaps = 27/486 (5%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I FEN+   +     L   G+ + T +QE  +   L   DVL  +QTG+GKT A+ L 
Sbjct: 1   MTISFENLGLSEARINQLQTLGFESPTEIQEKAIPLLLEGHDVLGQSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +   N          AL + PTRELA QV   L+    +  + +    GG S+ R+
Sbjct: 61  ILEQIDTRNSNV------QALILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L +  L+  VLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRSLERGVQIVVGTPGRVIDLLERKKLVLDSLRWAVLDEADEMLSMGFIDDVKTILRKTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
             R    FSAT+   I  L   + K  V V++       + ID    ++     +  A+ 
Sbjct: 175 DARNTACFSATMPREIRDLVNQFLKSPVTVSVERTQAAPTRIDQHLYMVPRGWSKRKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   R+G+ +
Sbjct: 235 PILEIEDPESAIIFVRTKQTASDLTSKLQEIGHSVDEYHGNLSQSQRERLVHRFREGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ ++    +R  
Sbjct: 295 LVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLVEPIDRRMV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHD 412
            ++ +     +     PS   +  +  +++  +    +S+ G+        V  L  ++D
Sbjct: 355 RQIEKRLRQKLETCKLPSRSQVEAKRLEKLQNE--IKESLAGERMASFLPLVRELSDEYD 412

Query: 413 PEKIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           P+ IAA  L++     C          PE   P  ++  + ++  +S   K  G S    
Sbjct: 413 PQAIAAAALQMIYDQDCPDWMKTDWEVPESTVPKPVIKRKGKY--NSNHSKHNGNSNRGN 470

Query: 464 KGSSWF 469
           +     
Sbjct: 471 RKIVTH 476


>gi|217964610|ref|YP_002350288.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|217333880|gb|ACK39674.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes HCC23]
 gi|307570824|emb|CAR84003.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
          Length = 470

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 155/537 (28%), Positives = 248/537 (46%), Gaps = 76/537 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV---SADGVDLLRRTVKLDKGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       V  + R+ K+ KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLDMMRSRKV-KGRRLKVNEARK 469


>gi|189025995|ref|YP_001933767.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
 gi|189018570|gb|ACD71188.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum
           SS14]
          Length = 649

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 164/610 (26%), Positives = 263/610 (43%), Gaps = 57/610 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FE +   +    A+  +G+   T +Q A +   L    +++  A+TG+GKT AFGL L 
Sbjct: 47  SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       SP   P AL + PTRELA QV  EL  L  +    +    GGVS+  + R
Sbjct: 107 QEL------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLR 160

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+VGT GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K 
Sbjct: 161 NLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKD 220

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            R+LMFSAT+   I ++A  +      V   +       I+    +V  +D+  A+V ++
Sbjct: 221 ARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLI 280

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VFC T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +
Sbjct: 281 DVSDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILV 340

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L
Sbjct: 341 ATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL 400

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQGDEKKMVDVLLAKHDP 413
            +  N  +     P VE I  +   RI          L  + + G   +    LL +   
Sbjct: 401 SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLK 460

Query: 414 EKIA------------------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            ++A                  A  L+IH      P +   +  ++          A K 
Sbjct: 461 ARVAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYRDIKTITPETARARPHDAEK- 519

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
                      ++  +  G K     + ++  +C    I    +  + +     F  +  
Sbjct: 520 -----------AYVRIEYGKKSYLTRKRVVQFICALVKIPGHLVDRVDITERCAFARIPR 568

Query: 516 DGVDLLRRTVKLDKGI-QLKYLG-----------GEKPDFRGYKSSGFKSKNSQDGATKR 563
              +   R  K  K + ++ ++G            EK  +     SG   +      T  
Sbjct: 569 RAAEEAVRLSKKRKDLPRVSFVGHASRLRNTATPAEKSTYPRRLPSGEGLREQISRRTSS 628

Query: 564 FKRFKGASKN 573
            K+  G  ++
Sbjct: 629 SKKASGKPED 638


>gi|315635445|ref|ZP_07890711.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
 gi|315480203|gb|EFU70870.1| ATP-dependent RNA helicase DeaD [Arcobacter butzleri JV22]
          Length = 516

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 128/418 (30%), Positives = 217/418 (51%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  +++ +A+ E G+   + +QE  +   L  +D++  A TG+GKT AFGL + + +   
Sbjct: 7   NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKI--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S   A+ I PTRELA+QV  EL       G+  A   GG +  R+ + ++N +
Sbjct: 64  ----KAKSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV      L              K V+LDEADEMLD+GF DDI+ I    P+ R+ L+F
Sbjct: 120 VIVATPGRFLDLL--RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK   K+   V +   +  +S I     +V   +RD+A++ +  +   K
Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC T+  V R +  L    F   AL G++ Q++R  A++  +  +  + IATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  + E+ +HR GRTGRAG++GM++ ++  +  R  +++ +    
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +  P++  ++++    + Q  L  + I+    ++V+ L  + D   IA     I
Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVLEQE-IKDYALELVEELKEEFDVSTIAFKLASI 414


>gi|290894075|ref|ZP_06557049.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
 gi|290556419|gb|EFD89959.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL J2-071]
          Length = 470

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/537 (28%), Positives = 249/537 (46%), Gaps = 76/537 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L     +   + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKANK---IHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV---SADGVDLLRRTVKLDKGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       V  + R+ K+ KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLDMMRSRKV-KGRRLKVNEARK 469


>gi|157736313|ref|YP_001488996.1| DEAD-box ATP dependent DNA helicase [Arcobacter butzleri RM4018]
 gi|157698167|gb|ABV66327.1| ATP-dependent RNA helicase, DEAD box family [Arcobacter butzleri
           RM4018]
          Length = 516

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 128/418 (30%), Positives = 217/418 (51%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  +++ +A+ E G+   + +QE  +   L  +D++  A TG+GKT AFGL + + +   
Sbjct: 7   NFKELLQKAIDEAGFKEPSPIQEQAIPYILDGRDIVGQAHTGTGKTAAFGLPILNKI--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S   A+ I PTRELA+QV  EL       G+  A   GG +  R+ + ++N +
Sbjct: 64  ----KAKSGVEAVVIVPTRELAMQVSDELYRFGKFLGINTATVYGGQAYARQIKLIENSS 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV      L              K V+LDEADEMLD+GF DDI+ I    P+ R+ L+F
Sbjct: 120 VIVATPGRFLDLL--RGDKISIKPKFVILDEADEMLDMGFLDDIKEIFTFLPENRQTLLF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK   K+   V +   +  +S I     +V   +RD+A++ +  +   K
Sbjct: 178 SATMPTAIKNLAKTILKEPEFVTLTKSDVTNSKITQTFYVVDEKERDDALIRLFDFKNPK 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+FC T+  V R +  L    F   AL G++ Q++R  A++  +  +  + IATDVAA
Sbjct: 238 KSIIFCRTKKDVDRLSTFLVSQGFMAKALHGDMEQKQREEAIRAFKSSKLEILIATDVAA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  + E+ +HR GRTGRAG++GM++ ++  +  R  +++ +    
Sbjct: 298 RGLDVNDVTHVFNYHLPFDSESYVHRIGRTGRAGKEGMAISIVTPHEFRMLQKIEKSIGT 357

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +  +  P++  ++++    + Q  L  + I+    ++V+ L  + D   IA     I
Sbjct: 358 KLESKVVPNIGLVKKKKFAELKQQVLEQE-IKDYALELVEELKEEFDVSTIAFKLASI 414


>gi|257867061|ref|ZP_05646714.1| helicase [Enterococcus casseliflavus EC30]
 gi|257873396|ref|ZP_05653049.1| helicase [Enterococcus casseliflavus EC10]
 gi|257877139|ref|ZP_05656792.1| helicase [Enterococcus casseliflavus EC20]
 gi|257801117|gb|EEV30047.1| helicase [Enterococcus casseliflavus EC30]
 gi|257807560|gb|EEV36382.1| helicase [Enterococcus casseliflavus EC10]
 gi|257811305|gb|EEV40125.1| helicase [Enterococcus casseliflavus EC20]
          Length = 507

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 223/447 (49%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   +  ++   G+   T +QEA +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N +         L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  EKIDPTNHQ------LQGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P  
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDV 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDIMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G+  + +
Sbjct: 235 DVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + +A
Sbjct: 355 ENLTKKRMTPMRPPTEKEAFKGQLGAAIESVETKLDENGLDKYLQAADDLLERYSAQDLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P ++ PV +   R 
Sbjct: 415 ALLLKTMAKD---PADLAPVKITPERP 438


>gi|45659052|ref|YP_003138.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602298|gb|AAS71775.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 521

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 227/462 (49%), Gaps = 23/462 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 15  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                 +    AL + PTREL +QV  +   L    G    V   GG  + R+ R L+  
Sbjct: 75  ------SKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   +++  +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 129 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  + TL K +Q     +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 189 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R G   + +ATDVA
Sbjct: 249 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 309 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 368

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + +     P+++ + E         ++  +    I     ++  ++   +    IAA   
Sbjct: 369 IKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTALDIAAALF 428

Query: 422 RI-------------HRAGLCAPEEITPVSLVSGRDRFRDDS 450
           ++                     EE       SG  R+RD +
Sbjct: 429 KMTILKDSVTFDDSVQFESDFKYEEKHSTKKKSGGGRYRDRN 470


>gi|291060131|gb|ADD72866.1| dead-box ATP-dependent rna helicase ydbr [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 644

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 164/610 (26%), Positives = 263/610 (43%), Gaps = 57/610 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FE +   +    A+  +G+   T +Q A +   L    +++  A+TG+GKT AFGL L 
Sbjct: 42  SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 101

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       SP   P AL + PTRELA QV  EL  L  +    +    GGVS+  + R
Sbjct: 102 QEL------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLR 155

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+VGT GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K 
Sbjct: 156 NLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKD 215

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            R+LMFSAT+   I ++A  +      V   +       I+    +V  +D+  A+V ++
Sbjct: 216 ARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLI 275

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VFC T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +
Sbjct: 276 DVSDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILV 335

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L
Sbjct: 336 ATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL 395

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQGDEKKMVDVLLAKHDP 413
            +  N  +     P VE I  +   RI          L  + + G   +    LL +   
Sbjct: 396 SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLK 455

Query: 414 EKIA------------------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            ++A                  A  L+IH      P +   +  ++          A K 
Sbjct: 456 ARVAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYRDIKTITPETARARPHDAEK- 514

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
                      ++  +  G K     + ++  +C    I    +  + +     F  +  
Sbjct: 515 -----------AYVRIEYGKKSYLTRKRVVQFICALVKIPGHLVDRVDITERCAFARIPR 563

Query: 516 DGVDLLRRTVKLDKGI-QLKYLG-----------GEKPDFRGYKSSGFKSKNSQDGATKR 563
              +   R  K  K + ++ ++G            EK  +     SG   +      T  
Sbjct: 564 RAAEEAVRLSKKRKDLPRVSFVGHASRLRNTATPAEKSTYPRRLPSGEGLREQISRRTSS 623

Query: 564 FKRFKGASKN 573
            K+  G  ++
Sbjct: 624 SKKASGKPED 633


>gi|323465797|gb|ADX69484.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus helveticus
           H10]
          Length = 499

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 222/445 (49%), Gaps = 10/445 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QSIDKKE------KAIQAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL     
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIQDIESILKYVKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT+   I  + + + KD   V I ++      ID   V    S++ + +  +
Sbjct: 175 CKQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+R +  Q   +    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRLPTDDQALRGQLKQAKAEIEDLMNGDLGKYTQDASELLDNYSALDLV 414

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVS 441
           A FL+ + +       +ITP   +S
Sbjct: 415 AAFLKNLAKDSTDIKVKITPEKPLS 439


>gi|294828452|ref|NP_714230.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|293386306|gb|AAN51248.2| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
          Length = 516

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 227/462 (49%), Gaps = 23/462 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  A+ E G+   + +Q   +   L+ KD++  AQTG+GKT AF +     L  E
Sbjct: 10  NLSAEIQNAILEMGFEEASPIQSEAIPVILKGKDIIGHAQTGTGKTAAFAIPTIELLEVE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                 +    AL + PTREL +QV  +   L    G    V   GG  + R+ R L+  
Sbjct: 70  ------SKHLQALILCPTRELVIQVSEQFRKLIKYKGNFEVVPIYGGQEIERQLRALRKN 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGR+ DH+R   +++  +K VVLDEADEMLD+GFR+D+EFIL  +P  R+ +M
Sbjct: 124 PQIVIATPGRMMDHMRRGSIHLDEIKIVVLDEADEMLDMGFREDMEFILKDTPADRQTIM 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  + TL K +Q     +++  +      I+     +  + +  A+  ++ Y   
Sbjct: 184 FSATMTDDVLTLMKKFQNHPQIIDVTHQKLSAPKIEQIYYEIQENAKGEALARLIEYRNV 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A+VFC+T+A V    ++L    +   AL G+L+Q++R   +   R G   + +ATDVA
Sbjct: 244 KLALVFCNTKAQVDTVVELLKSRGYFAEALHGDLNQKQRDKVMSGFRKGSIEILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+ ++E V + +L  + E+ +HR GRTGRAG+KG++   I        +++ R   
Sbjct: 304 GRGIDVNNVEAVFNYDLPRDGEDYVHRIGRTGRAGKKGIAFSFIVGKQIYNLKKIERING 363

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           + +     P+++ + E         ++  +    I     ++  ++   +    IAA   
Sbjct: 364 IKIEAGKIPTLDDLEETKIHSYTSKVRSIVDAGHIGKYVNQVEKLMGDDYTALDIAAALF 423

Query: 422 RI-------------HRAGLCAPEEITPVSLVSGRDRFRDDS 450
           ++                     EE       SG  R+RD +
Sbjct: 424 KMTILKDSVTFDDSVQFESDFKYEEKHSTKKKSGGGRYRDRN 465


>gi|15639757|ref|NP_219207.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|3323078|gb|AAC65738.1| ATP-dependent RNA helicase [Treponema pallidum subsp. pallidum str.
           Nichols]
          Length = 649

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 164/610 (26%), Positives = 263/610 (43%), Gaps = 57/610 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FE +   +    A+  +G+   T +Q A +   L    +++  A+TG+GKT AFGL L 
Sbjct: 47  SFEELGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLI 106

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       SP   P AL + PTRELA QV  EL  L  +    +    GGVS+  + R
Sbjct: 107 QEL------GSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVYGGVSIAEQLR 160

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+VGT GR+ DHI    L +S+L+  +LDEADEML++GF +DIE I   + K 
Sbjct: 161 NLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKD 220

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            R+LMFSAT+   I ++A  +      V   +       I+    +V  +D+  A+V ++
Sbjct: 221 ARVLMFSATMPRQILSIASTFMGSYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLI 280

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VFC T+A      K L E  + V AL G++ Q +R   L+  R  RAR+ +
Sbjct: 281 DVSDNFYGLVFCQTKADADTVAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILV 340

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  V++  +  +     HR GRTGRAG +G+++  +  +  RR E L
Sbjct: 341 ATDVAARGIDIEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL 400

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ------DPLFLDSIQGDEKKMVDVLLAKHDP 413
            +  N  +     P VE I  +   RI          L  + + G   +    LL +   
Sbjct: 401 SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRFAQRLLQEDLK 460

Query: 414 EKIA------------------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            ++A                  A  L+IH      P +   +  ++          A K 
Sbjct: 461 ARVAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYRDIKTITPETARARPHDAEK- 519

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
                      ++  +  G K     + ++  +C    I    +  + +     F  +  
Sbjct: 520 -----------AYVRIEYGKKSYLTRKRVVQFICALVKIPGHLVDRVDITERCAFARIPR 568

Query: 516 DGVDLLRRTVKLDKGI-QLKYLG-----------GEKPDFRGYKSSGFKSKNSQDGATKR 563
              +   R  K  K + ++ ++G            EK  +     SG   +      T  
Sbjct: 569 RAAEEAVRLSKKRKDLPRVSFVGHASRLRNTATPAEKSTYPRRLPSGEGLREQISRRTSS 628

Query: 564 FKRFKGASKN 573
            K+  G  ++
Sbjct: 629 SKKASGKPED 638


>gi|319648379|ref|ZP_08002595.1| DeaD protein [Bacillus sp. BT1B_CT2]
 gi|317389458|gb|EFV70269.1| DeaD protein [Bacillus sp. BT1B_CT2]
          Length = 481

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 148/536 (27%), Positives = 246/536 (45%), Gaps = 67/536 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL   GY + T+VQ  ++   L+++DV+V ++TGSGKT AFG+ L      E 
Sbjct: 11  LSGDITKALDHLGYKHPTAVQSEVIPAALKKRDVVVKSRTGSGKTAAFGIPLCELTEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  +L  +     +  A   G  S  R++ +L+   H
Sbjct: 71  NK------PQALILTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI      +  LK +V+DEAD+ML++GF D +  I+   P++R  ++FS
Sbjct: 125 IVVGTPGRVLDHIEKGTFPLEKLKYLVIDEADKMLNMGFIDQVGAIIRHLPEERLTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+  Y KD +++ + +     +DI+++ ++V  +D  + +V+++      +
Sbjct: 185 ATFPEDVEQLSLQYMKDPLKIEMKAGGTTTADIEHQLIIVDENDPFSLLVDLIIVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+  V+   + LA   +    + G + Q++R   +   R G  R  IATDVAAR
Sbjct: 245 CIVFCRTQEQVNELQRRLAGLGYPCAKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ EL  + E+ +HR+GRTGRAG +G ++ +     +     +       
Sbjct: 305 GIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASPREKGMIADIEDYIGFP 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     PS E I                                       A FL+    
Sbjct: 365 IPIIETPSKEEIARAK-----------------------------------AAFLK---- 385

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                               + +++       S    K       + G K+K  A   + 
Sbjct: 386 --------------------KINTKPELKQDKSEPLNKEIMRLYFNGGKKKKLRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  G++ + IG I +Q   +FVE+      L+   +K    KG  LK     K
Sbjct: 426 TIAKIDGVSAEDIGIITIQEQGSFVEILNGKGPLVLDAMKNTTVKGKLLKVHKARK 481


>gi|315586245|gb|ADU40626.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 35A]
          Length = 492

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 234/467 (50%), Gaps = 18/467 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAKAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    ++I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDARVSEAIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
               GL   E     +      +  +          S    +    +
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPSNKKTHQHEQARSFKKGQHKDRY 479


>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
 gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
          Length = 515

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 216/446 (48%), Gaps = 9/446 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGNE------RHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    +   H+K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +    APS+  + E   QR+  + L   +   +          +   +  + 
Sbjct: 356 IERLTKRKIARRRAPSLGEVLEGQ-QRLAIESLVEMTDNLEALAPFKSSAEELLNDTDSV 414

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD 444
             L      L    + TPV++   + 
Sbjct: 415 TLLAAALKLLTKEPDTTPVNITEEKP 440


>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
 gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
 gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
          Length = 515

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 216/446 (48%), Gaps = 9/446 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGNE------RHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    +   H+K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +    APS+  + E   QR+  + L   +   +          +   +  + 
Sbjct: 356 IERLTKRKIARRRAPSLGEVLEGQ-QRLAIESLVEMTDNLEALAPFKSSAEELLNDTDSV 414

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD 444
             L      L    + TPV++   + 
Sbjct: 415 TLLAAALKLLTKEPDTTPVNITEEKP 440


>gi|78042906|ref|YP_359101.1| DEAD-box ATP dependent DNA helicase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995021|gb|ABB13920.1| ATP-dependent RNA helicase, DEAD box family [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 430

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 208/393 (52%), Gaps = 9/393 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+   +   + +A+++ G+   T +Q+  +   L   +++  A TG+GKT A+ L +
Sbjct: 1   MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               L + PTRELA+QV  E+  L     V      GG ++ R+ 
Sbjct: 61  LQRI-------QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  ++VGTPGR+ DHI  K    + +K V+LDEADEMLD+GF DDIE IL++   
Sbjct: 114 RGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTN 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I T+ K +      V +    +    I      +  +++   +V+I
Sbjct: 174 RQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSI 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVFC T+  V    + L    +    L G++SQ+ER+  ++  + G+  + 
Sbjct: 234 LNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD+  VI+ ++  NPE+ +HR GRTGRAGR+G ++ +I    ++  + 
Sbjct: 294 VATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKA 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +    N  +  E  P    + E   ++I +  L
Sbjct: 354 IEEAINKRLKREILPEPVDLEEARFKKIAKKIL 386


>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
 gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
          Length = 506

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 142/442 (32%), Positives = 229/442 (51%), Gaps = 14/442 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI +   +++   G+   T +QE  +   +  KD++  AQTG+GKT AFG+ L   +  +
Sbjct: 8   NISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPLIEKIDTK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +           L IAPTRELA+QV  EL  L     V +    GG  + R+ R L+N  
Sbjct: 68  DGNV------QGLIIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEISRQIRALKNRP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGRL DHI  + L + ++  ++LDEADEML++GF +DI+ I+ S P  R+ L+F
Sbjct: 122 QIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMASVPDTRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +A+ + K    V I S+     +I+   V     ++ + +  +L     +
Sbjct: 182 SATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V    K L    +    + G+LSQ +R + L+  + G+  + +ATDVAA
Sbjct: 242 LAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFKAGKIDILVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+KG++V  +          + R    
Sbjct: 302 RGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLSIVERTTKK 361

Query: 366 SVVWEPAPSV-EAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P+  EA+  ++R A   L +    +++ GD +     +L KHD   + A  L+
Sbjct: 362 KMEALVPPTANEAVLGQKRVAMEQLLEMTEKNNL-GDYRDFATQMLEKHDAVDLIAAALK 420

Query: 423 IHRAGLCAPEEITPVSLVSGRD 444
                +    E  PVS+   R 
Sbjct: 421 ----TMTKEPEDIPVSISEERP 438


>gi|325568403|ref|ZP_08144770.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
 gi|325158172|gb|EGC70325.1| cold-shock DEAD box protein A [Enterococcus casseliflavus ATCC
           12755]
          Length = 508

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 223/447 (49%), Gaps = 12/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   +  ++   G+   T +QEA +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFKDLELSNELLTSVERAGFEEATPIQEATIPLALAGKDVIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N +         L IAPTRELA+Q   EL  L     + V    GG  + R+ R
Sbjct: 61  EKIDPANHQ------LQGLVIAPTRELAIQTQEELYRLGKDKKIRVQAVYGGADIGRQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  HIVVGTPGR+ DHI    L +  ++ +VLDEADEML++GF +DIE I+   P  
Sbjct: 115 QLKDRPHIVVGTPGRMLDHINRHTLKLGTVETLVLDEADEMLNMGFLEDIEKIISQVPDV 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   + K+   V I ++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPPAIKNIGVKFMKEPEHVQIKAKEMTADLIDQYYVRSKDYEKFDVMTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF  T+  V    + L    ++   + G+LSQQ+R + L+  + G+  + +
Sbjct: 235 DVQSPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKSGQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMSYLHVI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  +     P+ +   +      ++  +    ++      +  D LL ++  + +A
Sbjct: 355 ENLTKKRMTPMRPPTEKEAFKGQLGAAIESVETKLDENGLDKYLQAADDLLERYSAQDLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRD 444
           A  L+        P ++ PV +   R 
Sbjct: 415 ALLLKTMAKD---PADLEPVKITPERP 438


>gi|296535750|ref|ZP_06897913.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
 gi|296263919|gb|EFH10381.1| ATP-dependent RNA helicase DeaD [Roseomonas cervicalis ATCC 49957]
          Length = 411

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 237/408 (58%), Positives = 292/408 (71%), Gaps = 2/408 (0%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +P+ +  AL+ERGY   T+VQ A+L P+   +D+LVSAQTGSGKTVAFGLALA  LL
Sbjct: 3   FPVMPEALLRALTERGYAEPTTVQAAVLEPETAGRDLLVSAQTGSGKTVAFGLALAPELL 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E +R  PA APLA+ +APTRELA+QV  EL WLYA  G  V  C+GG+    ERR L  
Sbjct: 63  GEAERMPPAGAPLAIVVAPTRELALQVRAELSWLYAAAGGRVVSCVGGMDPLAERRALAQ 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAHIVVGTPGRLCDH+    L    L+AVVLDEADEMLDLGFR+++E IL ++P++RR L
Sbjct: 123 GAHIVVGTPGRLCDHLDRGNLRPEALRAVVLDEADEMLDLGFREELEMILGAAPEERRTL 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+ P I  LA ++Q+DA+R++  +E  QH DI Y+AV VA  D + A+VN+LR   
Sbjct: 183 LFSATVPPEIERLAGHFQRDALRISAKAEGGQHRDIAYKAVQVAPQDTERAVVNLLRLSD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +  AIVFCSTRA+V+R    LAE  F  VALSGELSQ ERS ALQ +RDGRA+VC+ATDV
Sbjct: 243 SLRAIVFCSTRAAVTRLQANLAERGFSAVALSGELSQAERSRALQALRDGRAQVCVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGIDLPDL LVIHAEL   PE +LHRSGRTGRAGRKG+SV V+P N +R AERL   A
Sbjct: 303 AARGIDLPDLGLVIHAELPKEPETMLHRSGRTGRAGRKGISVLVVPPNRRRTAERLLMAA 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLA 409
            V   W PAP+ E IR +DA+R+      L  +    D+  + + LLA
Sbjct: 363 RVQAEWGPAPAAEEIRAKDAERLASQAQALLAEEASADDLAVAEALLA 410


>gi|126651493|ref|ZP_01723697.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
 gi|126591746|gb|EAZ85842.1| hypothetical protein BB14905_07414 [Bacillus sp. B14905]
          Length = 513

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 142/456 (31%), Positives = 233/456 (51%), Gaps = 14/456 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N          AL IAPTRELA+QV  EL  +     V +    GG  + R+ 
Sbjct: 61  IEKIDPKNPNI------QALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P 
Sbjct: 115 RALKNKPQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ PAI  +A+ + +D   V I ++     +ID   V  A  ++ + +  +
Sbjct: 175 ERQTLLFSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + AI+F  T+  V    + L+   +    + G+LSQ +R + L+  ++ +  + 
Sbjct: 235 LNVHQPELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +     P+ +       +  L   + L  ++  GD + +   +L  H+   +
Sbjct: 355 VEETTKKRMTPLRPPTTDEALVGQQRLALDTLEGLIANNNLGDYRTLASEILDNHEAIDV 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
            A  LR     L    + TPV++   R       R+
Sbjct: 415 VAAALR----SLTKEPDDTPVTISEERPLPMRRERS 446


>gi|15644875|ref|NP_207045.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 26695]
 gi|2313340|gb|AAD07315.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Helicobacter
           pylori 26695]
          Length = 492

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 241/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KPSNKKTPQHERARSFKKGQHRDRHPK 481


>gi|47097038|ref|ZP_00234610.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254828606|ref|ZP_05233293.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|254898593|ref|ZP_05258517.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J0161]
 gi|254911917|ref|ZP_05261929.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
 gi|254936243|ref|ZP_05267940.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|47014573|gb|EAL05534.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601004|gb|EEW14329.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes FSL N3-165]
 gi|258608833|gb|EEW21441.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes F6900]
 gi|293589878|gb|EFF98212.1| ATP-dependent RNA helicase DbpA [Listeria monocytogenes J2818]
          Length = 470

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 152/536 (28%), Positives = 245/536 (45%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T VQ+A++   L  +D++  +QTGSGKT AF + +A  +  E 
Sbjct: 6   LSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEWEE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTRELA+QV  E   +     V  A   G     +++ +L    H
Sbjct: 66  NK------PQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNH 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PK+R+ L FS
Sbjct: 120 IVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFS 179

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D + + +ASE                 +++  + ++L      +
Sbjct: 180 ATMPEEMQGLIKRYQDDPMVIEMASEKTNPILHVEIQT----DNKEKTLKDVLITENPDS 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   T +L         + G L Q++R  A+   + G++R  IATDVA R
Sbjct: 236 AIIFCNTKNQVDELTDLLDVKA---SKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGR 292

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG+ G ++  +  N       +    +V+
Sbjct: 293 GIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVT 352

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P+V  ++              +     +K+     + K   EK+    ++++  
Sbjct: 353 IEKKRKPTVIEVK-------------ANEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFN 399

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 400 G----------------------------------------------GKKKKIRAVDFVG 413

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 414 TISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 469


>gi|118443840|ref|YP_877556.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118134296|gb|ABK61340.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 476

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 146/532 (27%), Positives = 237/532 (44%), Gaps = 71/532 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + +   GY N T VQE  +   L+ KD++V +QTGSGKT +FG+ L   +  EN
Sbjct: 8   LSSEILKTIKMLGYKNPTEVQEKTIPLVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLEN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL + PTRELAVQ+  ++  +     V      G   +  ++  L+   H
Sbjct: 68  KK------PQALILTPTRELAVQIKEDISNIGRFKKVKCTAVYGKEPISIQKNQLKQRVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR  DHI+   L++S +K +++DEAD+ML++GF + +E I+      R  ++FS
Sbjct: 122 IVVGTPGRTFDHIQKGNLDLSDIKYLIIDEADKMLNMGFINQVEDIIKEITNDRITMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y     ++ I+ +N     I+     V  S R N +  ++      +
Sbjct: 182 ATLEERIEKLCKRYMNHPEKIEISKKNVTTDIIEQEYYKVNHSKRFNTLTKVIYAEVPDS 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V      +    F   AL G + Q++R   +   + G+ +  +ATDVAAR
Sbjct: 242 AIIFCNTKVEVGNVANKMKNQGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ E+    E+ +HR GRTGRAG KG S+  +    +R    +      S
Sbjct: 302 GIDVEEITHVINYEVPVEKESYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYS 361

Query: 367 VVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           V  +  P  E I +      ++  Q P F       +K     +  K     I AG  + 
Sbjct: 362 VPEKEMPQEEEIEKGKKLFEEKARQRPKF-------KKVKGHEIDKKITKIHINAGKKKK 414

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RAG                                             VG+        
Sbjct: 415 VRAGDI-------------------------------------------VGAINNI---- 427

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
             P +          IG I VQ   ++V++  +  +++ + +   KG +++ 
Sbjct: 428 --PGITSE------DIGIIDVQDAFSYVDILGNKGNIVLKNLDTIKGKKVRV 471


>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
 gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 515]
          Length = 528

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 240/451 (53%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTI------QALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKNPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVD--VLLAKHDP 413
                  +   +PA + EA + +     +RI +D    + +   +K   D   L  ++ P
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  PE +  V +   + 
Sbjct: 415 EELALYVLSLT---VQDPESLPEVEITREKP 442


>gi|284929206|ref|YP_003421728.1| superfamily I DNA/RNA helicaseI [cyanobacterium UCYN-A]
 gi|284809650|gb|ADB95347.1| DNA/RNA helicase, superfamily II [cyanobacterium UCYN-A]
          Length = 477

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 236/483 (48%), Gaps = 24/483 (4%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I FEN+   +     L E G+ N T +QE  +   L   DVL  +QTG+GKT A+ L 
Sbjct: 1   MTISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  ++       +   L + PTRELA QV   L+    +  + +    GG S+ R+
Sbjct: 61  ILEKVDIQDP------SVQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D I  K L +  L+  VLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRSLERGVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
           + R    FSAT+   I  L   + K  V +++       + I+    ++     +  A+ 
Sbjct: 175 ESRSTACFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   RDGR +
Sbjct: 235 PVLEIEDPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+  L  VI+ +L  N E  +HR GRTGRAG+ G ++ ++    +R  
Sbjct: 295 LVVATDIAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMI 354

Query: 357 ERLFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++ R+    +     P+   VEA R    Q ++++ L  + +      +V  L  ++D 
Sbjct: 355 RQIERKLRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERM-ASFLPLVSELSTEYDS 413

Query: 414 EKIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + IAA  L++     C          PE  TP   V GR   + +S+  K    +    +
Sbjct: 414 QAIAAAALQMIYDQDCPDWMKTDWEVPEAATP-KPVIGRKSNKYNSKNSKHNRNTGKVIR 472

Query: 465 GSS 467
            + 
Sbjct: 473 KTV 475


>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
 gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
          Length = 521

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 217/446 (48%), Gaps = 9/446 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGNE------RHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +    APS+  + E   QR+  + L   +   +          +   +  + 
Sbjct: 356 IERLTKRKIARRRAPSLGEVLEGQ-QRLAIESLVEMTDNLEALAPFKSSAEELLNDTDSV 414

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD 444
             L      L    + TPV++   + 
Sbjct: 415 TLLAAALKLLTKEPDTTPVNITEEKP 440


>gi|208434194|ref|YP_002265860.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
 gi|208432123|gb|ACI26994.1| ATP-dependent RNA helicase [Helicobacter pylori G27]
          Length = 492

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 235/470 (50%), Gaps = 23/470 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR---- 422
           +     P+   I E    + L D    + I    +++ ++     +P ++    L     
Sbjct: 380 IELLEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 423 -----IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +++  + A +     +      +     RA     G   +    +
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPSNKKTHPHERARSFKKGQHRDRHPKT 482


>gi|34557821|ref|NP_907636.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Wolinella
           succinogenes DSM 1740]
 gi|34483539|emb|CAE10536.1| ATP-DEPENDENT RNA HELICASE, DEAD-BOX FAMILY DEAD [Wolinella
           succinogenes]
          Length = 505

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 132/457 (28%), Positives = 227/457 (49%), Gaps = 14/457 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE     + +   + E G+   + +Q   +   L   D++  AQTG+GKT AFGL +   
Sbjct: 16  FEQFGFKENLLRGIHEAGFKVPSPIQVEAIPLVLGGHDLIAQAQTGTGKTAAFGLPIIQN 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +        +  AL I PTRELAVQ+  E+  L            GG ++ R+   L
Sbjct: 76  LKNDG-------SIEALIITPTRELAVQISDEIFKLGRNCRTKTVSVYGGQAIRRQVELL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    +++ TPGRL DH+R   L   +   +VLDE+DEMLD+GF DDIE I    P  R+
Sbjct: 129 EKAPQVIIATPGRLLDHLRNDRLKNFNPTTIVLDESDEMLDMGFLDDIEEIFTYLPASRQ 188

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA+    +   V + +    +SDI  R  ++   +R++AIV ++  
Sbjct: 189 TLLFSATMPAPIKNLAQKILHNPKMVKVTTNETTNSDISQRYYIINEYEREDAIVRLIDS 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F   +      +  L    +Q  AL G++ Q+ER  A+   + G   + +AT
Sbjct: 249 EAPSKTIIFTRMKKEADDLSNRLIAKGYQAGALHGDMEQRERQAAVNAFKQGAIDILVAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ ++  V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   R+  
Sbjct: 309 DVAARGLDISNVSHVFNYHIPLNPESYVHRIGRTGRAGKKGIAITLATPLEFKEIRRISE 368

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               ++     P++    ++   +++Q+ L   SI  D  ++ + +  + D  ++A   L
Sbjct: 369 TTKATIELYEIPTIAETLKQTDSKLIQN-LLNHSITDDALRIYEQIRGEIDTTQLACKLL 427

Query: 422 RIH--RAGLCAPEEI--TPVSLVSGRDRFRDDSRAFK 454
            +   ++ +  P +I  +   L+  ++R   D R  +
Sbjct: 428 SMLMKKSSIMGPNKIGLSKEDLMQLKNRLSGDDRRDR 464


>gi|160880145|ref|YP_001559113.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428811|gb|ABX42374.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 483

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 193/374 (51%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +ALS   Y+  T +QE ++   L  KD++  ++TGSGKT AF + +  +++ E 
Sbjct: 11  LCEEIIQALSMLHYIEPTPIQEKVIPLALEGKDIIAKSKTGSGKTAAFAIPICESIVWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL + PTRELA QV  E+  +     V V V  GG    ++   L+  +H
Sbjct: 71  ------NLPQALVLEPTRELAYQVKDEIFNVGRMKRVKVPVVFGGFPFDKQALTLKQKSH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DH     L  S++K V++DEAD MLD+GF DD++ IL   P+   +++FS
Sbjct: 125 IVVGTPGRVLDHCETGTLKCSNVKYVIIDEADLMLDMGFLDDVKRILSYLPENITIMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L   +    V V +         I+     V   D+    + +L  +   N
Sbjct: 185 ATMGEALYALTDEFMNSPVEVKLEDGTETVDSIEQLGCFVTEEDKYELFLRMLYKNNPTN 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC TR  V      L +       L G + Q++R + +   R G  R  IATDVAAR
Sbjct: 245 AMIFCGTREMVEVLYYKLKKEKVWCGMLHGLIDQKQRIHTIDDFRTGGFRYLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D  D+  VI+ +L  + E  +HR GRTGR G+ G ++  I +  ++    + +     
Sbjct: 305 GVDFDDITHVINYDLPMSKETYVHRIGRTGRNGKSGKAISFIREEEKKMLSLIEKFTGTP 364

Query: 367 VVWEPAPSVEAIRE 380
           +     PS E +RE
Sbjct: 365 IEIVTPPSEEEVRE 378


>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
 gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
          Length = 497

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 235/467 (50%), Gaps = 14/467 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+ +   + I +A+++ G+   + +Q+  +   ++ KD++  AQTG+GKT AFG+ + 
Sbjct: 9   ETFKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPIL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +            P A+ ++PTRELA+Q   E+  L     +      GG  + R+ R
Sbjct: 69  QRIDTSKP------GPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFR 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+V TPGRL DH++ K +++S+++  VLDE DEM+D+GF DDI  I+ ++PK+
Sbjct: 123 ALKKKTNIIVATPGRLMDHMKRKTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKE 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA ++  +   V I +       I+   + +    + +A+  +L
Sbjct: 183 RQTLFFSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+      T+ L +  +    L G+LSQQ+R + ++  ++G     +
Sbjct: 243 DMQSPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE  +HR GRTGRAG+ G++   +      +   +
Sbjct: 303 ATDVAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQLREI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKIA 417
            R     +     PS+  + + + +  ++         G E   +  + LL   D   + 
Sbjct: 363 ERVIRRRIKRRAVPSLSEVIKGNERTAIETLRNTAQSGGLEHYIETAEELLNNIDSVSLV 422

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +  +++    L    +ITPV +   +  FR +    K     R N K
Sbjct: 423 SAAIKL----LTKQPDITPVKITEEKPMFRRNRGKGKGNFRHRRNGK 465


>gi|315452663|ref|YP_004072933.1| ATP-dependent RNA helicase [Helicobacter felis ATCC 49179]
 gi|315131715|emb|CBY82343.1| ATP-dependent RNA helicase,DEAD box helicase family protein
           [Helicobacter felis ATCC 49179]
          Length = 469

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 136/458 (29%), Positives = 231/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I ++++E G+V  + +QE  +   L+ +DV+  AQTG+GKT AF L +   L  + 
Sbjct: 25  LHPRILKSIAEAGFVQPSPIQEKAIPVILQGRDVIAQAQTGTGKTAAFALPIIHNLKND- 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL I PTRELA+Q+  E+  L   +        GG S+ ++   L+    
Sbjct: 84  ------RSVEALIITPTRELAMQISDEIFRLGKSSRTRTICIYGGQSIRKQCELLEKRPQ 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ K L   + K VVLDE+DEMLD+GF DDIE I D  P   ++L+FS
Sbjct: 138 VMIATPGRLLDHLKNKRLKHFNPKVVVLDESDEMLDMGFLDDIEEIFDYLPNDAQILLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA    +D   ++IA  N  ++DI  R  ++   +R+ AI+ +L       
Sbjct: 198 ATMPPPIRDLANKILQDPASIHIAPANITNADISQRFYVINEHERNEAIMRLLDKENHTK 257

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F   +  V    + L E  ++   L G++ Q+ R  +++  +  RA V +ATDVA+R
Sbjct: 258 SIIFMRMKREVDELHRFLVERGYKTTPLHGDMEQRARQESIKAFKSKRADVLVATDVASR 317

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V +  L  N E+ +HR GRTGRAG+KG+++ ++     +  +R+ +E + +
Sbjct: 318 GLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGIAITLVTPLEYKELQRMQKEIDST 377

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P    + E    R L        +  +   + + L+ + +P ++    L +   
Sbjct: 378 IELYEIP---DMNEDRLVRSLSKV----EVDEEVVSLYERLMEQFEPAQLTLKLLSLQFK 430

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                +E       S    FR      K     R + +
Sbjct: 431 SQKISKEDFLSPPKSDHKTFRKRPTHSKSRHTPRQSRQ 468


>gi|308184052|ref|YP_003928185.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
 gi|308059972|gb|ADO01868.1| ATP-dependent RNA helicase [Helicobacter pylori SJM180]
          Length = 492

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 239/470 (50%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G       K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KPSNKKTHPHERARSFKKGHYREKGSK 481


>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 18RS21]
 gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 528

 Score =  224 bits (569), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 240/451 (53%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTI------QALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVD--VLLAKHDP 413
                  +   +PA + EA + +     +RI +D    + +   +K   D   L  ++ P
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  PE +  V +   + 
Sbjct: 415 EELALYVLSLT---VQDPESLPEVEITREKP 442


>gi|296332826|ref|ZP_06875286.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673172|ref|YP_003864844.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150106|gb|EFG90995.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411416|gb|ADM36535.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 494

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 133/454 (29%), Positives = 222/454 (48%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L   +  E
Sbjct: 9   NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   
Sbjct: 69  SPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+F
Sbjct: 123 HIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     +
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPE 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAA
Sbjct: 243 LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + +    
Sbjct: 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR 362

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     P+++   E   Q  ++       ++           LL  HD   + A  +++
Sbjct: 363 KMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKM 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                    + TPV L           +  +   
Sbjct: 423 A----TKEPDNTPVRLTDEAPMVSKRYKNQRSSK 452


>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
          Length = 528

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 240/451 (53%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTI------QALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVD--VLLAKHDP 413
                  +   +PA + EA + +     +RI +D    + +   +K   D   L  ++ P
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  PE +  V +   + 
Sbjct: 415 EELALYVLSLT---VQDPESLPEVEITREKP 442


>gi|154688021|ref|YP_001423182.1| DbpA [Bacillus amyloliquefaciens FZB42]
 gi|154353872|gb|ABS75951.1| DbpA [Bacillus amyloliquefaciens FZB42]
          Length = 479

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 138/528 (26%), Positives = 235/528 (44%), Gaps = 67/528 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    I   I  AL+   Y   T VQ  ++   L++KD++V +QTGSGKT AFG+ +
Sbjct: 1   MNEFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 E ++      P AL + PTRELA Q+  ++  +     +      G  S  +++
Sbjct: 61  CELAEWEENK------PQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+  +H+V GTPGR+ DHI    L +  L  VV+DEADEML++GF + +E I+   PK
Sbjct: 115 TELKQKSHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+   +  L++ Y KD   + + +E     DI++        D+ + + ++
Sbjct: 175 NRVTMLFSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+FC T+  V + T  L    +    + G + Q++R + +   + G  R  
Sbjct: 235 LITENPDSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ ++ LVI+ ++    E+ +HR+GRTGRAG +G ++  +     R    
Sbjct: 295 IATDVAARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAITFVTPFEARFLND 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +    APS +   ER A                EK      +     E++  
Sbjct: 355 IETYIGFRIQKREAPSEKETAERKA-------------AFAEKLNARPDVKTDKSEQLNK 401

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             ++++  G                                              G K+K
Sbjct: 402 DIMKLYFNG----------------------------------------------GKKKK 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
             A   +  + +  G++   IG I +  + ++VE+       +   +K
Sbjct: 416 LRAVDFVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLDIMK 463


>gi|16077525|ref|NP_388339.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|1881268|dbj|BAA19295.1| ydbR [Bacillus subtilis]
 gi|2632758|emb|CAB12265.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 511

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 222/454 (48%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L   +  E
Sbjct: 26  NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPE 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   
Sbjct: 86  SPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+F
Sbjct: 140 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     +
Sbjct: 200 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPE 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAA
Sbjct: 260 LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + +    
Sbjct: 320 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR 379

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     P+++   E   Q  ++       ++           LL  HD   + A  +++
Sbjct: 380 KMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKM 439

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                    + TPV L           +  +   
Sbjct: 440 A----TKEPDDTPVRLTDEAPMVSKRYKNQRSSK 469


>gi|332637958|ref|ZP_08416821.1| putative ATP-dependent RNA helicase [Weissella cibaria KACC 11862]
          Length = 524

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 148/454 (32%), Positives = 235/454 (51%), Gaps = 14/454 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q +  A+ + GYV  T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  ++++        AL ++PTRELA+Q   EL  L     V V    GG  + R+  
Sbjct: 61  NMIDTDSNQV------QALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +GAHIVVGTPGRL DHI    +N+S++K +VLDEADEML++GF +DIE IL + P +
Sbjct: 115 GLSHGAHIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQ 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + IA++      ++   V V   ++ + + +IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K AI+F  T+  V   T+ L    F    + G+L+QQ+RS  L+  ++G  ++ +
Sbjct: 235 DVQQPKLAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ V + ++  + E+ +HR GRTGRAG  G SV  I        + +
Sbjct: 295 ATDVAARGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIA 417
            +     ++    P+ E                + +      + +++D L+ K+D + +A
Sbjct: 355 EKLTKKRMLPLKPPTREEALAGRMSVAADSVEAVIAATSGSVDSEVIDTLVEKYDAKTLA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
              L     G  A            R+R     R
Sbjct: 415 TALL-----GAVANVSEMDAEFTLSRERPLPRKR 443


>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 432

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 208/401 (51%), Gaps = 2/401 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   +    AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++     + +   + + +    
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSALKDIEKTIGK 366

Query: 366 SVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMV 404
           ++        E  AI    AQR   D    D+ +  ++   
Sbjct: 367 NIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWY 407


>gi|22536941|ref|NP_687792.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
          Length = 528

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 240/451 (53%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIHTEDNTI------QALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I +    + ++D   V V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVD--VLLAKHDP 413
                  +   +PA + EA + +     +RI +D    + +   +K   D   L  ++ P
Sbjct: 355 ENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  PE +  V +   + 
Sbjct: 415 EELALYVLSLT---VQDPESLPEVEITREKP 442


>gi|52082502|ref|YP_081293.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52787898|ref|YP_093727.1| DeaD [Bacillus licheniformis ATCC 14580]
 gi|52005713|gb|AAU25655.1| ATP-dependent RNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52350400|gb|AAU43034.1| DeaD [Bacillus licheniformis ATCC 14580]
          Length = 481

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 150/536 (27%), Positives = 243/536 (45%), Gaps = 67/536 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL   GY   T+VQ  ++   L+++DV+V ++TGSGKT AFG+ L      E 
Sbjct: 11  LSGDITKALDHLGYKEPTAVQSEVIPAVLKKRDVVVKSRTGSGKTAAFGIPLCELTEWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  +L  +     +  A   G  S  R++ +L+   H
Sbjct: 71  NK------PQALVLTPTRELAAQVKEDLTNIGRYKRIKAAAVYGKSSFERQKTELKQKCH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVG PGR+ DHI    L +  LK +V+DEADEML++GF D +  I+   P++R  ++FS
Sbjct: 125 IVVGPPGRVLDHIEKGTLPLEKLKYLVIDEADEMLNMGFIDQVGAIIRHLPEERLTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+  Y KD +++ I +     +DI+++ ++V  +D  + +V++       +
Sbjct: 185 ATFPEDVEHLSLQYMKDPLKIEIKAGGTTTADIEHQLIIVNENDPFSLLVDLFIVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+  V+     L+   +    + G + Q++R   +   R G  R  IATDVAAR
Sbjct: 245 CIVFCRTQEQVNELQWRLSVLGYPCEKIHGGMPQEDRFAVMNRFRRGAFRYLIATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ EL  + E+ +HR+GRTGRAG +G ++ +     +R    +       
Sbjct: 305 GIDIENITHVINYELPLDQESYVHRTGRTGRAGSRGKAITLASAREKRMIADIEDYIGFH 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     PS                                       E+IA       + 
Sbjct: 365 IPIIEEPS--------------------------------------KEEIARAKAAFQKK 386

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
               PE                     K       N +    +  + G K+K  A   + 
Sbjct: 387 INRKPE--------------------LKQDKSESLNKEIMRLYF-NGGKKKKLRAVDFVG 425

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  G++ + IG I +Q   +FVE+      L+   +K    KG  LK     K
Sbjct: 426 TIAKIDGVSAEDIGIITIQEQGSFVEILNGKGPLVLDAMKNTTVKGKLLKVHKARK 481


>gi|224373572|ref|YP_002607944.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
 gi|223588451|gb|ACM92187.1| ATP-dependent RNA helicase DeaD [Nautilia profundicola AmH]
          Length = 467

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 14/447 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I + L E G+   + +QE  +   L+ KD++  AQTG+GKT AFGL + + L   
Sbjct: 7   NLKKEILKRLEEIGFEKPSPIQEKAIPVVLQGKDIVAQAQTGTGKTAAFGLPILNML--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL I PTRELA+QV  E+       G+  A   GG S  R+   ++N  
Sbjct: 64  ------EKGQKALIITPTRELAIQVSEEIFRFGKHLGIHTATVYGGSSYSRQINHIKNSE 117

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV      +     GK         VVLDEADEMLD+GF DDI+ I    P  R+ L+F
Sbjct: 118 VIVATPGRLIDLLSSGKIDIAPE--YVVLDEADEMLDMGFLDDIKEIFKYVPSNRQTLLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LAK   KD   + I  +   + +I     ++   +R++A++ ++ Y    
Sbjct: 176 SATMPKPILSLAKTILKDPEFIQITKKEVTNENIKEYFYVIDEHERNDALIRLIDYKQPN 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFC T+  V      L+   F    L G++ Q++R   ++  +  R  + +ATDVAA
Sbjct: 236 KAIVFCRTKKDVDTVADFLSGVGFDAKGLHGDMDQRKREEVIKGFKGNRIEILVATDVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+  V +  L  +PE+ +HR GRTGRAG++GM++ ++  +  R   ++ + + +
Sbjct: 296 RGLDVNDVTHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALSKIQKISKI 355

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +  +  P+++ ++  + Q+I++    ++       ++V+VL    D   IA  F  +  
Sbjct: 356 EL--KEVPTLQDVKNTEIQKIMEKISSIEPNTKS-IEIVEVLQNDFDLFTIATKFASMLF 412

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRA 452
                 +E    SL   +      + +
Sbjct: 413 EKDADGKERIGKSLKEAKRLLERSANS 439


>gi|313683287|ref|YP_004061025.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313156147|gb|ADR34825.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 526

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 239/485 (49%), Gaps = 20/485 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + I ++++  G+   + +Q+ ++   +  +DV+  A TG+GKT AFGL   +
Sbjct: 15  TFEAFGLRKEIMQSINFAGFKTPSPIQQMVIPVIMEGRDVVGQAHTGTGKTAAFGLPALN 74

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +            L I PTRELA QV  E+       GV      GG S +R+   
Sbjct: 75  KMHLKG-------GIETLIITPTRELANQVSDEIFKYGKHLGVRTVTIYGGSSYNRQMDL 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ GA +++ TPGRL D +    L       V+LDEADEMLD+GF DDI  I    P +R
Sbjct: 128 IERGAQVIIATPGRLLDMLSRNMLKGFTPSTVILDEADEMLDMGFLDDINEIFTYLPTER 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+    +    +I      ++DI  +  ++  S+RD+AI+ ++ 
Sbjct: 188 QTLLFSATMPAPIKQLAERILVNPFFASITKSETTNTDITQQYYVIEESERDDAIIRLMD 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              AK  +VFC T+  V R + VL+   +    L G++ Q++R + ++ ++     V IA
Sbjct: 248 SEDAKKTVVFCRTKKEVDRLSNVLSAAGYMAKGLHGDMEQRQRESVIKGLKTDAVDVLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+ + D+  V +  +  +PE+ +HR GRTGRAG+KG+++ ++     +  +R+ 
Sbjct: 308 TDVAARGLHIDDVTHVFNYHIPFDPESYVHRIGRTGRAGKKGVAITLVTPLEFKELQRIR 367

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +   ++     PS   ++E    R++++ +    +  +  K++D+L   +D E+IA   
Sbjct: 368 AKVGTTMEHAYIPSKLDVKEAQVSRLVRE-IEKQHVYDEAHKVLDLLKQDYDQEQIAYKL 426

Query: 421 LR--IHRAGLCAPEEITPVSLV-----SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           +   + R  +  P  I   +       S      D       G     N  G   +    
Sbjct: 427 ISVLMERNTVQGPNNIGIAAERLEKILSNLANRHDRGGQRSGGFNRNRNRSGGGGYR--- 483

Query: 474 GSKQK 478
           G+  +
Sbjct: 484 GNNDR 488


>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 432

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 208/401 (51%), Gaps = 2/401 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQNIAKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   +    AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QNKSDKSRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++     + +   + + +    
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSSLKDIEKTIGK 366

Query: 366 SVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMV 404
           ++        E  AI    AQR   D    D+ +  ++   
Sbjct: 367 NIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWY 407


>gi|149194827|ref|ZP_01871921.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
 gi|149134986|gb|EDM23468.1| DEAD/DEAH box helicase-like protein [Caminibacter mediatlanticus
           TB-2]
          Length = 460

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 225/449 (50%), Gaps = 15/449 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ + + I + L E G+   + +QE  +   L  KDV+  AQTG+GKT AFGL + S
Sbjct: 3   FKDFK-LKKEIIKRLEEIGFEKPSPIQEKAIPVILEGKDVVAQAQTGTGKTAAFGLPILS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +           AL I PTRELA+QV  E+       GV  A   GG S +R+ + 
Sbjct: 62  KIKKDEK---------ALIITPTRELAIQVSEEIFRFGKYLGVHTATVYGGSSYNRQIKH 112

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++N   I+      L     GK         V+LDEADEMLD+GF DDI+ I    P  R
Sbjct: 113 IENSQFIIATPGRLLDLLKSGKIDIAPK--YVILDEADEMLDMGFLDDIKEIFKFVPSNR 170

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LAK   K+   + I  +   + +I     ++   +R +A++ ++ 
Sbjct: 171 QTLLFSATMPEPIKNLAKTILKNPEFITITRKQVTNENIKEYFYVIDEFERKDALIRLID 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y     +IVFC T+  V    + L+   F    L G++ Q++R   ++  +  R  + +A
Sbjct: 231 YKNPTKSIVFCRTKKDVDDIAEFLSGAGFDAKGLHGDMDQRKREEVIRGFKSDRIEILVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ ++  V +  L  +PE+ +HR GRTGRAG++GM++ ++  +  R   R+ 
Sbjct: 291 TDVAARGLDVNNVSHVFNYHLPLDPESYVHRIGRTGRAGKEGMAISLVTPHEFRALNRIQ 350

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + +   ++ +  P++  +++++ Q+I+ D L          ++++ L  ++D   IA   
Sbjct: 351 KISK--IILKEIPTLADVKDKEIQKII-DKLSNIDPTPKSIEIIEELQNEYDLMTIAIKL 407

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
             +        ++    S+   +     +
Sbjct: 408 ASMLFDKESDGKDRIGKSIKEAKRLIERE 436


>gi|149181312|ref|ZP_01859810.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851037|gb|EDL65189.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 481

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 137/538 (25%), Positives = 247/538 (45%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL+   Y   T VQ  ++   L  +D++V AQTGSGKT AFG+ ++
Sbjct: 4   KSFADYHVSEEIQRALAVLKYETPTEVQNKVIPSALENQDLVVKAQTGSGKTAAFGIPVS 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +      P AL + PTRELAVQV  ++  +     +      G     +++ 
Sbjct: 64  DMIEWEEKK------PQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKD 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+VVGTPGR+ DHI  + L+++ +K +++DEADEML+ GF D++E I+   P  
Sbjct: 118 ELKQKTHVVVGTPGRVMDHIERETLDLNQIKYLIIDEADEMLNRGFIDEVEAIIKELPSN 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L   Y  + +++ I S       I++  + V   ++ + + +I 
Sbjct: 178 RVTMVFSATLPKDVENLCHKYMNNPLQIEIESTGVTADTIEHSLIEVREEEKISLLKDIT 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++FC T+ +V      L +  +    L G L Q++R + ++  + G  R  +
Sbjct: 238 VVENPDSCLIFCRTKENVDTVYSELEKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++ +      +  + +
Sbjct: 298 ATDVAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITLSTPYEGKFIKAI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R     +    APS   +    A               +EK     ++  +   +I   
Sbjct: 358 ERYIGFELPAVEAPSHSEVAAGKA-------------AFEEKLSGRRVVRNNKTARINQD 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +++H  G                                              G K+K 
Sbjct: 405 IMKLHFTG----------------------------------------------GKKKKI 418

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G++   IG I +   +++V++      L+ + ++    KG +LK 
Sbjct: 419 RAVDFVGTIAKIPGVSADDIGIITIHDQMSYVDILNGKGSLVLQAMEKATVKGKKLKV 476


>gi|23098064|ref|NP_691530.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776289|dbj|BAC12565.1| ATP-dependent RNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 495

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 221/466 (47%), Gaps = 11/466 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     I +AL + G+   T +Q   +   L   DV+  AQTG+GKT AFG+ L
Sbjct: 1   MTKFNELGVSAPIMKALEKMGFEEATPIQAETIPHALEGHDVIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +       +       L +APTRELA+QV  E+  L     V      GG  + R+ 
Sbjct: 61  INKIN------AKLRKVQGLIVAPTRELAIQVAEEINRLAKFKSVRALAIYGGQPMDRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G  IVV TPGRL DH+R K + I  +   VLDEADEML++GF DDI  IL   P+
Sbjct: 115 RALKDGPQIVVATPGRLLDHMRRKTIRIDQVHTAVLDEADEMLNMGFIDDIREILKGIPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  +A    K+   V + ++     +ID   + +    + + + N 
Sbjct: 175 ERQTLLFSATMPKEIRNIATTLMKEPKEVKVKAKEMTVENIDQYFIEIPEKYKFDTLNNH 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  + AI+F  T+  V    + L    ++   + G+L+Q +R + L+  + GR  V 
Sbjct: 235 LDINSPELAIIFARTKKRVDEVAEGLQARGYRSEGIHGDLTQGKRMSVLKKFKQGRVDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G ++  I          
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKMGEAISFITPREMAHLNL 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +     +     P+ +  R    Q  ++       +      +     LL ++D   +
Sbjct: 355 IEQTTKSKMKRMAPPTNQDARRGQQQVTIEKLKNAINEKDLKVYEDAAKELLDEYDSITV 414

Query: 417 A-AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
             A    + +     P  I+ V+ +S +          K    ++ 
Sbjct: 415 VSAAISMMTKERRDTPVRISSVAPISVKKAKNQKDNKTKGRSNNKR 460


>gi|162453584|ref|YP_001615951.1| hypothetical protein sce5308 [Sorangium cellulosum 'So ce 56']
 gi|161164166|emb|CAN95471.1| deaD3 [Sorangium cellulosum 'So ce 56']
          Length = 632

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 205/621 (33%), Positives = 290/621 (46%), Gaps = 83/621 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P  +  AL+ RG+ +LT VQ+A+L P+L  +D+ VS+QTGSGKTVA GLALA  L    
Sbjct: 10  LPAPLAGALARRGFTSLTPVQQAVLAPELAGRDLRVSSQTGSGKTVAIGLALAPRLERAL 69

Query: 63  ------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                  A +     A+AP A+ IAPTRELA Q+  EL WL +  G  VA   GG S   
Sbjct: 70  ADRAAAAAPDGAPRTAAAPAAVIIAPTRELAAQIAGELSWLLSPLGARVACVTGGTSFGA 129

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E R L+    ++ GTPGRL DH+    L+   + A+VLDEAD+MLDLGFRDD+E I+   
Sbjct: 130 EARSLRRDPLVIAGTPGRLLDHLDRGTLDPRGVLALVLDEADQMLDLGFRDDLEAIVGKM 189

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+  + SAT S  +  LA  +Q+DAV V        + DI + A LV  ++RD A+V
Sbjct: 190 PGDRQTHLVSATFSREVRALADRFQRDAVSVEGTRPGAANGDIAHVAHLVLPAERDAAVV 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+L     +  +VF  TR   +     L        ALSG+L Q+ER+  L   R G   
Sbjct: 250 NLLLLAPGERTLVFVRTREGAAELADKLTALGLPARALSGDLEQRERTRTLDAFRSGAIT 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARGID+P++  VIHA+   +PE   HRSGRTGRAGRKG SV ++    +  A
Sbjct: 310 TLVATDVAARGIDVPEVGRVIHADPPGDPEIFTHRSGRTGRAGRKGTSVLLVAPFAREHA 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---------------------- 394
            RL R A V   + PAPS + +     +R+  +   +                       
Sbjct: 370 LRLLRRARVEATFRPAPSPDDVLRAADERLAAELAAVRLEGAAAGDAAAGDAAVVDANVR 429

Query: 395 --------SIQGDEKKMVDVLLAKHDPEKIAAGFL-RIHRAGLCAPEEITPV-------- 437
                   + +   +++   LLA  D  ++ A  L R    G CAP+ +T V        
Sbjct: 430 GPREASGPAPEARHRQLAARLLADMDATELVAALLARAKHTGPCAPQPVTAVAPPRSEPP 489

Query: 438 ----------------------------------SLVSGRDRFRDDSRAFKVGGGSRDNF 463
                                             S     +       A + G G +   
Sbjct: 490 PSRARPPAPPWSGAPSRARPPAPPWSGAPSRARSSAPPWSEAPSRARPAARQGNGEQPPR 549

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                F ++ G +  A+ R L+ ++CR  G++ Q IGAIR+    + VEV++       R
Sbjct: 550 LPFVPFQVNWGERHGADPRRLLALVCRRGGVSSQQIGAIRIGSTASVVEVASPAAPEFAR 609

Query: 524 TVKLDKGIQLKYLGGEKPDFR 544
            V        +         R
Sbjct: 610 AVNQPDARDARIRIVRASSMR 630


>gi|221308280|ref|ZP_03590127.1| hypothetical protein Bsubs1_02593 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312602|ref|ZP_03594407.1| hypothetical protein BsubsN3_02569 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317526|ref|ZP_03598820.1| hypothetical protein BsubsJ_02533 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321802|ref|ZP_03603096.1| hypothetical protein BsubsS_02604 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314132|ref|YP_004206419.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|134039178|sp|P96614|CSHA_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshA
 gi|291482867|dbj|BAI83942.1| hypothetical protein BSNT_00786 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020406|gb|ADV95392.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 494

 Score =  223 bits (568), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 222/454 (48%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L   +  E
Sbjct: 9   NLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   
Sbjct: 69  SPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+F
Sbjct: 123 NIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L     +
Sbjct: 183 SATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPE 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAA
Sbjct: 243 LAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + +    
Sbjct: 303 RGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKR 362

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     P+++   E   Q  ++       ++           LL  HD   + A  +++
Sbjct: 363 KMDRMKEPTLDEALEGQQQVTVERLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKM 422

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                    + TPV L           +  +   
Sbjct: 423 A----TKEPDDTPVRLTDEAPMVSKRYKNQRSSK 452


>gi|89096784|ref|ZP_01169676.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
 gi|89088799|gb|EAR67908.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. NRRL B-14911]
          Length = 480

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 139/538 (25%), Positives = 242/538 (44%), Gaps = 69/538 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + I  AL    Y + T VQ  ++   + ++D++V AQTGSGKT +FG+ + 
Sbjct: 3   KSFADYHLSEEIQRALGVLKYESPTEVQSKVIPLAMEKQDLVVKAQTGSGKTASFGIPVC 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E        +P AL + PTRELAVQV  ++  +     +      G     +++ 
Sbjct: 63  DMVEWEE------KSPQALILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFTKQKE 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   H+VVGTPGR+ DHI  + L +  ++ +++DEADEML+ GF D++E I+   P  
Sbjct: 117 ELKQKTHVVVGTPGRVMDHIDRETLVLDRIQYLIIDEADEMLNRGFIDEVEAIIKELPSD 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+   +  L   Y KD V V I S       I++  + V   D+ + + +I 
Sbjct: 177 RVTMVFSATLPKDVEALCHEYMKDPVHVEIESTGVTAETIEHLLMEVKQEDKISLLKDIT 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++FC T+  V      L    +    L G L Q++R   ++  + G  R  +
Sbjct: 237 VTENPDSCLIFCRTKEHVDTVYTELDGAGYSSERLHGGLEQEDRFAVMEGFKMGNYRYLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++       ++  + +
Sbjct: 297 ATDVAARGIDIDNVSLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFATPFEEKFLKAI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R     +    APS + +    A               +EK     ++  +   +I   
Sbjct: 357 ERYIGFEIPVIEAPSQQDVAAGKA-------------AFEEKISGRRVVRNNKTARINQD 403

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +++H  G                                              G K+K 
Sbjct: 404 IMKLHFTG----------------------------------------------GKKKKI 417

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            A   +  + +  G+    IG I +   +++V++      L+ + ++    KG +LK 
Sbjct: 418 RAVDFVGTIAKIPGVTADDIGIITIHDQMSYVDILNGKGSLVLQAMENATVKGKKLKV 475


>gi|308061601|gb|ADO03489.1| ATP-dependent RNA helicase [Helicobacter pylori Cuz20]
          Length = 492

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 232/467 (49%), Gaps = 18/467 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSK 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
               GL   E     +      +  +     +    S    +     
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQREQARSFKKGQHQDRH 479


>gi|318040201|ref|ZP_07972157.1| superfamily II DNA/RNA helicase [Synechococcus sp. CB0101]
          Length = 537

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 139/461 (30%), Positives = 232/461 (50%), Gaps = 21/461 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +AL+  GY   + +Q+A +   L  +D++  AQTG+GKT AF L + + L  + 
Sbjct: 85  FAPELLDALTAIGYEEPSPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALPMLAALDGQQ 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV    +   A    +  +   GG     +   L+ G 
Sbjct: 145 ------RTPQVLVLTPTRELAIQVADAFKSYAANMPHLRVLPLYGGSDFRDQIVRLKRGV 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ DH+R   L++S L+++VLDEADEML +GF DD+E++L+  P +R++++F
Sbjct: 199 QIVVGTPGRVMDHMRQGTLDLSGLRSLVLDEADEMLRMGFIDDVEWVLEQLPSQRQVVLF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  ++  Y  D   V I ++    S I  R + V    +  A+  +L     +
Sbjct: 259 SATMPPEIRRISHKYLNDPAEVTIKTKGADSSRIRQRFITVNGPQKLEALTRVLESETKE 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A      + L    + V  L+G+++Q +R   ++ +++G   V +ATDVAA
Sbjct: 319 GVIIFARTKAITVTVAEALEAKGYDVAVLNGDVAQSQRERTIERLKNGTVDVLVATDVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LV++ ++  + E  +HR GRTGRAGR G ++  +    +R    L R    
Sbjct: 379 RGLDVDRITLVVNYDIPFDSEAYVHRVGRTGRAGRSGDAILFVTPRERRFLGGLERAVGR 438

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----------DPEK 415
            +     PS   I +    R+ Q     D +  + +     LL++            PE+
Sbjct: 439 PIEPMQIPSNATINQSRLDRLRQR--LSDGLTTEGRDEERALLSEIVQRVAQESGATPEQ 496

Query: 416 IAAGFLRI--HRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +A   L++      L    + + +   +GRD  RD SR  +
Sbjct: 497 LALAALQLVVGPQPLLVQGDESWIRQAAGRDGGRDGSRDGR 537


>gi|317012091|gb|ADU82699.1| ATP-dependent RNA helicase [Helicobacter pylori Lithuania75]
          Length = 491

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 230/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     +  +           + K       +FK
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPPSKKTQHEPAHSFK 470


>gi|108562675|ref|YP_626991.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|217031464|ref|ZP_03436969.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298736807|ref|YP_003729337.1| putative helicase [Helicobacter pylori B8]
 gi|107836448|gb|ABF84317.1| ATP-dependent RNA helicase [Helicobacter pylori HPAG1]
 gi|216946664|gb|EEC25260.1| hypothetical protein HPB128_21g22 [Helicobacter pylori B128]
 gi|298356001|emb|CBI66873.1| putative helicase [Helicobacter pylori B8]
          Length = 492

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 235/470 (50%), Gaps = 23/470 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR---- 422
           +     P+   I E    + L D    + I    +++ ++     +P ++    L     
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 423 -----IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +++  + A +     +      +     RA     G   +    +
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPSHKKTPQHERARSFKKGQHRDRHPKT 482


>gi|187779626|ref|ZP_02996099.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
 gi|187773251|gb|EDU37053.1| hypothetical protein CLOSPO_03222 [Clostridium sporogenes ATCC
           15579]
          Length = 481

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 132/408 (32%), Positives = 219/408 (53%), Gaps = 11/408 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  +   I ++L + GY N + VQ+ ++   L++KD++V ++TGSGKT AF + +  
Sbjct: 5   TFENYKLSDEILKSLRKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E         P  L + PTRELA+Q+  E+  +     +      G   +  ++R+
Sbjct: 65  KLELEEKD------PQVLVLTPTRELALQIKEEISNIALYKRLRCTAIFGKQPMSLQKRE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H+VVGTPGR  DHI  + LN+  +K  +LDEADEML++GF D +E ++   PK R
Sbjct: 119 LKQRVHLVVGTPGRTLDHIERENLNLKKIKYFILDEADEMLNMGFIDQVEAVIKRLPKDR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSATI   I  L K Y  +   +NI  EN     I+     V   ++ + +  I+ 
Sbjct: 179 VTMLFSATIPDKIENLCKRYMNNPENININPENITTKTINQCYYEVEGKNKFSLLQKIIY 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N+I+FC+TR  V    K + +  F  +AL G + Q++R   ++  + G+ +  + 
Sbjct: 239 KEVVDNSIIFCNTREKVDEILKYMKKEGFNAIALHGGMEQKDRLETMKKFKQGQFQFLVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  VI+ E+    E+ +HR GRTGRAG++G+++  I  N  R  + + 
Sbjct: 299 TDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVRFLKDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDA--QRILQDPLFLDSIQGDEKKMVDV 406
              +  +     PS+E + +     +  ++D L +  +Q D KK  D+
Sbjct: 359 DYIDKEISKREEPSLEEVNKGKKIFEENIKDRLKI-KVQKDNKKQKDI 405


>gi|308182422|ref|YP_003926549.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
 gi|308064607|gb|ADO06499.1| ATP-dependent RNA helicase [Helicobacter pylori PeCan4]
          Length = 492

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 241/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNTTNTDITQRFYVINEHERAEAIMHLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KTPNKKTHQHEQARSFKKGQHKDRHPK 481


>gi|207091782|ref|ZP_03239569.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 492

 Score =  223 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 236/470 (50%), Gaps = 23/470 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  +  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSDITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR---- 422
           +     P+   I E    + L D    + I    +++ ++     +P ++    L     
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 423 -----IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +++  + A +     +  +   +     RA     G   +    +
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKTSNKKTPQHERARSFKKGQHRDRHPKT 482


>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
 gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
           bacterium HTCC2181]
          Length = 427

 Score =  223 bits (567), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 197/388 (50%), Gaps = 7/388 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F N+   I +A+ E GY   T +Q   +   +  K VL SAQTG+GKT AF L +  
Sbjct: 3   FQTF-NLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       S    P  L ++PTRELA Q+   ++       +      GG+S   + R 
Sbjct: 62  KLTKNR---SEGRGPRVLIVSPTRELATQITDSIKKYSRYLRINSITITGGISYGLQNRM 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 I+V TPGRL D  + K +N   L+ ++LDEAD MLD+GF  DI  I +++ KK+
Sbjct: 119 FSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRMLDMGFVPDIRKIYNATSKKQ 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           +MLMFSAT  P I  +A+ +  + V ++I  +   H +I          S +   + + +
Sbjct: 179 QMLMFSATFDPPIQKIAQEFLTNPVTISIKPDVSGHKNIKQLIYFADNQSHKQQMLDHFI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      AI+F +T+    + +  L     +  AL G++SQ  R+  +   +    ++ +
Sbjct: 239 KNDEVTQAIIFTATKRMADQLSDQLYHSDIKTSALHGDMSQGSRTKTINRFKRNETKILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ ++  V + ++    E+ +HR GRTGRA  KG+++ ++    +    ++
Sbjct: 299 ATDLASRGIDVKNISHVFNYDMPRFAEDYIHRIGRTGRANNKGIAISLVSPTDREFLRKI 358

Query: 360 FREANVSVVWEPAPSVEA--IRERDAQR 385
            R  N+ +     P +EA  ++E  A +
Sbjct: 359 ERFTNLKIEIASIPGMEATILKEAKAPK 386


>gi|325684686|gb|EGD26840.1| cold-shock DEAD box protein A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 478

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 214/447 (47%), Gaps = 9/447 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   I +A+   G+   T +Q   +   L  +DV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELGLNDNILKAIKRSGFEEATPIQAQTIPLALAGQDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QKLDLDKQ----EQAIQAIVIEPTRELAIQTQEELFRLGRDENAKVQVVYGGADIGRQIR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+VGTPGRL DH++ K + +  +K VVLDEADEMLD+GF  DIE IL  +  +
Sbjct: 117 ALKKVPEILVGTPGRLLDHLKRKTIKLDGVKTVVLDEADEMLDMGFIQDIESILTYAENR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  L + +  D   V I ++      ID   V V  +++ + +  ++
Sbjct: 177 DQTLLFSATMPKPIQVLGEKFMHDPQVVKIQAKQLTADLIDQYFVRVRENEKFDTMCRLI 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+  V   T+ L    +    + G+L+Q  R   L+  ++G   + +
Sbjct: 237 DVENPDLAVVFGRTKRRVDELTRGLVARGYNAAGIHGDLTQARRMQVLKRFKEGELDILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +P++ +HR GR   AG+ GMSV  +  N       +
Sbjct: 297 ATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGR---AGKSGMSVTFVTPNEIGYMRTI 353

Query: 360 FREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                  +     P+  +A   +  Q +L+    L           + LL  +  E IAA
Sbjct: 354 EDLTKKKMSPLRPPTDAQAFAGQMKQAVLKVDDLLSGDLSKYDDAAEKLLENYSAEDIAA 413

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDR 445
             L+           ITP +  S R +
Sbjct: 414 ALLKELSNDSEVTVTITPENPRSYRGK 440


>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 480

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 145/481 (30%), Positives = 232/481 (48%), Gaps = 27/481 (5%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I FEN+         L   G+ + T +QE  +   L   D+L  +QTG+GKT A+ L 
Sbjct: 1   MTISFENLGLSDARVNKLQRLGFESPTEIQEKAIPLILESNDILGQSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +N           L + PTRELA QV   L+    +  + +    GG S+ R+
Sbjct: 61  ILEQIDTKNPNV------QTLILTPTRELAQQVAEALKDFSTERRLYILTVYGGQSIERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L +  L+  VLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRSLERGVQIVVGTPGRVIDLLERKKLVLDCLRWAVLDEADEMLSMGFIDDVKTILRKTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
           + R    FSAT+   I  L   + K  V V++  +    + ID     +     +  A+ 
Sbjct: 175 ETRNTACFSATMPREIRDLVNQFLKSPVTVSVERKQAAPTHIDQHLYYVPRGWSKRKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     ++AI+F  T+ + S  T  L E    V    G LSQ +R   +   RDG+ +
Sbjct: 235 PILEMEDPESAIIFVRTKQTASELTTRLQEIGHSVDEYHGNLSQSQRERLVYRFRDGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ +I    +R  
Sbjct: 295 LVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLIEPVDRRMV 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHD 412
            ++ R+    +     PS   +  +  +++  +    +S+ G+        V  L  ++D
Sbjct: 355 RQIERKLRQKLETCKIPSRSQVEAKRIEKLQNE--IKESLAGERMASFLPLVRELSDEYD 412

Query: 413 PEKIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDS--RAFKVGGGSRD 461
           P+ IAA  L++     C          PE   P  ++  + ++  ++  R      G+R 
Sbjct: 413 PQAIAAAALQMIYDQDCPEWMKTDWEVPESAVPKPVIKRKGKYNPNNSKRHGNSNRGNRK 472

Query: 462 N 462
            
Sbjct: 473 K 473


>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 506

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 239/488 (48%), Gaps = 13/488 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAE 65
           +   +  A+++ GY  +T +Q   +   L+ +DV+ +AQTG+GKT AF L L    L  E
Sbjct: 22  LAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLLQRMLKHE 81

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV + ++     T +  AV  GG+ +  +  +L+ G
Sbjct: 82  NSSTSPARHPVRALVLLPTRELADQVAQAIKDYAVHTNLRSAVVFGGMDMKPQTLELKKG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 142 VEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRITLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA +Y +D V + +A  N   S ++     V   D+ +A+  IL+  G 
Sbjct: 202 FSATFSSEIKRLASSYLQDPVTIEVARSNAAASTVEQHFYSVDADDKRHALHQILKSRGM 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A VF +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVA
Sbjct: 262 KQAFVFVNSKLGCARLARSLEHEGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  + ++  R    + +  N
Sbjct: 322 ARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGAAGLAVSFVAKSDIRLVADIEKLLN 381

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +  E     E + +   Q  + D   ++ +  Q D +       +  D          
Sbjct: 382 TKIELEAVEYDEDVPDIRKQGRINDGHRMYAEGAQNDSRHGAHRSGSLRD-----VAHEG 436

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS--KQKAE 480
            +      P       L + RD F D      V      +++ ++      G       +
Sbjct: 437 QYARPERPPRRDFTRPLSAPRDPFFDKPYEPAVVAAEAPSWEAAAT--RQGGRSASANIK 494

Query: 481 ARWLMPML 488
            +  +  L
Sbjct: 495 PKRRVAAL 502


>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
           Z-7303]
          Length = 431

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 218/435 (50%), Gaps = 11/435 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   N+ + I +A+ + GY   T +Q   +   ++ +DV+  AQTG+GKT AFG+  
Sbjct: 3   ISTFNELNLSRDIEKAIEDLGYEEPTPIQARSIPYIMQGRDVIGQAQTGTGKTAAFGIPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   + +         + + PTRELA QV  EL  L     + V    GG  + R+ 
Sbjct: 63  LEKVDRNSKKV------QTIVLCPTRELANQVADELNKLARYKKIKVLPIYGGQPIERQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  GA IV+GTPGR+ DH+    L++ ++K  VLDEADEMLD+GFR+DIE IL   P 
Sbjct: 117 KALNKGAQIVIGTPGRILDHMERHTLSLDNVKMTVLDEADEMLDMGFREDIELILSKLPD 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+  +FSAT+   I  + K YQ +   +    +      ++     V    +  A+  +
Sbjct: 177 KRQTTLFSATMPGPIMKMTKKYQDNPELIKTVHKKLTVPQVEQTYFEVKERSKPEALCRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             ++  K+++VFC+T+  V    + L    +    L G++ Q++R   +   ++G     
Sbjct: 237 TDFYNIKSSLVFCNTKKGVDNLVETLKTRGYLADGLHGDMKQKQRDKVMSNFKNGEIETL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++E+V + ++  + E+ +HR GRTGRAG++G +          + + 
Sbjct: 297 VATDVAARGIDVENIEVVFNYDVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKEIYKIKD 356

Query: 359 LFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + +     +     PS   VE  R     + +++ +    +      + ++L   +    
Sbjct: 357 IQKYTQTKIHSGRIPSQSDVEDFRANMLSQKVKETIDSGHLGKYVHWVENLLEEDYTSID 416

Query: 416 IAAGFLRIHRAGLCA 430
           +AAG +++  +    
Sbjct: 417 VAAGLVKVMLSDEFK 431


>gi|29375434|ref|NP_814588.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|227520091|ref|ZP_03950140.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227554958|ref|ZP_03985005.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229546689|ref|ZP_04435414.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|229548784|ref|ZP_04437509.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|293383725|ref|ZP_06629632.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293388799|ref|ZP_06633292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307267925|ref|ZP_07549313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307271845|ref|ZP_07553113.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307275145|ref|ZP_07556297.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307286655|ref|ZP_07566741.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|307290778|ref|ZP_07570673.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|312901614|ref|ZP_07760885.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904406|ref|ZP_07763566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907060|ref|ZP_07766056.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312952884|ref|ZP_07771745.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|312978684|ref|ZP_07790411.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|29342894|gb|AAO80658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|227072435|gb|EEI10398.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX0104]
 gi|227175901|gb|EEI56873.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           HH22]
 gi|229306092|gb|EEN72088.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           ATCC 29200]
 gi|229308195|gb|EEN74182.1| DEAD box ATP-dependent RNA helicase SrmB [Enterococcus faecalis
           TX1322]
 gi|291078801|gb|EFE16165.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291081956|gb|EFE18919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306498159|gb|EFM67681.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|306502133|gb|EFM71417.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306508173|gb|EFM77291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306511351|gb|EFM80353.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306515566|gb|EFM84093.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310627045|gb|EFQ10328.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629187|gb|EFQ12470.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632233|gb|EFQ15516.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311288391|gb|EFQ66947.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311291302|gb|EFQ69858.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027034|gb|EFT38966.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315029211|gb|EFT41143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
 gi|315032370|gb|EFT44302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315034370|gb|EFT46302.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145185|gb|EFT89201.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315148006|gb|EFT92022.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315149607|gb|EFT93623.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153133|gb|EFT97149.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155152|gb|EFT99168.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315158764|gb|EFU02781.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315163093|gb|EFU07110.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315165079|gb|EFU09096.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315167890|gb|EFU11907.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315171750|gb|EFU15767.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174909|gb|EFU18926.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315574115|gb|EFU86306.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315577243|gb|EFU89434.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|315581764|gb|EFU93955.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
 gi|327534429|gb|AEA93263.1| ATP-dependent RNA helicase DeaD [Enterococcus faecalis OG1RF]
          Length = 536

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 221/443 (49%), Gaps = 10/443 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N
Sbjct: 29  LAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADN 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  H
Sbjct: 89  ------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPH 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FS
Sbjct: 143 IVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   + K    V I ++      ID   V     ++ + +  +L     + 
Sbjct: 203 ATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPEL 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAAR
Sbjct: 263 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +       
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKKR 382

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           +     P+ +   +      ++  +    ++      +  + LL K+    +AA  L+  
Sbjct: 383 MTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLESAEALLEKYSATDLAALLLKTV 442

Query: 423 IHRAGLCAPEEITPVSLVSGRDR 445
                   P +ITP   +    +
Sbjct: 443 AKDPADAVPVKITPERPLPSNKK 465


>gi|307278457|ref|ZP_07559532.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504963|gb|EFM74158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 536

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 221/443 (49%), Gaps = 10/443 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + + + A+N
Sbjct: 29  LAPELLSAVERAGFEEATPIQSETIPLALAGKDVIGQAQTGTGKTAAFGLPMLNKIDADN 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L IAPTRELA+Q   EL  L     + V    GG  + R+ R L++  H
Sbjct: 89  ------RVIQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADIGRQIRGLKDRPH 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI  + L +  ++ +VLDEADEML++GF +DIE I+   P++R+ L+FS
Sbjct: 143 IVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMGFLEDIEKIISQVPEQRQTLLFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  +   + K    V I ++      ID   V     ++ + +  +L     + 
Sbjct: 203 ATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYVRSKDFEKFDIMTRLLDVQTPEL 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+  V    + L    ++   + G+LSQQ+R + L+  ++G   + +ATDVAAR
Sbjct: 263 TIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRMSVLRSFKNGNLDILVATDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG+ GMSV  +  N       +       
Sbjct: 323 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMSVTFVTPNEMGYLHVIENLTKKR 382

Query: 367 VVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-- 422
           +     P+ +   +      ++  +    ++      +  + LL K+    +AA  L+  
Sbjct: 383 MTPLRPPTEKEAFKGQLSAAVETIESDIEENGLDKYLESAEALLEKYSATDLAALLLKTV 442

Query: 423 IHRAGLCAPEEITPVSLVSGRDR 445
                   P +ITP   +    +
Sbjct: 443 AKDPADAVPVKITPERPLPSNKK 465


>gi|307636940|gb|ADN79390.1| cold-shock DEAD-box protein A [Helicobacter pylori 908]
          Length = 491

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 230/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINKHERAEAIMRLLDTQAPEK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     +  +             K       +FK
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFK 470


>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
           Eklund 17B]
          Length = 432

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 205/401 (51%), Gaps = 2/401 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL+E GY N T +QE  +   L  KD L  AQTG+GKT AF + +   +   
Sbjct: 7   NIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVLQNIAQN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL +APTRELA+Q+          T +   V  GGVS   + R L  G 
Sbjct: 67  QKKSDKPRTIKALILAPTRELAIQIEENFTLYSKHTNIKNTVIFGGVSQKPQTRILGEGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D I  K +++S++K  VLDEAD M D+G   D++ I+   PK R+ L+F
Sbjct: 127 DILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMFDMGMVRDVKKIVAKLPKVRQNLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + +L  +  KD V+V +A  +     I      V   D+ + +V++L+    K
Sbjct: 187 SATMPSEVKSLVNSILKDPVKVEVAPVSSTIDTITQGVYFVTKKDKKSLLVHLLKDESIK 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +   K LA+   +  A+ G  SQ  R  AL   ++G+ RV +ATD+AA
Sbjct: 247 SLLVFSRTKYGANNIVKDLAKTGTESQAIHGNKSQNARQLALSNFKEGKIRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ +L   PE  +HR GRTGRAG  G+++     + +   + + +    
Sbjct: 307 RGIDVDGLSHVINYDLPDVPETYVHRIGRTGRAGNSGVAISFCDVDEKSALKDIEKTIGK 366

Query: 366 SVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMV 404
           ++        E  AI    AQR   D    D+ +  ++   
Sbjct: 367 NIPVMKNVEFERIAITREPAQRKEADKKTTDANKKPKRNWY 407


>gi|325995530|gb|ADZ50935.1| Cold-shock DEAD-box protein A [Helicobacter pylori 2018]
 gi|325997128|gb|ADZ49336.1| ATP dependent RNA helicase [Helicobacter pylori 2017]
          Length = 491

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 230/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     +  +             K       +FK
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFK 470


>gi|311071129|ref|YP_003976052.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310871646|gb|ADP35121.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 497

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 225/459 (49%), Gaps = 14/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + +A++  G+   T +Q   +   L+ KDV+  AQTG+GKT AFG+ L  
Sbjct: 4   TFQDFQLSSDLMKAINRLGFEEATPIQAETIPLGLQHKDVIGQAQTGTGKTAAFGIPLVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 64  KINPESPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + L ++++  VV+DEADEML++GF +DIE IL + P + 
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTLRLNNVNTVVMDEADEMLNMGFIEDIESILSNVPSEH 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L 
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLD 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF  T+  V   ++ L    +    + G+L+Q +R  AL+  + G   V +A
Sbjct: 238 IQSPELAIVFGRTKRRVDELSEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + 
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIE 357

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +     +  ++           LL  HD   + A
Sbjct: 358 QTTKRKMDRMKEPTLDEAIEGQQQVTVDRLRTIISENNLNFYMTAAAELLEDHDAVTVVA 417

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +++         + TPV L           R  +   
Sbjct: 418 AAIKMS----TKEPDDTPVRLTDEAPMVGKRHRNHRSSK 452


>gi|260063169|ref|YP_003196249.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
 gi|88783263|gb|EAR14435.1| ATP-dependent RNA helicase [Robiginitalea biformata HTCC2501]
          Length = 579

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 143/536 (26%), Positives = 249/536 (46%), Gaps = 25/536 (4%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
            EA+   G+V  T VQ   +   L  E D++  AQTG+GKT AFGL L     + + +  
Sbjct: 1   MEAVDALGFVQPTGVQLETIPLLLGPETDLVALAQTGTGKTAAFGLPLLEKTDSASRKS- 59

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 AL +APTREL +Q+  EL+       G+ +    GG S+ ++ + L+NG  I+V
Sbjct: 60  -----QALILAPTRELCLQITSELQAYAKFIKGLSIVAVYGGASIQQQAKALKNGGQIIV 114

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR+ D I  K  +IS +   VLDEADEML++GF +D+  IL  +PK +   +FSAT+
Sbjct: 115 ATPGRMKDMISRKLADISSIGYCVLDEADEMLNMGFYEDLVDILSHAPKDKSTWLFSATM 174

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             A+  +A+++      V + + N   + + +    VA  DR  A+  +   +    +++
Sbjct: 175 PNAVARIARDFMHQPAEVTVGTRNEAIASVQHEYYTVAGRDRYPALRRLADANPGLFSVI 234

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+    +  + L E  +   AL G+LSQQ+R   +   R  + ++ +ATDVAARGID
Sbjct: 235 FCRTKRDTQKVAEKLIEDGYNAGALHGDLSQQQRDLVMNAFRKRQLQLLVATDVAARGID 294

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + D+  VIH +L    E   HRSGRTGRAG+ G+S+ ++ ++ QRR   + +        
Sbjct: 295 VDDVTHVIHYQLPDETETYTHRSGRTGRAGKSGVSMVILTRSEQRRIRAIEKIIGRPFEQ 354

Query: 370 EPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           +  P    I E     +      + ++         ++ +    D + +    + +  + 
Sbjct: 355 KKLPDGMEICEIQLYHLANKIRSVEVNPSIEAYLPAIEDVFKGMDRDTLIRKMISVEFSR 414

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
                  T     +              G        G++ F +++G     +   L  +
Sbjct: 415 FYDFYSKTRDLNPAA-------------GAAESARDSGTTRFFINIGEMDGLDWMQLKDL 461

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQLKYLGGEKP 541
           L  ++G+ R  I  +  +   +F    +    L+  ++     +G +++      P
Sbjct: 462 LKAATGLGRDDIYKVETKDSFSFFNTDSSMAPLVMESIQGVTYEGREVRVEISSSP 517


>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 492

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 143/380 (37%), Positives = 211/380 (55%), Gaps = 4/380 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY  +T +QE  +   L+ KDV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  ST-LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L  EN   SPA  P+ AL + PTRELAVQV  +++     T +  AV  GG+ +  +
Sbjct: 63  QRMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA +Y +D V + +A  N   S ++     V   D+  A+  
Sbjct: 183 KQRITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRALHQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G K A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 ILKERGMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +  + QR   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRLVA 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +     +  EP    E 
Sbjct: 363 DIEKLIKTKIELEPIEFDED 382


>gi|261839104|gb|ACX98869.1| DEAD-box ATP dependent DNA helicase [Helicobacter pylori 52]
          Length = 492

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 241/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRTSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    ++I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEAIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KPSNKKTHQHEQARSFKKGQHKDRHPK 481


>gi|261837694|gb|ACX97460.1| ATP-dependent RNA helicase [Helicobacter pylori 51]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TTKIGLNQQEIDAIQNPKEKTP-KTPNKKTHPHEQARSFKKGQHRDRHPK 481


>gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 427

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 132/414 (31%), Positives = 207/414 (50%), Gaps = 10/414 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   
Sbjct: 62  KLYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I+V TPGRL D I    +++S L   VLDEAD MLD+GF  DI+ IL   P +R
Sbjct: 118 LRSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL +      A+ G  +Q  R  AL   ++   R  IA
Sbjct: 238 DTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQ 357

Query: 361 REANVSVV---WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +     +      P  + E I+ + + Q  ++     +      +   D    K
Sbjct: 358 KLIGKKIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRK 411


>gi|254778953|ref|YP_003057058.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
 gi|254000864|emb|CAX28796.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           pylori B38]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 240/469 (51%), Gaps = 25/469 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ----GLCAPE-------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
               GL   E       +   +   + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTLKTPNKKTPPHEPARSFKKGQHRDRHPK 481


>gi|217033461|ref|ZP_03438891.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
 gi|216944166|gb|EEC23594.1| hypothetical protein HP9810_1g75 [Helicobacter pylori 98-10]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 237/472 (50%), Gaps = 23/472 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFMRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDIGGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR---- 422
           +     P+   I E    + L D    + I    +++ ++     +P ++    L     
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 423 -----IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
                +++  + A +     +  +   +     +A     G   +    + +
Sbjct: 433 TTKIGLNQQEIDAIQNPKEKTPKTSNKKTHQHEQARSFKKGQHRDRHPKTNY 484


>gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
 gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
          Length = 471

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 219/469 (46%), Gaps = 13/469 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q   + L   G+   T +Q   +   L  +D++  AQTG+GKT AF L +   L    
Sbjct: 10  LSQTRVDCLEALGFTTPTQIQAEAIPHLLAGRDIIGQAQTGTGKTAAFSLPILEQLDPT- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL + PTRELAVQV   +    A   + V    GG S+ R+   L+ GA 
Sbjct: 69  -----VKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDRQISQLRRGAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D +    + +  L   VLDEADEML++GF  D+  IL+  P  R+   FS
Sbjct: 124 LIVGTPGRVLDLLSRGEIILDQLSWFVLDEADEMLNMGFIPDVRKILERVPGDRKTAFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGAK 245
           AT++P I  L+K +  D V V +       + I+  A  +  +   + ++  +      +
Sbjct: 184 ATMAPEIYKLSKQFLNDPVTVTVEQPKAAPTRINQVAYRIPRTWARSTVLQAVLELEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+F  TR   +  T+ L    +      G+LSQ +R   L   R  R R  +ATD+AA
Sbjct: 244 SAIIFVRTRREAATLTQQLQTAGYSADEYHGDLSQSQRERLLDRFRQRRIRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL  VI+ E   + E+ +HR GRTGRAG +G ++ ++    + +   + +    
Sbjct: 304 RGLHVDDLSHVINYEPPDSVESYVHRIGRTGRAGNEGTAISLVHALDRWKLHEIEKHIRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +   P P+  AI  R  +++ ++   +            V  L   +D + IAA  L++
Sbjct: 364 EIPTLPTPTRSAIEGRRLEKLTEELHSILTGERLASFLPTVSQLGEDYDTQTIAAAALQM 423

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
                 A       +L     + ++  R+ +      +  + S+   +S
Sbjct: 424 AFDRYPA----ITANLDDWSSKNKNGGRSSRKAKPVLNKRRSSNRSEIS 468


>gi|317180053|dbj|BAJ57839.1| ATP-dependent RNA helicase [Helicobacter pylori F32]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KPSNKKTHQHEQARSFKKGQHRDRHPK 481


>gi|229823669|ref|ZP_04449738.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
 gi|229786906|gb|EEP23020.1| hypothetical protein GCWU000282_00970 [Catonella morbi ATCC 51271]
          Length = 518

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 244/504 (48%), Gaps = 33/504 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q + ++L++ G+   T +Q+  +   L  +D++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTELNLIQPLLDSLADMGFEEPTPIQQQAVPVALEGQDLIGQAQTGTGKTAAFGLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L          SA   L +APTRELA+QV  EL  L       + V  GG S+ ++  
Sbjct: 61  NKLDKNQ------SAIQGLVVAPTRELAIQVQEELYRLGKYQRARIYVVYGGSSIGKQIE 114

Query: 120 DL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            + +N   IVVGTPGR+ D +R K L++ HLK +VLDEADEML++GF +D++ I+ ++P 
Sbjct: 115 WIKRNQPQIVVGTPGRILDLMRRKALSLKHLKTLVLDEADEMLNMGFIEDVKEIVATTPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I +LA  + K+   V I ++      I+   +     ++ +    +
Sbjct: 175 SRQTLLFSATMPPEIRSLADQFLKEPAHVKIEAKQMTADLIEQFFIKCRDDEKFDIFTRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVFC T+  V    + L+   +    + G++ QQ+R++ +   R G+  + 
Sbjct: 235 LDVQMPTQAIVFCRTKKRVDEVARGLSLRGYNAELIHGDIPQQKRTSVINAFRQGQVELL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++S +PE+ +HR GRTGRAG +GMS+  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDISQDPESYVHRIGRTGRAGNEGMSITFVTPAEMSYLRV 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDE-KKMVDVLLAKHDPEKI 416
           +       +     P+++  +    Q ++      L++   DE +    +LL  +    +
Sbjct: 355 IEDLTRKRMQPMKPPTLKEAQAGQVQSLIDQLNETLEAGDADEHRNTAKLLLNHYQANDL 414

Query: 417 AAGFL-RIHRAGLCAPEEITPVSLVSGRDR-----------------FRDDSRAFKVGGG 458
            A  L +I  +      +I+P   +    R                      R F    G
Sbjct: 415 VAAMLGQILSSNSQVEVQISPQKPLPNAHRKSGGYKTGKGGGNGRRGHHGKKRDFHKDRG 474

Query: 459 SRDNFKGSSWFSLSVGSKQKAEAR 482
            R +      F      K K   R
Sbjct: 475 DRQDQGHKERFD----RKDK-RPR 493


>gi|188527054|ref|YP_001909741.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|188143294|gb|ACD47711.1| ATP-dependent RNA helicase [Helicobacter pylori Shi470]
 gi|308063109|gb|ADO04996.1| ATP-dependent RNA helicase [Helicobacter pylori Sat464]
          Length = 492

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSK 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KPSNKKTHQHEQARSFKKGQHKDRHPK 481


>gi|319654684|ref|ZP_08008763.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317393600|gb|EFV74359.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 472

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 230/464 (49%), Gaps = 9/464 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L  KD++  AQTG+GKT AFG+ +   +    D          
Sbjct: 1   MGFEEATPIQAQTIPLSLENKDLIGQAQTGTGKTAAFGIPMIDKIDNTKDFI------QG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QV  EL  +       V    GG  ++R+ R L+N  HI+VGTPGR+ D
Sbjct: 55  IVIAPTRELAIQVSEELYKIGYGKRTKVLSIYGGQDINRQIRALKNKPHIIVGTPGRILD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K + + H+   +LDEADEML++GF DDIE IL   P++R+ L+FSAT+   I  +A
Sbjct: 115 HINRKTMRLDHVHTAILDEADEMLNMGFIDDIEAILAQIPEERQTLLFSATMPAPIRRMA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + K+   V + ++    S I+   + V   ++ + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMKEPQIVRVKAKEMTVSSIEQYYIEVHEKNKFDVLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    +    + G+LSQ +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELAEALNLRGYMAEGIHGDLSQAKRISVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG+ G+++  I    +     + R     +    AP+++ 
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKTGVAMTFINPREKSYLHVVERTTKRKMERMDAPTLDE 354

Query: 378 IRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH-RAGLCAPEEI 434
             E   + +++  +    ++     K+  D LLA+ D   +    L++  +     P ++
Sbjct: 355 ALEGQQKAVMEKIMQTIEENNLESYKEAADELLAQKDASTVVQAVLKMLTKEPDTTPVKL 414

Query: 435 TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           T    +  +   + + R+     G          +    G   K
Sbjct: 415 TEEKPLPSKRDRKPNDRSRGGYNGKGRQGGQKGSYKSRQGHTGK 458


>gi|322384200|ref|ZP_08057910.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321151092|gb|EFX44409.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 486

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 234/471 (49%), Gaps = 18/471 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L+  D++  AQTG+GKT AFG+ L + +    D+       +A
Sbjct: 1   MGFEEATPIQAKTIPLALQGHDLIGQAQTGTGKTAAFGVPLINKIDTAADKI------VA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA+QV  E+  L    G+      GG  + ++ R L+    I++GTPGRL D
Sbjct: 55  LVMCPTRELAIQVAEEISKLGRFKGIRSLPIYGGQDIVKQIRALKKKPQIIIGTPGRLLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  K + +  ++ VVLDEADEMLD+GF DDI+ IL   P++R  ++FSAT+ P I  LA
Sbjct: 115 HINRKTIKLEGVETVVLDEADEMLDMGFMDDIQSILSQVPEERHTMLFSATMPPNIQKLA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   V++  +      I    + V    +  A+  +L     + AI+F  T+  V
Sbjct: 175 HQFLRNPQHVSVIPKQVSAPLIAQAYIEVHEKQKFEALSRLLDMEAPELAIIFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L +  +    L G+LSQ +R N ++  RDG   V +ATDVAARG+D+  +  VI
Sbjct: 235 DELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATDVAARGLDVSGVSHVI 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV-- 375
           + +L  +PE+ +HR GRTGRAG++G +   +          + +     +  +P PS+  
Sbjct: 295 NFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHLHFIEKVTRHKISRKPLPSLAE 354

Query: 376 --EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE- 432
             E  ++  A+RIL+  L       + K +   LL ++D   + A  L++          
Sbjct: 355 AMEGKQKMTAERILE--LMEKDNHQEFKGVAIQLLEQYDSVNLLAAALKLLTGEKKDVNI 412

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
           E+TP   +  + R  D   + +   G+     G   +  S   K     R 
Sbjct: 413 ELTPEEPLRAKKRRFDVRNSGRKPYGNDRRSGG---YRSS--RKDGYRDRD 458


>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 422

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 197/387 (50%), Gaps = 9/387 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++R        AL + PTRELA+Q+G   E     TG+   V  GGV    +  D
Sbjct: 62  KLYKTDNR----KGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDD 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D +    +N+  L   VLDEAD MLD+GF  DI  IL   P +R
Sbjct: 118 LKRGTQILIATPGRLQDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I TLA +   +  +V +   +     I      V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T+    +  ++L++      A+ G  SQ  R  AL   +    RV IA
Sbjct: 238 NTAIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G ++           + + 
Sbjct: 298 TDIAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELPYLKDIQ 357

Query: 361 REANVS---VVWEPAPSVEAIRERDAQ 384
           +    +   +   P  + E I  ++ +
Sbjct: 358 KLIGKTIPVIEHHPFITTEGINAQEVK 384


>gi|317013693|gb|ADU81129.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori Gambia94/24]
          Length = 491

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 230/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNADITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     +  +             K       +FK
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFK 470


>gi|313899722|ref|ZP_07833225.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
 gi|312955337|gb|EFR37002.1| ATP-dependent RNA helicase DbpA [Clostridium sp. HGF2]
          Length = 477

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 140/543 (25%), Positives = 240/543 (44%), Gaps = 71/543 (13%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE+  +   I EAL   GY +   VQEA++   L +KD+LV ++TGSGKT +F + +
Sbjct: 1   MK-FEDYKLDASICEALHTLGYQSPLPVQEAVIPLMLEKKDILVKSRTGSGKTASFAIPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ E        +P AL ++PTRELA+Q+  E + + A   +  A   G      + 
Sbjct: 60  IQDLIWEE------RSPQALVLSPTRELALQIKGEFDNIGAYKRIKTAAVFGKQPFRFQA 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +D++   H+V GTPGR+ DH+    L    ++ +++DEADEML++GF + ++ I    PK
Sbjct: 114 QDVKQRTHVVAGTPGRVLDHLEQGTLRTEKIRYIIIDEADEMLNMGFIETVQKIFFRLPK 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
              + MFSAT+   I  LA ++ K A  V I S+      + + A  +   ++  A++ +
Sbjct: 174 NASVCMFSATLPQEIQELAHDFLKQAEVVEIESQTSVSEQMHHYAYRLKEHEKPQALLKL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++ I+F  T+  V    ++L +    V  L G + Q++R   ++  R G+ R+ 
Sbjct: 234 LCRELPESCIIFAKTQEHVREICRMLYDKGISVDQLHGGMLQEDRLENMKDFRLGKLRIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATDVAARGID+ D+  +I+ ++ +  E  +HR GR+ R  R G ++  + Q    R + 
Sbjct: 294 TATDVAARGIDIQDVTHIINYDMPNKKETYIHRIGRSARLDRSGTAISFVSQYDDFRLQE 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L      ++ +  +  +EA+                                 D E +  
Sbjct: 354 LEEYLGNALEFHDSSELEAVIA-------------------------------DAETL-- 380

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                          I            R D     +GGG                    
Sbjct: 381 -----------RKLGIPKSQKEEKGKELRKDMMKLYLGGGKTKK---------------- 413

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYL 536
                ++  +C   G+    IG I+VQ   ++V++       + R ++    KG +LK  
Sbjct: 414 IRPGDIVGAICEIEGVCGDDIGVIQVQDHQSYVDILHGKGLQVLRALRQKTIKGKKLKVE 473

Query: 537 GGE 539
             +
Sbjct: 474 RAK 476


>gi|260866964|ref|YP_003233366.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|257763320|dbj|BAI34815.1| RNA helicase RhlE [Escherichia coli O111:H- str. 11128]
 gi|323175585|gb|EFZ61180.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1180]
          Length = 454

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G   V +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDICVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|193069347|ref|ZP_03050302.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
 gi|192957300|gb|EDV87748.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E110019]
          Length = 454

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARCNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|317008898|gb|ADU79478.1| ATP-dependent RNA helicase [Helicobacter pylori India7]
          Length = 492

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P    I E    + L D    ++I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIP---IINENQIIKTLHDAKVSEAIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TTKIGLNQQEIDAIQNPKEKTP-KPSNKKTHQHEPARSFKKGQHRDRHPK 481


>gi|325104041|ref|YP_004273695.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972889|gb|ADY51873.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 451

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 138/455 (30%), Positives = 223/455 (49%), Gaps = 9/455 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ Q I +AL    Y   T +Q   +   L+ KD+L  AQTG+GKT AF + +
Sbjct: 1   MTSFETLNLIQPIQKALKALNYQTPTPIQAQAIPLILQRKDLLGCAQTGTGKTAAFAIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  +    +   AL + PTRELA+Q+G           +  AV  GGV+   + 
Sbjct: 61  LQLLDEDLKKNHQKNTIKALIVTPTRELAIQIGDSFSDYGKNLRLKHAVIFGGVNQKSQV 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  I+V TPGRL D +  K L++ H+   VLDEAD MLD+GF +D++ I+   P+
Sbjct: 121 DALQKGVDILVATPGRLLDLMHQKHLSLKHINLFVLDEADRMLDMGFINDVKKIIAVLPQ 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P I  L++   K  V+V +   +     I+     V  +++++ +++I
Sbjct: 181 HRQSLFFSATMPPVIQKLSEEILKSPVKVEVTPVSSTADTINQTVFFVDKNNKNDLLLHI 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+     + +VF  T+    R  K LA+   +  A+ G  SQ  R  AL   +    RV 
Sbjct: 241 LKDQLLDSVLVFTRTKHGADRVVKTLAKQHIKSAAIHGNKSQNARQRALDDFKTKAIRVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L+ VI+ E+ + PE  +HR GR+GRAG +G+++     + +   + 
Sbjct: 301 VATDIAARGIDIDSLKYVINYEIPNIPETYVHRIGRSGRAGAEGIAISFCDVDEKPFLKD 360

Query: 359 LFREANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + +    SV      P P    + +  +++  + P          K         +D ++
Sbjct: 361 IEKIIGKSVPLGEDNPFPMENFVAKETSKKQGKKPQQQARKPEGNKPKAAHKGKDNDRKE 420

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
                   ++    + E  +  +  S R RFR  S
Sbjct: 421 ----NNWKNKERSFSKEGNSQSNWESKRRRFRKSS 451


>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60681162|ref|YP_211306.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253563072|ref|ZP_04840529.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
 gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
 gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251946848|gb|EES87130.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_2_5]
 gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
          Length = 427

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 132/414 (31%), Positives = 208/414 (50%), Gaps = 10/414 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   
Sbjct: 62  KLYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I+V TPGRL D I    +++S L   VLDEAD MLD+GF  DI+ IL   P +R
Sbjct: 118 LRSGIQILVATPGRLLDLISQGFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL +      A+ G  +Q  R  AL   ++   R  IA
Sbjct: 238 DTSIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQ 357

Query: 361 REANVSVV---WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +    ++      P  + E I+ + + Q  ++     +      +   D    K
Sbjct: 358 KLIGKNIPVVKDHPFVTTEGIKAQEEKQEEIKVKAKANKTYRGSRANGDFWRRK 411


>gi|317177063|dbj|BAJ54852.1| ATP-dependent RNA helicase [Helicobacter pylori F16]
          Length = 492

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KTSNKKTHQHEQARSFKKGQHKDRHPK 481


>gi|332673089|gb|AEE69906.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori 83]
          Length = 492

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KTSNKKTHQHEQTRSFKKGQHKDRHPK 481


>gi|149183244|ref|ZP_01861688.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
 gi|148849040|gb|EDL63246.1| ATP-dependent RNA helicase [Bacillus sp. SG-1]
          Length = 470

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 222/431 (51%), Gaps = 16/431 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ +   +  +N           
Sbjct: 1   MGFEEATPIQAGAIPLALEGKDVIGQAQTGTGKTTAFGIPMVEKIDVKNPNV------QG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L IAPTRELA+QV  EL  +     V V    GG  + R+ R ++   HI+VGTPGR+ D
Sbjct: 55  LIIAPTRELAIQVSEELYKIGQDKRVNVLAVYGGQDIQRQIRAMKKNPHIIVGTPGRMLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  + L + ++  +VLDEADEML++GF +DIE IL + P  R+ L+FSAT+   I  +A
Sbjct: 115 HINRRTLKLGNVSTLVLDEADEMLNMGFIEDIESILKNVPDNRQTLLFSATMPGPIRKIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            N+  D   V++ S+      I+   V     ++ + +  +L     + AI+F  T+  V
Sbjct: 175 NNFMTDPETVSVKSKEMTVPHIEQYFVKAHEKEKFDVLSRLLDVQSPELAIIFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    +    + G+LSQ +R   L+  ++GR  V +ATDVAARG+D+  +  V 
Sbjct: 235 DELARALTLRGYSAEGIHGDLSQAKRMTVLRQFKEGRIDVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG++GM++  +          + +    S+     P+   
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFVTPREMGYLRIVEKTTKKSMTQMKPPTSNE 354

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKHDPEKIAAGFLRIHRAGLCAPEE 433
             E   QR+  + L +++++ +E +    +    L  HD  +I A  LR+    +    +
Sbjct: 355 ALEGQ-QRLAMEKL-VETVKSNELQNYRGMAKELLEDHDSVEIVAAALRL----MTKEPD 408

Query: 434 ITPVSLVSGRD 444
            TPV +   R 
Sbjct: 409 DTPVQISEERP 419


>gi|317179357|dbj|BAJ57145.1| ATP-dependent RNA helicase [Helicobacter pylori F30]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 240/470 (51%), Gaps = 27/470 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ------------GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                        +  P+E TP    + +    + +R+FK G     + K
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTP-KTSNKKTHQHEQTRSFKKGQHKDRHPK 481


>gi|255008452|ref|ZP_05280578.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 427

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/414 (31%), Positives = 207/414 (50%), Gaps = 10/414 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + R        AL + PTRELA+Q+G   E     TG+  AV  GGV    +   
Sbjct: 62  KLYKTDHR----KGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I    ++++ L   VLDEAD MLD+GF  DI+ IL   P KR
Sbjct: 118 LRGGIQILVATPGRLLDLISQGFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +      +V +   +     I  +   V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  ++L +      A+ G  +Q  R  AL   ++   R  IA
Sbjct: 238 DASIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG +G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQ 357

Query: 361 REANVSVV---WEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +    ++      P  + E  + + + Q  ++     + +    +   D    K
Sbjct: 358 KLIGKNIPVVKEHPFVTAEGAKAQEEKQEEIKVKAKANKVYRGSRANGDFWRRK 411


>gi|253682634|ref|ZP_04863431.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253562346|gb|EES91798.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 476

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 218/420 (51%), Gaps = 11/420 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   I + +   GY + T VQE ++   L++KD++V +QTGSGKT +FG+ +  
Sbjct: 3   FKEF-NLSNEILKTIKMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L EN +      P  L + PTRELAVQ+  ++  +     +      G   V  ++  
Sbjct: 62  KVLLENKK------PQVLILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HIVVGTPGR  DHI    + +S ++ +++DEAD+ML++GF D +E ++   PK R
Sbjct: 116 LKQRVHIVVGTPGRTFDHIEKGNMELSDIRYLIIDEADKMLNMGFIDQVEDVIKRLPKDR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT+   I  L   Y  +  ++ I+ +N     I+     V    + + +  I+ 
Sbjct: 176 VTMLFSATLEEKIEKLCVKYMNNPEKIEISKKNITTDIIEQEYYEVESDRKFSLLNKIIY 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+FC+T+A V      +    F   AL G + Q++R   +Q  + GR    +A
Sbjct: 236 TERPDSCIIFCNTKAEVGSIAIKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  VI+ E+ S  E+ +HR GRTGRAG KG S+ ++ +   RR + + 
Sbjct: 296 TDVAARGIDIEEITHVINYEVPSEKESYVHRIGRTGRAGHKGKSITLVSEYENRRFKSIE 355

Query: 361 REANVSVVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                SV  +  PS E ++E       +  ++  L  D      KK+  + +     +KI
Sbjct: 356 EYIGYSVPKKEIPSEEEVQEGRKLFREKNKVRPKLKKDKSHEINKKITKIHINAGKKKKI 415


>gi|292493472|ref|YP_003528911.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582067|gb|ADE16524.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 504

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 126/444 (28%), Positives = 214/444 (48%), Gaps = 13/444 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF + + + L    
Sbjct: 15  ISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTAAFAIPILNRLALTR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                   P AL + PTRELA+QV    +          V    GG S+  + R L+ G 
Sbjct: 75  KE------PQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQLRQLKRGV 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R K L +  L  VVLDEADEML +GF +D+E+IL   P KR+  +F
Sbjct: 129 HVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMPAKRQTALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  ++  +A  +      + I  +      I+ R  LV+   + +A+  +L      
Sbjct: 189 SATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHKLDALTRMLEVEEYD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     K L+   +   AL+G+++Q +R   +  ++     + +ATDVAA
Sbjct: 249 ATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLDIIVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  +    +HR GRTGRAGR G +   +    +R    + +    
Sbjct: 309 RGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSAIKKVTGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKH--DPEKIAAGFL 421
            +   P PS + I +R  ++  Q  +     +   + + +V   + +    P  +AA   
Sbjct: 369 PLYEMPLPSHQKIIDRRIEQFKQQVMGTLEREDLAEFRHLVQQWVEQENLSPLDVAAAL- 427

Query: 422 RIHRAGLCAPEEITPVSLVSGRDR 445
             +      P    P++  +  D+
Sbjct: 428 -TYSMQRERPLVKPPLAESANHDK 450


>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
 gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
           TW07627]
          Length = 447

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 193/387 (49%), Gaps = 8/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA--IRERDAQR 385
           +       +EP PS++A  I+    QR
Sbjct: 368 IPRIAVPGYEPDPSIKAEPIQNGRQQR 394


>gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
          Length = 454

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + ++  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVSRRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|210134447|ref|YP_002300886.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
 gi|210132415|gb|ACJ07406.1| ATP-dependent RNA helicase [Helicobacter pylori P12]
          Length = 492

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 233/472 (49%), Gaps = 20/472 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMHLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    +      +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGTISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                     +      D  ++           + +    + F      K +
Sbjct: 433 TSKIGLNQQEI------DAIQNPKEKAPKPTHKKTHQHDQARFFKKGQHKDR 478


>gi|227878361|ref|ZP_03996316.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256849208|ref|ZP_05554641.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|293380351|ref|ZP_06626422.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
 gi|227862040|gb|EEJ69604.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus crispatus
           JV-V01]
 gi|256713984|gb|EEU28972.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           MV-1A-US]
 gi|290923034|gb|EFD99965.1| DEAD/DEAH box helicase [Lactobacillus crispatus 214-1]
          Length = 495

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 234/489 (47%), Gaps = 16/489 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QMIDKKE------KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      I+   V    S++ + +  +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+  +  Q  ++    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA------FKVGGGSRDNFKGSSWFSL 471
           A FL+ + A      +ITP   +  +   R              G  +      ++ +  
Sbjct: 415 AAFLK-NLAKDEVKVKITPEKPLPYKGDGRRRRGKGHGRSNNNHGRDNHRRRSNNNSYRQ 473

Query: 472 SVGSKQKAE 480
           +    ++  
Sbjct: 474 NGNRGKRGR 482


>gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
          Length = 453

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 454

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
 gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
          Length = 453

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|254561714|ref|YP_003068809.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254268992|emb|CAX24953.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 510

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 219/511 (42%), Gaps = 20/511 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  ++ R +P      L ++PTRELA Q+                V  GGV++ R+ 
Sbjct: 61  LHRLSLDSRR-APRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P 
Sbjct: 120 RAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA  Y  + V+V +         +D + +      +   + ++
Sbjct: 180 KRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    +  +VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV 
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKANVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE+ +HR GRT RAG +G ++       +     
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 359 LFREANVSVVWEPAP---------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + R     +     P           +     +A+R  + P      +            
Sbjct: 360 IERTTRQKIPVGGFPEGFVPPSRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGG 419

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +   E  A         G     +    +     D  R D R  +  G +R         
Sbjct: 420 EGRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGA 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
             S G +             RS G   ++IG
Sbjct: 480 RPSDGRRDG-RP-------ARSGGEGGRAIG 502


>gi|288556690|ref|YP_003428625.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288547850|gb|ADC51733.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 151/536 (28%), Positives = 248/536 (46%), Gaps = 67/536 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +AL    Y  LT+VQE ++   + EKDV+V AQTGSGKT A+ + L   ++ E 
Sbjct: 17  ISKEVQKALDLLNYKKLTNVQEKVVPVAIAEKDVIVKAQTGSGKTAAYAIPLCEKVIWEE 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA QV  E+  +     V  A   G  S  R++ +L+   H
Sbjct: 77  NK------PQALVLTPTRELAAQVKEEIINIGRFKRVKAAAVYGKQSYERQKIELKQKNH 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHI    L+ ++++ +V+DEAD+ML++GF D +E I+   P  R  ++FS
Sbjct: 131 IVTGTPGRVLDHIEKNSLDTTNIRFLVIDEADQMLNMGFIDQVEAIIARIPANRVTMLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+K +      + I S      +I++  + V   ++ + +  +L      +
Sbjct: 191 ATFPYGVEELSKRHMSLPEYIEINSTEASRPNINHAIIEVEADEKTDVLKKVLITENPDS 250

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+  V +  K L    + V  L G + Q++R + +   ++G  R  +AT VA R
Sbjct: 251 CIIFCQTQVEVDKLEKSLLRSQYPVEKLHGGMKQEDRFDVMDRFKEGAFRYLVATGVAGR 310

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D++LVI+ ++ +  EN +HR GRTGRAG+KG +  ++  +     + +       
Sbjct: 311 GIDVADIDLVINYDVPAEKENYVHRIGRTGRAGKKGKARTLVTPSEHGYIDDIEDFIGEQ 370

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +   P P  E +  + A +  Q  L                L ++  +K+    ++++  
Sbjct: 371 ITRVPRPGKEEV--KKAMKAFQIKLK-----------KKPQLKENKAKKLNQDIMKLYFN 417

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 418 G----------------------------------------------GKKKKLRAVDFVG 431

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            L   +GI    IG I +Q   T+VEV      L+   +K    KG QLK    +K
Sbjct: 432 TLSSINGIQSDDIGIITIQERETYVEVLNGKGPLVLEEMKHRTIKGKQLKVHPAKK 487


>gi|282890698|ref|ZP_06299218.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499291|gb|EFB41590.1| hypothetical protein pah_c026o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 538

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 231/470 (49%), Gaps = 11/470 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E  +   + +QE ++   L  +DV+  AQTG+GKT AFGL   + L    
Sbjct: 56  LNDSLLKAIAEAKFTQPSPIQEKVIPIILNGQDVVAQAQTGTGKTAAFGLPSLNRLD--- 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+    L I PTRELAVQV  EL  L    G+      GG S+ R+   ++ GA 
Sbjct: 113 ----KAAGVGLLVITPTRELAVQVSDELYRLGKYCGIRTIAVYGGQSIQRQIDGIERGAQ 168

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D ++ + L+      VVLDEADEML++GF +DI+ I    PK+R+ L+FS
Sbjct: 169 VVVATPGRLLDLLKSRRLSHFSPPIVVLDEADEMLNMGFLEDIQEIFTFLPKERQTLLFS 228

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK + ++   + I  +     +I     ++  S+RD+A+V +L       
Sbjct: 229 ATMPLPIQKLAKTFLREPEFIKITKKETASQNIQQICYVIHESERDDALVRLLDAQEEAK 288

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+FC T+  V R +  L    +    L G++ Q +R   +   R    ++  ATDVAAR
Sbjct: 289 SIIFCRTKKDVDRVSSFLTSRGYGARGLHGDMEQPQRQRVIDGFRQNEFQILAATDVAAR 348

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+++ D+  V +  L    E+ +HR GRTGRAG KG+++ ++        + +FRE   +
Sbjct: 349 GLNVLDVTHVYNYHLPYETESYVHRIGRTGRAGNKGIAITLLNPREVSGLKHIFREHGGN 408

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           + ++  P+++ ++ + A++ L+  +       +   ++  L  +   E+I+   L +   
Sbjct: 409 IEYQSIPTLQDVKRKFAEKFLKK-VQQRHFDQEAHALLTELQKEMSLEEISVNLLSLLLD 467

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                            +R    S   +  GG   +      F    G +
Sbjct: 468 YKKVEGPEHIGIHPQDIERSGGSSHQKRKRGGFSRDSNN--RFR-DRGRR 514


>gi|295425677|ref|ZP_06818364.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
 gi|295064693|gb|EFG55614.1| RNA helicase DeaD [Lactobacillus amylolyticus DSM 11664]
          Length = 493

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 134/445 (30%), Positives = 217/445 (48%), Gaps = 10/445 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + +A+   G+   T +Q   +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFLELGLNEDLLKAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QNLDKHEKTI------QAVIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++   +++S  K VVLDEADEMLD+GF  DIE IL    +
Sbjct: 115 SLKHHVPAILVGTPGRLLDHLKRGTIDLSKTKTVVLDEADEMLDMGFIQDIESILKYVGE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +  D   V I ++      ID   V    S++ + +  +
Sbjct: 175 RKQTLLFSATMPKPILQIGEKFMHDPEVVKIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKQFRAGKLEIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N     + 
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEISYMQT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ +       ++   +   L +      +   + LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKSEIEDLMNGDLSKYEDDANELLENYSALDLV 414

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVS 441
           A FL+ + +       +ITP   + 
Sbjct: 415 AAFLKNLSKDSTDVKVKITPEKPLP 439


>gi|312978402|ref|ZP_07790144.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
 gi|310894745|gb|EFQ43817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           crispatus CTV-05]
          Length = 495

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/489 (28%), Positives = 234/489 (47%), Gaps = 16/489 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QMIDKKE------KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      I+   V    S++ + +  +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+  +  Q  ++    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA------FKVGGGSRDNFKGSSWFSL 471
           A FL+ + A      +ITP   +  +   R              G  +      ++ +  
Sbjct: 415 AAFLK-NLAKDEVKVKITPEKPLPYKGDGRRRRGKGHGRSNNNHGRDNHRRRSNNNSYRQ 473

Query: 472 SVGSKQKAE 480
           +    ++  
Sbjct: 474 NGNRGKRGR 482


>gi|258542730|ref|YP_003188163.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633808|dbj|BAH99783.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636867|dbj|BAI02836.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639920|dbj|BAI05882.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642976|dbj|BAI08931.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646031|dbj|BAI11979.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649084|dbj|BAI15025.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652071|dbj|BAI18005.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655128|dbj|BAI21055.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 636

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 220/481 (45%), Gaps = 19/481 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + I  A+S+ GY + T +QE  +   L  +DV+  AQTG+GKT +F L +  
Sbjct: 156 TFADLELSEPILRAISDMGYTHPTPIQEQAIPAILMARDVMGVAQTGTGKTASFTLPMLE 215

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +D  + A  P +L + PTRELA+QV            +  A+ IGG S+  ++  
Sbjct: 216 IL---SDSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEV 272

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D     GL ++H   +V+DEAD MLD+GF  DIE I+   P  R
Sbjct: 273 LNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNR 332

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++P I  LA  +      + +A ++   + I    V+V    +   +  +L+
Sbjct: 333 QTLLFSATMAPTIRKLADAFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLK 392

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NAIVFC+ +  V   TK L +H F   AL G+L Q  R + L+  ++   +V + 
Sbjct: 393 DPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVC 452

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + +L  + E+ +HR GRTGRAGR+G +  +     +  AE + 
Sbjct: 453 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIE 512

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +     +       V+ +   D +R              E++       +  PE      
Sbjct: 513 KLTGKEIPRMALDGVKQLEWSDEKRPPAGRTRKPRTPQRERENAVPTPREQQPEA----- 567

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                     P++         R+            GG    F       + +  +    
Sbjct: 568 ---------KPQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRSSVR 618

Query: 481 A 481
            
Sbjct: 619 P 619


>gi|218530745|ref|YP_002421561.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218523048|gb|ACK83633.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 510

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 219/511 (42%), Gaps = 20/511 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  ++ R +P      L ++PTRELA Q+                V  GGV++ R+ 
Sbjct: 61  LHRLSLDSRR-APRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P 
Sbjct: 120 RAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA  Y  + V+V +         +D + +      +   + ++
Sbjct: 180 KRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    +  +VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV 
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE+ +HR GRT RAG +G ++       +     
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 359 LFREANVSVVWEPAP---------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + R     +     P           +     +A+R  + P      +            
Sbjct: 360 IERTTRQKIPVGGFPEGFVPPSRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGG 419

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +   E  A         G     +    +     D  R D R  +  G +R         
Sbjct: 420 EGRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGA 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
             S G +             RS G   ++IG
Sbjct: 480 RPSDGRRDG-RP-------ARSGGEGGRAIG 502


>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
 gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|163851993|ref|YP_001640036.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|240139120|ref|YP_002963595.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|163663598|gb|ABY30965.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
 gi|240009092|gb|ACS40318.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 510

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 219/511 (42%), Gaps = 20/511 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  ++ R +P      L ++PTRELA Q+                V  GGV++ R+ 
Sbjct: 61  LHRLSLDSRR-APRRGCRVLVLSPTRELASQIADSFSDYGRHLPYTNTVVFGGVNITRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P 
Sbjct: 120 RAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA  Y  + V+V +         +D + +      +   + ++
Sbjct: 180 KRQSLFFSATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    +  +VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV 
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKASVVSAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE+ +HR GRT RAG +G ++       +     
Sbjct: 300 VATDIAARGIDVDGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRD 359

Query: 359 LFREANVSVVWEPAP---------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + R     +     P           +     +A+R  + P      +            
Sbjct: 360 IERTTRQKIPVGGFPEGFVPPTRQEAQDNAAEEARRPPRQPQGRPGQRQGRPGGGRGQGG 419

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +   E  A         G     +    +     D  R D R  +  G +R         
Sbjct: 420 EGRGEPRAHEARGGRPGGQPGHRQDQRAAGAPRPDGQRQDQRRPERAGEARPQGARPQGA 479

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
             S G +             RS G   ++IG
Sbjct: 480 RPSDGRRDG-RP-------ARSGGEGGRAIG 502


>gi|323938152|gb|EGB34412.1| DEAD/DEAH box helicase [Escherichia coli E1520]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSNDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|317010528|gb|ADU84275.1| ATP-dependent RNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 494

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 127/456 (27%), Positives = 227/456 (49%), Gaps = 14/456 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 29  LKESVLKSVYEAGFTSPSPIQEKAIPAILQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 89  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 142 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 201

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + 
Sbjct: 202 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMRLLDTQAPEK 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + L    ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 381

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 382 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 434

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                     +  +             K     + +
Sbjct: 435 TSKIGLNQQEIDAIQNPKEKTPKPSHKKTHKPEQSH 470


>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
 gi|156861394|gb|EDO54825.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
 gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
          Length = 425

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 133/419 (31%), Positives = 208/419 (49%), Gaps = 10/419 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++R     +  AL + PTRELA+Q+G         TG+  AV  GGV    +  +
Sbjct: 62  KLYKTDNR----KSIKALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDE 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +    +N+  L+  VLDEAD MLD+GF  DI  IL   P KR
Sbjct: 118 LKRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +      +V +   +     I      V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ ++F  T+    +  + L++   +  A+ G  SQ  R  AL   ++   RV IA
Sbjct: 238 NPAIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQ 357

Query: 361 REANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +    S+      P  + + ++ +  +   ++     + I    +   D    K    +
Sbjct: 358 KLIGKSIPVIKEHPFVTADGLKAQKIKTEEIKAKTKENKIYRGSRTNGDFWRRKKQTSQ 416


>gi|187733875|ref|YP_001881017.1| ATP-dependent RNA helicase RhlE [Shigella boydii CDC 3083-94]
 gi|187430867|gb|ACD10141.1| putative ATP-dependent RNA helicase RhlE [Shigella boydii CDC
           3083-94]
 gi|320175218|gb|EFW50327.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae CDC 74-1112]
 gi|320183285|gb|EFW58140.1| ATP-dependent RNA helicase RhlE [Shigella flexneri CDC 796-83]
 gi|332097530|gb|EGJ02510.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 3594-74]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKNLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|224418675|ref|ZP_03656681.1| ATP-dependent RNA helicase, DEAD-box family DEAD [Helicobacter
           canadensis MIT 98-5491]
 gi|253826788|ref|ZP_04869673.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313142197|ref|ZP_07804390.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510194|gb|EES88853.1| ATP-dependent RNA helicase DeaD [Helicobacter canadensis MIT
           98-5491]
 gi|313131228|gb|EFR48845.1| ATP-dependent RNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 505

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 11/464 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + E G+   + +Q+ ++   L   DV+  AQTG+GKT AF L L + L  + 
Sbjct: 16  LKSKVLKGIDEAGFKEPSPIQKEVIPVILDGLDVIAQAQTGTGKTAAFALPLINELRHDG 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L +APTREL +Q+G E+  L     V      GG  + R+   L+    
Sbjct: 76  -------SIEVLIVAPTRELVMQIGDEVFKLGKYNKVRTVSLFGGQPIRRQIELLEKKPQ 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL DH+R   L     + VVLDE+DEMLD+GF DDIE I       R+ L+FS
Sbjct: 129 IVIATPGRLLDHLRNGRLKDFDPRVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+    +   + +   +  + DI  R  ++   +R++AIV ++       
Sbjct: 189 ATMPTPIKHLAQKILHNPKLIKVTPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPSK 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F   +       + L    ++  AL G++ Q+ER  +++  +D    V +ATD+AAR
Sbjct: 249 AIIFTRMKKEADLLCERLVNRGYKAGALHGDMEQRERQKSIKAFKDSSINVLVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   R+       
Sbjct: 309 GLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKENTKAK 368

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P ++    +    +L++ L  + I  +  K  + + A  D  ++    L +   
Sbjct: 369 IELYEIPDLQDTINKKDSNLLENILKHE-ITDEALKFYEQIRANADITQLVCKLLSMV-- 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            L   + + P  +   ++      +  +         KGS    
Sbjct: 426 -LKENKIVGPNKIGLDKEDLNRFQKQLQSDEKKHSEKKGSRLSR 468


>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
          Length = 465

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 220/468 (47%), Gaps = 11/468 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +
Sbjct: 1   MTDFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    ++        AL + PTRELA Q+   ++       +   V  GGVS++ + 
Sbjct: 61  LEKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PK
Sbjct: 121 MKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  IT LA +   + + + +A +N     +D    LV    +   + ++
Sbjct: 181 KRQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F  T+   ++  + L     +  A+ G  SQ  R+ AL   +DG+ +  
Sbjct: 241 IGLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKAL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL    E+ +HR GRTGRA   G ++ ++  +       
Sbjct: 301 VATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLAD 360

Query: 359 LFREANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + R     +       ++P PS++A       +  ++    +   G  +  +     +H 
Sbjct: 361 IERLLKREIPRLALEGYDPDPSIKA---APLHKKPKNKARNNKEGGHGRADIRGKDNRHT 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           P    +   +    G     +  P       D  RD+   +       
Sbjct: 418 PRNKNSRNQKESETGEIKQNKSKPARRSRKHDDDRDNQNPWSKARKEF 465


>gi|157160272|ref|YP_001457590.1| ATP-dependent RNA helicase RhlE [Escherichia coli HS]
 gi|157065952|gb|ABV05207.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli HS]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIKVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|24112165|ref|NP_706675.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 301]
 gi|30062282|ref|NP_836453.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 2a str. 2457T]
 gi|110804797|ref|YP_688317.1| ATP-dependent RNA helicase RhlE [Shigella flexneri 5 str. 8401]
 gi|24051003|gb|AAN42382.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30040527|gb|AAP16259.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|110614345|gb|ABF03012.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281600121|gb|ADA73105.1| putative ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650305|gb|EFS14717.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri 2a str.
           2457T]
 gi|332759696|gb|EGJ89999.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           4343-70]
 gi|332760467|gb|EGJ90756.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri
           2747-71]
 gi|332763287|gb|EGJ93529.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-671]
 gi|332767959|gb|EGJ98145.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Shigella flexneri 2930-71]
 gi|333006587|gb|EGK26086.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri VA-6]
 gi|333021182|gb|EGK40438.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-304]
          Length = 406

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 195/387 (50%), Gaps = 8/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA--IRERDAQR 385
           +       +EP PS++A  I+    QR
Sbjct: 368 IPRIAIPGYEPDPSIKAEPIQNGRQQR 394


>gi|324116221|gb|EGC10143.1| DEAD/DEAH box helicase [Escherichia coli E1167]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|324018526|gb|EGB87745.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 117-3]
          Length = 442

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|324011108|gb|EGB80327.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 60-1]
          Length = 438

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|315619798|gb|EFV00317.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 3431]
          Length = 449

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 3   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 63  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 123 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 183 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 243 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 303 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 362

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 363 IPRIAIPGYEPDPSIKA 379


>gi|315287179|gb|EFU46591.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 110-3]
          Length = 439

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|309786547|ref|ZP_07681170.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
 gi|308925610|gb|EFP71094.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           1617]
          Length = 449

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 3   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 63  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 123 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 183 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 243 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 303 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 362

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 363 IPRIAIPGYEPDPSIKA 379


>gi|331656814|ref|ZP_08357776.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331682303|ref|ZP_08382922.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
 gi|331055062|gb|EGI27071.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA206]
 gi|331079934|gb|EGI51113.1| ATP-dependent RNA helicase RhlE [Escherichia coli H299]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|331651800|ref|ZP_08352819.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
 gi|331050078|gb|EGI22136.1| ATP-dependent RNA helicase RhlE [Escherichia coli M718]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|300947123|ref|ZP_07161337.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300453201|gb|EFK16821.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
          Length = 433

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|301020713|ref|ZP_07184781.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
 gi|300398524|gb|EFJ82062.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 69-1]
          Length = 452

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|300957744|ref|ZP_07169931.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
 gi|300315560|gb|EFJ65344.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 175-1]
          Length = 439

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|301024520|ref|ZP_07188196.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
 gi|299880373|gb|EFI88584.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 196-1]
          Length = 438

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|295692132|ref|YP_003600742.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
 gi|295030238|emb|CBL49717.1| ATP-dependent RNA helicase [Lactobacillus crispatus ST1]
          Length = 494

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 224/444 (50%), Gaps = 10/444 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QMIDKKE------KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      I+   V    S++ + +  +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPKIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+  +  Q  ++    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVS 441
           A FL+ + A      +ITP   + 
Sbjct: 415 AAFLK-NLAKDEVKVKITPEKPLP 437


>gi|281177933|dbj|BAI54263.1| putative ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAILGYEPDPSIKA 384


>gi|260854088|ref|YP_003227979.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|257752737|dbj|BAI24239.1| RNA helicase RhlE [Escherichia coli O26:H11 str. 11368]
 gi|323155682|gb|EFZ41853.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli EPECa14]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|170683710|ref|YP_001742900.1| ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
 gi|170521428|gb|ACB19606.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli SMS-3-5]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|117622979|ref|YP_851892.1| ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
 gi|115512103|gb|ABJ00178.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli APEC O1]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|91209829|ref|YP_539815.1| ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218557702|ref|YP_002390615.1| ATP-dependent RNA helicase RhlE [Escherichia coli S88]
 gi|218688583|ref|YP_002396795.1| ATP-dependent RNA helicase RhlE [Escherichia coli ED1a]
 gi|237707244|ref|ZP_04537725.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|91071403|gb|ABE06284.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli UTI89]
 gi|218364471|emb|CAR02153.1| RNA helicase [Escherichia coli S88]
 gi|218426147|emb|CAR06967.1| RNA helicase [Escherichia coli ED1a]
 gi|226898454|gb|EEH84713.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 3_2_53FAA]
 gi|294493052|gb|ADE91808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           IHE3034]
 gi|307627793|gb|ADN72097.1| ATP-dependent RNA helicase RhlE [Escherichia coli UM146]
 gi|323958086|gb|EGB53795.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|82776130|ref|YP_402477.1| ATP-dependent RNA helicase RhlE [Shigella dysenteriae Sd197]
 gi|81240278|gb|ABB60988.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|74311340|ref|YP_309759.1| ATP-dependent RNA helicase RhlE [Shigella sonnei Ss046]
 gi|73854817|gb|AAZ87524.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323165715|gb|EFZ51501.1| putative ATP-dependent RNA helicase rhlE [Shigella sonnei 53G]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|15800548|ref|NP_286560.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 EDL933]
 gi|15830129|ref|NP_308902.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           Sakai]
 gi|168752016|ref|ZP_02777038.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|168756582|ref|ZP_02781589.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|168764299|ref|ZP_02789306.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|168767298|ref|ZP_02792305.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|168777223|ref|ZP_02802230.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|168779341|ref|ZP_02804348.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|168787011|ref|ZP_02812018.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|168799929|ref|ZP_02824936.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|195936837|ref|ZP_03082219.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808862|ref|ZP_03251199.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208814983|ref|ZP_03256162.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208822342|ref|ZP_03262661.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209396359|ref|YP_002269466.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|217324654|ref|ZP_03440738.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254791991|ref|YP_003076828.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225444|ref|ZP_05939725.1| RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258587|ref|ZP_05951120.1| RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291281794|ref|YP_003498612.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|293414075|ref|ZP_06656724.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|12513789|gb|AAG55168.1|AE005260_7 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13360334|dbj|BAB34298.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767485|gb|EDU31329.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4196]
 gi|188014049|gb|EDU52171.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4113]
 gi|189002895|gb|EDU71881.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4076]
 gi|189356291|gb|EDU74710.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4401]
 gi|189363536|gb|EDU81955.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4486]
 gi|189365692|gb|EDU84108.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4501]
 gi|189373064|gb|EDU91480.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC869]
 gi|189377707|gb|EDU96123.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC508]
 gi|208728663|gb|EDZ78264.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4206]
 gi|208731631|gb|EDZ80319.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4045]
 gi|208737827|gb|EDZ85510.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4042]
 gi|209157759|gb|ACI35192.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. EC4115]
 gi|209775908|gb|ACI86266.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775910|gb|ACI86267.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775912|gb|ACI86268.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775914|gb|ACI86269.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|209775916|gb|ACI86270.1| putative ATP-dependent RNA helicase [Escherichia coli]
 gi|217320875|gb|EEC29299.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7
           str. TW14588]
 gi|254591391|gb|ACT70752.1| RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290761667|gb|ADD55628.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           CB9615]
 gi|291434133|gb|EFF07106.1| ATP-dependent RNA helicase RhlE [Escherichia coli B185]
 gi|320192728|gb|EFW67369.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           EC1212]
 gi|320637659|gb|EFX07451.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           G5101]
 gi|320642785|gb|EFX11986.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str.
           493-89]
 gi|320648241|gb|EFX16896.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H- str. H
           2687]
 gi|320654078|gb|EFX22146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659701|gb|EFX27257.1| ATP-dependent RNA helicase RhlE [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320664171|gb|EFX31322.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338317|gb|EGD62146.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1125]
 gi|326346295|gb|EGD70033.1| ATP-dependent RNA helicase RhlE [Escherichia coli O157:H7 str.
           1044]
          Length = 455

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|157155652|ref|YP_001461987.1| ATP-dependent RNA helicase RhlE [Escherichia coli E24377A]
 gi|193064450|ref|ZP_03045531.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194428200|ref|ZP_03060743.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|256021133|ref|ZP_05434998.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|260843040|ref|YP_003220818.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|293433058|ref|ZP_06661486.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300824257|ref|ZP_07104374.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|331676532|ref|ZP_08377228.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332282359|ref|ZP_08394772.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
 gi|157077682|gb|ABV17390.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Escherichia coli
           E24377A]
 gi|192928912|gb|EDV82525.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli E22]
 gi|194413760|gb|EDX30039.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B171]
 gi|257758187|dbj|BAI29684.1| RNA helicase RhlE [Escherichia coli O103:H2 str. 12009]
 gi|291323877|gb|EFE63299.1| ATP-dependent RNA helicase RhlE [Escherichia coli B088]
 gi|300523231|gb|EFK44300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 119-7]
 gi|320198986|gb|EFW73583.1| ATP-dependent RNA helicase RhlE [Escherichia coli EC4100B]
 gi|323159727|gb|EFZ45705.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli E128010]
 gi|323185047|gb|EFZ70413.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1357]
 gi|323947045|gb|EGB43058.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|331075221|gb|EGI46519.1| ATP-dependent RNA helicase RhlE [Escherichia coli H591]
 gi|332104711|gb|EGJ08057.1| ATP-dependent RNA helicase RhlE [Shigella sp. D9]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|16128765|ref|NP_415318.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107648|ref|AP_001428.1| RNA helicase [Escherichia coli str. K-12 substr. W3110]
 gi|170020847|ref|YP_001725801.1| ATP-dependent RNA helicase RhlE [Escherichia coli ATCC 8739]
 gi|170080456|ref|YP_001729776.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188494973|ref|ZP_03002243.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|191166178|ref|ZP_03028012.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194433132|ref|ZP_03065414.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194438467|ref|ZP_03070557.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209918043|ref|YP_002292127.1| ATP-dependent RNA helicase RhlE [Escherichia coli SE11]
 gi|218553381|ref|YP_002386294.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI1]
 gi|218694271|ref|YP_002401938.1| ATP-dependent RNA helicase RhlE [Escherichia coli 55989]
 gi|238900056|ref|YP_002925852.1| RNA helicase [Escherichia coli BW2952]
 gi|253774200|ref|YP_003037031.1| ATP-dependent RNA helicase RhlE [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160874|ref|YP_003043982.1| ATP-dependent RNA helicase RhlE [Escherichia coli B str. REL606]
 gi|256023607|ref|ZP_05437472.1| ATP-dependent RNA helicase RhlE [Escherichia sp. 4_1_40B]
 gi|297521312|ref|ZP_06939698.1| ATP-dependent RNA helicase RhlE [Escherichia coli OP50]
 gi|300816442|ref|ZP_07096664.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300907124|ref|ZP_07124790.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300920043|ref|ZP_07136502.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300922820|ref|ZP_07138906.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300929402|ref|ZP_07144871.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|301303551|ref|ZP_07209673.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|301327988|ref|ZP_07221153.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|307137421|ref|ZP_07496777.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|307313793|ref|ZP_07593410.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794255|ref|ZP_07688679.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|312970872|ref|ZP_07785051.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|331641310|ref|ZP_08342445.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|548730|sp|P25888|RHLE_ECOLI RecName: Full=ATP-dependent RNA helicase rhlE
 gi|560801|gb|AAA53653.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|1787016|gb|AAC73884.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4062355|dbj|BAA35457.1| RNA helicase [Escherichia coli str. K12 substr. W3110]
 gi|169755775|gb|ACA78474.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888291|gb|ACB01998.1| RNA helicase [Escherichia coli str. K-12 substr. DH10B]
 gi|188490172|gb|EDU65275.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 53638]
 gi|190903787|gb|EDV63502.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli B7A]
 gi|194418629|gb|EDX34716.1| putative ATP-dependent RNA helicase RhlE [Shigella dysenteriae
           1012]
 gi|194422691|gb|EDX38688.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 101-1]
 gi|209911302|dbj|BAG76376.1| putative ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218351003|emb|CAU96707.1| RNA helicase [Escherichia coli 55989]
 gi|218360149|emb|CAQ97698.1| RNA helicase [Escherichia coli IAI1]
 gi|238863492|gb|ACR65490.1| RNA helicase [Escherichia coli BW2952]
 gi|242376589|emb|CAQ31298.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|253325244|gb|ACT29846.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972775|gb|ACT38446.1| RNA helicase [Escherichia coli B str. REL606]
 gi|253976995|gb|ACT42665.1| RNA helicase [Escherichia coli BL21(DE3)]
 gi|260450056|gb|ACX40478.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|300401169|gb|EFJ84707.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 84-1]
 gi|300412990|gb|EFJ96300.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 115-1]
 gi|300420852|gb|EFK04163.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 182-1]
 gi|300462602|gb|EFK26095.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 187-1]
 gi|300531132|gb|EFK52194.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 107-1]
 gi|300841050|gb|EFK68810.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 124-1]
 gi|300845553|gb|EFK73313.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 78-1]
 gi|306906433|gb|EFN36947.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308122160|gb|EFO59422.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 145-7]
 gi|309701075|emb|CBJ00373.1| putative ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336633|gb|EFQ01800.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 1827-70]
 gi|315060033|gb|ADT74360.1| RNA helicase [Escherichia coli W]
 gi|315135447|dbj|BAJ42606.1| ATP-dependent RNA helicase RhlE [Escherichia coli DH1]
 gi|315257782|gb|EFU37750.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 85-1]
 gi|320178508|gb|EFW53473.1| ATP-dependent RNA helicase RhlE [Shigella boydii ATCC 9905]
 gi|323172087|gb|EFZ57726.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli LT-68]
 gi|323379408|gb|ADX51676.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323942670|gb|EGB38835.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323963044|gb|EGB58615.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323971962|gb|EGB67183.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038108|gb|EGI10328.1| ATP-dependent RNA helicase RhlE [Escherichia coli H736]
 gi|332091029|gb|EGI96119.1| putative ATP-dependent RNA helicase rhlE [Shigella dysenteriae
           155-74]
 gi|332342129|gb|AEE55463.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMNK88]
          Length = 454

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|26246770|ref|NP_752810.1| ATP-dependent RNA helicase RhlE [Escherichia coli CFT073]
 gi|110641001|ref|YP_668729.1| ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|191174652|ref|ZP_03036132.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|227884241|ref|ZP_04002046.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300939831|ref|ZP_07154469.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|300992077|ref|ZP_07179779.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300993271|ref|ZP_07180318.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|301051284|ref|ZP_07198110.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|306812801|ref|ZP_07446994.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|331646014|ref|ZP_08347117.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
 gi|26107169|gb|AAN79353.1|AE016757_257 Putative ATP-dependent RNA helicase rhlE [Escherichia coli CFT073]
 gi|110342593|gb|ABG68830.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli 536]
 gi|190905071|gb|EDV64730.1| putative ATP-dependent RNA helicase RhlE [Escherichia coli F11]
 gi|222032528|emb|CAP75267.1| ATP-dependent RNA helicase rhlE [Escherichia coli LF82]
 gi|227838993|gb|EEJ49459.1| ATP-dependent RNA helicase RhlE [Escherichia coli 83972]
 gi|300297043|gb|EFJ53428.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 185-1]
 gi|300305406|gb|EFJ59926.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 200-1]
 gi|300406679|gb|EFJ90217.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 45-1]
 gi|300455363|gb|EFK18856.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 21-1]
 gi|305853564|gb|EFM54003.1| ATP-dependent RNA helicase RhlE [Escherichia coli NC101]
 gi|307552642|gb|ADN45417.1| ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|312945315|gb|ADR26142.1| ATP-dependent RNA helicase RhlE [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315292604|gb|EFU51956.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 153-1]
 gi|320196708|gb|EFW71331.1| ATP-dependent RNA helicase RhlE [Escherichia coli WV_060327]
 gi|324009618|gb|EGB78837.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 57-2]
 gi|330910540|gb|EGH39050.1| ATP-dependent RNA helicase RhlE [Escherichia coli AA86]
 gi|331044766|gb|EGI16893.1| ATP-dependent RNA helicase RhlE [Escherichia coli M605]
          Length = 453

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|317470864|ref|ZP_07930245.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316901691|gb|EFV23624.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 478

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 149/536 (27%), Positives = 241/536 (44%), Gaps = 69/536 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EAL+  GY   T++Q+ ++ P L  K+++  A TGSGKT AF + +   +  E 
Sbjct: 10  LSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +AP AL + P RELAVQV +E+  +  K  + V    GG  + ++ R L+  +H
Sbjct: 70  ------NAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL   P   R+ +FS
Sbjct: 124 IVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEVKQILSLVPADCRISLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  +  +AV V   +   Q S I  +    +   + +  ++IL     ++
Sbjct: 184 ATLKPEIRELADGFIPEAVLVMQEAGEEQASAITEKLYFASQERKYDTFLDILMDENPQS 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC TR   +   + L         L G++ Q+ER   +   R G  R  IATDVAAR
Sbjct: 244 CMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQRERLKTVDAFRRGGFRFLIATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID  ++  V++ +  +  E  +HR GRTGR G  G +V ++ +N QR  +++       
Sbjct: 304 GIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTENDQRMLKQVETYLGRE 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P +                      GDEK+                 F +  R 
Sbjct: 364 LPVTEPPVI----------------------GDEKER---------------AFWKFQR- 385

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                  I         +   +      +GGG                 K K  A  ++ 
Sbjct: 386 -------IKAERKPEKGEALNEGITRLSIGGG----------------RKSKMRAGDIVG 422

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR--TVKLDKGIQLKYLGGEK 540
            +C   G+    IG + ++  +++VE+     + +      K  KG   K     K
Sbjct: 423 TICSIEGLEASDIGIVDIRDSISYVEILNRKGNQVLDYLQTKPMKGKVRKVRKAGK 478


>gi|256844404|ref|ZP_05549890.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613482|gb|EEU18685.1| superfamily II DNA and RNA helicase [Lactobacillus crispatus
           125-2-CHN]
          Length = 494

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 224/444 (50%), Gaps = 10/444 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QMIDKKE------KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      I+   V    S++ + +  +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+  +  Q  ++    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVS 441
           A FL+ + A      +ITP   + 
Sbjct: 415 AAFLK-NLAKDEVKVKITPEKPLP 437


>gi|262047224|ref|ZP_06020182.1| helicase [Lactobacillus crispatus MV-3A-US]
 gi|260572469|gb|EEX29031.1| helicase [Lactobacillus crispatus MV-3A-US]
          Length = 494

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 224/444 (50%), Gaps = 10/444 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QMIDKKE------KAIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++ K +N+  +KAVVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRKTINLDQVKAVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +      V I ++      I+   V    S++ + +  +
Sbjct: 175 RQQTLLFSATMPKPILRIGEKFMDHPEIVRIKAKELTADLIEQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R + L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAEIHGDLSQARRMSVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+  +  Q  ++    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALHGQLKQAKIEIEDLMNGDLGKYTQGASELLDNYSALDLV 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVS 441
           A FL+ + A      +ITP   + 
Sbjct: 415 AAFLK-NLAKDEVKVKITPEKPLP 437


>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 465

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 220/468 (47%), Gaps = 11/468 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +
Sbjct: 1   MTDFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    ++        AL + PTRELA Q+   ++       +   V  GGVS++ + 
Sbjct: 61  LEKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRYLPIRSLVVFGGVSINPQM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PK
Sbjct: 121 MKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  IT LA +   + + + +A +N     +D    LV    +   + ++
Sbjct: 181 KRQNLLFSATFSKEITGLANSLLNNPISIAVAPKNSAAESVDQYVHLVDKKRKTELLSHL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F  T+   ++  + L     +  A+ G  SQ  R+ AL   +DG+ +  
Sbjct: 241 IGLENWPQVLIFTRTKHGANKLAEHLNLDGIKSAAIHGNKSQGARTRALADFKDGKLKAL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL    E+ +HR GRTGRA   G ++ ++  +       
Sbjct: 301 VATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLAD 360

Query: 359 LFREANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + R     +       ++P PS++A       +  ++    +   G  +  +     +H 
Sbjct: 361 IERLLKREIPRLALEGYDPDPSIKA---APLHKKPKNKARNNKEGGHGRADMRGKDNRHT 417

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           P    +   +    G     +  P       D  RD+   +       
Sbjct: 418 PRNKNSRNQKESETGEIKQNKSKPARRSRKHDDDRDNQNPWSKARKEF 465


>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 488

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 136/379 (35%), Positives = 214/379 (56%), Gaps = 4/379 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   I  A+ + GY+N T +Q  ++ P L  KDV+ SAQTG+GKT  F L L  
Sbjct: 6   TFEQLDLSSEILRAVIDEGYINPTPIQAQVIPPILAGKDVMASAQTGTGKTAGFTLPLLH 65

Query: 61  TLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L    +   SPA  P+ AL +APTRELA+Q+   +        +   V  GGV++  + 
Sbjct: 66  HLQAHASSSTSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQI 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+NG  I+V TPGRL D +  K +N S  + +VLDEAD MLD+GF  DI+ ++   P 
Sbjct: 126 TELRNGVEILVATPGRLLDLVEHKAVNFSKTEILVLDEADRMLDMGFLPDIKKVMALLPS 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT S  I  LA    K  VR+ +A++N  +  I +    +    +   ++++
Sbjct: 186 QRQSLMFSATFSDEIRKLADGLLKHPVRIEVAAQNTINESISHVVHRIKPESKFALLLHL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++    K A+VF  T+   S+  ++L+ H    +A+ G+ +QQ+R+ AL   + G  ++ 
Sbjct: 246 VKQQDLKQALVFVKTKHGASQLAQMLSHHKILALAIHGDKNQQQRTQALSEFKHGDVQIL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  L  V++ EL  NPE+ +HR GRTGRAG KG ++ ++ ++       
Sbjct: 306 VATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHETELLTS 365

Query: 359 LFREANVSVVWEPAPSVEA 377
           + +  N  +  E     +A
Sbjct: 366 IEKLLNTKLEIEQIAGFDA 384


>gi|333009786|gb|EGK29235.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-272]
 gi|333020451|gb|EGK39714.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-227]
          Length = 454

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 425

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 208/419 (49%), Gaps = 10/419 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++R     +  AL + PTRELA+Q+G         TG+  AV  GGV    +  +
Sbjct: 62  KLYKTDNR----KSIKALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDE 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +    +N+  L+  VLDEAD MLD+GF  DI  IL   P KR
Sbjct: 118 LKRGVQILVATPGRLQDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +      +V +   +     I      V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  + L++   +  A+ G  SQ  R  AL   ++   RV IA
Sbjct: 238 NPAIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQ 357

Query: 361 REANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +    S+      P  + + ++ +  +   ++     + I    +   D    K    +
Sbjct: 358 KLIGKSIPVIKEHPFVTADGLKAQKIKTEEIKAKTKENKIYRGSRTNGDFWRRKKQTSQ 416


>gi|302670646|ref|YP_003830606.1| RNA helicase DEAD/DEAH box family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302395119|gb|ADL34024.1| RNA helicase DEAD/DEAH box family [Butyrivibrio proteoclasticus
           B316]
          Length = 711

 Score =  221 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 145/507 (28%), Positives = 242/507 (47%), Gaps = 39/507 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             + + I  A+SE G+  ++ +Q+A +   ++ KD++  AQTG+GKT AFG+ L   +  
Sbjct: 64  SGLDERIIRAVSEMGFEYMSPIQKAAIPVMIQGKDIIGQAQTGTGKTAAFGIPLLHQVDP 123

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQN 123
            N          A+ + PTRELA+Q   ++        G+ V    GG  + R+ + L N
Sbjct: 124 AN------KHLQAVVLCPTRELAMQAADDIRDFAKYMFGIKVLAVYGGQDISRQIKALSN 177

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGR+ DH+R   + +  +K +VLDEADEMLD+GFR+DIE IL   P +R+  
Sbjct: 178 GVQIVVGTPGRVMDHMRRHTMKMKDVKVLVLDEADEMLDMGFREDIETILQGMPMERQTA 237

Query: 184 MFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +FSAT+  AI        + DA  + +  +    + I+     V    +++ +V ++ Y+
Sbjct: 238 LFSATMPEAILKITKTYQKSDAEYIKMTPKEITVAAIEQAYYRVPQKLKEDVLVRLMDYY 297

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +++FC+T+  V +  + L    +    L G+LSQ +R   + + R+GR  + IATD
Sbjct: 298 NPARSLIFCNTKRMVDQLAESLKGKGYLADGLHGDLSQNQRDTVMNLFRNGRINILIATD 357

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+  +E V + ++  + E  +HR GRTGRAGR GMS  ++      +   + + 
Sbjct: 358 VAARGIDVSGVEAVFNYDIPEDIEYYVHRIGRTGRAGRSGMSFTLVGGREMYKLREIEKV 417

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFL----DSIQGDEKKMVDVLLAKHDPEKIAA 418
            +  +     P  + I    +Q++  + + +    D     E     V   ++  E++AA
Sbjct: 418 CHTKIEERHVPKAKEITRVKSQKVFAEVIDIIENGDISSVLEFVNQKVEEGEYTAEQLAA 477

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD---------------------------RFRDDSR 451
           GF+++          +   S  + RD                              D  R
Sbjct: 478 GFMKLKMGADLEDLVLFEKSDRNRRDFKTRGERGRGERGRDGRRSDRDRDGKRGRGDRER 537

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             K  G    +  G S+   S G + K
Sbjct: 538 DGKKSGRDSRSRDGKSYDKDSRGRRGK 564


>gi|324114364|gb|EGC08333.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 453

 Score =  221 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|218508404|ref|ZP_03506282.1| ATP-dependent RNA helicase protein [Rhizobium etli Brasil 5]
          Length = 375

 Score =  221 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 248/375 (66%), Positives = 297/375 (79%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M  F  +   I +AL +RGY  LT VQ+++L+PDL   D LVSAQTGSGKTVAFGLALA 
Sbjct: 1   MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL  ++RF  A APLAL IAPTRELA+QV RELEWLY  TG V+A C+GG+ +  ERR 
Sbjct: 61  TLLEGSERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GAHIVVGTPGRLCDHIR + L++S LKA VLDEADEMLDLGFR+D+EFILDS+P +R
Sbjct: 121 LERGAHIVVGTPGRLCDHIRRRALDMSDLKAAVLDEADEMLDLGFREDLEFILDSAPDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R LMFSAT+  AI  LAK+YQ+DAVR++ A+E +QH DI+YRA++VA SDR+NAI+N+LR
Sbjct: 181 RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHVDIEYRALMVAPSDRENAIINVLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+ A NAIVFCSTRA+V+  T       F VVALSGEL+Q ERS+ALQ MRDGRARVCIA
Sbjct: 241 YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGIDLP L+LVIHA+L +NPE LLHRSGRTGRAGRKG+S  ++P N +R+AERL 
Sbjct: 301 TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL 360

Query: 361 REANVSVVWEPAPSV 375
             A +S  W   PS 
Sbjct: 361 ENAGISAAWARPPSA 375


>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
 gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
           HB-1]
          Length = 417

 Score =  221 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 145/420 (34%), Positives = 228/420 (54%), Gaps = 13/420 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  + + I ++L E G+V  T +Q+  +   L   D++  AQTG+GKT AFG+ L S +
Sbjct: 4   SFSQLDERIQKSLEEMGFVEPTPIQKEAIPLALEGHDLVGQAQTGTGKTAAFGIPLVSGI 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         A+ + PTRELA+QV  EL  +    GV      GGVS+ R+   L+
Sbjct: 64  SPRE------RGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAFPIYGGVSIERQINALK 117

Query: 123 NGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            G H I+VGTPGR+ D I    L +  ++  VLDEAD+MLD+GF +DIE IL  +PK+++
Sbjct: 118 RGRHQIIVGTPGRVKDLINRGVLRLDRVRYAVLDEADQMLDMGFIEDIEEILSKTPKEKQ 177

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  L   Y K   +     +      +  R +LV   D+  A+  +L+ 
Sbjct: 178 TLLFSATMPYEIRRLIGRYLKPDYKNVKVGKQLITPKVKQRIILVRSEDKIKALEKLLKE 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H   + IVF  T+   +   K L        A+ G+LSQ++R   ++  R+G+ +V +AT
Sbjct: 238 HEGVSTIVFVKTKRDAADIEKELQRRGINARAIHGDLSQRQREFVMRAFREGKVKVLVAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ D+ LVI+ EL  NPE+ +HR GRTGRAGR+G+++ ++ +  +RR  R+  
Sbjct: 298 DVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGLAISLVAEPEKRRLYRIKG 357

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              V        +V+ +++   +         +S+    K++   LL++  PE++ A  L
Sbjct: 358 LKGVRPERFRVNTVKELKKELLE------ADANSLPPYVKRLASELLSERSPEELVAVLL 411


>gi|323190923|gb|EFZ76190.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli RN587/1]
          Length = 453

 Score =  221 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSYMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|323485086|ref|ZP_08090439.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
 gi|323401642|gb|EGA93987.1| hypothetical protein HMPREF9474_02190 [Clostridium symbiosum
           WAL-14163]
          Length = 484

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 149/528 (28%), Positives = 229/528 (43%), Gaps = 68/528 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E+L   GY   T +Q+ ++   L  K+V+  A TGSGKT AF + +   ++ E 
Sbjct: 14  LSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEE 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL + PTREL VQV  E+  +  K  + V    GG  + ++ R L+  +H
Sbjct: 74  ------NLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHIR   L +  +  +V+DEAD MLD+GF D+++ ILD    + R+ +FS
Sbjct: 128 IVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I   A ++  D V +         + I          ++    +N+L     + 
Sbjct: 188 ATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYRENPQC 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC TR  V+   + L  H      + GEL Q+ER   +   R G  R  IATDVAAR
Sbjct: 248 CIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDL ++  VI+ +  +  E  +HR GRTGR GR G +V ++    +R  +        S
Sbjct: 308 GIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTEEYTGRS 367

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P      E++                                     F +  R 
Sbjct: 368 LPVLVCPESSGEEEKN-------------------------------------FWKSQR- 389

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                  +   +  S R     D     +GGG +   +                   ++ 
Sbjct: 390 -------LKTEAKPSKRAALNQDITRLSIGGGRKSKMR----------------PGDIVG 426

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
            LC   GI    IG I V+  LT+VE+       +  +++ DK I+ K
Sbjct: 427 TLCSIDGIEVSDIGIIDVRESLTYVEILNGKGSHVLESLQ-DKPIKGK 473


>gi|117924939|ref|YP_865556.1| DEAD/DEAH box helicase [Magnetococcus sp. MC-1]
 gi|117608695|gb|ABK44150.1| DEAD/DEAH box helicase domain protein [Magnetococcus sp. MC-1]
          Length = 439

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 189/370 (51%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + +  AL++ GY   T +Q   +   L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MSDFASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R +P +AP AL + PTRELA Q+G  +            V  GGV    + 
Sbjct: 61  LNKLSQIKGRPAP-NAPRALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  I+V TPGRL D +  + + +  ++  VLDEAD MLD+GF  DI  I+   P 
Sbjct: 120 RALSRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR  L+FSAT+   I  LA+    +  +V +  E+     I  + + V   ++ + + N+
Sbjct: 180 KRHTLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +   +  +VF  T+   +R  + L +H     A+ G  SQ  R  AL   R G+ +V 
Sbjct: 240 LEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ +L +  E+ +HR GRT RAGR G ++       +     
Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359

Query: 359 LFREANVSVV 368
           + +    +V 
Sbjct: 360 IEKTIRQTVP 369


>gi|227894493|ref|ZP_04012298.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
 gi|227863652|gb|EEJ71073.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus ultunensis
           DSM 16047]
          Length = 496

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 140/487 (28%), Positives = 229/487 (47%), Gaps = 15/487 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+  +        A  A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QTIDKKE------KAIQAIIIEPTRELAIQTQEELFRLGRDERAHVQVVYGGADIGRQIR 114

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +   I+VGTPGRL DH++   +++  +K VVLDEADEMLD+GF  DIE IL  +  
Sbjct: 115 SLKHHVPSILVGTPGRLLDHLKRGTIDLDKVKTVVLDEADEMLDMGFIQDIESILKYAKN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+   I  + + +  +   V I ++      ID   V    S++ + +  +
Sbjct: 175 RKQTLLFSATMPKPILRIGEKFMNNPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 235 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMTVLKRFREGKLDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGISVTFVTPNEIGYMRT 354

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+R +  Q   +    ++   G   +    LL  +    + 
Sbjct: 355 IEQLTKKKMSPLRPPTDDQALRGQLKQAKSEIEDLMNGDLGKYTQDASELLDNYSALDLV 414

Query: 418 AGFLRIHRAG------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           A FL+              PE+  P        R          G G+    + +  +  
Sbjct: 415 AAFLKNLSKDSTDVKVKITPEKPLPYKGDGRHHRGGRGRGRNNHGRGNYHRPRNNHNYRH 474

Query: 472 SVGSKQK 478
           +    ++
Sbjct: 475 NGNRGKR 481


>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
 gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
          Length = 487

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 140/461 (30%), Positives = 228/461 (49%), Gaps = 14/461 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     + L   G+   T +Q   +   L  +DV+  +QTG+GKT A+ L     +  E 
Sbjct: 10  LSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLEKIDLEQ 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELAVQV + L+       + V    GG S+ R+ R LQ G H
Sbjct: 70  KTV------QGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQKGVH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L+   L+  VLDEADEML +GF DD++ IL  SPK R+ + FS
Sbjct: 124 IVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTVCFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+ PAI  L +N+  D + + I         I     ++     +  A++ IL     +
Sbjct: 184 ATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMANPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+F  T+ + S  T  L E         G+L+Q +R   ++  +DG+ ++ +ATD+AA
Sbjct: 244 SAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L  VI+ +L  N E+ +HR GRTGRAG+ G ++ ++  + +R   ++ R    
Sbjct: 304 RGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERRVKQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFL 421
           S+     PS   +  +   R+  +    +++ G+       ++     ++DP+ IAA  L
Sbjct: 364 SLKVSTIPSRTEVEAQRVTRL--ETQVREALAGERMASFLPIVKRLGDEYDPQAIAAAVL 421

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           ++      +PE +     V   +      +  K GG S   
Sbjct: 422 QMMYDN-NSPEWLNEDWEVPEVNTKTGLPKPTKKGGRSGRR 461


>gi|218704175|ref|YP_002411694.1| ATP-dependent RNA helicase RhlE [Escherichia coli UMN026]
 gi|293404097|ref|ZP_06648091.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298379878|ref|ZP_06989483.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300898284|ref|ZP_07116635.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331662152|ref|ZP_08363075.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
 gi|218431272|emb|CAR12150.1| RNA helicase [Escherichia coli UMN026]
 gi|291428683|gb|EFF01708.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1412]
 gi|298279576|gb|EFI21084.1| ATP-dependent RNA helicase RhlE [Escherichia coli FVEC1302]
 gi|300358073|gb|EFJ73943.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 198-1]
 gi|331060574|gb|EGI32538.1| ATP-dependent RNA helicase RhlE [Escherichia coli TA143]
          Length = 454

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   +  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|77166069|ref|YP_344594.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|76884383|gb|ABA59064.1| ATP-dependent RNA helicase CsdA [Nitrosococcus oceani ATCC 19707]
          Length = 500

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 213/464 (45%), Gaps = 13/464 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF +     L    
Sbjct: 15  ISAPVLQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERLELSQ 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA+QV    +           +   GG S+  + R L+ GA
Sbjct: 75  KE------PQVLVLVPTRELAIQVAEAFQSYARYLEDFHVLPIYGGQSMGNQLRQLKRGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R K L ++ L  V+LDEADEML +GF +D+E+IL   P KR++ +F
Sbjct: 129 HVIVGTPGRIMDHLRRKSLILTKLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  ++  +A  + +    + I  E      I+ R  LV+   + +A+  +L      
Sbjct: 189 SATMPTSVRNIASRHLQAPQDIKIKGETASLPAINQRYWLVSGLHKLDALTRMLEAEEYD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     K L    +   AL+G++ Q  R   +  ++     + +ATDVAA
Sbjct: 249 ATIIFVRTKIATEELAKKLMARGYAAAALNGDIPQSSREKVVDQLKKNTIDIIVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  +    +HR GRTGRAGR G +   +    +R    + R    
Sbjct: 309 RGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSAIKRATGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHD--PEKIAAGF- 420
            +     PS + + +R  +R  Q  +     +     + ++     + D  P  IAA   
Sbjct: 369 PLYEMQLPSHQQVIDRRIERFKQQVMNTLEKENLVAFRHLIQQWAQQEDLSPLDIAAALT 428

Query: 421 -LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                   L  P    PV+  +   R     ++ KV        
Sbjct: 429 YSMQRERPLVGPPRSEPVTHGAPPPRKVAKHKSRKVAPAETTKR 472


>gi|82543242|ref|YP_407189.1| ATP-dependent RNA helicase RhlE [Shigella boydii Sb227]
 gi|81244653|gb|ABB65361.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
          Length = 454

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLQNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSSDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|300865385|ref|ZP_07110194.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
 gi|300336620|emb|CBN55344.1| DEAD/DEAH box helicase-like [Oscillatoria sp. PCC 6506]
          Length = 480

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 131/437 (29%), Positives = 210/437 (48%), Gaps = 19/437 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   +     L   G+   T +Q   +   L  +DV+  AQTG+GKT AF L +  
Sbjct: 4   TFESLGISEERIRHLETLGFSEPTPIQTQAIPHLLAGRDVVGQAQTGTGKTAAFSLPILE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------GVVVAVCIGGV 112
            +          +A  AL + PTRELA+QV   +  L   +         + V    GG 
Sbjct: 64  RIDL------GVTAVQALILTPTRELALQVTEAIRELSGLSEGPVKLGRSLQVLTVYGGQ 117

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S+ R+ + L+ G HIVVGTPGR+ D +    L +  LK +VLDEADEML +GF  D+E I
Sbjct: 118 SIDRQMQRLRRGVHIVVGTPGRIIDMLNRGSLKLDQLKWMVLDEADEMLSMGFIQDVEKI 177

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-R 231
           L+++P   +   FSAT+  +I  L   + +  + V +         I     +V     +
Sbjct: 178 LEAAPADHQTAFFSATMEASIRKLVSKHLRSPINVTVEQPKATPKRIRQCVYMVPRGWSK 237

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             A+  IL     ++A++F  TRA+ +  T  L      V    G L+Q +R   L    
Sbjct: 238 SRALQPILEMEDPESALIFVRTRAAAAELTSQLQAAGHSVDEYHGNLNQAQRERLLSRFH 297

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             + R  +ATD+AARG+D+ DL  VI+ +L  + E+ +HR GRTGRAGR+G ++ +I   
Sbjct: 298 QSQVRWVVATDIAARGLDVNDLTHVINYDLPDSVESYVHRIGRTGRAGREGTAITLIQAV 357

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLA 409
            +R+   + R    ++     P+   I  +  +++        + +       +V  L  
Sbjct: 358 DRRKLRLIERHVRQTLTVRTIPTRSQIEGKQLEKMQAKVREALAGERMASFLPLVSQLCE 417

Query: 410 KHDPEKIAAGFLRIHRA 426
           ++DP  IAA  L++   
Sbjct: 418 EYDPHAIAAAALQMTFD 434


>gi|168185435|ref|ZP_02620070.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169296498|gb|EDS78631.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 476

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 149/532 (28%), Positives = 236/532 (44%), Gaps = 71/532 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + +   GY N T VQE  +   L+ KD++V +QTGSGKT +FG+ L   +  EN
Sbjct: 8   LSSEILKTIKMLGYKNPTEVQEKTIPIVLQGKDIIVKSQTGSGKTASFGIPLCEKVKLEN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL + PTRELAVQ+  ++  +     V      G   V  ++  L+   H
Sbjct: 68  KK------PQALILTPTRELAVQIKEDISNIGRFKKVKCVAVYGKEPVSIQKNQLKQRVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR  DHI+   L++S +K +++DEAD+ML++GF D +E I+      R  ++FS
Sbjct: 122 IVVGTPGRTFDHIQKGNLDLSDVKYLIIDEADKMLNMGFIDQVEDIIKRLSTDRITMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  +  ++ I  EN     I+     V  S R N +  ++      +
Sbjct: 182 ATLEERIEKLCKRYMNNPEKIEIKRENVTTDVIEQEYYKVDHSKRFNTLTKVIYAEVPDS 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V      +    F   AL G + Q++R   +   + G+ +  +ATDVAAR
Sbjct: 242 AIIFCNTKVEVGNVANKMKNEGFNAKALHGGMDQKDRLYTINDFKRGKFQFLVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ E+    E  +HR GRTGRAG KG S+  +    +R    +      S
Sbjct: 302 GIDVEEITHVINYEVPVEKEGYVHRIGRTGRAGHKGKSITFVSDYEKRMFNEIEEYIGYS 361

Query: 367 VVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           V  +  P  E I +      ++  Q P F       +K     +  K     I AG  + 
Sbjct: 362 VPEKEIPQEEEIEKGKKLFEEKARQRPKF-------KKVKGHEIDKKITKIHINAGKKKK 414

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            RAG                                             VG+        
Sbjct: 415 VRAGDI-------------------------------------------VGA-----INN 426

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           +  +     GI       I VQ   ++V++  D  +++ + +   KG +++ 
Sbjct: 427 IPGLTSDDIGI-------IDVQDAFSYVDILGDKGNIVLKNLDTVKGKKVRV 471


>gi|157146569|ref|YP_001453888.1| ATP-dependent RNA helicase RhlE [Citrobacter koseri ATCC BAA-895]
 gi|157083774|gb|ABV13452.1| hypothetical protein CKO_02330 [Citrobacter koseri ATCC BAA-895]
          Length = 454

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+ + 
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|297379472|gb|ADI34359.1| ATP-dependent RNA helicase [Helicobacter pylori v225d]
          Length = 492

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 128/420 (30%), Positives = 223/420 (53%), Gaps = 14/420 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRVSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSK 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432


>gi|322379432|ref|ZP_08053802.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
 gi|322380957|ref|ZP_08055023.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321146629|gb|EFX41463.1| ATP-dependent DEAD box-containing RNA helicase [Helicobacter suis
           HS5]
 gi|321148141|gb|EFX42671.1| ATP-dependent RNA helicase, DEAD-box family [Helicobacter suis HS1]
          Length = 471

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 127/458 (27%), Positives = 229/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +++++ G+   + +QE  +   L  KDV+  AQTG+GKT AF L +   L  + 
Sbjct: 27  LHSKILKSIADAGFTGPSPIQEKAIPVILEGKDVIAQAQTGTGKTAAFALPIIQNLQND- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL I PTRELA+Q+  E+  L   +        GG S+ ++   L+    
Sbjct: 86  ------KSIEALIITPTRELAMQISDEIFKLGKSSRTRTICVYGGQSIKKQCDLLERNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ K L     + VVLDE+DEMLD+GF DDIE I +  P+  ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNKRLKRFAPRVVVLDESDEMLDMGFLDDIEEIFNYLPEDAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    +D V ++IA  +  ++DI  R  ++   +R+ AI+ +L       
Sbjct: 200 ATMPAPIKDLANKILQDPVSIHIAPTHVTNADISQRFYVINEHERNEAIMRLLDKENHSK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F   +  V    + L+   ++   L G++ Q+ R  +++  +   A V +ATDVA+R
Sbjct: 260 SIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARRESIKAFKSKLADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V +  L  N E+ +HR GRTGRAG+KG+++ ++     +  +R+ ++   S
Sbjct: 320 GLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLVTPLEYKELQRMQKDIGSS 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P++         R++Q    ++ +  +   + + L  + +P ++    L +   
Sbjct: 380 IELYEIPNMNE------DRLIQAISKVE-VDAEVVSLYEQLTEQFEPSQLVLKLLSLQFK 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     V         +  S+ +K G       +
Sbjct: 433 SYKVDLNQILVEPKPVTRPKKHISKTYKSGRFKDSRRR 470


>gi|293409172|ref|ZP_06652748.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469640|gb|EFF12124.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 454

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   +  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVMEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|332088993|gb|EGI94105.1| putative ATP-dependent RNA helicase rhlE [Shigella boydii 5216-82]
          Length = 441

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATLSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|300113218|ref|YP_003759793.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539155|gb|ADJ27472.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 500

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 210/447 (46%), Gaps = 14/447 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +A+ + GY   T +Q   +   L   D++  AQTG+GKT AF +     L    
Sbjct: 15  ISAPILQAIKQVGYETPTLIQARAIPHLLAGHDLVGQAQTGTGKTAAFAIPTLERLELSR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                   P AL + PTRELA+QV    +           +   GG S+  + R L+ GA
Sbjct: 75  ------REPQALVLVPTRELAIQVAEAFQSYARHLEDFHVLPIYGGQSMGNQLRQLKRGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R K L ++ L  V+LDEADEML +GF +D+E+IL   P KR++ +F
Sbjct: 129 HVIVGTPGRIMDHLRRKSLILTTLTTVILDEADEMLKMGFIEDVEWILKQVPTKRQVALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  ++  +A  +      + I  +      I+ R  LV+   + +A+  +L      
Sbjct: 189 SATMPTSVRNIASRHLHAPQDIKIKGKTASLPAINQRYWLVSGLHKLDALTRMLEAEEYD 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +     K L    +   AL+G++ Q  R   +  ++     + +ATDVAA
Sbjct: 249 ATIIFVRTKIATEELAKKLTARGYAAAALNGDMPQSSREKVVDQLKKNTIDIIVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V++ ++  +    +HR GRTGRAGR G +   +    +R    + R    
Sbjct: 309 RGLDVKRIGHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLSAIKRATGQ 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHD--PEKIAAGF- 420
            +     PS + + +R  +R  Q  +     +     + +V     + D  P  IAA   
Sbjct: 369 PLYEMQLPSHQQVIDRRIERFKQQVMNTLEKENLSAFRHLVQQWAQQEDLSPLDIAAALT 428

Query: 421 --LRIHRAGLCAPEEITPVSLVSGRDR 445
             ++  R  + AP     V       +
Sbjct: 429 YSMQRERPLVGAPRSEPVVHGTPSSRK 455


>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 515

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 218/445 (48%), Gaps = 12/445 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGNE------RHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + R     +    APS+  + E       + +++    L+++   +    ++L       
Sbjct: 356 IERLTKRKIARRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKSSAEELLNDTDSVT 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSL 439
            +AA    + +     P  IT    
Sbjct: 416 LLAAALKLLTKEPDTTPVNITEEKP 440


>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 534

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 146/436 (33%), Positives = 227/436 (52%), Gaps = 11/436 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  +   I + ++E G+ + + +Q+  +   L  KD++  AQTG+GKT A+GL   +
Sbjct: 17  FQSF-GLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E            L + PTRELA+QV  EL  L    G+      GG S  ++   
Sbjct: 76  RIKVE-------DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA + V TPGRL D ++GK L       V+LDEADEMLD+GF DDIE I +  P KR
Sbjct: 129 VAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKR 188

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA  YQ     V IA+  +   +I+    ++  ++R+ A+V IL 
Sbjct: 189 QTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILD 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y     AI+F  T+         L+   + V AL G+L+Q++R   L+ + DGR ++ +A
Sbjct: 249 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL LVI+  L  + E+  HR GRTGRAG+ G +V ++     R   RL 
Sbjct: 309 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 368

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             +  ++     P+ + +     +  L+  +  + I  D + +++ LL   D   IA   
Sbjct: 369 GTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTE-IHADAEAVLEKLLKLEDKRSIALKL 427

Query: 421 L--RIHRAGLCAPEEI 434
           L   +    +  PE+I
Sbjct: 428 LSKMLDNTKISGPEKI 443


>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 529

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 146/436 (33%), Positives = 227/436 (52%), Gaps = 11/436 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  +   I + ++E G+ + + +Q+  +   L  KD++  AQTG+GKT A+GL   +
Sbjct: 12  FQSF-GLRPEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQTGTGKTAAYGLPCLN 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E            L + PTRELA+QV  EL  L    G+      GG S  ++   
Sbjct: 71  RIKVE-------DGMQVLVLTPTRELALQVSDELFKLGKHLGIKTTTIYGGSSYSKQITQ 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA + V TPGRL D ++GK L       V+LDEADEMLD+GF DDIE I +  P KR
Sbjct: 124 VAKGAQVAVATPGRLLDLLKGKELKNFKPSMVILDEADEMLDMGFMDDIESIFNLLPTKR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA  YQ     V IA+  +   +I+    ++  ++R+ A+V IL 
Sbjct: 184 QTLLFSATMPEPIKKLASKYQTHPAHVKIAATEKSSKNIEQVYYIIDEAEREIAVVRILD 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y     AI+F  T+         L+   + V AL G+L+Q++R   L+ + DGR ++ +A
Sbjct: 244 YENPFKAIIFTKTKKEADDLKSTLSFKGYPVEALHGDLNQKQREQVLKSLHDGRVKILVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL LVI+  L  + E+  HR GRTGRAG+ G +V ++     R   RL 
Sbjct: 304 TDVAARGLDVKDLSLVINYHLPFDSESYTHRIGRTGRAGKSGKAVTLVTTRESRALLRLK 363

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             +  ++     P+ + +     +  L+  +  + I  D + +++ LL   D   IA   
Sbjct: 364 GTSGTNLTIAALPTKKEVHLSREEDFLKKVVDTE-IHADAEAVLEKLLKLEDKRSIALKL 422

Query: 421 L--RIHRAGLCAPEEI 434
           L   +    +  PE+I
Sbjct: 423 LSKMLDNTKISGPEKI 438


>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 487

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 212/380 (55%), Gaps = 4/380 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY  +T +QE  +   L+ KDV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             ++  EN   SPA  P+ AL + PTRELAVQV  +++     T +  AV  GG+ +  +
Sbjct: 63  QRMMKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKYTNLNSAVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA ++ +D V + +A  N   + ++     V   D+  A+  
Sbjct: 183 KQRITLLFSATFSPEIKRLAASFLQDPVTIEVARSNATAATVEQHFYSVGADDKRRALHQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    K A VF +++   +R  + L     +  AL G+ SQ ER  AL+  + G   +
Sbjct: 243 ILKARDLKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALESFKSGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +  + QR   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVAASDQRLVT 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +     +  EP    E 
Sbjct: 363 DIEKLIKTKIEIEPMEFEED 382


>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
 gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 135/415 (32%), Positives = 204/415 (49%), Gaps = 12/415 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL E GY   T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++R        AL + PTRELA+Q+G   E     TG+   V  GGV    +  +
Sbjct: 62  KLYKTDNR----KGIKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDE 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +    +N+  L   VLDEAD MLD+GF  DI  IL   P KR
Sbjct: 118 LKRGVQILVATPGRLQDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKR 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I TLA +   D  +V +   +     I      V   ++ + ++++L+
Sbjct: 178 QTLFFSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLK 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + ++F  T+    +  + L++      A+ G  SQ  R  AL   +    RV IA
Sbjct: 238 DPSIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAG  G+++           + + 
Sbjct: 298 TDIAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQ 357

Query: 361 REANVSVVW---EPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +    ++      P  + + I  +E+  + I          +G+ +   D    K
Sbjct: 358 KLIGKTIPIIKDHPFITTDGIQAQEKKTEEIKVKAKENKKYRGN-RSNGDFWRRK 411


>gi|291277508|ref|YP_003517280.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
 gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
          Length = 513

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 208/427 (48%), Gaps = 15/427 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+   + + + + + G+   T +QE  +   L+E+DV+  AQTG+GKT AF L +   
Sbjct: 19  FENLGLSKTVLKGVLDAGFRMPTPIQEQAIPAILQERDVIAQAQTGTGKTAAFTLPILEM 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           +  AL I PTREL +QV  E+  L     +      GG S+ R+   L
Sbjct: 79  LHHNQ-------SIEALIITPTRELTMQVSDEIYKLGRPKNIKTVCVYGGQSIKRQCELL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL DH++   L+    + VVLDE+DEMLD+GF DDIE I +  P   +
Sbjct: 132 AKNPQIMVATPGRLLDHLKSGRLDNFTPRFVVLDESDEMLDMGFLDDIEEIFNYLPNNIQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNILR 240
           +L+FSAT+  AI  LA+    + + + I       + D+     ++   +R  A++ IL 
Sbjct: 192 VLLFSATMPEAIKKLAQRILHNPIHIKITPTANMTNLDVTQYYCVIGEGERQEALMRILD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+F  T+         L    ++   L G++ Q++R  A+   +    ++ +A
Sbjct: 252 TENIYKSIIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDFKKCHYKILVA 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+ D+  V +  + +N E  +HR GRTGRAG+KG ++  +     +  +++ 
Sbjct: 312 TDVASRGLDISDVSHVFNYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLKKIQ 371

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +    +     P +    +    ++LQ       I     ++++ L    D  +I    
Sbjct: 372 EDVGSKLEIYEIPHMPQSPKTFVNKVLQT-----KIHNSALEILESLKEYLDSTQIILKL 426

Query: 421 LRIHRAG 427
           L +   G
Sbjct: 427 LSMQMEG 433


>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 425

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 142/422 (33%), Positives = 226/422 (53%), Gaps = 17/422 (4%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  +   + ++L E G+ + T +Q+  +   L   D++  AQTG+GKT AFG+ +   +
Sbjct: 14  TFNQLDLKVQKSLEEMGFESPTPIQKEAIPLALEGYDIVGQAQTGTGKTAAFGIPIIENI 73

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-L 121
                  S      A+ + PTRELA+QV  EL  +    GV      GGVS+ R+     
Sbjct: 74  N------SRERGVKAIVLTPTRELAIQVAHELSLIGKNKGVSAYPIYGGVSIERQANILK 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    IVVGTPGR+ D I    L +  ++  VLDEAD+MLD+GF +DIE IL  +P++++
Sbjct: 128 RGRNQIVVGTPGRVKDLISRGLLKLDRVRFAVLDEADQMLDMGFIEDIEEILSKTPREKQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  L  NY K   +     +N     +  R + V   D+  A+  +L+ 
Sbjct: 188 TLLFSATMPYEIRKLIDNYLKSGYKTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKE 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H   + IVF  T+   +   K L +      A+ G+LSQ++R N ++  ++G+ +  +AT
Sbjct: 248 HQGTSTIVFVKTKRDAAEIEKELQKRSINARAIHGDLSQRQRENVMKAFKEGKVKTLVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ D+ LVI+ EL  NPE+ +HR GRTGRAGR+G ++ ++  N +RR  R+  
Sbjct: 308 DVAARGIDIKDVGLVINYELPENPESYVHRIGRTGRAGREGTAISLVADNEKRRIYRIKG 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD--SIQGDEKKMVDVLLAKHDPEKIAAG 419
             ++          E  +  D + + QD L  D   +    +K+   LL + DPE++ + 
Sbjct: 368 LKHIK--------PEKFKANDLRDLKQDLLSADVGKVSEKIRKVAKELLRERDPEEVISL 419

Query: 420 FL 421
            +
Sbjct: 420 LI 421


>gi|94984710|ref|YP_604074.1| DEAD/DEAH box helicase-like protein [Deinococcus geothermalis DSM
           11300]
 gi|94554991|gb|ABF44905.1| ATP-dependent RNA helicase DbpA [Deinococcus geothermalis DSM
           11300]
          Length = 591

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 163/583 (27%), Positives = 261/583 (44%), Gaps = 39/583 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   +   L+ERG    + +Q   L   L  KD++  A+TG+GKT+AF L +  
Sbjct: 1   MNFDQLIAPELAARLAERGITEASPIQAESLPHTLAGKDLIGRARTGTGKTLAFALPIIQ 60

Query: 61  TLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L A + R S      P A+ IAPTRELA QV  E      +         GG +   + 
Sbjct: 61  NLTAPDGRGSRERGRLPRAIVIAPTRELAKQVAEEFSKSGPQLS--TVTVYGGAAYGPQE 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +VVGTPGRL DH+    L++S ++  VLDEADEML +GF D IE IL  +P 
Sbjct: 119 NALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPA 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ ++FSAT          K  ++  V   +     Q +       +     R   + +
Sbjct: 179 ARQTMLFSATLNDEIHRLARKYLREPVVVDLVGEGKSQAAQSVEHLKVKVGRTRTRVLAD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  + AIVF  T+         L     +  AL G+L+Q +R  AL   R GR  V
Sbjct: 239 LLTVYNPEKAIVFTRTKREADELANELIHRGIESEALHGDLAQSQRERALGAFRSGRVGV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +      R   
Sbjct: 299 LVATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGDRENRELR 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-IQGDEKKMVDVLLAKHDPEKI 416
            L     V     P P+ + ++   A+        +DS +    +   + L ++   E +
Sbjct: 359 NLEYRTGVQFKERPLPTPKEVQAASARASADLVRKVDSGVAATFQAEAERLFSELGLEAL 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           A    +I        E +   SL+SG +                    G +   L     
Sbjct: 419 ARALAKIS----GVTEPVQAASLLSGEE--------------------GLTTLIL---RG 451

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           ++      + +L RS  ++ + +G +R     T  +V ++ V+ L     L+  + L+  
Sbjct: 452 ERLSVPRTVALLARSGDVDTRRLGKVRQWRGGTVADVPSEYVEKLLAASPLEGEVHLEVA 511

Query: 537 GG-----EKPDFRGYKSS-GFKSKNSQDGATKRFKRFKGASKN 573
                  E P   G + S G ++ +  +  ++ F+  +G   N
Sbjct: 512 QELPELFEAPTREGRQGSYGPRTGSRDESGSRNFRGSRGGYGN 554


>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 526

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 240/451 (53%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  + + I  A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N       A  AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIDTNNQ------AIQALIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V IA++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---A 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N        
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDP 413
           E L ++    +    A      +++ A + ++  +  ++I+ +    KK    L A+  P
Sbjct: 355 EDLTKKRMKGLKPATAQEAFEAKKKVALKKIEREMADETIRSNFDKFKKDAIQLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  PE +  V +   + 
Sbjct: 415 EELA---LYVLTLTVQDPESLPEVEIAREKP 442


>gi|315299273|gb|EFU58525.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 16-3]
          Length = 446

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|301646226|ref|ZP_07246122.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
 gi|301075563|gb|EFK90369.1| ATP-dependent RNA helicase RhlE [Escherichia coli MS 146-1]
          Length = 446

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 460

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 196/380 (51%), Gaps = 5/380 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     I  AL E GYV+ T +Q  ++   L+  D+L +AQTG+GKT AF L L
Sbjct: 1   MTTFAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPL 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LL   N   SPA  P+ AL + PTRELA+QV   ++       +   V  GGV+++ 
Sbjct: 61  IQRLLPFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKHVPLRSLVVYGGVNINT 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+V TPGRL DH++ K L ++ +  +VLDEAD MLD+GF  D+  I+   
Sbjct: 121 QIPILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRMLDMGFMPDLRRIVALL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R  +MFSAT    I  LA +       + +A      +        V    +   + 
Sbjct: 181 PAQRVNMMFSATFPEEIRKLADSILSTPTFIEVARNETAVTV-TQVVHPVHHERKRQLLA 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++++    +  +VF  T+   +R    L +      A+ G+ +QQER  AL   + G  R
Sbjct: 240 HLIKSRDLRQVLVFTGTKLGCNRLANELNKAGIHADAIHGDKTQQERIKALDAFKAGTIR 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+  L  V++ +L  N E+ +HR GRTGRAG KG ++ ++ +   R  
Sbjct: 300 VLVATDVAARGIDIEALPFVVNYDLPHNAEDYVHRIGRTGRAGAKGEAISLVSEAETRYL 359

Query: 357 ERLFREANVSVVWEPAPSVE 376
           + + R     +     P  E
Sbjct: 360 KDIERLIGTPLEPVIVPGFE 379


>gi|289434525|ref|YP_003464397.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170769|emb|CBH27309.1| DbpA-type ATP-dependent RNA helicase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 474

 Score =  220 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 146/536 (27%), Positives = 240/536 (44%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY + T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E 
Sbjct: 10  LSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTREL VQV  E   +     +  A   G     +++ +L    H
Sbjct: 70  NK------PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FS
Sbjct: 124 IVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ+D V + +A+E                 +++  + ++L      +
Sbjct: 184 ATMPDEMQDLIKRYQEDPVVIEMAAEKTNPITHIEMQT----ENKEKTLQDVLITENPDS 239

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   + +L  +      + G L Q+ER  A+   + G++R  IATDVA R
Sbjct: 240 AIIFCNTKNQVDELSDLLQVNA---AKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGR 296

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N++
Sbjct: 297 GIDVENVTLVINYDLPVEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEDMLNIT 356

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +  P++  +                                           +    
Sbjct: 357 IEKKRKPTIIEV-------------------------------------------KASEE 373

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                ++  P+   +  ++   +       GG +   +                A   + 
Sbjct: 374 AFRKKQQKRPIIKKARGEKLNKNIMKLYFNGGKKKKIR----------------AVDFVG 417

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 418 TISKLEGITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 473


>gi|109947876|ref|YP_665104.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715097|emb|CAK00105.1| ATP-dependent RNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 494

 Score =  220 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 224/464 (48%), Gaps = 14/464 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 29  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 89  T-------IEALVITPTRELAMQISDEIFKLGKHTKTKTVCVYGGQSVKKQCEFIKKNPQ 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++   ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 142 VMIATPGRLLDHLKNDRIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 201

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+++L     + 
Sbjct: 202 ATMPEPIKKLADKILENPIKIHIAPSNITNTDITQRFYVINEHERSEAIMHLLDTQAPEK 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + L    ++  AL G++ Q++R  ++   +   A V +ATDVA+R
Sbjct: 262 SIVFTRTKKEADELHQFLISKNYKSTALHGDMDQRDRRASIMAFKKNDADVLVATDVASR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 322 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 381

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P++        +  +   L    +      + + L    +P ++    L +   
Sbjct: 382 IELFEIPTIN-------ENQIIKTLHGAKVSEGVISLYEQLTEIFEPSQLILKLLSLQFE 434

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                     +  +             K     + +    S   
Sbjct: 435 TNKIGLNQQEIDAIQNPKERVPKPPHKKTHKTEQAHSFKKSRHR 478


>gi|149179168|ref|ZP_01857736.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148841986|gb|EDL56381.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 445

 Score =  220 bits (559), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 200/386 (51%), Gaps = 3/386 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +     + +AL E  Y   T +Q   +   L  +DVL  AQTG+GKT A  L +
Sbjct: 1   MNTFQELKLIAPVQKALVEENYKIPTPIQAQTIPAALEGRDVLGCAQTGTGKTAALALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L  +N R S    PLAL +APTRELA+Q+G   +       +   +  GGV    + 
Sbjct: 61  LNQL-GKNSRKSIPHHPLALVLAPTRELAIQIGDSFDAYGRHLKLRSVLIYGGVGQGNQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GAHI+V TPGRL D +    + ++ L+  VLDEAD MLD+GF  D++ I+   P 
Sbjct: 120 KALKRGAHILVATPGRLLDLMNQGHIKLNQLEVFVLDEADRMLDMGFLPDLKRIITQLPT 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT++P IT LA +     V VN+  +      I  + + V  + +   +  I
Sbjct: 180 QRQSLFFSATLAPKITELAHSLLSKPVTVNVTPKTTSVEKIQQQLMFVERNFKQPLLQKI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A+VF  T+ + +  ++ L    F+  A+ G  SQ  R  AL+  R  + +V 
Sbjct: 240 LGGDEVERALVFTKTKRTANTLSQRLVRSGFKATAIHGNKSQGARQQALEAFRRKQVQVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ +L   PE  +HR GRTGRAG  G+++    ++ ++    
Sbjct: 300 VATDVAARGIDIDGITHVINFDLPVEPEAYVHRIGRTGRAGANGIAISFCSESERKELRS 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     V      S   ++    +
Sbjct: 360 IERLIGQKVPVSKEHSQAGLKAEKLE 385


>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 523

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 126/447 (28%), Positives = 219/447 (48%), Gaps = 12/447 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +  AL++ G+   T +Q+  +   +  KD++  AQTG+GKT AFGL +
Sbjct: 2   LEKFEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPV 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               + ++PTRELA+QV  EL  +   T +      GG  ++R+ 
Sbjct: 62  LERVDGNE------RHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQF 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    ++  H+K VVLDEADEML++GF DDI  IL + P+
Sbjct: 116 RALKKNPQIIVATPGRLMDHMDRGSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+  AI  LA+ Y  +   + +         I+   + V    + + +  +
Sbjct: 176 DHQTLLFSATMPKAIQQLAETYLTEPTLIRMKPTQVTMDLIEQYYIEVQDRQKFDVLCRL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AI+F  T+  V   T+ L +  +    + G+LSQQ+R + ++  R+G   + 
Sbjct: 236 FDIQTPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDIL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+  HR GRTGRAG+ G +   +          
Sbjct: 296 VATDVAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + R     +    APS+  + E       + +++    L+++   +    ++L       
Sbjct: 356 IERLTKRKISRRRAPSLGEVLEGQQRLAIESLVEMTDNLEALAPFKTSAEELLNDTDSVT 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVS 441
            +AA    + +     P  IT    + 
Sbjct: 416 LLAAALKLLTKEPDTTPVNITEEKPLR 442


>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
 gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
          Length = 432

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 194/368 (52%), Gaps = 2/368 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + +AL E+GY   + +QE  +   L  KDVL  AQTG+GKT AF L +  
Sbjct: 2   TFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+  +D+        +L + PTRELA+Q+    +   + T V  AV  GGVS   + ++
Sbjct: 62  NLMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKE 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  I+V TPGRL D I    +++SH++  VLDEAD MLD+GF  D++ I+   P K+
Sbjct: 122 LQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVKK 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  L +    +   V +   +     I+     V   ++   +V++L+
Sbjct: 182 QTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    R  K L ++     A+ G+ SQ  R  AL   + G  RV  A
Sbjct: 242 REAITSTLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRVLAA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+ +L + PE  +HR GRTGRAG  G ++       +   E + 
Sbjct: 302 TDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYVEDIE 361

Query: 361 REANVSVV 368
           +     + 
Sbjct: 362 KLIGKKIP 369


>gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 517

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 147/450 (32%), Positives = 234/450 (52%), Gaps = 18/450 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   NI +    ++   G+   T +QE  +   +  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTNFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N          AL IAPTRELA+QV  EL  L     V +    GG  + R+ 
Sbjct: 61  IEKIDPKNPNI------QALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGR+ DHI  + L +  ++ +VLDEADEML++GF DDI  IL++ P 
Sbjct: 115 RALKNKPQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPS 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ PAI  +A+ + KD   V I ++     +I+   V     ++ +A+  +
Sbjct: 175 DRQTLLFSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   ++ L    F    + G+LSQ +R + L+  ++G+  + 
Sbjct: 235 LDSQKPELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G++V  +          
Sbjct: 295 IATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +     PS E     ++E   Q +++  L  ++  G  +++   LL  +D  
Sbjct: 355 VEETTKKRMTPLRPPSSEEALVGLQEDAMQSLVE--LVQNNDLGTYRELAAKLLENNDAL 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + A  L+     +    + TPVSL   R 
Sbjct: 413 DLVAAALK----SITKEPDATPVSLSEERP 438


>gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 462

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|253756028|ref|YP_003029168.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
 gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
 gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
 gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 514

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 236/452 (52%), Gaps = 18/452 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  + + I  A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLQLSEDILLAVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N       A  +L IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIDTNNQ------AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V IA++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEPIKRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA--- 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N        
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAII 354

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               ++  +    +   E   + + +  +  +R + D    ++     KK    L A+  
Sbjct: 355 EDLTKKRMKGLKPATAEEAFEAKKKVALKKIEREMADETIRNNFDK-FKKDAIQLAAEFT 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           PE++A   L +    +  PE +  V +   + 
Sbjct: 414 PEELA---LYVLTLTVQDPESLPEVEIAREKP 442


>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 473

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 216/379 (56%), Gaps = 4/379 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L+  EN   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +
Sbjct: 63  QRLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R  L+FSAT SP I  LA +Y +D V + +A  N   S ++ R   V+  D+  AI +
Sbjct: 183 KSRTTLLFSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVSDDDKRYAIRS 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    + A +F +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   +
Sbjct: 243 VLKERDIRQAFIFSNSKLGCARLTRALERDGLRAGALHGDKSQDERLKALEAFKAGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVA 362

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +     +  EPAP ++
Sbjct: 363 DIEKLIKKKIDVEPAPMLD 381


>gi|317181556|dbj|BAJ59340.1| ATP-dependent RNA helicase [Helicobacter pylori F57]
          Length = 492

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 232/467 (49%), Gaps = 18/467 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IEALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     K 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPKK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSK 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L +    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHNAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 ----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
               GL   E     +      +  +          S    +     
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKVPKTPNKKMHQHEQARSFKKGQHKDRH 479


>gi|291326441|ref|ZP_06124507.2| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
 gi|291314194|gb|EFE54647.1| ATP-dependent RNA helicase RhlE [Providencia rettgeri DSM 1131]
          Length = 442

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 197/385 (51%), Gaps = 8/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + I  A++E GY + T +Q+  +   L   D+L SAQTG+GKT  F L +
Sbjct: 1   MTTFSDLALNEEILLAINELGYESPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+             AL + PTRELA QV   ++       +   V  GGVS++ + 
Sbjct: 61  LQKLITTPRSGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL D      +++S ++  VLDEAD MLD+GF  DI  +++  PK
Sbjct: 121 MKLRGGVDILIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVINKLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  LA     + V + +A  N     +     LV    +   +  +
Sbjct: 181 KRQNLLFSATFSDEIKQLANKLLNNPVTIEVAPRNSASEQVAQYVHLVDKKRKAELLSFM 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV 
Sbjct: 241 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   GM+V ++  +  +  + 
Sbjct: 301 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKD 360

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +    S+       +EP PS++A
Sbjct: 361 IEKLLKKSIPLMAIEGYEPDPSIKA 385


>gi|254519975|ref|ZP_05132031.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
 gi|226913724|gb|EEH98925.1| ATP-dependent RNA helicase DeaD [Clostridium sp. 7_2_43FAA]
          Length = 481

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 143/530 (26%), Positives = 244/530 (46%), Gaps = 69/530 (13%)

Query: 1   MKI--FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MKI  FEN  + + I +AL   G+   + VQ+ ++   L +KD++V +QTGSGKT +FG+
Sbjct: 1   MKIDKFENMNLSEEILKALKNLGFEKPSEVQQEVIPYILDKKDLVVKSQTGSGKTASFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L   +  E ++        AL + PTRELA+QV  ++  +     V  A   G    + 
Sbjct: 61  PLCELVNVEENKVK------ALILVPTRELAIQVKEDISNIGRLKKVRCAAIFGKQPFNE 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+   HIV GTPGR+ DHI    L+I+ +  V++DEAD+ML++GF D I  +LD  
Sbjct: 115 QIRELKQRVHIVCGTPGRVIDHIERGNLDINDIDFVIIDEADKMLNMGFIDQITDVLDKL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ +   +FSATI   I  L  NY  +   +NI S+      I  +   V   ++   ++
Sbjct: 175 PQSKNTALFSATIPKEIEGLYSNYMNNPTVLNIRSKVFNRDKISEKYFNVDREEKFKYLL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L     ++AI+FC+T+ SV   + +L +    V  L G++ Q++R   ++  ++   +
Sbjct: 235 KSLYAFTDESAIIFCNTKDSVRNLSSLLKKEKISVKELHGDMDQKDRLATMENFKNKEFK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGI +  +  V + E+    E+ +HR GR+GR  +KG+++ ++ +  +R  
Sbjct: 295 VLVATDVAARGIHINHITNVFNYEVPIEKESYVHRIGRSGRGDKKGLAISLVSKGERRFL 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             +    N S+        E I E   +       F +S + D     +V    H     
Sbjct: 355 NEIEEYINYSIEEANLLEYEEIIEGRKR-------FFESQKNDYNNKTNVKKNIH----- 402

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                           E+T + + +G                                 K
Sbjct: 403 ---------------NEVTKIHITAG--------------------------------KK 415

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +K     ++        +  + IG I VQ   +FV++     +L+ +  K
Sbjct: 416 KKIRNIDIVGAFSNLEELTGEDIGIIDVQDGHSFVDILNGKGNLILKRYK 465


>gi|317127486|ref|YP_004093768.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472434|gb|ADU29037.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 500

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 148/481 (30%), Positives = 244/481 (50%), Gaps = 11/481 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+  NI   I EA+ + G+   T +QE ++      +D++  AQTG+GKTVAFG+  
Sbjct: 1   MALFKDLNIQPSIVEAIEKMGFEETTPIQEKVIPLGKEGQDIIGQAQTGTGKTVAFGIPC 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ E         P AL + PTRELA+QV  EL  L    G+      GG  + R+ 
Sbjct: 61  VEQVVVEE------KHPQALVLTPTRELAIQVAEELNKLGQVKGIKALPIYGGQEITRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    I+V TPGR  DH+R K +    LK VVLDEADEML +GF +DIE IL   P 
Sbjct: 115 TALKKRPQIIVATPGRYMDHMRRKTIRPEFLKIVVLDEADEMLSMGFIEDIETILQEVPG 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P + T+A  +    V + + ++     +I+ R + ++  ++ + + N+
Sbjct: 175 ERQTLLFSATMPPKLKTIADRFMNKPVSIAVKAKQLTVENIEQRYIALSEKEKFDTLCNL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F  T+  V   T+ L+   F V  L G++ Q+ R   ++  + G   V 
Sbjct: 235 LDMETPELAIIFGRTKRRVDELTESLSIRGFAVEGLHGDMKQERRDQVIRKFKRGSIDVM 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ +L  + E+ +HR GRTGRAG+KG+S   +    +     
Sbjct: 295 VATDVAARGLDVNDVSHVINFDLPQDSESYVHRIGRTGRAGKKGISYSFVTHKEKDHLRY 354

Query: 359 LFREANVSVVWEPAPSV-EAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +       +    AP++ +A+R R  Q + +      ++           LL + DP  +
Sbjct: 355 IEESTRQKMKQVDAPTLADAMRGRHKQAVNELKKAVNNAASKQLTGEAKQLLEEFDPVVL 414

Query: 417 AAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
            +  L++  +       +IT  + V  + R        + GGG R   +G+    ++   
Sbjct: 415 VSAALQMVTKEPSKKQVKITGEAPVRSKKRPSGGGGGGRSGGGKRRKDRGTGGARINAKK 474

Query: 476 K 476
           +
Sbjct: 475 R 475


>gi|325283382|ref|YP_004255923.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           proteolyticus MRP]
 gi|324315191|gb|ADY26306.1| DEAD/DEAH box helicase domain protein [Deinococcus proteolyticus
           MRP]
          Length = 612

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 169/572 (29%), Positives = 261/572 (45%), Gaps = 43/572 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   E I   +   L+ERG    + +Q   L   L+ +D++  A+TG+GKT+AF L +  
Sbjct: 1   MNFNELIAPALAARLAERGITEASPIQAESLPHTLQGRDLIGRARTGTGKTLAFALPIIQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R   +  P A+ +APTRELA QV  E E    +    V    GG +   +   
Sbjct: 61  GLEPSRER---SRLPRAIVVAPTRELARQVAAEFEQTGREL--TVLTVYGGAAYGPQETA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL DH+    L++  +K  VLDEADEML +GF D IE IL ++P+ R
Sbjct: 116 LRRGVDVVVGTPGRLIDHLERGNLDLQEVKYAVLDEADEMLSVGFADAIETILKTTPEGR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT++P I  L+  Y  D  V   +     Q +       +     R   + ++L
Sbjct: 176 QTLLFSATLTPEIRRLSNKYLNDPLVVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + AIVF  T+         L    F+  AL G+L+Q +R  AL   R GR  + +
Sbjct: 236 TVYNPEKAIVFTRTKRETDELALELIHRGFEAEALHGDLAQNQRERALGSFRSGRTSILV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +     QR    L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRAGTAIIMYGDREQRDINGL 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAA 418
            R   V     P P+   ++E  A    +    +D        +  + LL +   E +A 
Sbjct: 356 ERVTGVRFTERPLPTPREVQEASAHASSEMLRRVDAEAAAGFMEQAEALLEEMGAEALAR 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
              +I        E   P SL+SG +             G           S++     +
Sbjct: 416 ALAKIS----GVTEPQAPASLLSGEE-------------GQTTLILHGERLSIA-----R 453

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
           A     + +L R S ++ + +G +R        +V    V  L +   LD  I ++    
Sbjct: 454 A-----VALLARHSDVDSRKLGKVRQWRGGAVADVPTQYVAALMKASPLDGEIGVEVAQE 508

Query: 539 -----EKPDFRGYKSSGFKSKNSQDGATKRFK 565
                E+P            ++  D   +RF+
Sbjct: 509 LPELFEQPTRERRDGG----RSFGDRGGRRFE 536


>gi|288554498|ref|YP_003426433.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545658|gb|ADC49541.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 502

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 132/416 (31%), Positives = 219/416 (52%), Gaps = 10/416 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +   +  A+++ G+   T +Q A +   L  KD++  AQTG+GKT AFG+ L
Sbjct: 1   MATFYEFGLNSEVVRAVTQMGFEEATPIQAATIPTALEGKDIIGQAQTGTGKTGAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  END         AL +APTRELA QV   L       GV   V  GG  + ++ 
Sbjct: 61  IDRINIENDHV------QALILAPTRELANQVAESLFKFGKYKGVRTVVVYGGQDMRKQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+N  H+VV TPGRL DH+R K + +  ++ VVLDEADEML++GF +DIE IL   P 
Sbjct: 115 RDLKNKPHVVVATPGRLMDHMRRKTIRLGQVETVVLDEADEMLNMGFIEDIETILSEVPN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  LA+ +  +   + + S+     +I+ + V V    + + +   
Sbjct: 175 ERQTLLFSATMPKRIEKLAQTFMSEPKLIAVKSKEVTMENIEQQYVEVHERQKFDTLCRF 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  + AIVF  T+  V   ++ L +  ++   + G+L+Q +R + L+  ++G   V 
Sbjct: 235 IDIHTPELAIVFGRTKRRVDELSEALTKRGYRAEGIHGDLNQAKRDSVLRKFKNGLVDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAG+ G+++       +   + 
Sbjct: 295 VATDVAARGLDITGVTHVYNFDLPQDPESYVHRIGRTGRAGKSGLALTFATPREREHVKT 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHD 412
           + + +   +     P+ E   +   +  ++    L  +      + +   LL + D
Sbjct: 355 IEQVSKKKMTRREVPTYEEAIKGQQELAVEQLRGLIAEGGADAYRAIAKDLLQESD 410


>gi|283784562|ref|YP_003364427.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948016|emb|CBG87580.1| putative ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 451

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T VQ+  +   L  +D++ SAQTG+GKT  F L L   L+ + 
Sbjct: 8   LNPEILRAIAEQGYREPTPVQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITQQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKRLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMTTPGYEPDPSIKA 384


>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
 gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
          Length = 448

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPTKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIATPGYEPDPSIKA 384


>gi|296876849|ref|ZP_06900897.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
 gi|296432351|gb|EFH18150.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           15912]
          Length = 523

 Score =  219 bits (558), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 232/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N      +   AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDVDN------TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+F  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIIFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNVDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   Q  L+    ++    DEK   +      D  K+AA 
Sbjct: 355 ENLTKKRMKGMKPATAEEAFQAKKQVALKK---IERDFEDEKIRTNFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
 gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
           ATCC 43768]
          Length = 457

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|213619180|ref|ZP_03373006.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 455

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/441 (21%), Positives = 176/441 (39%), Gaps = 55/441 (12%)

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  AI  + + + K+   V I S      DI      V    ++ A+V  L     
Sbjct: 12  FSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 71

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F  T+ +     + L  + +   AL+G+++Q  R   L+ ++DGR  + IATDVA
Sbjct: 72  DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 131

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   
Sbjct: 132 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 191

Query: 365 VSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIA 417
           +++     P+ E + +R  ++    +Q  L    +        K        + D E +A
Sbjct: 192 LTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLA 251

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGSRDNF 463
           A  L++ +     P  + P + +  +  FRD                   +     R + 
Sbjct: 252 AALLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDV 309

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVD 519
                + + VG     E R ++  +     I+ + IG I++    + +E+      + + 
Sbjct: 310 GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQ 369

Query: 520 LLRRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK---------------- 552
              RT  L+K + ++ LG   P            F G +  G +                
Sbjct: 370 HFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGDGRR 429

Query: 553 -SKNSQDGATKRFKRFKGASK 572
            S   ++    R     G  +
Sbjct: 430 FSGERRESRGPRRDDSTGRRR 450


>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
 gi|149127966|gb|EDM19188.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
          Length = 375

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 198/368 (53%), Gaps = 1/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  +   L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   +          AL + PTRELA+Q+   ++     T V   V  GGV+   +  
Sbjct: 61  QHLQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVD 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 121 MLRKGIDILVATPGRLLDLMNQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I TL K+  K+ V++ I  ++     I+     V   ++   +++IL
Sbjct: 181 KQTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISIL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 241 QKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L +VI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 301 ATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 360

Query: 360 FREANVSV 367
            +     +
Sbjct: 361 QKLTGKKL 368


>gi|215485885|ref|YP_002328316.1| ATP-dependent RNA helicase RhlE [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969182|ref|ZP_07783389.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
 gi|215263957|emb|CAS08297.1| RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|312286584|gb|EFR14497.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli 2362-75]
          Length = 453

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQYLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|150016695|ref|YP_001308949.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903160|gb|ABR33993.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 480

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 135/520 (25%), Positives = 228/520 (43%), Gaps = 65/520 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +++   GY N + VQE ++   L  KD++V +QTGSGKT AFG+ L   +    
Sbjct: 10  ISDEILKSIEGLGYKNPSKVQEKVIPEILLNKDIIVKSQTGSGKTAAFGIPLCEKVDWNE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P  L + PTRELAVQV  ++  +     +      G   +  + R L+   H
Sbjct: 70  ------NIPQILVLTPTRELAVQVSEDITNIGRFKRIKSVSIFGKEPISEQERKLKQKTH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DHI    LN++ +K  V+DEADEML++GF   +E I+   PKK+  ++FS
Sbjct: 124 VVVGTPGRILDHIDRGSLNLAQIKYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTMLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   I  L   Y    V ++I ++   + +ID+        ++   + +IL     + 
Sbjct: 184 ATIPEEIKVLCDKYMNKPVDISINNQKLINENIDHNLYYTNYEEKIEKLNDILITEKPET 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +V    + L    + V  + G + Q+ER + +   R G  R+ ++TD+A+R
Sbjct: 244 VVIFAKTKENVDTVFQWLKSKGYSVNRIHGGMLQKERLSIMDGFRLGDFRILVSTDLASR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ +L    E  +HR GRTGRAG KG ++        +    +       
Sbjct: 304 GIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVNEKDKLLSEIEEFIGFK 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P          ++I+ +    + I+                             
Sbjct: 364 IPVYNLP----------EKIMVEKEKSEGIK----------------------------- 384

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                      +L S   R  + S+             G          K+K  A  ++ 
Sbjct: 385 -----------TLKSKPKRKEEKSKTINNNITKIYLNGG---------KKKKIRAGDIVG 424

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
            +C+  GI  + IG I VQ  +++V++       +   +K
Sbjct: 425 AICKMDGIKSEDIGIIDVQDSVSYVDILNGKGKRVIDELK 464


>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 462

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRER 381
             +       +E  R+R
Sbjct: 367 RKLPELTIEGMEPTRKR 383


>gi|116511209|ref|YP_808425.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106863|gb|ABJ72003.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 551

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 240/505 (47%), Gaps = 41/505 (8%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I + L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + AEN       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKINAENP------AIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPQLAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N       +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDP 413
            +  N  +     P+ E   +      + D L   S +  +       K    LL K D 
Sbjct: 355 EKLTNKEMKGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEKFDA 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS---------------------------GRDRF 446
           +++ A  L+         EE+   +                               RD  
Sbjct: 415 KELVALLLQGRVKDPDNQEEVKITAERPLPYNGEGKGFKKKGKGGGGRYKGRGNGDRDGN 474

Query: 447 RDDSR-AFKVGGGSRDNFKGSSWFS 470
           RD +R  ++    S+D  +G     
Sbjct: 475 RDGNRGGYRGNRDSKDGERGGDRKR 499


>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
 gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
          Length = 462

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 3/377 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRER 381
             +       +E  R+R
Sbjct: 367 RKLPELTIEGMEPTRKR 383


>gi|323953540|gb|EGB49406.1| DEAD/DEAH box helicase [Escherichia coli H252]
          Length = 453

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRTLILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIPGYEPDPSIKA 384


>gi|303256348|ref|ZP_07342364.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
 gi|302861077|gb|EFL84152.1| RNA helicase DeaD [Burkholderiales bacterium 1_1_47]
          Length = 510

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 145/513 (28%), Positives = 233/513 (45%), Gaps = 25/513 (4%)

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTREL +QV   +      +GV V    GG    R+ + L  G  IVV TPGR  D
Sbjct: 2   LILTPTRELCIQVSEAINSFARSSGVYVLPVYGGQDYSRQIKALSRGVQIVVATPGRALD 61

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HIR   LN++ +KAVVLDEADEMLD+GF +D+E I  + P+KR+  +FSAT+ P I  +A
Sbjct: 62  HIRRGTLNLTEIKAVVLDEADEMLDMGFAEDLEAIFAALPEKRQTALFSATLPPKIAKIA 121

Query: 198 KNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +N+  DA  + I  E         +   A +V  + +  A+  IL     + AIVF  TR
Sbjct: 122 ENHLHDAFHILIPKEKVPEGEQPKVKQSAYIVGRNHKTAALGRILDIESPRLAIVFARTR 181

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    + L    + V  L G L Q +R   ++  R  +  V +ATDVAARGID+  L 
Sbjct: 182 NEVDELAESLRGRGYSVEPLHGGLDQAQRDRVMKRARAEQVDVIVATDVAARGIDIDHLT 241

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+  + S+ E  +HR GRTGRAGR+G ++ ++     R  + + R     +     P+
Sbjct: 242 HVINFGIPSSAETYVHRIGRTGRAGREGTAITILEPRESRLLKNIERLTKRKITLLSVPT 301

Query: 375 VEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG---- 427
              +  +     +  + + L  +S  G  + +V+ L  + D   +AA  ++         
Sbjct: 302 ATDVHAKRLDLTRSSIHEILVNESDLGKYRSVVENLADEFDILDVAAAAVKFANEANWKD 361

Query: 428 ---LCAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
              +  P++++   +    R    +     +   G R+  +G     +  G       + 
Sbjct: 362 VSEIELPDDLSWKKAPREDRRDRGERGERTRKERGPRELSQGMVRLFIGAGRDAGVRPQD 421

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGGE 539
           L+  +   +GI  + IG+I +    + VEV  +        LR      +   ++Y    
Sbjct: 422 LVGAIANEAGIPSKLIGSIDIADRFSLVEVDENVAQDVIYALRDAFIKGRQCVVRYD--- 478

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
               R      + SK     + K  ++ KG  K
Sbjct: 479 ----REGSPKSYPSKKEGKDSEKPSRKGKGNKK 507


>gi|323268735|gb|EGA52195.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 404

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|213620634|ref|ZP_03373417.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 402

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|167748599|ref|ZP_02420726.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
 gi|167651913|gb|EDR96042.1| hypothetical protein ANACAC_03372 [Anaerostipes caccae DSM 14662]
          Length = 478

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 146/537 (27%), Positives = 242/537 (45%), Gaps = 68/537 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EAL+  GY   T++Q+ ++ P L  K+++  A TGSGKT AF + +   +  E 
Sbjct: 10  LSIEILEALNGLGYKKPTNIQQEVIPPMLAGKNIVAKAPTGSGKTAAFAIPICQNVRWEE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +AP AL + P RELAVQV +E+  +  K  + V    GG  + ++ R L+  +H
Sbjct: 70  ------NAPQALVLEPARELAVQVSQEMFHIGRKKRLKVPAVFGGFPIDKQIRTLKQKSH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHIR + L +S+++ +V+DEAD MLD+GF D+++ IL   P   R+ +FS
Sbjct: 124 IVAGTPGRVMDHIRRETLKLSNVQWLVIDEADLMLDMGFIDEMKQILSLVPADCRISLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  +  +AV V   +   Q   I  +    +   + +  ++IL     ++
Sbjct: 184 ATLKPEIRELADEFIPEAVLVMQEAGEEQAPAITEKLYFASQERKYDTFLDILMDENPQS 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC TR   +   + L         L G++ Q+ER   +   R G  R  IATDVAAR
Sbjct: 244 CMIFCGTREMTNVLFQKLRRKRIFCGMLHGDMEQKERLKTVNAFRRGGFRFLIATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID  ++  V++ +  +  E  +HR GRTGR G  G +V ++ ++ QR  +++       
Sbjct: 304 GIDFEEISHVVNYDFPTGKETYVHRIGRTGRNGNSGTAVSLVTEDDQRMLKQVETYLGRE 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P +                      GDEK+                 F +  R 
Sbjct: 364 LPVTEPPVI----------------------GDEKER---------------AFWKFQR- 385

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                  I         +   +      +GGG                 K K  A  ++ 
Sbjct: 386 -------IKAERKPEKGEALNEGITRLSIGGG----------------RKSKMRAGDIVG 422

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
            +C   G+    IG + ++  +++VE+     + +   ++  K I+ K     K   
Sbjct: 423 TICSMEGMEASDIGIVDIRDSISYVEILNRKGNHVLDCLQ-TKPIKGKVRKVRKAGR 478


>gi|16764183|ref|NP_459798.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992052|ref|ZP_02573150.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16419327|gb|AAL19757.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205329602|gb|EDZ16366.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246078|emb|CBG23880.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992563|gb|ACY87448.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157405|emb|CBW16894.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911844|dbj|BAJ35818.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226393|gb|EFX51444.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129127|gb|ADX16557.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987751|gb|AEF06734.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 454

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 444

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 192/379 (50%), Gaps = 3/379 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSALVSAGYETPTPIQAQAVPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTRR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALTYAKNMKWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D +    ++ + L+ ++LDEAD MLD+GF +DIE I+ ++P+ R+ L+
Sbjct: 127 VDLIVATPGRLMDLMDSGKVDFARLEVLILDEADRMLDMGFIEDIETIVAATPEDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   V I   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEVVEIERVDEQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G++V     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAVTFAEVNEYVKVHKIEKYIG 366

Query: 365 VSVVWEPAPSVEAIRERDA 383
             +       +E  R+R A
Sbjct: 367 RKLPELTVEGMEPTRKRKA 385


>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 452

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 192/383 (50%), Gaps = 8/383 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L  
Sbjct: 2   SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +          AL + PTRELA Q+G  +E       +   V  GGVS++ +   
Sbjct: 62  LLSKHDHPIKGRRPVRALILTPTRELAAQIGENVEAYSKHLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +A  N     I+     V    +   +  ++ 
Sbjct: 182 QNLLFSATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +A
Sbjct: 242 EGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP PS++A
Sbjct: 362 RLLKREIPRIALPGYEPDPSIKA 384


>gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 462

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D +R   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMRSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRER 381
             +       +E  R+R
Sbjct: 367 RKLPELTIEGMEPTRKR 383


>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 530

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 151/576 (26%), Positives = 250/576 (43%), Gaps = 51/576 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   +    A+ + GY N T VQE  +   L  +D++ +A TG+GKT AF L +
Sbjct: 1   MTKFADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            STL     R     AP  L ++PTRELA Q+ R    +  +T        GG     + 
Sbjct: 61  LSTLPRVKGR---NRAPRVLVVSPTRELAQQIARTCMQISRQTRHFTTTVFGGTPYGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +++ TPGRL D ++   +N+S ++ +VLDEAD MLD+GF  D+  I+D++P+
Sbjct: 118 KELRGGTDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRMLDMGFLPDVTTIVDATPE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I     +   D   V IA        ++   + +   ++   +  +
Sbjct: 178 CRQTLLFSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKNFNKPELLEAV 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G++  IVF  T+       + L +  F+  ++  + SQ  R  AL+  R G+  + 
Sbjct: 238 LREKGSERIIVFARTKNRTEDCAEALCDAGFRAESIHSDKSQGARRRALENFRRGKTSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+PD++ VI+ +L   PE+ +HR GRTGRAG KG ++  + +   R    
Sbjct: 298 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEKGYAISFVTRETSRTLRD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     + +    + E            DP  L   +G  ++            K +A
Sbjct: 358 IERLIGKDIPFMELETYEL-----------DPTLLKQKKGGARQGGSKSGGSKPYGKRSA 406

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           G          +  +          D  +D   A K         KGS  F       ++
Sbjct: 407 G---------KSYGKPAGKGGYRKSDDRKDGKPAGKSYAAEGGESKGSKRF-------ER 450

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR--TVKLDKGIQLKYL 536
           AEA           G +R + G                  D   +  + + +K     Y 
Sbjct: 451 AEAPR-----SGKGGFDRANAGK------------PGKRSDRSGKPASARGEKSFDKPYR 493

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            G KP  +     G  +         + ++ + A +
Sbjct: 494 EGGKPAKKQRSKKGNGTGGYDYSRFAKSEKHEAAER 529


>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 462

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
 gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 462

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha275]
          Length = 462

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|168236748|ref|ZP_02661806.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735725|ref|YP_002113911.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194711227|gb|ACF90448.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290147|gb|EDY29504.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 453

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
 gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
          Length = 441

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 123/392 (31%), Positives = 196/392 (50%), Gaps = 6/392 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+  +I +A+ + GY   T VQ   +   L   D++ SA TG+GKT AF L    
Sbjct: 2   SFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPALQ 61

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L  +  R    +  P  L + PTRELA Q+ + +              +GG+    + R
Sbjct: 62  RLTNKEHRVKKQNGKPSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVGGMPYEPQLR 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVV TPGRL D +  + +++S +  +VLDEAD MLD+GF D++  I   +P+ 
Sbjct: 122 ALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRMLDMGFVDEVNKIASFTPET 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    + +LA+   KD  R+ + S+  Q++      +      ++  ++++L
Sbjct: 182 RQTLLFSATWDNTMASLARRLLKDPERIQVESQVTQNNIEQRLHIADDFKHKNRLLLHVL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+   +   + L        AL G++ Q  R+  L  +R G+ R+ +
Sbjct: 242 DNEELTQAIIFSATKQGANDLAQELKAQGHSAAALHGDMKQGARNRTLMNLRRGKLRLLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G ++     +  R   R+
Sbjct: 302 ATDVAARGIDVTTVTHVINFDLPRFAEDYVHRIGRTGRAGAAGTAISFALPDDARHLARI 361

Query: 360 FREANVSVVWEPAPSVEAIR---ERDAQRILQ 388
            R   + V     P +E  R   +R  Q+  Q
Sbjct: 362 ERYTGIQVPQVIIPGLEPTRSLYQRRTQKKRQ 393


>gi|125623238|ref|YP_001031721.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492046|emb|CAL96974.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069989|gb|ADJ59389.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 551

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 240/505 (47%), Gaps = 41/505 (8%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I + L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVKTLTEIGYEQPTPIQEETIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + AEN       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKINAENP------AIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPADIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N       +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDP 413
            +  N  +     P+ E   +      + D L   S +  +       K    LL K D 
Sbjct: 355 EKLTNKEMKGLKPPTKEEAYQASLSVAMDDVLRDLSDESGKAKLAKFDKQAASLLEKFDA 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS---------------------------GRDRF 446
           +++ A  L+         EE+   +                               RD  
Sbjct: 415 KELVALLLQGRVKDPDNQEEVKITAERPLPYNGEGKGFKKKGKGGGGRYKGRGNGDRDGN 474

Query: 447 RDDSR-AFKVGGGSRDNFKGSSWFS 470
           RD +R  ++    S+D  +G     
Sbjct: 475 RDGNRGGYRGNRDSKDGERGGDRKR 499


>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 462

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
 gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
           14685]
          Length = 473

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|15611302|ref|NP_222953.1| ATP-dependent RNA helicase DeaD [Helicobacter pylori J99]
 gi|4154758|gb|AAD05818.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
          Length = 491

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 229/458 (50%), Gaps = 14/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +++ E G+ + + +QE  +   L+ +DV+  AQTG+GKT AF L + + L   +
Sbjct: 27  LKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINNLKNNH 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E+  L   T        GG SV ++   ++    
Sbjct: 87  T-------IKALVITPTRELAMQISDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + ++    K VVLDE+DEMLD+GF DDIE I D  P + ++L+FS
Sbjct: 140 VMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQILLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA    ++ ++++IA  N  ++DI  R  ++   +R  AI+ +L     + 
Sbjct: 200 ATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQAPEK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +IVF  T+       + LA   ++  AL G++ Q++R +++   +   A V +ATDVA+R
Sbjct: 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDVASR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V    L  N E+ +HR GRTGRAG+KGM++ ++     +   R+ +E +  
Sbjct: 320 GLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEIDSE 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +     P+   I E    + L D    + I    +++ ++     +P ++    L +   
Sbjct: 380 IELFEIPT---INENQIIKTLHDAKVSEGIISLYEQLTEI----FEPSQLVLKLLSLQFE 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                     +  +             K       +FK
Sbjct: 433 TSKIGLNQQEIDAIQNPKEKTPKPPNKKTQHEPAHSFK 470


>gi|225166117|ref|ZP_03727846.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224799638|gb|EEG18138.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 606

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 132/443 (29%), Positives = 215/443 (48%), Gaps = 10/443 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + G+   + +Q A++   L   DV+  + TGSGKT AF L     +    
Sbjct: 5   LSPELLKAVDKMGFEEASPIQAAVIPLLLAGSDVVGQSSTGSGKTAAFALPAIERVD--- 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +   A   L + PTRELAVQV  E+  L +    V+ V   GG S  R+ R L  GA
Sbjct: 62  ---TKLKAVQVLILCPTRELAVQVAEEVNKLASFKRGVMEVPIYGGQSYERQFRALAAGA 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ DH+    L +  L  V+LDE D MLD+GFRDDIE IL S P++R+ L F
Sbjct: 119 QVVIGTPGRVMDHMERGTLKLDKLSMVILDECDRMLDMGFRDDIEHILKSVPEQRQSLFF 178

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   +  +   V I ++ +    +D     V    +   +  ++  +  +
Sbjct: 179 SATMPREIRDMISRFIPNPAWVKIETQMQSAPQVDQVYFEVDRRSKLEVLTRLIDLNDFR 238

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FCST+  V    + L    +    L G+++Q +R+  ++  +       IATDVAA
Sbjct: 239 YGIIFCSTKIMVDELDENLHARGYACDRLHGDITQAQRTRTMEKFKRRGFEFLIATDVAA 298

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLE+V + +L ++ E+  HR GRTGRAGRKG +   +      + + + R A +
Sbjct: 299 RGLDVDDLEVVFNFDLPNDAEDYTHRIGRTGRAGRKGKAFTFVSGRELWKLQSMVRFARL 358

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAK-HDPEKIAAGFLR 422
            +  E  PS++ + E       +        +    + + +D LL + +    I A  L 
Sbjct: 359 DIRRERVPSLDQVEEARENVFFEKLRATLDAKKFCPQDRFIDRLLEQGYPSTDIIAALLH 418

Query: 423 IHRAGLCAPEEITPVSLVSGRDR 445
           + + G    +            R
Sbjct: 419 LMQGGGGGDKPAPSTVPAKSSAR 441



 Score = 61.9 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 441 SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIG 500
           S R +     RA + G        G +    +VG KQ      L+  +   + +    +G
Sbjct: 508 SSRPKKAKFERAARTGREP-----GFTPVFFNVGRKQLITPADLVGKVAGVTRLPAAVVG 562

Query: 501 AIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
           AI +    T  +++ + VDL+ + +    GI++K
Sbjct: 563 AIDIHQRHTLADIADEHVDLVVKKLT---GIRIK 593


>gi|194442237|ref|YP_002040055.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194400900|gb|ACF61122.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 453

 Score =  219 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|222054409|ref|YP_002536771.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221563698|gb|ACM19670.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 451

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 196/380 (51%), Gaps = 5/380 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++    +I +A++  GY   T +QE  +   L  KD++ SAQTG+GKT AF L    
Sbjct: 2   SFESLQLSPLILKAIAACGYTTPTPIQEQAIPLALEGKDLIASAQTGTGKTAAFTLPALE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +    P   P  L + PTRELA QV   +        V     +GG+    + + 
Sbjct: 62  RLSVRSPI--PGRGPRILVLTPTRELANQVTDAVRNYGKFIRVTSGAILGGMPYREQLQL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     ++V TPGRL DH+    +N+S L+ ++LDEAD MLD+GF +D++ I  ++P  R
Sbjct: 120 LSRPVDLIVATPGRLIDHLDRGRINLSRLELLILDEADRMLDMGFSEDVDRIAAAAPANR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + L+F+AT+   +  LA+   KD VR+ IA +   H  I+ R  +      +   + +++
Sbjct: 180 QTLLFTATMDDVMAKLAQRLLKDPVRIEIAGKKMTHEQIEQRLHVADNLQHKTRMLQHLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+       + L        AL G++SQ  R+  +  MR G+ R+ +
Sbjct: 240 ADGTVTKAIIFSATKRDADLLARDLHAQGHAAAALHGDMSQNARNKTIHNMRRGKIRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N     +R+
Sbjct: 300 ATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGATGIAISFASLNDLNYLDRI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R    ++     P +E  R
Sbjct: 360 ERYTGQTLPMHVIPGLEPTR 379


>gi|161614932|ref|YP_001588897.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230715|ref|ZP_02655773.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168820033|ref|ZP_02832033.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194471685|ref|ZP_03077669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|200390413|ref|ZP_03217024.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|161364296|gb|ABX68064.1| hypothetical protein SPAB_02686 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458049|gb|EDX46888.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|199602858|gb|EDZ01404.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205334823|gb|EDZ21587.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343118|gb|EDZ29882.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085093|emb|CBY94880.1| probable ATP-dependent RNA helicase DDX17 DEAD box protein 17;
           RNA-dependent helicase p72; DEAD box protein p72
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 454

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|56414080|ref|YP_151155.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167550495|ref|ZP_02344252.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|168240684|ref|ZP_02665616.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263681|ref|ZP_02685654.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466416|ref|ZP_02700278.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194451116|ref|YP_002044848.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363003|ref|YP_002142640.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198243732|ref|YP_002214783.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207856257|ref|YP_002242908.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|56128337|gb|AAV77843.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|194409420|gb|ACF69639.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|195631083|gb|EDX49669.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197094480|emb|CAR59997.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197938248|gb|ACH75581.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205324518|gb|EDZ12357.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205339744|gb|EDZ26508.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205347690|gb|EDZ34321.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206708060|emb|CAR32351.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322616296|gb|EFY13205.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619546|gb|EFY16421.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622758|gb|EFY19603.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628670|gb|EFY25457.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631607|gb|EFY28363.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637134|gb|EFY33837.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641666|gb|EFY38302.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644539|gb|EFY41079.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322654208|gb|EFY50531.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658123|gb|EFY54390.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663597|gb|EFY59799.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670333|gb|EFY66473.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671569|gb|EFY67691.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676925|gb|EFY72992.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682850|gb|EFY78869.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686529|gb|EFY82511.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194574|gb|EFZ79767.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199095|gb|EFZ84191.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202050|gb|EFZ87109.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208924|gb|EFZ93861.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213909|gb|EFZ98679.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215239|gb|EFZ99984.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220842|gb|EGA05280.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227299|gb|EGA11467.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229917|gb|EGA14040.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233142|gb|EGA17238.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240877|gb|EGA24919.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243194|gb|EGA27214.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248733|gb|EGA32661.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251737|gb|EGA35604.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323261448|gb|EGA45029.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267879|gb|EGA51358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|326622538|gb|EGE28883.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 453

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|16759741|ref|NP_455358.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142486|ref|NP_805828.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163843|ref|ZP_03349553.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424785|ref|ZP_03357535.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213854569|ref|ZP_03382809.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385229|pir||AI0599 probable ATP-dependent RNA helicase rhlE STY0855 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502034|emb|CAD05267.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138117|gb|AAO69688.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 455

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|121635074|ref|YP_975319.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 462

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 536

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLGLEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N      +   AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDVDN------TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   Q  L+    ++    DEK   +      D  K+AA 
Sbjct: 355 ENLTKKRMKGMKPATAEEAFQAKKQVALKK---IERDFEDEKIRTNFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|311032368|ref|ZP_07710458.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. m3-13]
          Length = 481

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 147/533 (27%), Positives = 242/533 (45%), Gaps = 68/533 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL    Y+  T+VQE ++   L + D++V +QTGSGKT AF + L   +  E
Sbjct: 9   NLGEDIVKALKSLNYLKPTNVQEEVIPKALAKSDIIVKSQTGSGKTAAFAVPLCDLVHWE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++      P AL + PTRELA QV  ++  +     V      G  S  R++ +L+  +
Sbjct: 69  ENK------PQALVLTPTRELAAQVKDDITNIGRYKRVKATAIYGKQSFQRQKLELKQKS 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L++S L+ +V+DEADEML++GF D +E I+   PK R  ++F
Sbjct: 123 HIVVGTPGRVLDHLEKGTLDVSRLEYLVIDEADEMLNMGFIDQVESIIQMLPKSRVTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  L+  Y  + V + I S       I++    +     +   + +I      
Sbjct: 183 SATLPEDIKQLSNQYMTNPVFIEIESGGLTTDRIEHIWYEVGEGEKKFLLLKDITVVENP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVFC+T+  V +  + L    +    L G L Q++R + +   + G  R  IATDVA
Sbjct: 243 DSCIVFCATQEEVDKVHRNLHRAGYPCGKLHGGLVQEDRFSVMNAFKRGEFRYLIATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RGID+ D+ LVI+ ++ S+ E  +HR GRT RAG+ G ++ +I  +     E +     
Sbjct: 303 SRGIDIEDISLVINYDIPSDKERFVHRIGRTARAGKSGKAITLISTSEHHHLEEIEDFIG 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           + +    AP  EA+                                              
Sbjct: 363 IKISRAEAPKREAVAR-------------------------------------------A 379

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                   E  P+   +   +   +       GG +   +   +    VG          
Sbjct: 380 ETSFLVKLENRPIKKENKGAKLEQNIMKLYFNGGKKKKIRAVDF----VG---------- 425

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              +C+ +G+  + IG I +Q + T+V++      L+ + +K    KG QLK 
Sbjct: 426 --TICQINGVTSEDIGIITIQENHTYVDILNGKGSLVLKEMKNRTVKGKQLKV 476


>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
          Length = 522

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/463 (31%), Positives = 245/463 (52%), Gaps = 16/463 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I +A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  +N+         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIDIDNNVI------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P +
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISHVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++     +++   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   ++  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G SV  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD--AQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +   +PA + +A + +   A + ++     +SI+ +  K     L    +  P
Sbjct: 355 ENLTKKRMKGLKPASAQDAFQAKKAVALKKIERDFSDESIRSNFDKFKGDALKLAEEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           E++A   L +    +  PE +  V +   R      S A +  
Sbjct: 415 EELALYILSLT---VQDPETMPEVEISRERPLPFKPSGANRGD 454


>gi|205352078|ref|YP_002225879.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271859|emb|CAR36694.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627120|gb|EGE33463.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 453

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++     N+ R  E+L ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHNLLRDIEKLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
              +    +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|126665223|ref|ZP_01736206.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
 gi|126630593|gb|EBA01208.1| ATP-dependent RNA helicase DeaD [Marinobacter sp. ELB17]
          Length = 504

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 228/470 (48%), Gaps = 18/470 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA++  GY   T +Q   +   L  + +L  AQTG+GKT AF L L S +    
Sbjct: 11  LNPAVLEAVTAVGYETPTPIQAQSIPALLSGRHLLGVAQTGTGKTAAFALPLLSRVDPN- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 +AP  L +APTRELA+QV        +K      +   GG     + + L+ GA
Sbjct: 70  -----VNAPQILVLAPTRELAIQVAEAFSTYASKLPNFHVLPIYGGQDFFPQIKGLRRGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++VGTPGR+ DH+R   L + +LKA+VLDEADEML +GF DD+E IL  +P   +  +F
Sbjct: 125 HVIVGTPGRMLDHLRKGTLKLDNLKALVLDEADEMLRMGFIDDVEAILSKTPDNCQRALF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y KDAV V I S +R    I    + V    + +A+  IL      
Sbjct: 185 SATMPPQIKKVAQTYLKDAVEVRIESASRTVDAISQYVLPVYAERKLDALTRILEVEPFD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  T+A      + LA        L+G+L+Q++R   ++ ++ G+  + +ATDVAA
Sbjct: 245 ASIIFVRTKAETIVLAEKLAARGHAAAPLNGDLNQRQREQTVEDLKRGKKDIVVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  VI+ ++  + E  +HR GRTGRAGR G ++ ++    +     L R  N 
Sbjct: 305 RGLDVPRITHVINYDVPYDTEAYIHRIGRTGRAGRDGKAILLVTPRERSWLRTLERATNA 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLAKHDPEKIAAGFL 421
           ++     PS  A+++    +     +     +   K M          + D   +A    
Sbjct: 365 TMEAYELPSPAALQKMRVDQFESQLVGFAEDRKLSKAMAMLDDIAERNEMDITMVAGALA 424

Query: 422 RIHRA------GLCAPEEITPVSLV-SGRDRFRDDSRAFKVGGGSRDNFK 464
            +  A       L  PE +  VS     RDR       F+ G       K
Sbjct: 425 CMLEATQPGSLPLEQPEALPAVSTTQPNRDRKAGRPGEFRKGPKPGSYNK 474


>gi|325108112|ref|YP_004269180.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324968380|gb|ADY59158.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 475

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 194/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   I  A+  + Y   T +Q   +   L  +D+L SAQTG+GKT AF L +
Sbjct: 1   MNSFSDLNLIAPIQRAIKAQNYTTPTPIQAQTIPEILNGRDILGSAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +N R  P + P  L + PTRELA+QVG           V  A+  GGV+  R+ 
Sbjct: 61  LDYLGRQNRRPIP-NEPTVLVLVPTRELAIQVGDSFATYGRHLRVRHALIYGGVNQFRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G HI+V TPGRL D +    +++S L+   +DEAD M+D+GF  D++ I+   P+
Sbjct: 120 RDLNRGVHILVATPGRLLDLMNQGHIDLSRLELFAVDEADRMMDMGFLPDLKKIIREIPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+ P I  L++    D V V I  E R    I+   + V    + + +++I
Sbjct: 180 ERQSLFFSATLPPKINELSRELLTDPVSVTIDPEVRSVEAIEQSLIYVDQQSKKDLLLDI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G    +VF  T+   +R  + L +     +A+ G  SQ  R  AL   R+ + +V 
Sbjct: 240 LNEEGIGQTVVFTKTKFCANRLEEQLRKSGVSAIAIHGNKSQNARQKALLAFRNEKVKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ EL   PE+ +HR GRTGRAG  G+++       +     
Sbjct: 300 VATDVAARGIDVDGVTHVINFELPHEPESYVHRIGRTGRAGASGIAISFCSNAERAELRA 359

Query: 359 LFREANVSVV 368
           + R+    V 
Sbjct: 360 IERQIEQKVP 369


>gi|197247942|ref|YP_002145775.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211645|gb|ACH49042.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 453

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|126738873|ref|ZP_01754569.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126720054|gb|EBA16761.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 463

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 242/401 (60%), Positives = 307/401 (76%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q +  AL  RGY +LT VQEA+ +PDL   D+LVSAQTGSGKTV FGLA+A T+L E
Sbjct: 32  ELKQTLSLALERRGYTSLTPVQEAVTDPDLGTGDLLVSAQTGSGKTVGFGLAIADTVLGE 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +DRF+ A+APLAL IAPTRELA+QV REL WLY + G VVA C+GG+ +  ERR L  GA
Sbjct: 92  DDRFAAAAAPLALVIAPTRELALQVKRELAWLYGEAGAVVASCVGGMDMRDERRALDRGA 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VV TPGRL DHI    +++S L+AVVLDEADEMLDLGFR+D+EFIL  +P++R+ L+F
Sbjct: 152 HLVVATPGRLRDHIMRGSIDLSDLRAVVLDEADEMLDLGFREDLEFILGEAPEERQTLLF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ PAI  LA++YQ+DA R++  +E  QHSDIDY+A+LV+  D DNAI+N+LR++ A 
Sbjct: 212 SATVPPAIEHLARSYQRDAKRISTVAETSQHSDIDYQAMLVSQRDGDNAIINVLRFYEAP 271

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           NAIVFC+TRA V+R    L+   F VVALSGELSQ ERS+ALQ MRDGRARVC+ATDVAA
Sbjct: 272 NAIVFCNTRAMVNRLLSRLSNRGFAVVALSGELSQAERSHALQAMRDGRARVCVATDVAA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGIDLP+LELVIHAEL S+ E LLHRSGRTGRAGRKG+S  V+    +++AERL + A +
Sbjct: 332 RGIDLPNLELVIHAELPSSHETLLHRSGRTGRAGRKGVSALVVSPKSRKKAERLLKMAKL 391

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
              W  APS EA+R +D +R+L DP + +     E++M+  
Sbjct: 392 HANWGGAPSAEAVRSKDTERMLNDPSWTEDQSSGEEEMIAQ 432


>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 515

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 139/482 (28%), Positives = 219/482 (45%), Gaps = 15/482 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   I +AL E G+   + +Q+  +   L   DV+  A TG+GKT AFGL     
Sbjct: 13  FEQFGLKAPILQALQEAGFKIASPIQKQAIPVVLAGHDVVAQAHTGTGKTAAFGLPALHL 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +               L + PTRELA QV  EL  L    G+  A   GG S   +   L
Sbjct: 73  IHDNP-------GSQLLVLTPTRELASQVSDELFRLGRHLGIRTATICGGKSFRPQIEAL 125

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  ++V TPGRL D +    L       VVLDEADEMLD+GF + I+ I    P KR+
Sbjct: 126 QRGVQVIVATPGRLQDLLESDSLPDFRPAIVVLDEADEMLDMGFLEAIQRIFTFLPAKRQ 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+  AI  LA    K  + +++  +   + DI     ++   +RD+AI+ +L  
Sbjct: 186 TLLFSATMPSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILRLLDS 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC T+  V R +  L  + +    L G++ Q +R   ++  R  + RV +AT
Sbjct: 246 EEPAKSIIFCRTKKDVDRLSTTLVANGYHARGLHGDMEQPQREEVIRHFRSEQIRVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ + D+  V +  L  +P + +HR GRTGRAG KG++   +     R  +R  +
Sbjct: 306 DVAARGLSVSDVSHVFNYHLPFDPASYVHRIGRTGRAGNKGVASTFVTLREWREFQRYEK 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +  E  P++E +++   Q+++      +     E ++V  L+ + D   + + F+
Sbjct: 366 VTGAPINREIIPTLEDVKKLKRQKLV--SRIQNQPLHQETELVLELMKEVDHSTLVSKFI 423

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                               G++R     R  K     R   +    F    G     + 
Sbjct: 424 SFVLEQETIQGPDRIGVEPRGQERDTRGQRTDKFNDERRRANRPQQKF----GKANGFKK 479

Query: 482 RW 483
             
Sbjct: 480 EH 481


>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 453

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY N T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   V +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  +
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYID 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLNEVTVEGMEPTRKRK 384


>gi|15677233|ref|NP_274386.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
 gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 462

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|238913888|ref|ZP_04657725.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 455

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|325977801|ref|YP_004287517.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 526

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 144/465 (30%), Positives = 232/465 (49%), Gaps = 10/465 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +          +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNR------NLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   E    +       ++    DE    +    K D  K+AA 
Sbjct: 355 EKLTKKRMKGLKPATAD---EAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           F     A       +     +   +  R+    FK  GG  +N K
Sbjct: 412 FTPEELALYILNLTVKDPDTLPKVEIAREKPLPFKPSGGGFNNRK 456


>gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
          Length = 462

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|296271676|ref|YP_003654307.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095851|gb|ADG91801.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 488

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 127/423 (30%), Positives = 215/423 (50%), Gaps = 11/423 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N  + +  A+ + G+   + +Q+  +   L  KD++  AQTG+GKT AFGL + +
Sbjct: 3   FKDF-NFKENLQRAIEDAGFKEPSPIQQDAIPVVLSGKDMVGQAQTGTGKTAAFGLPMIN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +          S   A+ I PTRELA+QV  EL      +G+  A   GG S + + R+
Sbjct: 62  MMNGN-------SGVEAVVIVPTRELAMQVSDELFRFGKSSGMNTATVYGGQSYNMQLRN 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +   + IV      +      K         VVLDEADEMLD+GF DDI+ I    PK+R
Sbjct: 115 IDRASIIVATPGRLIDLLKGKKID--IKPSFVVLDEADEMLDMGFLDDIKEIFTYLPKER 172

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ PAI  LA+N  K+   + +      +S I     +V   +RD+A++ +  
Sbjct: 173 QTLLFSATMPPAIKKLAQNILKEPEFITVTKAEMTNSKITQLFYVVDEYERDDALIRLFD 232

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   + +I+FC T+  V R +  L         L G++ Q++R   ++  + G   V IA
Sbjct: 233 FKNPEKSIIFCRTKKEVDRLSTYLVSQGHMAKGLHGDMEQRQREEVIRSFKKGALDVLIA 292

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D+  V +  L  + E+ +HR GRTGRAG++G+++ ++  +  R  +++ 
Sbjct: 293 TDVAARGLDVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAISIVTPHEFRMIQKIQ 352

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +  +  P++++++E+     L+  +    +      +V+ L  + D   IA   
Sbjct: 353 HVTGGKMEAKVIPNIDSVKEKKTS-TLRGKISEQKVYDSGISLVESLKEEFDLSTIAFKL 411

Query: 421 LRI 423
             I
Sbjct: 412 ASI 414


>gi|260102329|ref|ZP_05752566.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|260083862|gb|EEW67982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           helveticus DSM 20075]
 gi|328463453|gb|EGF35104.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus MTCC
           5463]
          Length = 503

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 222/445 (49%), Gaps = 6/445 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++  +           A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QSIDKKEKAIQAII--QAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIR 118

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              Q+   I+VGTPGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL  +  
Sbjct: 119 SLKQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKN 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT+   I  + + + KD   V I ++      ID   V    S++ + +  +
Sbjct: 179 CKQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 239 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 299 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 358

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+R +  Q   +    +    G   +    LL  +    + 
Sbjct: 359 IEQLTKKKMSPISLPTDDQALRGQLKQAKAEIEDLMKGDLGKYTQDASELLDNYSALDLV 418

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVS 441
           A FL+ + +       +ITP   +S
Sbjct: 419 AAFLKNLAKDSTDIKVKITPEKPLS 443


>gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 479

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 229/474 (48%), Gaps = 14/474 (2%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   F N+       + L   G+   T +Q   +   L   D++  +QTG+GKT A+ L 
Sbjct: 1   MTTGFNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  +N          AL + PTRELA QV   ++       + +    GG S+ R+
Sbjct: 61  LLERMDTKNPNV------QALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L++  L  VVLDEADEML +GF DD++ IL +SP
Sbjct: 115 IRSLEKGVQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+   FSAT+   I  L  N+ K  + V ++      + I+ +  ++        ++ 
Sbjct: 175 STRQTACFSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYMIPRGWTKLKVLQ 234

Query: 238 ILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L      ++AI+F  T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ +
Sbjct: 235 PLLEIEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ ++    +R  
Sbjct: 295 LVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLL 354

Query: 357 ERLFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++ +     +   P PS   VEA R    Q  L++ L  + +      +V  L  ++DP
Sbjct: 355 RQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDP 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           + IAA  L++     C     T   + +        ++  + GG    +   + 
Sbjct: 414 QAIAAAALQMIYDQNCPQWMKTDWEVPAATSSKPVINKTPRSGGSKYPSKSNNR 467


>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
 gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
           NJ9703]
          Length = 469

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
 gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
          Length = 432

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 2/371 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I +AL + GY + T +QE  +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +           AL + PTRELA+Q+G         TG+   V  GGV   ++ + 
Sbjct: 62  QIHNDRQSNDRHRKIKALVVTPTRELAIQIGESFTAYGKFTGIRNTVIFGGVKQGKQTQA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  I++ TPGRL D +    +++  ++  VLDEAD+MLD+GF  DI  I+   P KR
Sbjct: 122 LKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQMLDMGFIHDIRKIIAKLPPKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  L++    D  RV I  E      ++     V  S++   +V++L 
Sbjct: 182 QSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKSNKVKLLVHLLE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+   ++  K L +      A+ G  SQ  R  AL   + G  +V IA
Sbjct: 242 NRPNSSVLVFSRTKHGANKIVKKLGQADIASAAIHGNKSQTARQKALGDFKAGELKVLIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ DL LV++ +L + PE  +HR GRTGRA   G+++    ++ Q     + 
Sbjct: 302 TDIAARGIDVDDLALVVNFDLPNVPETYVHRIGRTGRASASGIAISFCDRDEQPYLRDIE 361

Query: 361 REANVSVVWEP 371
           +     V   P
Sbjct: 362 KLIKQQVPRMP 372


>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP-6]
 gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP-6]
          Length = 427

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 188/366 (51%), Gaps = 1/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  A++  GY   T +Q   + P L  KD+L  AQTG+GKT AF L +   + AE
Sbjct: 7   NIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQRMSAE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S   +P  L +APTRELA Q+G+              V  GGV    +   L  G 
Sbjct: 67  R-RASRPGSPRVLVLAPTRELAAQIGQSFATYGKFLRFRQLVIFGGVRQGPQVNMLSRGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +  ++  VLDE D MLD+GF  D++ I+ + P+K   L F
Sbjct: 126 DILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRMLDMGFIRDVKRIVSALPEKHSSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++     LA++   D V V  +        ID +   V  + +++ ++++L     K
Sbjct: 186 SATLTRETGELAQSLLNDPVHVQASPSACTLDSIDQQVFFVDQNSKNSLLLDLLLKEDMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  ++L+++  Q  A+ G  SQ +R+  ++  R GR RV +ATD+AA
Sbjct: 246 RVLVFARTKHRADKVAQMLSKNRIQSDAIHGNKSQNQRTKTMERFRSGRIRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+  V++ +L + PE+ +HR GRTGRAG  G +        +   + + R    
Sbjct: 306 RGIDIDDITHVVNYDLPNEPESYVHRIGRTGRAGASGNAFSFCSAEERSFLKDIERLTRE 365

Query: 366 SVVWEP 371
            +    
Sbjct: 366 KIEERE 371


>gi|330817865|ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 212/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNSQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y  +   + +A  N   +++      +A  D+  A+V +
Sbjct: 192 QRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEVEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +P      +R R 
Sbjct: 372 IEKLIKRDLPLQPLAVDAPVRARQ 395


>gi|218768385|ref|YP_002342897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
          Length = 462

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P+ R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPEDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDADI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
 gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
          Length = 509

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 66  LNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLIQNE 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 126 PHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 185

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 186 ILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 245

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 246 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 305

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 306 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 365

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 366 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 425

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 426 IPRIAIAGYEPDPSIKA 442


>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 519

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 76  LNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLIQNE 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 136 PHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 195

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 196 ILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 255

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 256 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 315

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 316 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 375

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 376 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 435

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 436 IPRIAIAGYEPDPSIKA 452


>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 515

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/422 (29%), Positives = 214/422 (50%), Gaps = 10/422 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+    + +   + E G+   + +Q+  +   L   D++  AQTG+GKT AFGL L + 
Sbjct: 16  FESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLINN 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +        +   L + PTRELA+QV  E+  L     V      GG  + R+   L
Sbjct: 76  LKNDG-------SIEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    +++ TPGRL DH+R + L   +   VVLDE+DEMLD+GF DDIE I       R+
Sbjct: 129 EKKPQVIIATPGRLLDHLRNERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQ 188

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA+    +   + I  ++  + DI  R  ++   +R++AIV ++  
Sbjct: 189 TLLFSATMPTPIKHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRLIDS 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AI+F   +      ++ L    F+  AL G++ Q+ER  +++  +D    + +AT
Sbjct: 249 EMPQKAIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  +  V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   R+  
Sbjct: 309 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKE 368

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               S+     PS++   ++    IL D +   +I  D  ++ + +    D  ++    L
Sbjct: 369 NTKASIELYEIPSIQDTMDKKDSNIL-DKILKHAISDDALRVYEQIRGNADITQLVCKLL 427

Query: 422 RI 423
            +
Sbjct: 428 SM 429


>gi|224582633|ref|YP_002636431.1| ATP-dependent RNA helicase rhlE [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467160|gb|ACN44990.1| putative ATP-dependent RNA helicase rhlE [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 488

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 455

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSLLIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDLRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 451

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLIQNE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|253999447|ref|YP_003051510.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253986126|gb|ACT50983.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 468

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 139/465 (29%), Positives = 211/465 (45%), Gaps = 9/465 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I  AL E GY   T +Q   +   L   D++ SAQTG+GKT AF L   +
Sbjct: 4   TFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +   S +  P  L + PTRELA QV                  +GG+    + + 
Sbjct: 64  LLADIHP--SKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKL 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I ++ P++R
Sbjct: 122 LSQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + LMFSAT    I  +AK   KD   + IA++  +H++I+ R      ++ ++  + ++L
Sbjct: 182 QTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF ST+       + L     +  AL G+++Q  R+  L  +R G  RV +
Sbjct: 242 IAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V       + +  ++
Sbjct: 302 ATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRKI 361

Query: 360 FREANVSVVWEPAPSVE----AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +     +        E    A R  D     +        +   K       A ++P  
Sbjct: 362 EQYTGQRIEITVIEGFEPKRPAPRSDDRGSNGRPRSGNPGSKSGFKPRGQGGYAGNNPRS 421

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            +         G     E        G D+F    RA        
Sbjct: 422 ASGAGNSEGNRGFGGRSEGNRSEGNRGNDKFGGQKRADAPRRPRN 466


>gi|253572829|ref|ZP_04850228.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|251837561|gb|EES65653.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 197/368 (53%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  +   L +KD+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N      S   AL + PTRELA+Q+   +E     T +   V  GGV+   +  
Sbjct: 61  QHL-HLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    + + +++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I  L  +  K+ +++ +  ++     I      V   ++   +++IL
Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L LVI+ +L   PE  +HR GRTGRAG  GM++    Q  +++   +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
 gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
          Length = 447

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLVTHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKSLAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|329114670|ref|ZP_08243429.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326696150|gb|EGE47832.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 637

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 134/481 (27%), Positives = 219/481 (45%), Gaps = 16/481 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  A+S+ GY + T +Q   +   L  +DV+  AQTG+GKT +F L +  
Sbjct: 154 TFADLELSEPLLRAISDMGYTHPTPIQAQAIPAILMARDVMGVAQTGTGKTASFTLPMLE 213

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D  + A  P +L + PTRELA+QV            +  A+ IGG S+  ++  
Sbjct: 214 IL---ADSRARARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMADQKEV 270

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D     GL ++H   +V+DEAD MLD+GF  DIE I+   P  R
Sbjct: 271 LNRGVDVLIATPGRLLDLFERGGLMLNHTGILVIDEADRMLDMGFIPDIEKIVGLLPPNR 330

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++P I  LA  +      + +A ++   + I    V+V    +   +  +L+
Sbjct: 331 QTLLFSATMAPTIRKLADTFLHSPKEITVARQSSVATTITTGIVVVDEYSKRETLRQLLK 390

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NAIVFC+ +  V   TK L +H F   AL G+L Q  R + L+  ++   +V + 
Sbjct: 391 DPALQNAIVFCNRKRDVDILTKSLVKHGFSAAALHGDLPQSVRFSTLEKFKNDELKVLVC 450

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + +L  + E+ +HR GRTGRAGR+G +  +     +  AE + 
Sbjct: 451 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGREGHAYSIATPYDKALAEAIE 510

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +     +       V+ +   D +R            G  +K       +    +  A  
Sbjct: 511 KLTGKEIPRMALDGVKQLEWSDEKR---------PPAGRTRKPHTPQRNR--ERENPAPA 559

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            R  +      ++         R+            GG    F       + +  +    
Sbjct: 560 AREQQQPEAKLQQTARPERQPTRNTRHQRDEIPPAPGGDVQGFGDMVPAFMLLPRRNSVR 619

Query: 481 A 481
            
Sbjct: 620 P 620


>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
 gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 456

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 193/383 (50%), Gaps = 8/383 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L  
Sbjct: 2   SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +          AL + PTRELA Q+G  +E       +   V  GGVS++ +   
Sbjct: 62  LLSKHDHAVKGRRPVRALILTPTRELAAQIGENVESYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +A  N     I+     V    +   +  ++ 
Sbjct: 182 QNLLFSATFSDDIKGLANKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +A
Sbjct: 242 EGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP PS++A
Sbjct: 362 RLLKREIPRIALPGYEPDPSIKA 384


>gi|325291138|ref|YP_004267319.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966539|gb|ADY57318.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 518

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 223/470 (47%), Gaps = 10/470 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I +A ++ G+   T +QE  +   +  +D++  AQTG+GKT AF + +
Sbjct: 1   MSTFFDMGLSNFIIKATADMGFEEATPIQEKTIPVAMAGRDIIGQAQTGTGKTAAFAIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    +          L + PTRELAVQV  E+  +    G+      GG  ++R+ 
Sbjct: 61  IENLERHAEGIG------GLVVTPTRELAVQVAEEINKIGQFKGIHAQPIYGGQDINRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+N   I+VGTPGRL DH+R   + + H+   VLDEADEML +GF +DIE IL     
Sbjct: 115 RALRNRPQIIVGTPGRLMDHMRRHTIRLDHVSMAVLDEADEMLSMGFIEDIESILGEIQH 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L+FSAT+  +I  L+K +  +   ++I ++     + +   V +    + + +  +
Sbjct: 175 KHQTLLFSATMPQSILNLSKRFMLEPEFISIKAKEVTVPNTEQYYVELPERQKFDVLCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V    + L +  +    + G+L+Q  R + L+  ++G   + 
Sbjct: 235 LDIQSPDLAIVFGRTKRRVDELYEALNKRGYSAEGIHGDLTQLRRDSVLRHFKEGVTDIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  + + ++  +PE+ +HR GRTGRAG+ G++V  +          
Sbjct: 295 VATDVAARGLDISGVTHIYNFDIPQDPESYVHRIGRTGRAGKTGLAVTFVTPRELNHLRL 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     +V +P P++  + E   Q+ L   L + + +  E +    L  +      + 
Sbjct: 355 IEQVTKRRIVRKPMPTIHEVLEG--QQRLAVDLLMKASEDPESRRYTELADELLASNDST 412

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             L      L      TPVSL      +    R  K    S       + 
Sbjct: 413 ALLAAALKLLTKEPNTTPVSLTEEAPVYSRTPRYEKSRQPSHYQRNRRNR 462


>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
 gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
          Length = 530

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 143/461 (31%), Positives = 231/461 (50%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +  +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKID------TSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKQGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   E    +       ++    DEK        K D  K+AA 
Sbjct: 355 EKLTKKRMKGLKPATAD---EAFKAKKKVALKKIERDFADEKIRNSFDKFKGDAVKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  GG  
Sbjct: 412 FTPEELALYILSLTVKDPETLPKVEIAREKPLPFKPSGGGF 452


>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
 gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
          Length = 479

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 229/474 (48%), Gaps = 14/474 (2%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   F N+       + L   G+   T +Q   +   L   D++  +QTG+GKT A+ L 
Sbjct: 1   MTTGFNNLGLSDSRLQHLETLGFTTPTEIQTKAIPLLLEGHDMVGMSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  +N          AL + PTRELA QV   ++       + +    GG S+ R+
Sbjct: 61  LLERMDTKNPNV------QALILTPTRELAQQVASAIKDFSDDRRLFILTVCGGQSMERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L++  L  VVLDEADEML +GF DD++ IL +SP
Sbjct: 115 IRSLEKGVQIVVGTPGRVIDLLDRKKLHLESLNWVVLDEADEMLSMGFIDDVKKILQASP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+   FSAT+   I  L  N+ K  + V ++      + I+ +  L+        ++ 
Sbjct: 175 STRQTACFSATMPREIRDLIANFLKSPISVTVSQPQAAPAKIEQKIYLIPRGWTKLKVLQ 234

Query: 238 ILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L      ++AI+F  T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ +
Sbjct: 235 PLLEIEPLESAIIFVRTKQTAAELTSKLQEAGQTVDEYHGNLSQVQRERLVQRFREGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ +L  VI+ +L  N E  +HR GRTGRAG+ G ++ ++    +R  
Sbjct: 295 LVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRLL 354

Query: 357 ERLFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++ +     +   P PS   VEA R    Q  L++ L  + +      +V  L  ++DP
Sbjct: 355 RQIEQRLRQRLESSPIPSRTEVEAKRLAKLQNQLKEALSGERM-ASFLPLVRDLSEEYDP 413

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           + IAA  L++     C     T   + +        ++  + GG    +   + 
Sbjct: 414 QAIAAAALQMIYDQNCPQWMKTDWEVPAATSSKPVINKTPRSGGSKYPSKSNNR 467


>gi|161506849|ref|YP_001576803.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
 gi|160347838|gb|ABX26512.1| putative ATP-dependent RNA helicase [Lactobacillus helveticus DPC
           4571]
          Length = 503

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 222/445 (49%), Gaps = 6/445 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +A+   G+   T +QE  +   L+ KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLNDALLKAIKRSGFEEATPIQEQTIPLALQGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++  +           A+ I PTRELA+Q   EL  L       V V  GG  + R+ R
Sbjct: 61  QSIDKKEKAIQAII--QAIIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIRRQIR 118

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              Q+   I+VGTPGRL DH++   +++  +  VVLDEADEMLD+GF  DIE IL  +  
Sbjct: 119 SLKQHAPSILVGTPGRLLDHLKRGTIDLDKVNTVVLDEADEMLDMGFIKDIESILKYAKN 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT+   I  + + + KD   V I ++      ID   V    S++ + +  +
Sbjct: 179 CKQTLLFSATMPKPILRIGEKFMKDPAIVQIKAKELTADLIDQYFVRAKESEKFDIMCRL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF  T+  V   T+ L    +    + G+LSQ  R   L+  R+G+  + 
Sbjct: 239 IDVQGPDLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQARRMAVLKRFREGKLDIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +P++ +HR GRTGRAG+ G+SV  +  N       
Sbjct: 299 VATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGVSVTFVTPNEIGYMRT 358

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     +     P+ + A+R +  Q   +    +    G   +    LL  +    + 
Sbjct: 359 IEQLTKKKMSPIHLPTDDQALRGQLKQAKAEIEDLMKGDLGKYTQDASELLDNYSALDLV 418

Query: 418 AGFLR-IHRAGLCAPEEITPVSLVS 441
           A FL+ + +       +ITP   +S
Sbjct: 419 AAFLKNLAKDSTDIKVKITPEKPLS 443


>gi|120555341|ref|YP_959692.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120325190|gb|ABM19505.1| ATP-dependent RNA helicase CsdA [Marinobacter aquaeolei VT8]
          Length = 528

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 228/470 (48%), Gaps = 12/470 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA+S  GY   + +Q   +   L    +L  AQTG+GKT AF L L S + A  
Sbjct: 31  LDPAVLEAVSAVGYETPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFALPLLSRIDAN- 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 + P  L +APTRELA+QV        +K      +   GG     + R L+ GA
Sbjct: 90  -----VAEPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFSPQIRGLKRGA 144

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P   +  +F
Sbjct: 145 QVIVGTPGRMLDHLRKGTLKLDGLKALVLDEADEMLRMGFIDDVEAILAKTPDTCQRALF 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y K+A  V I SE R    I    + V    + +A+  IL      
Sbjct: 205 SATMPPQIKKVAQTYLKNATEVRIESETRTVERIAQFVLPVYAERKLDALTRILEVEPFD 264

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  T+A  +   + L+     V  LSG+L+Q++R   ++ ++ G+  + IATDVAA
Sbjct: 265 ASIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAA 324

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  VI+ ++  + E  +HR GRTGRAGR G ++ ++    +     L R  N 
Sbjct: 325 RGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLRTLERATNS 384

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
            +     PS  A+++   ++     L F D  +  +   +   +A+ +   +AA    + 
Sbjct: 385 PMEPYQLPSPAALQKMRVEQFEAQLLGFTDDPRAAKAIALLDEIAERNDMDMAAIAGAMA 444

Query: 425 RAGLCAPEEITPVSLVSGRDR----FRDDSRAFKVGGGSRDNFKGSSWFS 470
                +  +  P+             R D +    G G          FS
Sbjct: 445 CLLEASQPDSLPLEQPEALPEISAAPRRDRKGPPPGKGGFRKGGPGKKFS 494


>gi|333007150|gb|EGK26642.1| putative ATP-dependent RNA helicase rhlE [Shigella flexneri K-218]
          Length = 406

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 195/387 (50%), Gaps = 8/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + + +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   + VA+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSVAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNHELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA--IRERDAQR 385
           +       +EP PS++A  I+    QR
Sbjct: 368 IPRIAIPGYEPDPSIKAEPIQNGRQQR 394


>gi|226947893|ref|YP_002802984.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
 gi|226840806|gb|ACO83472.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A2 str.
           Kyoto]
          Length = 425

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 129/402 (32%), Positives = 210/402 (52%), Gaps = 8/402 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   P+ R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPRGR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +     ++ +  P VE       + I +D +  ++ + +  K
Sbjct: 362 K-----LIHKEIPVVED-HPYKIRHINEDEVKKENTKNNYNK 397


>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 420

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 202/392 (51%), Gaps = 7/392 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   Q +   + + G+   T +QE  +   L  KDVL  AQTG+GKT AFGL L
Sbjct: 1   MSSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + LL +     P ++  LAL + PTRELA QV   L    +   + +    GG S++ +
Sbjct: 61  LNKLLDQEASRDPQSNDVLALVVVPTRELAQQVFDSLTAYASAAEIKIVTAYGGTSMNVQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L+ G  +++ TPGRL DH+  K +N+     +VLDEAD MLD+GF  DI+ IL    
Sbjct: 121 TQNLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLN 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L FSAT    I T+A     + V V +   N     +      V    +   +  
Sbjct: 181 PERQTLFFSATFDKRIKTIAHKLMNEPVEVQVTPSNSTAEKVKQMVYPVDKKRKAELLAY 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  +VF  T+       K L     +  +++G+ SQ  R  AL   + G  R 
Sbjct: 241 LIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGTIRA 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  LE V++ ++    E+ +HR GRTGRAG++G++V ++ ++ +   E
Sbjct: 301 LIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLE 360

Query: 358 RLFREANVSVVWEPA----PSVEAIRERDAQR 385
            + R  +  +  E      PS+E   E + +R
Sbjct: 361 AIERLLDARLPQEWLQGFEPSIEEPTENERER 392


>gi|154684961|ref|YP_001420122.1| YdbR [Bacillus amyloliquefaciens FZB42]
 gi|154350812|gb|ABS72891.1| YdbR [Bacillus amyloliquefaciens FZB42]
          Length = 511

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 222/459 (48%), Gaps = 14/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L  
Sbjct: 21  TFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 81  KMNPESPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P   
Sbjct: 135 LKKNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDH 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L 
Sbjct: 195 QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLD 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +A
Sbjct: 255 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + 
Sbjct: 315 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIE 374

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +        ++           LL  HD   + A
Sbjct: 375 QTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDHDAVTVVA 434

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +++         + TPV L           +  +   
Sbjct: 435 AAIKMA----TKEPDSTPVRLTDEAPMVSKRYKNQRTSK 469


>gi|315499118|ref|YP_004087922.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417130|gb|ADU13771.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 605

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 152/581 (26%), Positives = 244/581 (41%), Gaps = 62/581 (10%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     +   L + GY   T +Q   +   L + D+L  AQTG+GKT AF L +
Sbjct: 1   MTTFKDLGLSASLLSTLEKEGYHTPTPIQAQAIPILLNKHDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L+     +P  +   L ++PTRELA Q+    +      G+ +A   GGV    + 
Sbjct: 61  LHHILSNRIIPAP-RSCRVLVLSPTRELATQIADSFKAYSKGLGLQIATIFGGVKYGPQY 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  I+V TPGRL DHI  K +++  ++ +VLDEAD+MLD+GF   I  +    P 
Sbjct: 120 KALQGGIDILVATPGRLIDHIEQKTIDLKAVEHLVLDEADQMLDMGFIKPIRQVASRLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA     +  +V I  E      +  + + +    +   +  +
Sbjct: 180 QRQNLFFSATMPKEIAGLANELLTNPKKVEITPEATTAERVTQQVIFIEQQRKRALLSEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    ++F  T+    R    L     +  A+ G+ +Q +R  ALQ  + GR R  
Sbjct: 240 YADEKLARTLIFTRTKRGADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFKAGRVRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  VI+ EL    E  +HR GRT RAG++G S+ ++  + ++  + 
Sbjct: 300 VATDIAARGIDVDNVTHVINYELPFVAEAYVHRIGRTARAGKEGHSITLVADDERKLLKD 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +  +  PS +  R +D    L D   L S Q ++ K  D ++ K       A
Sbjct: 360 IER-----ITRQRIPSWD--RRKDQALKLLDEAILASGQTEKPKTPDRVVEK------TA 406

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             L                  V  R R R +    +  G   DN +G   F    G K  
Sbjct: 407 RHL------------DPDAERVHKRSRNRPNRDERRGNGRDGDNSRGERTF----GKKDA 450

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA--DGVDLLRRTVKLDKGIQL--- 533
              R                             E     +  D +       K  +    
Sbjct: 451 FGNRAERQA----------------------RFERPERTERYDPMASDRAPTKASREFPA 488

Query: 534 -KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +   G+KP F G +  G K +  +    + FK+   A   
Sbjct: 489 AERAFGDKPRFDGPR--GEKPRFDKPKGERPFKKRDDARGE 527


>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
 gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
          Length = 526

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 230/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIDTNR------NVVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   E    +       ++    DE    +    K D  K+AA 
Sbjct: 355 EKLTKKRMKGLKPATAD---EAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  GG  
Sbjct: 412 FTPEELALYILNLTVKDPDTLPKVEIAREKPLPFKPSGGGF 452


>gi|89099486|ref|ZP_01172362.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89085872|gb|EAR64997.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 479

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 140/452 (30%), Positives = 224/452 (49%), Gaps = 12/452 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L   +    D          
Sbjct: 1   MGFEEATPIQAETIPLSLANKDLIGQAQTGTGKTAAFGVPLIDKIDTSKDVI------QG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QV  EL  +       V    GG  ++R+ R L+   HI+VGTPGR+ D
Sbjct: 55  IIIAPTRELAIQVSEELYKIGYGKRARVLSIYGGQDINRQIRALKKPPHIIVGTPGRVLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI+ K L + ++   +LDEADEML++GF +DIE IL S P +R+ L+FSAT+   I  +A
Sbjct: 115 HIKRKTLRLDNVHTAILDEADEMLNMGFIEDIESILASVPVERQTLLFSATMPAPIQRMA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + + +D   + + ++      I+   V V    + + +  +L     + AI+F  T+  V
Sbjct: 175 ERFMRDPQIIRVKAKEMTVPLIEQFYVEVQERTKFDVLTRLLNIQSPELAIIFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               + L    F    + G+LSQ +R + L+  ++G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELAEALNLRGFLAEGIHGDLSQAKRMSVLRKFKEGSIDVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG++GM++  I    +     + R     +     P++  
Sbjct: 295 NFDIPQDPESYVHRIGRTGRAGKEGMAMTFITPREKSYLAVVERTTKSKMGKMVPPTLAE 354

Query: 378 IRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT 435
             E   +  +         +   + K+  D LL +HD   + A  L++    L    + T
Sbjct: 355 ALEGQQKAAVDKISQAISANNLENYKEAADELLEQHDASDVVAAVLKL----LTKEPDDT 410

Query: 436 PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           PV L   +       R       S DN +GS 
Sbjct: 411 PVKLTEEKPLPSKRDRKPYDRRRSNDNRRGSD 442


>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
 gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
           F0415]
          Length = 521

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 141/452 (31%), Positives = 237/452 (52%), Gaps = 18/452 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I +A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILQAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  +N+         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIAIDNNVI------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P +
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISHVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++     +++   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTSDNVEQFYIRVKEREKFDTMTRLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   ++  ++    + +
Sbjct: 235 DIEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQNKRLRVIRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA--- 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G SV  +  N        
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGKSVTFVSPNEMGYLSII 354

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               ++  +    +   E   + +A+  +  +R   D     +     K     L  +  
Sbjct: 355 ENLTKKRMKGLKPATAQEAFQAKKAVALKKIERDFADETIRSNFDK-FKGDAIKLAGEFS 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           PE++A   L +    +  PE +  V +   R 
Sbjct: 414 PEELALYILSLT---VQDPETMPEVEISRERP 442


>gi|150390712|ref|YP_001320761.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950574|gb|ABR49102.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 433

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 136/418 (32%), Positives = 210/418 (50%), Gaps = 6/418 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I  AL+  GY   T +QE  +   L+  D+L  AQTG+GKT AF + +  
Sbjct: 2   LFENLNIIKPIQRALTTEGYTEATPIQEKAIPSLLKGMDLLGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +E      +    AL +APTRELA+Q+    E      G+   V  GGVS H + + 
Sbjct: 62  GLSSEQRNLKGSRQIQALILAPTRELAIQIADSFETYGKHLGLRTLVIYGGVSQHPQTKS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL D I  K + ++ +K  VLDEAD MLD+G   D+  I+   P  R
Sbjct: 122 LNRGIDILVATPGRLLDLINQKFVRLNSIKYFVLDEADMMLDMGMIHDVRRIIKYIPAVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSAT+   I  LA    K+ V+V I   +     I+     V  S++   ++++L+
Sbjct: 182 QTMFFSATMPAEIAKLADQILKEPVKVEITPVSSTVDIIEQAVYYVNKSNKVQLLIHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VF  T+    +  K L +   Q  A+ G  SQ  R  AL   ++ + R+ +A
Sbjct: 242 SKAIVSALVFSRTKHGADKIVKSLEKAGLQAQAIHGNKSQNARQLALNNFKERKTRILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+ +L   PE  +HR GRTGRAG  G+++    Q  +   + + 
Sbjct: 302 TDIAARGIDVEELSHVINFDLPEVPETYVHRIGRTGRAGLGGIAISFCAQEEKNLLKEIQ 361

Query: 361 REANVS---VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +  + S   V   P P VE + E   +   +      +   + ++  +   AK    K
Sbjct: 362 KLISKSVPVVEDHPFPLVETLNESK-EVFTRKSSAPKTTPANNRRNKEASFAKKSAAK 418


>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
 gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
           23970]
          Length = 462

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 3/377 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDADI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366

Query: 365 VSVVWEPAPSVEAIRER 381
             +       +E  R+R
Sbjct: 367 RKLPELTIEGMEPTRKR 383


>gi|62179387|ref|YP_215804.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127020|gb|AAX64723.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713858|gb|EFZ05429.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 453

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +     R  E+L ++ 
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 364 NVSVV---WEPAPSVEA 377
           +  +    +EP PS++A
Sbjct: 368 SPRITTPGYEPDPSIKA 384


>gi|204929853|ref|ZP_03220874.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320847|gb|EDZ06048.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 453

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  LHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRITTPGYEPDPSIKA 384


>gi|313201469|ref|YP_004040127.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440785|gb|ADQ84891.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 468

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 139/470 (29%), Positives = 211/470 (44%), Gaps = 19/470 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I  AL E GY   T +Q   +   L   D++ SAQTG+GKT AF L   +
Sbjct: 4   TFETLNLHPSILRALEEAGYSTPTPIQAQAIPEVLAGHDLMASAQTGTGKTAAFTLPALN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +   S +  P  L + PTRELA QV                  +GG+    + + 
Sbjct: 64  LLADIHP--SKSRGPRILVLTPTRELAAQVNDAARKYGKFMRARTVSIVGGMPYPLQNKL 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I ++ P++R
Sbjct: 122 LSQPLDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERINEALPRER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + LMFSAT    I  +AK   KD   + IA++  +H++I+ R      ++ ++  + ++L
Sbjct: 182 QTLMFSATFEGPIANIAKTLLKDPKVIQIAAQKEKHANIEQRLHFVDDMNHKNKLLEHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF ST+       + L     +  AL G+++Q  R+  L  +R G  RV +
Sbjct: 242 IAPDVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V       + +  ++
Sbjct: 302 ATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVAVSFASHADRHQLRKI 361

Query: 360 FREANVSVV---------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +     +            PAP  +        R           +   K       A 
Sbjct: 362 EQYTGQRIEITVIEGFEPKRPAPRTDDRGSNGRPRSGNP-----GSKSGFKPRGQGGYAG 416

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           ++P   +         G     E        G D+F    RA        
Sbjct: 417 NNPRSASGAGNSEGNRGFGGRSEGNRSEGNRGNDKFGGQKRADAPRRPRN 466


>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 539

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 146/489 (29%), Positives = 246/489 (50%), Gaps = 20/489 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  E
Sbjct: 28  HLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTE 87

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 88  NP------VVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGA 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 142 HIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++     +
Sbjct: 202 SATMPDAIKRIGVKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   + +ATDVAA
Sbjct: 262 LSIVFGRTKRRVDELTRGLKIRGFRTEGIHGDLDQGKRLRVLRDFKNGNLDILVATDVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +      
Sbjct: 322 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQVIESLTKK 381

Query: 366 SVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDPEKIAAG 419
            +      + E     +++ A + ++     +SI+   +K       L A+  PE++A  
Sbjct: 382 RMKGMKPATAEEAFQAKKKVALKKIERDFADESIRNQFEKFGKDARKLAAEFTPEELALY 441

Query: 420 FLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            L +             A E+  P   VSG ++   +S+  +     RD   G   +   
Sbjct: 442 ILTLTVQDPDTLPEVEIAREKPLPFKYVSGANKGNRNSKNGRRSNDRRDRTNGRDNYK-K 500

Query: 473 VGSKQKAEA 481
            G   + + 
Sbjct: 501 GGRHDRFDK 509


>gi|308172326|ref|YP_003919031.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605190|emb|CBI41561.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens DSM 7]
          Length = 511

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 223/459 (48%), Gaps = 14/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L  
Sbjct: 21  TFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 81  KMNPESPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + 
Sbjct: 135 LKKNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L 
Sbjct: 195 QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLD 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +A
Sbjct: 255 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + 
Sbjct: 315 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIE 374

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +        ++           LL  HD   + A
Sbjct: 375 QTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDHDAVTVVA 434

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +++         + TPV L           +  +   
Sbjct: 435 AAIKMA----TKEPDSTPVRLTDEAPMVSKRYKNQRTSK 469


>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 423

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 186/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  AL+E GY   T +Q   +   L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTTFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  + R +P  A   L +APTRELA Q+    +       +   V  GGV   R+ 
Sbjct: 61  LQRLLTHHRRANPKGA-RVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V  PGRL D +    +++S L+ +VLDEAD MLD+GF  DI  I+   P+
Sbjct: 120 EAMRRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPR 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+  +I  LA    +D   V +   +     I    + V   ++  A+  +
Sbjct: 180 DRQTLLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTDNKRAALQLL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + A+VF   +   ++    L +H     A+ G  SQ  R  A+   R G  +V 
Sbjct: 240 VDSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+  V + +L + PE+ +HR GRT RAGR G +V +     +     
Sbjct: 300 VATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRD 359

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 360 IEKAIGKKIP 369


>gi|322804966|emb|CBZ02525.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum H04402 065]
          Length = 425

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 210/402 (52%), Gaps = 8/402 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +        +  AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPRSIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +     ++ +  P VE       + I +D +  ++ + +  K
Sbjct: 362 K-----LIHKEIPVVED-HPYKIRHINEDEVKKENTKNNYNK 397


>gi|328552138|gb|AEB22630.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens TA208]
          Length = 494

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 223/459 (48%), Gaps = 14/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L  
Sbjct: 4   TFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E+          A+ IAPTRELA+QV  EL  +       V    GG  + R+ R 
Sbjct: 64  KMNPESPNI------QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + 
Sbjct: 118 LKKNPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEH 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  +A+ +  +   V + ++    S+I    + V    + + +  +L 
Sbjct: 178 QTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLD 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF  T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +A
Sbjct: 238 IQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + 
Sbjct: 298 TDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIE 357

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +     +     P+++   E   Q  +        ++           LL  HD   + A
Sbjct: 358 QTTKRKMDRMKEPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDHDAVTVVA 417

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +++         + TPV L           +  +   
Sbjct: 418 AAIKMA----TKEPDSTPVRLTDEAPMVSKRYKNQRTSK 452


>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
 gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
           19718]
          Length = 498

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 208/373 (55%), Gaps = 2/373 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   I  A+++ GYVN T +Q  ++   L  KDV+ SAQTG+GKT  F L L   L    
Sbjct: 12  LSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQTGTGKTAGFTLPLLYRLQAYA 71

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL +APTRELA+Q+   +        +  AV  GG+++  +   LQ G
Sbjct: 72  NTSVSPARHPVRALIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D +  K +N S  + +VLDEAD MLD+GF  DI+ ++     +R+ LM
Sbjct: 132 VEILVATPGRLLDLVEQKAVNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLM 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA +  K  VR+  A +N  +  I +    V    +   +++++R    
Sbjct: 192 FSATFSGEIRKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHLIRQQNL 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A++F  T+   S   ++L+ H    VA+ G+ +QQ+R+ AL   + G  ++ +ATDVA
Sbjct: 252 KQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHGDVQILVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  VI+ EL  NPE+ +HR GRTGRAG KG ++ ++ ++ +     + +  N
Sbjct: 312 ARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHEKELLANIEKLLN 371

Query: 365 VSVVWEPAPSVEA 377
             +  E     +A
Sbjct: 372 AKLETEQIAGFDA 384


>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
 gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
          Length = 464

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 212/370 (57%), Gaps = 2/370 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AEND 67
           + +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  EN 
Sbjct: 3   EPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENA 62

Query: 68  RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ G  
Sbjct: 63  SASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVE 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+FS
Sbjct: 123 VLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L+    + 
Sbjct: 183 ATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQ 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A +F +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVAAR
Sbjct: 243 AFIFSNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + +     
Sbjct: 303 GLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKK 362

Query: 367 VVWEPAPSVE 376
           +  EPAP ++
Sbjct: 363 IEVEPAPMLD 372


>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 374

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 200/368 (54%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +  
Sbjct: 61  QHLQLDKE-AARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 LLRKGIDILVATPGRLLDLMTQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL
Sbjct: 180 KQTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 476

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 130/428 (30%), Positives = 210/428 (49%), Gaps = 16/428 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +QE  + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---------LS 229
            R+ L FSAT++P I  +   +     R+ +A +      I+   V++            
Sbjct: 178 TRQTLFFSATMAPEIERITDTFLSAPARIEVARQATASETIEQGVVMIKGGRRDREGSTK 237

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +    +         NAI+FC+ +  V    K L ++ +   A+ G+L Q  R+  L+ 
Sbjct: 238 RKVLRALIDAEGDKCTNAIIFCNRKTDVDITAKSLKKYGYDAAAIHGDLDQSVRTRTLEG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  +A+DVAARG+D+P +  V + ++ S+PE+ +HR GRTGRAGR+G ++ +  
Sbjct: 298 FREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHPEDYVHRIGRTGRAGREGKAITLCT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++  E + +     +     P      E + ++  +      S + DE++       
Sbjct: 358 ARDEKALEAIEKLIQKEIPRLDNPVEAEPAEAEDKKPEKKS--RASTRKDERESEAKDTR 415

Query: 410 KHDPEKIA 417
           K  P K A
Sbjct: 416 KDQPIKDA 423


>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 137/386 (35%), Positives = 220/386 (56%), Gaps = 6/386 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE+  +   I +AL + GYV+ T +Q   +   L  KDV+ +AQTG+GKT  + L + 
Sbjct: 15  KKFEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPML 74

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            +LL   N   SPA  P+ AL + PTRELA QV  +++     T V  AV  GGV +  +
Sbjct: 75  QSLLFSANTSMSPARHPVRALILVPTRELADQVFEDVKRYAKYTPVKSAVVFGGVDISSQ 134

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH++ K +N+SH + +VLDEAD MLD+GF  D++ I++  P
Sbjct: 135 TSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRMLDMGFLPDLQRIVNLLP 194

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT S  I  LA+++ KD V V +A +N    ++      +  S+++ A+ +
Sbjct: 195 KQRQNLLFSATFSNDIKKLARSFMKDPVTVEVARQNATAENVKQTVYRIEESEKNAAVEH 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    +  ++F +T+A  SR  + L     +  A+ G+ +Q ER   L+  + G   +
Sbjct: 255 LLKDRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQAERMATLEAFKSGSIDI 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + +L  VI+ +L    E+ +HR GRTGRAG KG ++ +  +  +R  +
Sbjct: 315 LVATDVAARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLLK 374

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA 383
            + +     +  E     E  RE+  
Sbjct: 375 EIEKLTKRQLPLEKLTDFE--REKHV 398


>gi|332667550|ref|YP_004450338.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336364|gb|AEE53465.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 516

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 239/461 (51%), Gaps = 15/461 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ G+   T +Q   +   L  KD++  AQTG+GKT AFG+ L  ++    
Sbjct: 11  LSQEVQSAINDMGFAEATPIQSEAIPHLLNGKDLIGQAQTGTGKTAAFGIPLLESIDCST 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELAVQV  EL  L     G+ ++   GG S+ R+ ++L+ G 
Sbjct: 71  REVA------AIVLCPTRELAVQVAEELRKLAKYKKGLFISTIYGGDSIQRQLKELKAGP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DH++ K L + H++  VLDEADEML++GFR+DIE +L+  P+ R+ ++F
Sbjct: 125 QVVVGTPGRVMDHLQRKTLRLDHIQMAVLDEADEMLNMGFREDIENVLNQMPETRQTVLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +AK +QK  + V +  E   ++ ID     + +  ++  I  ++ Y+  +
Sbjct: 185 SATMPRPILEIAKRFQKSPIHVKVVKEELTNASIDQIYYDIPVQAKEAVIARLIEYYDLQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF + + +V   T+ L        A+ G+L+Q +R+  L   R G   V +ATDVAA
Sbjct: 245 RVIVFANMKKTVDDLTEGLNLLGISAKAIHGDLNQNQRNAVLTAFRGGAVNVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERLFREAN 364
           RGID+  ++ V + +L  + E  +HR GRTGRAG+ G S   +  +N + R   +   + 
Sbjct: 305 RGIDVSSVDGVFNYDLPYDAEYYVHRIGRTGRAGKLGKSFSFVTGRNDRYRLRDIEDFSK 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DPEKIAA 418
           V +     P+V+ + +R   ++ +      + +G + +  ++L          D  ++A 
Sbjct: 365 VRIDRHNVPTVQDLAKRQQAKLWEKVTETLA-EGGDLEPYEILARDFCKNNGLDSRQLAV 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
             +++    + A E     +    R     +    +    S
Sbjct: 424 ALVKMAMPDVNAVEIPNLNAERERRPASVREGGEREFSRNS 464


>gi|56965701|ref|YP_177435.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56911947|dbj|BAD66474.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 493

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 142/491 (28%), Positives = 238/491 (48%), Gaps = 18/491 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +   + +A++  G+   T +Q+  +   L  KDV+  AQTG+GKT AFG+ L
Sbjct: 1   MANFEQFGLDASVVQAVTNIGFTEATPIQQETIELVLAGKDVIGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + + + N           L +APTRELA QV + L       GV   V  GG    ++ 
Sbjct: 61  VNRIDSSNPLV------QGLVLAPTRELANQVEQALRQFGRVKGVRTTVVYGGEDFGKQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+   HI+V TPGRL DH+R K + +  ++ VVLDEADEML++GF +DIE IL  +P+
Sbjct: 115 RSLKQRPHIIVATPGRLLDHMRRKTIRLESIETVVLDEADEMLNMGFIEDIETILAETPQ 174

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  + FSAT+   + +LA  + K+  R+ + ++     +I  + + V   ++ + +  
Sbjct: 175 ETRQTLLFSATMPKRMESLASKFMKNPTRIAVKAKEVTMENIAQQFIEVHEREKFDVLCR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       +IVF  T+  V    + L +  ++   L G+L+Q +R++ L+  ++G   V
Sbjct: 235 LIDLETPDLSIVFGRTKRRVDELAEALIKRGYRAEGLHGDLNQAKRNSVLRKFKEGLIDV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + +L  +PE+ +HR GRTGRAGR G+++ +  +  +   +
Sbjct: 295 LVATDVAARGLDISGVTHVFNFDLPQDPESYVHRIGRTGRAGRSGIAITLATKPEREHVK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +   +   +   P P+ E   E   Q  L +    +     E+    V   +   E  A
Sbjct: 355 LIESVSKRRMTQRPKPTYEEALEGQKQSTLNE--LRELAAKGEQDSYRVAAKELLQETDA 412

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG-----RDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
              L      L    + TPV L S      + R  +  R  +          G       
Sbjct: 413 VTALAAALKLLTKEPDQTPVKLTSEAPLRTKKRHGNGGRDGRRHNDRDRRPWGQKRGR-- 470

Query: 473 VGSKQKAEARW 483
            G +   + +W
Sbjct: 471 DGRRSGHQRKW 481


>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
 gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
           1_2_62CV]
          Length = 565

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 146/489 (29%), Positives = 246/489 (50%), Gaps = 20/489 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG      +  E
Sbjct: 54  HLSAELLAEIDKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTLEKINTE 113

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 114 NPIV------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALRSGA 167

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++R+ L+F
Sbjct: 168 HIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF 227

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++     +
Sbjct: 228 SATMPDAIKRIGMKFMKEPTHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLMDVEQPE 287

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +ATDVAA
Sbjct: 288 LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLVATDVAA 347

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +      
Sbjct: 348 RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK 407

Query: 366 SVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDPEKIAAG 419
            +      + E     +++ A + ++     ++I+   +K       L  +  PE++A  
Sbjct: 408 RMKGMKPATAEEAFQAKKKVALKKIERDFADENIRNQFEKFGKDARKLATEFTPEELALY 467

Query: 420 FLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            L +             A E+  P   VSG ++   +S+  +     RD   G   +  S
Sbjct: 468 ILTLTVQDPDTLPEVEIAREKPLPFKYVSGANKGNRNSKNGRRSNDRRDRTNGRDNYKKS 527

Query: 473 VGSKQKAEA 481
            G   + + 
Sbjct: 528 -GRHDRFDK 535


>gi|293376735|ref|ZP_06622957.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325845681|ref|ZP_08168964.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
 gi|292644601|gb|EFF62689.1| ATP-dependent RNA helicase DbpA [Turicibacter sanguinis PC909]
 gi|325488282|gb|EGC90708.1| ATP-dependent RNA helicase DbpA [Turicibacter sp. HGF1]
          Length = 479

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 139/542 (25%), Positives = 246/542 (45%), Gaps = 68/542 (12%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I ++L+  GY + T VQ +++   L ++D++V ++TGSGKT AFG+ +
Sbjct: 1   MTAFNELQLSESILKSLTGLGYEHATEVQASVIPTVLNKQDLIVQSKTGSGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  + ++      P AL + PTRELA+Q+  E+  +     + V    G      + 
Sbjct: 61  CEMLDWDENK------PQALILTPTRELALQIKEEISNIGRFKRIKVTAVYGKSPFKEQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L+   HIVVGTPGR+ DH+    L++  L   VLDEADEML +GF + +E I++ +P+
Sbjct: 115 RELKQKTHIVVGTPGRVQDHLERGTLSLDKLSLFVLDEADEMLKMGFIEVVENIMNEAPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+   I  L+++Y      + I S       +++    V   ++   + ++
Sbjct: 175 KRQTMLFSATMPDRIKKLSQHYLTHPQEIKIESPTLTTDLVEHALYEVREQEKVKLLQDL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  ++FCST+ +V    + L++  + +  L G L Q+ER   ++  + GR    
Sbjct: 235 LMVENPERCMIFCSTKEAVDALYRNLSQKGYPIERLHGGLDQKERFETMKNFKIGRFAYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           ++TDVAARGID+  +  VI+ +L    ++ +HR GR GRAG+KG ++    +  QR  E 
Sbjct: 295 VSTDVAARGIDVSGVSHVINYDLPPEKDSFVHRIGRAGRAGQKGKAITFATRFDQRWLEE 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +     PS E + ++                                     
Sbjct: 355 IQAYIGFELPICERPS-EDVTQQ------------------------------------- 376

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                 + G        P            +     + GG +                  
Sbjct: 377 -----AKDGFMKKLNSRPTLRHEKTADVNREIMKLYINGGKKKK---------------- 415

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
             A   +  +    G++ + IG I +Q ++T+V++       + R +K DK I+ K L  
Sbjct: 416 LRAIDFVGAITSVDGVSGEDIGIIDIQDNVTYVDILNGKGWTVIRGLK-DKTIKGKKLRV 474

Query: 539 EK 540
           +K
Sbjct: 475 QK 476


>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 443

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  +
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYID 366

Query: 365 VSVVWEPAPSVEAIRER 381
             +       +E  R+R
Sbjct: 367 RKLTELTVEGMEPTRKR 383


>gi|298207628|ref|YP_003715807.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
 gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
           HTCC2559]
          Length = 424

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 129/400 (32%), Positives = 206/400 (51%), Gaps = 13/400 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I ++L E+GY   TS+Q   +   L+ +DVL SAQTG+GKT AF + +  
Sbjct: 2   TFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  + +        L+L + PTRELA+Q+G         T +   V  GGV    +   
Sbjct: 62  HLANDLENAKGKRKILSLIVTPTRELAIQIGENFSAYGKYTSLKSTVIFGGVPQRAQTNK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +++ TPGRL D +    +++  +K  VLDEAD MLD+GF  DI+ +L   PK R
Sbjct: 122 LKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRMLDMGFIHDIKKLLTKLPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I TL+    K+  +V +   +     I         +++ + +++IL 
Sbjct: 182 QSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLYTTNKTNKGDLLLHILE 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+    R  + L +   +  A+ G  SQ +R  AL+  +DG  RV +A
Sbjct: 242 DPKIDQVLVFSKTKHGADRTVRKLLKKKIKSAAIHGNKSQNQRQKALKAFKDGNIRVMVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAE 357
           TD+AARGID+  LE VI+ ++ + PE  +HR GR GRAG  G+++ +         +  E
Sbjct: 302 TDIAARGIDIDKLEYVINYDIPNEPETYVHRIGRCGRAGEDGIAISIGEPEEIQFIKDIE 361

Query: 358 RLFREANVSVVWEPAP--------SVEAIRERDAQRILQD 389
           +L ++    +   P P        S +   E++ QRI Q+
Sbjct: 362 KLIKQKITVIKDNPFPQTDKPMTTSEKKAAEKEKQRIKQE 401


>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 469

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIG 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|240128393|ref|ZP_04741054.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686791|ref|ZP_06153653.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627075|gb|EEZ59475.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 462

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E+ R+R 
Sbjct: 367 RKLPELTIEGMESTRKRK 384


>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
 gi|187774670|gb|EDU38472.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 130/403 (32%), Positives = 210/403 (52%), Gaps = 8/403 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DESIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEEIKSLKAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           +     ++ +  P VE       + I +D +  ++ + +  K 
Sbjct: 362 K-----LIHKEIPVVED-HPYKIRHINEDEVKKENTKNNYNKR 398


>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 451

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   ++ +D++ SAQTG+GKT  F L L   L+ + 
Sbjct: 8   LNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|206579391|ref|YP_002239559.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|290510541|ref|ZP_06549911.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
 gi|206568449|gb|ACI10225.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
           342]
 gi|289777257|gb|EFD85255.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. 1_1_55]
          Length = 451

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   ++ +D++ SAQTG+GKT  F L L   L+ + 
Sbjct: 8   LNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQRLIDKE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQVGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVSLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|255101321|ref|ZP_05330298.1| ATP-dependent RNA helicase [Clostridium difficile QCD-63q42]
          Length = 497

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 127/533 (23%), Positives = 239/533 (44%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  + +         AL + PTRELA+QV  E+  +     V  +   G  S+  +
Sbjct: 61  LCENINVDYNNI------QALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +     ++  
Sbjct: 175 KEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ 
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  +
Sbjct: 295 KFNILVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       +          +++ +  RI    +  +       K V         
Sbjct: 355 KYIENIETYIGYKI--------NELKDIEKSRITHGKVLFEEYSKGILKKVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481


>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
 gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-2A]
          Length = 415

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 196/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     I +AL ++GY   T +QE  +   L+  D+L  AQTG+GKT AFG+ + +
Sbjct: 2   TFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPILN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL EN+         AL + PTRELA+Q+          T +   V  GGV   ++   
Sbjct: 62  HLLKENNSGQGKRKIKALVVTPTRELAIQIAENFTDYSQFTHLRNTVIFGGVKQSKQVAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  I+V TPGRL D +    +    LK VVLDEAD+MLD+GF  D++ I+   P  R
Sbjct: 122 LQQGVDILVATPGRLLDLMNQGYITFRDLKYVVLDEADQMLDMGFIHDVKKIIAKLPPNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  L++    D  RV I  E      +      V+ +++ N ++++L 
Sbjct: 182 QSLFFSATMPKTIVELSQKMLGDFERVTIKPEQATAEKVKQGVYFVSKNNKPNLLIHLLD 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+   ++  K L +   +  A+ G  SQ +R  AL   +DG  +V IA
Sbjct: 242 QRPQDSVLVFSRTKHGANKIVKTLDKAKIKSAAIHGNKSQAQRQKALGEFKDGSLKVLIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ DL LVI+ +L +  E  +HR GRTGRA   G+++     + +   + + 
Sbjct: 302 TDIAARGIDVDDLALVINYDLPNVSETYVHRIGRTGRASASGIALSFCMGDERPYLKDIE 361

Query: 361 REANVSVVWE-PAPSVE 376
           +     V      P +E
Sbjct: 362 KLIKQQVPRMGEHPYME 378


>gi|331268829|ref|YP_004395321.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
 gi|329125379|gb|AEB75324.1| ATP-dependent RNA helicase DeaD [Clostridium botulinum BKT015925]
          Length = 476

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 133/420 (31%), Positives = 217/420 (51%), Gaps = 11/420 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   I + +   GY + T VQE ++   L++KD++V +QTGSGKT +FG+ +  
Sbjct: 3   FKEF-NLSNEILKTIQMLGYKSPTEVQEKVIPIALKDKDIIVKSQTGSGKTASFGIPVCE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  EN +      P AL + PTRELAVQ+  ++  +     +      G   V  ++  
Sbjct: 62  KVKLENKK------PQALILTPTRELAVQIKEDISNIGRFKKIKCVAVYGKEPVSIQKNQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HIVVGTPGR  DHI    + +S ++ +++DEAD+ML++GF D +E ++ S PK R
Sbjct: 116 LKQRVHIVVGTPGRTFDHIEKGNMELSDVRYLIIDEADKMLNMGFIDQVEDVIKSLPKDR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT+   I  L   Y  D  ++ I  +N     I+     V    + + +  I+ 
Sbjct: 176 VTMLFSATLEERIEKLCVKYMNDPEKIEIDKKNVTTDIIEQEYYDVESDRKFSLLNKIIY 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+FC+T+A V      +    F   AL G + Q++R   +Q  + GR    +A
Sbjct: 236 TERPDSCIIFCNTKAEVGSIAVKMKNKGFDTKALHGGMEQKDRLEVIQEFKRGRFPFLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  VI+ E+ +  E+ +HR GRTGRAG KG S+  + +   R+ + + 
Sbjct: 296 TDVAARGIDIEEITHVINYEVPAEKESYVHRIGRTGRAGHKGKSITFVCEYEDRKFKSIE 355

Query: 361 REANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                SV  +  PS E + +       +R ++  L  D      KK+  + +     +KI
Sbjct: 356 EYIGYSVPKKEIPSEEEVNQGRELFREKRKVRPKLKKDKSHEINKKITKIHINAGKKKKI 415


>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 464

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPETIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIA 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|168178014|ref|ZP_02612678.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
 gi|182671239|gb|EDT83213.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum NCTC 2916]
          Length = 425

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 132/402 (32%), Positives = 209/402 (51%), Gaps = 8/402 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPKPIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    + + + ++LR
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRSLLKHLLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +  N  +     P VE       + I +D +  ++ + +  K
Sbjct: 362 KLINKEI-----PVVED-HPYKIRHINEDEVRKENTKNNSNK 397


>gi|29347295|ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 374

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  +   L +KD+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N      S   AL + PTRELA+Q+   +E     T +   V  GGV+   +  
Sbjct: 61  QHL-HLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    + + +++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I  L  +  K+ V++ +  ++     I      V   ++   +++IL
Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L LVI+ +L   PE  +HR GRTGRAG  GM++    Q  +++   +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|55821544|ref|YP_139986.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737529|gb|AAV61171.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 528

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIHTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +     P+ +     +++ A + ++     ++I  +  K  D  +    +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQSKKKVALKKIERDFADEAIHANFDKFKDDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPETMPEVEIAREKP 442


>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
 gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
          Length = 457

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 198/385 (51%), Gaps = 8/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I  A++E GY + T +Q+  +   L   D+L SAQTG+GKT  F L +
Sbjct: 8   LTSFSDLALNEEILRAINELGYDSPTPIQQQAIPAVLAGNDLLASAQTGTGKTAGFTLPI 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+      +      AL + PTRELA QV   ++       +   V  GGVS++ + 
Sbjct: 68  LQKLVDAPRSGNNRRPIRALILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQM 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  +++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  ++   PK
Sbjct: 128 MKLRSGVDVLIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLPK 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  LA     + V + +A  N     +     LV    +   +  +
Sbjct: 188 KRQNLLFSATFSDDIKQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKKRKAELLSFM 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV 
Sbjct: 248 IGRENWQQVLVFTRTKHGANRLAEHLNKDGIKSAAIHGNKSQGARTRALADFKSGDIRVL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +  + 
Sbjct: 308 VATDIAARGLDIEQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCIDEVKLLKD 367

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +    S+       +EP PS++A
Sbjct: 368 IEKLLKKSIPVMAIDGYEPDPSIKA 392


>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 453

 Score =  217 bits (551), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 195/380 (51%), Gaps = 5/380 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I +A++  GY   T +QE  +   L  KD++ SAQTG+GKT AF L    
Sbjct: 2   SFETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L            P  L + PTRELA QV   +        V     +GG+    + + 
Sbjct: 62  RL--STPSPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     ++V TPGRL DH+    +N+S L+ ++LDEAD MLD+GF DD++ I  ++P  R
Sbjct: 120 LSQPVDLIVATPGRLIDHLERGRINLSRLELLILDEADRMLDMGFSDDVDKIAAAAPANR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + L+F+AT+   +  LA+   KD VR+ IA +   H  I+ R  +V     ++  + +++
Sbjct: 180 QTLLFTATMDDVMAKLAQRLLKDPVRIEIAGQKTSHDQIEQRLHVVDNLQHKNRMLQHLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+       + L        AL G+++Q  R+  +  MR G+ R+ +
Sbjct: 240 ADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++  +  N     +R+
Sbjct: 300 ATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDINYLDRI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R    ++     P +E  R
Sbjct: 360 ERYTGQTLPLHVIPGLEPTR 379


>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 523

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 226/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      S E   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
 gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 191/377 (50%), Gaps = 8/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + + +S+ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 90  VKSFHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 149

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 150 IIHVNAQ-PFLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQV 208

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 209 RDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 268

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+    +  +V I S + + +  I     +V+ + + N +V 
Sbjct: 269 DRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVK 328

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +          ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 329 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 388

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A
Sbjct: 389 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGNARFA 448

Query: 357 ER---LFREANVSVVWE 370
           +    +  EA   V  E
Sbjct: 449 KELVTILEEAGQKVSPE 465


>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
 gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
           25996]
          Length = 457

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   V +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEVVEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  +
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYID 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLNEVTVEGMEPTRKRK 384


>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 453

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 5/380 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+   GY   T +Q   +   L  +D++ SAQTG+GKT +F L    
Sbjct: 2   SFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL           P  L + PTRELA+QV   +        V     +GG+    +   
Sbjct: 62  RLLT--PSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMML 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF +D++ I +++P +R
Sbjct: 120 LAQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + L+F+AT+  A+  LA+   KD VRV +      +  I+ R  +   +  ++  + +++
Sbjct: 180 QTLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNRLLQHLV 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    L        AL G++SQ  R+  + MMR G+ R+ +
Sbjct: 240 SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N     +R+
Sbjct: 300 ATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYLDRI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R     +        E  R
Sbjct: 360 ERFTGKKLPMHVVEGFEPTR 379


>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 431

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 187/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  AL+E GY   T +Q   +   L+ +D+L  AQTG+GKT AF L +
Sbjct: 1   MTTFADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL    R  P  A  AL +APTRELA Q+               AV  GGV   R+ 
Sbjct: 61  LNHLLTSKGRAHPKGA-RALVLAPTRELASQIADSFASYARHMKFTHAVVFGGVGQGRQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V  PGRL D +    ++++ L+ +VLDEAD MLD+GF  DI  I+ + P 
Sbjct: 120 EALRRGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRMLDMGFVRDIRKIVATLPT 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+  +I+ LA    +D   V +   +     I    + V   ++  A+  +
Sbjct: 180 DRQTLLFSATMPKSISELAHGLLRDPATVQVTPPSSTVDRIRQAVMYVDTGNKREALKLL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + A+VF   +   ++    L EH     A+ G  SQ  R  A+   R G  +V 
Sbjct: 240 VDSPKVERAVVFTLMKHEANKVAAFLNEHGITAEAIHGNKSQGARERAMSGFRSGAVKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+  V + +L + PE+ +HR GRT RAGR G +V +     +     
Sbjct: 300 VATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRD 359

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 360 IEKTIGKKIP 369


>gi|238893853|ref|YP_002918587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae NTUH-K2044]
 gi|238546169|dbj|BAH62520.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 451

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQRLIQNE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQVGENVCDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVSLDKVEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLHNPLEVEVARRNTASEQITQHVHFVDKNRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|170759986|ref|YP_001785987.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406975|gb|ACA55386.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 425

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 204/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKDPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEDHPYKIRHINEGEIKK 388


>gi|255093167|ref|ZP_05322645.1| ATP-dependent RNA helicase [Clostridium difficile CIP 107932]
 gi|255314909|ref|ZP_05356492.1| ATP-dependent RNA helicase [Clostridium difficile QCD-76w55]
 gi|255517583|ref|ZP_05385259.1| ATP-dependent RNA helicase [Clostridium difficile QCD-97b34]
 gi|260683781|ref|YP_003215066.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260209944|emb|CBA63924.1| ATP-dependent RNA helicase [Clostridium difficile CD196]
          Length = 497

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 128/533 (24%), Positives = 239/533 (44%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  + +         AL + PTRELA+QV  E+  +     V  +   G  S+  +
Sbjct: 61  LCENINVDCNNI------QALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +     ++  
Sbjct: 175 KEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ 
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  +
Sbjct: 295 KFNILVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       V          +++ +  RI    +  +       K V         
Sbjct: 355 KYIENIETYIGYKV--------NELKDIEKSRITHGKILFEEYSKGILKKVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481


>gi|288925923|ref|ZP_06419853.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
 gi|288337347|gb|EFC75703.1| ATP-dependent RNA helicase RhlE [Prevotella buccae D17]
          Length = 375

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 197/374 (52%), Gaps = 2/374 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +AL  + Y   T +Q+  +   L  +D+L  AQTG+GKT AF + + 
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L    D         AL + PTRELA+Q+    +     T +   V  GGVS + + +
Sbjct: 61  QQLAKSADDNRRRD-IKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I++ TPGRL D I    + + H+   VLDEAD MLD+GF  DI+ ++   PK+
Sbjct: 120 ELERGVDILIATPGRLLDLISQHIITLEHICHFVLDEADRMLDMGFIHDIKKLIPLLPKR 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  L+K+      RV +A  +     I+ R   V    + + +V++L
Sbjct: 180 RQTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G ++A+VF  T+    R  + L     +  A+ G  SQ  R  AL   + G+ RV +
Sbjct: 240 KNDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L++VI+ +L    E  +HR GRTGRAG  G+++    Q+ +     +
Sbjct: 300 ATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQDERPMVRDI 359

Query: 360 FREANVSVVWEPAP 373
            +     +    +P
Sbjct: 360 QKLTGKKLPIAQSP 373


>gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 564

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 199/376 (52%), Gaps = 8/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 137 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 196

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 197 LVHVSAQ-PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 255

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 256 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 315

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + TLA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 316 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 375

Query: 238 ILRY-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+        ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+ 
Sbjct: 376 LLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSP 435

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQ 353
           +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +     
Sbjct: 436 IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFA 495

Query: 354 RRAERLFREANVSVVW 369
           R   ++ +EA   V  
Sbjct: 496 RELVKILQEAGQVVPP 511


>gi|148378643|ref|YP_001253184.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           3502]
 gi|153933936|ref|YP_001383027.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|153937665|ref|YP_001386574.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
 gi|148288127|emb|CAL82195.1| putative ATP-dependent RNA helicase rhle [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929980|gb|ABS35480.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. ATCC
           19397]
 gi|152933579|gb|ABS39078.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum A str. Hall]
          Length = 425

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 204/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGRDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKVNKNPRTIRALVLAPTRELAIQIGESFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKAR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDIPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEDHPYKIRHINEGEIKK 388


>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP23-BS72]
          Length = 511

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 147/461 (31%), Positives = 226/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
 gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP19-BS75]
 gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1873-00]
 gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
 gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
 gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
          Length = 524

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 228/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + +++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|296103277|ref|YP_003613423.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057736|gb|ADF62474.1| putative ATP-dependent RNA helicase RhlE [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 450

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 190/380 (50%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + + +++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDNVEILVLDEADRMLDMGFIHDIRRVLAKLPPRRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     +      V    +   + +++     + 
Sbjct: 188 ATFSDDIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSHMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +     P  E      A+ I
Sbjct: 368 IPRIETPGYEVDPSIKAEPI 387


>gi|253698823|ref|YP_003020012.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251773673|gb|ACT16254.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 449

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 123/380 (32%), Positives = 192/380 (50%), Gaps = 5/380 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+   GY   T +Q   +   L  +D++ SAQTG+GKT +F L    
Sbjct: 2   SFETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL           P  L + PTRELA+QV   +        V     +GG+    +   
Sbjct: 62  RLLT--PSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMML 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF DD++ I D++P +R
Sbjct: 120 LAQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSDDVDRIADAAPAER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + L+F+AT+  A+  LA+   KD VRV +      +  I+ R  +   +  ++  + +++
Sbjct: 180 QTLLFTATMDDAMAKLAQRLLKDPVRVAVEGTEVANLQIEQRLHVTDDMRHKNRLLQHLV 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    L        AL G++SQ  R+  +  MR G+ R+ +
Sbjct: 240 SDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITNMRRGKVRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N     +R+
Sbjct: 300 ATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R     +        E  R
Sbjct: 360 ERFTGKKLPMHVVEGFEPTR 379


>gi|329956784|ref|ZP_08297353.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
 gi|328523823|gb|EGF50910.1| ATP-dependent RNA helicase RhlE [Bacteroides clarus YIT 12056]
          Length = 372

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 3/362 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY + T +Q   +   L  KD+L  AQTG+GKT AF + +   L A 
Sbjct: 7   NITEPILKAIEEKGYTSPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQAG 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R     +  AL + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 67  KERD---KSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +  ++  VLDEAD MLD+GF  DI+ +L   PK+++ L F
Sbjct: 124 DILVATPGRLLDLMNQGYIRLDSVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K  V++ I  ++     I+     V   ++   +++IL     +
Sbjct: 184 SATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTVYFVEKKEKSKLLISILHKAEGQ 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL++      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    + +    
Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSQEERKLVSDIQKLTGK 363

Query: 366 SV 367
            +
Sbjct: 364 KL 365


>gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41301]
          Length = 524

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 228/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + +++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQNIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
 gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
           29256]
          Length = 457

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++ + L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFIDDIETIVEATPTDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEIIEVERVDNQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADDLYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIA 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTVEGMEPTRKRK 384


>gi|16125088|ref|NP_419652.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221233815|ref|YP_002516251.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13422088|gb|AAK22820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220962987|gb|ACL94343.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 476

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 219/472 (46%), Gaps = 13/472 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + + +AL+E+GY   T +Q   +   L+ KD+L  AQTG+GKT AF L +
Sbjct: 1   MTQFSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L AE+ + +P      L ++PTRELA Q+    +      G+ V    GGV    + 
Sbjct: 61  LQRL-AEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  ++V TPGRL DH+  K   +S  +  VLDEAD+MLDLGF   I  I     K
Sbjct: 120 KALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+   I  LA     + V+V++A +      ID R + +    +   +  +
Sbjct: 180 NRQNLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF  T+    R  K L     +  ++ G+ +Q +R  AL   + G  R  
Sbjct: 240 FADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+  VI+ EL + PE  +HR GRT R G+ G+++     + +   + 
Sbjct: 300 VATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKD 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK--KMVDVLLAKHDPEKI 416
           + +    ++     PS +    R+ +++       D +   EK           + P ++
Sbjct: 360 IQKATRQTI-----PSFD---RRNDKQLAAAAAVADKLVPAEKYVDPRKADPRNNVPSEL 411

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                R    G     E    +   G  + +  ++  +  G  ++ F+G   
Sbjct: 412 RRKRNRNGGGGGGGRAEGAQKAQGRGPGQGKAGAKPGQKAGPGQNEFRGPKR 463


>gi|312892306|ref|ZP_07751801.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311295090|gb|EFQ72264.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 428

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 194/376 (51%), Gaps = 5/376 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+   + I +AL   GY N T +QE  +   L  KD+L  AQTG+GKT AF + +  
Sbjct: 2   SFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  +         L + PTRELA+Q+          TG+   V  GGVS H +   
Sbjct: 62  ILYQEKVQNRDHKGIKTLILTPTRELAIQIDESFAAYGKHTGLKHLVIFGGVSQHHQVEA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D ++ K +++  LK +VLDEAD MLD+GF +D++ I+   P KR
Sbjct: 122 LKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRMLDMGFVNDVKKIIAKIPVKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I TLA        +V +   +     I      V  +D+ + +++IL+
Sbjct: 182 QTLFFSATMPKEIQTLADTILNKPEKVEVTPVSSTADTIQQGIYFVDKNDKKSLLIHILK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF  T+    +  K L        A+ G  SQ  R  AL   ++   R+ +A
Sbjct: 242 DKKIETALVFTRTKHGADKVVKDLIRVGITAEAIHGNKSQNARQRALTNFKNRSTRILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAE 357
           TD+AARGID+ DL  VI+ EL + PE  +HR GRTGRAG  G+++     +         
Sbjct: 302 TDIAARGIDVDDLTHVINYELPNVPETYVHRIGRTGRAGASGIALSFCDADEGEFLYDIH 361

Query: 358 RLFREANVSVVWEPAP 373
           +L  +A   +  +P P
Sbjct: 362 KLITKAIPVIDDQPYP 377


>gi|254975780|ref|ZP_05272252.1| ATP-dependent RNA helicase [Clostridium difficile QCD-66c26]
 gi|255650694|ref|ZP_05397596.1| ATP-dependent RNA helicase [Clostridium difficile QCD-37x79]
 gi|260687441|ref|YP_003218575.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260213458|emb|CBE05139.1| ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 497

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 129/533 (24%), Positives = 240/533 (45%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKTV+F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTVSFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  + +         AL + PTRELA+QV  E+  +     V  +   G  S+  +
Sbjct: 61  LCENINVDCNNI------QALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRILDHINKGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +     ++  
Sbjct: 175 KEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ 
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  +
Sbjct: 295 KFNILVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       V          +++ +  RI    +  +       K V         
Sbjct: 355 KYIENIETYIGYKV--------NELKDIEKSRITHGKILFEEYSKGILKKVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481


>gi|42573778|ref|NP_974985.1| ethylene-responsive DEAD box RNA helicase, putative (RH30)
           [Arabidopsis thaliana]
 gi|108861888|sp|Q8W4R3|RH30_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 30
 gi|110741550|dbj|BAE98724.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010323|gb|AED97706.1| DEAD-box ATP-dependent RNA helicase 30 [Arabidopsis thaliana]
          Length = 591

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 199/376 (52%), Gaps = 8/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 224 LVHVSAQ-PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 282

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + TLA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 343 DRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 402

Query: 238 ILRY-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+        ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+ 
Sbjct: 403 LLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSP 462

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQ 353
           +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +     
Sbjct: 463 IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFA 522

Query: 354 RRAERLFREANVSVVW 369
           R   ++ +EA   V  
Sbjct: 523 RELVKILQEAGQVVPP 538


>gi|168183325|ref|ZP_02617989.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
 gi|182673470|gb|EDT85431.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Bf]
          Length = 425

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 203/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+    E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEDHPYKIRHINENEVKK 388


>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 526

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 229/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +          +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNR------NLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   E    +       ++    DE    +    K D  K+AA 
Sbjct: 355 EKLTKKRMKGLKPATAD---EAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  GG  
Sbjct: 412 FTPEELALYILSLTVKDPDTLPKVEIAREKPLPFKPSGGGF 452


>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
 gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
 gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
          Length = 524

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 227/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|116628255|ref|YP_820874.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101532|gb|ABJ66678.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 527

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P+K
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L     +   + G+L Q +R   ++  ++G+  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGSRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +    +P+ +     +++ A + ++     ++I+ +  K  D  +    +  P
Sbjct: 355 ENLTKKRMKGLKSPTAQEAFQSKKKVALKKIERDFADEAIRANFDKFKDDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPETMPEVEIAREKP 442


>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 520

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 225/461 (48%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++   +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFATMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      S E   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASTEEAFQAKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|197265494|ref|ZP_03165568.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197243749|gb|EDY26369.1| putative ATP-dependent RNA helicase RhlE [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 453

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP P ++A
Sbjct: 368 IPRITTPGYEPDPLIKA 384


>gi|58038681|ref|YP_190645.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001095|gb|AAW59989.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 431

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 196/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I +AL+E GY   T +Q   +   L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTSFAELKLAEPIQKALAEEGYTTPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +   N R +P     AL +APTRELA Q+G              AV  GGV   R+ 
Sbjct: 61  LNHI-FTNRRPAPPKGVRALVLAPTRELASQIGESFAAYARHMKFSYAVVFGGVGQGRQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G  ++V  PGRL D I  K +++S L+ +VLDEAD MLD+GF  DI+ I+   PK
Sbjct: 120 ETTRRGVDVLVAAPGRLLDLIGQKHIDLSTLEILVLDEADRMLDMGFVRDIQRIMALLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+ P+I+ LA +  K+   V +  E+     I+   + V    + +A + +
Sbjct: 180 QRQTLLFSATMPPSISDLAHSLLKNPATVQVTPESSTVDRINQAVMFVDSGSKKDAALML 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       A+VF   +   ++  + L ++  +  A+ G  SQ  R  A+   R G  +  
Sbjct: 240 LESPSVARAVVFTLMKHEANKVAEFLNKNGIRAEAIHGNKSQGARERAMAGFRSGAIKAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  V + +L + PE+ +HR GRT RAGR+G +V +     +   + 
Sbjct: 300 VATDIAARGIDVDEVSHVFNYDLPNVPESYVHRIGRTARAGREGCAVSLCDAEQRAWLKD 359

Query: 359 LFREANVSVV 368
           + ++    + 
Sbjct: 360 IEKKIGKPIP 369


>gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 524

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 228/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
 gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
           903]
          Length = 523

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 146/451 (32%), Positives = 235/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N      +   AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDVDN------TVIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEGEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKTGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                  +   +PA + EA + +    + +    ++    DEK   +      D  K+AA
Sbjct: 355 ENLTKKRMKGMKPATAAEAFQAKKQIALKK----IERDFEDEKIRTNFEKFGKDARKLAA 410

Query: 419 GF----LRIHRAGLCAPEEITPVSLVSGRDR 445
            F    L ++   L   +  +   +   R++
Sbjct: 411 EFTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|153939895|ref|YP_001390000.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|152935791|gb|ABS41289.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           Langeland]
 gi|295318086|gb|ADF98463.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum F str.
           230613]
          Length = 425

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 203/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQERSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+    E       +  AV  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSAVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEEHPYKIRHINEDEVKK 388


>gi|55823472|ref|YP_141913.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55739457|gb|AAV63098.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 528

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +     P+ +     +++ A + ++     ++I  +  K  D  +    +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQSKKKVALKKIERDFADEAIHANFDKFKDDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPETMPEVEIAREKP 442


>gi|240016422|ref|ZP_04722962.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
          Length = 462

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 511

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 229/471 (48%), Gaps = 9/471 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +   I  ALSE+GY + T +Q   +   L  KDV+ +AQTG+GKT  F L +
Sbjct: 29  VQTFDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 88

Query: 59  ASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LL   N   SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ 
Sbjct: 89  IQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNP 148

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  
Sbjct: 149 QTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 208

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT SP I  LA +Y K  V + +A  N  + ++      V    +  A+V
Sbjct: 209 PAQRQTLLFSATFSPEIKRLASSYLKQPVTIEVARSNSTNENVRQAVYQVEDGHKQAAVV 268

Query: 237 N----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +          ++  IVF +++   SR  + L        A+ G+ +Q ER   L   + 
Sbjct: 269 HLLKQRAEQSQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKS 328

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           G     +ATDVAARG+D+PD+  VI+ +L  + E+ +HR GRTGRAG  G ++ + +P N
Sbjct: 329 GTIDALVATDVAARGLDIPDMPCVINFDLPYSAEDYVHRIGRTGRAGASGDALSIYVPGN 388

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R    + +    S+        +   ER  Q   +     + ++       +    +H
Sbjct: 389 DERLLSDIEKLIKRSIPRGKLEGFDPTGERARQADSERRRERNDLRRARGADSEDRPRRH 448

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           D       F          P E +P S    +      +   +     +  
Sbjct: 449 DHGASRQAFRASDDPFFSRPYEPSPSSAAQAKAADEVAAALTRGRQAPKRP 499


>gi|126699799|ref|YP_001088696.1| ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251236|emb|CAJ69067.1| ATP-dependent RNA helicase [Clostridium difficile]
          Length = 497

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 127/533 (23%), Positives = 238/533 (44%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  + +         AL + PTRELA+QV  E+  +     V  +   G  S+  +
Sbjct: 61  LCENINVDYNNI------QALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +     ++  
Sbjct: 175 KEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ 
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  +
Sbjct: 295 KFNILVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       +          + + +  RI    +  +       K V         
Sbjct: 355 KYIENIETYIGYKI--------NELTDIEQSRITHGKVLFEEYSKGILKKVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481


>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
 gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 127/418 (30%), Positives = 203/418 (48%), Gaps = 9/418 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +     TGV  AV  GGV    +  
Sbjct: 61  QRLYQSDHK----KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  +V +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  K+L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +   + +      P  +VE ++ +  +   L++    +      K   D    K   
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRKKQA 414


>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 442

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 195/380 (51%), Gaps = 5/380 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + +A++  GY   T +Q   +   L  +D++ SAQTG+GKT +F L    
Sbjct: 2   SFESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      +    P  L + PTRELA QV   ++       V     +GG+    +   
Sbjct: 62  RLLV--PSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMML 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+  + +N S L+ +VLDEAD MLD+GF +D++ I  ++P +R
Sbjct: 120 LSQPVDIIVATPGRLIDHLDRRSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + L+F+AT+  A+  LA+   KD VRV +  +   +  I+ R  +   +  ++  + +++
Sbjct: 180 QTLLFTATMDDAMAKLAQRLLKDPVRVAVDGQQLTNLSIEQRLHVTDDMRHKNRLLQHLV 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+    +    L        AL G++SQ  R+  +  MR G+ R+ +
Sbjct: 240 ADASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N     +R+
Sbjct: 300 ATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYLDRI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R     +       +E  R
Sbjct: 360 ERLTGKPLPQHVIEGLEPSR 379


>gi|294012034|ref|YP_003545494.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292675364|dbj|BAI96882.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 461

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 224/474 (47%), Gaps = 28/474 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL+ + Y + T +Q   +   L+ KD+   AQTG+GKT AF L       A N
Sbjct: 8   LAEPILKALAAKKYASPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSLDH-FARN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P      L ++PTRELA Q+ +          + V V  GGV ++R+ R L  G  
Sbjct: 67  PKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRALGRGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I  +   I   +  VLDEAD+M+D+GF   ++ I    PK+R+ L FS
Sbjct: 127 IVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +  D V+V++A ++     +  +A  V   ++   +   +R      
Sbjct: 187 ATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIRSEDIDR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+    R  + L     Q VA+ G  SQ +R+ ALQ  R G  ++ +ATD+AAR
Sbjct: 247 ALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ EL + PE  +HR GRT RAG +G+++  +  + +   + + R   V 
Sbjct: 307 GIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERTTKVK 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +   P P                  F+++++   K        +  PE+      +  RA
Sbjct: 367 LDVVPLPEN----------------FVEAVRNLPKAAPQRKGREQTPEQ------KTRRA 404

Query: 427 -GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            G    ++       +     R D  A      +    +G S    +VG+ + A
Sbjct: 405 EGQRRYQDQQKQPRGNAERAHRPDGEAANPARKNFRRRRGGS----AVGAHKGA 454


>gi|240013980|ref|ZP_04720893.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121547|ref|ZP_04734509.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 462

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDIPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
 gi|212666908|gb|EEB27480.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
          Length = 434

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 203/415 (48%), Gaps = 9/415 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +     TGV  AV  GGV    +  
Sbjct: 61  QRLYQSDHK----KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  +V +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  K+L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAK 410
            +   + +      P  +VE ++ +  +   L++    +      K   D    K
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRK 411


>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
 gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
           [Streptococcus sp. C300]
          Length = 449

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 143/430 (33%), Positives = 225/430 (52%), Gaps = 13/430 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E   +   Q   + ++     +SI+G+ +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADESIRGNFEKFAKDARKLAAEFSP 414

Query: 414 EKIAAGFLRI 423
           E++A   L +
Sbjct: 415 EELAMYILSL 424


>gi|78224236|ref|YP_385983.1| DEAD/DEAH box helicase-like [Geobacter metallireducens GS-15]
 gi|78195491|gb|ABB33258.1| DEAD/DEAH box helicase-like protein [Geobacter metallireducens
           GS-15]
          Length = 452

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 188/372 (50%), Gaps = 3/372 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A++  GY + T +Q   +   L  +D+L +AQTG+GKT AF L     L   
Sbjct: 7   NLLPPILKAVAACGYTDPTPIQAQAIPRALEGRDLLATAQTGTGKTAAFVLPALQRLARP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P   P  L + PTRELA QV   +        +     +GG+    + R L    
Sbjct: 67  AQK--PGRGPRVLVLTPTRELAQQVTDAVRSYGKFLRIRSGAILGGMPYREQLRLLSAPV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +  + L++S L+ ++LDEAD MLD+GF DD++ +  +SP  R+ L+F
Sbjct: 125 DLIVATPGRLVDLLDRRSLDLSRLELLILDEADRMLDMGFSDDVDRVAAASPSDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           +AT+   +  LA     +  R+ +A     H  I+ R  +    S ++  + +++     
Sbjct: 185 TATMDATMARLAGRLLNEPERIEVAGTKTTHEHIEQRLHVADDLSHKNRLLQHLITDGDV 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+         L        AL G++ Q  R+  +  M+ GR R+ +ATDVA
Sbjct: 245 RKAIIFSATKRDAENMAIELRSQGHSAAALHGDMPQSARNRTIAAMKQGRIRLLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N      R+ R   
Sbjct: 305 ARGLDVSGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVSYLARIERYIG 364

Query: 365 VSVVWEPAPSVE 376
            ++     P +E
Sbjct: 365 QTLPEHQIPGLE 376


>gi|240115845|ref|ZP_04729907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|260440339|ref|ZP_05794155.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268601522|ref|ZP_06135689.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043632|ref|ZP_06569348.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585653|gb|EEZ50329.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012095|gb|EFE04084.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 462

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|240080542|ref|ZP_04725085.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240118143|ref|ZP_04732205.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240123692|ref|ZP_04736648.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268596673|ref|ZP_06130840.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268603859|ref|ZP_06138026.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682325|ref|ZP_06149187.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550461|gb|EEZ45480.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268587990|gb|EEZ52666.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622609|gb|EEZ55009.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 462

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPTRKRK 384


>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
 gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
          Length = 453

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L+ +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQILNENA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +E       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIGENVEQYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLNNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGSQNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCIDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRFAIEGYEPDPSIKA 384


>gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
          Length = 473

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 195/362 (53%), Gaps = 2/362 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+ + I  A++E+GYV  T +QE  + P L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MTFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+   R        AL + PTRELA+Q+          T +   V  GGV+   +  
Sbjct: 61  Q-LLSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G  ++V TPGRL D I    +++S ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 ALQRGVDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I TLA +   D V V +         I    +    +++ + ++++L
Sbjct: 180 RQTLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R     + +VF  T+    R  ++L +   +  A+ G+ SQ  R  A+   R GR RV I
Sbjct: 240 RERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L LVI+ +L    E  +HR GRTGRAG  G ++    ++ +   + +
Sbjct: 300 ATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDI 359

Query: 360 FR 361
            +
Sbjct: 360 QK 361


>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
 gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
          Length = 444

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 210/370 (56%), Gaps = 4/370 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N      IG+A+S   Y   T +QE  +   L  KDVL SAQTG+GKT AF L L +
Sbjct: 2   SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61

Query: 61  TLLAE-NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +  +   +     +P  L ++PTRELA Q+ +EL+         +   +GGVS   + +
Sbjct: 62  LVEKKPKHKHKRNISPDVLILSPTRELATQIEQELKRFSHFMDTNIVSVVGGVSYKLQNK 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++  + +V TPGRL D ++ + +N+ H+ A+V+DEAD MLD+GF  DI+ I +S+ + 
Sbjct: 122 LLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRMLDMGFIPDIKKIFESTSQD 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
           +++LMF+AT++  I  +A+ + KD  R+ +  EN+ + +I      +   + +   +V++
Sbjct: 182 QQVLMFTATLNKQIEKIAQQFLKDPQRIAVEQENKSNKNIQQIAYPVADYNQKKLVLVDV 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F +T+    R +  L     +   L G++SQ+ER+  +   ++   ++ 
Sbjct: 242 LNEADLNQAIIFTATKREADRLSDELYLMNHRSKTLHGDMSQRERTRTINRFKNNEIQIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRA RKG ++ ++    +   ++
Sbjct: 302 VATDVAARGIDVDDITHVINFDLPRQVEDYIHRIGRTGRAERKGKAISLVIDKEKFMLQK 361

Query: 359 LFREANVSVV 368
           + + AN+ + 
Sbjct: 362 IEKYANIKIE 371


>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 488

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 4/371 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +AL+E+GY   T +QE  +   L+ +D+L  AQTG+GKT +F L +
Sbjct: 49  MTKFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPI 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +N R +    P  L +APTREL  Q+    +          AV  GGV   R+ 
Sbjct: 109 LEHLI-KNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQV 167

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V  PGRL D +    +++S L+ +VLDEAD MLD+GF  DI  I+   P+
Sbjct: 168 EAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPE 227

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVN 237
           +R+ L+FSAT+  +I  LA +   D  RV +A  +     I    + V    D+ +A++N
Sbjct: 228 QRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLN 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A+VF   +   ++  + L ++     A+ G  SQ  R  A++  R G  +V
Sbjct: 288 MVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKV 347

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+  V + +L + PE+ +HR GRT RAGR G +V       +    
Sbjct: 348 LVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLR 407

Query: 358 RLFREANVSVV 368
            + R    +V 
Sbjct: 408 DIERTIGKTVP 418


>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 445

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 195/371 (52%), Gaps = 4/371 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +AL+E+GY   T +QE  +   L+ +D+L  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +N R +    P  L +APTREL  Q+    +          AV  GGV   R+ 
Sbjct: 61  LEHLI-KNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V  PGRL D +    +++S L+ +VLDEAD MLD+GF  DI  I+   P+
Sbjct: 120 EAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVN 237
           +R+ L+FSAT+  +I  LA +   D  RV +A  +     I    + V    D+ +A++N
Sbjct: 180 QRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLN 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A+VF   +   ++  + L ++     A+ G  SQ  R  A++  R G  +V
Sbjct: 240 MVESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+  V + +L + PE+ +HR GRT RAGR G +V       +    
Sbjct: 300 LVATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLR 359

Query: 358 RLFREANVSVV 368
            + R    +V 
Sbjct: 360 DIERTIGKTVP 370


>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
           mutans UA159]
          Length = 517

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 238/461 (51%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I  A+++ G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N      +   AL IAPTRELAVQ   EL     +  V V    GG S+ ++ +
Sbjct: 61  NKIDVTN------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTDLVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   +   +  L+    ++    DEK   +      D EK+AA 
Sbjct: 355 EKLTKKRMKGMKPATAQEAFQASKKVALKK---IERDFADEKIRSNFDKFTKDAEKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +    ++   +  R+    FK  G  +
Sbjct: 412 FSPEELAQYILTLTVQDPEMLPKVEIAREKPLPFKFAGKGK 452


>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
 gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
          Length = 524

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 226/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKQVALKK---IERDFADEAIRGNFEKFAKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FSPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|242310089|ref|ZP_04809244.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239523386|gb|EEQ63252.1| ATP-dependent RNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 504

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 132/482 (27%), Positives = 228/482 (47%), Gaps = 13/482 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + + E G+   + +Q+ ++   L   DV+  AQTG+GKT AF L L + L    
Sbjct: 19  FKKKVLDGIREVGFREPSPIQKEVIPIILDGLDVIAQAQTGTGKTAAFALPLVNGLKHNG 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL IAPTREL +Q+G E+  L     V      GG  + R+   L     
Sbjct: 79  -------SIEALVIAPTRELVMQIGDEIFKLGKYNKVRTVSLFGGQPIQRQVELLAKKPQ 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL DH+R   L     + VVLDE+DEMLD+GF DDIE I    P +R+ L+FS
Sbjct: 132 IVIATPGRLLDHLRNGRLKKFAPQIVVLDESDEMLDMGFLDDIEEIFSYLPSERQTLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+    +   V I   +  + DI  R  ++   +R++AIV ++       
Sbjct: 192 ATMPTPIKHLAQKILHNPKLVKITPSDTTNQDISQRYYIINEQEREDAIVRLIDSEMPTK 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F   +       + L +  ++  AL G++ Q+ER  +++  +D    + +ATD+AAR
Sbjct: 252 AIIFTRMKKEADLLCERLVDRGYKAGALHGDMEQRERQKSIKAFKDSSVNILVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   R+       
Sbjct: 312 GLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEFKELRRIKENTKAK 371

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--H 424
           +     P+++   ++    +L+  +  + I  +  ++ + + A  D  ++    L +   
Sbjct: 372 IELYEIPNLQDTLDKKDGNLLEKIVKYE-ITDEALRVYEQIRANIDITQLVCKLLSMVLQ 430

Query: 425 RAGLCAPEEI---TPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
              +  P +I           +    +D R  K           +S    S G +   ++
Sbjct: 431 DNKILGPNKIGLDKEDLYHFKKQLQENDKRRTKETKKMSSKTNNASPKKRSNGHRNNKDS 490

Query: 482 RW 483
           + 
Sbjct: 491 KN 492


>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
 gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 127/415 (30%), Positives = 203/415 (48%), Gaps = 9/415 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +     TGV  AV  GGV    +  
Sbjct: 61  QRLYQSDYK----KGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  +V +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  K+L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAK 410
            +   + +      P  +VE ++ +  +   L++    +      K   D    K
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKSNGDYWRRK 411


>gi|59801077|ref|YP_207789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194098823|ref|YP_002001886.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999112|ref|ZP_04719036.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240113089|ref|ZP_04727579.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240125882|ref|ZP_04738768.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493889|ref|ZP_05107060.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594948|ref|ZP_06129115.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599176|ref|ZP_06133343.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684482|ref|ZP_06151344.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398939|ref|ZP_06643104.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717972|gb|AAW89377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193934113|gb|ACF29937.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512929|gb|EEH62274.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548337|gb|EEZ43755.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583307|gb|EEZ47983.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624766|gb|EEZ57166.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610353|gb|EFF39463.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317164404|gb|ADV07945.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 462

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L   D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGCDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL +APTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLAPTRELAAQVEKNALAYAKNMRWFRTVSIVGGTSFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLTDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD+  + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDSEIIEVERVDGQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLTDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAITFAEVNEYVKVHKIEKYIN 366

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 367 RKLPELTIEGMEPARKRK 384


>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
 gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 192/383 (50%), Gaps = 8/383 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L +  
Sbjct: 2   SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +          AL + PTRELA Q+G  ++       +   V  GGVS++ +   
Sbjct: 62  LLSKHDHAVKGRRPVRALILTPTRELAAQIGENVQAYSKHLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLSKLPPKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +A  N     I+     V    +   +  ++ 
Sbjct: 182 QNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIEQSVHFVDKKRKRELLSQMIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +A
Sbjct: 242 EGDWRQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP P+++A
Sbjct: 362 RLLKREIPRIALPGYEPDPTIKA 384


>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
 gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
           biprosthecum C19]
          Length = 606

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 157/585 (26%), Positives = 238/585 (40%), Gaps = 38/585 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +   L   GY   T VQ   +   L+  D+L  AQTG+GKT AF L +
Sbjct: 1   MTKFSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL+     SP     AL ++PTRELA Q+    +      G+ +A   GGV    + 
Sbjct: 61  LQHLLSNRKMPSP-KMVRALILSPTRELASQIAESFKTYSKGMGLQIATIYGGVKYGPQY 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  ++V TPGRL DHI  K +++S ++  VLDEAD+MLDLGF   I  +    PK
Sbjct: 120 KALLGGLDVLVCTPGRLIDHIEQKTVDLSQVECFVLDEADQMLDLGFVKPIRQVASRLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA     D  RV I  E      +  + + +    +   +  +
Sbjct: 180 KRQNLFFSATMPKEIGVLASELLTDPKRVEITPEATTAERVSQQVLFIEAQRKRALLSEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  +VF  T+ S  R    L     +  A+ G+ +Q +R  ALQ  R G+ R  
Sbjct: 240 YADAVLERTLVFTRTKRSADRVAAYLQAGGVEAAAIHGDKNQSQRERALQAFRAGKVRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  VI+ EL +  E  +HR GRT RAG+ G+S+ +   + +R  + 
Sbjct: 300 VATDIAARGIDVDNVSHVINYELPNVAEAYVHRIGRTARAGKSGVSITLCADDERRLLKD 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD---VLLAKHDPEK 415
           + R     V  +  PS +  R +D    L D   L S Q ++    D       K DP+ 
Sbjct: 360 IER-----VTRQRIPSFD--RRKDQALKLLDEAILASGQTEKPSTPDRLPEHRKKGDPKP 412

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR-----DDSRAFKVGGGSRDNFKGSSWFS 470
                 +  R              V  R R R        R F            +  F 
Sbjct: 413 -----GQSSRRDDGPRHSDPDAEFVHKRSRNRTGSGARGGRPFADKKPFTPRDGDAKPFV 467

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            +     + +      M      I   S G  + +           G    ++    D  
Sbjct: 468 RAEPRADRYDP-----MATERGPIAATSNGPAKPEGKF-------LGKKPFKKDWSKDAP 515

Query: 531 IQLKYLGGEK---PDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              +     +   P     +    +   S+D A +   R      
Sbjct: 516 RGDRREHAPREHAPREHASREHASREHASRDHAPRTEGRTDDRRG 560


>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 489

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 202/386 (52%), Gaps = 11/386 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL++ GY N T +Q   +   L  +D+L +AQTG+GKT  F L +   LL   
Sbjct: 20  LADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQRLLDNP 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L + PTREL  QV   ++     T +   +  GGVS++ + + L+    
Sbjct: 80  MQTRKPGRPRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQALRQPVD 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH++   +++S ++  VLDEAD MLD+GF  DI  ++   P KR+ L+FS
Sbjct: 140 ILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLPAKRQNLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I +LA     +   V++A  N     +   A LV  + +   +  ++     K 
Sbjct: 200 ATFSPEIRSLAHGLLDNPAEVDVAPRNTASELVAQSAHLVPKTRKRALLSYLIGSRRWKQ 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +   + +A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 260 VLVFTKTKHGANRLAEQLGKDGIEAMAIHGNKSQGARTRALSRFKDGSLPVLVATDIAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           G+D+ +L  V++ EL + PE+ +HR GRTGRAG +G +V ++ +   +     ERL +  
Sbjct: 320 GLDIDELPHVVNYELPNVPEDYVHRIGRTGRAGHEGTAVSLVDREEMKLLTGIERLIKRQ 379

Query: 364 NVSVVWE--------PAPSVEAIRER 381
              V  E        P  S + I +R
Sbjct: 380 IPRVEVEGFTGWQAQPGDSTDDINDR 405


>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 374

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 200/368 (54%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +  
Sbjct: 61  QHLQLDKE-AARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 LLRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL
Sbjct: 180 KQTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 506

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 189/376 (50%), Gaps = 3/376 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + Q +  AL E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  EN R +P      L ++PTRELA Q+                V  GGV+++R+ 
Sbjct: 61  LHRLSLENRR-APRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTNTVVFGGVNINRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P 
Sbjct: 120 RAIAPGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQMLDLGFIHALKRIVKMLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA  Y  + V+V +         +D + +      +   + ++
Sbjct: 180 RRQSLFFSATMPKNIAGLADQYLTNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    +  +VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV 
Sbjct: 240 LRDPKIERVLVFTRTKHGADRVVRGLDKAGIVGAAIHGNKSQPQRERALAAFRDGSCRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE+ +HR GRT RAG +GM++       +     
Sbjct: 300 VATDIAARGIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGMAISFCNDEERAYLLD 359

Query: 359 LFREANVSVVWEPAPS 374
           + R     V     P 
Sbjct: 360 IERTTRQKVPVAGFPE 375


>gi|300722435|ref|YP_003711723.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus nematophila ATCC 19061]
          Length = 498

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 194/382 (50%), Gaps = 8/382 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I  A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +   
Sbjct: 3   FESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +        AL + PTRELA QVG  +        +   V  GGVS++ +   L
Sbjct: 63  LSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMMKL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D      +++SH++ ++LDEAD MLD+GF  DI  IL+  P KR+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAKRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I  LA     D V V +A  N     I      V    +   +  ++  
Sbjct: 183 NLLFSATFSDEIKNLANKLLNDPVSVEVARRNSASEQIAQSIHFVDKKRKGELLSYMIGS 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+   ++  ++L +      A+ G  SQ  R+ AL   + G+ R  +AT
Sbjct: 243 QNWQQVLVFTRTKHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +  + + R
Sbjct: 303 DIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLLKDIER 362

Query: 362 EANVSVV------WEPAPSVEA 377
                +       +EP PS++A
Sbjct: 363 LLKREIPRIAIQGYEPDPSIKA 384


>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 151/470 (32%), Positives = 236/470 (50%), Gaps = 44/470 (9%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 86  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 146 RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 205

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 206 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 265

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+ +A+V +
Sbjct: 266 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQL 325

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 326 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 385

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 386 VATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQL-- 443

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                                  D +++++ PL + ++  D+         +HD      
Sbjct: 444 ----------------------ADIEKLIKRPLEVQTLALDK-----PSRHRHD------ 470

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                 R G  A E     +   G  R RD+ R             G   
Sbjct: 471 -----ERGGERAGERSGERAGERGGRRERDEHRGASARRSGGSERGGHHR 515


>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 442

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/388 (31%), Positives = 199/388 (51%), Gaps = 4/388 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I +A+SE+GY   + +Q   + P ++  DV+ +AQTG+GKT  F L L  
Sbjct: 2   TFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + + + A+   AL + PTRELA QV   ++       +   V  GGV ++ +   
Sbjct: 62  RL--ASGKPASANQVRALVLTPTRELAAQVADSVQTYGKFLPLRSTVVFGGVKINPQMMR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+V TPGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  I+   PKKR
Sbjct: 120 LRRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRMLDMGFIHDIRKIISFLPKKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I +LAK    + + ++++  N   + +      V    +   +  ++ 
Sbjct: 180 QNLMFSATFSTDIRSLAKTLVNNPIEISVSPANSTATTVKQWIAPVDKKKKPELLSQLIN 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+   ++ T+ L        A+ G  SQ  R+ AL   + G  ++ +A
Sbjct: 240 THQWTQVLVFSRTKHGANKLTRHLESVGLSAAAIHGNKSQGARTKALADFKAGDKQILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + 
Sbjct: 300 TDIAARGLDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGATGEAISLVSADEVEHLWNIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           R    ++  E     E   +  A ++ Q
Sbjct: 360 RLIGKNLPREVVEGFEPQHDVPASKLHQ 387


>gi|149639807|ref|XP_001507068.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Ornithorhynchus anatinus]
          Length = 742

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/478 (26%), Positives = 227/478 (47%), Gaps = 14/478 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   +  KD+   A TG+GKT AF L +   L+ +
Sbjct: 170 NLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGKTAAFALPVLERLIYK 229

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L   + V   + +GG+ V  +   L+ G 
Sbjct: 230 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRAGP 286

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 287 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIKMCSHHRQTML 346

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    V +  +    R+  +  +L  
Sbjct: 347 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVVSALLTR 406

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  V +AT
Sbjct: 407 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDVLVAT 466

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 467 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 526

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M      +H   +I    
Sbjct: 527 TAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLRLEAEEKEM------QHSEAQINTAK 580

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             + +    A EE       S  +R ++               K      L  G K+ 
Sbjct: 581 RLLEKGKGEANEEPRRSWFQSREERKKEKIAKALQEFDLALRGKKKRKKFLQDGKKKG 638


>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282604|gb|EDT48028.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 533

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 142/452 (31%), Positives = 235/452 (51%), Gaps = 18/452 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+ + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEAILAAVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +  +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKID------TSRNLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLEHVETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +  N+ K+   V IA++      ID   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPEPIKRIGVNFMKNPEHVKIAAKELTTELIDQYYLRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA--- 356
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N        
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLAII 354

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               ++  +    +   E   + + +  +  +R   D     +I+  +   V +   +  
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADETIRANIEKFKGDAVKL-AQEFT 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           PE++A   L I    +  P+ +  V +   + 
Sbjct: 414 PEELA---LYILTLTVQDPDTLPKVEIAREKP 442


>gi|237793963|ref|YP_002861515.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
 gi|229261675|gb|ACQ52708.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 202/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA+Q+    E       +   V  GGVS + + + 
Sbjct: 62  NLSKDKKANKNPRPIRALVLAPTRELAIQIAESFECYGKYINLKSVVIFGGVSQNPQTKV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIEFFVLDEADRMLDMGMIHDVKKIISKLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPVSSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEDHPYKIRHINENEVKK 388


>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
          Length = 474

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 181/370 (48%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  KD++ SAQTG+GKT  F L L   L A  
Sbjct: 8   LSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQRLTANQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    +   V +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIGDGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 368 IPRMAIPGYE 377


>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 459

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 214/469 (45%), Gaps = 16/469 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I  AL+ + Y   T +Q   + P ++ +D+   AQTG+GKT  F L  
Sbjct: 1   MTSFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R +P      L +APTRELA Q+ +        T + V+   GGV ++++ 
Sbjct: 61  IHHLLTYPHRPTP-RGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I+V TPGRL D I  + L +  ++  VLDEAD+M+D+GF   +  +    P 
Sbjct: 120 RDLSQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPS 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA  +  D V V++A +      +   A  V   ++   + ++
Sbjct: 180 RRQNLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQKEKQALLHHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++      A++F  T+    R  + L     +  A+ G  SQ +R+ ALQ  R G+ R+ 
Sbjct: 240 IKTSDIDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ E+ + PE  +HR GRT RAG +G+++  I  + +     
Sbjct: 300 VATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRD 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R         P P       R+  + +Q P    S      +  D    + D      
Sbjct: 360 IERVTRTRAEPMPLPEGFNELVRNLPKPVQPPRDTGS------RGRDPNRQRQDAR---- 409

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              R    G    +        +G        R F+    S    KG+ 
Sbjct: 410 ---RQPSGGQPRGDRGPRRDAPAGEGAEGQRKRRFRPRNKSVGAHKGAV 455


>gi|290580897|ref|YP_003485289.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 517

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 237/461 (51%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + I  A+++ G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELHLAEDILSAVAKVGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   N      +   AL IAPTRELAVQ   EL     +  V V    GG S+ ++ +
Sbjct: 61  NKIDVIN------NVVQALVIAPTRELAVQSQEELFRFGREKKVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V I ++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIVAKELTTDLVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   +   +  L+    ++    DEK   +      D EK+AA 
Sbjct: 355 EKLTKKRMKGMKPATAQEAFQASKKVALKK---IERDFADEKIRSNFDKFTKDAEKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +    ++   +  R+    FK  G  +
Sbjct: 412 FSPEELAQYILTLTVQDPEMLPKVEIAREKPLPFKFAGKGK 452


>gi|238028205|ref|YP_002912436.1| putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
 gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
          Length = 480

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 134/384 (34%), Positives = 213/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHSYAKHTALRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA  Y  +   + +A  N   +++      +A  D+  A+V +
Sbjct: 192 ARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  ++L        A+ G+ SQ ER  AL+  + G     
Sbjct: 252 IRDRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEVEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +P      +R R 
Sbjct: 372 IEKLIKRDLPLQPLAIEAPVRMRR 395


>gi|330829717|ref|YP_004392669.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
 gi|328804853|gb|AEB50052.1| ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
          Length = 466

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/400 (30%), Positives = 203/400 (50%), Gaps = 3/400 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E+GY   + +Q+  +   L  +D++ +AQTG+GKT  F L +   L+   
Sbjct: 8   LAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLMESK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + SP +   AL + PTRELA QVG  +        +   V  GGVS++ +    + G  
Sbjct: 68  RKVSP-NRVRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRRGLD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V  PGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 127 VLVACPGRLIDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALMPKKRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  LA     +   + +A  N     I+        +++   + +++  +  + 
Sbjct: 187 ATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHLVTSNNWQQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 247 VLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    S
Sbjct: 307 GLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQS 366

Query: 367 VVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMV 404
           +  E     EA RE   +  R +  PL  +     E++  
Sbjct: 367 IPCEQVAGFEASRETLDNIARGIGAPLRKEPRDPSEQRRA 406


>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7822]
 gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
          Length = 482

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 148/483 (30%), Positives = 232/483 (48%), Gaps = 23/483 (4%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I F+N+       + L   G+ N T +Q+  +   L   DV+  +QTG+GKT A+ L 
Sbjct: 1   MTISFKNLGLSDARVQHLESIGFTNPTDIQQKAIPLLLEGHDVVGQSQTGTGKTAAYSLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +         + +  AL + PTRELA QV + ++       + +    GG S+ R+
Sbjct: 61  LLERIDRH------SRSVQALILTPTRELAQQVAQAIKDFVDDRRLFILTVYGGQSIDRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IVVGTPGR+ D +  K L++  L+  VLDEADEML +GF DD++ IL  +P
Sbjct: 115 IRSLERGVQIVVGTPGRVIDLLERKKLSLDELQMAVLDEADEMLSMGFIDDVKKILQQTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
             R+   FSAT+ P I  L   + K  V V+          ID    ++     +  A+ 
Sbjct: 175 STRQTACFSATMPPEIKRLIDQFLKSPVVVSATQHEATPERIDQHIYMVPRGWSKLKALQ 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     ++AI+F  T+ + +  T  L E    V    G LSQ +R   +Q  R+G+ +
Sbjct: 235 PILEIEDPESAIIFVRTKQTATELTGKLQESGHHVDEYHGNLSQAQRERLVQRFREGKIK 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+AARG+D+ DL  VI+ +L  N E  +HR GRTGRAG+ G ++ +I    +R  
Sbjct: 295 LVVATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLIEPIDRRML 354

Query: 357 ERLFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            ++       +     P    VEA R    Q  +++ L  + +      +V  L A++DP
Sbjct: 355 RQIEHRVGHRLDVSQLPDRSLVEAKRLSKLQTQVKETLAGERMAS-FLPLVRELSAEYDP 413

Query: 414 EKIAAGFLRIHRAGLCA---------PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             IAA  L++     C          P+E  P  ++  + R+    +  K     R   +
Sbjct: 414 LAIAAAALQMVYDQDCPNWMKTDWEVPKETAPKPMLKQQRRYNKSGKPSKFEKSGRHGDR 473

Query: 465 GSS 467
              
Sbjct: 474 KPV 476


>gi|237713858|ref|ZP_04544339.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
 gi|229446014|gb|EEO51805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
 gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
           1b]
          Length = 374

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 200/368 (54%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +QE  + P L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + +  +      AL + PTRELA+Q+   ++     T +   V  GGV+   +  
Sbjct: 61  QHLQLDKE-AARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 LLRKGIDILVATPGRLLDLMSQGHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+  +I +L K+  K+ V++ I  ++     I      V   ++   +++IL
Sbjct: 180 KQTLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQLVYFVEKKEKSQLLISIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ ++F  T+ +  +  K+L +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 SKAEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           TIGR4]
 gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae R6]
 gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
           TIGR4]
 gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974]
 gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
           1974M2]
 gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|61223743|sp|P0A4D7|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|61223744|sp|P0A4D8|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
           Full=Exported protein 9
 gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
 gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP9-BS68]
 gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae SP195]
 gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae MLV-016]
 gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
 gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
 gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS455]
 gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           SP-BS293]
 gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS458]
 gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS457]
 gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           BS397]
 gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
 gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
 gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47368]
 gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 524

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 227/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 525

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 233/451 (51%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V IA++      +D   + V   ++ + + +++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTHLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E   +   Q   + ++     ++I+G+ +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|312113545|ref|YP_004011141.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218674|gb|ADP70042.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 494

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 221/469 (47%), Gaps = 12/469 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  A+   GY   T +Q   +   L  +DV+  AQTG+GKT +F L L +
Sbjct: 2   TFKDLKLSDKVLAAIDAAGYTTPTPIQAQAIPFALEGRDVVGIAQTGTGKTASFVLPLLN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L + PTRELA QV    E L ++  + VA+ IGGVS   + + 
Sbjct: 62  MLEQGRAR---ARMPRSLILEPTRELAAQVAEAFETLGSQHKLTVALLIGGVSFDDQEKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I++ TPGRL DH     L ++ +  +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LERGADILIATPGRLLDHFGRGKLLMNAVDYLVIDEADRMLDMGFIPDIERICKLLPPSR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI----V 236
           + L FSAT+ P I  L   + K+  +V +++      +I  +        +        +
Sbjct: 179 QTLFFSATMPPEIQKLTDQFLKNPEQVRVSAPATAAKNITQKLKFSPADSKTKRHVLREL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   +NAI+FC+ +  V+   K L +H F   AL G+L Q++R+  L+  R G   
Sbjct: 239 MRSEVSTIQNAIIFCNRKRDVAVLHKSLVKHGFNAGALHGDLDQRQRTATLEAFRKGEIT 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
              A+DVAARG+D+P++  V + ++  +PE+ +HR GRTGRAGR G +  ++     +  
Sbjct: 299 YLAASDVAARGLDIPEVSHVFNFDVPISPEDYVHRIGRTGRAGRDGYAAMIVTPKEMKGV 358

Query: 357 ERLFREANVSVVW-EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
             +       + W +  PS E +   D     +     +       +  +  +A  +P +
Sbjct: 359 RAIENLCKAKIEWIDGEPSTENLAATDFSERRERSRRGERGGAGRGRSKEAAVATTEPRE 418

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                +R  R       E+      +  +R   + R       SR + +
Sbjct: 419 --TAEVRPIRQRAEPAGEVRSAPAAATAERPARNRRNGDGSSVSRYHRE 465


>gi|15889136|ref|NP_354817.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15156946|gb|AAK87602.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 503

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 145/471 (30%), Positives = 234/471 (49%), Gaps = 40/471 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   + P L ++D+   AQTG+GKT +F L +
Sbjct: 1   MTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---- 234
            R+ L FSAT+ P I  LA  + ++  R+ +A  +     +  R V     D +      
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVAAHNKDYEKRAVLR 237

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +        KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+
Sbjct: 238 DLVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQ 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +
Sbjct: 298 LTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 357

Query: 355 RAERLFREANVSVVW-------EPAPSVEAIRERDAQRILQDPLF--------------L 393
             + + +     + W        PAP +E+      +R  ++                 +
Sbjct: 358 YLDAIEKLIAEKIEWLSGDLSSLPAP-MESFESNSGRRGTKERSGRGRDRNRRDAPASPV 416

Query: 394 DSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           ++I  D + +VD  +A H  +K+ A            PE+    S  + R+
Sbjct: 417 ENINQDAQSVVDTDIAAHGEDKVKA---------ERRPEKTPRNSERNSRN 458


>gi|212712156|ref|ZP_03320284.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
 gi|212685203|gb|EEB44731.1| hypothetical protein PROVALCAL_03238 [Providencia alcalifaciens DSM
           30120]
          Length = 477

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 202/385 (52%), Gaps = 9/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I  A++E GY + T +Q+  +   L  KD+L SAQTG+GKT  F L +
Sbjct: 29  LTSFSDLALNEEILRAINELGYESPTPIQQQAIPAVLAGKDLLASAQTGTGKTAGFTLPI 88

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +N R +      AL + PTRELA QV   ++       +   V  GGVS++ + 
Sbjct: 89  LQKLV-DNPRGNNRRPIRALILTPTRELAAQVAENVKEYSRHLKIRSFVVFGGVSINPQM 147

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +++ TPGRL D      +++S ++  VLDEAD MLD+GF  DI  ++   PK
Sbjct: 148 MKLRGGVDVLIATPGRLLDLEHQNAVDLSQVEVFVLDEADRMLDMGFIHDIRRVITKLPK 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  LA     + V + +A  N     +     LV  + +   +  +
Sbjct: 208 KRQNLLFSATFSDEIKQLASKLLNNPVSIEVAPRNSASEQVTQYVHLVDKNRKAELLSFM 267

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV 
Sbjct: 268 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDIRVL 327

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   GM+V ++  +  +  + 
Sbjct: 328 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRAEATGMAVSLVCIDEAKLLKD 387

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +    S+       +EP PS++A
Sbjct: 388 IEKLLKKSIPLMAIEGYEPNPSIKA 412


>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 504

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 197/383 (51%), Gaps = 5/383 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +     + +A+SE GY   T +Q   +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 2   TFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMID 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L + PTRELA QV    E       + +A+ IGGVS   + + 
Sbjct: 62  KLSRGRAR---ARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH     + ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LDRGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  L   +  +  R+ +A  +   ++I    +      + + +  ++ 
Sbjct: 179 QTLFFSATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRDGKRDVLQRMIE 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               KNAI+FC+ +  VS   + L++      A+ G+L Q  R+  L   R+G  R+ +A
Sbjct: 239 EDNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARG+D+PD+  V + ++ S+ E+ +HR GRTGRAG+ G +V +  +   +    + 
Sbjct: 299 SDVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDA 383
           +     +         A  E DA
Sbjct: 359 KLIGNPIPSGDVDVPAAPAEADA 381


>gi|330865776|gb|EGH00485.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 500

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRALQPSIPRPAADRAPDEFRDDE 478


>gi|289625029|ref|ZP_06457983.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 516

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRALQPSIPRPAADRAPDEFRDDE 478


>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503322|ref|YP_003725262.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 524

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 227/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|255307197|ref|ZP_05351368.1| ATP-dependent RNA helicase [Clostridium difficile ATCC 43255]
          Length = 497

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/533 (23%), Positives = 238/533 (44%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L   GY   + VQ  ++   L+ ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLGYNIPSRVQREVIPKLLKGQNLVVRSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  + +         AL + PTRELA+QV  E+  +     V  +   G  S+  +
Sbjct: 61  LCENINVDYNNI------QALIVVPTRELALQVKDEISDIGRLKKVRCSAIFGKQSIKDQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +V+DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRILDHINRGSIKLENVKYLVIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +     ++  
Sbjct: 175 KEKIVSLFSATIDEEIKYICEKYMLDYSVINIEENESDTNQKTRQIDDKIIKANGREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ ++FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  ++ 
Sbjct: 235 LLKELIYSENPKSVVIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKNQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR G  G ++ ++ +  +
Sbjct: 295 KFNILVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKGNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       +          + + +  RI    +  +       K V         
Sbjct: 355 KYIENIETYIGYKI--------NELTDIEQSRITHGKVLFEEYSKGILKKVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKVDKNSYKSKDIKLNIESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKYK 481


>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 214/460 (46%), Gaps = 17/460 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+SE GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L A  
Sbjct: 12  LAEPLLRAISESGYTTPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHRLSAAP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A  P  L + PTRELA QV   +            V  GGV ++ + + L+    
Sbjct: 72  AANPKAGRPRCLILTPTRELAAQVEESVRTYGKHLPTTSMVMFGGVGINPQIQALKKRVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+  K L++S ++ ++LDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHVGQKTLDLSGVEILILDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA     +   V +A  N     +      VA   + + +V++++ +    
Sbjct: 192 ATFSDEIRSLANGLLHNPGCVEVARRNTASELVQQSVYSVAQKQKRDLLVHLVKQNDWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + LA+H     A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSLPVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V  +    ++    + R    +
Sbjct: 312 GLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSFVDSEERQHLTAIERLIKRT 371

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  E  P+                  +  +  +E         +       A   R  R 
Sbjct: 372 IDREALPA----------------FAIAPVDPNESDARPPRQPRQPSRHNNANAPRQART 415

Query: 427 GLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKG 465
              A  + TP S      R RD D+   +      +  +G
Sbjct: 416 DRPAGRQATPPSPSRAPVRSRDADNFGNRAPRSEVEAKRG 455


>gi|325265712|ref|ZP_08132401.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324982843|gb|EGC18466.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 449

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 198/380 (52%), Gaps = 3/380 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L +KD++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALQAAGYDSPTPIQAQSIPAALADKDIMASAQTGSGKTAAFLLPSLQKIVKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P  L + PTRELA QV +  +              +GG S  ++ + +   
Sbjct: 69  SEK--PGKGPRVLVLTPTRELAAQVEKNAQIYAKNMKWVRSVTLVGGSSFGQQIKAMSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+R   ++   L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L+
Sbjct: 127 IDIIVATPGRLMDHMRSGRVDFDRLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + I  E++Q    +        + ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIDEQLLYCDDKNHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N      ++ R   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGLAISFAEVNEYMAVHKIERYIG 366

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             +       +E  R+R+  
Sbjct: 367 RKLPEVLIEGLEPTRKRNKN 386


>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 151/459 (32%), Positives = 234/459 (50%), Gaps = 13/459 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   I +AL+E+GYV+ T +Q   +   L+ +DV+ +AQTG+GKT  F L +   
Sbjct: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77

Query: 62  LLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LL   +   SPA  P+ AL + PTRELA QV   +      T +   V  GGV +  +  
Sbjct: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV+ TPGRL DH++ K +N+S  + +V+DEAD MLD+GF  D++ I++  PK+
Sbjct: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT SP I  LA ++Q + V + +A  N    ++      V  + + +A+  I+
Sbjct: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF +T+   SR  + L     +  A+ G+ +Q ER  AL+  + G+  V +
Sbjct: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +      R    +
Sbjct: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377

Query: 360 FREANVSVVWEP----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +              AP     R   A+R  +      S +GD     D         +
Sbjct: 378 EKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGDR---SDRGERSRSSRE 434

Query: 416 IAAGFLRIHR--AGLCAPEEITPVSLVSGRDRFRDDSRA 452
             A  +R  +       P E + V  VS +     ++R 
Sbjct: 435 GGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRP 473


>gi|315606927|ref|ZP_07881933.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
 gi|315251308|gb|EFU31291.1| ATP-dependent RNA helicase RhlE [Prevotella buccae ATCC 33574]
          Length = 375

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 197/374 (52%), Gaps = 2/374 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +AL  + Y   T +Q+  +   L  +D+L  AQTG+GKT AF + + 
Sbjct: 1   MTFNELNISKPILKALELKEYETPTPIQQKAIPIGLEGRDLLGIAQTGTGKTAAFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L    D         AL + PTRELA+Q+    +     T +   V  GGVS + + +
Sbjct: 61  QQLAKSADDNRRRD-IKALILTPTRELAIQIEECFKDYSKFTRLRCCVIFGGVSQNGQVK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I++ TPGRL D I    + + H++  VLDEAD MLD+GF  DI+ ++   PK+
Sbjct: 120 ELERGVDILIATPGRLLDLISQHIITLEHIRHFVLDEADRMLDMGFIHDIKKLIPLLPKR 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  L+K+      RV +A  +     I+ R   V    + + +V++L
Sbjct: 180 RQTLLFSATMPETIAKLSKSLLYKPARVEVAPVSSVVDTIEQRLYFVEKPQKTDLLVSVL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G ++A+VF  T+    R  + L     +  A+ G  SQ  R  AL   + G+ RV +
Sbjct: 240 KNDGNRSALVFSRTKHGADRIARKLKARHIECEAIHGNKSQNARQRALTNFKSGKTRVIV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L++VI+ +L    E  +HR GRTGRAG  G+++    Q  +     +
Sbjct: 300 ATDIAARGIDIANLQMVINYDLPDVAETYVHRIGRTGRAGNSGVALTFCTQEERPMVRDI 359

Query: 360 FREANVSVVWEPAP 373
            +     +    +P
Sbjct: 360 QKLTGKKLPIAQSP 373


>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 419

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 200/387 (51%), Gaps = 7/387 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   Q +  A+   GY   T +QE  + P L+ +D+L  AQTG+GKT AF L +  
Sbjct: 2   TFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPMLC 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV        A   + VA+ IGG++   +   
Sbjct: 62  RLEQGRAR---ARMPRTLILEPTRELAAQVEASFAKYGANHKLNVALLIGGMAFGDQEAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA +++ TPGRL D      L +++++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 IMRGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNI 238
           + L FSAT+ P IT L + +  + VR+ +A  +   + I     A       R+     +
Sbjct: 179 QTLFFSATMPPEITRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAEKRETLRRLL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 KNAI+FC+ +  V+   + L +H F   AL G++ Q  R  +L   ++G   + 
Sbjct: 239 RGAENFKNAIIFCNRKRDVAILHRSLDKHGFSAGALHGDMDQPARMASLDAFKNGDVALL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G +V ++    ++  ++
Sbjct: 299 VCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGTAVTLVTGEDRKYLDQ 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +       + WE     E     DA R
Sbjct: 359 IETLIGNKIDWEGPRLDELPPAEDAPR 385


>gi|168491523|ref|ZP_02715666.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493488|ref|ZP_02717631.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|182684538|ref|YP_001836285.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|221232344|ref|YP_002511497.1| DEAD/DEAH box helicase [Streptococcus pneumoniae ATCC 700669]
 gi|225855026|ref|YP_002736538.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
 gi|182629872|gb|ACB90820.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
           CGSP14]
 gi|183574224|gb|EDT94752.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576330|gb|EDT96858.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Streptococcus pneumoniae CDC3059-06]
 gi|220674805|emb|CAR69378.1| DEAD box helicase family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|225724107|gb|ACO19960.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae JJA]
          Length = 524

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 145/450 (32%), Positives = 227/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRIEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K    V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      SVE   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASVEESFQSKKQVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 435

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 186/371 (50%), Gaps = 2/371 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  N+ + I +AL   GY   T +QE  +   L  +D+L  AQTG+GKT AF + +  
Sbjct: 2   LFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+          AL + PTRELA+Q+    +       +   V  GGV    +   
Sbjct: 62  LLNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++ TPGRL D +    +N+  ++  VLDEAD MLD+GF  D++  +   P KR
Sbjct: 122 LHRGVDILIATPGRLLDLMNQGFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     D ++V +   +     I+     V   D+ N +++IL+
Sbjct: 182 QTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNLLIHILQ 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF  T+    R  K L +   +  A+ G  SQ  R  AL   +    R+ +A
Sbjct: 242 DKTIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+ EL + PE  +HR GRTGRAG  G+S        +   + + 
Sbjct: 302 TDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGISFSFCDGEEKEFLDDIE 361

Query: 361 REANVSVVWEP 371
           +   + +  + 
Sbjct: 362 KLIALKIPVQE 372


>gi|257483568|ref|ZP_05637609.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 514

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 22/477 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              AA   R  R          P          R + RA +         +    F 
Sbjct: 428 ATAAATGERPARQ---------PREKKPREGTPRSEQRASQPSIPRPAADRAPDEFR 475


>gi|170750207|ref|YP_001756467.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656729|gb|ACB25784.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 506

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 3/376 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  + Q +  ALSE GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L + +DR +P      L ++PTRELA Q+                V  GGV++ R+ 
Sbjct: 61  LHRL-SLSDRRAPRRGCRVLVLSPTRELANQIAESFTDYGRHLSYTTTVVFGGVTISRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P+
Sbjct: 120 RALAPGVDILVATPGRLIDLVDRRSLTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA  Y  D V+V +         ++   + V    +   + +I
Sbjct: 180 KRQSLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVEQEVIFVHTGAKQALLGHI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    +  +VF  T+    R  + L +      A+ G  SQ +R  AL   +DG  RV 
Sbjct: 240 LRDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALAAFKDGSCRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE+ +HR GRT RAG  G+++       +     
Sbjct: 300 VATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRD 359

Query: 359 LFREANVSVVWEPAPS 374
           + R     V     P 
Sbjct: 360 IERVTRQKVPVAGFPE 375


>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 446

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLVQNE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      L +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIAGYEPDPSIKA 384


>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
 gi|217985744|gb|EEC52085.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
          Length = 392

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 200/367 (54%), Gaps = 3/367 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GYVN T +Q   +   L  KD+L  AQTG+GKT AF + +   L A+
Sbjct: 27  NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  ++  AL + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 87  K---SLNNSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRTQVNMLHKGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +++++  VLDEAD MLD+GF  DI+ +L   PK+++ L+F
Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K  V+++I  ++     I+     V   ++   +++IL     +
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL +      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    + +    
Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDIQKLTGK 383

Query: 366 SVVWEPA 372
            +     
Sbjct: 384 KLSRAEL 390


>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 505

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 193/377 (51%), Gaps = 8/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + E ++  G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 98  VKSFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 158 IVHVNAQ-PILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 217 RDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+ +  +  +V I S + + +  I     +V+ + + N +V 
Sbjct: 277 DRQTLYWSATWPKEVEQLARQFLYNPYKVVIGSADLKANHAIRQHVDIVSENQKYNKLVK 336

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +          ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 337 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +      +  R A
Sbjct: 397 IMTATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTASNARFA 456

Query: 357 ER---LFREANVSVVWE 370
           +    +  EA   V  E
Sbjct: 457 KELISILEEAGQKVSPE 473


>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 504

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/382 (36%), Positives = 215/382 (56%), Gaps = 5/382 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A+++ GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L+  EN   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +
Sbjct: 63  QRLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQYAKYTKLRSTVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R  L+FSAT SP I  LA +Y +D V + +A  N   S ++ R   V+  D+  A+ +
Sbjct: 183 KTRTTLLFSATFSPEIKRLASSYLQDPVTIEVARPNETASTVEQRFYSVSDDDKRYALRS 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    + A VF +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   +
Sbjct: 243 LLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATALHGDKSQDERLKALEAFKRGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGIAVTLVTNHDARLVG 362

Query: 358 RLFREANVSVVWEPAPSVEAIR 379
            + +     +  EP P +E  R
Sbjct: 363 EIEKLIKKKINVEPCP-MEDFR 383


>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 506

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 192/369 (52%), Gaps = 2/369 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+    VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +  
Sbjct: 2   TFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL ++PTRELA+Q+   ++     T +     +GGVS   + R 
Sbjct: 62  LLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K+
Sbjct: 122 LQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKK 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   IT L +    + V+V I   +     I+    L+   ++   +  +++
Sbjct: 182 QTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VF  T+    R  + L +      A+ G+ SQ  R  AL   + G  RV +A
Sbjct: 242 DPSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++     +       + 
Sbjct: 302 TDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRDIE 361

Query: 361 REANVSVVW 369
           +    S+  
Sbjct: 362 KLIGKSIPE 370


>gi|254883642|ref|ZP_05256352.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294775629|ref|ZP_06741138.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
 gi|254836435|gb|EET16744.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 4_3_47FAA]
 gi|294450571|gb|EFG19062.1| ATP-dependent RNA helicase RhlE [Bacteroides vulgatus PC510]
          Length = 434

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 199/418 (47%), Gaps = 9/418 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +     TGV  AV  GGV    +  
Sbjct: 61  QRLYQSDHK----KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  ++ +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  ++L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +   + +          +    AQ      L++    + +    K   D    K   
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGSKSNGDYWRRKKQA 414


>gi|150002994|ref|YP_001297738.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
 gi|149931418|gb|ABR38116.1| ATP-dependent RNA helicase DeaD [Bacteroides vulgatus ATCC 8482]
          Length = 434

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 199/418 (47%), Gaps = 9/418 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +     TGV  AV  GGV    +  
Sbjct: 61  QRLYQSDHK----KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  ++ +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  ++L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +   + +          +    AQ      L++    + +    K   D    K   
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGEKAQAGKTEELKEKAKANKVYRGSKSNGDYWRRKKQA 414


>gi|322833775|ref|YP_004213802.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168976|gb|ADW74675.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 470

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L + L   N
Sbjct: 8   LSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLNMLSHTN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F       AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  AQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N   + I+     V    +   +  ++     K 
Sbjct: 188 ATFSDEIKGLASKLLTNPASVEVARRNTASAQIEQSVHFVDKKRKRELLSQMIGEGDWKQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALEGYEPDPSIKA 384


>gi|291614701|ref|YP_003524858.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584813|gb|ADE12471.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 450

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 140/385 (36%), Positives = 203/385 (52%), Gaps = 6/385 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL+E GYV  T +Q   +   L   D++  AQTG+GKT AF L +   LL   
Sbjct: 11  LAPPILKALTEAGYVTPTPIQAQAIPLALEGHDLMAGAQTGTGKTAAFALPMLQKLLPHA 70

Query: 67  D-RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               SPA  P+ AL + PTRELAVQV   ++     T +   V  GGV +  +   L+ G
Sbjct: 71  SASTSPAKHPVRALILVPTRELAVQVEESVKAYAKHTNLRSLVVYGGVDIKTQTPHLKTG 130

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF   ++ IL   P++R+ LM
Sbjct: 131 VEILVATPGRLLDHIEQKTVLLNQVQMLVLDEADRMLDMGFMPALKRILALLPRQRQSLM 190

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  L++++      + +A  N    +I  +  LV  S +   +  +LR   A
Sbjct: 191 FSATFSNEIKKLSEDFMNYPTLIEVARSNASAENITQKVYLVEQSGKHQLLAQLLRGDDA 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T+ + SR  K L        A+ G+ SQ ER  AL   + GR  V IATDVA
Sbjct: 251 KQVIVFTKTKLTASRLAKQLQREGVSADAIHGDKSQLERMQALDAFKQGRVAVLIATDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ E+    E+ +HR GRTGRAG  G ++ ++    ++    + +   
Sbjct: 311 ARGLDIDSLPMVINYEIPHAAEDYVHRIGRTGRAGASGTAISLVSPEEEKYLLEIEKLIK 370

Query: 365 VSVVWE----PAPSVEAIRERDAQR 385
             +  E    PAP     R    +R
Sbjct: 371 KEIQKERVDMPAPDARPHRAEPRER 395


>gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
          Length = 499

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 190/377 (50%), Gaps = 8/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + E + + G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 94  VKSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPA 153

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 154 IVHVNAQ-PILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQV 212

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 213 RDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRP 272

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+ +  +  +V I SE+ + +  I     +V    + + +V 
Sbjct: 273 DRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVK 332

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +          ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 333 LLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSP 392

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A
Sbjct: 393 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFA 452

Query: 357 ER---LFREANVSVVWE 370
           +    +  EA   V  E
Sbjct: 453 KELISILEEAGQRVSSE 469


>gi|228477095|ref|ZP_04061733.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
 gi|228251114|gb|EEK10285.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           salivarius SK126]
          Length = 528

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQG--DEKKMVDVLLA-KHDP 413
                  +     P+ +     +++ A + ++     ++I+   D+ K   V LA +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQAKKKVALKKIERDFADEAIRSNFDKFKGDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDSETMPEVEIAREKP 442


>gi|307721994|ref|YP_003893134.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
 gi|306980087|gb|ADN10122.1| ATP-dependent RNA helicase DbpA [Sulfurimonas autotrophica DSM
           16294]
          Length = 452

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/535 (27%), Positives = 241/535 (45%), Gaps = 93/535 (17%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + + +   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ L   
Sbjct: 3   FATLPLSPQMLQTIESLGYKEMTPIQAQSLPSILEGRDIIAQAKTGSGKTAAFGIGLLHH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           L  +  R        +L + PTRELA QV +EL  L      + + +  GG S  R+   
Sbjct: 63  LNVKKFRV------QSLVLCPTRELADQVAKELRRLARFQHNIKILMLSGGESFGRQLGS 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L + AHI+VGTPGR+  H+  + L +S+L  +V DEAD MLD+GF ++IE +L   PK+R
Sbjct: 117 LAHQAHIIVGTPGRVLKHLNKESLELSNLNTLVFDEADRMLDMGFIEEIESVLAFVPKER 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  ++K  Q +A+ V  A++  Q+  +         +D+ + ++ IL 
Sbjct: 177 QTLLFSATYDDEILQISKRIQNNALHVKTAAQEVQNKIVQEFYE---TNDKVDTLIKILA 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +N IVF +T+       + L ++    +A+ G+L Q ER++ L    +    V +A
Sbjct: 234 NYKPENVIVFTNTKLEAKELAESLVQNKIDALAIHGDLEQYERNDVLVQFANKSCPVLVA 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL +V++ +L  + E   HR GRTGRAG +G++V +             
Sbjct: 294 TDVAARGLDIKDLSMVVNYDLPHSMETYTHRIGRTGRAGAEGIAVTLY------------ 341

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                              E +AQ+I       +  + DEK +            + A  
Sbjct: 342 ------------------NEYEAQKI-------EPYEEDEKHVF-----------LDASA 365

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           L+  +     P+                                      +  G K K  
Sbjct: 366 LKKEQGFEMKPQ---------------------------------YVTLVIEGGKKDKIR 392

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           A  ++  L   +G+   SIG I +    ++V +    +D   + +K  K    K+
Sbjct: 393 AGDILGALTGDAGLQGSSIGKIDLYDRQSYVAIENSLIDEAYKKLKNGKIKNRKF 447


>gi|15672332|ref|NP_266506.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723219|gb|AAK04448.1|AE006272_2 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405930|gb|ADZ63001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 547

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 225/451 (49%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I   L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A N       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKIDASNP------AIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N       +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDP 413
                  +     P+ E   +      + D L   S    +       K    LL K D 
Sbjct: 355 ENMTKKPMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDA 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           +++ A  L   +  +  P+    V + + R 
Sbjct: 415 KELVALLL---QGRVKDPDNQEEVKITAERP 442


>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
 gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
          Length = 521

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 232/451 (51%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      S E   +   Q   + ++     ++I+G+ +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFADETIRGNFEKFGKDARKLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
 gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
          Length = 471

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/471 (29%), Positives = 218/471 (46%), Gaps = 33/471 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     R+ +A +      I+   VL   S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RAVLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+ R+ +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCI 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS---IQGDEKKMVDV 406
              ++  + + +     +     P+    +     R  + P   D       D+++ V  
Sbjct: 358 PRDEKALDAIEKLIQKDIPRLENPARTEEKPEAKPRREEKPARADKPARSDADKREPVKR 417

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
              K DP K                 E        G  R R D R  +V G
Sbjct: 418 EADKRDPVK----------------READKRDRKGGERRDRKDDRGARVVG 452


>gi|157693344|ref|YP_001487806.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
 gi|157682102|gb|ABV63246.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus pumilus
           SAFR-032]
          Length = 480

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 143/531 (26%), Positives = 239/531 (45%), Gaps = 68/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL    +   T VQ   L+    ++D++V +QTGSGKT A+GL +   +    
Sbjct: 11  LSDDLKQALKALHFHTPTPVQHETLSVAFSKQDLIVKSQTGSGKTAAYGLPICEMVDWAE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA+QV ++L  L     +  A   G      ++ +L    H
Sbjct: 71  NK------PQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIFGKAPFQAQKIELAQKNH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DH+    L++ +LK  VLDEADEML++GF D +  I+   P KR  ++FS
Sbjct: 125 IVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIDQVSSIIQYLPPKRMSMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  L++ + +    + IA E      I +  +      + + +   +      +
Sbjct: 185 ATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+T+  V+  T  L E       + G + Q++R   +   ++G  R  IATD+AAR
Sbjct: 245 CIIFCNTQDRVNELTMKLDEWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VIH +L    E  +HR+GRTGRAG+ G ++  + +N +   + L  EA + 
Sbjct: 305 GIDVSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTRNAKPLIDELKEEAGID 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
              +P P+ E   E+  +R      F + I+   +K       + D  K+          
Sbjct: 365 FKTQPYPTKED-AEQHVER------FEEKIETPIQKENKQAGVEKDIMKL---------- 407

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                                                     +  + G K+K  A   + 
Sbjct: 408 ------------------------------------------YF-NGGKKKKLRAVDFVG 424

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+    IG I +Q   T+V++      L+   ++    KG QLK 
Sbjct: 425 TIAKIDGVAFDDIGIITIQDTKTYVDILNGKGPLVLNAMRHTTIKGKQLKV 475


>gi|237725257|ref|ZP_04555738.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D4]
 gi|229436523|gb|EEO46600.1| ATP-dependent RNA helicase DeaD [Bacteroides dorei 5_1_36/D4]
          Length = 434

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 126/415 (30%), Positives = 202/415 (48%), Gaps = 9/415 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++ + I +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L 
Sbjct: 1   MTFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +        AL + PTRELA+Q+G   +      GV  AV  GGV    +  
Sbjct: 61  QRLYQSDHK----KGIKALILTPTRELAIQIGENFDQYAKYAGVKHAVIFGGVPQKAQVD 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 117 ALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPAR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA +   +  +V +   +     I      V   ++ + ++++L
Sbjct: 177 RQTLFFSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ ++F  T+    +  K+L +      A+ G  SQ  R  AL   +D   RV I
Sbjct: 237 KNPEIESVLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ EL +  E  +HR GRTGRAG  G+++           + +
Sbjct: 297 ATDIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDI 356

Query: 360 FREANVSVV---WEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVDVLLAK 410
            +   + +      P  +VE ++ +  +   L++    +      K   D    K
Sbjct: 357 QKLIGLQIPVVKDHPWVTVEGVKAQAGKTEELKEKAKANKAYRGSKGNGDYWRRK 411


>gi|239623931|ref|ZP_04666962.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521962|gb|EEQ61828.1| ATP-dependent RNA helicase dbpA [Clostridiales bacterium 1_7_47FAA]
          Length = 481

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 205/392 (52%), Gaps = 11/392 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ Q I +AL+  GY   T +QEA++   L  +D+   +QTG+GKT+AF + +   
Sbjct: 5   FEAYNLSQPILDALTLLGYTTPTPIQEAVIPKALNGQDIAARSQTGTGKTLAFAVPICEQ 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + E       + P AL + PTRELAVQV RE+  +  K  + V    GG  + ++ + L
Sbjct: 65  AVWEE------NLPQALVLEPTRELAVQVSREIFLVGRKKRLKVPAVFGGFPIDKQIQTL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +  +HIV GTPGR+ DH+R   L +S ++ +V+DEAD MLD+GF D++  IL   PK R 
Sbjct: 119 RQKSHIVTGTPGRVMDHLRRGSLCLSKVRFLVIDEADLMLDMGFLDEVRQILSLLPKDRS 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+   +  L      +AV +++  E +           V   ++ NA  NIL  
Sbjct: 179 TFLFSATLDRQVRELMGEAVSEAVFISMEDEVKVPPATQQSVYQVLQENKYNAFKNILIK 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++FC TR  V+   + L         + GE+ Q ER   +   R G  R  IAT
Sbjct: 239 ENPDSCMIFCGTREMVNVLFQKLRRDRIFCGMIHGEMEQAERLKHVDAFRRGGFRYLIAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D   + LV++ +  +  E  +HR GRTGR G+ G +V ++ ++  R  +++  
Sbjct: 299 DVAARGVDFEGISLVVNYDFPTGRETYVHRIGRTGRNGQSGRAVSLVTEDELRMLKKVEE 358

Query: 362 EANVSVVWEPAPSVEAIRERD---AQRILQDP 390
               ++   P P  +   E++    QR   +P
Sbjct: 359 YMETTLPVNPLPEPDQAEEKEFWALQRKKAEP 390



 Score = 62.3 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 11/129 (8%)

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD-------DSRAFKVGGGSRDNFKGSSWFSLSV 473
           LR+ +      E   PV+ +   D+  +         +A    G            S+  
Sbjct: 350 LRMLKKVEEYMETTLPVNPLPEPDQAEEKEFWALQRKKAEPKAGKDAALNHSILRLSIGG 409

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDLLRRTVKLDK 529
           G K K     ++  +C   G+  + IG I ++  LT+VE+        ++ L+      K
Sbjct: 410 GRKSKMRTGDIVGTICSIDGVEAEDIGIIDIRESLTYVEILNRKGPMVLEQLQTKTIKGK 469

Query: 530 GIQLKYLGG 538
             +++  G 
Sbjct: 470 VRKVRTAGS 478


>gi|312863656|ref|ZP_07723894.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
 gi|311101192|gb|EFQ59397.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           vestibularis F0396]
          Length = 529

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 235/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQG--DEKKMVDVLLA-KHDP 413
                  +     P+ +     +++ A + ++     ++I+   D+ K   V LA +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQAKKKVALKKIERDFADEAIRSNFDKFKGDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPEMMPEVEIAREKP 442


>gi|268680158|ref|YP_003304589.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618189|gb|ACZ12554.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 436

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 118/398 (29%), Positives = 210/398 (52%), Gaps = 5/398 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE   + + I +A+ E GY   T VQ  ++   L  KDV+ +AQTG+GKT A+ L L  
Sbjct: 2   VFEKLGLSEPIRDAVRELGYTKPTPVQNKVIPLVLEGKDVMATAQTGTGKTAAYALPLLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  + + +    AL + PTRELA QVG  ++       +  A   GGV    + + 
Sbjct: 62  ILNKKTQKSTTSKVVRALILVPTRELASQVGASVQAYGKNVPLSSAAIYGGVKFTPQAKK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++ TPGRL +H++   +++S ++ VV DEAD +LD+GF D+++ +L   PKKR
Sbjct: 122 LDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILDMGFWDEVQTLLGLFPKKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FS  +S ++  L++   K  V V I ++      ++    LV    +   +  ++ 
Sbjct: 182 QTLLFSVGLSKSVKRLSEVSLKKPVTVAINNQGDFAKKVEQTLYLVDKERKCELLSFMIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+ S     + L     + + L G+ +  +R+ A+   ++   RV +A
Sbjct: 242 THNWHQVLVFTKTKQSADEVGEYLNASGLKTLVLHGDKAHSKRTQAIHAFKENAIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ DL  VI+ EL  + E+  HR+GRTGRAG++G ++ ++ Q  + + + + 
Sbjct: 302 TDIASRGLDIEDLPYVINYELPGDAEDYTHRAGRTGRAGKEGRAISLVAQEEKNKFKEIE 361

Query: 361 REANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDS 395
           +    ++  E  P  E    + +   +  +Q  +  + 
Sbjct: 362 KILKYTIKTEFYPGFETKEWVEKEAKKHTIQAKIDREK 399


>gi|323221202|gb|EGA05628.1| ATP-dependent RNA helicase DeaD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
          Length = 393

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 151/379 (39%), Gaps = 55/379 (14%)

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+ +     + L    +   AL+G+++Q  R   L+ ++DGR  + IATDVAAR
Sbjct: 12  AIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 71

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +    +R    + R   ++
Sbjct: 72  GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 131

Query: 367 VVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAG 419
           +     P+ E + +R  ++    +Q  L    +        K        + D E +AA 
Sbjct: 132 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAA 191

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD--------------DSRAFKVGGGSRDNFKG 465
            L++ +     P  + P + +  +  FRD                   +     R +   
Sbjct: 192 LLKMAQG--ERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDVGD 249

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLL 521
              + + VG     E R ++  +     I+ + IG I++    + +E+      + +   
Sbjct: 250 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHF 309

Query: 522 RRTVKLDKGIQLKYLGGEKPD-----------FRGYKSSGFK-----------------S 553
            RT  L+K + ++ LG   P            F G +  G +                 S
Sbjct: 310 TRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGDGRRFS 369

Query: 554 KNSQDGATKRFKRFKGASK 572
              ++    R     G  +
Sbjct: 370 GERRESRGPRRDDSTGRRR 388


>gi|91772311|ref|YP_565003.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|91711326|gb|ABE51253.1| DEAD-box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 463

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 200/368 (54%), Gaps = 3/368 (0%)

Query: 3   IFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+     +  AL+E GY + T +QE  +   L  +D++  AQTG+GKT AF L +  
Sbjct: 2   SFDNLNLIFPLQRALTEEGYTSPTPIQELSIPHLLDNRDMIGIAQTGTGKTAAFILPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A + + +P   P  L +APTRELA Q+G         T     V  GGV    + R 
Sbjct: 62  NMSAIHKKATPKK-PRVLVLAPTRELAAQIGESFATYGKYTRYKHTVVFGGVGQTPQVRA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G   +V TPGRL D I+   + +S+++  VLDEAD MLD+GF +D+  I+D  PKKR
Sbjct: 121 LSRGVDCLVATPGRLLDLIQQGHIKLSNVEYFVLDEADRMLDMGFLNDVNKIVDMLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+SP I+TLA+    +  +V +  +      I+     V   +++  ++++LR
Sbjct: 181 QSLFFSATMSPEISTLARKMLSNPAQVEVTPQATTVERIEQFIFFVDSDNKNELLLHLLR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   ++ T++L +      A+ G  SQ  R+  LQ  + G+ RV +A
Sbjct: 241 GEHLDCVLVFTRTKHRANKVTEMLNKSNINAGAIHGSKSQTHRTKTLQNFKSGQLRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ D+  VI+ +L + PE+ +HR GRT RAG +G +      + +     + 
Sbjct: 301 TDIAARGIDIEDISHVINYDLPNIPESYVHRIGRTARAGAEGTAYSFCAADERDFLRDIE 360

Query: 361 REANVSVV 368
           +  ++ + 
Sbjct: 361 KLTDMEIE 368


>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
 gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
          Length = 506

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 219/471 (46%), Gaps = 13/471 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  NI  VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL ++PTRELA+Q+   ++     T +     +GGVS   + R 
Sbjct: 62  LLNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K+
Sbjct: 122 LQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKK 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   IT L +    + V+V I   +     I+    L+   ++   +  +++
Sbjct: 182 QTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VF  T+    R  + L +      A+ G+ SQ  R  AL   + G  RV +A
Sbjct: 242 DSSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++     +       + 
Sbjct: 302 TDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRDIE 361

Query: 361 REANVSVVWEPA---PSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +    S+        P   A+R         DP     S +  + K      AK  P+  
Sbjct: 362 KLIGKSIPEVKDHAFPMSGALRATKV-----DPAPKSGSSKPGKGKSAASRPAK--PKTD 414

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           AA   +   A              +GR    D  R  K     +   +  +
Sbjct: 415 AARKPKADAARNPKTGAPRQSRQDAGRKPKTDAPRQSKTNSARKPMTEAVT 465


>gi|226315226|ref|YP_002775122.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098176|dbj|BAH46618.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 513

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 232/488 (47%), Gaps = 27/488 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I  ALS  G+   T++Q+  +   L+ +D++  AQTG+GKT AFG+ L
Sbjct: 1   MATFNDFGLHHSIVRALSNMGFEEATAIQDQTVPVALQGRDLIGQAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   +           + + PTRELAVQV  E+  +     +      GG  + R+ 
Sbjct: 61  IERMDETSGNI------QGVVLTPTRELAVQVAEEINKIAQFKNISALPIYGGQDITRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    I+V TPGR  DH+R + + +  ++ VVLDEADEML++GF DDI+ IL   P+
Sbjct: 115 KALKKRPQIIVATPGRFMDHMRRRTIRLDAIEVVVLDEADEMLNMGFIDDIKEILKEVPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+  AI  +A+ +  +   + + ++     +I    + VA   + + +  +
Sbjct: 175 SRQTLLFSATMPRAIQEIAQQFMNEPTIIQVKAKEVTVPNIAQEYMEVAEKQKFDVLCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + AI+F  T+  V   ++ L +  +    + G+L+Q +R + L+  ++G   V 
Sbjct: 235 LDIHSPELAIIFGRTKRRVDELSEALTKRGYGAEGIHGDLNQAKRDSVLRKFKEGTIEVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG+ G+++  +          
Sbjct: 295 VATDVAARGLDISGVTHVFNFDIPQDSESYVHRIGRTGRAGKTGLAITFVTSREIDHLRL 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHDPEK 415
           + R  N  +     PS+    E   Q++  D +   S + D    K + + LL   D   
Sbjct: 355 IERTTNRRMERRAVPSMAEALEGQ-QKMTVDKILEASGRDDLSAYKTLAEQLLEDVDSVT 413

Query: 416 IAAGFLRIH-RAGLCAPEEITPVSLVS--------------GRDRFRDDSRAFKVGGGSR 460
           + +  L++  +     P  +T  + +               G        R  +   G  
Sbjct: 414 LVSAALKLLTKEPDMTPVRLTEEAPLRVGKKKLPPKGKGGFGSGSGFGGKRPSRPRNGEY 473

Query: 461 DNFKGSSW 468
               G S 
Sbjct: 474 RPRGGESR 481


>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
          Length = 397

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 5/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y +D   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +    ++  E    ++  R R  +R
Sbjct: 372 IEKLIKRTLSLETL-ELDLPRHRHDER 397


>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
 gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
 gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 496

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 3/369 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   + +  A+   GY   T +Q+  + P L  +DVL  AQTG+GKT AF L +  
Sbjct: 2   TFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILH 61

Query: 61  TL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L    +   +       L + PTRELA Q+    +     TG+  AV  GGV  H + +
Sbjct: 62  RLSAGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSWAVIFGGVGQHAQEQ 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D +    ++   L+  VLDEAD MLD+GF  D++ I+ + P K
Sbjct: 122 TLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRMLDMGFIHDVKRIISALPPK 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+ P I +LA+   K  VRV +  E+     ++ +   V    + + +V++L
Sbjct: 182 RQTLFFSATMPPEIQSLAQGILKSPVRVEVTPESTTAETVEQKMFFVEREQKRHLLVHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF  T+   +R  K LA       A+ G  SQ  R  AL   +DG  RV +
Sbjct: 242 GDASIRRALVFTRTKHGANRVAKHLASSRISAEAIHGNKSQNARERALGAFKDGSCRVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  +  VI+ +L + PE+ +HR GRTGRAG  G ++       +     +
Sbjct: 302 ATDIAARGIDIEGITHVINFDLPNIPESYVHRIGRTGRAGAVGTALSFCDGEERAYLRDI 361

Query: 360 FREANVSVV 368
            R     V 
Sbjct: 362 ERTIRRQVP 370


>gi|322516252|ref|ZP_08069184.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
 gi|322125316|gb|EFX96681.1| ATP-dependent RNA helicase DeaD [Streptococcus vestibularis ATCC
           49124]
          Length = 528

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQG--DEKKMVDVLLA-KHDP 413
                  +     P+ +     +++ A + ++     ++I+   D+ K   V LA +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQAKKKVALKKIERDFADEAIRSNFDKFKGDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPGMMPEVEIAREKP 442


>gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
           thermophilus ND03]
          Length = 528

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEQPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++G+  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRIIRDFKNGQIDIMV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +     P+ +     +++ A + ++     ++I+ +  K  D  +    +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQSKKKVALKKIERDFADETIRANFDKFKDDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPETMPEVEIAREKP 442


>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
 gi|167704901|gb|EDS19480.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
          Length = 436

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 187/374 (50%), Gaps = 1/374 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + +  A+ E  Y   + +QE  +   +  +D+   A+TG+GKT AF L + 
Sbjct: 1   MKFSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   ++         AL +APTRELA+Q+    E +  +  +  AV  GGV    +  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVT 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  +++ TPGRL D      +++ H++ +VLDEAD MLD+GF  DI  IL   P++
Sbjct: 121 KINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRR 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   I  L  +   D +++ I+S N     I+     V   ++   ++ +L
Sbjct: 181 HQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 NAIVF  T+ +V    K L +       + G+ SQ  R  AL   ++ + RV +
Sbjct: 241 ENPQIYNAIVFVRTKRNVDTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+D+AARGID+ +L  VI+ +L    EN +HR GRT RAG  G ++       +   + +
Sbjct: 301 ASDIAARGIDIDELTHVINFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDI 360

Query: 360 FREANVSVVWEPAP 373
            +  N  +     P
Sbjct: 361 QKFINQDIPVVDNP 374


>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
 gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
           6249]
          Length = 525

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 230/451 (50%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      S E   +   Q   + ++     + I+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFAKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
 gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M143]
          Length = 520

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 146/461 (31%), Positives = 226/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKQVALKK---IERDFADEVIRGNFEKFAKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FSPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|329116940|ref|ZP_08245657.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
 gi|326907345|gb|EGE54259.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus parauberis
           NCFD 2020]
          Length = 537

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 229/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKVRTDENII------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPAN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKEPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISDVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLLA---KHDP 413
                  +      + E     +++ A + ++     ++I+ +  K  D  +    +  P
Sbjct: 355 ENLTKKQMTPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFDKFKDDAIQLASEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPADQPEVEIAREKP 442


>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 476

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 128/416 (30%), Positives = 212/416 (50%), Gaps = 6/416 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     +  A+SE+GY N T +Q+  +   L+  DV+  AQTG+GKT  F L +  
Sbjct: 6   SFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQ 65

Query: 61  TLL-AENDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L    N   SPA  P  AL + PTRELA+QV   +        +  AV   GV++  + 
Sbjct: 66  KLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNIDVQI 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +++G  I+V TPGRL DH++ K L +S ++ ++LDEAD MLD+GF  DI+ I+   P 
Sbjct: 126 AAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRMLDMGFLPDIKQIIQMLPD 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT S  I  LA    K  + + +A +N     I +    V   ++   ++++
Sbjct: 186 QRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQEFLIDM 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++    +  ++F  T+       + L         + G+ +Q +R+ AL   + G  R+ 
Sbjct: 246 IKKKNLQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFKCGLIRIL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ EL +NPE+ +HR GRTGRAG KG ++  + +        
Sbjct: 306 VATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSREETVLLGG 365

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           + R   + +  E   S   ++ +  +   +  +  +  +       +  L+K    
Sbjct: 366 IERLLGIKIQVEE--SNSGLKNQQTEFPNKTKIIEEQKKSRAFSFKNESLSKRSKR 419


>gi|322373478|ref|ZP_08048014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278520|gb|EFX55589.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 528

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  DKIRTEENTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +++++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V I ++   + ++D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQG--DEKKMVDVLLA-KHDP 413
                  +     P+ +     +++ A + ++     ++I+   D+ K   V LA +  P
Sbjct: 355 ENLTKKRMKGLKPPTAQEAFQAKKKVALKKIERDFADEAIRSNFDKFKGDAVKLAQEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPETMPEVEIAREKP 442


>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 526

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 229/461 (49%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSENILATVEKAGFVEPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +          +   AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  DKIDTNR------NLVQALVIAPTRELAVQGQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALRSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPET 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + ++   V +A++      +D   + V   D+ + +  ++
Sbjct: 175 RQTLLFSATMPEAIKRIGVKFMQNPEHVKVAAKELTTDLVDQYYIRVKEQDKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    ++   + G+L Q +R   L+  ++    + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIHGDLDQGKRLRVLRDFKNDNIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKHGQSITFVAPNEMGYLSII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + +   E    +       ++    DE    +    K D  K+AA 
Sbjct: 355 EKLTKKRMKGLKPATAD---EAFKAKKKVALKKIERDFADEAIRANFDKFKGDAVKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  GG  
Sbjct: 412 FTPEELALYILNLTVKDPDTLPKVEIAREKPLPFKPSGGGF 452


>gi|193214029|ref|YP_001995228.1| DEAD/DEAH box helicase domain-containing protein [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087506|gb|ACF12781.1| DEAD/DEAH box helicase domain protein [Chloroherpeton thalassium
           ATCC 35110]
          Length = 431

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 191/367 (52%), Gaps = 4/367 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+I     I  AL E GY   T++Q A +   +  KD+L +AQTG+GKT AF L +   
Sbjct: 6   FESISLNPSILRALKELGYETPTAIQAAAIPEAILGKDILATAQTGTGKTAAFALPILHR 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R     AP AL + PTRELA+Q+   +        +   V +GGV  H + + L
Sbjct: 66  L--GENRSYDIRAPRALILTPTRELALQIDNNIRLYARYLRLRTGVIMGGVPAHPQIKML 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL D      + +  ++  VLDEAD MLD+GF DDI  I    P+  +
Sbjct: 124 RRNPDILVATPGRLIDLFDQGFIGLDQIQTFVLDEADRMLDMGFIDDIRRIESLQPRDHQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+SP I  LA    ++ VR+ +A  +    +I  + + V  +++   + N+ + 
Sbjct: 184 TLLFSATLSPEIEALASRMLREPVRIEVAPVSSVADNITQKVLFVEQNNKRELLHNLFKE 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K A+VF  T+   +   + L        A+    SQ+ R  AL +   G+  V +AT
Sbjct: 244 NDIKRALVFTRTKQRANHVAEQLIRLGISADAIHSSKSQRARQRALMLFDRGKINVLVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL  +PEN +HR GRT RAG  G ++     +  R  + + +
Sbjct: 304 DIAARGIDVDGISHVINYELPDDPENYVHRIGRTARAGASGTALSFCDADEVRMLKGIEK 363

Query: 362 EANVSVV 368
               S+ 
Sbjct: 364 LTKSSIA 370


>gi|293399873|ref|ZP_06644019.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306273|gb|EFE47516.1| ATP-dependent RNA helicase DbpA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 477

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 134/537 (24%), Positives = 245/537 (45%), Gaps = 69/537 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  +   I +AL +  Y  +  +QE ++   L+ +DV+V ++TGSGKT +F + +  
Sbjct: 3   FKEFA-LHTDILKALEKLHYEQVLPIQEQVIPEILKGRDVIVRSRTGSGKTASFAIPIVQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ E         P A+ + PTRELA+Q+  + + + A   +      G      + +D
Sbjct: 62  ELIWEE------REPQAIILTPTRELALQIKEDFDNIGAYRRIKTVAIFGKQPYKFQIQD 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+  AH+VVGTPGR+ DH+  + L   H++ V++DEADEML++GF + ++ I +  P  +
Sbjct: 116 LKQRAHVVVGTPGRILDHLERETLKTGHIRYVIIDEADEMLNMGFIESVQSIFNYFPGNK 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              +FSAT+   I  LA+ + K+   + ++ E   ++ I + A  V    + + +  +L 
Sbjct: 176 ITCLFSATMPQPIQELAEGFMKEPKLITLSEETTVNAAITHYAYEVKEKQKLSFLKQLLC 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+  V    + L      V  L G + Q++R   ++  + G+ R+ +A
Sbjct: 236 KEQPASCIIFARTQEGVKTICEELYALDMCVDKLHGGMLQEDRIGNIRDFKKGKIRILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  +I+ ++ +  E  LHR GRTGR    G+++  I +    R   L 
Sbjct: 296 TDVAARGIDVQDISHIINYDMPNQKETYLHRIGRTGRQSASGVAITFINEYDGERKAELE 355

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +          IRE+D  R           + + KK     L K          
Sbjct: 356 EYLGYPL---------EIREKDEVR-----------KQEVKKETIEPLTK---------- 385

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                           +    G++  +D  + +  GG ++    G               
Sbjct: 386 -------------PFALREDKGKEVHKDTMKLYLNGGKTKKIRAG--------------- 417

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
              ++  +C   G++ + IG I++Q + ++V++       + + ++    KG +LK 
Sbjct: 418 --DIVGAICEIQGVSAEDIGVIQIQDNQSYVDILNGKGKQVLKALQQGTIKGKKLKV 472


>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
 gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
          Length = 525

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 144/451 (31%), Positives = 232/451 (51%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + KD   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E   +   Q   + ++     ++I+G+ +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKQVALKKIERDFADEAIRGNFEKFAKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|297847866|ref|XP_002891814.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337656|gb|EFH68073.1| hypothetical protein ARALYDRAFT_474570 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 501

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 200/402 (49%), Gaps = 18/402 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + E + + G+   T +Q       ++ +D++  A+TGSGKT+++ L  
Sbjct: 98  VKSFRDVGFPDYVLEEIKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTISYLLPA 157

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E     + + +      GGV    + 
Sbjct: 158 IVHVNAQ-PILAPGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQV 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  L+K +  +  +V I S + + +  I     +++ S + N +V 
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +          +VF  T+    + T+ L    +  +++ G+ SQ ER   L   R G++ 
Sbjct: 337 LLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A
Sbjct: 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFA 456

Query: 357 ER---LFREANVSVVWE----------PAPSVEAIRERDAQR 385
           +    +  EA   V  E          P P +   R+R ++R
Sbjct: 457 KELSNILEEAGQKVSPELASMGRSTAPPPPGLGGFRDRGSRR 498


>gi|319648702|ref|ZP_08002913.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
 gi|317389121|gb|EFV69937.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus sp. BT1B_CT2]
          Length = 516

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 227/472 (48%), Gaps = 10/472 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L   +  E+          A
Sbjct: 1   MGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEKINPESPNI------QA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGTPGRL D
Sbjct: 55  IVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLD 114

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           HI  + + +  +  VVLDEADEML++GF +DIE IL + P + + L+FSAT+   I  +A
Sbjct: 115 HINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIA 174

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +  +   V + ++    S+I    + V    + + +  +L     + AIVF  T+  V
Sbjct: 175 ERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRV 234

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ L    +    + G+L+Q +R  AL+  + G   V +ATDVAARG+D+  +  V 
Sbjct: 235 DELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVY 294

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + +     +    AP+++ 
Sbjct: 295 NFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQTTKRKMDRMKAPTLDE 354

Query: 378 IRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH-RAGLCAPEEI 434
             E   Q  +     +  ++           LL  HD   + A  +++  +     P  +
Sbjct: 355 AIEGQQQVTVDRIRTIIEENNLNFYMTAAAELLEDHDSVTVVAAAIKMMTKEPDNTPVRL 414

Query: 435 TPVSLVS-GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           T  + +   R++      + +  GG        S +     S  + +   ++
Sbjct: 415 TEEAPLRTKRNKNHHHRSSKRRDGGGYRGKNNRSSYDKKRSSNDRRQKNHII 466


>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
 gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
          Length = 493

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 209/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +  ++ ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +  
Sbjct: 18  TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQK 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  L ++Y    V + +A+ N   + I   A  +    +  A+V++
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMPSDAKRAAVVHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G    IVF +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V 
Sbjct: 258 VKSRGLNQVIVFSNTKIGTARLARDLERDGVKAESIHGDKTQADRMKALEAFKAGELEVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R    
Sbjct: 318 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFLLD 377

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     V          +  R  +R
Sbjct: 378 IEKLIKREVPRGTLDVPAELVARSHRR 404


>gi|70725957|ref|YP_252871.1| hypothetical protein SH0956 [Staphylococcus haemolyticus JCSC1435]
 gi|123660708|sp|Q4L7W0|Y956_STAHJ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SH0956
 gi|68446681|dbj|BAE04265.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 503

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 229/471 (48%), Gaps = 14/471 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       E L   G+   T +Q+  +   L  KD+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +       S   AL +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQ-------SGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI TL + + K    V   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL ++D  
Sbjct: 354 QIEDSNGRRMNALRPPHRKEVLKAREDDIKDKVKNWMSRES-EARLKRISSELLEEYDST 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           ++ A  L+         E          R   +      + GG   + F  
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRQGKGNGSRRGGKRNNKFDN 463


>gi|183598226|ref|ZP_02959719.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
 gi|188020395|gb|EDU58435.1| hypothetical protein PROSTU_01610 [Providencia stuartii ATCC 25827]
          Length = 445

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 194/384 (50%), Gaps = 8/384 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + I  A++E GY   T +Q+  +   L   D+L SAQTG+GKT  F L +
Sbjct: 1   MTSFSDLALNEEILLAINELGYEAPTPIQQQAIPAVLDGHDLLASAQTGTGKTAGFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L++            AL + PTRELA QV   ++       +   V  GGVS++ + 
Sbjct: 61  LQKLISTPRIGKDRKPIRALILTPTRELAAQVAENVKEYSRHLRIRSFVVFGGVSINPQM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL D      +N+S ++ +VLDEAD MLD+GF  DI  ++   PK
Sbjct: 121 MKLRGGVDILIATPGRLLDLEHQNAVNLSQVEILVLDEADRMLDMGFIHDIRRVISKLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  LA     + V + +A  N     +      V    +   +  +
Sbjct: 181 KRQNLLFSATFSNEIKQLANKLLDNPVTIEVAPRNSASEQVTQFVHHVDKKRKAELLSYM 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL   + G  RV 
Sbjct: 241 IGRENWQQVLVFTRTKHGANRLAEHLNKDGVKAAAIHGNKSQGARTRALADFKSGDVRVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   GM+V ++  +  +  + 
Sbjct: 301 VATDIAARGLDIEQLPYVVNFELPNVAEDYVHRIGRTGRADTTGMAVSLVCVDELKLLKD 360

Query: 359 LFREANVSVV------WEPAPSVE 376
           + +     V       +EP PS++
Sbjct: 361 IEKLLKKPVPVMAIEGYEPDPSIK 384


>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 524

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 145/461 (31%), Positives = 225/461 (48%), Gaps = 10/461 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      S E   +      L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKHVALKK---IERDFADETIRANFEKFGKDARKLAAE 411

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           F     A       +     +   +  R+    FK  G   
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGF 452


>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
 gi|167700298|gb|EDS16877.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
           43183]
          Length = 372

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 124/362 (34%), Positives = 195/362 (53%), Gaps = 3/362 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY N T +Q   +   L  KD+L  AQTG+GKT AF + +   L   
Sbjct: 7   NITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQHLQVL 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R     +  AL + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 67  KNRD---KSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNMLHKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +++ +++  VLDEAD MLD+GF  DI+ +L   PK+++ L F
Sbjct: 124 DILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L  +  K  V++ I  ++     I+     V   ++   +++IL     +
Sbjct: 184 SATMPDTIIALTNSLLKQPVKITITPKSSTVDTIEQTIYFVEKKEKSKLLISILHKTEGQ 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL++      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 244 SVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    + +    
Sbjct: 304 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDIQKLTGK 363

Query: 366 SV 367
            +
Sbjct: 364 KL 365


>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 435

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 201/374 (53%), Gaps = 3/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL+  GY   T +QE  +   L ++D+L +AQTG+GKT AF + +   L  E+
Sbjct: 8   LNPSILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPILDLLCREH 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + +    AL ++PTRELA+Q+    +       +   V  GGVS   +   L+ G  
Sbjct: 68  GQSTGSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVSRLREGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + +++SH+   VLDEAD MLD+GF  D+  +++  P+ R+ L+FS
Sbjct: 128 ILVATPGRLLDLMNQRHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQNRQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA    K+  +V++A  +     ++ +   V   ++ + +V++L+    ++
Sbjct: 188 ATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLKTADMES 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L +      A+ G  SQ  R  AL+  +  +  V +ATD+AAR
Sbjct: 248 VLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  VI+ +L + PE  +HR GRTGRAG+ GM+     +        + R     
Sbjct: 308 GIDVTELSHVINYDLPNEPETYVHRIGRTGRAGQSGMAFSFCDEEEHDYLRTIERLIGKH 367

Query: 367 VVWE---PAPSVEA 377
           +  E   P P+  A
Sbjct: 368 IPVENDHPYPATMA 381


>gi|17228718|ref|NP_485266.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17130570|dbj|BAB73180.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 513

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 220/477 (46%), Gaps = 22/477 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q   E L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L  + 
Sbjct: 10  ISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQ 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A+ + PTRELA+QV   +      +G+      GG S+ R+   L+ G H
Sbjct: 70  ------KAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKRGVH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L +  +K  VLDEADEML +GF DD+E IL  +P+ R+  +FS
Sbjct: 124 IVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTALFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+ P+I  L   + +  V V +       + I+  A L+     +  A+  IL     +
Sbjct: 184 ATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  TR + +  T  L      V    G+LSQQ R   L   R  + R  +ATD+AA
Sbjct: 244 TALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    
Sbjct: 304 RGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHVRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--------------PLFLDSIQGDEKKMVDVLLAKH 411
           +      P+   I  R   ++ +               P+  + I+  + + +     + 
Sbjct: 364 NWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAALQI 423

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             ++    +L    A +      TP   + G+ R     R       S +N      
Sbjct: 424 AYDQTRPAWLS-TDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDER 479


>gi|160914649|ref|ZP_02076863.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
 gi|158433189|gb|EDP11478.1| hypothetical protein EUBDOL_00656 [Eubacterium dolichum DSM 3991]
          Length = 472

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 150/535 (28%), Positives = 248/535 (46%), Gaps = 69/535 (12%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  + Q I EAL   GY    +VQEA++   L ++DV+V A+TGSGKT +F + +  
Sbjct: 3   FKDF-GLEQGIMEALDILGYHKPFAVQEAVIPHLLAKQDVIVQAKTGSGKTASFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+           P +L +APTRELA+Q+  E + + AK  +      G      +++D
Sbjct: 62  QLIWNE------KLPQSLILAPTRELAMQIQTEFDQIGAKKRIKSLAIYGKFPFRFQKQD 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ   H++  TPGR+ DH+R    + S ++ VV+DEAD MLD+GF D++E +LD  PKKR
Sbjct: 116 LQQRTHVICATPGRILDHLREHTFDASSIRYVVIDEADIMLDMGFLDEVEAVLDYLPKKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              +FSAT+   I  LA  +  D + + + ++   H +I++    +   D++ A++++L 
Sbjct: 176 TTALFSATMPKEIIQLANRFLHDPLSIAMEAKQDVHQNIEHYVYKLNQQDKETALLHLLG 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++AI+F  T+  V    +VL  H  +V  L G L Q+ER   L+  R G  R+ +A
Sbjct: 236 KETVESAILFVRTQERVENIYQVLKAHHIRVTKLHGGLLQEERLANLKAFRSGEKRILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+ D+  VI+ +     E  +HR GRT R    G ++  +    Q +  +L 
Sbjct: 296 SDVAARGIDIADISHVINVDFPDKKETYIHRLGRTARKDTSGKAISFVTARDQEKLMQLE 355

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                S+         ++R+   + + QD       Q  E+K           E   A  
Sbjct: 356 DYLGYSL---------SMRDASTELLTQDYDLSYLSQSSERK-----------EDKGAAL 395

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                                      K      +  G  +K  
Sbjct: 396 ------------------------------------------RKDVLRIYIGAGKAKKLR 413

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           A  +   LC+  GI    +G I+VQ   ++V++     ++  +++K  KG +++ 
Sbjct: 414 AGDIAGALCQLEGICFDDVGVIQVQEHHSYVDILHGKGEVALKSLKRIKGKEVRV 468


>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
 gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
          Length = 523

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 237/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSADLLAEVDKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQHVETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPKHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD--AQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +   +PA + EA + +   A + ++     ++I+G+  K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKHVALKKIERDFADETIRGNFDKFSKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILTLT---VQDPDSLPEVEIAREKP 442


>gi|320330891|gb|EFW86865.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 625

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDE 478


>gi|228474931|ref|ZP_04059660.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|314935968|ref|ZP_07843318.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|228271163|gb|EEK12543.1| cold-shock DEAD box protein A [Staphylococcus hominis SK119]
 gi|313655974|gb|EFS19716.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 503

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 135/463 (29%), Positives = 235/463 (50%), Gaps = 15/463 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L E G+   T +Q+  +   L  KD+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVKTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    +    S   AL +APTRELA+QV  +L        + V    GG+ + R+ 
Sbjct: 61  IE-------KVVGKSGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKRGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI TL + + K    V   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    +  +     P  + +   RE D +  +++ +  +S +   K++   LL ++D  
Sbjct: 354 QIEEVNDRRMKALRPPHRKEVLKAREEDIKDKVKNWMSRES-EDRLKRISSELLEEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           ++ A  L+ +  A      ++T    ++ + R    +++ + G
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKSRNNKGNQSRRGG 455


>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
 gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [marine gamma
           proteobacterium HTCC2207]
          Length = 549

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 218/481 (45%), Gaps = 21/481 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     I +A++ +GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +
Sbjct: 1   MTTFKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL+   R  P +    L + PTRELA QVG  +        +  AV  GGV ++ + 
Sbjct: 61  LQ-LLSAGKRAQP-NQVRTLILTPTRELAAQVGESVATYGKHMSLSSAVVFGGVKINPQM 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL D      +  ++L+ +VLDEAD MLD+GF  DI+ I+   PK
Sbjct: 119 MKLRRGVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRMLDMGFIHDIKRIISLLPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT S  I  LAK    + + +++   N     +      V    +   +  +
Sbjct: 179 RRQNLMFSATFSDDIRKLAKGLVHNPIEISVTPRNATAPTVTQSIYTVDKKQKAGVLTRL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +    A+VF  T+   ++ TK L        A+ G  SQ  R+ AL   + G  R+ 
Sbjct: 239 IHDNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFKAGEVRIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       
Sbjct: 299 VATDIAARGLDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSD 358

Query: 359 LFREANVSVVWEPAPSVE------------AIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + R     +  E     E             +R    ++ L            + K+   
Sbjct: 359 IERLTQKLLPREVMDGFEPSHDVPETFLDRPVRTNKQRKALNSQTNSRGKSKPDPKVKRS 418

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
               H P+  A      H+ G  +       S    RD  RD +R     G    N  G+
Sbjct: 419 STYSHGPKPGA-----KHKTGGGSHSGQRDGSRDGNRDGNRDGNREGNRDGNRDGNRDGN 473

Query: 467 S 467
            
Sbjct: 474 R 474


>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
           MED217]
          Length = 442

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 201/379 (53%), Gaps = 2/379 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   I +AL+++GY + T +Q   +   L+ KD+L SAQTG+GKT AF + + 
Sbjct: 1   MTFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +           AL + PTRELA+Q+   ++     TG+   V  GGV    + +
Sbjct: 61  QQIYDKVGSGKGKRKLKALIVTPTRELAIQIEDNVKEYSKYTGIQSTVIFGGVKQASQVQ 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  ++  TPGRL D ++   +++  ++ +VLDEAD+MLD+GF  DI+ IL   P K
Sbjct: 121 AMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQMLDMGFIHDIKKILKLVPHK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  L+K    D  +V+IA E      +D     V+  ++   + +++
Sbjct: 181 RQSLFFSATMPKEIIDLSKLILGDFEKVSIAPEKPTAERVDQAVYFVSKKNKAKLLKHLI 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+   ++  KVL +   Q  A+ G  SQ  R  AL   ++G+  V +
Sbjct: 241 DTEKPETLLVFSRTKHGANKIVKVLDKAGIQAAAIHGNKSQAARQKALNAFKEGKLHVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +LELVI  +L + PE  +HR GRTGRA   G+++     + +   + +
Sbjct: 301 ATDIAARGIDVSELELVIQYDLPNVPETYVHRIGRTGRAKASGIAISFCATDERAYLKDI 360

Query: 360 FREANVSV-VWEPAPSVEA 377
            +     + V E  P +  
Sbjct: 361 EKLIKQKIHVIEEHPFLSD 379


>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
 gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           infantis SK1302]
          Length = 525

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 230/451 (50%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      S E   +   Q   + ++     + I+ + +K       L ++  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 186/372 (50%), Gaps = 5/372 (1%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M    F ++P    +  +L E GY   T +Q A +   L   D+L  AQTG+GKT AF L
Sbjct: 1   MTTTKFTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L     +  P  +P  L + PTRELA+Q+   +E       +  AV  GGV  + 
Sbjct: 61  PILQNLSKHTRKIEP-KSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R LQ G  I++ TPGRL D    K L +  ++  VLDEAD MLD+GF  DI+ IL   
Sbjct: 120 QVRALQGGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLL 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR  L FSAT+   I TLA     +  +V +   +     ++ R + V    + + ++
Sbjct: 180 PQKRHNLFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDLLL 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+       +VF   +   +R    L +       + G+ SQ +R  AL+  ++G  R
Sbjct: 240 HILKDESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVR 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+  +  VI+ EL   PE+ +HR GRT RAG  G+S+       +   
Sbjct: 300 VLVATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEERSFL 359

Query: 357 ERLFREANVSVV 368
             + +     V 
Sbjct: 360 FAIEKTTRTKVT 371


>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           112]
          Length = 400

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 5/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +    ++  E   +++  R R   R
Sbjct: 372 IEKLIKRTLSLETL-ALDLPRHRHDDR 397


>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           B7210]
          Length = 399

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 5/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +    ++  E   +++  R R   R
Sbjct: 372 IEKLIKRTLSLETL-ALDLPRHRHDDR 397


>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 453

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/453 (30%), Positives = 218/453 (48%), Gaps = 13/453 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+SE+GY + + +Q   +   L  KDV+ +AQTG+GKT AF L +   L    
Sbjct: 8   LSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILERL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA QVG  +    +K  +   V  GGV ++ +   L+ G  
Sbjct: 66  GDRARSNQARALILTPTRELAAQVGECVSIYSSKLPLRSTVVFGGVKINPQMMRLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ LMFS
Sbjct: 126 VIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDILPKRRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     +      V    +   +  ++R +    
Sbjct: 186 ATFSNDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   +R T+ L        A+ G+ SQ  R+ AL   + G  ++ +ATD+AAR
Sbjct: 246 ALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    E+ +HR GRTGRAG +G +V ++  +  +    + R     
Sbjct: 306 GIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLADIERLIQKR 365

Query: 367 VVWEPAPSVEAIRERDAQRI------LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +  E     E  +     R+       + P    + +  E++  D    K  P +  A  
Sbjct: 366 LPREEIEGFEPEQRLPESRLPTQPVKARKPKKPKAAKSGEQREQDRKGEKKGPRQDGAA- 424

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
               R    AP         +GR   R ++++ 
Sbjct: 425 ----RNNANAPRRQRRRGTGAGRPAPRKEAKSN 453


>gi|320186650|gb|EFW61374.1| Cold-shock DEAD-box protein A [Shigella flexneri CDC 796-83]
          Length = 400

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 146/339 (43%), Gaps = 27/339 (7%)

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++ A+V  L       AI+F  T+ +     + L  + +   AL+G+++Q  R   L+
Sbjct: 1   MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLE 60

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ +HR GRTGRAGR G ++  +
Sbjct: 61  RLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFV 120

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDE----K 401
               +R    + R   +++     P+ E + +R  ++    +Q  L    +        K
Sbjct: 121 ENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSK 180

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD------------- 448
                   + D E +AA  L++ +        + P + +  +  FRD             
Sbjct: 181 IQPTAEGEELDLETLAAALLKMAQGERTL--IVPPDAPMRPKREFRDRDDRGPRDRNDRG 238

Query: 449 -DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
                       R +      + + VG     E R ++  +     I+ + IG I++   
Sbjct: 239 PRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS 298

Query: 508 LTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
            + +E+      + +    RT  L+K + ++ LG  +P 
Sbjct: 299 HSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH 337


>gi|75906865|ref|YP_321161.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75700590|gb|ABA20266.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 513

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 221/477 (46%), Gaps = 22/477 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q   E L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L  + 
Sbjct: 10  ISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLPILERLDPQQ 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A+ + PTRELA+QV   +      +G+      GG S+ R+   L+ G H
Sbjct: 70  ------KAVQAIVLTPTRELAIQVHDAMAQFIGNSGLRTLAIYGGQSIDRQMLQLKRGVH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L +  +K  VLDEADEML +GF DD+E IL  +P++R+  +FS
Sbjct: 124 IVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQERQTALFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+ P+I  L   + +  V V +       + I+  A L+     +  A+  IL     +
Sbjct: 184 ATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEMEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  TR + +  T  L      V    G+LSQQ R   L   R  + R  +ATD+AA
Sbjct: 244 TALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    
Sbjct: 304 RGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERHVRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--------------PLFLDSIQGDEKKMVDVLLAKH 411
           +      P+   I  R   ++ +               P+  + I+  + + +     + 
Sbjct: 364 NWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAALQI 423

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
             ++    +L    A +      TP   + G+ R     R       S +N      
Sbjct: 424 AYDQTRPAWLS-TDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDER 479


>gi|33598065|ref|NP_885708.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 477

 Score =  214 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 133/459 (28%), Positives = 222/459 (48%), Gaps = 15/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +  ++ +++++ GY N T +Q   +   +  +DV+ +AQTG+GKT AF L +  
Sbjct: 18  TFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQK 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  L ++Y    V + +A+ N     +   A  +    +  A+V++
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G K  IVF +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V 
Sbjct: 258 VKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R    
Sbjct: 318 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLD 377

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     V          +  R   R    P          ++  D    +       A
Sbjct: 378 IEKLIKRQVPRGKLELPADLVARSHGRDRDAP---------RERGADRHRGER--RTSGA 426

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
              R     L            +  +  + + R+     
Sbjct: 427 AAPRQPVDELFYKPYEPANGQPASPETPKQEGRSNAPKR 465


>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase-like [Burkholderia sp. 383]
 gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
          Length = 527

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 215/387 (55%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  +++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 154 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 214 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 274 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEAL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 334 VATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 393

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +     +  R R  +R
Sbjct: 394 IEKLIKRPLEMQTLALDKPARHRHDER 420


>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 529

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 147/512 (28%), Positives = 229/512 (44%), Gaps = 44/512 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  LSLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  R+ +A +     +I    V+   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPERIEVARQATTSENITQGVVMFKASRKDREATEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                ++         NAI+FC+ +  V    K L +H +    + G+L Q +R+  L  
Sbjct: 238 RKLLRMLIDAEGEKCTNAIIFCNRKMDVDTVAKSLKKHGYDAAPIHGDLDQSQRTKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRNGELRFLIASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEP------APSVEAIRERDAQRILQDPLFLDS---IQGDE 400
              ++  E + R     +          AP+ E        +    P F D     +   
Sbjct: 358 PRDEKNFEDVERLVQKEIPRLENLLQTDAPAPEEATAEAPAKADDKPKFADKPKRTRSRS 417

Query: 401 KKMVDVLLAKHDPEKIAA---GFLRIHRAGLCAPE-----------EITPVSLVSGRDRF 446
           +K       K   E++ A         +A    P+           E+ P      +D  
Sbjct: 418 RKSDAPRADKAAAEQVTADKPAEDNQPQAPKVEPKAEPTSEPAPQAEVAPAQDAPAQDAP 477

Query: 447 RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             + R    GG +    +G        G   K
Sbjct: 478 SQNDRRSNRGGNNDKTPRGR-------GRNDK 502


>gi|162447374|ref|YP_001620506.1| ATP-dependent RNA helicase, DEAD box containing [Acholeplasma
           laidlawii PG-8A]
 gi|161985481|gb|ABX81130.1| ATP-dependent RNA helicase, superfamily II [Acholeplasma laidlawii
           PG-8A]
          Length = 448

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 129/409 (31%), Positives = 219/409 (53%), Gaps = 5/409 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI + I +AL+  GY   T++QE  +   L  +D+L SAQTG+GKT AF + + 
Sbjct: 1   MKFSELNIIERIQKALTLSGYEAPTAIQEQAIPILLSGQDLLGSAQTGTGKTAAFAIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    +  +P     AL + PTRELA+Q+   ++       ++     GGVS  R+  
Sbjct: 61  QKIYETKEHKAPRK-VQALILTPTRELALQIHENVKIYAKYLNIISTTIYGGVSQKRQEE 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +V+ TPGRL D +  K +++  ++ +VLDEAD+MLD+GF  D+  I+D +PKK
Sbjct: 120 ALKRGVDVVIATPGRLLDLMNQKIISLQDVRYLVLDEADQMLDMGFIKDVTSIVDKTPKK 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  L+K    +  R+ +    +    I     +V  +++   +++++
Sbjct: 180 RQTMLFSATMPKQIEVLSKQILVNPERIAVTPVTQTLDAITQSVYMVNKANKTLLLIDLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K+ +VF  T+   ++  K L     +   + G  SQ  R  AL   + G+ ++ +
Sbjct: 240 YTLNMKSVLVFTKTKHGANKLVKNLMNLGIESEPIHGSKSQAARERALANFKKGKTKILV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L+ VI+ EL   PE  +HR GRTGRAG  GM++ ++  + Q+   ++
Sbjct: 300 ATDIAARGIDIEALDYVINFELPEVPETYIHRIGRTGRAGLSGMALSLVDPSEQKLLTQV 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR-ILQDPLFLDSIQGDEKKMVDVL 407
            +  N  +          I+ +  QR ++ D L  D+ +  EK   ++ 
Sbjct: 360 EKHINSKIEAVGHKY--QIQSQPKQREVITDKLKTDTSKKQEKPKKELP 406


>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
           2-40]
 gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 516

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 195/379 (51%), Gaps = 3/379 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   I +A+ E+GY   T +Q   + P L  +DV+ +AQTG+GKT  F L + 
Sbjct: 18  MKFAELGLCPAIQKAVLEQGYETPTPIQAQAIPPVLEGRDVMAAAQTGTGKTAGFTLPIL 77

Query: 60  STLL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L    EN R    +   AL + PTRELA QVG  +        +   +  GGV ++ +
Sbjct: 78  EILAEGIENGRKVKPNQARALVLTPTRELAAQVGENVALYGKYLPIKSTIVFGGVKINPQ 137

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D    + +    L+ +VLDEAD MLD+GF  DI  I+   P
Sbjct: 138 MMKLRGGVDILVATPGRLMDLYNQRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAILP 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ LMFSAT S  I  LAK+   + V + +   N   + +      V   ++   + +
Sbjct: 198 KKRQNLMFSATFSQDIRELAKSIVNNPVEITVNPPNSTATRVKQWICPVDKKEKPALLTH 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ +  +  +VF  T+   ++  K L     +  A+ G  SQ  R+ AL   ++G  ++
Sbjct: 258 LIKTNKWQQVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTKALAEFKNGTVKI 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  L  V++ +L    E+ +HR GRTGRAG +G +V ++  +  +  +
Sbjct: 318 LVATDIAARGLDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLK 377

Query: 358 RLFREANVSVVWEPAPSVE 376
            + R     +  E     E
Sbjct: 378 EIERLTKTLLTREVIQGFE 396


>gi|94311518|ref|YP_584728.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 556

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 136/392 (34%), Positives = 207/392 (52%), Gaps = 9/392 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE+  +   I  AL+E+GY   T +Q   +   L  KDV+ +AQTG+GKT  F L + 
Sbjct: 73  QTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPII 132

Query: 60  STLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL   N   SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ +
Sbjct: 133 QRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQ 192

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  P
Sbjct: 193 TDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLP 252

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT SP I  LA +Y K  V + +A  N  + ++      V    +  A+V+
Sbjct: 253 AQRQTLLFSATFSPEIKKLASSYLKQPVTIEVARSNSTNENVRQVVYQVQDGHKQAAVVH 312

Query: 238 ----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                     ++  IVF +++   SR  + L        A+ G+ +Q ER   L   ++G
Sbjct: 313 LLKQRANEQQSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLDGFKNG 372

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNM 352
                +ATDVAARG+D+P +  VI+ +L  + E+ +HR GRTGRAG  G ++   +P N 
Sbjct: 373 TIDALVATDVAARGLDIPAMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGND 432

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
            R    + +    S+        +   ER  Q
Sbjct: 433 DRLLADIEKLIKRSIPRGSLDGFDPTGERARQ 464


>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
 gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
           700641]
          Length = 524

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 229/451 (50%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEDIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      S E   +   Q   + ++     + I+ + +K       L ++  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E +A   L +    +  P+ +  V +   + 
Sbjct: 415 EDLAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|71736442|ref|YP_272752.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298485028|ref|ZP_07003125.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71556995|gb|AAZ36206.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160438|gb|EFI01462.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 625

 Score =  214 bits (543), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDE 478


>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 501

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 217/485 (44%), Gaps = 14/485 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 ALIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---------LS 229
            R+ L FSAT++P I  +   +     R+ +A +     +I    VL             
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSENITQGVVLFKASRRDREGSEK 237

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +    +         NAI+FC+ +  V    K L ++ +    + G+L Q +R   L  
Sbjct: 238 RKLLRHLIDQEGEKCTNAIIFCNRKTDVDICAKSLKKYGYNAAPIHGDLDQSQRMKTLDE 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FREGNLRFLVASDVAARGLDVPTVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGTAMMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++  E + R     +     P  +A  +  A+   +     ++  G+  +       
Sbjct: 358 PKDEKNLEDIERLVQQEIPRIENPFKKAKADPKAKADAKAQDTAEAKDGETTERKTRSRR 417

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
               +  A        A +   +   P      +   R             +  +G++  
Sbjct: 418 SSRSKDAAKEETTAVEANVVEAKAAEPAKTEEPKAANRGKPDQKGNQKSKNNRGRGNNND 477

Query: 470 SLSVG 474
            + VG
Sbjct: 478 RVVVG 482


>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
 gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
          Length = 502

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 225/484 (46%), Gaps = 20/484 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            ++L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITSLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  R+ +A +      I+  AV    S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAIVFC+ +  V    K L ++ +    + G+L Q +R+  L+ 
Sbjct: 238 RTVLRQLIDREGEKCTNAIVFCNRKVDVDIVAKSLKKYGYNAEPIHGDLDQSQRTRTLEG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R+ IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +  ++ 
Sbjct: 298 FREGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDA----QRILQDPLFL--DSIQGDEKKM 403
              ++  E + +     +     P V+A  + +A    ++    P      S + D+   
Sbjct: 358 PRDEKNFEDVEKLLQKEIPRVELPGVKAPAKAEATADEEKTDAKPKRTRSRSRKSDKSDK 417

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           V+        E  A              +E    +  SG D+ R D      G G     
Sbjct: 418 VNAPAEATAAEAPATEAPVEAPEESKDTKESKAPAQKSGADKPRSDRGRSDKGRGRGSKS 477

Query: 464 KGSS 467
             + 
Sbjct: 478 DNNV 481


>gi|302134631|ref|ZP_07260621.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 629

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 216/477 (45%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            +P   AA      R      E+           R    S   +    + D F+   
Sbjct: 428 DNP---AAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDDE 481


>gi|320322003|gb|EFW78099.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 625

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLASKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDE 478


>gi|312129179|ref|YP_003996519.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905725|gb|ADQ16166.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 373

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 188/367 (51%), Gaps = 5/367 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+     + +AL E GY +LT +QE  +   L+ +D+L  AQTG+GKT AF + +   
Sbjct: 3   FENLNLSAPLAQALQEYGYTSLTPIQEQAIPKVLQGQDLLGCAQTGTGKTAAFAIPILER 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L              L + PTRELA+Q+G   +       +  AV  GGV+ +++   L
Sbjct: 63  ILQNPKN---KRQIRVLILTPTRELAIQIGDNFKAYSKHIKISHAVIFGGVNQNKQVNQL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D +    + ++ L  +VLDEAD MLD+GF  D++ IL   P +R+
Sbjct: 120 KQGVEILIATPGRLLDLMSQGFVRLNGLDTLVLDEADRMLDMGFVHDVKKILTKIPTERQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+  +I   A +   +   V +   +     +      V   ++   ++NIL+ 
Sbjct: 180 TLFFSATMPQSIRKFAASILTNPAYVEVTPVSSTAETVKQGVYFVDKKEKTPLLINILKD 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+    +  K L +      A+ G  SQ  R  AL+  +  R  V IAT
Sbjct: 240 QSTDRTLIFTRTKHGADKLVKQLGKVGIPAAAIHGNKSQNARQRALEDFKSSRLNVLIAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ +L  VI+ EL + PE  +HR GRTGRAG +G++V    Q      + + +
Sbjct: 300 DIAARGIDIEELPYVINYELPNVPETYVHRIGRTGRAGAEGVAVSFCDQEELNDFKNIQK 359

Query: 362 EANVSVV 368
              + + 
Sbjct: 360 LTGIRIE 366


>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. BTAi1]
          Length = 469

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 189/373 (50%), Gaps = 4/373 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   +  AL E  Y   T +Q   +   L+ +DV+  AQTG+GKT +F L +
Sbjct: 1   MTSFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P +A   L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 61  LHRLLENRIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLTSALAIGGVPMGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 120 RALMPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPI 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA    +D  RV +   +     I  R + V  S + + +  +
Sbjct: 180 KRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERITQRVIQVDHSAKPSLLAQL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  
Sbjct: 240 LKDEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAE 357
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G+++ ++   +      
Sbjct: 300 VATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADELSYLR 359

Query: 358 RLFREANVSVVWE 370
            + R    ++  E
Sbjct: 360 DIERLTKTTLPRE 372


>gi|296157319|ref|ZP_06840155.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295892655|gb|EFG72437.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 520

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 148/556 (26%), Positives = 233/556 (41%), Gaps = 45/556 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 8   LSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSSP 67

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 68  AVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 128 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I TLA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 188 FSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTHLIKQHNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 248 FQVLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +   
Sbjct: 308 ARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             V  E     E       + IL+         G   +       + D  +  AG  +  
Sbjct: 368 RPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKRDDARRGGAGSAKPA 427

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
           +     P          G     +D +  +                   G +     R  
Sbjct: 428 QRSGQRPANGQQQPKPQGAKPAGNDGQPRRD------------------GQRHDDRPR-- 467

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
              +                         +A       +  K   G     LGG KP   
Sbjct: 468 --AVAHEGS--------------------AAQHAPRKPQAAKPQGGNPGALLGGTKPRND 505

Query: 545 GYKSSGFKSKNSQDGA 560
             +  G  +++ Q G 
Sbjct: 506 APR-GGQPTRSGQRGR 520


>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 484

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 134/473 (28%), Positives = 222/473 (46%), Gaps = 12/473 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + + +A++  GY + T +Q   +   L  +D+L  AQTG+GKT AF L + 
Sbjct: 1   MTFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L     R   A  P  L + PTRELA QV            + VA+ IGGVS   +  
Sbjct: 61  SRLEQGRAR---ARMPRTLILEPTRELAAQVEESFARYGINHKLNVALLIGGVSFAEQEN 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  GA +++ TPGRL D      L ++ ++ +V+DEAD MLD+GF  DIE I    P  
Sbjct: 118 KIMRGADVLIATPGRLLDFSERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFT 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVN 237
           R+ L FSAT+ P IT L + +  + VR+ +A  +   + I     A     + R+     
Sbjct: 178 RQTLFFSATMPPEITRLTETFLHNPVRIEVARASSTATTITQGLVASAHGPAKRETLRQL 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I      KNAI+FC+ +  V+   K L +H F   AL G++ Q+ R  +L   + G   +
Sbjct: 238 IRGAENLKNAIIFCNRKRDVAVLHKSLQKHGFSAGALHGDMDQRARMTSLDAFKSGDVNL 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + +DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G+++ ++    ++  +
Sbjct: 298 LVCSDVAARGLDIPDVSHVFNFDVPTHAEDYVHRIGRTGRAGRSGVALSIVTSADRKYVD 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +     + W+   +++ +    A+  +         +G +         +  P + A
Sbjct: 358 EIEKLIARKIDWQGGATLDDVA---AEESVAHATETRRGRGGKIAKRPAPQEEARPSQAA 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           A   R  ++     E  +     S   R R       V      +        
Sbjct: 415 A---RGPKSRRPVEEGRSDGRKPSNPPRSRRSYEDDDVPVVGLGDHVPMFLLR 464


>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 471

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 203/370 (54%), Gaps = 3/370 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   + I +A++E GY   T +Q   +   L   D+L  AQTG+GKT AF L +
Sbjct: 5   IETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L++   + +P   P +L + PTRELA+QV          T +  AV  GGV  + + 
Sbjct: 65  IHNLISTRAKPNPKQ-PRSLVLVPTRELAIQVHESFVLYGKYTQIRTAVIFGGVGQNPQA 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + + +G  +++ TPGRL D +    +++ +L+  VLDEAD MLD+GF  DI  I+   PK
Sbjct: 124 KAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRMLDMGFIHDIRKIISYLPK 183

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+ P I  LA +   + +R+++   +     I    +   L+D+ N ++++
Sbjct: 184 RRQNLFFSATMPPEIEKLANSILVEPIRIDVTPVSSTVELISQSVMYTELADKKNLLLHL 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +    K  I+F  T+   ++ +++L +   +   + G  SQ  R  AL+  R G+ R  
Sbjct: 244 FKDKNFKKTIIFTKTKHGANKISELLNKSGIKTDVIHGNKSQSARQRALEDFRSGKNRAL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+  VI+ E+   PE  +HR GRT RAG+ G+++ +   + +   + 
Sbjct: 304 VATDLAARGIDIDDITHVINYEIPYVPETYVHRIGRTARAGKNGIAIAIAEADERSLIKD 363

Query: 359 LFREANVSVV 368
           + +   +S+ 
Sbjct: 364 IEKVIGISIP 373


>gi|330967974|gb|EGH68234.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 629

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 144/586 (24%), Positives = 240/586 (40%), Gaps = 58/586 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
               +            V    P V     +R+    R    P   D  + +  +     
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRKSRGAR----PARADGDKNNGGRRDKGK 423

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               D    AA                 P          R + RA +     + + +   
Sbjct: 424 DKGKDKPAAAAA--------TGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPD 475

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
            F        + +                 + G         +V           R    
Sbjct: 476 EF-----RDDEVD-----------------NFGN-----RADYVSPYQGKGQNRGRRPAA 508

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             G      G  +P   G  + G     S  GA KR      A ++
Sbjct: 509 APGAAPVAGGAARPANPGRPAGGAPRTGSGTGAPKRNGSGSSAPRS 554


>gi|237798154|ref|ZP_04586615.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021006|gb|EGI01063.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 629

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 214/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIPDGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    +        + D F+   
Sbjct: 428 EKP---AAAAATGERPARQPREKKPREGTPRSEQRASQPATPRPASDRAPDEFRDDE 481


>gi|317477122|ref|ZP_07936363.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906665|gb|EFV28378.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 392

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 199/367 (54%), Gaps = 3/367 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GYVN T +Q   +   L  KD+L  AQTG+GKT AF + +   L A+
Sbjct: 27  NITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQQLQAD 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      +  AL + PTRELA+Q+   ++     T V   V  GGV+   +   L  G 
Sbjct: 87  RN---LNKSIKALILTPTRELALQISECIDDYARYTQVCHGVIFGGVNQRTQVNMLHKGV 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    + +++++  VLDEAD MLD+GF  DI+ +L   PK+++ L+F
Sbjct: 144 DILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQTLLF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +L  +  K  V+++I  ++     I+     V   ++   +++IL     +
Sbjct: 204 SATMPDTIISLTNSLLKQPVKISITPKSSTVDAIEQTVYFVEKKEKSKLLISILHKTQGQ 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+ +  R  +VL +      A+ G  SQ  R +AL+  + G+ RV IATD+AA
Sbjct: 264 SVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQNARQSALENFKSGKIRVMIATDIAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    + +    
Sbjct: 324 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNSGTALSFCSQEERKLVNDIQKLTGK 383

Query: 366 SVVWEPA 372
            +     
Sbjct: 384 KLSRAEL 390


>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
          Length = 414

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
 gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 478

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           91]
          Length = 411

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           DM98]
          Length = 409

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 486

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|76808776|ref|YP_332762.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
 gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           1710b]
          Length = 559

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 89  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 148

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 149 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 208

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 209 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 268

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 269 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 328

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 329 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 388

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 389 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 448

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 449 IEKLIKRTLSLETL 462


>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
 gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
          Length = 481

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|53718749|ref|YP_107735.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
 gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           K96243]
 gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 482

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|33594279|ref|NP_881923.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 477

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 133/459 (28%), Positives = 220/459 (47%), Gaps = 15/459 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +  ++ + +++ GY N T +Q   +   +  +DV+ +AQTG+GKT AF L +  
Sbjct: 18  TFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++
Sbjct: 78  RLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQK 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P 
Sbjct: 138 EALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  L ++Y    V + +A+ N     +   A  +    +  A+V++
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G K  IVF +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V 
Sbjct: 258 VKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R    
Sbjct: 318 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLD 377

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     V          +  R   R    P          ++  D    +       A
Sbjct: 378 IEKLIKRQVPRGKLELPADLVARSHGRDRDAP---------RERGADRHRGERCTS--GA 426

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
              R     L            +  +    + R+     
Sbjct: 427 AAPRQPVDELFYKPYEPANGQPASPETPEQEGRSNAPKR 465


>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 150/464 (32%), Positives = 228/464 (49%), Gaps = 27/464 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+ +  A++E GY   T +Q+  +   L  +DV+  AQTG+GKT  F L L   L    
Sbjct: 9   IPE-LLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQRLARHA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL +APTRELA+QV   ++       +      GGV +  + +DL+NG
Sbjct: 68  STSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQDLRNG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K + +  ++ +VLDEAD MLD+GF  DI  ILD  P  R+ L+
Sbjct: 128 IEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLPAARQSLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA    K+   + +A  N     I +R   V+   + N + ++LR+   
Sbjct: 188 FSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHLLRHEPD 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF +T+ + SR    L  H     A+ G+  Q +R++ L+  + G+ RV +ATDVA
Sbjct: 248 TQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ EL    E+ +HR GRTGRAGR+G +V ++    +     + +   
Sbjct: 308 ARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERHHLAEIEKLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           + +  E  P  +            +P F ++  G   +      A   PE          
Sbjct: 368 LQIPQEIVPGFDP-----------EPDFFET--GSRSRHGRRTAAASAPE---------- 404

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  ++ TP S  +          A +  G S     G  +
Sbjct: 405 -PAKETGQKTTPASRPARPASAARSGEARRRPGRSTIAADGFDY 447


>gi|330501389|ref|YP_004378258.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328915675|gb|AEB56506.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 632

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 191/366 (52%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTAGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + ++      P  L + PTRELA QV    +        V A   GGV ++ + + L 
Sbjct: 68  HPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQVQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P +R+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLARLPAQRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +A S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKASKVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIP 373


>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 605

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 188/368 (51%), Gaps = 3/368 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +     PA    AL + PTRELA QV   L        V   V  GGV ++ +   
Sbjct: 62  RL-TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   P+ +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA    K+   + +   N     I      V    +   +++I++
Sbjct: 181 QSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQ 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +A
Sbjct: 241 EHNWSQVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++  + +     + 
Sbjct: 301 TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEIE 360

Query: 361 REANVSVV 368
           R     + 
Sbjct: 361 RFTKQEIP 368


>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
 gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
           700779]
          Length = 524

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 141/451 (31%), Positives = 230/451 (50%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFNLSADLLAEVEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLHDIETLILDEADEMLNMGFLEDIEAIISRVPEN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      S E   +   Q   + ++     + I+ + +K       L ++  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKKIERDFANEEIRSNFEKFGKDARQLASEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|77461504|ref|YP_351011.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385507|gb|ABA77020.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 622

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/577 (25%), Positives = 250/577 (43%), Gaps = 32/577 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+ + GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEAIRERDAQRI-LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +         A ++EA +    +R  +++P      +GD          + D  K 
Sbjct: 368 TKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNARGPRGDGPNGGGGGGGRKDKGKD 427

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                     G     +  P      R++ +           + D F        + G++
Sbjct: 428 KGKEKPAGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDDI--DNFGNR 485

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ--LK 534
                +        + G NR+  GA             A G           +G Q   +
Sbjct: 486 VDYVPKQ-----APTGGRNRRP-GA------------PAQGAGSGAPRGGQSQGRQNGPR 527

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
              G        K SG ++   +DG  +R +  +   
Sbjct: 528 NSNGSSTGTPPGKRSGPRNGAPRDGQGRRDENSRNRR 564


>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 472

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I +LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSV--EAIRERDAQR 385
            R     +       +EP PS   E I++R  Q+
Sbjct: 362 ERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQ 395


>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 479

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I +LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSV--EAIRERDAQR 385
            R     +       +EP PS   E I++R  Q+
Sbjct: 362 ERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQ 395


>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 480

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I +LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSV--EAIRERDAQR 385
            R     +       +EP PS   E I++R  Q+
Sbjct: 362 ERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQ 395


>gi|170754379|ref|YP_001780277.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
 gi|169119591|gb|ACA43427.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 202/387 (52%), Gaps = 4/387 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN+   + I +AL E GY   T +QE  +   L   D++  AQTG+GKT AF + +  
Sbjct: 2   LFENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGIDLVGCAQTGTGKTAAFAVPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA+Q+G   E       +  AV  GGVS + + + 
Sbjct: 62  NLSKGKKVNKNPRPIRALVLAPTRELAIQIGDSFECYGKYINLKSAVIFGGVSQNPQTKA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGR+ D    K +++ +++  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRMLDMGMIHDVKKIISKLPKVR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   IT L  +  KD +RV +   +     I      V    +   + ++L+
Sbjct: 182 QNLLFSATMPSEITKLVDSIVKDPIRVEVTPASSTVDTITQEVYHVRKKQKRALLKHLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A+VF +T+   +   K L E   +  A+ G  SQ  R  AL   ++G+ RV +A
Sbjct: 242 DKSIESALVFSTTKRGANMIAKDLVEAGIEAEAIHGNKSQNARQRALNNFKEGKIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V +  L   PE  +HR GRTGRAG KG+++        +  + + 
Sbjct: 302 TDIAARGIDVNELSHVFNYNLPDVPETYVHRIGRTGRAGAKGVAISFCDIEETKSLKAIE 361

Query: 361 REANVSV-VWEPAP-SVEAIRERDAQR 385
           +  N  + V E  P  +  I E + ++
Sbjct: 362 KLINKEIPVVEEHPYKIRHINEDEVKK 388


>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 410

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 200/377 (53%), Gaps = 4/377 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+   I +AL +  Y   T +Q+  + P L  +D+L  AQTG+GKT AF +   
Sbjct: 1   MQFKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +    +      AL I PTRELA+Q+            +  AV  GGVS   +  
Sbjct: 61  QLLHKDGAPRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEA 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G  I+V TPGRL D ++ K +++ +++ ++LDEAD MLD+GF  D++ I+  +P +
Sbjct: 121 ALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQ 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +A +  ++ V+V I   +     I      V   ++ + ++++L
Sbjct: 181 RQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++AIVF  T+    R  + L +      A+ G+ SQ  R  ALQ  ++   RV +
Sbjct: 241 KDPSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  VI+ EL + PE  +HR GRTGRAG+ G+++     + +     +
Sbjct: 301 ATDIAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYLADI 360

Query: 360 FREANVSVV---WEPAP 373
            +     +      P P
Sbjct: 361 EKLIGKRIPVIKEHPYP 377


>gi|109898646|ref|YP_661901.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700927|gb|ABG40847.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 426

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 187/368 (50%), Gaps = 1/368 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +A+   GY  +T +Q+  +    R +DVL SAQTG+GKT AF + +   +L +
Sbjct: 7   DLAPELQQAIDACGYKKMTPIQQQAIVVARRGRDVLASAQTGTGKTAAFAVPILQQMLNK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +P + P AL + PTRELA Q+   +      T + V    GGV +  +   L  G 
Sbjct: 67  PKKTTPGT-PRALILTPTRELAEQLATNIANYAKFTDISVTALYGGVKLGGQASKLSAGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL +H+  K + +++++ VVLDEAD MLD+GF  D+  +L       + L+F
Sbjct: 126 DIVISTPGRLLEHMTLKNVELANVEFVVLDEADRMLDMGFIADVRQMLAQITSAHQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATISP +  LA    K+   +     N     + +    V+  D+      +L      
Sbjct: 186 SATISPTVNELAHKLLKNHQEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLAEQNWY 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST+    +    L            + SQ  R  A+   +  + +V IAT+VAA
Sbjct: 246 QVLVFTSTKEQADKLMAALKTSKIDAAVCHADKSQGARRRAIADFKSAKLQVLIATEVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V++  L   PE+ +HR GRTGRAG++G ++  + +  +R  ER+ R  N 
Sbjct: 306 RGLDIQGLDYVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIERLING 365

Query: 366 SVVWEPAP 373
            +     P
Sbjct: 366 KIKRISRP 373


>gi|281490897|ref|YP_003352877.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374655|gb|ADA64175.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 547

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 147/451 (32%), Positives = 225/451 (49%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + I   L+E GY   T +QE  +   L  +DVL  AQTG+GKT AFGL   
Sbjct: 1   MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A N       A  AL IAPTRELAVQ   EL       G+ V    GG S+ ++ +
Sbjct: 61  EKIDASNP------AIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGRL D I+ K + +  L+ ++LDEADEML++GF +DI FI++ +P+ 
Sbjct: 115 GLKAGAHIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEA 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   + IA++      ID   V     ++ + +  +L
Sbjct: 175 RQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V    + L    ++   + G+L Q +R   L+  + G   V +
Sbjct: 235 DVERPELAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ + E+ +HR GRTGRAG+ G SV  +  N       +
Sbjct: 295 ATDVAARGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE------KKMVDVLLAKHDP 413
                  +     P+ E   +      + D L   S    +       K    LL K D 
Sbjct: 355 ENMTKKPMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDA 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           +++ A  L   +  +  P+    V + + R 
Sbjct: 415 KELVALLL---QGRVKDPDNQEEVKITAERP 442


>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 214/387 (55%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 34  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL   +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 94  RLLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQM 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 274 LRGRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEIEAL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 334 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 393

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +     +  R R  +R
Sbjct: 394 IEKLIKRPLEVQTLALDKPARHRHDER 420


>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 521

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 215/387 (55%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 35  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 95  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 154

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 155 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 214

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 215 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 275 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEAL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 335 VATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 394

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +     +  R+R  +R
Sbjct: 395 IEKLIKRPLDVQTLTIDKPARQRHDER 421


>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
 gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 520

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 215/387 (55%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 34  TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 214 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 274 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEAL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 334 VATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 393

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +     +  R+R  +R
Sbjct: 394 IEKLIKRPLDVQTLTIDKPARQRHDER 420


>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 487

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 214/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 252 LRSRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +     +  R R 
Sbjct: 372 IEKLIKRPLEVQTLAIDKPARHRH 395


>gi|302063416|ref|ZP_07254957.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
          Length = 629

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 215/477 (45%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    S   +    + D F+   
Sbjct: 428 EKP---AAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDDE 481


>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 521

 Score =  213 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 225/474 (47%), Gaps = 17/474 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   +  A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +
Sbjct: 1   MK-FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N +        AL I+PTRELA+Q   EL  L +   V   V  GG  + R+ 
Sbjct: 60  LEEVDPKNPQI------QALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    I+VGTPGRL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P 
Sbjct: 114 HALKEHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  +   + +D   V+IAS+      +D   V     ++ +A+  +
Sbjct: 174 DRQTLLFSATMPDDIKKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AIVF  T+  V   TK L    ++   + G+L Q  R   L+  + G  +  
Sbjct: 234 FDVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G+SV  + +        
Sbjct: 294 VATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRA 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLF------LDSIQGDEKKMVDVLLAKHD 412
           + +  N  +     PS E       +    +         +D+++ +  ++ +   AK  
Sbjct: 354 IEKLINKRMAALKPPSAEEAHIARLKNAKAETYAVLGKTTIDNVEDEATEIANQYDAKLI 413

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              +     +        P +I     +  R    D    F+ G  + +  +  
Sbjct: 414 AAALLHALSK--DDERTRPVDIAQEKPLPRRHSSSDHGHNFRSGRSNGNRGRNG 465


>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
 gi|156110962|gb|EDO12707.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
 gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
 gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  213 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +Q   +   L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N   +      AL + PTRELA+Q+   +      T V   V  GGV+   +  
Sbjct: 61  QHLQM-NKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I +L  +  K+ VR++I  ++     I+     V   ++   +V+IL
Sbjct: 180 KQTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ +VF  T+ +  +  K+L +      A+ G  SQ  R  AL   + G+ RV +
Sbjct: 240 QKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|294892441|ref|XP_002774065.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879269|gb|EER05881.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 674

 Score =  213 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   +P  I + ++  G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 211 IQTFDEACLPDYILKEINRAGFEKPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFMIPA 270

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELA+Q+  E +     + +      GG     + 
Sbjct: 271 VIHINAQ-PYLQKGDGPIVLILAPTRELALQIKAECDRFGRSSRITNTCVYGGTQRGPQA 329

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNG  I + TPGRL D +     N+  +  +V+DEAD MLD+GF   +  I+     
Sbjct: 330 RALQNGVEICIATPGRLIDFLESGTTNLKRVTYLVMDEADRMLDMGFEPQVRKIVSQIRP 389

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LM+SAT    +  LA++   +   +     +        + V V  ++     +  
Sbjct: 390 DRQTLMWSATWPKEVQHLARDICNEEPVLVTVGRSGHACHNIQQYVEVVENNVKPERLLA 449

Query: 239 LRYH--------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L                ++FC T+      T++L    +  +++ G+  Q ER   L   
Sbjct: 450 LMQAASAATGGGWTAKTLIFCDTKRGADDITRLLRRDGWPALSIHGDKKQSERDWVLNQF 509

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR+ + IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G++      
Sbjct: 510 KTGRSAIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGASGVAYSFFSP 569

Query: 351 NMQRRAERL---FREANVSVVW 369
           +  + A +L    REAN SV  
Sbjct: 570 DKGKLARQLVNCLREANQSVPE 591


>gi|291297189|ref|YP_003508587.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus ruber
           DSM 1279]
 gi|290472148|gb|ADD29567.1| DEAD/DEAH box helicase domain protein [Meiothermus ruber DSM 1279]
          Length = 556

 Score =  213 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 162/577 (28%), Positives = 276/577 (47%), Gaps = 54/577 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+  +G+   T +Q A +   L  KDVL  A+TG+GKT+AFG+ +A+ L A  
Sbjct: 8   LRPEVAQAIQAKGFTTATPIQAAAIPLALEGKDVLGQARTGTGKTLAFGIPIANRLDAAR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R     AP AL + PTRELA+QV +ELEWL     +      GG    ++   L+ G  
Sbjct: 68  ER---GRAPRALILTPTRELALQVAKELEWLAPHLTITP--IYGGTGYGKQAEALKRGTD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  D++  + L++S ++  VLDEADEML +GF + +E +L+++P  R+ L+FS
Sbjct: 123 VVVATPGRAIDYLEQRVLDLSRIEIAVLDEADEMLSMGFEEAVEQLLEATPPTRQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+      L++ YQK A+ +N+  +     +    A+   + +R + + ++L  +  + 
Sbjct: 183 ATLPTWARRLSERYQKAAIHINVIKDEAISYEEV--AIQAPIHNRLSVLSDLLFAYAPER 240

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF ST+A  +     L         + G++ Q +R   ++  R G   V +ATDVAAR
Sbjct: 241 TIVFTSTKAECNDLALGLESRAHSAAPIHGDMGQIDRERVMERFRSGAVSVLVATDVAAR 300

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++LV+H  L    E+ LHRSGRTGRAGR G  V +     +R  E L RE   +
Sbjct: 301 GLDIPEVDLVVHYRLPDQNESYLHRSGRTGRAGRSGKVVILYGPREKRELETLERELKRN 360

Query: 367 VVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
                 P+ E +        A+RI + P   ++ +   ++  + L+A+   + +A     
Sbjct: 361 FKRVNPPTPEEVMAAKWAMLARRIAKQP---EADKKLWREQAERLIAEGGVDAVAGMLAL 417

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           I           TP SL++G + +                  GS    +SV         
Sbjct: 418 ILGGA------PTPKSLMTGEENW------------VTVKLAGS---RISVNRA------ 450

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPD-LTFVEVSADGVDLL-------RRTVKLDKGIQLK 534
             + +L  +       IG IR+  D   +V++  + +  L        R  K  +     
Sbjct: 451 --VAVLKSAG---AGEIGRIRLDGDVAAYVDIRPEDLSRLDHTALRDLRLTKASEVPAET 505

Query: 535 YLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
                +           + +  ++G+++R + F+  S
Sbjct: 506 RQSERQGQGFARGQGKRQGQGRREGSSQRERPFESPS 542


>gi|289647882|ref|ZP_06479225.1| ATP-dependent RNA helicase RhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 625

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAAAATGERPARQPREKKPREGTPRSEQRALQPSIPRPAADRAPDEFRDDE 478


>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 568

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 190/370 (51%), Gaps = 4/370 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     + +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       S        AL + PTRELA QV   +        +   V  GGV ++ + 
Sbjct: 62  RLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK
Sbjct: 122 ERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA     D   + +   N     I      V    +   +++I
Sbjct: 182 AKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ H     +VF  T+   +   + L +H  Q +AL G  SQ  R+ AL+  + G+ R  
Sbjct: 242 IQQHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ DL  V++ E+ + PE+ +HR GRTGRAG++G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFMME 361

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 362 IERFTKQEIP 371


>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
 gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
           DEAD-box family [Streptococcus mitis B6]
          Length = 521

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 143/450 (31%), Positives = 226/450 (50%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNKLNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  +  ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      S E   +   Q  L+    ++    DE    +      D  K+AA 
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKQVALKK---IERDFADETIRSNFEKFGKDARKLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELAMYILSLTVQDPDSLPEVEIAREK 441


>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
 gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
          Length = 449

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 191/380 (50%), Gaps = 3/380 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +Q   +   L  +D++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALKSAGYEEPTPIQAQSIPAALANQDIMASAQTGSGKTAAFLLPSLQKIIKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           ++   P   P  L + PTRELA QV +  +              +GG S  ++ + L   
Sbjct: 69  SE--QPGKGPRVLVLTPTRELAQQVEKNAQLYAQNMKWVRTVTLVGGSSFGQQIKALSRP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ + P+ R+ L+
Sbjct: 127 IDIVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAMPESRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + I     Q    +        + ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEVIEIERAEAQGKIEEQLLYCDDRNHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMDVRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G++V            ++ R  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVHKIERYIN 366

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             +       +E  R+R+  
Sbjct: 367 RKLPEIVIEGMEPTRKRNKN 386


>gi|28872183|ref|NP_794802.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971879|ref|ZP_03399980.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301385283|ref|ZP_07233701.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|28855437|gb|AAO58497.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923363|gb|EEB56957.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|331015971|gb|EGH96027.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 629

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 23/479 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI------ 416
               +        + I   +A++    P   +       +      A  D          
Sbjct: 368 TKQKIADGDLMGFD-ITAVEAEK----PEVRERPDVRNSRGARPARADGDKNNGGRRDKG 422

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                   AA      R      E+           R    S   +    + D F+   
Sbjct: 423 KDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDDE 481


>gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           suis GZ1]
          Length = 502

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 137/438 (31%), Positives = 230/438 (52%), Gaps = 17/438 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +   N       
Sbjct: 3   AVEKAGFETPSPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTNNQ------ 56

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A  +L IAPTRELAVQ   EL     + GV V    GG S+ ++ + L++GAHIVVGTPG
Sbjct: 57  AIQSLIIAPTRELAVQSQEELFKFGREKGVKVRSVYGGSSIEKQIKALRSGAHIVVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I+ K L +  ++ ++LDEADEML++GF DDIE I++  P+ R+ L+FSAT+   I
Sbjct: 117 RLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEAIIERVPESRQTLLFSATMPEPI 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + K+   V IA++   + ++D   + V   ++ + +  ++     + +IVF  T
Sbjct: 177 KRIGVKFMKEPEHVKIAAKELTNVNVDQYYLRVKEHEKFDTMTRLMDVDQPELSIVFGRT 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   T+ L    F+   + G+L Q +R   ++  ++ +  V +ATDVAARG+D+  +
Sbjct: 237 KRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDVLVATDVAARGLDISGV 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-------ERLFREANVS 366
             V + ++  +PE+ +HR GRTGRAG+ G S+  +  N            ++  +    +
Sbjct: 297 THVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVSPNEMGYLAIIEDLTKKRMKGLKPA 356

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
              E   + + +  +  +R + D    ++     KK    L A+  PE++A   L +   
Sbjct: 357 TAEEAFEAKKKVALKKIEREMADETIRNNFDK-FKKDAIQLAAEFTPEELA---LYVLTL 412

Query: 427 GLCAPEEITPVSLVSGRD 444
            +  PE +  V +   + 
Sbjct: 413 TVQDPESLPEVEIAREKP 430


>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 148/432 (34%), Positives = 222/432 (51%), Gaps = 3/432 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   I +AL+++GYV+ T +Q   +   L+  DV+ +AQTG+GKT  F L +   L+   
Sbjct: 30  LAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQLLMAHA 89

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV   ++     T +   V  GG+ +  +   L+ G
Sbjct: 90  NSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDMTPQTAALRGG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL DH++ K +N+S  + +V+DEAD MLD+GF  D++ I++  PK+R+ LM
Sbjct: 150 VEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQRQNLM 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA  + KD V + +A  N    ++      V    + +A+  I+R  G 
Sbjct: 210 FSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDAVSFIIRERGL 269

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF +T+   SR  + L     +  A+ G+ SQ ER  AL+  ++G   V +ATDVA
Sbjct: 270 KQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGTIEVLVATDVA 329

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +      R    + +   
Sbjct: 330 ARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLLVDIEKMIK 389

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
              V            R A+R         S + DE         +  P   A+   R  
Sbjct: 390 HKFVPAELIGFTPSSGRTAERSHDRRAHERSPRKDESAPRPSRAPERSPGA-ASNGSRSA 448

Query: 425 RAGLCAPEEITP 436
            A     E+I P
Sbjct: 449 YAAAPRKEKIDP 460


>gi|307293134|ref|ZP_07572980.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306881200|gb|EFN12416.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 460

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 215/461 (46%), Gaps = 11/461 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL+ + Y + T +Q   +   L+ KD+   AQTG+GKT AF L       A N
Sbjct: 8   LAEPILRALAAKKYGSPTPIQAQAIPMLLKGKDLCGIAQTGTGKTAAFALPSLDH-FARN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P      L ++PTRELA Q+ +          + V V  GGV ++R+ R L  G  
Sbjct: 67  PKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRTLGRGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I  +   I   +  VLDEAD+M+D+GF   ++ I    PK+R+ L FS
Sbjct: 127 IVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKERQNLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +  D V+V++A ++     +  +A  V   ++   +   +R      
Sbjct: 187 ATMPGEIEALAAQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIRNEDIDR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+    R  + L     Q VA+ G  SQ +R+ ALQ  R G  ++ +ATD+AAR
Sbjct: 247 ALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ EL + PE  +HR GRT RAG +G+++  +  + +   + + R   V 
Sbjct: 307 GIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGIAISFVADDERPYLKAIERTTKVK 366

Query: 367 VVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           +   P P   VEA+  R+  +        +     + +  D      D +K      +  
Sbjct: 367 LDVVPLPENFVEAV--RNLPKAAPQRKGREQTPEQKVRRADGQRRYQDQQK------QQR 418

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                A       +      R R    +     G+     G
Sbjct: 419 GNAERAHRPDGEAAPAKKNFRRRRGGSSVGAHKGAVQKTGG 459


>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 484

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 213/390 (54%), Gaps = 4/390 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   I +A+ E GY + T +Q   +   L  +DV+ +AQTG+GKT +F L + 
Sbjct: 11  ETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL + N   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +
Sbjct: 71  QRLLPQANTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQ 130

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P
Sbjct: 131 SDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLP 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V 
Sbjct: 191 KERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQ 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G    
Sbjct: 251 LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEA 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++  
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            + +     +  +       +R     R L
Sbjct: 371 DIEKLIKRPLDLQRLTVEAPVRHHHDDRSL 400


>gi|237751153|ref|ZP_04581633.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373598|gb|EEO23989.1| DEAD-box ATP dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 518

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 219/462 (47%), Gaps = 14/462 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + E G+   + +QE  + P L  +DV+  AQTG+GKT AF L +  +L  + 
Sbjct: 27  LKDKVLKGIKEAGFTTPSPIQEKAIPPILERRDVIAQAQTGTGKTAAFALPILHSLKND- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S+  AL I PTRELA+Q+  E+  L            GG SV ++   ++    
Sbjct: 86  ------SSIEALVITPTRELAMQISDEVFKLGKFLKTKTVCVYGGQSVKKQLELIEKKPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH++ + L       VVLDE+DEMLD+GF DDIE I    P   + L+FS
Sbjct: 140 VLIATPGRLLDHLKNERLKNFAPNVVVLDESDEMLDMGFIDDIEEIFQYIPNNAQTLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     D V + I S +  ++DI  R  ++  ++R+ A+  ++       
Sbjct: 200 ATMPARIKQLADKILYDPVHIKIQSSSTTNADIAQRYYIINENERNEALTRLIDTESPSK 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F  T+         L    ++  AL G++ Q+ R +++Q  +   A + +ATDVAAR
Sbjct: 260 SIIFIRTKKEADEVNSYLQNKGYKSTALHGDMDQRMRRDSVQAFKGKEADILVATDVAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++  V +  +  N E+ +HR GRTGRAG KG+++ +      +  +++  E N  
Sbjct: 320 GLDIRNVSHVFNYHIPLNIESYVHRIGRTGRAGSKGVAITLATPLEYKDLKKIQNETNAK 379

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 PSV       +  ++ + L    +  +   + + +  K D  ++    L ++  
Sbjct: 380 FELYEVPSV-------SSDVMINTLLNTKVSDEAINLYESIKDKTDSAQLILRLLSVYLR 432

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                      +L   +    +  +  K  G      K  + 
Sbjct: 433 EHVKIGLTKQEALEVQKQEILESKKEAKTKGSKGTKGKTLAR 474


>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
           14]
          Length = 409

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 209/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQAIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|108763335|ref|YP_634008.1| DEAD-box ATP dependent DNA helicase [Myxococcus xanthus DK 1622]
 gi|5668905|gb|AAD46062.1| DEAD-box protein [Myxococcus xanthus]
 gi|108467215|gb|ABF92400.1| ATP-dependent helicase, DEAD/DEAH-box family [Myxococcus xanthus DK
           1622]
          Length = 808

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 162/615 (26%), Positives = 263/615 (42%), Gaps = 66/615 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL+ERGY N T VQ     P +  KD++V ++TG+GKT AFGL L   + A+
Sbjct: 35  NLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEKIPAD 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R        AL + PTRELA+QV  EL+ L    G+ +A   GG S+ ++   L+ G 
Sbjct: 95  ERRV------RALILCPTRELALQVADELKMLAKHKGLKIAAIYGGASMKQQEDALEEGT 148

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ DHI    L +      VLDEADEML+ GF +++  ILD  PK R++L+F
Sbjct: 149 PIIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLF 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  L   Y  +A  + ++ +      I + R  +     +   ++ +L     
Sbjct: 209 SATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEKEEP 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +NAI+FC+TR   +  T VL  + F    L+G+L Q+ER   +  ++ G     +ATD+A
Sbjct: 269 QNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDIA 328

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  LE VI+  L  +P   LHR GRTGR G KG ++ +           L ++  
Sbjct: 329 ARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEKKYG 388

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           +       P+ E       +R +++       S+      +   L  + D + + A  L+
Sbjct: 389 IKFDKREMPAPEEAMRLWTERHVREIQEAAGGSVFEGFLPLAAQLKPRADADDLIAFLLK 448

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDS-------------------------------- 450
              + L   E+        GR+  ++                                  
Sbjct: 449 YFFSHLR-MEKAAAAMAAEGREPPQERKFESREGGRRERGERKERGERRDRERDDRREKR 507

Query: 451 --------------------RAFKVGGGSR--DNFKGSSWFSLSVGSKQKAEARWLMPML 488
                               R  + G G+   +   G +   +++G+        +   L
Sbjct: 508 GESSERERERRPRRDDARRERGAESGRGAAALEAGPGEAKLWVNLGTADGLGPGSIATAL 567

Query: 489 CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD-FRGYK 547
             +     + + A  ++P   +V V+ +             G +   +   KP   R   
Sbjct: 568 EDAGAPVGKVVRA-ELRPTFAYVFVAEEDAAAFETINGKQHGAKTLRVEKSKPRTERDAT 626

Query: 548 SSGFKSKNSQDGATK 562
                S ++  G  K
Sbjct: 627 PRPPPSPDAGPGEAK 641


>gi|315304037|ref|ZP_07874464.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
 gi|313627596|gb|EFR96302.1| ATP-dependent RNA helicase DbpA [Listeria ivanovii FSL F6-596]
          Length = 474

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 147/536 (27%), Positives = 239/536 (44%), Gaps = 74/536 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY + T VQ+ ++   L  KD++  +QTGSGKT AF + +A  ++ E 
Sbjct: 10  LSEEIKRAINELGYKDATPVQKEVIPVALTGKDIVAKSQTGSGKTAAFAIPIAEQVIWEE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL I PTREL VQV  E   +     +  A   G     +++ +L    H
Sbjct: 70  NK------PQALIIVPTRELGVQVKTECTNIGRFKRIKAAAIYGQSPFAKQKLELSQKNH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGRL DHI    LN+  +  +VLDE DEML +GF D +E IL   PKKR+ L FS
Sbjct: 124 IVVGTPGRLLDHIEKGTLNVDKVAYLVLDEVDEMLSMGFIDQVEDILQFLPKKRQNLFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K YQ D V + +A+E                 +++  + ++L      +
Sbjct: 184 ATMPEEMHDLIKRYQNDPVVIEMAAEKTNPITHIEMQT----ENKEKTLQDVLITENPDS 239

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+T+  V   + +L  +      + G L Q+ER  A+   + G++R  IATDVA R
Sbjct: 240 AIIFCNTKNQVDELSDLLQVNA---AKIHGGLRQEERFRAMDDFKSGKSRFLIATDVAGR 296

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ LVI+ +L    EN +HR GRTGRAG  G ++  +  N       +    N++
Sbjct: 297 GIDVENVTLVINYDLPIEKENYVHRIGRTGRAGNSGKAISFVKTNENPLLRDIEAMLNIT 356

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                      I+++    I++                                ++    
Sbjct: 357 -----------IQKKRKPTIIE--------------------------------VKASEE 373

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                ++  P    +  ++   +       GG +                    A   + 
Sbjct: 374 AFRKKQQKRPTIKKARGEKLNKNIMKXXXNGGKKKK----------------IRAVDFVG 417

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYLGGEK 540
            + +  GI  + IG I ++  ++FVE+       +   ++    KG +LK     K
Sbjct: 418 TISKLEGITSEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARK 473


>gi|255691171|ref|ZP_05414846.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
 gi|260623074|gb|EEX45945.1| ATP-dependent RNA helicase RhlE [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 200/362 (55%), Gaps = 1/362 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +A+ E+GY+  TS+QE  +   L ++D+L  AQTG+GKT +F + +   L   
Sbjct: 7   NIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQHL-QA 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL + PTRELA+Q+   ++     T V   V  GGV+   +   L+ G 
Sbjct: 66  NKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDMLRKGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    +++++++  VLDEAD MLD+GF  DI+ IL   PK+++ L F
Sbjct: 126 DILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQTLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I  L K+  K+ V++ I  ++     I      V   ++   +++IL+    +
Sbjct: 186 SATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQKAEDR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +  +  ++L +      A+ G  SQ  R +AL   + G+ +V +ATD+A+
Sbjct: 246 SVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVATDIAS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L LVI+ +L   PE  +HR GRTGRAG +G ++    Q  ++    + +    
Sbjct: 306 RGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVNDIQKLTGK 365

Query: 366 SV 367
            +
Sbjct: 366 KL 367


>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 203/374 (54%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +  ++ ++++E GY + T +Q   +      +DV+ +AQTG+GKT AF L +  
Sbjct: 16  TFADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGKTAAFTLPILH 75

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV +  ++
Sbjct: 76  RLMPLANSSASPARHPVRALILTPTRELADQVYENVKRYSLHTPLRSAVVFGGVDIGPQK 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P 
Sbjct: 136 EALRQGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  L ++Y    V + +A+ N     +   A  +    +  A+V++
Sbjct: 196 QRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATADTVTQIAYQMTGEAKRAAVVHL 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G K  IVF +T+   +R  + L     +  ++ G+ SQ +R  AL+  + G   V 
Sbjct: 256 VKSRGLKQVIVFSNTKIGTARLARQLELDGVKAESIHGDKSQADRMKALEAFKAGELEVL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R    
Sbjct: 316 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPEEERYLLD 375

Query: 359 LFREANVSVVWEPA 372
           + +     V     
Sbjct: 376 IEKLIKRQVPRGKL 389


>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 421

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 198/377 (52%), Gaps = 3/377 (0%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   +   I +A+S  GY   T +Q   +   L   DVL +AQTG+GKT  F L L 
Sbjct: 6   TTFDTLGLDPAILKAVSAEGYTTPTPIQAQAIPAVLEGHDVLAAAQTGTGKTAGFTLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +N R   A    AL + PTRELA QV   +        +   V  GGV +  ++R
Sbjct: 66  ERLI-QNPRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGIEPQKR 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  IV+ TPGRL D    + +++S L+ ++LDEAD MLD+GF  DI+ I+  +PK+
Sbjct: 125 AIARGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKE 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT SP I  LA    KD V + +A +N     +  +   V    +   ++ ++
Sbjct: 185 RQTLLFSATFSPEIKRLAAGMLKDPVLIEVARQNTTAEQVSQKVHHVDRHRKQELLIRMI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G K  +VF  T+   ++ +K L +      A+ G  +Q  R  AL+  ++ R RV +
Sbjct: 245 KEKGWKQVLVFTRTKHGANKLSKQLDQAGIPSEAIHGNKTQNARMKALKSFKENRVRVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG +G ++ ++  +  +    +
Sbjct: 305 ATDIAARGIDIAALPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHQLLRNI 364

Query: 360 FREANVSVVWEPAPSVE 376
            R     +     P  E
Sbjct: 365 ERFIKAEIPKIATPGFE 381


>gi|330878076|gb|EGH12225.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 629

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 216/479 (45%), Gaps = 23/479 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI------ 416
               +        + I   +A++    P   +       +      A  D          
Sbjct: 368 TKQKIADGDLMGFD-ITAVEAEK----PEVRERPDVRNSRGARPARADGDKNNGGRRDKG 422

Query: 417 --------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                   AA      R      E+           R    S   +    + D F+   
Sbjct: 423 KDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDDE 481


>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 486

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 209/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL   +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ + 
Sbjct: 72  RLLPHASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 DQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +       +R    +R
Sbjct: 372 IEKLIKRPLEVQRLTVDTPVRHHHEER 398


>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 423

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 132/385 (34%), Positives = 194/385 (50%), Gaps = 3/385 (0%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +   LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL + 
Sbjct: 6   KSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPII 65

Query: 60  STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             L+   D   P    + AL + PTRELA QV   +      T + V V  GGVS+  + 
Sbjct: 66  QRLIETKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQT 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ GA I+V TPGRL DH+  K + +SH + +VLDEAD MLD+GF  DI+ IL    +
Sbjct: 126 ENLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRMLDMGFMPDIKRILSRMNE 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT    I  LA    +    + +  +N     +      V  S +   +  +
Sbjct: 186 VRQTLFFSATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  
Sbjct: 246 IGSKNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRAL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+  LE V++ ++    E+ +HR GRTGRAG  G+++ ++ Q+       
Sbjct: 306 IATDVAARGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNSGLAISLMSQDEAYLLGD 365

Query: 359 LFREANVSVVWEPAPSVEAIRERDA 383
           + R  +  +  E     E   E+D 
Sbjct: 366 IERLLDTRLPQEWLEGFEPSLEKDL 390


>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
 gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
          Length = 521

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 136/474 (28%), Positives = 223/474 (47%), Gaps = 17/474 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   +  A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +
Sbjct: 1   MK-FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +N +        AL I+PTRELA+Q   EL  L +   V   V  GG  + R+ 
Sbjct: 60  LEEVDPKNPQI------QALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    I+VGTPGRL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P 
Sbjct: 114 HALKEHPQILVGTPGRLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  +   + KD   V+IAS+      +D   V     ++ +A+  +
Sbjct: 174 DRQTLLFSATMPDDIKKIGVKFMKDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRL 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + AIVF  T+  V   TK L    ++   + G+L Q  R   L+  + G  +  
Sbjct: 234 FDVEQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG  G+SV  + +        
Sbjct: 294 VATDVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRA 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLF------LDSIQGDEKKMVDVLLAKHD 412
           + +  N  +     PS E       +    +         +D+++ +  ++ +       
Sbjct: 354 IEKLINKRMAALKPPSAEEAHIARLKNAKAETYAVLGKTTIDNVEDEATEIANQY--DAK 411

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
               A      +      P +I     +  R    D    F+ G  + +  +  
Sbjct: 412 LIAAALLHALSNDDERTRPVDIAQEKPLPRRHSSSDHGHNFRSGRSNGNRGRNG 465


>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
 gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD1]
          Length = 480

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSV--EAIRERDAQR 385
            R     +       +EP P+   E I++R  Q+
Sbjct: 362 ERLIKREIPREVIAGFEPDPNAKPEPIQQRRGQQ 395


>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 599

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 194/385 (50%), Gaps = 6/385 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +     PA    AL + PTRELA QV   L        V   V  GGV ++ +   
Sbjct: 62  RL-TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   P+ +
Sbjct: 121 IKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDK 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA    K+   + +   N     I      V    +   +++I++
Sbjct: 181 QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQ 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +A
Sbjct: 241 QHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++  + +     + 
Sbjct: 301 TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQR 385
           R     +   P   +E     + ++
Sbjct: 361 RFTKQEI---PVQVLEGFGPEEGEK 382


>gi|284040525|ref|YP_003390455.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283819818|gb|ADB41656.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 475

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/481 (25%), Positives = 221/481 (45%), Gaps = 32/481 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +  A++E GY   T +Q+  +   L   DVL  AQTG+GKT A+ L +
Sbjct: 3   ITSFEQFELNRQLLNAVAELGYTVPTPIQQKTIPLSLGNHDVLGIAQTGTGKTAAYLLPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +++    P AL +APTREL +Q+ + +  L   T +      GG+    + 
Sbjct: 63  LMKV-----KYAQGKNPRALILAPTRELVMQINQAVSELGKYTDLRHLALYGGLGPKTQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  I+V TPGR  D  R   +    ++ +VLDEAD+M+D+GF   I  IL+  P 
Sbjct: 118 ETLRNGVDIIVATPGRFMDLYRSGEIVTKEIRTMVLDEADKMMDMGFMPQIRSILEIIPT 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVN 237
           KR+ L+FSAT    +  L+  + +  ++V +  +      +            + N +  
Sbjct: 178 KRQNLLFSATFGGRVERLSSEFLEAPIKVEVTPQASTADMVSQVIYEAPNFRTKINMLDY 237

Query: 238 ILRYHGAKNAIVFCSTR---ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++R    +  I+F  T+    ++ +F         ++  +     Q  R NA+   ++G 
Sbjct: 238 LMRQEDFQRVIIFARTKGTADNIYKFLSRKVIEPEKIRVIHANKGQNTRINAMDAFKEGN 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +V ++TDVAARGID+ ++  VI+ +L    E+ +HR GRTGRA R G ++  + +  + 
Sbjct: 298 IQVLVSTDVAARGIDVAEVSHVINFDLPLIYEDYVHRIGRTGRANRTGEAITFLTKAEEY 357

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             +++ R    ++  +P P+   + E   +   ++   L  I    +K         DP 
Sbjct: 358 HVQKIERIIKATIPRQPLPAGVVVAETPFE---EEQAMLREIDEQRRK--------EDPT 406

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            + A             ++IT ++    RD+ +      K    S    +  S+   S G
Sbjct: 407 FLGA----------FHEKKITNMAPGRERDKAQAKLSGAKKPSPSGPGTRSGSFSRKSGG 456

Query: 475 S 475
           S
Sbjct: 457 S 457


>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 408

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYAEHHHAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E  P  E
Sbjct: 362 ERLIKREIPQEVIPGFE 378


>gi|330984676|gb|EGH82779.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 625

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 22/477 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              AA   R  R          P          R + RA +         +    F 
Sbjct: 428 ATAAATGERPARQ---------PREKKPREGTPRSEQRASQPSIPRPAADRAPDEFR 475


>gi|117621566|ref|YP_856876.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562973|gb|ABK39921.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 466

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 120/400 (30%), Positives = 202/400 (50%), Gaps = 3/400 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E+GY   + +Q+  +   L  +D++ +AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLLRAVAEQGYDTPSPIQQQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLTESK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + SP +   AL + PTRELA QVG  +        +   V  GGVS++ +    + G  
Sbjct: 68  RKVSP-NRIRALVLTPTRELAAQVGESVRNYGKHLPIRSHVVFGGVSINPQMMATRRGLD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V  PGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 127 VLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRRILALLPKKRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  LA     +   + +A  N     I+        +++   + +++  +  + 
Sbjct: 187 ATFADEIRELATGLLDNPAVIEVAPRNSTAERIEQLVHPCDKANKIALLSHLVTSNNWQQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 247 VLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGSVKVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    +
Sbjct: 307 GLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQN 366

Query: 367 VVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMV 404
           +  E     EA RE   +  R +  PL  +     E++  
Sbjct: 367 IPCEQVAGFEASRETLDNIARGIGAPLRKEPRDPSEQRRA 406


>gi|297797303|ref|XP_002866536.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312371|gb|EFH42795.1| hypothetical protein ARALYDRAFT_496494 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 588

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 201/382 (52%), Gaps = 6/382 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F+  N P  I EA+++ G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 161 VKLFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  R      P+ L +APTRELAVQ+  E      ++GV      GG     + 
Sbjct: 221 LVHVSAQ-PRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQI 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 280 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 339

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    + +LA+ + +D  +  I S + + +  I+    +V   ++ N ++ 
Sbjct: 340 DRQTLLWSATWPREVESLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLT 399

Query: 238 ILRY-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+        ++F  T+    + T+ L    +  +A+ G+ +Q ER   L   + GR+ 
Sbjct: 400 LLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQPERDRVLAEFKSGRSP 459

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG KGM+      +  + A
Sbjct: 460 IMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFA 519

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             L +           P++ A+
Sbjct: 520 RELIKIL-QEAGQVVPPTLSAL 540


>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae FF5]
          Length = 435

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 193/366 (52%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIA 373


>gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
 gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
           LB400]
          Length = 543

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/556 (27%), Positives = 234/556 (42%), Gaps = 44/556 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 30  LSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSSP 89

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 90  AVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 150 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I TLA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 210 FSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNW 269

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 270 FQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 329

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +   
Sbjct: 330 ARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIK 389

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             V  E     E       + IL+         G           K D         R  
Sbjct: 390 RPVPQEVVAGFEPDPTAKPEPILRRGQGGGGGGGGRSPRQGQGAPKRDD-------ARRD 442

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            AG   P + +     +G+ + +         GG               G +     R  
Sbjct: 443 GAGSAKPAQRSGQRPANGQQQPKPQGAKPAGNGGQPRRD----------GQRHDDRPR-- 490

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
              +                         +A       +  K   G     LGG KP   
Sbjct: 491 --AVAHEGS--------------------AAQHAPRKPQAAKPQGGNPGALLGGTKPRND 528

Query: 545 GYKSSGFKSKNSQDGA 560
             +  G  +++ Q G 
Sbjct: 529 APR-GGQPTRSGQRGR 543


>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2654]
          Length = 474

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/477 (28%), Positives = 216/477 (45%), Gaps = 33/477 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITMLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 QLIDRGVDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLVPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++  I  +   +  +  RV +A +     +I         S RD      
Sbjct: 178 TRQTLFFSATMASEIERITNTFLSNPARVEVARQATTGENIAQEVCKFKASRRDRAATEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R   LQ 
Sbjct: 238 RRLLRALIDREGEACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSKRMETLQG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R  +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG +V +  
Sbjct: 298 FRDGTLRFLVASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRKGKAVMICE 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++  + + R     +    +P  +A               ++     EKK      +
Sbjct: 358 PRDEKNLDAVERLIEKEIPRIESPLGDA--------------PVEETPKPEKKSARSKPS 403

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                +      +  R    A +E    S  + + R    SR    G G R +   +
Sbjct: 404 DKPARED-----KPARDDKPARDEAPAKSEDASKSRSDTRSRGKPSGRGGRRDDAPT 455


>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [Bradyrhizobium sp. ORS278]
          Length = 473

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 190/373 (50%), Gaps = 4/373 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   +  AL E  Y   T +Q   +   L+ +DV+  AQTG+GKT +F L +
Sbjct: 1   MTSFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P +A   L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 61  LHRLLENRIKPQPKTA-RVLVLSPTRELSGQILDSFNTYGRHIRLSSTLAIGGVPMGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  ++V TPGRL D ++G  L +SH++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 120 RAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRMLDMGFINDIRKIVAKLPI 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA +  +D  RV +   +     I  R + V  S + + +  +
Sbjct: 180 KRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTVERIAQRVIQVDHSAKPSLLAQL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  
Sbjct: 240 LKNEPVNRALVFTRTKHGADKVVKGLEKAGIPAQAIHGNKSQNHRERTLAAFRTGEIRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAE 357
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G+++ ++   +      
Sbjct: 300 VATDIAARGIDVDGVSHVVNFDLPNVPETYVHRIGRTARAGADGVAISLVAGADEMSYLR 359

Query: 358 RLFREANVSVVWE 370
            + R    ++  E
Sbjct: 360 DIERLTKTTLPRE 372


>gi|295688310|ref|YP_003592003.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295430213|gb|ADG09385.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 475

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 188/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + + +AL+E+GY   T +Q   +   L+ KD+L  AQTG+GKT AF L +
Sbjct: 1   MTQFADLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L AE+ + +P      L ++PTRELA Q+    +      G+ V    GGV    + 
Sbjct: 61  LQRL-AEDRKPAPRRGFRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  ++V TPGRL DH+  K   +S  +  VLDEAD+MLDLGF   I  I     K
Sbjct: 120 KALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIASQLTK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+   I  LA    KD V+V++A +      ID R + +    +   +  +
Sbjct: 180 NRQNLFFSATMPSEIGKLAGELLKDPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF  T+    R  K L     +  ++ G+ +Q +R  AL   + G  R  
Sbjct: 240 FADSSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+  VI+ EL + PE  +HR GRT R G+ G+++     + +   + 
Sbjct: 300 VATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKD 359

Query: 359 LFREANVSVV 368
           + +    ++ 
Sbjct: 360 IQKATRQTIP 369


>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 518

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 236/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNEFDLSAELLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPDS 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTDLVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD--AQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +   +PA + EA + +   A + ++     ++I+G+ +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRGNFEKFAKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
 gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
           [Streptococcus sp. M334]
          Length = 524

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 145/451 (32%), Positives = 235/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   +   G+V  + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFNELNLSADLLAEIERAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIRTEEATI------QALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P+ 
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPES 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLQII 354

Query: 360 FREANVSVV-WEPAPSVEAIRERD--AQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +   +PA + EA + +   A + ++     ++I+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPASAEEAFQAKKHVALKKIERDFADETIRANFEKFGKDARKLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELAMYILSLT---VQDPDSLPEVEIAREKP 442


>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
 gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
           z3032]
          Length = 500

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 194/386 (50%), Gaps = 9/386 (2%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M + F+++     I  A++E+GY   T +Q   +   L  KD++ SAQTG+GKT  F L 
Sbjct: 1   MTMSFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L A+           AL + PTRELA QVG  +        +   V  GGVS++ +
Sbjct: 61  LLQRLTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  +++ TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P
Sbjct: 121 MMKLRSGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT S  I TLA+   ++   V +A  N     I      V    +   +  
Sbjct: 181 PKRQNLLFSATFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVHFVDKKRKRELLSY 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV
Sbjct: 241 LIGDGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +   
Sbjct: 301 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 360

Query: 358 RLFREANVSVV------WEPAPSVEA 377
            + R     +       +EP PS+ A
Sbjct: 361 DIERVLQREIPRMAIAGYEPDPSIPA 386


>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 510

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/379 (34%), Positives = 209/379 (55%), Gaps = 3/379 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   I  A++++GY + T +Q   +   L  +D++ +AQTG+GKT +F L + 
Sbjct: 1   MSFTELNLTPEILRAIADQGYTDPTPIQTQAIPHILEGRDIMGAAQTGTGKTASFTLPML 60

Query: 60  STLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + L +  N   SPA  P+  L + PTRELA+QV   ++       +  A   GGV +  +
Sbjct: 61  NLLQSGANTSASPARHPIRTLILVPTRELAIQVHESVKTYGKYLPLRYAAVYGGVDMEPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  I+V TPGRL DH++ K +N+S ++ ++LDEAD MLD+GF  DI+ IL   P
Sbjct: 121 TRELRAGVEILVATPGRLLDHVQQKAINLSKVEILILDEADRMLDMGFLPDIKRILALLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ LMFSAT S  I  LA    ++ V V +A  N     I +    V    +   + +
Sbjct: 181 SQRQSLMFSATFSDEIKKLAGKLLREPVLVEVARRNTITELITHVVHPVVRERKRELLAH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++    +  +VF  T+   SR    L        A+ G+ +Q +R+ AL   + G  RV
Sbjct: 241 LIKSQDLQQVLVFARTKHGASRLAHQLERDHISATAIHGDKTQTQRTEALAKFKQGVVRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  V++ EL +NPE+ +HR GRTGRAG KG +V ++ ++     +
Sbjct: 301 LVATDVAARGLDIEELPHVVNFELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDEAELLK 360

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +     +  +  P  E
Sbjct: 361 GIEKLLKFKLESKVVPGFE 379


>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 564

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 190/370 (51%), Gaps = 4/370 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       S        AL + PTRELA QV   +        +   V  GGV ++ + 
Sbjct: 62  RLAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK
Sbjct: 122 ERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA     D   + +   N     I      V    +   +++I
Sbjct: 182 AKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ H     +VF  T+   +   + L +H  Q +AL G  SQ  R+ AL+  + G+ R  
Sbjct: 242 IQEHDWSQVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ DL  V++ E+ + PE+ +HR GRTGRAG++G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFMME 361

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 362 IERFTKQEIP 371


>gi|146305460|ref|YP_001185925.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145573661|gb|ABP83193.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 628

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 221/480 (46%), Gaps = 18/480 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPDG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + ++      P  L + PTRELA QV    +        V A   GGV ++ + + L 
Sbjct: 68  HPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D    K +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +A S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITQG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANKVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRE-RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
               +            V    P V   R+ R+A +  Q     D  +G+          
Sbjct: 368 TKQKIPDGDLMGFDASAVEAERPEVREPRQPRNAGQKKQKAEGGDKPKGERHGSGRKDKG 427

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           K   ++  A      R G   P    P    +       D    +      DNF     +
Sbjct: 428 KDSGKEQKAKPQGQKRRG-QGPRNDGPSQPAAAIPPLPPDRDPEEFLDDEIDNFGNRVDY 486


>gi|110638956|ref|YP_679165.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281637|gb|ABG59823.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 446

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 6/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++     I +ALSE GY   T +Q   +   L+ KD+L  AQTG+GKT AF + +  
Sbjct: 2   LFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL+            +L + PTRELA+Q+G  L+     TG+   V  GGV+  R+   
Sbjct: 62  -LLSVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQNG  ++V TPGRL D +    +++ H++  VLDEAD MLD+GF  D+  +L + P KR
Sbjct: 121 LQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA N   +  +V +   +     I      V   +++N +V +L+
Sbjct: 181 QSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVLQ 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VF  T+    +  K+LAEH  +  A+ G  SQ  R NAL   +    R+ +A
Sbjct: 241 DPKIKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TD+AARGID+ +LE VI+ E+ + PE  +HR GRTGRAG KG +        +   +  E
Sbjct: 301 TDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLKDIE 360

Query: 358 RLFREANVSVVWEPAPSVE 376
           +L  +    +   P P ++
Sbjct: 361 KLISKKIPVIDEHPYPLMD 379


>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
 gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
          Length = 437

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 192/393 (48%), Gaps = 1/393 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQLLSQHE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPAKGRRPVRALILTPTRELAAQIGENVDAYSKYLRLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +    ++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEQNAV-DLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I+     V    +   +  ++     K 
Sbjct: 187 ATFSDDIKALANKLLHNPASVEVARRNTASEQIEQSVYFVDKKRKRELLSQMIGAGDWKQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 247 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKEGKIRVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 307 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
           +     P  E      A++I+       +I+G 
Sbjct: 367 IPRIALPGYEPDPTIKAEQIINGRQLPGAIRGG 399


>gi|226506900|ref|NP_001142117.1| hypothetical protein LOC100274281 [Zea mays]
 gi|194704910|gb|ACF86539.1| unknown [Zea mays]
 gi|194707190|gb|ACF87679.1| unknown [Zea mays]
          Length = 494

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 194/369 (52%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G  
Sbjct: 157 PILSPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 216

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 217 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 276

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+N+  D  +V I SE+ + +  I     +++ S + N +VN+       
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVTIGSEDLKANHAIVQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 337 SRILIFMDTKKGCDQTTRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 397 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELINILE 456

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 457 EAGQKVSSE 465


>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 383

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 198/380 (52%), Gaps = 2/380 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + I +AL E GY   T +Q   +   L  KD+L  AQTG+GKT AF + +  
Sbjct: 2   TFQDLKLIEPIKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L          S   AL + PTRELA+Q+G         T V   V  GGV    +   
Sbjct: 62  LLHENPVGKFERSRIRALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D I    + ++ L+  VLDEAD MLD+GF  D++ ++   P KR
Sbjct: 122 LAKGVDVLIATPGRLLDLINQGFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPGKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ PAI TLA    ++ V+V +   +     I      V  S++++ +++IL+
Sbjct: 182 QSLFFSATMPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSLLLHILQ 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF  T+    +  KVL +      A+ G  SQ  R NAL+  ++   RV +A
Sbjct: 242 DESIATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ DL  VI+ E+ + PE  +HR GRTGRAG KG+++    +  +   + + 
Sbjct: 302 TDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIALSFCDKEEKPYLKDIH 361

Query: 361 REANVSVVWEPAPSVEAIRE 380
           +    ++         A+R+
Sbjct: 362 KLIAKNIPVVNDHPFAAVRQ 381


>gi|310767076|gb|ADP12026.1| ATP-dependent RNA helicase RhlE [Erwinia sp. Ejp617]
          Length = 469

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N
Sbjct: 8   LNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    +  +V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKILAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAIDGFEPDPSIKA 384


>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 538

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTDENII------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     ++I+ + +K       L ++  P
Sbjct: 355 ENLTKKQMKPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFEKFKGDAIQLASEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPADQPEVEIAREKP 442


>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 480

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 195/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L +   L + N
Sbjct: 8   LNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVLQLLSSHN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  ++       +   V  GGVS++ +   L++G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMMKLRSGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    +   V++A  N     I     +V    +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLHNPEEVSVARRNTASEQITQHVHMVDKKRKRELLSFLIGRDNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GIDISELPHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDELKLLRDIERVLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAIEGYEPDPSIKA 384


>gi|259909026|ref|YP_002649382.1| ATP-dependent RNA helicase RhlE [Erwinia pyrifoliae Ep1/96]
 gi|224964648|emb|CAX56162.1| Putative ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283479042|emb|CAY74958.1| putative ATP-dependent RNA helicase rhlE [Erwinia pyrifoliae DSM
           12163]
          Length = 471

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 195/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N
Sbjct: 8   LNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +  +V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAIDGFEPDPSIKA 384


>gi|254457659|ref|ZP_05071087.1| putative helicase [Campylobacterales bacterium GD 1]
 gi|207086451|gb|EDZ63735.1| putative helicase [Campylobacterales bacterium GD 1]
          Length = 423

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ E+GY   T +Q+  +   L  KD+L  AQTG+GKT  F L +   LL+  
Sbjct: 8   LSAPLLKAIKEQGYTEPTPIQKQAIPVILNRKDILAGAQTGTGKTAGFTLPMLE-LLSRA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      AL + PTRELA QV   +E           V  GGV ++ +   L+ G  
Sbjct: 67  KHTSGKHHVKALILTPTRELAAQVAESVEVYGKHLPFKSCVIFGGVKINPQIVQLRKGID 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL DHI  K +++S +  ++LDEAD MLD+GF +DI  IL+  PK+R+ L+FS
Sbjct: 127 IVIATPGRLLDHISQKTIDLSKVDFLILDEADRMLDMGFINDIRKILEILPKQRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  L+         + +A  N     +      V    +   + +++     K 
Sbjct: 187 ATYSDEIKKLSDRLLNSPTLIEVARRNTASETVKQAVYPVDKERKRELLTHLINDGKWKQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R +  L +      A+ G  SQ  R+ AL   +    RV +ATD+AAR
Sbjct: 247 VLVFTRTKHGANRLSDQLEKDGITSAAIHGNKSQNARTKALADFKKSEVRVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ EL +  E+ +HR GRTGRAG +G ++ ++  +       + +  N  
Sbjct: 307 GIDIDQLPHVVNYELPNVSEDYVHRIGRTGRAGNEGEAISLVCVDELEYLANIEKLINKD 366

Query: 367 VV------WEPAPSVEA 377
           +       ++P PS++A
Sbjct: 367 IPKIHLKGFKPDPSIKA 383


>gi|194017071|ref|ZP_03055683.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
 gi|194010939|gb|EDW20509.1| ATP-dependent RNA helicase DbpA [Bacillus pumilus ATCC 7061]
          Length = 480

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/531 (25%), Positives = 241/531 (45%), Gaps = 68/531 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL    +   T VQ   L+     +D++V +QTGSGKT A+GL +   +    
Sbjct: 11  LSDDLKQALKALHFHTPTPVQHETLSVAFSRQDLIVKSQTGSGKTAAYGLPICEMVDWAE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P AL + PTRELA+QV ++L  L     +  A   G      ++ +L    H
Sbjct: 71  NK------PQALILVPTRELAMQVKQDLTSLGRLKRIKAAAIYGKAPFQAQKVELAQKNH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DH+    L++ +LK  VLDEADEML++GF + +  I++  P KR  ++FS
Sbjct: 125 IVCGTPGRVLDHLEKGTLSLENLKFFVLDEADEMLNMGFIEQVSSIIEYLPPKRMSMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  L++ + +    + IA E      I +  +      + + +   +      +
Sbjct: 185 ATMSDEMKKLSEQFLQSPKVIEIAREETSVPQITHTVIETEEEAKFSLLQRTIVIENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC+T+  V+  T  L +       + G + Q++R   +   ++G  R  IATD+AAR
Sbjct: 245 CIIFCNTQDRVNELTMKLDDWDVPCDKIHGGMRQEDRFAVMDEFKNGEFRYLIATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VIH +L    E  +HR+GRTGRAG+ G ++  + +N +   + L +EA + 
Sbjct: 305 GIDVSDMTHVIHYDLPYEKERYIHRTGRTGRAGKSGKTIAFMTKNAKPLIDELKQEAGID 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
              +P P+ E   +               ++G E+K+   +  ++    +    ++++  
Sbjct: 365 FKTQPYPTKEDAEQ--------------HVEGFEEKIETPVQKENKQAGVEKDIMKLYFN 410

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
           G                                              G K+K  A   + 
Sbjct: 411 G----------------------------------------------GKKKKLRAVDFVG 424

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
            + +  G+    IG I +Q   T+V++      L+   ++    KG QLK 
Sbjct: 425 TIAKIEGVAFDDIGIITIQDTKTYVDILNGKGPLVLNAMRHTTIKGKQLKV 475


>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 506

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 199/383 (51%), Gaps = 3/383 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI +AL++  Y   T +Q   +   L  +D+L  AQTG+GKT AF + +   L  +
Sbjct: 23  NISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQLLNEQ 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A    AL ++PTRELA+Q+   ++     T +     +GGVS   + R LQ GA
Sbjct: 83  PPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERALQQGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +  K +++ H++ +VLDEAD MLD+GF  D++ I+   P K++ L F
Sbjct: 143 DILIATPGRLLDLMNQKRIDLQHVEILVLDEADRMLDMGFIHDVKRIISKMPSKKQTLFF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   IT L K   ++ V+V I   +     I     L+   ++   +  +++     
Sbjct: 203 SATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVYLLETGNKQKQLNELMKDPSIV 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  + L +      A+ G  SQ  R  AL+  + G  RV +ATD+AA
Sbjct: 263 SALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKSGETRVLVATDIAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE 362
           RGID+ +L  VI+  L + PE  +HR GRTGRAG  G ++     +     R  E+L  +
Sbjct: 323 RGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEIPFLRDIEKLIGK 382

Query: 363 ANVSVVWEPAPSVEAIRERDAQR 385
           +   V     P   ++R     R
Sbjct: 383 SIPEVKDHDFPMSSSLRSAKVDR 405


>gi|290474026|ref|YP_003466900.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
 gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Xenorhabdus bovienii SS-2004]
          Length = 459

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 196/382 (51%), Gaps = 8/382 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I  A+ E+GYV  T +Q+  +   L  KD+L SAQTG+GKT  F L +   
Sbjct: 3   FESLGLKADILRAVEEQGYVEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQL 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +        AL + PTRELA QVG  +        +   V  GGVS++ +   L
Sbjct: 63  LSESPAQAKGRRPVRALILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D      +++SH++ ++LDEAD MLD+GF  DI  +L   P KR+
Sbjct: 123 RGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLPAKRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I +LA    +D V + +A  N     ID     V    +   +  ++  
Sbjct: 183 NLLFSATFSDDIKSLANKLLRDPVSIEVARRNSASEQIDQAVHFVDKKRKGELLSYMIGN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+   +R  + L++      A+ G  SQ  R+ AL   + GR R  +AT
Sbjct: 243 QNWQQVLVFTRTKHGANRLAEQLSQDGVTAAAIHGNKSQGARTRALADFKSGRIRALVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +    + R
Sbjct: 303 DIAARGLDIDQLPHVVNFELPNVAEDYVHRIGRTGRAEATGQAISLVCVDEHKLLHDIER 362

Query: 362 EANVSVV------WEPAPSVEA 377
                +       ++P PS++A
Sbjct: 363 LLKREIPRIAISGYDPDPSIKA 384


>gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
          Length = 449

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A  
Sbjct: 8   LSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  GAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +  +V +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G+++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRLAVPGYEPDPSIKA 384


>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
 gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
          Length = 449

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A  
Sbjct: 8   LSADILRAVAEQGYSEPTPIQRQAIPVVLSGRDLLASAQTGTGKTAGFTLPLLQKLSANT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  GAVRGRRPVRALILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +  +V +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGAIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G+++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRLAVPGYEPDPSIKA 384


>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 484

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 207/373 (55%), Gaps = 2/373 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  E
Sbjct: 10  LAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHE 69

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ G
Sbjct: 70  NSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIELKKG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 130 VEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y +D + + +A  N   S ++ R   V   D+  AI ++L   G 
Sbjct: 190 FSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGL 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A +F +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TDVA
Sbjct: 250 KQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALDAFKSGEVDLLVCTDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V +   +  R    + +   
Sbjct: 310 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLVADIEKLIK 369

Query: 365 VSVVWEPAPSVEA 377
             +  EP    E 
Sbjct: 370 KKIELEPLELQED 382


>gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 481

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 207/377 (54%), Gaps = 2/377 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +  ++ ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +   L+   
Sbjct: 25  LHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLA 84

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++  L+ G
Sbjct: 85  NTSASPARHPVRALILTPTRELADQVYESVKRYSKQTPLRSAVVFGGVDIGPQKEALRRG 144

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P +R+ L+
Sbjct: 145 CEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  L ++Y    V + +A+ N   + I   A  ++   +  A+V++++  G 
Sbjct: 205 FSATFSNEIRKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQKRAAVVHLVKSRGL 264

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V +ATDVA
Sbjct: 265 KQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGELEVLVATDVA 324

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R    + +   
Sbjct: 325 ARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGATGEAIALFTADEERFLLDIEKLIK 384

Query: 365 VSVVWEPAPSVEAIRER 381
             V          +  R
Sbjct: 385 REVPRGTLDVPAELVAR 401


>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 437

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 179/363 (49%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY   T +QE  +   L+ +D+L  AQTG+GKT AF + +   L   
Sbjct: 7   NLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPMLQLLSKP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +          AL + PTRELA+Q+    +       +   V  GGV    +   L  G 
Sbjct: 67  HTNTKIHKVIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTDALHRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +    +N+  ++  VLDEAD MLD+GF  D++ ++   P KR+ L F
Sbjct: 127 DILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPAKRQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     + V+V +   +     I      V   D+   +++IL+    +
Sbjct: 187 SATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLMHILQDKTIE 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    R  K L +   +  A+ G  SQ  R  AL   +    R+ +ATD+AA
Sbjct: 247 TALVFARTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRILVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+ EL + PE  +HR GRTGRAG  G ++       +   + + +   +
Sbjct: 307 RGIDVDELSHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKEFLDDIEKLIGL 366

Query: 366 SVV 368
            + 
Sbjct: 367 KLP 369


>gi|209559644|ref|YP_002286116.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 539

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 236/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVD---VLLAKHDP 413
                  +      + E     +++ A + ++    +++I+ +  K       L A+  P
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKKIERDFAVETIRSNFDKFKGDAVQLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELALYILSLT---VQDPDSLPEVEIAREKP 442


>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 538

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTELNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +  + +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTDENII------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGASIDKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +
Sbjct: 235 DVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQVDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     ++I+ + +K       L ++  P
Sbjct: 355 ENLTKKQMKPLKPATAEEAFQAKKKVALKKIERDFADETIRSNFEKFKGDAIQLASEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPADQPEVEIAREKP 442


>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
 gi|225201660|gb|EEG84014.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
          Length = 475

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 200/385 (51%), Gaps = 8/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  A+ E+GY   T +Q+  + P L  KDVL SAQTG+GKT AF L +
Sbjct: 1   MTDFTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +        AL + PTRELA Q+   ++       +   V  GGVS++ + 
Sbjct: 61  LEKLSQSATKTKGRQPVKALILTPTRELAAQIAENVKAYSRYIPIRSLVVFGGVSINPQM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  +++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +++  PK
Sbjct: 121 MKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRMLDMGFIHDIRRVINKLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  IT LA +   + V +++A +N     +D    LV    +   + ++
Sbjct: 181 KRQNLLFSATFSKEITGLANSLLNNPVSISVAPKNSAAESVDQYVHLVDKKRKTELLSHL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F  T+   ++  + L     +  A+ G  SQ  R+ AL   +DG+ +  
Sbjct: 241 IGLENWPQVLIFTRTKHGANKLAEHLNADGIKSAAIHGNKSQGARTRALADFKDGKLKAL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL    E+ +HR GRTGRA   G ++ ++  +       
Sbjct: 301 VATDIAARGLDIDQLPYVVNFELPQVAEDYVHRIGRTGRAAATGKAISLVCVDEHGLLAD 360

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + R     +       ++P PS++A
Sbjct: 361 IERLLKREIPRLALEGYDPDPSIKA 385


>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
 gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
          Length = 467

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 136/457 (29%), Positives = 216/457 (47%), Gaps = 26/457 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 ALIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +     R+ +A +      I+   V V  S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSGPARIEVARQATASETIEQAVVQVKPSRRDREGSEK 237

Query: 239 LRYHGA---------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                A          N I+FC+ +  V    K L ++ +   A+ G+L Q +R+  L  
Sbjct: 238 RTVLRALIDGEGDKLTNGIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRTRTLDS 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R+ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G ++ +  
Sbjct: 298 FREGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAITICT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP-SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
              ++  + + +     +     P   E ++E+ ++    D    D+ + D  K      
Sbjct: 358 PRDEKALDAVEKLIQKDIKRLENPVKPEPVQEKPSRSAKPDAAKPDTAKQDTAKADTGSR 417

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           A    +K A             PE  +P      RD 
Sbjct: 418 APRKEDKAA-----------QKPERSSPRGKYGKRDD 443


>gi|161784286|sp|Q5ACU6|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 539

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 203/404 (50%), Gaps = 12/404 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F+  N+   + E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +
Sbjct: 122 FKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPI 181

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L      +       AL +APTREL  Q+    + L +  G+  +  +GG+ +  + 
Sbjct: 182 LQSLWHAQQPY------FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQA 235

Query: 119 RDLQNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    H IV      +      KG ++ +LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 236 RDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 295

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR   +FSAT++  I  L +    + VRV ++S+ +   ++    +LV    ++  +++
Sbjct: 296 IKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIH 355

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K+ IVF  T A   R   +     F  V L G+LSQ +R  +L   +  +A +
Sbjct: 356 LLNEFMGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANI 415

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q       
Sbjct: 416 LVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYL 475

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           R+       +  E  P  E +   DA  +  D    ++I+  ++
Sbjct: 476 RIESVLGKKLPKEDKPPKEVL---DALHVHVDKATAEAIRQTKE 516


>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 484

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 138/373 (36%), Positives = 208/373 (55%), Gaps = 2/373 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  E
Sbjct: 10  LAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHE 69

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ G
Sbjct: 70  NSSASPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQTIELKKG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 130 VEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y +D + + +A  N   S ++ R   V   D+  AI ++L   G 
Sbjct: 190 FSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFFAVDGDDKRRAIRHVLNERGL 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A +F +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVA
Sbjct: 250 KQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGEVDLLVCTDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V +   +  R    + +   
Sbjct: 310 ARGLDIKDVPAVFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLAASSDTRLVADIEKLIK 369

Query: 365 VSVVWEPAPSVEA 377
             +  EP    E 
Sbjct: 370 KKIELEPLELQED 382


>gi|119357064|ref|YP_911708.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354413|gb|ABL65284.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           DSM 266]
          Length = 418

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 202/378 (53%), Gaps = 6/378 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI + I  AL E GY   T +Q   +   L+  D+L  AQTG+GKT AF + +   
Sbjct: 3   FESLNIIEPILLALREEGYSTPTPIQAEAIPIVLQGIDLLGCAQTGTGKTAAFAIPILQ- 61

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L+EN     +    +L + PTRELA+Q+G   +     TG+   V  GGV+ + +   L
Sbjct: 62  ILSENKLVDKSRKIRSLIVTPTRELAIQIGESFKAYGRHTGLTNTVIFGGVNQNPQTASL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D +    L++  ++ +VLDEAD MLD+GF  D++ IL   PKK++
Sbjct: 122 LRGVDILVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDVKKILAHLPKKKQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  LA     +  +V++   +     I+     V   ++++ ++++L+ 
Sbjct: 182 SLFFSATMPPEIVKLAATILHNPSKVSVTPVSSTVEIINQAIYFVDKGNKNSLLLDLLKD 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K ++VF  T+    +  K L +H     A+ G  +Q  R  AL   +    RV +AT
Sbjct: 242 KNIKTSLVFTRTKHGADKVVKYLLKHHITAEAIHGNKAQNARQRALNNFKAQTTRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
           D+AARGID+ DLE VI+ E+ + PE  +HR GRTGRAG KG ++       +   R  E+
Sbjct: 302 DIAARGIDVDDLEYVINFEMPNIPETYVHRIGRTGRAGAKGTALSFCDAEEKEYLRDIEK 361

Query: 359 LFREANVSVVWEPAPSVE 376
           L  +    +   P P ++
Sbjct: 362 LIAKKIPVIESHPFPLMD 379


>gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 371

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 198/366 (54%), Gaps = 2/366 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I  AL E+GY N T +QE  +   L+ +D+L  AQTG+GKT AF + + 
Sbjct: 1   MTFQELNIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +N          AL I PTRELA+Q+   +      TG+   V  GGV    +  
Sbjct: 61  QHL-YQNKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L  G  I+V TPGRL D +    ++++ +   VLDEAD MLD+GF  DI+ +L   PK 
Sbjct: 120 ELHKGIDILVATPGRLLDLMNQGFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKD 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+ PAI  L+++  ++ VRV +A  +     I+     V   D+ + ++N+L
Sbjct: 180 KQTLFFSATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ +VF  T+    +  ++L +      A+ G  SQ  R  AL   +  + RV I
Sbjct: 240 KKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRVLI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  LELVI+ +L   PE  +HR GRTGRAG  G ++    ++ +   + +
Sbjct: 300 ATDIAARGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCAEDERPMLKDI 359

Query: 360 FREANV 365
            +   +
Sbjct: 360 QKLTGI 365


>gi|149377730|ref|ZP_01895465.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149358015|gb|EDM46502.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 503

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 143/451 (31%), Positives = 229/451 (50%), Gaps = 14/451 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA++  GY   + +Q   +   L  K +L  AQTG+GKT AF L L S +    
Sbjct: 11  LDPAVLEAVAAVGYEKPSPIQAQTIPALLAGKHLLGVAQTGTGKTAAFALPLLSRID--- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +   AP  L +APTRELA+QV        +K      +   GG     + + L+ GA
Sbjct: 68  ---ASVMAPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFFPQIKGLRRGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P   +  +F
Sbjct: 125 QVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQRALF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y +DA  V I SE R    I    + V    + +A+  IL      
Sbjct: 185 SATMPPQIKKVAQTYLRDATEVKIESETRTVERISQFVLPVYAERKLDALTRILEVEPVD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+A  +   + L+     V  L+G+L+Q++R   ++ ++ G+  + +ATDVAA
Sbjct: 245 GTIIFVRTKAETTLLAEKLSARGHAVAPLNGDLNQRQREQTVEDLKRGKKDIIVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +  VI+ ++  + E  +HR GRTGRAGR+G ++ ++    +     L R  N 
Sbjct: 305 RGLDVPRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLERATNS 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIA------A 418
            +     PS  A+++   ++     L F +  +  +   +   +A+ +   IA      A
Sbjct: 365 PMESYELPSPNALKKMREEQFESQLLGFAEDGKLGKAMALLDEIAERNDMDIAMVAGALA 424

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            +L   + G    E+   + +VS     R D
Sbjct: 425 CYLEASQPGSLPLEQPEALPVVSATAPPRRD 455


>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 598

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 134/484 (27%), Positives = 212/484 (43%), Gaps = 12/484 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       +        AL + PTRELA QV   +        +   V  GGV +  + 
Sbjct: 62  RLSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  I+V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK
Sbjct: 122 DRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I
Sbjct: 182 DKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  
Sbjct: 242 INENNWSQVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMMD 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R     +   P   +E     + +      +   +I G   K         D  + AA
Sbjct: 362 IERFTKQEI---PVQVLEGFGPEEGEVAEPIAMGRQTIWGGAGKPPS-----RDVMQAAA 413

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
              R          + T               +A    G S  N  G        G+   
Sbjct: 414 KAARQEMMDRIRTTKATQPDRGGRAGGRGQAPKAGSDEGRSEGNAGGQGRGRNHAGASAN 473

Query: 479 AEAR 482
            + R
Sbjct: 474 NKPR 477


>gi|328910410|gb|AEB62006.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus
           amyloliquefaciens LL3]
          Length = 480

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/448 (29%), Positives = 218/448 (48%), Gaps = 12/448 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            ++++  G+   T +Q   +   L  KDV+  AQTG+GKT AFG+ L   +  E+     
Sbjct: 1   MKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIPLVEKMNPESPNI-- 58

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                A+ IAPTRELA+QV  EL  +       V    GG  + R+ R L+   HI+VGT
Sbjct: 59  ----QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPHIIVGT 114

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DHI  + + ++++  VV+DEADEML++GF DDIE IL + P + + L+FSAT+  
Sbjct: 115 PGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPA 174

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  +A+ +  +   V + ++    S+I    + V    + + +  +L     + AIVF 
Sbjct: 175 PIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQSPELAIVFG 234

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+  V    + L    +    + G+L+Q +R  AL+  ++G   V +ATDVAARG+D+ 
Sbjct: 235 RTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDIS 294

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V + ++  +PE+ +HR GRTGRAG+ GM++  I    +     + +     +    
Sbjct: 295 GVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTTKRKMDRMK 354

Query: 372 APSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLC 429
            P+++   E   Q  +        ++           LL  HD   + A  +++      
Sbjct: 355 EPTLDEALEGQQQVTVDRLRTTISENNLNFYMTAAAELLEDHDAVTVVAAAIKMA----T 410

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGG 457
              + TPV L           +  +   
Sbjct: 411 KEPDSTPVRLTDEAPMVSKRYKNQRTSK 438


>gi|332662156|ref|YP_004444944.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330970|gb|AEE48071.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 380

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 4/375 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   I  AL   GY   T +Q+  +   L  KD+L  AQTG+GKT AF + + 
Sbjct: 1   MTFKELNLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA+Q+           G+  AV  GGV+  ++  
Sbjct: 61  QLLYQDKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVE 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGRL D +  + L++ H+   VLDEAD MLD+GF  D++ I+   P++
Sbjct: 121 AIRGGLDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQR 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+ P I  LA     + V+V ++  +     ++     V   D+ N ++ +L
Sbjct: 181 RQSLFFSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K+A+VF  T+    +  + + +   +  A+ G  SQ  R +AL   ++G+ RV +
Sbjct: 241 RSPNVKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATD+AARGID+ +L  VI+ +L + PE  +HR GRTGRAG  G+++       +   R  
Sbjct: 301 ATDIAARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIALSFCDSEERAYLRDI 360

Query: 357 ERLFREANVSVVWEP 371
            +L  +   SV + P
Sbjct: 361 SKLIAKNIPSVNYHP 375


>gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
 gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
          Length = 523

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPNHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKISGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L+A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLVAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|139473559|ref|YP_001128275.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
 gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 539

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K + + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKAVILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|312963578|ref|ZP_07778059.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311282087|gb|EFQ60687.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 628

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 193/366 (52%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +A S + + + +++ + 
Sbjct: 188 LLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLLAHLITHG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIA 373


>gi|332971571|gb|EGK10521.1| ATP-dependent RNA helicase [Kingella kingae ATCC 23330]
          Length = 481

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 197/380 (51%), Gaps = 3/380 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 29  NLDKNILSALKSAGYDSPTPIQMQAIPAALDNRDIMASAQTGSGKTAAFLLPSLQKLTQR 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++     +P  L + PTRELA QV +  +              +GG S  ++ + L   
Sbjct: 89  SEK--SGKSPRVLVLTPTRELAAQVEKNAQIYSQNMKWLRSVTLVGGSSFGQQIKALSRP 146

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ ++P+ R+ L+
Sbjct: 147 IDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPEDRQTLL 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + I  E++Q    +        + ++  + +ILR    
Sbjct: 207 FSATWDGAVGKLARKLTKNPEVIEIEREDKQGKIEEQLLYCDDKNHKNRLLDHILRDANI 266

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 267 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 326

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N      ++ R  N
Sbjct: 327 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRSGIAISFAEVNEYMAVHKIERYIN 386

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             +       +E  R+R+  
Sbjct: 387 HKLPEVVIEGLEPTRKRNKN 406


>gi|119773945|ref|YP_926685.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           amazonensis SB2B]
 gi|119766445|gb|ABL99015.1| DEAD/DEAH box helicase domain protein [Shewanella amazonensis SB2B]
          Length = 432

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 128/414 (30%), Positives = 210/414 (50%), Gaps = 7/414 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE+      I +AL+E GY  +T +Q   + P  R +DVL SAQTG+GKT AF L +
Sbjct: 1   MK-FESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +  +   A+   AL +APTREL  Q+   ++       + V    GG     + 
Sbjct: 60  LQKLL-DTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+V TPGRL +H+    L+++ ++ +VLDEAD MLD+GF  DI+ ++ +  K
Sbjct: 119 QKLRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT S  +  LA    K    +     N   + +      V    +   +  +
Sbjct: 179 ERQTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSEL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF +TR    + T+ L         +  E +Q  R  AL+   +G+ RV 
Sbjct: 239 IGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           ++T+VAARG+D+PDLE V++ +L   PE+ +HR GRTGRAG+ G+++  + +  +R    
Sbjct: 299 VSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLAD 358

Query: 359 LFREANVSVVWEPAPSVEAIRERD--AQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + +     +     P  E +  RD   +++ +   F    + +   +  V   K
Sbjct: 359 IEKLIGQRLKRIVMPGYE-VSNRDLLLKQLQKRRSFAKKTRVESDAIAQVAAEK 411


>gi|189425609|ref|YP_001952786.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421868|gb|ACD96266.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 430

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 190/374 (50%), Gaps = 4/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+S  GY   T +Q   +   L  +D++ SAQTG+GKT AF +     L   
Sbjct: 7   NLHASIQKAISVCGYATPTPIQAEAIPQALSGRDLIASAQTGTGKTAAFIIPALERLAKP 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L + PTRELA QV   +        +     +GG+    + R L+   
Sbjct: 67  GPA---GIGPRVLVLTPTRELAAQVADSVARYGRFLRMRYGSIVGGMPYPDQVRLLRQPV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH+    +++S ++ +VLDEAD MLD+GF D ++ I  ++PKKR+ L+F
Sbjct: 124 DLIVATPGRLIDHLERGRIDLSRVELLVLDEADRMLDMGFTDAVDQIAAATPKKRQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           +AT+   +  LA    KD  R+ I+S    H  I+ R  L      +   + ++L     
Sbjct: 184 TATMDDPMARLAGRLLKDPSRIAISSPKENHDSIEQRMHLTDNLGHKHKMLHHLLEDPTI 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+       + L +      AL G+++Q  R+  L  +R G+ R  +ATDVA
Sbjct: 244 TQAIIFSATKRDADTLARDLYDRGLSAAALHGDMTQGARTRTLTNLRRGKVRFLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++  +        +R+ R   
Sbjct: 304 ARGLDINGISHVINFDLPRAAEDYVHRIGRTGRAGATGVAISFVSPADAVYLQRIQRYTG 363

Query: 365 VSVVWEPAPSVEAI 378
            +V     P +E +
Sbjct: 364 QTVQMHTIPGLEPV 377


>gi|326791603|ref|YP_004309424.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542367|gb|ADZ84226.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 477

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 137/525 (26%), Positives = 238/525 (45%), Gaps = 67/525 (12%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N  + + + +A +  G+   T VQE ++   LR++D++V +QTGSGKT AF + +  
Sbjct: 2   SFKNYGLEKSLLKAATLLGFNKPTPVQERVIPEVLRKQDLIVQSQTGSGKTAAFAIPICQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++ E ++      P AL + PTRELA+QV  +   +     +      G      ++++
Sbjct: 62  EVIWEENK------PQALVLTPTRELAIQVKEDFFQIGRFKRIKAVGLYGKAPFEVQQKE 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H+VVGTPGR+ DH+    L  SH+  +V+DEADEML +GF D +E I+ + P  R
Sbjct: 116 LSQKTHVVVGTPGRVLDHLERGTLEASHISYLVIDEADEMLRMGFIDQVESIIAALPLNR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             L+FSAT++P I  L + Y +    ++I ++  + ++I+   +      +   +  +  
Sbjct: 176 VTLLFSATMAPHIQQLCEKYLRTPKTIHITTDLSKPNNIEEIGIETHEQTKLAVLEAVTI 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ I+FC+ +  V    K L +  + V  + G++ Q++R   ++  R GR R  +A
Sbjct: 236 VENPESCIIFCNRKERVEMVWKRLNDLNYGVGKIHGDMEQKQRFAVMEDFRKGRFRYLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +  VI+ ++    EN +HR GRTGRAGR G +   I    +R    + 
Sbjct: 296 TDVAARGIDIDHITHVINFDVPEQAENYVHRMGRTGRAGRSGKTFIFIQPEDKRNLAVIE 355

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +                                       +   +  E+IA+  
Sbjct: 356 SYTMRKIP--------------------------------------MRTAYREEEIASA- 376

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            +     +  P +                   FK   G   N +      ++ G K K  
Sbjct: 377 KKAFEEKMKQPLQ-------------------FKETKGEVLNQEIMK-LHINAGKKTKMR 416

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
              ++  LC   GI  + IG I +Q   T+VE+     + + + +
Sbjct: 417 PVDIVGTLCHLPGITAEDIGIINLQDISTYVEILNGKGEKVFKLL 461


>gi|220909835|ref|YP_002485146.1| DEAD/DEAH box helicase domain-containing protein [Cyanothece sp.
           PCC 7425]
 gi|219866446|gb|ACL46785.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 7/384 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     + L   G+   T +Q   + P L  +DV+  AQTG+GKT AF L +   +  ++
Sbjct: 10  LSPARVQRLEALGFNEPTPIQIQAIPPLLAGRDVIGQAQTGTGKTAAFALPILERIDTQS 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL + PTRELAVQV + +    A   + V    GG ++ R+   L  GA 
Sbjct: 70  P------AVQALILTPTRELAVQVSQSIYNFKADPKIRVLAIYGGQAIERQIERLHKGAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D +    LN++ L  +VLDEADEMLD+GF  D++ IL  +P +R+M  FS
Sbjct: 124 VLVGTPGRVLDLLNRGVLNLNALAWLVLDEADEMLDMGFMPDVKQILSQAPAQRQMAFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT++P +  LA  + +    + +       S I+     +     +   +  +L     +
Sbjct: 184 ATMAPPVYRLATQFLRSPETITVEHPKAAPSRIEQVAYKVPRGWSKSTTLQLVLEMEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+F  TR   +  T  L  H + V    G+LSQ +R   LQ  R G+ R  +ATD+AA
Sbjct: 244 SAIIFVRTRKVAAELTSQLQSHGYSVDEYHGDLSQSQRERLLQRFRQGQIRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL  VI+ +L  + E+ +HR GRTGRAG+ G++V +     + +  ++ R    
Sbjct: 304 RGLHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKTGIAVSLFQPLERHKLGQIERHIRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD 389
            +  + AP+   I  R  +R+   
Sbjct: 364 KLTVQDAPNRTQIAARRLERMKDQ 387


>gi|145298914|ref|YP_001141755.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851686|gb|ABO90007.1| ATP-dependent RNA helicase RhlE [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 467

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 193/374 (51%), Gaps = 1/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E+GY   + +Q   +   L  +D++ +AQTG+GKT  F L +   L+   
Sbjct: 8   LAEPLLRAVAEQGYDTPSPIQLQAIPAVLAGRDLMAAAQTGTGKTAGFTLPMLQRLMESK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + SP +   AL + PTRELA QVG  +        +   V  GGVS++ +    + G  
Sbjct: 68  RKVSP-NRIRALVLTPTRELAAQVGESVRNYGKHLPMRSHVVFGGVSINPQMMATRRGLD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V  PGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 127 VLVACPGRLMDLYNQNAVKFDEVEILVLDEADRMLDMGFIRDIRKILALMPKQRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  LA     +   + +A  N     I+        +++   + +++  +  + 
Sbjct: 187 ATFAEEIRELATGLLNNPAVIEVAPRNSTAERIEQLVHPCDKANKIGLLSHLVTSNDWQQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L ++     A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 247 VLVFTRTKHMANRVAETLDKNGVSAAAIHGNKSQGARTRALAGFKDGNVKVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +  +  + + R    +
Sbjct: 307 GLDIDKLPQVVNFELPNVAEDYVHRIGRTGRAGAAGHAISLVAADEGKLIKAIERLTKQN 366

Query: 367 VVWEPAPSVEAIRE 380
           +  E     EA RE
Sbjct: 367 IPCEQVAGFEASRE 380


>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 510

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/390 (34%), Positives = 213/390 (54%), Gaps = 4/390 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   I +A+ E GY + T +Q   +   L  +DV+ +AQTG+GKT +F L + 
Sbjct: 33  ETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPII 92

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +
Sbjct: 93  QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQ 152

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P
Sbjct: 153 SEQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLP 212

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V 
Sbjct: 213 KERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVK 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G    
Sbjct: 273 LIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEVEA 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++  
Sbjct: 333 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 392

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL 387
            + +     +  +       +R     R L
Sbjct: 393 DIEKLIKRPLDLQRLTVDAPVRHHHEDRSL 422


>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 418

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/405 (30%), Positives = 207/405 (51%), Gaps = 3/405 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + LS+ G+   T +Q+  +   L+ +DVL +AQTG+GKT A+GL L   L  ++
Sbjct: 10  LDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLPLIQMLSRQS 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL +APTRELA QV   L+     T + +    GG S+  ++  L  G  
Sbjct: 70  REETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQQEQLAKGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+  K  +++ L+ +VLDEAD MLD+GF  DI+ I+   P++R+ L+FS
Sbjct: 130 ILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMPEERQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  LA    K+ V V +A+ N     +      V    +   +  ++     + 
Sbjct: 190 ATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAYLIGSRNWQQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L     +  +++G+ SQ  R  AL   + G+ R  IATDVAAR
Sbjct: 250 VLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  LE V++ ++    E+ +HR GRTGRAG+ G++V  + ++ +   + +    +  
Sbjct: 310 GLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQAIENLLDTR 369

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           +  E     E     + +  ++D     + +  EK+ +   L  H
Sbjct: 370 LPQEWLAGFE---PSEKENYVEDTPSKRTSRSAEKRKLKQKLKIH 411


>gi|121604151|ref|YP_981480.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593120|gb|ABM36559.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 571

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 197/387 (50%), Gaps = 3/387 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L L 
Sbjct: 1   MKFEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGGDLLGGAQTGTGKTAAFTLPLL 60

Query: 60  STLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L  E    +    +A  AL + PTRELA QV   +        +   V  GGV +  +
Sbjct: 61  QRLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL DH     L++S ++ ++LDEAD MLD+GF  DI+ +L   P
Sbjct: 121 IEKLRRGVDILVATPGRLLDHASQGTLDLSQVQILILDEADRMLDMGFIHDIKKVLALVP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+++ L+FSAT S  I  LA    ++ + + +   N     I      V  S +   + +
Sbjct: 181 KQKQTLLFSATFSDEIRELANGLLRNPLSIQVTPRNTTVQRITQTIHPVGRSKKKALLTH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+  H     +VF  T+   +   + L +     +AL G  SQ  R+ ALQ  ++G  R 
Sbjct: 241 IINEHNWSQVLVFTRTKFGANNVAEHLTKAGIPAMALHGNKSQTARTQALQGFKNGDIRA 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V ++  + +   +
Sbjct: 301 LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGQAVSLVCLDEEGFMQ 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
            + R    ++     P  EA     A+
Sbjct: 361 DIERFTKQNIENIVVPGFEAEPGEKAE 387


>gi|293602831|ref|ZP_06685270.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292818625|gb|EFF77667.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 414

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 197/382 (51%), Gaps = 6/382 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+ + 
Sbjct: 12  LADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQQK 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    
Sbjct: 72  PEARKPGRPRCLILTPTRELTAQVAESVQTYGKYTSLTSMVMFGGVNINPQISALRKPLD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +   V++   N     +     +V    + + I +I+R  G   
Sbjct: 192 ATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +D    V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R    +
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKT 371

Query: 367 VV------WEPAPSVEAIRERD 382
           +       W P+P+  A  ER 
Sbjct: 372 IERKPVEGWTPSPTSAAAFERQ 393


>gi|15675334|ref|NP_269508.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
          Length = 539

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|21910615|ref|NP_664883.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 539

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 522

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 192/370 (51%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +   LL   
Sbjct: 8   LSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLLTMP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 68  PAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALRRGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 128 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +       + +A  N     +  +   V    +   + ++++ H    
Sbjct: 188 ATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIKQHNWFQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AAR
Sbjct: 248 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +    +
Sbjct: 308 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRA 367

Query: 367 VVWEPAPSVE 376
           V  E     E
Sbjct: 368 VPQEVIAGYE 377


>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 523

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/464 (30%), Positives = 237/464 (51%), Gaps = 13/464 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           E++A   L +      A  E+          +      A K  G
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKPLPFKPSGSGFAGKGKG 458


>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
 gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 137/397 (34%), Positives = 216/397 (54%), Gaps = 13/397 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +   I  ALSE+GY   T +Q   +   L  KD++ +AQTG+GKT  F L +
Sbjct: 37  VQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPI 96

Query: 59  ASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LL   N   SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ 
Sbjct: 97  IQRLLPLANASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNP 156

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  
Sbjct: 157 QTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLL 216

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT SP I  LA +Y K  V + +A  N  + ++     LV    +  A+V
Sbjct: 217 PAHRQTLLFSATFSPEIKRLASSYLKHPVTIEVARSNSTNENVRQMVYLVEDGHKQAAVV 276

Query: 237 NILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++L+    +      IVF +++   SR  + L        A+ G+ +Q ER   L+  + 
Sbjct: 277 HLLKQRAEQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKS 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQN 351
           G     +ATDVAARG+D+PD+  V++ ++  + E+ +HR GRTGRAG  G ++ + +P N
Sbjct: 337 GTIDALVATDVAARGLDIPDMPCVVNFDVPYSAEDYVHRIGRTGRAGASGDALSIYVPGN 396

Query: 352 MQRRAERLFREANVSVVWEPA----PSVEAIRERDAQ 384
            +R    + +    S+         P+ E  R+ D +
Sbjct: 397 DERLLSDIEKLIKRSIPRGKLEGFDPTGERARQGDTE 433


>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 491

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY ++T +Q   +   L  +DV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL  EN   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +
Sbjct: 63  QRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R  L+FSAT SP I  LA +Y ++ V + +A  N   S ++ R   V   D+  AI +
Sbjct: 183 KTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHH 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G K A VF +++   +R ++ L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 VLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLVA 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +     +  E     E 
Sbjct: 363 DIEKLTKKKIDLEALEVEED 382


>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 489

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/380 (36%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY ++T +Q   +   L  +DV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL  EN   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +
Sbjct: 63  QRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R  L+FSAT SP I  LA +Y ++ V + +A  N   S ++ R   V   D+  AI +
Sbjct: 183 KTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAIHH 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G K A VF +++   +R ++ L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 VLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARLVA 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +     +  E     E 
Sbjct: 363 DIEKLTKKKIDLEALEVEED 382


>gi|223982748|ref|ZP_03632977.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
 gi|223965288|gb|EEF69571.1| hypothetical protein HOLDEFILI_00251 [Holdemania filiformis DSM
           12042]
          Length = 424

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 195/378 (51%), Gaps = 5/378 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +P    I +     GY   T +Q+  + P L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MK-FNELPIHPSILKNCQRMGYTTPTKIQQKAIPPVLEGRDLLGLAQTGTGKTAAFALPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +  +   A    AL + PTRELA+Q+    +       +   V  GGV    + 
Sbjct: 60  LDQLMKQPQKGKRAIK--ALVLTPTRELAIQIVDNFQLYGQGLPLKTVVIFGGVKQGAQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I++ TPGRL D +  + L++S ++  VLDEAD MLD+GF  D++ +      
Sbjct: 118 DQLKKGADILIATPGRLLDLVGQRLLDLSQVEIFVLDEADRMLDMGFIHDVKRVSALLVN 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT+   I  LA +  K+ VRV     +     I+ R   V  S++++ ++ +
Sbjct: 178 KKQTLLFSATMPKEIAGLAASLLKNPVRVEATPVSTPIEKIEQRVYYVEKSEKNDLLLRV 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+     +A+VF  T+    R  + L +   Q +A+ G  SQ  R  AL   ++   +V 
Sbjct: 238 LKKEEVTSALVFTRTKHEADRVVRFLTKGHVQAMAIHGNKSQNARQKALAAFKNHEIQVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L  VI+  + +  E  +HR GRT RAG++G+++     + +   + 
Sbjct: 298 VATDIAARGIDIEKLSHVINYNIPNISETYVHRIGRTARAGQEGIAISFCQNDERAYLKD 357

Query: 359 LFREANVSVVWEPAPSVE 376
           + +    ++     P  +
Sbjct: 358 IEKLIRYTIPVVKDPKAK 375


>gi|152992584|ref|YP_001358305.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424445|dbj|BAF71948.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 492

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 127/429 (29%), Positives = 212/429 (49%), Gaps = 11/429 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+   I  A++E G+   + VQ+  +   L   D++  AQTG+GKT AFGL + 
Sbjct: 1   MKFTDFNLKDTIQAAVAEAGFKEPSPVQKDAIPLVLEGHDMIAQAQTGTGKTAAFGLPIM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S + A+        +   L I PTRELA+QV  EL      +G+  A   GG +  ++  
Sbjct: 61  SMMKADG-------SVEGLVIVPTRELAMQVSDELFRFGKLSGLKTATVYGGTAYGKQIE 113

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++  + +V          + GK     H   VVLDEADEMLD+GF D+I+ I    PK+
Sbjct: 114 RIKQASIVVATPGRLQDLLMSGKIKLNPH--FVVLDEADEMLDMGFLDEIKNIFTFLPKE 171

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT+   I  LA+    +   V+I      +S I     +V   +RD+A+V ++
Sbjct: 172 RQTLMFSATMPNGIRKLAEQILNNPKTVSITKSESTNSKITQYYYVVQERERDDALVRLI 231

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y   +  I+FC  +  V R    L    F+V  L G++ Q++R   ++  + G   + +
Sbjct: 232 DYKNPEKCIIFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGIDIFV 291

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  V +  +  + E+ +HR GRTGRAG+ G ++ ++  N  R  +R+
Sbjct: 292 ATDVAARGLDVNDVTHVFNYHIPFDSESYVHRIGRTGRAGKTGEAITLVSPNELRTIKRI 351

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            ++    +  +  P+   ++      ++        I     ++V  L    D   IA  
Sbjct: 352 EKDVGTKMTTQVIPTRIEVQNNRNDELIAKIAQT-QITDKAIELVKTLQHDLDIVTIAHL 410

Query: 420 FLRIHRAGL 428
              + ++ +
Sbjct: 411 LASMVQSEI 419


>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
 gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
           114]
          Length = 505

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/494 (27%), Positives = 222/494 (44%), Gaps = 27/494 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L + 
Sbjct: 22  IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + +
Sbjct: 82  TLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDK 138

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  
Sbjct: 139 LIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN------ 233
           R+ L FSAT++P I  +   +     R+ +A +      I+   ++   S +D       
Sbjct: 199 RQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSETIEQGVLMFKASRKDREGTEKR 258

Query: 234 ---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +         NAIVFC+ +  V    K L ++ +    + G+L Q +R+  L   
Sbjct: 259 KVLRALIDAEGEKCTNAIVFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGF 318

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RDG  +  IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +   
Sbjct: 319 RDGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVP 378

Query: 351 NMQRRAERLFREANVSVVWEPAP--SVEAIRER--DAQRIL-QDPLFLDSIQGDEKKMVD 405
             +R  E + R     +     P  + EA +E+  D +    + P    +    +     
Sbjct: 379 RDERNLEDIERLVQREIPRLDNPLGTKEAPKEKAPDGEAAASEKPKRTRTRAPRKSDKPQ 438

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              A+  PE+               P +         R     ++   K  G        
Sbjct: 439 ETEAEKTPEE---------PTVDATPAQEPAQKPARSRGGRNRNANTGKDRGPGVIGLGD 489

Query: 466 SSWFSLSVGSKQKA 479
            +   + +  K + 
Sbjct: 490 HTPEFIGLSFKDRI 503


>gi|94990733|ref|YP_598833.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
          Length = 539

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/450 (30%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + +++   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVEQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|188587876|ref|YP_001920681.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498157|gb|ACD51293.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 480

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 201/377 (53%), Gaps = 7/377 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +   + +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   + 
Sbjct: 8   FE-LSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKID 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++      P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+ 
Sbjct: 67  WDENK------PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVGTPGR+ DHI    L++S +   V+DEADEML++GF   +E I+   PKKR  L
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   I  L   +    + + I S+N    ++ + A  V  + + + + NIL    
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEM 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + ++VFC T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+
Sbjct: 241 PETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDI 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+  +  VI+ ++    E  +HR GRTGRAG KG+++     +  R    +    
Sbjct: 301 ASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYI 360

Query: 364 NVSVVWEPAPSVEAIRE 380
              +  +  PS E I +
Sbjct: 361 GFKLEVKDLPSKEDIIK 377



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-- 528
           L+ G K+K  A  ++  + +  G+  + IG I VQ   ++V++       +   +K    
Sbjct: 409 LNGGKKKKIRAGDIVGAVTKIPGVTGEDIGIIDVQDLASYVDILNGKGKTVINGLKTATI 468

Query: 529 KGIQLK 534
           KG +LK
Sbjct: 469 KGKKLK 474


>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
 gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
           D16]
          Length = 628

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 129/419 (30%), Positives = 196/419 (46%), Gaps = 21/419 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  AL E GY   + +QE  + P L  +DVL  AQTG+GKT AF   +  
Sbjct: 2   TFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +     P     AL + PTRELA+Q+G   E       +  AV  GGV    +   
Sbjct: 62  RLSNKPASGHP---IRALILTPTRELAIQIGESFEHYGRHLALRCAVIFGGVGQAPQVEK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL D  +   ++++ L+  VLDEAD MLD+GF  D++ IL   P+K+
Sbjct: 119 LGKGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRMLDMGFIHDVKKILKWLPEKK 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  L  +      RV +   +     I      V   ++   +  ++ 
Sbjct: 179 QTLFFSATMPKEIAELVNSLLHHPARVAVDPVSSPVEAIRQSVYFVDRGNKTKLLSLLMD 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G KNA+VF  T+   ++  + L +      A+ G  SQ  R  AL   + G  R  +A
Sbjct: 239 QLGVKNALVFTRTKHGANKVARDLVKAGITAAAIHGNKSQTARQQALADFKSGAIRCLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+ +L  V +  L   PE  +HR GRTGRAG  G +V     + +   + + 
Sbjct: 299 TDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGHGGTAVAFCDFSEKPLLKEIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +    ++     P VE             P  +  +Q  ++     ++ + D +  AA 
Sbjct: 359 KLIGRAI-----PVVED-----------HPYPMVDLQAPKRDKNGRIINEEDAQARAAA 401


>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
 gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
           4047]
          Length = 538

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/488 (28%), Positives = 235/488 (48%), Gaps = 30/488 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTADNTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L + H++ ++LDEADE L++GF +DIE I+   P  
Sbjct: 115 ALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADECLNMGFLEDIEAIISRVPDD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +      + E     +++ A + ++     D+I+ + +K     +   A+  P
Sbjct: 355 EHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS-----------------GRDRFRDDSRAFKVG 456
           E++A   L +         E+                        GR       R  + G
Sbjct: 415 EELALYILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGNKNGKTGRGNRSRSGRDNRRG 474

Query: 457 GGSRDNFK 464
           G   +   
Sbjct: 475 GYRHEKRN 482


>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
 gi|142980808|sp|A1A4H6|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
 gi|296481114|gb|DAA23229.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
          Length = 765

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 218/449 (48%), Gaps = 15/449 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 253 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 430 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 490 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 549

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +  +      
Sbjct: 550 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQKSEAQINTAQ------ 603

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            R+   G  AP      S    ++  + +
Sbjct: 604 -RLLEKGKEAPNPEPERSWFQTKEERKKE 631


>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 480

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 11/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 5   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 64

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +  +   A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 65  RLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 125 ALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 185 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 245 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTLQVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 305 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 364

Query: 360 FREANVSVV------WEPAPSV--EAIRERDAQR 385
            R     +       +EP P+   E I++R  Q+
Sbjct: 365 ERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQ 398


>gi|330886235|gb|EGH20136.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. mori str.
           301020]
          Length = 625

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 218/474 (45%), Gaps = 16/474 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVSRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              AA      R      E+           R    S        + D F+   
Sbjct: 428 ---AAASATGERPARQPREKKPREGTPRSEQRASQPSIPRPAADRAPDEFRDDE 478


>gi|225442260|ref|XP_002279117.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743075|emb|CBI35942.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 190/369 (51%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + +++ G+   T +Q       L+ +DV+  A+TGSGKT+A+ L     + A+ 
Sbjct: 107 LPEYVMQEITKAGFAEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYLLPAIIHVNAQ- 165

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G  
Sbjct: 166 PILAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSRIKNTCIHGGVPKGPQIRDLQKGVE 225

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +S
Sbjct: 226 IVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWS 285

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+ +  +  +V I S + + +  I     +V+ + + N +V +       
Sbjct: 286 ATWPKEVEQLARKFLYNPCKVVIGSADLKANHAIRQHVEIVSENQKYNRLVKLLEDIMDG 345

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 346 GRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVA 405

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 406 ARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILE 465

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 466 EAGQRVAPE 474


>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 551

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/506 (27%), Positives = 214/506 (42%), Gaps = 21/506 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E GYV+ T +Q   L P +  +D+   AQTG+GKT AF L +   L  EN
Sbjct: 47  LAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHRLSLEN 106

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +P      L ++PTRELA Q+                V  GGV++ R+ R +  G  
Sbjct: 107 RR-APRRGCRVLVLSPTRELASQIAESFSDYGRHLPYTSTVVFGGVNISRQERAIAPGVD 165

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + L +  ++ +VLDEAD+MLDLGF   ++ I+   P +R+ L FS
Sbjct: 166 ILVATPGRLIDLVDRRALTLEGVEILVLDEADQMLDLGFIHALKRIVKMLPARRQSLFFS 225

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  Y  + V+V +         +D + +      +   + ++LR    + 
Sbjct: 226 ATMPKNIAGLADQYLSNPVQVAVTPVATTAERVDQQVIFCHTGAKQALLNHVLRDPKIER 285

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L +      A+ G  SQ +R  AL   RDG  RV +ATD+AAR
Sbjct: 286 VLVFTRTKHGADRVVRGLDKVGIVGAAIHGNKSQPQRERALAAFRDGSCRVLVATDIAAR 345

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ +L + PE+ +HR GRT RAG +G ++       +     + R     
Sbjct: 346 GIDVEGVTHVVNYDLPNVPESYVHRIGRTARAGAEGQAISFCNDEERAYLRDIERTTRQK 405

Query: 367 VVWEPAPS------------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           V     P               A   R   R  Q        +   +        + +  
Sbjct: 406 VPVVGFPEGFQPPSRQEAQETAAEEARRPPRQPQGRPGQRQGRPGGRGQEGRGEGRGEHR 465

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
              A   R         ++           +  D  R  + G G     +       + G
Sbjct: 466 AHEARGGRPGGQPGHRQDQRQDSRGPRPDGQRSDQRRPERAGEGRPQGARPQGG-RPNDG 524

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIG 500
            +  A          RS     ++IG
Sbjct: 525 RRGDARP-------ARSGAEGGRAIG 543


>gi|163789554|ref|ZP_02183992.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159875086|gb|EDP69152.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 483

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/544 (26%), Positives = 255/544 (46%), Gaps = 70/544 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   I   I  AL+   Y + T VQE ++   L  KDV+V +QTGSGKTV++G+ L 
Sbjct: 5   KTFKEFAISDEIVTALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            T+  E ++      P  L + PTRELA+QV  +L  +     V      G  S   ++ 
Sbjct: 65  ETVDWEENK------PQVLVLVPTRELAIQVKEDLMNIGRLKRVKATAVYGKASFDTQKS 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+  +HIVVGTPGR+ DH++     +  +  +VLDEADEML++GF D +E I++  P +
Sbjct: 119 ELKQKSHIVVGTPGRVLDHLQKGTFKVEKIDCLVLDEADEMLNMGFADQVEAIINFLPAE 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT+   I  +A  Y K   +  +          I   +V V    ++  ++++
Sbjct: 179 RQTLLFSATMPKEIERIASFYMKQDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    A + ++FC+T+ +V+     L +    +  + G + Q++R + +   R GR R  
Sbjct: 239 LTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  V++ ++    E+ +HR+GRTGRAG+ GM++ ++    ++    
Sbjct: 299 VATDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNE 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +   A  +V+    P+   ++                                       
Sbjct: 359 VKAYAGQTVIEVSLPTTRLVQSHKT----------------------------------- 383

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                  +     +E  P+  V  ++  RD ++ +  G                 G K+K
Sbjct: 384 -------SFGKKLQERPPLKQVRSKELNRDITKVYFNG-----------------GKKKK 419

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKYL 536
             A   +  + +  GIN   IG I +Q ++T++++      L+ + ++    KG  LK  
Sbjct: 420 MRAVDFVGTIAKIPGINADDIGIITIQENVTYIDILNGKGPLVIQEMQTRTIKGKTLKVR 479

Query: 537 GGEK 540
              K
Sbjct: 480 KARK 483


>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 431

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 129/409 (31%), Positives = 207/409 (50%), Gaps = 3/409 (0%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  +    I  A+S+ GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+       P++A   L + PTRELA QV   +        +     +GG     + + L
Sbjct: 63  LVDNPAPVQPSNA-RVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GAHI+V TPGRL +H+    L++S ++ +V+DEAD +LD+GF  D++ IL +  K R+
Sbjct: 122 KAGAHIIVATPGRLLEHLTACNLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         V++  +N     + +    V    +   +  ++  
Sbjct: 182 NLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF STR S     + L     +   + GE +Q  R  AL+   +G+ RV +AT
Sbjct: 242 QNWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+PDLE V++ +L    E+ +HR GRTGRAG++GM++  + +  +R    +  
Sbjct: 302 EVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLLEIEA 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                +     P  E     +  + LQ+          E   V  ++A+
Sbjct: 362 LIGQKIRRIMVPGYEVSSRDELIKQLQERRRFGKRPQREDNAVAQVMAE 410


>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 473

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 144/480 (30%), Positives = 217/480 (45%), Gaps = 29/480 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A     + A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ---ITALARGRARARMPRSLVLCPTRELAAQVAENFDTYAKYVKLTKALLIGGVSFKEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  RV +A +      I+  AV    S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPERVEVARQATASETIEQGAVFFKGSRRDREATEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAIVFC+ +  V    K L +H +    + G+L Q +R+  L  
Sbjct: 238 RDVLRQIIDREGEKCTNAIVFCNRKVDVDIVAKSLKKHGYNAEPIHGDLDQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R+ IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +  ++ 
Sbjct: 298 FRDGSIRLLIASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGREGKAFTIVS 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++  E + +     +     P++ A     A     +P    S    EKK   V   
Sbjct: 358 PRDEKNFEDVEKLLQKEIPRVELPNMSA----PAAVPTPEPEDTASEDQGEKKSTRVRSR 413

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              PE+               P      S     DR   + R  +   G          F
Sbjct: 414 SKKPER-----------EESKPARAEKPSAPRRNDRGDRNDRNDRSDKGVVGMGDHMPEF 462


>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
           jacchus]
          Length = 764

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 192 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 251

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 252 PRR---GPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEVALRAAP 308

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 309 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 368

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 369 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 428

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 429 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQMQRLEALRRFKDEQIDILVAT 488

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 489 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 548

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 549 AAKAPVKARILPQDVVLKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 604

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 605 LEKGKEAVVQEPERSWFQTKEERKKEK 631


>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 206/366 (56%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   I  A+ E+GY   T +QE  +   L  +D+L +AQTG+GKT AF L +   L    
Sbjct: 8   LSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL ++PTRELA Q+G  ++       +      GGV++  + ++L+ G
Sbjct: 68  NTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKYLPLRATTVFGGVNMDPQTQELRRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL DHI+ K + ++ ++ +VLDE D MLD+GF  DI  I+   PK+R+ L+
Sbjct: 128 VEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLPKERQTLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +P I  LA ++      V +A +N  +  ++     V    +   + +++R    
Sbjct: 188 FSATFAPEIKRLAADFMHAPQTVEVARQNATNDQVEQLVFQVDNFKKRQLLAHLIRSREM 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+ S  +  + L        A+ G+ +Q  R   L   ++G+ RV +ATDVA
Sbjct: 248 SQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGARLETLAGFKEGKLRVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ EL ++PE+ +HR GRTGRAG KG+++ ++  +  R+ E + +   
Sbjct: 308 ARGLDISELPYVVNFELPTSPEDYVHRIGRTGRAGAKGIAISLMCPDESRQHEAIEKLTK 367

Query: 365 VSVVWE 370
            ++  +
Sbjct: 368 QTLTPQ 373


>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 539

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 235/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     D+I+ +  K       L A+  P
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKKIERDFADDAIRSNFDKFKGDAIQLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELALYILSLT---VQDPDSLPEVEIAREKP 442


>gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
          Length = 523

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|229593097|ref|YP_002875216.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364963|emb|CAY53082.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 628

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +A S +   + +++   
Sbjct: 188 LLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLAHLITAG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIA 373


>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 538

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/488 (28%), Positives = 236/488 (48%), Gaps = 30/488 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTADNTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDH 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +      + E     +++ A + ++     D+I+ + +K     +   A+  P
Sbjct: 355 EHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS-----------------GRDRFRDDSRAFKVG 456
           E++A   L +         E+                        GR       R  + G
Sbjct: 415 EELALYILSLTVQDPDTLPEVEIAREKPLPFKYVGGGHGNKNGKTGRGNRSRSGRDNRRG 474

Query: 457 GGSRDNFK 464
           G   +   
Sbjct: 475 GYRHEKRN 482


>gi|257426220|ref|ZP_05602635.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428878|ref|ZP_05605272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431487|ref|ZP_05607860.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434197|ref|ZP_05610547.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257437110|ref|ZP_05613150.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282914927|ref|ZP_06322707.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282925469|ref|ZP_06333123.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|293508999|ref|ZP_06667786.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510911|ref|ZP_06669610.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
 gi|293547513|ref|ZP_06672188.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257270925|gb|EEV03098.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274220|gb|EEV05737.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257277728|gb|EEV08398.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257280836|gb|EEV10981.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283503|gb|EEV13630.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282312870|gb|EFB43271.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321130|gb|EFB51461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|290919633|gb|EFD96706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291094703|gb|EFE24975.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466196|gb|EFF08723.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus M809]
          Length = 506

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVLGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|328958182|ref|YP_004375568.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
 gi|328674506|gb|AEB30552.1| ATP-dependent RNA helicase [Carnobacterium sp. 17-4]
          Length = 488

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/544 (27%), Positives = 256/544 (47%), Gaps = 70/544 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE   I   I  AL+   Y + T VQE ++   L  KDV+V +QTGSGKTV++G+ L 
Sbjct: 10  KTFEEFAISDEIIAALTSLRYFHPTKVQEEVIPLALEGKDVIVESQTGSGKTVSYGVPLC 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E ++      P  L + PTRELA+QV  +L  +     V      G  S   ++ 
Sbjct: 70  EKVDWEENK------PQVLVLVPTRELAIQVKEDLMNVGRLKRVKATAVYGKASFDTQKS 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+  +HIVVGTPGR+ DH++     I  ++ +VLDEADEML++GF D +E I++  P +
Sbjct: 124 ELKQKSHIVVGTPGRVLDHLQKGTFKIEKIECLVLDEADEMLNMGFADQVEAIINFLPAE 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT+   I  +A  Y K   +  +          I   +V V    ++  ++++
Sbjct: 184 RQTLLFSATMPKEIERIASFYMKPDKQSIVIETTELSKPKIIQSSVKVQEDKKEQQLLDL 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    A + ++FC+T+ +V+     L +    +  + G + Q++R + +   R GR R  
Sbjct: 244 LTVENADSCMIFCNTQEAVNNLYTFLNKAGLPIDKIHGGMVQEDRFSVMDDFRQGRFRYL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  V++ ++    E+ +HR+GRTGRAG+ GM++ ++    ++    
Sbjct: 304 VATDVAARGIDIENVTHVVNFDVPVEKESFVHRTGRTGRAGKTGMALTLVTPKEEKWWNE 363

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +   A  +V+    P+   ++                                      +
Sbjct: 364 VKEYAGQTVIEVSLPTTRLVQSHK-----------------------------------S 388

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            F +  +       E  P+  V  ++  R  ++ +  GG                  K+K
Sbjct: 389 AFEKKLQ-------ERPPLKQVRSKELNRGITKVYFNGGK-----------------KKK 424

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV--KLDKGIQLKYL 536
             A   +  + +  GIN   IG I +Q ++T++++      L+   +  +  KG +LK  
Sbjct: 425 MRAVDFVGTIAKIPGINADDIGIITIQENVTYIDILNGKGPLVIEEMQDRTIKGKKLKVH 484

Query: 537 GGEK 540
              K
Sbjct: 485 KARK 488


>gi|223043911|ref|ZP_03613952.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|314934151|ref|ZP_07841512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|222442626|gb|EEE48730.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus capitis SK14]
 gi|313653056|gb|EFS16817.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 511

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 236/483 (48%), Gaps = 15/483 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPS 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 DQRQTMLFSATMPKAIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H    AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPDLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +Q+ +  DS +   +++   LL ++D  
Sbjct: 354 QIEDVNGRRMNALRPPHRKEVLKAREDDIKEKVQNWMSKDS-EPRLQRISSELLEEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           ++ A  L+ +  A      ++T    ++ ++R      + +     R N K  +    S 
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRNSRGGGSRRGNNNKRGNGKFDNKNRRSK 472

Query: 474 GSK 476
           GSK
Sbjct: 473 GSK 475


>gi|124249330|ref|NP_694705.2| probable ATP-dependent RNA helicase DDX27 [Mus musculus]
 gi|74140985|dbj|BAE22077.1| unnamed protein product [Mus musculus]
 gi|74210620|dbj|BAE23664.1| unnamed protein product [Mus musculus]
 gi|123240386|emb|CAM17306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Mus musculus]
 gi|148674548|gb|EDL06495.1| mCG14602, isoform CRA_c [Mus musculus]
          Length = 760

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 249

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A+    L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 250 PRQ---AAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 306

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 307 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 366

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 367 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR 426

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 427 TFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 486

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 487 DVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 546

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M             A   
Sbjct: 547 AAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQ----IDTAQRL 602

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 603 LAKGKETADQEPERSWFQTKEERKKEK 629


>gi|82751683|ref|YP_417424.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|123548216|sp|Q2YUH3|Y1965_STAAB RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAB1965c
 gi|82657214|emb|CAI81654.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 506

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVWKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 129/414 (31%), Positives = 213/414 (51%), Gaps = 5/414 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE+      I  A++E GY ++T +Q+  +    R +DVL SAQTG+GKT AF L +
Sbjct: 1   MK-FESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +N + +  S    L + PTRELA QV   +        + V    GGV +  + 
Sbjct: 60  LQR-MCDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQS 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA ++V TPGRL +HI    L++S+++ +VLDEAD MLD+GF  DI+ IL +  K
Sbjct: 119 QKLKRGADVIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT S  +  LA +  +    + +  +N     +      V    +   I  +
Sbjct: 179 KRQNMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRELISEL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF +TR +  +  K L         + GE +Q  R  AL+   +G+ RV 
Sbjct: 239 IGTKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D+ +LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    
Sbjct: 299 VATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLAD 358

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + +     +     P  E   RE   ++I +   F    Q  +     ++  K+
Sbjct: 359 IEKLIGQPIRRVTVPGYEVGSREVLLKQIEKRRSFAKKQQRGDNAGAQMIAEKN 412


>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 461

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 205/385 (53%), Gaps = 4/385 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   I  AL E GY   T +Q   +   L   D++  AQTG+GKT AF L +
Sbjct: 1   MNNFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPV 60

Query: 59  ASTLL-AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L+   +   SPA  A  AL + PTRELA+QV   ++     + +   V  GGV +  
Sbjct: 61  LQKLMPFASSSPSPARHAVRALILVPTRELAIQVEASVKAYAKYSHLRSLVVFGGVDIKT 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF  D++ IL   
Sbjct: 121 QTPHLRAGIEILVATPGRLLDHIEQKSVQLNQVQMLVLDEADRMLDMGFMPDLKRILALL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ LMFSAT S  I  L+  +  +   + +A  N    ++  +  LV   ++   + 
Sbjct: 181 PRQRQNLMFSATFSAEIKKLSAEFLVNPKLIEVARSNATSENVTQKVYLVGHEEKHALLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++LR  GA   +VF  T+ + SR  + L    F   A+ G+ SQ ER  AL   + G+  
Sbjct: 241 HLLRGTGAVQTLVFTKTKLTASRIARQLQREGFASDAIHGDKSQLERMQALDAFKSGKIT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARG+D+  L +VI+ E+ S  E+ +HR GRTGRAG  G+++ ++    ++  
Sbjct: 301 VLIATDVAARGLDIDQLPVVINYEIPSAAEDYVHRIGRTGRAGAFGVAISLVAPEEEKYL 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
             + +    ++     P+ E    R
Sbjct: 361 LEIEKLIKCTIQRVELPASEKPLAR 385


>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 201/391 (51%), Gaps = 4/391 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE+      I  A++E GY N+T VQ+  +    R +DVL SAQTG+GKT AF L +
Sbjct: 1   MK-FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +         ++A  AL + PTRELA QV   +        + V    GG+ +  + 
Sbjct: 60  LQKMHERPMTVQHSNA-RALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA I+V TPGRL +HI    L++S+++ +VLDEAD MLD+GF  DI+ IL +  K
Sbjct: 119 QKLKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S A+  LA +       ++   +N   + +      V    +   +  +
Sbjct: 179 KRQNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSEL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF +TRA   +    L         + GE +Q  R  AL+   +G+ RV 
Sbjct: 239 IGTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    
Sbjct: 299 VATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLAD 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           + +     +     P  E        + ++ 
Sbjct: 359 IEKLIGQKIRRITVPGYEVSSRELLLKTIEK 389


>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 494

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 201/372 (54%), Gaps = 3/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+ +  A+++ GY   T +Q   +   +   DV+  AQTG+GKT  F L L   L    
Sbjct: 9   IPE-LQRAVADAGYTEPTPIQRQAIPIVIAGNDVMGGAQTGTGKTAGFTLPLLHRLARHA 67

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA     AL +APTRELA+QV   ++       +      GGV ++ + ++L+ G
Sbjct: 68  NTSTSPARHQTRALILAPTRELAMQVYESVKTYSKHLPLRATCIYGGVDMNPQIQELRRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL DH++ K +N++ ++ +VLDEAD MLD+GF  DI+ IL   P  R+ L+
Sbjct: 128 IEIVIATPGRLLDHVQQKTINLTQVEMLVLDEADRMLDMGFIPDIKRILALLPASRQSLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA    K+   + +A  N     I +R   V+   + N + ++LR+   
Sbjct: 188 FSATFSDEIKKLADQMLKNPQLIEVARRNMVSETITHRVHPVSSGMKRNLLAHLLRHQPD 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  T+    R    L  H     ++ G+ SQQ+R+  L+  + G+ RV +ATDVA
Sbjct: 248 TQALVFVDTKLVCGRLAHFLERHSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  VI+ EL    E+ +HR GRTGRAG +G +V ++    +     + +   
Sbjct: 308 ARGIDIDELPYVINYELPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEEKHLLADIQKLIK 367

Query: 365 VSVVWEPAPSVE 376
           + +  E  P  E
Sbjct: 368 LEIPQEVVPGFE 379


>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 539

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFIEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 482

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 207/369 (56%), Gaps = 4/369 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL   N   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ + 
Sbjct: 72  RLLPLANTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P 
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPT 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSPNERKQLAD 371

Query: 359 LFREANVSV 367
           + +     +
Sbjct: 372 IEKLIKRPL 380


>gi|331005516|ref|ZP_08328893.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
 gi|330420663|gb|EGG94952.1| ATP-dependent RNA helicase [gamma proteobacterium IMCC1989]
          Length = 410

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/405 (27%), Positives = 201/405 (49%), Gaps = 4/405 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    I +A++  GY  +T +QE  + P  R +DVL  AQTG+GKT AF L +   ++ +
Sbjct: 7   DFSPEIQKAITGCGYEKMTPIQEQAIVPARRGRDVLACAQTGTGKTAAFALPILQQMIDK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +    + P AL + PTRELA Q+   +          +    GGV + ++     +  
Sbjct: 67  SRKSEEVNTPRALILTPTRELAEQLANTIGAYAKHLPFTIVAAYGGVKISKQAAKFSSDV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL + +     ++++++ VVLDEAD MLD+GF +D++ +L  + K R+ L+F
Sbjct: 127 DILIATPGRLLELVTQCHTHLANVEFVVLDEADRMLDMGFVNDVQTLLKGTAKNRQCLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  L+    K+ + + +   N     I++    +    +      +L  +   
Sbjct: 187 SATLSAGVNELSHKLLKNHLEIRVTKANSTADTIEHIVYPIEEKRKIALFNELLEEYNWY 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST+         L E+        G+ +Q  R  AL   +  + +V IAT+VAA
Sbjct: 247 QVLVFTSTKGQADSLLASLKENKIPAAICHGDKTQGARRRALADFKSAKIQVLIATEVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++  L    E+ +HR GR GRAG KG ++ ++ +  +R  + + R    
Sbjct: 307 RGLDIQGLEYVVNYNLPFLAEDYVHRIGRAGRAGNKGYAISLVSREEERNLDAIQRLIGQ 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            V        E +++R   R L + +  +   G + +    ++ K
Sbjct: 367 KVKRINRAGYE-VQQR---RALVEKIETEKRTGRKNRSSQTIIKK 407


>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
 gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
          Length = 539

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 231/450 (51%), Gaps = 14/450 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  +      + E   +   +  L+    ++    DE    +    K D  ++AA 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK---IERDFADETIRSNFDKFKGDAVQLAAE 411

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDR 445
           F    L ++   L   +  +   +   R++
Sbjct: 412 FTPEELALYILSLTVQDPDSLPEVEIAREK 441


>gi|242239842|ref|YP_002988023.1| DEAD/DEAH box helicase [Dickeya dadantii Ech703]
 gi|242131899|gb|ACS86201.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 452

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 190/383 (49%), Gaps = 8/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L  
Sbjct: 2   SFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +        AL + PTRELA Q+G  +        +   V  GGVS++ +   
Sbjct: 62  LLNDNPPQAKGRRPVRALILTPTRELAAQIGDNVTAYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D      +++S +  +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDILIATPGRLLDLEHQNAVDLSKVDILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +   N     +     LV    +   + +++ 
Sbjct: 182 QNLLFSATFSDEIKALAGKLLTNPASVEVVRRNTPSELVTQHVHLVDKKRKRELLSHLIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +A
Sbjct: 242 QNNWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGEIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP PS++A
Sbjct: 362 RLLKRDIPRVAIPGYEPDPSIKA 384


>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 487

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 211/374 (56%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 LRDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +     +  +  
Sbjct: 372 IEKLIKRPLEMQTL 385


>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
 gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
          Length = 495

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 211/374 (56%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 LRDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +     +  +  
Sbjct: 372 IEKLIKRPLEMQTL 385


>gi|254457480|ref|ZP_05070908.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
 gi|207086272|gb|EDZ63556.1| cold-shock deAd box protein a [Campylobacterales bacterium GD 1]
          Length = 531

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/447 (30%), Positives = 227/447 (50%), Gaps = 13/447 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   Q I  ++ + G+V  + +Q A +   L+ +D++  A TG+GKT AFGL   +
Sbjct: 19  TFDDLGLSQDILRSVKQAGFVTPSPIQAAAIPLILQGRDIVGQAHTGTGKTAAFGLPALN 78

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   N           L I PTRELA QV  EL               GG S +R+   
Sbjct: 79  NIDVRN-------GVEILVITPTRELATQVSDELFKYGRNINAKTVTVYGGSSYNRQIDL 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA +VV TPGRL D ++   +       VVLDEADEMLD+GF DDI  I    P KR
Sbjct: 132 IDRGASVVVATPGRLLDILKKGLVKNFTPSIVVLDEADEMLDMGFLDDINEIFSYLPTKR 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+    +   ++I      +SDI+    ++  S+RD+AI+ ++ 
Sbjct: 192 QTLLFSATMPKPIKLLAERILDNPEFISITKGETTNSDIEQLYYVIEESERDDAIIRLMD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K ++VFC T++ V R + VL+   +    L G++ Q++R   ++  +    +V +A
Sbjct: 252 SEDTKKSVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKSNSVKVLVA 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  V +  +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+ 
Sbjct: 312 TDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIK 371

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++   S+     PS   +RE   + +++       I  +  K++D L    D E++A   
Sbjct: 372 QKVGTSMGHAYVPSKNDLRESTVEALVKKVED-HKIYDEAHKVLDRLREDIDEEQMAYKL 430

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           + +    L   +   P ++    DR  
Sbjct: 431 ISML---LDQQDIKGPNNIGIPADRIE 454


>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 423

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 199/406 (49%), Gaps = 4/406 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL +   L+   
Sbjct: 13  LSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPIIQRLIETK 72

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           D   P    + AL + PTRELA QV   +      T + V V  GGVS+  +  +L+ GA
Sbjct: 73  DNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDIKVVVAYGGVSMKVQTDNLRGGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+  K + +S  + +VLDEAD MLD+GF  DI+ IL      R+ L F
Sbjct: 133 DILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNDVRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA    +    + +  +N     +      V  S +   +  ++     +
Sbjct: 193 SATFDNKIKALAHRMMQSPSEIQVTPKNSTADTVTQMVYPVDKSRKSELLAYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  LE V++ ++    E+ +HR GRTGRAG  G+++ ++ Q+       + R  + 
Sbjct: 313 RGIDIQQLEQVVNYDMPFKAEDYVHRIGRTGRAGNTGLAISLMSQDEAYLLGDIERLLDT 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +  E     E   E+D   I  D       +  EK+ +   L  H
Sbjct: 373 RLPQEWLEGFEPSLEKD---IAPDRGGRSKSRSSEKRKIKAKLKIH 415


>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 466

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 132/379 (34%), Positives = 209/379 (55%), Gaps = 5/379 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+SE+GY   T +Q   +   ++  D++  AQTG+GKT AF L L   LLAEN
Sbjct: 26  LNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLPLVHQLLAEN 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P  +  AL +APTRELA Q+  +++   A T +   V  GGV    + + L  G  
Sbjct: 86  -KQAPGRSCRALILAPTRELAAQIEEQVKAYTAHTKLTSTVVFGGVKAGPQIKALARGVD 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+  +   +   + V+LDEAD+MLDLGF   I  +L    ++R+ LMFS
Sbjct: 145 ILVATPGRLLDHLGERKARLDLTRFVILDEADQMLDLGFIPAIRKLLRMVGEERQTLMFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++PAI  LA ++      V +   ++    ID +      S + +A+++++     K 
Sbjct: 205 ATMAPAIRQLADDFLDHPETVAVTPPSKPVERIDQKVFYTEASAKPDALIDLMAPEAGKR 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+    R  K L ++  +  A+ G+ SQ +R+ AL   + G A V +ATD+AAR
Sbjct: 265 AIIFTRTKYGADRVAKRLVKYGHKANAIHGDKSQNQRTRALDAFKSGEAPVLVATDIAAR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  ++LV++ EL +  EN +HR GRT RAG  G +V +   + +   + + +   V+
Sbjct: 325 GIDVDGVDLVVNYELPNVAENYVHRIGRTARAGASGRAVALCAPDERVMLKDIEKTMGVT 384

Query: 367 VV----WEPAPSVEAIRER 381
           +       P P  EA + +
Sbjct: 385 IQGLNDAPPMPKGEAAKSK 403


>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
 gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
          Length = 761

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 249

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A+    L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 250 PRQ---AAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 306

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 307 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 366

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 367 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR 426

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 427 TFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 486

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 487 DVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 546

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +E++ V    A+ D    A   
Sbjct: 547 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEERE-VQQSEAQIDT---AQRL 602

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 603 LSKGKQTADQEPERSWFQTKEERKKEK 629


>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
           protein, putative [Candida dubliniensis CD36]
 gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
          Length = 499

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/404 (30%), Positives = 212/404 (52%), Gaps = 12/404 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F+  N+   + E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +
Sbjct: 85  FKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPI 144

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L      +       AL +APTRELA Q+    + L +  G+  +  +GG+ +  + 
Sbjct: 145 LQSLWHAQQPY------FALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQA 198

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    HI+V TPGR+ DH    KG ++ +LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 199 RDLMRKPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 258

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR   +FSAT++  I  L +    + V+V+++S+ +   ++    +LV    ++  +++
Sbjct: 259 IKRITYLFSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIH 318

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K+ IVF  T A   R   +     F  V L G+LSQ +R  +L   +  +A +
Sbjct: 319 LLNEFIGKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANI 378

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q       
Sbjct: 379 LVATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYL 438

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           R+       +  E  P  E +   DA  +  D    ++I+  ++
Sbjct: 439 RIENVLGKKLPKEDKPPKEIL---DALHVHVDKATAEAIRQTKE 479


>gi|182624967|ref|ZP_02952745.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
 gi|177909764|gb|EDT72182.1| ATP-dependent RNA helicase DbpA [Clostridium perfringens D str.
           JGS1721]
          Length = 453

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 138/543 (25%), Positives = 236/543 (43%), Gaps = 93/543 (17%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I +AL+  GY N + VQEA +   L+ +D++V +QTGSGKT +FG+ + 
Sbjct: 1   MKFNELNLSEDIIKALNNLGYKNPSEVQEASIPKLLKGEDIIVKSQTGSGKTASFGIPVC 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E  +         L + PTRELA+QV  EL  +     V  A   G    + + R
Sbjct: 61  EKINIEEKKV------QCLVLTPTRELAIQVKDELSNIGRIKKVRCAAIFGKQPFNEQIR 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+   HIVVGTPGR+ DH+    L++S +  VV+DEAD+ML +GF D I+ IL      
Sbjct: 115 ELKQRVHIVVGTPGRVFDHMERGTLDLSEVNYVVIDEADKMLSMGFIDQIKDILGELRLN 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   +FSAT S  I  + + Y ++ + + + S+      I+  A+ +   ++  ++  +L
Sbjct: 175 KTTALFSATFSKEIEEICEEYMRNPMLLEVKSKVFNRDRIEESAIEIEEKNKVKSVYKML 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G                              L G++ Q++R   ++  RD   +V +
Sbjct: 235 KDEGITCN-------------------------ELHGDMEQKKRIEVMENFRDKHFKVLV 269

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+AARGI +  +ELVI+ E+    E+ +HR GRTGRAGR+G ++  +    ++     
Sbjct: 270 CTDIAARGIHVDSIELVINYEVPMETESYVHRIGRTGRAGREGKAITFVNHYEKKY---- 325

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                          +E + E     I +  L  D    DE K    +  +    ++   
Sbjct: 326 ---------------LENVEEYIGYEIRKASLPSD----DEVKAGRKIFKESQKVQL--- 363

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                                             +     ++         ++ G K+K 
Sbjct: 364 ---------------------------------KESKKPKKEVHGDIVKIHVNGGKKKKI 390

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK--LDKGIQLKYLG 537
            A  ++       G+  + IG I VQ   ++V++     D + ++ K    KG ++K   
Sbjct: 391 RAFDIVGCFSNLPGLTGEDIGIIDVQDGFSYVDILNGKGDKVLKSFKEVTIKGKKVKIQK 450

Query: 538 GEK 540
             K
Sbjct: 451 ARK 453


>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
 gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
           WM1]
          Length = 471

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 196/386 (50%), Gaps = 9/386 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I +AL +  Y+  T +QE  +   L  +D+L  AQTG+GKT AF +     L  E
Sbjct: 7   NIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQLLREE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL + PTRELA+Q+          T +   V  GGVS   +   L+   
Sbjct: 67  KESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKLKQRV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL   I  K +NI H+K ++LDEAD MLD+GF  D++ I+  +P K++ L+F
Sbjct: 127 DILVATPGRLLALIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLKKQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA    K   ++ I   +     I      V  S++ + ++++L+ +   
Sbjct: 187 SATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVLKDNNIV 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  K L+ +     A+ G+ SQ  R +AL   ++   R+ IATD+AA
Sbjct: 247 SALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRILIATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+ +L   PE  +HR GRTGRAG  G ++     + + +   + R    
Sbjct: 307 RGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQLNDIERLIGK 366

Query: 366 SVVWEP---------APSVEAIRERD 382
            +              P ++A++ R 
Sbjct: 367 KITEIKDHPYPLKNNVPGIKAVQPRR 392


>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 200/368 (54%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI Q I +A+ E+GY   T +Q+  +   L  KD+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL  +   +      AL + PTRELA+Q+   L+     T V   V  GGV+   +  
Sbjct: 61  Q-LLQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVT 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G  I+V TPGRL D +    L++  +K  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 MLQKGIDILVATPGRLLDLMSQGFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+  +I TLA    K+ V++ I  E+     I+     V  +++   ++++L
Sbjct: 180 KQTLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    ++ +VF  T+ +  R  +VL +      A+ G  SQ  R +AL   + G+ RV +
Sbjct: 240 RKAENQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L LVI+ +L   PE  +HR GRTGRAG  G +     Q  ++  + +
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEERKLVDNI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|143361556|sp|Q5QMN3|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
          Length = 494

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 193/369 (52%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G  
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 216

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 217 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 276

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+       
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 337 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 397 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILE 456

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 457 EAGQKVSPE 465


>gi|307941598|ref|ZP_07656953.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307775206|gb|EFO34412.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 436

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 203/397 (51%), Gaps = 8/397 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     + +A+ E GY   T +Q+  +   L+  D+L  AQTG+GKT AFGL L
Sbjct: 1   MTEFKSLGLSDTLLKAIEEIGYDTPTPIQKNAIPLILKGNDLLGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A  LL E     P +A  AL +APTREL  Q+   L     KT + V   +GGVS++ + 
Sbjct: 61  AHRLLEEGRTPEPKAA-RALILAPTRELVNQIASNLTSFIRKTPLRVTSVVGGVSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +  K ++++    +VLDEAD+MLDLGF   +  I     +
Sbjct: 120 KRLGRGTDILVATPGRLLDLVDRKAVHLNKASYLVLDEADQMLDLGFIHALRRIAGLVAE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA+ Y     RV +A   +    +      +    +   +V++
Sbjct: 180 KRQTLLFSATMPRQIEDLARTYLHKPERVEVAPAGKTAERVAQSVHFMDQKAKSGFLVDM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        +VFC T+    R  K L        ++ G  SQ +R  A++ +R+G  +V 
Sbjct: 240 ICERADDTCLVFCRTKHGAERLMKRLVAAGVSAGSIHGNKSQNQRDRAIKGLREGTLKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + EL    E  +HR GRT RAG  G ++ +          +
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGASGDAISLCSAEEVALLRQ 359

Query: 359 LFREANVSVV----WEPAPSVEAIRERDAQRILQDPL 391
           + +   + +       PAP V+ +R+   QR  Q P 
Sbjct: 360 IEKLTGIEIEVASGEAPAP-VKLVRKGRNQRSGQRPA 395


>gi|114682559|ref|XP_001166388.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 3 [Pan
           troglodytes]
          Length = 791

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 460

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 461 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 580

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 581 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 636

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 637 LEKGKEAVVQEPERSWFQTKEERKKEK 663


>gi|209964678|ref|YP_002297593.1| DeaD [Rhodospirillum centenum SW]
 gi|209958144|gb|ACI98780.1| DeaD [Rhodospirillum centenum SW]
          Length = 528

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 211/468 (45%), Gaps = 6/468 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  +   + +A+SE GY   T +QE  +   L+ +DVL  AQTG+GKT +F L + 
Sbjct: 1   MQFSELGLGPEVLQAISEVGYTTPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R   A  P +L + PTRELA QV    E       + +A+ IGG S   + +
Sbjct: 61  EILAQGRAR---ARMPRSLILEPTRELAAQVADNFEIYGKYHKLNMALLIGGESFGDQVK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGR+ D      + +S +K +V+DEAD MLD+GF  DIE I+   PK 
Sbjct: 118 KLERGVDVLIATPGRMIDLFERGNILLSDIKILVIDEADRMLDMGFIPDIERIVGLLPKL 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+ P I  LA  +  +   + +A      + +     +    D+   + ++L
Sbjct: 178 RQTLFFSATMPPEIRRLADQFLMNPREITVAPPASPAATVTQALAVAYDEDKRKVLRHLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    KNA +FC+ +  V    + L+ H F   AL G++ Q +R+  L+  + G   + +
Sbjct: 238 QTEDVKNAFIFCNRKKDVGILHQSLSRHGFNAGALHGDMVQSKRTETLEAFKQGSIDLLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +DVAARGID+  +  V + ++  N E+ +HR GRTGRAG  G +  +      R  + +
Sbjct: 298 CSDVAARGIDIKGVSHVFNFDVPFNAEDYVHRIGRTGRAGLTGRAFTIAAPEDGRLVQAI 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +       +E       +            +G +++          P +  A 
Sbjct: 358 EKLIGREIPRVLIDGLETPELEFEESGRGRRRPRRKDEGRKEEGRKSEPRSARPPRSRAA 417

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 AG  A     P    +  +R     RA           +   
Sbjct: 418 --DRTEAGDSAAATPVPEERAARPERSERSVRARPERTDRPVQDRPER 463


>gi|91789374|ref|YP_550326.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91698599|gb|ABE45428.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 579

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 196/386 (50%), Gaps = 4/386 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELKLAPAILKAVLEQGYDTPTPIQAQAIPAVLAGSDLLGGAQTGTGKTAAFTLPMLQ 61

Query: 61  TLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L  E    +    +A  AL + PTRELA QV   +        +   V  GGV +  + 
Sbjct: 62  RLSTEPRLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYLDLTSMVMFGGVGMGAQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH     L++S ++ +VLDEAD MLD+GF  DI+ +L   PK
Sbjct: 122 DKLRRGVDILVATPGRLLDHAGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA    +D + + +   N     I      V  S +   + +I
Sbjct: 182 HKQSLLFSATFSDEIRELANGLLRDPLHIQVTPRNTTVQRITQTIHPVGRSKKKALLTHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H     +VF  T+   +   + L ++  + +AL G  SQ  R+ ALQ  +DG  R  
Sbjct: 242 INEHNWSQVLVFTRTKFGANNVAEHLTKNGIEAMALHGNKSQTARTQALQGFKDGTIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V ++  + +   + 
Sbjct: 302 VATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFMQD 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R    ++     P  EA     A+
Sbjct: 362 IERFTKQNIEKVLVPGFEAEPGERAE 387


>gi|158514834|sp|A3LS22|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 484

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/421 (29%), Positives = 211/421 (50%), Gaps = 16/421 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F  +     + EA+ +  +   T +Q   +   L  KD++  AQTGSGKT AF + +
Sbjct: 70  FSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPI 129

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L      +        L +AP RELA Q+    + L +  GV     +GG+ +  + 
Sbjct: 130 LQSLWEAQTPY------FGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQA 183

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    HI++ TPGR+ DH    KG ++  LK  V+DEAD++LDL F   ++ IL   P
Sbjct: 184 RDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIP 243

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR   +FSAT++  I  L +    + VRV ++S+ +   ++    +LV+   ++  +++
Sbjct: 244 SKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIH 303

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K+ I+F  TRA   R + +     F  V L G+L+Q +R  +L   + G A +
Sbjct: 304 LLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANI 363

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       
Sbjct: 364 LIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYL 423

Query: 358 RLFREANVSVVWEPAPSVEAIRERD-------AQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           R+ +     +  +P+P    +           A+ I Q   F +  +   +   D    +
Sbjct: 424 RIEQSIQKKLPKDPSPPKAMLDALHVHVDRAYAEAIRQTKEFHEKTRRGRRGKDDKDREE 483

Query: 411 H 411
           H
Sbjct: 484 H 484


>gi|189346086|ref|YP_001942615.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
 gi|189340233|gb|ACD89636.1| DEAD/DEAH box helicase domain protein [Chlorobium limicola DSM 245]
          Length = 418

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 198/371 (53%), Gaps = 4/371 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF + +   LL     
Sbjct: 10  EPILQAIEEEGYQTPTPIQAEAIPLILDGNDLLGCAQTGTGKTAAFAIPVLQ-LLNAVKT 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   +L I PTRELA+Q+G   +     TG+   V  GGV+ + +   LQ G  I+
Sbjct: 69  NEKKRKIRSLIITPTRELAIQIGESFKAYGRHTGLTSTVIFGGVNQNPQTASLQKGIDIL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +    L++ +++  VLDEAD MLD+GF  DI  IL   PKK++ L FSAT
Sbjct: 129 IATPGRLLDLMNQGHLHLRNIEFFVLDEADRMLDMGFIHDIRKILAELPKKKQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P IT LA +   + V V++   +     I+ +   V   +++N +V++L+    K A+
Sbjct: 189 MPPEITRLAASILHNPVEVSVTPVSSTVEIINQQIFFVDKGNKNNLLVHLLKNQDIKTAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K L +H     A+ G  +Q  R  AL   ++   RV +ATD+AARGI
Sbjct: 249 VFTRTKHGADKVVKYLLKHDITAAAIHGNKAQNARQRALTNFKEQTMRVLVATDIAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+ +LE VI+ ++S+  E  +HR GRTGRAG KG ++       +   R  E+L  +   
Sbjct: 309 DVDELEYVINFDMSNIAETYVHRIGRTGRAGAKGTAISFCDAEEKEYLRDVEKLIAKKIP 368

Query: 366 SVVWEPAPSVE 376
            V   P P ++
Sbjct: 369 VVESHPFPLID 379


>gi|228933771|ref|ZP_04096617.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825843|gb|EEM71630.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 451

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 487

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 210/370 (56%), Gaps = 4/370 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 LRDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 372 IEKLIKRPLE 381


>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
          Length = 509

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 210/370 (56%), Gaps = 4/370 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 94  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 274 LRDRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 334 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 393

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 394 IEKLIKRPLE 403


>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 533

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 132/421 (31%), Positives = 210/421 (49%), Gaps = 17/421 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ E GY   T +Q   + P L  KDVL  AQTG+GKT +F L + + L   
Sbjct: 8   NLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMITMLARG 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + + +  G 
Sbjct: 68  RAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLNLTKALLIGGVSFGEQDKLIDKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P  R+ L F
Sbjct: 125 DVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPFTRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---------AIV 236
           SAT++P I  +   +  + VR+ +A +     +I+   ++   S +D            +
Sbjct: 185 SATMAPEIERITNTFLSNPVRIEVARQATTGENIEQGVLMFKASRKDREATEKRKVLRAL 244

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+  R+G  R
Sbjct: 245 IDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFRNGDLR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +     ++  
Sbjct: 305 FLVASDVAARGLDVPSVSHVYNFDVPSHAEDYVHRIGRTGRAGRDGKAIMICVPRDEKNL 364

Query: 357 ERLFREANVSVVWEPAP-----SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           E + R     +     P       E  +E DA +    P   D+ + ++ K       K 
Sbjct: 365 EDVERLVQREIPRLDNPLGGDAPAETTKEADAPKAEDAPKAEDAPKTEKPKRSRTRSRKK 424

Query: 412 D 412
           D
Sbjct: 425 D 425


>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L        ++A  AL + PTRELA Q+   +        + V   +GGV +  +   L
Sbjct: 63  MLDNPSTTGRSNA-RALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         +    +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +AT
Sbjct: 242 KNWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQQLRRISIPGYE-VGSRDL 382


>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 530

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/490 (27%), Positives = 215/490 (43%), Gaps = 9/490 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 8   LSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMP 67

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 68  PLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 128 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 188 FSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 248 FQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +   
Sbjct: 308 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             V  E  P  E       + IL+           + +        +      A      
Sbjct: 368 RPVPQEVIPGFEPDPTAKPEPILRRGQGGGGRSPRQGQGQGAPKGGNGGAARGARGSSQG 427

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
                A              + +   +A K  G       G        G +     R  
Sbjct: 428 ANQGTAQGTAQRSGQRPTNGQQQPKPQAAKPQGAKPAGNGGQPR---RDGQRHDDRPR-- 482

Query: 485 MPMLCRSSGI 494
              +    G+
Sbjct: 483 --AIAHEGGV 490


>gi|292487709|ref|YP_003530582.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|292898944|ref|YP_003538313.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291198792|emb|CBJ45901.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553129|emb|CBA20174.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora
           CFBP1430]
 gi|312171822|emb|CBX80079.1| putative ATP-dependent RNA helicase rhlE [Erwinia amylovora ATCC
           BAA-2158]
          Length = 470

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N
Sbjct: 8   LNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQVGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +  +V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERVLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP P+++A
Sbjct: 368 IPRMAIDGFEPDPAIKA 384


>gi|213647600|ref|ZP_03377653.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 364

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 181/355 (50%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + +
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEK 362


>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 432

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/382 (32%), Positives = 196/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L        ++A  AL + PTRELA Q+   +        + V    GGV +  +   L
Sbjct: 63  MLDNPSTTGRSNA-RALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIIATPGRLLEHIIACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         +    +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQQLRRISIPGYE-VGSRDL 382


>gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 539

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 235/451 (52%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     D+I+ +  K       L A+  P
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKKIERDFADDAIRSNFDKFKGDAIQLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELALYILSLT---VQDPDSLPEVEIAREKP 442


>gi|312114880|ref|YP_004012476.1| DEAD/DEAH box helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220009|gb|ADP71377.1| DEAD/DEAH box helicase domain protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 405

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 198/378 (52%), Gaps = 3/378 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +  AL++  YV  T +QE  +   L+ +D+L  AQTG+GKT AF L L  
Sbjct: 5   TFEALGLAKPLLRALADENYVEPTPIQEKAIPHLLQGRDLLGLAQTGTGKTAAFALPLLQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D   P +A  AL + PTREL +Q+    +       +   V +GGVS+  + + 
Sbjct: 65  LLSERQDSPKPRTA-RALILVPTRELGLQIAASFKSYGHHLKLTSTVIMGGVSIGPQAKA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G   +V TPGRL DH+    +++      V+DEAD MLD+GF  D+  ++   P+KR
Sbjct: 124 LSRGVDFLVATPGRLLDHLGQGTVDLGQTSYFVIDEADRMLDMGFIRDVRKLMKVMPRKR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TLA++  KD V + I ++      ID R  LV   ++   +  +L 
Sbjct: 184 QSILFSATMPKEIATLAEDILKDPVHITIPAKTVAVERIDQRVHLVTTGNKPTMLAGLLD 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+ S +R  + L +      A+ G  SQ  R  AL+ +R G+ARV +A
Sbjct: 244 QPEFDRVIVFTRTKRSANRVAERLLQGGVPTEAIHGNKSQAARQKALENLRQGKARVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  +  VI+ EL ++PEN +HR GRT RAG  G+++     + +     + 
Sbjct: 304 TDILARGIDVDSISHVINYELPNDPENYVHRIGRTARAGSDGIAISFCDLSERASLRNIE 363

Query: 361 REANVSVVWEPAPSVEAI 378
           R    S+     P+   +
Sbjct: 364 RFLGRSLTQVNDPAPSKV 381


>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 477

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 197/375 (52%), Gaps = 5/375 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I  A+++ GY   T +Q   +   L   D+L +AQTG+GKT  F L + 
Sbjct: 5   TTFASLALAEPILRAIADAGYTAPTPIQAQAIPHVLAGGDLLAAAQTGTGKTAGFTLPIL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L            P  L + PTRELA QV   ++       +   V  GGV+++ + +
Sbjct: 65  HQLSTRAAVAPKPGRPRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFK 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+V TPGRL DH+  K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+
Sbjct: 125 ALKARVDILVATPGRLLDHVAQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLPKQ 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I TLA     +   V +A  N     ++     V  + + + + +++
Sbjct: 185 RQNLLFSATFSDEIRTLANGLLNNPKSVEVARRNTTAEVVEQSMHRVPQAHKRDLLAHLI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           ++H  +  +VF  T+   ++  + L +      A+ G  SQ  R+ AL   +DG  R  +
Sbjct: 245 KHHDWQQVLVFTRTKHGANKLAEKLNKDGITAAAIHGNKSQSARTKALASFKDGSVRALV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATD+AARGID+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++        R  
Sbjct: 305 ATDIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGSALSLVDDEEMGYLRDI 364

Query: 357 ERLFREANVSVVWEP 371
           E+L + A V V  EP
Sbjct: 365 EKLIKRAIVRVEIEP 379


>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 456

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 203/368 (55%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   I  A+ E+GY   T +Q   +   L  +D+L +AQTG+GKT AF L +   L    
Sbjct: 8   LSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILERLKKFA 67

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL ++PTRELA Q+            +   V  GG+++  + ++L+ G
Sbjct: 68  STSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQELRRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL DH+  K + ++ +  +VLDEAD MLD+GF +DI  IL   P+ R+ L+
Sbjct: 128 VEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPRTRQTLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +P I  LA+ +  D   V +A +N  ++ ++     V    +   + +++R    
Sbjct: 188 FSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHLIRERQM 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+ S  +  + L        A+ G+ +Q  R   L   ++G  +V +ATDVA
Sbjct: 248 GQVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVKVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ EL + PE+ +HR GRTGRAG  G+++ ++ Q+  ++ E + +   
Sbjct: 308 ARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDEGKQLEAIEKLTR 367

Query: 365 VSVVWEPA 372
            ++  +P 
Sbjct: 368 QTLKPQPV 375


>gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
           22836]
          Length = 374

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 2/375 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +AL E+GY   T +QE  + P L  +D+L  AQTG+GKT AF L + 
Sbjct: 1   MTFNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N          AL + PTRELA+Q+   L      TG+   V  GGV    +  
Sbjct: 61  QQL-YLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+V TPGRL D I    +N+  ++  VLDEAD MLD+GF  DI+ +L   PK+
Sbjct: 120 ELKTGIDILVATPGRLLDLINQGFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I +L+++  +D ++V +   +     I      V   ++ + ++N+L
Sbjct: 180 KQTLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQEKKDLLINLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ +VF  T+    +  ++L +      A+ G  SQ  R  AL   +  + RV I
Sbjct: 240 KKDKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRVLI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  LELVI+ +L   PE  +HR GRTGRAG  G ++             +
Sbjct: 300 ATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLNDI 359

Query: 360 FREANVSVVWEPAPS 374
            +     +     P+
Sbjct: 360 QKLTGKKLNQLSIPA 374


>gi|325983359|ref|YP_004295761.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325532878|gb|ADZ27599.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 457

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 197/378 (52%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E GY   T +Q+  +   +   DV+ SAQTG+GKT AF L    
Sbjct: 2   SFEKLNLHPSILKAIQEAGYTTPTPIQQQAVPELIAGHDVMASAQTGTGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
           TL       S    P  L + PTRELA+QV    +        +  V  +GG+    + +
Sbjct: 62  TLATPAQIRS--RGPRVLVLTPTRELALQVSEAAKKYGKYLPRINVVSILGGMPYPLQNK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+V TPGRL DHI+   ++   L+ +VLDEAD MLD+GF +D+E I  ++P  
Sbjct: 120 LLSQPVDILVATPGRLIDHIQRGRIDFKRLQMLVLDEADRMLDMGFIEDVETIAAATPAT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNI 238
           R+ L+FSAT+  AI  +A    K   R+ ++S   +  +I+ R      +S ++  + ++
Sbjct: 180 RQTLLFSATLDNAIDRVAAKLLKTPQRIQVSSPKSKLDNIEQRLHYADDMSHKNRLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    K AIVF +T+         L    +   AL G+++Q+ER+  L  +R+G  RV 
Sbjct: 240 LRDETLKQAIVFTATKRDADSLADTLYAQGYAAAALHGDMNQRERNRTLTRLRNGGLRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V            +
Sbjct: 300 VATDVAARGIDVADITHVINFDLPKFAEDYVHRIGRTGRAGAAGIAVSFASVKDSMHLTK 359

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P +E
Sbjct: 360 IERYTGQRIASHTIPGLE 377


>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 489

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 135/380 (35%), Positives = 207/380 (54%), Gaps = 4/380 (1%)

Query: 2   KIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+     +  A++E GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL  E+   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +
Sbjct: 63  QRLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA +Y +D + + +A  N   S ++         D+ +AI  
Sbjct: 183 KQRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQHFYSANDDDKRHAIHQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+  G K A +F +++   +R  + L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 VLKSRGIKQAFIFVNSKLGCARLARSLEREGLKTAALHGDKSQDERLKALDAFKQGAVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLVA 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +     +  E     E 
Sbjct: 363 DIEKLLKKKIDIEALEYDED 382


>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
 gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
          Length = 511

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/378 (36%), Positives = 212/378 (56%), Gaps = 2/378 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL + 
Sbjct: 40  LAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPQA 99

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G
Sbjct: 100 NTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQMAELRRG 159

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK+R+ L+
Sbjct: 160 VEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQTLL 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +LR  G 
Sbjct: 220 FSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQLLRERGL 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     +ATDVA
Sbjct: 280 KQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEVEALVATDVA 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   + +   
Sbjct: 340 ARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLIK 399

Query: 365 VSVVWEPAPSVEAIRERD 382
             +  +     +  R R 
Sbjct: 400 RPLEVQTLTLDKPARHRH 417


>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase domain-containing protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
           DS-1]
          Length = 448

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 199/368 (54%), Gaps = 3/368 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  AL+   Y N T +Q   +   L  +D+L  AQTG+GKT AF L +  
Sbjct: 5   TFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A N++  P  A  AL +APTRELAVQ+ + +E       +   V  GGV+  R+ + 
Sbjct: 65  ILAAANEKRQPKEA-RALILAPTRELAVQISQSIESYGKNFKLRHTVIFGGVNQFRQVKA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G  IVV TPGRL D +  K +N+S    +VLDEAD MLD+GF  D+  I+ + P++R
Sbjct: 124 MTAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRMLDMGFIRDVRKIIAAMPRQR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  +I  LA    ++ VRV +  E      ID R + V    +   +  +L 
Sbjct: 184 QSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKRKRELLAKLLD 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+   +R ++ L +      A+ G  SQ  R  AL M R+G+ARV +A
Sbjct: 244 NSELSRVIVFTRTKHCANRVSEQLDKSGVLSEAIHGNKSQGARQRALDMFRNGKARVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ D+  VI+ EL + PE+ +HR GRT RAG+ G+++     + +     + 
Sbjct: 304 TDIAARGIDVSDITHVINYELPNEPESYVHRIGRTARAGKSGIALSFCDASERSHLRSIE 363

Query: 361 REANVSVV 368
           +     + 
Sbjct: 364 KLTKRPLT 371


>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/391 (35%), Positives = 216/391 (55%), Gaps = 5/391 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   I  AL+++GY + T +Q A +   L+ +DV+ +AQTG+GKT  F L +   
Sbjct: 18  FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77

Query: 62  LLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LLA  ++  SPA  P+ AL + PTRELA QV   ++     T +   V  GG+ +  +  
Sbjct: 78  LLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGMDMAPQTA 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV+ TPGRL DH++ K LN+S  + +V+DEAD MLD+GF  D++ I++  PKK
Sbjct: 138 ALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKK 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
           R+ LMFSAT S  I  LA ++  + V + +A  N+    +      + +   + + + ++
Sbjct: 198 RQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSDDAKRDIVAHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  +VF +T+   SR  + L +   +  A+ G+ +Q ER  AL+  + G   V 
Sbjct: 258 IRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAALEAFKGGEIDVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ DL  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R    
Sbjct: 318 VATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLLLD 377

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           + +  N   V           ER  +R  +D
Sbjct: 378 IEKLINHKFVPAELVGYTPPVERAERRPRRD 408


>gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
          Length = 523

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|91775611|ref|YP_545367.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709598|gb|ABE49526.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 456

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 5/377 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     I  AL+E GY   T +Q   +   L   D++ SAQTG+GKT AF L   +
Sbjct: 2   SFENLNLHPAILRALTEAGYSTPTPIQAQAIPEVLEGHDLMASAQTGTGKTAAFTLPALN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       + +  P  L + PTRELA QV                  +GG+    + + 
Sbjct: 62  LLAT--PHPAKSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  DIE I  + P +R
Sbjct: 120 LSQPIDILVATPGRLLDHMERGRIDMSRLQMLILDEADRMLDMGFMPDIERISSALPSER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           + LMFSAT    I  +AK   K    + IA++  +H++I+ +   +  ++ ++  + ++L
Sbjct: 180 QTLMFSATFEGQIANIAKTLLKTPKVIQIAAQKEKHANIEQKLLFVDDMAHKNKLLEHLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G   AIVF ST+       + L     +  AL G+++Q  R+  L  +R G  RV +
Sbjct: 240 IAPGVNQAIVFTSTKRHADLLAEDLYAAGHKSAALHGDMTQGARNRTLTKLRHGDVRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G+++       + +  ++
Sbjct: 300 ATDVAARGIDVQGITHVINYDLPKFAEDYVHRIGRTGRAGNTGVALSFASHMDRHQLRKI 359

Query: 360 FREANVSVVWEPAPSVE 376
            +     +       +E
Sbjct: 360 EQYTGQRLEISVIEGLE 376


>gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
          Length = 523

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
 gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
           J2315]
          Length = 494

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 135/384 (35%), Positives = 213/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKQAAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 252 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +     +  R R 
Sbjct: 372 IEKLIKRPLEMQTLKLDKPARHRH 395


>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 382

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 128/362 (35%), Positives = 187/362 (51%), Gaps = 1/362 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI   I +AL   GY   T +QE  +   L+ +D+L  AQTG+GKT AF + L 
Sbjct: 1   MKFEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E           AL +APTRELA+Q G  L       G+   V  GGVS   + R
Sbjct: 61  QILSRERINERAPRTIRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTR 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGRL D +    + + H+K +VLDEAD MLD+GF  D++ IL   P  
Sbjct: 121 AMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAA 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT+ P +  +A     + V++ +A  +     ID     V  S +   ++ +L
Sbjct: 181 KQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIELL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R     +A+VF  T+       + L +   +  A+ G  SQ  R  AL   +  R RV +
Sbjct: 241 RNQSVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  VI+ +L + PE  +HR GRTGRAG  G ++       +     +
Sbjct: 301 ATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYLRDI 360

Query: 360 FR 361
            +
Sbjct: 361 QK 362


>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 429

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 191/376 (50%), Gaps = 4/376 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+     + +A+ ++GY   + +QE  + P L  KDVL SAQTG+GKT  F L L  
Sbjct: 2   TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +        AL + PTRELA Q+   ++       +  AV  GGV+   +  +
Sbjct: 62  LL--SEQKALRHRPVRALILTPTRELAAQIFANVKEYSEFLDLRSAVIFGGVNQKPQIAN 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D    + L++  ++  VLDEAD MLD+GF  DIE ++   P KR
Sbjct: 120 LKRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRMLDMGFLRDIERVMKLIPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I  LA     + ++V    EN     I  +   VA   +   I+ ++ 
Sbjct: 180 QNLMFSATFSKDIKKLAHGILNNPIQVEATPENTAVEVIKQKVYRVAKGKKTGLIIKLIS 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +   K ++       A+ G  SQ  R+ AL   + G  RV +A
Sbjct: 240 DGNWQQVLVFTRTKHGANNLCKKMSSKGISAAAIHGNKSQGARTKALDGFKKGTLRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P L  VI+ E+ +  E+ +HR GRTGRAG  G +V ++  +     + + 
Sbjct: 300 TDIAARGLDIPLLPHVINYEIPNISEDYVHRIGRTGRAGASGEAVSLVSADETTYLKDIQ 359

Query: 361 REANVSVVWEPAPSVE 376
           +   + +  E     E
Sbjct: 360 KLIGMQIPVEIVEGFE 375


>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/477 (29%), Positives = 225/477 (47%), Gaps = 14/477 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +  A+   GYVN T +Q A +   L  +DVL  AQTG+GKT +F L + 
Sbjct: 4   KTFADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R   A  P +L +APTRELA QV +  E       + VA+ IGGVS+  + +
Sbjct: 64  TRLETGRAR---ARMPRSLILAPTRELAAQVAQSFEKYGTNHKLSVALLIGGVSMDDQVK 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRL DH     + +  ++ +V+DEAD MLD+GF  DIE I    P +
Sbjct: 121 KLDRGVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRMLDMGFIPDIEKICKLLPPR 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIV 236
           R+ L FSAT+ P IT L   + KD  R+ +A        I  R V         +   + 
Sbjct: 181 RQTLFFSATMPPEITRLVDQFLKDPTRIEVAKPATTAKTITQRFVYCQNGEDWAKREMLR 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++R    KNAI+FC+ +  V+   K L++H F    L G++ Q  R+  L   R+G   
Sbjct: 241 ELIRDGNVKNAIIFCNRKRDVAVLYKSLSKHGFNAGELHGDMDQTSRTETLDKFRNGEIM 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  A+DVAARG+D+PD+  V + +L    ++ +HR GRTGRAGR+G S  ++  +  +  
Sbjct: 301 LLAASDVAARGLDIPDVSHVFNFDLPWAADDYVHRIGRTGRAGREGHSASLVSPDDLKFV 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             + +    + +W   P  E       +R               +        K +P K+
Sbjct: 361 ADIEKVTGETAIWLGDPPSEEDIAGAGKRRRGRGGRGAPQAKSGRPHGSRDARKPEPRKV 420

Query: 417 AAGFLRIHR------AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +  +      A    P+  +P    + R+R R + +        R   +  +
Sbjct: 421 NGAPQQREQHGGEQEAKAERPQAASPAPQQAKRERPRANEQQPPRDKPQRTAQRPRA 477


>gi|307130576|ref|YP_003882592.1| putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528105|gb|ADM98035.1| Putative ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 454

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 192/383 (50%), Gaps = 8/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L  
Sbjct: 2   SFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +        AL + PTRELA Q+G  ++       +   V  GGVS++ +   
Sbjct: 62  LLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D      +++SH++ +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +   N     +      V    +   + +++ 
Sbjct: 182 QNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +A
Sbjct: 242 KHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP P+++A
Sbjct: 362 RLLKREIPRMEIAGYEPDPTIKA 384


>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
           parvum NCIB 8327]
 gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
           8327]
          Length = 427

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 192/368 (52%), Gaps = 4/368 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +AL E GY + T +Q   +   L   D+L  AQTG+GKT AF L +   LL ++  
Sbjct: 10  DPLLKALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPILQ-LLHQDQE 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA+Q+G   E     TG+   V  GGV+ + + R L  G  I+
Sbjct: 69  HGRKRKIRCLVLTPTRELALQIGESFEAYGRHTGLKSTVIFGGVNQNPQTRTLAGGVDIL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  + L++  ++  VLDEAD MLD+GF  D++ +L + PKK++ L FSAT
Sbjct: 129 VATPGRLLDLMGQEHLHLRDIEYFVLDEADRMLDMGFIHDVKKVLAALPKKKQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + PAI  LA +      +V +   +     I+   + V   ++++ + ++L+     + +
Sbjct: 189 MPPAIVNLAASILHQPKKVTVTPVSSTAEIINQHILFVDRENKNSLLEHLLQNRDISSVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            F  T+    +  K L     +  A+ G  SQ  R  AL   + G  RV +ATD+AARGI
Sbjct: 249 AFTRTKHGADKVAKFLTRKNIKAEAIHGNKSQNARQRALGNFKSGETRVLVATDIAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+ DLE VI+ +L +  E  +HR GRTGRAG +G +        +   R  E+L  ++  
Sbjct: 309 DVDDLEYVINIDLPNVAETYVHRIGRTGRAGNRGTAYSFCNAEEKEYLRDIEKLIDKSIT 368

Query: 366 SVVWEPAP 373
            +   P P
Sbjct: 369 VIDNHPYP 376


>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 508

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 207/368 (56%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   I +A+ E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +   LL   
Sbjct: 49  LAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQRLLPLA 108

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ +  +L+ G
Sbjct: 109 STSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAVVFGGVDMNPQTAELRRG 168

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL DH++ K  +++ ++ +VLDEAD MLD+GF  D++ IL+  P +R+ L+
Sbjct: 169 VEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQRQTLL 228

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA  Y +D V + +A  N   S++      VA  D+  A+V ++R    
Sbjct: 229 FSATFSAEIKKLASTYLRDPVTIEVARSNSTASNVRQIVFEVAEPDKQAAVVQLIRQREL 288

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVFC+++   SR  K L        A+ G+ SQ ER  AL   + G     +ATDVA
Sbjct: 289 KQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEIEALVATDVA 348

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   + +   
Sbjct: 349 ARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFSGNERKQLADIEKLIK 408

Query: 365 VSVVWEPA 372
            ++  EP 
Sbjct: 409 RALTIEPL 416


>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 398

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 8/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   T +Q+  +   L +KD+L  AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLELL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+ S      AL + PTRELA QVG  +            +  GGVS++ +   L+ G  
Sbjct: 66  DKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL DH+  K +++  ++ +VLDEAD MLD+GF +DI+ +L   PK ++ L+FS
Sbjct: 126 IVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  L+       V + +   N+    I      V    +   +V++++    + 
Sbjct: 186 ATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKEGKWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ +  L +      A+ G  SQ  R  ALQ  +DG  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++  +       + +     
Sbjct: 306 GIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEKLIKTD 365

Query: 367 VV------WEPAPSVEA 377
           +       ++P PS++A
Sbjct: 366 IQKVWLKDFKPDPSIKA 382


>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 493

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 209/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 252 IRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +          +R    +R
Sbjct: 372 IEKLIKRPLEVLRLTVDTPVRHHHEER 398


>gi|29427914|sp|Q921N6|DDX27_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
          Length = 760

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 190 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 249

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A+    L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 250 PRQ---AAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 306

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD+MLD  F + ++ I+      R+ ++
Sbjct: 307 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTML 366

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 367 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR 426

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 427 TFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 486

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 487 DVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 546

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M             A   
Sbjct: 547 AAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQ----IDTAQRL 602

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 603 LAKGKETADQEPERSWFQTKEERKKEK 629


>gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
          Length = 523

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
 gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
 gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
          Length = 523

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
 gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
          Length = 523

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 234/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L+A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGRDARKLVAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|260943624|ref|XP_002616110.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238849759|gb|EEQ39223.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 477

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 211/423 (49%), Gaps = 20/423 (4%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           K FE+  ++     + EA+    +   T +Q   +   L  KDV+  A TGSGKT AF +
Sbjct: 62  KRFESFTELKLIPELLEAIQSMKFTKPTPIQAEAIPHALEGKDVIGLAVTGSGKTAAFAI 121

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +  +L  +   +        L ++PTRELA Q+    + L +  G+     +GG+ +  
Sbjct: 122 PILQSLWHDQLPY------YCLVLSPTRELAYQIKDTFDALGSGMGLRACCIVGGMDMMD 175

Query: 117 ERRDLQNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    H IV      +      KG ++ +LK +V+DEAD +LDL F  +++ IL  
Sbjct: 176 QARDLMRKPHVIVATPGRIVDHLEHTKGFSLKNLKYLVMDEADRLLDLDFGPELDKILRV 235

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R   +FSAT++  I  L +    + VR+ ++S+ +   ++    +LV+   ++  +
Sbjct: 236 IPRERNTYLFSATMTNKIEKLQRASLNNPVRIAVSSKYQTADNLVQSMMLVSDGYKNTYL 295

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V++L     K+ I+F  T A   R   +     F  V L G+LSQ +R  +L   + G+A
Sbjct: 296 VHLLNEFVGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLSQSQRLGSLNKFKSGKA 355

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q     
Sbjct: 356 NILVATDVAARGLDIPAVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLVTQYDLEM 415

Query: 356 AERLFREANVSVVWEPAPSVEA-------IRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
             R+       +  +PAP  +        +    A+ I Q   F +  +G +K   D   
Sbjct: 416 YLRIEAVLQKKLPKDPAPPKDVLDALHVHVDRATAEAIKQTKDFHEK-KGKKKSRDDADR 474

Query: 409 AKH 411
            + 
Sbjct: 475 EER 477


>gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
          Length = 523

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+   +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSSFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|94309401|ref|YP_582611.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
          Length = 540

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 209/470 (44%), Gaps = 29/470 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L + 
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 60  STLLAENDRFSPASAPL-------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
             L     R +  +AP        AL + PTRELA QV   +        +   V  GGV
Sbjct: 61  QLLSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGV 120

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            ++ +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  +
Sbjct: 121 GINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADRMLDMGFIHDIRKV 180

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L+  P KR+ L+FSAT S  I  LA     +   + +A  N     +  R   V    + 
Sbjct: 181 LNVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKR 240

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + +++R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + 
Sbjct: 241 ELLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFKA 300

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  R+ +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  + 
Sbjct: 301 GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE 360

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                 + R     +     P  E          +   +  + IQ   ++          
Sbjct: 361 HGLLRDIERLIKRQIEQVLLPGFE----------VDPSIKAEPIQKGRQQQRGGQPRG-- 408

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                              E   P +    R       R  +   G   N
Sbjct: 409 ---------NGQGNAGNGGERRQPRAAQGERQEAPRQPRPAQPARGEARN 449


>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 486

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 206/381 (54%), Gaps = 5/381 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY  +T +QE  +   L  +DV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  ST-LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L  EN   SPA  P+ AL + PTRELA QV ++++     T +   V  GG+ +  +
Sbjct: 63  QRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA +Y ++ V + +A  N   S ++     V   D+  A+  
Sbjct: 183 KQRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVTDDDKRRALKQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I++  G   A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 IVKQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRA 356
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V      N  R  
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLV 362

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             + +     +  EP    E 
Sbjct: 363 ADIEKLIKKKIELEPVEFEED 383


>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
 gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
           51100]
          Length = 524

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 229/430 (53%), Gaps = 13/430 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++H++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLLII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     ++R A + ++     +SI+ +  K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKRVALKKIERDFADESIRSNFDKFSKDARKLAAEFSP 414

Query: 414 EKIAAGFLRI 423
           E++A   L +
Sbjct: 415 EELAMYILSL 424


>gi|294139294|ref|YP_003555272.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 478

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 192/366 (52%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  
Sbjct: 68  R--AQAKKVRALVLTPTRELAAQVAESVETYGKYLPLKSAVIFGGVGIGPQISKLGKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +N + L+ ++LDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++    +V    +  A++++++ +  K 
Sbjct: 186 ATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L  +     A+ G  SQ  R+ AL   ++G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +    + R    +
Sbjct: 306 GIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIERLIKQN 365

Query: 367 VVWEPA 372
           +  +  
Sbjct: 366 IPRKEV 371


>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 520

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 138/386 (35%), Positives = 212/386 (54%), Gaps = 3/386 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   +  A++E GY  +T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  E
Sbjct: 29  LADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQRLMKHE 88

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV ++++     T +  AV  GG+ +  +  +L+ G
Sbjct: 89  NASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSAVVFGGMDMKPQTLELKAG 148

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+
Sbjct: 149 VEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKTRTTLL 208

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y ++ + + +A  N   S ++     V   D+ +A++ I+R    
Sbjct: 209 FSATFSPEIKRLANSYLQNPITIEVARSNATASTVEQHFYRVNDDDKRHALLQIVRSKDI 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A VF +++   +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVA
Sbjct: 269 KQAFVFVNSKLGCARLTRALERDGLRAAALHGDKSQDERLKALEAFKKGEVDLLVCTDVA 328

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREA 363
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +   N  R    + +  
Sbjct: 329 ARGLDIKDVPAVFNMDIPFNAEDYVHRIGRTGRAGASGLAVSFVGGGNDARLVADIEKLI 388

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
              +  E     E   +  +Q  + D
Sbjct: 389 KTKIELEAVEFDEDRPDIRSQGRIND 414


>gi|187935259|ref|YP_001885538.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723412|gb|ACD24633.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 480

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 7/377 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +   + +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   + 
Sbjct: 8   FE-LSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIPLCEKID 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++      P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+ 
Sbjct: 67  WDENK------PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVGTPGR+ DHI    L++S     V+DEADEML++GF   +E I+   PKKR  L
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKTNYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   I  L   +    + + I S+N    ++ + A  V  + + + + NIL    
Sbjct: 181 LFSATIPEEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEM 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + ++VFC T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+
Sbjct: 241 PETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDI 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+  +  VI+ ++    E  +HR GRTGRAG KG+++     +  R    +    
Sbjct: 301 ASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYI 360

Query: 364 NVSVVWEPAPSVEAIRE 380
              +  +  PS E I +
Sbjct: 361 GFKLEVKNLPSKEEIIK 377



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-- 528
           L+ G K+K  A  ++  + +  G+  + IG I VQ   ++V++       +   +K    
Sbjct: 409 LNGGKKKKIRAGDIVGAVTKIPGVTGEDIGIIDVQDLASYVDILNGKGKAVINGLKTATI 468

Query: 529 KGIQLK 534
           KG +LK
Sbjct: 469 KGKKLK 474


>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
 gi|29427946|sp|Q96GQ7|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
           Full=DEAD box protein 27
 gi|55663788|emb|CAH70236.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|56203613|emb|CAI22427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
           sapiens]
 gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
 gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 796

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 460

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 461 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 580

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 581 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 636

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 637 LEKGKEAVVQEPERSWFQTKEERKKEK 663


>gi|188534378|ref|YP_001908175.1| ATP-dependent RNA helicase RhlE [Erwinia tasmaniensis Et1/99]
 gi|188029420|emb|CAO97297.1| Putative ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 468

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L + N
Sbjct: 8   LNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLLQLLSSHN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  PHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDMRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +  +V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKTLAEKLLHNPEQVEVARRNTASEQVTQHVHLVDKKRKRELLSLLIGRGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKEGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GIDIEELPHVVNYELPNVSEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAVEGFEPDPSIKA 384


>gi|330899330|gb|EGH30749.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 629

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    +        + D F+   
Sbjct: 428 EKP---AAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDDE 481


>gi|73540602|ref|YP_295122.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 537

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 139/393 (35%), Positives = 211/393 (53%), Gaps = 12/393 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE+  +   I  ALSE+GY   T +Q   +   L  KDV+ +AQTG+GKT  F L + 
Sbjct: 54  QTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPII 113

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL   +   SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ +
Sbjct: 114 QRLLPMASASASPARHPVRALMLTPTRELADQVYDNVARYAKHTDLRSTVVFGGVDMNPQ 173

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  D++ I++  P
Sbjct: 174 TDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLP 233

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT SP I  LA +Y K  V + +A  N  + ++      V    +  A+V+
Sbjct: 234 AQRQTLLFSATFSPEIKRLAASYLKQPVTIEVARSNSTNENVRQMVYQVEDGQKQAAVVH 293

Query: 238 ILRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +LR        K  IVF +++   SR  + L        A+ G+ +Q ER   L+  ++G
Sbjct: 294 LLRQRAEQGLSKQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFKNG 353

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                +ATDVAARG+D+ D+  VI+ +L  + E+ +HR GRTGRAG  G ++ +     +
Sbjct: 354 TIDALVATDVAARGLDIADMPCVINFDLPFSAEDYVHRIGRTGRAGASGDALSIFVPGDE 413

Query: 354 RRAERLFREANVSVVWEPA----PSVEAIRERD 382
           R    + +    SV         P+ E  R+ D
Sbjct: 414 RLLTDIEKLIKRSVPRGTLEGFDPTGEKARQED 446


>gi|66043725|ref|YP_233566.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
 gi|63254432|gb|AAY35528.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 629

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    +        + D F+   
Sbjct: 428 EKP---AAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDDE 481


>gi|251778643|ref|ZP_04821563.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082958|gb|EES48848.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 480

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 201/375 (53%), Gaps = 7/375 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +   + +A+   GY   + VQE  +   LR KD++V +QTGSGKT +FG+ L   + 
Sbjct: 8   FE-LSGELLKAIDNLGYKTPSEVQEKAIPEVLRNKDLVVKSQTGSGKTASFGIPLCEKID 66

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            + ++      P  L +APTRELAVQ+  ++  +     +      G  S+  + R L+ 
Sbjct: 67  WDENK------PQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVGTPGR+ DHI    L++S +   V+DEADEML++GF   +E I+   PKKR  L
Sbjct: 121 KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL 180

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   I  L   +    + + I S+N    ++ + A  V  + + +++ NIL    
Sbjct: 181 LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDSLNNILISEM 240

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + ++VFC T+ +V    + L +  +    + G + Q++R + ++  R G  R+ +ATD+
Sbjct: 241 PETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDI 300

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+  +  VI+ ++    E  +HR GRTGRAG KG+++     +  R    +    
Sbjct: 301 ASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYI 360

Query: 364 NVSVVWEPAPSVEAI 378
              +  +  PS E I
Sbjct: 361 GFKLEVKNLPSKEEI 375



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD-- 528
           L+ G K+K  A  ++  + +  G+  + IG I VQ   ++V++       +   +K    
Sbjct: 409 LNGGKKKKIRAGDIVGAVTKIPGVTGEDIGIIDVQDIASYVDILNGKGKTVINGLKTATI 468

Query: 529 KGIQLK 534
           KG +LK
Sbjct: 469 KGKKLK 474


>gi|15221998|ref|NP_175911.1| DEAD box RNA helicase, putative (RH20) [Arabidopsis thaliana]
 gi|75333448|sp|Q9C718|RH20_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 20
 gi|12321578|gb|AAG50841.1|AC073944_8 ethylene-responsive RNA helicase, putative [Arabidopsis thaliana]
 gi|17065338|gb|AAL32823.1| Unknown protein [Arabidopsis thaliana]
 gi|22136216|gb|AAM91186.1| unknown protein [Arabidopsis thaliana]
 gi|332195071|gb|AEE33192.1| DEAD-box ATP-dependent RNA helicase 20 [Arabidopsis thaliana]
          Length = 501

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 121/402 (30%), Positives = 200/402 (49%), Gaps = 18/402 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + E + + G+   T +Q       ++ +D++  A+TGSGKT+++ L  
Sbjct: 98  VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +    P+ L +APTRELAVQ+ +E     + + +      GGV    + 
Sbjct: 158 IVHVNAQ-PMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQV 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 217 RDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  L+K +  +  +V I S + + +  I     +++ S + N +V 
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVK 336

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +          +VF  T+    + T+ L    +  +++ G+ SQ ER   L   R G++ 
Sbjct: 337 LLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A
Sbjct: 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFA 456

Query: 357 ER---LFREANVSVVWE----------PAPSVEAIRERDAQR 385
           +    + +EA   V  E          P P +   R+R ++R
Sbjct: 457 KELTNILQEAGQKVSPELASMGRSTAPPPPGLGGFRDRGSRR 498


>gi|82702922|ref|YP_412488.1| DEAD/DEAH box helicase-like [Nitrosospira multiformis ATCC 25196]
 gi|82410987|gb|ABB75096.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 128/378 (33%), Positives = 199/378 (52%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+  +I +A+++ GY + T +QE  +   L   DVL SAQTG+GKT AF L    
Sbjct: 2   SFESLNLHPLILKAINDAGYTSPTPIQEQAIPELLTGHDVLASAQTGTGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L   +     +  P  L + PTRELA+QV                V  +GG+    + +
Sbjct: 62  RL--ASPSQVRSRGPRVLVLTPTRELALQVSEATAKYGKYLPRAKVVSILGGMPYPLQNK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+V TPGRL DHI+   ++ S L+ +VLDEAD MLD+GF +D+E I  ++P  
Sbjct: 120 LLSQVVDILVATPGRLIDHIQRGRIDFSRLEMLVLDEADRMLDMGFIEDVERIASATPAT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
           R+ L+FSAT+  A+  +A        R+ +A+   + ++I+ R   +  +S ++  + ++
Sbjct: 180 RQTLLFSATLDSAMDNVAARLLNSPKRIQVATSKARLNNIEQRLHYVDDISHKNQLLDHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    K AIVF +T+         L+       AL G++SQ++R+  L  +R G  RV 
Sbjct: 240 LRDIELKQAIVFTATKRDADMLADGLSAQGHAAAALHGDMSQRDRNRTLIKLRQGGIRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG  G++V           ++
Sbjct: 300 VATDVAARGIDVAGITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASSKDGIHLKK 359

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P +E
Sbjct: 360 IERFTGQRIASHVVPGLE 377


>gi|323497187|ref|ZP_08102207.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317762|gb|EGA70753.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 419

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 129/394 (32%), Positives = 198/394 (50%), Gaps = 9/394 (2%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   FE++   Q +   L+  G+   T VQ+  +   L  KDVL  AQTG+GKT AFGL 
Sbjct: 1   MSTEFESLGLSQPLLTTLNTLGFTTPTQVQQQSIPHILLGKDVLAGAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           +   L+       P  +   AL + PTRELA QV   L      T + +    GG S++ 
Sbjct: 61  IIQQLIQSESVRDPQGNDVRALVLVPTRELAQQVYDNLVQYAESTPLKIVTAYGGTSINV 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L  G  I++ TPGRL DH+  K ++++  + +VLDEAD MLD+GF  DI+ IL   
Sbjct: 121 QTRNLHQGCDILIVTPGRLIDHMFCKNVSLAKTEYLVLDEADRMLDMGFMPDIQRILKRF 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L FSAT    I  +A   QKD + + ++  N     +      V    +   + 
Sbjct: 181 NPERQTLFFSATFDKRIKNIAYKLQKDPIEIQVSPSNSTAETVKQMVYPVDKKRKAELLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     +  +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGKVR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IATDVAARG+D+  LE V++ ++    E+ +HR GRTGRAG++G +V ++ Q+     
Sbjct: 301 ALIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSQDEHYLL 360

Query: 357 ERLFREANVSVVWEPA----PS-VEAIRERDAQR 385
           E + R  +  +  E      PS VE +      R
Sbjct: 361 EAIERLLDTRLPQEWLQGFEPSLVEDVTPERTPR 394


>gi|302186251|ref|ZP_07262924.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Pseudomonas
           syringae pv. syringae 642]
          Length = 629

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    +        + D F+   
Sbjct: 428 EKP---AAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDDE 481


>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/397 (35%), Positives = 221/397 (55%), Gaps = 5/397 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    +  A+ + GY+ +T +Q   +   L  +DV+ +AQTG+GKT AF L L   
Sbjct: 17  FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +L  EN   SPA  P+ AL +APTRELA QV   ++     + + V    GG+ +  +  
Sbjct: 77  MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQTA 136

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  +++ TPGRL DHI+ K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK 
Sbjct: 137 ELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKT 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT SP I  LA++Y +D + V +A  N   ++++ R   V   D+   +++IL
Sbjct: 197 RQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVLHIL 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R      AIVF +++   +R  +       +  AL G+ SQ ER  AL   + G   V +
Sbjct: 257 RERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVDVLV 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ DL  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    +
Sbjct: 317 ATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVSDI 376

Query: 360 FREANVSVVWEPAP-SVEAIRERDAQRILQDPLFLDS 395
            +     +  E    + E  R    + I+ D   +D+
Sbjct: 377 EQLIKKKIEIEAIELNDERPRRPPRREIVDDVAVVDA 413


>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 496

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/381 (35%), Positives = 207/381 (54%), Gaps = 5/381 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY  +T +QE  +   L  +DV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  ST-LLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L  EN   SPA  P+ AL + PTRELA QV ++++     T +   V  GG+ +  +
Sbjct: 63  QRMLKHENASTSPARHPVRALVLLPTRELADQVAQQVKLYAKYTNLRSTVVFGGIDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA +Y ++ V + +A  N   S ++     V+  D+  A+  
Sbjct: 183 KQRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQHFYSVSDDDKRRALKQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I++  G   A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   +
Sbjct: 243 IVKQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRA 356
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V      N  R  
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDARLV 362

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             + +     +  EP    E 
Sbjct: 363 ADIEKLIKKKIELEPVEFEED 383


>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 209/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +       +R     R
Sbjct: 372 IEKLIKRPLDVQRLTVDAPVRHHHEDR 398


>gi|225456912|ref|XP_002277894.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 611

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 182/358 (50%), Gaps = 3/358 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    E +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L     + A+
Sbjct: 195 NFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ 254

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELAVQ+  E     + T +      GG     + RDLQ G 
Sbjct: 255 PP-LVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGV 313

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 314 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYW 373

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYHG 243
           SAT    + TLA+ + ++  +V I S++ + +    + V V         +         
Sbjct: 374 SATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEKYNRLIRLLKEVMD 433

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ +    +  +++ G+ +Q ER   L   + GR+ +  ATDV
Sbjct: 434 GSRILIFMETKKGCDQVTRQMRMDGWPSLSIHGDKNQAERDWVLAEFKSGRSPIMTATDV 493

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           AARG+D+ D++ VI+ +  S+ E+ +HR GRTGRAG KG ++     +  + A  L +
Sbjct: 494 AARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSNAKFARDLIK 551


>gi|289550302|ref|YP_003471206.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315660238|ref|ZP_07913093.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
 gi|289179834|gb|ADC87079.1| Cold-shock DEAD-box protein A [Staphylococcus lugdunensis HKU09-01]
 gi|315494665|gb|EFU83005.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           lugdunensis M23590]
          Length = 504

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 132/478 (27%), Positives = 235/478 (49%), Gaps = 18/478 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+++   +   + L   G+   T +Q+  +   L  +D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKDLGISEKTVQTLENMGFKEPTPIQKDSIPYALEGRDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +       S   +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVNK-------SGVQSLILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    V   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQALVQQFMKTPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    +  +     P  + +   RE D +  +Q+ +  D+ +   +++   LL ++D  
Sbjct: 354 QIEEVNSRRMTALRPPHRKEVLKAREDDIKEKVQNWMSKDN-EPRLQRISSELLKEYDST 412

Query: 415 KIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+         E       P++  + + +   + R      G +   +    
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRQSKNGGNHRRSNKKRGGKFETRNKRT 470


>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
 gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
          Length = 765

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 253 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 430 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 490 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 549

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 550 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 605

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 606 LEKGKEAVVQEPERSWFQTKEERKKEK 632


>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 494

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 190/366 (51%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +PA    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  
Sbjct: 66  GKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      ++   L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++     V    +  A++++++ +  K 
Sbjct: 186 ATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQNEWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +    + R    +
Sbjct: 306 GIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIERLIKQN 365

Query: 367 VVWEPA 372
           +  +  
Sbjct: 366 IPRKEV 371


>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
           troglodytes]
          Length = 796

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 460

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 461 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 580

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 581 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 636

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 637 LEKGKEAVVQEPERSWFQTKEERKKEK 663


>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 426

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+ E+GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L + L+   
Sbjct: 8   LPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLANLM--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A+    L + PTRELA Q+   +        +  AV  GGV ++ + + L+ G  
Sbjct: 66  GERAKANQVRVLILTPTRELAAQIHESVCNYGQNLPLRSAVVFGGVKINPQMQLLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P+KR+ L+FS
Sbjct: 126 VLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V ++++  N     +      V  + +   +  +++ +  K 
Sbjct: 186 ATFSNDIRKLAKGLVNDPVEISVSPRNTTAESVTQFIYEVDKTKKSPLLSTLIKENKWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   ++G+  V +ATD+AAR
Sbjct: 246 VLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASFKEGKITVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  LE V++ +L    E+ +HR GRTGRAG KG ++ ++ ++  +  + + +     
Sbjct: 306 GIDIDQLEQVVNFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKDIEKLIKKI 365

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 366 IPRKVQPGFE 375


>gi|91782534|ref|YP_557740.1| putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
 gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
           LB400]
          Length = 491

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 213/388 (54%), Gaps = 4/388 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   +   I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L + 
Sbjct: 11  STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +
Sbjct: 71  QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQ 130

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P
Sbjct: 131 SEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLP 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V 
Sbjct: 191 KERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQ 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R  G K  IVFC+++   SR ++ L        A+ G+ SQ ER  AL   + G    
Sbjct: 251 LIRERGLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEA 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++  
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            + +     +  +       +R    +R
Sbjct: 371 DIEKLIKRPLEVQRLTVEAPVRHHHEER 398


>gi|40225538|gb|AAH11927.2| DDX27 protein [Homo sapiens]
 gi|48257213|gb|AAH16060.2| DDX27 protein [Homo sapiens]
          Length = 767

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 195 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 254

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 255 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 311

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 312 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 371

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 372 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 431

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 432 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 491

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 492 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 551

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 552 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 607

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 608 LEKGKEAVVQEPERSWFQTKEERKKEK 634


>gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 539

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/451 (31%), Positives = 234/451 (51%), Gaps = 16/451 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     D I+ +  K       L A+  P
Sbjct: 355 ENLTKKQMKPLCPATAEEAFQAKKKVALKKIERDFADDVIRSNFDKFKGDAIQLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           E++A   L +    +  P+ +  V +   + 
Sbjct: 415 EELALYILSLT---VQDPDSLPEVEIAREKP 442


>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 253 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 430 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 490 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 549

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 550 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 605

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 606 LEKGKEAVVQEPERSWFQTKEERKKEK 632


>gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
          Length = 523

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|283471297|emb|CAQ50508.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 506

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  DS +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKDS-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
           mulatta]
          Length = 763

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 250

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 251 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 307

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 308 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 367

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 368 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 427

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 428 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 487

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 488 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 547

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 548 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 603

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E         R + +
Sbjct: 604 LEKGKEAVVQEPERNWFQTKEERKKEK 630


>gi|319951788|ref|YP_004163055.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319420448|gb|ADV47557.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 429

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 196/369 (53%), Gaps = 2/369 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  I + I +AL+  GY N T +QE  +   L+ KD+L  AQTG+GKT AFG+ + 
Sbjct: 1   MTFKELGIAEPILKALTSEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +   N          AL + PTRELA+Q+G         TG+   V  GGV   ++  
Sbjct: 61  HHIYTNNSGIGKRK-IKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D +    +++  L+ VVLDEAD+MLD+GF  D++ I+   P K
Sbjct: 120 ALRQGVEILIATPGRLLDLMNQGFISLRDLEYVVLDEADQMLDMGFIHDVKKIIAKLPAK 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  L++    +  +V I  E      ++     V   D+   +V+++
Sbjct: 180 RQSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKVKLLVHLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               AK  +VF  T+   ++  K+L +      A+ G  SQ  R NAL   +DG+  V +
Sbjct: 240 ETKEAKAVLVFSRTKHGANKIVKLLDKAGINAAAIHGNKSQTARQNALNDFKDGKLTVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ DL LV++ +L + PE  +HR GRTGRA   G+++    +  +   + +
Sbjct: 300 ATDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLKDI 359

Query: 360 FREANVSVV 368
            +    ++ 
Sbjct: 360 QKLIKQTIP 368


>gi|32425487|gb|AAH09304.2| DDX27 protein [Homo sapiens]
          Length = 769

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 197 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 256

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 257 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 313

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 314 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 373

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 374 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 433

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 434 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 493

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 494 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 553

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 554 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 609

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 610 LEKGKEAVVQEPERSWFQTKEERKKEK 636


>gi|94498002|ref|ZP_01304566.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94422585|gb|EAT07622.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 459

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 194/375 (51%), Gaps = 3/375 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +ALS + Y   T +Q+  +   L+  D+   AQTG+GKT AF L       A N
Sbjct: 8   LSEPILKALSAKKYTAPTPIQQKAIPVLLQGHDLCGIAQTGTGKTAAFALPSLDY-FARN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P      L ++PTRELA Q+ +          + V    GGV ++R+ + L  G  
Sbjct: 67  PKPTPVRGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVETVFGGVPINRQIKALSQGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I  +   I   +  VLDEAD+M+D+GF   ++ +    P  R+ L FS
Sbjct: 127 IVVATPGRLLDLIDQRCFTIKDTEIFVLDEADQMMDMGFIHPLKRVAKLLPTDRQNLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +  D V+V++A ++     +  +A  V  +++   +  +L       
Sbjct: 187 ATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQATFVNQAEKQALLHIVLETEDIDR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+    R  + L        A+ G  SQ +R+ ALQ  R G+ ++ +ATD+AAR
Sbjct: 247 ALIFTRTKHGADRVVRFLEGAGIDAFAIHGNKSQGQRTTALQAFRQGKVKLLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ E+ + PE  +HR GRT RAG +G+++  +  + +   + + R   V 
Sbjct: 307 GIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIERATRVK 366

Query: 367 VVWEPAPS--VEAIR 379
           +   P P   +EA+R
Sbjct: 367 LDVAPLPENFLEAVR 381


>gi|324326484|gb|ADY21744.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPLKREIIEQPKIKRVDE 379


>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 571

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 86  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 146 RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 205

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 206 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 265

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+ +A+V +
Sbjct: 266 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQL 325

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 326 LRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 385

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 386 VATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 445

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +     +  R R 
Sbjct: 446 IEKLIKRPLEVQTLALDKPSRHRH 469


>gi|15925071|ref|NP_372605.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927656|ref|NP_375189.1| hypothetical protein SA1885 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283733|ref|NP_646821.1| hypothetical protein MW2004 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486874|ref|YP_044095.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650754|ref|YP_186888.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161548|ref|YP_494683.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195982|ref|YP_500795.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268533|ref|YP_001247476.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394597|ref|YP_001317272.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151222197|ref|YP_001333019.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980397|ref|YP_001442656.1| hypothetical protein SAHV_2066 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510293|ref|YP_001575952.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316240|ref|ZP_04839453.1| putative helicase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006870|ref|ZP_05145471.2| putative helicase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793840|ref|ZP_05642819.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|258407008|ref|ZP_05680158.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|258422029|ref|ZP_05684946.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|258433601|ref|ZP_05688674.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|258440496|ref|ZP_05690666.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258445704|ref|ZP_05693882.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258450158|ref|ZP_05698253.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|258453208|ref|ZP_05701199.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|258453387|ref|ZP_05701369.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|262049250|ref|ZP_06022125.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262052494|ref|ZP_06024692.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|269203717|ref|YP_003282986.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895275|ref|ZP_06303488.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|282911647|ref|ZP_06319446.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282923070|ref|ZP_06330755.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282929553|ref|ZP_06336950.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|284025116|ref|ZP_06379514.1| putative helicase [Staphylococcus aureus subsp. aureus 132]
 gi|294850566|ref|ZP_06791293.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|295407012|ref|ZP_06816814.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|296275711|ref|ZP_06858218.1| putative helicase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246745|ref|ZP_06930562.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|81648913|sp|Q6G7M9|Y1985_STAAS RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAS1985
 gi|81694077|sp|Q5HEB9|Y2072_STAAC RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SACOL2072
 gi|81704263|sp|Q7A0D2|Y2004_STAAW RecName: Full=Probable DEAD-box ATP-dependent RNA helicase MW2004
 gi|81705333|sp|Q7A4G0|Y1885_STAAN RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SA1885
 gi|81781186|sp|Q99SH6|Y2081_STAAM RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAV2081
 gi|122538977|sp|Q2FWH5|Y2316_STAA8 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAOUHSC_02316
 gi|123484971|sp|Q2FF45|Y2037_STAA3 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase
           SAUSA300_2037
 gi|13701876|dbj|BAB43168.1| SA1885 [Staphylococcus aureus subsp. aureus N315]
 gi|14247854|dbj|BAB58243.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21205175|dbj|BAB95869.1| MW2004 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245317|emb|CAG43792.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284940|gb|AAW37034.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127522|gb|ABD22036.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203540|gb|ABD31350.1| ATP-dependent RNA helicase, DEAD box family, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741602|gb|ABQ49900.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947049|gb|ABR52985.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374997|dbj|BAF68257.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722532|dbj|BAF78949.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369102|gb|ABX30073.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787812|gb|EEV26152.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9781]
 gi|257841341|gb|EEV65785.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9763]
 gi|257841929|gb|EEV66361.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9719]
 gi|257849332|gb|EEV73311.1| ATP-dependent RNA helicase [Staphylococcus aureus A9299]
 gi|257852565|gb|EEV76483.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257855543|gb|EEV78480.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257856632|gb|EEV79538.1| ATP-dependent RNA helicase [Staphylococcus aureus A6224]
 gi|257859154|gb|EEV82011.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus A5948]
 gi|257864368|gb|EEV87114.1| ATP-dependent RNA helicase [Staphylococcus aureus A5937]
 gi|259159615|gb|EEW44661.1| hypothetical protein SA930_0070 [Staphylococcus aureus 930918-3]
 gi|259162615|gb|EEW47182.1| hypothetical protein SAD30_0461 [Staphylococcus aureus D30]
 gi|262076007|gb|ACY11980.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941681|emb|CBI50088.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282324412|gb|EFB54725.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282589032|gb|EFB94136.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A10102]
 gi|282593261|gb|EFB98258.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|282762348|gb|EFC02495.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8117]
 gi|285817746|gb|ADC38233.1| Cold-shock DEAD-box protein A [Staphylococcus aureus 04-02981]
 gi|294822586|gb|EFG39028.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|294968037|gb|EFG44064.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8819]
 gi|297176405|gb|EFH35677.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus A8796]
 gi|312830433|emb|CBX35275.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315128752|gb|EFT84752.1| putative helicase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196987|gb|EFU27329.1| putative helicase [Staphylococcus aureus subsp. aureus CGS01]
 gi|323439203|gb|EGA96930.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
 gi|323442419|gb|EGB00048.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329314766|gb|AEB89179.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724041|gb|EGG60565.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726361|gb|EGG62829.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729332|gb|EGG65740.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 506

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|296159168|ref|ZP_06841995.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890729|gb|EFG70520.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 491

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 136/388 (35%), Positives = 212/388 (54%), Gaps = 4/388 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   +   I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L + 
Sbjct: 11  STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ +
Sbjct: 71  QRLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQ 130

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  P
Sbjct: 131 SEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLP 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT S  I  LA  Y +D   + +A  N   +++      VA  D+  A+V 
Sbjct: 191 KERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVAEGDKTGAVVQ 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R  G K  IVFC+++   SR  + L        A+ G+ SQ ER  AL   + G    
Sbjct: 251 LIRERGLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEIEA 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++  
Sbjct: 311 LVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLA 370

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            + +     +  +       +R    +R
Sbjct: 371 DIEKLIKRPLEVQRLTVEAPVRHHHEER 398


>gi|302333727|gb|ADL23920.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 506

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|311103372|ref|YP_003976225.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
 gi|310758061|gb|ADP13510.1| ATP-dependent RNA helicase RhlE 1 [Achromobacter xylosoxidans A8]
          Length = 506

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 191/366 (52%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++E GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+ + 
Sbjct: 12  LADSLLRAIAETGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQKK 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    
Sbjct: 72  PELRKPGRPRCLILTPTRELTAQVEESVQTYGKYTPLNSMVMFGGVNINPQISALRKPLD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    +   V++   N     +     +V    + + I +I+R  G   
Sbjct: 192 ATFSDEIRTLARGVLNNPGEVSVTPRNTATELVTQTVHMVEQHHKRDLISHIIRESGWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +D    V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDSTVTVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R    +
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKT 371

Query: 367 VVWEPA 372
           +  +P 
Sbjct: 372 IERKPV 377


>gi|156084974|ref|XP_001609970.1| p68-like protein [Babesia bovis]
 gi|154797222|gb|EDO06402.1| p68-like protein [Babesia bovis]
          Length = 529

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 184/376 (48%), Gaps = 9/376 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+   P  I +A+   G+   T +Q       L  +DV+  A+TGSGKT+AF L    
Sbjct: 109 SFEHTSFPDYILKAIRAAGFTAPTPIQVQGWPIALSGRDVIGIAETGSGKTLAFLLPAVV 168

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A++    P   P+ L +APTREL  Q+ ++     A + +  +V  GGV   ++  +
Sbjct: 169 HINAQHL-LRPGDGPIVLVLAPTRELVEQIRQQCVQFGASSRIKSSVAYGGVPKRQQMYE 227

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++  PGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R
Sbjct: 228 LKRGVEILLACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 287

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVN 237
           + LM+SAT    + +LA +  ++               H+      V+     R      
Sbjct: 288 QTLMWSATWPREVQSLAHDLCREEPVHINVGSLDLKTCHNVSQEVFVIEEHEKRSQLKKI 347

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +       ++F  T+ +    TK L    +  +++ G+  Q+ER+  L   + G+  +
Sbjct: 348 LGQIGQGTKILIFTDTKKTADSITKELRLDGWPALSIHGDKKQEERNWVLNEFKSGKHPI 407

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+ D+++VI+ +  +  E+ +HR GRTGR G KG S   +  +  R A 
Sbjct: 408 MVATDVASRGLDVRDVKVVINFDFPNQIEDYVHRIGRTGRGGNKGASYTFLTPDKNRVAR 467

Query: 358 ---RLFREANVSVVWE 370
              +L REA   +  E
Sbjct: 468 ELVKLMREAKQQISPE 483


>gi|283771250|ref|ZP_06344139.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
 gi|283459455|gb|EFC06548.1| dead-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 506

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AI+F  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIIFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|258422918|ref|ZP_05685818.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
 gi|257846942|gb|EEV70956.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A9635]
          Length = 506

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 AQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
 gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
          Length = 455

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/459 (29%), Positives = 213/459 (46%), Gaps = 17/459 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   T +Q A +   +  +D++ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILDAVAEQGYDTPTPIQLAAIPAIIEGRDMMAAAQTGTGKTAGFTLPLLERL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +  +   AL + PTRELA QV   +E       +   V  GGV V+ +   L+ G  
Sbjct: 66  GKPAGNNQVRALVLTPTRELAAQVAESVELYGKNLKLTSFVVYGGVKVNPQMMRLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLFNQRAVKFDQLEVLVLDEADRMLDMGFIHDIKKILKVLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V V++A  N   + ++ R   V  + +   + +++  +  K 
Sbjct: 186 ATFSDDIRNLAKGLINDPVEVSVAPANTTAATVEQRLHPVDKAKKPALLSHLILQNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  AL   +DG+ RV +ATD+ AR
Sbjct: 246 VLVFTRTKHGANRLVKQLEADKINAAAIHGNKSQSARMKALAGFKDGQVRVLVATDIVAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L +  E+ +HR GRTGRAG  G ++  +     +    + R  N +
Sbjct: 306 GLDIDQLPQVVNFDLPNIAEDYVHRIGRTGRAGASGHAISFVTTEEAKELADIERLINAT 365

Query: 367 VVWEPAPSVE---AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +  E  P  E    ++E D                 +K        +      AA   + 
Sbjct: 366 IAREVVPGFEPSNQVKETDLN------------IKAKKPKKAKKPREFSSTDGAAKVAQP 413

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            R+   +P +   +      ++  +     +V       
Sbjct: 414 RRSNANSPAKKPAIGQKPAGEQAANKPAKRRVWRNKPKP 452


>gi|241888805|ref|ZP_04776111.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
 gi|241864481|gb|EER68857.1| ATP-dependent RNA helicase DeaD [Gemella haemolysans ATCC 10379]
          Length = 486

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 236/485 (48%), Gaps = 14/485 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +   Q   ++L+   +++ T +Q   +   L   D+L  AQTGSGKT AFG+ L
Sbjct: 1   MTTFEELGVSQETVQSLTNMNFISPTGIQTETIPYVLSGVDILAQAQTGSGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D         +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  V-------DTVRRNDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  + + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K + KD   +   S+     DI   A +   +++   +V  
Sbjct: 174 RHQTLLFSATMPKTIMELSKEFMKDYKLIKTMSDEDLKPDITEYATIARENEKLETLVGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V      L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELASALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G+++  +        + 
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKD 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +       +      S++ +++    R+  +  L +D+   +   + + LLA+ + EK+ 
Sbjct: 354 IENSRGERMKMLRPYSLDEVKKSRHNRLFDEVVLEMDNNHVEFNSLANKLLAETNAEKVI 413

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              L    + L   ++   V L   +   R   +  +   G+    +  +    +   ++
Sbjct: 414 TILL----SKLINDKKEVDVELSFEKPLPRRQDKGRRSNRGNDRRRRSDNRDKKNRNERR 469

Query: 478 KAEAR 482
             + +
Sbjct: 470 GTDKK 474


>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 486

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 128/391 (32%), Positives = 204/391 (52%), Gaps = 11/391 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSV--EAIRERD 382
            R     +       +EP P+V  E I++R 
Sbjct: 362 ERLIKREIPQEVIAGFEPDPNVKPEPIQQRR 392


>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum 'So ce 56']
 gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum 'So ce 56']
          Length = 478

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 4/374 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   + +  A+   GY   T +Q+  + P L   D+L  AQTG+GKT AF L +   
Sbjct: 3   FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L               L + PTRELA QV           G+  AV  GGV    +   L
Sbjct: 63  LAQSGGP--RQGGLRVLVLTPTRELAAQVAESFTTYGKNLGLRTAVVFGGVGQRPQMEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  ++V TPGRL D           L  +VLDEAD MLD+GF  DI  +L   P++R+
Sbjct: 121 RRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRMLDMGFIHDIRRVLAMLPERRQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+ P I  LA +  +  VRV +A       +ID R V V  SD+   + ++L+ 
Sbjct: 181 TLLFSATMPPDILKLANSILRSPVRVEVARIATTAENIDQRVVFVERSDKRAMLEHVLKD 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + AIVF  T+   +R  + L+    + VA+ G  SQ  R  AL   + G   V +AT
Sbjct: 241 PALRRAIVFTRTKHGANRVVQQLSRARIEAVAIHGNKSQGARERALASFKQGTTSVLVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ D+  VI+ +L + PE+ +HR GRT RAG  G+++       +     + R
Sbjct: 301 DIAARGIDIDDISHVINYDLPNIPESYVHRIGRTARAGASGVALSFCDSEERAYLADIER 360

Query: 362 EANVSVVWEPAPSV 375
                +     P V
Sbjct: 361 LIQKRLPLLADPGV 374


>gi|261341381|ref|ZP_05969239.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
 gi|288316692|gb|EFC55630.1| ATP-dependent RNA helicase RhlE [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  +++E+GYV  T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPEILRSIAEQGYVEPTPIQQKAIPAVLQGRDLMASAQTGTGKTAGFTLPLLELLVKNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    + + V +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKKE 367

Query: 367 VV------WEPAPSVEA 377
           +       ++  PS++A
Sbjct: 368 IPRITTEGYDVDPSIQA 384


>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
           thailandensis MSMB43]
          Length = 402

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + LA+     +A+ G  SQ  R+ AL   ++   +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLAKDGISAMAIHGNKSQSARTRALSEFKNSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  E  P  E
Sbjct: 368 EIPQEVIPGFE 378


>gi|327191069|gb|EGE58122.1| ATP-dependent RNA helicase protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 218/462 (47%), Gaps = 19/462 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVADAGYSTPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 61  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  RV +A        +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERVEVAKPASAAKTVTQRFVASHSKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 238 ELVRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 357

Query: 356 AERLFREANVSVVWEP-----APSVEAIRERD------AQRILQDPLFLDSIQGDEKKMV 404
            + + +     V W        P  E  ++ D       +R  +D       +G      
Sbjct: 358 VDAIEKLIGEKVEWLNGDLNSLPPAEEGKDSDRPRRHGRERGDKDRGRGRGNRGAASHKS 417

Query: 405 DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
           D  +  +D + I A   R          E  P +       +
Sbjct: 418 DNDIQDNDVQVIEAAPARAEVLKNERKAEQKPQNNARNNRPY 459


>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 511

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 214/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 34  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 94  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 154 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 214 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  +VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 274 LRDRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 334 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 393

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +     +  R R 
Sbjct: 394 IEKLIKRPLEVQTLALDKPSRHRH 417


>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 497

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 214/384 (55%), Gaps = 4/384 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N  ++++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G K  +VFC+++   SR  + L        A+ G+ SQ ER  AL   + G     
Sbjct: 252 LRDRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERD 382
           + +     +  +     +  R R 
Sbjct: 372 IEKLIKRPLEVQTLALDKPSRHRH 395


>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
 gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
 gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 481

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 372 IEKLIKRTLSLETL 385


>gi|163855229|ref|YP_001629527.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 476

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 203/388 (52%), Gaps = 4/388 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F +  +   + +++++ GY   T +Q   L   +  +DV+ +AQTG+GKT AF L + 
Sbjct: 17  STFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPIL 76

Query: 60  STLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L+   N   SPA  P+  L + PTRELA QV   ++     T +  AV  GGV +  +
Sbjct: 77  HRLMPLANTSASPARHPVRTLILTPTRELADQVYESVKRYSKHTPLRSAVVFGGVDIGPQ 136

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +  L+ G  I+V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D++ I+   P
Sbjct: 137 KEALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLP 196

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT S  I  L + Y    V + +A+ N     +   A  +    +  A+V+
Sbjct: 197 AQRQGLLFSATFSNEIRKLGRTYLNQPVEIEVAARNATADTVSQIAYQMPSDAKRAAVVH 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++  G K  IVF +T+   +R  + L     +  ++ G+ SQ +R  AL   + G   V
Sbjct: 257 LVKSRGLKQVIVFSNTKIGTARLARELERDGVRAESIHGDKSQADRMKALDAFKAGELEV 316

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   +  R  +
Sbjct: 317 LVATDVAARGLDVAGVPCVINYDLPHNAEDYVHRIGRTGRAGASGEAIALFTADETRYLQ 376

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            + +     V          +  R   R
Sbjct: 377 DIEKLTKRPVPRGTLDVPRDLVARSHTR 404


>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 571

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 4/374 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  A++E+GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 162 RLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 221

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 222 AELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 281

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   S +      VA  D+  A+V +
Sbjct: 282 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNAAASTVTQIVYDVAEGDKQAAVVKL 341

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 342 IRDRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEIEAL 401

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 402 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 461

Query: 359 LFREANVSVVWEPA 372
           + +    ++  E  
Sbjct: 462 IEKLIKRTLSLETL 475


>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 630

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +       +V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGRVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQNARTKALADFKANSVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERV 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TRQKIA 373


>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 435

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 201/390 (51%), Gaps = 4/390 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++     I +AL   GY N T +QE  +    + KD+L  AQTG+GKT AF + +   
Sbjct: 20  FKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQM 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    ++ +       L + PTRELA+Q+    +    +  +   V  GGV    +R  L
Sbjct: 80  LTYSKEKTAQKR-IRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDAL 138

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D      +++  L+  VLDEAD MLD+GF  D++ ++   PKKR+
Sbjct: 139 RKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQ 198

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA +  ++  +V +  E+     I      V+ SD+ + + ++L+ 
Sbjct: 199 TLLFSATMPAEIQKLASHILEEPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKS 258

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ +VF  T+    R  K LA+   Q  A+ G  SQ  R NAL   +D + RV +AT
Sbjct: 259 ENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALSNFKDRKLRVLVAT 318

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ DL  VI+ +L + PE+ +HR GRTGRAG+ G ++             + +
Sbjct: 319 DIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLLDIEK 378

Query: 362 EANVSVVW-EPAPSVEAIRERDAQRILQDP 390
              + +   E  P    I  +   +  + P
Sbjct: 379 SIRMEIPRVEDQPYSLHISPKKPGQAAKKP 408


>gi|195977782|ref|YP_002123026.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 538

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 134/448 (29%), Positives = 229/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    N+ + I  A+   G+   + +QE  +   L  +DV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTAFNLSEDIQSAVVTAGFEKASPIQELTIPLALEGRDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +   ++         AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  NKIRTADNTI------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH+VVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHVVVGTPGRLLDLIKRKALRLDHVETLILDEADEMLNMGFLEDIEAIISRVPDH 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V + ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQLDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLTMI 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDP 413
                  +      + E     +++ A + ++     D+I+ + +K     +   A+  P
Sbjct: 355 EHLTKKRMKPLKPATAEEAFQAKKKVALKKIERDFADDAIRSNFEKFKGDAMKLAAEFTP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +         E+       
Sbjct: 415 EELALYILSLTVQDPDTLPEVEIAREKP 442


>gi|49484306|ref|YP_041530.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904748|ref|ZP_06312622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282906426|ref|ZP_06314277.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282920258|ref|ZP_06327982.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958860|ref|ZP_06376305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295428668|ref|ZP_06821294.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|81650664|sp|Q6GEZ3|Y2168_STAAR RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SAR2168
 gi|49242435|emb|CAG41149.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282316118|gb|EFB46499.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus C427]
 gi|282330376|gb|EFB59894.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282594781|gb|EFB99758.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789578|gb|EFC28401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|295127338|gb|EFG56978.1| ATP-dependent RNA helicase DeaD [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|315193240|gb|EFU23638.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 506

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELIEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 448

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 196/373 (52%), Gaps = 3/373 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY N T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSG 67

Query: 67  DRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + ASA     AL + PTRELA QV   +        +  AV  GGV ++ + + L++
Sbjct: 68  TPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKH 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH++   +N++H++ +VLDEAD MLD+GF  DI  +L + PK R+ L
Sbjct: 128 GVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPKNRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA         + +A  N     I+ +   V    +   + ++++ + 
Sbjct: 188 LFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHLIKSNN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+   ++  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+
Sbjct: 248 WSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +     + + +  
Sbjct: 308 AARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELEMLKDIEKLI 367

Query: 364 NVSVVWEPAPSVE 376
              +  E  P  E
Sbjct: 368 KRKLPSEVIPGFE 380


>gi|330972612|gb|EGH72678.1| helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 498

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 213/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GK   F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKAGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               +            V    P V    +    R  +            ++       K
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRDKGKDKGK 427

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             P   AA      R      E+           R    +        + D F+   
Sbjct: 428 EKP---AAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDDE 481


>gi|325293235|ref|YP_004279099.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061088|gb|ADY64779.1| ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 533

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 201/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   Q +  A+++ GY   T +Q   + P L ++D+   AQTG+GKT +F L +
Sbjct: 30  LTTFSDLGLSQKVLSAIADAGYTTPTPIQAGAIPPALEKRDICGIAQTGTGKTASFVLPM 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 90  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHKLNVALLIGGVSFEDQD 146

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 147 RKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKMIPF 206

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---- 234
            R+ L FSAT+ P I  LA  + ++  R+ +A  +     +  R V     D +      
Sbjct: 207 TRQTLFFSATMPPEIQKLADRFLQNPTRIEVAKPSSTAKTVTQRIVASHNKDYEKRAVLR 266

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +        KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+
Sbjct: 267 DLVRAEEAELKNAIIFCNRKKDVADLFRSLDRHGFSVGALHGDMDQRSRTTMLQNFRDGQ 326

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +
Sbjct: 327 LTLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSDAK 386

Query: 355 RAERLFREANVSVVW 369
             + + +     V W
Sbjct: 387 YLDAIEKLITEKVEW 401


>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 528

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 147/550 (26%), Positives = 224/550 (40%), Gaps = 68/550 (12%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + + +AL+  GY   T +Q   +   +  KD+L  AQTG+GKT AF L + 
Sbjct: 15  TTFESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPIL 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L AEN           L ++PTRELA Q+    +      G  VAV  GGV    + R
Sbjct: 75  HRL-AENRVAPLPRTTRCLILSPTRELASQIADSFKAYGRHLGFKVAVVFGGVKYGPQER 133

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +Q G  ++V TPGRL DH++ K L++S  +  VLDEAD+MLDLGF   I  I+   P K
Sbjct: 134 AIQAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQMLDLGFVKPIRQIVSRIPAK 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA    K+ V+V +  ++     I+   + V    +   +  + 
Sbjct: 194 RQNLFFSATMPTEIGKLAGELLKEPVKVQVTPQSTTVERINQSVIHVEQGRKRALLTEMF 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF  T+    +    L     Q  A+ G  SQ +R   L   + G+ RV +
Sbjct: 254 ADDNFTRCLVFTKTKHGADKVAAYLEAGGVQAGAIHGNKSQPQRERTLAAFKAGKLRVLV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  +  V++ EL   PE  +HR GRT RAG  G ++  +  +  +  + +
Sbjct: 314 ATDIAARGIDVDGVSHVVNFELPFVPEAYVHRIGRTARAGADGSAISFVAGDEMKLLKDI 373

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     V  +  P+ +                         +  D  L   D   +AAG
Sbjct: 374 EK-----VTRQKIPATD-------------------------RRNDKSLGLLDQSIMAAG 403

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-----GGSRDNFKGSSWFSLSVG 474
              +         E  P      R+  RD  +    G      G     +  +      G
Sbjct: 404 ---VGTKATMPDREERPRGEGRNRNPRRDGVKKEHGGQPHRVRGKGAPNRDGAR---DGG 457

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD--GVDLLRRTVKLDKGIQ 532
             Q                   +SI  +          V  D    D  R     ++ + 
Sbjct: 458 RDQ------------NRGHNGDRSITNV----------VPFDPLAADRARSAANANRPVS 495

Query: 533 LKYLGGEKPD 542
               G  KP+
Sbjct: 496 SNQGGEAKPE 505


>gi|209886522|ref|YP_002290379.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 512

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 189/372 (50%), Gaps = 3/372 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  + + I  ALSE  YV  T +Q   +   +  +DV+  AQTG+GKT +F L +
Sbjct: 1   MTSFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R  P +    L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 61  LHRLLENRVRPQPKT-CRVLVLSPTRELSGQILDSFTAYGRHLRLSATLAIGGVPMGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++G  L +  ++ +VLDEAD MLD+GF  DI  I+   P 
Sbjct: 120 RALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRMLDMGFIHDIRKIVAKLPH 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA++  ++  RV +   +     I  R + +  S +   +  +
Sbjct: 180 RRQTLFFSATMPKDIADLAEHMLREPARVAVTPVSSTVERIAQRIIQLDSSAKPATLSEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  + L +      A+ G  SQ  R   L   R+G  R  
Sbjct: 240 LKSEPVNRALVFTRTKHGADKVVRSLVKAGIPAEAIHGNKSQNHRERVLAAFRNGDIRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G ++ ++          
Sbjct: 300 VATDIAARGIDVDGITHVVNFDLPNVPETYVHRIGRTARAGAEGTAISLVAGEENAYLRD 359

Query: 359 LFREANVSVVWE 370
           + R   +++  E
Sbjct: 360 IERLIRITLPRE 371


>gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
          Length = 523

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGIKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
 gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
          Length = 437

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 186/374 (49%), Gaps = 1/374 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + +  A+ +  Y   T +QE  +   L  +D+L  A+TG+GKT AF L + 
Sbjct: 1   MKFKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   ++         AL +APTRELA+Q+    + + +   +   V  GGV    +  
Sbjct: 61  QKLYLRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSFVNLKSTVIFGGVRQGSQVT 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  +++ TPGRL D  +   L++SH++  VLDEAD MLD+GF +DI  I+   PK+
Sbjct: 121 KIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRMLDMGFINDIRRIMKYIPKQ 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   I  L      +  +V ++S       I      V  +++   ++ +L
Sbjct: 181 RQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSLYYVDKANKAKLLIKLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 NAIVF  T+ + +   K L     +  A+ G+ SQ  R  AL   ++ + RV +
Sbjct: 241 ENPQIYNAIVFVRTKRNANTLCKKLQRAGIEAEAIHGDKSQNARVRALNRFKEDKVRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L    EN +HR GRT RAG  G ++       +     +
Sbjct: 301 ATDIAARGIDVDHLTHVVNFDLPEQAENYVHRIGRTARAGADGTAITFCCFQEKSDLSEV 360

Query: 360 FREANVSVVWEPAP 373
            +     +     P
Sbjct: 361 EKFIGEKIPVIENP 374


>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 480

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 200/383 (52%), Gaps = 9/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I +LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVV------WEPAPSVE 376
            R     +       +EP PS +
Sbjct: 362 ERLIKREIPQEVIAGFEPDPSAK 384


>gi|148550055|ref|YP_001270157.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148514113|gb|ABQ80973.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 627

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 211/462 (45%), Gaps = 5/462 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +       +V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERV 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
               +        +A  + +A++        ++ +G   +      AK            
Sbjct: 368 TKQRIADGDLMGFDA-SQVEAEKPETRERPQNNGRGGRNQQARGEGAKDSNGGRKDKGKD 426

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             +A   A  +         + +     R  K       N  
Sbjct: 427 KGKARQQAAAKPDDKEKSGDKQQQPRKPRDKKPRPQQASNNG 468


>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 435

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 194/370 (52%), Gaps = 3/370 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++     I +AL   GY N T +QE  +    + KD+L  AQTG+GKT AF + +   
Sbjct: 20  FKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAIPILQM 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    ++ +       L + PTRELA+Q+    +    +  +   V  GGV    +R  L
Sbjct: 80  LTYSKEKTAQKR-IRTLVLTPTRELAIQIKENFDAYSKELPIRNLVIYGGVGQQPQRDAL 138

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL D      +++  L+  VLDEAD MLD+GF  D++ ++   PKKR+
Sbjct: 139 RKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRMLDMGFIHDVKKVISIIPKKRQ 198

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA +  +D  +V +  E+     I      V+ SD+ + + ++L+ 
Sbjct: 199 TLLFSATMPAEIQKLASHILEDPSKVEVTPESTTAEKIQQSVYFVSKSDKRHLLTHLLKS 258

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ +VF  T+    R  K LA+   Q  A+ G  SQ  R NAL   +D + RV +AT
Sbjct: 259 ENIEHTLVFSRTKHGADRIAKDLAKQGIQAAAIHGNKSQSARQNALNNFKDRKLRVLVAT 318

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ DL  VI+ +L + PE+ +HR GRTGRAG+ G ++             + +
Sbjct: 319 DIAARGIDIDDLSYVINFDLPNIPESYVHRIGRTGRAGKDGKAISFCDDEEYAYLLDIEK 378

Query: 362 EANVSVVWEP 371
              + +    
Sbjct: 379 SIRMEIPRVE 388


>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
 gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2]
 gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
           CGD2M]
          Length = 480

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPREVIAGFE 378


>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 480

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYTEHRSAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPREVIAGFE 378


>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 418

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 6/369 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +AL E GY   T +Q   +   L+  D+L  AQTG+GKT AF + +   LL+EN  
Sbjct: 10  DPILQALQEEGYTTPTPIQAEAIPIILQGTDLLGCAQTGTGKTAAFAIPILQ-LLSENKV 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +        L + PTRELA+Q+G         TG+   V  GGV+ + +   L  G  IV
Sbjct: 69  YDKKRKIRTLIVTPTRELAIQIGESFNAYGRHTGLTNTVIFGGVNQNPQTAALIRGVDIV 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +    L++ H++ +VLDEAD MLD+GF  DI+ IL   PK+++ L FSAT
Sbjct: 129 IATPGRLLDLLNQGFLSLRHVEILVLDEADRMLDMGFIHDIKKILAVVPKQKQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I  LA     +  +V++   +     I+     V   ++++ +V+ILR    K A+
Sbjct: 189 MPAEIVKLAATILHNPSKVSVTPVSSTVEIINQSIYFVDKGNKNSLLVDILRDQAIKTAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K+L +H  +  A+ G  +Q  R  AL   +    RV +ATD+AARGI
Sbjct: 249 VFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALFNFKAQTTRVLVATDIAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DLE VI+ E+ +  E  +HR GRTGRAG KG ++       +     + +     ++
Sbjct: 309 DVDDLEYVINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLRDIEK-----LI 363

Query: 369 WEPAPSVEA 377
            +  P ++ 
Sbjct: 364 AKKIPVIDD 372


>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
 gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
          Length = 447

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|87198262|ref|YP_495519.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133943|gb|ABD24685.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 498

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 217/492 (44%), Gaps = 17/492 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + I  AL  +GY + T +Q   +   L  +D+L  AQTG+GKT AF L  
Sbjct: 1   MSYFSDLGLAEPILRALETKGYNDPTPIQRQAIPALLEGRDLLGIAQTGTGKTAAFALPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A      PAS  + L ++PTRELA Q+   ++       ++V    GGV + ++ 
Sbjct: 61  LHRLAANPQPRKPASCRM-LVLSPTRELAAQIADNMKGYARNLNLIVDCVFGGVPIGKQA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  I+V TPGRL D I  + L +   +  VLDEAD+M+DLGF   ++ + +  PK
Sbjct: 120 RRLVPGVDILVATPGRLLDLIDNRALTLGRTEIFVLDEADQMMDLGFIHALKRVANLLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----A 234
            R+ L FSAT+  AI  L K +  + VRV +A  +     ++     +  +++       
Sbjct: 180 TRQSLFFSATMPKAIEDLGKQFIVNPVRVEVAPNSTTAERVEQYVTFINQAEKQALLTLR 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I ++L+      A+VF  T+    R  + L+       A+ G  SQ +R+ AL+  R G 
Sbjct: 240 IRDLLKTKELDRALVFTRTKHGADRVVRHLSSAGIDARAIHGNKSQAQRTAALEAFRQGS 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+AARGID+  +  V + EL + PE  +HR GRT RAG  G+++     + + 
Sbjct: 300 CPVLVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGIAISFCAPDEKP 359

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             + + R   V V   P P              + P   +     + +       +    
Sbjct: 360 YLKDIERLTRVKVDALPLPENFTAEAAKLPAPSRKPAEQEQDARRDARDARGNGGRGGQG 419

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +  A        G     +  P      +DR   D    +    +    +      +  G
Sbjct: 420 RGQA------HGGRAQGRDGRPRDASPRQDRREGDRGPVRNPLHTDRTDRPE---RIE-G 469

Query: 475 SKQKAEARWLMP 486
            +   + R   P
Sbjct: 470 ERDGNKPRRFRP 481


>gi|114330892|ref|YP_747114.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas
           eutropha C91]
 gi|114307906|gb|ABI59149.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
          Length = 455

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 140/450 (31%), Positives = 211/450 (46%), Gaps = 13/450 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     I +A+   GY + T +Q+  +   +   DV+ SAQTG+GKT AF L    
Sbjct: 2   SFENLNLHPAIVKAVLAAGYTSPTPIQQQAIPELIAGHDVMASAQTGTGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L            P  L + PTRELA+QV             V  V  +GG+    + +
Sbjct: 62  RLAT--PAKIQGRGPRILVLTPTRELALQVSEAASKYGKFLPRVNVVSILGGMPYPLQNK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DHI    ++ S L+ +VLDEAD MLD+GF  D+E I  S+P  
Sbjct: 120 LLSQVVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIHDVERIASSTPTN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNI 238
           R+ L+FSAT+  AI  +A    K   R+ IAS++ +   I+     +  L+ ++  + ++
Sbjct: 180 RQTLLFSATLDTAIEKIATRLLKMPKRIQIASQHAKLDHIEQRMHYVDDLTHKNRLLDHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K AIVF +T+         L+    +  A+ G+++Q+ER+  L  +R GR ++ 
Sbjct: 240 LCDTTIKQAIVFTATKRDADSLADNLSAQGHKAAAMHGDMTQRERTRTLTGLRQGRLKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V           +R
Sbjct: 300 VATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDGIHLKR 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R       ++  P +E   +    R   D            K              A 
Sbjct: 360 IERFTGNHFEFQVVPGMEPRTKPRFSR--NDDKSGKRPSSAAHKTRRSWPNDASTRTTAQ 417

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           GF      G    E   P +  + R   RD
Sbjct: 418 GF-----RGDKKSEFSQPFARDTRRRPLRD 442


>gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
          Length = 523

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNRIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
 gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
          Length = 523

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSAELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     ++I  + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADENIHSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|194224511|ref|XP_001501169.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Equus caballus]
          Length = 724

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 242 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 301

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 302 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 358

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 359 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 418

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 419 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 478

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 479 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 539 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 598

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 599 TAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 654

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   + G     E +       R + +
Sbjct: 655 LEKGKEGPNHEPERSWFQTKEERKKEK 681


>gi|327403899|ref|YP_004344737.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319407|gb|AEA43899.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 375

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 184/373 (49%), Gaps = 2/373 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+   + +AL E  Y   T +QE  +   L+ KD+   AQTG+GKT AF L + 
Sbjct: 1   MQFDELNLLPHLLDALKELEYTTPTPIQEQSIPSLLQGKDLFGCAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +            L +APTRELA Q+    +     + +   V  GGV+ +++  
Sbjct: 61  QHLDPDGQ-VKGKRPIRCLVLAPTRELANQINDSFKSYGKHSKLRSMVIFGGVNQNKQVN 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    + +S +   VLDEAD MLD+GF  DI+ IL   PK 
Sbjct: 120 QLNAGIDILVATPGRLLDLMNQGHIQLSKITHFVLDEADRMLDMGFIHDIKKILPRLPKN 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ + FSATISP I  LA     D V V +   +     ++     V  +D+ N +  ++
Sbjct: 180 KQNIFFSATISPTIMELAGTILFDPVNVRVTPVSSTAEIVEQFVYYVEKADKRNFLKQLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +     +AIVF  T+    R  + L +   +  A+ G+ SQ  R  AL   ++      I
Sbjct: 240 KTENISHAIVFTRTKHGADRVARELTKSGLKAEAIHGDKSQNARERALAGFKNRTVSFLI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+  LE VI+ E+    E  +HR GRTGRAG  G++  +     +   + +
Sbjct: 300 ATDIASRGIDIDLLEYVINFEIPEVAETYVHRIGRTGRAGASGIAYTLCSSEEKAYLKAI 359

Query: 360 FREANVSVVWEPA 372
            +  N  +     
Sbjct: 360 QKLINQQIPERTL 372


>gi|332306838|ref|YP_004434689.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174167|gb|AEE23421.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 428

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 187/368 (50%), Gaps = 1/368 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +A+   GY  +T +Q+  +    R +DVL SAQTG+GKT AF + +   +L +
Sbjct: 7   DLAPALQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPILQQML-D 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + +    A+ + PTRELA Q+   +      T + V    GGV +  +   L+ G 
Sbjct: 66  KPKETVSGTTRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASKLKAGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL +H+  K + +++++ VVLDEAD MLD+GF  D+  +L      R+ L+F
Sbjct: 126 DIVISTPGRLLEHMTLKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATISP +  LA    K+   +     N     + +    V+  D+      +L      
Sbjct: 186 SATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLAEQNWY 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST+    +    L            + SQ  R  A+   +  + +V IAT+VAA
Sbjct: 246 QVLVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQVLIATEVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L+ V++  L   PE+ +HR GRTGRAG++G ++  + +  +R  ER+ R  N 
Sbjct: 306 RGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREEERTVERIERLINC 365

Query: 366 SVVWEPAP 373
            +     P
Sbjct: 366 KIKRISRP 373


>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 517

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 8   LSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLHSMP 67

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 68  PVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALKSG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 128 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 188 FSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L++     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 248 FQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +   
Sbjct: 308 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIK 367

Query: 365 VSVVWEPAPSVE 376
             V  E  P  E
Sbjct: 368 RPVPQEVIPGFE 379


>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 129/409 (31%), Positives = 208/409 (50%), Gaps = 3/409 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + +N   +  S   AL + PTRELA Q+   +        V V    GGV +  + + L
Sbjct: 63  -MFDNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ I+ +  K R+
Sbjct: 122 KRGADIIVATPGRLLEHLQACNLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++ S+N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +AT
Sbjct: 242 KNWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRALVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R    + +
Sbjct: 302 EVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                +     P  E        + +Q        Q  E      ++A+
Sbjct: 362 LIGKQLRRITVPGYEVGSRELLIKQIQKRRSFAKKQQREDNTGAQMIAE 410


>gi|222096052|ref|YP_002530109.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
 gi|221240110|gb|ACM12820.1| ATP-dependent RNA helicase [Bacillus cereus Q1]
          Length = 451

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  
Sbjct: 175 DSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 484

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     D      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S+L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPQEVIAGFE 378


>gi|330951359|gb|EGH51619.1| helicase [Pseudomonas syringae Cit 7]
          Length = 629

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 216/462 (46%), Gaps = 15/462 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
               +        + I   +A++    P   +       +         D          
Sbjct: 368 TKQKIADGDLMGFD-ITAVEAEK----PEVRERPDVRNSRGARPARGDGDKNNGG----- 417

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             R       +  P +  +  +R     R  K   G+  + +
Sbjct: 418 -RRDKGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQ 458


>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           +   I  A+SE+GY + T +Q   +   L   D+L  AQTG+GKT  F L L   L    
Sbjct: 8   LSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQRLSAMP 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +      AL +APTRELA QV   +        +  A   GGV ++ +   L+ G 
Sbjct: 68  RQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQITLLKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH++   +N+ H++ +VLDEAD MLD+GF  DI  +L + P KR+ L+F
Sbjct: 128 DILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPPKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  I  LA +   +   + +A  N     I  +   V    +   + ++++ H  K
Sbjct: 188 SATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHLIKTHQWK 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++  + L       +A+ G  SQ  R+ AL   +DG+    IATD+AA
Sbjct: 248 QVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTALIATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + +     + R    
Sbjct: 308 RGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHDIERFIKR 367

Query: 366 SVV------WEPAPSVE 376
            +       +EP P+ +
Sbjct: 368 EIPVEVIAGFEPDPTAK 384


>gi|157150549|ref|YP_001450886.1| DEAD-box ATP dependent DNA helicase [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 523

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 140/448 (31%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L +  ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLDQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase domain-containing protein [Bacteroides
           salanitronis DSM 18170]
 gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
           18170]
          Length = 418

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 196/378 (51%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFTELNLEESVLDALDAMNFKECTPVQEQTIPVILEGRDLIGVAQTGTGKTAAYLLPVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + L   +    PA A   + +APTRELA Q+ +++E       V          G+   +
Sbjct: 61  NQL---SKGGYPADAINCVIMAPTRELAQQIDQQMEGFSYFMPVSSVAIYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA++   D   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAQSILHDPAEV-KLAVSKPADKIIQAAYICYEAQKLGIIE 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ R    +  I+F S++  V   TK L      V  +  +L Q +R   +   R+GR  
Sbjct: 237 SLFRQQEPERVIIFASSKLKVKEVTKALKRLKLNVGEMHSDLEQSQRDEIMHEFRNGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +N Q R 
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSENEQTRF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +   P P+
Sbjct: 357 KQIEDFLGKEIYKLPVPA 374


>gi|15030137|gb|AAH11321.1| Ddx27 protein [Mus musculus]
          Length = 572

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 2   NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A+    L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 62  PRQ---AAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 118

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD+MLD  F + ++ I+      R+ ++
Sbjct: 119 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADKMLDEYFEEQMKEIIRMCSHHRQTML 178

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 179 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMR 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 239 TFTDHVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 299 DVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 358

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M             A   
Sbjct: 359 AAKAPVKARILPQDVILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQ----IDTAQRL 414

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 415 LAKGKETADQEPERSWFQTKEERKKEK 441


>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
 gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
          Length = 458

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 196/362 (54%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL E+GYV+ + +QE  +   L  +DVL  AQTG+GKT AF L +   L+  +
Sbjct: 20  LSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQNLMKPS 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        +L + PTR+LA+Q+    +   ++T V  AV  GGVS + +  +L+ G  
Sbjct: 80  EKKYSKRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEELRRGID 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++++++  VLDEAD MLD+GF  D++ I+   P +++ L+FS
Sbjct: 140 ILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVRKQTLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L      +  RV +   +     ID     V   ++ + +V +L +    +
Sbjct: 200 ATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLNHEDITS 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L ++     A+ G+ SQ  R  AL   + G  +V +ATD+AAR
Sbjct: 260 TLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQVLVATDIAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  VI+ +L + PE  +HR GRTGRAG  G ++       +   + + +    +
Sbjct: 320 GIDIEELSCVINFDLPNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYVKDIEKLTGKA 379

Query: 367 VV 368
           + 
Sbjct: 380 IP 381


>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 578

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 4/370 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I  A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       S        AL + PTRELA QV   +        +   V  GGV ++ + 
Sbjct: 62  RLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   P+
Sbjct: 122 ERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQ 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA +  K+   + +   N     I      V    +   +++I
Sbjct: 182 SKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ H     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G+ R  
Sbjct: 242 IQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ DL  V++ E+ + PE+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMME 361

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 362 IERFTKQEIP 371


>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
          Length = 577

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 4/370 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I  A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       S        AL + PTRELA QV   +        +   V  GGV ++ + 
Sbjct: 62  RLAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   P+
Sbjct: 122 ERIKRGVDVLVATPGRLLDLQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQ 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA +  K+   + +   N     I      V    +   +++I
Sbjct: 182 SKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ H     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G+ R  
Sbjct: 242 IQEHDWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ DL  V++ E+ + PE+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFMME 361

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 362 IERFTKQEIP 371


>gi|221141602|ref|ZP_03566095.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751962|gb|ADL66139.1| ATP-dependent RNA helicase DEAD box family protein [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 506

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  + FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTILFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|254498821|ref|ZP_05111531.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
 gi|254351952|gb|EET10777.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
          Length = 418

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY   + +Q   +   LR  D+L SAQTG+GKT +F L +   L   N  
Sbjct: 10  EPLLRAVSESGYNEPSPIQAQSIPTILRGNDLLASAQTGTGKTASFVLPILQRL--HNQP 67

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + ++    L + PTRELA QV   +        +  AV  GGV +  +   L+ G  I+
Sbjct: 68  RAKSNHTKVLILTPTRELAAQVHESIRQYGKHLSLRSAVVFGGVKISPQMMKLRGGVEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  + + +  S +  +VLDEAD MLD+GF  DI+ I++  PK+R+ L+FSAT
Sbjct: 128 VATPGRLMDLYQQRAIQFSDVNTLVLDEADRMLDMGFIHDIKRIINLLPKERQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S AI TLAK      V +++A  N     +      V  + +   + +++  +     +
Sbjct: 188 FSEAIRTLAKGLLNKPVEIDVAPRNTTAIAVKQTVHPVDKNRKHALLSHLIHKNKWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  + LAE      A+ G  SQ +R+  L   + G   + +ATD+AARGI
Sbjct: 248 VFSKTKHGANKLVQQLAEEHIYAAAIHGNKSQSQRTKVLADFKSGELHILVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++  +   + + + +     + 
Sbjct: 308 DIDQLPCVVNYDLPQVAEDYVHRIGRTGRAGASGSAISLVCADEVGQLQAIEKLIKRKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIEIEDFE 375


>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 455

 Score =  210 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 196/380 (51%), Gaps = 8/380 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q + +AL  +GY   T +Q   + P L  +D++  AQTG+GKT AF L  
Sbjct: 1   MTQFTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  + D+ SP  +   L +APTRELA Q+    +   A  G+ V   +GG SV+++R
Sbjct: 61  IDRL-RDADKQSPFKSCRMLILAPTRELAGQIADSAKDYGALAGLKVHSIVGGTSVNKDR 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D I  K   +  ++ ++LDEAD+MLDLGF   +  I +  P 
Sbjct: 120 NKLHRGTDILVATPGRLLDLIDQKAFTLDKVEILILDEADQMLDLGFIHALRKISELVPD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+   I  L   Y ++ V+V++  E+     ID    +V   ++   +  I
Sbjct: 180 DRQTLFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAERIDQYLFMVQQDEKQTLLEMI 239

Query: 239 LRYHG-----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           L          +  ++F  T+    R  K L +      A+ G  SQ +R  AL   +  
Sbjct: 240 LSERHQVPGKFERVLIFARTKHGCDRIVKKLGQSGIPANAIHGNKSQPQRERALDEFKRA 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARGID+P +  V++ EL + PE  +HR GRT RAGR G+++    ++ +
Sbjct: 300 KTPILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGRDGVAIAFCAEDER 359

Query: 354 RRAERLFREANVSVVWEPAP 373
              + + ++ +      P P
Sbjct: 360 DYLKDIRKKTDAEFERLPLP 379


>gi|254445656|ref|ZP_05059132.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198259964|gb|EDY84272.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 426

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 191/371 (51%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +ALSE G+   T +QE  +   L  +D++ SAQTG+GKT AFGL +   ++   
Sbjct: 35  LSEPINKALSELGFEKPTPIQEQAIPIVLEGRDLIGSAQTGTGKTAAFGLPILQRIV--- 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P      L + PTRELA QV   L       G+ + +  GGV    + + ++ GA 
Sbjct: 92  ----PGKPFQCLILEPTRELAAQVEEALTVFAKNLGIKIGLIYGGVKYGGQLKMMEGGAE 147

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRMLMF 185
           I+V TPGRL DH+    L++  +  +VLDE D MLD+GF  D+   + +    +R+ L+F
Sbjct: 148 IIVATPGRLLDHLGQGNLSLKQMDYLVLDEVDRMLDMGFLPDVKRIVQNYCSAERQTLLF 207

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT+  AI TL     K+   V I         + +    V    +   ++ +L     +
Sbjct: 208 TATMPAAIKTLTGWVLKNPAVVEIGKNRSAAETVSHAFYPVVERQKYKLLLELLERTHYE 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+ +    T+ L     +V AL  + SQ ER+ AL+  +DGR  V +ATD+AA
Sbjct: 268 SVLIFTRTKFNADMITRRLERLDHKVAALHSDRSQSERTAALKGFKDGRYEVLVATDIAA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E+ +HR GRTGRA ++G +  ++ ++  + A  +      
Sbjct: 328 RGLDIAGVTHVINYDVPLHAEDYVHRIGRTGRASKEGDAFTLLTEDEVKNAAAIEHFIGK 387

Query: 366 SVVWEPAPSVE 376
            V  +     E
Sbjct: 388 KVERKKLDGFE 398


>gi|167036018|ref|YP_001671249.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862506|gb|ABZ00914.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 626

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +       +V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITQG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIERV 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQRIQ 373


>gi|319651055|ref|ZP_08005189.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
 gi|317397225|gb|EFV77929.1| ATP-dependent RNA helicase [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 133/532 (25%), Positives = 242/532 (45%), Gaps = 67/532 (12%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+   Y   T VQ  ++   ++ +D++V AQTGSGKT +FG+ ++  +  E
Sbjct: 10  HVSEEIKRALAVLKYETPTEVQSEVIPLAMKNQDLVVKAQTGSGKTASFGIPVSDMVEWE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P A+ + PTRELAVQV  ++  +     +      G     +++ +L+   
Sbjct: 70  EKK------PQAIILTPTRELAVQVREDITNIGRFKRIKAVAVYGKEPFSKQKDELKQKT 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI  + L +  +K +++DEADEML+ GF D++E I+   P  R  ++F
Sbjct: 124 HVVVGTPGRVMDHIERETLILDQIKYLIIDEADEMLNRGFIDEVEAIIKELPSNRVTMVF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   Y KD +++ I S       I++  + V   ++ + + ++       
Sbjct: 184 SATLPKDVENLCHKYMKDPIQIKIESTKVTADTIEHSLIEVREEEKISLLKDVTVVENPD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC T+  V      L +  +    L G L Q++R + ++  + G  R  +ATDVAA
Sbjct: 244 SCLIFCRTKEHVDTVYSELDKAGYPCERLHGGLEQEDRFSVMEGFKLGNFRYLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ ++    E+ +HR+GRTGRAG KG ++        +  + + R    
Sbjct: 304 RGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTPFEGKFIKAIERYICF 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +    APS   +    A               +EK     ++  +   +I    +++H 
Sbjct: 364 DLPAREAPSHLEVAGGKA-------------AFEEKLNNRRIVRNNKTARINQDIMKLHF 410

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
            G                                              G K+K  A   +
Sbjct: 411 TG----------------------------------------------GKKKKIRAVDFV 424

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD--KGIQLKY 535
             + +  G+    IG I +   +++V++      L+ + ++    KG +LK 
Sbjct: 425 GTIAKIPGVTADDIGIITIHDQMSYVDILNGKGSLVLQAMENATIKGKKLKV 476


>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 454

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 190/376 (50%), Gaps = 5/376 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A++  GY   T +Q+  +   +   D++ +AQTG+GKT AF L    
Sbjct: 2   TFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P   P  L + PTRELA Q             +     +GG+    + R 
Sbjct: 62  RL--STPSSVPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     ++V TPGRL DH+    + ++ L+ +VLDEAD MLD+GF +D+E I+ ++P++R
Sbjct: 120 LSAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + LMF+AT+   +  LA+   ++  R+ +A     H  I+ R  +      +   + +++
Sbjct: 180 QTLMFTATMGTTVLKLAEKMLRNPQRIELAVRTSSHELIEQRLHVADNLGHKKELLRHLV 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G   AI+F +T+       + L+        L G+++Q  R+  ++ MR G  R+ +
Sbjct: 240 SDKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++  +  +     ER+
Sbjct: 300 ATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLERI 359

Query: 360 FREANVSVVWEPAPSV 375
            R     +  +    +
Sbjct: 360 ERFIGKKLPEQNIEGL 375


>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
 gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
           HTCC2501]
          Length = 422

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 193/379 (50%), Gaps = 5/379 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + I  AL +  Y   T +Q   +   L  +DV+ SAQTG+GKT AF + +  
Sbjct: 2   TFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL + PTRELA+Q+G  L      TG+   V  GGV   ++   
Sbjct: 62  HLERDRRYGGKRGVVNALIVTPTRELAIQIGESLTAYGHYTGIRNTVIFGGVKQGKQVEA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +    +++S ++  VLDEAD MLD+GF  DI  I+   P +R
Sbjct: 122 LRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRMLDMGFIHDIRKIIARLPAER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I +L++    D V+V ++  +     I         SD+++ +++IL+
Sbjct: 182 QSLFFSATMPDDIVSLSRKILSDPVKVAVSPVSSTAETIRQYLYYTNKSDKNDLLLHILK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+    R  K L +      A+ G  SQ +R  AL   +DG+ RV +A
Sbjct: 242 DPDMDQVLLFARTKHGADRIVKNLGKKKISAAAIHGNKSQNQRQKALGQFKDGKVRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ ++ +  E  +HR GR+GRAG +G+S+ +           + 
Sbjct: 302 TDIAARGIDIDQLRYVVNFDIPNVAETYVHRIGRSGRAGEEGVSISLCEPEENAYIRDIE 361

Query: 361 REANVSVVW---EPAPSVE 376
           +  ++ +      P P  E
Sbjct: 362 KLIDLKIERVEDHPFPQTE 380


>gi|282917430|ref|ZP_06325183.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
 gi|282318632|gb|EFB48989.1| DEAD-box ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus D139]
          Length = 506

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 231/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV   L       GV V    GG+ + R+ 
Sbjct: 61  IEKVVGKQ-------GVQSLILAPTRELAMQVAERLREFSRGQGVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 174 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 354 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 412

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 413 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 463


>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 492

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 191/366 (52%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   T +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 21  LSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSRGN 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   ++       +  AV  GGV +  +   L  G  
Sbjct: 81  R--AQAKKVRALVLTPTRELAAQVAESVDTYGKYLPLKSAVVFGGVGIGPQISKLGKGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +N + L+ +VLDEAD MLD+GF  DI+ IL + P KR+ LMFS
Sbjct: 139 ILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQNLMFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++    +V    +  A++++++ +  + 
Sbjct: 199 ATFSDDIRKLAKGLVNNPVEISVTPRNATAKSVEQYIYMVDQKQKTAALIHLIKQNDWQQ 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 259 VLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLVRVLVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +    + R    +
Sbjct: 319 GIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIERLIKKN 378

Query: 367 VVWEPA 372
           +  +  
Sbjct: 379 IPRKEV 384


>gi|26991657|ref|NP_747082.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 626

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 188/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +       +V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERV 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQRIA 373


>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 415

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 203/368 (55%), Gaps = 2/368 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + I +A+ E GY+N T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L         A    AL + PTRELAVQ+G+  +     T +      GGVS + +   
Sbjct: 62  QLHRIVGSSKKAKQIRALIVTPTRELAVQIGQSFDTYSKYTNLTQLTIFGGVSQNPQVDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  ++V TPGRL D  +   L+++HL  +VLDEAD+MLD+GF +D++ I+  +PK R
Sbjct: 122 LKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQMLDMGFINDVKKIVKLTPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA+ + +D  +V ++  +    +++ R   V  +++ N +  +++
Sbjct: 182 QTLLFSATMPLAIRELAEMFLQDPEKVEVSPVSSTAENVEQRVYFVDKTEKRNLLYRLIK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N +VF  T+       K L +      A+ G+ SQ  R   L   ++    V +A
Sbjct: 242 EENLSNVLVFSRTKHGADNVVKALRKKNIPAEAIHGDKSQNARQRVLDAFKNKEVGVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L + PE  +HR GRTGRAG  G+++    ++ +   + + 
Sbjct: 302 TDIAARGIDIEQLPYVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCGKDEEPYWKDIK 361

Query: 361 REANVSVV 368
           +   V V 
Sbjct: 362 KLIKVDVK 369


>gi|260175083|ref|ZP_05761495.1| putative ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|315923311|ref|ZP_07919551.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697186|gb|EFS34021.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 2/368 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +A+ E+GY   T +Q   +   L ++D+L  AQTG+GKT +F + + 
Sbjct: 1   MTFKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N   +      AL +  TRELA+Q+   +      T V   V  GGV+   +  
Sbjct: 61  QHLQM-NKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+   I +L  +  K+ VR++I  ++     I+     V   ++   +V+IL
Sbjct: 180 KQTLFFSATMPDTIISLTNSLLKNPVRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++ +VF  T+ +  +  K+L +      A+ G  SQ  R  AL   + G+ RV +
Sbjct: 240 QKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L LVI+ +L   PE  +HR GRTGRAG  G ++    Q  ++    +
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359

Query: 360 FREANVSV 367
            +     +
Sbjct: 360 QKLTGKKL 367


>gi|167644899|ref|YP_001682562.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167347329|gb|ABZ70064.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 479

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 132/429 (30%), Positives = 210/429 (48%), Gaps = 14/429 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + + +AL+++GY   T +Q   +   +  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTQFTDLGLAKPLLKALTDKGYTVPTPIQAQAIPLVMSGRDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L AE+ + +P      L ++PTRELA Q+           G+ VA   GGV    + 
Sbjct: 61  LHRL-AEDKKPAPRRGFRCLVLSPTRELATQIAESFRDYGKHMGLTVATIFGGVKYGPQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +VV TPGRL DH+  K  +++ ++  VLDEAD+MLDLGF   I  I    PK
Sbjct: 120 KALAAGVDVVVATPGRLMDHLGEKSAHLNGVEIFVLDEADQMLDLGFVVPIRKIASQLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA    K+  +V I         ID   + +    +   +  +
Sbjct: 180 ERQNLFFSATMPSEIGKLAGELLKNPAQVAITPSATTVERIDQSLIFIEAQRKRPLLAEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + +IVF  T+    R  K L     +  A+ G+ +Q +R  AL   + G+ +  
Sbjct: 240 LADKSVERSIVFTRTKRGADRVAKYLVASGIEAAAIHGDKTQGQRERALAAFKAGQVKAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+ D+  V + EL + PE+ +HR GRT R G++G+++     + +   + 
Sbjct: 300 IATDIAARGIDVNDVSHVFNYELPNVPESYVHRIGRTARKGKEGIAISFCADDERNLLKD 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    ++     P+ +    R+ + +       D +   EK  VD   A  DP     
Sbjct: 360 IQKATRQTI-----PTFD---RRNDKNLAAAAAVADKLAPPEK-YVDPRRA--DPRNNVP 408

Query: 419 GFLRIHRAG 427
             LR  R  
Sbjct: 409 SELRRQRNR 417


>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 411

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 210/372 (56%), Gaps = 4/372 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  +++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWE 370
           + +    ++  E
Sbjct: 372 IEKLIKRALPLE 383


>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
          Length = 408

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 210/372 (56%), Gaps = 4/372 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A++++GY   T +Q   +   L  +DV+ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAVVFGGVDMNPQM 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  +++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 AELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVAEGDKQAAVVKL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    K  IVFC+++   SR  + +        A+ G+ SQ ER  AL   + G     
Sbjct: 252 IRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  + E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWE 370
           + +    ++  E
Sbjct: 372 IEKLIKRALPLE 383


>gi|114682563|ref|XP_001166284.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 2 [Pan
           troglodytes]
          Length = 745

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 173 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 232

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 233 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 289

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 290 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 349

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 350 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 409

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 410 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 469

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 470 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 529

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 530 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 585

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 586 LEKGKEAVVQEPERSWFQTKEERKKEK 612


>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
 gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 462

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 203/456 (44%), Gaps = 5/456 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY+  T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+   
Sbjct: 8   LNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQRLVQNE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L++G  
Sbjct: 68  PHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMMKLRSGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++ + + +A  N     +      V    +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYVHFVDKKRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHDIERLLKKE 367

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +        E  +      I  DP+      G  +           P +  +G  +    
Sbjct: 368 IPRIAIEGYEVDKS-----IKADPIQNGRQGGGGRGQGGGGGRSQQPRRSESGAPKASGK 422

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                 +  P      R      +   +     R  
Sbjct: 423 PPRRSGDAKPAGENPWRSGEAKPAGEGQRRRKPRKP 458


>gi|104783960|ref|YP_610458.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 634

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 187/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPGG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        + A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMNPQVQAMA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++S ++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIERV 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIP 373


>gi|121601761|ref|YP_989161.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120613938|gb|ABM44539.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 471

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 127/397 (31%), Positives = 207/397 (52%), Gaps = 9/397 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G      +QE  +   L+ +D+L  AQTGSGKT+AFGL + S +L   
Sbjct: 24  LSTLLIKNLLNAGISEPKPIQEQAIPVMLKGRDILGIAQTGSGKTLAFGLPILSQILTFG 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+ SP +A  AL + PTRELAVQ+   +  +     +   + +GGVS  ++ + +  G  
Sbjct: 84  DKRSPKTA-RALILVPTRELAVQIEEMISAVVKGAHLSTCLIVGGVSRFKQIKRMGAGVD 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +R K +++S  + +VLDEAD MLD+GF +D+  I     K+ +  +FS
Sbjct: 143 VVIATPGRLMDLVREKFVDLSRSRFLVLDEADRMLDMGFINDVRRIAKLLCKEHQTALFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     + V++ +  +     +I  +   V  +++ N +  +L      +
Sbjct: 203 ATMPKEIKELANGLLNEPVKIEVVPQGTTAVEITQKLYCVPKNEKRNILNRLLVNPDLIS 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ L      V  + G  SQ  R +AL+  R+G  +V +ATD+AAR
Sbjct: 263 VIVFIRTKHGADAITRYLKNMGHAVATIHGNKSQNARQSALKAFREGSVKVLVATDIAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----RRAERLFR- 361
           GID+P +  VI+ +L  + E+ +HR GRTGR G  G ++ +  +  +    R  ER+ R 
Sbjct: 323 GIDIPGVSHVINYDLPEDAESYVHRIGRTGRNGASGDAITLFDEESEESRLRAVERIIRM 382

Query: 362 ---EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
                NV + +E  P      E D +   ++  F  S
Sbjct: 383 KLTRENVPLQYETYPEKPFTLESDEKENSKERRFKKS 419


>gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 413

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 192/366 (52%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+   
Sbjct: 12  LADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPILHLLMQSK 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A  P  L + PTREL  QV   ++     T +   V  GGV+++ +   L+    
Sbjct: 72  PEARKAGRPRCLILTPTRELTAQVAESVQTYGKHTSLTSMVMFGGVNINPQISALRKPLD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    +   V++   N     +     LV    + + I +I+R  G   
Sbjct: 192 ATFSDEIRSLARGVLNNPGEVSVTPRNTATELVTQTVHLVEQHHKRDLISHIIRESGWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLVKDGLTAAAIHGNKSQSARTRALAGFKDGTVTVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R    +
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDNSEIKLLKDIERLIKKT 371

Query: 367 VVWEPA 372
           +  +P 
Sbjct: 372 IERKPV 377


>gi|302875685|ref|YP_003844318.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689114|ref|ZP_07631560.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578542|gb|ADL52554.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 472

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 125/423 (29%), Positives = 209/423 (49%), Gaps = 9/423 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+ + + ++L    +   T VQE ++   L   D++V AQTGSGKT AF + +  
Sbjct: 4   FKDF-NLNESMLKSLKLMNFDVPTEVQEKVIPLALSGDDIIVKAQTGSGKTAAFAIPIIE 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+A        +A  AL + PTRELAVQV      L     +      G   +  ++  
Sbjct: 63  NLIANE------NAVQALVLTPTRELAVQVQETFSTLGVYKKIKTVAVYGKQPMSIQKNQ 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HIVVGTPGR  DHI    L+IS +K +++DEADEML++GF D++E I+   PK R
Sbjct: 117 LSQRVHIVVGTPGRTLDHIEKGNLDISSVKYLIIDEADEMLNMGFIDEVENIIKKVPKLR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+S  I  L   Y      + +  E    + I+ +   +  + + N + ++++
Sbjct: 177 QTLMFSATLSYEIKELINKYMFSPKLIELTPETLTVAKINQKYYEIDENLKYNLLEDLIK 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC T+ +V+     +    + V  + G++ Q +R +AL+  ++ + +  +A
Sbjct: 237 TEDITKAILFCRTKKNVAYLASRMRVSSYSVTEIHGDMLQNDRLSALKAFKEDKFQFIVA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ ++  V + ++    E  +HR GRTGRAG  G ++  + +   +  + + 
Sbjct: 297 TDVAARGIDVNNVSHVFNYDIPLELEAYVHRIGRTGRAGSSGEAITFVTRYEDKFLKAIE 356

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAA 418
              N+ +     PS E +     +        +++   D  K+      K       I A
Sbjct: 357 EFINMKIPQGIHPSKEEVLNAPKKEFKPSVAKINNKSSDIIKIHINGGKKKKIRRGDIVA 416

Query: 419 GFL 421
             +
Sbjct: 417 SLI 419



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL--RRTVKLD 528
           ++ G K+K     ++  L  S G+    IG I +    ++V++       L         
Sbjct: 401 INGGKKKKIRRGDIVASLIHSGGVPADDIGVIDIFDTYSYVDILNGSGKKLLSMHPEINL 460

Query: 529 KGIQLKYLGGEK 540
           KG  +K    +K
Sbjct: 461 KGKSIKIQRAKK 472


>gi|114682561|ref|XP_001166253.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 1 [Pan
           troglodytes]
          Length = 737

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 165 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 224

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 225 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 281

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 282 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 341

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 342 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 401

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 402 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 461

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 462 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 521

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 522 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 577

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 578 LEKGKEAVVQEPERSWFQTKEERKKEK 604


>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
           DSM 265]
          Length = 412

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 198/378 (52%), Gaps = 6/378 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     I +AL E GY + T +Q   +   L+  D+L  AQTG+GKT AF + +   
Sbjct: 3   FSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E+          +L + PTRELA+Q+G         T +   V  GGV+ + +   L
Sbjct: 63  L-GESRVQGRIKKIRSLIVTPTRELAIQIGESFSAYGRHTPLTNTVIFGGVNQNPQISRL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+V TPGRL D +    +N+  ++ +VLDEAD MLD+GF  DI  +L + PK+++
Sbjct: 122 KNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRMLDMGFIHDIRKVLAALPKEKQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+ P I  L+     +  ++++   +     I+ +   V   ++   +V++L+ 
Sbjct: 182 SLFFSATMPPDIVRLSSTILHNPAKISVTPPSSTVEIINQQIYFVDKGNKSPLLVHLLKN 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF  T+    +  K L ++     A+ G  +Q  R  AL   +  + RV +AT
Sbjct: 242 PDITTALVFTRTKHGADKVVKHLLKNGITAEAIHGNKAQNARQRALSNFKSQKTRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
           D+AARGID+ +L+ VI+ + S+ PE  +HR GRTGRAG  G ++       +   +  E+
Sbjct: 302 DIAARGIDVDELQHVINYDTSNIPETYVHRIGRTGRAGASGTAISFCDAEEKAYLKDIEK 361

Query: 359 LFREANVSVVWEPAPSVE 376
           L  ++   V   P P V+
Sbjct: 362 LIAKSIPVVEEHPFPLVD 379


>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 506

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 191/376 (50%), Gaps = 3/376 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I +AL+E GYV  T +Q   + P +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L +E   + +P      L ++PTRELA Q+                V  GGV++ R+
Sbjct: 61  LHRLASETPAKRAPRRGCRVLVLSPTRELASQIADSFRDYGKFLPFSTTVVFGGVTIGRQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L NG  ++V TPGRL D +  + L++  ++ +VLDEAD+MLDLGF   ++ I+   P
Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQMLDLGFIHALKRIVTLLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L FSAT+   I TLA  Y +D V+V +         ++ R + V+   +   +  
Sbjct: 181 KARQSLFFSATMPKNIATLAAQYLRDPVQVAVTPVATTAERVEQRVIHVSTGAKQALLGT 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       +VF  T+    R  + L +      A+ G  SQ +R  AL   R G  RV
Sbjct: 241 ILRDESIDRVLVFTRTKHGADRVVRGLEKVGIGSAAIHGNKSQPQRERALAAFRAGTCRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G+++    +  +    
Sbjct: 301 LVATDIAARGIDVEGVTHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNEEERAYLR 360

Query: 358 RLFREANVSVVWEPAP 373
            + R     V     P
Sbjct: 361 DIERLTRQKVPEMAIP 376


>gi|189499873|ref|YP_001959343.1| DEAD/DEAH box helicase domain-containing protein [Chlorobium
           phaeobacteroides BS1]
 gi|189495314|gb|ACE03862.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
           BS1]
          Length = 418

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 195/371 (52%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +AL E GY + T +Q   +   L  +D+L  AQTG+GKT AF + L   LL  
Sbjct: 7   DLIDPILQALREEGYSSPTPIQAQAIPMILEGRDLLGCAQTGTGKTAAFAIPLLQ-LLHA 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA+Q+G         TG+   V  GGV+ + +   L+ G 
Sbjct: 66  RKTNEKKKKIRALVVTPTRELAMQIGDSFSAYGRHTGLTNQVIFGGVNQNPQTASLRKGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + P+K++ L F
Sbjct: 126 DIVVATPGRLLDLMNQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPQKKQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA    K+  +V++   +     I      V   +++  +V++L+    K
Sbjct: 186 SATMPTEIVRLAGTILKNPAKVSVTPVSSTVDTIRQAVYFVDKGNKNRLLVHLLKGEEIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L +H  +  A+ G   Q  R  AL+  ++   RV +ATD+AA
Sbjct: 246 TALVFTRTKHGADKVVKFLQKHAVRAEAIHGNKGQGARQRALKNFKEQTTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE 362
           RGID+ DLE VI+ ++S+  E  +HR GRTGRAG KG ++       +   R  E+L  +
Sbjct: 306 RGIDVDDLEHVINFDMSNVAETYVHRIGRTGRAGAKGTALSFCDAGEKEYLRDVEKLIAK 365

Query: 363 ANVSVVWEPAP 373
               +   P P
Sbjct: 366 KIPDIDHHPFP 376


>gi|260576594|ref|ZP_05844582.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259021198|gb|EEW24506.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 453

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 187/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     + + L + GY   T +Q   +   ++ +D++  AQTG+GKT AFGL L
Sbjct: 1   MSTFDSLGLSPKLAKGLEKAGYTKPTPIQLQAIPLIMQGRDLMGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL      +P  +  AL +APTREL  Q+   LE     T V V    GG S+ R+ 
Sbjct: 61  LHRLLDIGHPPAP-RSVRALIMAPTRELVSQISEALEVFTKGTAVKVVTVTGGASLFRQS 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  GA ++V TPGRL D +    L + H   +VLDEAD+MLD+GF   ++ I    P 
Sbjct: 120 ERLARGADVLVATPGRLIDLLDRNALTLEHCGYLVLDEADQMLDMGFIHALKKIAKHLPL 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA+ Y +D V+V +A   +    I          D+   +   
Sbjct: 180 KRQTLLFSATMPKLIEDLAQTYLRDPVKVQVAPPGKPIEAIVQGVHYTPQGDKARLLEEY 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H  + A+VF  T+    +  K+L    F+  ++ G  SQ +R   L   R+G   V 
Sbjct: 240 LKTHPGEMALVFGRTKHGSEKLMKLLVAWGFKAGSIHGNKSQNQRERTLSEFREGALDVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  V + ++ + PEN +HR GRT RAG  G +V           + 
Sbjct: 300 VATDVAARGIDISGVRHVYNYDMPNVPENYVHRIGRTARAGADGKAVAFCAPAEMEEIQA 359

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 360 IEKLLKTRIP 369


>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
 gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
          Length = 484

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 219/455 (48%), Gaps = 26/455 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A++E GY   T +Q   + P L  +DVL  AQTG+GKT AF L +
Sbjct: 1   MTKFSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L +APTRELA QV    +     T +  A+ IGG S   + 
Sbjct: 61  ITLL---GRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLIGGTSFKDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH+    L ++ +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KIIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  ++ +A     +++I    V+   S +       
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ ++ V    K L ++ +Q   + G+L Q  R+  L  
Sbjct: 238 RELLRKLIDAEGEACTNAIIFCNRKSDVDIVAKSLNKYGYQAAPIHGDLDQSHRTKTLDK 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD   R+ +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRDNELRILVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGTAIMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-KMVDVLL 408
              ++  E + R    ++    AP  +A            P   +  + +EK K      
Sbjct: 358 PRDEKNLEDVERLVKETIPRLDAPGGKA-----------APATAEPEKAEEKPKRTRSRR 406

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
            K D  +  A   +   A      +  P +    R
Sbjct: 407 KKDDAPEAKADAPKAEEAQPAEAAKPEPKTDEKPR 441


>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
           sapiens]
          Length = 763

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 112/416 (26%), Positives = 210/416 (50%), Gaps = 8/416 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 460

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 461 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 580

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +  +++
Sbjct: 581 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINTAKRL 636


>gi|165869135|ref|ZP_02213795.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167641387|ref|ZP_02399638.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170704569|ref|ZP_02895035.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177649201|ref|ZP_02932203.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190565289|ref|ZP_03018209.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229603661|ref|YP_002866798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254685050|ref|ZP_05148910.1| ATP-dependent RNA helicase [Bacillus anthracis str. CNEVA-9066]
 gi|254722456|ref|ZP_05184244.1| ATP-dependent RNA helicase [Bacillus anthracis str. A1055]
 gi|254737496|ref|ZP_05195199.1| ATP-dependent RNA helicase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743317|ref|ZP_05201002.1| ATP-dependent RNA helicase [Bacillus anthracis str. Kruger B]
 gi|254751811|ref|ZP_05203848.1| ATP-dependent RNA helicase [Bacillus anthracis str. Vollum]
 gi|254760330|ref|ZP_05212354.1| ATP-dependent RNA helicase [Bacillus anthracis str. Australia 94]
 gi|164715861|gb|EDR21378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167510664|gb|EDR86059.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170130370|gb|EDS99231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|172084275|gb|EDT69333.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190563316|gb|EDV17281.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|229268069|gb|ACQ49706.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
          Length = 447

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSATI   I  LAK Y  +   + + SE      I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 457

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 136/457 (29%), Positives = 218/457 (47%), Gaps = 13/457 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+   + + +A+ ++GY + T +Q+  +   +  KDVL +AQTG+GKT  F L L  
Sbjct: 2   SFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +         L + PTRELA QV   ++           V  GGV ++ +   
Sbjct: 62  RLSETHPKMGKKQ-IRVLVLTPTRELAAQVAESIKTYGKYMKYTSTVVYGGVGINPQLAT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  IV+ TPGRL D    +G++ S L+ +VLDEAD MLD+GF  DI+ ++   PK+R
Sbjct: 121 IRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRMLDMGFIHDIKKLMKMMPKER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA    K+ V V +A EN     I      V  S +   +  +++
Sbjct: 181 QTLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQISQVVHFVDKSRKRELLSQLIK 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +R TK L E      A+ G  SQ  R+ AL   +    RV +A
Sbjct: 241 TKDWRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEIRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL + PE+ +HR GRTGRAG+ G +V ++  +  +    + 
Sbjct: 301 TDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLFDIE 360

Query: 361 REANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +     +       + P P+++A   ++ +   Q     +S              K    
Sbjct: 361 KFIKSEIKKVHIEAFTPDPNIKAEPIQNGRGGGQKRGGGNSRNRSRNTNTSNREHKESSA 420

Query: 415 KIA----AGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           K A    +   +I        +++    +   R R R
Sbjct: 421 KKANTKNSAAAKIGNNIQEKLDKLEKRDMNPNRQRRR 457


>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 513

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 191/366 (52%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 30  LSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLTRGN 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV +  +   L  G  
Sbjct: 90  R--AQAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVVFGGVGIGPQISKLGKGVD 147

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + LN + L+ ++LDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 148 ILVATPGRLLDLFNQRALNFNQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQNLMFS 207

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++     V    +  A++++++ +  K 
Sbjct: 208 ATFSDDIRKLAKGLVNNPVEISVTPRNATAKTVEQYIYQVDQKQKTAALIHLIKQNDWKQ 267

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L  +     A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 268 VLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEVRVLVATDIAAR 327

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +    + R     
Sbjct: 328 GIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDIERLIKQK 387

Query: 367 VVWEPA 372
           +  +  
Sbjct: 388 IPRKEV 393


>gi|212636923|ref|YP_002313448.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 432

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 196/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L        ++A  AL + PTRELA Q+   +        V V   +GGV +  +   L
Sbjct: 63  MLDNPSATQRSNA-RALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL +HI    L++S++  +VLDEAD MLD+GF  DI+ IL +   KR+
Sbjct: 122 KRGADIIIATPGRLLEHIVACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT S  +  LA         +    +N     +      V    +   +  ++  
Sbjct: 182 NLMFSATFSAPVKKLASEMMVKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQKLRRVTVPGYE-VGSRDL 382


>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 510

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 192/384 (50%), Gaps = 3/384 (0%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + + +AL+  GY   T +QE  +   ++ KD+L  AQTG+GKT AF L + 
Sbjct: 16  TTFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPIL 75

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L        P +    L ++PTRELA Q+G   +   A  G  VAV  GGV    + R
Sbjct: 76  HRLAENRIAPKPRT-TRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQER 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G  I+V  PGRL DHI+ K L++S  + +VLDEAD+MLDLGF   I  I+   P K
Sbjct: 135 ALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAK 194

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  LA    KD V+V +  ++     I    V V    +   +  + 
Sbjct: 195 RQNLFFSATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMF 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF  T+    +    L     +  A+ G  SQ +R   L   + G+ RV +
Sbjct: 255 SDPEYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  +  V++ EL   PE  +HR GRT RAG  G ++  +  +  +  + +
Sbjct: 315 ATDIAARGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKDI 374

Query: 360 FREANVSVVWEPAPSVEAIRERDA 383
            +     +      + +A+ + DA
Sbjct: 375 EKVTRQKIPAIDRRNDKALGQLDA 398


>gi|160940589|ref|ZP_02087933.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436549|gb|EDP14316.1| hypothetical protein CLOBOL_05484 [Clostridium bolteae ATCC
           BAA-613]
          Length = 490

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 147/507 (28%), Positives = 230/507 (45%), Gaps = 67/507 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L+  GY + T VQE +L   L  ++V+V +QTG+GKT AF + +   ++ E 
Sbjct: 18  LSGEITETLALLGYEHPTRVQEEVLPHVLAGRNVVVRSQTGTGKTAAFAIPVCEQIVWEE 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL + P+RELAVQV +E+  +  K  + V    GG  + ++ + L+   H
Sbjct: 78  ------NLPQALVLEPSRELAVQVSQEIFRIGRKKRLKVPAVFGGFPIDKQIQTLRQKTH 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DH+R   L ++ ++ +V+DEAD MLD+GF D++  I+   P+KR+ L+FS
Sbjct: 132 IVVGTPGRVMDHVRRGSLKLTGVRYLVIDEADLMLDMGFMDEVRQIVGLLPEKRQTLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA+   KDAV V +  E      I      VA   +  A   +L     + 
Sbjct: 192 ATLDEDVKNLAEETVKDAVSVFLEQEGETPLPIRQSVYGVAQDQKYTAFKRVLMKENPER 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC TR  V    + L         + G++ Q+ER   +   R G  R  IATDVAAR
Sbjct: 252 AMIFCGTREMVQVLFQKLRRDRIFCGMIHGDMEQKERLKNVDAFRRGGFRYLIATDVAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID  D+ LV++ +     E  +HR GRTGR G+ G +  ++ ++  R   +      V 
Sbjct: 312 GIDFEDVGLVVNYDFPMGRETYVHRIGRTGRNGKAGRAASLVTEDEIRTLHKAEAYVGVP 371

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +   P P  E   E+                                      F  + R 
Sbjct: 372 LPVLPCPETEEEEEK-------------------------------------AFWALQRK 394

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                    P       ++         +GGG                 K K  +  ++ 
Sbjct: 395 --------KPDPGPHKGEKLDRSITRLSIGGG----------------RKSKMRSGDIVG 430

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEV 513
            +C   G++ + IG I ++  LTFVE+
Sbjct: 431 AVCSIEGVDAEDIGIIDIRESLTFVEI 457


>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
 gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
           43553]
          Length = 493

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 129/392 (32%), Positives = 211/392 (53%), Gaps = 4/392 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +  ++ ++++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF + +  
Sbjct: 18  TFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPILH 77

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   ++    +T +  AV  GGV +  ++
Sbjct: 78  RLMPLANASASPARHPVRALILTPTRELADQVFESVKRYSKQTPLRSAVVFGGVDIGPQK 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D+E I+   P 
Sbjct: 138 EALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPA 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  L ++Y    V + +A+ N   + I   A  ++   +  A+V++
Sbjct: 198 QRQGLLFSATFSNEIRKLGRSYLNQPVEIEVAARNATATTITQIAYKMSSDAKRAAVVHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G K  IVF +T+   +R  + L     +  ++ G+ +Q +R  AL+  + G   V 
Sbjct: 258 VKSRGLKQVIVFSNTKIGTARLARELERDGVKAESIHGDKTQADRMKALEAFKAGDLEVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +   + +R    
Sbjct: 318 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTPDEERFLLD 377

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           + +     V             R  +R    P
Sbjct: 378 IEKLIKREVPRGTLDLPADAVARSHRRSEDRP 409


>gi|154247132|ref|YP_001418090.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154161217|gb|ABS68433.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 559

 Score =  209 bits (532), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 227/497 (45%), Gaps = 21/497 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N+   + I  AL+E  +V  T +Q   +   L  +D++  AQTG+GKT AF L +
Sbjct: 36  LTSFSNLGLAEPIVRALTEAQHVTPTPIQAEAIPQILAGRDLIGIAQTGTGKTAAFALPI 95

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    R  P  +  AL ++PTREL+ Q+    E       + V++ IGGV + R+ 
Sbjct: 96  LDRLVRHPHRPEP-KSVRALVLSPTRELSGQIVENFEKFGRHANISVSLAIGGVPMGRQI 154

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D +    + +  ++ +VLDEAD+MLD+GF   I  I+   P 
Sbjct: 155 RALSRGVDVLVATPGRLIDLVENHAVKLDQVEVLVLDEADQMLDMGFVHAIRAIVRRLPH 214

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR  L FSAT+  AI  LA +  +D VRV +    +    ++ R +LV  +++   +  +
Sbjct: 215 KRHSLFFSATMPHAIAELAGSMLRDPVRVAVTPVAKTADRVEQRVILVDKANKGQLLAEV 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       A+VF  T+    +  +VLA+      A+ G  SQ +R   L   R+G+ R  
Sbjct: 275 LSTEDIDRALVFSRTKHGADKVVRVLAKAGIAAEAIHGNKSQNQRDRVLAAFREGKIRTL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+  +  VI+ +L + PE+ +HR GRT RAGR+G+++       +     
Sbjct: 335 IATDIAARGIDVTGVSHVINFDLPNVPESYVHRIGRTARAGREGIAISFCDHEERAFLRS 394

Query: 359 LFREANVSVV---------WEPAPSVEAIR--ERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           + +   + +              P +E I   ERD     +     D I    ++     
Sbjct: 395 IEKLIKMQLPSSDRRGAGTRFAVPELEPIILDERD-----ETSERSDYIGRSGRQNPRGQ 449

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLV-SGRDRFRDDSRAFKVGGGSRDNFKGS 466
             +H  E+   G  R  R+    P+          GR            GG      +  
Sbjct: 450 RPRHGDERSGEGRSRAPRSEEGRPQAARAHQPRGEGRPAGGRPEGRPDAGGAQGAGHRAG 509

Query: 467 SWFSLSVGSKQKAEARW 483
                  G  Q+ E   
Sbjct: 510 QPARAE-GRGQRTERGQ 525


>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
 gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 453

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 135/361 (37%), Positives = 206/361 (57%), Gaps = 2/361 (0%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFSPASAPL 76
            GY ++T +Q   +   L  KDV+ +AQTG+GKT AF L L   L+  EN   SPA  P+
Sbjct: 1   MGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLMRHENASASPARHPV 60

Query: 77  -ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ G  ++V TPGRL
Sbjct: 61  RALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRL 120

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DHI  K + ++ ++ VVLDEAD MLD+GF  D++ IL   PK R  L+FSAT SP I  
Sbjct: 121 LDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRTTLLFSATFSPEIKR 180

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L+    + A +F +++ 
Sbjct: 181 LAGSYLQDPVTIEVARPNETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQAFIFSNSKL 240

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
             +R T+ L     +  AL G+ SQ ER  AL+  + G   + + TDVAARG+D+ D+  
Sbjct: 241 GCARLTRALERDGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDVPA 300

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V + ++  N E+ +HR GRTGRAG  G++V ++  +  R    + +     +  EPAP +
Sbjct: 301 VFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHDSRNVADIEKLTKKKIEVEPAPML 360

Query: 376 E 376
           +
Sbjct: 361 D 361


>gi|119510101|ref|ZP_01629241.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465288|gb|EAW46185.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 500

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 224/475 (47%), Gaps = 24/475 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q   E L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L   +
Sbjct: 10  LSQKRVEQLENIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILEQLDVNH 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  AL +APTRELA+QV   +       G+ +    GG S+ R+   L+ G H
Sbjct: 70  ------KAVQALVLAPTRELAIQVHDAINQFVGDEGLRILAIYGGQSIERQMMQLKRGVH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +    L +  +K  VLDEADEML +GF DD+  IL  +PK+R+  +FS
Sbjct: 124 MVVGTPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPKERQTALFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+ P+I  +   + ++   V +       + I+  A L+     +  A+  IL     +
Sbjct: 184 ATMPPSIRMIVNKFLRNPATVTVEQPKASPNKINQVAYLIPRHWTKAKALQPILEMEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F  TR + +  T +L      V    G+LSQQ R   L   R+ + R  +ATD+AA
Sbjct: 244 TALIFVRTRRTAAELTNLLQGAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    
Sbjct: 304 RGLDVDLLSHVINFDLPDSAETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERHNRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQD--------------PLFLDSIQGDEKKMVDVLLAKH 411
           +      P+   I  R  Q++ +               P+  + I+  +   +     + 
Sbjct: 364 NWQLLSIPTRAQIEARHIQKLQEQVKEALTGERLASFLPIVSELIEEYDAHAIAAAALQI 423

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
             ++    +L   ++G+   ++         + R  + S          D+  GS
Sbjct: 424 AYDQTRPAWL---QSGVDPQDDAPSTKPKLAKRRGGESSNDRNRSWNKPDSNGGS 475


>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
 gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
          Length = 483

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/404 (31%), Positives = 209/404 (51%), Gaps = 12/404 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F+  N+   + E++    +   T +Q   +   L  KD++  AQTGSGKT AF + +
Sbjct: 67  FKTFKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPI 126

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L      +        L +APTRELA Q+    + L +  G+  +  +GG+ +  + 
Sbjct: 127 LQSLWHAQQPY------FGLVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQA 180

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    HI+V TPGR+ DH    KG  + +LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 181 RDLMRKPHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIP 240

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR   +FSAT++  I  L +    + VRV ++S+ +   ++    +LV    ++  +++
Sbjct: 241 TKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIH 300

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L    +K+ IVF  T A   R   +     F  V L G+LSQ +R  +L   +   A +
Sbjct: 301 LLNEFMSKSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANI 360

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ +I Q       
Sbjct: 361 LIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYL 420

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           R+       +  E  P  E +   DA  I  D    ++I+  ++
Sbjct: 421 RIESVLGYKLPKEDKPPKEVL---DALHIHVDKATAEAIRQTKE 461


>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 132/377 (35%), Positives = 209/377 (55%), Gaps = 2/377 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   I +AL + GY + T +Q   +   L  KDV+ +AQTG+GKT  + L +  +LL   
Sbjct: 22  LASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQSLLYYA 81

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV  ++      T +  AV  GGV +  +   L+ G
Sbjct: 82  NASMSPARHPVRALILVPTRELADQVYEDVRKYAKYTSLRTAVVFGGVDMSGQTGILRAG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL DHI+ K +N+     +VLDEAD MLD+GF  D++ I++  PKKR+ L+
Sbjct: 142 AEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRMLDMGFLPDLQRIVNLLPKKRQNLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA ++    V V +A +N    ++      +  +D+++A+  +LR H  
Sbjct: 202 FSATFSSEIRKLANSFLDRPVSVEVARQNATADNVTQTVYRIDEADKNDAVEYLLRLHKR 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+A  SR  + L +   +  A+ G+ +Q ER  AL   ++G   V +ATDVA
Sbjct: 262 EQVLIFSNTKAGASRLARQLEKKGLKAAAIHGDKTQAERMAALDAFKEGNITVLVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + +L  VI+ +L    E+ +HR GRTGRAG  G ++ +     ++    + +   
Sbjct: 322 ARGLHIEELPCVINFDLPFVAEDYVHRIGRTGRAGASGEAISLCSAKDEKLLNEIEKLIK 381

Query: 365 VSVVWEPAPSVEAIRER 381
             +     P  E  +E+
Sbjct: 382 RKLPVHSIPDPEIRKEK 398


>gi|195998213|ref|XP_002108975.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
 gi|190589751|gb|EDV29773.1| hypothetical protein TRIADDRAFT_63563 [Trichoplax adhaerens]
          Length = 654

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 188/387 (48%), Gaps = 8/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  +   ++ +G+   T +Q       L  +DV+  AQTGSGKT+A+ L     +  +
Sbjct: 85  SFPDYVMSEINNQGFKLPTPIQAQSWPVGLSGRDVVGIAQTGSGKTLAYVLPSIIHIKNQ 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL + PTRELA QV            +  A   GG     + R+L  G 
Sbjct: 145 PP-LRHGDGPIALILCPTRELAQQVHSVSTTFGRLARINCACIYGGSPKGPQLRELSRGV 203

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I V TPGRL D +  +  N++    +VLDEAD MLD+GF   I+ I+ S    R+ +M+
Sbjct: 204 EICVATPGRLLDFLESRRTNLNRCSYLVLDEADRMLDMGFEPQIKQIIGSIKCPRQTVMW 263

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    I TLA+ + +D V++NI S     N     I          D+   +++ +  
Sbjct: 264 SATWPKEIRTLAREFLRDYVQINIGSSDLTTNHNIKQIVEVCREEEKEDKLCKLLSDILR 323

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF  T+      ++ L    + V+ + G+  Q ER   L   R GR  V IAT
Sbjct: 324 QDEKKTIVFVETKKKSDYLSRRLVRSGWPVLCIHGDKCQSERDRVLSEFRSGRIPVLIAT 383

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AER 358
           DVAARG+D+ D++LVI+ +  +N E+ +HR GRT R+G+ G +      +  R+      
Sbjct: 384 DVAARGLDISDVKLVINYDFPNNSEDYVHRIGRTARSGKTGTAYTFFTASNIRQSPNLIA 443

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           L REAN  +  +     +A R   AQ+
Sbjct: 444 LLREANQPINPDLIQLGDAARAEMAQK 470


>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 438

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 194/375 (51%), Gaps = 6/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E GY   TS+Q+  +   L  KD+L SAQTG+GKT  F L +   L    
Sbjct: 14  LSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLPILQHLSQTP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA QVG+ +        +   V  GGVS++ +   L+ G  
Sbjct: 74  VVVKGKKPVRALILAPTRELAAQVGQNVRNYSQFLRLKSLVVFGGVSINPQMMKLRGGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++   +++S ++ +VLDEAD MLD+GF  DI  ILD  P KR+ L+FS
Sbjct: 134 ILVATPGRLLDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDKLPTKRQNLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +   +   + +A  N     +      V    +   +  ++     + 
Sbjct: 194 ATFSNQIKQLANSLLHNPTILEVAPRNSASQQVKQLIHFVDKRRKAELLSYLIGSENWQQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T+ L +   + +A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 254 VLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGARTRALADFKSGAIRVLVATDIAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRA   G++V ++  + Q     + R    S
Sbjct: 314 GLDIEQLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLLTAIERLLKQS 373

Query: 367 VV------WEPAPSV 375
           +       +EP P++
Sbjct: 374 IPRMALAGYEPDPTI 388


>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Pongo
           abelii]
          Length = 765

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 253 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 430 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 490 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 549

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 550 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 605

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E         R + +
Sbjct: 606 LEKGKEAVVQEPERGWFQTKEERKKEK 632


>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
 gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
          Length = 477

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/484 (27%), Positives = 210/484 (43%), Gaps = 26/484 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +QE  + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  ITLLHRGRAR---ARMPRSLVLCPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  RV +A +      I    V+   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPERVEVARQASASETIAQHVVVFRPSRKDREGSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +        +N I+FC+ +  V    K + ++ +    + G+L Q  R   L  
Sbjct: 238 RAVLRAMIESEGENCRNGIIFCNRKVDVDVVAKSMKKNGYDAAPIHGDLDQSTRMRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGR+G ++ +  
Sbjct: 298 FRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGREGRAMMISV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
               +  E + R     +     P+                         E+        
Sbjct: 358 PRDDKNLEAIERLIQTEIPRMDNPAKVG------------AAPNAPEPAAEEAKPARTRT 405

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +   EK AA                   S    R R R   R                  
Sbjct: 406 RTRREKPAAAPAETVEQPQPQTPAAAEESRGKSRSRPRGGERRKGEREAEVVGMGDDMPS 465

Query: 470 SLSV 473
            +++
Sbjct: 466 FIAL 469


>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
 gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
          Length = 464

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 195/355 (54%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSDPILKAVTDKGYDTPSPIQAKAIPVVLEGRDVMAAAQTGTGKTAGFTLPLLEIL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+   AL + PTRELA QV   +E       +  AV  GGV ++ +   L+ G  
Sbjct: 66  GQPARANQVRALVLTPTRELAAQVAESVETYGKHLKLRSAVVFGGVKINPQMMKLRGGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D  +   ++ + L+ ++LDEAD MLD+GF +DI  IL + P+KR+ LMFS
Sbjct: 126 ILIATPGRLLDLHQQNAMSFNKLEILILDEADRMLDMGFINDIRKILKALPEKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      + +++  +N   + +      V    + + +V ++  H  + 
Sbjct: 186 ATFSDDIRDLAKTIVNKPIEISVTPKNSTATTVTQWIHPVDKKQKPSLLVELIYQHKWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +H  +  A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTRALADFKAGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++  +  ++ + + R
Sbjct: 306 GLDIEQLPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDIER 360


>gi|330812324|ref|YP_004356786.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380432|gb|AEA71782.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 190/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIA 373


>gi|47570033|ref|ZP_00240694.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47553285|gb|EAL11675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 451

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|108761880|ref|YP_632259.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
 gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
           1622]
          Length = 501

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 186/372 (50%), Gaps = 5/372 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  A+   GY   T +Q+  +   L  +DVL  AQTG+GKT AF L +  
Sbjct: 2   TFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+      A     L + PTRELA QVG           +  AV  GGV  + + + 
Sbjct: 62  RLSAKAP-AGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQT 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  ++V TPGRL D +    +++  L+  VLDEAD MLD+GF  D+  ++ + P KR
Sbjct: 121 LRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA++   D +RV +   +     +  +   V    +   + ++L+
Sbjct: 181 QTLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLK 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF  T+   +R  K L        A+ G  SQ  R  AL   R G  RV +A
Sbjct: 241 EGNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ +L + PE  +HR GRTGRAG  G +V       +     + 
Sbjct: 301 TDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDIE 360

Query: 361 R--EANVSVVWE 370
           R    NV VV +
Sbjct: 361 RTIRRNVPVVED 372


>gi|222151982|ref|YP_002561142.1| hypothetical protein MCCL_1739 [Macrococcus caseolyticus JCSC5402]
 gi|222121111|dbj|BAH18446.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 498

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/428 (30%), Positives = 221/428 (51%), Gaps = 14/428 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++   +    AL + G+   T +Q   +   +  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MQKFRDLGISEPTINALEKLGFTEPTPIQMDSIPHTMAGRDVLGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    +        +L +APTRELAVQV  +L+      G+ V    GG+ + R+ 
Sbjct: 61  IE-------KVKGREGIQSLILAPTRELAVQVAEQLKAFSRGQGIQVTTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L+    IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  PK
Sbjct: 114 RELKKKPQIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPK 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  M FSAT+  AI  L + + K+ V V   + N     I+    +V   ++ +   N
Sbjct: 174 ENRQTMLFSATMPKAIQELVQKFMKNPVIVKTMTNNDSDPSIEEFYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHRPELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG+ GM++  +         
Sbjct: 294 LVATDVAARGLDISGVTHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++ +  N  +     P+   +   RE+D +  ++  +  D+ +   + +   L+ ++   
Sbjct: 354 QIEKAKNRQMQALRPPTPGEVMKAREQDVKSKVKAWVEADT-EARIESIAKELIEEYGDV 412

Query: 415 KIAAGFLR 422
           K+ A  L+
Sbjct: 413 KLVASLLQ 420


>gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
          Length = 523

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 232/448 (51%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEKTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     ++I  + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADENIHSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E++A   L +      A  E+       
Sbjct: 415 EELAMYILSLTVQDPDALPEVEIAREKP 442


>gi|325183171|emb|CCA17628.1| putative RNA helicase [Albugo laibachii Nc14]
          Length = 1157

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 188/373 (50%), Gaps = 8/373 (2%)

Query: 3    IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
             FE  + P  + E +   G+   T +Q       L  +D++  + TGSGKT+AF L    
Sbjct: 754  TFEEASFPAYVLEEVMRLGFQKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIV 813

Query: 61   TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             + A+     P   P+ L IAPTRELAVQ+ +E     A + +      GGV  + +  +
Sbjct: 814  HINAQ-PHLEPGDGPIVLIIAPTRELAVQIQQEANKFGASSKIKNTCVYGGVPKYNQIME 872

Query: 121  LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            L+ G  I + TPGR+ D +     N+  +  +VLDEAD MLD+GF   +  I+      R
Sbjct: 873  LRQGVEICICTPGRMIDLLSQGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 932

Query: 181  RMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI- 238
            + LM+SAT    I +LA ++  D ++V + S     +  I+    ++    + NA+V   
Sbjct: 933  QTLMWSATWPKEIVSLAHDFLTDYIQVTVGSLELTANKKIEQIVEVMDDHQKYNALVAHL 992

Query: 239  LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               +     I+FC T+      ++ L    +   A+ G  SQ+ER   L+  + G+ ++ 
Sbjct: 993  RVIYDGGRIILFCETKRGADELSRNLRNSRYICKAIHGNKSQEERDYVLKDFKQGKTQIL 1052

Query: 299  IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
            +ATDVA+RG+D+ D+  VI+ ++  N E+ +HR GRT RAG KG ++     +  R A  
Sbjct: 1053 VATDVASRGLDIKDIRYVINFDMPKNVEDYIHRIGRTARAGSKGTAISFFTSDNGRLASP 1112

Query: 358  --RLFREANVSVV 368
              R+  EAN  V 
Sbjct: 1113 LIRVLEEANQQVP 1125


>gi|150007803|ref|YP_001302546.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256840069|ref|ZP_05545578.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298376828|ref|ZP_06986783.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
 gi|149936227|gb|ABR42924.1| ATP-dependent RNA helicase DeaD [Parabacteroides distasonis ATCC
           8503]
 gi|256738999|gb|EEU52324.1| ATP-dependent RNA helicase DeaD [Parabacteroides sp. D13]
 gi|298266706|gb|EFI08364.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_19]
          Length = 421

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 193/394 (48%), Gaps = 8/394 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   
Sbjct: 62  RLYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IA
Sbjct: 241 NPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++            + + 
Sbjct: 301 TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLKDIQ 360

Query: 361 REANVSVVWE-----PAPSVEAIRERDAQRILQD 389
           +     V            V+A      + I Q+
Sbjct: 361 KLIGKEVPIAGGHMYETKEVKAAVAEKKEAIKQE 394


>gi|271500987|ref|YP_003334012.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344542|gb|ACZ77307.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 452

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 188/377 (49%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LSADILRAVEEQGYREPTPVQSQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNESP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  VLAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILIATPGRLLDLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +   N     +      V    +   + +++  H  + 
Sbjct: 188 ATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIGKHNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAELLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP P+++A
Sbjct: 368 IPRIAIPGYEPDPTIKA 384


>gi|304395765|ref|ZP_07377648.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304357059|gb|EFM21423.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 457

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A  
Sbjct: 8   LSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQKLSATA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  TPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSMVVFGGVSINPQMVKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLAQQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    +   + +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQVAFVDKKRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLGKDGISAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G+++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRLAVEGYEPDPSIKA 384


>gi|187925284|ref|YP_001896926.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187716478|gb|ACD17702.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 515

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 214/463 (46%), Gaps = 7/463 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  + 
Sbjct: 8   LSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNTMP 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 68  AVTTGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 128 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I TLA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 188 FSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 248 FQVLVFTRTKHGANRLAEQLTKDSISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G ++ ++  +  +  + + +   
Sbjct: 308 ARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLKDIEKLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             V  E     E       +     P+      G           +  P++  AG  +  
Sbjct: 368 RPVPQEVIAGFEPDPTAKPE-----PILRRGQGGGGGGGRSPRQGQGAPKRDGAGSAKPA 422

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           +     P          G     +  +  + G    D  +  +
Sbjct: 423 QRSGQRPANGQQQPKPQGAKPAGNGGQPRRDGQRHDDRPRAVA 465


>gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 432

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 197/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + ++   +  S   AL +APTREL  QV   ++       + V    GGV +  +   +
Sbjct: 63  -MFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAKV 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ IL    + R+
Sbjct: 122 KKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         + +  +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         +  E +Q  R  AL+  ++G+ R  +AT
Sbjct: 242 KNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P+LE V++ +L    E+ +HR GRTGRAGR G+++ ++ +  +R    + +
Sbjct: 302 EVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGNKIRRITIPGYE-VGSRDL 382


>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 443

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 191/370 (51%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 8   LSEPLVRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQRLNSMP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 68  PAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 128 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +       + +A  N     +  +   V    +   + +++R H    
Sbjct: 188 ATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHNWFQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 248 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +     
Sbjct: 308 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRP 367

Query: 367 VVWEPAPSVE 376
           V  E     E
Sbjct: 368 VPQEVIAGFE 377


>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
 gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
          Length = 554

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 134/482 (27%), Positives = 219/482 (45%), Gaps = 18/482 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A++E GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 21  MTKFSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 81  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQD 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 138 KLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPF 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     R+ +A +     +I+   ++   S +D      
Sbjct: 198 TRQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEK 257

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+ 
Sbjct: 258 RKVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEG 317

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 318 FRNGDLRFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICV 377

Query: 350 QNMQRRAERLFREANVSVVWEPAP---SVEAIRERDAQRILQDP-LFLDSIQGDEKKMVD 405
              ++  E + R     +     P   S          +    P    D     EK    
Sbjct: 378 PRDEKNLEDVERLVQREIPRLDNPLGGSEAKAAPAAEAKTADAPAAKSDEAAKSEKPKRT 437

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              ++  P+   A   +   A   +P+   P +    +   +   +          +   
Sbjct: 438 RTRSRKKPDAAKADADQTETAQADSPKADKPDAKADAKSDAKPQDKKSDKPAKESADKAP 497

Query: 466 SS 467
           + 
Sbjct: 498 AQ 499


>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 435

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  E  P  E
Sbjct: 368 EISQEVIPGFE 378


>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKNCTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  E  P  E
Sbjct: 368 EISQEVIPGFE 378


>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
 gi|215919015|ref|NP_819700.2| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           493]
 gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
 gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
 gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
 gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
          Length = 420

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 187/378 (49%), Gaps = 4/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A+ E+GYV  T VQ   +   L+ +DV+V+AQTG+GKT  F L L  
Sbjct: 11  SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70

Query: 61  TLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L         ++ P+  AL + PTRELAVQV   +        +   V  GGVS+  + 
Sbjct: 71  RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D +    LN+S ++  VLDEAD MLD+GF  DI  IL   P+
Sbjct: 131 NHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT S  I  L          + +A  N   + I +    V    +   +  +
Sbjct: 191 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFM 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R ++ L        A+ G  SQ  R  AL   + G+ RV 
Sbjct: 251 IGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L  VI+ EL    ++ +HR GRTGRA   G+++ ++  +  R    
Sbjct: 311 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 370

Query: 359 LFREANVSVVWEPAPSVE 376
           + +     +  E  P  E
Sbjct: 371 IEKLLQSKMPQEVIPGYE 388


>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
 gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
           Goat Q177']
 gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           331]
 gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
           334]
          Length = 411

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 187/378 (49%), Gaps = 4/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A+ E+GYV  T VQ   +   L+ +DV+V+AQTG+GKT  F L L  
Sbjct: 2   SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L         ++ P+  AL + PTRELAVQV   +        +   V  GGVS+  + 
Sbjct: 62  RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D +    LN+S ++  VLDEAD MLD+GF  DI  IL   P+
Sbjct: 122 NHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT S  I  L          + +A  N   + I +    V    +   +  +
Sbjct: 182 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFM 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R ++ L        A+ G  SQ  R  AL   + G+ RV 
Sbjct: 242 IGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L  VI+ EL    ++ +HR GRTGRA   G+++ ++  +  R    
Sbjct: 302 VATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLLRD 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + +     +  E  P  E
Sbjct: 362 IEKLLQSKMPQEVIPGYE 379


>gi|304413058|ref|ZP_07394531.1| RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283901|gb|EFL92294.1| RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 446

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+ Y   T +QE  +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 43  LNADILRAITEQKYSAPTPIQEKAIPEVLAGRDLMASAQTGTGKTAGFTLPLLQLLSENQ 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  ++       +   V  GGVS++ +   L+ G  
Sbjct: 103 SLIKGRRPVRALILTPTRELAAQIGDNVKNYSEFLKLRSMVVFGGVSINPQMMKLRGGVD 162

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      ++++ ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 163 ILVATPGRLLDLEHQNAVDLAKIEILVLDEADRMLDMGFIHDIRRILAKLPAKRQNLLFS 222

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    +   + ++  N     I  R   V  S +   +  ++     + 
Sbjct: 223 ATFSNDIKLLAKKLLNNPAYIEVSPGNTTAKHITQRVHFVDKSRKRQLLSYMIGSQNWQQ 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 283 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 343 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAECSGEAISLVCVDEHKLLRDIERLLKNE 402

Query: 367 VV------WEPAPSVEA 377
           +       ++P P+++A
Sbjct: 403 IPRIAIDGYQPDPTIKA 419


>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 518

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 191/370 (51%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L +  
Sbjct: 8   LSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSMA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 68  PAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDALKRGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 128 IVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +       + +A  N     +  +   V    +   + +++R H    
Sbjct: 188 ATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIRQHSWFQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 248 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +     
Sbjct: 308 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIKRP 367

Query: 367 VVWEPAPSVE 376
           V  E     E
Sbjct: 368 VPQEVIAGFE 377


>gi|255013488|ref|ZP_05285614.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_7]
          Length = 421

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 193/394 (48%), Gaps = 8/394 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   
Sbjct: 62  RLYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IA
Sbjct: 241 NPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++            + + 
Sbjct: 301 TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLKDIQ 360

Query: 361 REANVSVVWE-----PAPSVEAIRERDAQRILQD 389
           +     V            V+A      + I Q+
Sbjct: 361 KLIGKEVPIAGGHMYETKEVKAAVAEKKEAIKQE 394


>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446036|gb|EDP23039.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
           M21/2]
          Length = 641

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 157/592 (26%), Positives = 240/592 (40%), Gaps = 50/592 (8%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   +  A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L A   R     A  AL + PTRELA+Q+G   E       +   V  GGV    +  
Sbjct: 61  DRLTANAPR--RKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++  PGRL D I    +++S L+  VLDEAD MLD+GF  D++ ++   P +
Sbjct: 119 ALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQ 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVN 237
           R+ LMFSAT+   I  LA     D   V +   +     I      V   ++      + 
Sbjct: 179 RQNLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLI 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                   NA+VF  T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V       Q    
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 358 RLFR--EANVSVV----WEPAPS----VEAIRERD----AQRILQDPLFLDSIQGDEKKM 403
            + +     + VV    W+  P+    V  +R +     A+ + + P         +   
Sbjct: 359 GIEKLNRRKIPVVSGHPWDGVPAPVRPVLPVRGKKPRPEAENLAEAPKKQAETAPAKAAK 418

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               + K +P+  AA     +       +E T +   + +   R+D RA   G  +    
Sbjct: 419 AAAPVPKQEPK--AAK----NAVPAKPKKEETLMQDSNAKRGVRNDRRANNRGANAPKEA 472

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                       ++ A          R S    +        P      VSA     LR 
Sbjct: 473 AAPRA------RRENAAP-------ARGSNAQPKF------DPHF----VSAPEATPLRP 509

Query: 524 TVKLDKGIQLKYLGGEKP--DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             K         +   +   + +    SG +  +  D   +R  R    S N
Sbjct: 510 ARKTPAAPAASAIRSAQELQNNQNANRSGSRRNDRSDRGEQRNARPAAQSNN 561


>gi|294789302|ref|ZP_06754540.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
 gi|294482727|gb|EFG30416.1| ATP-dependent RNA helicase RhlE [Simonsiella muelleri ATCC 29453]
          Length = 455

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 198/380 (52%), Gaps = 3/380 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  AL   GY + T +Q   +   L +KD++ SAQTGSGKT AF L     ++  
Sbjct: 9   NLDKNILSALQSAGYHSPTPIQMQAIPAALADKDIMASAQTGSGKTAAFLLPSLQKIIKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P  L + PTRELA QV +  +              +GG S  ++ + L   
Sbjct: 69  SEK--PGKGPRVLVLTPTRELAAQVEKNAQIYANNMKWVRTVTLVGGSSFGQQIKMLSRP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+R   ++   L+ ++LDEAD MLD+GF DDIE I+ ++P+ R+ L+
Sbjct: 127 IDVIVATPGRLMDHMRSGRIDFERLEVLILDEADRMLDMGFIDDIETIVAATPEDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   K+   + I  E++Q    +        + ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKNPEIIEIEREDKQGKIEEQLLYCDDKNHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVLADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRTGRAGR GM++     N      ++ R   
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRTGRAGRTGMAISFAEVNEYIAVHKIERYIE 366

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             +       +E  R+R+  
Sbjct: 367 RKLPEVVIEGLEPTRKRNKN 386


>gi|331009646|gb|EGH89702.1| ATP-dependent RNA helicase RhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 625

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 218/477 (45%), Gaps = 22/477 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F   +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFAPPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAMS 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT+LA     +  R+ +   N     I+ R   +A + + + + +++   
Sbjct: 188 LLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVVW-----EPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +           +VEA    +RER   R  +            ++       K  P
Sbjct: 368 TKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPAGDKNNGGRRDKGKDKGKEKP 427

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
              AA   R  R          P          R + RA +         +    F 
Sbjct: 428 ATAAATGERPARQ---------PREKKPREGTPRSEQRASQPSIPRPAADRAPDEFR 475


>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 418

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 198/380 (52%), Gaps = 5/380 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+    +I + I ++L E GY   T +Q   +   L+  D+L  AQTG+GKT AF + + 
Sbjct: 1   MQFHSLDIIEPILKSLQEEGYTTPTPIQAEAIPIVLQGNDLLGCAQTGTGKTAAFAIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+E+          +L + PTRELA+Q+G         TG+   V  GGV+ + +  
Sbjct: 61  Q-LLSESHSNEKKRKIRSLILTPTRELAIQIGESFRAYGRHTGLNNTVIFGGVNQNPQIS 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NG  IV+ TPGRL D +    LN+  ++  VLDEAD MLD+GF  DI+ +L   PKK
Sbjct: 120 ALRNGVDIVIATPGRLLDLMNQGFLNLRDVEIFVLDEADRMLDMGFIHDIKKVLAVLPKK 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+ P I  LA     +   V++   +     I      V   ++++ +V+IL
Sbjct: 180 KQSLFFSATLPPEIVRLAGTILHNPSEVSVTPISSTVDIIQQHIYFVDKGNKNSLLVDIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K A+VF  T+    +  K L+ H  +  A+ G  +Q  R  AL   ++   RV +
Sbjct: 240 KDQSIKTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALSNFKNQTTRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +LE VI+ E+S+  E  +HR GRTGRAG KG +        +     +
Sbjct: 300 ATDIAARGIDVDELEYVINFEISNIAETYVHRIGRTGRAGAKGTAYSFCDAEEKEYLRDI 359

Query: 360 FREANVSVV---WEPAPSVE 376
            +     +      P P ++
Sbjct: 360 EKLIGKKIPVIDNHPFPLID 379


>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
           'morsitans']
 gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
           'morsitans']
          Length = 453

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 195/383 (50%), Gaps = 1/383 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+E+GY+  T VQ+  +   L+ +D++ SAQTG+GKT AF L +   L    
Sbjct: 8   LSAEVLRALAEKGYLEPTPVQQQAIPYVLQGRDIMASAQTGTGKTAAFTLPILQLLDQRP 67

Query: 67  DRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P+ AL + PTRELA Q+G  +    A  G+   V  GGVS++ +   L+ G 
Sbjct: 68  APAGKQRRPIRALILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQMMKLRGGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  + + +++S ++ +VLDEAD MLD+GF  DI  ++   P KR+ LMF
Sbjct: 128 EVLVATPGRLLDLAQQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVMKLLPTKRQSLMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I TLA +   +   V +A  N     I     +V    +   + +++  +  +
Sbjct: 188 SATFSDEIKTLANSLLDNPASVEVARRNTASEQITQFVHMVDKKRKRELLSDMIGRNNWQ 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AA
Sbjct: 248 QVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKQGSIRVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  V++ EL    E+ +HR GRTGRA   G ++ ++  +       + R    
Sbjct: 308 RGLDIDLLPHVVNYELPQVAEDYVHRIGRTGRAAATGEALSLVCVDELGLLRDIERLLKK 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQ 388
            +     P  +      A+ I Q
Sbjct: 368 PIPRIVLPGYDPDSSIKAEPIQQ 390


>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 452

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 190/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILERL--AA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA Q+G  +E       +  AV  GGV ++ +   L+ G  
Sbjct: 66  GTRAPGKQVRALILTPTRELAAQIGANIEAYGKHLPLRSAVVFGGVKINPQIAKLRGGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    K +N   L  +VLDEAD MLD+GF  DI  IL + P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLHGQKAVNFDALDVLVLDEADRMLDMGFIHDIRRILKTLPSKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++   N     +      V  + +   + +++  H  + 
Sbjct: 186 ATFSQEIRQLAKGLVNDPVEISVTPRNTTAETVTQWIHPVDKARKPALLTHLIHEHQWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R ++ L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNARTKALDGFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G ++ ++     +    + R    +
Sbjct: 306 GLDINQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAGIERLIRQT 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 LERQTIAGFE 375


>gi|308186129|ref|YP_003930260.1| ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
 gi|308056639|gb|ADO08811.1| Putative ATP-dependent RNA helicase rhlE [Pantoea vagans C9-1]
          Length = 456

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A  
Sbjct: 8   LSADILRAVAEQGYSEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQKLSATA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  TPIRGRRPVRALILTPTRELAAQVGENVSDYSKYLSLRSLVVFGGVSINPQMVKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLAQQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    +   + +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKGLAEKLLTNPEMIEVARRNTASEQVAQQVHFVDKKRKRELLSQLIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLGKDGITAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G+++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGVALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRLAIEGYEPDPSIKA 384


>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 589

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 194/383 (50%), Gaps = 3/383 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +  AL+  GY   T +Q   +   ++ KD+L  AQTG+GKT AF L +  
Sbjct: 5   TFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFALPILH 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L AEN          AL ++PTRELA Q+G   +   A  G  VAV  GGV    + R 
Sbjct: 65  RL-AENRVAPRPRTTRALILSPTRELATQIGDSFKQYGAHLGFRVAVIFGGVKYGAQERA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  ++V  PGRL DHI+ K L++S  +  VLDEAD+MLDLGF   I  I+   P KR
Sbjct: 124 LQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQMLDLGFIKPIRQIVSRIPAKR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  LA    KD V+V +  +      I    + V    +   +  +  
Sbjct: 184 QNLFFSATMPSEIGKLAGELLKDPVKVQVTPQATTVERIKQSVIWVEQGKKRALLTELFS 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+    +    L     +  A+ G  SQ +R  AL+  ++G+ RV +A
Sbjct: 244 DPAYTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERALEAFKNGKLRVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ EL   PE  +HR GRT RAG+ G ++  +  +  +  + + 
Sbjct: 304 TDIAARGIDVDKVTHVVNFELPYVPEAYVHRIGRTARAGKDGTAISFVAGDEMKLLKDIE 363

Query: 361 REANVSVVWEPAPSVEAIRERDA 383
           +     +      + +A+ + DA
Sbjct: 364 KVTRQKIPAIDRRNDKALAQLDA 386


>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
 gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
           J2315]
          Length = 477

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPQEVIAGFE 378


>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 486

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPQEVIAGFE 378


>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
 gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 486

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 195/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + + +A++E GY + T +Q+  +   L   D+L  AQTG+GKT  F L +  
Sbjct: 2   SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L     +      A  AL + PTRELA QV   +        +   V  GGVS++ +  
Sbjct: 62  RLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P +
Sbjct: 122 ALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +       + +A  N     +  +   V    +   + +++
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   ++   +V +
Sbjct: 242 REHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    +
Sbjct: 302 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRDI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     +  E     E
Sbjct: 362 ERLIKREIPQEVIAGFE 378


>gi|301310161|ref|ZP_07216100.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
 gi|300831735|gb|EFK62366.1| putative ATP-dependent RNA helicase RhlE [Bacteroides sp. 20_3]
          Length = 421

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 193/394 (48%), Gaps = 8/394 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEDLDLIEPIRKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   
Sbjct: 62  RLYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IA
Sbjct: 241 NPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++            + + 
Sbjct: 301 TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLKDIQ 360

Query: 361 REANVSVV-----WEPAPSVEAIRERDAQRILQD 389
           +     V            V+A      + I Q+
Sbjct: 361 KLIGKEVPVAGGHMYETKEVKAAVAEKKEAIKQE 394


>gi|229196679|ref|ZP_04323422.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
 gi|228586754|gb|EEK44829.1| ATP-dependent RNA helicase [Bacillus cereus m1293]
          Length = 451

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 462

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 192/377 (50%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|319642286|ref|ZP_07996945.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
 gi|317386142|gb|EFV67062.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_40A]
          Length = 422

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/406 (29%), Positives = 193/406 (47%), Gaps = 8/406 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            +AL + GY   T +QE  +   L+ KD+L  AQTG+GKT AF + L   L   + +   
Sbjct: 1   MKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQRLYQSDHK--- 57

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                AL + PTRELA+Q+G   +     TGV  AV  GGV    +   L+ G  +++ T
Sbjct: 58  -KGIKALILTPTRELAIQIGENFDQYAGYTGVKHAVIFGGVPQKAQVDALKRGVQVLIAT 116

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D      +++  L+  VLDEAD MLD+GF  DI+ +L   P +R+ L FSAT+  
Sbjct: 117 PGRLLDLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLFFSATMPS 176

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA +   +  ++ +   +     I      V   ++ + ++++L+    ++ ++F 
Sbjct: 177 EIEKLADSMLTNPEKIEVTPVSSTVDTIRQSVYFVEKKEKKDLLLHLLKNPEIESVLIFT 236

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    +  ++L +      A+ G  SQ  R  AL   +D   RV IATD+AARGID+ 
Sbjct: 237 RTKHGADKLARILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIATDIAARGIDVN 296

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L  VI+ EL +  E  +HR GRTGRAG  G+++           + + +   + +    
Sbjct: 297 QLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQKLIGLQIPVVK 356

Query: 372 APSVEAIRERDAQ----RILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
                 +    AQ      L++    + +    K   D    K   
Sbjct: 357 DHPWVTVEGEKAQAGKTEELKEKAKANKVYRGSKSNGDYWRRKKQA 402


>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 417

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 199/388 (51%), Gaps = 12/388 (3%)

Query: 1   MK---IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           MK    F ++     I +A+ E+GY   T +Q+  +   L +KD+L  AQTG+GKT  F 
Sbjct: 1   MKKETTFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFT 60

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           L L   L  E           AL + PTRELA QVG  +            V  GGV ++
Sbjct: 61  LPLLELLSREKP-TKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKIN 119

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  +L+ G  IV+ TPGRL DHI  K +++  ++ ++LDEAD MLD+GF +DI+ IL+ 
Sbjct: 120 PQISNLRKGTDIVIATPGRLLDHISQKTIDLREVEYLILDEADRMLDMGFINDIKKILNI 179

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P +R+ L+FSAT S AI  L+  +      + +A  N     +      V  + +   +
Sbjct: 180 IPNQRQTLLFSATYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVYHVDKTRKRELL 239

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++     +  +VF  T+   +R +  L       VA+ G  SQ  R+ AL   + G  
Sbjct: 240 THLINEGKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDV 299

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV +ATD+AARGID+  L  VI+ EL +  E+ +HR GRTGRAG  G ++ ++  +    
Sbjct: 300 RVLVATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEF 359

Query: 356 AERLFREANVSVV------WEPAPSVEA 377
            + + +     +       ++P PS++A
Sbjct: 360 LQNIEKLIKKDIPKVWLKGFKPDPSIKA 387


>gi|306821248|ref|ZP_07454862.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550760|gb|EFM38737.1| ATP-dependent RNA helicase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 517

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 137/481 (28%), Positives = 231/481 (48%), Gaps = 18/481 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK  E  +I + I +A+   G+ ++T +QE I+   + + DV+  +QTG+GKTVAFG+ L
Sbjct: 1   MKFRELTDINENILKAIDAMGFEDMTQIQEKIVPVAVNKCDVIGQSQTGTGKTVAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  + ++        ++ + PTRELA+QV  E+  L            GG  + R+ 
Sbjct: 61  IQNLDFDEEKI------QSVIMTPTRELAIQVTAEINRLLRFLPTKAVALYGGEEITRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++   I+V TPGRL DHIR + +   ++  VVLDEADEML +GF +DIE IL+  P 
Sbjct: 115 KRLKDRPAIIVATPGRLMDHIRRRTVKTEYINTVVLDEADEMLSMGFVEDIEEILEQMPN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +   ++FSAT+   I  +++ + KD + V +  +      ID + + +  SD+ +A+  +
Sbjct: 175 RSITMLFSATMPDRIKKISEKFLKDPLFVKVERKTLTVDSIDQKYIQIQESDKFDALCRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +     I+F  T+  V      L    ++V  + G++ Q  R   L+  + G  R+ 
Sbjct: 235 LDIYQPPLCIIFGRTKRRVDELISGLQLRDYKVEGIHGDMKQDRREKVLERFKKGNIRIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L    E  +HR GRTGRAG+ G+S   +        + 
Sbjct: 295 VATDVAARGLDISGVTHVINFDLPQEIEGYVHRIGRTGRAGKSGVSFTFVHPKEMEFLQE 354

Query: 359 LFREANVSVVWEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +     P+V    EAI  R   +I+      +  +   +K+   LL ++D  
Sbjct: 355 IEHHTKSKMEKFKNPTVSQAKEAIYLRATDKIVDLMDLDNEKEEKLEKIAQSLLERYDAV 414

Query: 415 KIAAGFLRIH------RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            I +  LR+       +A +    E         R      +  +  G         +  
Sbjct: 415 DIISAALRVMTKNDKKQAYVKLTSERPLTLSKKYRKNVEKRNNPYGDGKRKFHKKGDNRT 474

Query: 469 F 469
           F
Sbjct: 475 F 475


>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 641

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 151/583 (25%), Positives = 231/583 (39%), Gaps = 46/583 (7%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   +  A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L A   R     A  AL + PTRELA+Q+G   E       +   V  GGV    +  
Sbjct: 61  DRLTANAPR--RKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++  PGRL D I    +++S L+  VLDEAD MLD+GF  D++ ++   P +
Sbjct: 119 ALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQ 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVN 237
           R+ LMFSAT+   I  LA     D   V +   +     I      V   ++      + 
Sbjct: 179 RQNLMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLI 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                   NA+VF  T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V       Q    
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 358 RLFR--EANVSVV----WEPAPS----VEAIRERD----AQRILQDPLFLDSIQGDEKKM 403
            + +     + VV    W+  P+    V  +R +     A+ + + P         +   
Sbjct: 359 GIEKLNRRKIPVVSGHPWDGVPAPVRPVLPVRGKKPRPEAENLAEAPKKQAETAPAKAAK 418

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                 K +P+  AA       A    P++   +   S   R   + R     G +    
Sbjct: 419 TAAPAPKQEPK--AA-----KNAVPAKPKKEETLMQDSNTKRGARNDRRANNRGANAPKE 471

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
             +         ++ A          R S    +            FV           R
Sbjct: 472 AAAPRA-----RRENAAP-------ARGSNAQPK-------FDPH-FVSAPEATPLRPAR 511

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                    +     E  + +    SG +  +  D   +R  R
Sbjct: 512 KTPAAPAAPVIRSAQEPQNNQNANRSGSRRNDRSDRGEQRNAR 554


>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 216/396 (54%), Gaps = 4/396 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   I  ALS++GYV+ T +Q   +   L+  DV+ +AQTG+GKT  F L +   
Sbjct: 38  FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L+   N   SPA  P+ AL + PTRELA QV   ++     T +   V  GGV +  +  
Sbjct: 98  LMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRSVVVFGGVDMAPQTA 157

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  IV+ TPGRL DHI+ K LN+S  + +V+DEAD MLD+GF  D++ I++  PK+
Sbjct: 158 ALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 217

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT SP I  LA  + KD V + +A  N    ++      V   D+ +A+  I+
Sbjct: 218 RQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYKVEEGDKGDAVSYII 277

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R  G K  IVF +T+   SR  + L     +  A+ G+ SQ ER  AL+  ++G   V +
Sbjct: 278 RERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAALEAFKNGTIEVLV 337

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +      R    +
Sbjct: 338 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDI 397

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +      V            R ++R  + P   DS
Sbjct: 398 EKMIKHKFVPAQLAGFVPAGNRASERKERSPRRDDS 433


>gi|253997010|ref|YP_003049074.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983689|gb|ACT48547.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 502

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 234/499 (46%), Gaps = 27/499 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++   + I  A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L + 
Sbjct: 9   TTFDSLGLSEPILRAINDAGYSAPTPIQANAIPLVLSGGDLLAGAQTGTGKTAGFTLPIL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +    + AS P  L ++PTRELA Q+   ++       +   V  GGV+ + +  
Sbjct: 69  HLLSKKPRAEAAASRPRCLMLSPTRELAAQIEESVKTYGKHLPLTSTVIFGGVNANPQIA 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ IL   PK+
Sbjct: 129 RLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAILPKQ 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA     +   V +A  N     ++    +V  + + + + +++
Sbjct: 189 RQNLLFSATFSEEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVPQAHKRDLVTHLI 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           ++H  K  +VF  T+   +R  + L +   Q  A+ G  SQ  R+ AL   +DG  RV +
Sbjct: 249 KHHDWKQVLVFTRTKHGANRLAEKLIKDDIQAAAIHGNKSQGARTKALAQFKDGSMRVLV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++ +   +  + +
Sbjct: 309 ATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREEIKLLKDI 368

Query: 360 FREANVSVVWEPA--------PSVEAIRERDAQ----RILQDPLFLDSIQGDE------- 400
            +     +             P  EA R    Q    R  Q+     +   +        
Sbjct: 369 EKLIKREIPRVSVEGFTPAANPEPEAPRAPRPQQGQRRKPQENSKQATPAKNNAAAPSQQ 428

Query: 401 -KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
            K+          P   AA    + ++ L +P+   P +     +R   +      G  +
Sbjct: 429 AKRSQPAQPRSQKPMSEAARHQAMPQSALFSPQ---PTNSNQRGNRGNSNRGQVARGQQN 485

Query: 460 RDNFKGSSWFSLSVGSKQK 478
           R N    S +    G + +
Sbjct: 486 RGNANPGSQYRT--GGRDR 502


>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 496

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 198/372 (53%), Gaps = 7/372 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   Q +  A+   GY   T +Q   + P L+ +D+L  AQTG+GKT AF L + S
Sbjct: 2   TFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV        A   + VA+ IGGVS   +   
Sbjct: 62  RLEQGRAR---ARVPRTLILEPTRELAAQVEESFAKYGANHKLNVALLIGGVSFGDQEAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA +++ TPGRL D      L ++ ++ +V+DEAD MLD+GF  DIE +    P  R
Sbjct: 119 IMRGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRMLDMGFIPDIERVCKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNI 238
           + L FSAT+ P IT L + +  + +R+ +A  +   S I     A       R+     I
Sbjct: 179 QTLFFSATMPPEITRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHADKRETLRNLI 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 KNAIVFC+ +  V+   + L +H F   AL G++ Q  R  +L   ++G   + 
Sbjct: 239 RGAENLKNAIVFCNRKRDVAILHRSLVKHGFPAGALHGDMDQLARMASLDAFKNGDVAIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G+++ ++ ++  +  ++
Sbjct: 299 VCSDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGVAMTIVTEDDTKYIDQ 358

Query: 359 LFREANVSVVWE 370
           +      ++ WE
Sbjct: 359 IQSLIGKAIEWE 370


>gi|228915063|ref|ZP_04078662.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844597|gb|EEM89649.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 447

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 201/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E           AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPECGDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|24372961|ref|NP_717003.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347107|gb|AAN54448.1|AE015582_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 433

 Score =  209 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/411 (31%), Positives = 202/411 (49%), Gaps = 3/411 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L
Sbjct: 63  -MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         ++   +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                +     P  E        + LQ        Q  +  + + ++A+  
Sbjct: 362 LIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRQDNVSEQMIAEKS 412


>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 545

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 158/571 (27%), Positives = 250/571 (43%), Gaps = 60/571 (10%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + +A+  +GY   T++Q   +   L  +D+L  AQTG+GKT AFGL +   L       
Sbjct: 11  ELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQIL---GLTR 67

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA+QVG  ++    K  +   V  GGV +  +   L+ G  I+V
Sbjct: 68  GNGHHPRALILTPTRELALQVGESIKAYARKVSLRCTVAFGGVRIEPQIARLERGIDILV 127

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D    + L+++ ++ +V DEAD MLDLGF  +I  ILD  P  RR ++FSAT 
Sbjct: 128 ATPGRLLDLASQEHLSLASIEFLVFDEADRMLDLGFSGEINAILDLLPTVRRTMLFSATY 187

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +P I  LA         + I  +      +  +   V   ++   +++++        +V
Sbjct: 188 TPQIKALAAKMLDKPEYIEITPDTAAAEAVQQKVHHVNKDNKLPLLLHLIEKQKQDRILV 247

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR   +R T  LA H   V AL G  SQ  R   L+  +DG+  + +ATDVAARG+D
Sbjct: 248 FARTRTWANRLTDKLAAHGISVAALHGSKSQSLRKRTLEEFKDGKIHILVATDVAARGLD 307

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFREANVS 366
           + +L LV++ ++ ++PE+ +HR GRTGRAG  G++V ++    +      E L R     
Sbjct: 308 ISNLPLVVNYDIPNSPEDYVHRIGRTGRAGVSGIAVSLVSPEERNLLLAIEDLLRH---- 363

Query: 367 VVWEPAPSVEAIRE-RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
               P  +V+   E  D    +         + +  + +  L+AK  P K+        +
Sbjct: 364 --QIPVEAVKGFTEDSDVPDFVLYRPGNPKSERNAPRAIKELVAKKSPAKLTV------Q 415

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                P++  P S   G    + D+R  +      D+         S G           
Sbjct: 416 GRGKKPKDAGPESTTRGNKNEKSDARKAEDKDTRPDSKPRGR----STGKPD-------- 463

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK---PD 542
               RS                         G D   R  + ++       G EK   P+
Sbjct: 464 ---ARSGK---------------------DSGPDAKGRGRRNER--TDTRTGSEKNSGPE 497

Query: 543 FRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +G      +S++S+ GA KR    +G +  
Sbjct: 498 SKGRGRRNERSEDSRAGADKRGGNTRGKAAR 528


>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 460

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 192/377 (50%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|172058935|ref|YP_001815395.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171991456|gb|ACB62378.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 410

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/388 (32%), Positives = 198/388 (51%), Gaps = 10/388 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +   +   + L ++G    T +QE  +   L  +D++  AQTG+GKT+AF L +
Sbjct: 1   MSTFEALHIQEQWVKKLQKQGIKQPTPIQEQAIPHLLAGRDLIGKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E      +    AL +APTRELA Q+  E   L      + A+   GG  V ++
Sbjct: 61  LEQIDLE------SKTVQALIVAPTRELARQIADETHKLIRNMEDIRALAVYGGQDVFKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L     I++GTPGR+ DH+    L++S LK +VLDEAD+ML +GF  +IE I+ ++P
Sbjct: 115 IQRLGRMPQIIIGTPGRILDHVGRGTLDLSELKTLVLDEADQMLQIGFLPEIEDIIAAAP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ +M SAT+   +  LAK Y +D + V + +E      I+   V      +   +  
Sbjct: 175 VDRQFVMLSATMPEKVEQLAKTYLRDPIEVQVEAEKVTVDAIEQFVVETTDRRKQATLRT 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AI+FC T+  VS+  + L    +    L G L+Q +R  A+     G+   
Sbjct: 235 MLDEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGLTQGKREKAMAKFYQGKTPF 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+  +  V + +L  + E+ +HR GRTGRAG  G+++ ++     R   
Sbjct: 295 LIATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGVAISIVTPRDGRSFR 354

Query: 358 RLFREANVSVVWEPAP-SVEAIRERDAQ 384
            + RE  V V       S E IR +  Q
Sbjct: 355 DMERELGVEVTPIVVELSDEMIRAQHDQ 382


>gi|258577027|ref|XP_002542695.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
 gi|237902961|gb|EEP77362.1| ATP-dependent RNA helicase p62 [Uncinocarpus reesii 1704]
          Length = 1336

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 106/376 (28%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 918  VESFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 977

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 978  IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPRGPQI 1036

Query: 119  RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 1037 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 1096

Query: 179  KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
             R+  M+SAT    +  LA ++  D ++V I S++   +  I     +V+  ++ + ++ 
Sbjct: 1097 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIQ 1156

Query: 238  ILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             +           ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 1157 HMERIMDDKKSKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 1216

Query: 295  ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +   +  +
Sbjct: 1217 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNAK 1276

Query: 355  RAER---LFREANVSV 367
            +A     +  E+   +
Sbjct: 1277 QARDLVNILTESKQQI 1292


>gi|168019686|ref|XP_001762375.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686453|gb|EDQ72842.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 689

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 160/562 (28%), Positives = 265/562 (47%), Gaps = 42/562 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64
           IPQ + +AL++RG   L  +Q A+L+P ++ +D++  A+TG+GKT+AFG+ +   +L   
Sbjct: 54  IPQAVVDALAKRGIEKLFPIQRAVLDPAMQGRDLIGRAKTGTGKTLAFGIPIIHNILKAH 113

Query: 65  ENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           E DR S  S   P AL +APTRELA QV RE          V     GGVS+  ++R LQ
Sbjct: 114 EADRTSRRSGRAPRALVLAPTRELAKQVEREFMESAPMLSTVC--VYGGVSITTQQRQLQ 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  + VGTPGR+ D I  + L++  +  +VLDEAD+ML +GF +D+E IL+  P++R+ 
Sbjct: 172 RGVDVAVGTPGRIIDLIERRSLSLRDVSYLVLDEADQMLAVGFEEDVERILEQMPEERQS 231

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  L+K Y K  + +++  ++ +            +   + R      I 
Sbjct: 232 MLFSATMPNWVKKLSKKYLKSPLTIDLVGDSNEKLAEGIKMLAVCIPPAAKRTVLNDLIS 291

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      IVF  T+        VL   L    AL G+++Q +R   L   R+GR  V +
Sbjct: 292 VHGSVGKTIVFTQTKRDADDVASVLGRTLGC-EALHGDITQSQRERTLASFREGRFSVLV 350

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LV+H E+ ++PE  +HRSGRTGRAG+ G ++ +  +N +R    +
Sbjct: 351 ATDVAARGLDIPNVDLVVHYEIPNDPETFVHRSGRTGRAGKDGTAILMFSENQKRTMRNI 410

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAA 418
             +          P +E + +  ++        ++  +        + LL K  P   AA
Sbjct: 411 EMDVGCKFTLMSPPQMEEVLQASSKAAKAVIQRVNPDVANVFLSTAEKLLEKEGPGAFAA 470

Query: 419 GFLRIH-RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
               +   + L AP  +          R        +                       
Sbjct: 471 ALAHLSGFSQLPAPRSLITHEEGLITLRMVRTEELPRA---------------------- 508

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF----VEVSADGV-DLLRRTVKLDKGIQ 532
              AR +M +L         ++G IR+  D        ++  +   +LL +  + +  I+
Sbjct: 509 -MSARMVMGVLADIWDAAADNVGKIRIIDDPKIQGAVFDLPQEIAKELLTKPRREEDVIE 567

Query: 533 -LKYLGGEKPDFRGYKSSGFKS 553
            +K L     D  G +  G   
Sbjct: 568 SIKKLPKLV-DLDGDRGRGSDR 588


>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 212/387 (54%), Gaps = 4/387 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I +A+ E GY   T +QE  +   L  +D++ +AQTG+GKT +F L +  
Sbjct: 12  TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   ++     T +  AV  GGV ++ + 
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQS 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH++ K  N+  ++ +VLDEAD MLD+GF  D++ IL+  PK
Sbjct: 132 EQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPK 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA  Y ++   + +A  N   +++      VA  D+  A+V +
Sbjct: 192 ERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQL 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R  G K  IVFC+++   SR  + L        A+ G+ +Q ER  AL   + G     
Sbjct: 252 IRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEAL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +L  N E+ +HR GRTGRAG  G ++ +   N +++   
Sbjct: 312 VATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLAD 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + +     +  +       +R    +R
Sbjct: 372 IEKLIKRPLDVQRLTVEAPVRHHHEER 398


>gi|262381688|ref|ZP_06074826.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
 gi|262296865|gb|EEY84795.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_33B]
          Length = 421

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/394 (32%), Positives = 193/394 (48%), Gaps = 8/394 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + I +AL + GY   T +Q   +    +  D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEDLDLIEPICKALVQEGYTTPTPIQSEAIPIVSQGYDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  +        AL + PTRELA+Q+G          G+   V  GGV    +   
Sbjct: 62  RLYLQKKK-GYKRGIKALILTPTRELAIQIGESFAAYGRFAGLRHTVIFGGVGQKPQTEA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    +++  L+  VLDEAD MLD+GF  DI+ IL   PKKR
Sbjct: 121 LERGIDILIATPGRLLDLIGQGFIHLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V  +++ N + ++L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILSEPQKVEVTPASSTVDAIDQSVYFVEKAEKINLLKSLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ ++F  T+    +  +VL++      A+ G  SQ  R  AL   +D   RV IA
Sbjct: 241 NPELESVLIFTRTKHGADKVARVLSKAEIGAEAIHGNKSQTARQRALTNFKDHTTRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ EL + PE  +HR GRTGRAGR+G++            + + 
Sbjct: 301 TDIAARGIDVDHLTHVINYELPNVPETYVHRIGRTGRAGREGVAFSFCDAEEVPLLKDIQ 360

Query: 361 REANVSVV-----WEPAPSVEAIRERDAQRILQD 389
           +     V            V+A      + I Q+
Sbjct: 361 KLIGKEVPVAGGHMYETKEVKAAVAEKKEAIKQE 394


>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 419

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 1/379 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL    +   T +Q   +   L   D+L  AQTG+GKT+AFGL L   LLA+ 
Sbjct: 9   LAPALNDALKRANFTQPTPIQNQAIPLALNGHDILGLAQTGTGKTLAFGLPLIDHLLAQP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +A  AL +APTREL  Q+   L  L  KT + VA  +GG S++++   L  G  
Sbjct: 69  GKPAPKTA-KALILAPTRELVNQIADSLRGLTKKTKLRVATVVGGQSINKQIMFLSRGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++S ++ +VLDEAD+MLD+GF   +  I       R+ ++FS
Sbjct: 128 ILVATPGRLIDLMERGAVDLSSVRHLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y  +  RV ++   +    I      V    +   +  IL       
Sbjct: 188 ATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSIHFVEKPAKPAKLREILSADMDAL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  K L    +   ++ G  SQ +R  A++  R G   + +ATDVAAR
Sbjct: 248 TLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  VI+ +L   P+N +HR GRT RAGR+G ++            ++ +   + 
Sbjct: 308 GIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLRQIQKLMKIE 367

Query: 367 VVWEPAPSVEAIRERDAQR 385
           +        EA+  +   R
Sbjct: 368 IPVASGEMPEAVAPKKPAR 386


>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 434

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +   L    
Sbjct: 14  LSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQRLNDSP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 74  IQMKGRRPVRALILTPTRELAAQVGENVRDYSKYLRLRSLVVFGGVSINPQMMKLRGGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L+  P KR+ L+FS
Sbjct: 134 ILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKRQNLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA    +D V V +A  N     I+     V    +   +  ++     + 
Sbjct: 194 ATFSDDIKSLASKLLRDPVSVEVARRNSASEQIEQLVHFVDKKRKGELLSFLIGSRNWQQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +DGR RV +ATD+AAR
Sbjct: 254 VLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKDGRIRVLVATDIAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +  + + R     
Sbjct: 314 GLDIDQLPYVVNFELPNVAEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIERLLKRE 373

Query: 367 VV------WEPAPSVEA 377
           +       +EP P+++A
Sbjct: 374 IPRMAIPGYEPDPTIKA 390


>gi|223634733|sp|A5DQF1|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 210/409 (51%), Gaps = 14/409 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + EA+ +  Y   T +Q   +   L  KD++  AQTGSGKT AF + +  +L   
Sbjct: 70  NLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEA 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       AL +APTRELA Q+    + L +  GV     +GG+ +  + RDL    
Sbjct: 130 QRPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKP 183

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI+V TPGR+ DH+      ++  L+ +V+DEAD +LD+ F   ++ IL   P KR   +
Sbjct: 184 HILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYL 243

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+V ++++ +   ++    +LV+   ++  ++++L     
Sbjct: 244 FSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMG 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ IVF  T A   R T +     F  V L G+L+Q +R  +L   + G+A + IATDVA
Sbjct: 304 KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ ++ Q       R+     
Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLG 423

Query: 365 VSVVWEPAPSVEAIRERD-------AQRILQDPLFLDSIQGDEKKMVDV 406
             +  +P+P  + +           A+ I Q   F +     ++   D 
Sbjct: 424 FKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDDRDR 472


>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 475

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 210/409 (51%), Gaps = 14/409 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + EA+ +  Y   T +Q   +   L  KD++  AQTGSGKT AF + +  +L   
Sbjct: 70  NLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEA 129

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       AL +APTRELA Q+    + L +  GV     +GG+ +  + RDL    
Sbjct: 130 QRPY------YALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKP 183

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI+V TPGR+ DH+      ++  L+ +V+DEAD +LD+ F   ++ IL   P KR   +
Sbjct: 184 HILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYL 243

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  I  L +    + V+V ++++ +   ++    +LV+   ++  ++++L     
Sbjct: 244 FSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMG 303

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ IVF  T A   R T +     F  V L G+L+Q +R  +L   + G+A + IATDVA
Sbjct: 304 KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATDVA 363

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ ++ Q       R+     
Sbjct: 364 ARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESVLG 423

Query: 365 VSVVWEPAPSVEAIRERD-------AQRILQDPLFLDSIQGDEKKMVDV 406
             +  +P+P  + +           A+ I Q   F +     ++   D 
Sbjct: 424 FKLPKDPSPPRDVLNALHVHVDRASAEAIKQTKDFHEKRTKKKRDDRDR 472


>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 441

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 184/392 (46%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+  
Sbjct: 10  DLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +     A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DVVVATTGRLMQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      +  +R+      +    A   +    +   +     
Sbjct: 188 SATLEGNAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTTLLCHQLKQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATD+
Sbjct: 248 VTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  V + +L    +  LHR GRTGRAGRKG ++  +  +      ++ R  
Sbjct: 308 AARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKISRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPL 391
           N      V+ E  P  +A   +   +  +  L
Sbjct: 368 NEPLKPRVIEELRPETKAPSAKTTGKPSKKVL 399


>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 540

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 140/499 (28%), Positives = 225/499 (45%), Gaps = 24/499 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I  AL+E  +V  T +Q   +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTSFSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R  P  +   L ++PTREL+ Q+   L+       +   + IGGV + R+ 
Sbjct: 61  LDHLSRNPRRIEP-RSCRVLILSPTRELSGQILDNLDKFGRHIRLSTTLAIGGVPMGRQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G  ++V TPGRL D +    L +  ++  VLDEAD+MLD+GF   I+ I+   P 
Sbjct: 120 RALQRGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQMLDMGFVHAIKAIVRRLPH 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR  L FSAT+  AI  LA +  ++ V V +    +    +D R + V    +   +  +
Sbjct: 180 KRHSLFFSATMPSAIADLAASMLRNPVTVAVTPVAKTADRVDQRVIFVEKPAKAKMLAEV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       A+VF  T+    +  +VLA    +  A+ G  SQ +R   L   R+G  R  
Sbjct: 240 LSTEEVDRALVFTRTKHGADKVVQVLARAGHKAEAIHGNKSQNQRDRVLAAFREGSLRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ +L + PE+ +HR GRT RAGR+G+++       +     
Sbjct: 300 VATDIAARGIDVTGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERAYLRS 359

Query: 359 LFREANVSV-------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + +   +++          PA + +A+ E D  R    P      +G+ ++  +    + 
Sbjct: 360 IEKLIRMTLPTTDRRGEARPAEAADAVGE-DRPRANAQP------RGERQERREPRGERK 412

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS--RDNFKGSSWF 469
           +     A   +  R     P    P    +G +R   +    +  G           +  
Sbjct: 413 EARPPRAERPQGERVQGDRPRGERPRGERTGAERNGAERNGAERHGAERVHSERPAGARQ 472

Query: 470 SLSV-----GSKQKAEARW 483
             +      G K  A    
Sbjct: 473 RSAAGPHGEGRKADARPAH 491


>gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
          Length = 523

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 139/448 (31%), Positives = 233/448 (52%), Gaps = 13/448 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +   + + G+V  + +QE  +   +  KDV+  AQTG+GKT AFG    
Sbjct: 1   MKFNELHLSTELLAEIEKAGFVEASPIQEQTIPLAMAGKDVIGQAQTGTGKTAAFGFPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +N       A  AL IAPTRELAVQ   EL       GV V    GG S+ ++ +
Sbjct: 61  EKIDTDNP------AVQALIIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L ++ ++ ++LDEADEML++GF +DIE I+   P++
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEMLNMGFLEDIESIISRVPEE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  AI  +   + K+   V IA++      +D   + V  +++ + +  ++
Sbjct: 175 RQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKELTTELVDQYYIRVKENEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + +IVF  T+  V   T+ L    F+   + G+L Q +R   L+  ++G   V +
Sbjct: 235 DVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQGKRLRVLRDFKNGNLDVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG+ G S+  +  N     + +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQII 354

Query: 360 FREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKM---VDVLLAKHDP 413
                  +      + E     +++ A + ++     +SI+ + +K       L A+  P
Sbjct: 355 ENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDFADESIRSNFEKFGKDARKLAAEFSP 414

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           E+++   L +      A  E+       
Sbjct: 415 EELSMYILSLTVQDPDALPEVEIAREKP 442


>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 406

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/392 (31%), Positives = 211/392 (53%), Gaps = 10/392 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     I  A+ E GY   T +Q   +   +  +DV+ SAQTG+GKT AF L  
Sbjct: 1   MTTFKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +    +AP  L + PTRELA QV  + E       +  A+  GGV   R+R
Sbjct: 61  LHRL----GKHQKGAAPRCLVLGPTRELAAQVKEQFEKYGKDAQLKCALIHGGVGYGRQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ GA +V+ TPGRL DH++ +  ++ ++  ++LDE D MLD+GF DD++ I+    K
Sbjct: 117 QELEAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDRMLDMGFIDDVKKIIKFCSK 176

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  + FSAT+S  I  L     KD V V IA +      + +    V    + + +V 
Sbjct: 177 QGRQTLLFSATVSEEIKRLIARSLKDPVEVAIAVKITPAETVKHEVYPVGAMQKFDLLVA 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++      + I+FC  +    R T+ L +H ++V A+  +L+Q+ R+ ALQ  +DG  ++
Sbjct: 237 LIESMEVDSMIIFCRMKIGADRITRWLQQHKYKVAAMHADLNQKARNRALQDFKDGNIKI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+A+RG+D+ ++  VI+ ++  +PE+ +HR GRTGRA R+G +  ++  + + + +
Sbjct: 297 LVATDIASRGLDIANVTHVINYDVPEHPEDYVHRIGRTGRAQREGDAATILAPDEESKLD 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
            + +  +  +      S   I      RI +D
Sbjct: 357 AIEKFIDQLIPQRKLESFSYI---HQPRIRED 385


>gi|254229364|ref|ZP_04922780.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151938055|gb|EDN56897.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 577

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 236/486 (48%), Gaps = 12/486 (2%)

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGT 131
             P A+ +APTRELA+QV  E++ L      +  +   GG S+  + R L++GA ++VGT
Sbjct: 6   RKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMRALKSGAQVIVGT 65

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ D I  + L++  +   VLDEADEML++GF DD+  I++ +P+  + ++FSAT+ P
Sbjct: 66  PGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPP 125

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +  + + + ++ V V++A +N     +  +  +V   ++D A+  +L       +IVF 
Sbjct: 126 MLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIVFV 185

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV ARG+D+P
Sbjct: 186 RTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVP 245

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R    S+    
Sbjct: 246 RITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTKSSMEEIQ 305

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAGFLRIHRA 426
            P  + + E    ++  + L  +       K  +++         DP  +AA  L+  + 
Sbjct: 306 LPLRDQVAEARLAKLGAE-LEAEKEHKALDKFAELVEKLQTSLDIDPATLAAMLLKRQQG 364

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARWL 484
                       + +     +      + G     NF    W  + L VG +Q  + + +
Sbjct: 365 KRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQVGREQGVQVKDI 424

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLKYLGGEKPDF 543
           +  L    G+ + SIGAI++    TFV++            KL K  I+ + +G    DF
Sbjct: 425 VGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTS--EAAGKLSKLRIRQQDVGAVVCDF 482

Query: 544 RGYKSS 549
             ++ S
Sbjct: 483 DDFRES 488


>gi|73992237|ref|XP_534451.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 1 [Canis familiaris]
          Length = 765

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 217/454 (47%), Gaps = 14/454 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 250

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R SP +    L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 251 -PRQSPVT--RVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAP 307

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 308 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 367

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    V +  +    R+  +  +L  
Sbjct: 368 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTR 427

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 428 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 487

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 488 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 547

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK++      +    +I    
Sbjct: 548 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL------QQSEAQINTAK 601

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             + R          P          R   +  K
Sbjct: 602 RLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 635


>gi|304411082|ref|ZP_07392698.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301795|ref|ZP_07581553.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350617|gb|EFM15019.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913833|gb|EFN44254.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 515

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 68  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 126 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 365

Query: 367 VVWE 370
           +  E
Sbjct: 366 LDRE 369


>gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 514

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 68  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 126 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 365

Query: 367 VVWE 370
           +  E
Sbjct: 366 LDRE 369


>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 515

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 68  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 126 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 365

Query: 367 VVWE 370
           +  E
Sbjct: 366 LDRE 369


>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 525

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 19  LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 79  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 137 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 376

Query: 367 VVWE 370
           +  E
Sbjct: 377 LDRE 380


>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 525

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 19  LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 79  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 137 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 376

Query: 367 VVWE 370
           +  E
Sbjct: 377 LDRE 380


>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 526

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 197/364 (54%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 19  LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPMLELLSKGN 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 79  R--AQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKLRHGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  S L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 137 VLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   ++ +++ +  + 
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQNDWQQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +   +  A+ G  SQ  R+ AL   ++G+ARV +ATD+AAR
Sbjct: 257 VLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADFKNGQARVLVATDIAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLINRV 376

Query: 367 VVWE 370
           +  E
Sbjct: 377 LDRE 380


>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
 gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
          Length = 457

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 203/375 (54%), Gaps = 5/375 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P  +  A+ E GY   T +Q   +   L  +DVL +AQTG+GKT AF L +
Sbjct: 1   MMTFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPI 60

Query: 59  ASTL-LAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + L        SPA  P+  L + PTRELA Q+   ++       +      GGV++  
Sbjct: 61  IARLRHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTKYLPLRHTCVFGGVNMDP 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++ DL  G  IVV TPGRL DH+  K + ++ ++ +VLDEAD MLD+GF  DI  IL   
Sbjct: 121 QKADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRMLDMGFILDIRRILAQL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT SP I  LA  +Q+D V + +A +N   + ++     V    +   + 
Sbjct: 181 PKTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQKRRLLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ++        IVFC T+    R  + L         A+ G+ +QQ R + L   +DG+ 
Sbjct: 241 RLINERAMSQVIVFCRTKQGADRLARELRNFDRLDAEAIHGDKAQQARLDTLAAFKDGKL 300

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDVAARG+D+ DL  V++ +L ++PE+ +HR GRTGRAG+ G+++ ++    Q+ 
Sbjct: 301 RILVATDVAARGLDVSDLPFVVNFDLPNSPEDYVHRIGRTGRAGQSGVAISLMDAEEQKL 360

Query: 356 AERLFREANVSVVWE 370
            E + +    ++  +
Sbjct: 361 LEAIEKLTRQTLTPQ 375


>gi|62088770|dbj|BAD92832.1| DEAD box polypeptide 17 isoform p82 variant [Homo sapiens]
          Length = 737

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 179 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 238

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 239 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 297

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 298 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 357

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 358 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 417

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 418 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 477

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 478 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 537

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 538 VLEEANQAINPK 549


>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 418

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 133/373 (35%), Positives = 207/373 (55%), Gaps = 3/373 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + I  A +ERGY + T +QE  +   +   D+L  AQTG+GKT AF + +
Sbjct: 1   MSSFESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPI 60

Query: 59  ASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L       S A S+  AL + PTRELA QV   ++       +   V IGGV ++ +
Sbjct: 61  LHKLAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+    I+V TPGRL DHI+ + +++SH++ +VLDEAD MLD+GF  DI  IL   P
Sbjct: 121 MQKLRRSVDILVATPGRLLDHIQQRSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ L+FSAT SP I  LA     +   V +A+ N    ++  R   V    +   + +
Sbjct: 181 KKRQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  H     +VF  T+    R  + L++   Q +A+ G+ SQ  R+ AL   ++G+ +V
Sbjct: 241 LIEEHQWGQVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V++ EL   PE+ +HR GRTGRAG  G +V ++    +++ +
Sbjct: 301 LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ 360

Query: 358 RLFREANVSVVWE 370
            + +    S   E
Sbjct: 361 DVEKLLRRSFDRE 373


>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
 gi|91207781|sp|Q6BQ61|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii]
          Length = 477

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 125/421 (29%), Positives = 215/421 (51%), Gaps = 14/421 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F  +     + EA+ +  +   T +Q   +   L  KD++  AQTGSGKT AF + +
Sbjct: 64  FKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPI 123

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L      +   +A   L +APTRELA Q+    + L +  G+     +GG+ +  + 
Sbjct: 124 LQAL------WEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQA 177

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    HI+V TPGR+ DH    KG ++ +LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 178 RDLMRKPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKIIP 237

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R   +FSAT++  I  L +    + VRV ++++ +   ++    +LV+   ++  +++
Sbjct: 238 TQRTTYLFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQSMMLVSDGYKNTYLIH 297

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K+ I+F  T A   R   +     F  V L G+L+Q +R  +L   + G+A +
Sbjct: 298 LLNEFLGKSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLTQAQRLGSLNKFKAGKANI 357

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAG+ G S+ +I Q       
Sbjct: 358 LIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYL 417

Query: 358 RLFREANVSVVWEPAPSVEAIRER---DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           R+       +  +P+PS +A+ +       R   +     +    EK+         D E
Sbjct: 418 RIESVLGKKLPKDPSPS-KAVLDTLHVHVDRASAE-AIRQTKDFHEKRNPKKNRDDRDRE 475

Query: 415 K 415
           +
Sbjct: 476 E 476


>gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
          Length = 442

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 10/418 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+             +      A   R+      +    A   +    + +
Sbjct: 181 RKQTLLFSATLEGEAIQDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL 240

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 +   A+VF   R  V      L E       L GEL Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL 360

Query: 357 ERLFREANVSV----VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            ++ R     +    + E  P+  A  E+   +  +  L   + Q +++K  +    K
Sbjct: 361 GKIIRYVKEPIKARVIDELRPTTRAPSEKLKGKPSKKVLAKRTEQKNKQKAEEKPRVK 418


>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 423

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 3/380 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   I  AL+ +GY   T +Q   +   +   DV+ +AQTG+GKT  F L + 
Sbjct: 1   MTFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + +  + A+    L + PTRELA QVG  +        +  AV  GGV ++ +  
Sbjct: 61  EML--KGNERAKANTARVLILTPTRELAAQVGESVANYGKDLPLSYAVVFGGVKINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P K
Sbjct: 119 KLRKGVDILVATPGRLLDLYQQNAIRFPQLETLVLDEADRMLDMGFIHDIKKIIKLLPAK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  I  LAK+   + V +++A+ N     I+        + +   ++ IL
Sbjct: 179 RQNLMFSATFSDEIRKLAKSLVNNPVEISVAAPNATAERIEQTLYAAEKTHKPRMLMQIL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       IVF  T+   +R  K L +  F   A+ G  SQ  R+ AL   + G  +V +
Sbjct: 239 RNLNLPQVIVFSRTKHGANRLVKQLDKDGFLAAAIHGNKSQGARTKALSDFKSGAVQVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  VI+ +L    E+ +HR GRTGRAG+ G ++ ++     R  + +
Sbjct: 299 ATDIAARGLDIEKLPYVINYDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFRTLKAI 358

Query: 360 FREANVSVVWEPAPSVEAIR 379
            +     +        + + 
Sbjct: 359 EKLIGQPIERRTLDGFDEVE 378


>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
 gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 441

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 184/392 (46%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+  
Sbjct: 10  DLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +     A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      +  +R+      +    A   +    +   +     
Sbjct: 188 SATLEGDAIKDFAERLLNEPIEIESDPSRRERKKILQWYYRADDLKHKTALLCHQLKQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATD+
Sbjct: 248 VTRSIIFVRKRERVHELVSWLHEAGINSCYLEGEMVQAKRNEAIKRMSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  V + +L    +  LHR GRTGRAGRKG ++  +  +      ++ R  
Sbjct: 308 AARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKISRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPL 391
           N      VV E  P  +A   +   +  +  L
Sbjct: 368 NEPLKPRVVEELRPETKAPSAKTTGKPSKKVL 399


>gi|242280865|ref|YP_002992994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123759|gb|ACS81455.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 517

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 152/472 (32%), Positives = 240/472 (50%), Gaps = 18/472 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +P  I  AL + G+  LT VQ   L   L  +D++V A+TGSGKT AF L L   L  
Sbjct: 38  DELPPSILNALDKTGWDKLTPVQSKSLPYQLYNRDLMVQAKTGSGKTGAFVLPLLEKLDP 97

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   +   AL + PTRELA QV RE E ++  +G+ V    GGV    +R +L+ G
Sbjct: 98  N------INYTQALILVPTRELARQVEREAEKIFEGSGLRVLSVYGGVGYGHQREELEKG 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR-RML 183
           AH+VVGTPGR+ DH+  +  ++  L+ ++ DEAD ML +GF  D+  +    P++     
Sbjct: 152 AHMVVGTPGRILDHLLKRTFDLEDLETLIFDEADRMLSIGFYPDMREVKSYLPRRPISTY 211

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  L+K +      ++++S+    ++ID+    V    ++  ++ IL    
Sbjct: 212 MFSATFPEHVIRLSKEFMYKPQMLSLSSKQVHVTEIDHAYYEVPSMGKERQLMRILEMEN 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AI+FC+T+A+V   T VL    F    L+ +LSQ +R   L  +RDG  R  +ATD+
Sbjct: 272 PTSAIIFCNTKANVEFVTAVLNNFGFNAADLTSDLSQSKRERVLAQLRDGSVRFLVATDI 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+PDL  VI  E   + E+ +HR+GRTGRAG  G+++ ++    +   +R+    
Sbjct: 332 AARGIDVPDLSHVIMYEPPEDKESYIHRAGRTGRAGSSGVAISLVDVIQKIELQRIATAY 391

Query: 364 NVSVVWEPAPSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           N++      P  + + E   +R+        +    L+  +    K +   LA+ D + I
Sbjct: 392 NINFEIRELPDDKQVLETINERLTTILEGKFRSRTILERERIGRYKDLVRQLAEDDEQCI 451

Query: 417 AAGFL--RIHRAGLCAPEEITPVSLVSGRD--RFRDDSRAFKVGGGSRDNFK 464
             G L   +++  L A  E  P      +   R R ++   K  GGS  N  
Sbjct: 452 LVGMLLDELYQKSLHARAEQPPAPKPRPQRQSRPRKNNYRGKPKGGSSTNKG 503


>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 471

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 228/469 (48%), Gaps = 14/469 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     E L++ G+   T++Q   +   L   DV+  AQTG+GKT AF L +   +   N
Sbjct: 10  LSSACVEHLTQIGFTEPTAIQIQAIPQLLSGHDVVGLAQTGTGKTAAFSLPMLEQVNPAN 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+QV + +E       + V    GG S+ R+ + L+ G+ 
Sbjct: 70  ------RYVQALVLTPTRELAMQVSQAMESFNTDKRLYVTSVYGGQSIDRQIQRLKRGSQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D I   GL +  L  +VLDEADEML++GF  D+E IL  +P +R+   FS
Sbjct: 124 IVVGTPGRIIDLIERGGLVLDRLSIMVLDEADEMLNMGFIQDVETILSHTPDERQTAFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT+ PAI  L+  + K  V V++ ++    + I      +     +  A++ IL     +
Sbjct: 184 ATMEPAIQKLSTRFLKSPVTVSVEAKTSSTARIKQIAYTVPPGWSKPRALMPILEMEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI+F  TR + +  T+ L           G+L+Q +R   LQ  +  + R  +ATD+AA
Sbjct: 244 SAIIFVRTRRTAAELTRQLQAAGHSADEYHGDLTQPQRERLLQRFKQRQVRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL  VI+ EL  N ++ +HR GRTGRAG++G +V ++    + +  R+ +    
Sbjct: 304 RGIHVDDLSHVINYELPDNLDSYVHRIGRTGRAGKEGRAVSIVMTLEKYKLSRIEKRFKK 363

Query: 366 SVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           SV +   P+   I  R  +++   +++ +  + +      +V  L  ++D   IAA  L+
Sbjct: 364 SVEYCKIPTQAQIAARHLEKLQARVREAVTSERV-ASFLPIVSQLSEEYDIRTIAAAALQ 422

Query: 423 IHRAGL---CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           +            E       + + +     R  K     +   +    
Sbjct: 423 MAYDQARPTHLRNEDHSDRKPTPKPKLLPSRRQSKEADVQKAAVEEGVR 471


>gi|332704960|ref|ZP_08425046.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
 gi|332356312|gb|EGJ35766.1| DNA/RNA helicase, Superfamily II [Lyngbya majuscula 3L]
          Length = 469

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 217/466 (46%), Gaps = 10/466 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +     L + G+   T++Q   +   L   DVL  +QTG+GKT AF L +   +  + 
Sbjct: 10  LSESCVSQLEKIGFTTPTTIQAQAIPELLNGHDVLGMSQTGTGKTAAFSLPMLDRIDLDK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV + +        + +    GG S+ R+ R L  GA 
Sbjct: 70  ------RTVQALILTPTRELAQQVNQAIRDFSEDRRLHILTVCGGQSIERQIRMLYKGAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L + +L  VVLDEADEML +GF DD++ IL  +P++R+   FS
Sbjct: 124 IVVGTPGRVIDLLDRGDLKLENLSWVVLDEADEMLSMGFIDDVKKILQQTPEERQTTCFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+   I  L   + K  V V +       + I+ R  +V     +  A+  IL     +
Sbjct: 184 ATMPRPIQELVSKFLKSPVTVKVQQSKAAPARIEQRVYMVPRGCSKIRALHPILELEDPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  TR + +  T  L      V    G+LSQ +R   L   R  + R  +ATD+AA
Sbjct: 244 ASIIFVRTRKAAAELTNQLQAAGHSVDEYHGDLSQSQRERLLYRFRKNQVRWVVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ +L    E+ +HR GRTGRAG+ G ++ +I    +R+  ++ R+   
Sbjct: 304 RGLDVDHLTHVINFDLPDQVESYIHRIGRTGRAGKTGTAITLIQPFERRKLYQIERKVRQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +     P+   I  R  +R+  +     S +       +V  L  ++D   IAA  L++
Sbjct: 364 RLEVTRIPTRSQIETRRLERLQAELREALSGERMASFLPVVRELEEEYDAHAIAAAALQL 423

Query: 424 HRAGLCAPEEITPVSLVSGRDRFR-DDSRAFKVGGGSRDNFKGSSW 468
                  P        +  R + R +  +  +     +   +  S 
Sbjct: 424 FYDKTQPPISDDLEERMVERPKLRLNTDKRHRTEKPRKPVIQNQSR 469


>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
 gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
           JA2]
          Length = 483

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/409 (34%), Positives = 216/409 (52%), Gaps = 2/409 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   +  A+++ GY  +T +Q   +   L  +DV+ +AQTG+GKT AF + L   +L  E
Sbjct: 24  LDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQKMLRHE 83

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL +APTRELA QV   ++     T +  AV  GGV +  +  +L+ G
Sbjct: 84  NTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTAELKAG 143

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL DHI  +   ++ ++ VVLDEAD MLD+GF  D++ IL   PK R+ L+
Sbjct: 144 VEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPKTRQTLL 203

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y +D V V +A  N   S ++ R   V   D+   +  ILR    
Sbjct: 204 FSATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGVGDDDKRATVRQILRQREL 263

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +++   +R  +       +  AL G+ SQ ER  AL   + G   + +ATDVA
Sbjct: 264 SQAIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVDLLVATDVA 323

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V + ++  N E+ +HR GRTGRAG  G++V ++ ++  R    + +   
Sbjct: 324 ARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTRLIGDIEKLIK 383

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             +  EP    +    R  +R  ++       +  E+          DP
Sbjct: 384 KKIEIEPFEIEDDRARRPRRRFDEERELAPRAESVERAPRRAAQPPADP 432


>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 598

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 185/371 (49%), Gaps = 3/371 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + +  AL+   Y   T++Q   + P +  +D+   AQTG+GKT AF L L  
Sbjct: 2   SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61

Query: 61  TLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L+    +       P AL ++PTRELA Q+   +               GGVS   + +
Sbjct: 62  RLIKNPRQGKLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQNSLTIYGGVSQVPQVK 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRLCD ++   +N+S ++  VLDEAD MLD+GF  DI  I+   P++
Sbjct: 122 GLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRMLDMGFMPDIRRIIAKLPQQ 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT+ P I  LA     D V +NI  E      I      V    +   + ++L
Sbjct: 182 KQTLLFSATMPPEIQKLASQLLHDPVEINIEPERATADGITQSLYYVPTKHKPELLASVL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      A+VF  T+   ++    L +   +V A+ G  SQ  R   L   ++G  +V +
Sbjct: 242 KREEVTRAVVFVRTKHGCNKAALQLEKTGLKVDAIHGNKSQSARQRTLYAFKNGHIQVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L   PE  +HR GRTGRAG+ G+++       +     +
Sbjct: 302 ATDVAARGLDVTGVSHVINYDLPMEPETYVHRIGRTGRAGKSGIAISFCDDEQRGLLRDV 361

Query: 360 FREANVSVVWE 370
            R     +  E
Sbjct: 362 QRILGKKIPVE 372


>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517223|gb|EAS19880.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 425

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 189/369 (51%), Gaps = 2/369 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + I  AL ++GY N T +Q   +   L+ KD+L  AQTG+GKT AF + + 
Sbjct: 1   MTFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L           +  AL + PTRELA+Q+    +     T +   V  GGV   ++  
Sbjct: 61  QHLYNSAPP-KGRRSIKALVVTPTRELAIQIDENFKAYAKYTDIRNTVIYGGVKQAQQVN 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  ++V TPGRL D I    + + H++  VLDEAD+MLD+GF  DI+ +L   P +
Sbjct: 120 RLKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQMLDMGFIHDIKKLLKLLPHE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+   I  L++    D  RV IA E      ++ +   V   ++   ++ +L
Sbjct: 180 RQSLFFSATMPKTIVELSRQILGDFERVTIAPEKTTAEKVEQQIYHVNKKNKTKLLIELL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+   ++  K L +      A+ G  SQ  R  AL   ++G+ +  +
Sbjct: 240 ETKLLDSTLVFSRTKHGANKIVKDLEKAGIGSAAIHGNKSQAARQRALGAFKEGKIQTLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  V++ +L +  E+ +HR GRTGRAG  G++V       +   + +
Sbjct: 300 ATDIAARGIDIDELSYVVNYDLPNVAESYVHRIGRTGRAGASGLAVSFCMLEERPFLKDI 359

Query: 360 FREANVSVV 368
            +     + 
Sbjct: 360 EKLIKQQIP 368


>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 426

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 3/378 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  A++++GY   T +Q   +   L   D+L +AQTG+GKT  F L +
Sbjct: 1   MTKFNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L ++    S      AL + PTRELA QVG  +        +  A+  GGV ++ + 
Sbjct: 61  LQRL-SDTPVSSGRRPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH+  K +++S ++ ++LDEAD MLD+GF  DI  +L   PK
Sbjct: 120 SMLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  LA +       + +A  N     ++    L+  S +   + ++
Sbjct: 180 KRQNLLFSATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   +R  + L +   +  A+ G  +Q  R+ AL   + GRARV 
Sbjct: 240 IGSQNWQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL   PE+ +HR GRTGRAGR G +V ++    +++   
Sbjct: 300 VATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRD 359

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +  E     E
Sbjct: 360 IERLLKRPIAKEVIAGYE 377


>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
 gi|154087752|gb|EDN86797.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
           43184]
          Length = 419

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 185/389 (47%), Gaps = 9/389 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + I +AL +  Y   T +Q   +   L   D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     R        AL + PTRELA+Q+G         T V   V  GGV    +   
Sbjct: 62  KIEERISR-GRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D I    + +  L+  VLDEAD MLD+GF  DI+ IL   P+KR
Sbjct: 121 LERGVDVLIATPGRLLDLINQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V   ++ N + N+L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T+    +  +VL +      A+ G   Q  R  AL   +D   RV IA
Sbjct: 241 DRSLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+  L  VI+ +L + PE  +HR GRTGRAGR G++            + + 
Sbjct: 301 TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ 360

Query: 361 REANVSVV------WEPAPSVEAIRERDA 383
           +     V       +E     EA+ E+  
Sbjct: 361 KLIGKEVPVAGGHMFETVEVKEAVAEKKK 389


>gi|73540223|ref|YP_294743.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 506

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/384 (33%), Positives = 200/384 (52%), Gaps = 7/384 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L + 
Sbjct: 1   MSFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +     A  AL + PTRELA QV   +        +   V  GGV ++ +  
Sbjct: 61  QLLSESAPQRQGKPAVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIE 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV TPGRL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL+  P K
Sbjct: 121 QLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA     +   + +A  N     +  R   V    +   + +++
Sbjct: 181 RQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRVYPVDRERKRELLAHLV 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  R+ +
Sbjct: 241 REHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRA 356
           ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +     R  
Sbjct: 301 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRDI 360

Query: 357 ERLF-REANVSVV--WEPAPSVEA 377
           ERL  R+   +V+  +E  P++ A
Sbjct: 361 ERLIKRKLEQTVLTGFEVDPTIAA 384


>gi|330957006|gb|EGH57266.1| helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 630

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 190/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV  + + + + 
Sbjct: 68  VPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGTNPQVQAMA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  + + + + +++   
Sbjct: 188 LLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLLAHLITVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLIFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDVRIMVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TRQKIP 373


>gi|294893710|ref|XP_002774608.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880001|gb|EER06424.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 520

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 180/376 (47%), Gaps = 9/376 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   L++ G+V  T +Q       +  +D++  A+TGSGKT+AF L    
Sbjct: 112 TFEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIV 171

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ+  E       + +    C GGV    + RD
Sbjct: 172 HINAQ-PYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARD 230

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I       R
Sbjct: 231 LSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDR 290

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVN 237
           + L++SAT    +  LA++  ++               H+   Y  V+     RD   V 
Sbjct: 291 QTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKVL 350

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R       ++F  T+      T+ L    +  + + G+  Q+ER   L   + G++ +
Sbjct: 351 LERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPI 410

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQR 354
            IATDVA+RG+D+ D+  V++ +     E+ +HR GRTGRAG KG +      +   M R
Sbjct: 411 MIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTPDKIKMAR 470

Query: 355 RAERLFREANVSVVWE 370
              ++ REAN +V  E
Sbjct: 471 DLVQILREANQTVSPE 486


>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
          Length = 458

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIKREIIEQPKIKRVDE 382


>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
 gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
          Length = 488

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
 gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           576]
          Length = 485

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           112]
          Length = 419

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           NCTC 13177]
          Length = 430

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           7894]
          Length = 416

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           B7210]
          Length = 427

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           14]
 gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           9]
          Length = 414

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           DM98]
          Length = 434

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|126440586|ref|YP_001057787.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
 gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           668]
          Length = 485

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126454229|ref|YP_001065030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
 gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106a]
 gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           S13]
 gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1106b]
 gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           1710a]
          Length = 485

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|53718338|ref|YP_107324.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
 gi|126450332|ref|YP_001081986.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC
           10247]
 gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
           K96243]
 gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
 gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           305]
 gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
          Length = 485

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 368 EIPQQVIPGFE 378


>gi|94498979|ref|ZP_01305517.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
 gi|94428611|gb|EAT13583.1| DEAD/DEAH box helicase-like protein [Oceanobacter sp. RED65]
          Length = 457

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 186/367 (50%), Gaps = 1/367 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A++E+GY + T +Q   +   L  +D+L +AQTG+GKT  F L +   LL   
Sbjct: 8   LAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPILQKLLDAP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P  A   L + PTRELA QV   +      T +   V  GGV ++ + + L+ G  
Sbjct: 68  KGVKPNQA-RVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQRLRRGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      ++   L  ++LDEAD MLD+GF +DI  I+   PKKR+ LMFS
Sbjct: 127 ILVATPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKRQNLMFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK   ++ V V++  +N     +    + V    + N ++++L       
Sbjct: 187 ATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKINLLIDLLAKEKWHQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L++      A+ G  SQ  R+ AL   +    +V +ATD+AAR
Sbjct: 247 VLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L +  EN +HR GRT RAG  G ++  +  +       +       
Sbjct: 307 GIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLADIQNFIGEP 366

Query: 367 VVWEPAP 373
           +     P
Sbjct: 367 IERLDYP 373


>gi|288924465|ref|ZP_06418438.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288344188|gb|EFC78744.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 459

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/437 (27%), Positives = 217/437 (49%), Gaps = 15/437 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+E GY   + +Q   +   L  +DV+  AQTG+GKT AF L + S +        
Sbjct: 29  VLRALTELGYEVPSPIQVGTIPALLEGRDVVGLAQTGTGKTAAFALPILSRIDV------ 82

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
            +++  AL +APTREL +QV             +  +   GG +   +   ++ GA +VV
Sbjct: 83  RSTSTQALVLAPTRELVLQVAEAFGRYAHHLPGLHVLPVYGGQAYAPQLAGIRRGAQVVV 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+    L++  L+ +VLDEADEML +GF+++++ IL  +P  +++ +FSAT+
Sbjct: 143 GTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  +++ Y +D V + + +     ++   R + VA   + +A+  +L     +  I+
Sbjct: 203 PAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEPFEAMII 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+++     + L    F   A++G+L Q +R   +  +RDG   + +ATDVAARG+D
Sbjct: 263 FVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAARGLD 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++    +     + +     +  
Sbjct: 323 VERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIEKATRQPLAE 382

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDP--EKIAAGFLRIHR 425
              P+ E +  R   +                 + +V     +HD     IAA    + R
Sbjct: 383 MELPTAEDVNARRVAKFHDAITAALDAPAHAVFRDLVLGYTREHDVPLADIAAALAVMTR 442

Query: 426 AG----LCAPEEITPVS 438
                 L  P+   PV 
Sbjct: 443 QEPGEFLLPPDSAPPVR 459


>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
          Length = 764

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 216/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   TS+Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 192 NLSRPLLKAITAMGFKQPTSIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 251

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 252 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 308

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 309 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 368

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 369 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 428

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 429 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 488

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 489 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 548

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 549 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 604

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E         R + +
Sbjct: 605 LEKGKEAVVQEPERNWFQTKEERKKEK 631


>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase domain-containing protein [Dinoroseobacter
           shibae DFL 12]
 gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
           12]
          Length = 493

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 222/474 (46%), Gaps = 19/474 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+SE GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L +APTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  ITML---RKGRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 LLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +  +  RV +A ++     I    V    S RD A    
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFK 237

Query: 239 LRYHG-----------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            +               +NAI+FC+ +  V    K L +H +    + G+L Q +R+  L
Sbjct: 238 EKREMLRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTL 297

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              RDG  +  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGRKG ++ +
Sbjct: 298 DQFRDGTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLML 357

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMV 404
                 +    +     + +    AP + A    R +D +R   +     S +  + +  
Sbjct: 358 AVPADDKLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERPEPEKRERRSRRRTKPEPA 417

Query: 405 DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                   P    A            P+ + P +  +   +     RA   G  
Sbjct: 418 KANAPAQAPVAAQAETAVAEAEEAPIPDAVLPAARKTETPQRGRKGRARDTGPK 471


>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
 gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
          Length = 442

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 197/418 (47%), Gaps = 10/418 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+             +      A   R+      +    A   +    + +
Sbjct: 181 RKQTLLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL 240

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 +   A+VF   R  V      L E       L GEL Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINNSYLEGELVQAKRNEAIKRVVDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL 360

Query: 357 ERLFREANVSV----VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            ++ R     +    + E  P+  A  E+   +  +  L   + Q +++K  +    K
Sbjct: 361 GKIIRYVKEPIKARVIDELRPTTRAPSEKLKGKPSKKVLAKRTEQKNKQKAEEKPRVK 418


>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 510

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 194/372 (52%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           + + +  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  + 
Sbjct: 8   LSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQRLNSMP 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N   S   A  AL + PTRELA QV   +        +   V  GGV ++ +   L++G
Sbjct: 68  ANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIGALRSG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL DH++ K +++SHL+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+
Sbjct: 128 VDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I TLA N       + +A  N     +  +   V    +   + ++++ H  
Sbjct: 188 FSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHLIKQHNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+A
Sbjct: 248 FQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  +  + + +   
Sbjct: 308 ARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLIK 367

Query: 365 VSVVWEPAPSVE 376
             V  E     E
Sbjct: 368 RPVPQEVIAGFE 379


>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 477

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 215/474 (45%), Gaps = 9/474 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  A++E GY   T +Q   +   LR  D+L +AQTG+GKT  F L + 
Sbjct: 5   TSFADLGLADSLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPIL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L         A  P  L + PTREL  QV   ++     TG+   V  GGV+++ +  
Sbjct: 65  HMLSQNKPAKRSAGRPRCLILTPTRELTAQVAESVQVYGKHTGLTSMVMFGGVNINPQIS 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK 
Sbjct: 125 ALRKPVDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKS 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA+    +   V++   N     +     LV  + + + + +++
Sbjct: 185 RQNLLFSATFSDEIRELARGVLHNPGEVSVTPRNTATELVTQTVYLVDQAHKRDLVSHLI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +DG   V +
Sbjct: 245 SESGWHQVLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALAGFKDGSVAVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + +
Sbjct: 305 ATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDSSEIKLLKAI 364

Query: 360 FREANVSVVWEPA----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            R    ++  +      P V A+ E + +    D         + +              
Sbjct: 365 ERLIKKTIDRKTVDGWTPPVGAVAEPEPR---DDDERGRRGGFNGRGNGGGNRNSRGGRS 421

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             A      +A        +P    S       D+R+     G+R+        
Sbjct: 422 SGAARSNAPQAAEGRRPAASPKPATSPAAAKPRDNRSNNAPRGARNAPPRGVLL 475


>gi|317507153|ref|ZP_07964911.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254555|gb|EFV13867.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 530

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/475 (29%), Positives = 225/475 (47%), Gaps = 17/475 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + EA+ E GY   + +Q   +   L  +DV+  A TG+GKT AF L + S
Sbjct: 10  TFADLELHPSVLEAVREVGYETPSPIQAQTIPALLDGRDVVGLAATGTGKTAAFALPVLS 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-R 119
            +  +  R      P AL +APTRELA+QV        +K   V  VCI G   +  + +
Sbjct: 70  RIDPKLRR------PQALVLAPTRELALQVSEAFSRYASKMPQVSVVCIYGGGAYPVQLQ 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA +VVGTPGR+ DH+    L +  L+ +VLDEADEML +GF++D+E +L ++ ++
Sbjct: 124 ALGRGAQVVVGTPGRVVDHLERGTLKLGELRFLVLDEADEMLKMGFQEDVERVLGAAAEE 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ +FSAT+  AI  ++K Y  + V V + +      +I+ R  LVA   + + +  IL
Sbjct: 184 KQVALFSATMPGAIRKISKTYLHNPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRIL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+ +     + L    F    L+G++ Q  R   +  +R+G+  + +
Sbjct: 244 EVEPFSAMIVFVRTKQATEELAERLRARGFAARPLNGDIPQAARERTVSALREGKIDILV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +   + E+ +HR GRTGRAGR G+S   +    +     +
Sbjct: 304 ATDVAARGLDVERITHVFNYDAPHDTESYVHRIGRTGRAGRTGVSYLFVTPRERSMIGAI 363

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            R     +   P P+V  +      +    + + L L  ++   + + D     + P   
Sbjct: 364 ERATRQPLAETPFPTVADVNAGRIAKFRDSITEALGLPGVEQFRRLVEDYERENNVPMAD 423

Query: 417 AAGFLRIHRAG-----LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            A  L     G     L    +         +DR          G G +D  KG 
Sbjct: 424 IAAALAAQTRGGEEFLLSEDADEQEFRKRPKQDRGEGRWSKDGEGRGGQDGRKGG 478


>gi|78186849|ref|YP_374892.1| DEAD/DEAH box helicase-like [Chlorobium luteolum DSM 273]
 gi|78166751|gb|ABB23849.1| DEAD/DEAH box helicase-like protein [Chlorobium luteolum DSM 273]
          Length = 418

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 199/381 (52%), Gaps = 7/381 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++   + I  AL E GY + T +Q   +   L+  D+L  AQTG+GKT AF + +
Sbjct: 1   MK-FSSLHIIEPILRALEEEGYTHPTPIQTEAIPLILKGSDLLGCAQTGTGKTAAFAIPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL E           +L + PTRELA+Q+G         TG+   V  GGV  + + 
Sbjct: 60  LQ-LLRERKAIDGKRKIRSLIVTPTRELAIQIGESFSAYGRHTGLTNTVIFGGVGQNPQV 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + PK
Sbjct: 119 NALRRGVDILVATPGRLLDLMNQGILHLHDIEILVLDEADRMLDMGFIHDIRKILAAVPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+ P I  L+    +   +V++   +     I+ +   V   ++   +V++
Sbjct: 179 ERQSLFFSATMPPEIQRLSSTILRHPAKVSVTPVSSTVDIINQQIYFVDRGNKSGLLVHL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    +  +VF  T+    +  + L +H     A+ G  +Q  R  AL   +  + RV 
Sbjct: 239 LQNPDIRTVLVFTRTKHGADKVVRHLEKHNITAEAIHGNKAQNARQRALSNFKSQKTRVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           +ATD+AARGID+ DLE VI+ E+S+  E  +HR GRTGRAG  G ++       +   R 
Sbjct: 299 VATDIAARGIDVDDLEWVINYEMSNIAETYVHRIGRTGRAGSAGTAISFCDAEEKEYLRD 358

Query: 356 AERLFREANVSVVWEPAPSVE 376
            E+L  ++   V   P P ++
Sbjct: 359 IEKLIAKSIPVVDSHPFPLMD 379


>gi|291409987|ref|XP_002721272.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Oryctolagus
           cuniculus]
          Length = 789

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 216/449 (48%), Gaps = 15/449 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 218 NLSRPLLKAISAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 277

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 278 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAP 334

Query: 126 HIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+        + ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 335 DILIATPGRLIDHLHNCPSFHLNSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 394

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 395 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 454

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  V +AT
Sbjct: 455 TFTDHVMLFTQTKKQAHRLHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDVLVAT 514

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ V++  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 515 DVAARGLDIEGVKTVVNFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 574

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    +R RD  + + +D   +  ++ +EK M      +    +I    
Sbjct: 575 AAKAPVKARILPQDVILRFRDKIEAMEKDVYAVLQLEAEEKAM------QQSEAQINTA- 627

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            R+   G  AP +    S    ++  + +
Sbjct: 628 KRLLEKGKEAPGQEPERSWFQTKEERKKE 656


>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 423

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 192/385 (49%), Gaps = 3/385 (0%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   + +   LSE  +   TSVQE  +   L  KDVL  AQTG+GKT AFGL + 
Sbjct: 6   KSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLPII 65

Query: 60  STLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LLA  D   P    + AL + PTRELA QV   +      T + V V  GGVS+  + 
Sbjct: 66  QRLLATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAKGTDLKVVVAYGGVSMKVQT 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ GA I+V TPGRL DH+  K + +S  + +VLDEAD MLD+GF  DI+ IL    +
Sbjct: 126 DNLRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRMLDMGFMPDIKRILSRMNE 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT    I  +A    +    + +   N     +      V    +   +  +
Sbjct: 186 VRQTLFFSATFDNKIKAIAHRMMQSPSEIQVTPTNSTAETVKQMVYPVDKKRKSELLAYL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  
Sbjct: 246 IGSNNWQQVLVFTKTKQGTDALVKELKLDGIKAASINGDKSQGARQKALDDFKSGKVRAL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+  LE V++ ++    E+ +HR GRTGRAG  G+++ ++  +       
Sbjct: 306 IATDVAARGIDIQQLEQVVNYDMPYKAEDYVHRIGRTGRAGNSGLAISLMSHDEAYLLGA 365

Query: 359 LFREANVSVVWEPAPSVEAIRERDA 383
           + R  +  +  E     E   E+D 
Sbjct: 366 IERLLDTRLPQEWLKGFEPSPEQDV 390


>gi|219667645|ref|YP_002458080.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219537905|gb|ACL19644.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 428

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 192/414 (46%), Gaps = 7/414 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL+ +GY   T +Q   +   L   D+L  AQTG+GKT AF + +  +L       
Sbjct: 14  PIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLL 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL +APTRELA Q+            +   V  GGV    + R L+ G  I+V
Sbjct: 74  KGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILV 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    +++SH++  VLDE D+MLD+G   D++ I+   P++R+ ++FSAT+
Sbjct: 134 ATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATM 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA    K  V++ +  E      I+     V  +++   +   L+ +   + +V
Sbjct: 194 PVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVLV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K L +  F  VA+ G  SQ  R  AL   +  + R+ +ATD+AARG+D
Sbjct: 254 FSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV---S 366
           + +L  VI+  L   PE  +HR GRTGRAG  G ++       +     + +        
Sbjct: 314 IQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGKTLPE 373

Query: 367 VVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           V   P P V  +     +   Q     P    + +           AK +P KI
Sbjct: 374 VKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAHRAKPNPRKI 427


>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
 gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 478

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 124/414 (29%), Positives = 192/414 (46%), Gaps = 7/414 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL+ +GY   T +Q   +   L   D+L  AQTG+GKT AF + +  +L       
Sbjct: 64  PIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQSLAMGQGLL 123

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL +APTRELA Q+            +   V  GGV    + R L+ G  I+V
Sbjct: 124 KGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILV 183

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D I    +++SH++  VLDE D+MLD+G   D++ I+   P++R+ ++FSAT+
Sbjct: 184 ATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQNMLFSATM 243

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LA    K  V++ +  E      I+     V  +++   +   L+ +   + +V
Sbjct: 244 PVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKNNEYDSVLV 303

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+    +  K L +  F  VA+ G  SQ  R  AL   +  + R+ +ATD+AARG+D
Sbjct: 304 FSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVATDIAARGLD 363

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV---S 366
           + +L  VI+  L   PE  +HR GRTGRAG  G ++       +     + +        
Sbjct: 364 IQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQKRIGKTLPE 423

Query: 367 VVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           V   P P V  +     +   Q     P    + +           AK +P KI
Sbjct: 424 VKEHPYPLVNTVIVPKAKTSQQAAAARPQKPATAKTAAYSQQGAHRAKPNPRKI 477


>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
 gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
          Length = 539

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 132/392 (33%), Positives = 213/392 (54%), Gaps = 9/392 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   I +A+  +GY   T +Q   +   +   DV+ +AQTG+GKT  F L + +
Sbjct: 21  TFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILN 80

Query: 61  TLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+    +  SPA  P+ AL + PTRELA QV   +      T +   V  GGV ++ + 
Sbjct: 81  RLMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +V+ TPGRL DH++ K +N+  ++ +VLDEAD MLD+GF  D++ I++  PK
Sbjct: 141 QTLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
            R+ L+FSAT SP I  LAK++      + +A  N    +I      L +  D+  A+ +
Sbjct: 201 TRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVCH 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++       IVF +T+   +R  + L +      A+ G+ +Q ER+ +L+  + G   V
Sbjct: 261 LIQSKALSQVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEVTV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ DL  VI+ +L + PE+ +HR GRTGRAG KG +   + +  +R  +
Sbjct: 321 LVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERALK 380

Query: 358 RLFREANVSVVWEPA----PSVEAIRERDAQR 385
            + +    + V E      P   A RE  + R
Sbjct: 381 DIEKLIGKAFVREELEGFVPGARAPREERSGR 412


>gi|84516715|ref|ZP_01004073.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
 gi|84509183|gb|EAQ05642.1| ATP-dependent RNA helicase RhlE [Loktanella vestfoldensis SKA53]
          Length = 498

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/488 (28%), Positives = 220/488 (45%), Gaps = 24/488 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A++E GY   T +Q+  + P L  +DVL  AQTG+GKT AF L +
Sbjct: 1   MTKFSDMNLDPKVLKAVAETGYDTPTPIQDGAIPPALEGRDVLGIAQTGTGKTAAFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L +APTRELA QV    +     T +  A+ IGG S   + 
Sbjct: 61  ITLL---GRGRARARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGTSFKDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH+    L ++ +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRMLDMGFIPDIEEIFKRTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  +V +A     + +I    V+   S +       
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTNVNIKQGVVMFRASAKLREATEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +A V    K L ++ +    + G+L Q  R+  L+ 
Sbjct: 238 RALLRALINAEGDACSNAIIFCNRKADVDVVAKSLNKYGYDAAPIHGDLEQSHRTRTLES 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RD + R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G+++ +  
Sbjct: 298 FRDNKLRFLVASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGVAIMICS 357

Query: 350 QNMQRRAERLFREANVSVVW------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              ++  E + R     +          AP  E   E +A +  +      +        
Sbjct: 358 GRDEKNLEDVERLVQNPIPRLDNPLGVTAPVAEEATE-EAPKRSRSRSRRGAATDTPAAP 416

Query: 404 VDVLLAKHD---PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
             V  A  D      +AA   +                    RD         +   G R
Sbjct: 417 APVEAAAVDAPIATPVAAPVEKPAEPQQQRAPRPPRDEPAKPRDDQPRARYQDRRDNGPR 476

Query: 461 DNFKGSSW 468
               G   
Sbjct: 477 IIGLGDDT 484


>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 433

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 195/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L
Sbjct: 63  -MVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       ++   +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQKIRRITVPGYE-VGSRDL 382


>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 509

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 188/372 (50%), Gaps = 3/372 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  +   I  AL E  YV  T +Q   +   +  +DV+  AQTG+GKT +F L +
Sbjct: 1   MTSFQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R  P +    L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 61  LHRLLENRVRPQPKT-CRVLVLSPTRELSGQILDSFNAYGRHLRLSAALAIGGVPMGRQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  ++V TPGRL D ++G  + ++ ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 120 RAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPV 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA++  +D  RV +   +     I  R + +  S +   +  +
Sbjct: 180 KRQTLFFSATMPKDIAELAEHMLRDPARVAVTPVSSTAERITQRIIQLDHSAKPATLSEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  + L +      A+ G  SQ  R   L   R+G  R  
Sbjct: 240 LKSEPVNRALVFTRTKHGADKVVRGLVKAGIPSEAIHGNKSQNHRERVLASFRNGDIRTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + +L + PE  +HR GRT RAG  G ++ ++          
Sbjct: 300 VATDIAARGIDVDGITHVFNFDLPNIPETYVHRIGRTARAGADGTAISLVAGEENTYLRD 359

Query: 359 LFREANVSVVWE 370
           + R   V++  E
Sbjct: 360 IERLIRVTLPRE 371


>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 458

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
 gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
 gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
          Length = 458

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 480

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 131/400 (32%), Positives = 205/400 (51%), Gaps = 18/400 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  A+++ GY   T +QE  +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 2   TFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L +APTRELA QV   ++       + +A+ IGGVS   +++ 
Sbjct: 62  RLSRGRAR---ARMPRSLVLAPTRELAAQVADNVKLYAKNHKLNMALLIGGVSFEPQKKI 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA I++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE IL   P +R
Sbjct: 119 LDQGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRMLDMGFIPDIERILKLLPPRR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAIVN 237
           + L FSAT+   I  L   + +D  RV +    +    I              +  A+  
Sbjct: 179 QTLFFSATMPGEIKHLVDTFLRDPERVEVTRPAQTADTITQFILRVSDNQARTKREALRA 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +   G KN I+FC+ +  V    + L  H F    + G+L Q +R+  L   + G  R+
Sbjct: 239 AINRDGVKNGIIFCNRKRDVDIVARSLQRHGFSAAPIHGDLDQSQRTKTLAEFKSGELRL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P +  V + ++  N ++ +HR GRTGRAG+KG +V ++     +   
Sbjct: 299 LVASDVAARGLDIPAVSHVFNVDIPRNADDYVHRIGRTGRAGQKGEAVTLVSSEDNKALA 358

Query: 358 RLFR-------EANVSVVWEPAPSVEAIRERDAQRILQDP 390
           ++ +       E  +S     AP  EA     A+ + + P
Sbjct: 359 KVVKLIGKEPAELKLSGEAPEAPVAEA---SKAEAVDEKP 395


>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
 gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
          Length = 419

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/394 (32%), Positives = 203/394 (51%), Gaps = 10/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + +A+S++GY   + +Q   +   L  KDVL SAQTG+GKT  F L +  
Sbjct: 2   TFKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +   F       AL + PTRELA Q+ +E++   A T V   V  GGV+ + + R 
Sbjct: 62  IITKQP--FQRHRPVKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D       N+  ++ +VLDEAD MLD+GF  DI  IL   P KR
Sbjct: 120 LKQGTDILVATPGRLLDLHSQGVFNMKKVEFLVLDEADRMLDMGFVRDINKILAILPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA+++  + V V    EN     +         S + N ++ ++ 
Sbjct: 180 QNLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKLIT 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+   +R  + L +   +  A+ G  SQ  R+ AL   +DG  RV +A
Sbjct: 240 EGNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P L  VI+ EL + PE+ +HR GRT RAG  G ++ ++  +     + + 
Sbjct: 300 TDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYVKGIE 359

Query: 361 REANVSVV------WEPAPSVEAIRERDAQRILQ 388
           +     +       +E    ++ + ++ A    Q
Sbjct: 360 KLLGEKLNSITLEGFEQTEKLQDVLDKKAANKAQ 393


>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
 gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
          Length = 454

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 438

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 188/367 (51%), Gaps = 5/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     +A+ E+GY   + +QE  +   L  KDVL SAQTG+GKT  F L +   L    
Sbjct: 8   LSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQYL--SE 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA QV   +        +  AV  GGV    +   L+ G  
Sbjct: 66  TKHPKYRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATLKRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    K ++   +   +LDEAD MLD+GF  DI  I+   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA    K+ V V  A +N     + ++   +    +    + +++ +    
Sbjct: 186 ATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTEFTIKLIKDNNWNQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R T+ L +      A+ G  SQ  R+ AL+  +D   +V +ATD+AAR
Sbjct: 246 VLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREA 363
           G+D+P L  VI+ EL + PE+ +HR GRTGRAG KG ++ ++       Q+  E+L  E 
Sbjct: 306 GLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKEIEKLLNEK 365

Query: 364 NVSVVWE 370
             S+V E
Sbjct: 366 LTSIVVE 372


>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
           bacterium 1_7_47FAA]
          Length = 518

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 194/362 (53%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL ++GY+  + +QE  +   L  +D+L  AQTG+GKT AF L +   L+   
Sbjct: 8   LSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQNLMERP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+Q+   +E   A T +  AV  GGVS   + + L+ G  
Sbjct: 68  KNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQSLRRGID 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I    +++S ++  VLDEAD MLD+GF  D++ ++   PKKR+ L+FS
Sbjct: 128 ILVATPGRLLDLIGQHEIDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKKRQTLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     + V+V +   +     I+     V  +++   +V++L +    +
Sbjct: 188 ATMPDEIQALAAKLLHNPVKVEVTPVSSTVDLIETSLYYVDKANKWPLLVHLLEHEDVSS 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L +      A+ G+ SQ  R  AL   + GR RV +ATD+AAR
Sbjct: 248 TLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSGRLRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  VI+ +L + PE  +HR GRTGRAG  G ++       +   + + +    +
Sbjct: 308 GIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYVKDIEKLTGKT 367

Query: 367 VV 368
           + 
Sbjct: 368 IQ 369


>gi|89092720|ref|ZP_01165673.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89083232|gb|EAR62451.1| putative ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 427

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 189/386 (48%), Gaps = 2/386 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY   T +Q   +   LR  D+L  AQTG+GKT +F L +   L    
Sbjct: 11  LCPELQFTLKNLGYEQPTPIQSQAIPLVLRGDDLLAEAQTGTGKTASFALPIIEKL--SK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL +APTRELA+QV           G+ V    GGV V  + + L+ G  
Sbjct: 69  NPIDGYRPVRALVLAPTRELAIQVADNTLEYGRDLGMRVISVYGGVPVENQIKRLKRGTD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +R K +++  L+ +VLDEAD MLDLGF D I+ I+D +   R+ L+F+
Sbjct: 129 ILVATPGRLLDLLRQKAISLEKLEYLVLDEADRMLDLGFIDPIQKIMDYAADDRQTLLFT 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   ++  LA+ Y  +  ++ +   N     I   A  V    + + +  ++       
Sbjct: 189 ATADESVEVLAEFYLNNPTKIKVTPRNSTAKQIRQFAYQVDYGQKADILSYLITEGKWGQ 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  V   T+ L +      A+ GE SQ+ER   L     G   V +ATDVAAR
Sbjct: 249 TLVFVRTKKRVDELTQYLCKEGINAAAIHGEKSQRERVRMLNEFIAGDLHVLVATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE  +HR GRTGRAG  G +V ++    +   +R+ +     
Sbjct: 309 GLDIESLPYVVNYDLPNQPEAYVHRIGRTGRAGETGEAVSLVAPAEREFLQRIEKLIKQK 368

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLF 392
           +   P P +E  +  +       P+ 
Sbjct: 369 IKLRPVPRIEDGKRLEIDDFADKPMK 394


>gi|313202537|ref|YP_004041194.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441853|gb|ADQ78209.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 408

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P    + + L    +   T VQ   +   L+++DV+  AQTG+GKT AF L L   
Sbjct: 3   FDELPLCDAVLDGLQAMNFKEATPVQAETIPVILQKRDVIACAQTGTGKTAAFILPLLHN 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRER 118
           L AE       +   A+ +APTRELA Q+ +++E     T        GG        +R
Sbjct: 63  LQAEPLAADKVN---AIIMAPTRELAQQIDQQMEGFSYFTSFSSVAVYGGNDASAWDTQR 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNGA +V+ TPGRL  HI    ++ SH+K  +LDEAD MLD+GF DDI  +++  PK
Sbjct: 120 RGLQNGADVVIATPGRLLSHINLYDIDFSHVKYFILDEADRMLDMGFFDDIMQVVNRLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ +MFSAT+ P I  LAK    + V V   + +R    I   A +   + +   I ++
Sbjct: 180 DRQTIMFSATMPPKIRLLAKTILNNPVEV-KIAVSRPPESIMQTAYICYEAQKHGIIRHL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                A   I+F  ++  V    K   +    V  +  +L Q +R + +   ++ R  + 
Sbjct: 239 FAEQEATKVIIFSGSKLKVKELFKTFRQMGLSVGEMHSDLDQAQRDHVMHEFKNNRVSIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA  KGMS+  + +  Q + ++
Sbjct: 299 VATDIVSRGIDIDDISLVINYDVPHDAEDYVHRIGRTARASAKGMSITFVSEEEQYKFKQ 358

Query: 359 LFREANVSVVWEPAP 373
           +       +   P P
Sbjct: 359 IEDFLEKDIYKIPMP 373


>gi|300690871|ref|YP_003751866.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
 gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           PSI07]
          Length = 495

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 16  TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 75

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL E N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 76  NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYGKYTALRSAVVFGGVDMNPQT 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 136 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 196 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 255

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 315

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 355 RAERLFREANVSVVWEPA----PSVEA-----------------IR------ERDAQRIL 387
               + +    ++  E      P+ E                  IR      ER+  R+L
Sbjct: 376 LLADIEKLIKRNLPRETLTDFDPTGEQARERERRERDERRNRTEIRRSRERDERNGARVL 435

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +   + +  E            P + A        AG     +    +L+ G  R R
Sbjct: 436 DHTVVRPAFRASEDPFFSRPYESSAPAETAETAKLAQAAGHPRSAKRPIAALLGGVPRKR 495


>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 460

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ V++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 417

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 193/371 (52%), Gaps = 7/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + +    +  +T VQE  +   L  KD++  AQTG+GKT A+ L L S L+AE
Sbjct: 7   NLDENVLQGIEAMNFQEMTPVQEQTIPVILEGKDIIGCAQTGTGKTAAYTLPLLSRLVAE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQ 122
            +   P +   A+ + PTRELA Q+  + E       +   V  GG       ++++ L 
Sbjct: 67  GN---PDNHIRAVIMVPTRELAQQIDMQFEGFSYFLPISTTVVYGGGDGAGWDQQKKGLL 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +V+ TPGRL  HI   G+++S +   +LDEAD MLD+GF DDI  I+   P KR+ 
Sbjct: 124 MGADVVIATPGRLLSHIANSGIDLSQVSYFILDEADRMLDMGFFDDIMQIVKQMPTKRQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+ P I  LAK   KD   +   + ++ +  I   A +   + +   I  +    
Sbjct: 184 ILFSATLPPKIRQLAKQILKDPAEI-NIAISKPNEAIIQSAYICYETQKMAIIQELFSKP 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F S++  V      L      V A+  +L Q++R   +   ++G+  + +ATD
Sbjct: 243 NRKKTIIFSSSKQKVKDLAYSLKRMKLNVAAMHSDLEQEQREAVMLDFKNGKTDILVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+ D+ LVI+ ++  +PE+ +HR GRT RA   G+++  + +  Q +  ++   
Sbjct: 303 IVARGIDIDDIGLVINYDVPHDPEDYIHRIGRTARANADGVAITFVCEPEQGKFHKIEEF 362

Query: 363 ANVSVVWEPAP 373
               +   P P
Sbjct: 363 IEKDIYKIPLP 373


>gi|326940167|gb|AEA16063.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 455

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPIQREIIEQPKIKRVDE 379


>gi|313202811|ref|YP_004041468.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312442127|gb|ADQ78483.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 451

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 184/368 (50%), Gaps = 2/368 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  ++ + I  ALS  GY   T +QE  +   L+  D+L  AQTG+GKT AF + +  
Sbjct: 2   TFDKLDLIEPILNALSHEGYTQPTPIQEISIPIVLKGHDLLGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL + PTRELA+Q+G           +   V  GGV    +   
Sbjct: 62  LLQLNKGAERAPRKIKALIVTPTRELAIQIGESFAAYGRFMNLRHTVIFGGVPQGAQVGA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D      + ++ L   VLDEAD MLD+GF  D++ ++   P KR
Sbjct: 122 LKMGVDILIATPGRLLDLQTQGYVKLNELSIFVLDEADRMLDMGFIHDVKKLIKIIPAKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+  +I  LA +   +   V +   +     I      V   ++ + ++++L+
Sbjct: 182 QSLFFSATMPESIRVLAGSILTNPEEVAVTPVSTTAETIQQEMYFVDAVNKKDLLIHLLQ 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K A+VF  T+    +  ++L +   +  A+ G  SQ  R NAL+  +D   RV +A
Sbjct: 242 DKSIKTALVFTRTKHGADKVQRLLTKARIKAEAIHGNKSQNARQNALRNFKDRTTRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ DL LVI+ E+ + PE  +HR GRTGRAG  G +V             + 
Sbjct: 302 TDIAARGIDIDDLNLVINYEIPNIPETYVHRIGRTGRAGLDGKAVSFCDAEEHEYLRDIQ 361

Query: 361 REANVSVV 368
           +  ++ + 
Sbjct: 362 KLISIQIP 369


>gi|148906285|gb|ABR16298.1| unknown [Picea sitchensis]
          Length = 802

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 168/588 (28%), Positives = 264/588 (44%), Gaps = 41/588 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q + EAL+ RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  +
Sbjct: 150 NLSQELVEALANRGITHLFPIQRAVLVPALEGRDLIGRAKTGTGKTLAFGIPIIERLTKD 209

Query: 66  NDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           N            P  L +APTRELA QV +E +          A   GGVS   ++  L
Sbjct: 210 NKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKESAPFLS--TACIYGGVSYVSQQNAL 267

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D +  K L ++ ++ +VLDEAD+ML +GF +D+E ILD+ P +R+
Sbjct: 268 ARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLPAERQ 327

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-----LVALSDRDNAIV 236
            ++FSAT+   +  L++ +  + + +++  EN +      +         + S R     
Sbjct: 328 SMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGD 387

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  +      IVF  T+   +    +         AL G++SQ +R   L   R+G+  
Sbjct: 388 LITVFAKGGKTIVFTQTKR-DADEISLGLSSTIACEALHGDISQHQRERTLAGFREGKFS 446

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ +++LVIH E  ++PE  +HRSGRTGRAG++G+++ + P N +R+ 
Sbjct: 447 ALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKV 506

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L  E      +   P  E + E   Q + +    L S+  +   +      K   EK 
Sbjct: 507 RSLEHEVGCRFEYINPPRQEDVLETSTQHVAK---ALGSVHPELINIFLPTANKLMEEK- 562

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                     G  A            +          + G  +    + S+   +  G +
Sbjct: 563 ----------GTNALAAALARLSGFSQPPSSRSLITHEEGWTTLQMTREST---MPDGRQ 609

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPD----LTFVEVSADGVDLLRRTVKLD---- 528
           Q   AR LM +L          +G IR   D        ++  D    L     L     
Sbjct: 610 Q-LNARELMGILSEMWPAAADKVGKIRTYGDGKAEGAVFDLPKDVAKELLLKQALPGYTV 668

Query: 529 -KGIQLKYLGGEKP--DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
            K  QL  +  E+P  D RG  S    S  S  G   R     G   N
Sbjct: 669 SKITQLPVMEDEEPPSDRRGRYSDRSASYRSFGGGRGRNTNSWGKRSN 716


>gi|311255076|ref|XP_003126098.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Sus
           scrofa]
          Length = 801

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 247 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 306

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 307 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 365

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 366 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 425

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 426 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 485

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 486 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 545

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 546 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 605

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 606 VLEEANQAINPK 617


>gi|332529812|ref|ZP_08405766.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
 gi|332040833|gb|EGI77205.1| dead/deah box helicase domain protein [Hylemonella gracilis ATCC
           19624]
          Length = 565

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 192/375 (51%), Gaps = 4/375 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     I +A+ E+GY   T++QE  +   L+  D+L  AQTG+GKT AF L L   
Sbjct: 3   FEELKLAPAILKAVREQGYETPTAIQEQAIPLILQGNDLLGGAQTGTGKTAAFTLPLLHN 62

Query: 62  LLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L       +    +   AL + PTRELA QV   +        +   V  GGV ++ +  
Sbjct: 63  LTMRRSAQNKWGGNGIRALVLTPTRELAAQVEESVRNYGKYLQLESTVIFGGVGMNPQIA 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  D++ +L   PK 
Sbjct: 123 RVKKGVDILVATPGRLLDLQQQGFMDLSQVQMLVLDEADRMLDMGFIHDVKKVLALLPKD 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT S  I  LA+   K+   V +   N     I      V  S +   + +I+
Sbjct: 183 KQSLLFSATFSDEIRALAEGLLKNPQSVQVTPRNTTVQRITQSVHTVGRSKKKALLAHII 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +
Sbjct: 243 NAQDWSQVLVFTRTKFGANHVAEYLNKNGVTAMALHGNKSQGARTQALAGFKSGEIRALV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  V++ E+ + PE+ +HR GRTGRAGR+G +V ++  + Q     +
Sbjct: 303 ATDIAARGIDIDELPHVVNYEIPNIPEDYVHRIGRTGRAGREGQAVNLVCLDEQGFMAEI 362

Query: 360 FREANVSVVWEPAPS 374
            R     +     P+
Sbjct: 363 ERFTKQQIAVVETPA 377


>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 644

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 194/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 10  MTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM 69

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 70  ITMLARGRAR---ARMPRSLVLCPTRELAAQVAENFDIYAKHVKLTKALLIGGVSFKEQE 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ +K +V+DEAD MLD+GF  DIE I    P 
Sbjct: 127 QAIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADRMLDMGFIPDIERIFGLVPF 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +  +  ++ +  ++   + I+ R +      RD      
Sbjct: 187 TRQTLFFSATMAPEIERITNTFLSNPEKIEVERQSTTSATIEQRLIEFKAPRRDAQAKMK 246

Query: 239 LRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                          +NAI+FC+ +  V    K L +H      + G+L Q  R   L  
Sbjct: 247 RDMLRAAITAEGDAFRNAIIFCNRKVDVDIVAKSLKKHNLNAEPIHGDLDQSHRMRTLAG 306

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P++  VI+ ++ S+ E+ +HR GRTGRAG+ G+++ +  
Sbjct: 307 FRDGSITLLVASDVAARGLDIPNVSHVINYDVPSHAEDYVHRIGRTGRAGKTGVAITLCV 366

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
            + ++    +       +    AP
Sbjct: 367 PSDEKYLGAIEGLIKQPIPRAEAP 390


>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
           RA-YM]
 gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 371

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/367 (33%), Positives = 194/367 (52%), Gaps = 3/367 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +A+S+ GY   T++QE  +   L  +D++  AQTG+GKT AF + L   L   
Sbjct: 7   SLSSPILKAISDAGYTTPTAIQEKAIPTILEGRDLIGCAQTGTGKTAAFSIPLLQIL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++      +  AL + PTRELA+Q+   +E       +      GGV   ++ R L  G 
Sbjct: 64  SETPKKGKSVRALILTPTRELAIQIQENIEQYSKFLNIKHLSIFGGVPQGKQERALNQGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D ++   L++S ++ +VLDEAD MLD+GF +D++ IL   PKKR+ L F
Sbjct: 124 DILIATPGRLLDLMQQGLLSLSQIEILVLDEADRMLDMGFVNDVKKILTKVPKKRQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I   A+    +   V +   +     I+     V  +D+ N ++NIL+     
Sbjct: 184 SATMPNSIRQFAETILDNPAEVTVTPVSSTAKTIEQSVYFVEKNDKTNLLINILKDTSEL 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+    R  K L        A+ G  SQ  R  AL+  +D R  V IATD+AA
Sbjct: 244 RSLIFTRTKHGADRLVKQLGRTGIFAAAIHGNKSQNARQKALKDFKDNRISVLIATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  VI+ EL + PE  +HR GRTGRAG  G ++       ++  + + +    
Sbjct: 304 RGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLKNIQKLIGF 363

Query: 366 SVVWEPA 372
           ++   PA
Sbjct: 364 TMNTAPA 370


>gi|328772988|gb|EGF83025.1| hypothetical protein BATDEDRAFT_29115 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 483

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 10/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   + P  + + +   G+   TS+Q       L  +DV+  A+TGSGKT+A+ L  
Sbjct: 54  VETFAEASFPSYVLKEVESLGFSAPTSIQSQGWPMALSGRDVVGVAETGSGKTLAYTLPS 113

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELA+Q+  E     + + +      GGV    + 
Sbjct: 114 IVHINAQ-PLLKPGDGPIVLILAPTRELAIQIQVECNKFGSSSRIKNTCLYGGVPKGPQM 172

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 173 RDLERGIEICIATPGRLIDMLESGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++YQK+ ++VN+ S         + I           R   
Sbjct: 233 DRQTLMWSATWPKEVQALARDYQKEFIQVNVGSMELSASHNITQIVEICPSHDKRHRLYK 292

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +  +  +  I+F  T+ +    T+ L    F  +A+ G+  QQER   +Q  + G+
Sbjct: 293 LLEDIMSNADQKTIIFTGTKRTADDITRDLRHDGFPALAIHGDKKQQERDWVMQEFKSGK 352

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + IATDVAARG+D+ D++ VI+ +  +N E+ +HR GRTGRA  KG +  +   +   
Sbjct: 353 TPILIATDVAARGLDVKDVKFVINFDFPNNIEDYVHRIGRTGRANNKGTAYTLFSPDNFK 412

Query: 352 MQRRAERLFREANVSVVWE 370
             R   ++  EA   V  +
Sbjct: 413 SARDLVKILEEAGQVVDPQ 431


>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 455

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 212/468 (45%), Gaps = 48/468 (10%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +QE  +   L  +DVL  AQTG+GKT +F L +
Sbjct: 6   MTKFNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASFTLPM 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 66  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYAKHLKLTKALLIGGVSFKEQD 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 123 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---------LS 229
            R+ L FSAT++P I  +   +     RV +A +      I+   V+             
Sbjct: 183 TRQTLFFSATMAPEIERITDTFLSAPTRVEVARQATASETIEQGVVMFKGGRRDREASQK 242

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +    +         NAI+FC+ +  V    K L ++ +   A+ G+L Q +R   L  
Sbjct: 243 RKTLRALIDAEGDKCTNAIIFCNRKTDVDICAKSLKKYGYDAAAIHGDLDQSQRMKTLDG 302

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R+ +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ +  
Sbjct: 303 FRDGTLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICS 362

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++    +      S++ +  P ++                 + ++ DE K       
Sbjct: 363 GRDEKALTAIE-----SLIQKEIPRID-----------------NPVKADEPKPEAPKPE 400

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           K              R       E        GR R R D     V G
Sbjct: 401 KK------------ARESESRKSESRKDREPKGRGRGRRDDNGRPVVG 436


>gi|218903612|ref|YP_002451446.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|218537452|gb|ACK89850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
          Length = 450

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 516

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 208/467 (44%), Gaps = 13/467 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +       EA++  GY   T VQE  +   L  +D++ +A+TG+GKT AF L  
Sbjct: 11  MKQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPS 70

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L            PL L + PTRELA Q+G     + A T   +   +GG+S   + 
Sbjct: 71  LDRLGHAKG----GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQI 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  I++ TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P 
Sbjct: 127 NKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPA 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I         D   V IA +      ++   V VA + +   +  +
Sbjct: 187 SRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVAQTLKPALLKAV 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G+   IVF  TR+      + L    +   A+  + SQ +R  AL     G+  V 
Sbjct: 247 LAEKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+ +++ V++ +L + PE+ +HR GRTGRAG  G +V  +          
Sbjct: 307 VATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRD 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDPEK 415
           + +     +     PS +A +  +                I+   K+M      K    +
Sbjct: 367 IEKLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKARE 426

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A        A   AP+   P   V+ +    +  +  +        
Sbjct: 427 QAQA----EDAPKNAPKRKAPKKPVASKGAQPNRQQPGRANAKQGQP 469


>gi|251790108|ref|YP_003004829.1| DEAD/DEAH box helicase domain-containing protein [Dickeya zeae
           Ech1591]
 gi|247538729|gb|ACT07350.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 455

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 188/383 (49%), Gaps = 8/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+ E+GY   T VQ   +   L  +D++ SAQTG+GKT  F L L  
Sbjct: 2   SFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL + PTRELA Q+G  +        +   V  GGVS++ +   
Sbjct: 62  LLNERPVLAKGRRPVRALILTPTRELAAQIGENVLAYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D      +++S +  +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 122 LRGGVDILIATPGRLLDLEHQNAVDLSQVDILVLDEADRMLDMGFIHDIRRVLAKLPPKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +   N     +      V    +   + +++ 
Sbjct: 182 QNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG  RV +A
Sbjct: 242 KHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + 
Sbjct: 302 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       +EP P+++A
Sbjct: 362 RLLKREIPRIAIPGYEPDPTIKA 384


>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 493

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 142/480 (29%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +  AL+E GY   T +Q A +      +DV+ +AQTG+GKT  F L +  
Sbjct: 14  TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPIIH 73

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 74  NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 134 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V  + +  A+V+ 
Sbjct: 194 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHL 253

Query: 238 ---ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +  IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 254 LKQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373

Query: 355 RAERLFREANVSVVWEPA----PSVE-----------------AIR------ERDAQRIL 387
               + +    ++  E      P+ E                  +R      ER+  R+L
Sbjct: 374 LLADIEKLIKRNLPREQLADFDPTGEQARDRERRERDEKRARGEVRRARERDERNGARVL 433

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +   + +  +    +       P + A        AG     +    +L+ G  R R
Sbjct: 434 DHTIVRPAFRPSDDPFFNRPYESSVPAESAEAAKPAQPAGHPRSAKRPIAALLGGVPRKR 493


>gi|224824946|ref|ZP_03698052.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602617|gb|EEG08794.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 438

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 191/374 (51%), Gaps = 3/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   GY   T VQ A +   L   D+LVSAQTGSGKT AF L     L   +
Sbjct: 8   LAPAITSALDAAGYTTPTPVQAASIPAALAGHDLLVSAQTGSGKTAAFLLPSLQKLTERS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
                   P  L + PTRELA QV +      ++         +GG S   + R +    
Sbjct: 68  TG--SGQGPRILVLTPTRELAQQVEKNATEYGSQLRWLRTVCLVGGASFGYQIRAMARPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R   ++ S L+ ++LDEAD MLD+GF +DIE I+ ++P  R+ ++F
Sbjct: 126 DIMVATPGRLMDHMRSGRIDFSRLEMLILDEADRMLDMGFIEDIETIVKATPDSRQTVLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  LA+   +D  R+ IA E    +  ++         ++  + +IL+  G  
Sbjct: 186 SATLDGTVGKLAQKLTRDPQRIEIAREETGGNIEEHLLYADDNRHKERLLDHILKEAGFD 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+         L++  +    L G++ Q  R+  L  +R GR R+ +ATDVAA
Sbjct: 246 QAVIFTATKIGSEELADKLSDQGYAAACLHGDMPQNWRNRTLNDLRRGRVRILVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V++ +L    E+ +HR GRTGRAGR G+++ +       +  R+ +    
Sbjct: 306 RGIDVPTITHVVNYDLPKQAEDYVHRIGRTGRAGRDGVAITLAESKEFHKVRRIEQYLKR 365

Query: 366 SVVWEPAPSVEAIR 379
            +       +E  R
Sbjct: 366 QITEGVIEGMEPTR 379


>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 539

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 195/379 (51%), Gaps = 3/379 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L    
Sbjct: 55  LSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPMLEILSGSR 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  
Sbjct: 115 AR---ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEALNRGVD 171

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D     GL ++  K +V+DEAD MLD+GF  DIE I+      R+ L FS
Sbjct: 172 VLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPIRQTLFFS 231

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P I  LA  +  +   + ++  +   S I+   V+V   D+  A+  +LR    +N
Sbjct: 232 ATMAPEIRRLADMFLHNPKEITVSRPSSVASTIETGLVIVEEDDKRRALRKLLRESDMQN 291

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ +  V    K L +H F   AL G+L Q  R + L+  + G  ++ + +D+AAR
Sbjct: 292 AIIFCNRKRDVDVLCKSLLKHGFSAGALHGDLPQSLRFSTLEAFKSGELKILVCSDIAAR 351

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + +L  + E+ +HR GRTGRAGR G +  +     Q  AE + +     
Sbjct: 352 GIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPYEQPLAEAIEKLTGKP 411

Query: 367 VVWEPAPSVEAIRERDAQR 385
           +V      ++     D  R
Sbjct: 412 IVRLEVKGIDQTEWSDEPR 430


>gi|229156050|ref|ZP_04284149.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
 gi|228627371|gb|EEK84099.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 4342]
          Length = 454

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R LQ   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLQGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|150025749|ref|YP_001296575.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 414

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 203/383 (53%), Gaps = 5/383 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + I  A+ E GY++ T +QE  +   L  +D++  AQTG+GKT AF + +  
Sbjct: 2   LFEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPIIH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L               L + PTRELAVQ+G   +     T +      GGVS + +   
Sbjct: 62  NLHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVEQ 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++ TPGRL D  +   +N+ H+  +VLDEAD+MLD+GF +D++ I+  +PK R
Sbjct: 122 LKSGIDILIATPGRLLDLHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA+ +  D   V +A  +     +D R   V  +D+   + +I++
Sbjct: 182 QTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHIIK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N +VF  T+       K L +      A+ G+ SQ  R  AL   ++    + +A
Sbjct: 242 EEKLSNILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L + PE  +HR GRTGRAGR+GM++    ++ +   + + 
Sbjct: 302 TDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYWKDII 361

Query: 361 REAN---VSVVWEPAPSVEAIRE 380
           +       ++   P P  +  +E
Sbjct: 362 KLTKAKVTTIDEHPFPWKKGAQE 384


>gi|297565173|ref|YP_003684145.1| DEAD/DEAH box helicase domain-containing protein [Meiothermus
           silvanus DSM 9946]
 gi|296849622|gb|ADH62637.1| DEAD/DEAH box helicase domain protein [Meiothermus silvanus DSM
           9946]
          Length = 538

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 158/557 (28%), Positives = 253/557 (45%), Gaps = 44/557 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+V+  AL  +G+   T++Q   +   L  +DVL  A+TG+GKT+AF L +A 
Sbjct: 3   FKDFALRPEVLA-ALEAKGFTTPTAIQAQAIPLALEGRDVLGQARTGTGKTLAFALPIAH 61

Query: 61  TL------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L       +          P A  + PTRELA+QV  EL W+     V+     GG   
Sbjct: 62  KLEAPFRGDSRVASRQRGRPPRAFILTPTRELALQVAGELAWVAPHLHVLP--IYGGTGY 119

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ GA +VV TPGR  D++    L++SH++  VLDEADEML +GF +D+E +L 
Sbjct: 120 GSQAEGLRRGADVVVATPGRAIDYLNQGILDLSHVEIAVLDEADEMLSMGFEEDVEKLLG 179

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           ++P  R+  +FSAT+      LA+ Y +D V VN+  + +   +    A+   L  R N 
Sbjct: 180 ATPASRQTFLFSATVPSWAKRLAERYMRDPVHVNVVKDEQVSYEEL--ALQAPLQTRLNT 237

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +++  +  +  IVF  T+A V      L         + G++SQ+ER   L   R+G 
Sbjct: 238 LTDVIFAYAPERTIVFTRTKAEVDELATGLQARGIGAAPIHGDMSQRERERVLGRFREGT 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+P+++LV+H  L    E   HRSGRTGRAGR G  +       +R
Sbjct: 298 DTVLVATDVAARGLDIPEVDLVVHFRLPEKAEPYQHRSGRTGRAGRSGRVILFYGPRERR 357

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E L             P+ E ++E   QR+L           +     ++     +  
Sbjct: 358 ELENLEYAVKRRFKRVNPPTPEEVQEAKWQRLLAR--LAKQPPHERAPWRELADRLVNDR 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           +  AG L      + AP+ +                             +G     LS  
Sbjct: 416 EAIAGLLAFMLGTVSAPKSL-------------------------ITGEEGLVTVKLSG- 449

Query: 475 SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
             Q+     ++  + + +G  R  IG I +  D  +++V AD ++ +++ +      +  
Sbjct: 450 --QRLTIARVV-AVLKKAGAGR--IGRIVLSQDAAYIDVQADELESIQQNLSEFHLSRAH 504

Query: 535 YLGGEKPDFRGYKSSGF 551
            +  E P     +S G 
Sbjct: 505 EVPAESPSRERRESEGR 521


>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
 gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 506

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 208/467 (44%), Gaps = 13/467 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +       EA++  GY   T VQE  +   L  +D++ +A+TG+GKT AF L  
Sbjct: 1   MKQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L            PL L + PTRELA Q+G     + A T   +   +GG+S   + 
Sbjct: 61  LDRLGHAKG----GQGPLMLVVTPTRELAQQIGEVCTAIAASTHHRILTVVGGLSYTPQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  I++ TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P 
Sbjct: 117 NKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRMLDMGFWPAMKKIIGATPA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I         D   V IA +      ++   V VA + +   +  +
Sbjct: 177 SRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVAQTLKPALLKAV 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G+   IVF  TR+      + L    +   A+  + SQ +R  AL     G+  V 
Sbjct: 237 LAEKGSDRVIVFARTRSRADSTCRRLKRAGYTAEAIHSDRSQAQRRRALDNFAAGKTGVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+ +++ V++ +L + PE+ +HR GRTGRAG  G +V  +          
Sbjct: 297 VATDVLARGIDVEEVDYVVNYDLPTQPEDYVHRIGRTGRAGAAGFAVSFVSPETADALRD 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDPEK 415
           + +     +     PS +A +  +                I+   K+M      K    +
Sbjct: 357 IEKLIKRPIPEMEVPSFDAEQAAEEAAGKAARADARRDPEIKQAAKEMAARERKKAKARE 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A        A   AP+   P   V+ +    +  +  +        
Sbjct: 417 QAQA----EDAPKNAPKRKAPKKPVASKGAQPNRQQPGRANAKQGQP 459


>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
 gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 442

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/415 (27%), Positives = 194/415 (46%), Gaps = 14/415 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+             +      A   R+      +    A   +    + +
Sbjct: 181 RKQTLLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL 240

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 +   A+VF   R  V      L E       L GEL Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINTSYLEGELVQAKRNEAIKRVVDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  V + ++    +  LHR GRTGRAG+KG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDIDDVSHVFNFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL 360

Query: 357 ERLFREANVSVVWEPA--------PSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            ++ R     +             P  E ++ + ++++L   +   + Q  E+K 
Sbjct: 361 GKIIRYVKEPIKARVIDELRPTTRPPSEKLKGKPSKKVLAKRVETKNKQKAEEKP 415


>gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
          Length = 442

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|307294408|ref|ZP_07574252.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
 gi|306880559|gb|EFN11776.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
           L-1]
          Length = 454

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 137/474 (28%), Positives = 221/474 (46%), Gaps = 26/474 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A++E GY   T +Q   + P L  KD++  AQTG+GKT +F L +  
Sbjct: 2   TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + + 
Sbjct: 62  ILAHGRAR---ALMPRSLILEPTRELAAQVAENFEKYGKYHKLNMALLIGGVQMGDQLKA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D  +   + ++    +V+DEAD MLD+GF  DIE I    P +R
Sbjct: 119 LEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  LA  +  +   + +A      ++I  R V V    +  A+  +L 
Sbjct: 179 QTLLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNITQRLVKVDSRKKREALRAMLE 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A++FC+ + +V    K L  H F+   + G++ Q  R   L+  R G   + +A
Sbjct: 239 AEDVLSAVIFCNRKTTVRDLNKSLQRHGFKSGEIHGDIDQSARIAELERFRAGSVNILVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARG+D+  +  V + +   +P++ +HR GRTGRAG KG++   +  +     + + 
Sbjct: 299 SDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTADDAEAIDNIQ 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +     +    AP+  A  ER  +   +        +  EK+  +               
Sbjct: 359 KLIKQQIETIDAPAAAAPAERAVEEPRRADRDRRPDRKSEKRRDE--------------- 403

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
            R H     A  E T       R R R+      V  G  D + G     LSVG
Sbjct: 404 -RRHEEPRAARPENTRQENNGARPRRRET-----VDDGPDDGWNGPVPEFLSVG 451


>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
 gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
          Length = 441

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
          Length = 442

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/415 (27%), Positives = 195/415 (46%), Gaps = 14/415 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + ++L E+G+   T++Q   + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADQARELAKHTRLDIATITGGVAFMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+             +      A   R+      +    A   +    + +
Sbjct: 181 RKQTLLFSATLEGEAIKDFAERILNEPVEIEADPARRERKKIQQWYYRADDIKHKTALLL 240

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 +   A+VF   R  V      L E       L GEL Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEVTRAVVFVRKRERVHEVCGWLREAGINSSYLEGELVQAKRNEAIKRVVDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  VI+ ++    +  LHR GRTGRAG+KG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDIDDVSHVINFDMPVTSDTYLHRIGRTGRAGKKGIAISLVEAHDNLLL 360

Query: 357 ERLFREANVSVVWEPAPSV--------EAIRERDAQRILQDPLFLDSIQGDEKKM 403
            ++ R     +       +        E ++ + ++++L   +   + Q  E+K 
Sbjct: 361 GKIIRYVKEPIKARVIDQLRPTTRAPNEKLKGKPSKKVLAKRVEQKNKQKAEEKP 415


>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 630

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +       +V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQIQAIA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      ++++H++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAHLITLG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    RV +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANSVRVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIERV 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TRQRIP 373


>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 442

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 182/372 (48%), Gaps = 6/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+G+   T +Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIV 236
           +++ ++FSAT+             +      A  +R+      +    A     +   ++
Sbjct: 181 RKQTMLFSATLEGDNIRDFAERLLNDPVELEADPSRRERKKIQQWYYRADDLQHKTKLLI 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+       IVF   R  +      L E   +   L GE+ Q +R+ A++ + +GR  
Sbjct: 241 HLLKQPDVTRCIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLL 360

Query: 357 ERLFREANVSVV 368
            ++ R  N  + 
Sbjct: 361 GKITRYVNEPIK 372


>gi|298489929|ref|YP_003720106.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298231847|gb|ADI62983.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 513

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/497 (28%), Positives = 234/497 (47%), Gaps = 28/497 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   Q   E L +  +   T++Q   +   L  +DV+  +QTG+GKT AF L +  
Sbjct: 4   TFQELGISQERVEILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPMLE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L           A  A+ + PTRELA+QV   +       G+ V    GG S+ R+   
Sbjct: 64  KLDVSK------KAVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQ 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+VVGTPGR+ D +    L +  +K  VLDEADEML +GF DD+  IL  +P +R
Sbjct: 118 LKRGVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTER 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNIL 239
           +  +FSAT+ P+I  L   +    V V +       + I+  A L+     +  A+  IL
Sbjct: 178 QTALFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPIL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A++F  TR + +  T  L      V    G+LSQQ R   L   R+ + R  +
Sbjct: 238 EMEDPETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +  
Sbjct: 298 ATDIAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAF 357

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD--------------PLFLDSIQGDEKKMVD 405
            R    +      P+   I  R  +++ +               P+  + I+  + + + 
Sbjct: 358 ERHNRQNWQVLTIPTRAQIEARHIKKLQEQVAEALTGERLASFLPIISELIEKYDAQAIA 417

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
               +   ++    +L   ++G+  P+E    S     ++ RD     + GGG R+  + 
Sbjct: 418 AAALQIAYDQTRPDWL---QSGVDIPQE--EPSPKPKLNKHRDSGEYPRSGGGERERSRS 472

Query: 466 SSWFSLSVGSKQKAEAR 482
           S   S + G + +   +
Sbjct: 473 SWSKSDNGGDEGRGTPK 489


>gi|124007618|ref|ZP_01692322.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
 gi|123986916|gb|EAY26681.1| ATP-dependent RNA helicase [Microscilla marina ATCC 23134]
          Length = 441

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/410 (27%), Positives = 195/410 (47%), Gaps = 23/410 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+  + + I +A+++ GY N T +QE  +   L   DV+  AQTG+GKT AF L +
Sbjct: 3   MATFEDFKLNKQILQAITDSGYENPTPIQEKAIPLVLAGHDVMGVAQTGTGKTAAFVLPI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +++    P AL +APTRELA+Q+ + +E     T +      GG+    + 
Sbjct: 63  LMRI-----KYAQGMHPRALILAPTRELAIQIEKAVETYSQHTDIRFTCVYGGLGPKTQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +Q G  IV+ TPGRL D    + L +  +  +V+DEAD+M+D+GF   I  IL+  P 
Sbjct: 118 ETIQAGVDIVIATPGRLLDLYSREELVLKDINTLVMDEADKMMDMGFMPQINRILEIIPV 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   +  L++++ +    V +  +      ++              ++  
Sbjct: 178 KRQNLLFSATMPEKVQKLSEDFLEFPEFVEVTPQATTAETVEQVLFETPNIKTKINLLYH 237

Query: 239 L--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
                   K  ++F  TR +     K LA    +        ++ + +    +   + G 
Sbjct: 238 FLADEETFKRVMIFTRTRKNADSVYKFLARKFSEDQVRVIHANKGQNTRINSMNAFKSGD 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ + TDV ARGID+  +  VI+ ++    E+ +HR GRTGRA + G ++  I +    
Sbjct: 298 IRILVGTDVVARGIDVTLVSHVINFDIPLIYEDYVHRIGRTGRAMQSGKAISFITEADVY 357

Query: 355 RAERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDPLF 392
             +++ +   + V  EP P+   I            RE D Q+  +DP +
Sbjct: 358 HMKKIEQIIRLQVPVEPIPAAVEIPKTPFDEAQVIAREIDRQKRKEDPDY 407


>gi|88798356|ref|ZP_01113941.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
 gi|88778796|gb|EAR09986.1| ATP-dependent RNA helicase, DEAD box family protein [Reinekea sp.
           MED297]
          Length = 433

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 2/377 (0%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  +   I +A++E+GY   T +Q   +   L  +D+L +AQTG+GKT  F L + 
Sbjct: 1   MQFSELALADPILKAVTEQGYTTPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ EN R   A+    L + PTRELA QV   +      T V   V  GGV ++ + +
Sbjct: 61  QHLITEN-RPVKANRCRVLVLTPTRELAAQVEDNVTAYAKYTDVRSEVVFGGVKINPQMQ 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D      ++   L+ +VLDEAD MLD+GF  DI  I+   P +
Sbjct: 120 KLRRGVDILVATPGRLLDLHSQNAIDFRDLEVLVLDEADRMLDMGFIHDIRRIMRLLPTQ 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  I  LAK   ++ V V++  +N     +  + + V  + +   ++++L
Sbjct: 180 RQNLMFSATFSDEIRALAKTIVENPVEVSVTPKNTTAERVRQQVIPVDKAKKTALLIDLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    RV +
Sbjct: 240 KKETWHQVLVFSRTKHGANRIAEKLNKAKIPAAAIHGNKSQGARTRALSEFKSNDIRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG  G ++    ++       +
Sbjct: 300 ATDIAARGIDIDQLPHVINFDLPNVAEDYVHRIGRTGRAGSDGDAISFASRDEADLLAAV 359

Query: 360 FREANVSVVWEPAPSVE 376
                  +     P  +
Sbjct: 360 QNFIGQVIERVDYPGFK 376


>gi|224095173|ref|XP_002195734.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Taeniopygia
           guttata]
          Length = 842

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 190/372 (51%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 284 SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 343

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 344 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 402

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 403 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 462

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 463 SATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 522

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 523 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 582

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 583 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 642

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 643 VLEEANQAINPK 654


>gi|226942043|ref|YP_002797117.1| RhlE3 [Laribacter hongkongensis HLHK9]
 gi|226716970|gb|ACO76108.1| RhlE3 [Laribacter hongkongensis HLHK9]
          Length = 582

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 3/468 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A++E GY   T +Q   + P L  +D++ +AQTG+GKT  F L L  
Sbjct: 5   SFADLQLVDPLLRAITEAGYTEPTPIQREAIAPVLAGRDLMAAAQTGTGKTAGFALPLLQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A +    PA  P  L + PTRELA QVG  +  L     +   V  GGV V  +   
Sbjct: 65  RLAATHPHPHPAGRPRGLVLTPTRELAAQVGESIATLGTHLPLTSLVIFGGVRVKPQIEA 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I++ TPGRL D  + + +++S ++ +VLDEAD MLD+GF  D+  +L   P +R
Sbjct: 125 LTQRVDILIATPGRLIDLAKQEAVDLSGVEILVLDEADRMLDMGFIRDVRKVLKLLPAER 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT +  I  LA  +  D   V ++  N     + +   LV  + +   + +++ 
Sbjct: 185 QNLLFSATFNDDIKALADTFLHDPQLVEVSPPNSTTELVTHHVHLVDRNRKRELLTHLVE 244

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +R  +VLA+      A+ G  SQ  R+ AL   +DG  RV +A
Sbjct: 245 SRQWQQVLVFTRTKHGANRLAEVLAKGGIPAAAIHGNKSQGARTRALSEFKDGSLRVLVA 304

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +    + 
Sbjct: 305 TDIAARGIDISELPQVVNYELPNVPEDYVHRIGRTGRAGSPGEAVSLVCVDELKLLADIE 364

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                 +     P  EA      Q +L  P      Q  E         K  P    A  
Sbjct: 365 AFIGRPIPQFTEPGFEADLSVPPQPLL-PPRHQQGRQDGEGGEPRGQRNKKKPHNKPARR 423

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  + APE  +         +     +            +G++ 
Sbjct: 424 ADAPTLPMDAPEHDSGAPAPVAEAQPPRQRKPAPGQPNPAGKPQGAAR 471


>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 433

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 195/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +AEN   +  S    L + PTRELA QV   +E         V    GGV V  + + L
Sbjct: 63  -MAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA         ++   +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQKIRRITVPGYE-VGSRDL 382


>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 638

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 203/481 (42%), Gaps = 17/481 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   +  A+ E GY   + +Q A + P L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MTFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L A   R     A  AL + PTRELA+Q+G   +       +   V  GGV    +  
Sbjct: 61  DRLTANAPR--RKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++  PGRL D I    +++S+L+  VLDEAD MLD+GF  D++ ++   P +
Sbjct: 119 ALKKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGE 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVN 237
           R+ LMFSAT+   I  LA    +    V +   +     I      V   ++      + 
Sbjct: 179 RQNLMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHVEKGNKKFLLPWLI 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                   NA+VF  T+    +  K L +      A+ G  SQ  R  AL+  + G+ +V
Sbjct: 239 KNLQPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V       Q    
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLA 358

Query: 358 RLFR--EANVSVVW------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            + +     + VV        PAP       R  +         +     + K       
Sbjct: 359 GIEKLNRGKIPVVSGHPWDGVPAPVRPEPPVRGKKPKAAAAEPAEKPAAKQPKPAKAEAK 418

Query: 410 KHDPEKIAAGF----LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              PEK AA       +  +     P          GR   R  +   +         +G
Sbjct: 419 NAKPEKKAAPAPKVQAKPAKTEKEEPFMDDTKRTTGGRSNDRRSNNNSRPRREQNAPARG 478

Query: 466 S 466
           S
Sbjct: 479 S 479


>gi|149187764|ref|ZP_01866061.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838644|gb|EDL55584.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 196/386 (50%), Gaps = 7/386 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I + L+   Y + T +Q   +   L  KD+L  AQTG+GKT AFGL L   +  E 
Sbjct: 21  FSSTIHQNLAALNYESPTPIQARAIPYVLDGKDILAGAQTGTGKTAAFGLPLIHKIAQEP 80

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S +    +L + PTRELA QV   L  L   TG+ V V  GG S+  + ++L  GA
Sbjct: 81  KVRESNSKVIRSLVLTPTRELAQQVFDSLVPLAKDTGLKVVVAYGGTSMGVQTKNLVGGA 140

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH   + + +S  + ++LDEAD MLD+GF  D+  IL   PK+R+ +MF
Sbjct: 141 DILVATPGRLLDHQHNRNITLSECEYLILDEADRMLDMGFMPDLNRILKRLPKERQNMMF 200

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I TLA     + + V +   N     +      V    +   +  ++     +
Sbjct: 201 SATFEQRIKTLAHRIMNEPIEVQVTPANSTADTVKQMVYPVDKKRKHELLAYLIGSRNWQ 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L       V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 261 QVLVFTKTKQGSDALAKELKLDGINAVSINGDKSQGARQKALDDFKSGKVRALIATDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ EL    E+ +HR GRTGRAG  G +V ++  + Q   E + R  + 
Sbjct: 321 RGLDIQQLEQVVNFELPYKAEDYIHRIGRTGRAGHAGFAVSLMSHDEQYLLEAIERLLDT 380

Query: 366 SVV------WEPAPSVEAIRERDAQR 385
            +       +EP+P+ E   +R  +R
Sbjct: 381 RLPQEWLAGFEPSPASEVEPDRAPRR 406


>gi|67539522|ref|XP_663535.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|74657087|sp|Q5B0J9|DBP2_EMENI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|40738604|gb|EAA57794.1| hypothetical protein AN5931.2 [Aspergillus nidulans FGSC A4]
 gi|259479898|tpe|CBF70542.1| TPA: ATP-dependent RNA helicase dbp2 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B0J9] [Aspergillus
           nidulans FGSC A4]
          Length = 563

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L  
Sbjct: 139 VETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 198

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 199 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 257

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 258 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 317

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  + ++VNI S     N + + I          DR   
Sbjct: 318 DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK 377

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     +VF  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 378 HLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 437

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 438 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAK 497

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 498 QARDLVTILSEAKQQI 513


>gi|332521345|ref|ZP_08397801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043073|gb|EGI79271.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 444

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 196/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+S++GY N + +Q   + P L   DVL SAQTG+GKT  F L L   +L+EN
Sbjct: 8   LSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLL-HILSEN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA QV   ++       +   V  GGV+   +  +++ G  
Sbjct: 67  PK-EKFRPIRALVLTPTRELAAQVYANVKEYSEFLNLRSVVIFGGVNQKPQVANIRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++  ++  VLDEAD MLD+GF  DIE ++   P KR+ LMFS
Sbjct: 126 VLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA N  K+ V+V    EN     I  +   VA   +   ++ ++     K 
Sbjct: 186 ATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLVIKLISDGNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ TK +        A+ G  SQ  R+ AL+  +DG  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANKLTKKMISSGITAAAIHGNKSQGARTKALKGFKDGTIRVMVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  VI+ E+ +  E+ +HR GRTGRAG KG ++ ++  +  +    + +     
Sbjct: 306 GLDIPLLPHVINFEIPNISEDYVHRIGRTGRAGAKGEAISLVSADETQYLRDIEKLIGEK 365

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 366 LKVEILEGFE 375


>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 624

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 221/464 (47%), Gaps = 14/464 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I EAL E  Y   T +Q+  +   ++ KD+L  A+TG+GKT AF L +   L + 
Sbjct: 7   DLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEKL-SS 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L + PTRELA QV + ++    K         GGVS + + + L++G 
Sbjct: 66  KERNKKRPQTRVLVLVPTRELANQVTQNIKSYAKKLPFKTLPVFGGVSSYPQIQALKSGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D      L++ H+  +V DEAD M D+GF  DI+ I+   P+KR+ L+F
Sbjct: 126 DIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMFDMGFIHDIKQIVKMLPEKRQNLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    + +L  +  KD +R+ I  +N    +I  R +LV    +   +  +       
Sbjct: 186 SATYPSEVMSLCNSMLKDPLRIQIEEQNSTALNIIQRVILVDRDKKMELLNEVFGVESID 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+ S  + +  L    F V AL G+ SQ  RS  L+  ++G+ ++ +ATD+AA
Sbjct: 246 QALVFTRTKRSADKCSSYLHTLGFSVAALHGDKSQSVRSKTLEKFKNGKTKILVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++  +  +    + +  + 
Sbjct: 306 RGLDIKELPFVINLELPNVPEDYVHRIGRTGRAGNDGVAISLVCVDEFKFLIDIEKLIDK 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            ++ E     EA       R+   P+          +  D    K D ++         +
Sbjct: 366 KLIRESFSGFEADL-----RVKPQPIRRGQNMNKSSERDDRNGNKIDKKE--------RK 412

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
                 ++         RD F+ + R        R      S F
Sbjct: 413 PREFNSDKKDESKRGRNRDDFKGEFRDRPKKDDKRKFDDKRSKF 456


>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 419

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 127/381 (33%), Positives = 193/381 (50%), Gaps = 6/381 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-ENDRF 69
           +   L   G+   T VQ   +   L  KDVL  AQTG+GKT AFGL +   L+  +  R 
Sbjct: 14  LLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPILQKLIDSDTKRD 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
             ++   AL + PTRELA QV   L    A+T + V    GG S++ + R+L  G  I++
Sbjct: 74  IQSNDVRALVLVPTRELAQQVFDNLTQYAAQTKIKVVAVYGGTSMNVQTRNLDQGCDILI 133

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+  K +N+   + +VLDEAD MLD+GF  DI+ IL      R+ L FSAT 
Sbjct: 134 ATPGRLIDHMYCKNINLHKTEYLVLDEADRMLDMGFMPDIKRILQRCNDDRQTLFFSATF 193

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I T+A    ++ V V ++  N     +      V    +   +  ++     +  +V
Sbjct: 194 DKRIKTIAYRMLEEPVEVQVSPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQQVLV 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARG+D
Sbjct: 254 FTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAARGLD 313

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  LE V++ ++    E+ +HR GRTGRAG++G +V ++ ++ +     + R  +  +  
Sbjct: 314 IQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLHAIERLLDTKLPQ 373

Query: 370 EPA----PS-VEAIRERDAQR 385
           E      PS +E I    A R
Sbjct: 374 EWLQGFEPSLIEEIEPDKAPR 394


>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 442

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 6/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+G+   T +Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILIVTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIV 236
           +++ ++FSAT+             +      A  +R+      +    A     +   ++
Sbjct: 181 RKQTMLFSATLEGDNIRDFAERLLNEPVELEADPSRRERKKIQQWYYRADDLQHKTKLLI 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+      +IVF   R  +      L E   +   L GE+ Q +R+ A++ + +GR  
Sbjct: 241 HLLQQPDVTRSIVFVRKRERLHELVSWLHEAGIRSSYLEGEMVQAKRNEAIKRLSEGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++  +     
Sbjct: 301 VLVATDIAARGIDVEDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDFVLL 360

Query: 357 ERLFREANVSVV 368
            ++ R  N  + 
Sbjct: 361 GKITRYVNEPIK 372


>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
          Length = 703

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 161 NLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 220

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 221 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAP 277

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 278 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 337

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 338 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 397

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 398 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 457

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 458 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 517

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK++       +     A   
Sbjct: 518 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINT----AKRL 573

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 574 LEKGKEASNHEPERSWFQTKEERKKEK 600


>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
 gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
          Length = 414

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 4/375 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +AL+E GY + T +Q+  +   L   D+L  AQTG+GKT AF L +   L  ++  
Sbjct: 10  DHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQRL-HQSRM 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA+Q+G         TG++  V  GGV+ + +   L  G  I+
Sbjct: 69  HGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTARLVRGVDIL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    L++  ++  VLDEAD MLD+GF  DI  +L   PKKR+ L FSAT
Sbjct: 129 VATPGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKRQSLFFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P I  L+     +   V +   +     I+ + + V   ++++ + ++L+    ++A+
Sbjct: 189 MPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLLKERNIESAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  + LA H     A+ G  SQ  R  AL   +  + RV +ATD+AARGI
Sbjct: 249 VFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLVATDIAARGI 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANV 365
           D+ +LE VI+ +L + PE  +HR GRTGRAG +G +        +   R  E+L      
Sbjct: 309 DIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLRDIEKLIARKIP 368

Query: 366 SVVWEPAPSVEAIRE 380
            +   P P V  I E
Sbjct: 369 VIEDHPFPMVNTIPE 383


>gi|52143016|ref|YP_083814.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
 gi|51976485|gb|AAU18035.1| ATP-dependent RNA helicase [Bacillus cereus E33L]
          Length = 450

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 438

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 128/395 (32%), Positives = 195/395 (49%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++ +GY   T +Q   +   L  +DVL +AQTG+GKT AF L +   L    
Sbjct: 8   LSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLHLLSQST 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     AP AL + PTRELA QVG  +        +      GGV +  +   L+ G  
Sbjct: 68  QR---QRAPRALVLTPTRELAAQVGESVSTYGQHLPLRALQIFGGVGMVPQTTALRRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 125 ILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRMLDMGFIHDIRRVLKLLPSKRQNLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     D +R+ +A  N     +      VA   + + + +++     + 
Sbjct: 185 ATYSREIEQLAIGLLHDPLRIEVAPRNTAAETVTQVVHPVAREAKRSLLSHLILQGDWQQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L        A+ G  SQ  R+ AL   + G  R  +ATD+AAR
Sbjct: 245 VLIFTRTKHGANRLAEQLGRDGITAAAIHGNKSQGARTRALADFKSGALRALVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V +I  + +     + R     
Sbjct: 305 GLDIDRLPHVVNFELPNVPEDYVHRIGRTGRAGSDGTAVSLISPDERGLLAGIERLLGRR 364

Query: 367 VV------WEPAPSVEAIRERDAQRILQDPLFLDS 395
           +       +E   S +   + DA+R  Q P    +
Sbjct: 365 IDVQRIDGFEERGSTDETLQADARRQSQAPRKHHA 399


>gi|49477717|ref|YP_036595.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118477863|ref|YP_895014.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196033783|ref|ZP_03101194.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196043209|ref|ZP_03110447.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225864437|ref|YP_002749815.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228927528|ref|ZP_04090581.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946079|ref|ZP_04108415.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122021|ref|ZP_04251237.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|49329273|gb|AAT59919.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118417088|gb|ABK85507.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|195993463|gb|EDX57420.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196025518|gb|EDX64187.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|225786741|gb|ACO26958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|228661364|gb|EEL16988.1| ATP-dependent RNA helicase [Bacillus cereus 95/8201]
 gi|228813592|gb|EEM59877.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228832136|gb|EEM77720.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 450

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|317492534|ref|ZP_07950962.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919526|gb|EFV40857.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 465

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ E+GY   T +Q   +   L+ +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LSAELLRAVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQILSQDT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  QPAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLEHQHAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     +      V    +   +  ++  H  + 
Sbjct: 188 ATFSDEIKELANKLLTNPASVEVARRNTASEQVAQSVHFVDKRRKRELLSQLIGTHNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGSIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAECTGEALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIAIEGYEPDPSIKA 384


>gi|168704554|ref|ZP_02736831.1| ATP-dependent RNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 523

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++   + + +A++  GY N T +QE ++ P LR KDV+  AQTG+GKT AF +   +
Sbjct: 87  LFADLKLMRPLMDAITAAGYKNPTPIQENVIPPALRGKDVIGQAQTGTGKTAAFLIPFLN 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                  R      P+ + + PTRELA+Q+  E E L            GG  + R+   
Sbjct: 147 RW-----RPHTLKGPIGVVMTPTRELALQIANEAEKLAPSKRFRCVPVYGGTGMQRQLDG 201

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGR+ DH++   +++S ++  VLDEAD MLD+GFRDDIE IL   P +R
Sbjct: 202 LTRGCDLVVGTPGRMLDHLQRGSMSLSQVRYAVLDEADRMLDIGFRDDIERILKRCPSER 261

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+ SAT+  +I  L   Y +D V +++  E      I      V    +   +  ++ 
Sbjct: 262 QTLLMSATVPDSIKRLVNRYMRDPVHLHMMPEKPTVDKIRQSYFTVDQDRKFELLKRVVE 321

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F   +       + L   + +   + G+L Q +R   +   R    +  IA
Sbjct: 322 REKPRQCLIFVERKRWADNLYRDLKRAVPKAAVIHGDLPQSQREKIMAAFRTADIKYLIA 381

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV +RGID+  L  VI+ +L  + EN +HR GRTGR G+ G+++  +          + 
Sbjct: 382 TDVMSRGIDVSGLSHVINYDLPMDIENYVHRIGRTGRIGKDGIAISFVLPEQGEHLTNIE 441

Query: 361 REANVSVVWEPAPSVE 376
              N  +  +     E
Sbjct: 442 MMINRLIEEDRVEGFE 457


>gi|78777961|ref|YP_394276.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498501|gb|ABB45041.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 540

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 138/467 (29%), Positives = 232/467 (49%), Gaps = 13/467 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + I  ++ + G+   + +Q A +   L  +D++  A TG+GKT AFGL   +
Sbjct: 15  TFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHTGTGKTAAFGLPALN 74

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +P      L I PTRELA QV  EL       G       GG S +R+   
Sbjct: 75  NI-------NPNDGVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSSYNRQIDL 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +Q GA +VV TPGRL D ++   L       VVLDEADEMLD+GF DDI  I    P  R
Sbjct: 128 IQRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+    +   ++I      ++DI+    ++  S+RD+AI+ ++ 
Sbjct: 188 QTLLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMD 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + +IVFC T++ V R + VL+   +    L G++ Q++R   ++  ++   +V +A
Sbjct: 248 AEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNNGVKVLVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  V +  +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+ 
Sbjct: 308 TDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIK 367

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +   ++     PS   +R  + + I    +   +I  +  +++D+L    D   I    
Sbjct: 368 TKVGTTMTHAFVPSKNDLRAINLKSIAT-SIEEHNIYDEAHQILDMLKEDIDEPTIMFKL 426

Query: 421 LRI--HRAGLCAPEEI-TPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           + +   R  +  P  I  P   ++      D  R  K G G+    +
Sbjct: 427 VSMILDRQAIQGPNSIGIPAEKLAAILERADKRRDSKGGRGNFRGNR 473


>gi|301053986|ref|YP_003792197.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|300376155|gb|ADK05059.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 454

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 499

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 145/486 (29%), Positives = 227/486 (46%), Gaps = 34/486 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + +  A+ + GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L +APTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  ISMLKRGRAR---ARMPRSLVLAPTRELAAQVAENFDVYAKNTKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  +V +A        I    V+   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPAKVEVARAATTSDTITQSVVMFKGSRKDRESSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +        +N I+FC+ +  V    K + ++      + G+L Q +R   L  
Sbjct: 238 RQLLRTMIENEGDKCRNGIIFCNRKVDVDIVAKSMKKYGLDASPIHGDLDQSKRMETLAA 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAG+ G ++ +  
Sbjct: 298 FRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKLGTAMMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++    + R     +V    P  E    RD     QD    ++ + D+ K       
Sbjct: 358 PRDEKNLGDIER-----LVKMEIPRGEG--SRDTTAPTQDAAP-EAPKEDKPKRTRTRSR 409

Query: 410 KHDP--EKIAAGFLRIHRAGLCAPEEITP--------VSLVSGRDRFRDDSRAFKVGGGS 459
           K D   E+I A  +    A +  P+E  P            +         R  +VG G 
Sbjct: 410 KKDAPKEEIVADAVDA--APVEEPKEDAPKQKQAEPVEKQAAEAPEKPKQERGNRVGRGK 467

Query: 460 RDNFKG 465
           RDN + 
Sbjct: 468 RDNNRD 473


>gi|302879666|ref|YP_003848230.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582455|gb|ADL56466.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 504

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 192/369 (52%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+++ GY   T VQ   +   L   D+L  AQTG+GKT  F L +   L + 
Sbjct: 16  NLAEPIMRAIADAGYTQPTPVQAQAIPLVLAGGDLLAGAQTGTGKTAGFTLPVLHLLNSR 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 A  P  L + PTRELA QV   ++       +   V  GGV+++ + + L+   
Sbjct: 76  PAANPGAGRPRCLILTPTRELAAQVEESVQTYGKYLSLKSLVMFGGVNINPQIKSLRGQV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+  K L++S ++ ++LDEAD MLD+GF  DI+ IL   PK R+ L+F
Sbjct: 136 DILVATPGRLLDHVGQKTLDLSAVEILILDEADRMLDMGFIRDIKKILALLPKTRQNLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I TL+     +   V +A  N     +     +VA   + + + ++++++  K
Sbjct: 196 SATFSEEIKTLSDGLLNNPGFVEVARRNTTSELVAQTVHMVAQKLKSHLLSHLIKHNDWK 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L        A+ G  SQ  R+ AL   +DG   V +ATD+AA
Sbjct: 256 QVLVFTRTKHGANRLAEKLNADGIPAAAIHGNKSQSARTKALSQFKDGTMPVLVATDIAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++     +  + + R    
Sbjct: 316 RGLDIDMLPHVVNFELPNVPEDYVHRIGRTGRAGSNGAAISLVDSEELQHLKDIERLIKT 375

Query: 366 SVVWEPAPS 374
            +      S
Sbjct: 376 QIPRIAIDS 384


>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
 gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
          Length = 454

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
 gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
           bacterium ALC-1]
          Length = 436

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 188/370 (50%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+S++GY   + +Q   + P L EKDVL SAQTG+GKT  F L L   L    
Sbjct: 8   LSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLHLL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   ++       +   V  GGV+   +   ++ G  
Sbjct: 66  RPVQKHRPIRALILTPTRELAAQVHTNVKEYSEFLNIKSTVIFGGVNQKPQVATIRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L++  ++  VLDEAD MLD+GF  DIE ++   P KR+ LMFS
Sbjct: 126 VLVATPGRLIDLESQGLLSLKRVEIFVLDEADRMLDMGFLRDIERVMKLMPDKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +   + V+V    EN     ID +   VA   +   I+ ++     K 
Sbjct: 186 ATFSKDIKKLAYSILNNPVKVEATPENTAVEVIDQKVYRVAKGKKTGLIIKLISEGNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K +        A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANKLCKKMISAGITAAAIHGNKSQGARTKALAGFKSGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  V++ E+ +  E+ +HR GRTGRAG  G ++ ++  +       + +  ++ 
Sbjct: 306 GLDIPLLPHVVNYEIPNISEDYVHRIGRTGRAGASGEAISLVSADETTYLRSIEKLIDMK 365

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 366 IEVEVVEGFE 375


>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 431

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/384 (30%), Positives = 202/384 (52%), Gaps = 2/384 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +Q   +   +  KDV+ +AQTG+GKT  F L +   L+   
Sbjct: 8   LSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILELLI--P 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+    L + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  
Sbjct: 66  GKLAQANQARVLILTPTRELAAQVGESVATYGKNLPLRSAVVFGGVKINPQMMKLRQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +   HL+ +VLDEAD MLD+GF  DI+ IL   PKKR+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     + +    V  + +   ++++++ +    
Sbjct: 186 ATFSNDIRGLAKGLVNNPVEISVSPANTTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L        A+ G  SQ  R+ AL   + G+ +V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +  ++   + R     
Sbjct: 306 GLDIEQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSDIERLIGEL 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDP 390
           +  +     + + E    R+ + P
Sbjct: 366 LQRQSVDGFKPVNELPESRLNRRP 389


>gi|42781571|ref|NP_978818.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737494|gb|AAS41426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 447

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 203/385 (52%), Gaps = 11/385 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E       S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++
Sbjct: 61  LEKIDPE------CSDVQALIVAPTRELALQITNEIKKMLVQRDDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P
Sbjct: 115 LRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++ ++FSAT+   I  LAK Y  +   + I SE    + I+ R +      + +A+  
Sbjct: 175 GSKQTMLFSATMPKDIKKLAKRYMDEPQMIQIQSEEVTVNTIEQRVIETTDRAKPDALRF 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E
Sbjct: 295 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLE 354

Query: 358 RLFREANVSVVWE--PAPSVEAIRE 380
            + +     +  E    P ++ + E
Sbjct: 355 EIEKTLGAPLQREIIEQPKIKHVDE 379


>gi|170725457|ref|YP_001759483.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169810804|gb|ACA85388.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 200/382 (52%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYQKMTPVQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           ++ +      ++   AL + PTRELA Q+   +        V V    GGV +  + + +
Sbjct: 63  MIDKPSETQRSN-TRALILTPTRELASQIADNINDYSKHMQVSVLTIYGGVKLETQAQKI 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL +HI+   LN+S++  +VLDEAD MLD+GF  DI+ +L +  K  +
Sbjct: 122 KRGVDIIVATPGRLLEHIQACNLNLSNVDFMVLDEADRMLDMGFVSDIQKVLQAVNKNSQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT S ++  LA ++      +++  +N     +      V    +   +  ++  
Sbjct: 182 KMLFSATFSSSVKKLANDFLDKPKLISVDKQNTTADTVSQVVYPVEQRRKRELVSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  ++F +TR +  +  K L         + GE +Q  R  AL+  ++G+ RV +AT
Sbjct: 242 KNWKQVLIFTATRDAADKLVKELNLDGIPSSVVHGEKAQGNRRRALREFKEGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R    + +
Sbjct: 302 EVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +        E +  RD 
Sbjct: 362 LIGKKLPRITIAGYE-VGSRDL 382


>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 433

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 193/387 (49%), Gaps = 3/387 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + E    +  S    L + PTRELA QV   +          V    GGV +  + + L
Sbjct: 63  -MVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL +H+    +++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++  +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE  Q  R  AL+    G  RV +AT
Sbjct: 242 KNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ 388
                +     P  E        + LQ
Sbjct: 362 LIGQKIRRVTVPGYEVGSRELLLKQLQ 388


>gi|291614807|ref|YP_003524964.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584919|gb|ADE12577.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 466

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 20/401 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + I  A+SERGY   T +Q   +   L+  D++  AQTG+GKT  F L L   L+   
Sbjct: 8   LSEEIARAVSERGYTEPTPIQAQAIPVILKGGDLMGGAQTGTGKTAGFTLPLLQRLMEKP 67

Query: 65  -----------------ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
                            E ++ S   AP+ AL + PTRELA QV   +        +   
Sbjct: 68  ISGQPSPQSSPASGRGGEREKHSSIRAPIRALVLTPTRELAAQVEESVRLYGKYLPLKSM 127

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           +  GGV+++ + + L     I+V TPGRL DH++ K +++SH++ +VLDEAD MLD+GF 
Sbjct: 128 MMFGGVNINPQIKQLHGRVDILVATPGRLLDHLQQKTVDLSHVEILVLDEADRMLDMGFI 187

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            DI+ +L   PK+R+ L+FSAT S  I  LA     +   + +A  N+ +  I+ R   V
Sbjct: 188 RDIKRVLAVLPKQRQNLLFSATFSDEIKLLADGLLNNPALIEVARRNQANELIEQRVYPV 247

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               + N + ++++ H     +VF  T+   +     L +     +A+ G  SQ  R+ A
Sbjct: 248 DRERKRNLLTHLIKDHNWFQVLVFTRTKHGANNLADHLNKEGIPAMAIHGNKSQAARTRA 307

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   +  + +V +ATD+AARGID+ +L  V++ EL + PE+ +HR GRTGRAG +G +  
Sbjct: 308 LAEFKTAKLQVLVATDIAARGIDISELPHVVNYELPNVPEDYVHRIGRTGRAGSEGEASS 367

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           ++  + ++    + R     +     P  E      A+ IL
Sbjct: 368 LVCIDEKKLLHDIERLIKREIPVVQVPGFEPDPRIKAEPIL 408


>gi|329767883|ref|ZP_08259397.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
 gi|328838671|gb|EGF88270.1| hypothetical protein HMPREF0428_01094 [Gemella haemolysans M341]
          Length = 486

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 237/485 (48%), Gaps = 14/485 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +   Q   ++L    +++ T +Q   +   L   D+L  AQTGSGKT AFG+ L
Sbjct: 1   MTTFEELGVSQETVQSLRNMNFISPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D    +    +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  V-------DTVRKSDQLQSLILAPTRELAQQVGEQLRLMSRAKGLKVSIVFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  + + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRRTIKLDSLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K++ KD   +   S+     DI   A +   +++   ++  
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLIKTISDEDLKPDITEYATIARENEKLETLIGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G+++  +        + 
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDVESYTHRIGRTGRAGKSGVAITFLNPVEMPYLKD 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +       +      S + +++    R+  + +  +D+   +   + + LLA+ + EK+ 
Sbjct: 354 IENSRGERMKMLRPYSQDEVKKARHNRLFDEVVSEMDNNHVEFNSLANKLLAETNAEKVI 413

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              L    + L   ++   V L   +   R   R  +   G+    +  +    +   ++
Sbjct: 414 TILL----SKLINDKKDVDVELSFEKPLPRKQERGRRSNRGNDRRRRSDNRDKKNRNERR 469

Query: 478 KAEAR 482
             + +
Sbjct: 470 GTDKK 474


>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 429

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 172/386 (44%), Gaps = 19/386 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  +   + + +   GY   T +Q   + P L+ +D++  AQTG+GKT AF L +  
Sbjct: 2   TFENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL       P      L ++PTRELA Q+   ++ L   TG+      GGV +  ++  
Sbjct: 62  RLLR-----GPRGKLRGLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+  PGRL DH+    ++   ++ +V+DEAD M D+GF  DI  IL    +  
Sbjct: 117 LRAGTDIVIACPGRLLDHVWQGTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPE 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +  +   PA                          + +    V    +   +  ILR
Sbjct: 177 RQTLLFSATMPADVRKLVQEFLTDPVTVQIGTVAPAVTVTHALYPVRQDLKTALLKQILR 236

Query: 241 YHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF  T+    R    L +  + V ++ G LSQ  R  AL   +DG  +V +
Sbjct: 237 QIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+ D+  VI+ ++    +  +HR GRTGR GR G +   +    +     L
Sbjct: 297 ATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRAL 356

Query: 360 FREANVSVV-----------WEPAPS 374
            +    ++             EP PS
Sbjct: 357 EKLLKTTIERRTVEGFDYNAPEPPPS 382


>gi|229100254|ref|ZP_04231145.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
 gi|229115941|ref|ZP_04245337.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228667530|gb|EEL22976.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-3]
 gi|228683149|gb|EEL37136.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-29]
          Length = 450

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|56460652|ref|YP_155933.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179662|gb|AAV82384.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 416

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 190/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q+  +   +   D+L +AQTG+GKT  F L L   L    
Sbjct: 15  LSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLAAAQTGTGKTAGFTLPLLHKLSQTK 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL + PTRELA QV   L      TG+   V  GGV ++ +   L+ G  
Sbjct: 75  TDGKPVIK--ALILTPTRELAAQVEDNLNTYAKYTGLKSLVIFGGVGINPQISALRRGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH R   +++S +  ++LDEAD MLD+GF  DI+ ++   P+KR+ L+FS
Sbjct: 133 ILVATPGRLLDHSRQGTVDLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTLLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  L++ + +    + +A +N     I+ R   V    +   +  ++     + 
Sbjct: 193 ATFSSEIKALSQQFMQQPKLIEVARQNAAADTIEQRVYPVDKKRKRELLSYLIGSRNWRQ 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +     +A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 253 VLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGKLRVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  VI+ EL    E+ +HR GRTGRAG +G +  ++  +  +    + +     
Sbjct: 313 GIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEAASLVCVDEHKLLRDIEKLTKNE 372

Query: 367 VVWEPAPSVE 376
           +  E  P  E
Sbjct: 373 IPREVIPGFE 382


>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 481

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 187/372 (50%), Gaps = 3/372 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + I  AL E  Y+  T +Q   +   +  +DV+  AQTG+GKT +F L +
Sbjct: 7   LTSFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P +    L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 67  IHRLLENRIKPQPKT-CRVLVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  ++V TPGRL D ++   L ++ ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 126 RSIMPGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPI 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA    +D  RV +         I  R + V  S +   +  I
Sbjct: 186 KRQTLFFSATMPKDIADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAKPTLLAQI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A++F  T+    +  K LA       A+ G  SQ  R   L   R G  R  
Sbjct: 246 LKQENVNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAGEIRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G+++ ++          
Sbjct: 306 VATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLVAGEEMAFLRD 365

Query: 359 LFREANVSVVWE 370
           + +   +++  E
Sbjct: 366 IEKLIRITLPRE 377


>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
          Length = 442

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
 gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
          Length = 458

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|294673582|ref|YP_003574198.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
 gi|294472821|gb|ADE82210.1| ATP-dependent helicase, DEAD/DEAH box family [Prevotella ruminicola
           23]
          Length = 446

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/393 (30%), Positives = 193/393 (49%), Gaps = 13/393 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I +AL +  + ++T +QE  +   L   DVL  AQTG+GKT A+ L +
Sbjct: 1   MK-FEETYLNDNILDALYDMHFEDMTPIQEQCIPEILDGYDVLGVAQTGTGKTAAYLLPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L    D   P  A  A+ ++PTRELA Q+ + ++        V +V + G +     
Sbjct: 60  LSELD---DGDYPKDAINAVIMSPTRELAQQIDQAMQGFGYYLDDVSSVAVYGGNDGNRY 116

Query: 119 ----RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
               R ++ GA +++ TPGRL  H++   L++S     VLDEAD MLD+GF +DI  I+ 
Sbjct: 117 DQELRSMRMGADVLIATPGRLLSHLKVGNLDLSRCSFFVLDEADRMLDMGFIEDIMKIVK 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P   + +MFSAT+   I  LA     + V +   + ++    I   A +     +   
Sbjct: 177 ELPASCQRIMFSATMPKKIRELAVQLLHNPVEI-QIAVSKPAEKIHQMAYVCYEPQKLKI 235

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I +I +    +  I+F   +  V   T+ L         +  +LSQ ER  A+   + G+
Sbjct: 236 IQDIFKKGDLQRVIIFSGKKERVKEVTRKLKSMHINCDQMHSDLSQAERDEAMYRFKAGQ 295

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+ ARGID+ D+ LVI+ ++ S+ E+ +HR GRT RA R G ++  +  +   
Sbjct: 296 TDVLVATDIVARGIDIDDIRLVINYDVPSDSEDYVHRIGRTARADRDGEAITFVSDDDMY 355

Query: 355 RAERLFREANVSVVWEPAPS--VEAIRERDAQR 385
           R + +       V   P P    EA   +  ++
Sbjct: 356 RFQSIEHFLGKEVEKLPLPEGLGEAPEYKKREK 388


>gi|206974096|ref|ZP_03235014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959967|ref|YP_002338523.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|229139159|ref|ZP_04267734.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
 gi|206748252|gb|EDZ59641.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065592|gb|ACJ79842.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|228644218|gb|EEL00475.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST26]
          Length = 454

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|296394094|ref|YP_003658978.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181241|gb|ADG98147.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 548

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 132/480 (27%), Positives = 228/480 (47%), Gaps = 11/480 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + +A+ E GY   + +Q   +   L  +DV+  A TG+GKT AF L + 
Sbjct: 9   TTFADLELHPSVLKAVQEVGYETPSPIQAKTIPALLNGQDVVGLAATGTGKTAAFALPVL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER- 118
           S +  +  R      P AL +APTRELA+QV        +K   V  VC+ G   +  + 
Sbjct: 69  SRIDPKLRR------PQALVLAPTRELALQVAEAFGRYASKLPQVSVVCVYGGGSYPVQL 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G+ ++VGTPGR+ DH+    L +  LK +VLDEADEML +GF++D+E +L S+ +
Sbjct: 123 QALARGSQVIVGTPGRVVDHLERGTLKLGDLKFLVLDEADEMLKMGFQEDVERVLASASQ 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +++ +FSAT+  AI  ++K Y +D V V + +      +I+ R  LVA   + + +  I
Sbjct: 183 DKQVALFSATMPGAIRKISKTYLRDPVEVTVKAATTTSENIEQRYTLVAHHRKLDLLTRI 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        IVF  T+ +     + L    F    L+G+++Q  R   +  +R G+  + 
Sbjct: 243 LEVEQFSAMIVFVRTKQATEDIAERLRARGFAARPLNGDIAQAARERTVSALRAGKIDIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAGR G+S   +    +     
Sbjct: 303 VATDVAARGLDVERITHVFNYDVPHDTESYVHRIGRTGRAGRAGVSYLFVTPRERSMIGA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE--KKMVDVLLAKHDPEKI 416
           + R    ++   P P+V  +      +         ++ G E  +++V+    ++D    
Sbjct: 363 IERATRQALTEAPLPTVADVNAGRIAKFRDSITEALALPGVEQFRRLVEDYERENDVPMA 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                   +        ++     S + +     R  +       + +GS     S G  
Sbjct: 423 DIAAALAAQTRSGEEFLLSDDPDESQQRKGPKQDRGGQRWNHRDGDDRGSREGRGSQGRD 482


>gi|239637375|ref|ZP_04678357.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
 gi|239596975|gb|EEQ79490.1| cold-shock DEAD box protein A [Staphylococcus warneri L37603]
          Length = 509

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 233/473 (49%), Gaps = 18/473 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ E           +L +APTRELA+QV  +L+       V V    GG+ + R+ 
Sbjct: 61  IEKVVGEQ-------GVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI TL + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  D+    ++   ++L   +D E
Sbjct: 354 QIEDANNRRMTALRPPHRKEVLKAREDDIKEKVQNWMSKDNEPRLQRISTELLEEYNDVE 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-----DSRAFKVGGGSRDN 462
            +A+    +  A      ++T    +S + R             K GGG  DN
Sbjct: 414 LVASLLQELVEANDEVEVQLTFEKPLSRKGRNSKGNNNSRRGNNKRGGGKFDN 466


>gi|169335734|ref|ZP_02862927.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258472|gb|EDS72438.1| hypothetical protein ANASTE_02154 [Anaerofustis stercorihominis DSM
           17244]
          Length = 510

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 130/461 (28%), Positives = 223/461 (48%), Gaps = 7/461 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L E G+ N T +Q   +       DV+  +QTG+GKT+AF +     +  E ++ +
Sbjct: 15  INRVLDEMGFTNPTDIQNKAIPAIRSGVDVIGKSQTGTGKTIAFAIPAIEKIDIEQEKPT 74

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L I PTRELA Q   E++ L      +  V I G      +      AHIV+G
Sbjct: 75  A----QVLIICPTRELAQQGYAEIKKLTKYMPEIKVVDIYGGVSMERQISKLKKAHIVIG 130

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ DH++ + L + ++K VVLDEADEML +GF++DI+ IL ++P  R+ ++FSAT+ 
Sbjct: 131 TPGRIKDHLKRRTLKLQNIKMVVLDEADEMLSMGFKEDIDTILKTAPDTRQTVLFSATMP 190

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PAI  +   + K+ + + I  E    + I    + V    +   +  +L Y+G+K  I+F
Sbjct: 191 PAIMNIIDTFLKNPLLIQIDKEQVTVNKIAQNYIDVPKGKKKEVLNLLLHYYGSKLTIIF 250

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C+T+  V   TK L ++ F    L G++ Q ERS  +   ++ +  + +ATDVAARGID+
Sbjct: 251 CNTKRMVDDLTKFLRKNGFSAECLHGDIRQNERSRVMSNFKNAKTPILVATDVAARGIDV 310

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ-RRAERLFREANVSVVW 369
            D+E VI+ ++  N E  +HR GRT R G+ G S+ +     Q    + + +E N  +  
Sbjct: 311 KDVEYVINYDIPQNSEYYIHRIGRTARGGKTGTSITMTNNRKQVTDLKMILKETNSKIKK 370

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRAG 427
              P+   I  ++++  +   +     + +    +   L    +   +IA   L ++   
Sbjct: 371 LDIPTKNDINSKNSKDNMSVIISALKRENNSHDEMISDLKDLGYSENQIAKAALNLYFGE 430

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                       ++   +  +D          + ++   S 
Sbjct: 431 TKENIVKIEDISINKETKRYNDGNKNNARRKKQKSYGNKSL 471


>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 492

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +PA    AL + PTRELA Q+G  +E       +  AV  GGV +  +   L  G  
Sbjct: 66  GTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    +   ++ +++ +  + 
Sbjct: 186 ATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIELIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    +      +
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLIKQN 365

Query: 367 VVWEPAPSVE 376
           +   P    E
Sbjct: 366 LERRPVEGFE 375


>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 423

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 196/372 (52%), Gaps = 1/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E+GY   + +Q   +   +  KDV+ +AQTG+GKT AF L +   LL+++
Sbjct: 8   LSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPILE-LLSQS 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+    L + PTRELA Q+G  +        +  AV  GGV+++ + + L+ G  
Sbjct: 67  KRRVQANQARVLILTPTRELAAQIGESVTTYGKGLSLTSAVIFGGVNINPQMKRLRGGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+ +VLDEAD MLD+GF +DI  +L   PK+R+ LMFS
Sbjct: 127 ILVATPGRLLDLHRQNAIKFNRLEILVLDEADRMLDMGFINDIRKVLAFLPKERQNLMFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S +I  LA+    + V +++   N     ID     V    +   ++ ++R +    
Sbjct: 187 ATFSSSINNLARGMFNNPVEISVTPPNSTVEIIDQCIYPVDKKQKPALLIQLIRDNKWGQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G  SQ  R+ AL   ++G  ++ +ATD+AAR
Sbjct: 247 TLVFSKTKHGANRLVGQLQKKGINAAAIHGNKSQSARTKALAEFKNGTVQILVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 307 GLDIDLLPHVVNFDLPHVQEDYIHRIGRTGRAGASGEAISLVCADEFALLADIERLIKKI 366

Query: 367 VVWEPAPSVEAI 378
           +  +     E +
Sbjct: 367 LPRKSVEGFEPV 378


>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
 gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
          Length = 527

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 231/485 (47%), Gaps = 23/485 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A++E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +     R+ +A +      I+   VL   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREASEK 237

Query: 239 LRYHGA---------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                A          N I+FC+ ++ V    K L ++ F    + G+L Q +R+  L  
Sbjct: 238 RTALRALINAEGEKLTNGIIFCNRKSDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+ R+ +A+DVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ +  
Sbjct: 298 FREGKLRILVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGREGKAITICS 357

Query: 350 QNMQRRA---ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF----LDSIQGDEKK 402
              ++     E L ++  ++ +  P    E  +   A++            ++  G +  
Sbjct: 358 GRDEKALAAVESLLQK-EINRLENPVKKAEPAKRSSAKKPSDQDAKPTTGSETGSGRKST 416

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                    + E +  G      +     +   P S     D+ + + R+ + G GS + 
Sbjct: 417 RSKTSTKAVEAETVVTGTETAEVSTPEEQQAEKPKSAARKSDKSKSEGRS-RSGKGSSNR 475

Query: 463 FKGSS 467
            +  +
Sbjct: 476 SEDEA 480


>gi|195492387|ref|XP_002093968.1| GE20460 [Drosophila yakuba]
 gi|194180069|gb|EDW93680.1| GE20460 [Drosophila yakuba]
          Length = 818

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 191/376 (50%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 158 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVH 217

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 218 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 276

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 277 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 336

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   +    + V V        +   ++ 
Sbjct: 337 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 396

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 397 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 456

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 457 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 516

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 517 DLIQVLREANQTINPK 532


>gi|194865632|ref|XP_001971526.1| GG15018 [Drosophila erecta]
 gi|190653309|gb|EDV50552.1| GG15018 [Drosophila erecta]
          Length = 824

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 191/376 (50%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVH 218

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 219 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 277

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 278 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 337

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   +    + V V        +   ++ 
Sbjct: 338 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 397

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 398 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 457

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 518 DLIQVLREANQTINPK 533


>gi|301757526|ref|XP_002914626.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX17-like [Ailuropoda melanoleuca]
          Length = 775

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 221 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 280

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 281 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 339

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 340 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 399

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 400 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 459

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 460 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 519

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 520 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 579

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 580 VLEEANQAINPK 591


>gi|226313946|ref|YP_002773842.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096896|dbj|BAH45338.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 493

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 132/496 (26%), Positives = 233/496 (46%), Gaps = 25/496 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      + + + +  Y   T +QE  +   +  KD++  AQTG+GKT AF L + 
Sbjct: 3   KSFASFGFRPELMQGIQDLYYKEPTQIQEEAIPLIMEGKDLIGQAQTGTGKTAAFMLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L              AL + PTREL++Q+ +E+E L     V V    GG  + ++  
Sbjct: 63  NALDEGKRDI------QALILTPTRELSIQIAKEVEKLGKHLNVNVLSLHGGTDIDKQLS 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    IVVGTPGR+ DH++   L+   +  +VLDEAD+M+++GF +D+E ++  +P +
Sbjct: 117 KLKETVQIVVGTPGRVLDHMKRGSLHFGRISTLVLDEADKMMEMGFLEDVEQVIVHTPSQ 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L+FSAT+   +  LA  + K    + I  + +    I+    +V  SD+ +A+V++L
Sbjct: 177 RQVLLFSATMPDLVKKLAHRFMKQPPHIKIEGKQKTVERIEQFYYVVNQSDKTDALVDVL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF +T+  V + T  L E+     AL G+LSQ +R   ++  R+ R +  I
Sbjct: 237 EQEQPFLTIVFANTQVRVQQLTARLQENGLSAKALYGDLSQNKREQLMKQFREIRFQFLI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  +  VI+ +L ++ ++ +HR GRTGRAG+KG ++ +I    +    R 
Sbjct: 297 ATDIAARGLDVEGVTHVINYDLPNDVDSYIHRVGRTGRAGQKGKAISLISPRQKNLMARF 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDP----- 413
            +    S+          +     QR  +       ++  + K+       +  P     
Sbjct: 357 AKATKASIEERILQEGRHLDAGRRQRAEEREAHFIELRAQQAKEQQKEKDKEFSPVREAI 416

Query: 414 -----------EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                      +K+A     +        ++   ++        +         GG+  +
Sbjct: 417 KKKTKVKPGYKKKMARELGDLQTQYEKNRKKAEAIAARKAGKSAKPADAKKAGKGGAARS 476

Query: 463 FKGSSWFSLSVGSKQK 478
            KG   FS S G  + 
Sbjct: 477 AKGGRPFSQSQGKSRG 492


>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Ailuropoda melanoleuca]
          Length = 764

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 192 NLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 251

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV    + L     +   + +GG+ V  +   L+   
Sbjct: 252 PRQ---APVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAAP 308

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 309 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 368

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 369 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 428

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 429 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 488

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 489 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 548

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK++       +     A   
Sbjct: 549 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKELQQSEAQINT----AKRL 604

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +       E +       R + +
Sbjct: 605 LEKGKEASNHEPERSWFQTKEERKKEK 631


>gi|218897409|ref|YP_002445820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228901054|ref|ZP_04065263.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
 gi|228965436|ref|ZP_04126523.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|218541264|gb|ACK93658.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228794267|gb|EEM41784.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228858570|gb|EEN03021.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 4222]
          Length = 450

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKINPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 460

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|15678231|ref|NP_275346.1| EIF-4a family ATP-dependent RNA helicase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621248|gb|AAB84709.1| ATP-dependent RNA helicase, eIF-4A family [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 425

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 141/434 (32%), Positives = 217/434 (50%), Gaps = 17/434 (3%)

Query: 1   MKIFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK  E    +I   I  AL + G+ + T +Q   L   L   DV+  AQTG+GKT AF +
Sbjct: 1   MKGLEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L AE         P AL I PTREL +QV  E++ +     V V    GG S+  
Sbjct: 61  PVLENLEAE-------RVPQALIICPTRELCLQVSEEIKRIGKYMKVKVLAVYGGQSIGN 113

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G H++V TPGRL DHI    +++  +  VVLDEADEML++GF DDIE IL   
Sbjct: 114 QIAQLRRGVHVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHV 173

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ ++FSAT+S  I  +A+ Y ++   + +  ++    D           D+   + 
Sbjct: 174 PERRQTMLFSATVSKPILRIARKYMRNPQVMRVEKKHSPKIDEF--YFKTREEDKVELLD 231

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL  +  +  ++FC+T+  V R  + L    +    + G+LSQ +R   ++  R G   
Sbjct: 232 WILSSNNIRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFS 291

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGI +PD+E V++ +L    E  +HR GRTGRAG  G S  ++  +   R 
Sbjct: 292 LLVATDVAARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRL 351

Query: 357 ERLFREANVSVVWEPAPSVEAIR---ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            R+       +     PS E IR   E D + IL+  L   +   D + +  +    +  
Sbjct: 352 RRIQSFTGKRIKQSNMPSPEEIRRGYEMDLREILRRNLESKTY-SDSEILESLAGEGYSF 410

Query: 414 EKIAAGFLRIHRAG 427
             I+   L +  + 
Sbjct: 411 RDISHALLDVLESS 424


>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 402

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 207/390 (53%), Gaps = 8/390 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + I +AL    +   T +Q   + P L  +D+L  AQTG+GKT AF L L  
Sbjct: 5   TFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ + +R   A +  AL +APTRELAVQ+   L  L  +  +   + +GGV    + + 
Sbjct: 65  HLMQKRERP-RAFSTRALILAPTRELAVQIDDNLRMLGGELPIRRVLILGGVGRKPQVQR 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +Q GA IV+GTPGR+CD +    L +  +   VLDEAD MLDLGF  DI  +L S P+KR
Sbjct: 124 MQRGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRMLDLGFMRDIRKVLASLPEKR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+   ++  RV IA E      I      +  + +   +  +L 
Sbjct: 184 QSLLFSATMPGEIGRLAEGLLRNPARVRIAVEEPTPDRIAQHVHFIESTGKRVLLTRLLA 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  IVF  T+   +R  + L E      A+ G  SQ  R  AL+  R G ARV +A
Sbjct: 244 DRALEKVIVFTRTKHGANRVAEHLEESGIPADAIHGNKSQNARQRALERFRSGEARVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ EL + PE+ +HR GRT RAG++G+++     + +   + + 
Sbjct: 304 TDIAARGIDVAGVSHVVNFELPNEPESYVHRIGRTARAGQRGIAISFCDGSERPFLKAIE 363

Query: 361 REANVSV-----VWEPAPSVEAIRERDAQR 385
           +   V +     V    P+ E  ++  A+R
Sbjct: 364 KLTRVKMSVAGGVESDLPAEEPRKQPQARR 393


>gi|195126028|ref|XP_002007476.1| GI12369 [Drosophila mojavensis]
 gi|193919085|gb|EDW17952.1| GI12369 [Drosophila mojavensis]
          Length = 794

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 194/376 (51%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L     
Sbjct: 145 FEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVH 204

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 205 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDL 263

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 264 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 323

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRD---NAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   + +I     +   S++      ++ 
Sbjct: 324 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLLT 383

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 384 QISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 443

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 444 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 503

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 504 DLIQVLREANQTINPK 519


>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
          Length = 509

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 212/469 (45%), Gaps = 21/469 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++   +    A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L +
Sbjct: 1   MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            STL           AP  L ++PTRELA Q+ +    +  KTG  V    GG     + 
Sbjct: 61  LSTL---PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +++ G  +++ TPGRL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P 
Sbjct: 118 NEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I     +   D   V IA        ++   + +A   +   +  +
Sbjct: 178 DRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQAL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G+   IVF  T+       + L +  ++  ++  + SQ +R  AL   R GR  + 
Sbjct: 238 LEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+PD++ VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R    
Sbjct: 298 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    +V      + E            D   L+  +    K       K       A
Sbjct: 358 IEKLIGKNVPLMELETYEL-----------DMTVLEKGKKGAPKKGGYKGNKGSGRPAGA 406

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 R+     E+         R   R D+R  +            +
Sbjct: 407 -----KRSDKRGGEKRDFERRSDSRAEGRSDNRPGRGKRAEGKRSFDGA 450


>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
           bacterium]
          Length = 434

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   + +QE  +   L  KD++ +AQTG+GKT  F L +   L    
Sbjct: 8   LSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQLL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + ++    L + PTRELA QV   +        +   V  GGV ++ + + L+ G  
Sbjct: 66  GKPTNSNQVRTLILTPTRELAAQVQDSVATYGKHLPLKSTVVFGGVKINPQMKKLRGGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +V DEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYSQNAVKFDQLEIIVFDEADRMLDMGFIHDIKRILKVLPPKRQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK+   + V V+    N     +      V  S +   +  +++ H    
Sbjct: 186 ATFSDEIRKLAKSLVHNPVEVSTTPRNTTVKSVKQWIHPVDKSKKQALLTKLIKDHSWYQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G  SQ  R+ AL   +DG+  V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADFKDGKVNVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ +L  V++ +L   PE+ +HR GRTGRAG KG ++ ++  +  ++   + R
Sbjct: 306 GIDIIELPHVVNFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFDIER 360


>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 508

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 212/469 (45%), Gaps = 21/469 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++   +    A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L +
Sbjct: 1   MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            STL           AP  L ++PTRELA Q+ +    +  KTG  V    GG     + 
Sbjct: 61  LSTL---PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +++ G  +++ TPGRL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P 
Sbjct: 118 NEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I     +   D   V IA        ++   + +A   +   +  +
Sbjct: 178 DRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQAL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G+   IVF  T+       + L +  ++  ++  + SQ +R  AL   R GR  + 
Sbjct: 238 LEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+PD++ VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R    
Sbjct: 298 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    +V      + E            D   L+  +    K       K       A
Sbjct: 358 IEKLIGKNVPLMELETYEL-----------DMTVLEKGKKGAPKKGGYKGNKGSGRPAGA 406

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 R+     E+         R   R D+R  +            +
Sbjct: 407 -----KRSDKRGGEKRDFERRSDSRAEGRSDNRPGRGKRAEGKRSFDGA 450


>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 462

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|323946983|gb|EGB42999.1| DbpA RNA binding domain-containing protein [Escherichia coli H120]
          Length = 369

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 27/299 (9%)

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           +   AL+G+++Q  R   L+ ++DGR  + IATDVAARG+D+  + LV++ ++  + E+ 
Sbjct: 10  YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESY 69

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI-- 386
           +HR GRTGRAGR G ++  +    +R    + R   +++     P+ E + +R  ++   
Sbjct: 70  VHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAA 129

Query: 387 -LQDPLFLDSIQGDE----KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
            +Q  L    +        K        + D E +AA  L++ +        + P + + 
Sbjct: 130 KVQQQLESSDLDQYRALLSKIQPTAEGEEQDLETLAAALLKMAQGERTL--IVPPDAPMR 187

Query: 442 GRDRFRD--------------DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            +  FRD                         R +      + + VG     E R ++  
Sbjct: 188 PKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGA 247

Query: 488 LCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +     I+ + IG I++    + +E+      + +    RT  L+K + ++ LG  +P 
Sbjct: 248 IANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH 306


>gi|307202910|gb|EFN82130.1| Probable ATP-dependent RNA helicase DDX46 [Harpegnathos saltator]
          Length = 1034

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 123/475 (25%), Positives = 223/475 (46%), Gaps = 11/475 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 384 LEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLAD 442

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 443 GDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 502

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 503 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 562

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL ++  K +A
Sbjct: 563 FPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSA 622

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 623 IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARG 682

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ 
Sbjct: 683 LDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAG 742

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P        +A +  D +++     F       ++    +   K   +K A G  
Sbjct: 743 VLVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESEAALANEKKKFQKAALGLQ 802

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +    +    S+++ +   R+ +R              S+   L +  +
Sbjct: 803 DSDDEDIENDIDQQIESMLAPKRTVREIARPSATNITVPGQPIPSATDKLELARR 857


>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 455

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 200/371 (53%), Gaps = 4/371 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   + +A++E GY   T +Q   +   +  +DV+ +AQTG+GKT AF L +  
Sbjct: 13  TFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPILH 72

Query: 61  TLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   N   SPA  P+ AL + PTRELA QV   +      T +   V  GGV +  +R
Sbjct: 73  RLMQFANTSASPARHPVRALILTPTRELADQVADSVTTYAKFTPLRSTVVFGGVDIGPQR 132

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH+  K +N+S +  +VLDEAD MLD+GF  D++ I+   P 
Sbjct: 133 DALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLDRIVRLLPA 192

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT S  I  L ++Y  +   + +A+ N     +   A  +A SD+  A+V++
Sbjct: 193 KRQGLLFSATFSNEIRKLGRSYLSNPAEIEVAARNATADTVTQIAYPLAGSDKRAAVVHL 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++  G    IVF +T+   SR  + L     +  ++ G+ SQ +R  AL   + G   V 
Sbjct: 253 VKSRGFNQVIVFSNTKIGTSRLARELVRDGVKAESIHGDKSQLDRMKALDAFKAGELEVL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++       +R    
Sbjct: 313 VATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGNTGEAIAFFTPEEERYLLD 372

Query: 359 LFREANVSVVW 369
           + +     +  
Sbjct: 373 IEKLIKAKIPR 383


>gi|30262474|ref|NP_844851.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527766|ref|YP_019115.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185310|ref|YP_028562.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|167632590|ref|ZP_02390917.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170687052|ref|ZP_02878271.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227814717|ref|YP_002814726.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|30257105|gb|AAP26337.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502914|gb|AAT31590.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179237|gb|AAT54613.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|167532888|gb|EDR95524.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170669103|gb|EDT19847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|227002434|gb|ACP12177.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|330684829|gb|EGG96522.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU121]
          Length = 509

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 233/473 (49%), Gaps = 18/473 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALEGHDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ E           +L +APTRELA+QV  +L+       V V    GG+ + R+ 
Sbjct: 61  IEKVVGEQ-------GVQSLILAPTRELAMQVAEQLKVFSKGQNVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI TL + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQTLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  D+    ++   ++L   +D E
Sbjct: 354 QIEDANNRRMTALRPPHRKEVLKAREDDIKEKVQNWMSKDNEPRLQRISTELLEEYNDVE 413

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD-----DSRAFKVGGGSRDN 462
            +A+    +  A      ++T    +S + R             K GGG  DN
Sbjct: 414 LVASLLQELVEANDEVKVQLTFEKPLSRKGRNSKGNNNSRRGNNKRGGGKFDN 466


>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 461

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|166713488|ref|ZP_02244695.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 460

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 460

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
 gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
          Length = 459

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 204/397 (51%), Gaps = 7/397 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + +  AL  +GY   T +Q   +   L  +D+L  AQTG+GKT AF L   
Sbjct: 1   MSFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+  N R  P    + L +APTRELA Q+    +     + + VA   GG S+++ R+
Sbjct: 61  QRLVEANKRVLPTHCRM-LVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQ 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL  G  I+V TPGRL D +    LN+S ++ +VLDEAD+MLDLGF   +  I+   P+K
Sbjct: 120 DLSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRK 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+  AI  LA  +  +   V++   +     ++     V   ++   +  +L
Sbjct: 180 RQTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF  T+    R  K+LA +     A+ G  SQ +R  AL   R G+ RV +
Sbjct: 240 ADPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+P +  V + EL +  E  +HR GRT RAGR G+++    ++ +   + +
Sbjct: 300 ATDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYLKDI 359

Query: 360 FREANVSVVWEPAPS-----VEAIRERDAQRILQDPL 391
            +     +   P P+      E I+ +  + I  DP 
Sbjct: 360 EKLTRQKITVVPLPADFVKRAETIKSQRVKAIGADPA 396


>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
 gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
          Length = 441

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 193/392 (49%), Gaps = 10/392 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  ++   + +AL ++GY   T++Q+  + P +  +DVL SA TG+GKT AF L  
Sbjct: 4   LTTFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPA 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+     
Sbjct: 64  LQHLLDHPRR--KPGPPRILILTPTRELAMQVAEQAEELTQFTSLKIATITGGVAYQNHG 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  
Sbjct: 122 EVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRW 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIV 236
           ++   +FSAT+   +         +      A  +R+      +       L  +   + 
Sbjct: 182 RKYTWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHADNLEHKTKLLA 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + +IVF   R SV   ++ L +   +   L GE++Q +R+ A+  ++DG   
Sbjct: 242 RLISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVN 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG +V ++  +  +  
Sbjct: 302 VLVATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLL 361

Query: 357 ERLFRE----ANVSVVWEPAPSVEAIRERDAQ 384
            ++ R         ++   AP  +A ++ +  
Sbjct: 362 GKIKRYTEEPLKPRIIEGLAPRTKAPKDGEVN 393


>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 469

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 187/366 (51%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++ +GY   + +Q   +   L  +DVL  AQTG+GKT AF L L   L    
Sbjct: 8   LRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQRLSESE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL +APTRELA QV + +        +  A   GGV+++ +   L+ G  
Sbjct: 68  FKNKR---PRALILAPTRELAAQVHQSILDYGKGVDLHSACFFGGVNINPQISKLRRGLD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  + +  N+  ++ +VLDEAD MLD+GF  DI  IL   P  R+ L FS
Sbjct: 125 IIVATPGRLLDLCQRREANLGAIETLVLDEADRMLDMGFIHDIRKILKLLPHDRQNLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  +  LA +  ++ V V +A  N     I   A  +   ++  A+ N+++    K 
Sbjct: 185 ATYAKDVKKLADSILRNPVEVEVAPRNSTADQIAQEAYSIGQKNKREALSNLIKDGDWKQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  ALQ  +    RV +ATD+AAR
Sbjct: 245 VLVFTRTKHGANRLAKQLDSDGITAAAIHGNKSQSARERALQDFKTNYIRVLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL  V++ EL + PE+ +HR GRTGRAG+KG ++ ++    +     + +     
Sbjct: 305 GIDIIDLPHVVNFELPNIPEDYVHRIGRTGRAGKKGKAISLVCSEEEAYLVDIEKVLKRE 364

Query: 367 VVWEPA 372
           V     
Sbjct: 365 VPLFEL 370


>gi|70733086|ref|YP_262859.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347385|gb|AAY94991.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 622

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 190/366 (51%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPNG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +  +      P  L + PTRELA QV    +        V A   GGV ++ + + + 
Sbjct: 68  HPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAMA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 RGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA     +  R+ +   N     I+ R   +  S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHLITAG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H    VA+ G  SQ  R+ AL   + G  R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERM 367

Query: 363 ANVSVV 368
               + 
Sbjct: 368 TKQKIA 373


>gi|84502634|ref|ZP_01000753.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
 gi|84389029|gb|EAQ01827.1| ATP-dependent RNA helicase RhlE [Oceanicola batsensis HTCC2597]
          Length = 471

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 138/475 (29%), Positives = 221/475 (46%), Gaps = 27/475 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+++ GY + T +Q+  + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLDPKVLQAIADAGYESPTPIQQGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L   +   + A  P +L +APTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLL---SKGRARARMPRSLVLAPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 ALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     RV +A +      I+   V+   S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSGPARVEVARQATASETIEQGVVMFKGSRRDREGSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +        +NAI+FC+ +  V    K L ++ F    + G+L Q +R+  L+ 
Sbjct: 238 RQVLRDLIDREGEDCRNAIIFCNRKTDVDVTAKSLKKYGFDAAPIHGDLEQSQRTKTLEG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRDGSLRFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAIMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
              ++    +      ++     P+  A + E DA      P    S    +    +   
Sbjct: 358 PRDEKNLADIESLIEKTIPRIDLPNAPAAKPEGDAPEKADKPKRTRSRGKPKTDTAEAEA 417

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           A+                     E   P     G  R R+D       G    +F
Sbjct: 418 AETPTRD------------DVPTEVPAPQQKARGGRRGREDESKVVGMGDHMPSF 460


>gi|218889170|ref|YP_002438034.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218769393|emb|CAW25153.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 639

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 212/472 (44%), Gaps = 16/472 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPHKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +       ++P   +  + + + +   Q     D  +   ++         +P+  
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSN 427

Query: 417 AAGFLR------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A            R       +    +  + + R   ++R  K       +
Sbjct: 428 VAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVD 479


>gi|148613856|ref|NP_001091974.1| probable ATP-dependent RNA helicase DDX17 isoform 3 [Homo sapiens]
          Length = 731

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 236

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 237 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 295

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 296 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 355

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 356 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 415

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 416 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 475

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 476 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 535

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 536 VLEEANQAINPK 547


>gi|38201710|ref|NP_006377.2| probable ATP-dependent RNA helicase DDX17 isoform 1 [Homo sapiens]
 gi|110611789|gb|AAH00595.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 729

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 177 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 236

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 237 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 295

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 296 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 355

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 356 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 415

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 416 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 475

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 476 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 535

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 536 VLEEANQAINPK 547


>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 477

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L +  
Sbjct: 8   LSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNSRE 67

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             ++        AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G
Sbjct: 68  AQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLRLRSLVVFGGVSINPQMMKLRGG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+
Sbjct: 128 VDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   V +   N     +      V    +   +  ++  +  
Sbjct: 188 FSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+A
Sbjct: 248 QQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R   
Sbjct: 308 ARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLK 367

Query: 365 VSVV------WEPAPSVEA 377
             +       +EP PS++A
Sbjct: 368 REIPRIAIEGYEPDPSIKA 386


>gi|242059637|ref|XP_002458964.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
 gi|241930939|gb|EES04084.1| hypothetical protein SORBIDRAFT_03g043450 [Sorghum bicolor]
          Length = 578

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 180/367 (49%), Gaps = 6/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L     + A+
Sbjct: 165 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQ 224

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+  E     + +        GG     + RDL+ G 
Sbjct: 225 -PRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGV 283

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 284 EIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYW 343

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYHG 243
           SAT    +  LA+ + ++  +V I S   + +    + V V         ++        
Sbjct: 344 SATWPREVEALARQFLQNPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMD 403

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATDV
Sbjct: 404 GSRILIFFQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDV 463

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLF 360
           AARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +            R   ++ 
Sbjct: 464 AARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKIL 523

Query: 361 REANVSV 367
           REA  +V
Sbjct: 524 REAGQAV 530


>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
 gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 476

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L +  
Sbjct: 8   LSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSRE 67

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +        AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G
Sbjct: 68  AQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+
Sbjct: 128 VDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   V +   N     +      V    +   +  ++  +  
Sbjct: 188 FSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+A
Sbjct: 248 QQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R   
Sbjct: 308 ARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLK 367

Query: 365 VSVV------WEPAPSVEA 377
             +       +EP PS++A
Sbjct: 368 REIPRIAVEGYEPDPSIKA 386


>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 426

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 204/392 (52%), Gaps = 2/392 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    +  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +N++        A+ +APTRELA Q+   ++     T V      GG  +  +++ L+ G
Sbjct: 65  DNEKPRQRHQTRAVILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +H+    +++++L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  + TLA    +   RV++A EN     I +    V    +   +  ++     
Sbjct: 185 FSATFSAQMNTLAGKILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   + G+ARV IATDVA
Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V  + +  +   +++     
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQQVETLIG 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDS 395
             +  +     E   R+   +R+   P F + 
Sbjct: 365 QRIYRKELEGYEPKNRDALLERMHTKPAFKNR 396


>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 433

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 195/382 (51%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + EN   +  S    L + PTRELA QV   +E         V    GGV V  + + L
Sbjct: 63  -MVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL +H+    L++S +  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       ++   +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE +Q  R  AL+    G+ RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 362 LIGQKIRRITVPGYE-VGSRDL 382


>gi|332521202|ref|ZP_08397660.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043295|gb|EGI79492.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 411

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 203/376 (53%), Gaps = 5/376 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + +  A++E+GY N T +QE  +   L +KDV+ SAQTG+GKT AF L +  
Sbjct: 2   SFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  + D         AL I+PTRELA+Q+    +     T +   V  GG S+  ++  
Sbjct: 62  LLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDV 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D  +   +N+ +++ +VLDEAD MLD+GF DD++ I    P ++
Sbjct: 122 LRKGVDILIATPGRLLDLHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAEK 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT+   +  LAK    +  RV ++  +   ++I+     V    +    +++LR
Sbjct: 182 QILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLLR 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V +  K L  + ++  ++ G+ SQ  R  AL   +     + IA
Sbjct: 242 NTVKGKIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNILIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ +++ VI+ ++ + PE  +HR GRTGRAG  GM+      + +   + + 
Sbjct: 302 TDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYIKTIQ 361

Query: 361 REANVS---VVWEPAP 373
           +  N+    V   P P
Sbjct: 362 QLINLQLDIVEDHPYP 377


>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
           U112]
 gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
 gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
           subsp. novicida FTE]
          Length = 441

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 194/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + ++  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLDLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +        EA
Sbjct: 359 EHLIGHLLPRAELEGFEA 376


>gi|148906344|gb|ABR16327.1| unknown [Picea sitchensis]
          Length = 504

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 195/385 (50%), Gaps = 12/385 (3%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F     P  + E + + G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 98  VKNFGDAGFPDYVIEEIVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 157

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E     A + +      GG     + 
Sbjct: 158 IVHVNAQ-PYLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQV 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I+ I+     
Sbjct: 217 RDLSKGVEIVIATPGRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+    +  +V I S + + +  I+    +V+  ++   ++ 
Sbjct: 277 DRQTLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQ 336

Query: 238 ILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L      + + +F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 337 LLEEIMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQ 353
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +            
Sbjct: 397 IMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYFTAANARFA 456

Query: 354 RRAERLFREANVSVVWEPAPSVEAI 378
           R   ++  EA  S+    +PS+  +
Sbjct: 457 RDLIKILEEAGQSI----SPSLAEM 477


>gi|328786029|ref|XP_001122722.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Apis
           mellifera]
          Length = 1030

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 123/475 (25%), Positives = 223/475 (46%), Gaps = 11/475 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 380 LEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLAD 438

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 439 GDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 498

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 499 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 558

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL ++  K +A
Sbjct: 559 FPRQMEALARRILTRPVEVQVGGRSIVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSA 618

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 619 IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARG 678

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ 
Sbjct: 679 LDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAG 738

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P        +A +  D +++     F       ++    +   K   +K A G  
Sbjct: 739 VPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESEAALANEKKKFQKAALGLQ 798

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +    +    S+++ +   R+ +R              S+   L +  +
Sbjct: 799 DSDDEDIENDIDQQIESMLAPKRTVREIARPSATNIAVPGQPVPSATDKLELARR 853


>gi|304410127|ref|ZP_07391746.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307302161|ref|ZP_07581919.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351536|gb|EFM15935.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306914199|gb|EFN44620.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 433

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 194/387 (50%), Gaps = 3/387 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + EN   +  S    L + PTRELA QV   +          V    GGV +  + + L
Sbjct: 63  -MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL +H+    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++  +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + G+  Q  R  AL+    G  RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ 388
                +     P  E        + LQ
Sbjct: 362 LIGQQIRRVTVPGYEVGSRELLLKQLQ 388


>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 433

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 194/387 (50%), Gaps = 3/387 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + EN   +  S    L + PTRELA QV   +          V    GGV +  + + L
Sbjct: 63  -MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL +H+    L++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++  +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + G+  Q  R  AL+    G  RV +AT
Sbjct: 242 KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ 388
                +     P  E        + LQ
Sbjct: 362 LIGQQIRRVTVPGYEVGSRELLLKQLQ 388


>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
 gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
          Length = 470

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 126/362 (34%), Positives = 198/362 (54%), Gaps = 3/362 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + +  A+SE+ Y   T +Q   +   L   D++  AQTG+GKT AF L +
Sbjct: 1   MTDFTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A   R +P  A  AL +APTRELA Q+          T   VAV IGG     + 
Sbjct: 61  LHRIAANRARPAP-RACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +++G  ++V TPGRL DH+    + +  ++ VVLDEAD+MLDLGF   I  I+   P+
Sbjct: 120 RRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPR 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ +MFSAT+   I  LA  + +D   V ++ E++    ID + +L+A  ++ + +  +
Sbjct: 180 QRQAVMFSATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+    + T+ L +      A+ G  SQ +R  AL   R GR RV 
Sbjct: 240 LADVAVERAIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  V++ EL + PE+ +HR GRT RAG +G+++ ++  +       
Sbjct: 300 VATDIAARGIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRD 359

Query: 359 LF 360
           + 
Sbjct: 360 IE 361


>gi|282899322|ref|ZP_06307291.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195779|gb|EFA70707.1| DEAD/DEAH box helicase-like protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 497

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 23/469 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L           A
Sbjct: 19  LENMGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILERLDPNK------RA 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+QV   +      + + V    GG S+ R+   L+ G H+VVGTPGR
Sbjct: 73  VQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L +  +K  VLDEADEML +GF DD+  IL  +P+ R+  +FSAT+ P+I 
Sbjct: 133 VIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQNRQTALFSATMPPSIR 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            L   +    V V +       + I+  A L+     +  A+  IL     + A++F  T
Sbjct: 193 QLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  L
Sbjct: 253 RRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDLL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    +      P
Sbjct: 313 SHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERHNRQNWQVLSIP 372

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFLRIHRAGLC 429
           +   I  +  Q++ +     +++ G+       ++     K+D + IAA  L++      
Sbjct: 373 TRAQIEAKHIQKLKEQ--VSEALAGERLASFLPIISELTEKYDAQAIAAAALQLAYDQTR 430

Query: 430 AP----------EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                       EE TP   ++ R    D + A +    S+ ++   S 
Sbjct: 431 PAWLQNGVDIPVEEPTPKPKINKRRESSDGNGAGRSRSWSKSDYGDDSR 479


>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
           19424]
          Length = 516

 Score =  207 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 192/383 (50%), Gaps = 7/383 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + I  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L + 
Sbjct: 1   MSFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 60  STLLAENDR------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L     R           A  AL + PTRELA QV   +        +   V  GGV 
Sbjct: 61  QLLSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           ++ +   L+ G  IVV TPGRL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P KR+ L+FSAT S  I  LA     +   + +A  N     +D R   V    +  
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE 240

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +++R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G
Sbjct: 241 LLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAG 300

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             R+ +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +  
Sbjct: 301 TLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEL 360

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
                + R     +     P  E
Sbjct: 361 GLLRDIERLIKRKLEQTVLPGFE 383


>gi|110680325|ref|YP_683332.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456441|gb|ABG32646.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 433

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 203/370 (54%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P  +   L   G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMNLPPELVARLGRMGLKDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L  + R +P  +   L +APTRELA Q+   L      T V VA+ +GG S++ + 
Sbjct: 61  VAQMLELDGRPAP-KSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDEAVFLVLDEADQMLDMGFIHDLRKIASVIPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  LA +Y +  +RV ++   +    +      +A S++   ++ +
Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKPGLLIEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  +   ++ G  SQ +R  A+   + G  +V 
Sbjct: 240 LDKHRDERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + +L + P+N +HR GRT RAG+ G ++     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKA 359

Query: 359 LFREANVSVV 368
           + +   +S+ 
Sbjct: 360 IQKTMGISIP 369


>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
           F2-515]
          Length = 394

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 203/379 (53%), Gaps = 8/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +
Sbjct: 1   MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLEGKDLIGQAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +++         AL IAPTRELA+QV  EL  L     V V    GG  + R+ 
Sbjct: 61  IHKIDQKSNNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P 
Sbjct: 115 RSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I  + + +      + I ++      I+   V V   ++ + +  +
Sbjct: 175 ERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V 
Sbjct: 235 LDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          
Sbjct: 295 VATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRI 354

Query: 359 LFREANVSVVWEPAPSVEA 377
           +       +    AP+ + 
Sbjct: 355 VEETTKKRMQPLQAPTWDE 373


>gi|225155423|ref|ZP_03723915.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224803879|gb|EEG22110.1| Superfamily II DNA and RNA helicase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 536

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 189/372 (50%), Gaps = 6/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++E GY   T +Q   +   L  +DV  SAQTG+GKT AF L +   L A  
Sbjct: 140 LNDALAFAVTEMGYTEPTPIQAQAVPAVLAGRDVTGSAQTGTGKTAAFALPILHKLGAHE 199

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         L + PTRELA+QV    +     T +   V  GGV   ++R DLQ G  
Sbjct: 200 RR------LRCLVLEPTRELALQVEEAFQKYSKYTDLTATVVYGGVGYGKQREDLQRGVD 253

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V  TPGRL DHI    + ++ ++ +VLDE D MLD+GF  D++ I+   P+ R+ L FS
Sbjct: 254 VVAATPGRLLDHIEQGTMTLADVEILVLDEVDRMLDMGFLPDVKRIVQQCPQARQTLFFS 313

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +  LA    +D V + I         I +    V  S + + ++++L     K+
Sbjct: 314 ATLPPELAQLASWALRDPVEIKIGQRRSPAETISHAFYPVVASQKFDLLIDLLSRTEFKS 373

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R    L      V  +  + +Q+ER  AL+  + G+  V +ATD+AAR
Sbjct: 374 VIIFTRTKMGADRIAHRLQREGHTVGVIHSDRNQRERVEALEGFKSGKFEVLVATDIAAR 433

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI+ ++  NPE+ +HR GRTGRA   G +  ++ ++  R A  + R  N  
Sbjct: 434 GLDIAGVSHVINYDVPENPEDYVHRIGRTGRANASGDAFTLVTEDDVRDARSIERYINAE 493

Query: 367 VVWEPAPSVEAI 378
           +  +     + I
Sbjct: 494 IERKKIDGFDYI 505


>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 490

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 184/370 (49%), Gaps = 2/370 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            ++F  + + +  AL+E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +  
Sbjct: 18  FQVF-GLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L    +  P +    L ++PTREL+ Q+            +  A+ IGGV + R+ R 
Sbjct: 77  RMLENRIKPLPKT-CRVLVLSPTRELSGQILESFNAYGRHIRLASALAIGGVPMGRQVRS 135

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G  ++V TPGRL D ++   L ++ ++ +VLDEAD MLD+GF  DI  I+   P KR
Sbjct: 136 IMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRMLDMGFIHDIRKIVAKLPIKR 195

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  LA+   +D  RV +         I  R + +  S +   +  IL+
Sbjct: 196 QTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVDRITQRVIQLDHSAKPTVLAQILK 255

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF  T+    +  K LA       A+ G  SQ  R   L   R G     +A
Sbjct: 256 QDDVNRALVFTRTKHGADKVVKGLARAGIAAEAIHGNKSQNHRERVLAAFRTGEILTLVA 315

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G+++ +           + 
Sbjct: 316 TDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGVAISLCAGEELAYLRDIE 375

Query: 361 REANVSVVWE 370
           +   +++  E
Sbjct: 376 KLIRITLPRE 385


>gi|228985558|ref|ZP_04145712.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774135|gb|EEM22547.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 454

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 199/375 (53%), Gaps = 9/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLTTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAI 378
            +  E    P ++ +
Sbjct: 366 PIQREIIEQPKIKRV 380


>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 433

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 122/387 (31%), Positives = 195/387 (50%), Gaps = 3/387 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+S+ GY  +T +Q+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           ++ +      ++A   L + PTRELA QV   +          V    GGV +  + + L
Sbjct: 63  MVEKPSETLKSNA-RVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL +H+    +++S++  +VLDEAD MLD+GF  DI+ IL +  KKR+
Sbjct: 122 KRGADVIVATPGRLLEHLTACNVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++  +N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +     K L         + GE  Q  R  AL+    G  RV +AT
Sbjct: 242 KNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P LE V++ +L    E+ +HR GRTGRAG+ G+++  + +  +R    + +
Sbjct: 302 EVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIEK 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQ 388
                +     P  E        + LQ
Sbjct: 362 LIGQKIRRVTVPGYEVGSRELLLKQLQ 388


>gi|254294585|ref|YP_003060608.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254043116|gb|ACT59911.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 769

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 3/376 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   + +AL + GY   T +Q   +   +   D+L  AQTG+GKT AF L L
Sbjct: 1   MTKFSDFDLASPVLKALDKEGYETPTPIQAQAIPLVMEGGDILGIAQTGTGKTAAFALPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    D   P  A   L IAPTRELA Q+            + V    GGV + ++ 
Sbjct: 61  LHHLCKLPDMPGPG-AVRCLVIAPTRELASQIAEAFSKYGQCLSLRVLKVFGGVPIRKQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  GA ++V TPGRL D +    +++S+++ +VLDEAD+MLDLGF   +  I  + PK
Sbjct: 120 RDLHRGADVLVATPGRLIDLMEQGAVDLSYVEKLVLDEADQMLDLGFIHPLRRIAAAVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   ++ LA  +  +  +V+IA E+     +      V  + +   ++  
Sbjct: 180 ERQTLFFSATMPSNVSGLANQFLTNPKKVSIAQESTTAERVTQTMSHVNQAQKGPLLLVN 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +    L     +  A+ G  SQ +R  AL   R+G ++V 
Sbjct: 240 LQDESIDRALVFTRTKHGADKVVSKLMNAGIRCGAIHGNKSQAQRERALNAFRNGDSKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+P +  V + E+ + PE  +HR GRT RAGR+G ++  + ++ ++    
Sbjct: 300 VATDIAARGIDVPGVSHVFNYEIPNVPEQYVHRIGRTARAGREGKAISFVSRDEKKYLLD 359

Query: 359 LFREANVSVVWEPAPS 374
           + R+  + +     P 
Sbjct: 360 IQRQIRMKIPIVDLPE 375


>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
 gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
          Length = 441

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 192/390 (49%), Gaps = 10/390 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL ++GY   T++Q+  + P +  +DVL SA TG+GKT AF L    
Sbjct: 6   TFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQ 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+       
Sbjct: 66  HLLDHPRR--KPGPPRILILTPTRELAMQVAEQAEELAQFTNLKIATITGGVAYQNHGEV 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 124 FNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +         +      A  +R+      +       L  +   +  +
Sbjct: 184 YTWLFSATLEGELLVDFAERILNDPVQIDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + +IVF   R SV   ++ L +   +   L GE++Q +R+ A+  ++DG   V 
Sbjct: 244 ISEFEIERSIVFVRRRESVRELSETLRKRGIRSTYLEGEMAQTQRNQAIARLKDGVVNVL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG +V ++  +  +   +
Sbjct: 304 VATDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAVSLVEAHDYKLLGK 363

Query: 359 LFRE----ANVSVVWEPAPSVEAIRERDAQ 384
           + R         ++   AP  +A ++ +  
Sbjct: 364 IKRYTEEPLKPRIIEGLAPRTKAPKDGEVN 393


>gi|152988184|ref|YP_001345923.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963342|gb|ABR85367.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 635

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 212/464 (45%), Gaps = 17/464 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               +          EA+    AQ     P   ++ Q   ++  +    +  P++  A  
Sbjct: 368 TRQRIPDGDPQGFDPEAVLPEVAQ-----PEPREAPQKQPRRDKERRSRERKPKEAQAPA 422

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                AG    E+       +G+ R R          G     +
Sbjct: 423 ENAAVAGQDGAEK------PAGKRRRRGGKNKENREAGQAQQPR 460


>gi|326911972|ref|XP_003202329.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Meleagris gallopavo]
          Length = 645

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 190/372 (51%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 86  SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 145

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 146 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 204

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 205 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 264

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 265 SATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 324

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 325 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 384

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 385 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 444

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 445 VLEEANQAINPK 456


>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
          Length = 1561

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 220/451 (48%), Gaps = 18/451 (3%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 989  NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIYK 1048

Query: 66   NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 1049 -----PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTSCLAVGGLDVKTQEAALRS 1103

Query: 124  GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+    K R+ 
Sbjct: 1104 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSKHRQT 1163

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNIL 239
            ++FSAT++  +  LA    K+  R+ + S       +    + +  +    R+  +  +L
Sbjct: 1164 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 1223

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  + ++F  T+    R   +L     +V  L G LSQ +R  AL+  +D +  + +
Sbjct: 1224 TRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILV 1283

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + +
Sbjct: 1284 ATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 1343

Query: 360  FREANVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
             + A   V     P    ++ R   + + +D   +  ++ +E++M      +    +I  
Sbjct: 1344 VKSAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREM------QQSEAQINK 1397

Query: 419  GFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
               ++         +    S    R+  + +
Sbjct: 1398 AKKQLEEGKQETATKGVERSWFQTREERKKE 1428


>gi|303237006|ref|ZP_07323578.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
 gi|302482786|gb|EFL45809.1| DEAD/DEAH box helicase [Prevotella disiens FB035-09AN]
          Length = 382

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 197/371 (53%), Gaps = 10/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLA 57
           MK FE +   + I  A+ E G+     VQEA++   L    DV+  AQTG+GKT A+G+ 
Sbjct: 1   MKTFEELGVSEEIRHAIEELGFEQPMPVQEAVIPYLLGNGNDVIALAQTGTGKTAAYGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHR 116
           +   +              AL ++PTREL +Q+  +L       G +  A   GG S+  
Sbjct: 61  VLQKVDPTKKE------TQALILSPTRELCLQIADDLSDFSKYIGGLHVAAVYGGASIEM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ GA I+V TPGRL D ++     + ++  VVLDEADEML++GF + I  I +  
Sbjct: 115 QSRQLRKGAQIIVATPGRLIDLMKRGVAKLENVNNVVLDEADEMLNMGFTESINAIFEGI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R  L+FSAT+S  I  +AK+Y  D   + + S N     +++   +V   D+  A+ 
Sbjct: 175 PSERNTLLFSATMSKEIEKIAKSYLHDYKEIVVGSRNEGAEKVNHIYYMVHAKDKYLALK 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+ Y+ +  AI+FC T+         L    +   AL G+LSQQ+R   +Q  R    +
Sbjct: 235 RIVDYYPSIFAIIFCRTKVETQEIADKLIRDGYNAEALHGDLSQQQRDLTMQKFRQHNVQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+D+ DL  VI+  L  + E+  HRSGRTGRAG+KG S+ +I    + + 
Sbjct: 295 FLVATDVAARGLDVDDLTHVINYGLPDDIESYTHRSGRTGRAGKKGTSISIIHTRERYKV 354

Query: 357 ERLFREANVSV 367
             + +     +
Sbjct: 355 REIEKIIQPQI 365


>gi|229069971|ref|ZP_04203249.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
 gi|228713171|gb|EEL65068.1| ATP-dependent RNA helicase [Bacillus cereus F65185]
          Length = 458

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   + +E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 412

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 8/373 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+   Q + + +   GYV  T +Q   +   L  +DV+ SAQTG+GKT AF L + S 
Sbjct: 3   FSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPILSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L +   R      P  L + PTRELA QV   +      T +  AV  GGV   R+   L
Sbjct: 63  LESHQPR------PRLLILEPTRELAAQVETAIRDFARFTNLRAAVLYGGVGYGRQMDAL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++ TPGRL DH+         +K +VLDEAD MLD+GF  D+  I+D  P+ R 
Sbjct: 117 KAGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRMLDMGFLPDVRRIVDKCPRDRH 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+ P I TL K   K+   + I +       + +    VA   + + +  +L  
Sbjct: 177 TSLFSATVPPQIETLIKWAMKNPQTIEIGARRSPAETVKHVIYPVAEDQKSDLLRELLER 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + IVFC T+    R   +L  +   V  L    +Q+ER +AL+  R+GR  V +AT
Sbjct: 237 VNYDSVIVFCRTKHRADRIAILLKRNNHAVAVLHSNRTQREREDALKGFRNGRFEVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ D+  VI+ ++  +PE+ +HR GRTGRA   G +  ++     +  + + R
Sbjct: 297 DIAARGLDIADVSHVINYDVPQHPEDYIHRIGRTGRAAATGDAFTLMVAEDSQHVQSIER 356

Query: 362 EANVSVVWEPAPS 374
                V      +
Sbjct: 357 FIGKKVERIKLEN 369


>gi|218780159|ref|YP_002431477.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761543|gb|ACL04009.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 489

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 5/380 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ + E L + G+   T +Q  +L   L  KD+   AQTG+GKT AF + + S LL  
Sbjct: 29  DLPETLLEGLKDAGFERCTPIQAQVLPVALSGKDIAGQAQTGTGKTAAFLVPMFSKLLGL 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R      P AL +APTRELA+Q+  E E L   T   +A  IGG+   ++   L+ GA
Sbjct: 89  ENRSKTL--PSALIVAPTRELALQIYEEAEVLGGHTDFTIAQAIGGMDYRKQMDILKQGA 146

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ D+ +        +K+VV+DEAD +LDLGF  D+ +IL   P   +    
Sbjct: 147 DILIGTPGRIIDYYKQGIFKTHAIKSVVIDEADRLLDLGFAKDMRYILRKMPHYEKRQSM 206

Query: 186 --SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             SAT+S  +  L  +Y      +++  E      ID     V    +   ++ + +   
Sbjct: 207 LFSATLSYRVLELTYDYMNLPEFISVTPEEVTVKGIDQILYHVGQDQKLPLLLGVFKNED 266

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T++ V      L  + F    ++G+L Q++R   ++  ++G   + +ATDV
Sbjct: 267 WTRALVFVNTKSGVEFVAHKLRGNGFPAGGITGDLPQRKRLQLMERFKNGELSILVATDV 326

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGI + D+  VI+ +L  +PEN +HR GRT RAG+ G ++ +  ++     E +    
Sbjct: 327 ASRGIHVEDVSHVINYDLPQDPENYVHRIGRTARAGKTGKAISLACEHYVFHLEPMEEMI 386

Query: 364 NVSVVWEPAPSVEAIRERDA 383
            +S+  E  P  E  +E  A
Sbjct: 387 GLSLPVE-WPEEEYFQEDKA 405


>gi|228952820|ref|ZP_04114890.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806863|gb|EEM53412.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 458

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   + +E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDSES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|296386927|ref|ZP_06876426.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 639

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 212/472 (44%), Gaps = 16/472 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +       ++P   +  + + + +   Q     D  +   ++         +P+  
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSN 427

Query: 417 AAGFLR------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A            R       +    +  + + R   ++R  K       +
Sbjct: 428 VAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVD 479


>gi|229133365|ref|ZP_04262193.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228650038|gb|EEL06045.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 450

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 218/463 (47%), Gaps = 28/463 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KDV+  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDVIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +  E               I++ P+  +  +  +              +      R  R
Sbjct: 366 PIQRE---------------IIEQPMIKNVDENGKPVQKPAPKKSGQYRQ------RDSR 404

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            G  +  +  P +      R  ++    K         +G   
Sbjct: 405 EGSRSGSKGGPRNDSRNSSRNDNNRSFNKPSNKKSSTKQGQQR 447


>gi|195376137|ref|XP_002046853.1| GJ12262 [Drosophila virilis]
 gi|194154011|gb|EDW69195.1| GJ12262 [Drosophila virilis]
          Length = 778

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L     
Sbjct: 144 FEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVH 203

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 204 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +      +     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 263 ERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRD---NAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   + +I     +   S++      ++ 
Sbjct: 323 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIVKLIQLLT 382

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 383 QISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 442

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 443 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAN 502

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 503 DLIQVLREANQTINPK 518


>gi|227113019|ref|ZP_03826675.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 471

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L +  
Sbjct: 8   LSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSRE 67

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +        AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G
Sbjct: 68  AQHKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLSLRSLVVFGGVSINPQMMKLRGG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+
Sbjct: 128 VDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   V +   N     +      V    +   +  ++  +  
Sbjct: 188 FSATFSDEIKALANKLLTNPASVEVVRRNTPSELVTQHVHFVDKRRKRELLSQLIGENNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+A
Sbjct: 248 QQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGSIRVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R   
Sbjct: 308 ARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLK 367

Query: 365 VSVV------WEPAPSVEA 377
             +       +EP PS++A
Sbjct: 368 REIPRIAIEGYEPDPSIKA 386


>gi|310814605|ref|YP_003962569.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
 gi|308753340|gb|ADO41269.1| DEAD/DEAH box helicase domain protein [Ketogulonicigenium vulgare
           Y25]
          Length = 426

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 192/362 (53%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL+E G    T +Q   +   +  +DVL  AQTG+GKT AFGL +   L+ ++
Sbjct: 8   LSPRLTKALAELGITEPTPIQAQAIPHAMNGRDVLGLAQTGTGKTAAFGLPMIDALIKDS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A    AL +APTRELA Q+   L      + +   V  GG  +  + + ++ G  
Sbjct: 68  RRAQ-AKGARALVLAPTRELAKQIAENLAAYTKDSHLKTVVVTGGAGIGGQIQRMERGTA 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +++S  + +VLDEAD+MLDLGF   +  I    P  R+ ++FS
Sbjct: 127 ILVATPGRLIDLLDRKAIDLSQTEFLVLDEADQMLDLGFIHALRRIAPLLPANRQTMLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA ++  + +RV +    +  + I      VA   + + ++ +L  H  + 
Sbjct: 187 ATMPKQMEELAASFLSNPIRVQVNPPGQAATKITQSVHFVASRAKTDLLIELLDAHRDEL 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+  + +  K L    + V A+ G  SQ +R  AL+  R G  RV +ATDVAAR
Sbjct: 247 ALVFGRTKHGMEKLAKQLENAGYAVAAIHGNKSQGQRDRALRDFRAGTLRVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD+  V + EL + P+N +HR GRT RAG+ G +V     +       + +    +
Sbjct: 307 GLDIPDVRYVYNYELPNVPDNYVHRIGRTARAGKDGQAVAFCAPDEMGDLRDIQKVMKTT 366

Query: 367 VV 368
           + 
Sbjct: 367 IP 368


>gi|116054159|ref|YP_788602.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|313111948|ref|ZP_07797737.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
 gi|115589380|gb|ABJ15395.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310884239|gb|EFQ42833.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           aeruginosa 39016]
          Length = 639

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 212/472 (44%), Gaps = 16/472 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +       ++P   +  + + + +   Q     D  +   ++         +P+  
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSN 427

Query: 417 AAGFLR------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A            R       +    +  + + R   ++R  K       +
Sbjct: 428 VAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVD 479


>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 484

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 26  SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 86  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 146 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 205

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 206 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 265

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 266 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 325

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 326 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 385

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 386 VRMLGRDVEIRDVPGYE 402


>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 485

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 181/368 (49%), Gaps = 3/368 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +     I +AL+E GY N T +QE  +   L  +D+L  AQTG+GKT AF + +   
Sbjct: 3   FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62

Query: 62  LLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  E  + +        L + PTRELA+Q+            +   V  GGVS H +   
Sbjct: 63  LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNT 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D +    +++  ++  VLDEAD MLD+GF  D++ ++   P  R
Sbjct: 123 LKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTHR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P +  LA     +  +V +   +     I+     V   D+   +V+IL 
Sbjct: 183 QSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHILD 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+A+VF  T+    +  K L +      A+ G  SQ  R  AL   +    RV +A
Sbjct: 243 DKNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L  VI+ EL + PE  +HR GRTGRAG  G+++             + 
Sbjct: 303 TDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLRDIH 362

Query: 361 REANVSVV 368
           +     V 
Sbjct: 363 KLIGKRVP 370


>gi|229103076|ref|ZP_04233764.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
 gi|228680360|gb|EEL34549.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-28]
          Length = 450

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDTES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|195069886|ref|XP_001997052.1| GH22580 [Drosophila grimshawi]
 gi|193891570|gb|EDV90436.1| GH22580 [Drosophila grimshawi]
          Length = 793

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 196/376 (52%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q   +   L  +D++  AQTGSGKT+A+ L     
Sbjct: 148 FEEGGFPDYVMNEIRKQGFTKPTAIQAQGMPIALSGRDLVAVAQTGSGKTLAYVLPAVVH 207

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+        + T V      GG    ++ RDL
Sbjct: 208 INNQ-PRLERGDGPIALVLAPTRELAQQIQAVASEFGSNTQVRNTCIFGGAPKGQQARDL 266

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 267 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 326

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR 240
           +LM+SAT    +  LA+ +  + ++VNI S +   + +I     +   S++   +V +L 
Sbjct: 327 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDESEKIAKLVQLLT 386

Query: 241 YHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
               +N    I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 387 QISGENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 446

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 447 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 506

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 507 DLIQVLREANQTINPK 522


>gi|333030556|ref|ZP_08458617.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332741153|gb|EGJ71635.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 378

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 199/367 (54%), Gaps = 6/367 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I +AL+E+GY   T +QE  + P +  +D+L  AQTG+GKT AF + + 
Sbjct: 1   MTFKELNIIEPILQALTEKGYSTPTPIQEQAILPAIDHQDILGLAQTGTGKTAAFSIPII 60

Query: 60  STLL-----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L       E +      A  AL + PTRELA+Q+G  L+     T +   V  GGV  
Sbjct: 61  QHLHLDSLQKEGEEKIAKRAIRALILTPTRELAIQIGESLKDYTRYTDLQYTVIFGGVKQ 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G  I+V TPGRL D +    + I+ ++  VLDEAD MLD+GF  DI+ +L 
Sbjct: 121 GSQVNRLKAGVDILVATPGRLLDLMHQGHIKINKVQHFVLDEADRMLDMGFIHDIKRLLP 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK R+ L FSAT+  +I +L+++  K+ +R+ +   +     I+     V  +D+ + 
Sbjct: 181 RLPKNRQTLFFSATMPRSIASLSRSILKNPIRIEVTPASSVVDTIEQEVYFVEQNDKKDL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V +L     K+ +VF  T+   ++  K + +       + G  SQ  R  AL+  +  +
Sbjct: 241 LVKLLHEGDMKSVLVFSRTKHGANKIVKAITKAGITSEPIHGNKSQNARQRALENFKAHK 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+ +LELV++ +L + PE  +HR GRTGRAG  G ++     + + 
Sbjct: 301 TRVLVATDIAARGIDIENLELVVNYDLPNIPETYVHRIGRTGRAGNVGKALTFCAASERI 360

Query: 355 RAERLFR 361
             + + +
Sbjct: 361 FLKDIEK 367


>gi|114777228|ref|ZP_01452239.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
 gi|114552373|gb|EAU54856.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Mariprofundus ferrooxydans PV-1]
          Length = 426

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 204/464 (43%), Gaps = 42/464 (9%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A++++GY   T VQ   +   L   DVL  AQTG+GKT  F L +  
Sbjct: 2   SFEKLGLSADLLRAVADQGYETPTPVQANSIPVILAGHDVLAGAQTGTGKTAGFTLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +   S      AL + PTRELA QVG  +        +   V  GGV ++ + + 
Sbjct: 62  LMHKTHPERSRNHPIRALVLTPTRELAAQVGESIATYGKYLPLRSTVVFGGVGINPQIQK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  I+V TPGRL D I     N+ H++  VLDEAD MLD+GF  DI  +L   PKKR
Sbjct: 122 LQRGVDILVATPGRLLDLIGQGKANLGHVEFFVLDEADRMLDMGFIHDIRKVLKMLPKKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA  +   A      + N     +      V+ + + + + +++R
Sbjct: 182 QNLLFSATFSEEIKKLANGF-LHAPVYVEVARNETAHQVTQVVHPVSKAKKRDLLSHLIR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   ++ T  L       VA+ G  SQ  R+ AL   + G  RV +A
Sbjct: 241 QGDWQQVLVFTKTKHGANKLTTQLESDGITAVAIHGNKSQTARTKALAGFKAGSVRVMVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL    E+ +HR GRTGRAG  G S+ ++  + ++    + 
Sbjct: 301 TDIAARGLDIDSLPHVVNYELPHVAEDYVHRIGRTGRAGNSGESLSLVSGDEKKLLVGIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R     +     P  E                                  +D E +AA  
Sbjct: 361 RLIKKPIAKVVVPGFEP---------------------------------NDAEDVAAA- 386

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                A    P +           R    +R+ + G  +R   K
Sbjct: 387 -----AKEPKPGQRGQRRHDPSSPRKPHSNRSRRPGRNARAASK 425


>gi|71906517|ref|YP_284104.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71846138|gb|AAZ45634.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 425

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 196/372 (52%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   +  A++++GY   T +Q+  +   +  +D++ +AQTG+GKT  F L +   L +  
Sbjct: 8   LKAELLRAVADQGYDTPTPIQQQAIPAVMTGRDLMATAQTGTGKTAGFTLPILHRLCSGP 67

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           NDR +  A  P  L + PTRELA+QV   +        +      GGV ++ +  +L+ G
Sbjct: 68  NDRLTRVAKTPRVLVLTPTRELAIQVEESVRTYGKHLPITSLAVFGGVGINPQIANLRRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++ + +++S ++  VLDEAD MLD+GF  DI  I+   PK+R+ LM
Sbjct: 128 VDILVATPGRLLDHVQQRTVDLSKIEIFVLDEADRMLDMGFIRDIRKIIALLPKQRQNLM 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA     +   V++A+ N     +  R +      +   + ++    G 
Sbjct: 188 FSATFSPDIRELAAGLLHNPASVDVAARNTAAETVTQRVIETNRDQKKELLCHLFETRGW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+      +K L +   +  A+ G+ SQ  R+ AL   ++G+    +ATD+A
Sbjct: 248 HQVLVFARTKHGADALSKTLEKAGIKSAAIHGDKSQGARTRALTEFKEGKLVALVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  VI+ EL +  E+ +HR GRTGRAG +G ++ ++  + +     + R   
Sbjct: 308 ARGIDIDALPYVINYELPNVAEDYVHRIGRTGRAGMEGEAISLVSHDERGSLRDIERLIK 367

Query: 365 VSVVWEPAPSVE 376
             +     P  E
Sbjct: 368 RDLERVVIPGFE 379


>gi|326202741|ref|ZP_08192609.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325987325|gb|EGD48153.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 414

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 197/381 (51%), Gaps = 3/381 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+  N+   I +AL   GY   T +Q+  +   L  KD++  AQTG+GKT AF + +  
Sbjct: 2   LFDELNLISPIQKALMAEGYTAPTDIQKQTIPLLLEGKDLVGCAQTGTGKTAAFAIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E           AL + PTRELAVQ+G          G+  +V  GGVS   +   
Sbjct: 62  MLSVEQRDSKELRRIKALILTPTRELAVQIGESFTVYGQYLGLKNSVIFGGVSQKPQTDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I  K +N+ H+K  VLDEAD MLD+G   D++ I+   PK R
Sbjct: 122 LEEGVDILIATPGRLLDLINQKYINLHHIKFFVLDEADRMLDMGLVADVKRIISHLPKIR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+ P ++ L  +   D V+V +   +     I+     V   D+   +  +L+
Sbjct: 182 QTMLFSATMPPDVSKLIDSILTDPVKVAVTPISSTVDIIEQAVYFVGKKDKKLLLTQLLK 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VF  T+    +  K LA+      A+ G  SQ  R  AL   +D + RV +A
Sbjct: 242 NKSITSALVFSRTKHGADKIVKELAKVRIHAEAIHGNKSQGARQRALNNFKDKKTRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L + PE  +HR GRTGRAG  G+++     + +   + + 
Sbjct: 302 TDIAARGIDVEGLSYVINYDLPNIPETYVHRIGRTGRAGLGGVALSFCDADEKPYLKDIE 361

Query: 361 REANVSV-VWEPAPSVEAIRE 380
           +  + S+ V E  P    I E
Sbjct: 362 KLISKSIPVIEDHPYTLTITE 382


>gi|15595625|ref|NP_249119.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|9946285|gb|AAG03817.1|AE004480_1 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
          Length = 639

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 212/472 (44%), Gaps = 16/472 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +       ++P   +  + + + +   Q     D  +   ++         +P+  
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSN 427

Query: 417 AAGFLR------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A            R       +    +  + + R   ++R  K       +
Sbjct: 428 VAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVD 479


>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
 gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 196/385 (50%), Gaps = 6/385 (1%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M I F ++   + +  AL   GY+  T +Q   L   +  +D++ SAQTGSGKT AF L 
Sbjct: 1   MTIQFSDLLHDKNLLAALRSAGYIEPTPIQVQALPAAIDGRDIMASAQTGSGKTAAFLLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHR 116
               +   +D+      P  L + PTRELA QV +  +              +GG S   
Sbjct: 61  SLQRITRRSDK--SGKGPRILVLTPTRELAAQVEKNAKIYAQNMKWLRTVTLVGGSSFGF 118

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L     +VV TPGRL DH+R   ++   L+ +VLDEAD MLD+GF DDIE I+ ++
Sbjct: 119 QIKALAKPIDLVVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAAT 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   A+  LA+   K+   + I  E+ Q    +        + ++  + 
Sbjct: 179 PESRQTLLFSATWDGAVGKLARRLTKNPEVIEIEREDNQGKIDEQLFYCDDKNHKNRLLD 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +ILR       I+F ST+A   +    L E  F    L G++ Q  R+  L  +R GR +
Sbjct: 239 HILRDANIDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMDLRKGRIK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+P +  VI+ +L    E+ +HR GRTGRAGR G+++     N     
Sbjct: 299 VLVATDVAARGIDVPSITHVINYDLPKQAEDYVHRIGRTGRAGRHGLALTFAEVNEYVAV 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
            ++ +     +       +E  R+R
Sbjct: 359 HKIEKYLGRKLPEFTIEGMEPTRKR 383


>gi|126726299|ref|ZP_01742140.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
 gi|126704162|gb|EBA03254.1| DEAD/DEAH box helicase [Rhodobacterales bacterium HTCC2150]
          Length = 438

 Score =  206 bits (524), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 118/362 (32%), Positives = 194/362 (53%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + LS +G+ + T +Q   +   L  +D++  AQTG+GKT AFGL +   L    
Sbjct: 3   LSPRILDRLSSKGFTDPTPIQSQAIPHILNGRDIMGLAQTGTGKTAAFGLPILHHLWHVG 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    SA  AL +APTRELA Q+   L      T + VA+ +GGVS++ + + LQ G  
Sbjct: 63  TKPEDRSA-RALILAPTRELASQITENLLIFSRDTHLKVALVVGGVSINTQIKRLQKGTD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  + + +S  + +VLDEAD+MLD+GF  D+  I    P++R+ +MFS
Sbjct: 122 VLVATPGRLLDLLNRRAITLSDARYLVLDEADQMLDMGFIHDLRKISTHLPEERQTMMFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA+ Y    +RV ++   +    +      +   D+   +  +L  H  + 
Sbjct: 182 ATMPKLMGELAETYLNSPLRVQVSPPGKAADKVTQEVHFMLQGDKGQHLKKLLGNHREER 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  K L    F   ++ G  SQ +R+ AL+  + G  ++ +ATDVAAR
Sbjct: 242 ALVFSRTKHGAEKLKKGLVAVGFAAASIHGNKSQGQRTRALEEFKSGEVKILVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V + +L + PEN +HR GRT RAG +G ++     +       + +    +
Sbjct: 302 GIDIPQVMYVYNYDLPNVPENYVHRIGRTARAGAEGTAIAFCSPDEMGELRAIEKVLKST 361

Query: 367 VV 368
           + 
Sbjct: 362 IK 363


>gi|195612018|gb|ACG27839.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 744

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 156/562 (27%), Positives = 254/562 (45%), Gaps = 35/562 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ ++
Sbjct: 95  LPDELVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQD 154

Query: 67  DRF--SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D         P  L +APTRELA QV +E++    K G V     GGVS + ++  L  G
Sbjct: 155 DGRITRRGRTPRVLVLAPTRELAKQVEKEIKESAPKLGTVC--VYGGVSYNVQQNALSRG 212

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D I G  L +  ++ +VLDEAD+ML +GF +D+E IL   P  R+ ++
Sbjct: 213 VDVVVGTPGRIIDLINGGSLQLGEVQYLVLDEADQMLAVGFEEDVETILQQLPAGRQSML 272

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ Y  + + ++      E        Y   L A S R      I  Y
Sbjct: 273 FSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTATSKRTVLSDLITVY 332

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V +AT
Sbjct: 333 AKGGKTIVFTRTKK-DADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 391

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R  + L R
Sbjct: 392 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSLER 451

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   +  +   PS+E + E  A+ ++     +            + L  +  P  +A+  
Sbjct: 452 DVGCNFEFISPPSIEEVLESSAEHVIATLRGVHPESTKYFLGAAEKLTEELGPHALASAL 511

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
              H +G   P     +            +R    G G          F           
Sbjct: 512 A--HLSGFSQPPSSRSLISHEQGWVTLQLTREQGFGRG----------FF---------S 550

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            R +   L          +G I +  D        ++  +    L  T++L  G  L  +
Sbjct: 551 PRSVTGFLSDVCSAAADEVGKIYLTADENVQGAVFDLPEEIAKDLL-TMELPPGNTLTKI 609

Query: 537 GGEKPDFRGYKSSGFKSKNSQD 558
                      ++    + S D
Sbjct: 610 SKLPALQDDGPATDSYGRFSND 631


>gi|328543973|ref|YP_004304082.1| DEAD/DEAH box helicase [polymorphum gilvum SL003B-26A1]
 gi|326413717|gb|ADZ70780.1| DEAD/DEAH box helicase domain protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 486

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 142/461 (30%), Positives = 215/461 (46%), Gaps = 10/461 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L    
Sbjct: 8   LSEKVLSAVKAAGYTEPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + R +  GA 
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFEKYGVNHKLNVALLIGGVSFADQDRKIDRGAD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+    L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 125 VLIATPGRLLDHVERGKLMLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHG 243
           AT+ P I  L + + ++  ++ +A  +    ++    V    V    R      +     
Sbjct: 185 ATMPPEIQRLTETFLQNPAKIEVAPRSSTAENVTQYIVAAGSVDFEKRAKLRELLGEAED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAIVFC+ +  V+   + L  H F V  L G++ Q+ R   L+  R G   + +A+DV
Sbjct: 245 LKNAIVFCNRKRDVTTLFRSLERHGFNVGCLHGDMDQRTRMQTLESFRKGTLTLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G+S  ++     +    + +  
Sbjct: 305 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGVSYTLVTGEDSKYLSAIEKLI 364

Query: 364 NVSVVW--EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           N S+ W  EP     A  ER  +R         +  G EK+       K    +      
Sbjct: 365 NKSITWLGEPLDFEAAEAERKERRRAGKGTGRTARGGAEKREPGEKPQKSRAGEPRRALD 424

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    G     E T  S        RD S   +      D 
Sbjct: 425 K--DEGGAPKRERTRASSARDAKPARDRSEPRRDRSHETDE 463


>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 452

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 195/369 (52%), Gaps = 3/369 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + I  AL++ GY   T +Q  ++   +  +D++  AQTG+GKT +F L +
Sbjct: 1   MTQFSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L+ EN    P +   AL ++PTREL+ Q+   +        V   + +GGV    + 
Sbjct: 61  LNRLIEENRPTHPKT-CRALILSPTRELSAQILENVRGYSRHMRVSSTLVVGGVKPGPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++   + +S  K ++LDEAD+MLDLGF   I  I+   P 
Sbjct: 120 RALSKGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQMLDLGFFPAIRKIVSFLPN 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+  + SAT+   I  LA+    D   V++A  +R    I+   VL+    + + ++ +
Sbjct: 180 KRQTALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKESKKDLLLEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF  T+    +  + L ++  +  A+ G  SQ +R  AL   + G  ++ 
Sbjct: 240 MSDRAVERAIVFSRTKHGADKINRHLVDYGLKSAAIHGNKSQAQRIKALDGFKTGAVKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  V++ +L + PE+ +HR GRT RAG+ G++V +           
Sbjct: 300 VATDIAARGIDVDNVSHVVNHDLPNLPESYVHRIGRTARAGKSGVAVSMCEPGEYEYLRD 359

Query: 359 LFREANVSV 367
           + R   + +
Sbjct: 360 IERLTGLDI 368


>gi|15422163|gb|AAK95821.1| RNA helicase-like protein [Homo sapiens]
          Length = 796

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 401 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 460

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 461 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++  HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 521 DVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 580

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 581 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 636

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 637 LEKGKEAVVQEPERSWFQTKEERKKEK 663


>gi|24375277|ref|NP_719320.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24350080|gb|AAN56764.1|AE015812_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 535

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 217/461 (47%), Gaps = 21/461 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+SE+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELL--AK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + +    AL + PTRELA QVG  +E       +  AV  GGV ++ +   L++G  
Sbjct: 66  GHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D ++   +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      V +++   N   + +      V  + +   ++ +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQENWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +  + + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIERLINRV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +       +           P    + QG + K+           K  A   +   A
Sbjct: 366 LERQEVEGFSPVHAL--------PETTLNPQGKDTKV-----------KAVANHRKHRSA 406

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           G  AP   +       R+  +  + A        +N + + 
Sbjct: 407 GKPAPRSGSGRDTQGNRENSQRQNSASSRNSNEHNNTEAAV 447


>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 545

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 143/463 (30%), Positives = 220/463 (47%), Gaps = 19/463 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP+ + +A+++ GY   T +Q   +   +  KDV+  AQTG+GKT  F L L   +    
Sbjct: 9   IPE-LLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLHRIARHA 67

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA     AL +APTRELA+QV   ++       +      GGV +  ++ +L+ G
Sbjct: 68  NTSTSPARHQTRALILAPTRELAMQVFESVKTYSKHLPLRSVCVYGGVDIRPQQAELRRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL DH+  K +N+S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+
Sbjct: 128 IEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRMLDMGFIPDIKRILALLPKQRQSLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA    K+   + +A  N     I +    V+   + N + ++LR+   
Sbjct: 188 FSATFSDEIKRLADQMLKEPQLIEVARRNMVSETITHVVHPVSSGMKRNLLAHLLRHKPD 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF  T+    R    L        A+ G+  QQ+R++ L+  + G+ RV +ATDVA
Sbjct: 248 TQALVFVDTKLMCGRLAHYLERSGISADAIHGDKGQQQRTDTLEAFKSGKLRVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ EL    E+ +HR GRTGRAG  G ++ ++    +     + +   
Sbjct: 308 ARGLDIDELPFVINFELPHTAEDYVHRIGRTGRAGHHGYAISLVSSEEKHWLSEIEKLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           + +  E  P  +            DP F ++     +       A     +  A      
Sbjct: 368 LQIPQERVPGFDP-----------DPDFHEAGSRGHRGRRPAAAAADTEAQAPAA----- 411

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           R+G                 R R+  RA    G S     G  
Sbjct: 412 RSGGRERGVERSAEARREPAREREGLRAGPRRGRSSVAADGFD 454


>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 460

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|83942539|ref|ZP_00955000.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
 gi|83846632|gb|EAP84508.1| DEAD/DEAH box helicase [Sulfitobacter sp. EE-36]
          Length = 433

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 208/382 (54%), Gaps = 3/382 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 61  VAQMLEREARPEPRT-VRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    I      +A +++ + ++ +
Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 240 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           + +   +S+        EAI E
Sbjct: 360 IQKTMKISIPVASGRPWEAIDE 381


>gi|242787406|ref|XP_002481000.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
 gi|218721147|gb|EED20566.1| RNA helicase (Dbp), putative [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 115 VETFDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 175 IVHINAQ-PLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 234 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 294 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   LQ  ++G+
Sbjct: 354 HLEKIMDDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 414 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 473

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 474 QARDLVTILSEAKQQI 489


>gi|163789335|ref|ZP_02183776.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875403|gb|EDP69466.1| putative ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 411

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 123/362 (33%), Positives = 198/362 (54%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A+   GYV  T VQ+  + P L +KDV+VSAQTG+GKT AF L +   L  + D 
Sbjct: 10  KPLQKAIEASGYVEPTLVQQRAIPPILDKKDVIVSAQTGTGKTAAFALPILQQLFDQQDA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL I+PTRELAVQ+ +  +     T +   V  GG S+  +   L+ G  I+
Sbjct: 70  PKRGKKIKALIISPTRELAVQIQQNFKTYAQFTNLRSLVIFGGTSIEPQIDVLKKGIDIL 129

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +N+ H++  VLDEAD ML +GF DD++ I    P+ ++ L+FSAT
Sbjct: 130 VATPGRLLDLHKQDYVNLDHIETFVLDEADLMLAMGFIDDVKKIERLCPENKQTLLFSAT 189

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I   I  LA    KD  R+++        D+      V   ++    ++++R     N +
Sbjct: 190 IPYKIEQLASGILKDPERIDVTPTRSVAKDVSQILYYVPKRNKIELCLHLMRNTIKGNVL 249

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+  V++  + L ++ + V ++ G+ +Q +R  AL   ++G  +V IATDVAARGI
Sbjct: 250 IFRRTKFGVNKLEQTLLKNGYTVDSIHGDKNQSDRQTALNKFKNGYVKVLIATDVAARGI 309

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L+ V + ++ +  E  +HR GRTGRAG  G +  +   + +   + + +  NV + 
Sbjct: 310 DIDELDNVFNFDMPNQAETYVHRIGRTGRAGNIGKAYAMCSADEKSYVKIIEQYINVQIP 369

Query: 369 WE 370
            E
Sbjct: 370 IE 371


>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
 gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           3TCK]
          Length = 464

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 124/400 (31%), Positives = 198/400 (49%), Gaps = 2/400 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EA++++GY   + +Q   +   +  KDV+ +AQTG+GKT  F L +   L +  
Sbjct: 8   LSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLERL-SNG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P +   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 67  PRVKP-NQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    L+ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     +      V  S + N +  +L+ +    
Sbjct: 186 ATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T  L     +  A+ G  SQ  R+ AL   +    +V +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL    E+ +HR GRTGRAG +G ++ ++  +  +    + R     
Sbjct: 306 GLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLIKQV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +  E     EA+ +    R+   P+     + D +     
Sbjct: 366 LPREQVSGFEAVNKLPESRLDTRPIKPKKPKKDHRDGQRS 405


>gi|156064127|ref|XP_001597985.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160380609|sp|A7E449|DBP2_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp2
 gi|154690933|gb|EDN90671.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 572

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 148 VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 207

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 208 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL     
Sbjct: 267 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA +Y  D ++VNI S     N + + I          D+   
Sbjct: 327 DRQTCMWSATWPKEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 386

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 387 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 446

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q+
Sbjct: 447 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 506

Query: 355 RAERL---FREANVSV 367
           +A  L     EA   +
Sbjct: 507 QARDLVNVLTEAKQVI 522


>gi|30249765|ref|NP_841835.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180802|emb|CAD85718.1| putative ATP-dependent RNA helicase protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 457

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 136/458 (29%), Positives = 210/458 (45%), Gaps = 6/458 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     I +A+   GY   T +Q+  +   +   DV+ SAQTG+GKT AF L    
Sbjct: 2   SFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L            P  L + PTRELA+QV             +  V  +GG+    + +
Sbjct: 62  RLAT--PAQIRGRGPRILVLTPTRELALQVSDAASKYGKFLPRINVVSILGGMPYPLQNK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DHI    ++ S L+ +VLDEAD MLD+GF  D+E I  S+P  
Sbjct: 120 LLSQTVDVLVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIQDVERIALSTPAT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNI 238
           R+ L+FSAT+  AI  +A    K   R+ +A+++ +   I+     +  L+ ++  + ++
Sbjct: 180 RQTLLFSATLDVAIEKIATRLLKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKNRLLDHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    K AIVF +T+         L+    +  A+ G+++Q+ER+  L  +R GR ++ 
Sbjct: 240 LRDTTIKQAIVFTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +L    E+ +HR GRTGRAG  G++V           +R
Sbjct: 300 VATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFASGKDVAHLKR 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R       +   P +E   +    R    P    S      K         +    + 
Sbjct: 360 IERFTGNRFEFHVIPGIEPRTKPRFGRSDDKPGRRPSSSAAAHKTRRSWSDNPNTRTASP 419

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           G      AG   P             +F    R  +  
Sbjct: 420 GHRGDKDAGFGQPFGRETRKRPFRDSKFNSADRFARTE 457


>gi|113477200|ref|YP_723261.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
 gi|110168248|gb|ABG52788.1| DEAD/DEAH box helicase-like [Trichodesmium erythraeum IMS101]
          Length = 495

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 193/388 (49%), Gaps = 14/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L   G+   T +Q   + P L  KD++  AQTG+GKT AF L +   +  + 
Sbjct: 10  ISEERANHLETIGFTEPTPIQAQAIPPLLEGKDIVGQAQTGTGKTAAFSLPILEQIDIDT 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-------VVAVCIGGVSVHRERR 119
                 +A  AL + PTRELA+QV   +                 V    GG S+ R+ +
Sbjct: 70  ------NAVQALILTPTRELALQVTEAIRQFTGINSKGPTKRRLFVLTVYGGQSIERQSQ 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G HIVVGTPGR+ D +    L + HLK +VLDEADEML +GF  D+E IL+++P +
Sbjct: 124 RLQKGVHIVVGTPGRIIDMLNRNSLKLDHLKMMVLDEADEMLSMGFIQDVEKILEAAPAE 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNI 238
           R+   FSAT+  +I  L   Y +  V V +A +      I     ++     +  A+  I
Sbjct: 184 RQTAFFSATMDYSIRKLVNKYLQSPVTVKVAQQKTTPKRITQTVYILPRGWSKGKALQPI 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A++F  TR + +  T  L      V    G L+Q +R   L   R+ + R  
Sbjct: 244 LELEDPEAALIFVRTRQAAAELTNQLQSAGHSVDEYHGNLNQSQRERLLTRFRNQQVRWV 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  VI+ +L  + ++ +HR GRTGRAGR+G ++ +I    +R+   
Sbjct: 304 VATDIAARGLDVDHLTHVINYDLPDSVDSYVHRIGRTGRAGREGTAISLIHPVDKRKLRL 363

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI 386
           + R     +     P    I  R  Q++
Sbjct: 364 IERHLRQRLNTRSIPKRSQIEARQLQKL 391


>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 448

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 186/371 (50%), Gaps = 3/371 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L + 
Sbjct: 1   MKFEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML 60

Query: 60  STLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L       +        AL + PTRELA QV   +        +   V  GGV ++ +
Sbjct: 61  HRLSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ G  I+V TPGRL D  +   L++S ++ +VLDEAD MLD+GF  D++ +L   P
Sbjct: 121 IDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K ++ L+FSAT S  I  LA    K+   + +   N     I      V    +   +++
Sbjct: 181 KDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I++ H     +VF  T+   +   + L ++  Q +AL G  SQ  R+ AL   + G  R 
Sbjct: 241 IIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIRA 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ DL  V++ E+ +  E+ +HR GRTGRAG  G +V ++  + +    
Sbjct: 301 LVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM 360

Query: 358 RLFREANVSVV 368
            + R     + 
Sbjct: 361 DIERFTKQQIP 371


>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
 gi|167668347|gb|EDS12477.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
           17241]
          Length = 439

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 191/378 (50%), Gaps = 6/378 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE +   Q I  A+ + GYV  +++Q+  + P L   DVL  AQTG+GKT AF + +
Sbjct: 19  MK-FEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPI 77

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA+Q+    +       +   V  GGV    + 
Sbjct: 78  LQRLDTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRYMRLRSTVVFGGVPQTPQV 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  I+V TPGRL D I    +++S +   VLDEAD MLD+GF  D+E +++  P 
Sbjct: 138 DELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDEADRMLDMGFIHDVERVINHLPN 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+  AI  L      D V+V +   +     I+ R   V   ++   ++ +
Sbjct: 198 KRQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPVEAIEQRLYFVDKPNKRRLLIYL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      +A+VF  T+    R  + L +   +  A+ G+ SQ  R  AL   ++G  RV 
Sbjct: 258 LEDVSIVSALVFTFTKHGADRVARELVKAGIKAQAIHGDKSQGARQRALSAFKNGDIRVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRR 355
           +ATD+AARGID+ +L  V + +L + PE  +HR GRTGRAG  G+++     +       
Sbjct: 318 VATDIAARGIDIDELSHVFNYDLPNIPETYVHRIGRTGRAGLGGIAISFCSIVEMENLHA 377

Query: 356 AERLFREANVSVVWEPAP 373
            E+L       V   P P
Sbjct: 378 IEKLIGRKIPVVKENPYP 395


>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 463

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 192/378 (50%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L  E  +  P    P AL + PTRELA QV   L        +  AV  GGV +  +  
Sbjct: 62  YLGTEPQKVGPGPRKPRALVLTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +V+  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   PK+
Sbjct: 122 SLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRMLDMGFLPSIKRILAKLPKQ 181

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  + FSAT   +I  LA  + ++   V +  +N     I +R   V  + +   ++++
Sbjct: 182 NRQTLLFSATFPESIKQLAMEFMRNPREVQVTPQNTVAETIAHRVHPVDTARKRELLLHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        +VF  T+    +    L +   Q  A+ G  SQ +R  AL   + G+ +V 
Sbjct: 242 LGQDARVQTLVFAKTKHGSDKLATHLEKAGIQAAAIHGNKSQGQRLRALGDFKSGKVKVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q   +   +
Sbjct: 302 VATDIAARGIDIDQLPRVINYDLPMVAEDYVHRIGRTGRNGANGEALSLVSQEDAKYLRQ 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P  E
Sbjct: 362 IVRMLGRDMEIRDLPGFE 379


>gi|261415437|ref|YP_003249120.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371893|gb|ACX74638.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 486

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 185/373 (49%), Gaps = 6/373 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE +P    +  A+   GY   T +QE  +   L  KD+L  AQTG+GKT AF L +
Sbjct: 1   MK-FEELPLANPLQRAVRAVGYETPTPIQERSIPSLLEGKDLLGIAQTGTGKTAAFALPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL      SP +   AL + PTRELA+QV          T +  A   GGV+ + ++
Sbjct: 60  LQRLLDSGKFRSPKT-CRALILLPTRELAIQVEDCFREYAQFTAISTACIFGGVNDNPQK 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  ++V TPGRL D I  K +++  L+  VLDEAD MLD+GF  DI  ++   P+
Sbjct: 119 QKLIRGVDVLVATPGRLLDLIGQKAISLKKLEFFVLDEADRMLDMGFIHDIRKVVAMLPQ 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+   I+ LA    +        +      +   + +      R  A++  
Sbjct: 179 DRQNLFFSATMPEEISKLAATILRPNPVRVEVAPQSTPIERIRQELYRIDKRRKGALLKE 238

Query: 239 LRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           L     +    +VFC T+    +  +VL +   +  A+ G  SQ  R  AL   +  + R
Sbjct: 239 LLAEHPEMKKVLVFCRTKHGADKIVRVLEKAGIKCAAIHGNKSQNRRQEALGNFKCEQIR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ D+  V + +L +  E  +HR GRT RAG++G+++     + +   
Sbjct: 299 VLVATDIAARGIDVDDVSHVFNYDLPNEHETFVHRIGRTARAGKEGVAISFCSPDEESDL 358

Query: 357 ERLFREANVSVVW 369
             + +   V +  
Sbjct: 359 RGIEKLTRVKIPE 371


>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 537

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 188/361 (52%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+S+ GY   T +Q   +   L   D+L +AQTG+GKT  F L +   L A +
Sbjct: 12  LAEPLLRAISDTGYTTPTPIQAKAIPLVLAGGDLLAAAQTGTGKTAGFTLPVLHKLAATH 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               PA  P  L + PTRELA QV   ++       +   V  GGV+++ +   L+    
Sbjct: 72  VHPHPAGKPRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKKRVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+  K L++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHVGQKTLDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     ++    ++    +   +  +++      
Sbjct: 192 ATFSDEIRDLANGLLHNPGCVEVAPRNTASERVEQTVYMIGQKQKRELLAWLIKEKQWFQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   ++  + L +H     A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 252 ALVFTRTKHGANKLAEYLTKHDIPAAAIHGNKSQSARTRALSQFKDGSLPVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++     +    + R     
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGADGNAISLVDGEEVKLLTAIERLIRRK 371

Query: 367 V 367
           +
Sbjct: 372 I 372


>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
 gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
          Length = 559

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 195/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 21  MTKFSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 81  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFGEQD 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 138 KLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFQMTPF 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     R+ +A +     +I+   ++   S +D      
Sbjct: 198 TRQTLFFSATMAPEIERITNTFLSAPERIEVARQATTSENIEQGVLMFKASRKDREATEK 257

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+ 
Sbjct: 258 RKVLRALIDAEGDKCTNAIIFCNRKMDVDTVAKSLKKYGYDAAPIHGDLDQSQRTKTLEG 317

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 318 FRNGDLRFLVASDVAARGLDVPSVSHVYNYDVPSHAEDYVHRIGRTGRAGRDGKAIMICV 377

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
              ++  E + R     +     P
Sbjct: 378 PRDEKNLEDVERLVQREIPRLDNP 401


>gi|212633675|ref|YP_002310200.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 482

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +PA    AL + PTRELA QVG  +E       +  AV  GGV +  +   L  G  
Sbjct: 68  K--APAKQVRALVLTPTRELAAQVGESVEIYGKNLPLKSAVIFGGVGIGPQISKLSRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +N S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    + + +V +++ H  + 
Sbjct: 186 ATFSDDIRKLAKGLVNNPVEISVTPRNATANTVKQWICPVDKGQKASVLVKLIKQHDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    +      +
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIELLIKQN 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 LERRVIEGFE 375


>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
 gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
          Length = 506

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 140/501 (27%), Positives = 223/501 (44%), Gaps = 36/501 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  LSLLSRGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---------S 229
            R+ L FSAT++P I  +   +  +  RV +A +      I+   V+             
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPSRRENADSEK 237

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +    +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RKLLRALIDREGAACSNAIIFCNRKIDVDVVAKSLIKYGYDAAPIHGDLDQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G  R  IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRAGTLRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRSGKALMICN 357

Query: 350 QNMQRRAERLFREANVS-VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
              ++        A V  ++ +  P VE+                +  QG E++      
Sbjct: 358 PRDEKNL------AGVEALIQKEIPRVESPVTFTPP-----TTETEPPQGSEERPAKPRR 406

Query: 409 AKH----DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDN 462
           A++     PE+  A     H+A     E+    +    R + R   R    +       N
Sbjct: 407 ARNVSRGKPEERPAA---SHKAPETVSEQAVEATPPQERPQERRPERTPEPRQDRNRDRN 463

Query: 463 FKGSSWFSLSVGSKQ-KAEAR 482
              +       G +      R
Sbjct: 464 DDNAPRHREGRGRQDHGGGPR 484


>gi|10434683|dbj|BAB14343.1| unnamed protein product [Homo sapiens]
          Length = 765

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 215/447 (48%), Gaps = 12/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 193 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 252

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 253 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 310 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L  
Sbjct: 370 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 430 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++  HR GRT RAGR G SV ++ ++ ++  + + +
Sbjct: 490 DVAARGLDIEGVKTVINFTMPNTIKHYDHRVGRTARAGRAGRSVSLVGEDERKMLKEIVK 549

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK+M       +     A   
Sbjct: 550 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRL 605

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
           L   +  +    E +       R + +
Sbjct: 606 LEKGKEAVVQEPERSWFQTKEERKKEK 632


>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 389

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 185/372 (49%), Gaps = 3/372 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + +  AL++ GY   T +Q   +   L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTDFAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+    +P     AL ++PTRELA Q+   +       G+  AV  GGV    + 
Sbjct: 61  LHHL-ADRKAPAPRGGCRALILSPTRELASQIHDNIRAYGRFLGLSSAVIFGGVGARPQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH++     +  ++ +VLDEAD+MLD GF   ++ +     K
Sbjct: 120 EALRRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQMLDRGFWPAVKRLSSVMSK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+   I  +A    KD  +V++         I+ + + +  S +   +  +
Sbjct: 180 NRQTLFFSATMPAEIAKIAAEMLKDPAKVSVTPVATTAERIEQKLIHIDASQKRVLLSEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR  G   A+VF  T+    R TK L        A+ G+ SQ +R  AL   R GRA + 
Sbjct: 240 LRQPGIGRALVFARTKHGADRVTKHLNADGIAAHAIHGDRSQGQRERALAEFRTGRAPIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+A+RGID+  +  V   +L   PE  +HR GRT RAG  G ++     +   + + 
Sbjct: 300 VATDIASRGIDVDGVTHVFQFDLPDTPEAYVHRIGRTARAGASGEAIAFCAPDEVAKLKA 359

Query: 359 LFREANVSVVWE 370
           + +   + +  E
Sbjct: 360 VEKLIAMKIPAE 371


>gi|224477065|ref|YP_002634671.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421672|emb|CAL28486.1| putative helicase [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 507

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 231/472 (48%), Gaps = 16/472 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+++       E L   G+   T +Q   +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQKFKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           AL +APTRELA+QV  +L        V VA   GG+ + R+ 
Sbjct: 61  IEKVVDKE-------GVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +K +++DEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPS 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  M FSAT+  AI TL + + K    V   +       ID    +V   ++     N
Sbjct: 174 EDRQTMLFSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG+KG++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++ +  +  +     P  + +   RE D +  ++  +  +  +  +     +L   +D E
Sbjct: 354 QIEQTNDRRMRALRPPHRKEVLRARENDIKEKVEKWMSQEHSERLQDISSQLLNEYNDVE 413

Query: 415 KIAAGFLRIHRAGLCAPEEIT---PVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            ++A    +  A      ++T   P++   GR   +   R+ K    S + F
Sbjct: 414 LVSALLQELVEANDEVEVQLTFEKPLARKGGRHNSKGPRRSGKPNKRSNNKF 465


>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 512

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 184/370 (49%), Gaps = 3/370 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + +  A++E GY   T +Q   +   L  +DVL  AQTG+GKT AF L +
Sbjct: 8   MTEFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPI 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R + A +P  L + PTRELA+Q+G           +   V  GGV    + 
Sbjct: 68  LQRLFQNKKRVA-AKSPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQV 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL D +    +N+  ++  VLDEAD MLD+GF  D+  ++   PK
Sbjct: 127 AAIARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRMLDMGFIRDVRKVVAVLPK 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+  A+  LA +   DA R+ +  ++     I+ R + V   D+   + ++
Sbjct: 187 ERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTVERINQRVLFVERGDKRRLLADL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        IVF  T+    R    L +      A+ G+ SQ  R  AL+  R+G  R  
Sbjct: 247 LEDEAMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRAL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ +L + PE+ +HR GRT RAG  G +V           + 
Sbjct: 307 VATDIAARGIDIDGISHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDHEEVGYLKD 366

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 367 IEKTIRQPIP 376


>gi|228908214|ref|ZP_04072060.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
 gi|228851412|gb|EEM96220.1| ATP-dependent RNA helicase [Bacillus thuringiensis IBL 200]
          Length = 454

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKINPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|238493219|ref|XP_002377846.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
 gi|317157028|ref|XP_001826178.2| ATP-dependent RNA helicase dbp2 [Aspergillus oryzae RIB40]
 gi|220696340|gb|EED52682.1| RNA helicase (Dbp), putative [Aspergillus flavus NRRL3357]
          Length = 556

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L  
Sbjct: 131 VETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 190

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 191 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 249

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 250 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 309

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 310 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 369

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 370 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 429

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 430 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 489

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 490 QARDLVTILTEAKQQI 505


>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 462

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 194/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L   D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTTPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDT 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDINELPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|213406193|ref|XP_002173868.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001915|gb|EEB07575.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 553

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  + + +   G+ + T +Q+      +  +D++  + TGSGKT+++ L  
Sbjct: 125 ISTFEEAGFPNYVLKEVQALGFESPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 184

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E       + +      GGV    + 
Sbjct: 185 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQECTKFGHTSRIRNTCVYGGVPRGPQI 243

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 244 RDLARGVEICIATPGRLLDMLDSGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 303

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNA 234
            R+ +MFSAT    +  LA++Y KD ++V + S +       + I           R + 
Sbjct: 304 DRQTVMFSATWPKEVQRLARDYLKDYIQVTVGSLDLAASHNITQIVEVVDPADKRARLSK 363

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF  T+      T+ L +  +  +A+ G+ +Q ER   L   R G+
Sbjct: 364 DLEKAMEDKESKVLVFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 423

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +     Q   +
Sbjct: 424 SPIMVATDVASRGIDVKGITHVFNFDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTQENSK 483

Query: 355 RAER---LFREANVSVVWEPAPSVEAI 378
           +A     + REA  ++     P +E +
Sbjct: 484 QARDLIGILREAKQNI----DPKLEEM 506


>gi|206971476|ref|ZP_03232426.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733461|gb|EDZ50633.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 458

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|118082784|ref|XP_416260.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
           [Gallus gallus]
          Length = 655

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 190/372 (51%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ + +AL ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 96  SFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 156 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 215 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 275 SATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 334

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 335 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 394

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 395 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 454

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 455 VLEEANQAINPK 466


>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 472

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 214/465 (46%), Gaps = 15/465 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     + +A+   GY   T +Q   + P L  KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPM 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L +   R   A  P +L +APTRELA QV    E    +  + +A+ IGGV +  + 
Sbjct: 60  IDILASGRRR---ALMPRSLILAPTRELAAQVAENFEKYGKQHDLQLALLIGGVQMGDQV 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIE I    P+
Sbjct: 117 KALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIETICSKLPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I  LA+ +  +  R+ ++     + +I    + V   ++   +  +
Sbjct: 177 PRQTLLFSATMPPPIEKLAQKFLTNPKRIEVSRAASTNENITAFKIPVKAREKRETLRWL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AI+F + + +V    K L  H F    + G++ Q  R   L   + G   + 
Sbjct: 237 LANDHVETAIIFANRKTTVREINKSLQSHGFASGEIHGDMDQSSRIAELNRFKAGEVNIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+DVAARG+D+  +  V + +   +P++ +HR GRTGRAG KG +   +  +       
Sbjct: 297 VASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVTDDDAEAIAN 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     +        E +R    + +  +P      +  +++  D      D E   A
Sbjct: 357 VEKLTESKIKPF---GKEDVR---VELVEAEPKRESGRKRSDERKADAPERDDDRESRKA 410

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
              +  R      +E        GR       R+    G   DN 
Sbjct: 411 ---KPARERKPRRDESQRDEARPGRSAENRSPRSQGGRGRREDNE 452


>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
 gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
          Length = 561

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/445 (29%), Positives = 231/445 (51%), Gaps = 15/445 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   + +  +
Sbjct: 29  NLSEDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTD 88

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL IAPTRELAVQ   EL       GV V    GG S+ ++ + L++GA
Sbjct: 89  ENII------QALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIDKQIKALKSGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P +R+ L+F
Sbjct: 143 HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNMGFLEDIEAIISRVPSERQTLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +   + K+   V I ++   + +++   V V   ++ + +  ++     +
Sbjct: 203 SATMPAPIKEIGVKFMKNPEHVQIKNKELTNVNVEQFYVRVKEQEKFDTMTRLMDVDQPE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  +  +  + +ATDVAA
Sbjct: 263 LSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKGDQIDILVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +      
Sbjct: 323 RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKTGESITFVSPNEMGYLSMIENLTKK 382

Query: 366 SVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKKMVDVLL---AKHDPEKIAAG 419
            +      + E     +++ A + ++     ++I+ +  K     L   ++  PE++A  
Sbjct: 383 QMKPLKPATAEEAFQAKKKVALKKIERDFADEAIRSNFDKFKADALKLASEFTPEELALY 442

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRD 444
            L +    +  P ++  V +   + 
Sbjct: 443 ILSLT---VQDPADLPEVEIAREKP 464


>gi|224010271|ref|XP_002294093.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220970110|gb|EED88448.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 471

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 194/383 (50%), Gaps = 7/383 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P+ +   + + G+   T +Q       L+ K+++  + TGSGKT+AF L    
Sbjct: 70  TFEEASMPEYVLSEVIKCGFDKPTPIQSQGWPMALKGKNMVGISATGSGKTLAFLLPAMI 129

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+     P   P+ L +APTRELAVQ+  E +   A + +   V  GGV   ++ R 
Sbjct: 130 HINAQQ-YLKPGEGPIVLVLAPTRELAVQIKEECDKFGASSEIKNTVVYGGVPKSKQVRS 188

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL DH+     N+  +  +VLDEAD MLD+GF   +  I+      R
Sbjct: 189 LREGVEIVIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 248

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVN 237
           ++LM+SAT    +  LA++Y  D  +V + S +    +               R+     
Sbjct: 249 QVLMWSATWPKEVQNLARDYLSDFYQVTVGSLDLAGNKDVTQMIDVCSDQDKYRNLLRYL 308

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+      T+ L    FQ  A+ G+ SQ+ER   L+  +  +A +
Sbjct: 309 RENLTSKDRVLVFVETKKGCDMLTRSLRMDGFQARAMHGDKSQEERDWVLREFKSCQATL 368

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +ATDVAARG+D+ D+++V++ +  ++ E  +HR GRTGRAG+KG +V F + +   R A
Sbjct: 369 LVATDVAARGLDVDDIKMVVNFDFPNDTETYIHRIGRTGRAGKKGFAVSFFVTEKNGRMA 428

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
             +    N +    P   + A++
Sbjct: 429 RDIIEILNRTQQNVPPELLNAVQ 451


>gi|312219930|emb|CBX99872.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1226

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 15/372 (4%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            +  F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 816  VTTFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPA 875

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 876  IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 934

Query: 119  RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 935  RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 994

Query: 179  KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             R+  M+SAT    +  LA +YQ D ++VN+ S +        + V           +  
Sbjct: 995  DRQTCMWSATWPKEVRQLASDYQNDWIQVNLGSMDLSAHHRIQQIV---------EHLET 1045

Query: 239  LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G++ + 
Sbjct: 1046 IMSDKENKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIM 1105

Query: 299  IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRR 355
            +ATDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG  G ++ +         R 
Sbjct: 1106 VATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENSKQARD 1165

Query: 356  AERLFREANVSV 367
              ++  E+   +
Sbjct: 1166 LVQILTESKQQI 1177


>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
           CFBP2957]
 gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CFBP2957]
          Length = 495

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 16  TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL E N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 76  NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 136 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 196 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 255

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 355 RAERLFREANVSVVWEPA----PSVE-----------------AIR------ERDAQRIL 387
               + +    ++  E      P+ E                  IR      ER+  R+L
Sbjct: 376 LLADIEKLIKRNLPREALVDFDPTGEQARERDRRERDERRNRTEIRRSRERDERNGARVL 435

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +     +  E          + P + A        AG     +    +L+ G  R R
Sbjct: 436 DHTVVRPPFRPSEDPFFSRPYESNVPAETAESAKPAQAAGHPRSAKRPIAALLGGVPRKR 495


>gi|207723759|ref|YP_002254157.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 495

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 16  TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL E N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 76  NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 136 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 196 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 255

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 315

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 355 RAERLFREANVSVVWEPA----PSVE-----------------AIR------ERDAQRIL 387
               + +    ++  E      P+ E                  IR      ER+  R+L
Sbjct: 376 LLADIEKLIKRNLPREALVDFDPTGEQARDRERRERDERRNRTEIRRSRERDERNGARVL 435

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +     +  E          + P + A        AG     +    +L+ G  R R
Sbjct: 436 DHTVVRPPFRPSEDPFFSRPYESNVPAETAESAKPAQAAGHPRSAKRPIAALLGGVPRKR 495


>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 793

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 224/479 (46%), Gaps = 7/479 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+ E GY + T +Q   +   L+  DVL  AQTG+GKT +F L +   L    
Sbjct: 298 LSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLQKLAGSR 357

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA+QV    +       +  A+ IGG S+  +R  L  G  
Sbjct: 358 AR---ARMPRSLILEPTRELALQVAENFKLYGKYLRLTHALLIGGESMAEQRDVLNRGVD 414

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D     GL ++    +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 415 VLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRMLDMGFIPDIEKIVALLPAHRQTLFFS 474

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P I  LA  + +  V + ++ ++   + I+   V+V   ++   +  +LR    ++
Sbjct: 475 ATMAPEIRRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDEKRRTLKKLLRRENVQS 534

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC+ +  V    + L +H  +   L G+L+Q  R + L+  R G  +  + +DVAAR
Sbjct: 535 AIVFCNRKRDVDMIQQYLTKHDIEAGHLHGDLAQSLRFSTLERFRSGELKFLVCSDVAAR 594

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + +L  N E+ +HR GRTGRAG +G +  +     +R  E +       
Sbjct: 595 GIDIGGLSHVFNYDLPFNAEDYVHRIGRTGRAGNEGHAFSLATPRDRRLLEAIETLTGKV 654

Query: 367 V---VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +   V E   +V+   E   +R  +          +E +       +   ++        
Sbjct: 655 IARPVLEGITTVDWAPEEGERRPAETATPAPQDVAEEGEQRPRKRRRGGRKRNRGDRDES 714

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                 AP  +  V+++      R  +        G +  F G +   + V  ++K   
Sbjct: 715 ETVQQVAPTAVASVAVIEAPVSHRSVELAPAFENDGPKTGFGGDTPAFMLVPRRRKVTV 773


>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
          Length = 566

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 228/480 (47%), Gaps = 35/480 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 87  TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 146

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL E N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 147 NLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 206

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 207 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 266

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 267 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 326

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 327 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIERMQTLEAFKQGT 386

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 387 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 446

Query: 355 RAERLFREANVSVVWEPA----PSVE-----------------AIR------ERDAQRIL 387
               + +    ++  E      P+ E                  IR      ER+  R+L
Sbjct: 447 LLADIEKLIKRNLPREALVDFDPTGEQARDRERRERDERRNRTEIRRSRERDERNGARVL 506

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +     +  E          + P + A        AG     +    +L+ G  R R
Sbjct: 507 DHTVVRPPFRPSEDPFFSRPYESNVPAETAESAKPAQAAGHPRSAKRPIAALLGGVPRKR 566


>gi|323343014|ref|ZP_08083245.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463078|gb|EFY08273.1| ATP-dependent RNA helicase DbpA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 487

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/529 (27%), Positives = 244/529 (46%), Gaps = 68/529 (12%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  F+N  I   I +++   GY   T VQ+ ++   L  K+++V +QTGSGKT +FG+ 
Sbjct: 1   MKHTFKNYGIDDSILKSIQYLGYEAPTDVQQEVIPAVLSGKNIVVQSQTGSGKTASFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +  +      P  L +APTRELA+Q+  +L  L     + V    G  S  ++
Sbjct: 61  ICHQVEWKKRK------PQVLVLAPTRELAIQIQEDLFNLGRFKRLKVEALFGRSSFEKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+   HI+V TPGRL DH+  + +++SH++ +V+DEADEM ++GF D I  I++  P
Sbjct: 115 AQRLKEMTHILVATPGRLLDHMARETVDLSHIETLVIDEADEMFNMGFIDQITSIINRIP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KK + L+FSAT+   +  L   Y K+   ++I +E+R    ID R  +V   D+   + +
Sbjct: 175 KKSQKLLFSATMPERVKDLCTLYIKNPQWIDIETESRVEDRIDERYYIVDYPDKMALLES 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L      ++I+FC+T+  V   T  + +   +V  L G + Q+ R+  L   + G  R 
Sbjct: 235 VLITENPDSSIIFCNTKEQVESVTNFMEDLGCKVDTLHGGMEQRFRTKVLADFKHGLFRY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D+ LV++ ++  N E+  HR GRT R  + G +V            
Sbjct: 295 LVATDVAARGLDIDDVSLVVNFDVPENTESYTHRVGRTARVDKYGKAVTFASP------- 347

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                                                     E K +++++   D E   
Sbjct: 348 -----------------------------------------YEMKFMNLIINDTDHE--- 363

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
               ++ + G         V         + D +       + D  +  +   ++ G K 
Sbjct: 364 --LQKVVKPGQSL------VDARRDAFEAKRDRKPKVKKDKAHDFKQEITKIHINAGKKT 415

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           K     ++  LC   G+N + IG I +    TFVE+     DL+   +K
Sbjct: 416 KMRPVDVVGALCSIEGMNAEDIGVISIVDVSTFVEILNGKGDLVLNALK 464


>gi|229161413|ref|ZP_04289395.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
 gi|228622053|gb|EEK78897.1| ATP-dependent RNA helicase [Bacillus cereus R309803]
          Length = 454

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   V + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMVQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDDLKGRGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PLQREIIEQPKIKRVDE 382


>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
 gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
           DSM 15981]
          Length = 552

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 212/456 (46%), Gaps = 12/456 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  AL    Y   T +QE  +   L  +D+L  AQTG+GKT AF +     L  E
Sbjct: 7   NIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTLQMLSGE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA+Q+          T +   V  GGVS   +  +L+ G 
Sbjct: 67  ETPRWEKRTIKALVVTPTRELAIQIYDSFNTYGQFTDLKSCVVYGGVSQKPQEENLKRGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  K +NI  +K +VLDEAD MLD+GF  D++ I+  +P +++ L F
Sbjct: 127 DILVATPGRLLDLMDQKIVNIEKIKILVLDEADRMLDMGFIHDVKKIIARTPAEKQTLFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA    K+  ++ I         I+     V   ++ + +++IL+     
Sbjct: 187 SATMPPDIAKLAAKILKNPEKIEITPAATTVEAIEQYLYFVDKGNKKDLLLHILKTKDLD 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    R  + L++      A+ G+ SQ  R  AL   +D + RV +ATD+AA
Sbjct: 247 STLVFTRTKHGADRVVRQLSKSNVVAQAIHGDKSQGARQRALNDFKDKKLRVLVATDIAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  V++ +L   PE  +HR GRTGRAG +G+++     + + +   + +    
Sbjct: 307 RGIDIDELACVVNYDLPDVPETYVHRIGRTGRAGLEGIAISFCDFDEKAQLADIEKLIGK 366

Query: 366 SVVWE---------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            +              PSV+A + +       D          +K+   V       E++
Sbjct: 367 KLTEVADHPYPLQNNFPSVKATQPKRGGGKRADQAGAAQGPAKKKEKKAVPGTVESEERL 426

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
           +    +    G   P++  P   +  +      SR 
Sbjct: 427 SK---KSQSTGARTPKKSRPSEALQSKKTSSQGSRR 459


>gi|294901515|ref|XP_002777392.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885023|gb|EER09208.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 531

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 177/376 (47%), Gaps = 9/376 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   + + G+   + +Q       +  +D++  A+TGSGKT+AF L    
Sbjct: 118 TFEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIV 177

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ   E       + +      GG     + R 
Sbjct: 178 HINAQ-PYLQRGDGPIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARA 236

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L NG  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I       R
Sbjct: 237 LANGVEICIATPGRLIDFLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQVRPDR 296

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + L++SAT    I  LA++  ++          S    H+   Y  ++     +D     
Sbjct: 297 QTLLWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQL 356

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R       ++F  T+ +    T++L    +  +++ G+  Q+ER   LQ  + G++ +
Sbjct: 357 LERIMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPI 416

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+ DL  VI+ +     E+ +HR GRTGRAG KG +      +  + A+
Sbjct: 417 MIATDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAK 476

Query: 358 RL---FREANVSVVWE 370
            L    REA  +V  E
Sbjct: 477 DLIGVLREAEQAVPPE 492


>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
 gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
          Length = 449

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 191/376 (50%), Gaps = 4/376 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + +AL E+GY   + +QE  +   L  +D++ +AQTG+GKT  F L +  
Sbjct: 16  TFDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGKTAGFTLPMLE 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL              AL + PTRELA QV            +   V  GGV ++ + + 
Sbjct: 76  TLSHGARPG--RGQIRALVLTPTRELAAQVLDNARDYSRHLRLRSEVVFGGVKINPQIQR 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  ++V TPGRL D  +   +    ++ +VLDEAD MLD+GF  DI  +L   P++R
Sbjct: 134 LQQGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRMLDMGFIHDIRRVLSRLPERR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT SP+I  LA     D +++ I   N+    +        +  + + + +++R
Sbjct: 194 QNLLFSATFSPSIRKLATGLLNDPLQIQITPPNQTARTVQQVVHPCDMKRKPDLLSHLIR 253

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +R  + L        A+ G  SQ  R+ ALQ  +DG  RV +A
Sbjct: 254 SNDWQQVLVFSRTKHGANRVAEKLTNEGLVAAAIHGNKSQGARTRALQGFKDGSVRVLVA 313

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++        + + 
Sbjct: 314 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGECGHAISLVAAEEALLLKAIE 373

Query: 361 REANVSVVWEPAPSVE 376
           R    S+     P  E
Sbjct: 374 RTTRESLEKVLVPGFE 389


>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 520

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 195/383 (50%), Gaps = 7/383 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   I  A++E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L + 
Sbjct: 1   MSFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPML 60

Query: 60  STLLAENDRFS-----PASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L     R +     PA  P+ AL + PTRELA QV   +        +   V  GGV 
Sbjct: 61  QLLSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVG 120

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           ++ +   L+ G  IVV TPGRL DH+  + +++S ++ +VLDEAD MLD+GF  DI  IL
Sbjct: 121 INPQIEQLKRGVEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRMLDMGFIHDIRKIL 180

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +  P KR+ L+FSAT S  I  LA     +   + +A  N     +D R   V    +  
Sbjct: 181 NVLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKRE 240

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +++R H     +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G
Sbjct: 241 LLAHLVRQHDWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKSG 300

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             R+ +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +  
Sbjct: 301 TLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEI 360

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
                + R     +     P  E
Sbjct: 361 ALLRDIERLIKRKLEQTVLPGFE 383


>gi|209695626|ref|YP_002263555.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
 gi|208009578|emb|CAQ79874.1| putative ATP-dependent RNA helicase [Aliivibrio salmonicida
           LFI1238]
          Length = 398

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 187/371 (50%), Gaps = 3/371 (0%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+     I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L +   
Sbjct: 3   FSNLGLSNPILKAINELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPILQM 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  +   A    AL + PTRELAVQV   +        +      GGV    +++ L
Sbjct: 63  LSEEQTKV-RAKRIRALILTPTRELAVQVEDNISKYSKHLDLTSLAMYGGVDYKEQKQRL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+
Sbjct: 122 IEGVDILVATPGRLLDMYTQRAVHFDEIDILVLDEADRMLDMGFIEDINKIIERLPLERQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+S  +  LA+    + + + I   +     ID   + V    +   I ++++ 
Sbjct: 182 NLLFSATLSEQVRALARTAINNPIEITIERNSNAEPKIDQWLITVDKDKKSALISHLIKE 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +    A++F  T+   ++    L +      A     SQ  RS  L   ++GR +  +AT
Sbjct: 242 NDWDQALIFIETKHGAAKLVGQLEKRGITAEAFHSGRSQDARSKVLNDFKEGRLKYLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +AARGID+ +L  VI+ +L    E+ +HR GRTGRAG  G ++  + ++  +    + +
Sbjct: 302 GIAARGIDIDELTRVINYDLPFPAEDYVHRIGRTGRAGSSGEAISFVSRDDFKNLCMIEK 361

Query: 362 EANVSVVWEPA 372
                +V +  
Sbjct: 362 RLGHLIVRKEI 372


>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 486

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 205/380 (53%), Gaps = 4/380 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + +  A++E GY  +T +Q   +   L  +DV+ +AQTG+GKT AF L L 
Sbjct: 3   SSFSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL  E+   SPA  P+ AL + PTRELA QV R++      T +   V  GG+ +  +
Sbjct: 63  QRLLRHESSSASPARHPVRALVLLPTRELADQVARQIALYARHTKLRSTVVFGGIDMKPQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   P
Sbjct: 123 TLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L+FSAT SP I  LA +Y    V + +A  N   + ++ R       D+  AI  
Sbjct: 183 KERTTLLFSATFSPEIRRLASSYLHQPVTIEVARPNATAATVEQRFYSANDDDKRRAIHQ 242

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G K A +F +++   +R  + L     +  AL G+ SQ ER  ALQ  + G   +
Sbjct: 243 VLRTRGLKQAFIFVNSKLGCARLARSLEREGLRTAALHGDRSQDERLKALQAFKSGDVDL 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++  +  R   
Sbjct: 303 LVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARLVA 362

Query: 358 RLFREANVSVVWEPAPSVEA 377
            + +        E     E 
Sbjct: 363 DIEKLIGKKTDLEAIEYDED 382


>gi|123455589|ref|XP_001315537.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121898217|gb|EAY03314.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 598

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 181/372 (48%), Gaps = 7/372 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+P  I + +++  +   T +Q   +   L+  D++  A+TGSGKT AF +    
Sbjct: 126 TFEELNLPDTITKTITDNKWEKPTPIQSVSIPVALKGHDLIGIAKTGSGKTAAFLIPAMV 185

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +   +     P+ L ++PTRELA Q+    +       +      GG     +  D
Sbjct: 186 HIGLQEPMY-RGDGPIVLVLSPTRELAQQIAEVAKGFCDNLMIRQTCLFGGAGRGPQAND 244

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   +VV TPGRL D I G    ++ +  +VLDEAD+MLD+GF   I  I+    K R
Sbjct: 245 LRHLPSLVVATPGRLIDFIEGGQCPMNRVNFLVLDEADQMLDMGFEPQIRKIIGHISKDR 304

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + +MFSAT    I  LA ++       +    +   +S+I          ++ +  + +L
Sbjct: 305 QTMMFSATWPKEIQQLAADFLVDPVHMIIGNKDLTTNSNIKQVITKCEEFEKLSKCLEVL 364

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H     I+F  T+ +     + L    FQ  +L G+ +Q +R   L   R  +  + +
Sbjct: 365 NEHKDDKIIIFTKTKRTTDDLQENLNMKGFQAYSLHGDKAQNQRDFVLGKFRSCKKGILV 424

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRA 356
           ATDVAARG+D+ D+++VI+ +   + E  +HR GRT R  ++G++V       +NM R+ 
Sbjct: 425 ATDVAARGLDVNDIDIVINYDFPGDIETYVHRIGRTARGNKEGLAVTFFTDENKNMSRKL 484

Query: 357 ERLFREANVSVV 368
            ++  +A   + 
Sbjct: 485 AKIMTQAKQELP 496


>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 511

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 189/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +PA    AL + PTRELA QVG  +E       +  AV  GGV +  +   L  G  
Sbjct: 66  GTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L+ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  S +   +V +++ +  + 
Sbjct: 186 ATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    +      +
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIELLIKQN 365

Query: 367 VVWEPAPSVE 376
           +       +E
Sbjct: 366 LERRVVEGLE 375


>gi|28574962|ref|NP_648062.2| CG10077, isoform A [Drosophila melanogaster]
 gi|20976828|gb|AAM27489.1| GH10652p [Drosophila melanogaster]
 gi|28380590|gb|AAF50635.2| CG10077, isoform A [Drosophila melanogaster]
 gi|220947070|gb|ACL86078.1| CG10077-PA [synthetic construct]
 gi|220960420|gb|ACL92746.1| CG10077-PA [synthetic construct]
          Length = 818

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 191/376 (50%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L     
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 218

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 219 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 277

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 278 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 337

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   +    + V V        +   ++ 
Sbjct: 338 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 397

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 398 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 457

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 458 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 518 DLIQVLREANQTINPK 533


>gi|229079638|ref|ZP_04212172.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
 gi|228703680|gb|EEL56132.1| ATP-dependent RNA helicase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|253731082|ref|ZP_04865247.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|297210100|ref|ZP_06926493.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300910462|ref|ZP_07127914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304379262|ref|ZP_07362001.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|253725209|gb|EES93938.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|296885300|gb|EFH24240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300888304|gb|EFK83495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|304342121|gb|EFM08021.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312437505|gb|ADQ76576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|320140748|gb|EFW32600.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320143723|gb|EFW35500.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 517

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 12  LQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 72  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 125 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 184

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 185 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 245 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 305 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 364

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 365 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 423

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 424 DLVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 474


>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 483

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 191/379 (50%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+ E+GY + T VQ   +   L  +D++ SAQTG+GKT  F L L   L +  
Sbjct: 8   LSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLTSRE 67

Query: 66  -NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             ++        AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G
Sbjct: 68  AQNKGKGRRPVRALILTPTRELAAQIDENVKAYSKYLPLRSLVVFGGVSINPQMMKLRGG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D    + +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+
Sbjct: 128 VDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA     +   V +   N     +      V    +   +  ++  +  
Sbjct: 188 FSATFSDEIKALANKLLTNPASVEVVRRNSPSELVTQNVHFVDKRRKRELLSQLIGENNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF  T+   +   ++L +      A+ G  SQ  R+ AL   +DG  RV +ATD+A
Sbjct: 248 QQVLVFTRTKHGANHLAELLEKDGITAAAIHGNKSQGARTRALANFKDGGIRVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R   
Sbjct: 308 ARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAEATGEALSLVCVDEHKLLRDIERLLK 367

Query: 365 VSVV------WEPAPSVEA 377
             +       +EP PS++A
Sbjct: 368 REIPRIAIEGYEPDPSIKA 386


>gi|260773326|ref|ZP_05882242.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260612465|gb|EEX37668.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 428

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/421 (29%), Positives = 214/421 (50%), Gaps = 5/421 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPELVKALTECGYEKLTPIQQQAIPEARKGHDIFATAQTGTGKTAAFSLPVIQRLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + SP +A  AL +APTRELA Q+ + ++     T + V    GG  +  + R L++G
Sbjct: 66  SGKKPSPHTA-RALILAPTRELAAQIAQNIKDYVKYTSLSVTAVYGGNKMSSQVRQLESG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    +++++L+ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHLSEGNVSLANLEFLVFDEADRILDMGFINPVRKIMLEVETSPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+N    N   S + +    V    +   +  ++     
Sbjct: 185 FSATTSAQLNQLAGDILRKPKRINADRVNTTASTVAHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + ++  K L     + V   G+  Q  R  AL   ++G+ARV +ATDVA
Sbjct: 245 QQVLVFVNYKETANQVVKELKLDGIKAVICHGDKGQSARRRALDEFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIVDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLIQVENLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDA--QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +     P  E  ++RDA  +++     F D  QG      +    +   E+  +   R
Sbjct: 365 QRIRRVEQPGYEP-KKRDAYLEKLHTKAAFKDR-QGRRNNPNEDKPDQASAERRLSMMNR 422

Query: 423 I 423
           +
Sbjct: 423 L 423


>gi|229190613|ref|ZP_04317610.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
 gi|228592958|gb|EEK50780.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 10876]
          Length = 458

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|77917983|ref|YP_355798.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
 gi|77544066|gb|ABA87628.1| putative ATP-dependent RNA helicase [Pelobacter carbinolicus DSM
           2380]
          Length = 435

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 200/371 (53%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL++ GY   T +Q   +   L  +D++ SA TG+GKT AF L     L  + 
Sbjct: 8   LDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQRLTVKI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     AP  L +APTRELA QV           G+  AV +GGV    + R L     
Sbjct: 68  AR--RKGAPRMLVLAPTRELAGQVMDAARVYGKYLGLTTAVLLGGVPYRDQFRALAKPLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL DH++ + +++S L+ +VLDEAD MLD+GF++D++ +  ++P++R+ +MF+
Sbjct: 126 LVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLDMGFKEDVDKVCAAAPRQRQTMMFT 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAK 245
           AT++ A+  +A+    D  R++IA        I+    +      ++  + ++L++    
Sbjct: 186 ATLNDAMQKMARRLLDDPFRIDIAVVKNVSDHIEQHLHVADNRQHKNRLLQHLLKHSDIS 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +T+       + L+   ++  AL G+++Q  R+  ++ +R GR RV +ATDVAA
Sbjct: 246 QAIVFSATKRDADSLARDLSAQGYRAAALHGDMNQGARNRTVRDLRRGRIRVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + +L    E+ +HR GRTGRAG  G+++  +         R+      
Sbjct: 306 RGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFVSGAEVSALRRIQHFIGR 365

Query: 366 SVVWEPAPSVE 376
            +     P +E
Sbjct: 366 ELPRREIPGLE 376


>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 507

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 202/392 (51%), Gaps = 14/392 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 61  ITIL---GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L +SAT++P I  +   +   AV++ +A +      I+ + + +  + ++ +    
Sbjct: 178 TRQTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQITPTRKERSFADK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L +H F    + G+L Q +R+  L  
Sbjct: 238 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLDQSQRTKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + +L ++PE+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FRDGTLHLLVASDVAARGLDIPAVSHVFNFDLPTHPEDYVHRIGRTGRAGRKGKAFSIAV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            + ++    +      ++     P   ++ +R
Sbjct: 358 PSDEKYLAAIESLVKQAIPRGELPEGFSLEDR 389


>gi|228921162|ref|ZP_04084492.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838478|gb|EEM83789.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 458

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +   +
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPAS 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKLRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKHVDE 382


>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
 gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
          Length = 509

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 143/469 (30%), Positives = 221/469 (47%), Gaps = 20/469 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +   + L   G+   T VQ   +   L  +D++  AQTG+GKT AF L +   +  + 
Sbjct: 47  ISEARAQHLESIGFTEPTPVQIQSIPQILSGRDIVGQAQTGTGKTAAFSLPILEQIDHQ- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL + PTRELA+QV   +  +  +  + V    GG S+ R+ + L+ G H
Sbjct: 106 -----AKDVQALILTPTRELAMQVKDAIRKMSNERSLYVLTVYGGQSIERQVQRLERGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +    L +  +K +VLDEADEML +GF  D+E IL++S K R+   FS
Sbjct: 161 IVVGTPGRVLDLLSRGKLKLHGIKWLVLDEADEMLSMGFIQDVEKILEASSKDRQTAFFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           ATI P+I  L + +    V V +         I      +     +  A+  IL     +
Sbjct: 221 ATIEPSIWKLVRKFLNSPVTVKVEQPKTTPKQISQEVYTVPRGWTKARALQPILELEDPE 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVF  T+ + +  T  L      V    G L+Q +R   L   R  + R  +ATD+AA
Sbjct: 281 SAIVFVRTKQAAAELTSCLQGAGHSVDEYHGNLNQSQRERLLVRFRKRQVRWIVATDIAA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ +L  N E+ +HR GRTGRAGR+G ++ ++    +R+   + R    
Sbjct: 341 RGLDVDHLTHVINYDLPDNAESYVHRIGRTGRAGREGKAITLLQPMDRRKLRMIERHLRH 400

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +      P    I  R  +R+    L   + +       +V  L  +++P  IAA  L++
Sbjct: 401 NFTTLTIPKRSQIEARYIERLKDKVLEALTGERMASFLPIVAQLGEEYEPHAIAAAALQM 460

Query: 424 HRA---------GLCAPEEIT--PVSLVSGRDRFRDDSRAFKVGGGSRD 461
                            EE+   P   ++ + R RD     K   GS +
Sbjct: 461 AYDQTRPNWEETDYPHEEEVKSIPKPKLTKKRRSRDSEPQNKSSVGSGN 509


>gi|91206538|sp|Q2U070|DBP2_ASPOR RecName: Full=ATP-dependent RNA helicase dbp2
 gi|83774922|dbj|BAE65045.1| unnamed protein product [Aspergillus oryzae]
          Length = 554

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L  
Sbjct: 129 VETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 189 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 248 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 307

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 308 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 367

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 368 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 427

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 428 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 487

Query: 355 RAERL---FREANVSV 367
           +A  L     EA   +
Sbjct: 488 QARDLVTILTEAKQQI 503


>gi|282876512|ref|ZP_06285378.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|281294764|gb|EFA87292.1| putative ATP-dependent RNA helicase DeaD [Staphylococcus
           epidermidis SK135]
 gi|329735713|gb|EGG71996.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU028]
          Length = 509

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 230/475 (48%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  
Sbjct: 354 QIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSREN-EPRLQRISSELLKEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ ++R                 F   + 
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRSNKGGSRRSNHKRGNGKFDNKNR 467


>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 436

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 127/408 (31%), Positives = 196/408 (48%), Gaps = 7/408 (1%)

Query: 1   MK----IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           MK     F+++     +  A++  GY + T +Q   +       D+L  AQTG+GKT AF
Sbjct: 1   MKNIDVSFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L +   L AE         P AL + PTRELA QV  E+     +  +   +  GGV++
Sbjct: 61  ALPIVQML-AETTPAEKRRKPRALVLVPTRELAAQVSDEMNRYARRLSLRSTMIYGGVTI 119

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L  G  IVV TPGRL DH     +++S +K +VLDEAD MLDLGF D+I+ + +
Sbjct: 120 QAQIERLHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRMLDLGFIDEIKKVAE 179

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P K + L+FSAT S  I  LA        RV +A        +      V  S +   
Sbjct: 180 YLPAKHQALLFSATYSQNIKQLADQLLDQPKRVEVARRTLTAEAVTQAVYQVERSRKREM 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +G    +VF  TR    + T+ L     +  A+    SQ  R+  L   + G 
Sbjct: 240 LSFLIRKNGWNQVLVFTRTRYGADKLTEELLFDGIKAAAIHSNKSQSIRTRTLAEFKQGA 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARG+D+  L  V++ +L   PE+ +HR GRTGRAG +G+++ ++ Q  Q 
Sbjct: 300 FRVLVATDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEEGIAISLVSQEEQI 359

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
               + +    S+  +          R   +  +  L  +  +  + +
Sbjct: 360 LLAAIEKLVKQSIPRQSLAEFPQYAVRRTVKAKEGKLAKEQAKPKKTE 407


>gi|121715524|ref|XP_001275371.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
 gi|134034064|sp|A1C6C4|DBP2_ASPCL RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119403528|gb|EAW13945.1| RNA helicase (Dbp), putative [Aspergillus clavatus NRRL 1]
          Length = 549

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 124 VETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 184 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +    +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 363 HLEKIMEDRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKAGK 422

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNSK 482

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 483 QARDLVTILTEAKQQI 498


>gi|220927762|ref|YP_002504671.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219998090|gb|ACL74691.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 542

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 217/465 (46%), Gaps = 21/465 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I +A+ + G+   T VQ   +   L  +D++V ++TGSGKT  FG+++ 
Sbjct: 3   NTFNELGISAPILKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                E         P  L + P RELAVQV  ++  +            G  +++ E +
Sbjct: 63  QLTNPEEA------GPQGLILTPARELAVQVDNDIRKMAKYLKHKTTAIYGQHNINLETQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  IV GTPGR+ DHI    L+  +++ +VLDEAD MLD+GF D +  I+ + PK+
Sbjct: 117 ILNKGVSIVTGTPGRVFDHISHGTLSTKNIRFLVLDEADRMLDMGFLDQVVRIVKTLPKE 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT+ P I  + K Y  + V + I S+ +    I      V  ++++  +  +L
Sbjct: 177 RITLLFSATMPPEIHNICKRYMNNPVTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ ++FC+T+A+V R    L +  +   AL G++ Q +R N +Q  + G+  + +
Sbjct: 237 IVEKPESCMIFCNTKAAVDRVQSFLGKKGYSSRALHGDIPQSKRLNTIQQFKQGKFHILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGI + DL LVI+ ++ ++ +N +HR GRTGRAG +G +  ++  +       +
Sbjct: 297 ATDVAARGIHIEDLSLVINYDVPNDKDNYVHRIGRTGRAGHEGRAFSLVTGDDIISLYEI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  ++ E  P  EA  +   +           I+ +  K      A  D       
Sbjct: 357 EEHIGTLILEEELPDEEAFTKAREEAA-------QWIKANSLKEKAPRSASADSS----- 404

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            ++  R G  +     P        R    SR       S    +
Sbjct: 405 -VKQKRTGQNSKSNRIPNGRPEYSKRPDGQSRHTGKSASSEQRSE 448


>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 493

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 8/387 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +  AL+E GY   T +Q A +       DV+ +AQTG+GKT  F L +  
Sbjct: 14  TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIH 73

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 74  NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 134 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V  + +  A+V++
Sbjct: 194 HRQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHL 253

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR        +  IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 254 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 313

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 314 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 373

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
               + +    ++  E     +   E+
Sbjct: 374 LLADIEKLIKRNLPREQLADFDPTGEQ 400


>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 498

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 205/387 (52%), Gaps = 8/387 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +  AL+E GY   T +Q A +       DV+ +AQTG+GKT  F L +  
Sbjct: 19  TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPIIH 78

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 79  NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVFGGVDMNPQT 138

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 139 EQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 198

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V  + +  A+V++
Sbjct: 199 HRQTLLFSATFSPEIKRLAASYLRHPQTIEVARSNATAENVRQVIYTVPDNHKQAALVHL 258

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR        +  IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 259 LRQRAEQGLPRQCIVFSNSKIGCSRLARALEREGINANAIHGDKTQTERMQTLEAFKQGT 318

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 319 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 378

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
               + +    ++  E     +   E+
Sbjct: 379 LLADIEKLIKRNLPREQLADFDPTGEQ 405


>gi|54302911|ref|YP_132904.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
 gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
           SS9]
          Length = 471

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 195/380 (51%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EA++++GY   + +Q   +   +  KDV+ +AQTG+GKT AF L +   L +  
Sbjct: 14  LSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLERL-SNG 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P +   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 73  PRVKP-NQVRALVLTPTRELAAQVAESVALYAKNLPLSSAVVFGGVKINPQMMRLRQGAD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ +VLDEAD MLD+GF  DI  +L + PK+R+ L+FS
Sbjct: 132 VLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     +      V  S + N +  +L+ +    
Sbjct: 192 ATFSDEIRQLAKGLVNNPVEISVTPRNATAPTVKQWICPVDKSRKANLLTKLLKENNWGQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T  L     +  A+ G  SQ  R+ AL   +    +V +ATD+AAR
Sbjct: 252 VLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANFKSNEIQVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL    E+ +HR GRTGRAG +G ++ ++  +  +    + R     
Sbjct: 312 GLDIEQLPQVVNFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLIKQV 371

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +  E     EA+ +    R+
Sbjct: 372 LPREQVSGFEAVNKLPESRL 391


>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 419

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 191/372 (51%), Gaps = 4/372 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I +AL E GY N T +QE  +   L  +D++  AQTG+GKT AF + + +
Sbjct: 2   TFNDLKLYNNIQQALEEEGYTNPTPIQEQAIPEILLGQDLVACAQTGTGKTGAFAIPILN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +         A     L + PTRELA+Q+    +     T V   V  GGV+   +  +
Sbjct: 62  LIHKIVGSAKKAKHIRTLVVTPTRELAIQIDESFKTYGKYTNVKSLVIFGGVNQVPQVNE 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D  +   +++ HL  +VLDEAD+MLD+GF +D++ I+  +P  R
Sbjct: 122 LKMGIDVLIATPGRLLDLHKQGFIDLDHLHHLVLDEADQMLDMGFINDVKKIIKLTPDNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  AI  LA  +      +++   +    ++  +   V   D+   +  ++ 
Sbjct: 182 QTLLFSATMPIAIRELADTFLTRPKYISVTPISSTAENVSQKVYFVNKDDKRLLLKQLII 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                NA+VF  T+       KVL +   +  A+ G+ SQ  R   L+  ++    + +A
Sbjct: 242 EESLSNALVFTRTKHGADNIVKVLKKAHIKAEAIHGDKSQNARQRVLEQFKNKEIDILVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ ++ +  E  +HR GRTGRAG  G+++    ++ +     + 
Sbjct: 302 TDIAARGIDIEQLPFVINFDIPNISETYVHRIGRTGRAGNSGLAISFCGKDEKPYWLDIE 361

Query: 361 R--EANVSVVWE 370
           +     V +V E
Sbjct: 362 KLIRMKVKIVTE 373


>gi|254243526|ref|ZP_04936848.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
 gi|126196904|gb|EAZ60967.1| hypothetical protein PA2G_04344 [Pseudomonas aeruginosa 2192]
          Length = 639

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 212/472 (44%), Gaps = 16/472 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
               +       ++P   +  + + + +   Q     D  +   ++         +P+  
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSN 427

Query: 417 AAGFLR------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            A            R       +    +  + + R   ++R  K       +
Sbjct: 428 VAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVD 479


>gi|222054856|ref|YP_002537218.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221564145|gb|ACM20117.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 203/373 (54%), Gaps = 4/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+P+ + + +++ G+ + T +QE  L P L  KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFTDLNLPEQVLKGIADTGFTDCTPIQEKALPPALLGKDVAGQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL + ++      P AL +APTREL VQ+ ++ + L   TG  +    GGV   +++ 
Sbjct: 61  TRLLNQ-EKAGTEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQKN 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV+GTPGRL D+++ K  ++ +++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPF 179

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT++  +  LA  +     +V +  E      ++     VA  ++   ++ 
Sbjct: 180 DARQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVARKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G    ++F +T+         L  + F    +SG++ Q++R   L+  ++G+  +
Sbjct: 240 LLRKKGMDRTMIFVNTKREAEYLYDRLNANEFPARVISGDVEQRKRMRILEDFKNGKLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  ++     E
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFHIE 359

Query: 358 RLFREANVSVVWE 370
            +       +  E
Sbjct: 360 DIHEYIKEKIPVE 372


>gi|115456345|ref|NP_001051773.1| Os03g0827700 [Oryza sativa Japonica Group]
 gi|113550244|dbj|BAF13687.1| Os03g0827700 [Oryza sativa Japonica Group]
          Length = 723

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 156/539 (28%), Positives = 253/539 (46%), Gaps = 37/539 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ E+
Sbjct: 76  LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 135

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D  S      P  L +APTRELA QV +E++    K   V     GGVS + ++  L  G
Sbjct: 136 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVC--VYGGVSYNVQQNALSRG 193

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++
Sbjct: 194 VDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSML 253

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ Y  + + ++      E        Y   L + S R      I  Y
Sbjct: 254 FSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVY 313

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V +AT
Sbjct: 314 AKGGKTIVFTKTKR-DADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 372

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L R
Sbjct: 373 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLER 432

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +      +   P++E + E  A+ ++     +  +SIQ       + L  +  P  +A+ 
Sbjct: 433 DVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQ-YFIPAAERLQEELGPNALASA 491

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
               H +G   P     +            +R    G G          F          
Sbjct: 492 LA--HLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG----------FF--------- 530

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLK 534
             R +   L   S      +G I +  D        ++  +    L  +++L  G  + 
Sbjct: 531 SPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLL-SMELPPGNTIT 588


>gi|143455890|sp|Q0DM51|RH3_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           Flags: Precursor
 gi|18855061|gb|AAL79753.1|AC096687_17 putative RNA helicase [Oryza sativa Japonica Group]
          Length = 758

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 156/539 (28%), Positives = 253/539 (46%), Gaps = 37/539 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L+ E+
Sbjct: 111 LPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEED 170

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           D  S      P  L +APTRELA QV +E++    K   V     GGVS + ++  L  G
Sbjct: 171 DGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVC--VYGGVSYNVQQNALSRG 228

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+E IL   P +R+ ++
Sbjct: 229 VDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSML 288

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ Y  + + ++      E        Y   L + S R      I  Y
Sbjct: 289 FSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVY 348

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V +AT
Sbjct: 349 AKGGKTIVFTKTKR-DADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 407

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L R
Sbjct: 408 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLER 467

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +      +   P++E + E  A+ ++     +  +SIQ       + L  +  P  +A+ 
Sbjct: 468 DVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQ-YFIPAAERLQEELGPNALASA 526

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
               H +G   P     +            +R    G G          F          
Sbjct: 527 LA--HLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG----------FF--------- 565

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLK 534
             R +   L   S      +G I +  D        ++  +    L  +++L  G  + 
Sbjct: 566 SPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLL-SMELPPGNTIT 623


>gi|317495876|ref|ZP_07954239.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914053|gb|EFV35536.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 485

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 138/459 (30%), Positives = 232/459 (50%), Gaps = 14/459 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I E+L+   +V+ T +Q   +   L   D+L  AQTGSGKT AFG+ +
Sbjct: 1   MTTFEELGVSSKIVESLTNMNFVSPTGIQTETIPYVLSGIDILAQAQTGSGKTGAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   D         +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  V-------DTVRKTEELQSLILAPTRELAQQVGEQLRLMSRVKGLKVSIIFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+VGTPGR+ DHI  K + +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIIVGTPGRVIDHINRKTIRLETLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L+K++ KD   V   S+   + DI   A +   +++   ++  
Sbjct: 174 RHQTLLFSATMPKTIMELSKDFMKDYKLVKTMSDEDLNPDITEFATIARENEKLETLIGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G++V  +        + 
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKD 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +       +      + E +++    R+ ++ +  LD+   +   + + L+A+ + EKI 
Sbjct: 354 IEASRGERMKMLRPYTSEEVKKARYNRMFEEVVSELDNNHVEFNSLANKLMAEANAEKII 413

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              L    + L   ++   V L   +   R   ++ + G
Sbjct: 414 TVLL----SKLINDKKEVDVELSFEKPLPRKQEKSRRSG 448


>gi|294139619|ref|YP_003555597.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 435

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 129/414 (31%), Positives = 212/414 (51%), Gaps = 4/414 (0%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +         ++A  AL + PTRELA Q+   +        V V    GGV +  + + L
Sbjct: 63  IFDNPMETQRSNA-RALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL +H++   LN+S++  +VLDEAD MLD+GF  DI+ I+ +  K+R+
Sbjct: 122 KRGTDIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +N+ S+N     +      V    +   +  ++  
Sbjct: 182 NLLFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +AT
Sbjct: 242 KNWQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRALVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R    +  
Sbjct: 302 EVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLYDIET 361

Query: 362 EANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
                +     P  E   R+   +++ +   F    Q D+     V+  ++  +
Sbjct: 362 LIGKKLPRVTIPGYEVGSRDMLIKQLHKRRSFAKKQQRDDNAGAQVVAERNMQD 415


>gi|195588318|ref|XP_002083905.1| GD13105 [Drosophila simulans]
 gi|194195914|gb|EDX09490.1| GD13105 [Drosophila simulans]
          Length = 814

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 191/376 (50%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L     
Sbjct: 156 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 215

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 216 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 274

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 275 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 334

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   +    + V V        +   ++ 
Sbjct: 335 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLT 394

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 395 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 454

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 455 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 514

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 515 DLIQVLREANQTINPK 530


>gi|146284249|ref|YP_001174402.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri A1501]
 gi|145572454|gb|ABP81560.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas stutzeri
           A1501]
 gi|327482632|gb|AEA85942.1| DEAD-box ATP dependent DNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 609

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 219/466 (46%), Gaps = 23/466 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLELLFPGG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +       P  L + PTRELA QV    +       +  AV  GGV ++ + + + 
Sbjct: 68  HPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMNPQIQAVA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D    K +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPAKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  IT LA    ++  R+ +   N     I+ R   VA S +   + +++   
Sbjct: 188 LLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRALLAHLITQG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +  + R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R 
Sbjct: 308 IAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKGIERM 367

Query: 363 ANVSV------------VWEPAPSVEAIR-------ERDAQRILQDPLFLDSIQGDEKKM 403
               +            +    P V   R       ER A+     P    + Q +  + 
Sbjct: 368 TKQRIPDGDLQGFDASSIEAEKPEVREPRQPRPQRGERKARGERDKPAEKGAEQKERNRR 427

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
                 K   + +A+    + R     P+      L    D F + 
Sbjct: 428 SKSKTRKPARDGVASEAQGVARPPQLPPDRAPDEFLDDEVDNFGNR 473


>gi|148244296|ref|YP_001218990.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326123|dbj|BAF61266.1| ATP-dependent RNA helicase RhlE [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 422

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 115/354 (32%), Positives = 185/354 (52%), Gaps = 2/354 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPILEIL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + ++    L + PTRELA+QV   +        +  +V  GGV ++ + + L +G  
Sbjct: 66  KKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRLCSGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ VV DEAD MLD+GF +DI+ IL   P K++ LMFS
Sbjct: 126 ILVATPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLAK+   + V +++   N     I      V  S +   + ++++ H    
Sbjct: 186 ATFSNKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHLIQEHNWHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +   +  A+    SQ  R+ AL   ++    V +ATD+AAR
Sbjct: 246 VLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           GI++  L  VI+ +L   PE+ +HR GRTGRAG KG ++ ++  +  ++   + 
Sbjct: 306 GIEINQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDVE 359


>gi|57867605|ref|YP_189253.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|293366046|ref|ZP_06612734.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81673916|sp|Q5HME0|Y1688_STAEQ RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SERP1688
 gi|57638263|gb|AAW55051.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|291319769|gb|EFE60127.1| ATP-dependent RNA helicase DeaD [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726161|gb|EGG62633.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU144]
 gi|329734135|gb|EGG70453.1| DEAD-box ATP-dependent RNA helicase CshA [Staphylococcus
           epidermidis VCU045]
          Length = 509

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 230/475 (48%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  
Sbjct: 354 QIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSREN-EPRLQRISSELLKEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ ++R                 F   + 
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNR 467


>gi|297589855|ref|ZP_06948495.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|297576983|gb|EFH95697.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 517

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 232/475 (48%), Gaps = 18/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 12  LQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 72  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 125 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 184

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 185 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 245 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 305 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 364

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +++ +  +S +   K++   LL +++  
Sbjct: 365 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDV 423

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 424 DLVAALL----QELIEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 474


>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 496

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 196/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++++GY   T++Q   +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEIL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +      AL + PTRELA QV   +E       +  AV  GGVS+  +   L+ G  
Sbjct: 66  GKPAQRGQVRALVLTPTRELAAQVADSVETYGHNLPLKSAVVFGGVSIVPQIAALKQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L+ S L+ +VLDEAD MLD+GF  DI  +L   PK+R+ LMFS
Sbjct: 126 ILVATPGRLLDLCNQRALSFSTLEILVLDEADRMLDMGFIRDIRKVLAMLPKQRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  SD+ + ++++++ +  + 
Sbjct: 186 ATFSDDIRELAKGLVNNPVEISVTPRNATANTVTQWVTPVGQSDKTSVLIDLIKDNNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L     +  A+ G  SQ  R+ AL   + G+ +V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++     +    + R     
Sbjct: 306 GIDIDQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHDIERLIGRV 365

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 366 IDRKAIPGHE 375


>gi|73662111|ref|YP_300892.1| ATP-dependent RNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643052|sp|Q49Z29|Y802_STAS1 RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SSP0802
 gi|72494626|dbj|BAE17947.1| putative ATP-dependent RNA helicase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 506

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 237/492 (48%), Gaps = 32/492 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +     + E L   G+   T +Q+  +   L  KDVL  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +           +L +APTRELA+QV   L+       + V    GG+ + R+ 
Sbjct: 61  IEKVADQE-------GVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L  + +  ++LDEADEM+++GF DD++FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI TL + + K  V V   +       I+    +V   ++ +   +
Sbjct: 174 EQRQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTS 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG+KG+++  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++ +     +     P  + +   RE D +  +Q+ +  D+ +   +++   LL +++  
Sbjct: 354 QIEQANKRQMTALRPPHRKEVLKARENDIKGKVQNWMSRDN-EPRLQRIATELLGEYNDV 412

Query: 415 KIAAGFLR------------------IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
            + A  L+                  + R      +          R   + D++  + G
Sbjct: 413 DLIASLLQELVESNDEVDVQLTFEKPLSRGKGRQGKGGPKRGGNHKRGGGKFDNKNRRSG 472

Query: 457 GGSRDNFKGSSW 468
            G  +N K +  
Sbjct: 473 KGGFNNKKKNDR 484


>gi|311693479|gb|ADP96352.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 507

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 135/420 (32%), Positives = 211/420 (50%), Gaps = 11/420 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA+S  GY   + +Q   +   L    +L  AQTG+GKT AF L L S +    
Sbjct: 11  LDPAVLEAVSAVGYETPSPIQAQAIPALLAGNHLLGVAQTGTGKTAAFALPLLSRID--- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
              +  + P  L +APTRELA+QV        +K      +   GG   + + + L+ GA
Sbjct: 68  ---ASVTDPQILVLAPTRELAIQVAEAFTTYASKFRNFHVLPIYGGQDFYPQIKGLRRGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGR+ DH+R   L +  LKA+VLDEADEML +GF DD+E IL  +P+  +  +F
Sbjct: 125 QVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPENCQRALF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A+ Y ++A  V I SE R    I    + V    + +A+  IL      
Sbjct: 185 SATMPPQIKKVAQTYLRNATEVRIESETRTVERISQFVLPVYAERKLDALTRILEVEPID 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+F  T+A  +   + L+     V  LSG+L+Q++R   ++ ++ G+  + IATDVAA
Sbjct: 245 AAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI+ ++  + E  +HR GRTGRAGR+G ++ ++    +     L R  N 
Sbjct: 305 RGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGREGKAILLVTPRERSWLRTLERATNS 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPEKIAAGFL 421
            +     PS   +++   Q+     L     +   K M            D   +A    
Sbjct: 365 PMEAYELPSPVELKKMREQQFESQLLGFAEDKKLAKAMSLLDEIAERNDMDMAMVAGALA 424


>gi|294886917|ref|XP_002771918.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239875718|gb|EER03734.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 521

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 179/376 (47%), Gaps = 9/376 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   L++ G+V  T +Q       +  +D++  A+TGSGKT+AF L    
Sbjct: 117 TFEQAGFPDYILHELAQAGFVAPTPIQIQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIV 176

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ+  E       + +    C GGV    + RD
Sbjct: 177 HINAQ-PYLQRGDGPIVLVMAPTRELAVQIQEECNKFGKSSKIKNTCCYGGVPRGPQARD 235

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I       R
Sbjct: 236 LSEGVEICIATPGRLIDFLESQRTNLRRVTYLVLDEADRMLDMGFEPQIRKITSQIRPDR 295

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVN 237
           + L++SAT    +  LA++  ++               H+   Y  V+     RD     
Sbjct: 296 QTLLWSATWPKEVQGLARDLCREEPVHINVGTLTLKACHNVTQYVDVVQEYEKRDRLKQL 355

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R       ++F  T+      T+ L    +  + + G+  Q+ER   L   + G++ +
Sbjct: 356 LERVMDGSKLLIFTDTKRGADDLTRTLRMDGWPALCIHGDKKQEERDWVLHEFKSGKSPI 415

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+ D+  V++ +     E+ +HR GRTGRAG KG +      +  + A 
Sbjct: 416 MIATDVASRGLDVKDIRHVVNYDFPGQIEDYVHRIGRTGRAGCKGNAYTFFTADKIKMAR 475

Query: 358 ---RLFREANVSVVWE 370
              ++ REAN +V  E
Sbjct: 476 GLVQILREANQTVSPE 491


>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 560

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 212/469 (45%), Gaps = 21/469 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++   +    A+   GY N T VQ   +   L  +D++ +A TG+GKT AF L +
Sbjct: 53  MQNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPI 112

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            STL           AP  L ++PTRELA Q+ +    +  KTG  V    GG     + 
Sbjct: 113 LSTL---PRGKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVFGGTPYGPQI 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +++ G  +++ TPGRL D +    +++  +K++VLDEAD MLD+GF   +  I+D++P 
Sbjct: 170 NEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRMLDMGFLPAVTTIVDATPA 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI  +I     +   D   V IA        ++   + +A   +   +  +
Sbjct: 230 DRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMMPIANFKKPELLQAL 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G+   IVF  T+       + L +  ++  ++  + SQ +R  AL   R GR  + 
Sbjct: 290 LEEKGSDRVIVFARTKNRTEDCAEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSIL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDV ARGID+PD++ VI+ +L   PE+ +HR GRTGRAG +G +V  + +  +R    
Sbjct: 350 VATDVLARGIDVPDVDHVINFDLPDMPEDYVHRIGRTGRAGEQGFAVSFVTRESRRTMSD 409

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    +V      + E            D   L+  +    K       K       A
Sbjct: 410 IEKLIGKNVPLMELETYEL-----------DMTVLEKGKKGAPKKGGYKGNKGSGRPAGA 458

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 R+     E+         R   R D+R  +            +
Sbjct: 459 -----KRSDKRGGEKRDFERRSDSRAEGRSDNRPGRGKRAEGKRSFDGA 502


>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2080]
          Length = 437

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 114/355 (32%), Positives = 190/355 (53%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+   AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  
Sbjct: 66  GQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + P KR+ LMFS
Sbjct: 126 ILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     +      V  + + + +V ++  H  + 
Sbjct: 186 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L  V++ +L    ++ +HR GRTGRAG  G ++ ++  +  +  + + R
Sbjct: 306 GLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIER 360


>gi|218674642|ref|ZP_03524311.1| DEAD/DEAH box helicase domain protein [Rhizobium etli GR56]
          Length = 420

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 195/374 (52%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 61  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A        +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 238 ELVRAQGELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 357

Query: 356 AERLFREANVSVVW 369
            + + +     V W
Sbjct: 358 VDAIEKLIGEKVEW 371


>gi|238920509|ref|YP_002934024.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
 gi|238870078|gb|ACR69789.1| ATP-dependent RNA helicase RhlE [Edwardsiella ictaluri 93-146]
          Length = 440

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ E+GY   T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LCAELLRAVEEQGYREPTPIQQQAIPVVLQRRDLMASAQTGTGKTAGFTLPLLQLLHQNP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  KSGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +   +   V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRP 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAIAGYEPDPSIKA 384


>gi|229178806|ref|ZP_04306167.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
 gi|228604682|gb|EEK62142.1| ATP-dependent RNA helicase [Bacillus cereus 172560W]
          Length = 458

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  I+      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFIMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|209549507|ref|YP_002281424.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535263|gb|ACI55198.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 505

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/374 (34%), Positives = 195/374 (52%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 61  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A        +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 238 ELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGASFTLVTKRDSKF 357

Query: 356 AERLFREANVSVVW 369
            + + +     V W
Sbjct: 358 VDAIEKLIGEKVEW 371


>gi|163735815|ref|ZP_02143244.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
 gi|161390901|gb|EDQ15241.1| putative ATP-dependent RNA helicase, putative [Roseobacter
           litoralis Och 149]
          Length = 433

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 204/370 (55%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P  +   L   G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMNLPPELVARLGRMGLNDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L  + R +P  +   L +APTRELA Q+   L      T V VA+ +GG S++ + 
Sbjct: 61  VAQMLELDGRPAP-KSVRGLVLAPTRELATQISVNLRSFAENTKVKVAMVVGGQSINNQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVRLDETVFLVLDEADQMLDMGFIHDLRKIASVIPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  LA +Y +  +RV ++   +    +      +A S++   ++ +
Sbjct: 180 ERQTMLFSATMPKQMNELANSYLRSPIRVEVSPPGKAADKVTQEVHFIAKSEKSALLIEM 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  +   ++ G  SQ +R  A+   + G  +V 
Sbjct: 240 LDKHREERALVFGRTKHGSEKLMKSLVKAGYAAGSIHGNKSQGQRDRAIAAFKSGEIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAG+ G ++     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNYDLPNVPENYVHRIGRTARAGKDGAAIAFCAPDEMGELKA 359

Query: 359 LFREANVSVV 368
           + +  ++S+ 
Sbjct: 360 IQKTMSISIP 369


>gi|160380700|sp|A6SFW7|DBP2_BOTFB RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 514

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 101 VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 160

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 161 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 219

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL     
Sbjct: 220 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 279

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA +Y  + ++VNI S     N + + I          D+   
Sbjct: 280 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 339

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 340 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 399

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q+
Sbjct: 400 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 459

Query: 355 RAERL---FREANVSV 367
           +A  L     EA   +
Sbjct: 460 QARDLVNVLTEAKQVI 475


>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 562

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 187/371 (50%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY   T +Q   +   ++  D+L +AQTG+GKT  F L L   L    
Sbjct: 11  LSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTLPLLHRLGPAP 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL + PTRELA QV   +            V  GGV ++ +   L+    
Sbjct: 71  THLKGR--PRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAALRKPLD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 129 ILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPAKRQNLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N  +  ++ +  LV    +   + +++       
Sbjct: 189 ATFSDEIKVLADRLLNNPQLVEVARRNTANELVEQKVHLVDRDKKTELLTHLISQGDWHQ 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +    +V +ATD+AAR
Sbjct: 249 VLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVLVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG +G +V ++  +  +  + + +     
Sbjct: 309 GLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKKD 368

Query: 367 VVWEPAPSVEA 377
           +     P  EA
Sbjct: 369 IPQFTVPGYEA 379


>gi|154298956|ref|XP_001549899.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
 gi|150857630|gb|EDN32822.1| p68 RNA helicase [Botryotinia fuckeliana B05.10]
          Length = 473

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 60  VETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 119

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 120 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQI 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D I     N+  +  +VLDEAD MLD+GF   I  IL     
Sbjct: 179 RDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRP 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA +Y  + ++VNI S     N + + I          D+   
Sbjct: 239 DRQTCMWSATWPKEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEFEKRDKMTK 298

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 299 HLEKIMEDKDNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG+KG ++ +   + Q+
Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDNQK 418

Query: 355 RAERL---FREANVSV 367
           +A  L     EA   +
Sbjct: 419 QARDLVNVLTEAKQVI 434


>gi|327284970|ref|XP_003227208.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Anolis
           carolinensis]
          Length = 647

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 92  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 151

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 152 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 210

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 211 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 270

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++  D V++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 271 SATWPKEVRQLAEDFLHDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 330

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 331 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 390

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 391 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 450

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 451 VLEEANQAINPK 462


>gi|209694846|ref|YP_002262774.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008797|emb|CAQ78997.1| putative helicase (DEAD/DEAH box helicase) [Aliivibrio salmonicida
           LFI1238]
          Length = 434

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 199/383 (51%), Gaps = 2/383 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   + +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL 
Sbjct: 6   QGLAPEVVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQRLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +  SA  AL +APTRELA Q+   +      T + V    GG  +  + R L  G
Sbjct: 66  TKKSATRRSA-RALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERALDPG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    ++I++L+ +V DEAD MLD+GF + I  I+       ++++
Sbjct: 125 VDILVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAPQIML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+++  EN   + I +    V    +   +  ++     
Sbjct: 185 FSATSSAQMNKLASDILRKPKRISVDRENMTATTISHVVYPVDEERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVA
Sbjct: 245 QQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG+KG ++  + +  +    ++     
Sbjct: 305 ARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVVQVETLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRI 386
             +     P  E   RE   +++
Sbjct: 365 QRIHRVEQPGYEPKSRESYIEKV 387


>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
 gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
          Length = 508

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 3/379 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L    
Sbjct: 36  LSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILQGSR 95

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA+QV            +  A+ IGG S+  ++  L  G  
Sbjct: 96  AR---ARMPRSLILEPTRELALQVAENFVNYGKHLKLTHALLIGGESMAEQKEVLNRGVD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D     GL ++  K +V+DEAD MLD+GF  DIE I+      R+ L FS
Sbjct: 153 VLIATPGRLIDLFERGGLLLTQTKLLVIDEADRMLDMGFIPDIEKIVSMLSPLRQTLFFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P I  LA  + ++   + ++  +   S I+    +V   D+  A+  +LR    +N
Sbjct: 213 ATMAPEIRRLADAFLRNPKEITVSRPSSVASTIETGLAIVDAKDKRRALRKLLREADMQN 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC+ +  V    K L +H F   AL G+L+Q  R + L+  + G  ++ + +D+AAR
Sbjct: 273 AIVFCNRKRDVDVLCKSLIKHGFSAGALHGDLAQSVRFSTLEAFKSGELKILVCSDIAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + +L  + E+ +HR GRTGRAGR G +  +   + +  A+ + +     
Sbjct: 333 GIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRTGHAYSLATPDEEALAQAIEKLTGKP 392

Query: 367 VVWEPAPSVEAIRERDAQR 385
           +       V+ ++  D  R
Sbjct: 393 IPRIEVKGVDNLQWSDEPR 411


>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
 gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
          Length = 441

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 193/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I    PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +        EA
Sbjct: 359 EHLIGHLLPRAELEGFEA 376


>gi|114682557|ref|XP_001166433.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 4 [Pan
           troglodytes]
          Length = 807

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 205/458 (44%), Gaps = 23/458 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 400

Query: 185 FSATISPAITTLAKNYQKD--------------AVRVNIASENRQHSDIDYRAVLVALSD 230
           FSAT++                               +             R       D
Sbjct: 401 FSATMTDERAEETWLCAWQVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGD 460

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R+  +  +L      + ++F  T+    R   +L     QV  L G LSQ +R  AL+  
Sbjct: 461 REAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRF 520

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +D +  + +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +
Sbjct: 521 KDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGE 580

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + ++  + + + A   V     P    ++ RD  +++ +D   +  ++ +EK+M      
Sbjct: 581 DERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQ 640

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
            +     A   L   +  +    E +       R + +
Sbjct: 641 INT----AKRLLEKGKEAVVQEPERSWFQTKEERKKEK 674


>gi|194226836|ref|XP_001916530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Equus
           caballus]
          Length = 791

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 239 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 298

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 299 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 357

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 358 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 417

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 418 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 477

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 478 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 537

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 538 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 597

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 598 VLEEANQAINPK 609


>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2083]
 gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 495

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 223/467 (47%), Gaps = 19/467 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ + GY + T +QE  + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRE 117
            + L       + A  P +L + PTRELA QV    +           A+ IGGVS   +
Sbjct: 61  ITML---GKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G  +++ TPGRL DH+    L ++ ++ +V+DEAD MLD+GF  DIE I   +P
Sbjct: 118 DRLIDKGVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRMLDMGFIPDIERIFGLTP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---- 233
             R+ L FSAT++P I  +   +  +  RV +A +     +I+   ++   S +D     
Sbjct: 178 FTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGTE 237

Query: 234 -----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                  +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L 
Sbjct: 238 KRKALRKLIDAEGDACTNAIIFCNRKMDVDVVAKSLKKYGYDAAPIHGDLDQSQRTKTLD 297

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV- 347
             R+G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G +V + 
Sbjct: 298 GFREGGLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAVMIC 357

Query: 348 IPQNMQRR--AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +P++ +     E+L ++    +   P    +A    +A+     P   D  +    +  +
Sbjct: 358 VPRDEKNFDAIEKLIQKQITRIDN-PLKPADAPAPSEARADGASPAREDKPKRTRARSRN 416

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
                    ++ A    +      A  E  P +           SR+
Sbjct: 417 KPKDDSPKTEVQADAPVVAAEVEPAKAEPKPEAPKQAPRENNTLSRS 463


>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 461

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 199/380 (52%), Gaps = 8/380 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q + +AL  +GY   T +Q   + P L  +D+L  AQTG+GKT AF L  
Sbjct: 1   MTKFTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E +  +P  +   L +APTRELA Q+ +  +   A  G+ V   +GG SV+++R
Sbjct: 61  IDRL-REAENQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDR 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D I  +   +  ++ +VLDEAD+MLDLGF   +  I + +PK
Sbjct: 120 NKLHRGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQMLDLGFIHALRKINELTPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+  AI  L   Y ++  +V++  E+     I+    +V   ++ + +  I
Sbjct: 180 TRQTLFFSATMPKAIKDLVSQYCRNPAQVSVTPESTTAERIEQFLFMVQQDEKQSLLELI 239

Query: 239 LRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           L          +  +VF  T+    R  K LA+      A+ G  SQ +R  AL   +  
Sbjct: 240 LSGRHEIPGKLERVLVFARTKHGCDRVVKKLAQVGIPANAIHGNKSQPQRERALDEFKRA 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +ATDVAARGID+P +  VI+ EL + PE  +HR GRT RAG  G+++    ++ +
Sbjct: 300 KTPVLVATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDER 359

Query: 354 RRAERLFREANVSVVWEPAP 373
           +  + + +  +      P P
Sbjct: 360 QYLKDIRKTTDAEFERLPLP 379


>gi|163738820|ref|ZP_02146234.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
 gi|163741469|ref|ZP_02148860.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161385203|gb|EDQ09581.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
 gi|161388148|gb|EDQ12503.1| ATP-dependent RNA helicase, putative [Phaeobacter gallaeciensis
           BS107]
          Length = 516

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 192/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 TLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---------LS 229
            R+ L FSAT++P I  +   +     RV +A +     +I    VL             
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEK 237

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +    +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+ 
Sbjct: 238 RKLLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FREGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
              ++  E + R     +     P
Sbjct: 358 PKDEKNLEDIERLVQNEIPRIENP 381


>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
          Length = 446

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 114/355 (32%), Positives = 190/355 (53%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+   AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  
Sbjct: 66  GQSAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + P KR+ LMFS
Sbjct: 126 ILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     +      V  + + + +V ++  H  + 
Sbjct: 186 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L  V++ +L    ++ +HR GRTGRAG  G ++ ++  +  +  + + R
Sbjct: 306 GLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIER 360


>gi|242080401|ref|XP_002444969.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
 gi|241941319|gb|EES14464.1| hypothetical protein SORBIDRAFT_07g002100 [Sorghum bicolor]
          Length = 946

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 214/466 (45%), Gaps = 11/466 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +    + +    +
Sbjct: 376 LLDTIKKLGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFLLPML-RHVKDQPPVA 434

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P   P+ L +APTREL VQ+  +++      G+      GG  V ++  +L+ GA IVV 
Sbjct: 435 PGDGPVGLIVAPTRELVVQIYLDIKKFSKVLGISCVAVYGGSGVAQQISELKRGAEIVVC 494

Query: 131 TPGRLCDHIRGKGLNISH---LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +      I++   +  +V+DEAD M D+GF   I  I+ +  + R+ ++FSA
Sbjct: 495 TPGRMIDILCTSNGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRRDRQTVLFSA 554

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  LA+      V + +   +  + DI     +   S+R   ++ +L     K  
Sbjct: 555 TFPRQVEMLARKVLIKPVEIQVGGRSVVNKDITQVVEVRPESERFLRLLELLGKWCDKGK 614

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  T+       K L +H +Q ++L G   Q +R + +   +     + IAT VAAR
Sbjct: 615 ILVFVHTQDKCDSLLKNLFQHGYQCLSLHGGKDQADRESTVADFKSNICSLLIATSVAAR 674

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R A  L +   +S
Sbjct: 675 GLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGSAVTFISEEEERYAPDLVKALELS 734

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
               P   ++A+ +R   ++ Q                      ++ E  A  F +  +A
Sbjct: 735 EQTVPD-DLKALADRFMAKVKQGTERTHGTG-----YGGSGFKFNEEEDEARKFTKKAQA 788

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
                EE    S     +  +          G       +   +L 
Sbjct: 789 MEYGYEEEKSDSDFDEEEVHKAGDDLDVQAVGEPSTNDEARLHALE 834


>gi|194752113|ref|XP_001958367.1| GF10884 [Drosophila ananassae]
 gi|190625649|gb|EDV41173.1| GF10884 [Drosophila ananassae]
          Length = 822

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 192/376 (51%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       +  +D++  AQTGSGKT+A+ L     
Sbjct: 153 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVH 212

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 213 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 271

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 272 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 331

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   +    + V V        +   ++ 
Sbjct: 332 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLVKLLT 391

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 392 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 451

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+  +G +  +   +   +A 
Sbjct: 452 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNRGTAYTLFTHSNANKAN 511

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 512 DLIQVLREANQTINPK 527


>gi|224068070|ref|XP_002188600.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Taeniopygia
           guttata]
          Length = 1031

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 136/560 (24%), Positives = 259/560 (46%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T   A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GNPIP-PDLEKLWADFKDQQKAEGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD-----DSRAFKVGGGSRDNFKGSSW--FSLS 472
                        +    S+ + + R +D      S A     G+ +  + +      ++
Sbjct: 801 LQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTSNAPTPSAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                 AEA+ +M     ++ +   +I A    P ++   ++    + +   +    ++K
Sbjct: 861 AQKNLGAEAQDVMQQ-ATNAILRGGTIQA----PTVSAKTIAEQLAEKINAKLNYVPIEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + K  GG+   F+ Y+  
Sbjct: 916 QEEEKQDGGQNESFKRYEEE 935


>gi|254461770|ref|ZP_05075186.1| ATP-dependent RNA helicase DeaD [Rhodobacterales bacterium
           HTCC2083]
 gi|206678359|gb|EDZ42846.1| ATP-dependent RNA helicase DeaD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 450

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 195/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   L E G    T +Q   +   L   DVL  AQTG+GKT AFGL L
Sbjct: 4   LSEFETMGLSERLVARLKELGLTTPTPIQARAIPEALNGHDVLGLAQTGTGKTAAFGLPL 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R SP +   AL +APTRELA Q+   L+     T + VA+ +GG S++ + 
Sbjct: 64  ITLLSENPGRPSPKT-VRALILAPTRELAGQIVENLKDYTKGTPIKVALVVGGQSINVQS 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+V TPGRL D +  + L +     +VLDEAD+MLD+GF   +  I    P+
Sbjct: 123 KRLEKGIDILVATPGRLIDLMDRRALTLKESHFLVLDEADQMLDMGFIHALRQIAAVLPE 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A  Y K   R+ ++   +    +      +A +++ + ++ +
Sbjct: 183 QRQTMLFSATMPKLMNEIANTYLKSPKRIQVSPPGKAADKVTQVVHFIAKTEKQSLLIEL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L    F   ++ G  SQ +R  AL   + G  +V 
Sbjct: 243 LGAHKDERALVFGRTKHGCEKLMKQLVARGFAATSIHGNKSQGQRERALAAFKAGEMKVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD+  V + EL + P+  +HR GRT RAG+ G ++     +     + 
Sbjct: 303 VATDVAARGLDIPDVRHVYNYELPNVPDAYVHRIGRTARAGKDGAAIAFCAPDEMDLLKD 362

Query: 359 LFREANVSVV 368
           + +   +S+ 
Sbjct: 363 IEKTMKISIP 372


>gi|168000743|ref|XP_001753075.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695774|gb|EDQ82116.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 793

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 156/558 (27%), Positives = 254/558 (45%), Gaps = 40/558 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  + +AL++RG   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ + + ++ EN
Sbjct: 144 IPDAVADALAKRGITQLFPIQRAVLEPAMQGRDLIGRAKTGTGKTLAFGIPIINNIIREN 203

Query: 67  DR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +          AP AL +APTRELA QV RE          +     GGV++  ++R L 
Sbjct: 204 EENRVARRSGRAPRALVLAPTRELAKQVEREFMESAPMLSTIC--VYGGVAISSQQRLLT 261

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I VGTPGR+ D I    L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+ 
Sbjct: 262 RGVDIAVGTPGRIIDLINRGSLRLQEVRFLVLDEADQMLAVGFEEDVEQILEQMPNQRQS 321

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  L++ Y  DA+ ++    + E        Y    V  + R      I 
Sbjct: 322 MLFSATMPTWVKKLSRKYLHDALTIDLVGESDEKLADRIKLYAVATVPQAKRSILNDLIA 381

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      IVF  T+         +A  L    AL G++SQ +R   L   R+G   V +
Sbjct: 382 VYGKGGKTIVFTQTKRDADDVATAMARTLGC-EALHGDISQSQREKTLNAFREGNFSVLV 440

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LVIH E+ ++PE  +HRSGRTGRAG+ G ++ +      R    +
Sbjct: 441 ATDVAARGLDIPNVDLVIHYEIPNDPETFVHRSGRTGRAGKDGTAILMYSDRQTRTMRLI 500

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R+         AP VE + +   +         D I+    ++ +V +        A  
Sbjct: 501 ERDVGCKFTKISAPRVEDVLKASTESA------TDVIKRVHPEVAEVFMPT------AEE 548

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK- 478
            L+       A                               + +G +   L      + 
Sbjct: 549 LLKEQGPHAFAAALAHLAGFTQ-----------LPTSRSLLTHEEGVTTLRLVRPRGSRP 597

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGV-DLLRRTVKLDKGIQL 533
              R +M +L          +G I++  D        ++  D   +LL +  +  + I +
Sbjct: 598 MTPRVVMGVLSDIWPTAVDKVGKIKIVDDQKADGAVFDLPEDVAKELLSKPTRSGEVIDV 657

Query: 534 -KYLGGEKPDFRGYKSSG 550
            + L   + D  G    G
Sbjct: 658 CQSLPRLEEDEFGAGRGG 675


>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
          Length = 399

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 201/371 (54%), Gaps = 6/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I ++++  G+   T +QE  +   L  KD++  AQTG+GKT AFGL +   +  ++
Sbjct: 11  LDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL IAPTRELA+QV  EL  L     V V    GG  + R+ R L+    
Sbjct: 71  NNV------QALIIAPTRELAIQVSEELYKLSYDKHVRVLAVYGGSDISRQIRSLKKNPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L + H++ +VLDEADEML++GF DDIE IL   P +R+ L+FS
Sbjct: 125 IVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMGFIDDIETILKEVPAERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  + + +      + I ++      I+   V V   ++ + +  +L     + 
Sbjct: 185 ATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHEKEKFDVLSRLLDVQAPEL 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V   ++ L    +    + G+L+Q +R + L+  ++G+  V +ATDVAAR
Sbjct: 245 AIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQAKRMSVLRKFKEGKIDVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  +PE+ +HR GRTGRAG++GM++  +          +       
Sbjct: 305 GLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKEGMAITFVQPREMGYLRIVEETTKKR 364

Query: 367 VVWEPAPSVEA 377
           +    AP+ + 
Sbjct: 365 MQPLQAPTWDE 375


>gi|253990397|ref|YP_003041753.1| ATP-dependent RNA helicase RhlE [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781847|emb|CAQ85010.1| putative atp-dependent rna helicase rhle [Photorhabdus asymbiotica]
          Length = 444

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 195/383 (50%), Gaps = 8/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+ E+GY   T +Q+  +   L  KD+L SAQTG+GKT  F L +  
Sbjct: 2   SFESLGLDADILCAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +        AL + PTRELA QVG  +        +   V  GGVS++ +   
Sbjct: 62  LLNNSPVQTKGRRPVRALILTPTRELAAQVGENVRNYSKYLRLRSLVVFGGVSINPQMMK 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L+  P KR
Sbjct: 122 LRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRMLDMGFIHDIRRVLNKLPPKR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     + V V +A  N     I+     V    +   +  ++ 
Sbjct: 182 QNLLFSATFSDEIKNLASKLLHNPVSVEVARRNSASEQIEQFVHFVDKKRKGELLSFLIG 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   ++GR RV +A
Sbjct: 242 SRNWQQVLVFTRTKHGANRLAEQLNKDGVTASAIHGNKSQGARTRALADFKEGRIRVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +  + + 
Sbjct: 302 TDIAARGLDIDQLPYVVNFELPNVSEDYVHRIGRTGRADATGQALSLVCVDEHKLLKDIE 361

Query: 361 REANVSVV------WEPAPSVEA 377
           R     +       ++P P+++A
Sbjct: 362 RLLKREIPRVAIPGYDPDPTIKA 384


>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 492

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 197/381 (51%), Gaps = 8/381 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +   Q + +AL  +GY   T +Q   + P L  +D+L  AQTG+GKT AF L  
Sbjct: 3   ITTFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPS 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E D  +P  +   L +APTRELA Q+ +  +   A  G+ V   +GG SV ++R
Sbjct: 63  IDRL-READNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDR 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D I  K   ++ ++ +VLDEAD+MLDLGF   +  I D  P 
Sbjct: 122 NKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPA 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  L   Y ++ V+V++         ID    +V   ++   I  I
Sbjct: 182 ERQTLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQALIEMI 241

Query: 239 LRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           L+   A     +  +VF  T+    R  K L +   +  A+ G  SQ +R  AL   +  
Sbjct: 242 LKGRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRA 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + IATDVAARGID+P +  VI+ EL + PE  +HR GRT RAG+ G+++    ++ +
Sbjct: 302 KTPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDER 361

Query: 354 RRAERLFREANVSVVWEPAPS 374
              + + +  +      P P 
Sbjct: 362 AYLKDIQKNTDAEFDRLPLPE 382


>gi|212543663|ref|XP_002151986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
 gi|210066893|gb|EEA20986.1| RNA helicase (Dbp), putative [Penicillium marneffei ATCC 18224]
          Length = 554

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 124 VESFDEAGFPNYVLSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 184 IVHINAQ-PLLSPGDGPIVLILAPTRELAVQIQTEISKFGRSSRIRNTCVYGGVPKGPQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 303 DRQTCMWSATWPKEVRQLASDFLNDFIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 362

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   LQ  ++G+
Sbjct: 363 HLEKIMEDRKNKCLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLQEFKNGK 422

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  VI+ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 482

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 483 QARDLVTILSEAKQQI 498


>gi|27468597|ref|NP_765234.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|81843521|sp|Q8CRP6|Y1679_STAES RecName: Full=Probable DEAD-box ATP-dependent RNA helicase SE_1679
 gi|27316144|gb|AAO05278.1|AE016749_224 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
          Length = 509

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 230/475 (48%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  
Sbjct: 354 QIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSREN-EPRLQRISSELLKEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ ++R                 F   + 
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRSSKGGSRRSNHKRGNGKFDNKNR 467


>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
          Length = 744

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 193/373 (51%), Gaps = 10/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I E L  +G+   T++Q   +   L  +D++  AQTGSGKT+A+ +     
Sbjct: 120 FEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSLVH 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + +       P+AL +APTRELA Q+ +      ++         GG     + RDL
Sbjct: 180 IQHQ-ESIRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDL 238

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 239 ERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 298

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
           +LM+SAT    +  LA+ +  D +++NI S N   +    + V V        +   ++ 
Sbjct: 299 VLMWSATWPKEVRQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 358

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+++  + ++ VA+ G+ SQQER   L   R+GR  +
Sbjct: 359 EISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSAFRNGRQGI 418

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 419 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 478

Query: 358 RL---FREANVSV 367
            L    REAN  +
Sbjct: 479 DLINVLREANQVI 491


>gi|226942516|ref|YP_002797589.1| DEAD box family ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226717443|gb|ACO76614.1| ATP-dependent RNA helicase, DEAD box family [Azotobacter vinelandii
           DJ]
          Length = 557

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 190/368 (51%), Gaps = 6/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPGG 67

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +  R  P  A   L + PTRELA QV    +       +V A   GGV ++ + + L
Sbjct: 68  HPDKEHRHGPRQA-RVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMNPQVQAL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  ++V  PGRL D +    +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+
Sbjct: 127 SRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  I  L      D  R+ +   N     I+ R   +    +   + +++  
Sbjct: 187 NLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALLAHLVTQ 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   + G  R+ +AT
Sbjct: 247 GAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTIRILVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + R
Sbjct: 307 DIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIER 366

Query: 362 EANVSVVW 369
               S+  
Sbjct: 367 MTRQSIPE 374


>gi|319399568|gb|EFV87823.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 509

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 230/475 (48%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 114 KALKKGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 EQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  
Sbjct: 354 QIEDVNNRRMKALRPPHRKEVLKAREDDIKERVQNWMSREN-EPRLQRISSELLKEYDST 412

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ ++R                 F   + 
Sbjct: 413 ELVASLLQELVEANDEVEVQLTFEKPLARKNRSSKGGFRRSNHKRGNGKFDNKNR 467


>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 441

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 180/387 (46%), Gaps = 4/387 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL + GY   T +Q   + P +  +DVL SA TG+GKT A+ L +   L+  
Sbjct: 10  DLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +     A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARAFAAHTHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      +  +R+      +    A   +    +   +     
Sbjct: 188 SATLEGDAIKDFAERLLNEPVEIESDPSRRERKKILQWYYRADDLKHKTALLCHQLKQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F   R  V      L E       L GE+ Q +R+ A++ + DGR  V +ATD+
Sbjct: 248 VTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  V + +L    +  LHR GRTGRAGRKG ++  +  +      ++ R  
Sbjct: 308 AARGIDIDDVSHVFNFDLPRTADTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKISRYL 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
           N  +       +  + +  + +    P
Sbjct: 368 NEPLKPRVIEELRPVTKAPSAKTTGKP 394


>gi|54302687|ref|YP_132680.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 431

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/391 (29%), Positives = 200/391 (51%), Gaps = 7/391 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I  AL+E GY  LT +Q   +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  +        AL +APTRELA Q+ + +      T +  A   GG  +  + R L+ G
Sbjct: 65  EKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTLEKG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+  K +++++++ +V DEAD MLD+GF  D+  ++       +++M
Sbjct: 125 VDILVATPGRLIEHVDLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+ +  EN     + +    V    +   +  ++     
Sbjct: 185 FSATSSKQMNALASDILRKPKRIMVDRENTTADTVSHVVYPVDQERKRELLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L +   + V   G+ +Q  R  AL   ++G+ARV +AT+VA
Sbjct: 245 KQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ ++    E+ +HR GRTGRAG KG ++  + +  +    ++ +   
Sbjct: 305 ARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLVQVEQLIG 364

Query: 365 VSVV------WEPAPSVEAIRERDAQRILQD 389
             +       +EPA     +++ + +   +D
Sbjct: 365 QRIHRVQLLGYEPANRDAFVQKMNTKAAFKD 395


>gi|253733085|ref|ZP_04867250.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253728993|gb|EES97722.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 517

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 225/474 (47%), Gaps = 16/474 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +       ++L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 12  LQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L       GV V    GG+ + R+ 
Sbjct: 72  IEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQI 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 125 KALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 184

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 185 VQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 245 FLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 305 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 364

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEK 415
           ++       +     P  + + +     I +          +   K++   LL +++   
Sbjct: 365 QIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKKSESRLKRISTELLNEYNDVD 424

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           + A  L      L    +   V L   +   R        G  +R++ +G+  F
Sbjct: 425 LVAALL----QELVEANDEVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 474


>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
 gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
           HTCC2150]
          Length = 574

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/430 (30%), Positives = 210/430 (48%), Gaps = 23/430 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + +A++E GY + T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L   +   + A  P +L +APTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 61  ISLL---SKGRARARMPRSLVLAPTRELAAQVAENFDAYSKYSKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH+    L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFKLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +    V+V +A        I    +      R+    + 
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPVKVEVARAATTSETITQGLIWHEPKRREFGAKDK 237

Query: 239 LRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                           NAI+FC+ +  V    K L +H +    + G+L Q  R   L  
Sbjct: 238 RNILRATIEAEGEKCTNAIIFCNRKVEVDIVAKSLKKHGYNAEPIHGDLDQSHRMKVLNG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G  R   A+DVAARG+D+P++  V + ++  + E+ +HR GRTGRAGR G +  +  
Sbjct: 298 FREGEIRFLCASDVAARGLDIPNVSHVFNFDVPGHAEDYVHRIGRTGRAGRTGTAFTIAT 357

Query: 350 QNMQRRA---ERLFREA--NVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKM 403
            N  ++    E L + A   V   W P    +A  E+   +R  ++P      + D K  
Sbjct: 358 PNDAKQLAAVEELVKMAIPRVENPWSPPTGGKAKDEKPREERKKREP---RKTREDHKSK 414

Query: 404 VDVLLAKHDP 413
            +    ++ P
Sbjct: 415 SEDTPTENTP 424


>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 532

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 117/362 (32%), Positives = 189/362 (52%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L  + 
Sbjct: 14  LSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTLPILHLLSQKP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTRELA Q+   ++       +   V  GGV+ + +   L+    
Sbjct: 74  LSEVVKGRPRCLMLTPTRELAAQIEESVKVYGKFLPLTSTVIFGGVNANPQIARLKKPLD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FS
Sbjct: 134 ILVATPGRLLDHANQKNVDLSGIEILVLDEADRMLDMGFIRDIKKILAMLPKQRQNLLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     ++    +VA   +   + ++++ +  + 
Sbjct: 194 ATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHMVAQGHKRELMSHLIQQNDWQQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L +   Q  A+ G  SQ  R+ AL   +DG  RV +ATD+AAR
Sbjct: 254 VLIFTRTKHGANRLAEKLVKDGIQSAAIHGNKSQSARTKALAQFKDGTMRVLVATDIAAR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++ +   +  + + +     
Sbjct: 314 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGAAVSLVDREELKLLKDIEKLIKRE 373

Query: 367 VV 368
           + 
Sbjct: 374 IP 375


>gi|224538852|ref|ZP_03679391.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519527|gb|EEF88632.1| hypothetical protein BACCELL_03748 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 478

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/473 (27%), Positives = 209/473 (44%), Gaps = 9/473 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  NI + +  AL E+ Y   T +QE  +   L  +D+L  AQTG+GKT AF + +
Sbjct: 1   MMTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAIPI 60

Query: 59  ASTLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LLA+             AL + PTRELA+Q+   L      T +   V  GGV    
Sbjct: 61  IEQLLADPISQQKGAPRKIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKS 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L+ G  I+  TPGRL D +    + + H++  VLDEAD MLD+GF  D++ +L   
Sbjct: 121 QTDELRAGTDILTATPGRLLDLMSQGFIRLDHVRHFVLDEADRMLDMGFIHDVKRLLPKL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P K++ L FSAT+  +I  LAK+  ++  RV +   +     I      V    +   + 
Sbjct: 181 PPKKQTLFFSATMPDSIDRLAKSLLRNPARVEVTPASSVVEIISQSVYRVEKPQKKELLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        +VF  T+       + L+       ++ G+ SQ  R  AL   ++GR+ 
Sbjct: 241 QLLLGEAGHQVLVFSRTKHGADNIARYLSRRGITCESIHGDKSQNSRQRALSNFKEGRSN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARGID+  L+LV++ +L   PE  +HR GRTGRAG +G ++           
Sbjct: 301 VIIATDIAARGIDIKGLDLVLNYDLPDVPETYVHRIGRTGRAGCEGRAIAFCSGEEVPML 360

Query: 357 ERLFREANVSVVWEP--APSVEAIRER---DAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             + +   + +       P +E  +     +  R +Q     D  QG +           
Sbjct: 361 REIEKLTGIKLEQRKHDLPPLEETKTAPVVNVARKVQAKAPADKQQGKQNNKRREGRKPA 420

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +P K A     +            P      + +   D R       ++   +
Sbjct: 421 EPLKNAQQATVVAEKPKRHNRPAKPKLARESQQKQSADKREQASSRSAKLRSR 473


>gi|153950343|ref|YP_001400107.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|170023425|ref|YP_001719930.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis YPIII]
 gi|152961838|gb|ABS49299.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           31758]
 gi|169749959|gb|ACA67477.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 441

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 199/418 (47%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      A  +R+      +    A   +    +         
Sbjct: 188 SATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRADDIKHKTALLCHLLKQPD 247

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+F  TR  V      L E       L GE+ Q +R+ A+  + DGR  V +ATD+
Sbjct: 248 VSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++  +      ++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHDHILLGKIGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKI 416
           N      V+ E  P+ +A  E+   +  +  L     Q +  K+ V V +   D + +
Sbjct: 368 NEPLKPRVIDELRPTSKAPSEKATGKPSKKVLAKRKEQKEASKEKVKVKVRHRDAKNV 425


>gi|218231258|ref|YP_002367146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228939601|ref|ZP_04102185.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972459|ref|ZP_04133068.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979080|ref|ZP_04139429.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|218159215|gb|ACK59207.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228780666|gb|EEM28884.1| ATP-dependent RNA helicase [Bacillus thuringiensis Bt407]
 gi|228787281|gb|EEM35251.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228820093|gb|EEM66134.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 458

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 188/367 (51%), Gaps = 7/367 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT AF L +
Sbjct: 7   LSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P  +   L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 67  LHRLLQNRIKPQP-KSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R + +G  ++V TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P 
Sbjct: 126 RAVMHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPA 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA    +D  RV +   +     I  R + V  + +   +  +
Sbjct: 186 KRQTLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFLAQL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A++F  T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAGEIRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G ++ ++    +    R
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEEMAYLR 365

Query: 355 RAERLFR 361
             E+L R
Sbjct: 366 DIEKLIR 372


>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 480

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 201/384 (52%), Gaps = 8/384 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + + +A+ ++GY+  + +QE  +   L + DVL  AQTG+GKT  F L L 
Sbjct: 1   MTFKELGLIEPLLKAIKDKGYIKPSPIQEQAIPIILEKHDVLAGAQTGTGKTAGFTLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L++ +  +      AL + PTRELA QV + ++       +  AV  GGV ++ ++ 
Sbjct: 61  Q-ILSKKESNNTKPEIRALILTPTRELAAQVAQSVDDYGKYLPLKTAVIFGGVGINPQKA 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  IV+ TPGRL DHI  K ++ISH++  +LDEAD MLD+GF  DI  +L   P  
Sbjct: 120 LIRKGVDIVIATPGRLLDHIEQKTIDISHVEHFILDEADRMLDMGFIRDIRKVLALLPSH 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  L+         + +A  N     +     LV    +   +  ++
Sbjct: 180 RQNLLFSATFSDEIKKLSDGILNKPKLIEVARRNTSSEMVSQVIHLVDKDRKKTLLSKLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   + G  RV +
Sbjct: 240 KEGDWRQVLVFTRTKHGANKLSQQLEIDGITATAIHGNKSQGARTKALADFKAGAVRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG +G +V ++  +     + +
Sbjct: 300 ATDIAARGIDIDQLPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHDYLKGI 359

Query: 360 FREANVSVV------WEPAPSVEA 377
            +    S+       +E  PS++A
Sbjct: 360 EKLIKTSIKKVLIEGFEVDPSIKA 383


>gi|22125187|ref|NP_668610.1| ATP-dependent RNA helicase SrmB [Yersinia pestis KIM 10]
 gi|45442294|ref|NP_993833.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597216|ref|YP_071407.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis IP
           32953]
 gi|108808436|ref|YP_652352.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Antiqua]
 gi|108811359|ref|YP_647126.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Nepal516]
 gi|145598847|ref|YP_001162923.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Pestoides F]
 gi|149365400|ref|ZP_01887435.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162420447|ref|YP_001607925.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165925272|ref|ZP_02221104.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165937169|ref|ZP_02225734.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008251|ref|ZP_02229149.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212404|ref|ZP_02238439.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399586|ref|ZP_02305110.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421460|ref|ZP_02313213.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423084|ref|ZP_02314837.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167470537|ref|ZP_02335241.1| ATP-dependent RNA helicase SrmB [Yersinia pestis FV-1]
 gi|186896313|ref|YP_001873425.1| ATP-dependent RNA helicase SrmB [Yersinia pseudotuberculosis PB1/+]
 gi|218929780|ref|YP_002347655.1| ATP-dependent RNA helicase SrmB [Yersinia pestis CO92]
 gi|229838271|ref|ZP_04458430.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895533|ref|ZP_04510704.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229898835|ref|ZP_04513980.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901609|ref|ZP_04516731.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270489798|ref|ZP_06206872.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504499|ref|YP_003568561.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21958051|gb|AAM84861.1|AE013731_6 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45437158|gb|AAS62710.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590498|emb|CAH22138.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108775007|gb|ABG17526.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108780349|gb|ABG14407.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115348391|emb|CAL21327.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210543|gb|ABP39950.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149291813|gb|EDM41887.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162353262|gb|ABX87210.1| ATP-dependent RNA helicase SrmB [Yersinia pestis Angola]
 gi|165915032|gb|EDR33644.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922879|gb|EDR40030.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992633|gb|EDR44934.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206335|gb|EDR50815.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960949|gb|EDR56970.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167052090|gb|EDR63498.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057254|gb|EDR67000.1| ATP-dependent RNA helicase SrmB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699339|gb|ACC89968.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681538|gb|EEO77632.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688383|gb|EEO80454.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694637|gb|EEO84684.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701339|gb|EEO89367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262362509|gb|ACY59230.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366486|gb|ACY63043.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270338302|gb|EFA49079.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354958|gb|ADE65299.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320016083|gb|ADV99654.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 441

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 199/418 (47%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKYTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      A  +R+      +    A   +    +         
Sbjct: 188 SATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRADDIKHKTALLCHLLKQPD 247

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+F  TR  V      L E       L GE+ Q +R+ A+  + DGR  V +ATD+
Sbjct: 248 VSKSIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + ++    +  LHR GRTGRAGRKG+++ ++  +      ++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAISLVEAHDHILLGKIGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKI 416
           N      V+ E  P+ +A  E+   +  +  L     Q +  K+ V V +   D + +
Sbjct: 368 NEPLKPRVIDELRPTSKAPSEKATGKPSKKVLAKRKEQKESSKEKVKVKVRHRDAKNV 425


>gi|326928709|ref|XP_003210518.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Meleagris gallopavo]
          Length = 1027

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/559 (23%), Positives = 251/559 (44%), Gaps = 26/559 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 379 ILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LE 437

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 438 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 497

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 498 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 557

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T   A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K +
Sbjct: 558 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGS 617

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 618 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 677

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 678 GLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELS 737

Query: 367 VVWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               PA         +  ++ + + I +   F       ++    +   +   +K A G 
Sbjct: 738 GNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALGL 797

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLSV 473
                       +    S+ + + R +D          +                  ++ 
Sbjct: 798 QDSDDEDTAVDIDEQIESMFNSKKRVKDMGTPGSSNTPTPSAGNAEKLEIAKRLALRINA 857

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKG 530
                AEA+ +M     ++ +   +I A    P ++   ++    + +   +    ++K 
Sbjct: 858 QKNLGAEAQDVMQQ-ATNAILRGGTIQA----PTVSAKTIAEQLAEKINAKLNYVPIEKQ 912

Query: 531 IQLKYLGGEKPDFRGYKSS 549
            + K  GG+   F+ Y+  
Sbjct: 913 EEEKQDGGQNESFKRYEEE 931


>gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 539

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 191/358 (53%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 66  GQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 126 VLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    +   +  +++ H  + 
Sbjct: 186 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLIN 363


>gi|224078085|ref|XP_002191498.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Taeniopygia
           guttata]
          Length = 770

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 221/451 (49%), Gaps = 18/451 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 185 NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIYK 244

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 245 -----PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLDVKTQEAALRS 299

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 300 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQT 359

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNIL 239
           ++FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L
Sbjct: 360 MLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVTALL 419

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D +  + +
Sbjct: 420 TRTFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILV 479

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAG+ G SV ++ +  ++  + +
Sbjct: 480 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEI 539

Query: 360 FREANVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A   V     P    ++ R   + + +D   +  ++ +E++M      +    +I  
Sbjct: 540 VKTAKTPVKARILPQDVILKFREKIENLEKDIYAVLCLEREEREM------QQSEAQINK 593

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
              ++      A  E    S    R+  + +
Sbjct: 594 AKKQLETGKKEAGSESLERSWFQTREERKKE 624


>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 550

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 191/358 (53%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   L    
Sbjct: 19  LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELL--SK 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 77  GQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 137 VLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    +   +  +++ H  + 
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQHDWQQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 257 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLIN 374


>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
 gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
          Length = 444

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 198/386 (51%), Gaps = 3/386 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++     +  A+ ++GY   T +Q+  +   L+  D+L  AQTG+GKT  F L L  
Sbjct: 2   LFKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L ++       S P  L + PTRELA QV   +           AV  GGVS++ +++ 
Sbjct: 62  RLQSKYQDVQ-KSFPKVLVLTPTRELAAQVHESVRDYGRYLPFRSAVIFGGVSINPQKQK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL DH++ + +++S ++ +VLDEAD MLD+GF  DI  ++   PKKR
Sbjct: 121 LIKGVDIVVATPGRLLDHVQQRSIDLSRIEILVLDEADRMLDMGFIHDIRRVMKVIPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA  + +   ++ +  +N   + +      V  + +   +   + 
Sbjct: 181 QTLLFSATFSSEIKKLASEFLEQPEQIQVTPQNTATTLVSQLVYPVDKNRKRELLSQQIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+   ++  + L +      A+ G  SQ  R+ AL   + G  R  +A
Sbjct: 241 EGNWQQVLIFTRTKHGANKLAEQLDKDGISAAAIHGNKSQGARTRALGDFKAGTIRALVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL + PE+ +HR GRT RAG++G ++ ++  +  +    + 
Sbjct: 301 TDIAARGIDIDKLPHVVNFELPNVPEDYIHRIGRTARAGQQGHAISLVCVDELKLLRDIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI 386
           +     +     P  E      A+ I
Sbjct: 361 KLLGKDIEKVYLPGFEVDPSIKAEPI 386


>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313716|ref|ZP_06804297.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 441

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS + +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSNNPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|158321361|ref|YP_001513868.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           oremlandii OhILAs]
 gi|158141560|gb|ABW19872.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
           OhILAs]
          Length = 461

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 137/469 (29%), Positives = 231/469 (49%), Gaps = 17/469 (3%)

Query: 1   MKI-FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  F N+   + I E L   G V  T +Q   +   L+ KD++  AQTG+GKT AF L 
Sbjct: 1   MKSEFLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +              AL +APTRELA+Q+  E + +     V V    GG  V ++
Sbjct: 61  ILQKINKNQKDV------QALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G H+V+ TPGRL DH+R   +++  +  +VLDEAD+ML +GF +++E+I+  +P
Sbjct: 115 IHKLKGGMHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+++++SATI   I  L   Y K+ V + I S      +I    V      +  A+++
Sbjct: 175 QNRQLMLYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRHKQEALMH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++      AIVFC T+  V   +  L E  F    L G+++Q +R   ++  R+ + ++
Sbjct: 235 MIKQENPFLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +  V + ++  + E  +HR GRTGRAG KGM++       +    
Sbjct: 295 LVATDVAARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLA 354

Query: 358 RLFREANVSVV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + R  N  +V           S+E   ER+A++  +     +  + +++K  D   AK 
Sbjct: 355 MIERGINQKIVKITFKPEGRVESIEETFEREAKKREERKNKDNKFKDNQRKNGDKNSAKG 414

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
              +  +     ++      +     +   GR+    +SR      G+R
Sbjct: 415 RKTE--SKRYDSNKNDKNDSKGNRSGNYGKGRENAGPNSRKGSSRRGNR 461


>gi|170744521|ref|YP_001773176.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168198795|gb|ACA20742.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 499

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 188/377 (49%), Gaps = 3/377 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I +AL+E GYV  T +Q   +   +  +D+   AQTG+GKT AF L +
Sbjct: 1   MTQFVDFGLAAPILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L +E   R +P      L ++PTRELA Q+                V  GGV++ R+
Sbjct: 61  LHRLASETPQRRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L NG  I+V TPGRL D I  + L++  ++ +VLDEAD+MLDLGF   ++ I+   P
Sbjct: 121 ERALANGVDILVATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L FSAT+   I TLA  Y +D V+V +         ++ R V V    +   +  
Sbjct: 181 KARQSLFFSATMPRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLAT 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       +VF  T+    R  + L +      A+ G  SQ +R  AL   R G  RV
Sbjct: 241 ILRDASIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G+++       +    
Sbjct: 301 LVATDIAARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYLR 360

Query: 358 RLFREANVSVVWEPAPS 374
            + R     V     P 
Sbjct: 361 DIERLTRQKVPEMAIPE 377


>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
           DSM 18315]
          Length = 419

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 187/389 (48%), Gaps = 9/389 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + I +AL +  Y   T +Q   +   L   D+L  AQTG+GKT AF + +  
Sbjct: 2   TFEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E           AL + PTRELA+Q+G         T V   V  GGV    +   
Sbjct: 62  KI-EEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D +    + +  L+  VLDEAD MLD+GF  DI+ IL   PKKR
Sbjct: 121 LERGVDVLIATPGRLLDLLSQGFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P I  LA     +  +V +   +     ID     V   ++ N + N+L 
Sbjct: 181 QSLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLE 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T+    +  +VL +      A+ G+  Q  R  AL   +D   RV IA
Sbjct: 241 DRSLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLIA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+  L  VI+ +L + PE  +HR GRTGRAGR G++            + + 
Sbjct: 301 TDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDIQ 360

Query: 361 REANVSVV------WEPAPSVEAIRERDA 383
           +     V       +E A   EA+ E+  
Sbjct: 361 KLIGKDVPVAGGHMFETAEVKEAVAEKKK 389


>gi|54307767|ref|YP_128787.1| ATP-dependent RNA helicase SrmB [Photobacterium profundum SS9]
 gi|46912190|emb|CAG18985.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           SS9]
          Length = 419

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 189/372 (50%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +     +  A+ E GY   T VQ   +   L  +DVL SA TG+GKT AF L +
Sbjct: 1   MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +  R  P  A   L + PTRELA+Q+      L   T + +    GG+S     
Sbjct: 61  IQHLL-DFPRKKPGPA-RVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL +++  +  +   ++ ++LDEAD MLD+GF   +E I      
Sbjct: 119 ELLGKTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVERINHECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT     +   ++   K+ V VN A   R+   I    +     D   A++ 
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  H A+ +IVF  TR  ++     LA    +   + GE++Q  R+NA+   RDG   +
Sbjct: 239 QILKHQAERSIVFVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG+++ ++  + Q   E
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RVSRYMEEEVPE 370


>gi|229173149|ref|ZP_04300699.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
 gi|228610326|gb|EEK67598.1| ATP-dependent RNA helicase [Bacillus cereus MM3]
          Length = 446

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  ++
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPKS 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|39936732|ref|NP_949008.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 474

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 188/373 (50%), Gaps = 5/373 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   +   I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +
Sbjct: 8   LTSFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 67

Query: 59  ASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              LL   +R  PAS     L ++PTREL+ Q+            +  A+ IGGV + R+
Sbjct: 68  LHRLL--QNRIKPASKTCRVLVLSPTRELSGQILDSFNAYGRHVHLSAALAIGGVPMGRQ 125

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L  G  ++V TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P
Sbjct: 126 VRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLP 185

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L FSAT+   I  LA+   +D  RV +   +     I+ R + +  S +  A+  
Sbjct: 186 IKRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAALAQ 245

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+      A+VF  T+    +  K LA       A+ G  SQ  R   L   R G  R 
Sbjct: 246 ILKDDKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRT 305

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G ++ +          
Sbjct: 306 LVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLR 365

Query: 358 RLFREANVSVVWE 370
            + +   VS+  E
Sbjct: 366 DIEKLIKVSLPKE 378


>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
 gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
           19624]
          Length = 506

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 202/362 (55%), Gaps = 2/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A+++ GY  +T +Q   +   L  +DV+ +AQTG+GKT AF L L   LL  E
Sbjct: 25  LAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQRLLKHE 84

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV ++++     T +  AV  GG+ +  +  +L+ G
Sbjct: 85  NASTSPARHPVRALVLLPTRELADQVAQQVKMYAKYTHLRSAVVFGGMDMKPQTLELKKG 144

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 145 VEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSHLPKQRTTLL 204

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y ++ + + +A  N   + ++     V   D+ +A+  +LR    
Sbjct: 205 FSATFSPEIKRLASSYLQNPITIEVARSNATATTVEQHFYSVGEDDKRHALRQVLRDKNL 264

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A VF +++   +R  + L     +  AL G+ SQ ER  AL   + G   + + TDVA
Sbjct: 265 KQAFVFVNSKLGCARLARALERDGLKTAALHGDKSQDERLKALDAFKKGEVDLLVCTDVA 324

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V  +     +    + +   
Sbjct: 325 ARGLDIKDVPAVFNIDIPFNAEDYVHRIGRTGRAGALGVAVSFVSPRDVKSVAEIEKLIK 384

Query: 365 VS 366
             
Sbjct: 385 TK 386


>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 550

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 191/358 (53%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L+ +DV+ +AQTG+GKT  F L L   L    
Sbjct: 19  LSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLELL--SK 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L + PTRELA QV   +E       +  AV  GGV ++ +   L++G  
Sbjct: 77  GQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRHGVD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    K +  + L+ +VLDEAD MLD+GF  DI  IL   PK+R+ LMFS
Sbjct: 137 VLVATPGRLMDLYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQNLMFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    +   +  +++ H  + 
Sbjct: 197 ATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQHDWQQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E   +  A+ G  SQ  R+ AL   ++G+ RV +ATD+AAR
Sbjct: 257 VLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVATDIAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N
Sbjct: 317 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLIN 374


>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
 gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
          Length = 516

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 14/392 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 61  ITIL---GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L +SAT++P I  +   +   AV++ +A +      I+ + + V  + ++ +    
Sbjct: 178 TRQTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L +H F    + G+L Q +R   L  
Sbjct: 238 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            + ++    +      ++     P   ++ +R
Sbjct: 358 PSDEKHVTAIESLVKQAIPRGELPEGFSLEDR 389


>gi|308389528|gb|ADO31848.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha710]
          Length = 457

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKSYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|304387245|ref|ZP_07369442.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
 gi|304338733|gb|EFM04846.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria meningitidis ATCC
           13091]
          Length = 457

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|221638948|ref|YP_002525210.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
 gi|221159729|gb|ACM00709.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides KD131]
          Length = 524

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 14/392 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 61  ITIL---GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L +SAT++P I  +   +   AV++ +A +      I+ + + V  + ++ +    
Sbjct: 178 TRQTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L +H F    + G+L Q +R   L  
Sbjct: 238 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            + ++    +      ++     P   ++ +R
Sbjct: 358 PSDEKHVTAIESLVKQAIPRGELPEGFSLEDR 389


>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
 gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
          Length = 518

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 14/392 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 3   MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 63  ITIL---GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQD 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 120 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L +SAT++P I  +   +   AV++ +A +      I+ + + V  + ++ +    
Sbjct: 180 TRQTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADK 239

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L +H F    + G+L Q +R   L  
Sbjct: 240 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDG 299

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG +  +  
Sbjct: 300 FRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAV 359

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            + ++    +      ++     P   ++ +R
Sbjct: 360 PSDEKHVTAIESLVKQAIPRGELPEGFSLEDR 391


>gi|126461963|ref|YP_001043077.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103627|gb|ABN76305.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 516

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 201/392 (51%), Gaps = 14/392 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    +     + +  A+ IGGVS   + 
Sbjct: 61  ITIL---GKGRARARMPRSLVLCPTRELAAQVAENFDIYAKHSKLSKALLIGGVSFTEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L +SAT++P I  +   +   AV++ +A +      I+ + + V  + ++ +    
Sbjct: 178 TRQTLFYSATMAPEIERITNTFLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L +H F    + G+L Q +R   L  
Sbjct: 238 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + ++ ++PE+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FRDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGRKGKAYTIAV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            + ++    +      ++     P   ++ +R
Sbjct: 358 PSDEKHVTAIESLVKQAIPRGELPEGFSLEDR 389


>gi|323507844|emb|CBQ67715.1| probable RNA helicase dbp2 (DEAD box protein) [Sporisorium
           reilianum]
          Length = 536

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P+ I   + + G+   +++Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 112 VTSFDEAGFPEYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPA 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+AL +APTRELA Q+  E       + +      GGV    + 
Sbjct: 172 MVHINAQ-PLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ GA I + TPGRL D +     N+  +  +V+DEAD MLD+GF   I  IL     
Sbjct: 231 RDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LMFSAT    +  LA ++  +  +VNI S     + ++     +    ++   ++ 
Sbjct: 291 DRQTLMFSATWPKEVQRLAGDFLNNFAQVNIGSTELAANHNVKQIIEVCTEFEKRGKLIG 350

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L    A N   I+F ST+      TK L +  +  +A+ G+  QQER   L   + GR+
Sbjct: 351 HLELISADNGKVIIFTSTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRS 410

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VA+RG+D+ D+  VI+ +  +N E+ +H+ GRTGRAGR G +         + 
Sbjct: 411 PIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKS 470

Query: 356 AER---LFREANVSVVWE 370
           A     + REA   +  E
Sbjct: 471 ARELVGILREAKQEIPRE 488


>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 578

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 193/372 (51%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  
Sbjct: 68  K--AKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  + K +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      V +++   N   + +      V  + +   ++ +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIERLINRV 365

Query: 367 VVWEPAPSVEAI 378
           +  +       +
Sbjct: 366 LERQEVEGFSPV 377


>gi|218462794|ref|ZP_03502885.1| ATP dependent RNA helicase protein [Rhizobium etli Kim 5]
          Length = 398

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 195/374 (52%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 61  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A        +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASAAKTVTQRFVASHSKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 238 ELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMMLQSFRDGNL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 357

Query: 356 AERLFREANVSVVW 369
            + + +     + W
Sbjct: 358 VDAIEKLIGEKIEW 371


>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
           EO147]
          Length = 395

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 8/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   PKKR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     +  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVV------WEPAPSVE-AIRERDAQR 385
            +       +EP P+ +    +R  QR
Sbjct: 368 EISQEVIAGFEPDPNAKPEPIQRRGQR 394


>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 581

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 185/374 (49%), Gaps = 4/374 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+   I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPILH 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       +        AL + PTRELA QV   +        +   V  GGV +  + 
Sbjct: 62  RLSQNPAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  I+V TPGRL D  +   ++++ ++ +VLDEAD MLD+GF  D++ +L   P 
Sbjct: 122 ERLQRGVDILVATPGRLLDLQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVPG 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA +  K+   + +   N     I      V    +   + +I
Sbjct: 182 DKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQVLRHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H     +VF  T+   +   + L ++    +AL G  SQ  R+ AL   ++G  R  
Sbjct: 242 IEQHDWSQVLVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGDIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ + PE+ +HR GRTGRAG  G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEGFMMD 361

Query: 359 LFREANVSVVWEPA 372
           + R     +  +P 
Sbjct: 362 IERFTQQQIPVQPI 375


>gi|229065471|ref|ZP_04200719.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
 gi|228715789|gb|EEL67561.1| ATP-dependent RNA helicase [Bacillus cereus AH603]
          Length = 450

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 201/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPMIKNVDE 382


>gi|224135925|ref|XP_002322195.1| predicted protein [Populus trichocarpa]
 gi|222869191|gb|EEF06322.1| predicted protein [Populus trichocarpa]
          Length = 450

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 199/382 (52%), Gaps = 6/382 (1%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++IF   N P    + +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 67  IRIFHEANFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 126

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  R      P+ L +APTRELAVQ+  E     +K  +      GG     + 
Sbjct: 127 FVHVAAQ-PRLVHGDGPIVLVLAPTRELAVQIQEEALKFGSKANIRSTCIYGGAPKGPQI 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +  + +N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 186 RDLQRGVEIVIATPGRLIDMLGAQHVNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+++  +  +V I S++ + +  I     ++   ++   ++ 
Sbjct: 246 DRQTLYWSATWPREVEALARHFLHNPYKVIIGSQDLKANQSIKQVVEVMMDLEKYKRLIK 305

Query: 238 ILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L+        ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + GR+ 
Sbjct: 306 LLKEVMDGSRILIFMETKKGCDQVTRQLRMDGWAALSIHGDKNQAERDWVLAEFKSGRSP 365

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ V++ +  S+ E+ +HR GRTGRAG +G ++    ++  + A
Sbjct: 366 IMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGARGTALTFFTESNAKFA 425

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             L +           PS+ A+
Sbjct: 426 RDLIKIL-QEAGQIVPPSLSAM 446


>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
 gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           holarctica 257]
          Length = 441

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010034|ref|ZP_02274965.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 441

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
 gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           D-4968]
 gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
           NSW150]
          Length = 421

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 184/368 (50%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +++ E GY   +S+Q   +   L  KDVL SAQTG+GKT +F L +   L  +   
Sbjct: 10  EPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPILQMLSTKPRA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S  +    L + PTRELA QV   +            V  GGV ++ +   L++G  I+
Sbjct: 70  NS--NRTRTLILTPTRELASQVHENIIQYGRYLSFRSTVVFGGVKINPQMMKLRSGVEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D    + +    +  +VLDEAD MLD+GF  D++ I++  PK R+ LMFSAT
Sbjct: 128 VATPGRLLDLYNQRAIQFDQVDTLVLDEADRMLDMGFIHDMKRIINYLPKNRQNLMFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I +  K      + +++   N     I      V  + +   + +++  +    A+
Sbjct: 188 FTDEIRSFVKTILNQPIEIDVTPRNTTVVKIKQTVHPVDKNRKAALLSHLIHRNKWNQAL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE      A+ G  SQ +R+ AL   + G   + +ATD+AARGI
Sbjct: 248 VFSKTKHGANKLVKQLAEAQIHAAAIHGNKSQSQRTKALNDFKSGELHILVATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L    E+ +HR GRTGRAG  G+++ ++  +   + + + +     + 
Sbjct: 308 DIDQLPCVVNFDLPQVAEDYVHRIGRTGRAGAIGLAISLVSADEVNQLQSIEKLIQHKLD 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIEIEDFE 375


>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 422

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ALSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSYDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|119481045|ref|XP_001260551.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
 gi|134034066|sp|A1DGZ7|DBP2_NEOFI RecName: Full=ATP-dependent RNA helicase dbp2
 gi|119408705|gb|EAW18654.1| RNA helicase (Dbp), putative [Neosartorya fischeri NRRL 181]
          Length = 545

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 118 VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 177

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 178 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQI 236

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 237 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 296

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 297 DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 356

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 357 HLEKIMENRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 416

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++        +
Sbjct: 417 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK 476

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 477 QARDLVTILTEAKQQI 492


>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 549

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 192/372 (51%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  
Sbjct: 68  K--AKVGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  + K +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      V +++   N   + +      V  + +   ++ +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQENWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIERLINRV 365

Query: 367 VVWEPAPSVEAI 378
           +  +       +
Sbjct: 366 LERQEVEGFSPV 377


>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
 gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
           nagariensis]
          Length = 622

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/391 (30%), Positives = 187/391 (47%), Gaps = 16/391 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+   P  I + +   G+   T +Q       L  +D++  A+TGSGKT  F L  
Sbjct: 121 LQTFESVGFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLP- 179

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P S P  L +APTRELAVQ+  E +     +G+      GG     + 
Sbjct: 180 -GMLHIQQTRKDPRSGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQL 238

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD+Q+G  IV+ TPGRL D +    + +  +  +VLDEAD MLD+GF   I+ I+ + P+
Sbjct: 239 RDIQHGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPR 298

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDN 233
           +R+ L FSAT    +  +A  +  +                  S   +  VL +  ++  
Sbjct: 299 QRQTLFFSATWPREVKHIAAQFVVNQTVHVFIGGVEEKLVANKSITQHVLVLNSSHEKFG 358

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  I+R   A   I+   T   +           F+  A+ G+  Q ER   LQ  +DG
Sbjct: 359 ELSRIIRSKPAGTRIIIFCTTKRMCDQLSYQMSREFRAAAIHGDKKQSERDYVLQAFKDG 418

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + +ATDVAARG+D+P++  V++ +  +  E+ +HR GRTGRAG  G +   +     
Sbjct: 419 RTPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGEAFTFMTGEDA 478

Query: 354 RRAERL---FREANVSVVWEPAPSVEAIRER 381
           + A  L    REA  +V     P +E +  R
Sbjct: 479 KHARDLIQVMREAQQTVP----PQLEQLAMR 505


>gi|91206537|sp|Q4X195|DBP2_ASPFU RecName: Full=ATP-dependent RNA helicase dbp2
          Length = 547

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 120 VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 179

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 180 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 238

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 239 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 298

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 299 DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 358

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  + +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 359 HLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 418

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++        +
Sbjct: 419 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSK 478

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 479 QARDLVTILTEAKQQI 494


>gi|303238786|ref|ZP_07325318.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593665|gb|EFL63381.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 381

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 196/373 (52%), Gaps = 4/373 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI   I +A+ E GY   T +Q+  +   L  +D+L  AQTG+GKT AF + L  T
Sbjct: 3   FEKLNIITPILKAICEEGYTTPTLIQQQAIPVILEGRDLLGCAQTGTGKTAAFAIPLLQT 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E            L + PTRELA+Q+G  LE     TG+  AV  GGVS   +   L
Sbjct: 63  LYKERTNLKGQRIVKGLILTPTRELAIQIGESLEAYGRYTGIKHAVIFGGVSQVPQVNKL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+V TPGRL D +  K +N+S LK ++LDEAD MLD+GF  D++ I+      R+
Sbjct: 123 RSGVDIIVATPGRLLDLMNQKYINVSCLKMLILDEADRMLDMGFSFDVKKIISRLTDTRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   IT +     K+ V+V +   +     I+     V   D+ + ++ +L+ 
Sbjct: 183 TLLFSATMPKEITKMVDAILKNPVKVEVTPVSSTVDTIEQNVYFVEQKDKKSLLIKLLKN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ +VF  T+    +  K LA+      A+ G+ SQ  R  AL   +  R RV +AT
Sbjct: 243 RAIESVLVFTRTKHGADKIAKDLAKLSITAQAIHGDKSQVARQIALNNFKLKRTRVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ +L  +I+ +L + PE  +HR GRTGRAG  G ++    +        + +
Sbjct: 303 DIAARGIDIQELSHIINFDLPNVPETYVHRIGRTGRAGMVGTALSFCDREEMGYLRAIQK 362

Query: 362 --EANVSVVWEPA 372
                + VV E  
Sbjct: 363 LISKKIPVVEEQP 375


>gi|134297916|ref|YP_001111412.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134050616|gb|ABO48587.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 460

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 191/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + E L   G    T +Q+  +   L  KDV+  AQTG+GKT+AF L +
Sbjct: 1   MNDFLQLGIRRELNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+           AL + PTRELA+Q+  E++ L +K    V    GG  V R+ 
Sbjct: 61  LEKIDAKKSYI------QALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQN 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ   HIV+ TPGRL DH+    + ++ +  +VLDEAD+ML +GF +++E I+  +  
Sbjct: 115 KRLQGNTHIVIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+   I  L+  Y +  + +++             AV      +   +  +
Sbjct: 175 KRQTMLFSATMPAEIRALSVKYMRKPMDIHVRGTGITLEKTKQIAVETTDRTKQETLRKL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +     I+FC T+   S   ++L  H +    L G+LSQ +R   ++  R+ + ++ 
Sbjct: 235 LDEYQPYLGIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G++V  +    +   + 
Sbjct: 295 VATDVAARGLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQM 354

Query: 359 LFREANVSVV 368
           + +   + + 
Sbjct: 355 IEKGIGMKLE 364


>gi|317026711|ref|XP_001399394.2| ATP-dependent RNA helicase dbp2 [Aspergillus niger CBS 513.88]
          Length = 564

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 136 VETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 195

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 196 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  + A   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 495 QARDLVTILTEAKQQI 510


>gi|126339554|ref|XP_001367967.1| PREDICTED: similar to DEAD-box protein p72 [Monodelphis domestica]
          Length = 772

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 220 NFPQYVMDVLMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 279

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 280 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 338

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 339 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 398

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 399 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 458

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 459 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 518

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 519 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 578

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 579 VLEEANQAINPK 590


>gi|186684628|ref|YP_001867824.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186467080|gb|ACC82881.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 509

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 215/490 (43%), Gaps = 25/490 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L + G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L           A
Sbjct: 18  LEKIGFTEPTNIQVQAIPQLLGGRDVVGQSQTGTGKTAAFSLPILERLDINQ------KA 71

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             A+ + PTRELA+QV   +       G+ V    GG S+ R+   L+ G H+VVGTPGR
Sbjct: 72  VQAIVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQMLQLRRGVHMVVGTPGR 131

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L +  +K  VLDEADEML +GF DD+  IL  +P  R+  +FSAT+ P+I 
Sbjct: 132 VIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTALFSATMPPSIR 191

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            L   + +    V +       + I+  A L+     +  A+  IL     + A++F  T
Sbjct: 192 MLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVRT 251

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  L
Sbjct: 252 RRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLVRFRNRQVRWVVATDIAARGLDVDQL 311

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    S      P
Sbjct: 312 SHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQTFERHNRQSWQLLSIP 371

Query: 374 SVEAIRERDAQRILQD--------------PLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +   I  R   ++ +               P+  + I+  + + +     +   ++    
Sbjct: 372 TRAQIEARHILKLQEQVREALTGERLASFLPIVSELIEEYDAQAIAAAALQIAYDQTRPA 431

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF---KVGGGSRDNFKGSSWFSLSVGSK 476
           +L                 L   R+   D  R+        G   +         S G +
Sbjct: 432 WLSSDVEIPQEESSAPKPRLGKRRESSSDRPRSAWKSDSNNGEERHSSPKPKLRTS-GHE 490

Query: 477 QKAEARWLMP 486
             A     + 
Sbjct: 491 SSASPSKKIG 500


>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
 gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
          Length = 437

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 186/385 (48%), Gaps = 7/385 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E GY   T +Q A +   +   D++  AQTG+GKT AF L + + L    
Sbjct: 8   LDANILKAVQEAGYTEPTPIQAAAIPQIIAGHDLIGIAQTGTGKTAAFVLPILAKLAGMK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +      AL +APTREL VQ+   +        + VA   GGV  H + + L++G  
Sbjct: 68  -REANQRGIRALVVAPTRELVVQIEENVRAYSKHLPLKVATVFGGVGEHPQIQALRSGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +  +  + S +  +VLDEAD MLD+GF   I  I+ + P+KR+ L+FS
Sbjct: 127 MVIATPGRLLDLMDRRHGDFSGINFLVLDEADRMLDMGFLPSIRQIVKALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  L   +Q     V I   +     +      V    +   +V++LR      
Sbjct: 187 ATLSREIEGLTHEFQHAPKTVQIGRRSNPAETVTQLVYEVPKHLKPALLVHLLRDPSMDM 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + S  R  + L     +   L    SQ +R  AL+  + G  RV +ATD+AAR
Sbjct: 247 VLVFSRMKHSADRIARNLENKGIKTATLHSNRSQNQRLRALKDFKSGAVRVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ +   + E+ +HR GRTGRA   G ++  +          L R     
Sbjct: 307 GIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFVTSEDHGTLRSLERFIGRG 366

Query: 367 VVWEPAPSVE------AIRERDAQR 385
           +V + A   +      A++  D +R
Sbjct: 367 IVRKKAEGFDYNAAAPAVQAGDRER 391


>gi|83950175|ref|ZP_00958908.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
 gi|83838074|gb|EAP77370.1| putative ATP-dependent RNA helicase protein [Roseovarius
           nubinhibens ISM]
          Length = 431

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 190/362 (52%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL+  G+   T +Q   +   L   D+L  AQTG+GKT+AFGL L + LLAE 
Sbjct: 9   LAPALNEALTRAGFSEPTPIQNQAIPLALEGHDILGLAQTGTGKTLAFGLPLINHLLAEP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +A  AL +APTREL  Q+   L  L   T + VA  +GG S++R+   L  G  
Sbjct: 69  GKPAPKTA-KALILAPTRELVNQIADSLRNLTDGTRLRVATVVGGQSINRQITFLARGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + +++  ++ +VLDEAD+MLDLGF   +  I       R+ ++FS
Sbjct: 128 ILVATPGRLIDLMDRRAVDLGSVRHLVLDEADQMLDLGFIHALRKIAPRLGTPRQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y ++  +V ++   +    I      +    + + +  IL       
Sbjct: 188 ATMPKQMEELSRAYLENPRKVQVSPPGKAADKITQSVHFLEKPAKPSKLREILSRDMDAL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  K L    +   ++ G  SQ +R  A++  R G   V +ATDVAAR
Sbjct: 248 TLVFSRTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEINVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  VI+ +L   P+N +HR GRT RAGR+G ++            ++ R   + 
Sbjct: 308 GIDIPGVAYVINYDLPDVPDNYVHRIGRTARAGREGEAIAFCSSEEADLLRQIQRLMKID 367

Query: 367 VV 368
           + 
Sbjct: 368 IP 369


>gi|291395373|ref|XP_002714087.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
           [Oryctolagus cuniculus]
          Length = 701

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 192/449 (42%), Gaps = 22/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 263 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 322

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ E     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 323 HLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHS 382

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 383 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 442

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    V +    + 
Sbjct: 443 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKR 502

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 503 EKLVEILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 562

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 563 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 622

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F     G        + A  D
Sbjct: 623 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVD 670

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             K   G   ++ AG    +  TPV   S
Sbjct: 671 TRKNYQGKSTLNTAGFSTSQTPTPVDDES 699


>gi|291395371|ref|XP_002714086.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
           [Oryctolagus cuniculus]
          Length = 729

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/449 (26%), Positives = 192/449 (42%), Gaps = 22/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 291 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 350

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ E     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 351 HLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHS 410

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 411 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 470

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    V +    + 
Sbjct: 471 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKR 530

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 531 EKLVEILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 590

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 591 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 650

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F     G        + A  D
Sbjct: 651 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYTPGFSGSTRGNMFASVD 698

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             K   G   ++ AG    +  TPV   S
Sbjct: 699 TRKNYQGKSTLNTAGFSTSQTPTPVDDES 727


>gi|294637108|ref|ZP_06715421.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
 gi|291089702|gb|EFE22263.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda ATCC 23685]
          Length = 452

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ E+GY + T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQLLHQNP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  KNGKGRRPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +   +   V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAASLLHNPAEVEVARRNTASELVSQHVHLVDKKRKRELLSFLIGSQDWRQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRP 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRMAIAGYEPDPSIKA 384


>gi|126303302|ref|XP_001379053.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD box protein 27) [Monodelphis domestica]
          Length = 796

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 218/434 (50%), Gaps = 19/434 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 229 NLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 288

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L+ 
Sbjct: 289 -----PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALRA 343

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ 
Sbjct: 344 GPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQT 403

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNIL 239
           ++FSAT++  +  LA    K+ VR+ + S       +    + +  +    R+  +  +L
Sbjct: 404 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 463

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +
Sbjct: 464 TRTFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 523

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + +
Sbjct: 524 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 583

Query: 360 FREANVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A   V     P    ++ R   +++ +D   +  ++ +EK+M      +H   +I  
Sbjct: 584 VKSAKAPVKARILPQDVILKFRGKIEKMEKDVYAVLRLEAEEKEM------QHSEAQINT 637

Query: 419 GFLRIHRAGLCAPE 432
              R+   G   PE
Sbjct: 638 A-KRLLEKGNEEPE 650


>gi|282897303|ref|ZP_06305305.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
 gi|281197955|gb|EFA72849.1| DEAD/DEAH box helicase-like protein [Raphidiopsis brookii D9]
          Length = 497

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 221/473 (46%), Gaps = 13/473 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   T++Q   +   L  +DV+  +QTG+GKT AF L +   L           A
Sbjct: 19  LENMGFTTPTNIQSQAIPQLLAGRDVVGQSQTGTGKTAAFSLPILERLDPNK------RA 72

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELA+QV   +      + + V    GG S+ R+   L+ G H+VVGTPGR
Sbjct: 73  VQALVLTPTRELAMQVHDAISQFMGDSELRVLAIYGGQSIDRQMIQLKRGVHVVVGTPGR 132

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L +  +K  VLDEADEML +GF DD+  IL  +P++R+  +FSAT+ P+I 
Sbjct: 133 VIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPQERQTALFSATMPPSIR 192

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFCST 253
            L   +    V V +       + I+  A L+     +  A+  IL     + A++F  T
Sbjct: 193 QLVNKFLNSPVTVTVEQPKATPTKINQVAYLIPRHWTKAKALQPILEMEDPETALIFVRT 252

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R + +  T  L      V    G+LSQQ R   L   R+ + R  +ATD+AARG+D+  L
Sbjct: 253 RRTAAELTNQLQSAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATDIAARGLDVDLL 312

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             VI+ +L  + E  +HR GRTGRAG++G ++ ++    +R+ +   R    +      P
Sbjct: 313 SHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERHNRQNWQVLSIP 372

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL----AKHDPEKIAAGFLRIHRAGLC 429
           +   I  +  Q++ +     +++ G+       ++     K+D + IAA  L++      
Sbjct: 373 TRAQIEAKHIQKLKEQ--VSEALAGERLASFLPIISELTEKYDAQAIAAAALQLAYDQTR 430

Query: 430 APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                  V +       +      +  G      +G SW     G + K   +
Sbjct: 431 PAWLQNGVDIPVEEPTPKPKINKRRESGDGNGVGRGRSWSKSDYGDESKPTPK 483


>gi|226356665|ref|YP_002786405.1| DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti VCD115]
 gi|226318655|gb|ACO46651.1| putative DEAD-box ATP-dependent RNA helicase 3 [Deinococcus deserti
           VCD115]
          Length = 602

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 155/568 (27%), Positives = 253/568 (44%), Gaps = 40/568 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + I   +   L+ERG    + +Q   L   L  +D++  A+TG+GKT+AF L +  
Sbjct: 1   MNFDQLIAPELAARLAERGITEASPIQAESLPLTLAGRDMIGRARTGTGKTLAFALPIIQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R  P   P A+ +APTRELA QV  E        G+      GG S   +   
Sbjct: 61  KLEPSRERARP---PRAIVVAPTRELAKQVAEEFSKSG--VGLTTVTVYGGASYAPQENA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL DH+    L++S ++  VLDEADEML +GF D IE IL  +P  R
Sbjct: 116 LRRGVDVVVGTPGRLIDHLERGNLDLSAVEFAVLDEADEMLSVGFADAIETILQKTPDSR 175

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT  +          ++  +   +     Q +       +     R   + ++L
Sbjct: 176 QTMLFSATLNNDINRLSRNYLREPVIVDMVGEGKSQAAQTVEHLKVRVGRSRTRVLADLL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + AIVF  T+         L     +  AL G+L+Q +R  AL   R GR  V +
Sbjct: 236 TIYNPEKAIVFTRTKREADELANELIHRGLEAEALHGDLAQSQRERALGAFRSGRVGVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +      R    L
Sbjct: 296 ATDVAARGLDIPEVDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIIMYGDRENREVMGL 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-IQGDEKKMVDVLLAKHDPEKIAA 418
            R   V  +  P P+ + ++   A+        +DS +    +   + L ++   E +  
Sbjct: 356 ERITGVRFIERPLPTPKEVQAASAKTSADMVRKVDSGVAATFQAEAERLFSELGLEALTR 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
              +I        E     SL+SG +                    G +   L     ++
Sbjct: 416 ALAKIS----GVTEPTKAASLLSGEE--------------------GLTTLIL---HGER 448

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
                 + +L R+  ++ + +G +R     T  +V ++ +  L     L+  +Q++    
Sbjct: 449 MSIARTVALLARAGDVDTRRLGKVRQWRGGTVADVPSEYLQKLLAANPLEGEVQIEVAQ- 507

Query: 539 EKPDF-----RGYKSSGFKSKNSQDGAT 561
           E P+      R  +  G++  N      
Sbjct: 508 ELPELFEQAVRERREGGYQGGNRGTRDE 535


>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 555

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 189/370 (51%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 14  LSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILERLSHSR 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      AL + PTRELA QV + +        +   V  GGV ++ +   L+ G  
Sbjct: 74  A-TSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALRRGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ + +++S L+ +VLDEAD MLD+GF  DI+ +L   P +R+ L+FS
Sbjct: 133 IVVATPGRLLDHLQQRTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQNLLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA N       + +A  N     +      V    +   + ++++ H    
Sbjct: 193 ATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHLIKAHNWFQ 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+AAR
Sbjct: 253 VLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G ++ ++  +  +    + R    +
Sbjct: 313 GIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLTDIERLIKRT 372

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 373 LPREVIAGFE 382


>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 428

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/425 (27%), Positives = 198/425 (46%), Gaps = 23/425 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   + +  A+ E GY   T +QE  +       DVL  AQTG+GKT A+ L + 
Sbjct: 3   KTFKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     +++      AL +APTREL +Q+      L   T + +    GG+    +  
Sbjct: 63  MKV-----KYAQGQNMRALVLAPTRELVMQIHEAAVGLAKYTDLRMVALYGGLGPKTQME 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I++ TPGR  D  R   + +  L+ ++LDEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 NLKKGVDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMMDMGFMPQIRQILEVIPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
           R+ L+FSAT  P +  L++ + +   ++ +       S ++     L     + N +  +
Sbjct: 178 RKNLLFSATFQPRVERLSEEFLEAPYKIEVTPSATAASTVEQHIYRLPNFKTKINLLGYL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL---SGELSQQERSNALQMMRDGRA 295
                   AI+FC T+A      K L   +     +        Q  R NA+   + G  
Sbjct: 238 FENTEIPRAIIFCRTKAVADNVYKFLERKVIGSGKIRVLHANKGQNTRINAINDFKSGEI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V ++TDVAARGID+  +  VI+ ++    E+ +HR GRTGRA  +G+++  + ++ +  
Sbjct: 298 QVLVSTDVAARGIDVSGVSHVINFDVPLVYEDYVHRIGRTGRAKSEGIALTFVLKHEEFH 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRER------------DAQRILQDPLFLDSIQGDEKKM 403
            ER+ +     +   P P    I E             D QR   DP F  +    + K 
Sbjct: 358 IERIEKLIRNPIPELPIPEKVKIEETSFEENQEMLKAIDTQRKKLDPTFQGAFHEKKAKN 417

Query: 404 VDVLL 408
               L
Sbjct: 418 ARKPL 422


>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase domain-containing protein [Prosthecochloris
           aestuarii DSM 271]
 gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
           DSM 271]
          Length = 418

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 192/371 (51%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I  AL E GY   T +Q   +   L   D+L  AQTG+GKT AF + L   LL+E
Sbjct: 7   NIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLLQ-LLSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + +       AL + PTRELA+Q+G   +     TG+   V  GGV+ + +   L+NG 
Sbjct: 66  RNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAASLRNGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +    L++  ++ +VLDEAD MLD+GF  DI  IL + P+K++ L F
Sbjct: 126 DIVVATPGRLLDLMGQGHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKKQSLFF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     +  +V++   +     I  +   V   +++  +V++L+    K
Sbjct: 186 SATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLLKDQSIK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L +H     A+ G   Q  R  AL   +    RV +ATD+AA
Sbjct: 246 TALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA---ERLFRE 362
           RGID+  L  VI+ ++S+  E  +HR GRTGRAG +G ++       +      E+L  +
Sbjct: 306 RGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLCDVEKLIAK 365

Query: 363 ANVSVVWEPAP 373
               +   P P
Sbjct: 366 KIPVIDRHPFP 376


>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 480

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/363 (37%), Positives = 205/363 (56%), Gaps = 2/363 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A+++ GY N+T +Q   +   L  KDV+ +AQTG+GKT AF L L   LL  E
Sbjct: 10  LAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQRLLKHE 69

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   SPA  P+ AL + PTRELA QV +++      T +   V  GG+ +  +  +L+ G
Sbjct: 70  NSSASPARHPVRALVLLPTRELADQVAQQIAMYAKYTKLRSTVVFGGMDMKPQTAELKKG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K   ++ ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 130 VEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPKQRTTLL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y +D V + +A  N   S ++ R   V   D+  AI ++L   G 
Sbjct: 190 FSATFSPEIKRLAGSYLQDPVTIEVARPNETASTVEQRFFSVQDDDKRRAIRHVLTERGL 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K A +F +++   +R  + L     +  AL G+ SQ ER  AL+  + G   + + TDVA
Sbjct: 250 KQAFIFVNSKLGCARLARSLERDGLKTAALHGDKSQDERLKALEAFKSGDVDLLVCTDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V + ++  N E+ +HR GRTGRAG  G++V ++     R    + +   
Sbjct: 310 ARGLDIKDVPAVFNHDVPFNAEDYVHRIGRTGRAGASGLAVTLVGSGDARLVADIEKLIK 369

Query: 365 VSV 367
             V
Sbjct: 370 KKV 372


>gi|197334932|ref|YP_002155940.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197316422|gb|ACH65869.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 431

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 199/379 (52%), Gaps = 2/379 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     I +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +  +A  AL +APTRELA Q+   +      T + V    GG  +  + R L+ G
Sbjct: 66  SKKSATRRTA-RALILAPTRELAEQIAVNIADYTKYTSLTVTSVFGGKKMSSQERALEPG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI  + ++I++L+ +V DEAD MLD+GF + I  I+       ++++
Sbjct: 125 VDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+++  EN   S I +    V    +   +  ++     
Sbjct: 185 FSATSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVA
Sbjct: 245 QQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG+KG ++  + +  +    ++     
Sbjct: 305 ARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVVQVETLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDA 383
             +     P  E  + RDA
Sbjct: 365 QRIRRVEQPGYEP-KNRDA 382


>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 482

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 193/385 (50%), Gaps = 12/385 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +
Sbjct: 7   LTSFQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +LA+  +  P +    L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 67  LHRILADRIKPQPKN-CRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++   L +  ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 126 RSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPI 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA+   +D  RV +         I+ R + +  S +   +  I
Sbjct: 186 KRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLAQI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G   A+VF  T+    +  K L        A+ G  SQ  R   L   R G  R  
Sbjct: 246 LQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G ++ +     +    R
Sbjct: 306 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEEVGYLR 365

Query: 355 RAERLFR-----EANVSVVWEPAPS 374
             E+L R     E + +   +PAPS
Sbjct: 366 DIEKLIRVALPKEDHRTPGAKPAPS 390


>gi|323492253|ref|ZP_08097411.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
 gi|323313566|gb|EGA66672.1| putative ATP-dependent RNA helicase RhlE [Vibrio brasiliensis LMG
           20546]
          Length = 427

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 204/392 (52%), Gaps = 2/392 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPLARRGHDILANAQTGTGKTAAFALPIVQNIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           ++D+ +      A+ + PTRELA QV   ++     T +      GG  +  +++ L+ G
Sbjct: 65  DSDKSANRHQTRAVILTPTRELAEQVASNIQDYTKYTDIKTVAIFGGKKMATQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +HI    +++++L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHIELNNVSLANLEFLVFDEADRMLDMGFIASIEKIMSGVTTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA    +   RV++A EN     I +    V    +   +  ++     
Sbjct: 185 FSATFSTQMNKLASEILRQPKRVSVARENVTADTIAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV IATDVA
Sbjct: 245 KQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALEEFKTGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V  + +  +   +++     
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNREEELTLQQVETLIG 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDS 395
             +  +     E   R+   +++   P F + 
Sbjct: 365 QRIYRKELEGYEPKNRDALLEKMHSKPAFKNR 396


>gi|229017793|ref|ZP_04174677.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
 gi|229024016|ref|ZP_04180493.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228737285|gb|EEL87803.1| ATP-dependent RNA helicase [Bacillus cereus AH1272]
 gi|228743484|gb|EEL93600.1| ATP-dependent RNA helicase [Bacillus cereus AH1273]
          Length = 450

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 217/463 (46%), Gaps = 28/463 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPASKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +                ++I++ P+  +  +  +              +      R  R
Sbjct: 366 PIQ---------------RQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQ------RDSR 404

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            G  +  +  P +      R  ++    K         +G   
Sbjct: 405 EGSRSGSKGGPRNDSRNSSRNDNNRSFNKPSNKKSSTKQGQQR 447


>gi|229011722|ref|ZP_04168904.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
 gi|229167295|ref|ZP_04295034.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228616171|gb|EEK73257.1| ATP-dependent RNA helicase [Bacillus cereus AH621]
 gi|228749519|gb|EEL99362.1| ATP-dependent RNA helicase [Bacillus mycoides DSM 2048]
          Length = 450

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 219/463 (47%), Gaps = 28/463 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+  VS+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRVSKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +                ++I++ P+  +  +  +              +      R  R
Sbjct: 366 PIQ---------------RQIIEQPMIKNVDENGKPVQKPAPKKSGQYRQ------RDSR 404

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            G  +  +  P +      R  ++    K         +G   
Sbjct: 405 EGSRSGSKGGPRNDSRNSSRNDNNRSFNKPSNKKSSTKQGQQR 447


>gi|218676343|ref|YP_002395162.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
 gi|218324611|emb|CAV26155.1| Superfamily II DNA and RNA helicase [Vibrio splendidus LGP32]
          Length = 428

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/419 (28%), Positives = 214/419 (51%), Gaps = 7/419 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLN 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G
Sbjct: 66  SGKKASRGTA-RGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   + + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++GRARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G ++  + +  +    ++ +   
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVVQVEKLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +     P  E  ++RDA         L++    + +      A  +P+  A+   R+
Sbjct: 365 QRIRRVEQPGYEP-KKRDA-----YIEKLNTKSAYKNRQGRKNNANEEPQDQASAERRL 417


>gi|161870287|ref|YP_001599457.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
 gi|161595840|gb|ABX73500.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
           053442]
          Length = 457

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 416

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 130/390 (33%), Positives = 209/390 (53%), Gaps = 7/390 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
                  +      + E   +   +  L+ 
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKK 384


>gi|330997890|ref|ZP_08321724.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329569494|gb|EGG51264.1| DEAD/DEAH box helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 483

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 191/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  ++ ++   + +AL +  +   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           S L   +D   P  A   + ++PTRELA Q+ + +E       V          G+   +
Sbjct: 61  SKL---SDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E+R L  GA +++ TPGRL  H+    +++S +   VLDEAD MLD+GF DDI  I+   
Sbjct: 118 EKRGLAMGADVIIATPGRLISHLSLGNVDLSEVSFFVLDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA+    D V V   + ++    I   A +   + + + + 
Sbjct: 178 PKERQTIMFSATMPRKIQDLARTILHDPVEV-KLAVSKPADKIVQSAYVCYEAQKVSLVK 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +         IVF S++  V      L    F+V A+  +L QQER   +   +  +  
Sbjct: 237 KLFAERPPHRVIVFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+ ARGID+ D++LVI+ ++  + E+ +HR GRT RA   G ++ ++ +  Q+R 
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 357 ERLFREANVSVVWEPAPS 374
             +       +     P 
Sbjct: 357 ASIEHFLETEIEKRSLPE 374


>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
           DSM 45221]
          Length = 465

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/398 (31%), Positives = 189/398 (47%), Gaps = 10/398 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +P  + I  ALS++GY   + +Q   +   L   D+L  AQTG+GKT AF L L  
Sbjct: 5   TFQELPLAEPIQRALSDKGYTTPSPIQARAIPVLLEGGDLLACAQTGTGKTAAFALPLLH 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + AE  R         L + PTRELAVQV    E           +  GGVS   + + 
Sbjct: 65  GI-AERPRKPFRRGVRHLVLTPTRELAVQVAENFELYGKHIKFRSMMVYGGVSEKPQIKT 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++V  PGRL D +    +++S ++  +LDEAD MLD+GF  DI  I    PKKR
Sbjct: 124 LFQGVDVLVACPGRLIDLMDQGHVDLSQVETFILDEADRMLDMGFIRDIRKIAAKLPKKR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++P IT L          + IA +      +D     +    +   ++ +L 
Sbjct: 184 QTLLFSATMAPEITKLGHAMLHQPAEIRIAPQGTTADKVDQSLCFIGKKAKPKLLLEMLH 243

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +     ++VF  T+       K L     +  A+ G  SQ  R   L+  R G   
Sbjct: 244 RRFDEQPNELSLVFTRTKHGAKNLAKKLNGEGLKADAIHGNKSQSAREKTLERYRRGEID 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---Q 353
           + +ATDVAARGID+ ++ LVI+ +L    +  +HR GRT RAG  G +V    +      
Sbjct: 304 ILVATDVAARGIDVKNITLVINFDLPMEADAYVHRIGRTARAGASGHAVSFCSEEEVALL 363

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           R+ ERL ++        P    +A+    ++R ++ P 
Sbjct: 364 RQIERLIKKTVPVDESHPFHDADAMELHLSRRPVKKPA 401


>gi|114706869|ref|ZP_01439769.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
 gi|114537817|gb|EAU40941.1| Superfamily II DNA and RNA helicase [Fulvimarina pelagi HTCC2506]
          Length = 457

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 191/371 (51%), Gaps = 3/371 (0%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   + + +  AL+       T +QE  +   L  +D+L  AQTG+GKT AF L L 
Sbjct: 4   TTFDGFGLAEPLTRALARLELTTPTPIQERAIPHALAGRDMLGIAQTGTGKTAAFALPLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+    + +  +   AL ++PTRELAVQ+   +  L   T +   V  GGVSV  + +
Sbjct: 64  HHLMTVGGKPTTRT-TKALILSPTRELAVQIAESIADLSEGTPISHCVVFGGVSVRPQIQ 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +  + +++   + ++LDEAD MLD+GF  D+  I+   P  
Sbjct: 123 ALARGVDILVATPGRLLDLMEQRAIDLRETRHLILDEADRMLDMGFVRDVMKIVGKCPDD 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MFSAT+   I  L+K    +  +V++         I      V    + + +++ +
Sbjct: 183 RQSMMFSATMPKPIEDLSKKILTNPQKVSVTPAVVTVEKIAQSVFSVPQRAKKHWLIDFV 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     +VF  T+   +R T  L +   Q +A+ G  SQ  R  AL   +DG   V +
Sbjct: 243 SKNDTGRIVVFTRTKHGANRLTSDLDKAGIQALAIHGNKSQTARQKALGAFQDGEIDVLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+ ARGI + D+  V++ +L   PE+ +HR GRT RAGR G ++ ++  + + + +++
Sbjct: 303 ATDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGRSGQAIALVDPSERAKLKQI 362

Query: 360 FREANVSVVWE 370
            +   + +  +
Sbjct: 363 IKLTGIDLTPQ 373


>gi|258593189|emb|CBE69527.1| ATP-dependent RNA helicase [NC10 bacterium 'Dutch sediment']
          Length = 407

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 187/372 (50%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++P  I   +   G+   T +Q   L   L  KD+   AQTGSGKT AF + L
Sbjct: 1   MTTFDTFSLPASIARGIEAAGFTQCTPIQAETLPLALAGKDIAGQAQTGSGKTAAFLIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL      + + AP AL +APTRELAVQ+  + E L   TG+      GGV   ++R
Sbjct: 61  FVRLLTSRHP-TLSGAPRALILAPTRELAVQILWDAELLGGFTGLTRLAAYGGVDYQKQR 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ    I++GTPGRL D+ +     +S ++ +V+DEAD M D+GF  D+ F+L   P 
Sbjct: 120 DALQQNVDILIGTPGRLIDYFKQGVYELSQVEVLVVDEADRMFDMGFIKDLRFLLRRLPP 179

Query: 179 KRRMLMF--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +   F  SAT+S     L+  +  + ++V I+ E      +++    V   ++   + 
Sbjct: 180 YHKRQSFLFSATLSFREMELSYEFMNNPIKVAISPEQVTVDKVEHLLFHVEKQEKFRLLR 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    +  ++F +TR    R T  L    F+   +SG + Q++R   +   + G   
Sbjct: 240 WLLQREAWQRILIFSNTRQGAERLTDKLVRCGFRAGLISGSIDQRKRLQIITKFKAGTLP 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+ +  +  VI+ +L  +PE+ +HR GRT RAG  G ++ +  +      
Sbjct: 300 ILVATDVASRGLHVEAVSHVINYDLPQDPEDYVHRIGRTARAGAAGKAISLADEEYVLSL 359

Query: 357 ERLFREANVSVV 368
           + + R     + 
Sbjct: 360 DAIERYIGFKIP 371


>gi|254506544|ref|ZP_05118685.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219550417|gb|EED27401.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 419

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 4/374 (1%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   FE++     I   LS  G+   T VQ   +   L  KDVL  AQTG+GKT AFGL 
Sbjct: 1   MSTQFESLGLCPTILSTLSSLGFEQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           +   L+    +  P ++   AL + PTRELA QV   L      T + +    GG S++ 
Sbjct: 61  IIQKLIESEAKRDPQSNDVRALVLVPTRELAQQVFDNLVQYAQATELKIVAAYGGTSMNV 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R+L+ G  I++ TPGRL DH+  K +++   + +VLDEAD MLD+GF  DI+ IL   
Sbjct: 121 QTRNLEQGCDILIATPGRLIDHMFCKNVSLLKSEFLVLDEADRMLDMGFMPDIQRILKRF 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R+ L FSAT    I  +A   Q + V V +++ N     +      V    +   + 
Sbjct: 181 NAVRQTLFFSATFDKRIKNIAYKLQSEPVEVQVSASNSTAETVKQMVYPVDKKRKAELLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     +  +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R
Sbjct: 241 YLIGSRNWQQVLVFTKTKQGSDALVKELKLDGIKAASINGDKSQGARQKALDDFKAGKIR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IATDVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG++G +V  + ++     
Sbjct: 301 ALIATDVAARGLDIQELEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSFMSRDEHYLL 360

Query: 357 ERLFREANVSVVWE 370
           E + R  +  +  E
Sbjct: 361 EAIERLLDTRLPQE 374


>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 507

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/375 (35%), Positives = 202/375 (53%), Gaps = 6/375 (1%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++   P+++   L E GY   T +Q   +   +  KD++  AQTG+GKT AF L + 
Sbjct: 24  TFADLGLAPELLRAVLDE-GYTKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPIL 82

Query: 60  STLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             +L   +   SPA  P+ AL +APTRELA+QV   ++     T +      GGV +  +
Sbjct: 83  QRILPFASSSPSPAKHPVRALILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQ 142

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  I+V TPGRL DH+  K ++ + ++A+VLDEAD MLD+GF  D+  IL+  P
Sbjct: 143 IAELKKGVEILVATPGRLLDHVENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNMLP 202

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT S  I  LA    K  + + +A  N+    I +R   V+   +   +  
Sbjct: 203 AQRQSLLFSATFSEEIKKLADTMLKSPILIEVARRNQVSDTITHRVHPVSEYGKRGLLTK 262

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    +  IVFC T+   SR T+ L     +  A+ G+ SQ ER  AL+  + G    
Sbjct: 263 LLKSGEIRQCIVFCRTKQGCSRLTRELQRAGIKADAIHGDKSQLERIKALEAFKGGETDA 322

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+ DL  VI+ EL   PE+ +HR GRTGRAG+KG ++ ++  +      
Sbjct: 323 LIATDVAARGLDVDDLPYVINYELPHTPEDYVHRIGRTGRAGKKGNAISLVSAHEVCYLV 382

Query: 358 RLFREANVSVVWEPA 372
            + +     +     
Sbjct: 383 DIEKLIKRPIEQVEV 397


>gi|307824474|ref|ZP_07654699.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307734458|gb|EFO05310.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 441

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 140/449 (31%), Positives = 222/449 (49%), Gaps = 22/449 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++++GYV  T VQ+  +   L  KDVL  AQTG+GKT +F L L   L   +
Sbjct: 8   LADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQRLAENH 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D         AL + PTRELA QV   ++   A         +GG S+  + R L+ G  
Sbjct: 68  DPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQLRRGCD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ + +N+S+++ +VLDEAD MLD+GF  DI+ ++   PKKR+ L+FS
Sbjct: 128 IVVATPGRLIDHVQQRNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKKRQSLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI +LA     + V V +A +N    ++  R   +    +   +  ++  +  K 
Sbjct: 188 ATVPNAIKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRELLSYLIGSNNWKQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L E   +  AL G+ +Q  R+ AL+  + G+  V +ATD+AAR
Sbjct: 248 VLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL  V++ ++   PE+ +HR GRTGRAG  G ++ ++          + +     
Sbjct: 308 GLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWMLVEIEK----- 362

Query: 367 VVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKI---AAGF 420
                      + +R   R+     +P+ L  I   +K   +    K D       AA  
Sbjct: 363 -----------LLKRQIPRVADTGYEPVSLKVIDAPKKNAPNKTTGKKDMRHTKKPAARG 411

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            +    G+  P+     S   GR   R  
Sbjct: 412 AKPTVRGVKQPDSKRIESRGKGRSGSRGK 440


>gi|229109888|ref|ZP_04239470.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
 gi|228673542|gb|EEL28804.1| ATP-dependent RNA helicase [Bacillus cereus Rock1-15]
          Length = 458

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 199/377 (52%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   L  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPFILSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PIQREIIEQPKIKRVDE 382


>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 472

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 195/377 (51%), Gaps = 4/377 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L L  
Sbjct: 5   TFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLLQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+      +    P AL + PTRELA QV   +        +   V  GGV+++ + + 
Sbjct: 65  LLMCSPSHHAGR--PRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V TPGRL DH+  K +++S ++ +VLDEAD MLD+GF  DI+ +L   P +R
Sbjct: 123 LRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAKLPAQR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     +   V +A  N  +  +  +  LV    +   +++++R
Sbjct: 183 QNLLFSATFSDEIKALADKLLDNPKLVEVARRNTTNELVSQKVHLVDRDKKTELLIHLIR 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   + G  +V +A
Sbjct: 243 EQNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRALADFKSGELQVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++  +       + 
Sbjct: 303 TDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRDIE 362

Query: 361 REANVSVVWEPAPSVEA 377
           +   +S+     P  EA
Sbjct: 363 KLIKMSIERFTVPGFEA 379


>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
          Length = 446

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/355 (32%), Positives = 191/355 (53%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+++ GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 17  LSESLLKAVADEGYTAPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLHGL--SK 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+   AL + PTRELA QV   ++       +  AV  GGV ++ +   L+ G  
Sbjct: 75  GQPAKANQVRALVLTPTRELAAQVAESVDIYGKYLNLRSAVVFGGVKINPQMMRLRKGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D  +   ++   L+ ++LDEAD MLD+GF  DI  I+ + PKKR+ LMFS
Sbjct: 135 ILIATPGRLLDLYQQNAMSFQKLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQNLMFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     +      V  + + + +V ++  H  + 
Sbjct: 195 ATFSEDIRDLAKTIVNNPVEISVTPRNSTAVSVTQWIHPVDKNQKRHLLVELINQHNWEQ 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +   Q  A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 255 VLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L  V++ +L    ++ +HR GRTGRAG  G ++ ++  +  +  + + R
Sbjct: 315 GLDIEQLPQVVNLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIER 369


>gi|303315651|ref|XP_003067830.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240107506|gb|EER25685.1| ATP-dependent RNA helicase DBP2, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|320034056|gb|EFW16002.1| ATP-dependent RNA helicase DBP2 [Coccidioides posadasii str.
           Silveira]
          Length = 545

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 127 VETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 186

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 187 IVHINAQ-PLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 246 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 305

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++V I S+    N + + I          DR   
Sbjct: 306 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 365

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 366 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 425

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  +
Sbjct: 426 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 485

Query: 355 RAER---LFREANVSV 367
           +A     +  E+   +
Sbjct: 486 QARDLVNILTESKQQI 501


>gi|288920380|ref|ZP_06414691.1| helicase domain protein [Frankia sp. EUN1f]
 gi|288348257|gb|EFC82523.1| helicase domain protein [Frankia sp. EUN1f]
          Length = 322

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 21/327 (6%)

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+++     + L    F   A++G+L Q +R   +  +RDG   + +ATDVAARG
Sbjct: 7   IIFVRTKSATEDVAERLRSRGFATEAINGDLGQPQREKLIAQLRDGALDLLVATDVAARG 66

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++    +     + +     +
Sbjct: 67  LDVERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIEKATRQPL 126

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDP--EKIAAGFLRI 423
                P+ E +  R   +                 + +V     +HD     IAA    +
Sbjct: 127 AEMELPTAEDVNARRVAKFHDAITAALDAPAHAVFRDLVLGYTREHDVPLADIAAALAVM 186

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
            R        + P S    R+R            G     +  + + + VG +Q+     
Sbjct: 187 TRQ-EPGEFLLPPDSAPPVRER---------PARGVGGPRRVYAVYRIGVGHRQRVTPGQ 236

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDKGIQLKYLGGE 539
           ++  L    G+ R   G I ++ D + VE+ AD        L RT    + + L+    E
Sbjct: 237 IVGALANEGGLARADFGRIDIRADYSLVELPADLTKATQRALTRTRIAGQPLNLR---AE 293

Query: 540 KPDFRGYKSSGFKSKNSQDGATKRFKR 566
           +P        G   +     + +R +R
Sbjct: 294 RPSRESGARPGTGRRGKPAPSARRTRR 320


>gi|229030176|ref|ZP_04186236.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
 gi|228731134|gb|EEL82056.1| ATP-dependent RNA helicase [Bacillus cereus AH1271]
          Length = 446

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E 
Sbjct: 12  ISETFNHTLRENGITEATPIQEQAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                 S   AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 71  -----CSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y  +   + + SE    + I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMDEPQMIQVQSEEVTVNTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGIAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  E    P ++ + E
Sbjct: 366 PLQREIIEQPKIKRVDE 382


>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 460

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 194/377 (51%), Gaps = 3/377 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T++Q+  +   L + D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA QV   L        +  AV  GGV +  +   
Sbjct: 62  HLGTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLDA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++  PGRL DHI  + +++S ++ ++LDEAD MLD+GF   I+ IL   P++ 
Sbjct: 122 LRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQD 181

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT    I  LA  + ++ +++ +   N     I +R   V  + + + ++++L
Sbjct: 182 RQTLLFSATFEENIKQLALEFMRNPMQIQVTPSNTVAESITHRVHPVDGARKRDLLLHLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V +
Sbjct: 242 AQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +   ++
Sbjct: 302 ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQI 361

Query: 360 FREANVSVVWEPAPSVE 376
            R     V     P  E
Sbjct: 362 VRMLGRDVEIRDVPGYE 378


>gi|164657065|ref|XP_001729659.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
 gi|159103552|gb|EDP42445.1| hypothetical protein MGL_3203 [Malassezia globosa CBS 7966]
          Length = 560

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +++ G+   +++Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 134 VTTFEETGYPDYIMREINKLGFTEPSAIQSQAWPLALSGRDLVAIAETGSGKTIGFALPS 193

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+AL +APTRELAVQ+  E +   +   V      GGV   ++ 
Sbjct: 194 ILHIKAQAP-LQYGDGPIALILAPTRELAVQIQNECQRFGSACRVRTTSVYGGVPKGQQI 252

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ GA IV+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I++    
Sbjct: 253 RSLQRGAEIVIATPGRLIDMMEIGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVEQIRP 312

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT    +  +A ++  D V+VNI S     +    + + V         +  
Sbjct: 313 DRQTLMFSATWPKEVQRMASDFLNDYVQVNIGSMELAANHNVKQVIEVCTEFDKRGRLIK 372

Query: 239 LRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              H ++     I+F  T+ +    TK L +  +  +A+ G+  Q ER   L+  + G +
Sbjct: 373 HLEHISQENGKVIIFTGTKRAADDLTKFLRQDGWPGLAIHGDKQQDERDWVLREFKSGNS 432

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VA+RG+D+ D+  VI+++  +N E+ +H+ GRTGRAGRKG+++        + 
Sbjct: 433 PIMVATAVASRGLDVKDISYVINSDFPTNTEDYIHQIGRTGRAGRKGVAITFFTSENSKS 492

Query: 356 AER---LFREANVSVVWE 370
           A     + REAN  V  E
Sbjct: 493 ARDLVGILREANQEVPPE 510


>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
           pyogenes M49 591]
          Length = 385

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 130/390 (33%), Positives = 210/390 (53%), Gaps = 7/390 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ Q I  A+   G+   + +QE  +   L  KDV+  AQTG+GKT AFGL   
Sbjct: 1   MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +    +         AL IAPTRELAVQ   EL     + GV V    GG S+ ++ +
Sbjct: 61  NKIRTNENII------QALVIAPTRELAVQSQEELFRFGREKGVKVRSVYGGSSIEKQIK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGRL D I+ K L + H++ ++LDEADEML++GF +DIE I+   P  
Sbjct: 115 ALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILDEADEMLNMGFLEDIEAIISRVPAD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I  +   + KD   V I ++   + ++D   V V   ++ + +  ++
Sbjct: 175 RQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLM 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + +IVF  T+  V   T+ L    F+   + G+L Q +R   ++  ++ +  + +
Sbjct: 235 DVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + +++ +PE+ +HR GRTGRAG+ G S+  +  N       +
Sbjct: 295 ATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGYLSMI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
                  +      + E   +   +  L++
Sbjct: 355 ENLTKKQMKPLRPATAEEAFQAKKKVALKN 384


>gi|118586395|ref|ZP_01543844.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118433182|gb|EAV39899.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 509

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 132/459 (28%), Positives = 219/459 (47%), Gaps = 14/459 (3%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +QE  +   ++  DV+  AQTG+GKT AFGL +   +  +N +     
Sbjct: 3   AVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEEVDPKNPQI---- 58

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL I+PTRELA+Q   EL  L +   V   V  GG  + R+   L+    I+VGTPG
Sbjct: 59  --QALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHPQILVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    ++   +K +V+DEADEML++GF +DIE I+  +P  R+ L+FSAT+   I
Sbjct: 117 RLIDHLNRHTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLLFSATMPDDI 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +   + +D   V+IAS+      +D   V     ++ +A+  +      + AIVF  T
Sbjct: 177 KKIGVKFMEDPEEVHIASKGLTIDLVDQYLVNTREYEKFDAMTRLFDVEQPELAIVFGRT 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V   TK L    ++   + G+L Q  R   L+  + G  +  +ATDVAARG+D+  +
Sbjct: 237 KRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVATDVAARGLDISGV 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
             V + ++  +PE+ +HR GRTGRAG  G+SV  + +        + +  N  +     P
Sbjct: 297 THVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEKLINKRMAALKPP 356

Query: 374 SVEAIRERDAQRILQDPLF------LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
           S E       +    +         +D+++ +  ++ +   AK     +     +     
Sbjct: 357 SAEEAHIARLKNAKAETYAVLGKTTIDNVEDEATEIANQYDAKLIAAALLHALSK--DDE 414

Query: 428 LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              P +I     +  R    D    F+ G  + +  +  
Sbjct: 415 RTRPVDIAQEKPLPRRHSSSDHGHNFRSGRSNGNRGRNG 453


>gi|255656171|ref|ZP_05401580.1| ATP-dependent RNA helicase [Clostridium difficile QCD-23m63]
          Length = 497

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/533 (23%), Positives = 234/533 (43%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L    Y   + VQ  ++   L  ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  E +         AL + PTRELA+QV  E+  +     V  +   G   +  +
Sbjct: 61  LCENINVEYNNI------QALIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + + ++K +++DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRIIDHINKGTIKLENIKYLIIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +      +  
Sbjct: 175 KEKIVGLFSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  +  
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR    G ++ ++ +  +
Sbjct: 295 KFNVLVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       +          +++ +  RI    +  +    +  K V         
Sbjct: 355 KYIENIETYIGYKI--------NELKDIEKSRITHGKILFEEYSKEILKEVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKADKNSYKGKDIKLNTESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKHK 481


>gi|93587673|ref|NP_001035277.1| probable ATP-dependent RNA helicase DDX17 isoform 4 [Mus musculus]
 gi|76364169|sp|Q501J6|DDX17_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17
 gi|63146347|gb|AAH96036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Mus musculus]
          Length = 650

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|40068493|ref|NP_951062.1| probable ATP-dependent RNA helicase DDX17 isoform 1 [Mus musculus]
 gi|74181626|dbj|BAE30078.1| unnamed protein product [Mus musculus]
 gi|74220643|dbj|BAE31531.1| unnamed protein product [Mus musculus]
 gi|148672698|gb|EDL04645.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Mus
           musculus]
          Length = 652

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 413

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 115/367 (31%), Positives = 191/367 (52%), Gaps = 5/367 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI   I  AL E  Y   TS+QE  +   L++ D++ SAQTG+GKT AF + +   
Sbjct: 3   FEELNIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPILQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +N   S +    +L + PTRELA+Q+G         T +   V  GGV+ +++   +
Sbjct: 63  LEKDN---SNSKKIKSLILTPTRELAIQIGESFTTYGKYTSIRNTVIFGGVNQNKQTAAI 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  +++ TPGRL D +    +++  ++  VLDEAD MLD+GF  DI+ ++   P KR+
Sbjct: 120 RNGVDVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRMLDMGFIHDIKKVIAVLPSKRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   I  L++    +  ++ +   +     I         S + + +++IL+ 
Sbjct: 180 SLFFSATMPDTIVELSRKILINPKKIAVTPVSSTAETIQQYLYYTNKSTKKDLLLHILKD 239

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+    R  K L +      A+ G+ +Q +R  AL   +D   RV +AT
Sbjct: 240 SKMDQVLLFDRTKHGADRIVKELKKKNISAAAIHGDKAQNQRQKALTQFKDKEIRVLVAT 299

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  L+ VI+ ++ +  E  +HR GR+GRAG  G+S+ +         + + +
Sbjct: 300 DIAARGIDIDKLQYVINFDIPNVAETYVHRIGRSGRAGEAGVSISLCEPEENDYLKDIEK 359

Query: 362 EANVSVV 368
             N  + 
Sbjct: 360 LINQKIP 366


>gi|260460697|ref|ZP_05808947.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259033274|gb|EEW34535.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 525

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 146/489 (29%), Positives = 223/489 (45%), Gaps = 26/489 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q   +   L  KDVL  AQTG+GKT +F L + +
Sbjct: 2   TFSDLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDVLGIAQTGTGKTASFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV            + +A+ IGGVS   + + 
Sbjct: 62  RLEKGRAR---ARMPRTLILEPTRELAAQVEENFIKYGKNHKLNIALLIGGVSFDEQDKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R
Sbjct: 119 LERGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----VALSDRDNAIV 236
           + L FSAT+ P IT L + +    VRV ++      ++I  R V               +
Sbjct: 179 QTLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNIIQRLVKSGSKPWDKRETLRNL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R
Sbjct: 239 IKAEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  
Sbjct: 299 YLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYI 358

Query: 357 ERLFREANVSVVWE--------------PAPSVEAIRERDAQRILQDPLFL-DSIQGDEK 401
           + + R     + W                AP       R A R   D     +   G E+
Sbjct: 359 DAIERLIGTKIEWHDGDLSTVVASEGEDDAPRRGKGAPRRAGRKDDDRKDRGERKDGGER 418

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR--FRDDSRAFKVGGGS 459
           K      A+H  E   A   + H     A   +  V     R      +++         
Sbjct: 419 KKGGERRARHSEEDAPAVVAQQHEQSDAAETPVADVVERRARKDAIRSENTERKSSDRNE 478

Query: 460 RDNFKGSSW 468
           R   +G + 
Sbjct: 479 RAPERGDTR 487


>gi|198463474|ref|XP_002135506.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
 gi|198151271|gb|EDY74133.1| GA28589 [Drosophila pseudoobscura pseudoobscura]
          Length = 799

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 189/376 (50%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 144 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYVLPAVVH 203

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 204 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +      +     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 263 ERGVEIVIATPGRLIDFLERGTTTLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S     +    + V V        +   +++
Sbjct: 323 VLMWSATWPKEVRQLAEEFLTNYIQVNIGSLTLSANHNILQIVDVCDESEKLGKLIKLLS 382

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 383 DISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 442

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 443 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 502

Query: 358 RL---FREANVSVVWE 370
            L    REAN  +  +
Sbjct: 503 DLIQVLREANQEINPK 518


>gi|47827092|dbj|BAD21122.1| ATP-dependent RNA helicase [Hordeum vulgare subsp. vulgare]
 gi|326532610|dbj|BAK05234.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 154/568 (27%), Positives = 256/568 (45%), Gaps = 41/568 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   ++ ++
Sbjct: 98  LPAQLVATLEKRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPMIKQIIEQD 157

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  +P     P AL +APTRELA QV +E+     K   V     GGVS + ++  L  G
Sbjct: 158 EGRTPGRGRIPRALVLAPTRELAKQVEKEIMESAPKLSTVC--VYGGVSYNTQQNALSRG 215

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D I G  L +  ++ +VLDEAD+ML +GF +D+E IL   P +R+ ++
Sbjct: 216 VDVVVGTPGRLIDLINGGSLQLGEVRYLVLDEADQMLAVGFEEDVETILQQLPAERQSML 275

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ Y  + + ++      E        +   L   S R      I  Y
Sbjct: 276 FSATMPSWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLFAIPLTTTSKRTILSDLITVY 335

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+   +    +         AL G++SQ +R   L   R G+  V +AT
Sbjct: 336 AKGGKTIVFTRTKR-DADEVSLALTTSIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 394

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   N +R  + L R
Sbjct: 395 DVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGNAILMFTTNQRRTVKSLER 454

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-AKHDPEKIAAGF 420
           +      +   P++E + +  A+ ++     +              L  +  P  +A+  
Sbjct: 455 DVGCKFEFIGPPTMEEVLDSSAEHVIATLRGVHPESIQYFVPAAERLSQELGPTALASAL 514

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
              H +G   P     +            +R  +   G          F           
Sbjct: 515 A--HLSGFSQPPSSRSLISHEQGSVTLQLTRDPEYARG----------FF---------S 553

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLK-- 534
            R +   L   S     ++G I +  D        ++  +    L  T++L  G  L   
Sbjct: 554 PRSVTGFLSDVSPSAADAVGKIYLIADERVQGAVFDLPEEIAKDLL-TMELPPGNTLSKV 612

Query: 535 ----YLGGEKPDFRGYKSSGFKSKNSQD 558
                L  + P    Y       + S++
Sbjct: 613 TKLPVLQDDGPATDSYGRFSNSDRGSRN 640


>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
 gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
          Length = 506

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 137/485 (28%), Positives = 222/485 (45%), Gaps = 43/485 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 35  MTKFTDLNLNPKVLKAIYEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 94

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 95  ITLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQD 151

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 152 QLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 211

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     RV +A +     +I+   V+   S +D      
Sbjct: 212 TRQTLFFSATMAPEIERITNTFLSAPERVEVARQATTSENIEQSVVMFKASRKDREGSEK 271

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         N I+FC+ +  V    K L ++ F    + G+L Q +R+  L  
Sbjct: 272 RRVLRTLIEQEGDKLTNGIIFCNRKTDVDIVAKSLKKYGFDAAPIHGDLDQSQRTKTLDG 331

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R+ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +  
Sbjct: 332 FRDGSLRILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITICA 391

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++                   +VE + +++  R+       + ++  E K       
Sbjct: 392 PRDEKAL----------------AAVEDLVKKEIARL------ENPVKKPEPKKRKSNKD 429

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           + D  +IAA  +         PE +          +  D++   K   G      G    
Sbjct: 430 QKDAAEIAADAV-------TKPEPVEKSDTKKHVSKHSDEAPQPKGNRGRGGKQGGRRDD 482

Query: 470 SLSVG 474
            + VG
Sbjct: 483 RVVVG 487


>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
 gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Vibrio angustum S14]
          Length = 497

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 207/470 (44%), Gaps = 7/470 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EA++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--AN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + ++   AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA 
Sbjct: 66  GRPARSNHVRALVLTPTRELAAQVGESVATYGKNLRLSSAVVFGGVKVNPQMLRMRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N+    +      V    + N +  +L     K 
Sbjct: 186 ATFSDEIRELAKGLVNNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNERNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV- 365
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++     +    + R     
Sbjct: 306 GLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLTQQV 365

Query: 366 ---SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
               ++    P+    + +   R ++            ++       K        G  R
Sbjct: 366 FDREIIEGFKPTNALPQSKLDTRPIKPKKPKKQKTFVAREGAATG-EKRSTNNNNGGAKR 424

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
              +     +     +     ++    +R  +       +         +
Sbjct: 425 KPASRRPQGQSTDAANNEKRSEQGARPARKPRNTDAKPQSNGDKPRRRFN 474


>gi|148977043|ref|ZP_01813689.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145963703|gb|EDK28964.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/421 (28%), Positives = 216/421 (51%), Gaps = 5/421 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLN 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G
Sbjct: 66  SGKKASRGTA-RGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   + + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTAATVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++G+ARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G +V  + +  +    ++ +   
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVEKLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDA--QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +     P  E  ++RDA  +++     + +  QG +    D    +   E+  A   R
Sbjct: 365 QRIRRVEQPGYEP-KKRDAYIEKLNTKAAYKNR-QGRKNNANDAPQDQASAERRLAMMKR 422

Query: 423 I 423
           I
Sbjct: 423 I 423


>gi|197285752|ref|YP_002151624.1| ATP-dependent RNA helicase SrmB [Proteus mirabilis HI4320]
 gi|227356264|ref|ZP_03840653.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|194683239|emb|CAR43939.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227163728|gb|EEI48644.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 451

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 191/393 (48%), Gaps = 6/393 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + +  AL E+GY   T++Q   +   +  +D+L SA TG+GKT AF L   
Sbjct: 4   TTFSSLELDESLLTALEEKGYQRPTAIQAEAIPAAMEGRDILGSAPTGTGKTAAFLLPAI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    + S    P  L + PTRELA+QV  + + L A T + +A   GGV+      
Sbjct: 64  QHLLDYPRKKS--GPPRVLILTPTRELAMQVADQAKELCAHTHLDIATITGGVAYMNHAE 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +
Sbjct: 122 VFSENQDIVVATTGRLLQYIKEENFDCRAVEMLILDEADRMLDMGFANDIETIAGETRWR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVN 237
           ++ L+FSAT+             +      A  +R+      +       L  +   + +
Sbjct: 182 KQTLLFSATLEGNAVIDFAQRILNEPVELNADPSRRERKKIQQFYYHADNLDHKTALLAH 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    K +IVF   R  V      L +   +   L GE++Q +R+ A++ +  G+  V
Sbjct: 242 LLKQEEVKKSIVFVRKRERVRELAAALEKQGIKASYLEGEMAQTQRNEAIKRVESGKMHV 301

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+DL D+  V + +L    +  LHR GRTGRAGRKG ++ ++  +      
Sbjct: 302 LIATDVASRGLDLEDITHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDYPLLG 361

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           ++ R     + +     +  + +  +Q+    P
Sbjct: 362 KISRYIQEPIKYRVVAQLRPVTKAPSQKASFKP 394


>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
 gi|167699397|gb|EDS15976.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
           43183]
          Length = 430

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  +   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA+N   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAQNILHNPAEV-KLAVSKPAEKIVQAAYICYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVAKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KSIENFLEKEIYKIPVPE 374


>gi|15965498|ref|NP_385851.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|307302618|ref|ZP_07582374.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|307318465|ref|ZP_07597899.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|15074679|emb|CAC46324.1| Putative ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
 gi|306895805|gb|EFN26557.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306902982|gb|EFN33573.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 499

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 143/479 (29%), Positives = 229/479 (47%), Gaps = 39/479 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L +
Sbjct: 1   MTNFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A  +     +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  
Sbjct: 238 ELIRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 298 KLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKF 357

Query: 356 AERLFREANVSVVW---------EPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKK 402
           ++ + +     V W         EP  S ++ R+R       R  + P     +  D K 
Sbjct: 358 SDAIEKLIGQKVEWFNGDLSELPEPMESHDSRRDRGSDGRKDRKRERP---GKVHADRKP 414

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSR 460
           +        + E +              PE +  V +    D + R + R+ + G    
Sbjct: 415 VTASGNNTEELETV--------------PERVDAVKIERNADSKDRHNGRSDRPGRAQN 459


>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 427

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 200/385 (51%), Gaps = 8/385 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+SE+GY   + +Q+  +   L+ KDVL SAQTG+GKT  F L +   L+  N
Sbjct: 8   LSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHRLI--N 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL + PTRELA Q+   +        +   V  GGV+ + + R L+ G  
Sbjct: 66  NPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I   A +   + V V    EN     +D ++  V  S +   ++  +R      
Sbjct: 186 ATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIREGNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R ++ L +      A+ G  +Q  R  AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++  +       + +     
Sbjct: 306 GLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKLLGEK 365

Query: 367 VV------WEPAPSVEAIRERDAQR 385
           +       ++P  ++  I++  A+ 
Sbjct: 366 LHSEVLEGFQPTDTLAQIKKEAAEN 390


>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
 gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
          Length = 422

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 187/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G+++ ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|322797566|gb|EFZ19610.1| hypothetical protein SINV_13775 [Solenopsis invicta]
          Length = 692

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 222/475 (46%), Gaps = 11/475 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 42  LEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLAD 100

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 101 GDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 160

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 161 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 220

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL ++  K + 
Sbjct: 221 FPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGST 280

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 281 IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARG 340

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ 
Sbjct: 341 LDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAG 400

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P        +A +  D +++     F       ++    +   K   +K A G  
Sbjct: 401 VPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESEAALANEKKKFQKAALGLQ 460

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +    +    S+++ +   R+ ++              S+   L +  +
Sbjct: 461 DSDDEDIENDIDQQIESMLAPKRTVREIAKPTATSITVPGQPIPSATDKLELARR 515


>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 452

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 193/380 (50%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E GY   + +Q+  +   L  KDV+ +AQTG+GKT  F L +   L  +N
Sbjct: 8   LSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++    +   AL + PTRELA Q+   +        +   V  GGV ++ +   L+ G  
Sbjct: 66  NQRVKGNHVRALILTPTRELAAQIQENVFKYSRHQRLTSQVVFGGVKINPQMMKLRKGCD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  + K +    L+ +VLDEAD MLD+GF  DI  IL+  PKKR+ L+FS
Sbjct: 126 VLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRMLDMGFIHDIRKILNLLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++  +N     ++          +   +V ++     + 
Sbjct: 186 ATFSAEIRQLAKGLVNDPVEISVTPQNSTAVTVEQSVYPADKRQKAPMLVELITQGKWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+   +R  + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFCRTKHGANRLAQFLNKAEITAAAIHGNKSQGARTRALSEFKTGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           GID+P L  V++ +L +  E+ +HR GRTGRAG  G +  ++  +        ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFDLPNVAEDYVHRIGRTGRAGEAGKAFSLVEADEASDLFGIERLIQKV 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
                 E     +A+ E   
Sbjct: 366 LPRFTLEGFQPTKALPESKL 385


>gi|228997517|ref|ZP_04157133.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
 gi|228762256|gb|EEM11186.1| ATP-dependent RNA helicase [Bacillus mycoides Rock3-17]
          Length = 433

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 200/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E+E +      +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P
Sbjct: 115 MRKLKGNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSAT+   I  LAK Y K+   + I S     ++I  R +      + +A+ +
Sbjct: 175 ESKQTMLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    +   +
Sbjct: 295 LIATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGESGLAITFVAPKDEMYLK 354

Query: 358 RLFREANVSVVWEPA 372
            + +    ++  +  
Sbjct: 355 EIEKGIGATLQRQEL 369


>gi|221483330|gb|EEE21649.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
 gi|221507816|gb|EEE33403.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 550

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 183/376 (48%), Gaps = 9/376 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L    
Sbjct: 130 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 189

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+    +    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +
Sbjct: 190 HINAQ-PYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIME 248

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R
Sbjct: 249 LERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR 308

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVN 237
           + LM+SAT    +  LA++  K+                +      V+     R   +  
Sbjct: 309 QTLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSL 368

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R       ++F  T+      T+ +    +  ++L G+  Q+ER+  L   ++GR  +
Sbjct: 369 LRRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPI 428

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQR 354
            +ATDVA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAG KG +      +   + R
Sbjct: 429 MVATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLAR 488

Query: 355 RAERLFREANVSVVWE 370
              R+ R AN  V  E
Sbjct: 489 ELVRVLRGANQPVPPE 504


>gi|237839461|ref|XP_002369028.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211966692|gb|EEB01888.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
          Length = 550

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 183/376 (48%), Gaps = 9/376 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L    
Sbjct: 130 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 189

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+    +    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +
Sbjct: 190 HINAQ-PYLNKGDGPIVLILAPTRELVEQIRAQCRTFAASSKIHHAVAYGGVPKRPQIME 248

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R
Sbjct: 249 LERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR 308

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVN 237
           + LM+SAT    +  LA++  K+                +      V+     R   +  
Sbjct: 309 QTLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQEYEKRGQLMSL 368

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R       ++F  T+      T+ +    +  ++L G+  Q+ER+  L   ++GR  +
Sbjct: 369 LRRIMDGSKILIFAETKRGADNLTRDMRVEGWPALSLHGDKKQEERTWVLDEFKNGRNPI 428

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQR 354
            +ATDVA+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAG KG +      +   + R
Sbjct: 429 MVATDVASRGLDVKDIRHVINYDMPNQIEDYIHRIGRTGRAGAKGCAYTFFTPDKPRLAR 488

Query: 355 RAERLFREANVSVVWE 370
              R+ R AN  V  E
Sbjct: 489 ELVRVLRGANQPVPPE 504


>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
 gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
          Length = 412

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +     +  A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +
Sbjct: 1   MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + V    GG+S     
Sbjct: 61  IQHL-QDFPRKRPGPA-RILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      
Sbjct: 119 EMLGKTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEADRMLDMGFGKIVERLNHECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT     +   ++    + V VN     R+   I    +     D   A++ 
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLALLE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  I+F  TR  +      L         + GE++Q  R+N +   RDG   V
Sbjct: 239 NIIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ +L    E  +HR GRT RAG+KG ++ ++  + Q   E
Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQNMIE 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RISRYMKEEVQE 370


>gi|294894930|ref|XP_002775023.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239880806|gb|EER06839.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 647

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +P  I   + + G+V+ T +Q       L  +D++  A+TGSGKT+AF L  
Sbjct: 198 ITQFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPA 257

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELA+Q+  E +     + +    C GGV    + 
Sbjct: 258 VVHINAQ-PYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQA 316

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNG  I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+     
Sbjct: 317 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 376

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LM+SAT    +  LA++   +        ++        + V V   +  +  +  
Sbjct: 377 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQA 436

Query: 239 LRY--------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L               A++F  T+      T+VL    +  +++ G+  Q ER   L   
Sbjct: 437 LMRAVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEF 496

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR  + IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +      
Sbjct: 497 KSGRMPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTA 556

Query: 351 NMQRRAER---LFREANVSVVW 369
           +  + A+    + REA+  V  
Sbjct: 557 DKAKLAKPLIGILREASQPVPE 578


>gi|90413176|ref|ZP_01221172.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
 gi|90325867|gb|EAS42319.1| putative ATP-dependent RNA helicase SrmB [Photobacterium profundum
           3TCK]
          Length = 419

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 188/372 (50%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +     +  A+ E GY   T VQ   +   L  +DVL SA TG+GKT AF L +
Sbjct: 1   MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGTGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +  R  P  A   L + PTRELA+Q+      L   T + +    GG+S     
Sbjct: 61  IQHLL-DFPRKKPGPA-RVLILTPTRELAIQIADHARALAKNTHLKIFTITGGISYDDHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL +++  +  +   ++ ++LDEAD MLD+GF   ++ I      
Sbjct: 119 ELLGKTQDIVVATPGRLMEYVESERFDCRAIECLILDEADRMLDMGFTKIVDRINHECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT     +   ++   K+ V VN A   R+   I    +         A++ 
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILKEPVEVNSAPSRRERKKIHQLYLRCDDMGHKLALLE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  H A+ +IVF  TR  ++     LA    +   + GE++Q  R+NA+   RDG   +
Sbjct: 239 QILKHQAERSIVFVKTRDRLATLRDQLASMNVKCSWIQGEMAQLSRNNAIARFRDGDVNI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG+++ ++  + Q   E
Sbjct: 299 LIATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVEAHDQAMIE 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RVSRYMEEEVPE 370


>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 441

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|15677281|ref|NP_274434.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|7226661|gb|AAF41783.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
 gi|316985805|gb|EFV64748.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
 gi|319410671|emb|CBY91048.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
           2594]
 gi|325128474|gb|EGC51354.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           N1568]
 gi|325130493|gb|EGC53250.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           OX99.30304]
 gi|325136534|gb|EGC59138.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M0579]
 gi|325140373|gb|EGC62894.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           CU385]
 gi|325199961|gb|ADY95416.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           H44/76]
          Length = 457

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 136/411 (33%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|307823522|ref|ZP_07653751.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735507|gb|EFO06355.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 462

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 213/400 (53%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E +   GY +LT +Q   L   L  +DV+  A+TGSGKT AFG+ L S L   +
Sbjct: 11  LKPALLENIESLGYTHLTPIQAESLPHILEGRDVIAQAKTGSGKTAAFGIGLLSKLDLNS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R        A+ + PTRELA QV +E+  L   T  +  +   GGV    +R  L++G 
Sbjct: 71  FRV------QAMVVCPTRELADQVCKEIRRLARFTQNIKVLTLCGGVPFGPQRASLEHGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGRL +H+  + L +S+LK +VLDEAD MLD+GF + I  ++  +P  R+ L+F
Sbjct: 125 HVVVGTPGRLQEHLGKRSLRLSNLKVLVLDEADRMLDMGFEEAITDVISYAPTHRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +  I  +++ + +          +   SDI+ R   V  S R NA+  +L Y+  +
Sbjct: 185 SATYTDPIREISQKF-QFKPVSVSIETSHHDSDIEQRFYQVEKSKRTNALGYLLSYYRPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+         L    F V AL G+L Q++R   L    +    V +ATDVAA
Sbjct: 244 STVVFCNTKRDCQDVASSLENSGFTVQALHGDLEQKDRDQVLVRFSNKSCSVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D++ VI+ +L  +PE  +HR GRTGRAG+KG+++ +  +    R + +    N 
Sbjct: 304 RGLDIKDMQAVINYDLPWDPEIYVHRIGRTGRAGKKGLALSLCTEQELNRVKAIEEYQNT 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              W+      A  +   ++  + P+    I G  K  V 
Sbjct: 364 PAKWDEV----APFQMSHEQRFEPPMVTLWIDGGRKNKVR 399



 Score = 68.5 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            +          +  G K K     ++  L   +GI    +G I +     +V +  D V
Sbjct: 378 EQRFEPPMVTLWIDGGRKNKVRPGDILGALTGDAGIAGSEVGKIDIFDAHAYVAIKRDSV 437

Query: 519 DLLRRTVKLDK 529
           D     ++  K
Sbjct: 438 DKALACLRNGK 448


>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 116/355 (32%), Positives = 189/355 (53%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   +++Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 12  LSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLEIL--SK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA QV   ++       +   V  GGV ++ +   L+ GA 
Sbjct: 70  GENAQSNQVRALVLTPTRELAAQVAESVKNYGQHLSLKSTVVFGGVKINPQMMALRRGAD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGR+ D    K +    L+ +VLDEAD MLD+GF  DI+ IL   PKKR+ L+FS
Sbjct: 130 ILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQNLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    + + +++   N     ++     V    +   ++ ++       
Sbjct: 190 ATFSPEIRQLAKGLVNNPIEISVTPRNATAVSVEQWLHPVDKKRKTELLIQLIADGRWDQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   ++ TK L +   +  A+ G  SQ  R+ AL   ++GR R+ +ATD+AAR
Sbjct: 250 ALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRIRILVATDIAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++  +   +   + R
Sbjct: 310 GLDIEQLPHVVNFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRAIER 364


>gi|114771836|ref|ZP_01449229.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
 gi|114547652|gb|EAU50543.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium HTCC2255]
          Length = 461

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 208/427 (48%), Gaps = 16/427 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     + +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT  F L +
Sbjct: 1   MKKFIDLGLSPKVMKAINDVGYDTPTPIQSEAIPHALEGRDVLGIAQTGTGKTAGFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L +APTRELA QV    E       + +A+ IGGVS   + 
Sbjct: 61  IHKLARGRAR---ARMPRSLVLAPTRELAAQVAENFEQYAKYVKLDMALLIGGVSFKDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 RLIDRGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFKLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  + + + ++   V +A +     +I    +     +R       
Sbjct: 178 TRQTLFFSATMAPEINRITQEFLQNPKLVEVARQATTSENITQNVICFKAENRKLEAKKK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         N IVFC+ +  V    K L +H   V A+ G+L Q+ R   L  
Sbjct: 238 RDLLRTIIKDEGEKLTNGIVFCNRKVDVDIVMKSLKKHGHSVGAIHGDLDQRYRMEVLAG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            ++    + +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FKNNDITLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRKGWAFMLCL 357

Query: 350 QNMQRRAERLFREANVSVV--WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
            +  +  +++       +       P ++    +   + +   +  + ++  ++   +  
Sbjct: 358 PHEIKHLDKIEELVKQPIPRLEVELPKLKKQENKSRVKNIDTKIETNPLKKKQENKEEKS 417

Query: 408 LAKHDPE 414
            AK +P+
Sbjct: 418 EAKSNPK 424


>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 549

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/366 (33%), Positives = 192/366 (52%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLSKGN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A    AL + PTRELA QV   +E       +  AV  GGV ++ + + L++G  
Sbjct: 68  K--AKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKLRHGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D ++   +  + L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      V +++   N   + +      V  + +   ++ +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQEDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIERLINRV 365

Query: 367 VVWEPA 372
           +  +  
Sbjct: 366 LERQEI 371


>gi|134034065|sp|A2QC74|DBP2_ASPNC RecName: Full=ATP-dependent RNA helicase dbp2
 gi|134056301|emb|CAK37534.1| unnamed protein product [Aspergillus niger]
          Length = 565

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 136 VETFDEAGFPQYVLSEVKAQGFDRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 195

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 196 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 254

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 255 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 314

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 315 DRQTCMWSATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 374

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  + A   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 375 HLEKIMENRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 434

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  +
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSK 494

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 495 QARDLVTILTEAKQQI 510


>gi|332031410|gb|EGI70923.1| Putative ATP-dependent RNA helicase DDX46 [Acromyrmex echinatior]
          Length = 1013

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 222/475 (46%), Gaps = 11/475 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 363 LEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLAD 421

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 422 GDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 481

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 482 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 541

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL ++  K + 
Sbjct: 542 FPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGST 601

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 602 IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARG 661

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ 
Sbjct: 662 LDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAG 721

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P        +A +  D +++     F       ++    +   K   +K A G  
Sbjct: 722 VPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESEAALANEKKKFQKAALGLQ 781

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +    +    S+++ +   R+ ++              S+   L +  +
Sbjct: 782 DSDDEDIENDIDQQIESMLAPKRTVREIAKPTATSVTVPGQPIPSATDKLELARR 836


>gi|83953760|ref|ZP_00962481.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
 gi|83841705|gb|EAP80874.1| DEAD/DEAH box helicase [Sulfitobacter sp. NAS-14.1]
          Length = 444

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 208/382 (54%), Gaps = 3/382 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 12  MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHGMNGRDVMGLAQTGTGKTAAFGIPL 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 72  VAQMLEREARPEPRT-VRGLVLAPTRELANQIMENLKGFCEGTQLKTMMIVGGQSINPQI 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 131 KRMERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIAAVLPK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    I      +A +++ + ++ +
Sbjct: 191 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKITQEVHFIAKAEKKSLLIEL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 251 LGKHTEERALVFGRTKHGCEKLMKDLVKAGFKAASIHGNKSQGQRDRAIESFKKGEVTVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++     +     + 
Sbjct: 311 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 370

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           + +   +S+        EAI E
Sbjct: 371 IQKTMKISIPVASGRPWEAIDE 392


>gi|221134107|ref|ZP_03560412.1| DEAD/DEAH box helicase domain-containing protein [Glaciecola sp.
           HTCC2999]
          Length = 442

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 198/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M   F ++     + +A+S++GY   + +Q+  + P L  +DV+ +AQTG+GKT AF L 
Sbjct: 1   MTTSFSDLGLSPAVLQAVSDQGYTQPSPIQQQAIGPVLDGQDVMAAAQTGTGKTGAFALP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + + L   + R SP +   AL + PTRELA QV   ++     T +   V  GGVS++ +
Sbjct: 61  IVNLLSETSKRPSPNN-IKALILTPTRELAAQVAESVKACAQHTQLRSMVVFGGVSINPQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  I++ TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ I+   P
Sbjct: 120 MQGLRRGCDILIATPGRLLDLHQQNAVKFSQLEILVLDEADRMLDMGFIHDIKRIMKLIP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT S  I  LAK + ++ + +++  +N     +    V    S +   ++ 
Sbjct: 180 AKRQTLLFSATFSDPIRELAKQFTQEPIEISVTPKNSTTPLVKQLLVHAEKSSKTTLLIK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ +  +  +VF  T+   +R  + L        A+ G  SQ  R+ AL   + G  RV
Sbjct: 240 LIKDNDWQQVLVFTRTKHGANRIAQKLGNKNITAAAIHGNKSQGARTKALADFKSGDVRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  L  VI+ +L   PE+ +HR GRTGRAG  G +V        ++  
Sbjct: 300 LVATDIAARGIDIDQLPNVINYDLPHVPEDYVHRIGRTGRAGATGHAVSFATNEDIKQLN 359

Query: 358 RLFREANVSVV 368
            +       + 
Sbjct: 360 DIQNLIGEHIE 370


>gi|291389880|ref|XP_002711450.1| PREDICTED: DEAD box polypeptide 17 [Oryctolagus cuniculus]
          Length = 835

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 281 NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 340

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 341 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 399

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 400 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 459

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 460 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 519

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 520 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 579

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 580 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 639

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 640 VLEEANQAINPK 651


>gi|332704265|ref|ZP_08424353.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554414|gb|EGJ51458.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 529

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 141/468 (30%), Positives = 220/468 (47%), Gaps = 17/468 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
             E +P ++ EALS  G+ +L  VQ   +   +   D++V ++TGSGKT AF L +   +
Sbjct: 45  TLEMLPPLLREALSRAGWTSLMPVQAKSMPIIMGGHDLMVQSRTGSGKTGAFVLPILERI 104

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     +A  AL + PTRELA QV  E E L       V    GGVS  ++    +
Sbjct: 105 DPN------LAATQALVLVPTRELARQVAHEAEVLVGD-RARVVAVYGGVSFGKQVEGFK 157

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVVGTPGR+ DH+     N+  L+A++ DEAD ML +GF  D++ +    PK+R  
Sbjct: 158 AGAHIVVGTPGRILDHLLRHNFNLQELRALIFDEADRMLSIGFYPDMKQVQRYMPKRRVN 217

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY- 241
               +   PA             ++   S  + H       +           +  +   
Sbjct: 218 TFMFSATYPAFVMRLAGEFMHKPQMLSLSSKQVHVAEVQHVIYEVPRMGRERCLMRIIEV 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A +FC+T+A V   + VLA   +    L+G+LSQ +R + L  +R G  R+ ++T
Sbjct: 278 ENPTSAFIFCNTKAQVEYVSTVLANFGYDADGLTGDLSQSKRESILDRVRAGSLRLLVST 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  VI  E   +PE+ +HR+GRTGRAG  G  + ++    +   +RL +
Sbjct: 338 DVAARGIDIPDLSHVIMYEPPEDPESYIHRAGRTGRAGASGEVITLVDVIQKLEMQRLAK 397

Query: 362 EANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKM----VDVLLAKHDPE 414
              + +V  P P+ E +R   ++R   +L+  L        E+ M    +   L K++ E
Sbjct: 398 RFTIDLVSRPLPTDETVRSVASERVTALLESTLRARPPLKQERMMRFMPLAQELGKNEEE 457

Query: 415 -KIAAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
             I A  L   ++  L +P E+  +   + R              G  
Sbjct: 458 LAIIAMLLDDYYQQTLHSPPELPDIRQSTPRTEPVTGHEPASAREGDE 505


>gi|221640283|ref|YP_002526545.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides KD131]
 gi|332559285|ref|ZP_08413607.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
 gi|221161064|gb|ACM02044.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           KD131]
 gi|332276997|gb|EGJ22312.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides
           WS8N]
          Length = 453

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 208/455 (45%), Gaps = 5/455 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + + + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L
Sbjct: 1   MADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL       P +   AL +APTREL  Q+   LE     T V V    GG S++R+ 
Sbjct: 61  LHRLLGVGHPPPPRT-IRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  GA I+V TPGRL D +    + + H   +VLDEAD+MLD+GF   +  I    P 
Sbjct: 120 ERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPL 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA  Y ++ V+V +A   +    I          D+   + + 
Sbjct: 180 KRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESY 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H  + A+VF  T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V 
Sbjct: 240 LQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + ++ + PEN +HR GRT RAG +G +V  +          
Sbjct: 300 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 359

Query: 359 LFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     + V   AP    I    A R  Q P      +   K             + A
Sbjct: 360 VEKLLKQPIPVIGGAPWAADIVAA-APRPGQKPRQGGRPKTGAKPQGKPQAKAQPKPQGA 418

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
           A           AP         +   R  D +R 
Sbjct: 419 AKAHPRAGRPAGAPGGHAAPKRAARGPRRGDAARG 453


>gi|77464394|ref|YP_353898.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388812|gb|ABA79997.1| DEAD/DEAH box helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 208/455 (45%), Gaps = 5/455 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + + + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L
Sbjct: 9   MADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPL 68

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL       P +   AL +APTREL  Q+   LE     T V V    GG S++R+ 
Sbjct: 69  LHRLLGVGHPPPPRT-IRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQT 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  GA I+V TPGRL D +    + + H   +VLDEAD+MLD+GF   +  I    P 
Sbjct: 128 ERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPL 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA  Y ++ V+V +A   +    I          D+   + + 
Sbjct: 188 KRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESY 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H  + A+VF  T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V 
Sbjct: 248 LQKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + ++ + PEN +HR GRT RAG +G +V  +          
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 367

Query: 359 LFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     + V   AP    I    A R  Q P      +   K             + A
Sbjct: 368 VEKLLKQPIPVIGGAPWAADIVAA-APRPGQKPRQGGRPKTGAKPQGKPQAKAQPKPQGA 426

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
           A           AP         +   R  D +R 
Sbjct: 427 AKAHPRAGRPAGAPGGHAAPKRAARGPRRGDAARG 461


>gi|124267275|ref|YP_001021279.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
 gi|124260050|gb|ABM95044.1| putative ATP-dependent RNA helicase 1 [Methylibium petroleiphilum
           PM1]
          Length = 453

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 195/379 (51%), Gaps = 3/379 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + + +A+ + GY   T +Q+  +   +   D+L  AQTG+GKT  F L + 
Sbjct: 1   MSFKELGLAEPLLQAIVDAGYETPTPIQKQAIPAVMLGGDLLAGAQTGTGKTAGFVLPML 60

Query: 60  STLLAEND-RFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L+A    + +   +P+ AL + PTRELA QV   +        +   V  GGV +  +
Sbjct: 61  HRLMARPAVKDARGKSPVRALILTPTRELAAQVEESVRIYGKHAKLSSMVMFGGVGMQPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL DH + + L++SH++  VLDEAD MLD+GF  DI+ +L   P
Sbjct: 121 IDRLKRGVDILVATPGRLLDHHQQRTLDLSHVEIFVLDEADRMLDMGFIHDIKKVLAIVP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+++ L+FSAT S  I TLA         + +A  N     I  +   V    +   + +
Sbjct: 181 KQKQSLLFSATFSDEIKTLADRLLNSPQVIEVARRNSTVETIAQKIHPVDRDKKKELLAH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++       +VFC  +   +R T+ L +     +A+ G  SQ  R+ AL   + G  +V
Sbjct: 241 LIKSQDWHQVLVFCRMKHGANRLTEYLNDQRITAMAIHGNKSQTARTKALADFKSGALQV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG  G +V ++  +      
Sbjct: 301 LVATDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGALGEAVSLVCVDEDGFLR 360

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +    S+  E  P  E
Sbjct: 361 DIEKLIKRSIPREVVPGFE 379


>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 431

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 200/391 (51%), Gaps = 7/391 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I  AL+E GY  LT +Q+  +    R  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQIL- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  +        AL +APTRELA Q+ + +      T +  A   GG  +  + R L+ G
Sbjct: 65  DKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTLEKG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+  K +++++++ +V DEAD MLD+GF  D+  ++       +++M
Sbjct: 125 VDILVATPGRLIEHVDLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+ +  EN     + +    V    +   +  ++     
Sbjct: 185 FSATSSKQMNALASDILRKPKRIMVDRENTTADTVAHVVYPVDQERKRELLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L +   + V   G+ +Q  R  AL   ++G+ARV +AT+VA
Sbjct: 245 KQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ ++    E+ +HR GRTGRAG KG ++  + +  +    ++ +   
Sbjct: 305 ARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLVQVEQLIG 364

Query: 365 VSVV------WEPAPSVEAIRERDAQRILQD 389
             +       +EP      +++ + +   +D
Sbjct: 365 QRIHRVQLLGYEPTNRDAFVQKMNTKAAFKD 395


>gi|119178046|ref|XP_001240731.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118575172|sp|Q1DP69|DBP2_COCIM RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 542

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 124 VETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 184 IVHINAQ-PLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++V I S+    N + + I          DR   
Sbjct: 303 DRQTCMWSATWPKEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDFEKRDRMIN 362

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 363 HLERIMDDKKSKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 422

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 482

Query: 355 RAER---LFREANVSV 367
           +A     +  E+   +
Sbjct: 483 QARDLVNILTESKQQI 498


>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 403

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 179/366 (48%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ +  YV  T +Q   +   L+  DV+ SAQTG+GKT AF L +   L    
Sbjct: 10  LQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQRLSTHG 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA+QV          T + V +  GGV   ++  DL+ G  
Sbjct: 70  R-------LRCLILEPTRELALQVEEAFHKFAKFTDLRVTIVYGGVGYGKQTSDLKRGMD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+  TPGRL DH+     ++  ++ +VLDE D MLD+GF  D+  I+   PK R+ L FS
Sbjct: 123 ILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRMLDMGFLPDVRKIVQRCPKARQTLFFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +  LA     +  +V I         + +    V  S + + +  +L     K+
Sbjct: 183 ATLPPELEQLAGWALHNPTKVEIGRVRSPAETVSHGFYPVVASQKFDLLQLLLERTEFKS 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC TR    R    L      V  +  + SQ+ER  AL   + G+  V +ATD+AAR
Sbjct: 243 VLIFCRTRMGADRIAHRLKTKGHTVGVMHSDRSQRERIEALDGFKSGKFEVLVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI+ ++  NPE+ +HR GRTGRA   G +  ++ +   R A  + R   ++
Sbjct: 303 GLDIAGVSHVINYDVPENPEDYVHRIGRTGRAHHTGDAFTLVTEEDVRDARSIERYMGMA 362

Query: 367 VVWEPA 372
           V  +  
Sbjct: 363 VERKKV 368


>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
          Length = 433

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 199/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E+E +      +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P
Sbjct: 115 MRKLKGNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSAT+   I  LAK Y K+   + I S     ++I    +      + +A+ +
Sbjct: 175 ESKQTMLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQGIIETTDRTKQDALRH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    +   +
Sbjct: 295 LIATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLK 354

Query: 358 RLFREANVSVVWEPA 372
            + +    ++  +  
Sbjct: 355 EIEKGIGATLQRQEL 369


>gi|229005142|ref|ZP_04162865.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
 gi|228756117|gb|EEM05439.1| ATP-dependent RNA helicase [Bacillus mycoides Rock1-4]
          Length = 433

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 200/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGIAEATPIQEKAIPVVMAGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E+E +      +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIEKMLVHQENINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P
Sbjct: 115 MRKLKGNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSAT+   I  LAK Y K+   + I S     ++I  R +      + +A+ +
Sbjct: 175 ESKQTMLFSATMPKDIKKLAKRYMKEPEMIQIQSAEVTVNNIKQRVIETTDRAKQDALRH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L  + +    L G+LSQ +R   ++  RD + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFRDAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    +   +
Sbjct: 295 LIATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMYLK 354

Query: 358 RLFREANVSVVWEPA 372
            + +    ++  +  
Sbjct: 355 EIEKGIGATLQRQEL 369


>gi|163732038|ref|ZP_02139484.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
 gi|161394336|gb|EDQ18659.1| ATP-dependent RNA helicase, putative [Roseobacter litoralis Och
           149]
          Length = 504

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 192/383 (50%), Gaps = 13/383 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N+   + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT +F L + 
Sbjct: 22  IKFSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMI 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + +
Sbjct: 82  TLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDK 138

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P  
Sbjct: 139 LIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFT 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN------ 233
           R+ L FSAT++P I  +   +     RV +A +      I+   +    S +D       
Sbjct: 199 RQTLFFSATMAPEIERITNTFLSAPERVEVARQATASETIEQGVLKFKASRKDREGTEKR 258

Query: 234 ---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L   
Sbjct: 259 KLLRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLKKYNYDAAPIHGDLDQSQRTRTLDGF 318

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RDG  +  IA+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +   
Sbjct: 319 RDGSLKFLIASDVAARGLDVPAVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAIMICVP 378

Query: 351 NMQRRAERLFREANVSVVWEPAP 373
             +R  E + R     +     P
Sbjct: 379 RDERNLEDIERLVQREIPRLDNP 401


>gi|325280488|ref|YP_004253030.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324312297|gb|ADY32850.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
           20712]
          Length = 432

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 118/450 (26%), Positives = 202/450 (44%), Gaps = 24/450 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + I  AL + G+   T +QE         KDV+  AQTG+GKT+A+ + L 
Sbjct: 1   MTFNELNISKQILMALEDAGFEQPTPIQERAFPVIRSGKDVIGIAQTGTGKTLAYLIPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L          + P AL I PTREL VQV   +E L     +      GG ++  ++ 
Sbjct: 61  MKLHYAQ-----GNYPRALVIVPTRELVVQVCESVELLTEYMDIRCVGIYGGTNIRTQQA 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  ++V TPGR  D      +    +K VV+DEAD ++D+GF   +  IL+  P+K
Sbjct: 116 AVYEGVDLLVTTPGRFMDIYMNGIIRTPQIKTVVVDEADRLMDMGFMPQLRSILEVVPEK 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI- 238
            + L+FSAT S  I  LA  +                 ++  +      + +    +   
Sbjct: 176 HQTLLFSATFSTTIAELAAEFLAPEPVRIETGNPTTPVELVTQLRYDLPNIQTKINLLKL 235

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRA 295
                   +  ++F  T+ +  R  + L +H    +++     +Q  R NAL++ ++G+ 
Sbjct: 236 LLTDKEEFRRVMIFTETKKNADRIVERLGDHWKGELSVLHSNKAQNSRLNALKVFKEGKT 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +++DVAARGID+ D+  VI+ ++ S PE  +HR GRT RAG++G ++  + +  + +
Sbjct: 296 RIMVSSDVAARGIDVQDVSHVINFDIPSIPEEYIHRIGRTARAGKEGTAISFVTEKEEPK 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            E + +     V W   P              ++ +  D +  DEK     ++ +    K
Sbjct: 356 FEEIEKLIGQQVEWAALP--------------ENLVISDVLLDDEKVQTSNIVYQKGKPK 401

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
               F          P+++       GR +
Sbjct: 402 GGGAFHAKSAKNSKTPQKVRKDRTKEGRRK 431


>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
 gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
          Length = 543

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 218/473 (46%), Gaps = 25/473 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   L+ +G    T+VQE  +   L  +D++  AQTG+GKT+AF L +   +   N
Sbjct: 29  ISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPILEKIDPSN 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                  +  AL + PTRELA+Q+  E++ L      +  +   GG  V ++   LQ   
Sbjct: 89  G------STQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDVEKQLHKLQRQT 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH+R   + +  +  +VLDEAD+ML +GF +++E I+  +P  R+ ++F
Sbjct: 143 QIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHIGFLNEMELIISQTPASRQTMLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L+K + K+   + I         I+  A+      + NA+++ +R     
Sbjct: 203 SATMPDDIRKLSKKHLKEPESIRIEKTFVPEKAIEQLAIFTTDRAKQNALISRIREDRPF 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T    ++    L    F    L G+L+Q +R   ++  R+   +  IATDVAA
Sbjct: 263 LAIIFCRTIRRATKLYDALKSQRFSCEELHGDLTQAKREKVMKKFRNAEIQFLIATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG+ G++V    +  +   + + +E N+
Sbjct: 323 RGLDVEGVTHVYNYDIPQDSESYVHRIGRTGRAGKDGLAVTFYAEKDEAALKAIEQELNI 382

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +  E + +                    +  G++    D    + D ++ A G     R
Sbjct: 383 RLPKEESTATANT----------------TADGEKSSSGDKPKNRSDRDRRAGGAESRRR 426

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            G       +     +     R+ S   +   G   ++          G +  
Sbjct: 427 TGGRTEGRGSREVRSTRSGERRNRSSEGRRADGEIRSYTHDE--RRENGRRSG 477


>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
 gi|156862187|gb|EDO55618.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
          Length = 428

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 193/378 (51%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   PA A   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA N   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAGNILNNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + + +  +  +   P P 
Sbjct: 357 KNIEKFLDRDIYKIPVPE 374


>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 429

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L  TLL + 
Sbjct: 8   LPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLL-TLLEKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R  P +   AL + PTRELA QV   +        +  AV  GGV ++ + + L+ G  
Sbjct: 67  NRPKP-NQVRALVLTPTRELAAQVHASVATYGKNMPLRSAVVFGGVKINPQMQILRQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      ++   L+ ++LDEAD MLD+GF  DI+ IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLIDLYNQNAVSFKQLEVLILDEADRMLDMGFIHDIKRILAVLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    + V ++++  N    ++      V  + +   +  +++ +  + 
Sbjct: 186 ATFSPDIRRLAKGLVNNPVEISVSPRNTTAENVTQTVYEVDKTKKSIVLSTLIKQNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   ++G+ R  +ATD+AAR
Sbjct: 246 VLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++     +  + + +     
Sbjct: 306 GIDIDQLPQVVNFDLPHVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKDIEKLIKKV 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 IPRKILAGFE 375


>gi|255009347|ref|ZP_05281473.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
 gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
          Length = 418

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 188/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NRL---SEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   
Sbjct: 118 QKKGLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     + V V   + ++    I   A +   + +   + 
Sbjct: 178 PKERQTIMFSATMPSKIQQLANTILNNPVEV-KLAVSKPAEKIVQAAYVCYENQKLGIVR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEEVPERVIIFASSKLKVKEVAKALKMMKLNVGEMHSDLEQAQREFIMHEFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P PS
Sbjct: 357 KNIENFLEKEIYKIPVPS 374


>gi|86357880|ref|YP_469772.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86281982|gb|ABC91045.1| ATP dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 527

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 140/468 (29%), Positives = 215/468 (45%), Gaps = 25/468 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 23  LTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 82

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 83  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 139

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 140 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A        +  R           R    
Sbjct: 200 TRQTLFFSATMPPEIQKLADRFLQNPERIEVARPASAAKTVTQRFVASHSKDYEKRAVLR 259

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 260 ELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFNVGALHGDMDQRSRTMMLQNFRDGNL 319

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 320 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 379

Query: 356 AERLFREANVSVVWEP-----APSVEAIRERDAQR------------ILQDPLFLDSIQG 398
            + + +     V W        P  E   + D  R              +D       + 
Sbjct: 380 VDAIEKLIGEKVEWLNGDLNSLPPAEESADSDRPRRNSRERGAKGERGERDRGRGRGNRS 439

Query: 399 DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
                 D  +   D + IAA   +          E  P +       +
Sbjct: 440 AAGHKSDNDIQDSDVQVIAAAPAKAEVVKNERKAEQKPQNNARNNRPY 487


>gi|225849264|ref|YP_002729428.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644065|gb|ACN99115.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 397

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 203/375 (54%), Gaps = 12/375 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   Q   ++L + GY   T +QE  +   L  KD++  AQTG+GKT AFG+ + 
Sbjct: 4   KTFKDLGISQETLKSLEDLGYSKPTEIQEKAIPAVLSGKDLVAQAQTGTGKTAAFGIPIV 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++  +  +        AL + PTRELA+QV +E++ L     V V    GG S+  +  
Sbjct: 64  ESVNTKQKKI------QALVLVPTRELAIQVAKEIKDLGKNKKVFVLSVYGGKSMKHQID 117

Query: 120 DLQNGAHIVVGTPGRLC-DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+ G  +V+        D +    L + ++K  VLDEAD ML++GF +DIE I+   P+
Sbjct: 118 FLKKGNDVVIVGTPGRVKDLLERGFLKLDNVKMFVLDEADRMLEMGFIEDIEDIMSYLPE 177

Query: 179 KRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT+   I     +   +D   + +  +      I      V   ++ N ++ 
Sbjct: 178 DRQNLLFSATMPKEILELAQEFLNEDYQTIKVKPDEITVEKIKQIIYRVDPKNKFNKLIE 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  + A+  I+F  T+    + ++ L++  F V A+ G+ SQ++R   L   R G+ ++
Sbjct: 238 VLSQNQAEKTIIFTQTKLEADQLSEDLSKEGFSVSAIHGDFSQKKRETVLHNFRTGKLKI 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +ELVI+  L  N E+ +HR GRTGRAG++G ++ +   +  +  +
Sbjct: 298 LVATDVAARGLDIKGVELVINYGLPKNAESYVHRIGRTGRAGKEGTAISIPTPSEDKYLQ 357

Query: 358 RLFR--EANVSVVWE 370
           ++ +  +AN+ V+ E
Sbjct: 358 QILQKTKANIEVINE 372


>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
          Length = 408

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHTFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRGARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   PKKR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPKKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     +  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R    
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 368 EISQEVIAGFE 378


>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
 gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
          Length = 426

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +AL E+GY   + +Q   +   +  +DV+ +AQTG+GKT  F L +   L    
Sbjct: 22  LSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLERLNHGA 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   +        +   V  GGV ++ + + LQ G  
Sbjct: 82  RPGRLQI--RALVLTPTRELAAQVLASVREYSKYLQLTSDVVFGGVKINPQIQRLQKGVD 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D ++   +    ++ +VLDEAD MLD+GF  DI  ++   P +R+ LMFS
Sbjct: 140 VLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIHDIRRVISRLPDRRQTLMFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA       V++ +A  N+    ++       ++ + + + +++R      
Sbjct: 200 ATFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQVVHPCDMARKVDLLSHLIRSGEWLQ 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L++      A+ G  SQ  R+ ALQ  +DG  RV +ATD+AAR
Sbjct: 260 VLVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRALQGFKDGSVRVLVATDIAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++        + + R    S
Sbjct: 320 GIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISLVAAEEALLLKAIERLTGES 379

Query: 367 VVWEPAPSVE 376
           +  E  P  E
Sbjct: 380 LRRENVPGFE 389


>gi|320335085|ref|YP_004171796.1| DEAD/DEAH box helicase domain-containing protein [Deinococcus
           maricopensis DSM 21211]
 gi|319756374|gb|ADV68131.1| DEAD/DEAH box helicase domain protein [Deinococcus maricopensis DSM
           21211]
          Length = 604

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 145/537 (27%), Positives = 248/537 (46%), Gaps = 34/537 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M+  + I   +   L+ERG +  + +Q   L   ++ +D++  A+TG+GKT+AF + +  
Sbjct: 1   MQFTDLIAPALAARLAERGILEASPIQAESLPHTMQGRDLIGRARTGTGKTLAFAIPVID 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +R      P AL +APTRELA QV  E +    +   +     GG +   + + 
Sbjct: 61  KLEPSRER---GRLPRALILAPTRELAKQVAEEFKKSAPEL--LTLTVYGGAAYGPQEKA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++VGTPGR+ DHI    L +  ++  +LDEADEML +GF D IE IL ++P+ R
Sbjct: 116 LYGGVDVIVGTPGRVIDHIERGNLKLDAVQFAILDEADEMLSVGFADAIESILSATPETR 175

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT  +       K  +   V   +     Q +       +     R   + + L
Sbjct: 176 QTMLFSATLPAGVTRIGNKYLKDPLVVDLVGESRMQAAQTVQHLKVKVGRTRTRVLADFL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  + AIVF  T+  V      L     +  AL G+L+Q +R  AL   R GR RV +
Sbjct: 236 TIYNPERAIVFTRTKREVDELAMELIHRGLEAEALHGDLAQSQRERALGSFRAGRVRVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LV+   L  +PE+ +HRSGRTGRAGR G ++ +  +   R    L
Sbjct: 296 ATDVAARGLDIPEIDLVVQYHLPQDPESYVHRSGRTGRAGRTGTAIVMYGEREGRELRNL 355

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAA 418
             +  V       P+ + +RE  A+    +   +D  +        + L ++   + +A 
Sbjct: 356 EYQTGVKFEERSIPTPKEVREASARAAADNVKKVDAEMAQPFMAEAERLFSELGLDALAR 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
              +I        +     SL+SG +                    G +   L+    ++
Sbjct: 416 ALAKIS----GVTQPAVNASLLSGEE--------------------GMTTIILN---AER 448

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
                 + ++ RS+ I+ + +G IR+       ++  + V  L     +D  + ++ 
Sbjct: 449 MSVARAVALIARSTDIDTRRLGKIRLWRGGAVADLPNEAVAPLLAKNPIDDEVTIEV 505


>gi|28871796|ref|NP_794415.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855048|gb|AAO58110.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 442

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 186/368 (50%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNDVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG+ G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +  P  E
Sbjct: 369 RKEEPDFE 376


>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 479

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 189/367 (51%), Gaps = 7/367 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT +F L +
Sbjct: 7   LSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P  +   L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 67  LHRLLQNRIKPQP-KSCRVLVLSPTRELSGQILDNFNAYGRHLRLTSALAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R + +G  ++V TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P 
Sbjct: 126 RSVMHGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVIAKLPV 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA    +D  RV +         I  R + V  + +   +  +
Sbjct: 186 KRQTLLFSATMPKDIAELANQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAHLAQL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A++F  T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAAFRTGEIRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G ++ ++    +    R
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTEGAAISLVAGAEEMAYLR 365

Query: 355 RAERLFR 361
             E+L R
Sbjct: 366 DIEKLIR 372


>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 495

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 130/387 (33%), Positives = 204/387 (52%), Gaps = 8/387 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 16  TFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQ 75

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + N   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 76  NLLPDANTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQT 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 136 EQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 196 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 255

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 256 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGT 315

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 316 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 375

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
               + +    ++  E     +   E+
Sbjct: 376 LLADIEKLIKRNLPRETLTDFDPTGEQ 402


>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
 gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
          Length = 438

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 189/371 (50%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S++GY   + +Q   +   L  KDVL SAQTG+GKT  F L +   L  + 
Sbjct: 8   LSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQLLSQQP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   ++       +   V  GGV+   +   L+NG  
Sbjct: 68  PL--RKRPIRALILTPTRELAAQVYANVKEYSTFLDIRSTVIFGGVNARPQIATLRNGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    K L+++ ++ +VLDEAD MLD+GF  DI+ +++  PK+R+ L+FS
Sbjct: 126 ILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIELVPKRRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA++     V V    EN     ++ +   V    +   ++ ++       
Sbjct: 186 ATFSKDIKKLAQSILHHPVSVEATPENTTAEKVNQKVYKVDKPRKTELLIKLISEGNWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R TK L        A+ G  +Q  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLTKKLIAKHISAAAIHGNKTQNARTKALDGFKKGTIRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++          + +  +  
Sbjct: 306 GLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGASGEAISLVSAEEYEYVRGIEKLLDEK 365

Query: 367 VVWEPAPSVEA 377
           +  E     EA
Sbjct: 366 LHSEEIEGFEA 376


>gi|50554139|ref|XP_504478.1| YALI0E27715p [Yarrowia lipolytica]
 gi|74659776|sp|Q6C4D4|DBP2_YARLI RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49650347|emb|CAG80081.1| YALI0E27715p [Yarrowia lipolytica]
          Length = 552

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 196/387 (50%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + + ++G+   T++Q       L  +DV+  A TGSGKT+++ L  
Sbjct: 115 VTNFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPA 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    S    P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 175 IVHINAQ-PMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQI 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 234 RDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA +Y KD ++VNI S       +I     +    ++ +    
Sbjct: 294 DRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVEVCTEYEKRDRLVK 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      TK L +  +  +A+ G+  QQER   L   R G+
Sbjct: 354 HLETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+  +  VI+ +  SN E+ +HR GRTGRAG KG +     ++ ++
Sbjct: 414 SPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYTYFTEDNRK 473

Query: 355 RAER---LFREANVSVVWEPAPSVEAI 378
           +A     + REA   +     P +E +
Sbjct: 474 QARDLLVILREAKQHI----DPKLEEM 496


>gi|13470499|ref|NP_102068.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021241|dbj|BAB47854.1| probable ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 527

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 143/481 (29%), Positives = 221/481 (45%), Gaps = 18/481 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q   +   L  KD+L  AQTG+GKT +F L + +
Sbjct: 13  TFSDLGLSPKVLSAVTDAGYTVPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLT 72

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV            + +A+ IGGVS   + + 
Sbjct: 73  RLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGKNHKLNIALLIGGVSFDEQDKK 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R
Sbjct: 130 LERGADVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTR 189

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----VALSDRDNAIV 236
           + L FSAT+ P IT L + +    VRV ++      ++I  R V               +
Sbjct: 190 QTLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNL 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R
Sbjct: 250 IKAEDAELKNAIIFCNRKVEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLR 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  
Sbjct: 310 YLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYI 369

Query: 357 ERLFREANVSVVWEP-------APSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVL 407
           + + R     + W         A   E    R  +   +     D  + D  E+K     
Sbjct: 370 DAIERLIGNKIEWHDGDLSTVVASEGEDDAPRRGKGAPRRAGRKDDDRKDRGERKKGGER 429

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            A+H  E  A            A  +I+         R  +  R        R   +G +
Sbjct: 430 RARHSEEDAAVAQQEQPDVAETAVADISERRARKEAIRSENTERKSSDRNEPRAPERGDT 489

Query: 468 W 468
            
Sbjct: 490 R 490


>gi|308050752|ref|YP_003914318.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632942|gb|ADN77244.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 426

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 192/379 (50%), Gaps = 2/379 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     I +AL + GY  +T +Q+  +    +  D+L +AQTG+GKT AF L +  +++ 
Sbjct: 6   QGFCPEIVQALEQCGYQKMTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPMLQSMVD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  + S       L +APTRELA QV   +   +       AV  GGV +  + R L+ G
Sbjct: 66  KPQQRSR-RHVRGLILAPTRELAQQVADNVAQYHQFLPFTSAVAYGGVKMASQARQLEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL + +    ++++ ++ +VLDEAD MLD+GF  DI+ I D      + ++
Sbjct: 125 VDILVATPGRLQELMEMNMVSLAQVEYLVLDEADRMLDMGFIGDIQRIRDQIKLPHQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  LA    K    V++  ENR    + +    V    +   +  ++     
Sbjct: 185 FSATYPPKMKQLAAELLKKPKMVSVGEENRTAETVAHVFYPVDEDRKIELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + +       + L           G+ SQ  R  AL+  ++G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKEHADAIAEELNNDGLTTGVCHGDRSQGNRRRALKEFKEGKLRVLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ +L    E+ +HR GRTGRAG +G +V ++ +  +  A ++ R   
Sbjct: 305 ARGLDIQGLPHVVNYDLPFLAEDYVHRIGRTGRAGLQGHAVSLVGREDELTAVQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDA 383
             +     P  EA R RDA
Sbjct: 365 QRIRRVEQPGYEA-RNRDA 382


>gi|296191894|ref|XP_002743821.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
           [Callithrix jacchus]
          Length = 650

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|218768426|ref|YP_002342938.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
 gi|121052434|emb|CAM08770.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
          Length = 457

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 135/411 (32%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A+++  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQDTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGNLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|329120622|ref|ZP_08249285.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460846|gb|EGF07180.1| 3-hydroxyisobutyrate dehydrogenase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 455

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 4/380 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNAFSSLGLGAEIVSALAEQGYETPTPIQAAAIPKVLAGHDLLAAAQTGTGKTAAFMLPA 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L    N   SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYANTSASPAMHPVRMLVLTPTRELADQIDKNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N + ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRVGCEIVVATVGRLLDHVKQKNINFAKIETVVLDEADRMLDMGFIDDIRAIMGML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ L+FSAT +  I  LA+++      V +A++N  +++++   + V   ++   + 
Sbjct: 181 PRERQTLLFSATFADPIRKLAQDFMNAPETVEVAAQNTANANVEQHVIAVDTFEKRRLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     K  IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLDIKQVIVFCKTKQSVDQVTRDLQRRGLAAQSIHGDKSQQTRLETLNAFKEGGLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ +N Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDENEQKMF 360

Query: 357 ERLFREANVSVVWEPAPSVE 376
           E +      SV  E     E
Sbjct: 361 EAVCILTGNSVPVERIEGFE 380


>gi|254487619|ref|ZP_05100824.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
 gi|214044488|gb|EEB85126.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
          Length = 437

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 206/380 (54%), Gaps = 9/380 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   +P+ + +AL+  G  + T +Q+  +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFEMMGLPRRLVKALTNMGMTDPTPIQKQAIPHAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    R  P +    L +APTRELA Q+   L+     T +   + +GG S++ + 
Sbjct: 61  VAQMLEMEARPEPRT-VRGLVLAPTRELANQIMENLKGFCEGTQLKAMMVVGGQSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I    PK
Sbjct: 120 KRLERGVDLLVATPGRLLDLMDRRAVLLHKTTFLVLDEADQMLDMGFIHDLRKIASVLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    +      +A +++   ++ +
Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKKALLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F+  ++ G  SQ +R  A++  + G   V 
Sbjct: 240 LAKHTEERALVFGRTKHGCEKLMKDLVKSGFKAASIHGNKSQGQRDRAIESFKKGDITVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 359 LFREANVSV------VWEPA 372
           + +   +++       WEP 
Sbjct: 360 IQKTMKIAIPVASGRPWEPM 379


>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 525

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 124/354 (35%), Positives = 196/354 (55%), Gaps = 1/354 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+SE+ Y   T +Q   +   L   D++  AQTG+GKT AF L +   + A  
Sbjct: 64  LAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANR 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +P  A  AL +APTRELA Q+          T   VAV IGG     + R +++G  
Sbjct: 124 ARPAP-RACRALVLAPTRELATQIADAARTYGKFTRPSVAVVIGGAKPGPQARRMESGVD 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+    + +  ++ VVLDEAD+MLDLGF   I  I+   P++R+ +MFS
Sbjct: 183 LLVATPGRLLDHVAAGVIRLDAVETVVLDEADQMLDLGFIPAIRQIMAKLPRQRQAVMFS 242

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  + +D   V ++ E++    ID + +L+A  ++ + +  +L     + 
Sbjct: 243 ATMPKPIRALAGEFLRDPREVAVSVESKPVDRIDQQVLLLAPEEKKDKLAWLLADVAVER 302

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    + T+ L +      A+ G  SQ +R  AL   R GR RV +ATD+AAR
Sbjct: 303 AIVFTRTKHGADKVTRHLEDAGIGAAAIHGNKSQGQRERALDQFRSGRIRVLVATDIAAR 362

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           GID+ ++  V++ EL + PE+ +HR GRT RAG +G+++ ++  +       + 
Sbjct: 363 GIDVDNVSHVVNFELPNVPESYVHRIGRTARAGAEGVAISLVEPSELPYLRDIE 416


>gi|213966785|ref|ZP_03394936.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
 gi|301383294|ref|ZP_07231712.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato Max13]
 gi|302062467|ref|ZP_07254008.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato K40]
 gi|302133449|ref|ZP_07259439.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213928635|gb|EEB62179.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tomato
           T1]
          Length = 442

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 186/368 (50%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG+ G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +  P  E
Sbjct: 369 RKEEPDFE 376


>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
 gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
          Length = 422

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 187/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G+++ ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAISLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|302782315|ref|XP_002972931.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
 gi|300159532|gb|EFJ26152.1| hypothetical protein SELMODRAFT_98552 [Selaginella moellendorffii]
          Length = 534

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 187/370 (50%), Gaps = 6/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L     + A+
Sbjct: 96  SFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVHVNAQ 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E     + + +      GG     + RDLQ G 
Sbjct: 156 -PYLAPGDGPIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDLQRGV 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 215 EIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYW 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA  +  D  +V I S + + +  I     +V   ++   ++ +L     
Sbjct: 275 SATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFMD 334

Query: 245 KNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              I +F  T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATDV
Sbjct: 335 GGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDV 394

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LF 360
           AARG+D+ D+  VI+ +   + E+ +HR GRTGRAG KG +      +  + A     + 
Sbjct: 395 AARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSNAKHARELVSIL 454

Query: 361 REANVSVVWE 370
            EA   +  E
Sbjct: 455 SEAGQRITPE 464


>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 491

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 191/385 (49%), Gaps = 12/385 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL E  Y   T +Q   +   L  +DV+  AQTG+GKT +F L +
Sbjct: 7   LTSFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L    +  P +    L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 67  LHRILENRIKPQPKT-CRVLVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++   L +  ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 126 RSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPI 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA+   +D  RV +         I+ R + +  S +   +  I
Sbjct: 186 KRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLATI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G   A+VF  T+    +  K L        A+ G  SQ  R   L   R G  R  
Sbjct: 246 LQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG +G ++ +     +    R
Sbjct: 306 VATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEETGYLR 365

Query: 355 RAERLFR-----EANVSVVWEPAPS 374
             E+L R     E + +   +PAPS
Sbjct: 366 DIEKLIRIALPKEDHRTPGAKPAPS 390


>gi|32880087|gb|AAP88874.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17, 72kDa [synthetic
           construct]
 gi|61372130|gb|AAX43789.1| DEAD box polypeptide 17 [synthetic construct]
 gi|61372139|gb|AAX43790.1| DEAD box polypeptide 17 [synthetic construct]
          Length = 651

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|88705999|ref|ZP_01103707.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
 gi|88699713|gb|EAQ96824.1| ATP-dependent RNA helicase RhlE [Congregibacter litoralis KT71]
          Length = 443

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 197/381 (51%), Gaps = 1/381 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+ ++GY   T +Q+  +   L   D+L  AQTG+GKT  F L +   L  +
Sbjct: 7   SLSAELLRAVEKQGYDKATPIQQKAIPLVLEGSDLLAGAQTGTGKTAGFTLPMLQRLQNK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  S P AL + PTRELA QV   +    A      AV  GGVS++ +++ L  G 
Sbjct: 67  YPG-TAKSYPKALVLTPTRELAAQVHESVRDYGAYLPFKSAVIFGGVSINPQKQKLIKGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL DH++ + +++S ++ +VLDEAD MLD+GF  DI  ++   PK+R+ L+F
Sbjct: 126 DVVVATPGRLLDHVQQRSIDLSKIEILVLDEADRMLDMGFIHDIRRVMKVIPKQRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA  + ++  ++ +  +N     +  R   V    +   +   +     +
Sbjct: 186 SATFSNEIKKLASEFLENPQQIQVTPQNTATKLVSQRVYPVDKGRKRELLSQQIGEGNWQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+   +R  + L++      A+ G  SQ  R+ AL   + G  R  +ATD+AA
Sbjct: 246 QVLIFTRTKHGANRLAEQLSKDGISSAAIHGNKSQGARTRALAEFKSGAIRALVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ EL +  E+ +HR GRT RAG++G ++ ++  +  +    + +    
Sbjct: 306 RGIDIDKLPHVVNYELPNVAEDYIHRIGRTARAGQEGHAISLVCVDELKLLRDIEKLLGS 365

Query: 366 SVVWEPAPSVEAIRERDAQRI 386
           ++     P  E      A+ I
Sbjct: 366 AIEKVYLPGFEIDPSIKAEPI 386


>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 441

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 116/412 (28%), Positives = 194/412 (47%), Gaps = 8/412 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL + GY   T++Q   + P +  +DVL SA TG+GKT A+ L +   L+  
Sbjct: 10  DLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLIDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +     A T + VA   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARAFAAHTHLDVATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      +  +R+      +    A   +    +   +     
Sbjct: 188 SATLEGDAIKDFAERLLNDPVEIESDPSRRERKKILQWYYRADDVKHKTALLCHQLKQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F   R  V      L E       L GE+ Q +R+ A++ + DGR  V +ATD+
Sbjct: 248 VTRSIIFVRKRERVHELVAWLREAGINSCYLEGEMVQAKRNEAIKRLSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  V + +L    +  LHR GRTGRAGRKG ++  +  +      ++ R  
Sbjct: 308 AARGIDINDVSHVFNFDLPRTSDTYLHRIGRTGRAGRKGCAISFVEAHDHLLLGKISRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           N      V+ E  P+ +A   +   +  +  L +   + +++K    +  +H
Sbjct: 368 NEPLKPRVIDELRPTTKAPSAKTTGKPSKKVLAMRKEKKEKEKEKVKVKVRH 419


>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 567

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 12/380 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+   P  I + +   G+ + T +Q       L  +D++  A+TGSGKT  F L  
Sbjct: 124 LQTFESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLP- 182

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R      P  L +APTRELAVQ+  E +     +G+      GG     + 
Sbjct: 183 -GMLHIQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGRSSGIRNTCVYGGAPKGPQL 241

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +    + +  +  +VLDEAD MLD+GF   I+ I+ + P+
Sbjct: 242 RDLQYGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRMLDMGFEPQIQRIVRTLPR 301

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDN 233
           +R+ L FSAT    +  +A  +  +                  S   Y +V+  + ++  
Sbjct: 302 QRQTLFFSATWPREVKHIASQFVVNQTVHVFIGGVEEKLVANKSITQYVSVVNGMHEKFA 361

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  I+R       I+   T   +           F+  A+ G+  Q ER   LQ  +DG
Sbjct: 362 ELAKIIRAKPPGTRIIIFCTTKRMCDQLSYQMGREFRSAAIHGDKKQSERDYVLQAFKDG 421

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + +ATDVAARG+D+P++  V++ +  +  E+ +HR GRTGRAG  G S   + Q   
Sbjct: 422 RTPILVATDVAARGLDIPNVAAVVNFDFPTGTEDYIHRIGRTGRAGATGESYTFMSQEDA 481

Query: 354 RRAERL---FREANVSVVWE 370
           + A  L    REA  ++  E
Sbjct: 482 KHARDLMQVMREAGQTISPE 501


>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
 gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
           FB035-09AN]
          Length = 565

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 208/464 (44%), Gaps = 18/464 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   I +AL +  +   T +QE  +   L+ KDVL  AQTG+GKT A+ L + S 
Sbjct: 3   FESLDLNDDILDALYDMRFEKCTPIQENCIPEILKGKDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P  A   L ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPEDAINCLIMSPTRELAQQIDQAIQGFSYYLNGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A++V+ TPGR   H+    +++S +   +LDEAD MLD+GF +DI  I  + P
Sbjct: 120 LKSLSLGANLVIATPGRFISHMSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIQKNLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + +MFSAT+   I  LA+    +   +   + ++    I   A +   + +   I +
Sbjct: 180 KTCQTIMFSATMPKKIEDLAQTLLTNPSVI-KLAVSKPAEKIHQLAYVCHETQKMGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    +  I+F  ++  V +    L +       +  +L+Q ER   +   + G+  V
Sbjct: 239 IFKAGNLQRVIIFSGSKQKVKQIALSLNQKKINCGQMHSDLAQAERDEMMFKFKSGQIDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA RKG ++  + ++     +
Sbjct: 299 LVATDILARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRKGSAITFVNEDDIYYFQ 358

Query: 358 RLFREANVSVVWEPAPSVEAIRE------RDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           ++ +     V     P  E + E      R+ +R             D++   D  +  +
Sbjct: 359 QIEKFLEKEVEKAELP--EGLGEGLDYVSRNKERRKTSAKSRRRKDRDQQSHKDKKVRNN 416

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
                        +      E++        +   ++++R  + 
Sbjct: 417 RRNNNQPTATNKTKKQDVKAEKVQEGKNEPAKSYKKNNNRKQRP 460


>gi|294898580|ref|XP_002776285.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239883195|gb|EER08101.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 654

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +P  I   + + G+V+ T +Q       L  +D++  A+TGSGKT+AF L  
Sbjct: 198 ITQFEEACLPDYIMVEIQKAGFVSPTPIQVQGWPVALSGRDMVGIAETGSGKTLAFLLPA 257

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELA+Q+  E +     + +    C GGV    + 
Sbjct: 258 VVHINAQ-PYLQKGDGPIVLVLAPTRELALQIKEECDRFGRSSRISNTCCYGGVPRGPQA 316

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNG  I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+     
Sbjct: 317 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 376

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LM+SAT    +  LA++   +        ++        + V V   +  +  +  
Sbjct: 377 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGQSGHACHNIQQFVEVVEENVKSERLQA 436

Query: 239 LRY--------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L               A++F  T+      T+VL    +  +++ G+  Q ER   L   
Sbjct: 437 LMRAVASASGGVFDAKALIFTDTKRCADDITRVLRRDGWPALSIHGDKKQSERDWVLAEF 496

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR  + IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +      
Sbjct: 497 KSGRMPIMIATDVASRGLDVKDVKYVINYDFPGTVEDYVHRIGRTGRAGAHGTAYSFFTA 556

Query: 351 NMQRRAER---LFREANVSVVW 369
           +  + A+    + REA+  V  
Sbjct: 557 DKAKLAKPLIGILREASQPVPE 578


>gi|121599633|ref|YP_993994.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
 gi|121228443|gb|ABM50961.1| putative ATP-dependent RNA helicase rhlE [Burkholderia mallei
           SAVP1]
          Length = 473

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 188/366 (51%), Gaps = 1/366 (0%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDRFS 70
             A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L     +  S
Sbjct: 1   MRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFYAENRS 60

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
              A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G  IVV 
Sbjct: 61  ARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGVDIVVA 120

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT S
Sbjct: 121 TPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLFSATFS 180

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I +LA +       + +A  N     I  +   V    +   + +++R H     +VF
Sbjct: 181 DEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWFQVLVF 240

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AARGID+
Sbjct: 241 TRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAARGIDI 300

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L  V++ +L + PE+ +HR GRTGRAG  G +V ++  + ++    + R     +  +
Sbjct: 301 DQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIERLIKREIPQQ 360

Query: 371 PAPSVE 376
             P  E
Sbjct: 361 VIPGFE 366


>gi|313906550|ref|ZP_07839880.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
 gi|313468619|gb|EFR63991.1| DEAD/DEAH box helicase domain protein [Eubacterium cellulosolvens
           6]
          Length = 524

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 182/372 (48%), Gaps = 6/372 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ Q +  A+ + GY   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MKFQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R        +L + PTRELAVQ+    +       +      GG     +  
Sbjct: 61  EKLDNGEVR-----KLRSLVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQME 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V T GRL D++    +++  ++  VLDEAD MLD+GF +D+  I  S    
Sbjct: 116 ALRRGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTD 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT+   I  L +   +D   V +A ++     +D +   V  SD+   +  IL
Sbjct: 176 RQTLMFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVGHSDKLKVLAEIL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       I+F  T+    R  + L        A+ G+ +Q +R + L+  + G   V +
Sbjct: 236 KQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P++  VI+  L   PE  +HR GRTGRAG  G+++ +  ++     + +
Sbjct: 296 ATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLKEV 355

Query: 360 FREANVSVVWEP 371
            +     +    
Sbjct: 356 EKILKREIPEMK 367


>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
 gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V51]
 gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           MZO-2]
          Length = 422

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 187/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
 gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
          Length = 509

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 218/473 (46%), Gaps = 12/473 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   + P L  +D+L  AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    E       + + + IGGVS   + 
Sbjct: 61  LTMLERGRAR---ARMPRTLILEPTRELAAQVHENFEKYGKNHRLNIVLLIGGVSFEEQY 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P 
Sbjct: 118 RKLERGADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERIVKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A  +   + +  + V         R+   
Sbjct: 178 TRQTLFFSATMPPEIQKLADKFLQNPARIEVAPPSSTAATVTQKLVACSGKDFEKRERLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I       NAI+FC+ +  V+   K L +H F V AL G++ Q+ R+N LQ  +D   
Sbjct: 238 DLIRSQTDLTNAIIFCNRKKDVADLYKSLEKHGFSVGALHGDMDQRSRTNMLQGFKDNEI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR+G +  ++ +   + 
Sbjct: 298 TLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLVNRRDTKY 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKH 411
            + + +     + W            DA    +     D   G      +K  +      
Sbjct: 358 VDAITKLITRDIEWLDGDKFAGTASDDADEAPRRGRRSDGKPGSSRCSGRKAGETETEAA 417

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
             E I         A   A     P +  S   R     RA            
Sbjct: 418 KAEPINETAAVEPVANASAEPTAAPDAQESRPKRQEPSKRADPQQPKQASPEP 470


>gi|90577462|ref|ZP_01233273.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440548|gb|EAS65728.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 432

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 200/390 (51%), Gaps = 4/390 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +   Q + +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   L+ 
Sbjct: 6   QGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLI- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  +        AL +APTRELA Q+   +      T V      GG  +  + + L+ G
Sbjct: 65  EKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSTQEKRLEQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    +++++L+ +V DEAD MLD+GF   I  ILD    K + ++
Sbjct: 125 VDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILDDIRTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  + +LA +      R+ +  EN     I +    V    +   +  ++     
Sbjct: 185 FSATSSAQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+VA
Sbjct: 245 KQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++  + +  +    ++ R   
Sbjct: 305 ARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLVQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDA--QRILQDPLF 392
             +        E  + RDA  +R+   P F
Sbjct: 365 QRIHRVQLIGYEP-KSRDALLERMHSKPAF 393


>gi|89072912|ref|ZP_01159469.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89051434|gb|EAR56889.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 432

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 201/390 (51%), Gaps = 4/390 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +   Q + +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   L+ 
Sbjct: 6   QGFSQDLVKALTEIGYEKLTPVQQKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLI- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E  +        AL +APTRELA Q+   +      T V      GG  +  + + L+ G
Sbjct: 65  EKPKSKSRFNVRALILAPTRELAEQIANNINEYAKYTDVNCTAIFGGKKMSSQEKRLEQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    +++++L+ +V DEAD MLD+GF   I  IL+    K + ++
Sbjct: 125 VDILVATPGRLIEHMELNNVSLANLEFLVFDEADRMLDMGFIGAIRVILEDIRTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP + +LA +      R+ +  EN     I +    V    +   +  ++     
Sbjct: 185 FSATSSPQMNSLASDILHKPQRITVTPENSTADTIAHVVYPVDEDRKREMLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + S ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+VA
Sbjct: 245 KQVLVFVNYKESANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++  + +  +    ++ R   
Sbjct: 305 ARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLVQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDA--QRILQDPLF 392
             +        E  + RDA  +R+   P F
Sbjct: 365 QRIHRVQLIGYEP-KSRDALLERMHSKPAF 393


>gi|205277319|ref|NP_001034520.2| vasa RNA helicase [Tribolium castaneum]
 gi|270011102|gb|EFA07550.1| vasa [Tribolium castaneum]
          Length = 627

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 198/382 (51%), Gaps = 13/382 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + E + + GY   T++Q+  +   L  +D++  AQTGSGKT AF L +
Sbjct: 205 ITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPI 264

Query: 59  ASTLLAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              LL++ +  +  +    P+ + ++PTRELA+Q+  + +     + V VAV  GG S +
Sbjct: 265 IHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTN 324

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  +  G HI+V TPGRL D +    ++ + LK  VLDEAD MLD+GF  D+E +L  
Sbjct: 325 HQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSH 384

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    +  LA  +  + + + +       +D++ +   V+  D+
Sbjct: 385 QSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDK 444

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +V+IL     +  ++F  T+ +       L+E   Q  ++ G+  Q ER  AL   +
Sbjct: 445 RSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFK 504

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G  +V +AT VAARG+D+ D++ VI+ +L  + +  +HR GRTGR G KG +     ++
Sbjct: 505 TGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDED 564

Query: 352 MQR----RAERLFREANVSVVW 369
             R       ++  +A   +  
Sbjct: 565 QDRNLASDLAKILSQAKQEIPE 586


>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 452

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+ E GY   T +Q A +   +   D++  AQTG+GKT AF L +   LLA+ 
Sbjct: 8   LHENILKAIQEAGYSEPTPIQAAAIPQVVAGHDMIGIAQTGTGKTAAFTLPML-HLLAQL 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL +APTREL  Q+   +        + VA+  GGV    +   L+ G  
Sbjct: 67  HGQGPLRGIKALILAPTRELVAQIHDNVRAYAKHLPLKVAMIFGGVGERPQIEALRAGTD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +  +  N + L+ +VLDEAD MLD+GF   I+ I+ + PKKR+ L+FS
Sbjct: 127 LVIATPGRLIDLMGQRHGNFNSLEFLVLDEADRMLDMGFLPSIKRIVKALPKKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  L   +      V I   +     +      V    +   +V++L+      
Sbjct: 187 ATLSKEIEALTHEFLNHPKTVQIGKRSNPAESVTQFVYEVPKHLKPALLVHLLKDPAFNM 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +    R  + L  +  + V L    +Q +R  AL   + G ARV +ATD+AAR
Sbjct: 247 VLVFSRMKHGADRIARHLDRYGIKTVTLHSNRTQNQRLRALADFKSGAARVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ +   + E+ +HR GRTGRA   G ++  I        + L R     
Sbjct: 307 GIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPLKSLERFIGRG 366

Query: 367 VVWEPAPSVE 376
           +V + A   +
Sbjct: 367 IVRKRAEGFD 376


>gi|58429986|gb|AAW78361.1| vasa RNA helicase [Tribolium castaneum]
          Length = 580

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 198/382 (51%), Gaps = 13/382 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + E + + GY   T++Q+  +   L  +D++  AQTGSGKT AF L +
Sbjct: 157 ITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPI 216

Query: 59  ASTLLAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              LL++ +  +  +    P+ + ++PTRELA+Q+  + +     + V VAV  GG S +
Sbjct: 217 IHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTN 276

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  +  G HI+V TPGRL D +    ++ + LK  VLDEAD MLD+GF  D+E +L  
Sbjct: 277 HQRGRILGGCHILVATPGRLKDFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSH 336

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    +  LA  +  + + + +       +D++ +   V+  D+
Sbjct: 337 QSMPATGERQTLMFSATFPEEVQQLAGKFLLNYIFIAVGIVGSACTDVEQKFFQVSKFDK 396

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +V+IL     +  ++F  T+ +       L+E   Q  ++ G+  Q ER  AL   +
Sbjct: 397 RSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFK 456

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G  +V +AT VAARG+D+ D++ VI+ +L  + +  +HR GRTGR G KG +     ++
Sbjct: 457 TGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDED 516

Query: 352 MQR----RAERLFREANVSVVW 369
             R       ++  +A   +  
Sbjct: 517 QDRNLASDLAKILSQAKQEIPE 538


>gi|149914601|ref|ZP_01903131.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
 gi|149811394|gb|EDM71229.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. AzwK-3b]
          Length = 511

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 121/384 (31%), Positives = 195/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   + P L  +D+L  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAVEEAGYTDPTPIQAGAIPPALEGRDILGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  LSLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKNLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDKGVDVLICTPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+   FSAT++P I  +   + ++ VR+ +A +      I+   V+   S R+      
Sbjct: 178 TRQTFFFSATMAPEIERITNTFLQNPVRIEVARQATASETIEQGVVMFKPSRRERADSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAIVFC+ +  V   +K L +H +    + G+L Q +R+  L  
Sbjct: 238 RDILRAIIDAEGEACTNAIVFCNRKVDVDIVSKSLKKHGYDAAPIHGDLDQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G  ++ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRAGDLKILVASDVAARGLDVPSVSHVFNYDVPGHAEDYVHRIGRTGRAGRSGKAMMISG 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
               +  + + R     +     P
Sbjct: 358 PRDDKNLDAIERLIQKQIPRLENP 381


>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 422

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 192/383 (50%), Gaps = 4/383 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   +    AL + PTRELA QV   ++     T + +    GG S+  +   L+ G 
Sbjct: 73  WVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D V V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKVGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + + + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE---AIRERDAQR 385
            +  E     E    +RE ++ R
Sbjct: 373 RLPQEWLKGFEPSPVVREENSPR 395


>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
 gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM603]
 gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
           VM573]
          Length = 422

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 192/383 (50%), Gaps = 4/383 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   +    AL + PTRELA QV   ++     T + +    GG S+  +   L+ G 
Sbjct: 73  WVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D V V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPVEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + + + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEEPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE---AIRERDAQR 385
            +  E     E    +RE ++ R
Sbjct: 373 RLPQEWLKGFEPSPVVREENSPR 395


>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
 gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
          Length = 552

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 195/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  LSLLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 QIIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  RV +A +      I+   V+   S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREASEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L+ 
Sbjct: 238 RNVLRKLIDAEGDKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTRTLES 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G  R  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRAGDLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGKAMMICS 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
              ++  + + +     +     P
Sbjct: 358 ARDEKNFDAIEKLIQKEIPRIDNP 381


>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Vibrio angustum S14]
 gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
           S14]
          Length = 416

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +     +  A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +
Sbjct: 1   MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + V    GG+S     
Sbjct: 61  IQHL-QDFPRKRPGPA-RILILTPTRELAIQVADQARALAKYTTLKVFTITGGISYDEHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      
Sbjct: 119 EMLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKIVERLNHECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT     +   ++    + V VN     R+   I    +     D   A++ 
Sbjct: 179 RRQSLLFSATLEGKGVREFSETILNEPVEVNADPSRRERKKIHQMYLRCDNMDHKLALLE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  I+F  TR  +      L         + GE++Q  R+N +   RDG   V
Sbjct: 239 NIIKEQAERTIIFVKTRERLGILRGQLEAMGIPCNWIQGEMAQAARTNMITRFRDGVVNV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ +L    E  +HR GRT RAG+KG ++ ++  + Q   E
Sbjct: 299 LIATDVAARGIDLPDVSHVINFDLPRTAEVYVHRIGRTARAGKKGTAISLVEAHDQSMIE 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RISRYMKEEVQE 370


>gi|254369445|ref|ZP_04985457.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122395|gb|EDO66535.1| hypothetical protein FTAG_00428 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 441

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 195/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICNALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +   V  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSGVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|59711751|ref|YP_204527.1| DNA and RNA helicase [Vibrio fischeri ES114]
 gi|59479852|gb|AAW85639.1| DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 431

 Score =  204 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 199/379 (52%), Gaps = 2/379 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     I +AL+E GY  LT +Q+  +    +  D+L +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +  +A  AL +APTRELA Q+   +      T + V    GG  +  + R L+ G
Sbjct: 66  SKKSATRRTA-RALILAPTRELAEQIAVNIADYIKYTSLTVTSVFGGKKMSSQERALEPG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI  + ++I++L+ +V DEAD MLD+GF + I  I+       ++++
Sbjct: 125 VDILVATPGRLQEHIEEENVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +  +   R+++  EN   S I +    V    +   +  ++     
Sbjct: 185 FSATSSAQMNKLASDILRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  ++G+ARV +ATDVA
Sbjct: 245 QQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG+KG +V  + +  +    ++     
Sbjct: 305 ARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSREEELTVVQVETLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDA 383
             +     P  E  + RDA
Sbjct: 365 QRIRRVEQPGYEP-KNRDA 382


>gi|261392319|emb|CAX49846.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
          Length = 457

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 135/414 (32%), Positives = 224/414 (54%), Gaps = 8/414 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V + ++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVTAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E + +     +
Sbjct: 313 LDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFEAIKKLTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAA 418
           + E    +E    R  ++    P   ++ +  ++   +       K+   + AA
Sbjct: 373 LIE---RIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESAKAQREKNTRPENAA 423


>gi|91206542|sp|Q4PHU9|DBP2_USTMA RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 552

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 187/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  I   + + G+   +++Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 129 VTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+AL +APTRELA Q+  E       + +      GGV    + 
Sbjct: 189 MVHINAQ-PLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQI 247

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ GA I + TPGRL D +     N+  +  +V+DEAD MLD+GF   I  IL     
Sbjct: 248 RDLQRGAEICIATPGRLIDMVDAGKTNLRRVTYLVMDEADRMLDMGFEPQIRKILQQIRP 307

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LMFSAT    +  LA ++  +  +VNI S     + ++     +    ++   ++ 
Sbjct: 308 DRQTLMFSATWPKEVQRLAGDFLNNYAQVNIGSTELAANHNVKQIIEVCTEFEKKGKLIG 367

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L    A+N   I+F ST+      TK L +  +  +A+ G+  QQER   L   + GR+
Sbjct: 368 HLETISAENGKVIIFTSTKRVADDLTKFLRQDGWPALAIHGDKQQQERDWVLAEFKSGRS 427

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VA+RG+D+ D+  VI+ +  +N E+ +H+ GRTGRAGR G +         + 
Sbjct: 428 PIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPENSKS 487

Query: 356 AER---LFREANVSVVWE 370
           A     + REA   +  E
Sbjct: 488 ARELIGILREAKQEIPRE 505


>gi|197335615|ref|YP_002156614.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317105|gb|ACH66552.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 398

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 190/374 (50%), Gaps = 1/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L +   L  ++
Sbjct: 8   LSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILEILSEDS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELA+QV   ++       +      GGV    +++ L  G  
Sbjct: 68  TKV-RAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKDQKQRLIEGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P  R+ ++FS
Sbjct: 127 VLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    + + ++I+ +      ID     V    +   + ++++ +    
Sbjct: 187 ATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWDQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A     SQ+ R+  L   ++G+ +  +AT +AAR
Sbjct: 247 ALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVATGIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ +L    ++ +HR GRTGRAG KG ++  + ++  +    +       
Sbjct: 307 GIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLCMIESRLGHL 366

Query: 367 VVWEPAPSVEAIRE 380
           +V +        +E
Sbjct: 367 IVRKEIEGFAPRKE 380


>gi|188996905|ref|YP_001931156.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931972|gb|ACD66602.1| DEAD/DEAH box helicase domain protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 405

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 118/394 (29%), Positives = 202/394 (51%), Gaps = 16/394 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  N+ +   ++L E GY   T +QE  +   +  KD++  AQTG+GKT AFG+ + 
Sbjct: 6   KTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  +        AL + PTRELA+QV +E++ L     V      GG S+  +  
Sbjct: 66  EKVNPKQKKV------QALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQIN 119

Query: 120 DLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+ G+ +VV          +    LN+ ++K  VLDEAD ML++GF DDIE I+   P+
Sbjct: 120 FLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPE 179

Query: 179 KRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT+   I     +   ++   + +  +      I      V   D+   +  
Sbjct: 180 DRQNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTE 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  + A+  I+F  T+       + L E  F   A+ G+ SQ++R   L   R G+ ++
Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  ++LVI+  L  + E+ +HR GRTGRAGR+G ++ ++  +  ++ +
Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQ 359

Query: 358 RLFR--EANVSVVWE----PAPSVEAIRERDAQR 385
            + +  +AN+ V+ E       S +  +    +R
Sbjct: 360 NIQKKTKANIEVINEAQEKKLSSAQKDKSSQKER 393


>gi|121602645|ref|YP_988916.1| DEAD/DEAH box helicase domain-containing protein [Bartonella
           bacilliformis KC583]
 gi|120614822|gb|ABM45423.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal domain
           protein [Bartonella bacilliformis KC583]
          Length = 462

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N+     + +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L +
Sbjct: 5   LNNFDNLGLSAKVIKAVQLAGYTAPTPIQSETIPHVLQHKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P  L + PTRELA QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLL---EKGRAKARMPRTLILEPTRELAAQVKENFDKYGINHRLNVALLIGGVSFDHQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHFERGTLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---- 234
            R+ L FSAT++P I  L + +    V V I  E+     I  R V              
Sbjct: 182 TRQTLFFSATMAPEIIKLTEQFLHSPVCVEITKESSTARTITQRLVKSGSKAWHKRAVLR 241

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +        KNAIVFC+ +  +S   + L ++ F V  L G++ Q  R N L   ++ +
Sbjct: 242 KLIHDENKELKNAIVFCNRKKDISELFRSLVKYNFSVGVLHGDMDQHSRMNTLADFKENK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRA R G +  ++ +N Q+
Sbjct: 302 LTLLVASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKNDQK 361

Query: 355 RAERLFREANVSVVW 369
               + + +  ++ W
Sbjct: 362 YISAIEKISKENIEW 376


>gi|126463236|ref|YP_001044350.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126104900|gb|ABN77578.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17029]
          Length = 461

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 208/455 (45%), Gaps = 5/455 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + + + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L
Sbjct: 9   MADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDLMGLAQTGTGKTLAFGLPL 68

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL       P +   AL +APTREL  Q+   LE     T V V    GG S++R+ 
Sbjct: 69  LHRLLGVGHPPPPRT-IRALILAPTRELVTQIATNLELFTKGTPVKVVTITGGASINRQT 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  GA I+V TPGRL D +    + + H   +VLDEAD+MLD+GF   +  I    P 
Sbjct: 128 ERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPL 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA  Y ++ V+V +A   +    I          D+   + + 
Sbjct: 188 KRQTLLFSATMPKLIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESY 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H  + A+VF  T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V 
Sbjct: 248 LQKHPREQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGSLDVL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + ++ + PEN +HR GRT RAG +G +V  +          
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMEEFRA 367

Query: 359 LFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + +     + V   AP    I    A R  Q P      +   K             + A
Sbjct: 368 VEKLLKQPIPVIGGAPWAADIVAA-APRPGQKPRQGGRPKTGAKPQGKPQAKAQPKPQGA 426

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
           A           AP         +   R  D +R 
Sbjct: 427 AKAHPRAGRPAGAPGGHAAPKRAARGPRRGDAARG 461


>gi|241668567|ref|ZP_04756145.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877101|ref|ZP_05249811.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843122|gb|EET21536.1| ATP-dependent RNA helicase rhlE [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 445

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 192/371 (51%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL + 
Sbjct: 8   LNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  
Sbjct: 68  K--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGVE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMFS
Sbjct: 126 ILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKRIHKLLPKKLQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP IT+LA  +  +   V+    N     I  +   +  S + NA++++++      
Sbjct: 186 ATFSPEITSLANEFLDNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++  +       +       
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEHLIGHL 365

Query: 367 VVWEPAPSVEA 377
           +  E     EA
Sbjct: 366 LPREELEGFEA 376


>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 429

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 193/378 (51%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELHLNGNVLEALDAMRFEECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   PA A   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPADAINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA N   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAGNILNNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEETPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVAITFVSEKEQGSF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + + +  +  +   P P 
Sbjct: 357 KNIEKFLDRDIYKIPVPE 374


>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 444

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 202/382 (52%), Gaps = 4/382 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      I  A+SE GY  +T VQ+  +    R +DVL SAQTG+GKT AF L +   
Sbjct: 12  FESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 71

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            + +N   +  S   AL + PTRELA Q+   +        V V    GGV V  + + L
Sbjct: 72  -MFDNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQKL 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL +H++   LN+S+++ +VLDEAD MLD+GF  DI+ I+ +  K+R+
Sbjct: 131 KRGTDIIVATPGRLLEHLQACNLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S A+  LA +       +++ S+N     +      V    +   +  ++  
Sbjct: 191 NLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSELIGK 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  ++F +TR +  +  K L         + GE +Q  R  AL+  ++G+ R  +AT
Sbjct: 251 KNWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRALVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+ DLE V++ +L    E+ +HR GRTGRAG+ G+++ ++ +  +R    +  
Sbjct: 311 EVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLYDIET 370

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
                +     P  E +  RD 
Sbjct: 371 LIGKKLRRITIPGYE-VGSRDM 391


>gi|254428186|ref|ZP_05041893.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194355|gb|EDX89314.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 457

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 193/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++ERGY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERL--RT 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +  +   AL + PTRELA QV   +        +  +V  GGV ++ + + L+ G  
Sbjct: 66  GTPARNNQVRALVLTPTRELAAQVAESVSTYGKNLPLTSSVVFGGVKINPQMQRLRGGCD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILSKLPPKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    D V V+I+  N     +      V    +   + ++++ HG   
Sbjct: 186 ATFSPEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQEHGWFQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L  +  +  A+ G  SQ  R+ AL   ++G+ R  +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKNGKVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G ++ ++  +  ++ + + R     
Sbjct: 306 GLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKDIERLTQQQ 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 LERKIVAGFE 375


>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 445

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 186/378 (49%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R A   +       +E
Sbjct: 367 IKRYAEELLKPRVIEGLE 384


>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           timonensis CRIS 5C-B1]
          Length = 583

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 208/487 (42%), Gaps = 36/487 (7%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE +P    + +AL +  +   T VQE  +   L+ +DVL  AQTG+GKT A+ L +
Sbjct: 1   MK-FEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S + + N    P +A   L ++PTRELA Q+ + ++        V +V + G +     
Sbjct: 60  LSKIDSNN---YPDNAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRY 116

Query: 119 RDLQNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
                     A +V+ TPGRL  HI    +++S +   VLDEAD MLD+GF DDI  I  
Sbjct: 117 DQEVKSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAK 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  + +MFSAT+   I                 + ++    I   A +   + +   
Sbjct: 177 GLPKTCQTIMFSATMPDKI-NDLARTLLKNPVEIKLAVSKPAEKIKQCAYICYEAQKLKI 235

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I +I +    K  IVFC ++  V +    L         +  +L Q +R   +   + G+
Sbjct: 236 IEDIFKKGDLKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQ 295

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+ ARGID+ D+ +VI+ ++ ++ E+ +HR GRT RA R G ++ ++ Q+   
Sbjct: 296 LDVLVATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQDDTY 355

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E++ +     V     P          + I + P +    +   +      + + D  
Sbjct: 356 LFEQIEKFLGKEVEKIQLP----------EGIGEAPEYTSGRRPQRRGTKAKSIRRKDRN 405

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
           + A    +  R      E    V      +  +D  +  K                   G
Sbjct: 406 QTAHKH-KPRRQNDQQNETSQTVDASKNNNAPKDSEQREKQTSRK--------------G 450

Query: 475 SKQKAEA 481
            ++  + 
Sbjct: 451 RRKNVQP 457


>gi|253998846|ref|YP_003050909.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|253985525|gb|ACT50382.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
          Length = 538

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 215/475 (45%), Gaps = 23/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L L   LL   
Sbjct: 16  LAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLL-HLLQGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    
Sbjct: 75  PGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FS
Sbjct: 135 ILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     ++    LV  S + + + ++++ +  + 
Sbjct: 195 ATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQ 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R    L +      A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 255 VLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G +V ++ +   +  + + R     
Sbjct: 315 GLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGIER----- 369

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++    P VE   E      +      +  +    +       +  P +         R 
Sbjct: 370 LIKREIPRVEV--EGFVPSPVDKSAASEEREPRAPRPRQGQPRQGQPRQ------NQARQ 421

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                 + +P      R+         + G  +  N           GS+  A+ 
Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGGQPRQGKPAAANAN---------GSRNGAQP 467


>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
 gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
          Length = 435

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 196/372 (52%), Gaps = 3/372 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+   + I  A+ E GY   T +Q   +   L +KDVL +AQTG+GKT  F L L  
Sbjct: 2   SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N +    +   AL + PTRELA QV + +E          AV  GGV ++ ++  
Sbjct: 62  RLKDSNLK-DKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    L++S ++ +VLDEAD MLD+GF +DI+ IL   PK+R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA    K  V V ++  N     ++     V    +   +++++ 
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   ++ ++ L +      A+ G  SQ  R+ AL   ++G+ RV +A
Sbjct: 241 KNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG  G+++ ++  +       + 
Sbjct: 301 TDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLFGIE 360

Query: 361 REANVSVVWEPA 372
           R     +     
Sbjct: 361 RLIKQKIKKVEI 372


>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
 gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
          Length = 613

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 4/374 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L +     +         L + PTRELA QV   L        +   V  GGV +  + 
Sbjct: 62  RLASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D      +++S ++ ++LDEAD MLD+GF  D++ +L   PK
Sbjct: 122 ARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I
Sbjct: 182 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  
Sbjct: 242 IQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMMD 361

Query: 359 LFREANVSVVWEPA 372
           + R     +  +P 
Sbjct: 362 IERFTKQEIPVQPI 375


>gi|149065924|gb|EDM15797.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_a [Rattus
           norvegicus]
          Length = 652

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 186/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     +        +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|163940245|ref|YP_001645129.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|163862442|gb|ABY43501.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 450

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 200/377 (53%), Gaps = 9/377 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +   +  E+
Sbjct: 12  ISETFNHTLRENGITEATPIQEKAIPVIMSGKDIIGQAKTGTGKTLAFVLPILEKIDPES 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL +APTRELA+Q+  E++ +  +   +  +   GG  V ++ R L+   
Sbjct: 72  SDV------QALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGNT 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVV TPGRL DHIR + +++S+L  +VLDEAD+ML  GF  DIE ILD +P  ++ ++F
Sbjct: 126 HIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPDSKQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y ++   + + SE      I+ R +      + +A+  ++      
Sbjct: 186 SATMPKDIKKLAKRYMEEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G++ Q +R   ++  R+ + +  IATDVAA
Sbjct: 246 LAVIFCRTKVRASKLYDDLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    ++  E + +    
Sbjct: 306 RGLDVDGVTHVFNFDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGA 365

Query: 366 SVVWE--PAPSVEAIRE 380
            +  +    P ++ + E
Sbjct: 366 PIQRQIIEQPMIKNVDE 382


>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
 gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
          Length = 402

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 203/381 (53%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  + + +   +   G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++
Sbjct: 28  VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E+          AL +APTRELA Q+ + +  L     V +  CIGG SV  ++
Sbjct: 88  LQRIDHEDPHV------QALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQ 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG H+VVGTPGR+ D I    L+ S +K  VLDEADEML  GF+D I  +  S P+
Sbjct: 142 RKLENGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQ 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++++ SAT+   +  +   + ++ +R+ +  +      I      +     + + + +
Sbjct: 202 DVQVVLLSATMPSEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V + T+ +    F V  L G++ Q ER   ++  R G +RV
Sbjct: 262 LYNVVNVTQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGDMDQAERDTIMREFRSGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + +N  R+ +
Sbjct: 322 LITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLK 381

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            +       +   P    + I
Sbjct: 382 EIETYYTTQIEEMPESIADLI 402


>gi|47678395|emb|CAG30318.1| DDX17 [Homo sapiens]
 gi|109451124|emb|CAK54423.1| DDX17 [synthetic construct]
 gi|109451702|emb|CAK54722.1| DDX17 [synthetic construct]
 gi|119580647|gb|EAW60243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_c [Homo
           sapiens]
 gi|169145045|emb|CAQ08924.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|208967743|dbj|BAG72517.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [synthetic construct]
          Length = 652

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|297261056|ref|XP_001092491.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Macaca
           mulatta]
 gi|297708870|ref|XP_002831174.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Pongo
           abelii]
 gi|332859781|ref|XP_525595.3| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Pan
           troglodytes]
 gi|3122595|sp|Q92841|DDX17_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX17; AltName:
           Full=DEAD box protein 17; AltName: Full=DEAD box protein
           p72; AltName: Full=RNA-dependent helicase p72
 gi|1592565|gb|AAC50787.1| DEAD-box protein p72 [Homo sapiens]
 gi|2832596|emb|CAB09792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
 gi|119580650|gb|EAW60246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_f [Homo
           sapiens]
          Length = 650

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|294668347|ref|ZP_06733450.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309665|gb|EFE50908.1| hypothetical protein NEIELOOT_00259 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 399

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 4/372 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 6   MNPFSSLGLGQEIVSALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 65

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 66  LERLKRFATASTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N S ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 126 QTADLRAGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRTIMRML 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT +  I  LA+++     ++ +A++N  +++++   + V    +   + 
Sbjct: 186 PKQRQTLLFSATFAEPIRKLARDFMNSPEQIEVAAQNTTNANVEQHVIAVDTFQKRRLLE 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        A+ G+ SQQ R   L   ++G  R
Sbjct: 246 RLIVDLDMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLSAFKEGNLR 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 306 VLVATDVAARGLDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDETEQKMF 365

Query: 357 ERLFREANVSVV 368
           E +      ++ 
Sbjct: 366 EAIKELTGNNIP 377


>gi|71987143|ref|NP_001022623.1| INitiation Factor family member (inf-1) [Caenorhabditis elegans]
 gi|124217|sp|P27639|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=Initiation factor 1
 gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
 gi|532818|gb|AAA21170.1| Initiation factor protein 1, isoform a, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 402

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 203/381 (53%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  + + +   +   G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++
Sbjct: 28  VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E+          AL +APTRELA Q+ + +  L     V +  CIGG SV  ++
Sbjct: 88  LQRIDHEDPHV------QALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQ 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+VVGTPGR+ D I    L+ S +K  VLDEADEML  GF+D I  +  S P+
Sbjct: 142 RKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQ 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++++ SAT+   +  +   + ++ +R+ +  +      I      +     + + + +
Sbjct: 202 DVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T+ + E+ F V  L G++ Q ER   ++  R G +RV
Sbjct: 262 LYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + +N  R+ +
Sbjct: 322 LITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLK 381

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            +       +   P    + I
Sbjct: 382 EIESYYTTQIEEMPESIADLI 402


>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
 gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
          Length = 496

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 185/370 (50%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I EA++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L   N
Sbjct: 8   LSAPILEAVAKQGYEKPSPIQEQAIPAILAGKDVMAAAQTGTGKTAGFTLPLLERL--AN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + ++   AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA 
Sbjct: 66  GRPARSNHVRALVLTPTRELAAQVGESVATYSKNLRLSSAVVFGGVKVNPQMLRMRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLHSQNAVKFRDVEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N+    +      V    + N +  +L     K 
Sbjct: 186 ATFSDEIRELAKGLVSNPVEIDVNPRNQTARTVKQWICPVDQKKKPNLLTKLLNKRNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANFKSGDIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++     +    + R     
Sbjct: 306 GLDIEQLPQVVNFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLTQQV 365

Query: 367 VVWEPAPSVE 376
              E     +
Sbjct: 366 FEREIIEGFK 375


>gi|260752364|ref|YP_003225257.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258551727|gb|ACV74673.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 506

 Score =  204 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 224/459 (48%), Gaps = 14/459 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E GY   T VQ A +   L  +D++  AQTG+GKT +F L +   L    
Sbjct: 22  LSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGR 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  
Sbjct: 82  CR---ARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FS
Sbjct: 139 VLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      
Sbjct: 199 ATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHT 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AAR
Sbjct: 259 AIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ ++P++ +HR GRTGR G  G ++  +    +     + +   V 
Sbjct: 319 GLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEKLMGVE 378

Query: 367 VVW--------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +           P+ S E +  + A+ + +        +   K      L +   + + +
Sbjct: 379 IPRLGNRKKNAYPSKSEETVSPKQAKPVQEKSAASSPRKAPRKTETPKKLPEDRLDSVES 438

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            F    +          PVS    ++R        +V  
Sbjct: 439 DF---PKNQAPRNTASRPVSKARTQERALRPENLRRVKP 474


>gi|332879243|ref|ZP_08446940.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682663|gb|EGJ55563.1| DEAD/DEAH box helicase [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 448

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 193/378 (51%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  ++ ++   + +AL +  +   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MDFYDLDLSDQVLDALDDMNFTECTPIQEHAIPVILEGRDMIGVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           S L   +D   P  A   + ++PTRELA Q+ + +E       V          G+   +
Sbjct: 61  SKL---SDGGYPEKAINCIIMSPTRELAQQIDQAMEGFSYYMNVSSVAVYGGNDGIRYEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E+R L  GA +++ TPGRL  H+    +++S +   VLDEAD MLD+GF DDI  I+   
Sbjct: 118 EKRGLAMGADVIIATPGRLISHLSLGNVDLSKVSFFVLDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ +MFSAT+   I  LA+   +D V V   + ++    I   A +   + + + + 
Sbjct: 178 PQERQTIMFSATMPRKIQDLARTILRDPVEV-KLAVSKPADKIVQSAYVCYEAQKVSLVK 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +         I+F S++  V      L    F+V A+  +L QQER   +   +  +  
Sbjct: 237 KLFAERPPHRVIIFASSKLKVKDMAIALGRAGFKVGAMHSDLEQQERDEVMYKFKAQQID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+ ARGID+ D++LVI+ ++  + E+ +HR GRT RA   G ++ ++ +  Q+R 
Sbjct: 297 VLVATDIVARGIDIDDIQLVINFDVPHDAEDYVHRIGRTARANNDGEAITLVSEKDQQRF 356

Query: 357 ERLFREANVSVVWEPAPS 374
             +       +   P P 
Sbjct: 357 ASIEHFLETEIEKRPLPE 374


>gi|332231227|ref|XP_003264799.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Nomascus
           leucogenys]
          Length = 644

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 90  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 150 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 208

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 209 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 268

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 269 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 328

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 329 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 388

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 389 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 448

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 449 VLEEANQAINPK 460


>gi|241895833|ref|ZP_04783129.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
 gi|241870876|gb|EER74627.1| DEAD box ATP-dependent RNA helicase SrmB [Weissella
           paramesenteroides ATCC 33313]
          Length = 512

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 136/378 (35%), Positives = 208/378 (55%), Gaps = 7/378 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + Q +  A+ + GYV  T +QE  +   +  KDV+  AQTG+GKT AFGL + 
Sbjct: 1   MKFSELGLTQDLLTAIEKHGYVEATPIQEKTIPLTMAGKDVIGQAQTGTGKTAAFGLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  EN          AL ++PTRELA+Q   EL  L     V V    GG  + R+  
Sbjct: 61  EMIDNENKDV------QALVVSPTRELAIQTQDELFKLGRDKHVRVQAVFGGADIRRQIN 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +GAHIVVGTPGRL DHIR   +N+SH+K +VLDEADEML++GF +DIE IL + P +
Sbjct: 115 GLNHGAHIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+ PAI  +   +  +   + IA++      +D   V V   ++ + +  IL
Sbjct: 175 RQTLLFSATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEKFDVLTRIL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+F  T+  V   T+ L    F+   + G+L+QQ+R+  L+  ++   ++ +
Sbjct: 235 DVQQPELAIMFGRTKRRVDELTRGLTLRGFKAAGIHGDLTQQKRTQVLKQFKNREIKILV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G SV  +  +     + +
Sbjct: 295 ATDVAARGLDISGVTYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDI 354

Query: 360 FREANVSVVWEPAPSVEA 377
            +     +      + E 
Sbjct: 355 EKLTKKRMQPLKPYTREE 372


>gi|217977138|ref|YP_002361285.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502514|gb|ACK49923.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 494

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 199/386 (51%), Gaps = 7/386 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     + +A+   GY   T +Q   +   L  +DVL  AQTG+GKT AF L + S
Sbjct: 2   TFEELGLSAKVLQAVEASGYTTPTPIQAQAIPFALTGRDVLGIAQTGTGKTAAFTLPMLS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV            V VA+ IGGVS   +   
Sbjct: 62  RLEQGRAR---ARMPRTLILEPTRELAAQVEESFVRYGVNHKVNVALLIGGVSFADQEAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA +++ TPGRL D      L ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 ITRGADVLIATPGRLLDFAERGKLLLTGIEILVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--RAVLVALSDRDNAIVNI 238
           + L FSAT+ P IT L + +  +  RV +A  +   + I     A     + R+     +
Sbjct: 179 QTLFFSATMPPEITRLTETFLHNPARVEVARASSTATTITQGLIASAPGPAKRETLRRLL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 KNAI+FC+ +  V+   K L  H F   AL G+L Q+ R  +L   + G   + 
Sbjct: 239 RSAADFKNAIIFCNRKRDVALLHKSLLTHGFNAGALHGDLDQRARMASLDAFKTGEVALI 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DVAARG+D+PD+  V++ ++ ++ E+ +HR GRTGRAG+ G+++ ++ +  Q+    
Sbjct: 299 VCSDVAARGLDIPDVSHVLNFDVPTHAEDYVHRIGRTGRAGKSGVAITIVTKADQKHIAE 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + +    S+ +    ++  + E  A+
Sbjct: 359 IEKLIGRSIDFLDGKTMADVTEDGAE 384


>gi|150396691|ref|YP_001327158.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150028206|gb|ABR60323.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 499

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 224/472 (47%), Gaps = 25/472 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L +
Sbjct: 1   MTNFADLGLSQKVLSAVTDAGYTIPTPIQIGAIPPALQRRDILGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHCERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  RV +A  +     +  R   A       R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERVEVARRSSTAITVTQRLVAAHGKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  
Sbjct: 238 ELIRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++ +   + 
Sbjct: 298 KLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDIKF 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-------EKKMVDVLL 408
           A+ + +     V W      E          L +P+     + D       ++K    + 
Sbjct: 358 ADAIEKLIGQEVEWHNGDLSE----------LPEPMESHDSRRDRGSDGRKDRKRERPVK 407

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            + D + + A                T     +   + R + R+ + G    
Sbjct: 408 TRSDHKAVTAVDNNTEELETVPERVDTVKIERNAESKDRHNGRSDRPGRAQN 459


>gi|198282005|ref|NP_001095463.1| probable ATP-dependent RNA helicase DDX17 [Bos taurus]
 gi|154757449|gb|AAI51649.1| DDX17 protein [Bos taurus]
 gi|296487004|gb|DAA29117.1| DEAD box polypeptide 17 [Bos taurus]
          Length = 650

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|322711331|gb|EFZ02905.1| ATP-dependent RNA helicase dbp-2 [Metarhizium anisopliae ARSEF 23]
          Length = 545

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 194/376 (51%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 135 VETFDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 195 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++    
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRP 313

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  +A ++Q D ++VNI S     N + + I      +   DR   
Sbjct: 314 DRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIK 373

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 374 HLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 433

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q+
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 355 RAERL---FREANVSV 367
           +A  L    +EA   +
Sbjct: 494 QARELVNVLQEAKQKI 509


>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 455

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 188/367 (51%), Gaps = 2/367 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  +   +  AL+       T +Q   +   ++ +DVL  AQTG+GKT AF L +  
Sbjct: 6   FKAF-GLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSLPVID 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+A+  R +P + P  L + PTRELA Q+   ++   A T +   V  GGVS+  +   
Sbjct: 65  ALIAKGGRPAPKT-PKVLVLTPTRELASQIAGNVKSYTAGTKLTHHVIFGGVSIRPQIEA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  IV+ TPGRL D +  + L +S +  VVLDEAD MLD+GF  D+  I+   P  R
Sbjct: 124 MRRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRMLDMGFVKDVMRIVSQLPADR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+  LA     + VRV +  E      I+    LV    +   ++  L 
Sbjct: 184 QSLLFSATMPRAMEELAAKILTNPVRVEVTPEVVTVEKINQSVFLVPQKAKKLWLIEHLA 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F  T+   ++    L +      A+ G  SQ  R  AL   + G   V +A
Sbjct: 244 KPDFEKTVIFTRTKHGANKLAADLEKAGIDARAIHGNKSQGARQKALGEFQTGTVSVLVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGI + D+  V++ +L   PE+ +HR GRT RAG+ G++V ++  + + +  ++ 
Sbjct: 304 TDIVARGIHVDDISHVVNFDLPEEPESYVHRIGRTARAGKSGIAVALVDPSERSKLRQIE 363

Query: 361 REANVSV 367
           R   ++ 
Sbjct: 364 RLTGLNF 370


>gi|329905919|ref|ZP_08274297.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547410|gb|EGF32236.1| ATP-dependent RNA helicase RhlE [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 446

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 195/383 (50%), Gaps = 3/383 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L L   L    
Sbjct: 8   LSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLLHRLSTST 67

Query: 67  DRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +  +A     AL +APTRELA QV   +        +   V  GGV ++ + + L++
Sbjct: 68  SAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINPQIKMLKH 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH+    +N+S ++ ++LDEAD MLD+GF  DI+ +L   PKKR+ L
Sbjct: 128 GVDILVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVLPKKRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I TLA         + +A  N     I  +   V    +   + ++++ + 
Sbjct: 188 LFSATFSEEIKTLADGLLNAPKMIEVARRNSTVEIIAQKIYPVDRDKKHPLLAHLIKTNN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+   ++  + L +     +A+ G  SQ  R+ AL   +DG+ +V +ATD+
Sbjct: 248 WPQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDGKLQVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +       + +  
Sbjct: 308 AARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEHEMLRDIEKLI 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
              +  E  P  E      AQ I
Sbjct: 368 KRELPKEVVPGFEPDPNARAQPI 390


>gi|218532241|ref|YP_002423057.1| DEAD/DEAH box helicase [Methylobacterium chloromethanicum CM4]
 gi|218524544|gb|ACK85129.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           chloromethanicum CM4]
          Length = 519

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 140/463 (30%), Positives = 211/463 (45%), Gaps = 24/463 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+ P I  LA  +  +  RV +A      + I+ R V       +   V       A  
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASE 244

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAIESLI 364

Query: 364 NVSVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W      SV    E D  R  +        +G E+        +           
Sbjct: 365 GQPIAWLDGDLASVSDEVEGDEPRRRRGSRRAKETKGGEEAKSGGRSTERSA-------- 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                   AP   +P S    R   R  +   +     RD  +
Sbjct: 417 --------APSSESPRSENRSRGGRRPAAERSRADAPRRDPVR 451


>gi|254805204|ref|YP_003083425.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
 gi|254668746|emb|CBA06600.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha14]
          Length = 457

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 137/411 (33%), Positives = 219/411 (53%), Gaps = 2/411 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + E     E           + P   +  Q +  +       K+   + AA
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAA 423


>gi|323693539|ref|ZP_08107743.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
 gi|323502394|gb|EGB18252.1| hypothetical protein HMPREF9475_02606 [Clostridium symbiosum
           WAL-14673]
          Length = 422

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 189/376 (50%), Gaps = 6/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E+L   GY   T +Q+ ++   L  K+V+  A TGSGKT AF + +   ++ E 
Sbjct: 14  LSDDILESLRLLGYERPTEIQQQVIPAMLEGKNVVGRAPTGSGKTAAFAIPICDKIIWEE 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL + PTREL VQV  E+  +  K  + V    GG  + ++ R L+  +H
Sbjct: 74  ------NLPQALILEPTRELTVQVQEEVFHIGRKKRLKVPAVFGGFPIDKQIRSLKQKSH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+ DHIR   L +  +  +V+DEAD MLD+GF D+++ ILD    + R+ +FS
Sbjct: 128 IVTGTPGRVMDHIRRGSLILDKVTCLVIDEADLMLDMGFIDEVKQILDLLSPECRIALFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I   A ++  D V +         + I          ++    +N+L     + 
Sbjct: 188 ATLKPEIREFAGSHIHDMVMIFTEQPEAAENAITEELFETDNENKFKVFLNVLYRENPQC 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC TR  V+   + L  H      + GEL Q+ER   +   R G  R  IATDVAAR
Sbjct: 248 CIIFCGTREMVNVLFQKLRRHRIFCGMIHGELEQKERLKTIDAFRRGAIRYLIATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GIDL ++  VI+ +  +  E  +HR GRTGR GR G +V ++    +R  +        S
Sbjct: 308 GIDLENITHVINYDFPTGRETYVHRIGRTGRNGRTGKAVSLVTAEDRRMLQMTEEYTGRS 367

Query: 367 VVWEPAPSVEAIRERD 382
           +     P      E++
Sbjct: 368 LPVLVCPESSGEEEKN 383


>gi|294909743|ref|XP_002777840.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885802|gb|EER09635.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 625

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 180/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +P  I   + + G+VN T +Q       L  +D++  A+TGSGKT+AF L  
Sbjct: 176 ITHFEEACLPDYIMVEIQKAGFVNPTPIQVQGWPVALCGRDMVGIAETGSGKTLAFLLPA 235

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELA+Q+  E +   + + +    C GGV    + 
Sbjct: 236 VVHINAQ-PYLQKGDGPIVLVLAPTRELALQIKEECDRFGSSSRISNTCCYGGVPRGPQA 294

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNG  I + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   +  I+     
Sbjct: 295 RMLQNGVEICIATPGRLIDFLESEVTNLRRVTYLVLDEADRMLDMGFEPQVRKIVSQIRP 354

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LM+SAT    +  LA++   +         +        + V V   +     +  
Sbjct: 355 DRQTLMWSATWPKDVQQLARDLCNEEPVHVTVGRSGHACHNIQQFVEVVEENGKAERLQA 414

Query: 239 LRY--------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L               A++F  T+      T+VL    +  +A+ G+  Q ER   L   
Sbjct: 415 LMRAVASASGGVWESKALIFTDTKRCADDITRVLRRDGWPALAIHGDKKQTERDWVLAEF 474

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR  + IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG  G +      
Sbjct: 475 KTGRMPIMIATDVASRGLDVKDVKYVINYDFPGTIEDYVHRIGRTGRAGAHGTAYSFFTA 534

Query: 351 NMQRRAER---LFREANVSVVW 369
           +  + A+    + REA   V  
Sbjct: 535 DKAKLAKPLIGILREAAQPVPE 556


>gi|17555296|ref|NP_499069.1| hypothetical protein T26G10.1 [Caenorhabditis elegans]
 gi|465975|sp|P34580|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
 gi|3880293|emb|CAA82362.1| C. elegans protein T26G10.1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 489

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 125/414 (30%), Positives = 223/414 (53%), Gaps = 9/414 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q + +A    G++  + +Q+A L   L+ KDV+  A+TGSGKT AF + + 
Sbjct: 44  KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL     F        L + PTRELA Q+G++ E L +  G++ AV +GGV +  +  
Sbjct: 104 QSLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAM 157

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      N+  LK +++DEAD +L++ F  +++ IL   P+
Sbjct: 158 ALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPR 217

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  ++ L +   +D  RV+++S  +   ++    + V    ++  +V +
Sbjct: 218 ERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYL 277

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H   +AIVFC+T A+  +   +L +   Q V L G++SQ++R  +L   +     + 
Sbjct: 278 LNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREIL 337

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ V+ Q      ++
Sbjct: 338 VCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQK 397

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +       +        E +   +  +   +   ++  + DEKK       ++D
Sbjct: 398 IEANLGKKLDEYKCVENEVMVLVERTQEATENARIEMKEMDEKKKSGKKRRQND 451


>gi|322700629|gb|EFY92383.1| ATP-dependent RNA helicase dbp-2 [Metarhizium acridum CQMa 102]
          Length = 552

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 194/376 (51%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 135 VETFDEAGFPRYVLDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 195 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++    
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIEQIRP 313

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  +A ++Q D ++VNI S     N + + I      +   DR   
Sbjct: 314 DRQTLMYSATWPKEVRAMAADFQTDFIQVNIGSMDLSANHRITQIVEVVSDMEKRDRMIK 373

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 374 HLEQVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 433

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q+
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 355 RAERL---FREANVSV 367
           +A  L    +EA   +
Sbjct: 494 QARELVNVLQEAKQKI 509


>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           623-39]
 gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           AM-19226]
 gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3894-4]
          Length = 422

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 187/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|59712397|ref|YP_205173.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59480498|gb|AAW86285.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 398

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 189/374 (50%), Gaps = 1/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L +   L  + 
Sbjct: 8   LSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTGKTASFVLPILEILSEDP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELA+QV   ++       +      GGV    +++ L  G  
Sbjct: 68  TKV-RAKRIRALILTPTRELAIQVEENIQQYSKHIDITSLAMYGGVDYKEQKQRLIEGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P  R+ ++FS
Sbjct: 127 VLVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    + + ++I+ +      ID     V    +   + ++++ +    
Sbjct: 187 ATLSDQVRYLAKTAINNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWNQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A     SQ+ R+  L   ++G+ +  +AT +AAR
Sbjct: 247 ALIFIETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVATGIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ +L    ++ +HR GRTGRAG KG ++  + ++  +    +       
Sbjct: 307 GIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSKDDFKNLCMIESRLGHL 366

Query: 367 VVWEPAPSVEAIRE 380
           +V +        +E
Sbjct: 367 IVRKEIEGFAPRKE 380


>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 499

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 211/446 (47%), Gaps = 6/446 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTMLEQGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV            + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFTKYGKNHKLNVALLIGGVSFGDQDAKLLRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+    L +S ++ +V+DEAD MLD+GF  DIE +    P  R+ L FS
Sbjct: 125 VLIATPGRLLDHVERGRLLLSGIEILVIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT+ P I  L   +  + V+V  +  +   ++I    V     D   R+     I     
Sbjct: 185 ATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKEDFAKRETLRELINSADN 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ ++ V+   K L  H F VVAL G++ Q+ R  AL   R G A + +A+DV
Sbjct: 245 LQNGIIFCNRKSEVAVVHKSLKRHGFNVVALHGDMDQRSRMQALDQFRTGEANLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + +   + E+ +HR GRTGRAGR G +  ++     +    + +  
Sbjct: 305 AARGLDIPAVSHVFNYDTPHHAEDYVHRIGRTGRAGRSGAAFTLVTPADTKSLAAIEKLI 364

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             S+ W    S++A+   +A+     P   +   G+  +  +    +    + A    ++
Sbjct: 365 GRSIDWREGSSLDALPPSEARPRRDRPERGERKGGERGRKGEPREEERRGARPARRREKV 424

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDD 449
                             G  R R +
Sbjct: 425 EEVDNAPIAAAEGPVAARGERRPRGE 450


>gi|332184003|gb|AEE26257.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida 3523]
          Length = 445

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL + 
Sbjct: 8   LNPLICSALEKKGYTKPTPIQAKAIPLVLKGSDVMASAQTGTGKTAGFTLPIIQRLLDQP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  
Sbjct: 68  K--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGVE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMFS
Sbjct: 126 ILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LA ++  +   V+    N     I  +   +  S + NA++++++      
Sbjct: 186 ATFSPEIKNLANDFLNNPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKEINVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++  +       +       
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEHLIGHL 365

Query: 367 VVWEPAPSVEA 377
           +  E     EA
Sbjct: 366 LPREELEGFEA 376


>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 188/362 (51%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL   GY   T +QE  +   L+  DVL  AQTG+GKT +F L L   L    
Sbjct: 10  LAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P  +   L + PTRELAVQVG+  +       +  A+  GGV +  + + +  G  
Sbjct: 70  KRAMP-KSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I    + +  ++A+VLDEAD MLD+GF   I  I+   PK+R+ ++FS
Sbjct: 129 VLVATPGRLLDLIEQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVALVPKQRQTVLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  LA +     VRV +   +     ID + + V    +   + +IL       
Sbjct: 189 ATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILAGKDVGR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   +R  ++L +      A+ G  SQ  R  AL   RDGR +  +ATD+AAR
Sbjct: 249 ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALADFRDGRIKALVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ EL + PE+ +HR GRT RAG  G+++ +   +       + +    +
Sbjct: 309 GIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDEVAYLRDIEKTIRQA 368

Query: 367 VV 368
           + 
Sbjct: 369 IP 370


>gi|296450396|ref|ZP_06892152.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296879481|ref|ZP_06903475.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
 gi|296260657|gb|EFH07496.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP08]
 gi|296429627|gb|EFH15480.1| ATP-dependent RNA helicase DeaD [Clostridium difficile NAP07]
          Length = 497

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 125/533 (23%), Positives = 233/533 (43%), Gaps = 59/533 (11%)

Query: 1   MK-IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE   + + I ++L    Y   + VQ  ++   L  ++++V ++TGSGKT +F + 
Sbjct: 1   MKYTFEKFKLNEKILKSLKSLEYNIPSRVQIEVIPKLLNGQNLVVKSKTGSGKTASFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  E +         AL + PTRELA+QV  E+  +     V  +   G   +  +
Sbjct: 61  LCENINVEYNNI------QALIVVPTRELALQVKDEISSIGRLRKVRCSAIFGKQPIKEQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+   HIVV TPGR+ DHI    + +  +K +++DEAD+M + GF + +E IL + P
Sbjct: 115 IAELKQRVHIVVATPGRIIDHINKGTIKLEDIKYLIIDEADKMFNKGFVEQMEKILLNLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDN 233
           K++ + +FSATI   I  + + Y  D   +NI       +    +     +      +  
Sbjct: 175 KEKIVGLFSATIDEEIKYICEKYIPDYSVINIEENKSDTNQRTRQIDDKIIKTNEREKYI 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++     K+ I+FC+T+  VS+    +++  F +  L  +LSQ+ R   ++  +  
Sbjct: 235 LLKELIYSENPKSVIIFCNTKEKVSKLYNKMSKEGFLIRELHADLSQERRIFVIKDFKKQ 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +++DVA+RGI + D+ LVI+ ++  + EN +HR GRTGR    G ++ ++ +  +
Sbjct: 295 KFNVLVSSDVASRGIHIDDISLVINYDVPQDKENYIHRIGRTGRKRNSGKAITIVTEKDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +  E +       +          +++ +  RI    +  +    +  K V         
Sbjct: 355 KYIENIETYIGYKI--------NELKDIEKSRITHGKILFEEYSKEILKEVS-------- 398

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                                          R + D  ++K      +         L+ 
Sbjct: 399 ------------------------------KRKKADKNSYKGKDIKLNTESEVVKLYLNA 428

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           G K+K     ++       GI    IG I VQ   ++V++     DL+ +  K
Sbjct: 429 GKKKKIRVLDIVGAFSNIKGITNDDIGVIEVQDLCSYVDILNYKGDLILKKHK 481


>gi|254237339|ref|ZP_04930662.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
 gi|126169270|gb|EAZ54781.1| hypothetical protein PACG_03411 [Pseudomonas aeruginosa C3719]
          Length = 639

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 128/498 (25%), Positives = 216/498 (43%), Gaps = 24/498 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +  A+   GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L    
Sbjct: 8   LSEALARAVEAAGYSQPTRVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAG 67

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +          L + PTRELA QV    +       +      GGV ++ + + L 
Sbjct: 68  HPDREHRHGPRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALA 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V  PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ 
Sbjct: 128 KGVDVLVACPGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA     +  R+ +   N     I+ R   +    +   + +++   
Sbjct: 188 LLFSATFSKDIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVG 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD
Sbjct: 248 AWEQVLVFTRTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+  L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + + 
Sbjct: 308 IAARGLDIDQLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKM 367

Query: 363 ANVSV---------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
               +              P V     R+A +  Q     D     E+K  D   +  D 
Sbjct: 368 TRQRIPDGDAQGFDPEAVLPEVAQPEPREAPQ-KQPRRDKDRRSSRERKPKDAQASNPDS 426

Query: 414 EKIAA-------GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG--GGSRDNFK 464
              AA          R  R G          +    + R    ++  +     G+RD  +
Sbjct: 427 NVAAAQDGTEKPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKPNRPPEVDGNRDPEE 486

Query: 465 GSSWFSLSVG-SKQKAEA 481
                  + G        
Sbjct: 487 FLDDDFDNFGNRADYVSP 504


>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 613

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 4/374 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 2   TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L +     +         L + PTRELA QV   L        +   V  GGV +  + 
Sbjct: 62  RLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D      +++S ++ ++LDEAD MLD+GF  D++ +L   PK
Sbjct: 122 ARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I
Sbjct: 182 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  
Sbjct: 242 IQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 302 VATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMMD 361

Query: 359 LFREANVSVVWEPA 372
           + R     +  +P 
Sbjct: 362 IERFTKQEIPVQPI 375


>gi|260574781|ref|ZP_05842784.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
 gi|259023198|gb|EEW26491.1| DEAD/DEAH box helicase domain protein [Rhodobacter sp. SW2]
          Length = 537

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 194/385 (50%), Gaps = 14/385 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLALDPRVLQAVLEAGYETPTPIQAQAIPHALAGRDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A  P +L + PTRELA QV    E     + +  A+ IGGVS   + 
Sbjct: 61  ITLL---GQGRAKARMPRSLVLCPTRELAAQVAENFETYAKYSKLTKALLIGGVSFGEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHHERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+   +SAT++P I  +   +  +AV++ +A +      I+   + +  + +D +    
Sbjct: 178 TRQTFFYSATMAPEIERITNTFLSNAVKIEVARQATSSETIEQALIQITPTRKDRSFADK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V   +K L +H F    + G+L Q  R+  L  
Sbjct: 238 RAVLRALIRAEGEACTNAIIFCNRKMDVDVVSKSLKQHGFNASPIHGDLDQSVRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +A+DVAARG+D+P +  V + ++ S+PE+ +HR GRTGRAGRKG +  +  
Sbjct: 298 FRDGTVHLLVASDVAARGLDIPAVSHVFNFDVPSHPEDYVHRIGRTGRAGRKGKAFTIAT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPS 374
               +    +       +     P 
Sbjct: 358 PYDDKYLAAIEHLVKQPIPRGSLPE 382


>gi|325104434|ref|YP_004274088.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324973282|gb|ADY52266.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 445

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 127/431 (29%), Positives = 199/431 (46%), Gaps = 27/431 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE+    + I  A+ E GY   T +QE  + P L  +DVL  AQTG+GKT A+ L + 
Sbjct: 3   KNFEDFKFNRQILNAIEEAGYTQPTPIQEKAIPPILNGQDVLGIAQTGTGKTAAYVLPMI 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F+      AL +APTRELA+Q+   ++     T +   V  GG+    +  
Sbjct: 63  MKL-----KFAQGDDIRALILAPTRELALQIEENVKIFSKYTDLRSVVVFGGIGPKAQAD 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA I++ TPGR  D      +    L+ +VLDEAD+M+D+GF   I  +L+  PKK
Sbjct: 118 QLAKGADILIATPGRFMDLYLDGHIVTKKLQFLVLDEADKMMDMGFMPQINKVLEIVPKK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  L++N+     +V +  +      ++     V        ++ I 
Sbjct: 178 RQNLLFSATMSEKVERLSENFLLWPTKVEVTPQATPAETVEQELYFVPNLKTKINLLKIF 237

Query: 240 RYHGAKNA--IVFCSTR--ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                  +  I+FC TR  A       +   +   V  L     Q  R N++   ++   
Sbjct: 238 VEDDPDVSKLIIFCRTRVVAENVYRFLLRRFNENHVKVLHANKGQNTRINSINSFKNDEV 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDVAARGID+  +  VI+ E+    E+ +HR GRTGRA  +G ++       +  
Sbjct: 298 RILVATDVAARGIDVSSVSHVINFEVPVVYEDYVHRIGRTGRAFSQGKAITFCNPAEEYS 357

Query: 356 AERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDP----LFLDSIQGD 399
             ++ +     +  +  PS   I            RE D Q+  +DP     F D    +
Sbjct: 358 IRKIEKLIRQQIPVKDIPSKVFIEDTAYEERQAIAREIDNQKRKEDPEFKGAFHDKKTPN 417

Query: 400 EKKMVDVLLAK 410
           +K       AK
Sbjct: 418 QKAKFKAQRAK 428


>gi|158424139|ref|YP_001525431.1| helicase [Azorhizobium caulinodans ORS 571]
 gi|158331028|dbj|BAF88513.1| helicase [Azorhizobium caulinodans ORS 571]
          Length = 582

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 142/482 (29%), Positives = 223/482 (46%), Gaps = 17/482 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + +  A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + 
Sbjct: 64  MSFSELGLSEKVLSAVAATGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 123

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   +  
Sbjct: 124 TLLEQGRAR---ARMPRTLILEPTRELAAQVEENFVRYGKNHKLNVALLIGGVSFGDQDT 180

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRL DH+    L +S ++ +V+DEAD MLD+GF  DIE I    P  
Sbjct: 181 KLLRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFT 240

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV 236
           R+ L FSAT+ P I  L   +  + VRV ++     ++ I    V         R+    
Sbjct: 241 RQTLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASANTSITQLLVASGREDYEKRETLRE 300

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I      +N IVFC+ +  V+   + L +H F VV L G++ Q  R+ AL   R G A 
Sbjct: 301 LIRNADQLQNGIVFCNRKRDVAVVHRSLQKHGFNVVCLHGDMDQHARTQALDQFRTGEAT 360

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ ++  +  +  
Sbjct: 361 LLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRTGTAIMLVTHDDAKSL 420

Query: 357 ERLFREANVSVVWEPAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
             + +    ++ W+  P  EA  RE+ ++   +     +  + +++        K + E 
Sbjct: 421 AAIEKLIGNAIPWQGEPLGEAPPREKRSRGGDRREERGERSERNKRSGRGRSERKAEVED 480

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGR-------DRFRDDSRAFKVGGGSRDNFKGSSW 468
                +R  RA   A E          R        R   ++R  +     R+       
Sbjct: 481 GV--EVRAERAPRPAREGRPEREPRPEREPRAERQPRPEREARPEREARPEREARPEGER 538

Query: 469 FS 470
             
Sbjct: 539 AR 540


>gi|193664366|ref|XP_001952053.1| PREDICTED: eukaryotic initiation factor 4A-like [Acyrthosiphon
           pisum]
          Length = 411

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 114/367 (31%), Positives = 197/367 (53%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +   
Sbjct: 44  NLKEELLRGIYGYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTATFSISILQQID-- 101

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +   AL +APTRELA Q+ + +  L          CIGG +V  + R L  G+
Sbjct: 102 ----TSLNECQALILAPTRELAQQIQKVVIALGDFMKADCHACIGGTNVRDDMRKLDTGS 157

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  K L    +K  VLDEADEML  GF+D I+ +     +  ++++ 
Sbjct: 158 HVVVGTPGRVYDMIARKSLRTQFIKIFVLDEADEMLSRGFKDQIKEVFKFLEEDIQVILL 217

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+   +  ++ ++ ++ VR+ +  E      I      +     + + + ++      
Sbjct: 218 SATMPEDVLDVSTHFMRNPVRILVQKEELTLEGIKQFYINVTKEEWKFDTLCDLYDTLSI 277

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ GE+ Q++R   ++  R G +RV I TD+ 
Sbjct: 278 TQAVIFCNTRRKVEWLTENMRLKTFTVSAMHGEMDQRQRELIMRQFRSGSSRVLITTDLL 337

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  I ++ +R  + +    N
Sbjct: 338 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEDDKRAMKDIESFYN 397

Query: 365 VSVVWEP 371
             V+  P
Sbjct: 398 THVLEMP 404


>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
 gi|187031542|emb|CAP29606.1| hypothetical protein CBG_10097 [Caenorhabditis briggsae AF16]
          Length = 486

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 131/418 (31%), Positives = 229/418 (54%), Gaps = 17/418 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q + +A    G+   + +Q+A L   L  KDV+  A+TGSGKT AF + + 
Sbjct: 44  KTFAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVL 103

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL     F        L + PTRELA Q+G++ E L +  G++VAV +GGV +  +  
Sbjct: 104 QSLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAM 157

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      N+  LK +++DEAD +L++ F  +++ IL   PK
Sbjct: 158 ALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPK 217

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  ++ L +   +D  RV+I++  +   ++    + +    ++  +V +
Sbjct: 218 ERRTYLFSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETYLVYL 277

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H   +AIVFC+T A+  +   +L +   Q V L G++SQ++R  +L   +     + 
Sbjct: 278 LNEHAGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREIL 337

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ V+ Q      ++
Sbjct: 338 VCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAYQK 397

Query: 359 LFREANVSVVWEPAPSVE----AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +  EAN+    +    VE     + ER  + +  +   ++  + DEK+       ++D
Sbjct: 398 I--EANLGKKLDEYKCVENEVMVLVERTQEAM--ENAKVEMKEMDEKRKSGKKRRQND 451


>gi|323497478|ref|ZP_08102496.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323317561|gb|EGA70554.1| putative ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 426

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 201/392 (51%), Gaps = 2/392 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +N    I +AL+E GY  LT VQ+  +    +  D+L +AQTG+GKT AF L +   +L 
Sbjct: 6   QNFSPEIVKALTECGYEKLTPVQQKAIPFARKGHDILANAQTGTGKTAAFALPIVQNILD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    A  A+ +APTRELA Q+   ++     T +      GG  +  +++ L+ G
Sbjct: 66  NAKPRQRHQA-RAVILAPTRELAAQIATNIQDYTKYTEIKTVAIYGGAKMSSQQKALEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL +H+    +++ +L+ +V DEAD MLD+GF   IE I+     K + ++
Sbjct: 125 VDVLVATPGRLIEHMDLNNVSLVNLEFLVFDEADRMLDMGFISAIENIMSGVATKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  + TLA    +   RV++A EN     + +    V    +   +  ++     
Sbjct: 185 FSATFSAQMNTLATKILRQPKRVSVARENATAETVAHVVYPVEQERKRELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   + G+ARV IATDVA
Sbjct: 245 QQVLVFVNYKETANELVKELKLDGIKAVLCHGDKAQSARRRALDEFKSGKARVMIATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG++G +V  + ++ +   +++     
Sbjct: 305 ARGLDIQNLPHVVNFDMPFLAEDYVHRIGRTGRAGQRGNAVSFVNRDEELTLQQVEMLIG 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDS 395
             +  +     E   R+   +++   P F + 
Sbjct: 365 QRIYRKELEGYEPKNRDALLEKMHSKPAFKNR 396


>gi|148263018|ref|YP_001229724.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146396518|gb|ABQ25151.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 451

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 201/373 (53%), Gaps = 4/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+P+ + + ++  G+   T +QE  L P L  KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFTDLNLPEQVLQGIAYTGFTECTPIQEKALPPALAGKDVAGQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL + ++      P AL +APTREL VQ+ ++ + L   TG  +    GGV   +++ 
Sbjct: 61  TRLL-KQEKVGTEHHPRALILAPTRELVVQIEKDAQQLGKHTGFTIQAIYGGVDYMKQKN 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV+GTPGRL D+++ K  ++ +++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKEGVDIVIGTPGRLIDYLKQKVYSLKNIEALVIDEADRMFDMGFIADLRFILRRLPPF 179

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT++  +  LA  +     +V +  E      ++     V+  ++   ++ 
Sbjct: 180 DERQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVIYHVSRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L+  + G+  +
Sbjct: 240 LLRKEGMERTMIFVNTKREAEFLFDRLNVNDFPARVISGDVEQRKRLRILEDFKSGKLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  ++     E
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGALYLE 359

Query: 358 RLFREANVSVVWE 370
            +       +  E
Sbjct: 360 DIHEYIKERIPVE 372


>gi|262396801|ref|YP_003288654.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269966728|ref|ZP_06180805.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|262340395|gb|ACY54189.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|269828651|gb|EEZ82908.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 430

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 121/427 (28%), Positives = 209/427 (48%), Gaps = 4/427 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N   S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG
Sbjct: 66  SNRSASRKTA-RALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVAALENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    ++++HL+ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + ++ +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLHSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAGLCA 430
            +A   A
Sbjct: 423 LKARRGA 429


>gi|225174307|ref|ZP_03728306.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
 gi|225170092|gb|EEG78887.1| DEAD/DEAH box helicase domain protein [Dethiobacter alkaliphilus
           AHT 1]
          Length = 424

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 127/406 (31%), Positives = 210/406 (51%), Gaps = 18/406 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + L+E G    T VQ   +   L  KD++  AQTG+GKT+AF L +   +  +    
Sbjct: 13  ELHKTLAELGISVPTPVQTQAIPALLSGKDIVAQAQTGTGKTLAFLLPILEKVKVDKPFI 72

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL I PTRELA+Q+  EL  L +  G       GG  V R+ + L+   HIVV
Sbjct: 73  ------QALIITPTRELALQITAELNKLASTVGANSLAVYGGQDVERQIKKLKGAIHIVV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ DH+R   ++ S ++ +VLDEAD+ML +GF  +++ I+  +  KR+ ++FSAT+
Sbjct: 127 GTPGRILDHMRRGTISFSGVQMLVLDEADQMLHMGFLPEVDQIIGQTSPKRQTMLFSATM 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
             +I  LAK Y K  V + I S+     +I    V      + + +  ++  +    A++
Sbjct: 187 PGSIRNLAKRYMKTPVDIKIESKKVTLDEISQLVVSTTDRAKQDTLFKLIDQYRPFLALI 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+   ++  + L EH +    L G+LSQ +R   ++  R    ++ +ATDVAARG+D
Sbjct: 247 FCRTKRRAAKLNQALLEHGYSADELHGDLSQAKREQVMKRFRQAHIQLLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V + ++  + E+ +HR GRTGRAG KG+++ ++        + + +    S+  
Sbjct: 307 VEGITHVFNYDIPQDLESYIHRIGRTGRAGEKGLALTLVAPKDSPMLQAIEKGLGYSIDN 366

Query: 370 EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
             AP     +  + QR +Q        +  +KK V     +H P K
Sbjct: 367 LNAP-----KNSEKQRRIQP-------ERQDKKSVSSQNRQHQPSK 400


>gi|118097584|ref|XP_414629.2| PREDICTED: similar to Prp5-like DEAD-box protein [Gallus gallus]
          Length = 1043

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 130/566 (22%), Positives = 251/566 (44%), Gaps = 32/566 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 387 ILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LE 445

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 446 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 505

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 506 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 565

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T   A+  LA+      + V +   +   SD++   +++   ++   ++ +L ++  K +
Sbjct: 566 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQEKGS 625

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 626 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 685

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 686 GLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELS 745

Query: 367 VVWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               PA         +  ++ + + I +   F       ++    +   +   +K A G 
Sbjct: 746 GNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALGL 805

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLSV 473
                       +    S+ + + R +D          +                  ++ 
Sbjct: 806 QDSDDEDTAVDIDEQIESMFNSKKRVKDMGTPGSSNAPTPSAGNAEKLEIAKRLALRINA 865

Query: 474 GSKQKAEARWLMPM-------LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                AEA+  +P           ++ +   +I A    P ++   ++    + +   + 
Sbjct: 866 QKNLGAEAQVFVPFHFKDVMQQATNAILRGGTIQA----PTVSAKTIAEQLAEKINAKLN 921

Query: 527 ---LDKGIQLKYLGGEKPDFRGYKSS 549
              ++K  + K  GG+   F+ Y+  
Sbjct: 922 YVPIEKQEEEKQDGGQNESFKRYEEE 947


>gi|331018940|gb|EGH98996.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 442

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 186/368 (50%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAENLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQKAIRFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG+ G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +  P  E
Sbjct: 369 RKEEPDFE 376


>gi|254672936|emb|CBA07321.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha275]
          Length = 489

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 143/445 (32%), Positives = 230/445 (51%), Gaps = 7/445 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD-PEKIA----AGFLR 422
           + E     E           + P   +  Q +  +       K+  PE  A    A   +
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPENAANDAGAACGK 432

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFR 447
           I      +  E    +L+  R R +
Sbjct: 433 IAGRSRRSRREHRTCALLQPRYRRK 457


>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
 gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
          Length = 469

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 190/384 (49%), Gaps = 14/384 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   +   L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  IHKLARGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHVKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 VLIDKGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     R+ +A +      I   AV+   S RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPARIEVARQATASETITQGAVVFTPSRRDRESSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RAVLRALIDAEGEACSNAIIFCNRKVDVDIVAKSLTKYGYNAAPIHGDLDQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R+ IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G +  +  
Sbjct: 298 FRDGSVRLLIASDVAARGLDIPAVTHVFNFDVPSHAEDYVHRIGRTGRAGRSGKAYTICT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP 373
              ++  + + +     +     P
Sbjct: 358 PRDEKYFDAVEKLLQKEIPRLDNP 381


>gi|255950466|ref|XP_002566000.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593017|emb|CAP99391.1| Pc22g21030 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 552

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+++ L  
Sbjct: 125 VKTFDEAGFPAYVLSEVKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 184

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 185 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 244 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 303

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VN+ S     N + + I          D+   
Sbjct: 304 DRQTCMWSATWPKDVRQLASDFLSDYIQVNVGSTDLSANHRITQIVEVVADFEKRDKMIK 363

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +    +   I+F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 364 HLEKIMEDRSNKCIIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGK 423

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRT RAG KG ++     +  +
Sbjct: 424 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTARAGAKGTAITFFTTDNSK 483

Query: 355 RAER---LFREANVSV 367
           +A     +  EA   +
Sbjct: 484 QARDLITILTEAKQQI 499


>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
 gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
          Length = 776

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 218/447 (48%), Gaps = 14/447 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+  
Sbjct: 207 NLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLERLIY- 265

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         L + PTREL +QV      L   T +   + +GG+ +  +   L+ G 
Sbjct: 266 --KPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAGP 323

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGRL DH        +S ++ ++LDEAD MLD  F + ++ I+     +R+ ++
Sbjct: 324 DVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTML 383

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA    K  VR+ + S       +    V +  +   DR+  +  +L  
Sbjct: 384 FSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLTR 443

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D +  + +AT
Sbjct: 444 TFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILVAT 503

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAG+ G SV ++ +  ++  + + +
Sbjct: 504 DVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEIVK 563

Query: 362 EANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +A   V     P    ++ RD  +++ +D   +  ++ +EK+M       H   +I++  
Sbjct: 564 KAKFPVKARVIPQEVILKFRDLIEKLEKDVYAVLCLEKEEKEMA------HSEAQISSAQ 617

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFR 447
            R+ ++        T       R + R
Sbjct: 618 KRLTKSEDEKQLPRTWFQTNEERKKDR 644


>gi|237755972|ref|ZP_04584559.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691876|gb|EEP60897.1| ATP-dependent RNA helicase DbpA [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 405

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 198/375 (52%), Gaps = 12/375 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  N+ +   ++L E GY   T +QE  +   +  KD++  AQTG+GKT AFG+ + 
Sbjct: 6   KTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAFGVPIV 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  +        AL + PTRELA+QV +E++ L     V      GG S+  +  
Sbjct: 66  EKVNPKQKKV------QALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQIN 119

Query: 120 DLQNGAHIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+ G+ +VV          +    LN+ ++K  VLDEAD ML++GF DDIE I+   P+
Sbjct: 120 FLKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPE 179

Query: 179 KRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R++L+FSAT+   I     +   ++   + +  +      I      V   D+   +  
Sbjct: 180 DRQILLFSATMPKEILELAEEFLNENYETIKVKPDEVTVEKIKQIIYRVNPRDKFKKLTE 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  + A+  I+F  T+       + L E  F   A+ G+ SQ++R   L   R G+ ++
Sbjct: 240 VLSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  ++LVI+  L  + E+ +HR GRTGRAGR+G ++ ++  +  ++ +
Sbjct: 300 LVATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTSSEDKQLQ 359

Query: 358 RLFR--EANVSVVWE 370
            + +  +AN+ V+ E
Sbjct: 360 NIQKKTKANIEVINE 374


>gi|261364093|ref|ZP_05976976.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
 gi|288567659|gb|EFC89219.1| ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC 25996]
          Length = 471

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 240/494 (48%), Gaps = 49/494 (9%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  AL+E+GY N T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNPFASLGLGSELVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT +P I  LAK++      V +A++N   ++++   + V    + N + 
Sbjct: 181 PKQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                              EAI+E          L  + +  +  +  +      D +  
Sbjct: 361 -------------------EAIKE----------LTGNDLAVERIEGFEPQWWGTDADGD 391

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           AA             +     S  S R+R   ++R+ +     R++    S         
Sbjct: 392 AA----------TDTQHAPTRSRGSDRNRSERNNRSERNERNERNDRGDKSP------KA 435

Query: 477 QKAEARWLMPMLCR 490
            KA+       +  
Sbjct: 436 DKADPGSACGTIAG 449


>gi|157371914|ref|YP_001479903.1| ATP-dependent RNA helicase SrmB [Serratia proteamaculans 568]
 gi|157323678|gb|ABV42775.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 441

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 201/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL ++GY   T++Q   + P +  +DVL SA TG+GKT AF L +   LL  
Sbjct: 10  ELDERLINALRDKGYERPTAIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +  ++        S   +   + +      +  +   +V++L+   
Sbjct: 188 SATLEGDAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVVHKTALLVHLLKQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +++F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VQKSVIFVRKRERVHELAAWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +      ++ R  
Sbjct: 308 AARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKVGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKI 416
           N      V+ E  PS +   E+   +  +  +   +   ++ K+   V +   D + +
Sbjct: 368 NEPLKARVIEELRPSTKVPSEKSNGKPSKKVIAKRAADKEKNKEKAKVKVRHRDAKNV 425


>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
 gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
          Length = 443

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 123/431 (28%), Positives = 207/431 (48%), Gaps = 27/431 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A++E GY   T +Q   +   L  KD++  AQTG+GKT +F L +  
Sbjct: 2   TFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMID 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + + 
Sbjct: 62  ILAHGRAR---ALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQVKA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL D      + ++    +V+DEAD MLD+GF  DIE I    P +R
Sbjct: 119 LEKGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRMLDMGFIPDIEHICTKLPAQR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  LA  +  +   + +A      ++I    V V    +  A+  +L 
Sbjct: 179 QTLLFSATMPPVIKKLADRFLSNPKSIEVARPATASTNIAQHLVKVDARKKREALRALLD 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A++FC+ + +V    K L    ++   + G++ Q  R   L+  RDG   + +A
Sbjct: 239 GQQVQSAVIFCNRKTTVRELNKSLQRDGYKSGEIHGDIDQASRIAELERFRDGTVNILVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARG+D+  +  V + +   +P++ +HR GRTGRAG KG++   + ++     + + 
Sbjct: 299 SDVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVTKDDAEAIDNIQ 358

Query: 361 REANVSVVW----------------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           +     + +                +PAP+    R R A+R+  D    D  + + K   
Sbjct: 359 KLIGTKIDYADFAGETTDAEPKAEGKPAPT----RTRRAERL--DEQRKDQRREERKAPA 412

Query: 405 DVLLAKHDPEK 415
                   PE 
Sbjct: 413 SGPRQSKMPED 423


>gi|296314358|ref|ZP_06864299.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
 gi|296838913|gb|EFH22851.1| ATP-dependent RNA helicase RhlE [Neisseria polysaccharea ATCC
           43768]
          Length = 457

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 144/444 (32%), Positives = 235/444 (52%), Gaps = 13/444 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHIPQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV + T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDQVTRDLIRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPTQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFEAIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD----PEKIA----AG 419
           + E    +E    R  ++    P   ++ +  ++   +   A+ +    PE  A    A 
Sbjct: 373 LIE---RIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESAKAQREKNTRPETTANDAGAA 429

Query: 420 FLRIHRAGLCAPEEITPVSLVSGR 443
             +I      +  E  P +L+  R
Sbjct: 430 CGKIAGRSRRSRREHQPCALLQPR 453


>gi|84394092|ref|ZP_00992827.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|86146725|ref|ZP_01065046.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
 gi|84375283|gb|EAP92195.1| Superfamily II DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|85835572|gb|EAQ53709.1| Superfamily II DNA and RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 120/419 (28%), Positives = 213/419 (50%), Gaps = 7/419 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPELVKALTECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQHLLN 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + S  +A   L +APTRELA Q+ + ++     T + V+   GG  +  + R L+ G
Sbjct: 66  SGKKASRGTA-RGLILAPTRELAAQIAQNIKDYVKYTELSVSAVYGGNKMSSQVRQLELG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    ++I++L+ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHLEAGNVSIANLEFLVFDEADRILDMGFINAVRKIMLDVETSPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+ +  +   R+++  EN   S + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNQLSVDILRKPKRISVERENSTASTVGHVVYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL   ++GRARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVLCHGDKAQSARRRALDDFKEGRARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ ++    E+ +HR GRTGRAG++G ++  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAISFVNREEELTVVQVETLIQ 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +     P  E  ++RDA         L++    + +      A  +P+  A+   R+
Sbjct: 365 QRIRRVEQPGYEP-KKRDA-----YIEKLNTKSAYKNRQGRKNNANEEPQDQASAERRL 417


>gi|167628011|ref|YP_001678511.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598012|gb|ABZ88010.1| ATP-dependent RNA helicase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 445

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 191/371 (51%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L +   LL + 
Sbjct: 8   LNPLICSALEKKGYTKPTPIQAKAIPLVLKGNDVMASAQTGTGKTAGFTLPIIQRLLDQP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +   L+ G  
Sbjct: 68  K--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVVFGGVSINPQMMKLRKGVE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      L    L   VLDEAD MLD+GF +D++ I    PKK + LMFS
Sbjct: 126 ILIATPGRLLDLYSQNALKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP IT+LA  +      V+    N     I  +   +  S + NA++++++      
Sbjct: 186 ATFSPEITSLANEFLDSPQSVSADVVNTTVKKITQKIYTLDKSTKINALISLIKDQDLHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKISEKLNNAGITSSAIHGNKSQTARTKALADFKSKDINVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L +  E+ +HR GRTGRAG+ G+++ ++  +       +       
Sbjct: 306 GIDIAQLPCVINLDLPNVAEDYVHRIGRTGRAGQDGLAISLVSADEVESLSNIEHLIGHL 365

Query: 367 VVWEPAPSVEA 377
           +  E     EA
Sbjct: 366 LPREELEGFEA 376


>gi|19113315|ref|NP_596523.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe 972h-]
 gi|10720389|sp|P24782|DBP2_SCHPO RecName: Full=ATP-dependent RNA helicase dbp2; AltName:
           Full=p68-like protein
 gi|173419|gb|AAA35319.1| p68 RNA helicase [Schizosaccharomyces pombe]
 gi|3810840|emb|CAA21801.1| ATP-dependent RNA helicase Dbp2 [Schizosaccharomyces pombe]
          Length = 550

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 112/387 (28%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  + + + + G+   T +Q+      +  +D++  + TGSGKT+++ L  
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E       + +      GGV    + 
Sbjct: 181 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQI 239

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNA 234
            R+ +MFSAT    +  LA++Y  D ++V + S +         I           R   
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +A+ G+ +Q ER   L   R G+
Sbjct: 360 DIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 419

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +      +  +
Sbjct: 420 SPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAK 479

Query: 355 RAER---LFREANVSVVWEPAPSVEAI 378
           +A     +  EA   +     P +E +
Sbjct: 480 QARELVSILSEAKQDI----DPKLEEM 502


>gi|283779400|ref|YP_003370155.1| DEAD/DEAH box helicase domain-containing protein [Pirellula staleyi
           DSM 6068]
 gi|283437853|gb|ADB16295.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
          Length = 458

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 195/373 (52%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL + GY   T +Q  ++   L   DV+  A+TG+GKT +F + +   L  E
Sbjct: 18  DLSDQMMAALEKAGYEYPTPIQAGLIPRALEGVDVVGQARTGTGKTASFVIPILELLDIE 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 A  P AL + PTRELAVQV  E+  L     +  A   GG  +  +   L+ G 
Sbjct: 78  RG----APTPQALILVPTRELAVQVRDEVVKLSEGLKINCAAVYGGKPIKSQVDKLKKGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DHI    ++ +H++ VVLDEAD MLD+GFR DIE IL   P++R+ L+ 
Sbjct: 134 HVVVGTPGRVLDHIARGTIDFTHIECVVLDEADRMLDIGFRPDIERILKRCPRERQTLLL 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  LA+ Y  +   +N +  +     I+ +   V    + + ++ +L     K
Sbjct: 194 SATVPPPIAKLAQRYMYEPEMLNFSPADVSVDTIEQKYFTVEHDRKFDLLMKLLLREEPK 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFC T+    +  + L + L    A+ G+LSQ +R   +   RDG  R  +ATDV  
Sbjct: 254 QAIVFCRTKRGTDKVYQKLTKKLGNTAAIHGDLSQGQRDRVMAGFRDGSVRYLVATDVIG 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  +++ ++    ++ +HR GRTGR GR+G++   +  +      R+    N 
Sbjct: 314 RGIDVSTVSHIVNFDIPVFCDDYVHRVGRTGRMGREGVAYTFVCPDEGHELTRIEERINK 373

Query: 366 SVVWEPAPSVEAI 378
            +  +     E +
Sbjct: 374 LLKRDEMRDFEPV 386


>gi|319893030|ref|YP_004149905.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162726|gb|ADV06269.1| Cold-shock DEAD-box protein A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463915|gb|ADX76068.1| DEAD-box ATP dependent RNA helicase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 495

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 225/483 (46%), Gaps = 21/483 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F  +   +   E L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 1   MQKFTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILGQAQTGTGKTGAFGIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           AL +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 61  IEKVVGKE-------GVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    ++ ++LDEADEM+++GF DD+ +I+D  P 
Sbjct: 114 KSLKRGPQIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGFIDDMRYIMDKLPS 173

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 174 ENRQTMLFSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEYYTIVKELEKFDTFTN 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 234 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG+ G++V  +         
Sbjct: 294 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKHGIAVTFVNPIEMDYIR 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVL-LAKHDPEK 415
           ++ +     +     P  + + +     I  +   ++D+ +    + +    L  +D  +
Sbjct: 354 QIEQTNRRQMRALRPPHRKEVLKAREDEIKSKVQSWMDAAKEPRVENIAKQLLETYDQTE 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +    L      L    +   V L   +   R + R+ K      +N + S       G 
Sbjct: 414 LVTALL----QELVESNDEVDVQLTFEKPLARKNGRSPKGNRKGGNNKRHSK-----AGR 464

Query: 476 KQK 478
             K
Sbjct: 465 NHK 467


>gi|241762057|ref|ZP_04760141.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373523|gb|EER63110.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 506

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 223/459 (48%), Gaps = 22/459 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E GY   T VQ   +   L  +D++  AQTG+GKT +F L +   L    
Sbjct: 22  LSKELLQAVAELGYEEPTPVQATAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGR 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  
Sbjct: 82  CR---ARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FS
Sbjct: 139 VLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      
Sbjct: 199 ATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHT 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AAR
Sbjct: 259 AIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ ++P++ +HR GRTGR G  G ++  +    +     + +   V 
Sbjct: 319 GLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAIAAIEKLMGVE 378

Query: 367 VVW--------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +           P+ S EA+  + A+   +      +     K        K  PE    
Sbjct: 379 IPRLGNRKKNAHPSKSEEAVSPKQAKPAQEKS----AAPSPRKAPRKAETPKKSPED--- 431

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGR-DRFRDDSRAFKVG 456
              R+       P+   P +  S    + R   RA +  
Sbjct: 432 ---RLDSVESDFPKNQAPRNTASRPVSKARTQERALRPE 467


>gi|261188002|ref|XP_002620418.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
 gi|239593429|gb|EEQ76010.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis SLH14081]
          Length = 548

 Score =  203 bits (516), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 190/377 (50%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 129 VETFDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 189 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA+++  D ++VNI S +   +  I     +V+  ++ + +  
Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            L     +N     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 368 HLDRIMEENKSAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-- 351
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  
Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487

Query: 352 -MQRRAERLFREANVSV 367
              R    +  E+   +
Sbjct: 488 KQARDLVSILTESKQQI 504


>gi|288924231|ref|ZP_06418263.1| DbpA RNA-binding domain protein [Frankia sp. EUN1f]
 gi|288344426|gb|EFC78923.1| DbpA RNA-binding domain protein [Frankia sp. EUN1f]
          Length = 280

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 21/277 (7%)

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V++ ++ ++PE+ +HR GRTGRAGR G ++ ++    +    
Sbjct: 11  LVATDVAARGLDVERVTHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLA 70

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDP-- 413
            + +     +     P+ E +  R   +                 + +V     +HD   
Sbjct: 71  AIEKATRQPLAEMELPTAEDVNARRVAKFHDAITAALDAPAHAVFRDLVLGYTREHDVPL 130

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             IAA    + R        + P S    R+R            G     +  + + + V
Sbjct: 131 ADIAAALAVMTRQ-EPGEFLLPPDSAPPVRER---------PARGVGGPRRVYAVYRIGV 180

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD----LLRRTVKLDK 529
           G +Q+     ++  L    G+ R   G I ++ D + VE+ AD        L RT    +
Sbjct: 181 GHRQRVTPGQIVGALANEGGLARADFGRIDIRADYSLVELPADLTKATQRALTRTRIAGQ 240

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
            + L+    E+P        G   +     + +R +R
Sbjct: 241 PLNLR---AERPSRESGARPGTGRRGKPAPSARRTRR 274


>gi|84515959|ref|ZP_01003320.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
 gi|84510401|gb|EAQ06857.1| DEAD/DEAH box helicase [Loktanella vestfoldensis SKA53]
          Length = 447

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 196/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +   +   L E+G  + T +Q   +   +  +DV+  AQTG+GKT AFGL +
Sbjct: 1   MMDFDMLGLAPRLIAVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    + +P  A   L +APTRELA Q+   L      + + VA+ +GG  +  + 
Sbjct: 61  IHALMKAGVKPNP-KAVRGLVLAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGITAQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  ++V TPGRL D +  + + +     +VLDEAD+MLD+GF   +  I     K
Sbjct: 120 KRLAGGVDLLVATPGRLIDLLDRRAVRLDETVYLVLDEADQMLDMGFIHALRRIAPLLAK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ +MFSAT+   ++ LA  +  DAVRV +    +    I      VA + + + +V++
Sbjct: 180 DRQTMMFSATMPKLMSELADAFLTDAVRVQVNPPGQAVKKIAQSVHFVAQAAKTDLLVDL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L    F   ++ G  SQ +R  A++  + G+ RV 
Sbjct: 240 LDKHRDELALVFGRTKHGCEKLYKTLEAKGFAAASIHGNKSQGQRERAIEAFKAGKVRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + +L +  EN +HR GRT RAG  G ++ ++  +     + 
Sbjct: 300 VATDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGSAIALVAPDEMIELQD 359

Query: 359 LFREANVSV------VWEPAP 373
           + +    ++       WE  P
Sbjct: 360 IEKAMKETIPVASGRPWEIMP 380


>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 492

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 211/490 (43%), Gaps = 51/490 (10%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + + +AL   GY   T +Q+  +   L  +D+L  AQTG+GKT AF + L  
Sbjct: 28  SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87

Query: 61  TLLAENDRFSPASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ ++ +           AL + PTRELA+Q+            +   V  GGVS H +
Sbjct: 88  -LMHQDQQAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKFLDLKSLVIFGGVSQHPQ 146

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL D I    + +  +K  VLDEAD MLD+GF  D++ ++   P
Sbjct: 147 TEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVQRVIVKLP 206

Query: 178 KKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           ++R+ L FSAT+ P I T      + +  +V +   +     I      V  +D+ N ++
Sbjct: 207 EQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVTPVSSTAETITQSMYFVNKNDKRNLLL 266

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+    K  +VF  T+    R  K L +      A+ G  SQ  R  AL   +  + R
Sbjct: 267 HILKDKAIKTLLVFTRTKHGADRVVKDLHKAEITAEAIHGNKSQNARQRALNNFKSQQTR 326

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARGID+ +L  V++ EL + PE  +HR GRTGRAG  G+++       +   
Sbjct: 327 VLVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGADGIAISFCEPEEKAFL 386

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + + +  +  +  E                                  +      D    
Sbjct: 387 KDILKLISREIPVE---------------------------------TEHPFHNGD---- 409

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD---SRAFKVGGGSRDNFKGSSWFSLSV 473
           +        A    P++  P     G  R R     SR  + G G+     G      + 
Sbjct: 410 SMALPAPKPAPQQKPKQQHPRDKKGGFSRNRQGVVQSRDARPGAGAGKPNSGKP----NG 465

Query: 474 GSKQKAEARW 483
           G  Q  + + 
Sbjct: 466 GRPQGGKPKD 475


>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
 gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 616

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 4/374 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A+ E+GY N T +Q   +   L   D+L  AQTG+GKT AF L +  
Sbjct: 5   TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 64

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L +     +         L + PTRELA QV   L        +   V  GGV +  + 
Sbjct: 65  RLASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQI 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  ++V TPGRL D      +++S ++ ++LDEAD MLD+GF  D++ +L   PK
Sbjct: 125 ARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 184

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L+FSAT S  I  LA    ++   + +   N     I      V    +   +++I
Sbjct: 185 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 244

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +     +VF  T+   +   + L ++    +AL G  SQ  R+ AL+  + G  R  
Sbjct: 245 IQENNWSQVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELRAL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAGR+G +V ++  + +     
Sbjct: 305 VATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMMD 364

Query: 359 LFREANVSVVWEPA 372
           + R     +  +P 
Sbjct: 365 IERFTKQEIPVQPI 378


>gi|227822081|ref|YP_002826052.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341081|gb|ACP25299.1| ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 501

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 199/374 (53%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   + P L+ +D+L  AQTG+GKT +F L +
Sbjct: 1   MTNFADLGLSQKVLSAVTDAGYATPTPIQAGAIPPALQRRDILGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + +A+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  RV +A      + +  R           R    
Sbjct: 178 TRQTLFFSATMPPEIQKLADRFLQNPERVEVARPASTANTVTQRFVAAHGKDYEKRAVLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R   L   +DG  
Sbjct: 238 DLIRAQGELKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGASFTIVTKRDTKF 357

Query: 356 AERLFREANVSVVW 369
           ++ + +    +V W
Sbjct: 358 SDAIEKLIGQTVEW 371


>gi|163755968|ref|ZP_02163085.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161324139|gb|EDP95471.1| putative ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 411

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 199/372 (53%), Gaps = 1/372 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  + + I  AL E+ Y   T VQE  +   L +KD++VSAQTG+GKT A+ L + 
Sbjct: 1   MQFKELKLNKPIIRALFEKNYEEPTLVQERAIPVILTKKDIIVSAQTGTGKTAAYALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + D         AL + PTRELA+Q+    +     T +   V  GG S+  ++ 
Sbjct: 61  QLLFDKQDAPKKGKKIKALVVCPTRELAIQIEENFQTYSKYTNLRTGVIFGGASIEPQKD 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D  +   +N+ +++ +VLDEAD MLD+GF DD++ I    P  
Sbjct: 121 MLKKGIDILVATPGRLLDLHKQDVVNLDYVEILVLDEADLMLDMGFIDDVKKIERLCPDG 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++L+FSAT+   +  LA +  K    V ++  +     +D     V    +    +++L
Sbjct: 181 KQILLFSATMPYKVEHLANSILKSPAYVEVSPTSSAAKGVDQVLYYVPKPKKIELCLHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R     N I+F  T+  V +  K L  + ++V ++ G+ SQ  R  AL   + G A++ I
Sbjct: 241 RNTIKGNVIIFRRTKYGVDKLEKTLLRNNYKVASIHGDKSQNLRQEALNAFKKGEAKIFI 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ +++ VI+ ++ +  E  +HR GRT RAG  GM++     + +   + +
Sbjct: 301 ATDVAARGIDIKNVDAVINFDIPNVSETYVHRIGRTARAGASGMALSFCSADEKNYIKDI 360

Query: 360 FREANVSVVWEP 371
            +  N ++  E 
Sbjct: 361 QQLINTTIHVEE 372


>gi|257093622|ref|YP_003167263.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046146|gb|ACV35334.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 491

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 201/377 (53%), Gaps = 4/377 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++     +  A++++GY   T +Q   +   L  +D++  AQTG+GKT AF L L   
Sbjct: 3   FDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLLQR 62

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +L   +   SPA  P+  L +APTRELA+QV   +        +  A   GGV +  +  
Sbjct: 63  ILPFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQIA 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +++ G  ++V TPGRL D I  + LN   ++A+VLDEAD MLD+GF  D+  I++  P++
Sbjct: 123 EIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLPQQ 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA    K  V + +A  N     I +R   VA   +   +V +L
Sbjct: 183 RQSLLFSATFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAEAKRALLVKLL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R       +VF  T+   ++  + L        ++ G+ SQQER  AL+  +DG   V +
Sbjct: 243 RSSDFNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGSVLVLV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ EL   PE+ +HR GRTGRAG+ G +V ++  +       +
Sbjct: 303 ATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVPYLVDI 362

Query: 360 FREANVSVVWEPAPSVE 376
            +   + V     P  E
Sbjct: 363 EKLIRIQVEQIVVPGFE 379


>gi|307189252|gb|EFN73695.1| Probable ATP-dependent RNA helicase DDX46 [Camponotus floridanus]
          Length = 1028

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 122/475 (25%), Positives = 222/475 (46%), Gaps = 11/475 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 378 LEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLAD 436

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+GR+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 437 GDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 496

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 497 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 556

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL ++  K + 
Sbjct: 557 FPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEEDQKFYKLLEILGHYQDKGSI 616

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +  +  ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 617 IIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKLLVATSVAARG 676

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I    +R A  + R   ++ 
Sbjct: 677 LDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAGDILRAHELAG 736

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P        +A +  D +++     F       ++    +   K   +K A G  
Sbjct: 737 VPVPEPLRQLWEGYKARQAADGKQVHTGGGFSGKGFKFDESEAALANEKKKFQKAALGLQ 796

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                 +    +    S+++ +   R+ +R              S+   L +  +
Sbjct: 797 DSDDEDIENDIDQQIESMLAPKRTVREIARPTATNITVPGQPVPSATDKLELARR 851


>gi|289619969|emb|CBI53413.1| unnamed protein product [Sordaria macrospora]
          Length = 602

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 170 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 229

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 230 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 288

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 289 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 348

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  + ++VNI S +   +  I     +V+ S++ + ++ 
Sbjct: 349 DRQTLMWSATWPKEVRNLASDFLTNFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 408

Query: 238 ILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 409 HLEKIMEGRENTNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 468

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + 
Sbjct: 469 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 528

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 529 SKQARELVGVLQEAKQQI 546


>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 498

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 202/378 (53%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +  ++  +G+   T +Q       L  +DV+  AQTGSGKT++F L     + A+ 
Sbjct: 68  FPEYLMSSIRAQGFDAPTPIQCQAWPMALTGRDVVAIAQTGSGKTISFALPAMLHINAQ- 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+AL +APTRELAVQ+ +E     + + +      GG     + RDLQ G  
Sbjct: 127 PLLAPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVE 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 187 IVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA ++ +D ++VNI S     + +I     + +  ++ N ++  L    A+
Sbjct: 247 ATWPKDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVCSDFEKRNKLIKHLDQISAE 306

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           NA  ++F +T+      TK L +  +  +A+ G+  Q+ER   L   + GR+ + IATDV
Sbjct: 307 NAKVLIFVATKRVADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPILIATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LF 360
           A+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAG KG+S      +  + A     + 
Sbjct: 367 ASRGLDVKDVGYVINYDFPNNCEDYIHRIGRTGRAGMKGISYTYFTTDNAKSARELIGIL 426

Query: 361 REANVSVVWEPAPSVEAI 378
           REA  +V     P +E +
Sbjct: 427 REAKATVP----PQLEEM 440


>gi|33591417|ref|NP_879061.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33571059|emb|CAE40549.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332380818|gb|AEE65665.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 476

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 212/462 (45%), Gaps = 11/462 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+   
Sbjct: 12  LADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTK 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    
Sbjct: 72  PAARKPGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    D   V++   N     +     LV    + + + +++R  G   
Sbjct: 192 ATFSDEIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +     VA+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVAVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R     
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKP 371

Query: 367 VV------WEPA---PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +       W P    P+ E  R    QR   D       +  +++          P   A
Sbjct: 372 IERRAVDGWTPPAGGPTAED-RADRGQRAGGDN-RAPQARDGQRRATGAHPQGSAPRNAA 429

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
                  R     P+   P    + R      +R    G   
Sbjct: 430 GPRADAKRNDAGRPQGRAPGETGATRAPAPARNRPVGNGTRG 471


>gi|70985190|ref|XP_748101.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
 gi|66845729|gb|EAL86063.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus fumigatus Af293]
          Length = 505

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F + +  
Sbjct: 111 TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ 170

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 171 VID------TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 225 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 285 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 344

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 345 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 404

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 405 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 464

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 465 ELYYSTQIDEMPM 477


>gi|254431629|ref|ZP_05045332.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
 gi|197626082|gb|EDY38641.1| DNA and RNA helicase [Cyanobium sp. PCC 7001]
          Length = 437

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 2/367 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +A++E+GY   + +Q   +   L   DV+ +AQTG+GKT  F L +   L       
Sbjct: 13  PILKAVAEKGYTTPSPIQLECIPTVLAGHDVMAAAQTGTGKTAGFTLPMLERLRH--GPH 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +      AL + PTRELA QV   +        +   V  GGV ++ +   L+ GA I+V
Sbjct: 71  ARGGVVRALVLTPTRELAAQVAENVAAYGRYLDLRSDVVFGGVKINPQINRLRAGADILV 130

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  + + + +  ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FSAT 
Sbjct: 131 ATPGRLLDLQQQRAIRLDRVEVLVLDEADRMLDMGFIRDIQKLLALLPPKRQNLLFSATF 190

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           SP+I  LA       V++    EN+    +++      ++ +   + +++  +  +  +V
Sbjct: 191 SPSIRKLAHGLLHQPVQLQATPENQAAPTVEHLLHPCDMARKPELLTHLIASNDWQQVLV 250

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +R    L     +  A+ G  SQ  R+ AL   + G  RV +ATD+AARGID
Sbjct: 251 FSRTKHGANRMADRLCAAGLEAAAIHGNKSQGARTRALAGFKTGEVRVLVATDLAARGID 310

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++          + R    S+  
Sbjct: 311 IHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHPGHAISLVAAEEHELLGAIERLIGTSLPS 370

Query: 370 EPAPSVE 376
           E  P  E
Sbjct: 371 ETVPGFE 377


>gi|90021156|ref|YP_526983.1| DNA topoisomerase III [Saccharophagus degradans 2-40]
 gi|89950756|gb|ABD80771.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 398

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 202/374 (54%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL++ GY   T++QE  + P L  +DVL  AQTG+GKT +F L +  T   + 
Sbjct: 8   LCDPILQALNDVGYEAPTAIQEQAIPPILAGRDVLAKAQTGTGKTASFVLPILQTFKDKA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R +      AL + PTRELA+QV   +    A   +     +GGV +  ++  L  G  
Sbjct: 68  NRRAKRIK--ALILVPTRELAIQVEDNIRLYGAHLSLTSMAMVGGVDIEPQKAKLVEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + L+   L+ +VLDEAD MLD+GF  DI  I++  P++R+ L+FS
Sbjct: 126 ILVATPGRLIDLMHQRALHFDELEFLVLDEADRMLDMGFIGDINKIIERLPERRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    +AV ++IA++ +    I    V V   ++   + +++  +G K 
Sbjct: 186 ATLSDKVRLLAKTAIVNAVEISIAADKKSTPPITQWLVTVDKHNKSALLTHLINENGWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  ++    SQ  R+  L   + G+    +AT +AAR
Sbjct: 246 ALIFIRTKHGAAKLVTQLEKRGIKAESIHSGRSQAVRTQLLADFKAGKIGFLVATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL+ V++ +L  +  + +HR GRTGRAG  G +V +I  +  +R   +       
Sbjct: 306 GIDIDDLDRVVNYDLPDDAHDYVHRIGRTGRAGVSGEAVSLISMDDFKRLCAIESRLGHI 365

Query: 367 VVWEPAPSVEAIRE 380
           +  +     +A++E
Sbjct: 366 IDRKEVAEFKAVKE 379


>gi|302812625|ref|XP_002987999.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
 gi|300144105|gb|EFJ10791.1| hypothetical protein SELMODRAFT_269342 [Selaginella moellendorffii]
          Length = 505

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 187/370 (50%), Gaps = 6/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + + + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L     + A+
Sbjct: 91  SFPDYVLQEVLKAGFKEPTAIQAQGWPMALKGRDLVGLAETGSGKTLAYLLPAIVHVNAQ 150

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+ L +APTRELAVQ+ +E     + + +      GG     + RDLQ G 
Sbjct: 151 -PYLAPGDGPIVLVLAPTRELAVQIQQESAKFGSSSKIKSTCIYGGAPKGPQIRDLQRGV 209

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 210 EIVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYW 269

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA  +  D  +V I S + + +  I     +V   ++   ++ +L     
Sbjct: 270 SATWPKDVEQLANQFLHDPYKVTIGSSSLKANHSIAQHVEVVNDYEKYQKLIKLLDEFMD 329

Query: 245 KNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              I +F  T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATDV
Sbjct: 330 GGKILIFMETKRGCDQVTKQLRMEGWPALSIHGDKSQAERDWVLSEFKTGKSPIMTATDV 389

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LF 360
           AARG+D+ D+  VI+ +   + E+ +HR GRTGRAG KG +      +  + A     + 
Sbjct: 390 AARGLDVKDIRYVINYDFPGSCEDYVHRIGRTGRAGAKGTAYTFFTVSNAKHARELVSIL 449

Query: 361 REANVSVVWE 370
            EA   +  E
Sbjct: 450 SEAGQRITPE 459


>gi|307720439|ref|YP_003891579.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978532|gb|ADN08567.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 518

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 130/423 (30%), Positives = 216/423 (51%), Gaps = 10/423 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     I +++   G+   + +Q   +   L  +D++  A TG+GKT AF L + S
Sbjct: 20  TFDSLGLKPEILKSVKFAGFTIPSPIQAQAIPIILEGRDMVGQAHTGTGKTAAFSLPVLS 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +        +   L I PTRELA QV  E+       GV      GG S  R+   
Sbjct: 80  NMKLDG-------SVEMLVITPTRELATQVSDEIFKYGRNLGVKTVTVYGGSSYKRQLDL 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  GA +VV TPGR+ D ++   LN      VVLDEADEMLD+GF DDI  I    P  R
Sbjct: 133 IGRGASVVVATPGRMLDLLKRNMLNNFAPSVVVLDEADEMLDMGFLDDINEIFSYLPTNR 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA    KD   V+I      ++DI+    ++   +RD+AI+ ++ 
Sbjct: 193 QTLLFSATMPQPIKNLANRILKDPAFVSITKGETTNTDIEQEYYVIDEHERDDAIIRLMD 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K A+VFC T++ V R + VL+   +    L G++ Q++R   ++  ++   +V +A
Sbjct: 253 AEDTKKAVVFCRTKSEVDRLSNVLSNAGYLANGLHGDMEQRQRETVIKGFKNDSVKVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI + ++  V +  +  +PE+ +HR GRTGRAG KG ++ ++     +  +R+ 
Sbjct: 313 TDVAARGIHVNNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEFKELQRIK 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           ++   S+     PS   ++     ++++  +    I  +  K++D L    D E I    
Sbjct: 373 QKVGTSMNHAFVPSKNDLKASTVDKMVK-SIEDQKIYDEAHKVLDRLKEDIDEETIMFKL 431

Query: 421 LRI 423
           + +
Sbjct: 432 ISM 434


>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 443

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 127/410 (30%), Positives = 209/410 (50%), Gaps = 13/410 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I EA  + G+ N T +Q   +   L  KD++  AQTGSGKT AF + +  
Sbjct: 14  TFEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQ 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      +  S    L +APTRELAVQ+  ++E L A  GV  AV +GG+    +   
Sbjct: 74  ALL------AKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMA 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+VGTPGR+  H+      N+  LK  V+DEAD +L + F ++I  IL   PK 
Sbjct: 128 LAKKPHIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKD 187

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    D V++ +A++      +    + +    ++  +  IL
Sbjct: 188 RNTFLFSATMTSKVAKLQRASLNDPVKIQVATKYSTVDTLQQEYIFIPYKHKECYLTYIL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F ST A+ ++   +L    F+ + ++G++ Q +R ++L   +     + +
Sbjct: 248 NELAGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P ++LVI+ ++  + +  +HR GRT RAGR G +V ++ Q       R+
Sbjct: 308 ATDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRI 367

Query: 360 FREANVSVVWEPA--PSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVD 405
                  +   P    SV    ER  +A R+  + +    +   EK+ +D
Sbjct: 368 EHALEQKLEEFPTEQESVLVFSERVNEAIRVATNEIKEAGLSEKEKRSMD 417


>gi|229085402|ref|ZP_04217643.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
 gi|228697878|gb|EEL50622.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-44]
          Length = 433

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 201/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   +     L E G    T +QE  +   +  KD++  A+TG+GKT+AF L +
Sbjct: 1   MKNFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  E+          AL +APTRELA+Q+  E+E +      +  +   GG  V ++
Sbjct: 61  LEKIDPESSDV------QALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   HIVV TPGRL DH+R + + +S++  +VLDEAD+ML  GF  DIE IL+ +P
Sbjct: 115 MRKLKGNTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSAT+   I  LAK Y K+   + I SE    ++I  R +      + +A+ +
Sbjct: 175 ESKQTMLFSATMPKDIKKLAKRYMKEPEMIRIQSEEVTVNNIKQRVIETTDRAKQDALRH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+   S+    L  + +    L G+LSQ +R   ++  R+ + + 
Sbjct: 235 VMDRDQPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    +   +
Sbjct: 295 LIATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMHLK 354

Query: 358 RLFREANVSVVWEPA 372
            + +    ++  +  
Sbjct: 355 EIEKGIGTTLQRQEL 369


>gi|239615016|gb|EEQ92003.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ER-3]
 gi|327357154|gb|EGE86011.1| ATP-dependent RNA helicase DBP2 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 548

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 190/377 (50%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 129 VETFDEAGFPQYVMSEVKAQGFAKPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 189 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 247

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 248 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 307

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA+++  D ++VNI S +   +  I     +V+  ++ + +  
Sbjct: 308 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 367

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            L     +N     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 368 HLDRIMEENKNAKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 427

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-- 351
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  
Sbjct: 428 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 487

Query: 352 -MQRRAERLFREANVSV 367
              R    +  E+   +
Sbjct: 488 KQARDLVSILTESKQQI 504


>gi|195439780|ref|XP_002067737.1| GK12550 [Drosophila willistoni]
 gi|194163822|gb|EDW78723.1| GK12550 [Drosophila willistoni]
          Length = 800

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 136 FEEGGFPDYVMNEVRKQGFAKPTAIQAQGWPIALSGRDLVGVAQTGSGKTLAYILPAVVH 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +      + T V      GG    ++ RDL
Sbjct: 196 INNQ-PRLERGDGPIALVLAPTRELAQQIQQVASEFGSNTQVRNTCIFGGAPKGQQARDL 254

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     ++     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 255 ERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQ 314

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRD---NAIVN 237
           +LM+SAT    +  LA+ +  + ++VNI S +   + +I     +   S++      ++ 
Sbjct: 315 VLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNIRQIVDVCDESEKIVKLINLLT 374

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+GR  +
Sbjct: 375 DISAESETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSI 434

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 435 LVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 494

Query: 358 RL---FREANVSVVWE 370
            L    REAN ++  +
Sbjct: 495 DLIQVLREANQTINPK 510


>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 473

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 185/372 (49%), Gaps = 3/372 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL E  Y+  T +Q   +   L  +DV+  AQTG+GKT +F L +
Sbjct: 7   LTSFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + + +     L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 67  LHRLLQNRIKPT-SKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++G  L ++ ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 126 RSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIVAKLPI 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA+   +D  RV +   +     I+ R + +  S +   +  +
Sbjct: 186 KRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPAVLAQL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  K LA       A+ G  SQ  R   L   R G  R  
Sbjct: 246 LKDEKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTGELRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + +L + PE  +HR GRT RAG  G ++ +           
Sbjct: 306 VATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEMAYLRD 365

Query: 359 LFREANVSVVWE 370
           + +   VS+  E
Sbjct: 366 IEKLIKVSLPKE 377


>gi|295662382|ref|XP_002791745.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
 gi|226279871|gb|EEH35437.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb01]
          Length = 547

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 189/385 (49%), Gaps = 7/385 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 128 VETFDEAGFPQYVMTEVKAQGFARPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 187

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 188 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 247 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA+++  D ++VNI S     N + + I          +R   
Sbjct: 307 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAK 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 367 HLERIMDDKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 426

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  +
Sbjct: 427 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAK 486

Query: 355 RAERLFREANVSVVWEPAPSVEAIR 379
           +A  L    N S         E +R
Sbjct: 487 QARDLVAILNESKQQIDPRLAEMVR 511


>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
 gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
          Length = 435

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 196/372 (52%), Gaps = 3/372 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+   + I  A+ E GY   T +Q   +   L +KDVL +AQTG+GKT  F L L  
Sbjct: 2   SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N +    +   AL + PTRELA QV + +E          AV  GGV ++ ++  
Sbjct: 62  RLKDSNFK-DKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKAL 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D I    L++S ++ +VLDEAD MLD+GF +DI+ IL   PK+R
Sbjct: 121 LKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA    K  V V ++  N     ++     V    +   +++++ 
Sbjct: 181 QNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   ++ ++ L +      A+ G  SQ  R+ AL   ++G+ RV +A
Sbjct: 241 KNSWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG  G+++ ++  +       + 
Sbjct: 301 TDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLFGIE 360

Query: 361 REANVSVVWEPA 372
           +     +     
Sbjct: 361 KLIKQKIKKVEI 372


>gi|39995599|ref|NP_951550.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982362|gb|AAR33823.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|298504618|gb|ADI83341.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 450

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 191/380 (50%), Gaps = 5/380 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I +A++  GY   T VQ A +   L   D+L +AQTG+GKT AF L    
Sbjct: 2   TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +    P   P  L + PTRELA QV   +    A   V     +GG+  H + R 
Sbjct: 62  RL--SSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L      +V TPGRL D +  + L++S L+ +VLDEAD MLD+GF DD++ I  +SP  R
Sbjct: 120 LSAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + L+F+AT+  A+  LA    ++  R++IA     H  I+ R  +      ++  + +++
Sbjct: 180 QTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+F +T+         L        AL G++ Q  R+  +  M+ GR R+ +
Sbjct: 240 TDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAG  G+++     N      R+
Sbjct: 300 ATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLARI 359

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R    ++     P +E  R
Sbjct: 360 ERYIGQTLPEHHIPGLEPSR 379


>gi|242007840|ref|XP_002424727.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
 gi|212508220|gb|EEB11989.1| eukaryotic initiation factor 4A-II, putative [Pediculus humanus
           corporis]
          Length = 449

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 200/381 (52%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + +   +   G+   +++Q+  + P ++  DV   AQ+G+GKT  F +++
Sbjct: 75  VDNFDDMGLKEELLRGIYAYGFEKPSAIQQRAIMPCIKGHDVTAQAQSGTGKTATFSISI 134

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +  +   AL +APTRELA Q+ + +  L      +   CIGG +V  + 
Sbjct: 135 LQQID------TSINECQALILAPTRELAQQIQKVVIALGDFMNAMCHACIGGTNVREDM 188

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+VVGTPGR+ D I  + L    +K  VLDEADEML  GF+D I  +  +   
Sbjct: 189 RKLEHGVHVVVGTPGRVYDMINRRCLRTDRIKIFVLDEADEMLSRGFKDQIHDVFQTLDV 248

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  ++K + ++ + + +  +      I    + +     +   + +
Sbjct: 249 DVQVILLSATMPHDVLEVSKKFMRNPINILVQKDELTLEGIKQFYISVEREEWKFETLCD 308

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T  + +  F V A+ G++ Q+ER   ++  R G +RV
Sbjct: 309 LYETLTITQAVIFCNTRRKVDMLTDFMHKKDFTVSAMHGDMEQREREFIMRQFRSGSSRV 368

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + +  +R   
Sbjct: 369 LITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDKRTLN 428

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  N  ++  P    + I
Sbjct: 429 DIEQFFNTHIIEMPMNVADLI 449


>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
 gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
          Length = 515

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 131/475 (27%), Positives = 218/475 (45%), Gaps = 22/475 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY   T +Q   +   L+ +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P +L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  LSLLSRGRAR---ARMPRSLVLCPTRELAAQVAENFDTYSKHLKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +  +  RV +A +      I+   V+   + R+N     
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKPTRRENADSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V   +K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RRLLRALIDREGEACSNAIIFCNRKVDVDVVSKSLIKYGYDAAPIHGDLEQSQRTRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G  R  IA+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRAGTLRFLIASDVAARGLDVPAVSHVFNFDVPSHAEDYVHRIGRTGRAGRAGKALMICN 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP-------SVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              ++    +       +    +P       +     +   +R ++ P    +      K
Sbjct: 358 PRDEKNLAGVEALLQKEIPRVESPITLGAPTTNAEPPQGSDERPVK-PRRSRTASRSRGK 416

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +  L   +P +  A  + +         E +     S  +R ++         
Sbjct: 417 SDNAPLPVQNPTEPVAEVMAVKPEQRTTSSERSAPRQESQPERSQERQSERPQER 471


>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 500

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 188/383 (49%), Gaps = 2/383 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ E+GY   T +Q   +   L+  D+L  AQTG+GKT  F L +   L A  
Sbjct: 8   LAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQRLSASK 67

Query: 67  DRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    A  AL + PTRELA QV   +        +   V  GGV +  +   L+ G
Sbjct: 68  PVRDSRGRIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQIDRLRKG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH     L++S ++ +VLDEAD MLD+GF  DI+ +L   P+K++ L+
Sbjct: 128 VDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLPQKKQSLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA         + +A  N     I  +   V    +   + +++R    
Sbjct: 188 FSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKELLAHLIRQGDW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF   +   +R  + L E     +A+ G  SQ  R+ AL   + G  +V +ATD+A
Sbjct: 248 HQVLVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  + +     + R   
Sbjct: 308 ARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEIFLRDIQRLIK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387
             +  +  P  E      A+ I+
Sbjct: 368 REIPVQVIPGFEPPAGERAEPIV 390


>gi|222086115|ref|YP_002544647.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221723563|gb|ACM26719.1| ATP dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 506

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 139/493 (28%), Positives = 224/493 (45%), Gaps = 18/493 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q +  A+++ GY   T +Q   +   L+ +D+   AQTG+GKT +F L +
Sbjct: 1   MTTFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPFALQRRDICGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    E       + +A+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNIALLIGGVSFEEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++  V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLICTPGRLLDHFERGKLLMSAVEIFVIDEADRMLDMGFIPDIERIAKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+   I  LA  + ++  RV +++       +  R           R    
Sbjct: 178 TRQTLFFSATMPAEIQKLADRFLQNPERVEVSAPASTAKTVTQRFVASHGKDYEKRAALR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG+ 
Sbjct: 238 DLIRAQTDLKNAIIFCNRKVDVADLFRSLQRHGFSVGALHGDMDQRSRTTMLQNFRDGQI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+DLPD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 298 QLLVASDVAARGLDLPDVGHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKH 357

Query: 356 AERLFREANVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            + + +     V W        P  E   + +     ++P      +    +       K
Sbjct: 358 IDAIEKLIGEDVQWLNGDLSALPPAEEGGDDNRSSRRREPKGKGRERDRSPRGRSASSHK 417

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV--GGGSRDNFKGSSW 468
            D +      + +  A     E +         ++  + SR         + DN +  + 
Sbjct: 418 SDIDVEDNVVVEVIEAAPAKAESVRNERKSENNNKSHNGSRNNNRPFPAANDDNRERRNR 477

Query: 469 FSLSVGSKQKAEA 481
           +            
Sbjct: 478 YRD---HDDGPTP 487


>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
 gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
          Length = 483

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 194/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   + + I  A+ E GY   T +Q  ++      +D+L  AQTG+GKT AF L L
Sbjct: 1   MKNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L  +  + +P +   AL +APTRELA Q+   +       G  VAV  GGV    + 
Sbjct: 61  LTRLAEDRKKPAPHT-CRALILAPTRELASQIAESVRTYGQFIGPSVAVIFGGVKPGPQL 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  IV+ TPGRL DH+   G+ +     VVLDEAD+MLDLGF   I  IL   PK
Sbjct: 120 RALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQMLDLGFAPAIRRILGKLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++ SAT+   I  LAK +  +   +++A  +R    ID     +  S +  A+++I
Sbjct: 180 VRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPVSRPIEKIDQSVRFLNSSSKRAALLDI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF  T+    R +  L +      A+ G  SQ+ R  +L   ++GR ++ 
Sbjct: 240 LSEDDIERAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRNREKSLDGFKNGRIKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ EL + PE  +HR GRT RAG+ G++V +     Q     
Sbjct: 300 VATDIAARGIDIDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRD 359

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 360 IERLIGRKIP 369


>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
 gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
           110]
          Length = 530

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 143/499 (28%), Positives = 222/499 (44%), Gaps = 24/499 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + I  ALSE  YV  T +Q   +   L  +DV+  AQTG+GKT +F L +
Sbjct: 15  LTSFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPI 74

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P +    L ++PTREL+ Q+            +   + IGGV + R+ 
Sbjct: 75  LHRLLEHRIKPQPKT-TRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQV 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL D ++  GL +  ++ +VLDEAD MLD+GF +DI  I+   P 
Sbjct: 134 RSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPI 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA +  +D  RV +   +     I+ R + V  S +   +  +
Sbjct: 194 KRQTLFFSATMPKDIAELADSMLRDPARVAVTPVSSTAERINQRILQVDFSAKPAFLTKL 253

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF  T+    +  K L +      A+ G  SQ  R   L   R G  R  
Sbjct: 254 LKDEPINRALVFTRTKHGADKVVKTLEKAGIAASAIHGNKSQNHRERTLAQFRSGDIRTL 313

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAE 357
           +ATD+AARGID+  +  VI+ +L + PE  +HR GRT RAG +G ++ ++          
Sbjct: 314 VATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELSYLR 373

Query: 358 RLFREANVSVVWE------------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + R   V++  E            P PS +  R+    R  Q P    +  G+      
Sbjct: 374 DIERLIKVALPREDLRTDAGRRDAGPPPSQQ--RQGRPGRPGQRP--QGARHGERHGDGR 429

Query: 406 VLLAKH-DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN-- 462
               +H D    +AG     R G     +   V    G           +  GG   +  
Sbjct: 430 RTDERHGDGRHHSAGKQGDGRPGEGRHGDARHVDGRPGSGPKASKGSRRRRSGGKMHSSQ 489

Query: 463 -FKGSSWFSLSVGSKQKAE 480
             +     + S G+    +
Sbjct: 490 TDRPEQRSAHSAGTPDGIQ 508


>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 432

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 190/368 (51%), Gaps = 4/368 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + +A+ E+GY   + +QE  +   L  KD+L SAQTG+GKT  F L +  
Sbjct: 2   TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    +        AL + PTRELA QV   +        +   V  GGV+   +   
Sbjct: 62  YLV--ETKHPKYRPLRALVLTPTRELAAQVHDNVREYSKYVDIKSTVVFGGVNAKPQIAT 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I+V TPGRL D    K L+   ++ ++LDEAD MLD+GF  DI  I+   P KR
Sbjct: 120 LRSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRMLDMGFVRDINKIISFMPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I  LA    +D V V  A +N     + ++   V  + +    + +++
Sbjct: 180 QNLMFSATFSNDIKKLASGILRDPVSVETAPQNSTAKKVTHKVYKVDKNKKTEFTIKLIK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   ++ T+ L +      A+ G  SQ  R+ AL+  +DG  ++ +A
Sbjct: 240 EGNWNQVLVFTRTKHGANKLTEKLIKADISAAAIHGNKSQGARTKALKNFKDGSIKILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P L  V++ EL + PE+ +HR GRTGRAG  G ++ ++          + 
Sbjct: 300 TDIAARGLDIPLLPHVVNFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEESEYQSEIE 359

Query: 361 REANVSVV 368
           +  N  + 
Sbjct: 360 KLLNEKLK 367


>gi|238879720|gb|EEQ43358.1| hypothetical protein CAWG_01593 [Candida albicans WO-1]
          Length = 562

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 179/379 (47%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + + ++G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 127 ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 186

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  +      P+ L +APTREL VQ+  E       + +      GG     + 
Sbjct: 187 IVHINAQ-PQLQYGDGPIVLVLAPTRELTVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 246 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 305

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  L ++Y  D ++V I S     +   + +       +  DR   
Sbjct: 306 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 365

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+
Sbjct: 366 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 425

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++    +   +
Sbjct: 426 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 485

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REAN +V  E
Sbjct: 486 LGGDLCKIMREANQTVPPE 504


>gi|301785417|ref|XP_002928121.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 729

 Score =  203 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 195/449 (43%), Gaps = 22/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 291 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 350

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 351 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 410

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 411 IRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 470

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 471 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 530

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 531 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 590

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 591 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 650

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V +  ++D    L++  F   + G        + A  D
Sbjct: 651 DNHL------------AQPLVKVLSDAQQDVPAWLEEIAFSTYVPGFSGSARGNVFASVD 698

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             K   G   ++ AG  + +   PV   S
Sbjct: 699 TRKNYQGKSTLNTAGFSSSQAPNPVDDES 727


>gi|163868666|ref|YP_001609875.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161018322|emb|CAK01880.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 129/410 (31%), Positives = 216/410 (52%), Gaps = 12/410 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AFGL + S +LA  
Sbjct: 25  LPTLLIKNLCIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFGLPILSQILALG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+   +  +     +   +  GGVS  ++ + +  G  
Sbjct: 85  DKRCPKTA-RALILAPTRELAVQIDEAIRTMAKGAHLSTCLVFGGVSRLKQIKRMAAGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R K +++S  + ++LDEAD MLD+GF  D++ I     ++R+  +FS
Sbjct: 144 VLIATPGRLRDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTALFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK    D V++ +A +     +I  +   V  S++ N +  +L      +
Sbjct: 204 ATMPKEIAALAKCLLNDPVKIEVAPQGTTALEITQKLYCVPTSEKKNVLSKLLTNPAFDS 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T  LA++ + V  + G  SQ  R +AL+  R+   ++ +ATD+AAR
Sbjct: 264 VIVFTRTKHGADAVTLHLAKNGYLVATIHGNKSQGARQSALKAFRERSVKILVATDIAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-RAERLFREANV 365
           GID+P +  VI+ +L    E+ +HR GRTGR G  G ++ +  + ++R R   + R   +
Sbjct: 324 GIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERTRLRAVERLIRM 383

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +V +  P          ++    P  L+++Q  EK+       K    +
Sbjct: 384 KLVSDSVP----------EQFAAFPEKLNALQSGEKENNKERRLKKSKRQ 423


>gi|115474897|ref|NP_001061045.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|75328149|sp|Q84UQ1|RH42_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|29467560|dbj|BAC66730.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|37806159|dbj|BAC99664.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113623014|dbj|BAF22959.1| Os08g0159900 [Oryza sativa Japonica Group]
 gi|218200507|gb|EEC82934.1| hypothetical protein OsI_27901 [Oryza sativa Indica Group]
 gi|222639953|gb|EEE68085.1| hypothetical protein OsJ_26125 [Oryza sativa Japonica Group]
          Length = 1049

 Score =  203 bits (515), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 122/454 (26%), Positives = 212/454 (46%), Gaps = 13/454 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K +    +   + + + + G+    S+Q   L   +  +D +  A+TGSGKT+AF L +
Sbjct: 423 IKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPM 482

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +     P   P+ L +APTREL VQ+  +++      G+      GG  V ++ 
Sbjct: 483 L-RHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQI 541

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +L+ GA IVV TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +
Sbjct: 542 SELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQN 601

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +   R+ ++FSAT    +  LA+      V + +   +  + DI     +   ++R   +
Sbjct: 602 TRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFFRL 661

Query: 236 VNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +L     K  I VF  ++       K L +H +  ++L G   Q +R + L   +   
Sbjct: 662 LELLGEWFDKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTLADFKSNV 721

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IAT VAARG+D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R
Sbjct: 722 CSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEER 781

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            A  L +   +S    P   ++ + +R   ++ Q      + Q             ++ E
Sbjct: 782 YAPDLVKALELSEQAVP-EDLKGLADRFMAKVKQ-----GTEQAHGTGYGGSGFKFNEEE 835

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
             A    +  +A     EE    S        R 
Sbjct: 836 DEARKSAKKAQAREYGYEEDKSDSDSDEEGGVRK 869


>gi|323699639|ref|ZP_08111551.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 369

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 185/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F  + + I   + + GY   T +QE  +   L+  DV+  AQTG+GKT AF L +  
Sbjct: 3   FSTFS-LDRRILAGVRDCGYETPTPIQEQAIPLVLKGHDVMGLAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL  N   S  + P  L +APTRELA+Q+      L   TG+     IGGV ++ + + 
Sbjct: 62  RLLTGNK--SGRALPSVLVLAPTRELALQIDENFNQLGRHTGIRCGAVIGGVGMNPQIKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   ++V  PGRL   +    ++++H+  +VLDEAD MLD+GF  DI+ IL   P +R
Sbjct: 120 F-SHCRVIVACPGRLVRLLNNGSVSLTHIDTLVLDEADRMLDMGFMPDIKRILAKLPARR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+N   +  +    +  +    +++       + +   +  +L 
Sbjct: 179 QNLLFSATMPQDIRKLAENI-LNDPKTVQVANTQPVESVEHSFYATENNRKSELLTKLLD 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T+       + LA   +    L G +SQ +R  AL   RDG   + +A
Sbjct: 238 RAEHQSVLVFTKTKHKAKNLARKLAGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIMVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID   +  VI+ ++    E   HR GRTGRAGR G +V ++    + +   + 
Sbjct: 298 TDIAARGIDCERISHVINFDMPDTVETYTHRIGRTGRAGRSGHAVSLVTGEDKTQVRDIE 357

Query: 361 REANVSVVWEPA 372
           R   V +  +  
Sbjct: 358 RVMRVKLTRQTL 369


>gi|325198557|gb|ADY94013.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           G2136]
          Length = 457

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 143/441 (32%), Positives = 228/441 (51%), Gaps = 7/441 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD-PEKIA----AGFLR 422
           + E     E           + P   +  Q +  +       K+  PE  A    A   +
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKPEMREPRQRNRYESAKAQREKNTRPETTANDAGAACGK 432

Query: 423 IHRAGLCAPEEITPVSLVSGR 443
           I      +  E    +L+  R
Sbjct: 433 IAGRSRRSRREHRTCALLQPR 453


>gi|242371572|ref|ZP_04817146.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242350724|gb|EES42325.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 525

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 227/475 (47%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +       + L   G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L
Sbjct: 17  LQNFKELGISDKTVQTLESMGFKEPTPIQKDSIPYALKGDDILGQAQTGTGKTGAFGIPL 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 77  IEKVVGQE-------GVQSLILAPTRELAMQVAEQLREFSKGQRVQVVTVFGGMPIDRQI 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 130 KALKRGPQIVVGTPGRVIDHLNRRTLKTHDIHTLILDEADEMMNMGFIDDMRFIMDKIPA 189

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  M FSAT+  AI  L + + K    +   +       I+    +V   ++ +   N
Sbjct: 190 DQRQTMLFSATMPKAIQELVQQFMKTPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTN 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 250 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 310 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 369

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++       +     P  + +   RE D +  +Q+ +  D+ +   +++   LL  +D  
Sbjct: 370 QIEDVNGRRMNALRPPHRKEVLKAREDDIKEKVQNWMSKDN-EARLQRIASELLEDYDSV 428

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ + R                 F   + 
Sbjct: 429 ELVASLLQELVEANDEVEVQLTFEKPLARKGRNNKGGSRRGNNKRGNGKFDNKNR 483


>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
 gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
          Length = 483

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 193/377 (51%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L   +
Sbjct: 8   LAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNAFQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  PANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKREMLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  + +     + R    
Sbjct: 308 RGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPLLRDIERLIKR 367

Query: 366 SVV------WEPAPSVE 376
            +       +EP P+ +
Sbjct: 368 EIPQQVIAGFEPDPNAK 384


>gi|297582584|ref|YP_003698364.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141041|gb|ADH97798.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 483

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 122/395 (30%), Positives = 213/395 (53%), Gaps = 8/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL+E      T VQ+ ++   +  KDVLV++QTG+GKT ++ + +  T+  E 
Sbjct: 11  LSDEIVRALNELNMTMPTDVQKQVIPLAMENKDVLVTSQTGTGKTASYAIPICDTVDWEE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R      P AL ++PTRELAVQ+  ++  +     +      G   V++++ +L+   H
Sbjct: 71  NR------PQALILSPTRELAVQIQEDITNIGRFRRIKATALYGQEPVNKQKLELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DHI+   L ++ ++ +V+DEAD+MLD+GF D +E IL S PK+R   +FS
Sbjct: 125 VVVGTPGRVLDHIKKGTLMLNRIEHLVIDEADQMLDMGFIDQVEAILASLPKERTTSLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +     ++ I  E      ID   + V   ++   + ++       +
Sbjct: 185 ATMRNEIRALAGRHMNAPDQIAIKQETVAADTIDQSVIHVTNKEKLQLLQDVTVVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+T+ SV      L +  ++   + G L Q+ER + ++  + G  R  IAT+VAAR
Sbjct: 245 CLIFCNTQESVDLLETSLNKEGYRARKIHGGLPQKERFSVMEAFKRGSFRYLIATNVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LVI+ ++    E+ +HR+GRTGRAG+ G ++  +    +     L R   + 
Sbjct: 305 GIDIDSVSLVINYDVPFEKESYVHRTGRTGRAGKAGKAITFVNNREKSAIRELERYTGII 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           +    APS + +  + A+    + L    ++ ++K
Sbjct: 365 IPLAKAPSPDEV--KRARNTFYEKLNTAPVRKEKK 397


>gi|91228785|ref|ZP_01262694.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91187660|gb|EAS73983.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 430

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 121/427 (28%), Positives = 209/427 (48%), Gaps = 4/427 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N   S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG
Sbjct: 66  SNRSASRKTA-RALILAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQVTALENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    ++++HL+ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVAHLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANEVVKELKLDGIKAVVCHGDRAQSARRRALEEFKSGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + ++ +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLHSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAGLCA 430
            +A   A
Sbjct: 423 LKARRGA 429


>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 479

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 186/372 (50%), Gaps = 3/372 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + + L+++G+   T +Q   +   L  +D++  AQTG+GKT AF L +
Sbjct: 1   MTDFRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+      +P      L ++PTRELA Q+      L     + VAV  GGVS   + 
Sbjct: 61  LHALITH-PTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHALSVAVVFGGVSPGAQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  I+V TPGRL DHI     ++   +  VLDE D+MLDLGF   I  I+ + P 
Sbjct: 120 KALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQMLDLGFVKPIRRIVGTLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA +  KD V V++    +    +  + V V    + + ++ +
Sbjct: 180 KRQSLFFSATMPGEIRKLATDLLKDPVTVSVTPVAKTADRVRQQVVFVETHRKRDILIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF  T+    + T+ L +      A+ G  SQ +R  +L   R G  R  
Sbjct: 240 FGDAMMTRTIVFTRTKRGADKVTQHLEKAGIPAFAIHGNKSQSQRERSLLAFRSGHVRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ EL   PE+ +HR GRT RAG +G+++ +     +     
Sbjct: 300 VATDIAARGIDIDGVTHVVNYELPEVPESYVHRIGRTARAGAEGIAISLCDGTERDYLRN 359

Query: 359 LFREANVSVVWE 370
           + +   +++  E
Sbjct: 360 IEKLTRLNLPVE 371


>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
 gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
          Length = 488

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 191/374 (51%), Gaps = 4/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLHAFY 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S   A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AENRSARRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRMLDMGFIHDIKRVLAKLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I +LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKSLADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   +    +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALSEFKSSTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRS---GRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           RGID+  L  V++ +L + PE+ +HR    GRTGRAG  G +V ++  + ++    + R 
Sbjct: 308 RGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRTGRAGANGEAVSLVCVDEKQLLRDIERL 367

Query: 363 ANVSVVWEPAPSVE 376
               +  +  P  E
Sbjct: 368 IKREIPQQVIPGFE 381


>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
          Length = 403

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY   ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 30  TFESMSLKENLLRGIYAYGYETPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA Q+   ++ L     V    CIGG +V  + R 
Sbjct: 90  VIN------TASRETQALVLSPTRELATQIQSVVKALGDYMNVQCHACIGGTNVGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 144 LDQGQHIVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNQGFREQIYEVYRYLPPAT 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 204 QVVVVSATLPQDVLEMTYKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R    RV I
Sbjct: 264 DTLTITQAVIFCNTRRKVDWLTDKMRESNFTVSSMHGDMPQKERDSIMQDFRQFNTRVLI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 324 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 383

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 384 ELYYSTQIDEMPM 396


>gi|143454263|sp|Q5N7W4|RH30_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 30
          Length = 666

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 190/380 (50%), Gaps = 10/380 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L     + A+
Sbjct: 257 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQ 316

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+ +E     + +        GG     + RDL+ G 
Sbjct: 317 -PRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGV 375

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D + G   N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 376 EIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYW 435

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYHG 243
           SAT    + +LA+ + ++  +V I S + + +    + + V         ++        
Sbjct: 436 SATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMD 495

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATDV
Sbjct: 496 GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDV 555

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           AARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +            R   ++ 
Sbjct: 556 AARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKIL 615

Query: 361 REANVSVVWEPAPSVEAIRE 380
           REA   V     P++E++ +
Sbjct: 616 REAGQVVN----PALESMAK 631


>gi|32267267|ref|NP_861299.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
 gi|32263320|gb|AAP78365.1| ATP-dependent RNA helicase DeaD [Helicobacter hepaticus ATCC 51449]
          Length = 530

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 224/477 (46%), Gaps = 13/477 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + E G+   + VQ   +   L+ KD++  AQTG+GKT AF + + +TL    
Sbjct: 52  LKDFVLKGIREAGFSTPSPVQSQSIPIILQGKDLIAQAQTGTGKTAAFAIPILNTLNRNK 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D         AL I PTRELA+Q+  E+  L     +      GG S+ R+   L+    
Sbjct: 112 D-------IEALIITPTRELAMQISEEILKLGRFGRIKTICMYGGQSIKRQCDLLEKKPK 164

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            ++ TPGRL DH++   +     + VVLDE+DEMLD+GF DDIE I    P  R+ L+FS
Sbjct: 165 AMIATPGRLLDHLQNGRIAHFSPQIVVLDESDEMLDMGFLDDIEEIFKFLPNTRQTLLFS 224

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     +   V I   +  + DI+ +  ++   +RD AIV ++       
Sbjct: 225 ATMPEPIKALAMKILNEPAFVKITPTDVTNQDIEQQYYIINEGERDEAIVRLIETQNPTK 284

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+F   +         LA   F+ +AL G++ Q++R  A++  R+ +  + +ATDVA+R
Sbjct: 285 SIIFTRMKKEADALAIRLANRGFKAIALHGDMEQRDRREAIKAFRENKIEILVATDVASR 344

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  V +  +  NPE+ +HR GRTGRAG+KG++V +      +   ++ +     
Sbjct: 345 GLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAVTLATPLEYKDLSKIKQITKAK 404

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +          I++  +       L    I      + + L  K D  ++    + +H  
Sbjct: 405 LKLC------EIKQEYSDDAFSQELSHTKISDKSVAIYEKLKDKIDTTQLCLKLISLHLE 458

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
              + +       ++  +   +  +  K       N + ++  +L  G   K   R+
Sbjct: 459 KNSSLKIGLSKEQIAKLEENYESEQPKKSNKKFVGNTRSATKGNLRGGKGSKNNKRY 515


>gi|149199772|ref|ZP_01876803.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149137177|gb|EDM25599.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 437

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 131/394 (33%), Positives = 206/394 (52%), Gaps = 9/394 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     I   +  +GY   T +QE  +   L+  D+L  AQTG+GKT AF L +  
Sbjct: 2   SFENLGLRTEILTGIKFQGYTQPTPIQEQAIPIILKGGDILAGAQTGTGKTAAFTLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++R      P AL + PTRELA QVG  +E       +   V  GGV ++ +++ 
Sbjct: 62  LLSTADNRG--GHRPRALVLTPTRELAAQVGESVELYGKGLDIRSTVIFGGVGINPQKQK 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGRL D    K L++S ++ ++LDEAD MLD+GF  DI+ I+   P+KR
Sbjct: 120 LRKGVDIVVGTPGRLLDLAGQKALDLSRIEYLILDEADRMLDMGFIHDIKKIIKLVPEKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT S  I  L+++  ++   V +A +N     +D     V  + + N + +++R
Sbjct: 180 QTLFFSATYSKDIKALSESILRNPSLVEVARQNTSAETVDQSVYHVGKNKKRNLLSSLIR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   ++ T +L        A+ G  SQ  R+ AL   +  + RV +A
Sbjct: 240 DGEWNQVLVFTRTKHGANKLTNMLIADGITAAAIHGNKSQNARTRALADFKAIKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL    E+ +HR GRTGRAG  G ++ ++ +        + 
Sbjct: 300 TDIAARGIDIDRLPHVVNYELPEIAEDYVHRIGRTGRAGCSGEAISLVAKEEASLLFAIE 359

Query: 361 REANVSVVWEPAPSVEA-----IRERDAQRILQD 389
           +  N  V  +  P +        + R+A++ L+ 
Sbjct: 360 KLINKKVNVKEIPGITEKAPSQSQAREAEKELKK 393


>gi|91206539|sp|Q59LU0|DBP2_CANAL RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 562

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + + ++G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 126 ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 185

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  +      P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 186 IVHINAQ-PQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQI 244

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 304

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  L ++Y  D ++V I S     +   + +       +  DR   
Sbjct: 305 DRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 364

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+
Sbjct: 365 HLESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGK 424

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++    +   +
Sbjct: 425 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSK 484

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REAN +V  E
Sbjct: 485 LGGDLCKIMREANQTVPPE 503


>gi|56708046|ref|YP_169942.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670517|ref|YP_667074.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457133|ref|ZP_03665606.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370532|ref|ZP_04986537.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874848|ref|ZP_05247558.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|54113663|gb|AAV29465.1| NT02FT0547 [synthetic construct]
 gi|56604538|emb|CAG45585.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320850|emb|CAL08968.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568775|gb|EDN34429.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840847|gb|EET19283.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159241|gb|ADA78632.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 441

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 196/378 (51%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY   T +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKPTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGVEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKYNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGR+G++G+++ ++  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRSGQEGLAISLVSADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 438

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/454 (29%), Positives = 205/454 (45%), Gaps = 19/454 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  A++ +GY   T +Q   +       D+L  AQTG+GKT AF L +  
Sbjct: 2   SFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  EN        P AL + PTRELA QV  ++     +  +   +  GGV++  +   
Sbjct: 62  RL-GENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL DH     +N+S +K +VLDEAD MLDLGF DDI  + +  P KR
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRMLDLGFIDDIHKVAEYLPAKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT S +I  LA        R+ +A  N     +      V  S +   +  ++ 
Sbjct: 181 QTMLFSATYSQSIKQLADELLDQPRRIEVARRNIAADAVTQAVYQVEKSRKREMLSFLIS 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  TR    + T+ L     +  A+    SQ  R+  L   + G  RV +A
Sbjct: 241 KGNWNQVLVFARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRTRTLAEFKRGEFRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  V++ +L   PE+ +HR GRTGRAG  G+++ ++    Q   + + 
Sbjct: 301 TDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGENGVALSLVSHEEQSLLQAIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    ++   P  ++    +   +R+            + K        +   EK A   
Sbjct: 361 KLLKYAI---PLQTLAEFPQYAVRRV--------DKSKEIKPGNGPSKTRKRVEKSAKA- 408

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
                A    P+    V+        R   R+ +
Sbjct: 409 ----PAKTTTPQRKKVVAERPAPKTGRRGRRSMR 438


>gi|15601523|ref|NP_233154.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|147671636|ref|YP_001215545.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           V52]
 gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
           8457]
 gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           B33]
 gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
           O395]
 gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
          Length = 422

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 186/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G  N T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
 gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           gladioli BSR3]
          Length = 505

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 190/371 (51%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L A  
Sbjct: 8   LAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQRLNAST 67

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +     A  AL + PTRELA QV   +        +   V  GGVS++ +   L+ G 
Sbjct: 68  AAQAGGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDALKRGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ K +++S L  +VLDEAD MLD+GF  DI+ +L   P KR+ L+F
Sbjct: 128 DIVVATPGRLLDHMQQKTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPAKRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I  LA +       + +A  N     I  +   V    +   + +++R H   
Sbjct: 188 SATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHLIREHNWF 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +ATD+AA
Sbjct: 248 QVLVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  + ++    + +    
Sbjct: 308 RGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRDIEKLIKR 367

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 368 EIPQEVIAGFE 378


>gi|238750395|ref|ZP_04611896.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
 gi|238711326|gb|EEQ03543.1| ATP-dependent RNA helicase srmB [Yersinia rohdei ATCC 43380]
          Length = 438

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/418 (29%), Positives = 203/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q + + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             D      A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILDEPVELEADPSRRERKKIQQWYYRADNIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +    +   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKEPSAKSTGKPSKKVLAKRKELKEASKEKAKVKVRHRDAKNV 425


>gi|116252340|ref|YP_768178.1| cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256988|emb|CAK08082.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 521

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 204/397 (51%), Gaps = 18/397 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 7   LTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 67  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 124 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF 183

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+   I  LA  + ++  R+ +A      + +  R           R    
Sbjct: 184 TRQTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAATVTQRFVASHGKDYEKRAVLR 243

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 244 ELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNL 303

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 304 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 363

Query: 356 AERLFREANVSVVW-------EPAPSVEAIRERDAQR 385
            + + +     V W        P P+ +    RD++R
Sbjct: 364 VDAIEKLIGQKVEWLSGDLTSLPPPAED---SRDSER 397


>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 431

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 202/383 (52%), Gaps = 9/383 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A++++GY   T VQ   +   L  +D+L  AQTG+GKT  F L L  
Sbjct: 2   TFTDLQLNDSLLKAINDQGYTTPTPVQAQAIPFILEGRDMLAGAQTGTGKTAGFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L++  +        AL + PTRELA QVG  ++       +  AV  GGV ++ +   
Sbjct: 62  -ILSDRKQPKTHRKIRALILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITM 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  I++ TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI  ++   PK R
Sbjct: 121 LRNGVDILIATPGRLLDHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILPKVR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I TLA    ++   V +A  N     +    +LV    + + +  ++ 
Sbjct: 181 QNLLFSATYSDDIKTLANTLLRNPAEVEVARRNTSSELVKQSVILVDCKRKSSLLGELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  +VF  T+   ++ T+ L +      A+ G  SQ  R+ AL   +    RV +A
Sbjct: 241 KHKWEQVLVFTRTKHGANKLTEYLQKIGITAAAIHGNKSQSARTKALDDFKRSSVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG +G ++ ++  +       + 
Sbjct: 301 TDIAARGIDIDALPHVVNFELPNIAEDYVHRIGRTGRAGCEGEALSLVCVDEADYLRGIE 360

Query: 361 REANVSVV------WEPAPSVEA 377
           +  N  +       +EP PS++A
Sbjct: 361 KLINKKLDARIIEGYEPDPSIKA 383


>gi|242051719|ref|XP_002455005.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
 gi|241926980|gb|EES00125.1| hypothetical protein SORBIDRAFT_03g002860 [Sorghum bicolor]
          Length = 488

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E     A + +      GGV    + RDLQ G  
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVE 216

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 217 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 276

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN-ILRYHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN +      
Sbjct: 277 ATWPKEVEQLARNFLFDPYKVTIGSEELKANHAIVQHVEILSESQKYNKLVNLLEDIMDG 336

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 337 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 396

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+    ++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 397 ARGL----VKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAKELISILE 452

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 453 EAGQKVSSE 461


>gi|110833595|ref|YP_692454.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 459

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 190/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++ERGY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLERL--RT 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +  +   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G  
Sbjct: 66  GSPARNNQVRALVLTPTRELAAQVAESVATYGKNLPLTSTVVFGGVKINPQMQRLRGGCD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +   HL+ ++LDEAD MLD+GF  DI  IL   P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLYQQNAVKFDHLEVLILDEADRMLDMGFIHDIRKILAKLPPKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V V+I+  N     +      V    +   + ++++ +G   
Sbjct: 186 ATFSSEIRALAKGLVNDPVEVDISPRNTTTELVTQWIAPVDKKRKPALLTHLIQENGWFQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L  +  +  A+ G  SQ  R+ AL   + G+ R  +ATD+AAR
Sbjct: 246 VLVFSRTKHGANKLAKQLEANGIEAAAIHGNKSQNARTRALADFKSGKVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G ++ ++  +  ++ + + R     
Sbjct: 306 GLDIEQLPQVVNVDLPNVPEDYVHRIGRTGRAGATGQAISLVSADEFQQLKDIERLTQQQ 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 LERKIVAGFE 375


>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 438

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 204/373 (54%), Gaps = 8/373 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  NI + I +A++E+GY+  T +QE  +   L+ +D+L  AQTG+GKT AF +  
Sbjct: 1   MK-FQTLNITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPT 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R+       +L + PTRELA+Q+   +      TG+  AV  GGV    + 
Sbjct: 60  IQLLNRHEKRY-----IRSLIVTPTRELAIQIQENICAYAKHTGIRSAVIFGGVPQKPQE 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  I+V TPGRL D I+   ++I  ++  +LDEAD MLD+GF  D++ ++   PK
Sbjct: 115 RILKAGVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRMLDMGFLPDVKRLIAKLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L FSAT+   I  LA++  K+ + + +         ID     V  +++   ++ +
Sbjct: 175 KKQTLFFSATMPKEIRALAESLLKNPISIEVTPAATTVEKIDQTLYYVDKANKKRLLLKL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  +NA+VF  T+++ +R  K L E       + G  SQ  R  AL   ++G++RV 
Sbjct: 235 LNKNRVQNALVFTRTKSNANRLAKYLNEAGVAAGVIHGNKSQNARQQALLQFKEGKSRVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V + ++ +  E  +HR GRTGRAGR+G ++     N     + 
Sbjct: 295 VATDIAARGIDVQELSHVFNYDIPNEAEVYVHRIGRTGRAGRQGTAIAFSDINEAEYIKS 354

Query: 359 LFREANVSVVWEP 371
           + +   + +  + 
Sbjct: 355 IEKLIRMRIPVQE 367


>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
 gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
          Length = 423

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 190/363 (52%), Gaps = 2/363 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q +  AL E GY   T +QE  +   L  KD+L  AQTG+GKT AF L +   ++ E
Sbjct: 7   ELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPILQNIMEE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +     A  AL +APTRELA+Q+G   +       + + V  GGVS + +   L+ G 
Sbjct: 67  --KTVGKGAIKALILAPTRELAIQIGESFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D IR   + ++ ++  VLDEAD MLD+G   D+  I+   PKKR+ + F
Sbjct: 125 DILIATPGRLLDLIRQGFVKLNQVEFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     + V+V +   +     I      VA +D+ N ++++L+    +
Sbjct: 185 SATMPTEIEKLAGTILSNPVKVVVNPVSSTVEVILQSVYRVAKTDKTNLLIHLLKNKQVE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VF  T+   ++  K L +  F   A+ G  SQ  R  AL+  +  +  V +ATD+AA
Sbjct: 245 RSLVFSRTKHGANKIVKKLLQAGFTAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P+L  VI  +L   PE  +HR GRTGRAG  G ++    +        + + +  
Sbjct: 305 RGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRDIEKLSKR 364

Query: 366 SVV 368
            V 
Sbjct: 365 KVP 367


>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 201/376 (53%), Gaps = 8/376 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  AL+E GY   T +Q A +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 2   TFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQ 61

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            LL + +   SPA  P+ AL + PTRELA QV   +      T +  AV  GGV ++ + 
Sbjct: 62  NLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKHTALRSAVVFGGVDMNPQT 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL DH++ + +N+S ++ +VLDEAD MLD+GF  D++ I++  P 
Sbjct: 122 EQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADRMLDMGFLPDLQRIINLLPA 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT SP I  LA +Y +    + +A  N    ++      V    +  A+V++
Sbjct: 182 HRQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTVPDGHKQAALVHL 241

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           LR           IVF +++   SR  + L        A+ G+ +Q ER   L+  + G 
Sbjct: 242 LRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQTERMQTLEAFKQGT 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGRAG  G ++ +     +R
Sbjct: 302 VDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASGDALSLFAPGDER 361

Query: 355 RAERLFREANVSVVWE 370
               + +    ++  E
Sbjct: 362 LLADIEKLIKRNLPRE 377


>gi|254563310|ref|YP_003070405.1| RNA helicase [Methylobacterium extorquens DM4]
 gi|254270588|emb|CAX26591.1| RNA helicase [Methylobacterium extorquens DM4]
          Length = 517

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 211/464 (45%), Gaps = 24/464 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+ P I  LA  +  +  RV +A      + I+ R V       +   V       A  
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASE 244

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAIESLI 364

Query: 364 NVSVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W      SV    E D  R  +        +G E+        +           
Sbjct: 365 GQPIAWLDGDLASVSDEVEGDEPRRRRGSRRAKEAKGGEETKSGGRSTERSA-------- 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                   AP   +P S    R   R  +   +     RD  + 
Sbjct: 417 --------APSSESPRSENRSRGGRRPAAERSRADAPRRDPVRE 452


>gi|269139672|ref|YP_003296373.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985333|gb|ACY85162.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559541|gb|ADM42205.1| ATP-dependent RNA helicase RhlE [Edwardsiella tarda FL6-60]
          Length = 440

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ E+GY + T +Q+  +   L+ +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LCAELLRAVEEQGYRDPTPIQQQAIPLVLQRRDLMASAQTGTGKTAGFTLPLLQLLHQNP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  KNGKGRRPVRALILTPTRELAAQIGENVREYSRHLPLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA +   +   V +A  N     +     LV    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAASLLHNPAEVEVARRNTASELVTQHVHLVDKKRKRELLSFLIGTRDWRQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDIERLLKRP 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP P+++A
Sbjct: 368 IPRMAIEGYEPDPTIKA 384


>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter sp.
           K31]
 gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
          Length = 678

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 146/499 (29%), Positives = 232/499 (46%), Gaps = 25/499 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +       +A+++ GY   T +Q A +   L  +DVL  AQTG+GKT AF L L
Sbjct: 1   MTEFSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    +   A  P AL IAPTRELA QV    E     T +  A+ IGGVS   + 
Sbjct: 61  IDKLMNGRAK---ARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAI 235
           K++ L FSAT+ P IT L K + KD VR+  +     + +I     +        +  A+
Sbjct: 178 KKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMVKVPSSDPKAKRLAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++     +  IVFC+ +  V    K L  H F   A+ G+L Q +R+  L   RDG  
Sbjct: 238 RALIEKAQIETGIVFCNRKTEVDVVAKSLKSHGFDAAAIHGDLDQSQRTKTLAAFRDGSL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G++  ++     + 
Sbjct: 298 KILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRSGVTYMLVTPADDKG 357

Query: 356 AERLFREANVSVVWEPAP-----SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +++ +    +   E        +V   RE D +   +D         +  +  D   A 
Sbjct: 358 FDKVVKLIGSTPTEEKLDLDYSGAVTIKREGDKRGGGRDRAPR-GGDRERGRDRDRNRAP 416

Query: 411 HDPEKIAAGFLRIHRAGLCA-PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            +P  +AA  L     G+ A P   T +S    +   R      +    +       +  
Sbjct: 417 TEPSDVAAANLEAAITGVPATPVASTVMSDPPAKRPARVRKPRGEKAAEAVVADAPEAEA 476

Query: 470 SL----------SVGSKQK 478
            +            G + +
Sbjct: 477 RVAIARPAAPAAETGRRDR 495


>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 802

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 194/375 (51%), Gaps = 3/375 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            + P  I + +   G+   T++Q       L+ +D++  A+TGSGKT+AF L     + A
Sbjct: 403 SHFPPYIMKEIVAAGFAAPTAIQAQSWPVALKGRDMIGLAETGSGKTLAFLLPGVVHINA 462

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +     P   P+ L +APTRELA+Q+  E +   + + +      GGV   ++   L++G
Sbjct: 463 Q-PFLEPNDGPIMLVLAPTRELAMQIQAECDKFGSSSKIKNCAVYGGVPKFQQTSQLRSG 521

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF D I  IL      R+ LM
Sbjct: 522 VEIVIATPGRLIDLLETRKTNLKRVTYLVLDEADRMLDMGFEDQIRKILSQIRPDRQTLM 581

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    + +LA ++ KD +++ I S     + ++     +   +D+   + + L   G
Sbjct: 582 FSATWPKVVQSLANDFLKDPIQIKIGSAELSANHNVKQIIEICEKNDKQQRLFSFLEKVG 641

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F  T+  V+   + +    F+   + G+ +Q ER  +LQ  +    ++ IATDV
Sbjct: 642 DEKCIIFMETKNGVNLLQRNMQVAGFKCAGIHGDKTQGERDYSLQQFKKSGIQMLIATDV 701

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  +   N  R A  L    
Sbjct: 702 ASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAFTLFTTNDMRLAGELITVL 761

Query: 364 NVSVVWEPAPSVEAI 378
            +       PS+E +
Sbjct: 762 -IEANQYVPPSLEQM 775


>gi|240140800|ref|YP_002965280.1| RNA helicase [Methylobacterium extorquens AM1]
 gi|240010777|gb|ACS42003.1| RNA helicase [Methylobacterium extorquens AM1]
          Length = 519

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 211/466 (45%), Gaps = 24/466 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+ P I  LA  +  +  RV +A      + I+ R V       +   V       A  
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASE 244

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAIESLI 364

Query: 364 NVSVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W      SV    E D  R  +        +G E+        +           
Sbjct: 365 GQPIAWLDGDLASVSDEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSA-------- 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                   AP   +P S    R   R  +   +     RD  +   
Sbjct: 417 --------APASESPRSENRSRGGRRPAAERSRADAPRRDPVREPE 454


>gi|163853383|ref|YP_001641426.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           extorquens PA1]
 gi|163664988|gb|ABY32355.1| DEAD/DEAH box helicase domain protein [Methylobacterium extorquens
           PA1]
          Length = 519

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 211/466 (45%), Gaps = 24/466 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLQAVTTAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+ P I  LA  +  +  RV +A      + I+ R V       +   V       A  
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPASTATTIEQRLVATGAEGHEKRKVLRHLIRSASE 244

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V++  + L  H F   AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LQNGIIFCNRKRDVAQLQRSLTSHGFNAAALHGDMDQRARMAALDGFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  ++ +R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGQAFTLASRSDERSLSAIESLI 364

Query: 364 NVSVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W      SV    E D  R  +        +G E+        +           
Sbjct: 365 GQPIAWLDGDLASVSDEVEGDEPRRRRGSRRAKETKGGEETKSGGRSTERSA-------- 416

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                   AP   +P S    R   R  +   +     RD  +   
Sbjct: 417 --------APASESPRSENRSRGGRRPAAERSRADAPRRDPVREPE 454


>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
 gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
          Length = 429

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 191/376 (50%), Gaps = 4/376 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++   + + EAL ++GY + + +Q   +   +  +DV+ +AQTG+GKT  F L +  
Sbjct: 20  LFSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLE 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + +      AL + PTRELA QV   +    +   +   V  GGV  + +   
Sbjct: 80  RLRH--GKPAGRGQIRALVLTPTRELAAQVLENVRAYSSHLPLRSDVVFGGVKANPQINR 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D  +   L+   L+ +VLDEAD MLD+GF  DI  ++   P KR
Sbjct: 138 LRGGVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPVKR 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     D V + +  EN+    ++       ++ + + + +++R
Sbjct: 198 QTLLFSATFSAPIRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIR 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +R    L++      A+ G  SQ  R+ ALQ  + G  RV +A
Sbjct: 258 AGDWRQVLVFSRTKHGANRVADRLSKEGLSAAAIHGNKSQGARTRALQGFKQGNIRVLVA 317

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++        + + 
Sbjct: 318 TDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIE 377

Query: 361 REANVSVVWEPAPSVE 376
           R     +  +     E
Sbjct: 378 RLTGEELTRQTVDGFE 393


>gi|223649022|gb|ACN11269.1| Probable ATP-dependent RNA helicase DDX5 [Salmo salar]
          Length = 614

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 183/378 (48%), Gaps = 9/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E + P  + + +++ G+   T +Q       L  KD++  AQTGSGKT+++ L   
Sbjct: 94  MKFHEASFPTYVMDVINKAGWSEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAI 153

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +        + +      GG     + R
Sbjct: 154 VHINHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLR 212

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL  G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 213 DLDRGVEICIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAI 235
           R+ LM+SAT    +  LA+++ KD V++N      S N     I          D+   +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRL 332

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 333 LEEIMSEKENKTIIFTETKRRCDEITRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKA 392

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +      N  R+
Sbjct: 393 PILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQ 452

Query: 356 AERL---FREANVSVVWE 370
           A  L    REAN ++  +
Sbjct: 453 ASDLVAVLREANQAINPK 470


>gi|325003093|ref|ZP_08124205.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 471

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 5/388 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL   GY   + +Q A + P +  +D+L  A TG+GKT AF L +  
Sbjct: 35  TFADLGLAPTLLAALDGLGYETPSPIQAAAIGPLIAGRDLLGQAATGTGKTAAFALPMLQ 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L            P  + +APTRELA+QVG  +    A+ G  VA   GG  +  +   
Sbjct: 95  RLADGRVSRDRGPKPFGIVLAPTRELAMQVGEAVTKYGAELGARVACVFGGAPIGPQLGQ 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV TPGR  D I    L++  ++  VLDEADEMLD+GF +DIE IL S+P+ R
Sbjct: 155 LRRGVDVVVATPGRAIDLINRGALSLDAIEVAVLDEADEMLDMGFVEDIETILGSTPEGR 214

Query: 181 RMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++FSAT+   I        +   D      A+   +   +   A  V  S    A+  
Sbjct: 215 QTVLFSATMPGRIQSLARTHLSDPADIRIKREATPEGEAPKVRQTAYHVPRSHVTVALGR 274

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVFC TRA V   T+ L     +  AL G + Q+ R+  ++ +R GR  +
Sbjct: 275 VLEMEQPTAAIVFCRTRADVDAVTETLTARGLRAEALHGGMDQEHRTRVVERLRAGRTEL 334

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L  V++ ++ S+PE+ +HR GR GRAGR+G+++ ++     R   
Sbjct: 335 LVATDVAARGLDIDSLTHVVNHDVPSSPESYVHRIGRVGRAGREGVAITLVTPGSVRHLR 394

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            + R    SV   P PS   +R     R
Sbjct: 395 NIERLIGGSVPSAPVPSPADLRTVRLAR 422


>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
 gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
          Length = 445

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL ++GY   TSVQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  + E L   T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +         +      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHADNLDHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF   R +V   +  L +   +   L G+++Q +R+ A+  +++    V 
Sbjct: 247 INDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKENVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           ++TDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEEPLKPRIIEGLE 384


>gi|254572992|ref|XP_002493605.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|238033404|emb|CAY71426.1| Essential ATP-dependent RNA helicase of the DEAD-box protein family
           [Pichia pastoris GS115]
 gi|328354565|emb|CCA40962.1| ATP-dependent RNA helicase DDX5/DBP2 [Pichia pastoris CBS 7435]
          Length = 537

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 192/379 (50%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +  A+  +G+ + T++Q       L  KD++  A TGSGKT+++ L  
Sbjct: 99  ITSFDEAGFPDYVLTAVKAQGFPSPTAIQCQGWPMALGGKDMVGIAATGSGKTLSYCLPA 158

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+AL +APTRELAVQ+ +E     + + +      GGV   ++ 
Sbjct: 159 IVHINAQ-PLLKPGDGPVALVLAPTRELAVQIQKECSKFGSSSRIRNTCVYGGVPKGQQI 217

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  GA IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 218 RDLARGAEIVIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 277

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT   ++  LA++Y  D ++VN+ S     +     +          DR   
Sbjct: 278 DRQTLMWSATWPKSVQALARDYLHDYIQVNVGSLELAASHNIKQVIEVLSEYEKRDRLTK 337

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF ST+ +    T  L    +  +A+ G+  Q+ER   LQ  R G+
Sbjct: 338 YLEQASEDKTSKILVFASTKRTCDELTTYLRSDGWPALAIHGDKEQRERDWVLQEFRSGK 397

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  V++ ++  N E+ +HR GRTGRAG  G +V        R
Sbjct: 398 SPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAVSFFTNANAR 457

Query: 355 RAER---LFREANVSVVWE 370
            A+    + +EAN  +  +
Sbjct: 458 MADDLVPILKEANQIIPED 476


>gi|323491944|ref|ZP_08097113.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323313802|gb|EGA66897.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 482

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 213/464 (45%), Gaps = 6/464 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   + +QE  +   L  +DV+ +AQTG+GKT  F L +   L  +N
Sbjct: 8   LSAPILKAIQDQGYDKPSPIQEQAIPAVLNGQDVMAAAQTGTGKTAGFTLPILERL--DN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV ++ +   L+ G+ 
Sbjct: 66  GTRVKGNHVRALILTPTRELAAQVQENVFKYSRYQRLTSTVVFGGVKINPQMLKLRKGSD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 IVVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++ EN     I+          +   +V +++    K 
Sbjct: 186 ATFSQEIRELAKGLVNNPVEISVSPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+   +R    L +       + G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFCRTKHGANRLAHFLNKEEITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ EL +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAISLVEADEASDLFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA----AGFLR 422
           +        + + E    ++   P+     +  +K        +   +       AG  +
Sbjct: 366 LPRFELEGFKPVNELPESKLDTRPIKPKKPKKPKKPKTGHQDGQRSGDNARGNKPAGKNK 425

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            H        E    +   G  + ++ S + K   G   N + +
Sbjct: 426 RHFGHNKLNGENNGSNAKRGEGKAKNRSTSNKSSNGKPSNRRPN 469


>gi|303242080|ref|ZP_07328571.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
 gi|302590374|gb|EFL60131.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
           CD2]
          Length = 499

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 196/386 (50%), Gaps = 9/386 (2%)

Query: 1   MK-IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  F ++     I +AL E G+   T VQ   +   L  +D++V ++TGSGKT  FG++
Sbjct: 1   MKNSFNDLGISPPILKALEEMGFEAPTEVQSKAIPHILNHEDLIVMSKTGSGKTAVFGVS 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +      A  P  L + PTRELAVQV  EL+ +            G  S++ E
Sbjct: 61  MLQMIDPK------ADGPQGLILTPTRELAVQVDNELKKMAKHLDHHTTAVYGQHSMNVE 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV GTPGR  DHI    L   +++ ++LDEAD MLD+GF D +  I+ + P
Sbjct: 115 IQALRRGISIVTGTPGRAYDHIHTGNLITKNIRFLILDEADRMLDMGFLDQVVKIIRTLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R  L+FSATI P I  + K Y K  + + I S+ +    I+     +    ++  + +
Sbjct: 175 KDRVTLLFSATIPPEIRRICKEYMKQPLTIEIKSQTKTVDTIEQIYYRIDNQQKNTELNH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ ++FC+T+ +V +    L+   +   +L G++ Q  R   +Q  + G   +
Sbjct: 235 LLLIERPESCMIFCNTKIAVDKVQSFLSRKGYACQSLHGDIPQARRMKTIQQFKQGDFHL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGI + +L LVI+ ++    +N +HR GRTGRAG  G ++ ++         
Sbjct: 295 LVATDVAARGIHIDNLSLVINYDVPLEKDNYVHRIGRTGRAGNGGRALTLVTSEDIMSLY 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA 383
            +       +     P+ E    + A
Sbjct: 355 AIEEHIGAMITEGELPTQEMYNAQKA 380


>gi|85859652|ref|YP_461854.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85722743|gb|ABC77686.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 413

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 196/371 (52%), Gaps = 5/371 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FEN  I + I + L++ G+   T +Q   +   ++ +DVL  AQTG+GKT AF + L
Sbjct: 1   MK-FENYTISEAIKQNLAQLGFRRPTDIQFKSIPSIMKGEDVLAIAQTGTGKTAAFAIPL 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E            + + PTRELA+Q+G     L   T V     IGGV    + 
Sbjct: 60  IDRIHREKSS-KRVFGIKCIVLVPTRELAMQIGEVFAGLAKHTRVKTFPLIGGVEQDEQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ+G  I++ TPGR+ D I    + +  ++ +VLDEAD MLDLGF +DI+F+     K
Sbjct: 119 RKLQDGIDILIATPGRMFDLIHQGHIRLDRIETLVLDEADHMLDLGFIEDIKFVKRMLHK 178

Query: 179 KRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K + L FSATI+P I        +  A+R+ I+ E+   +++ +  + V + D+   +  
Sbjct: 179 KHQTLFFSATINPEIKKLAFSQVKGTAIRIQISPEDPVSANVTHAVMFVEMDDKRFFLER 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +     IVF  TR    R  + +       + + GE  Q ER++ ++  ++G   +
Sbjct: 239 FLKENQESKVIVFVRTRIRAERVARAMERVGLHSLTIHGEKDQAERTSVMRKFKEGECNL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV+ARGID+PD+  VI+ +L    EN +HR GRTGR   KG+++     + + R +
Sbjct: 299 LIATDVSARGIDIPDVNYVINYDLPEKAENYVHRVGRTGRGDNKGIALSFCSSDEKMRLQ 358

Query: 358 RLFREANVSVV 368
            + +  N  + 
Sbjct: 359 EIQQFLNKEIE 369


>gi|86132795|ref|ZP_01051387.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 425

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 198/385 (51%), Gaps = 8/385 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+SE+GY   + +Q+  +   L  KDVL SAQTG+GKT  F L +   L+A  
Sbjct: 8   LSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHNLIANP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   +        +   V  GGV+ + + R ++ G  
Sbjct: 68  R--QGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  LA +   + V V    EN     +D +   V  S +   ++  +       
Sbjct: 186 ATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINEGNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R ++ L +      A+ G  +Q  R  AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  VI+ EL + PE+ +HR GRTGRAG  G ++ ++  +       + +     
Sbjct: 306 GLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKLLGEK 365

Query: 367 VV------WEPAPSVEAIRERDAQR 385
           +       ++P  ++E +++  A+ 
Sbjct: 366 LHSEVLEGFQPTDTLEQLKKEAAEN 390


>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 429

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 198/386 (51%), Gaps = 3/386 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++     +  A+  +GY   T +Q+  +   L+ KDVL  AQTG+GKT  F L +  
Sbjct: 2   LFKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L + +        P  L + PTRELA QV   +           AV  GGVS++ +++ 
Sbjct: 62  RLQSSHAEGQ-KRHPRVLVLTPTRELAAQVHESVRDYGRFLPFRSAVIFGGVSINPQKQK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VV TPGRL DH++ + +++S ++ +VLDEAD MLD+GF  DI  +L++ PKKR
Sbjct: 121 LIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLDMGFIRDIRKVLNAIPKKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I +LA  +      + +  +N     +      V    +   +   + 
Sbjct: 181 QTLLFSATFSKEIKSLAAEFLHQPTEIQVTPQNTAAELVSQIVYPVDKKRKRELLSQKIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   ++ ++ L +      A+ G  SQ  R+ AL   + G  RV +A
Sbjct: 241 EENWQQVLVFTRTKHGANKLSEQLGKDGITSAAIHGNKSQGARTKALANFKQGSVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL +  E+ +HR GRT RAG++G +V ++  +  +    + 
Sbjct: 301 TDIAARGIDIDKLPHVVNFELPNVAEDYVHRIGRTARAGQEGHAVSLVCVDELKLLSDIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI 386
           +    S+     P  +      A+ I
Sbjct: 361 KLLGTSIEKVNLPGYDVDPSIKAEPI 386


>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
 gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
          Length = 546

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/421 (31%), Positives = 220/421 (52%), Gaps = 12/421 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   + +A++  GY   T +Q   +   +   DV+ +AQTG+GKT  F L + +
Sbjct: 19  TFSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTAGFALPIIN 78

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+   +   SPA  P+ AL IAPTRELA Q+   ++     T +  A   GGV +  + 
Sbjct: 79  VLMPSASHSASPARHPVRALIIAPTRELADQIHDNVKTYIQFTPLRSAAVFGGVDMQPQT 138

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++ TPGRL DH++ K +N+S ++ +VLDEAD MLD+GF  DI+ I++    
Sbjct: 139 NALRAGVEILIATPGRLLDHVQQKSVNLSQVQLLVLDEADRMLDMGFLPDIQRIINLLNP 198

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVN 237
           +R+ LMFSAT S  I  LAK +  +   + +A  N    +++     + +   + +A+  
Sbjct: 199 RRQNLMFSATFSDEIRKLAKRFLNEPKLIEVARPNTLAENVEQTVYHVPSEDLKRDAVGA 258

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R  G +  IVF +T+    R  + L +  F   A+ G+ SQQER   L   + G  +V
Sbjct: 259 LIRERGIEQVIVFSNTKIGAGRLARHLQKEGFLAEAIHGDKSQQERLKTLDGFKAGEIKV 318

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  VI+ +L  +PE+ +HR GRTGRAG  GM++ ++  + Q+   
Sbjct: 319 LVATDVAARGLDIAELPAVINYDLPHSPEDYVHRIGRTGRAGASGMALSLMVDHDQKALA 378

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +     +  +      + R R  +R   D       +   ++  +      D   I 
Sbjct: 379 EIEKLTKRKLDVQELQLPASARGRGERRSRDD-------RRGHREGGEETARSEDSRGIG 431

Query: 418 A 418
           A
Sbjct: 432 A 432


>gi|119775819|ref|YP_928559.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 533

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/372 (33%), Positives = 191/372 (51%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL  +GY   + +Q   +   L  +D+L +AQTG+GKT  F L L   LL++ 
Sbjct: 8   LSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE-LLSQT 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     AL + PTRELA Q+   +        +   V  GGV +  +   L+ G  
Sbjct: 67  QKAGPKQ-VRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTLRRGID 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   ++   L+ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I TLA     +A  V++   N     +    V V  + +   +  + R++  + 
Sbjct: 186 ATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRFYRWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+   +R  + +     +  A+ G  SQ  R+ AL   + G  R+ IATD+AAR
Sbjct: 246 VLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ EL   PE+ +HR GRTGRAG  G +  ++     ++   + R    S
Sbjct: 306 GIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDIERLIKQS 365

Query: 367 VVWEPAPSVEAI 378
           +  +     E +
Sbjct: 366 LPRKEFVGFEPV 377


>gi|238897524|ref|YP_002923203.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465281|gb|ACQ67055.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 414

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 191/387 (49%), Gaps = 8/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+SE  Y   T +Q   +   L ++D++ SAQTG+GKT AF L L   L    
Sbjct: 8   LNADILRAVSEHNYSAPTPIQRQAIPLILAKRDLMASAQTGTGKTAAFTLPLLQLLSQNT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+ + +        +      GGVS++ +   L+ G  
Sbjct: 68  ALVKGRRQIRALILTPTRELAAQIAQNVSDYSQYLQLRSLAVFGGVSINPQTMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      L +S ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 128 ILIATPGRLLDLEHQNALALSQIEILVLDEADRMLDMGFIHDIRRILAKLPKKRQSLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +L+         V +A  N     I      V  + +   + +++     + 
Sbjct: 188 ATFSNEIKSLSTKLLTHPAFVEVAPCNTTAQQISQYVHFVDKNRKRALLSHMIGRGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +  ++ L +      A+ G  SQ  R+ AL   ++G+  V +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLSEQLNKDGITAAAIHGNKSQGARTRALADFKEGKITVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L   PE+ +HR GRTGRA   G ++ ++  +  +  + + R     
Sbjct: 308 GLDIDQLPYVVNYDLPHIPEDYVHRIGRTGRAQHAGEAISLVCVDEDKLLKDIERLLKRE 367

Query: 367 VV------WEPAPSVEA--IRERDAQR 385
           +       +EP   ++A  I++R   R
Sbjct: 368 IPRMAVSGYEPDLRIKAEPIQQRRQNR 394


>gi|187931712|ref|YP_001891696.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712621|gb|ACD30918.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 441

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 3/378 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +  +I  AL ++GY  LT +Q   +   L+  DV+ SAQTG+GKT  F L + 
Sbjct: 1   MKFSDLGLNSLICSALEKKGYTKLTPIQAQAIPIVLKGNDVMASAQTGTGKTAGFTLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +    + A+    L + PTRELA Q+  +++   A T +  AV  GGVS++ +  
Sbjct: 61  QRLLDQPK--AQANRIKTLILTPTRELAAQIQEQIQIYAANTHIRSAVIFGGVSINPQMM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA I++ TPGRL D      +    L   VLDEAD MLD+GF +D++ I +  PKK
Sbjct: 119 KLRKGAEILIATPGRLLDLYSQNAVKFDSLNTFVLDEADRMLDMGFINDLKKIHNLLPKK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT S  I  LA  +  +   V+    N     I  +   +  S++ NA+++++
Sbjct: 179 LQTLMFSATFSSEIKNLANEFLNNPQFVSADVVNTTVKKITQKIYTLDKSNKINALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       +VF  T+   ++ ++ L        A+ G  SQ  R+ AL   +     V +
Sbjct: 239 KDQNLHQVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDINVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  VI+ +LS+  E+ +HR GRTGRAG++G+++ +I  +       +
Sbjct: 299 ATDIAARGIDIAQLPCVINLDLSNVAEDYVHRIGRTGRAGQEGLAISLISADEVESLSNI 358

Query: 360 FREANVSVVWEPAPSVEA 377
                  +  E     EA
Sbjct: 359 EHLIGHLLPREELEGFEA 376


>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 190/390 (48%), Gaps = 10/390 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDINDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFRE----ANVSVVWEPAPSVEAIRERDAQ 384
           + R         V+    P  +A ++ +  
Sbjct: 367 IKRYTEELLKPRVIEGLEPRTKAPKDGELN 396


>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Oryctolagus cuniculus]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 125/425 (29%), Positives = 218/425 (51%), Gaps = 16/425 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVHCAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK     +  +D  
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRAREDVGDNDDT 434

Query: 415 KIAAG 419
           + A G
Sbjct: 435 EGAMG 439


>gi|156554399|ref|XP_001604593.1| PREDICTED: similar to DEAD box polypeptide 5 [Nasonia vitripennis]
          Length = 551

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 188/381 (49%), Gaps = 12/381 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + + ++GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 124 IQFFEEGNFPDYVMQGIKKQGYSEPTPIQAQGWPIAMSGKNMVGIAQTGSGKTLAYILPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + ++    +    P+AL +APTRELA Q+        + + V      GG     + 
Sbjct: 184 IVHINSQQP-LNRGDGPIALILAPTRELAQQIQTVASDFGSLSYVRNTCIFGGAPKGGQA 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 243 RDLERGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R++LM+SAT    +  LA+ Y  D  ++NI S     + +I     +    +++     
Sbjct: 303 DRQVLMWSATWPKEVRMLAEEYLVDYTQLNIGSLQLAANHNILQIIDVCQEQEKETKLGT 362

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R+
Sbjct: 363 LLQEIGNVNDDGGKTIIFVETKKKVENITRNIRRYGWPAVCMHGDKSQQERDYVLREFRN 422

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + +ATDVAARG+D+ D+  VI+ +  S+ E+ +HR GRTGR+   G S        
Sbjct: 423 KKGSILVATDVAARGLDVDDVRYVINFDYPSSSEDYIHRIGRTGRSQSSGTSYAFFTPQN 482

Query: 353 QRRAERL---FREANVSVVWE 370
            R+A+ L    REAN  +  +
Sbjct: 483 GRQAKDLINVLREANQIINPK 503


>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
 gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
          Length = 560

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +AL +  + + T VQE  +   L+ +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFEELNLSNDILDALYDMNFEDCTPVQEKCIPEILKGRDLMGVAQTGTGKTAAYLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVH 115
           S +   N    P ++   + ++PTRELA Q+ + ++        V +V + G        
Sbjct: 61  SMIDEGN---YPKNSVNCVIMSPTRELAQQIDQAMQGFAYHLDTVSSVAVYGGNDGNRYD 117

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E + ++ GA +++ TPGRL  HI    +++  +   VLDEAD MLD+GF DDI  I   
Sbjct: 118 QEMKSMRLGADVIIATPGRLISHITMGNIDLGKVNFFVLDEADRMLDMGFSDDIMKIASY 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  + +MFSAT+   I  +A+N  K+   V   + ++    I   A +   + +   I
Sbjct: 178 LPKNCQTIMFSATMPNDIEKMAQNLLKNPAEV-KLAVSKPAEKIKQSAYVCYTTQKIEII 236

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I +    K  I+F  ++  V +  + LA+       +  +L Q +R + +   + G+ 
Sbjct: 237 KHIFKAGDLKRVIIFSGSKQKVKQINQALAQLKINSGEMHSDLDQSQRDDIMYKFKSGQI 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ ++ ++    
Sbjct: 297 DVLVATDIVARGIDIDDIAMVINYDVPRDSEDYVHRIGRTARADRDGVAITLVNEDDMFA 356

Query: 356 AERLFREANVSVVWEPAPS 374
             ++ +  +  +   P P 
Sbjct: 357 FHKIEQFLDKEIEKNPLPE 375


>gi|73969117|ref|XP_860802.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 14 [Canis
           familiaris]
          Length = 614

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 456

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 457 VLEEANQAINPK 468


>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 426

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 190/370 (51%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY + T +Q   +   L+  D+L +AQTG+GKT  F L +   L +  
Sbjct: 8   LSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPILQRLSSIK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L + PTRELA QV   +      TG+   V  GGV  + + + +  G  
Sbjct: 68  AS-SGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKAIAAGLD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K ++++ ++ +VLDEAD MLD+GF  DI+ IL + PK+R+ L+FS
Sbjct: 127 ILVATPGRLLDLMSQKCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQRQNLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA         + +A  N  +  I      V  + +   + ++++ +  K 
Sbjct: 187 ATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLIHPVDRNQKHPLLAHLIKSNDWKQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +     +A+ G  SQ  R+ AL   + G+    +ATD+AAR
Sbjct: 247 VLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTALVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G++V ++  +  +    + +     
Sbjct: 307 GIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIEKLIKQK 366

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 367 LPQEVIAGFE 376


>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 515

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 1/367 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ GY + T +Q   +   L   D+L  AQTG+GKT  F L +   L A+ 
Sbjct: 19  LAEPILRAIADTGYTHPTPIQAQAIPLVLNGGDLLAGAQTGTGKTAGFTLPVLHLLHAKP 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P   P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    
Sbjct: 79  VKVKPGQ-PRCLILTPTRELAAQVEESVQTYGKHLKLTSMVMFGGVGINPQIERLKKPLD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PKKR+ L+FS
Sbjct: 138 ILVATPGRLLDHAAQKTIDLSAIEILVLDEADRMLDMGFIRDIKRVLALLPKKRQNLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     ++    LV+   + + + +++R+H  K 
Sbjct: 198 ATFSDEIKELADGLLHNPGFVEVARRNTASELVEQAVHLVSQGHKRDLVAHLIRHHDWKQ 257

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L++      A+ G  SQ  R+ AL   ++G   V +ATD+AAR
Sbjct: 258 VLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNGTLPVLVATDIAAR 317

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++     +  + + R     
Sbjct: 318 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGCSGAAVSLVDGEEIKLLKGIERLIKRE 377

Query: 367 VVWEPAP 373
           +     P
Sbjct: 378 IPRLDIP 384


>gi|49474271|ref|YP_032313.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
 gi|49239775|emb|CAF26165.1| ATP-dependent RNA helicase [Bartonella quintana str. Toulouse]
          Length = 467

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++   + + +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L +
Sbjct: 5   LNSFDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEHQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V V +   +   + I  + V       D   V  
Sbjct: 182 TRQTLFFSATMAPEITKLTKQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              H      KNAI+FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +
Sbjct: 242 ELIHNEGDELKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+
Sbjct: 302 LTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQK 361

Query: 355 RAERLFREANVSVVW 369
               +   +N  + W
Sbjct: 362 YISAIEEMSNEKIEW 376


>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60681868|ref|YP_212012.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|253565577|ref|ZP_04843032.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
 gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|251945856|gb|EES86263.1| ATP-dependent RNA helicase [Bacteroides sp. 3_2_5]
 gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
 gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
          Length = 418

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/378 (28%), Positives = 187/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNDNVLEALDAMRFEECTPIQEQAIPVILEGRDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   
Sbjct: 118 QKKGLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYEDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   V   + ++    I   A +   + +   + 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIVR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEEVPERVIIFASSKIKVKEVAKALKMMKLNVGEMHSDLEQVQREFIMHEFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVSRGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P+
Sbjct: 357 KNIENFLEKEIYKIPVPA 374


>gi|110637416|ref|YP_677623.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280097|gb|ABG58283.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 463

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/412 (25%), Positives = 199/412 (48%), Gaps = 10/412 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +   + +  A+ E GY   T +Q   +   L   D++  AQTG+GKT A+ L +   
Sbjct: 7   FEELKLNRQLLNAIEEAGYTEPTEIQSKAIPQILAGHDIIGVAQTGTGKTAAYALPILMK 66

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +     +++    P A+   PTREL +Q+   ++ L   T + +    GG+    ++  L
Sbjct: 67  I-----KYAQGHNPRAVIFGPTRELVMQIEIAMKQLAKYTDLRIVALYGGIGPKLQKEHL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I+V TPGR  D    + + +  +K +VLDEAD+M+D+GF   +  +L+  P+KR+
Sbjct: 122 QKGVDIIVATPGRFLDLYLEEEIVLKEVKTMVLDEADKMMDMGFMPQLRKMLEVIPRKRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILR 240
            L+FSAT+S  +  L + + +  +++ +  +    + I  +   +     + + +  ++R
Sbjct: 182 NLLFSATMSERVERLTEEFLEYPMKIEVTPQATPATLISQKLYKVPNFKTKIHLLEYLIR 241

Query: 241 YHGA-KNAIVFCSTRAS-VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +   AI+F  T+ S    +  ++ +       +     Q  R NA+   +DG  ++ 
Sbjct: 242 KDESVTRAIIFVRTKKSADDIYKFIIRKTTNTCRIIHANKDQNSRINAMDDFKDGTIKIL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++    ++ +HR GRTGRA   G+++    +      E+
Sbjct: 302 VATDVAARGIDVHEVSHVINFDVPIIYDDYIHRIGRTGRANHTGVAITFATEAEMYHIEK 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + +   + +  E  P+   I E   +   +    LD  +  E         +
Sbjct: 362 IEKIIRMQIPVEELPAAVEITETGFEESQEFARELDFYKKKEDPTYKGAFHE 413


>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
 gi|198272048|gb|EDY96317.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
          Length = 424

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEDSVLDALDAMNFQECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + L   +    P  A   + ++PTRELA+Q+ +++E       V          G+   +
Sbjct: 61  NQL---SKGGYPEDAINCIIMSPTRELAMQIDQQMEGFSYFMPVSSVAVYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    D V V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPTKIQQLAKTILHDPVEV-KLAVSKPAEKIIQAAYICYEAQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   TK L      V  +  +L Q +R   +   R+ R  
Sbjct: 237 SLFQSQQPERVIIFASSKLKVKEVTKALKRMKLNVGEMHSDLEQSQREEIMHEFRNRRID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q R 
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQTRF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +   P P 
Sbjct: 357 KQIETFLGKDIYKLPVPE 374


>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 466

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 193/386 (50%), Gaps = 7/386 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L  
Sbjct: 2   SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +   + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + 
Sbjct: 62  RL--SSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR
Sbjct: 120 LRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I  LAK    D V +++A++N     +      V    +   + +++R
Sbjct: 180 QNLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKPRKTALLSHLIR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +A
Sbjct: 240 TNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AE 357
           TD+ ARG+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +           E
Sbjct: 300 TDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTTEDAVDLYGIE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA 383
           R   E       E    V  + ERD 
Sbjct: 360 RFIGELIPRATEEGFEPVNPVPERDL 385


>gi|251796178|ref|YP_003010909.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543804|gb|ACT00823.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 578

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 140/462 (30%), Positives = 224/462 (48%), Gaps = 21/462 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ + + L   G  + T VQ+  +   L  +DV+  AQTG+GKT+AF L +   +  + 
Sbjct: 11  IPE-LTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQRIDIDK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+Q+  EL+ L A  G  V    GG  V  + R L N  H
Sbjct: 70  EQV------QALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNNSPH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+R + +N+  LK +VLDEAD+ML +GF  +++ I+D +P+ R+ ++FS
Sbjct: 124 IVVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTMLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA+NY K  V + I S N    +I    +      R  A+++++       
Sbjct: 184 ATMPDQIKRLAENYMKTPVDIKIQSANVTLDNIKQLVIETTDRGRQKALISMIETQRPYL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC T+    +  K L +  F+   L G+L+Q +R   ++  RD + ++ +ATDVAAR
Sbjct: 244 AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ ++ E  +HR GRTGRAG++G ++ +     +     + R     
Sbjct: 304 GLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIER----- 358

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S+ AI ER    I  D   + +              K D      G      A
Sbjct: 359 -------SINAILERRT--IEADGTIVKNTAPRSSSEGKSYDKKPDRGGRGRGGRDSKPA 409

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                         +G  R +   R          N +G+ W
Sbjct: 410 QGGRGGRGERNERGAGAGRSQAGGRGKPERAAVSSNAEGNPW 451


>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 432

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 128/361 (35%), Positives = 189/361 (52%), Gaps = 1/361 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GYV  T +Q   +   L  +D+L  AQTG+GKT +F L L   L A  
Sbjct: 14  LAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALPLLHRL-AAT 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +P +    L +APTREL  Q+    E       V V    GGVS   + + L+ G  
Sbjct: 73  PRPAPKNGARVLVLAPTRELVSQIADGFESFSRHQPVRVTTIFGGVSQVHQVKALEEGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V  PGRL D I     ++S L+ +VLDEAD+MLD+GF   IE I+ + P+ R  ++FS
Sbjct: 133 IIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQMLDMGFAKPIERIVATLPEDRHTVLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  L ++  ++  +V IA  +     I    + +  SD+  A++  LR  G   
Sbjct: 193 ATMPKSIAALVESLLRNPAKVEIAPPSSTVDRIAQSVMFLNASDKKAALLAQLRTPGIGQ 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF   +   +     L E      AL G  SQ +R  AL   R+G  +V +ATD+AAR
Sbjct: 253 AVVFTLQKNIANDVCTFLTESGITAEALHGNRSQGQRERALNAFREGDVQVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ +L S PE+ +HR GRTGRAGR G ++ +     +     + RE   +
Sbjct: 313 GIDVDTVTHVINHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRAWLHAVEREIGRT 372

Query: 367 V 367
           +
Sbjct: 373 L 373


>gi|296105809|ref|YP_003617509.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647710|gb|ADG23557.1| rhlE ATP-dependent RNA helicase [Legionella pneumophila 2300/99
           Alcoy]
          Length = 414

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +      +   
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKASQQTQ- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+
Sbjct: 69  -TSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++     +    + +  N  + 
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIEKLINQKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIKIKDFE 375


>gi|148358461|ref|YP_001249668.1| DEAD box family transporter ATP-dependent RNA helicase [Legionella
           pneumophila str. Corby]
 gi|148280234|gb|ABQ54322.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           str. Corby]
          Length = 414

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 191/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +      +   
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKASQQTQ- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+
Sbjct: 69  -TSRNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++     +    + +  N  + 
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIEKLINQKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIKIKDFE 375


>gi|330923164|ref|XP_003300130.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
 gi|311325925|gb|EFQ91808.1| hypothetical protein PTT_11286 [Pyrenophora teres f. teres 0-1]
          Length = 483

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 60  VTTFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPA 119

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 120 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 179 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R+  M+SAT    +  LA +YQKD ++VNI S +   +    + V V        R   
Sbjct: 239 DRQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAK 298

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 299 HLETIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
           + + +ATDVA+RGID+ ++  V + +  +N E+ +HR GRTGRAG  G ++ +   +   
Sbjct: 359 SPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYVHRIGRTGRAGANGTAITLFTTDNSK 418

Query: 352 MQRRAERLFREANVSV 367
             R   ++  E+   +
Sbjct: 419 QARDLVQILTESKQQI 434


>gi|328956797|ref|YP_004374183.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
 gi|328673121|gb|AEB29167.1| ATP-dependent RNA helicase RhlE [Carnobacterium sp. 17-4]
          Length = 423

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 188/363 (51%), Gaps = 2/363 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q +  AL E GY   T +QE  +   +  KD+L  AQTG+GKT AF L +   ++ E
Sbjct: 7   ELNQHLLHALKEAGYTKATPIQEDAIPHLMNNKDLLGCAQTGTGKTAAFALPILQNIMEE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +     A  AL +APTRELA+Q+G   +       + + V  GGVS + +   L+ G 
Sbjct: 67  --KTIGKGAIKALILAPTRELAIQIGDSFQTYAKYLPLNIQVIFGGVSQNPQTATLKRGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D IR   + ++ +   VLDEAD MLD+G   D+  I+   PKKR+ + F
Sbjct: 125 DILVATPGRLLDLIRQGFVKLNQVDFFVLDEADMMLDMGMLRDVRHIIRELPKKRQSMFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     + V+V +   +     I      VA +D+ N ++ +L+    +
Sbjct: 185 SATMPSEIEKLAGTILSNPVKVVVNPVSSTVEVIQQNVYRVAKTDKTNLLIYLLKNKQVE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VF  T+   ++  K L +  F   A+ G  SQ  R  AL+  +  +  V +ATD+AA
Sbjct: 245 RSLVFSRTKHGANKIVKKLLQAGFSAEAIHGNKSQNARQQALENFKTMKTSVLVATDIAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P+L  VI  +L   PE  +HR GRTGRAG  G ++    +        + + +  
Sbjct: 305 RGIDVPELSQVIQFDLPEVPETYVHRIGRTGRAGLSGKAISFCDETESDLLRDIEKLSKR 364

Query: 366 SVV 368
            V 
Sbjct: 365 KVP 367


>gi|304314413|ref|YP_003849560.1| ATP-dependent RNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587872|gb|ADL58247.1| predicted ATP-dependent RNA helicase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 425

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 141/425 (33%), Positives = 215/425 (50%), Gaps = 13/425 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I  AL + G+   T +Q   L   L   DV+  AQTG+GKT AF + L   L   
Sbjct: 10  DISGEINRALDDMGFEGTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFTIPLLENL--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P AL I PTREL +QV  E+  +     V V    GG  +  +  +L+ G 
Sbjct: 67  ----EPERVPQALVICPTRELCLQVTDEIRRIGKYLNVRVLAVYGGQGIGGQIAELRRGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL DHI    +++  +  VVLDEADEML++GF DDIE IL   P++R+ ++F
Sbjct: 123 HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATIS  +  +A+ Y +    + +  ++    D           D+   +  IL  +  +
Sbjct: 183 SATISKPVLRIAERYMRSPQILRVEKKHSPRIDEF--YFKTREEDKVELLDWILTSNDIR 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC+T+  V R  K L+   + V  + G+LSQ +R   ++  R GR  + IATDVAA
Sbjct: 241 MGLIFCNTKRRVQRLRKQLSRMGYSVDEIHGDLSQSKRERVMERFRKGRFNLLIATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +PD+E+V++ +L    E  +HR GRTGRAG  G S  ++      R  R+      
Sbjct: 301 RGIHVPDVEVVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGREVHRLRRIQSFTGK 360

Query: 366 SVVWEPAPSVEAIR---ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     PS + IR   E D   +L+  L   S  GD + + +++   +    I+   L 
Sbjct: 361 RIKKSNMPSPQEIRRGYEEDLVEVLRRNLKSKSY-GDSELLGNLVSEGYSFRDISHALLD 419

Query: 423 IHRAG 427
           +  + 
Sbjct: 420 VLESS 424


>gi|328771154|gb|EGF81194.1| hypothetical protein BATDEDRAFT_87448 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 131/423 (30%), Positives = 213/423 (50%), Gaps = 15/423 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP++I EA +  G+   + +Q A +   L  +D++  AQTGSGKT AF L +  TL    
Sbjct: 19  IPELI-EACTTLGFKKPSDIQCASIPVALTGRDIIGLAQTGSGKTAAFALPILQTL---- 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+      A  IAPTRELA Q+  + E L +  GV  AV +GG+ +  +   L    H
Sbjct: 74  --FANPQHLYACVIAPTRELAFQISEQFEALGSVIGVRCAVIVGGMDMMSQSIALSKKPH 131

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+      N+ HLK +V+DEAD +LDL F  +IE +L   P++R   +F
Sbjct: 132 VIICTPGRLVDHLENTKGFNLKHLKYLVMDEADRLLDLDFGAEIEKVLKVIPRERNTYLF 191

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +    + V+V +A++      +           ++  +  +L     +
Sbjct: 192 SATMTSKVEKLQRASLVNPVKVEVATKYSTVDTLLQYYTFFPYKQKECYLTYLLNELSGQ 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T AS  +   +L    F+ V L G+L+Q +R  AL   + G   + IATDVA+
Sbjct: 252 TCIVFTLTCASTQKLALMLRNLGFEAVCLHGQLTQPKRLGALAKFKSGGRNILIATDVAS 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q      +R+      
Sbjct: 312 RGLDIPGVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSITLVTQYDVEWYQRIEHAIQK 371

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-------KKMVDVLLAKHDPEKIAA 418
            +   P    ++      +R+ +   F      DE       K+       + D E+ AA
Sbjct: 372 KLTEYPFGHDKSAVLMLQERVSEAVRFAHMQLKDENLKHKGSKRGRGGDAEQRDDEESAA 431

Query: 419 GFL 421
             L
Sbjct: 432 KHL 434


>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 411

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +     + +A+ E GY   T VQ   +   L  KDV+ SA TG+GKT AF L +
Sbjct: 1   MKDFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +  R  P  A   L + PTRELA+QV  +   L   T + V    GG+S     
Sbjct: 61  IQHLL-DFPRKKPGPA-RVLVLTPTRELAIQVADQARTLAKHTMLKVFTITGGISYDEHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   +E +      
Sbjct: 119 ELLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADRMLDMGFGKVVERLNHECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + + L+FSAT     +   ++    + V V      R+   I          +   A++ 
Sbjct: 179 RSQSLLFSATLEGKGVREFSEKILNEPVEVEAEPSRRERKKIHQLYHRCDNMEHKLALLE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  I+F  TR  ++     L         + GE++Q  R+N +   RDG   V
Sbjct: 239 NILKEQAERTIIFVKTRERLAVLRGQLETMGIPCNWIQGEMAQSARNNMITRFRDGVINV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ +I  + Q   E
Sbjct: 299 LIATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGTAISLIEAHDQAMIE 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RVSRYMKEEVPE 370


>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
 gi|149131036|gb|EDM22242.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
          Length = 420

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 187/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NKL---SEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   +   + +R    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPSEI-KLAVSRPADKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+      +  I+F S++  V   TK L      V  +  +L Q +R   +   + GR  
Sbjct: 237 NLFMDEVPERVIIFASSKIKVKEVTKALKSMKLNVGEMHSDLEQVQREAVMHDFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P+
Sbjct: 357 KSIENFLEKEIYKIPIPT 374


>gi|123477017|ref|XP_001321678.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121904509|gb|EAY09455.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 521

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 179/373 (47%), Gaps = 5/373 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+PQ I E + E  + N T +Q   +   L+  D++  A+TGSGKT +F +    
Sbjct: 86  TFEELNLPQEIMEVIKENNWTNPTPIQSLSIPIGLKGNDMVGIAKTGSGKTASFLIPALM 145

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+  + S    P+ L ++PTRELA+Q          K G       GG   HR+   
Sbjct: 146 HISAQR-KISENDGPIVLVLSPTRELALQTDEVAAQFCVKMGYKHVCIYGGEDRHRQINK 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IV  TPGRL D ++    N +    +VLDEAD MLD+GF   I  I+ S  K R
Sbjct: 205 LRFHPEIVTATPGRLIDFLQSGVFNPNRANFLVLDEADRMLDMGFEPQIRAIIASLTKDR 264

Query: 181 RMLMFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              MFSAT    I  LA ++            E   +  I    +L+   ++    V IL
Sbjct: 265 ETFMFSATWPKEIRQLASDFLSNPIHMHVGGEELATNERIQQNVLLLQEHEKGEKCVEIL 324

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-LQMMRDGRARVC 298
           + + +K  I+F  T+ +V + +  L     + +++ G+ +QQER  A  +        V 
Sbjct: 325 KENQSKKIIIFAKTKRTVQQLSDFLKSKSIRCLSIHGDKTQQERVVALDKFKNARTGGVL 384

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++LV++ +   + E+ +HR GRT R  + G+++       +  A  
Sbjct: 385 VATDVAARGLDVTDIDLVLNYDFPGDIEDYVHRIGRTARGEKTGVAITFFTDENRFLASD 444

Query: 359 LFREANVSVVWEP 371
           L      S    P
Sbjct: 445 LVEVIKNSAQVPP 457


>gi|56784388|dbj|BAD82427.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|56785381|dbj|BAD82339.1| putative DEAD box RNA helicase [Oryza sativa Japonica Group]
 gi|222619731|gb|EEE55863.1| hypothetical protein OsJ_04500 [Oryza sativa Japonica Group]
          Length = 571

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 190/380 (50%), Gaps = 10/380 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    +A+++ G+V  T +Q       L+ +D++  AQTGSGKT+++ L     + A+
Sbjct: 162 NFPDYCMQAIAKSGFVEPTPIQSQGWPMALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQ 221

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+ +E     + +        GG     + RDL+ G 
Sbjct: 222 -PRLEQGDGPIVLILAPTRELAVQIQQESGKFGSYSRTRSTCIYGGAPKGPQIRDLRRGV 280

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D + G   N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 281 EIVIATPGRLIDMLEGGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYW 340

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYHG 243
           SAT    + +LA+ + ++  +V I S + + +    + + V         ++        
Sbjct: 341 SATWPREVESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMD 400

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATDV
Sbjct: 401 GSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDV 460

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLF 360
           AARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +            R   ++ 
Sbjct: 461 AARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAKFSRNLVKIL 520

Query: 361 REANVSVVWEPAPSVEAIRE 380
           REA   V     P++E++ +
Sbjct: 521 REAGQVVN----PALESMAK 536


>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
 gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
          Length = 428

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELQLNEQVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
             L   ++   P  +   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  DKL---SEGRHPEDSINCIIMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKHL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA N   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANNILNNPAEV-KLAVSKPADKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKIKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KNIENFLEKTIYKIPVPE 374


>gi|320580546|gb|EFW94768.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 529

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 193/390 (49%), Gaps = 14/390 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + +  +G+ N T++Q       L  +D++  A TGSGKT+++ L  
Sbjct: 95  ITSFDEAGFPDYVLKEVKAQGFPNPTAIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPA 154

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 155 IVHINAQ-PLLQPGDGPICLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKGQQI 213

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  GA I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 214 RDLARGAEICIATPGRLLDMLDSGRTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 273

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT   ++ TLA++Y  D ++VNI S +         I          D+   
Sbjct: 274 DRQTLMWSATWPKSVQTLARDYLNDYIQVNIGSLDLAASHNIKQIIDVCSEYEKRDKLAK 333

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           IVF ST+ +    T  +    +  +A+ G+  Q+ER   L   R GR
Sbjct: 334 HLETAMQDPQAKVIVFASTKRTCDEITAYMRSEGWPALAIHGDKEQRERDWVLSEFRSGR 393

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---N 351
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG KG ++ +       
Sbjct: 394 SPIMVATDVAARGIDVKGVTTVINHDMPGNVEDYVHRIGRTGRAGEKGTAITMFTDGNSG 453

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER 381
                  + REA   +     P ++A+ ++
Sbjct: 454 QAHDLITILREAKQEIP----PQLQALDKK 479


>gi|52840505|ref|YP_094304.1| DEAD-box ATP dependent DNA helicase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627616|gb|AAU26357.1| ATP-dependent RNA helicase, DEAD box family [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 414

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY   TS+Q   +   L   D+L SAQTG+GKT +F L +      +   
Sbjct: 10  EPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKASQQTQ- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+
Sbjct: 69  -TSPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  + + +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P +  LA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRALARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R  AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRIKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++     +    + +  N  + 
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIEKLINQKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIKIKDFE 375


>gi|328697410|ref|XP_001948642.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 718

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 192/372 (51%), Gaps = 10/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ + + L ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  A  +  +
Sbjct: 113 NFPESVVQELKKQGFSEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAAVHISNQ 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+    +     + +      GG     +  DLQNG 
Sbjct: 173 EP-LQRGDGPIALVLAPTRELAQQIQSVAKMFS--SSIRNTCIFGGTPKGPQAHDLQNGV 229

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 230 EIVIATPGRLIDFLERGSTNLKRVTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMW 289

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRY 241
           SAT    +  LA ++  D +++N+ S     +    + + V        +   ++  +  
Sbjct: 290 SATWPKEVQALAADFLVDYIQINVGSLELAANHNIQQLIEVCEDHEKDYKLFDLLMKISN 349

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F   +  V   T+ +    +   ++ G+ SQQ+R + L   R+G++ + +AT
Sbjct: 350 EPGFKAIIFVEKKKKVDELTRQIKNEGYIATSMHGDKSQQDRDHVLNEFRNGKSPILVAT 409

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           DVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR+ + G++      N  R+A+    
Sbjct: 410 DVAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSKQAGIAYTFFSTNNMRQAKDLIS 469

Query: 359 LFREANVSVVWE 370
           +  EA+  V  E
Sbjct: 470 ILEEAHQVVPEE 481


>gi|312131519|ref|YP_003998859.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311908065|gb|ADQ18506.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 408

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 195/379 (51%), Gaps = 9/379 (2%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK FEN   +P+ I  A+++ GY   T +Q  +L   L  +D++  AQTG+GKT AF + 
Sbjct: 1   MK-FENYRILPE-IKRAIADLGYKKPTDIQYKVLPKVLAGEDIMGIAQTGTGKTAAFAIP 58

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L +E      + +   L + PT ELA Q+    + L   T + +    G      +
Sbjct: 59  VLHLLASEKK----SKSLRCLVMVPTHELAQQIADVFKSLAKNTRLKIMALYGSTDQEPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + LQ G  ++V TPGR+ D      L++  +K ++LDEAD MLDLGF  DI  +    P
Sbjct: 115 IKALQKGVDVLVTTPGRMFDLQAQGHLSLEDIKFLILDEADRMLDLGFYQDIIDVKKRIP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ + L FSAT+   I  LA +  K+A+R+ I+ ++    +ID+  V+V++ D+   +  
Sbjct: 175 KRHQTLFFSATLDEKIKKLAYSTVKNAIRIQISPDDPVSKNIDHSVVMVSMEDKRFFLER 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  +  IVF  T+    R    +A    + V L  + S  ER  AL+  + G   V
Sbjct: 235 MITENPQQKIIVFVRTKVRAERVAAAMARVNIKTVTLHSDKSHIERKAALESFKKGETWV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV+ARG+D+P +E VI+ +L    EN +HR GRTGR  +KG +V           E
Sbjct: 295 LIATDVSARGVDIPLVEYVINYDLPDVAENYVHRIGRTGRGTQKGKAVSFCSDEELPLLE 354

Query: 358 RLFREANVSVVWEPAPSVE 376
            +      ++  +    +E
Sbjct: 355 SIEDYLGYTIASQTLSELE 373


>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 449

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|294676409|ref|YP_003577024.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
 gi|294475229|gb|ADE84617.1| ATP-dependent RNA helicase SrmB [Rhodobacter capsulatus SB 1003]
          Length = 548

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/481 (27%), Positives = 211/481 (43%), Gaps = 20/481 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  A+++ GY   T +Q   + P L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLKLDPAVLRAIADAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L +   R   A  P +L + PTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  VTMLSSGRAR---ARMPRSLVLCPTRELAAQVAENFDTYAKYTRLTKALLIGGVSFGEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     R+ +A +      I  + + +    RD      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLHAPARIEVARQATTSETITQKLIQITPPRRDQSAKAK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L  H F    + G+L Q  R+  L  
Sbjct: 238 RELLRAIIKSEGEACTNAIIFCNRKTDVDIVAKSLKTHGFNAAPIHGDLDQSLRTKTLDA 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  ++ IA+DVAARG+D+P +  V + +L S+ E+ +HR GRTGRAGR G +  +  
Sbjct: 298 FRDGSLQLLIASDVAARGLDIPAVSHVFNYDLPSHAEDYVHRIGRTGRAGRLGTAYSIGT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAP---SVEAIRERDAQRILQD--PLFLDSIQGDEKKMV 404
               +    +       +     P   S+     R+ ++   D  P    S     +   
Sbjct: 358 PADAKYLAAIEALVKQEIPRADPPEGFSLSEAAHREPRKYDDDKGPKSRSSRSRSGRGRD 417

Query: 405 DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +    + D   +    +    + +    E           R  D  R+            
Sbjct: 418 EKRPPREDRAPVIVA-VEEDDSHIVEVPEAKRAEPRRSEPRRNDGPRSESHRAEPIRPDG 476

Query: 465 G 465
            
Sbjct: 477 P 477


>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 445

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GG++       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGIAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAITRLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
 gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
          Length = 423

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F N+    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|56552313|ref|YP_163152.1| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241761630|ref|ZP_04759717.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753995|ref|YP_003226888.1| DEAD/DEAH box helicase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|56543887|gb|AAV90041.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373938|gb|EER63471.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553358|gb|ACV76304.1| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 458

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 181/369 (49%), Gaps = 2/369 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   GY   T +Q   +   L  KD+   AQTG+GKT AF L     L   N
Sbjct: 13  LDSSLVQALDGLGYSKPTPIQAQAIPHLLEGKDLCGIAQTGTGKTAAFALPSIHYLAT-N 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P      L ++PTRELA Q+ R          + V    GGV + R+ R L  G  
Sbjct: 72  PQARPQRGCRMLILSPTRELASQIARACNDYTRHLRMSVNAVFGGVPIGRQMRMLDRGTD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I  + L +  ++  VLDEAD+MLDLGF   +  I    PK R+ L FS
Sbjct: 132 ILVATPGRLLDLIDQRALVLKDVEVFVLDEADQMLDLGFIHALRRIDKLLPKNRQTLFFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-K 245
           AT+   I  L+  +  D V V++A ++     ++   + V  S++   +   L+      
Sbjct: 192 ATMPKTIQELSSQFLSDPVTVSVAPQSSTAERVEQFGIFVNQSEKQALLTITLKNTPGLD 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    R  + L        A+ G  SQ +R  AL   R+GR ++ +ATD+AA
Sbjct: 252 RALVFTRTKHGADRVVRHLEAAGLPAAAIHGNKSQPQRERALNAFRNGRLKILVATDIAA 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + EL +  E  +HR GRT RAGR G ++  I  + +     + R   V
Sbjct: 312 RGIDVPGVSHVFNYELPNVAEQYVHRIGRTARAGRDGQAISFIANDERSYLRSIERLTRV 371

Query: 366 SVVWEPAPS 374
            +   P P 
Sbjct: 372 KLQILPLPE 380


>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 444

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 192/373 (51%), Gaps = 7/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + +   GY   T VQE ++ P +  KD+L  AQTG+GKT AF L +   L+ E
Sbjct: 7   DLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPILHRLITE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQ 122
                  ++   L I PTRELAVQ+ + LE +   T V      GG +      E++ L 
Sbjct: 67  PHDARKINS---LIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKKALT 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  IV+ TPGR+  H+    + +  +K +VLDEAD MLD+GF DDI  I  + PK+R+ 
Sbjct: 124 SGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKERQN 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA         +   + ++    I   A +V    +   I  +L   
Sbjct: 184 LLFSATMPDKIRKLALKILHQPEEI-NIAISKPPEKIVQEAFVVFEEQKTGLIKQLLARK 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+FCS + +V + T  L +  F V  +  +L Q +R   L   ++ + ++ +ATD
Sbjct: 243 EFGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + +RGID+ D++LVI+ ++ ++ E+ +HR GRT RA   G +  +I +  QR+  R+   
Sbjct: 303 ILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIEEV 362

Query: 363 ANVSVVWEPAPSV 375
               V     P+ 
Sbjct: 363 LGKPVTKAEVPAA 375


>gi|209885134|ref|YP_002288991.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
 gi|209873330|gb|ACI93126.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
           carboxidovorans OM5]
          Length = 469

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 190/365 (52%), Gaps = 6/365 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSEKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTMLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV   ++   A   + +A+ IGG+S   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVQENIDHYCAGQKLNIALLIGGMSFGDQDAKLMRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 125 ILIATPGRLLDHTERGKLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT+ P I  + + +  +  +V I+      + +    + +         +       AK 
Sbjct: 185 ATMPPEIRRITETFLHNPEKVEISRPASTATTVTQSQIGIGSDAHAKRELLRQLLRDAKD 244

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAI+FC+ +  V+   K L +H F   AL G++ Q  R  AL   R G   + +A+DV
Sbjct: 245 LKNAIIFCNRKRDVAILHKSLQKHGFGAAALHGDMDQSARMTALDQFRKGELPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++    Q+    + +  
Sbjct: 305 AARGLDIPEVSHVFNFDVPYHPDDYVHRIGRTGRAGRLGTAISIVSPTDQKSILAIEKLI 364

Query: 364 NVSVV 368
             S+ 
Sbjct: 365 GQSIP 369


>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
 gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
          Length = 449

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY   +++Q   +   L  +DV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAPILKAVAEKGYDTPSAIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPILEIL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+    L + PTRELA Q+   +E       +   V  GGV ++ +   L+ G  
Sbjct: 66  GPRPRANQARTLILTPTRELAAQIAENIEVYSKHLRLTSTVVFGGVKINPQMTRLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLLDLYNQNAIRFHQLEILVLDEADRMLDMGFLRDIRKILAVLPQKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    D V +++   N     ++     V    +   + ++++ +  K 
Sbjct: 186 ATFSDDIRQLARGLINDPVEISVTPRNAAAKSVEQWMHPVDKKKKALLLTHLIKENDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ TK L E      A+ G  SQ  R+ AL   + G  R  IATD+AAR
Sbjct: 246 VLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEVRALIATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +  +    + +
Sbjct: 306 GIDIVQLPQVVNFDLPNVPEDYVHRIGRTGRAGSEGTAISLVCHDEMKELVAIEQ 360


>gi|315040958|ref|XP_003169856.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
 gi|311345818|gb|EFR05021.1| ATP-dependent RNA helicase DBP2 [Arthroderma gypseum CBS 118893]
          Length = 558

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 183/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 140 VQTFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 199

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 200 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 258

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 259 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 318

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++ +D ++V I S+    N + + I          DR   
Sbjct: 319 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 378

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 379 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 438

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +       
Sbjct: 439 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 498

Query: 352 MQRRAERLFREANVSV 367
             R   ++  E+   +
Sbjct: 499 QARDLVKILTESKQQI 514


>gi|315499759|ref|YP_004088562.1| dead/deah box helicase domain protein [Asticcacaulis excentricus CB
           48]
 gi|315417771|gb|ADU14411.1| DEAD/DEAH box helicase domain protein [Asticcacaulis excentricus CB
           48]
          Length = 501

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/498 (28%), Positives = 226/498 (45%), Gaps = 30/498 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     I +A+++ GY   T++QE  +   L   DVL  AQTG+GKT AF L +
Sbjct: 1   MTKFTDLGLNPDILKAVADTGYDTPTAIQEQAIPIALIGLDVLGIAQTGTGKTAAFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       S A  P A+ +APTRELA QV    E       +  A+ IGGVS+  + 
Sbjct: 61  IEKL---ASGRSRARMPRAIVLAPTRELADQVAEAFEKYAKYCKLNWALLIGGVSMADQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AKLDKGVDVLIATPGRLLDLFERSKVMLNGVQLMVVDEADRMLDMGFIPDIERIFKLTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-------SDR 231
            R+ L FSAT+ P IT L + + K+ VR+ ++     + +I      V           +
Sbjct: 178 SRQTLFFSATMPPEITRLTEQFLKNPVRIEVSRPATTNENITQYVYRVPSGDSKLLAKAK 237

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             A+  ++      N IVFC+ +  V    K L+ H F    + G+L Q  R   L   R
Sbjct: 238 RLALRTLIGQLEINNGIVFCNRKTDVDIVAKSLSVHGFNAAPIHGDLDQSLRMKTLDAFR 297

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G  ++ +A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G +  ++  N
Sbjct: 298 SGELKLLVASDVAARGLDIPSVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAYLILAPN 357

Query: 352 MQRRAERLFREANVS-------VVWEPAPSVEAIRERDA----QRILQDPLFLDSIQGDE 400
            ++  +++ +            V W P       RE+ A    +R  +D       +   
Sbjct: 358 DEKNYDKVLKLIKKEPNTLELDVDWSPLADARPEREKPARGRGERTERDRSARPRRERGR 417

Query: 401 K--KMVDVLLAKHDPEKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           K    V+ +     PE+I          +  R    A +   P +     D    D+   
Sbjct: 418 KGESAVEAVTEAVVPEEIVVDAAPPPEKKTRRRKSTAADTPPPRAKAVSDDFPLKDNEDS 477

Query: 454 KVGGGSRDNFKGSSWFSL 471
              G     F G     +
Sbjct: 478 LPKGPDCQGFGGHVPAFM 495


>gi|54293256|ref|YP_125671.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
 gi|53753088|emb|CAH14535.1| hypothetical protein lpl0304 [Legionella pneumophila str. Lens]
          Length = 414

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY   TS+Q   +   L   D+L SAQTG+GKT +F L +      +   
Sbjct: 10  EPLNRAVSELGYTTPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKAGQQTP- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  +    L + PTRELA+QV   +        +  AV  GGV  H + + L +G  I+
Sbjct: 69  -ASPNRVKVLILTPTRELAIQVHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  + + +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQRAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDRNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++     +    + +  N  + 
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIEKLINQKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIKIKDFE 375


>gi|326578004|gb|EGE27868.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis O35E]
          Length = 581

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 151/586 (25%), Positives = 256/586 (43%), Gaps = 54/586 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   +
Sbjct: 25  LNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---S 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +      AL + PTRELA+QV   +         + +V  +GG     + R L+ G 
Sbjct: 82  RKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M 
Sbjct: 142 QVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMS 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  +A+++  +  +V+I  E+    +          + ++N ++ +L     K
Sbjct: 202 SATWDGAVGKIAESFTVNPEKVSIKVESAHIDESV--YYCDDFNHKNNILLQVLNNPKIK 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAA
Sbjct: 260 QAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GR GRAGR G++V +   N  R+ E + R    
Sbjct: 320 RGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSINDNRQLEHINRYLKR 379

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +       +E  R    +  +R        +  + D ++  +    K            
Sbjct: 380 QMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHK------------ 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-----SLSVGSKQ 477
                    E     S    R+RF D  R+        ++ + +S F          ++Q
Sbjct: 428 --FGSRNRHEHRHERSFEGKRERFEDRERSVNRRENDENHERRNSRFEARSDRRFDKNRQ 485

Query: 478 KA-----EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
                   AR       R+               + T  +               D+  +
Sbjct: 486 GYYQADGTARQDKKAYTRNFDRRDND-------RNDTRFDKPTK---KFGTQTDFDRPRR 535

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNS-----------QDGATKRFKRF 567
            K  G +     G+   G KS+                A +RF  F
Sbjct: 536 NKAFGDKVKPNTGFDKFGGKSRPKAVEEIFFAKRQDKKAKRRFGEF 581


>gi|327302680|ref|XP_003236032.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
 gi|326461374|gb|EGD86827.1| ATP-dependent RNA helicase DBP2 [Trichophyton rubrum CBS 118892]
          Length = 538

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 183/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 121 VQTFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 180

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 181 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 239

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 240 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 299

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++ +D ++V I S+    N + + I          DR   
Sbjct: 300 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIK 359

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 360 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 419

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +       
Sbjct: 420 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 479

Query: 352 MQRRAERLFREANVSV 367
             R   ++  E+   +
Sbjct: 480 QARDLVKILTESKQQI 495


>gi|297538310|ref|YP_003674079.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257657|gb|ADI29502.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 630

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 145/574 (25%), Positives = 235/574 (40%), Gaps = 22/574 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   +  A+ E GY   T++Q   +       D++ SAQTG+GKT AF L   +
Sbjct: 24  SFESLNLDNALLRAIEESGYTTPTAIQSQAIPVVTAGHDLMASAQTGTGKTAAFMLPALN 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++  S    P  L + PTRELA QV                  +GG+    + + 
Sbjct: 84  LLATPHELKS--RGPRILVLVPTRELATQVNEAARKYGKFIRARTVSIVGGMPYPLQNKL 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  D+E I +    +R
Sbjct: 142 LSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAER 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           + L+FSAT+   I  +AK   K+   + +A +  +H++I+ R   +  ++ ++  + ++L
Sbjct: 202 QTLLFSATLDGDIARVAKQILKNPKTIQVAGQKEKHANIEQRLHYVDDMTHKNKLLEHLL 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F ST+       + L     +  AL G+++Q  R+  L  +R G  +V +
Sbjct: 262 IAPEVNQVIIFTSTKRHCDVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRQGDVKVLV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAG+ G+++       +    ++
Sbjct: 322 ATDVAARGIDINGISHVINYDLPKFAEDYVHRIGRTGRAGKTGIAISFASNMDRHILRKI 381

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +        E  R                I+ D  K       K  P     G
Sbjct: 382 EQFTGNRMEPGVVEGFEPKRAMKMDGPGNGRGDRGDIRRDAHKPGGRGGFK--PRDDRGG 439

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F   +             S     +R   +S   +  G S       S            
Sbjct: 440 FNNRNSEPRGDRPSFNRDSSSRDENRGNRESAPRESNGNSARPEFNRSE------RPSGD 493

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD--LLRRTVKLDKGIQLKYLG 537
             R        S   +R      R   D +F + +  G        +V   K       G
Sbjct: 494 RPRSF-GDRNSSGDRSRSE----RPSGDRSFGDRANAGAPNRSFGDSVAFGK-KPFSRDG 547

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
              P   G +     S+ ++  A +   R  GA 
Sbjct: 548 ASAPRSEGNR-GDRDSRGNRPDANRGDNRVLGAR 580


>gi|196012612|ref|XP_002116168.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
 gi|190581123|gb|EDV21201.1| hypothetical protein TRIADDRAFT_30653 [Trichoplax adhaerens]
          Length = 976

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 118/409 (28%), Positives = 207/409 (50%), Gaps = 6/409 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + ++L    Y   T VQ   +   +  +DV+  A+TGSGKT+AF L +   +L +N
Sbjct: 313 LSVKLLDSLKRVKYEKPTPVQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHILDQN 372

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              SP   P+ L + PTRELA+Q+ RE        G+ V    GG  +  +  +L+ GA 
Sbjct: 373 A-LSPGDGPIGLIMTPTRELAIQITRECRRFTKAIGMHVVCVYGGTGISEQIAELKRGAE 431

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D      G+  N+  +  +VLDEAD M D+GF   +  I++S    R+ +
Sbjct: 432 IVVCTPGRMIDMLLANNGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVESIRPDRQTV 491

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+      + + +   +   SDI+   V++   D+   ++ +L  + 
Sbjct: 492 MFSATFPRQMEALARKMLTKPIEIEVGGRSIVCSDIEQHVVIINEEDKFLKLLELLGLYQ 551

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + +VF   + S  +  K L +  +  ++L G + Q +R + +   ++G  ++ +AT 
Sbjct: 552 PYGSVLVFVEKQESSDQLLKDLMKASYPCLSLHGGMDQSDRDSTIVDYKNGVIKLLVATS 611

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ +L LV++ +  ++ E+ +HR+GRTGRAG KG +  +I ++  + A  + R 
Sbjct: 612 VAARGLDVKNLILVVNYDCPNHYEDYVHRAGRTGRAGNKGYAYTLITEDQGKYAGDIIRA 671

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             +S    P  S+E +     + +      +   +G   K      A+ 
Sbjct: 672 LELSKNSIP-ESLEKLWSDYKEELKAQGKHIAKNRGFSGKGFKFDEAER 719


>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 445

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|261379789|ref|ZP_05984362.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
 gi|284797475|gb|EFC52822.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           subflava NJ9703]
          Length = 463

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 228/432 (52%), Gaps = 19/432 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT SP I  LA+++      V +A++N  +++++   + V    + N + 
Sbjct: 181 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 357 ERLFR----EANVSVVWEPAP-----------SVEAIRERDAQRILQDPLFLDSIQGDEK 401
           E +      + NV  +    P             + ++  D++   +D    +       
Sbjct: 361 ESIKELTGSDLNVERIEGFEPYWWGNDNQDEAEAQPVQHNDSRSRREDRNKRNEYANKSD 420

Query: 402 KMVDVLLAKHDP 413
           K       K+DP
Sbjct: 421 KSSKKAEEKNDP 432


>gi|91206541|sp|Q7SBC6|DBP2_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-2
          Length = 562

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 131 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 190

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 191 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 249

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 250 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 309

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  D ++VNI S +   +  I     +V+ S++ + ++ 
Sbjct: 310 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 369

Query: 238 ILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 370 HLEKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 429

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + 
Sbjct: 430 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 489

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 490 SKQARELVGVLQEAKQQI 507


>gi|157126319|ref|XP_001654592.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882564|gb|EAT46789.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 699

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 197/391 (50%), Gaps = 10/391 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +P  I E  +++G+   T++Q   +   L  +D++  AQTGSGKT+A+       
Sbjct: 124 FEQGGLPDYILEEANKQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYIAPALVH 183

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D+      P+AL +APTRELA Q+ +       +         GG     + RDL
Sbjct: 184 ITHQ-DQLRRGDGPIALVLAPTRELAQQIQQVATDFGQRINANNTCVFGGAPKGPQIRDL 242

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 243 ERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 302

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
           +LM+SAT    +  LA+ +  D +++NI S N   +    + V V        +   ++ 
Sbjct: 303 VLMWSATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 362

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ +  + ++ V++ G+ SQQER   L   R+GR  +
Sbjct: 363 EISAENETKTIIFVETKRRVDDITRNINRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGI 422

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 423 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAG 482

Query: 358 RL---FREANVSVVWEPAPSVEAIRERDAQR 385
            L    REAN  +  + A   +    R  QR
Sbjct: 483 DLINVLREANQVINPKLAEMAKPGMNRHGQR 513


>gi|57235067|ref|YP_180931.1| DEAD-box ATP dependent DNA helicase [Dehalococcoides ethenogenes
           195]
 gi|57225515|gb|AAW40572.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dehalococcoides
           ethenogenes 195]
          Length = 560

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 208/472 (44%), Gaps = 20/472 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N    +   +   GY   T +Q   + P L   DV+  AQTG+GKT A+ L +  
Sbjct: 2   SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L+     +P      L +APTRELA Q+      L  +  +      GGV++ ++ R 
Sbjct: 62  KMLS-----TPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VV  PGRL DHI    ++I  ++ +++DEAD M D+GF+ DI+ IL    +  
Sbjct: 117 LRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P +  L    Q + V + I ++    S   +    V    +   ++ IL+
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTIQIGTQAPASSV-SHSVYPVKNHQKTPLLIEILK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ ++F  T+         ++   F   +L G LSQ  R   ++  R G  ++ +A
Sbjct: 236 TTETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+ ++   PE+  HR GRTGR  R G ++ ++          + 
Sbjct: 296 TDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQ 355

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFL--DSIQGDEKKMVDVLLAKHDPEKIA 417
           +  N  +        + A    D Q   Q   F        +     ++  A+  P  + 
Sbjct: 356 KLINSPIQRLRVDGFDYATTRNDGQNHSQRRGFAPRRGYSAEGYNRSEMPAAETSPNSLT 415

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           A               + P S      R  D +  F+  G S   F G   F
Sbjct: 416 A---------EMPSGNVRPFSQAVRSGRPADSAPRFRREGYSAPRFGGRPSF 458


>gi|116748890|ref|YP_845577.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697954|gb|ABK17142.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 471

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 198/376 (52%), Gaps = 7/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++++ Y + T +Q+  +   L  KDVL  AQTG+GKT  F L L   LL++ 
Sbjct: 8   LSAELLRAIADQHYKHPTPIQQQAVPVILDGKDVLAGAQTGTGKTAGFALPLLQ-LLSKR 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    ++  AL + PTRELA QV   +        +  AV  GGV+++ +   L+ G  
Sbjct: 67  PRTKGKTSVRALILTPTRELAAQVEESVASYGKYLPLKAAVVHGGVNINPQIAKLRRGID 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH++ + L++  ++ +VLDEAD MLD+GF  DI  IL   P +R+ L+F 
Sbjct: 127 ILVATPGRLLDHVQQRTLDLCAVEILVLDEADRMLDMGFIRDIRKILALLPVRRQNLLFF 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA++  +  V +     N     +      V    +   +  ++  +  + 
Sbjct: 187 ATFSDEIKTLAEDLLRSPVLIETERRNTPAESVAQLIHPVDRVRKRELLSFLIGSNNWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R T+ L     +  A+    SQ  R+ +L   + G  RV +ATD+AAR
Sbjct: 247 VLVFTRTKHGADRLTRQLEHDGIRAAAIHSNKSQATRTRSLADFKHGDVRVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL S   + +HR GRTGRA R G ++ ++  + + + + + R  N +
Sbjct: 307 GLDIDHLPHVVNFELPSVSRDYVHRIGRTGRAERSGTAISLVSIDEREQLKEIERLLNRA 366

Query: 367 VV------WEPAPSVE 376
           +       +EP PS++
Sbjct: 367 IPREIIKGYEPDPSIK 382


>gi|73992239|ref|XP_867139.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX27
           (DEAD-box protein 27) isoform 2 [Canis familiaris]
          Length = 763

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 119/454 (26%), Positives = 216/454 (47%), Gaps = 16/454 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 191 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 250

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R SP +    L + PTREL +QV    + L      + +   GG+ V  +   L+   
Sbjct: 251 -PRQSPVT--RVLVLVPTRELGIQVHSVTKQLAHHLAGLFSA--GGLDVKSQEAALRAAP 305

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 306 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTML 365

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ + S       +    V +  +    R+  +  +L  
Sbjct: 366 FSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLTR 425

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 426 TFTDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 485

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + + +
Sbjct: 486 DVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVK 545

Query: 362 EANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            A   V     P    ++ RD  +++ +D   +  ++ +EK++      +    +I    
Sbjct: 546 AAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAEEKEL------QQSEAQINTAK 599

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             + R          P          R   +  K
Sbjct: 600 RLLEREKGKEASNHEPERSWFQTKEERKKEKIAK 633


>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
 gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
          Length = 437

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/411 (32%), Positives = 220/411 (53%), Gaps = 20/411 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+ +   + I +A+ E+GYV+ T +QE  +   L+ +D+L  AQTG+GKT AF +  
Sbjct: 1   MK-FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPT 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +     +  +L + PTRELA+Q+   +      T +  AV  GGV    + 
Sbjct: 60  IQLL-----KKHYKQSIRSLIVTPTRELAIQIQENITAYAQYTTIRSAVIFGGVPQKPQE 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  I+V TPGRL D I+   ++ISH++  +LDEAD MLD+GF  D++ I+   PK
Sbjct: 115 RILKAGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRMLDMGFLPDVKRIIAKLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L FSAT+   I  LA++   + V + +   +     ID     V  +++   ++ +
Sbjct: 175 RKQTLFFSATMPSEIRKLAQSLLHEPVSIEVTPASTTVEKIDQSLYYVDKANKKRLLLKL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +  +NA+VF  T+++ +R  K L E+      + G  SQ  R  AL   ++G++RV 
Sbjct: 235 LQKNRVQNALVFTRTKSNANRLAKYLNENGVTSGVIHGNKSQNARQQALLQFKEGKSRVL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  V + ++ +  E  +HR GRTGRAGR+G ++     N     + 
Sbjct: 295 VATDIAARGIDVQELSHVFNFDIPNEAEVYVHRIGRTGRAGRQGCAIAFSDCNEAEYVKN 354

Query: 359 LFR--EANVSVVW---------EPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           + +    ++ VV          EPA S ++ + R  Q+    P   +  + 
Sbjct: 355 IEKLIRMHIPVVEDREFPMRNLEPAASAQS-QNRRRQKPAAKPSASNRSEN 404


>gi|5270|emb|CAA36873.1| p68 protein [Schizosaccharomyces pombe]
          Length = 550

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/387 (28%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  + + + + G+   T +Q+      +  +D++  + TGSGKT+++ L  
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E       + +      GGV +  + 
Sbjct: 181 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPLGPQI 239

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 240 LDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNA 234
            R+ +MFSAT    +  LA++Y  D ++V + S +         I           R   
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGK 359

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +A+ G+ +Q ER   L   R G+
Sbjct: 360 DIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 419

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+  +  V + +   N E+ +HR GRTGRAG KG +      +  +
Sbjct: 420 SPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAK 479

Query: 355 RAER---LFREANVSVVWEPAPSVEAI 378
           +A     +  EA   +     P +E +
Sbjct: 480 QARELVSILSEAKQDI----DPKLEEM 502


>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
 gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
           49242]
          Length = 450

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 190/371 (51%), Gaps = 3/371 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   +++  AL   GY   TS+Q   +   +  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTKFSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A+  R +P +A   L +APTRELA Q+              V V +GGVS   + 
Sbjct: 61  LNRLAADRRRPAPFTA-RTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  ++V TPGRL DHI    L ++  + +VLDEAD MLDLGF   I  I+   PK
Sbjct: 120 DMLARGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHMLDLGFIVPIRQIVAKLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA++  ++  +V++         +     LV    + + ++ +
Sbjct: 180 KRQTLLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHVFLVDGGAKRDMLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF  T+    R  + L        A+ G  SQ +R  AL   R GR RV 
Sbjct: 240 MNDADVSRAIVFTRTKRGADRVAEHLDAAGVGAEAIHGNKSQSQRIRALDAFRKGRTRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ EL   PE  +HR GRT RAG  G ++ +     ++   +
Sbjct: 300 VATDIAARGIDVDGVTHVVNYELPETPEAYVHRIGRTARAGASGRAISLCDNGERQLLRQ 359

Query: 359 LFREANVSVVW 369
           + +    ++ +
Sbjct: 360 IEKLTRQTLAF 370


>gi|260945084|ref|XP_002616840.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850489|gb|EEQ39953.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 517

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 9/403 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFVIPTL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 90  QMVKPKLNK------TQALILVPTRELALQTSQVVRTLGKHLGINCMVTTGGTNLKDDIM 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  H++VGTPGR+ D       + S     ++DEAD+ML   F++ IE IL   P+ 
Sbjct: 144 RLHDPVHVLVGTPGRVLDLASRNLADFSECPLFIMDEADKMLSREFKNVIEQILTFFPEG 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQSLLFSATFPYAVKSFMDKHLTKPYEINLMDELTLRGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDVQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            +E    +   PA   +++   + +  +  P  L+ +   ++K
Sbjct: 383 EQELGTEINPIPAVIDKSLYVNENEETIPRPFKLEELPKGKEK 425


>gi|319899018|ref|YP_004159111.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319402982|emb|CBI76535.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 454

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 198/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N+   + + +A+   GY   T +Q A +   L++KDVL  AQTG+GKT +F L +
Sbjct: 5   LDSFDNLGLSKKVIKAIKSVGYTTPTPIQSATIPHILQKKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARIPRTLILEPTRELAAQVKENYDKYGIHHNLNVALLIGGVSFEHQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA I++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  +IE I   +P 
Sbjct: 122 RKLERGADILIATPGRLLDHFERGKLLLVGVEILVIDEADRMLDMGFIPNIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    + V I         I  R V       D   +  
Sbjct: 182 TRQTLFFSATMAPEITQLTKKFLHSPIYVEITKTFSTAKTITQRLVKSGSKPWDKRAILR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              H      KNAI+FC+ +  +S   + L +H F V AL G++ Q  R+N L   +D +
Sbjct: 242 ELIHKEGDELKNAIIFCNRKKDISELFRSLVKHNFSVGALHGDMDQHSRTNTLANFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  ++
Sbjct: 302 LTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRNGKAFTIVTKADEK 361

Query: 355 RAERLFREANVSVVW 369
               +   +   + W
Sbjct: 362 YINAIEEISKEKIEW 376


>gi|190891965|ref|YP_001978507.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190697244|gb|ACE91329.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 527

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 195/374 (52%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 23  LTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 82

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 83  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 139

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 140 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKLIPF 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+ P I  LA  + ++  R+ +A        +  R           R    
Sbjct: 200 TRQTLFFSATMPPEIQKLADRFLQNPERIEVAKPASTAKTVTQRFVASHSKDYEKRAVLR 259

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 260 ELVRAQTELKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTTMLQNFRDGNL 319

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 320 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 379

Query: 356 AERLFREANVSVVW 369
            + + +     V W
Sbjct: 380 VDAIEKLIGEKVEW 393


>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 449

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IRRYTEELLKPRVIEGLE 384


>gi|291395377|ref|XP_002714089.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 4
           [Oryctolagus cuniculus]
          Length = 692

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 257 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 316

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ E     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 317 HLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHS 376

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 377 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 436

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    V +    + 
Sbjct: 437 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKR 496

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 497 EKLVEILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 556

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 557 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 616

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 617 DNHLAQPLVK 626


>gi|291395375|ref|XP_002714088.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
           [Oryctolagus cuniculus]
          Length = 706

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 271 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 330

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ E     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 331 HLMREGVTASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVMYGGTQLGHS 390

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 391 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 450

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    V +    + 
Sbjct: 451 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSTYLFVAVGQVGGACRDVQQTVVQIGQYSKR 510

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 511 EKLVEILRNTGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 570

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 571 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 630

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 631 DNHLAQPLVK 640


>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 449

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVSEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 445

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  +++G   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKEGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
 gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891]
          Length = 488

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/380 (33%), Positives = 188/380 (49%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L  +N
Sbjct: 8   LSAPILKAIEEQGYDTPSPIQEQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILERL--DN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL + PTRELA QV   +        +   V  GGV V+ +   L+ G  
Sbjct: 66  GQRVKGNHIRALILTPTRELAAQVQENVFKYSRHQSLTSQVVFGGVKVNPQMLKLRKGCD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL+  P KR+ L+FS
Sbjct: 126 VLVATPGRLLDLYQQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V V++  EN     I+          +   +V +++    K 
Sbjct: 186 ATFSAEIRELAKGLVNDPVEVSVNKENSTAVTIEQSIYPADKRKKAPMLVKLIKDGNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+   +R    L +       + G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 TLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNYELPHVSEDYVHRIGRTGRAGEVGRAISLVEADEAGELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +        + + E    R+
Sbjct: 366 LPRIELEGFKPVNELPESRL 385


>gi|149917594|ref|ZP_01906091.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
 gi|149821657|gb|EDM81055.1| putative ATP-dependent RNA helicase RhlE [Plesiocystis pacifica
           SIR-1]
          Length = 437

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 186/383 (48%), Gaps = 8/383 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +  A+ E GY   T +Q   +   +  +D+L  AQTG+GKT AF L +  
Sbjct: 2   SFETLGLAKPLLRAVREAGYETPTPIQTQAIPSAIAGRDILGCAQTGTGKTAAFSLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+           AL ++PTRELA Q+G  +        +   V  GGV    +  +
Sbjct: 62  RLDADPPDEPR---IRALIVSPTRELAAQIGANIGSYAKHLELWHTVIFGGVKDKPQIAE 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D +    +++  ++  VLDEAD+MLD+GF  DI  I+ + P KR
Sbjct: 119 LRRGVDVLVATPGRLLDLMGRGHIDLKRVEVFVLDEADQMLDMGFLPDIRRIVKALPSKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+  AI  LA     D V V +A  +           +   + R   +  +  
Sbjct: 179 QTLFFSATMPSAIKELAATLLDDPVEVAVARVSEPADVDQRLYFVDKGNKRKLLVDLLRA 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 ++VF  T+   +R  K L+       A+ G  SQ  R+ AL+  + G  RV +A
Sbjct: 239 DPSVSRSLVFSRTKHGANRIAKHLSAAGVSSAAIHGNKSQNARTRALEAFKGGELRVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAE 357
           TD+AARG+D+  +  VI+ +L + PE  +HR GRT RAG  G+++       +      E
Sbjct: 299 TDIAARGLDISKVSHVINFDLPNVPETYIHRIGRTARAGNSGIALSFCDVEERAYLVDIE 358

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
           RL R     +     P  +A+ E
Sbjct: 359 RLLRAHIERIEDHGYPPSQALPE 381


>gi|312376439|gb|EFR23520.1| hypothetical protein AND_12717 [Anopheles darlingi]
          Length = 696

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 184/393 (46%), Gaps = 11/393 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I + L   G+   T +Q       L  +D++  A+TGSGKT+++ +    
Sbjct: 97  TFEESGFPAEIIDELRYAGFTAPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALI 156

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+AL ++PTRELA Q+ +  +              GG    +++ D
Sbjct: 157 HID-QQPRLRRGDGPIALILSPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQED 215

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 216 LEYGVEIVIATPGRLIDFLSMNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDR 275

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  L K+Y KD V++N+ S     N     I           + + ++
Sbjct: 276 QTLMWSATWPDVVARLVKDYLKDYVQINVGSLKLAANHNILQIIDVCQESEKESKLSILL 335

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+F  T+  V   T+ +    +    + G+ SQ ER + L+  R GR  
Sbjct: 336 REIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNERDSTLKSFRSGRTP 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR    G +      N   +A
Sbjct: 396 ILIATDVAARGLDVDDVKFVINFDFPTTSEDYIHRIGRTGRCDNTGTAYTFFTPNNAAKA 455

Query: 357 ERL---FREANVSVVWEPAP-SVEAIRERDAQR 385
             L    +EA   +  +    +   ++ RD  R
Sbjct: 456 RDLIDVLKEAKQVINPKLVELANMKVKARDLDR 488


>gi|127511538|ref|YP_001092735.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126636833|gb|ABO22476.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 491

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 192/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L L   LL++ 
Sbjct: 8   LSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLE-LLSQG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + +    AL + PTRELA Q+   +        +  AV  GGV +  +   L+ G  
Sbjct: 67  PR-ARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLKRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   ++ S L+ +VLDEAD MLD+GF  DI+ IL   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLAK    + V +++   N   + +      V  + +  A+V +++    + 
Sbjct: 186 ATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQGDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R     
Sbjct: 306 GLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIERLIGKL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 LPRAEVEGFE 375


>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
 gi|187026294|emb|CAP34430.1| CBR-INF-1 protein [Caenorhabditis briggsae AF16]
          Length = 402

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 202/381 (53%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  + + +   +   G+   +++Q+  + P    KDV+  AQ+G+GKT  F +++
Sbjct: 28  VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSI 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   +          AL +APTRELA Q+ + +  L     V +  CIGG SV  ++
Sbjct: 88  LQRIDHSDPHV------QALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQ 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG H+VVGTPGR+ D I    L+ S +K  VLDEADEML  GF+D I  +  S P+
Sbjct: 142 RKLENGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYDVFRSMPQ 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++++ SAT+   +  +   + ++ +R+ +  +      I      +     + + + +
Sbjct: 202 DVQVVLLSATMPAEVLDVTDRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V + T+ +    F V  L G++ Q ER   ++  R G +RV
Sbjct: 262 LYNVVNVTQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGDMDQAERDTIMREFRSGSSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + +N  R+ +
Sbjct: 322 LITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLK 381

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            +       +   P    + I
Sbjct: 382 EIETYYTTQIEEMPESIADLI 402


>gi|308050173|ref|YP_003913739.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632363|gb|ADN76665.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 499

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/441 (29%), Positives = 207/441 (46%), Gaps = 22/441 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSPELARAVADKGYREPSPIQAQAIPAILAGKDVMAAAQTGTGKTAGFTLPMLQNL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA QV   ++       +   V  GGVS++ + + L+ GA 
Sbjct: 66  GTRARSNRVRALVLTPTRELAAQVAESVQTYGQNLPLRSVVVFGGVSINPQMQALRRGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLFSQNAVKFEDLELLVLDEADRMLDMGFIRDIRKILALLPKRRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+      V V+++  N     +  R   V    +   I  ++R H    
Sbjct: 186 ATFSGEIRELARGLLNQPVEVDVSPRNSTARTVVQRLHPVDKGRKPALISKLIREHNWHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R  + L     Q  A+ G  SQ  R+ AL   +DG  +  +ATD+AAR
Sbjct: 246 VLIFTRTKHGANRLAQKLERDGIQAAAIHGNKSQGARTRALAGFKDGTVQALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++     +  + + +     
Sbjct: 306 GLDIHQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAISLVCAEEFKLLQAIEKLIQKP 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +        E           Q+PL +    G++ K  D           AA   R +R+
Sbjct: 366 IERVELAGFEP----------QEPLPVPRQHGNQPKRTDA----------AAAPKRDNRS 405

Query: 427 GLCAPEEITPVSLVSGRDRFR 447
                 +    +    R R R
Sbjct: 406 KPRKEGDKPAGNDEQPRSRRR 426


>gi|241204840|ref|YP_002975936.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858730|gb|ACS56397.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 521

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 203/397 (51%), Gaps = 18/397 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   Q +  A+++ GY   T +Q   +   L  +D+   AQTG+GKT +F L +
Sbjct: 7   LTTFADLGLSQKVLSAVTDAGYTIPTPIQAGAIPFALERRDICGIAQTGTGKTASFVLPM 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L     R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + 
Sbjct: 67  LSLLEKGRAR---ARMPRTLILEPTRELAAQVAENFEKYGKNHRLNVALLIGGVSFEDQD 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +S ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 124 RKLERGADVLICTPGRLLDHFERGKLLMSGVEILVIDEADRMLDMGFIPDIERIAKMIPF 183

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ L FSAT+   I  LA  + ++  R+ +A        +  R           R    
Sbjct: 184 TRQTLFFSATMPSEIQKLADRFLQNPERIEVAKPASAAETVTQRFVASHGKDYEKRAVLR 243

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      KNAIVFC+ +  V+   + L  H F V AL G++ Q+ R+  LQ  RDG  
Sbjct: 244 ELVRAQTELKNAIVFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTMTLQSFRDGNL 303

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ +   + 
Sbjct: 304 QLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGAAFTLVTKRDTKF 363

Query: 356 AERLFREANVSVVW-------EPAPSVEAIRERDAQR 385
            + + +     V W        P P+ +    RD++R
Sbjct: 364 VDAIEKLIGEKVEWLSGDLTSLPPPAED---SRDSER 397


>gi|317052319|ref|YP_004113435.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316947403|gb|ADU66879.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 457

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 206/393 (52%), Gaps = 12/393 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     I  A++  GY   T VQ+  +   L+ +D+   AQTG+GKT  F L +  
Sbjct: 2   LFSDLGLSAPILRAVAAEGYTQPTPVQQQAIPAILQGRDIQAGAQTGTGKTAGFTLPMLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E           AL + PTRELA QV   +        +  AV  GGV++  +  +
Sbjct: 62  IL--ERQAIRGRRHVRALILTPTRELAAQVEESVRTYGKHLSLKSAVIFGGVAMGPQLAN 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DH++ K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R
Sbjct: 120 LRRGVDIVVATPGRLLDHVQQKSIDLSKVEFLVLDEADRMLDMGFIHDIRKVLALLPKER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  IT LA ++ KD V+V +A  N     +D    LV    +   +  ++ 
Sbjct: 180 QNLLFSATFSREITELASSFMKDPVQVEVARRNTAAETVDQVVHLVDRERKRELLSKLIS 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   + G+ RV +A
Sbjct: 240 EGKWQQVLVFTRTKHGANRLAQQLEKDGIHSAAIHGNKSQSARTKALADFKKGQVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+ +L  V++ EL + PE+ +HR GRTGRAG  G +  ++  + ++  + + 
Sbjct: 300 TDIAARGLDIDELPHVVNFELPNVPEDYVHRIGRTGRAGNCGKACSLVCVDEKQLLKGIE 359

Query: 361 REANVSVV------WEPAPSV--EAIRERDAQR 385
                 +       +EP PS+  E I+     R
Sbjct: 360 GLLKRDIPQEHIKGFEPDPSIPAEPIQNGRNNR 392


>gi|325091997|gb|EGC45307.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus H88]
          Length = 544

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 191/377 (50%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 125 VETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA 184

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 185 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA+++  D ++VNI S +   +  I     +V+  ++ + +  
Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            L      N     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  
Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483

Query: 354 RRAER---LFREANVSV 367
           ++A     +  E+   +
Sbjct: 484 KQARDLVAILSESKQQI 500


>gi|242080665|ref|XP_002445101.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
 gi|241941451|gb|EES14596.1| hypothetical protein SORBIDRAFT_07g004090 [Sorghum bicolor]
          Length = 1062

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 212/454 (46%), Gaps = 13/454 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K +    +   + + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +
Sbjct: 436 IKTWVQSGLTSKLLDTIKKLGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPM 495

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +     P   P+ L +APTREL VQ+  +++      G+      GG  V ++ 
Sbjct: 496 L-RHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKVLGINCVAIYGGSGVAQQI 554

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +L+ GA IVV TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +
Sbjct: 555 SELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQN 614

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +   R+ ++FSAT    +  LA+      V + +   +  + DI     +   ++R   +
Sbjct: 615 TRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPDTERFFRL 674

Query: 236 VNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +L     K  I VF  ++       K L +H +  ++L G   Q +R + +   +   
Sbjct: 675 LELLGEWYVKGKILVFVHSQDKCDSLLKDLFQHGYPCLSLHGGKDQTDRESTIADFKSNV 734

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IAT VAARG+D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I +  +R
Sbjct: 735 CSLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEER 794

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            A  L +   +S    P   ++A+ +R   ++ Q      + Q             ++ E
Sbjct: 795 YAPDLVKALELSEQAVPQ-DLKALADRFMAKVKQ-----GTEQAHGTGYGGSGFKFNEEE 848

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
             A    +  +A     EE    S        R 
Sbjct: 849 DEARKTAKKAQAREYGYEEDKSDSDSDEEGGVRK 882


>gi|118602178|ref|YP_903393.1| DEAD/DEAH box helicase domain-containing protein [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567117|gb|ABL01922.1| DEAD/DEAH box helicase domain protein [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 434

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 113/355 (31%), Positives = 180/355 (50%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSDSILKAIEQQGYREPSLIQAQAIPAILEGKDVMAAAQTGTGKTAGFILPILEIL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    L + PTRELA QV   +           +V  GGV ++ + R L++G  
Sbjct: 66  CSPIKFNQVRMLILTPTRELAAQVSDSVTIYGKYLSFKSSVVFGGVKINPQMRKLRDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +V DEAD MLD+GF  DI+ IL   P+K++ LMFS
Sbjct: 126 ILVATPGRLLDLYSKNAVKFDTLEIIVFDEADRMLDMGFIHDIKRILKILPQKKQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK+   + V +++   N     +      V    +   ++ +++ H    
Sbjct: 186 ATFSNDIRILAKSLVNNPVEISVTPRNSTVKTVKQWIHPVDKFKKQALLIYLIQEHSWYQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +       + G  SQ  R+ AL   ++ +  V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIATQLEKKKISATVIHGNKSQGARTRALADFKNAKVNVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+  L  V++ +L   PE+ +HR GRTGRAG KG ++ ++  +  ++   + R
Sbjct: 306 GIDIDQLPHVVNFDLPRVPEDYVHRIGRTGRAGSKGEAISLVSVDEAKQLFDIER 360


>gi|126290158|ref|XP_001370541.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
            [Monodelphis domestica]
          Length = 1175

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 250/560 (44%), Gaps = 28/560 (5%)

Query: 11   IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
            I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 527  ILNSLKKHGYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA-LE 585

Query: 71   PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 586  EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 645

Query: 131  TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 646  TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 705

Query: 188  TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
            T   A+  LA+      + V +   +   SD++ + +++   ++   ++ +   Y  + +
Sbjct: 706  TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGS 765

Query: 247  AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
             I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 766  VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 825

Query: 307  GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
            G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 826  GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 885

Query: 367  VVWEPAPSVEAIRERDAQRILQDPLFLDS-------IQGDEKKMVDVLLAKHDPEKIAAG 419
                P    +   +   Q+  +  +   S        + DE +       K   +K A G
Sbjct: 886  GTAVPHDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKK-LQKAALG 944

Query: 420  FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                         +    S+ + + R +D +        +                  ++
Sbjct: 945  LQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 1004

Query: 473  VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  AEA+ +M     ++ +   +I    + P ++   ++    + +   +    ++K
Sbjct: 1005 AQKNLGAEAQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPIEK 1059

Query: 530  GIQLKYLGGEKPDFRGYKSS 549
              + +  GG+   F+ Y+  
Sbjct: 1060 QEEERQDGGQNESFKRYEEE 1079


>gi|326569194|gb|EGE19255.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC7]
          Length = 581

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 256/586 (43%), Gaps = 54/586 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   +
Sbjct: 25  LNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---S 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +      AL + PTRELA+QV   +         + +V  +GG     + R L+ G 
Sbjct: 82  RKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M 
Sbjct: 142 QVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMS 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  +A+++  +  +V+I  E+    +          + ++N ++ +L     K
Sbjct: 202 SATWDGAVGKIAESFTVNPEKVSIKVESAHIDESV--YYCDDFNHKNNILLQVLNNPKIK 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAA
Sbjct: 260 QAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E + R    
Sbjct: 320 RGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKR 379

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +       +E  R    +  +R        +  + D ++  +    K            
Sbjct: 380 QMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHK------------ 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-----SLSVGSKQ 477
                    E     S    R+RF D  R+        ++ + +S F          ++Q
Sbjct: 428 --FGSRNRHEHRHERSFEGKRERFEDRERSVNRRENDENHERRNSRFEARSDRRFDKNRQ 485

Query: 478 KA-----EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
                   AR       R+               + T  +               D+  +
Sbjct: 486 GYYQADGTARQDKKAYTRNFDRRDND-------RNDTRFDKPTK---KFGTQTDFDRPRR 535

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNS-----------QDGATKRFKRF 567
            K  G +     G+   G KS+                A +RF  F
Sbjct: 536 NKAFGDKAKPNTGFDKFGGKSRPKAVEEIFFAKRQDKKAKRRFGEF 581


>gi|253996647|ref|YP_003048711.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983326|gb|ACT48184.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 576

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 145/580 (25%), Positives = 238/580 (41%), Gaps = 42/580 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I  A+ E GY   T +Q   +   +   D++ SAQTG+GKT  F L   +
Sbjct: 2   SFESLNLNPAILRAIEETGYTTPTPIQAQAIPVVMEGHDLMASAQTGTGKTAGFMLPALN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   ++  S +  P  L + PTRELA QV                  +GG+    + + 
Sbjct: 62  LLATPHE--SRSRGPRILVLTPTRELAAQVNEAARKYGKFLRARTVSIVGGMPYPLQNKL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL DH+    +++S L+ ++LDEAD MLD+GF  D+E I +    +R
Sbjct: 120 LSQPLDILVATPGRLLDHMERGRIDLSRLQMLILDEADRMLDMGFLPDVERICEQLSAER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + L+FSAT+   I  +A+   K+   V +A++  +H++I+ R      ++ ++  + ++L
Sbjct: 180 QTLLFSATLDGDIARIAQQILKNPKTVQVAAQKEKHANIEQRLHFVDDMTHKNKLLEHLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F ST+       + L     +  AL G+++Q  R+  L  +R G  +V +
Sbjct: 240 IAPEVNQTIIFTSTKRHADVLAEDLYAAGHKTAALHGDMTQGARNRTLTKLRHGDVKVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRA   G+++       +    ++
Sbjct: 300 ATDVAARGIDVHGITHVINYDLPKFAEDYVHRIGRTGRANNTGIAISFASNMDRHLLRKI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV----LLAKHDPEK 415
            +     +        E  R          P+ +D   G  +              D   
Sbjct: 360 EQYTGNRLEASVIEGFEPKR----------PVKMDGPSGGRRDGHKAGGRGGFKSRDDRG 409

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
              G               +     S R  F  DS   +    S       +    S G 
Sbjct: 410 GFGGRDGNRGDNRGGSRHESRGDNRSERPSFNRDSNESRGNRDSAPREVNGN----SAGY 465

Query: 476 KQKAEA-RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLK 534
             +++A R   P      G   +S G            V+ D      R+   + G   +
Sbjct: 466 AGRSDANRSERPA-----GDRARSFGD----------RVAFDKSSG-DRSRGNNAGAPNR 509

Query: 535 YLGGEKP-DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             G       + Y   G +S+   D      +R  GA  +
Sbjct: 510 SFGDSVAFGKKPYARDGQRSEGRNDRGAAPARR-DGARND 548


>gi|304403873|ref|ZP_07385535.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304346851|gb|EFM12683.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 500

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 187/371 (50%), Gaps = 10/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +   Q +   LS  G    T VQ   +   L   DV+V AQTG+GKT+AF L + 
Sbjct: 3   TTFSTLGVSQELTSVLSSYGITEPTPVQHKAIPLVLNGADVIVQAQTGTGKTLAFALPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +  +   AL + PTRELA+Q+  EL  L    G  +    GG  V  + R
Sbjct: 63  ERID------TTKNHTQALILTPTRELAIQITTELNKLAKTVGANILAAYGGQDVESQIR 116

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               +  HIV+ TPGRL DH+R + + +  ++ +VLDEAD+ML +GF  D+E I+ S P+
Sbjct: 117 KLRNSWPHIVIATPGRLLDHLRRETIRLGKIRMLVLDEADQMLHMGFLPDVETIVSSMPR 176

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  M FSAT+   I  L   Y      VNI  E      I   A+      +++ +V 
Sbjct: 177 QHRQTMLFSATMPAQIRKLGAEYMNGPTDVNITPEKVTVDKIRQVAIETTDRRKEDTLVE 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +    A+VFC T+    +  + L E       L G+LSQ +R   ++  R  R +V
Sbjct: 237 LIGKYQPYLAVVFCRTKVRAKKLNEALQERGISSDELHGDLSQAKREQVMKRFRQARLQV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  +PE  +HR GRTGRAG +GM+V ++  +      
Sbjct: 297 LIATDVAARGLDVEGVSHVFNYDVPQDPETYVHRIGRTGRAGNEGMAVTLVSSHDIGAVA 356

Query: 358 RLFREANVSVV 368
            + +   V + 
Sbjct: 357 NIQKTLGVKIE 367


>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 422

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 189/383 (49%), Gaps = 4/383 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAE 65
           +   +   LS+ G VN T +Q+  +   L+ +DVL  AQTG+GKT AFGL L    +   
Sbjct: 13  LDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQRFIDQP 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQREENSKEIRALVLVPTRELAQQVLDSLQAYAKGTDLKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D   V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPTEVQVTPSNSTAETVQQMVYPVDKKRKRELLAYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  +   + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDETPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE---AIRERDAQR 385
            +  E     E    +RE ++ R
Sbjct: 373 RLPQEWLKGFEPSPEVREENSPR 395


>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
 gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
          Length = 443

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 183/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL ++GY   TSVQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  + E L   T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEQAEELAEFTNLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +         +      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFAERLLNDPVQIEAEPSRRERKKIQQWYYHADNLDHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++    +  IVF   R +V   +  L +   +   L G+++Q +R+ A+  ++D    V 
Sbjct: 247 IKDFEMEKVIVFVRRREAVRELSDTLRKRGLRSTYLEGDMAQTQRNQAINRLKDSVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           ++TDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VSTDVAARGIDIDDVDFVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEEPLKPRIIEGLE 384


>gi|189467630|ref|ZP_03016415.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
 gi|189435894|gb|EDV04879.1| hypothetical protein BACINT_04020 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 206/463 (44%), Gaps = 19/463 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  NI + +  AL E+ Y   T +QE  +   L  +D+L  AQTG+GKT AF + +
Sbjct: 1   MMTFKQMNISEPVCRALLEKNYSTPTLIQEQAIPEALTGRDLLGLAQTGTGKTAAFAVPI 60

Query: 59  ASTLL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              LL      R     +  AL + PTRELA+Q+   L      T +   V  GGV    
Sbjct: 61  IEQLLAAPMPQRKGAPRSIRALILTPTRELAIQIDESLADYTRYTTLRHTVIFGGVKQKS 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L+ G  I+  TPGRL D +    + +  ++  VLDEAD MLD+GF  D++ +L   
Sbjct: 121 QTDELRAGTDILTATPGRLLDLMSQGFIRLDDVRHFVLDEADRMLDMGFIHDVKRLLPKL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P K++ L FSAT+  +I  LAK+   +  RV +   +     I      V    +   + 
Sbjct: 181 PPKKQTLFFSATMPDSIDRLAKSLLHNPARVEVTPASSVVEIISQSVYRVEKPQKKELLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        +VF  T+       + L+       ++ G+ SQ  R  AL   ++GR+ 
Sbjct: 241 QLLLGEAGHQVLVFSRTKHGADNIARYLSRRGIACESIHGDKSQNARQRALSNFKEGRSN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARGID+  L+LV++ +L   PE  +HR GRTGRAG +G ++           
Sbjct: 301 VIIATDIAARGIDIKGLDLVLNFDLPDVPETYVHRIGRTGRAGCEGRAIAFCSSEEAPML 360

Query: 357 ERLFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             + +   + +V +    PS+            Q+       +    +  +    +    
Sbjct: 361 REIEKLTGIKLVQQKHNLPSLGEPAASPTTSSAQNIALKSQSRTQGGRPQNNRRRE---- 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                     R     P   T  ++VS     RD++R  +   
Sbjct: 417 ---------DRKRPVEPTGSTQKAVVSAEKPKRDNNRPERPRP 450


>gi|114704563|ref|ZP_01437471.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
 gi|114539348|gb|EAU42468.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Fulvimarina pelagi HTCC2506]
          Length = 508

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 191/374 (51%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTTFSELGLSAKVLAAVEATGYTQPTPIQAEAIPHALERRDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L I PTRELA QV         +  + VA+ IGG+S   + 
Sbjct: 61  LTMLEKGRAR---ARMPRTLIIEPTRELAAQVEESFARYGKEQKLNVALLIGGMSFEEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 KKLDRGCDVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLLPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAI 235
            R+ L FSAT+ P IT L + + ++ VRV +A        ++ R V         R    
Sbjct: 178 TRQTLFFSATMPPEITKLTQQFLQNPVRVEVAKPASAALTVEQRLVASGAKDYDKRARLR 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +       NAI+FC+ +  VS   + L +H F   AL G++ Q+ R   L   R+ + 
Sbjct: 238 DLLRANEDVTNAIIFCNRKRDVSTLFRSLEKHGFSAGALHGDMDQRARMTMLHNFREDKL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  + 
Sbjct: 298 QLLVASDVAARGLDIPAVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTLVTKSETKH 357

Query: 356 AERLFREANVSVVW 369
            + + +     + W
Sbjct: 358 LDAIKKLIGTEIEW 371


>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
 gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
          Length = 416

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +  R  P  A   L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLL-DFPRRKPGPA-RILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|171693103|ref|XP_001911476.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946500|emb|CAP73301.1| unnamed protein product [Podospora anserina S mat+]
          Length = 488

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 195/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 115 TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 174

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 175 VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 228

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 229 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPAT 288

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   + T+   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 289 QVVVVSATLPHDVLTMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 348

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 349 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 408

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 409 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDI 468

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 469 ELYYSTQIDEMPMNVADLI 487


>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
 gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
          Length = 758

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 221/451 (49%), Gaps = 18/451 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 186 NLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLERLIYK 245

Query: 66  NDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                P  AP+   L + PTREL +QV    + L   + V   + +GG+ V  +   L++
Sbjct: 246 -----PRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRS 300

Query: 124 GAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G  I++ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+    + R+ 
Sbjct: 301 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQT 360

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNIL 239
           ++FSAT++  +  LA    K+  R+ + S       +    + +  +    R+  +  +L
Sbjct: 361 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 420

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++F  T+    R   +L     +V  L G LSQ +R  AL+  +D +  + +
Sbjct: 421 TRTFPDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILV 480

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G SV ++ +  ++  + +
Sbjct: 481 ATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 540

Query: 360 FREANVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A   V     P    ++ R   + + +D   +  ++ +E++M      +    +I  
Sbjct: 541 VKAAKTPVKARILPQDVILKFREKIENLEKDVYAVLCLEREEREM------QQSEAQINK 594

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
              ++      A  +    S    R+  + +
Sbjct: 595 AKKQLEEGKQEAATKGVERSWFQTREERKKE 625


>gi|307946857|ref|ZP_07662192.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
 gi|307770521|gb|EFO29747.1| ATP-dependent RNA helicase RhlE [Roseibium sp. TrichSKD4]
          Length = 471

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 209/464 (45%), Gaps = 19/464 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L    
Sbjct: 8   LSDKVLSAVDASGYTEPTAIQAGAIPHVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + + L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVQENFEKYGTNHKLNVALLIGGVSFGEQDKKLDRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLQGVEVLVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHG 243
           AT+ P I  L + + ++  RV +A  +    +I +            R      +     
Sbjct: 185 ATMPPEIQRLTETFLQNPARVEVARTSSTSENISHYLRAAEGKDYEKRAVLRELLEGAED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAIVFC+ +  +S   + L  H + V +L G++ Q+ R   L   + G  ++ IA+DV
Sbjct: 245 LNNAIVFCNRKRDISTLFRSLERHGYSVGSLHGDMDQRTRMTMLDNFKKGTIKLLIASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++ S+ E+ +HR GRTGRAGR G++  ++  + Q+  E + +  
Sbjct: 305 AARGLDIPEVSHVFNYDVPSHAEDYVHRIGRTGRAGRTGVAYTLVSGSDQKYLESIEKLI 364

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
              + W   P           R           +G ++         +  +   A   + 
Sbjct: 365 AQDIEWLGDPV--DFEAAHQAR-----------KGRKRGKTQKPTNDNTAQPAQAEAQKF 411

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             A      E    +    RD     ++       +   F G  
Sbjct: 412 EVADDVNSGERKKNARPKQRDTMNTHTKKRSEKKNNEPAFSGGV 455


>gi|307173398|gb|EFN64357.1| Probable ATP-dependent RNA helicase DDX5 [Camponotus floridanus]
          Length = 639

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +  +GY   T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 137 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPA 196

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +  R S    P+ L +APTRELA Q+            V      GG     + 
Sbjct: 197 IVHIIHQ-PRLSNGDGPIVLVLAPTRELAQQIQEVANCFGETAAVRNTCIFGGAPKGPQA 255

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 256 HDLERGIEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 315

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R++LM+SAT    +  LA+++  D V +NI S     +    + + V        +   
Sbjct: 316 DRQVLMWSATWPKEVRALAEDFLTDYVHLNIGSLTLSANHNITQIIDVCHEYEKDSKLYR 375

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   T+ +    +Q V++ G+ +QQER + LQ  R GR
Sbjct: 376 LLQEIGTEKENKTIIFVETKRKVDDITRNIRRDGWQAVSIHGDKNQQERDHVLQEFRSGR 435

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM+
Sbjct: 436 APILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMK 495

Query: 354 R--RAERLFREANVSV 367
                  + REA  +V
Sbjct: 496 HAGDLIEVLREAGQNV 511


>gi|332286324|ref|YP_004418235.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 477

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 194/366 (53%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+++ GY + T +Q   +   ++  D+L +AQTG+GKT  F L +   LL   
Sbjct: 12  LAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILHRLLQNP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L + PTREL  QV   +      T +   V  GGV+++ +   L+    
Sbjct: 72  AQGRKPGQPRVLILTPTRELTAQVEESVRTYSKHTSIRSMVMFGGVNINPQISALRKPLD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH + K +++S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 132 ILVATPGRLLDHAQQKTVDLSAVEILVLDEADRMLDMGFIRDIRRILALLPKQRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  L+K    D + +++A  N     ++   VL   + + + + +I+R  G   
Sbjct: 192 ATFSDEIRALSKGVLNDPIEISVARRNTASELVEQSVVLTEQAHKRDLLSHIIRESGWHQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L +      A+ G  SQ  R+ AL   +DG+  V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLVKDGLSAAAIHGNKSQAARTRALAGFKDGKVAVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++ +   +    + +     
Sbjct: 312 GIDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSTGSAMSLVDRTEIKLLSAIEKLIKRP 371

Query: 367 VVWEPA 372
           +     
Sbjct: 372 IERTTI 377


>gi|269104692|ref|ZP_06157388.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161332|gb|EEZ39829.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/413 (28%), Positives = 206/413 (49%), Gaps = 4/413 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +   Q + +AL+E GY  LT +Q+  +    R  DVL +AQTG+GKT AF L +   +L 
Sbjct: 6   QGFSQELVKALTEIGYEKLTPIQKQAIPQLRRGHDVLANAQTGTGKTAAFSLPIIQKMLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +   AL +APTREL  Q+   ++     T +      GG  +  + + L++G
Sbjct: 66  NPQPRSRMN-VRALILAPTRELVEQIANNIKDYTRYTDLTTVAVFGGRKIATQEKKLESG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+  + + +S+++ +V DEAD MLD+GF   I  IL +     ++++
Sbjct: 125 CDILVATPGRLLEHLELQNVLLSNIEFLVFDEADRMLDMGFISAIRTILSNVNSTPQIML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA        R+++  EN     + +    V    +   +  ++     
Sbjct: 185 FSATFSSQMNKLAGELLNKPKRISVTPENSTAETVAHVVYPVDEERKREMLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + ++  + L     + V   G+ +Q  R  AL+  ++G+ARV +AT+VA
Sbjct: 245 QQVLVFVNYKETANQLVEELELDGIKAVLCHGDKAQGARRRALKEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++ R   
Sbjct: 305 ARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLIQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             +        E  + RDA  +L+      S +    +  +    K   E+ A
Sbjct: 365 QRIHRVQLVGYEP-KSRDA--LLEKMNTKASFRDRRGRTNNPNEDKSSAERRA 414


>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
 gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
           family protein [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 211/400 (52%), Gaps = 9/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +AL+E GY   T +Q A +   L+ KDV+  AQTG+GKT AF L +   L  + 
Sbjct: 8   LNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPILQRLAEQP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R         L + PTRELA QV    E     + +  A+  GGVS+  + + ++ G  
Sbjct: 68  ER---KGQLRTLVLTPTRELAQQVFASFEKYGQHSELTAALAYGGVSIGEQIKAIKAGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+    +N+S+++ +V DEAD MLD+GF D+I  IL   PK+R+ L+FS
Sbjct: 125 IMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRMLDMGFIDEINNILRRLPKERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   AI  L+K      V + +   N+  S+++     V    +   I +++     + 
Sbjct: 185 ATFDDAIFKLSKKLLNQPVLIEVNQRNQAASEVEQIVYAVDADRKRELISHLIGAKNWQQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+ +     K + +   +  A+ G+ SQ  R  AL   ++G+ RV +ATDVAAR
Sbjct: 245 VLVFTRTKQTADELAKEMCKDGLKTQAIHGDKSQGARDKALSEFKEGKTRVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L+ VI+ EL    E+ +HR GRTGRAG KG+++ ++  +     E +    +  
Sbjct: 305 GIDIQQLQYVINYELPYIAEDYIHRIGRTGRAGEKGLAISLLSIDENWLLEEIEAVLDKR 364

Query: 367 VV------WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
           +       +EP  + E + +R   ++ +       + G +
Sbjct: 365 LPQQWLPGYEPDLTKEPVDKRKNGKVAEKRRAKKRLSGQK 404


>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
 gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
          Length = 728

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 192/373 (51%), Gaps = 10/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  I E L  +G+   T++Q   +   L  +D++  AQTGSGKT+A+ +     
Sbjct: 113 FEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVVPSLVH 172

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +         P+AL +APTRELA Q+ +      ++         GG     + RDL
Sbjct: 173 IQHQAT-IRRGDGPIALILAPTRELAQQIQQVATDFGSRVSANNTCVFGGAPKGPQIRDL 231

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 232 ERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQ 291

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
           +LM+SAT    +  LA+ +  D +++NI S N   +    + V V        +   ++ 
Sbjct: 292 VLMWSATWPKEVRNLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLT 351

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+++  + ++ VA+ G+ SQQER   L   R+GR  +
Sbjct: 352 EISAEPDTKTIIFVETKRRVDDITRIVNRNGWRAVAIHGDKSQQERDYVLSTFRNGRQGI 411

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A 
Sbjct: 412 LVATDVAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAN 471

Query: 358 RL---FREANVSV 367
            L    REAN  +
Sbjct: 472 DLINVLREANQVI 484


>gi|19528517|gb|AAL90373.1| RE50350p [Drosophila melanogaster]
          Length = 399

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 90  ----TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 385

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 386 TQIDEMPVNVADLI 399


>gi|307545041|ref|YP_003897520.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
 gi|307217065|emb|CBV42335.1| ATP-dependent RNA helicase RhlE [Halomonas elongata DSM 2581]
          Length = 433

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 186/376 (49%), Gaps = 4/376 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+  +GY   T +Q   +   L   D+L SAQTG+GKT  F L +  
Sbjct: 2   SFSDLGLRAELLSAIEAQGYTEPTPIQRQAIPAVLEGGDLLASAQTGTGKTAGFTLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +        AL + PTRELA QVG  +        +   V  GGV    +   
Sbjct: 62  RL--ADGKRPAKRGVRALVLTPTRELAAQVGESVRDYGRHLSLTSHVIFGGVGQQPQVDA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  I+V TPGRL D  +   +++S ++ +VLDEAD MLD+GF  DI  +L   P KR
Sbjct: 120 IRPGLDILVATPGRLLDLQQQGHVDLSGVETLVLDEADRMLDMGFIHDIRKVLKLLPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I TLA         + +A  N     ++     V    + + + ++++
Sbjct: 180 QNLLFSATFSNEIQTLANQLLDRPTLIEVARRNTTAETVEQAVYRVDREKKRDLLAHLIQ 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R  + L +     +A+ G  SQ  R+ AL   + G  +V +A
Sbjct: 240 SQRWFQVLVFTRTKHGANRLAEHLGKRDIPAMAIHGNKSQSARTKALSAFKSGDLQVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+ +L  V++ EL +  E+ +HR GRTGRAG +G +V ++  +     + + 
Sbjct: 300 TDIAARGLDIDELPHVVNFELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDEHGLLKNIE 359

Query: 361 REANVSVVWEPAPSVE 376
           +     +V    P  E
Sbjct: 360 KLIKRDLVKHIEPGFE 375


>gi|195339697|ref|XP_002036453.1| GM18037 [Drosophila sechellia]
 gi|195578081|ref|XP_002078894.1| GD23667 [Drosophila simulans]
 gi|194130333|gb|EDW52376.1| GM18037 [Drosophila sechellia]
 gi|194190903|gb|EDX04479.1| GD23667 [Drosophila simulans]
          Length = 459

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D+        AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDKI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
          Length = 596

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 184/379 (48%), Gaps = 11/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   + + +   + +  Y   T +Q   +   L  +D++  AQTGSGKT AF L +
Sbjct: 173 VESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPM 232

Query: 59  ASTLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              LL + D        P  + +APTRELA+Q+  E       T + V V  GG +V  +
Sbjct: 233 IHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQ 292

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + ++ G H++V TPGRL D I    +   ++  VVLDEAD MLD+GF   IE ++  + 
Sbjct: 293 LQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHAT 352

Query: 178 KKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              +      MFSAT    I  LA  +  + + V +       +D++    LV    +  
Sbjct: 353 MPEKQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRK 412

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL     K  +VF  T+ +      +++E  F   ++ G+  Q+ER  AL   + G
Sbjct: 413 KLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSG 472

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  V IAT VAARG+D+ ++  V++ +L  + ++ +HR GRTGR G KG +         
Sbjct: 473 RMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEAD 532

Query: 354 R----RAERLFREANVSVV 368
           R       ++  +A  SV 
Sbjct: 533 RAMASDLVKILTQAGQSVP 551


>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 583

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 202/385 (52%), Gaps = 10/385 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             FE++   P+ I +AL+E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 38  TTFEDLGLGPE-ILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPM 96

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A   +   A  P +L +APTRELA QV    +       +  A+ IGG S+  + 
Sbjct: 97  IEILAAGRAK---ARMPRSLILAPTRELAAQVAENFDKYGKYHPLKKALIIGGESMSDQV 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D      + ++ +K +V+DEAD MLD+GF  D+E I+   PK
Sbjct: 154 ALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRMLDMGFIPDVEKIVGLLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P I  LA  +  +   V +++     + +     +V   D+   + ++
Sbjct: 214 IRQTLFFSATMGPEIRRLADAFLMNPKEVKVSTGASAATTVVQALAVVEEIDKRETLRHL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    KNA +FC+ +  V    + L +H F VV L G+++Q  R   L+  + G AR+ 
Sbjct: 274 IRIEEVKNAFIFCNRKRDVDVLFRSLKKHGFDVVQLHGDMAQSARGETLEKFKKGEARLM 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + +DVAARGID+  +  V + ++  + E+ +HR GRTGRAG +G +  +   +  R    
Sbjct: 334 VCSDVAARGIDISAVSHVFNFDVPIHAEDYVHRIGRTGRAGMEGHAFTIASPDDGRFVGA 393

Query: 359 LFREANVSVVWEPAPSVEAIRERDA 383
           +      ++   P  SVE +   D 
Sbjct: 394 IEAMIGTTI---PRISVEGVPALDL 415


>gi|87310556|ref|ZP_01092685.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87286777|gb|EAQ78682.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 193/362 (53%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I EAL+   Y   T +Q   +   L   D++  AQTG+GKT AF L + + L  + 
Sbjct: 3   LSEAIQEALATEKYHTPTPIQGQAIPHLLEGSDLIGCAQTGTGKTAAFALPILNQLDLDR 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A AP  L ++PTRELAVQ+ +            +    GGV  + + R L+ G H
Sbjct: 63  SRAD-ACAPQVLVLSPTRELAVQIAQSFNVYGRNVKFRLTTIFGGVGQNPQVRALKRGVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL D +    +++S  K  VLDEAD MLD+GF   ++ I+   PK+R+ + F+
Sbjct: 122 VAIATPGRLLDLMDQGYVDLSQAKTFVLDEADRMLDMGFMPALKTIVSKLPKQRQTIFFT 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +  LA     + VR+ +A E+     ++ R + V+  D+   + + L+  G   
Sbjct: 182 ATMPPKVAQLASGLLNNPVRIEVAPESTTAERVEQRLMYVSQGDKRALLEHSLQAEGVGR 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L     +  A+ G  +Q +R+ AL+  R GR +V +ATDVAAR
Sbjct: 242 TLVFTKTKHGADRLAKELNASGIRTDAIHGNKTQNKRNRALESFRSGRLQVLVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ +L  +PE+ +HR GRTGRAG++G+++     +       + R    +
Sbjct: 302 GIDVDGVTHVVNFDLPIDPESYVHRIGRTGRAGKEGIALSFCDFSEHGTLRAIERLIRTT 361

Query: 367 VV 368
           + 
Sbjct: 362 IT 363


>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 497

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/474 (26%), Positives = 208/474 (43%), Gaps = 17/474 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+ + GY   T++Q   +   L  KD++  AQTG+GKT +F L +  
Sbjct: 37  TFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASFVLPMID 96

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A   R   A  P +L + PTRELA QV    E   A   + +A+ IGGV +  + + 
Sbjct: 97  VMAAGRRR---ALMPRSLILEPTRELAAQVAENFEKYGANHDLKMALLIGGVQMGDQLKT 153

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIEFI D  P+ R
Sbjct: 154 LDEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICDKLPETR 213

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I  LAK +  +  R+        + DI    V V    + + +  +L 
Sbjct: 214 QTMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVKARQKRDTLEWLLA 273

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AI+F + + +V    K L    F    + G++ Q  R   L   + G   + +A
Sbjct: 274 NDQVETAIIFANRKTTVRELNKHLQRQGFASGEIHGDMDQSSRLKELDRFKSGDVNILVA 333

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARG+D+  +  V + +   +P++ +HR GRTGRAG KG +  ++          + 
Sbjct: 334 SDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTLVADEDAEAIANVE 393

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +     +        E +R   A    ++    D  + ++             +      
Sbjct: 394 KLTGAKI---KVFGKEDVRVELADGSAKNTGSDDEAKDEKPAEKKSRSRSRKRDDEGDA- 449

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
                      E          R R RDD     V  G  +  K      L VG
Sbjct: 450 -----PRKPRRESAEDKPARKSRPRRRDDESDDPVPAGEWNGPKPG---FLDVG 495


>gi|254293945|ref|YP_003059968.1| DEAD/DEAH box helicase [Hirschia baltica ATCC 49814]
 gi|254042476|gb|ACT59271.1| DEAD/DEAH box helicase domain protein [Hirschia baltica ATCC 49814]
          Length = 478

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 217/470 (46%), Gaps = 17/470 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  A+ E GY   T +Q   +   ++ +DV   AQTG+GKT AF L +  
Sbjct: 2   TFDDLDLDPRVLSAVKETGYTEPTPIQAQAIPAIIQGRDVTGIAQTGTGKTAAFVLPMIH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       + A  P  L + PTRELA QV    E       + +A+ IGGVS   + + 
Sbjct: 62  KL---GQGRAKARMPRTLILEPTRELAAQVADNFEKYGVNHKLNMALLIGGVSFADQDKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P +R
Sbjct: 119 LTAGVDVLIATPGRLMDHFERGRLLMTGVQMLVIDEADRMLDMGFIPDIEKICKLLPPRR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVN 237
           + L+FSAT+ P I  L K +Q D  ++ +A   +    I              +   +  
Sbjct: 179 QTLLFSATMPPEIAKLTKQFQNDPKQIEVARPAQTAELITQHVTKSPSDKDEIKRGILRA 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+     KN IVFC+ +  V    K L  H F    + G+LSQ  R   L+  ++G   +
Sbjct: 239 IIASCEVKNGIVFCNRKREVDIVAKSLNAHGFDAAPIHGDLSQSYRMETLEKFKNGDLTL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+PD+  V +     N ++ +HR GRTGRAGR G S  ++    Q+  +
Sbjct: 299 LVASDVAARGLDIPDVGHVFNYAPPPNSDDYVHRIGRTGRAGRTGESYTIVSPRDQKLWD 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +  +  V      +++   E  + R  +     +  +  +++          P    
Sbjct: 359 AVVKRISKDVEEFTNDAIKKSIEEVSSRPERKQNNKNENKNSKRRNRHTKKHDDTP---- 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS-RDNFKGS 466
                + +    + E+   ++  +  DR     +  + G      +FKG 
Sbjct: 415 ----NVEKVESTSVEQSENMASKNANDRADKKKKTNRRGHDDLGPSFKGM 460


>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
 gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
          Length = 596

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 184/379 (48%), Gaps = 11/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   + + +   + +  Y   T +Q   +   L  +D++  AQTGSGKT AF L +
Sbjct: 173 VESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPM 232

Query: 59  ASTLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              LL + D        P  + +APTRELA+Q+  E       T + V V  GG +V  +
Sbjct: 233 IHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGTAVQHQ 292

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + ++ G H++V TPGRL D I    +   ++  VVLDEAD MLD+GF   IE ++  + 
Sbjct: 293 LQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSIEKVMGHAT 352

Query: 178 KKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              +      MFSAT    I  LA  +  + + V +       +D++    LV    +  
Sbjct: 353 MPEKQQRQTLMFSATFPAEIQELAGKFLHNYICVFVGIVGGACADVEQTIHLVEKFKKRK 412

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL     K  +VF  T+ +      +++E  F   ++ G+  Q+ER  AL   + G
Sbjct: 413 KLEEILNGGNPKGTLVFVETKRNADYLASLMSETQFPTTSIHGDRLQREREMALYDFKSG 472

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  V IAT VAARG+D+ ++  V++ +L  + ++ +HR GRTGR G KG +         
Sbjct: 473 RMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKGRATSFYDPEAD 532

Query: 354 R----RAERLFREANVSVV 368
           R       ++  +A  SV 
Sbjct: 533 RAMASDLVKILTQAGQSVP 551


>gi|310816695|ref|YP_003964659.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
 gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
           vulgare Y25]
          Length = 517

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 219/491 (44%), Gaps = 23/491 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A++E GY   T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTEFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L + PTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  IQLLSRGRAR---ARMPRSLVLCPTRELAAQVAENFDMYAKYTKLTKALLIGGVSFKDQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 TLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFQMTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--- 235
            R+ L FSAT++P I  +   +     R+ +A     + +I    V    S ++      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSAPARIEVARAATTNQNITQAVVQFKGSSKEREPSEK 237

Query: 236 ------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +         NAI+FC+ +  V    K L ++ +    + G+L Q +R   L  
Sbjct: 238 RAVLRALIEAESATLTNAIIFCNRKIDVDIVAKSLKKYGYNAEPIHGDLDQSQRMRTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  +  +A+DVAARG+D+P +  V + ++ S+ E+ +HR GRTGRAGR G +  +  
Sbjct: 298 FRDGSVKFLVASDVAARGLDIPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRTGSTFMICV 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++    +      ++    +P    ++E    R  +     +  Q +  +     LA
Sbjct: 358 PRDEKNLAAIEALVQSTITRVESP----LKELPPARKPRAEKPAEDKQTERPRREKPRLA 413

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR---DNFKGS 466
           ++ PE  AA    +  A           +  S R + R D    +V           +  
Sbjct: 414 RNRPE--AAPVEDVVEAVAAPVAAAPAPAEKSRRRKPRRDEPQAEVAVAETPIAPREERH 471

Query: 467 SWFSLSVGSKQ 477
                  G K 
Sbjct: 472 ERHDHKEGRKD 482


>gi|164687290|ref|ZP_02211318.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
 gi|164603714|gb|EDQ97179.1| hypothetical protein CLOBAR_00931 [Clostridium bartlettii DSM
           16795]
          Length = 480

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/529 (20%), Positives = 217/529 (41%), Gaps = 67/529 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F N  +   I ++L    Y   + VQ  ++   L +KD+LV ++TG+GK+ AF + +
Sbjct: 1   MNSFNNFNLDTEILKSLDILDYKIPSQVQSRVIPVLLDKKDILVKSKTGTGKSAAFAIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +    ++         L I PTRELA+QV  E+E +     +  +V +G   +  + 
Sbjct: 61  CNKIKKLENKLK------VLVIVPTRELALQVKEEIEKIGRLKMIKCSVILGKEPLKNQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G +++V TPGR+ DHI    +++  L   ++DE D+M   GF  DI  I+ + P 
Sbjct: 115 LELKQGTNVIVATPGRMIDHISRGSVDLDDLDYFIIDEVDKMFTKGFETDINTIMKNIPN 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
                 FSAT+   +  +   Y KD   + +  E    + I+ + + +     + +A+ N
Sbjct: 175 TSCKAFFSATVDNDLKEICNGYMKDYEYIEVDEEEILKNQIEEKYIKVEKQELKYDALKN 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     +  I+F +T+       + +    F V  + G++SQ+ R   +   +     +
Sbjct: 235 VLYKFKPETTIIFTNTKKQAEVLYENMKSEGFLVEQIHGDISQERRFYIIDSFKKHEFNI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I++D+ +RGI + D+ LVI+ ++ S+ E  +HR GRTGRAG+ G ++ ++  N  R  E
Sbjct: 295 LISSDIISRGIHIDDVSLVINYDIPSDSEIYVHRIGRTGRAGKHGKAISLVSNNECRDFE 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +       +                        + +  + + +K +  LL K+      
Sbjct: 355 NIEVYTKNKIEPIGI------------------EYCEKDKIEYQKTIKELLNKY------ 390

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              +          E +     +  + + R                              
Sbjct: 391 -ALVENQEQDEFKGEVVKIHISIGKKKKIR------------------------------ 419

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                 ++  L     +    +G I++  + + V++            K
Sbjct: 420 ---IGDIVGALSNIDSLENSDLGVIKIYDNYSTVDILNQKGKKFLNDYK 465


>gi|71907449|ref|YP_285036.1| helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847070|gb|AAZ46566.1| Helicase, C-terminal:Type III restriction enzyme, res
           subunit:DEAD/DEAH box helicase, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 183/376 (48%), Gaps = 3/376 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +AL   GY   T +Q   +   L  +D++ +AQTG+GKT  F L +  
Sbjct: 2   TFSSLGLAAPLLQALETLGYETPTPIQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D+ + +++   L + PTRELA QV            V      GGVS++ +   
Sbjct: 62  RLSESEDKVA-SNSIRVLVLVPTRELAEQVHASFRQYGEHLAVSTYAAYGGVSINPQMMR 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D      +    ++ +VLDEAD MLDLGF  +++ +  + P+KR
Sbjct: 121 LRRGVDVLVATPGRLIDLFTQNAIKFKQVQTLVLDEADRMLDLGFAHELDTLFAALPRKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I +LAK   +D + + +A  N     I    V V    +    + + +
Sbjct: 181 QTLLFSATFSDEIRSLAKGRLRDPLSIEVAPRNSTVKAIKQWVVPVDKKRKTELFLFMRK 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  TR  V      L     +  A+ G+  Q  R  AL+  + G  ++ +A
Sbjct: 241 DRKWGQVLVFVKTRRGVDELVATLLAKKIKADAIHGDKPQPARLRALESFKAGEVQILVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       + 
Sbjct: 301 TDVAARGLDIDDLPQVVNYDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEAPLLAAIE 360

Query: 361 REANVSVVWEPAPSVE 376
                ++  E  P  E
Sbjct: 361 TLIKQTLSREEEPGFE 376


>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 484

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/381 (33%), Positives = 195/381 (51%), Gaps = 8/381 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   Q + +AL  +GY   T +QE  + P L  +D+L  AQTG+GKT AF L  
Sbjct: 1   MTQFSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   ++R  P  +   L +APTREL  Q+    +   A  G+ V   +GG SV+++R
Sbjct: 61  IDRLREADNRI-PFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDR 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I++ TPGRL D I  K  N+  ++ +VLDEAD+MLDLGF   +  I    PK
Sbjct: 120 NKLHRGTDILIATPGRLLDLIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
           +R+ L FSAT+  AI  L   Y  + V+V++  E+     ID    +V   ++ + +   
Sbjct: 180 ERQTLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELI 239

Query: 237 ---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                      +  ++F  T+    R  K L+       A+ G  SQ +R  AL   R G
Sbjct: 240 LSGRHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRG 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARGID+P +  V++ EL + PE  +HR GRT RAG+ G+++    ++ +
Sbjct: 300 KTMILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDER 359

Query: 354 RRAERLFREANVSVVWEPAPS 374
              + + +     +     P 
Sbjct: 360 AYLKDIRKTTGAELDRLNLPE 380


>gi|34498347|ref|NP_902562.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104201|gb|AAQ60560.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 439

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/381 (32%), Positives = 194/381 (50%), Gaps = 6/381 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  AL   GY N T+VQ   +   +  +D+LVSAQTGSGKT AF L   +
Sbjct: 2   TFSDLGIAPTILRALQAAGYENPTAVQAEAVPAAIAGRDLLVSAQTGSGKTAAFLLPALT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L       +    P  L + PTRELA QV +              A  +GG S   + R
Sbjct: 62  KL--SERSTAKGQGPRVLVLTPTRELAQQVEKNALEYGKDLRWMRTACLVGGSSFGYQIR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH+R   ++ S L+ +VLDEAD MLD+GF DDIE I+ ++P+ 
Sbjct: 120 ALSRPIDLIVATPGRLMDHMRSGRIDFSRLEMLVLDEADRMLDMGFIDDIEAIVKATPET 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNI 238
           R+ ++FSAT+   +  +A+   +D  R+ IA       +  ++      L+ +   +  I
Sbjct: 180 RQTVLFSATLDGIVGRMAEKMTRDPQRIEIARTETSGGTIEEHLLYADDLNHKHRLLDYI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F +T+A        L++  +    L G++ Q  R+  L  +R GR +V 
Sbjct: 240 LKESGFDQCVIFSATKAYSEELADKLSDQGYSAACLHGDMPQSWRNRTLNDLRRGRIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V++ +L    E+ +HR GRTGRAGR G ++ +       +  R
Sbjct: 300 VATDVAARGIDVPTITHVVNFDLPKQAEDYVHRIGRTGRAGRDGTAITLAESKEFHKVRR 359

Query: 359 LFREANVSVVWEPAPSVEAIR 379
           + +     +       +E  R
Sbjct: 360 IEQYLKRQITEGVIDGLEPTR 380


>gi|310789728|gb|EFQ25261.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 551

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 189/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 127 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 186

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 187 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 246 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 305

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA ++  D ++VNI S     N + + +          DR   
Sbjct: 306 DRQTLMWSATWPKEVRALASDFLTDFIQVNIGSLELAANHRITQVVEVVNESEKRDRMIK 365

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 366 HLEKMMDNKENKVLIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 425

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG  G +V     +  +
Sbjct: 426 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAVTFFTTDNSK 485

Query: 355 RAERL---FREANVSV 367
           +A  L    REA   +
Sbjct: 486 QARDLVNVLREAKQEI 501


>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 565

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 195/389 (50%), Gaps = 12/389 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STL-LAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L  ++ ++            AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSVEA 377
               + R     +       +EP PS+ A
Sbjct: 361 LLRDIERLIKRELPRTVLEGFEPDPSIAA 389


>gi|225555683|gb|EEH03974.1| ATP-dependent RNA helicase DBP2 [Ajellomyces capsulatus G186AR]
          Length = 544

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 191/377 (50%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 125 VETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA 184

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 185 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQI 243

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 244 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 303

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA+++  D ++VNI S +   +  I     +V+  ++ + +  
Sbjct: 304 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 363

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            L      N     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 364 HLDRIMEDNKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 423

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  
Sbjct: 424 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 483

Query: 354 RRAER---LFREANVSV 367
           ++A     +  E+   +
Sbjct: 484 KQARDLVAILSESKQQI 500


>gi|260433348|ref|ZP_05787319.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417176|gb|EEX10435.1| dead/deah box helicase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 416

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/362 (31%), Positives = 188/362 (51%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL+   +   T +Q   +   +   D+L  AQTG+GKT+AFGL L   LLA+ 
Sbjct: 9   LAPALNDALARAKFTQPTPIQNQAIPLAMEGHDILGLAQTGTGKTLAFGLPLIDHLLAQP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +A  AL +APTREL  Q+   L  L  KT + VA  +GG S++++   L  G  
Sbjct: 69  GKPAPKTA-KALILAPTRELVNQIADSLRSLTTKTKLRVATVVGGQSINKQIMFLSRGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++  ++ +VLDEAD+MLD+GF   +  I       R+ ++FS
Sbjct: 128 ILVATPGRLIDLMDRGAVDLGSVRRLVLDEADQMLDMGFIHALRRIAPELGTPRQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y  +  RV ++   +    I      V+   +   +  IL       
Sbjct: 188 ATMPKQMEELSRAYLTNPQRVQVSPPGKAADKITQSVHFVSKPGKPEKLRQILSQDTDAL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  K L    +   ++ G  SQ +R  A++  R G   V +ATDVAAR
Sbjct: 248 TLVFARTKHGAEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRAGEITVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  VI+ +L   P+N +HR GRT RAGR+G ++     +      ++ +   + 
Sbjct: 308 GIDIPGVAYVINYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEFDLLRQIQKLMKIQ 367

Query: 367 VV 368
           + 
Sbjct: 368 IP 369


>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  +L + GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRSLEKLGYQTPTPVQAQAIPVVLAGRDLMAAAQTGTGKTAGFALPLLQLLAMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VT-ANSVRALILVPTRELAEQVHEAVRQYAENLPLRTYAVYGGVSINPQMMKLRGGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   L  + L+ +VLDEAD MLDLGF +++  I  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYRALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D   + ++  N   + +    V V    +    V+++R +  K  +
Sbjct: 189 FSDDIRLLAGQMLNDPQSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNMLSAIEMLTRSTLK 368

Query: 369 WEPAP 373
            E  P
Sbjct: 369 REIEP 373


>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 421

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 190/383 (49%), Gaps = 4/383 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LS+ G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   +    AL + PTRELA QV   ++     T + +    GG S+  +   L+ G 
Sbjct: 73  WVREENSKEIRALVLVPTRELAQQVLDSMQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D   V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPAEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  +   + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLVGLAVSLLSHDETPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE---AIRERDAQR 385
            +  E     E    +RE ++ R
Sbjct: 373 RLPQEWLKGFEPSPEVREENSPR 395


>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
 gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 120/402 (29%), Positives = 190/402 (47%), Gaps = 20/402 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +    GGVS            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +R+ L+F
Sbjct: 128 DLVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+             +      A   R+      +    A S +    +         
Sbjct: 188 SATLESDAVHDFAARLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLCNLLRQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F   R  V      L +   Q   L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I  + Q    ++ R  
Sbjct: 308 AARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYV 367

Query: 364 NVSV---------VWEPAPSV-------EAIRERDAQRILQD 389
              +             APS+       + ++ + AQ+ L +
Sbjct: 368 QEPLKSRVVDNLRPETKAPSLKNKGKPSKKVQAKRAQKKLDE 409


>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
 gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
           HRM2]
          Length = 402

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 199/384 (51%), Gaps = 5/384 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A++  GY   T +Q+  +   LR +DVL  AQTG+GKT AF L +  
Sbjct: 2   SFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPILE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + R      P  L +APTRELA QV    E L     +   V  GGV +  +   
Sbjct: 62  MLSKTSKR---TYTPRCLVLAPTRELAAQVQASFESLGRSLHLRSTVVFGGVGIQPQIDK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL DH   + L++S ++ +VLDEAD MLD+GF  DI+ +L   P KR
Sbjct: 119 LKKGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRMLDMGFIHDIKKVLKLLPGKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I   A     +   + +++ N+    +      V  + +   +  ++R
Sbjct: 179 QNLLFSATYSTEIKRFADGLLNNPKIIEVSASNKAADGVTQAVYPVQKTKKRELLSTLIR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R TK L     +  A+ G  SQ  R+ AL   ++G  +  +A
Sbjct: 239 NENWTKVLVFTRTKHGANRLTKQLITDGIKAAAIHGNKSQSTRTRALADFKNGSIKALVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ +L + PE+ +HR GRTGRAG  G+++ ++  + Q++ + + 
Sbjct: 299 TDIAARGLDIDMLPHVVNYDLPNVPEDYVHRIGRTGRAGATGIALSLVCSDEQKQLKEIQ 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQ 384
           R    ++  +       ++E  A+
Sbjct: 359 RLLKHNIPVKTMDGFFQVQETPAK 382


>gi|223590235|sp|A5DL80|DBP2_PICGU RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 554

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   + ++G+   T++Q       L  +D++  A TGSGKT+++ L  
Sbjct: 124 ITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+ +E     A + +      GG    ++ 
Sbjct: 184 IVHINAQ-PLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 243 RDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    + TL ++Y  D ++V I S     +   + I          DR   
Sbjct: 303 DRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQIVEVLSEFEKRDRLVK 362

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+ +    T  L    +  +A+ G+  Q ER   L+  + G+
Sbjct: 363 HLETATADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGK 422

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G +V +  +   +
Sbjct: 423 SPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSK 482

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REAN +V  E
Sbjct: 483 LGGDLCKIMREANQTVPPE 501


>gi|195452524|ref|XP_002073391.1| GK13178 [Drosophila willistoni]
 gi|194169476|gb|EDW84377.1| GK13178 [Drosophila willistoni]
          Length = 395

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 28  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 86  ----TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 142 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 202 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 262 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 322 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 381

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 382 TQIDEMPMNVADLI 395


>gi|85857908|ref|YP_460110.1| superfamily II DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85720999|gb|ABC75942.1| superfamily II DNA and RNA helicases [Syntrophus aciditrophicus SB]
          Length = 525

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 238/484 (49%), Gaps = 28/484 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E +P  I +A +  G+  L  VQ   +   L  +D+++ ++TGSGKT A+ L +   L  
Sbjct: 43  ECLPPTIRDAATRAGWTKLMDVQAKAIPYILARRDLMIQSKTGSGKTGAYLLPILGRLDP 102

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    A  A+ + PTRELA+QV RE   L A +G+  AV  GGV  H +    + G
Sbjct: 103 RKA------ACQAMILVPTRELALQVSREALLLSADSGIRTAVAYGGVGYHAQLEAFREG 156

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +V+GTPGR+ DH+    L++  L  +V DEAD ML +GF  D++ I +  P++    +
Sbjct: 157 AQLVIGTPGRILDHLIRSSLSLKALSILVFDEADRMLSMGFYPDMKRIQEFIPREINAYL 216

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT    +  LA  + +    ++++ +    ++ ++   LV    ++ ++V I+     
Sbjct: 217 LSATFPSHVLRLAGEFLRKPELLSLSRDQIHVTETEHVYYLVPGMGKERSLVRIIEAENP 276

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+T+A+V   + VL    +    LS ELSQ+ R   +  +R G  R  +ATDVA
Sbjct: 277 VSAIIFCNTKATVHFVSVVLKRFGYDADELSSELSQKAREKVMARIRSGLLRFLVATDVA 336

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+PDL  VI  E   +PE  +HR+GRTGR G  G+++ ++    Q R   + +  +
Sbjct: 337 ARGIDIPDLSHVIQYEPPEDPEAYIHRAGRTGRKGASGVAISLVAGMEQFRLRDIAKSFS 396

Query: 365 VSVVWEPAPSVEAIRERDAQRIL---------QDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + +     P  E +    +QR++         +D L ++ +Q     +V  LL   +   
Sbjct: 397 IDIQERSLPKDEEVETTVSQRVIALLEAKMRMRDRLQVEHMQ-RFIPLVKSLLQNEEEMD 455

Query: 416 IAAGFL-RIHRAGLCAPEEITP-----------VSLVSGRDRFRDDSRAFKVGGGSRDNF 463
           + A  +   + A L  P    P               SG  + R   ++ +   GSR + 
Sbjct: 456 LIAMLVDDFYMATLNTPPPQPPEVQKSSVSAGGPEAASGAKKKRRHRKSSRSMAGSRSDS 515

Query: 464 KGSS 467
             S+
Sbjct: 516 GEST 519


>gi|283856424|ref|YP_162949.2| DEAD/DEAH box helicase domain-containing protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|283775425|gb|AAV89838.2| DEAD/DEAH box helicase domain protein [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 506

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 223/459 (48%), Gaps = 14/459 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E GY   T VQ A +   L  +D++  AQTG+GKT +F L +   L    
Sbjct: 22  LSKELLQAVAELGYEEPTPVQAAAIPSVLMMRDLIAVAQTGTGKTASFVLPMIDILAHGR 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV    E       + +++ IGGV +  ++  L+ G  
Sbjct: 82  CR---ARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMSLLIGGVPMAEQQAALEKGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + +S  + +V+DEAD MLD+GF  DIE I    P  R+ L+FS
Sbjct: 139 VLIATPGRLLDLFERGKILLSSCEMLVIDEADRMLDMGFIPDIETICTKLPTSRQTLLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI  LA  +  +  ++ I+     ++ ID R + V+   +   + ++LR      
Sbjct: 199 ATMPPAIKKLADRFLSNPKQIEISRPATANTLIDQRLIEVSPRSKKKKLCDMLRAEKDHT 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC+ + +V +    L +  F V  + G++SQ ER + L+  ++G+  V +A+D+AAR
Sbjct: 259 AIIFCNRKTTVRQLATTLEQQGFSVGQIHGDMSQPERGSELERFKNGQISVLVASDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++ ++P++ +HR GRTGR G  G ++  +    +     + +   V 
Sbjct: 319 GLDVKGISHVFNFDVPTHPDDYIHRIGRTGRGGASGEALTFVTPADEEAITAIEKLMGVE 378

Query: 367 VVW--------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +           P+ S E +  + A+   +        +   K      L +   + + +
Sbjct: 379 IPRLGNRKKNTYPSKSEETVSPKQAKPAQEKSATPSPRKAPRKTETPKKLPEDRLDSVES 438

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            F    +          PVS    ++R        +V  
Sbjct: 439 DF---PKNQAPRNTASRPVSKARTQERALRPENLRRVKP 474


>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 456

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 192/380 (50%), Gaps = 3/380 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +  ++ +AL    Y   T VQ A + P L+ +D+L +A+TG+GKT AF L   
Sbjct: 1   MSFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +         + A+ P  L +APTRELA QV            + +   +GG+    + R
Sbjct: 61  TR--TAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLR 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH+  + + +  ++ ++LDEAD MLD+GF DD+E I    P  
Sbjct: 119 LLSRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRMLDMGFLDDVETIAKCCPPT 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+F+AT+   +  LA N  ++  RV + S+    +          +  +   + +  
Sbjct: 179 RQTLLFTATLDRRMAQLAGNLLRNPERVAVESQATSVNVEQRLHHADDMDHKRRLLQHFA 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+F +T+       + L+       AL G++ Q +R+  LQ +R G+ R+ +
Sbjct: 239 AQEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ +L  + E+ +HR GRTGRAG  G+++    +  +    R+
Sbjct: 299 ATDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVRI 358

Query: 360 FREANVSVVWEPAPSVEAIR 379
            R    ++     P +E  R
Sbjct: 359 ERYTKATLEVHVVPGLEPTR 378


>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
 gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
          Length = 460

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/406 (30%), Positives = 211/406 (51%), Gaps = 9/406 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AFGL + S +LA  
Sbjct: 14  LPTLLIKNLLIAGMSKPKPIQEQAIPVMLKGHDILGVAQTGSGKTLAFGLPILSQILALG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+   +        +   +  GGVS  ++ + ++ G  
Sbjct: 74  DKRCPKTA-RALILAPTRELAVQIDETIRTAAKGAHLSTCLIFGGVSRLKQIKRMEAGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +R K +++S  + ++LDEAD MLD+GF  D++ I     ++R+  +FS
Sbjct: 133 VLIATPGRLKDLVREKCVDLSQSRFLILDEADRMLDMGFIHDVKQIAKLLHQERQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LAK    D V++ +  +     +I  +   V  +++ N +  +L      +
Sbjct: 193 ATMPREIAVLAKCLLNDPVKIEVVPQGTTAVEICQKLYCVPTNEKKNVLSKLLTNPAFNS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ LA+  + V  + G  SQ  R +AL+  R+   ++ +ATD+AAR
Sbjct: 253 VIVFTRTKHGADSVTRSLAKIGYSVATIHGNKSQGARQSALKAFRERSVQILVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-RAERLFREANV 365
           GID+P +  VI+ +L    E+ +HR GRTGR G  G ++ +  + ++R R   + R   +
Sbjct: 313 GIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEKIERERLRAIERLIRM 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +  E  P              + P+  +S + +  K      +K 
Sbjct: 373 KLAVESVP-------EQFAAFPEKPILPESREKENDKERRFKKSKR 411


>gi|260945385|ref|XP_002616990.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
 gi|238848844|gb|EEQ38308.1| hypothetical protein CLUG_02434 [Clavispora lusitaniae ATCC 42720]
          Length = 397

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 191/372 (51%), Gaps = 9/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  +   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 26  TFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +              AL ++PTRELA+Q+   +  L     +    CIGG  V  + + 
Sbjct: 86  AIDWN------VRQCQALVLSPTRELAIQIHNVIRNLGTYMNIHTHACIGGKQVGDDLKK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L   +++ ++LDEADE++  GF++ I  I    P   
Sbjct: 140 LNQGQHIVSGTPGRVLDVIKRRNLATRNVQMLILDEADELMTKGFKEQIYEIYRHLPSTV 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           ++++ SAT++  +  +   +  D V++ +  E+     I            + + + ++ 
Sbjct: 200 QVVVVSATLTREVLEITSKFTTDPVKILVKKEDVTLEGIKQYHIQCEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T++ V+     L +  F V ++ G++ Q+ER + +   R G +RV I
Sbjct: 260 DSLTITQAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQEERDSIMNDFRTGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG+++ +I ++     + L
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGVAINLITKDDVAEMKDL 379

Query: 360 FREANVSVVWEP 371
            R   + +   P
Sbjct: 380 ERYYKIRIREMP 391


>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 435

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 195/390 (50%), Gaps = 4/390 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +     +  A+ ++GY   + +Q   +   L  KDV+ +AQTG+GKT AF L +  
Sbjct: 2   TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A      P     AL + PTRELA QV + +      T +  AV  GGV ++ +   
Sbjct: 62  RLNASAP-IKPHR-IRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQ 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D      ++   L+ +VLDEAD MLD+GF  DI  IL   P +R
Sbjct: 120 LRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRMLDMGFIHDIRRILKLLPAER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT +  I  L K + +D + V +AS N     ++     V    +   +  ++ 
Sbjct: 180 QNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPVDKKRKGALLRELVE 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R  + L +   +  A+ G  SQ  R+ AL+  + GR RV +A
Sbjct: 240 EKCWTQVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ +L +  ++ +HR GRTGRAG  G +  ++  +  ++   + 
Sbjct: 300 TDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLNDIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDP 390
           +     +  E     E   E  A   L+ P
Sbjct: 360 QLIQRHLPREYIDGFEPEHEVPASAPLRKP 389


>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 574

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 191/386 (49%), Gaps = 9/386 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   I +A+ E+GY   T +Q   +   L   D+L  AQTG+GKT AF L + 
Sbjct: 1   MKFEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPML 60

Query: 60  STLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             L       +        AL + PTRELA QV   ++       +   V  GGV ++ +
Sbjct: 61  HKLSQSEAARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKYVELTSTVIFGGVGMNPQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ G  I+V TPGRL D ++   L++S ++ +VLDEAD MLD+GF  D++ +L   P
Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRMLDMGFIHDVKKVLAVVP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K ++ L+FSAT S  I  LA    K  + + +   N     I      V    +   + +
Sbjct: 181 KDKQSLLFSATFSEEIRELAATLLKSPLTIQVTPRNTTVQRITQLIHPVGRGKKKALLAH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I++       +VF  T+   +   + L +     +AL G  SQ  R+ AL   + G  R 
Sbjct: 241 IVQERNWSQVLVFTRTKFGANNVAEFLTKSGINAMALHGNKSQAARTQALAGFKSGDIRA 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ DL  V++ ++ +  E+ +HR GRTGRAG  G +V ++  + +   +
Sbjct: 301 LVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGADGAAVNLVCLDEEGFMQ 360

Query: 358 RLFREANVSVV------WEPAPSVEA 377
            + R     +       + P P  +A
Sbjct: 361 AIERFTKQDIEVQIVEGFMPEPGEQA 386


>gi|326561884|gb|EGE12219.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 7169]
 gi|326563318|gb|EGE13585.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 46P47B1]
 gi|326565972|gb|EGE16133.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 103P14B1]
 gi|326568894|gb|EGE18963.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC1]
 gi|326571867|gb|EGE21872.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis BC8]
 gi|326575379|gb|EGE25304.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 101P30B1]
 gi|326576534|gb|EGE26442.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis CO72]
          Length = 581

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 256/586 (43%), Gaps = 54/586 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   +
Sbjct: 25  LNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---S 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +      AL + PTRELA+QV   +         + +V  +GG     + R L+ G 
Sbjct: 82  RKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M 
Sbjct: 142 QVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMS 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  +A+++  +  +V+I  E+    +          + ++N ++ +L     K
Sbjct: 202 SATWDGAVGKIAESFTVNPEKVSIKVESAHIDESV--YYCDDFNHKNNILLQVLNNPKIK 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAA
Sbjct: 260 QAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E + R    
Sbjct: 320 RGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKR 379

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +       +E  R    +  +R        +  + D ++  +    K            
Sbjct: 380 QMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHK------------ 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-----SLSVGSKQ 477
                    E     S    R+RF D  R+        ++ + +S F          ++Q
Sbjct: 428 --FGSRNRHEHRHERSFEGKRERFEDRERSVNRRENDENHERRNSRFEARSDRRFDKNRQ 485

Query: 478 KA-----EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
                   AR       R+               + T  +               D+  +
Sbjct: 486 GYYQADGTARQDKKAYTRNFDRRDND-------RNDTRFDKPTK---KFGTQTDFDRPRR 535

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNS-----------QDGATKRFKRF 567
            K  G +     G+   G KS+                A +RF  F
Sbjct: 536 NKAFGDKVKPNTGFDKFGGKSRPKAVEEIFFAKRQDKKAKRRFGEF 581


>gi|256831112|ref|YP_003159840.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580288|gb|ACU91424.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 741

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/448 (30%), Positives = 228/448 (50%), Gaps = 12/448 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++PQ +  A +   +  L  VQ   +   L  +DV+V +QTGSGKT AF L + 
Sbjct: 23  KAFSMADLPQTLQAAATRLNWAELMPVQVQTIPYMLGGQDVMVQSQTGSGKTGAFLLPIL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +   AP AL + PTRELAVQV R+ E L  + G+      GGV    + +
Sbjct: 83  DRIE------TGLGAPQALVLVPTRELAVQVTRDAEELGREAGIKPLSIYGGVGYKGQIQ 136

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +++GTPGR+ DH+    LN+  LK +V DEAD ML +GF  D++ +    P+ 
Sbjct: 137 GLEDGAQLIIGTPGRILDHLLKGNLNLDRLKILVFDEADRMLSMGFYPDMKQLQRYLPRG 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  MFSAT    +  LA+ + KD V V+++      SD+ +    V    +   +V I+
Sbjct: 197 LQSAMFSATYPGHVKRLAQQFLKDPVFVSLSQSQVHVSDVLHVVYKVPAMQKSRILVKII 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 +AI+FC+T+A V   + VL    + V  +S +L+Q  R   L+ +R  + +  +
Sbjct: 257 EQENPASAIIFCNTKADVHFVSTVLRRFGYDVGEISADLTQAAREEVLEKLRLNKLKFLV 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ +L  V   +   + E  +HR+GRTGRAG  G+++  +    +   E++
Sbjct: 317 ATDVAARGIDIHELSHVFQYQPPQDHEAYVHRTGRTGRAGAAGVAISFVSGMEEIELEQI 376

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR---ILQDPL-FLDSIQGDEKKMVDVLLAKHDPEK 415
            ++ ++ +V +P P+ E +    +QR   +L+  L   D+IQ +  +     + +     
Sbjct: 377 AKKFSIPMVEQPLPADEELETLISQRAVFLLEARLRKADNIQKERMQRFMRTVGELAAND 436

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGR 443
            +   L +            P+   S +
Sbjct: 437 ESRALLAMLVDEFYQGTFHAPLEQPSEK 464


>gi|156405006|ref|XP_001640523.1| predicted protein [Nematostella vectensis]
 gi|156227658|gb|EDO48460.1| predicted protein [Nematostella vectensis]
          Length = 407

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 199/379 (52%), Gaps = 11/379 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    + + +   +   G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 39  MK----LREDLLRGIYAYGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQ 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +         P AL ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 95  AIDTQ------LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRK 148

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 149 LDYGQHIVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 208

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 209 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 268

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I
Sbjct: 269 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVASMHGDMPQKEREAIMKDFRAGQSRVLI 328

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 329 STDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 388

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 389 EQYYSTQIDEMPMNVADLI 407


>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 466

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/452 (26%), Positives = 209/452 (46%), Gaps = 3/452 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ ++GY   + +Q   +   +  +DV+ +AQTG+GKT  F L L   L +  
Sbjct: 13  LSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSK 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                ++   AL + PTRELA Q+   +E       +   V  GGV ++ +   L+ G  
Sbjct: 73  GNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +  S L+  +LDEAD MLD+GF  DI+ ++ + PK R+ L+FS
Sbjct: 133 VLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    + + +++ +EN     +      V    +   + ++++ +  + 
Sbjct: 193 ATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQ 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ TK L        A+ G  SQ  R+ AL   +DG  ++ +ATD+AAR
Sbjct: 253 VLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRT RAG  G ++ ++  +       +       
Sbjct: 313 GIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGIEHVIQQH 372

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +  +         E    R+++        +  +         +H   + +    R    
Sbjct: 373 IERKVIEKFIPANELGESRVIKPLKQGKPPKSAKPHGAGKGRVEHKDGQRSG---RNANG 429

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                 +  P +  S R +   D    K    
Sbjct: 430 NNAGGNKAKPGNDSSRRKKPEYDGTGPKPRRA 461


>gi|260773840|ref|ZP_05882755.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610801|gb|EEX36005.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 420

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 193/386 (50%), Gaps = 4/386 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F ++     + E+L+  G    T +Q   + P L   DVL  AQTG+GKT AFGL L
Sbjct: 5   FKTFLDLGIAPTLVESLNALGIETPTEIQIQAIPPVLAGHDVLAGAQTGTGKTAAFGLPL 64

Query: 59  ASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L A       +S    AL + PTRELA QV   L      + + V V  GG S+  +
Sbjct: 65  LQRLAASKTDVDVSSKDIRALVLVPTRELAQQVFDSLTAYAKGSELKVVVAYGGTSMSVQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++ L+ GA +++ TPGRL DH   K L + +++ +VLDEAD MLD+GF  DI+ +L    
Sbjct: 125 KQHLRGGADVLIATPGRLLDHAHVKSLYLGNVQTLVLDEADRMLDMGFMPDIQRVLRKLN 184

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ L FSAT    I  LA     + + V +   N     +      V    +   +  
Sbjct: 185 RARQTLFFSATFDQKIKALAYRMMHEPIEVQVTPANTTADTVSQMVYPVDKKRKSELLAY 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  +VF  T+       + L     +  +++G+ SQ  R  AL   + G+ R 
Sbjct: 245 LIGSRNWQQVLVFTKTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKAGKIRA 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+  LE V++ +L    E+ +HR GRTGRAG+ G++V ++    +   +
Sbjct: 305 LIATDVAARGIDICQLEQVVNFDLPYKAEDYIHRIGRTGRAGQSGLAVSLMSPQEEPLLQ 364

Query: 358 RLFREANVSVVWEPAPSVE-AIRERD 382
            + R  +  +  E     E ++RE D
Sbjct: 365 AIERLLDQRLPQEWLKGFEPSVREHD 390


>gi|50409637|ref|XP_456892.1| DEHA2A12958p [Debaryomyces hansenii CBS767]
 gi|74659543|sp|Q6BY27|DBP2_DEBHA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49652556|emb|CAG84869.1| DEHA2A12958p [Debaryomyces hansenii]
          Length = 536

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 187/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + + ++G+   TS+Q       L  +D++  A TGSGKT+++ L  
Sbjct: 104 ITSFDEAGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPS 163

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E     + + +      GG    ++ 
Sbjct: 164 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQI 222

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 223 RDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 282

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  L ++Y  D ++V + S     +   + +          DR   
Sbjct: 283 DRQTLMWSATWPKEVQALTRDYLNDPIQVTVGSLELAASHTITQLVEVVTEFEKRDRLIK 342

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+ +    T  L    +  +A+ G+  Q ER   L+  + G+
Sbjct: 343 HLETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGK 402

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G +V     N  +
Sbjct: 403 SPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSK 462

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REAN ++  E
Sbjct: 463 LGGDLCKIMREANQTIPPE 481


>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
 gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
           ATCC 11568]
          Length = 490

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 211/461 (45%), Gaps = 15/461 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +     +A+++ GY   T +QE  +   L  +DVL  AQTG+GKT AF L +
Sbjct: 1   MTEFSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L +   R   A  P A+ +APTRELA QV          T +   + IGGVS+  + 
Sbjct: 61  VDRLASGRAR---ARMPRAVVLAPTRELADQVAESFAKYAKGTRLNWVLLIGGVSMGDQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AALNKGVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRMLDMGFIPDIERIFKLTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAI 235
           +R+ L FSAT+ P IT L + + KD  R+ +A        I              +  A+
Sbjct: 178 RRQTLFFSATMPPEITRLTQQFLKDPTRIEVARPATTADTITQHITRLPSSDPKAKRTAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++     +N IVFC+ ++ V    K L  H F    + G+L Q  R   L   R G  
Sbjct: 238 RALVERGDVQNGIVFCNRKSEVDIVAKSLQVHGFNAAPIHGDLDQSLRMKTLSDFRSGEL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G +  ++     + 
Sbjct: 298 KLLVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRLGEAFMIVTPADDKS 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +++ +      V  P   ++          ++D    DS     +   +        + 
Sbjct: 358 LDKVLKLIKKEPVELPLDDIDFAS-------IKDRPRDDSRSSRGRGRGERSERSRSRKT 410

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           + A  + I      A E + P        R R   ++    
Sbjct: 411 VEAAPVDIESDAPVAAEVVAPHKADEAPRRSRSRKKSEDRA 451


>gi|328717963|ref|XP_001951743.2| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 556

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 193/381 (50%), Gaps = 12/381 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
              P++I + L ++G+V  T++Q       L   +++  A TGSGKT+++ +     +  
Sbjct: 106 SGFPEIIIKELKKQGFVEPTAIQAQGWPIALSGNNLVGIASTGSGKTLSYIVPALIHISH 165

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  + S    P+ L ++PTRELA Q+    +      GV      GG     +  DL  G
Sbjct: 166 QR-KLSRGDGPIVLVLSPTRELAQQIQTVCDDFGDAFGVSSTCLFGGAPKGGQASDLSRG 224

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D     R++LM
Sbjct: 225 VELVIATPGRLLDFLESERTNMCRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLM 284

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILR 240
           +SAT    +  LA+ +  + +++NI S     +    + V V        +  +++  + 
Sbjct: 285 WSATWPKEVKNLAEEFLDEYIQINIGSLTLAANHNIQQIVEVCQEYDKETKLISLLKKIM 344

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+  V   T+ +  H +  V + G+ SQ ER N L+  RD R  + +A
Sbjct: 345 DEDENKTIVFIETKRRVDEITRKIKRHGYSAVCIHGDKSQYERDNVLKDFRDSRYPILVA 404

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ + G +     Q+  ++A  L 
Sbjct: 405 TDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTGRSHKTGTAYTFFTQSNAKQAADLV 464

Query: 360 --FREANVSVVWEPAPSVEAI 378
               EAN ++    +P ++ I
Sbjct: 465 SVLTEANQTI----SPKLKDI 481


>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 494

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 190/380 (50%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILDAVAKQGYEKPSPIQEKAIPAILEGKDVMAAAQTGTGKTAGFTLPLLERL--AG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA QVG  +        +  AV  GGV V+ +   ++ GA 
Sbjct: 66  GCPARSNHVRALVLTPTRELAAQVGESVATYGKNLRISSAVVFGGVKVNPQMLRMRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLHSQNAVKFRDIEILVLDEADRMLDMGFIRDIRKILALLPKERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++   N+    +      V    + N +  +L     K 
Sbjct: 186 ATFSDEIRELAKGLVNDPVEIDVNPRNQTARTVKQWICPVDKKKKPNLLTKLLSERNWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ +  L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANFKAGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L    E+ +HR GRTGRAG +G ++ ++  +  +    + R     
Sbjct: 306 GLDIDQLPQVVNFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFKELVAIERLTQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +  E     +      A ++
Sbjct: 366 LEREIVDGFKPTNALPASKL 385


>gi|320164743|gb|EFW41642.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 594

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 210/407 (51%), Gaps = 21/407 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + EA S  G+   T +Q   +   L  +D++  A+TGSGKT +F L +   LL +   
Sbjct: 155 PSLVEACSRMGFKAPTPIQRQSIPVALTGRDIIGLAETGSGKTASFALPVLQKLLEKPQP 214

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L    HI+
Sbjct: 215 ------LFALILTPTRELAYQISEQFEALGSTIGVKCCVIVGGMDMTTQAIALSKKPHIL 268

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGR+ DH+         LK +++DEAD +L++ F ++++ IL + PK+R   ++SAT
Sbjct: 269 IATPGRIVDHLENTKGY---LKFLIMDEADRILNMDFEEEVDKILKAIPKERNTYLYSAT 325

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           ++  +  L +   ++ V++ +A++ +    +  + + +    +D  +   L      + I
Sbjct: 326 MTSKVAKLQRASLRNPVKIEVATKYQTVGTLVQQYLFIPARFKDCYLTYALNQLAGNSTI 385

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T A+  R   +L    F  + L G+L+Q +R  AL   ++    + +ATDVA+RG+
Sbjct: 386 IFTMTCANAQRVALMLRNLGFPAIPLHGQLTQPKRLGALNKFKEQSRSILVATDVASRGL 445

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q      +R+ +  N  + 
Sbjct: 446 DIPHVDLVINYDIPTHSKDYIHRVGRTARAGRSGRSITMVTQYDVELFQRIEQLINKKM- 504

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                    + E + +++L   + L+     ++  +  +  ++DP  
Sbjct: 505 --------ELYESEEEQVL---MLLERTSEAQRMAITQMRDENDPRN 540


>gi|118639520|gb|ABL09512.1| ATP-dependent RNA helicase [Halobacillus halophilus DSM 2266]
          Length = 395

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 204/387 (52%), Gaps = 10/387 (2%)

Query: 1   MK-IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE +   +   + L++ G    T +Q+  +   +  +DV+  AQTG+GKT AF L 
Sbjct: 1   MKETFEQLGVRKDFIDKLTQEGIGAPTPIQQEAIPALMDGRDVIAQAQTGTGKTFAFLLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +  +        +  A+ + PTRELA+Q+  E+  L  +   V+AV  G     + 
Sbjct: 61  ILQNIRVDEA------SVQAVIVTPTRELALQITEEVRKLKTEDMHVLAVYGGQDVAKQA 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L   AHIV+ TPGR+ DH+R   +++  +K +VLDEAD+ML+ GF  D++ IL  +P
Sbjct: 115 HK-LDGQAHIVIATPGRMLDHLRRGTISLEAVKYMVLDEADQMLEAGFLPDVKDILSQTP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSATI+  +  L K   KD  R+ +  +      I           + + ++ 
Sbjct: 174 EAKQTMLFSATITTQVNQLGKKILKDPRRITVQEKTVTLEGIKQLVYETTDRAKQDTLIE 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I++ H    A++FC T+    +    L  H F+   L G+LSQ +R   ++  RD + + 
Sbjct: 234 IMQEHRPFLALIFCRTKRRARKLNDALLSHGFEADELHGDLSQAKREKVMKRFRDAKIQY 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG KG+++       ++  +
Sbjct: 294 LVATDVAARGLDVEGVTHVFNYDIPQDPESYIHRIGRTGRAGGKGLAITFAAPKDRQALQ 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
            + +     +      ++   +E++++
Sbjct: 354 SIEKSIKQKIERRSLANLSPGKEKESK 380


>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
           mellifera]
          Length = 566

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 186/377 (49%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  + + +  +G+   TS+Q       L  +D++  A TGSGKT+++ L    
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + ++  +      P+AL +APTRELA Q+ +  +     +G+      GG     + RD
Sbjct: 168 HINSQ-PKLGRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARD 226

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 227 LDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 286

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  LA+++ KD  ++N+ S     N     I          ++ + ++
Sbjct: 287 QTLMWSATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLL 346

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A 
Sbjct: 347 KEIMAESENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAP 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +      N   +A
Sbjct: 407 ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKA 466

Query: 357 ERL---FREANVSVVWE 370
             L    +EAN  +  +
Sbjct: 467 NDLIQVLKEANQVINPK 483


>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
 gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
          Length = 444

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 191/390 (48%), Gaps = 10/390 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+ +GY   T++Q+A +   L  +D+L SA TG+GKT AF L    
Sbjct: 6   TFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAIQ 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  + + L   T + +A   GGV+       
Sbjct: 66  HLLDYPRR--KPGAPRILILTPTRELAMQVAEQAQALAKFTQLSIATITGGVAYQNHGEV 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 124 FNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRMLQMGFGQDAEKIAAETRWRK 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +         +      A  +R+      +       +  +   +  I
Sbjct: 184 HTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRRERKKIQQWYYHADNVEHKTKLLARI 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   ++ L +   +   L GE++Q +R+ A+  +++G   V 
Sbjct: 244 ISEFSVERAIVFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNQAINRLKEGVVNVL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ V++ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 304 VATDVAARGIDIDDIDFVLNYDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 363

Query: 359 LFRE----ANVSVVWEPAPSVEAIRERDAQ 384
           + R         ++    P  +A ++ +  
Sbjct: 364 IKRYTEEVLKPRIIEGLEPRTKAPKDGELN 393


>gi|114569874|ref|YP_756554.1| DEAD/DEAH box helicase domain-containing protein [Maricaulis maris
           MCS10]
 gi|114340336|gb|ABI65616.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
          Length = 498

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 212/492 (43%), Gaps = 30/492 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA+ E GY   T +Q   +   L  +DVL  AQTG+GKT +F L L   L   +
Sbjct: 8   LSPKLLEAIQEAGYSEPTPIQAGAIPAALAGRDVLGIAQTGTGKTASFTLPLIERL---S 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  P +L IAPTRELA Q     E       + +A+ IGGV+   +   L  GA 
Sbjct: 65  RGRAKARMPRSLIIAPTRELAAQCAENFETYSKGQKLSMALLIGGVAFGPQEEILNKGAD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML--M 184
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  D+E I    P   R     
Sbjct: 125 VLIATPGRLLDHFGRGKLLMTGVQMLVVDEADRMLDMGFIPDLEKIFSLVPPAPRRQTLF 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRY 241
           FSAT+   I +L   + +D  RV ++   +  ++I    +     +   +  A+   +  
Sbjct: 185 FSATMPKEIQSLVDRFLRDPERVEVSRPAQTGANITQLMIRLTDNSAKAKRLALRQAMSR 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G KN I+F + +  V    + L  H F    + G+L Q  R+  L   + G  R  +A+
Sbjct: 245 EGVKNGIIFSNRKRDVDVVARSLQRHGFSAAPIHGDLDQSARTATLADFKAGTLRFLVAS 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+PD+  V + ++  + ++ +HR GRTGRAG+ G SV +     ++    + +
Sbjct: 305 DVAARGLDIPDVSHVFNYDMPHHADDYVHRIGRTGRAGKSGESVTIFAPGDEKSLAAVLK 364

Query: 362 EANVSVVWE-----------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                +               A S +A  E  A +           +   K        K
Sbjct: 365 LIKEEIPELVLDGNGDAPASKASSPDAKSEAAAPKTASTRTRTRKPRVSRKSAEAEAPPK 424

Query: 411 H-----DPEKIAAGF-----LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
                 +PE   A       ++  +    A E  +P    S R       R       S 
Sbjct: 425 TPSPAAEPETADAAIVDTAPVKQAQDTETARENTSPSKRQSNRRSGSKRDRGQDKER-ST 483

Query: 461 DNFKGSSWFSLS 472
             F       ++
Sbjct: 484 IGFGDHVPSFMN 495


>gi|164655646|ref|XP_001728952.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
 gi|159102840|gb|EDP41738.1| hypothetical protein MGL_3946 [Malassezia globosa CBS 7966]
          Length = 396

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 196/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +   +    +   +++Q+  + P LR +DV+  AQ+G+GKT  F +A+  
Sbjct: 24  TFDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPILRGRDVIAQAQSGTGKTATFSIAMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+              AL ++PTRELA Q+   +  L     V    CIGG SV  + R 
Sbjct: 84  TIDIS------LRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDIRK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+ D IR + L   ++K +++DE+DE+L++GF+D I  I    P   
Sbjct: 138 LEYGQHIVSGTPGRVFDMIRRRHLRTKNIKMLIMDESDELLNMGFKDQIYDIYRYLPPAT 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 198 QVVLVSATLPHDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E+ FQV ++ GE+ Q+ER   +   R G +RV I
Sbjct: 258 DTLTITQAVIFCNTRRKVDWLTDRMRENNFQVSSMHGEMQQKERDAIMGEFRQGGSRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+ ++ LVI+ +L +N EN +HR GR+GR GRKG+++  +     +    +
Sbjct: 318 TTDVWARGIDVQNVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTTEDVKILRDI 377

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 378 EQYYSTQIDEMPM 390


>gi|73969105|ref|XP_860607.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 10 [Canis
           familiaris]
          Length = 655

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/377 (26%), Positives = 172/377 (45%), Gaps = 13/377 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--- 182
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     +     
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDTL 276

Query: 183 ---LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              +  +              +          E   + +I     +   S++D+ ++ ++
Sbjct: 277 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 336

Query: 240 RYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               A+     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A 
Sbjct: 337 EEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A
Sbjct: 397 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 456

Query: 357 ERLFR---EANVSVVWE 370
             L +   EAN ++  +
Sbjct: 457 RELIKVLEEANQAINPK 473


>gi|329769092|ref|ZP_08260513.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
 gi|328839438|gb|EGF89015.1| hypothetical protein HMPREF0433_00277 [Gemella sanguinis M325]
          Length = 486

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/425 (31%), Positives = 218/425 (51%), Gaps = 10/425 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +   + + E+LS+  + + T +Q   +       D+L  AQTGSGKT AFG+ +
Sbjct: 1   MTTFEELGVSREVVESLSKMNFQSPTGIQTETIPYVFSGIDILAQAQTGSGKTGAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    D         +L +APTRELA QVG +L  +    G+ V++  GG S+ R+ 
Sbjct: 61  VDIVKRSED-------LQSLVLAPTRELAQQVGEQLRLMARAKGLKVSIIFGGTSIERQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    IVVGTPGR+ DHI  + L +  L  +VLDEADEML++GF +D+ FIL     
Sbjct: 114 QDLKKRPQIVVGTPGRVIDHINRRTLKLDKLTHLVLDEADEMLNMGFIEDVRFILSKITS 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  L+K++ KD   +   S+   + DI   A +   +++   +V  
Sbjct: 174 NHQTLLFSATMPKTIMELSKDFMKDYKLIKTMSDEDLNPDIKEYATIARENEKLETLVGF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF  T+  V   +  L    +    L G+++Q +R   L+  ++   ++ 
Sbjct: 234 LDVQNPNLAIVFGRTKRRVDELSSALIAKGYLAEGLHGDITQSKRLEILRKFKNNSLQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V + ++  + E+  HR GRTGRAG+ G++V  +        + 
Sbjct: 294 VATDVAARGIDISDVTHVYNFDIPQDTESYTHRIGRTGRAGKSGVAVTFLNPIEMPYLKD 353

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +       +      + E +++    R+ ++ +  L     +   + + LLA+ + EKI 
Sbjct: 354 IENSRGERMKMLRPYTKEEVKKARHNRLFEEVVSELSDNHVELNSLANKLLAESNAEKII 413

Query: 418 AGFLR 422
              L 
Sbjct: 414 TVLLN 418


>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 441

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 189/373 (50%), Gaps = 2/373 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + +  AL + GY   T +Q   +   L+  D+L +AQTG+GKT  F L +
Sbjct: 4   VSSFADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L            P AL + PTRELA QV   +        +      GGV+++ + 
Sbjct: 64  LQRLTTGQTPERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMNPQI 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    IVV TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  ++   PK
Sbjct: 124 KALRGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMPK 183

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ LMFSAT S  I TLA +       V++A  N     +     LV  S +   + ++
Sbjct: 184 QRQNLMFSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELLSHL 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R +     +VF  T+   +R  + L +      A+ G  SQ  R+ AL+  + G   V 
Sbjct: 244 IRSNDWGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAVPVL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++     +  + 
Sbjct: 304 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKLLKG 363

Query: 359 LFREANVSVVWEP 371
           + R     +    
Sbjct: 364 IERLIQRPIERIE 376


>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
 gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
          Length = 412

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 194/364 (53%), Gaps = 3/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+S+ GY   T++Q A + P L+ KD++ SAQTG+GKT AF L L  TLL   
Sbjct: 8   LSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLETLL--- 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + + +P  L I PTRELA Q+    +              GGV +  + R L+ G  
Sbjct: 65  RKPNSSKSPKFLIITPTRELAAQIEASAQTYSKYISCRTLAVFGGVKIGPQIRQLKQGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      +++  +  +VLDEAD MLD+GF   I  I    P  ++ LMFS
Sbjct: 125 VLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRMLDMGFIPAIRRIQKLLPATKQTLMFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+ Y +  V V++  +N     +D     V    +   +  +L  +G   
Sbjct: 185 ATYSDEIRTLAQTYLRRPVEVSVTPKNAAAHTVDQLIYPVDKKQKSAVLQYLLNNYGWVQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L +   +  A+ G  SQ +R+ AL   + G+  V +ATD+A+R
Sbjct: 245 VLVFSRTKHGANKLVRELDKANIRAAAIHGNRSQSQRTKALADFKSGKIAVLVATDIASR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L +VI+ +L + PE+ +HR GRTGRAG  G ++ ++  +  ++   + R  +  
Sbjct: 305 GIDIAQLPVVINFDLPNVPEDYVHRIGRTGRAGSNGRAISLVCADEVKQLRDIERVISRQ 364

Query: 367 VVWE 370
           +  E
Sbjct: 365 LPRE 368


>gi|326479821|gb|EGE03831.1| ATP-dependent RNA helicase DBP2 [Trichophyton equinum CBS 127.97]
          Length = 536

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 183/376 (48%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T +Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 119 VQTFDEAGFPQYVMSEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 178

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 179 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQI 237

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 238 RDLTRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 297

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++ +D ++V I S+    N + + I          DR   
Sbjct: 298 DRQTCMWSATWPKDVRQLANDFLQDYIQVYIGSQALSANHRITQIVEVVSEFEKRDRMIK 357

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 358 HLERIMEDKKSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 417

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG  G ++ +       
Sbjct: 418 SPIMVATDVASRGIDVRDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITLFTTENAK 477

Query: 352 MQRRAERLFREANVSV 367
             R   ++  E+   +
Sbjct: 478 QARDLVKILTESKQQI 493


>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 652

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 189/378 (50%), Gaps = 12/378 (3%)

Query: 1   MKIFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  FE      P  +   + + G+   T++Q       L  +D++  AQTGSGKT+A+ L
Sbjct: 115 MPSFEFNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVL 174

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                +  +  R   +  P+AL +APTRELA Q+ +      ++  V      GG     
Sbjct: 175 PAVVHINNQ-PRLEHSDGPIALILAPTRELAQQIQQVANEFGSQIQVRNTCIFGGAPKQP 233

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+   
Sbjct: 234 QSRDLERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRMLDMGFEPQIRKIIKQI 293

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRD 232
              R++LM+SAT    +  LA+ +  + +++NI S     +    + V V       ++ 
Sbjct: 294 RPDRQVLMWSATWPKEVRNLAEEFLDNYIQINIGSLTLSANHNILQIVDVCEEAEKTNKL 353

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           N ++  +        I+F  T+  V   T+ ++   ++  A+ G+ SQQER   L   R+
Sbjct: 354 NKLLGEISSEKDTKTIIFVETKKRVDEITRSISRQGWRACAIHGDKSQQERDYVLTSFRN 413

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR+ + +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +     
Sbjct: 414 GRSSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTTAN 473

Query: 353 QRRAERL---FREANVSV 367
             +A  L    REA   +
Sbjct: 474 ANKANDLIQVLREAKQVI 491


>gi|229592757|ref|YP_002874876.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229364623|emb|CAY52530.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 444

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 181/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F + L   L  E  +
Sbjct: 10  EPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  SA  AL + PTRELA QV   +        +      GGVS++ +   L+ G  I+
Sbjct: 70  VAANSA-RALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDIL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   L ++ L+ +VLDEAD MLDLGF +++  I    PKKR+ L+FSAT
Sbjct: 129 VATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    +    V+++R    K  +
Sbjct: 189 FSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMRKGRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V      L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEMLTRQTLT 368

Query: 369 WEPAPSVE 376
            +  P  E
Sbjct: 369 RKMEPDFE 376


>gi|255079166|ref|XP_002503163.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226518429|gb|ACO64421.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 450

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 123/409 (30%), Positives = 212/409 (51%), Gaps = 11/409 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + EA ++ G+   + +Q   +   L+ KDV+  AQTGSGKT AF L +   LL +   
Sbjct: 24  EELAEAAADLGWKAPSEIQAQSIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQA 83

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F       AL ++PTRELA+Q+  + E L A  GV  AV +GG+ +  +   L    H+V
Sbjct: 84  F------FALVLSPTRELAIQIAEQFEALGAGIGVKTAVLVGGIDMMAQSIQLGKRPHVV 137

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VGTPGR+ DH+       +  L+ + LDEAD +L+L F  +I+ IL   P+ RR  +FSA
Sbjct: 138 VGTPGRVVDHLTNTKGFTLKQLQVLCLDEADRLLNLDFEQEIDQILKVVPRDRRTQLFSA 197

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ V+V ++++      +    + +    +D  +  +     +   
Sbjct: 198 TMTSKVAKLQRACLRNPVKVEVSAKYSTVDSLKQNYLFIPAKHKDCYVNYLFNELSSSTM 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T     +   V     F  + + G++SQ +R  AL   + G   + +ATDVA+RG
Sbjct: 258 MVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRIGALNKFKAGERNILVATDVASRG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANV 365
           +D+P +++VI+ ++  N ++ +HR GRT RAGR G+++ ++ Q      +++ R  +  +
Sbjct: 318 LDIPAVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAITMVTQYDVELYQKIERLIQKKL 377

Query: 366 SVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                P  +V  + ER  +AQRI Q  +     +G  KK       + D
Sbjct: 378 DAYDAPEEAVLLMNERVNEAQRIAQQQMREADAKGGGKKRNRDGDGEED 426


>gi|325204407|gb|ADY99860.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240355]
          Length = 457

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 222/406 (54%), Gaps = 5/406 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           + E    +E    +  ++    P   ++ +  ++   +   A+ + 
Sbjct: 373 LIE---RIEGFEPQWWEQGGAKPEKTETSEPRQRNRYESARAQREK 415


>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
 gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
          Length = 416

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  K+   ++     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|91206662|sp|Q4WEB4|FAL1_ASPFU RecName: Full=ATP-dependent RNA helicase fal1
          Length = 398

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F + +  
Sbjct: 25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSIGILQ 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 85  VID------TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 139 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 199 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 259 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 378

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 379 ELYYSTQIDEMPM 391


>gi|254500508|ref|ZP_05112659.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222436579|gb|EEE43258.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 480

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 192/366 (52%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+   GY + T++Q   +   L  +DVL  AQTG+GKT +F L + + L    
Sbjct: 8   LSEKVLAAVDAAGYKDPTAIQAGAIPQVLERRDVLGIAQTGTGKTASFTLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   + + L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVQENFERYGTNHKLNVALLIGGVSFAEQDKKLDRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHG 243
           AT+ P I  L + + ++  R+ +A  +    ++  +           R      +     
Sbjct: 185 ATMPPEIQRLTETFLQNPARIEVAPTSSTAENVTQQLKAAGGKDYDKRVALRELLEGAED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAIVFC+ +  +S   + L  H + V AL G++ Q+ R   L+  R G  ++ +A+DV
Sbjct: 245 LQNAIVFCNRKRDISTLFRSLERHEYNVGALHGDMDQRTRMMMLENFRKGAIKLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++  N E+ +HR GRTGRAGR G +  ++ ++ Q+    +    
Sbjct: 305 AARGLDIPEVSHVFNYDVPINAEDYVHRIGRTGRAGRSGTAYTLVTESDQKYLRAIEELT 364

Query: 364 NVSVVW 369
           N S+ W
Sbjct: 365 NQSIEW 370


>gi|125775187|ref|XP_001358845.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|195144826|ref|XP_002013397.1| GL23429 [Drosophila persimilis]
 gi|54638586|gb|EAL27988.1| GA20384 [Drosophila pseudoobscura pseudoobscura]
 gi|194102340|gb|EDW24383.1| GL23429 [Drosophila persimilis]
          Length = 399

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 199/374 (53%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V+  VCIGG ++  + R L  G 
Sbjct: 90  ----TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVLCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 385

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 386 TQIDEMPMNVADLI 399


>gi|298695355|gb|ADI98577.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 487

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/456 (28%), Positives = 224/456 (49%), Gaps = 16/456 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q+  +   L+  D+L  AQTG+GKT AFG+ L   ++ +           +
Sbjct: 1   MGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQS 53

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+QV  +L       GV V    GG+ + R+ + L+ G  IVVGTPGR+ D
Sbjct: 54  LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVID 113

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-FSATISPAITTL 196
           H+  + L    +  ++LDEADEM+++GF DD+ FI+D  P  +R  M FSAT+  AI  L
Sbjct: 114 HLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQAL 173

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            + + K    +   +       I+    +V   ++ +   N L  H  + AIVF  T+  
Sbjct: 174 VQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRR 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAARG+D+  +  V
Sbjct: 234 VDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            + ++  + E+  HR GRTGRAG++G++V  +         ++       +     P  +
Sbjct: 294 YNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRK 353

Query: 377 AI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
            +   RE D +  +++ +  +S +   K++   LL +++   + A  L      L    +
Sbjct: 354 EVLQAREDDIKEKVENWMSKES-ESRLKRISTELLNEYNDVDLVAALL----QELVEAND 408

Query: 434 ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
              V L   +   R        G  +R++ +G+  F
Sbjct: 409 EVEVQLTFEKPLSRKGRNGKPSGSRNRNSKRGNPKF 444


>gi|224437667|ref|ZP_03658614.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313144114|ref|ZP_07806307.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
 gi|313129145|gb|EFR46762.1| ATP-dependent RNA helicase DeaD [Helicobacter cinaedi CCUG 18818]
          Length = 513

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/484 (27%), Positives = 226/484 (46%), Gaps = 11/484 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE   +   + + + E G+ + + VQ   +   L+ KD++  AQTG+GKT AF + + 
Sbjct: 18  QSFETFGLKDFVLKGIKEAGFSSPSPVQAQSIPIVLQGKDLIAQAQTGTGKTAAFSIPIL 77

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L       S      AL I PTRELA+Q+  E+  L     +      GG S+ R+  
Sbjct: 78  NAL-------SRNKEIEALVITPTRELAMQISEEVLKLGRFGRIKTICMYGGQSIKRQCD 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    +++ TPGRL DH++   +     K VVLDE+DEMLD+GF DDIE I    P  
Sbjct: 131 LLEKKPKVMIATPGRLLDHLQNGRIENFAPKVVVLDESDEMLDMGFLDDIEEIFKFLPNT 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  LA         V I   +  + DI+ +  ++   +RD AIV +L
Sbjct: 191 HQTLLFSATMPEPIKNLALKILDKPEFVKITPTDITNKDIEQQYYIINEGERDEAIVRLL 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+F  T+         L    F+ +AL G++ Q +R  A++  ++    + +
Sbjct: 251 ETQNPTKSIIFTRTKKEADALATRLVTKGFKAMALHGDMEQWDRRTAIKAFKENEIELLV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ D+  V +  +  NPE+ +HR GRTGRAG+KG+++ +      +   ++
Sbjct: 311 ATDVASRGLDISDVSHVFNYHIPLNPESYVHRIGRTGRAGKKGVAITLATPLEYKDLSKI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      + E   +  +Q I    +   S+   EK    V   +   + IA  
Sbjct: 371 KQITKAKLTLCEI-TQEYSDDAFSQEISHAKVNDKSVAIYEKLKDKVDTTQLCLKLIALH 429

Query: 420 FLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             +  +  +  + E+I  +   S     + + ++ K    ++   +     S   G    
Sbjct: 430 LEKSKQNKIGLSKEQIAQLESQSESKEQKHNKKSSKFSHNAKSKPQSQRNNSRGNGRDMG 489

Query: 479 AEAR 482
              R
Sbjct: 490 GNKR 493


>gi|194744201|ref|XP_001954583.1| GF18341 [Drosophila ananassae]
 gi|194903996|ref|XP_001980981.1| GG24917 [Drosophila erecta]
 gi|195055753|ref|XP_001994777.1| GH14195 [Drosophila grimshawi]
 gi|195110945|ref|XP_002000040.1| GI24868 [Drosophila mojavensis]
 gi|195391782|ref|XP_002054539.1| GJ24512 [Drosophila virilis]
 gi|195499068|ref|XP_002096791.1| GE25867 [Drosophila yakuba]
 gi|190627620|gb|EDV43144.1| GF18341 [Drosophila ananassae]
 gi|190652684|gb|EDV49939.1| GG24917 [Drosophila erecta]
 gi|193892540|gb|EDV91406.1| GH14195 [Drosophila grimshawi]
 gi|193916634|gb|EDW15501.1| GI24868 [Drosophila mojavensis]
 gi|194152625|gb|EDW68059.1| GJ24512 [Drosophila virilis]
 gi|194182892|gb|EDW96503.1| GE25867 [Drosophila yakuba]
          Length = 399

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 90  ----TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 385

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 386 TQIDEMPMNVADLI 399


>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 188/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFFDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   V   + +R    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPAEV-KLAVSRPADKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +   P P 
Sbjct: 357 KQIENFLERDIYKIPVPE 374


>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 489

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 196/372 (52%), Gaps = 3/372 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + +  A+ ++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L 
Sbjct: 1   MSFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N   + ++A  AL + PTRELA QV   +        +   V  GGV+++ +  
Sbjct: 61  HRLSRGNP--ARSNAVRALVLTPTRELAAQVAESVTTYGKYLPLKSVVVFGGVNINPQML 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ GA ++V TPGRL D +    L+   L+ ++LDEAD MLD+GF  DI  I++  PK 
Sbjct: 119 AMRKGADVLVATPGRLLDLVSQNALHFRQLEVLILDEADRMLDMGFIRDIRKIINMLPKD 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT S  I TLAK    + V++++A  N     I      V    +   + +++
Sbjct: 179 RQTLMFSATFSDEIRTLAKGLLNEPVQIDVAPRNTTAETIKQTICPVDKGRKPALLCHLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +++  +  +VF  T+   ++    L     Q  A+ G  SQ  R+ AL   +DG  RV +
Sbjct: 239 KHNNWQQVLVFMRTKHGANKLVTQLETAGIQAAAIHGNKSQGARTRALSGFKDGSVRVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ EL +  E+ +HR GRTGRAG +G ++ ++  + Q     +
Sbjct: 299 ATDIAARGIDIAQLPQVVNYELPNIAEDYVHRIGRTGRAGMEGHAISLVSADEQPLLVDV 358

Query: 360 FREANVSVVWEP 371
            +     +  E 
Sbjct: 359 EKLIKQILPREE 370


>gi|251812202|ref|ZP_04826675.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251804299|gb|EES56956.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 528

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 230/475 (48%), Gaps = 15/475 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +       + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L
Sbjct: 20  LQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +           +L +APTRELA+QV  +L        V V    GG+ + R+ 
Sbjct: 80  IEKVVGQQ-------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQI 132

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P 
Sbjct: 133 KALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPA 192

Query: 179 KRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R  M FSAT+  AI  L + + K    +   +       ID    +V   ++ +   N
Sbjct: 193 EQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTN 252

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  H  + AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  +
Sbjct: 253 FLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDI 312

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         
Sbjct: 313 LVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIR 372

Query: 358 RLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++    N  +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  
Sbjct: 373 QIEDVNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSREN-EPRLQRISSELLKEYDST 431

Query: 415 KIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           ++ A  L+ +  A      ++T    ++ ++R                 F   + 
Sbjct: 432 ELVASLLQELVEANDEVEVQLTFEKPLARKNRSNKGGSRRSNHKRGNGKFDNKNR 486


>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
          Length = 1201

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 188/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +   GY+  T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 111 IQYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPA 170

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +  R S    P+ L +APTRELA Q+            V      GG     + 
Sbjct: 171 IVHIIHQ-PRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAAVRNTCIFGGAPKGPQA 229

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 230 HDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 289

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R++LM+SAT    +  LA+++  D + +NI S     +    + + V        +   
Sbjct: 290 DRQVLMWSATWPKEVRALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKDLKLYR 349

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +    +Q V++ G+ +QQER + LQ  R+G+
Sbjct: 350 LLQEIGTEKENKTIIFVETKRKVDDITKNIRREGWQAVSIHGDKNQQERDHVLQEFRNGK 409

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM+
Sbjct: 410 APILVATDVAARGLDVDDVKYVINFDFPSSSEDYIHRIGRTGRKRQTGTAYAFFTTHNMK 469

Query: 354 R--RAERLFREANVSV 367
                  + REA  +V
Sbjct: 470 HAGDLIEVLREAGQNV 485



 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 180/364 (49%), Gaps = 7/364 (1%)

Query: 4    FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE    P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 707  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +  +  R S    P+AL +APTRELA Q+ +        + V      GG     + RDL
Sbjct: 767  INHQ-PRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDL 825

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            + G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+
Sbjct: 826  ERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQ 885

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
             LM+SAT    +  LA+ +  D +++NI S     +    + V V        +   ++ 
Sbjct: 886  TLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLE 945

Query: 238  ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +        I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ +
Sbjct: 946  EISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAI 1005

Query: 298  CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A 
Sbjct: 1006 LVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAG 1065

Query: 358  RLFR 361
             L +
Sbjct: 1066 DLIQ 1069


>gi|294934696|ref|XP_002781195.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239891530|gb|EER12990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 584

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 187/372 (50%), Gaps = 12/372 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P+V+ +   + GY   T++Q+      L  +D++  AQTGSGKTVAF L  
Sbjct: 173 IRTFEQGQFPEVLMKEFEKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPA 232

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L + PTRELA+QV  E        G++     GGV  + + 
Sbjct: 233 IIHVNAQAP-LKHGDGPVVLVLVPTRELAMQVQAEATRFGKMAGLMNTAIFGGVPRYNQA 291

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 292 NDLRRGVEICIATPGRLLDFLETGVTNLKRVTYLVLDEADRMLDMGFEPQIRRIVSQIRP 351

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+  M+SAT    + ++A+++ ++         ++ + + D+  R  +V+  D+     
Sbjct: 352 DRQTTMWSATWPKEVQSMARDFCREEPIRLTVGNTQLQANPDVKQRVEVVSEMDKRQMFF 411

Query: 237 NILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + L+    K    IVF  T+      T+ +  + F   ++ G+  Q+ER   L   + GR
Sbjct: 412 DWLKETYPKGSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGR 471

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
             V +ATDVA RG+D+ ++E V++ ++    E+ +HR GRTGRAG  G S+  I  +   
Sbjct: 472 CNVLVATDVAQRGLDIKNVEWVVNYDMPKTVEDYVHRIGRTGRAGAVGNSLTFITNDTHT 531

Query: 354 ----RRAERLFR 361
               R A+ + +
Sbjct: 532 PDRVRMAKDIVK 543


>gi|325134358|gb|EGC57003.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M13399]
 gi|325144657|gb|EGC66955.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240013]
 gi|325205823|gb|ADZ01276.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M04-240196]
          Length = 457

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/443 (30%), Positives = 227/443 (51%), Gaps = 11/443 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVE-------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + E     E         +    +  +++P   +  +    +       +       A  
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKTE--MREPRQRNRYESARAQREKNTRPETTANDAGAAC 430

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
            +I      +  E    +L+  R
Sbjct: 431 GKIAGRSRRSRREHRTCALLQPR 453


>gi|322515347|ref|ZP_08068343.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
 gi|322118634|gb|EFX90856.1| ATP-dependent RNA helicase DeaD [Actinobacillus ureae ATCC 25976]
          Length = 445

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 10/390 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   T+VQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  NLLDYPRR--KLGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       L  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNLEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG   V 
Sbjct: 247 ISTMKMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRVGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFRE----ANVSVVWEPAPSVEAIRERDAQ 384
           + R         V+    P  +A ++ +  
Sbjct: 367 IKRYTEELLKARVIEGLEPRTKAPKDGELN 396


>gi|153839129|ref|ZP_01991796.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260902834|ref|ZP_05911229.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149747384|gb|EDM58352.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308107831|gb|EFO45371.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 430

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 205/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL +APTRELA Q+   ++     T + V    GG  +  +   L+NG
Sbjct: 66  SGRTASRKTA-RALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQISALENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++L+ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + ++ +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 435

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 119/399 (29%), Positives = 194/399 (48%), Gaps = 2/399 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++ +GY + + +Q   +   L  KD++ +AQTG+GKT  F L L   L    
Sbjct: 8   LSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLELL--NR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +  +   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ G  
Sbjct: 66  GTHARGNQARALVLTPTRELAAQVAASVVDYGKDLPLRSAVVFGGVGINPQMIKLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLYNQNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V V+++  N     ++     V  + +  A++ +++ +  + 
Sbjct: 186 ATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQFVCPVDKNQKTPALIRMIKDNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G+ R  +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLADIERFTKQI 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +  +     E +      R+   P+     +    +  D
Sbjct: 366 IPRKGIEGFEPVHALPESRLDSRPIKPKKPKKPRVQHRD 404


>gi|85103782|ref|XP_961600.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
 gi|74625334|sp|Q9P735|FAL1_NEUCR RecName: Full=ATP-dependent RNA helicase fal-1
 gi|16415977|emb|CAB88547.2| probable translation initiation factor eIF-4A [Neurospora crassa]
 gi|28923147|gb|EAA32364.1| eukaryotic initiation factor 4A-12 [Neurospora crassa OR74A]
          Length = 400

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 27  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 87  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 141 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPAT 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 201 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 261 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 380

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 381 ELYYSTQIDEMPMNVADLI 399


>gi|212710675|ref|ZP_03318803.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
 gi|212686756|gb|EEB46284.1| hypothetical protein PROVALCAL_01741 [Providencia alcalifaciens DSM
           30120]
          Length = 445

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/387 (28%), Positives = 189/387 (48%), Gaps = 4/387 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL+ +GY   T++QEA +   +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDESLITALTNKGYERPTAIQEAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + + L A   + VA   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQAKELCAHNHLDVATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAHDIETIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +    A     +   + ++L+   
Sbjct: 188 SATLEGEAIRDFAERLLEDPIEIDAEPSRRERKKIQQFYYRADTLEHKTALLCHLLKQED 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +IVF   R  V    + L +   +   L GE+ Q +R+ A++ +  G+ +V +ATDV
Sbjct: 248 VTKSIVFVRKRERVREVVQWLRDAGIEPCYLEGEMVQAKRNEAVRRLVTGQVKVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V + +L    +  LHR GRTGRAGRKG ++ ++  +      ++ R  
Sbjct: 308 ASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTALSLVEAHDFPLLGKITRYI 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S+    +  ++ +L  P
Sbjct: 368 EDPIKIRVVDSLRPTTKAPSEAMLNKP 394


>gi|153835022|ref|ZP_01987689.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148868543|gb|EDL67640.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 430

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 205/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLE 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+ G
Sbjct: 66  SGRSASRKTA-RALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALEGG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++++ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFIHAVRKIMMDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|126138430|ref|XP_001385738.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
 gi|146286118|sp|A3LWX3|DHH1_PICST RecName: Full=ATP-dependent RNA helicase DHH1
 gi|126093016|gb|ABN67709.1| RNA helicase of DEAD box family [Scheffersomyces stipitis CBS 6054]
          Length = 509

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 187/412 (45%), Gaps = 9/412 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +DVL  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG S+  +  
Sbjct: 90  QQIKPKLNKI------QALILVPTRELALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDIL 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  H++VGTPGR+ D       ++S     V+DEAD+ML   F+  IE IL+  PK 
Sbjct: 144 RLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKMLSREFKGIIEQILEFFPKN 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGI-TQYYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +E    +   PA     +   D +  +  P  ++ +    +K+      ++
Sbjct: 383 EQELGTEIKPIPATIDRKLYVADNEDAIPKPFKIEQLPKGNEKVHTRAGYEY 434


>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
          Length = 408

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 195/379 (51%), Gaps = 5/379 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   + +A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF +   
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P  A   L + PTRELA Q+  + E L  +T + + V  GG++    + 
Sbjct: 61  QYLL-DFPRRDPGFA-RVLVMTPTRELAYQIHEQCELLAKRTNLKIGVVTGGINYGTHKE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    I++ TPGRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +
Sbjct: 119 IFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNR 178

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           R+  +FSAT    ++   A+    D   +   S  ++ + I     L      +   +VN
Sbjct: 179 RQCFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVN 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AIVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+
Sbjct: 239 TLNGPDVTKAIVFVKTRERLETLIGELTTNDVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VI+ +L    +  +HR GRTGRAG+KG+++ ++  +      
Sbjct: 299 LVATDVAARGIDVADISHVINFDLPRTADIYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 358 RLFREANVSVVWEPAPSVE 376
           ++ R     +       +E
Sbjct: 359 KIERYIEQKLKRRVIKGLE 377


>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
 gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
          Length = 551

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 210/471 (44%), Gaps = 23/471 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   +    A+   GY + T VQE  +   L  +DV+ +A+TG+GKT AF L   
Sbjct: 3   KTFHDLGLSEKALAAVDLLGYTDPTPVQEQAIPAVLAGRDVIAAAKTGTGKTAAFSLPTM 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L            PL L + PTRELA+Q+      +  ++G  V   +GGVS + +  
Sbjct: 63  DRLGHARH----GQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSYNPQID 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++ TPGRL D +     +++ ++ +VLDEAD MLD+GF  D+  I+ + P +
Sbjct: 119 SLRRGTDVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIVAACPTQ 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSATI  AI     +   + V V IA        I+   + V    +++ ++ +L
Sbjct: 179 RQTLLFSATIDSAIEDNMAHLLNNPVFVEIAHRGETADTIEQYRIPVDHRHKNDLLIALL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    IVF  TR  V    + L +  F V  +  + SQ +R  A++ +  G+  + +
Sbjct: 239 NERGGTRIIVFARTRHRVDTCVRKLRKAGFAVEPIHSDRSQNQRKRAIEALEAGKCDILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARGID+P++  V++ ++    E+ +HR GRTGRAG  G ++  +    +     +
Sbjct: 299 ATDVLARGIDIPNVNYVVNLDMPDQVEDYVHRIGRTGRAGEAGCAISFVTPENKAILRDI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +     +      S ++                 +             A++DPE +A  
Sbjct: 359 QKLIGKDIPEMSVESFDS----------------SASDNALAAKATRANAQNDPE-LATA 401

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                          +     +   R     R  K   G++ N   S    
Sbjct: 402 AREDKSRKKAKSSRSSRREHNTEDQRAGGQQRGHKNPRGNKSNRNNSERHF 452


>gi|290562842|ref|NP_001166829.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
 gi|95102744|gb|ABF51313.1| DEAD box polypeptide 5 isoform 2 [Bombyx mori]
          Length = 512

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 195/392 (49%), Gaps = 16/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + +   GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 79  IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 138

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+ +        + V      GG     + 
Sbjct: 139 IVHINNQPP-IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 197

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 198 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 257

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA++Y  D +++NI S     + +I     +    +++N    
Sbjct: 258 DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 317

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+      ++ +  + +  V + G+ +QQER   L   ++
Sbjct: 318 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 377

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S      + 
Sbjct: 378 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 437

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRER 381
            R+A+ L    +EAN  +    +P ++++ +R
Sbjct: 438 SRQAKDLVSVLQEANQII----SPQLQSMADR 465


>gi|325132396|gb|EGC55089.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M6190]
 gi|325138385|gb|EGC60953.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           ES14902]
 gi|325142616|gb|EGC65008.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           961-5945]
 gi|325201879|gb|ADY97333.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           M01-240149]
 gi|325208368|gb|ADZ03820.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
           NZ-05/33]
          Length = 457

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 227/443 (51%), Gaps = 11/443 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVE-------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + E     E         +    +  +++P   +  +    +       +       A  
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKTE--MREPRQRNRYESARAQREKNTRPETTANDAGAAC 430

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
            +I      +  E    +L+  R
Sbjct: 431 GKIAGRSRRSRREHRTCALLQPR 453


>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
 gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
          Length = 421

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
 gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
          Length = 423

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+  S  R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAESPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|169860811|ref|XP_001837040.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
 gi|116501762|gb|EAU84657.1| ATP-dependent RNA helicase FAL1 [Coprinopsis cinerea okayama7#130]
          Length = 396

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 196/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++   + +   +    +   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++
Sbjct: 22  VSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIIQGRDVIAQAQSGTGKTATFSISI 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++              AL ++PTRELA Q+   +  L     V    CIGG S+  + 
Sbjct: 82  LQSIDVT------VRETQALVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSIGEDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GF+D I  +    P 
Sbjct: 136 RKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 196 ATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T+ +    F V ++ GE+ Q+ER   +   R G +RV
Sbjct: 256 LYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRSGTSRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +     R   
Sbjct: 316 LITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVEDVRILR 375

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +     +   P  + E I
Sbjct: 376 DIEQFYGTQIDEMPVNAAELI 396


>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 442

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 181/372 (48%), Gaps = 6/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+G+   T++Q   +   L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  MQHLIDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIV 236
           +++ L+FSAT+             +      A  +++      +    A     +   +V
Sbjct: 181 RKQTLLFSATLEGDNIKDFAERLLNDPVAVEADPSQRERKKIQQWYYRADDLEHKTKLLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+      +IVF   R  +      L E   +   L GE+ Q +R+ AL+ + DGR  
Sbjct: 241 HLLKQPEVTRSIVFVRKRERLHELVTWLHEAGIRCSYLEGEMVQAKRNEALKRLNDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ D+  V + ++    +  LHR GRT RAGRKG+++ ++  +     
Sbjct: 301 VLVATDVAARGIDIEDVSHVFNYDMPRTADIYLHRIGRTARAGRKGIALSLVEAHDHVLL 360

Query: 357 ERLFREANVSVV 368
            ++ R  N  + 
Sbjct: 361 GKISRYINEPLK 372


>gi|24645031|ref|NP_649788.2| eIF4AIII [Drosophila melanogaster]
 gi|7299019|gb|AAF54221.1| eIF4AIII [Drosophila melanogaster]
          Length = 399

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 90  ----TTLRETQVLCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 385

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 386 TQIDEMPMNVADLI 399


>gi|159125976|gb|EDP51092.1| inositol 5-phosphatase, putative [Aspergillus fumigatus A1163]
          Length = 429

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 35  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 95  VID------TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 148

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 149 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 208

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 209 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 268

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 269 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 328

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 329 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 388

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 389 ELYYSTQIDEMPM 401


>gi|329297696|ref|ZP_08255032.1| ATP-dependent RNA helicase SrmB [Plautia stali symbiont]
          Length = 442

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/357 (31%), Positives = 176/357 (49%), Gaps = 4/357 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q   +   L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTLLFSATLEGDN 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFC 251
                    +      A  ++       +       L  +   +V++L+    K AIVF 
Sbjct: 196 IKDFAERLLNDPVAIEADPSKSERKKIQQWYYRADNLEHKIKLLVHLLKQPEVKRAIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  +      + E   +   L GE+ Q  R+ A++ + DGR  V +ATDVAARGID+ 
Sbjct: 256 RKRERLHELVTWMHEAGLRSSYLEGEMVQANRNEAIKRLNDGRVNVLVATDVAARGIDID 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           ++  VI+ +L    +  LHR GRTGRAGRKG ++ ++  +      ++ R  N  + 
Sbjct: 316 NVTHVINYDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDHPLLGKISRYVNEPLK 372


>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 470

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++   + + +A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L +
Sbjct: 5   LNSFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + V + IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARMPRTLILEPTRELAAQVQENFDKYGLNHRLNVVLLIGGVSFEDQN 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +   + +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 122 RKLEQGADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRMLDMGFIPDIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L + +    + V +   +   + I  R V       D   V  
Sbjct: 182 TRQTLFFSATMAPEITKLTEQFLHSPICVEVTKASSTATTITQRLVKSGSKAWDKRAVLR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  +S   + L ++ F V AL G++ Q  R N L   +D +
Sbjct: 242 ELIDNEGDELKNAIIFCNRKKDISELFRSLTKYNFSVGALHGDMDQHSRMNTLADFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRA R G +  ++  + Q+
Sbjct: 302 LTLLVASDVAARGLDIPDVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTHDDQK 361

Query: 355 RAERLFREANVSVVW 369
               + + +   + W
Sbjct: 362 YISAIEKISKEKIEW 376


>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 456

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 187/378 (49%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q   +   L+  D++  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TLLAENDRF-SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L        S    P AL + PTRELA QV   L        +  A   GGV +  +  
Sbjct: 62  HLGTSAQTVGSGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSATIYGGVGMGNQLD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +++  PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+
Sbjct: 122 ALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEADRMLDMGFLPSIKRILTKLPKQ 181

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  + FSAT    I  LA+ +  +   +     N     I +R   V  + +   ++++
Sbjct: 182 NRQTLLFSATFEEGIKQLAREFMHNPQEIQATPSNTVADTITHRVHPVDGARKRELLLHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K  +VF  T+    + T  L +   +  A+ G  SQ +R  AL   +  R  V 
Sbjct: 242 LAADSRKQTLVFARTKHGADKLTTFLDKSGIKAAAIHGNKSQGQRLRALGDFKASRITVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L  VI+ +L    E+ +HR GRTGR G +G +V ++ Q+  +    
Sbjct: 302 VATDIAARGIDIDQLPQVINYDLPMVAEDYVHRIGRTGRNGAQGEAVSLVAQDEAKLLRA 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P  E
Sbjct: 362 IARLLKRDMDIRDVPGFE 379


>gi|227822942|ref|YP_002826914.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
 gi|227341943|gb|ACP26161.1| dead-box ATP-dependent RNA helicase [Sinorhizobium fredii NGR234]
          Length = 520

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 199/382 (52%), Gaps = 6/382 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +   Q I   LS  G+   T +Q   +   L+  D++  AQTG+GKT AFGL +
Sbjct: 11  LSTFKELGLSQQILATLSANGFEKPTPIQAQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM 70

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+A+  R  P +   AL +APTREL  Q+   L+    K+ + V V +GGVS++++ 
Sbjct: 71  IEKLVADGKRPDPRN-IRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQT 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 130 EQLARGVDILVATPGRLLDLVARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPK 189

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
            R+ L+FSAT+   I  LA  Y  D V+V +    +    ++     V   D +   +  
Sbjct: 190 NRQTLLFSATMPKQIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKQ 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    ++VF  T+    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 250 SLTNNPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKGFRDGEIRV 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L   P+  +HR GRT R GR G+++     +  R   
Sbjct: 310 LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLR 369

Query: 358 RLFREANVSVVWE--PAPSVEA 377
            + +   + +      APS +A
Sbjct: 370 DIEKLMGIQIAVASGEAPSDQA 391


>gi|164424171|ref|XP_962960.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
 gi|157070404|gb|EAA33724.2| ATP-dependent RNA helicase dbp-2 [Neurospora crassa OR74A]
          Length = 546

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 115 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 175 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 234 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  D ++VNI S +   +  I     +V+ S++ + ++ 
Sbjct: 294 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 353

Query: 238 ILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 354 HLEKIMEGRENQNKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 413

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + 
Sbjct: 414 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 473

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 474 SKQARELVGVLQEAKQQI 491


>gi|28900445|ref|NP_800100.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362335|ref|ZP_05775298.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877397|ref|ZP_05889752.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898434|ref|ZP_05906930.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28808756|dbj|BAC61933.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085113|gb|EFO34808.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090744|gb|EFO40439.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308111119|gb|EFO48659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328470398|gb|EGF41309.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 205/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL +APTRELA Q+   ++     T + V    GG  +  +   L+NG
Sbjct: 66  SGRTASRKTA-RALILAPTRELAEQIADNIKAYTKYTDLSVVAVFGGRKMSSQVSALENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++L+ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVANLEFLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + ++ +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNRDEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|146276411|ref|YP_001166570.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554652|gb|ABP69265.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 453

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 188/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    + + I + L++  +   T +Q   +   ++ +D++  AQTG+GKT+AFGL L
Sbjct: 9   MADFSTLGLSEKILQGLAKAQFTKATPIQVEAIPHVMQGRDLMGLAQTGTGKTLAFGLPL 68

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL       P +   AL +APTREL  Q+   LE     T V V    GG S++R+ 
Sbjct: 69  LHRLLGVGHPPPPRT-IRALILAPTRELVSQIAANLELFTKGTPVKVVTITGGASINRQT 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  GA I+V TPGRL D +    + + H   +VLDEAD+MLD+GF   +  I    P 
Sbjct: 128 ERLARGADIMVATPGRLIDLLDRNAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPL 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA  + ++ VRV +A   +    I      +   D+   + + 
Sbjct: 188 KRQTLLFSATMPKLIEELAHTFLREPVRVQVAPPGKPVEKIAQGVHFIPQGDKAKLLESY 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K+L    F+  ++ G  SQ +R   L   RDG   V 
Sbjct: 248 LLKHPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFRDGTLDVL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + ++ + PEN +HR GRT RAG +G +V  +          
Sbjct: 308 VATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAEGSAVAFVAPAEMDEFRA 367

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 368 VEKLLKQPIP 377


>gi|296184919|ref|ZP_06853330.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|296050701|gb|EFG90124.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 374

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 192/360 (53%), Gaps = 8/360 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   G+   + +Q   +   L   D++  AQTG+GKT+AFG  + S +   
Sbjct: 10  NLHKKVLQAIDAMGFEEPSQIQAEAIPVILSGNDMIGQAQTGTGKTLAFGAPVLSQI--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +    AL + PTRELA+QV  EL  +       +    GG  + R+ + L+ G 
Sbjct: 67  ----ESSDKISALVLTPTRELAIQVNDELARIAKFKRTKLLPVYGGQPIDRQIKSLRRGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHI+   L++S +  +VLDE+DEML++GF DDIE I+ S  K R+ L+F
Sbjct: 123 DVVVGTPGRILDHIKRNTLDLSGVNFLVLDESDEMLNMGFIDDIEEIIKSLNKDRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA  Y K+ V+       +     I      V   DR  ++  IL     
Sbjct: 183 SATMPKEIAKLASKYMKNEVKHIKIVKNSLTVEKIKQYYYEVKHKDRFESLCRILDIDEP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC T+  V    + +    + V  + G++ Q +R N L+  ++G     +ATDVA
Sbjct: 243 SSAIIFCKTKRGVDELVESMQARGYNVEGMHGDMGQNQRLNTLRKFKEGTLDFLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ D+  VI+ +L  + E+ +HR GRTGRA ++G++  ++        ++L +   
Sbjct: 303 ARGIDVDDVSHVINYDLPQDMESYVHRIGRTGRANKEGIAYSLVTPREYIMIKQLEKFTK 362


>gi|326203304|ref|ZP_08193169.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986562|gb|EGD47393.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 542

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 221/475 (46%), Gaps = 26/475 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + +A+ + G+   T VQ   +   L  +D++V ++TGSGKT  FG+++ 
Sbjct: 3   KTFNDLGVSAPLLKAIDDMGFKTPTEVQSKAIPHILNNEDLIVMSKTGSGKTAVFGVSML 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                E +       PL L + P RELAVQV  ++  +            G  +++ E +
Sbjct: 63  QMTDPEAE------GPLGLILTPARELAVQVDSDIHKMAKYLKHKTTAVYGQHNINVETQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV GTPGR+ DHI    L   +++ +VLDEAD MLD+GF D +  I+ + PK 
Sbjct: 117 TLKKGVSIVTGTPGRVFDHISHGSLVTKNIRFLVLDEADRMLDMGFLDQVVRIIKTLPKD 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  L+FSAT+ P I  +   Y ++   + I S+ +    I      V  ++++  +  +L
Sbjct: 177 RITLLFSATMPPEIHNICSRYMQNPTTIEIESQTKTVDTIHQVYYRVNYNEKNTQLNRLL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ ++FC+T+A+V R    L +  +   AL G++ Q +R N +Q  + G+  + +
Sbjct: 237 IVEKPESCMIFCNTKAAVDRVQSFLTKKGYSSQALHGDIPQSKRLNTIQQFKQGKFHILV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGI +  L LVI+ ++ ++ +N +HR GRTGRAG  G +  ++  +       +
Sbjct: 297 ATDVAARGIHIEGLSLVINYDVPNDKDNYVHRIGRTGRAGHDGRAFSLVTGDDIISLYEI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                  V  E  P      +   +   +  +  +S++  +K          D +K    
Sbjct: 357 EEHIGALVPEEELPDESTFNKALVE--AEQWIKTNSLK--DKAPRSTSSESTDIKK---- 408

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
                     +  +    +  S  D  R      K  G S  +        ++ G
Sbjct: 409 --------KSSYSKDPQKTPRSKPDYSRRPVTQGKPAGKSLSSEPRPE--RINKG 453


>gi|237735417|ref|ZP_04565898.1| ATP-dependent RNA helicase RhlE [Mollicutes bacterium D7]
 gi|229381162|gb|EEO31253.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. D7]
          Length = 418

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 109/356 (30%), Positives = 178/356 (50%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             Y   + +QE  +   +  +D+   A+TG+GKT AF L +   L   ++         A
Sbjct: 1   MKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQKLYLRDESEKYPRTIKA 60

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA+Q+    E +  +  +  AV  GGV    +   +  G  +++ TPGRL D
Sbjct: 61  LILAPTRELAIQINETFEAMNPQVNLKSAVIFGGVRQGSQVTKINRGIDVLIATPGRLID 120

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
                 +++ H++ +VLDEAD MLD+GF  DI  IL   P++ + ++FSAT+   I  L 
Sbjct: 121 LYNQGLVDLKHVEYLVLDEADRMLDMGFIKDIRKILRFIPRRHQTMLFSATLPDEIKHLV 180

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            +   D +++ I+S N     I+     V   ++   ++ +L      NAIVF  T+ +V
Sbjct: 181 SDLLNDPLKIMISSGNVTVEKINQSLYFVDKVNKAKLLIKLLENPQIYNAIVFVRTKRNV 240

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L +       + G+ SQ  R  AL   ++ + RV +A+D+AARGID+ +L  VI
Sbjct: 241 DTLCKKLIKAQITCEGIHGDKSQNARVRALNNFKNDKVRVLVASDIAARGIDIDELTHVI 300

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + +L    EN +HR GRT RAG  G ++       +   + + +  N  +     P
Sbjct: 301 NFDLPDQAENYVHRIGRTARAGASGEAITFCSFQEKALLKDIQKFINQDIPVVDNP 356


>gi|319794896|ref|YP_004156536.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315597359|gb|ADU38425.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 605

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 190/386 (49%), Gaps = 7/386 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +     I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +   
Sbjct: 3   FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62

Query: 62  LLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L       +        AL + PTRELA QV   +        +   V  GGV ++ +  
Sbjct: 63  LTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQIS 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D  +   L++S ++ ++LDEAD MLD+GF  D++ IL   PK+
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPKE 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT S  I  LA    K+   + +   N     I      V    +   + +I+
Sbjct: 183 KQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHII 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     +VF  T+   +   + L ++  + +AL G  SQ  R+ AL   + G  R  +
Sbjct: 243 NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V  +  + +   + +
Sbjct: 303 ATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQEI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
            R    ++   P   VE     D +R
Sbjct: 363 ERFTKQTI---PVQIVEGYGPEDGER 385


>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
 gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
          Length = 508

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 196/368 (53%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + L +      T +Q   + P L  +DV+  AQTG+GKT AF L +   L    
Sbjct: 17  LSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHRL--AP 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +       L ++PTREL+ Q+ + ++ L  K  +  AV +GGVS+  + + L +G  
Sbjct: 75  GKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLASGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D I  + ++++ ++ VVLDEAD+MLD+GF   I+ IL  +P  R+ L+FS
Sbjct: 135 VLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQTLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L+  +  D + V++    +    +++  + +    +  A+ +++R    + 
Sbjct: 195 ATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDRKGER 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+    +  K L        A+ G  SQ +R  AL   R G   V IATD+AAR
Sbjct: 255 VIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P + LV++ EL + PE  +HR GRT RAG +G +V     + +     + +   V+
Sbjct: 315 GIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIEKMLKVA 374

Query: 367 VVWEPAPS 374
           +  E AP 
Sbjct: 375 IPVENAPE 382


>gi|154271069|ref|XP_001536388.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
 gi|160380608|sp|A6RGE3|DBP2_AJECN RecName: Full=ATP-dependent RNA helicase DBP2
 gi|150409611|gb|EDN05055.1| hypothetical protein HCAG_08709 [Ajellomyces capsulatus NAm1]
          Length = 542

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 191/377 (50%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 124 VETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 184 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 243 RDLTRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA+++  D ++VNI S +   +  I     +V+  ++ + +  
Sbjct: 303 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRDRMAK 362

Query: 238 I----LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G
Sbjct: 363 HLDRIMEANKHSKVLIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTG 422

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVA+RGID+ D+  V++ +  +N E+ +HR GRTGRAG KG ++ +   +  
Sbjct: 423 KSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNA 482

Query: 354 RRAER---LFREANVSV 367
           ++A     +  E+   +
Sbjct: 483 KQARDLVAILSESKQQI 499


>gi|190572660|ref|YP_001970505.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
 gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
           K279a]
          Length = 470

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 195/378 (51%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY N T +Q+  +   L  +D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L  A  +  S    P AL +APTRELA QV   L        +  A   GGV +  +  
Sbjct: 62  HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V  PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQ 181

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  + FSAT    I  LA  + ++  ++ +  +N     I +R   V    + + ++++
Sbjct: 182 NRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V 
Sbjct: 242 LAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +    
Sbjct: 302 VATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRA 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P  E
Sbjct: 362 IVRLLGRDMDIRDVPGFE 379


>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
 gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
          Length = 549

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 189/382 (49%), Gaps = 6/382 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STLLAENDRFSPASAPL-----ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L A        S  +     AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAVQPNKVHTSHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVVWEPAPSVE 376
               + R     +     P  E
Sbjct: 361 LLRDIERLIKRELPRTVLPGFE 382


>gi|319637745|ref|ZP_07992511.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
 gi|317400900|gb|EFV81555.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
          Length = 463

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 145/457 (31%), Positives = 232/457 (50%), Gaps = 9/457 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT SP I  LA+++      V +A++N  +++++   + V    + N + 
Sbjct: 181 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRNLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRHIAAQSIHGDKSQQSRLETLNAFKEGTLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           E +       +  E    +E           QD       Q ++ +       K    + 
Sbjct: 361 EAIKELTGSDLKVE---RIEGFEPHWWSNSNQDEAETHQNQHNDSRSRRDDRNKRS--EY 415

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A+   +  +      +       ++GR R     R  
Sbjct: 416 ASKSDKNSKKTEDKNDPGIACGKIAGRTRRSRHERQP 452


>gi|148709275|gb|EDL41221.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 963

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 315 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 373

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 374 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 433

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 434 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 493

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 494 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 553

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 554 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 613

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 614 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 673

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 674 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 732

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 733 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 792

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 793 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 847

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 848 QEEERQEGGQSESFKRYEEE 867


>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
 gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   +   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPSEI-KPAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  IVF S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KSIENFLEKEIYKIPIPE 374


>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
 gi|257197409|gb|EEU95693.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
           prausnitzii A2-165]
          Length = 641

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 180/371 (48%), Gaps = 5/371 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+   +  A+++ GY + + +Q A + P L  +D++  AQTG+GKT AF L + 
Sbjct: 1   MTFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L A   R     A  AL + PTRELA+Q+G   E       +   V  GGV    +  
Sbjct: 61  DRLTASAPR--KKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVA 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++  PGRL D +    L++S+++  VLDEAD MLD+GF  D++ ++   P++
Sbjct: 119 ALKKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQ 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVN 237
           R+ LMFSAT+   I  LA     D   V +   +     I      V   ++      + 
Sbjct: 179 RQNLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWLI 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                   NA+VF  T+    +  K L +      A+ G  SQ  R  AL+  + G+ RV
Sbjct: 239 KNLKPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V       +    
Sbjct: 299 LVATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLA 358

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 359 GIEKLNRRQIP 369


>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
 gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
           16M]
 gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
 gi|254689182|ref|ZP_05152436.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|256044606|ref|ZP_05447510.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113486|ref|ZP_05454320.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|256257432|ref|ZP_05462968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
           16M]
 gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
 gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
 gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
 gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
 gi|254701699|ref|ZP_05163527.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 5 str. 513]
 gi|254704242|ref|ZP_05166070.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           suis bv. 3 str. 686]
 gi|256061039|ref|ZP_05451195.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           neotomae 5K33]
 gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
 gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
 gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
           23365]
 gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|62289879|ref|YP_221672.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|254697319|ref|ZP_05159147.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730216|ref|ZP_05188794.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
 gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|332285792|ref|YP_004417703.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
 gi|330429745|gb|AEC21079.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
          Length = 550

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 223/464 (48%), Gaps = 11/464 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   TSVQ A +   L   D++VS+QTGSGKT AF L   + +   N
Sbjct: 8   LAPSLLSAVLKAGFTEPTSVQAAAIPKALAGHDLMVSSQTGSGKTAAFMLPALNRI--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
              +  S    L + PTRELA+QV    +   A       AV +GG+    + + L    
Sbjct: 66  MPPNKGSGVQVLVLTPTRELAMQVAEATKQYGAHLKDLRTAVVVGGMPYGAQLKALSRRV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH++ K +N+S +  +VLDEAD MLD+GF +DIE I+  +P  R+ L+F
Sbjct: 126 DVLVATPGRLIDHLQAKRVNLSTVHTLVLDEADRMLDMGFIEDIETIVGRTPSDRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGA 244
           SAT+   I  LA    +D +++ I+ + ++H++I    +       +   + ++LR    
Sbjct: 186 SATLDGTIARLAAKMMRDPLQIEISGQKQKHTNITQSLLYADDNGHKMRLLDHLLRDSNL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF ST+         LA+  F   AL G+++Q++R+  L M++ G+ R+ +ATDVA
Sbjct: 246 DQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGMLQKGKLRILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R+     
Sbjct: 306 ARGIDVQGISHAVNYDLPMQAEDYVHRIGRTGRAGRSGLAYTLATHSERHKVRRIEHFIG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             +   PA  +E +  +   R    P + D      KK                G     
Sbjct: 366 QPI---PAEVIEGLEPKKTAR----PTYTDRNGSGGKKFGSRGGFGGGKPGFGGGKPSYG 418

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           R                G+ RF D          SR +F G   
Sbjct: 419 RKPGGDRAPYGDKPAFEGKPRFGDKPAYEGRSADSRKSFDGEER 462


>gi|126734915|ref|ZP_01750661.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
 gi|126715470|gb|EBA12335.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           CCS2]
          Length = 435

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 193/362 (53%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L E+G  + T +Q   +   +  +DV+  AQTGSGKT AFGL +   L+   
Sbjct: 8   LAPRLVNVLKEQGITDPTPIQTQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMIHALMKAG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P ++   L +APTRELA Q+   L      + + VA+ +GG  +  + + L  G  
Sbjct: 68  VKPNPKTS-RGLILAPTRELAKQIADNLTAYTKGSHLKVALVVGGAGIVAQTKRLAGGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  + + +     +VLDEAD+MLD+GF   +  I     K R+ +MFS
Sbjct: 127 LLVATPGRLIDLLDRRAVRLDETIYLVLDEADQMLDMGFIHALRRIAPLLAKDRQTMMFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y  DAVRV +    +    I+     VA + + + ++ +L  H  + 
Sbjct: 187 ATMPKLMGELAGTYLTDAVRVQVNPPGQAVKKINQSVHFVAQAAKTDLLIELLDKHRDEL 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    +  KVL +  F   ++ G  SQ +R  AL+  + G+ RV +ATDVAAR
Sbjct: 247 AIVFGRTKHGCEKLYKVLEKKGFAAASIHGNKSQGQRQRALEAFKSGKTRVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD+  V + +L +  EN +HR GRT RAG  G +V ++  +     + + +    +
Sbjct: 307 GLDIPDVRFVYNYDLPNVAENYVHRIGRTARAGADGSAVALVAPDEMIELKDIEKAMKET 366

Query: 367 VV 368
           + 
Sbjct: 367 IP 368


>gi|326563433|gb|EGE13698.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis 12P80B1]
          Length = 581

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 150/586 (25%), Positives = 255/586 (43%), Gaps = 54/586 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   +
Sbjct: 25  LNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---S 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +      AL + PTRELA+QV   +         + +V  +GG     + R L+ G 
Sbjct: 82  RKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M 
Sbjct: 142 QVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMS 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  +A+ +  +  +V+I  E+    +          + ++N ++ +L     K
Sbjct: 202 SATWDGAVGKIAERFTVNPEKVSIKVESAHIDESV--YYCDDFNHKNNILLQVLNNPKIK 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  V +ATDVAA
Sbjct: 260 QAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E + R    
Sbjct: 320 RGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKR 379

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +       +E  R    +  +R        +  + D ++  +    K            
Sbjct: 380 QMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHK------------ 427

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-----SLSVGSKQ 477
                    E     S    R+RF D  R+        ++ + +S F          ++Q
Sbjct: 428 --FGSRNRHEHRHERSFEGKRERFEDRERSVNRRENDENHERRNSRFEARSDRRFDKNRQ 485

Query: 478 KA-----EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
                   AR       R+               + T  +               D+  +
Sbjct: 486 GYYQADGTARQDKKAYTRNFDRRDND-------RNDTRFDKPTK---KFGTQTDFDRPRR 535

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNS-----------QDGATKRFKRF 567
            K  G +     G+   G KS+                A +RF  F
Sbjct: 536 NKAFGDKVKPNTGFDKFGGKSRPKAVEEIFFAKRQDKKAKRRFGEF 581


>gi|225441549|ref|XP_002281113.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 622

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 197/388 (50%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + + + +    YV  T VQ   +   L  KD++  AQTGSGKT AF   +
Sbjct: 162 VNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLSGKDLMACAQTGSGKTAAFCFPI 221

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R +    PLAL ++PTREL+ Q+  E      +TGV V V  GG  +
Sbjct: 222 ISGIMTGQFAQRPRGARTVYPLALILSPTRELSCQIHDEARKFSYQTGVKVVVAYGGAPI 281

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 282 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVE 341

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                       ++FSAT    I  LA ++    + + +         I  R   V  SD
Sbjct: 342 QMDMPPPGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEFVHESD 401

Query: 231 RDNAIVNILRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L    A  A       +VF  T+         L  + F    + G+ +QQER
Sbjct: 402 KRSHLMDLLHAQRANGAHGKQSLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQER 461

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 462 EHALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGL 521

Query: 344 SVFVIPQN---MQRRAERLFREANVSVV 368
           +     +N   + R    L +EAN  V 
Sbjct: 522 ATAFFNENNSSLARPLADLMQEANQEVP 549


>gi|27366822|ref|NP_762349.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|320158706|ref|YP_004191084.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|27358389|gb|AAO07339.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|319934018|gb|ADV88881.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 427

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 121/422 (28%), Positives = 204/422 (48%), Gaps = 10/422 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L L   LL 
Sbjct: 6   QGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLLE 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL  APTRELA Q+   ++     T + VA   GG  +  + R L+NG
Sbjct: 66  SGKSASRKTA-RALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERMLENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+K+  +   R+ +  EN     + +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     +     G+ +Q  R  AL+  ++G+ RV +ATDVA
Sbjct: 245 QQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE    ++   P F        K         ++P   AA   R+
Sbjct: 365 QRIRRIELAGYEPKSREAYIDKLNSKPSF--------KNRQGRRNNANEPTDQAAAERRL 416

Query: 424 HR 425
             
Sbjct: 417 AM 418


>gi|330822482|ref|XP_003291680.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
 gi|325078116|gb|EGC31785.1| hypothetical protein DICPUDRAFT_156303 [Dictyostelium purpureum]
          Length = 397

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 198/380 (52%), Gaps = 9/380 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +    
Sbjct: 24  TFESMGLGEELLRGIYNYGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +           +P AL ++PTRELA Q+ +    L     V V  C+GG ++  + + 
Sbjct: 84  CIDVN------VRSPQALILSPTRELAQQIQKVALALSEYMNVQVHACVGGKNMSDDIKK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+ D I  K L+  H+K ++LDEADEML LGF+  I  +    P+  
Sbjct: 138 LETGVHIVSGTPGRVLDMITRKSLSTRHIKMMILDEADEMLSLGFQQQINDVYRYLPEAT 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           ++++ SAT++  + T+ + +    VR+ +  +      I      +     +   + +I 
Sbjct: 198 QIVLVSATLTQDVVTMTEKFMSKPVRILLKRDELTLDGIKQFFVSVEKEEWKFGTLCDIY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V + T+ + E  F V ++ G++ Q+ER   ++  R G  RV I
Sbjct: 258 DSLTITQAVIFCNTKKKVDQLTEKMREANFTVASMHGDMVQKEREEIIKSFRSGENRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L  + EN LHR GR+GR GRKG+++  +  +  R    +
Sbjct: 318 TTDILARGIDVQQVSLVINYDLPIDRENYLHRIGRSGRFGRKGVAINFVKNSDIRILRDI 377

Query: 360 FREANVSVVWEPAPSVEAIR 379
            +  +  +   P    +AI 
Sbjct: 378 EQFYSTQIDEMPMNFADAIN 397


>gi|171687132|ref|XP_001908507.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943527|emb|CAP69180.1| unnamed protein product [Podospora anserina S mat+]
          Length = 489

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 115/389 (29%), Positives = 198/389 (50%), Gaps = 16/389 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 60  VQNFDEAGFPRYVMDEVKAQGFPAPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPA 119

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 120 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 179 RDLQRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  D ++V I S +   +  I     +V+ S++ + ++ 
Sbjct: 239 DRQTLMWSATWPKDVRNLASDFLTDFIQVTIGSMDLSANHRITQIVEVVSESEKRDKMIK 298

Query: 238 ILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 299 ELEKIMEDKTAENKCLIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 358

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  VI+ +  +N E+ +HR GRTGRAG KG ++     + 
Sbjct: 359 GKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITYFTTDN 418

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAI 378
            ++A  L    REA   +     P +E +
Sbjct: 419 AKQARDLVGVLREAKQVI----DPRLEEM 443


>gi|168052555|ref|XP_001778715.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669930|gb|EDQ56508.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 579

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/388 (29%), Positives = 192/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 129 VNTFAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPI 188

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++       P       PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  V
Sbjct: 189 IAGIMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPV 248

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H + R+++ G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I++
Sbjct: 249 HNQLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVE 308

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  +D
Sbjct: 309 QMDMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVQDAD 368

Query: 231 RDNAIVNILRYH-------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + +++++               +VF  T+         L    F    + G+ SQQER
Sbjct: 369 KRSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQER 428

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL+  R G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G+
Sbjct: 429 EHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGV 488

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  Q   R    L  E+N  V 
Sbjct: 489 ATAFFNEKDQSLARPLSELMTESNQEVP 516


>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
 gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
          Length = 416

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 193/368 (52%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G      +Q   +   L+  DVL  AQTGSGKT+AF L + + +L   
Sbjct: 14  LSSLLIKNLFNAGMSKPKLIQAQAIPVMLKGHDVLGIAQTGSGKTLAFSLPILNRILTLG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL + PTRELAVQ+   +  +   T +   + +GG+S   + + +  G  
Sbjct: 74  DKRHPKTA-RALILVPTRELAVQIEEAISAVAKGTHLSTCLILGGMSRLIQIKRMAKGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D IR K +++S  +  VLDEAD MLD+GF  D+  I +   KK +  +FS
Sbjct: 133 ILIATPGRLMDLIRSKYIDLSQSRFFVLDEADRMLDMGFISDVRQIANFLHKKCQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA N  K  +++ +  +     +I      V+ S++ + +  +L      +
Sbjct: 193 ATMPKEVNVLADNLLKKPIKIEVVPQGTTAVEITQVLYCVSTSEKKSVLSKLLTNPALAS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L +  + V  + G  SQ  R  AL+  R+G  R+ +ATD+ AR
Sbjct: 253 VIVFIRTKHGADSVARSLKKTGYSVATIHGNKSQNARQCALKDFREGLVRILVATDIVAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-RAERLFREANV 365
           GID+P +  VI+ +L  N E+ +HR GRTGR G  G ++ +  + ++R R   + R   +
Sbjct: 313 GIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITLFDEKVERARLSAIERLIRI 372

Query: 366 SVVWEPAP 373
            +  +  P
Sbjct: 373 KLTRKEIP 380


>gi|60115445|dbj|BAD90013.1| p68 RNA helicase [Tubifex tubifex]
          Length = 490

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 182/377 (48%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +P  +   L ++ +   T +Q       L   D++  AQTGSGKT+++ L    
Sbjct: 62  TFQEACLPDYVQLILRQQNWTQPTPIQAQGWPIALSGLDIVGIAQTGSGKTLSYILPAII 121

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+ L + PTRELA QV +  +     + V      GG     + RD
Sbjct: 122 HINHQ-PRLQYGDGPVCLVLVPTRELAQQVAQVAQLFGNTSSVRNVCVYGGAPKGPQIRD 180

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA I + TPGRL D +     N+     +VLDEAD MLD+GF   I  IL+     R
Sbjct: 181 LQRGAEICIATPGRLIDLLDAGKTNLQRCTYLVLDEADRMLDMGFEPQIRKILEQVRPDR 240

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRD---NAIV 236
           + LM+SAT    +  LA+ +  D +++NI S     +  I     + +  +++   N ++
Sbjct: 241 QTLMWSATWPKEVKQLAETFLTDYIQINIGSTQLTANHSILQIVDVCSEEEKESKLNRLL 300

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        +VF  T+   +     +    +    + G+ SQ+ER + L+  R+GR  
Sbjct: 301 QEIMGESNNKTMVFVETKRRANDLAYKMKRAGWMAACIHGDKSQEERDSVLRDFRNGRIP 360

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGRAG  G +  +       +A
Sbjct: 361 ILVATDVAARGLDVDDVKFVVNFDYPNCSEDYVHRIGRTGRAGHTGTAYTLFTPKNAPKA 420

Query: 357 ERLFR---EANVSVVWE 370
             L     EAN  +  +
Sbjct: 421 RDLIEVLTEANQQINPK 437


>gi|33598813|ref|NP_886456.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33574943|emb|CAE39607.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 481

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 194/382 (50%), Gaps = 9/382 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+        
Sbjct: 1   MRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARK 60

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    I+V T
Sbjct: 61  PGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVAT 120

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S 
Sbjct: 121 PGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSD 180

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA+    D   V++   N     +     LV    + + + +++R  G    +VF 
Sbjct: 181 EIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFT 240

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+ 
Sbjct: 241 RTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDID 300

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV--- 368
            L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R     +    
Sbjct: 301 QLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRA 360

Query: 369 ---WEPA---PSVEAIRERDAQ 384
              W P    P+ E   +R+ +
Sbjct: 361 VDGWTPPAGGPTAEDRADRERE 382


>gi|33603888|ref|NP_891448.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568864|emb|CAE35278.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 481

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 194/382 (50%), Gaps = 9/382 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             A+++ GY   T +Q   +   L+  D+L +AQTG+GKT  F L +   L+        
Sbjct: 1   MRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARK 60

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  L + PTREL  QV   ++       +   V  GGV+++ +   L+    I+V T
Sbjct: 61  PGRPRCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVAT 120

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  +L   PK+R+ L+FSAT S 
Sbjct: 121 PGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSD 180

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I +LA+    D   V++   N     +     LV    + + + +++R  G    +VF 
Sbjct: 181 EIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLVSHLIRESGWHQVLVFT 240

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +      A+ G  SQ  R+ AL   +DG   V +ATD+AARG+D+ 
Sbjct: 241 RTKHGANRLAEKLVKDGLSAAAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDID 300

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV--- 368
            L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +  + + R     +    
Sbjct: 301 QLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRA 360

Query: 369 ---WEPA---PSVEAIRERDAQ 384
              W P    P+ E   +R+ +
Sbjct: 361 VDGWTPPAGGPTAEDRADRERE 382


>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 629

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 192/391 (49%), Gaps = 18/391 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  + + +   G+   T VQ+  +   L  +D+L  AQTGSGKT AF   + S L+ +
Sbjct: 158 NLPPKLMQNIERAGFGKPTPVQKHSIPIVLAGRDLLSCAQTGSGKTCAFLFPIISNLMTQ 217

Query: 66  ND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
                         +  + P  L +APTREL+ Q+  E       TG    V  GG ++ 
Sbjct: 218 PGYETVMPHPELMDTLVTCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGGAAIQ 277

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ G  I+V TPGRL D I    +++ +++ +VLDEAD MLD+GF   I +I++ 
Sbjct: 278 YQLKQLERGCDILVATPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVEK 337

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +           MFSAT    I TLA+++  + + + +      H +I  + V     ++
Sbjct: 338 TGMPAPGQRITLMFSATFPKNIQTLARDFLHNNLNLTVGRVGSTHENILQKFVYCKDDEK 397

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + ++           +VF  T+   S     L ++ F+  ++ G+ +Q+ER  AL+  R
Sbjct: 398 RDLMLEA-IASVETLTLVFVKTKKEASILEYFLMKNGFKSSSIHGDKTQRERETALENFR 456

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVA+RG+D+ D+  VI+ +L  N E+ +HR GRTGRAG  G+S       
Sbjct: 457 RGITPILVATDVASRGLDINDVGHVINYDLPENIEDYVHRIGRTGRAGNTGISTSFFTDK 516

Query: 352 MQRRAERL---FREANVSVVWEPAPSVEAIR 379
             + A+ L     EA   V        + +R
Sbjct: 517 NNQIADDLITVLEEAKQEVPPFIVEGRDKLR 547


>gi|78776809|ref|YP_393124.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497349|gb|ABB43889.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 432

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 133/423 (31%), Positives = 217/423 (51%), Gaps = 8/423 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + +  A+ + GY   T++Q   +   L + DV  +AQTG+GKT AFGL +  
Sbjct: 2   SFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTGKTAAFGLGMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +D      A   L IAPTREL++Q+  +L+      G+ +AV +GG  +  +++ 
Sbjct: 62  RLRKTSD--DKQRALRGLVIAPTRELSIQIYEDLQSYAKNMGINIAVLVGGKDLESQQKI 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGR+ +H+     ++SH++  VLDEAD MLD+GF  +I  I    PK+ 
Sbjct: 120 LKEGVDIVIATPGRVLEHVDKGL-SLSHVEIFVLDEADRMLDMGFMKEIRRIHPILPKRH 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  +  L+K        +  + +N     I+  A LV    +   +  I+ 
Sbjct: 179 QTLLFSATFSDKVRKLSKLILTKPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+AS       L +   +   + G+ +Q  R   L   ++G+ +V +A
Sbjct: 239 SRNFRQVLVFTRTKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ +L  VI+ EL S PE+ +HR GRTGRAGR GM++ +I    +   + + 
Sbjct: 299 TDIASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYEKFDIKDIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDVLLAKHDPEKIAAG 419
           +   + +  E     E   +   +R+ QD L L S     E K       K D  K +A 
Sbjct: 359 KLIGMKIPQEIIAGFEP--DPTIRRLDQDELKLKSEHKKVEVKHERKPRKKEDGSKKSAN 416

Query: 420 FLR 422
           + +
Sbjct: 417 YKK 419


>gi|183598940|ref|ZP_02960433.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
 gi|188021152|gb|EDU59192.1| hypothetical protein PROSTU_02380 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 141/409 (34%), Positives = 217/409 (53%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P+     L+E GYV +T +QEA L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNTLPEEQLANLTELGYVTMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A+        +  +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDAKQ------FSTQSLVLCPTRELADQVASELRRLARYMANIKILTLCGGVPFSV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   + AHI+V TPGRL DH+  + + +  L+ +VLDEAD MLD+GF DDI+ ++  +
Sbjct: 115 QRDSLIHAAHIIVATPGRLLDHLNKETVKLDTLQTLVLDEADRMLDMGFADDIDEVISYA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    IT +++  Q++A+ + I S +   +  + R   VA  ++ + + 
Sbjct: 175 PISRQTLLFSATWPETITAMSQRIQRNAITIEINSVDELPAI-EQRFYEVARHEKIDLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L E    V+ L G++ Q+ER   L    +G +R
Sbjct: 234 KLLSQQQPASCVVFCNTKKDCQAVYDALNECHQSVLVLHGDMEQRERDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L++VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKSLDMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L    N+ + W+  P+   I        L+  +    I G +K  + 
Sbjct: 354 NVLEEMLNIKLNWKSVPTGLTITP------LEASMVTLCIDGGKKAKMR 396



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG       LCAPEE    +++      + + ++   G       
Sbjct: 320 WDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANVLEEMLNIKLNWKSVPTGLTITPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL--- 520
                  +  G K K     ++  L    G+    IG I + P   +V +          
Sbjct: 380 ASMVTLCIDGGKKAKMRPGDILGALTGDIGLAGDDIGKITIHPMHAYVAIKQSAARHAWK 439

Query: 521 -LRRTVKLDKGIQLKYL 536
            L++     K ++++ L
Sbjct: 440 QLQQGKIKGKSVKVRLL 456


>gi|297814273|ref|XP_002875020.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297320857|gb|EFH51279.1| hypothetical protein ARALYDRAFT_490504 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 507

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 135 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+         A+ I PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 195 IDQDNNVI------QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 248

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 249 YQPVHLLVGTPGRILDLAKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPENRQ 308

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      +  +   +N+  E             V    + + +  +   
Sbjct: 309 ILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGI-TQFYAFVEERQKIHCLNTLFSK 367

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 368 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 427

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 428 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 487

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 488 ELGTEIKQIPPHIDQAI 504


>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 648

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 208/461 (45%), Gaps = 15/461 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + +A+SE GY   + +Q + + P L  +D++  AQTG+GKT AF L +  
Sbjct: 2   TFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   R     A  AL + PTRELA+Q+G   +       +   V  GGV    +   
Sbjct: 62  RLSAAAPR--RKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  I++  PGRL D I    +++S+L+  VLDEAD MLD+GF  D++ ++   P KR
Sbjct: 120 IRKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD--NAIVNI 238
           + LMFSAT+   I  LA     D   V +   +     ID     V   ++      +  
Sbjct: 180 QNLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWLIK 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +NA+VF  T+    +  + L +      A+ G  SQ  R  AL+  ++G+ RV 
Sbjct: 240 NLTPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR--- 355
           +ATD+AARGID+ +L  V + +L   PE  +HR GRT RAG  G +V             
Sbjct: 300 VATDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAG 359

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            E+L R     V   P   V A  +         P+     + ++         K +   
Sbjct: 360 IEKLNRRKIPVVSGHPWDGVPAPVK------AAPPVRGRKPKAEQPAPEKAEAPKAEKAA 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
             A   +   A   A ++     + +  +R  DD++    G
Sbjct: 414 RPAAPEKKSAARPSAAKKQKAPKIEAKEERLMDDNKRTPGG 454


>gi|73969107|ref|XP_531736.2| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 1 [Canis
           familiaris]
          Length = 664

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 22/386 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     +     
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRVCKTDDTL 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR---------------QHSDIDYRAVLVALSD 230
           S    P               V   +E+                 + +I     +   S+
Sbjct: 277 SLFPFPPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESE 336

Query: 231 RDNAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +D+ ++ ++    A+     I+F  T+      T+ +    +  + + G+ SQ ER   L
Sbjct: 337 KDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVL 396

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R G+A + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +   
Sbjct: 397 NEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTF 456

Query: 348 IPQNMQRRAERLFR---EANVSVVWE 370
                 ++A  L +   EAN ++  +
Sbjct: 457 FTPGNLKQARELIKVLEEANQAINPK 482


>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
 gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
 gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
 gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
 gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
 gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
 gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
 gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
 gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
           VL426]
 gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
 gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
 gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
 gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
 gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
 gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3894-4]
          Length = 423

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
 gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
 gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
 gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
 gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
 gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
 gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
 gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
 gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
 gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
 gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
 gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
          Length = 423

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    ++ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  KD   V+     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
 gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
 gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
          Length = 416

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  K+   ++     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAITRFREGSVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|73949725|ref|XP_544339.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           [Canis familiaris]
          Length = 725

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 290 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 349

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 350 HMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYS 409

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 410 IRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 469

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 470 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 529

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 530 EKLVEILRSIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 649

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 650 DNHLAQPLVK 659


>gi|330873518|gb|EGH07667.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330967687|gb|EGH67947.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 442

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 185/368 (50%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG+ G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGQTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEADFE 376


>gi|225468923|ref|XP_002273212.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 470

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/419 (29%), Positives = 213/419 (50%), Gaps = 14/419 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++   + + EA    G+   + +Q   +   L  KD++  AQTGSGKT AF L +
Sbjct: 42  VKSFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPI 101

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL             A  ++PTRELA+Q+  + E L +  G+  AV +GGV   ++ 
Sbjct: 102 LQALLDTPQ------VLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQA 155

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVVGTPGRL DH+      ++  +K +VLDEAD +L+  F   I+ IL   P
Sbjct: 156 IALAKRPHIVVGTPGRLMDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIP 215

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT++  +  L +   ++ V++ +AS+      +  +   V    ++  +V 
Sbjct: 216 RERKTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVDTLKQQYRFVPAKYKECYLVY 275

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL        +VF  T  +      +L     + + +SG +SQ +R  AL   + G   +
Sbjct: 276 ILTELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGHMSQAKRLGALNKFKAGECNI 335

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+P +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q       
Sbjct: 336 LICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYI 395

Query: 358 RLFREANVSVVWEPAP----SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           ++ +     +   PA      +   R  +A+RI Q  +  ++    +++  D    + D
Sbjct: 396 QIEKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKVK-ETGGKKKRRGGDEGEEEID 453


>gi|322420162|ref|YP_004199385.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320126549|gb|ADW14109.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 477

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/471 (27%), Positives = 216/471 (45%), Gaps = 31/471 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +P ++ + + E G+ + T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELQLPDLVLKGIEETGFTDCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TRLLNQQ-KTGAEHHPRALILAPTRELVVQIEKDAQTLGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSLKDVEALVIDEADRMFDMGFIADLRFILRRLPTY 179

Query: 180 RRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +     FSAT++  +  LA  +     +V++  E      ++      +  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHASRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   + G   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPCKVISGDVEQRKRMKILSDFKAGILPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++ +  ++     E
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISLADEDGAFYIE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +       +  E A   + +   D +R  + P   D   G                   
Sbjct: 360 AIQDFIKQKIPTEWAE--DDMFVHDYKRTARPPRRSDDKPGG------------------ 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                  R G  A     P      R+R        K   G          
Sbjct: 400 -------RGGKPAGRGAKPGEREKPRERRGKSGGEKKKEAGEPATAAAEVR 443


>gi|240850330|ref|YP_002971723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
 gi|240267453|gb|ACS51041.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bartonella
           grahamii as4aup]
          Length = 467

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 195/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++     +  A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L +
Sbjct: 5   LNSFDDLGLSAKVINAVKSAGYTTPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRE+A QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFELQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHCERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V V +   +   + I  R V       D   V  
Sbjct: 182 TRQTLFFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTITQRLVKSGSKSWDKRAVLR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              H      +NAI+FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +
Sbjct: 242 ELIHNEGAELQNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+
Sbjct: 302 LTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKADQK 361

Query: 355 RAERLFREANVSVVW 369
               +   +N  + W
Sbjct: 362 YINAIEEMSNEKIEW 376


>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGIDHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
           'morsitans']
 gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 447

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/407 (28%), Positives = 191/407 (46%), Gaps = 4/407 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  A+S++G+   T++Q   +   +  +DVL SA TG+GKT A+ L +   LL  
Sbjct: 10  ELHEDLLAAISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + + L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLIVTPTRELAMQVAEQAKQLAAHTHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  D+E I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFALDVEQIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+                       S   +   + +      L+ +   +  +L+   
Sbjct: 188 SATLEGNAVKDFAGRLLNDPVEIDASPSRRERKKIVQWYYRADDLTHKTALLCKLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF   R  +      L +       L GEL Q +R+ A++ + DGR  V +ATDV
Sbjct: 248 VSKAIVFVRKRERLHEVVGWLRDSGIPSCYLEGELVQAKRNEAIKRISDGRMNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  VI+ +L +  +  LHR GRT RAGRKG ++ ++  +      ++ R  
Sbjct: 308 AARGLDIEDISHVINFDLPATADVYLHRIGRTARAGRKGCAISLVETHDHLLLGKISRYL 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           N  +       +       A+++   P      +  EKK       K
Sbjct: 368 NEPLKARTIDELRPTTRAPAEKMSGKPSKKVLAKRKEKKEQARTKDK 414


>gi|254719036|ref|ZP_05180847.1| ATP-dependent RNA helicase DDX17 [Brucella sp. 83/13]
 gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 482

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|87302363|ref|ZP_01085188.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
 gi|87283288|gb|EAQ75244.1| Superfamily II DNA and RNA helicase [Synechococcus sp. WH 5701]
          Length = 427

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 193/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++ +GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   L    
Sbjct: 1   MSEPLLKAIALKGYTCPSPIQVQAIPAVLSGRDVMAAAQTGTGKTAGFTLPMLERLRH-- 58

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +  +   +L + PTRELA QV   ++       +   V  GGV V+ + + L+ GA 
Sbjct: 59  GPHARNNQVRSLVLTPTRELAAQVAESVQAYGRFLDLRGDVVFGGVKVNPQMQRLRRGAD 118

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FS
Sbjct: 119 VLVATPGRLMDLYQQNAIRFDRLEILVLDEADRMLDMGFIRDIQKILALLPPKRQNLLFS 178

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +P+I  LA       +++    ENR    ++       ++ + + + +++R +  + 
Sbjct: 179 ATFNPSIRKLAHGLLHQPLQLQATPENRAAPLVEQVMHPCDMARKGDLLSHLIRSNDWQQ 238

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L++     +A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 239 VLVFSRTKHGANRLAERLSQEGVAAMAIHGNKSQGARTRALASFKSGELRVLVATDLAAR 298

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L +  E+ +HR GRTGRAG+ G ++ ++          + +     
Sbjct: 299 GLDIEQLPHVVNLDLPNVAEDYVHRIGRTGRAGQSGHALSLVAAEEHELLRAIEKVIGNP 358

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 359 LPRSEIPGFE 368


>gi|156380897|ref|XP_001632003.1| predicted protein [Nematostella vectensis]
 gi|156219053|gb|EDO39940.1| predicted protein [Nematostella vectensis]
          Length = 432

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 183/374 (48%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT A+ + L   
Sbjct: 49  FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   +  +   AL + PTRELA+Q  +    L    G  V V  GG S+  +   L
Sbjct: 109 ------TDTTKNCIQALVLVPTRELALQTSQICIELGKHMGAQVMVTTGGTSLKDDILRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  H++V TPGR+ D ++ K  ++S  + +V+DEAD++L + F+  +E I+   P+ R+
Sbjct: 163 YNKVHVIVATPGRVLDLMKKKLADMSKCQMLVMDEADKLLSMDFKKMLEQIIKHLPENRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    + + +    +N+  E   H         V    + + +  + + 
Sbjct: 223 ILLFSATFPISVRDFKEKHLRKPYEINLMDELTLHGV-TQYYAFVEEKQKVHCLNTLFQK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  F    +   +SQ  R+      R G  R  + +
Sbjct: 282 LQINQSIIFCNSVQRVELLARKILELGFSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++  
Sbjct: 342 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIEN 401

Query: 362 EANVSVVWEPAPSV 375
           E +  +  +P PSV
Sbjct: 402 ELDTEI--KPIPSV 413


>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
 gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
          Length = 522

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ + + L+ GA 
Sbjct: 66  GSRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMQRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL +E
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQE 364


>gi|156847065|ref|XP_001646418.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380643|sp|A7TGU7|DHH1_VANPO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|156117094|gb|EDO18560.1| hypothetical protein Kpol_2001p67 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 484

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +   
Sbjct: 34  NTFEDFYLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTL 93

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + +++++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 94  EKVKSKHNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 147

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     ++DEAD+ML   F+  IE IL   PK 
Sbjct: 148 RLNETVHILVGTPGRVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKN 207

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT   ++     N+      +N+  E             V    + + +  + 
Sbjct: 208 HQSLLFSATFPLSVKEFMVNHLHKPYEINLMDELTLKGI-TQYYAFVEEKQKLHCLNTLF 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 267 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLV 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 327 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 386

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 387 EQELGTEIQAIPA 399


>gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
          Length = 533

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/389 (31%), Positives = 195/389 (50%), Gaps = 4/389 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + +  A++E+GY   T +Q   +   L   D+L +AQTG+GKT  F L +  
Sbjct: 2   SFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQ 61

Query: 61  TLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       +      P AL + PTRELA QV   L        +      GGV +  + 
Sbjct: 62  RLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  IVV TPGRL DH   + +++S ++ +VLDEAD MLD+GF  D+  I+   PK
Sbjct: 122 NALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA ++  +  +V +A +N     ++     V    + + +V++
Sbjct: 182 QRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R       +VF  T+   +R  + L +         G  +Q  R  AL   + G+ +V 
Sbjct: 242 IRERNWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L +V++ EL + PE+ +HR GRTGRAG  G ++ ++  +       
Sbjct: 302 VATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFLRD 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387
           + +     +  E  P  E      AQ I+
Sbjct: 362 IEKLVRNPITQEVIPGFEPDPNAKAQPIV 390


>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 533

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/389 (31%), Positives = 195/389 (50%), Gaps = 4/389 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + +  A++E+GY   T +Q   +   L   D+L +AQTG+GKT  F L +  
Sbjct: 2   SFQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQ 61

Query: 61  TLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L       +      P AL + PTRELA QV   L        +      GGV +  + 
Sbjct: 62  RLSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  IVV TPGRL DH   + +++S ++ +VLDEAD MLD+GF  D+  I+   PK
Sbjct: 122 NALARGMDIVVATPGRLLDHQSQRNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA ++  +  +V +A +N     ++     V    + + +V++
Sbjct: 182 QRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R       +VF  T+   +R  + L +         G  +Q  R  AL   + G+ +V 
Sbjct: 242 IRERNWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L +V++ EL + PE+ +HR GRTGRAG  G ++ ++  +       
Sbjct: 302 VATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFLRD 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL 387
           + +     +  E  P  E      AQ I+
Sbjct: 362 IEKLVRNPITQEVIPGFEPDPNAKAQPIV 390


>gi|328863155|gb|EGG12255.1| hypothetical protein MELLADRAFT_46659 [Melampsora larici-populina
           98AG31]
          Length = 542

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 40  FEDLYLRRDLLMGIFEAGFERPSPIQEEAIPIALAGRDILARAKNGTGKTGAFVIPSLEK 99

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              + +R        AL + PTRELA+Q  +  + L   TG+ + V  GG ++  +   L
Sbjct: 100 TNVKLNRI------QALILVPTRELALQTSQVCKTLGKHTGIQIMVTTGGTTLKDDILRL 153

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q   HIVVGTPGR+ D       ++S  K  V+DEAD++L   F   IE +L    K+R+
Sbjct: 154 QETVHIVVGTPGRILDLAGKGVADLSQCKTFVMDEADKLLSPEFTVVIEQLLSFLHKERQ 213

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +      +      +N+  E             +    + + +  +   
Sbjct: 214 VMLFSATFPMIVKDFKDKHMVKPYEINLMEELTLQGV-TQYYAFLEERQKVHCLNTLFSK 272

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    + + +  +       ++ QQ R+      R+G  R  + +
Sbjct: 273 LQINQAIIFCNSTNRVELLARKITDIGYSCFYSHAKMLQQHRNRVFHDFRNGVCRNLVCS 332

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G +G+++ +I    +    R+ +
Sbjct: 333 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGIAINLITYENRFDLYRIEQ 392

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P+V
Sbjct: 393 ELGTEI--QPIPAV 404


>gi|222423092|dbj|BAH19526.1| AT4G00660 [Arabidopsis thaliana]
          Length = 374

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 2   FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 61

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+         A+ I PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 62  IDQDNNVI------QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 115

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 116 YQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQ 175

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      +  +   +N+  E             V    + + +  +   
Sbjct: 176 ILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGI-TQFYAFVEERQKIHCLNTLFSK 234

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 235 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 294

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 295 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 354

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 355 ELGTEIKQIPPHIDQAI 371


>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
           36-108]
          Length = 415

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 191/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELQLNDQVLDALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  +   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NNL---SEGKHPEDSINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSRVTYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA N   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPTKIQQLANNILNNPAEV-KLAVSKPADKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+      +  I+F S++  V   TK L +    V  +  +L Q +R + +   + GR  
Sbjct: 237 NLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREDVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + + +     +   P P 
Sbjct: 357 KNIEKFLEKDIYKIPVPE 374


>gi|257205736|emb|CAX82519.1| belle [Schistosoma japonicum]
          Length = 939

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 205/386 (53%), Gaps = 17/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +  + QVI E ++   Y++ T VQ+  L     ++D++  AQTGSGKT AF L +
Sbjct: 157 IKSFNDVELHQVIKENVTRAQYIHPTPVQKYALPIISAKRDLMACAQTGSGKTAAFLLPI 216

Query: 59  ASTLLAENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + L  +    +P ++       P+AL +APTREL+ Q+  E      ++ +   V  GG
Sbjct: 217 LNMLFEDKHCENPEASTLNCIAYPVALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGG 276

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S+  + R+L +G +++V TPGRL D +    +++  ++  VLDEAD MLD+GF   I  
Sbjct: 277 ASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRR 336

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++          + LMFSAT    I TLA+++    + + +      + +I    + VA
Sbjct: 337 IVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVA 396

Query: 228 LSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             D+ + +V +L+       A+VF  T+       K L +  F V ++ G+  Q ER +A
Sbjct: 397 DKDKPDMLVRLLQGKDPDGLALVFVETKRGADILAKFLCQLNFPVASIHGDRPQTEREHA 456

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           LQ  R GR  + IAT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G+ G +  
Sbjct: 457 LQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQSGSATS 516

Query: 347 VIP---QNMQRRAERLFREANVSVVW 369
                 QN+ R    L RE+   V  
Sbjct: 517 FFSEKNQNVVRDLVELLRESKQPVPP 542


>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
 gi|109825481|sp|Q29S22|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
 gi|296487253|gb|DAA29366.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
          Length = 457

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 217/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 26  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 86  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 140 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 200 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 259

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 260 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 319

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 320 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 379

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK     +  +D  
Sbjct: 380 IEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREH---GEKKKRSREDVGDNDDT 436

Query: 415 KIA 417
           + A
Sbjct: 437 EGA 439


>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
          Length = 440

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 201/375 (53%), Gaps = 7/375 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++  P+ + EA    G+     +Q   +   L+ KDV+  AQTGSGKT AF L +
Sbjct: 8   MKSFKDLGLPEELVEACDNLGWKTPLKIQIEAIPLALQGKDVIGLAQTGSGKTGAFALPI 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL         +   A  ++PTRELA+Q+  + E L +  GV  AV +GG+ + ++ 
Sbjct: 68  LHALLQAP----RPNHFFACVLSPTRELAIQISEQFEALGSGIGVKSAVLVGGIDMVQQS 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +    HI+VGTPGR+ DH++     ++S LK +VLDEAD +L+  F + +  IL   P
Sbjct: 124 IKIAKHPHIIVGTPGRVLDHLKNTKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGMIP 183

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++RR  +FSAT++  +  L +   ++ V++  +++      +  +   +    +D  +V 
Sbjct: 184 RERRTFLFSATMTKKVEKLQRVCLRNPVKIEASTKYSTVDTLKQQYRFLPAKRKDCYLVY 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       ++VF  T  +      +L     + + ++G +SQ +R  AL   + G   +
Sbjct: 244 ILTEMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNI 303

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q       
Sbjct: 304 LLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYI 363

Query: 358 RLFREANVSVVWEPA 372
           ++ +     +   PA
Sbjct: 364 QIEKLIGKKLPEYPA 378


>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 431

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 198/388 (51%), Gaps = 3/388 (0%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  +    I  A+S+ GY  +T VQ   +    R  DVL SAQTG+GKT AF L +   
Sbjct: 3   FESFDFAPEILRAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPILQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ +     P++A   L + PTRELA QV   +        V V   +GG     + + L
Sbjct: 63  LVDKPAELQPSNA-RVLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKKL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GAHI+V TPGRL +H+    L++S ++ +VLDEAD +LD+GF  D++ IL +  K+R+
Sbjct: 122 KAGAHIIVATPGRLLEHLTACNLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKERQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT S  +  LA         +++  +N     + +    V    +   +  ++  
Sbjct: 182 NLLFSATFSDGVKKLANVMLDKPQIISVNKQNSTADTVTHTVYPVEQKRKRELLSELIGK 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF STR S       L     +   + G+ +Q  R  AL+   +G+ RV +AT
Sbjct: 242 QNWPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVAT 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+PDL+ V++ +L    E+ +HR GRTGRAG+ GM++  + +  +R    +  
Sbjct: 302 EVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEIEA 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD 389
                +    A   E     +  + LQ+
Sbjct: 362 LIGQKIRRVMAKGYEVGNRDELIKQLQE 389


>gi|121997715|ref|YP_001002502.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121589120|gb|ABM61700.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 403

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 3/379 (0%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN  + Q +  A++++GY   T++Q   +   L   DV+ SAQTG+GKT AF L L  
Sbjct: 2   TFENIGLSQELLRAVAQQGYDQPTAIQAQAIPAVLGGGDVMASAQTGTGKTAAFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +        AL + PTRELA QV   +        +      GG  + ++   
Sbjct: 62  RLSDTAPQ-QGQRRIRALVLTPTRELAAQVSESVATYGRHLPLRSTEIYGGAPMGKQTAA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DH+    +++ H+  ++LDEAD MLD+GF+  IE IL S P +R
Sbjct: 121 LRRGVDIVVATPGRLIDHLDRGNVDLRHVDMLILDEADRMLDMGFKPAIERILKSVPNQR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S A+  LA+ +  +   +   + N     ++  A  V    +   +  ++ 
Sbjct: 181 QTLLFSATFSGAVGGLARRFLNEPTVIEAGTANAAAEAVEQGAYFVDAGRKRELLTQLIN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+    R  + L     +  ++ G+ SQ +R  AL   +    R  +A
Sbjct: 241 DGDWRQVLVFTRTKRGADRLAEQLEREGIRSQSIHGDKSQGQRGRALAAFKRKSVRALVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  V++ +L +NPE+ +HR GRTGR G  G +  ++    + + + + 
Sbjct: 301 TDVAARGLDIAGLPHVVNYDLPNNPEDYIHRIGRTGRGGDSGEAWSLVGGEERGQFKAIQ 360

Query: 361 REANVSVVWEPAPSVEAIR 379
           R     +  + A   E +R
Sbjct: 361 RLVKREIPAQIAQGFEPVR 379


>gi|84684138|ref|ZP_01012040.1| hypothetical protein 1099457000262_RB2654_16856 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667891|gb|EAQ14359.1| hypothetical protein RB2654_16856 [Rhodobacterales bacterium
           HTCC2654]
          Length = 439

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 186/371 (50%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  A+   GY   + +Q   +   L   DVL  AQTG+GKT AFGL L
Sbjct: 1   MTTFNDLGLDPKLLAAVKAAGYQTPSPIQVQAIPHALAGTDVLGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +D+  P     AL +APTREL  Q+   L      T + V   +GG S++++ 
Sbjct: 61  VQQLLGGHDKREP-KGVRALVLAPTRELVNQIADNLIAYVKGTHIKVNTVVGGKSINKQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +  K + +     +VLDEAD+MLD+GF   +  I      
Sbjct: 120 QILAKGTDILVATPGRLIDLMDRKAVRLDTATFLVLDEADQMLDMGFIHALRRIAPELGT 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
            R+ ++FSAT+   +  L++ Y  D V+V +A+  +    I           D+ + +  
Sbjct: 180 PRQTMLFSATMPKQMEELSRAYLTDPVKVQVAAPGKAADKITQGVHWAQDKGDKIDILKA 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       ++VF  T+    R  K L    F  V++ G  SQ +R  AL   RDG+ARV
Sbjct: 240 YLSDEPDGLSLVFARTKHGAERLMKQLCASGFDAVSIHGNKSQGQRDRALAAFRDGKARV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L +  EN +HR GRT RAG  G ++ ++  +      
Sbjct: 300 LVATDVAARGIDIPGVSHVFNFDLPNVAENYVHRIGRTARAGADGDAISLVTGDELGYLR 359

Query: 358 RLFREANVSVV 368
            + +   + + 
Sbjct: 360 DIQKLMKIDIP 370


>gi|224121758|ref|XP_002318665.1| predicted protein [Populus trichocarpa]
 gi|222859338|gb|EEE96885.1| predicted protein [Populus trichocarpa]
          Length = 541

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 194/375 (51%), Gaps = 4/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    + +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L     + A+
Sbjct: 126 NFPDYCLQVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYMLPAFVHVAAQ 185

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELAVQ+  E     +   +      GG     + RDLQ G 
Sbjct: 186 -PRLVQGDGPIVLVLAPTRELAVQIQEEGLKFGSPANIRSTCIYGGAPKGPQIRDLQRGV 244

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +
Sbjct: 245 EIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLYW 304

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+ +  +A +V I S + + +  I+    ++   ++ N ++ +L+    
Sbjct: 305 SATWPREVEILARQFLHNAYKVIIGSADLKANQSINQVVEVIMDMEKYNRLIKLLKEVMD 364

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + GR+ +  ATDV
Sbjct: 365 GSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSAIMTATDV 424

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D++ VI+ +  S+ E+ +HR GRTGRAG +G +      +  + A  L R  
Sbjct: 425 AARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGARGTAFTFFTDSNAKFARGLIRIL 484

Query: 364 NVSVVWEPAPSVEAI 378
             S    P P++ A+
Sbjct: 485 QESGQIVP-PALSAL 498


>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 436

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 119/399 (29%), Positives = 196/399 (49%), Gaps = 2/399 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++ +GY + + +Q   +   L  KD++ +AQTG+GKT  F L L   L    
Sbjct: 8   LSPAILSAVTAKGYTDPSPIQAQAIPAILEGKDIMAAAQTGTGKTAGFTLPLLELL--NR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +  +   AL + PTRELA QVG  +        +  AV  GGV ++ +   L+ G  
Sbjct: 66  GKHARGNQARALVLTPTRELAAQVGASVVDYGKDLPLRSAVVFGGVGINPQMIKLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ +L   P KR+ L+FS
Sbjct: 126 ILVATPGRLLDLYNQNAVRFDDLEVLVLDEADRMLDMGFIHDIKKVLKLLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V V+++  N     ++     V  + +  A++ +++ +  + 
Sbjct: 186 ATFSDDIRALAKGLVNNPVEVSVSPPNTTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R+ AL   + G+ R  +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GLDISQLPQVVNYDLPNVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLADIERFTKQI 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +  +       + +    R+   P+     +    +  D
Sbjct: 366 IPRKGIEGFAPVHDLPESRLDNRPIKPKKPKKPRVQHRD 404


>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 449

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/400 (27%), Positives = 194/400 (48%), Gaps = 6/400 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +   Q +  AL ++GY   T++Q A +   +  +D+L S+ TG+GKT A+ L + 
Sbjct: 11  TTFSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVI 70

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    + S    P  L + PTRELA+QV  + + L   T + +A   GGVS      
Sbjct: 71  QHLLDFPRKRS--GPPRILILTPTRELAMQVAEQAKALAKYTHLDIATITGGVSYVNHAE 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +
Sbjct: 129 IFSENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFANDIETIAGETRWR 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVN 237
           ++ ++FSAT++            +      A  +R+      +       L  +   + +
Sbjct: 189 KQTMLFSATLAGEAIHDFAERLLNNPHEIDADPSRRERKKIQQYYYRADNLEHKTALLCH 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+   A  +I+F   R       + L +   +   L GE+ Q +R+ A++ +  G+  V
Sbjct: 249 LLKQPDASKSIIFVRKRERAHELVQWLQQANIKTWLLEGEMVQAKRTEAVKRLNSGQINV 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+ D+  V + +L    +  LHR GRT RAGRKG+++ ++  + Q    
Sbjct: 309 LVATDVASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGIAISLVEAHDQPLLG 368

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           ++ R  N  +      S+    +  ++  L+       I+
Sbjct: 369 KINRYLNEPLKIRVIDSLRPTTKAPSESSLRKTKPSKKIR 408


>gi|242791510|ref|XP_002481772.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718360|gb|EED17780.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 387

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 14  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 74  VID------TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 128 LEYGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 188 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 248 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 308 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 367

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 368 ELYYSTQIDEMPM 380


>gi|121719103|ref|XP_001276289.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
 gi|142985525|sp|A1C595|FAL1_ASPCL RecName: Full=ATP-dependent RNA helicase fal1
 gi|119404487|gb|EAW14863.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus clavatus NRRL 1]
          Length = 399

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
 gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
 gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
          Length = 443

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 185/384 (48%), Gaps = 6/384 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++   +    A+   G+   T VQE  +   L  +DV+ +A TG+GKT AF L L 
Sbjct: 32  STFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLF 91

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     R     +P AL ++PTRELA Q+      L   +   +   +GG     +  
Sbjct: 92  ERI----GRAKRPGSPRALVVSPTRELAQQIDAACTQLAKASNRRMLTVMGGTKYKGQIA 147

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  ++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ ++ ++P  
Sbjct: 148 KLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSS 207

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   +     +  KD   V ++ +      ID   + V    +   +  +L
Sbjct: 208 RQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPELLRLVL 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G+K  IVF  T+      T  L    F+  ++  + +Q +R  AL+    G   V +
Sbjct: 268 QQRGSKRVIVFTDTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLV 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARGID+ ++E V++ +L  +PE+ +HR GRTGRAG  G ++  +    + +   +
Sbjct: 328 ATDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDI 387

Query: 360 FREANVSVVWEPAPSVEAIRERDA 383
            +     +        +A     A
Sbjct: 388 EKLLGERIPTLDIDGYDATEAEKA 411


>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
 gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
          Length = 413

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 188/372 (50%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F  +     + +AL + G+   T++Q  ++   +  +D+L SA TG+GKT AF L L
Sbjct: 1   MRTFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +  R  P  A  AL + PTRELA+Q+  +   L   TG+ +    GG+S     
Sbjct: 61  LQHLI-DFPRQKPGPA-RALILTPTRELAIQIADQARALAKYTGLKIITITGGISYQEHA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL +++  +  +   ++++VLDEAD MLD+GF   ++ +      
Sbjct: 119 EILGKTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADRMLDMGFGPAVDRLSSECRW 178

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     I    K    D V V      R+   I             NA++ 
Sbjct: 179 RKQSMLFSATLEGRGIEGFKKTLLTDPVEVEAEPPRRERKKITQWYYRCDDMTHKNALLK 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    AK AI+F  TR  ++   + L     +   L GE+ Q +R+ A++    G   V
Sbjct: 239 SILTEQAKRAIIFVKTRERLAALREYLTAEKIKCAWLQGEMPQAKRTYAIERFTRGEINV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD++ VI+ +L    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 299 LLATDVAARGIDVPDIDHVINFDLPRKADVYLHRIGRTARAGKKGNAISLVEAHDQPMMD 358

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 359 RICRYMKEDVKE 370


>gi|163746467|ref|ZP_02153825.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161380352|gb|EDQ04763.1| putative ATP-dependent RNA helicase, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 438

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 200/370 (54%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +P+ +   L+E G  + T +Q   +   +  +DV+  AQTG+GKT AFG+ L
Sbjct: 1   MSDFDMMGLPKKLVARLNEMGLKDPTPIQRQAIPQAMNGRDVMGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + ++    R  P  +   L +APTRELA Q+   L      T + VA+ +GG S++ + 
Sbjct: 61  LAQMMELEGRPEP-RSVRGLVLAPTRELAQQIAVNLRGYAEGTQIKVAMVVGGQSINTQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +++ TPGRL D +  + + +     +VLDEAD+MLD+GF  D+  I +  PK
Sbjct: 120 KRLERGVDLLIATPGRLLDLLDRRAVKLDTTTFLVLDEADQMLDMGFIHDLRKISNLIPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    +R+ ++   +    +      +A +++   +  +
Sbjct: 180 ERQTMLFSATMPKLMNEIANSYLNSPIRIEVSPPGKAADKVTQEVHFIAKAEKTELLKEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  K L +  F   ++ G  SQ +R  A+   + G   V 
Sbjct: 240 LAKHKGERALVFGRTKHGSEKLMKTLVKAGFDAASIHGNKSQGQRDRAIAGFKGGDITVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G +V     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNFELPNVPDNYVHRIGRTARAGKDGAAVAFCAPDEMGELKA 359

Query: 359 LFREANVSVV 368
           + +   +S+ 
Sbjct: 360 IQKTMGISIP 369


>gi|116191655|ref|XP_001221640.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
 gi|118575171|sp|Q2H720|DBP2_CHAGB RecName: Full=ATP-dependent RNA helicase DBP2
 gi|88181458|gb|EAQ88926.1| hypothetical protein CHGG_05545 [Chaetomium globosum CBS 148.51]
          Length = 562

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 192/378 (50%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 135 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 195 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQT 253

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 313

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+  M+SAT    +  LA ++  D ++VNI S +   +  I     +V  S++ + ++ 
Sbjct: 314 DRQTCMWSATWPKEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVVNESEKRDKMIK 373

Query: 238 ILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 374 HLEKIMEDKESQNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 433

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + 
Sbjct: 434 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 493

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 494 SKQARDLVGVLQEAKQHI 511


>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
 gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
           SKA14]
          Length = 473

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 125/378 (33%), Positives = 195/378 (51%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY N T +Q+  +   L  +D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L  A  +  S    P AL +APTRELA QV   L        +  A   GGV +  +  
Sbjct: 62  HLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V  PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQ 181

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  + FSAT    I  LA  + ++  ++ +  +N     I +R   V    + + ++++
Sbjct: 182 NRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V 
Sbjct: 242 LAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +    
Sbjct: 302 VATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRA 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P  E
Sbjct: 362 ITRLLGRDMDIRDVPGFE 379


>gi|71029108|ref|XP_764197.1| RNA helicase [Theileria parva strain Muguga]
 gi|68351151|gb|EAN31914.1| RNA helicase, putative [Theileria parva]
          Length = 635

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 175/375 (46%), Gaps = 9/375 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  + P+ I  ++   G+   T +Q       L  +D++  A+TGSGKT+AF L     
Sbjct: 212 FEYTSFPRYILSSIEAAGFKEPTPIQVQSWPIALSGRDMIGIAETGSGKTLAFLLPAIVH 271

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A+     P   P+ L +APTRELA Q+          + +  +V  GGV    +   L
Sbjct: 272 INAQAL-LRPGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKRFQTIAL 330

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++  PGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+
Sbjct: 331 RRGVEILIACPGRLIDFLESSVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQ 390

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAIVNI 238
            LMFSAT    +  L+++     V             H+      +L     R      +
Sbjct: 391 TLMFSATWPKEVIALSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRVKLKELL 450

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +       ++F  T+      T+ L    +  + + G+  Q+ER+  L   + G+  + 
Sbjct: 451 KKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKSGKHPIM 510

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRR 355
           IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG KG S   +  +     R 
Sbjct: 511 IATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKSARE 570

Query: 356 AERLFREANVSVVWE 370
             +L REAN  +  E
Sbjct: 571 LVKLMREANQEIPPE 585


>gi|319404344|emb|CBI77941.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 466

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 195/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N+   + + +A+   GY   T +Q   +   L++KDVL  AQTG+GKT +F L +
Sbjct: 5   LDNFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPHILQKKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD ML++GF  D+E I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  L K +    V + I   +     I  R V       D   V  
Sbjct: 182 TRQTLFFSATMAPEIAQLTKQFLHSPVYIEITEASSTAKTITQRLVKSGSKSCDKKAVLK 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  +S   + L +H F V  L G++ Q  R+N L   ++ +
Sbjct: 242 ELIQNEGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IA+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  ++
Sbjct: 302 FILLIASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEK 361

Query: 355 RAERLFREANVSVVW 369
               +   +   + W
Sbjct: 362 YIRAIEEISKEKIEW 376


>gi|195330738|ref|XP_002032060.1| GM23722 [Drosophila sechellia]
 gi|194121003|gb|EDW43046.1| GM23722 [Drosophila sechellia]
          Length = 399

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 198/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  +L   
Sbjct: 32  NLKEELLRGIYAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLD-- 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       L ++PTRELAVQ+ + +  L     V   VCIGG ++  + R L  G 
Sbjct: 90  ----TTLRETQILCLSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQ 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ 
Sbjct: 146 HIVSGTPGRVFDMIKRRVLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++      
Sbjct: 206 SATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV 
Sbjct: 266 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVW 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +
Sbjct: 326 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYS 385

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 386 TQIDEMPMNVADLI 399


>gi|150376621|ref|YP_001313217.1| DEAD/DEAH box helicase domain-containing protein [Sinorhizobium
           medicae WSM419]
 gi|150031168|gb|ABR63284.1| DEAD/DEAH box helicase domain protein [Sinorhizobium medicae
           WSM419]
          Length = 498

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 194/371 (52%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   Q I   L+  G+   T +Q   +   L+ +D++  AQTG+GKT AFGL +
Sbjct: 1   MSTFKELGLSQEILATLTANGFEKPTPIQTQAIPLVLQGRDLIGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+  R  P +   AL +APTREL  Q+   L+    KT + V V +GGVS++++ 
Sbjct: 61  IEKLQADGKRPDPRN-IRALILAPTRELVNQIATNLKLFVKKTPIKVGVVVGGVSINKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D I  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 EQLARGVDILVATPGRLLDLISRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
            R+ L+FSAT+   I  LA  Y  D V+V +    +    ++     V   D +   +  
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVTRPGKAADKVEQYVHFVPGKDLKTTILKQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    ++VF  T+    +  K L +  F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 240 TLTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L    +  +HR GRT R GR G+++     +  R   
Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVADAYVHRIGRTARNGRDGIAIAFCAPDEIRLLR 359

Query: 358 RLFREANVSVV 368
            + +   + + 
Sbjct: 360 DIEKLMGIEIA 370


>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|256159665|ref|ZP_05457418.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti M490/95/1]
 gi|256254934|ref|ZP_05460470.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           ceti B1/94]
 gi|260168662|ref|ZP_05755473.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           sp. F5/99]
 gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
 gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
 gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           B1/94]
 gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M490/95/1]
          Length = 435

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
 gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
           NRL30031/H210]
          Length = 463

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 189/378 (50%), Gaps = 9/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQRLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPADRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEVIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDANI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P +  VI+ +L    E+ +HR GRT      G+++     N   +  ++ +  N
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGRT------GIAITFAEVNEYVKVHKIEKYIN 360

Query: 365 VSVVWEPAPSVEAIRERD 382
             +       +E  R+R 
Sbjct: 361 RKLPELTIEGMEPTRKRK 378


>gi|290476142|ref|YP_003469042.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
 gi|289175475|emb|CBJ82278.1| ATP-dependent RNA helicase [Xenorhabdus bovienii SS-2004]
          Length = 447

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 193/391 (49%), Gaps = 9/391 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE + + +  AL+E+GY   T++Q   +   +  +DVL SA TG+GKT A+ L +  
Sbjct: 6   FSEFE-LDECLLNALNEKGYERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPVLQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    + S    P  L + PTRELA+QV  + +   A T + VA   GGV+       
Sbjct: 65  HLLDFPRKKS--GPPRILILTPTRELAMQVAEQAQSFAAHTNLDVATITGGVAYMNHAEV 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +D+E I   +  ++
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRK 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
           + L+FSAT+                    A  +R+      +       L  +   + ++
Sbjct: 183 QTLLFSATLEGETIRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRADNLEHKTALLCHL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      +IVF   R  V      L +   Q   L GE+ Q +R++A++ + DGR  V 
Sbjct: 243 LQQPDVTKSIVFVRKRERVREIVDYLHKAGIQACFLEGEMVQTKRTDAVKRLNDGRVNVM 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ ++  V + +L    +  LHR GRT RAGRKG ++ ++  +      +
Sbjct: 303 VATDVASRGLDIENISHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGK 362

Query: 359 LFREAN----VSVVWEPAPSVEAIRERDAQR 385
           + R  N    V VV E  P  +A  E+ + +
Sbjct: 363 VTRYLNEPLKVRVVDELRPQTKAPSEKKSYK 393


>gi|255089378|ref|XP_002506611.1| predicted protein [Micromonas sp. RCC299]
 gi|226521883|gb|ACO67869.1| predicted protein [Micromonas sp. RCC299]
          Length = 639

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 194/380 (51%), Gaps = 12/380 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F +I     I   +    + N T VQ+  +   L+ +D++  AQTGSGKT AF   +
Sbjct: 184 IKLFADIDFGAAINRNIQRCKFKNPTPVQKYAIPISLKRRDLMACAQTGSGKTAAFCFPI 243

Query: 59  ASTLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              ++    +  R    + P+AL ++PTRELA+Q+  E      +TGV   V  GG    
Sbjct: 244 IHGIIDRGLQAPRGGRKTFPIALVLSPTRELAIQIHEESRKFAYQTGVASVVVYGGAPAA 303

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----EF 171
           ++ R+++ G  +++ TPGRL D +    +++  ++ + LDEAD MLD+GF   I    E 
Sbjct: 304 QQFREMERGCDMLIATPGRLIDLVDRAKISLERIQYLALDEADRMLDMGFEPQIRQIVEQ 363

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                P  R+ ++FSAT    I  +A ++ +D + + +      H+ I      V   + 
Sbjct: 364 RGMPPPGDRQTMLFSATFPKEIQRMASDFLQDYIFLTVGRVGSSHTLITQTIEYVQSYND 423

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L +      +VF  T+    +    L++  F   ++ G+ +QQER  AL+  R
Sbjct: 424 KCQMLMDLVHAVQGLTLVFVETKRGADQLEDWLSQQGFPSTSIHGDRTQQEREWALKSFR 483

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG+KG++       
Sbjct: 484 SGKTPILVATDVAARGLDIPHVTHVINFDLPSDVDDYVHRIGRTGRAGKKGLATAFFTDK 543

Query: 352 MQ---RRAERLFREANVSVV 368
                R    +  EAN  V 
Sbjct: 544 DSSLARGLVEILSEANQDVP 563


>gi|119499061|ref|XP_001266288.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
 gi|142985577|sp|A1D071|FAL1_NEOFI RecName: Full=ATP-dependent RNA helicase fal1
 gi|119414452|gb|EAW24391.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Neosartorya fischeri NRRL 181]
          Length = 399

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
 gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
          Length = 500

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 215/458 (46%), Gaps = 3/458 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +   AL + PTRELA QV   +E       +   V  GGV V+ + + L+ G  
Sbjct: 68  KR--KFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L+FS
Sbjct: 126 VLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK   KD V +++A  N     ++    ++    +   +  +++ +  K 
Sbjct: 186 ATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++  +    + R     
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAIERLIQKV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +        E + +    ++   P+     +  +   V+    +   E    G  +  + 
Sbjct: 366 LPRHVLEGFEPVNKVPESKLDTRPIKPKKPKKPKAPRVEHKDGQRSGENRN-GNKQGAKQ 424

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           G     + TP +  SG+    D  +  +   G      
Sbjct: 425 GQKPATKRTPTNNPSGKKEGTDSDKKKRPFSGKPKTKG 462


>gi|269963602|ref|ZP_06177925.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831615|gb|EEZ85751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 430

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 206/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARRGHDIFATAQTGTGKTAAFSLPMIQRLLD 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+NG
Sbjct: 66  SGRNASRKTA-RALIMAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMPSQISALENG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA++  +   R+ +   N     + +    V    +   +  ++     
Sbjct: 185 FSATTSTQLNVLARDILRKPKRIEVERANTTAQTVAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ RV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QHIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|217968880|ref|YP_002354114.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|217506207|gb|ACK53218.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 441

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 199/377 (52%), Gaps = 6/377 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+   + + +A++  GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L   + 
Sbjct: 3   FENLGLAEELLKAVASTGYTTPTPVQQRAIPAAIAGRDLLVSSHTGSGKTAAFTLPALNR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRD 120
           ++    R +P S P  L + PTRELA QV + ++           A  +GG  +  + + 
Sbjct: 63  IIDR--RPAPGSGPRVLVLTPTRELAQQVEKAVQTYGKALRWLNTACLVGGAPMFAQIKQ 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +VV TPGRL DH+  + + +S ++ ++LDEAD MLD+GF +DI+ I+ ++P KR
Sbjct: 121 LQRQCDVVVATPGRLLDHLTRRKIKLSDVEVLILDEADRMLDMGFAEDIDAIVAATPAKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNIL 239
           + L+FSAT+   + ++A    +DA R+ I         I+ R +       +   +  +L
Sbjct: 181 QTLLFSATLDGVVGSMATRMTRDAERIEIEVAQEDRGQIEQRLMFADDLGHKSRLLHALL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G   A+VF +T+ S    +  L E      AL G++ Q +R+  L  +R GR  V +
Sbjct: 241 GEDGMNQAVVFTATKRSADELSLALQEKGISAAALHGDMHQTQRNRTLDRLRQGRIGVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +     E+ +HR GRTGRAGR G+++ +           +
Sbjct: 301 ATDVAARGIDVAGISHVINFDPPRQAEDYVHRIGRTGRAGRDGIAITLSGPRETGLIRAI 360

Query: 360 FREANVSVVWEPAPSVE 376
            R     +     P +E
Sbjct: 361 ERFTGDRLAVHTIPGME 377


>gi|119182910|ref|XP_001242554.1| hypothetical protein CIMG_06450 [Coccidioides immitis RS]
          Length = 388

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 191/368 (51%), Gaps = 7/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   +   G+ + +++Q   +    + +D +  AQ+G+GKT  F +++   +   
Sbjct: 2   HLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVID-- 59

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL ++PTRELA Q+   +  +     V    CIGG +V  + R L +G 
Sbjct: 60  ----TALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRKLDHGQ 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V GTPGR+ D IR + L   H+K +VLDEAD++L  GFR+ I  +    P   ++++ 
Sbjct: 116 HVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVL 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   + ++   +  D VR+ +  +      +    + +     + + + ++      
Sbjct: 176 SATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTI 235

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I+TDV 
Sbjct: 236 TQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVW 295

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +    +
Sbjct: 296 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDIELYYS 355

Query: 365 VSVVWEPA 372
             +   P 
Sbjct: 356 TQIDEMPM 363


>gi|313200940|ref|YP_004039598.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|312440256|gb|ADQ84362.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 541

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 208/452 (46%), Gaps = 14/452 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+++ GY   T +Q   +   L   D+L  AQTG+GKT  F L L   LL   
Sbjct: 16  LAEPILRAIADAGYTTPTPIQLQAIPQVLTGGDLLAGAQTGTGKTAGFTLPLL-HLLQGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  P  L + PTRELA QV   ++       +   V  GGV ++ +   L+    
Sbjct: 75  PGKNKAGQPRCLILTPTRELAAQVEESVQTYGKYLPLKSMVMFGGVGINPQVAQLKKPLD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FS
Sbjct: 135 ILVATPGRLLDHANQKTVDLSAVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFS 194

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     ++    LV  S + + + ++++ +  + 
Sbjct: 195 ATFSDEIKALADGLLHNPGFVEVARRNTASELVEQTVHLVRQSHKRDMVSHLIKQNNWQQ 254

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R    L +      A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 255 VLIFTRTKHGANRLADKLVKDGIPAAAIHGNKSQSARTKALAQFKDGSLPVLVATDIAAR 314

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL +  E+ +HR GRTGRAG  G +V ++ +   +  + + R     
Sbjct: 315 GLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGATGAAVSLVDEEEIKLLKGIER----- 369

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++    P VE   E      +      +  +    +       +  P +         R 
Sbjct: 370 LIKREIPRVEV--EGFVPSPVDKSAASEEREPRAPRPRQGQPRQGQPRQ------NQARQ 421

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                 + +P      R+         + G  
Sbjct: 422 SQPRDSQASPSQPRQPRENAARPGGQPRQGKP 453


>gi|309262543|ref|XP_003085827.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
 gi|309271943|ref|XP_003085450.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Mus
           musculus]
          Length = 670

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L   
Sbjct: 149 LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 208

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++ +         P+ L +APTRELA QV +          +      GG     + R
Sbjct: 209 VHIIHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 267

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 268 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 327

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ LM+SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ +
Sbjct: 328 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILL 387

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    ++     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 388 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKA 447

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 448 SILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 507

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
           A  L    REAN ++  +    VE 
Sbjct: 508 ASDLISVLREANQAINPKLLQLVED 532


>gi|330969509|gb|EGH69575.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|330952956|gb|EGH53216.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae Cit 7]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|330938172|gb|EGH41869.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|298490698|ref|YP_003720875.1| DEAD/DEAH box helicase domain-containing protein ['Nostoc azollae'
           0708]
 gi|298232616|gb|ADI63752.1| DEAD/DEAH box helicase domain protein ['Nostoc azollae' 0708]
          Length = 492

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 218/473 (46%), Gaps = 13/473 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     I  A++ERGY   T +Q   +   L   D+L  AQTG+GKT +F L L  
Sbjct: 2   SFSNLALSPEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLH 61

Query: 61  TLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L +  +  S ++      AL + PTRELA QV   +        +      GGVS++ +
Sbjct: 62  QLSSNKNVKSNSTGWVPIRALILTPTRELAAQVEESVHDYGKYLKLKSMAMFGGVSINPQ 121

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L++G  IVV TPGRL DH+    +N+S ++ +VLDEAD MLD+GF  DI  I+   P
Sbjct: 122 KRLLKSGVDIVVSTPGRLLDHVEQGTVNLSRIEVLVLDEADRMLDMGFIRDIRRIMSILP 181

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ L+F AT S  I  LA         + +A  N     I  RA  V    +   + +
Sbjct: 182 KKRQNLLFFATFSDKIKELAAGLLNRPTMIEVARRNVTADTIAQRAYQVDRDKKPQLLAH 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++       +VF  T+    R  K L +   Q +A+ G  SQ  R++AL   ++G  +V
Sbjct: 242 LIKQDDWYQVLVFTRTKYGADRLVKQLNDDRIQALAIHGNKSQGARTHALAKFKNGSLQV 301

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+ +L  V++ +L   PE+ +HR GRTGRAG +G ++ ++  +      
Sbjct: 302 LVATDIAARGLDISELPHVVNYDLPYVPEDYVHRIGRTGRAGARGEAISLVCVDEYHLLA 361

Query: 358 RLFREANVSVVWE--------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            + +     +  E        P    E I+    Q+    P       G + K+    L 
Sbjct: 362 DIEKLIQQKLPLEVITGFGINPEIKPEPIQNGRRQKPKPGPDQEMVGSGSKPKLSPQTLG 421

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           K      +    +   +   + E          ++  R  ++       S   
Sbjct: 422 KRKAALSSTDGRKSGASSSASHERKQKPKPSRHQETTRSGAKPKPSSQASGKR 474


>gi|66047524|ref|YP_237365.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258231|gb|AAY39327.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|307308978|ref|ZP_07588661.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900612|gb|EFN31225.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 504

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 226/478 (47%), Gaps = 14/478 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + I   LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +
Sbjct: 1   MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+A+  R  P +   AL +APTREL  Q+   L+    K+ + + + +GGVS++++ 
Sbjct: 61  IEKLVADGRRPDPRN-IRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 EQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
            R+ L+FSAT+   I  LA  Y  D V+V ++   +    ++     V   D +   +  
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    +++F  T+    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 240 TLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L   P+  +HR GRT R GR G+++     +  R   
Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLR 359

Query: 358 RLFREANVSVVWE--PAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + +   + +      AP+ +A   +    R    P      +G+          +  P+
Sbjct: 360 DIEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQSRGNGAGQRQGGPRRDRPQ 419

Query: 415 KIAAG-------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           + AA         LR  R+     +         GR     + +A K  G       G
Sbjct: 420 RQAAAGGFAGDDLLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQAG 477


>gi|163800373|ref|ZP_02194274.1| hypothetical protein 1103602000595_AND4_06819 [Vibrio sp. AND4]
 gi|159175816|gb|EDP60610.1| hypothetical protein AND4_06819 [Vibrio sp. AND4]
          Length = 430

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/424 (27%), Positives = 205/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGFDIFATAQTGTGKTAAFSLPMIQQLLE 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +   S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L++G
Sbjct: 66  SSRSVSRKTA-RALVMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQISALESG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    ++++++  +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVANIDFLVFDEADRILDMGFIHAVRKIMLDVDTNPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+      R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILHKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 RQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 477

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 7/369 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   I  AL+E  Y+  T +Q   +   L  +D++  AQTG+GKT +F L +
Sbjct: 7   LSSFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPI 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +  P  +   L ++PTREL+ Q+            +  A+ IGGV + R+ 
Sbjct: 67  LHRLLQNRIKPQP-KSCRVLVLSPTRELSGQILESFNAYGRHLRLTSALAIGGVPMGRQV 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G  ++V TPGRL D ++  GL +  ++ +VLDEAD MLD+GF  DI  ++   P 
Sbjct: 126 RAVMQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPV 185

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  LA+   +D  RV +         I  R + V  + +   +  +
Sbjct: 186 KRQTLFFSATMPKDIAELAEQMLRDPARVAVTPVASTVDRIAQRIIQVDHASKPAFLAQL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A++F  T+    +  K LA+   +  A+ G  SQ  R   L   R G  R  
Sbjct: 246 LKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSDAIHGNKSQNHRERVLAAFRTGEIRTL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +ATD+AARGID+  +  V++ +L + PE  +HR GRT RAG  G ++ ++    +    R
Sbjct: 306 VATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGADGAAISLVAGAEEMAYLR 365

Query: 355 RAERLFREA 363
             E+L R A
Sbjct: 366 DIEKLIRVA 374


>gi|91092124|ref|XP_972501.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Tribolium castaneum]
          Length = 540

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 179/377 (47%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   + + G+ + T +Q       L  +D++  A TGSGKT+++ L    
Sbjct: 92  TFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 151

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+AL +APTRELA Q+ +        + +      GG     +  D
Sbjct: 152 HINHQ-PRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQAND 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 211 LMDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  LA  + KD +++N      S N     I           + + ++
Sbjct: 271 QTLMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLL 330

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+F  T+  V   T+ +    +  V + G+ SQQER   LQ  R G+A 
Sbjct: 331 KEIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAP 390

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A
Sbjct: 391 ILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKA 450

Query: 357 ERL---FREANVSVVWE 370
             L    +EA   +  +
Sbjct: 451 ADLVSVLKEAKQVINPK 467


>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 404

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 12/389 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   LR  D+L  AQTG+GKT  F L L 
Sbjct: 12  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 71

Query: 60  STL-LAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L  A+ ++            AL + PTRELA QV   +        +   V  GGV +
Sbjct: 72  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 131

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 132 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 191

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 192 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 251

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 252 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT 311

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 312 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 371

Query: 355 RAERLFREANVSVV------WEPAPSVEA 377
               + R     +       +EP P++ A
Sbjct: 372 LLRDIERLIKRELPRTVLERFEPDPTIAA 400


>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
          Length = 560

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 195/389 (50%), Gaps = 12/389 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   LR  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STL-LAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L  A+ ++            AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAAQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPAKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSVEA 377
               + R     +       +EP P++ A
Sbjct: 361 LLRDIERLIKRELPRTVLERFEPDPTIAA 389


>gi|258571293|ref|XP_002544450.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
 gi|237904720|gb|EEP79121.1| eukaryotic initiation factor 4A-12 [Uncinocarpus reesii 1704]
          Length = 399

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+ + +++Q   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  +     V    CIGG +V  + R 
Sbjct: 86  VID------TALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   H+K +VLDEAD++L  GFRD I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFRDQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   + ++   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase domain-containing protein [Eggerthella lenta
           DSM 2243]
 gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
          Length = 414

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 184/384 (47%), Gaps = 6/384 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++   +    A+   G+   T VQE  +   L  +DV+ +A TG+GKT AF L L 
Sbjct: 3   STFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     R     +P AL ++PTREL  Q+      L   +   +   +GG     +  
Sbjct: 63  ERI----GRAKRPGSPRALVVSPTRELTQQIDAACTQLAKASNRRMLTVMGGTKYKGQIA 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  ++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ ++ ++P  
Sbjct: 119 KLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRMLDMGFWPTMKKVVAATPSS 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   +     +  KD   V ++ +      ID   + V    +   +  +L
Sbjct: 179 RQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGPMKKPALLRLVL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G+K  IVF  T+      T  L    F+  ++  + +Q +R  AL+    G   V +
Sbjct: 239 QQRGSKRVIVFADTKTRAEICTGQLKRAGFRADSIHSDKTQVQRKRALEGFSKGAIDVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARGID+ ++E V++ +L  +PE+ +HR GRTGRAG  G ++  +    + +   +
Sbjct: 299 ATDVLARGIDVSNIEYVVNYDLPESPEDYVHRIGRTGRAGETGYAISFVSPEAKAQLLDI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDA 383
            +     +        +A     A
Sbjct: 359 EKLLGERIPTLDIDGYDATEAEKA 382


>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|260174903|ref|ZP_05761315.1| ATP-dependent RNA helicase [Bacteroides sp. D2]
 gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|315923146|ref|ZP_07919386.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156110318|gb|EDO12063.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
 gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
 gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_23]
 gi|313697021|gb|EFS33856.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 422

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   +   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPSEI-KLAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  IVF S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KSIENFLEKEIYKIPIPE 374


>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 464

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 195/388 (50%), Gaps = 5/388 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L  
Sbjct: 2   SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +   + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + 
Sbjct: 62  RL--SSGPKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR
Sbjct: 120 LRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I  LAK    D V +++A++N     +      V  + +   + +++R
Sbjct: 180 QNLMFSATFSDEIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKTRKTALLSHLIR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +A
Sbjct: 240 TNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARG+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +  +       + 
Sbjct: 300 TDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGATGHAISFVTVDDAVDLYGIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           R     +        E I    A+R L 
Sbjct: 360 RFIGELIPRAEEDGFEPINP-VAERALD 386


>gi|291221307|ref|XP_002730663.1| PREDICTED: RNA helicase p47-like [Saccoglossus kowalevskii]
          Length = 454

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT ++ + +   
Sbjct: 66  FEDYCLNRELLMGIFEMGWEKPSPIQEESIPVTLSGRDILARAKNGTGKTGSYLIPILER 125

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + +  D         A+ + PTRELA+Q     + L    G  V V  GG ++  +   L
Sbjct: 126 IDSSKDYI------QAMVLVPTRELALQTSHTCKQLSKHLGARVMVTTGGTNLKDDIMRL 179

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIV+ TPGR+ D +      +S    + LDEAD++L   F++ ++  ++  P  R+
Sbjct: 180 YENVHIVIATPGRILDLMDKGVAKMSKCAFLCLDEADKLLSQDFKNMLDRCINFLPNDRQ 239

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++      +      +N+  E             V    + + +  +   
Sbjct: 240 IMLFSATFPLSVQEFMTRHLNKPYEINLMDELTLKGI-TQYYAFVQEKQKVHCLNTLFSK 298

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  +    +  ++ Q+ R+      R+G  R  + +
Sbjct: 299 LQINQSIIFCNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVCS 358

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ R
Sbjct: 359 DLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIALNLITYEDRFSLYQIER 418

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 419 ELGTEIKPIP 428


>gi|223590207|sp|A5DE68|FAL1_PICGU RecName: Full=ATP-dependent RNA helicase FAL1
 gi|190345565|gb|EDK37471.2| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 198/373 (53%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +R +D +  AQ+G+GKT  F + + S
Sbjct: 25  TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++       + +    AL ++PTRELA Q+   +E L     V    CIGG  V  + + 
Sbjct: 85  SID------TKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G HI+ GTPGR+ D I+ + +   H+K +VLDEADE+L  GF++ I  I  + P   
Sbjct: 139 LQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGA 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT++P +  +   +  D V++ +  ++     I    +       + + + ++ 
Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+A V+     + +  F V A+ G++ Q++R + ++  R G  RV I
Sbjct: 259 DNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG ++ ++    +   + L
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKSL 378

Query: 360 FREANVSVVWEPA 372
               +  +   PA
Sbjct: 379 QHYYSTKIREVPA 391


>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
 gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
          Length = 754

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 132/480 (27%), Positives = 237/480 (49%), Gaps = 23/480 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+S  G+   T +Q + +   L  KD++ +A TGSGKT AF + +   LL  
Sbjct: 180 NLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLERLLY- 238

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ     + L A T +   + +GG+S+  +   L+   
Sbjct: 239 REKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAALRQRP 298

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH+R     N+  L  +VLDEAD ML  GF D++  I+ + PK R+ ++
Sbjct: 299 DVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSRQTML 358

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHG 243
           FSAT++ ++  L K      VR+ +  +      +      +   SDR   +V + +   
Sbjct: 359 FSATMTDSVDELIKMSLNKPVRLFVDPKRSTARGLIQEFVRIRKESDRPAMLVALCKQTY 418

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  ++    +   V +    +   L G+LSQ++R  ALQ  R+G     +ATD+
Sbjct: 419 KHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDYLMATDL 478

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +E V++ ++       LHR GRT RAGRKG SV ++ +  ++  +   + A
Sbjct: 479 ASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLKAAIKHA 538

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                        A  ++  QR+L   +   + D ++G + ++ +V+  + + +++    
Sbjct: 539 -------------AGEDQVRQRVLDTTVVQKYADKLEGLKGEIAEVMREEKEEKQLRQAE 585

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           + + + G    +    +     R  F+ +    K    S+   +G    S + G + KA+
Sbjct: 586 MELTK-GENMMKHQDEIFSRPARTWFQTNKEKEKAKEISKQLHEGK---SAAKGKQSKAD 641


>gi|302184790|ref|ZP_07261463.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           syringae 642]
          Length = 442

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMKLRRGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAAASVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|71024093|ref|XP_762276.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
 gi|74699014|sp|Q4P184|FAL1_USTMA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46101778|gb|EAK87011.1| hypothetical protein UM06129.1 [Ustilago maydis 521]
          Length = 397

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 198/374 (52%), Gaps = 9/374 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   + + +   +    +   +++Q+  + P +R +DV+  AQ+G+GKT  F +++ 
Sbjct: 24  TTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISML 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++       +      AL ++PTRELA+Q+   +  L     V    CIGG SV  + R
Sbjct: 84  QSID------TTLRETQALVLSPTRELAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIR 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G HIV GTPGR+ D IR + L   ++K ++LDE+DE+L++GF+D I  +    P  
Sbjct: 138 KLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYDVYRYLPPS 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + ++
Sbjct: 198 TQVVLLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A++FC+TR  V   +  + E+ FQV ++ GE+ Q+ER   +   R G +RV 
Sbjct: 258 YDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQKERDEVMAEFRQGSSRVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARGID+ ++ LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    
Sbjct: 318 ITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTLRD 377

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 378 IEQFYSTQIDEMPV 391


>gi|301785421|ref|XP_002928123.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Ailuropoda melanoleuca]
          Length = 692

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 257 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 316

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 317 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 376

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 377 IRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 436

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 437 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 496

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 497 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 556

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 557 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 616

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 617 DNHLAQPLVK 626


>gi|301785419|ref|XP_002928122.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 271 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 330

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 331 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 390

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 391 IRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 450

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 451 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 510

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 511 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 570

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 571 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 630

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 631 DNHLAQPLVK 640


>gi|281337523|gb|EFB13107.1| hypothetical protein PANDA_018037 [Ailuropoda melanoleuca]
          Length = 491

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 81  TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 140

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 141 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 200

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 201 IRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 260

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 261 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 320

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 321 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 380

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 381 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 440

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 441 DNHLAQPLVK 450


>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
 gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
          Length = 436

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 182/360 (50%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +  +   AL + PTRELA Q+            +  +V  GGV ++ +   L+ G  
Sbjct: 66  GGRTRPNHVRALILTPTRELAAQIHENAVVYSRHLPLRSSVVFGGVKINPQMMALRKGTD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ ILD  PK R+ L+FS
Sbjct: 126 ILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++          +   +  +++    K 
Sbjct: 186 ATFSDEIRNLAKGLVNNPVEISVTPANSTARTVEQCIYPADKKKKPAMLSKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L E       + G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANKLARFLNEEGITAAPIHGNKSQSARTKALADFKTGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           GID+P L  V++ E+    E+ +HR GRTGRAG  G ++ ++  +        ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFEIPHVAEDYVHRIGRTGRAGEPGKAISLVCADEADDLFGIERLIQQL 365


>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
 gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
          Length = 482

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|153839935|ref|ZP_01992602.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260901625|ref|ZP_05910020.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149746542|gb|EDM57530.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308108886|gb|EFO46426.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|328470634|gb|EGF41545.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 417

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 131/412 (31%), Positives = 205/412 (49%), Gaps = 11/412 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   
Sbjct: 5   FADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQA 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L      T + +    GG S+  ++  L
Sbjct: 65  VQQKKRNGT----PHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  ++
Sbjct: 121 EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    I T+A       V V ++  N     +      V    +   +  ++  
Sbjct: 181 IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 241 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ Q+ +     +  
Sbjct: 301 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAIET 360

Query: 362 EANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             +  +  E     E   I E + +R   D       +  EK+ +   LA H
Sbjct: 361 LLDQRLPQEWLEGFEPSLIEEVEPER---DGGGRRKSRSSEKRKLKAKLAIH 409


>gi|225435708|ref|XP_002283489.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147854540|emb|CAN78578.1| hypothetical protein VITISV_013679 [Vitis vinifera]
          Length = 612

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 194/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 152 VNTFAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPI 211

Query: 59  ASTLLAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            S ++       P        PLAL ++PTREL+ Q+  E +    +TGV V V  GG  
Sbjct: 212 ISGIMKGQASQRPPRGARTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAP 271

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           + ++ RDL+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I+
Sbjct: 272 ISQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIV 331

Query: 174 DSSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +      +     ++FSAT    I  LA ++  + V + +         I  R   V  +
Sbjct: 332 EQMDMPPQGVRQTMLFSATFPKEIQKLASDFLSNYVFLAVGRVGSSTDLIVQRVEFVHDT 391

Query: 230 DRDNAIVNILR-------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
           D+ + ++++L        +      +VF  T+         L  + F    + G+ +QQE
Sbjct: 392 DKRSHLMDLLHAQRANGVHGKQYLTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQE 451

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G
Sbjct: 452 REQALRSFKSGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTG 511

Query: 343 MSVFVIPQN---MQRRAERLFREANVSVV 368
           ++      N   + +    L +EAN  V 
Sbjct: 512 LATAFFNDNNSSLAKALSELMQEANQEVP 540


>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
          Length = 422

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 187/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   LSE G VN T +Q+  +   L+ KDVL  AQTG+GKT AFGL L    + + 
Sbjct: 13  LDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQP 72

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +    AL + PTRELA QV   L+     T + +    GG S+  +   L+ G 
Sbjct: 73  WQRETNSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L +  ++ +VLDEAD MLD+GF  D++ +L      R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D + V +   N     +      V    +   +  ++     +
Sbjct: 193 SATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQIVYPVDKKRKRELLSYLIGSKNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR       + L     + V+++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG  G++V ++  + Q + E + R  N 
Sbjct: 313 RGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIERLLNT 372

Query: 366 SVVWEPAPSVE 376
            +  E     E
Sbjct: 373 RLPQEWLKGFE 383


>gi|3775993|emb|CAA09199.1| RNA helicase [Arabidopsis thaliana]
          Length = 505

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+         A+ I PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 193 IDQDNNVI------QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 246

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 247 YQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQ 306

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      +  +   +N+  E             V    + + +  +   
Sbjct: 307 ILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGI-TQFYAFVEERQKIHCLNTLFSK 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 426 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 485

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 486 ELGTEIKQIPPHIDQAI 502


>gi|298385617|ref|ZP_06995175.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
 gi|298261758|gb|EFI04624.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
          Length = 413

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 188/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NKL---SEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    +   +   + +R    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPAEI-KLAVSRPADKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P+
Sbjct: 357 KSIENFLEKEIYKIPVPA 374


>gi|239831816|ref|ZP_04680145.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
 gi|239824083|gb|EEQ95651.1| ATP-dependent RNA helicase dbp2 [Ochrobactrum intermedium LMG 3301]
          Length = 484

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 190/375 (50%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVLAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFAKYGINQRLNVALLIGGVSFDDQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +     RV +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSTKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIRAEGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLSNFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LQLLVASDVAARGLDIPDVSHVFNFDIPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 357

Query: 355 RAERLFREANVSVVW 369
               +       + W
Sbjct: 358 YLAAIEDMIGEKIEW 372


>gi|239816654|ref|YP_002945564.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239803231|gb|ACS20298.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 601

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 190/386 (49%), Gaps = 7/386 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +     I +A+ E GY   T +Q   +   L   D+L  AQTG+GKT AF L +   
Sbjct: 3   FDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPMLHK 62

Query: 62  LLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L       +        AL + PTRELA QV   +        +   V  GGV ++ +  
Sbjct: 63  LSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLELDSTVIFGGVGMNPQIS 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D  +   L++S ++ ++LDEAD MLD+GF  D++ IL   PK+
Sbjct: 123 KLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVPKE 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT S  I  LA    K+   + +   N     I      V    +   + +I+
Sbjct: 183 KQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAHII 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     +VF  T+   +   + L ++  + +AL G  SQ  R+ AL   + G  R  +
Sbjct: 243 NENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRALV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  V++ E+ +  E+ +HR GRTGRAG  G +V  +  + +   + +
Sbjct: 303 ATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFMQEI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
            R    ++   P   VE     + +R
Sbjct: 363 ERFTKQTI---PVQFVEGFGPEEGER 385


>gi|29346241|ref|NP_809744.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568326|ref|ZP_04845737.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
 gi|29338136|gb|AAO75938.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842399|gb|EES70479.1| ATP-dependent RNA helicase [Bacteroides sp. 1_1_6]
          Length = 422

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 188/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELKLNANVLDALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NKL---SEGGHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPASSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    +   +   + +R    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPAEI-KLAVSRPADKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFTDEVPERVIIFASSKIKVKEVTKALKMMKLNVGEMHSDLEQAQREVVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFISEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P+
Sbjct: 357 KSIENFLEKEIYKIPVPA 374


>gi|321473370|gb|EFX84337.1| hypothetical protein DAPPUDRAFT_209410 [Daphnia pulex]
          Length = 592

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 219/479 (45%), Gaps = 16/479 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  +DV   A TG+GKT AF L +   L+  
Sbjct: 22  NLSRPLMKAIASMNFVHPTPIQSATIPVALLGRDVCGCAATGTGKTAAFMLPVLERLMY- 80

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   ++    L + PTREL VQV +  + L   T + + + IGG+ +  + + L+   
Sbjct: 81  --RPKVSATTRVLVLVPTRELGVQVYQVSKQLSQFTNIQIGLSIGGLDLKVQEKVLRGNP 138

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH       ++  +  ++LDEAD MLD  F + ++ I+    +KR+ ++
Sbjct: 139 DVVIATPGRLIDHLRNTPSFSLEAIDVLILDEADRMLDEFFIEQVKEIIMQCGRKRQTML 198

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RY 241
           FSAT+S  +  LA       ++V + +      ++    V +  +   +    +      
Sbjct: 199 FSATMSNEVRDLAAVSLNKPIKVFVNNNRDVAFNLRQEFVRIRPNHEGDREAILCALVCR 258

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R    L     +V  L G LSQ +R  AL+  ++    + ++T
Sbjct: 259 TFRNHCMVFVQTKMLCHRLHVQLGLLGIRVGELHGNLSQPQRLEALRKFKEEDIDILVST 318

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P ++ VI+  +    E  +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 319 DVAARGLDIPGVQTVINYTMPPTIERYIHRVGRTARAGRSGVSVSLAGEGERKVVKEIVK 378

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            AN  V     P+ E + +   +  L DP     I  ++ +     +      +I     
Sbjct: 379 RANNPVKSRLIPN-EILEKYKKKLALIDPDVESIITEEKSESQLSAME----NQINRAEK 433

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
            +   G  A  +         R   +D  +    GG + +  K        +G  QK +
Sbjct: 434 MVKVKGEPAAPKRQWFQTHQERLDEKDRFKLASEGGATEERPKPKK----KLGENQKIK 488


>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
 gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Alteromonadales bacterium TW-7]
          Length = 465

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 194/388 (50%), Gaps = 5/388 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L  
Sbjct: 2   SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       + ++   AL +APTRELA+QV   +E     + V   V  GGV ++ + + 
Sbjct: 62  RLSTGPK--AKSNHVRALILAPTRELALQVSENVEEYAKHSNVSSFVVYGGVKINPQMQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P KR
Sbjct: 120 LRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRMLDMGFIHDIKRLIAKMPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I  LAK    D V +++A++N     +      V    +   + +++R
Sbjct: 180 QNLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQSVYAVDKGRKTALLSHLIR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +R  K L        A+ G  SQ  R  AL   + G  RV +A
Sbjct: 240 SNDWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALDGFKSGEVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARG+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +  +       + 
Sbjct: 300 TDIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           R     +        E +    A+R L 
Sbjct: 360 RFIGELIPRAEEEGFEPVNP-VAERALD 386


>gi|40788370|dbj|BAA34521.2| KIAA0801 protein [Homo sapiens]
          Length = 1058

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 409 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 467

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 468 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 527

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 528 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 587

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 588 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 647

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 648 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 707

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 708 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 767

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 768 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 826

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 827 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 886

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 887 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 942

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 943 QEEERQDGGQNESFKRYEEE 962


>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
 gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
          Length = 399

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 195/385 (50%), Gaps = 10/385 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L      +       A
Sbjct: 1   MKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY------FA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH-IVVGTPGRLC 136
           L +APTRELA Q+    + L +  G+  +  +GG+ +  + RDL    H IV      + 
Sbjct: 55  LVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMD 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
                KG ++ +LK +V+DEAD +LD+ F   ++ IL   P KR   +FSAT++  I  L
Sbjct: 115 HLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYLFSATMTNKIEKL 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +    + VRV ++S+ +   ++    +LV    ++  ++++L     K+ IVF  T A 
Sbjct: 175 QRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAH 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R   +     F  V L G+LSQ +R  +L   +  +A + +ATDVAARG+D+P +++V
Sbjct: 235 AQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ ++ ++ +  +HR GRT RAGR G S+ +I Q       R+       +  E  P  E
Sbjct: 295 INYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIESVLGKKLPKEDKPPKE 354

Query: 377 AIRERDAQRILQDPLFLDSIQGDEK 401
            +   DA  +  D    ++I+  ++
Sbjct: 355 VL---DALHVHVDKATAEAIRQTKE 376


>gi|156976669|ref|YP_001447575.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156528263|gb|ABU73348.1| hypothetical protein VIBHAR_05443 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 117/424 (27%), Positives = 204/424 (48%), Gaps = 4/424 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL+E GY  LT +Q+  +    +  D+  +AQTG+GKT AF L +   LL 
Sbjct: 6   QGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPMIQQLLE 65

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL +APTRELA Q+   ++     T + VA   GG  +  +   L+ G
Sbjct: 66  SGRSASRKTA-RALIMAPTRELAEQIADNIKAYTKYTDLSVAAIFGGRKMSSQVTALEGG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    ++++ ++ +V DEAD +LD+GF   +  I+       +++M
Sbjct: 125 VDILVATPGRLEEHIEQGNVSVASIEFLVFDEADRILDMGFIHAVRKIMMDVDTDPQIMM 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LAK+  +   R+ +   N     I +    V    +   +  ++     
Sbjct: 185 FSATTSSQLNLLAKDILRKPKRIEVERANTTAQTIAHVLYPVDQERKTELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +ATDVA
Sbjct: 245 KQVLVFVNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKARVMVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE   +++   P F +  +   +   +         +     ++ 
Sbjct: 365 QRIRRIELAGYEPKQRESYIEKLNSKPAFKN--RQGRRNNPNQSATDQGSAERRLAMVKR 422

Query: 424 HRAG 427
            +A 
Sbjct: 423 LKAR 426


>gi|303319503|ref|XP_003069751.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|142985565|sp|Q1DTB3|FAL1_COCIM RecName: Full=ATP-dependent RNA helicase FAL1
 gi|240109437|gb|EER27606.1| Eukaryotic translation initiation factor, putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320040787|gb|EFW22720.1| ATP-dependent RNA helicase FAL1 [Coccidioides posadasii str.
           Silveira]
          Length = 399

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+ + +++Q   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFDDMHLKENLLRGIYAYGFESPSAIQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  +     V    CIGG +V  + R 
Sbjct: 86  VID------TALRETQALVLSPTRELATQIQNVIMAVGDYMNVQCHACIGGTNVGDDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   H+K +VLDEAD++L  GFR+ I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   + ++   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|313667868|ref|YP_004048152.1| ATP-dependent RNA helicase [Neisseria lactamica ST-640]
 gi|313005330|emb|CBN86763.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
          Length = 457

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 135/414 (32%), Positives = 223/414 (53%), Gaps = 8/414 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY   T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFEAIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAA 418
           + E    +E    R  ++    P   ++ +  ++   +       K+   + AA
Sbjct: 373 LIE---RIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESAKAQREKNTRPENAA 423


>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
 gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO1]
          Length = 482

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDTLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|261401858|ref|ZP_05987983.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
 gi|269207983|gb|EEZ74438.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria
           lactamica ATCC 23970]
          Length = 457

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 135/414 (32%), Positives = 223/414 (53%), Gaps = 8/414 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY   T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALALQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNIHLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFEAIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK---KMVDVLLAKHDPEKIAA 418
           + E    +E    R  ++    P   ++ +  ++   +       K+   + AA
Sbjct: 373 LIE---RIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESAKAQREKNTRPENAA 423


>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
 gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
          Length = 416

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 122/389 (31%), Positives = 183/389 (47%), Gaps = 5/389 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     +  AL E GY   T VQ   +   L  KD+L SA TG+GK+ AF L  
Sbjct: 2   IKTFADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  E   L   T   V    GG+S     
Sbjct: 62  LQHLD-DFPRRDPGPA-RVLILTPTRELAIQVADEARELAKYTHHKVFTITGGISYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILARTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++  +FSAT     +     +   +  ++      R+   I               ++ 
Sbjct: 180 RKQTFLFSATLEGRGVDGFTADLLNEPAKIVAEPSRRERKKITQWYHRADSLPHKIELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  +  + AIVF  TR  ++     L         L GE+ Q+ R+NA+   RDG+  V
Sbjct: 240 SILTNQTERAIVFVKTRERLAELRGHLETAKISCAWLQGEMPQESRNNAISRFRDGKVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q+  E
Sbjct: 300 LIATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQKMME 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI 386
           R+ R             VE ++    + +
Sbjct: 360 RVGRYVKEEDEIIKERFVEGLKPTHKKAV 388


>gi|37521894|ref|NP_925271.1| ATP-dependent RNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212893|dbj|BAC90266.1| gll2325 [Gloeobacter violaceus PCC 7421]
          Length = 384

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 187/369 (50%), Gaps = 7/369 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + G+   T +Q   + P L  +DVL  A TGSGKT AF L +  
Sbjct: 2   TFADLQLHPDLVRAVEQLGFTQPTPIQTLAIPPALAGRDVLACAMTGSGKTAAFLLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+A+     P S   AL + PTRELA Q+   L  L   + +  A  IGGVS   + R 
Sbjct: 62  QLIAQ-----PRSTTRALVLTPTRELAGQIEMHLGQLARYSALRGASIIGGVSPEPQARA 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
              G  +++GTPGRL DH       +++L+ +VLDEAD ML++GF  DI  IL  +  +R
Sbjct: 117 FHKGVEVLIGTPGRLLDHFDQPYARLANLEILVLDEADRMLEMGFLPDIRRILRHTGHRR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  LA    ++ V +N   +      I +    VA + +   ++ +L 
Sbjct: 177 QTLFFSATMPGPIAKLATEILRNPVTLNQERKAAPAVGITHSVYPVAQNLKSKFLLELLE 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  IVF  T+   +R ++ L++       + G  SQ +R+ AL   + G+ RV +A
Sbjct: 237 REGMRQVIVFTRTKHRANRLSEYLSKARISCERIHGNRSQGQRTEALAGFKSGKYRVLVA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+  L  V++ ++    E+ +HR GRT RA R G +   +    + +   + 
Sbjct: 297 TDIASRGIDIEALGHVVNFDVPQAAEDYIHRVGRTARAERTGDAFTFVSPEEEDQLRAIE 356

Query: 361 REANVSVVW 369
           R     +  
Sbjct: 357 RAIGKRLPR 365


>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 196/419 (46%), Gaps = 10/419 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +    GGVS            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARELARHTSLDITTITGGVSYINHAEIFNTNQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +R+ L+F
Sbjct: 128 DMVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFASDIETVSAETRWRRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+         +   +      A   R+      +    A S +    +         
Sbjct: 188 SATLESDAVHDFADRLLNDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLCSLLRQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F   R  V      L +   Q   L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VTKSVIFVRKRERVHELVTWLHQAGIQACFLEGEMVQAKRNEAIKRMLDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE- 362
           AARG+D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I  + Q    ++ R  
Sbjct: 308 AARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYV 367

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  VV E  P  +A   ++  +  +            ++KK V   +   D + +
Sbjct: 368 QEPLKSRVVDELRPETKAPSLKNKGKPSKKVQAKRAQKKADEQKKKVKTKVRHRDSKNV 426


>gi|22328183|ref|NP_191975.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|30678703|ref|NP_849535.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75330763|sp|Q8RXK6|RH8_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|19423939|gb|AAL87312.1| putative RNA helicase [Arabidopsis thaliana]
 gi|21280839|gb|AAM45033.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332656515|gb|AEE81915.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
 gi|332656516|gb|AEE81916.1| DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]
          Length = 505

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+         A+ I PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 193 IDQDNNVI------QAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 246

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 247 YQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQ 306

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      +  +   +N+  E             V    + + +  +   
Sbjct: 307 ILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGI-TQFYAFVEERQKIHCLNTLFSK 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 366 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 425

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 426 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 485

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 486 ELGTEIKQIPPHIDQAI 502


>gi|91206663|sp|Q2UAK1|FAL1_ASPOR RecName: Full=ATP-dependent RNA helicase fal1
 gi|83771282|dbj|BAE61414.1| unnamed protein product [Aspergillus oryzae]
          Length = 398

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 25  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 85  VID------TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 139 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 199 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 259 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 378

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 379 ELYYSTQIDEMPM 391


>gi|328849915|gb|EGF99087.1| hypothetical protein MELLADRAFT_50777 [Melampsora larici-populina
           98AG31]
          Length = 395

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +   +    +   +++Q+  + P  + +DV+  AQ+G+GKT  F +++  
Sbjct: 23  TFDSLGLKDDLLRGIYAYNFEKPSAIQQRAILPITKGRDVIAQAQSGTGKTATFSISILQ 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++  +           AL ++PTRELA Q+   +  L     +    CIGG S+  + R 
Sbjct: 83  SIDTQ------IRETQALVLSPTRELATQIQSVILALGDYMNIQCHACIGGTSIGEDIRK 136

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+LGF+D I  +    P + 
Sbjct: 137 LDHGQHVVSGTPGRVYDMIRRRNLRTRNIKMLVLDEADELLNLGFKDQIYDVYRYLPPQT 196

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 197 QVVVLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T+ + E  F V ++ G++ Q+ER   +   R+G +RV I
Sbjct: 257 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMGEFRNGTSRVLI 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 317 TTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 376

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    E +
Sbjct: 377 EQYYSTQIDEMPVNIGEVV 395


>gi|226315242|ref|YP_002775138.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226098192|dbj|BAH46634.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 575

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 147/573 (25%), Positives = 246/573 (42%), Gaps = 36/573 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +AL   G    T +QE  +   L  KDV+  AQTG+GKT+AF L +      + 
Sbjct: 12  IHKELIDALQANGITEPTPIQEKAIPVVLEGKDVIAQAQTGTGKTLAFVLPILENADPQ- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                A+   AL + PTRELA+Q+  E++ L  K   +  +   GG  V+++ R L+   
Sbjct: 71  -----ATHVQALILTPTRELALQITAEVKKLTEKLEDIQVLAVYGGQDVNQQLRKLKGKI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+ TPGRL DH+R   +++S +   VLDEAD+ML +GF  ++E I+ ++P +++ L+F
Sbjct: 126 HVVIATPGRLLDHLRRGTIDLSQVSMFVLDEADQMLHMGFLPEVEDIMANTPFEKQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  LAK + +    + +  +     DI   AV      +   + ++L      
Sbjct: 186 SATMSEQVQALAKRFMQKPENIKVQGKRITLDDIRQIAVETTDRAKQATLCSLLDEQRPF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC T+   S+    L    +    L G+LSQ +R + ++  R+ R +  +ATDVAA
Sbjct: 246 LAVIFCRTKRRASKLNAELQGLDYMSDELHGDLSQAKREDVMKRFREARIQYLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + ++ +HR GRTGRA  KG +  ++      +   + +  N+
Sbjct: 306 RGLDVEGVTHVFNYDIPEDVDSYIHRIGRTGRAKEKGTAFTLVTAKDWGQLREIEQGINL 365

Query: 366 SVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           S+        E    +++  +R   +       +    K       +        G  R 
Sbjct: 366 SLERREMDRGEPGDQKKQKPERERAEKADRQGDKQGRGKGKSAEGREQGSRGRRDGDGRR 425

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
              G  +         V GR   +   R    GG  R    GS     + G     E + 
Sbjct: 426 QAKGGGSERNSGKRERVEGRFEGKAKGRDHTAGGFERKPKDGS---RATTG---GFEYKP 479

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG---VDLLRRTVKLDKGIQLKYLGGEK 540
                    G +R+                  DG        R  K   G +     G K
Sbjct: 480 KNGNRATIGGFDRK----------------PKDGNRAAGGFDR--KPKDGNRAAGGTGHK 521

Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           P      +SGF  K+S         +   A  N
Sbjct: 522 PKEGNRAASGFDRKSSGSSKKPVSAQRSSARPN 554


>gi|297620744|ref|YP_003708881.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
 gi|297376045|gb|ADI37875.1| ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU 86-1044]
          Length = 439

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 139/449 (30%), Positives = 224/449 (49%), Gaps = 20/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+   + +AL+  GY + T +Q   +   ++  D+  SAQTGSGKT AF L    
Sbjct: 2   TFDALNLHSDLLKALNAAGYKSPTEIQCKAIPKAVKGFDLRASAQTGSGKTAAFLLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERR 119
             +A   +  P   P  L ++PTRELA+Q+  + +        V +VCI G V  H ++R
Sbjct: 62  HCVANPRK--PTVGPRVLILSPTRELAMQIATQADKYSKFLNRVKSVCISGGVPYHVQQR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    I++ TPGRL D+I  K +N+S ++ +VLDEAD MLD+GF + +E I  ++P  
Sbjct: 120 KLRRPYEILIATPGRLIDYINQKAINLSAIEILVLDEADRMLDMGFIEPVEKIAAATPSS 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           R+ L+FSAT+  ++  L+     + + + I SE  +H +I  +   V     ++  + +I
Sbjct: 180 RQTLLFSATMQGSVLNLSNRLLNEPMDIVIHSEKTKHENITQKLHYVDGLQHKNQLLEHI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K+AIVF ST+   S+    L +      AL G++SQ++RS  +  +R G+ +V 
Sbjct: 240 LNDDVVKHAIVFTSTKRHASQLVFELHDKGLLAGALHGDMSQRQRSRTIAQLRTGKIKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ +L  N E+ +HR GRTGRAG  G ++           ++
Sbjct: 300 VATDVAARGIDVQNITHVINFDLPRNVEDYVHRIGRTGRAGAAGTALSFASGKDTSLVKK 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +       +       +E             P+  +      K+  +    KH  +K +A
Sbjct: 360 IEEYTGQPIDVAVVAGLEP-----------KPIKTEHKNKPAKRPANKWKGKHRHKKPSA 408

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           G       G    E  T  S      R R
Sbjct: 409 G---RAFKGSQQQERPTQTSPSWKGKRGR 434


>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 522

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 186/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ + + L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQENVFMYSRHLPLNSAVVFGGVKINPQMQRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL +E
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQE 364


>gi|121635112|ref|YP_975357.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
 gi|120866818|emb|CAM10576.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
          Length = 483

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 227/443 (51%), Gaps = 11/443 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 39  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 98

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GG+++ ++  DL+ G  I
Sbjct: 99  TSPAMHPVRMLVLTPTRELADQIDQNVQSYIKNLPLRHTVLFGGMNMDKQTADLRAGCEI 158

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   PK+R+ L+FSA
Sbjct: 159 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPKQRQTLLFSA 218

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 219 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTIQKRNLLERLIVDLHMNQV 278

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 279 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 338

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 339 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 398

Query: 368 VWEPAPSVE-------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + E     E         +    +  +++P   +  +    +       +       A  
Sbjct: 399 LIERIEGFEPQWWEQGGAKPEKTE--MREPRQRNRYESARAQREKNTRPETTANDAGAAC 456

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
            +I      +  E    +L+  R
Sbjct: 457 GKIAGRSRRSRREHRTCALLQPR 479


>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
 gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 502

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 198/363 (54%), Gaps = 2/363 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  ++++ GY   T +Q   +   L  +D++  AQTG+GKT AFGL +   L+ + 
Sbjct: 21  LSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEMLMKQA 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +       L +APTREL  Q+G  L     KT + +   +GG S+++++  L+ G  
Sbjct: 81  DRPA-NRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLEKGTD 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I    +++S +  +VLDEAD+MLDLGF  D+  I    P KR+ L+FS
Sbjct: 140 ILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQTLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAK 245
           AT+  AI+ LA N+  D ++V +    +    ++     VA  + + + +   L  +   
Sbjct: 200 ATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNENPDG 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+    +  K L    F+V ++ G  SQ +R  AL+  +DG  +V +ATDVAA
Sbjct: 260 RSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  R    + +   +
Sbjct: 320 RGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIEKLMKI 379

Query: 366 SVV 368
            + 
Sbjct: 380 DIP 382


>gi|54296291|ref|YP_122660.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
 gi|53750076|emb|CAH11468.1| hypothetical protein lpp0320 [Legionella pneumophila str. Paris]
          Length = 414

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 190/368 (51%), Gaps = 2/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A+SE GY N TS+Q   +   L   D+L SAQTG+GKT +F L +      +   
Sbjct: 10  EPLNRAVSELGYTNPTSIQLKAIPLILNGHDLLGSAQTGTGKTASFVLPILQKASQQTQ- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  +    L + PTRELA+Q    +        +  AV  GGV  H + + L +G  I+
Sbjct: 69  -TSRNRAKVLILTPTRELAIQAHESIIQYGKYLTLRSAVIYGGVKSHNQIKQLDSGLEIL 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  +   +    +  +VLDEAD MLD+GF  DI+ I+   P KR+ L+FSAT
Sbjct: 128 VATPGRLLDLYQQGAVKFDEIDTLVLDEADRMLDMGFIHDIKKIIKLLPLKRQNLLFSAT 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +P + TLA+N    AV ++IA  N     I      V  + +   + ++L  +     +
Sbjct: 188 FTPEVRTLARNILNKAVEIDIAPRNTAVKTIKQTVYSVDGNHKLALLSHLLHKNNWGQTL 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+   ++  K LAE     VA+ G  SQ +R+ AL   + G+ +  IATD+AARGI
Sbjct: 248 VFSRTKHGANKLVKQLAESQIYSVAIHGNKSQAQRTKALADFKSGKVQTLIATDIAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L  V++ +L   PE+ +HR GRTGRAG  G++V ++     +    + +  N  + 
Sbjct: 308 DIEKLACVVNFDLPHVPEDYVHRIGRTGRAGASGLAVSLVSTEEIKLLLSIEKLINQKLE 367

Query: 369 WEPAPSVE 376
                  E
Sbjct: 368 RIKIKDFE 375


>gi|194761692|ref|XP_001963062.1| GF15754 [Drosophila ananassae]
 gi|190616759|gb|EDV32283.1| GF15754 [Drosophila ananassae]
          Length = 460

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 61  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 120

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 121 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 174

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 175 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 234

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 235 ILLFSATFPLTVKNFMEKHIREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 293

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 294 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 353

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 354 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 413

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 414 ELGTEI--KPIPKV 425


>gi|149639330|ref|XP_001510706.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46,
           partial [Ornithorhynchus anatinus]
          Length = 974

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 129/559 (23%), Positives = 249/559 (44%), Gaps = 26/559 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 326 ILNSLRKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 384

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 385 EGEGPIAVIMTPTRELALQITKECKKFSKALGLRVVCVYGGTGISEQIAELKRGAEIIVC 444

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 445 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 504

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T   A+  LA+      V V +   +   SD++ + +++   ++   ++ +   Y  + +
Sbjct: 505 TFPRAMEALARRILNKPVEVQVGGRSVVCSDVEQQVIVIEEENKFLKLLELLGHYQESGS 564

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   + G  ++ +AT VAAR
Sbjct: 565 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKSGTCKLLVATSVAAR 624

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 625 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGHAFTFITEDQARYAGDIIKALELS 684

Query: 367 VVWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               PA         +  ++ + + I +   F       ++    +   +   +K A G 
Sbjct: 685 GTAVPADLEKLWSDFKDQQKAEGKTIKKSSGFSGKGFKFDETEQALANERKKLQKAALGL 744

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLSV 473
                       +    S+ + + R +D +                           ++ 
Sbjct: 745 QDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTSSVPVPTAGNAEKLEIAKRLALRINA 804

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKG 530
                AEA+ +M     ++ +   +I    + P ++   ++    + +   +    +DK 
Sbjct: 805 QKNLGAEAQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPIDKQ 859

Query: 531 IQLKYLGGEKPDFRGYKSS 549
            + K  GG+   F+ Y+  
Sbjct: 860 EEEKQEGGQNESFKRYEEE 878


>gi|327278500|ref|XP_003224000.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like [Anolis
           carolinensis]
          Length = 1030

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 219/472 (46%), Gaps = 11/472 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 381 ILNSLKKHGYEKPTPIQAQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LE 439

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      GV V    GG  +  +  +L+ GA I+V 
Sbjct: 440 EGEGPIAVIMTPTRELALQITKECKKFSKTLGVRVVCVYGGTGISEQIAELKRGAEIIVC 499

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 500 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 559

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T   A+  LA+      + V +   +   SD++   +++   ++   ++ +L +   + A
Sbjct: 560 TFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQNVIVIEEENKFLKLLELLGHFQEQGA 619

Query: 248 -IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   + G  ++ +AT VAAR
Sbjct: 620 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKSGVCKLLVATSVAAR 679

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 680 GLDVKHLMLVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 739

Query: 367 VVWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               P+         +  ++ + + I +   F       ++    +   +   +K A G 
Sbjct: 740 GTPVPSELEKLWNDFKDQQKAEGKTIKKSSGFSGKGFKFDETEEALANERKKLQKAALGL 799

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
                       +    S+ + + R +D + +             +    ++
Sbjct: 800 QDSDDEDTAVDIDEQIESMFNSKKRVKDMASSGGTSNVPAPTAGNAEKLEIA 851


>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 540

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 189/371 (50%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + ++++G+   TS+Q       L  +D++  A TGSGKT+++ L     + ++ 
Sbjct: 89  FPEYVLKEITKQGFNEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIVHINSQ- 147

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S    P+AL +APTRELA Q+ +  +     +G+      GG     + RDL +G  
Sbjct: 148 PKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDSGVE 207

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 208 IVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 267

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           AT    +  LA+++ KD  ++N+ S     N     I          ++ + ++  +   
Sbjct: 268 ATWPKEVKNLAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKENKLSTLLKEIMAE 327

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 328 SENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 387

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +      N   +A  L   
Sbjct: 388 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNSNKANDLIQV 447

Query: 360 FREANVSVVWE 370
            +EAN  +  +
Sbjct: 448 LKEANQVINPK 458


>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 497

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ + GY N T +Q   + P L  +D+L  AQTG+GKT AF L +   L    
Sbjct: 8   LSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQRLAETG 67

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           D  +     A    AL + PTRELA Q+G  +        +   V  GGV+ +R+   L+
Sbjct: 68  DGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGRHLPLRNTVIFGGVNQNRQVDALR 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    +++  L+  VLDEAD MLD+GF  DI  I+ + P +R+ 
Sbjct: 128 RGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRMLDMGFIHDIRKIVAAVPSERQT 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I +LA    ++ V+V++  E+     ++    LV+  D+ + +  +LR  
Sbjct: 188 LLFSATMPGEIQSLAAGLLQEPVKVSVTPESTAAETVEQCVYLVSREDKQSLLTELLRDD 247

Query: 243 GAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+    R  K L++      A+ G  SQ  R  AL+  + G  RV +A+
Sbjct: 248 PEMAKVLVFSRTKHGADRVAKRLSKSNIPAQAIHGNKSQNARLRALESFKRGDTRVLVAS 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
           D+AARG+D+  L  V++ +L + PE  +HR GRTGRAG +G+++       +   R  ER
Sbjct: 308 DIAARGLDIDALSHVVNFDLPNEPETYVHRIGRTGRAGCEGVAMSFCADEERGYLRSIER 367

Query: 359 LFREANVSVVWEPAPS 374
           L  +    +   P P+
Sbjct: 368 LIDQLIPVIEDHPFPA 383


>gi|154285130|ref|XP_001543360.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
 gi|160385733|sp|A6QSQ0|FAL1_AJECN RecName: Full=ATP-dependent RNA helicase FAL1
 gi|150407001|gb|EDN02542.1| eukaryotic initiation factor 4A-12 [Ajellomyces capsulatus NAm1]
          Length = 450

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|124265824|ref|YP_001019828.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
 gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
           PM1]
          Length = 494

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 205/366 (56%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAE 65
           +   +  A++E GY+ +T +Q   +   L  +DV+ +AQTG+GKT AF L L    L  E
Sbjct: 26  LDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQKMLKHE 85

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL +APTRELA QV   ++     T +   V  GG+ +  +  +L+ G
Sbjct: 86  SSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTAELKRG 145

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL DHI  K  ++S ++ VVLDEAD MLD+GF  D++ IL   PK R+ L+
Sbjct: 146 VEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPKSRQTLL 205

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP I  LA +Y +D + V  A  N   S ++ R   V   D+ NA+  +LR    
Sbjct: 206 FSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQLLRTRAI 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF +++   +R  +       +  AL G+ SQ ER  AL   + G   + +ATDVA
Sbjct: 266 TQSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVDLLVATDVA 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V + ++  N E+ +HR GRTGRAG  G+++ ++ ++  R    + +   
Sbjct: 326 ARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLVSDIEKLIK 385

Query: 365 VSVVWE 370
             +  E
Sbjct: 386 KKLDIE 391


>gi|307319802|ref|ZP_07599226.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
 gi|306894533|gb|EFN25295.1| DEAD/DEAH box helicase domain protein [Sinorhizobium meliloti AK83]
          Length = 504

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 226/478 (47%), Gaps = 14/478 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + I   LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +
Sbjct: 1   MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+A+  R  P +   AL +APTREL  Q+   L+    K+ + + + +GGVS++++ 
Sbjct: 61  IEKLVADGRRPDPRN-IRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 EQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
            R+ L+FSAT+   I  LA  Y  D V+V ++   +    ++     V   D +   +  
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    +++F  T+    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 240 TLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L   P+  +HR GRT R GR G+++     +  R   
Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLR 359

Query: 358 RLFREANVSVVWE--PAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + +   + +      AP+ +A   +    R    P      +G+          +  P+
Sbjct: 360 DIEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNAQPRGNGAGQRQGGPRRDRPQ 419

Query: 415 KIAAG-------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           + AA         LR  R+     +         GR     + +A K  G       G
Sbjct: 420 RQAAAGGFAGDELLRDERSHERRDQRAVGHGPADGRPEGHRNHKAQKHHGRPGPQQAG 477


>gi|319653101|ref|ZP_08007203.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
 gi|317395022|gb|EFV75758.1| hypothetical protein HMPREF1013_03818 [Bacillus sp. 2_A_57_CT2]
          Length = 463

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 215/421 (51%), Gaps = 20/421 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F  +   + +   L   G    T +QE  +   +  +D++  AQTG+GKT AF L +
Sbjct: 1   MQDFLTLGISKKLTNILLSHGIGKPTPIQEQAIPAVMEGRDIIAQAQTGTGKTFAFILPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              L  +      A    AL + PTRELA+Q+  E++ L A    +  +   GG  V ++
Sbjct: 61  LEKLDPD------AVHIQALIVTPTRELALQITDEVQKLTAGDDDLEVLAVYGGQDVDKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+    IVVGTPGRL DHI+ K +++S    +VLDEAD+ML +GF D++E I+  +P
Sbjct: 115 LNKLKKKVQIVVGTPGRLLDHIKRKTIDLSQADFLVLDEADQMLHIGFLDEVEDIIKETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ ++FSATI   I  LA+ + K+   + I         +   A+      +   ++ 
Sbjct: 175 GKRQTMLFSATIPAEIRNLARKHMKEPEYMQIEKTQGPAQSVKQIAIHTIDRAKQATLMQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H    A++FC T+  VS+   VL  + FQ   L G+LSQ +R   ++  RD   ++
Sbjct: 235 LIQTHRPYLAVIFCRTKRRVSKLNDVLKSNGFQCDELHGDLSQSKREQVMKRFRDAELQL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  +PE+ +HR GRTGRAG KGM++       +   E
Sbjct: 295 LVATDVAARGLDVEGVTHVFNYDIPLDPESYVHRIGRTGRAGMKGMAITFYSSADKPLLE 354

Query: 358 RLFREANVSVVWEPA--------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            + +  N+++  +          PS  + +    Q+I   P      + D ++  D    
Sbjct: 355 AIEKGLNITISKQNLGNSQERQKPSRSSEKNSQVQKI---PASSGRKKNDNREDADRKKT 411

Query: 410 K 410
           +
Sbjct: 412 E 412


>gi|188583653|ref|YP_001927098.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
 gi|179347151|gb|ACB82563.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
           BJ001]
          Length = 501

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 143/462 (30%), Positives = 211/462 (45%), Gaps = 23/462 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLQAVSAAGYTEPTPIQAQAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTMLETGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALIIGGVSFADQDAKLTRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHG 243
           AT+ P I  LA  +  +  RV +A  +   + I+ R V         R      I     
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPSSTATTIEQRLVATGAEGHEKRKILRHLIRSADE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+ +  V+   K LA H F V AL G++ Q+ R+ AL   R G   + +A+DV
Sbjct: 245 LQNGIIFCNRKRDVALLQKSLASHGFNVAALHGDMDQRARTAALDGFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  +  +  +R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRAGHAFTLASRADERSLAAIESLI 364

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
              + W          + D           D  +GDE +           EK +      
Sbjct: 365 GRPIEW---------LDGDL------STVTDDTEGDEPRRRRGTRRARGSEKGSERGA-- 407

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +A     E  +      GR      SR  + G       + 
Sbjct: 408 EKAAERTAERPSESRSRGGRRPASGRSRGEESGREPIREAEP 449


>gi|307191879|gb|EFN75298.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 627

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 10/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E +  +GY   T +Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 124 IQYFEEGNFPPYVMEGIRRQGYSQPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +  R S    P+AL +APTRELA Q+            V      GG     + 
Sbjct: 184 IVHIIHQ-PRLSNGDGPIALILAPTRELAQQIQEVANCFGESAAVRNTCIFGGAPKGPQA 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL  G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 243 HDLDRGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R++LM+SAT    +  LA+++  D   +NI S     +    + + V        +   
Sbjct: 303 DRQVLMWSATWPKEVRALAEDFLTDYTHLNIGSLTLSANHNITQIIDVCQEFEKDSKLFR 362

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   T+ +    +Q +++ G+ +QQER + LQ  R GR
Sbjct: 363 LLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFRSGR 422

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM+
Sbjct: 423 APILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMK 482

Query: 354 R--RAERLFREANVSV 367
                  + REA  +V
Sbjct: 483 HAGDLIEVLREAGQNV 498


>gi|254669919|emb|CBA04478.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis alpha153]
          Length = 457

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 138/443 (31%), Positives = 227/443 (51%), Gaps = 11/443 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++ ++ VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKVEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYVHRIGRTGRAGADGVAISLMDESEQKMFESIKELTGNKL 372

Query: 368 VWEPAPSVE-------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + E     E         +    +  +++P   +  +    +       +       A  
Sbjct: 373 LIERIEGFEPQWWEQGGAKPEKTE--MREPRQRNRYESARAQREKNTRPETTANDAGAAC 430

Query: 421 LRIHRAGLCAPEEITPVSLVSGR 443
            +I      +  E    +L+  R
Sbjct: 431 GKIAGRSRRSRREHRTCALLQPR 453


>gi|91087239|ref|XP_975511.1| PREDICTED: similar to eIF4AIII CG7483-PA [Tribolium castaneum]
 gi|270010579|gb|EFA07027.1| hypothetical protein TcasGA2_TC009998 [Tribolium castaneum]
          Length = 404

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 203/381 (53%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+N  + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+
Sbjct: 30  IEQFKNMHLKEELLRGVFAYGFEKPSAIQQRAIKPIIKGRDVIAQAQSGTGKTATFSIAI 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L  +            L ++PTRELAVQ+ + +  L     V    CIGG ++  + 
Sbjct: 90  LQSLDLQT------RETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P 
Sbjct: 144 RKLDYGQHVVSGTPGRVYDMIRRRALRTRSVKMLVLDEADEMLNKGFKEQIYDVYRFLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 204 STQVVLISATLPHEILEITSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ + E+ F V ++ G++ Q+ER N ++  R G++RV
Sbjct: 264 LYDTLTITQAVIFCNTKRKVDWLTEKMRENNFTVSSMHGDMPQKERDNIMKEFRSGQSRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 324 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 383

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 384 DIEQYYSTQIDEMPMNVADLI 404


>gi|307169387|gb|EFN62107.1| Eukaryotic initiation factor 4A-III [Camponotus floridanus]
          Length = 402

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N  +   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  
Sbjct: 30  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +            L ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 90  SLDTQ------VRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D I+ + L    +K +VLDE+DEML+ GF++ I  +    P   
Sbjct: 144 LDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPAT 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 204 QVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER N ++  R G++RV I
Sbjct: 264 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+S+  +  +  R    +
Sbjct: 324 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDI 383

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 384 EQYYSTQIDEMPMNVADLI 402


>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
          Length = 548

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 193/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STL-LAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L   + ++    +       AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAVQPNKVQTPNGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++  +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 361 LLRDIERLIKRELPRTVLSGFEPDPTI 387


>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 433

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 212/417 (50%), Gaps = 9/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   + +A+   GY NLT +Q+  +       D+L SAQTG+GKT AF L +   L    
Sbjct: 8   LSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPILDILAKNA 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N++ +  +   AL + PTRELA QV   ++       +   V  GG S+  + + L+ G 
Sbjct: 68  NEKPTTNTTIKALILTPTRELAAQVAANVKEYSQFLPLTSGVVSGGRSMDSQTKMLKVGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL +H+  + +++SH+K + LDEAD MLDLGF  DI+ ++++  +K + LMF
Sbjct: 128 DVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRMLDLGFLTDIQKLMEAIKQKHQTLMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  + TLAK        + I+ +N     +  +   V+ + ++  +  ++     K
Sbjct: 188 SATFSNKVKTLAKQILTTPKTLEISPQNSTAGKVKQQVYWVSETRKNELLSELIGVKNWK 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+ S +   K L     +     G+ +Q  R+ A+Q   +G  RV +ATDVAA
Sbjct: 248 QVLVFAGTKESANLLAKELQLDGIKTAVCHGDKTQGARNQAIQKFTEGSVRVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+PDL  V++  L    E+ +HR GRT RAG+ G +V ++    ++  + +      
Sbjct: 308 RGLDIPDLPYVVNFHLPFLAEDYIHRIGRTARAGKSGTAVSLVSPKDEQFLDNIETLIGR 367

Query: 366 SVVWEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  P  E         E+ + + L+   +      +  KM+++  AK+ P  I
Sbjct: 368 KFERIVYPGYEIDSSLPGYYEQSSDKPLKKSRY--KATQERNKMLEIQRAKNTPAAI 422


>gi|110634124|ref|YP_674332.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110285108|gb|ABG63167.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 477

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 195/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+ + GY   T +Q   +   L+ KDVL  AQTG+GKT +F L + +
Sbjct: 2   TFSDLGLSPKVLAAVGDAGYTVPTPIQAGAIPHALQGKDVLGIAQTGTGKTASFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV            + +A+ IGGVS   + + 
Sbjct: 62  RLERGRAR---ARMPRTLILEPTRELAAQVEENFVKYGKNHRLNIALLIGGVSFDEQEKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LERGADVLIATPGRLLDHHERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----VALSDRDNAIV 236
           + L FSAT+ P IT L + + +  VRV ++       +I  R V               +
Sbjct: 179 QTLFFSATMPPEITKLTEQFLQGPVRVEVSKPASTAVNITQRLVKSGSKPWAKREKLRDL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   KNAI+FC+ +  V+   + L  H F   AL G++ Q+ R   L+  R G+ +
Sbjct: 239 IRAEGDELKNAIIFCNRKTEVATLFRSLVRHEFDAGALHGDMDQRARMMMLENFRKGKLK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+DVAARG+D+PD+  V + ++ ++ E+ +HR GRTGRAGR G +  ++ +  ++  
Sbjct: 299 LLVASDVAARGLDIPDVSHVFNFDVPTHSEDYVHRIGRTGRAGRSGKAFTIVTRADRKYV 358

Query: 357 ERLFREANVSVVW 369
           + + +     + W
Sbjct: 359 DGIEKLIGQDIEW 371


>gi|330448509|ref|ZP_08312157.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492700|dbj|GAA06654.1| DEAD-box-containing ATP-dependent RNA helicase family member
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 432

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 198/390 (50%), Gaps = 4/390 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +   Q + +AL+E GY  LT VQ   +    R  D+L  AQTG+GKT AF L +   L+ 
Sbjct: 6   QGFSQDLVKALTEIGYEKLTPVQAKAIPQARRGADILALAQTGTGKTAAFSLPIIQKLI- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  +        AL +APTRELA Q+   +      T +      GG  +  + + L+ G
Sbjct: 65  DTPKSKSRFNVRALILAPTRELAEQIANNISDYTKYTSITCTAVFGGKKMSSQEKRLEQG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    +++++L+ ++ DEAD MLD+GF   I  ILD    K + ++
Sbjct: 125 VDILVATPGRLIEHMELNNVSLANLEFLIFDEADRMLDMGFIGAIRVILDDIRTKPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA +      R+ +  EN     + +    V    +   +  ++     
Sbjct: 185 FSATSSAQMNALAADILHKPQRITVTPENSTADTVSHVVYPVDEDRKTELLSELIGKKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + ++  K L     + V   G+ +Q  R  AL+  ++G+ARV +AT+VA
Sbjct: 245 RQVLVFVNYKETANQLVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ ++    E+ +HR GRTGRAG+KG ++  + +  +    ++ R   
Sbjct: 305 ARGLDIQNLPYVVNYDMPFLAEDYVHRIGRTGRAGQKGNAISFVSREEELTLVQIERLIG 364

Query: 365 VSVVWEPAPSVEAIRERDA--QRILQDPLF 392
             +        E  + RDA  +R+   P F
Sbjct: 365 QRIHRVQLIGYEP-KSRDALLERMHSKPAF 393


>gi|296194577|ref|XP_002745047.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 3
           [Callithrix jacchus]
          Length = 690

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 255 TFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 314

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 315 HMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 374

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 375 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 434

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 435 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 494

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 495 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRS 554

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 555 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 614

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 615 DNHLAQPLIK 624


>gi|296194575|ref|XP_002745046.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Callithrix jacchus]
          Length = 704

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 269 TFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 328

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 329 HMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 388

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 389 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 448

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 449 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 508

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 509 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRS 568

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 569 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 628

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 629 DNHLAQPLIK 638


>gi|296194573|ref|XP_002745045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Callithrix jacchus]
          Length = 724

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 289 TFEEANLCQTLSNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 349 HMMRDGVTASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 528

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 529 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRS 588

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P++
Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDPES 648

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 649 DNHLAQPLIK 658


>gi|209878704|ref|XP_002140793.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556399|gb|EEA06444.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 562

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 175/381 (45%), Gaps = 12/381 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  + P  + +AL   G+   T++Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 146 ITSFDESSFPDFLIDALYRAGFTEPTAIQVQGWPVALSGRDMIGIAETGSGKTLGFLLPS 205

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  R      P+ L +APTREL  Q+  +         +      GGV    ++
Sbjct: 206 MVHISAQ-PRLRYGDGPICLILAPTRELVEQIREQANRFGNILRIRNTAVYGGVPKRSQQ 264

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  I +  PGRL D +     N+S +  +VLDEAD MLD+GF   I  ++     
Sbjct: 265 ISLRNGVEICIACPGRLIDFLEEGCTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRP 324

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA------SENRQHSDIDYRAVLVALSDRD 232
            R+ L++SAT    +  LA++  ++               +                 R 
Sbjct: 325 DRQTLLWSATWPKEVQKLARDLCREEPVHINVGSIDTLKASHNIKQYIDVVDEYQKKGRL 384

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +N +        ++FC T+      T+ L    +  + + G+  Q+ER+  L   R+
Sbjct: 385 RMFLNQVMNSPTSKVLIFCETKKGADILTRELRLEGWPALCIHGDKKQEERTWVLNEFRN 444

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G + + IATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G+S+     + 
Sbjct: 445 GTSPIMIATDVAARGLDVKDITFVVNYDFPNQMEDYIHRIGRTGRAGASGVSLSFFTADK 504

Query: 353 QRRAERL---FREANVSVVWE 370
            R A  L    REA   +  E
Sbjct: 505 CRLANDLVRVLREAKQDIPPE 525


>gi|256083681|ref|XP_002578069.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663419|emb|CAZ34307.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 944

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 205/386 (53%), Gaps = 17/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +  + Q+I E ++   Y++ T VQ+  L     ++D++  AQTGSGKT AF L +
Sbjct: 158 IKSFNDVELHQIIKENVTRAQYIHPTPVQKYALPIIAAKRDLMACAQTGSGKTAAFLLPI 217

Query: 59  ASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + L  +N          S A  PLAL +APTREL+ Q+  E      ++ +   V  GG
Sbjct: 218 LNMLFEDNHCENSDASALSCAVCPLALILAPTRELSSQIYDEARKFSYRSNIKPCVVYGG 277

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            S+  + R+L +G +++V TPGRL D +    +++  ++  VLDEAD MLD+GF   I  
Sbjct: 278 ASILAQIRELSHGCNLLVATPGRLVDMVSRGKVSLEQIRFFVLDEADRMLDMGFEPQIRR 337

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++          + LMFSAT    I TLA+++    + + +      + +I    + VA
Sbjct: 338 IVEQHGMPPAGKRQTLMFSATFPKEIQTLARDFLHSYIFLAVGRVGSTNENIIQEVLNVA 397

Query: 228 LSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             D+ + +V +L+       A+VF  T+       K L +  F V ++ G+  Q ER +A
Sbjct: 398 DKDKPDMLVRLLQGKDPDGLALVFVETKRGADVLAKFLCQLNFPVTSIHGDRPQTEREHA 457

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           LQ  R GR  + IAT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G+ G +  
Sbjct: 458 LQSFRSGRTPILIATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRMGQPGSATS 517

Query: 347 VIP---QNMQRRAERLFREANVSVVW 369
                 QN+ R    L RE+  +V  
Sbjct: 518 FFSEKNQNVVRDLVELLRESKQAVPP 543


>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
 gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 446

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 195/376 (51%), Gaps = 4/376 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +  ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   
Sbjct: 3   FETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+A +     A  P AL + PTRELA QV   L        V  AV  GGV +  +   L
Sbjct: 63  LMAASSNVG-AGKPRALVLTPTRELATQVYDSLRGYAKYQRVSSAVIYGGVGMGNQLDVL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +++  PGRL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R
Sbjct: 122 RRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR 181

Query: 182 MLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             + FSAT +  I  LA  +      V +AS N     I +R   V +S +   ++++L 
Sbjct: 182 QTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLHLLA 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +A
Sbjct: 242 QDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q   +   ++ 
Sbjct: 302 TDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIV 361

Query: 361 REANVSVVWEPAPSVE 376
           R  +  +     P  E
Sbjct: 362 RLLDRDMDIRDVPDFE 377


>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
 gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
          Length = 527

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 152/563 (26%), Positives = 236/563 (41%), Gaps = 57/563 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                ++   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRSNHIRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILELLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSNEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQQL 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                    P  E         + +  L    I+  + K      A+ +  + A      
Sbjct: 366 --------LPRKELEGYAPTNVLPESKLDTRPIKPKKPKKPKKPKAEGENGQTA------ 411

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
                   E+         R RF  D++  K    S     G        G++   +AR 
Sbjct: 412 --------EKKNSDGNNKPRRRFNSDNKNDKGENKSGKAGAGKPK-----GNRDG-QAR- 456

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
                  +   +                    +      +      G   K  G  KP+ 
Sbjct: 457 ------SNGKQSGNK---------------PNNNQSGASKPGASKNGNGGKPSGNRKPNS 495

Query: 544 RGYKSSGFKSKNSQDGATKRFKR 566
              K +G K  N +    +R  R
Sbjct: 496 --GKPAGAKPSNGKPSGQRRSMR 516


>gi|112983588|ref|NP_001037347.1| vasa-like [Bombyx mori]
 gi|1944405|dbj|BAA19572.1| BmVLG [Bombyx mori]
          Length = 601

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 199/381 (52%), Gaps = 13/381 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 179 IESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPI 238

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +       +    P  + ++PTREL +Q+  E       + + VAV  GG +V 
Sbjct: 239 INMLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVR 298

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  ++  G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++  
Sbjct: 299 HQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 358

Query: 176 SPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++
Sbjct: 359 PTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEK 418

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            N++  ++  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  +
Sbjct: 419 RNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFK 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G +V     +
Sbjct: 479 SGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSD 538

Query: 352 MQ----RRAERLFREANVSVV 368
                     ++ R+A+ SV 
Sbjct: 539 QDLALVADLSKILRQADQSVP 559


>gi|48136057|ref|XP_393356.1| PREDICTED: eukaryotic initiation factor 4A-III-like isoform 1 [Apis
           mellifera]
          Length = 403

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N  +   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  
Sbjct: 31  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +            L ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 91  SLDTQ------VRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D I+ + L    +K +VLDE+DEML+ GF++ I  +    P   
Sbjct: 145 LDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPAT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 205 QVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER N ++  R G++RV I
Sbjct: 265 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+S+  +  +  R    +
Sbjct: 325 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDI 384

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 385 EQYYSTQIDEMPMNVADLI 403


>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 530

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 138/515 (26%), Positives = 222/515 (43%), Gaps = 31/515 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +A+ E GY   T +Q   + P L  +DVL  AQTG+GKT  F L +
Sbjct: 1   MIKFSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P +L +APTRELA QV    +     T +  A+ IGGVS   + 
Sbjct: 61  ITMLKRGRAR---ARMPRSLVLAPTRELAAQVAENFDTYAKYTKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L +S +K +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 NLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLDMGFIPDIERIFGLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P I  +   +  +  ++ +A        I    ++   S + +  +  
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTSETITQGVIMFKGSKKTSEAIEK 237

Query: 239 LRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +      A         I+FC+ +  V    K + +       + G+L Q  R   L  
Sbjct: 238 QKLLRDIIASEGANCRNGIIFCNRKIDVDAVAKSMTKAGLDASPIHGDLEQSHRMRTLAK 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  R  +A+DVAARG+D+P++  V + ++ S+ E+ +HR GRTGRAG+ G ++ +  
Sbjct: 298 FRDGTLRFLVASDVAARGLDIPNVSHVFNYDVPSHAEDYVHRIGRTGRAGKTGATIMICT 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPS----------VEAIRERDAQRILQDPLFLDSIQGD 399
              Q+  + + R   ++V     P            E +   D +            + D
Sbjct: 358 PRDQKNLDDIERLVEMAVPRMDLPGMPSAAPSAKPAEVVATIDDRPKRTRTRGGRGRKND 417

Query: 400 EKKMVDVLLA-------KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
            +K V   +        K D  K+ A    + +A     E     +  +   RF     A
Sbjct: 418 AEKAVTAPIETAQSEAPKQDTPKVEAPETHVPKAETPKVETTKVETPSAEPIRFEPTQHA 477

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPM 487
            +         + S       G         ++ M
Sbjct: 478 PRQDHSDNSKREQSRAGRNRGGRDNHDRGPKVVGM 512


>gi|49475813|ref|YP_033854.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238621|emb|CAF27864.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 460

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 213/406 (52%), Gaps = 9/406 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L+  G      +QE  +   L+  D+L  AQTGSGKT+AF L + S +LA  
Sbjct: 14  LSALLVKNLTIAGMSKPKPIQEQAIPMMLKGHDILGIAQTGSGKTLAFSLPILSQILALG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL +APTRELAVQ+   +  +   T +   +  GGVS  ++ + ++ G  
Sbjct: 74  DKRFPKTA-RALILAPTRELAVQIDETIRAVAKGTHLSTCLIFGGVSRLKQIKRMEAGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D IR K +++S  + ++LDEAD MLD+GF  DI  I+    + R+  +FS
Sbjct: 133 ILIATPGRLRDLIREKYVDLSQSRFLILDEADRMLDMGFIHDIRHIVKLLHQVRQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   ITTLAK    D V++ ++ +    ++I  +   V   ++ N +  +L      +
Sbjct: 193 ATMPKEITTLAKCLLNDPVKIEVSPQGTTAAEIAQKLYCVPTCEKKNVLGKLLTNPDFVS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+      T+ LA   + V  + G  SQ  R +AL+  R+   R+ +ATD+AAR
Sbjct: 253 VIVFTRTKYCADAVTRNLASRGYSVATIHGNKSQSARQSALKAFRERSVRILVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANV 365
           GID+P +  VI+ +L    E+ +HR GRTGR G  G ++ +  +   Q R   + R   +
Sbjct: 313 GIDIPGISHVINYDLPDEAESYVHRIGRTGRNGASGEALTLFDEGVEQMRLRAVERLICM 372

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +V E  P              + PL ++ I+ +  K      +K 
Sbjct: 373 RLVRETIP-------EQFAAFPEKPLVIEGIEKENIKGPHFRKSKR 411


>gi|114765123|ref|ZP_01444268.1| putative ATP-dependent RNA helicase protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114542527|gb|EAU45553.1| putative ATP-dependent RNA helicase protein [Roseovarius sp.
           HTCC2601]
          Length = 430

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 4/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL   G+   T +Q   +   L   DVL  AQTG+GKT+AFGL L   LLA+ 
Sbjct: 9   LAPTLSEALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDGLLAQP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +   AL +APTREL  Q+   L  L   T + V   +GG S++R+   L  G  
Sbjct: 69  GKPAPKT-VKALVLAPTRELVNQIADSLRQLTDGTKLRVGTVVGGQSINRQINFLSRGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +++S ++ +VLDEAD+MLD+GF   +  I       R+ ++FS
Sbjct: 128 ILVATPGRLIDLMDRKAVDLSTVRQLVLDEADQMLDMGFIHALRRIAPQLGTPRQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L+  Y  +  RV ++   +    I      V  + + + +  +L       
Sbjct: 188 ATMPKQMEELSSAYLTNPRRVQVSPPGKAADKITQSVHFVDKAGKPSKLRELLGRDDESL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L    +   ++ G  SQ +R  A++  RDG   V +ATDVAAR
Sbjct: 248 TLVFARTKHGAERLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V++ +L   P+N +HR GRT RAGR+G ++     +      ++ +   + 
Sbjct: 308 GIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQKLMKID 367

Query: 367 VVWEPAPSVEAIRE 380
           +   P  S +A  E
Sbjct: 368 I---PVASGDAPTE 378


>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase domain-containing protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 471

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 194/378 (51%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL+E+GY   T +Q+  +   L  +D+L  AQTG+GKT AFGL L  
Sbjct: 2   SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLLQ 61

Query: 61  TL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L  A  +  +    P AL +APTRELA QV   L        +  A   GGV +  +  
Sbjct: 62  HLGTASQEVRTGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQLD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V  PGRL DH+  + +++S ++ +VLDEAD MLD+GF   I+ IL   PK+
Sbjct: 122 ILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPKQ 181

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  + FSAT    I  LA  + ++  ++ +  +N     I +R   V    + + ++++
Sbjct: 182 NRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDGGRKRDLLLHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  +VF  T+    +    L +   +  A+ G  SQ +R  AL   + GR  V 
Sbjct: 242 LAQDSREQTLVFARTKHGSDKLAAFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ +L  VI+ +L    E+ +HR GRTGR G  G ++ ++ Q+  +    
Sbjct: 302 VATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLRA 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +     P  E
Sbjct: 362 ITRLLGRDMDIRDVPGFE 379


>gi|255077858|ref|XP_002502509.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
 gi|226517774|gb|ACO63767.1| DEAD/DEAH box RNA helicase [Micromonas sp. RCC299]
          Length = 790

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 238/511 (46%), Gaps = 26/511 (5%)

Query: 5   ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +N P   +   AL +RG   L  +Q ++L P L+ +DV+  A+TG+GKT+ F L +  +L
Sbjct: 136 DNFPLSDITKAALRKRGIETLFPIQASVLEPALQGRDVVGRARTGTGKTLGFSLPIIESL 195

Query: 63  LAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+   +R   +  P  + +APTRELA QV +E++       +      GGV++  + R L
Sbjct: 196 LSNPSNRTDRSRNPRCIVLAPTRELANQVEKEIQ--ATVPSLRTLCVYGGVAISNQERPL 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IVVGTPGRL D I+   LN+  ++  VLDEAD+ML +GF +D+E I++  P++R+
Sbjct: 254 RRGVDIVVGTPGRLIDLIQRGSLNLHDIEYCVLDEADQMLAVGFEEDVERIMEEIPEQRQ 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---I 238
             +FSAT+   +T + + Y  D V +++     Q        +  A S      +    +
Sbjct: 314 TFLFSATMPSWVTRITQKYLADHVTIDLVGSQEQKVADTIDVMSCACSHTSRTTILADLV 373

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y     AI F  T+      T  L   +   V   G+++Q +R   L+  RDGR  V 
Sbjct: 374 TVYGKGAKAICFTQTKREADEVTAALGRRMATEVLH-GDIAQAQRERTLKRFRDGRFSVL 432

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++LV+H EL  + E+ +HR GRTGRA +KG ++ +     + R   
Sbjct: 433 VATDVAARGLDITDVDLVVHYELPHDTESFVHRCGRTGRANKKGAAIAMYTPREKSRIRS 492

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + RE  V       P+   +    A++         SI+ D      +       EKI A
Sbjct: 493 IVRETGVKFRVINPPTAAEVMTSSAEQA--------SIEIDLVDDELLPYFTPTAEKILA 544

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                   G    E +                R+   G   +          ++ G+   
Sbjct: 545 AVKNGGADGRSESEVLAAALAALSGHTEPPPPRSMLTGDVGQTTM-------IARGNM-- 595

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLT 509
              R L+  +   S      +G IR+  D +
Sbjct: 596 ILPRDLLRAMSEVSRAAADGVGRIRILADNS 626


>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 686

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 189/371 (50%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I E   ++G+   T++Q   +   +  +D++  AQTGSGKT+A+       +  + 
Sbjct: 123 LPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAYVAPALVHIQHQ- 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+AL +APTRELA Q+ +       +T        GG     + RDL+ GA 
Sbjct: 182 ETVHRGDGPIALILAPTRELAQQIQQVANDFGQRTNTNNTCVFGGAPKGPQIRDLERGAE 241

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+S
Sbjct: 242 IVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIMGQIRPDRQVLMWS 301

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRYH 242
           AT    +  LA+ +  D +++NI S N   +    + V V        +   ++  +   
Sbjct: 302 ATWPKEVRNLAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQKLMKLLTEISAE 361

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +  + ++ V++ G+ SQQER   L   R+GR  + +ATD
Sbjct: 362 AETKTIVFVETKRRVDDITRSICRNGWRAVSIHGDKSQQERDYVLNAFRNGRQGILVATD 421

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+   G +  +   +   +A  L   
Sbjct: 422 VAARGLDVEDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTNSNANKAGDLINV 481

Query: 360 FREANVSVVWE 370
            REAN  +  +
Sbjct: 482 LREANQVINPK 492


>gi|156389356|ref|XP_001634957.1| predicted protein [Nematostella vectensis]
 gi|156222046|gb|EDO42894.1| predicted protein [Nematostella vectensis]
          Length = 794

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 186/373 (49%), Gaps = 9/373 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF + +   +  +     
Sbjct: 148 ILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHI-KDQPPLE 206

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ RE +       +      GG  +  +  +L+ GA I+V 
Sbjct: 207 REEGPIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRGAEIIVC 266

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N      +VLDEAD M D+GF   +  I+D     R+ +MFSA
Sbjct: 267 TPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQVMRIIDCIRPDRQTVMFSA 326

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T    +  LA+      + + +   +   SD++   V++   D+   ++ +L  +  + +
Sbjct: 327 TFPRQMEALARKILDKPIEIQVGGRSVVCSDVEQNVVVIEEDDKFLKLLELLGLYQEQGS 386

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + S     K L +  +  ++L G + Q +R + +   ++G  ++ IAT VAAR
Sbjct: 387 VLVFVEKQDSADSLFKDLLKRSYPCLSLHGGMDQFDRDSTIADFKNGVTKLMIATSVAAR 446

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R A  + +   + 
Sbjct: 447 GLDVKHLNLVVNYDCPNHYEDYVHRVGRTGRAGNKGTAYTFLTPEQGRFAIDVIKA--LE 504

Query: 367 VVWEPAPSVEAIR 379
           +   P P  E +R
Sbjct: 505 MAENPVP--EDVR 515


>gi|150391088|ref|YP_001321137.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950950|gb|ABR49478.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 549

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 137/567 (24%), Positives = 229/567 (40%), Gaps = 43/567 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I   L++      T VQ   + P L ++DV+  AQTG+GKT+AF L +   +  E 
Sbjct: 10  ISEEIENVLNKSDITEPTPVQLQAIPPLLAQRDVMAQAQTGTGKTLAFILPILERVNVEK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q+  E + L    G+ +    GG  V ++ R L+   H
Sbjct: 70  PTI------QALIITPTRELAIQITAETKKLAEVKGINILAAYGGQDVEQQLRKLKGSIH 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL DH+R K +N+  L  +VLDEAD+ML +GF  D+E I+   PK+R+ + FS
Sbjct: 124 IIIGTPGRLLDHLRRKTINLGKLSMLVLDEADQMLHMGFLRDVEDIMTHIPKRRQNMFFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TLA+ Y KD V++ + S+     +I    +      + + +  +   +    
Sbjct: 184 ATMPNQVRTLAEQYMKDPVQIQVQSKRVTLDEIRQVVIETTDRGKQDLLCQLFDEYNPFM 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+       + L    +    L G+L+Q +R   ++  +  + +  +ATDVAAR
Sbjct: 244 AIIFCRTKRRAIALNEALINLGYNSDELHGDLTQAKREKVMKAFKKSKIQYLVATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++  + E+ +HR GRTGRAG  GM++  +    +   + + +   + 
Sbjct: 304 GLDIEGVTHIFNYDIPQDGESYIHRIGRTGRAGETGMAITFMTSRDRDELKIIEKVIKMD 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +              D Q+     + LD  + D KK           +     F +    
Sbjct: 364 L--------------DVQKSKSGKIDLDEEEQDTKKSPKGRGNDKSKD-----FKKGKYG 404

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                           RDR  D             + KG         S  K        
Sbjct: 405 DKKGKPGDKKGRPGDKRDRPTDKKGRPGDKRDRPSDNKGRPGDKRDRPSDNKGRPGDNKG 464

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGY 546
               + G    + G               D         +             +P     
Sbjct: 465 RPGDNKGRPGDNKGR------------PGD------NKGRPGDNKGRPGDNKGRPGDNKG 506

Query: 547 KSSGFKSKNSQDGATKRFKRFKGASKN 573
           +    K +   +       +  G   N
Sbjct: 507 RPGDNKGRPGDNKGRPGDNKESGYKGN 533


>gi|168186565|ref|ZP_02621200.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
 gi|169295454|gb|EDS77587.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum C str.
           Eklund]
          Length = 371

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+N+   + I + LS  G  + T +QE  +    + KDV+  AQTG+GKT+AF L +
Sbjct: 1   MKDFKNLGISKNIIDVLSREGIKSPTPIQENSIEFIRKGKDVIAEAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E      ++    L + PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISLE------SNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    +++ TPGRL DH+    + +  LK +VLDEAD+ML +GF++++E I++ + K
Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIINYTSK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L FSAT++  +  LA  Y KD   V++ +E     +I    V      + +++  +
Sbjct: 175 KYQTLCFSATMNSEVKKLAYRYMKDPKVVSVKTEEITLKNIKQFVVETTDRRKQDSLCKV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G+L+Q +R   ++  ++   +  
Sbjct: 235 LDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCSKLHGDLAQSKRERVMKKFKNMDTQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  E 
Sbjct: 295 IATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLET 354

Query: 359 LFREANVSVVWEPAPS 374
           + +E   ++      S
Sbjct: 355 IEKEIKFTIPRRNVES 370


>gi|19113775|ref|NP_592863.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1352438|sp|Q10055|FAL1_SCHPO RecName: Full=ATP-dependent RNA helicase fal1
 gi|1103737|emb|CAA92238.1| ATP-dependent RNA helicase, eIF4A related (predicted)
           [Schizosaccharomyces pombe]
          Length = 394

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + +   +   GY   ++VQ   +    + +DV+  AQ+G+GKT  F + +
Sbjct: 20  VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++              AL ++PTRELAVQ+   +  L     V    CIGG SV  + 
Sbjct: 80  LQSIDLS------VRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G H+V GTPGR+ D IR + L   ++K ++LDEADE+L+ GF++ I  I    P 
Sbjct: 134 KKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPP 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  + VR+ +  +      +    + +     + + + +
Sbjct: 194 GTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCD 253

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC++R  V   T+ + E  F V ++ GE+ Q+ER   +Q  R G +RV
Sbjct: 254 LYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRV 313

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +     R   
Sbjct: 314 LICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILR 373

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 374 DIEQYYSTVIDEMPM 388


>gi|260223291|emb|CBA33706.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 608

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 121/384 (31%), Positives = 189/384 (49%), Gaps = 10/384 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     I +A+ E+GY   T++Q   +   L   D+L  AQTG+GKT AF L L   
Sbjct: 23  FEELKLAPAIVKAVREQGYETPTAIQAQAIPLVLEGHDLLGGAQTGTGKTAAFTLPLLHR 82

Query: 62  LLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L       +    +   AL + PTRELA QV   +        +   V  GGV ++ +  
Sbjct: 83  LSMSRSAQNKFGGTGIRALVLTPTRELAAQVEESVRQYGKYLQLSSTVVFGGVGMNPQIS 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGRL D  +   L++  ++ +VLDEAD MLD+GF  D++ +L   PK+
Sbjct: 143 KVKKGVDILVATPGRLLDLAQQGMLDLGQVQMLVLDEADRMLDMGFIHDVKKVLALVPKE 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT S  I  LA    K+   V +   N     I      V    +   + +I+
Sbjct: 203 KQSLLFSATFSDEIRELANGLLKNPQSVQVTPRNTTVQRITQVIHPVGRGKKKALLAHII 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF  T+   +   + L ++    +AL G  SQ  R+ AL   + G  R  +
Sbjct: 263 NEQNWSQVLVFTRTKFGANNVAEFLEKNGITAMALHGNKSQAARTQALSGFKSGDVRALV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ DL  V++ E+ +  E+ +HR GRTGRAG  G +V ++  + +   + +
Sbjct: 323 ATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGADGAAVNLVCLDEEGFMQDI 382

Query: 360 FREANVSVV------WEPAPSVEA 377
            R     +       + P P  +A
Sbjct: 383 ERFTKQKIEVKVVEGFAPEPGEKA 406


>gi|182419575|ref|ZP_02950823.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237668830|ref|ZP_04528814.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376610|gb|EDT74185.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum 5521]
 gi|237657178|gb|EEP54734.1| ATP-dependent RNA helicase DbpA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 480

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 198/383 (51%), Gaps = 9/383 (2%)

Query: 1   MKI-FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  F   NI + I +A+   GY   + VQE ++   +  KDV+V +QTGSGKT AF + 
Sbjct: 1   MKNEFSKFNISEEILKAVDGLGYKKPSEVQEKVIPEIILNKDVIVKSQTGSGKTAAFAIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +          +AP  L ++PTRELAVQV  +   +     +      G   +  +
Sbjct: 61  ICEKVDWNE------NAPQVLVLSPTRELAVQVSEDFVNIGRFKRIKSVAVFGKQPISEQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+   H+V GTPGR+ DHI    L++  +K  V+DEADEML++GF   +E ++   P
Sbjct: 115 ARALKQKTHVVCGTPGRVLDHIDRGSLDVKKIKYFVIDEADEMLNMGFIGQVEGVIRRLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KK+   +FSATIS  I TL + Y    V ++I  +   + +I++    V  ++R   +  
Sbjct: 175 KKKVTTLFSATISDEIRTLCEKYMDRPVDISIEKQKVVNDNIEHGLYYVDYNERFKLLNE 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + A++F  T+ +V      L    +    + G + Q+ER +A+   R G  R+
Sbjct: 235 LLICEKPETAVIFGRTKENVDEIYNFLKSKGYSCGRIHGGMLQKERLSAMDSFRKGEFRI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATDVAARGID+ ++  VI+ EL    E  +HR GR+GRAG+ G ++ +  ++  R  +
Sbjct: 295 LSATDVAARGIDIENITHVINFELPVEKEAYVHRIGRSGRAGKSGKAISICSKHGDRYLK 354

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
            +       +  +   + E I E
Sbjct: 355 NIEEYIGFGIPVKEHFTKEFISE 377


>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 726

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 116/388 (29%), Positives = 192/388 (49%), Gaps = 10/388 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 105 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPA 164

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R S    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 165 TVHINHQ-PRLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQA 223

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 224 RDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 283

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R++LM+SAT    +  LA+++  D +++NI S     N     I           + + 
Sbjct: 284 DRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSN 343

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+
Sbjct: 344 LLREIGKDRGSKMIIFVETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNGK 403

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 404 TMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 463

Query: 355 RAERL---FREANVSVVWEPAPSVEAIR 379
           +A+ L     EA  ++  + A    +I+
Sbjct: 464 QAKELISVLEEAGQAINPQLADLANSIK 491


>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
 gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
          Length = 420

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     D   +   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNDPSEI-KLAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  IVF S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KSIENFLEKEIYKIPIPE 374


>gi|296112376|ref|YP_003626314.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
 gi|295920070|gb|ADG60421.1| putative ATP-dependent DEAD/DEAH box RNA-helicase [Moraxella
           catarrhalis RH4]
          Length = 577

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 147/576 (25%), Positives = 251/576 (43%), Gaps = 38/576 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL++ GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   +   +
Sbjct: 25  LNKPILKALTKSGYTTPTPIQAKAIPHALNGRDLLLSAQTGSGKTAAFVLPVLDKM---S 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            + +      AL + PTRELA+QV   +         + +V  +GG     + R L+ G 
Sbjct: 82  RKPTIEKHVQALILTPTRELALQVQDSVRRYGDGMRNMFSVPLVGGAPYGGQLRALKKGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   +++S L  ++LDEAD MLD+GF DDI+ IL ++P+ R+ +M 
Sbjct: 142 QVIIATPGRLIDHMREGRVDLSKLDMLILDEADRMLDMGFADDIKEILQNTPQTRQTVMS 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  +A+++  +  +V+I  E+    +          + ++N ++ +L     K
Sbjct: 202 SATWDGAVGKIAESFTVNPEKVSIKVESAHIDESV--YYCDDFNHKNNILLQVLNNPKIK 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +T+ S  +    L E  F+   L G+L Q +R+  +  M+ G+  + +ATDVAA
Sbjct: 260 QAVIFAATKMSTEKLAAQLVEAGFKARYLHGDLPQGKRNRIVSDMKSGKCDLLVATDVAA 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GR GRAGR G++V +   +  R+ E + R    
Sbjct: 320 RGIDISAISHVINYDLPRQVEDYVHRIGRCGRAGRTGVAVNLCSIDDNRQLEHINRYLKR 379

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +       +E  R    +  +R        +  + D ++  +    K            
Sbjct: 380 QMSVSTIEGLEPRRNFGIQSQERRRGRSKSQNRTRQDGRQNFERTDHKFGSRN---RHEH 436

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            H        E       S   R  D++   +     R   K    +  + G      AR
Sbjct: 437 RHERSFEGKRERFEDRERSVNRRENDENHERRHSRSDRRFDKNRQGYYQADG-----TAR 491

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
                  R+               + T  +               D+  + K  G +   
Sbjct: 492 QDKKAYTRNFDRRDND-------RNDTRFDKPTK---KFGTQTDFDRPRRNKAFGDKVKP 541

Query: 543 FRGYKSSGFKSKNS-----------QDGATKRFKRF 567
             G+   G KS+                A +RF  F
Sbjct: 542 NTGFDKFGGKSRPKAVEEIFFAKRQDKKAKRRFGEF 577


>gi|45382259|ref|NP_990158.1| probable ATP-dependent RNA helicase DDX5 [Gallus gallus]
 gi|5114446|gb|AAD40318.1|AF158370_1 DEAD-box RNA helicase [Gallus gallus]
          Length = 595

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 186/378 (49%), Gaps = 8/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E +  + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 88  NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 148 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGV 206

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 207 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 266

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ K+ V +NI +     + +I     +    ++D+ ++ ++    +
Sbjct: 267 SATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMS 326

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 327 EKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 386

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 387 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLIS 446

Query: 360 -FREANVSVVWEPAPSVE 376
             REAN ++  +    +E
Sbjct: 447 VLREANQAINPKLLQLIE 464


>gi|74210167|dbj|BAE21355.1| unnamed protein product [Mus musculus]
          Length = 690

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 175 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 234

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 235 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 293

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 294 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 353

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 354 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 413

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 414 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 473

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 474 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 533

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 534 VLREANQAINPKLLQLVED 552


>gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
          Length = 496

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 133/406 (32%), Positives = 217/406 (53%), Gaps = 13/406 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ EA  +  + + T VQ   +   L+ +DV+  A+TGSGKT AF L +   LL    R
Sbjct: 71  PVLCEACKQLNWTDPTKVQIEAIPLALQGRDVIGLAETGSGKTAAFALPILQALLEHPQR 130

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L A  G+ VAV +GGV +  +   L    H++
Sbjct: 131 ------LFALVLTPTRELAYQIAEQFEALGACIGIKVAVIVGGVDMVTQALCLAKKPHVI 184

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH+      ++  LK +V+DEAD +LD+ F  ++  IL   P++R+  +FSA
Sbjct: 185 VATPGRLVDHLENTKGFSLRSLKYLVMDEADRILDMDFESEVNKILQVIPRERKTYLFSA 244

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +T L +   +D V+V ++S+ +    +    + +    +D  +V IL     K+ 
Sbjct: 245 TMTKKVTKLQRASLQDPVKVEVSSKYQTVDKLQQHYIFIPQKFKDCYLVYILNEMAGKSC 304

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF ST A+  R   +L    F  V L G++SQ +R  AL   +     + IATDVA+RG
Sbjct: 305 IVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKRLGALNKFKAKDRSILIATDVASRG 364

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN--V 365
           +D+P ++LVI+ ++ ++ ++ +HR GRT RAGR G+S+  + Q      +R+       +
Sbjct: 365 LDIPHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLGKQL 424

Query: 366 SVVWEPAPSVEAIRER--DAQRI--LQDPLFLDSIQGDEKKMVDVL 407
            +     P V ++ ER  +A RI  +Q     D  + ++K+  +  
Sbjct: 425 PLFKTEEPEVLSLLERVTEANRIAKMQVKELEDKKRTNKKRNREAQ 470


>gi|291614123|ref|YP_003524280.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291584235|gb|ADE11893.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 511

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ + GY   + +Q   +   L   D++ SAQTG+GKT AF L     L  E+
Sbjct: 25  LNPAILKAVQDAGYTVPSPIQAQAIPEALAGHDLMASAQTGTGKTAAFILPALQRLSVES 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P  L + PTRELA QV            V V   +GG+    + + L     
Sbjct: 85  AVRS--KGPRVLVLTPTRELAQQVSDAANKYGKNMRVKVVSILGGMPYPLQNKLLSGFVD 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DHI    ++ S L+ +VLDEAD MLD+GF DD+E I  ++P  R+ L+FS
Sbjct: 143 ILVATPGRLIDHIERGRIDFSRLEMLVLDEADRMLDMGFIDDVERIAAATPATRQTLLFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  LA+   K   R+++ S   +H +I+ R   +  ++ ++  + ++LR     
Sbjct: 203 ATLEGVIGNLAQRLLKSPKRISVTSAQAKHENIEQRLMYVDDMAHKNRLLDHLLRDVDLN 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +T+         L+       AL G+++Q+ER+  L  +R G  RV +ATDVAA
Sbjct: 263 QALVFTATKRDADSLADELSAAGHAAAALHGDMNQRERNRTLLNLRRGNVRVLVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ +L    E+ +HR GRTGR G  G++V           +++ R    
Sbjct: 323 RGIDVAGITHVINFDLPKFAEDYVHRIGRTGRGGASGIAVSFASNRDAMHLKKIERYTGQ 382

Query: 366 SVVWEPAPSVE 376
            +       +E
Sbjct: 383 PIKTHTVEGME 393


>gi|115437508|ref|XP_001217828.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
 gi|121734188|sp|Q0CAS8|FAL1_ASPTN RecName: Full=ATP-dependent RNA helicase fal1
 gi|114188643|gb|EAU30343.1| eukaryotic initiation factor 4A-12 [Aspergillus terreus NIH2624]
          Length = 399

 Score =  200 bits (507), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Anolis carolinensis]
          Length = 445

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 218/420 (51%), Gaps = 16/420 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +   +V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 16  KSFKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLAETGSGKTGAFALPIL 75

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    RF       AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +  
Sbjct: 76  QALLETPQRF------FALVLTPTRELAFQISEQFEALGSSIGVQTAVIVGGIDMMAQSL 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 130 ALAKKPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 189

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V I
Sbjct: 190 DRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQYYVFIPSKFKDSYLVYI 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G+++Q +R  +L   +     V 
Sbjct: 250 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKRLGSLNKFKAKARSVL 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R
Sbjct: 310 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 369

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L     +GD+K+  +      D E
Sbjct: 370 IEHLIGKKLPAFPTQEDEVMMLTERVAEAQRFARMEL---QQKGDKKRSREEANEPDDAE 426


>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Ailuropoda melanoleuca]
          Length = 455

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 124/425 (29%), Positives = 217/425 (51%), Gaps = 16/425 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPVFPTQEDEVMMLTERVTEAQRFARMELREH---GEKKKRTREDAGDNDDM 434

Query: 415 KIAAG 419
           + A G
Sbjct: 435 EGAMG 439


>gi|302308420|ref|NP_985329.2| AFL221Cp [Ashbya gossypii ATCC 10895]
 gi|299790624|gb|AAS53153.2| AFL221Cp [Ashbya gossypii ATCC 10895]
          Length = 557

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 192/379 (50%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + + E G+   T++Q       L  +D++  A TGSGKT+++ L  
Sbjct: 113 IRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 172

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 173 IVHINAQ-PLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQI 231

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 232 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 291

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++VNI S     +   + +          DR   
Sbjct: 292 DRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLVEVVSDFDKRDRLVK 351

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            + I         I+F ST+ +    T  L +  +  +A+ G+  QQER   L   R GR
Sbjct: 352 HLEIASKDKDSKIIIFASTKRTCDEITSYLRQDGWPALAIHGDKQQQERDWVLNEFRTGR 411

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  + 
Sbjct: 412 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKT 471

Query: 354 --RRAERLFREANVSVVWE 370
              +   + REA   +  +
Sbjct: 472 LGAQLISIMREAKQEIPQD 490


>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Callithrix jacchus]
          Length = 455

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREH---GEKKKRSREDARDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|209550473|ref|YP_002282390.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536229|gb|ACI56164.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 567

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 200/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + I   L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 1   MTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R         L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 61  IEKLLADERRPD-NRTTRTLILAPTRELVNQIAETLKKFIRKSHLRINVVVGGVSINKQQ 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL D I  + ++++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 LQLEKGTDVLVATPGRLLDLINRRAISLTTVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ ++FSAT+  AI  LA +Y  D V+V +    +    ++     VA  + +   +  
Sbjct: 180 KRQTMLFSATMPKAIADLAGDYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    AIVF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 240 SLTENPDGRAIVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  +   
Sbjct: 300 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 359

Query: 358 RLFREANVSVV 368
            + R   + + 
Sbjct: 360 DIERLMGIDIA 370


>gi|195146854|ref|XP_002014399.1| GL19172 [Drosophila persimilis]
 gi|194106352|gb|EDW28395.1| GL19172 [Drosophila persimilis]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|194859644|ref|XP_001969421.1| GG10095 [Drosophila erecta]
 gi|195473543|ref|XP_002089052.1| me31B [Drosophila yakuba]
 gi|190661288|gb|EDV58480.1| GG10095 [Drosophila erecta]
 gi|194175153|gb|EDW88764.1| me31B [Drosophila yakuba]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|157594|gb|AAA28603.1| RNA helicase [Drosophila melanogaster]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|24583281|ref|NP_723539.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
 gi|22946109|gb|AAN10728.1| maternal expression at 31B, isoform B [Drosophila melanogaster]
          Length = 428

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 29  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 88

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 89  IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 142

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 143 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 202

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 203 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 261

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 262 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 321

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 322 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 381

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 382 ELGTEI--KPIPKV 393


>gi|75061689|sp|Q5R6D8|DDX46_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|55731939|emb|CAH92678.1| hypothetical protein [Pongo abelii]
          Length = 1032

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 250/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  L +      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALVRRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSAPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQDGGQNESFKRYEEE 936


>gi|24583279|ref|NP_523533.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|41712743|sp|P23128|DDX6_DROME RecName: Full=Putative ATP-dependent RNA helicase me31b; AltName:
           Full=Maternal expression at 31B
 gi|15291637|gb|AAK93087.1| LD21247p [Drosophila melanogaster]
 gi|22946108|gb|AAF52881.2| maternal expression at 31B, isoform A [Drosophila melanogaster]
 gi|220954648|gb|ACL89867.1| me31B-PA [synthetic construct]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH + +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 436

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 136/444 (30%), Positives = 205/444 (46%), Gaps = 12/444 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A++ +GY N T +Q   +       D+L  AQTG+GKT AF L +  
Sbjct: 2   SFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIVQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  EN        P AL + PTRELA QV  ++     +  +   +  GGV++  +   
Sbjct: 62  ML-GENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIER 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL DH     +N+S +K +VLDEAD MLDLGF D I  +    P KR
Sbjct: 121 LHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIHKVAQYLPVKR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S +I  LA        R+ +A  N     +      +  S +   +  ++R
Sbjct: 181 QTLLFSATYSQSIKQLADELLNQPRRIEVARRNIAADAVTQAVYQIERSRKREMLSFLIR 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  TR    + T+ L     +  A+    SQ  R+  L   + G  RV +A
Sbjct: 241 TGRWNQVLVFARTRYGADKLTEELLLDGIKASAIHSNKSQSLRTRTLAEFKRGEFRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  V++ +L   PE+ +HR GRTGRAG  G+++ ++ +  Q   + + 
Sbjct: 301 TDVAARGLDIERLPHVVNYDLPQVPEDYVHRIGRTGRAGEDGVALSLVSREEQPLLQAIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    ++   P  ++    +  A+R ++     +S Q  EK        K      A   
Sbjct: 361 KLLKYAI---PRQTLAEFPQYAAKRSIE---VKESKQAKEKSKARKTREKLTQ---APEK 411

Query: 421 LRIHRAGLCAPEEITPVSLVSGRD 444
            R  R      E   P +   G  
Sbjct: 412 TRTSRRKKVVEERPAPKTGRRGAR 435


>gi|237713244|ref|ZP_04543725.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
 gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
           2a]
 gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 420

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGKHPEDAINCVIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I    
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYEDIMQIAKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   +   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNEPSEI-KLAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  IVF S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFMDEVPERVIVFASSKIKVKEVAKALKSMKLNVGEMHSDLEQAQRETVMHEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KSIENFLEKEIYKIPIPE 374


>gi|241948951|ref|XP_002417198.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640536|emb|CAX44790.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 399

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA+Q+   ++ L     +    CIGG +V  + + 
Sbjct: 87  VID------TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+   +  +   +  D V++ +  +    S I    V       + + + ++ 
Sbjct: 201 QVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQFYVQCEREDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+     + +  F VVA+ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNEFRRGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG ++ +I ++     + L
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVATLKDL 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EKYYSTKIKEMPM 393


>gi|149713746|ref|XP_001501494.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
           [Equus caballus]
          Length = 455

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 125/425 (29%), Positives = 218/425 (51%), Gaps = 16/425 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK     +  +D  
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREH---GEKKKRTREDVGDNDDT 434

Query: 415 KIAAG 419
           + A G
Sbjct: 435 EGALG 439


>gi|295660379|ref|XP_002790746.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226281299|gb|EEH36865.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 408

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|313682403|ref|YP_004060141.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155263|gb|ADR33941.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 417

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 200/377 (53%), Gaps = 5/377 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   I +A+ E GY + T +QE ++   L + D+L  AQTGSGK+ +F L +    L
Sbjct: 6   FSLLSP-IVQAVKESGYTHPTPIQEKVIPLVLEKNDILARAQTGSGKSASFVLPILH--L 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDL 121
               R        AL + PTREL +QV +  E +     +   V       S+  +   +
Sbjct: 63  WSLSRSEGKGKIKALILTPTRELTLQVAQAFESMGKHLPIKPKVLSIIGGESIGDQLYAI 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I+V T GR  D ++ K +N+SHL+  VLDEAD+MLDLGF +++E ILD+ P+KR+
Sbjct: 123 QQGCDILVATSGRFLDVLKKKQMNLSHLEFFVLDEADKMLDLGFAEELELILDAIPQKRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT  P + ++A     + + V + +E     +I  R + V   +R   + ++L  
Sbjct: 183 NLLFSATYPPKMESIASKITPNPIHVTLEAEMPTVQNIHQRVIEVNPENRGPLLRHLLNT 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF + + +         ++ F   + +G+L Q++R+  L+  +  + R+  AT
Sbjct: 243 EKWEQVLVFMANKRASDNIAAKFRKYGFSADSFNGDLLQEDRNYVLEQFKKKKIRILFAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ D+  V++ +L  +P + +HR GRTGRAG+ G+++  I    +     + +
Sbjct: 303 DIAARGLDIDDITCVVNFDLPRSPADYIHRIGRTGRAGKSGLAISFIGFAERDHFALIEK 362

Query: 362 EANVSVVWEPAPSVEAI 378
            + + +  E     E I
Sbjct: 363 RSKIKLPREQIEGFELI 379


>gi|297294301|ref|XP_002804411.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Macaca
           mulatta]
          Length = 705

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 270 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 329

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 330 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 389

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 390 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 449

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 450 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 509

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 510 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 569

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 570 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 629

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 630 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 677

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 678 TRKGKSSLNTAGFSSSQAPNPVDDES 703


>gi|225719342|gb|ACO15517.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++       +       L ++PTRELAVQ+ + L  L     V    CIGG ++  + R 
Sbjct: 91  SID------TSLRETQCLVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 145 LDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 205 QICLISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I
Sbjct: 265 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGQSRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 325 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 384

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 385 EQYYSTQIDEMPMNVADLI 403


>gi|109077270|ref|XP_001100045.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3
           [Macaca mulatta]
 gi|297294298|ref|XP_001099856.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1
           [Macaca mulatta]
          Length = 725

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 290 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 349

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 350 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 409

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 410 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 469

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 470 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 529

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 530 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 650 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 697

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 698 TRKGKSSLNTAGFSSSQAPNPVDDES 723


>gi|124430723|ref|NP_001037582.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
 gi|95102742|gb|ABF51312.1| DEAD box polypeptide 5 isoform 1 [Bombyx mori]
          Length = 539

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 195/392 (49%), Gaps = 16/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + +   GY   T +Q       +  K+++  AQTGSGKT+A+ L  
Sbjct: 106 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 165

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+ +        + V      GG     + 
Sbjct: 166 IVHINNQPP-IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 224

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 225 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA++Y  D +++NI S     + +I     +    +++N    
Sbjct: 285 DRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNV 344

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+      ++ +  + +  V + G+ +QQER   L   ++
Sbjct: 345 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 404

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S      + 
Sbjct: 405 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 464

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRER 381
            R+A+ L    +EAN  +    +P ++++ +R
Sbjct: 465 SRQAKDLVSVLQEANQII----SPQLQSMADR 492


>gi|39940710|ref|XP_359892.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
 gi|152032454|sp|A4QU31|FAL1_MAGO7 RecName: Full=ATP-dependent RNA helicase FAL1
 gi|145010887|gb|EDJ95543.1| eukaryotic initiation factor 4A-12 [Magnaporthe oryzae 70-15]
          Length = 401

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 28  TFESMALKESLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 88  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 142 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPAT 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 262 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 322 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 381

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 382 ELYYSTQIDEMPMNVADLI 400


>gi|326930919|ref|XP_003211585.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Meleagris
           gallopavo]
          Length = 597

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 186/378 (49%), Gaps = 8/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + E +  + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 90  NFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 150 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGV 208

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 209 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 268

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ K+ V +NI +     + +I     +    ++D+ ++ ++    +
Sbjct: 269 SATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMS 328

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 329 EKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 388

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 389 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLIS 448

Query: 360 -FREANVSVVWEPAPSVE 376
             REAN ++  +    +E
Sbjct: 449 VLREANQAINPKLLQLIE 466


>gi|238878985|gb|EEQ42623.1| eukaryotic initiation factor 4A-12 [Candida albicans WO-1]
          Length = 399

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA+Q+   ++ L     +    CIGG +V  + + 
Sbjct: 87  VID------TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+   +  +   +  D V++ +  +    S I    V       + + + ++ 
Sbjct: 201 QVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+     + +  F VVA+ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG ++ +I ++     + L
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEL 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EKYYSTKIKEMPM 393


>gi|261202786|ref|XP_002628607.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|225556973|gb|EEH05260.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus G186AR]
 gi|239590704|gb|EEQ73285.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis
           SLH14081]
 gi|239612419|gb|EEQ89406.1| eukaryotic initiation factor 4A-12 [Ajellomyces dermatitidis ER-3]
 gi|240277518|gb|EER41026.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H143]
 gi|325093598|gb|EGC46908.1| ATP-dependent RNA helicase FAL1 [Ajellomyces capsulatus H88]
 gi|327355221|gb|EGE84078.1| ATP-dependent RNA helicase FAL1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 399

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|195457392|ref|XP_002075549.1| GK21209 [Drosophila willistoni]
 gi|194171634|gb|EDW86535.1| GK21209 [Drosophila willistoni]
          Length = 457

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 58  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 118 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 171

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH K +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 172 YQKVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 232 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 290

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 291 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 350

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 351 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 410

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 411 ELGTEI--KPIPKV 422


>gi|195387443|ref|XP_002052405.1| GJ17531 [Drosophila virilis]
 gi|194148862|gb|EDW64560.1| GJ17531 [Drosophila virilis]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH K +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|164659183|ref|XP_001730716.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
 gi|159104613|gb|EDP43502.1| hypothetical protein MGL_2170 [Malassezia globosa CBS 7966]
          Length = 502

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 98/404 (24%), Positives = 183/404 (45%), Gaps = 11/404 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+ + + +QE  +   L  +DVL  A+ G+GKT A+ +     
Sbjct: 32  FEDFFLKRELLMGIFEAGFEHPSPIQEEAIPIALSGRDVLARAKNGTGKTAAYVIPTLER 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + ++        A+ + PTRELA+Q  +  + L    G+ + V  GG ++  +   L
Sbjct: 92  VNTKKNKI------QAVLLVPTRELALQTSQVAKTLGKHLGIEIMVSTGGTTLKDDILRL 145

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   PK+R+
Sbjct: 146 GQTVHILVGTPGRILDLASKGIADLSQCTTYVMDEADKLLSPEFTPVMEQLLGLLPKERQ 205

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +      +      +N+  E             V    + + +  +   
Sbjct: 206 VMLFSATFPLIVKDFKDKHMVKPYEINLMDELTLRGV-TQYYAFVEERQKVHCLNTLFSK 264

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 265 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCS 324

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 325 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHMGLAINLITYEDRFNLYRIEQ 384

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           E    V  +P P+    R   A  ++Q+    +    ++ K   
Sbjct: 385 ELGTEV--QPIPATIDKRLYVAPSLIQEAENRERDAQEQGKPTQ 426


>gi|158530232|gb|ABW71831.1| putative RNA helicase [Phytophthora infestans]
          Length = 544

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 186/376 (49%), Gaps = 9/376 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  + P+ + E +   G+   T +Q       L  +D++  + TGSGKT+AF L    
Sbjct: 142 SFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIV 201

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+     P   P+ L IAPTRELAVQ+  E     A + +      GGV    +  D
Sbjct: 202 HINAQ-PYLQPGDGPIVLMIAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIAD 260

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I + TPGR+ D +     N+  +  +VLDEAD MLD+GF   +  I+      R
Sbjct: 261 LRRGVEICICTPGRMIDMLSMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 320

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI- 238
           + LM+SAT    I  LA ++  D ++V + S +   +  I     ++    + +++ +  
Sbjct: 321 QTLMWSATWPKEIVALANDFLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHL 380

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +     I+FC T+      ++ L    +   A+ G  SQ+ER   L+  +DGR ++ 
Sbjct: 381 RDIYEGGRIIIFCETKRGADELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQIL 440

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  V++ ++  N E+ +HR GRT RAG KG S+     +   R   
Sbjct: 441 VATDVASRGLDIKDIRYVVNFDMPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAG 500

Query: 358 ---RLFREANVSVVWE 370
              ++  EA   V  E
Sbjct: 501 PLVKIMEEAEQEVPRE 516


>gi|145601979|ref|XP_001403327.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152013478|sp|A4QSS5|DBP2_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP2
 gi|145010431|gb|EDJ95087.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 548

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 193/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 124 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 184 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 242

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  +A ++ +D ++VNI S +   +  I     +V+ S++ + ++ 
Sbjct: 303 DRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIR 362

Query: 238 ILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +             ++F  T+      T+ L +  +  +++ G+  Q ER   L   + 
Sbjct: 363 HMEKVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKT 422

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++       
Sbjct: 423 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 482

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 483 SKQARDLLGVLQEAKQEI 500


>gi|307825386|ref|ZP_07655605.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307733561|gb|EFO04419.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 451

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 119/416 (28%), Positives = 198/416 (47%), Gaps = 30/416 (7%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+     I  +L + G+ + T +Q   L   LR KD+   AQTG+GKT  F LA    
Sbjct: 11  FSNLELSDSILRSLKDAGFNHCTPIQRQALPLSLRGKDIAGQAQTGTGKTATFLLATFQH 70

Query: 62  LLAEND----------------------RFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
           L+ + +                      +      P A+ +APTRELA+Q+ ++   L  
Sbjct: 71  LINDAEDDAEAQTNADIETEKTAPNVVAKSKQIKYPRAIILAPTRELAIQIHKDALQLGK 130

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
              + +A+  GG    ++   L++   I++GTPGR+ D  R     + ++K  V+DEAD 
Sbjct: 131 HLNLKLALIYGGTDYQKQLDSLKSNVDIIIGTPGRIIDFYRQNAFTLDNVKVTVMDEADR 190

Query: 160 MLDLGFRDDIEF--ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           M DLGF  DI F       P++R  ++FSAT+S  +T LA  +  + V + I +E     
Sbjct: 191 MFDLGFIKDIRFLLRRMPPPEQRLNMLFSATLSYKVTELAYEHMNNPVLIRIETEEVTSK 250

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            I   A   +   +   +V IL  H  + +I+F +T+    R    L  + ++  ALSG+
Sbjct: 251 AIQQSAFCPSNEQKIPLLVGILNQHQPQRSIIFVNTKRCAERLDDTLNANGYKTAALSGD 310

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           + Q +R   L   ++ +  + IATDVAARG+ + D+  VI+ +L  + E+ +HR GRT R
Sbjct: 311 VPQDKRQRLLSDFQENKITLLIATDVAARGLHIADVSHVINYDLPQDVEDYVHRIGRTAR 370

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS---VEAIR-ERDAQRILQD 389
            G  G+++  I +        +       +   P       E ++ ER  ++I  +
Sbjct: 371 FGASGVAISFICEEYAYSMPDIEEYIEQKIPVLPITDDLLAEVVKPERRPEKIKTE 426


>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
 gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
          Length = 436

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 195/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     +  A+SE GY   T +Q+  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 1   MTDFQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L AE  +  P     AL +APTREL  Q+ + L      T + V+  +GGVS++ + 
Sbjct: 61  IDRLQAEKKKAVP-KGTRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +  + +++     +VLDEAD+MLDLGF   +  I      
Sbjct: 120 KRLSKGTDILVATPGRLLDLVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVAD 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA++Y ++  RV +A   +    +      +  + + + +V+ 
Sbjct: 180 KRQTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQ 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      ++VFC T+    R  + L+       ++ G  SQ +R  A++ +R+G   V 
Sbjct: 240 LRDKPDGLSLVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + EL    E  +HR GRT RAG +G ++ +          +
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQ 359

Query: 359 LFREANVSVV 368
           + +   + + 
Sbjct: 360 IEKLIGIEIT 369


>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
 gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
          Length = 416

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++    V+ EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R   A     L + PTRELA+QV  + + L   T + +    GGV      
Sbjct: 62  LQYLLDFPRR--KAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  K+   ++     R+   I               ++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWYHRADDMPHKVELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   R+G   +
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRRNNAITRFREGSVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRTGRAG+KG+++ ++  + Q    
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMA 359

Query: 358 RLFREANVSVVW 369
           R+ R     V  
Sbjct: 360 RVERYIKEEVKE 371


>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
 gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
          Length = 488

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P+ +   +  +G+   T++Q       L  +DV+  AQTGSGKT++F L  
Sbjct: 60  VTSFDEVGFPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALPA 119

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+AL +APTRELAVQ+ +E     + + +      GG     + 
Sbjct: 120 MLHINAQ-PLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQI 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  +V+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 179 RDLQRGVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LMFSAT    +  LA ++ KD ++VNI S     + +I     + +  ++ N ++ 
Sbjct: 239 DRQTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIK 298

Query: 238 ILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L    ++NA  ++F  T+      T+ L +  +  +A+ G+  Q+ER   L   + GR+
Sbjct: 299 HLDQISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRS 358

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ- 353
            + IATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAG KG +      +N + 
Sbjct: 359 PILIATDVASRGLDVKDIGYVINYDFPNNCEDYIHRIGRTGRAGAKGTAYTYFTTENAKS 418

Query: 354 -RRAERLFREANVSVVWE 370
            R    +  EA   V  E
Sbjct: 419 ARELVSILTEAKQVVPPE 436


>gi|195119205|ref|XP_002004122.1| GI18279 [Drosophila mojavensis]
 gi|193914697|gb|EDW13564.1| GI18279 [Drosophila mojavensis]
          Length = 459

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH K +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 413 ELGTEI--KPIPKV 424


>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
 gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
          Length = 486

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 194/367 (52%), Gaps = 8/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA     +   T +Q   + P L+ KD++  AQTGSGKT AF + + + L  +
Sbjct: 72  DLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHD 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    
Sbjct: 132 QQPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKP 185

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI++ TPGRL DH+       +  L+ +V+DEAD +LD+ F   ++ IL + P K R   
Sbjct: 186 HIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTTY 245

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L    
Sbjct: 246 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFI 305

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDV
Sbjct: 306 GKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDV 365

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P ++LVI+ ++  + ++ +HR GRT RAGR G SV ++ Q       R+    
Sbjct: 366 AARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEEVL 425

Query: 364 NVSVVWE 370
              +  E
Sbjct: 426 GKKLPKE 432


>gi|254884100|ref|ZP_05256810.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
 gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
          Length = 425

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V +   + ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEI-KLAVSKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KAIENFLGRNIYKIPVPE 374


>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|237723636|ref|ZP_04554117.1| ATP-dependent RNA helicase [Bacteroides sp. D4]
 gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
 gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
 gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
 gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
          Length = 423

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V +   + ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEI-KLAVSKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KAIENFLGRNIYKIPVPE 374


>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
 gi|212664102|gb|EEB24674.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
          Length = 423

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V +   + ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEI-KLAVSKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KAIENFLGRNIYKIPVPE 374


>gi|160420299|ref|NP_666087.3| probable ATP-dependent RNA helicase DDX46 [Mus musculus]
          Length = 1031

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQEGGQSESFKRYEEE 935


>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
          Length = 425

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V +   + ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEI-KLAVSKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQTQF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KAIENFLGRNIYKIPVPE 374


>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71900655|ref|ZP_00682780.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
 gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 446

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 4/376 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +  ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   
Sbjct: 3   FETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+A +     A  P AL + PTRELA QV   L        V  AV  GGV +  +   L
Sbjct: 63  LMAASSNVG-AGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +++  PGRL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R
Sbjct: 122 RRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLHSIKRILGKLPRQNR 181

Query: 182 MLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             + FSAT +  I  LA  +      V +AS N     I +R   V +S +   ++ +L 
Sbjct: 182 QTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLA 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +A
Sbjct: 242 QDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q   +   ++ 
Sbjct: 302 TDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIV 361

Query: 361 REANVSVVWEPAPSVE 376
           R  +  +     P  E
Sbjct: 362 RLLDRDMDIRDVPDFE 377


>gi|255713670|ref|XP_002553117.1| KLTH0D09328p [Lachancea thermotolerans]
 gi|238934497|emb|CAR22679.1| KLTH0D09328p [Lachancea thermotolerans]
          Length = 551

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P+ +   +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 110 ITTFDEAGFPEYVLSEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 169

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+  E       + +      GGV    + 
Sbjct: 170 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGVPRGHQI 228

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L  GA IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 229 RELTRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 288

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++VN+ S     +   + I      +   DR   
Sbjct: 289 DRQTLMWSATWPKEVQQLARDYLHDPIQVNVGSLELAASHNIAQIVEVVSDMEKRDRLLK 348

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+ +    T+ L +  +  +A+ G+ +Q ER   LQ  R G 
Sbjct: 349 HLETASEDKDSKILIFASTKRTCDEITRYLRQDGWPALAIHGDKAQNERDWVLQEFRTGN 408

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  + 
Sbjct: 409 SPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKG 468

Query: 355 R---AERLFREANVSVVWE 370
                  + REAN  +  E
Sbjct: 469 MGAQLISIMREANQQIPPE 487


>gi|168042111|ref|XP_001773533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675235|gb|EDQ61733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 600

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 116/388 (29%), Positives = 191/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 144 VNTFAEIDLGPALNENIRRCKYTKPTPVQKYAIPISLHGRDLMACAQTGSGKTAAFCFPI 203

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++       P       PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  V
Sbjct: 204 IAGIMRNTPPGRPRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIRVVVAYGGAPV 263

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H + R+++ G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I++
Sbjct: 264 HNQLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVE 323

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V   D
Sbjct: 324 QMDMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQDVD 383

Query: 231 RDNAIVNILRYH-------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + +++++               +VF  T+         L    F    + G+ SQQER
Sbjct: 384 KRSMLMDLIHAQSALAPPGQQTLTLVFVETKKGADALEDWLCRLGFPATTIHGDRSQQER 443

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL+  R G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G+
Sbjct: 444 EHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGV 503

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  Q   R    L  E+N  V 
Sbjct: 504 ATAFFNEKDQALARPLTELMTESNQEVP 531


>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
 gi|260622430|gb|EEX45301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
           finegoldii DSM 17565]
          Length = 421

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELQLNANVLEALDAMRFDECTPIQEQAIPIILEGKDLIAVAQTGTGKTAAFLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   N    P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKLSEGNH---PEDAINCIIMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGILFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLTLGADVVIATPGRLIAHLSLGYVDLSKVSYFILDEADRMLDMGFYDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   +   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTVMFSATMPAKIQQLANTILNNPSEI-KLAVSKPAEKIIQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V    K L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFADEVPERVIIFASSKIKVKEVAKALMAMKLNVGEMHSDLEQAQRETVMHEFKAGRVN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINFDVPHDSEDYVHRIGRTARANNDGVALTFVSEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P+
Sbjct: 357 KSIENFLEKDIYKIPIPA 374


>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Pongo
           abelii]
          Length = 455

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|114643639|ref|XP_001154067.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3 [Pan
           troglodytes]
          Length = 455

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|157863878|ref|XP_001687490.1| nucleolar RNA helicase II [Leishmania major strain Friedlin]
 gi|68223701|emb|CAJ01930.1| putative nucleolar RNA helicase II [Leishmania major strain
           Friedlin]
          Length = 674

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 134/435 (30%), Positives = 203/435 (46%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +  ++ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      +    P A+   PTRELA+QV   L       G+VV    GGV+   + R 
Sbjct: 147 RLLKLPSHLTRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLVVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +         +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSVGAERPAHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++    D   +    
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMEQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|39644716|gb|AAH09379.2| DDX47 protein [Homo sapiens]
          Length = 450

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 19  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 78

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 79  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 133 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 192

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 193 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 253 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 313 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 372

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 373 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 429

Query: 415 KIA 417
           + A
Sbjct: 430 EGA 432


>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
 gi|52782792|sp|Q9H0S4|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
 gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
 gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
 gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
 gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
 gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
 gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
          Length = 482

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTLSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|302847755|ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
 gi|300259253|gb|EFJ43482.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis]
          Length = 535

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 190/379 (50%), Gaps = 6/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P+ +   +   G+   T +Q       L  +D++  A+TGSGKT+A+ L  
Sbjct: 112 VTSFEEASFPEYVLAEVIRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPA 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+ +E +   + + +   V  GG     + 
Sbjct: 172 VVHINAQ-PYLQPGDGPIVLVLAPTRELAVQIQQECQRFGSSSRIKNTVVYGGAPKGPQA 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL++G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLRSGVEIVIATPGRLIDMMDSRVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L++SAT    +  +A+++ K+  +V I S   + +    + V +         +  
Sbjct: 291 DRQTLLWSATWPKEVQAIARDFLKNPYQVIIGSPELKANHNIRQIVEMVEGYAKYPRLRK 350

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   +  ++FC T+       + L    +  + L G+ SQQER   LQ  ++G   
Sbjct: 351 LLDTEMDGRRILIFCETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHP 410

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+++V++ ++    E+ +HR GRTGRAG  G +         R A
Sbjct: 411 IMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGAHGTAYSFFTGADARLA 470

Query: 357 ERLFREANVSVVWEPAPSV 375
            ++  E       +P P +
Sbjct: 471 RQVV-EVMQEAGQQPPPEL 488


>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 419

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 194/382 (50%), Gaps = 3/382 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   +   L +  +   T VQ+  +   L  +DVL  AQTG+GKT AFGL +   LL  E
Sbjct: 10  LCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPIIQRLLESE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   ++  LAL + PTRELA QV   +      T + V    GG S++ + R+L  G 
Sbjct: 70  TTRDIQSNDVLALVLVPTRELAQQVFDNITLYAQDTIIKVVTAYGGTSMNVQTRNLDQGC 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K +N++  + +VLDEAD MLD+GF  DI+ IL    ++R+ + F
Sbjct: 130 DILIATPGRLLDHLFCKNINLTKTQYLVLDEADRMLDMGFMPDIKRILKRCNEERQTMFF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I T+A     + V V +   N     +      V    +   +  ++     +
Sbjct: 190 SATFDKRIKTIAYKMLSEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLAYLIGSRNWQ 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L     +  +++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 250 QVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKSGQVRALIATDVAA 309

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++ ++    E+ +HR GRTGRAG++G +V ++ ++ +   E + R  + 
Sbjct: 310 RGLDIQQLEQVVNFDMPYKAEDYVHRIGRTGRAGKEGFAVSLMSRDEEYLLEAIERLLDG 369

Query: 366 SVVWEPAPSVEA--IRERDAQR 385
            +  E     E   I E +  R
Sbjct: 370 KLPQEWLEGFEPSLIEEVETDR 391


>gi|86750102|ref|YP_486598.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
 gi|86573130|gb|ABD07687.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
          Length = 516

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 223/472 (47%), Gaps = 16/472 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   
Sbjct: 62  MLEKGRAR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +++DEAD MLD+GF  DIE +    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERVCKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVN 237
           + L F+AT+ P I  + + +  +  ++ ++        +    V         R+     
Sbjct: 179 QTLFFTATMPPEIRRVTETFLHNPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I      +NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   +
Sbjct: 239 IRAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIA 358

Query: 358 RLFREANVSVVWEPA-PSVEAIRER--DAQRIL-----QDPLFLDSIQGDEKKMVDVLLA 409
            + +     +    A P  EA RE+  D  R               ++G+++   +    
Sbjct: 359 AIEKLIGKEIPRVDAGPVGEADREQAEDTDRPARSSRRSSESRSREVRGEDRPARESRGP 418

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           + +P     G  R  R    A   +            R+   A K     R+
Sbjct: 419 RREPRGEGRGEARPAREPREARAPVEAREAPREVREPREPREARKPRREPRN 470


>gi|85374360|ref|YP_458422.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787443|gb|ABC63625.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 455

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 222/468 (47%), Gaps = 21/468 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     + +++ + GY   T +QE  + P L  KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FADLGLSPELLKSVEKAGYTEPTPIQEQAIPPVLMMKDIIGIAQTGTGKTASFVLPM 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A   R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + 
Sbjct: 60  IDIMAAGRRR---ALMPRSLILEPTRELAAQVAENFEKYGENHDLKMALLIGGVQMGDQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIEFI    P+
Sbjct: 117 KALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+ P I  L+K +  +  R+        + DI    V V    +   +  +
Sbjct: 177 QRQTMLFSATMPPPIEKLSKQFMSNPKRIETTRAATTNKDITAFRVNVGQRQKRETLEWL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF + + +V    K L    F+   + G++ Q +R+  LQ  +DG   + 
Sbjct: 237 LENDHVETAIVFANRKTTVRELNKSLQRRGFKSGEIHGDIDQNQRNAELQRFKDGEINIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+DVAARG+D+  +  V + +   +P++ +HR GRTGRAG KG +   +        + 
Sbjct: 297 VASDVAARGLDIKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFTFVAPEDAEAIDN 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     +        +   + D +  L+DP   D  +   K   +    + D EK A 
Sbjct: 357 VEKLTENKI--------KVFGKDDVRVELKDPSKGD--EQKPKPKRERQSREEDEEKPA- 405

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRF-RDDSRAFKVGGGSRDNFKG 465
              R  R      EE    S      R  RDD+       G +  F G
Sbjct: 406 ---RKPRKRRDESEERPKRSTGRKPPREDRDDAVPAGEWNGPQPGFLG 450


>gi|322712791|gb|EFZ04364.1| eukaryotic initiation factor 4A-12 [Metarhizium anisopliae ARSEF
           23]
          Length = 402

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 29  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 89  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 143 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPAT 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 203 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 263 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 323 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDI 382

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 383 ELYYSTQIDEMPMNVADLI 401


>gi|242241488|ref|ZP_04795933.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242235031|gb|EES37342.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 528

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 226/467 (48%), Gaps = 13/467 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I     + L   G+   T +Q+  +   L   D+L  AQTG+GKT AFG+ L   ++ + 
Sbjct: 28  ISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVVGQQ 87

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     +L +APTRELA+QV  +L        V V    GG+ + R+ + L+ G  
Sbjct: 88  -------GVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQ 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-F 185
           IVVGTPGR+ DH+  + L    +  ++LDEADEM+++GF DD+ FI+D  P ++R  M F
Sbjct: 141 IVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLF 200

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L + + K    +   +       ID    +V   ++ +   N L  H  +
Sbjct: 201 SATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPE 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+  V   T  L    ++   L G+++Q +R   L+  ++ +  + +ATDVAA
Sbjct: 261 LAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++  + E+  HR GRTGRAG++G++V  +         ++    N 
Sbjct: 321 RGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNNR 380

Query: 366 SVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
            +     P  + +   RE D +  +Q+ +  ++ +   +++   LL ++D  ++ A  L+
Sbjct: 381 RMKALRPPHRKEVLKAREDDIKDRVQNWMSREN-EPRLQRISSELLKEYDSTELVASLLQ 439

Query: 423 -IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            +  A      ++T    ++ ++R                 F   + 
Sbjct: 440 ELVEANDEVEVQLTFEKPLARKNRSSKGGFRRSNHKRGNGKFDNKNR 486


>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 115/406 (28%), Positives = 201/406 (49%), Gaps = 9/406 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     + +A     + + + +QE  +   L+ +D++  A+TGSGKT AF + +  
Sbjct: 30  TFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL          +  A  +APTREL VQ+G++ E L A   +  A  +GG+ +  +   
Sbjct: 90  KLLDAAPH---RKSTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMA 146

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V +PGRL DH+      ++  +K +V+DEAD +L + F D +  I+ S P+ 
Sbjct: 147 LSKKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRD 206

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT++  ++ L +      V+  +A +      +    + V    +   +  +L
Sbjct: 207 RQTFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALL 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      ++F  T  +  R    L       V L G+++Q  R  AL   R G   V +
Sbjct: 267 AHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVLV 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P +++VI+ ++  NPE  +HR GRT RAGR G SV ++ Q      +R+
Sbjct: 327 ATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRI 386

Query: 360 FREANVSVVWEPAPSVE---AIRERDAQRILQDPLFLDSIQGDEKK 402
             +    +   P    E   +++E+  + +    L +   + D K+
Sbjct: 387 ENKQGKKMEEFPEVKEENAMSLQEKVLEALRSTQLEMREQEEDIKE 432


>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 431

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 183/373 (49%), Gaps = 8/373 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F+++     +   L++ G+   T++Q   +   L  +DVL  AQTG+GKT AF + +
Sbjct: 6   FTSFDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPM 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       +P   P AL +APTRELA+Q+   ++ L     +     +GG  +  + 
Sbjct: 66  LERL-----SGTPKGQPRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQV 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+    I+V TPGRL DH+    +++  +  +VLDEAD MLD+GF   I  ILD+ P+
Sbjct: 121 RGLRQRPDIIVATPGRLLDHMWNGTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPE 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   +  LA+   KD VRV +         +           ++   +  
Sbjct: 181 ERQTLLFSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDRKNGL-LMS 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L    +   +VF  T+    R   +L     +V  L G  +  +R  AL+  R G  RV 
Sbjct: 240 LLQSESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  VI+ ++ + PE+ +HR GRT R    G +   +    Q +   
Sbjct: 300 VATDIAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRA 359

Query: 359 LFREANVSVVWEP 371
           + R    +V    
Sbjct: 360 IERLLGQAVPRAE 372


>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
          Length = 455

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 217/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +   + + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKESSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|241760372|ref|ZP_04758467.1| dead/deah box helicase [Neisseria flavescens SK114]
 gi|241319250|gb|EER55728.1| dead/deah box helicase [Neisseria flavescens SK114]
          Length = 487

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 142/432 (32%), Positives = 227/432 (52%), Gaps = 19/432 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     +  AL+++GY N T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 25  MNPFSSLGLGSELVSALTDQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 84

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 85  LELLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQAYIKNLPLRHTVLFGGVNMDK 144

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 145 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 204

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT SP I  LA+++      V +A++N  +++++   + V    + + + 
Sbjct: 205 PKQRQTLLFSATFSPPIRKLAQDFMHTPEMVEVAAQNTTNANVEQHIIAVDALKKRSLLE 264

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 265 RLIVDLHMNQVIVFCKTKQSVDQVTRDLVRRNIAAQSIHGDKSQQSRLETLNAFKEGTLR 324

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 325 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 384

Query: 357 ERLFR----EANVSVVWEPAP-----------SVEAIRERDAQRILQDPLFLDSIQGDEK 401
           E +      + NV  +    P             + ++  D++    D    +       
Sbjct: 385 EAIKELTGSDLNVERIEGFEPHWWDNDNQNEAEAQPVQHNDSRSRRDDRNKRNEYANKSD 444

Query: 402 KMVDVLLAKHDP 413
           K       K+DP
Sbjct: 445 KNSKKAEEKNDP 456


>gi|159463584|ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 513

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 8/377 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE  + P+ + E +   G+   T +Q       L  +D++  A+TGSGKT+A+ L  
Sbjct: 108 VKTFEEASFPEYVLEEVLRAGFKEPTPIQCQGWPMALLGRDLIGLAETGSGKTLAYLLPA 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELAVQ+ +E +   A + +   V  GG     + 
Sbjct: 168 VVHINAQ-PYLQSGDGPIVLVLAPTRELAVQIQQECQRFGASSRIKNTVVYGGAPKGPQA 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 227 RDLRGGVEIVIATPGRLIDMLDSRITNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L++SAT    +  +A+++ KD  +V I S + + +    + V +         +  
Sbjct: 287 DRQTLLWSATWPKEVQAIARDFLKDPYQVIIGSPDLKANHNIRQVVEMVEGFAKYPRLRK 346

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   +  ++F  T+       + L    +  + L G+ SQQER   LQ  ++G   
Sbjct: 347 LLDGEMDGRRILIFVETKRGCDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHP 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+++V++ ++    E+ +HR GRTGRAG  G +         R A
Sbjct: 407 IMLATDVAARGLDVKDIKVVVNYDMPKTAEDYVHRIGRTGRAGATGTAYSFFTNGDARLA 466

Query: 357 E---RLFREANVSVVWE 370
                + +EA      E
Sbjct: 467 RQVVDVMQEAGQQPPPE 483


>gi|322496407|emb|CBZ31477.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 678

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +  ++ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL     F+    P A+   PTRELA+QV   L       G+VV    GGV+   + R 
Sbjct: 147 RLLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLVVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +     +   +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++    D        
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|321398908|emb|CAM65330.2| putative nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 678

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +  ++ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL     F+    P A+   PTRELA+QV   L       G+VV    GGV+   + R 
Sbjct: 147 RLLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLVVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +     +   +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++    D        
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
 gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
           JE062]
          Length = 453

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 3/372 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   +    AL  +GY   T +QE  +   L  KD+L  AQTG+GKT AF + L
Sbjct: 1   MTDFDKLGVAKPFQIALKSKGYSEPTPIQENAIPYILDGKDLLGLAQTGTGKTAAFAVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R +P  +  +L + PTRELA Q+ + ++    +T +  +  +GGV    + 
Sbjct: 61  LQRLLESRYRAAP-KSVRSLILTPTRELADQITKNIKAYAGRTKMYTSCVVGGVPFPPQF 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  ++V TPGRL D  R  G++   L+  VLDEAD+MLDLGF  ++E I    PK
Sbjct: 120 HALQRGLDVLVATPGRLLDLHRKNGVSFDELEIFVLDEADQMLDLGFIAELEEIAYLLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I  L++ +  + V V+ A        +  +   +    +   +  +
Sbjct: 180 KRQTLFFSATMPREIRDLSERFLTNPVEVSTAPPATTVETVTQQIAHLEKDAKFPLLKEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A+VF  T+   +R    L        A+ G++SQ ER   L   + G+ +  
Sbjct: 240 LEKDECERALVFTLTKKGSARLAARLNADGVPAEAIHGDMSQAERQKTLDKFKRGKLKTL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++ +  EN +HR GRT RAG+ G ++       +     
Sbjct: 300 VATDVAARGIDVSDISHVINFDMPNATENYVHRIGRTARAGKSGTAITFCLPEDRGMLRA 359

Query: 359 LFREANVSVVWE 370
           + +     +   
Sbjct: 360 IQKLIGKKIAEM 371


>gi|170747431|ref|YP_001753691.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653953|gb|ACB23008.1| DEAD/DEAH box helicase domain protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 527

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 126/366 (34%), Positives = 187/366 (51%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+   GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSEKVLNAVEAAGYTEPTPIQAEAIPHVLARRDVLGIAQTGTGKTAAFTLPMLTLLENGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVVENFDRYGTNHKLNVALIIGGVSFADQDAKLMRGTD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKMVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHG 243
           AT+ P I  LA  +  +  RV +A      + I  R V       + R+     I     
Sbjct: 185 ATMPPEIERLADMFLHNPQRVEVARPASTATTITQRLVATGAEGHAKRERLRGLIRGEED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KN I+FC+ +  V+   K L  H F   AL G++ Q+ R+ AL   R+G   + +A+DV
Sbjct: 245 LKNGIIFCNRKRDVALLQKSLVSHGFDAAALHGDMDQRARTTALDGFRNGETALLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  +PE+ +HR GRTGRAGR G +  ++  +  R    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHPEDYVHRIGRTGRAGRSGTAYTLVAPDDARSLGAIEALI 364

Query: 364 NVSVVW 369
              + W
Sbjct: 365 GQPIPW 370


>gi|154313296|ref|XP_001555974.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160380642|sp|A6RY31|DHH1_BOTFB RecName: Full=ATP-dependent RNA helicase dhh1
 gi|150849414|gb|EDN24607.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 538

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 169/374 (45%), Gaps = 11/374 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+    + +   + E GY   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N +         L + PTRELA+Q  +  + L    G+ V V  GG ++  +   L
Sbjct: 109 INPKNTKV------QCLILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q   HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 QEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIEQLLQFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +   +     D   +N+  E             V   ++ + +  +   
Sbjct: 223 IMLFSATFPMTVKDFSDKNMADPYEINLMDELTLRGI-TQFYAFVEEKEKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +     + R
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNIER 401

Query: 362 EANVSVVWEPAPSV 375
           E    +   P P +
Sbjct: 402 ELGTEIA--PIPQI 413


>gi|146076715|ref|XP_001462984.1| nucleolar RNA helicase II [Leishmania infantum JPCM5]
          Length = 629

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 135/435 (31%), Positives = 204/435 (46%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +  ++ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPIVVKALQSRGIESMFPVQALTFNAIMRNTDVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL     F+    P A+   PTRELA+QV   L       G+VV    GGV+   + R 
Sbjct: 147 RLLKLPSHFTRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLVVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +     +   +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSVGAERPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD-EKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++    D        
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATDLFMDQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|322698074|gb|EFY89847.1| eukaryotic initiation factor 4A-12 [Metarhizium acridum CQMa 102]
          Length = 402

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 29  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 89  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 143 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPAT 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 203 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 263 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 323 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDI 382

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 383 ELYYSTQIDEMPMNVADLI 401


>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 445

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 188/360 (52%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A++++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +  +   AL + PTRELA QV   +E    +  +   V  GGV ++ +   L+ G  
Sbjct: 66  GKPAGPNQARALILTPTRELAAQVSDSVETYGKQLSLKSTVVFGGVKINPQMMRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL + PK R+ L+FS
Sbjct: 126 ILVATPGRLLDLFNQNAIKFDQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V    +   +  +++ +    
Sbjct: 186 ATFSNEIRQLAKGLVNNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   +R TK L     +  A+ G  SQ  R+ AL   +DG  +  +ATD+AAR
Sbjct: 246 VLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLFREA 363
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++  +  +     E L ++ 
Sbjct: 306 GIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAGIENLIQKL 365


>gi|37676599|ref|NP_936995.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201142|dbj|BAC96965.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 445

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 121/422 (28%), Positives = 204/422 (48%), Gaps = 10/422 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     + +AL E GY  LT +Q+  +    R  D+  +AQTG+GKT AF L L   LL 
Sbjct: 24  QGFAPEVVKALEECGYEKLTPIQQKAIPVARRGHDIFATAQTGTGKTAAFSLPLIQQLLE 83

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +A  AL  APTRELA Q+   ++     T + VA   GG  +  + R L+NG
Sbjct: 84  SGKSASRKTA-RALIFAPTRELAEQIADNIKAYTKYTNLSVAAIFGGRKMSSQERMLENG 142

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +HI    +++++++ +V DEAD +LD+GF + +  I+       +++M
Sbjct: 143 VDILVATPGRLEEHIESGNVSVANIEFLVFDEADRILDMGFINAVRKIMLDVETNPQIMM 202

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  L+K+  +   R+ +  EN     + +    V    +   +  ++     
Sbjct: 203 FSATTSSQLNELSKDILRKPKRIAVERENTTAHTVAHVLYPVDQERKTELLSELIGRKNW 262

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     +     G+ +Q  R  AL+  ++G+ RV +ATDVA
Sbjct: 263 QQVLVFVNYKETANDIVKELKLDGIKANVCHGDKAQSARRRALEEFKEGKVRVMVATDVA 322

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 323 ARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNREEELTVVQVENLIQ 382

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
             +        E   RE    ++   P F        K         ++P   AA   R+
Sbjct: 383 QRIRRIELAGYEPKSREAYIDKLNSKPSF--------KNRQGRRNNANEPTDQAAAERRL 434

Query: 424 HR 425
             
Sbjct: 435 AM 436


>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 540

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 192/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STL-LAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L   + ++            AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAVQPNKVQTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++  +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVSDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALSEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 361 LLRDIERLIKRELPRTVLAGFEPDPTI 387


>gi|324506599|gb|ADY42814.1| Eukaryotic initiation factor 4A [Ascaris suum]
 gi|324507947|gb|ADY43360.1| Eukaryotic initiation factor 4A [Ascaris suum]
          Length = 415

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/368 (30%), Positives = 192/368 (52%), Gaps = 7/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P   ++DV+  AQ+G+GKT  F +++   +   
Sbjct: 48  NLKEDLLRGVYAFGFEKPSAIQQRAIVPCCMKRDVIAQAQSGTGKTATFSVSVLQNIDES 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    GV    CIGG +V  ++R L++G 
Sbjct: 108 IPEV------QALVMAPTRELAQQIQKVMVSLGEYMGVKCHACIGGTNVRDDQRKLESGV 161

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I+ + L  S +K  VLDEADEML  GF+D I  +    P   ++++ 
Sbjct: 162 HIVVGTPGRVNDMIQRQSLQTSAIKMFVLDEADEMLSRGFKDQIYEVFKCMPNDVQVVLL 221

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+   +  +   +  D VR+ +  E      I      +     +   + ++ +    
Sbjct: 222 SATMPAEVLEVTNRFMNDPVRILVKKEELTLEGIRQFYIDVEKEEWKFETLCDLYQTVNV 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V      + +  + V  + G++ Q ER   ++  R G +RV I TD+ 
Sbjct: 282 TQAVIFCNTRRKVDYLANQMTKEKYTVSCMHGDMEQSERDLIMREFRSGSSRVLITTDLL 341

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + +   R+ + +    N
Sbjct: 342 ARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEQDTRQLKDIESFYN 401

Query: 365 VSVVWEPA 372
             +   P 
Sbjct: 402 TQIEEMPM 409


>gi|302696869|ref|XP_003038113.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
 gi|300111810|gb|EFJ03211.1| hypothetical protein SCHCODRAFT_63532 [Schizophyllum commune H4-8]
          Length = 396

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 199/381 (52%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  N+ + +   +    +   +++Q+  + P  + +DV+  AQ+G+GKT  F +++
Sbjct: 22  VSTFDDLNLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATFSISI 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++              AL ++PTRELA Q+   +  L     V    CIGG SV  + 
Sbjct: 82  LQSIDVT------VRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSVGEDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GF+D I  +    P 
Sbjct: 136 RKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  + + +  D +R+ +  +      I    V +     + + + +
Sbjct: 196 ATQVVLLSATLPYDVLEMTQKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T+ + +  F V ++ GE+ Q+ER   +   R G +RV
Sbjct: 256 LYDTLTITQAVIFCNTRRKVDWLTEKMRQSNFTVSSMHGEMVQKERDAIMAEFRAGTSRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R   
Sbjct: 316 LITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILR 375

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P  + E I
Sbjct: 376 DIEQFYSTQIDEMPVNAAELI 396


>gi|259416782|ref|ZP_05740702.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
 gi|259348221|gb|EEW59998.1| ATP-dependent RNA helicase RhlE [Silicibacter sp. TrichCH4B]
          Length = 490

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 125/458 (27%), Positives = 210/458 (45%), Gaps = 18/458 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R     +   L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITRLARGRARARMPRS---LVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AAIDRGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     RV IA +      I+   V+   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSGPERVEIARQATTSETIEQAVVMFKASRKDREGSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +        KNAI+FC+ +  V    K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RRVLRELINQEGEAVKNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  ++ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRDGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRNGKAITLCS 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
              ++  + +       +     P    ++    +   ++    D  +   +       A
Sbjct: 358 PRDEKALDAVEGLVQKEITRLENP----VKPTPRKTATKEDATSDKPKPARRSRSKTTAA 413

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           K +   + A      +    A ++    +     D  +
Sbjct: 414 KSEEPPVEAAAQTTEQQPQQAQDKPQRQAEKPADDTNK 451


>gi|225719408|gb|ACO15550.1| Eukaryotic initiation factor 4A-III [Caligus clemensi]
          Length = 403

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRSIKPILKGRDVIAQAQSGTGKTATFSISILQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++       +       L ++PTRELAVQ+ + L  L     V    CIGG ++  + R 
Sbjct: 91  SID------TSLRETQCLVLSPTRELAVQIQKVLLALGDYMNVQCHACIGGTNLGEDIRK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 145 LDYGQHVVSGTPGRVYDMIRRRTLRTRGIKMLVLDEADEMLNKGFKEQIYDVYRYLPPFT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 205 QICLISATLPHEILEMTSKFMADPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G++RV I
Sbjct: 265 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDVPQKERDDIMKEFRSGQSRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 325 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 384

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 385 EQYYSTQIDEMPMNVADLI 403


>gi|220923247|ref|YP_002498549.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           nodulans ORS 2060]
 gi|219947854|gb|ACL58246.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
           ORS 2060]
          Length = 465

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 191/368 (51%), Gaps = 6/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   +  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEENFERYGTNHKLNVALLIGGVSFADQDAKITRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHG 243
           AT+ P I  LA ++  + VR+ +A      S I+ R V         R      I     
Sbjct: 185 ATMPPEIQRLADDFLHNPVRIEVARPASTASTIEQRLVATGGEGHQKRKTLRRLIRGAEE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KN I+FC+ +  V++  K LA H F V AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LKNGIIFCNRKRDVAQLQKSLANHGFTVAALHGDMDQRARMAALDAFRSGEIPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++ +  ++    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRNGSAFTLVARGDEKALAAIESLI 364

Query: 364 NVSVVWEP 371
              + W  
Sbjct: 365 GQPIPWAE 372


>gi|91224087|ref|ZP_01259350.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
 gi|91190998|gb|EAS77264.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 12G01]
          Length = 517

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL +E
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQE 364


>gi|15828540|ref|NP_325900.1| ATP-dependent RNA helicase [Mycoplasma pulmonis UAB CTIP]
 gi|14089482|emb|CAC13242.1| ATP-DEPENDENT RNA HELICASE [Mycoplasma pulmonis]
          Length = 480

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 230/475 (48%), Gaps = 22/475 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I ++L E G+   T +QEA+L      KD++  AQTG+GKT AF + + S L   
Sbjct: 7   NIKSEILKSLDEIGFEKPTKIQEAVLPFAFEGKDIIGQAQTGTGKTAAFAIPILSNLDCS 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R         L IAPTRELA Q+  +L  L   T   +A+ +GGVS  +++  L +G 
Sbjct: 67  INRI------QHLVIAPTRELANQIYDQLNILGKYTCSKIALILGGVSYEKQKAALNSGV 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +IVV TPGRL D +    +++SH+K   LDEADE+L +GF ++I  I++  PKKR+   F
Sbjct: 121 NIVVATPGRLEDLLAQNKIDLSHIKTFTLDEADELLKIGFYNEIIKIMNKLPKKRQNFFF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT       L++    +A  ++++S       ID   V+V+  ++   +V  L +    
Sbjct: 181 TATFDEKTKKLSQEITNEAKMISMSSGLETTEKIDQNFVVVSEEEKLITLVKFLDFKKPT 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F  T+  V      L E  F  V + G++ Q++R++ L   +D +  + +ATDV A
Sbjct: 241 ASVIFGRTKRRVDELASALQELGFSAVGIQGDMVQKDRTSVLNRFKDQKVNIIVATDVMA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  ++LV + +L    E   HR GRTGR  R G ++  + +       ++  E   
Sbjct: 301 RGIDVSHVDLVFNFDLPEEIEYYTHRIGRTGRGTRIGQAISFVKKPEVGYIYKIMTETKS 360

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLF--LDSIQGD-------EKKMVDVLLAKHDPEKI 416
            +     PS E       Q + +D L   L SI  D       E  +   +L ++ P ++
Sbjct: 361 IIKEISIPSKE-----HLQTVWEDHLINKLSSILEDAQNKHWREDVVQKDILERYSPREL 415

Query: 417 AAGFLR--IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +       I   GL    ++TP   V  +     +   F+    S    +    F
Sbjct: 416 SILLWSYIIQEKGLRKNLKLTPEPPVRYKKNNDSNKGRFQSRTSSHLEKRNRRNF 470


>gi|28900245|ref|NP_799900.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837460|ref|ZP_01990127.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260361632|ref|ZP_05774659.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880805|ref|ZP_05893160.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260896485|ref|ZP_05904981.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260899501|ref|ZP_05907896.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808556|dbj|BAC61733.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149749260|gb|EDM60045.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308089237|gb|EFO38932.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092075|gb|EFO41770.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109261|gb|EFO46801.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308112745|gb|EFO50285.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 522

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL +E
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQE 364


>gi|207367146|dbj|BAG72093.1| vasa [Trachurus japonicus]
          Length = 657

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 189/380 (49%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 220 TFEEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 279

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     +FS    P A+ +APTREL  Q+  E       T V   V  GGV+   +
Sbjct: 280 KLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVASGHQ 339

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            RD+  G +I+ GTPGRL D I    + +  L+ +VLDEAD MLD+GF  D+        
Sbjct: 340 IRDICRGCNILCGTPGRLLDVIGRGKVGLEKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 399

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + +   +  ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 400 MPTKENRNTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIEVTKFSKR 459

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V++L+  G++  +VF  T+         L++      ++ G+  Q+ER  AL   R 
Sbjct: 460 EQLVDLLKATGSERTMVFVETKRQADFIATFLSQTKIPTTSIHGDREQREREQALADFRS 519

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V    Q+ 
Sbjct: 520 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDQDA 579

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A  +V 
Sbjct: 580 DGQLARALVTILSKAQQTVP 599


>gi|302891875|ref|XP_003044819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256725744|gb|EEU39106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 551

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 135 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPS 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E++     + +      GGV    + 
Sbjct: 195 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIKQEIDKFGRSSRIRNTCVYGGVPKGPQI 253

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 254 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 313

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA ++ +D ++VNI S     N + + I      +   DR   
Sbjct: 314 DRQTLMWSATWPKEVRALATDFLQDFIQVNIGSMDLAANHRITQIVEVVTDMEKRDRMIK 373

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   +  +
Sbjct: 374 HLEKVMENKENKILIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKSAK 433

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG KG ++     + Q+
Sbjct: 434 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDNQK 493

Query: 355 RAERL---FREANVSV 367
           +A  L    +EA   +
Sbjct: 494 QARDLVNVLQEAKQQI 509


>gi|119895518|ref|XP_586902.3| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|297477226|ref|XP_002689237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
 gi|296485325|gb|DAA27440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Bos taurus]
          Length = 1031

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|74149390|dbj|BAE22450.1| unnamed protein product [Mus musculus]
          Length = 615

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDE D MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEGDRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +   SVE 
Sbjct: 459 VLREANQAINPKLLQSVED 477


>gi|46122961|ref|XP_386034.1| hypothetical protein FG05858.1 [Gibberella zeae PH-1]
 gi|91206664|sp|Q4IAA0|FAL1_GIBZE RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 401

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 88  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 142 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPAT 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 262 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 322 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRDI 381

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 382 ELYYSTQIDEMPMNVADLI 400


>gi|310800687|gb|EFQ35580.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 401

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 88  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 142 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 262 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 322 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 381

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 382 ELYYSTQIDEMPMNVADLI 400


>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
 gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
           CFBP2957]
          Length = 547

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STLLAEND-----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L A                 AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPVRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 361 LLRDIERLIKRELPRTVLEGFEPDPTI 387


>gi|2137271|pir||I49638 probable RNA helicase protein - mouse (fragment)
 gi|286075|dbj|BAA03584.1| Drosophila vasa homologue [Mus musculus]
          Length = 637

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 166/364 (45%), Gaps = 10/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   + + GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 203 TFEEANLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPILA 262

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V+  V  GG      
Sbjct: 263 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIYGGTQFGHS 322

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +I+ ++    
Sbjct: 323 VRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLDMGFAPEIKKLISCPG 382

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                   + + + V +        D+    + V    ++
Sbjct: 383 MPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQYQKE 442

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +++      G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 443 KSLLRFYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGDFRC 502

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     + 
Sbjct: 503 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 562

Query: 353 QRRA 356
               
Sbjct: 563 DNHL 566


>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 422

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 187/365 (51%), Gaps = 1/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + E LS  G    T +Q   +   L  KDVL  AQTG+GKT AFGL L    +   
Sbjct: 13  IAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHP 72

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  P S    AL + PTRELA QV   L+     + + +    GG S++ ++++L+ GA
Sbjct: 73  LQREPNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH   K L + + +A+VLDEAD MLD+GF  DI+ +L     +R+ L F
Sbjct: 133 DILIATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   A    ++ V V +A  N     ++     V    +   +  ++     +
Sbjct: 193 SATFDSKIKAFAHRMMQNPVEVQVAPSNSTADTVEQMVYPVDKKRKRELLAYLIGSRNWQ 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + L     +  +++G+ SQ  R  AL   + G+ R  IATDVAA
Sbjct: 253 QVLVFTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  LE V++ ++    E+ +HR GRTGRAG+ G +V ++  + Q   E + R  + 
Sbjct: 313 RGIDIAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDK 372

Query: 366 SVVWE 370
            +  E
Sbjct: 373 RLPQE 377


>gi|154248677|ref|YP_001419635.1| DEAD/DEAH box helicase domain-containing protein [Xanthobacter
           autotrophicus Py2]
 gi|154162762|gb|ABS69978.1| DEAD/DEAH box helicase domain protein [Xanthobacter autotrophicus
           Py2]
          Length = 537

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 194/381 (50%), Gaps = 7/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + +  A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L + 
Sbjct: 1   MSFSELGLSEKVLAAVADTGYTQPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   +  
Sbjct: 61  TLLEHGRAR---ARMPRTLILEPTRELAAQVEENFTRYGKNHKLNVALLIGGVSFGDQDS 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRL DH+    L +S ++ +V+DEAD MLD+GF  DIE +    P  
Sbjct: 118 KLLRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERVCKLVPFT 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIV 236
           R+ L FSAT+ P I  L   +  + VRV ++      + + +  V         R+    
Sbjct: 178 RQTLFFSATMPPEIQRLVSQFLSNPVRVEVSKPASTAATVTHMLVASGREDYDKREVLRE 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I    G +N I+FC+ +  V+   + L +H F  VAL G++ Q  R  AL   R G A 
Sbjct: 238 LIRNCDGLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDQFRSGEAT 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++     +  
Sbjct: 298 LLVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRVGRTGRAGRAGTAYTLVTHTDAKSV 357

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             + +    +V W  AP  +A
Sbjct: 358 TAIEKLIGNAVPWHGAPLGDA 378


>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
 gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
          Length = 499

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 65  MKFSELKLNDNVLEALDAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPIL 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  +   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 125 NKL---SEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 181

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 182 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYL 241

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA++   D   V   + ++    I   A +   + +   I 
Sbjct: 242 PKERQTIMFSATMPAKIQQLAQSILNDPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIR 300

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 301 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRVN 360

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 361 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 420

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 421 KGIENFLEKEIYKIPVPE 438


>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
 gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
           29413]
          Length = 426

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 199/389 (51%), Gaps = 14/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L   L  ++
Sbjct: 8   LSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLHLLSQDS 67

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            + + + +    AL + PTRELA QV   +        +   V  GGVS++ +++ L+  
Sbjct: 68  LKSASSPSSPIRALILTPTRELAAQVESSVRDYGKYLNLNSMVMFGGVSINPQKQRLKGR 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+
Sbjct: 128 VDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           F AT S  I  LA         + +A  N     +  +   +    + + + +++R    
Sbjct: 188 FFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+A
Sbjct: 248 YQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++  +       + +   
Sbjct: 308 ARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADIEKLIE 367

Query: 365 VSVVWE------------PAPSVEAIRER 381
             + +E            P PS +  +++
Sbjct: 368 KRLPFELVAGIGANSQTKPEPSQDERKQK 396


>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 526

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 186/360 (51%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                ++   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQQL 365


>gi|153832249|ref|ZP_01984916.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
 gi|148871560|gb|EDL70415.1| putative ATP-dependent RNA helicase RhlE [Vibrio harveyi HY01]
          Length = 499

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 186/360 (51%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                ++   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRSNQVRALVLTPTRELAAQVQENVFMYSRHLPLTSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQCIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIDQKITAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIERLIQQL 365


>gi|282855404|ref|ZP_06264727.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
 gi|282586784|gb|EFB92029.1| cold-shock deAd box protein a [Pyramidobacter piscolens W5455]
          Length = 467

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 153/420 (36%), Positives = 241/420 (57%), Gaps = 8/420 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+    AL +RG+   T VQ  +L+    + D++V A+TGSGKT+AF L L S L   
Sbjct: 22  NLPESFLAALDQRGFTTPTPVQAQVLSQPNLDTDMVVQARTGSGKTLAFLLPLLSELEGG 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +      P  L ++PTRELA+Q   E E+L    GV  A  +GG+S+  +   L++GA
Sbjct: 82  SKK------PRLLVLSPTRELAMQNASESEFLGRIRGVGTASIVGGMSMEHQIFQLRHGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGR+ DHIR   L++S ++ +VLDE D MLD+GFRD++E IL+++  +++  +F
Sbjct: 136 SVVVGTPGRVLDHIRRGTLDLSEIETLVLDEGDNMLDMGFRDELEAILEAAVNRKKTWLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  ++ +L + Y K+ +R+ +  E  QH DI +RA LV    R  A+VNIL +    
Sbjct: 196 SATMPDSVFSLCRRYLKEPMRLELNHEEEQHEDIVHRAYLVPSRQRMEALVNILLWEKPA 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+         L E     +AL+G+++Q+ERSNAL+  R GR  + +AT+VAA
Sbjct: 256 LCLIFCHTKTDTGEVAGRLQEEGLMALALNGDMTQRERSNALESFRTGRIPILVATNVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  VI   L  N E  +HRSGRTGRAG +G ++ ++      R + + R + +
Sbjct: 316 RGLDVQGVSHVIQLGLPDNMETFVHRSGRTGRAGHEGSNLLLLTPQESGRFKFMLRSSEM 375

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-DPEKIAAGFLRIH 424
            V W   P ++ I     +R  ++ L       + +   + LL +  D   +AA  L   
Sbjct: 376 KVEWLKVPDIQEISVIQRER-REESLLEIVPAPEVRAWAESLLERSDDAADLAAKLLSAA 434


>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 10/385 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+++ GY   T +Q+  +   +   D+L +AQTG+GKT  F L L  
Sbjct: 2   SFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLE 61

Query: 61  TLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L   +   +P       AL + PTRELA QV   +        +  AV  GGVS++ + 
Sbjct: 62  KLSQRDPGKTPQGRRPVRALILTPTRELAAQVHDSVRTYGKYLRLRSAVVFGGVSINPQM 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ +L   PK
Sbjct: 122 MTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRMLDMGFIHDIKKVLALLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT S  I  LA         + +A  N     +  R + V    +   + ++
Sbjct: 182 QRQNLLFSATFSDDIKALADKLLNQPTLIEVARRNTASERVSQRVLPVDRHRKRELLSHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  +VF  T+   ++ T+ L +      A+ G  SQ  R+ AL+  + GR R  
Sbjct: 242 ISGGNWQQVLVFTRTKHGANKLTEQLQDDGISAAAIHGNKSQGARTKALEDFKTGRIRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+  L  V++ EL + PE+ +HR GRTGRA  +G +V ++  +       
Sbjct: 302 IATDIAARGIDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQAEGEAVSLVCVDEHSFLRD 361

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +     +       +EP PS++A
Sbjct: 362 IEKLIKREIPREMISGFEPDPSIKA 386


>gi|327279490|ref|XP_003224489.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Anolis
           carolinensis]
          Length = 600

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/384 (29%), Positives = 190/384 (49%), Gaps = 9/384 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  +E N P  + E +  + + + T++Q       L   D++  AQTGSGKT+++ L   
Sbjct: 90  MNFYEANFPANVMEVIQRQNFTDPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 149

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +          +      GG     + R
Sbjct: 150 VHINHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYGRACRLKSTCIYGGAPKGPQIR 208

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 209 DLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 268

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ LM+SAT    +  LA+++ K+ V +NI +     + +I     +    ++D+ ++ +
Sbjct: 269 RQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRL 328

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    ++     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 329 MEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 388

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 389 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 448

Query: 356 AERL---FREANVSVVWEPAPSVE 376
              L    REAN ++  +    VE
Sbjct: 449 VSDLISVLREANQAINPKLLQLVE 472


>gi|260365571|ref|ZP_05778108.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877635|ref|ZP_05889990.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895944|ref|ZP_05904440.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308085216|gb|EFO34911.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090909|gb|EFO40604.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308114339|gb|EFO51879.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 417

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/412 (31%), Positives = 205/412 (49%), Gaps = 11/412 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   
Sbjct: 5   FADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQA 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L      T + +    GG S+  ++  L
Sbjct: 65  VQQKKRNGT----PHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  ++
Sbjct: 121 EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    I T+A       V V ++  N     +      V    +   +  ++  
Sbjct: 181 IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 241 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +     +  
Sbjct: 301 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAIET 360

Query: 362 EANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             +  +  E     E   I E + +R   D       +  EK+ +   LA H
Sbjct: 361 LLDQRLPQEWLEGFEPSLIEEVEPER---DGGGRRKSRSSEKRKLKAKLAIH 409


>gi|171463886|ref|YP_001797999.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193424|gb|ACB44385.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 479

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/387 (34%), Positives = 215/387 (55%), Gaps = 8/387 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   I +A++E+GY   T +Q   +   L   D++ +AQTG+GKT AF L +  
Sbjct: 32  TFADFGLDPQIQKAVAEQGYNTPTPIQAQSIPHVLAGNDLMGAAQTGTGKTAAFVLPIIQ 91

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +L   ++  SPA  P+ AL + PTRELAVQV          T +  AV  GGV +  + 
Sbjct: 92  KILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQV 151

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  I++ T GRL DHI  K  N+S ++ +VLDEAD MLD+GF  D++ I+   P 
Sbjct: 152 AILRNGVEILIATLGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIISLIPA 211

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN- 237
           +R+ L+FSAT SP I  LA++Y +  V V +A +N     +     +V+ +D+  AIV  
Sbjct: 212 QRQTLLFSATFSPEIKKLAQSYLRSPVTVEVARQNAAADTVKQVVHMVSSADKQRAIVKV 271

Query: 238 ---ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                R   ++  I+F ++R   ++ ++ L     +  A+ G+  Q ER+  L   + G 
Sbjct: 272 LEARARAGLSRQCIIFTNSRLGCAKLSRTLERDGIKAGAIHGDKGQGERTLTLDAFKSGA 331

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATDVAARG+D+PD+  VI+ EL  N E+ +HR GRTGRAG KG ++ ++  + +R
Sbjct: 332 IEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDLSEKR 391

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
             + + +     +  +P P   +++ R
Sbjct: 392 LLDDIEKLMKRKLDVKPLPEGASLQSR 418


>gi|28900700|ref|NP_800355.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809080|dbj|BAC62188.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
          Length = 421

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/412 (31%), Positives = 205/412 (49%), Gaps = 11/412 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E L+    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +   
Sbjct: 9   FADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQA 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L      T + +    GG S+  ++  L
Sbjct: 69  VQQKKRNGT----PHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P  ++
Sbjct: 125 EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    I T+A       V V ++  N     +      V    +   +  ++  
Sbjct: 185 IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 245 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +     +  
Sbjct: 305 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAIET 364

Query: 362 EANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             +  +  E     E   I E + +R   D       +  EK+ +   LA H
Sbjct: 365 LLDQRLPQEWLEGFEPSLIEEVEPER---DGGGRRKSRSSEKRKLKAKLAIH 413


>gi|269963221|ref|ZP_06177555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
 gi|269832026|gb|EEZ86151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio harveyi
           1DA3]
          Length = 421

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 201/386 (52%), Gaps = 8/386 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + + LS    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +  T
Sbjct: 9   FADLGIEQQLVDTLSGMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLPIIQT 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L    A T + +    GG S+  ++R L
Sbjct: 69  VQQKKRNGT----PQALILVPTRELAQQVMDNLTQYSANTDLKIVCVYGGTSIGVQKRKL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ IL   P+ ++
Sbjct: 125 EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPQDKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    I T+A       V V ++  N     +      V    +   +  ++  
Sbjct: 185 IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  IAT
Sbjct: 245 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKEGKVRALIAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +     +  
Sbjct: 305 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIEN 364

Query: 362 EANVSVVWEPAPSVEA--IRERDAQR 385
             +  +  E     E   I E + +R
Sbjct: 365 LLDQRLPQEWLEGFEPSLIEEVEPER 390


>gi|73997167|ref|XP_534885.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 isoform 1 [Canis familiaris]
          Length = 456

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLTERVTEAQRFARMELREH---GEKKKRTREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|332025289|gb|EGI65460.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 706

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 193/390 (49%), Gaps = 10/390 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 106 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPA 165

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R S    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 166 TVHINHQ-PRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQA 224

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 225 RDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R++LM+SAT    +  LA+++  D +++NI S     N     I           + + 
Sbjct: 285 DRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIVEICQEHEKEMKLSQ 344

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+
Sbjct: 345 LLREIGTERGSKMIIFVETKKKVDDITKTIKREGWSAISIHGDKSQPERDYVLSEFRNGK 404

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 405 TMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 464

Query: 355 RAERL---FREANVSVVWEPAPSVEAIRER 381
           +A+ L     EA  ++  + A    ++R +
Sbjct: 465 QAKELIAVLEEAGQAINPQLADMANSVRNQ 494


>gi|260428461|ref|ZP_05782440.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
 gi|260422953|gb|EEX16204.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
          Length = 430

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 190/371 (51%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   +   L   DVL  AQTG+GKT+AFGL L   LLA+ 
Sbjct: 9   LAPTLSDALKRNGFSEPTPIQNQAIPLALEGHDVLGLAQTGTGKTLAFGLPLIDALLAQP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P +   AL +APTREL  Q+   L  L   T + V   +GG S++R+   L  G  
Sbjct: 69  GKPLPKT-VKALVLAPTRELVNQIAESLRQLTEGTKLRVGTVVGGQSINRQINFLSRGTD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +++S  + +VLDEAD+MLDLGF   +  I       R+ ++FS
Sbjct: 128 ILVATPGRLIDLMDRKSVDLSQTRQLVLDEADQMLDLGFIHALRKIAPKLGTPRQTMLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L+  Y  +  RV ++   +    I      +   D+   +  +LR      
Sbjct: 188 ATMPKQMEELSAAYLTNPRRVQVSPPGKAADKITQSVHFLGKDDKPRKLREVLRQDLDAL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  K L    F   ++ G  SQ +R  A++  RDG   V +ATDVAAR
Sbjct: 248 TLVFSRTKHGAERLMKGLVADGFNAASIHGNKSQGQRDRAIKAFRDGDINVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V++ +L   P+N +HR GRT RAGR+G ++     +      ++ R   + 
Sbjct: 308 GIDIPGVAYVVNYDLPEVPDNYVHRIGRTARAGREGEAIAFCAPDEADLLRQIQRLMKIE 367

Query: 367 VVWEPAPSVEA 377
           +   P  S EA
Sbjct: 368 I---PVASGEA 375


>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
 gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
          Length = 432

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     + +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + + +   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y      V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEEDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|68474769|ref|XP_718592.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
 gi|68474936|ref|XP_718509.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|74627388|sp|Q5A9Z6|FAL1_CANAL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|46440277|gb|EAK99585.1| hypothetical protein CaO19.2488 [Candida albicans SC5314]
 gi|46440366|gb|EAK99673.1| hypothetical protein CaO19.10024 [Candida albicans SC5314]
          Length = 399

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA+Q+   ++ L     +    CIGG +V  + + 
Sbjct: 87  VID------TKSKECQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+   +  +   +  D V++ +  +    S I    V       + + + ++ 
Sbjct: 201 QVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+     + +  F VVA+ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG ++ +I ++     +  
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEF 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EKYYSTKIKEMPM 393


>gi|146419877|ref|XP_001485898.1| hypothetical protein PGUG_01569 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 397

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 197/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +R +D +  AQ+G+GKT  F + + S
Sbjct: 25  TFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILS 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA Q+   +E L     V    CIGG  V  + + 
Sbjct: 85  LID------TKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G HI+ GTPGR+ D I+ + +   H+K +VLDEADE+L  GF++ I  I  + P   
Sbjct: 139 LQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQIYEIYKTLPAGA 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT++P +  +   +  D V++ +  ++     I    +       + + + ++ 
Sbjct: 199 QVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+A V+     + +  F V A+ G++ Q++R + ++  R G  RV I
Sbjct: 259 DNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG ++ ++    +   + L
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKLL 378

Query: 360 FREANVSVVWEPA 372
               +  +   PA
Sbjct: 379 QHYYSTKIREVPA 391


>gi|59800607|ref|YP_207319.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|194097783|ref|YP_002000826.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998282|ref|ZP_04718206.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240013464|ref|ZP_04720377.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240015903|ref|ZP_04722443.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240080042|ref|ZP_04724585.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA19]
 gi|240112252|ref|ZP_04726742.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|240114997|ref|ZP_04729059.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|240117282|ref|ZP_04731344.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|240120536|ref|ZP_04733498.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID24-1]
 gi|240122833|ref|ZP_04735789.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|240125029|ref|ZP_04737915.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127543|ref|ZP_04740204.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493059|ref|ZP_05106230.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|260441187|ref|ZP_05795003.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae DGI2]
 gi|268594137|ref|ZP_06128304.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596188|ref|ZP_06130355.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598313|ref|ZP_06132480.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268600665|ref|ZP_06134832.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268602977|ref|ZP_06137144.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268681449|ref|ZP_06148311.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268683617|ref|ZP_06150479.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268685920|ref|ZP_06152782.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044521|ref|ZP_06570230.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293397657|ref|ZP_06641863.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|59717502|gb|AAW88907.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|193933073|gb|ACF28897.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512099|gb|EEH61444.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae 1291]
 gi|268547526|gb|EEZ42944.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549976|gb|EEZ44995.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582444|gb|EEZ47120.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae MS11]
 gi|268584796|gb|EEZ49472.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID18]
 gi|268587108|gb|EEZ51784.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID1]
 gi|268621733|gb|EEZ54133.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae PID332]
 gi|268623901|gb|EEZ56301.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626204|gb|EEZ58604.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011415|gb|EFE03411.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291611603|gb|EFF40672.1| ATP-dependent RNA helicase [Neisseria gonorrhoeae F62]
 gi|317163562|gb|ADV07103.1| putative ATP-dependent RNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 457

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/406 (33%), Positives = 221/406 (54%), Gaps = 5/406 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AENDR 68
            +  AL+ +GY N T +Q A +   L   D+L +AQTG+GKT AF L     L       
Sbjct: 13  ELVSALTAQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPSLERLKRYATAS 72

Query: 69  FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
            SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ ++  DL+ G  I
Sbjct: 73  TSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDKQTADLRAGCEI 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VV T GRL DH++ K ++++  + VVLDEAD MLD+GF DDI  I+   P++R+ L+FSA
Sbjct: 133 VVATVGRLLDHVKQKNISLNKAEIVVLDEADRMLDMGFIDDIRKIMQMLPRQRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T S  I  LA+++      V +A++N  +++++   + V    + N +  ++        
Sbjct: 193 TFSAPIRKLAQDFMNAPETVEVAAQNTTNANVEQHIIAVDTFQKRNLLERLIVDLHMNQV 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVFC T+ SV R T+ L        A+ G+ SQQ R   L   +DG  RV +ATD+AARG
Sbjct: 253 IVFCKTKQSVDRVTRELVRRNLSAQAIHGDRSQQSRLETLNAFKDGSLRVLVATDIAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L  VI+ E+ + PE+ +HR GRTGRAG  G+++ ++ ++ Q+  E +       +
Sbjct: 313 LDIAELPFVINYEMPAQPEDYIHRIGRTGRAGADGVAISLMDESEQKMFEAIKELTGNKL 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           + E    +E    R  ++    P   ++ +  ++   +   A+ + 
Sbjct: 373 LIE---RIEGFEPRWWEQEGSKPEKTETSEPRQRNRYESARAQREK 415


>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase domain-containing protein [Xylella
           fastidiosa M23]
 gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
 gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 446

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 4/376 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +  ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   
Sbjct: 3   FETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+A +     A  P AL + PTRELA QV   L        V  AV  GGV +  +   L
Sbjct: 63  LMAASSNVG-AGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +++  PGRL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R
Sbjct: 122 RRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR 181

Query: 182 MLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             + FSAT +  I  LA  +      V +AS N     I +R   V +S +   ++ +L 
Sbjct: 182 QTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLA 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +A
Sbjct: 242 QDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q   +   ++ 
Sbjct: 302 TDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIV 361

Query: 361 REANVSVVWEPAPSVE 376
           R  +  +     P  E
Sbjct: 362 RLLDRDMDIRDVPDFE 377


>gi|52545677|emb|CAH10627.2| hypothetical protein [Homo sapiens]
          Length = 652

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 189/374 (50%), Gaps = 10/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ + E   + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+R  G+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L
Sbjct: 397 DVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 456

Query: 360 FR---EANVSVVWE 370
            +   EAN ++  +
Sbjct: 457 IKVLEEANQAINPK 470


>gi|71898621|ref|ZP_00680791.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 446

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 4/376 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +  ALSE+GY   T +Q+  +   L   D+L +AQTG+GKT AFGL +   
Sbjct: 3   FETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+A +     A  P AL + PTRELA QV   L        V  AV  GGV +  +   L
Sbjct: 63  LMAASSNVG-AGKPRALVLTPTRELATQVHDSLRGYAKYQRVSSAVIYGGVGMGNQLDVL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +++  PGRL DHI  + +++S +  +VLDEAD MLD+GF   I+ IL   P++ R
Sbjct: 122 RRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRMLDMGFLPSIKRILGKLPRQNR 181

Query: 182 MLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             + FSAT +  I  LA  +      V +AS N     I +R   V +S +   ++ +L 
Sbjct: 182 QTLLFSATFAEPIKQLALEFMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLA 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+    +    L ++  +  A+ G  +Q +R  AL   + GR  V +A
Sbjct: 242 QDSREQTLVFVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L    E+ +HR GRTGR G +G ++ ++ Q   +   ++ 
Sbjct: 302 TDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVTQEDAKLLRQIV 361

Query: 361 REANVSVVWEPAPSVE 376
           R  +  +     P  E
Sbjct: 362 RLLDRDMDIRDVPDFE 377


>gi|291165171|gb|ADD81190.1| vasa [Scomber australasicus]
          Length = 645

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 183/361 (50%), Gaps = 10/361 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 207 IMTFDEAQLCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 266

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 267 LQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 326

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + RD++ G +IV GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 327 HQIRDIERGCNIVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGS 386

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   + V    
Sbjct: 387 PGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFS 446

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 447 KREQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADF 506

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 507 RSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 566

Query: 351 N 351
           +
Sbjct: 567 D 567


>gi|187736504|ref|YP_001878616.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426556|gb|ACD05835.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 400

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 177/368 (48%), Gaps = 9/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ + GY + T +QE  +   L  +D++ ++QTG+GKT AF L L        
Sbjct: 8   LSEPVLKAVEKCGYEHPTPIQEQAIPIILEGRDLIGASQTGTGKTAAFALPLL------- 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P   P  L + PTRELA QV          TG+ VA+  GGV   ++  DL+ GA 
Sbjct: 61  TRIQPIGKPQILVLEPTRELADQVAESFAEYGEFTGLKVALLYGGVGYGKQTEDLKKGAD 120

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH     +    +KA+VLDE D MLD+GF   +  I++  P + R  +F 
Sbjct: 121 IVVATPGRLVDHFYRCTMRFGEVKALVLDEVDRMLDMGFLPIVRKIVNLCPWEGRQTLFF 180

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   P +      +          +     + I +    VAL  RD  ++ +L+    ++
Sbjct: 181 SATMPPVIAGFAKWCLTDPAEVTIARREVAATISHAFYPVALDQRDELLLALLKGTDFRS 240

Query: 247 AIVFCSTRASVS--RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            ++F  TR              +  +V  +  ++ Q+ER  AL+  + G+  + +ATDVA
Sbjct: 241 VMIFTRTRKEADAVCGMLKHHGYRGEVAVMHSDIPQKERMEALKGFKSGKYDILVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+  +  N E+ +HR GRTGRA   G +  ++  +    A  +     
Sbjct: 301 ARGIDISGVTHVINYRVPENAEDYVHRIGRTGRAEASGDAFTIMTADELDFAAAVENFIG 360

Query: 365 VSVVWEPA 372
             +  +  
Sbjct: 361 KPIERKKL 368


>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
 gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
          Length = 448

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 215/420 (51%), Gaps = 17/420 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 19  KTFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPIL 78

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TLL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +  
Sbjct: 79  QTLLESPQR------LYALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSL 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P+
Sbjct: 133 ALAKKPHIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPR 192

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V I
Sbjct: 193 DRKTFLFSATMTKKVHKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYI 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++ Q +R  AL   +     + 
Sbjct: 253 LNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSIL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 372

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +    ++  +  EKK      A  D E
Sbjct: 373 IEHLIGKKLPAFPTQEEEVMMLNERVSEAQRFAR----IELREHGEKKKRPRNDADDDKE 428


>gi|150864621|ref|XP_001383517.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
 gi|149385877|gb|ABN65488.2| ATP-dependent rRNA helicase RRP3 [Scheffersomyces stipitis CBS
           6054]
          Length = 396

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/402 (30%), Positives = 204/402 (50%), Gaps = 14/402 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             +   T +Q   +   L  KD++  AQTGSGKT AF + +  +L      +        
Sbjct: 1   MKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPY------FG 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +AP RELA Q+    + L +  GV     +GG+ +  + RDL    HI++ TPGR+ D
Sbjct: 55  LVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMD 114

Query: 138 H-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           H    KG ++  LK  V+DEAD++LDL F   ++ IL   P KR   +FSAT++  I  L
Sbjct: 115 HLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSKRTTYLFSATMTNKIEKL 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +    + VRV ++S+ +   ++    +LV+   ++  ++++L     K+ I+F  TRA 
Sbjct: 175 QRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLLNEFVGKSIIIFARTRAH 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R + +     F  V L G+L+Q +R  +L   + G A + IATDVAARG+D+P +++V
Sbjct: 235 TQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       R+ +     +  +P+P   
Sbjct: 295 INYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYLRIEQSIQKKLPKDPSPPKA 354

Query: 377 AIRERD-------AQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +           A+ I Q   F +  +   +   D    +H
Sbjct: 355 MLDALHVHVDRAYAEAIRQTKEFHEKTRRGRRGKDDKDREEH 396


>gi|322788219|gb|EFZ14001.1| hypothetical protein SINV_14366 [Solenopsis invicta]
          Length = 423

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N  +   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  
Sbjct: 51  TFDNMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 110

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +            L ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 111 SLDTQ------VRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 164

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D I+ + L    +K +VLDE+DEML+ GF++ I  +    P   
Sbjct: 165 LDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPAT 224

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 225 QVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 284

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER N ++  R G++RV I
Sbjct: 285 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGQSRVLI 344

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+S+  +  +  R    +
Sbjct: 345 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDI 404

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 405 EQYYSTQIDEMPMNVADLI 423


>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
 gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
           21A-A]
          Length = 567

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 183/372 (49%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL +  +   T VQE  +   L+ KD+L  AQTG+GKT A+ L + S L   
Sbjct: 7   DLNDDVLDALYDMHFDKCTPVQEKCIPLILKGKDILAVAQTGTGKTAAYLLPILSKLAKG 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ--- 122
           N       A   + ++PTRELA Q+ + ++        +  V + G +            
Sbjct: 67  NYAD---DAINCVIMSPTRELAQQIDQAIQGFSYYLNGISCVAVYGGNDGNRYDQEIKSL 123

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA+IV+ TPGRL  HI    +++S +   VLDEAD MLD+GF +DI+ I ++ PK  +
Sbjct: 124 SMGANIVIATPGRLISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKMIANNLPKSCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I +LA         +   + ++    I   A +   + +   I  I + 
Sbjct: 184 TIMFSATMPNKIESLA-KSLLKNAEIIKLAVSKPAEKIQQSAYICYETQKIGIIKEIFKS 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  ++  V + T  L +   +   +  +L Q +R + +   +  +  V +AT
Sbjct: 243 GNLKRVIIFSGSKQKVKKITASLNKQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + +        +  
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDVEDYVHRIGRTARADREGNAITFVSEEDIYYFRHIES 362

Query: 362 EANVSVVWEPAP 373
               ++  +P P
Sbjct: 363 FLKKTIDKKPLP 374


>gi|193669397|ref|XP_001951491.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Acyrthosiphon
           pisum]
          Length = 401

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 201/381 (52%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N  + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+
Sbjct: 27  LTTFDNMKLREDLVRGIYSYGFERPSAIQQRAIKPMIKGRDVIAQAQSGTGKTATFSIAM 86

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++ ++            L ++PTRELAVQ+ + +  L     V    CIGG ++  + 
Sbjct: 87  LQSIDSQ------LRDTQVLCLSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNLGEDL 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HIV GTPGR+ D IR K L   ++K +VLDEADEML+ GF++ I  +    P 
Sbjct: 141 RKLDFGQHIVSGTPGRVFDMIRRKALRTRNIKTLVLDEADEMLNKGFKEQIYDVYRFLPP 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 201 ATQVILISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FCST+  V   T+ + E  F V ++ G++ Q+ER   ++  R G+ RV
Sbjct: 261 LYDTLTITQAVIFCSTKRKVDWLTEKMRESNFTVSSMHGDMPQKERDAIMKEFRAGQTRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 321 LITTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 380

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 381 DIEQYYSTQIDEMPMNVADLI 401


>gi|225684976|gb|EEH23260.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb03]
 gi|226294288|gb|EEH49708.1| ATP-dependent RNA helicase FAL1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 399

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 545

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 60  STLLAEND-----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L A                 AL + PTRELA QV   +        +   V  GGV +
Sbjct: 61  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 120

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 121 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 181 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 241 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGT 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 301 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 360

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 361 LLRDIERLIKRELPRTVLEGFEPDPTI 387


>gi|207727993|ref|YP_002256387.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 559

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 17  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 76

Query: 60  STLLAEND-----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L A                 AL + PTRELA QV   +        +   V  GGV +
Sbjct: 77  HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 136

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 137 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 196

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 197 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 256

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 257 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGT 316

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 317 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 376

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 377 LLRDIERLIKRELPRTVLEGFEPDPTI 403


>gi|119582644|gb|EAW62240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_c [Homo
           sapiens]
          Length = 1032

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 464

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 196/370 (52%), Gaps = 5/370 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   + +A++E GY + T +QE  +   L  +D+L SAQTG+GKT +F L + 
Sbjct: 1   MKFSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L +   +   A  P +L +APTRELA QV    E       + +A+ IGGVS   +  
Sbjct: 61  DILASGRAK---ARMPRSLILAPTRELAAQVAESFEKFSTHHKLNMALLIGGVSFSDQNT 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRL DH     + ++ +K +V+DEAD MLD+GF  D+E I+   P  
Sbjct: 118 ALDKGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRMLDMGFIPDVERIVSLLPPL 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT+S  I  ++  +  +   + +A        +        +  +   + ++L
Sbjct: 178 RQTLFFSATLSDDIHKISHKFVSNPKIIEVAPPASTADTVAQHLQWTDVKSKRAVLRDLL 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    KNA++FC+ +  +S   K L +H F  VA+ G+++Q  R  AL   + G   + I
Sbjct: 238 RVETVKNAVIFCNRKRDISTLVKSLTKHEFSAVAMHGDMTQSARLEALDKFKKGEVPLLI 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAER 358
           A+DVAARG+D+  L  V + ++  N E+ +HR GRTGRAG+ G +  +   ++ +R    
Sbjct: 298 ASDVAARGLDIAGLSHVFNFDVPMNAEDYVHRIGRTGRAGKSGRAFTIAAGKDDKRYISA 357

Query: 359 LFREANVSVV 368
           +      ++ 
Sbjct: 358 IESLIGKTIP 367


>gi|255037844|ref|YP_003088465.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254950600|gb|ACT95300.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 445

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/419 (27%), Positives = 192/419 (45%), Gaps = 24/419 (5%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   + + +  A+ E GY   T +QE  +   L  +D+L  AQTG+GKT A+ L L 
Sbjct: 6   NTFEQFKLNRQLLNAIEEAGYTEPTPIQEQAIPVALAGQDILGIAQTGTGKTAAYTLPLL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     +++    P AL +APTRELA+Q+   +  L   T +   V  GGV    +  
Sbjct: 66  MRI-----KYAQGQHPRALILAPTRELAMQISEAIAQLSKYTDIRTVVLYGGVGPKTQIE 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGR  D    + + + HL  +VLDEAD+M+D+GF   I  +L+  P+K
Sbjct: 121 AIRKGVDIIVATPGRFMDLYFQEEIVVKHLNVMVLDEADKMMDMGFMPQIRKLLEVIPRK 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT S  +  L+  + +   R+ +  +      +      V        +++ L
Sbjct: 181 RQNMLFSATFSGKVENLSYEFLEFPTRIEVTPQATAAEMVTQVLYEVPNFRTKINLLSYL 240

Query: 240 RYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVV---ALSGELSQQERSNALQMMRDGR 294
                     +VF  +R       + L   +        +     Q  R NA++  R+G 
Sbjct: 241 LEDKEALTRVLVFTRSREVAGLVHQNLLNRVVPEAELRVIHANKGQNTRINAMEAFREGN 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDV ARGID+ ++  V++ ++    E+ +HR GRTGRA   G ++  +    + 
Sbjct: 301 VRVMVATDVVARGIDITEVSHVVNFDVPLIYEDYVHRIGRTGRANNVGNAITFMTIADEY 360

Query: 355 RAERLFREANVSVVWEPAPSV------------EAIRERDAQRILQDPLFLDSIQGDEK 401
              ++     + +     P              + +RE D QR  +DP F  +    + 
Sbjct: 361 HIRKIEAMIRMEIPRAEFPDDVYIAETPFQERQDMLREIDNQRRKEDPTFKGAFHEKKH 419


>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
          Length = 445

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 194/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +    +   +++Q+  + P L+ +DV+  AQ+G+GKT  F +++
Sbjct: 39  ITSFDQMGLKEDLLRGIFAYNFEKPSAIQQRAIAPILKGRDVIAQAQSGTGKTATFSISV 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+       +      AL ++PTRELA Q+   +  L     V    CIGG S+  + 
Sbjct: 99  LQTID------TTRRQTQALILSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDI 152

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+V GTPGR+ D I+ + L    +K ++LDEADEML  GF++ I  +    P 
Sbjct: 153 RKLDHGQHVVSGTPGRVFDMIKRRNLQTRDIKMLILDEADEMLSKGFKEQIYDVYRYLPP 212

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  D VRV +  +      I    V +     + + + +
Sbjct: 213 STQVVILSATLPHDVLDMTSKFMTDPVRVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T+ + E  F V A+ GE+ Q+ER   +Q  R G +RV
Sbjct: 273 LYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQEFRSGASRV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +  +      
Sbjct: 333 LITTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVKNDDVNILR 392

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 393 DIEQYYSTQIDEMPM 407


>gi|301754307|ref|XP_002912967.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Ailuropoda melanoleuca]
          Length = 1031

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
 gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
          Length = 425

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELNLEEGVLQALDAMRFEECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHR 116
           + L   +    P  A   + ++PTRELA Q+ +++E              GG       +
Sbjct: 61  NQL---SKGGYPEDAINCVIMSPTRELAQQIDQQMEGFSYFLPASSVAVYGGNDGVRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFSDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V +   + ++    I   A +     +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKTILNNPVEI-KLAVSKPAEKIIQTAYICYERQKLGIIQ 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   T+        V  +  +L Q +R   ++  + GR  
Sbjct: 237 SLFQDQTPERVIIFASSKLKVKEVTQAFKRMKLNVGEMHSDLEQSQREQIMREFKSGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ +RGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 ILIATDIVSRGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANHDGCAITFVSEKEQPQF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +      ++   P P 
Sbjct: 357 KAIENFLGRNIYKIPVPE 374


>gi|301093191|ref|XP_002997444.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
 gi|262110700|gb|EEY68752.1| ATP-dependent RNA helicase eIF4A, putative [Phytophthora infestans
           T30-4]
          Length = 411

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 198/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  ++ + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +++
Sbjct: 37  IETFDGMDLREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFAVSI 96

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL +APTRELA Q+ + +  +     V V  C+GG +V  + 
Sbjct: 97  LQKIDIN------LKETQALILAPTRELAQQIVKVVVAIGDYMSVQVHACVGGTAVRDDI 150

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G HIVVGTPGR+ D I  + L    +K  VLDEADEML  GF+D I  +    P+
Sbjct: 151 RTLQQGVHIVVGTPGRVGDMINRRALRTDEVKMFVLDEADEMLSRGFKDQIYEVFRFLPE 210

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           K ++ +FSAT+   +  +   + ++ +R+ +  +      I    + +     + + + +
Sbjct: 211 KVQVALFSATMPLDVLEVTHRFMREPIRILVKRDELTLEGIKQFFIAIDREEWKFDTLCD 270

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV
Sbjct: 271 LYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMEQRERDIIMREFRSGSSRV 330

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  N  R   
Sbjct: 331 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFLTHNDVRYLR 390

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  N  +   P    + I
Sbjct: 391 DIEQFYNTQIDEMPMNVADLI 411


>gi|148701846|gb|EDL33793.1| mCG19408 [Mus musculus]
          Length = 615

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L   
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++ +         P+ L +APTRELA QV +          +      GG     + R
Sbjct: 154 VHIIHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 212

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 213 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ LM+SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLILL 332

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    ++     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLSEFKHGKA 392

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 393 SILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
           A  L    REAN ++  +    VE 
Sbjct: 453 ASDLISVLREANQAINPKLLQLVED 477


>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 570

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 190/369 (51%), Gaps = 3/369 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT +F L +   L A  
Sbjct: 15  LSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMIEILAAGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P +L +APTRELA QV    +       +  A+ IGG S+  +   L  G  
Sbjct: 75  AK---ARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALIIGGESMSDQIAILDRGVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + ++ +K +V+DEAD MLD+GF  D++ I+   PK R+ L FS
Sbjct: 132 VLIATPGRLLDMFDRGRILLNDVKVLVIDEADRMLDMGFIPDVQRIVSMLPKMRQTLFFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  +  +   +++++++     ++    +V   D+   + +I+R    KN
Sbjct: 192 ATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVDHIDKRETLRHIIRIENLKN 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A +FC+ +  V    K L +H F VV + G++SQ  R  +L   + G AR+ + +DV AR
Sbjct: 252 AFIFCNRKRDVDILFKSLKKHGFDVVQMHGDMSQPARLESLAKFKSGEARLLVCSDVVAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V + ++  + E+ +HR GRTGRAG  G +  +      R    +       
Sbjct: 312 GIDIKAVSHVFNFDVPIHAEDYVHRIGRTGRAGETGKAFTIASPEDGRFVAAIEGLIGQG 371

Query: 367 VVWEPAPSV 375
           +       V
Sbjct: 372 LPRMEVEGV 380


>gi|73971268|ref|XP_531911.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Canis familiaris]
 gi|194219918|ref|XP_001918233.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX46
           (DEAD box protein 46) (PRP5 homolog) [Equus caballus]
          Length = 1031

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|73969111|ref|XP_850120.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 2 [Canis
           familiaris]
          Length = 652

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 189/374 (50%), Gaps = 10/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ + E   + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+R  G+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L
Sbjct: 397 DVASRGLGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 456

Query: 360 FR---EANVSVVWE 370
            +   EAN ++  +
Sbjct: 457 IKVLEEANQAINPK 470


>gi|126644118|ref|XP_001388195.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117268|gb|EAZ51368.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
          Length = 586

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 171/381 (44%), Gaps = 12/381 (3%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F     P  + +AL   G+   T++Q       L   D++  A+TGSGKT+ F L  
Sbjct: 167 ITSFVTSGFPNFLVDALYRTGFTEPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPA 226

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTREL  Q+  +     +   +      GGV    ++
Sbjct: 227 MIHIRAQ-PLLRYGDGPICLVLAPTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQ 285

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++NG  I +  PGRL D +     N+S +  +VLDEAD MLD+GF   I  ++     
Sbjct: 286 ASIRNGVEICIACPGRLIDLLEEGYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRP 345

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA------SENRQHSDIDYRAVLVALSDRD 232
            R+ L++SAT    +  LA++  K+               +                 + 
Sbjct: 346 DRQTLLWSATWPKEVQKLARDLCKEIPIHINVGSVDALKASHNIKQYVNVVEESEKKAKL 405

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +  +    A   ++FC T+      TK L    +  + + G+  Q+ER+  L   R 
Sbjct: 406 KMFLGQVMVESAPKVLIFCETKRGADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRT 465

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G + + IATDVAARG+D+ D+  VI+ +  +  E+ +HR GRTGRAG  G+S+     + 
Sbjct: 466 GASPIMIATDVAARGLDIKDINFVINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDK 525

Query: 353 QRRAERL---FREANVSVVWE 370
            R A  L    +EA   V  E
Sbjct: 526 YRMASDLIKVLKEAKQRVPPE 546


>gi|321456211|gb|EFX67324.1| hypothetical protein DAPPUDRAFT_302036 [Daphnia pulex]
          Length = 797

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 133/573 (23%), Positives = 251/573 (43%), Gaps = 50/573 (8%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 144 MEILKKLAYEKPTPIQTQTIPAIMSGRDIIGIAKTGSGKTLAFLLPMFRHIL-DQPALEE 202

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+A+ ++PTREL +Q+G+E +       + V    GG  +  +  +L+ GA I+V T
Sbjct: 203 TDGPIAIIMSPTRELCLQIGKECKRFTKSLNLRVVTVYGGTGISEQIAELKRGAEIIVCT 262

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  +VLDEAD M D+GF   +  I+D++   R+ +MFSAT
Sbjct: 263 PGRMIDMLAANNGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNTRPDRQTVMFSAT 322

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V + +   +   +D++   +++    +   ++ +L  +  + + 
Sbjct: 323 FPRQMEALARRILNKPVEITVGGRSVVCADVEQHVLVMEDEQKFLKLLELLGVYQEQGSV 382

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF   + S     K L +  +  ++L G + Q +R +A+   ++G+ ++ IAT VAARG
Sbjct: 383 LVFVEKQESADDLLKDLMKAGYDCISLHGGIDQYDRDSAVVDFKNGKIKLMIATSVAARG 442

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  + QR A  + +    S 
Sbjct: 443 LDVKHLILVVNYDCPNHHEDYIHRCGRTGRAGNKGFAYTFITPDQQRAAGDIIKAMEQSE 502

Query: 368 VWEPAPSVEAIRERDAQRILQD-----------------PLFLDSIQGDEKKMVD---VL 407
              P   ++ + ++   ++  +                     +++   EKK      + 
Sbjct: 503 TPVPV-ELQTLWDQYKSKLAAEGKTVRSGGGGFSGKGFKFDESEAMAVSEKKKFQKAALG 561

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           L   D E I           + A   +  V   +          A      + D  + + 
Sbjct: 562 LQDSDEEDIENDLDEQIETLMAAKRIVREVQASTLVSGGGGSVAASIPSKTATDKLELAK 621

Query: 468 WF--SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +++ +KQ       +P +         SIGAI           + +  + L    
Sbjct: 622 RLASRINL-AKQSTGP---VPAI------PETSIGAIS----------ARNVAEQL--AA 659

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQD 558
           KL+  +    +  E+P     +  G  + +S D
Sbjct: 660 KLNTRLNYAPVESEEPMEGSVEEGGENTPSSSD 692


>gi|171059329|ref|YP_001791678.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776774|gb|ACB34913.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 479

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 189/378 (50%), Gaps = 4/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   Q I  A+ E GY   T +Q   +   L   D+L  AQTG+GKT  F L L  
Sbjct: 2   TFDDLGLAQPILRAVHEEGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPLLH 61

Query: 61  TLLAENDRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L A     +    P   AL + PTRELA QV   +        +   V  GGV +  + 
Sbjct: 62  KLAAGEPVKNRNGRPAIRALILTPTRELAAQVEESVRTYGKYLQLTSMVIFGGVGMGPQV 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL DH +   +++S ++  VLDEAD MLD+GF  DI+ +L   P 
Sbjct: 122 DRLRKGVDILVATPGRLLDHHQQGTIDLSQVQFFVLDEADRMLDMGFVHDIKKVLAIIPA 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT S  I  LA         + +A  N     I  R + V   ++ + + ++
Sbjct: 182 KKQSLLFSATFSDEIKALADRLLNKPQVIEVARRNTTAETIAQRVIKVGRENKKDLLAHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF   +   +R  + L ++    +A+ G  SQ  R+ AL   + G   V 
Sbjct: 242 IKSQNWHQVLVFTRMKHGANRLCEFLNKNDISAMAIHGNKSQGARTKALAEFKTGDLTVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  L  VI+ EL + PE+ +HR GRTGRAG +G ++ ++  + +     
Sbjct: 302 VATDIAARGIDIDMLPHVINYELPNVPEDYVHRIGRTGRAGAQGEALSLVCVDEEGFLAD 361

Query: 359 LFREANVSVVWEPAPSVE 376
           + +    S+  E     E
Sbjct: 362 IEKLIKRSIAREVVAGFE 379


>gi|41327773|ref|NP_055644.2| probable ATP-dependent RNA helicase DDX46 [Homo sapiens]
 gi|332821955|ref|XP_517939.3| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Pan
           troglodytes]
 gi|116241326|sp|Q7L014|DDX46_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=PRP5 homolog
 gi|15126766|gb|AAH12304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapiens]
 gi|119582645|gb|EAW62241.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_d [Homo
           sapiens]
          Length = 1031

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|168333928|ref|ZP_02692160.1| ATP-dependent RNA helicase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 472

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 140/465 (30%), Positives = 232/465 (49%), Gaps = 24/465 (5%)

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELAVQ+  E++ + A    + +    GG S+ ++   L+    IVVGTPGR+ D
Sbjct: 1   MLCPTRELAVQIATEMKKICAHKKDIGILAVYGGESIEKQLAGLRRRPQIVVGTPGRVMD 60

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+R K L +  LK +VLDEADEML++GFR+DI+ IL+S P+ R+ L+FSAT+  AI  +A
Sbjct: 61  HMRRKTLKLGALKMLVLDEADEMLNMGFREDIDTILESIPENRQFLLFSATLPKAIMEIA 120

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             YQ +AV++N   +      I    + V    +   +  ++  +  K  +VFC+T+  V
Sbjct: 121 NKYQTNAVKINTTKKQVTVKTISQHYLDVNEKKKSEVLARLIDSNNFKLMLVFCNTKKRV 180

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L    ++  AL G++ Q  R + +   R G   + IATDVAARGID+ D++ V 
Sbjct: 181 DDLCKDLMSRGYKAEALHGDMKQIHRDSVMNKFRRGIVDILIATDVAARGIDIDDVDAVF 240

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L  + E  +HR GRTGRA RKG S   +      +  ++ R  N  +     P+++ 
Sbjct: 241 NYDLPIDDEYYVHRIGRTGRANRKGTSYSFVCGKEIYKLRQIERYTNSKITKITIPTMDD 300

Query: 378 IRERDAQRILQDPLFLDSIQGDE-----------KKMVDVLLAKHD--PEKIAAGFLRIH 424
           I+      IL +    + I+  +            + ++    + D    ++AA FL + 
Sbjct: 301 IKGNKVNSILDE--IKEEIKEGKITTNLAFITQIAQELNAECEELDITSTEVAAAFLNVA 358

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
              +        V+  + R +  D     K       N KG     +++G+K K E+  L
Sbjct: 359 MKKM--------VTGSNPRVKLADLEHEDKKTTTYGYNEKGYKRLFINLGNKDKLESSQL 410

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +  +  ++ ++ + IG I +    +F+EV A  VD L   +   K
Sbjct: 411 VKFVASNTSVSGKEIGKIDMLDKFSFLEVPAKYVDELIAVLPKKK 455


>gi|152013506|sp|Q6BJX6|DHH1_DEBHA RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 516

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 196/444 (44%), Gaps = 10/444 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE+ P  + +   + E G+   + VQE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KTFEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                + ++        AL + PTRELA+Q  + +  L    G+   V  GG S+  +  
Sbjct: 90  QQARPKVNKI------QALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDIL 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  H++VGTPGR+ D    K  ++S     V+DEAD+ML   F+  IE IL   P  
Sbjct: 144 RLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTT 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQSLLFSATFPLAVKSFMDQHLTKPYEINLMDELTLRGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + E  +       ++ Q  R+      R G+ RV +
Sbjct: 263 SKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPEKIAA 418
            +E    +   PA   +++   + +  +  P  +D + +G+E              ++++
Sbjct: 383 EQELGTEIKPIPATIDKSLYVAENEAAVPRPFKIDQLPKGNETVHKKSGYEYKGQPEVSS 442

Query: 419 GFLRIHRAGLCAPEEITPVSLVSG 442
               + +     P     V+   G
Sbjct: 443 NVAGMPQQVPNGPVPPQQVNPSQG 466


>gi|154332025|ref|XP_001561829.1| nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059150|emb|CAM36848.1| putative nucleolar RNA helicase II [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 689

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 133/435 (30%), Positives = 203/435 (46%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +  ++ +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPIVVKALQSRGIESMFPVQALTFNAIMRNADVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      +    P A+   PTRELA+QV   L       G++V    GGV+   + R 
Sbjct: 147 RLLKLQSHLTRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLIVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                  T+   +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSTSAEKTVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     S+ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPSDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++        +    
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMEQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           L20]
 gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 445

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL+++GY   TSVQ   +   L  +D+L SA TG+GKT AF L    
Sbjct: 9   TFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  E +     T + +A   GGV+       
Sbjct: 69  HLLDYPRR--KPGAPRILILTPTRELAMQVAEEAQAFAEFTKLSIATITGGVAYQNHGEV 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 127 FNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
              +FSAT+   +     +   D      A  +R+      +       +  +   +  +
Sbjct: 187 HTWLFSATLEGELLVDFTDRILDNPLKIDAEPSRRERKKIQQWYYHADNVEHKTKLLARL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF   R  V   +  L +   +   L G+++Q +R+ A+  ++DG   V 
Sbjct: 247 ISTMEMEKAIVFVRRREDVRELSDTLRKRGLRSTYLEGDMAQTQRNQAIARLKDGVVNVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D++ VI+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   +
Sbjct: 307 VATDVAARGIDIDDVDYVINFDLPYSADTYLHRIGRTARAGKKGSAISLVEAHDYKLLGK 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 367 IKRYTEELLKPRVIEGLE 384


>gi|254706857|ref|ZP_05168685.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis
           M163/99/10]
 gi|254710035|ref|ZP_05171846.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis B2/94]
 gi|254714037|ref|ZP_05175848.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M644/93/1]
 gi|254716905|ref|ZP_05178716.1| ATP-dependent RNA helicase DDX17 [Brucella ceti M13/05/1]
 gi|256031530|ref|ZP_05445144.1| ATP-dependent RNA helicase DDX17 [Brucella pinnipedialis M292/94/1]
 gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
 gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis B2/94]
 gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M292/94/1]
          Length = 482

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa]
 gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa]
          Length = 735

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 153/566 (27%), Positives = 257/566 (45%), Gaps = 43/566 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + + L  RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  + 
Sbjct: 103 LPQRLVQTLQNRGITHLFPIQRAVLIPTLEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 162

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    +      P  L +APTRELA QV +E++        V     GGVS   ++  L 
Sbjct: 163 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYATQQNALS 220

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGR+ D ++G  L +  ++ +VLDEAD+ML  GF +D+E IL+S P KR+ 
Sbjct: 221 RGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILESLPSKRQS 280

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  LA+ Y  + ++++      E        Y     A S R      + 
Sbjct: 281 MLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAEGIKLYAISTTATSKRTILSDLVT 340

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y   +  I+F  T+   +    +         AL G++SQ +R   L   R G+  V +
Sbjct: 341 VYAKGEKTIIFTRTKR-DADEVSMALTQSIASEALHGDISQHQRERTLNGFRQGKFTVLV 399

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    L
Sbjct: 400 ATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTNSQRRTVRSL 459

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R+A     +   P++E + E   ++++     L+ +  +  +       K         
Sbjct: 460 ERDAGCKFEFVSPPAIEELLESSTEQVV---ATLNGVHPESVEFFTPTAQKL-------- 508

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
              I   G  A            R        + + G  +    +  ++      S+   
Sbjct: 509 ---IEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTY------SRGFL 559

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLKY 535
            AR +   L          IG I +  D        ++  +    L    +L  G  ++ 
Sbjct: 560 SARSVTGFLSDVYPAAADEIGKIHLIADERVQGAVFDLPEEIAKELLN-KQLPPGNTIEK 618

Query: 536 L--------GGEKPDFRGYKSSGFKS 553
           +         G   DF G  SS  + 
Sbjct: 619 ITKLPALQDDGPPSDFYGRFSSRDRP 644


>gi|218780301|ref|YP_002431619.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761685|gb|ACL04151.1| DEAD/DEAH box helicase domain protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 430

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 202/459 (44%), Gaps = 39/459 (8%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N    + +   +S  GY   T +QE  +   ++ +D++  AQTG+GKT AF L +   
Sbjct: 3   FTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPILHR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ +     P +   AL IAPTRELA Q    +  L A T +      GGV++ R+ + L
Sbjct: 63  LMQK-----PGNGVRALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              + IVV  PGRL DHI  K +++S ++ +VLDEAD+M D+GF  DI  IL   P+K R
Sbjct: 118 -KQSDIVVACPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGR 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +  +   PA              +           + +    VA   +   ++ +L  
Sbjct: 177 QTLMFSATMPAQIKRLAGEVLHNHVLVQIGHVAPADTVKHAFYPVAQHLKTALLLQLLGS 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G ++ +VF  T+    +    L +  F   +L G LSQ  R +A+   + G+ +V +AT
Sbjct: 237 TGTESVLVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ ++  VI+ ++ S PE  +HR GRTGRA R+G +   I  + ++    + R
Sbjct: 297 DIAARGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFITNDDRQMVRAVNR 356

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               +V                               +++ + D       PE       
Sbjct: 357 AVGSNV-------------------------------EQRTIHDFNYQASTPETGRQAAQ 385

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
              R  +   +       V  R +     RA +   G+ 
Sbjct: 386 ATPRQPMKKKKSRQDFPPVEVRRKSDSKRRANREAKGAF 424


>gi|16264922|ref|NP_437714.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
 gi|15141061|emb|CAC49574.1| putative ATP-dependent RNA helicase protein [Sinorhizobium meliloti
           1021]
          Length = 503

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 143/482 (29%), Positives = 230/482 (47%), Gaps = 16/482 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + I   LS  G+   T +Q   +   L++ D++  AQTG+GKT AFGL +
Sbjct: 1   MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+A+  R  P +   AL +APTREL  Q+   L+    K+ + + + +GGVS++++ 
Sbjct: 61  IEKLVADGRRPDPRN-IRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQT 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K + ++  + +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 120 EQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
            R+ L+FSAT+   I  LA  Y  D V+V ++   +    ++     V   D +   +  
Sbjct: 180 NRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    +++F  T+    +  K L    F+  ++ G  SQ +R  AL+  RDG  RV
Sbjct: 240 TLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L   P+  +HR GRT R GR G+++     +  R   
Sbjct: 300 LVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLR 359

Query: 358 RLFREANVSVVWE--PAPSVEA-IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + +   + +      AP+ +A   +    R    P      +G+          +  P+
Sbjct: 360 DIEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNGQPRGNGAGQRQGGPRRDRPQ 419

Query: 415 KIAAG-------FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKG 465
           + AA         LR  R+     +         GR     + +A K  G  G +   +G
Sbjct: 420 RQAAAGGFAGDELLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQARRG 479

Query: 466 SS 467
           S 
Sbjct: 480 SE 481


>gi|134095351|ref|YP_001100426.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739254|emb|CAL62303.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 449

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 190/369 (51%), Gaps = 3/369 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L    
Sbjct: 8   LADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSG 67

Query: 67  DRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              + ASA     AL + PTRELA QV   +        +  AV  GGV ++ + + L++
Sbjct: 68  TPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINPQIKLLKH 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  +L   PK R+ L
Sbjct: 128 GVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVLPKNRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT S  I  LA         + +A  N     I+ +   V    +   + ++++ + 
Sbjct: 188 LFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLAHLIKTNN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+   ++  + L +     +A+ G  SQ  R+ AL   +DG  +V +ATD+
Sbjct: 248 WSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +     + + +  
Sbjct: 308 AARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDMLKDIEKLI 367

Query: 364 NVSVVWEPA 372
              +  E  
Sbjct: 368 KRKLPSEVI 376


>gi|62089534|gb|AAH92240.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus]
          Length = 1027

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQEGGQSESFKRYEEE 936


>gi|268318337|ref|YP_003292056.1| DEAD/DEAH box helicase domain-containing protein [Rhodothermus
           marinus DSM 4252]
 gi|262335871|gb|ACY49668.1| DEAD/DEAH box helicase domain protein [Rhodothermus marinus DSM
           4252]
          Length = 505

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 133/424 (31%), Positives = 227/424 (53%), Gaps = 19/424 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ + +A    G+  L  VQ   L   L  +DV+V +QTGSGKT AF L L   L   
Sbjct: 44  ELPERMQQAARAIGWTELMPVQRRTLPYLLEGRDVIVQSQTGSGKTGAFLLPLFERLDPS 103

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWL----YAKTGVVVAVCIGGVSVHRERRDL 121
             +        AL + PTRELA Q+    E +         +   +  GGV    + + L
Sbjct: 104 RGQV------QALILTPTRELARQISEAFEQMKTGVSGAQSLRAVLVYGGVRYGPQLKAL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+GTPGR+ D I    L +  L+ +V DEADEML +GF   +  +    P++R 
Sbjct: 158 EQGAQVVIGTPGRILDLIERGALRLGALQVLVFDEADEMLSMGFYPAMRQLKRYLPRERN 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT+ P +  LA+ + KD   V+++++      I++R  +V   ++D A+V ++  
Sbjct: 218 TAMFSATMPPRVQALAREFLKDPAFVSLSTDRIAAETIEHRYFIVPPMEKDRALVQLIEL 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++AI+F +T+  V    + L  + +   A++G+L Q++R   +  +R G+ R+ +AT
Sbjct: 278 ENPESAIIFANTKRDVEYLGQFLKNYGYNADAITGDLPQKQRERIMDRLRKGQLRLLVAT 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ DL  V   ++  +PE  +HRSGRTGR G++G ++ ++    + R   + R
Sbjct: 338 DVAARGIDISDLSHVFMYDVPQDPEYYVHRSGRTGRVGKEGTTIVLVTPLEEARLRAIAR 397

Query: 362 EANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVD-----VLLAKHDP 413
           + ++ +     P+ E + ER A+R   +L+D  + ++   D +++         LA+ +P
Sbjct: 398 QYDIPLEKGTLPTPETVAERVAERAVALLEDR-YRETTSLDRERIARFVPLVEQLAQEEP 456

Query: 414 EKIA 417
           E +A
Sbjct: 457 ELLA 460


>gi|85540944|sp|Q569Z5|DDX46_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
          Length = 1032

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQEGGQSESFKRYEEE 936


>gi|262196937|ref|YP_003268146.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
 gi|262080284|gb|ACY16253.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
           14365]
          Length = 908

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 138/456 (30%), Positives = 229/456 (50%), Gaps = 16/456 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL E GY     VQ A+  P +  +DV+V ++TGSGKT  FG+ +   +    
Sbjct: 69  LQPELLQALEEMGYDRPMPVQAAVFQPLMNGRDVMVQSRTGSGKTAGFGIPVVQHID--- 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + +    AL +APTRELA+QV RE+  L    G+ +    GG  +  +   L  GA 
Sbjct: 126 ---AASKGAQALILAPTRELALQVSREIAQLAKPKGLHIEPIYGGAPIKPQMDALAAGAQ 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-- 184
           +V GTPGR+ DH+R K L+  +++ ++LDE DEML +GF+++IE I++  P K       
Sbjct: 183 VVSGTPGRVLDHLRRKTLDPKNIRMLILDECDEMLSMGFQEEIERIIEHLPAKENRQTVL 242

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   I  +A+ +  D   +++++ N    DID+   +V+   R   ++ +LR    
Sbjct: 243 FSATIPDEIQRIARRHMTDPEEISLSTGNISVDDIDHSYYVVSGVARTRDLLKVLRAESP 302

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+TR   +   K L    +   A+S +L+Q++R   ++ MRD      +ATDVA
Sbjct: 303 DSAIIFCNTREDTNTVAKFLQGQGYDAEAISSDLTQRDRERVMKRMRDRNLDFLVATDVA 362

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ DL  VI+     +PE  +HR+GRTGRAG+ G+++ ++          L     
Sbjct: 363 ARGIDISDLSHVINYTFPDSPEVYVHRTGRTGRAGKSGVAISLVGPRELGSFYYLKLIYK 422

Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +       P+ E +         +R+    L  +    D + +   +    + E+I    
Sbjct: 423 IRPEERDLPTNEEMGILDEGARFERVAA--LVSEEPGADSRALARRIWQSDEGERIFGAL 480

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           ++  R    AP E +  S     +  R ++R     
Sbjct: 481 VQ--RVLADAPSERSKRSRPKAENTQRSEARRSDER 514



 Score = 40.3 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 388 QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           +   F ++   ++ +  D    + D            R      E+ +     +     R
Sbjct: 760 EPKEFWETWADEKAERQDDTAERQDDT----AERPRRRRRRSRSEDASDSRASAAP---R 812

Query: 448 DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK---AEARWLMPMLCRSSGINRQ---SIGA 501
            +    +      D+   S+   ++VG ++    A+ R L+       G++      IG+
Sbjct: 813 GEETETETETEIEDSGNLSARLYVNVGKREGLSAAQVRDLLGE-----GLDDDTATRIGS 867

Query: 502 IRVQPDLTFVEVSADGVDLLRRTVK 526
           + ++    +V V  D  + +    +
Sbjct: 868 VALRNTHCYVRVPEDIANHVIAAAE 892


>gi|87119807|ref|ZP_01075704.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
 gi|86165283|gb|EAQ66551.1| DEAD/DEAH box helicase-like [Marinomonas sp. MED121]
          Length = 450

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 188/366 (51%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+ E GY   + +Q+  +   L   D++ +AQTG+GKT  F L L   L    
Sbjct: 8   LSKPILTAIKESGYSKPSPIQQQAIPAILESNDIMAAAQTGTGKTAGFTLPLLEIL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A+   AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 66  GAKANANQVRALVLTPTRELAAQVADSVATYGQHLNLRSDVVFGGVKINPQMMRLRKGTD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    K +    L+ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FS
Sbjct: 126 ILVATPGRLLDLYNQKAIRFDQLEVLVLDEADRMLDMGFIHDIKKVLALLPKRRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V V+++  N     + +    V   ++   +++++     + 
Sbjct: 186 ATFSDDIRQLAKGLMNNPVEVSVSPANAATPTVKHLLHPVDKKEKTALLIHLIVTQDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   ++  + L +      A+ G  SQ  R+ AL   ++   R+ +ATD+AAR
Sbjct: 246 ALVFSRTKHGANKIVQKLNDAGISAAAIHGNKSQGARTKALADFKNSDIRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++  +   + + + R     
Sbjct: 306 GIDIEQLPQVVNFDLPNVAEDYVHRIGRTGRAGATGKAVSLVSADEVDQLKDIERLIKKL 365

Query: 367 VVWEPA 372
           +  E  
Sbjct: 366 IPRETL 371


>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 408

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 195/379 (51%), Gaps = 5/379 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   + +A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF +   
Sbjct: 1   MQFSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P  A   L + PTRELA Q+  + E L  +T + + V  GG++    + 
Sbjct: 61  QYLL-DFPRRDPGFA-RVLVMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    I++ TPGRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +
Sbjct: 119 IFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNR 178

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           R+  +FSAT    ++   A+    D   +   S  ++ + I     L      +   +VN
Sbjct: 179 RQCFLFSATLEGDSVERFAEKTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVN 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AIVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+
Sbjct: 239 TLNGPDVTKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ ++  +      
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 358 RLFREANVSVVWEPAPSVE 376
           ++ R     +       VE
Sbjct: 359 KVERYVEQKLKRRVIKGVE 377


>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 446

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 138/445 (31%), Positives = 205/445 (46%), Gaps = 14/445 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +  A++ +GY   T +Q   +       D+L  AQTG+GKT AF L +   L  EN   
Sbjct: 11  ELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQML-GENIPP 69

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA QV  ++     +  +   +  GGV++  +   L  G  IVV
Sbjct: 70  EKRRRPRALVLVPTRELAAQVSEQMNNYARRLSLRSTMIYGGVNIQAQIERLHRGVDIVV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH     +N+S +K +VLDEAD MLDLGF D I+ + +  P KR+ L+FSAT 
Sbjct: 130 ATPGRLLDHAERGTVNLSRIKFLVLDEADRMLDLGFIDAIQKVAEYLPVKRQTLLFSATY 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S +I  LA        R+ +A  N     +      V  S +   +  ++        +V
Sbjct: 190 SQSIKQLADELLNKPRRIEVARSNIAADAVTQAIYQVEKSRKREMLSFLISRGKWNQVLV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR    + T+ L     +  A+    SQ  R+  L   R G  RV +ATDVAARG+D
Sbjct: 250 FARTRYGADKLTEELLYDGIKAAAIHSNKSQSIRNRTLAEFRRGEFRVLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVS 366
           +  L  V++ +L   PE+ +HR GRTGRAG++G+++ ++    Q   +  E+L + A   
Sbjct: 310 IEQLPHVVNYDLPQVPEDYVHRIGRTGRAGKEGIALSLVSHEEQPLLKAIEKLLKYAIPL 369

Query: 367 VVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
                 P   A++   A +I  D  P      +    K       +      A+   R  
Sbjct: 370 QTLAEFPQY-AVKRSGANKIKSDKGPSKARKREAIPAKQAKSPAKESKSPSKASSLSRKK 428

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDD 449
            A       I   +   GR R R+ 
Sbjct: 429 AA-------IERPAPKLGRRRSRER 446


>gi|77918349|ref|YP_356164.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
 gi|77544432|gb|ABA87994.1| DEAD helicase family protein [Pelobacter carbinolicus DSM 2380]
          Length = 433

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 200/371 (53%), Gaps = 5/371 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+P  +   +   G+  LT VQE  +   L +KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFTELNLPAEVQRGIDAMGFTALTPVQEQSIPLALDKKDVAAQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L+  +D+ +   AP AL +APTREL VQ+ ++   L    G  +    GGV   ++R+
Sbjct: 61  ARLM--SDKKTETRAPRALILAPTRELVVQISKDAMGLGQFCGFKIQPIFGGVDYEKQRQ 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--P 177
            L  G  I++ TPGRL D+++   +++  ++A+V+DEAD M D+GF  D+ +IL      
Sbjct: 119 ALHAGVDILIATPGRLIDYVKQGAVSLGSIEALVIDEADRMFDMGFIRDLRYILRKLPAF 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT+S  +  LA  +   A ++ +A EN     I+     V+  ++   ++ 
Sbjct: 179 DRRQTMLFSATLSHRVMELAYEFMDLAEKIKVAPENVTAEQIEEVLYHVSRREKFALLLG 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+   AK  ++F +T+      T  L  + F+   +SG++ Q++R   L   ++GR   
Sbjct: 239 LLKKEPAKCVMLFVNTKREAEHLTGRLQVNGFKAALISGDIPQKKRMRILDEFKEGRIHF 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG  G ++    +++     
Sbjct: 299 LVGTDVASRGIHVDGVTHVINYDLPQDREDYVHRIGRTARAGAAGKAISFADEDLVYYLA 358

Query: 358 RLFREANVSVV 368
            +       + 
Sbjct: 359 DIEDYIGHRIP 369


>gi|320322648|gb|EFW78741.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 442

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|321260432|ref|XP_003194936.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Cryptococcus
           gattii WM276]
 gi|317461408|gb|ADV23149.1| ATP-dependent RNA helicase DBP2 (p68-like protein), putative
           [Cryptococcus gattii WM276]
          Length = 537

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   +S+Q       L  +DV+  A+TGSGKT++F L  
Sbjct: 108 ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDVVAIAETGSGKTISFCLPA 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 168 MVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 227 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    +  LA ++  D ++VNI S +   + ++     +    D+ + +++
Sbjct: 287 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLS 346

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L     +N   ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 347 HLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 407 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKS 466

Query: 356 AER---LFREANVSVVWE 370
           A     + RE+   +  E
Sbjct: 467 ARELVQILRESKADIPPE 484


>gi|50293017|ref|XP_448941.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661092|sp|Q6FLF3|DBP2_CANGA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49528254|emb|CAG61911.1| unnamed protein product [Candida glabrata]
          Length = 544

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 188/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + +   G+   TS+Q       L  +D++  A TGSGKT+++ L  
Sbjct: 109 ITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 169 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L  GA IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 228 RELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++V I S     +   + +          DR   
Sbjct: 288 DRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQLVEVVSEFEKRDRLVK 347

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            ++          ++F ST+ +    T  L +  +  +A+ G+  Q+ER   L   R G 
Sbjct: 348 HLDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTGN 407

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  V++ ++  N E+ +HR GRTGRAG  G ++    ++ + 
Sbjct: 408 SPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKS 467

Query: 355 R---AERLFREANVSVVWE 370
                  + REA  ++  E
Sbjct: 468 LGASLISIMREAKQNIPEE 486


>gi|16331758|ref|NP_442486.1| ATP-dependent RNA helicase DeaD [Synechocystis sp. PCC 6803]
 gi|1001719|dbj|BAA10556.1| ATP-dependent RNA helicase; DeaD [Synechocystis sp. PCC 6803]
          Length = 492

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 134/487 (27%), Positives = 223/487 (45%), Gaps = 21/487 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   +   + L++ G+   T +Q   +   L  +D+L  +QTG+GKT AF L L 
Sbjct: 7   STFADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLM 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E D         AL + PTRELA QV   ++    +  + +    GG S+ R+ R
Sbjct: 67  DRIDPEGD-------LQALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIR 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGR+ D I  K L +  ++ VVLDEADEML +GF DD++ IL  +P  
Sbjct: 120 SLERGVQIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPT 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+   FSAT+   I  L   +  D        +++           +     +  A+  I
Sbjct: 180 RQTACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++AI+F  T+ + +  T  L E    V    G LSQ +R   +   RDG+ ++ 
Sbjct: 240 LEMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLV 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+ +L  V++ +L  N E  +HR GRTGRAG+ G ++ ++    +R    
Sbjct: 300 VATDIAARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRS 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM----VDVLLAKHDPE 414
           +       +     P+   +  +  +++ +     +++ G+        V  L  ++D +
Sbjct: 360 IENRLKQQIEVCTIPNRSQVEAKRIEKLQEQ--LKEALTGERMASFLPLVRELSDEYDAQ 417

Query: 415 KIAAGFLRIHRAGLCAP-----EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            IAA  L++     C        E+  V       R   ++   +   G     K     
Sbjct: 418 AIAAAALQMIYDQSCPHWMKSDWEVPEVDFNKPVLRRGRNAGGGQNKSGGGYQGKPGKPR 477

Query: 470 SLSVGSK 476
             S G +
Sbjct: 478 RSSGGRR 484


>gi|118579798|ref|YP_901048.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118502508|gb|ABK98990.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 475

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/417 (28%), Positives = 213/417 (51%), Gaps = 5/417 (1%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +P+ +   L++ G+V+ T +QE  L   L  KDV   AQTG+GKT AF + L 
Sbjct: 1   MKFSELPLPEPLQNGLADAGFVDCTPIQERTLPISLSGKDVAGQAQTGTGKTAAFLVTLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL ++        P AL +APTREL VQ+ ++ + L  + G+ +    GGV   ++R 
Sbjct: 61  TRLLKDSPP-EGTHHPRALILAPTRELVVQIEQDAQLLGRQCGLTIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +++GTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALREGADVIIGTPGRLIDYLKQKVYSLKQIEMLVIDEADRMFDMGFIADLRFILRRLPPF 179

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT++  +  LA  +     +V++  E     +++      +  ++   ++ 
Sbjct: 180 DKRQNLMFSATLNQRVMELAYEFMNMPEKVSVTPEKMTAENVEQVIYHASRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L+  + G   +
Sbjct: 240 LLRRDGMERTMIFINTKREGEYLHDRLNANGFPCRLISGDVDQKKRLRILEQFKSGELPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+ +  +  V++ +L  + E+ +HR GRT RAG +G ++ +  ++     E
Sbjct: 300 LIATDVASRGLHIDGVTHVVNYDLPQDCEDYVHRIGRTARAGAQGKAISLADEDGALYLE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRE-RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +       +  E A     + + +   R  + PL     +   ++       K  P
Sbjct: 360 AIEEYIKAKIPCEWAEDELFVTDFKRVARPKRAPLPSRGKEARPERGKTSSRQKRTP 416


>gi|332234495|ref|XP_003266442.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 [Nomascus
           leucogenys]
          Length = 1031

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 129/560 (23%), Positives = 252/560 (45%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|254693665|ref|ZP_05155493.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213932|ref|ZP_05928213.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915539|gb|EEX82400.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 482

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 130/376 (34%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 1   MTTFAELGLSPKVIAAVEAAGYTAPTPIQVGAIPPALERKDVLGIAQTGTGKTASFVLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 61  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFVKYGINHRLNVALLIGGVSFEEQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGR+ DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 118 RKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +    VR+ +A  +     +  R V     D D   V  
Sbjct: 178 TRQTLFFSATMPPEITKLTEQFLHSPVRIEVAKASSTAKTVTQRLVKSGKKDWDKRAVLR 237

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   +DG+
Sbjct: 238 DLIQSEGDSLKNAIIFCNRKKDVSELFRSLTRHEFDAGALHGDMDQRARMAMLSSFKDGK 297

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 298 LRLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGKAFTIVTSSDTK 357

Query: 355 RAERLFREANVSVVWE 370
               +       + W 
Sbjct: 358 YLAAIESMIGEKIEWH 373


>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
 gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
          Length = 451

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 212/399 (53%), Gaps = 11/399 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ +A  +  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +  +LL    R
Sbjct: 28  DVLCKACEQLKWAQPSKIQKEAIPVALQGKDVIGLAETGSGKTAAFALPILQSLLENPQR 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+  ++E L A  GV  AV +GG+ +  +   L    HI+
Sbjct: 88  Y------FALILTPTRELAFQISEQIEALGANIGVKCAVIVGGMDMMSQALILAKKPHIL 141

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++R   +FSA
Sbjct: 142 IATPGRLLDHLENTKGFNLKALKYLVMDEADRILNMDFEVEVDKILKVIPRERHTFLFSA 201

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 202 TMTKKVKKLQRACLRDPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNEMAGNSF 261

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L       V L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 262 MIFCSTCNNTIRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRG 321

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+ +     +
Sbjct: 322 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEQLIGKQL 381

Query: 368 VWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKK 402
                   E +    R  ++QR+ +  +     +  ++K
Sbjct: 382 PLYKTEEDEVMVLQERVAESQRLAKMEMKDLGDKKGKRK 420


>gi|313213311|emb|CBY37141.1| unnamed protein product [Oikopleura dioica]
          Length = 499

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 5/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   ++  GYV  T++Q       L   D+   A+TGSGKT+AF L     ++A+ 
Sbjct: 62  IPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSIIHIMAQP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P   P+A+ +APTRELA QV    E      GV      GG     +   L+ GAH
Sbjct: 122 D-LRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALERGAH 180

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL D I+    N+     ++LDEAD MLD+GF   I  I+    + R+ LMFS
Sbjct: 181 IVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFS 240

Query: 187 ATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K   ++ I   E   + +I+    +V+  D+        +   + 
Sbjct: 241 ATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFNYWFQQITST 300

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         ++    +  A+ G+  Q+ER   L+  R+G+  V +ATDVAA
Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFRE 362
           RG+D+ D+  VI+ +  S  E+ +HR GRT R  +KG S+  I     + A    +L  +
Sbjct: 361 RGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHASALVKLLEQ 420

Query: 363 ANVSVVWE 370
           A   V  E
Sbjct: 421 AKQHVPPE 428


>gi|149635102|ref|XP_001510775.1| PREDICTED: similar to DDX5 protein [Ornithorhynchus anatinus]
          Length = 682

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 168 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 227

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 228 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGV 286

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 287 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 346

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 347 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 406

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 407 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 466

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 467 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 526

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    +E 
Sbjct: 527 VLREANQAINPKLLQLIED 545


>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
           sapiens]
          Length = 448

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 217/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 17  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 77  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL  +P+
Sbjct: 131 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVNPR 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 191 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 251 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 311 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 370

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 371 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 427

Query: 415 KIA 417
           + A
Sbjct: 428 EGA 430


>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
 gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
          Length = 426

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/366 (33%), Positives = 195/366 (53%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L   L  ++
Sbjct: 8   LSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLHLLSQDS 67

Query: 67  DR-FSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +  S AS+P+ AL + PTRELA QV   +        +   V  GGVS++ +++ L+  
Sbjct: 68  LKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGR 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+
Sbjct: 128 VDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           F AT S  I  LA         + +A  N     +  +   +    + + + +++R    
Sbjct: 188 FFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+A
Sbjct: 248 YQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++  +       + +   
Sbjct: 308 ARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADIEKLIE 367

Query: 365 VSVVWE 370
             + +E
Sbjct: 368 KRLPFE 373


>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
 gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
          Length = 528

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 252/548 (45%), Gaps = 38/548 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    AL E+G    T +Q   L   L   DVL  A+TG+GKT+AF L +A  L    
Sbjct: 16  LSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAERL---E 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P AL +APTRELA+QV  ELEW+       +    GG     +   L+ GA 
Sbjct: 73  PSRTPGRPPRALVLAPTRELALQVAGELEWVAPHL--RIVTVYGGTGYGSQAAALKRGAD 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR  D++    L+++ ++  VLDEADEML +GF + +E +L ++P +R+ LMFS
Sbjct: 131 VVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLSMGFEEAVETLLGATPAERQTLMFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+      L   + K+   VN+  +          A+  + S R +A+ ++L  HG + 
Sbjct: 191 ATLPGWAKRLVGRHLKEPTVVNVVQDEEVSYREI--AIEASPSARMSALSDLLHAHGPER 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+       + L        A+ G+L+Q +R  ++   R G+  V +ATDVAAR
Sbjct: 249 AIVFTRTKKEADEVARALTARGHAAEAVHGDLNQTQRERSVGRFRSGQVGVLVATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+++LV+H  L    E+  HRSGRTGRAGR G  +       +R   +L R     
Sbjct: 309 GLDIPEVDLVVHLRLPERAESYQHRSGRTGRAGRSGTVIIFHSSRERRELGQLERAVGRK 368

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                AP+ E +++     +L+        + D     +V  A  + E + +    +   
Sbjct: 369 FEHGRAPAPEEVQQAKIAGLLRRAAA--QSEEDRAVWREVAQAWIEREDVESLAGLLAML 426

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
              AP    P SL++G + +R                       LS G          + 
Sbjct: 427 LGGAP---KPRSLLTGDEGWRTLELEAP---------------QLSAGK---------VV 459

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGY 546
            + + +G +   IG I++   + + +V A  +D L     L      K      P  R  
Sbjct: 460 AVLKRAGFS--DIGRIQLAGGVAYADVRAGELDRLDAVQGLRARPAAKVKAAPAPARRNE 517

Query: 547 KSSGFKSK 554
           +  G + +
Sbjct: 518 RPRGKRRR 525


>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
 gi|189433957|gb|EDV02942.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
           17393]
          Length = 428

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELQLNDQVLDALEAMRFDECTPIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   N    P  A   + ++PTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKLSEGNH---PEDAINCIVMSPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKKGLMLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA     +   V   + +R    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLANTILNNPAEV-KLAVSRPAEKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L      V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKMMKLNVGEMHSDLEQAQREEVMHEFKAGRVN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  I +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFINEKEQSNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +     P 
Sbjct: 357 KQIENFLEKEIYKIAVPE 374


>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
 gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
          Length = 462

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 138/408 (33%), Positives = 213/408 (52%), Gaps = 14/408 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +P      EAL+  GY ++T VQ   L   L+ +DV+  A+TGSGKT AFG+ L 
Sbjct: 4   TDFSALPLSPAQFEALTALGYEHMTPVQAQSLPLVLKGRDVIARARTGSGKTAAFGIGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRER 118
            T+   N RF       AL + PTRELA QV  EL  L      + +    GG     + 
Sbjct: 64  QTI---NPRF---FGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHIVVGTPGR+ DH++ K L++  LK +VLDEAD MLD+GF D +E I+  +PK
Sbjct: 118 GSLEHGAHIVVGTPGRILDHLQRKTLSLDGLKVLVLDEADRMLDMGFADSMESIISETPK 177

Query: 179 KRRMLMFSATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    I  ++    +   +             I+     V   +R+  ++ 
Sbjct: 178 SRQTLLFSATYPENIRKMSASIQRSPTMVTVDEDVGHADEVIEQLFFEVQKHERNTTLLA 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  ++   NA+VFC+T+       K+L E+  +  A+ G+L Q+ER   L    +    V
Sbjct: 238 LFEHYRPANAVVFCNTKKQCDEVAKILQEYDIEARAIHGDLEQRERDQVLVQFSNNSCPV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L +VI+ EL  +P+  +HR GRTGRAG  G+++ ++  +  +R  
Sbjct: 298 LVATDVAARGLDIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQRIR 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++          +  PS++    RD    L+ P+    +    K+ + 
Sbjct: 358 KIEEFQKQPCACDTLPSLD----RDPNYFLKAPMVTIQLDAGRKQKLR 401



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----DL 520
                 L  G KQK     ++  L   +G+    IG I +    +FV +  D +    + 
Sbjct: 386 PMVTIQLDAGRKQKLRPGDILGALTGDAGLVGTQIGKISIFDQWSFVALERDALRQAMNY 445

Query: 521 LRRTVKLDKGIQLK 534
           L       + I+++
Sbjct: 446 LANGKIKGRSIRVR 459


>gi|189207078|ref|XP_001939873.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|330936277|ref|XP_003305321.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
 gi|187975966|gb|EDU42592.1| ATP-dependent RNA helicase fal1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|311317725|gb|EFQ86604.1| hypothetical protein PTT_18129 [Pyrenophora teres f. teres 0-1]
          Length = 399

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TAVRETQALVLSPTRELATQIQSVIMGLGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R   +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + Q+  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|238502855|ref|XP_002382661.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
 gi|317027125|ref|XP_001400167.2| ATP-dependent RNA helicase FAL1 [Aspergillus niger CBS 513.88]
 gi|317148165|ref|XP_001822547.2| ATP-dependent RNA helicase FAL1 [Aspergillus oryzae RIB40]
 gi|152032452|sp|A5AAE5|FAL1_ASPNC RecName: Full=ATP-dependent RNA helicase fal1
 gi|220691471|gb|EED47819.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Aspergillus flavus NRRL3357]
          Length = 399

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|160380611|sp|A6ZRX0|DBP2_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|151944424|gb|EDN62702.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190409099|gb|EDV12364.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|259149249|emb|CAY82491.1| Dbp2p [Saccharomyces cerevisiae EC1118]
          Length = 546

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 188/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ 
Sbjct: 172 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G+ IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA +Y  D ++V + S     +   + I          DR N 
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  + 
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKG 470

Query: 354 --RRAERLFREANVSVVWE 370
              +   + REAN ++  E
Sbjct: 471 LGAKLISIMREANQNIPPE 489


>gi|99081650|ref|YP_613804.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037930|gb|ABF64542.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 493

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 219/473 (46%), Gaps = 32/473 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E GY + T +Q   +   L  +DVL  AQTG+GKT +F L +
Sbjct: 1   MTKFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLGIAQTGTGKTASFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R     +   L + PTRELA QV    +       +  A+ IGGVS   + 
Sbjct: 61  ITRLARGRARARMPRS---LVLCPTRELAAQVAENFDTYAKHVKLTKALLIGGVSFKEQD 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AAIDRGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRMLDMGFIPDIERIFSLTPF 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----- 233
            R+ L FSAT++P I  +   +     RV IA +     +I+   V+   S +D      
Sbjct: 178 TRQTLFFSATMAPEIERITNTFLSGPERVEIARQATTSENIEQAVVMFKASRKDREGSEK 237

Query: 234 ----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 +        +NAI+FC+ +  V    K L ++ +    + G+L Q +R+  L  
Sbjct: 238 RRVLRELINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLDG 297

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG  ++ +A+DVAARG+D+P +  V + ++  + E+ +HR GRTGRAGR G ++ +  
Sbjct: 298 FRDGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAEDYVHRIGRTGRAGRDGKAITLCS 357

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVL 407
              ++  +                +VE + +++  R+     P    +   DE       
Sbjct: 358 PRDEKALD----------------AVEGLVQKEITRLENPVKPTPRKTATKDEDAGDKPK 401

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            A+    K A+           A +    V     + +   ++RA +   G++
Sbjct: 402 PARRSRSKAASAKTDATPTPEAANDAAPQVEAPQQQPQEPKETRAEQPSAGAK 454


>gi|328876634|gb|EGG24997.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 197/385 (51%), Gaps = 4/385 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P  I   ++  G+   TS+Q       L+ +D++  A+TGSGKT+AF L     + 
Sbjct: 406 FSHFPSYIMSEIAVLGFTAPTSIQCQSWPIALKGRDMIGLAETGSGKTLAFLLPAIVHIN 465

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+         P+ L + PTRELA+Q+  E +   + + +      GGV  +++ + L++
Sbjct: 466 AQ-PYLETGDGPIVLVLTPTRELAMQIQNECDKFGSSSKIKNCCIYGGVPKYQQAQALRS 524

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D +   G N+  +  +VLDEAD MLD+GF D I  IL      ++ L
Sbjct: 525 GVEIVVATPGRLIDFLERGGTNLRRVTYLVLDEADRMLDMGFEDQIRKILGQIRPDKQTL 584

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT   ++ +LA ++  D ++V I S     +  +     +    D+   +   L+  
Sbjct: 585 MFSATWPKSVQSLAADFLVDPIQVKIGSAELSANHKVTQHIEICEKMDKQTKLFQYLKSI 644

Query: 243 GAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T++ V    + ++   F+  A+ G+ +Q ER  AL   +DG+ +  IAT
Sbjct: 645 EPGAKCIIFLETKSGVGMLARNMSYAGFKCEAIHGDKTQGERDFALSQFKDGKIQCLIAT 704

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +  +   +  R A  L  
Sbjct: 705 DVASRGLDVKDIKYVINYDFPNTIESYIHRIGRTGRAGATGTAYTLFTLDDMRLASDLVT 764

Query: 362 EANVSVVWEPAPSVEAIRERDAQRI 386
               +  + P P +E +     + I
Sbjct: 765 VLAEASQYVP-PQLEQMVPNKFKSI 788


>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
 gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 196/379 (51%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + EA     +   T +Q   + P L  +D++  AQTGSGKT AF + + + L  +
Sbjct: 78  NLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGLAQTGSGKTAAFAIPILNRLWED 137

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       A  +APTRELA Q     + L A  GV     +GG+++  + R+L    
Sbjct: 138 KQPY------YACVLAPTRELAQQTKETFDSLGALMGVRSTCIVGGMNMMDQARELMRKP 191

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI++ TPGRL DH+      ++  L+ +V+DEAD +LD+ F   ++ IL   P + R   
Sbjct: 192 HIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFGPVLDKILKVIPTQDRTTY 251

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L  + 
Sbjct: 252 LFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMVVPSGLKNTYLIYLLNENI 311

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F  T+A+  R + +     F   AL G+L+Q +R+ AL + + GR  + +ATDV
Sbjct: 312 GKTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVATDV 371

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q       R+    
Sbjct: 372 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 431

Query: 364 NVSVVWEPAPSVEAIRERD 382
              +  E       I  RD
Sbjct: 432 GKKLPKENCDKEVVISLRD 450


>gi|168021119|ref|XP_001763089.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685572|gb|EDQ71966.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 514

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 194/374 (51%), Gaps = 8/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  + P  +   + + G+   T++Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 93  VRTFEEASFPDYVLHEVLKAGFTEPTAIQAQGWPMALKGRDLIGLAETGSGKTLAYLLPA 152

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E     A + +      GG     + 
Sbjct: 153 IVHVNAQ-PYLAPGDGPIVLVLAPTRELAVQIQQESTKFGASSKIKNTCIYGGAPKGPQI 211

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  +V+ TPGRL D + G+  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 212 RDLQKGVEVVIATPGRLIDMLEGRHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L +SAT    +  LA+ +  D  +V I S + + +  ID    +V+  ++   ++ 
Sbjct: 272 DRQTLYWSATWPKEVEFLARQFLNDPYKVTIGSSDLKANHAIDQVVEVVSEHEKYPKLIK 331

Query: 238 ILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L      + + VF  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ 
Sbjct: 332 LLEEIMDGSRLLVFMETKRGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSP 391

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +  ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         + A
Sbjct: 392 IMTATDVAARGLDVKDIKCVINYDFPGSCEDYVHRIGRTGRAGAKGAAYTFFTAANAKHA 451

Query: 357 ER---LFREANVSV 367
           +    +  EA   V
Sbjct: 452 KELVSILVEAGQPV 465


>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
 gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
          Length = 510

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 135/475 (28%), Positives = 214/475 (45%), Gaps = 19/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL E+GY+N T +QE  +   L  +DVL  AQTG+GKT +F L +   L    
Sbjct: 33  LSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSR 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA+QV            +  A+ IGG S+  +R  L  G  
Sbjct: 93  AR---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVD 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D     GL +S ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 150 VLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFS 209

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P I  LA  +  +  ++ ++      + I     LVA  D+  A+  ++R    +N
Sbjct: 210 ATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQN 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+ +  V    K L  H F    L G++ Q  R   L+  + G  R+ + +DVAAR
Sbjct: 270 ALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + ++  + E+ +HR GRTGRAG +G ++ +     +   + +       
Sbjct: 330 GIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIELLIGHP 389

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +       ++ +   +A+                 +      A               RA
Sbjct: 390 IPRLAVDGLDPVEWEEAE--------------SRGRRRGGKPAAKAAPPAKKAPKPAARA 435

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                 E  PV   S     R   R           F       + +  +++A  
Sbjct: 436 ETPPAAEEQPVPRRSREPGNRRGGREDAGPREPVVGFGDDIPAFMQI--RRRARP 488


>gi|183979315|dbj|BAG30754.1| DEAD box polypeptide 5 [Papilio xuthus]
          Length = 539

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 189/381 (49%), Gaps = 12/381 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + +S  GY   T +Q       +   +++  AQTGSGKT+A+ L  
Sbjct: 106 IQHFEEGNFPDYVMQNISNMGYKEPTPIQAQGWPIAMSGHNLVGIAQTGSGKTLAYILPA 165

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+ +        + V      GG     + 
Sbjct: 166 IVHINNQPP-IRRGDGPIALVLAPTRELAQQIQQVACDFGNASYVRNTCVFGGAPKREQA 224

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 225 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA++Y  D +++NI S     + +I     +    +++N    
Sbjct: 285 DRQTLMWSATWPKEVKKLAEDYLGDYLQINIGSLQLSANHNILQIVDVCQEHEKENKLNV 344

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+  V   T+ +    +  V + G+ +QQER + L   + 
Sbjct: 345 LLQEIGQSQEPGAKTIIFVETKRKVENITRNIRRFGWPAVCMHGDKTQQERDDVLYQFKQ 404

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+  KG S      + 
Sbjct: 405 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 464

Query: 353 QRRAERL---FREANVSVVWE 370
            R+A+ L    +EAN ++  +
Sbjct: 465 SRQAKDLVNVLQEANQTISPQ 485


>gi|73969095|ref|XP_860442.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 5 [Canis
           familiaris]
          Length = 630

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 167/368 (45%), Gaps = 20/368 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    +        +       A                    R   ++  +      
Sbjct: 277 SATWPKEVRHFYIMCGEILSECIFAGLVF----------------RLIQLMEEIMAEKEN 320

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATDVA+
Sbjct: 321 KTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVAS 380

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR---E 362
           RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +   E
Sbjct: 381 RGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEE 440

Query: 363 ANVSVVWE 370
           AN ++  +
Sbjct: 441 ANQAINPK 448


>gi|328470214|gb|EGF41125.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus 10329]
          Length = 522

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/359 (35%), Positives = 185/359 (51%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++       +  +   +V +++    K 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFRE 362
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++     +     ERL +E
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEIGKAISLVCALEASELFAIERLIQE 364


>gi|321253117|ref|XP_003192635.1| hypothetical protein CGB_C1160C [Cryptococcus gattii WM276]
 gi|317459104|gb|ADV20848.1| hypothetical protein CNBC0850 [Cryptococcus gattii WM276]
          Length = 396

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 197/377 (52%), Gaps = 9/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + +   +    +   +++Q+  + P +R +DV+  AQ+G+GKT  F +++  
Sbjct: 24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++       +      AL ++PTRELAVQ+   +  L     V    CIGG SV  + R 
Sbjct: 84  SID------TNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V GTPGR+ D IR + L    +K ++LDE+DE+L+ GF+D I  I    P   
Sbjct: 138 LEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPAT 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 198 QVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T+ + E  F V ++ GE+ Q+ER   +   R G++RV I
Sbjct: 258 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L ++ EN LHR GR+GR GRKG+++  +  +  R    +
Sbjct: 318 TTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDI 377

Query: 360 FREANVSVVWEPAPSVE 376
            +  +  +   P    E
Sbjct: 378 EQYYSTQIDEMPMNVAE 394


>gi|58265474|ref|XP_569893.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108955|ref|XP_776592.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686072|sp|Q5KJJ2|FAL1_CRYNE RecName: Full=ATP-dependent RNA helicase FAL1
 gi|50259272|gb|EAL21945.1| hypothetical protein CNBC0850 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226125|gb|AAW42586.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 396

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 197/377 (52%), Gaps = 9/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + +   +    +   +++Q+  + P +R +DV+  AQ+G+GKT  F +++  
Sbjct: 24  TFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++       +      AL ++PTRELAVQ+   +  L     V    CIGG SV  + R 
Sbjct: 84  SID------TNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V GTPGR+ D IR + L    +K ++LDE+DE+L+ GF+D I  I    P   
Sbjct: 138 LEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPAT 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 198 QVVVVSATLPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCDLY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T+ + E  F V ++ GE+ Q+ER   +   R G++RV I
Sbjct: 258 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSSMHGEMVQKERDAIMAEFRGGQSRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L ++ EN LHR GR+GR GRKG+++  +  +  R    +
Sbjct: 318 TTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTVDDVRILRDI 377

Query: 360 FREANVSVVWEPAPSVE 376
            +  +  +   P    E
Sbjct: 378 EQYYSTQIDEMPMNVAE 394


>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
           98AG31]
          Length = 537

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 4/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   + +Q       L  +DV+  + TGSGKT+AF L     + A+ 
Sbjct: 114 FPDYIMAEIRKAGFTEPSPIQCQAWPMALSGRDVVAISATGSGKTIAFSLPAMIHINAQ- 172

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 173 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLSRGAE 232

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ IL+     R+ LMFS
Sbjct: 233 IVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQIRPDRQTLMFS 292

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA  Y KD ++VN+ S     + +I     + +  ++   ++  L    A+
Sbjct: 293 ATWPKEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVCSDFEKKGKLIKHLEKISAE 352

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +A  ++F  T+      TK L +  +  +A+ G+  Q ER   L   + GR+ + IATDV
Sbjct: 353 SAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQTERDWVLGEFKSGRSPIMIATDV 412

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAGR G +   I  +  + A  L +  
Sbjct: 413 ASRGLDVKDVAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQGKLARELVKIL 472

Query: 364 NVSVVWEPAPSVE 376
             +    P   VE
Sbjct: 473 QDAKQVVPPALVE 485


>gi|149909181|ref|ZP_01897838.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149807705|gb|EDM67651.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 192/371 (51%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + ++I +A++E GY   T +Q+  +   L  K+++ +AQTG+GKT +F L L    +  +
Sbjct: 36  LNKLITQAVAELGYEQPTPIQQKAIPAILSGKNLIAAAQTGTGKTASFVLPLLQ--MFSH 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL + PTRELA+QV   +E       +      GGV +  +++ L  G  
Sbjct: 94  KHTLRAKRIRALILTPTRELAIQVAENVEQYGKHLHLTSMAMYGGVDMDPQKQRLIEGVD 153

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L+   L+ +V+DEAD MLD+GF +DI  I++  P++R+ L+FS
Sbjct: 154 ILVATPGRLLDMAHQRALHFDELEVLVIDEADRMLDMGFVNDINKIIERLPQERQNLLFS 213

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK     A+ ++I  EN    +ID    +V    +   + +++  +  K 
Sbjct: 214 ATLSNKVRFLAKTAINYALEISIEPENTTAPEIDQWLTVVDKDVKSALLSHMIIENDWKQ 273

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  +     SQ  R   L   + G     +AT VA+R
Sbjct: 274 ALIFIETKRGAAKLVSQLEKRGIKAESFHSGRSQAMREQLLAEFKAGELSFLVATGVASR 333

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL+ V++ +L     + +HR GRTGRAG  G ++  + ++  R    + +  +  
Sbjct: 334 GIDIDDLDRVVNYDLPEEQADYVHRIGRTGRAGASGEAISFVSRDDFRNLCAIEQLLDHV 393

Query: 367 VVWEPAPSVEA 377
           +  +     EA
Sbjct: 394 IERKEVEGFEA 404


>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 420

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 190/372 (51%), Gaps = 4/372 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L L  
Sbjct: 2   SFSNLGLSDPILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPLLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                +     A    AL + PTRELAVQV   +        +      GGV    +++ 
Sbjct: 62  K--FSDMPPIRAKRIRALILVPTRELAVQVDANITQYSKHLSLTSLAMYGGVDYKDQKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G  I+V TPGRL D    + L+   L+ +VLDEAD MLD+GF +DI  IL+  PK+R
Sbjct: 120 LIDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRMLDMGFIEDINKILERLPKER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  +  LAK   +  V ++++ EN     ID   + V    +   + ++++
Sbjct: 180 QNLLFSATLSDQVRVLAKTAVERPVEISVSPENTTTPKIDQWLITVDKDKKSALLSHMIK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K A++F  T+   ++    L +      A+ G  SQ  R   L   + G   + +A
Sbjct: 240 ENEWKQALIFIQTKHGAAKLVGQLEKRGIVAEAIHGGRSQAVREKLLNDFKSGELGLLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T +AARGID+ DL  VI+ +L    ++ +HR GRTGRAG  G ++  + ++  R    + 
Sbjct: 300 TGIAARGIDIDDLTRVINYDLPDQADDYVHRIGRTGRAGATGEAISFVSRDDFRHLCAIE 359

Query: 361 REANVSVVWEPA 372
                 +V +  
Sbjct: 360 TRLGHLIVRKEI 371


>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 428

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  +   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK+   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKSILNNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIH 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KGIENFLEKEIYKIPVPE 374


>gi|193683325|ref|XP_001948746.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Acyrthosiphon pisum]
          Length = 985

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 197/377 (52%), Gaps = 7/377 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K++ +  + + I + L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +
Sbjct: 312 IKVWAHCGVSKKIMDNLKKHNYEKPTPIQTQAIPAIMAGRDLIGIAKTGSGKTLAFLLPM 371

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+A+ +APTREL +Q G+E        G+ V    GG  +  + 
Sbjct: 372 FRHIM-DQPPLEDTDGPIAIVMAPTRELCMQTGKEARKFTKSLGLRVVSVYGGTGISEQI 430

Query: 119 RDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +L+ GA I+V TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  ++D+
Sbjct: 431 AELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRVIDN 490

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R+ +MFSAT    +  LA+   +  V V I   +    +++   ++V    +   +
Sbjct: 491 VRPDRQTVMFSATFPRQMEALARRILQKPVEVQIGGRSVVAKEVEQHVIIVEEEQKFMKL 550

Query: 236 VNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +L  +  + + IVF  T  +     + L +  +  ++L G + Q +R + +   + G+
Sbjct: 551 LEVLGVYYERGSCIVFVDTHENADTLLQKLLKASYPCMSLHGAIDQYDRDSTIVDFKSGQ 610

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +AT VAARG+D+ DL LV++ +  ++ E+ +HR GRTGRAG KG +  ++  + +R
Sbjct: 611 IKLLVATSVAARGLDVKDLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTLVSPDQER 670

Query: 355 RAERLFREANVSVVWEP 371
            A  L R    S V  P
Sbjct: 671 FAGDLIRALETSNVPVP 687


>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  199 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 194/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +    
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWHQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 367 LQRREEPDFE 376


>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
 gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
          Length = 500

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 200/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + I  ++++ GY   T +Q   +   L  +D++  AQTG+GKT AFGL +
Sbjct: 9   LTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI 68

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ + DR +       L +APTREL  Q+G  L     KT + +   +GG S+++++
Sbjct: 69  IEMLMKQADRPA-NRTTRTLILAPTRELVNQIGENLRSFVKKTPLRINQVVGGASINKQQ 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL D I    +++S +  +VLDEAD+MLDLGF  D+  I    P 
Sbjct: 128 LQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPA 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ L+FSAT+  AI+ LA N+  D ++V +    +    ++     VA  + + + +  
Sbjct: 188 KRQTLLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKK 247

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    +IVF  T+    +  K L    F+V ++ G  SQ +R  AL+  +DG  +V
Sbjct: 248 SLNENPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKV 307

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  R   
Sbjct: 308 LVATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLH 367

Query: 358 RLFREANVSVV 368
            + +   + + 
Sbjct: 368 DIEKLMKIDIP 378


>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
          Length = 705

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 10/390 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 108 IQAFEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPA 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R +    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 168 TVHINHQ-PRLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQA 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 227 RDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R++LM+SAT    +  LA+++  D +++NI S     N     I           + + 
Sbjct: 287 DRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLSLAANHNIRQIIEICQEHEKEYKLSQ 346

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+
Sbjct: 347 LLREIGTERGSKMIIFVETKKKVDDITKTIKRDGWSAISIHGDKSQPERDYVLSEFRNGK 406

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 407 TMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 466

Query: 355 RAERL---FREANVSVVWEPAPSVEAIRER 381
           +A+ L     EA  ++  + A    ++R +
Sbjct: 467 QAKELIAVLEEAGQTINPQLADIANSMRNQ 496


>gi|90578695|ref|ZP_01234505.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
 gi|90439528|gb|EAS64709.1| putative ATP-dependent RNA helicase, DEAD boxfamily protein [Vibrio
           angustum S14]
          Length = 427

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 195/387 (50%), Gaps = 17/387 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL+E GY   T VQ+  +   L+  DV+  AQTG+GKT AF L L   L+  
Sbjct: 7   NLHPNLLKALTELGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFALPLLQRLMTL 66

Query: 66  NDR-----------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             +               +   AL + PTRELA QV   +      T + VAV  GG S+
Sbjct: 67  PSQAEQVSTAIENNHKSRNNIRALILTPTRELAQQVYDSITTYAKYTEIKVAVAYGGTSM 126

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + + + L  GA I+V TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 127 NVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMK 186

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P +R+ L FSAT S  +  LA +   +   V +   N     ++     V    +   
Sbjct: 187 RMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQMVYPVDKHRKAEL 246

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++     +  +VF  T+    +  K L     +  +++G+ SQ  R  AL   + G+
Sbjct: 247 LAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGK 306

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARG+D+  LE V++ ++    E+ +HR GRTGRAG  G ++ ++  + + 
Sbjct: 307 TRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDEEW 366

Query: 355 RAERLFREANVSVV------WEPAPSV 375
             + +    +  +       +EP P++
Sbjct: 367 ALKAIEELLDSRLPQQWLEGYEPDPAL 393


>gi|307110010|gb|EFN58247.1| hypothetical protein CHLNCDRAFT_30080 [Chlorella variabilis]
          Length = 551

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 8/377 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P+ +   +   G+   + +Q       L  +D++  A+TGSGKT+A+ L  
Sbjct: 127 VSNFEEASFPEYVLAEIQRAGFTEPSPIQAQGWPMALLGRDLVGIAETGSGKTLAYLLPG 186

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+  E     + + +      GG     + 
Sbjct: 187 VVHINAQAH-LSPGDGPIVLCLAPTRELAVQIQNECARFGSTSRIKSTCVYGGAPKGPQA 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 246 NDLRRGVEIVIATPGRLIDFLESRTTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 305

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L++SAT    I TLA+ +  +  +V I S + + +  I       A  ++   +V 
Sbjct: 306 DRQTLLWSATWPKEIQTLAREFLNNPYQVLIGSPDLKANHRITQIFDFPAEHEKYQKLVR 365

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +  +    +  ++F  T+      T+ L    +  +++ G+ SQ ER   L   + G+  
Sbjct: 366 VLEKEMDGRRILIFLETKKGCDAVTRQLRMDGWPALSIHGDKSQHERDWVLAEFKAGKHP 425

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQ 353
           + IATDVAARG+D+ D+++VI+ ++ S  E+ +HR GRTGRAG  G +          M 
Sbjct: 426 IMIATDVAARGLDVKDIKMVINYDMPSCAEDYVHRIGRTGRAGASGAAYSFFTAANGRMA 485

Query: 354 RRAERLFREANVSVVWE 370
           R+  ++  EA+ +V  E
Sbjct: 486 RQLVQILEEASQAVPPE 502


>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 510

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 136/406 (33%), Positives = 209/406 (51%), Gaps = 30/406 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I +AL+E GY + T VQE  +   +  +D+LVS+QTGSGKT AF L    
Sbjct: 2   TFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSLH 61

Query: 61  TLLA----------------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
            L                        E  R+ PA  P  L + PTRELA+QV    +   
Sbjct: 62  QLADLPPAPQAARTPNQERQASRARGERPRYQPAQ-PKMLVLTPTRELALQVTTATDKYG 120

Query: 99  AKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           A    V  V  +GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEA
Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF DDIE I+ ++P  R+ ++FSAT+   +  +AK    + + + IAS + +H 
Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240

Query: 218 DIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +I  R   V   S ++  + ++LR      A++F +T+         L    F   AL G
Sbjct: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q  R+  L  +R G+ R+ +ATDVAARGID+P +  V + +L    E+ +HR GRTG
Sbjct: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           RAGR G+++ ++      + +R+ R    ++   P   VE    + 
Sbjct: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTI---PVDVVEGFEPKK 403


>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
 gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 646

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 138/391 (35%), Positives = 204/391 (52%), Gaps = 17/391 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  ALSE  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L     +    
Sbjct: 65  LDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMP 124

Query: 63  ----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIG 110
                       +  R  P+ A P  L + PTRELA+QV             +  A  +G
Sbjct: 125 APQRATEPAKRMKGKRPRPSPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASILG 184

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+   ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+
Sbjct: 185 GMPYPKQLAALAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDID 244

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALS 229
            I++++P  R+ LMFSAT+   I  LA    +D  R+ IA+     S I+ R      +S
Sbjct: 245 AIVNATPATRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADQSHIEQRLHFTDDMS 304

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  
Sbjct: 305 HKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTA 364

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G ++ ++ 
Sbjct: 365 LRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGTAINLVN 424

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            N   + +R+ R  N  +       +E  R 
Sbjct: 425 HNDMFQWKRIERFTNQRIDASVIEGLEPRRS 455


>gi|212534920|ref|XP_002147616.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|212534922|ref|XP_002147617.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|242791505|ref|XP_002481771.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
 gi|210070015|gb|EEA24105.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|210070016|gb|EEA24106.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Penicillium marneffei ATCC 18224]
 gi|218718359|gb|EED17779.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 399

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LEYGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
 gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
           18228]
          Length = 423

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+   + +AL    +   T VQE  +   L  KD++  AQTG+GKT A+ L + 
Sbjct: 1   MQFSELNLEDSVLDALDAMNFRECTPVQEHTIPVILEGKDLIGVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + L   N    P  A   + +APTRELA+Q+ +++E                  G+   +
Sbjct: 61  NQLSKGN---YPEDAINCIIMAPTRELAMQIDQQMEGFSYFMPASSVAVYGGNDGIRFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E++ L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF +DI  I+   
Sbjct: 118 EKKGLTLGADVVIATPGRLISHLSLGYVDLSKVSFFILDEADRMLDMGFAEDIMQIVKYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK    + V V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPTKIQQLAKTILTNPVEV-KLAVSKPAEKIIQAAYICYEAQKLGIIE 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++ +    +  I+F S++  V   TK L      V  +  +L Q +R   +   R+GR  
Sbjct: 237 SLFKEQQPERVIIFASSKIKVKEVTKALKRLKLNVGEMHSDLDQSQREAIMHEFRNGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G ++  + +  Q + 
Sbjct: 297 MLVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGCAITFVSETEQNKF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           +++       +   P P 
Sbjct: 357 KQIENFLEKEIYKIPVPE 374


>gi|163868127|ref|YP_001609331.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
 gi|161017778|emb|CAK01336.1| ATP-dependent RNA helicase [Bartonella tribocorum CIP 105476]
          Length = 467

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++   + +  A+   GY   T +Q   +   L+ KDVL  AQTG+GKT +F L +
Sbjct: 5   LNSFDDLGLSEKVINAVKSAGYTVPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRE+A QV    +       + VA+ IGGVS   + 
Sbjct: 65  LTLLEKGRAR---ARMPRTLILEPTREIAAQVEENFDKYGINHRLNVALLIGGVSFEHQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPDIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V V +   +   + +  R V       D   V  
Sbjct: 182 TRQTLFFSATMAPEITKLTKQFLHSPVSVEVTKASSTATTVTQRLVKSGNKSWDKRAVLR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +NAI+FC+ +  +S   + L +H F V AL G++ Q  R N L   ++ +
Sbjct: 242 ELIQNEGSKLQNAIIFCNRKRDISELFRSLIKHNFNVGALHGDMDQYSRMNTLADFKNNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+
Sbjct: 302 LTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRLGKAFTIVTKADQK 361

Query: 355 RAERLFREANVSVVW 369
               +   ++  + W
Sbjct: 362 YINAIEEMSHEKIEW 376


>gi|39104531|dbj|BAC98030.2| mKIAA0801 protein [Mus musculus]
          Length = 1044

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/556 (18%), Positives = 220/556 (39%), Gaps = 24/556 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 400 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 458

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 459 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 518

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +         +   +      +  +    D+  + +  P ++ ++  +    
Sbjct: 519 TPGRMIDMLAANSGKS-RVFYYLFSLLFVLDMIFVEADLRIVDNVRPDRQTVMFSATFPR 577

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                  +   K                     V+         +  +  Y  + + I+F
Sbjct: 578 AMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIF 637

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAARG+D+
Sbjct: 638 VDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDV 697

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S    
Sbjct: 698 KHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAV 757

Query: 371 PAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           P P +E +    +D Q+     I +   F       ++    +   +   +K A G    
Sbjct: 758 P-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDS 816

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLSVGSK 476
                    +    S+ + + R +D +        +                  ++    
Sbjct: 817 DDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKN 876

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQL 533
              E++  +     ++ +   +I    + P ++   ++    + +   +    L+K  + 
Sbjct: 877 LGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEE 932

Query: 534 KYLGGEKPDFRGYKSS 549
           +  GG+   F+ Y+  
Sbjct: 933 RQEGGQSESFKRYEEE 948


>gi|330987668|gb|EGH85771.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 442

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|320330567|gb|EFW86546.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873565|gb|EGH07714.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 442

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVEVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVQQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|298488858|ref|ZP_07006883.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156611|gb|EFH97706.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 442

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|257482171|ref|ZP_05636212.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 442

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|71734815|ref|YP_276470.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555368|gb|AAZ34579.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 450

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 18  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 77

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 78  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 136

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 137 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 196

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 197 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 256

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 257 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 316

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 317 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 376

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 377 RKEEQDFE 384


>gi|34541680|ref|NP_906159.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis W83]
 gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
           gingivalis W83]
          Length = 427

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 185/371 (49%), Gaps = 8/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L    ++  T VQ A + P L  +DV+  AQTG+GKT A+ L +   L   
Sbjct: 7   NLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDRL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQ 122
           +     +    A+ +APTRELA Q+ +++E       V      GG       ++RR + 
Sbjct: 64  SAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGMA 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  H+     ++SH+   VLDEAD MLD+GF DDI  I    P   + 
Sbjct: 124 MGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I  LA +  +D + V   + +R    I   A +   + +   +  +    
Sbjct: 184 VMFSATMPPKIRKLAASILRDPIEV-EIAISRPPESIMQSAYICHEAQKLPILRKLFEQS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F S +  V   T  L +  F V  +  +L Q +R   ++  ++G   V +ATD
Sbjct: 243 APKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFR 361
           + ARGID+ ++ +VI+ ++  +PE+ +HR GRT R    +G+++  + +  Q    ++  
Sbjct: 303 IVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKIET 362

Query: 362 EANVSVVWEPA 372
               SV   P 
Sbjct: 363 FLGKSVYKLPV 373


>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 477

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L +   LL++ 
Sbjct: 8   LNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE-LLSKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R        AL + PTRELA QV   +        +  AV  GGVS+  +   L+NG  
Sbjct: 67  ERAQRGQ-VRALVLTPTRELAAQVQESVATYGVNLPLKSAVVFGGVSIVPQLAALRNGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  + K ++ S L+ +VLDEAD MLD+GF  DI+ +L   P KR+ LMFS
Sbjct: 126 ILVATPGRLLDLCQQKAISFSKLEILVLDEADRMLDMGFIRDIKKVLALLPAKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N   + +      V  + +  A++ +++ +  K 
Sbjct: 186 ATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPVDKTRKSMALIELIKTNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L     +  A+ G  SQ  R+ AL   + G  +V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + PE+ +HR GRTGRAG  G +V ++     +    + R  N  
Sbjct: 306 GIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIERLINRV 365

Query: 367 VVWEPAPSVEA 377
           +  +     EA
Sbjct: 366 IERKQLAGFEA 376


>gi|168042093|ref|XP_001773524.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675226|gb|EDQ61724.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 619

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 148/527 (28%), Positives = 240/527 (45%), Gaps = 36/527 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I EAL++RG  +L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 11  VSEDIVEALAKRGITHLFPIQRAVLEPAMKGQDLIARAKTGTGKTLAFGIPIIRHIVDGN 70

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +P     P AL +APTRELA QV RE          V     GGV +  ++R L+ G
Sbjct: 71  AENAPRQGRSPRALVLAPTRELAKQVEREFMESAPMLSTVC--VYGGVPISMQQRQLERG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I VGTPGR+ D I    L +  +  +VLDEAD+ML +GF +D+E IL   PK+R+ ++
Sbjct: 129 VDIAVGTPGRIIDLIDRGSLKLKDVHFLVLDEADQMLAVGFEEDVERILQQLPKQRQSML 188

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ Y    + ++    + E       +    L A + R      I  +
Sbjct: 189 FSATMPKWVKELSRKYLNKPLTIDLVGDSDEKLADGIKNLAIQLPASAKRSILSDLITVH 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+         +   +    AL G++SQ +R   L   RDG+  V +AT
Sbjct: 249 GKGGKTIVFTQTKRDADDVAMAMGNLVSC-GALHGDISQVQREKTLSAFRDGKIAVLVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++LVIH E+ ++ E  +HR+GRTGRAGR G ++ +      R    +  
Sbjct: 308 DVAARGLDVPNVDLVIHYEIPNDSETFVHRTGRTGRAGRSGTNILMFTSQQVRTMRTIEN 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAAGF 420
                      P V  +     +++      +D S+  + +   + LL +  P+  AA  
Sbjct: 368 NVKCKFQIVGLPHVRDVMRASFEQVKGALENVDASLAAEFRPTAESLLEEKGPDVFAAAL 427

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                A L    ++ P   +   +      R  + G                        
Sbjct: 428 -----AHLSGFSQLPPSRSLLTYEPGMTTVRLVRTGARPP------------------LS 464

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTF----VEVSADGVDLLRR 523
           AR +  +L   S      +G I +  +        +V  D    L  
Sbjct: 465 ARAVSAVLSGMSRPAADRVGKICIIDEQKMNGAVFDVPDDMARELLA 511


>gi|149235261|ref|XP_001523509.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152060561|sp|A5E6W6|RRP3_LODEL RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|146452918|gb|EDK47174.1| ATP-dependent rRNA helicase RRP3 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 504

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 183/377 (48%), Gaps = 10/377 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+ +P+ + E++    Y   T +Q A +   L+ KD++  A+TGSGKT AF + +  
Sbjct: 100 FTEFDLVPE-LLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQ 158

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL      ++ A    AL +APTRELA Q+    + L +  G+     IGG+S+  + RD
Sbjct: 159 TL------YTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARD 212

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+++ TPGRL DH    KG ++  L+ +V+DE D M+DL +   I+ IL   P  
Sbjct: 213 LMRKPHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEVDRMIDLDYAKAIDQILKQIPSH 272

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+               K      V+V I    +    +     L + + +D  ++ I+
Sbjct: 273 QRITYLYTATMSREIEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCLTSPNTKDTRLIQIV 332

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K  I+F  T     R   +L    F+ V L G++ Q  R  A+   +     + +
Sbjct: 333 NLDSMKRVIIFTRTVVHTRRCCLMLLNLGFKCVELHGQMPQSRRLGAINKFKA-GTPILV 391

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P ++LVI+ ++  +P   +HR GRT RAG+ G ++ ++ Q       R+
Sbjct: 392 ATDVAARGLDIPAVDLVINYDIP-DPTLYIHRVGRTARAGKAGKAISLVTQYDLESYLRI 450

Query: 360 FREANVSVVWEPAPSVE 376
                  +  E  P  E
Sbjct: 451 ENTLGTKLPKEDLPLDE 467


>gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
          Length = 457

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/361 (34%), Positives = 198/361 (54%), Gaps = 3/361 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   + +A+ ++GY   + +Q+  +   L  KD+L +AQTG+GKT  F L L 
Sbjct: 1   MSFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL  + R + ++   AL + PTRELA QV   ++       +  AV  GGV ++ + +
Sbjct: 61  HRLL--DGRPAASNCVRALILTPTRELAAQVEENVKSFSEFLPLKTAVVFGGVGINPQMK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  +++ TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ IL   P K
Sbjct: 119 ALRSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRMLDMGFIHDIKRILKLLPTK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  ITTLA+    +  +V+ A  N     +    V +  S +  A+++++
Sbjct: 179 RQTLLFSATFSSEITTLAQTITNNPEKVSTAPANTTVETVQQHLVPIDKSKKTAALISLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +G K  +VF  T+   +R    L+       A+ G  SQ  R+ AL   + G   V +
Sbjct: 239 KQNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEIDVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L +VI+ +L + P + +HR GRTGRAG  G +   +  +   + + +
Sbjct: 299 ATDIAARGIDINELPIVINIDLPNTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDI 358

Query: 360 F 360
            
Sbjct: 359 E 359


>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 496

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 190/374 (50%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERLSNGP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +   AL + PTRELA QV   +E       +   V  GGV V+ + + L+ G  
Sbjct: 68  KR--KFNQVRALVLTPTRELAAQVHESVEKYSKNLPLTSDVVFGGVKVNPQMQRLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L+FS
Sbjct: 126 VLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILAKLPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK   KD V +++A  N     ++    ++    +   +  +++ +  K 
Sbjct: 186 ATFSDEIRQLAKGLVKDPVEISVAKRNTTAETVEQSVYVMDKGRKPKVLTKLIKDNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGVSAAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++  +    + R     
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEAKELFAIERLIQKV 365

Query: 367 VVWEPAPSVEAIRE 380
           +        E + +
Sbjct: 366 LPRHVLEGFEPVNK 379


>gi|315122206|ref|YP_004062695.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495608|gb|ADR52207.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 459

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 192/366 (52%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GYV+ T +Q   +   L+  DV   AQTG+GKT +F L + + L    
Sbjct: 8   LSPKVVCAVADAGYVDPTPIQVKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + +A+ IGG+    + + L+ GA 
Sbjct: 68  AR---ARMPRTLILEPTRELASQVADNFQKYGKNYNLNIALLIGGIPFETQNKKLERGAD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGR+ DH     L +++++ +V+DEAD MLD+GF  DI+ I    P  R+ L+FS
Sbjct: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPDIQSITSLIPFTRQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---LRYHG 243
           AT++  +  +++ + ++  R+ + +       I++  V           +          
Sbjct: 185 ATMTEELQKVSEKFLQNPKRIEVNTPYSTAETIEHCFVATYPQYSKKFGLVQKLIREQDA 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+     L +  F V A+ G + Q+ R   L   ++G  ++ +A+D+
Sbjct: 245 IKNAIIFCNQKKDVASLCCALEKQGFSVCAIHGNMDQRSRIKILDSFKEGTIQLMVASDL 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++ + PEN +HR GRTGRAGR G +  ++     +  + + +  
Sbjct: 305 AARGLDIPDVGHVFNFDVPNRPENYIHRIGRTGRAGRSGKAFTLVTSEDVKYIDAIEKLI 364

Query: 364 NVSVVW 369
              + W
Sbjct: 365 EKKISW 370


>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase domain-containing protein [Caulobacter
           segnis ATCC 21756]
 gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
           21756]
          Length = 524

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++       +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L L
Sbjct: 1   MTEFSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       + A  P AL IAPTRELA QV    E     T +  A+ IGGVS   + 
Sbjct: 61  IDKL---QSGRAKARMPRALVIAPTRELADQVASSFEKYAKGTKLSWALLIGGVSFGDQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAI 235
           K++ L FSAT+ P IT L K + +D VR+ +A     +++I     +        +  A+
Sbjct: 178 KKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++     +  IVFC+ +  V    K L  H +    + G+L Q +R   L   R G  
Sbjct: 238 RALIEKAQIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGAL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G++  ++     + 
Sbjct: 298 KILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKG 357

Query: 356 AERLFREANVSVVWEPA 372
            +++ +    +   E  
Sbjct: 358 FDKVVKLIGSTPDEEKL 374


>gi|209527740|ref|ZP_03276235.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
 gi|209491818|gb|EDZ92178.1| DEAD/DEAH box helicase domain protein [Arthrospira maxima CS-328]
          Length = 465

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 118/419 (28%), Positives = 193/419 (46%), Gaps = 14/419 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE++   +     L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 3   QSFESLGISEQRARHLETLGFTEPTPVQVQAIPEMLSGRDVVGMAQTGTGKTAAFSLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         A+   AL + PTRELA+QV   +        + V    GG S+ R+ +
Sbjct: 63  EQIDVH------AAGIQALVLTPTRELAMQVKEAIRNFSDDNALYVLTVYGGQSIDRQIQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            L+ G  +VVGTPGR+ D +    L +  L+ +VLDEADEML +GF  D+E I     S 
Sbjct: 117 RLRRGVQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSE 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++     +         + ++ +          +           ++     +  A+  
Sbjct: 177 HRQTAFFSATMDPSISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEP 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     ++AI+F  T+ S +  T  L      V    G L+Q +R   L  +R  + R 
Sbjct: 237 ILELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRW 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  L  VI+ +L    E+ +HR GRTGRAGR+G ++ +I    +R+  
Sbjct: 297 IVATDIAARGLDVDHLTHVINYDLPDQVESYVHRIGRTGRAGREGKAITLIQSIDRRKLR 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            + R    ++  +  P    I  R   R+   ++D L  + +      +V  L  ++DP
Sbjct: 357 NIERHLRQTLSIQSVPKRAEIEARYIDRLKDRVRDALAGERM-ASFLPIVSQLSEEYDP 414


>gi|323305660|gb|EGA59400.1| Dhh1p [Saccharomyces cerevisiae FostersB]
          Length = 506

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 169/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +   
Sbjct: 46  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 106 EKVKPKLNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     ++DEAD+ML   F+  IE IL   P  
Sbjct: 160 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 219

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +Q     +N+  E             V    + + +  + 
Sbjct: 220 HQSLLFSATFPLTVKEFMVKHQHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 279 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 398

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 399 EQELGTEIAAIPA 411


>gi|115486155|ref|NP_001068221.1| Os11g0599500 [Oryza sativa Japonica Group]
 gi|122206897|sp|Q2R1M8|RH52C_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52C
 gi|77551918|gb|ABA94715.1| DEAD-box protein 3, X-chromosomal, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113645443|dbj|BAF28584.1| Os11g0599500 [Oryza sativa Japonica Group]
          Length = 623

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 20/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++  
Sbjct: 161 DLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRG 220

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                P         PLAL ++PTREL++Q+  E      +TGV V V  GG  ++++ R
Sbjct: 221 PPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLR 280

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   +  I++     
Sbjct: 281 DLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMP 340

Query: 180 RR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                  ++FSAT    I  +A ++ ++ + + +         I  R   V  +D+ + +
Sbjct: 341 PPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHL 400

Query: 236 VNILRYHG-------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +++L               +VF  T+         L  + F   ++ G+ +QQER  AL+
Sbjct: 401 MDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALR 460

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++    
Sbjct: 461 SFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 520

Query: 349 PQN---MQRRAERLFREANVSVV 368
            +N   M R    L +E+N  V 
Sbjct: 521 NENNSSMARSLAELMQESNQEVP 543


>gi|6324217|ref|NP_014287.1| Dbp2p [Saccharomyces cerevisiae S288c]
 gi|118284|sp|P24783|DBP2_YEAST RecName: Full=ATP-dependent RNA helicase DBP2; AltName: Full=DEAD
           box protein 2; AltName: Full=p68-like protein
 gi|5272|emb|CAA36874.1| p68 protein [Saccharomyces cerevisiae]
 gi|1302034|emb|CAA95991.1| DBP2 [Saccharomyces cerevisiae]
 gi|285814541|tpg|DAA10435.1| TPA: Dbp2p [Saccharomyces cerevisiae S288c]
          Length = 546

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 188/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ 
Sbjct: 172 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G+ IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA +Y  D ++V + S     +   + I          DR N 
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  + 
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKG 470

Query: 354 --RRAERLFREANVSVVWE 370
              +   + REAN ++  E
Sbjct: 471 LGAKLISIMREANQNIPPE 489


>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
          Length = 501

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 78  ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 138 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 251

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 252 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 311

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 312 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 371

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 432 LILRIEEVLGKKLPKE 447


>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 543

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 120 ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 179

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 180 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 233

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 234 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 293

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 294 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 354 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 414 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 473

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 474 LILRIEEVLGKKLPKE 489


>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
          Length = 543

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 120 ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 179

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 180 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 233

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 234 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 293

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 294 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 354 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 414 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 473

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 474 LILRIEEVLGKKLPKE 489


>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
          Length = 501

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 78  ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 138 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 251

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 252 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 311

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 312 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 371

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 432 LILRIEEVLGKKLPKE 447


>gi|255578793|ref|XP_002530253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223530219|gb|EEF32123.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 1173

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 206/456 (45%), Gaps = 22/456 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E + +  Y     +Q   L   +  +D +  A+TGSGKT+AF L +   +  + 
Sbjct: 534 LASKILETIKKLNYEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQ 592

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL  Q+  +++      G+      GG  V ++  +L+ G  
Sbjct: 593 PLVEAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGIRCVPVYGGSGVAQQISELKRGTE 652

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +    R+ +
Sbjct: 653 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 712

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  LA+      V + +   +  + DI     +   S+R   ++ +L    
Sbjct: 713 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESERFLRLLELLGEWN 772

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K  I +F  ++       + L +H +  ++L G   Q +R + +   +     + IAT 
Sbjct: 773 EKGKILIFVQSQDKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 832

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L+LV++ ++ ++ E+ +HR GRTGRAGRKG ++  I +   R A  L + 
Sbjct: 833 IAARGLDVKELDLVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKA 892

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-------VLLAKHDPEK 415
             +S         E +   D  + L D   +   QG E+               + D ++
Sbjct: 893 LELS---------EQVVPEDL-KALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKR 942

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
           IAA   +    G    +  +       R    D SR
Sbjct: 943 IAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISR 978


>gi|160358662|sp|A6ZSX1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
           [Saccharomyces cerevisiae RM11-1a]
 gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
 gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
          Length = 501

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 78  ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 138 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 251

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 252 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 311

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 312 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 371

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 432 LILRIEEVLGKKLPKE 447


>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 367 LQRREEPDFE 376


>gi|84996983|ref|XP_953213.1| DEAD-box family RNA-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304209|emb|CAI76588.1| DEAD-box family RNA-dependent helicase, putative [Theileria
           annulata]
          Length = 616

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 176/378 (46%), Gaps = 12/378 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTG---SGKTVAFGLAL 58
           FE  + P+ I  ++   G+   T +Q       L  +D++  A+TG   SGKT+AF L  
Sbjct: 190 FEYTSFPRYILSSIESAGFKEPTPIQVQAWPIALSGRDMIGIAETGITRSGKTLAFLLPA 249

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELA Q+          + +  +V  GGV    + 
Sbjct: 250 IVHINAQAL-LRPGDGPIVLVLAPTRELAEQIKETALVFGRSSKLKTSVAYGGVPKKFQT 308

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++  PGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 309 IALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRP 368

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA---SENRQHSDIDYRAVLVALSDRDNAI 235
            R+ LMFSAT    + +L+++     V             H+      +L     R    
Sbjct: 369 DRQTLMFSATWPKEVISLSRSLLSHEVVHVNIGSLDLTTCHNIEQNVFILEEREKRLKLK 428

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             + +       ++F  T+      T+ L    +  + + G+  Q+ER+  L   + G+ 
Sbjct: 429 ELLKKLMDGGKILIFSETKKGADTLTRELRLDGWPALCIHGDKKQEERTWVLNEFKTGKH 488

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---M 352
            + IATDVA+RG+D+ D++ VI+ +     E+ +HR GRTGRAG KG S   +  +    
Sbjct: 489 PIMIATDVASRGLDVRDVKYVINYDFPGQIEDYVHRIGRTGRAGMKGSSYTFLTPDKFKS 548

Query: 353 QRRAERLFREANVSVVWE 370
            R   +L REAN  +  E
Sbjct: 549 ARELVKLMREANQEIPPE 566


>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
 gi|217986775|gb|EEC53108.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
          Length = 428

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + EAL    +   T +QE  +   L  +D++  AQTG+GKT A+ L + 
Sbjct: 1   MKFSELKLNDNVLEALDAMRFDECTPIQEQSIPVILEGRDLIAVAQTGTGKTAAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + L   ++   P  +   + +APTRELA Q+ +++E       V      GG       +
Sbjct: 61  NKL---SEGGHPEDSINCIVMAPTRELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H+    +++S +   +LDEAD MLD+GF DDI  I+   
Sbjct: 118 QKRGLTLGADVVIATPGRLIAHLSLGYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LAK+   +   V   + ++    I   A +   + +   I 
Sbjct: 178 PKERQTIMFSATMPAKIQQLAKSILNNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIR 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++      +  I+F S++  V   TK L +    V  +  +L Q +R   +   + GR  
Sbjct: 237 SLFAEQTPERVIIFASSKLKVKEVTKALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRIN 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RA   G+++  + +  Q   
Sbjct: 297 ILVATDIVARGIDIDDIRLVINYDVPHDSEDYVHRIGRTARANNDGVALTFVNEKEQTNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
           + +       +   P P 
Sbjct: 357 KGIENFLEKEIYKIPVPE 374


>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 513

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 193/374 (51%), Gaps = 8/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++       +A++E GY   T +Q   +   L+ +DVL  AQTG+GKT AF L +
Sbjct: 1   MTEFSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A   +   A  P AL IAPTRELA QV    E       +  A+ IGGVS   + 
Sbjct: 61  IDRLAAGRAK---ARMPRALVIAPTRELADQVSASFEKYAMGQKLTWALLIGGVSFKDQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  D+E I   +P 
Sbjct: 118 QKLDRGVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRMLDMGFIPDLERIFKLTPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAI 235
           K++ L FSAT+ P IT L K +  D VR+  +        I    V +       +  A+
Sbjct: 178 KKQTLFFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLVRIPSADPKAKRTAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++      N IVFC+ +  V    K L +H F   A+ G+L Q  R   L+  R+G  
Sbjct: 238 RELIGRAEINNGIVFCNRKTEVDIVAKSLKKHGFDAAAIHGDLDQATRMRTLESFRNGEL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++  A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G +  ++     + 
Sbjct: 298 KLLCASDVAARGLDIPAVSHVFNFDVPHHADDYVHRIGRTGRAGRTGEAFMIVTPADSKN 357

Query: 356 AERLFREANVSVVW 369
            +++ +    +   
Sbjct: 358 LDKVLKLIGKTPEE 371


>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
 gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
          Length = 425

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 6/371 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+ + + ++L++  Y   + +QE  +   L   D++  AQTG+GKT  F L + 
Sbjct: 1   MTFNEFNLRKPLLDSLAKASYKKPSPIQEKGIPILLEGSDLIACAQTGTGKTATFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           ++L  E +      +  AL + PTRELA Q+   ++       +      GG     + +
Sbjct: 61  NSLSKEKNH-----SIRALILTPTRELATQIFENIKMFGRYMHLRACCVYGGSPAAPQLK 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +++G  I++ TPGRL D++    +++ H++ +VLDEAD MLD+GF  D+  I+   P  
Sbjct: 116 AIRSGCDILIATPGRLLDYLAHGKISLRHIEFLVLDEADRMLDMGFIADVRKIVQQIPND 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT+   I  LA++  K+   V I +E    S ID   +    S +   +VN+L
Sbjct: 176 RITALFSATMPKEIQELARDILKNPKEVRIEAEKFTASTIDQYLIYTEKSSKKKVLVNLL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K  IVF  T+    R  K L E     + + G+ +Q +R NALQ  R  + R+ I
Sbjct: 236 NTESIKKTIVFTRTKIGADRLEKYLKEKEIACLVIHGDKTQGQRLNALQRFRTNQIRILI 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ +L  + EN +HR GRTGRA ++G+S+ ++ +        +
Sbjct: 296 ATDVAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLANI 355

Query: 360 FREANVSVVWE 370
                  +  +
Sbjct: 356 ESYIQFQIPLK 366


>gi|209545432|ref|YP_002277661.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533109|gb|ACI53046.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 555

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 194/379 (51%), Gaps = 5/379 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     I  A+ + GY + T +Q   +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 50  LFSDLGLSDPIQRAIDDMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLE 109

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P +L + PTRELA+QV            +  A+ IGG S+  ++  
Sbjct: 110 ILSGSRAR---ARMPRSLILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDV 166

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D     GL ++  + +V+DEAD MLD+GF  DIE I+      R
Sbjct: 167 LNRGVDVLIATPGRLIDLFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVR 226

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  LA  + ++   + ++  +   + I+   V+V  +D+   +  +LR
Sbjct: 227 QTLFFSATMAPEIRRLADMFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLR 286

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NAIVFC+ +  V    K L +H F   AL G+L Q  R   L+  + G  ++ + 
Sbjct: 287 DDAVQNAIVFCNRKRDVDVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVC 346

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + +L  + E+ +HR GRTGRAGR G +  +     +  AE + 
Sbjct: 347 SDVAARGIDIGGLSHVFNFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIE 406

Query: 361 REANVSVVWEPAPSVEAIR 379
                ++       V  + 
Sbjct: 407 TLIGHAIPRLEVEGVTQLE 425


>gi|296192757|ref|XP_002744211.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Callithrix jacchus]
          Length = 1032

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQDGGQNESFKRYEEE 936


>gi|262231852|ref|NP_001160005.1| probable ATP-dependent RNA helicase DDX4 isoform 3 [Homo sapiens]
          Length = 704

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 269 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 328

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 329 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 388

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 389 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 448

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 449 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 508

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 509 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 568

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 569 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 628

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 629 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 676

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 677 TRKGKSTLNTAGFSSSQAPNPVDDES 702


>gi|262118318|ref|NP_001160006.1| probable ATP-dependent RNA helicase DDX4 isoform 4 [Homo sapiens]
          Length = 575

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 140 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 199

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 200 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 259

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 260 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 319

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 320 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 379

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 380 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 439

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 440 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 499

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 500 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 547

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 548 TRKGKSTLNTAGFSSSQAPNPVDDES 573


>gi|216548263|ref|NP_001136021.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Homo sapiens]
          Length = 690

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 255 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 314

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 315 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 374

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 375 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 434

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 435 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 494

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 495 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 554

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 555 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 614

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 615 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 662

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 663 TRKGKSTLNTAGFSSSQAPNPVDDES 688


>gi|193787510|dbj|BAG52716.1| unnamed protein product [Homo sapiens]
          Length = 575

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 140 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 199

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 200 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 259

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 260 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 319

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 320 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 379

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 380 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 439

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 440 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 499

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 500 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 547

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 548 TRKGKSTLNTAGFSSSQAPNPVDDES 573


>gi|6808044|emb|CAB70750.1| hypothetical protein [Homo sapiens]
          Length = 635

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 200 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 259

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 260 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 319

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 320 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 379

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 380 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 439

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 440 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 499

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 500 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 559

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 560 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 607

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 608 TRKGKSTLNTAGFSSSQAPNPVDDES 633


>gi|13518015|ref|NP_077726.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Homo sapiens]
 gi|20138033|sp|Q9NQI0|DDX4_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|8102021|gb|AAF72705.1| VASA protein [Homo sapiens]
 gi|56789238|gb|AAH88362.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|119575324|gb|EAW54929.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Homo sapiens]
 gi|158258266|dbj|BAF85106.1| unnamed protein product [Homo sapiens]
          Length = 724

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 528

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 529 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 588

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 649 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 696

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 697 TRKGKSTLNTAGFSSSQAPNPVDDES 722


>gi|23336902|tpg|DAA00076.1| TPA_exp: Prp5-like DEAD-box protein [Homo sapiens]
          Length = 1032

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQDGGQNESFKRYEEE 936


>gi|320589963|gb|EFX02419.1| RNA helicase [Grosmannia clavigera kw1407]
          Length = 537

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 116 VETFDEAGFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPS 175

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 176 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGPQI 234

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL     
Sbjct: 235 RDLSRGVEVCIATPGRLIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRP 294

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  D ++VNI S +   +  I     +V+  D+ + ++ 
Sbjct: 295 DRQTLMWSATWPKEVRNLAADFLTDFIQVNIGSLDLSANHRITQIVEVVSEGDKRDRMLK 354

Query: 238 ILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L             ++F  T+      T++L +  +  +++ G+  Q ER   L   + 
Sbjct: 355 HLEKVMDDKEKENKVLIFTGTKRVADDITRLLRQDGWPALSIHGDKQQNERDWVLDQFKT 414

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVA+RGID+ ++  VI+ +  +N E+ +HR GRTGRAG  G ++ +   + 
Sbjct: 415 GKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGANGTAITLFTTDN 474

Query: 353 QRRAERL---FREANVSV 367
            ++A  L    +EA   +
Sbjct: 475 AKQARDLVSVLQEAKQQI 492


>gi|294789414|ref|ZP_06754651.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
 gi|294482627|gb|EFG30317.1| 3-hydroxyisobutyrate dehydrogenase family protein [Simonsiella
           muelleri ATCC 29453]
          Length = 471

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 134/380 (35%), Positives = 204/380 (53%), Gaps = 4/380 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   Q I  AL+E+GY   T +Q   +   L   D+L +AQTG+GKT AF L  
Sbjct: 23  MSQFSQLGLGQEITSALAEQGYETPTPIQATAIPKALAGHDLLAAAQTGTGKTAAFMLPS 82

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L    N   SPA  P+  L + PTRELA Q+ +  +       +   V  GGV++ +
Sbjct: 83  LERLKRYANASTSPAMHPVRMLVLTPTRELADQIDQNTQNYIKNLPLRHTVLFGGVNMDK 142

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DHI+ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 143 QTTDLRTGCEIVVATVGRLLDHIKQKNINLNKVEIVVLDEADRMLDMGFIDDIRQIMQML 202

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT +PAI  LA+++      V +A++N  +++++   + V    +   + 
Sbjct: 203 PRPRQTLLFSATFAPAIRKLAQDFMNSPETVEVAAQNATNANVEQHVIAVDAYRKRELLE 262

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ S  +  + L        A+ G+ SQQ R + L   + G  R
Sbjct: 263 RLIVDLQMPQVIVFCKTKQSADQVARDLVRRGLSANAIHGDKSQQTRLDVLSQFKSGELR 322

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL +  E+ +HR GRTGRAG  G+++ ++  N Q+  
Sbjct: 323 VLVATDVAARGLDIAELPFVINYELPTQAEDYVHRIGRTGRAGADGVAISMMDDNEQKMY 382

Query: 357 ERLFREANVSVVWEPAPSVE 376
             +       +        E
Sbjct: 383 FSINELIGQELPISKIEGFE 402


>gi|26991217|ref|NP_746642.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986267|gb|AAN70106.1|AE016650_5 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 440

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P     AL + PTRELA Q  ++++     T +   +  GG     +   L+    
Sbjct: 64  DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 124 VLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++     +L     
Sbjct: 184 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETF 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 244 DKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 304 ARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 363

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 364 QQFERRVIKEVK 375


>gi|148546618|ref|YP_001266720.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148510676|gb|ABQ77536.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 453

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 20  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV--- 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P     AL + PTRELA Q  ++++     T +   +  GG     +   L+    
Sbjct: 77  DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 137 VLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++     +L     
Sbjct: 197 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 257 DKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 317 ARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 377 QQFERRVIKEVK 388


>gi|71022263|ref|XP_761361.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
 gi|74699927|sp|Q4P3U9|RRP3_USTMA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|46097669|gb|EAK82902.1| hypothetical protein UM05214.1 [Ustilago maydis 521]
          Length = 551

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 202/372 (54%), Gaps = 11/372 (2%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++   PQ I EA +  G+ + T +Q   +   L+ +DV+  AQTGSGKT AF + +  
Sbjct: 106 FSDLGVIPQ-IVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAFTIPILQ 164

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L      F       A  +APTRELA Q+ +++E L +  GV  A  +GG+ +  +   
Sbjct: 165 ALWDNPKPF------FACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQSIA 218

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H++V TPGRL DH+      ++  L+ +V+DEAD +LD+ F   I+ +L S P++
Sbjct: 219 LSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEADRLLDMDFGPIIDKLLQSIPRE 278

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR ++FSAT++  +  L +   K+ VRV + ++    S +    + +  + +D  +V++ 
Sbjct: 279 RRTMLFSATMTTKVAKLQRASLKNPVRVEVDTKYTTVSTLKQHYMFMPFAHKDTYLVHLA 338

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + IVF  T     R + +L    F  + L G+LSQQ R  AL   + G   + +
Sbjct: 339 NEQAGHSIIVFTRTVHDSQRLSILLRLLGFPAIPLHGQLSQQARLGALNKFKTGGRSILV 398

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P ++LV++ ++ +N ++ +HR GRT RAGR G SV ++ Q      +R+
Sbjct: 399 ATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGRSGRSVTLVTQYDVELLQRI 458

Query: 360 FREANVSVVWEP 371
                + +   P
Sbjct: 459 EAVIGLKMTEFP 470


>gi|331011364|gb|EGH91420.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 442

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIGVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|299133793|ref|ZP_07026987.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
 gi|298591629|gb|EFI51830.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
          Length = 472

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/422 (31%), Positives = 206/422 (48%), Gaps = 14/422 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLDRRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS   +   
Sbjct: 62  LLEKGRAR---ARMPRTLILEPTRELAAQVKENFDRYGVGQKLNVALLIGGVSFGDQDAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LGRGVDVLIATPGRLLDHTERGKLLMTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L F+AT+   I  + + +  + V+V ++        +    +       +   +    
Sbjct: 179 QTLFFTATMPAEIRRITETFLHNPVKVEVSKPASTAVTVTQFQISTGKESHEKRELLRQL 238

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              AK   NAI+FC+ +  V+   K L +H F   AL G++ Q  R  AL+  R G   +
Sbjct: 239 LRDAKDLKNAIIFCNRKREVAILHKSLQKHGFGAAALHGDMDQSARMAALEQFRKGELPL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++    Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRLGTAISIVSPLDQKSIL 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-DPEKI 416
            + +    S+     P  E      A  +  D +  ++     K       +KH D EK 
Sbjct: 359 AIEKLIGQSI-----PHAEGHARTAAASVEADAVIAENGPAPRKSRRGGQRSKHRDREKT 413

Query: 417 AA 418
           +A
Sbjct: 414 SA 415


>gi|289740539|gb|ADD19017.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 460

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 62  FEEFCLKRKLLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 122 IDPTKDWI------QALIMVPTRELALQTSQICIELAKHLDIRVMVTTGGTVLKDDILRL 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH K +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 176 YQKVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 236 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 295 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQGHRNRVFHDFRQGLCRNLVCS 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 355 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 414

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 415 ELGTEI--KPIPKV 426


>gi|255261539|ref|ZP_05340881.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
 gi|255103874|gb|EET46548.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
          Length = 446

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 193/360 (53%), Gaps = 1/360 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + + L+++G  + T +Q   +   +  +DV+  AQTG+GKT AFGL +   L+    +
Sbjct: 10  PRLVKKLADQGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMIDALMRAGVK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
             P +    L +APTRELA Q+   L      + + VA+ +GG  +  + + L+ G  ++
Sbjct: 70  PEPKT-VRGLILAPTRELAKQISDNLRDYTQGSHLKVALVVGGAGIVAQMKRLERGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D +  K L++S    +VLDEAD+MLDLGF   +  I       R+ ++FSAT
Sbjct: 129 VATPGRLIDLLDRKALSLSETHYLVLDEADQMLDLGFIHALRKIAPLLADDRQTMLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   +  LA  Y +  VRV +    +    I+     +A S++   ++ +L  H  + AI
Sbjct: 189 MPKQMNELAAAYLRSPVRVEVNPPGKAADKIEQSLHYIAKSEKPKLLIELLGKHKGERAI 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  K L +  F  V++ G  SQ +R  A+   R+G+  V +ATDVAARG+
Sbjct: 249 VFGRTKHGCEKLYKTLEKAGFDAVSIHGNKSQGQRERAIVAFREGKVTVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+PD++ V + +L + PEN +HR GRT RAG +GM++     +       + +   + + 
Sbjct: 309 DIPDVKHVYNFDLPNVPENYVHRIGRTARAGAEGMAIAFCAPDEMSELRSIQKVMKMDIP 368


>gi|6468270|emb|CAB61567.1| ATP-dependent RNA helicase [Candida albicans]
          Length = 399

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA+Q+   +  L     +    CIGG +V  + + 
Sbjct: 87  VID------TKSKECQALILSPTRELAIQIQNVVMHLGDYMNIHTHACIGGKNVGEDVKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+   +  +   +  D V++ +  +    S I    V       + + + ++ 
Sbjct: 201 QVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+     + +  F VVA+ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG ++ +I ++     + L
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEL 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EKYYSTKIKEMPM 393


>gi|313225950|emb|CBY21093.1| unnamed protein product [Oikopleura dioica]
          Length = 485

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 5/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   ++  GYV  T++Q       L   D+   A+TGSGKT+AF L     ++A+ 
Sbjct: 62  IPDYLMGTVTAAGYVTPTTIQSQSWPIALSGADMQGIARTGSGKTLAFVLPSIIHIMAQP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P   P+A+ +APTRELA QV    E      GV      GG     +   L+ GAH
Sbjct: 122 D-LRPGDGPVAVILAPTRELAKQVQEVAEQFGKPCGVNTVAVYGGADKRAQIGALERGAH 180

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL D I+    N+     ++LDEAD MLD+GF   I  I+    + R+ LMFS
Sbjct: 181 IVVACPGRLLDLIQSGRTNLHRTTFLILDEADRMLDMGFEPQIRKIVGQIRQDRQTLMFS 240

Query: 187 ATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++ K   ++ I   E   + +I+    +V+  D+        +   + 
Sbjct: 241 ATWPKEIQKLASDFMKTPTQIFIGNQELTANPNIEQVVEVVSDFDKAMRFNYWFQQITSP 300

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         ++    +  A+ G+  Q+ER   L+  R+G+  V +ATDVAA
Sbjct: 301 KILVFTDTKRDCDNLAYTMSNGRVRCAAIHGDKDQRERERVLKDFRNGQISVLVATDVAA 360

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFRE 362
           RG+D+ D+  VI+ +  S  E+ +HR GRT R  +KG S+  I     + A    +L  +
Sbjct: 361 RGLDIDDIGTVINYDFPSQLEDYVHRIGRTARGEKKGKSISFITAKSAKHASALVKLLEQ 420

Query: 363 ANVSVVWE 370
           A   V  E
Sbjct: 421 AKQHVPPE 428


>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
           ISDg]
          Length = 514

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 194/382 (50%), Gaps = 6/382 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+ + + +A+ E G++  + +Q+  +   L  +D+L  AQTG+GKT AF L + 
Sbjct: 1   MNFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +L          S   AL I PTRELA+Q+    E     T +  +V  GGV    +  
Sbjct: 61  QSL-----SKGEGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVN 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++ TPGRL D I    + +  ++  VLDEAD+MLD+GF +DI+ ++   PK 
Sbjct: 116 SLKAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKT 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   I +LA N   +   + I+        I+     V   ++ + + +++
Sbjct: 176 RQTLLFSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLI 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + H     +VF  T+    R    L +   +  A+ G   Q  R  AL   ++G+ +V +
Sbjct: 236 KEHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ +L  V++ ++ +  E  +HR GRTGRAG  G ++ +   +       +
Sbjct: 296 ATDIAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREI 355

Query: 360 FREANVSVVWEPAPSVEAIRER 381
            +   + +   P+     I E+
Sbjct: 356 EKHIGMVIPEVPSKWPMLILEK 377


>gi|19114747|ref|NP_593835.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654514|sp|Q9P6N8|RRP3_SCHPO RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|7708606|emb|CAB90153.1| ATP-dependent RNA helicase Rrp3 (predicted) [Schizosaccharomyces
           pombe]
          Length = 465

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 201/423 (47%), Gaps = 15/423 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + EA  + G+   T +Q+  +   L ++DV+  AQTGSGKT AF L + 
Sbjct: 46  KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      F       A+ +APTRELA Q+  + E +    GV   V +GG+ +  +  
Sbjct: 106 QELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAV 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH+      ++ +LK +++DEAD +LD+ F   I+ IL   P 
Sbjct: 160 ALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPH 219

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR L+FSAT++  +  L +      VRV ++S+      +  R +      +D  +V +
Sbjct: 220 ERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYL 279

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + I+F  T     R   +L    F  + L G+LSQ  R  AL   + G     
Sbjct: 280 VNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTL 339

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       R
Sbjct: 340 VATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLR 399

Query: 359 LFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +       +              E + E   + I+Q     D  +   K          D
Sbjct: 400 IEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTKRKRDDLD 459

Query: 413 PEK 415
            E+
Sbjct: 460 REE 462


>gi|332978670|gb|EGK15368.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 519

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 198/372 (53%), Gaps = 6/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL+  GY + T +Q   + P L  +D+L+SAQTGSGKT AF L +   ++ +
Sbjct: 46  DLAPELLSALTSSGYEHPTPIQAQSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKIIRD 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               +       + + PTRELA QV   +    +KT  + +V  +GG     + R L  G
Sbjct: 106 K---ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNKG 162

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGR  DH+    +++S L  ++LDEAD MLD+GF DDIE ++ ++PK R+ +M
Sbjct: 163 VQIIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFADDIEKVMSAAPKSRQTIM 222

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT    +  +A ++  +  R++I +E +   +  Y A      +R    +   +    
Sbjct: 223 CSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDHLLTQKDVN- 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+ S     K L E   +   L G+L Q +R+  +  ++ G+  + +ATDVA
Sbjct: 282 -QAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRTRIINDVKAGKISILVATDVA 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  V + +L    E+ +HR GR+GRAGR G+++ +   + + + + + R   
Sbjct: 341 ARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRPQLDAINRYLK 400

Query: 365 VSVVWEPAPSVE 376
            ++  E    +E
Sbjct: 401 RTMSVEEIEGME 412


>gi|323499382|ref|ZP_08104358.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315567|gb|EGA68602.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 477

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 187/380 (49%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +QE  +   L+ KDV+ +AQTG+GKT  F L +   L  +N
Sbjct: 8   LSAPILKAIEEQGYDKPSPIQEQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERL--DN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV  + +   L+ G  
Sbjct: 66  GTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSQVIFGGVKANPQMMKLRKGCD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 VLVATPGRLLDLYQQNAIKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LAK    D V V+++ EN     I+          +   +V +++    K 
Sbjct: 186 ATFSPEIRELAKGLVNDPVEVSVSKENSTAVTIEQSIYPADKRKKAPMLVKMIKDGDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+   +R    L +       + G  SQ  R+ AL   + G  +V +ATD+AAR
Sbjct: 246 TLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDVKVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ EL +  E+ +HR GRTGRAG  G +  ++          + R     
Sbjct: 306 GIDIPQLPQVVNFELPNVSEDYVHRIGRTGRAGEVGKAYSLVEAAEASELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +        + + E    ++
Sbjct: 366 LPRLELEGFKPVNELPESKL 385


>gi|296387524|ref|ZP_06876999.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 449

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGGD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQTNRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 367 LQRREEPDFE 376


>gi|297295088|ref|XP_002804561.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 2
           [Macaca mulatta]
 gi|297295090|ref|XP_001109331.2| PREDICTED: probable ATP-dependent RNA helicase DDX46-like isoform 1
           [Macaca mulatta]
          Length = 1032

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQDGGQNESFKRYEEE 936


>gi|270004664|gb|EFA01112.1| hypothetical protein TcasGA2_TC010324 [Tribolium castaneum]
          Length = 574

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 179/377 (47%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   + + G+ + T +Q       L  +D++  A TGSGKT+++ L    
Sbjct: 132 TFEEAGFPDYVMSEIRKMGFKHPTPIQSQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 191

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+AL +APTRELA Q+ +        + +      GG     +  D
Sbjct: 192 HINHQ-PRLLRGDGPIALVLAPTRELAQQIQQVATDFGRSSKIRNTCVFGGAPKGPQAND 250

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 251 LMDGVEIVIATPGRLIDFLESNRTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 310

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  LA  + KD +++N      S N     I           + + ++
Sbjct: 311 QTLMWSATWPKEVQALAAEFLKDYIQINVGSLQLSANHNILQIIDVCQEYEKETKLSTLL 370

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+F  T+  V   T+ +    +  V + G+ SQQER   LQ  R G+A 
Sbjct: 371 KEIMAEKENKTIIFIETKKRVDEITRKMKRDGWPAVCIHGDKSQQERDWVLQDFRTGKAP 430

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A
Sbjct: 431 ILVATDVAARGLDVEDVKFVINFDYPSNSEDYVHRIGRTGRSQRTGTAYTFFTPANANKA 490

Query: 357 ERL---FREANVSVVWE 370
             L    +EA   +  +
Sbjct: 491 ADLVSVLKEAKQVINPK 507


>gi|186683738|ref|YP_001866934.1| DEAD/DEAH box helicase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186466190|gb|ACC81991.1| DEAD/DEAH box helicase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 443

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 3/367 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++ERGY   T +Q   +   L   D+L  AQTG+GKT +F L L   L +E 
Sbjct: 8   LSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLLHRLSSEK 67

Query: 67  DRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +    ++      AL + PTRELA QV   +        +   V  GGV ++ +++ L+N
Sbjct: 68  NVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRLKN 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL DH++   LN+SH++ +VLDEAD MLD+GF  DI  IL   PK+R+ L
Sbjct: 128 RVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAILPKQRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +F AT S  I  LA     +   + +A  N     I  +   V    +   + +++R   
Sbjct: 188 LFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLAHLIRRDN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+    R  K L E   Q +A+ G  SQ  R+NAL   ++G  +V +ATD+
Sbjct: 248 WYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L  V++ +L + PE+ +HR GRTGRAG  G +V ++  +       + +  
Sbjct: 308 AARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEYSLLTDIEKLI 367

Query: 364 NVSVVWE 370
              +  E
Sbjct: 368 EQRLPRE 374


>gi|134113286|ref|XP_774667.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257311|gb|EAL20020.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 559

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  
Sbjct: 128 ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA 187

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 188 MVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 247 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    +  LA ++  D ++VNI S +   + ++     +    D+ + +++
Sbjct: 307 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLS 366

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L     +N   ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 367 HLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 426

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 427 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 486

Query: 356 AER---LFREANVSVVWE 370
           A     + RE+   +  E
Sbjct: 487 ARELVQILRESKADIPPE 504


>gi|134113284|ref|XP_774668.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257312|gb|EAL20021.1| hypothetical protein CNBF3470 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 546

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  
Sbjct: 115 ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 175 MVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 234 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    +  LA ++  D ++VNI S +   + ++     +    D+ + +++
Sbjct: 294 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLS 353

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L     +N   ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 354 HLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 413

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 414 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 473

Query: 356 AER---LFREANVSVVWE 370
           A     + RE+   +  E
Sbjct: 474 ARELVQILRESKADIPPE 491


>gi|328779178|ref|XP_623193.3| PREDICTED: probable ATP-dependent RNA helicase DDX5-like [Apis
           mellifera]
          Length = 588

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 191/376 (50%), Gaps = 10/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++GY   T++Q       L  +D++  AQTGSGKT+ + L  
Sbjct: 112 IQYFEEGNFPPYVLEEIHKQGYSQPTAIQAQGWPIALSGRDLVAIAQTGSGKTLGYVLPA 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +  R S    P+AL +APTRELA Q+           GV      GG     + 
Sbjct: 172 IVHIIHQ-PRLSNGDGPIALILAPTRELAQQIQEVANCFGEAAGVRNTCIFGGAPKGPQA 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 231 HDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R++LM+SAT    +  LA+++  D + +NI S     +    + V V        +   
Sbjct: 291 DRQVLMWSATWPKEVRALAEDFLSDYMHLNIGSLTLSANHNIIQIVDVCQEFEKDLKLYR 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   T+ +    +Q +++ G+ +QQER + LQ  + GR
Sbjct: 351 LLQEIGNEKENKTIIFVETKRKVDDITRNIRRDGWQALSIHGDKNQQERDHVLQEFKSGR 410

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A + +ATDVAARG+D+ D++ VI+ +  S+ E+ +HR GRTGR  + G +  F    NM+
Sbjct: 411 APILVATDVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRRRQTGTAYAFFTSHNMK 470

Query: 354 R--RAERLFREANVSV 367
                  + REA  ++
Sbjct: 471 HAGDLIEVLREAGQNI 486


>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 419

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/407 (32%), Positives = 208/407 (51%), Gaps = 9/407 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +     + +A+ + GY   T +Q   +   L  +D+L  AQTG+GK+ AF L +  
Sbjct: 2   SFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +  ++     A  AL +APTRELA+Q+   +        +   V  GGV+++ +   
Sbjct: 62  QLNSLPNK---EKAVKALVLAPTRELAIQINESIATYGQLLPLKHQVVYGGVNINTQISG 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D +  + L +  +   VLDEAD MLD+GF  DI+ ++   P KR
Sbjct: 119 LKKGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRMLDMGFIHDIKKVVALLPIKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P IT LA    K+ VRV +   +     +      V  +++   ++++L+
Sbjct: 179 QTLFFSATMPPEITKLANTLLKNPVRVEVTPVSSTAEKVTQVVYAVDKANKPKLLLHLLK 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    R  K LA+   Q  A+ G  SQ  R NALQ  + G+ +V IA
Sbjct: 239 SEVRDHVLVFTRTKHGADRLVKFLAKQGVQAAAIHGNKSQNARQNALQAFKSGQLKVLIA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ +L+ VI+ +L + PE  +HR GRTGRAG  G ++       +   + + 
Sbjct: 299 TDIAARGIDVEELKFVINFDLPNEPETYVHRIGRTGRAGASGKALSFCDLEERPYLQSIN 358

Query: 361 REANVSVV---WEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKM 403
              N ++      P P+ +        +R LQ+     S   + KK 
Sbjct: 359 NLTNQAIPVINEHPFPATDKFVAVPLPKRPLQNKSEKASTNKNRKKR 405


>gi|158257008|dbj|BAF84477.1| unnamed protein product [Homo sapiens]
          Length = 1032

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQDGGQNESFKRYEEE 936


>gi|126274138|ref|XP_001387431.1| RNA helicase involved in maturation of 18S rRNA [Scheffersomyces
           stipitis CBS 6054]
 gi|146286171|sp|A3GFV3|FAL1_PICST RecName: Full=ATP-dependent RNA helicase FAL1
 gi|126213301|gb|EAZ63408.1| RNA helicase involved in maturation of 18S rRNA [Pichia stipitis
           CBS 6054]
          Length = 399

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKPDLLKGIYGYGFEAPSAIQSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + A    AL ++PTRELAVQ+   ++ L     +    CIGG  V  + + 
Sbjct: 87  AID------TNAKDCQALILSPTRELAVQIQNVVKHLGDYMNIHTHACIGGTHVGDDIKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV GTPGR+ D ++ + L+  ++K ++LDEADE+   GF++ I  +    P   
Sbjct: 141 LKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           ++++ SAT+S  +  +   +  D V++ +  +      I            + + + ++ 
Sbjct: 201 QVVVVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+  T  + +  F VV++ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERDSIMNDFRTGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG+++ +I +         
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGVAINLITKEDVATLRDF 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EKYYSTKIREMPM 393


>gi|5059027|gb|AAD38874.1|AF110007_1 p68 RNA helicase [Molgula oculata]
 gi|5059032|gb|AAD38877.1|AF110009_1 p68 RNA helicase [Molgula oculata]
          Length = 618

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 180/376 (47%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  I   LS++G+ + T +Q       +   D +  A+TGSGKT+AF L     
Sbjct: 149 FEEAGFPDYIYGTLSKQGFSDPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLAFILPAIVH 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A+     P   P+ L + PTRELA QV +      + + +      GG S   + RDL
Sbjct: 209 INAQ-PYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQLRDL 267

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +  K  N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 268 ERGCEIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 327

Query: 182 MLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            LM+SAT    +    A            ++    + +I     +    ++D  ++ ++ 
Sbjct: 328 TLMWSATWPKEVSKLAADFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLME 387

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
               +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R GR+ +
Sbjct: 388 EIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPI 447

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+ D++ VI+ +  S  E+ +HR GRT RA +KG +      +  ++A+
Sbjct: 448 LVATDVASRGLDVSDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAK 507

Query: 358 R---LFREANVSVVWE 370
               + +EA  +V  +
Sbjct: 508 DLIAILQEAKQAVNPK 523


>gi|61679843|pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
          Length = 400

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +   
Sbjct: 21  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 81  EKVKPKLNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     ++DEAD+ML   F+  IE IL   P  
Sbjct: 135 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 194

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 195 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 373

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 374 EQELGTEIAAIPA 386


>gi|149909603|ref|ZP_01898256.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149807307|gb|EDM67260.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 446

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/421 (30%), Positives = 204/421 (48%), Gaps = 8/421 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    +    I  AL    Y  +T VQ+  +    R KD+L +AQTG+GKT AF L + 
Sbjct: 1   MKFSSYSFTPEILRALDACNYDQMTPVQQQAIPAAGRGKDILANAQTGTGKTAAFALPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A+  +   + +  AL + PTRELA QV   ++       + V    GGV +  + +
Sbjct: 61  QQI-ADTPKDIHSGSVRALILVPTRELAAQVTDNIKAYSQFMELNVVSVYGGVKMETQTK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V TPGRL +H++    N+++++ +VLDEAD MLD+GF  DI  IL+S    
Sbjct: 120 QLKQGVDVLVATPGRLLEHLQLNHTNLANVEHLVLDEADRMLDMGFITDIRKILESISND 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+S  +  LA       V V+ + EN   S I +    V    +   +  ++
Sbjct: 180 FQTMLFSATLSQQMKHLANELLTSPVIVSASKENSTASTIKHVIHPVEQRRKQELLSELI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K  +VF +T+ + +   K L     +     G+  Q  R  AL   ++G+ R  +
Sbjct: 240 GTKNWKQVLVFVNTKEAANNIVKELKLDGIKADVCHGDKGQGARRRALTEFKEGKIRALV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L+ V++ +L    E+ +HR GRTGRAG  G +V  + +  +     +
Sbjct: 300 ATDVAARGLDVQGLKYVVNYDLPFLAEDYIHRIGRTGRAGETGNAVSFVCREEEHGLADI 359

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVDVLLAKHDPEKI 416
                  +  E     E +  RD  R++ D       +  Q    K V     +H P+  
Sbjct: 360 EAMIGYKIEREVVKGYE-VSNRD--RLIADISGRAAHERRQPRRNKAVGEEKVEHKPKTT 416

Query: 417 A 417
           A
Sbjct: 417 A 417


>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
 gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
          Length = 442

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 194/395 (49%), Gaps = 10/395 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + +AL+++GY   T++Q+  +   + E+DVL SA TG+GKT AF L    
Sbjct: 5   TFDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAIQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     AP  L + PTRELA+QV  + E L A T + +A   GGV+       
Sbjct: 65  HLLDYPRR--KPGAPRVLVLTPTRELAMQVAEQAEELSAFTNLSIATITGGVAYQNHGEV 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 123 FNKNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNI 238
           + L+FSAT+   +                A  +R+      +      +   +   +   
Sbjct: 183 QTLLFSATLEGELLVDFAGRLLTDPVEIDAEPSRRERKKIQQWFYHADSNEHKIKLLARF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        IVF   R  V   ++ L +   +   L GE++Q +R+NA+  +++G   V 
Sbjct: 243 IEEEKVSRGIVFVRRREYVRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG++V  +  +  +   +
Sbjct: 303 VATDVAARGIDIEDVSHVMNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGK 362

Query: 359 LFRE----ANVSVVWEPAPSVEAIRERDAQRILQD 389
           + R         V+    P  +A ++ + + + + 
Sbjct: 363 IKRYTEELLKARVIEGLEPRTKAPKDGEVKTVTKK 397


>gi|238749853|ref|ZP_04611357.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
 gi|238711782|gb|EEQ03996.1| ATP-dependent RNA helicase rhlE [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 188/377 (49%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY   T +Q   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LNADILRAVEEQGYEVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P +R+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPARRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|224088798|ref|XP_002308545.1| predicted protein [Populus trichocarpa]
 gi|222854521|gb|EEE92068.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 100 QQLDYD------IVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++
Sbjct: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSD 393

Query: 359 LFREANVSVVWEP 371
           + R  NV+V   P
Sbjct: 394 IQRFYNVTVEELP 406


>gi|9438227|gb|AAF86585.1| DEAD box RNA helicase [Homo sapiens]
          Length = 724

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 528

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 529 EKLVEILRNIGDERTMVFVETKKKADFTATFLCQEKISTTSIHGDREQREREQALGDFRF 588

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 649 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 696

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 697 TRKGKSTLNTAGFSSSRAPNPVDDES 722


>gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 440

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 188/370 (50%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A S++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL---G 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P AL + PTRELA QV   +           AV  GGV ++ +   L+ G  
Sbjct: 65  ENPRTGKGPRALILTPTRELAAQVHDSVNLYSKYIPTKAAVVFGGVKINPQMMKLRKGLD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 125 VLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILSLLPAKRQNLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    + V+V +A+ N    +I      V  S +   +  ++R +    
Sbjct: 185 ATFSNEIRTLAEGLLDNPVQVEVAARNTSAENIKQSVYPVDQSQKTALLSKLVRDNSWDQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 245 VLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++  +  +    + R     
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGIERLIKKQ 364

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 365 LPRTEVEGFE 374


>gi|253326818|gb|ACT31323.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Rattus norvegicus]
          Length = 728

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/450 (27%), Positives = 200/450 (44%), Gaps = 23/450 (5%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILA 348

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG      
Sbjct: 349 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHS 408

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+G   +++ ++    
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGVGPEMKKLISCPG 468

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                +  + + + V +        D+    + V    + 
Sbjct: 469 MPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKR 528

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 529 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 588

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     ++
Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 648

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               A+ L     V V+ +    V A  E  A      P F +S +G        + A  
Sbjct: 649 DNHLAQPL-----VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRG-------AVFASV 696

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           D  K   G   ++ AG+ + +   PV   S
Sbjct: 697 DTRKNFQGKNTLNTAGISSAQAPNPVDDES 726


>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
 gi|210160006|gb|EEA90977.1| hypothetical protein COLSTE_00821 [Collinsella stercoris DSM 13279]
          Length = 595

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 189/380 (49%), Gaps = 6/380 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY + T VQ A +   L  +DVL +AQTG+GKT AF L   +
Sbjct: 40  TFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMN 99

Query: 61  TLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L       +        PL L + PTRELA Q+      +   TG      +GGVS + 
Sbjct: 100 NLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNP 159

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  L+ G  I++ TPGRL D I     ++  ++ +VLDEAD MLD+GF   +  I+  +
Sbjct: 160 QRDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYT 219

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R+ L+FSAT+         +   D  RV IA        ++   + V+L  ++  + 
Sbjct: 220 RDDRQTLLFSATLDEQAVGSITDLVHDPARVEIAPVTSTADTVEQYVLPVSLEAKNALLA 279

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+  GA  AIVFC T+      ++ LA       A+ G+ SQ +R  AL+  R G   
Sbjct: 280 SVLKREGASRAIVFCRTKHRADACSRRLARAGITCAAIHGDRSQAQRERALKAFRAGECD 339

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDV ARGID+ D+  V++ ++  +P + +HR GRTGRAG  G S+  +  +     
Sbjct: 340 VLVATDVLARGIDISDVRYVVNFDVPEDPVDYIHRIGRTGRAGELGWSLTFVTPDDVAEF 399

Query: 357 ERLFREANVSVVWEPAPSVE 376
             +      +     A  +E
Sbjct: 400 YDIEALMGKTADLFDAEGLE 419


>gi|28958131|gb|AAH47455.1| DDX4 protein [Homo sapiens]
          Length = 690

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 255 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 314

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  ++  E       T V   V  GG  +   
Sbjct: 315 HMMHDGITASRFKELQEPECIIVAPTRELVNKIYLEARKFSFGTCVRAVVIYGGTQLGHS 374

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 375 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 434

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 435 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 494

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 495 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 554

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 555 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 614

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 615 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 662

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 663 TRKGKSTLNTAGFSSSQAPNPVDDES 688


>gi|319937738|ref|ZP_08012141.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
 gi|319807173|gb|EFW03787.1| ATP-dependent RNA helicase dbpA [Coprobacillus sp. 29_1]
          Length = 479

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/422 (30%), Positives = 219/422 (51%), Gaps = 22/422 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E NI   I +AL + GY   T VQ A++    +E+DV+V A+TGSGKT AF + L 
Sbjct: 1   MKFKELNIDGRIQDALEKLGYSEATEVQSAVIPELKQERDVIVKAKTGSGKTAAFAIPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +++ E ++      P  L + PTRELA+QV  + + +     +      G      + +
Sbjct: 61  DSVVWEENK------PQVLVLTPTRELAIQVKEDFDNIGTYKKIKTLAIFGKQPYKFQTQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+   H+VV TPGR+ DH++    + SHLK +VLDEADEML++GF + +E I++  P K
Sbjct: 115 DLKQKTHVVVATPGRILDHLQRGTFDASHLKYLVLDEADEMLNMGFIETVEKIIEKLPVK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT+   I  LA  + K+ V+VNI      +  I+  A  V   ++   ++ ++
Sbjct: 175 RTTCLFSATLPEEIKKLAAKFMKNPVQVNIKQSQVINQKIETYAYEVMSYEKAGFLLKLI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +    +AI+FC T+  V+    +L ++   V  + G + Q +R   +   R G+ +  +
Sbjct: 235 VHEKPSSAIIFCETQERVNEVYDMLYKNGISVHKIHGGMLQTDRLENMNDFRLGKVQFLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ +L    +N +HR GRT R G+ G+++ ++ ++  +R   +
Sbjct: 295 ATDVAARGIDIENISHVINYDLPREAQNYIHRIGRTARIGKAGIAISLLSKDDYKRRMCI 354

Query: 360 FREANVSVVWEPAPSV---------------EAIRERDAQRILQDPLFLDSIQGDEKKMV 404
                 S   +   S+                 +++    ++LQ+ +        ++K +
Sbjct: 355 EDYTETSFDIKDNESIFNTVVNCQSLNELKKMVVQKEKKNKVLQEDIMRLYFSVGKRKKI 414

Query: 405 DV 406
             
Sbjct: 415 AA 416


>gi|303283774|ref|XP_003061178.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457529|gb|EEH54828.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 456

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 214/402 (53%), Gaps = 14/402 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A ++ G+ + + +Q A +   L+ KDV+  AQTGSGKT AF L +   LL +   
Sbjct: 24  EELATAAADLGWKDPSEIQRASIPQALQGKDVIGLAQTGSGKTGAFALPILQELLDKPQA 83

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F       AL ++PTRELA+Q+  + E L A  GV  AV +GGV +  +   L    H+V
Sbjct: 84  F------FALVLSPTRELAIQISEQFEALGAGIGVKCAVLVGGVDMMAQSIQLGKRPHVV 137

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VGTPGR+ DH+       +  L+ + LDEAD +L+L F  +I+ IL   P+ RR  +FSA
Sbjct: 138 VGTPGRVVDHLTNTKGFGLKQLQVLCLDEADRLLNLDFEQEIDQILKVIPRDRRTQLFSA 197

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ V+V ++++    + +  + + V    +D     +     A   
Sbjct: 198 TMTSKVAKLQRACLRNPVKVEVSAKYSTVASLKQQYLFVPAKHKDCYACYLFNELSASTM 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T     +   V     F  + + G++SQ +R  AL   + G   V +ATDVA+RG
Sbjct: 258 MVFTRTCDQTRKLALVARNLGFGAIPIHGQMSQPKRLGALNKFKAGERNVLVATDVASRG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++  N ++ +HR GRT RAGR G+++ ++ Q      +++ R  N  +
Sbjct: 318 LDIPAVDVVINFDVPQNSKDYVHRVGRTARAGRSGLAITLVTQYDVELYQKIERLINKKL 377

Query: 368 VWEPAPSVEAI-----RERDAQRI-LQDPLFLDSIQGDEKKM 403
              PAP  EA+     R  +AQRI LQ     D   G +K+ 
Sbjct: 378 DAYPAPE-EAVLLMHERVNEAQRIALQQIREADEKGGGKKRN 418


>gi|6320041|ref|NP_010121.1| Dhh1p [Saccharomyces cerevisiae S288c]
 gi|729329|sp|P39517|DHH1_YEAST RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|160380644|sp|A6ZXG9|DHH1_YEAS7 RecName: Full=ATP-dependent RNA helicase DHH1; AltName:
           Full=DExD/H-box helicase 1
 gi|4353|emb|CAA46853.1| RNA-helicase of the DEAD-BOX family [Saccharomyces cerevisiae]
 gi|1061279|emb|CAA91586.1| putative RNA helicase [Saccharomyces cerevisiae]
 gi|1431254|emb|CAA98734.1| DHH1 [Saccharomyces cerevisiae]
 gi|151941843|gb|EDN60199.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190405159|gb|EDV08426.1| hypothetical protein SCRG_00654 [Saccharomyces cerevisiae RM11-1a]
 gi|285810876|tpg|DAA11700.1| TPA: Dhh1p [Saccharomyces cerevisiae S288c]
 gi|323309886|gb|EGA63088.1| Dhh1p [Saccharomyces cerevisiae FostersO]
          Length = 506

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +   
Sbjct: 46  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 106 EKVKPKLNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     ++DEAD+ML   F+  IE IL   P  
Sbjct: 160 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT 219

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 220 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 279 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 398

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 399 EQELGTEIAAIPA 411


>gi|254452993|ref|ZP_05066430.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
 gi|198267399|gb|EDY91669.1| ATP-dependent RNA helicase RhlE [Octadecabacter antarcticus 238]
          Length = 439

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/361 (32%), Positives = 194/361 (53%), Gaps = 2/361 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E L  +G V+ T +Q   +   +  +DV+  A+TGSGKT AFGL +   LL E  
Sbjct: 6   PRLIAE-LKSQGIVDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 64

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    +A  AL +APTRELA Q+   LE     T +   + +GG  +  + R L+ G  +
Sbjct: 65  KPEGKTA-RALILAPTRELAKQIQENLEAYTKGTHLKTMLVVGGAGITGQIRKLERGVDL 123

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +   K +VLDEAD+MLD+GF   +  I      +R+ ++FSA
Sbjct: 124 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 183

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  + K+ +RV + +  +    I+     VA + + + ++ ++  H  + A
Sbjct: 184 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 243

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+    +  K+LA   F   ++ G  SQ +R  A+   + G+  + +ATDVAARG
Sbjct: 244 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVTILVATDVAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P+++ V + +L +  EN +HR GRT RAG  GM++     +       + +     +
Sbjct: 304 LDIPEVKHVYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKAMKADI 363

Query: 368 V 368
            
Sbjct: 364 P 364


>gi|118572555|sp|Q0UR48|HAS1_PHANO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 610

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 224/471 (47%), Gaps = 13/471 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   EA+   G+ ++T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 137 NLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEML--S 194

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +    + ++PTRELA+Q+      L  K      + IGG +   E   L  G 
Sbjct: 195 SMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLAKGV 254

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH+         +LK++++DEAD +L++GF D++  I+   P  R+ ++
Sbjct: 255 NLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSIIKILPTDRQTML 314

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+   K           ++HS +   +   V+     R   + + L+ 
Sbjct: 315 FSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYVICDSDTRFRLLFSFLKK 374

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  K  IVF S+  SV  + ++L      V+ L G+L QQ R+N      + ++   I T
Sbjct: 375 HQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQARTNRFFEFCNAQSGTLICT 434

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P+++ VI  +   +P + +HR GRT R    KG S+  +  +      +L 
Sbjct: 435 DVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSEGKGRSLMFLLPSEIGFL-KLL 493

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V +V    P+ + +  +   + ++    +L+    D  +      A H    +   
Sbjct: 494 KEARVPLVEFELPANKILNIQSQLEALITKNYYLNKSAKDGYRSYLQAYASHSLRSVFDV 553

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                +++ ++   +      +SL +   R +      + G   +   +  
Sbjct: 554 HKLDLVKVAKSFGFSTPPRIDISLGASLSRDKKVEGRREYGRQPQQGRRPM 604


>gi|225025644|ref|ZP_03714836.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
 gi|224941594|gb|EEG22803.1| hypothetical protein EIKCOROL_02546 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/377 (34%), Positives = 204/377 (54%), Gaps = 4/377 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+     I  AL+++GY   T++Q A +   L   D+L +AQTG+GKT AF L     
Sbjct: 5   FTNLGLSAEITAALADQGYEQPTAIQTAAIPKVLAGHDLLAAAQTGTGKTAAFMLPSLER 64

Query: 62  LL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L        SPA  P+  L + PTRELA Q+ +          +   V  GG+++ ++  
Sbjct: 65  LRRYATTSTSPAMHPVRMLVLTPTRELADQIDQNTAAYIKNLPLRHTVLFGGMNMDKQTA 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IVV T GRL DH++ K + +  ++ VVLDEAD MLD+GF DDI  I+   PK+
Sbjct: 125 DLRAGCEIVVATVGRLLDHVQQKNIRLDKVEIVVLDEADRMLDMGFIDDIRRIMQLLPKQ 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT SP I  LA+++     +V  A +N   + ++   + +  + + N +  ++
Sbjct: 185 RQTLLFSATFSPPIRKLAQDFMNRPEQVQTAPQNTASASVEQHIIAIDTAQKRNLLERLI 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC T+ SV +  + L      V  + G+ SQQ R   L   + G  RV +
Sbjct: 245 VDLHINQVIVFCKTKQSVDQVARDLKRRGLSVAPIHGDKSQQTRLETLNAFKAGELRVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ E+ +  E+ +HR GRTGRAG +G+++ ++ ++ Q+  E +
Sbjct: 305 ATDVAARGLDIAELPFVINYEMPTQAEDYVHRIGRTGRAGAEGVAISLMDEDEQKMFEAI 364

Query: 360 FREANVSVVWEPAPSVE 376
                  +  E     E
Sbjct: 365 KELIGKELPVERIEGFE 381


>gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago
           truncatula]
          Length = 753

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 157/565 (27%), Positives = 258/565 (45%), Gaps = 37/565 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + ++L +RG   L  +Q A+L P L  +D++  A+TG+GKT+AFG+ + + L   
Sbjct: 114 DLPSQLVDSLRDRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIINGLDDG 173

Query: 66  NDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            D   +S    P AL +APTRELA QV +E++              GGVS   ++  L  
Sbjct: 174 QDSGPYSRRRLPRALVLAPTRELAKQVEKEIKESAPYL--KTVCIYGGVSYVTQQSALSR 231

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVGTPGRL D I G  L +S ++ +VLDEAD+ML +GF +D+E IL+  P KR+ +
Sbjct: 232 GVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEDVEVILEKLPAKRQSM 291

Query: 184 MFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+   +  LA+ Y  + + ++      E        Y     + S R      I  
Sbjct: 292 LFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAISATSTSKRTILSDLITV 351

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V +A
Sbjct: 352 YAKGGKTIVFTQTKR-DADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVA 410

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +   + +R    L 
Sbjct: 411 TDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGTAILMFTGSQRRTVRSLE 470

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R+      +  APSVE + E  A++++   + L+ +  +          K   EK     
Sbjct: 471 RDVGCKFEFVNAPSVEDVLESSAEQVV---VTLNGVHPESIAFFTPTAQKLIEEKGTTAL 527

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                      +  +  SL++    +        V      + + S  +           
Sbjct: 528 AAALAQMSGFSQPPSSRSLITHEQGW--------VTLQLTRDSENSQRYF---------S 570

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLR-----RTVKLDKGI 531
           AR +   L          +G + +  D        ++  D    L          + K  
Sbjct: 571 ARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTISKVT 630

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNS 556
           +L  L  + P    Y     + +N+
Sbjct: 631 KLPPLQDDGPPSDFYGKFSDRERNN 655


>gi|16126090|ref|NP_420654.1| DEAD-box ATP dependent DNA helicase [Caulobacter crescentus CB15]
 gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
 gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
           crescentus CB15]
 gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
          Length = 517

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 8/377 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++       +A+++ GY   T +Q   +   L  +DVL  AQTG+GKT AF L L
Sbjct: 1   MTEFTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       + A  P AL IAPTRELA QV    E     T +  A+ IGGVS   + 
Sbjct: 61  IDRL---QSGRAKARMPRALVIAPTRELADQVAASFEKYAKGTKLSWALLIGGVSFGDQE 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 KKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAI 235
           K++ L FSAT+ P IT L K + +D VR+ +A     +++I     +        +  A+
Sbjct: 178 KKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++   G +  IVFC+ +  V    K L  H +    + G+L Q +R   L   R G  
Sbjct: 238 RALIEKAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGAL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+P +  V + ++  + ++ +HR GRTGRAGR G++  ++     + 
Sbjct: 298 KILVASDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITYMLVTPADDKG 357

Query: 356 AERLFREANVSVVWEPA 372
            +++ +    +   E  
Sbjct: 358 FDKVIKLIGSTPDEEKL 374


>gi|149732732|ref|XP_001496163.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 1 [Equus caballus]
          Length = 725

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 290 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 349

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 350 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 409

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 410 IRQIVQGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 469

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    + V    + 
Sbjct: 470 MPSKEQRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSKR 529

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 530 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G +V    P++
Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPES 649

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 650 DSHLAQPLVK 659


>gi|149732736|ref|XP_001496190.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
           isoform 3 [Equus caballus]
          Length = 691

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 256 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 315

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 316 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 375

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 376 IRQIVQGCNILCATPGRLMDIISKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 435

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++                D+    + V    + 
Sbjct: 436 MPSKEQRQTLMFSATFPEEIQKLAGEFLKSKYLFVAVGQVGGACRDVQQTILQVGQYSKR 495

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 496 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 555

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G +V    P++
Sbjct: 556 GKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGRAVSFFDPES 615

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 616 DSHLAQPLVK 625


>gi|120538559|gb|AAI29874.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
          Length = 615

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 190/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K +E N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L   
Sbjct: 94  LKFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +          +      GG     + R
Sbjct: 154 VHINHQ-PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR 212

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 213 DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 272

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ LM+SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 332

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    ++     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 333 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 392

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 393 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 452

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
              L    REAN ++  +    VE 
Sbjct: 453 VSDLISVLREANQAINPKLLQLVED 477


>gi|254584256|ref|XP_002497696.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
 gi|238940589|emb|CAR28763.1| ZYRO0F11440p [Zygosaccharomyces rouxii]
          Length = 523

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 169/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +   
Sbjct: 30  NTFEDFFLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILARAKNGTGKTAAFVIPTL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    GV   V  GG ++  +  
Sbjct: 90  EKVKPKINKI------QALIMVPTRELALQTSQVVRTLGKHCGVSCMVTTGGTNLRDDIL 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++VGTPGR+ D    K  ++S     V+DEAD+ML   F+  IE IL   P +
Sbjct: 144 RLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQILIFLPPQ 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 204 HQSLLFSATFPITVKEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 263 SKLQVNQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMRQQERNKVFHEFRQGKVRTLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 382

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 383 EQELGTEIAAIPA 395


>gi|268679106|ref|YP_003303537.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617137|gb|ACZ11502.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 407

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 193/379 (50%), Gaps = 4/379 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++   + +A+   G+ + T +Q++++   L  KD++  A TGSGKT +F L +     
Sbjct: 3   FSHLSSPLQKAVHALGFTHPTPIQQSVIPLVLEHKDIVAKAHTGSGKTASFVLPILEN-- 60

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR--DL 121
                    +    L + PTREL VQV      L +   V   V           +  ++
Sbjct: 61  WSAQTHEGKARIRVLVLTPTRELCVQVAEAFVALSSFLHVKPKVVSVIGGEKIGEQLLEI 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  IVV T GRL D +  K +++S +   VLDEAD+MLDLGF  ++  IL+S P+KR+
Sbjct: 121 QKGCDIVVATSGRLLDILNKKQMDLSRVSFFVLDEADKMLDLGFEQELGLILESLPQKRQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT    +  +A      A+ V+I +E      I  R + V   +R   +  +LR 
Sbjct: 181 NLLFSATYPEKMQRIASRITPCAIEVSIEAEAPTLQRITQRVIEVNKENRAPLLRELLRE 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF + + +         +H F   +  G+L+Q++R+  LQ  ++ + RV  AT
Sbjct: 241 NDWDLVLVFMANKRAADNIAVKFRKHSFLAESFHGDLAQEDRTWTLQSFKERKIRVLFAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+ D+  VI+ +L  + E+ +HR GRTGRAG++G+++ +I    +     + +
Sbjct: 301 DIASRGLDIDDVSCVINFDLPRSSEDYIHRIGRTGRAGKEGLAISLIDHEDKAHFALIEK 360

Query: 362 EANVSVVWEPAPSVEAIRE 380
              + +  E     E + E
Sbjct: 361 RCALKLTKEQIKGFELVGE 379


>gi|309792104|ref|ZP_07686577.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
 gi|308225848|gb|EFO79603.1| DEAD/DEAH box helicase domain protein [Oscillochloris trichoides
           DG6]
          Length = 422

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 180/370 (48%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +S +G+   T +Q   +   L  ++++  AQTG+GKT AF L +   LL   
Sbjct: 8   LHPALMQNVSAQGFTQPTPIQAQTIPLALSGQNLIGLAQTGTGKTAAFVLPILQRLLQNR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R        AL + PTRELA Q+   +  L   TG+  A   GGV +  + R L+ G  
Sbjct: 68  QR-----GTQALIVTPTRELAEQINDTIRVLAHGTGLRSAPIYGGVGMEPQERALRAGVE 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL DH+      +  ++ +VLDEAD MLD+GF   I+ IL + P +R+ ++FS
Sbjct: 123 IVVACPGRLIDHLGRGSARLDGVQMLVLDEADRMLDMGFLPAIQRILSALPTRRQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA        ++      R    I +    V    +   ++++L    + +
Sbjct: 183 ATLPAELQQLAATT-APHAKLVQIGLVRPAHTITHAIYPVPPHRKTALLLDLLHKANSGS 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + +A        L    SQ +R  AL   RDGR R+ +ATD+AAR
Sbjct: 242 VLVFTRTKHRANRLLQQIAREGHSAAVLHSNKSQNQRQLALDGFRDGRFRILVATDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI+ ++   P+  +HR GRTGRA R G +  ++      +  ++ R     
Sbjct: 302 GLDVERISHVINYDIPDTPDAYIHRIGRTGRATRSGDAFTLVTPEDASQVRQIERAIGAP 361

Query: 367 VVWEPAPSVE 376
           +        +
Sbjct: 362 LERRQLAGFD 371


>gi|281207155|gb|EFA81338.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1157

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 185/369 (50%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I + L +  Y   T +Q   +   +  ++++  A+TGSGKT+AF L +   +L++ 
Sbjct: 519 LPEKIHQLLKKNEYEKPTPIQAQTIPAIMSGRNIIGIARTGSGKTLAFLLPMFRHVLSQ- 577

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR       + L ++PTRELA+Q+  E +      G+ V    GG ++  +  DL+ GA 
Sbjct: 578 DRPKQGEGMVGLIMSPTRELALQIYSECKKFSKVLGLRVCCVYGGANIGEQIADLKRGAD 637

Query: 127 IVVGTPGRLCDHIRGKGLNISH---LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +      I++   +  +VLDEAD M DLGF   I  I+D+    R+ +
Sbjct: 638 IVVCTPGRMIDILCANNKRITNLRRVSFLVLDEADRMFDLGFGPQIMCIIDNVRPDRQTV 697

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  +A+      + +     +   SD++    +     R   ++ +L    
Sbjct: 698 MFSATFPFKVEQVARKILVKPLEIIAGGRSIVCSDVEQVVEVRPSETRYRRLIELLATWY 757

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K   ++F + + +      +L+   +Q ++L G   Q +R   +   ++    + IAT 
Sbjct: 758 HKGQILIFTNKQDATDNLFGLLSRAGYQCLSLHGSKDQTDRDETISDFKNKIKTILIATP 817

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+ DL LVI+ +   + E+ +HR GRTGRAG KG +   +  +  R A  + + 
Sbjct: 818 LASRGLDVKDLNLVINYDCPDHLEDYVHRVGRTGRAGNKGTAYTFVLPDEGRFAPSIIKA 877

Query: 363 ANVSVVWEP 371
              S    P
Sbjct: 878 LEQSGAKVP 886


>gi|321476533|gb|EFX87493.1| hypothetical protein DAPPUDRAFT_306483 [Daphnia pulex]
          Length = 805

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 4/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + +   + +  + N T +Q   +   L  +DV+  AQTGSGKT AF   +   +L +
Sbjct: 306 NFDEKLMNVIRKSEFTNPTPIQSQAIPAALSGRDVIGIAQTGSGKTAAFLWPMIVHILDQ 365

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D   P   P+ L +APTREL+ Q+  E +      G+ V  C GG S   + +DL+ GA
Sbjct: 366 PD-LKPGDGPIGLILAPTRELSQQIYTEAKKFCKVFGISVVCCYGGGSKWEQSKDLEQGA 424

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR+ D ++ K  N+  +  +VLDEAD M D+GF   +  I + +  +R+ L+F
Sbjct: 425 EIVVATPGRMIDLVKIKATNLQRVTFLVLDEADRMFDMGFEPQVRSICNHARPERQTLLF 484

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA++   D +R+        + D+     ++A + + + ++  L    A 
Sbjct: 485 SATFKKRIEKLARDVLSDPIRIVQGDVGEANQDVTQVIEVIAPTAKYSWLITRLVEFMAS 544

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+    +  L      V  L G++ Q +R+  +   +     + +ATDVA
Sbjct: 545 GSVLIFVTKKANAEELSASLKSRELSVALLHGDMDQVDRNQVISSFKKKEMDILVATDVA 604

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--E 362
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R  E
Sbjct: 605 ARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLVTPADKEFAGHLVRNLE 664

Query: 363 ANVSVVWEPA 372
               VV EP 
Sbjct: 665 GASQVVSEPL 674


>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
          Length = 501

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 78  EXFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 138 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 251

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 252 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 311

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 312 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 371

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 432 LILRIEEVLGKKLPKE 447


>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
 gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
          Length = 535

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 188/377 (49%), Gaps = 10/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N PQ I + + E+ Y+  T +Q       L+ KDV+  A+TGSGKT++F +    
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +         P  L +APTREL  Q+  E       T +    C GGV    + +D
Sbjct: 214 HIL-DTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTSIKTVRCFGGVPQSCQMKD 272

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            Q+G  I V TPGRL D I+    N+S    ++LDEAD ML++GF   ++ I+      R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRD-NAIVNI 238
           + +M++AT   AI   A  +    +++NI   +   +  +     +    DRD      +
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIVEVCQERDRDSKMNEIV 392

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            R    K  ++F  T+ S       L +  ++V  + G+ +Q ER  AL   + G     
Sbjct: 393 KRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKAQAERDRALSDFKSGAVNYL 452

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQRRA 356
           IATD+A+RG+D+ ++E+VI+ E+ S+ EN +HR GRTGR GR  +G ++ +      R A
Sbjct: 453 IATDLASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADARLA 512

Query: 357 ERL---FREANVSVVWE 370
           + L    + A+  V  E
Sbjct: 513 KDLISVLKGAHQEVPSE 529


>gi|6689612|emb|CAB65518.1| ATP-dependent RNA helicase [Yarrowia lipolytica]
          Length = 523

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 167/371 (45%), Gaps = 8/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+ N + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 30  FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQ 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + ++        AL + PTRELA+Q  +  + L    G+ V V  GG ++  +   L
Sbjct: 90  VNPKVNKI------QALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRL 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++  H++VGTPGR+ D    K  ++S     ++DEAD++L   F   IE +L   P   R
Sbjct: 144 EDTVHVLVGTPGRVLDLAGRKVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPWTTR 203

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++  +  SP       +            +      I      V    + + +  +   
Sbjct: 204 QILVFSATSPLTVKAFMDRNLHKPYEINLMDELTLRGITQYYAFVDEKQKLHCLNTLFSK 263

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 264 LDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCS 323

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  N +    ++ +
Sbjct: 324 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQ 383

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 384 ELGTEIKPIPA 394


>gi|27463689|gb|AAO15914.1|AF510054_1 vasa-like [Schistocerca gregaria]
          Length = 588

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 11/375 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             + + + + + + GY   T VQ+  +      +D++  AQTGSGKT AF L + +T+L 
Sbjct: 172 SGLREFVLQNVKKCGYTKPTPVQKYAIPIIAGGRDLMACAQTGSGKTAAFLLPIINTILN 231

Query: 65  ENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +            P A+ ++PTRELA+Q+  E       + V   V  GG S   + + +
Sbjct: 232 DPRELVMTGQGCEPHAVILSPTRELALQIFNEARKFALGSIVKSVVVYGGTSTMHQAQQV 291

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--- 178
             G HI+V TPGRL D +    +N   ++ VVLDEAD MLD+GF  D+E +L+       
Sbjct: 292 ARGCHILVATPGRLMDFLNRGRVNFQSVRFVVLDEADRMLDMGFLPDVEKMLEHPTMVPT 351

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ +M SAT    I  LA  +  + + + +       SD++     V+  D+   +  
Sbjct: 352 GERQTVMVSATFPEEIQRLATKFLSNYLFLAVGIVGGACSDVEQIFYKVSKFDKRAKLTE 411

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR  G K  +VF  T+         L E  F   ++ G+  Q +R  AL   + GR  +
Sbjct: 412 ILREEGGKKVLVFVETKRIADFLAAFLCEQKFPTTSIHGDRLQSQREEALYDFKSGRMGI 471

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---- 353
            +AT VAARG+D+ ++  VI+ +L  + +  +HR GRTGR G +G +      ++     
Sbjct: 472 LVATAVAARGLDIKNVAHVINYDLPKSIDEYVHRIGRTGRVGNRGRATSFYDPDVDAPIA 531

Query: 354 RRAERLFREANVSVV 368
           R   ++ ++AN +V 
Sbjct: 532 RDLVKILQQANQNVP 546


>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
 gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
          Length = 449

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 195/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKVELFCHLLQANRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLMVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 367 LQRREEPDFE 376


>gi|67902058|ref|XP_681285.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|74656894|sp|Q5AUL4|FAL1_EMENI RecName: Full=ATP-dependent RNA helicase fal1
 gi|40740448|gb|EAA59638.1| hypothetical protein AN8016.2 [Aspergillus nidulans FGSC A4]
 gi|259480767|tpe|CBF73711.1| TPA: ATP-dependent RNA helicase fal1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5AUL4] [Aspergillus
           nidulans FGSC A4]
          Length = 399

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F ++   
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|326385724|ref|ZP_08207353.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209703|gb|EGD60491.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 487

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/480 (27%), Positives = 208/480 (43%), Gaps = 21/480 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + I  AL+ +GY + T +Q   +   L  +D+L  AQTG+GKT AF L  
Sbjct: 1   MSYFTELGLAEPILRALATKGYNDPTPIQRQSIPALLEGRDLLGIAQTGTGKTAAFALPS 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+     PAS  + L ++PTRELA Q+   +        + V    GGV + ++ 
Sbjct: 61  LHRLAADPKPKKPASCRM-LVLSPTRELAAQIAENMRGYARNLNLQVDCVFGGVPIGKQA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D I  + L +  ++  VLDEAD+M+DLGF   ++ +    P 
Sbjct: 120 KRLVPGTDILVATPGRLLDLIDSRALTLGRVEIFVLDEADQMMDLGFIHSLKRVAALLPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+  +I  L + +  + VRV +A ++     ++     +   ++   +   
Sbjct: 180 KRQSLFFSATMPKSIEDLGRQFIHNPVRVEVAPQSTTAERVEQYVTFLNQMEKQALLTLR 239

Query: 239 LRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +R   A  +    IVF  T+    R  + L     +  A+ G  +Q +R+ AL+  R G 
Sbjct: 240 IRAMLADKSLDRGIVFTRTKHGADRVARHLGVAGIEARAIHGNKTQAQRTAALEAFRQGS 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATD+AARGID+  +  V + EL + PE  +HR GRT RAG  G+++     + + 
Sbjct: 300 CPILVATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGADGVAISFCAPDEKP 359

Query: 355 RAERLFREANVSVVWEPAPS---VEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               + R   V     P P     EA R     +R  Q+        G           +
Sbjct: 360 YLRDIERLTGVKPTPMPLPDDFLAEAARLPTPPRRPAQENEGGARHDGRRNGPGRGDRPQ 419

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D            R+     +   P     G           +   G     +    F 
Sbjct: 420 GD----------RARSDRSQGDRQRPRRDERGPAADPQRKPRTEHANGPDGEARPKRRFR 469


>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Acyrthosiphon pisum]
          Length = 666

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 187/371 (50%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   + ++G+ N T +Q       L  ++++  AQTGSGKT+A+ L     +  + 
Sbjct: 129 LPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAILHINHQ- 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P+ L +APTRELA Q+ +        T V      GG     +  DL+ G  
Sbjct: 188 PRLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTFVRNTCVFGGAPKGPQVDDLERGVE 247

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+S
Sbjct: 248 IVIATPGRLIDFLERNTTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWS 307

Query: 187 ATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           AT  P +  LA+ +  D ++VN      S N   S +           +  A++  +   
Sbjct: 308 ATWPPEVKNLAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDYEKEQKLYALLTDIFSQ 367

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ SV    K++  + ++ + + G  SQ ER + L   R G+A + +ATD
Sbjct: 368 PDNKTIIFVETKRSVDNIVKLVNRNGWRSIGIHGNKSQNERDHTLNQFRSGQANILVATD 427

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR+ R G +   +  +  R+A+ L   
Sbjct: 428 VAARGLDVDDVKYVINFDYPNSSEDYVHRIGRTGRSSRTGTAFTFVTPSNARQAKDLISV 487

Query: 360 FREANVSVVWE 370
            +EA   V  +
Sbjct: 488 LQEAKQVVNPK 498


>gi|256860908|gb|ACV32356.1| vasa [Scomber japonicus]
          Length = 643

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 183/361 (50%), Gaps = 10/361 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 207 IMTFDEAELCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 266

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 267 LQQLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 326

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + RD++ G ++V GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 327 HQIRDIERGCNVVCGTPGRLLDMIGRGKVGVSKLRYLVLDEADRMLDMGFEPDMRRLVGS 386

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   + V    
Sbjct: 387 PGMPSKEDRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFS 446

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 447 KREQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADF 506

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 507 RSGKCPVMVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 566

Query: 351 N 351
           +
Sbjct: 567 D 567


>gi|73969109|ref|XP_860668.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 11 [Canis
           familiaris]
          Length = 651

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 189/373 (50%), Gaps = 9/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ + E   + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           DVA+RG+ ++ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L 
Sbjct: 397 DVASRGLGNVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELI 456

Query: 361 R---EANVSVVWE 370
           +   EAN ++  +
Sbjct: 457 KVLEEANQAINPK 469


>gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 772

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 206/386 (53%), Gaps = 8/386 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   +  ++
Sbjct: 127 LPQRLVESLEKRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKCITEDD 186

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 +   P  L +APTRELA QV +E+         V           R    L  G
Sbjct: 187 KSSQRRTGRLPRVLVLAPTRELAKQVEKEINESAPYLSTVCVYGGVSYITQR--NALSRG 244

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D I    L +  ++ +VLDEAD+ML  GF +D+E IL++ P KR+ ++
Sbjct: 245 VDVVVGTPGRIIDLINSGSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQSML 304

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  LA+ Y  + ++++      E        Y     A S R      +  Y
Sbjct: 305 FSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYAISTNATSKRSILSDLVTVY 364

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+   +    ++  +     AL G++SQ +R   L   R G+  V +AT
Sbjct: 365 AKGGKTIIFTQTKR-DADEVSMVLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 423

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G +V +   + +R  + L R
Sbjct: 424 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMFTSSQRRTVKSLER 483

Query: 362 EANVSVVWEPAPSVEAIRERDAQRIL 387
           +      +   P  E + E  A++++
Sbjct: 484 DVGCRFEFVSPPGTEEVLESSAEQVI 509


>gi|326533288|dbj|BAJ93616.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 463

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 183/403 (45%), Gaps = 15/403 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE+ +   L  +D+L  A+ G+GKT A+ + +   
Sbjct: 44  FEDYCLKRELLMGIFEKGWETPSPIQESSVPIALTGRDILARAKNGTGKTGAYVIPILER 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D+        AL I PTRELA+Q  +    L    G  V    GG ++  +   L
Sbjct: 104 IDVSKDKI------QALIIVPTRELALQTSQICIELSKHMGCKVMATTGGTNLKEDIMRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q   H+++ TPGR+ D ++     +     +V+DEAD++L   F++ ++ ++   P  R+
Sbjct: 158 QQQVHVIIATPGRILDLMKKGLAVMDTCSMLVMDEADKLLSQDFKNMLDSVISYLPPDRQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    K +  +   +N+  E             V    + + +  +   
Sbjct: 218 ILLYSATFPCTVDQFIKKHMHNPYEINLMEELTLKGI-TQYYAYVQEKQKVHCLNTLFSK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q+ R+      R+G  R  + +
Sbjct: 277 LQINQSIIFCNSTQRVELLAKKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVCS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 337 DLFTRGIDIQAVNVVINFDFPKMSETYLHRIGRSGRFGHLGIAINLITYDDRYALHKIEQ 396

Query: 362 EANVSVVWEPAPSVEA----IRERDAQRILQDPLFLDSIQGDE 400
           E    +  +P P V      + E   +         +  + D+
Sbjct: 397 ELGTEI--KPIPKVIDPHLYVAEYQTEEEFNQLKLSEQKEKDK 437


>gi|317970136|ref|ZP_07971526.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0205]
          Length = 436

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 194/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I EA+ ++GY   +S+Q+  +   L  +DV+ +AQTG+GKT  F L +   L    
Sbjct: 20  LGRPIVEAVLQKGYSQPSSIQQQCIPAVLAGRDVMAAAQTGTGKTAGFTLPMLERLRH-- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      +L + PTRELA QV   ++       +   V  GGV ++ +   LQ GA 
Sbjct: 78  GPHARGRIVRSLVLTPTRELAAQVADNVKAYSRHLDLRSDVVFGGVKINPQITRLQAGAD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D ++   +++  ++ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FS
Sbjct: 138 MLVATPGRLMDLVQQGAISLDRVEILVLDEADRMLDMGFIRDIQKILRLLPAKRQNLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   +I  LA     + V++ +  ENR  + +++      ++ + + + +++  +  + 
Sbjct: 198 ATFETSIRRLATGLLHEPVQLQVTPENRTAATVEHILHPCDMARKPDLLCHLIASNDWQQ 257

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L+       A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 258 VLVFSRTKHGANRVADRLSAEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAAR 317

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L +  E+ +HR GRTGRAG  G +V ++          + R     
Sbjct: 318 GIDIHQLPHVVNLDLPNQAEDYVHRIGRTGRAGHSGHAVSLVAAEEHELLRAIERLTGKK 377

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 378 LPKQEIPGFE 387


>gi|303325606|ref|ZP_07356049.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
 gi|302863522|gb|EFL86453.1| ATP-dependent RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
          Length = 541

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 234/475 (49%), Gaps = 19/475 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  A +  G+ +L  VQ   L   L  +D++V ++TGSGKT  + L +   L  E
Sbjct: 48  DLPEAMHAACARAGWQSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLDPE 107

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   AP AL +APTRELAVQV RE   ++A TG+      GGV   ++   L+ GA
Sbjct: 108 ------LKAPQALVLAPTRELAVQVEREAAVIFADTGIRTVAVYGGVGYKKQMDALREGA 161

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            ++VGTPGR+ DH+  + L++  L+ +V DEAD ML +GF  D++ +    PKKR     
Sbjct: 162 QVIVGTPGRVLDHLLRRTLDLKDLRVLVFDEADRMLSIGFYPDMKEVQRYLPKKRIHTCL 221

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  LA  +  +   ++++ +    +++ +    V   D+D A+V +L     
Sbjct: 222 FSATYPPHVLKLAAEFMSEPALLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETENP 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+T+A+V   T VL    +    LS +LSQ  R   L  +R GR +  +ATDVA
Sbjct: 282 ASAIIFCNTKANVHYVTGVLQGFGYSADELSADLSQNRREAVLDKIRKGRLQYLVATDVA 341

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   ER+ +   
Sbjct: 342 ARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELERIAKHYK 401

Query: 365 VSVVWEPAPSVEAIRE---RDAQRILQDPLF----LDSIQGDEKKMVDVLLAKHDPEKIA 417
           + ++  P P+ E + +        IL+        L+ ++      +   LA+   E+  
Sbjct: 402 IGLMELPLPTDEDVAKVAGTRLTAILEARFRTLTGLERVRVARYAALARELAQQSEEEDD 461

Query: 418 AGFLRI-----HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              L +     H+  L          + + R     D+   +V    R   +   
Sbjct: 462 VQLLAMLLDACHQQSLHENRFPDSEPVPARRKNDAGDAPRSRVDAAGRSEAEPHD 516


>gi|207347082|gb|EDZ73384.1| YDL160Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273565|gb|EEU08498.1| Dhh1p [Saccharomyces cerevisiae JAY291]
 gi|259145084|emb|CAY78348.1| Dhh1p [Saccharomyces cerevisiae EC1118]
 gi|323334302|gb|EGA75683.1| Dhh1p [Saccharomyces cerevisiae AWRI796]
          Length = 506

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +   
Sbjct: 46  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 106 EKVKPKLNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     ++DEAD+ML   F+  IE IL   P  
Sbjct: 160 RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPST 219

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 220 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 279 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 339 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 398

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 399 EQELGTEIAAIPA 411


>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 194/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G    T +Q   + P L+ +D+L +AQTG+GKT AF L L   L  E 
Sbjct: 8   LLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHGSIRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 VLVATPGRLLDLYRQNAVQFARLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA    +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLAGELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGATGQALSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAPSVE 376
           +     P  E
Sbjct: 367 LQRREEPDFE 376


>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 182/378 (48%), Gaps = 10/378 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL +  +   T +QE  +   L  KD+L  AQTG+GKT A+ L + S
Sbjct: 2   TFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIMS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D   P  A   + ++PTRELA Q+ + ++        V ++ I G +       
Sbjct: 62  MLD---DGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLPIYGGNDGNRYDQ 118

Query: 121 LQNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                   A I++ TPGR   HI+   +++S +   VLDEAD MLD+GF +DI  I    
Sbjct: 119 EIKSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQL 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   + +MFSAT+ P I  LAK   K+ V +   + ++    I  +A L     +   + 
Sbjct: 179 PPTCQTIMFSATMPPKIEQLAKTLLKNPVEI-KLAVSKPAEKIAQKAYLCYEPQKLKVLE 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I +       I+F   +  V    + L         +  +LSQ+ER   +   + G   
Sbjct: 238 DIFKAGHLNRVIIFSGKKQKVKEINRALVRMKINSDEMHSDLSQEERDQVMFKFKSGATD 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I        
Sbjct: 298 VLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISDQDVYYF 357

Query: 357 ERLFREANVSVVWEPAPS 374
           +++ R     +   P P 
Sbjct: 358 QQIERFLEKEIEKVPLPE 375


>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
          Length = 650

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 191/379 (50%), Gaps = 13/379 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + Q + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF L + + 
Sbjct: 216 FENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGSGKTAAFLLPIINV 275

Query: 62  LLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           LL++       +    P A+ ++PTREL +Q+  E       + +   V  GG + + + 
Sbjct: 276 LLSDPRDLILTAEHCEPHAIIVSPTRELTLQIYSEARKFAHGSIIKAVVTYGGTAAYHQA 335

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G HI+V TPGRL D +    ++ + ++ VVLDEAD MLD+GF  DIE +++    
Sbjct: 336 QQVMKGCHILVATPGRLLDFVNRGRISFASVRFVVLDEADRMLDMGFMPDIEKMMNHPTM 395

Query: 179 ----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ LM SAT    I  LA  +  D + V +       +D+D +   V   ++   
Sbjct: 396 VPTGERQTLMSSATFPEEIQRLAGKFLSDYLFVAVGIVGGACTDVDQKFYQVTRFEKRPK 455

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V +L+  G    +VF   + +       L+E  F   ++ G+  Q+ER  AL   + G+
Sbjct: 456 LVELLKEEGGDKTLVFVEMKRTADFIAAYLSEQNFPTTSIHGDRMQREREEALADFKSGQ 515

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + +AT VAARG+D+ ++  V++ +L  + +  +HR GRTGR G +G +          
Sbjct: 516 MTILVATAVAARGLDIKNVAHVVNYDLPKSIDEYVHRIGRTGRVGNRGKATSFYDPEADA 575

Query: 352 -MQRRAERLFREANVSVVW 369
            + R   ++  +A   V  
Sbjct: 576 PIARDLVKILNQAEQPVPE 594


>gi|189240548|ref|XP_973126.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 984

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 212/447 (47%), Gaps = 11/447 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
              L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 337 LNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLEE 395

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+A+ + PTREL +Q+G++++       +      GG  +  +  +L+ GA I+V T
Sbjct: 396 LDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELKRGAEIIVCT 455

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      GK  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 456 PGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 515

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+   +  + V +   +    D++   V++    +   ++ +L  +    +I
Sbjct: 516 FPRQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELLGLYHEHGSI 575

Query: 249 V-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           + F   + +     K L +  +  ++L G + Q +R + +   + G+ ++ IAT VAARG
Sbjct: 576 IVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARG 635

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I     R A  + R   ++ 
Sbjct: 636 LDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRYAGDIIRAFELAS 695

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P      S ++ +E + +++     F       ++     +  +   +K A G  
Sbjct: 696 VPIPDPLRALWDSYKSKQEAEGKKVHSGGGFSGKGFKFDENEAAAVTERKKFQKAALGLA 755

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRD 448
                 L    +    S+ + +   ++
Sbjct: 756 DSDDEDLEHDIDQHIESMFATKRTVKE 782


>gi|49475435|ref|YP_033476.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
 gi|49238241|emb|CAF27451.1| ATP-dependent RNA helicase [Bartonella henselae str. Houston-1]
          Length = 467

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++     + +A+   GY   T +Q   +   L+ +DVL  AQTG+GKT +F L +
Sbjct: 5   LNNFDDLGLSAKVIKAVKSVGYTVPTPIQSGTIPHVLQRRDVLGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS  ++ 
Sbjct: 65  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFDKYGINHRLNVALLIGGVSFEQQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  +IE I   +P 
Sbjct: 122 RKLERGVDVLIATPGRLLDHFERGKLLLMGVEILVIDEADRMLDMGFIPEIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V V +   +   S I  R V       D   V  
Sbjct: 182 TRQTLFFSATMAPEITKLTKQFLHSPVTVEVTKASSTASTITQRLVKSGNKAWDKRAVLR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              H      KNAI+FC+ +  +S   + L  H F V AL G++ Q  R + L   +D +
Sbjct: 242 ELIHNEGDKLKNAIIFCNRKRDISELLRSLIRHNFSVGALHGDMDQYSRMSTLADFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  Q+
Sbjct: 302 ITLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGKAFTIVTKTDQK 361

Query: 355 RAERLFREANVSVVW 369
               +   +N  + W
Sbjct: 362 YINAIEEISNEKIEW 376


>gi|39935543|ref|NP_947819.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
 gi|192291134|ref|YP_001991739.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
 gi|39649396|emb|CAE27918.1| possible ATP-dependent RNA helicase [Rhodopseudomonas palustris
           CGA009]
 gi|192284883|gb|ACF01264.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 472

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+   + +  A++  GYV+ T +Q+  +   L  KDVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   
Sbjct: 62  MLEKGRAR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +++DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVN 237
           + L F+AT+   I  + + +  +  ++ ++        +    V         R+     
Sbjct: 179 QTLFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I      KNAI+FC+ +  V+   K L  H F V AL G++ Q  R+ AL+  R G   +
Sbjct: 239 IRGATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G +V ++  + Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMA 358

Query: 358 RLFREANVSVVWEPA-PSV 375
            + +    ++      PSV
Sbjct: 359 AVEKLIGQAISRAEVGPSV 377


>gi|71995724|ref|NP_490761.2| hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
 gi|31746585|gb|AAK29954.2| Hypothetical protein Y65B4A.6 [Caenorhabditis elegans]
          Length = 399

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 87  SLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 141 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + ++++ 
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q++R   ++  R G  RV I
Sbjct: 261 DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+  R    +
Sbjct: 321 STDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDI 380

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 381 EQYYSTQIDEMPMNIADII 399


>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
 gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/421 (28%), Positives = 212/421 (50%), Gaps = 12/421 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++   + + EA    G+ N T +Q   +   L  KD++  AQTGSGKT AF L  
Sbjct: 9   VKTFADLGICEQLVEACERLGWKNPTKIQVEAIPHALEGKDLIALAQTGSGKTAAFALPT 68

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL      +      A  ++PTRELA+Q+  + E L +  G+  AV +GGV +  + 
Sbjct: 69  LQALL--QASVTSVPVFYACVLSPTRELAIQIAEQFEALGSDIGLRCAVLVGGVDMGLQT 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVVGTPGRL DH+      ++  LK ++LDEAD +L+  F   ++ IL    
Sbjct: 127 IALAKRPHIVVGTPGRLLDHLSNTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILTVIS 186

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+  +FSAT++  +  L +   ++ V++ +AS+      +  + +      ++  +V+
Sbjct: 187 RDRKTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSVVETLRQQLLFCPAKYKECYLVH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L      + +VF  T  +      VL     + + ++G +SQ +R  AL   + G   +
Sbjct: 247 ALTLKSGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKRLGALNKFKAGECNI 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+P +++V++ ++ +N ++ +HR GRT RAGR G+++ ++ QN     +
Sbjct: 307 LICTDVASRGLDIPSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWFK 366

Query: 358 RLFREANVSVVWEPAPSVEAI-----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           ++     + +  +  P  E I     R  +A+RI Q  +  +      K   D    + D
Sbjct: 367 QIENLIGIRMS-DIRPHQEEIMLLLERVTEAKRISQKQIK-EPGGKKRKGRGDEDEEEID 424

Query: 413 P 413
            
Sbjct: 425 K 425


>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
          Length = 402

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 175/365 (47%), Gaps = 6/365 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREAN 364
            R   
Sbjct: 364 KRYTG 368


>gi|291165179|gb|ADD81194.1| vasa [Auxis thazard]
          Length = 627

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 188/380 (49%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 195 TFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 254

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 255 QLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQ 314

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R++  G ++V GTPGRL D I    + ++ L+ +VLDEAD MLD+GF  D+        
Sbjct: 315 IREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 374

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 375 MPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKR 434

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++++L+  G++  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 435 EQLLDLLKTTGSERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 494

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     + 
Sbjct: 495 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDA 554

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A   V 
Sbjct: 555 DGQLARSLITVLSKAQQEVP 574


>gi|170742455|ref|YP_001771110.1| DEAD/DEAH box helicase domain-containing protein [Methylobacterium
           sp. 4-46]
 gi|168196729|gb|ACA18676.1| DEAD/DEAH box helicase domain protein [Methylobacterium sp. 4-46]
          Length = 482

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 190/366 (51%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+S  GY   T +Q   +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSEKVLQAVSAAGYTTPTPIQAQAIPHVLARRDVLGVAQTGTGKTAAFTLPMLTRLEQGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + VA+ IGGVS   +   +  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVVENFERYGTNHKLNVALLIGGVSFADQDAKITRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLTGVELLVIDEADRMLDMGFIPDIERIVKLVPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHG 243
           AT+ P I  LA ++  + VR+ +A      S I  R V         R      I     
Sbjct: 185 ATMPPEIQRLADDFLHNPVRIEVARPASTASTIAQRLVATGGEGHEKRKTLRGLIRGAVE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N ++FC+ +  V++  + LA H F V AL G++ Q+ R  AL   R G   + +A+DV
Sbjct: 245 LRNGLIFCNRKRDVAQLQRSLANHGFNVAALHGDMDQRARMAALDAFRSGEVPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + ++  + E+ +HR GRTGRAGR G +  ++ +  ++    +    
Sbjct: 305 AARGLDIPAVSHVFNFDVPHHAEDYVHRIGRTGRAGRSGAAFTLVGRGDEKALAAIESLI 364

Query: 364 NVSVVW 369
              + W
Sbjct: 365 GQPIPW 370


>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 425

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/380 (31%), Positives = 191/380 (50%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+  +GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILELL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA QV            +   V  GGV ++ +   L+ G  
Sbjct: 66  GEKARSNNVRALVLTPTRELAAQVHENAAAYSQNLPLRAEVVFGGVKINPQMMKLRRGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      ++   L+ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+FS
Sbjct: 126 VLVATPGRLLDLFSQNAISFKQLEILVLDEADRMLDMGFIHDIKRILKLLPKERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+N  KDAV V++   N     I    + V  S +  A+  +++      
Sbjct: 186 ATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPVDKSKKSAALKFLIQSRDLSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R   +  +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLATLFQKAGIEAAAIHGNKSQGARTKALAGFKSGEIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L + P + +HR GRTGRAG  G ++ ++ ++   +   +       
Sbjct: 306 GIDIDQLPHVVNFDLPNVPADYVHRIGRTGRAGATGEAISLVSEDEADQLSDIENLIRKP 365

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +  +     + + E    RI
Sbjct: 366 IPRDYLEGFKPVNEVRETRI 385


>gi|255719332|ref|XP_002555946.1| KLTH0H01562p [Lachancea thermotolerans]
 gi|238941912|emb|CAR30084.1| KLTH0H01562p [Lachancea thermotolerans]
          Length = 491

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 167/373 (44%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +DVL  A+ G+GKT AF +   
Sbjct: 29  NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPIAIAGRDVLARAKNGTGKTAAFVVPTL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 89  EKVKPKVNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D    K  ++S     V+DEAD+ML   F+  IE IL   P  
Sbjct: 143 RLNEPVHILVGTPGRVLDLASRKVADLSECPLFVMDEADKMLSRDFKAIIEQILTFLPPV 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 203 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMDELTLKGI-TQYYAFVEERQKLHCLNTLF 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + Q ER+      R G+ R  +
Sbjct: 262 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQSERNKVFHEFRQGKVRTLV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 322 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 381

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 382 EQELGTEIAAIPA 394


>gi|196230330|ref|ZP_03129193.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196225927|gb|EDY20434.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 443

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 168/358 (46%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL + GY   T +Q A +   L   DV+  AQTG+GKT AF L +   L    
Sbjct: 8   LEPRLLSALKDAGYTEPTPIQGAAIPKILSGSDVIGIAQTGTGKTAAFVLPMLQLLANRP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+              +A   GGV    + + L++   
Sbjct: 68  P--VSGRKIRALVLAPTRELAAQIEENARAYARYVPFRMATIFGGVGERPQIQALRDNVE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++  PGRL D ++ +  + + L+ +VLDEAD MLD+GF  DI  I+   P+KR+ L+FS
Sbjct: 126 LIIACPGRLLDLMQQRHGDFTGLEFLVLDEADRMLDMGFLPDIRRIVKQLPRKRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  L   +  +   V +   +     +   A  V    +   +  +L   G ++
Sbjct: 186 ATLSGEIEALTHEFLHNPATVQVGRRSNPAETVTQVAYEVPKHLKLALLAALLNEPGMES 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L     +   L    +Q +R  AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGADRIARKLESSGIKSATLHSNRTQNQRLRALAAFKAGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+  +  VI+ +     E+ +HR GRTGRA   G ++  +  +       L R   
Sbjct: 306 GIDVDGISHVINYDFPMTNEDYVHRIGRTGRANAVGDALSFVCPDEHGDLRSLERFIG 363


>gi|119470499|ref|ZP_01613202.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446200|gb|EAW27477.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 408

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 194/379 (51%), Gaps = 5/379 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   + +A+ + GY   TS+Q+  +   L+ +D+L SA TG+GKT AF +   
Sbjct: 1   MQFSEFDLDTKLLDAIDKMGYEKPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P  A   L + PTRELA Q+  + E L  +T + + V  GG++    + 
Sbjct: 61  QYLL-DFPRREPGFA-RVLIMTPTRELAYQIHEQCELLAKRTHLKIGVVTGGINYGTHKE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    +++ TPGRL +++  +  +  H++ +++DEAD MLD+GF+ ++  I D +  +
Sbjct: 119 IFEKNNDVLIATPGRLMEYLETENFHAEHVEMLIIDEADRMLDMGFKKEMSRICDEAKNR 178

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           R+  +FSAT    ++   A+    D   +   S  ++ + I     L      +   +VN
Sbjct: 179 RQCFLFSATLEGDSVERFAETTLNDPALLEAESSRKEKAKIHQWVHLADDYHHKLELLVN 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AIVF  TR  +      L  +  +   L GE+ Q +R  A++    GR ++
Sbjct: 239 TLNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGRTKI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ ++  +      
Sbjct: 299 LIATDVAARGIDVSDISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLVEAHDIGILY 358

Query: 358 RLFREANVSVVWEPAPSVE 376
           ++ R     +       +E
Sbjct: 359 KVERYIEQKLKRRVIKGIE 377


>gi|262377334|ref|ZP_06070558.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
 gi|262307787|gb|EEY88926.1| II DNA/RNA helicase [Acinetobacter lwoffii SH145]
          Length = 624

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 158/589 (26%), Positives = 247/589 (41%), Gaps = 36/589 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +    + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFADFSLDESLTQALDALGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       DR    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 63  NALANQDTLVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIG 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +P I TLA+    D +R++I + +  ++DI            + 
Sbjct: 183 ELAANRKQTLMFSATFAPRIITLAERMMNDPMRISIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYRE 362

Query: 353 QRRAERLFR----EANVSVVW--EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + +   L        NVS +   EP+P         A R                     
Sbjct: 363 RGKIRALEDFLDARLNVSEIEGLEPSPPPARGSRDGAGRGRGRDGGRRDGGRGGFGGGRR 422

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              + +         +    G   P           R  F +D      G       +G 
Sbjct: 423 FEGESN--------FKRREGGDDRPRRSFDDKPRGERPAFGEDRPRRDFGDRPAPRREGG 474

Query: 467 -----SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                         +   +     P   R  G   +   +   +P   F +  A      
Sbjct: 475 FGDRPQRSFDDRPKRDFGDR----PAPRREGGFGDRPQRSFDDRPKRDFGDRPAPR---- 526

Query: 522 RRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
           R     D+        G + D++  +  G+  +  +D   +   R +G 
Sbjct: 527 REGGFGDRPRSNDDNRGNRVDYKPAREGGYGDRPKRDFGDRPAPRREGG 575


>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
 gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           sp. SG-1]
          Length = 496

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/491 (27%), Positives = 240/491 (48%), Gaps = 19/491 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   + + E L +      T +QE  +   ++ KDV+  AQTG+GKT+AF L +
Sbjct: 1   MNNFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
                             AL + PTRELA+Q+  E+  L      +  +   GG  V ++
Sbjct: 61  IENFDFNQQSI------QALIVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDVEKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+    IVVGTPGR+ DHI    +++S L ++VLDEAD+ML +GF  ++E I+  +P
Sbjct: 115 LNKLRKNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHIGFLKEVEMIIRETP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L+FSATI   I TLAK + K    +++  +      ++ +AV V    +   ++ 
Sbjct: 175 KTRQTLLFSATIPDEIKTLAKKHMKSPEYISVERKQGPAKSVEQKAVFVNDRAKQATLIE 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ +    A++FC T+  V++  + LA   F    L G+LSQ +R   ++  RD   ++
Sbjct: 235 MIKEYRPYLAVIFCRTKRRVTKLYEALASEGFMCDELHGDLSQAKREKVMKRFRDAEFQL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + ++ +HR GRTGRAG KG++V       + +  
Sbjct: 295 LIATDVAARGLDVEGITHVFNYDIPEDADSYVHRIGRTGRAGEKGLAVTFYSPQQKDQLA 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI- 416
            + +E N+ +  +   ++    + + ++  +     +    D+K   D   ++   E   
Sbjct: 355 EIEKELNIRLPKQNIGNIIDRDDTEKRKPKKAASRKEHTSRDKKPREDRKGSRSKQENHS 414

Query: 417 ---------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                    AA   R  +    + +     +++  ++  R     F        N +GS+
Sbjct: 415 RNGKGKKGEAADSTRSSQKPKTSSKPKKRSNMLEAKEVKRGALHKFADKNSGGKNKRGST 474

Query: 468 WFSLSVGSKQK 478
             S + G + +
Sbjct: 475 SKSSAEGRRGR 485


>gi|118444590|ref|YP_878428.1| ATP-dependent RNA helicase [Clostridium novyi NT]
 gi|118135046|gb|ABK62090.1| ATP-dependent RNA helicase [Clostridium novyi NT]
          Length = 371

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+N+   + I + LS  G  + T +QE  +      KDV+  AQTG+GKT+AF L +
Sbjct: 1   MKDFKNLGISKNIIDILSREGIKSPTPIQENSIEFIKMGKDVIAEAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  E      ++    L + PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISLE------SNFVQVLIVTPTRELAIQITEEAMKLKKAKDINILAAYGGKDIQSQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    +++ TPGRL DH+    + +  LK +VLDEAD+ML +GF++++E I+  + K
Sbjct: 115 KKLKGNIQLIIATPGRLLDHLNRSTIKLDKLKTLVLDEADQMLYMGFKNEVEKIISYTSK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L FSAT++  +  LA  Y K+   V++ +E     +I    V      + +A+ ++
Sbjct: 175 KHQTLCFSATMNSDVKKLAYRYMKEPKVVSVKAEEVTLKNIQQFVVETTDRRKQDALCSV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G+L+Q +R   ++  ++   +  
Sbjct: 235 LDEDNPFMAIIFCRTKRRVDNLEEALHKRGYNCDKLHGDLAQAKRERVMKKFKNMDTQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  E 
Sbjct: 295 IATDVAARGLDITGVTHVYSYDIPENAESYIHRIGRTGRAGEEGKTCLFIDPKDKRLLET 354

Query: 359 LFREANVSVVWEPAPS 374
           + +E  +++      +
Sbjct: 355 IEKEIKLTIPRRNIET 370


>gi|114327981|ref|YP_745138.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
 gi|114316155|gb|ABI62215.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
          Length = 763

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 5/376 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++   + +  A++E GY++ T +Q   +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 224 LFADLGLSEPVQRAITEMGYLHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMMD 283

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +DR + A  P +L + PTRELA+QV            +  A+ IGG S++ +R  
Sbjct: 284 IL---SDRRARARMPRSLILEPTRELALQVAENFVKYGQYLKLNHALLIGGESMNDQRDV 340

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D     GL ++  + +V+DEAD MLD+GF  D+E I+   P  R
Sbjct: 341 LSKGVDVLIATPGRLIDLFDRGGLLLTDTRILVIDEADRMLDMGFIPDVERIVSLLPHNR 400

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  LA  + ++   + +A      + I     LV   D+  A+ ++LR
Sbjct: 401 QTLFFSATMAPEIRRLADAFLQNPKEITVAKPASVATTITSGLALVGEMDKRKALRHLLR 460

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NA++FC+ +  V   TK L +H F    L G+L+Q  R + L+  + G  ++ + 
Sbjct: 461 QEKVQNALIFCNRKRDVDILTKSLVKHGFAAGPLHGDLAQSLRFSTLEKFKAGSLQLLVC 520

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + ++  + E+ +HR GRTGRAGR+G +  +   + +   + + 
Sbjct: 521 SDVAARGIDIGGLSHVFNFDVPIHAEDYVHRIGRTGRAGREGAAFTLASPDDKFAVDAIE 580

Query: 361 REANVSVVWEPAPSVE 376
           +  N  +       +E
Sbjct: 581 KLINAPIPRIEIEGLE 596


>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
 gi|52782790|sp|Q9CWX9|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
           Full=DEAD box protein 47
 gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
 gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
 gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
 gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
           musculus]
          Length = 455

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK         D +
Sbjct: 378 IEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARMELREH---GEKKKRKREDAGDDDDK 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|226228176|ref|YP_002762282.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226091367|dbj|BAH39812.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 374

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 191/376 (50%), Gaps = 8/376 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + + +AL + GY   T +Q   +   L  +D++  AQTG+GKT +F L +  
Sbjct: 2   TFADLGLARPLLDALHDAGYERPTPIQREAIPLALLGRDLIGLAQTGTGKTASFTLPVVH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R         L + PTREL +QV   +    +++ V V    GGV    + + 
Sbjct: 62  RLLGGPRR------TRVLVLTPTRELCLQVEESVRKYSSRSPVDVIPVYGGVGYEPQEKA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV TPGRL DH+  + ++ ++L+ +VLDEAD MLD+GF   I  I+D  P+ R
Sbjct: 116 LRRGVDVVVATPGRLLDHLEKRNVDFTYLETLVLDEADRMLDMGFAPQINRIVDQIPRYR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P +  L + Y +  V V +   +   + + +    V    ++  +V++L 
Sbjct: 176 QTLLFSATMPPEVEALGRKYLRKPVVVQVGRRSSAATTVTHAVYPVPRHRKNELLVHLLT 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T++   R    LA+      A+  + SQ+ER  AL+  + G+ RV +A
Sbjct: 236 NSDHESVLVFTRTKSGADRVVSDLAQAKIHAGAMHADKSQRERIQALEDFKSGKLRVLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A RG+D+  +  VI+ ++   PE+ +HR GRTGRA   G +   +          + 
Sbjct: 296 TDIAQRGLDISGITHVINFDVPQQPEDYVHRIGRTGRAASTGDAYTFMSAEEIGMVRTIE 355

Query: 361 REANVSVVWEPAPSVE 376
           R     +     P  +
Sbjct: 356 RTIGQEIPRVSVPGFD 371


>gi|302408591|ref|XP_003002130.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
 gi|261359051|gb|EEY21479.1| ATP-dependent RNA helicase FAL1 [Verticillium albo-atrum VaMs.102]
          Length = 401

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 28  TFESMSLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 88  VID------TAVRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 142 LDYGQHIVSGTPGRVADMIRRRDLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 262 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 322 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 381

Query: 360 FREANVSVVWEPAPSVEAI 378
               +  +   P    + I
Sbjct: 382 ELYYSTQIDEMPMNVADLI 400


>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 463

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/406 (28%), Positives = 200/406 (49%), Gaps = 9/406 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     + +A     + + + +QE  +   L+ +D++  A+TGSGKT AF + +  
Sbjct: 30  TFESLGVCPELCKACDVLQWEHPSKIQEETIPYALQGRDLIALAETGSGKTGAFAIPIIQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL             A  +APTREL VQ+G++ E L A   +  A  +GG+ +  +   
Sbjct: 90  KLLDAAPH---RKLTWACVLAPTRELCVQIGQQFEGLGASINLTTATIVGGLDMVTQAMS 146

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V +PGRL DH+      ++  +K +V+DEAD +L + F D +  I+ S P+ 
Sbjct: 147 LSKKPHIIVASPGRLVDHLENTKGFHLKTIKFLVMDEADRLLGMDFEDALNKIVQSCPRD 206

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT++  ++ L +      V+  +A +      +    + V    +   +  +L
Sbjct: 207 RQTFLFSATMTNKVSQLQRASLTRPVKCEVARKFDVAKGLVQNYMFVPHKHKHAYLAALL 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      ++F  T  +  R    L       V L G+++Q  R  AL   R G   V +
Sbjct: 267 AHFKLSTVMIFVDTCLNAQRMATTLRHLGHNCVCLHGKMTQTHRLGALNQFRAGTRSVLV 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P +++VI+ ++  NPE  +HR GRT RAGR G SV ++ Q      +R+
Sbjct: 327 ATDVAARGLDIPSVDVVINFDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYDIEPFQRI 386

Query: 360 FREANVSVVWEPAPSVE---AIRERDAQRILQDPLFLDSIQGDEKK 402
             +    +   P    E   +++E+  + +    L +   + D K+
Sbjct: 387 ENKQGKKMEEFPEVKEENAISLQEKVLEALRSTQLEMREQEEDIKE 432


>gi|168017610|ref|XP_001761340.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687346|gb|EDQ73729.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 589

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 193/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    Y   T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 140 VNTFAEIDLGPALNENIRRCKYTKPTPVQRYAIPISLHGRDLMACAQTGSGKTAAFCFPI 199

Query: 59  ASTLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++        R    + PLAL ++PTREL+ Q+  E +    +TG+ V VC GG  V
Sbjct: 200 IAGIMRNTPPGRSRGGRKALPLALILSPTRELSCQISDEAKKFAYQTGIKVVVCYGGAPV 259

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H + R+++ G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I++
Sbjct: 260 HNQLREMERGVDILVATPGRLSDLLERARVSLSMVRYLALDEADRMLDMGFEPQIRRIVE 319

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 320 QMDMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDSD 379

Query: 231 RDNAIVNILRYH-------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + +++++               +VF  T+         L    F    + G+ SQQER
Sbjct: 380 KRSMLMDLIHAQSALAPPGQQSLTLVFVETKKGADSLEDWLCRMGFPATTIHGDRSQQER 439

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL+  R G   + +ATDVAARG+D+P +  V++ +L S+ ++ +HR GRTGRAG+ G+
Sbjct: 440 EHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPSDIDDYVHRIGRTGRAGKSGV 499

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  Q   R    L  E++  V 
Sbjct: 500 ATAFFNEKDQSLARSLAELMTESSQEVP 527


>gi|154342919|ref|XP_001567405.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134064737|emb|CAM42842.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 190/388 (48%), Gaps = 17/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E +S   Y   T VQ+  +   L+  D++  AQTGSGKT A+ +   + +L  N
Sbjct: 132 LSPALAENVSRCRYQKPTPVQKYGIPCVLKGSDLMACAQTGSGKTAAYLIPAINFMLVNN 191

Query: 67  -DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +R  P +   AP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L 
Sbjct: 192 LNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELT 251

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         
Sbjct: 252 RGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPP 311

Query: 183 LM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT    I  +A+ +      + +        +I      V   D+   ++
Sbjct: 312 PGERQTLLYSATFPKEIQQMAREFLYRHYFLQVGRVGSTTENITQDVRWVEDMDKRGCLL 371

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  R
Sbjct: 372 EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCR 431

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++    +  +   
Sbjct: 432 VLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNEKNRNVV 491

Query: 357 ER---LFREANVSVVWEPAPSVEAIRER 381
           +    L RE N +V     P V+A+ ++
Sbjct: 492 DDLIPLLRETNQTV----LPEVQALAKK 515


>gi|319407348|emb|CBI80993.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 501

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N+   + + +A+   GY   T +Q   +   L++KDVL  AQTG+GKT +F L +
Sbjct: 37  LDNFDNLGLSKKVIKAIKSAGYTIPTPIQSRTIPYILQKKDVLGIAQTGTGKTASFVLPM 96

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS   + 
Sbjct: 97  LTLLEKGRAR---ARIPRTLILEPTRELAAQVKENFDKYGVNHNLNVALLIGGVSFEHQD 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD ML++GF  D+E I   +P 
Sbjct: 154 RKLERGADVLIATPGRLLDHFERGKLLLVGVEILVIDEADRMLNMGFIPDVERICKVTPF 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V + I   +     I  R V       D   V  
Sbjct: 214 TRQTLFFSATMAPEITQLTKQFLHSPVYIEITEASSTAKTITQRLVKSESKPCDKKAVLK 273

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  +S   + L +H F V  L G++ Q  R+N L   ++ +
Sbjct: 274 ELIQNEGDELKNAIIFCNRKKDISELFQYLIKHNFSVGTLHGDMDQHSRTNTLASFKNNK 333

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IA+DVAARG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  ++
Sbjct: 334 FILLIASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEK 393

Query: 355 RAERLFREANVSVVW 369
               +   +   + W
Sbjct: 394 YICAIEEISKEKIEW 408


>gi|226021|prf||1406327A growth regulated nuclear 68 protein
          Length = 594

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 80  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 139

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 140 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 199 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 259 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 318

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 319 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 378

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 379 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 438

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 439 VLREANQAINPKLLQLVED 457


>gi|330804914|ref|XP_003290434.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
 gi|325079445|gb|EGC33045.1| hypothetical protein DICPUDRAFT_37328 [Dictyostelium purpureum]
          Length = 600

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 115/414 (27%), Positives = 200/414 (48%), Gaps = 6/414 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +LA+ 
Sbjct: 34  LTEKIHLMLKKFQYEKPTPIQSQTIPAIMSGRDLIGIARTGSGKTLAFLLPMFRHILAQ- 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P    + L ++PTRELA+Q+  E +      G+ VA   GG S+  +  DL+ GA 
Sbjct: 93  PKTVPGDGMIGLIMSPTRELALQIFSECKKFTKNLGLRVACIYGGASISEQIADLKRGAD 152

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +     +  N+  +  +VLDEAD M D+GF   I  ++D+    R+ +
Sbjct: 153 IVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQIMCVIDNIRPDRQTI 212

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT  P +   AK      + +     +   SDID    +     R   ++ +L    
Sbjct: 213 MFSATFPPKVENAAKKILTKPLEIIAGGRSIVSSDIDQHVEVRPSETRFRRLIELLSLWY 272

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K   ++F + + +     + LA   +Q ++L G   Q +R   +   ++    + IAT 
Sbjct: 273 HKGQILIFTNRQETTDNLFRQLASSQYQCLSLHGSKDQTDRDETITDFKNKVKTILIATP 332

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+ DL LV++ +   + E+ +HR GRTGRAG KG +   I    +R +  + + 
Sbjct: 333 LASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNKGTAYTFITPEEERYSPSIIKA 392

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              S    P   ++ + E   ++  +    L +  G   +      A+ + + I
Sbjct: 393 LEQSGSKVPD-ELKKLNESYDRKRKEGKEVLLAPTGFTGRGHKFDAAEENKKNI 445


>gi|291387348|ref|XP_002710262.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Oryctolagus
           cuniculus]
          Length = 1030

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 250/560 (44%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 382 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 440

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 441 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 500

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 501 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 560

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 561 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 620

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 621 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 680

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 681 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 740

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDS-------IQGDEKKMVDVLLAKHDPEKIAAG 419
               P+   +   +   Q+  +  +   S        + DE +       K   +K A G
Sbjct: 741 GTTVPSDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKK-LQKAALG 799

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 800 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 859

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++ +M     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 860 AQKNLGIESQDVMQQ-ATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 914

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 915 QEEERQDGGQNESFKRYEEE 934


>gi|126728206|ref|ZP_01744022.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
 gi|126711171|gb|EBA10221.1| putative ATP-dependent RNA helicase protein [Sagittula stellata
           E-37]
          Length = 425

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 189/372 (50%), Gaps = 7/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++    + T +Q   +   L  +DV+  AQTG+GKT AFGL + +T++ + 
Sbjct: 4   LPPRLLTNLADLNITDPTPIQSQAIPHALNGRDVMGLAQTGTGKTAAFGLPIVTTIMRDQ 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P      L +APTRELA Q+   L    A T V + +  GG S++ +   L  G  
Sbjct: 64  TRPGPKQ-VHGLILAPTRELAKQIVDNLRAYAANTPVKIGLVTGGNSINGQINRLAKGTD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  K + +   + +VLDEAD+MLDLGF   +  I    PK+R+ ++FS
Sbjct: 123 LLVATPGRLIDLMEQKAVRLDATRFLVLDEADQMLDLGFIHALRQIARVLPKERQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A  Y  D VR+ +    +    I+     V    +   +V+ L  H  + 
Sbjct: 183 ATMPKQMAEIASAYLTDPVRIEVTPPGKPVERIEQSVHFVEQKAKTPLLVHHLDLHRTEA 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  + L +  F   ++ G  SQ +R  AL+  R+G   V +ATDVAAR
Sbjct: 243 ALVFARTKHGAEKLKRHLEDKGFAAGSIHGNKSQGQRDRALKAFREGELTVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V + +L +  +N +HR GRT RAGR G ++           + + +     
Sbjct: 303 GIDIPSVRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCSAEEMGEFKAIVKVMGRE 362

Query: 367 V------VWEPA 372
           +       WEP 
Sbjct: 363 IAVASGEAWEPV 374


>gi|46116580|ref|XP_384308.1| hypothetical protein FG04132.1 [Gibberella zeae PH-1]
 gi|91206540|sp|Q4IF76|DBP2_GIBZE RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 555

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 193/376 (51%), Gaps = 10/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 133 VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPS 192

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E++     + +      GGV    + 
Sbjct: 193 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQEEMKKFGRSSRIRNTCVYGGVPKGPQI 251

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 252 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 311

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA ++ +D ++VNI S     N + + I      +   DR   
Sbjct: 312 DRQTLMWSATWPKEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVVTEMEKRDRMIK 371

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  +     ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 372 HMEKVMENKENKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 431

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVA+RGID+ ++  V++ +  +N E+ +HR GRTGRAG  G ++ +   + Q+
Sbjct: 432 SPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQK 491

Query: 355 RAERL---FREANVSV 367
           +A  L    +EA   +
Sbjct: 492 QARDLVNVLQEAKQQI 507


>gi|297675282|ref|XP_002815615.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Pongo abelii]
          Length = 705

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 270 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 329

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 330 HMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 389

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 390 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 449

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 450 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 509

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 510 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRY 569

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 570 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 629

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 630 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 677

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 678 TRKGKSTLNTAGFSSSQAPNPVDDES 703


>gi|297675280|ref|XP_002815614.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Pongo abelii]
          Length = 725

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 290 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 349

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 350 HMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 409

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 410 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 469

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 470 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 529

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 530 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRY 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 650 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 697

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 698 TRKGKSTLNTAGFSSSQAPNPVDDES 723


>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
           leucogenys]
          Length = 455

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 122/423 (28%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEYLIGKKLPVFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|284053417|ref|ZP_06383627.1| DEAD/DEAH box helicase-like protein [Arthrospira platensis str.
           Paraca]
          Length = 465

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 194/419 (46%), Gaps = 14/419 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE++   +     L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 3   QSFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         A+   AL + PTRELA+QV   +        + V    GG S+ R+ +
Sbjct: 63  EQIDVH------AAGIQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            L+ G  +VVGTPGR+ D +    L +  L+ +VLDEADEML +GF  D+E I     S 
Sbjct: 117 RLRRGVQVVVGTPGRILDLLNRGELKLDSLRWLVLDEADEMLSMGFIQDVEKILESADSE 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++     +   +     + ++ +          +           ++     +  A+  
Sbjct: 177 HRQTAFFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEP 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     ++AI+F  T+ S +  T  L      V    G L+Q +R   L  +R  + R 
Sbjct: 237 ILELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRW 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  L  VI+ +L    ++ +HR GRTGRAGR+G ++ +I    +R+  
Sbjct: 297 IVATDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLR 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            + R    ++  +  P    I  R   R+   ++D L  + +      +V  L  ++DP
Sbjct: 357 NIERHLRQTLSIQSIPKRAEIEARYIDRLKDRVRDALAGERM-ASFLPIVSQLSEEYDP 414


>gi|260549866|ref|ZP_05824082.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
 gi|260407116|gb|EEX00593.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter sp. RUH2624]
          Length = 486

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 196/384 (51%), Gaps = 9/384 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 26  KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 85

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       +R    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 86  NNLAGQETFVPFKERMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 145

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 146 PFAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 205

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +  I  LA    KD +R+ I + +  ++DI            + 
Sbjct: 206 ELAANRKQTLMFSATFADRIIRLAACMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 265

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 266 KLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 325

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 326 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 385

Query: 353 QRRAERLFREANVSVVWEPAPSVE 376
           + +   L       +       +E
Sbjct: 386 RGKIRALEEYLEARLSVSEIEGLE 409


>gi|220681310|gb|ACL80031.1| vasa-like protein [Bombyx mori]
          Length = 468

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 195/374 (52%), Gaps = 11/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +
Sbjct: 53  NLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINMLLQD 112

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P  + ++PTREL +Q+  E       + + VAV  GG +V  +  ++ 
Sbjct: 113 PKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQGDNIA 172

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK---- 178
            G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++         
Sbjct: 173 RGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPTMVETT 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++ N++  +
Sbjct: 233 KRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRNSLKQL 292

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  + G+  + 
Sbjct: 293 IEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFKSGKHCIL 352

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----R 354
           +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G +V     +       
Sbjct: 353 VATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSDQDLALVA 412

Query: 355 RAERLFREANVSVV 368
              ++ R+A+ SV 
Sbjct: 413 DLSKILRQADQSVP 426


>gi|163838674|ref|NP_001106217.1| eukaryotic initiation factor 4A-III [Bombyx mori]
 gi|110376569|gb|ABG73410.1| eIF4AIII protein [Bombyx mori]
          Length = 405

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  
Sbjct: 33  TFDSMGLRDELLRGIYTYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSISILQ 92

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +       L ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 93  TLD------TTLRETQVLILSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 146

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 147 LDYGQHVVSGTPGRVFDMIRRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 206

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 207 QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER N ++  R G++RV I
Sbjct: 267 DTLTITQAVIFCNTKRKVDWLTQKMQEANFTVSSMHGDMPQKERDNIMKEFRSGQSRVLI 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 327 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 386

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 387 EQYYSTQIDEMPMNVADLI 405


>gi|312372785|gb|EFR20671.1| hypothetical protein AND_19720 [Anopheles darlingi]
          Length = 1061

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 125/421 (29%), Positives = 198/421 (47%), Gaps = 24/421 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             + +V+   +   GY   T +Q   +   L+ +D++  AQTGSGKT AF L +   +L 
Sbjct: 122 SGLNEVLLNNVRRSGYNKPTPIQRHAIPIVLKGRDMMGCAQTGSGKTAAFMLPMIDWILG 181

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + D       P  L +APTREL +Q+  E       TG+ V    GG +   + + L+ G
Sbjct: 182 QQDLQLHHRQPYVLVVAPTRELVIQIHDEARKFSHGTGLKVVCIYGGAASTHQLQMLRGG 241

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL----DSSPKKR 180
             I+V TPGRL D +    ++   +K VVLDEAD MLD+GF   IE ++      S  +R
Sbjct: 242 CQIMVATPGRLLDFMDRGVVSFEKVKYVVLDEADRMLDMGFLPAIEKVMGNATMPSKDQR 301

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT +P I  LA  +  + + V +        D++     V    +   +  +L 
Sbjct: 302 QTLMFSATFAPDIQQLAGVFLNNYIYVAVGIVGGACGDVEQVVYEVEKFKKRKKLEELLG 361

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A+  +VF  T+ S      +++E  F   ++ G+  Q+ER  AL+  ++GR  V IA
Sbjct: 362 EGNARGTLVFVETKRSADYLASLMSETKFPTTSIHGDRLQREREMALKDFKEGRMDVLIA 421

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RA 356
           T VAARG+D+ ++  V++ +L  N ++ +HR GRTGR G KG +                
Sbjct: 422 TSVAARGLDIKNVSHVVNYDLPKNIDDYVHRIGRTGRVGNKGRATSFYDPTADYAIAGDL 481

Query: 357 ERLFREANVSVVWEPAPSVE----------------AIRERDAQRILQDPLFLDSIQGDE 400
            ++ ++AN +V        +                 IR+ D  RI   P   +    D 
Sbjct: 482 VKILQQANQTVPDFLKHLADGGGGGGAFNGSTFGGRDIRDTDGSRIDAQPAQQEPEDADR 541

Query: 401 K 401
           K
Sbjct: 542 K 542


>gi|162149460|ref|YP_001603921.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788037|emb|CAP57641.1| putative ATP-dependent RNA helicase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 429

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 192/368 (52%), Gaps = 3/368 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL+E GY N T +Q   +   L  +D+L  AQTG+GKT AF L L  
Sbjct: 6   TFADLSLAPTLLRALAEEGYANPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLH 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R +P      L +APTREL  Q+              V    GGVS   +   
Sbjct: 66  RLAM-APRPAPKGGARVLVLAPTRELVSQIADGFTSFGRHQPPSVTTIFGGVSQFHQVNA 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V  PGRL D I     ++S L+A+VLDEAD+MLD+GF   IE I+ + PK R
Sbjct: 125 LKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDR 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT+  +I  LA++  +D  +V IA  +     I+   + V  +D+  A++++LR
Sbjct: 185 HTVLFSATMPKSIAALAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLSMLR 244

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   A+VF   +   +     + E      AL G  SQ +R  AL   R G A+V +A
Sbjct: 245 TPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRAGTAQVLVA 304

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V + +L S PE+ +HR GRTGRAGR G ++ +     +     + 
Sbjct: 305 TDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRDVE 364

Query: 361 REANVSVV 368
           RE   +++
Sbjct: 365 REIGRALI 372


>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
          Length = 503

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 134/475 (28%), Positives = 213/475 (44%), Gaps = 19/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL E+GY+N T +QE  +   L  +DVL  AQTG+GKT +F L +   L    
Sbjct: 26  LSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPMLDILSGSR 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA+QV            +  A+ IGG S+  +R  L  G  
Sbjct: 86  AR---ARMPRSLILEPTRELALQVAENFVQYGKHLKLNHALLIGGESMGEQRDVLTRGVD 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D     GL +S ++ +V+DEAD MLD+GF  DIE I+   P  R+ L FS
Sbjct: 143 VLIATPGRLIDIFERGGLLLSDVRVLVIDEADRMLDMGFIPDIERIVSLLPTMRQTLFFS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P I  LA  +  +  ++ ++      + I     LVA  D+  A+  ++R    +N
Sbjct: 203 ATMAPEIRRLADAFLSNPKQITVSRPATVATTITEGLSLVATHDKREALRRLIRTEDVQN 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+ +  V    K L  H F    L G++ Q  R   L+  + G  R+ + +DVAAR
Sbjct: 263 ALVFCNRKRDVDILCKSLTRHKFSAGMLHGDMPQSARFATLERFKAGEIRLLVCSDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + ++  + E+ +HR GRTGRAG +G ++ +     +   + +       
Sbjct: 323 GIDIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGMQGRALTLATPADRAAVDAIELLIGHP 382

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +       ++ +   +A+                 +      A               RA
Sbjct: 383 IPRLAVDGLDPVEWEEAE--------------SRGRRRGGKPAAKAAPPAKKAPKPAARA 428

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
                 E  P    S     R   R           F       + +  +++A  
Sbjct: 429 ETPPAAEEQPAPRRSREPGNRRGGREDAGPREPVVGFGDDIPAFMQI--RRRARP 481


>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
          Length = 543

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 120 ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 179

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 180 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 233

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 234 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 293

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 294 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  +L + + G+
Sbjct: 354 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 414 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 473

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 474 LILRIEEVLGKKLPKE 489


>gi|37362659|ref|NP_011932.2| Rrp3p [Saccharomyces cerevisiae S288c]
 gi|81175193|sp|P38712|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
           Full=Ribosomal RNA-processing protein 3
 gi|285809971|tpg|DAA06758.1| TPA: Rrp3p [Saccharomyces cerevisiae S288c]
          Length = 501

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 196/376 (52%), Gaps = 13/376 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 78  ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 138 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 191

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 192 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 251

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 252 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 311

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  +L + + G+
Sbjct: 312 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGK 371

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 431

Query: 355 RAERLFREANVSVVWE 370
              R+       +  E
Sbjct: 432 LILRIEEVLGKKLPKE 447


>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
          Length = 410

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/400 (29%), Positives = 214/400 (53%), Gaps = 9/400 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +   +  +   T +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL +  R
Sbjct: 4   DTLCKTCIDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLEQPQR 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+  + + L +  GV   V +GG+ +H +   L+   HI+
Sbjct: 64  Y------FALILTPTRELAFQISEQFDALGSSMGVKTVVLVGGMDMHAQGMILEKKPHII 117

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSA
Sbjct: 118 IATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 177

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ VRV ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 178 TMTKKVQKLQRASLRNPVRVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSF 237

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC T  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 238 MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 297

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+ +  +  +
Sbjct: 298 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQL 357

Query: 368 VWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVD 405
              P    E   ++ERD + I ++       +G   +  D
Sbjct: 358 PLYPTEEEEVMLLQERDMKNIEENKKSGKRKRGGNNEDDD 397


>gi|262192111|ref|ZP_06050273.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
 gi|262032022|gb|EEY50598.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae CT 5369-93]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|261212630|ref|ZP_05926914.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|260837695|gb|EEX64372.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC341]
 gi|327485418|gb|AEA79824.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae LMA3894-4]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|229514699|ref|ZP_04404160.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
 gi|229348679|gb|EEO13637.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TMA 21]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|229526174|ref|ZP_04415578.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
 gi|229336332|gb|EEO01350.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae bv. albensis
           VL426]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|229527823|ref|ZP_04417214.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
 gi|229334185|gb|EEN99670.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 12129(1)]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|221059537|ref|XP_002260414.1| helicase [Plasmodium knowlesi strain H]
 gi|193810487|emb|CAQ41681.1| helicase, putative [Plasmodium knowlesi strain H]
          Length = 528

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 182/390 (46%), Gaps = 6/390 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 179 PSLKYGDGPIVLVLAPTRELAEQIRQECVKFSVESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I++     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAI--VNILRYH 242
           AT    + +LA++  K                  I     L+   ++   +  +    + 
Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+ +    TK L       + + G+  Q ER   L   + G++ + IATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+ D++ V++ +  +  E+ +HR GRTGRAG  G S   +  +  R A  L + 
Sbjct: 419 VASRGLDIKDVKYVVNFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKI 478

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
              S    P P +E I    A    ++P +
Sbjct: 479 LRESEQPVP-PQLEKISYTSANNPRRNPYY 507


>gi|153825002|ref|ZP_01977669.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149741327|gb|EDM55361.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|153829646|ref|ZP_01982313.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
 gi|148874874|gb|EDL73009.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|153801601|ref|ZP_01956187.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|124122857|gb|EAY41600.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|254225215|ref|ZP_04918828.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622314|gb|EAZ50635.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 464

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|67468731|ref|XP_650379.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56466997|gb|EAL44993.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 542

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 129/415 (31%), Positives = 216/415 (52%), Gaps = 7/415 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL E GY  +T++Q   +   L  KD++  A+TGSGKT+AF + +   L   
Sbjct: 87  NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   +   A+ I+PTRELA+Q    LE + A +     + IGG S  +E   L+ GA
Sbjct: 145 KIHFQTRNGTGAIIISPTRELAIQTFDVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 204

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DHI   K     +LK +V+DEAD ++++GF +++  IL+  PK R+ ++
Sbjct: 205 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 264

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYH 242
           FSAT S  +  +A    K  V +N+ S++   +        VL+   DR   +   LR +
Sbjct: 265 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLIEAKDRFRLLYTFLRKN 324

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  +V  ++ +L      V AL G+L Q +R+         +  + I TD
Sbjct: 325 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 384

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P ++ +I  +L  +P++ +HR GRT RA  KG ++  +     R  E L + 
Sbjct: 385 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEIRILEYL-KG 443

Query: 363 ANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             + +     P  + A  +R+ +++++   +L++   D  K   +       + +
Sbjct: 444 EKIPLTQYEVPEKKIANIQRELEKLVEKNYYLNTEAKDGYKAYIMAYNSRSLKDV 498


>gi|330961645|gb|EGH61905.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 442

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 183/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   + P L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P ++  AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NSIRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R K +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQKAIKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
                  E
Sbjct: 369 RREEQDFE 376


>gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 449

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 206/379 (54%), Gaps = 7/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++  ++  A+ + G+   + +Q A++   L  KDV+  A+TG+GKT AF + +
Sbjct: 40  MDSFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L +  D       P A+ I PTRELA QV  E E L +     +AV  GG +++R+ 
Sbjct: 100 LEQLDSLEDCRD----PQAIVIVPTRELADQVAAEAERLASGVPTEIAVLSGGKNMNRQL 155

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG  +VVGTPGR+ DH++   L  +++  VVLDEAD MLD+GFR  IE I+   P+
Sbjct: 156 RQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPR 215

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+ SAT+ P +  LA++Y  + V ++   +      I+ R   +A  D+   + ++
Sbjct: 216 NRQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESL 275

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L+    + AI+FC T+    R  +    E+     A+ G+L Q+ER   LQ +RDG  + 
Sbjct: 276 LKREKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKF 335

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV  RGID+  +  +++ ++  + ++ +HR GRTGR GR G++   +         
Sbjct: 336 LVATDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILT 395

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +  N  ++ +     E
Sbjct: 396 SIEQRINKLLIRDKMDGFE 414


>gi|291165177|gb|ADD81193.1| vasa [Auxis rochei]
          Length = 627

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 187/380 (49%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 194 TFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 253

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 254 QLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQ 313

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R++  G ++V GTPGRL D I    + ++ L+ +VLDEAD MLD+GF  D+        
Sbjct: 314 IREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 373

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 374 MPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKR 433

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 434 EQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 493

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     + 
Sbjct: 494 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDA 553

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A   V 
Sbjct: 554 DGQLARSLITVLSKAQQEVP 573


>gi|209880596|ref|XP_002141737.1| eukaryotic translation initiation factor 4A [Cryptosporidium muris
           RN66]
 gi|209557343|gb|EEA07388.1| eukaryotic translation initiation factor 4A, putative
           [Cryptosporidium muris RN66]
          Length = 404

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 188/375 (50%), Gaps = 9/375 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N+   +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +A 
Sbjct: 30  VECFEALNLDGNLLRGIFAYGFEKPSAIQQRGVKPILDGYDTIGQAQSGTGKTATFVIAA 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +          +A   L +APTRELA Q+ +    L     +    C+GG SV  + 
Sbjct: 90  LQKIDYS------LNACQVLLLAPTRELAQQIQKVALALGDYCDLRCHACVGGTSVRDDM 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG H+VVGTPGR+ D +    L + HLK  +LDEADEML  GF+  I  I    P+
Sbjct: 144 NKLKNGVHMVVGTPGRVFDMLDKGYLRVDHLKLFILDEADEMLSRGFKLQIHDIFKKLPQ 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D  R+ +  E      I    V +     +   +V+
Sbjct: 204 DVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQYYVAVEKDEWKLATLVD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V R TK + +  F    + G++ Q++R   ++  R G +RV
Sbjct: 264 LYETLTIVQAIIYCNTRIRVDRLTKQMTDRDFTCSCMHGDMDQKDREVIMRQFRSGSSRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L  + E  +HR GR+GR GRKG++V  +  +      
Sbjct: 324 LITTDLLARGIDVQQVSLVINYDLPVSAETYIHRIGRSGRFGRKGVAVNFVTVDDIEHLR 383

Query: 358 RLFREANVSVVWEPA 372
            + R  N  +   P 
Sbjct: 384 DIERHYNTQIEEMPM 398


>gi|104782944|ref|YP_609442.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95111931|emb|CAK16656.1| putative ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           entomophila L48]
          Length = 454

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 185/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 20  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV--- 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P     AL + PTRELA Q  ++++     T +   +  GG     +   L+    
Sbjct: 77  DLSGPRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRKVPD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH+K ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 137 VLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++  +  +L     
Sbjct: 197 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLANETY 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +TRA   R    L     +   L GE  Q++R  A+   +DG ++V +ATDVA
Sbjct: 257 QKAIIFTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKDGGSKVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 317 ARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 377 QQFERRVIKEVK 388


>gi|270011364|gb|EFA07812.1| hypothetical protein TcasGA2_TC005373 [Tribolium castaneum]
          Length = 1007

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 212/447 (47%), Gaps = 11/447 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
              L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 360 LNILKKLGFEKPTPIQVQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQPPLEE 418

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+A+ + PTREL +Q+G++++       +      GG  +  +  +L+ GA I+V T
Sbjct: 419 LDGPIAIIMTPTRELCMQIGKDIKKFTKSLNLHAVCVYGGTGISEQIAELKRGAEIIVCT 478

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      GK  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 479 PGRMIDMLAANGGKVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 538

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+   +  + V +   +    D++   V++    +   ++ +L  +    +I
Sbjct: 539 FPRQMEALARRILQKPIEVQVGGRSVVCKDVEQHVVILEEDQKFLKLLELLGLYHEHGSI 598

Query: 249 V-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           + F   + +     K L +  +  ++L G + Q +R + +   + G+ ++ IAT VAARG
Sbjct: 599 IVFVDKQENADILLKELMKAAYNCLSLHGGIDQFDRDSTIIDFKSGKVKLLIATSVAARG 658

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I     R A  + R   ++ 
Sbjct: 659 LDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAYTFITPEQSRYAGDIIRAFELAS 718

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           V  P P      S ++ +E + +++     F       ++     +  +   +K A G  
Sbjct: 719 VPIPDPLRALWDSYKSKQEAEGKKVHSGGGFSGKGFKFDENEAAAVTERKKFQKAALGLA 778

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRD 448
                 L    +    S+ + +   ++
Sbjct: 779 DSDDEDLEHDIDQHIESMFATKRTVKE 805


>gi|268563240|ref|XP_002638790.1| Hypothetical protein CBG05145 [Caenorhabditis briggsae]
 gi|187035232|emb|CAP25672.1| hypothetical protein CBG_05145 [Caenorhabditis briggsae AF16]
          Length = 400

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 28  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 88  SLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 142 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + ++++ 
Sbjct: 202 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q++R   ++  R G  RV I
Sbjct: 262 DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+  R    +
Sbjct: 322 STDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDI 381

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 382 EQYYSTQIDEMPMNIADII 400


>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
 gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans]
          Length = 525

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 195/374 (52%), Gaps = 13/374 (3%)

Query: 4   FENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           FE+  ++     + EA     Y   T +Q   + P L  KD++  AQTGSGKT AF + +
Sbjct: 104 FESFSELNLVPELIEACENLKYSKPTPIQAEAIPPALEGKDIIGLAQTGSGKTAAFAIPI 163

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L  +   +       A  +APTRELA Q+    + L    GV     +GG+++  + 
Sbjct: 164 LNQLWHDQQPY------YACVLAPTRELAQQIKETFDSLGGAMGVRTTCIVGGMNMIDQA 217

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 218 RDLMRKPHIIIATPGRLMDHLENTKGFSMRKLKFLVMDEADRLLDMEFGPVLDRILKIIP 277

Query: 178 KKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++
Sbjct: 278 TQGRTTYLFSATMTSKIDKLQRASLTNPVKCAVSTKYQTVDTLIQTLMVVPGGLKNTFLI 337

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     K AIVF  T+A+  R   +     F   AL G+L+Q +R+ AL + + GR  
Sbjct: 338 YLLNEFLGKTAIVFTRTKANAERIATLCNLLEFSATALHGDLNQNQRTGALDLFKAGRRS 397

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q      
Sbjct: 398 ILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELI 457

Query: 357 ERLFREANVSVVWE 370
            R+       +  E
Sbjct: 458 LRIEDVLGRKLPKE 471


>gi|307208568|gb|EFN85902.1| Eukaryotic initiation factor 4A-III [Harpegnathos saltator]
          Length = 403

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  
Sbjct: 31  TFDSMGLRDELLRGIYAYGFEKPSAIQQRSIKPIMKGRDVIAQAQSGTGKTATFSIAILQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +            L ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 91  SLDTQ------VRETQVLVLSPTRELATQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D I+ + L    +K +VLDE+DEML+ GF++ I  +    P   
Sbjct: 145 LDYGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEMLNKGFKEQIYDVYRYLPPAT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 205 QVVLVSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER N ++  R G +RV I
Sbjct: 265 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGDMPQKERDNIMKEFRSGASRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+S+  +  +  R    +
Sbjct: 325 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVSINFVKTDDIRILRDI 384

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 385 EQYYSTQIDEMPMNVADLI 403


>gi|58268226|ref|XP_571269.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|74684726|sp|Q5KFM6|DBP2_CRYNE RecName: Full=ATP-dependent RNA helicase DBP2-A
 gi|57227504|gb|AAW43962.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 540

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  
Sbjct: 109 ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 169 MVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 228 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    +  LA ++  D ++VNI S +   + ++     +    D+ + +++
Sbjct: 288 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLS 347

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L     +N   ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 348 HLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 407

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 408 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 467

Query: 356 AER---LFREANVSVVWE 370
           A     + RE+   +  E
Sbjct: 468 ARELVQILRESKADIPPE 485


>gi|58268224|ref|XP_571268.1| p68-like protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57227503|gb|AAW43961.1| p68-like protein, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 527

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 190/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   +S+Q       L  +D++  A+TGSGKT++F L  
Sbjct: 96  ITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPA 155

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 156 MVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQI 214

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I V TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+     
Sbjct: 215 RDLQRGVEICVATPGRLIDMLETGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIRP 274

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT    +  LA ++  D ++VNI S +   + ++     +    D+ + +++
Sbjct: 275 DRQTLLFSATWPKEVQRLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLS 334

Query: 238 ILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L     +N   ++F +T+      TK L    +  +A+ G+  Q ER   L   + GR+
Sbjct: 335 HLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRS 394

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D+  VI+ +  +N E+ +HR GRTGRAGRKG S      +  + 
Sbjct: 395 PIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKA 454

Query: 356 AER---LFREANVSVVWE 370
           A     + RE+   +  E
Sbjct: 455 ARELVQILRESKADIPPE 472


>gi|50420221|ref|XP_458643.1| DEHA2D04048p [Debaryomyces hansenii CBS767]
 gi|74602737|sp|Q6BT27|FAL1_DEBHA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49654310|emb|CAG86782.1| DEHA2D04048p [Debaryomyces hansenii]
          Length = 399

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + +   G+   +++Q   +   +  KD +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA Q+   ++ L     V    CIGG  V  + + 
Sbjct: 87  VID------TKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE++  GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+S  +  +   +  D V++ +  ++     I    +       + + + ++ 
Sbjct: 201 QVVVVSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+  T  + +  F VVA+ G++ Q ER + +   R G +RV I
Sbjct: 261 DSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG+++ ++ +        +
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTKEDVDELRDI 380

Query: 360 FREANVSVVWEPA 372
            R   + +   P 
Sbjct: 381 ERFYRIRIKEMPV 393


>gi|225450401|ref|XP_002278318.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 155/571 (27%), Positives = 261/571 (45%), Gaps = 41/571 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  ++
Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++ +        P  L +APTRELA QV +E++        V           +    L 
Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYITQQ--NALS 240

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGR+ D I+G  L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+ 
Sbjct: 241 RGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQS 300

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  LA+ Y  + + ++      E        Y     A S R      I 
Sbjct: 301 MLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAEGIKLYAIPTTATSKRTILSDLIT 360

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V +
Sbjct: 361 VYAKGGKTIVFTQTKR-DADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 419

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  + L
Sbjct: 420 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSL 479

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R+      +   P++E + E  A++++     L+ +  +  +       K   EK    
Sbjct: 480 ERDVGCKFEFISPPAIEEVLESSAEQVV---ATLNGVHPESVEFFTPTAQKLIEEK---- 532

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                         +  +S  S    FR   S              G S   LS      
Sbjct: 533 ------GTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLS------ 580

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGV-DLLRRTV----KLDK 529
             AR +   L          +G I +  D        ++  +   +LL + +     + K
Sbjct: 581 --ARSVTGFLSDVYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISK 638

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGA 560
             +L  L  + P    Y     + ++S+ G+
Sbjct: 639 ITKLPALQDDGPAGDYYGRFSNRDRSSRGGS 669


>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
 gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
          Length = 462

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 146/462 (31%), Positives = 223/462 (48%), Gaps = 27/462 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     EAL+  GY ++T VQ   +   L+ KDV+  A+TGSGKT AFG+ L  T+   N
Sbjct: 11  LSPAQLEALAALGYEHMTPVQAQSIPLLLQGKDVIARARTGSGKTAAFGIGLLQTI---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNGA 125
            RF       AL + PTRELA QV  EL  L      + +    GG     +   L++GA
Sbjct: 68  PRF---FGVQALVLCPTRELAEQVSGELRRLASRMANIKLVTLCGGKPFGPQVGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF D +E I+  +P+ R+ L+F
Sbjct: 125 HIVVGTPGRIQDHLGRDTLKLDGLKVLVLDEADRMLDMGFADSMEAIVAKTPRSRQTLLF 184

Query: 186 SATISPAITTLA-KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    I  ++    ++ ++         +   I+     V   +R   ++ +  ++  
Sbjct: 185 SATYPENIRKMSASIQRQPSMVTVDEEVAHKEEVIEQLFYEVQKHERHTTLLALFEHYTP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            NA+VFC+T+        VL ++  +  A+ G+L Q+ER   L    +    V +ATDVA
Sbjct: 245 ANAVVFCNTKKQCDEVASVLRDYDIEARAIHGDLDQRERDQVLVQFANNSCPVLVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ EL  +PE  +HR GRTGRAG  G+++ ++  +   R  ++    +
Sbjct: 305 ARGLDIKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHRISKIEEFQS 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV-----------DVLLAKHDP 413
                +  PS++    R+    L  P+    +    K+ +           D  L     
Sbjct: 365 QPCACDTLPSLD----RNPNYELMAPMVTIQLDAGRKQKLRPGDILGALTGDAGLEGSQI 420

Query: 414 EKIAA----GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
            KIA      F+ I RA L           + GR       R
Sbjct: 421 GKIAIFDQWSFVAIERAALRQAMNYLANGKIKGRSIRARKIR 462



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               + +         L  G KQK     ++  L   +G+    IG I +    +FV + 
Sbjct: 376 DRNPNYELMAPMVTIQLDAGRKQKLRPGDILGALTGDAGLEGSQIGKIAIFDQWSFVAIE 435

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
                 LR+ +      ++K         R
Sbjct: 436 RAA---LRQAMNYLANGKIKGRSIRARKIR 462


>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
 gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
          Length = 603

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A++E GY   T +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 59  MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 118

Query: 60  STLLAEND-----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             L A                 AL + PTRELA QV   +        +   V  GGV +
Sbjct: 119 HRLSAAQPNKVHTPHGMRYPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI 178

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L+ G  IVV TPGRL DH+  + +++SH++ +VLDEAD MLD+GF  DI  IL+
Sbjct: 179 NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN 238

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ L+FSAT S  I  LA         + +A  N     ++ R   V    +   
Sbjct: 239 ILPPKRQNLLFSATFSDDIRALADRLLDQPALIEVARRNTTAETVEQRIYPVDRERKREL 298

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++R +     +VF  T+   +R  + L       +A+ G  SQ  R+ AL   + G 
Sbjct: 299 LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGISALAIHGNKSQSARTRALSEFKAGT 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATD+AARGID+  L  V++ +L + PE+ +HR GRTGRAG +G ++ ++  +   
Sbjct: 359 LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG 418

Query: 355 RAERLFREANVSVV------WEPAPSV 375
               + R     +       +EP P++
Sbjct: 419 LLRDIERLIKRELPRTVLEGFEPDPTI 445


>gi|311745694|ref|ZP_07719479.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
 gi|126575136|gb|EAZ79486.1| putative ATP-dependent RNA helicase [Algoriphagus sp. PR1]
          Length = 453

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 118/411 (28%), Positives = 192/411 (46%), Gaps = 9/411 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + + EA+ E GY + T++QE  +   L   DVL  AQTG+GKT A+ L +   
Sbjct: 8   FEAFKLNRQLLEAIGEAGYAHPTAIQEKAIPLALAGHDVLGIAQTGTGKTAAYVLPILMK 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +     +++      AL +APTREL +Q+    + L   T + V    GG+    +   +
Sbjct: 68  V-----KYAQGLHARALILAPTRELVMQIEEVTKQLATYTDLRVVSLYGGLGPKTQIETI 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  I++ TPGR  D  R   L    LK +VLDEAD+M+D+GF   I  IL+  P KR+
Sbjct: 123 QAGVDIIISTPGRFLDIYRKNMLYTKALKTMVLDEADKMMDMGFMPQIRSILEVIPVKRQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILR 240
            L+FSAT    I  LA  + +   RV +  +      ID     +  +  + N +  +L 
Sbjct: 183 NLLFSATFGTRIEKLAHEFLEFPERVEVTPQATTAETIDQVMYFVPNIKTKINLLAKLLE 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCI 299
                 AI+F  +R +       L    F  V  +     Q  R N+++  + G  R+ +
Sbjct: 243 EEAVNRAIIFTRSRKNAEEVFHFLENRHFGEVRVIHANKGQNTRINSMEDFKGGEVRILV 302

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+  +  VI+ ++    E+ +HR GRTGRA  +G ++  +        E++
Sbjct: 303 ATDVASRGLDITMVSHVINFDIPLIYEDYVHRIGRTGRAEHEGKAISFVNPAEAYHFEKI 362

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                + VV +P P    +     +        LD ++  +         +
Sbjct: 363 EEIIRMKVVEKPIPKGVDVTNTPFEEKQAYERELDRLKQRDNPDYKGAFHE 413


>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
 gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 198/419 (47%), Gaps = 10/419 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +    GGVS            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELARHTTLDITTITGGVSYINHAEIFSTNQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE +   +  +++ L+F
Sbjct: 128 DMVVATPGRLLQYIKEENFDCRSVETLILDEADRMLDMGFAKDIETVAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+         +   +      A   R+      +    A S +    +         
Sbjct: 188 SATLESDAVHDFADRLLEDPVDVSAEPPRRERKKIQQWYYRADSLKHKTALLCHLLRQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F   R  V      L +   Q   L GEL Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VTKSVIFVRKRERVHELVTWLHQAGIQACFLEGELVQAKRNEAIKRMLDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE- 362
           AARG+D+PD+  V + ++  + +  LHR GRT RAGRKG ++ +I  + Q    ++ R  
Sbjct: 308 AARGLDIPDISHVFNFDMPRSADVYLHRIGRTARAGRKGTAISLIEAHDQLLLGKVSRYV 367

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEKI 416
                  VV E  P  +A   ++  +  +  L   + +   ++KK     +   D + +
Sbjct: 368 QEPMKSRVVDELRPETKAPSLKNKGKPSKKVLAKRAQKKLDEQKKKGKTKVRHRDSKNV 426


>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 501

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 214/468 (45%), Gaps = 14/468 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I  AL   G  +   +QE  +   L   D++  A+TG+GKT+AFG+ + 
Sbjct: 16  TTFADLGVAPSIVTALDAEGITHPFPIQEMAIPIALTGTDMIGQARTGTGKTLAFGIPIL 75

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++ + D    +  P   P AL ++PTRELA QVG +L          V    GGV   
Sbjct: 76  QKVVLKTDEGFDQLDPKDKPQALVMSPTRELAQQVGSDLAIAGRDRHARVLTIYGGVGYD 135

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D +    L++SH++  VLDEADEMLDLGF  D++ +LD 
Sbjct: 136 DQLDALKKGVDVVVGTPGRLLDLVHRGNLDLSHVRIAVLDEADEMLDLGFLPDVQALLDR 195

Query: 176 SPKKRRMLMFSATIS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ +MFSAT+         ++  Q   +R                       D+  
Sbjct: 196 TPASRQTMMFSATMPAVIMSLARSRLNQPVNIRAEGRDAQATVPQTTQFIYQAHELDKPE 255

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  +L+  G +  +VF  T+ +  R    L +  F+  +L G+L+Q +R   ++  R+ 
Sbjct: 256 MIGKMLQSEGMRKMMVFTRTKRAAQRLADDLRDRGFEAASLHGDLNQSQREKTMKRFRND 315

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + +V +ATDVAARGID+ D+  V++ E+  +PE  +HR GRTGRAG +G++V ++     
Sbjct: 316 KIQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGHEGVAVTLVDWQDV 375

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            R + + +  ++     P P +EA      Q  L+D       +G           +H  
Sbjct: 376 TRWKVINKALDL-----PFPEIEATFSTTPQ-FLEDLHIAPDTKGRLADAKPRDEGEHRG 429

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           ++           G               +D         K  GG   
Sbjct: 430 DERRDRGKGHGGKGHHDRGRDRHEGHGKKKDGEHRHDAKDKDKGGDAK 477


>gi|255066127|ref|ZP_05317982.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
 gi|255049672|gb|EET45136.1| ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC 29256]
          Length = 468

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     I  AL+E+GY N T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNPFASLGLGSEIVSALTEQGYENPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYATSSTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT +P I  LAK++      V +A++N   ++++   + V    + N + 
Sbjct: 181 PKPRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSANVEQHIIAVDALKKRNLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 357 ERLFREANVSVVWEPAPSVE 376
           E +       +  E     E
Sbjct: 361 EAIKELTGNDLAVERIEGFE 380


>gi|254286694|ref|ZP_04961649.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423278|gb|EDN15224.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 464

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|125577677|gb|EAZ18899.1| hypothetical protein OsJ_34439 [Oryza sativa Japonica Group]
          Length = 541

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 20/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   + S ++  
Sbjct: 79  DLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRG 138

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                P         PLAL ++PTREL++Q+  E      +TGV V V  GG  ++++ R
Sbjct: 139 PPAQRPQRGGMRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLR 198

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   +  I++     
Sbjct: 199 DLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMP 258

Query: 180 RR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                  ++FSAT    I  +A ++ ++ + + +         I  R   V  +D+ + +
Sbjct: 259 PPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHL 318

Query: 236 VNILRYHG-------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +++L               +VF  T+         L  + F   ++ G+ +QQER  AL+
Sbjct: 319 MDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALR 378

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++    
Sbjct: 379 SFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFF 438

Query: 349 PQN---MQRRAERLFREANVSVV 368
            +N   M R    L +E+N  V 
Sbjct: 439 NENNSSMARSLAELMQESNQEVP 461


>gi|260809351|ref|XP_002599469.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
 gi|229284748|gb|EEN55481.1| hypothetical protein BRAFLDRAFT_122755 [Branchiostoma floridae]
          Length = 623

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 179/383 (46%), Gaps = 8/383 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           + + P  + E +    +   T +Q       L+ +D++  AQTGSGKT+A+ L     + 
Sbjct: 114 YASFPDYVMEEIRNAQFEKPTPIQAQGWPVALQGRDIVGIAQTGSGKTLAYMLPAIVHIN 173

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P+ L + PTRELA QV +E       + +      GG     + RDL+ 
Sbjct: 174 HQ-PYLERGDGPICLVLTPTRELAQQVQQEASKFGRSSRIKNTCVFGGSPKGPQIRDLER 232

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  + + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ L
Sbjct: 233 GVEVCIATPGRLIDFLEAGKTNMRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTL 292

Query: 184 MFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           M+SAT    +  LA+ + K+  ++N      S N     I           + + ++  +
Sbjct: 293 MYSATWPKEVRQLAEEFLKEYTQINIGALQLSANHNILQIVDVVQEHEKDHKLSRLLEEI 352

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V   T+ +    +  + + G+ SQ ER   L   R G+A + +
Sbjct: 353 MGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNQFRSGKAPILV 412

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +      +  ++ + L
Sbjct: 413 ATDVASRGLDVSDIKFVINFDYPNSAEDYVHRIGRTARSDRTGTAYTFFTPSNLKQTKDL 472

Query: 360 ---FREANVSVVWEPAPSVEAIR 379
               +EA   V       V+A R
Sbjct: 473 VSVLQEAQQQVNPRLLEMVQAAR 495


>gi|209544711|ref|YP_002276940.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532388|gb|ACI52325.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 427

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 193/368 (52%), Gaps = 3/368 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL+E GY + T +Q   +   L  +D+L  AQTG+GKT AF L L  
Sbjct: 4   TFADLSLAPTLLRALAEEGYASPTPIQAQSIPMLLEGRDLLGMAQTGTGKTAAFALPLLH 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R +P      L +APTREL  Q+    E         V    GGVS   +   
Sbjct: 64  RLAM-APRPAPKGGARVLVLAPTRELVSQIADGFESFGRHQPPSVTTIFGGVSQVHQVNA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V  PGRL D I     ++S L+A+VLDEAD+MLD+GF   IE I+ + PK R
Sbjct: 123 LKAGVDIIVAAPGRLLDLIDQGLCDLSQLEALVLDEADQMLDMGFARPIERIVATLPKDR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             ++FSAT+  +I TLA++  +D  +V IA  +     I+   + V  +D+  A++ +LR
Sbjct: 183 HTVLFSATMPKSIATLAESLLRDPAKVEIAPPSTTVDRIEQSVMFVDAADKKAALLAMLR 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   A+VF   +   +     + E      AL G  SQ +R  AL   R G A+V +A
Sbjct: 243 TPGIGQAVVFTLQKNIANEVCAFITEAGITAEALHGNKSQGQRERALDAFRSGTAQVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V + +L S PE+ +HR GRTGRAGR G ++ +     +     + 
Sbjct: 303 TDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRNGFAITLCDAEQRAWLRDVE 362

Query: 361 REANVSVV 368
           RE   +++
Sbjct: 363 REIGRALI 370


>gi|330792086|ref|XP_003284121.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
 gi|325085935|gb|EGC39333.1| hypothetical protein DICPUDRAFT_27074 [Dictyostelium purpureum]
          Length = 593

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/358 (31%), Positives = 173/358 (48%), Gaps = 4/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+ N T +Q       L+ +D++  A+TGSGKT+AF L     + A+ 
Sbjct: 226 FPNYLMKEIMAAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQ- 284

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L +APTRELA+Q+  +       + +      GG S H +   L+ G  
Sbjct: 285 PTLKPGDGPIVLVLAPTRELALQIQEQARKFGGTSQISNVCVYGGASKHSQVMMLKKGVE 344

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL      R+ LMFS
Sbjct: 345 IVIATPGRLIDILTSGDTNLRRVTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMFS 404

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--- 243
           AT    + +LA ++  D ++V+I S     +    + V V         +          
Sbjct: 405 ATWPKEVQSLANDFLSDHIQVHIGSSELTANHNVNQIVEVCSEYEKKERLFKFLEANVSK 464

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  TR  V    + L    F+ + + G  SQ ER   L   ++G   + IATD+
Sbjct: 465 DDKVIIFAETRKGVDELHRSLQSAGFKSIGIHGNKSQPERDFVLSQFKNGIFPIMIATDL 524

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           A+RG+D+ D++ V++ +  +  E  +HR GRT RAG  G S+  + +   R A  L +
Sbjct: 525 ASRGLDVKDIKFVVNYDFPNTIETYVHRIGRTARAGATGTSISFLTRENARLANDLIK 582


>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
 gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
           DSM 18205]
          Length = 568

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 189/373 (50%), Gaps = 8/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL +  +   T VQE  +   L   DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   DLNDNVLDALYDMRFDTCTPVQEKCIPEILEGHDVLGVAQTGTGKTAAYLLPVLSKLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P  A   + ++PTRELA Q+ + ++        V +V + G +         R L
Sbjct: 65  -DGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQELRSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+ TPGRL  HI    +++S +   +LDEAD MLD+GF +DI+ I    PK  +
Sbjct: 124 RMGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIKTIASKLPKTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPEKIEELAKTLLKNPVEI-KLAVSKPAEKIKQEAYVCYETQKMTIIKDIFKA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF  ++  V +    L +      A+  +L Q ER + +   + G+  V +AT
Sbjct: 243 GDLKRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDDVMFKFKSGQYDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+E+VI+ ++  + E+ +HR GRT RA R G ++  + +  Q   +++ +
Sbjct: 303 DIVARGIDIDDIEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQYWFQQIEK 362

Query: 362 EANVSVVWEPAPS 374
                V   P P 
Sbjct: 363 FLEKVVDKMPLPE 375


>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
 gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 214/418 (51%), Gaps = 15/418 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++     + EA  + G+   + +Q   +   L+ KDV+  A+TGSGKT AF L + 
Sbjct: 14  TTFKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPIL 73

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +  
Sbjct: 74  QALLDNPQR------LFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQAL 127

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      ++  LK +V+DEAD +L++ F  +++ +L   PK
Sbjct: 128 MLAKKPHIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPK 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  +  L +   +  V+V +A++ +    +    + +    +D  +V +
Sbjct: 188 ERRTFLFSATMTKKVQKLQRASLQAPVKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYV 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + +VFC T  +V R T +L       V L G++SQ +R  AL   +     + 
Sbjct: 248 LNELAGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSIL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G SV  + Q      +R
Sbjct: 308 VATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQR 367

Query: 359 LFREANVSVVWEPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +       +     P+VE     + ER  +      + L  I   +K+  +  L + +
Sbjct: 368 IEHLIAKKLPQY--PTVEEEVMLLMERVTEAQRYARMELREINDKKKRAPEDDLDEQE 423


>gi|254229148|ref|ZP_04922567.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262395499|ref|YP_003287352.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938233|gb|EDN57072.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262339093|gb|ACY52887.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 419

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 207/420 (49%), Gaps = 19/420 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E LS    V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T
Sbjct: 5   FADLGIEQKLIETLSNLNIVTPTPVQEKSIPHVLEGKNLLAAAQTGTGKTAAFGLPIIQT 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L
Sbjct: 65  VQQKKLNGT----PQALVLVPTRELAQQVFDNLNQYSAQTELRIVCVYGGTSIGVQKRKL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P +++
Sbjct: 121 EEGADILIATPGRLLDHLFNGNVNISKTSMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    I T+A    +  V V ++  N     +      V    +   +  ++  
Sbjct: 181 ILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 241 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +     +  
Sbjct: 301 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLHAIEN 360

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +  +  E     E             P  ++ ++ ++           +  K+ A   
Sbjct: 361 LLDQRLPQEWLAGFE-------------PTLIEEVEPEKNGSGRRRSRSSEKRKLKAKLA 407


>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
 gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
           Nb-231]
          Length = 429

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 195/386 (50%), Gaps = 5/386 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   I  A+   GY   T +Q   +   +  +D+L +AQTG+GKT AF L +  
Sbjct: 2   TFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   R     AP AL + PTRELA QV   +        +      GGV ++ +   
Sbjct: 62  RLSAVPTRH---RAPRALVLTPTRELAAQVRESVRSYGRHLPLRSTAVFGGVGINPQISA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VV TPGRL DH++ + + +S ++  VLDEAD MLD+GF  DI  ++ + P+KR
Sbjct: 119 LRSGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA     D   V+ A  N     I ++   VA S +   + +++ 
Sbjct: 179 QNLLFSATFSGEIRKLADQILHDPASVDTAPRNSVAELITHKVHPVAQSRKRALLAHLIG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R    L        A+    SQ  R+ ALQ  + GR RV +A
Sbjct: 239 NGKWSQVLVFTRTKHGANRLATQLDRDGLNATAIHSSKSQSARTKALQDFKRGRVRVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ ELS+  E+ +HR GRTGRAG +G +V ++  + ++    + 
Sbjct: 299 TDIAARGLDIEALPHVVNYELSNIAEDYVHRIGRTGRAGSQGQAVSLVSADERKHLANIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI 386
           R     +        E +   +A  +
Sbjct: 359 RLLGRRLPCTVIEGFEPVAANEAPSL 384


>gi|148255365|ref|YP_001239950.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
 gi|146407538|gb|ABQ36044.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
          Length = 478

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 189/374 (50%), Gaps = 8/374 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV    +   A   + VA+ IGGVS   +   
Sbjct: 62  ILEKGRAR---ARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDTK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L F+AT+ P I  + + +  +  +V ++        +    V           V    
Sbjct: 179 QTLFFTATMPPEIRRVTETFLHNPQKVEVSRPATTAVTVTQLQVPGGREAHQKREVLRKL 238

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              AK   NAI+FC+ +  V+   K L +H F V AL G++ Q  R  AL   R G   +
Sbjct: 239 LREAKDLKNAIIFCNRKRDVAILHKSLQKHGFSVCALHGDMDQSARMAALDQFRKGELPL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  + ++ +HR GRTGRAGR G ++ ++    Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPADQKSIT 358

Query: 358 RLFREANVSVVWEP 371
            + +    S+    
Sbjct: 359 AIEKLIGQSIPKAE 372


>gi|328865226|gb|EGG13612.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 414

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 175/371 (47%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + +   + E+GYV  + +QE  +   L  KD++  A+ G+GKT +F +     
Sbjct: 42  FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGKDIMARAKNGTGKTASFLIPALEK 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D          L + PTRELA+Q  +  + L     V V    GG S+  +   L
Sbjct: 102 TDPTKDYI------QVLILVPTRELALQTSQVCKELGKYMNVKVMATTGGTSLKDDIMRL 155

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D  +    N+S+   +++DEAD++L   F+  IE +++  P +R+
Sbjct: 156 YETVHILVATPGRVLDLAQKNVANLSNTHTIIMDEADKLLSQDFQPLIEQLINFLPPQRQ 215

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    + T   NY + A  +N+  E             V    + + +  +   
Sbjct: 216 ILLFSATFPLTVKTFKDNYLQKAYEINLMEELTLKGV-TQYYAFVDERQKIHCLNTLFSK 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 275 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQAHRNRVFHDFRNGHCRNLVSS 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+ D+ +VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 335 DLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIEQ 394

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 395 ELGTEIKPIPP 405


>gi|224370329|ref|YP_002604493.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693046|gb|ACN16329.1| predicted ATP-dependent RNA helicase [Desulfobacterium
           autotrophicum HRM2]
          Length = 411

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 200/395 (50%), Gaps = 17/395 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  +I + + + L+  G+V  T +Q   +   L+ +DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FEKYHISEDLKKNLAALGFVRPTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + +             L + PTRELA Q+G   + L   T V      GGV   R+ 
Sbjct: 60  IDRIHSYKTS-KRTRGIRCLVMVPTRELAEQIGGVFDTLSRHTKVKTFALYGGVEQDRQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ+G  I++ TPGR+ D I    +N+ ++  +VLDEAD MLDLGF  DI  +     K
Sbjct: 119 KRLQDGIDILIATPGRMFDLISQGHINLDNVNTLVLDEADHMLDLGFITDIHHVKQKLVK 178

Query: 179 KRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + + L FSATI+  I        +  A+R+ I+ ++    ++ +  + V + D+   + N
Sbjct: 179 RHQTLFFSATINQKIKKLAFSQVKTTAIRIQISPDDPVSKNVSHFVMFVEMDDKRFFLEN 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            ++ + +   IVF  TR    R  K +     +   + GE  Q  RS  +Q  ++    +
Sbjct: 239 FIKENPSAKIIVFVRTRVRAERVAKAMERVGIETSTIHGEKDQTLRSLVMQRFKNNEISI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV+ARGID+P+++ VI+ +L    EN +HR GRTGR  +KG ++    +N + R +
Sbjct: 299 LIATDVSARGIDIPNVDFVINYDLPDQAENYVHRVGRTGRGVKKGSAISYCSRNERERLD 358

Query: 358 RLFREANVSV------------VWEPAPSVEAIRE 380
            +    N  V            V EP  S E +R+
Sbjct: 359 EIQTFINKKVEVVHVTKNDYAMVVEPEQSFEDVRD 393


>gi|254476796|ref|ZP_05090182.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
 gi|214031039|gb|EEB71874.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
          Length = 447

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 200/385 (51%), Gaps = 9/385 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +P+ +   + E G+   T +Q   +   L  KDVL  AQTG+GKT AFG+ L
Sbjct: 1   MTEFSTMGLPEKLLSRIDEMGFKEPTPIQARAIPHALNGKDVLGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + ++    + + A     L +APTRELA Q+   L+ L   T +   + +GGVS++ + 
Sbjct: 61  IAQMMQYGRKPA-AKTVRGLVLAPTRELANQIAATLKGLTEGTPLKTGLVVGGVSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P+
Sbjct: 120 SRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A +Y    VR+ ++   +    I      +A +++ + +  +
Sbjct: 180 ERQTMLFSATMPKQMNEIANSYLNAPVRIEVSPPGKAADKITQSVHFIAKAEKLSLLKEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  +  +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ 
Sbjct: 240 LAEHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALAAFKSGEVKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + 
Sbjct: 300 VATDVAARGLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMDELKA 359

Query: 359 LFREANVSV------VWEPAPSVEA 377
           + +   +++       WE  P   A
Sbjct: 360 IQKTMKITIPVASGRPWEAMPDPTA 384


>gi|254457027|ref|ZP_05070455.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
 gi|207085819|gb|EDZ63103.1| dead/deah box helicase [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 196/389 (50%), Gaps = 8/389 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +  A+ E GY + T +Q+  +   L + D+  +AQTG+GKT AF L +  
Sbjct: 2   SFEKLGLIKPLLGAIKELGYEHPTLIQKRAIPLVLAKSDIFATAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N          A+ ++PTREL++Q+  +++       +  A+ +GG  +  ++R 
Sbjct: 62  KL--RNTTADENRTIRAVILSPTRELSIQIHEDVKNYSKHMSLTSAILVGGKDIEAQQRM 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+GTPGR  + +     +I++++  V+DEAD MLD+GF  +I  I    P++ 
Sbjct: 120 LKTGIDIVIGTPGRFMELMDKGL-DITNIEVFVVDEADRMLDMGFSKEIRRIHLQLPRRH 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  +  L+K        +  A +N     I+  A +V    +   +  ++ 
Sbjct: 179 QTLLFSATYSDKVRKLSKQILTKPAFIETAKKNTTVDTINQVAYMVDTDRKAELLAYLIG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+ S       L +   +   + G+ +Q  R   L   ++G+ RV +A
Sbjct: 239 SRNFPQVLVFTKTKVSADALFIELKKDGLKCGIIHGDKTQANRQKTLTQFKEGQIRVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ +L  VI+ EL S PE+ +HR GRTGRAGR G ++ ++    +   + + 
Sbjct: 299 TDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGRDGQAISLLDVYDKYNIKDVE 358

Query: 361 REANVSVVWEPAPSVE---AIRERDAQRI 386
           R     +  E     E    IR +D   +
Sbjct: 359 RLIGQKIPQEVVEGFEPDPTIRRKDEDEV 387


>gi|71280656|ref|YP_266818.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146396|gb|AAZ26869.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 420

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 196/376 (52%), Gaps = 5/376 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +      + +A++E  Y   T +Q+  +   L + DV+  AQTG+GKT AF L +  
Sbjct: 6   TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L++            AL + PTRELA QV +        T V + +  GGVS  ++  +
Sbjct: 66  QLISVQP---CKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISE 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++ TPGRL D +R + +++S+++ +V DEAD MLD+GF+++I+ I    PK +
Sbjct: 123 LKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT +  I  ++KN   +   V I  +N+   D++     V    +      ++ 
Sbjct: 183 QTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIG 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VF  T+       K + +   + +A+ G+ SQ  R  AL   ++G+ R  IA
Sbjct: 243 SRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI+ EL  N E+ +HR GRT RAG  G++V ++    +     + 
Sbjct: 303 TDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLLTAIE 362

Query: 361 REANVSVVWEPAPSVE 376
              ++ ++ +  P  E
Sbjct: 363 ELLDIQLLQQWLPGYE 378


>gi|166014135|gb|ABY77970.1| vasa [Thunnus orientalis]
          Length = 644

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 188/380 (49%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 209 TFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 268

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 269 QLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQ 328

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R+++ G ++V GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+        
Sbjct: 329 IREIERGCNVVCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 388

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 389 MPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKR 448

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 449 EQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 508

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     + 
Sbjct: 509 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDA 568

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A   V 
Sbjct: 569 DGQLARSLVTVLSKAQQEVP 588


>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
 gi|108879362|gb|EAT43587.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 638

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 189/378 (50%), Gaps = 11/378 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +   + + + +  Y   T +Q+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 214 IKSFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPM 273

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +TLL +N    P + P  + IAPTRELA+Q+  E       T + V V  GG +   + 
Sbjct: 274 INTLLNDNADMVPGN-PFVVIIAPTRELALQIFNEARKFALGTVLKVCVAYGGTATRHQM 332

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            ++QNG HI+V TPGRL D +  + +    +K VVLDEAD MLD+GF   +E +++    
Sbjct: 333 DNIQNGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRMLDMGFMPSVEKMMNHETM 392

Query: 179 KRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + +      MFSAT    I  LA  +  + + V +       +D++     V+   +   
Sbjct: 393 RPKEERQTLMFSATFPAEIQELAGQFLNNYIFVAVGIVGGASTDVEQTIHQVSKFQKRKK 452

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  +L        +VF  T+ +      +L+E  F   ++ G+  Q+ER  AL+  + G+
Sbjct: 453 LEELLEADDPTGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGK 512

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IAT VAARG+D+ ++  V++ +L  + ++ +HR GRTGR G KG +          
Sbjct: 513 MFILIATSVAARGLDIKNVAHVVNYDLPKSIDDYVHRIGRTGRVGNKGKATSFYDMEADA 572

Query: 355 ----RAERLFREANVSVV 368
                  ++  +A   V 
Sbjct: 573 AIAPDLVKILTQAGQQVP 590


>gi|114682553|ref|XP_514711.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 isoform 6 [Pan
           troglodytes]
          Length = 827

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/478 (23%), Positives = 204/478 (42%), Gaps = 43/478 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 224 NLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYK 283

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL +QV      L     +   + +GG+ V  +   L+   
Sbjct: 284 PRQ---APVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAP 340

Query: 126 HIVVGTPGRLCDHIRGKGLNIS-----------------------------HLKAVVLDE 156
            I++ TPGRL DH+                                     HL       
Sbjct: 341 DILIATPGRLIDHLHNCPSFHLSSIEVLILDEADSPPVGTACPHAPTLWLLHLPFPQPGA 400

Query: 157 ADEML---DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
                   D  F + ++ I+      R+ ++FSAT++  +  LA    K+ VR+ + S  
Sbjct: 401 ISCPFRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNT 460

Query: 214 RQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
                +    + +  +    R+  +  +L      + ++F  T+    R   +L     Q
Sbjct: 461 DVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGLQ 520

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           V  L G LSQ +R  AL+  +D +  + +ATDVAARG+D+  ++ VI+  + +  ++ +H
Sbjct: 521 VGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVH 580

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD-AQRILQD 389
           R GRT RAGR G SV ++ ++ ++  + + + A   V     P    ++ RD  +++ +D
Sbjct: 581 RVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKD 640

Query: 390 PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
              +  ++ +EK+M       +     A   L   +  +    E +       R + +
Sbjct: 641 VYAVLQLEAEEKEMQQSEAQINT----AKRLLEKGKEAVVQEPERSWFQTKEERKKEK 694


>gi|50054446|ref|NP_001001910.1| probable ATP-dependent RNA helicase DDX4 [Sus scrofa]
 gi|51315697|sp|Q6GWX0|DDX4_PIG RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein
 gi|48727699|gb|AAT46129.1| VASA-like protein [Sus scrofa]
          Length = 722

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 190/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 287 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 346

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 347 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 406

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 407 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 466

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 467 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKR 526

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 527 EKLLEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 586

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 587 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 646

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 647 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 694

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 695 TRKGKSTLNTAGFSSSQAPNPVDDES 720


>gi|16611843|gb|AAL27386.1|AF426171_17 RhlE [Yersinia pestis]
          Length = 421

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|156546663|ref|XP_001603634.1| PREDICTED: similar to ENSANGP00000016791 [Nasonia vitripennis]
          Length = 1035

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 190/366 (51%), Gaps = 5/366 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +    + 
Sbjct: 382 LDVLRKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIL-DQPPLAD 440

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+AL + PTREL +Q+G++ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 441 GDGPIALIMTPTRELCMQIGKDSKKFTKSLGLSHVCVYGGTGISEQIAELKRGAEIIVCT 500

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ ++FSAT
Sbjct: 501 PGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRPDRQTVLFSAT 560

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NA 247
               +  LA+      V V +   +    D++   V++    +   ++ IL +   K +A
Sbjct: 561 FPRQMEALARRILTKPVEVQVGGRSVVCKDVEQHVVVLDDDLKFRKLLEILGHFQDKGSA 620

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F   + +     K L +     ++L G + Q +R + +   + GR ++ +AT VAARG
Sbjct: 621 IIFVDKQENADTLLKDLMKASHSCMSLHGGIDQCDRDSTIMDFKAGRVKLLVATSVAARG 680

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  + +R +  + R   ++ 
Sbjct: 681 LDVKSLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITPDQERYSGDIVRAFELAG 740

Query: 368 VWEPAP 373
           V  P P
Sbjct: 741 VPVPEP 746


>gi|297579675|ref|ZP_06941602.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297535321|gb|EFH74155.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 464

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|170091668|ref|XP_001877056.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648549|gb|EDR12792.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 396

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 197/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++   + +   +    +   +++Q+  + P  + +DV+  AQ+G+GKT  F +++
Sbjct: 22  VSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPITQGRDVIAQAQSGTGKTATFSISI 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++              AL ++PTRELA Q+   +  L     V    CIGG S+  + 
Sbjct: 82  LQSIDVT------VRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGGTSIGEDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GF+D I  +    P 
Sbjct: 136 RKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNKGFKDQIYDVYRYLPP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 196 ATQVILLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V   T+ +    F V ++ GE+ Q+ER   +   R G +RV
Sbjct: 256 LYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGEMVQKERDAIMAEFRGGTSRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R   
Sbjct: 316 LITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTVDDVRILR 375

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P  + E I
Sbjct: 376 DIEQFYSTQIDEMPVNAAELI 396


>gi|212710051|ref|ZP_03318179.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
 gi|212687258|gb|EEB46786.1| hypothetical protein PROVALCAL_01104 [Providencia alcalifaciens DSM
           30120]
          Length = 468

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 210/390 (53%), Gaps = 11/390 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F ++   P      L+E G++ +T +QEA L   L  KDV   A+TGSGKT AFGL 
Sbjct: 12  VTSFADLNALPAEQLSNLNELGFITMTPIQEAALPAILAGKDVRAQAKTGSGKTAAFGLG 71

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A+N          +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 72  LLQRIDAKNFN------TQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSV 125

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   + AHI+V TPGRL DH+  + + + HL+ +VLDEAD MLD+GF DDI+ ++  +
Sbjct: 126 QRDSLVHAAHILVATPGRLLDHLHKETVQLDHLQTLVLDEADRMLDMGFADDIDAVISFT 185

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   +I  +++  QK+ + + I S N           +     + + + 
Sbjct: 186 PEDRQTLLFSATWPDSIAAISQRIQKNPLTIEINSVNELPDVEQQFYEVARHD-KIDLLQ 244

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +    V+ L G++ Q++R   L    +G +R
Sbjct: 245 KLLSREQPASCVVFCNTKKDCQAVYDALMDSNQSVLVLHGDMEQRDRDQTLVRFANGSSR 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+  LE+VI+ ELS +PE  +HR GRT RAG+ G+++ +      +RA
Sbjct: 305 VLVATDVASRGLDIKALEMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRA 364

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             L    N+ + W P P+   I   +A+ +
Sbjct: 365 NVLEEMLNIKLNWLPVPTGLRITPLEAEMV 394



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 7/135 (5%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LC+PEE    +++      + +     
Sbjct: 322 EMVINFELSWDPEVHVHRIGRTARAGKSGLAISLCSPEEAQRANVLEEMLNIKLNWLPVP 381

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G              L  G K K     ++  L    G+    IG I + P   +V + 
Sbjct: 382 TGLRITPLEAEMVTLCLDGGKKAKIRPGDILGALTGEVGLQGDDIGKIAIHPMHAYVAIK 441

Query: 515 ADGVDLLRRTVKLDK 529
               +   + ++  K
Sbjct: 442 KSVANQAWKQLQQGK 456


>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 799

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 195/383 (50%), Gaps = 5/383 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++        A+ E GY   T +Q   +      +DVL  AQTG+GKT +F L +  
Sbjct: 2   TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMID 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +   +   A  P +L +APTRELA QV            + +A+ IGG S++ +++ 
Sbjct: 62  ILASGKAK---ARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKV 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D      + +  +K +V+DEAD MLD+GF  D+E I+   PK R
Sbjct: 119 LDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   I  LA  +  +   V I    +    ++   ++V  S++  A+  +LR
Sbjct: 179 QTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                NA +FC+ +  V    K L+ H F ++AL G++ Q  R+  L+  +    ++ + 
Sbjct: 239 RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVC 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+ ++  V + ++ ++PE+ +HR GRTGRAGR G +  +      +    + 
Sbjct: 299 SDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDA 383
                ++  +P   +  +   D 
Sbjct: 359 NLLGKTIPPDPQLELSDVAVEDV 381


>gi|78223770|ref|YP_385517.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
 gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
          Length = 451

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 190/369 (51%), Gaps = 7/369 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   +   ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKEF-NLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL IAPTRELA Q+      L  +T +      GGV+V+ + + 
Sbjct: 62  RLAQGERGR-----VRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DH+    +++SHL+ +VLDEAD+M D+GF  D+  IL   P KR
Sbjct: 117 LKAGAEIVVACPGRLLDHMAQGTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+   +D V V + +     +   +    V    +   ++ +LR
Sbjct: 177 QTLLFSATMPIDIRVLAQEILRDPVTVQVGTVAPAVTV-THALYPVEQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + + +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G +  ++          + 
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMVRTIE 355

Query: 361 REANVSVVW 369
           R+ N S+  
Sbjct: 356 RKLNTSLER 364


>gi|167540072|ref|XP_001741531.1| ATP-dependent RNA helicase has1 [Entamoeba dispar SAW760]
 gi|165893947|gb|EDR22062.1| ATP-dependent RNA helicase has1, putative [Entamoeba dispar SAW760]
          Length = 518

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 216/415 (52%), Gaps = 7/415 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL E GY  +T++Q   +   L  KD++  A+TGSGKT+AF + +   L   
Sbjct: 63  NLSEEIQKALEEAGYTKMTTIQARSIPLLLMGKDIMAKARTGSGKTLAFLIPIVEIL--N 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   +   A+ I+PTRELA+Q    LE + A +     + IGG S  +E   L+ GA
Sbjct: 121 KIHFQTRNGTGAIIISPTRELAIQTFEVLEKILAHSERTRTLIIGGSSKKKEEEALKKGA 180

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DHI   K     +LK +V+DEAD ++++GF +++  IL+  PK R+ ++
Sbjct: 181 SIVVATPGRLLDHIINTKCFIYRNLKCLVIDEADRIMEVGFEEEMRQILNRLPKNRQTML 240

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYH 242
           FSAT S  +  +A    K  V +N+ S++   +        VLV   DR   +   LR +
Sbjct: 241 FSATQSEKVDDIANISLKQPVVINVESQSTISTSSKLEQGYVLVEAKDRFRLLYTFLRKN 300

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  +V  ++ +L      V AL G+L Q +R+         +  + I TD
Sbjct: 301 KNKKTIVFMSSCKAVKFYSDLLNYIDIPVKALHGQLDQDKRTKVFFEFCKAKEAILITTD 360

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P ++ +I  +L  +P++ +HR GRT RA  KG ++  +     R  E L + 
Sbjct: 361 IAARGLDIPAVDWIIQVDLPDSPKDYIHRVGRTARADTKGRALLFVQPCEVRILEYL-KG 419

Query: 363 ANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             + +     P  + A  +R+ +++++   +L++   D  K   +       + +
Sbjct: 420 EKIPLTQYEVPEKKIANIQRELEKLVEKNYYLNTEAKDGYKAYIMAYNSRSLKDV 474


>gi|32477297|ref|NP_870291.1| ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH 1]
 gi|32447848|emb|CAD77366.1| putative ATP-dependent RNA helicase rhlE [Rhodopirellula baltica SH
           1]
          Length = 485

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 190/380 (50%), Gaps = 12/380 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++     + + L + GY   T +Q   +   L   DVL +AQTG+GKT AF L +
Sbjct: 1   MNKFEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPI 60

Query: 59  ASTLL-AENDRFSPASAPLA---------LAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
              +   + +R  P+              L ++PTREL+ Q+         KT +   V 
Sbjct: 61  LQIMWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVI 120

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GGV+ + + R+LQ+G   +V TPGRL D +    +++  ++ +VLDEAD MLD+GF  D
Sbjct: 121 FGGVNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPD 180

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++ IL   P+ R+ L+FSAT+   I  LA     D V + IA +      I+     VA 
Sbjct: 181 VKRILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQ 240

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +D+   + + +      + +VF  T+       + L +   +  A+ G  +Q  R   L 
Sbjct: 241 ADKPRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLN 300

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++    V +ATDVAARGID+  ++ VI+ +  + PE  +HR GRTGRAGR+G +V   
Sbjct: 301 KFKNDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFC 360

Query: 349 PQNMQRRAERLFREANVSVV 368
             +  +    + RE  + + 
Sbjct: 361 GGHETKFFIAIEREIKLQIP 380


>gi|66802312|ref|XP_629938.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
 gi|74896805|sp|Q54E49|DDX6_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|60463332|gb|EAL61523.1| hypothetical protein DDB_G0291804 [Dictyostelium discoideum AX4]
          Length = 423

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 178/371 (47%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + +   + E+GYV  + +QE  +   L  +D++  A+ G+GKT +F +     
Sbjct: 51  FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEK 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D          L + PTRELA+Q  +  + L     V V    GG S+  +   L
Sbjct: 111 TDPTKDVI------QVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+V TPGR+ D  +    N+S+   +++DEAD++L   F+  +E +++  P++R+
Sbjct: 165 YNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    + +  ++Y + A  +N+  E             V    + + +  +   
Sbjct: 225 ILLFSATFPVTVKSFKEHYLQQAFEINLMEELTLKGV-TQYYAFVEERQKIHCLNTLFSK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 284 LQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+ D+ +VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 344 DLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQ 403

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 404 ELGTEIKPIPP 414


>gi|332821351|ref|XP_003310755.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 3 [Pan
           troglodytes]
          Length = 704

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 269 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 328

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 329 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 388

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++    
Sbjct: 389 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPG 448

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 449 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 508

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 509 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 568

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 569 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 628

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 629 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 676

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 677 TRKGKSTLNTAGFSSSQAPNPVDDES 702


>gi|332821349|ref|XP_003310754.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 2 [Pan
           troglodytes]
          Length = 575

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 140 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 199

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 200 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 259

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++    
Sbjct: 260 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPG 319

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 320 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 379

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 380 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 439

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 440 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 499

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 500 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 547

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 548 TRKGKSTLNTAGFSSSQAPNPVDDES 573


>gi|332821347|ref|XP_003310753.1| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 1 [Pan
           troglodytes]
          Length = 690

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 255 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 314

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 315 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 374

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++    
Sbjct: 375 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPG 434

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 435 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 494

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 495 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 554

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 555 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 614

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 615 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 662

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 663 TRKGKSTLNTAGFSSSQAPNPVDDES 688


>gi|291406391|ref|XP_002719530.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 3
           [Oryctolagus cuniculus]
          Length = 614

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|255036249|ref|YP_003086870.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949005|gb|ACT93705.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 134/420 (31%), Positives = 214/420 (50%), Gaps = 13/420 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ + + +ALSE GY   T +Q  + +  +  KDV   AQTG+GKT A+ L  
Sbjct: 1   MMTFEDLNLTKPLLKALSEAGYTTPTPIQHKVFSVMMSGKDVCGIAQTGTGKTFAYLLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    DR      P  L + PTREL VQV  E+  L A T + V    GG ++  + 
Sbjct: 61  LRQIEYAKDRL-----PQLLVLVPTRELVVQVVEEVRKLAAYTTLQVVGVYGGGNIKVQM 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L  GA +VV TPGRL D      L    +K +V+DE DEML+LGFR  ++ ILD  P+
Sbjct: 116 AELHEGADVVVATPGRLFDLAMNGSLKTKSVKKLVIDEVDEMLNLGFRTQLKNILDLLPQ 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSATI+  +  L K Y  D VR+  A       +I+ +A  V        +++ 
Sbjct: 176 RRQNLLFSATITQEVEALMKAYFNDPVRIEAAPVGTPLDNIEQQAYYVPNFYTKVNLLDK 235

Query: 239 LRYHGAKN--AIVFCSTRASVSRFTKVLA-EHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L     +    ++F +T+    +    L   +L ++  +     Q  R N ++    G  
Sbjct: 236 LLEQHEEMNKVLIFVATKKLADQLYGQLELGYLDRIGVIHSNKDQNHRFNTIRQFHAGNY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ IATD+ ARG+D+ ++  V + ++   PEN +HR GRTGRA RKG+++  I +  +  
Sbjct: 296 RLLIATDIIARGLDVAEVSHVFNFDIPEIPENYIHRIGRTGRADRKGIAISFISEREKPF 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVDVLLAKHDPE 414
            E++    +  +   P P  E ++  +     ++P +F+ +I+    K  DV  A H+ +
Sbjct: 356 QEQIEALMDFEIPVLPLP--EDLKISEVLTPDEEPKIFMKNIELKRPKREDVGAAFHEKK 413


>gi|332821345|ref|XP_517757.3| PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform 4 [Pan
           troglodytes]
          Length = 724

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/446 (26%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 289 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 348

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 349 HMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 408

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF   ++ ++    
Sbjct: 409 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPKMKKLISCPG 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 469 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 528

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 529 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRF 588

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 589 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 648

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 649 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 696

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 697 TRKGKSTLNTAGFSSSQAPNPVDDES 722


>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
 gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
           norvegicus]
          Length = 455

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/423 (29%), Positives = 215/423 (50%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIV+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK         D  
Sbjct: 378 IEHLIGKKLPVFPTQDEEVMMLTERVSEAQRFARMELREH---GEKKKRKREDPGDDDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|126340121|ref|XP_001371236.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 542

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/425 (29%), Positives = 219/425 (51%), Gaps = 16/425 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ +A  + G+   T +Q   +   L  +D++  A+TGSGKT AF L + 
Sbjct: 108 KTFKDLGVTDVLCDACDQLGWKTPTKIQIEAIPMALDGRDIIGLAETGSGKTGAFALPIL 167

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    RF       AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 168 NALLDTPQRF------FALVLTPTRELAFQISEQFEALGSSIGVECAVIVGGIDSMSQSL 221

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 222 ALAKKPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKLIPR 281

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V I
Sbjct: 282 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDSYLVYI 341

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + +VFCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 342 LNELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 401

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R
Sbjct: 402 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQR 461

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  +     QG+++K        +D  
Sbjct: 462 IEHLIGKKLPAFPTQEEEVMLLTERVAEAQRFARMEMRE---QGEKRKRFREDKDDNDDT 518

Query: 415 KIAAG 419
           + A G
Sbjct: 519 ENATG 523


>gi|21464402|gb|AAM52004.1| RE27528p [Drosophila melanogaster]
          Length = 507

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 214/422 (50%), Gaps = 9/422 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 68  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +         V A++ER A+      L L  ++              D E       R+
Sbjct: 422 QLTLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHKRGGDTHDDSENFTGARKRM 481

Query: 424 HR 425
            +
Sbjct: 482 KQ 483


>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
 gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
          Length = 442

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 200/378 (52%), Gaps = 8/378 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I   +S  GY   T +Q   +   L+ +D+L+SAQTGSGKT AF L + 
Sbjct: 3   NTFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRER 118
             L AE  +   +  P AL + PTRELA QV     ++      +     +GG +  ++ 
Sbjct: 63  QQLAAEPTK---SKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQKQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  IVV TPGRL DH+R   L++S ++ +VLDEAD MLD+GF DD+  I+   P+
Sbjct: 120 RALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRMLDMGFSDDMHAIIKQCPQ 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ +M SAT    +  +A  +  +A ++ IA E     +I         + ++  +  +
Sbjct: 180 NRQTIMSSATWDGNVGKIAAGFTHNAEKIIIAPETSHIEEIS--YFTDDQAHKNAVLDRL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        IVF +T+++       L E+ FQ   L G+L QQ+R+  ++  R+G+  V 
Sbjct: 238 LADEAVTQCIVFTATKSTTETVAHHLYENGFQAQFLHGDLQQQKRNRIIERFRNGQINVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+P +  VI+ +L    E+ +HR GR+GRAGR G+++ ++    +     
Sbjct: 298 VATDIAARGIDIPAISHVINYDLPRQSEDYVHRIGRSGRAGRSGVALNLVSLTDRAAMAH 357

Query: 359 LFREANVSVVWEPAPSVE 376
           + R    ++  +    +E
Sbjct: 358 IERYLKRAIKTDVLEGLE 375


>gi|197119152|ref|YP_002139579.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
 gi|197088512|gb|ACH39783.1| ATP-dependent RNA helicase RhlB [Geobacter bemidjiensis Bem]
          Length = 482

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 197/373 (52%), Gaps = 4/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  IP  + + + E G+   T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELQIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL++  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179

Query: 180 RRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +     FSAT++  +  LA  +     +V++  E      ++     V+  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   +DG   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++    ++     E
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIE 359

Query: 358 RLFREANVSVVWE 370
            +       +  E
Sbjct: 360 PIEDFIKQKIPTE 372


>gi|148686462|gb|EDL18409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Mus musculus]
          Length = 715

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 10/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 275 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILA 334

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG      
Sbjct: 335 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHS 394

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 395 VRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPG 454

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                   +   + V +        D+    + V    + 
Sbjct: 455 MPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKR 514

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 515 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 574

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     + 
Sbjct: 575 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 634

Query: 353 QRRA 356
               
Sbjct: 635 DNHL 638


>gi|225007636|ref|NP_001139357.1| probable ATP-dependent RNA helicase DDX4 isoform 1 [Mus musculus]
 gi|74223562|dbj|BAE21618.1| unnamed protein product [Mus musculus]
 gi|187950715|gb|AAI37602.1| Ddx4 protein [Mus musculus]
 gi|219519729|gb|AAI44761.1| Ddx4 protein [Mus musculus]
          Length = 728

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 10/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 288 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILA 347

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG      
Sbjct: 348 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHS 407

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 408 VRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPG 467

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                   +   + V +        D+    + V    + 
Sbjct: 468 MPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKR 527

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 528 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 587

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     + 
Sbjct: 588 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 647

Query: 353 QRRA 356
               
Sbjct: 648 DNHL 651


>gi|33859536|ref|NP_034159.1| probable ATP-dependent RNA helicase DDX4 isoform 2 [Mus musculus]
 gi|20141439|sp|Q61496|DDX4_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Mvh; AltName:
           Full=Vasa homolog
 gi|12852922|dbj|BAB29578.1| unnamed protein product [Mus musculus]
          Length = 702

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 10/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 262 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILA 321

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG      
Sbjct: 322 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHS 381

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 382 VRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPG 441

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                   +   + V +        D+    + V    + 
Sbjct: 442 MPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKR 501

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 502 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 561

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     + 
Sbjct: 562 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDS 621

Query: 353 QRRA 356
               
Sbjct: 622 DNHL 625


>gi|54308937|ref|YP_129957.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46913367|emb|CAG20155.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 422

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 12/383 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   + + ++E G+   T +QE  +   L   D++  AQTG+GKT AFGL +   LL   
Sbjct: 8   LNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQ 67

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +        A  AL + PTRELA QV   +      T + VAV  GG S+  + + 
Sbjct: 68  QSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKA 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++ TPGRL DH     +++S ++ +VLDEAD MLD+GF  DI+ I+   P+KR
Sbjct: 128 LKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  +  LA +   D   + +  EN     +      V    +   +  ++ 
Sbjct: 188 QTLLFSATFSNQVKKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIG 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  +A
Sbjct: 248 SRNWNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++  + +     + 
Sbjct: 308 TDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIE 367

Query: 361 REANVSVV------WEPAPSVEA 377
              +  +       +EP P+++A
Sbjct: 368 ELLDTRLPQEWLEGYEPDPTIKA 390


>gi|67613960|ref|XP_667337.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis TU502]
 gi|126643927|ref|XP_001388148.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|10720033|sp|O02494|IF4A_CRYPV RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|2150025|gb|AAB58726.1| translation initiation factor [Cryptosporidium parvum]
 gi|2155304|gb|AAB58799.1| translation initiation factor [Cryptosporidium parvum]
 gi|54658467|gb|EAL37111.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           hominis]
 gi|126117225|gb|EAZ51325.1| eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Cryptosporidium
           parvum Iowa II]
 gi|323508859|dbj|BAJ77322.1| cgd1_880 [Cryptosporidium parvum]
 gi|323510549|dbj|BAJ78168.1| cgd1_880 [Cryptosporidium parvum]
          Length = 405

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 191/375 (50%), Gaps = 9/375 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N+   +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +A 
Sbjct: 30  VECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAA 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +          +A   L +APTRELA Q+ +    L     +    C+GG SV  + 
Sbjct: 90  LQKIDYS------LNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDM 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G H+VVGTPGR+ D +    L + +LK  +LDEADEML  GF+  I  I    P+
Sbjct: 144 NKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQ 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D  R+ +  E      I    V +     + + +++
Sbjct: 204 DVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLID 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V + TK + E  F   ++ G++ Q++R   ++  R G +RV
Sbjct: 264 LYETLTIVQAIIYCNTRRRVDQLTKQMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L  +PE  +HR GR+GR G+KG+S+  +  +      
Sbjct: 324 LITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLR 383

Query: 358 RLFREANVSVVWEPA 372
            + R  N  +   P 
Sbjct: 384 DIERHYNTQIEEMPM 398


>gi|255731175|ref|XP_002550512.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
 gi|240132469|gb|EER32027.1| eukaryotic initiation factor 4A-12 [Candida tropicalis MYA-3404]
          Length = 399

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  +   + + +   G+   +++Q   +   +  KD +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       + +    AL ++PTRELA Q+   ++ L     +    CIGG +V  + + 
Sbjct: 87  VID------TKSKECQALILSPTRELATQIQNVVKHLGDYMNIHTHACIGGKNVGDDVKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L   ++K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVLDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPAV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT+S  +  +   +  D V++ +  +    S I    V       + + + ++ 
Sbjct: 201 QVVVVSATLSREVLEMTSKFTTDPVKILVKQDEISLSGIKQYYVQCEQEDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+  T  + +  F VV++ G++ Q ER + +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVVSMHGDMKQDERESIMNDFRTGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG ++ +I ++     + L
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVSTLKEL 380

Query: 360 FREANVSVVWEPA 372
            R  +  +   P 
Sbjct: 381 ERHYSTKIREMPM 393


>gi|156547575|ref|XP_001602897.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 445

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 57  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYSIPVLEQ 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D         AL I PTRELA+Q  + L  L     + V V  GG ++  +   +
Sbjct: 117 VDPKKDVI------QALIIVPTRELALQTSQILIELAKHMDIKVMVTTGGTNLRDDIMRI 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +     N+ H + +VLDEAD++L   F+  ++ ++   P +R+
Sbjct: 171 YQKVQVIIATPGRILDLMDKNVANMDHCRILVLDEADKLLSQDFKGMLDHVISRLPHERQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 231 ILLYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC+T   V    K + +  +    +  +++Q  R+      R G  R  + +
Sbjct: 290 LQINQSIIFCNTTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCS 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 350 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQ 409

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 410 ELGTEI--KPIPKV 421


>gi|315126209|ref|YP_004068212.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315014723|gb|ADT68061.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 465

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 190/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+ E+GY   T +Q   +   +  +DV+ +AQTG+GKT  F L L   L   +
Sbjct: 8   LSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLIERL--SS 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + ++   AL + PTRELA+QV   +E     + V   V  GGV ++ + + L+ G  
Sbjct: 66  GTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    ++ +VLDEAD MLD+GF  DI+ ++   P+KR+ LMFS
Sbjct: 126 ILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQNLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V +++A++N     +      V  + +   + +++R +  + 
Sbjct: 186 ATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRSNNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L        A+ G  SQ  R  AL+  + G  RV +ATD+ AR
Sbjct: 246 VLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVATDIVAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++  +  +       + R     
Sbjct: 306 GLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIERFIGEL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IPRAEEEGFE 375


>gi|75076134|sp|Q4R5S7|DDX4_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|67970411|dbj|BAE01548.1| unnamed protein product [Macaca fascicularis]
          Length = 725

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 189/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 290 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 349

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +      F     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 350 HMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 409

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 410 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 469

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 470 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 529

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 530 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 590 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 649

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                            +P   V    ++D    L++  F   I G        + A  D
Sbjct: 650 DNHL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVD 697

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 698 TRKGKSSLNTAGFSSSQAPNPVDDES 723


>gi|238784236|ref|ZP_04628248.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
 gi|238714803|gb|EEQ06803.1| ATP-dependent RNA helicase rhlE [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  EPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     + V V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|311109370|ref|YP_003982223.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
 gi|310764059|gb|ADP19508.1| DEAD/DEAH box helicase family protein [Achromobacter xylosoxidans
           A8]
          Length = 590

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 146/584 (25%), Positives = 235/584 (40%), Gaps = 31/584 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     +  A+ E G+   T VQ + +   L   D++VS+QTGSGKT AF L    
Sbjct: 2   SFENLGLAPALLSAVQEAGFSTPTPVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +       +       L + PTRELA+QV         K      A  +GG+    + +
Sbjct: 62  RI--AQMPANKGVGVQVLVLTPTRELALQVTDATATYGRKLADLRTATVVGGMPYGAQLK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH+    + ++ +  +VLDEAD MLD+GF +DIE I+   P+ 
Sbjct: 120 ALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVGRLPED 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           R+ L+FSAT+   I  LA    +D  R+ +A    +H++I    +     S +   + ++
Sbjct: 180 RQTLLFSATLDGTIAKLAARMMRDPQRIEMAGAKEKHTNITQSLLYADDASHKMQLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF ST+         LA+  F   AL G+++Q++R+  L  ++ G+ R+ 
Sbjct: 240 LRDAALDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R
Sbjct: 300 VATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRSGLAFTLATHSERHKVRR 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +      S+  E    +E  R                  G   +      +   P     
Sbjct: 360 IEHYIGQSITPEVIAGLEPKRTPRPSTGGGGGKPYGKRPGGGYQGNREGRSFGGPR---- 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
           G  +    G     +  P       +R   D  A           +         G  Q 
Sbjct: 416 GEFKPREGGYQGNRDSAPREGGYQGNRPFGDRPARSFSDRPSFGDRPQRE-----GGYQG 470

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLLRRTVKLDKGIQLK 534
                  P   R  G      G    +P      ++ +               + G +  
Sbjct: 471 NRPFGDRP--QREGGFRG---GDRDSRPSFGDRPSYGDRPQRDARPFSERGPREGGFRGG 525

Query: 535 YLGGE-----KPDFRGYKSSGFKSKNSQ--DGATKRFKRFKGAS 571
                     +P F    S G + +      G  +    F+G  
Sbjct: 526 DRDSRPSFSDRPSFGDRPSFGDRPQREGGFRGGDRPEGGFRGKP 569


>gi|74695852|sp|Q75EW9|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 487

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 195/368 (52%), Gaps = 9/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA     +   T +Q   + P L+ KD++  AQTGSGKT AF + + + L  +
Sbjct: 72  DLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHD 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    
Sbjct: 132 QQPY------YACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKP 185

Query: 126 HIVVGTPGRLCDH--IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           HI++ TPGRL DH  +  +G  +   + +V+DEAD +L++ F   ++ IL + P K R  
Sbjct: 186 HIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLNMKFGPVLDRILKNIPTKVRTT 245

Query: 184 M-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L   
Sbjct: 246 YLFSATMTSKIDKLQRASLTNTVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEF 305

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATD
Sbjct: 306 IGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATD 365

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+P ++LVI+ ++  + ++ +HR GRT RAGR G SV ++ Q       R+   
Sbjct: 366 VAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEEV 425

Query: 363 ANVSVVWE 370
               +  E
Sbjct: 426 LGKKLPKE 433


>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 503

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 226/476 (47%), Gaps = 25/476 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +   I  A+   GY   T +QE  +   L   DV+ +AQTG+GKT  +GL L
Sbjct: 27  MSSFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPL 86

Query: 59  ASTLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +L + N   SPA  P+ AL +APTRELA QV   L    A T +   V  GGV +  
Sbjct: 87  IARILPKANTSMSPARHPVRALILAPTRELADQVSDNLVKYCADTPLRAGVVYGGVDIRP 146

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  I+  TPGRL DH++ + +N+S ++ VVLDEAD MLD+GF  DI  IL   
Sbjct: 147 QADMLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLDEADRMLDMGFLPDISRILQLL 206

Query: 177 PKKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           P+ R+ L+FSAT SP I        + +   + +A EN     +      V   ++ + +
Sbjct: 207 PQHRQSLLFSATFSPEIKKLAKSFLKDNPTVIEVARENSTAETVTQELFAVNDREKTDVL 266

Query: 236 VNILRYHGAK-----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +++L+  G +       +VF + + +  R  + L        A+ G+ +Q+ER  AL+  
Sbjct: 267 IDMLKTRGPEGTPLTQVLVFVNAKITCRRLARTLERVGINADAIHGDKTQEERQVALEGF 326

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++G   V +ATDVAARG+D+ +L  VI+ ++  + E+ +HR GRTGRAG KG++  +   
Sbjct: 327 KNGAIHVLVATDVAARGLDIKELPFVINYDVPYSAEDYVHRIGRTGRAGAKGVATMLATP 386

Query: 351 NMQRRAERLF---REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
             +R  E +    ++    +   P P          +R    P   D  +    + VD  
Sbjct: 387 EDKRLVEAIEALTKQTFKPISISPMP--------RTRRGSGAPYRRDD-RSSYAERVDTP 437

Query: 408 LAKHDPEKIAAGFL---RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
             +    + A  ++   + HR  +     +      S   +        +      
Sbjct: 438 EDERLARERARAYMPPAQRHRDPIFDMPYLENPRATSSAQKADAPVFLERQEKRRP 493


>gi|315182662|gb|ADT89575.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 406

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 1/361 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E LS  G    T +Q   +   L  KDVL  AQTG+GKT AFGL L    +    +  
Sbjct: 1   MVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLIQRFVDHPLQRE 60

Query: 71  PASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           P S    AL + PTRELA QV   L+     + + +    GG S++ ++++L+ GA I++
Sbjct: 61  PNSKDIRALVLVPTRELAQQVFDNLQSYAQGSELKIVTAYGGTSMNVQKQNLRGGADILI 120

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH   K L + + +A+VLDEAD MLD+GF  DI+ +L     +R+ L FSAT 
Sbjct: 121 ATPGRLLDHAHVKTLYLGNAEALVLDEADRMLDMGFMPDIQRVLRKMQHERQTLFFSATF 180

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I   A    ++ V V +   N     ++     V    +   +  ++     +  +V
Sbjct: 181 DSKIKAFAHRMMQNPVEVQVTPSNSTADTVEQMVYPVDKKRKRELLAYLIGSRNWQQVLV 240

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L     +  +++G+ SQ  R  AL   + G+ R  IATDVAARGID
Sbjct: 241 FTRTKQGSDALAQELKLDGIKAASINGDKSQGARQKALDDFKSGKVRALIATDVAARGID 300

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  LE V++ ++    E+ +HR GRTGRAG+ G +V ++  + Q   E + R  +  +  
Sbjct: 301 IAQLEQVVNFDMPFKAEDYVHRIGRTGRAGKAGFAVSLMSHDEQPLLEAIERLLDKRLPQ 360

Query: 370 E 370
           E
Sbjct: 361 E 361


>gi|146340507|ref|YP_001205555.1| putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
 gi|146193313|emb|CAL77329.1| Putative ATP-dependent RNA helicase [Bradyrhizobium sp. ORS278]
          Length = 476

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 192/379 (50%), Gaps = 13/379 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSDKVLAAVAATGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV    +   A   + VA+ IGGVS   +   
Sbjct: 62  ILEKGRAR---ARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L F+AT+ P I  +   +  +  +V ++        +    V           V    
Sbjct: 179 QTLFFTATMPPEIRRITDAFLHNPQKVEVSKPATTAVTVTQLQVPSGREAHQKREVLRRL 238

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              AK   NAI+FC+ +  V+   K L +H F V AL G++ Q  R  AL   R G   +
Sbjct: 239 LREAKDLKNAIIFCNRKRDVAIVHKSLQKHGFSVGALHGDMDQSARMAALDQFRKGELPL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  + ++ +HR GRTGRAGR G ++ ++    Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHSDDYVHRIGRTGRAGRTGTAISIVSPPDQKSVA 358

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +    S+     P++E
Sbjct: 359 AIEKLIGQSI-----PTIE 372


>gi|238798926|ref|ZP_04642391.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
 gi|238717236|gb|EEQ09087.1| ATP-dependent RNA helicase rhlE [Yersinia mollaretii ATCC 43969]
          Length = 451

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 191/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLNQNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  EPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     + V V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPVSVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALEGYEPDPSIKA 384


>gi|148228442|ref|NP_001082679.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus laevis]
 gi|51704021|gb|AAH80992.1| LOC398649 protein [Xenopus laevis]
          Length = 610

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 187/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 88  NFPQYVLDVLLDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQ 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 148 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKTSRLKSTCIYGGAPKGPQIRDLERGV 206

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 207 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 266

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++NI +     + +I     +   S++D+ ++ ++    A
Sbjct: 267 SATWPKEVRQLAEDFLRDYSQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEEIMA 326

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQQER   L   R G+A + IAT
Sbjct: 327 EKENKTIIFVETKRRCDELTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIAT 386

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +            R   +
Sbjct: 387 DVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELVK 446

Query: 359 LFREANVSVVWE 370
           +  EAN ++  +
Sbjct: 447 VLEEANQTINPK 458


>gi|87310130|ref|ZP_01092262.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
 gi|87287120|gb|EAQ79022.1| ATP-dependent RNA helicase [Blastopirellula marina DSM 3645]
          Length = 428

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 198/367 (53%), Gaps = 4/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL    Y+  + +Q AI+   L  +DVL  A+TG+GKT AFG+ +   L    
Sbjct: 11  LSVEMKAALEAARYIQPSPIQAAIIPLALEGRDVLGQARTGTGKTAAFGIPIIERLEHGP 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  +    P AL + PTRELAVQV  E+  L     + V    GG  +  +   L+   H
Sbjct: 71  NSRN----PQALILTPTRELAVQVRDEIAKLTHGQRINVVAVYGGKPLRSQMEKLKRAPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +  + L +  L+ VVLDEAD MLD+GFR DIE IL   P++R+ L+ S
Sbjct: 127 IVVGTPGRVIDLMTRRALQLEMLRTVVLDEADRMLDIGFRPDIEKILRRCPEERQTLLLS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA+ Y ++  +V+ +  N     I+ R   V  S + + +V +L+    + 
Sbjct: 187 ATVPPTIEKLAQRYMRNPEKVDFSPTNISAETIEQRYFTVDHSKKFDMLVELLKREQPQK 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVFC T+    R T+ L++    V  + G++ Q  R+ AL   +  + RV +ATDV  R
Sbjct: 247 AIVFCRTKRGTERITQRLSKKTKLVHCIHGDMQQGARNRALSDFKASKFRVLVATDVVGR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  +I+ ++    ++ +HR GRTGR G++G++   +         R+    +  
Sbjct: 307 GIDISDVSHIINYDIPEFSDDYVHRVGRTGRMGKEGIAYTFVTPEEGNELTRIEVRIDKL 366

Query: 367 VVWEPAP 373
           ++ +  P
Sbjct: 367 LIRDELP 373


>gi|115375095|ref|ZP_01462364.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825404|ref|YP_003957762.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|115367933|gb|EAU66899.1| superfamily II DNA and RNA helicase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398476|gb|ADO75935.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 421

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 122/408 (29%), Positives = 192/408 (47%), Gaps = 11/408 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     +AL    +   T +Q   + P L  KDV+  A TG+GKT A+ L L        
Sbjct: 10  LSPTSLDALGRARFTQPTPIQARAIPPALAGKDVVGCAATGTGKTAAYVLPLVE------ 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RFS     L L +APTREL  Q+   +       G+   V +GG  +  +   L+    
Sbjct: 64  -RFSGRKGLLGLVLAPTRELVQQISEPVRLFAEPHGLTHTVVVGGEDMAAQVEALKERPT 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            ++ TPGRL D +  + +    L+A+VLDEAD MLD+GF+  IE IL + P++R+ L+FS
Sbjct: 123 FLLATPGRLVDLMASQAVTFPQLEALVLDEADRMLDMGFQFQIETILKALPRRRQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +T  A++     VRV +          + R   V   ++   ++ ++R +    
Sbjct: 183 ATLGPDVTRFARDRLYQPVRVEVTRSGTPAERAEQRLYSVKAEEKSALLLTLMRKNEGT- 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+    +  K L    +    L  + +Q +R  AL   R G  R  +ATD+AAR
Sbjct: 242 ALIFTRTKERADKVHKALQRAGYPCDVLHADRTQSQRKQALDAFRQGTCRCLVATDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  VI+ +L   PE+ +HR GRT RA   G++             R+       
Sbjct: 302 GLDVEDVGHVINYDLPHAPEDYVHRIGRTARAQASGVATTFATPKDAPTLARIESIMRTK 361

Query: 367 VVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKH 411
           V   P P  + + + + QR L   +DP       G  K+  D    +H
Sbjct: 362 VPRLPVPREDPVFQEEWQRHLAAQKDPGPPQKDHGVSKRTPDQAPGRH 409


>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 438

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/377 (30%), Positives = 194/377 (51%), Gaps = 6/377 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++    V+ +A+ E G+   T++Q  ++   +  +DV+ SA TG+GKT AF L +  
Sbjct: 2   SFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIMQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++ +  R  P  A  AL + PTRELA+Q+  + E L A T + VA  IGGV+  ++   
Sbjct: 62  HMI-DFPRRRPGPA-RALILTPTRELALQITEQAEALAAYTHMKVASIIGGVAEEKQLPA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++ TPGRL  +I  +  +   ++ +VLDEAD MLD+GF  D++ I   +  ++
Sbjct: 120 LEKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDEADRMLDMGFIGDVDRIAAEARWRK 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNI 238
           + ++FSAT+  A                 A   R       +          + N +  +
Sbjct: 180 QTMLFSATLEGAGLKKFAEDLLKDPAELYAEPPRSERKKIQQLVYFADTAEHKFNLLKYL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      +I+F  TR  ++     L  +      L GE+ Q++R  AL   R  R ++ 
Sbjct: 240 LQQEDVTRSIIFVKTRERLAELVSQLQANGIDCAWLRGEMEQEKRIEALNRFRSDRVKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RGIDLPD+  V + ++  + +  +HR GRTGRAG+KG ++ +I  +     ER
Sbjct: 300 VATDVASRGIDLPDVSHVFNYDMPRSADTYIHRIGRTGRAGKKGCAINLIEAHDVGMMER 359

Query: 359 LFREANVSVVWEPAPSV 375
           + R A   ++     S+
Sbjct: 360 VERYAEEKMMRRVVDSM 376


>gi|321399813|emb|CAJ08508.2| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 615

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 112/388 (28%), Positives = 187/388 (48%), Gaps = 17/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N
Sbjct: 142 LAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNN 201

Query: 67  -DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +R  P +   AP AL ++PTREL++Q+  E      +TG    V  GG     +  +L 
Sbjct: 202 LNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELT 261

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         
Sbjct: 262 RGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPP 321

Query: 183 LM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT    I  +A+ +      + +        +I      V   D+   ++
Sbjct: 322 PGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLL 381

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  R
Sbjct: 382 EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCR 441

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++       +   
Sbjct: 442 VLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIV 501

Query: 357 ER---LFREANVSVVWEPAPSVEAIRER 381
           +    L RE N +V     P V+A+ ++
Sbjct: 502 DDLIPLLRETNQTV----LPEVQALAKK 525


>gi|255034351|ref|YP_003084972.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254947107|gb|ACT91807.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 411

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 4/370 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F++ P    I  +L   G+   T +Q   +   ++ +DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FDDYPIAAEIKRSLEAAGFKKPTDIQFKAIPAVMKGEDVLAIAQTGTGKTAAFAIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +    S +     + + PTRELA+Q+      +   T V      GGV    + 
Sbjct: 60  IDKL-HKQKSSSRSEGIKCVVMVPTRELAIQIAEVFSSISRYTKVKTFSVFGGVEQGPQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGR+ D +    + +  +  ++LDEAD MLDLGF  DI+ ++   PK
Sbjct: 119 AKLEKGIDILVSTPGRMFDLVSQGHIRLDRVDTLILDEADHMLDLGFIKDIQDLIRHLPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSATI   I  LA +  ++A+R+ I+ +N    +ID+    VA+ D+   +  +
Sbjct: 179 RRQTLFFSATIDEKIKKLAYSLVRNAIRIQISPKNPVAKNIDHSVAFVAMDDKRFFLERV 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R +  K  +VF  T+    R    L     + + + G+  Q +R  A+   + G  ++ 
Sbjct: 239 IRQNADKKILVFVRTKVRAERVFNALERMEIKSLTIHGDKQQSDRLTAMNEFKKGNVKIL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDV+ARGID+P+++ VI+ +L   PE+ +HR GRTGR  +KG++V    +  +   + 
Sbjct: 299 IATDVSARGIDIPNVDYVINYDLPEQPESYVHRVGRTGRGMQKGIAVSFCSEEEKPLLDE 358

Query: 359 LFREANVSVV 368
           + +  +  + 
Sbjct: 359 IQQYLDKPIA 368


>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 432

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+ +     + +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + + A   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELIKQIADEAKEIGAILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIESLISQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    V V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEKTERLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEEDNPFLAIVFCNKREGAVRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|33519584|ref|NP_878416.1| cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
 gi|33517247|emb|CAD83630.1| Cold-shock DEAD-box protein A, inducible ATP-independent RNA
           helicase [Candidatus Blochmannia floridanus]
          Length = 487

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 125/431 (29%), Positives = 208/431 (48%), Gaps = 19/431 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + LS  GY     +Q   +   L+  D+L  A TGSGKT AF L L   +  + 
Sbjct: 13  LNTYIVDMLSNIGYQAPLPIQTQCIPLLLKGCDLLGMAHTGSGKTAAFLLPLLQNIDIKQ 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
                      L I PTRELA+Q+G    +       ++  AV  GG +   +  DL+  
Sbjct: 73  ------RFVQGLIIVPTRELAIQIGHVCMYFIKSLSHIINIAVLYGGQNYRIQFNDLKKN 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI++GTPGRL DH+     +IS LK +++DEADEML +GF +DIE I+   P  R+  +
Sbjct: 127 PHIIIGTPGRLLDHLSRGL-DISKLKTLIIDEADEMLRMGFIEDIEHIIRYVPTHRQTAL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+  +I  L+  +  +   + I       +DI     LV    +  A++  L     
Sbjct: 186 FSATLPVSIRKLSYKFMCNPKEIYINPSISACADIKQSYWLVHGISKHEALMRFLEVEKF 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F  T+++  + +++L    +   AL+G+++Q  R   +  +R G   + I TDVA
Sbjct: 246 EAVIIFVRTKSATLQISEILQRFGYNSAALNGDMNQSVRCKTISRLRCGTLDILITTDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE-- 362
           ARG+D+  +  VI+ ++  N    +HR GRTGRAGR G S+  + +        + +   
Sbjct: 306 ARGLDINRISFVINYDIPCNYNAYVHRIGRTGRAGRSGKSLLFVERQEYHLFNYVIKRRV 365

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKI 416
            N ++V    P+   +     ++       +++++  + +    LL K         EK+
Sbjct: 366 LNSNIVKVKCPTSNDLVRCRLKKFTDK--VVNNLESKDIEQYQSLLGKIKIDLDITIEKL 423

Query: 417 AAGFLRIHRAG 427
           AA  L+I +  
Sbjct: 424 AAILLKIAQGS 434


>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
          Length = 415

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 200/376 (53%), Gaps = 9/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G      +Q   +   L+  D+L  AQTGSGKT+AF L + + +L   
Sbjct: 14  LSSILVKNLFSAGMNKPKFIQAKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILTLG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL + PTRELA+Q+   +  +   T +   + +GG+S   + R +  G  
Sbjct: 74  DKRYPKTA-RALILVPTRELAIQIEEAISAVAKGTHLSTCLIVGGMSRLIQIRRMAKGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D IR K +++S  +  +LDEAD MLD+GF  D+  I +   +K +  +FS
Sbjct: 133 ILIATPGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFISDVRQIANFLHEKCQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA N  +  V++ + S+    ++I      V+ S++ + +  +L      +
Sbjct: 193 ATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + LA+  + V  + G  SQ  R  AL+  R+G  RV +ATD+AAR
Sbjct: 253 VIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR- 361
           GID+P +  VI+ +L  N E+ +HR GRTGR G  G ++ +  + +++      ERL R 
Sbjct: 313 GIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGYAITLFDEKIEQVRLCAIERLIRM 372

Query: 362 ---EANVSVVWEPAPS 374
                 + + + P P 
Sbjct: 373 KLKRKEIPLQFAPLPE 388


>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
          Length = 724

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 193/390 (49%), Gaps = 10/390 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 107 IQAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPA 166

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R S    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 167 TVHINHQ-PRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQA 225

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 226 RDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 285

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R++LM+SAT    +  LA+++  D +++NI S     N     I           + + 
Sbjct: 286 DRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEICQEHEKETKLSQ 345

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+
Sbjct: 346 LLREIGTERGSKMIIFVETKKKVDDITKAIKREGWSAISIHGDKSQPERDYVLSEFRNGK 405

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 406 TMILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 465

Query: 355 RAERL---FREANVSVVWEPAPSVEAIRER 381
           +A+ L     EA  ++  + A    +IR +
Sbjct: 466 QAKELIAVLEEAGQAINPQLADMANSIRNQ 495


>gi|316934368|ref|YP_004109350.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris DX-1]
 gi|315602082|gb|ADU44617.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           DX-1]
          Length = 469

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GYV+ T +Q+  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFTNLGLSTKVQAAVAAAGYVSPTPIQQQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   
Sbjct: 62  LLEKGRAR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVEMLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVN 237
           + L F+AT+   I  + + +  +  ++ ++        +    V         R+     
Sbjct: 179 QTLFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRHL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I      KNAI+FC+ +  V+   + L  H F V AL G++ Q  R  AL+  R G   +
Sbjct: 239 IRGATDLKNAIIFCNRKREVALLARSLQRHGFSVGALHGDMDQTARMAALEAFRKGELPI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTALTIVAPSDQKSMA 358

Query: 358 RLFREANVSVVW-EPAPSV 375
            + +     +   E APSV
Sbjct: 359 AIEKLIGQDIPRAEAAPSV 377


>gi|56461463|ref|YP_156744.1| ATP-dependent RNA helicase RhlB [Idiomarina loihiensis L2TR]
 gi|61214743|sp|Q5QYF8|RHLB_IDILO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56180473|gb|AAV83195.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 425

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 108/364 (29%), Positives = 181/364 (49%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+S  G+   T +Q   L   L  +DV   AQTG+GKT+AF LA  + L+   
Sbjct: 16  LHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNE 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S P AL +APTRELA+Q+  + + L    G+ + V  GG     ++  L     
Sbjct: 76  SSEKTESGPRALIMAPTRELAIQIAHDADALIEHCGLKMGVIYGGEGYEGQKEQLAAQPD 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           I+VGT GRL D  +    ++  ++ VVLDEAD M DLGF DDI +       P KR  L+
Sbjct: 136 ILVGTTGRLIDFYKQDLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSKRLNLL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +     ++ +    +  + +       +  ++   ++ ++     
Sbjct: 196 FSATLSYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLLTLIEEDWP 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +T+    +    L  +  +   L+G++ Q++R   L+   +G+    +ATDVA
Sbjct: 256 DKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILEDFAEGKLDFLVATDVA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++ +  +        +     
Sbjct: 316 ARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAISLACEEYVYNLPAIEDYIG 375

Query: 365 VSVV 368
            ++ 
Sbjct: 376 HTIP 379


>gi|91976935|ref|YP_569594.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
 gi|91683391|gb|ABE39693.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
          Length = 500

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 126/389 (32%), Positives = 202/389 (51%), Gaps = 11/389 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     +  A++  GY   T +QE  +   L  +DVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   
Sbjct: 62  MLEKGRAR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLTVALLIGGVSFGDQDVK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE +    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERVCKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVN 237
           + L F+AT+ P I  + + +  +  ++ ++        +    V         R+     
Sbjct: 179 QTLFFTATMPPEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I      +NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   +
Sbjct: 239 IRAATDLQNAIIFCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++  + Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVAPSDQKSIA 358

Query: 358 RLFREANVSVVWEPA-PSVEAIRERDAQR 385
            + +     +    A P+ +A  E + +R
Sbjct: 359 AIEKLIGKEIPHADAGPAGDA--EEETER 385


>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 434

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 5/360 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q + +AL + GY   + +Q+ ++   L  +DV+ +AQTG+GKT  F L +   L   
Sbjct: 7   DLIQPLLDALHKSGYKTPSPIQQKVIPLILNGQDVMAAAQTGTGKTAGFSLPILQRL--S 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A++   L + PTRELA QV + ++   A   +   V  GGV ++ +   L+ G 
Sbjct: 65  EGKRPSANSARCLILTPTRELAEQVHQSVQKYAANLHLNSIVVYGGVKINPQMLKLRRGT 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +    +  + L+ +VLDEAD MLD+GF   I+ I+   PKKR+ L+F
Sbjct: 125 DVLVATPGRLLDLMEQNAVRFNDLEFLVLDEADRMLDMGFLPSIKRIIGKLPKKRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S +I  +++ +  +   V     N   + +      V    +   +  ++ +H   
Sbjct: 185 SATFSESIKAISQQFLTNPSLVETEQTNTTAATVKQWIHPVDKKQKPALLSYLIGHHRWD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  TR   ++ +  L +   +  A+ G  SQ  R+ AL   + G+  V +ATDVAA
Sbjct: 245 QLLVFVRTRRGANKLSVDLEKRGIKATAIHGGKSQGARNRALSEFKSGKVTVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFRE 362
           RG+D+  + LVI+ +L +  E+ +HR GRTGRAG KG ++ ++  +     R  + L R+
Sbjct: 305 RGLDIEQMPLVINYDLPNVAEDYVHRIGRTGRAGEKGTAISLVSADEVDDLRAIQDLIRK 364


>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 529

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 230/471 (48%), Gaps = 31/471 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +P  + + +AL + GYV LT +Q   +   +   D+   AQTG+GKT+AF L  
Sbjct: 1   MK-FNELPFHESLSKALDKIGYVELTPIQAKSIPFAMEGNDLTGLAQTGTGKTMAFLLPT 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL+  +  +    P AL +APTREL +Q+  E + L   T + VA  IGG     + 
Sbjct: 60  LHRLLSAEEEEAL---PYALVLAPTRELTIQIAEEAKKLLEFTDLGVATIIGGTDYKSQE 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L N A I+V TPGRL D ++  GL++ ++K V+LDEAD M D+GF  D+++I      
Sbjct: 117 QALGNKACIIVATPGRLIDFVKNHGLSLENIKVVILDEADRMFDMGFVQDLKYIFHKCKN 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+S  +  LA  Y  D + V+I  E      ID   + +   ++   +VN 
Sbjct: 177 RKQSLLFSATLSYEVVRLASKYLNDPIEVHINPEKVITERIDQSLLHLGREEKLPYLVNS 236

Query: 239 LRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L  +  +   I+F + + ++ +    L         LS EL Q++R   L+  + G+ + 
Sbjct: 237 LLNYPIEGLGIIFTNYKMNIPKIVSALRRFGITATGLSSELDQKKRIRLLRDFKAGKYKY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RGID+ ++++V + +L  + EN +HR GRT RAGRKG S+    +      E
Sbjct: 297 LIATDVASRGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELE 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           R+ +  N  +       V  IRE   +  +    P+F D +   EKK  D          
Sbjct: 357 RIEKYLNSKIP------VAEIREEYLEFPKGEFTPVFADEVIPGEKKYQD---------- 400

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                 R        P +       SG  R  D +R     GG     K S
Sbjct: 401 ------RERGGRGGKPRQGERGERGSGEHRSGDRNRHKGKTGGGHPPAKMS 445


>gi|221487592|gb|EEE25824.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 475

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 175/379 (46%), Gaps = 9/379 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   + + +   + E+G+   + +QEA +   L  K++L  A+ G+GKT AF + L 
Sbjct: 102 TDFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLL 161

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                     +       L + PTRELA+Q    ++ +     V   V  GG S+  +  
Sbjct: 162 EKCQ------TSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIM 215

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L N  H++ GTPGR+ D       ++S+   VV+DEAD++L   F+  +E ++   P++
Sbjct: 216 RLYNPVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRE 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++LM+SAT    +      Y  DA  +N+  E             V    + + +  + 
Sbjct: 276 RQILMYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGV-TQYYAFVEERQKVHCLNTLF 334

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + E  +    +   + Q  R+      R+G  R  +
Sbjct: 335 SKLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLV 394

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ++D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    R+
Sbjct: 395 SSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRI 454

Query: 360 FREANVSVVWEPAPSVEAI 378
             E    +   P+   EAI
Sbjct: 455 ESELGTEIQPIPSQIDEAI 473


>gi|219110339|ref|XP_002176921.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411456|gb|EEC51384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 529

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 190/375 (50%), Gaps = 7/375 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  ++P+ +   + + G+   T +Q       L+ ++++  + TGSGKT+AF L    
Sbjct: 131 TFDEASMPEYVLNEVLKCGFDKPTPIQSQGWPMALKGRNMVGVSATGSGKTLAFLLPAMI 190

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+     P   P+ L +APTRELAVQ+  E +   + + +   V  GGV  H + R+
Sbjct: 191 HINAQ-PYLKPGDGPIVLVLAPTRELAVQIKEECDKFGSSSEIKNTVVYGGVKKHTQLRE 249

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I + TPGRL DH+     N+  +  +VLDEAD MLD+GF   +  I+      R
Sbjct: 250 LRAGAEICIATPGRLIDHLEQGNTNLKRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDR 309

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVN 237
           ++LM+SAT    +  LA +Y +D  +V + S +    +               R+     
Sbjct: 310 QVLMWSATWPKEVQALANDYLQDFYQVTVGSLDLSANKDVTQIIEVCTDMDKYRNLQRYL 369

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+      T+ L    FQ  A+ G+ SQ+ER  AL+  +  ++ +
Sbjct: 370 RENLSPKDRVLVFVETKKGCDMLTRSLRSDGFQARAMHGDKSQEERDWALREFKGMQSTL 429

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRA 356
            +ATDVAARG+D+ D+ +V++ +     ++ +HR GRTGRAG+KG +V F +P    R A
Sbjct: 430 LVATDVAARGLDVDDIRIVVNFDFPKEMDSYIHRVGRTGRAGKKGFAVSFFVPDKNARLA 489

Query: 357 ERLFREANVSVVWEP 371
             L    N +    P
Sbjct: 490 RELVDILNRTSQNVP 504


>gi|237830431|ref|XP_002364513.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962177|gb|EEA97372.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221507386|gb|EEE32990.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 475

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/379 (26%), Positives = 175/379 (46%), Gaps = 9/379 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   + + +   + E+G+   + +QEA +   L  K++L  A+ G+GKT AF + L 
Sbjct: 102 TDFEEYFLRRELLMGIFEKGFEKPSPIQEASIPIALAGKNILARAKNGTGKTAAFSIPLL 161

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                     +       L + PTRELA+Q    ++ +     V   V  GG S+  +  
Sbjct: 162 EKCQ------TSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIM 215

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L N  H++ GTPGR+ D       ++S+   VV+DEAD++L   F+  +E ++   P++
Sbjct: 216 RLYNPVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRE 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++LM+SAT    +      Y  DA  +N+  E             V    + + +  + 
Sbjct: 276 RQILMYSATFPVTVKDFKHKYLPDAHEINLMDELTLKGV-TQYYAFVEERQKVHCLNTLF 334

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + E  +    +   + Q  R+      R+G  R  +
Sbjct: 335 SKLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLV 394

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ++D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    R+
Sbjct: 395 SSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRI 454

Query: 360 FREANVSVVWEPAPSVEAI 378
             E    +   P+   EAI
Sbjct: 455 ESELGTEIQPIPSQIDEAI 473


>gi|45185883|ref|NP_983599.1| ACR197Wp [Ashbya gossypii ATCC 10895]
 gi|74694822|sp|Q75BS4|DHH1_ASHGO RecName: Full=ATP-dependent RNA helicase DHH1
 gi|44981673|gb|AAS51423.1| ACR197Wp [Ashbya gossypii ATCC 10895]
          Length = 484

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 101/403 (25%), Positives = 183/403 (45%), Gaps = 9/403 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +   
Sbjct: 29  NTFEDFYLRRELLMGIFEAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +  
Sbjct: 89  EIVKPKVNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIM 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++VGTPGR+ D    K  ++S     V+DEAD+ML   F+  +E IL   P+ 
Sbjct: 143 RLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQN 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 203 HQSLLFSATFPLTVKEFMVKHLNKPYEINLMDELTLKGI-TQYYAFVEERQKLHCLNTLF 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQER+      R G+ R  +
Sbjct: 262 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 322 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 381

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            +E    +   PA   +++   +    +  P  LD++QG+ + 
Sbjct: 382 EQELGTEIAAIPAQIDKSLYVAEDTSAVPVPFPLDTMQGNARA 424


>gi|45440809|ref|NP_992348.1| ATP-dependent RNA helicase RhlE [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45435667|gb|AAS61225.1| Superfamily II DNA and RNA helicases [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 470

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 27  LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 87  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 146

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 147 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 206

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 207 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 266

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 267 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 326

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 327 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 386

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 387 IPRIALDGYEPDPSIKA 403


>gi|302835930|ref|XP_002949526.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
 gi|300265353|gb|EFJ49545.1| hypothetical protein VOLCADRAFT_59325 [Volvox carteri f.
           nagariensis]
          Length = 722

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 187/389 (48%), Gaps = 14/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L +RG+     +Q   L   +  +D +  A+TGSGKT+AF L +   +  + 
Sbjct: 80  LSSRLLEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTMAFVLPMMRHI-KDQ 138

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P++L IAPTREL  Q+ +E +      G+      GG  V  +  +L+ G  
Sbjct: 139 PPLQQGDGPVSLVIAPTRELVAQIAKEAKAFGKPLGLNALAVFGGSGVANQISELKRGVE 198

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV  TPGR+ D      GK  N+  +  +VLDEAD M D+GF   I  I+ +    R+ +
Sbjct: 199 IVACTPGRMIDLLVTSNGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTV 258

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+    D V + +   +  + +I     +    +R + ++ IL    
Sbjct: 259 MFSATFPRQVEVLARKILTDPVEIQVGGRSIVNENITQFVEIRPEKERFHRLLEILGEWY 318

Query: 244 AKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +  + +F   + S     + L  + +  ++L G   Q +R + +   +     + +AT 
Sbjct: 319 ERGKLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNILVATS 378

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG ++  I  + +R A  L + 
Sbjct: 379 IAARGLDVKDLVLVVNYDVPNHHEDYVHRVGRTGRAGAKGTAITFIGPDEERYAPDLVKA 438

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPL 391
              S    P         +D QRI+  P 
Sbjct: 439 LRESGAAIP---------QDLQRIMCCPA 458


>gi|302853426|ref|XP_002958228.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
 gi|300256416|gb|EFJ40682.1| hypothetical protein VOLCADRAFT_77867 [Volvox carteri f.
           nagariensis]
          Length = 574

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 198/388 (51%), Gaps = 22/388 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P ++ +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S ++ 
Sbjct: 160 SGLPSLLIKAIDRVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYIMR 219

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +      + A  P A+ +APTRELA Q+  E   L   T   +A  +GG S+  +   L+
Sbjct: 220 QPPMTEENEADGPYAVVLAPTRELAQQIEEETHKLAYYTNYRIASVVGGQSIEEQGAKLR 279

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            G  IV+ TPGRL D I      ++    VVLDEAD M+DLGF   +  +LD+ P     
Sbjct: 280 KGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPSSFLK 339

Query: 178 ------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                         R   MFSAT+ PA+  LAK Y +  V V I S  +   ++  R  +
Sbjct: 340 PDEDGAVLEANRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGKVTDNVTQRVFV 399

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  +++   +   +     K  IVF +T+       + L E  ++   L G  +Q +R  
Sbjct: 400 VKENEKPRVLEQEMESVDEKRVIVFVNTQRQCDNVHRHLEELGYRCTILHGGKTQDQREA 459

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  RDG     IATDVA RGID+PD+ LVI+ ++ +N EN  HR GRTGRAG+KG++V
Sbjct: 460 GIKGFRDGTYNCLIATDVAGRGIDVPDVALVINYDMPNNIENYTHRIGRTGRAGKKGVAV 519

Query: 346 FVIPQNMQ---RRAERLFREANVSVVWE 370
             +           ++L  E+  +V  E
Sbjct: 520 TFLTLGDTGVFYDLKKLLEESKAAVPPE 547


>gi|46202850|ref|ZP_00052498.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 402

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 120/346 (34%), Positives = 184/346 (53%), Gaps = 1/346 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL   GY   T +QE  +   L+  DVL  AQTG+GKT +F L L   L    
Sbjct: 10  LAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQRLDQFK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P  +   L + PTRELAVQVG+  +       +  A+  GGV +  + + +  G  
Sbjct: 70  KRAMP-KSCRILVLTPTRELAVQVGQSFKTYGCHYRLRHALVFGGVGMVPQIKTMAGGVD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I    + +  ++A+VLDEAD MLD+GF   I  I+   PK+R+ ++FS
Sbjct: 129 VLVATPGRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPKQRQTVLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  LA +     VRV +   +     ID + + V    +   + +IL       
Sbjct: 189 ATMPDSIVGLANSVLHTPVRVEVTPVSSTVDKIDQKVLFVDREHKRTLLTDILGGADVVR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+   +R  ++L +      A+ G  SQ  R  AL   RDG+ +  +ATD+AAR
Sbjct: 249 ALVFTRTKHGANRVVELLEKAGIDADAIHGNKSQGARQKALSDFRDGKIKALVATDIAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GID+  +  VI+ EL + PE+ +HR GRT RAG  G+++ +   + 
Sbjct: 309 GIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDGDE 354


>gi|332233583|ref|XP_003265983.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 2
           [Nomascus leucogenys]
          Length = 577

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 191/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 142 TFEEADLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 201

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 202 HMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 261

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 262 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 321

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 322 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 381

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 382 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 441

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 442 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 501

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             +              +P   V    ++D    L++  F   I G        + A  D
Sbjct: 502 DNQL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGSVFASVD 549

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 550 TRKGKSTLNTAGFSSSQAPNPVDDES 575


>gi|332233581|ref|XP_003265982.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like isoform 1
           [Nomascus leucogenys]
          Length = 693

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 191/446 (42%), Gaps = 22/446 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 258 TFEEADLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 317

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 318 HMMRDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHS 377

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 378 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPG 437

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 438 MPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKR 497

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 498 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 557

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 558 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 617

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             +              +P   V    ++D    L++  F   I G        + A  D
Sbjct: 618 DNQL------------AQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGSVFASVD 665

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVS 438
             K  +       +   AP  +   S
Sbjct: 666 TRKGKSTLNTAGFSSSQAPNPVDDES 691


>gi|118482639|gb|ABK93239.1| unknown [Populus trichocarpa]
          Length = 413

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 100 QQLDYD------IVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 154 ILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++
Sbjct: 214 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGI++  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 334 ITTDLLARGINVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSD 393

Query: 359 LFREANVSVVWEP 371
           + R  NV+V   P
Sbjct: 394 IQRFYNVTVEELP 406


>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 466

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 209/413 (50%), Gaps = 25/413 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +AL+E GY   T VQ   +   +  +D++VS+QTGSGKT AF L    
Sbjct: 2   TFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPAS---------------------APLALAIAPTRELAVQVGRELEWLYA 99
              +E D+                           P  L + PTRELA+QV    +   A
Sbjct: 62  KFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYGA 121

Query: 100 KTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
               V AV  +GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDEAD
Sbjct: 122 FMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEAD 181

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
            MLD+GF DDIE I+ ++P+ R+ ++FSAT+   +  +AK   KDA+ + IA    +H +
Sbjct: 182 RMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHEN 241

Query: 219 IDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I      V   S ++  + ++LR      A+VF +T+         L    F   AL G+
Sbjct: 242 IKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGD 301

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           + Q  R+  L  +R G+ RV +ATDVAARGID+P +  V++ +L   PE+ +HR GRTGR
Sbjct: 302 MHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGR 361

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           AGR G++V ++        +R+ R     +  E     E  R   A R    P
Sbjct: 362 AGRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHKP 414


>gi|149189303|ref|ZP_01867589.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148836862|gb|EDL53813.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 431

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 199/392 (50%), Gaps = 2/392 (0%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +     I +AL+E GY  LT VQ+  +    R  D+L  AQTG+GKT AF L +   ++ 
Sbjct: 6   QGFSSEIVQALTECGYEKLTPVQQQAIPHARRGHDILAHAQTGTGKTAAFSLPIIQQIV- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  +     A  AL +APTREL  Q+   +E       V VA   GG  +  + R L+ G
Sbjct: 65  DTPKARTRGAVRALILAPTRELVDQIANNIESYTQYVDVSVAAVFGGAKMSSQERKLEAG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL +H+    + +++L+ +V DEAD MLD+GF   I  I+ S   + + ++
Sbjct: 125 VDILVATPGRLIEHLELGNVKLANLEFLVFDEADRMLDMGFISAIRTIMSSVNSQPQTML 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT SP +  LA++  +   R+ + +EN     + +    V    +   +  ++     
Sbjct: 185 FSATSSPQMNALAQDLLRKPKRIIVNAENSTADTVAHVVYPVDEDRKLELLSELIGRKNW 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF + + + +   K L     + V   G+ +Q  R  AL+  + G+ARV +AT+VA
Sbjct: 245 QQVLVFVNYKETANEVVKELKLDGIKAVLCHGDKAQSSRRRALEEFKTGKARVMVATEVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  V++ ++    E+ +HR GRTGRAG++G +V  + +  +    ++     
Sbjct: 305 ARGLDIQGLPHVVNYDMPFLAEDYVHRIGRTGRAGQQGHAVSFVSREEELTLVQIENLIQ 364

Query: 365 VSVVWEPAPSVE-AIRERDAQRILQDPLFLDS 395
             +        E A R+   Q++   P + D 
Sbjct: 365 HRIKRIQLAGYEPANRDALLQKMHTKPAYKDR 396


>gi|50289935|ref|XP_447399.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661253|sp|Q6FQU5|DHH1_CANGA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49526709|emb|CAG60336.1| unnamed protein product [Candida glabrata]
          Length = 507

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 169/373 (45%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +   
Sbjct: 31  NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 90

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    GV   V  GG ++  +  
Sbjct: 91  EKIKPKLNKI------QALIMVPTRELALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDIL 144

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++VGTPGR+ D    K  ++S     V+DEAD+ML   F+  IE +L   PK 
Sbjct: 145 RLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKA 204

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT    +      +      +N+  E             V    + + +  + 
Sbjct: 205 HQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLF 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + +  +        + QQ+R+      R G+ R  +
Sbjct: 264 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQDRNKVFHDFRQGKVRTLV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++
Sbjct: 324 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKI 383

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 384 EQELGTEIAAIPA 396


>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 507

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 119/410 (29%), Positives = 200/410 (48%), Gaps = 16/410 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+ +     I EA    G+   T +Q   +   +  +D++  AQTGSGKT AF + + 
Sbjct: 82  TTFDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPIL 141

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL             AL ++PTRELA Q+ ++ E L A  GV   V +GG+ V ++  
Sbjct: 142 QQLLQSPQP------LFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAM 195

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+VGTPGR+  H+          LK +V+DEAD +L + F ++I  IL   PK
Sbjct: 196 VLARKPHIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPK 255

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
            R   +FSAT++  +  L K    + ++V +AS      D    +   +    +D  +  
Sbjct: 256 NRNTYLFSATMTSKVAKLQKASLVNPIKVQVASTKYSTVDTLVQQYCFIPYQHKDCYLTY 315

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL      +AIVF +T A+ +R + +L       + ++G + Q +R  +L   +     +
Sbjct: 316 ILNELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNI 375

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P + LV++ ++  N +  +HR GRT RAG+ G ++ ++ Q      +
Sbjct: 376 LVATDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQ 435

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEK 401
           R+    +  +   P+ S      +EA+ E      L+       ++  E+
Sbjct: 436 RIEFALSKKLEEFPSESSSVLVFLEAVNEAARLASLEVKEDTRVMEDSER 485


>gi|188994014|ref|YP_001928266.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
 gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
           33277]
          Length = 427

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 185/371 (49%), Gaps = 8/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L    ++  T VQ A + P L  +DV+  AQTG+GKT A+ L +   L   
Sbjct: 7   NLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPILDRL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQ 122
           +     +    A+ +APTRELA Q+ +++E       V      GG       ++RR + 
Sbjct: 64  SAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRRGMA 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  H+     ++SH+   VLDEAD MLD+GF DDI  I    P   + 
Sbjct: 124 MGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSSCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I  LA +  +D + V   + +R    I   A +   + +   +  +    
Sbjct: 184 VMFSATMPPKIRKLAASILRDPIEV-EIAISRPPESIMQSAYICYEAQKLPILRKLFEQS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F S +  V   T  L +  F V  +  +L Q +R   ++  ++G   V +ATD
Sbjct: 243 APKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFR 361
           + ARGID+ ++ +VI+ ++  +PE+ +HR GRT R    +G+++  + +  Q    ++  
Sbjct: 303 IVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKIET 362

Query: 362 EANVSVVWEPA 372
               SV   P 
Sbjct: 363 FLGKSVYKLPV 373


>gi|229917498|ref|YP_002886144.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229468927|gb|ACQ70699.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 481

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 128/413 (30%), Positives = 208/413 (50%), Gaps = 23/413 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL    Y + T VQ+ ++   L  +D++V AQTGSGKT AFG+ +   +    
Sbjct: 11  LSDEITRALGIMKYESPTEVQQQVIPRALEREDLVVKAQTGSGKTAAFGIPVIELIDWAE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      P  L + PTRELAVQV  ++  +     +      G     ++R +L+   H
Sbjct: 71  NK------PQVLVLTPTRELAVQVREDMTNIGRFKRIKATAVYGKEPFSKQREELKQKTH 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DHI  + L++  ++ +++DEADEML+ GF  D+E IL   PK R  ++FS
Sbjct: 125 IVVGTPGRVMDHIERETLSLDRIEYLIIDEADEMLNRGFLADVEKILQQLPKDRVTMVFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  L + +     RV I S     S I++R + V  +++   + +I       +
Sbjct: 185 ATFPQDIERLCQKHMNAPARVAIESTGMTASTIEHRLLPVHRNEKLAVLQDITVVENPDS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC T+ +V      L +  +    L G L Q++R   +   + G  R  +ATDVAAR
Sbjct: 245 CMIFCRTKENVDTVYAELDKAGYSAERLHGGLEQEDRFAVMNGFKMGNFRYLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++ELVI+ ++    E+ +HR+GRTGRAG++G ++ ++ +  +R    +       
Sbjct: 305 GIDVDNVELVINYDVPVEKESYVHRTGRTGRAGKQGTAITLMTRQEERLIGAIESYVQFE 364

Query: 367 VVWEPAPSVEA-----------------IRERDAQRILQDPLFLDSIQGDEKK 402
           +    AP+                    +R     RI QD + L    G +KK
Sbjct: 365 IPMIDAPTEAEVAANQDAFEQKLSGRRVVRNNKTARINQDIMKLHFSGGKKKK 417



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 4/144 (2%)

Query: 401 KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           K+   + L     E++        +  +   +  T   + + +D F       +V   ++
Sbjct: 338 KQGTAITLMTRQEERLIGAIESYVQFEIPMIDAPTEAEVAANQDAFEQKLSGRRVVRNNK 397

Query: 461 DNFKGSSWFSL--SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                     L  S G K+K  A   +  + +  G++   IG I +   +T+V++     
Sbjct: 398 TARINQDIMKLHFSGGKKKKLRAVDFVGTIAKIPGVSADDIGIITINDQMTYVDILNGKG 457

Query: 519 DLLRRTVKLD--KGIQLKYLGGEK 540
            ++ + ++    KG +LK     K
Sbjct: 458 SIVLQAMETTPVKGKKLKVSKARK 481


>gi|90412948|ref|ZP_01220947.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
 gi|90326127|gb|EAS42561.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium profundum 3TCK]
          Length = 422

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 194/383 (50%), Gaps = 12/383 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   + + ++E G+   T +QE  +   L   D++  AQTG+GKT AFGL +   LL   
Sbjct: 8   LNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTGKTAAFGLPMIQRLLASQ 67

Query: 64  ---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +        A  AL + PTRELA QV   +      T + VAV  GG S+  + + 
Sbjct: 68  QSEHDEGYIKKPEAIRALVLTPTRELAQQVHDSILAYSKNTSIKVAVAYGGTSMGVQVKA 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++ TPGRL DH     +++S ++ +VLDEAD MLD+GF  DI+ I+   P+KR
Sbjct: 128 LKSGVDILIATPGRLLDHAFTGTVDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  +  LA +   D   + +  EN     +      V    +   +  ++ 
Sbjct: 188 QTLLFSATFSNQVKKLAYDILADPKLIEVTPENIAAESVTQMVYPVDKHRKRELLSYLIG 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  +A
Sbjct: 248 SRNWNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEGKVRAMVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L  V++ +L    E+ +HR GRTGRAG  G ++ ++  + +     + 
Sbjct: 308 TDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGSAISLMSIDEEWALRAIE 367

Query: 361 REANVSVV------WEPAPSVEA 377
              +  +       +EP P+++A
Sbjct: 368 ELLDTRLPQEWLEGYEPDPTIKA 390


>gi|296201832|ref|XP_002748195.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 2
           [Callithrix jacchus]
          Length = 603

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 89  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 148

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 149 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 207

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 208 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 267

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 268 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 327

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 328 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 387

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 388 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 447

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 448 VLREANQAINPKLLQLVED 466


>gi|194387478|dbj|BAG60103.1| unnamed protein product [Homo sapiens]
          Length = 603

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 89  NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 148

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 149 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 207

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 208 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 267

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 268 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 327

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 328 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 387

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 388 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 447

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 448 VLREANQAINPKLLQLVED 466


>gi|197123043|ref|YP_002134994.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196172892|gb|ACG73865.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 651

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 221/466 (47%), Gaps = 13/466 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +  A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +  
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +      P AL + PTRELA+QV  E+  L     + V    GG S+  +   
Sbjct: 81  RIPDGRRK------PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDK 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVVGTPGR+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   
Sbjct: 135 LKAGAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADV 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT+   I  +  +Y  D   +     E +  +  +     V    +   ++ ++
Sbjct: 195 QQLLFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+FC+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +
Sbjct: 255 GMEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ DL  VI+  L  +P   LHR GRTGR G+KG S+ ++          L
Sbjct: 315 ATDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTAL 374

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            ++  +    +  P+ E  R+    R   +L+D +   SI      +   L  + D E +
Sbjct: 375 QKKYEIVFEKKALPTPEEARKIWTDRHVAVLKDAM-SSSIFEAYIPLAQELRNRPDGEYL 433

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  L+         +          R       +      G R  
Sbjct: 434 ISFALKYFFTHQRMEKAQDREKAEHKRTEHERRVQPEGRAAGRRAP 479


>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 455

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 194/374 (51%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT +F L +   L  + 
Sbjct: 8   LSDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTASFVLPILQMLD-DG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     AL +APTRELAVQV   ++       +      GGV    ++R L  G  
Sbjct: 67  IKVRPKR-VRALILAPTRELAVQVEDNIKQYSKHLNLKSMAMYGGVDYEPQKRRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ + +++A        ID   V V    + + + ++++    + 
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKNASADPKIDQWLVTVDKDMKSSLLSHLIQEQQWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  +     SQ  RS  L+  ++G+ +  IAT VA+R
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L   PE  +HR GRTGRAG  G ++  + ++  +    +       
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSKDNFKNLCMIESLLGHL 365

Query: 367 VVWEPAPSVEAIRE 380
           +V +     +  +E
Sbjct: 366 IVRKEIEGFKPKKE 379


>gi|255580688|ref|XP_002531166.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223529236|gb|EEF31209.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 116/388 (29%), Positives = 195/388 (50%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 127 VNTFAEIDLGEALNQNIRRCKYVKPTPVQRNAIPIILAGRDLMACAQTGSGKTAAFCFPI 186

Query: 59  ASTLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++ E      R      PLAL ++PTREL+ Q+  E +    +TGV V V  GG  +
Sbjct: 187 ISGIMREQYVQRPRGPRTVYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPI 246

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 247 NQQLRELERGVDILVATPGRLVDLLERARISLQMIRYLALDEADRMLDMGFEPQIRKIVE 306

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                       ++FSAT    I  LA ++    + + +         I  R   V  +D
Sbjct: 307 QMDMPPPGRRQTMLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIVQRVEFVHETD 366

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F    + G+ +QQER
Sbjct: 367 KRSHLMDLLHAQRETEINIKHSLTLVFVETKKGADSLENWLCVNGFPATTIHGDRTQQER 426

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 427 EMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGL 486

Query: 344 SVFVIPQN---MQRRAERLFREANVSVV 368
           +     +N   + R    L +EAN  V 
Sbjct: 487 ATAFFNENNLSLARPLADLMQEANQEVP 514


>gi|149914630|ref|ZP_01903160.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
 gi|149811423|gb|EDM71258.1| putative ATP-dependent RNA helicase, putative [Roseobacter sp.
           AzwK-3b]
          Length = 470

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 131/385 (34%), Positives = 210/385 (54%), Gaps = 9/385 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +FE   +P  + + L+  G    T +Q   +   L  +DV+  AQTG+GKT AFGL L
Sbjct: 31  LNLFEEMGLPGPLVKKLALMGITEPTPIQTHAIPFALDSEDVMGLAQTGTGKTAAFGLPL 90

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L+ E  + +P  A  +L +APTRELA Q+   L  L   T + VA+ +GG S+  + 
Sbjct: 91  LAKLMEEPGKPAP-KAVRSLILAPTRELAGQIRDTLLPLVKDTPIKVALVVGGASIGAQI 149

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +Q G  ++V TPGRL D +  + L++S  + +VLDEAD+MLDLGF   +  I    P 
Sbjct: 150 KRMQMGTDVLVATPGRLLDLLDRRALSLSDTRFLVLDEADQMLDLGFIHALRKIAGLLPS 209

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT+   +  +A +Y     RV ++   +    +      +A + + + +V +
Sbjct: 210 TRQTMLFSATMPKQMEEIAGSYLTHPKRVQVSPPGKAADKVTQGVHFIAKAAKGDLLVEL 269

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  + A+VF  T+    +  + L +  + V A+ G  SQ +R  AL+  RDG  RV 
Sbjct: 270 LDKHREELALVFARTKHGSDKLARKLEQAGYAVAAIHGNKSQGQRERALRAFRDGEVRVL 329

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + +L + PEN +HR GRT RAGR G +V     +     + 
Sbjct: 330 VATDVAARGLDIPDVKHVYNFDLPNVPENYVHRIGRTARAGRDGAAVAFCAPDEMGELKD 389

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +   +S+       WE  P  +A
Sbjct: 390 IQKVMKMSIPVLSGRAWEELPDPKA 414


>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
 gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
          Length = 455

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 122/423 (28%), Positives = 215/423 (50%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TG GKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGPGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|323302724|gb|EGA56530.1| Dbp1p [Saccharomyces cerevisiae FostersB]
          Length = 617

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 221 PSPVPEKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 281 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 521 NIVKGLMEILNEANQEVP 538


>gi|241958200|ref|XP_002421819.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645164|emb|CAX39763.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 557

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 181/379 (47%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + + ++G+   T++Q       L  +D++  A TGSGKT+++ L  
Sbjct: 116 ITTFDEAGFPDYVLQEVKDQGFPKPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 175

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+  +      P+ L +APTRELAVQ+  E       + +      GG     + 
Sbjct: 176 IVHINAQ-PQLQYGDGPIVLVLAPTRELAVQIQTECAKFGKSSRIRNTCVYGGAPKGPQI 234

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 235 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 294

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++V I S     +   + +       +  DR   
Sbjct: 295 DRQTLMWSATWPKEVQQLARDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVK 354

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF ST+ +    T  L    +  +A+ G+  Q ER   L   R G+
Sbjct: 355 HLESALNERENKILVFASTKRTCDEITTYLRSDGWPALAIHGDKDQSERDWVLDEFRKGK 414

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGR G  G ++        +
Sbjct: 415 TSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTDGNSK 474

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REA+ ++  E
Sbjct: 475 LGGDLCKIMREAHQTIPPE 493


>gi|307823524|ref|ZP_07653753.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307735509|gb|EFO06357.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 419

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 190/372 (51%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ GY   + +Q   +   L   DVL +AQTG+GKT  F L +   L    
Sbjct: 8   LSDPLLRAIADAGYTTPSPIQSQAIPAVLGGHDVLAAAQTGTGKTAGFTLPILHRL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNG 124
             +        L + PTRELA Q+G  +    A         V  GGV ++ +   L+ G
Sbjct: 66  KAYGNNRPVRVLILTPTRELAAQIGESVNKYGAHLHPRLKSEVVFGGVKINPQMMRLRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D +    + +  ++ ++LDEAD MLD+GF  DI  I+   PKKR+ L+
Sbjct: 126 VDILVATPGRLLDLVNQNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFLPKKRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  L      + +++ +A  N     ++  A LV  +++   + ++++ H  
Sbjct: 186 FSATFSEDIRKLTTGLLVNPIKIEVAPRNTAAELVEQVAYLVNKANKTELLCHLIKEHDW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF +T+   +R T+ L +   +  A+ G  SQ  R++AL   + G  RV +ATDVA
Sbjct: 246 QQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTSALSGFKAGEIRVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ EL   PE+ +HR GRTGRAG +G ++ ++  +       + +   
Sbjct: 306 ARGIDINLLPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFLRLVEKLIG 365

Query: 365 VSVVWEPAPSVE 376
             +  E     E
Sbjct: 366 KEIKREQITGFE 377


>gi|56090441|ref|NP_001007614.1| probable ATP-dependent RNA helicase DDX5 [Rattus norvegicus]
 gi|50927691|gb|AAH79036.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
 gi|149054596|gb|EDM06413.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054597|gb|EDM06414.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
 gi|149054598|gb|EDM06415.1| ddx5 gene, isoform CRA_b [Rattus norvegicus]
          Length = 615

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|289623983|ref|ZP_06456937.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648770|ref|ZP_06480113.1| ATP-dependent RNA helicase rhlE, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868972|gb|EGH03681.1| ATP-dependent RNA helicase rhlE [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 442

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/368 (31%), Positives = 181/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALEALGYQTPTPVQTQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P +   AL +APTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VAP-NCVRALVLAPTRELADQVHESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF +++  I    PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +  +++++ H     +
Sbjct: 189 FSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRVGVDQLVDRLQGLGLNADGIHGDKPQATRQRALDRFKSNEVKILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIEVLTRQTLE 368

Query: 369 WEPAPSVE 376
            +     E
Sbjct: 369 RKEEQDFE 376


>gi|262038471|ref|ZP_06011845.1| DEAD-box ATP-dependent RNA helicase YdbR [Leptotrichia goodfellowii
           F0264]
 gi|261747566|gb|EEY35031.1| DEAD-box ATP-dependent RNA helicase YdbR [Leptotrichia goodfellowii
           F0264]
          Length = 484

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 122/468 (26%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG S+  + + L++G  IVVGTPGR+ D +R K L +++L   VLDEADEML++GF
Sbjct: 1   MAVYGGASIENQIKKLKSGVDIVVGTPGRVMDLMRKKVLKVNNLDYFVLDEADEMLNMGF 60

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE IL+ +  +++ML FSATI   I ++AK +  D   + +  E       +     
Sbjct: 61  IEDIELILEETNDEKKMLFFSATIPKTIMSIAKKFMNDYKLLKVKKEELTTDLTEQIYYE 120

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V   D+  A+  +L Y      IVFC T++ V   T  L    +    + G+++Q  R  
Sbjct: 121 VKQEDKFEALCRVLDYTQNFYGIVFCRTKSEVDEVTNKLKARNYDAECIHGDITQGLRQK 180

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL + +     + +ATDVAARGID+ +L  VI+  +    E+ +HR GRTGRAG KG+++
Sbjct: 181 ALDLFKKKILTILVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAI 240

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKM 403
             +     R   ++ R     +  E  P+VE I     + ++   D +  +      + +
Sbjct: 241 TFVTPREARTLSQIKRVTKTDIKRETIPNVEEILNAKKEALIAYIDEIIKEEDYTSYEGL 300

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            D L+   DP+++ +  LR        PE  + +  V                       
Sbjct: 301 ADKLIEGRDPKQVLSSLLRHFYEDEFLPENYSEIEDVK-------------------VKI 341

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +++GSK       L+ +L + +    + +  I++    +F+ V     + + R
Sbjct: 342 DDKTRLFIALGSKDGYNPGRLLDLLNKKAKTPGRKVKDIKIMDKYSFITVPLQEAEYIMR 401

Query: 524 TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQ-DGATKRFKRFKGA 570
            +   K  +            G  S G +++  + +G +KR ++    
Sbjct: 402 ALNSKKDSKPLVEKATGGQSGGGSSEGKRTRGRKSEGESKRRRKSDDK 449


>gi|205364353|gb|ACI04543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Rattus norvegicus]
          Length = 614

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
 gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
          Length = 458

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 11/388 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +      ++ E GY++ T +Q   +   L+ KD++ SAQTG+GKT AF L +  
Sbjct: 25  TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L AE+          +L + PTRELA QV    +       +      GGVS+  + + 
Sbjct: 85  LLRAEDKP--KRYQVHSLVLTPTRELAAQVEASAKAYTKYLALRSDAVFGGVSIRPQVKR 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  I+V TPGRL D I  K +   +LK +VLDEAD MLD+GF  DI+ +++  PK R
Sbjct: 143 LQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRMLDMGFIRDIKKVIEYLPKNR 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + +MFSAT S  I  LA     D V +  + +N+    I++      ++ + + + ++++
Sbjct: 203 QNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVDLLCHLIK 262

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF  T+    +  K+L     +  A+ G  SQ  R+ AL+  ++G  ++ +A
Sbjct: 263 TNKWKQVLVFARTKHGADKVVKILCHQHMRASAIHGNKSQGARTRALEGFKNGDIKILVA 322

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG  G ++ ++        + + 
Sbjct: 323 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGEAGHAISLVAAEEALLLKAIE 382

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           +         P P V+ +     Q+IL+
Sbjct: 383 KFIG-----NPLPKVDVV--GFEQKILK 403


>gi|83816893|ref|NP_031866.2| probable ATP-dependent RNA helicase DDX5 [Mus musculus]
 gi|26354006|dbj|BAC40633.1| unnamed protein product [Mus musculus]
 gi|74141529|dbj|BAE38540.1| unnamed protein product [Mus musculus]
 gi|74177712|dbj|BAE38954.1| unnamed protein product [Mus musculus]
 gi|82568932|gb|AAI08370.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|120537322|gb|AAI29875.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|123243266|emb|CAM18566.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|127799027|gb|AAH62916.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Mus musculus]
 gi|148702364|gb|EDL34311.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702366|gb|EDL34313.1| mCG2872, isoform CRA_a [Mus musculus]
 gi|148702367|gb|EDL34314.1| mCG2872, isoform CRA_a [Mus musculus]
          Length = 615

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|114047740|ref|YP_738290.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889182|gb|ABI43233.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 487

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 209/459 (45%), Gaps = 7/459 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+ 
Sbjct: 8   LHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR-FADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     A+ + PTRELA+QV   +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FS
Sbjct: 126 LLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++ +    
Sbjct: 186 ATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQENNWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    ++ +HR GRTGRAG +G ++  + ++  R    + R     
Sbjct: 306 GIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-----VLLAKHDPEKIAAGFL 421
           +V       E  +      +   P    + +    K  D        +   P    A   
Sbjct: 366 IVRREIAGFEPKKIVPISILNFVPKSASTTERKPHKPTDTSAQPRPYSSGKPGTFEATQA 425

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           + HR+    P    P +    R   R DSR      G+ 
Sbjct: 426 KKHRSAKATPAPKAPKTGTDSRSGTRSDSRPANPLQGNP 464


>gi|30584123|gb|AAP36310.1| Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [synthetic construct]
 gi|60653929|gb|AAX29657.1| DEAD box polypeptide 5 [synthetic construct]
          Length = 615

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|320167743|gb|EFW44642.1| eIF4AIII protein [Capsaspora owczarzaki ATCC 30864]
          Length = 413

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 190/368 (51%), Gaps = 7/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + +   G+   +++Q+  + P L+ +DV+  AQ+G+GKT  F ++  + +   
Sbjct: 43  NLKPELLQGIYAYGFEQPSAIQQRAIRPILKGRDVIAQAQSGTGKTATFSISALNCVEPA 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL ++PTRELA Q+ + +  L    GV    CIGGVSV  + + L  G 
Sbjct: 103 T------RETQALVLSPTRELAQQIQKVVLALGDYMGVQCHACIGGVSVAEDIKKLDYGQ 156

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V GTPGR+ D I+ + L   ++K ++LDEADEML  GF++ I  I    P   ++++ 
Sbjct: 157 HVVSGTPGRVFDMIKRRHLRTRNIKMLILDEADEMLSRGFKEQIYDIYRYLPPTTQVVIV 216

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   +  +   +  D +R+ +  +      I    + +     + + + ++      
Sbjct: 217 SATLPHEVLEITTKFMTDPIRILVKRDELTLEGIKQFFISVEREEWKFDTLCDLYDTLII 276

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V    + +A+  F V  + GE+ Q+ER   ++  R G  RV I TD+ 
Sbjct: 277 TQAVIFCNTRRKVEFLAEEMAKANFTVSHMHGEMDQKERDTIMKQFRSGATRVLITTDLW 336

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L  N EN +HR GR+GR GR G+++  +  +  R    + +   
Sbjct: 337 ARGIDVQQVSLVINYDLPINRENYIHRIGRSGRFGRSGVAINFVTNDDVRTLRDIEQYYA 396

Query: 365 VSVVWEPA 372
             +   P 
Sbjct: 397 TQIEEMPM 404


>gi|315049467|ref|XP_003174108.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
 gi|311342075|gb|EFR01278.1| ATP-dependent RNA helicase fal1 [Arthroderma gypseum CBS 118893]
          Length = 403

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 30  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 90  VID------TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 144 LEHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 204 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 264 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 324 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 383

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 384 ELYYSTQIDEMPM 396


>gi|119510127|ref|ZP_01629266.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
 gi|119465188|gb|EAW46086.1| DEAD/DEAH box helicase-like protein [Nodularia spumigena CCY9414]
          Length = 437

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 188/368 (51%), Gaps = 4/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L   D+L  AQTG+GKT  F L +   L ++ 
Sbjct: 8   LSHEIIRAVTEQGYTEPTPIQMQAIPAVLSGSDLLAGAQTGTGKTAGFTLPMLHRLSSDK 67

Query: 67  DRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQ 122
           +  S +       AL + PTRELA QV   +        +   V  GGVS++ ++R   +
Sbjct: 68  NVKSTSHGYSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKRLLKE 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V TPGRL DH++   +N+SH++ +VLDEAD MLD+GF  DI  IL   PK+R+ 
Sbjct: 128 GRVDILVSTPGRLLDHVQQGTVNLSHIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQN 187

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+F AT S  I  LA         + +A  N     +  +   V    +   + +++R  
Sbjct: 188 LLFFATFSEKIKALAAGLLNRPKMIEVARRNVTADTVTQKVYKVDRDKKRQLLAHLIRQD 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF  T+    R  K L E   Q +A+ G  SQ  R++ L   ++   +V +ATD
Sbjct: 248 NWYQVLVFTRTKYGADRLVKQLGEERIQALAIHGNKSQSSRTHTLAKFKNNSLQVLVATD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ +L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + + 
Sbjct: 308 IAARGLDISELPHVVNFDLPNVAEDYVHRIGRTGRAGASGEAISLVSADEYHLLADIEKL 367

Query: 363 ANVSVVWE 370
               + +E
Sbjct: 368 IAQRLPFE 375


>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter sp. FRC-32]
 gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter sp. FRC-32]
          Length = 443

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 201/376 (53%), Gaps = 7/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            ++F N   +I  A+ E GYV  T +Q   + P +  KDV+  AQTG+GKT AF L +  
Sbjct: 3   FQLF-NFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+       P     AL IAPTRELA Q+   +  L  +T +  A   GGV+++ + + 
Sbjct: 62  RLME-----GPRGRVRALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  IVV  PGRL DH+  + +++SHL+ +VLDEAD+M D+GF  DI  IL   PKKR
Sbjct: 117 LRNGVEIVVACPGRLLDHMGQRTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  LA     + V V + S     + +++    V+   +   ++ +LR
Sbjct: 177 QTLLFSATMPPDIKRLAGEILHNPVTVQVGSTAPPVT-VNHAIYPVSQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ +VF  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDKQSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ +++   E  +HR GRTGRA R G +  ++          + 
Sbjct: 296 TDIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSGDAFTLVTAEDTAMVRTIE 355

Query: 361 REANVSVVWEPAPSVE 376
           +     +        +
Sbjct: 356 KALGAPLERRTVEGFD 371


>gi|302910116|ref|XP_003050220.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256731157|gb|EEU44507.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 407

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 194/380 (51%), Gaps = 10/380 (2%)

Query: 3   IFENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            FE++    + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++ 
Sbjct: 33  TFESMSLKAENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISML 92

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              AL ++PTRELA Q+   +  L     V    CIGG +V  + R
Sbjct: 93  QVINIA------VRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIR 146

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P  
Sbjct: 147 KLDHGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPA 206

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++
Sbjct: 207 TQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDL 266

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV 
Sbjct: 267 YDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVL 326

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    
Sbjct: 327 ISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRILRD 386

Query: 359 LFREANVSVVWEPAPSVEAI 378
           +    +  +   P    + I
Sbjct: 387 IELYYSTQIDEMPMNVADLI 406


>gi|3776001|emb|CAA09203.1| RNA helicase [Arabidopsis thaliana]
          Length = 498

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 173/373 (46%), Gaps = 11/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + + + + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + +   
Sbjct: 126 FENYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   N+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 186 IDPNNNVI------QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 239

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 240 HQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 299

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    +      + +    +N+  +             V    + + +  +   
Sbjct: 300 FLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 358

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 359 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 419 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 478

Query: 362 EANVSVVWEPAPS 374
           E    +  +P PS
Sbjct: 479 ELGTEI--KPIPS 489


>gi|294140728|ref|YP_003556706.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293327197|dbj|BAJ01928.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 448

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 197/380 (51%), Gaps = 4/380 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     I  +L+E GY + T +Q   +   L+ K+++ +AQTGSGKT  F L +  
Sbjct: 2   SFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPMLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    ++        AL + PTRELAVQV   +E       +      GGV    +++ 
Sbjct: 62  MLARGENQRKKRI--RALILTPTRELAVQVCTSIEAYGKYLNLKALAVYGGVDYGPQKQA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P+ R
Sbjct: 120 LIEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  +  LAK    +A+++++  ++    +ID   V V    +   + ++++
Sbjct: 180 QNLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKDKKSALLSHLIK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +    A++F  T+   ++    L +   +   +    +Q  R   L   + G+ +  I+
Sbjct: 240 ENSWPQALIFIETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYLIS 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T ++ARGID+ DL LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++  +    + 
Sbjct: 300 TGISARGIDIDDLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCMIE 359

Query: 361 REANVSVVWEPAPSVEAIRE 380
           R  ++ +  +     E  +E
Sbjct: 360 RRLDLLIERKVVEGFEPRKE 379


>gi|209876956|ref|XP_002139920.1| ATP-dependent RNA helicase [Cryptosporidium muris RN66]
 gi|209555526|gb|EEA05571.1| ATP-dependent RNA helicase, putative [Cryptosporidium muris RN66]
          Length = 406

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 174/371 (46%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  KD+L  A+ G+GKT AF + L   
Sbjct: 35  FEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLEK 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + +          L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 95  INTKKNTI------QGLILVPTRELALQTSSIVKQLGKHISVQCMVSTGGTSLRDDILRL 148

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  H++VGTPGR+ D    K  N+S     ++DEAD++L   F+  IE +++  PK+R+
Sbjct: 149 NNPVHVLVGTPGRVLDLANKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQ 208

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +      Y  +A  +N+  E             V    + + +  +   
Sbjct: 209 ILLYSATFPVTVKGFKDKYLSNAHEINLMDELTLKGV-TQYYAFVEEKQKLHCLNTLFCK 267

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++ A V    K + E       +   + Q  R+      R+G  R  +++
Sbjct: 268 LQINQAIIFCNSVARVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSS 327

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 328 DLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIEK 387

Query: 362 EANVSVVWEPA 372
           E N  +   P 
Sbjct: 388 ELNTEITSIPV 398


>gi|153215146|ref|ZP_01949844.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124114870|gb|EAY33690.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 464

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RAYQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|15600973|ref|NP_232603.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121586756|ref|ZP_01676539.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727729|ref|ZP_01680817.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147672261|ref|YP_001215860.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153816784|ref|ZP_01969451.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|227811827|ref|YP_002811837.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229506632|ref|ZP_04396141.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229510570|ref|ZP_04400050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229517298|ref|ZP_04406743.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229605109|ref|YP_002875813.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254850597|ref|ZP_05239947.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745988|ref|ZP_05419935.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262162174|ref|ZP_06031189.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|262167359|ref|ZP_06035068.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|298500057|ref|ZP_07009863.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9657596|gb|AAF96116.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549053|gb|EAX59090.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121629946|gb|EAX62356.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126512587|gb|EAZ75181.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|146314644|gb|ABQ19184.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227010969|gb|ACP07180.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227014875|gb|ACP11084.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345334|gb|EEO10307.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC9]
 gi|229353015|gb|EEO17955.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|229356983|gb|EEO21901.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae BX 330286]
 gi|229371595|gb|ACQ62017.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MJ-1236]
 gi|254846302|gb|EET24716.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255735742|gb|EET91140.1| ATP-dependent RNA helicase RhlE [Vibrio cholera CIRS 101]
 gi|262024243|gb|EEY42935.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC27]
 gi|262028249|gb|EEY46907.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae INDRE 91/1]
 gi|297542038|gb|EFH78089.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 451

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
 gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
          Length = 414

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     + EA+ E G+   T VQ   +   L  +DVL SA TG+GKT AF +  
Sbjct: 2   IKTFADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +   A     L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQFLQDFPRK--KAGPARILILTPTRELAMQITEQARELAKYTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLLEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     +     +  K+   VN     R+   I          +    ++ 
Sbjct: 180 RKQTMLFSATLEGRGVEGFTADLLKEPAEVNAEPPRRERKKISQWYHRADDMNHKLELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    ++ AIVF  TR  ++    VL         + GE+ Q  R+NA+   RDG   +
Sbjct: 240 AILTQQSERAIVFFKTRERLAEVRAVLESAQIACSWIQGEMPQDRRNNAISRFRDGSVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+PD+  VI+ +L  + +  LHR GRT RAG+KG+++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDVPDVSHVINFDLPRSADVYLHRIGRTARAGKKGIAISLVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYLKEDIKE 371


>gi|149189294|ref|ZP_01867580.1| DNA and RNA helicase [Vibrio shilonii AK1]
 gi|148836853|gb|EDL53804.1| DNA and RNA helicase [Vibrio shilonii AK1]
          Length = 477

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 208/453 (45%), Gaps = 9/453 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  A+ + GY   + +QE  +   +  KDV+ +AQTG+GKT  F L L  
Sbjct: 2   SFESLGLSTPILRAIQDLGYEKASPIQEQAIPAIIEGKDVMAAAQTGTGKTAGFALPLLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +    +   AL + PTRELA QV   +        +      GGV ++ +   
Sbjct: 62  RL--NSGQRVKGNHIRALILTPTRELAAQVHESVFKYSTNLPLTSQCVFGGVKINPQMLK 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ ILD  PK R
Sbjct: 120 LRKGCDVMVATPGRLLDLYQQNAIKFSQLEVLVLDEADRMLDMGFFRDIKKILDLLPKNR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LAK    + + V++   N     ++    +     +   +  ++ 
Sbjct: 180 QNLLFSATFSNEIRDLAKGLVNNPIEVSVTPPNSTTKLVEQSLYVTDKKQKPAMLAKLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VFC T+   +R  + L       +A+ G  SQ  R+ AL+  + G+ RV +A
Sbjct: 240 DGSWKQVLVFCKTKHGANRLARFLEGKKITALAIHGNKSQGARTKALEHFKTGQIRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P L  V++ +L    E+ +HR GRTGRAG  G +  ++  +  +    + 
Sbjct: 300 TDIAARGLDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGETGKAYSLVCADEAKELFGIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R     +        + +       + +  L    I+  + K       +   +  A+G 
Sbjct: 360 RLIGKLIDRFELEGFKPVNA-----VPESKLDTRPIKPKKPKKPKKPKQEGQEKSTASGH 414

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
            R  +     P +    +     D    ++   
Sbjct: 415 GRADKPRSEKPRKPRKFNTKRNSDGESGNANHR 447


>gi|550329|emb|CAA57417.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 582

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/414 (27%), Positives = 203/414 (49%), Gaps = 6/414 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   L +  Y   TS+Q   +   +  +D++  A+TGSGKT+AF L +   +LA+ 
Sbjct: 29  LTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ- 87

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P    +AL ++PTRELA+Q+  E +      G+  A   GG S+  +  +L+ GA 
Sbjct: 88  PKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGAD 147

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +     +  N+  +  +VLDEAD M D+GF   I  I+DS    R+ +
Sbjct: 148 IVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTI 207

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT  P +  +AK      + +     +   SDI+    +     R   ++ +L    
Sbjct: 208 MFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWY 267

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K   ++F + + +     + L+   +Q ++L G   Q +R   +   ++    + IAT 
Sbjct: 268 HKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATP 327

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+ DL LV++ +   + E+ +HR GRTGRAG +G +   I  + +R +  + + 
Sbjct: 328 LASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKA 387

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              S    P   +  + +   ++  +    L +  G   +      A+ D + I
Sbjct: 388 LEQSGSKVPD-ELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEEDKKNI 440


>gi|303288181|ref|XP_003063379.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455211|gb|EEH52515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 513

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 11/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + + ++   + N T VQ+  +   L  +D++  AQTGSGKT AF   +   LL  
Sbjct: 59  DFGAAVNKNIARCKFKNPTPVQKYAIPISLARRDLMACAQTGSGKTAAFCFPIIYGLLDR 118

Query: 66  N----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R    + PLAL IAPTRELA+Q+  E      +TGV   V  GG    ++ R++
Sbjct: 119 GLAGSQRGGRKTFPLALVIAPTRELAIQIHEESRKFAYQTGVASCVIYGGAPAAQQFREM 178

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I++       
Sbjct: 179 ERGCDILVATPGRLIDLVDRAKISLSEVRYLALDEADRMLDMGFEPQIRQIVEQRDMPPT 238

Query: 181 ---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + ++FSAT    I  +A ++ KD + + +      H+ I  +   +   +   +++ 
Sbjct: 239 GERQTMLFSATFPREIQRMASDFLKDYIFLTVGRVGSSHTLITQQIEYLRSYEDKKSMLM 298

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L +      +VF  T+    +    L+   F   ++ G+ +QQER  AL+  R GR  +
Sbjct: 299 DLVHAVKGLTLVFVETKRGADQLEDWLSREGFPSTSIHGDRTQQEREYALKSFRSGRTPI 358

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QR 354
            +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG+KG++            R
Sbjct: 359 LVATDVAARGLDIPHVTHVINFDLPSDIDDYVHRIGRTGRAGKKGLATAFFTDKDAGLAR 418

Query: 355 RAERLFREANVSVV 368
               L  EA   V 
Sbjct: 419 SMIELMTEAGQEVP 432


>gi|296201830|ref|XP_002748194.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 isoform 1
           [Callithrix jacchus]
          Length = 614

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|59713557|ref|YP_206332.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481805|gb|AAW87444.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 434

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 188/365 (51%), Gaps = 1/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   ++E G+   T +QE  +   L+  DVL  AQTG+GKT AFGL L   L+   
Sbjct: 24  LTKQILTTVAELGFKEATPIQEQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESP 83

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R   +    +L + PTRELA QV   L      T + V V  GG S++ ++ +L  GA
Sbjct: 84  IERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGA 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K + ++  + +VLDEAD MLD+GF  DI+ IL   P +R+ L F
Sbjct: 144 DILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFF 203

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  +A         V +   N     ++     V    +   +  ++     +
Sbjct: 204 SATFSKKVREIAYYMLNKPKEVQVTPTNSTAETVEQMVYPVDKHRKSELLAYLIGSRNWQ 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L +   +  +++G+ SQ  R  AL+  + G+ R  IATDVAA
Sbjct: 264 QVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ EL    E+ +HR GRTGRAG  G ++ ++  + +   + +    + 
Sbjct: 324 RGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYLLKAIETLLDT 383

Query: 366 SVVWE 370
            +  E
Sbjct: 384 RLPQE 388


>gi|291165173|gb|ADD81191.1| vasa [Euthynnus affinis]
          Length = 640

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 187/380 (49%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 205 TFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 264

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 265 QLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTGHQ 324

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R++  G ++V GTPGRL D I    + ++ L+ +VLDEAD MLD+GF  D+        
Sbjct: 325 IREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVSSPG 384

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 385 MPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKR 444

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 445 EQLLDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 504

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     + 
Sbjct: 505 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDA 564

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A   V 
Sbjct: 565 DGQLARSLVTVLSKAQQEVP 584


>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 473

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 213/380 (56%), Gaps = 8/380 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   I +A++E+GY   T +Q   +   L   D++ +AQTG+GKT AF L +  
Sbjct: 29  TFADFGLDPKIQKAVAEQGYSIPTPIQAQSIPHVLAGSDLMGAAQTGTGKTAAFVLPIIQ 88

Query: 61  TLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +L   ++  SPA  P+ AL + PTRELAVQV          T +  AV  GGV +  + 
Sbjct: 89  QILRHASNSASPARHPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQV 148

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  I++ TPGRL DHI  K  N+S ++ +VLDEAD MLD+GF  D++ I+D  P 
Sbjct: 149 AILRNGVEILIATPGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIIDLIPA 208

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT SP I  LA++Y +  V V +A +N     +     +V+  D+  AIV +
Sbjct: 209 QRQTLLFSATFSPEIKKLAQSYLRTPVTVEVARQNAAADTVKQVVHMVSSGDKQRAIVKV 268

Query: 239 LRYHG----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           L        ++  I+F ++R   ++  + L     +  A+ G+ SQ ER+  L   + G 
Sbjct: 269 LEARTRLGLSRQCIIFTNSRLGCAKLARALERDGIKAGAIHGDKSQGERTLTLDAFKSGA 328

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATDVAARG+D+PD+  VI+ EL  N E+ +HR GRTGRAG KG ++ ++  + +R
Sbjct: 329 IEALVATDVAARGLDIPDMPCVINHELPYNAEDFIHRIGRTGRAGSKGDAIALVDASEKR 388

Query: 355 RAERLFREANVSVVWEPAPS 374
             + + +     +  +P P 
Sbjct: 389 LLDDIEKLMKRKLDVKPLPE 408


>gi|4758138|ref|NP_004387.1| probable ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|300793700|ref|NP_001178324.1| probable ATP-dependent RNA helicase DDX5 [Bos taurus]
 gi|73965213|ref|XP_850467.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 2 [Canis
           familiaris]
 gi|109116805|ref|XP_001109860.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Macaca
           mulatta]
 gi|297487273|ref|XP_002696148.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos
           taurus]
 gi|301778273|ref|XP_002924553.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
           [Ailuropoda melanoleuca]
 gi|332227004|ref|XP_003262677.1| PREDICTED: probable ATP-dependent RNA helicase DDX5 [Nomascus
           leucogenys]
 gi|129383|sp|P17844|DDX5_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|35220|emb|CAA36324.1| unnamed protein product [Homo sapiens]
 gi|38318|emb|CAA33751.1| unnamed protein product [Homo sapiens]
 gi|2599360|gb|AAB84094.1| RNA helicase p68 [Homo sapiens]
 gi|16359122|gb|AAH16027.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
 gi|30582725|gb|AAP35589.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
           68kDa) [Homo sapiens]
 gi|61362303|gb|AAX42197.1| DEAD box polypeptide 5 [synthetic construct]
 gi|61362310|gb|AAX42198.1| DEAD box polypeptide 5 [synthetic construct]
 gi|119614608|gb|EAW94202.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|119614609|gb|EAW94203.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5, isoform CRA_a [Homo
           sapiens]
 gi|123979568|gb|ABM81613.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|123994197|gb|ABM84700.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [synthetic construct]
 gi|168277560|dbj|BAG10758.1| ATP-dependent RNA helicase DDX5 [synthetic construct]
 gi|197692215|dbj|BAG70071.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
 gi|296476161|gb|DAA18276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 isoform 2 [Bos taurus]
          Length = 614

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|302654809|ref|XP_003019203.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
 gi|291182911|gb|EFE38558.1| hypothetical protein TRV_06752 [Trichophyton verrucosum HKI 0517]
          Length = 403

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 30  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 90  VID------TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 144 LEHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 204 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 264 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 324 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 383

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 384 ELYYSTQIDEMPM 396


>gi|220933542|ref|YP_002512441.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219994852|gb|ACL71454.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 432

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 203/389 (52%), Gaps = 13/389 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + + + G+   T +Q   L   L+  DV   AQTG+GKT AF +A  + LL +
Sbjct: 21  DLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQTGTGKTAAFLIAAFNRLLRD 80

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   +   AL +APTRELA+Q+ ++   L A TG+ + +  GG    ++R+ L +G
Sbjct: 81  PAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLKLGLAYGGTDYDKQRQQLVDG 140

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRM 182
             I++GTPGR+ D+ + K  ++  ++ +VLDEAD M DLGF  DI F     + P +R+ 
Sbjct: 141 VDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLGFIKDIRFLLRRMTPPTERQS 200

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +  +V    E      +       A  ++   ++ +++  
Sbjct: 201 MLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQVVYYPANPEKIPLLLGLMKRI 260

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   ++VF +T+    +    L  +  +V  LSG++ QQ+R   L+   +   +V +ATD
Sbjct: 261 GPSRSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQKRQRLLKQFENDEFQVLVATD 320

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +PD+  V + +L  + E+ +HR GRTGRAG +G +V    ++       + + 
Sbjct: 321 VAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEGDAVSFACEDSAFYLPEIEQY 380

Query: 363 ANVSVVW---------EPAPSVE-AIRER 381
               +           +PAP  +  IRER
Sbjct: 381 IGFKIEAGAIDPELLVKPAPPAKREIRER 409


>gi|118589105|ref|ZP_01546512.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
 gi|118438434|gb|EAV45068.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Stappia aggregata IAM 12614]
          Length = 505

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 131/451 (29%), Positives = 209/451 (46%), Gaps = 8/451 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+   GY   T++Q   +   L  +D+L  AQTG+GKT +F L + + L    
Sbjct: 32  LSEKVLAAVEAAGYKEPTAIQSGAIPQVLERRDILGIAQTGTGKTASFTLPMLTLLEKGR 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV            + +A+ IGGVS   + + L  G  
Sbjct: 92  AR---ARMPRTLILEPTRELAAQVEENFSRYGTNHKLNIALLIGGVSFSEQDKKLDRGTD 148

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 149 VLIATPGRLLDHFERGKLLLQGVEILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYHG 243
           AT+ P I  L + + ++  R+ +A  +    ++              R      +     
Sbjct: 209 ATMPPEIQRLTETFLQNPARIEVAPTSSTAENVAQFLKATDSKDYEKRAALRDLLEGAED 268

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAIVFC+ +  V+   + L  H + V AL G++ Q+ R   L   R G  ++ +A+DV
Sbjct: 269 LQNAIVFCNRKRDVTTVYRSLERHEYNVGALHGDMDQRTRMMMLDNFRKGTIKLLVASDV 328

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++ SN E+ +HR GRTGRAGRKG +  ++    Q+  + +    
Sbjct: 329 AARGLDIPEVSHVFNFDVPSNAEDYVHRIGRTGRAGRKGTAFTLVTGEDQKYLDAIQTLI 388

Query: 364 NVSVVW--EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W  +      A +ER A+R    P        D +       ++   +      +
Sbjct: 389 KKDIDWLGDAIDFEAAAQERKARRKAGKPSRNARSSNDNEATDAKPSSRRRSQSKPREVV 448

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
                 L       PVS +  R   R     
Sbjct: 449 EEQVEELPEMLNPIPVSNLPQRQSGRRSRNE 479


>gi|297704172|ref|XP_002828993.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Pongo
           abelii]
          Length = 483

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 121/478 (25%), Positives = 198/478 (41%), Gaps = 23/478 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P  R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPAHRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +       +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL----LAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++      L   D
Sbjct: 363 IEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           P+  A   A   +I +      E++          R     R  +   GS      S 
Sbjct: 423 PDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPPGSHSGPVPSQ 480


>gi|238759754|ref|ZP_04620912.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
 gi|238701986|gb|EEP94545.1| ATP-dependent RNA helicase rhlE [Yersinia aldovae ATCC 35236]
          Length = 452

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQITQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|47028621|gb|AAT09162.1| DEAD box protein AxVH [Ambystoma mexicanum]
          Length = 724

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 182/363 (50%), Gaps = 9/363 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+P+ +   +S+ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 295 TFEEANLPETLYNNISKAGYTKLTPVQKYSIPIVLARRDLMACAQTGSGKTAAFLLPILA 354

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+ +      S    P  + +APTREL  Q+  +      +T +   V  GG       
Sbjct: 355 HLMQDGIPPPTSELQEPEVIIVAPTRELINQIFLDARKFAYRTCIKPVVVYGGTQTIHSL 414

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GF  D++ ++ S   
Sbjct: 415 RQIYQGCNILCATPGRLIDIIRREKIGLTKLRYLVLDEADRMLDMGFGPDMKTLVTSPGM 474

Query: 179 KRRMLMFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             +    +   S       +       + D + V +       +D+  + + V   ++ +
Sbjct: 475 PTKEERQTLMFSATFPENIQSLAREFLKPDYLFVTVGQVGGACADVQQKILEVDQYEKKD 534

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G
Sbjct: 535 KLVEILQGLGKERTMVFVGTKKMADYLTTLLCQENISATSIHGDRLQREREEALADFRFG 594

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +AT+VAARG+D+ +++ VI+ +LS N E  +HR GRTGR G  G ++     N  
Sbjct: 595 KCHVLVATNVAARGLDIENVQHVINYDLSDNIEEYVHRIGRTGRCGNVGKAISFFHSNQN 654

Query: 354 RRA 356
           R  
Sbjct: 655 RDL 657


>gi|194216755|ref|XP_001495197.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX5
           (DEAD box protein 5) (RNA helicase p68) [Equus caballus]
          Length = 614

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|194290281|ref|YP_002006188.1| dead/deah box helicase/ATP-dependent RNA helicase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224116|emb|CAQ70125.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP-DEPENDENT
           RNA HELICASE (C-terminal)(rhlE-like) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 624

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 208/396 (52%), Gaps = 20/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  ALS+  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L     +    
Sbjct: 56  LDAAILRALSDLNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEMP 115

Query: 63  ----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIG 110
                       +  R  PA A P  L + PTRELA+QV             +  A  +G
Sbjct: 116 APQRATEPAKRMKGKRPRPAPAQPALLVLTPTRELALQVTEAAAKYGRNLRRIVCASILG 175

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+   ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+
Sbjct: 176 GMPYPKQLAMLAKMPDILVATPGRLLDHIDAGRIDLSALQMLVFDEADRMLDMGFADDID 235

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALS 229
            I++++P  R+ LMFSAT+   I  LA    KD  R+ IA+     S I+ R      +S
Sbjct: 236 AIVNATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMS 295

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  
Sbjct: 296 HKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTA 355

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++ 
Sbjct: 356 LRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINLVN 415

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
            N   +  R+ R  N  V    A  +E +  R A +
Sbjct: 416 HNDMFQWRRIERFTNQRV---DASVIEGLEPRRAPK 448


>gi|255955551|ref|XP_002568528.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590239|emb|CAP96415.1| Pc21g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 416

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F ++   
Sbjct: 26  TFEDMHLKESLLRGVYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISTLQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  IID------TVVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V      + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLADKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
          Length = 595

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 183/371 (49%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   TS+Q       L  +D++  A TGSGKT+++ L     + ++ 
Sbjct: 136 FPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIVHINSQ- 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S    P+AL +APTRELA Q+ +  +     +G+      GG     + RDL  G  
Sbjct: 195 PKLSRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIRNTCLYGGAPKGAQARDLDGGVE 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+ LM+S
Sbjct: 255 IVIATPGRLLDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWS 314

Query: 187 ATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           AT    +  LA+++ KD  ++N      S N     I          ++ + ++  +   
Sbjct: 315 ATWPKEVKNLAEDFLKDYAQINVGSLQLSANHNILQIIDVCQDYEKENKLSTLLKEIMAE 374

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A + +ATD
Sbjct: 375 SENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAPILVATD 434

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +      N   +A  L   
Sbjct: 435 VAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPNNANKANDLIQV 494

Query: 360 FREANVSVVWE 370
            +EAN  +  +
Sbjct: 495 LKEANQVINPK 505


>gi|325119657|emb|CBZ55210.1| ATP-dependent RNA helicase DDX55,related [Neospora caninum
           Liverpool]
          Length = 569

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 128/490 (26%), Positives = 218/490 (44%), Gaps = 20/490 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + + +AL+E     LT +Q   +   L  +DVL +A+TGSGKT+AF +     
Sbjct: 87  FESLDICEPVKKALAEMKMERLTEIQAKAIPRLLEGRDVLGAAKTGSGKTLAFLVPAVEL 146

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +F P +    + I+PTREL++Q+      L       + + IGG +   E   L
Sbjct: 147 LY--QVKFLPRNGTGVIVISPTRELSLQIFDVAAELSKFLPQTLGLVIGGANRKHEVEKL 204

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           Q G +I+V TPGRL DH++       S+L ++V+DEAD +L +GF +++  IL   P+ R
Sbjct: 205 QKGVNILVATPGRLLDHLQNTKGFQYSNLLSLVIDEADRILQIGFEEEMNAILQMLPQTR 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT S  +  LA+   K  V V +         I    V+    +R   +   L+
Sbjct: 265 QTCLFSATQSAKVADLARLSLKKPVFVEVKDTVATVRGIQQGYVVCPAEERFLLLFTFLK 324

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++          + G+  Q  R +      +    + + 
Sbjct: 325 KNREKKIMVFFSSCMSVRFHDELFNYIDLPTTCIHGKKKQNARMSTYYDFCNAEKGILLC 384

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT R AG  G ++  +         R 
Sbjct: 385 TDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMAEEIGFL-RY 443

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            ++A V +     PS + A  +   +R+++   +L     D  +      A H  + I  
Sbjct: 444 LKQAGVPLNEYTFPSNKIANVQSQLERLIEKNYYLHKASQDAYRSYLHAYASHTLKDIFN 503

Query: 417 --AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
             A    R+ RA G   P  +       GR +    ++ F   G                
Sbjct: 504 VHALDLQRVARAFGFSVPPRVELNLKAKGRTKVDKKTQRFSGTGHKFSASNPY------- 556

Query: 474 GSKQKAEARW 483
           G ++  + R 
Sbjct: 557 GKREAGDRRQ 566


>gi|55562721|gb|AAH86320.1| Ddx5 protein [Mus musculus]
          Length = 648

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 133 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 193 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 252 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 311

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 312 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 371

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 372 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 431

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 432 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 491

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 492 VLREANQAINPKLLQLVED 510


>gi|320162646|gb|EFW39545.1| ATP-dependent RNA helicase DRS1 [Capsaspora owczarzaki ATCC 30864]
          Length = 924

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 124/480 (25%), Positives = 235/480 (48%), Gaps = 22/480 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+S   + N T +Q A + P L  +D++  A+TGSGKT AF L +   LL  
Sbjct: 348 NLSRPLLRAISSLNFANATDIQAATIPPALMGRDLVACAKTGSGKTAAFLLPVLERLLYR 407

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + +PAS    L ++PTRELAVQ     E L   T + +++  GG S  R++ +L+   
Sbjct: 408 Q-KTNPAS--RVLVLSPTRELAVQCHAMGEKLAKFTDIRMSLICGGFSTKRQQAELRAHP 464

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            ++V TPGRL DH     G ++  ++ +++DEAD +L++GF+++++ I+      R+ ++
Sbjct: 465 DVIVATPGRLIDHLQNSPGFDLEGIEVLIMDEADRLLEMGFKEEVDEIIRQCSVSRQTML 524

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRY 241
           FSAT++  +  L        +RV I       +++     R       +++  ++ + + 
Sbjct: 525 FSATMTDEVENLIALSMNKPLRVFINKNTDTATNLTQEFVRVRPQREKEKEAIVLAVCKR 584

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  ++    R   +      +   L G+L+Q +R  +L+  ++GR    +AT
Sbjct: 585 SFHTKTIVFFRSKQGAHRAKVIFGLFGLKAAELHGDLNQLQRLESLEAFKEGRVDFLLAT 644

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E V++A++ +     +HR GRT RAGR G S+ ++ +  ++  + + +
Sbjct: 645 DLASRGLDIVGVETVVNADMPNTLTQYIHRVGRTARAGRAGRSLSLVCEGERKLLKEIVK 704

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A V +     PS   + E+ + +I      + +I   EK+   +L A+ +  K  A  +
Sbjct: 705 HATVPLSSRSIPS--DVIEKFSTKIRGASKDIAAIMKAEKEEKMLLQAEMEAAK--ASNM 760

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
             H   + +    T       +   +++S+    GG   D            G  Q+A  
Sbjct: 761 MEHEKEIYSKPARTWFQDALAKKTSKENSKVAHAGGAVADK-----------GKTQQARP 809


>gi|323352003|gb|EGA84542.1| Dbp1p [Saccharomyces cerevisiae VL3]
          Length = 551

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 95  LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 154

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 155 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 214

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 215 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 274

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 275 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 334

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 335 XLLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 394

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 395 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 454

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 455 NIVKGLMEILNEANQEVP 472


>gi|223983404|ref|ZP_03633590.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
 gi|223964576|gb|EEF68902.1| hypothetical protein HOLDEFILI_00870 [Holdemania filiformis DSM
           12042]
          Length = 474

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 144/540 (26%), Positives = 237/540 (43%), Gaps = 71/540 (13%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +F+ +   + +A+    Y   T VQE ++   L  +D LV A+TGSGKT A+ L +   
Sbjct: 5   NVFDLLEADLRQAVEALHYTQPTPVQEQVIPAFLEGRDCLVQAKTGSGKTAAYALPVCQQ 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              E+        P AL +APTRELA Q+ +E++       +  A  +G   +  ++  L
Sbjct: 65  CHFED------RLPQALILAPTRELADQITQEIQNFSLFRRLTCARLVGRQPMKSQKYQL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    IV+GTPGR+ DHI    L++S LK +VLDEAD+M  LG  + +  IL+  P   +
Sbjct: 119 KQRVQIVIGTPGRVWDHIEQGTLDLSQLKMIVLDEADQMFSLGLTETVHQILEQLPSPIQ 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+SP I  LA+    D + + I S  + + +I   ++ V+ +++   ++++   
Sbjct: 179 TCLFSATLSPEILQLAEITVHDPLTIQIDSPCQTNQNIRLTSLTVSNTEKLTGLLHVFST 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A +AIVFC  + +     + L +      AL G + Q +R   L+  R G+ R+  AT
Sbjct: 239 IQAPSAIVFCDRQMTAEEVAEQLKKRGLCADALHGGMEQDQRFAVLKQFRQGQLRILCAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L L++H +L  N E+ +HR GR GR  + G SV ++  + + R      
Sbjct: 299 DVAARGLDIDGLSLIVHWDLPLNLESFIHRCGRCGRIDQLGTSVALLTPSQKSRYSSFLE 358

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                             E   +    DP    S     K        K       A  L
Sbjct: 359 TL----------------ETQDEAFELDPFDDHSGLAHWKTKNQRQPEK-------AAEL 395

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
           + ++A +                                          +  G + K   
Sbjct: 396 KQNKATIL-----------------------------------------IRAGRQHKLRP 414

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
              +  LC S+G + + IG I VQ  +TF+ +       L RT +L    +L+ +   + 
Sbjct: 415 GDFVGALC-SAGYSAEQIGTIEVQERVTFITLIQADPQPLIRTGELSVKGKLRRVERARS 473


>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 441

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 192/370 (51%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A +++GY   + +Q   +   L  +DV+ +AQTG+GKT  F L L   L AEN
Sbjct: 8   LSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQRL-AEN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L +APTRELA QV   +           AV  GGV ++ +   L+ G  
Sbjct: 67  PRT--GKGPRVLILAPTRELAAQVHDSVALYSRYMPTKSAVVFGGVKINPQMMKLRKGLD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 125 VLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    + V+V +A+ N     I      V  S +   +  ++R +G + 
Sbjct: 185 ATFSNEIRTLAEGLLDNPVQVEVAARNTAAESIKQSVYPVDQSQKTALLSKLVRDNGWEQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T+ L        A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 245 VLVFTRTKHGANRLTQKLERDGITAAAIHGNKSQGARTRALADFKQGEVRVLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++  +  +    + R     
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKMLAGIERLIKKQ 364

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 365 LPRKSVEGFE 374


>gi|149244712|ref|XP_001526899.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032453|sp|A5DWJ1|FAL1_LODEL RecName: Full=ATP-dependent RNA helicase FAL1
 gi|146449293|gb|EDK43549.1| eukaryotic initiation factor 4A-12 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 399

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 194/372 (52%), Gaps = 9/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  +   + + +   G+   +++Q   +   +  +D +  AQ+G+GKT  F + +  
Sbjct: 27  TFESMRLKPELLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLE 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       S +    AL ++PTRELA Q+   ++ L     +    CIGG +V  + + 
Sbjct: 87  VLD------SKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKR 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  IV GTPGR+ D I+ + L+  H+K ++LDEADE+   GF++ I  I    P   
Sbjct: 141 LQQGQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGV 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNIL 239
           ++++ SAT++  +  +   +  D V++ +  E    S I    +       + + + ++ 
Sbjct: 201 QVVVVSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+  T  + +  F VVA+ G++ Q+ER   +   R G +RV I
Sbjct: 261 DNLTITQAVIFCNTKIKVNWLTDQMRKQNFTVVAMHGDMKQEERDAIMNDFRSGNSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG ++ ++ ++     + L
Sbjct: 321 STDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGTAINLLTKSDTIELKAL 380

Query: 360 FREANVSVVWEP 371
            +  +  +   P
Sbjct: 381 EKYYSTKIKEMP 392


>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
 gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
          Length = 439

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 188/399 (47%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R     +P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGSPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|71282546|ref|YP_268161.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71148286|gb|AAZ28759.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 401

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 186/368 (50%), Gaps = 3/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---L 63
           +   I  A+++ GY   T++Q+  +   L  KD++ +AQTG+GKT +F L L   L    
Sbjct: 8   LSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQY 67

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            E  +   A    AL + PTRELAVQV   +        +      GGV    +++ L  
Sbjct: 68  KETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRLIW 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D    + L+   L  +VLDEAD MLD+GF DDI  I++  P+ R+ L
Sbjct: 128 GVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHRQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LAK      V ++I ++      I+   V V  +++   + +I+    
Sbjct: 188 LFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIITTQN 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F  T+   ++    L +      ++    +Q  R   L   + G+ +  +AT +
Sbjct: 248 WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKFLVATAI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L  VI+ +L +  ++ +HR GRTGRAG  G ++ ++ ++  R    +    
Sbjct: 308 AARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFRELCAIESRL 367

Query: 364 NVSVVWEP 371
              +  + 
Sbjct: 368 GHIIERKE 375


>gi|24585582|ref|NP_610090.1| CG9253 [Drosophila melanogaster]
 gi|7298752|gb|AAF53963.1| CG9253 [Drosophila melanogaster]
          Length = 507

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 117/420 (27%), Positives = 213/420 (50%), Gaps = 9/420 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 68  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 127

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 128 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 181

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 361

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 362 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 421

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            +         V A++ER A+      L L  ++              D E       R+
Sbjct: 422 QLTLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTRGGHKRGGDTHDDSENFTGARKRM 481


>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 443

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A +++GY   + +Q+  +   L  KDV+ +AQTG+GKT  F L L   L AEN
Sbjct: 8   LSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQRL-AEN 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P AL + PTRELA QV   +           AV  GGV ++ +   L+ G  
Sbjct: 67  PRT--GKGPRALILTPTRELAAQVHDSVNLYSKYVPTKAAVVFGGVKINPQMMKLRKGLD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 125 VLVATPGRLMDLYQQNAVRFNEVEILVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA+    + V+V +A+ N     +      V  S +   +  ++R +    
Sbjct: 185 ATFSNEIRTLAQGLLDNPVQVEVAARNTTAEKVKQSVYPVDQSQKTALLSKLVRDNAWDQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 245 VLVFTRTKHGANRLTQKLEKDGITAAAIHGNKSQGARTRALADFKAGEVRVLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++  +  +    + +     
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADEGKLLAGIEKLIKKQ 364

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 365 LPRKEVEGFE 374


>gi|195443116|ref|XP_002069285.1| GK21047 [Drosophila willistoni]
 gi|194165370|gb|EDW80271.1| GK21047 [Drosophila willistoni]
          Length = 507

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 212/397 (53%), Gaps = 9/397 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 62  LNETLCQACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILQALLENP 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 122 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 175

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 176 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 236 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 295

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 296 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 355

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 356 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGRAITMVSQYDIELYQRIEHLLGK 415

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +         V A++ER A+      L L  I+ ++
Sbjct: 416 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDIEENQ 452


>gi|190892959|ref|YP_001979501.1| ATP-dependent RNA helicase [Rhizobium etli CIAT 652]
 gi|190698238|gb|ACE92323.1| ATP-dependent RNA helicase protein [Rhizobium etli CIAT 652]
          Length = 565

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 199/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++   + I   L + G    T +QE  +   L+ +D++  AQTG+GKT AFGL L
Sbjct: 22  LTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIGLAQTGTGKTAAFGLPL 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R         L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 82  IEKLLADERRPD-NRTTRTLILAPTRELVNQIADNLKKFIRKSPLRINVVVGGVSINKQQ 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++V TPGRL D +  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 141 LQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ ++FSAT+  AI  LA  Y  D V+V +    +    ++     VA  + +   +  
Sbjct: 201 KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    AIVF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 261 SLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  +   
Sbjct: 321 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 380

Query: 358 RLFREANVSVV 368
            + R   + + 
Sbjct: 381 DIERLMGIDIA 391


>gi|224142804|ref|XP_002324737.1| predicted protein [Populus trichocarpa]
 gi|118481206|gb|ABK92554.1| unknown [Populus trichocarpa]
 gi|222866171|gb|EEF03302.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 9/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  
Sbjct: 41  TFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R 
Sbjct: 101 QLDYD------VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K 
Sbjct: 155 LSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 214

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    +
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDI 394

Query: 360 FREANVSVVWEP 371
            R  NV+V   P
Sbjct: 395 QRFYNVTVEELP 406


>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
 gi|154089130|gb|EDN88174.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
           43184]
          Length = 427

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 195/371 (52%), Gaps = 8/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L    ++  T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   DLEEAVLDGLDAMNFLETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQ 122
           +    PA+A  A+ +APTRELA Q+ +++E       V          G++  +++R ++
Sbjct: 64  SKGLHPANAINAIIMAPTRELAQQIDQQIEGFTYFVPVSAVAVYGGTDGIAWEQQKRGME 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IV+ TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + 
Sbjct: 124 MGADIVIATPGRLLSHIKLGTVDLSQVSFFVLDEADRMLDMGFYDDIMQVYKLLPATCQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +MFSAT+ P I TLA+   K+   V   + +R    I   A +     +   + ++    
Sbjct: 184 IMFSATMPPKIRTLAQTILKNPEEV-KIAISRPPETIMQTAYVCYDMQKLRILEDLFSKS 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F S++  V      L    F V A+  +L Q +R   ++  ++GR  + +ATD
Sbjct: 243 RPQRVIIFSSSKMKVKELASTLKRMKFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFR 361
           V +RGID+ D++LVI+ ++  +PE+ +HR GRT R    +G+++  I    Q + +R+  
Sbjct: 303 VVSRGIDINDIKLVINFDIPHDPEDYVHRIGRTARGTNGEGLAITFISTEEQFQFKRIEE 362

Query: 362 EANVSVVWEPA 372
             +  +   P 
Sbjct: 363 FLDKEIYKIPV 373


>gi|270016294|gb|EFA12740.1| hypothetical protein TcasGA2_TC002367 [Tribolium castaneum]
          Length = 668

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ I + + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 82  NFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVHINNQ 141

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+AL +APTRELA Q+ +      + T V      GG     + RDL+ G 
Sbjct: 142 Q-RPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLERGV 200

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+
Sbjct: 201 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMW 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA+ +  D ++VNI     + N     I          ++   ++  +  
Sbjct: 261 SATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIGS 320

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+  V   TK +    +  +++ G+ SQ ER   L   R G++ + +AT
Sbjct: 321 DSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVAT 380

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N QR+A+ L  
Sbjct: 381 DVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKDLIA 440

Query: 360 -FREANVSVVWE 370
              EA  +V  E
Sbjct: 441 VLEEAGQNVSAE 452


>gi|239995610|ref|ZP_04716134.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
          Length = 483

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 192/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ +RG+   + +QE  +   L+ KDVL +AQTG+GKT  FGL +   L+   
Sbjct: 8   LAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQRLMEGQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ G  
Sbjct: 68  P--VSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI  +L   P++R+ L+FS
Sbjct: 126 VLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIRRVLKLLPQERQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  IT LAK   ++ V ++ A  N     +    V +  S +  A++ +++    + 
Sbjct: 186 ATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQQKWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L        A+ G  SQ  R+ AL   ++G  +V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L +V++ +L +   + +HR GRTGRAG  G +   +     +  + +       
Sbjct: 306 GIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIETLIQKL 365

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 366 LPRETLEGFE 375


>gi|197104230|ref|YP_002129607.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
 gi|196477650|gb|ACG77178.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
           zucineum HLK1]
          Length = 470

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 120/371 (32%), Positives = 188/371 (50%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + + +AL++ GYVN T +Q   +   +  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTQFTDLGLAKPLLKALADEGYVNPTPIQAQAIPGVMAGRDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L AE+ R +P  +   L ++PTRELA Q+    +      G+ VAV  GGV    + 
Sbjct: 61  LHRL-AEDRRPAPRRSARVLVLSPTRELATQIAESFKAYGRHLGLSVAVIFGGVKYGPQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  ++V TPGRL DH++ K + +  ++  VLDEAD+MLD+GF   I  I+   PK
Sbjct: 120 RALAGGVDVLVATPGRLIDHLQEKSVVLEGVETFVLDEADQMLDMGFIVPIRRIVKFLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L FSAT+   I  L          +V +   +     I+ R + V    +   +  
Sbjct: 180 RRQNLFFSATMPAEIEKLTGEILNPNPLKVTVTPPSTTVERINQRVLFVEQQRKRALLAE 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      K  IVF  T+    R  + L +   +  ++ G+ SQ +R  AL   + G  R 
Sbjct: 240 LFDDASFKRVIVFTRTKRGADRVARGLEQVGVEAASIHGDKSQGQRERALAAFKAGDVRA 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  V+  EL + PE  +HR GRT RAG  G +V     + +   +
Sbjct: 300 LVATDIAARGIDIDAVSHVVQFELPNVPEAYVHRIGRTARAGADGSAVAFCADDERNLLK 359

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 360 DIEKVTKQRIP 370


>gi|308807515|ref|XP_003081068.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
 gi|116059530|emb|CAL55237.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
          Length = 1030

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 193/395 (48%), Gaps = 16/395 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K + +  +   I E +   G+     +Q   L   +  +D +  A+TGSGKT+A+ L +
Sbjct: 329 IKTWAHAGLSGRIHELIRRCGFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAYILPM 388

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ + + PTREL  Q+G+E +      G       GG  +  + 
Sbjct: 389 LRHINAQEP-LKNGDGPIGMIMGPTRELVTQIGKEAKRYGKALGFNAVSVYGGSGIAAQI 447

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +L+ GA IV  TPGR+ D +     K  N+  +  +VLDEAD M D+GF   I  IL +
Sbjct: 448 GELKRGAEIVACTPGRMIDILTTGGGKITNLRRVTYIVLDEADRMFDMGFEPQITRILAN 507

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R+ +MFSAT    +  LA+   ++ V + I  ++  +SDID    +    DR   +
Sbjct: 508 LRPDRQTVMFSATFPHTMEALARAALENPVEIQIGGKSVVNSDIDQVVEIRPEEDRFLRV 567

Query: 236 VNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +L     +   I+F +++       K L +  +  ++L G   Q +R + +   +   
Sbjct: 568 LELLGEWCERGKIIIFVASQDKADSTFKELLKSGYPCLSLHGSKEQSDRHSTISDFKSDV 627

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +AT VAARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAG+KG +V  I ++ ++
Sbjct: 628 CNILVATSVAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEK 687

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
            A  L +    S    P         RD QR+  +
Sbjct: 688 FAPDLVKALKDSKQTVP---------RDVQRLADE 713


>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
 gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
          Length = 452

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 205/379 (54%), Gaps = 7/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++  ++  A+ + G+   + +Q A++   L  KDV+  A+TG+GKT AF + +
Sbjct: 43  MDSFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPI 102

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L +  D       P A+ I PTRELA QV  E E L       +AV  GG +++R+ 
Sbjct: 103 LEQLDSLEDCRD----PQAIVIVPTRELADQVAAEAERLARGVPTEIAVLSGGKNMNRQL 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG  +VVGTPGR+ DH++   L  +++  VVLDEAD MLD+GFR  IE I+   P+
Sbjct: 159 RQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRMLDIGFRPQIERIMRKCPR 218

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+ SAT+ P +  LA++Y  + V ++   +      I+ R   +A  D+   + ++
Sbjct: 219 NRQTLLLSATLPPVVRRLAESYMHEPVVIDCCRDEMAVDTIEQRYFTIAQDDKVRLLESL 278

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           L+    + AI+FC T+    R  +    E+     A+ G+L Q+ER   LQ +RDG  + 
Sbjct: 279 LKREKPEQAIIFCRTKRGTDRLHRKLSHEYGSACGAIHGDLQQRERDRVLQKLRDGNLKF 338

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV  RGID+  +  +++ ++  + ++ +HR GRTGR GR G++   +         
Sbjct: 339 LVATDVVGRGIDISTISHIVNFDVPQDCDDYVHRVGRTGRMGRDGVAYTFVVPGEGDILT 398

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +  N  ++ +     E
Sbjct: 399 SIEQRINKLLIRDKMDGFE 417


>gi|322700752|gb|EFY92505.1| ATP-dependent RNA helicase DHH1 [Metarhizium acridum CQMa 102]
          Length = 502

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 51  FENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 111 INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 165 QDPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 225 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 284 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 344 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 403

Query: 362 EANVSVVWEPAPSVEA 377
           +    +   P PS++ 
Sbjct: 404 DLGTEIQPIP-PSIDK 418


>gi|302138848|gb|ADK94762.1| vasa [Clarias gariepinus]
          Length = 681

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 189/390 (48%), Gaps = 14/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  ++ + +   +S  GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 245 IMTFEEAHLCETLNRNVSRAGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPI 304

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+++     +FS    P  + +APTREL  Q+  E       T V   V  GG+S  
Sbjct: 305 LQRLMSDGAAASKFSEVQEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGISTG 364

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              +++  G +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF  D+      
Sbjct: 365 YTIQEVLKGCNVLCGTPGRLLDIIGRGKVGLSKVRYLVLDEADRMLDMGFETDMRKLVSS 424

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             +    +++ ++  +          A   +++ + + +       SDI+   + V    
Sbjct: 425 PGMPPKEQRQTLMFSATYPEDIQRLAADFLKENYLFLVVGVVGGACSDIEQLIIQVTRYS 484

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +L+  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 485 KREQLLEMLKTTGDERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDF 544

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ +L  + E  +HR GRTGR G  G +V    P
Sbjct: 545 RTGKCPVLVATSVAARGLDIEHVQHVVNFDLPKSIEEYVHRIGRTGRCGNTGRAVSFFDP 604

Query: 350 QNMQRRAERLFREANVSVVWEPAPS-VEAI 378
           +     A  L +   +S   +  PS +E I
Sbjct: 605 EPDAHLARSLVKV--LSGAQQEVPSWLEEI 632


>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 710

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 148/587 (25%), Positives = 257/587 (43%), Gaps = 44/587 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + +  A    GY   T +Q A++   +  +DV   A TGSGKT AF L   
Sbjct: 148 KAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQL 207

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L    R  PA+A   L + PTRELAVQV +  E L   T +   + +GG+S + +  
Sbjct: 208 ERMLHRGPR--PAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAA 265

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    IVV TPGR+ DH+R         L  ++LDEAD +L++GF ++I+ I+   PK
Sbjct: 266 ALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPK 325

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
           KR+ L+FSAT++  +  LA    K+  R++  +       +            + ++  +
Sbjct: 326 KRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFL 385

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + I+     K+ I+F  T+    R   ++     +   L G+++Q +R  AL   R G  
Sbjct: 386 MAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTV 445

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              IATDVAARG+D+P ++ VI  +      + LHR GRT RAG+KG ++  + ++ ++ 
Sbjct: 446 THLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL 505

Query: 356 AERLFRE-ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + + +  AN+     P   V                +   I+  E+++V +   +    
Sbjct: 506 VKTIAKRGANLKARIVPGNIVAE--------------WHKKIEDMEEQIVQINYEERTER 551

Query: 415 KIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           ++    +  ++A   L    EI      +     RD   A K    + +  +       S
Sbjct: 552 QLQKAEMEANKASNILEHAAEIKSRPAKTWFQSERDKRNAQKDALKAMETAEMDLMDRKS 611

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL----- 527
              ++ A+ R     + R + +       +        V +  +  D   +  +      
Sbjct: 612 --HRKGAKRRQEAAAIEREARLTGGVATKV--------VRMVKNARDPKAKAKRAARADV 661

Query: 528 --DKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             D   +++   G   DFRG          ++   T R  +FK ASK
Sbjct: 662 HDDDDARVQS-SGRGADFRGGFRGASPGAPAKPFKTAR-GKFKSASK 706


>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
 gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
           18011]
          Length = 404

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 193/378 (51%), Gaps = 8/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   + EAL    +   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MKFSELNLHDSVLEALDAMNFEESTPIQEKAIPIILENKDLIAVAQTGTGKTAAFLLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
             L          +    + ++PTRELA Q+ +++E       V          G++  +
Sbjct: 61  DKLSEGKHIPDKVN---CIIMSPTRELAQQIDQQMEGFSYFLSVSSVAIYGGSDGIAFEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++R L  GA +V+ TPGRL  H++   +++S +K  +LDEAD MLD+GF DDI  I    
Sbjct: 118 QKRGLTMGAEVVIATPGRLLSHLKLGYVDLSEVKHFILDEADRMLDMGFFDDIMQIAQYL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ +MFSAT+   I  LA+N   +   +   + ++    I   A +     + N I 
Sbjct: 178 PKERQTIMFSATMPDKIQKLAQNILHNPEEI-KLAVSKPAEKILQAAYVCYEGQKLNIIN 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++     ++ ++VF S++A V    + L +   +V  +  +L+Q+ R   LQ  + G   
Sbjct: 237 DLFSKSKSEKSLVFASSKAKVKEVARALKKMDLKVGEIHSDLNQKTREEMLQNFKAGNID 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TD+ ARGID+ D+ LVI+ ++ ++ E+ +HR GRT RA   G+++  +    Q+  
Sbjct: 297 ILVGTDIIARGIDVDDIRLVINYDVPNDSEDYVHRIGRTARANNDGVAITFVNTKDQQNF 356

Query: 357 ERLFREANVSVVWEPAPS 374
             +       +   P P+
Sbjct: 357 LEIEDFLEKDIFKIPIPT 374


>gi|220917833|ref|YP_002493137.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955687|gb|ACL66071.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 652

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 140/466 (30%), Positives = 221/466 (47%), Gaps = 13/466 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +  A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +  
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFSIPILE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +      P AL + PTRELA+QV  E+  L     + V    GG S+  +   
Sbjct: 81  RIPDGRRK------PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDK 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVVGTPGR+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   
Sbjct: 135 LKAGAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADV 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT+   I  +  +Y  D   +     E +  +  +     V    +   ++ ++
Sbjct: 195 QQLLFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+FC+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +
Sbjct: 255 GMEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ DL  VI+  L  +P   LHR GRTGR G+KG S+ ++          L
Sbjct: 315 ATDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTAL 374

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            ++  +    +  P+ E  R+    R   +L+D +   SI      +   L  + D E +
Sbjct: 375 QKKYEIVFEKKALPTPEEARKIWTDRHVAVLKDAM-SSSIFEAYIPLAQELRNRPDGEYL 433

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  L+         +          R       +      G R  
Sbjct: 434 ISFALKYFFTHQRMEKAQDREKAEHKRTEHERRVQPEGRAAGRRAP 479


>gi|50556564|ref|XP_505690.1| YALI0F21032p [Yarrowia lipolytica]
 gi|74659647|sp|Q6C0X2|DHH1_YARLI RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49651560|emb|CAG78499.1| YALI0F21032p [Yarrowia lipolytica]
          Length = 522

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 172/371 (46%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+ N + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 30  FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQ 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + ++        AL + PTRELA+Q  +  + L    G+ V V  GG ++  +   L
Sbjct: 90  VNPKVNKI------QALIMVPTRELALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRL 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++  H++VGTPGR+ D       ++S     ++DEAD++L   F   IE +L   P+ R+
Sbjct: 144 EDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPEDRQ 203

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +             +N+  E             V    + + +  +   
Sbjct: 204 ILLFSATFPLTVKAFMDRNLHKPYEINLMDELTLRGI-TQYYAFVDEKQKLHCLNTLFSK 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 263 LDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCS 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  N +    ++ +
Sbjct: 323 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQ 382

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 383 ELGTEIKPIPA 393


>gi|157278092|ref|NP_001098146.1| VASA [Oryzias latipes]
 gi|14522857|dbj|BAB61047.1| VASA [Oryzias latipes]
          Length = 617

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 192/382 (50%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +S  GYV  T VQ+  L      +D++  AQTGSGKT AF L +
Sbjct: 180 IMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPI 239

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     RFS    P A+ +APTREL  Q+ +E       T V   V  GGV+  
Sbjct: 240 LQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYGGVNTG 299

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R+++ G +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF  D+      
Sbjct: 300 YQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLVGS 359

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  +++ ++  +          A   + D + V +       +D++   + V   +
Sbjct: 360 PGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTFLQVTKFN 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++LR  G++  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 420 KREQLLDLLRTIGSERTMVFVETKRQADFIAAFLCQEKVPTTSIHGDREQREREKALADF 479

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VA+RG+D+PD++ V++ +L +  ++ +HR GRTGR G  G +V     
Sbjct: 480 RSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCGNTGRAVSFYDP 539

Query: 351 NMQRRAER----LFREANVSVV 368
           ++  +  R    +  +A   V 
Sbjct: 540 DVDSQLARSLVGILAKAQQEVP 561


>gi|238794074|ref|ZP_04637691.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
 gi|238726579|gb|EEQ18116.1| ATP-dependent RNA helicase rhlE [Yersinia intermedia ATCC 29909]
          Length = 451

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSLDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLNNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|310644435|ref|YP_003949194.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309249386|gb|ADO58953.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 525

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 198/372 (53%), Gaps = 10/372 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +   Q   EAL E+G    T VQ+  +   +  +DV+  A TG+GKT+AF L +
Sbjct: 1   MKNFTALGVEQHWVEALKEQGISAPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRE 117
              L  +         P AL IAPTRELA+Q+  E +    A+  + +    GG  V R+
Sbjct: 61  LQKLNLDK------RHPQALVIAPTRELALQITEEAKCLAAAEPSLSLLAVYGGQDVERQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA +++GTPGRL DH+R   L++  +K +VLDEAD+ML +GF +D+E IL   P
Sbjct: 115 LRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVP 174

Query: 178 KKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +R+ ++FSAT+   I         +       ++ +   S I    V      +  A+V
Sbjct: 175 YRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALV 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L       A++FC T+   S+  + L E  F+   L G+LSQ +R   ++  R+ + +
Sbjct: 235 DMLNTDRPYLAVIFCRTKRRASKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG KG++V +         
Sbjct: 295 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 354

Query: 357 ERLFREANVSVV 368
             + R A V+  
Sbjct: 355 RNIQRVAGVTFT 366


>gi|302783318|ref|XP_002973432.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
 gi|300159185|gb|EFJ25806.1| hypothetical protein SELMODRAFT_52088 [Selaginella moellendorffii]
          Length = 506

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 198/391 (50%), Gaps = 22/391 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++    V+ E +    +V  T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 51  ITSFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPI 110

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            + +L        + R S  + PLAL ++PTREL+ Q+  E +    +TGV V V  GG 
Sbjct: 111 IAGILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGT 170

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           SV  + ++L+ G  I+V TPGRL D ++   +++S ++ + LDEAD MLD+GF   I  I
Sbjct: 171 SVQSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKI 230

Query: 173 LDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++++      +R+ ++FSAT    I  LA ++  + + + +         I  R   V  
Sbjct: 231 VENTDMPPAGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHD 290

Query: 229 SDRDNAIVNILRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            D+ + +++++               +VF  T+         L +       + G+ +Q 
Sbjct: 291 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 350

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER +AL+  R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG+ 
Sbjct: 351 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 410

Query: 342 GMSVFVIPQNMQRRAE---RLFREANVSVVW 369
           G +           A     L +EAN  V  
Sbjct: 411 GFATAFFTDKDTSLARPLVDLMQEANQQVPE 441


>gi|302789414|ref|XP_002976475.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
 gi|300155513|gb|EFJ22144.1| hypothetical protein SELMODRAFT_105510 [Selaginella moellendorffii]
          Length = 613

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 198/391 (50%), Gaps = 22/391 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++    V+ E +    +V  T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 152 ITSFADVDLGPVLNENIRRCKFVKPTPVQKHAIPISLHGRDLMACAQTGSGKTAAFCFPI 211

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            + +L        + R S  + PLAL ++PTREL+ Q+  E +    +TGV V V  GG 
Sbjct: 212 IAGILWNFPPGSRHARGSRKAFPLALILSPTRELSSQIHDEAKKFAYQTGVKVVVIYGGT 271

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           SV  + ++L+ G  I+V TPGRL D ++   +++S ++ + LDEAD MLD+GF   I  I
Sbjct: 272 SVQSQLKELERGVDILVATPGRLDDLMQRGRISLSLVRYLALDEADRMLDMGFEPQIRKI 331

Query: 173 LDSSPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++++      +R+ ++FSAT    I  LA ++  + + + +         I  R   V  
Sbjct: 332 VENTDMPPPGQRQTMLFSATFPREIQRLAADFLYNYIFLAVGRVGSSTDLIVQRVEYVHD 391

Query: 229 SDRDNAIVNILRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            D+ + +++++               +VF  T+         L +       + G+ +Q 
Sbjct: 392 VDKRSMLMDMIHAQKPNGLNGQLPLILVFVETKRGADSLEDWLIQMGISATTIHGDRTQV 451

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER +AL+  R G   + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG+ 
Sbjct: 452 EREHALRSFRTGVTPILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGKS 511

Query: 342 GMSVFVIPQNMQRRAE---RLFREANVSVVW 369
           G +           A     L +EAN  V  
Sbjct: 512 GFATAFFTDKDTSLARPLVDLMQEANQQVPE 542


>gi|168703446|ref|ZP_02735723.1| probable ATP-dependent RNA helicase [Gemmata obscuriglobus UQM
           2246]
          Length = 437

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 182/370 (49%), Gaps = 5/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I  A  + GY   T VQ   +   L  +DVL +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LHPLIVRATQDLGYQEPTPVQAGAIPAALEGRDVLATAQTGTGKTAGFLLPILHRLLAQ- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL ++PTRELA Q+      L   T +  A+ +GG     + R  + G  
Sbjct: 67  ----PRGGTRALVLSPTRELAEQIQDVCTGLAKHTPIQSALVVGGRPEGPQERAFRAGVD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++     +     +VLDEAD + D+GF  D++ I+   P ++  L+FS
Sbjct: 123 IIVATPGRLLDMLQRNVAKLDRATTLVLDEADSLFDMGFLPDVKRIMARMPARKHTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA    ++   V I   +     I   A  V    +   + ++LR     +
Sbjct: 183 ATMPPVIGQLANEVLRNPAVVQIGRRSSTAVGITQAAYPVPTHLKTALLRHLLRETEMPS 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  + +A   F V  L    +  +R+ A++  R G+ +V +AT++AAR
Sbjct: 243 VLVFTRTKFGAKKIARQVAADGFTVAELHSNRTPSQRTAAMEGFRQGKFQVMVATNIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI  ++   PE+ +HR GRTGRAG  G +  +  ++ +    R+ R+    
Sbjct: 303 GLDVNHITHVISTDVPDVPEDYVHRIGRTGRAGATGDAFILFSRDEEDSLARIERQVGQR 362

Query: 367 VVWEPAPSVE 376
           +     P  +
Sbjct: 363 LPRVTLPDFD 372


>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 449

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 1/367 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAP 373
           +     P
Sbjct: 367 LQRREEP 373


>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
 gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
          Length = 434

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 123/400 (30%), Positives = 210/400 (52%), Gaps = 11/400 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A ++ G+   T +Q   L   L+ +D++  AQTGSGKT AF L +   L  +   
Sbjct: 17  EELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQALFQQCHP 76

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F       A  ++PTRELA+Q+  + E L ++ GV     +GGVS+  +   L    HIV
Sbjct: 77  F------FACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIV 130

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH+      ++ ++K +VLDEAD++L   F  +++ IL   P++R+  +FSA
Sbjct: 131 VATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSA 190

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++  +V ++S+      +    V V    +D   V +L       A
Sbjct: 191 TMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGSTA 250

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T  S  R   +L    F  + +SG++SQ +RS AL   + G   + I TDVA+RG
Sbjct: 251 MVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRG 310

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q      +R+     +++
Sbjct: 311 LDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLIGMTL 370

Query: 368 VWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKM 403
              PA + E +    R  +AQR+    +         KK 
Sbjct: 371 PEFPAKADEVLLLEERVSEAQRLAAMHIREKDASKKSKKR 410


>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 447

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 182/377 (48%), Gaps = 10/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   + +AL +  +   T +QE  +   L  KD+L  AQTG+GKT A+ L + S
Sbjct: 2   TFEELDLNDNVLDALYDMRFETCTPIQEHCIPQILEGKDILGVAQTGTGKTAAYLLPIMS 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D   P  A   + ++PTRELA Q+ + ++        V ++ I G +       
Sbjct: 62  MLD---DGGFPHDAINCIIMSPTRELAQQIDQAMQGFGYYLDSVSSLAIYGGNDGNRYDQ 118

Query: 121 LQNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                   A I++ TPGR   HI+   +++S +   VLDEAD MLD+GF +DI  I    
Sbjct: 119 EIKSLRLGADIIIATPGRFISHIQLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKQL 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   + +MFSAT+ P I  LAK   K+ V +   + ++    I  +A L     +   + 
Sbjct: 179 PPTCQTIMFSATMPPKIEQLAKTLLKNPVEI-KLAVSKPAEKIAQKAYLCYEPQKLKVLQ 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I +       I+F   +  V    + L         +  +LSQ+ER   +   + G   
Sbjct: 238 DIFKAGSLNRVIIFSGKKQKVKEINRALVRMKVNSDEMHSDLSQEERDRVMFKFKSGATD 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I        
Sbjct: 298 VLVATDILSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARAERDGVAITLISDQDVYYF 357

Query: 357 ERLFREANVSVVWEPAP 373
           +++ R     +   P P
Sbjct: 358 QQIERFLEKDIEKVPLP 374


>gi|156554532|ref|XP_001605403.1| PREDICTED: similar to LOC556764 protein, partial [Nasonia
           vitripennis]
          Length = 595

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 183/377 (48%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P+ +   +  + +   TS+Q       L  +D++  A TGSGKT+++ L    
Sbjct: 159 TFEEAGFPEYVMREIKRQNFKEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 218

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + ++  +      P+AL +APTRELA Q+ +  +     +G+      GG     + RD
Sbjct: 219 HINSQ-PKLCRKDGPIALVLAPTRELAQQIQQVADDFGHSSGIKNTCLYGGAPKGSQARD 277

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L NG  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 278 LDNGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 337

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  LA+ + KD  ++N      S N     I           + + ++
Sbjct: 338 QTLMWSATWPKEVKNLAEEFLKDYAQINVGSLQLSANHNILQIIDVCQEYEKEIKLSTLL 397

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        IVF  T+  V   T+ +    +  V + G+ +QQER   LQ  R G+A 
Sbjct: 398 KEIMAEKENKTIVFIETKRRVDEITRKMKRDGWPAVCIHGDKTQQERDWVLQDFRSGKAP 457

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D++ VI+ +  S  E+ +HR GRTGR  + G +      +   +A
Sbjct: 458 ILVATDVAARGLDVEDVKFVINFDYPSCSEDYVHRIGRTGRRQKTGTAYTFFTPSNAGKA 517

Query: 357 ERL---FREANVSVVWE 370
             L    +EAN  +  +
Sbjct: 518 NDLVQVLKEANQVINPK 534


>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 449

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 1/367 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G+   T +Q   + P L+ +D+L +AQTG+GKT  F L L   L  E 
Sbjct: 8   LLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQRLTLEG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A++  AL + PTRELA QV   +        +  AV  GGVS++ +   L+ G  
Sbjct: 68  PQVA-ANSVRALVLVPTRELAEQVHASVRDYGQHLPLRTAVAYGGVSINPQMMKLRKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  R   +  + L+A+VLDEAD MLDLGF  +++ +  + P+KR+ L+FS
Sbjct: 127 ILVATPGRLLDLYRQNAVKFAQLQALVLDEADRMLDLGFARELDELFAALPRKRQTLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S AI TLA+   +D + + ++  N     +    V V    +     ++L+ +  + 
Sbjct: 187 ATFSDAIRTLARELLRDPLSIEVSPRNTAAKSVRQWLVPVDKKRKAELFCHLLQANRWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  TR SV     +L        ++ G+  Q  R  ALQ  + G   + +ATDVAAR
Sbjct: 247 ALVFAKTRKSVEELVGLLQRQGIAADSIHGDKPQPARLRALQRFKAGEVDLLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ ++ LV++ +L    E+ +HR GRTGRAG  G +V ++  +       +      +
Sbjct: 307 GLDIEEMPLVVNFDLPIVAEDYVHRIGRTGRAGASGQAVSLVCADEVELLAAIETLIGQT 366

Query: 367 VVWEPAP 373
           +     P
Sbjct: 367 LQRREEP 373


>gi|117647206|ref|NP_001071115.1| probable ATP-dependent RNA helicase DDX4 [Rattus norvegicus]
 gi|2500526|sp|Q64060|DDX4_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           Short=rVLG
 gi|806464|gb|AAB33364.1| vasa-like gene protein [Rattus sp.]
          Length = 713

 Score =  197 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 124/450 (27%), Positives = 200/450 (44%), Gaps = 23/450 (5%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 274 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILA 333

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG      
Sbjct: 334 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHS 393

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 394 IRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISCPG 453

Query: 178 KKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              +    +                +  + + + V +        D+    + V    + 
Sbjct: 454 MPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKK 513

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 514 RKLVEILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 573

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+  L S  +  +HR GRTGR G  G ++     ++
Sbjct: 574 GKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDTES 633

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               A+ L     V V+ +    V A  E  A      P F +S +G        + A  
Sbjct: 634 DNHLAQPL-----VKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRG-------AVFASF 681

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
           D  K   G   ++ AG+ + +   PV   S
Sbjct: 682 DTRKNFQGKNTLNTAGISSAQAPNPVDDES 711


>gi|322708424|gb|EFZ00002.1| ATP dependent RNA helicase (Dhh1), putative [Metarhizium anisopliae
           ARSEF 23]
          Length = 489

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 172/376 (45%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 38  FENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 98  INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDILRL 151

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q   HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 152 QEPVHIVVGTPGRILDLAGKSVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 211

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 212 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 270

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 271 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMQQQARNRVFHDFRNGVCRNLVCS 330

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 331 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 390

Query: 362 EANVSVVWEPAPSVEA 377
           +    +   P PS++ 
Sbjct: 391 DLGTEIQPIP-PSIDK 405


>gi|255072433|ref|XP_002499891.1| predicted protein [Micromonas sp. RCC299]
 gi|226515153|gb|ACO61149.1| predicted protein [Micromonas sp. RCC299]
          Length = 394

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   L   G+   +++Q+  + P    +DV+  AQ+G+GKT    LAL
Sbjct: 20  VSTFDGMGIREDLLRGLYSYGFEKPSAIQQRAIVPITSGRDVIAQAQSGTGKTSMISLAL 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL ++PTRELA Q  +    L     V V  CIGG S+  + 
Sbjct: 80  CQMLDTNTREV------QALVLSPTRELATQTEKTALALGNFMSVQVHACIGGRSIGEDI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G HIV GTPGR+ D I+ + L   ++KA++LDEADEML+ GF++ I  +    P 
Sbjct: 134 RKLDHGVHIVSGTPGRVFDMIKRRNLRTRNIKALILDEADEMLNKGFKEQIYDVYRYLPP 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 194 ETQVVLVSATLPQEVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 253

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T  + ++ F V ++ G++ Q+ER   +   R G  RV
Sbjct: 254 LYDTLTITQAVIFCNTKRKVDWLTDKMRQNNFTVSSMHGDMPQKERDAIMGEFRGGTTRV 313

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R   
Sbjct: 314 LITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILR 373

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 374 DIEQYYSTQIDEMPMNVADLI 394


>gi|49903707|gb|AAH75762.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 30/423 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+VV TPGRL DHIR         I  L     D   E     F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLVKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKK 402
                   +  +    +   P      I E++  +IL        Q  + L+S   DEKK
Sbjct: 355 YDIHLINAIEEQNQTKLKEFP------IEEKEVLKILTQVNVTRRQCEIKLESTDFDEKK 408

Query: 403 MVD 405
            ++
Sbjct: 409 KIN 411


>gi|209809226|ref|YP_002264764.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
 gi|208010788|emb|CAQ81183.1| putative ATP-dependent RNA helicase 1 [Aliivibrio salmonicida
           LFI1238]
          Length = 418

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 121/365 (33%), Positives = 178/365 (48%), Gaps = 1/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +SE G+   T VQ+  +   L+  DVL  AQTG+GKT AFGL L   L+   
Sbjct: 8   LTTELVNIVSELGFTEATPVQQQAIPLVLKGHDVLAGAQTGTGKTAAFGLPLIQRLIESP 67

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +     L + PTRELA QV   L      T +   V  GG SV  +  +L  GA
Sbjct: 68  SPRIANSKVIRTLILTPTRELAQQVFDSLVTYTKNTDLKCVVAYGGTSVKIQTENLIGGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+    + ++  + +VLDEAD MLD+GF  DI+ IL     K + L F
Sbjct: 128 DILVATPGRLLDHLHLNNITLNQAEYLVLDEADRMLDMGFMPDIQRILRKMASKHQTLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A     +   V +   N     ++     V    +   +  ++     K
Sbjct: 188 SATFGDKIKEIAYRILDNPKVVQVTPSNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWK 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L     +  +++G+ SQ  R  AL+  + G+ R  IATDVAA
Sbjct: 248 QVLVFTKTKQGSDDLVKELKLDGIKAASINGDKSQGARIRALEEFKTGKIRALIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ EL    E+ +HR GRTGRAG  G +V ++  +     + +    + 
Sbjct: 308 RGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAVSLMSADEDYLLKAIETLLDT 367

Query: 366 SVVWE 370
            +  E
Sbjct: 368 RLPQE 372


>gi|148652953|ref|YP_001280046.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148572037|gb|ABQ94096.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 516

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 198/372 (53%), Gaps = 6/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + EAL+  GY + T +Q   + P L  +D+L+SAQTGSGKT AF L +   ++ +
Sbjct: 46  ELAPELLEALTSSGYKHPTPIQALSIPPALAGRDLLLSAQTGSGKTAAFVLPMLDKIIRD 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
               +       + + PTRELA QV   +    +KT  + +V  +GG     + R L  G
Sbjct: 106 K---ATNKVVHTVILTPTRELANQVSDSVRQYSSKTRNIFSVPLVGGAPYGGQIRALNKG 162

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGR  DH+    +++S L  ++LDEAD MLD+GF +DIE ++ ++PK R+ +M
Sbjct: 163 VQVIIATPGRFIDHMNSGRIDLSELDILILDEADRMLDMGFAEDIEKVMKAAPKNRQTIM 222

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT    +  +A ++  +  R++I +E +   +  Y A      +R    +   +    
Sbjct: 223 CSATWDGPVGKIAASFTNNPERIDIKAETKHIDESVYYADDFNHKNRILDNLLTQKDVN- 281

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+ S     K L E   +   L G+L Q +RS  +  ++ G+  + +ATDVA
Sbjct: 282 -QAIIFAATKRSCETLAKSLKEQGHKASFLHGDLPQAKRSRIINDVKAGKITILVATDVA 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  V + +L    E+ +HR GR+GRAGR G+++ +   + + + + + R   
Sbjct: 341 ARGIDVSGITHVFNYDLPRQTEDYVHRIGRSGRAGRTGIAINICSIDDRAQLDAINRYLK 400

Query: 365 VSVVWEPAPSVE 376
            ++  E    +E
Sbjct: 401 RTMSVEEIEGME 412


>gi|91792251|ref|YP_561902.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714253|gb|ABE54179.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 473

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 198/458 (43%), Gaps = 17/458 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           + Q I  AL E GY   T +QE  +   L   +++ +AQTG+GKT +F L L   +    
Sbjct: 8   LSQPILLALEELGYQTPTPIQEKAIPVILEGHNLIAAAQTGTGKTASFVLPLLELINNTS 67

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N          AL + PTRELAVQV   +E       +      GGV     ++ L  
Sbjct: 68  LDNTVKVRPKRIRALILTPTRELAVQVAENIEQYSKHLSLTSLAIYGGVDAAPHKKRLIE 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I+D  P++R+ L
Sbjct: 128 GVDILVATPGRLLDMYTQRAVHFDELTHLVLDEADRMLDMGFIEDINKIIDKLPQERQNL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+SP +  LA        +    S       I+     V    +   I  +++ + 
Sbjct: 188 LFSATLSPQVRFLA-KTAVQHAKEIAISAKVGKPKIEQWLTAVDKEKKSALISQLIKEND 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F  T+   ++    L +   Q  A+    SQ  R   L   + G+ R  +AT +
Sbjct: 247 WPQALIFIETKHGAAKLVSQLEKRDIQAEAIHSGRSQASREQVLADFKSGKVRYLVATGI 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ DL  V++ +L   PE+ +HR GRTGRAG +G ++  +  +  +    + R  
Sbjct: 307 ASRGLDIDDLARVVNYDLPFPPEDYVHRIGRTGRAGAQGEAISFVSNDDFKNLCAIERLL 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
              +        E  R   A  +   P       G + +  +    K             
Sbjct: 367 GHEIERRVIAGFEPKRPLPASNLSFVPA--HKRDGHQPRTSERHTTK-----------AR 413

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
                 AP E  P     GR   +   R  K    S +
Sbjct: 414 TPVKPKAPREGVPFEPRQGRSAEQTQGRTQKSRDPSSN 451


>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
 gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
          Length = 408

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 195/379 (51%), Gaps = 5/379 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   +  A+++ GY   TS+Q+  +   L+ +D+L SA TG+GKT AF +   
Sbjct: 1   MQFSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +  R  P  A   L + PTRELA Q+  + E L  +T + + V  GG++    + 
Sbjct: 61  QYLM-DFPRRDPGFA-RVLIMTPTRELAYQIHEQCELLAKQTQLKIGVVTGGINYGTHKE 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +N   I++ TPGRL +++  +  +  +++ ++LDEAD MLD+GFR ++  I D +  +
Sbjct: 119 IFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLDMGFRKEMLRICDEAKNR 178

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           R+  +FSAT    ++   A+    D   +   S  ++ + I     L      +   +VN
Sbjct: 179 RQCFLFSATLEGDSVELFAERILNDPALLEAESSRKEKAKIHQWVHLADDYRHKLELLVN 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AIVF  TR  +      L  +  +   L GE+ Q +R  A++    G+ R+
Sbjct: 239 TLNGPDVSKAIVFVKTRERLETLIGELTNNGVKAAWLRGEMPQDKRMKAMENFHSGKTRI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ +I  +      
Sbjct: 299 LVATDVAARGIDVADISHVINFDMPRTADVYVHRIGRTGRAGKKGIAISLIEAHDIGILY 358

Query: 358 RLFREANVSVVWEPAPSVE 376
           ++ R     +       +E
Sbjct: 359 KVERYIEQKLKRRVFKGLE 377


>gi|288958478|ref|YP_003448819.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
 gi|288910786|dbj|BAI72275.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
          Length = 521

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 193/370 (52%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ ++GY   T +QE  +   L+ +DVL  AQTG+GKT +F L + S L +  
Sbjct: 8   LGPDVLRAIEDKGYTQPTPIQEQAIPCVLQRRDVLGCAQTGTGKTASFTLPMISILASGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV    E       + +A+ IGG +   + + L  G  
Sbjct: 68  AR---ARMPRSLILEPTRELAAQVAESFEVYGKYHKLSMALLIGGETFTEQVKKLDRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + ++ +K  V+DEAD MLD+GF  DIE I+   PK R+ L FS
Sbjct: 125 VLIATPGRLIDLFERGNIMLNDIKVFVIDEADRMLDMGFIPDIERIVSKLPKNRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  +  D + + +A        +     LV   D+  A+ ++L+    KN
Sbjct: 185 ATMPPEIRRLADAFLTDPMEITVAPPASPAETVTQALALVHEMDKRRALRHLLQTEDVKN 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A +FC+ +  ++   K L  H F V AL G++ Q +R+  L+  + G   + + +DVAAR
Sbjct: 245 AFIFCNRKRDIAVLQKSLERHGFNVGALHGDMVQSKRTETLERFKQGEITLLVCSDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V + ++   P++ +HR GRTGRAG++G +  +   +  +    + R     
Sbjct: 305 GIDVQGLSHVFNFDVPLTPDDYVHRIGRTGRAGKQGRAFMLATPDDTKLVGAITRLIKRE 364

Query: 367 VVWEPAPSVE 376
           +       +E
Sbjct: 365 IPMIAIDGLE 374


>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 414

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 183/378 (48%), Gaps = 4/378 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   I + I  +L E G+   T +Q   +   L+  DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FEQYRISEEIKRSLEELGFKRPTDIQFKAIPSILKGDDVLAIAQTGTGKTAAFAIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + R +       + + PTRELAVQ+    E L   T + +    GGV    + 
Sbjct: 60  LHKLQQYHPRKTKGE-VRCVVMVPTRELAVQISEVFERLAKYTKLNILGLHGGVDQAPQL 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  +++ TPGR+ D I    +++S    ++LDEAD MLDLGF  DI  +L   P+
Sbjct: 119 KKLAQGVDVLIATPGRMFDLISQGFIDLSQTGILILDEADHMLDLGFIRDIRDVLKHLPR 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L FSATI   I  LA +   + +R+ I+ ++    ++ +    V + D+   +  +
Sbjct: 179 RHQTLFFSATIDEDIKDLAYSVVNNPIRIQISPQDPVSKNVQHAVAYVGMDDKRFFLERL 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  T+    R    +     + + + G   Q  R   +   + G  ++ 
Sbjct: 239 VKEFPENKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEFKKGDIKLL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARGID+PD+E V++ +L   PEN +HR GRTGR  +KG +V       +   + 
Sbjct: 299 ITTDVNARGIDIPDVEYVVNYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDA 358

Query: 359 LFREANVSVVWEPAPSVE 376
           + +     +        +
Sbjct: 359 IQQYLGKEITVMKIDKND 376


>gi|213406593|ref|XP_002174068.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
 gi|212002115|gb|EEB07775.1| ATP-dependent RNA helicase, eIF4A related [Schizosaccharomyces
           japonicus yFS275]
          Length = 394

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   +   GY   +++Q   +    + +DV+  AQ+G+GKT  F + +  
Sbjct: 22  SFEEMKLKEDLLRGIYAYGYETPSAIQSRAITQICKGRDVIAQAQSGTGKTATFSIGILQ 81

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++              AL ++PTRELAVQ+   +  L     V    CIGG SV  + + 
Sbjct: 82  SIDLS------VRETQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKK 135

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L + ++K +VLDEADE+L+ GF+D I  I    P   
Sbjct: 136 LDYGQHVVSGTPGRVTDMIRRRNLRVRNVKMLVLDEADELLNRGFKDQIYDIYRYLPPGT 195

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  L   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 196 QVVVVSATLPQDVLELTNKFTTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 255

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC++R  V    + + E  F V ++ GE+ Q+ER   +Q  R G +RV +
Sbjct: 256 DTLTITQAVIFCNSRRKVDWLAEKMREANFTVTSMHGEMPQKERDAIMQEFRQGHSRVLL 315

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 316 CTDIWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTNDDVRILRDI 375

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 376 EQYYSTVIDEMPI 388


>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
          Length = 455

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 216/423 (51%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAVPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E +    R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|242060494|ref|XP_002451536.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
 gi|241931367|gb|EES04512.1| hypothetical protein SORBIDRAFT_04g003390 [Sorghum bicolor]
          Length = 410

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 194/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+N  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 37  ESFDNMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 96

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 97  QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 150

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 151 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 211 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDL 270

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 271 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 390

Query: 359 LFREANVSVVWEPA 372
           + R  NV++   PA
Sbjct: 391 IQRFYNVTIEELPA 404


>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
 gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
          Length = 461

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 190/369 (51%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L E  Y   T VQ   +   L  KDVL +AQTG+GKT  F L L   L+ +   
Sbjct: 10  EPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLLQRLVQQGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          + +    GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFADYGCGLELRMLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVRTLVLDEADRMLDLGFARELDAVFAALPTRRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I  +A     + V++++++ N   S +    V V   ++    +++L  HG ++A+
Sbjct: 189 FPDEIRAMAAKRLHEPVQISVSAPNATASRVRQWVVTVDKRNKPELFMHLLAEHGWQHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TRA V      L      V  + G+  Q  R  AL+  + G  R+ +ATDVAARG+
Sbjct: 249 VFARTRAGVDYLAARLEAAGHAVDTIHGDKPQPARLRALERFKRGEVRMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661162|sp|Q6FNK8|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
          Length = 493

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 193/367 (52%), Gaps = 8/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A     +   T +Q   + P L   DV+  AQTGSGKT AF + + + L  +
Sbjct: 79  NLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWED 138

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       A  +APTRELA Q+    + L +  GV     +GG+++  + RDL    
Sbjct: 139 QQPY------YACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKP 192

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI++ TPGRL DH+      ++ +LK +V+DEAD +LD+ F   ++ IL   P K R   
Sbjct: 193 HIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTY 252

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L    
Sbjct: 253 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 312

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDV
Sbjct: 313 GKTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 372

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q       R+    
Sbjct: 373 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 432

Query: 364 NVSVVWE 370
              +  E
Sbjct: 433 GKKLPKE 439


>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 475

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 190/367 (51%), Gaps = 2/367 (0%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + I +AL+E+GY   T +QE  +   L+  D++  AQTG+GKT AF +     
Sbjct: 3   FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    +      AL + PTRELA+Q+    E       +   V  GGV+   + + L
Sbjct: 63  LKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVKAL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG   ++ TPGRL D +    +++S ++  +LDEAD MLD+GF +D++ I+   PKK++
Sbjct: 123 RNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKKKQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I+++A+    +   V +   +     ++     V   ++   ++++L  
Sbjct: 183 TLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLIDVLEN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R  + L       VA+ G+ SQ  R  AL   +DG   V +AT
Sbjct: 243 KSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTINVMVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+ +L+ V++ EL   PE  +HR GRTGRAG  G ++           + +  
Sbjct: 303 DIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIPLLKDIEH 362

Query: 362 EANVSVV 368
              + V 
Sbjct: 363 VIQMRVP 369


>gi|319408783|emb|CBI82440.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
          Length = 454

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 128/391 (32%), Positives = 207/391 (52%), Gaps = 9/391 (2%)

Query: 1   MKIFEN------IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M I EN      IP ++ E L   G      +Q+  +   L+++D+L  AQTGSGKT+AF
Sbjct: 1   MNIKENAFIKLGIPTLLTENLFIAGINKPKPIQKQAIPVMLKKRDILGIAQTGSGKTLAF 60

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           GL + S +LA  D+  P +A  AL + PTRELAVQ+   +  +   + +   + +GGVS 
Sbjct: 61  GLPVLSQILALGDKRYPKTA-RALILVPTRELAVQIEESIRMVAKGSHLSTCLILGGVSR 119

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + ++ G  +++ TPGRL D +  K +++S  + +VLDEAD MLD+GF  D++ I  
Sbjct: 120 FAQIKRMKTGVDVLIATPGRLMDLVSEKCIDLSQSRFLVLDEADRMLDMGFIRDVQRIAK 179

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              +KR+  +FSAT+   I TLAKN   + V++ I  +    + I  +   V  S++ + 
Sbjct: 180 LLHEKRQTALFSATMPREIVTLAKNLLNEPVKIEIVPQGTVATKITQKLYCVPTSEKKSV 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L      + I+F  T+       + L +  + V A+ G  S   R  AL+  R+G 
Sbjct: 240 LNKFLTDPALASVIIFTRTKHGADAVARSLTKAGYSVAAIHGNKSHAARQRALKAFREGS 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQ 353
             + +ATD+AARGID+P +  VI+ +L    EN +HR GRTGR    G ++ +  +   Q
Sbjct: 300 VGILVATDIAARGIDVPGVSHVINYDLPDEAENYVHRIGRTGRNDTSGNAITLFDEKVEQ 359

Query: 354 RRAERLFREANVSVVWEPA-PSVEAIRERDA 383
            R   + R   + +  E   P + A+ E+  
Sbjct: 360 VRLRAVERVIRMKLTREDIPPQIAALPEKSL 390


>gi|121708606|ref|XP_001272186.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143019610|sp|A1CIQ5|HAS1_ASPCL RecName: Full=ATP-dependent RNA helicase has1
 gi|119400334|gb|EAW10760.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 625

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 215/470 (45%), Gaps = 14/470 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A++E G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 150 LSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML--SA 207

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    L ++PTRELA+Q+      L         + IGG +   E   L  G +
Sbjct: 208 LRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGGANRRAEAEKLMKGVN 267

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH++        +LK +V+DEAD +L++GF D++  I+   P + R  M 
Sbjct: 268 LLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTML 327

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 328 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 387

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 388 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICT 447

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  +  +     + L 
Sbjct: 448 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVGFLKHL- 506

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +   
Sbjct: 507 KEARVPVVEFEFPASKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSLRSVFDV 566

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                +++ +    +      + L +   R +   +  +   GS+ N KG
Sbjct: 567 HKLDLVKVAKGFGFSTPPRIDIQLGASLSRDKKQQQQGRRNYGSQPNGKG 616


>gi|169854086|ref|XP_001833720.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
 gi|116505187|gb|EAU88082.1| ATP-dependent rRNA helicase RRP3 [Coprinopsis cinerea okayama7#130]
          Length = 455

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 207/391 (52%), Gaps = 13/391 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EAL + GY + T +Q   L   L  +D++  A+TGSGKT AF L +  
Sbjct: 20  TFKSLGLIDPLLEALEQVGYKSPTEIQSESLPHALEGRDIIGVAETGSGKTAAFALPILQ 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E           A  +APTRELA Q+ ++ E L A  G   AV +GG+ +  +   
Sbjct: 80  KLWEEP------KGLFACVLAPTRELAYQISQQFEALGAAMGARCAVIVGGMDLPTQAIA 133

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VV TPGRL  H    KG ++  LK +VLDEAD +LD+ F   I+ IL   PK+
Sbjct: 134 LAKRPHVVVATPGRLLQHLEETKGFSLRTLKFLVLDEADRLLDMDFGPAIDKILKLIPKE 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + VRV ++ + +  S +    +LV L D+   ++ + 
Sbjct: 194 RTTYLFSATMTSKVAKLQRASLVNPVRVEVSGKYQTVSTLLQHYLLVPLKDKVVMLIYLA 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F  T       + +L    F  V L G+LSQ +R  AL   + G  ++ +
Sbjct: 254 NSLAQNSIIIFTRTVRDARLLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRKILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+
Sbjct: 314 ATDVASRGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRAGKAITLVTQYDVELLQRI 373

Query: 360 FREANVSVVWEPAPSVEA--IRER--DAQRI 386
            +     +   P    E   ++ER  +A+R+
Sbjct: 374 EKVIGKKMDAWPTDDEEVLLLKERVSEAERL 404


>gi|238763827|ref|ZP_04624785.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
 gi|238697957|gb|EEP90716.1| ATP-dependent RNA helicase rhlE [Yersinia kristensenii ATCC 33638]
          Length = 452

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
 gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
           multiformis DSM 16608]
          Length = 572

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 218/495 (44%), Gaps = 26/495 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + +AL +  +   T VQE  +   L+ KDVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGKDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P SA   + ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P
Sbjct: 120 LKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +
Sbjct: 180 ASCQTIMFSATMPKKIEELAKTLLKNPVEI-KLAVSKPAEKIHQMAYVCYETQKIGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  I+F  ++  V +    L+        +  +L Q++R++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIIFSGSKQKVKQIAASLSRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +  +     +
Sbjct: 299 LVATDIVARGIDIDDITMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVSVDDIYYFQ 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++       +   P P  E + E    +    P    S +   +K  D    K D ++  
Sbjct: 359 QIEAFLEKEIEKIPLP--EELGEGPEYKSNGKPKRGSSAKSRRRKDRDQQSHK-DKKQGG 415

Query: 418 ---------AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                    A    +        +E       +G  + + ++R       S D   G   
Sbjct: 416 NKQRSRRPTAQDQNVSDDRNTDKQERETSDRQNGNKQKQQENRPEATEEKSGDKKNG--- 472

Query: 469 FSLSVGSKQKAEARW 483
              S G +Q  + + 
Sbjct: 473 -RQSKGRQQDRQPKA 486


>gi|74693203|sp|Q755N4|DBP2_ASHGO RecName: Full=ATP-dependent RNA helicase DBP2
          Length = 557

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+ + + + E G+   T++Q       L  +D++  A TGSGKT+++ L  
Sbjct: 113 IRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 172

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 173 IVHINAQ-PLLSPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQI 231

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 232 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 291

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++VNI S     +   + +          DR   
Sbjct: 292 DRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQLGEVVSDFDKRDRLVK 351

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            + I         I+  ST+ +    T  L +  +  +A+ G    Q+    L   R GR
Sbjct: 352 HLEIGSKDKDSKIIILHSTKRTCDEITSYLRQDGWPALAIHGPTPLQDIDCTLNDYRTGR 411

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ- 353
           + + +ATDV ARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  + 
Sbjct: 412 SPIMVATDVVARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKT 471

Query: 354 --RRAERLFREANVSVVWE 370
              +   + REA   +  +
Sbjct: 472 LGAQLISIMREAKQEIPQD 490


>gi|320014325|gb|ADV97896.1| putative ATP-dependent RNA helicase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V T GRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATHGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|296817029|ref|XP_002848851.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|302506162|ref|XP_003015038.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|238839304|gb|EEQ28966.1| eukaryotic initiation factor 4A-12 [Arthroderma otae CBS 113480]
 gi|291178609|gb|EFE34398.1| hypothetical protein ARB_06798 [Arthroderma benhamiae CBS 112371]
 gi|326469057|gb|EGD93066.1| eukaryotic initiation factor 4A-12 [Trichophyton tonsurans CBS
           112818]
 gi|326480615|gb|EGE04625.1| eukaryotic initiation factor 4A-12 [Trichophyton equinum CBS
           127.97]
          Length = 399

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LEHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|83282276|ref|XP_729699.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23488233|gb|EAA21264.1| ATP-dependent RNA Helicase [Plasmodium yoelii yoelii]
          Length = 477

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/371 (26%), Positives = 173/371 (46%), Gaps = 4/371 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L   
Sbjct: 99  FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 158

Query: 62  LLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                +         ++L + PTRELA+Q    ++ L     +   V  GG S+  +   
Sbjct: 159 CNTHKNFIQGKTIQKISLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMR 218

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L N  HI+ GTPGR+ D       N+S    +V+DEAD++L   F+  +E ++   PK++
Sbjct: 219 LYNAVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEK 278

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LM+SAT    +    + Y  DA  +N+  E             V    + + +  +  
Sbjct: 279 QILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGI-TQYYAFVKERQKVHCLNTLFA 337

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  +    +   +SQ  R+      R+G  R  ++
Sbjct: 338 KLQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVS 397

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ 
Sbjct: 398 SDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIE 457

Query: 361 REANVSVVWEP 371
            E    +   P
Sbjct: 458 LELGTEIQPIP 468


>gi|220681312|gb|ACL80032.1| vasa-like protein [Bombyx mori]
          Length = 601

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 198/381 (51%), Gaps = 13/381 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N+ + + + + + GY   T +Q+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 179 IESFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIMMSGRDLMGCAQTGSGKTAAFLVPI 238

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +       +    P  + ++PTR L +Q+  E       + + VAV  GG +V 
Sbjct: 239 INMLLQDPKDLISENGCAQPQVIIVSPTRVLTLQIFNEARKFSYGSVLKVAVAYGGTAVR 298

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  ++  G HI+V TPGRL D +    ++   ++ VVLDEAD MLD+GF   IE ++  
Sbjct: 299 HQGDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLH 358

Query: 176 SPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  KR+ LMFSAT    I  LA  +  + + V +       +D++   + V   ++
Sbjct: 359 PTMVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEK 418

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            N++  ++  +  K  +VF  T+ +      +L+E      ++ G+  Q+ER  ALQ  +
Sbjct: 419 RNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFK 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +AT VAARG+D+ ++++V++ +L  + +  +HR GRTGR G +G +V     +
Sbjct: 479 SGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSD 538

Query: 352 MQ----RRAERLFREANVSVV 368
                     ++ R+A+ SV 
Sbjct: 539 QDLALVADLSKILRQADQSVP 559


>gi|146096170|ref|XP_001467723.1| ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|134072089|emb|CAM70788.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
 gi|322501693|emb|CBZ36774.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 614

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 112/388 (28%), Positives = 188/388 (48%), Gaps = 17/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N
Sbjct: 140 LAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNN 199

Query: 67  -DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +R  P +   AP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L 
Sbjct: 200 LNRAKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELT 259

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         
Sbjct: 260 RGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPP 319

Query: 183 LM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT    I  +A+ +      + +        +I      V   D+   ++
Sbjct: 320 PGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLL 379

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  R
Sbjct: 380 EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCR 439

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++       +   
Sbjct: 440 VLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFFNDKNRNIV 499

Query: 357 ER---LFREANVSVVWEPAPSVEAIRER 381
           +    L RE N +V     P V+A+ ++
Sbjct: 500 DDLIPLLRETNQTV----LPEVQALAKK 523


>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 186/370 (50%), Gaps = 6/370 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     + +++ + GY   T +Q   +   L  +D++  AQTG+GKT +F L +
Sbjct: 22  MK-FADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPM 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + 
Sbjct: 81  IDVLAHGRRR---ALMPRSLILEPTRELAAQVAENFEKYGKNHDLRMALLIGGVQMGDQV 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L +G  +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIE I    P 
Sbjct: 138 KALSDGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRMLDMGFIPDIESICSKLPT 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I  LA  +  +   + +A     + +I    V  A  D+   + ++
Sbjct: 198 TRQTLLFSATMPPPIKKLADRFLSNPKYIEVARPASANINIVQHKVACASRDKRKVLRHL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF + + +V    K L  H F    + G++ Q +R   LQ  +DG+  + 
Sbjct: 258 LRTDNVSTAIVFANRKTTVRDLAKSLKRHGFAAGEIHGDMDQPQRLAELQRFKDGQINIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            A+DVAARG+D+  +  V + +   +P++ +HR GRTGR G  G +  ++          
Sbjct: 318 CASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRGGASGRAFTLVSAEDAEAIAN 377

Query: 359 LFREANVSVV 368
           + +   + + 
Sbjct: 378 VEKLTGIPIP 387


>gi|323335026|gb|EGA76316.1| Dbp1p [Saccharomyces cerevisiae Vin13]
          Length = 617

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 281 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 521 NIVKGLMEILNEANQEVP 538


>gi|190407839|gb|EDV11104.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
          Length = 617

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 281 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 521 NIVKGLMEILNEANQEVP 538


>gi|160380607|sp|A6ZWD3|DBP1_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|151942679|gb|EDN61025.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
          Length = 617

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 281 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 521 NIVKGLMEILNEANQEVP 538


>gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
          Length = 618

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 162 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 221

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 222 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 281

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 282 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 341

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 342 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 401

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 402 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 461

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 462 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 521

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 522 NIVKGLMEILNEANQEVP 539


>gi|6325138|ref|NP_015206.1| Dbp1p [Saccharomyces cerevisiae S288c]
 gi|1706311|sp|P24784|DBP1_YEAST RecName: Full=ATP-dependent RNA helicase DBP1; AltName: Full=DEAD
           box protein 1; AltName: Full=Helicase CA1
 gi|1163095|gb|AAB68243.1| Dbp1p: putative ATP-dependent DEAD box RNA helicase [Saccharomyces
           cerevisiae]
 gi|256274187|gb|EEU09095.1| Dbp1p [Saccharomyces cerevisiae JAY291]
 gi|259150039|emb|CAY86842.1| Dbp1p [Saccharomyces cerevisiae EC1118]
 gi|285815423|tpg|DAA11315.1| TPA: Dbp1p [Saccharomyces cerevisiae S288c]
 gi|323346178|gb|EGA80468.1| Dbp1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 617

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L    
Sbjct: 161 LDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSG 220

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P AL +APTRELA Q+  E      ++ V   V  GG  +  +
Sbjct: 221 PSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQ 280

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 281 MREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 340

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S + R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +
Sbjct: 341 MPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKS 400

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +  
Sbjct: 401 ALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKAN 460

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q
Sbjct: 461 VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQ 520

Query: 354 RRAE---RLFREANVSVV 368
              +    +  EAN  V 
Sbjct: 521 NIVKGLMEILNEANQEVP 538


>gi|327294865|ref|XP_003232128.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
 gi|326466073|gb|EGD91526.1| eukaryotic initiation factor 4A-12 [Trichophyton rubrum CBS 118892]
          Length = 399

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 194/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFDDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TVLRESQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  I    P   
Sbjct: 140 LEHGQHVVSGTPGRVADMIRRRHLRTRNIKMLVLDEADELLNRGFREQIYDIYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
 gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
          Length = 432

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 190/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     + +AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + + +   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELIKQISDEAKEIGSILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    V V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHITLESIDQRVYMMNPEEKTQRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|169145046|emb|CAQ08925.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Homo sapiens]
          Length = 652

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 188/374 (50%), Gaps = 10/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ + E   + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAAR--GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+R  G+ + D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L
Sbjct: 397 DVASRGLGLYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQAREL 456

Query: 360 FR---EANVSVVWE 370
            +   EAN ++  +
Sbjct: 457 IKVLEEANQAINPK 470


>gi|123443103|ref|YP_001007077.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090064|emb|CAL12927.1| putative ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|74681080|sp|Q5B5E7|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
 gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
           nidulans FGSC A4]
          Length = 465

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 124/409 (30%), Positives = 205/409 (50%), Gaps = 13/409 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + EA    GY   T +Q   +   L  +DV+  A+TGSGKT AF L + 
Sbjct: 46  KSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPML 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+              L +APTRELA Q+ +  E L +  GV  AV +GG+ +  +  
Sbjct: 106 QALMEAPQ------TLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSI 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK + +DEAD +LD+ F + ++ I+   P+
Sbjct: 160 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPR 219

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R   +FSAT+S  + +L +    + VRV+++S+ +  S +    + +    ++  +V +
Sbjct: 220 TRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYL 279

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++AI+F +T     R   +L    F  + L G+LSQ  R  AL   R     + 
Sbjct: 280 LNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDIL 339

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +++V + +L  + +  +HR GRT RAG+ G+++  + Q       R
Sbjct: 340 VATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLR 399

Query: 359 LFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +    +  +        E   + ER A+   Q  + + S   DEKK   
Sbjct: 400 IEHALSKKLPEYQVEKDEVMVMSERVAEASRQATIEMKSF--DEKKGAR 446


>gi|312069559|ref|XP_003137738.1| hypothetical protein LOAG_02152 [Loa loa]
 gi|307767094|gb|EFO26328.1| hypothetical protein LOAG_02152 [Loa loa]
          Length = 415

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +++DV+  AQ+G+GKT  F +A+   +    
Sbjct: 49  LKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNIDETI 108

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV     IGG +V  ++R L++G H
Sbjct: 109 PEV------QALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVH 162

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I  + L  +++K  VLDEADEML  GF++ I  +    P   ++++ S
Sbjct: 163 VVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPNDVQVVLLS 222

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+   +  +   +  D +R+ +  E      I      +     +   + ++       
Sbjct: 223 ATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYINVEKEEWKFETLCDLYSTVNVT 282

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V      +++  + V  + GE+ Q ER   ++  R G +RV I TD+ A
Sbjct: 283 QAVIFCNTRRKVDYLATQMSKEKYTVSCMHGEMEQSERDVIMREFRSGSSRVLITTDLLA 342

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  I +   R  + +    N 
Sbjct: 343 RGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITEADMRMMKDIESFYNT 402

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 403 QIEEMPM 409


>gi|292493687|ref|YP_003529126.1| DEAD/DEAH box helicase [Nitrosococcus halophilus Nc4]
 gi|291582282|gb|ADE16739.1| DEAD/DEAH box helicase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 423

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 191/366 (52%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+   T +Q   L   L  KDV   AQTG+GKT AF LA    LL +
Sbjct: 15  NLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKTAAFLLATMQYLLRD 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL +APTRELA+Q+ ++ + L   TG+   V  GG +  ++R  L+ G 
Sbjct: 75  LG-IEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGANYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GTPGRL D+ + +  +   ++ VVLDEAD M DLGF  DI +IL   P   +   +
Sbjct: 134 DILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYILRRLPPPHKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +T LA  +  +   V   S+      I  R    A  ++   ++ +L+   
Sbjct: 194 LFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKERVYFPANEEKIPLLLALLKRLA 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+ +  +    L  + F+   LSG++ Q +R   L+  ++G   + +ATDV
Sbjct: 254 PQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEFQEGSYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  +PE+ +HR GRT RAG  G +V    ++       +    
Sbjct: 314 AARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFSLPDIEEYI 373

Query: 364 NVSVVW 369
              +  
Sbjct: 374 GHKLAP 379


>gi|168015786|ref|XP_001760431.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688445|gb|EDQ74822.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 675

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 178/375 (47%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P  +   +   G+ + T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 156 SFEAVGLPPDMLREIQAAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAFL 215

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R +    P  L IAPTRELA Q+  E       + +      GG     + RD
Sbjct: 216 HL--ERHRNNSRLGPSVLVIAPTRELATQIQEECVKFGRSSRITSTCVYGGAPKGPQLRD 273

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ GA IV+ TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++    +R
Sbjct: 274 IERGADIVIATPGRLNDFLEVKKISLRQVSYLVLDEADRMLDMGFEPQIRKIVNEILSRR 333

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +V   ++   +  I
Sbjct: 334 QTLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELSANKSITQHVEVVVPYEKQRRLEQI 393

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + I+   +   +           F   A+ G+ SQ ER   L   R GR  + 
Sbjct: 394 LRSQEPGSKIIVFCSTKRMCDMLSRNLGRDFGAAAIHGDKSQSERDFVLSQFRTGRTPIL 453

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G++     +   + A+ 
Sbjct: 454 VATDVAARGLDIKDIRFVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKE 513

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  E
Sbjct: 514 LIKVLEGANQKVPQE 528


>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660562|sp|Q6CT85|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
          Length = 487

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 198/379 (52%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA     Y   T +Q   + P L+  D++  AQTGSGKT AF + + + L  +
Sbjct: 73  DLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHD 132

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +       A  +APTRELA Q+    + L +  GV     +GG+S+  + RDL    
Sbjct: 133 QQPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKP 186

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HI++ TPGRL DH+      N+  LK +V+DEAD +LD+ F   ++ IL+  P + R   
Sbjct: 187 HIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTY 246

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +L    
Sbjct: 247 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 306

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K+ IVF  T+A+  R + +     F   AL G+L+Q +R+ AL + + G+  + +ATDV
Sbjct: 307 GKSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q       R+    
Sbjct: 367 AARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVL 426

Query: 364 NVSVVWEPAPSVEAIRERD 382
              +  E       +  RD
Sbjct: 427 GKKLPKENVDKDAILALRD 445


>gi|51595558|ref|YP_069749.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           32953]
 gi|108807091|ref|YP_651007.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Antiqua]
 gi|108812974|ref|YP_648741.1| ATP-dependent RNA helicase RhlE [Yersinia pestis Nepal516]
 gi|153950333|ref|YP_001401773.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis IP
           31758]
 gi|166211637|ref|ZP_02237672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400295|ref|ZP_02305808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167423922|ref|ZP_02315675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|170025120|ref|YP_001721625.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis YPIII]
 gi|186894614|ref|YP_001871726.1| ATP-dependent RNA helicase RhlE [Yersinia pseudotuberculosis PB1/+]
 gi|229894068|ref|ZP_04509254.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229903411|ref|ZP_04518524.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|294503186|ref|YP_003567248.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
 gi|51588840|emb|CAH20454.1| putative ATP-dependent RNA helicase rhlE [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776622|gb|ABG19141.1| DEAD/DEAH box helicase [Yersinia pestis Nepal516]
 gi|108779004|gb|ABG13062.1| DEAD/DEAH box helicase [Yersinia pestis Antiqua]
 gi|152961828|gb|ABS49289.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia
           pseudotuberculosis IP 31758]
 gi|166207408|gb|EDR51888.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167050244|gb|EDR61652.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056771|gb|EDR66534.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751654|gb|ACA69172.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186697640|gb|ACC88269.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679181|gb|EEO75284.1| putative ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229703953|gb|EEO90966.1| putative ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361223|gb|ACY57944.1| DEAD/DEAH box helicase [Yersinia pestis D106004]
 gi|294353645|gb|ADE63986.1| DEAD/DEAH box helicase [Yersinia pestis Z176003]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
          Length = 456

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 213/422 (50%), Gaps = 11/422 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   + + +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +
Sbjct: 8   VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              LL             P  A  A  ++PTRELA+Q+  + E L A   +  AV  GG+
Sbjct: 68  LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGI 127

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
              ++   L    H++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL+  P++R+  +FSAT++  +  L +   ++ V++  AS+      +  +   VA   +
Sbjct: 188 ILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D  +V IL       +++F  T         VL    F+ + +SG+++Q +R  AL   +
Sbjct: 248 DCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 ++ +     +   PA   E  ++ ER A+      + +    G +++  D   +
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEES 427

Query: 410 KH 411
           + 
Sbjct: 428 ER 429


>gi|27379459|ref|NP_770988.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27352611|dbj|BAC49613.1| ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 500

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 198/387 (51%), Gaps = 13/387 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+   + +  A++  GY   T +QE  +   L  KDVL  AQTG+GKT AF L + +
Sbjct: 2   SFSNLGLSEKVLAAVAATGYTTPTPIQEQAIPHVLARKDVLGIAQTGTGKTAAFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV    +   A   + VA+ IGGVS   +   
Sbjct: 62  ILEKGRAR---ARMPRTLILEPTRELAAQVKENFDRYGAGQKLNVALLIGGVSFGDQDAK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R
Sbjct: 119 LTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L F+AT+ P I  + + +  +  +V ++        +    V       +   +    
Sbjct: 179 QTLFFTATMPPEIRRITETFLHNPQKVEVSKPATTAVTVTQSQVPAGKKAHEKRELLRRL 238

Query: 241 YHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              AK   NAI+FC+ +  V+   K L +H F V AL G++ Q  R  AL+  R G   +
Sbjct: 239 LREAKDLKNAIIFCNRKREVAIVHKSLQKHGFSVGALHGDMDQPARMAALEQFRKGELPL 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P++  V + ++  +P++ +HR GRTGRAGR G ++ ++    Q+   
Sbjct: 299 LVASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRSGTAISIVTPLDQKSMV 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
            + +    S+     P  E   E  A+
Sbjct: 359 AIEKLIGQSI-----PRAEGDYEVHAE 380


>gi|332161012|ref|YP_004297589.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604884|emb|CBY26382.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665242|gb|ADZ41886.1| ATP-dependent RNA helicase RhlE [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|308051267|ref|YP_003914833.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307633457|gb|ADN77759.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 427

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 184/370 (49%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P    + EAL   G+ + T +Q   L   L  KD+   AQTG+GKT+AF +A    
Sbjct: 11  FADFPLAPQVVEALESSGFTHCTPIQALTLPIVLSGKDIAGQAQTGTGKTLAFLVATFHE 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL +         +P AL +APTRELA+Q+ ++ E L   TG+ + +  GG     +R  
Sbjct: 71  LLKQPAPEGHDGKSPRALIMAPTRELAIQIFKDAEPLSEATGLKLGLAYGGEGYDSQRAT 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK- 179
           L+ G  I++GT GRL D+ +     ++ ++ +VLDEAD M DLGF  DI ++    P   
Sbjct: 131 LEAGVDILIGTTGRLIDYYKQGTYKLNGIQVMVLDEADRMFDLGFIKDIRYLFRRMPAPA 190

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   ++ +
Sbjct: 191 ERRNMLFSATLSFKVQELAYEHMNEPEHVQVEPEQKTGKRIKEELFYPSNDDKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AI+F +T+         +A    +V  L+G++ Q++R   L+  + G     
Sbjct: 251 IEEDWPDKAIIFANTKHRCEDIWAWMAGDGHRVGLLTGDVPQKKRVKILEQFKAGEVDFL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G S+    +        
Sbjct: 311 VATDVAARGLHIADVTHVFNYDLPDDAEDYVHRIGRTGRAGATGHSISFACEQYALNLPA 370

Query: 359 LFREANVSVV 368
           +       + 
Sbjct: 371 IEEYIGHQIP 380


>gi|291165175|gb|ADD81192.1| vasa [Katsuwonus pelamis]
          Length = 643

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 186/380 (48%), Gaps = 14/380 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 208 TFDEAALCESLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 267

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P A+ +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 268 QLMADGVAASRFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTAHQ 327

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R++  G ++V GTPGRL D I    + ++ L+ +VLDEAD MLD+GF  D+        
Sbjct: 328 IREISRGCNVVCGTPGRLLDMIGRGKVGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 387

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   + V    + 
Sbjct: 388 MPSKENRQTLMFSATYPEDIQRLAADFLKTDYLFLAVGVVGGACSDVEQTFIQVTKFSKR 447

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 448 EQLHDLLKTTGMERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALTDFRS 507

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN- 351
           G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     + 
Sbjct: 508 GKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDPDA 567

Query: 352 ---MQRRAERLFREANVSVV 368
              + R    +  +A   V 
Sbjct: 568 DGQLARSLITVLSKAQQEVP 587


>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
 gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
           35310]
          Length = 558

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 117/506 (23%), Positives = 219/506 (43%), Gaps = 27/506 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +   + +AL +  +   T VQE  +   L+ +DVL  AQTG+GKT A+ L + 
Sbjct: 1   MKFEELELNNNVLDALYDMRFDTCTPVQEKCIPEILKGRDVLGVAQTGTGKTAAYLLPIM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER- 118
           S + + N    P  A   L ++PTRELA Q+ + ++        V +V + G +      
Sbjct: 61  SKIDSGN---YPEDAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYD 117

Query: 119 ---RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
              + L+ GA +V+ TPGR   H+    +++S +   VLDEAD MLD+GF +DI  I   
Sbjct: 118 QELKSLRMGADVVIATPGRFISHMSLGNVDLSKVSFFVLDEADRMLDMGFSEDIMTIAKG 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  + +MFSAT+   I                 + ++    I   A +   + +   I
Sbjct: 178 LPKTCQTIMFSATMPDKI-NELARTLLKNPVEVKLAVSKPAEKIKQTAYVCHETQKLGII 236

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I +    K  I+FC  +  V + ++ L         +  +L Q +R   +   + G+ 
Sbjct: 237 KKIFKQGDLKRVIIFCGAKQKVKQVSQALQRMKINCGEMHSDLDQAQRDEVMFQFKSGQI 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++    
Sbjct: 297 DVLVATDILSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGAAITLVSKDDIYY 356

Query: 356 AERLFREANVSVVWEPAPS--------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
            +++ +     V     P             + +  +   +     +  Q   K+     
Sbjct: 357 FQQIEKFLEKEVEKVELPEELGEAPDYTADGKPQRKRSSAKSVRRKNRDQTAHKRKPRRN 416

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             +  P+++ A   +  +      +E +  +        +  ++        ++N  G+ 
Sbjct: 417 KNEQRPKEVDA---KSEQTNEKQAQERSKTADKQPAKNRQKSNKRKNNRRKQQNNTDGAG 473

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSG 493
                  +KQ+ + R     +   +G
Sbjct: 474 TQR----NKQRNDKRQ---AIDNKTG 492


>gi|168049229|ref|XP_001777066.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671509|gb|EDQ58059.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 616

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/400 (30%), Positives = 195/400 (48%), Gaps = 21/400 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  I + L  +G    T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 170 IKNFKDMRFPDPILKKLKAKGITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 229

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L E  R        P  L + P+RELA Q    +E   A         +   +CIG
Sbjct: 230 IMLALQEEVRMPLIGGEGPFGLVVCPSRELARQTYDVVEEFTAVLSEKGYPQLRSMLCIG 289

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   +++G HIVV TPGRL D +  K +N+ + K + LDEAD ++DLGF +DI 
Sbjct: 290 GIDMRSQLEVVKHGVHIVVATPGRLKDMLAKKKMNLDNCKYLTLDEADRLVDLGFEEDIR 349

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   AK+     V VN+      + D+      V    
Sbjct: 350 EVFDHFRGQRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEA 409

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 410 KIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREFAIASF 468

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 469 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINK 528

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAIRE 380
           N         + L +EA   +        +P    E + +
Sbjct: 529 NQSETILLDLKHLLKEAKQRIPPVLATLDDPMEEAEELAK 568


>gi|160944592|ref|ZP_02091819.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443776|gb|EDP20780.1| hypothetical protein FAEPRAM212_02105 [Faecalibacterium prausnitzii
           M21/2]
          Length = 435

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 7/355 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            + I +A+   G+  +T +QE  +   L   DV+  A TG+GKT AFG+ +   +  EN 
Sbjct: 49  SEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN- 107

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAH 126
                  P A+ +APTRELA Q+  EL  L      V  A   GG ++ ++ + L  G  
Sbjct: 108 -----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQ 162

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFS
Sbjct: 163 IVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFS 222

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K 
Sbjct: 223 ATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAAR
Sbjct: 283 VMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAAR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++ S  E+  HR GRTGRA ++G+S        ++R + L R
Sbjct: 343 GIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR 397


>gi|156548270|ref|XP_001601432.1| PREDICTED: similar to GA21647-PA [Nasonia vitripennis]
          Length = 460

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 119/394 (30%), Positives = 210/394 (53%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +A  +  +   T +Q   +   ++ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 33  DSLCQACEDLKWKAPTKIQREAIPLTIQGKDVIGLAETGSGKTAAFALPILQALLENPQR 92

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+  + E L A  GV   V +GG+ +  +   L    HI+
Sbjct: 93  Y------FALILTPTRELAFQISEQFEALGASIGVKCVVIVGGMDMMTQSLMLAKKPHII 146

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSA
Sbjct: 147 IATPGRLVDHLENTKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 206

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ V+V ++++ +    +    V + +  +D  +V+IL      + 
Sbjct: 207 TMTKKVQKLQRASLQNPVKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILNELSGNSF 266

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 267 MIFCSTCNNTMRTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 326

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN--V 365
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G+SV  + Q      +R+ +     +
Sbjct: 327 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISVTFVTQYDVELYQRIEQLIGKQL 386

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
            +       V  ++ER A+      + +  I+ +
Sbjct: 387 PIYKTEEQEVMVLQERVAEAQRMVKMEMKDIEEN 420


>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
           proteobacterium ANT8C10]
          Length = 635

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 136/575 (23%), Positives = 235/575 (40%), Gaps = 50/575 (8%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + + I ++L +  +   + +Q+  +   L  K+++ +AQTG+GKT +F L + 
Sbjct: 1   MSFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +   +S      AL + PTRELA QV   +      T +      GG  +  ++ 
Sbjct: 61  EMLHEQAKPYSKN--VHALVLTPTRELAAQVRESVHSYGKLTNITSTAVFGGAKIFPQKA 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +  K + +  ++ +VLDEAD MLD+GF  DI+ I+  +P  
Sbjct: 119 KLKKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHMLDMGFIHDIKKIIAMTPPT 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT SP I  LA++     V ++  S N   S I      V  + + + + +++
Sbjct: 179 RQNLLFSATFSPEIKKLAQSLGDGLVEISAQSPNTTVSKIKQIVYHVDKNKKSDLLAHMI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF  T+    +    L     +   + G+ +Q  R+ AL+  +    RV +
Sbjct: 239 EEEQWDQALVFSKTKHGCEKIADYLNAAGIETGTIHGDKTQGARTKALREFKGKFVRVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ +L  V++ ++ + P + +HR GRTGRAG++G ++ ++  +  +    +
Sbjct: 299 ATDVAARGIDISNLPFVVNFDMPTYPNDYIHRIGRTGRAGQEGTAISLMSSDEHKFLRGI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                + +      S EA +  D              +GD +           P      
Sbjct: 359 EGLLKIKIDQT---SHEAFKPNDKP--------SGGGRGDSRS--------RSPRGRKPA 399

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           F R +R+              S       + R  + G G  ++            S    
Sbjct: 400 FSRNNRSSDGKSGNSYSKPGGSSSRPGNAEGRPERSGAGRPNSGGAGRP------SNGGG 453

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT---VKLDKGIQLKYL 536
                      +    R   G                G     R+        G      
Sbjct: 454 RPN------SGAGRPERSGAGR------------PNSGAGRPERSGAGRPSSGGAGRPSN 495

Query: 537 GGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           GG +P+    + S    + +  GA +  +   G  
Sbjct: 496 GGGRPNSGAGRPSNGGGRPNS-GAGRPERSGAGRP 529


>gi|113970505|ref|YP_734298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885189|gb|ABI39241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 487

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 209/459 (45%), Gaps = 7/459 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+ 
Sbjct: 8   LHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR-FADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     A+ + PTRELA+QV   +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FS
Sbjct: 126 LLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++ +    
Sbjct: 186 ATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQENNWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    ++ +HR GRTGRAG +G ++  + ++  R    + R     
Sbjct: 306 GIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-----VLLAKHDPEKIAAGFL 421
           +V       E  +      +   P    + +    K  D        +   P    A   
Sbjct: 366 IVRREIAGFEPKKIVPISILDFVPKSASTTERKPHKPTDTSAQPRPYSSGKPGTFEATQA 425

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           + HR+    P    P +    R   R DSR      G+ 
Sbjct: 426 KKHRSAKATPAPKAPKTGTDSRSGTRSDSRPTSPLQGNP 464


>gi|238788773|ref|ZP_04632564.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
 gi|238723078|gb|EEQ14727.1| ATP-dependent RNA helicase rhlE [Yersinia frederiksenii ATCC 33641]
          Length = 451

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ E+GY+  T +Q   +   L  +D++ SAQTG+GKT  F L L   L    
Sbjct: 8   LNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQNQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+   ++       +   V  GGVS++ +   L+ G  
Sbjct: 68  QPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 ILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA     +   V +A  N     I      V  + +   +  ++     + 
Sbjct: 188 ATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   +DG+ RV +ATD+AAR
Sbjct: 248 VLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRA R G ++ ++  +  +    + R     
Sbjct: 308 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALDGYEPDPSIKA 384


>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
          Length = 725

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 9/389 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 108 VQAFEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPA 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R S    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 168 IVHINNQ-PRLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSCIRNTCIFGGSPKGPQA 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 227 RDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R++LM+SAT    +  LA+++  D +++NI S     + +I     +    +++  +  
Sbjct: 287 DRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSQ 346

Query: 238 ILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +LR  GA+ +  I+F  T+  V   TK +    +  +++ G+ SQ ER   L   R+G+ 
Sbjct: 347 LLREIGAERSKMIIFVETKKKVDDITKTIKRDGWPAISIHGDKSQPERDYVLSEFRNGKT 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +      N  R+
Sbjct: 407 MILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQ 466

Query: 356 AERL---FREANVSVVWEPAPSVEAIRER 381
           A+ L     EA  ++  + A    ++R +
Sbjct: 467 AKELIAVLEEAGQAINPQLAEMANSVRNQ 495


>gi|319411699|emb|CBQ73743.1| probable ATP-dependent RNA helicase DHH1 [Sporisorium reilianum]
          Length = 491

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 177/388 (45%), Gaps = 11/388 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT A+ +     
Sbjct: 42  FEDYFLKRELLMGIFEAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEK 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + ++        A+ + PTRELA+Q  +  + L    GV V V  GG ++  +   L
Sbjct: 102 LNTKKNKI------QAVLLVPTRELALQTSQVAKTLGKHLGVEVMVTTGGTTLRDDILRL 155

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   PK+R+
Sbjct: 156 GQTVHMLVGTPGRILDLAGKGVADLSQCTTFVMDEADKLLSPEFTPVMEQLLSFLPKERQ 215

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +             +N+  E             V    + + +  +   
Sbjct: 216 VMLFSATFPLIVKDFKDRNMVKPYEINLMDELTLRGV-TQYYAFVEERQKVHCLNTLFSK 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 275 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCS 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 335 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 394

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD 389
           E    +  +P PS    R   A  ++Q+
Sbjct: 395 ELGTEI--QPIPSNIDKRLYVAPSLIQE 420


>gi|197099326|ref|NP_001126958.1| probable ATP-dependent RNA helicase DDX5 [Pongo abelii]
 gi|75061603|sp|Q5R4I9|DDX5_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|55733290|emb|CAH93327.1| hypothetical protein [Pongo abelii]
          Length = 614

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
          Length = 415

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 198/376 (52%), Gaps = 9/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AF L + + +L   
Sbjct: 14  LSSILVKNLFSAGMNKPKFIQEKAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILTLG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL + PTRELA+Q+   +  +   T +   + +GG+S   + R +  G  
Sbjct: 74  DKRYPKTA-RALILVPTRELAIQIEEAISAIAKGTHLSTCLIVGGMSRLTQIRRMAKGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ T GRL D IR K +++S  +  +LDEAD MLD+GF +D+  I     +K +  +FS
Sbjct: 133 ILIATTGRLMDLIRSKYVDLSQSRFFILDEADRMLDMGFINDVRQIARFLNEKCQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA N  +  V++ + S+    ++I      V+ S++ + +  +L      +
Sbjct: 193 ATMSKEVNVLADNLLRKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSILSKLLTNPALTS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L +  + V  + G  SQ  R  AL+  R+G  RV +ATD+AAR
Sbjct: 253 VIVFIRTKHGADSVARSLTKAGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR- 361
           GID+P +  VI+ +L  N E+ +HR GRTGR G  G ++    + +++      ERL R 
Sbjct: 313 GIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITFFDEKIEQVRLCAIERLIRM 372

Query: 362 ---EANVSVVWEPAPS 374
                 + + + P P 
Sbjct: 373 KLKRKEIPLQFAPLPE 388


>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 585

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 199/399 (49%), Gaps = 19/399 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+AF L +
Sbjct: 138 VKNFQDMRFPEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPM 197

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
            +    E      +P   P  L I P+RELA Q    +E     T           +C+G
Sbjct: 198 ITIAFQEEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFLIPTRRAGYPELRALLCVG 257

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI 
Sbjct: 258 GVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 317

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   +   AK+     V VN++     + D+      V   D
Sbjct: 318 EIFSYFKAQRQTLLFSATMPTKVQNFAKSALVKPVIVNVSRAGAANLDVIQEIEYVKQED 377

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++           ++FC ++A V +  + L     +VVA+ G   Q+ER  A+   
Sbjct: 378 KTAYLLKC-LEKTPPQVLIFCESKADVDKIHEYLLLKGVEVVAIHGGKDQEEREYAISSF 436

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V IATDV ++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 437 KSGKKDVLIATDVVSKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 496

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERDAQR 385
           N         + L +EA   +     P +  ++  + + 
Sbjct: 497 NQSETTLLDLKHLLQEAKQKIP----PVLVEVKGSEMEN 531


>gi|119944600|ref|YP_942280.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863204|gb|ABM02681.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 403

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 189/384 (49%), Gaps = 2/384 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY   T +QE  +   L  K+++ +AQTG+GKT +F L +   L+   
Sbjct: 8   LSDPIVKAVTELGYQTPTPIQEQAIPVILAGKNLIAAAQTGTGKTASFVLPILQNLIDAP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A     L + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 68  A--VRAKRIRVLILTPTRELAVQVENNIAQYGKYLPLKSMAMYGGVDSEPQKQQLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L+ +V+DEAD MLD+GF  DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTRRAIHFDELEVLVIDEADRMLDMGFLPDINKIVERLPLQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    DAV + I+ + R    I+   + V   ++   + +++  +  + 
Sbjct: 186 ATLSDQVRFLAKTAITDAVEIAISPDYRTAPQIEQCLISVDKDNKSALLSHLIIENQWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A+    SQ  R+  L   + G+    +AT +AAR
Sbjct: 246 ALIFIETKRGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGQLNFLVATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    +       
Sbjct: 306 GIDIDSLARVVNYDLPDEADDYVHRIGRTGRAGVSGEAISFVSRDDFRNLCAIENRLGEF 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDP 390
           +  +     E   E  A  +   P
Sbjct: 366 ITRKKIDGFEPKLEVPASNVAYAP 389


>gi|50086240|ref|YP_047750.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
 gi|49532216|emb|CAG69928.1| putative ATP-dependent RNA helicase [Acinetobacter sp. ADP1]
          Length = 640

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 152/580 (26%), Positives = 248/580 (42%), Gaps = 22/580 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + + + +AL + G+ + T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 7   KNFADFSLHESLQQALQDLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            +L  +       +R    + P  L I+PTRELA QV ++   L      V    I G  
Sbjct: 67  HSLAGQDTFLPFKERMRAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGM 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 127 PFAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +  I  LA+   +D +R+ I + +  ++DI            + 
Sbjct: 187 ELAANRKQTLMFSATFADRIIRLAECMMQDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 246

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 247 KLLTHWLSDESMDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+A++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 307 GKAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 366

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E                     G  +           
Sbjct: 367 RGKIRALEDYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGGRRDGGRGGFGGGR 426

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
             +  + F R        P+          R  F  + R  +     R   +G       
Sbjct: 427 RFEGESNFKRRDGGRDDRPKRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 486

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G     P   F +  A          + D  
Sbjct: 487 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDHPKRDFGDRPARREGGFNDKPRFDSN 538

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
              +   G + D++  +   F  +  +D   +   R +G+
Sbjct: 539 DDNR---GNRVDYKPRREGSFGDRPKRDFGDRPAPRREGS 575


>gi|298369527|ref|ZP_06980844.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282084|gb|EFI23572.1| 3-hydroxyisobutyrate dehydrogenase family protein [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 210/380 (55%), Gaps = 4/380 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     I  AL+E+GY   T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNPFASLGLGSEIVSALTEQGYETPTPIQTAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L        SPA  P+  L + PTRELA Q+ + ++       +   V  GGV++ +
Sbjct: 61  LERLKRYATASTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFIDDIRKIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ L+FSAT +P I  LAK++      V +A++N   S+++   + V    + N + 
Sbjct: 181 PKQRQTLLFSATFAPPIRKLAKDFMNAPEIVEVAAQNTTSSNVEQHIIAVDALKKRNLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ SV + T+ L        ++ G+ SQQ R   L   ++G  R
Sbjct: 241 RLIVDLQMNQVIVFCKTKQSVDQVTRDLVRRNLAAQSIHGDKSQQSRLETLNAFKEGSLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL + PE+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDKTEQKMF 360

Query: 357 ERLFREANVSVVWEPAPSVE 376
           E +       +  E     E
Sbjct: 361 EAIKELTGNDLAVERIEGFE 380


>gi|55963471|emb|CAI11913.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 30/423 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+VV TPGRL DHIR         I  L     D   E     F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPVKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVKELDQRFILTPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKK 402
                   +  +    +   P      I E++  +IL        Q  + L+S   DEKK
Sbjct: 355 YDIHLINAIEEQNQTKLKEFP------IEEKEVLKILTQVNVTRRQCEIKLESTDFDEKK 408

Query: 403 MVD 405
            ++
Sbjct: 409 KIN 411


>gi|316969700|gb|EFV53757.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 693

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 213/435 (48%), Gaps = 16/435 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + + +A+S   YVN T +Q A +   L  KD+   A TG+GKT A+ + +  
Sbjct: 153 TFEEMNLSRSLNKAISSMNYVNPTPIQSACIPVALLGKDICACAATGTGKTCAYMIPILE 212

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +         L + PTRELA+QV      L   T + +A+  GG+ +  +   
Sbjct: 213 RLLF---KPVGRRITRVLVMVPTRELAMQVYETGTTLAKYTSISIALSTGGMDLKSQEAA 269

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +V+ TPGRL DH     G N++ ++ +VLDEAD MLD  F + +  I+      
Sbjct: 270 LRLNPDVVIATPGRLIDHLHNSPGFNLNGVEILVLDEADRMLDEHFEEQMLEIMRLCSPT 329

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT++  +  LA    K  V++ +        ++  + V +      +   ++ 
Sbjct: 330 RQAMLFSATMTDKVKDLASVSLKKPVKLFVNENTEMALNLRQQFVRIRKERECSREASLA 389

Query: 240 ---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              +       ++F  T+    R   +L     +V  L G LSQ +R +AL+  + G   
Sbjct: 390 ALLKRSFTSKVLLFAGTKEVCHRLRLLLGLLGIRVAELHGNLSQAQRIDALEQFKKGVVD 449

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+  ++ VI+ ++    +  +HR GRT RAGR G +V  + ++ ++  
Sbjct: 450 VLVATDVAARGIDVQGVKTVINYQMPHVFKLYVHRVGRTARAGRSGCAVSFVSEDDRKLV 509

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEK 415
           + + +    S+      + +A+     QR++ + L  +D I  +EK+   + +A+   ++
Sbjct: 510 KEIVKHCPTSIKRRIL-NKDAVES--CQRMIDELLPEIDRIVEEEKQERQLSIAE---KQ 563

Query: 416 IAAGFLRIHRAGLCA 430
           IA    ++      A
Sbjct: 564 IAQAKAKLENDHHQA 578


>gi|197337346|ref|YP_002157966.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197314598|gb|ACH64047.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 418

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 193/384 (50%), Gaps = 5/384 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   ++E G+   T VQ+  +   L+  DVL  AQTG+GKT AFGL L   L+   
Sbjct: 8   LTEQILTTVAELGFKEATPVQKQAIPLVLQGHDVLAGAQTGTGKTAAFGLPLIQRLIESP 67

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +R   +    +L + PTRELA QV   L      T + V V  GG S++ ++ +L  GA
Sbjct: 68  IERHEESKVVRSLILTPTRELAQQVFDSLVSYTQNTELKVVVAYGGTSINVQKENLLGGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DH+  K + ++  + +VLDEAD MLD+GF  DI+ IL   P +R+ L F
Sbjct: 128 DILIATPGRLLDHLHIKTITLNQAEYLVLDEADRMLDMGFIPDIKKILRKMPDERQTLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  +A         V +   N     ++     V    +   +  ++     +
Sbjct: 188 SATFSKKVREIAYYMLNKPKEVQVTPTNSTADTVEQMVYPVDKHRKSELLAYLIGSRNWQ 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       K L +   +  +++G+ SQ  R  AL+  + G+ R  IATDVAA
Sbjct: 248 QVLVFTKTKQGSDELVKELKKDGIKAASINGDKSQGARLRALEEFKTGKVRALIATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ EL    E+ +HR GRTGRAG  G ++ ++  + +   + +    + 
Sbjct: 308 RGLDIEQLECVINYELPFKAEDYVHRIGRTGRAGHTGKAISLMSMDEEYLLKAIETLLDT 367

Query: 366 SVVWEPA----PSVEAIRERDAQR 385
            +  E      P   A  + D  R
Sbjct: 368 RLPQEWLQGYEPDPNAPLKEDRPR 391


>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160358661|sp|A7TS37|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 506

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 195/372 (52%), Gaps = 10/372 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + EA     +   T +Q   + P L+  D++  AQTGSGKT AF + + +
Sbjct: 87  SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILN 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +   +       A  +APTRELA Q+    + L +  GV  A  +GG+++  + RD
Sbjct: 147 RLWHDQQPY------YACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARD 200

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P +
Sbjct: 201 LMRKPHIIIATPGRLMDHLENTRGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQ 260

Query: 180 RRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  ++ +
Sbjct: 261 GRTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTYLIYL 320

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  IVF  T+A+  R T +     F   AL G+L+Q +R+ +L + + GR  + 
Sbjct: 321 MNEFIGKTIIVFTRTKANAERITTLANLLEFSATALHGDLNQNQRTGSLDLFKAGRRSIL 380

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +++VI+ ++  + ++ +HR GRT RAGR G S+ ++ Q       R
Sbjct: 381 VATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILR 440

Query: 359 LFREANVSVVWE 370
           +       +  E
Sbjct: 441 IEDVLGKKLPKE 452


>gi|291566695|dbj|BAI88967.1| ATP-dependent RNA helicase [Arthrospira platensis NIES-39]
          Length = 484

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 194/419 (46%), Gaps = 14/419 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE++   +     L   G+   T VQ   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 22  QSFESLGISEQRARHLETLGFTEPTPVQIQAIPEMLSGRDVVGMAQTGTGKTAAFSLPIL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +         A+   AL + PTRELA+QV   +        + V    GG S+ R+ +
Sbjct: 82  EQIDVH------AAGIQALVLTPTRELAMQVKEAIRTFSDDNALYVLTVYGGQSIDRQIQ 135

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSP 177
            L+ G  +VVGTPGR+ D +    L +  L+ +VLDEADEML +GF  D+E I     S 
Sbjct: 136 RLRRGVQVVVGTPGRILDLLNRGELKLDLLRWLVLDEADEMLSMGFIQDVEKILESADSE 195

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++     +   +     + ++ +          +           ++     +  A+  
Sbjct: 196 HRQTAFFSATMDASISKLVRRHLKSPVTVKVETPKATPKRIEQSVYMVPRGWSKARALEP 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     ++AI+F  T+ S +  T  L      V    G L+Q +R   L  +R  + R 
Sbjct: 256 ILELEDPESAIIFVRTKQSAADLTNQLQAAGHSVDEYHGNLNQSQRERLLMRLRRRQVRW 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  L  VI+ +L    ++ +HR GRTGRAGR+G ++ +I    +R+  
Sbjct: 316 IVATDIAARGLDVDHLTHVINYDLPDQVDSYVHRIGRTGRAGREGKAITLIQPIDRRKLR 375

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            + R    ++  +  P    I  R   R+   ++D L  + +      +V  L  ++DP
Sbjct: 376 NIERHLRQTLSIQSIPKRAEIEARYIDRLKDRVRDALAGERM-ASFLPIVSQLSEEYDP 433


>gi|281211648|gb|EFA85810.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1269

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 173/371 (46%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + +   + E+GYV  + +QE  +   L  KD++  A+ G+GKT +F +     
Sbjct: 44  FDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALTGKDIMARAKNGTGKTASFLIPALEK 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D          L + PTRELA+Q  +  + L     V V    GG S+  +   L
Sbjct: 104 TDPTKDYI------QVLILVPTRELALQTSQVCKELGKYMNVKVMASTGGTSLKDDIMRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D  +    N+++   +++DEAD++L   F+  IE ++   P +R+
Sbjct: 158 YETVHILVATPGRVLDLAQKSVANLNNTHTMIMDEADKLLSPEFQPLIEQLIHFLPAQRQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + Y + A  +N+  E             V    + + +  +   
Sbjct: 218 ILLFSATFPVTVKAFKEAYLQKAYEINLMEELTLKGV-TQYYAFVEERQKIHCLNTLFSK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 277 LQINQSIIFCNSVNRVELLAKKITDLGYSCFYIHAKMLQAHRNRVFHDFRNGHCRNLVSS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+ D+ +VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 337 DLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLHKIEQ 396

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 397 ELGTEIKPIPP 407


>gi|301602401|gb|ADK79106.1| vasa-like protein [Dicentrarchus labrax]
          Length = 637

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 199 IMTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 258

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 259 LQQLMADGVAASSFSELQEPEAVIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 318

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R++  G +++ GTPGRL D I    + +S ++  VLDEAD MLD+GF  D+      
Sbjct: 319 HQIREISRGCNVLCGTPGRLLDVIGRGKVGLSKVRYFVLDEADRMLDMGFEPDMRRLVGS 378

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 379 PGMPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFS 438

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 439 KREQLLDLLKTTGMERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADF 498

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 499 RSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFFDP 558

Query: 351 NMQRRAER----LFREANVSVV 368
           +   +  R    +  +A   V 
Sbjct: 559 DSDDQLARSLVTILSKAQQEVP 580


>gi|74354729|gb|AAI03319.1| DDX5 protein [Bos taurus]
          Length = 671

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 157 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 216

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 217 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 275

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 276 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 335

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 336 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 395

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 396 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 455

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 456 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 515

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 516 VLREANQAINPKLLQLVED 534


>gi|291242437|ref|XP_002741112.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Saccoglossus kowalevskii]
          Length = 398

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 200/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N  + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  
Sbjct: 26  TFDNMGLREDLLRGIYAYGFEKPSAIQQRAVRPVVKGRDVIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 86  TLDTQ------VRETQALILSPTRELAVQIQKVILALGDYMSVQCHSCIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++FSAT+   I  +   +  + +R+ +  +      I    V +     + + + ++ 
Sbjct: 200 QVILFSATLPHEILEMTHKFMTEPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDI 379

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 380 EQYYSTQIDEMPMNVADLI 398


>gi|50305963|ref|XP_452942.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660551|sp|Q6CSZ7|DHH1_KLULA RecName: Full=ATP-dependent RNA helicase DHH1
 gi|49642075|emb|CAH01793.1| KLLA0C16599p [Kluyveromyces lactis]
          Length = 514

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 174/374 (46%), Gaps = 11/374 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   + E G+   + +QE  +   +  KD+L  A+ G+GKT AF +    
Sbjct: 37  SFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIAGKDILARAKNGTGKTAAFVIPTLE 96

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + ++        AL + PTRELA+Q  + +  L    G+   V  GG ++  +   
Sbjct: 97  KVKPKLNKI------QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMR 150

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI+VGTPGR+ D    +  ++S     ++DEAD+ML   F+   E IL   P++R
Sbjct: 151 LNEPVHILVGTPGRVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERR 210

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT    +      + K+   +N+  E             V    + + +  +  
Sbjct: 211 QLLLFSATFPVTVKEFMVKHLKNPHEINLMDELTLKGI-SQFYAFVEEKQKLHCLNTLFS 269

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F        + Q ER+      R G+ R  + 
Sbjct: 270 KLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVC 329

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++ 
Sbjct: 330 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIE 389

Query: 361 REANVSVVWEPAPS 374
           +E N  +   P PS
Sbjct: 390 QELNTEIA--PIPS 401


>gi|86358753|ref|YP_470645.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
 gi|86282855|gb|ABC91918.1| ATP-dependent RNA helicase protein [Rhizobium etli CFN 42]
          Length = 560

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 197/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++   + I   L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 22  LTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEGRDLIGLAQTGTGKTAAFGLPL 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R         L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 82  IEKLLADERRPD-NRTTRTLILAPTRELVNQIAENLKKFIRKSPLRINVVVGGVSINKQQ 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D +  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 141 LQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDLGFVHDLRKIAKLVPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ ++FSAT+  AI  LA  Y  D V+V +    +    ++     V   + +   +  
Sbjct: 201 KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRK 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    AIVF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 261 SLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  +   
Sbjct: 321 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 380

Query: 358 RLFREANVSVV 368
            + R   + + 
Sbjct: 381 DIERLMGIDIT 391


>gi|310658279|ref|YP_003936000.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308825057|emb|CBH21095.1| atp-dependent rna helicase, dead/deah box family [Clostridium
           sticklandii]
          Length = 423

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 203/399 (50%), Gaps = 8/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++       + L        T +QE  +   L+ KD++  AQTG+GKT+AF L L
Sbjct: 1   MRTFYDLGINTDNIDKLRNMYITKPTKIQEQAIPLILKGKDIIGKAQTGTGKTLAFVLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L          S P  L + PTRELA+Q+   +E L   +   V    GG  V +++
Sbjct: 61  IQMLDEN------ISIPQVLILTPTRELALQITTVVEELLKDSAFDVVSVYGGHDVEKQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+N A  VVGTPGR+ DHIR   +N  +LK VV+DEAD+M+  GF +D++ + D +P+
Sbjct: 115 NQLKNNAQFVVGTPGRILDHIREGSINFKNLKHVVIDEADQMMAFGFMEDLDLLFDKTPQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + ++FSATI   I  LA+    +A+ ++I  E+    +I    V      R  ++   
Sbjct: 175 KIQKMIFSATIPDMIRKLARKIMNNAINIDIDPESVVIDNIRQVVVRTTEERRLQSLEMA 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A++FC ++   +     +    + V  L G+ SQ +R N ++  R+ +    
Sbjct: 235 LKEFKPFMAMIFCKSKERANELYDNMVNLRYDVEILHGDFSQNKRENIMKRFRELKFPFL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD++ARG+D+  +  V + ++    E  +HR GRTGRAG KG++V  +      + ++
Sbjct: 295 VTTDISARGMDIDGITHVFNYDIPRQIEYYIHRVGRTGRAGEKGIAVSFVADKEVEQMKK 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           + +   +S+      S +  +  + + +L+  +    ++
Sbjct: 355 IQKTVGISIPEVYDRSSDERKRMNIETLLEGKVKTKEVR 393


>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
 gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
          Length = 557

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 213/477 (44%), Gaps = 19/477 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +AL+E  +   T +Q   +   L  +D++  AQTG+GKT AF L +   L+ + 
Sbjct: 14  LAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILHHLVTKR 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    SA  AL ++PTREL+ Q+               A+ IGGV + R+ R L  G  
Sbjct: 74  LRPERRSA-RALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPIGRQARSLAGGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +    + +  ++  VLDEAD+MLD+GF   I  I+   P KRR L FS
Sbjct: 133 VLVATPGRLVDLLENNAVRLDMVEVFVLDEADQMLDMGFIHAIRSIVARLPHKRRNLFFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA     D VRV +    +    I+ +      + + N +V +L       
Sbjct: 193 ATMPREIEKLADTLLSDPVRVAVTPVAKTADKIEQKVFFTDRAGKPNLLVEVLGEPTLDR 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    R  K LA       A+ G  SQ +R  AL   R G  +V +ATD+AAR
Sbjct: 253 ALVFSRTKHGADRVVKSLAGAGINAEAIHGNKSQPQRERALAAFRQGVVKVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  VI+ +L + PE+ +HR GRT RAGR+G+++       +     + R   ++
Sbjct: 313 GIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAISFCDGEERPFLRDIERLIKLT 372

Query: 367 VV-------------WEPAPSVEA--IRERDAQRILQDPLFLDSIQGD---EKKMVDVLL 408
           +                P    E    RE    R  + P      + D    ++      
Sbjct: 373 IPSVDRRGETRRDGTTRPVAGREDNSFREERGPREHRGPREDRGPRQDRGPRREGEQRPF 432

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +    +  +G  R    G     E  P       D    ++R+ + G        G
Sbjct: 433 HRGPRPEHRSGEARSEERGPRREGEQRPFHRGPRPDHRGGEARSEERGFRPERPHDG 489


>gi|259485547|tpe|CBF82660.1| TPA: ATP-dependent RNA helicase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 498

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 41  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q     + L    G+ V V  GG  +  +   L
Sbjct: 101 INPKSTK------TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 155 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 214

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 215 VMLFSATFPMIVKSFKDRHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 273

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 274 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 333

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 334 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 393

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 394 ELGTEIQPIP 403


>gi|260802690|ref|XP_002596225.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
 gi|229281479|gb|EEN52237.1| hypothetical protein BRAFLDRAFT_276047 [Branchiostoma floridae]
          Length = 924

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/454 (24%), Positives = 211/454 (46%), Gaps = 11/454 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             + + +   L + G+   T +Q   +   +  +D++  A+TGSGKT+AF + +   +L 
Sbjct: 242 SGVSKKVLACLKKHGFEKPTPIQAQAIPVIMSGRDMIGIAKTGSGKTLAFLIPMFRHILD 301

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +         P+ + + PTRELA+Q+ +E +       + V    GG  +  +  +L+ G
Sbjct: 302 QRP-LEDTEGPIGVIMTPTRELALQITKECKKFTRHMNLKVVCVYGGTGISEQIAELKRG 360

Query: 125 AHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           A I++ TPGR+ D      G+  N+     +VLDEAD M D+GF   +  I++S    R+
Sbjct: 361 AEIIICTPGRMIDMLAANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHIVNSVRPDRQ 420

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT    +  LA+   +  + V +   +   SD++   +++    +   ++ +L  
Sbjct: 421 TVMFSATFPRNMEALARKVLQKPIEVQVGGRSVVCSDVEQHVIVLEEEQKFFKLLELLGN 480

Query: 242 HGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +  K + +VF   +       K L +  +  ++L G + Q +R + +   + G  R+ +A
Sbjct: 481 YQEKGSVLVFVERQEVADTLLKDLLKAAYSCLSLHGGIDQYDRDSIINDFKSGNIRLLVA 540

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T VAARG+D+  L LVI+ +  ++ E+ +HR GRTGRAG KG +   I ++  R A  + 
Sbjct: 541 TSVAARGLDVKQLILVINYDCPNHYEDYVHRVGRTGRAGNKGYAYTFITEDQGRYAGDVI 600

Query: 361 REANVSVVWEPAPSV----EAIRERDAQ--RILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +   +S    P   +    E +  + A+   + +   F       ++    +   +   +
Sbjct: 601 KALELSERPVPEEVLNLWTEYVNRQKAEGKAVKKTSGFTGKGFKFDETEQALADERRKLQ 660

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           K A G             +     + + + R +D
Sbjct: 661 KAALGLQDSDEEDAAVDIDQQIEDMFASKKRVKD 694


>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 439

 Score =  196 bits (498), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 188/402 (46%), Gaps = 18/402 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KLGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      +++L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSEILRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----ANVSVVWEPAP--------SVEAIRERDAQRILQD 389
            R         ++    P         V+++ ++   RI + 
Sbjct: 364 KRYTEEILKARILEGLEPRTKPPKDGEVKSVSKKQKARIKEK 405


>gi|187933251|ref|YP_001885671.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
 gi|187721404|gb|ACD22625.1| cold-shock deAd box protein a [Clostridium botulinum B str. Eklund
           17B]
          Length = 367

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 185/372 (49%), Gaps = 7/372 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K  E I + I   L++ G    T +QE  +   L  KDV+  A+TG+GKT+AF L +  
Sbjct: 3   FKSLE-INENIVNILNKNGIKTPTPIQEESIPKILLGKDVIGEAKTGTGKTLAFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +          +    L ++PTRELA+Q+  E + L     + +    GG  +  + + 
Sbjct: 62  NISPNT------NGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKK 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++  H+V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+ ++ KK 
Sbjct: 116 LKHNIHLVIATPGRLLDHIERKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKAASKKH 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+   +  LA  Y  D + ++I S       I  + V      + +++   L+
Sbjct: 176 QTLCFSATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCAALQ 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC T+         L +       +  ++ Q +R   ++  R+   +  IA
Sbjct: 236 EDNPFMAIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +  + + +    PE+ +HR GRTGRAG  G +   +          + 
Sbjct: 296 TDVAARGIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSYLLNAIE 355

Query: 361 REANVSVVWEPA 372
           ++   ++     
Sbjct: 356 KKLGFTIPRREI 367


>gi|330926789|ref|XP_003301614.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
 gi|311323488|gb|EFQ90287.1| hypothetical protein PTT_13150 [Pyrenophora teres f. teres 0-1]
          Length = 1053

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 226/471 (47%), Gaps = 13/471 (2%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ +   +A+   G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 580  NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--S 637

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              RF P +    + ++PTRELA+Q+      L         +CIGG +   E   L+ G 
Sbjct: 638  QLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFGICIGGANRSAEAEKLRKGV 697

Query: 126  HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            ++++ TPGRL DH+         +L+++V+DEAD +L++GF D++  I+   P +R+ ++
Sbjct: 698  NLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQTML 757

Query: 185  FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241
            FSAT +  +  LA+   K            +HS +       VL     R   + + L+ 
Sbjct: 758  FSATQTTKVEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCDSDTRFRLLFSFLKK 817

Query: 242  HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            H  K  IVF S+ ASV  ++++L      V+ L G+L QQ R+N      + ++   I T
Sbjct: 818  HQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGTLICT 877

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
            DVAARG+D+P+++ VI  +   +P + +HR GRT R A  KG S+  +  +      +L 
Sbjct: 878  DVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFL-KLL 936

Query: 361  REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
            +E+ V +V    P+ + +  +   + ++    +L+    D  +      A H    +   
Sbjct: 937  KESRVPLVEFELPANKILNIQSQLEALISKNYYLNKSAKDGYRSYLQSYASHSLRSVFDV 996

Query: 417  -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                 +++ ++   +      ++L +G  R +        G   +   +  
Sbjct: 997  NKLDLVKVAKSFGFSTPPRIDITLGAGLSRDKKVEGRRAYGSQPQQGRRPM 1047


>gi|310824350|ref|YP_003956708.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309397422|gb|ADO74881.1| ATP-dependent RNA helicase [Stigmatella aurantiaca DW4/3-1]
          Length = 579

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 25/477 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     +A+    + + T +Q   + P L  +DV+  A TG+GKT A+ L L   L  E 
Sbjct: 10  LSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVERLAGE- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL +Q+ +E  +     G+  AV  GG  +  +   L+    
Sbjct: 69  ------RGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQRPT 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D ++    N+S ++ +VLDEAD  L++GF  +++ IL + P++R+ L+FS
Sbjct: 123 LVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +T  A+   +  VRV +       +    R   V  S++   ++++L       
Sbjct: 183 ATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLLAKDQLS- 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  TR    +  +VL     +  A+  + +Q +R  AL+  R G+ R  +ATD+A+R
Sbjct: 242 VLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVATDIASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  VI+ +L   PE+ +HR GRT RAG  G +   +    +     + R     
Sbjct: 302 GLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIER----- 356

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK----HDPEKIAAGFLR 422
           +V    P  E  RE        DP+F++ ++  +    D  L K      P  ++A   R
Sbjct: 357 IVRMSLPRAEVPRE--------DPVFVEELEEFQAGQEDAELTKPRGLPRPTGVSAKGGR 408

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                  A +      ++ G +   D     +   G   +   S   S   G  + A
Sbjct: 409 RGGGRARAVDAFPSDEVLPGWEEPGDKGPTRRGNSGREADRTHSRPTSGGRGKARGA 465


>gi|262275236|ref|ZP_06053046.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262220481|gb|EEY71796.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 410

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 191/381 (50%), Gaps = 4/381 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F  +   +   L+  GY + T++Q+  +   L  KDV+ +AQTG+GKT AF L +   LL
Sbjct: 6   FSLLHPTLQHTLNALGYSDPTAIQQQAIPHVLDGKDVMGAAQTGTGKTAAFALPVIHQLL 65

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +     A   L + PTRELA QV  ++      T +      GG +++ ++  L  
Sbjct: 66  ERGVK----GAARVLVVTPTRELAQQVYEKVVEYSQHTSLKCVALYGGANINPQKNQLTK 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+VGTPGRL DH+    L ++ L  ++LDEAD MLD+GF  DI+ ++   PK R+ L
Sbjct: 122 KPEIIVGTPGRLLDHLHIGTLTLNSLDTLILDEADRMLDMGFISDIKRLMKKMPKTRQTL 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT    +  LA     + VR+ +++ N     ++     V    +   +  ++    
Sbjct: 182 FFSATYPKQVVDLAYRLLSNPVRIEVSTANSTAETVNQLVHPVDKKRKRELLSYLIGSRN 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  TR S       L     +  A+ GE +Q  R+  L+  + G  RV +ATDV
Sbjct: 242 LQQVLVFAKTRQSTEALANELKLDGLKAEAIHGEKTQGARNRVLEGFKSGEVRVLVATDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P L+ V + EL   PE+ +HR GRTGRAG+ GM++ ++ +  +     +    
Sbjct: 302 AARGLDIPSLDTVFNYELPHQPEDYIHRIGRTGRAGKPGMAISLVSREEEGMLTAIETLI 361

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
           ++ +  E     E     D +
Sbjct: 362 DLRLPQEWLAGYEPDLHADME 382


>gi|260798638|ref|XP_002594307.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
 gi|229279540|gb|EEN50318.1| hypothetical protein BRAFLDRAFT_275600 [Branchiostoma floridae]
          Length = 563

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 116/401 (28%), Positives = 205/401 (51%), Gaps = 5/401 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S+  + + T +Q+A +   L  KDV   A TG+GKT AF L +   LL +
Sbjct: 2   NLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFMLPVLERLLYK 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L +APTRELAVQV +    L   T V +++  GG+ +  +   L+ G 
Sbjct: 62  PRQ---APVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQEAALRLGP 118

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH       ++  ++ ++LDEAD MLD  F + +  I+    +KR+ ++
Sbjct: 119 DVVIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCARKRQTML 178

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA    ++ V++ +        ++    + +  +   +    I      
Sbjct: 179 FSATMSDQVKDLAAVSLENPVKLFVNENTDVAFNLRQEFIRIRPNREGDREAIIAARTFH 238

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + IVF  T+    R   +L      V  L G LSQ +R   L+  +D    V +ATD+A
Sbjct: 239 DHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDVLLATDLA 298

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++ VI+  + S  ++ +HR GRT RAG+ G +V ++ +  +R  + + + A 
Sbjct: 299 ARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLKDVVKNAR 358

Query: 365 VSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMV 404
             V     P    ++ RD  +++ +D   +  ++ +EK+M 
Sbjct: 359 NPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEMA 399


>gi|294678037|ref|YP_003578652.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
 gi|294476857|gb|ADE86245.1| ATP-dependent RNA helicase RhlE [Rhodobacter capsulatus SB 1003]
          Length = 448

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 193/370 (52%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ FEN+    ++ + L+  G    T +Q   +   +R +D+L  AQTG+GKT AFGL +
Sbjct: 1   METFENLGLAPMLLKNLAGLGLTKPTPIQAQGIPHIVRGRDILGLAQTGTGKTAAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +LA   R +P +   AL +APTRELA Q+   L        V +   +GG S++ + 
Sbjct: 61  LTRILAYGKRPAPKT-VRALVLAPTRELATQIHDNLAAYAEGAPVRIQRVVGGASLNVQA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D I  + L +S  K +VLDEAD+MLD+GF   +  I    P 
Sbjct: 120 EKLSKGCDVLIATPGRLIDLIERRALVLSETKYLVLDEADQMLDIGFIHALRRIAKLIPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   +  LA +Y  D +RV +A+  +    ID         ++   +   
Sbjct: 180 ERQTLLFSATMPKLMEELAASYLSDPIRVEVATPGKAAEKIDQGVHFTTQGEKAALLAEY 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  + A+VF  T+    + TK+L +  F V A+ G  SQ +R  AL   R    +V 
Sbjct: 240 ISRHPGELAVVFNRTKHGSDKLTKLLEKWGFSVTAIHGNKSQGQRERALSAFRASEVQVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +  V + +L + PEN +HR GRT RAGR G +V             
Sbjct: 300 VATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCGPLEMSDLRA 359

Query: 359 LFREANVSVV 368
           +       + 
Sbjct: 360 IEAAMGAKIP 369


>gi|222640394|gb|EEE68526.1| hypothetical protein OsJ_26968 [Oryza sativa Japonica Group]
          Length = 553

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 147/378 (38%), Gaps = 53/378 (14%)

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R   V+   + +A+  IL        I+F  T+A        L        A++G++ Q
Sbjct: 130 QRYWWVSGMHKLDALTRILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQ 189

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R   + M+++G+  + +ATDVAARG+D+  +  V++ ++  + E+ +HR GRTGRAGR
Sbjct: 190 AQRERTIAMLKEGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGR 249

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI---LQDPLFLDSIQ 397
            G ++       +    ++ R     +     PSVEA+ +    +    + + L    + 
Sbjct: 250 SGEAILFATPREKGMLRQIERATRQPIEEMQLPSVEAVNDTRINKFTSRISETLGTGGLD 309

Query: 398 GDEKKMVDVLLAKHDPE-KIAAGFLRIHRAG---LCAPEEITPVSLVSGRDRFRDDSRAF 453
              + +      ++ P  +IAA   R+ +     L  P    P    + R+RF    R  
Sbjct: 310 FYRQLLERFENEQNVPAIEIAAALARMLQGDTPFLLQPPVRAPREERAARERFDRGDRPE 369

Query: 454 KVGG--------------------------------GSRDNFKGSSWFSLSVGSKQKAEA 481
           +                                         +G   + +SVG +   + 
Sbjct: 370 RGDRFDRNERGPRFERGPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKP 429

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLG 537
             ++  +   +G+  + IG I +  D + +++ A    D +  L++     + +Q++ L 
Sbjct: 430 ANIVGAIANEAGLESRFIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRPLA 489

Query: 538 GE----------KPDFRG 545
                       KP F  
Sbjct: 490 AGEEINPAPRPFKPRFDK 507


>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 441

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 35  IRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPA 94

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 95  LQYL-QDFPRRKPGPA-RVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHA 152

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 153 DILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 212

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     +     +   D   ++     R+   I          +   A++ 
Sbjct: 213 RKQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLK 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  + A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 273 DIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 333 LLATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 392

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 393 RVARYVKEDIKE 404


>gi|116199007|ref|XP_001225315.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
 gi|118573324|sp|Q2GWJ5|FAL1_CHAGB RecName: Full=ATP-dependent RNA helicase FAL1
 gi|88178938|gb|EAQ86406.1| eukaryotic initiation factor 4A-12 [Chaetomium globosum CBS 148.51]
          Length = 394

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 194/374 (51%), Gaps = 15/374 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 28  TFESMSLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 88  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 142 LDYGQHIVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPAT 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 202 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R G +RV I
Sbjct: 262 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 322 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 381

Query: 360 FREANVSVVWEPAP 373
                   +W P+P
Sbjct: 382 E------CMWLPSP 389


>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
 gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 439

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 112/402 (27%), Positives = 188/402 (46%), Gaps = 18/402 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRILQD 389
            R           A +    +P     V+++ ++   RI + 
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARIKEK 405


>gi|119580652|gb|EAW60248.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, isoform CRA_h [Homo
           sapiens]
          Length = 547

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 184/366 (50%), Gaps = 8/366 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +      
Sbjct: 1   MDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ-PYLER 59

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L +APTRELA QV +  +     + +      GG     + RDL+ G  I + T
Sbjct: 60  GDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
            +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A+     
Sbjct: 180 EVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATDVA+RG
Sbjct: 240 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR---EAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +   EAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 359

Query: 365 VSVVWE 370
            ++  +
Sbjct: 360 QAINPK 365


>gi|38198641|ref|NP_938179.1| probable ATP-dependent RNA helicase DDX49 [Danio rerio]
 gi|28839770|gb|AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rerio]
          Length = 468

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 194/423 (45%), Gaps = 30/423 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++   + + +   + G    T+VQE  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MATFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGVFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+VV TPGRL DHIR         I  L     D   E     F  D+E IL 
Sbjct: 115 LELSKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILS 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              S+ +   ++D R +L     +D  
Sbjct: 175 AVPAKRQTLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F +T  S    T +L E  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KSNVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKK 402
                   +  +    +   P      I E++  +IL        Q  + L+S   DEKK
Sbjct: 355 YDIHLINAIEEQNQTKLKEFP------IEEKEVLKILTQVNVTRRQCEIKLESTDFDEKK 408

Query: 403 MVD 405
            ++
Sbjct: 409 KIN 411


>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 420

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 193/378 (51%), Gaps = 9/378 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N    + E L   G+   T +Q+  +     + D++  AQTG+GKT ++ L L 
Sbjct: 1   MDFSEFNFDDRLLEGLMSMGFKIPTPIQQQAIPVIAEKHDLIACAQTGTGKTASYLLPLM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---VAVCIGGVSVHR 116
             +   +DR S +    AL +APTRELA+Q+ ++++ L   TG+    V     GV   +
Sbjct: 61  DAICKNDDRPSIS----ALILAPTRELALQIDQQIQGLAYFTGITSIAVYGGGDGVGYEQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RR L+ G  IV+ TPGRL  H+    + +  +  ++LDEAD MLD+GF+DDI  I+   
Sbjct: 117 QRRSLKEGVDIVIATPGRLIAHMSSSTVRLEKIDFLILDEADRMLDMGFKDDILRIVRQL 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ L+FSAT+   I   A        +    + ++    I  +        +   + 
Sbjct: 177 PEQRQTLLFSATMPQKIRLFA-KALLKNPQQVNIAISQPAEKIKQQYYRTFDEQKVTLLK 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL      + I+FCST+ +V    K L ++  +V +   +L Q ER   L   ++ +  
Sbjct: 236 HILSTDSFYSIIIFCSTKENVKLLEKELFKNDLKVRSFHSDLQQDEREQILLDFKNRKLN 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDV +RGID+  ++LV++ ++  +PE+ +HR GRT RA R G ++  +     R+ 
Sbjct: 296 ILVGTDVLSRGIDIEGIDLVVNYDVPGDPEDYIHRIGRTARAERTGTAITFVNNRDFRKL 355

Query: 357 ERLFREANVSVVWEPAPS 374
             + +  + ++     P 
Sbjct: 356 LSIEKMMDRTIEEVQLPE 373


>gi|241737496|ref|XP_002414033.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215507887|gb|EEC17341.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 402

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F + +  
Sbjct: 30  TFDAIGLREDLLRGIYAYGFEKPSAIQQRSIKPVIKGRDVIAQAQSGTGKTATFSIGVLQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+  +           AL ++PTRELA Q+ + +  L     V    CIGG ++  + R 
Sbjct: 90  TIDTQ------MRETQALILSPTRELAGQIQKVILALGDYMNVQCHSCIGGTNLGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 144 LDYGQHIVSGTPGRVFDMIKRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPCT 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 204 QVVLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   ++ + E  F V ++ G++ Q+ER   ++  R G +RV I
Sbjct: 264 DTLTITQAVIFCNTKRKVDWLSEKMREANFTVSSMHGDMPQKERDAIMKEFRSGSSRVLI 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 324 TTDIWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 383

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 384 EQYYSTQIDEMPMNVADLI 402


>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Acyrthosiphon pisum]
          Length = 450

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 113/410 (27%), Positives = 218/410 (53%), Gaps = 13/410 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ E      +   T +Q+  +   L+ KD++  A+TGSGKT AF + +  
Sbjct: 20  TFKDLGVTDVLCETCETLKWKTPTKIQKEAIPVALQGKDIIGLAETGSGKTGAFAIPILQ 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R+       AL + PTRELA Q+  ++E L +  GV  AV +GG+ +  +   
Sbjct: 80  ALLENPQRY------FALILTPTRELAFQISEQIEALGSSIGVKCAVIVGGMDMMAQSLM 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++ TPGRL DH+      ++ +LK +V+DEAD +L++ F ++++ IL   P++
Sbjct: 134 LAKKPHIIIATPGRLVDHLENTKGFSLRNLKVLVMDEADRILNMDFEEEVDKILKVIPRE 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT++  +  L +    D VRV ++++ +    +    + + +  +D  +V+IL
Sbjct: 194 RRTFLFSATMTKKVQKLHRASLVDPVRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHIL 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VF +T     R   +L       + L G+++Q +R  +L   +     + I
Sbjct: 254 NEMAGNSFMVFMATCNGTVRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILI 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV++RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+
Sbjct: 314 STDVSSRGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRI 373

Query: 360 FR--EANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVD 405
            +     + +       V  ++ER  +AQR+ +  +     +  ++ + D
Sbjct: 374 EQLISKKLPLYQVEDDEVMCLQERVSEAQRLAKMNMKDMGDKKGKRDLDD 423


>gi|158257264|dbj|BAF84605.1| unnamed protein product [Homo sapiens]
          Length = 483

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 120/478 (25%), Positives = 198/478 (41%), Gaps = 23/478 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + + G+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVDGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +       +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL----LAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++      L   D
Sbjct: 363 IEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           P+  A   A   +I +      E++          R     R  +   GS      S 
Sbjct: 423 PDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQ 480


>gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 431

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 179/370 (48%), Gaps = 3/370 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     + + L+++GY   T +Q   +   L  +D+   AQTGSGKT AF + +
Sbjct: 1   MTQFKDLKLSSKLLKTLADKGYSTPTDIQREAIPLILEGRDIQGIAQTGSGKTGAFSIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L           A  AL + PTRELA Q+  ++E       +  AV  GG     + 
Sbjct: 61  IENLSRSKQVVKAKRA-RALILTPTRELANQINGQVEIYSKGMNLSSAVIFGGDGPLNQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +++ TPGRL D ++   + +  L+  VLDEAD MLD+GF  DIE I++  PK
Sbjct: 120 RKLATGVDLLIATPGRLLDFLQRGHIKLDELETFVLDEADRMLDMGFIKDIEKIIERLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+   I+ LA         + ++  +     I    + +    +   +  I
Sbjct: 180 KRQTLFFSATMPKDISKLASTILTRPKIIEVSPPSTPVESIAQYLIHIDRVQKPKLLKKI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +    +++ IVF  T+    R  K L +   +  ++    SQ  R  AL   R+ + +  
Sbjct: 240 INESVSESVIVFTRTKYGADRVCKHLMKAGIESSSIHSNRSQGAREKALAAFRNKKIKAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ ++    E+ +HR GRT RAG+ G++         +  + 
Sbjct: 300 VATDIAARGIDVDGISHVINYDVPLEAESYIHRIGRTARAGKSGVAYTFCDPAETKSLKA 359

Query: 359 LFREANVSVV 368
           + +     + 
Sbjct: 360 VEKLLGFKIK 369


>gi|153009579|ref|YP_001370794.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561467|gb|ABS14965.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 498

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 191/375 (50%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     +  A+   GY   T +Q   + P L  KDVL  AQTG+GKT +F L +
Sbjct: 15  LTTFAELGLSPKVLAAVEAAGYSAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPM 74

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV            + VA+ IGGVS   + 
Sbjct: 75  LTLLEKGRAR---ARMPRTLILEPTRELAAQVEENFTKYGVNHRLNVALLIGGVSFDEQE 131

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P 
Sbjct: 132 RKLERGADVLIATPGRLLDHFERGKLLLTGVEILVIDEADRMLDMGFIPDIERICKLIPF 191

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT+ P IT L + +     RV +A  +     +  R V  +  D D   V  
Sbjct: 192 TRQTLFFSATMPPEITKLTEQFLHSPTRVEVAKASSTAKTVTQRLVKSSKKDWDKRAVLR 251

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     KNAI+FC+ +  VS   + L  H F   AL G++ Q+ R   L   ++G+
Sbjct: 252 DLVRAEGDTLKNAIIFCNRKKDVSELFRSLTRHEFNAGALHGDMDQRARMTMLANFKEGK 311

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++  +  +
Sbjct: 312 LQLLVASDVAARGLDIPDVSHVFNFDVPIHSEDYVHRIGRTGRAGRSGKAFTIVTPSDTK 371

Query: 355 RAERLFREANVSVVW 369
               +       + W
Sbjct: 372 YLAAIENMIGEKIEW 386


>gi|115373138|ref|ZP_01460440.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
 gi|115369894|gb|EAU68827.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
          Length = 606

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 220/477 (46%), Gaps = 25/477 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     +A+    + + T +Q   + P L  +DV+  A TG+GKT A+ L L   L  E 
Sbjct: 37  LSSESLDAVRRARFASPTPIQAQAIPPALAGRDVIGCAVTGTGKTAAYLLPLVERLAGE- 95

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL +Q+ +E  +     G+  AV  GG  +  +   L+    
Sbjct: 96  ------RGPVGLVLAPTRELVLQIAQEAAFFGEPRGLTQAVVTGGTDMGAQVEALRQRPT 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D ++    N+S ++ +VLDEAD  L++GF  +++ IL + P++R+ L+FS
Sbjct: 150 LVLATPGRLADLLKEGVANLSAVRMLVLDEADRTLEMGFMPELQQILAALPRERQTLLFS 209

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +T  A+   +  VRV +       +    R   V  S++   ++++L       
Sbjct: 210 ATLGHNVTRFAQEVLRKPVRVEVTPSGTPAARAVQRLYEVEASEKYPLLLSLLAKDQLS- 268

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  TR    +  +VL     +  A+  + +Q +R  AL+  R G+ R  +ATD+A+R
Sbjct: 269 VLVFTRTRERAEKVQEVLKRAGHKTAAIHADRTQGQRRQALEGFRRGQYRCLVATDIASR 328

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  VI+ +L   PE+ +HR GRT RAG  G +   +    +     + R     
Sbjct: 329 GLDVEDIGHVINFDLPHAPEDYVHRIGRTARAGASGRASTFVTSRDEETVRAIER----- 383

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK----HDPEKIAAGFLR 422
           +V    P  E  RE        DP+F++ ++  +    D  L K      P  ++A   R
Sbjct: 384 IVRMSLPRAEVPRE--------DPVFVEELEEFQAGQEDAELTKPRGLPRPTGVSAKGGR 435

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                  A +      ++ G +   D     +   G   +   S   S   G  + A
Sbjct: 436 RGGGRARAVDAFPSDEVLPGWEEPGDKGPTRRGNSGREADRTHSRPTSGGRGKARGA 492


>gi|82523824|emb|CAI78566.1| hypothetical protein [uncultured candidate division OP8 bacterium]
          Length = 453

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 192/386 (49%), Gaps = 7/386 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL E G+   T +Q   + P +  +DV+ SA TGSGKT AF L +   L+  
Sbjct: 7   HLHPTLLKALKELGFPRPTPIQADAIPPAMSGRDVMASAVTGSGKTAAFLLPILHQLIDR 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL I PTRELA Q+  +L  L   T +  A   GGVS+  +    + G 
Sbjct: 67  -----PRGTTRALVITPTRELAAQILEDLNDLAVHTPISAAAVFGGVSIRPQEHAFRRGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++GTPGRL DH R     ++ L+ +VLDEAD MLD+GF  DI  IL   P +R+ L F
Sbjct: 122 DVLIGTPGRLLDHFRAPYAKLAGLEHLVLDEADRMLDMGFLPDIRRILKHIPARRQTLFF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+   ++   VNI       + I      VA   +   +V +L+    +
Sbjct: 182 SATMPAPIGVLAREMLRNPATVNINRIAAPAAGITQAVYPVAQELKAALLVALLKRDDIR 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+   +R  + L     +   + G  SQ  R+ AL   + G+ RV +ATD+AA
Sbjct: 242 DALVFTRTKHRANRLAEHLVRQGIKAERIHGNRSQGRRTEALAGFKAGKYRVLVATDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L  V++ ++   P++ +HR GRT RA   G +   +    Q    R+ R    
Sbjct: 302 RGIDVTELGHVVNFDVPLVPDDYIHRVGRTARAEATGDAFTFVSPQEQGDLTRIERVIGK 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPL 391
            +     P  +       +  L+ PL
Sbjct: 362 QLPRITVPDFD--YRARTESRLEVPL 385


>gi|256073063|ref|XP_002572852.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658018|emb|CAZ29084.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 769

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 185/369 (50%), Gaps = 5/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  I   +++ G+   T +Q       L  +DV+  AQTGSGKT +F L     ++A+
Sbjct: 98  NVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTASFLLPAVIHIMAQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L + PTRELA QV    +       +      GG +   + R++Q G 
Sbjct: 158 -PRLLRNEGPICLILVPTRELAQQVLVVAKEFADAASLRAMCFYGGSAKGTQLREMQKGG 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D IR +   +S +  +VLDEAD MLD+GF   I  I+  +   R+ LM+
Sbjct: 217 EICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKIIGHTRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    + TLA+ +  D ++VNI S +   + +I     ++    ++  ++ +L   G 
Sbjct: 277 SATWPREVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWSKEQRLIELLTSFGR 336

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    + T  L    F V A+ G   Q++R   L   + GR  + +ATDVA
Sbjct: 337 ARTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLANFKSGRMNILVATDVA 396

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFR 361
           +RG+D+ ++E V++ +  +  E+ +HR GRT R+ + G +         R+A     +  
Sbjct: 397 SRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKTGTAFTFFTHKNVRQARDLIDILD 456

Query: 362 EANVSVVWE 370
           EAN  +  E
Sbjct: 457 EANQEISAE 465


>gi|218194025|gb|EEC76452.1| hypothetical protein OsI_14162 [Oryza sativa Indica Group]
          Length = 779

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 156/553 (28%), Positives = 253/553 (45%), Gaps = 51/553 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQ--------------EAILNPDLREKDVLVSAQTGSGKTV 52
           +P+ +   L +RG  +L  +Q               A+L P L  +D++  A+TG+GKT+
Sbjct: 118 LPEQLVSTLEKRGITHLFPIQVSVLGGDSEGIGVSRAVLIPALDGRDLIARAKTGTGKTL 177

Query: 53  AFGLALASTLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           AFG+ +   L+ E+D  S      P  L +APTRELA QV +E++    K   V     G
Sbjct: 178 AFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVC--VYG 235

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GVS + ++  L  G  +VVGTPGR+ D I G  L +  +K +VLDEAD+ML +GF +D+E
Sbjct: 236 GVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVE 295

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVA 227
            IL   P +R+ ++FSAT+   +  L++ Y  + + ++      E        Y   L +
Sbjct: 296 TILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTS 355

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S R      I  Y      IVF  T+   +    +   +     AL G++SQ +R   L
Sbjct: 356 TSKRTVLSDLITVYAKGGKTIVFTKTKR-DADEVSLALTNSIASEALHGDISQHQRERTL 414

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R G+  V +ATDVAARG+D+P+++L+IH EL ++PE  +HRSGRTGRAG+ G ++ +
Sbjct: 415 NGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILM 474

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LFLDSIQGDEKKMVD 405
              + +R    L R+      +   P++E + E  A+ ++     +  +SIQ       +
Sbjct: 475 FTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQ-YFIPAAE 533

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            L  +  P  +A+     H +G   P     +            +R    G G       
Sbjct: 534 RLQEELGPNALASALA--HLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG------- 584

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGVDLL 521
              F            R +   L   S      +G I +  D        ++  +    L
Sbjct: 585 ---FF---------SPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDL 632

Query: 522 RRTVKLDKGIQLK 534
             +++L  G  + 
Sbjct: 633 L-SMELPPGNTIT 644


>gi|304392205|ref|ZP_07374147.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
 gi|303296434|gb|EFL90792.1| ATP-dependent RNA helicase RhlE [Ahrensia sp. R2A130]
          Length = 536

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 189/362 (52%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   L+  G  + T +Q   +   L  +DV+  AQTG+GKT AFGL L   LL++ 
Sbjct: 41  LSKRVVRPLAVLGLKDPTPIQTNAIPLVLEGRDVMGLAQTGTGKTAAFGLPLIDRLLSDG 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P  +  AL +APTREL  Q+   L     KT V V+  +GG +++ + R L  G  
Sbjct: 101 DKVQP-RSVRALILAPTRELVNQIADNLRAYVKKTPVWVSSVVGGQNINTQIRHLAKGTD 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  K + +   K +VLDEAD+MLD+GF   +  I     + R+ L+FS
Sbjct: 160 VLVATPGRLLDLVDRKAVKLDTAKYLVLDEADQMLDMGFIHALRRIEPLLGRPRQTLLFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L+K+Y  +  R+ +A   +    +      +A  D+ N +  +L       
Sbjct: 220 ATMPKLVEELSKSYLTNPERIEVARAGKAADKVRQSVHYIATKDKLNLLSKLLAERPDDL 279

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           ++VF  T+    +  K L    F   ++ G  SQ +R  AL+  + G  R+ +ATDVAAR
Sbjct: 280 SLVFGRTKHGCEKLMKQLVAQGFAAASIHGNKSQGQRDRALREFKSGAVRILVATDVAAR 339

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V +  L   PEN +HR GRT RAGR G +V     + ++    + R  N  
Sbjct: 340 GIDIPAVSHVYNFNLPEVPENYVHRIGRTARAGRDGEAVAFCAPDERKMLRDIQRLMNFD 399

Query: 367 VV 368
           + 
Sbjct: 400 IE 401


>gi|72389634|ref|XP_845112.1| nucleolar RNA helicase II [Trypanosoma brucei TREU927]
 gi|62176655|gb|AAX70758.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|62360172|gb|AAX80591.1| nucleolar RNA helicase II, putative [Trypanosoma brucei]
 gi|70801646|gb|AAZ11553.1| nucleolar RNA helicase II, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
 gi|261328479|emb|CBH11456.1| nucleolar RNA helicase Gu, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 632

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 146/549 (26%), Positives = 235/549 (42%), Gaps = 41/549 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL  +G V+L  VQ       +R +DVLV A+TGSGKT+AFG+ +   L  +
Sbjct: 51  NLSSGMVKALEAQGIVSLFPVQALTFEAIMRGEDVLVQARTGSGKTLAFGIPIVEKLNKK 110

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P A+   PTRELA+QV   L  +      VVA   GGV+   + R L +G 
Sbjct: 111 EGPLARGRGPAAVIFCPTRELAIQVRDVLAGVSGDL--VVAALYGGVAYSTQERVLFSGV 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR  D +    L+   +K V LDEAD MLD+GF++DIE +L    ++      
Sbjct: 169 DIVVATPGRAKDFLEKGTLHFERVKMVCLDEADHMLDIGFKEDIELLLQRVAEQNGSTPD 228

Query: 186 SATISP----AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------- 234
                     A      +      +     +      +     +     +          
Sbjct: 229 EPKHQTLLFSATVPDWVHTCSFISKNKKFIDMVGQGAMRAANTIRFYRRKCGFAEVSSML 288

Query: 235 -IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             +  +        ++F +T+      +    +   Q +   G++ Q++R + ++  RD 
Sbjct: 289 ADLVKVYSGRHGRTLIFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTMKSFRDN 346

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V +     +
Sbjct: 347 KFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLLHQPKDE 406

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHD 412
              ER+ R A +     PAP+ E I +  A+   +D   ++ S           LL   D
Sbjct: 407 YVVERIERHAKIKFEVLPAPTREEILKAVARDAAEDMARVERSATNLFMDQAAELLKDAD 466

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           P +I A  + +      +   IT   L+SG    R  +    +G  S       S    +
Sbjct: 467 PTEILASAIAVMSGYTSS---ITKRGLISG---ARGSATVQMLGQRSLPTHVFCSILRNN 520

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           +G +     R +  +L  + G                  +V  D VD +  T    +G++
Sbjct: 521 LGDELFMRCRDI-TLLQDAPG---------------CVFDVPEDVVDRILNTPV--QGME 562

Query: 533 LKYLGGEKP 541
           L  +    P
Sbjct: 563 LSVIETLPP 571


>gi|78224228|ref|YP_385975.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
 gi|78195483|gb|ABB33250.1| ATP-dependent RNA helicase RhlB [Geobacter metallireducens GS-15]
          Length = 438

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 213/398 (53%), Gaps = 6/398 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+P+++   +++ G+ + T +QE  L   L  KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFTDLNLPELVQRGIADTGFTDCTPIQEKTLPLALSGKDVAGQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +N        P AL +APTREL VQ+ ++ + L A  G V+    GGV   ++R 
Sbjct: 61  TRLL-KNPTEGETRNPRALILAPTRELVVQIEKDAQALGAHCGFVIQAIYGGVDYMKQRS 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKEGADVVVGTPGRLIDYLKQKVYSLKEIEVLVIDEADRMFDMGFIADLRFILRRLPPF 179

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT++  +  LA  +     +V +  E      ++     V   ++   ++ 
Sbjct: 180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+       + L  + F    +SG++ Q++R   L+  ++G+  +
Sbjct: 240 LLRKKGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRMRILEDFKNGKLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  ++     E
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +       +  E A   + +   D +R+   P   ++
Sbjct: 360 AIHEYIKDKIPVEWAE--DDLFVHDFKRVKPKPKGHET 395


>gi|126308848|ref|XP_001379329.1| PREDICTED: similar to DDX5 protein [Monodelphis domestica]
          Length = 865

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 351 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 410

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 411 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGV 469

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 470 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 529

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 530 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 589

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 590 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 649

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 650 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 709

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    +E 
Sbjct: 710 VLREANQAINPKLLQLIED 728


>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
 gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
           [Aliivibrio salmonicida LFI1238]
          Length = 495

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 131/462 (28%), Positives = 211/462 (45%), Gaps = 6/462 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+  +GY   + +Q   +   +  KDV+ +AQTG+GKT  F L L   L    
Sbjct: 8   LSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLERL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL + PTRELA QV   +E       +   V  GGV  + + + L+ G  
Sbjct: 66  GQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI+ IL+  PK R+ L+FS
Sbjct: 126 VLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++A+ N     ++    +V  + +   +  +++ +  K 
Sbjct: 186 ATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKDNDWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L E      A+ G  SQ  R+ AL   + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  VI+ +L   PE+ +HR GRTGRAG  G ++  + ++       + R     
Sbjct: 306 GLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFAIERLIQKI 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +        E   +    R+   P+     +      V+    +   E  +       + 
Sbjct: 366 LPRHTLEGFEPEMKVPESRLDSRPIKAKKPKKTHAPRVEHKDGQRSGENRSG----HKQG 421

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              AP   T     + +    +  +    GG  R    G + 
Sbjct: 422 AKPAPRRNTENKDGAAKKEGGNAKKRPTDGGKPRSKGNGENR 463


>gi|147861063|emb|CAN78736.1| hypothetical protein VITISV_003102 [Vitis vinifera]
 gi|297743544|emb|CBI36411.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 21/400 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 141 IKNFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 200

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E       P   P  L I P+RELA Q    +E             +   +CIG
Sbjct: 201 IMVALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI 
Sbjct: 261 GVDMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 321 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 381 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAIRE 380
           N         + L +EA   +        +P   V+AI +
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITD 539


>gi|71281612|ref|YP_268332.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71147352|gb|AAZ27825.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 455

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 125/421 (29%), Positives = 204/421 (48%), Gaps = 22/421 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY NLT +Q+  +    +  D+L SAQTG+GKT AF L +   +   N
Sbjct: 8   LSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKAN 67

Query: 67  ----------------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                           ++ +   A  AL + PTRELA QV   ++       +   V  G
Sbjct: 68  HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYG 127

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + + L+ G  ++V TPGRL +H+  + +++S +K +VLDEAD MLD+GF  DIE
Sbjct: 128 GGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIE 187

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +L +   K + LMFSAT S  + +LA    K    ++++ EN     I      V    
Sbjct: 188 KLLLAVKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEER 247

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  ++  +  +  +VF  T+ S +   K L     +     G+ +Q  R+ AL+  
Sbjct: 248 KRELLSELIGVNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQF 307

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +G+ RV +ATDVAARG+D+PDL  V++  L   PE+ +HR GRTGRAG+ G ++ ++  
Sbjct: 308 SEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSP 367

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             +R  E + +          AP  E        R+        +++ D K        K
Sbjct: 368 KDERFLENIEQLIERKFERIVAPGYE------FNRLEASEYQEATVKRDSKNRYRAAQEK 421

Query: 411 H 411
           +
Sbjct: 422 N 422


>gi|2500527|sp|Q61656|DDX5_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box RNA helicase DEAD1; Short=mDEAD1; AltName:
           Full=DEAD box protein 5; AltName: Full=RNA helicase p68
 gi|51263|emb|CAA46581.1| p68 RNA helicase [Mus musculus]
          Length = 614

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 184/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++   +   T++Q       L   D++  AQTGSGKT+++ L     +   
Sbjct: 100 NFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHH 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|253700068|ref|YP_003021257.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774918|gb|ACT17499.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 490

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 197/373 (52%), Gaps = 4/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  IP  + + + E G+   T +QE  L   L  KDV   AQTG+GKT  F +++ 
Sbjct: 1   MKFTELKIPAEVQKGIDETGFTQCTPIQEKALPLALTGKDVAGQAQTGTGKTATFLISIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL++  +      P AL +APTREL VQ+ ++ + L   TG  +    GGV   ++R 
Sbjct: 61  TKLLSQA-KTGGEHHPRALILAPTRELVVQIEKDAQALGKYTGFNIQAIYGGVDYMKQRD 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA IV+GTPGRL D+++ K  ++  ++A+V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKAGADIVIGTPGRLIDYLKQKVYSVKDVEALVIDEADRMFDMGFIADLRFILRRLPPY 179

Query: 180 RRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +     FSAT++  +  LA  +     +V++  E      ++     V+  ++   ++ 
Sbjct: 180 DKRQNLLFSATLNTRVMELAYEFMNMPEKVSVTPEQMTAERVEQVLYHVSRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+         L  + F    +SG++ Q++R   L   +DG   +
Sbjct: 240 LLRKMGMERTMIFVNTKREAEYLQDRLNANEFPGKVISGDVEQRKRMKILADFKDGTLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RGI +  +  VI+ +L  + E+ +HR GRT RAG +GM++    ++     E
Sbjct: 300 MIATDVASRGIHIEGVSHVINYDLPQDCEDYVHRIGRTARAGAEGMAISFADEDGAFYIE 359

Query: 358 RLFREANVSVVWE 370
            +       +  E
Sbjct: 360 PIEDFIKQKIPTE 372


>gi|229522888|ref|ZP_04412302.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
 gi|229340105|gb|EEO05113.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae TM 11079-80]
          Length = 464

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 185/355 (52%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PKV-RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  + + +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVMNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|156052539|ref|XP_001592196.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980]
 gi|160385735|sp|A7EM88|FAL1_SCLS1 RecName: Full=ATP-dependent RNA helicase fal1
 gi|154704215|gb|EDO03954.1| eukaryotic initiation factor 4A-12 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 399

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|262164808|ref|ZP_06032546.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
 gi|262027188|gb|EEY45855.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM223]
          Length = 464

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PRV-RANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|258624900|ref|ZP_05719828.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582898|gb|EEW07719.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 451

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PRV-RANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAIKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|71001454|ref|XP_755408.1| RNA helicase (Dbp) [Aspergillus fumigatus Af293]
 gi|66853046|gb|EAL93370.1| RNA helicase (Dbp), putative [Aspergillus fumigatus Af293]
 gi|159129480|gb|EDP54594.1| RNA helicase (Dbp), putative [Aspergillus fumigatus A1163]
          Length = 565

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 28/394 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 120 VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 179

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 180 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 238

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 239 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 298

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA ++  D ++VNI S     N + + I          D+   
Sbjct: 299 DRQTCMWSATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIK 358

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +  + +   ++F  T+      T+ L +  +  +++ G+  QQER   L   + G+
Sbjct: 359 HLEKIMENRSNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 418

Query: 295 ARVCIATDVAARGI------------------DLPDLELVIHAELSSNPENLLHRSGRTG 336
           + + +ATDVA+RGI                  D+ D+  V++ +  +N E+ +HR GRTG
Sbjct: 419 SPIMVATDVASRGIGLVAIFTNALFANLNLFKDVRDITHVLNYDYPNNSEDYIHRIGRTG 478

Query: 337 RAGRKGMSVFVIPQNMQRRAER---LFREANVSV 367
           RAG KG ++        ++A     +  EA   +
Sbjct: 479 RAGAKGTAITFFTTENSKQARDLVTILTEAKQQI 512


>gi|75076425|sp|Q4R6M5|DDX5_MACFA RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|67969804|dbj|BAE01250.1| unnamed protein product [Macaca fascicularis]
          Length = 614

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|320539202|ref|ZP_08038873.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320030840|gb|EFW12848.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 440

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 199/418 (47%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL ++GY   T++Q   + P +  +DVL SA TG+GKT AF L +   LL  
Sbjct: 10  ELDERLIIALHDKGYDRPTAIQAEAIPPAMNGRDVLGSAPTGTGKTAAFLLPVLQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+F
Sbjct: 128 DMVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEIISAETRWRNQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +  ++        S   +   + +      +  +   +V++L+   
Sbjct: 188 SATLEGEAIHAFAERILKEPVKVEADPSRRERKKILQWYYRADDVQHKTALLVHLLKQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +++F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRIDVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +  R   ++ R  
Sbjct: 308 AARGLDIIDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHRLLGKVGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKI 416
           N      V+ E  P  +   E+   +  +  L      +   K+   V +   D + +
Sbjct: 368 NEPLKPRVIDELRPKTKVPNEKSNGKPSKKVLAKRMQDKAKNKEKAKVKVRHRDTKNV 425


>gi|197337401|ref|YP_002157747.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
 gi|197314653|gb|ACH64102.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Vibrio fischeri MJ11]
          Length = 462

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 7/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L   GY  +T +Q   L   L+ KDV+   +TGSGKT AFGL L + L  +
Sbjct: 10  DLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GGV    +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+
Sbjct: 124 AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A     D +           S   +   +    DR  A+  +L  H  
Sbjct: 184 FSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L  + F V AL G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ V++ ELS +PE  +HR GRTGRAG KG+++ +  +       ++    N
Sbjct: 304 ARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMN 363

Query: 365 VSVVWEPAPSVEAIRE 380
           + +  E  PS + ++E
Sbjct: 364 IDIRDEALPSADYLKE 379



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 447 RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           RD++            +       +  G K K     ++  L    GI  + +G I V  
Sbjct: 367 RDEALPSADYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKINVFD 426

Query: 507 DLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
              +V V         + ++  K   +K         RG
Sbjct: 427 FHAYVAVHNTVAKAALKKLESGK---MKGRSFRVSRMRG 462


>gi|192359134|ref|YP_001980830.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
 gi|190685299|gb|ACE82977.1| DbpA RNA binding domain family [Cellvibrio japonicus Ueda107]
          Length = 469

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/423 (34%), Positives = 223/423 (52%), Gaps = 22/423 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +P  + + + L+   Y ++T +Q   L   L  +D++  A+TGSGKT AFG+ L  
Sbjct: 16  TFSTLPLSRAMLDNLASLEYTSMTPIQAESLPWVLAGRDLIAQAKTGSGKTAAFGIGLLE 75

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  +      + A  AL + PTRELA QV +EL  L   T    +    GGV++  +  
Sbjct: 76  KLQVD------SFAVQALVLCPTRELADQVAKELRRLARFTHNIKILTLCGGVAIGPQLG 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGR+ DH+R   L++  L+ +VLDEAD MLD+GF DDI  ++ S+  +
Sbjct: 130 SLERGAHIVVGTPGRIVDHLRKGSLHLDRLQQLVLDEADRMLDMGFADDINTVIASANSE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  ++  YQ+D VRV + S +       +   L     R +A++N+L
Sbjct: 190 RQTLLFSATYPANIQQMSARYQRDPVRVTVESLHTSQQIRQHFYELAEGDSRTSAVINLL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +    + ++FC+T+A        L       +AL G++ Q+ER   L    +    V I
Sbjct: 250 AHFQPASTLIFCNTKAECEELADGLQAKKVAALALHGDMEQKERDRVLVRFANKSCAVLI 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ DL+ VI+ EL+ + E  +HR GRTGRAG +G+++ ++      R  RL
Sbjct: 310 ATDVAARGIDIKDLDAVINYELARDSEVHVHRIGRTGRAGAEGLALSLVAPREIVRVNRL 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                 ++      S+EA+ + D   + Q  +   +I G +K  +        P  I   
Sbjct: 370 EDYLRQTI------SLEAVPDSDTNSLPQPVMATLNIDGGKKDKLR-------PGDIIGA 416

Query: 420 FLR 422
             +
Sbjct: 417 LTK 419



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 36/103 (34%)

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            L AP EI  V+ +    R      A      +       +  ++  G K K     ++ 
Sbjct: 356 SLVAPREIVRVNRLEDYLRQTISLEAVPDSDTNSLPQPVMATLNIDGGKKDKLRPGDIIG 415

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L + +G+  + IG I +     +V V         R ++  K
Sbjct: 416 ALTKDAGLPFEKIGKIDIFDFAAYVAVDRSIARAALRQLQEGK 458


>gi|156100409|ref|XP_001615932.1| helicase [Plasmodium vivax SaI-1]
 gi|148804806|gb|EDL46205.1| helicase, putative [Plasmodium vivax]
          Length = 528

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/390 (28%), Positives = 179/390 (45%), Gaps = 6/390 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVLKSLKNNNIVTPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 179 PSLKYGDGPIVLVMAPTRELAEQIRQECIKFSIESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I++     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFEIQIRKIVEQIRPDRQTLMWS 298

Query: 187 ATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--VNILRYH 242
           AT    + +       Q+       +        I     L+   ++   +  +    + 
Sbjct: 299 ATWPKEVQSLARDLCKQQPIHVNVGSLTLTACRRIKQEIYLIEEHEKIANLKLLLQRIFR 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+ +    TK L       + + G+  Q ER   L   + G++ + IATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGVPALCIHGDKKQDERRWVLNDFKTGKSPILIATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G S   +  +  R A  L + 
Sbjct: 419 VASRGLDIKDVKYVINFDFPNQIEDYVHRIGRTGRAGAHGASFTFLTSDKYRLARDLVKI 478

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
              S    P P +E I         ++P +
Sbjct: 479 LRESEQPVP-PQLEKISYTAVNNPRRNPYY 507


>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
 gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
          Length = 413

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 192/385 (49%), Gaps = 2/385 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E+GY   T +Q   +   LR +DV+  A TG+GKT  F L +   L    
Sbjct: 8   LCDELVKAVTEQGYTQPTPIQVEAIPVVLRLRDVMAVANTGTGKTAGFTLPMVQLL--SG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +   +  AL I PTRELA QV + ++     T +  AV  GGV +  +   L  G  
Sbjct: 66  GAIAQPKSVRALVITPTRELAAQVAQNVQDYSRHTNISSAVVFGGVRIEPQIAQLATGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +N + L+ +VLDEAD MLDLGF DDI  I    P +R+ LMFS
Sbjct: 126 VLVATPGRLVDLYNQQAINFNQLELLVLDEADRMLDLGFIDDIRHIQTLLPSERQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LAK    +   + ++  N     +  +   V  + +  A++ +L+ H  + 
Sbjct: 186 ATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVDKTRKSEALIYLLKKHQWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L        ++    +Q  R++AL   + G  +V +ATD+A+R
Sbjct: 246 VLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHARTHALNGFKSGEIKVLVATDIASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    E+ +HR GRTGRAG  G+++ +   +   + + + R    +
Sbjct: 306 GIDVNQLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQAIERLLGRT 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPL 391
           +  E  P+     ++   +   D  
Sbjct: 366 LAREVLPNFAPSEKKAVSKFDDDEY 390


>gi|325116173|emb|CBZ51727.1| putative ATP-dependent helicase, putaive [Neospora caninum
           Liverpool]
          Length = 395

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 192/379 (50%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++    + +   +   G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L    
Sbjct: 23  TFDSMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQ 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +         P AL ++PTRELA Q  +    L     V V  CIGG  V  + R 
Sbjct: 83  CIDPK------VRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRA 136

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+   I  +  +  H+K +VLDEADEML+ GF++ +  I    P   
Sbjct: 137 LEAGVHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPST 196

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D  RV +  +      I    V +     + + + ++ 
Sbjct: 197 QVVLVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLY 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+A V    + + E  F V  + G++ QQER   ++  R G++RV I
Sbjct: 257 DTLTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLI 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV  RG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 317 ATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 376

Query: 360 FREANVSVVWEPAPSVEAI 378
            +     +   P    + I
Sbjct: 377 EQYYATQIDEMPMNVADLI 395


>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 439

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 189/402 (47%), Gaps = 18/402 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVTRGIVFVRRREDVRELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRILQD 389
            R           A +    +P     V+++ ++   RI + 
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARIKEK 405


>gi|45709504|gb|AAH67585.1| Ddx5 protein [Danio rerio]
          Length = 496

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 187/385 (48%), Gaps = 9/385 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N P+ + + ++++ + + T +Q       L  KD++  AQTGSGKT+++ L   
Sbjct: 96  VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +        + +      GG     + R
Sbjct: 156 VHINHQ-PFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIR 214

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 215 DLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 274

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAI 235
           R+ LM+SAT    +  LA+++ K+ +++N      S N     I          D+   +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRL 334

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+      T+ +    +  + + G+ +QQER   L   + G+A
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKA 394

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +      N  ++
Sbjct: 395 PILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
           A  L    REAN ++  +     E 
Sbjct: 455 AHDLVSVLREANQAINPKLIQMAED 479


>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
          Length = 404

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  
Sbjct: 32  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIAPVIKGRDVIAQAQSGTGKTATFSISILQ 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +            L ++PTRELAVQ+ + +  L     V    CIGG +V  + R 
Sbjct: 92  SLEIQT------RETQILVLSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDVRK 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 146 LDYGQHIVSGTPGRVFDMIRRRTLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 206 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R+G++RV I
Sbjct: 266 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDTIMKEFRNGQSRVLI 325

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 326 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 385

Query: 360 FREANVSVVWEPAPSVEAI 378
            +     V   P    + I
Sbjct: 386 EQYYATQVDEMPMNVADLI 404


>gi|297745244|emb|CBI40324.3| unnamed protein product [Vitis vinifera]
          Length = 472

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 171/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 100 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 159

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 160 IDQDNNVI------QVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 213

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 214 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQ 273

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 274 ILLFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 332

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 333 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 392

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 393 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 452

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 453 ELGTEIKQIPPHIDQAI 469


>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
 gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
          Length = 439

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 175/365 (47%), Gaps = 6/365 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREAN 364
            R   
Sbjct: 364 KRYTE 368


>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
 gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
          Length = 423

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 182/364 (50%), Gaps = 6/364 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   +   GY   T +Q   +   ++ +DV+  AQTG+GKT AF L +   L+  
Sbjct: 7   NLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPILQRLMN- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL +APTRELA Q+   +  +   T +      GGVS + +   L+ GA
Sbjct: 66  ----GPGKMVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL D +     ++S ++  VLDEAD M D+GF  +I  I    P+KR+ L+F
Sbjct: 122 EIIVACPGRLLDLVAQGVADLSGIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I +LAK+   D + +     +   S + +    V    +   ++ +L+    +
Sbjct: 182 SATMPADIRSLAKDILHDPLTI-RIGNDIPVSTVSHTLYPVEQHLKTALLIKLLKETDTE 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+   +R    + +  F V +L G+LSQ +R  AL   R+G+ R+ IATD+AA
Sbjct: 241 SVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILIATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++    E   HR GRTGRA + G +   +    +   + +      
Sbjct: 301 RGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVDSIEYVLGK 360

Query: 366 SVVW 369
            +  
Sbjct: 361 QIAR 364


>gi|62857657|ref|NP_001016781.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 186/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 88  NFPQYVLDVLIDQRFKEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAMVHINHQ 147

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 148 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKSSRLKSTCIYGGAPKGPQIRDLERGV 206

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 207 EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 266

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V++NI +     +        +   S++D+ ++ ++    A
Sbjct: 267 SATWPKEVRQLAEDFLRDYVQINIGNLELSANHNILQIVDVCQESEKDHKLIQLMEEIMA 326

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQQER   L   R G+A + IAT
Sbjct: 327 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQQERDWVLCEFRTGKAPILIAT 386

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +            R   +
Sbjct: 387 DVASRGLDVEDIKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELVK 446

Query: 359 LFREANVSVVWE 370
           +  EAN ++  +
Sbjct: 447 VLEEANQTINPK 458


>gi|158299881|ref|XP_319893.3| AGAP009135-PA [Anopheles gambiae str. PEST]
 gi|157013731|gb|EAA14695.3| AGAP009135-PA [Anopheles gambiae str. PEST]
          Length = 430

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 42  FEEFCLKRPLLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLEQ 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 102 VDPTKDYI------QALIIVPTRELALQTSQICIELAKHMNIRVMVTTGGTNLKDDIMRI 155

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  +  N+S  + +VLDEAD++L   F+  ++ ++   PK+R+
Sbjct: 156 YQKVQVIIATPGRILDLMDKEVANMSQCRMLVLDEADKLLSQDFKGMLDHVIMRLPKERQ 215

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    + + +D   +N+  E             V    + + +  +   
Sbjct: 216 ILLFSATFPLSVKNFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   + Q  R+      R G  R  + +
Sbjct: 275 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMQQAHRNRVFHDFRSGLCRNLVCS 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 335 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 394

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 395 ELGTEI--KPIPKV 406


>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 455

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 214/422 (50%), Gaps = 11/422 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   + + +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +
Sbjct: 8   VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              LL             P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+
Sbjct: 68  LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
              ++   L    H++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL+  P++R+  +FSAT++  +  L +   ++ V++  AS+      +  +   VA   +
Sbjct: 188 ILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D  +V IL       +++F  T         VL    F+ + +SG+++Q +R  AL   +
Sbjct: 248 DCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 ++ +     +   PA   E  ++ ER A+      + +    G +++  D   +
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEES 427

Query: 410 KH 411
           + 
Sbjct: 428 ER 429


>gi|302900149|ref|XP_003048204.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729136|gb|EEU42491.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 487

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 51  FENFALKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    GV V V  GG  +  +   L
Sbjct: 111 INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIIRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 165 QDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 225 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 284 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 344 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 403

Query: 362 EANVSVVWEPA 372
           +    +   PA
Sbjct: 404 DLGTEIQPIPA 414


>gi|115910860|ref|XP_001177628.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68
           [Strongylocentrotus purpuratus]
 gi|115968720|ref|XP_001178951.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
          Length = 600

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 186/386 (48%), Gaps = 11/386 (2%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE    + P  +   LS+ G+ + T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 108 VFEFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPS 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA QV +        + +      GG    ++ 
Sbjct: 168 IVHINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     VVLDEAD MLD+GF   I  I++    
Sbjct: 228 RDLERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA----LSDRDNA 234
            R++ M+SAT    +  LA+++ +D + VNI S     +    + + V        +   
Sbjct: 288 DRQVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQ 347

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        +VFC T+       + +    +  + L G+ SQ ER   L   RDGR
Sbjct: 348 LLEEIMQEKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGR 407

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + +ATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +     +N  +
Sbjct: 408 APILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMK 467

Query: 355 RAERL---FREANVSVVWEPAPSVEA 377
           +A  L    +EA   +  +     E 
Sbjct: 468 QAADLINVLQEAKQVINPKLISLAEE 493


>gi|22331253|ref|NP_188872.2| PMH2 (putative mitochondrial RNA helicase 2); ATP binding /
           ATP-dependent helicase/ helicase/ nucleic acid binding
           [Arabidopsis thaliana]
 gi|75335516|sp|Q9LUW5|RH53_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|9293867|dbj|BAB01770.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|17064852|gb|AAL32580.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20259816|gb|AAM13255.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|332643101|gb|AEE76622.1| DEAD-box ATP-dependent RNA helicase 53 [Arabidopsis thaliana]
          Length = 616

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +ALS +G   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 170

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PL L +APTRELA QV +E          +     GG  + ++ R L  G  
Sbjct: 171 AKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDYGVD 228

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+KR+ +MFS
Sbjct: 229 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 288

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I +L K Y  + + V+    + +        Y  +  +          +  +  
Sbjct: 289 ATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAK 348

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   + +ATDV
Sbjct: 349 GGKCIVFTQTKR-DADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + RE 
Sbjct: 408 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 467

Query: 364 NVSVVWEPAPSVE 376
                  P+ +VE
Sbjct: 468 GSRFTELPSIAVE 480


>gi|114561648|ref|YP_749161.1| ATP-dependent RNA helicase RhlB [Shewanella frigidimarina NCIMB
           400]
 gi|122300890|sp|Q088J2|RHLB_SHEFN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|114332941|gb|ABI70323.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 434

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 201/372 (54%), Gaps = 5/372 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P    I  AL+E G+   T +Q   L   L  KD+   AQTG+GKT+AF +A  
Sbjct: 9   KKFADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATF 68

Query: 60  STLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           + LL         A+ P A+ +APTRELA+Q+ ++ + L A TG+ V +  GG S   +R
Sbjct: 69  NHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQR 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I++GT GR+ D++R   +++SH++AVVLDEAD M DLGF  DI F+    P 
Sbjct: 129 AVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMPD 188

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R  ++FSAT+S  +  LA ++  D  +V I    +   +I       ++ D+   ++
Sbjct: 189 AKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKMRLLL 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +++       AIVF +T+ S  +    L     +V  L+G++ Q++R   L+    G   
Sbjct: 249 SLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGHRVGLLTGDVPQKKRIRILEQFTSGEID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+S+    +      
Sbjct: 309 VLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +    N S+ 
Sbjct: 369 PEIETYINHSIP 380


>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 496

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 194/367 (52%), Gaps = 13/367 (3%)

Query: 2   KIFENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           + FE+  ++     + +A     Y   T +Q   + P L   D++  AQTGSGKT AF +
Sbjct: 120 ESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAI 179

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L  + + +       A  +APTRELA Q+    + L +  GV     +GG+++  
Sbjct: 180 PILNRLWHDQEPY------YACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMD 233

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RDL    HI++ TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL  
Sbjct: 234 QARDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKI 293

Query: 176 SPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            P + R    FSAT++  I  L +    + V+  ++++ +    +    ++V    ++  
Sbjct: 294 IPTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTY 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  I+F  T+A+  R + +     F   AL G+L+Q +R  AL + + G+
Sbjct: 354 LIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGK 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +++V++ ++  + ++ +HR GRT RAGR G S+ ++ Q    
Sbjct: 414 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLE 473

Query: 355 RAERLFR 361
              R+  
Sbjct: 474 LILRIEE 480


>gi|308803500|ref|XP_003079063.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
 gi|116057517|emb|CAL51944.1| putative DEAD-box RNA helicase DEAD3 (ISS) [Ostreococcus tauri]
          Length = 492

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 185/374 (49%), Gaps = 11/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++   + + +    +   T VQ+  +   L+ +D++  AQTGSGKT AF   + + +L  
Sbjct: 4   DLGAAVNKNVQRCKFKKPTPVQKYAIPSALQGRDLMACAQTGSGKTAAFCFPIIAGILKK 63

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +    +  + PLAL ++PTRELA Q+  E      +TGV   V  GG     + R ++
Sbjct: 64  GLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAME 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----EFILDSSPK 178
            G  +++ TPGRL D I    +++S    + LDEAD MLD+GF   I    E        
Sbjct: 124 RGCDLLIATPGRLIDLIDRAKISLSRCVYLALDEADRMLDMGFEPQIRQIVEQRDMPPCG 183

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  +A ++  D + + +      H+ I      V      + ++  
Sbjct: 184 ERQTMLFSATFPREIQRMAADFLDDYIFLTVGRVGSSHALITQSVERVNSYHEKSEMLLD 243

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        +VF  T+    +    L  +     ++ G+ +QQER  AL+  R G+  + 
Sbjct: 244 LVEAVPGLTLVFVETKRGADQLEDFLFTNGKPATSIHGDRTQQEREAALKSFRSGKTPIL 303

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQR 354
           +ATDVAARG+D+P +  VI+ +L S+ ++  HR GRTGRAG+KG +  +  ++    + R
Sbjct: 304 VATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDGQIAR 363

Query: 355 RAERLFREANVSVV 368
               L  EAN  V 
Sbjct: 364 SLVDLMSEANQEVP 377


>gi|84387538|ref|ZP_00990556.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
 gi|84377586|gb|EAP94451.1| ATP-dependent RNA helicase RhlE [Vibrio splendidus 12B01]
          Length = 531

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 213/464 (45%), Gaps = 2/464 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ 
Sbjct: 66  GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++     V    +   +  +++ +  + 
Sbjct: 186 ATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKDNDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++ +  L E       + G  SQ  R+ AL+  + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +          + +    R+   P+     +   +        ++      AG  + H +
Sbjct: 366 LERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKNKRHVS 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           G  +  +  P +          DS +   G        GS++  
Sbjct: 426 GSGSAPKRKPNANKPNSGNNGSDSNSTVAGDDKSLRNNGSNYKR 469


>gi|331224537|ref|XP_003324940.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309303930|gb|EFP80521.1| ATP-dependent rRNA helicase RRP3 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 521

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 197/374 (52%), Gaps = 11/374 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K FE +   P+ + EA     Y   T +Q   +   L ++D++  AQTGSGKT AF L +
Sbjct: 75  KTFEELGLIPE-LCEACRTLNYKRPTPIQAESIPYALEDRDIIGLAQTGSGKTAAFALPV 133

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L  +   F          +APTRELA Q+ ++ + L +  GV  AV +GG+ +  + 
Sbjct: 134 LQSLWNDPKPF------FCCVLAPTRELAYQISQQFDALGSTIGVKTAVIVGGIDMMSQA 187

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HI+V TPGRL DH+      ++ +LK +++DEAD +LD+ F   I+ IL   P
Sbjct: 188 IALSKRPHIIVATPGRLHDHLENTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILKVIP 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++RR  +FSAT++  +  L +      V+V ++++      +    +     ++D  +V 
Sbjct: 248 RERRTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLVQLYMFFPFKNKDAYLVY 307

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     K+ I+F  T    +R + +L    F  + L G+LSQ  R ++L   + G   +
Sbjct: 308 LVNELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLNQFKSGNRSI 367

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P ++ VI+ +L +N ++ +HR GRT RAGR G +V ++ Q      +
Sbjct: 368 LVATDVASRGLDIPTVDCVINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQ 427

Query: 358 RLFREANVSVVWEP 371
           R+       +   P
Sbjct: 428 RIEGVIGKKMEEFP 441


>gi|154308886|ref|XP_001553778.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
 gi|160385734|sp|A6S4N4|FAL1_BOTFB RecName: Full=ATP-dependent RNA helicase fal1
 gi|150852597|gb|EDN27789.1| eukaryotic initiation factor 4A-12 [Botryotinia fuckeliana B05.10]
          Length = 399

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFQDMHLKENLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHIVSGTPGRVADMIRRRNLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|326430178|gb|EGD75748.1| eIF-4a [Salpingoeca sp. ATCC 50818]
          Length = 409

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 9/374 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +   +   +   G+   +++Q+  + P  + +DV+  AQ+G+GKT  F +++
Sbjct: 35  VDNFDDMGLKAELLRGIYSYGFERPSAIQQRAIVPCTKGRDVIAQAQSGTGKTATFSVSV 94

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL +APTRELA Q    LE L     V    CIGG  V  + 
Sbjct: 95  LQRIDTTRPE------CQALILAPTRELATQSLDVLENLGQYMDVKTMGCIGGTRVQDDM 148

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++VGTPGR+   I    L++S+L   VLDEADEML  GF D I  I  + PK
Sbjct: 149 AKLEQGVQVIVGTPGRVFHMINSGALDVSNLGVFVLDEADEMLSFGFTDQIYDIFQTLPK 208

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++++ SAT+   +  + K + +D +R+ +  E      I      +     +   + +
Sbjct: 209 DVQVILISATMPDDVLEVTKRFMRDPIRILVKKEQLTLEGIRQFYVDVGKEDWKLETLSD 268

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +      A++FC+TR  V   T+ L     QV    G+++Q ER+  ++  R G  RV
Sbjct: 269 IWKTITISQAVIFCNTRRKVDWLTEQLRARGHQVSCTHGDMTQDERNMIMKEFRAGSTRV 328

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L SN EN LHR GR+GR GRKG+++  + ++  RR +
Sbjct: 329 LITTDLLARGIDVQQVSLVINFDLPSNRENYLHRIGRSGRFGRKGVAINFVAEDDVRRLK 388

Query: 358 RLFREANVSVVWEP 371
            L       +   P
Sbjct: 389 ELEEFYQTQIDEMP 402


>gi|262172952|ref|ZP_06040629.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
 gi|261890310|gb|EEY36297.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus MB-451]
          Length = 464

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PRV-RANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 410

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 180/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   + +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IKNFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RVLILTPTRELAMQVADQARALAKNTNLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILAKTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  K+   ++     R+   I              A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLKEPAEIDAEPSRRERKKIAQWYHRADDMAHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L +       + GE+ Q  R+NA+   RDG   V
Sbjct: 240 TIINDQAERSIVFLKTRERLAELRVELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQTMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEEIKE 371


>gi|258620096|ref|ZP_05715135.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258587454|gb|EEW12164.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 464

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/355 (33%), Positives = 184/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA Q+   +        +  AV  GGV ++ + + +  GA 
Sbjct: 67  PRV-RANQVRALILTPTRELAAQIQDNVLIYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLVKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|242024557|ref|XP_002432694.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212518164|gb|EEB19956.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 407

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  
Sbjct: 35  TFDRMGLREELLRGIYAYGFEKPSAIQQRSIKPIVKGRDVIAQAQSGTGKTATFSISIIQ 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L       +       L ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 95  SLD------TTVRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRK 148

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H++ GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 149 LDYGQHVISGTPGRVFDMIRRRVLRTRFIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 208

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 209 QVVLISATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 268

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V  + G++ Q+ER   ++  R G +RV I
Sbjct: 269 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSCMHGDMPQKERDAIMKEFRTGLSRVLI 328

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 329 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 388

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 389 EQYYSTQIDEMPMNVADLI 407


>gi|156554534|ref|XP_001605420.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 775

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 190/379 (50%), Gaps = 10/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + E + ++G++  T++Q       L  +D++  AQTGSGKT+A+ L  
Sbjct: 110 IQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILP- 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A+  +    R S    P+ L +APTRELA Q+        + + +      GG     + 
Sbjct: 169 ATVHINNQPRLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQA 228

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 229 RDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 288

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R++LM+SAT    +  LA+++  D +++NI S     N     I          ++   
Sbjct: 289 DRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLNLAANHNIRQIIEICQEHEKENKLAV 348

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   TK +  + +  +A+ G+ SQ ER   L   R+G+
Sbjct: 349 LLREIGCERGNKTIIFVETKKKVDDITKAIKRNGWPAIAIHGDKSQPERDYVLSEFRNGK 408

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ V++ +  ++ E+ +HR GRTGR    G +      N  R
Sbjct: 409 TAILVATDVAARGLDVEDVKYVVNFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNAR 468

Query: 355 RAERL---FREANVSVVWE 370
           +A+ L     EA   +  +
Sbjct: 469 QAKELISVLEEAGQIINPQ 487


>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
 gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
          Length = 444

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/399 (28%), Positives = 188/399 (47%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +V  +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLVRFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|73540622|ref|YP_295142.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72118035|gb|AAZ60298.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 632

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/391 (36%), Positives = 205/391 (52%), Gaps = 17/391 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  ALSE  Y N T VQ   +   L  +D+LVS+QTGSGKT AF L     +    
Sbjct: 58  LDAAILRALSELNYNNPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKP 117

Query: 63  ----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIG 110
                       +  R  P+ A P  L + PTRELA+QV             +  A  +G
Sbjct: 118 ATNRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRNLRRIVCASILG 177

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+   ++   L     I+V TPGRL DHI    +++S L  +V DEAD MLD+GF DDI+
Sbjct: 178 GMPYPKQLAALSKMPDILVATPGRLLDHISAGRIDLSALDMLVFDEADRMLDMGFADDID 237

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALS 229
            I+D++P  R+ LMFSAT+   I  LA    KD  R+ IA+     S I+ R      +S
Sbjct: 238 AIVDATPASRQTLMFSATLDARIAQLASRQLKDPQRIEIAAARADQSHIEQRLHFTDDMS 297

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  
Sbjct: 298 HKERLLDHLLRDATLKQAIVFTATKRDADSLAERLSDTGFAAGALHGDMTQGARNRTLTA 357

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++ 
Sbjct: 358 LRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVN 417

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            N   + +R+ R  N  +       +E  R 
Sbjct: 418 HNDTFQWKRIERFTNNRIDASVIEGLEPRRS 448


>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 426

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/399 (31%), Positives = 207/399 (51%), Gaps = 18/399 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + +   L ++G    T VQE  + P    +DV+  AQTG+GKT+A+ L L
Sbjct: 1   MTHFDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +        A  AL IAPTRELA+Q+ R  E L    G+   V  GG  + R++
Sbjct: 61  LARIKPQGA------AAQALVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +V+GTPGRL DH+R   L +  +  VVLDEADEML +GF +D+E +L ++ +
Sbjct: 115 EKLRRSPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKMGFIEDVETLLGAAAQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L K +  +   + +A E    + I+   + V+  D+ + +   
Sbjct: 175 DYQLALFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCAS 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC+T+         LA+  + V ALSG+L+Q +RS  L+  R  + ++ 
Sbjct: 235 INEEAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  +
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRK 354

Query: 359 LFREAN-------VSVVWEPAPSVEAIRERDAQRILQDP 390
           +            V     PAP      E DAQ+    P
Sbjct: 355 MEAALKACLRRDVVKKKKRPAPPA---GEGDAQKKAHPP 390


>gi|226531524|ref|NP_001148960.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195623636|gb|ACG33648.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 145 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 204

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 205 IDQEK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 258

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +++DEAD++L   F+  IE ++   P  R+
Sbjct: 259 YQPVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQ 318

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 319 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 377

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 378 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 437

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 438 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 497

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 498 ELGTEIKPIPPQIDQAI 514


>gi|195614632|gb|ACG29146.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 517

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 145 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 204

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 205 IDQEK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 258

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +++DEAD++L   F+  IE ++   P  R+
Sbjct: 259 YQPVHLIVGTPGRILDLTKKGVCILKDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQ 318

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 319 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 377

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 378 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 437

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 438 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 497

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 498 ELGTEIKPIPPQIDQAI 514


>gi|195051805|ref|XP_001993174.1| GH13670 [Drosophila grimshawi]
 gi|193900233|gb|EDV99099.1| GH13670 [Drosophila grimshawi]
          Length = 518

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 213/397 (53%), Gaps = 9/397 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 64  LSETLCKACDELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 123

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 124 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVIVGGMDMVAQGLQLAKKPH 177

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 178 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 237

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 238 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYLFIPVKYKDVYLVHILNELAGN 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 298 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+ +    
Sbjct: 358 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITIVSQYDIELYQRIEQLLGK 417

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +         V A++ER A+      L    ++  +
Sbjct: 418 QLPLYKCEEDEVMALQERVAEAQRTAKLEFKDLEDSK 454


>gi|62898149|dbj|BAD97014.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 variant [Homo sapiens]
          Length = 483

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 121/478 (25%), Positives = 199/478 (41%), Gaps = 23/478 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPVILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +       +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL----LAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++      L   D
Sbjct: 363 IEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           P+  A   A   +I +      E++          R     R  +   GS      S 
Sbjct: 423 PDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQ 480


>gi|31542656|ref|NP_061943.2| probable ATP-dependent RNA helicase DDX49 [Homo sapiens]
 gi|114676212|ref|XP_512518.2| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Pan
           troglodytes]
 gi|74753527|sp|Q9Y6V7|DDX49_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|2443870|gb|AAB81544.1| R27090_2 [Homo sapiens]
 gi|12803677|gb|AAH02674.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Homo sapiens]
 gi|119605165|gb|EAW84759.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, isoform CRA_b [Homo
           sapiens]
 gi|312152524|gb|ADQ32774.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [synthetic construct]
          Length = 483

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 121/478 (25%), Positives = 199/478 (41%), Gaps = 23/478 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +       +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL----LAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++      L   D
Sbjct: 363 IEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           P+  A   A   +I +      E++          R     R  +   GS      S 
Sbjct: 423 PDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQ 480


>gi|71749190|ref|XP_827934.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70833318|gb|EAN78822.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 660

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 188/387 (48%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+  V+ E +   GY   T VQ   +   L  +D++  AQTGSGKT ++ +   + +L  
Sbjct: 163 NMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAINEILLN 222

Query: 64  -AENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    +SP S  +P AL +APTREL++Q+  E       T V   V  GG     +  +
Sbjct: 223 ISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHE 282

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++V TPGRL D      +  S ++ ++LDEAD MLD+GF   I  I+       
Sbjct: 283 LSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDM 342

Query: 181 RMLM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                     +SAT    I  LA+ +      + +        +I      +   D+  A
Sbjct: 343 PRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQA 402

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +LR +  K  +VF   +       + L       V++ G+  Q+ER  AL++ + G 
Sbjct: 403 LLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGA 462

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +V +ATDVA+RG+D+P++ +VI  ++ SN ++ +HR GRTGRAG+ G+++    +  + 
Sbjct: 463 CQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRN 522

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
             + L    N       +P V A+ +R
Sbjct: 523 IVDDLIPLLN-ETNQVISPEVRALAKR 548


>gi|195118551|ref|XP_002003800.1| GI21075 [Drosophila mojavensis]
 gi|193914375|gb|EDW13242.1| GI21075 [Drosophila mojavensis]
          Length = 515

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 214/397 (53%), Gaps = 9/397 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q+  +   L+ KD++  A+TGSGKT AF L +   LL   
Sbjct: 66  LNETLCKACEELKWKAPSKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILHALLENP 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 126 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 179

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 180 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 239

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 240 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGN 299

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 300 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 359

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+ +    
Sbjct: 360 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLLGK 419

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +         V A++ER A+      L L  ++  +
Sbjct: 420 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDSK 456


>gi|167950812|ref|ZP_02537886.1| DEAD/DEAH box helicase domain protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 415

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 195/376 (51%), Gaps = 3/376 (0%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  A+SE+GY   T VQ+  +   L  +DV+  AQTG+GKT  F      
Sbjct: 2   SFEKLGLSGPILRAVSEQGYTQTTPVQQQAIPVILSGRDVMAGAQTGTGKTAGFT-LPLL 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL E+ +        AL + P RELA QVG  +E       +   V  GGV ++ +   
Sbjct: 61  ELLEEHAQGKGRRPVRALVLTPNRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I+V TPGRL DH+  K L++SH++ +VLDEAD MLD+GF  DI  +L   P +R
Sbjct: 121 LRHGVDILVATPGRLLDHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPHER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA +      ++ +A  N     +      V  + +   + +++ 
Sbjct: 181 QNLLFSATYSQEIKRLASDLLNQPEQIEVARRNTAAELVSQVVYPVDKARKRELLSHMIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  +VF  T+   +R  + L +      A+ G  SQ  R+ AL   + G  RV +A
Sbjct: 241 ANNWRQVLVFTRTKHGANRLAQQLEKDGLSAAAIHGNKSQGARTRALANFKSGEVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG +G +V ++  +  +    + 
Sbjct: 301 TDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGEAVSLVCIDEHKLLRDIE 360

Query: 361 REANVSVVWEPAPSVE 376
           R     +  +  P  E
Sbjct: 361 RLLKRKITEKVLPGYE 376


>gi|255575815|ref|XP_002528806.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531759|gb|EEF33579.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 500

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 197/396 (49%), Gaps = 15/396 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L ++G V  T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 54  IKNFKSMRFPEPILKKLKDKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPM 113

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E      +P   P  L I P+RELA Q    +E             +   +CIG
Sbjct: 114 IMVALQEEIMMPIAPGEGPFGLIICPSRELARQTYEVVEQFLIPMKEAGYPELRPLLCIG 173

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI 
Sbjct: 174 GVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 233

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 234 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 293

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 294 KIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 352

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 353 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 412

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERD 382
           N         + L +EA   +    A   + + + D
Sbjct: 413 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDGD 448


>gi|330719991|gb|EGG98438.1| ATP-dependent RNA helicase SrmB [gamma proteobacterium IMCC2047]
          Length = 448

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 192/371 (51%), Gaps = 5/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL ++G+   T VQE  +   L  KD+LVSA+TGSGKT AF L + + LLA +
Sbjct: 11  LNERLIKALEKQGFEQPTPVQEQSIPAALAGKDLLVSAETGSGKTAAFLLPILNKLLAND 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P +   AL + PTRELA QV +  E L + + +   + IG  +   ++   +    
Sbjct: 71  ---APNTGTRALVLVPTRELARQVLKNCEALASFSHLKAGLIIGRENFQIQKALFRKNPE 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL +H+     +   L+ +VLDEAD MLD+GF +D+  I  +  K+R+ L++S
Sbjct: 128 ILIATPGRLVEHLDQNTPDFKDLEVLVLDEADRMLDMGFGEDVLKITHACNKERQTLLYS 187

Query: 187 ATISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT++               +     +  ++  S      +      ++  ++ +L     
Sbjct: 188 ATLNQKGLKPMIEKVLTDPQKLLLNSVRDQHQSIRQQIILADDTGHKERLLLALLTREKY 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F +TRA      ++L +   +   L GE+ Q+ R+  ++ +R G     +A+DVA
Sbjct: 248 EKALIFTNTRAKADVLGEMLFKSEVRSGVLHGEMEQEHRNRVVERLRTGHISALVASDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++LVI+ +++ + ++ LHR GRTGRAG  G++V +I          + R   
Sbjct: 308 ARGLDIKGIDLVINFDMARSGDDYLHRIGRTGRAGETGLAVSLIIDPEWNLMAGIERYLG 367

Query: 365 VSVVWEPAPSV 375
                     +
Sbjct: 368 QKFERRVIEGL 378


>gi|115456051|ref|NP_001051626.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|75326432|sp|Q75HJ0|RH37_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 37; AltName:
           Full=OsPL10a
 gi|41469394|gb|AAS07217.1| putative helicase [Oryza sativa Japonica Group]
 gi|108711635|gb|ABF99430.1| ATP-dependent RNA helicase An3, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113550097|dbj|BAF13540.1| Os03g0805200 [Oryza sativa Japonica Group]
 gi|222626000|gb|EEE60132.1| hypothetical protein OsJ_13017 [Oryza sativa Japonica Group]
          Length = 637

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 199/389 (51%), Gaps = 20/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    YV  T VQ   +   +  +D++  AQTGSGKT AF   +
Sbjct: 173 VNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPI 232

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  +
Sbjct: 233 ISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPI 292

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H++ R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I++
Sbjct: 293 HQQLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDEADRMLDMGFEPQIRKIVE 352

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  +A ++  D + + +         I  R   V  +D
Sbjct: 353 QMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEAD 412

Query: 231 RDNAIVNILRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L    A          +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 413 KRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTNGFPATSIHGDRTQQER 472

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 473 EYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGL 532

Query: 344 SVFVIPQ---NMQRRAERLFREANVSVVW 369
           +     +   ++ R    L +EAN  V  
Sbjct: 533 ATAFFNEGNLSLARPLCELMQEANQEVPQ 561


>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
          Length = 545

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 223/480 (46%), Gaps = 22/480 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +       +A+++ GY   T +QE  +   L  +DVL  AQTG+GKT AF L L
Sbjct: 1   MTEFSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L +   R   A  P A+ +APTRELA QV          T +   + IGGVS+  + 
Sbjct: 61  VERLASGRAR---ARMPRAIVLAPTRELADQVAESFAKYAKGTKLTWVLLIGGVSMGDQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AALNKGVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRMLDMGFIPDIERIFKLTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAI 235
           +R+ L FSAT+ P IT L   + KD  R+  +        I    V +       +  A+
Sbjct: 178 RRQTLFFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIVRIPTSDPKAKRAAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++     +N IVFC+ ++ V    K L  H F   A+ G+L Q  R+  L   R G  
Sbjct: 238 RALMSRTDVRNGIVFCNRKSEVDIVAKSLKTHGFDAAAIHGDLDQSHRTKTLADFRSGAL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++S + ++ +HR GRTGRAG+ G +  ++     + 
Sbjct: 298 KILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKS 357

Query: 356 AERLFREANVSVVWEPAPSV--EAIRE--RDAQRILQDPLFLDSIQGDEK---KMVDVLL 408
            +++ +   +         +  +AI++  RD +R  +        +G  +          
Sbjct: 358 LDKVLKLIKMDPQELVLDDIDFDAIKDGGRDDKRSSRSNETRSGGRGRSRAAEPAQAPAP 417

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEI-------TPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           A    E  AA      R+   A  E+         ++ V  +   R  SRA         
Sbjct: 418 AVALAETDAAEAPTRSRSRRKAKPEVSVETVVEPEMAPVVEKPAGRGRSRARSEPRPEAK 477


>gi|59713337|ref|YP_206112.1| ATP-dependent RNA helicase DbpA [Vibrio fischeri ES114]
 gi|59481585|gb|AAW87224.1| ATP-dependent RNA helicase, specific for 23S rRNA [Vibrio fischeri
           ES114]
          Length = 462

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 204/376 (54%), Gaps = 7/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L   GY  +T +Q   L   L+ KDV+   +TGSGKT AFGL L + L  +
Sbjct: 10  DLHPSLLQNLETLGYNEMTPIQAQSLPFMLKGKDVIAQGKTGSGKTAAFGLGLLANLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GGV    +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAKEIRKLARAIHNIKVLTLCGGVPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+
Sbjct: 124 AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDAVLDHAPVKRQNLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A     D +           S   +   +    DR  A+  +L  H  
Sbjct: 184 FSATFPPQIKSIADRIMNDPIMTKAEETVENTSINQHFFKVGDFEDRLEALQILLLKHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L  + F V AL G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESTVIFCNTKRVTQEVADELRHYDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ V++ ELS +PE  +HR GRTGRAG KG+++ +  +       ++    N
Sbjct: 304 ARGLDIESLDAVVNFELSRDPEVHVHRIGRTGRAGNKGIALSLFNEKEMHNIAQIEEYMN 363

Query: 365 VSVVWEPAPSVEAIRE 380
           + +  E  PS + ++E
Sbjct: 364 IDIRDEALPSTDYLKE 379



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 3/99 (3%)

Query: 447 RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
           RD++            +       +  G K K     ++  L    GI  + +G I V  
Sbjct: 367 RDEALPSTDYLKEPAYYAEMVTLWIDGGKKNKLRPGDILGALTGKDGIEGKMVGKINVFD 426

Query: 507 DLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
              +V V         + ++  K   +K         RG
Sbjct: 427 FHAYVAVHNTVAKAALKKLESGK---MKGRSFRVSRMRG 462


>gi|326499824|dbj|BAJ90747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 518

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 146 FEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 205

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 206 IDQDR------NAIQVVIVVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 259

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 260 YQPVHLLVGTPGRILDLTKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIRYLPASRQ 319

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 320 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 378

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 379 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 438

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 439 DLFTRGIDIQAVNVVINFDFPKSSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 498

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 499 ELGTEIKPIPPQIDQAI 515


>gi|291276231|gb|ADD91316.1| vasa [Seriola quinqueradiata]
          Length = 650

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 191/385 (49%), Gaps = 13/385 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 214 IMTFAEAALCESLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 273

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     +FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 274 LQQLMADGVAASQFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 333

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R++  G +++ GT GRL D I    + +  L+ +VLDEAD MLD+GF  D+      
Sbjct: 334 HQIREICRGCNVLCGTLGRLLDVIGRGKVGLHKLRYLVLDEADRMLDMGFEPDMRRLVGS 393

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  K++ ++  +          A   + D + + +       SD++ + + V    
Sbjct: 394 PGMPSKEKRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQKFIEVTKFS 453

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +++IL+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 454 KREQLLDILKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADF 513

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R GR  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V    P
Sbjct: 514 RSGRCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 573

Query: 350 QNMQRRAERLFREANVSVVWEPAPS 374
            N  + A  L   + +S   +  PS
Sbjct: 574 DNDGQLAGSLV--SILSKAQQEVPS 596


>gi|20806137|ref|NP_620798.1| probable ATP-dependent RNA helicase DDX46 [Rattus norvegicus]
 gi|81890303|sp|Q62780|DDX46_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46; AltName: Full=Helicase of
           117.4 kDa
 gi|897915|gb|AAC52210.1| RNA helicase [Rattus norvegicus]
 gi|78174325|gb|AAI07591.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 1032

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/560 (22%), Positives = 250/560 (44%), Gaps = 27/560 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSAPAPTAGNAEKLEIAKRLALRIN 860

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +    +    + P ++   ++    + +   +    L+K
Sbjct: 861 AQKNLGIESQVDVMQQATNAILRGGPL----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 916

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 917 QEEERQEGGQSESFKRYEEE 936


>gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 439

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 187/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|60501849|gb|AAX22124.1| DEAD-box RNA-dependent helicase p68 [Carassius auratus]
          Length = 611

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 185/384 (48%), Gaps = 9/384 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N P  + + + ++ + + T +Q       L  KD++  AQTGSGKT+++ L   
Sbjct: 96  VKFHEANFPNYVMDVIGKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +        + +      GG     + R
Sbjct: 156 VHINHQ-PFLERGEGPICLVLAPTRELAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIR 214

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  ILD     
Sbjct: 215 DLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKILDQIRPD 274

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAI 235
           R+ LM+SAT    +  LA+++ KD V++N      S N     I          D+   +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKDYVQINVGALQLSANHNILQIVDVCNDGEKEDKLMRL 334

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRSMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKA 394

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +      N  ++
Sbjct: 395 PILIATDVASRGLDVEDIKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454

Query: 356 AERL---FREANVSVVWEPAPSVE 376
           A  L    REAN ++  +     E
Sbjct: 455 AHDLVSVLREANQAINPKLIQMAE 478


>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
 gi|74660195|sp|Q6CH58|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica]
          Length = 480

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 209/421 (49%), Gaps = 13/421 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     I E   E  +   T +Q   +   L  +D++  AQTGSGKT AF + + 
Sbjct: 64  KTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVL 123

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +L               + +APTRELA Q+    E L +  G+  AV +GG+++  +  
Sbjct: 124 QSLYENPQP------LYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAV 177

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 178 ALSKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPR 237

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   +FSAT++  +  L +    D VRV ++++ +   ++    V      +D  +V +
Sbjct: 238 QRNTYLFSATMTSKVEKLQRASLVDPVRVAVSTKYQTADNLLQYMVFCPFKHKDTHLVYL 297

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +   + I+F  T++   R + +L    +  + L G+LSQ  R  AL   + G   + 
Sbjct: 298 VSENAGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLSQTARLGALNKFKSGSRNIL 357

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P ++LVI+ ++ S+ ++ +HR GRT RAGR G SV ++ Q       R
Sbjct: 358 IATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAGRAGKSVALVSQYDLELYLR 417

Query: 359 LFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +       +   P  S EA+    ER A+        +    G +K+       + D   
Sbjct: 418 IEGALGKKLDSYPLES-EAVMLFSERVAEASRAAIQEMKGEDGTKKRSKFDKKRRRDEMD 476

Query: 416 I 416
           I
Sbjct: 477 I 477


>gi|326426645|gb|EGD72215.1| DEAD box ATP-dependent RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1054

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 196/381 (51%), Gaps = 6/381 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + + L    Y + T +Q   L   +  +D+L  A+TGSGKT+AF L +   +L 
Sbjct: 319 SGLPRRVLDVLRALKYDDPTPIQAQALPVIMSGRDMLGIAKTGSGKTLAFLLPMLRHVLD 378

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  R       +AL ++PTRELAVQ   E +       + +A   GG  +  +   L+  
Sbjct: 379 QR-RVRQGEGCIALILSPTRELAVQTYTEAKKFTKHLDLRIACVYGGSDIADQIAHLKRS 437

Query: 125 AHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             I+V TPGR+ D     RGK  N   +  VVLDEAD M D+GF   +  ILD+    R+
Sbjct: 438 VEIIVCTPGRMIDMLTVNRGKVTNPRRITYVVLDEADRMFDMGFEPQVMRILDNIRPDRQ 497

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LR 240
            +MFSAT   A+  LA+   K  + + +   +     ++   +++   ++ N ++ +   
Sbjct: 498 TVMFSATFPRAMEVLARKILKKPIEIQVGGRSIVSDTVEQHVLVLEEQNKFNKLLELLGI 557

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y+   + IVF   +         L  H +  + L G +SQ++R + ++  + G  ++ IA
Sbjct: 558 YYVQGSVIVFVHRQEKADMLLTNLMGHGYMSLPLHGAVSQEDRQSNIRDFKLGNVKILIA 617

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T VAARG+D+  L+LV++ +  ++ E+ +HR GRTGRAG KG +   + ++ ++ A  + 
Sbjct: 618 TSVAARGLDVKSLKLVVNYDCPNHYEDYVHRCGRTGRAGNKGTAFTFVTKDDKQLAGHVI 677

Query: 361 REANVSVVWEPAPSVEAIRER 381
           +   +S    PA  ++A+ E 
Sbjct: 678 KALELSSQEVPA-DLKAVWEE 697


>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 445

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 123/399 (30%), Positives = 200/399 (50%), Gaps = 9/399 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++   +    A+++ GY   T VQE  +   L  +DV+ +A TG+GKT AF L + 
Sbjct: 35  STFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVI 94

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    DR     +P AL ++PTRELA+Q+      L   +G+ V   +GGV    +  
Sbjct: 95  ERI----DRAKKPGSPRALVVSPTRELALQIDAACTQLAKGSGLRVVTVVGGVPYKGQLS 150

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D +    + +  ++ +VLDEAD MLD+GF   ++ I+ ++P  
Sbjct: 151 KLSRGVDILVATPGRLHDLMERGDVKLRDVEILVLDEADRMLDMGFWPTMKKIVAATPSS 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+   +        +D   V +A +      I+   V V    + + +  +L
Sbjct: 211 RQTLLFSATLDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGSMQKASLLRLLL 270

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G+K  IVF  T+      T  L    F+  ++  + +Q +R  AL     G   V +
Sbjct: 271 AERGSKRVIVFTDTKTRAEICTGQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLV 330

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARGID+PD+  V++ EL  NP++ +HR GRTGRAG  G S+  +    + +   +
Sbjct: 331 ATDVLARGIDVPDIAYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFVSPEAKAQLLDI 390

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +     +   P  +VE     +A+R L +     + +G
Sbjct: 391 EKLLGSKI---PTLAVEGYDATEAERALANRFVSKTTRG 426


>gi|254469871|ref|ZP_05083276.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
 gi|211961706|gb|EEA96901.1| ATP-dependent RNA helicase [Pseudovibrio sp. JE062]
          Length = 476

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/462 (28%), Positives = 203/462 (43%), Gaps = 10/462 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+   GY   T++Q   +   L  +DVL  AQTG+GKT +F L + + L    
Sbjct: 8   LSEKVLAAVEASGYTEPTAIQAGAIPYVLERRDVLGIAQTGTGKTASFTLPMITLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV            + VA+ IGGVS   + R L+ GA 
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVEDNFNRYGVNHKLNVALLIGGVSFAEQDRKLERGAD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L +  +  +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 125 VLIATPGRLLDHFERGKLLLQGVDILVIDEADRMLDMGFIPDIERICKLIPFTRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRYHG 243
           AT+   I  L   + ++  +V +A  +     +  R           R      I     
Sbjct: 185 ATMPSEIQRLTDTFLQNPAKVEVAKASTTAETVTQRIAAAEPEDYEKRAKLRELIEGAED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAIVFC+ +  V+   + L  H F V AL G++ Q+ R   L   + G  ++ +A+DV
Sbjct: 245 LQNAIVFCNRKRDVATLFRSLVRHEFSVGALHGDMDQRSRMTMLDNFKKGNIKILVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V + +L    E+ +HR GRTGRAGR G ++ ++    ++  + +    
Sbjct: 305 AARGLDIPSVSHVFNFDLPIQAEDYVHRIGRTGRAGRDGTAISIVTGKDEKALQAINETI 364

Query: 364 NVSVVW--EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              + W  EP      + E+ ++R  +            K   +   A           L
Sbjct: 365 GKELEWVGEPVDFSAPVEEKKSRR--RSTRGQKDKNRSRKSKAEAQEAPVQEADSVPAGL 422

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                     E   P     GR   +    A          F
Sbjct: 423 EEQPMVPMHTERRAPARARGGRRANQPKDEAIFRNASHIPAF 464


>gi|148235819|ref|NP_001089455.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Xenopus laevis]
 gi|66910710|gb|AAH97561.1| MGC114699 protein [Xenopus laevis]
          Length = 758

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/448 (25%), Positives = 214/448 (47%), Gaps = 14/448 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S   +   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 187 NLSRPLLKAISAMSFTQPTPIQKACIPVGLLGKDICACAATGTGKTAAFMLPVLERLIYK 246

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +P +    L + PTREL +QV      L   T V   + +GG+ V  +   L++G 
Sbjct: 247 -PREAPVT--RVLVLVPTRELGIQVHAVTRQLAQFTEVTTCLAVGGLDVKTQEAALRSGP 303

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGRL DH+        +    ++LDEAD MLD  F + ++ I+     +R+ L+
Sbjct: 304 DVLIATPGRLIDHLHNCPSFSLNCIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTLL 363

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RY 241
           FSAT+S  +  LA    ++ VR+ + S       +    V +  +   +           
Sbjct: 364 FSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLTR 423

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     QV  L G LSQ +R  AL+  +D +  + +AT
Sbjct: 424 TFQDHVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVAT 483

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    ++ +HR GRT RAG+ G SV ++ +  ++  + + +
Sbjct: 484 DVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVK 543

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +A   V     P  + +  +   +I +    + ++   EK+  ++ +++    +I+    
Sbjct: 544 KAQAPVKARVIP--QDVISKFRDKITKSEKEIYAVMQLEKEEREMQMSE---AQISVAKK 598

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDD 449
           ++ +      E     S    RD  R +
Sbjct: 599 KLQQEK--GGEAQPERSWFQTRDERRKE 624


>gi|312221299|emb|CBY01239.1| hypothetical protein [Leptosphaeria maculans]
          Length = 613

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 225/477 (47%), Gaps = 16/477 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     EA+   G+  +T +Q+  + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 140 NLSDRTMEAIKNMGFETMTEIQQKTIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEML--S 197

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L  K      + IGG +   E   L  G 
Sbjct: 198 AMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLVKGV 257

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH+         +LK++++DEAD +L++GF D++  ++   P  R+ ++
Sbjct: 258 NLLIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDEMRSVIKILPSDRQTML 317

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+   K           ++HS +   +   V+     R   + + L+ 
Sbjct: 318 FSATQTTKVEDLARISLKPGPLYINVDYRKEHSTVEGLEQGYVICDSDTRFRLLFSFLKK 377

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  K  IVF S+  SV  + ++L      V+ L G+L QQ R+N      +  +   I T
Sbjct: 378 HQKKKVIVFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQVRTNRFFEFCNATSGTLICT 437

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P+++ VI  +   +P + +HR GRT R    KG S+  +  +      +L 
Sbjct: 438 DVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSDGKGRSLMFLLPSEIGFL-KLL 496

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V +V    P+ + +  +   + ++    +L+    D  +      A H    +   
Sbjct: 497 KEARVPLVEFELPANKILNIQSQLEALISKNYYLNKSAKDGYRSYLQAYASHSLRSVFDV 556

Query: 417 -AAGFLRIHRA-GLCAPEEITPVSLVS-GRDRFRDDSRAFKVGG-GSRDNFKGSSWF 469
                +++ ++ G   P  I      S GRD+  +  RA+       R   K    F
Sbjct: 557 HKLDLVKVAKSFGFSTPPRIDISLGASLGRDKKAEGRRAYGSQPQQGRRPMKPGKRF 613


>gi|302676323|ref|XP_003027845.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
 gi|300101532|gb|EFI92942.1| hypothetical protein SCHCODRAFT_70659 [Schizophyllum commune H4-8]
          Length = 459

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L+ +D+L  A+ G+GKT AF +     
Sbjct: 42  FENMYLRRELLMGIFEAGFEKPSPIQEEAIPKALQRRDILARAKNGTGKTAAFVIPTLQQ 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    ++        AL + PTRELA+Q  +  + L    G+ V V  GG ++  +   L
Sbjct: 102 VDPTKNKI------QALLLVPTRELALQTSQVCKILGKHMGIQVMVTTGGTTLKDDILRL 155

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   P  R+
Sbjct: 156 NETVHVLVGTPGRILDLAGKNVADLSQCPVFVMDEADKLLSPEFAPVMEQLLSYLPNDRQ 215

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +    + +  +   +N+  E             V    + + +  +   
Sbjct: 216 VMLFSATFPMIVKDFKEKHMNNPYEINLMEELTLRGV-TQYYAYVEERQKVHCLNTLFSK 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G+ R  + +
Sbjct: 275 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGQCRNLVCS 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ ++    +    ++ +
Sbjct: 335 DLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQ 394

Query: 362 EANVSVVWEP 371
           E    ++  P
Sbjct: 395 ELGTEIMPIP 404


>gi|297830946|ref|XP_002883355.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329195|gb|EFH59614.1| hypothetical protein ARALYDRAFT_479746 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 612

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 204/373 (54%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +ALS +G   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 108 ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PL L +APTRELA QV +E          +     GG  + ++ R L  G  
Sbjct: 168 AKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQLDYGVD 225

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+KR+ +MFS
Sbjct: 226 VAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFS 285

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I +L K Y  + + ++    + +        Y  +  +          +  +  
Sbjct: 286 ATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITTYSILADSYGRASIIGPLVTEHAK 345

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   + +ATDV
Sbjct: 346 GGKCIVFTQTKR-DADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 404

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + RE 
Sbjct: 405 AARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREV 464

Query: 364 NVSVVWEPAPSVE 376
                  P+ +VE
Sbjct: 465 GSRFTELPSIAVE 477


>gi|255945213|ref|XP_002563374.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588109|emb|CAP86180.1| Pc20g08510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 525

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 48  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 108 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE ++   PK R+
Sbjct: 162 NDPVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLMSFHPKDRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 222 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 280

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 281 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 340

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQ 400

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 401 ELGTEIQPIP 410


>gi|156043018|ref|XP_001588066.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154695693|gb|EDN95431.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 535

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 167/371 (45%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+    + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFSIKRDLLMGIFESGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +         L + PTRELA+Q  +  + L    GV V V  GG ++  +   L
Sbjct: 109 INPKSSKV------QCLILVPTRELALQTSQVCKTLGQHLGVNVMVTTGGTTLRDDIMRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     ++DEAD++L   F   IE +L   PK R+
Sbjct: 163 AEPVHIIVGTPGRILDLAGKNVADLSECNMFIMDEADKLLSPEFTIVIEQLLQFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +   +     D   +N+  E             V   ++ + +  +   
Sbjct: 223 IMLFSATFPMTVKDFSDKNMADPYEINLMDELTLRGI-TQFYAFVEEKEKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMIQANRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +     + +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLISWEDRFNLYNIEQ 401

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 402 ELGTEIAPIPA 412


>gi|195021550|ref|XP_001985416.1| GH17046 [Drosophila grimshawi]
 gi|193898898|gb|EDV97764.1| GH17046 [Drosophila grimshawi]
          Length = 811

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +++ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + 
Sbjct: 299 FDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQR 358

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ G  
Sbjct: 359 E-LRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCE 417

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 418 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 477

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 478 ATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSE 537

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF + +A     +  L       + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 538 GGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDILVATDVA 597

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  VI+ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 598 ARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 654


>gi|326430346|gb|EGD75916.1| ATP-dependent RNA helicase RhlE [Salpingoeca sp. ATCC 50818]
          Length = 2578

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 192/360 (53%), Gaps = 7/360 (1%)

Query: 5    ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            + + +V+ +A  + GY   T VQEA + P L  KD++  A+TGSGKT AF L +  +L+ 
Sbjct: 2159 QGLEEVLCQACEDVGYRRPTPVQEAAIPPALEGKDIVGIAKTGSGKTAAFALPVMHSLIN 2218

Query: 65   ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               R        AL +APTRELA Q+  E + L A  G+  A+ +GG+S+ +++  L   
Sbjct: 2219 ARPRERRFH---ALVMAPTRELAQQIEGEFKALGATIGLKTALLVGGLSLQQQQDRLSQN 2275

Query: 125  AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             H+++ TPGR+  H+       ++++K ++LDEAD ML   F  +I+ +L   PK+R   
Sbjct: 2276 PHVLIATPGRILHHLERTNGFKLNNVKFLILDEADRMLTPEFEREIDQLLGHIPKRRTNF 2335

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            +FSAT +  +  L     ++ V + I  + +    +D   V + L  ++  +V  L+  G
Sbjct: 2336 LFSATSNDKVKHLMHAVLRNPVHIKIKHKVKTVDTLDQHCVFLPLQFKETYLVWFLQRQG 2395

Query: 244  ---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 + I+FC T+ +  +   +L +   +   L G +SQ++R  AL   +  +  V + 
Sbjct: 2396 LQADSSVIIFCETKRATMKLVLMLRKLGLRATCLHGNMSQEKRIGALARFKTHKDNVLVC 2455

Query: 301  TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
            T+V ARG+D+  +ELVI+ +L    +  LHR GRT RAGR G +V  + Q      + + 
Sbjct: 2456 TNVGARGLDIQGVELVINYDLPKTSDVYLHRVGRTARAGRSGRAVTFVTQYDVPYFKEIE 2515


>gi|238927921|ref|ZP_04659681.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
 gi|238884254|gb|EEQ47892.1| DEAD/DEAH box helicase domain protein [Selenomonas flueggei ATCC
           43531]
          Length = 426

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 205/399 (51%), Gaps = 18/399 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + +   L ++G    T VQE  + P    +DV+  AQTG+GKT+A+ L L
Sbjct: 1   MTHFDQLGISETLTALLQKQGITQPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLAYLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +        A  AL IAPTRELA+Q+      L    G+   V  GG  + R++
Sbjct: 61  LARIKPQGA------AAQALVIAPTRELAIQIEHVAASLAEPLGIGTTVIYGGADIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +V+GTPGRL DH+R   L +  +  VVLDEADEML +GF +D+E +L ++ +
Sbjct: 115 EKLRRSPQLVIGTPGRLLDHVRRGTLALGRVNKVVLDEADEMLKMGFIEDVETLLGAAAQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L K +  +   + +A E    + I+   + V+  D+ + +   
Sbjct: 175 DYQLALFSATMPERIVRLTKRFMTNPAHIRLAGETVTLAAIEQVVIPVSAGDKLDRLCAS 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC+T+         LA+  + V ALSG+L+Q +RS  L+  R  + ++ 
Sbjct: 235 INEEAPYLAMVFCATKERTRALMMELAQRGYLVDALSGDLTQTQRSFVLRQFRSAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  +
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGTQGKAITLVAPHQHEKLRK 354

Query: 359 LFREAN-------VSVVWEPAPSVEAIRERDAQRILQDP 390
           +            V     PAP      E DAQ+    P
Sbjct: 355 MEAALKACLRRDVVKKKKRPAPPA---GEGDAQKKAHPP 390


>gi|189193121|ref|XP_001932899.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978463|gb|EDU45089.1| ATP-dependent RNA helicase HAS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 606

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 226/471 (47%), Gaps = 13/471 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+   G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 133 NLSERTRQAIDGMGFKTMTEIQQKAIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--S 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L         +CIGG +   E   L+ G 
Sbjct: 191 QLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTFGICIGGANRSAEADKLRKGV 250

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH+         +L+++V+DEAD +L++GF D++  I+   P +R+ ++
Sbjct: 251 NLLIATPGRLLDHLHNTQGFVFKNLRSLVIDEADRILEVGFEDEMRSIIKILPTERQTML 310

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241
           FSAT +  +  LA+   K            +HS +       VL     R   + + L+ 
Sbjct: 311 FSATQTTKVEDLARISLKAGPLYINVDHRAEHSTVQGLEQGYVLCDSDTRFRLLFSFLKK 370

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  K  IVF S+ ASV  ++++L      V+ L G+L QQ R+N      + ++   I T
Sbjct: 371 HQKKKVIVFLSSCASVDFYSELLNYIDLPVLGLHGKLKQQARTNRFFEFVNAQSGTLICT 430

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P+++ VI  +   +P + +HR GRT R A  KG S+  +  +      +L 
Sbjct: 431 DVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLLPSEVGFL-KLL 489

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +E+ V +V    P+ + +  +   + ++    +L+    D  +      A H    +   
Sbjct: 490 KESRVPLVEFELPANKILNIQSQLEALISKNYYLNKSAKDGYRSYLQSYASHSLRSVFDV 549

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                +++ ++   +      ++L +G  R +        G   +   +  
Sbjct: 550 NKLDLVKVAKSFGFSTPPRIDITLGAGLSRDKKVEGRRAYGSQPQQGRRPM 600


>gi|114643643|ref|XP_001153944.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
          Length = 443

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 121/414 (29%), Positives = 211/414 (50%), Gaps = 14/414 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL    R
Sbjct: 21  DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR 80

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    HI+
Sbjct: 81  ------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII 134

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +FSA
Sbjct: 135 IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 194

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      + 
Sbjct: 195 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSF 254

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+RG
Sbjct: 255 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 314

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+       +
Sbjct: 315 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 374

Query: 368 VWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
              P    E +    R  +AQR  +  L      G++KK        +D  + A
Sbjct: 375 PGFPTQDDEVMMLTERVAEAQRFARMELREH---GEKKKRSREDAGDNDDTEGA 425


>gi|15233064|ref|NP_191683.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|42572753|ref|NP_974472.1| DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana]
 gi|75335832|sp|Q9M2E0|RH12_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|6850891|emb|CAB71054.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|21539435|gb|AAM53270.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|23197660|gb|AAN15357.1| DEAD box RNA helicase RH12 [Arabidopsis thaliana]
 gi|332646656|gb|AEE80177.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
 gi|332646657|gb|AEE80178.1| DEAD-box ATP-dependent RNA helicase 12 [Arabidopsis thaliana]
          Length = 498

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 11/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + + + + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + +   
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   N+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 186 IDPNNNVI------QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 239

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 240 HQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 299

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    +      + +    +N+  +             V    + + +  +   
Sbjct: 300 FLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 358

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 359 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 419 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 478

Query: 362 EANVSVVWEPAPS 374
           E    +  +P PS
Sbjct: 479 ELGTEI--KPIPS 489


>gi|72074252|ref|XP_780035.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 1
           [Strongylocentrotus purpuratus]
 gi|115968722|ref|XP_001179006.1| PREDICTED: similar to DEAD-box RNA-dependent helicase p68 isoform 2
           [Strongylocentrotus purpuratus]
          Length = 883

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 186/386 (48%), Gaps = 11/386 (2%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE    + P  +   LS+ G+ + T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 108 VFEFHEASFPDYVMGELSKSGFSHPTPIQAQGWPVALSGRDLVGIAATGSGKTLSYLLPS 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA QV +        + +      GG    ++ 
Sbjct: 168 IVHINHQPFLERGVDGPIALVLAPTRELAQQVQQVAFAFGRSSKIKSTCVYGGAPKGQQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     VVLDEAD MLD+GF   I  I++    
Sbjct: 228 RDLERGVEICIATPGRLIDFLENNKTNLRRCTYVVLDEADRMLDMGFEPQIRKIMEQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA----LSDRDNA 234
            R++ M+SAT    +  LA+++ +D + VNI S     +    + + V        +   
Sbjct: 288 DRQVQMWSATWPKDVRNLAEDFIRDYIMVNIGSLTLSANHNILQIIDVCEDSEKDKKLIQ 347

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        +VFC T+       + +    +  + L G+ SQ ER   L   RDGR
Sbjct: 348 LLEEIMQEKDNKTLVFCETKRRTDDLVRRMRRDGWPAMCLHGDKSQPERDWVLSEFRDGR 407

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + +ATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ R G +     +N  +
Sbjct: 408 APILVATDVASRGLDVTDIKFVINYDYPNSSEDYVHRIGRTARSTRTGTAYTFFTRNNMK 467

Query: 355 RAERL---FREANVSVVWEPAPSVEA 377
           +A  L    +EA   +  +     E 
Sbjct: 468 QAADLINVLQEAKQVINPKLISLAEE 493


>gi|325119659|emb|CBZ55212.1| Eukaryotic initiation factor, related [Neospora caninum Liverpool]
          Length = 487

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 174/379 (45%), Gaps = 9/379 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   + + +   + E+G+   + +QE  +   L  K++L  A+ G+GKT AF + L 
Sbjct: 114 TDFEEYFLRRELLMGIFEKGFEKPSPIQEESIPIALAGKNILARAKNGTGKTAAFSIPLL 173

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                     +       L + PTRELA+Q    ++ +     V   V  GG S+  +  
Sbjct: 174 EKCQ------TSKRYIQGLILVPTRELALQTSAVVKAIGKHMNVQCMVSTGGTSLRDDIM 227

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L N  H++ GTPGR+ D       ++S+   VV+DEAD++L   F+  +E ++   P++
Sbjct: 228 RLYNPVHVLCGTPGRILDLANKGVADLSNCHMVVMDEADKLLSAEFQPIVEELIKFVPRE 287

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++LM+SAT    +      Y  DA  +N+  E             V    + + +  + 
Sbjct: 288 RQILMYSATFPVTVKDFKNKYLPDAHEINLMDELTLKGL-TQYYAFVEERQKVHCLNTLF 346

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + E  +    +   + Q  R+      R+G  R  +
Sbjct: 347 SKLQINQAIIFCNSVTRVELLAKKITELGYSCFYIHARMMQSHRNRVFHDFRNGACRCLV 406

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ++D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    R+
Sbjct: 407 SSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLITYDDRFNLYRI 466

Query: 360 FREANVSVVWEPAPSVEAI 378
             E    +   P+   EAI
Sbjct: 467 ESELGTEIQPIPSQIDEAI 485


>gi|237830427|ref|XP_002364511.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211962175|gb|EEA97370.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221487590|gb|EEE25822.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221507384|gb|EEE32988.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 569

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/491 (25%), Positives = 217/491 (44%), Gaps = 20/491 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     + +AL+E     LT +Q   +   L  +DVL +A+TGSGKT+AF +    
Sbjct: 86  TFESLDICDPVKKALAEMKMERLTEIQAKSIPRLLEGRDVLGAAKTGSGKTLAFLVPAVE 145

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +F P +    + I+PTREL++Q+      L       + + IGG +   E   
Sbjct: 146 LLY--QVKFLPRNGTGVIVISPTRELSLQIFDVAAELAKFLPQTLGLVIGGANRKHEVEK 203

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQ G +I+V TPGRL DH++       S+L ++V+DEAD +L +GF +++  IL   P+ 
Sbjct: 204 LQKGVNILVATPGRLLDHLQNTKGFQYSNLLSLVIDEADRILQIGFEEEMNAILQMLPQT 263

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT S  +  LA+   K  V V +         I    V+    +R   +   L
Sbjct: 264 RQTCLFSATQSAKVADLARLSLKKPVFVEVKDTVATVRGIQQGYVVCPAEERFLLLFTFL 323

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  +VF S+  SV    ++          + G+  Q  R +      +    + +
Sbjct: 324 KKNREKKIMVFFSSCMSVRFHDELFNYIDLPTTCIHGKKKQNARMSTYYDFCNAEKGILL 383

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAER 358
            TDVAARG+D+P ++ ++  +   +P+  +HR GRT R AG  G ++  +         R
Sbjct: 384 CTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAGGTGKALLFLMAEEIGFL-R 442

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI- 416
             ++A V +     PS + A  +   +R+++   +L     D  +      A H  + I 
Sbjct: 443 YLKQAGVPLNEYTFPSNKIANVQSQLERLIEKNYYLHKASQDAYRSYLHAYASHTLKDIF 502

Query: 417 ---AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
              A    R+ RA G   P  +        R +    ++ F   G               
Sbjct: 503 NVHALDLQRVARAFGFSVPPRVELNLKAKSRTKVDKKTQRFSGTGHKFSASNPY------ 556

Query: 473 VGSKQKAEARW 483
            G +++ + R 
Sbjct: 557 -GKREEGDRRQ 566


>gi|195155425|ref|XP_002018605.1| GL25891 [Drosophila persimilis]
 gi|194114758|gb|EDW36801.1| GL25891 [Drosophila persimilis]
          Length = 518

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/422 (27%), Positives = 215/422 (50%), Gaps = 11/422 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 76  LNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESP 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 136 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 309

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 310 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 369

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 370 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLLGK 429

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAAGFL 421
            +         V A++ER A+      L L  ++  +          +  D E  A    
Sbjct: 430 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTKGGRGHKRGGDNHDDSEHFAGARK 489

Query: 422 RI 423
           R+
Sbjct: 490 RM 491


>gi|17507121|ref|NP_491703.1| hypothetical protein F33D11.10 [Caenorhabditis elegans]
 gi|2773184|gb|AAB96704.1| Hypothetical protein F33D11.10 [Caenorhabditis elegans]
          Length = 399

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 87  SLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 141 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + ++++ 
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q++R   ++  R G  RV I
Sbjct: 261 DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+  R    +
Sbjct: 321 STDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDI 380

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 381 EQYYSTQIDEMPMNIADII 399


>gi|125987477|ref|XP_001357501.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
 gi|54645833|gb|EAL34571.1| GA21647 [Drosophila pseudoobscura pseudoobscura]
          Length = 518

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/422 (27%), Positives = 215/422 (50%), Gaps = 11/422 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 76  LNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLESP 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 136 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 309

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 310 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 369

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 370 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITIVSQYDIELYQRIEHLLGK 429

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH--DPEKIAAGFL 421
            +         V A++ER A+      L L  ++  +          +  D E  A    
Sbjct: 430 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTKGGRGHKRGGDNHDDSEHFAGARK 489

Query: 422 RI 423
           R+
Sbjct: 490 RM 491


>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 481

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 190/376 (50%), Gaps = 9/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ ++GY   T VQ   +   L  +DVL  AQTG+GKT  F L L   L    
Sbjct: 10  LSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQRL---A 66

Query: 67  DRFSPASAP------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            R +PA  P       AL + PTRELA Q+   +        +   +  GGV+++ +   
Sbjct: 67  TRAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYLPLKSTLIYGGVNINPQIDA 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL DH++ K ++++ ++ +VLDEAD MLD+GF  DI  IL   P KR
Sbjct: 127 LRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRMLDMGFIRDIRRILALLPAKR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA         V +A  N +   +  R   V    +   + +++ 
Sbjct: 187 QNLLFSATFSNEIRKLADGLLHAPAMVEVARRNAESELVAQRVHPVDSWRKRELLTHLVA 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF   ++  +R  + L +   +  A+ G  SQ  R+ AL   + G  RV +A
Sbjct: 247 SGDWRQVLVFTRMKSGANRLAEQLCKVGIEATAIHGNKSQPARTRALAGFKAGTVRVLVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+ +L  V++ EL   PE+ +HR GRTGRAG  G ++ ++    +     + 
Sbjct: 307 TDIAARGLDIEELPHVVNFELPHVPEDYVHRIGRTGRAGSTGEAISLVSPEERPLLADIE 366

Query: 361 REANVSVVWEPAPSVE 376
           +     +  +  P  E
Sbjct: 367 KLLTRRIDSQIVPGFE 382


>gi|225463591|ref|XP_002271334.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
          Length = 587

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 21/400 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 141 IKNFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 200

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E       P   P  L I P+RELA Q    +E             +   +CIG
Sbjct: 201 IMVALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI 
Sbjct: 261 GVDMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 321 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 381 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAIRE 380
           N         + L +EA   +        +P   V+AI +
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITD 539


>gi|18410973|ref|NP_567067.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|42572719|ref|NP_974455.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|79315530|ref|NP_001030884.1| DEAD box RNA helicase, putative (RH11) [Arabidopsis thaliana]
 gi|75329861|sp|Q8LA13|RH11_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 11
 gi|21593670|gb|AAM65637.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332646270|gb|AEE79791.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646271|gb|AEE79792.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
 gi|332646272|gb|AEE79793.1| DEAD-box ATP-dependent RNA helicase 11 [Arabidopsis thaliana]
          Length = 612

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/387 (31%), Positives = 198/387 (51%), Gaps = 18/387 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +I     +   +    YV  T VQ   +   L E+D++  AQTGSGKT AF   +
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     E  R S A  P A+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESD 389

Query: 231 RDNAIVNILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           + + ++++L             +VF  T+         L  + F   ++ G+ +QQER  
Sbjct: 390 KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREV 449

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++ 
Sbjct: 450 ALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIAT 509

Query: 346 FVIPQN---MQRRAERLFREANVSVVW 369
               +N   + R    L +EAN  V  
Sbjct: 510 AFFNENNAQLARSLAELMQEANQEVPE 536


>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
 gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
           51756]
          Length = 429

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 189/371 (50%), Gaps = 1/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A   RGY   T +Q   +   L+  D+L +AQTG+GKT AF L +   L  + 
Sbjct: 25  LDPALCAAAVARGYEQATPIQARAIPEILKGHDILAAAQTGTGKTAAFALPILHRLARDP 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL + PTRELA QV   +     +  V   + IGGV +  +   L+NGA 
Sbjct: 85  VSSGP-RPVRALILVPTRELAAQVEDNIRLYRGQMPVRSLMLIGGVKIGPQMEQLRNGAD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ + L +  ++ +VLDEAD MLD+GF  DI  I+   P KR+ L+FS
Sbjct: 144 IVVATPGRLLDHLQQRSLRLDRVETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LA+      + V +   N     I  R + V    + + +++++  H    
Sbjct: 204 ATFSPEIRQLAEGLLHQPIAVEVTPANATVDSITQRVIRVDQERKRDLLLHLMDAHQWHQ 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    R  + +    F  +A+ G  SQ  R+ AL   + G  R  +ATD+AAR
Sbjct: 264 VLIFTRTKHGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALVATDIAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ EL    E+ +HR GRTGRAG  G +V ++    + + + + R     
Sbjct: 324 GIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGEDGEAVSLVSGEERSQLQAVERLLRRR 383

Query: 367 VVWEPAPSVEA 377
              E  P  EA
Sbjct: 384 FDLEQVPGFEA 394


>gi|107099414|ref|ZP_01363332.1| hypothetical protein PaerPA_01000426 [Pseudomonas aeruginosa PACS2]
          Length = 624

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 208/463 (44%), Gaps = 16/463 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDRFSP 71
              GY   T VQ+  +   L+ +D++V+AQTG+GKT  F L +   L      + +    
Sbjct: 2   EAAGYSQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVLERLFPAGHPDREHRHG 61

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
                 L + PTRELA QV    +       +      GGV ++ + + L  G  ++V  
Sbjct: 62  PRQARVLVLTPTRELAAQVHDSFKVYARDLPLNSTCIFGGVGMNPQIQALAKGVDVLVAC 121

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D      +++SH++ +VLDEAD MLD+GF  D++ +L   P KR+ L+FSAT S 
Sbjct: 122 PGRLLDLAGQNKVDLSHVEILVLDEADRMLDMGFIHDVKKVLAKLPPKRQNLLFSATFSK 181

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     +  R+ +   N     I+ R   +    +   + +++     +  +VF 
Sbjct: 182 DIVDLANKLLHNPERIEVTPPNTTVERIEQRVFRLPAPQKRALLAHLVTVGAWEQVLVFT 241

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R  + L +H     A+ G  SQ  R+ AL   +    R+ +ATD+AARG+D+ 
Sbjct: 242 RTKHGANRLAEYLTKHGLPAAAIHGNKSQNARTKALADFKANDVRILVATDIAARGLDID 301

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV--- 368
            L  V++ EL +  E+ +HR GRTGRAGR G ++ ++  + ++  + + +     +    
Sbjct: 302 QLPHVVNYELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKAIEKMTRQRIPDGD 361

Query: 369 ---WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR--- 422
              ++P   +  + + + +   Q     D  +   ++         +P+   A       
Sbjct: 362 AQGFDPEAVLPEVAQPEPREAPQKQPRRDKERRSSRERKPKDAQASNPDSNVAAAQDGTE 421

Query: 423 ---IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                R       +    +  + + R   ++R  K+      +
Sbjct: 422 KPAGKRRRRGGKNKENREAGQAQQPRQSREARPAKLNRPPEVD 464


>gi|307721464|ref|YP_003892604.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979557|gb|ADN09592.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 423

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 117/402 (29%), Positives = 202/402 (50%), Gaps = 7/402 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + + +A+++ GY   T VQ   +   L +KDV  +AQTG+GKT AF L +  
Sbjct: 2   SFEKLGIFKPLLDAINDLGYKEPTLVQTRAIPLVLGKKDVFATAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +   +    A+ ++PTREL++Q+  ++        +   + +GG  + ++R  
Sbjct: 62  KM----RKHVESKGVRAIILSPTRELSIQIYEDITAYSKYMDIKTTILVGGKDLQKQREA 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL +HI     ++  ++  VLDEAD MLD+GF  DI  I    PK+ 
Sbjct: 118 LKKGTEIVIATPGRLLEHIENGL-SLKDVEVFVLDEADRMLDMGFTKDIRKIHPLLPKRH 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  +  L+K        +  A +N     I+  A LV    +   +  ++ 
Sbjct: 177 QTLLFSATFSDKVRKLSKLILTKPAFIETAKKNTTVDTINQVAYLVDTVRKAELLAYLIG 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+ S    ++ L +   +   + G+ ++  R   L   ++G+ RV +A
Sbjct: 237 SRNFPQVLVFTRTKVSADALSEELKKDGLKCGVIHGDRTKANRLKTLNQFKEGKIRVLVA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+ +L  VI+ EL S PE+ +HR GRTGRAGR+G ++ +I    +   + + 
Sbjct: 297 TDIASRGLDIEELPYVINYELPSIPEDYVHRVGRTGRAGREGEAISLIDIYEKYDIKDIE 356

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           +     +  E     E       + + +  L  +  + D KK
Sbjct: 357 KLIGQKIPQETVEGFEPDPNIRRKDVDEVKLKAEHKKPDNKK 398


>gi|222148785|ref|YP_002549742.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221735771|gb|ACM36734.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 516

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 194/366 (53%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+++ GY   T +Q   + P L  +D+   AQTG+GKT +F L + + L    
Sbjct: 1   MSQKVLSAVTDAGYTVPTPIQAGAIPPALMRRDICGIAQTGTGKTASFVLPMLTLLEKGR 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    E       + +A+ IGGVS   + R L+ GA 
Sbjct: 61  AR---ARMPRTLIMEPTRELAAQVAENFEKYGKNHKLNIALLIGGVSFDEQDRKLERGAD 117

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L FS
Sbjct: 118 VLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTLFFS 177

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRYHG 243
           AT+ P I  LA  + ++  R+ +A  +     +  R V         R      I     
Sbjct: 178 ATMPPEIQKLADKFLQNPERIEVAPPSSTAKTVTQRLVACQNKDYEKRSTLRDIIRAQDD 237

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNAI+FC+ +  V+   + L  H F V AL G++ Q+ R+N L   +D +  + +A+DV
Sbjct: 238 LKNAIIFCNRKKDVADLFRSLERHGFSVGALHGDMDQRSRTNMLAGFKDNQITLLVASDV 297

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G +  ++ ++  +  + + +  
Sbjct: 298 AARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGRAFTLVTKSDAKYLDAIEKLI 357

Query: 364 NVSVVW 369
                W
Sbjct: 358 GEKPEW 363


>gi|157873697|ref|XP_001685353.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
          Length = 614

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 188/387 (48%), Gaps = 16/387 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N
Sbjct: 142 LAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNN 201

Query: 67  -DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +R  P +   AP AL ++PTREL++Q+  E      +TG    V  GG     +  +L 
Sbjct: 202 LNRAKPTNSQAAPSALVLSPTRELSIQIYEEGRKFTYRTGFRCVVVYGGADPRHQIHELT 261

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         
Sbjct: 262 RGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPP 321

Query: 183 LM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT    I  +A+ +      + +        +I      V   D+   ++
Sbjct: 322 PGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDMDKRGCLL 381

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  R
Sbjct: 382 EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCR 441

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--NMQR 354
           V +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++    +  N+  
Sbjct: 442 VLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTAISFNDKNRNIVD 501

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
               L RE N +V     P V+A+ ++
Sbjct: 502 DLIPLLRETNQTV----LPEVQALAKK 524


>gi|237831253|ref|XP_002364924.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|211962588|gb|EEA97783.1| ATP-dependent helicase, putative [Toxoplasma gondii ME49]
 gi|221487231|gb|EEE25477.1| ATP-dependent helicase, putative [Toxoplasma gondii GT1]
 gi|221506914|gb|EEE32531.1| ATP-dependent helicase, putative [Toxoplasma gondii VEG]
          Length = 395

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+     + +   +   G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L    
Sbjct: 23  TFDAMGFKEDLLRGIYAYGFERPSAVQQRAIVPIMKGRDVIVQSQSGTGKTCVFCLGCLQ 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +         P AL ++PTRELA Q  +    L     V V  CIGG  V  + R 
Sbjct: 83  CIDPK------VRDPQALILSPTRELAEQSQKVCLALGDYMSVQVHCCIGGKRVGDDIRA 136

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+   I  +  +  H+K +VLDEADEML+ GF++ +  I    P   
Sbjct: 137 LEAGVHIVSGTPGRVFHMIAQRHFSTRHIKLLVLDEADEMLNRGFKEQVYDIYRYLPPST 196

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D  RV +  +      I    V +     + + + ++ 
Sbjct: 197 QVVLVSATLPHEVLEMTTKFMDDPFRVLVKRDELTLEGIKQFFVAVEREQWKFDTLTDLY 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+A V    + + E  F V  + G++ QQER   ++  R G++RV I
Sbjct: 257 DTLTITQAVIFCNTKAKVEWLAQKMKEANFTVSRMHGDMPQQERDEIMRQFRGGQSRVLI 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV  RG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 317 ATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILRDI 376

Query: 360 FREANVSVVWEPAPSVEAI 378
            +     +   P    + I
Sbjct: 377 EQYYATQIDEMPMNVADLI 395


>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
 gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
          Length = 641

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 192/378 (50%), Gaps = 11/378 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    +   +   + + GY+  T +Q+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 216 ITSFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPI 275

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +TLL +ND  +P + P  + +APTRELA+Q+  E       T + V V  GG +   + 
Sbjct: 276 INTLLNDNDDMTPGN-PFVVVVAPTRELALQISEEARKFARGTILKVVVAYGGTATRHQI 334

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            ++ NG HI+V TPGRL D +  + +    +K VVLDEAD MLD+GF   +E +++    
Sbjct: 335 DNVNNGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADRMLDMGFMPAVEKMMNHETM 394

Query: 179 K----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           K    R+ LMFSAT    I  LA  +  + + V +       SD++     V    +   
Sbjct: 395 KSKEERQTLMFSATFPGQIQELAGQFLNNYIFVAVGIVGGASSDVEQNIYEVTKFQKRKK 454

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL  +  K  +VF  T+ +      +L+E  F   ++ G+  Q+ER  AL+  + G+
Sbjct: 455 LEEILESNDPKGTLVFVETKRNADYLASLLSETKFPTTSIHGDRLQREREEALRDFKSGK 514

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + IAT VAARG+D+ ++  VI+ +L    ++ +HR GRTGR G KG +          
Sbjct: 515 MYILIATSVAARGLDIRNVAHVINYDLPKGIDDYVHRIGRTGRVGNKGRATSFFDMENDS 574

Query: 355 ----RAERLFREANVSVV 368
                  ++  +A   V 
Sbjct: 575 AIAGDLVKILTQAGQQVP 592


>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Pichia angusta DL-1]
          Length = 470

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 109/381 (28%), Positives = 198/381 (51%), Gaps = 10/381 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +F+ +     I +A+ +  +   T +Q   L   L+ +D++  AQTGSGKT AF + +
Sbjct: 66  VTLFKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDIIGIAQTGSGKTAAFAIPI 125

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L      +       A  +APTRELA Q+    + L    G+  +  +GG+ +  + 
Sbjct: 126 LQALWEAQTPY------FACVLAPTRELAYQIRETFDALGVNMGLRCSTIVGGMDMMEQA 179

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++L    H++V TPGRL DH+          LK +V+DEAD +LD+ F   ++ IL+  P
Sbjct: 180 KELMRKPHVIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDMEFGPVLDRILNIIP 239

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+  +FSAT++  +  L +    D V++ +  +      +    ++V    ++  ++ 
Sbjct: 240 RERKTYLFSATLTSKVEKLQRASLIDPVKIAVNDKYSTVDTLIQTLMVVPDGYKNTYLIY 299

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  K+ IVF  T A   +   +     F  + L G+L+Q +R  AL   + G  ++
Sbjct: 300 LLNEYVGKSVIVFARTCAHAQKVALLARILGFSAIPLHGQLTQAQRLGALNKFKSGDKQI 359

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ ++ ++ +  +HR GRT RAGR G SV ++ Q       
Sbjct: 360 LVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGRSGKSVSLVTQYDLELIL 419

Query: 358 RLFREANVSVVWEPAPSVEAI 378
           R+ +  ++ +  E  P+   I
Sbjct: 420 RIEKVIDMKLPKE-VPNKNEI 439


>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
 gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
 gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
          Length = 439

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 187/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPCILILTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVTRGIVFVRRREDAREVSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|2500517|sp|Q40471|IF4A9_TOBAC RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9;
           AltName: Full=ATP-dependent RNA helicase eIF4A-9
 gi|485951|emb|CAA55736.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 188/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E 
Sbjct: 47  LKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----LLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+S+  +  + +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQRFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
 gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
          Length = 560

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 199/390 (51%), Gaps = 5/390 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++   + +   ++E GYV+ T +QE  +   L  +DV+  AQTG+GKT +F L +  
Sbjct: 106 VFEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLPMMD 165

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +   A  P +L + PTRELA+QV            +  A+ IGG S+  +R  
Sbjct: 166 ILAGSRAK---ARMPRSLILEPTRELALQVAENFVKYGTHMKLNHALLIGGESMSDQRDV 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL D      + ++  K +V+DEAD MLD+GF  D+E I+   P  R
Sbjct: 223 LDKGVDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRMLDMGFIPDVERIVSLLPPLR 282

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  LA  + ++   +++++     + I      V   D+  A+  ++R
Sbjct: 283 QTLFFSATMAPEIRKLADAFLQNPKTISVSAPASVATTITAGLAFVQPEDKRRALRRLIR 342

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NA++FC+ +  V    K L++H F+  AL G+L Q  R   L+  + G  ++ + 
Sbjct: 343 SQDVQNALIFCNRKRDVDILHKSLSKHGFKAGALHGDLPQSVRFATLEKFKAGELQLLVC 402

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + ++    E+ +HR GRTGRAGR+G +  +   +  +    + 
Sbjct: 403 SDVAARGIDIGGLSHVYNFDVPFRDEDYVHRIGRTGRAGREGHAYTIATADDVKLVAAIE 462

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 +       +E +   +       P
Sbjct: 463 ALTGKPIPRIEIEGLEPVTPEELAEAASAP 492


>gi|157105113|ref|XP_001648723.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869079|gb|EAT33304.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 400

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 195/373 (52%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +A+  ++    
Sbjct: 34  LREELLRGVYAYGFEKPSAIQQRSILPIVKGRDVIAQAQSGTGKTATFSIAILQSMD--- 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +       L ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H
Sbjct: 91  ---TTLRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH 147

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++ + S
Sbjct: 148 VVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLIS 207

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D +R+ +  +      I    V +     + + + ++       
Sbjct: 208 ATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV A
Sbjct: 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  + 
Sbjct: 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 387

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 388 QIDEMPMNVADLI 400


>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
 gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
          Length = 453

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/415 (28%), Positives = 210/415 (50%), Gaps = 13/415 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +  
Sbjct: 26  SFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +   
Sbjct: 86  ALLDAPQR------LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLA 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+ 
Sbjct: 140 LAKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRD 199

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL
Sbjct: 200 RKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYIL 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +
Sbjct: 260 NELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+
Sbjct: 320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                  +   P    E +    R  +AQR  +  L     +   +   D    +
Sbjct: 380 EHLIGKKLPAFPMQEEEVMMLTERVAEAQRFARMELREQGEKKRSRNADDDDTEE 434


>gi|255729496|ref|XP_002549673.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
 gi|240132742|gb|EER32299.1| hypothetical protein CTRG_03970 [Candida tropicalis MYA-3404]
          Length = 554

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/410 (25%), Positives = 186/410 (45%), Gaps = 9/410 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    GV   V  GG S+  +  
Sbjct: 90  QLVKPKLNKV------QALILVPTRELALQTSQVVRTLGKHLGVQCMVTTGGTSLRDDIV 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  HI+VGTPGR+ D    K +++S     V+DEAD+ML   F+  IE IL+  P  
Sbjct: 144 RLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPAN 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQALLFSATFPLAVKSFMDQHLNKPYEINLMDELTLKGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            +E    +   PA   +A+   +    +  P  +D +      + +    
Sbjct: 383 EQELGTEIKPIPATIDKALYVAENADAVPRPFRIDELPKGNATVHNRGYE 432


>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
 gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
          Length = 456

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 212/422 (50%), Gaps = 11/422 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   + + +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +
Sbjct: 8   VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              LL             P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+
Sbjct: 68  LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
              ++   L    H++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL+  P +R   +FSAT++  +  L +   ++ V++  AS+      +  +   VA   +
Sbjct: 188 ILEEIPLERETFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D  +V IL       +++F  T         VL    F+ + +SG+++Q +R  AL   +
Sbjct: 248 DCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 ++ +     +   PA   E  ++ ER A+      + +    G +++  D   +
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEES 427

Query: 410 KH 411
           + 
Sbjct: 428 ER 429


>gi|170722989|ref|YP_001750677.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169760992|gb|ACA74308.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 452

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 20  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLV--- 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D         AL + PTRELA Q  ++++     T +   +  GG     +   L+    
Sbjct: 77  DLKGARVEIRALILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 137 VLIGTPGRLLEQLNAGNLDLSHVQVMILDEADRMLDMGFAEDMERLCKECENREQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++  +  +L     
Sbjct: 197 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQVITADHDQHKEAIVQWLLANEKF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +TR    R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 257 DKAIIFTNTRVLADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 317 ARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 377 QQFERRVIKEVK 388


>gi|163801279|ref|ZP_02195178.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
 gi|159174768|gb|EDP59568.1| ATP-dependent RNA helicase RhlE [Vibrio sp. AND4]
          Length = 472

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 124/360 (34%), Positives = 185/360 (51%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L   N
Sbjct: 8   LSVPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILELL--SN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ + + L+ GA 
Sbjct: 66  GPRVRANHVRALILTPTRELAAQVQESVFTYSQHLPLNSAVVFGGVKINPQMQRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  ILD  PK+R+ L+FS
Sbjct: 126 VLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILDLLPKQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V +++   N     ++          +   +V +++    + 
Sbjct: 186 ATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPSDAKKKAPMLVKLIKEGDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  K L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLAKFLIDEKLPAAAIHGNKSQSARTKALADFKSGAIRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++           ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEMGKAISLVSALEAPELFAIERLIQQL 365


>gi|18424420|ref|NP_568931.1| DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana]
 gi|108861883|sp|Q8GY84|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
          Length = 456

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/422 (28%), Positives = 213/422 (50%), Gaps = 11/422 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   + + +A    G+ N + +Q   L   L  KDV+  AQTGSGKT AF + +
Sbjct: 8   VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67

Query: 59  ASTLLA------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              LL             P  A  A  ++PTRELA+Q+  + E L A   +  AV +GG+
Sbjct: 68  LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
              ++   L    H++V TPGRL DH+   KG ++  LK +VLDEAD +L+  F   +  
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL+  P +R+  +FSAT++  +  L +   ++ V++  AS+      +  +   VA   +
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYK 247

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D  +V IL       +++F  T         VL    F+ + +SG+++Q +R  AL   +
Sbjct: 248 DCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFK 307

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + + TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+ + ++ Q 
Sbjct: 308 AGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQY 367

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 ++ +     +   PA   E  ++ ER A+      + +    G +++  D   +
Sbjct: 368 ELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDEES 427

Query: 410 KH 411
           + 
Sbjct: 428 ER 429


>gi|254459373|ref|ZP_05072794.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
 gi|207083986|gb|EDZ61277.1| ATP-dependent RNA helicase RhlE [Campylobacterales bacterium GD 1]
          Length = 412

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 201/376 (53%), Gaps = 4/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL +  +   T +QE ++   L  +DV+  A+TGSGK+ ++ L +   L  + 
Sbjct: 8   LSSQINKALVKHNFKEPTPIQEKVIPLVLDGRDVMAKAKTGSGKSASYILPILELL--QK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLY--AKTGVVVAVCIGGVSVHRERRDLQNG 124
            R    +    L + PTREL +QV +  E      +T   V   IGG  +  +   +Q G
Sbjct: 66  RRGEGKAKIKVLVLTPTRELTLQVAQAFENFGEFMQTKPKVVSVIGGEGIGDQLYAIQQG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V T GR  D +  K +N+SHL+ +VLDEAD+ML+LGF ++++ +L++ P+KR+ L+
Sbjct: 126 CDILVATSGRFLDVLSKKQMNLSHLEFLVLDEADKMLNLGFAEELDLVLEAIPEKRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +A    +D+V V+I  +      I  R + V   +R   + ++++    
Sbjct: 186 FSATYPEKILNIASRITQDSVEVSIDEDVPTVDTIIQRVIEVNRDNRGPLLRHLIKSEKL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ +VF + + +     +   ++ F   +  G+L Q++R+  L   RD +  +  ATD+A
Sbjct: 246 KHILVFMANKRATDNIAEKFRKYGFTAESFHGDLHQEDRTYTLNEFRDKKINILFATDIA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ ++E VI+ +L  +P + +HR GRT RAG+ G+++  I    Q     + ++  
Sbjct: 306 ARGLDIENIECVINFDLPRSPTDYIHRIGRTARAGKSGLAISFISFEDQAHFSVIEKKCK 365

Query: 365 VSVVWEPAPSVEAIRE 380
           V +  E     E I E
Sbjct: 366 VKIEKEQIEGFELIGE 381


>gi|194751055|ref|XP_001957842.1| GF23818 [Drosophila ananassae]
 gi|190625124|gb|EDV40648.1| GF23818 [Drosophila ananassae]
          Length = 795

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 174/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + 
Sbjct: 272 FDEPLLKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLMHLMDQK 331

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 332 E-LQPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 390

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 391 IVVATPGRMIDMVKMKATNLKRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 450

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 451 ATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVFVFPNPLQKWNWLLCHLVKFLSE 510

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A        L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 511 GSVLIFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKKKECDILVATDVA 570

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 571 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 627


>gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
          Length = 536

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERL--TG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREA 363
           GID+P L  V++ EL +  E+ +HR GRTGRAG  G ++ +   +        ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFGIERLIQQV 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
              V  +      A+ E   
Sbjct: 366 LPRVELDGFKPTNAVPESKL 385


>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
 gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
          Length = 540

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 191/380 (50%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L+ KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILERL--TG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 66  GPRVRANQVRALILTPTRELAAQVQECVFTYSRHLPLSSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL+  PK R+ L+FS
Sbjct: 126 VLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILELLPKNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V ++++  N     ++       +  +   +V +++    + 
Sbjct: 186 ATFSDEIRALAKGLVNDPVEISVSPANSTAKTVEQCVYPADVKKKAPMLVKLIKDGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L E   +  A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKRGANKLAAFLNEEGIKAAAIHGNKSQGARTTALAEFKSGELRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV---IPQNMQRRAERLFREA 363
           GID+P L  V++ EL +  E+ +HR GRTGRAG  G ++ +   +        ERL ++ 
Sbjct: 306 GIDIPQLPQVVNFELPNIAEDYVHRIGRTGRAGEAGRAISLVCAVEAPDLFGIERLIQQV 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
              V  +      A+ E   
Sbjct: 366 LPRVELDGFKPTNAVPESKL 385


>gi|56756857|gb|AAW26600.1| SJCHGC06283 protein [Schistosoma japonicum]
          Length = 402

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 191/367 (52%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT   G+++   L  + 
Sbjct: 36  LRDDLLRGIYAYGFERPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATLGISILQMLDTQ- 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q+ + +  L   T V    C GG ++  + R L  G H
Sbjct: 95  -----LRETQALVLSPTRELASQIQKVILALGDYTNVHCHACYGGTNIGEDIRKLDYGQH 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ GTPGR+ D IR + L    +K  VLDEADEMLD GF++ I  +    P   ++++ S
Sbjct: 150 VISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLS 209

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  + VR+ +  +      I    V +     + + + ++       
Sbjct: 210 ATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTVT 269

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++FC+T+  V+  T+ + ++ F V ++ G++ Q+ER   ++  R G +RV I TD+ A
Sbjct: 270 QSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREKIMKDFRAGDSRVLITTDLWA 329

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    + +  + 
Sbjct: 330 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYST 389

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 390 QIDEMPM 396


>gi|254578784|ref|XP_002495378.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
 gi|238938268|emb|CAR26445.1| ZYRO0B09856p [Zygosaccharomyces rouxii]
          Length = 540

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 189/377 (50%), Gaps = 10/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  + + +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 109 ITSFDEAGFPDYVLKEVKAEGFAAPTGIQCQGWPMALSGRDMVGVAATGSGKTLSYCLPA 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E       + +      GGV   ++ 
Sbjct: 169 IVHINAQ-PLLAPGDGPVVLVLAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPRGQQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  GA IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 228 RDLARGAEIVIATPGRLIDMLEINKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  D ++V I S     +     +          DR + 
Sbjct: 288 DRQTLMWSATWPKEVKQLARDYLTDPIQVQIGSLELSASHTIKQVVEVISEFEKRDRLSK 347

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            + I         +VF ST+ +    T+ L +  +  +A+ G+  Q+ER   L+  ++GR
Sbjct: 348 HLEIASEDQDSKVLVFASTKRTCDDITQYLRQDGWSALAIHGDKDQRERDWVLEEFKNGR 407

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG KG ++    +  + 
Sbjct: 408 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGAKGTAISFFTEGNKG 467

Query: 355 R---AERLFREANVSVV 368
                  + REA   + 
Sbjct: 468 LGASLISIMREAKQEIP 484


>gi|254491400|ref|ZP_05104579.1| DbpA RNA binding domain family [Methylophaga thiooxidans DMS010]
 gi|224462878|gb|EEF79148.1| DbpA RNA binding domain family [Methylophaga thiooxydans DMS010]
          Length = 460

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 204/397 (51%), Gaps = 14/397 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +AL   GY ++T++Q   L   L+  D++  A+TGSGKT AFG+ L   L   N
Sbjct: 11  LSKAQLDALDSLGYESMTAIQAQSLPEILKGNDLIAQAKTGSGKTAAFGIGLLQKL---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRERRDLQNGA 125
            RF       AL + PTRELA QVG+E+  L      +  V   GG  +  +   L++GA
Sbjct: 68  PRF---FGAQALVLCPTRELAEQVGKEIRKLARFMPNIKLVMLCGGKPIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R   L +  L  +VLDEAD MLD+GF D ++ I+  +PK R+ L+F
Sbjct: 125 HIVVGTPGRVQDHLRKNTLKLDGLTTLVLDEADRMLDMGFADAMQAIIGQTPKNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +++   +                I      V+  DR+ A++++  ++  +
Sbjct: 185 SATYPDTIQHMSRQI-QRNPVTVTVEAEHNKEVIQQVFYEVSKHDRNTALLSLFAHYQPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+         L       +A+ G+L Q++R   L    +    V +ATDVAA
Sbjct: 244 TCVVFCHTKKQCDDVADFLNNEQIDALAIHGDLDQRDRDQVLVRFANNSCPVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++VI+ EL  +PE  +HR GRTGRAG+ G+++ ++  N   R   +   +N 
Sbjct: 304 RGLDIKALQMVINYELPRDPEVYVHRIGRTGRAGQTGLAMSIVTPNETPRILAIEEYSN- 362

Query: 366 SVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEK 401
                P P  E  +   +    LQ P+    I    K
Sbjct: 363 ----RPCPCDELTLLNNNVDFSLQAPMATIQIDAGRK 395



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD----GVDL 520
             +   +  G K K     ++  L   +G+    IG I +    ++V +        +  
Sbjct: 384 PMATIQIDAGRKGKLRPGDILGALTGDAGLKGSQIGKIDIFDMSSYVAIEKSAIRQALSY 443

Query: 521 LRRTVKLDKGIQLKYL 536
             +     + ++ + L
Sbjct: 444 FSQGKIKGRNVRARKL 459


>gi|146184027|ref|XP_001027635.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143373|gb|EAS07393.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 713

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 210/482 (43%), Gaps = 16/482 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ I   ++   +   + +Q       L   D++  A+TGSGKT++F L     + A+
Sbjct: 107 HFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQ 166

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA+Q+ RE E     + +  A   GG   + +R  LQ G 
Sbjct: 167 -PTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGV 225

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D +  +   +  +  +VLDEAD MLD+GF   I  IL      R+ LMF
Sbjct: 226 DVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
           SAT    +  LA++Y K+        ++    +  I     +   S + N ++       
Sbjct: 286 SATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLT 345

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+      +++L +  F+ +A+ G+ +Q++R   +   + G  R+ IATD
Sbjct: 346 QKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATD 405

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---- 358
           VA+RG+D+ D+  V + +     E+ +HR GRTGRAG  G +V  +     ++  R    
Sbjct: 406 VASRGLDVKDVSHVFNYDFPKVMEDYVHRIGRTGRAGAYGCAVSFLTFEDDKKISREYVQ 465

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA- 417
           +  +A   +  +    + +I  R   +       + S   D KK      +K    +   
Sbjct: 466 MLHDAKQEIPIDLL-DLASINPRYRTQYKT----VSSSYYDIKKFNSADTSKPSENQNVS 520

Query: 418 --AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             A     + +     +  +       R R R   ++       + N   S  +  S GS
Sbjct: 521 NTANSSDKYTSSSSYNQYKSKKDEDDKRSRSRSPYKSENNNRWDKYNRTKSPEYRSSNGS 580

Query: 476 KQ 477
             
Sbjct: 581 SH 582


>gi|19113116|ref|NP_596324.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe 972h-]
 gi|1174456|sp|Q09181|DHH1_SCHPO RecName: Full=Putative ATP-dependent RNA helicase ste13
 gi|703066|dbj|BAA06178.1| RNA helicase [Schizosaccharomyces pombe]
 gi|4176526|emb|CAA22882.1| ATP-dependent RNA helicase Ste13 [Schizosaccharomyces pombe]
          Length = 485

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 168/375 (44%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L     V V V  GG ++  +   L
Sbjct: 106 VDTKKSKI------QTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRL 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HIVVGTPGR+ D       + S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 160 NDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQ 219

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + ++SAT    +      +      +N+  E             V  S + + +  +   
Sbjct: 220 ISLYSATFPLIVKNFMDKHLNKPYEINLMDELTLRGV-TQYYAFVDESQKVHCLNTLFSK 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 279 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCS 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G +G+++  I    +    R+  
Sbjct: 339 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIEN 398

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P PS++
Sbjct: 399 ELGTEIQPIP-PSID 412


>gi|251778083|ref|ZP_04821003.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082398|gb|EES48288.1| cold-shock deAd box protein a [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 367

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 183/366 (50%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I   L++ G    T++QE  +   L  KDV+  A+TG+GKT+AF L +   +  + 
Sbjct: 8   INENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNISPDT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    L ++PTRELA+Q+  E + L     + +    GG  +  + + L++  H
Sbjct: 68  ------NGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKHNVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+  + KK + L FS
Sbjct: 122 LVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y  D + ++I S       I  + V      + +++   L+      
Sbjct: 182 ATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQEDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+         L +       +  ++ Q +R   ++  R+   +  IATDVAAR
Sbjct: 242 AIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  + + +    PE+ +HR GRTGRAG  G +   +          +  +   +
Sbjct: 302 GIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSNLLNAIETKLGFT 361

Query: 367 VVWEPA 372
           +     
Sbjct: 362 IPRREI 367


>gi|184159623|ref|YP_001847962.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|332876108|ref|ZP_08443892.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
 gi|183211217|gb|ACC58615.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|332735726|gb|EGJ66769.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6014059]
          Length = 615

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 158/599 (26%), Positives = 243/599 (40%), Gaps = 44/599 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 423 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPR 478

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P  +F      G D  RR    D+ 
Sbjct: 479 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDRPKRSF-----GGEDRPRREFNSDRP 525

Query: 531 IQLKYLG------------GEKPDFRGYKSSGFKSKNSQ----DGATKRFKRFKGASKN 573
            +                 G + D++  + +GF  +  +    +   +R   F    K 
Sbjct: 526 RREGGFNDKPRFDSNDDNRGNRVDYKPRRENGFGDRPQRSFGGEDRPRREGGFGDRPKR 584


>gi|126315120|ref|XP_001365663.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 700

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 261 TFEEADLCQTLNNNITKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILA 320

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T +   V  GG  +   
Sbjct: 321 HMMRDGITASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCIRPVVIYGGTQLGHS 380

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  ++ +VLDEAD MLD+GF  +++ ++    
Sbjct: 381 IRQIMQGCNILCATPGRLMDIIGKEKIGLRQIRYLVLDEADRMLDMGFGPEMKKLISFPG 440

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ +             SD+    + V    + 
Sbjct: 441 MPSKDQRQTLMFSATFPEEIQRLAGEFLKTDYLFVAVGQVGGACSDVQQTVLQVGQYSKR 500

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 501 EKLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 560

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P+ 
Sbjct: 561 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNIGKAISFFDPEP 620

Query: 352 MQRRAERLFR 361
               A+ L +
Sbjct: 621 DSHLAQPLVK 630


>gi|86138673|ref|ZP_01057246.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
 gi|85824733|gb|EAQ44935.1| putative ATP-dependent RNA helicase protein [Roseobacter sp.
           MED193]
          Length = 431

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 202/373 (54%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++ G  + T +Q   +   L  +DVL  AQTG+GKT AFG+ L S +L   
Sbjct: 3   LPDQVLARLADMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRMLDYG 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L +APTRELA Q+   L+ L   T + + + +GGVS++ + + +  G  
Sbjct: 63  RKPA-AHTVRGLVLAPTRELANQIAATLKALTEGTPMKIGLVVGGVSINPQIQRISRGTD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 122 ILVATPGRLLDILDRNALDLGSCDFLVLDEADQMLDLGFIHALRKISSLLPEERQTMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y    VR+ +    +  + +      +A +++ + +  +L  H  + 
Sbjct: 182 ATMPKQMNEIANSYLNRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLTEHKDER 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  KVL +  F   A+ G  SQ +R  AL   + G+ +V +ATDVAAR
Sbjct: 242 TLVFGRTKHGMEKLMKVLEKSGFAAAAIHGNKSQGQRERALAAFKSGQIKVLVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + + +   ++
Sbjct: 302 GLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCSPDEMEELKAIQKVMKIT 361

Query: 367 V------VWEPAP 373
           +       WEP P
Sbjct: 362 IPTASGSPWEPVP 374


>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
          Length = 444

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 187/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHPDSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|195171504|ref|XP_002026545.1| GL21821 [Drosophila persimilis]
 gi|194111461|gb|EDW33504.1| GL21821 [Drosophila persimilis]
          Length = 812

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 177/370 (47%), Gaps = 5/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + 
Sbjct: 282 FDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQR 341

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 342 E-LKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGAE 400

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 401 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 460

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 461 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 520

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A        L       + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 521 GSVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 580

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R  N
Sbjct: 581 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR--N 638

Query: 365 VSVVWEPAPS 374
           +    +  P 
Sbjct: 639 LEGADQEVPE 648


>gi|167526114|ref|XP_001747391.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774226|gb|EDQ87858.1| predicted protein [Monosiga brevicollis MX1]
          Length = 504

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 207/390 (53%), Gaps = 11/390 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   +V+ EA +   +   T +Q   +   L+ KDV+  A+TGSGKT AF L +  
Sbjct: 82  TFADLGLAEVLCEACATLKFTKPTEIQRRSIPLALQGKDVIGLAETGSGKTAAFALPVLH 141

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLA   +        AL +APTRELA Q+ +    L +  G+  AV +GG+ +  +   
Sbjct: 142 DLLATKGK----KEFFALVLAPTRELAFQIRQTFNALGSPIGLKSAVLVGGIDMTTQAIA 197

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+++ TPGRL DH+          L+ +++DEAD ML++ +  +++ IL   P++
Sbjct: 198 LAKKPHVLIATPGRLVDHLENTKGFHLKALRYLIMDEADRMLNMDYEKELDKILAVIPRE 257

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT++  +  L +   +D V+V + S+ +    +  R + V    +D  ++ ++
Sbjct: 258 RRTFLFSATMTSKVGKLQRASLRDPVKVEVNSKYKTVDTLIQRYMFVPQKFKDCYLIYLM 317

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+FCST  +V + T VL +  F  V L G++SQ +R  AL         + +
Sbjct: 318 NQLRGNSFIIFCSTCNNVMKATLVLRDLGFDAVCLHGQMSQPKRLGALAKFTSQSHTILV 377

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ +  Q      +R+
Sbjct: 378 ATDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGHAITIATQYDVELFQRI 437

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQR 385
                  +   P  S + +    R  DAQR
Sbjct: 438 EALIGKKMEEYPTESSQVLQLLERVSDAQR 467


>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
          Length = 633

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 193/372 (51%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P  I E + ++G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 229 FKDYPD-ILEEIRKQGFQKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHID 287

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++   S    P  L +APTRELA+Q+ +E+   Y+  G+      GG +   +   +  
Sbjct: 288 GQSTPRSERKGPNVLVMAPTRELALQIEKEV-GKYSYHGIKAVCVYGGGNRKEQINIVTK 346

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D ++ K L+++ +  ++LDEAD MLD+GF   I   L      R+ +
Sbjct: 347 GVQIVIATPGRLNDLVQAKVLDVTSVTYLILDEADRMLDMGFEPQIRKTLLDVRSDRQTV 406

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y K+ ++V + S +      +  R  L+   +++N + +  R  
Sbjct: 407 MTSATWPQGVRRLAQSYMKNPIQVFVGSLDLVAVHTVTQRVYLIDEEEKNNMMFDFFREM 466

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +A V      LA    +  ++ G+  Q +R  AL+ M+ G   + +AT
Sbjct: 467 GVNDKVIVFFGKKAMVDHVASDLAVAGIECQSIHGDRDQCDREQALEDMKTGNVHILLAT 526

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           DVA+RG+D+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A++   
Sbjct: 527 DVASRGLDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRKDWSHAQQLIN 586

Query: 359 LFREANVSVVWE 370
           +  EA+  V  E
Sbjct: 587 ILEEAHQEVPGE 598


>gi|161501867|ref|NP_762119.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
 gi|319999566|gb|AAO07109.2| ATP-dependent RNA helicase DbpA [Vibrio vulnificus CMCP6]
          Length = 459

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 203/372 (54%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L   
Sbjct: 9   SLKPELLSTLDTLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D +P +R+ L+
Sbjct: 123 AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDVAPTQRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I T+A    ++   V + S +++ +       L    +RDNA+  +L  H  
Sbjct: 183 FSATFPEQIETIASKVMQNPEMVKVESTHQKSTIEQRFYQLENTEERDNALEALLLTHRP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     
Sbjct: 303 ARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMG 362

Query: 365 VSVVWEPAPSVE 376
           + V     P  E
Sbjct: 363 IDVHPAKLPQPE 374



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
             +  +       +  G KQK  A  ++  L + +GI+ + IG I + P +++V +    
Sbjct: 375 NPKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLIGKINILPMVSYVAIDNSV 434

Query: 518 VDLLRRTVKLDK 529
             +  + ++  K
Sbjct: 435 AKIAEQQLQNGK 446


>gi|89074254|ref|ZP_01160744.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
 gi|89049958|gb|EAR55492.1| putative ATP-dependent RNA helicase, DEAD box family protein
           [Photobacterium sp. SKA34]
          Length = 427

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 195/387 (50%), Gaps = 17/387 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL++ GY   T VQ+  +   L+  DV+  AQTG+GKT AF L L   L+  
Sbjct: 7   NLHPNLLKALTDLGYSTPTDVQQQAIPLALKGDDVMAGAQTGTGKTAAFTLPLLQRLMTL 66

Query: 66  NDRF-----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             +               +   AL + PTRELA QV   +      T + VAV  GG S+
Sbjct: 67  PSQAEQVSTAVENNQKSRNKIRALILTPTRELAQQVFDSITTYAKYTEIKVAVAYGGTSM 126

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + + + L  GA I+V TPGRL DH+    +++S ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 127 NVQVKALNAGAEILVATPGRLLDHVFNGSVSLSEVETFVLDEADRMLDMGFIVDIQRIMK 186

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P +R+ L FSAT S  +  LA +   +   V +   N     ++     V    +   
Sbjct: 187 RMPAERQTLFFSATFSKQVKKLAFDILTNPKMVEVTPANTAAETVEQIVYPVDKHRKAEL 246

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++     +  +VF  T+    +  K L     +  +++G+ SQ  R  AL   + G+
Sbjct: 247 LAYLIGSRNWRQVLVFTKTKQGSDQLAKDLGLDGIKASSINGDKSQGARQRALDDFKSGK 306

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARG+D+  LE V++ ++    E+ +HR GRTGRAG  G ++ ++  + + 
Sbjct: 307 TRVLVATDVAARGLDIEQLEYVVNFDMPFKAEDYVHRIGRTGRAGMTGHAITLMSLDEEW 366

Query: 355 RAERLFREANVSVV------WEPAPSV 375
             + +    +  +       +EP P++
Sbjct: 367 ALKAIEELLDSRLPQQWLEGYEPNPAL 393


>gi|316965513|gb|EFV50216.1| ATP-dependent RNA helicase DHH1 [Trichinella spiralis]
          Length = 456

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 177/370 (47%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   L E+G+   + VQEA +   L  +D+L  A+ G+GKT A+ + L   
Sbjct: 73  FEDFCLKRELLMGLYEKGWEKPSPVQEASIPVALSGQDILARAKNGTGKTGAYSIPLLER 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E        +  AL I PTRELA+Q  +    L     + V V  GG S+  +  +L
Sbjct: 133 IDPE------LHSIQALIIVPTRELAMQTSQICIELSKHLKIKVMVTTGGTSLKDDIVNL 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+++ TPGR+ D +     N++  K +VLDEAD++L   F+  ++ ++   P+ R+
Sbjct: 187 SGTVHLIIATPGRILDLMDKNIANVNKCKMLVLDEADKLLSQDFKGILDKMISFLPEDRQ 246

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +    K + +    +N+  E             V    + + +  + R 
Sbjct: 247 IMLYSATFPITVEAFMKKHMRTPYEINLMDELTLLGV-TQYYAYVQEKQKVHCLNTLFRK 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++Q  R+      R G  R  + +
Sbjct: 306 LQINQSIIFCNSTQRVELLAKKITELGYSCYYIHSRMAQAHRNRVFHDFRMGYCRNLVCS 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +V++ +   N E  LHR GR+GR G  G+++ +I    +    R+ R
Sbjct: 366 DLLTRGIDIQAVNVVVNFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRMTLARIER 425

Query: 362 EANVSVVWEP 371
           E + ++   P
Sbjct: 426 ELSTTINPIP 435


>gi|157374029|ref|YP_001472629.1| ATP-dependent RNA helicase SrmB [Shewanella sediminis HAW-EB3]
 gi|157316403|gb|ABV35501.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 408

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 190/385 (49%), Gaps = 9/385 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++    ++ E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDLLLDPILLESLKAMGHHKPTTIQQQAIPLAMDQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RFS  +    L + PTRELA Q+ R    L ++      +  GGV    +   L
Sbjct: 63  LIDFPRRFSGQA--RILILTPTRELASQIHRYASHLASELDFNTVIITGGVPYGPQEDAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +++     N   ++ +V+DEAD MLD+GF   +E +   S  +++
Sbjct: 121 KGNVDILVATPGRLMEYLDKGQFNAEEVEMLVIDEADRMLDMGFSAAVETLAIESVGRKQ 180

Query: 182 MLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT   S       +           A  + +     +  +      + N + +IL
Sbjct: 181 TMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKDHKFNLLCSIL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR +V+    +L +       + G++ Q++R  AL     G   V +
Sbjct: 241 QQEETKRAIVFVKTREAVASLEGLLQKAGIPCSFMRGDMEQKQRFQALGRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   ++
Sbjct: 301 ATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R  +  +       ++ +R ++ +
Sbjct: 361 ERYMDQPLKRR---FIKDLRPKNKE 382


>gi|114773657|ref|ZP_01450692.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114546127|gb|EAU49044.1| Superfamily II DNA and RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 457

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 221/408 (54%), Gaps = 14/408 (3%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +N+   + +++ E GY +LT +Q A L   L+ +DVL  A+TGSGKT AFGL +
Sbjct: 1   MSDFAAQNLRPELLQSVEELGYTHLTDIQAATLPVVLKGEDVLAQAKTGSGKTAAFGLGI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
             +L       +  +   AL + PTRELA QV  +L  L      V +    GGV ++ +
Sbjct: 61  LQSLD------ATRTYTHALVLCPTRELADQVAEQLRLLARRMDNVKITTLYGGVPMNGQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++  HI+VGTPGR+ DH+    +++  L+  VLDEAD MLD+GF D++E I    P
Sbjct: 115 IATLKHRPHIIVGTPGRVMDHLMKHRVHLKELQQFVLDEADRMLDMGFYDELEVIFQHLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +KR+ L+FSAT    I  ++   QK   R+   S +      +  A  V    RD A+  
Sbjct: 175 QKRQTLLFSATYPDTIAQISDAVQKAPQRIETQSLHTGTKI-EQIAYKVTDEHRDQAVAA 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L ++ A+ AIVFC T+A     T+ L +     VAL+G+L Q+ER+  L       A V
Sbjct: 234 VLSHYQAQAAIVFCHTKAQTFALTEYLQQKDIAAVALNGDLEQRERTQVLTRFAHKSALV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +++VI+  ++  P+  +HR GRTGRA  +G++V ++ ++      
Sbjct: 294 LVATDVAARGLDIDAVDVVINYTVTEEPDVYVHRIGRTGRADAEGLAVTLVSESEMAGLR 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            +   A V +  +   SV       A RI+Q      SI G +++ + 
Sbjct: 354 AIEAHAQVVLKPKGIESV----RYHANRIVQPAFATLSIDGGKRQKLR 397



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%)

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
           +  S+  G +QK     ++  L + +GI+   IG I V   ++F+ V    V       +
Sbjct: 384 ATLSIDGGKRQKLRPGDILGALTKEAGIDGDDIGKINVTNQVSFIAVKLRSVKRAMAQFR 443

Query: 527 LDKGIQLKY 535
             K    K+
Sbjct: 444 EGKIKGKKF 452


>gi|297817434|ref|XP_002876600.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322438|gb|EFH52859.1| hypothetical protein ARALYDRAFT_486601 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 494

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 11/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + + + + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + +   
Sbjct: 122 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 181

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   N+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 182 IDPSNNVI------QAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRL 235

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 236 HQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQ 295

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSAT    +      + +    +N+  +             V    + + +  +   
Sbjct: 296 FLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 354

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 414

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 415 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 474

Query: 362 EANVSVVWEPAPS 374
           E    +  +P PS
Sbjct: 475 ELGTEI--KPIPS 485


>gi|145342427|ref|XP_001416184.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
 gi|144576409|gb|ABO94477.1| Ddx49-related DEAD box helicase superfamily II protein
           [Ostreococcus lucimarinus CCE9901]
          Length = 417

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 20/406 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +  V+   + + G+   +SVQ++ + P L+ +DV+  A TGSGKT AF L +
Sbjct: 1   MTSFDKLGLSGVLLRNIRQLGFTEPSSVQKSCIPPILQGRDVIGIANTGSGKTAAFALPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL ++PTRELA Q+  +         +   V IGG  + R+ 
Sbjct: 61  VHVLSVDPH------GVFALCLSPTRELAYQIAEQFAVFSVGMSLRCEVVIGGEDLLRQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             L    HIVV TPGRL +H             LK ++LDEAD +LD  F  ++ ++L +
Sbjct: 115 SSLSKRPHIVVATPGRLLEHFMHSSDTIECFQRLKFLILDEADRLLDSSFEAELRYLLTN 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+KR+ LMFSATI+P++  L     + A       E    +        +    +D  +
Sbjct: 175 LPQKRQTLMFSATITPSVIALKPLLGQRAFYYEEKGELTTPTGCAQYYCFMPEKVKDTYL 234

Query: 236 VNILRY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           V++LR      +  A++FC T       + +L        +L     Q++R + L   + 
Sbjct: 235 VHVLRELVSSKSTRAMIFCPTVQKCEMVSHMLHNLGIAACSLHAAKKQRDRHSTLNAFKS 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              ++ +ATDVAARG+DLPD+ELV++ ++ S+P   +HR GRT R    G ++ ++ Q  
Sbjct: 295 TMVKILVATDVAARGLDLPDVELVVNYDIPSDPRQYIHRIGRTARFHATGQAISLVTQYD 354

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
             + +++ +     +          ++E D  +++ +      +  
Sbjct: 355 VGKIKKIEKHLGHELEEF------HVQEADVNKLVGEVFASRKMAK 394


>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
 gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           bryantii B14]
          Length = 555

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 211/471 (44%), Gaps = 12/471 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+     + +AL +  + + T +QE  +   L   DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FENLDLNDNVLDALYDMRFDSCTPIQEKTIPEILNGHDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P  A   + ++PTRELA Q+ + ++        V ++ + G +        
Sbjct: 63  LD---DGGYPEGAINCVVMSPTRELAQQIDQAMQGFGYYLQGVSSIAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGRL  HI    +++S +   +LDEAD MLD+GF DDI+ I    P
Sbjct: 120 VKSLKLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFADDIKAIAKELP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + +MFSAT+   I  LAK   K+ + +   + ++    I   A +   + +   I +
Sbjct: 180 QTCQTIMFSATMPEKIEDLAKTLLKNPIEI-KLAVSKPAEKIKQSAYICYETQKLGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  IVFC ++  V +    L         +  +L+Q+ER++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQLDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ ++ +  Q   +
Sbjct: 299 LVATDIVSRGIDIDDITMVINYDVPHDTEDYVHRIGRTARADRDGVAITLVSEEDQFYFQ 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +  +     +     P  E + +    R    P   ++   + ++      +  D ++  
Sbjct: 359 QTEKFLEKEIQKNKLP--ENLGDGPEYRKQGKPNKNNNSAKNRRRKDRNQTSHKDKKQHC 416

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                        P+      +          +   +    S +  K    
Sbjct: 417 HQKNNDITERTSNPQNKRTNPMYRDHQYEGKKTNENRRNKKSSEANKNKVR 467


>gi|163800537|ref|ZP_02194438.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175980|gb|EDP60774.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 416

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 198/386 (51%), Gaps = 8/386 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + + LS    V  T VQE  +   L  KD+L +AQTG+GKT AFGL +  +
Sbjct: 5   FADLGIAQQLVDTLSGMNIVTPTPVQEKSIPHILEGKDLLAAAQTGTGKTAAFGLPIIQS 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +     +     AP AL + PTRELA QV   L    A T + +    GG S+  +++ L
Sbjct: 65  V----QQNKRDGAPKALILVPTRELAQQVMDNLIQYSANTNLNIVCVYGGTSIGVQKKKL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    + I+    +VLDEAD MLD+GF  D++ IL   P+ ++
Sbjct: 121 EEGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    I T+A       + V ++  N    ++      V    +   +  ++  
Sbjct: 181 TMLFSATFEERIKTIAYKLMDTPIEVEVSPANTTAENVKQMVYPVDKKRKRELLAYLIGS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   ++G+ R  IAT
Sbjct: 241 RNWQQVLVFTKTKQGSDELVKELKLDGIKAVSINGDKSQGARQRALDDFKEGKVRALIAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  LE V++ +L    E+ +HR GRTGRAG+ G++V ++  + +     +  
Sbjct: 301 DVAARGLDIQALEQVVNFDLPFKAEDYVHRIGRTGRAGKSGLAVSLMSHDEEYLLTAIEN 360

Query: 362 EANVSVVWEPAPSVEA--IRERDAQR 385
             +  +  E     E   I E + +R
Sbjct: 361 LLDKRLPQEWLEGFEPSLIEEVEPER 386


>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
 gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
          Length = 421

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 182/373 (48%), Gaps = 7/373 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L  
Sbjct: 2   IRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPA 61

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L      +  PA     L + PTRELA+Q+  +   L   T + +    GGV     
Sbjct: 62  LQYLQDFPRKKAGPARM---LILTPTRELAMQITDQARELAKYTALNIFTITGGVMYQEH 118

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +     
Sbjct: 119 ADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPVVDRLSAECR 178

Query: 178 KKRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +++ L+FSAT     +    ++   +   ++  S  R+   I         ++    ++
Sbjct: 179 WRKQTLLFSATLEGKGVEGFTEDLLNNPAEIDAKSSLRERKKITQWYHRADTAEHKLDLL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A+ +IVF  TR  +     +L         + GE+ Q  R+NA+   RDG   
Sbjct: 239 KHIITKEAERSIVFLKTRERLGDLRALLESAQIPCAWIQGEMPQDRRNNAIARFRDGTVN 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   
Sbjct: 299 VLLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQLMI 358

Query: 357 ERLFREANVSVVW 369
           ER+ R    ++  
Sbjct: 359 ERVARYTKEAIKE 371


>gi|326801270|ref|YP_004319089.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
 gi|326552034|gb|ADZ80419.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
          Length = 442

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 192/415 (46%), Gaps = 23/415 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE+    + I  A+++  Y   T++Q+  + P L  +DV+  AQTG+GKT A+ L + 
Sbjct: 3   KSFEDFKFNRQILNAIADAEYKEPTAIQQKAITPILAGQDVMGIAQTGTGKTAAYVLPII 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++  S P AL ++PTRELA+Q+   ++     T +   V  GG+   ++  
Sbjct: 63  MKL-----KYAQGSDPRALILSPTRELAMQIEENIQLFAKYTDLRTVVLYGGLGPKQQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGR  D    + +N   +K +V+DEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 ALEKGVDILVATPGRFLDLYLAEHINTKQIKLLVMDEADKMMDMGFIGKIHRILEVIPRK 177

Query: 180 RRMLMFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT+S               +          ++       +     + N +  +
Sbjct: 178 RQNLLFSATMSELVHKIAGDFLAFPTIVEVSPQATPANTVSQQLYFVPNTKTKINLLQYL 237

Query: 239 LRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGRA 295
           L+     +  I+F  T+         L+    +        ++ + +        ++G  
Sbjct: 238 LKNDEDFHRLIIFSKTKTIADNIYHFLSRKYGEDEVRVIHANKGQNTRINSINAFKEGSV 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDVAARG+D+ D+  VI+ ++    E+ +HR GRTGRA + G+++ +        
Sbjct: 298 RILVATDVAARGLDVSDVSHVINFDIPIVIEDYVHRIGRTGRATKSGIAISMCTPAEAYY 357

Query: 356 AERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDPLFLDSIQG 398
             ++ +     +     P+   I            RE D Q+  ++P F  +   
Sbjct: 358 ITKIEKLIRQQIPVSELPAEVLIEKTPFEEKQAQAREIDMQKRKENPEFKGAFHE 412


>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
 gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
          Length = 399

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 2/365 (0%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            EAL  +GY + + +Q   +   +  +DV+ +AQTG+GKT  F L +   L     + + 
Sbjct: 1   MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRH--GKRAG 58

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +   AL + PTRELA QV   ++       +   V  GGV  + +   L+ G  ++V T
Sbjct: 59  RAQIRALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVAT 118

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  +   L    L+ +VLDEAD MLD+GF  DI  ++   P KR+ L+FSAT S 
Sbjct: 119 PGRLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSA 178

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA     D V + +  EN+    ++       ++ + + + +++R    +  +VF 
Sbjct: 179 PIRKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRTGEWRQVLVFS 238

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +R    L +      A+ G  SQ  R+ ALQ  + G  RV +ATD+AARGID+ 
Sbjct: 239 RTKHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQ 298

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L  V++ +L +  E+ +HR GRTGRAG  G +V ++        + + R     +  + 
Sbjct: 299 QLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERLTGEELTRQT 358

Query: 372 APSVE 376
               E
Sbjct: 359 VDGFE 363


>gi|90075448|dbj|BAE87404.1| unnamed protein product [Macaca fascicularis]
          Length = 566

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|270016295|gb|EFA12741.1| Rm62 [Tribolium castaneum]
          Length = 776

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 190/377 (50%), Gaps = 12/377 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P  +   + ++GY   T++Q       +  KD++  AQTGSGKT+A+ L  
Sbjct: 126 IQNFEEACFPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPA 185

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +    +    P+AL +APTRELA Q+ +      + + V      GG     + 
Sbjct: 186 IVHINNQ-PSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQA 244

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 245 RDLERGVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 304

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA+++ ++ V++NI S     + +I     +    +++     
Sbjct: 305 DRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNN 364

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R+
Sbjct: 365 LLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRN 424

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + IATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+   G S      + 
Sbjct: 425 GKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSN 484

Query: 353 QRRAERL---FREANVS 366
            R+A+ L    +EAN +
Sbjct: 485 FRQAKDLVSVLKEANQN 501


>gi|91228876|ref|ZP_01262779.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91187564|gb|EAS73893.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 419

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 126/420 (30%), Positives = 207/420 (49%), Gaps = 19/420 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E L     V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T
Sbjct: 5   FADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQT 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L
Sbjct: 65  VQQKKLNGT----PQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P +++
Sbjct: 121 EEGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    I T+A    +  V V ++  N     +      V    +   +  ++  
Sbjct: 181 ILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGS 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 241 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +   + +  
Sbjct: 301 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAIEN 360

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +  +  E     E             P  ++ ++ ++           +  K+ A   
Sbjct: 361 LLDQRLPQEWLAGFE-------------PSLVEEVEPEQNGGGRRRSRSSEKRKLKAKLA 407


>gi|330846058|ref|XP_003294872.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
 gi|325074579|gb|EGC28605.1| hypothetical protein DICPUDRAFT_93301 [Dictyostelium purpureum]
          Length = 413

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 177/371 (47%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + +   + E+GYV  + +QE  +   L  +D++  A+ G+GKT +F +     
Sbjct: 41  FDDLHLKRDLLRGIFEKGYVRPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEK 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D          L + PTRELA+Q  +  + L     V V    GG S+  +   L
Sbjct: 101 TDPTKDVI------QVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRL 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+V TPGR+ D  +    N+S+ + +++DEAD++L   F+  +E +++  P +R+
Sbjct: 155 YSPVHILVATPGRVLDLAQKNVANLSNCQTMIMDEADKLLSQEFQPLVEQLINFLPPQRQ 214

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    + +  + Y + A  +N+  E             V    + + +  +   
Sbjct: 215 ILLFSATFPVTVKSFKEQYLQQAFEINLMEELTLKGV-TQYYAFVEERQKIHCLNTLFSK 273

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 274 LQINQSIIFCNSVNRVELLAKKITELGYSCFFIHAKMVQAHRNRVFHDFRNGACRNLVSS 333

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+ D+ +VI+ +   + E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 334 DLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFGHLGLAINLITYEDRFSLYKIEQ 393

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 394 ELGTEIKPIPP 404


>gi|332856302|ref|ZP_08436187.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
 gi|332727108|gb|EGJ58577.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013150]
          Length = 475

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 206/474 (43%), Gaps = 13/474 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                  F R        P           R  F  + R  +     R   +G 
Sbjct: 423 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGG 472


>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
 gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Alteromonadales bacterium TW-7]
          Length = 433

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/401 (32%), Positives = 202/401 (50%), Gaps = 4/401 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+  +   S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLIESD--LSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++++K +VLDEAD MLD+GF  D++ ++ S    R
Sbjct: 120 LKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +     K L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG +G ++  + +  +     + 
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFEIE 359

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDE 400
                 +        E + RE    +I + P  L   + ++
Sbjct: 360 ALIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNK 400


>gi|115447545|ref|NP_001047552.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|49388094|dbj|BAD25227.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113537083|dbj|BAF09466.1| Os02g0641800 [Oryza sativa Japonica Group]
 gi|218191254|gb|EEC73681.1| hypothetical protein OsI_08237 [Oryza sativa Indica Group]
          Length = 483

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 169/377 (44%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 111 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 170

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 171 IDQEK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +++DEAD++L   F+  +E ++   P  R+
Sbjct: 225 YQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQ 284

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 285 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 343

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 344 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 403

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 404 DLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 463

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 464 ELGTEIKPIPPQIDQAI 480


>gi|281424310|ref|ZP_06255223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
 gi|281401579|gb|EFB32410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella oris
           F0302]
          Length = 544

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   
Sbjct: 9   ELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKLD-- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P +A   L ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 67  -DGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSL 125

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA IV+ TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  +
Sbjct: 126 QLGADIVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQNCQ 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK       +V   + ++    I   A +   + +   I +I + 
Sbjct: 186 TIMFSATMPDKIEDLAKTL-LKNPKVIKLAVSKPAEKIKQSAYVCYETQKMGIIKDIFKN 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+FC ++  V +    L         +  +L Q  R + +   + G+  V +AT
Sbjct: 245 GDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + ++     +++ +
Sbjct: 305 DIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYYFQQIEK 364

Query: 362 EANVSVVWEPAP 373
                V   P P
Sbjct: 365 FLEKEVEKTPLP 376


>gi|299140955|ref|ZP_07034093.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
 gi|298577921|gb|EFI49789.1| ATP-dependent RNA helicase DeaD [Prevotella oris C735]
          Length = 542

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 184/372 (49%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   ELNDNVLDALYDMRFEKCTPVQENCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P +A   L ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 65  -DGGYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +V+ TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  +
Sbjct: 124 QLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIIKIAKKLPQTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LA        +V   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPDKIEDLA-KTLLKNPKVIKLAVSKPAEKIKQSAYVCYETQKMGIIKDIFKN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+FC ++  V +    L         +  +L Q  R + +   + G+  V +AT
Sbjct: 243 GDLERVIIFCGSKLKVKQVAGALQRKHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  + ++     +++ +
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSEDDIYYFQQIEK 362

Query: 362 EANVSVVWEPAP 373
                V   P P
Sbjct: 363 FLEKEVEKTPLP 374


>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase domain-containing protein [Methylovorus sp.
           SIP3-4]
 gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
           MP688]
 gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. SIP3-4]
 gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
          Length = 459

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 129/368 (35%), Positives = 200/368 (54%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I +AL E GY   T +Q   +   L+  D++  AQTG+GKT AF L L   LL + 
Sbjct: 13  LAPEILKALEEFGYTVPTPIQAQAIPVVLQGHDLMAGAQTGTGKTAAFSLPLLQKLLPQA 72

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L  G
Sbjct: 73  SSSASPARHPVRALILTPTRELAIQVEESVKVYAKHTALRSLVVFGGVDIKTQTPSLMKG 132

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH+  + + +  ++ ++LDEAD MLD+GF  D++ IL   PKKR+ LM
Sbjct: 133 VEILVATPGRLLDHVEQRTVQLGQVQMLILDEADRMLDMGFMPDLKRILALLPKKRQNLM 192

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  L++ +  +   + +A  N     +  +   +    +D+ +  +L    +
Sbjct: 193 FSATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQLDKDSKDSFLAKLLLESNS 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  T+ + SR  + L        A+ G+ SQQER  AL+  + G+    +ATDVA
Sbjct: 253 EQTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKVTTLVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ EL S PE+ +HR GRTGRAG  G ++ ++    ++  + + +   
Sbjct: 313 ARGLDIDQLPMVINFELPSAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYLKEIEKLIK 372

Query: 365 VSVVWEPA 372
             +  E A
Sbjct: 373 REIPRETA 380


>gi|255530101|ref|YP_003090473.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255343085|gb|ACU02411.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 418

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/392 (30%), Positives = 199/392 (50%), Gaps = 15/392 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    + E L   G+ N T +Q+  +   L +KD++  AQTG+GKT A+ L + +
Sbjct: 3   FKDF-NFNPELLEGLLAMGFRNATPIQQQAIPLILNKKDLIACAQTGTGKTGAYLLPIMN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRE 117
            ++   +R +       L +APTRELA Q+  ++E L   T +          G++  ++
Sbjct: 62  MIVETENRHNNT-----LILAPTRELAQQIDLQVEALSYFTNISSLTVYGGGDGIAYEQQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R ++ G  +++ TPGRL  H+    L +  L+ +VLDEAD MLD+GF DDI  I+   P
Sbjct: 117 KRSMREGVDLIIATPGRLISHLSSGVLKLDQLQHLVLDEADRMLDMGFYDDIMRIVSYLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ +MFSAT+ P I  LA    K   ++NIA        +     +     +   + +
Sbjct: 177 QVRQTVMFSATMPPKIRKLAATLLKHPEQINIALSKPAEGILQQIYFVH-DEQKVPLLTD 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    K+ I+F ST+  V    KV      +  A   +L Q ER + L   ++ +  +
Sbjct: 236 VLKTGEYKSIIIFASTKEKVKNLGKVFRTLGLKAEAFHSDLGQSERESILLKFKNKQLPI 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV +RGID+  ++LV++ ++  + E+ +HR GRT RA  KG ++ ++    +R+  
Sbjct: 296 LIGTDVLSRGIDVEGIDLVVNFDVPHDAEDYVHRIGRTARAATKGTAITLVNSRDKRKLV 355

Query: 358 RLFREANVSVVWEPAPS-----VEAIRERDAQ 384
            + +     +   P P       EA  ER A+
Sbjct: 356 SIEKLIEKEIDRIPLPEHLVAIPEATTERHAK 387


>gi|221307593|ref|NP_001138306.1| probable ATP-dependent RNA helicase DDX5 [Pan troglodytes]
 gi|156630859|sp|A5A6J2|DDX5_PANTR RecName: Full=Probable ATP-dependent RNA helicase DDX5; AltName:
           Full=DEAD box protein 5
 gi|146741418|dbj|BAF62365.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Pan troglodytes verus]
          Length = 614

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 185/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
              + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 ENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus sp.
           RS-1]
 gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
          Length = 467

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 19/470 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I   + + GY   T +QE ++   L  +DV+  AQTG+GKT AF L +   L+   
Sbjct: 8   FHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQRLMR-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     A+ + PTRELA Q+   +E L   TG+      GGV    + + L+ G  
Sbjct: 66  ---GPRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRRGVE 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V  PGRL DH+    L + HL  ++LDEAD+M D+GF  D+  IL  +P +R+ ++FS
Sbjct: 123 IAVVCPGRLLDHLERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  LA+   ++   + I       +   +    VA   +   ++ +LR+    +
Sbjct: 183 ATMPDAIRALAREALREPQTIQIGRSAPVSTV-THAIYPVAEHLKTALLIELLRHTDTGS 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+      +  LA   ++  AL G +SQ  R  AL   R GR ++ +ATD+AAR
Sbjct: 242 VLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ ++    E   HR GRTGRA R G +  ++ ++       + R     
Sbjct: 302 GIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERLIGEP 361

Query: 367 VVWEPAPSVE--------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +  E  P  +          R   A R    P   +    DE+        +HD ++  +
Sbjct: 362 LKRETVPGFDYHAAAPAHDARSDHAPRHHAMPRHYEPHSQDERDNRAP--RRHDAQERRS 419

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                        E  +  +    + R RD S        S     G   
Sbjct: 420 ---DTAPRRRDVQEWRSDAAPNRHKPRSRDTSARSTRADRSDRTVSGRRR 466


>gi|62857341|ref|NP_001016823.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|89273979|emb|CAJ82187.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Xenopus (Silurana)
           tropicalis]
 gi|163916608|gb|AAI57773.1| hypothetical protein LOC549577 [Xenopus (Silurana) tropicalis]
          Length = 647

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 181/380 (47%), Gaps = 14/380 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N  + +   +++ GYV LT VQ+  +   L  +D++  AQTGSGKT AF L + S
Sbjct: 222 TFEEANFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILS 281

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ E     +F P   P A+ IAPTREL  Q+  +       T V   V  GG+     
Sbjct: 282 HMMNEGITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHA 341

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RD++ G +I+  TPGRL D I  + + +S LK +VLDEAD MLD+GF   +E ++ S  
Sbjct: 342 MRDVERGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPG 401

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDRD 232
              +    +   S       +      ++ +             SD++   + +    + 
Sbjct: 402 MPAKEERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKR 461

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + +V IL+  G +  ++F +T+         L +  F   ++ G+  Q +R  A++  R 
Sbjct: 462 DKLVEILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRS 521

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G +      N 
Sbjct: 522 GKCPVIVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSFFNVNE 581

Query: 353 QRRAER----LFREANVSVV 368
                R    +  +A+  V 
Sbjct: 582 DHVVARPLVKILTDAHQEVP 601


>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 458

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/481 (25%), Positives = 213/481 (44%), Gaps = 33/481 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     +  A+ E GY   T++Q   +   L  +D++  AQTG+GKT +F L +
Sbjct: 1   MK-FADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPM 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + 
Sbjct: 60  IDILAHGRAR---ALMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLIGGVQMGDQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +++ TPGRL D      + ++    +V+DEAD MLD+GF  DIE I    P 
Sbjct: 117 KALEKGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRMLDMGFIPDIENICTKLPA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I  LA  +  +   + +A    ++ +I+   V  +   + + +  +
Sbjct: 177 NRQTLLFSATMPPPIKKLADKFLSNPKTIEVARPASRNENIEQFVVKTSERGKRDTLRGL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ + +V    K L    ++   + G++ Q  R   L   + G   + 
Sbjct: 237 IEAEDLSTAIVFCNRKTTVRELAKSLQRSGYRAGEIHGDMDQSSRIAELDRFKAGTINIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+DVAARG+D+  +  V + +   +P++ +HR GRTGRAG +G +  ++  +     + 
Sbjct: 297 VASDVAARGLDVKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAQGRAFTLVTPSDDEAIDN 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +    ++      + +A   +D  R  ++P          +                 
Sbjct: 357 IQKLTGYNIPVHGTATADAAPAKDEPREEREPRRESRPARGGR----------------- 399

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-----FSLSV 473
                 RA    P+        +   R +D  R         D+     W       LSV
Sbjct: 400 -----GRAKPADPDAKRADDKRNEAPRKKDAGRKPPPAARQDDDGSDDGWNGPMPGFLSV 454

Query: 474 G 474
           G
Sbjct: 455 G 455


>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 433

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 201/401 (50%), Gaps = 4/401 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPELI-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   +   S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLFESDS--STTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF +D++ ++ S   +R
Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +       L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG +G ++  + +  +     + 
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFEIE 359

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDE 400
                 +        E + RE    +I + P  L   + ++
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRANK 400


>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum 'So ce 56']
 gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 812

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 143/468 (30%), Positives = 227/468 (48%), Gaps = 11/468 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +P    + E L+E GYV+ T VQ A+  P  R +D +V A+TG+GKT AFGL +  
Sbjct: 29  TFDVLPLSSELRETLAEIGYVHPTPVQLAVWEPVTRGRDAVVQARTGTGKTAAFGLPIVD 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  +   +       LA+ PTRELA+QV  E+E L  + G+ V    GG  + R+   
Sbjct: 89  HAVKRSLAQA-----QVLALCPTRELALQVSAEVERLGKRKGIKVVAVYGGAPMQRQIDA 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA ++VGTPGR+ DH+R   +   H++ +VLDE DEML +GF  ++  IL   P +R
Sbjct: 144 LAAGAQVIVGTPGRVLDHLRRGTIVAKHIRLLVLDECDEMLSMGFERELTAILAELPPER 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  +A++    +      S +   +      V +   D+  ++V I+ 
Sbjct: 204 QTLLFSATLPPDIERIARSK-LRSPEFITLSGDAVGALQIQHYVYLITGDKLTSLVRIIE 262

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +NA++FC+T+         L    +    L+G+L Q +R   +   R+GR R  +A
Sbjct: 263 VENPENAVIFCNTKDETEAVAGALKRQGYDADWLNGDLPQSDREKVMSATREGRLRFLVA 322

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  L  VI+ +   + E  +HR+GRTGRAGR G ++ +I          L 
Sbjct: 323 TDVAARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDVGPLYILR 382

Query: 361 REANVSVVWEPAPSVEAIR---ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
               +  + +  PS   ++   E D   +L +         D+  +   LL     E I 
Sbjct: 383 LTYKIRPLEKQLPSEGELKTRAEADLVAMLAEAFLSKGTHRDDLSLARRLLTHDQAEAIV 442

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           AG LR H       +E    +  + + +      +   G       + 
Sbjct: 443 AGLLRDHLGARPTAQEEASAARRAQQPQRAAARESEGRGTDPSTKPEP 490



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 448 DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPD 507
           +   A +      +         +++G +  A A      L    G+ +  I  IRV+  
Sbjct: 706 EAGEAPRAEPSRDEADGEFVEVFINLGRRDGARAADFQRALIERGGMAKGDIRRIRVRER 765

Query: 508 LTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFR 544
             FV V    +  +  T+     I  K    E+   R
Sbjct: 766 NAFVSVPKAELARVVATLN-GATIAGKEARAEQARER 801


>gi|262403377|ref|ZP_06079937.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
 gi|262350876|gb|EEZ00010.1| ATP-dependent RNA helicase RhlE [Vibrio sp. RC586]
          Length = 464

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 121/355 (34%), Positives = 183/355 (51%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE-LLAKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A+   AL + PTRELA Q+   +        +  AV  GGV V+ + + +  GA 
Sbjct: 67  PKV-RANKVRALILTPTRELAAQIQDNVLIYGRHLPLSSAVVFGGVKVNPQMQRMCKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + V ++++  N     ++       +  +   +V + +    + 
Sbjct: 186 ATFSAEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPAMLVKLAKEGNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L E      A+ G  SQ  R+ AL   + G  R+ +ATD+AAR
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360


>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 434

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/363 (32%), Positives = 186/363 (51%), Gaps = 3/363 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +A+ E+GY   T +QE  +   L  +D L  AQTG+GKT AF + +   L   
Sbjct: 7   NLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPILQNLSKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL + PTRELA+Q+   +        +   V  GGV    +   L+ G 
Sbjct: 67  KI---PNKHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALKKGV 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    +++ +L+  VLDEAD MLD+GF  D++ ++   P++R+ L F
Sbjct: 124 DILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQTLFF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA +   + V+V +   +     I      V   ++ N + +IL+   + 
Sbjct: 184 SATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVEKDNKLNLLSHILKNDISD 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    + ++ L +      A+ G  SQ  R NAL   + G+ RV +ATD+AA
Sbjct: 244 SVLVFARTKHGADKISRKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATDIAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ +L+ VI+ ELS   E  +HR GRTGRAG +G S+  +        +   +    
Sbjct: 304 RGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKLIGK 363

Query: 366 SVV 368
            + 
Sbjct: 364 KIP 366


>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
 gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
          Length = 444

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 179/377 (47%), Gaps = 6/377 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREANVSVVWEPAPSVE 376
            R     +      S+E
Sbjct: 364 KRYTEEILKARILASLE 380


>gi|95930488|ref|ZP_01313224.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133528|gb|EAT15191.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 433

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 199/374 (53%), Gaps = 6/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+++ + + + G+  LT VQE  +   L  +D+   AQTG+GKT AF +AL + LL  
Sbjct: 7   NLPELVQQGVVQLGFSELTPVQEQAIPLALNGRDIAAQAQTGTGKTAAFLIALYTRLLNN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P AL +APTREL VQ+  + + L   + + +    GGV   R+R+    G 
Sbjct: 67  PQPTSEN--PRALIMAPTRELVVQICEDAKGLVPDSPLTIHPVYGGVDYDRQRQAFGKGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D+ + K  +   ++ +V+DEAD M D+GF  D+ FIL   P   +    
Sbjct: 125 DIVVATPGRLIDYAKQKVFSFKRIEVLVIDEADRMFDMGFISDLRFILRRLPSYDKRQTM 184

Query: 186 --SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
             SAT+SP +  LA ++  +A +V I  E      ++     V   ++   ++ +     
Sbjct: 185 LFSATLSPRVMELAYDFMNEAEKVQIEPEQVTAERVEQIVYHVGAKEKIPLLLGLLNGRM 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF +T+      T+VL  +  +   +SG++SQ +R   L   ++G+ +V +ATD
Sbjct: 245 ADGRVMVFANTKRDTDYVTRVLQANDVKAAQISGDISQVKRMRILSEFKEGKVQVLVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RGI + D+  V++ ++  +PE+ +HR GRT RAG  G+++ +  +++      +   
Sbjct: 305 VASRGIHIEDVTHVVNYDVPQDPEDYVHRIGRTARAGASGLAIMMADEDLVYHLPAIEEY 364

Query: 363 ANVSVVWEPAPSVE 376
            + S+  E  P+ E
Sbjct: 365 ISSSIPSE-VPAEE 377


>gi|317401375|gb|EFV82010.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 591

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 148/582 (25%), Positives = 244/582 (41%), Gaps = 60/582 (10%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     +  AL + G+   T+VQ + +   L   D++VS+QTGSGKT AF L    
Sbjct: 2   SFENLGLAPALLSALQDAGFTTPTTVQASAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +       +       L +APTRELA+QV         K      A  +GG+    + +
Sbjct: 62  RI--AQMPANKGVGVQVLVLAPTRELALQVTDATATYGRKLADLRTATVVGGMPYGAQLK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH+    + ++ +  +VLDEAD MLD+GF +DIE I+   P +
Sbjct: 120 ALSRRVDVLVATPGRLIDHLNSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIISRLPVE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           R+ L+FSAT+   +  LA    +D  R+ +A    +H++I    +     S +   + ++
Sbjct: 180 RQTLLFSATLDGTVAKLAARMMRDPQRIEVAGAKEKHTNITQSLLYADDASHKMQLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF ST+         LA+  F   AL G+++Q++R+  L  ++ G+ R+ 
Sbjct: 240 LRDASLDQAIVFTSTKRGADDLADHLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R
Sbjct: 300 VATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSERHKVRR 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +      S+  E    +E    +   R    P    + +G +                  
Sbjct: 360 IEHYIGQSITPEVIAGLE---PKRTPR----PSTGGAPRGGK------------------ 394

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                                   RD    + R+F    G     +G    +   G  Q 
Sbjct: 395 --------PFGKRPGGFGGGYQGHRDGGSREGRSFGGPRGEFKPREGGYQGAREGGGYQG 446

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-DGVDLLRRTVKLDKGIQLKYLG 537
                             +S G        +F +    +G     R        +  + G
Sbjct: 447 NRPF---------GDRPARSFG-----DRPSFGDRPQREGGYQGNRPFGDRPQREGGFRG 492

Query: 538 GE---KPDFRGYKSSGFKSKNSQDGATKRFKR---FKGASKN 573
           G+   +P F    S G + +       +R  R   F+G  ++
Sbjct: 493 GDRDSRPSFSDRPSFGDRPQRDPRPFNERGPREGGFRGGDRD 534


>gi|294877852|ref|XP_002768159.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239870356|gb|EER00877.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   + + G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L    T+    
Sbjct: 29  LKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVK--- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L ++PTRELA Q  +    L     V V  C+GG  +  + R L+ G H
Sbjct: 86  ---TTERDPQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVH 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+   I  + L+  HLK +VLDEADEMLD GF++ +  I    P   + ++ S
Sbjct: 143 IVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +  N+  +  RV +  +      I    V +     + + + ++       
Sbjct: 203 ATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTLTIT 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T  + E  F VV++ G++ Q+ER   +Q  R G+ARV I TD+  
Sbjct: 263 QAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWG 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  + ++  R    + +  + 
Sbjct: 323 RGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRDIEQYYST 382

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 383 QIDEMPMNVADLI 395


>gi|224284362|gb|ACN39916.1| unknown [Picea sitchensis]
          Length = 593

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 183/367 (49%), Gaps = 6/367 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L   G+   T++Q       L+ +D++  A+TGSGKT+A+ L     + A+   
Sbjct: 179 DHVLRELERAGFSEPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQ-PH 237

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +    P+ L +APTRELAVQ+ +E       + +      GG     + RDLQ G  IV
Sbjct: 238 LAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIV 297

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I+      R+ L +SAT
Sbjct: 298 IATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQIRPDRQTLYWSAT 357

Query: 189 ISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KN 246
               +  LA+ +  +  +V I S + + +  I     +V+  ++   ++ +L        
Sbjct: 358 WPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLLEEIMDGSR 417

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    + TK L    +  +++ G+ SQ ER   L   + G++ +  ATDVAAR
Sbjct: 418 ILIFMETKKGCDQVTKQLRMDGWPALSIHGDKSQAERDWVLGEFKAGKSPIMTATDVAAR 477

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREA 363
           G+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A     + +EA
Sbjct: 478 GLDVKDIKCVINYDFPGSLEDYVHRIGRTGRAGAKGTAYSFFTAANGRFARELVGILQEA 537

Query: 364 NVSVVWE 370
              V  E
Sbjct: 538 GQRVNPE 544


>gi|196014693|ref|XP_002117205.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
 gi|190580170|gb|EDV20255.1| DEAD box ATP-dependent RNA helicase [Trichoplax adhaerens]
          Length = 401

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   + + +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT  F +++
Sbjct: 27  IRSFDQMGLKEDLVRGIYAYGFEKPSAIQQRSIKPIIEGRDVIAQAQSGTGKTATFSISV 86

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +           AL ++PTRELAVQ+ + +  L     V    CIGG +V  + 
Sbjct: 87  LQAIDTQ------LRETQALIMSPTRELAVQIQKVILALGDYMNVQCHACIGGTNVGEDI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G HIV G+PGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P 
Sbjct: 141 RKLDYGQHIVSGSPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNQGFKEQIYDVYRYLPP 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  + + +  + +R+ +  +      I    V +     + + + +
Sbjct: 201 STQVVLLSATLPHDILEMTRKFMTEPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G +RV
Sbjct: 261 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 321 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILR 380

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 381 DIEQYYSTQIDEMPM 395


>gi|321399692|emb|CAJ06994.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 592

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 193/379 (50%), Gaps = 10/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 144 MLEFSDLVAPDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPA 203

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 204 ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQ 262

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 263 QRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 322

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 323 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKME 382

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 383 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 442

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            + +ATDVAARG+D+ DL++V++ ++  N E+ +HR GRTGRAG+ G +   +       
Sbjct: 443 AILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFVSSADNSK 502

Query: 353 -QRRAERLFREANVSVVWE 370
             R    L   A   V  E
Sbjct: 503 TIRDLIDLLLRAKQEVSPE 521


>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
 gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
           DSM 15606]
          Length = 542

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 121/459 (26%), Positives = 203/459 (44%), Gaps = 15/459 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   + +AL +  +   T VQE  +   L   DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   ELNNSVLDALYDMRFEKCTPVQEKCIPEILNGNDVLGVAQTGTGKTAAYLLPILSKLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P  A   L ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 65  -DGNYPEKAINCLIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +V+ TPGRL  HI    +++S +   +LDEAD MLD+GF DDI  I    P+  +
Sbjct: 124 QLGADVVIATPGRLISHISLGNVDLSKVSFFILDEADRMLDMGFSDDILKIAKKLPQSCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK       +V   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPDKIEELAKTL-LKNPKVIKLAVSKPAEKIKQSAYVCYETQKMGIIKDIFKS 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+FC ++  V +    L         +  +L Q  R   +   + G+  V +AT
Sbjct: 243 DDLKRVIIFCGSKMKVKQVAGALQRKHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R+G ++  +  +     + + +
Sbjct: 303 DIVARGIDIDDISMVINYDVPHDAEDYVHRIGRTARAAREGSAITFVSDDDIYYFQLIEK 362

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                V   P P  E + E    +    P    S +   +   +    K   ++      
Sbjct: 363 FLGKQVDKTPLP--EGLGEGPEYKSAGKPKRGTSAKSRRRINREQTAHKDKKQQ-----N 415

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           R  R  +   +           +    +S+  +   G +
Sbjct: 416 RRQRNNVADSQSQNTEVAKDSHNNKERNSQRNRNQRGEK 454


>gi|282158103|ref|NP_001164095.1| ATP-dependent RNA helicase p62 [Tribolium castaneum]
          Length = 549

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 191/378 (50%), Gaps = 12/378 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P  +   + ++GY   T++Q       +  KD++  AQTGSGKT+A+ L  
Sbjct: 112 IQNFEEACFPDYVQHEIQKQGYDTPTAIQAQGWPIAMSGKDLVGIAQTGSGKTLAYILPA 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +    +    P+AL +APTRELA Q+ +      + + V      GG     + 
Sbjct: 172 IVHINNQ-PSIARGDGPIALVLAPTRELAQQIQQVAHDFGSSSYVRNTCIFGGAPKGPQA 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 231 RDLERGVEICIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LM+SAT    +  LA+++ ++ V++NI S     + +I     +    +++     
Sbjct: 291 DRQTLMWSATWPKEVRKLAQDFLRNYVQINIGSLQLSANHNILQIVDVCQEHEKETKLNN 350

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+  V   T+ +  + +  V + G+ SQQER   L+  R+
Sbjct: 351 LLQEIGNNGEPGAKIIIFVETKKKVESITRTIRRYGWPAVCMHGDKSQQERDFVLREFRN 410

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + IATDVAARG+D+  ++ VI+ +  ++ E+ +HR GRTGR+   G S      + 
Sbjct: 411 GKSSILIATDVAARGLDVEGIKYVINYDYPNSSEDYIHRIGRTGRSDTTGTSYAFFTPSN 470

Query: 353 QRRAERL---FREANVSV 367
            R+A+ L    +EAN ++
Sbjct: 471 FRQAKDLVSVLKEANQAI 488


>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 493

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 192/381 (50%), Gaps = 10/381 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + EA  + GY   T +Q   +   L+ +D++  A+TGSGKT +F L + 
Sbjct: 71  KTFKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPIL 130

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+    E L A   V     +GG+ +  +  
Sbjct: 131 QALMEKPQSF------FGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSI 184

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 185 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPR 244

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    +  RV+I+S      +      +L     +D  +V 
Sbjct: 245 ERRTFLFSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYLLRPYKHKDIYLVY 304

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R   +L    F  + L G++SQ  R  AL   R     +
Sbjct: 305 LLHEFIGQSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREI 364

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++ V++ +L ++ +  +HR GRT RAG+ G ++  + Q      +
Sbjct: 365 LVATDVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDVEIWQ 424

Query: 358 RLFREANVSVVWEPAPSVEAI 378
           R+       +   PAP  EA+
Sbjct: 425 RIEAAMGKELAEYPAPKDEAM 445


>gi|143456931|sp|Q6H7S2|RH8_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 8
 gi|49388093|dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|215701408|dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222623328|gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japonica Group]
          Length = 508

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 169/377 (44%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 136 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 196 IDQEK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRL 249

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +++DEAD++L   F+  +E ++   P  R+
Sbjct: 250 YQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPASRQ 309

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 310 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 368

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 369 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 428

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 429 DLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 488

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 489 ELGTEIKPIPPQIDQAI 505


>gi|115459616|ref|NP_001053408.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|75327302|sp|Q7XMK8|RH6_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|32489827|emb|CAE04571.1| OSJNBb0039L24.10 [Oryza sativa Japonica Group]
 gi|113564979|dbj|BAF15322.1| Os04g0533000 [Oryza sativa Japonica Group]
 gi|125591093|gb|EAZ31443.1| hypothetical protein OsJ_15580 [Oryza sativa Japonica Group]
 gi|215701173|dbj|BAG92597.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 498

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 185

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 186 IDQDK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 239

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     + +   +V+DEAD++L   F+  I+ ++   P  R+
Sbjct: 240 YQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQ 299

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 300 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 358

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 359 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 419 DLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 478

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P     AI
Sbjct: 479 ELGTEIKPIPPQIDRAI 495


>gi|219888343|gb|ACL54546.1| unknown [Zea mays]
          Length = 525

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 171/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 153 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 212

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 213 IDQEK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 266

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     ++    +++DEAD++L   F+  IE ++   P  R+
Sbjct: 267 YQPVHLLVGTPGRILDLTKKGVCILNDCSMLIMDEADKLLSPEFQPSIEQLIRYLPASRQ 326

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 327 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 385

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 386 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 445

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 446 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 505

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 506 ELGTEIKSIPPQIDQAI 522


>gi|56201870|dbj|BAD73320.1| putative ethylene-responsive RNA helicase [Oryza sativa Japonica
           Group]
          Length = 521

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/375 (29%), Positives = 181/375 (48%), Gaps = 32/375 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                                 
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEATKFG--------------------------VE 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 191 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+       
Sbjct: 251 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 310

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 311 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 371 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILE 430

Query: 362 EANVSVVWEPAPSVE 376
           EA           +E
Sbjct: 431 EAGQKATVIDIEGME 445


>gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 442

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 178/365 (48%), Gaps = 6/365 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R     AP  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   ++ L +   +   L G+++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVSRGIVFVRRREDVRELSETLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREAN 364
            R   
Sbjct: 364 KRYTE 368


>gi|270307613|ref|YP_003329671.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
 gi|270153505|gb|ACZ61343.1| hypothetical protein DhcVS_172 [Dehalococcoides sp. VS]
          Length = 561

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/585 (22%), Positives = 230/585 (39%), Gaps = 74/585 (12%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N    +   +   GY   T +Q   + P +   DV+  AQTG+GKT A+ L +  
Sbjct: 2   SFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L+     +P      L IAPTRELA Q+      L  +  +      GGV++ ++ R 
Sbjct: 62  KMLS-----TPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VV  PGRL DHI    +++  ++ +++DEAD M D+GF+ DI+ IL    +  
Sbjct: 117 LRSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P +  L +  Q + V + + ++    S   +    V    +   ++ IL+
Sbjct: 177 QTLLFSATMPPEVRKLTQESQTNPVTIQVGTQAPASSV-SHSVYPVKSHQKTPLLIEILK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ ++F  T+         +++  F   +L G LSQ  R   ++  R    ++ +A
Sbjct: 236 TVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRRNFKILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+ ++   PE+  HR GRTGR  R G ++ ++            
Sbjct: 296 TDIAARGLDIDHISHVINFDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMV---- 351

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                               RD QR+L  P+    + G +              +  A  
Sbjct: 352 --------------------RDIQRLLSSPIQRLRVDGFDYATTRNDGQHQSQRRDFAPR 391

Query: 421 LRIHRAGLCAPEEITPVSL--VSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                 G   PE     +L   +  +     +R +  G         +  F      +  
Sbjct: 392 RGYSSGGYNRPEMSVNEALQTDTPAEMPLSPARPYNAGFRPGRPSNSAPRFR----REGN 447

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
              R                     +Q   +F +  A      R   + +     +    
Sbjct: 448 FAPR---------------------IQRQTSFEDSPAPSP---RPEARFNDRPSYRKENS 483

Query: 539 ------EKPDFRGYKSSGFKSKNSQD------GATKRFKRFKGAS 571
                  +P F+       +  N  D       + +R  RF G +
Sbjct: 484 FPVSEQVRPAFKKETGFTPREHNPADFENHEQPSGRRPARFNGKA 528


>gi|225159079|ref|ZP_03725387.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224802337|gb|EEG20601.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 183/366 (50%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   +   GYV+ T VQ   +   L  +D++ SAQTG+GKT AF L + + L    
Sbjct: 8   LPSSLVRGVQAMGYVDPTPVQLRAIPVVLAGRDLVASAQTGTGKTAAFALPVLARLGGHR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTREL  QV          T V   +  GGV   ++R DL+ G  
Sbjct: 68  PG-----GPRVLVLEPTRELGAQVETAFRDFGRFTDVRSTIIHGGVGYGKQRSDLRAGTD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ T GRL D I+ K + +  ++ ++LDE D MLD+GF +D++ I+   PK+R+ L FS
Sbjct: 123 IVIATVGRLMDFIKEKEIRLDSVEVLILDEVDRMLDMGFINDVKRIVGLCPKQRQTLFFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI P I  +A+   ++  R+ I      +  + +    V    + + +  IL     ++
Sbjct: 183 ATIPPEIEDVARFALQNPERIEIGRARTVNESVKHAIYPVTFEQKFDLLCAILDKLDYES 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L      V  L    SQ +R  AL+  ++GR  V +ATD+AAR
Sbjct: 243 VIIFSRTKHGADRIARRLKSKKHSVAVLHANRSQNQRVEALEGFKNGRYEVMVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ ++  NPE+ +HR GRTGRA   G +  ++  +       + R     
Sbjct: 303 GIDVAGVSHVINYDVPENPEDYVHRIGRTGRAMAVGDAFMLVTPDEAGDVHDIQRFIGAK 362

Query: 367 VVWEPA 372
           + ++  
Sbjct: 363 IPFQTL 368


>gi|170578019|ref|XP_001894230.1| eukaryotic initiation factor 4A [Brugia malayi]
 gi|158599270|gb|EDP36940.1| eukaryotic initiation factor 4A, putative [Brugia malayi]
          Length = 413

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 190/366 (51%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +++DV+  AQ+G+GKT  F +A+   +    
Sbjct: 51  LKENLLRGIYAFGFEKPSAIQQRAIIPCTKKRDVIAQAQSGTGKTATFSVAVLQNIDETI 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV     IGG +V  ++R L++G H
Sbjct: 111 PEV------QALVMAPTRELAQQIQKVMLSLGEYLGVKCHASIGGTNVRDDQRKLESGVH 164

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I  + L  +++K  VLDEADEML  GF++ I  +    P   ++++ S
Sbjct: 165 VVVGTPGRVNDMITRQSLQTNNIKMFVLDEADEMLSRGFKEQIYDVFKCMPSDVQVVLLS 224

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +   +  D +R+ +  E      I    +      +   + ++        
Sbjct: 225 ATMPSEVLEVTNRFMNDPIRILVKREELTLEGIRQFYI---NEWKFETLCDLYSTVNVTQ 281

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC+TR  V      +++  + V  + GE+ Q ER   ++  R G +RV I TD+ AR
Sbjct: 282 AVIFCNTRRKVDYLAAQMSKEKYTVSCMHGEMEQNERDVIMREFRSGSSRVLITTDLLAR 341

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  I +   R  + +    N  
Sbjct: 342 GIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFITETDMRMMKDIESFYNTQ 401

Query: 367 VVWEPA 372
           +   P 
Sbjct: 402 IEEMPM 407


>gi|73969113|ref|XP_860733.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 12 [Canis
           familiaris]
          Length = 656

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 187/378 (49%), Gaps = 14/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +     + +      GG     + RDL+ G 
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ + E   + +I     +   S++D+ ++ ++    A
Sbjct: 277 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 336

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 337 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 396

Query: 302 DVAARGIDLP------DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           DVA+RG+         D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++
Sbjct: 397 DVASRGLGFCIYVYVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 456

Query: 356 AERLFR---EANVSVVWE 370
           A  L +   EAN ++  +
Sbjct: 457 ARELIKVLEEANQAINPK 474


>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida W619]
 gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 439

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 186/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    + +   ++LR    K  +
Sbjct: 189 FSDQIRMLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKVDLFCHLLRKQRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVERLLGEGVNADGIHGDRPQATRQRALDSFKAREIQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  ++   +      ++ 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQQLATIETLIRQTLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|73965233|ref|XP_861802.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 12 [Canis
           familiaris]
          Length = 486

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 459 VLREANQAINPKLLQLVED 477


>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 443

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 177/365 (48%), Gaps = 6/365 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R     AP  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGAPRILILTPTRELAMQVAEQAEELAQFTHLKIATITGGVAYQNHGEVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKIDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   +  L +   +   L G+++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEKVSRGIVFVRRREDVRELSDTLRKRGIRSTYLEGDMAQTQRNNAIDKLKSGVVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVTHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREAN 364
            R   
Sbjct: 364 KRYTE 368


>gi|325266846|ref|ZP_08133517.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
 gi|324981587|gb|EGC17228.1| ATP-dependent RNA helicase RhlE [Kingella denitrificans ATCC 33394]
          Length = 452

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/388 (34%), Positives = 212/388 (54%), Gaps = 4/388 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     I  AL E+GY   T +QEA +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MNKFAELGLGAEIVAALEEQGYQQPTPIQEAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L    N   SPA  P+  L + PTRELA Q+ +  +       +   V  GGV++ +
Sbjct: 61  LERLKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQRYIKNLPLRHTVLFGGVNMDK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L++G  IVV T GRL DH++ K + ++ ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTAQLRSGCEIVVATVGRLLDHVKQKNIVLNKVEIVVLDEADRMLDMGFIDDIRNIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT +PAI  LA+++      V +A++N  +++++   + V    + + + 
Sbjct: 181 PRPRQTLLFSATFAPAIRKLAQDFMHSPEVVEVAAQNTTNANVEQHVIAVDTHRKRDLLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++   G +  IVFC T+ S  +  + LA     V A+ G+ SQQ R + L   + G  R
Sbjct: 241 RLIVDLGMQQVIVFCKTKQSADQVARDLARRGLSVSAIHGDKSQQTRLDVLSQFKAGSLR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  V++ E+    E+ +HR GRTGRAG  G+++ ++ ++ Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPVQAEDYVHRIGRTGRAGADGVAISMMDESEQKMY 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
           + +       +        E   E+  Q
Sbjct: 361 DAIKALTGNELPISRIEHFEPSWEQQKQ 388


>gi|189239274|ref|XP_969642.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
            castaneum]
          Length = 1494

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 181/374 (48%), Gaps = 9/374 (2%)

Query: 4    FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            F   P+ I E + + G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 1092 FHKYPE-ILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHID 1150

Query: 64   AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             +N + S    P  L +APTRELA+Q+ +E++  Y   G+      GG +   + + L +
Sbjct: 1151 GQNIKKSERGGPAVLVMAPTRELALQIDKEVKK-YEYKGITAVCIYGGGNRREQIKVLTD 1209

Query: 124  GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            G  IV+ TPGRL D      L + ++  VVLDEAD MLD+GF   I  ++ S    R+ +
Sbjct: 1210 GVDIVIATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTV 1269

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            M SAT  P +  LA++Y  D +++ + +         + I               +    
Sbjct: 1270 MTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFAT 1329

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++  I FC  +A     +  L     Q   + G+  Q +R  AL  + DG  ++ I
Sbjct: 1330 NLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILI 1389

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358
            ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAG+ G S+    +    +A+  
Sbjct: 1390 ATDVASRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKEL 1449

Query: 359  --LFREANVSVVWE 370
              +  EA   V  E
Sbjct: 1450 IAILEEAQQYVPEE 1463


>gi|189425337|ref|YP_001952514.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421596|gb|ACD95994.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 452

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 200/375 (53%), Gaps = 5/375 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + ++P  + + + + G+   T +Q   L   L  KDV   AQTG+GKT AF + L 
Sbjct: 1   MKFSDLSLPAQVLQGIHQAGFNACTPIQAQTLPLSLSGKDVAGQAQTGTGKTAAFLITLF 60

Query: 60  STLLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + LLA     +  S   P AL +APTREL VQ+ ++ + L +  G  +    GG+   ++
Sbjct: 61  TKLLASPSAAADGSLPRPRALILAPTRELVVQIEKDAQLLGSHCGFNIQAIYGGIDYMKQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +  L++GA IV+GTPGRL D+++ K  ++ H++ +V+DEAD M D+GF  D+ +IL   P
Sbjct: 121 KNALKDGADIVIGTPGRLIDYLKQKVYSLKHIEMLVIDEADRMFDMGFIPDLRYILRRLP 180

Query: 178 KKRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +    MFSAT++  +  L+  +     +V++  E      ++     V+  ++   +
Sbjct: 181 PFDQRQNLMFSATLNQRVMELSYEFMNVPQKVSVTPEKMTAERVEQVLYHVSNKEKFPLL 240

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +LR  G    ++F +T+    R    L  + F    +SG++ Q++R N L+  + G  
Sbjct: 241 LGLLRREGMARTMLFVNTKREAERLQDRLNANEFPCRVISGDVDQRKRMNILEQFKRGEL 300

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  ++    
Sbjct: 301 AILIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISLADEDGAFY 360

Query: 356 AERLFREANVSVVWE 370
            E +       V  E
Sbjct: 361 IEAIEEYIRHKVAVE 375


>gi|75675849|ref|YP_318270.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
 gi|74420719|gb|ABA04918.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
          Length = 483

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 194/374 (51%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY + T +Q+  +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 125 VLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT+   I  +   +  +  ++ ++      + +    V  +    +   +       AK 
Sbjct: 185 ATMPNEIRRVTDTFLHNPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLREAKE 244

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAI+FC+ +  V+   K L +H F   AL G++ Q  R+ +L   R G   + +A+DV
Sbjct: 245 LKNAIIFCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V++ ++  +P++ +HR GRTGRAGR G ++ ++     +    + +  
Sbjct: 305 AARGLDIPEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAIEKLT 364

Query: 364 NVSVVWEPAPSVEA 377
             ++     P  +A
Sbjct: 365 GQAIPQADLPGHDA 378


>gi|188588593|ref|YP_001920789.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498874|gb|ACD52010.1| cold-shock deAd box protein a [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 367

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 183/366 (50%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I   L++ G    T++QE  +   L  KDV+  A+TG+GKT+AF L +   +  + 
Sbjct: 8   INENIVNILNKNGIKTPTAIQEESIPKILSGKDVIGEAKTGTGKTLAFLLPIFQNISPDT 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    L ++PTRELA+Q+  E + L     + +    GG  +  + + L++  H
Sbjct: 68  ------NGTQVLILSPTRELAIQITEETKKLNVNNDINILAAYGGKDIGSQLKKLKHNVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DHI  K +++S LK +V+DEAD+ML +GF++DIE I+  + KK + L FS
Sbjct: 122 LVIATPGRLLDHIDRKTIDLSKLKTIVIDEADQMLLMGFKNDIEKIMKVASKKHQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y  D + ++I S       I  + V      + +++   L+      
Sbjct: 182 ATMDSQVKKLAYRYMIDPLFIDIKSPTIAVDKIKQQVVETTDRWKQDSLCATLQEDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+         L +       +  ++ Q +R   ++  R+   +  IATDVAAR
Sbjct: 242 AIIFCRTKRRADVLEIALHQKGLNCQKIHSDVPQAKRERIMKSFRNADIQYLIATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  + + +    PE+ +HR GRTGRAG  G +   +          +  +   +
Sbjct: 302 GIDISGVSHIYNYDTPETPESYIHRIGRTGRAGEDGYTCMFVAPKDSSLLNAIETKLGFT 361

Query: 367 VVWEPA 372
           +     
Sbjct: 362 IPRREI 367


>gi|71018491|ref|XP_759476.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
 gi|46098964|gb|EAK84197.1| hypothetical protein UM03329.1 [Ustilago maydis 521]
          Length = 534

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 171/373 (45%), Gaps = 11/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT A+ +     
Sbjct: 149 FEDYFLKRELLMGIFEAGFERPSPIQEEAIPIALTGRDILARAKNGTGKTAAYVIPSLEK 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + ++        A+ + PTRELA+Q  +  + L    GV V V  GG ++  +   L
Sbjct: 209 LNTKKNKI------QAVLLVPTRELALQTSQVAKTLGKHLGVEVMVTTGGTTLRDDILRL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   PK+R+
Sbjct: 263 GQTVHLLVGTPGRILDLAGKGVADLSQCTTFVMDEADKLLSPEFTPVMEQLLSFLPKERQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +             +N+  E             V    + + +  +   
Sbjct: 323 VMLFSATFPLIVKDFKDRNMVKPYEINLMDELTLRGV-TQYYAFVEERQKVHCLNTLFSK 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 382 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQAHRNRVFHDFRNGACRNLVCS 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 442 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 501

Query: 362 EANVSVVWEPAPS 374
           E    +  +P PS
Sbjct: 502 ELGTEI--QPIPS 512


>gi|257064977|ref|YP_003144649.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
 gi|256792630|gb|ACV23300.1| DNA/RNA helicase, superfamily II [Slackia heliotrinireducens DSM
           20476]
          Length = 657

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 189/380 (49%), Gaps = 6/380 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +      A+ + GY   T +Q+  +   L  +D++ +A+TG+GKT AF L    
Sbjct: 8   TFDESGLSATALAAVYDLGYEEPTPIQQQAIPVVLEGRDLIAAAKTGTGKTAAFALPTMD 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L            P+ + + PTRELA+Q+    E +  +T   V   +GGVS   + + 
Sbjct: 68  KLPYAGK----GEGPVMVIVTPTRELAMQISEVCETIAKRTNHRVVTLLGGVSYTPQIKK 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I++ TPGRL D +R    ++  ++ +VLDEAD MLD+GF   +  I+D++P +R
Sbjct: 124 LRSGCDIIIATPGRLLDLMRQHEADLDLVQVLVLDEADRMLDMGFWPQVSEIVDATPSER 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSATI  +   +  +       + I+        +D   +     ++   +   +R
Sbjct: 184 QTLLFSATIDRSQDKVMFSLLNHPEIIEISHRGDTADLVDQYIIWTGRREKPALLNAFIR 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    IVF  T+      T+ L +      A+  + SQ +R  AL+  R+G+  V +A
Sbjct: 244 EKGGFRVIVFTKTKGGADNCTRRLCKIGIGAEAIHADRSQAQRQRALERFREGKTHVIVA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARGID+P+++ V++ +L   PE+ +HR GRTGRAG  G +V  +  + +     + 
Sbjct: 304 TDVLARGIDVPEVDYVVNYDLPMMPEDYVHRIGRTGRAGVAGYAVSFVTPDTKNLLRSIQ 363

Query: 361 REANVSVVWEPAPSVEAIRE 380
           +     +      + E   E
Sbjct: 364 KFIGEDIQVMEFKAGEDAYE 383


>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 127/416 (30%), Positives = 219/416 (52%), Gaps = 17/416 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I +    AL E  +V  T VQE  +   ++ +D++V ++TGSGKT+AF + +   
Sbjct: 6   FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L          S   A+ + PTRELA QV R    +    G    V  GG  + R+   L
Sbjct: 66  LN---------SGLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA +V+GTPGR+ D +R   LN++ ++  VLDEAD MLD+GF DDI++IL  +PK ++
Sbjct: 117 -KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQ 175

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M++FSAT+ P I +LA+ Y K+  ++ ++ +     ++    V V   ++   + ++L  
Sbjct: 176 MMLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLIS 235

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  ++FC+TR       ++L ++ F+  AL G++ Q  R+  +   + G+  + ++T
Sbjct: 236 ERGKY-LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVST 294

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  V++ ++   P++ +HR GRTGR    G ++  + +  +    R+  
Sbjct: 295 DVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIED 354

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                +      +V  I+ER   + + D   +     + K      L++ D  KIA
Sbjct: 355 FIGKRIPKMEIKNVGKIKERTDYKEISDIFGMVKFNFELKNE----LSEWDLIKIA 406


>gi|195352029|ref|XP_002042518.1| GM23393 [Drosophila sechellia]
 gi|194124387|gb|EDW46430.1| GM23393 [Drosophila sechellia]
          Length = 519

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/395 (28%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 72  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V++ ++++ +    +    + + +  +D  +V+IL      
Sbjct: 246 SATMTKKVKKLQRASLKDPVKIEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +         V A++ER A+      L L  ++ 
Sbjct: 426 QLTLYKCEEDEVMALQERVAEAQRTAKLELKDLED 460


>gi|145353098|ref|XP_001420866.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581101|gb|ABO99159.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 404

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   I + +   L   G+   +++Q+  + P +  +DV+  AQ+G+GKT    LAL  
Sbjct: 32  TFDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQ 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       + +     L ++PTRELAVQ  +    L     V V  CIGG S+  + R 
Sbjct: 92  MLD------TTSREVQGLVLSPTRELAVQTEKTALSLGNFMNVQVHACIGGRSIGDDIRK 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P + 
Sbjct: 146 LDYGCHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPET 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 206 QVVLVSATLPNEVLEMTSKFMTDPMRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + ++ F V A+ G++ Q+ER   +   R G  RV I
Sbjct: 266 DTLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLI 325

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 326 TTDVWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKADDVRALRDI 385

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 386 EQYYSTQIDEMPMNVADLI 404


>gi|70728927|ref|YP_258676.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
 gi|68343226|gb|AAY90832.1| ATP-dependent RNA helicase SrmB [Pseudomonas fluorescens Pf-5]
          Length = 473

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 186/372 (50%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 34  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L + PTRELA Q  +E+E     T +   +  GG     +   L+    
Sbjct: 91  GPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 150

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D++ ++D  P +++ ++FS
Sbjct: 151 ILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLFS 210

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   +     +AK           +      +             ++  +  +L     
Sbjct: 211 ATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQIVNWLLANETY 270

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TRA   R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATDVA
Sbjct: 271 QKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVA 330

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +I          + R   
Sbjct: 331 ARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLK 390

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 391 QSFERRTIKEVK 402


>gi|125979227|ref|XP_001353646.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
 gi|54642411|gb|EAL31160.1| GA19578 [Drosophila pseudoobscura pseudoobscura]
          Length = 812

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 177/370 (47%), Gaps = 5/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L   L+ + 
Sbjct: 282 FDEQLIKAVRKAEYTQPTPIQAQAVPTALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQR 341

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 342 E-LKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGAE 400

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 401 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 460

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 461 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 520

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A        L       + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 521 GSVLIFVTKKADAETVANNLLVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 580

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R  N
Sbjct: 581 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR--N 638

Query: 365 VSVVWEPAPS 374
           +    +  P 
Sbjct: 639 LEGADQEVPE 648


>gi|312377148|gb|EFR24056.1| hypothetical protein AND_11649 [Anopheles darlingi]
          Length = 400

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 196/373 (52%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  ++    
Sbjct: 34  LREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQSMD--- 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +       L ++PTRELAVQ+ + +  L     +    CIGG ++  + R L  G H
Sbjct: 91  ---TTLRETQVLCLSPTRELAVQIQKVILALGDFMNIQCHACIGGTNLGEDIRKLDYGQH 147

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ S
Sbjct: 148 VVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 207

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D +R+ +  +      I    V +     + + + ++       
Sbjct: 208 ATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV A
Sbjct: 268 QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  + 
Sbjct: 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 387

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 388 QIDEMPMNVADLI 400


>gi|209877927|ref|XP_002140405.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556011|gb|EEA06056.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 680

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 189/377 (50%), Gaps = 17/377 (4%)

Query: 1   MKIF---ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F   E I +++   +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   
Sbjct: 196 MHNFMEIEGIHEILLANIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 255

Query: 58  LASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           +   +L +    +P  +         P+AL ++PTRELA+Q+  E       TG+   V 
Sbjct: 256 IIMRMLKDGPPPTPQQSSLRIKRVAYPVALVLSPTRELAIQIYEESRKFCYGTGIRTNVL 315

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  +  DL  G+ IVV TPGRL D I    + +  +K ++LDEAD MLD+GF   
Sbjct: 316 YGGSEIRNQILDLDRGSDIVVATPGRLRDLIDRGKVYLKLIKFLILDEADRMLDMGFAPQ 375

Query: 169 IEFILDSSPKKR-----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           I  I++ S         + +MFSAT    I  LAK++    + + +         I  R 
Sbjct: 376 IREIIEDSDMPHSLEGRQTVMFSATFPREIQQLAKDFLHSYIFLTVGRVGATSGSIVQRV 435

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           V      +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER
Sbjct: 436 VYAEEDHKPRLLVKLLMEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQER 495

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL++ R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G+
Sbjct: 496 EHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGL 555

Query: 344 SVFVIPQNMQRRAERLF 360
           +   + +N +     L 
Sbjct: 556 ATSFVNENNKPILRDLL 572


>gi|108757460|ref|YP_630529.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
 gi|108461340|gb|ABF86525.1| ATP-dependent RNA helicase [Myxococcus xanthus DK 1622]
          Length = 418

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/414 (28%), Positives = 193/414 (46%), Gaps = 13/414 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   +    AL    +   T +Q+  + P L  +DV+  A TG+GKT A+ L L  
Sbjct: 4   TFDNLGLSRETLGALRRARFTQPTPIQQQAIPPALAGRDVIGCAATGTGKTAAYVLPLVE 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +     LAL +APTREL  Q+   + +      +  A  IGG  +  +   
Sbjct: 64  RL-------AGKKGTLALVLAPTRELVQQIAEPVRFFAEPRRLTHATVIGGEDMGAQVNA 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+     V+ TPGRL D +    +   HL+A+VLDEAD MLD+GF   +E I+   P++R
Sbjct: 117 LKTLPSFVIATPGRLVDLMENTAIRFPHLEALVLDEADRMLDMGFLPQLERIVAHLPRRR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P +T  AK+     VR+ +          + R   +   ++   ++ +L 
Sbjct: 177 QTLLFSATLGPDVTRFAKSRLYKPVRLEVTRSGTPAERAEQRLYFLRPEEKTPLLLTLLA 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A  A+VF   +  V +  + L     +   L  + +Q +R  A++  R+G  R  +A
Sbjct: 237 QDSAT-ALVFTRAKERVDKVQRALQRAGHRTAVLHADRTQNQRKQAMEGFRNGTYRCLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+ D+  VI+ +L    E+ +HR GRT RA   G++         +   R+ 
Sbjct: 296 TDIAARGLDVEDVGHVINYDLPHAAEDYVHRIGRTARAAASGVASTFATTREGQVITRIE 355

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKH 411
                 +     P  + + +   +  L   +DP       G  K+  D+   +H
Sbjct: 356 HLMRSEIPRVQVPREDPVFKEAWEAFLAAQKDPGPPQKDHGQSKRAPDLAPGRH 409


>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 434

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 135/401 (33%), Positives = 205/401 (51%), Gaps = 4/401 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P++I +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPEII-QALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+      S  +AP AL +APTRELA Q+          T + V    GGVS   +   
Sbjct: 62  KLV--ESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF +D++ ++ S  ++R
Sbjct: 120 LKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K A  V +   N   S +++    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +     K L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAGR+G ++  + +  +     + 
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIE 359

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDE 400
                 +        E + RE    +I + P  L   + ++
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNK 400


>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 458

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/419 (28%), Positives = 217/419 (51%), Gaps = 12/419 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ +      +   T +Q+  +   L+ +DV+  A+TGSGKT AF L +  
Sbjct: 23  TFKDLGIVDVLCQTCESLKWKAPTKIQKEAIPLTLQGRDVIGLAETGSGKTGAFALPILQ 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R+       AL + PTRELA Q+  + + L +K GV  AV +GG+ +  +   
Sbjct: 83  ALLQNPQRY------FALILTPTRELAFQISEQFQALGSKIGVKTAVIVGGMDMMSQALL 136

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++
Sbjct: 137 LAKKPHVIIATPGRLVDHLENTKGFNLKALKFLVMDEADRILNMDFEVEVDKILKVIPRE 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR L+FSAT++  +  L +    D V+V ++S+ +    +    + + +  +D  +V+I+
Sbjct: 197 RRTLLFSATMTQKVQKLQRASLHDPVKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSII 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++FC T  +  R   +L +  F  + L G++SQ +R  AL   R     + I
Sbjct: 257 NEMAGNTFMIFCGTCHNTLRTALLLRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILI 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+
Sbjct: 317 STDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 376

Query: 360 FREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415
            +     +        E   ++ER A+      + +  I   + KK +      +D  +
Sbjct: 377 EQLIGKKLPLFKIEEDEVMTLQERVAEAQRNSKMEMKHISEMKGKKGIKRKTDDNDDTE 435


>gi|115403005|ref|XP_001217579.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
 gi|121734401|sp|Q0CBE1|DHH1_ASPTN RecName: Full=ATP-dependent RNA helicase dhh1
 gi|114189425|gb|EAU31125.1| hypothetical protein ATEG_08993 [Aspergillus terreus NIH2624]
          Length = 509

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q     + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|169779864|ref|XP_001824396.1| ATP-dependent RNA helicase dhh1 [Aspergillus oryzae RIB40]
 gi|91206577|sp|Q2U5A2|DHH1_ASPOR RecName: Full=ATP-dependent RNA helicase dhh1
 gi|83773136|dbj|BAE63263.1| unnamed protein product [Aspergillus oryzae]
          Length = 511

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q     + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|125549135|gb|EAY94957.1| hypothetical protein OsI_16765 [Oryza sativa Indica Group]
          Length = 484

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 112 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 172 IDQDK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     + +   +V+DEAD++L   F+  I+ ++   P  R+
Sbjct: 226 YQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLLSPEFQPSIQELIRYLPSNRQ 285

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 286 ILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 344

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 345 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 404

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 405 DLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 464

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P     AI
Sbjct: 465 ELGTEIKPIPPQIDRAI 481


>gi|1170511|sp|P41382|IF410_TOBAC RecName: Full=Eukaryotic initiation factor 4A-10; Short=eIF-4A-10;
           AltName: Full=ATP-dependent RNA helicase eIF4A-10
 gi|475213|emb|CAA55642.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475216|emb|CAA55641.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H
Sbjct: 106 -----LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  ++     I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|194878451|ref|XP_001974067.1| GG21281 [Drosophila erecta]
 gi|190657254|gb|EDV54467.1| GG21281 [Drosophila erecta]
          Length = 524

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 76  LNETLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 136 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 189

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 190 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 249

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 250 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELSGN 309

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 310 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 369

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 370 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 429

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +         V A++ER A+      L L  ++ 
Sbjct: 430 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLED 464


>gi|189242416|ref|XP_001811064.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 1142

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 187/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+ I + + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 556 NFPEYIMQVILKQGFAEPTAIQSQGWPVVLSGRDLVGIAQTGSGKTLAYMLPAVVHINNQ 615

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+AL +APTRELA Q+ +      + T V      GG     + RDL+ G 
Sbjct: 616 Q-RPQRGEGPVALILAPTRELAQQIQKVAHEFGSTTMVRNTCIFGGSPKGPQARDLERGV 674

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R++LM+
Sbjct: 675 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMW 734

Query: 186 SATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA+ +  D ++VNI     + N     I          ++   ++  +  
Sbjct: 735 SATWPKQVQALAEEFLVDYIQVNIGGLSLAANHNIKQIVEVCEESEKEEKLCKLLKEIGS 794

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+  V   TK +    +  +++ G+ SQ ER   L   R G++ + +AT
Sbjct: 795 DSCNKIIVFVETKKKVDDITKCIRREGYAAISIHGDKSQPERDYVLSEFRTGKSSILVAT 854

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N QR+A+ L  
Sbjct: 855 DVAARGLDVEDVKYVINFDYPNSSEDYVHRIGRTGRCQQAGTAYAFFTSNNQRQAKDLIA 914

Query: 360 -FREANVSVVWE 370
              EA  +V  E
Sbjct: 915 VLEEAGQNVSAE 926


>gi|310800761|gb|EFQ35654.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 530

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 173/371 (46%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FENFQLKRDLLMGIFEAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEK 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKVSKI------QALILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 163 QDPVHIVVGTPGRILDLAGKNVADLSECSMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       +++QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIEK 401

Query: 362 EANVSVVWEPA 372
           +    +   PA
Sbjct: 402 DLGTEIQPIPA 412


>gi|67459931|ref|NP_001019988.1| probable ATP-dependent RNA helicase DDX46 [Danio rerio]
 gi|82277867|sp|Q4TVV3|DDX46_DANRE RecName: Full=Probable ATP-dependent RNA helicase DDX46; AltName:
           Full=DEAD box protein 46
 gi|66473312|gb|AAY46301.1| DEAD box protein 46 [Danio rerio]
          Length = 1018

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/497 (24%), Positives = 225/497 (45%), Gaps = 17/497 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +     
Sbjct: 351 VLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VG 409

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  PLA+ + PTRELA+Q+ +E +       + V    GG  +  +  +L+ GA I+V 
Sbjct: 410 EAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVC 469

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VV+DEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 470 TPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 529

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T    +  LA+      V V +   +   SD++   +++    +   ++ IL ++  K +
Sbjct: 530 TFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGS 589

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L +  +  ++L G + Q +R + +   ++G  R+ +AT VAAR
Sbjct: 590 VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAAR 649

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I +   R +  + +   +S
Sbjct: 650 GLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELS 709

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
               PA  +E +     ++   +   + S  G   K       +H          +    
Sbjct: 710 GSSVPA-ELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKFDETEHALANERKKLQKWALG 768

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
              + +E T + +    +   +  +  K               S+S GS         + 
Sbjct: 769 LHDSDDEDTALDIDEQIESMFNSKKRVKDFSAPG---------SVSAGSAGGVSGS--VS 817

Query: 487 MLCRSSGINRQSIGAIR 503
            +     ++  S G I+
Sbjct: 818 AVSGLGSLSTPSAGNIQ 834


>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 432

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     +   L ++G    T +QE  +    +  D++  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + L A   V +   IGG ++  + 
Sbjct: 61  LQRIHTD------VHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L    H+++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    V V    ++     ID R  ++   D+   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++      AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IQEDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
 gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans]
          Length = 398

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 195/375 (52%), Gaps = 11/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + +   +   G+   +++Q   +   +  +DV+  AQ+G+GKT  F + +  
Sbjct: 24  TFESMHLKEDLLRGVYAYGFEAPSAIQSRAITQIISGRDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +      +    +L ++PTRELA Q+ + +  L     +    C GG ++  + + 
Sbjct: 84  VIDFK------SRELQSLVLSPTRELAKQISQVVGNLGDYMNISAHACTGGKAMQTDTKK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSPK 178
           L +G H+V GTPGR+ D I+ + LN  HLK ++LDEADE+L     F+  I  I    PK
Sbjct: 138 LTHGCHVVSGTPGRVLDMIKRRILNTRHLKMLILDEADELLSETLGFKQQIYDIFAKLPK 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVN 237
             ++++ SAT+S  I  + K +  D V++ +  +      I      +     + + + +
Sbjct: 198 SVQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLEGIKQYHVNVDREEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+T+  V   +  L +  F V ++ G++ Q++R   +   R G +RV
Sbjct: 258 LYDSLTITQCVIFCNTKKVVDWLSSKLLQANFAVASMHGDMKQEDRDRVMNDFRSGTSRV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  I ++  +  +
Sbjct: 318 LISTDVWARGIDVQQVSLVINYDLPDNLENYIHRIGRSGRFGRKGVAINFITRDDAQGLK 377

Query: 358 RLFREANVSVVWEPA 372
            + +  +V +   PA
Sbjct: 378 AIEKHYSVKIRPMPA 392


>gi|300779124|ref|ZP_07088982.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504634|gb|EFK35774.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 373

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 189/371 (50%), Gaps = 7/371 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   I  A++E GY   T +Q   +   L  KD++  AQTG+GKT AF + +
Sbjct: 1   MMSFKSLNLINAIIRAVTEAGYSKPTEIQYTAIPHILAGKDIIGCAQTGTGKTAAFAMPI 60

Query: 59  ASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L     +++P       L + PTRELA+Q+            +      GGVS   +
Sbjct: 61  LQLL----KKYTPDHKEIRTLILTPTRELAIQIEENFAVYSKYLPLSQLSIYGGVSAGGQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+    I+V TPGRL D +  + +++S ++  VLDEAD MLD+GF +D++ +L   P
Sbjct: 117 LAALRKRVDILVATPGRLLDLVNQRHIDLSKIEIFVLDEADRMLDMGFINDVKKVLKLIP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +KR+ L FSAT+   I   A+    + V+V +   +     +      V   D+   +++
Sbjct: 177 QKRQTLFFSATMPSGIRKFAETILNNPVKVTVTPVSSTAQTVKQSVYFVEKRDKTGLLID 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    + ++VF  T+   ++  + L        A+ G  SQ  R NAL   +  + +V
Sbjct: 237 LLQNENMRRSLVFTRTKYIANKLVQQLEGVGIFAAAIHGNKSQTARQNALDDFKSSKIKV 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARGID+ DL  V++ EL + PE  +HR GRTGRAG +G ++     + +   +
Sbjct: 297 LIATDIAARGIDIDDLPHVVNYELPNIPETYVHRIGRTGRAGTEGTAISFCDTDERLDLK 356

Query: 358 RLFREANVSVV 368
            + +    ++ 
Sbjct: 357 NIQKLIGFTMP 367


>gi|15150336|gb|AAK85400.1|AF399934_1 RNA helicase p47 [Spisula solidissima]
          Length = 449

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+ + + +QEA +   L  +D+L  A+ G+GKT A+ + +   
Sbjct: 55  FEDFCLKRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILER 114

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         A+ I PTRELA+Q  + L  L    G  + V  GG ++  +   L
Sbjct: 115 IDNTKDEV------QAMCIVPTRELALQTSQILIELSKHIGAKIMVTTGGTNLKDDIMRL 168

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H +V TPGR+ D +    + I     +VLDEAD++L   F+  ++ I+   P  R+
Sbjct: 169 YEPVHAIVATPGRILDLMNKNLVKIGKCGILVLDEADKLLSQDFKGMLDSIISHLPNDRQ 228

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT   ++    + Y +    +N+  E             V    + + +  +   
Sbjct: 229 ILLYSATFPLSVEQFMRKYLQSPYEINLMDELTLKGV-TQYYAFVQEKQKVHCLNTLFSK 287

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++QQ R+      R G  R  + +
Sbjct: 288 LQINQSIIFCNSTQRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVCS 347

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G+++ +I  + +    ++  
Sbjct: 348 DLFTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIAINLITYDDRFSLHKIES 407

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 408 ELGTEIKPIP 417


>gi|255319837|ref|ZP_05361042.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262380369|ref|ZP_06073523.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303156|gb|EET82368.1| DEAD/DEAH box helicase [Acinetobacter radioresistens SK82]
 gi|262297815|gb|EEY85730.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 618

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 162/582 (27%), Positives = 253/582 (43%), Gaps = 29/582 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL++ G+   T+VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       +R    + P  L I+PTRELA QV ++   L      V    I G  
Sbjct: 63  NALADQDTFLPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +  I  LA+   KD +R+ I + +  ++DI            + 
Sbjct: 183 ELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R           +G            + 
Sbjct: 363 RGKIRALEDYLETRLNVSEIEGLEPSPPPARPRREGGGGKRPGGRGGFGGGRRFEGESNF 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             +      R  R+    P    P      +  F D       G   + +F        S
Sbjct: 423 KRREGGRDDRPRRSFDDRPRGERPFGDDRPKRDFGDRPARRDFGDRPQRSFDDKPRGERS 482

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
            G  ++   R        +S   ++S G        +F      G D  RR+   DK   
Sbjct: 483 FGGAER--PRREF-----NSDRPQRSFG--DRPQSRSF-----GGEDRPRRSF-DDKPRG 527

Query: 533 LKYLGGEKPDFRGYKSSGFKSKNSQDGATK-RFKRFKGASKN 573
            +  GG++P     +  GF  K   D     R  R     +N
Sbjct: 528 ERNFGGDRP----RREGGFNDKPRFDSNDDNRGNRVDYKPRN 565


>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
 gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
           KT]
          Length = 460

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 214/418 (51%), Gaps = 5/418 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL  
Sbjct: 20  NLAPELLKALDESGYTTPTPIQAQAIPVVLEGSDLMAGAQTGTGKTAAFTLPLLQKLLPL 79

Query: 66  -NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +   SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L  
Sbjct: 80  ASSSASPARHPVRALILTPTRELAIQVEESVKTYAKHTPLRSLVVFGGVDIKSQTPTLMK 139

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH+  + + +  ++ +VLDEAD MLD+GF  D++ IL   PK+R+ L
Sbjct: 140 GVEILVATPGRLLDHVEQRTVQLGQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNL 199

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT SP I  L++ +    V + +A  N    ++  + +LV    + +  +  L    
Sbjct: 200 MFSATFSPEIKKLSEEFLTKPVLIEVARSNATSENVTQKILLVESEHKQHV-LADLLRKE 258

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+ S SR  + L        A+ G+ SQ ER  AL   + G+    +ATDV
Sbjct: 259 ATQVIVFTKTKLSASRLARHLEREGIAAGAIHGDKSQLERIQALDAFKQGKITALVATDV 318

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L +V++ EL S  E+ +HR GRTGRAG  G+++ ++    ++  + + +  
Sbjct: 319 AARGLDIDQLPMVVNYELPSAAEDYVHRIGRTGRAGASGIAISLVSSEEEKFLKEIEKLI 378

Query: 364 NVSVVWEPAPSVEAIRE-RDAQRILQDPLFLDSIQGDEKKMVDVLLAK-HDPEKIAAG 419
              +  E A + + +R  +D QR           +   +   D    K ++P   A  
Sbjct: 379 KRELPKEQANAPQPVRRGQDTQRQKAPASIAPRQRHAGRNKEDEWFFKPYEPSTDAPA 436


>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 432

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 190/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     +   L ++G    T +QE  +    +  D++  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + L A   V +   IGG ++  + 
Sbjct: 61  LQRIHTD------VHQEQVLIIAPTRELIKQISDEAKVLGAVLDVDILPLIGGKTIESQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L    H+++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLHMGFLPDIENLIGQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    V V    ++     ID R  ++   D+   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPEDKTPRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++      AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IQEDNPYLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPADESWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|195580593|ref|XP_002080120.1| GD24302 [Drosophila simulans]
 gi|194192129|gb|EDX05705.1| GD24302 [Drosophila simulans]
          Length = 519

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 209/395 (52%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 72  LNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 131

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 132 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 185

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 186 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 245

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 246 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 306 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKTKNRSILISTDVAS 365

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 366 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 425

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +         V A++ER A+      L L  ++ 
Sbjct: 426 QLTLYKCEEDEVMALQERVAEAQRTAKLELKDLED 460


>gi|86157651|ref|YP_464436.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774162|gb|ABC80999.1| DEAD/DEAH box helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 628

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/453 (30%), Positives = 218/453 (48%), Gaps = 13/453 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +  A++E GY   T VQ A   P    KDV+V ++TG+GKT AF + +  
Sbjct: 21  SFDDMGLSEPVRRAVAEHGYTKPTPVQSATFRPIRDGKDVIVRSKTGTGKTAAFTIPILE 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +      P AL + PTRELA+QV  E+  L     + V    GG S+  +   
Sbjct: 81  RIPDGRRK------PSALVMCPTRELAIQVAEEVTALAKHRDLGVVTIYGGASMGDQLDK 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVVGTPGR+ DHIR K L +  +    LDEADEML++GF +++  ILD  P   
Sbjct: 135 LKAGAEIVVGTPGRIYDHIRRKTLRLEEVMVCCLDEADEMLNMGFFEEVTRILDHLPADV 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT+   I  +  +Y  D   +     E +  +  +     V    +   ++ ++
Sbjct: 195 QQLLFSATVPADIEQIIHDYLTDPETILLSGDEYKVENINNVMYPTVDAYPKPRNLLYMI 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AI+FC+TR+  S  T VL  + +    L+G+L Q+ER   +  ++ G  R  +
Sbjct: 255 GMEEPEAAIIFCNTRSDTSLVTAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ DL  VI+  L  +P   LHR GRTGR G+KG S+ ++          L
Sbjct: 315 ATDIAARGIDISDLSHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSLVSGGDLHTLTAL 374

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            ++  +    +  P+ E  R+    R   +L+D +   SI      +   L  + D E +
Sbjct: 375 QKKYEIVFEKKALPTPEEARKIWTDRHVAVLKDAM-SSSIFEAYIPLAQELRNRPDGEYL 433

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            +  L+         +          R      
Sbjct: 434 ISFALKYFFTHQRMEKAQDREKAEHKRTEHERR 466


>gi|27367036|ref|NP_762563.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
 gi|27358604|gb|AAO07553.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus CMCP6]
          Length = 509

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 187/380 (49%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+ 
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 67  PRV-RANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ ++LDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + + +++   N     ++       +  +   +  +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++           ERL +E 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFAIERLIQEL 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
                 E      A+ E   
Sbjct: 366 LPRKALEGYAPTNAVPESKL 385


>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
 gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
          Length = 421

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L  
Sbjct: 2   IRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S  +    L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQYLLDFPRKKSGPA--RMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I G+  +   ++ +VLDEAD MLD+GF   ++ +      
Sbjct: 120 DILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     I    ++  K+   ++  S  R+   I         +     I+ 
Sbjct: 180 RKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHKLNILK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +I+F  TR  +      L       V + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITEQAERSIIFLKTRDRLGELRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   E
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIE 359

Query: 358 RLFREANVSVVW 369
           R+ R    ++  
Sbjct: 360 RVARYTEDAIKE 371


>gi|254566967|ref|XP_002490594.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|238030390|emb|CAY68313.1| Nucleolar protein required for maturation of 18S rRNA [Pichia
           pastoris GS115]
 gi|328350981|emb|CCA37381.1| DEAD-box protein, putative RNA helicase similar to S. cerevisiae
           FAL1 (YDR021W) involved in rRNA processing [Pichia
           pastoris CBS 7435]
          Length = 396

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 197/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + +   +   G+   +++Q   +   L  KD +  AQ+G+GKT  F + + +
Sbjct: 24  SFEEMNLKEDLLRGIYGYGFEAPSAIQSRAIMQILTGKDTIAQAQSGTGKTATFSIGMLN 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      A+ ++PTRELAVQ+   ++ L     +    CIGG SV  + + 
Sbjct: 84  VVD------TKKKDTQAIVLSPTRELAVQINNVIQNLGDYMNIHTYACIGGTSVGEDLKK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G HIV GTPGR+CD I+ + LN+ ++K +VLDEADE++  GF++ I  I  + P   
Sbjct: 138 LQKGQHIVSGTPGRVCDMIKRRNLNVRNVKMLVLDEADELMTKGFQEQIYDIYKTLPPST 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++++ SAT++  +  +   +  D V++ +  +      I            + + + ++ 
Sbjct: 198 QVVVVSATLTKEVLVMTNKFMNDPVKILVKRDEVSLEGIRQFYIQCEKEEWKFDTLCDLY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ L +  F VV++ G++ Q++R   +   R G +RV I
Sbjct: 258 DSLTVTQAVIFCNTKKKVDWLTEHLRKANFTVVSMHGDMKQEDRDRIMNEFRLGNSRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ ++    EN +HR GR+GR GRKGM+V ++ +        +
Sbjct: 318 STDVWARGIDVQQVSLVINYDIPFAKENYIHRIGRSGRFGRKGMAVNLVTEEDIGELHAI 377

Query: 360 FREANVSVVWEPA 372
            +  +  +   PA
Sbjct: 378 EKYYSKKIEEMPA 390


>gi|255541534|ref|XP_002511831.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223549011|gb|EEF50500.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 507

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 171/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 135 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 195 IDQDNNVI------QVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 248

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 249 YQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPPTRQ 308

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      + +    +N+  E             V    + + +  +   
Sbjct: 309 ILMFSATFPVTVKDFKDRFLQKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 367

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 368 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 427

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 428 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 487

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 488 ELGTEIKQIPPHIDQAI 504


>gi|195475963|ref|XP_002090252.1| GE12898 [Drosophila yakuba]
 gi|194176353|gb|EDW89964.1| GE12898 [Drosophila yakuba]
          Length = 522

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 211/397 (53%), Gaps = 9/397 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  E  + + + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 75  LNETLCQACDELKWRSPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 135 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 188

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 189 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 248

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 249 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNDLAGN 308

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 309 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 368

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 369 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDIELYQRIEHLLGK 428

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +         V A++ER A+      L L  ++  +
Sbjct: 429 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLEDTK 465


>gi|85705347|ref|ZP_01036446.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
 gi|85670220|gb|EAQ25082.1| putative ATP-dependent RNA helicase protein [Roseovarius sp. 217]
          Length = 438

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 207/384 (53%), Gaps = 9/384 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F+   +P  +   L+  G    T +Q   +   L   DVL  AQTG+GKT+AFGL L
Sbjct: 1   MNLFDEMGLPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L+ E  + +P +   +L +APTRELA Q+   L  L   + + + + +GG S++ + 
Sbjct: 61  ITRLMEEPGKPAPKT-IRSLILAPTRELAGQIRDSLLPLVKDSPIKIGLVVGGASINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+V TPGRL D I  + + +   + +VLDE D+MLDLGF   +  I      
Sbjct: 120 KRLEQGIDILVATPGRLLDLIDRRAVRLDAARFLVLDEGDQMLDLGFIHALRRIAGLLAA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ +MFSAT+   +  LA +Y ++  RV ++   +    +      +A + + + ++ +
Sbjct: 180 ERQTMMFSATMPKQMEELAGSYLRNPKRVQVSPPGKAADKVTQEVHFIAKASKPDLLIEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H ++ A+VF  T+    +  K L +  F V  + G  SQ +R  AL+  RDG+ ++ 
Sbjct: 240 LGKHKSELALVFGRTKHGSDKLAKRLEQAGFAVATIHGNKSQGQRERALKAFRDGQVKIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+N +HR GRT RAG+ G ++     +     + 
Sbjct: 300 VATDVAARGLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGKDGAAIAFCAPDEMGELKD 359

Query: 359 LFREANVSV------VWEPAPSVE 376
           + +    ++       WE  P  +
Sbjct: 360 IQKVLGTTIPVASGRPWEVLPDPK 383


>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 573

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 212/495 (42%), Gaps = 25/495 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P SA   + ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPESAINCVIMSPTRELAQQIDQGMQGFAYYLDGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGR   HI    +++S +   +LDEAD MLD+GF DDI  I    P
Sbjct: 120 LKSLALGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFADDIMTIAKKLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +
Sbjct: 180 ATCQTIMFSATMPAKIEELAKTLLKNPVEI-KLAVSKPAEKIQQTAYVCYETQKMGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  I+F  ++  V +    L         +  +L Q++R++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIIFSGSKQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  + ++     +
Sbjct: 299 LVATDIVSRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYFFQ 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++       V     P+   + E    +    P    +     ++      +  D ++  
Sbjct: 359 QIESFLEKEVEKAQLPA--ELGEGPEYKSNGKPKKAGNSAKSRRRKDRDHQSHKDKKQ-- 414

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-------- 469
                  R    AP+        +   + R            + +   ++          
Sbjct: 415 --GNNKQRNRRPAPQTQNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATEGKPVNKKN 472

Query: 470 -SLSVGSKQKAEARW 483
              + G +Q+ + + 
Sbjct: 473 NRQNKGKQQERQPKA 487


>gi|254282473|ref|ZP_04957441.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
 gi|219678676|gb|EED35025.1| dead/deah box helicase domain protein [gamma proteobacterium
           NOR51-B]
          Length = 433

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 198/386 (51%), Gaps = 3/386 (0%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     +  A+ ++GY   T +Q+  +   LR KDVL  AQTG+GKT  F      
Sbjct: 2   FFKDLGLSAELIRAVEKKGYSEATPIQQQAIPLVLRGKDVLAGAQTGTGKTAGFT-LPLL 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L    +    S P  L + PTRELA QV   +    A      AV  GGVS++ +++ 
Sbjct: 61  QQLQNLHKPGHKSFPRVLVLTPTRELAAQVQESVRDYGAFLPFRSAVIFGGVSINPQKQK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I+V TPGRL DH++ + ++++ ++ +VLDEAD MLD+GF  DI+ I+   PK+R
Sbjct: 121 LIRGVDIIVATPGRLLDHVQQRSVDLTRIETLVLDEADRMLDMGFIHDIKRIVKIIPKQR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LA  + +    + +  +N     +      V    +   +   + 
Sbjct: 181 QTLLFSATFSREIKGLAAEFLRSPEEIQVTPQNTATDLVTQVVYPVDKKRKRELLSQQIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  +  ++F  T+ S +R  + L +      A+ G  SQ  R+ AL   ++G  R  +A
Sbjct: 241 ENNWQQVLIFTRTKHSANRLAEQLDKDGITAAAIHGNKSQGARTRALADFKNGTIRALVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ EL +  E+ +HR GRT RAG++G ++ ++  +  +  + + 
Sbjct: 301 TDIAARGIDIQKLPHVVNFELPNTAEDYVHRIGRTARAGQEGSAISLVCVDELKLLKDIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRI 386
           +    ++     P  E      A+ I
Sbjct: 361 KLTGQNIEKVYLPGFEVDPTIKAEAI 386


>gi|195401282|ref|XP_002059243.1| GJ16136 [Drosophila virilis]
 gi|194156117|gb|EDW71301.1| GJ16136 [Drosophila virilis]
          Length = 523

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/395 (29%), Positives = 212/395 (53%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  E  +   + +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 71  LNDTLCKACEELKWKAPSKIQKEAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 130

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R+       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 131 QRY------FALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPH 184

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+   KG N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 185 IIIATPGRLVDHLENLKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 244

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 245 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVDQLQQYYIFIPVKYKDVYLVHILNELAGN 304

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 305 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVAS 364

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+ +    
Sbjct: 365 RGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGQAITMVTQYDIELYQRIEQLLGK 424

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +         V A++ER A+      L L  ++ 
Sbjct: 425 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLED 459


>gi|320158915|ref|YP_004191293.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
 gi|319934227|gb|ADV89090.1| ATP-dependent RNA helicase RhlE [Vibrio vulnificus MO6-24/O]
          Length = 509

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 186/380 (48%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+ 
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 67  PRV-RANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ ++LDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYSQNAVKFDQLEVLILDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + + +++   N     ++       +  +   +  ++     + 
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLINDGDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++           ERL +E 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFAIERLIQEL 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
                 E      A+ E   
Sbjct: 366 LPRKALEGYAPTNAVPESKL 385


>gi|308502005|ref|XP_003113187.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
 gi|308265488|gb|EFP09441.1| hypothetical protein CRE_25313 [Caenorhabditis remanei]
          Length = 506

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 128/430 (29%), Positives = 227/430 (52%), Gaps = 29/430 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   Q + +A    G++  + +Q+A L   L+ KDV+  A+TGSGKT AF + + 
Sbjct: 54  KTFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 113

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL     F        L + PTRELA Q+G++ E L +  G++ AV +GGV +  +  
Sbjct: 114 QSLLDHPQAF------FCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAM 167

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      N+  LK +++DEAD +L++ F  +++ IL   PK
Sbjct: 168 ALARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPK 227

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  ++ L +   +D  RV++++  +   ++    + +    ++  +V +
Sbjct: 228 ERRTYLFSATMTKKVSKLERASLRDPARVSVSTRYKTVDNLKQHYIFIPNKYKETYLVYL 287

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN------------A 286
           L  H   +AIVFC+T A+  +   +L +   Q V L G++SQ                 +
Sbjct: 288 LNEHAGNSAIVFCATCATAMQIAVMLRQLGMQAVPLHGQMSQVRFERPLQVGSLEKRLGS 347

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   +     + + TDVAARG+D+P +++VI+ ++ S  ++ +HR GRT RAGR G+++ 
Sbjct: 348 LNKFKSKARDILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAIT 407

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVE----AIRERDAQRILQDPLFLDSIQGDEKK 402
           V+ Q      +++  EAN+    +    VE     + ER  + +  +   ++  + DEK+
Sbjct: 408 VVTQYDVEGYQKI--EANLGKKLDEYKCVENEVMVLVERTQEAL--ENAKVEMKEMDEKR 463

Query: 403 MVDVLLAKHD 412
                  ++D
Sbjct: 464 KSGKKRRQND 473


>gi|225463593|ref|XP_002271370.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]
          Length = 543

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 197/400 (49%), Gaps = 21/400 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 97  IKNFKDMRFPEPILKNLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 156

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E       P   P  L I P+RELA Q    +E             +   +CIG
Sbjct: 157 IMVALQEEVSMPIVPGEGPFGLVICPSRELARQTYEVVEQFLVPMRECGYPELRPLLCIG 216

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HI+V TPGRL D +  K LN+ + + + LDEAD ++DLGF DDI 
Sbjct: 217 GVDMRSQLEVVKKGVHIIVATPGRLKDMLAKKKLNLDNCRYLTLDEADRLVDLGFEDDIR 276

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 277 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 336

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 337 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 395

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 396 KAGKKDVLVATDVASKGLDFPDIKHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 455

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAIRE 380
           N         + L +EA   +        +P   V+AI +
Sbjct: 456 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDVDAITD 495


>gi|224083374|ref|XP_002307002.1| predicted protein [Populus trichocarpa]
 gi|222856451|gb|EEE93998.1| predicted protein [Populus trichocarpa]
          Length = 895

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 202/449 (44%), Gaps = 22/449 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E + +  Y    ++Q   L   +  +D +  A+TGSGKT+AF L +   +  +     
Sbjct: 266 ILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVE 324

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 325 AGEGPIGLIMAPTRELVQQIHSDIRKFTKALGIRCVPVYGGSGVAQQISELKRGTEIVVC 384

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +     + ++FSA
Sbjct: 385 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDHQTVLFSA 444

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI+    +    +R   ++ +L     K  
Sbjct: 445 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDINQLVEVRPEGERWFRLLELLGVWSEKGK 504

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  ++       + L +     ++L G   Q +R + +   +     + IAT VAAR
Sbjct: 505 ILVFVQSQDKCDALFRDLLKFGHPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 564

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DLELVI+ ++ ++ E+ +HR GRTGRAGRKG ++    ++  R A  L +   +S
Sbjct: 565 GLDVKDLELVINYDVPNHYEDYVHRVGRTGRAGRKGCAITFFSEDDARYAPDLVKALELS 624

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD-------VLLAKHDPEKIAAG 419
                    E +  +D  + L D   +   QG E+               + D +++AA 
Sbjct: 625 ---------EQVVPQDL-KALADGFMVKVNQGLEQAHGTGYGGSGFKFNEEEDEKRMAAK 674

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
             +    G    +  +       R    D
Sbjct: 675 KAQAREYGFEEEKSDSEDEDEVVRKAGGD 703


>gi|331217131|ref|XP_003321244.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300234|gb|EFP76825.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 547

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 197/373 (52%), Gaps = 4/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   + +Q       L  +DV+  + TGSGKT+AF +     + A+ 
Sbjct: 120 FPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMIHINAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 179 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTRGAE 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ I++     R+ LMFS
Sbjct: 239 IVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA  Y KD ++VN+ S +   + +I     + +  ++   ++  L    ++
Sbjct: 299 ATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLIKHLEKISSE 358

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +A  ++F  T+      TK L +  +  +A+ G+  QQER   L+  + GR+ + IATDV
Sbjct: 359 SAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  VI+ ++ +  E+ +HR GRTGRAGR G +   I  +  + A+ L +  
Sbjct: 419 ASRGLDVKDIAYVINYDMPNGIEDYIHRIGRTGRAGRTGTAYSYISADQSKLAKELVKIL 478

Query: 364 NVSVVWEPAPSVE 376
             +    P+  VE
Sbjct: 479 RDAKQIVPSALVE 491


>gi|197284022|ref|YP_002149894.1| ATP-dependent RNA helicase DbpA [Proteus mirabilis HI4320]
 gi|194681509|emb|CAR40383.1| ATP-independent RNA helicase [Proteus mirabilis HI4320]
          Length = 457

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P      L+E GY+ +T VQEA L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A+           +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQRIDAKQFN------TQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   + AHI+V TPGRL DH+  + + ++ +K +VLDEAD MLD+GF DDI  I+   
Sbjct: 115 QRDSLIHAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQM 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT    I  +++  Q+D V + I S +   +       +         + 
Sbjct: 175 STQRQTLLFSATWPDEIAKISRKIQQDPVTIEINSPDELPAVEQQFYEISRYGK-LGLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L +H   + +VFC+T+       + L E    V+AL G++ Q+ER   L    +G  R
Sbjct: 234 KLLSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++         RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    N+ + W+ APS
Sbjct: 354 NALEEMLNIKLDWQSAPS 371



 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV      HDPE       R  RAG        CAPEEI   + +      + D ++  
Sbjct: 311 EMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANALEEMLNIKLDWQSAP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G + + IG I + P   +V V 
Sbjct: 371 SGLSITPLVATMATLCIDGGKKAKMRPGDILGALTGDLGFSGEDIGKINIHPTHAYVAVK 430

Query: 515 ADGVDLLRRTVKLDK 529
                 + ++++  K
Sbjct: 431 QSIAKQVWKSLQQGK 445


>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 442

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/417 (31%), Positives = 224/417 (53%), Gaps = 5/417 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F++      I E +S+ GY   T +Q     P L  +D++ +AQTG+GKT AF L + 
Sbjct: 4   KNFKDFGFHSKILENISKTGYEYATPIQALSFEPILEGRDIMGAAQTGTGKTAAFTLPIL 63

Query: 60  STLLAE-NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + L+ + N   SPA  P+  L + PTRELA Q+ + +        +  ++  GGV ++ +
Sbjct: 64  NRLIPKANYSTSPAKHPVRMLVLTPTRELAEQISKNVNLYSDGLPLKCSLIYGGVDINSQ 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +++L  GA IV+ TPGRL DHI  + +N++ ++ +VLDEAD MLD+GF  D+  IL + P
Sbjct: 124 KQELMRGADIVIATPGRLLDHIEQRTVNLTQVEFLVLDEADRMLDMGFMPDLLRILSNLP 183

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L++SAT S  I +LA+ +  + V + +AS N   S I      V+ SD++ A+V 
Sbjct: 184 KSRQSLLYSATFSENIRSLAQKFLNNPVEITVASNNSTASTIKQEVYSVSESDKNAALVY 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL      N I+F + + +     ++L  +   V +L G+ SQ ER+ AL + +  +  +
Sbjct: 244 ILTSRAFNNVIIFSNRKVTCKNLERLLNNYDLAVQSLHGDKSQLERTKALDLFKSSKCNI 303

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ EL    E+ +HR GRTGRAG+KG+++ +      +   
Sbjct: 304 LVATDVAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGKKGIAISLCSSEEGKSLS 363

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +     +        S+  + +      ++  L     +  + K         + +
Sbjct: 364 EIETLTGLKFQKLSL-SIPDVFKNGVSHNMKTSLASIKAEYSKNKFFYQPYEDEESD 419


>gi|195453762|ref|XP_002073931.1| GK14378 [Drosophila willistoni]
 gi|194170016|gb|EDW84917.1| GK14378 [Drosophila willistoni]
          Length = 683

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/393 (29%), Positives = 190/393 (48%), Gaps = 8/393 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE + ++G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 265 QCFAEYPDLLGE-IQKQGFSKPSPIQAQAWPILLQGLDMIGIAQTGTGKTLAFLLPGMIH 323

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E+   Y+   +      GG     +  D+
Sbjct: 324 TEYQSTPRGQRGGANVLVLAPTRELALQIEMEVNK-YSFRNMRAVCVYGGGCRKMQISDV 382

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++ K +++S +  +VLDEAD MLD+GF   I  IL   P  R+
Sbjct: 383 ERGAEIIICTPGRLNDLVQAKVIDVSTITYLVLDEADRMLDMGFEPQIRKILLDIPPNRQ 442

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NI 238
            +M SAT  P +  LA +Y  + + V + S +   +    + V     D++        I
Sbjct: 443 TIMTSATWPPGVRRLANSYMTNPIEVCVGSLDLAATHSVKQIVQFLEDDKEKYRTIKSFI 502

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                +   I+FC  +A     +  L    F    + G   Q +R  A+  ++ G   + 
Sbjct: 503 KNMGESDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQNDREQAIADIKSGVVHIL 562

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I +     A  
Sbjct: 563 VATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAHE 622

Query: 359 LFR---EANVSVVWEPAPSVEAIRERDAQRILQ 388
           L +   EA+  V+ E        +    +R  +
Sbjct: 623 LIKILEEADQEVLPELVKMASRFKAMKEKRAAE 655


>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
           [Acyrthosiphon pisum]
          Length = 551

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 180/372 (48%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +   G+   T +Q       +  K+++  AQTGSGKT+ + L     +  +
Sbjct: 143 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVHINNQ 202

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +        T +      GG     + RDL NG 
Sbjct: 203 EP-LKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNGV 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM+
Sbjct: 262 EIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMW 321

Query: 186 SATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA ++  D +++N      S N                D+   ++  +  
Sbjct: 322 SATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIAN 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T+ +     + V + G+ SQ ER + L+  R GRA + +AT
Sbjct: 382 MEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVAT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ +KG S      +  ++A+ L  
Sbjct: 442 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLVA 501

Query: 360 -FREANVSVVWE 370
              EAN  +  +
Sbjct: 502 VLTEANQRIDPK 513


>gi|145245621|ref|XP_001395078.1| ATP-dependent RNA helicase dhh1 [Aspergillus niger CBS 513.88]
 gi|142981121|sp|A2QY39|DHH1_ASPNC RecName: Full=ATP-dependent RNA helicase dhh1
 gi|134079784|emb|CAK40919.1| unnamed protein product [Aspergillus niger]
          Length = 505

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q     + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|157118999|ref|XP_001659287.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875497|gb|EAT39722.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 439

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 177/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 51  FEEFCLKRELLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLEQ 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 111 IDPTKDYI------QALIIVPTRELALQTSQICIELAKHMHIRVMVTTGGTNLKDDIMRI 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  +  N+++ + +VLDEAD++L   F+  ++ ++   PK+R+
Sbjct: 165 YQKVQVIIATPGRILDLMDKEVANMANCRMLVLDEADKLLSQDFKGMLDHVIMKLPKERQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    + + ++   +N+  E             V    + + +  +   
Sbjct: 225 ILLFSATFPLSVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R G  R  + +
Sbjct: 284 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMQQAHRNRVFHDFRSGLCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 344 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 403

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 404 ELGTEI--KPIPKV 415


>gi|77457664|ref|YP_347169.1| DEAD/DEAH box helicase-like [Pseudomonas fluorescens Pf0-1]
 gi|77381667|gb|ABA73180.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 446

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 186/372 (50%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L + PTRELA Q  +E+E     T +   +  GG     +   L+    
Sbjct: 64  GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D++ ++D  P +++ ++FS
Sbjct: 124 ILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   +     +AK           A      +             ++  +  +L     
Sbjct: 184 ATTGGSGLREMIAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TRA   R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATDVA
Sbjct: 244 QKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRTIKEVK 375


>gi|241949195|ref|XP_002417320.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223640658|emb|CAX44953.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 543

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 174/373 (46%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G    V  GG S+  +  
Sbjct: 90  QLVKPKLNKV------QALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIV 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  HI+VGTPGR+ D    K +++S     V+DEAD+ML   F+  IE IL+  P  
Sbjct: 144 RLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPN 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQALLFSATFPLAVKSFMDKHLTKPYEINLMDELTLKGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKI 382

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 383 EQELGTEIKPIPA 395


>gi|68474158|ref|XP_718788.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
 gi|68474329|ref|XP_718704.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|74656470|sp|Q5AAW3|DHH1_CANAL RecName: Full=ATP-dependent RNA helicase DHH1
 gi|46440487|gb|EAK99792.1| hypothetical protein CaO19.13577 [Candida albicans SC5314]
 gi|46440576|gb|EAK99880.1| hypothetical protein CaO19.6197 [Candida albicans SC5314]
          Length = 549

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 174/373 (46%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G    V  GG S+  +  
Sbjct: 90  QLVKPKLNKV------QALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIV 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  HI+VGTPGR+ D    K +++S     V+DEAD+ML   F+  IE IL+  P  
Sbjct: 144 RLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPN 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQALLFSATFPLAVKSFMDKHLTKPYEINLMDELTLKGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKI 382

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 383 EQELGTEIKPIPA 395


>gi|5059030|gb|AAD38876.1|AF110008_1 p68 RNA helicase [Molgula occulta]
          Length = 619

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   L+ +G+   T +Q       +   D +  A+TGSGKT+ F L     + A+ 
Sbjct: 156 FPDYIYGTLNXQGFSEPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLGFILPAIVHINAQ- 214

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L + PTRELA QV +      + + +      GG S   + RDL+ G  
Sbjct: 215 PYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGSSSHIKNTCVYGGASKGPQLRDLERGCE 274

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  K  N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 275 IVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMWS 334

Query: 187 ATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +    +            ++    + +I     +    ++D  ++ ++     +
Sbjct: 335 ATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRLMEEIMGE 394

Query: 246 ---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ SQ ER   L   R GR+ + +ATD
Sbjct: 395 SENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRSPILVATD 454

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---L 359
           VA+RG+D+ D++ VI+ +  S  E+ +HR GRT RA +KG +      +  ++A+    +
Sbjct: 455 VASRGLDVHDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQAKDLVGI 514

Query: 360 FREANVSVVWE 370
            +EA  +V  +
Sbjct: 515 LQEAKQAVNPK 525


>gi|322696164|gb|EFY87960.1| ATP-dependent RNA helicase DED1 [Metarhizium acridum CQMa 102]
          Length = 666

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S      
Sbjct: 189 LDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFING 248

Query: 67  DRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               PA+A           P +L +APTREL  Q+  E      ++ V   V  GG  + 
Sbjct: 249 PSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIG 308

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--- 172
            + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I   
Sbjct: 309 SQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEG 368

Query: 173 -LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    I  LA+++ KD V +++        +I  +   V   D+
Sbjct: 369 EDMPPVADRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDK 428

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  AL+  R
Sbjct: 429 RSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFR 488

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     + 
Sbjct: 489 NGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG 548

Query: 352 MQ---RRAERLFREANVSVVWEPAPSVEAI 378
            +   R    L +EAN  V     P +EAI
Sbjct: 549 NRGIVRELMELLKEANQEVP----PFLEAI 574


>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 421

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 190/378 (50%), Gaps = 8/378 (2%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE++   PQ+I  AL++   V  T +Q+ +L   +  +D+L SA TG+GKT+AF L    
Sbjct: 3   FESLDLDPQLIV-ALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R         L + PTRELA QV ++ + L A T   V++  GGV        
Sbjct: 62  HLLDFPRR--ELGPGRVLILTPTRELASQVFQQAKMLAAYTDHKVSMVTGGVDYALHAEV 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   IV+ TPGRL ++IR      + ++ ++LDEAD MLD+GF DD++ I +   +++
Sbjct: 120 LKNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRMLDMGFYDDVKRITNEMTRRQ 179

Query: 181 RMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT           +   +        S   +     +   +   + +   +V+ 
Sbjct: 180 QTMLFSATLEGRGIDRFAEELLNEPVEFTANPSRREKAKIHQFMHHVDNHAHKQALLVHW 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      +IVF  TR  ++     L         L GE+ Q +R+ +L   ++ + +V 
Sbjct: 240 LRDESTTRSIVFVKTRERLAELVSYLQSQDIPCAYLRGEMDQAKRTRSLNQFKNDKVKVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGID+ D+  V + +L  + E  +HR GRT RAG+KG ++ ++  +  R   +
Sbjct: 300 IATDVAARGIDVQDVSHVFNFDLPRSAEIYVHRIGRTARAGKKGTAISLVEAHDLRIFGK 359

Query: 359 LFREANVSVVWEPAPSVE 376
           + R    ++       ++
Sbjct: 360 IERYTEETIKRRVIQDLK 377


>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
          Length = 408

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     +     +   D   ++     R+   I          +   A++ 
Sbjct: 180 RKQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  + A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 DIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|42521946|ref|NP_967326.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574476|emb|CAE77980.1| putative ATP-dependent RNA helicase [Bdellovibrio bacteriovorus
           HD100]
          Length = 412

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/386 (34%), Positives = 199/386 (51%), Gaps = 9/386 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  ++ + +   L++ G+   T +Q   +   L+ +DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FEKFHLSEDLLRNLTDNGFFRTTDIQYKAIPSILKGEDVLAIAQTGTGKTAAFAIPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  E      A     L + PTRELA Q+G     L   T V      GGV    + 
Sbjct: 60  INMIHTEKSS-KRAIGIKCLILVPTRELAQQIGEVFNKLSKHTKVKPFALFGGVEQDAQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ+G  I++ TPGR+ D I    ++IS ++ +VLDEAD MLDLGF DDI  +     K
Sbjct: 119 QKLQDGIDILISTPGRMFDLIAQGHVDISRIETLVLDEADHMLDLGFIDDITSVKRKLTK 178

Query: 179 KRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + + L FSATI+P I        +  A+R+ I+ E+    +I +  + V + D+   +  
Sbjct: 179 RHQTLFFSATINPEIKKLAFSQVRSSAIRIQISPEDPVSKNITHFVMHVEMDDKRFFLAE 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            LR +     I+F  TR    R  K LA    Q + L GE  Q +R+  ++  R G  ++
Sbjct: 239 YLRQNPDGKFIIFVRTRVRAERVAKALARVEVQSLTLHGEKDQTDRAEVMKTFRKGDCKI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---R 354
            IATD++ARGID+PD+  VI+ +L   PEN +HR GRTGR   KG++V       +    
Sbjct: 299 LIATDLSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGVAVSFCSTEEKPLLA 358

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380
             E L  +  + V+       +AI E
Sbjct: 359 EVESLITK-KIEVLKVSKQDYKAIVE 383


>gi|2500521|sp|Q40468|IF415_TOBAC RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15;
           AltName: Full=ATP-dependent RNA helicase eIF4A-15
 gi|485945|emb|CAA55739.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 189/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E 
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYE- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----LLECQALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|46138553|ref|XP_390967.1| hypothetical protein FG10791.1 [Gibberella zeae PH-1]
 gi|91206578|sp|Q4HW67|DHH1_GIBZE RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 486

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 170/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 44  FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLER 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 104 INPKISKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 158 QDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 218 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 277 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLVCS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 337 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 396

Query: 362 EANVSVVWEPA 372
           +    +   PA
Sbjct: 397 DLGTEIQPIPA 407


>gi|332969729|gb|EGK08743.1| ATP-dependent RNA helicase RhlE [Kingella kingae ATCC 23330]
          Length = 484

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 206/385 (53%), Gaps = 7/385 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   Q I  ALSE+GY   T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 29  MTQFSQLGLGQEIVSALSEQGYETPTPIQLAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 88

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L    N   SPA  P+  L + PTRELA Q+ +  +       +   V  GGVS+ +
Sbjct: 89  LERLKRYANASTSPAMHPMRMLVLTPTRELADQIDQNTKSYIKNLPLRHTVLFGGVSMDK 148

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL+ G  IVV T GRL DH++ K +N++ ++ VVLDEAD MLD+GF D+I  I+   
Sbjct: 149 QTADLRAGCEIVVATVGRLLDHVKQKNINLNKVEIVVLDEADRMLDMGFVDEIRQIMRLL 208

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT +P I  LA+++      + +A++N  +++++   + V    +   + 
Sbjct: 209 PKSRQTLLFSATFAPDIRKLAQDFMHLPETIEVAAQNTTNANVEQHVIAVDAHRKKELLE 268

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ S  +  + L        A+ G+ SQQ R   L   + G  R
Sbjct: 269 RLIVDLNMPQVIVFCKTKQSAEQVARDLLRRGLSANAIHGDKSQQTRLEVLSQFKSGELR 328

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  VI+ EL    E+ +HR GRTGRAG +G+++ ++ +  Q+  
Sbjct: 329 VLVATDVAARGLDIAELPFVINYELPVQAEDYVHRIGRTGRAGAEGVAISMMDETEQKMY 388

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
             +       +   P   +E    R
Sbjct: 389 ASIQELIGAQL---PVSRIEGFEPR 410


>gi|312377194|gb|EFR24088.1| hypothetical protein AND_11577 [Anopheles darlingi]
          Length = 415

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 175/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 13  FEEFCLKRPLLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLEQ 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 73  VDPTKDYI------QALIIVPTRELALQTSQICIELAKHMNIRVMVTTGGTNLKDDIMRI 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  +  N+S  + +VLDEAD++L   F+  ++ ++   PK+R+
Sbjct: 127 YQKVQVIIATPGRILDLMDKEVANMSQCRMLVLDEADKLLSQDFKGMLDHVIMRLPKERQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    + + +D   +N+  E             V    + + +  +   
Sbjct: 187 ILLFSATFPLSVKNFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   + Q  R+      R G  R  + +
Sbjct: 246 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHARMQQAHRNRVFHDFRSGLCRNLVCS 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 306 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 365

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 366 ELGTEI--KPIPKV 377


>gi|257815096|gb|ACV69940.1| vasa [Osphronemus goramy]
          Length = 653

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 181/366 (49%), Gaps = 10/366 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 219 TFDEAALCETLRKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 278

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+     RFS    P AL +APTREL  Q+  E       T V   V  GGVS   +
Sbjct: 279 QLMADGVAASRFSELQEPEALIVAPTRELINQIYLEARKFSFGTCVRPVVVYGGVSTAHQ 338

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
            R++  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+        
Sbjct: 339 IREISRGCNVLCGTPGRLLDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGSPG 398

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S   ++ ++  +          A   + D + + +       SD++   V V    + 
Sbjct: 399 MPSKENRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFSKR 458

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 459 EQLLDLLKTTGTERTMVFVETKRQADFIATFLCQEKVPTTSIHGDREQREREQALADFRS 518

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+PD++ V++ +L SN +  +HR GRTGR G  G +V       
Sbjct: 519 GKCPVLVATSVAARGLDIPDVQHVVNFDLPSNIDEYVHRIGRTGRCGNTGRAVSFYDPEA 578

Query: 353 QRRAER 358
                R
Sbjct: 579 DGHLAR 584


>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
 gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
          Length = 408

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     +     +   D   ++     R+   I          +   A++ 
Sbjct: 180 RKQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  + A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 DIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|313675971|ref|YP_004053967.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312942669|gb|ADR21859.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 439

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/411 (27%), Positives = 191/411 (46%), Gaps = 19/411 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ + GY   + +Q   +   L   DV+  AQTG+GKT AF L L   L    
Sbjct: 13  LNKQLFNAIDDLGYQKPSEIQVKAIPRILNGHDVIGIAQTGTGKTAAFVLPLLMKL---- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +++    P AL IAPTREL +QV   +  L   T +      GG+   ++ +++  G  
Sbjct: 69  -KYAQGHDPRALIIAPTRELVMQVYENILELGKYTDLRTVCLYGGIGPKKQAQEVAEGCD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D      L    +K  +LDEAD M+D+GF   I  +L+  P K++ L FS
Sbjct: 128 IIVATPGRLLDIYSAGVLQPKQIKTFILDEADRMMDMGFMPQIRRVLELLPMKKQNLFFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAK 245
           AT    +   A  +     +V +  E      I+     +     + N +  +       
Sbjct: 188 ATFPEKVEKYAYEFTDFPEKVEVTPETMTAELIEQSLYHVPNFLTKINLLKYLFENEDFS 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             ++F  TR + +     +   + + V  +    +Q  R NA+   + G  RV ++TDV 
Sbjct: 248 RVLIFVRTRKNANNVYSFIERKISEEVRVIHANKAQSTRINAINEFKSGNVRVLVSTDVT 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--E 362
           ARGID+ ++  VI+ E+ +  E+ +HR GRTGRA   G+++  +  +      ++    +
Sbjct: 308 ARGIDVEEVSHVINFEVPNKYEDYVHRIGRTGRAEHHGIAISFVDPSDVYHINKIEELIQ 367

Query: 363 ANVSVVWEP--------APSVEAIRER--DAQRILQDPLFLDSIQGDEKKM 403
             + V+  P         PS +   E+  D Q+ L++P F  +    +KK 
Sbjct: 368 KKIKVIDLPKEIELMDTLPSEKKDMEQEIDRQKHLENPDFQGAFHEKKKKN 418


>gi|257454198|ref|ZP_05619468.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
 gi|257448371|gb|EEV23344.1| cold-shock DEAD box protein A homolog [Enhydrobacter aerosaccus
           SK60]
          Length = 777

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 143/582 (24%), Positives = 239/582 (41%), Gaps = 51/582 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +++   GY   T +Q   +   L  +D+L+SAQTGSGKT AF L +   L    
Sbjct: 76  LSGSLLKSIVATGYTTPTPIQARAIPAALEGRDLLLSAQTGSGKTAAFVLPILHQLSELQ 135

Query: 67  DR-------------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGV 112
            +                     AL + PTRELA QV   +    +    + +V  +GG 
Sbjct: 136 AKEKAAEKTASGKRGRQQPKVVQALILTPTRELANQVQDSIRKYGSAMKDLYSVPLVGGA 195

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +   + R L+ G  I+V TPGRL DHI  + +N+S L  +VLDEAD MLD+GF DDI  I
Sbjct: 196 AYSGQIRALKKGVQIIVATPGRLLDHINAQRVNLSDLTMLVLDEADRMLDMGFADDINAI 255

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L+++P  R+ +M SAT    +  +A+++ KD  R+NI  E     +  Y        ++ 
Sbjct: 256 LEATPAHRQTIMSSATWDGPVGKIAESFTKDPERINIKVETAHIDEKVYFCDNFDHKNKL 315

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +          AI+F +T+ S     + L +   +   L G+L Q +R+  +  +R 
Sbjct: 316 LEQLICDPER--GQAIIFTATKRSSEEVAERLQQWDHKACYLHGDLPQSKRNRIVSDLRS 373

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + +ATDVAARG+DLP++  V + +L    E+ +HR GR+GRAGR G+++ +  ++ 
Sbjct: 374 GKFDIVVATDVAARGLDLPNITHVFNYDLPRQVEDYVHRIGRSGRAGRTGIAINLCSRDD 433

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +R+   + R     +       +E             P F++  +G  K        +  
Sbjct: 434 RRQFGNIARYLKRDINEAQVEGLE-------------PRFVEKFEGRGKPNGRDGRGRGR 480

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWFSL 471
                         G  +          S   RF D  R       G   +   S+ F  
Sbjct: 481 SGS--DSRGGRDDRGSRSQRFAGSSDRPSSERRFADKPRFDNQERYGKPASNDSSARFE- 537

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
               +++ +            G +    G      D +         D            
Sbjct: 538 ---KRERFDKGH--------QGNSDSRFGR----DDASA---PRRHRDSDNHHGNSQGDF 579

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                  +KP+F      G +     + A +R    +  +K+
Sbjct: 580 HRAAKSSDKPNFDRDSRQGNREPRQGEYADRRRDDNRSFNKD 621


>gi|118783118|ref|XP_312776.3| AGAP003089-PA [Anopheles gambiae str. PEST]
 gi|116129059|gb|EAA08469.4| AGAP003089-PA [Anopheles gambiae str. PEST]
          Length = 400

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 196/373 (52%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++  ++    
Sbjct: 34  LREELLRGIYAYGFEKPSAIQQRSIQPIVKGRDVIAQAQSGTGKTATFSISILQSMD--- 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +       L ++PTRELAVQ+ + +  L     V    CIGG ++  + R L  G H
Sbjct: 91  ---TTLRETQVLCLSPTRELAVQIQKVILALGDFMNVQCHACIGGTNLGEDIRKLDYGQH 147

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P   ++++ S
Sbjct: 148 VVSGTPGRVFDMIKRRVLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 207

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D +R+ +  +      I    V +     + + + ++       
Sbjct: 208 ATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 267

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V   T+ + E  F V ++ G++ Q+ER   ++  R G++RV I TDV A
Sbjct: 268 QAVIFCNTRRKVDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRSGQSRVLITTDVWA 327

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  + 
Sbjct: 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 387

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 388 QIDEMPMNVADLI 400


>gi|37676819|ref|NP_937215.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201363|dbj|BAC97185.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 509

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 187/380 (49%), Gaps = 5/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ E+GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L A+ 
Sbjct: 8   LSAPILKAIQEKGYDTPSPIQLQAIPAILEGKDVMAAAQTGTGKTAGFTLPILERL-AKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ GA 
Sbjct: 67  PRV-RANHIRALILTPTRELAAQVQENVFMYSRHLDLNSAVVFGGVKINPQMLRLRKGAD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 126 VLVATPGRLMDLYSQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPAKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    + + +++   N     ++       +  +   +  +++    + 
Sbjct: 186 ATFSDEIRELAKGLVNNPIEISVNPANSTARTVEQCIYPADVKKKPAMLAKLIKDGDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFTRTKHGANRLAAFLTDQGLTAAAIHGNKSQGARTKALADFKSGDVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREA 363
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++           ERL +E 
Sbjct: 306 GIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGETGKAISLVCALEAPELFAIERLIQEL 365

Query: 364 NVSVVWEPAPSVEAIRERDA 383
                 E      A+ E   
Sbjct: 366 LPRKALEGYAPTNAVPESKL 385


>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
 gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
 gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
          Length = 421

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + +A+ E GY   T +Q   +   L  +DVL SA TG+GKT +F L  
Sbjct: 2   IRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S  +    L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQYLLDFPRKKSGPA--RMLILTPTRELAMQITEQARELAKYTSLNIFTITGGVMYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I G+  +   ++ +VLDEAD MLD+GF   ++ +      
Sbjct: 120 DILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEADRMLDMGFGPVVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     I    ++  K+   ++  S  R+   I         +     I+ 
Sbjct: 180 RKQTLLFSATLEGKGIEGFTEDLLKNPAEIDAKSSLRERKKITQWYHRADSAKHKLDILK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +I+F  TR  +      L       V + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITEQAERSIIFLKTRDRLGDLRAQLESAQIPCVWIQGEMPQDRRNNAISRFRDGSINV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   E
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAVSIIEAHDQLMIE 359

Query: 358 RLFREANVSVVW 369
           R+ R    ++  
Sbjct: 360 RVARYTEDAIKE 371


>gi|225454138|ref|XP_002270379.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|147785187|emb|CAN75439.1| hypothetical protein VITISV_000835 [Vitis vinifera]
          Length = 491

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 171/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 119 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 178

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 179 IDQDNNVI------QVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 232

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 233 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIHFMPLNRQ 292

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 293 ILLFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 351

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 352 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 411

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 412 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 471

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 472 ELGTEIKQIPPHIDQAI 488


>gi|317485296|ref|ZP_07944176.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
 gi|316923422|gb|EFV44628.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
          Length = 550

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 146/482 (30%), Positives = 235/482 (48%), Gaps = 17/482 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ++  A ++ G+ +L  VQ   L   L  +D++V ++TGSGKT  + L L + L   
Sbjct: 50  DLPQLLQTACAKAGWNSLMPVQSRALPYLLEGRDLMVQSRTGSGKTGTYLLPLMARLNPA 109

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   A  AL + PTRELAVQV +E + L+  +G  VA   GGV   ++   L+ G 
Sbjct: 110 MP------AVQALILVPTRELAVQVEQEAKTLFKGSGFTVAAVYGGVGYGKQMDALRQGV 163

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            +VVGTPGR+ DH+  + LN+ H+ A++ DEAD ML +GF  D++ I    P+     M 
Sbjct: 164 SVVVGTPGRVLDHLLRRTLNLDHISALIFDEADRMLSIGFYPDMKEIQRYLPETSIHAML 223

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  LA  +  D   +++++     +++ +        ++D  ++ IL     
Sbjct: 224 FSATYPPHVLKLAGEFLTDPQMLSLSTTQIHVAEVQHLYCECKSMEKDRTLIKILEVENP 283

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +AI+FC+T+A+V   T VL    F    LS +LSQ  R + L  +R G  R  +ATDVA
Sbjct: 284 ASAIIFCNTKATVHFVTAVLQGFGFNADELSADLSQSRREDVLSRLRKGTIRFLVATDVA 343

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P+L  V   E   + E+ +HR+GRTGRAG  G+ + ++    +   +R+ +   
Sbjct: 344 ARGIDIPELSHVFLYEPPDDRESYIHRAGRTGRAGAAGVVISLVDIMEKMELQRIAKYFK 403

Query: 365 VSVVWEPAPSVEAIRERDAQRI--LQDPLF--LDSIQGDEKKMVDVLLAK--HDPEK--I 416
           V +    AP+ E +      R+  L +  F  L+ ++ +  K  + L+     DPE+  +
Sbjct: 404 VPLTQHMAPTDEEVAHAVGMRVTALLEARFRQLNGLERERMKRFEPLVQSIAEDPEQRHL 463

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
               L         P    P                   GGG R   +         G +
Sbjct: 464 LTLLLDDCYQKSLNPTAFLPAGTPRKESEGAARPPKPHTGGGRRGPRENGP--RREGGRR 521

Query: 477 QK 478
           + 
Sbjct: 522 EG 523


>gi|221108213|ref|XP_002168355.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 480

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 124/406 (30%), Positives = 216/406 (53%), Gaps = 16/406 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +   E G    T +Q + +   L  +D + SA+TGSGKT AF L +   L  + 
Sbjct: 10  LHEWLNKQCLEMGISKPTEIQVSCIPEILSGRDCIGSAKTGSGKTAAFALPIIQKLSEDP 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+Q+  + + L    G+  AV IGG+ + ++  +L N  H
Sbjct: 70  ------YGIFALILTPTRELAIQIADQFKALGKSIGLNDAVIIGGLDMVKQGMELSNQPH 123

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL  HI      +++ +K +VLDEAD +L+  F +D+E I D+  KKR+ L+F
Sbjct: 124 VVIATPGRLASHITSGTKFSLNKIKFLVLDEADRLLEKSFENDLEVIFDNIAKKRQTLLF 183

Query: 186 SATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SATI+ AI       +      V    +    +++D R +L+    +D  +V++L+    
Sbjct: 184 SATITDAINHLKEVAHNPFCYEVKSEDDFATVTELDQRYLLIPSQVKDCYLVHLLQNFSE 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ I+F  T  S    + +L +  F+   L   +SQ+ER ++L   R G  ++ +ATDVA
Sbjct: 244 KSVIIFTQTCRSCQVISFMLRKVEFKCAGLHSVMSQRERLSSLGRFRSGHVKILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+P ++LVI+  + ++P++ +HR GRT RAGR GMS+ ++ Q    R + +     
Sbjct: 304 SRGLDIPLVQLVINYNVPASPKDYVHRVGRTARAGRGGMSLTLLTQFDIDRLKAIETFIG 363

Query: 365 VSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKK 402
           + +        +A++         R+ +  L D  F +  + +++K
Sbjct: 364 LKMKEFETNEDDAVKLLKPISIIRREVEIRLNDANFGEKKKNNKRK 409


>gi|194743932|ref|XP_001954452.1| GF16725 [Drosophila ananassae]
 gi|190627489|gb|EDV43013.1| GF16725 [Drosophila ananassae]
          Length = 693

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 185/375 (49%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + FE  P ++ E + ++G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 270 QCFEKYPDLLAE-VMKQGFSKPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 328

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++        P  L +APTRELA+Q+  E++  Y+   +      GG     +  D+
Sbjct: 329 TEYQSVPRGQRGGPNVLVLAPTRELALQIEMEVKK-YSFRNMRAVCVYGGGDRRMQISDV 387

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      R+
Sbjct: 388 ERGAEIIICTPGRLNDLVQANVINVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQ 447

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIVNI 238
            +M SAT  P +  LA++Y K+ ++V + S +   +    + +                +
Sbjct: 448 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIELLQDDAEKFQTIKSFV 507

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVFC  +A     +  L    F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 508 KNMRKTDKIIVFCGRKARADDLSSDLTLDGFCTQCIHGNRDQSDREQAIADIKSGAVRIL 567

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  + +     A+ 
Sbjct: 568 VATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFVTREDWGMAKE 627

Query: 358 --RLFREANVSVVWE 370
              + +EA   V  E
Sbjct: 628 LIDILQEAEQDVPPE 642


>gi|303271803|ref|XP_003055263.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463237|gb|EEH60515.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 394

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   L   G+   +++Q+  + P    +DV+  AQ+G+GK+    LAL
Sbjct: 20  VNTFDAMGIREDLLRGLYSYGFEKPSAIQQRAVMPICSGRDVIAQAQSGTGKSSMISLAL 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       +      AL ++PTRELA Q  +    L     V V  CIGG S+  + 
Sbjct: 80  CQMLD------TSTREVQALVLSPTRELATQTEKVALALGNFMSVQVHACIGGRSIGEDI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G HIV GTPGR+ D I+ + L   ++K ++LDEADEML+ GF++ I  +    P 
Sbjct: 134 RKLDHGVHIVSGTPGRVFDMIKRRNLRTRNIKTLILDEADEMLNKGFKEQIYDVYRYLPP 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 194 ETQVVLVSATLPVEVLEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 253

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 254 LYDTLTITQAVIFCNTKRKVDWLTEKMRANNFTVSAMHGDMPQKERDAIMGEFRGGTTRV 313

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R   
Sbjct: 314 LITTDVWARGIDVQQVSLVINYDLPNNRENYIHRIGRSGRYGRKGVAINFVKADDVRILR 373

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 374 DIEQYYSTQIDEMPMNVADLI 394


>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
           [Meleagris gallopavo]
          Length = 447

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 122/411 (29%), Positives = 209/411 (50%), Gaps = 11/411 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L +   LL    R
Sbjct: 28  DVLCEACDQLGWKIPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQR 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    HI+
Sbjct: 88  ------LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSMSQSLALAKKPHII 141

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +FSA
Sbjct: 142 IATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 201

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V IL      + 
Sbjct: 202 TMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSF 261

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+RG
Sbjct: 262 MVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 321

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+       +
Sbjct: 322 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIGKKL 381

Query: 368 VWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              P    E   ++ER A+   Q    ++  +  EKK           E +
Sbjct: 382 PAFPMQEEEVMMLQERVAE--AQRFARMELREQGEKKRSRNGDDDDTEEAL 430


>gi|66357412|ref|XP_625884.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226846|gb|EAK87812.1| Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|323510023|dbj|BAJ77905.1| cgd4_3000 [Cryptosporidium parvum]
          Length = 702

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 192/377 (50%), Gaps = 17/377 (4%)

Query: 1   MKIF---ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+ F   E I +++ + +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   
Sbjct: 199 MQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 258

Query: 58  LASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           +   +L +    +P  +         P+AL ++PTRELA+Q   E       TG+   V 
Sbjct: 259 IVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVL 318

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  V  +  DL  G+ I+V TPGRL D I    +N+  +K ++LDEAD MLD+GF   
Sbjct: 319 YGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQ 378

Query: 169 IEFILDSSPKKR-----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           I  I++ S         + +MFSAT    I  LAK++  + + + +         I  R 
Sbjct: 379 IREIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRV 438

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           V      +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER
Sbjct: 439 VYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQER 498

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL++ R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G+
Sbjct: 499 EHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGL 558

Query: 344 SVFVIPQNMQRRAERLF 360
           +   + ++ +     L 
Sbjct: 559 ATSFVNESNKPILRDLL 575


>gi|308485730|ref|XP_003105063.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
 gi|308257008|gb|EFP00961.1| hypothetical protein CRE_20763 [Caenorhabditis remanei]
          Length = 401

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 199/381 (52%), Gaps = 11/381 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 27  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 87  TLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 141 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + ++++ 
Sbjct: 201 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLIDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q++R   ++  R G  RV I
Sbjct: 261 DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLI 320

Query: 300 ATDVAARGIDLPDLELV--IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           +TDV ARG+D+P + LV  I+ +L +N E  +HR GR+GR GRKG+++  + Q+  R   
Sbjct: 321 STDVWARGLDVPQVSLVSVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILR 380

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 381 DIEQYYSTQIDEMPMNIADII 401


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040059|gb|ACT56855.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 209/432 (48%), Gaps = 17/432 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + GYV  T +Q   +   L+  DV   AQTG+GKT +F L + + L    
Sbjct: 8   LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV    E       + VA+ IGG+    + + L+ GA 
Sbjct: 68  ARV---RMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGAD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGR+ DH     L +++++ +V+DEAD MLD+GF   I+ I    P  R+ L+FS
Sbjct: 125 VLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRYHG 243
           AT++  +  +++N+ ++  R+ + + +     I++                   +     
Sbjct: 185 ATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDT 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KN I+FC+ + +V      L +  F V A+ G + Q+ R   L   ++G  ++ +A+D+
Sbjct: 245 MKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDL 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+PD+  V + ++ +  EN +HR GRTGRAGR G +  ++ +   +  + + +  
Sbjct: 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLI 364

Query: 364 NVSVVW---------EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              V W          P   ++  +   A++   +P+   S   D +K        H P 
Sbjct: 365 EKKVDWLNGDLSSLNPPLEKIDIAQHNHARK--NNPIPQKSTGFDRRKKNYSSQKSHIPL 422

Query: 415 KIAAGFLRIHRA 426
           K +    ++ + 
Sbjct: 423 KESEKISKLQQD 434


>gi|153005404|ref|YP_001379729.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028977|gb|ABS26745.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 680

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 136/459 (29%), Positives = 214/459 (46%), Gaps = 9/459 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E GY   T VQ +   P    KDV+V ++TG+GKT AF + +   +    
Sbjct: 27  LSEPVRRAIAEHGYERPTPVQVSTFRPVRDGKDVIVRSKTGTGKTAAFAIPILERIADGR 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P AL + PTRELA+QV +E   L     + V    GG S+  + + L+ GA 
Sbjct: 87  RR------PSALVMCPTRELAIQVAQEFTALAKHRDLSVVAVYGGASMGEQLQKLEAGAE 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ DHIR + L +       LDEADEML++GF +++  ILD+ PK  + L+FS
Sbjct: 141 IIVGTPGRIYDHIRRRTLKLDETMVCCLDEADEMLNMGFFEEVTRILDNLPKDCQQLLFS 200

Query: 187 ATISPAITTLAKNYQKDAVRVN-IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+   I  + ++Y  D   +     E    +  +     V    +   ++ ++     +
Sbjct: 201 ATVPADIEQIIRDYLTDPETILLSGDEYSVENIHNVMYPAVDAYPKPRNLLYMIEMEEPE 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVFC+TR   S    VL  + +    L+G+L Q+ER   +  ++ G  R  +ATD+AA
Sbjct: 261 TAIVFCNTRNDTSLVAAVLNRNGYDAELLNGDLPQKERERVMAKVKRGEVRFMVATDIAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+  L  +P   LHR GRTGR G+KG S+ ++          L ++  +
Sbjct: 321 RGIDISDLTHVINYSLPEDPAVFLHRVGRTGRIGKKGTSLSIVSGAEIHTLTALQKKFGI 380

Query: 366 SVVWEPAPSVEAIRERDAQR--ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
           +   +  P+ +  R     R  +        SI      +   L  + D E + A  L+ 
Sbjct: 381 AFEEKKLPTPDEARRLWTDRHVVELKDAMSASIFEAFIPLSQELRNRPDGEYLVAFALKY 440

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                              R+      +      G R  
Sbjct: 441 FFTHHRMERAQDREKAEHKREEHERREKGEVKREGGRRE 479


>gi|226944026|ref|YP_002799099.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
 gi|226718953|gb|ACO78124.1| ATP-dependent DEAD/DEAH box helicase [Azotobacter vinelandii DJ]
          Length = 439

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL+E  +V  T VQ A + P L   D+ V A+TGSGKT AF L L + L+ + 
Sbjct: 7   LHERLLKALAELNFVEPTPVQAAAIPPALEGHDLRVIARTGSGKTAAFVLPLLNGLIGDA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P  +  AL + PTRELA Q  +E+E     T +   +  GG +   +   L+    
Sbjct: 67  R---PRVSIRALILLPTRELAQQTLKEVERFSQFTFIKSGLVTGGENFKVQAALLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL +H+    L++  ++ +VLDEAD MLD+GF +D++ +++S   +R+ L+FS
Sbjct: 124 ILIGTPGRLLEHLNAGHLDLRDVEVLVLDEADRMLDMGFAEDVQRLVESCANRRQTLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   +             R  + +   +   +           + ++  +  +L     
Sbjct: 184 ATTGGSGLREMVAKVLREPRHLMLNAVGELSETTRQQIVTADDPAHKERLVHWLLENETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TRA   R    L     +   L GE  Q++R  A++ +R G ARV +ATDVA
Sbjct: 244 RKAIVFTNTRAQADRLYGHLVAAGHKAFVLHGEKDQKDRKLAIERLRQGGARVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G++V +I  N       + R   
Sbjct: 304 ARGLDVDGLDLVINFDMPRSGDEYVHRVGRTGRAGAEGLAVSLICHNDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
                     ++
Sbjct: 364 QRFERRVIKGLK 375


>gi|318041670|ref|ZP_07973626.1| putative ATP-dependent RNA helicase [Synechococcus sp. CB0101]
          Length = 407

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 115/360 (31%), Positives = 187/360 (51%), Gaps = 2/360 (0%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           E+GY N + +Q   +   L  +DV+ +AQTG+GKT  F L +   L       +  +   
Sbjct: 3   EKGYTNPSPIQTQCIPAVLEGRDVMAAAQTGTGKTAGFTLPMLERLRH--GPHARNNVVR 60

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA QVG  +        +   V  GGV ++ +   L+ GA ++V TPGRL 
Sbjct: 61  ALVLTPTRELAAQVGENVAAYSRHLDLRSDVVFGGVKINPQMMRLRGGADVLVATPGRLM 120

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D  +   + ++ ++ +VLDEAD MLD+GF  DI+ IL   P KR+ L+FSAT   +I  L
Sbjct: 121 DLAQQNAVKLNRVEILVLDEADRMLDMGFIRDIQKILALLPAKRQNLLFSATFEASIKKL 180

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A     + V++    ENR  + +++      ++ + + + ++++ +  +  +VF  T+  
Sbjct: 181 ATGLLHNPVQLQATPENRTATTVEHLLHPCDMARKPDLLCHLIKSNDWQQVLVFSRTKHG 240

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
            +R    L +      A+ G  SQ  R+ AL   + G  RV +ATD+AARGID+  L  V
Sbjct: 241 ANRIADRLTQEGMAAAAIHGNKSQGARTRALAGFKSGELRVLVATDIAARGIDIHQLPHV 300

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ +L +  E+ +HR GRTGRAG  G +V ++          + R     +  +  P  E
Sbjct: 301 VNLDLPNQAEDYVHRIGRTGRAGCNGHAVSLVAAEEHELLRAIERLIGNPLPKQEVPGFE 360


>gi|295101481|emb|CBK99026.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           L2-6]
          Length = 395

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/355 (36%), Positives = 197/355 (55%), Gaps = 7/355 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            + I +A+   G+  +T VQE  +   L  +DV+  A TG+GKT AFG+ +A  +     
Sbjct: 9   SEAIHKAVERMGFAEMTEVQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPA-- 66

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQNGAH 126
                 AP A+ +APTRELA Q+  EL  L      V  VC+ G  ++ ++ + L  G  
Sbjct: 67  ----LKAPQAVILAPTRELAQQIAEELTGLTYFMPEVQVVCVYGGANMEKQAKRLAEGCQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   +++ H+  VVLDEADEML++GF  D++ I+     ++ + MFS
Sbjct: 123 IVVATPGRLMDHYKHHNIDLDHVTQVVLDEADEMLNMGFYKDVKHIIGLMKARKSLSMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQKDA  + +  +      I    +  +  ++ + +  I+   G K 
Sbjct: 183 ATISREVMDIGWMYQKDAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ ER+  +Q  RDG+  V +ATDVAAR
Sbjct: 243 VMVFCDTKFNTAALANQLARLGFSVDCLHGDLSQNERNRIMQNFRDGKLNVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++  + E+  HR GRTGRA ++G+S        ++R + L R
Sbjct: 303 GIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR 357


>gi|134057099|emb|CAK44387.1| unnamed protein product [Aspergillus niger]
          Length = 491

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 193/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG ++  + R 
Sbjct: 86  VID------TVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VRV +  +      I    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ GE+ Q+ER + +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 320 STDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRILRDI 379

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 380 ELYYSTQIDEMPM 392


>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
 gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
          Length = 407

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   D   ++  S  R+   I         ++    ++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|262370602|ref|ZP_06063927.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314402|gb|EEY95444.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 640

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 156/590 (26%), Positives = 241/590 (40%), Gaps = 31/590 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFADFPLHESLQQALQSLGFTAPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L A+       +R    + P  L + PTRELA QV ++               I G  
Sbjct: 63  NALAAQETFVPFKERMKAITQPNILVLCPTRELAQQVSQDAIGFVRHMKGARIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  +++ LMFSAT +  I TLA+    D  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRKQTLMFSATFAGRIITLAERMMNDPQRIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSAEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYRE 362

Query: 353 QRRAERLFR----EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           + +   L        NVS +    PS    R                  G  +       
Sbjct: 363 RGKIRALEDFLDARLNVSEIEGLEPSPPPARGSRDGGGRGRDGRGRDGGGRGRGGFGGRD 422

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-- 466
                        +    G   P           R  F  + R  +     R   +G   
Sbjct: 423 GGGRARFEGESNFKRREGGDDRPRRSYDDKPRGDRPSFGGEDRPRREFNNDRPRREGGFG 482

Query: 467 ---SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                       +   +     P   R  G   +   +   +P   F        D  RR
Sbjct: 483 DRPQRSFDDRPKRDFGDR----PAPRREGGFGDRPQRSFDDRPKREF------NSDRPRR 532

Query: 524 TVKLDKGIQLKYLG---GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGA 570
               +   +        G + D++  +   F  +  +D   +   R +G 
Sbjct: 533 EGGFNDKPRFDANDDNRGNRVDYKPRREGSFGDRPKRDFGDRPAPRREGG 582


>gi|163741384|ref|ZP_02148775.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385118|gb|EDQ09496.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           2.10]
          Length = 458

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   ++E GY + T +Q   +   L  +DVL  AQTG+GKT AFG+ L + ++   
Sbjct: 25  LPEQLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMMQYG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L +APTRELA Q+   L+ L   T +   + +GGVS++ +   L  G  
Sbjct: 85  RKPA-AKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGTD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 144 ILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y +  VR+ +    +    I      +A +++ + +  +L  H  + 
Sbjct: 204 ATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDER 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ +ATDVAAR
Sbjct: 264 TLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + + +  N++
Sbjct: 324 GLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNLN 383

Query: 367 V------VWEPAPSVEA 377
           +       WE  P  +A
Sbjct: 384 IPVASGRPWEVLPDAKA 400


>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 535

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 187/377 (49%), Gaps = 10/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N PQ I + + E+ Y+  T +Q       L+ KDV+  A+TGSGKT++F +    
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +         P  L +APTREL  Q+  E       T +    C GGV    + +D
Sbjct: 214 HIL-DTPLAQYREGPRVLILAPTRELVCQIADEAIKFTKGTAIKTVRCFGGVPQSSQMKD 272

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            Q+G  I V TPGRL D I+    ++S    ++LDEAD ML++GF   ++ I+      R
Sbjct: 273 FQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRMLEMGFEVQVQDIIGQIRPDR 332

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRD-NAIVNI 238
           + +M++AT   AI   A  +    +++NI   +   +  +     +    DRD      +
Sbjct: 333 QTVMWTATWPQAIQQFALGFMFHPLQINIGNPDLHANESVKQIIEVCQERDRDSKMNEIV 392

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            R    K  ++F  T+ S       L +  ++V  + G+  Q ER  AL   + G     
Sbjct: 393 KRIGSEKKVLIFVKTKRSADNLCYKLRDQRYRVACMHGDKVQAERDRALSDFKSGAVNYL 452

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQRRA 356
           IATDVA+RG+D+ ++E+VI+ E+ S+ EN +HR GRTGR GR  +G ++ +      R A
Sbjct: 453 IATDVASRGLDIRNIEIVINYEMPSDIENYIHRIGRTGRMGRSVEGEAISLFTYADARLA 512

Query: 357 ERL---FREANVSVVWE 370
           + L    + A+  V  E
Sbjct: 513 KDLISVLKGAHQEVPSE 529


>gi|297817166|ref|XP_002876466.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322304|gb|EFH52725.1| hypothetical protein ARALYDRAFT_486301 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 198/387 (51%), Gaps = 18/387 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +I     +   +    YV  T VQ   +   L ++D++  AQTGSGKT AF   +
Sbjct: 148 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLGQRDLMACAQTGSGKTAAFCFPI 207

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 208 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 267

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I++
Sbjct: 268 NQQLRELERGVDILVATPGRLNDLLERARVSMQRIKFLALDEADRMLDMGFEPQIRKIVE 327

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 328 QMDMPPRGERQTMLFSATFPREIQRLAADFMSNYIFLAVGRVGSSTDLITQRIEFVQESD 387

Query: 231 RDNAIVNILRYHGAKN-----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           + + ++++L             +VF  T+         L  + F   ++ G+ +QQER  
Sbjct: 388 KRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREV 447

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++ 
Sbjct: 448 ALRSFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIAT 507

Query: 346 FVIPQN---MQRRAERLFREANVSVVW 369
               +N   M R    L +EAN  V  
Sbjct: 508 AFFNENNAQMARLLAELMQEANQEVPE 534


>gi|227358108|ref|ZP_03842449.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|227161444|gb|EEI46481.1| ATP-independent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 457

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 138/378 (36%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P      L+E GY+ +T VQEA L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFADLHALPAEQLTNLNELGYLTMTPVQEASLPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A+           +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQRIDAKQFN------TQSLVLCPTRELADQVANELRRLARFLPNIKILTLCGGVPFSI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   + AHI+V TPGRL DH+  + + ++ +K +VLDEAD MLD+GF DDI  I+   
Sbjct: 115 QRDSLIHAAHIIVATPGRLLDHLNKQTVTLADVKTLVLDEADRMLDMGFFDDISDIISQM 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ L+FSAT    I  +++  Q+D V + I S +   +       +         + 
Sbjct: 175 SAQRQTLLFSATWPDEIAKISRKIQQDPVTIEINSPDELPAVEQQFYEISRYGK-LGLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L +H   + +VFC+T+       + L E    V+AL G++ Q+ER   L    +G  R
Sbjct: 234 KLLSHHQPNSCVVFCNTKRDCQDVYEALTESNQSVLALHGDMEQKERDQTLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++         RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    N+ + W+ APS
Sbjct: 354 NALEEMLNIKLDWQSAPS 371



 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV      HDPE       R  RAG        CAPEEI   + +      + D ++  
Sbjct: 311 EMVINYELSHDPEVHIHRIGRTARAGESGLAISFCAPEEIPRANALEEMLNIKLDWQSAP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G + + IG I + P   +V V 
Sbjct: 371 SGLSITPLVATMATLCIDGGKKAKMRPGDILGALTGDLGFSGEDIGKINIHPTHAYVAVK 430

Query: 515 ADGVDLLRRTVKLDK 529
                 + ++++  K
Sbjct: 431 QSIAKQVWKSLQQGK 445


>gi|85716308|ref|ZP_01047281.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
 gi|85696824|gb|EAQ34709.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
          Length = 482

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 193/374 (51%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY + T +Q+  +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKLTRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 125 VLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT+   I  +   +  +  R+ ++      + +    V  +    +   +       AK 
Sbjct: 185 ATMPNEIRRVTDAFLHNPQRIEVSRPATTAATVTQSQVSCSREPHEKRELLRHLLREAKE 244

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ +L   R G   + +A+DV
Sbjct: 245 LKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V++ ++  +P++ +HR GRTGRAGR G ++ ++     +    + +  
Sbjct: 305 AARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCPADFKSLAAIEKLT 364

Query: 364 NVSVVWEPAPSVEA 377
              +        +A
Sbjct: 365 GQPIPKAELSGYDA 378


>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus]
          Length = 677

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 193/372 (51%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N P+++ E + ++G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 262 FQNYPEILRE-IQKQGFTKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHID 320

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L +APTRELA+Q+ +E+   Y+  G+      GG +   +   +  
Sbjct: 321 GQITPRDERPGPNVLVMAPTRELALQIEKEV-GKYSYRGIKAVCVYGGGNRKEQINIVTK 379

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D ++   LN+S +  ++LDEAD MLD+GF   I   L      R+ +
Sbjct: 380 GVQIVIATPGRLNDLVQAGVLNVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPDRQTV 439

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y K+ ++V + S +      +  +  ++   ++ + +    R  
Sbjct: 440 MTSATWPQGVRRLAQSYMKNPIQVCVGSLDLAAVHTVTQKICMINEDEKLDMMHQFFREM 499

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G+ +  IVF   +A V   +  LA       ++ G+  Q +R  AL+ ++ G  ++ +AT
Sbjct: 500 GSYDKVIVFFGKKAKVDDISSDLALSKIDCQSIHGDREQADREQALEDLKTGAVQILLAT 559

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           DVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A+    
Sbjct: 560 DVASRGIDIEDITHVLNYDFPKDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKELIN 619

Query: 359 LFREANVSVVWE 370
           +  EAN  V  E
Sbjct: 620 ILEEANQEVPEE 631


>gi|297847510|ref|XP_002891636.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337478|gb|EFH67895.1| hypothetical protein ARALYDRAFT_474250 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 392

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++     +   + + GY   + +Q+  L P L+ +DV+  AQ+G+GKT    +++
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   + +        AL ++P+RELA Q  + ++ + A T +    CIGG S+  + 
Sbjct: 81  CQIVNTSSRKV------QALVLSPSRELASQTEKTIQVIGAHTNIQAHACIGGKSIGEDI 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G H V GTPGR+ D I+   L    +K +VLDE+DEML  G +D I  +  + P 
Sbjct: 135 KKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPH 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++ + SAT+   I  + + +  D VR+ +  +      I      +     + + + +
Sbjct: 195 DIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCD 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI+FC+TR  V   T+ +    F V ++ G+  Q+ER   +   R  ++RV
Sbjct: 255 LYGRLIINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDEIMNQFRSFKSRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+DV ARGID+  +  VI+ ++ +NPE  +HR GR GR GR+G+++  +  +  +  +
Sbjct: 315 LIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLK 374

Query: 358 RLFREANVSVVWEPA 372
            + R     +   PA
Sbjct: 375 DIERHYGTKIREMPA 389


>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
 gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
           T469]
          Length = 451

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 127/416 (30%), Positives = 219/416 (52%), Gaps = 17/416 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I +    AL E  +V  T VQE  +   ++ +D++V ++TGSGKT+AF + +   
Sbjct: 6   FEDMSISKGTKNALKEHNFVEPTEVQEKAIPLAIKGRDLIVQSKTGSGKTLAFLIPIFEN 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L          S   A+ + PTRELA QV R    +    G    V  GG  + R+   L
Sbjct: 66  LN---------SGLEAIVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             GA +V+GTPGR+ D +R   LN++ ++  VLDEAD MLD+GF DDI++IL  +PK ++
Sbjct: 117 -KGASMVIGTPGRVMDLMRRGYLNLNGIRFFVLDEADRMLDMGFIDDIKWILQKTPKDKQ 175

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M++FSAT+ P I +LA+ Y K+  ++ ++ +     ++    V V   ++   + ++L  
Sbjct: 176 MMLFSATMPPEIISLARRYMKNPEKIILSEDEITAENVAQYYVEVGEINKIAKLSSLLIS 235

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  ++FC+TR       ++L ++ F+  AL G++ Q  R+  +   + G+  + ++T
Sbjct: 236 ERGKY-LIFCNTRRKTKNIAEILQKYGFKAFALHGDMRQATRTRTMDAFKQGKIDILVST 294

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  V++ ++   P++ +HR GRTGR    G ++  + +  +    R+  
Sbjct: 295 DVAARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIED 354

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                +      +V  I+ER   + + D   +     + K      L++ D  KIA
Sbjct: 355 FIGKRIPKMEIKNVGKIKERIDYKEISDIFGMVKFNFELKNE----LSEWDLIKIA 406


>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
 gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
          Length = 407

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ + GY   T+VQ   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   +   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQVADQARAMAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   +  +++  S  R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNEPAKIDAKSPLRERKKIAQWYHRADDAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V
Sbjct: 240 HIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGAVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   E
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMLE 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|91216282|ref|ZP_01253249.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
 gi|91185420|gb|EAS71796.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
          Length = 423

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 8/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+S +GY   T +QE  +   L  KDVL SAQTG+GKT  F L L   L    
Sbjct: 8   LSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQLLSQTP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV + ++       +   V  GGV+   +   L+NG  
Sbjct: 68  PL--RNRPVRALILTPTRELAAQVHQSVKDYGKFVDLRSTVIFGGVNQKSQVSTLRNGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      L+++ ++ +VLDEAD MLD+GF  DI+ I+   PK+R+ L+FS
Sbjct: 126 VLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLDMGFLRDIKKIMKLIPKQRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA  + K+ V V    EN     I+ +   VA   + + ++ ++     + 
Sbjct: 186 ATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTDLLIKLISEGNWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  K L        A+ G  SQ  R+ AL   + G  +V +ATD+A+R
Sbjct: 246 VLVFSRTKHGANKLAKKLEAAKIGAAAIHGNKSQGARTKALAGFKSGSVKVLVATDIASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  V++ EL +  E+ +HR GRTGRAG  G++V ++  +     + + +     
Sbjct: 306 GLDIPLLPYVVNFELPNVSEDYVHRIGRTGRAGASGLAVSLVSADETVFLKDIEKLIGDK 365

Query: 367 VV------WEPAPSV 375
           +       +EP P+ 
Sbjct: 366 IPMDIIEGFEPDPNA 380


>gi|288926741|ref|ZP_06420652.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
 gi|288336471|gb|EFC74846.1| ATP-dependent RNA helicase DeaD [Prevotella buccae D17]
          Length = 579

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 215/474 (45%), Gaps = 24/474 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL +  + + T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   DLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P  A   + ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 65  -DGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+ TPGRL  HI    +++S +   VLDEAD MLD+GF +DI  I    P   +
Sbjct: 124 RLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPNTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPAKIEELAKTLLKNPVEI-KLAVSKPAEKIKQEAYVCYETQKLGIIKDIFKA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+FC ++  V +    L         +  +L Q ER + +   + G+  V +AT
Sbjct: 243 GDLKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++     +++ +
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYHFQQIEK 362

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                V   P P+           + + P +    +  + +       + D ++      
Sbjct: 363 FLEKEVEKIPLPAD----------LGEAPEYARQSRPSKGRTTAKSRRRKDRDQ------ 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + HR                 R+  R  + A +  G      +  S   L+ G 
Sbjct: 407 QAHRHKPNNQRRPARPEQDKEREAARPANAAEQSAGDKPRRNRRQSEARLAEGK 460


>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
 gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
          Length = 486

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 203/392 (51%), Gaps = 14/392 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + EA    GY + T +QE  +   L  +DV+  A+TGSGKT AF L + 
Sbjct: 61  KSFADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVL 120

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +       S   A+ +APTRELA Q+ +  E L +   +  AV +GG+ + ++  
Sbjct: 121 QALLEKP------SGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAI 174

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH  + KG ++  LK +VLDEAD +LD+ F   I+ IL   P+
Sbjct: 175 ALGKKPHVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPR 234

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +R   +FSAT+S  + +L +   KD  RV++ S   Q         + +  + +D   V+
Sbjct: 235 ERHTYLFSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVH 294

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 295 LINSFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDI 354

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P++++VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q       
Sbjct: 355 LVATDVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWL 414

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQR 385
           R+       +   P    E +    R  +AQR
Sbjct: 415 RIEASMGKKLDEFPTEKEEVMVFQARVEEAQR 446


>gi|83647394|ref|YP_435829.1| ATP-dependent RNA helicase DbpA [Hahella chejuensis KCTC 2396]
 gi|83635437|gb|ABC31404.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 212/401 (52%), Gaps = 11/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + LS  GY ++T +Q   L   L  KDV+   +TGSGKT AFGL L + L  +
Sbjct: 41  SLHPGLLQNLSTLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNKLDIK 100

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +E+  L      + V    GG+    +   L++G
Sbjct: 101 R------FCVQALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHG 154

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ +H+R   L +  L  +VLDEAD ML++GF+  ++ I++  P +R+ L+
Sbjct: 155 AHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALDAIVEKMPAQRQTLL 214

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++A+    + V V + S +   S   Y   +   + R   +  +L  +  
Sbjct: 215 FSATYPNQIQSIAERVMLNPVMVKVESSHDNASIQQYYYKVEGDTHRLEVLRLLLLQYKP 274

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+        +L  H F  VAL G+L Q++R   L    +  A + +ATDVA
Sbjct: 275 ESTVVFCNTKRETQEVADMLVSHGFSAVALHGDLEQRDRDQTLVCFANKSASILVATDVA 334

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+  ++ +PE  +HR GRTGRAG  G++  +  ++   +  RL     
Sbjct: 335 ARGLDIDALDAVINFHIARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLEEYQE 394

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + V  EPAP+   ++        + P+    I G +K+ V 
Sbjct: 395 IIVSAEPAPATSLLKNL----AYKPPMETLQIDGGKKQKVR 431



 Score = 60.8 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G KQK     ++  L   +G++ + +G I +  +  +V V+   V L   
Sbjct: 415 PPMETLQIDGGKKQKVRPGDILGALTGDNGVDGKLVGKIHIFDNCAYVAVARSAVKLAMD 474

Query: 524 TVKLDKGI 531
             KL KG 
Sbjct: 475 --KLGKGK 480


>gi|294936207|ref|XP_002781657.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
 gi|239892579|gb|EER13452.1| eukaryotic translation initiation factor, putative [Perkinsus
           marinus ATCC 50983]
          Length = 395

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 192/373 (51%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   + + G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L    T+    
Sbjct: 29  LKEDLLRGIYQYGFERPSAVQQRAILPIVKGRDVVVQSQSGTGKTCVFALGALQTVKPTE 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L ++PTRELA Q  +    L     V V  C+GG  +  + R L+ G H
Sbjct: 89  ------RDPQVLILSPTRELAEQSQKVCLALGDYMNVQVHCCVGGKKLTDDIRALEAGVH 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+   I  + L+  HLK +VLDEADEMLD GF++ +  I    P   + ++ S
Sbjct: 143 IVSGTPGRVYHMISQRHLSTRHLKMLVLDEADEMLDRGFKEQVYDIYRYLPPSTQCVLVS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +  N+  +  RV +  +      I    V +     + + + ++       
Sbjct: 203 ATMPNEILEMTNNFMNNPFRVLVKRDELTLEGIKQFFVAVEKEQWKFDTLCDLYDTLTIT 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T  + E  F VV++ G++ Q+ER   +Q  R G+ARV I TD+  
Sbjct: 263 QAVIFCNTKQKVDWLTNKMREAKFTVVSMHGDMPQKERDAIMQKFRSGQARVLITTDIWG 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  + ++  R    + +  + 
Sbjct: 323 RGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKEDDVRILRDIEQYYST 382

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 383 QIDEMPMNVADLI 395


>gi|238878859|gb|EEQ42497.1| hypothetical protein CAWG_00709 [Candida albicans WO-1]
          Length = 550

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 173/373 (46%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 30  KSFEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCL 89

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        AL + PTRELA+Q  + +  L    G    V  GG S+  +  
Sbjct: 90  QLVKPKLNKV------QALILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIV 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  HI+VGTPGR+ D    K +++      V+DEAD+ML   F+  IE IL+  P  
Sbjct: 144 RLHDPVHILVGTPGRVLDLAARKVVDLLECPLFVMDEADKMLSREFKGIIEQILEFFPPN 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 204 RQALLFSATFPLAVKSFMDKHLTKPYEINLMDELTLKGI-SQFYAFVEEKQKLHCLNTLF 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +       ++ QQ R+      R G+ R  +
Sbjct: 263 SKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++
Sbjct: 323 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYSLYKI 382

Query: 360 FREANVSVVWEPA 372
            +E    +   PA
Sbjct: 383 EQELGTEIKPIPA 395


>gi|159475485|ref|XP_001695849.1| hypothetical protein CHLREDRAFT_118630 [Chlamydomonas reinhardtii]
 gi|158275409|gb|EDP01186.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 710

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 180/371 (48%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L +RG+     +Q   L   +  +D +  A+TGSGKT AF L +   +  + 
Sbjct: 61  LSSRILEVLKKRGFDRPLPIQAQALPIIMSGRDCIGIAKTGSGKTGAFVLPMMRHIKDQR 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL IAPTREL  Q+ +E +      G+      GG  V  +  +L+ G  
Sbjct: 121 P-LEQGDGPVALVIAPTRELVAQIAKEAKAFAKPLGLNALAVFGGSGVANQITELKRGVE 179

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV  TPGR+ D      GK  N+  +  +V+DEAD M D+GF   I  I+ +    R+ +
Sbjct: 180 IVACTPGRMIDLLVTSNGKITNLRRVTYLVMDEADRMFDMGFEPQISRIIQNIRPDRQTV 239

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT   A+  LA+   +D V + +   +  +  I     L    +R + ++ IL    
Sbjct: 240 MFSATFPRAVEALARKVLQDPVEIQVGGRSVVNDSITQWVELRPEKERFHRLLEILGEWY 299

Query: 244 AKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   ++F   + S     + L  + +  ++L G   Q +R + +   +     + +AT 
Sbjct: 300 ERGKLLIFVDKQESCDNLFRDLLRYGYPCLSLHGGKDQSDRESTIADFKGAVCNILVATS 359

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHR--SGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +AARG+D+ DL LV++ ++ ++ E+ +HR   GRTGRAG KG ++  I +  +R A  L 
Sbjct: 360 IAARGLDVKDLVLVVNYDVPNHHEDYVHRCVVGRTGRAGAKGTAITFISEEEERYAPDLV 419

Query: 361 REANVSVVWEP 371
           +    S    P
Sbjct: 420 KALRESGAPVP 430


>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
 gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 439

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 186/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   +  +DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFADRLLNDPVRVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L G+++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGKMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----ANVSVVWEPAP--------SVEAIRERDAQRI 386
            R       V ++    P         V+++ ++   RI
Sbjct: 364 KRYTEEILKVRILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|304413657|ref|ZP_07395101.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283748|gb|EFL92142.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 449

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 176/361 (48%), Gaps = 4/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL+++GY   T++Q   +   +  +D+L SA TG+GKT AF L +   LL  
Sbjct: 10  DLNDRLIKALNDKGYQRPTAIQAMAIPAAMEGRDLLGSAPTGTGKTAAFLLPILQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R S    P  L + PTRELA+QV  +   L   T + +    GGV+            
Sbjct: 70  PRRKS--GPPRILILTPTRELAMQVAEQANELAVNTSLAITTITGGVAYMNHAEIFTENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIQEENFDCHAVETLILDEADRMLDMGFAKDIEAIAAKTCCRKQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +  +         S   +   I +      +  +   + ++L    
Sbjct: 188 SATLEGEAIREFAKRILKDPLELDADPSRRERKKIIQWYYRADDIEHKKALLCHLLTQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K +I+F  T   V      L E       L G++ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VKKSIIFVRTCERVHELVGWLREADIHAWYLEGKMIQAKRTEAVIRLNDGRINVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ +I  +     +++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGTAISLIENHDYLLLQKVGRYL 367

Query: 364 N 364
            
Sbjct: 368 K 368


>gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
          Length = 414

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 196/384 (51%), Gaps = 8/384 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + +  A+++ GY + TSVQ  ++   +  +D+L SA TG+GKT AF L +  
Sbjct: 2   TFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVCQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P  +   L + PTRELA+QV  +   L   T +V  V  GG++   +R  
Sbjct: 62  FLL-DYPRKQPG-STRILILTPTRELALQVYEQAVELTKHTDIVSGVITGGINYGTDRET 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL +HI+ +  +   ++ ++LDEAD MLD+GFR  +  I   +  ++
Sbjct: 120 LSQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRMLDMGFRTIVNQIASEARWRK 179

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT     ++  AK+  ++   +      ++ + I     L    +   A++  +
Sbjct: 180 QNMLFSATLEGGGVSQFAKDILQNPEVIEAFPSRKEKNKIHQWYHLADDLNHKKALLVHI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A   +VF  TR  +      LA     V  L GE+ Q +R  AL   + G   V +
Sbjct: 240 LKEQATTTVVFVKTRERLQMLKDYLASQDIMVCWLQGEMPQDKRMAALTRFKSGEVPVLL 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+P++  VI+ ++    +  +HR GRTGRAG KG ++ +I        E +
Sbjct: 300 ATDVAARGIDVPEVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLI---EAHDFEFI 356

Query: 360 FREANVSVVWEPAPSVEAIRERDA 383
            + A  +     A  +  +R ++ 
Sbjct: 357 TKAARYTEEPIKARVISELRPQNK 380


>gi|197692465|dbj|BAG70196.1| ATP-dependent RNA helicase DDX5 [Homo sapiens]
          Length = 614

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 399 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 458

Query: 360 -FREANVSVVWEPAPSVEA 377
             REA+ ++  +    VE 
Sbjct: 459 VLREASQAINPKLLQLVED 477


>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
 gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
          Length = 556

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 139/570 (24%), Positives = 232/570 (40%), Gaps = 44/570 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + LS+  +   T +Q   +   L+ +D++  AQTG+GKT AFGL +   LL + 
Sbjct: 25  LSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEMLLKDA 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         L +APTREL  Q+   L+    KT + + V +GG S+++++  L+ G  
Sbjct: 85  KRPD-NRTVRTLILAPTRELVNQIADNLKLFVRKTALRINVVVGGASINKQQLQLERGTD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I  + L++  +  +VLDEAD+MLDLGF  D+  I    P KR+ ++FS
Sbjct: 144 ILVATPGRLLDLISRRALSLGQVSYLVLDEADQMLDLGFIHDLRKISKMVPAKRQTMLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+   I  LA  Y  + V+V ++   +    ++     V+  + +   +   +  +   
Sbjct: 204 ATMPKTIADLAAEYLTNPVKVEVSPPGKAADKVEQYVHFVSGQNHKTEILKESISANPDG 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF  T+    +  K L    F   ++ G  SQ +R  AL+  RDG  RV +ATDVAA
Sbjct: 264 RAMVFLRTKHGAEKLMKHLEHVGFAAASIHGNKSQGQRERALKGFRDGEVRVLVATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  R    + R   +
Sbjct: 324 RGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEARLLRDIERLMGI 383

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            +      S EA  +R                G   +  +    +    +          
Sbjct: 384 EIA---VASGEAPADR----------------GRPARGNNRAGGRGGQGQGQGRGGAGQG 424

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG-SKQKAEARWL 484
                P          G           +     +     ++ F    G  + +   R  
Sbjct: 425 RAEGRPARPARRPHREGEAGEARAHNGERQERRPQRENNRNADFR---GQRRDERAPRPE 481

Query: 485 MPM-LCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDF 543
           +   L  +S                      A          +       ++  G     
Sbjct: 482 VDNDLASTSDFR------------------PAKKPQHNGAANEAGAHRGPRHAHGRPTGR 523

Query: 544 RGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
              +    + +  +DG  KR     G  + 
Sbjct: 524 HEDRGQNAQGEQRKDGGMKRRGPGNGGQRR 553


>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
 gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
          Length = 408

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I+ +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ ++FSAT     +     +   D   ++     R+   I          +   A++ 
Sbjct: 180 RKQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADSMEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  + A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 DIINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  V++ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|143462274|sp|Q0CIQ3|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
          Length = 445

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/421 (28%), Positives = 195/421 (46%), Gaps = 14/421 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     + EA  E GY   T +QE  +   L  +D++  A+TGSGKT AF L + 
Sbjct: 28  KTFRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPML 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +  +F       +L +APTRELA Q+   +E L A+  V   + IGG+ +  +  
Sbjct: 88  QALMDKPQQFH------SLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAI 141

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++V TPGRL DH+             ++ +  + L       I   L     K
Sbjct: 142 ALGKKPHVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLLRLLPK 201

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+S  + +L +    D VRV+++++N+  S +    + +    +D  +V +L
Sbjct: 202 RKTYLFSATMSSKVESLQRASLSDPVRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLL 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F  T     R + +L    F  + + G+LSQ  R  +L   R     + I
Sbjct: 262 NERAGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLI 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P ++ V++ +L  + +  +HR GRT RAG+ G++   + Q       R+
Sbjct: 322 ATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRI 381

Query: 360 FREANVSVVWEPAPSVE----AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                  V        E    A R  DAQR+    L +  +Q  + K       K   + 
Sbjct: 382 EDALGKKVEEYKPEKDEVMIFAERVNDAQRVAA--LTMRDMQDKDNKGRGPRNRKRTRDD 439

Query: 416 I 416
           +
Sbjct: 440 L 440


>gi|47217410|emb|CAG00770.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 456

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 193/423 (45%), Gaps = 30/423 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +   + G    T VQE  +   L+ +D +  A+TGSGKT AF L +
Sbjct: 1   MGDFSSLGLSDWLVKQCKQLGIHKPTPVQENCVPAILQGRDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLRDCIVVGGMDMVSQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK----GLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L N  H+VV TPGRL DHIR         I  L     D   E     F  D+E I+ 
Sbjct: 115 SELSNQPHVVVATPGRLADHIRSSSTFSMSKIQFLIMDEADRLLEQGCTDFTKDLETIMP 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              SE R   ++D R +L     +D  
Sbjct: 175 ALPAKRQTLLFSATLTDTLQELKNIAMNKPFFWESKSETRTVDELDQRYILTPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F +T  +    T +L +  F  ++L   + Q++R   L   
Sbjct: 235 LVHLIQTFTDQHDDWSIIIFTNTCKNCQILTMMLQQFNFPTISLHSMMKQKQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ Q
Sbjct: 295 KASVYKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKK 402
                   +  +    +   P      + E++  +IL        +  + L+S   DEKK
Sbjct: 355 YDIHLVHSIEEQIQTKLKEFP------VEEKEVLKILTQVNVTRRECEIRLESTDFDEKK 408

Query: 403 MVD 405
            ++
Sbjct: 409 EIN 411


>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
 gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
          Length = 572

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 211/490 (43%), Gaps = 32/490 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P SA   + ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P
Sbjct: 120 LKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +
Sbjct: 180 ASCQTIMFSATMPKKIEELAKTLLKNPVEI-KLAVSKPAEKIHQMAYVCYETQKMGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  I+F  ++  V +    L         +  +L Q++R++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +  +     +
Sbjct: 299 LVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDIYYFK 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---- 413
           ++    +  V   P P  E + E    +    P    + +   +K  D    K       
Sbjct: 359 QIESFLDKEVEKIPLP--EELGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGN 416

Query: 414 ----------------EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                           E  A G  R   +   A  +    +  +  +    + +  + G 
Sbjct: 417 RQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPAAAEEKGGNKKNNRQGK 476

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 477 GRSQERQPKA 486


>gi|299115354|emb|CBN74178.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 923

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 141/548 (25%), Positives = 233/548 (42%), Gaps = 41/548 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
           +++      AL  RG    T VQ    +  L  +D++  ++TG+GKT+AFGL +   L  
Sbjct: 261 KDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGR 320

Query: 63  ---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                +   +    +P  L + PTRELA QV  ELE L +  G+   V  GG +   + R
Sbjct: 321 FAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMR 380

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--FILDSSP 177
            L +G  I+V TPGR+ DH++   L++S ++  VLDEADEML++GF DDIE  F      
Sbjct: 381 SLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVK 440

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + + +L  +   S       K          +     + +       +   S   ++++ 
Sbjct: 441 ECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLE 500

Query: 238 ILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  +  K  +AIVF +++A                  L G++SQ +R   ++  R    
Sbjct: 501 DIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGF 560

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVAARGID+ D++LV+      +P++ +HRSGRTGRAGR G++V +  +N  R 
Sbjct: 561 QVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRD 620

Query: 356 AERLFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             ++ +       +E    PS E +        L   +  + I+G    MVD        
Sbjct: 621 IRKIEQGVGQGFRFERGAVPSAEQVMS------LAGTVAREQIKGVSDDMVDFFRE--SA 672

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG---GGSRDNFKGSSWFS 470
           +++ A      +  L A              R        KV       R    G   F+
Sbjct: 673 QELLAEEESEDKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFA 732

Query: 471 LS-VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF--VEVSADGVDLLRRTVKL 527
           +  +G     E                  +G I +  D T    ++S +  D L +  K 
Sbjct: 733 VGKLGRAAGFEP----------------MVGRIAIAKDPTTAVFDMSTEAADQLVKFSKE 776

Query: 528 DKGIQLKY 535
                +++
Sbjct: 777 QNLESIEF 784


>gi|261333672|emb|CBH16667.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 616

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 188/387 (48%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           N+  V+ E +   GY   T VQ   +   L  +D++  AQTGSGKT ++ +   + +L  
Sbjct: 121 NMVPVLLENVKRCGYTKPTPVQSLGIPTALNHRDLMACAQTGSGKTASYLIPAINEILLN 180

Query: 64  -AENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    +SP S  +P AL +APTREL++Q+  E       T V   V  GG     +  +
Sbjct: 181 ISNRPPYSPGSHSSPQALILAPTRELSLQIYGEARKFTYHTPVRCVVVYGGADPRHQVHE 240

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++V TPGRL D      +  S ++ ++LDEAD MLD+GF   I  I+       
Sbjct: 241 LSRGCKLLVATPGRLMDMFSRGYVRFSEIRFLILDEADRMLDMGFEPQIRMIVQGPDSDM 300

Query: 181 RMLM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                     +SAT    I  LA+ +      + +        +I      +   D+  A
Sbjct: 301 PRAGQRQTLLYSATFPVEIQRLAREFMCRHSFLQVGRVGSTTENITQDVRWIEDPDKRQA 360

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +LR +  K  +VF   +       + L       V++ G+  Q+ER  AL++ + G 
Sbjct: 361 LLTLLRENEGKLVLVFVEKKRDADYLERFLRNSELACVSIHGDRVQREREEALRLFKSGA 420

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +V +ATDVA+RG+D+P++ +VI  ++ SN ++ +HR GRTGRAG+ G+++    +  + 
Sbjct: 421 CQVLVATDVASRGLDIPNVGVVIQYDMPSNIDDYVHRIGRTGRAGKVGVAISFFNEKNRN 480

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER 381
             + L    N       +P V A+ +R
Sbjct: 481 IVDDLIPLLN-ETNQVISPEVRALAKR 506


>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 418

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 196/389 (50%), Gaps = 2/389 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I + ++E GY   T +Q A +   L +KD++  AQTG+GKT AF L L   +L   
Sbjct: 8   LHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLLHQILQAK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +       L + PTRELA QV        AK  +   V  GG S++ +   L+ G  
Sbjct: 68  DSNT-TKGIQVLVLTPTRELAQQVHASFLKYSAKLPIQSVVAYGGASINMQLDALRQGCD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL + I    +++S L+ +VLDEAD MLD+GF  DI+ IL   PK R+ L FS
Sbjct: 127 VLVATPGRLLELIMKNLIDLSKLQTLVLDEADRMLDMGFIIDIQRILKKLPKSRQTLFFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I  L+K   KD   + + S N   + ++     V    +   +  ++     + 
Sbjct: 187 ATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAVDQDRKSALLSFLIGSKNWQQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+       K + +      ++ G+ SQ  R   L   + G+ R  +ATDVAAR
Sbjct: 247 VLIFTRTKQGADELAKEMEKDGIATQSIHGDKSQGARDRVLADFKAGKVRALVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L+ V++ EL  N E+ +HR GRTGRAG  G+++ ++ +  +     + +     
Sbjct: 307 GIDIEQLQYVVNHELPYNAEDYIHRIGRTGRAGSTGLAISLVSEKERYLLTDIEKLVGEQ 366

Query: 367 VVWEPAPSVE-AIRERDAQRILQDPLFLD 394
            V +  P  E  + + +  +  ++P   +
Sbjct: 367 FVPQWLPGFEPDLNKVNNAQKKREPSKKE 395


>gi|114794629|pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|114794633|pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
           Trapped Dead-Box Helicase Bound To Rna
 gi|217035449|pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
 gi|217035453|pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
          Length = 413

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 200/381 (52%), Gaps = 9/381 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAIRE 380
            +  +  +   P    + I E
Sbjct: 393 EQYYSTQIDEMPMNVADLILE 413


>gi|13384106|gb|AAK21271.1| RNA helicase-like protein [Homo sapiens]
          Length = 561

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/435 (26%), Positives = 207/435 (47%), Gaps = 12/435 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +  +   A     
Sbjct: 1   MGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQ---APVTRV 57

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTREL +QV      L     +   + +GG+ V  +   L+    I++ TPGRL D
Sbjct: 58  LVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLID 117

Query: 138 HIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           H+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++FSAT++  +  L
Sbjct: 118 HLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDL 177

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHGAKNAIVFCST 253
           A    K+ VR+ + S       +    + +  +    R+  +  +L      + ++F  T
Sbjct: 178 ASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQT 237

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R    L     QV  L G LSQ +R  AL+  +D +  + +ATDVAARG+D+  +
Sbjct: 238 KKQAHRMHIFLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGV 297

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           + VI+  + +  ++ +HR GRT RAGR G SV ++ ++ ++  + + + A   V     P
Sbjct: 298 KTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILP 357

Query: 374 SVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
               ++ RD  +++ +D   +  ++ +EK+M       +     A   L   +  +    
Sbjct: 358 QDVILKFRDKIEKMEKDVYAVLQLEAEEKEMQQSEAQINT----AKRLLEKGKEAVVQEP 413

Query: 433 EITPVSLVSGRDRFR 447
           E +       R + +
Sbjct: 414 ERSWFQTKEERKKEK 428


>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 523

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 213/458 (46%), Gaps = 2/458 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ 
Sbjct: 66  GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LAK    + V ++++  N     ++     V    +   +  +++ +  + 
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +          + +    R+   P+     +   +        ++      AG  + H A
Sbjct: 366 LERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKNKRHVA 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           G  +  +  P S     D     +   K    +  N+K
Sbjct: 426 GNGSAPKRKPNSGNKASDSNSAAAGDDKSLRNNGSNYK 463


>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 477

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   G+  LT VQE  + P  R +D+LV+AQTG+GKT AFG  L   LL E 
Sbjct: 36  LAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQQLL-EK 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +      AL +APTREL  QV   L+     T + +A   GGV    +   LQ G  
Sbjct: 95  PRATQPGHTRALVLAPTRELVEQVADNLQQYAHFTSLTIAAVYGGVKHSSQANKLQAGLD 154

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL +H+    +N+  ++ +VLDEAD MLD+GF  +I  +L+   KK ++L FS
Sbjct: 155 VLVATPGRLLEHVELGNINLQQVEFLVLDEADRMLDMGFVGEISKLLNGMGKKPQILFFS 214

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++ ++TTLAK      + V ++  N     +++    V  + +    + +LR H    
Sbjct: 215 ATLTQSVTTLAKEILARPLSVAVSKRNAVADTVEHLLYPVDQARKYELFMELLRTHNWFQ 274

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF STR    +    L E   +   +  E +Q  R  AL+  ++G+ +V +AT+VAAR
Sbjct: 275 VMVFSSTREEADKLINALKEDNVEGAVIHSEKTQGARRRALKEFKEGKLQVLVATEVAAR 334

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L+ V++ +L    E+ +HR GRTGRAG KG+++ ++  + + +   + +     
Sbjct: 335 GLDIQGLDYVVNLDLPFFIEDYVHRVGRTGRAGSKGIAISLVSASDEPKVALIEKAIGTK 394

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 395 IKRVKIKGFE 404


>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
 gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
          Length = 523

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 213/458 (46%), Gaps = 2/458 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV ++ + + L+ G+ 
Sbjct: 66  GPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKLRKGSD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LAK    + V ++++  N     ++     V    +   +  +++ +  + 
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKAPMLAKLIKDNDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANKLARFLEEQDITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ +L +  E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +          + +    R+   P+     +   +        ++      AG  + H A
Sbjct: 366 LERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKNKRHVA 425

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           G  +  +  P S     D     +   K    +  N+K
Sbjct: 426 GNGSAPKRKPNSGNKASDSNSAAAGDDKSLRNNGSNYK 463


>gi|67624743|ref|XP_668654.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium hominis
           TU502]
 gi|54659828|gb|EAL38390.1| DEAD box polypeptide, Y chromosome-related [Cryptosporidium
           hominis]
          Length = 702

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 192/377 (50%), Gaps = 17/377 (4%)

Query: 1   MKIF---ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+ F   E I +++ + +    Y   T VQ+  +   L  +D++  AQTGSGKT AF   
Sbjct: 199 MQSFMELEGIHEILLDNIRRVKYERPTPVQKFSIPTVLNGRDLMACAQTGSGKTAAFLFP 258

Query: 58  LASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
           +   +L +    +P  +         P+AL ++PTRELA+Q   E       TG+   V 
Sbjct: 259 IVMKMLNDGPPPTPQQSSLRIKRMAYPVALVLSPTRELAIQTYEESRKFCFGTGIRTNVL 318

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  V  +  DL  G+ I+V TPGRL D I    +N+  +K ++LDEAD MLD+GF   
Sbjct: 319 YGGSEVRSQIMDLDRGSDIIVATPGRLRDLIDRGKVNLKLIKFLILDEADRMLDMGFAPQ 378

Query: 169 IEFILDSSPKKR-----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           I  I++ S         + +MFSAT    I  LAK++  + + + +         I  R 
Sbjct: 379 IREIVEDSEMPHSLDGRQTVMFSATFPREIQQLAKDFLHNYIFLTVGRVGATSGSIVQRV 438

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           V      +   +V +L   G    +VF   +    +    L +  F  V++ G+ SQQER
Sbjct: 439 VYAEEDHKPRLLVKLLLEQGEGLTVVFVEMKRRADQIEDFLIDQNFPAVSIHGDRSQQER 498

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
            +AL++ R G+  + +ATDVAARG+D+P++  VI+ ++  N ++ +HR GRTGRAG  G+
Sbjct: 499 EHALRLFRSGQRPILVATDVAARGLDIPNITHVINLDMPCNIDDYVHRIGRTGRAGNTGL 558

Query: 344 SVFVIPQNMQRRAERLF 360
           +   + ++ +     L 
Sbjct: 559 ATSFVNESNKPILRDLL 575


>gi|301154759|emb|CBW14222.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
          Length = 419

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 193/369 (52%), Gaps = 5/369 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL ++G+   T +Q   L   L+ KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F+  + P AL +APTRELAVQ+  + E L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQPNFA-TNQPRALILAPTRELAVQINHDAELLARTSGLRTALAYGGDGYDKQLKAI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      SP++
Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA         + I  E +    I       +  D+   ++ ++
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 369

Query: 360 FREANVSVV 368
                 S+ 
Sbjct: 370 EEYIGHSIP 378


>gi|293602448|ref|ZP_06684894.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819210|gb|EFF78245.1| ATP-dependent RNA helicase [Achromobacter piechaudii ATCC 43553]
          Length = 597

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 147/574 (25%), Positives = 238/574 (41%), Gaps = 54/574 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     +  A+ E G+   T+VQ A +   L   D++VS+QTGSGKT AF L    
Sbjct: 2   SFENLGLAPALLSAVQEAGFNTPTAVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +       +       L + PTRELA+QV         K      A  +GG+    + +
Sbjct: 62  RI--AQMPANKGVGVQVLVLTPTRELALQVTEATATYGRKLADLRTATVVGGMPYGAQLK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I+   P+ 
Sbjct: 120 ALSRRVDVLVATPGRLIDHLQSGRVKLNTVHTLVLDEADRMLDMGFIEDIETIVSRLPED 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           R+ L+FSAT+   I  LA    +D  R+ +A    +H++I    +     S +   + ++
Sbjct: 180 RQTLLFSATLDGTIAKLAAKMMRDPQRIEMAGAKEKHTNITQSLLYADDASHKMQLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF ST+         LA+  F   AL G+++Q++R+  L  ++ G+ R+ 
Sbjct: 240 LRDAKLDQAIVFTSTKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLSQLQRGQLRIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R
Sbjct: 300 VATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGLAFTLATHSERHKVRR 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +      S+  E    +E    +   R         S  G           K        
Sbjct: 360 IEHYIGQSITPEVIAGLE---PKRTPRP--------SAGGSGAPRGGKPFGK-------- 400

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                 R G             +  +R     R      G     +G        G++  
Sbjct: 401 ------RPGGFGGSRHEGGYQGNRENRSFGGPREGGAPRGEFKPREGGYQ-----GNRDG 449

Query: 479 AEARWLMPMLCRSSGINR-QSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
           A  R          G    +  G    +P  +F +  +          + + G Q     
Sbjct: 450 A-PR--------EGGYQGNRPFGD---RPARSFSDRPS-----FGDRPQREGGYQGNRPF 492

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           G++P   G    G +      G  +     +   
Sbjct: 493 GDRPPREGGFRGGDRDARPSFGGDRPSFGDRPQR 526


>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
 gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
          Length = 403

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   D   ++  S  R+   I         ++    ++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|254502530|ref|ZP_05114681.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222438601|gb|EEE45280.1| DEAD/DEAH box helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 430

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/355 (33%), Positives = 186/355 (52%), Gaps = 1/355 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ + GY   T +Q+  +   L  +D++  AQTG+GKT AFGL L   LLAE  R +P  
Sbjct: 16  AIKDNGYEAPTPIQQKAIPLILDGQDLMGLAQTGTGKTAAFGLPLIERLLAEPRRAAP-K 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTREL  Q+ + L      T + V   +GGVS++ + + +  G  I+V TPG
Sbjct: 75  GTRALILAPTRELVNQIAKNLISFLKTTPLRVTSVVGGVSINGQVKRMSKGTDILVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++     +VLDEAD+MLDLGF   +  I     K R+ L+FSAT+   I
Sbjct: 135 RLLDLVDRNAVDLGSASYLVLDEADQMLDLGFIHALRKIAGLVAKDRQTLLFSATMPKQI 194

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA++Y  D  RV ++   R    +  +   +    +   ++++L       ++VFC T
Sbjct: 195 NELAQSYLTDPARVEVSPVGRTADKVRQKVHFMDSKAKTGFLIDVLSDQPDDMSLVFCRT 254

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    R  + +A+      ++ G  SQ +R  A++ +R G  +V +ATDVAARGID+P +
Sbjct: 255 KHGAERLMRKMAQAGIAAGSIHGNKSQNQRERAIKELRSGAIKVLVATDVAARGIDIPGV 314

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
             V + EL    E  +HR GRT RAG  G +V +          ++ +   + + 
Sbjct: 315 SHVYNFELPEVAEAYVHRIGRTARAGADGDAVALCAPEEIGLFRQIEKLIGIDIE 369


>gi|308081024|ref|NP_001183303.1| hypothetical protein LOC100501699 [Zea mays]
 gi|238010618|gb|ACR36344.1| unknown [Zea mays]
          Length = 643

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 199/389 (51%), Gaps = 21/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    YV  T +Q   +   +  +D++  AQTGSGKT AF   +
Sbjct: 174 VNTFAEIDLGDALNENIRRCKYVKPTPLQRYAIPISIAGRDLMACAQTGSGKTAAFCFPI 233

Query: 59  ASTLL-----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            S +L      +  R +  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  
Sbjct: 234 ISGILKSPKPHQRSRSTRTACPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAP 293

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I+
Sbjct: 294 ITNQLRELERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIV 353

Query: 174 DSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +     +    + ++FSAT    I  +A ++  D + + +         I  R   V  S
Sbjct: 354 EGMDMPQRGERQTMLFSATFPKEIQRMAADFLADYIFLAVGRVGSSTDLIVQRVEFVLDS 413

Query: 230 DRDNAIVNILRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
           D+ + +++++    A          +VF  T+         L  + F   ++ G+ +QQE
Sbjct: 414 DKRSYLMDLIHAQKANGTHGKHALTLVFVETKRGADALEDWLFRNGFPATSIHGDRTQQE 473

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R +AL+  + G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G
Sbjct: 474 REHALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSG 533

Query: 343 MSVFVIPQN---MQRRAERLFREANVSVV 368
           ++     ++   + R    L +EAN  V 
Sbjct: 534 LATAFFNESNTTLARPLSDLMKEANQEVP 562


>gi|218184840|gb|EEC67267.1| hypothetical protein OsI_34232 [Oryza sativa Indica Group]
          Length = 524

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 152 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 211

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 212 IDPEK------NAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 265

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 266 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQ 325

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 326 LLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 385 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 444

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 445 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 504

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 505 ELGTEIKTIP-PQID 518


>gi|143360935|sp|Q109G2|RH12_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 12
 gi|10140782|gb|AAG13612.1|AC078840_3 putative RNA helicase [Oryza sativa Japonica Group]
 gi|110289357|gb|ABB47852.2| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
 gi|215706425|dbj|BAG93281.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222613101|gb|EEE51233.1| hypothetical protein OsJ_32082 [Oryza sativa Japonica Group]
          Length = 521

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 209 IDPEK------NAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 263 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 323 LLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 382 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 442 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 501

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 502 ELGTEIKTIP-PQID 515


>gi|195376889|ref|XP_002047225.1| GJ13322 [Drosophila virilis]
 gi|194154383|gb|EDW69567.1| GJ13322 [Drosophila virilis]
          Length = 797

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +++ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + 
Sbjct: 286 FDEQLLKSVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQR 345

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ G  
Sbjct: 346 E-LRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCE 404

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 405 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 464

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 465 ATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSE 524

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF + +A        L       + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 525 GAVLVFVTKKADAETVANNLIVKEHNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 584

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 585 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 641


>gi|260790063|ref|XP_002590063.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
 gi|229275251|gb|EEN46074.1| hypothetical protein BRAFLDRAFT_123431 [Branchiostoma floridae]
          Length = 403

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P ++ +DV+  AQ+G GKT  F +++  
Sbjct: 31  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIKPIVKGRDVIAQAQSGVGKTATFSISILQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL ++PTRELA Q+ + +  L     V    CIGG +V  + R 
Sbjct: 91  CLDIQ------MREVQALVLSPTRELATQIQKVILALGDYMSVQCHSCIGGTNVGEDIRK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 145 LDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 205 QVVLLSATLPHEILEMTTKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER   ++  R G +RV I
Sbjct: 265 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERDAIMKEFRSGASRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARGID+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 325 TTDVWARGIDVPQVSLIINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 384

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 385 EQYYSTQIDEMPMNVADLI 403


>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 480

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ +RG+   + +QE  +   L  KDVL +AQTG+GKT  FGL +   L+   
Sbjct: 8   LAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQRLM-SG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S A+   AL + PTRELA QV   +        +  AV  GGV ++ +   L+ G  
Sbjct: 67  PKVS-ANNVRALILTPTRELAAQVEESICAFSEFLPLKTAVVFGGVGINPQMIKLRKGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D  +   +  S L+ +VLDEAD MLD+GF  DI+ +L   P+ R+ L+FS
Sbjct: 126 VLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPEDRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  ITTLAK   ++ V ++ A  N     ++   V +  S +  A++ +++    + 
Sbjct: 186 ATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTIDKSKKTTALICLIKQQKWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L        A+ G  SQ  R+ AL   ++G  +V +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGDIKVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L +V++ +L +   + +HR GRTGRAG  G +   +     +  + +       
Sbjct: 306 GIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVSAEELQNLKDIETLIQKL 365

Query: 367 VVWEPAPSVE 376
           +  E     E
Sbjct: 366 LPRETLEGFE 375


>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 453

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 203/385 (52%), Gaps = 10/385 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EAL + GY   T +Q   L   L  +D++  A TGSGKT AF L +  
Sbjct: 18  TFKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           A  +APTRELA Q+ ++ E L +  G   AV +GG+ +  +   
Sbjct: 78  KLWEDP------KGLFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIA 131

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HIVV TPGRL  H    KG ++  +K +VLDEAD +LDL F   I+ IL   PK+
Sbjct: 132 LAKRPHIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + VR+ ++S+ +  S +    +L+ L D+D  ++ ++
Sbjct: 192 RTTYLFSATMTTKVAKLQRASLSNPVRIEVSSKYQTVSTLLQYYLLMPLKDKDAYLIYLI 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F  T     R + +L    F  V L G+LSQ +R  AL   + G  RV +
Sbjct: 252 NSLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLV 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q      +R+
Sbjct: 312 ATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRI 371

Query: 360 FREANVSVV-WEPAPSVEAIRERDA 383
            +     +  W   P   A+ +   
Sbjct: 372 EQVVGKKMELWPTDPEEIALLKERV 396


>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
 gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
           18C-A]
          Length = 572

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 211/490 (43%), Gaps = 32/490 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEDLDLNDNVLDALYDMRFDECTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P SA   + ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLDGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P
Sbjct: 120 LKSLSLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +
Sbjct: 180 ASCQTIMFSATMPKKIEELAKTLLKNPVEI-KLAVSKPAEKIHQMAYVCYETQKMGIIKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I +    K  I+F  ++  V +    L         +  +L Q++R++ +   + G+  V
Sbjct: 239 IFKAGDLKRVIIFSGSKQKVKQIAASLGRKHINCGEMHSDLDQEQRNDVMFKFKSGQIDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++  +  +     +
Sbjct: 299 LVATDIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDDIYYFK 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---- 413
           ++    +  V   P P  E + E    +    P    + +   +K  D    K       
Sbjct: 359 QIESFLDKEVEKIPLP--EELGEGPEYKGNGKPKRGGNAKTRRRKDRDQQSHKDKKQGGN 416

Query: 414 ----------------EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
                           E  A G  R   +   A  +    +  +  +    + +  + G 
Sbjct: 417 RQRNRRPAVQNQSTADENSAVGLERKTNSRENAAPQKKQENRPTAAEEKGGNKKNNRQGK 476

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 477 GRSQERQPKA 486


>gi|119493424|ref|XP_001263902.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142981160|sp|A1D8G1|DHH1_NEOFI RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119412062|gb|EAW22005.1| ATP dependent RNA helicase (Dhh1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 507

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|71000753|ref|XP_755058.1| DEAD-box RNA helicase Dhh1/Vad1 [Aspergillus fumigatus Af293]
 gi|74673820|sp|Q4WWD3|DHH1_ASPFU RecName: Full=ATP-dependent RNA helicase dhh1
 gi|66852695|gb|EAL93020.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus fumigatus
           Af293]
 gi|159128072|gb|EDP53187.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus fumigatus
           A1163]
          Length = 507

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|148910547|gb|ABR18348.1| unknown [Picea sitchensis]
 gi|224284155|gb|ACN39814.1| unknown [Picea sitchensis]
 gi|224286107|gb|ACN40764.1| unknown [Picea sitchensis]
          Length = 413

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L     V V  C+GG SV  ++R L +G H
Sbjct: 105 ----GLLDCQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVRDDQRILMSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R   L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRHSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNV 400

Query: 366 SVVWEP 371
            V   P
Sbjct: 401 VVEELP 406


>gi|118579192|ref|YP_900442.1| DEAD/DEAH box helicase domain-containing protein [Pelobacter
           propionicus DSM 2379]
 gi|118501902|gb|ABK98384.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
           2379]
          Length = 447

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 191/376 (50%), Gaps = 7/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + FE     I   +S  GY   T +Q+  + P +   DV+  AQTG+GKT AF L +  
Sbjct: 3   FQKFE-FHPTIAAGISAAGYSTPTPIQKQSIPPVMAGSDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+             AL IAPTRELA Q+   +  L AKTG+      GGVSV+ +   
Sbjct: 62  RLMEGKQG-----TVRALIIAPTRELAEQINTSIAQLGAKTGLKSMTVYGGVSVNPQIER 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  DI  +L   P +R
Sbjct: 117 LRRGVDIVVACPGRLLDHINQGTIDLSRIEVLVLDEADQMFDMGFLPDIRRVLKHLPAQR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA +  +  + V   S     +   +    V+   +   ++ +LR
Sbjct: 177 QTLLFSATMPDDIRRLASDILRQPITVQAGSTAPPVTV-SHALYPVSQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFARTKHRAKRLGEQLEKAGYRATSLQGNLSQNRRQAALDGFRDGTFQIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ ++    E  +HR GRTGRA R G +  ++  +       + 
Sbjct: 296 TDIAARGIDVSQISHVVNYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTPDDNAMVRTIE 355

Query: 361 REANVSVVWEPAPSVE 376
           ++ N  +        +
Sbjct: 356 KKLNAELERRTVDQFD 371


>gi|325119088|emb|CBZ54640.1| hypothetical protein NCLIV_050680 [Neospora caninum Liverpool]
          Length = 578

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/406 (27%), Positives = 182/406 (44%), Gaps = 39/406 (9%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  + P  I + +++ G+   T++Q       L  +D++  A+TGSGKT+AF L    
Sbjct: 128 TFEYTSFPSYILDVINQTGFQKPTAIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIV 187

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+    S    P+ L +APTREL  Q+  +     A + +  AV  GGV    +  +
Sbjct: 188 HINAQ-PYLSKGDGPIVLILAPTRELVEQIRTQCRTFAASSKIHHAVAYGGVPKRPQIME 246

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I V  PGRL D +  +  N+  +  +V+DEAD MLD+GF   I  I+      R
Sbjct: 247 LERGAEICVACPGRLIDFLESRVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR 306

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI--------ASENRQHSDIDYRAVLVALSDRD 232
           + LM+SAT    +  LA++  K+                  +Q   +         + + 
Sbjct: 307 QTLMWSATWPKEVQNLARDLCKEEPVHINVGSLDLQACQNIKQEVMVVQAPTSRQETRKV 366

Query: 233 NAIVNIL-------------------------RYHGAKNAIVFCSTRASVSRFTKVLAEH 267
              V                            R       ++F  T+      T+ +   
Sbjct: 367 PRRVEKCADEEEFGDSCGVEYEKRGQLMSLLRRIMDGSKILIFAETKRGADNLTRDMRVE 426

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            +  ++L G+  Q+ER+  L   ++GR  + +ATDVA+RG+D+ D+  VI+ ++ +  E+
Sbjct: 427 GWPALSLHGDKKQEERTWVLDEFKNGRNPIMVATDVASRGLDVKDIRHVINYDMPNQIED 486

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVWE 370
            +HR GRTGRAG KG +      +  R A  L    R AN  V  E
Sbjct: 487 YIHRIGRTGRAGAKGCAYTFFTPDKSRLARELVRVLRGANQPVPPE 532


>gi|320583039|gb|EFW97255.1| Cytoplasmic DExD/H-box helicase [Pichia angusta DL-1]
          Length = 451

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 174/414 (42%), Gaps = 14/414 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  ++ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +   
Sbjct: 29  NTFESFHLKRELLMGIFEAGFEKPSPIQEEAIPVALMGRDILARAKNGTGKTAAFVIPTL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  + ++        AL + PTRELA+Q  + ++ L A  G+ V V  GG S+  +  
Sbjct: 89  EKLKPKVNKI------QALILVPTRELALQTSQVVKTLGAHLGIQVMVTTGGTSLRDDIM 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++VGTPGR+ D    K       +  V+DEAD+ML   F++ IE IL   P+ 
Sbjct: 143 RLHEPVHVLVGTPGRVLDLASRKLAEFDECRMFVMDEADKMLSREFKNIIEQILKFFPQS 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD------IDYRAVLVALSDRDN 233
                          T     +    +           D      I      V    + +
Sbjct: 203 SSGKGNGYQSLLFSATFPLAVKSFMDQHLYKPYEINLMDELTLKGITQYYAFVEEKQKLH 262

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +        +I+FC++   V   +K + E  +       ++ Q  R+      R G
Sbjct: 263 CLNTLFSKLQINQSIIFCNSTNRVELLSKKITELDYSCYYSHAKMPQAARNKVFHEFRQG 322

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + R  + +D+  RGID+  + +V++ +     E  LHR GR+GR G  G+++ +I  N +
Sbjct: 323 KVRNLVCSDLLTRGIDIQAVNVVVNFDFPKTAETYLHRIGRSGRFGHFGIAINLINWNDR 382

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
               ++ +E    +   PA   +++        +  P  LD +    ++  +  
Sbjct: 383 FNLYKIEQELGTEIKPIPAEIDKSLYVVGQPESIPRPFKLDQLPNGNERNHNRY 436


>gi|327541188|gb|EGF27732.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 556

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 189/377 (50%), Gaps = 12/377 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + + L + GY   T +Q   +   L   DVL +AQTG+GKT AF L +   
Sbjct: 75  FEDLGLTGPLLQGLEQAGYETPTPIQAQSIPEILDGNDVLGAAQTGTGKTAAFALPILQI 134

Query: 62  LL-AENDRFSPASAPLA---------LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +   + +R  P+              L ++PTREL+ Q+         KT +   V  GG
Sbjct: 135 MWEDDQERREPSKRRGGRPGRRPIRTLVLSPTRELSAQIEANFRIYGKKTRLRSTVIFGG 194

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           V+ + + R+LQ+G   +V TPGRL D +    +++  ++ +VLDEAD MLD+GF  D++ 
Sbjct: 195 VNQNPQVRELQSGVDTLVATPGRLLDLVNQGFIDLKDVEILVLDEADHMLDMGFLPDVKR 254

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL   P+ R+ L+FSAT+   I  LA     D V + IA +      I+     VA +D+
Sbjct: 255 ILKFLPRDRQNLLFSATMPGPIRKLADEILVDPVTIQIAPQKPTVERIEQSICFVAQADK 314

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + + +      + +VF  T+       + L +   +  A+ G  +Q  R   L   +
Sbjct: 315 PRLLNHFIETKATGSTLVFTRTKHGADAVARRLVKAGVKAAAIHGNKTQANRVRTLNKFK 374

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +    V +ATDVAARGID+  ++ VI+ +  + PE  +HR GRTGRAGR+G +V     +
Sbjct: 375 NDELDVLVATDVAARGIDIDGIQTVINYDTPNTPEAYVHRIGRTGRAGREGETVMFCGGH 434

Query: 352 MQRRAERLFREANVSVV 368
             +    + RE  + + 
Sbjct: 435 ETKFFIAIEREIKLQIP 451


>gi|257437800|ref|ZP_05613555.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
 gi|257199723|gb|EEU98007.1| ATP-dependent RNA helicase DeaD [Faecalibacterium prausnitzii
           A2-165]
          Length = 395

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 128/355 (36%), Positives = 198/355 (55%), Gaps = 7/355 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            + I +A+   G+  +T +QE  +   L  +DV+  A TG+GKT AFG+ +A  +  E  
Sbjct: 9   SEAIHKAVERMGFAEMTEIQEKTIPVMLAGRDVIAKAPTGTGKTCAFGIPVAEHIDPEK- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  P A+ +APTRELA Q+  EL E  Y    V VA   GG ++ ++ R L  G  
Sbjct: 68  -----KYPQAVIMAPTRELAQQIAEELTELTYFMPEVQVACVYGGANMEKQARRLAEGCQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   ++++H+  VVLDEADEML++GF  D+  I++    ++ + MFS
Sbjct: 123 IVVATPGRLMDHYKHHSIDLAHVTQVVLDEADEMLNMGFYKDVRHIIELMKARKSLSMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K 
Sbjct: 183 ATISREVMDIGWLYQNNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDGR  + +ATDVAAR
Sbjct: 243 VMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGRLAILVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++  + E+  HR GRTGRA ++G+S        ++R + L R
Sbjct: 303 GIDVSDVDAVINYDVPGDNEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR 357


>gi|195144578|ref|XP_002013273.1| GL23489 [Drosophila persimilis]
 gi|194102216|gb|EDW24259.1| GL23489 [Drosophila persimilis]
          Length = 649

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 178/370 (48%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 212 LPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIVHINNQQ 271

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 272 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 330

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +   G N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 331 IVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 390

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 391 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYDT 450

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 451 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 510

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 511 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 570

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 571 DVLREANQEI 580


>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
 gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
          Length = 521

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 194/368 (52%), Gaps = 5/368 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+   GY   T +QE  +   L  +DVL  AQTG+GKT +F L +  
Sbjct: 7   TFADLGLSDEVVSAVVTSGYTKPTPIQEKAIPYVLMGRDVLGCAQTGTGKTASFTLPMID 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   +   A  P +L IAPTRELA QV          T + +A+ IGGVS+  +   
Sbjct: 67  ILSAGRAK---ARMPRSLIIAPTRELAAQVSENFVKYGQNTRLSMALLIGGVSMGDQEAK 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH     + ++ +K +V+DEAD MLD+GF  D+E I+   P  R
Sbjct: 124 LDRGVDVLIATPGRLLDHFERGRILLTDVKILVIDEADRMLDMGFIPDVERIVSLLPTIR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT++P I  LA  +  +   V++ +      ++    V  ++ D+ +A+ ++L+
Sbjct: 184 QTLFFSATMAPEIKRLADKFLMNPKEVSVDAPASAAENVAQHLVRCSVKDKRDALRSLLK 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A++FC+ +  +    + L  +  + V L G++SQ  R+  L   + G AR+ I 
Sbjct: 244 SETVDSALIFCNRKRDIGVLHRSLQRYGIEAVQLHGDMSQPARTETLAKFKAGEARLVIC 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +DVAARGID+  L  V + ++ S+ E+ +HR GRTGRAG  G +  +      +    + 
Sbjct: 304 SDVAARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKLLSAVE 363

Query: 361 REANVSVV 368
           R   + + 
Sbjct: 364 RLIGMKIP 371


>gi|46117016|ref|XP_384526.1| hypothetical protein FG04350.1 [Gibberella zeae PH-1]
 gi|91206844|sp|Q4IEK8|HAS1_GIBZE RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 590

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/479 (25%), Positives = 214/479 (44%), Gaps = 17/479 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE +   +   +A++E  +  +T +Q   + P L  +DVL +A+TGSGKT+AF + + 
Sbjct: 115 QSFEELKLSEKTMKAINEMKFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVI 174

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + RF P +    + ++PTRELA+Q+      L A       + IGG +   E  
Sbjct: 175 EML--SSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAE 232

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G ++++ TPGRL DH++       +LK++V+DEAD +L++GF D++  I+   PK+
Sbjct: 233 KLAKGVNLLIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKVLPKE 292

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R  M  +            ++       + V+   +      ++   ++     R   +
Sbjct: 293 DRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQYSTVEGLEQGYIICETDMRFLLL 352

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + + 
Sbjct: 353 FSFLKRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ 412

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQR 354
              I TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  N   
Sbjct: 413 GTLICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNNKGRSLMFLQPNELG 472

Query: 355 RAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-- 411
               L + A V V     P+ + I  +   ++++    +L+    D  +      A H  
Sbjct: 473 FLSHL-KAARVPVAEFNFPTKKIINVQSQLEKLISQNYYLNKSAKDGYRSYMHAYASHSL 531

Query: 412 ----DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
               D  K+    +         P     +     RD+ +   RA+           GS
Sbjct: 532 RSVFDINKLDLAKVAKSFGFTQPPRVDITLGASMSRDKKQQGRRAYGSQPRQNQAAAGS 590


>gi|332253514|ref|XP_003275885.1| PREDICTED: probable ATP-dependent RNA helicase DDX49 [Nomascus
           leucogenys]
          Length = 483

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 201/479 (41%), Gaps = 25/479 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD----NAIVNI 238
           L+FSAT++  +  L              +       +D R +LV    +D    + I   
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQCF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKH 411
           +  +    +     E A  ++ + + +  R  +  + L++   DEKK ++      L   
Sbjct: 363 IEEQIKKKLEEFSVEEAKVLQILTQVNVVR-RECEIKLEAAHFDEKKEINKRKQLILEGK 421

Query: 412 DPEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           DP+  A   A   +I +      E++          +     R  +   GS      S 
Sbjct: 422 DPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGKAGHKGRPPRTPPGSHSGPVPSQ 480


>gi|313497676|gb|ADR59042.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 440

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLK 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     +L + PTRELA Q  ++++     T V   +  GG     +   L+    
Sbjct: 67  GG---RVEIRSLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 124 VLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++     +L     
Sbjct: 184 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETF 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 244 DKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 304 ARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 363

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 364 QQFERRVIKEVK 375


>gi|315608792|ref|ZP_07883768.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
 gi|315249486|gb|EFU29499.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella buccae
           ATCC 33574]
          Length = 579

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/474 (25%), Positives = 214/474 (45%), Gaps = 24/474 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL +  + + T VQE  +   L+  DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   DLNDNVLDALYDMRFDSCTPVQEKCIPEILKGNDVLGVAQTGTGKTAAYLLPILSKLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P  A   + ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 65  -DGGYPKDAINCVIMSPTRELAQQIDQAMQGFGYYLNGVSSVAVYGGNDGNRYDQELKSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+ TPGRL  HI    +++S +   VLDEAD MLD+GF +DI  I    P   +
Sbjct: 124 RLGADVVIATPGRLISHISLGNVDMSKVSYFVLDEADRMLDMGFSEDILQIAKLLPDTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPAKIEELAKTLLKNPVEI-KLAVSKPAEKIKQEAYVCYETQKLGIIKDIFKA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+FC ++  V +    L         +  +L Q ER + +   + G+  V +AT
Sbjct: 243 GDLKRVIIFCGSKMKVKQVNAALQRKHINCGEMHSDLEQAERDDIMFKFKSGQLDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G ++ ++ ++     +++ +
Sbjct: 303 DIVARGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGRAITLVSEDDIYHFQQIEK 362

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                V   P P+           + + P +    +  + +       + D ++      
Sbjct: 363 FLEKEVEKIPLPAD----------LGEAPEYTRQSRPSKGRTTAKSRRRKDRDQ------ 406

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           + HR                 R+  R  +   +  G      +  S   L+ G 
Sbjct: 407 QAHRHKPNNQRRPARPEQDKEREAARPANATEQSAGDKPRRNRRQSEARLAEGK 460


>gi|226229150|ref|YP_002763256.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
 gi|226092341|dbj|BAH40786.1| ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27]
          Length = 498

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 192/406 (47%), Gaps = 11/406 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + + L E G+   T +Q   + P L  +DVL  A TGSGKT AF L +  
Sbjct: 4   TFSSLQLHPSLQQGLKELGFARPTPIQGEAIPPALEGRDVLACAMTGSGKTYAFLLPILH 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+++     P     AL + PTRELA Q+   L+ +   T +  A   GGV +  +   
Sbjct: 64  QLMSK-----PRGNTRALVLTPTRELAAQILESLQDVTTHTPLTGAAVFGGVGMGPQEHA 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            ++G  ++V TPGRL DH R     +  L+ +VLDEAD MLD+GF  +I+ IL   P ++
Sbjct: 119 FRSGVDVIVATPGRLLDHFRQPYAKLDQLEYLVLDEADRMLDMGFLPEIKKILRHLPNRK 178

Query: 181 RML-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R    FSAT+ P I  L +      V +N+  +      I      V+   +   +V +L
Sbjct: 179 RQTLFFSATMPPPIAALTQEMLNKPVTLNLQRQAAPAKGITQAVYPVSQELKSALLVALL 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      A+VF  T+   +R    L     +   + G  SQ +R+ AL   +DG  +V +
Sbjct: 239 KRGDMPQALVFTRTKHRANRLASQLVTAGIKAERIHGNRSQSQRTQALAGFKDGSYQVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  L  V++ ++    E+ +HR GRT RA   G +   +    +   + +
Sbjct: 299 ATDIAARGIDVEALGHVVNFDVPVAAEDYIHRVGRTARAEATGEAFTFVSPEEEGELKLI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            R    ++     P  +    +  Q++  +    + I    KK  +
Sbjct: 359 ERAIKRALPRVTVPDFDY-HAKPTQKL--EVPIAERIAEIRKKKAE 401


>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
 gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
          Length = 505

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 32  EPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 91

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 92  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 150

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT
Sbjct: 151 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSAT 210

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 211 FSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEHAL 270

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 271 VFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 330

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 331 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 390

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 391 REEEPGFEA 399


>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 483

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  EPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLALMLEKAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|269968866|ref|ZP_06182847.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
 gi|269826516|gb|EEZ80869.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio
           alginolyticus 40B]
          Length = 421

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/369 (33%), Positives = 195/369 (52%), Gaps = 6/369 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + E L     V  T VQE  +   L  K++L +AQTG+GKT AFGL +  T
Sbjct: 9   FADLGIEQKLIETLGNLNIVTPTPVQEKSIPHVLAGKNLLAAAQTGTGKTAAFGLPIIQT 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +    +    P AL + PTRELA QV   L    A+T + +    GG S+  ++R L
Sbjct: 69  VQQKKLNGT----PQALILVPTRELAQQVFDNLNQYSAETELRIVCVYGGTSIGVQKRKL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    +NIS    +VLDEAD MLD+GF  D++ I    P +++
Sbjct: 125 EEGADILIATPGRLLDHLFNGNVNISKTGMLVLDEADRMLDMGFWPDLQRIFRRLPAEKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    I T+A    +  V V ++  N     +      V    +   +  ++  
Sbjct: 185 ILLFSATFEKRIKTIAYKLMESPVEVEVSPANTTAETVTQMVYPVDKKRKRELLAYLIGS 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 245 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRAG+ G++V ++ ++ +   + +  
Sbjct: 305 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLQAIEN 364

Query: 362 EANVSVVWE 370
             +  +  E
Sbjct: 365 LLDQRLPQE 373


>gi|322488123|emb|CBZ23369.1| putative nucleolar RNA helicase II [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 684

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 200/435 (45%), Gaps = 19/435 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +   + +AL  RG  ++  VQ    N  +R  DVLV A+TGSGKT+AFG+ +  
Sbjct: 88  FSEFE-MNPTVVKALQSRGIESMFPVQALTFNAIMRSTDVLVQARTGSGKTLAFGIPIVE 146

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL           P A+   PTRELA+QV   L       G+VV    GGV+   + R 
Sbjct: 147 RLLKLPSHLIRGRGPAAVIFCPTRELAIQVQDVL--CGISCGLVVTALYGGVAYANQERV 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV TPGR  D +    L+   +    LDEAD MLD+GF+DDIE +L    ++ 
Sbjct: 205 LRSGVDIVVATPGRAKDFLEKGTLHFDRVVMACLDEADHMLDIGFKDDIELLLSQVAEQN 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +     +   +   A   +       IA +      +   AV  A + +         
Sbjct: 265 GSVGAEKPVHQTLLFSATVPEWVHTCSFIAKDKEFIDMVGKEAVRTASTIKFYRRKCNFS 324

Query: 241 YHGAK-------------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +                +VF +T+      +    +   Q +   G++ Q++R + +
Sbjct: 325 EISSMLADLIKVYSGAHGRTLVFTNTKKDCHDLSINNTKLDSQCL--HGDMQQEQRESTM 382

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V +
Sbjct: 383 KSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCVLL 442

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDV 406
                +   ER+ R A +     PAP+ E I +  A+   +D   ++             
Sbjct: 443 YQPREEYVVERIERHAKMKFDVLPAPTREEILKAVARDAAEDLARVERRATNLFMDQAAE 502

Query: 407 LLAKHDPEKIAAGFL 421
           LL   DP +I A  L
Sbjct: 503 LLKDADPVEILASAL 517


>gi|296475821|gb|DAA17936.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
          Length = 729

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 194/449 (43%), Gaps = 22/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +      +D++  AQTGSGKT AF L + +
Sbjct: 291 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILA 350

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 351 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 410

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 411 IRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 470

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 471 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 530

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 531 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 590

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 591 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 650

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             +              +P   V +  ++D    L++  F     G        + A  D
Sbjct: 651 DSQL------------AQPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVD 698

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             K   G   ++ AG  + +   PV   S
Sbjct: 699 TRKNYHGKSSLNTAGFSSTQAPNPVDDES 727


>gi|297742547|emb|CBI34696.3| unnamed protein product [Vitis vinifera]
          Length = 438

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 172/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 66  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 125

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 126 IDPDNNVI------QVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRL 179

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 180 YQPVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQ 239

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y K    +N+  E             V    + + +  +   
Sbjct: 240 ILMFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 298

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 299 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 358

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 359 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 418

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 419 ELGAEIKQIPPHIDQAI 435


>gi|258617566|gb|ACV83780.1| DEAD box ATP-dependent RNA helicase-like protein [Heliconius
           melpomene]
          Length = 646

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 10/374 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F+  N P  I   + E+G+   T +Q       L  +D++  A TGSGKT+A+ L  A
Sbjct: 235 QVFDEGNFPDHIMNTIKEQGWEEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAA 294

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++ +  R      P+AL +APTRELA Q+    +   A   +      GG     + R
Sbjct: 295 VHIVHQQ-RIQRGDGPIALILAPTRELAQQIQSVAQAYSAHGCIRNTCLFGGSPKGPQAR 353

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 354 DLERGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 413

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAI 235
           R++LM+SAT    I  LA+++  D V+VN      S N     I           +   +
Sbjct: 414 RQVLMWSATWPKEIQALAEDFLTDYVKVNIGSLNLSANNNIKQIIEVCEEHEKEVKLTNL 473

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        IVF  T+  V    + +  +  + +A+ G+ SQQER   L   R+G  
Sbjct: 474 LKEIASEKDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQQERDAVLTEFRNGAT 533

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVAARG+D+ D++ V++ +  +  E+ +HR GRTGR  + G +         R+
Sbjct: 534 TILIATDVAARGLDVEDVKFVVNFDYPNTSEDYIHRIGRTGRCQQSGTAYTYFTSGDARQ 593

Query: 356 AERL---FREANVS 366
           A  L    RE   +
Sbjct: 594 ARSLLAVLRETGQN 607


>gi|163739630|ref|ZP_02147039.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
 gi|161387089|gb|EDQ11449.1| DEAD/DEAH box helicase-like protein [Phaeobacter gallaeciensis
           BS107]
          Length = 458

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 202/377 (53%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   ++E GY + T +Q   +   L  +DVL  AQTG+GKT AFG+ L + ++   
Sbjct: 25  LPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQMMQYG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A     L +APTRELA Q+   L+ L   T +   + +GGVS++ +   L  G  
Sbjct: 85  RKPA-AKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLSRGTD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 144 ILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQTMLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y +  VR+ +    +    I      +A +++ + +  +L  H  + 
Sbjct: 204 ATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAHKDER 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  K L+   F   A+ G  SQ +R  AL   + G  ++ +ATDVAAR
Sbjct: 264 TLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + + +  N++
Sbjct: 324 GLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKTMNLN 383

Query: 367 V------VWEPAPSVEA 377
           +       WE  P  +A
Sbjct: 384 IPVASGRPWEVLPDAKA 400


>gi|116206328|ref|XP_001228973.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
 gi|121789113|sp|Q2HBE7|DED1_CHAGB RecName: Full=ATP-dependent RNA helicase DED1
 gi|88183054|gb|EAQ90522.1| hypothetical protein CHGG_02457 [Chaetomium globosum CBS 148.51]
          Length = 688

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 19/385 (4%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +  
Sbjct: 199 TFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLMACAQTGSGKTGGFLFPIMH 258

Query: 61  TLLAENDRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
               +     PA +          P AL +APTREL  Q+  E      ++ V   V  G
Sbjct: 259 QSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIYEEARKFAYRSWVRPCVVYG 318

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I 
Sbjct: 319 GADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIR 378

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I       +  +R+ LMFSAT    I  LA+++  D V +++        +I  +   V
Sbjct: 379 RIVQGEDMPTTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVEYV 438

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D+ + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 439 EDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERA 498

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L++ R+G+  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++  
Sbjct: 499 LELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATA 558

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  V 
Sbjct: 559 FFNRGNRGIVRELLDLLKEANQEVP 583


>gi|167624931|ref|YP_001675225.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354953|gb|ABZ77566.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/399 (28%), Positives = 192/399 (48%), Gaps = 3/399 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY + T +Q   +   L +++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPILEML--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELAVQV   +        +      GGV    +R  L  G  
Sbjct: 66  SETQRKKRIRALILTPTRELAVQVEDNISQYGKHLALTSMAMYGGVDSKPQRERLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L+ +VLDEAD MLD+GF +DI  I++  P  R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDELEILVLDEADRMLDMGFIEDINKIMEKLPVDRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA+      + +++         I+   V V    +   + ++++ +  + 
Sbjct: 186 ATLSRQVKELARATIVRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +       + G  SQ+ R   L   + G+  + IAT +AAR
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKAGKIGLLIATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L LVI+ +L    ++ +HR GRTGRAG  G +V ++ ++  +    +       
Sbjct: 306 GLDIDELPLVINYDLPYPADDYIHRIGRTGRAGASGEAVALVSKDDFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +         A R+     IL        I G +KK   
Sbjct: 366 IERREIEGF-APRKEVPVSILNYKPKSKQIAGGDKKPHR 403


>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
 gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
          Length = 407

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   +   ++  S  R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V
Sbjct: 240 HIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFREGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
           [Acyrthosiphon pisum]
          Length = 516

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   +   G+   T +Q       +  K+++  AQTGSGKT+ + L     +  +
Sbjct: 108 NFPDYVMTVIRNEGFTEPTPIQAQGWPIAMSGKNMVGVAQTGSGKTLGYTLPAVVHINNQ 167

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +        T +      GG     + RDL NG 
Sbjct: 168 EP-LKKGDGPIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDLMNGV 226

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM+
Sbjct: 227 EIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDRQVLMW 286

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA ++  D +++N+ S     N                D+   ++  +  
Sbjct: 287 SATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKEDKLMDLLQDIAN 346

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T+ +     + V + G+ SQ ER + L+  R GRA + +AT
Sbjct: 347 MEENKTIIFAETKRKVDTITRKITNMGARAVGIHGDKSQSERDHVLKQFRGGRANILVAT 406

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ +KG S      +  ++A+ L  
Sbjct: 407 DVAARGLDVDDVKFVINFDYPNNSEDYIHRIGRTGRSSQKGTSYAFFTHSNSKQAKDLVA 466

Query: 360 -FREANVSVVWE 370
              EAN  +  +
Sbjct: 467 VLTEANQRIDPK 478


>gi|117621455|ref|YP_855288.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 416

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 190/370 (51%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+E GY   T VQ + +   L  +D++  AQTG+GKT AF L L   LL   
Sbjct: 11  LSPRLQQTLTELGYAAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLQNP 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P     AL + PTRELA+QV   +      T +   +  GGVS+  +   L+ G  
Sbjct: 71  TNDAP-RPIRALVLVPTRELAIQVHESVTRYAKGTDLTSTLVYGGVSIAAQVEALKAGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL DH+R   L+++ L  +V DEAD MLD+GF D+I+ +L   P  R+ L+FS
Sbjct: 130 ILIATPGRLLDHLRQGALSLAALHHLVFDEADRMLDMGFMDEIKELLKQIPADRQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+K    D   + +A  N   ++++ R   V    +   + ++L   G   
Sbjct: 190 ATCDDNLFALSKVLLHDPELIEVAPRNTTAAEVEQRVYTVDGDRKLALVEHMLNVKGWAP 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAAR
Sbjct: 250 ALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLEFRAGTLQALVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL  VI+ E     E+ +HR GRTGRAG KG+++ +         E++    +  
Sbjct: 310 GLDISDLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVLDTR 369

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 370 LPQQWFPGFE 379


>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
 gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
 gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
 gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
          Length = 407

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   +   ++  S  R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|70945363|ref|XP_742509.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521533|emb|CAH79576.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 429

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L   
Sbjct: 58  FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                +          L + PTRELA+Q    ++ L     +   V  GG S+  +   L
Sbjct: 118 CNTHKNFI------QGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRL 171

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+ GTPGR+ D       N+S    +V+DEAD++L   F+  +E ++   PK+++
Sbjct: 172 YNAVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LM+SAT    +    + Y  DA  +N+  E             V    + + +  +   
Sbjct: 232 ILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGI-TQYYAFVKERQKVHCLNTLFAK 290

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  +    +   +SQ  R+      R+G  R  +++
Sbjct: 291 LQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSS 350

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++  
Sbjct: 351 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIEL 410

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 411 ELGTEIQPIP 420


>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 448

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 119/417 (28%), Positives = 211/417 (50%), Gaps = 22/417 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +    V+ E   + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 19  KTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPIL 78

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TLL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +  
Sbjct: 79  QTLLESPQR------LYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSL 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+V+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 133 ALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 192

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   KD V+  ++S+ +    +    V +    +D+ +V I
Sbjct: 193 DRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYI 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 253 LNELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKSRSIL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 313 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 372

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +       +   P                ++ + L+    + ++   + L +H  +K
Sbjct: 373 IEHLIGKKLPAFPTQE-------------EEVMMLNERVSEAQRFARIELREHGEKK 416


>gi|291231214|ref|XP_002735561.1| PREDICTED: Ddx49-A-prov protein-like [Saccoglossus kowalevskii]
          Length = 445

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 19/409 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +     G    T +Q   +   L   D L  A+TGSGKT AF L +   L  + 
Sbjct: 19  LNDWLVKQCKAVGITKPTPIQYYCIPQILEGVDCLGCAKTGSGKTAAFALPILQKLCEDP 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +   L    G+  AV IGG  V R+  DL +  H
Sbjct: 79  ------YGIYALVLTPTRELAFQIAEQFRILGKPIGLKDAVIIGGRDVMRQGMDLADKPH 132

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DHI      ++  +K +VLDEAD +L+  F +D++ I D+ P+KR+ L+F
Sbjct: 133 VVIATPGRLADHINSSNTFSLKKIKFLVLDEADRLLEDTFAEDLQVIFDALPEKRQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRY 241
           SAT++  +  L              +E      +D + VL+    RD  +V+I       
Sbjct: 193 SATLTDKLEKLQTLALNKPFFWQSKAEIATVEQLDQKYVLIPAKVRDAYLVHILQKICSE 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + I+F +T  +      +L    F    L   + Q++R  +L   + GR R+ +AT
Sbjct: 253 TEDYSMIIFSNTCKNCQSLYLMLKALEFPCTPLHSMIPQRDRIASLAQFKSGRVRILLAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+P ++LV++  +  +P + +HR GRT RAGR GM++ ++ Q   +  E + +
Sbjct: 313 DVASRGLDIPIVQLVVNHNVPWSPIDYVHRVGRTARAGRGGMALTLMTQYDVKLIEAIEK 372

Query: 362 EANVSVVWEPAPSVE--------AIRERDAQRILQDPLFLDSIQGDEKK 402
           + N  +   P    E        ++ +R+A+  L++  F +    +++K
Sbjct: 373 QINTKLTEYPVDDKEVLTILNEVSVAKREAEMRLEEQDFGERKTINKRK 421


>gi|325983695|ref|YP_004296097.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
           AL212]
 gi|325533214|gb|ADZ27935.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
          Length = 445

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 200/379 (52%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++ERGY   T +Q+  +   L   D+L  AQTG+GKT  F L +   L  ++
Sbjct: 8   LSDEIIRAVTERGYTVPTPIQKQAIPAVLTGADLLAGAQTGTGKTAGFTLPILHRLSDKS 67

Query: 67  DRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      P   AL + PTRELA QV   +        +   + IGGV+++ +   L++ 
Sbjct: 68  VKGPSTGRPPIRALILVPTRELAAQVEESVRDYGKYLKLSSMMMIGGVNINPQITRLKSR 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL DH++ K L++S ++ +VLDEAD MLD+GF  DI+ IL   PK+R+ L+
Sbjct: 128 VDILVATPGRLLDHVQQKTLSLSQIEILVLDEADRMLDMGFIRDIKKILALLPKQRQNLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA +       +  A  N     + +    V    + + + ++++ HG 
Sbjct: 188 FSATFSDEIRALADSLLNQPALIEAARRNAIADKVTHVVHPVDRERKRHLLAHLIKQHGW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+   ++  + L       +A+ G  SQ  R+ AL   + G  +V +ATD+A
Sbjct: 248 SQVLVFTRTKHGANKLAEFLTADGIPALAIHGNKSQTARTTALAKFKTGSLQVLVATDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ +L  V++ EL   PE+ +HR GRTGRAG +G +V ++  +  +    + +   
Sbjct: 308 ARGIDINELPHVVNFELPQVPEDYVHRIGRTGRAGAEGDAVSLVCVDELKLLTAIEKLIK 367

Query: 365 VSVV------WEPAPSVEA 377
             +       +EP P ++A
Sbjct: 368 HELRSHVIAGFEPDPRIKA 386


>gi|110638219|ref|YP_678428.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280900|gb|ABG59086.1| ATP-dependent RNA helicase protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 413

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/369 (33%), Positives = 192/369 (52%), Gaps = 5/369 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  ++   I ++L+E G+   T +Q   + P L  +DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FESYDLAPGIKKSLAEAGFNRPTDIQFKSIPPILAGEDVLAIAQTGTGKTAAFVIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +TL+  N + S  +    L +APTRELAVQ+    + + A T +      GGV    + 
Sbjct: 60  LNTLI--NVKKSEHTDISCLVMAPTRELAVQISEVFKKIGAYTRLRTVCITGGVEQEAQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                G  I+V TPGR+ D I  K + I+ +K +VLDEAD MLDLGF  DI+ +    P 
Sbjct: 118 AAADYGIDILVATPGRMFDLIYQKHIKITRVKILVLDEADHMLDLGFIKDIQDVKKFLPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L FSATI+  I  LA +  K+ +R+ IA ++R   +I +    + + D+   +  +
Sbjct: 178 RHQTLFFSATINEEIKKLAYSLVKNPIRIQIAPKDRVSKNITHSVAFIGMDDKRFFLERL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H     IVF  T+    R    +     + V + G   QQ R  A+   ++G   V 
Sbjct: 238 LKEHPESKVIVFVRTQVRADRVQAAMERVGLKSVTMHGGKEQQARDAAMDAFKNGTVHVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD++ARGID+  +E V++ ++    EN +HR GRTGR   KG ++       +   + 
Sbjct: 298 IATDISARGIDIAGVEYVVNYDMPEVAENYVHRVGRTGRGVSKGFAISFCSMEEKPVLDE 357

Query: 359 LFREANVSV 367
           +       +
Sbjct: 358 VEEFLGKEI 366


>gi|307104817|gb|EFN53069.1| eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A)
           [Chlorella variabilis]
          Length = 410

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L   
Sbjct: 43  NLHENLLRGIYAYGFEKPSAIQQKGIVPFGKGLDVIQQAQSGTGKTATFCAGILQNLDYT 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L     V    C+GG SV  + R LQ+G 
Sbjct: 103 ------LVECQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDTRILQSGV 156

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 157 HVVVGTPGRVYDMLRRRALRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 216

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I      +     + + + ++      
Sbjct: 217 SATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAI 276

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  + E    V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 277 TQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLL 336

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +NPEN LHR GR+GR GRKG+++  +  + +R  + + R  N
Sbjct: 337 ARGIDVQQVSLVINYDLPNNPENYLHRIGRSGRFGRKGVAINFVTNDDERLLQDIQRFYN 396

Query: 365 VSVVWEPAPSVEAI 378
             +   P+   + I
Sbjct: 397 TVIEELPSNIADLI 410


>gi|115444197|ref|NP_001045878.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|75325389|sp|Q6Z2Z4|IF4A3_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23;
           AltName: Full=eIF4A-2
 gi|45736055|dbj|BAD13081.1| putative translational initiation factor eIF-4A [Oryza sativa
           Japonica Group]
 gi|113535409|dbj|BAF07792.1| Os02g0146600 [Oryza sativa Japonica Group]
 gi|125538069|gb|EAY84464.1| hypothetical protein OsI_05839 [Oryza sativa Indica Group]
 gi|215707096|dbj|BAG93556.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222622164|gb|EEE56296.1| hypothetical protein OsJ_05367 [Oryza sativa Japonica Group]
          Length = 414

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 194/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              +L +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 393

Query: 358 RLFREANVSVVWEPA 372
            + R  NV++   PA
Sbjct: 394 DIQRFYNVTIEELPA 408


>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 479

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 121/412 (29%), Positives = 208/412 (50%), Gaps = 13/412 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I EA+   G+   + +Q+  +   L  KD++  A+TGSGKT AF + +  +LL    R  
Sbjct: 39  ICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLHNPQR-- 96

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA Q+G + E L A  G+  A  +GG+ + +++  L    H+V+ 
Sbjct: 97  ----LYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIA 152

Query: 131 TPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           TPGRL DH+      ++  +K +VLDEAD ML + F ++I  I+   P  R   +FSAT+
Sbjct: 153 TPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATM 212

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  L +   KD V+V I  +      +    + +    +D  +  +L     ++ ++
Sbjct: 213 TSKVRKLQRASLKDPVKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLNEVAGQSVLI 272

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F ST     + T +L    FQ + L G++ Q  R  AL   +     V + TDVA+RG+D
Sbjct: 273 FASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVASRGLD 332

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P +++VI+ ++ ++ ++ +HR GRT RAGR G+++  + Q      +R+       +  
Sbjct: 333 IPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQRIEHLLGTKLDA 392

Query: 370 E--PAPSVEAIRER--DAQRI--LQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                 +V  I ER  +AQRI  ++      +  G ++        + D E+
Sbjct: 393 YSCEEETVLVITERVNEAQRIATIEMKEAAANGTGIKRGRYARDDNEGDDEE 444


>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
 gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
          Length = 467

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 127/388 (32%), Positives = 204/388 (52%), Gaps = 11/388 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+      ++ E GY++ T +Q   +   L+ KD++ SAQTG+GKT AF L +  
Sbjct: 34  TFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+          +L + PTRELA QV    +      G+      GGVS+  + + 
Sbjct: 94  LLRVEDKP--KRLQVHSLILTPTRELAAQVEANAKGYTKYLGIRSDAVFGGVSIRPQVKR 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  I+V TPGRL D I  K +   +LK +VLDEAD MLD+GF  DI+ +++  PKKR
Sbjct: 152 LQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRMLDMGFIRDIKKVIEFLPKKR 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + +MFSAT S  I  LA     D V +  + +N+    I++      ++ + + + ++++
Sbjct: 212 QNMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMARKVDLLCHLIK 271

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF  T+    +  K+L     +  A+ G  SQ  R+ AL+  ++G  ++ +A
Sbjct: 272 TNEWKQVLVFARTKHGADKVVKILCHQHIKASAIHGNKSQGARTRALEGFKNGDVKILVA 331

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  VI+ +L +  E+ +HR GRTGRAG  G ++ ++        + + 
Sbjct: 332 TDIAARGIDIHQLPYVINLDLPNVAEDYVHRIGRTGRAGENGHAISLVAAEEALLLKAIE 391

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           +         P P V  +     Q+IL+
Sbjct: 392 KFIG-----NPLPKVAVV--GFEQKILK 412


>gi|302754310|ref|XP_002960579.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
 gi|302771598|ref|XP_002969217.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300162693|gb|EFJ29305.1| hypothetical protein SELMODRAFT_91413 [Selaginella moellendorffii]
 gi|300171518|gb|EFJ38118.1| hypothetical protein SELMODRAFT_164382 [Selaginella moellendorffii]
          Length = 401

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 197/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   I + +   + E G+   +++Q+  L P +R +DV+  AQ+G+GKT   G+A+
Sbjct: 27  ITQFEKMGINESLLRGVFEYGFERPSAIQQRALIPIMRGRDVIAQAQSGTGKTSMIGIAV 86

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  + +  L +   V    CIGG S   + 
Sbjct: 87  NQLID------TSVREVQALVLSPTRELADQTAKVVLTLGSHMNVQAHTCIGGKSFSEDI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+ D ++ +     H+K +VLDE+DEML  GF++ I       P 
Sbjct: 141 RKLEHGVHVVSGTPGRVYDMLKRRTFRTRHVKILVLDESDEMLSRGFKEQIIDCYRYLPP 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 201 DLQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   ++ +    F V ++ GE+ Q+ER   ++  R+G+ RV
Sbjct: 261 LYDTLTITQAVIFCNTKRKVEWLSEKMRSSNFTVSSMHGEMPQKERDTIMKEFREGQTRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 321 LITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIRILR 380

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  V   P    + I
Sbjct: 381 DIEQYYSTQVDEMPMNVADLI 401


>gi|145608086|ref|XP_360845.2| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
 gi|152013507|sp|A4R715|DHH1_MAGO7 RecName: Full=ATP-dependent RNA helicase DHH1
 gi|145015595|gb|EDK00085.1| hypothetical protein MGG_03388 [Magnaporthe oryzae 70-15]
          Length = 524

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 11/373 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +    T
Sbjct: 38  FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALET 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG ++  +   L
Sbjct: 98  INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRL 151

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 152 QDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 211

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +     +   +N+  E             V    + + +  +   
Sbjct: 212 VMLFSATFPISVKEFSDKNMTNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 270

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ QQ R+      R+G  R  + +
Sbjct: 271 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNGVCRNLVCS 330

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +     + R
Sbjct: 331 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLISWEDRFNLYNIER 390

Query: 362 EANVSVVWEPAPS 374
           +    +  +P PS
Sbjct: 391 DLGTEI--QPIPS 401


>gi|121704610|ref|XP_001270568.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142981101|sp|A1CJ18|DHH1_ASPCL RecName: Full=ATP-dependent RNA helicase dhh1
 gi|119398714|gb|EAW09142.1| ATP dependent RNA helicase (Dhh1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 503

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
           MBEL55E]
          Length = 445

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 198/415 (47%), Gaps = 10/415 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + +AL+++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R     AP  L + PTRELA+QV ++ E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
             +FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TFLFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADSYEHKVKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   +++L +   +   L GE++Q +R+NA+  +++G   + +
Sbjct: 244 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 363

Query: 360 FRE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            R         ++    P  +A ++ + + + +        + +EK+      AK
Sbjct: 364 KRYTEELLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREEKRKTTQKKAK 418


>gi|322834137|ref|YP_004214164.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321169338|gb|ADW75037.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 442

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 122/427 (28%), Positives = 197/427 (46%), Gaps = 13/427 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + EAL ++GY   T +Q   + P +  +DVL SA TG+GKT AF L  
Sbjct: 3   VTTFSELELDERLIEALGDKGYSRPTVIQAEAIPPAMDGRDVLGSAPTGTGKTAAFLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEQARELAKHTELDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADRMLDMGFAQDIETISAEARW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ L+FSAT           +   +        S   +   + +      L+ +   ++
Sbjct: 181 RKQTLLFSATLEGEAIREFAERILTEPVEIEADPSRRERKKILQWYYRADDLAHKTRMLI 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+      +++F   R  V      L E       L GE+ Q +R+ A++ M + R  
Sbjct: 241 HLLKQEDVTKSVIFVRKRERVHELVAWLREAGINSCYLEGEMVQVKRTEAVKRMVEDRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATD+AARG+D+ D+  V + +L    +  LHR GRTGRAGRKG ++  +  +     
Sbjct: 301 VLVATDIAARGLDINDISHVFNFDLPLTADIYLHRIGRTGRAGRKGTAISFVEAHDHLLL 360

Query: 357 ERLFREANVS----VVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLA 409
            ++ R  N      V+ E  P  +A  E+   +  +  L           EK  V V + 
Sbjct: 361 GKIGRYLNEPLKARVLDEFRPKTKAPSEKVTGKPSKKVLAKRKEKQKAAQEKSKVKVKVR 420

Query: 410 KHDPEKI 416
             D + +
Sbjct: 421 HRDSKNV 427


>gi|143636073|gb|ABO93350.1| vasa-like protein [Hydractinia echinata]
          Length = 680

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 9/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + + +  Y+  T VQ+  +   L ++D++  AQTGSGKT AF L + ++++   
Sbjct: 230 LSESIQKNIEKAKYLKPTPVQKYAIPIILGDRDLMSCAQTGSGKTAAFLLPVLASIMQHK 289

Query: 67  DRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           D+     S   APL L IAPTRELA Q+ +E      +T V   V  GGVSV  + R +Q
Sbjct: 290 DQLTSQLSEVQAPLGLIIAPTRELANQIYQEARKFSFQTSVRPVVVYGGVSVAYQLRQVQ 349

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
           +G H++VGTPGRL D I  + +++ +LK +VLDEAD MLD+GF  D++ I+         
Sbjct: 350 SGCHLLVGTPGRLKDFIGKRKISLENLKYLVLDEADRMLDMGFMPDVKEIIHGFGMPAKE 409

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  LMFSAT    I  LA  +  + V + I      HSDI+   + V  + + + +V +
Sbjct: 410 DRHTLMFSATFPEEIQKLAGEFLNNYVFLTIGKVGSTHSDIEQTVIEVDNASKRDKLVEM 469

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L   G    +VF  T+         L ++ F   ++ G+  QQ+R  AL+  R G+  V 
Sbjct: 470 LGQEGGNKNLVFVQTKRQADFLASYLCQNGFPTTSIHGDRFQQQREEALREFRAGQQTVL 529

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAE 357
           IAT VAARG+D+ D++ VI+ +L    E  +HR GRTGR G KG +     + N +  A 
Sbjct: 530 IATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGRATSFFSRGNDEALAR 589

Query: 358 RLFR 361
            L +
Sbjct: 590 ALVK 593


>gi|256077147|ref|XP_002574869.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660085|emb|CAZ31102.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 401

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT   G+++   L  + 
Sbjct: 35  LRDDLLRGIYAYGFERPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATLGISILQMLDTQ- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q+ + +  L     V    C GG ++  + R L  G H
Sbjct: 94  -----LRETQALVLSPTRELASQIQKVILALGDYMNVQCHACYGGTNIGEDIRKLDYGQH 148

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++ GTPGR+ D IR + L    +K  VLDEADEMLD GF++ I  +    P   ++++ S
Sbjct: 149 VISGTPGRVFDMIRRRSLRTRAVKLFVLDEADEMLDKGFKEQIYDVYRYLPPGTQVVLLS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  + VR+ +  +      I    V +     + + + ++       
Sbjct: 209 ATMPHEILEMTSKFMTNPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTVT 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++FC+T+  V+  T+ + ++ F V ++ G++ Q+ER   ++  R G +RV I TD+ A
Sbjct: 269 QSVIFCNTKRKVAWLTEKMLKNNFTVASMHGDMVQKEREEIMKDFRAGDSRVLITTDLWA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    + +  + 
Sbjct: 329 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYST 388

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 389 QIDEMPM 395


>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
 gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
          Length = 470

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 196/373 (52%), Gaps = 9/373 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I EA  +  +   T +Q   +   L+ +DV+  AQTGSGKT AF + + 
Sbjct: 25  SSFSDLGVIEPICEACEKLHFSAPTDIQAQAIPHALQGRDVIGLAQTGSGKTAAFSIPIL 84

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           A  +APTREL+ Q+ +++E L A  GV  A  +GG+ +  +  
Sbjct: 85  QGLWDDP------RPLFACILAPTRELSYQISQQIEALGATIGVRCATIVGGMDMMTQSI 138

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH+      ++  L+ +V+DEAD +LDL F   I+ +L + PK
Sbjct: 139 ALSKRPHVIVATPGRLQDHLENTKGFSLRSLRYLVMDEADRLLDLDFGPIIDKLLQNIPK 198

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR ++FSAT++  +  L +   ++ VR+ I ++    S +    + +  + +D  +V++
Sbjct: 199 ERRTMLFSATMTTKVAKLQRASLRNPVRIEIGTKYSTVSTLQQYYLFMPFAHKDTYLVHL 258

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                  + IVF  T     R   +L    F  + L G+LSQ  R  AL   + G   + 
Sbjct: 259 ANEQVGHSIIVFTRTVHDAQRLAVLLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIM 318

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P ++LV++ ++ ++ ++ +HR GRT RAGR+G SV ++ Q      +R
Sbjct: 319 VCTDVAARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVTQYDVELLQR 378

Query: 359 LFREANVSVVWEP 371
           +       +   P
Sbjct: 379 IEAAIGKRLDEFP 391


>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
 gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
          Length = 407

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+Q+  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQIADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   D   ++  S  R+   I         ++    ++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNDPAEIDAKSPLRERKKIAQWYHRADDAEHKLELLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITQQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|301601272|dbj|BAJ12168.1| DEAD box protein [Rana rugosa]
          Length = 736

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 13/372 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + + + GYV LT +Q+  +   +  +D++  AQTGSGKT AF L + +
Sbjct: 299 TFEEANLCDTLAKNVCKAGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 358

Query: 61  TLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+ +  +   F     P A+ +APTREL  Q+  +       T V   V  GG      
Sbjct: 359 HLMMKGVQSSAFQALKEPEAIIVAPTRELINQIYLDARKFAYGTCVRPVVIYGGTQTFHS 418

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + +  G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GFR+DIE +L S  
Sbjct: 419 LKQISEGCNILCATPGRLLDIIRKEKIGLTKLRFLVLDEADRMLDMGFREDIENLLRSPG 478

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S    +  ++  K  ++ +             SD+    + V    + 
Sbjct: 479 MPSKEERQTLMFSATFPSSIQSLAKXMLKPDYLFVVVGQVGGACSDVQQEVIEVEEFGKK 538

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + ++ IL+  G++  +VF  T+         L +      ++ G+  Q+ER  AL+  R 
Sbjct: 539 DKLMEILQVIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQRERETALRDFRT 598

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G+  V +AT VAARG+D+ ++  VI+ ++  + +  +HR GRTGR G  G ++    +  
Sbjct: 599 GQCPVIVATSVAARGLDIENVSHVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRG 658

Query: 351 -NMQRRAERLFR 361
            + QR A  L +
Sbjct: 659 DDEQRIARSLVK 670


>gi|242814538|ref|XP_002486388.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218714727|gb|EED14150.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 502

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 47  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTLER 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 107 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 161 NDTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 221 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 279

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 280 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 339

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 340 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 399

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 400 ELGTEIQPIP 409


>gi|212545060|ref|XP_002152684.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
 gi|210065653|gb|EEA19747.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Penicillium marneffei
           ATCC 18224]
          Length = 498

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 47  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTLER 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 107 INPKSTK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 161 NDTVHIIVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 221 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 279

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 280 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 339

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 340 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 399

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 400 ELGTEIQPIP 409


>gi|224286258|gb|ACN40838.1| unknown [Picea sitchensis]
          Length = 411

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 38  ETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L     V V  C+GG S+  + R
Sbjct: 98  QQLNYNVPE------CQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLR 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P  
Sbjct: 152 ILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTN 211

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +  + VR+ +  +      I      +     + + + ++
Sbjct: 212 LQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 272 YETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + 
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 391

Query: 359 LFREANVSVVWEP 371
           + R  NV +   P
Sbjct: 392 IQRFYNVVIEELP 404


>gi|226501258|ref|NP_001151064.1| LOC100284697 [Zea mays]
 gi|194690824|gb|ACF79496.1| unknown [Zea mays]
 gi|195644024|gb|ACG41480.1| eukaryotic initiation factor 4A [Zea mays]
          Length = 410

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 194/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 37  ESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 96

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 97  QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 150

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 151 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 211 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL 270

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 271 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 390

Query: 359 LFREANVSVVWEPA 372
           + R  NV+V   PA
Sbjct: 391 IQRFYNVTVEELPA 404


>gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 467

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/452 (26%), Positives = 205/452 (45%), Gaps = 24/452 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L   + A+ 
Sbjct: 8   LSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQ-MFADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     A+ + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPTQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + I+        ID     V    +   + ++++      
Sbjct: 186 ATLSKQVRVLAKTAVENPVEIEISRNTATAPQIDQWLTTVDKDKKSALLSHLIKEQAWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRDISAEAFHSGRSQAVREQLLADFKSGKLAFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  +    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCAIERRLGHL 365

Query: 367 VVWE-----------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +V +           P   ++ + +   ++  +     +S  G  +   +          
Sbjct: 366 IVRKEVEGFAPKKEVPISILDFVPKHKPEKTFRP---TESAAGTYRSAKEGTFE------ 416

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
                 + HR+    P+  T  +L   R   R
Sbjct: 417 --TAKAKKHRSAKSQPKPTTNATLRPTRTAER 446


>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
          Length = 451

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 123/421 (29%), Positives = 220/421 (52%), Gaps = 15/421 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   + +  A  + GY   T +Q+  L   L++KD++  A+TGSGKT+AFGL +  
Sbjct: 13  TFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGKTLAFGLPILQ 72

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LLA    +       AL ++PTREL VQ+    + + A   +   V +GG+    + + 
Sbjct: 73  HLLANPQPY------YALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDPLAQAKA 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++GTPG++  H+      N+  LK +VLDEAD++L++ F  +I  ILD  PK+
Sbjct: 127 LAQKPHIIIGTPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAILDIIPKE 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  ++ L +   KD V++ ++S+ +  S +    + V    ++  +V +L
Sbjct: 187 RNTYLFSATMTNKVSKLQRASLKDPVKIEVSSKYQTVSTLQQNYLFVPDKYKETYLVYLL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +IVF +T     + T +L    FQ +A+ G++SQ +R ++    +   + + I
Sbjct: 247 NELAGLTSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P ++LV++ ++  N +  +HR GRT RAG+ G ++ ++ Q      +++
Sbjct: 307 ATDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQYDVEMYQKI 366

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +     +   P    + +    R ++A RI    L    +   + K   V     D  K
Sbjct: 367 EQLIEKELSQYPLEESDVMVFYERVQEANRIATQELK--DLLEKKVKKTAVDEDDLDDRK 424

Query: 416 I 416
           I
Sbjct: 425 I 425


>gi|56119116|ref|NP_001007820.1| probable ATP-dependent RNA helicase DDX4 [Bos taurus]
 gi|75071078|sp|Q5W5U4|DDX4_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4
 gi|33332326|gb|AAQ11373.1| DEAD/H box polypeptide 4 [Bos taurus]
          Length = 729

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 194/449 (43%), Gaps = 22/449 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ Q +   +++ GY  LT VQ+  +      +D++  AQTGSGKT AF L + +
Sbjct: 291 TFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILA 350

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 351 HMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHS 410

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  +K +VLDEAD MLD+GF  +++ ++    
Sbjct: 411 IRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISCPG 470

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++ N              D+    + V    + 
Sbjct: 471 MPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKR 530

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 531 EKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRC 590

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++       
Sbjct: 591 GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLES 650

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             +              +P   V +  ++D    L++  F     G        + A  D
Sbjct: 651 DSQL------------AQPLVKVLSDAQQDVPAWLEEIAFSTYGPGFSGNARGNVFASVD 698

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVS 441
             K   G   ++ AG  + +   PV   S
Sbjct: 699 TRKNYPGKSSLNTAGFSSTQAPNPVDDES 727


>gi|291222373|ref|XP_002731189.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 670

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 178/382 (46%), Gaps = 8/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I   +    +   T++Q       L  +DV+  AQTGSGKT+A+ L     +  +
Sbjct: 126 SFPDYILATVKRNNFKEPTAIQAQGWPMALTGRDVVGIAQTGSGKTIAYMLPAIVHINHQ 185

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L + PTRELA QV          + +      GG     + RDL+ G 
Sbjct: 186 -PFLDRGDGPICLVLCPTRELAQQVAHVAVDFGKSSRIKNTCVYGGAPKGSQIRDLERGV 244

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 245 EICIATPGRLLDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMW 304

Query: 186 SATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA+++ KD ++VNI     S N     I          D+   ++  +  
Sbjct: 305 SATWPKEVRGLAEDFLKDYLQVNIGALSLSANHNILQIVDVCQEHEKDDKLIRLLEEIMQ 364

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+      T+ +    +  + + G+ SQ ER   L   R G A + +AT
Sbjct: 365 ENENKTLIFVETKKRTDDLTRRMRRDGWPAMCIHGDKSQPERDWVLSEFRAGNAPILLAT 424

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  S+ E+ +HR GRT R+ R G +         ++A  L  
Sbjct: 425 DVASRGLDVTDIKFVINFDYPSSTEDYIHRIGRTARSERTGTAYTFFTAGNMKQAPELID 484

Query: 360 -FREANVSVVWEPAPSVEAIRE 380
             REAN  +  +     EA R+
Sbjct: 485 VLREANQVINPKLINMAEAARK 506


>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
 gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     +  AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + L +   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    + V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|224088162|ref|XP_002308349.1| predicted protein [Populus trichocarpa]
 gi|222854325|gb|EEE91872.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 199/388 (51%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 51  VNTFAEIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPI 110

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++ E     P       PLAL ++PTREL+ Q+  E +    +TGV V V  GG  V
Sbjct: 111 IAGIMREQYVQRPHGGRTVYPLALILSPTRELSCQIHDEAKKFAYQTGVKVVVVYGGAPV 170

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----E 170
           +++ R+L+ G  ++V TPGRL D +    +++  ++ + LDEAD MLD+GF   I    E
Sbjct: 171 NQQLRELERGVDVLVATPGRLVDLVERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVE 230

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +      +R+ ++FSAT    I  LA ++  + + + +         I  R   V  +D
Sbjct: 231 QMDMPPCGRRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVHETD 290

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F   ++ G+ SQQER
Sbjct: 291 KRSHLMDLLHAQRETEVNGKHSLTLVFVETKKGADSLEHWLYVNKFPATSIHGDRSQQER 350

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 351 EMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGL 410

Query: 344 SVFVIPQN---MQRRAERLFREANVSVV 368
           +     +N   + R    L +EAN  V 
Sbjct: 411 ATAFFNENNLSLARPLADLMQEANQEVP 438


>gi|169794570|ref|YP_001712363.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260557002|ref|ZP_05829219.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
 gi|169147497|emb|CAM85358.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AYE]
 gi|260409608|gb|EEX02909.1| DEAD/DEAH box helicase [Acinetobacter baumannii ATCC 19606]
          Length = 619

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 158/599 (26%), Positives = 243/599 (40%), Gaps = 44/599 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 7   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 67  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 127 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 246

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 247 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 307 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 366

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 367 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 426

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 427 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 482

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P  +F      G D  RR    D+ 
Sbjct: 483 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDRPKRSF-----GGEDRPRREFNSDRP 529

Query: 531 IQLKYLG------------GEKPDFRGYKSSGFKSKNSQ----DGATKRFKRFKGASKN 573
            +                 G + D++  + +GF  +  +    +   +R   F    K 
Sbjct: 530 RREGGFNDKPRFDSNDDNRGNRVDYKPRRENGFGDRPQRSFGGEDRPRREGGFGDRPKR 588


>gi|117920819|ref|YP_870011.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613151|gb|ABK48605.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 491

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 184/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E GY   T +Q   +   L  K+VL +AQTG+GKT +F L L     A+ 
Sbjct: 8   LHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR-FADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     A+ + PTRELA+QV   +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FS
Sbjct: 126 LLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   DA+ + I+ ++   + ID     V    +   + ++++      
Sbjct: 186 ATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQEQNWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    ++ +HR GRTGRAG +G ++  + ++  R    + R     
Sbjct: 306 GIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHV 365

Query: 367 VVWEPAPSVE 376
           +V       E
Sbjct: 366 IVRREIAGFE 375


>gi|224285260|gb|ACN40356.1| unknown [Picea sitchensis]
          Length = 411

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 38  ETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L     V V  C+GG S+  + R
Sbjct: 98  QQLDYNVPE------CQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLR 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P  
Sbjct: 152 ILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSN 211

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +  + VR+ +  +      I      +     + + + ++
Sbjct: 212 LQVGVFSATMPPEALEITRKFMNNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 272 YETLAITQSVIFINTRRKVDMLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  I ++ +R  + 
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFITKDDERMLQD 391

Query: 359 LFREANVSVVWEP 371
           + R  NV V   P
Sbjct: 392 IQRFYNVVVEELP 404


>gi|224369411|ref|YP_002603575.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
 gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
          Length = 460

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 197/371 (53%), Gaps = 6/371 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     + +A+  +GY+  T +Q  ++   L  +D+L  AQTG+GKT AF L +  
Sbjct: 2   SFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P AL + PTRELA+QVG  ++    +  +   V  GGV+V+ +   
Sbjct: 62  IL---ARGKAHRRHPRALVLTPTRELALQVGESIKAYARRVSLRCTVVYGGVNVNPQIDR 118

Query: 121 LQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+ G  I+V TPGRL D     + + +S ++ +V DEAD MLDLGF D+I  IL+  P+ 
Sbjct: 119 LKRGVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRMLDLGFSDEISQILELVPQD 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR ++FSAT +  I  LA    K   ++ +         I  +  LV  S++   +++++
Sbjct: 179 RRTMLFSATYTRQIRDLADKMLKTPEQIEVTPNTTVAESIVQKVHLVEKSNKRELLIHLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+   ++  + LA+      AL G  SQ  R+  LQ  ++G  R+ +
Sbjct: 239 TRSDWRQVLVFTRTKHGANKLAERLAQVKISAAALHGNKSQSFRTRTLQEFKNGEIRILV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  V++ ++ S  E+ +HR GRTGRAG +G++V ++ +  +   + +
Sbjct: 299 ATDVAARGLDITGLPHVVNYDMPSVAEDYVHRIGRTGRAGIQGVAVSLVSKEEKVFLKSV 358

Query: 360 FREANVSVVWE 370
                  +  E
Sbjct: 359 ESLLEQKIPVE 369


>gi|255947238|ref|XP_002564386.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591403|emb|CAP97631.1| Pc22g03430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 602

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 219/485 (45%), Gaps = 20/485 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + +++ G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF L     L   
Sbjct: 125 NLSEKTMQGINDMGFTTMTEIQQRTVPPLLAGRDVLGAAKTGSGKTLAFLLPAIEML--H 182

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    L ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 183 ALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLMKGV 242

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++        +LK +V+DEAD +L++GF D+I  I+   P + R  M
Sbjct: 243 NLLVATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEIRQIVKILPSEERQTM 302

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+ + E+   + ++   V+     R   + + L+
Sbjct: 303 LFSATQTTKVEDLARISLRPGPLYINVDHSKEHSTVAGLEQGYVVCEADKRFLLLFSFLK 362

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+ + V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 363 RNLKKKIIVFFSSCSCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLIC 422

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R G+  KG S+  +  +     + 
Sbjct: 423 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR-GKEGKGRSLMFLQPSEVGFLKH 481

Query: 359 LFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI- 416
           L ++A V VV    P+ + +  +   ++++    +L+    D  +      A H    + 
Sbjct: 482 L-KDARVPVVEFEFPASKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRTVF 540

Query: 417 ---AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                  ++I +           + L S   R +   +  +   GS+        F    
Sbjct: 541 DVNKLDLVKIAKGFGFNAPPRIDIQLGSSLSRDKKQEQQGRRTYGSQPKHGAGLKFK--- 597

Query: 474 GSKQK 478
             K  
Sbjct: 598 -RKHN 601


>gi|205375157|ref|ZP_03227948.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 398

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 133/399 (33%), Positives = 206/399 (51%), Gaps = 20/399 (5%)

Query: 1   MKIFENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F  +   I    AL ++G    T +Q  ++   +  +DV+  A+TGSGKT+AF L +
Sbjct: 1   MQTFNQLGLHIKSERALEQQGITEPTPIQTEVIPLMVEGRDVIAQAKTGSGKTLAFILPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY---AKTGVVVAVCIGGVSVH 115
              +  E        A   L +APTRELA+QV  EL+ L         V+AV  G     
Sbjct: 61  LEKVDLEK------IAVQGLIVAPTRELAIQVTDELKKLVELEFPEVNVLAVYGGQDVEK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +      HIVV TPGRL DH+R   +++S L  ++LDEAD+ML +GF  ++E I+++
Sbjct: 115 QLHKLETRNIHIVVATPGRLLDHMRRGTIDLSELDMLILDEADQMLHIGFLPEVEQIIEA 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P  R+  +FSATIS  + TLAK YQ+    V +  + R   +I+   V      +  A+
Sbjct: 175 TPPTRQTALFSATISKDVRTLAKRYQQQPYTVQVKDKERLVEEIEQFVVETTDRKKLQAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +++       I+FC T   VS+    L    F V  L G+LSQ +R N ++  RD + 
Sbjct: 235 VEVIKETQPFMGIIFCRTIRRVSKLHMELKAKGFLVDELHGDLSQAKRENVMKRFRDAKI 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  GM++       ++ 
Sbjct: 295 QLLIATDVAARGLDVEGVTHVYNYDIPQDVESYIHRIGRTGRAGETGMAITFSALKDKQA 354

Query: 356 AERLFREANVSVVWE--------PAPSV-EAIRERDAQR 385
            + L      S+  +        P PS  +   E   QR
Sbjct: 355 LQSLEEGIKRSIPRKIVEVELESPTPSKGKDQNEERKQR 393


>gi|148232012|ref|NP_001083721.1| ATP-dependent RNA helicase ddx6 [Xenopus laevis]
 gi|1044938|emb|CAA63149.1| RNA helicase p54 [Xenopus laevis]
          Length = 481

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 179/374 (47%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT A+ + L   
Sbjct: 97  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLER 156

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 157 LDLKKDCI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 211 LDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNR 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++      + +    +N+  E             V    + + +  +  
Sbjct: 271 QILLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 329

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 330 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 390 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 449

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 450 EQLGTEI--KPIPS 461


>gi|167035034|ref|YP_001670265.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166861522|gb|ABY99929.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 453

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 181/372 (48%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 20  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLK 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     +L + PTRELA Q  ++++     T V   +  GG     +   L+    
Sbjct: 80  GG---RVEIRSLILLPTRELAQQTLKQVQLFSQFTYVKAGLVTGGEDFKEQAAMLRKVPD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH+K ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 137 VLIGTPGRLLEQLNAGNLDLSHVKVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++     +L     
Sbjct: 197 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIAQWLLANETF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 257 DKAIIFTNTRAMADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 317 ARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 377 QQFERRVIKEVK 388


>gi|77918185|ref|YP_356000.1| DNA/RNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77544268|gb|ABA87830.1| DNA/RNA helicase, ATP-dependent, DEAD-box family [Pelobacter
           carbinolicus DSM 2380]
          Length = 432

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 185/371 (49%), Gaps = 6/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + + +   GYV  T +Q   +   +  +DV+  AQTG+GKT AF L +   L+  
Sbjct: 7   NFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQRLID- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL +APTRELA Q+ + +  L   TG+      GGV++  +   L+ G 
Sbjct: 66  ----GPRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DHI  K +++S+++ +VLDEAD+M D+GF   +  IL   P +R+ L+F
Sbjct: 122 DIVVACPGRLIDHIGQKTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  L+       + V           + +    VA   +   ++ +L    ++
Sbjct: 182 SATMPAAIRRLSGEVLTSPMTV-QVGNTTPAETVSHALYPVAQHQKTAMLLELLSAVDSR 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  T+    R    L +  +Q  +L G LSQ  R  AL   RDG+  + +ATD+AA
Sbjct: 241 SVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++    E  +HR GRTGRA RKG +  ++          + +  + 
Sbjct: 301 RGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMVRAIEKVLDA 360

Query: 366 SVVWEPAPSVE 376
           S+        +
Sbjct: 361 SLERRTIEGFD 371


>gi|308810286|ref|XP_003082452.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
 gi|116060920|emb|CAL57398.1| putative nicotiana eukaryotic (ISS) [Ostreococcus tauri]
          Length = 404

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 194/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   I + +   L   G+   +++Q+  + P +  +DV+  AQ+G+GKT    LAL  
Sbjct: 32  TFDAMGIREDLLRGLYSYGFEKPSAIQQRAVVPIISGRDVIAQAQSGTGKTSMISLALCQ 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       + +     L ++PTRELAVQ  +    L     V V  CIGG S+  + R 
Sbjct: 92  MLD------TTSREVQGLVLSPTRELAVQTEKTALALGNFMNVQVHACIGGRSIGEDIRK 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L    +K +VLDEADEML+ GF++ I  +    P + 
Sbjct: 146 LDYGCHIVSGTPGRVFDMIKRRNLRTRGIKILVLDEADEMLNKGFKEQIYDVYRYLPPET 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 206 QVVLVSATLPNEVLEMTGKFMTDPLRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 265

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + ++ F V A+ G++ Q+ER   +   R G  RV I
Sbjct: 266 DTLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAMHGDMPQKEREEIMNEFRGGTTRVLI 325

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  + +   R    +
Sbjct: 326 TTDMWARGIDVQQVSLVINYDLPGNRENYIHRIGRSGRYGRKGVAINFVKEEDVRALRDI 385

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 386 EQYYSTQIDEMPMNVADMI 404


>gi|300024067|ref|YP_003756678.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525888|gb|ADJ24357.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 635

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 199/370 (53%), Gaps = 3/370 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE     + +  AL++ GYV  T +Q   L P L  +D+L  A+TGSGKT  F L L
Sbjct: 3   IENFEAFGFAEPLSRALTQCGYVTPTPIQVQALPPQLEGRDLLGMAETGSGKTATFVLPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + ++N   +P    LAL +APTRELA+Q+ +E+  L     +  AV +GGVS   + 
Sbjct: 63  LQKIASQNSEPAPKQ-VLALVLAPTRELAIQIDQEVASLARNMRIRRAVVLGGVSKGPQI 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H++V TPGRL D I  +  ++S ++ +VLDEAD M D+GF  DI+ I+   P+
Sbjct: 122 NALKRGVHVLVATPGRLLDLINMRTCDLSRVETLVLDEADRMFDMGFIRDIKKIVAMLPE 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR  +FSAT+   I   A +  K+  RV+++S++     ID + ++V  +++ + +  I
Sbjct: 182 ARRTALFSATMPVEIKKFAYDILKEPYRVDLSSKSVVVDRIDQKVMIVRTTEKQSRLHTI 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K  IVF  T+    R  + L        A  G  +Q  R  AL     G  RV 
Sbjct: 242 LADEACKRVIVFTRTKRGADRVAERLGMAGISASAFHGNKAQNARQRALNDFMMGHIRVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  V++ ++  +PE  +HR GRT R G  G+++ +     ++    
Sbjct: 302 VATDIAARGIDVSNITHVVNFDMPLDPETYVHRVGRTARKGNSGIAISLCDPGERQEITA 361

Query: 359 LFREANVSVV 368
           + R     + 
Sbjct: 362 IERMMKQKLE 371


>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
 gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           veroralis F0319]
          Length = 573

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 182/376 (48%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + +AL +  +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S 
Sbjct: 3   FEDLDLNDKVLDALYDMRFDKCTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D   P SA   + ++PTRELA Q+ + ++        V  V + G +        
Sbjct: 63  L---ADGGYPESAINCVIMSPTRELAQQIDQAMQGFAYYLNGVSCVAVYGGNDGNRYDQE 119

Query: 122 QNG----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                  A +V+ TPGR   H+    +++S +   +LDEAD MLD+GF +DI  I    P
Sbjct: 120 LKSLSLGADVVIATPGRFISHLSLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKKLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + +MFSAT+   I  LAK   K+ V +   + ++    I   A +   + +   + +
Sbjct: 180 NTCQTIMFSATMPKKIEELAKTLLKNPVEI-KLAVSKPAEKIHQMAYVCYETQKMGILKD 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +    K  I+F  ++  V R    L+        +  +L Q++R++ +   + G+  V
Sbjct: 239 VFKGGNMKRVIIFSGSKQKVKRIAGALSRKHINCGEMHSDLDQEQRNDIMFKFKSGQVDV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA   G ++ ++  +     +
Sbjct: 299 LVATDIVSRGIDIDDITMVINYDVPHDVEDYVHRIGRTARADHDGTAITLVNADDIYFFQ 358

Query: 358 RLFREANVSVVWEPAP 373
           ++       +     P
Sbjct: 359 QIESFLGKEIEKVQLP 374


>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
 gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
          Length = 462

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 8/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI     ++L   GY  +T VQE  +   L+ +D++V A+TGSGKT  FG+ L + +   
Sbjct: 10  NISPAQLKSLEALGYKAMTPVQEQSIPLILKGRDLVVRAKTGSGKTATFGIGLLNKI--- 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNG 124
           N RF       AL + PTRELA QVG E+  L ++   +  V + G      +RD  Q+G
Sbjct: 67  NPRF---FGAQALVLCPTRELADQVGAEIRRLASQMPNIKVVMLCGGKPFGAQRDSLQHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH+VVGTPGR+ DH+    L I  +  +VLDEAD MLD+GF D ++ I+   PK R+ L+
Sbjct: 124 AHVVVGTPGRIHDHLTKGTLQIDQVSTLVLDEADRMLDMGFADTMQAIIAEVPKNRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    I  ++++ Q +  +         +   I+     +   +R   ++ +  ++ 
Sbjct: 184 FSATYPDNIQKISRSIQANPAMVQVDDDVAHEEGVIEQLFFEIKKHERYPTLLALFEHYR 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            KNA VFC+T+   +     L EH  +  AL G++ Q+ER   L    +G   V +ATDV
Sbjct: 244 PKNAAVFCNTKKQCAEVADFLNEHDIEAKALHGDMDQRERDQVLLQFANGSCPVLVATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L +V++ EL  +PE  +HR GRTGRAG  G++  ++ ++   R  ++ +  
Sbjct: 304 AARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLRQIEQYQ 363

Query: 364 NVSVVWEPAPSVE 376
           +     +   S++
Sbjct: 364 DQPCACDVLASLD 376



 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               + +            G KQK     ++  L   +G+   +IG I +    ++V VS
Sbjct: 376 DRDPNYELKGEWVTIQFDSGRKQKMRPGDILGALTGDAGLPGSAIGKITIADYSSYVAVS 435

Query: 515 AD----GVDLLRRTVKLDKGIQLKYL 536
            D     ++ + +     + ++ + L
Sbjct: 436 RDVLRQAMNYVSQGKIKGRNVRARRL 461


>gi|325188274|emb|CCA22814.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 414

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +++
Sbjct: 40  IDTFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL +APTRELA Q+ + +  +     + V  C+GG +V  + 
Sbjct: 100 LQKININ------LKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G HIVVGTPGR+ D I    L    +K  VLDEADEML  GF+D I  +    P+
Sbjct: 154 HTLQQGVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPE 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   +  + + + +D +R+ +  +      I    V +     + + + +
Sbjct: 214 SVQVALFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV
Sbjct: 274 LYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LV++ +L  N EN +HR GR+GR GRKG+++  + +   R  +
Sbjct: 334 LITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLK 393

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  N  +   P    + I
Sbjct: 394 DIEKFYNTQIEEMPMNVADLI 414


>gi|318056099|gb|ADV36250.1| Vasa [Gadus morhua]
          Length = 644

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 107/360 (29%), Positives = 180/360 (50%), Gaps = 8/360 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+ 
Sbjct: 215 LCESLERNVAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADG 274

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                FS    P A+ +APTREL  Q+  E       T V   V  GG+S   + RDL  
Sbjct: 275 VAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLR 334

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----ILDSSPK 178
           G +++ GTPGRL D I    + ++ L+ +V+DEAD MLD+GF  ++        + S  +
Sbjct: 335 GCNVLCGTPGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEE 394

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++  +              +KD + + +       SD++ + V V    + + +++I
Sbjct: 395 RQTLMFSATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDI 454

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G +  +VF  T+         L        ++ G+  Q+ER  AL   R G+  V 
Sbjct: 455 LKNTGTERTMVFVETKRQADFIAAFLCRENVATTSIHGDREQREREQALGDFRSGKCPVL 514

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT VAARG+D+ D++ V++ +L +N ++ +HR GRTGR G  G +V         +  R
Sbjct: 515 VATSVAARGLDIKDVQHVVNFDLPNNIDDYVHRIGRTGRCGNTGQAVSFYDPEQDNQLAR 574


>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
 gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
          Length = 401

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  I + +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F ++   
Sbjct: 29  TFDSMGIREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISTLQ 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +      AL + PTRELA QV + +  L     V   VCIGG +V  + R 
Sbjct: 89  VLD------TSVRETQALILCPTRELAQQVQKVILALGDYMNVQAHVCIGGTNVGEDIRK 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+VVGTPGR  D IR + L   ++K ++LDEADEML+ GF++ I  +    P   
Sbjct: 143 LDFGQHVVVGTPGRTFDMIRRRNLRTRNIKLLILDEADEMLNRGFKEQIYDVYRYLPPAT 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 203 QVCLVSATLPHEILEMTHKFMSDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FCST+  V    + + E  F V A+ G++ Q+ER+  ++  R G+ RV I
Sbjct: 263 DTLTITQAVIFCSTKRKVDWLAEKMREANFTVSAMHGDMPQKERNEIMREFRSGQTRVLI 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 323 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVRNDDIRILRDI 382

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 383 EQYYSTQIDEMPMNVADLI 401


>gi|242096928|ref|XP_002438954.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
 gi|241917177|gb|EER90321.1| hypothetical protein SORBIDRAFT_10g028940 [Sorghum bicolor]
          Length = 414

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 393

Query: 358 RLFREANVSVVWEPA 372
            + +  NV +   PA
Sbjct: 394 DIQKFYNVVIEELPA 408


>gi|198423899|ref|XP_002126471.1| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl... [Ciona
           intestinalis]
          Length = 409

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 195/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  +    + +DV+  AQ+G+GKT  F +++  
Sbjct: 37  TFDSMGLREDLLRGIYAYGFEKPSAIQQRAIKQITKGRDVIAQAQSGTGKTATFSISVLQ 96

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +           AL ++PTRELA Q+ + +  L     V    CIGG +V  + R 
Sbjct: 97  MIDTQ------LRDTQALVLSPTRELAQQIQKVILALGDYMSVQCHACIGGTNVGEDIRK 150

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K ++LDE+DEML+ GF++ I  +    P   
Sbjct: 151 LDYGQHVVSGTPGRVFDMIRRRSLRTRSIKMLILDESDEMLNKGFKEQIYDVYRYLPPAI 210

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 211 QVVLLSATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVDKEEWKFDTLCDLY 270

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + +  F V+ + G++ Q+ER+  ++  R G +RV I
Sbjct: 271 DTLTITQAVIFCNTKRKVDWLTEKMRDANFTVLCMHGDMPQKERTEIMKQFRSGESRVLI 330

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+S+  +  +  R    +
Sbjct: 331 CTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVSINFVKNDDIRILRDI 390

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 391 EQYYSTQIDEMPM 403


>gi|237748776|ref|ZP_04579256.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
 gi|229380138|gb|EEO30229.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
          Length = 465

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 201/392 (51%), Gaps = 27/392 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +  +I +AL++  Y   T VQE  +   +  KD+LVS+QTGSGKT AF L    
Sbjct: 2   TFEALGLHPLIQKALADIHYDKPTPVQEKAIPAGIEGKDLLVSSQTGSGKTAAFMLPALH 61

Query: 61  TL----------------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98
                                     E  R+ PA  P  L + PTRELA+Q+ +  E   
Sbjct: 62  RFASVPFEKSDKKTFNQKRQAARAKGEKVRYEPA-HPKMLVLTPTRELAMQIVQSSEDYS 120

Query: 99  AKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
           A          +GG+   ++ + L     I+V TPGRL DH+    +    L+ +VLDEA
Sbjct: 121 AYLKHFRTVAILGGMPYPKQMQLLAKNPEILVATPGRLIDHMHSGKIRFDQLEILVLDEA 180

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF DDIE I+ ++P+ R+ ++FSAT+   +  +A+   +D   ++I S   +H 
Sbjct: 181 DRMLDMGFIDDIETIIAATPETRQTMLFSATLDGIVGNMARKITRDPELIHIHSVASRHE 240

Query: 218 DIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +ID     V     ++  + ++L       A+VF +T+         LA   F   AL G
Sbjct: 241 NIDQMIHFVDDLPHKNRLLDHLLHDRSLDQALVFTATKRDADIVADRLAIAGFSAAALHG 300

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           ++ Q  R+  L  +R G+ ++ +ATDVAARGID+P++  V++ +L   PE+ +HR GRTG
Sbjct: 301 DMPQGARNRTLTKLRRGQVKILVATDVAARGIDIPNITHVVNYDLPKFPEDYVHRIGRTG 360

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           RAGR G+++ ++  N      ++ R    S+ 
Sbjct: 361 RAGRHGLAISLVNHNDNNNVRKIERFTKQSIP 392


>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
 gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
          Length = 407

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L   T + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   +   ++  S  R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADDAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   R+G   V
Sbjct: 240 HIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAISRFREGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|328873234|gb|EGG21601.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 418

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 193/380 (50%), Gaps = 9/380 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+I   + +   +   G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +    
Sbjct: 45  TFESIHLREDLLRGIYGFGFEKPSAIQQRAIVPIIKGRDTIAQAQSGTGKTATFSIGALQ 104

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++            P  + ++PTRELA Q+ + +  L     V V   +G  ++  + R 
Sbjct: 105 SVDVSIKN------PQVIILSPTRELAQQIQKVVMALGGFMSVQVHSFVGQKTISEDVRR 158

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HI  GTPGR+ D I  K LN   +K ++LDEADEML LGF+  I  +    P   
Sbjct: 159 LEQGVHIASGTPGRVIDLISRKALNTRQIKMLILDEADEMLSLGFQQQINDVYRYLPPAT 218

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           ++++ SAT++  + ++ + +  D VR+ +  +      I      +     +   + +I 
Sbjct: 219 QIVLVSATLTQDVVSMTERFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIY 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T++ V   T  + E  F V +L G++ Q+ER   ++  R G  RV I
Sbjct: 279 DSLTITQAVIFCNTKSKVDALTNKMREANFTVASLHGDMDQKEREEIIRSFRSGENRVLI 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 339 TTDILARGIDVQQVSLVINYDLPMDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRDI 398

Query: 360 FREANVSVVWEPAPSVEAIR 379
            +  +  +   P    ++I 
Sbjct: 399 EQFYSTQIDEMPMNFADSIN 418


>gi|242022822|ref|XP_002431837.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517169|gb|EEB19099.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 630

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 121/408 (29%), Positives = 197/408 (48%), Gaps = 15/408 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P+++ E + ++G+   + +Q       L  KD++  AQTG+GKT+AF L     + 
Sbjct: 228 FQHYPEILDE-IEKQGFKVPSPIQSQAWPILLSGKDLIGIAQTGTGKTLAFLLPALIHID 286

Query: 64  AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +      P   P  L IAPTRELA+Q+  E++  Y+   +      GG +   +   +Q
Sbjct: 287 GQKIPGTKPRGGPNVLIIAPTRELALQIENEVKK-YSYKNIKCLCVYGGGNRREQINTVQ 345

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++ TPGRL D +    + +S +  +VLDEAD MLD+GF   I  +L      R+ 
Sbjct: 346 EGVEIIIATPGRLNDLVNNSYITLSSITYIVLDEADRMLDMGFEPQIRKLLLDIRPDRQS 405

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDR--DNAIVNIL 239
           +M SAT    +  LAK Y  + ++V I S +      +  R  ++   D+      +   
Sbjct: 406 VMTSATWPNDVQRLAKRYMSNPIQVFIGSLDLTAVHSVLQRVYIINEGDKKSYLFDILRN 465

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   +      +  L+ + F    + G   Q +R  AL   + G  ++ I
Sbjct: 466 LKEEEDKIIVFVGKKNMADDLSCDLSLNRFMCQCIHGGREQMDREQALDDFKTGCVKILI 525

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358
           ATDVA+RGID+ D+  V++ +  +N E  +HR GRTGRAG+ G ++    ++    A   
Sbjct: 526 ATDVASRGIDISDITKVLNYDFPNNIEEYVHRVGRTGRAGKTGEAITFFTRSNWMHAGDL 585

Query: 359 --LFREANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKK 402
             +  EAN SV  E    +  +RER    Q +  D  FL+  + +  K
Sbjct: 586 ISIMEEANQSVPIE----LYEMRERYLKRQEMKCDDKFLEKKKTNRWK 629


>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 678

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/359 (31%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I   + ++G+   T +Q       L  KD++  A+TGSGKT+A+ L     +  +
Sbjct: 133 NFPDYIMNVIRKQGFTVPTPIQAQGWPIALSGKDIVGIAKTGSGKTIAYMLPAIVHIHNQ 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+          T +  +   GG     + RDL++G 
Sbjct: 193 PP-LELNDGPIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDLESGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 252 EIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQVLMW 311

Query: 186 SATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT    +  LA++Y  D +++N      S N     I          ++   +++ +  
Sbjct: 312 SATWPKEVRALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKENKLRQLLHEIGS 371

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V   T++L +  +  +++ G+ +QQER + L   R+GRA + +AT
Sbjct: 372 EKENKTIIFVETKRKVDNITQILRKDGWPALSIHGDKNQQERDHVLTQFRNGRASILVAT 431

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+ D++ VI  +  S+ E+ +HR GRTGR+ + G +      +  + A  L 
Sbjct: 432 DVAARGLDVEDVKFVIIFDYPSSLEDYIHRIGRTGRSEQTGTAYAFFTPHNVKHANALI 490


>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
 gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
 gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
          Length = 625

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 168/376 (44%), Gaps = 8/376 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++ + + + GYV  T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 210 IKNFESARLRGIVLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPI 269

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L E+        P A+ ++PTRELA+Q+  E       T + +++  GG S   + 
Sbjct: 270 LNNILDESHDLEIGK-PQAVIVSPTRELAIQIFNEARKFSYTTYLKISIVYGGTSFKYQN 328

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G H+++ TPGRL D +    +     + +VLDEAD MLD+GF D +  I+     
Sbjct: 329 ECITKGCHVLIATPGRLLDFVDRTFITFDDTRFIVLDEADRMLDMGFSDSMRKIMHHQTM 388

Query: 179 KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +        + +          +                     + V         + + 
Sbjct: 389 RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVTIGVVGGACSDVQQTVYEVNKFNKRSKLM 448

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +   GA   IVF  T+          +E  F   ++ G+  Q +R  AL+  + G  +V
Sbjct: 449 EILREGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALRDFKTGTMKV 508

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--- 354
            IAT VA+RG+D+ +++ VI+ ++ +N ++ +HR GRTGR G  G +         R   
Sbjct: 509 LIATSVASRGLDIKNVKHVINYDMPTNIDDYVHRIGRTGRVGNSGRATSFFDPEQDRTLA 568

Query: 355 -RAERLFREANVSVVW 369
               ++   +   V  
Sbjct: 569 ADLIKILEGSGQEVPE 584


>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
           [Saccoglossus kowalevskii]
          Length = 446

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 211/418 (50%), Gaps = 13/418 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ E   +  +   T +Q   +   L  KDV+  A+TGSGKT AF L +  
Sbjct: 24  TFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGKTGAFALPILQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R        AL + PTRELA Q+  + E L +  G+  AV +GG+ +  +   
Sbjct: 84  DLLEHPQR------LFALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDMMSQALQ 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VV TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++
Sbjct: 138 LAKKPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKILKVIPRE 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  ++SAT++  +  L +   K+ V+V + ++ +    +    + +    +D  +V IL
Sbjct: 198 RRTYLYSATMTKKVAKLQRASLKNPVKVEVNTKYQTVEKLLQYYLFIPSKYKDVYLVYIL 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VFCST  +  R   +L       V L G++SQ +R   L   +     + I
Sbjct: 258 NELAGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNKFKGKDRSILI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAG+ G ++  + Q      +R+
Sbjct: 318 ATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVTQYDVELYQRI 377

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEK 415
            +  +  +     PS E       +R+ +   +  ++    D+KK         D E+
Sbjct: 378 EQLISKQLPLY--PSEEEDVMMLVERVTEAQRYARMEMTDNDDKKRKGRRGDFDDSEE 433


>gi|325115741|emb|CBZ51296.1| hypothetical protein NCLIV_043620 [Neospora caninum Liverpool]
          Length = 673

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 198/395 (50%), Gaps = 19/395 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++   PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +
Sbjct: 223 FRNFKDMRFPQPILKGLQERGISFPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPM 282

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L    R +  P   P  L + P+RELA Q      +            +     IG
Sbjct: 283 IMGALESETRAAYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEEGGYPALRCLCVIG 342

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G SV  + R+++ G H +V TPGRL D +  + L++   + +  DEAD M+D+GF +++ 
Sbjct: 343 GCSVVEQAREVRQGVHCIVATPGRLTDMLNKRRLSLQQCEYLCFDEADRMVDMGFEEEVR 402

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +LDS   +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   +
Sbjct: 403 NVLDSFGHQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQEN 462

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +++ L+       ++FC  +  V    + L        A+ G L+Q+ERS+A++  
Sbjct: 463 KLPYLLHCLQKTAPP-VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSDAVRAF 521

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+GR  V + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +
Sbjct: 522 REGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNK 581

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRER 381
           N +       + L  EA   +     P +EA+  R
Sbjct: 582 NQEETVLLDLKALLIEAGQRIP----PFLEALDSR 612


>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
 gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
           JCVIHMP010]
          Length = 589

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 200/457 (43%), Gaps = 11/457 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL +  +   T VQE  +   L+ KD+L  AQTG+GKT A+ L + S L   
Sbjct: 7   DLNDNVLDALYDMHFDECTPVQEQCIPHILKGKDILAVAQTGTGKTAAYLLPILSKL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG- 124
            D   P  A   L ++PTRELA Q+ + ++        V  V + G +            
Sbjct: 64  ADGGYPEDAINCLIMSPTRELAQQIDQGMQGFSYYLNGVSCVAVYGGNDGNRYDQEIKSL 123

Query: 125 ---AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              A +++ TPGR   HI    +++S +   VLDEAD MLD+GF +DI+ I    P   +
Sbjct: 124 ALGADVIIATPGRFISHISLGNVDLSKVSFFVLDEADRMLDMGFSEDIKTIAKKLPSTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LAK        +   + ++    I   A +   + +   I +I + 
Sbjct: 184 TIMFSATMPSKIEDLAKTL-LKEPEMVKLAVSKPAEKIQQSAYVCYETQKIEIIKDIFKA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  ++  V +    L         +  +L Q +R + +   + G+  V +AT
Sbjct: 243 GDLHRVIIFSGSKQKVKQIASSLNRKHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++  +  +     +++  
Sbjct: 303 DIVARGIDIDDITMVINYDVPHDVEDYVHRIGRTARADRDGVAITFVNGDDIYYFQQIES 362

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               ++     P  EA+ E    +    P      +   +   D    K           
Sbjct: 363 FLEKTIEKNRLP--EALGEGPEYKSNGRPSKNKKAKNRRRHDRDQQSHKDKKSNYRRVKN 420

Query: 422 RIHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           R  + A     E+  P +     ++ +D     +VG 
Sbjct: 421 RQEQPAPTDEKEQHKPQTSEKKSEKVQDKGNIPEVGA 457


>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 521

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 8/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +     +A+ + GY   T +Q   +   L  +DVL  AQTG+GKT AF L L
Sbjct: 1   MTEFSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   +   + A  P AL +APTRELA QV    E     T +   + IGGVS+  + 
Sbjct: 61  IERL---SKGRARARMPRALVLAPTRELADQVAMSFEKYAKGTKLSWVLLIGGVSMGDQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I   +P 
Sbjct: 118 AALNKGVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRMLDMGFIPDIERIFKLTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAI 235
           KR+ L FSAT+ P IT L + + KD  R+  +        I    V +       +  A+
Sbjct: 178 KRQTLFFSATMPPEITRLTQAFLKDPTRIEASRPAMTAETITQYLVRIPSSDPKAKRAAL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++     +N IVFC+ ++ V    K L +H F    + G+L Q  R+  L   R G  
Sbjct: 238 RELMARADVRNGIVFCNRKSEVDVVAKSLKQHGFDAAPIHGDLDQSLRTKTLADFRSGAL 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +A+DVAARG+D+PD+  V + ++S + ++ +HR GRTGRAG+ G +  ++     + 
Sbjct: 298 KILVASDVAARGLDIPDVSHVFNYDVSHHADDYVHRIGRTGRAGKLGQAFMIVTPADDKS 357

Query: 356 AERLFREANVSVVW 369
            +++ +   +S   
Sbjct: 358 LDKVMKLIKMSPEE 371


>gi|303277715|ref|XP_003058151.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460808|gb|EEH58102.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 413

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L  E
Sbjct: 46  NLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVLQQLDYE 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL +APTRELA Q+ + +  L     V    C+GG SV  ++R LQ+G 
Sbjct: 106 KEE------CQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQRILQSGV 159

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L   H+K   LDEADEML  GF+D I  I    P K ++ +F
Sbjct: 160 HVVVGTPGRVYDMLRRRALKPDHIKIFSLDEADEMLSRGFKDQIYDIFQLLPSKLQVGVF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I      +     + + + ++      
Sbjct: 220 SATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETLAI 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 280 TQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + + R   
Sbjct: 340 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQDVQRFYQ 399

Query: 365 VSVVWEPAPS 374
              V+E  PS
Sbjct: 400 T--VFEELPS 407


>gi|320583801|gb|EFW98014.1| eukaryotic translation initiation factor eIF-4A subunit, putative
           [Pichia angusta DL-1]
          Length = 396

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 194/372 (52%), Gaps = 9/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + + + +   G+   +++Q   +   ++ +DV+  AQ+G+GKT  F + +  
Sbjct: 24  SFEEMSLKESLLKGIYAYGFEAPSAIQSRAIAQVIQGRDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++ TRELA Q+   +  L     +    C+GG SV  + R 
Sbjct: 84  VVD------TSKFETQALVLSTTRELAAQIRSVISALGDYMKIRCHACVGGKSVGEDIRA 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L+I ++K +VLDEADE+L  GF+D I  I    P   
Sbjct: 138 LSKGQHIVSGTPGRVLDMIKRRTLSIRNVKMLVLDEADELLGKGFQDQISEIYQYLPPST 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++++ SAT+  A+ +L   +  D V++ +  +      I+     +     + + + ++ 
Sbjct: 198 QVVVVSATLPKAVLSLTNKFMSDPVKILVKRDELTLEGINQYYIQVEKEDWKFDTLCDLY 257

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   ++ L +  F V ++ G++ Q ER   +   R G +RV I
Sbjct: 258 DSLTITQAVIFCNTKKKVDWLSESLRKANFTVSSMHGDMQQDERDRVMDEFRLGNSRVLI 317

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TD+ ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG+++  + +N       +
Sbjct: 318 STDIWARGIDVQQVSLVINYDLPYDKENYVHRIGRSGRFGRKGVAINFVTRNELGDLTEI 377

Query: 360 FREANVSVVWEP 371
               ++ +   P
Sbjct: 378 EEFFSIKIDEMP 389


>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 467

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 183/374 (48%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L   + A+ 
Sbjct: 8   LSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQ-MFADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     A+ + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRAIILTPTRELAVQVEENIRQYAKYLPLTSMAMYGGVDAAPQKKKLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLDMGFIEDINKIIEKLPPQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ + + IA        ID     V    +   + ++++      
Sbjct: 186 ATLSKQVRVLAKTAVENPIEIEIARNAATAPQIDQWLTTVDKDKKSALLSHLIKEQAWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRDIGAEAFHSGRSQAVREQLLADFKSGKLAFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  +    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGEHGEAISFVSKDDFKNLCAIERRLGHL 365

Query: 367 VVWEPAPSVEAIRE 380
           +V +        +E
Sbjct: 366 IVRKEVEGFAPKKE 379


>gi|222149464|ref|YP_002550421.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
 gi|221736447|gb|ACM37410.1| ATP-dependent RNA helicase [Agrobacterium vitis S4]
          Length = 484

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 190/362 (52%), Gaps = 2/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L++ G+   T +Q   +   +  +D++  AQTG+GKT AFGL +   LL ++
Sbjct: 25  LSPTVVATLTQLGFETPTPIQAQGIPVVMAGRDLIGLAQTGTGKTAAFGLPIIE-LLMKD 83

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R         L +APTREL  Q+G  L     KT + +   +GG S+++++  L+ G  
Sbjct: 84  ERRPDNRTTRTLILAPTRELVNQIGDNLRSFIRKTPIKINQVVGGASINKQQLQLERGTD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I    +++  +  +VLDEAD+MLDLGF  D+  I    P KR+ L+FS
Sbjct: 144 ILVATPGRLLDLISRNAISLRAVTHLVLDEADQMLDLGFIHDLRKIAKMVPAKRQTLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNILRYHGAK 245
           AT+  AI  LA ++  + V V ++   +    ++     V   + +   +   L  H   
Sbjct: 204 ATMPKAIADLAGSFLNNPVTVEVSPPGKAADKVEQYVHFVNGQNHKTELLKKTLADHPDG 263

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +IVF  T+    +  K L    F V ++ G  SQ +R  AL+  RDG  R  IATDVAA
Sbjct: 264 RSIVFLRTKHGAEKLMKHLEITGFSVASIHGNKSQGQRERALKGFRDGSIRTLIATDVAA 323

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  R    + R   +
Sbjct: 324 RGIDIPAVSHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCGPDEARLLRDIERLMGI 383

Query: 366 SV 367
            +
Sbjct: 384 EI 385


>gi|156096943|ref|XP_001614505.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148803379|gb|EDL44778.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 433

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L   
Sbjct: 62  FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                +          L + PTRELA+Q    ++ L     +   V  GG S+  +   L
Sbjct: 122 CNTHKNFI------QGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRL 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+ GTPGR+ D       N+S    +V+DEAD++L   F+  +E ++   PK+++
Sbjct: 176 YNVVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LM+SAT    +    + Y  DA  +N+  E             V    + + +  +   
Sbjct: 236 ILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGI-TQYYAFVKERQKVHCLNTLFAK 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  +    +   +SQ  R+      R+G  R  +++
Sbjct: 295 LQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSS 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++  
Sbjct: 355 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIEL 414

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 415 ELGTEIQPIP 424


>gi|114794619|pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794620|pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794621|pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
 gi|114794622|pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
          Length = 391

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 200/381 (52%), Gaps = 9/381 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 17  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 76

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 77  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 131 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 190

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 191 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 251 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 311 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 370

Query: 360 FREANVSVVWEPAPSVEAIRE 380
            +  +  +   P    + I E
Sbjct: 371 EQYYSTQIDEMPMNVADLILE 391


>gi|73748116|ref|YP_307355.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|147668820|ref|YP_001213638.1| DEAD/DEAH box helicase domain-containing protein [Dehalococcoides
           sp. BAV1]
 gi|289432193|ref|YP_003462066.1| DEAD/DEAH box helicase [Dehalococcoides sp. GT]
 gi|73659832|emb|CAI82439.1| ATP-dependent RNA helicase, DEAD [Dehalococcoides sp. CBDB1]
 gi|146269768|gb|ABQ16760.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. BAV1]
 gi|288945913|gb|ADC73610.1| DEAD/DEAH box helicase domain protein [Dehalococcoides sp. GT]
          Length = 561

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 182/369 (49%), Gaps = 8/369 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N    +   +   GY   T +Q   + P +   DV+  AQTG+GKT A+ L +  
Sbjct: 2   SFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L+     +P      L IAPTRELA Q+      L  +  +      GGV++ ++ R 
Sbjct: 62  KMLS-----TPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VV  PGRL DHI    +++  ++ +++DEAD M D+GF+ DI+ IL    +  
Sbjct: 117 LRSGVDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPH 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P +  L    Q + V V + +++   S        V    +   ++ IL+
Sbjct: 177 QTLLFSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSH-SVYPVKSHQKTPLLLEILK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ ++F  T+         +++  F   +L G LSQ  R   ++  R G  ++ +A
Sbjct: 236 TVETKSVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+ ++  +PE+  HR GRTGR  R G +  ++          + 
Sbjct: 296 TDIAARGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQ 355

Query: 361 REANVSVVW 369
           R  +  +  
Sbjct: 356 RLLSSPIQR 364


>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
 gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
           cinerea okayama7#130]
          Length = 1081

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/454 (25%), Positives = 207/454 (45%), Gaps = 16/454 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    E +    Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L L   +  + 
Sbjct: 428 LPASCIEVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRHIKDQR 487

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQ+ ++ +      G+      GG  +  +  +L+ GA 
Sbjct: 488 P-LEQMEGPMALVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAELKKGAE 546

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ +
Sbjct: 547 IIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQTV 606

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NIL 239
           +FSAT    + +LA+   +  + + +   +   ++I+    + A   + N ++     + 
Sbjct: 607 LFSATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRAEDTKFNRLLEILGQMY 666

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F   + +     + L    +  ++L G   Q +R + +   + G   + I
Sbjct: 667 NDDPECRTLIFVDRQEAADNLLRDLMRKGYLCMSLHGGKDQVDRDSTIADFKAGVVPIVI 726

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R +  +
Sbjct: 727 ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQERYSVDI 786

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           +R    S    P   +E +     +++        +  G   K +D L  + D  +    
Sbjct: 787 YRALKASEATIP-KELEDLANGFLEKVKAGKA-QAAGSGFGGKGLDRLDKERDARE---- 840

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
             R  R      E+  P +        + D   F
Sbjct: 841 --RAERKAYGEGEDEKPATTTEETTTKQADDMTF 872


>gi|194759163|ref|XP_001961819.1| GF14739 [Drosophila ananassae]
 gi|190615516|gb|EDV31040.1| GF14739 [Drosophila ananassae]
          Length = 525

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/395 (29%), Positives = 208/395 (52%), Gaps = 9/395 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  E  +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL   
Sbjct: 78  LNDTLCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENP 137

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL + PTRELA Q+G + E L +  G+   V +GG+ +  +   L    H
Sbjct: 138 QRF------FALVLTPTRELAFQIGEQFEALGSSIGIKCCVVVGGMDMVAQGLQLAKKPH 191

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH+      N+  +K +V+DEAD +L++ F  +++ IL   P++RR  +F
Sbjct: 192 IIIATPGRLVDHLENMKGFNLKSIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 251

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   KD V+V ++++ +    +    + + +  +D  +V+IL      
Sbjct: 252 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQYYLFIPVKYKDVYLVHILNELAGN 311

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FCST  +  +   +L       + L G++SQ +R  AL   +     + I+TDVA+
Sbjct: 312 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKDRSILISTDVAS 371

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+      
Sbjct: 372 RGLDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGK 431

Query: 366 SVVWE--PAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +         V A++ER A+      L L  ++ 
Sbjct: 432 QLPLYKCEEDEVMALQERVAEAQRTAKLELKDLED 466


>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
 gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
          Length = 407

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++ Q + EA+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L  
Sbjct: 2   IRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  +   L  KT + +    GGV      
Sbjct: 62  LQYL-QDFPRRKPGPA-RILILTPTRELAMQVADQARALAKKTKLNIFTITGGVQYQEHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    
Sbjct: 120 DILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +   +   ++  S  R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  ++     L         + GE+ Q  R+NA+   RDG   V
Sbjct: 240 HIITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVARYVKEDIKE 371


>gi|145345795|ref|XP_001417385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577612|gb|ABO95678.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 480

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 186/374 (49%), Gaps = 11/374 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++   +   +    + N T VQ+  +   L  +D++  AQTGSGKT AF   + + +L  
Sbjct: 56  DLGAAVNTNIKRCKFKNPTPVQKYAIPASLAGRDLMACAQTGSGKTAAFCFPIIAGILKR 115

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +    +  + PLAL ++PTRELA Q+  E      +TGV   V  GG     + R ++
Sbjct: 116 GLQGGHMNRKTYPLALVLSPTRELASQIHEESRKFAYQTGVASCVIYGGAPAVEQFRAME 175

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILDSSPK 178
            G  I+V TPGRL D I    +++S ++ + LDEAD MLD+GF   I             
Sbjct: 176 RGCDILVATPGRLIDLIDRAKISLSRVQYLALDEADRMLDMGFEPQIRQIVDERDMPRCG 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT    I  +A ++  D V + +      H+ I      V      + ++  
Sbjct: 236 ERQTMLFSATFPREIQRMASDFLDDYVFLTVGRVGSSHALITQSVERVTSYHEKSNMLLD 295

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        +VF  T+    +    L ++     ++ G+ +QQER  AL+  R G+  + 
Sbjct: 296 LVEAVPGLTLVFVETKRGADQLEDFLYQNGKPATSIHGDRTQQEREAALKSFRAGKTPIL 355

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQR 354
           +ATDVAARG+D+P +  VI+ +L S+ ++  HR GRTGRAG+KG +  +  ++    M R
Sbjct: 356 VATDVAARGLDIPHVTHVINFDLPSDIDDYTHRIGRTGRAGKKGRATALFLESKDGQMAR 415

Query: 355 RAERLFREANVSVV 368
               L  EAN  V 
Sbjct: 416 PLTELMSEANQEVP 429


>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
           [Macaca mulatta]
          Length = 455

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 123/423 (29%), Positives = 215/423 (50%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++    V+ EA  + G+   T +    +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 24  KTFKDLGVTDVLCEACDQLGWTKPTKILIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+    +  
Sbjct: 84  NALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 138 ALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V I
Sbjct: 198 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYI 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 258 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 318 LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQR 377

Query: 359 LFREANVSVVWEPAPSVE----AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +       +   P    E    A R  +AQR  +  L      G++KK        +D  
Sbjct: 378 IEHLIGKKLPVFPTQDDEVMMLAERVAEAQRFARMELREH---GEKKKRSREDAGDNDDT 434

Query: 415 KIA 417
           + A
Sbjct: 435 EGA 437


>gi|126643119|ref|YP_001086103.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213158859|ref|YP_002320857.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|126389003|gb|ABO13501.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii ATCC
           17978]
 gi|213058019|gb|ACJ42921.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 615

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 158/599 (26%), Positives = 243/599 (40%), Gaps = 44/599 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 423 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 478

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P  +F      G D  RR    D+ 
Sbjct: 479 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDRPKRSF-----GGEDRPRREFNSDRP 525

Query: 531 IQLKYLG------------GEKPDFRGYKSSGFKSKNSQ----DGATKRFKRFKGASKN 573
            +                 G + D++  + +GF  +  +    +   +R   F    K 
Sbjct: 526 RREGGFNDKPRFDSNDDNRGNRVDYKPRRENGFGDRPQRSFGGEDRPRREGGFGDRPKR 584


>gi|127511701|ref|YP_001092898.1| ATP-dependent RNA helicase SrmB [Shewanella loihica PV-4]
 gi|126636996|gb|ABO22639.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 419

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 180/376 (47%), Gaps = 6/376 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      + E+L   G++  T++Q+  +   L  KD+L  A TG+GKT +F L     
Sbjct: 16  FEDFHLDDTLLESLKAMGHLAPTTIQQQTIPLALEHKDILARAPTGTGKTASFLLPALQH 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R+S  +    L +APTRELA QV R    L    G+ +A+  GGV    + + L
Sbjct: 76  LLDFPRRYSGQA--RVLILAPTRELASQVHRYASHLATGLGLDIAIITGGVPYAPQEQAL 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +++  +  +   ++ +VLDEAD MLD+GF   ++ I   + +++ 
Sbjct: 134 KENIDILVATPGRLMEYLDKELFDAQSVEILVLDEADRMLDMGFSSAVQSIAIEAQQRKH 193

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+     +                  R      ++ +        +   + +IL
Sbjct: 194 NMLFSATLEGGGVSRFAEMLLTNPVTIETKPPRSEKAKIHQWMHLADDKEHKFALLCDIL 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      AIVF  TR  V+     L +       + G++ Q+ R  AL     G   V +
Sbjct: 254 KREEVSRAIVFVKTREVVASLEGQLQQAGIHCAFMRGDMEQKARFQALGRFTKGEVNVLL 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   ++
Sbjct: 314 ATDVAARGIDIDGITHVINFDMPRSADTYVHRIGRTGRAGNKGTAISLVEAHDMRVVAKI 373

Query: 360 FREANVSVVWEPAPSV 375
            R     +      S+
Sbjct: 374 ERYIEQPLKRRVIDSL 389


>gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
           (rhlE gene) [NC10 bacterium 'Dutch sediment']
          Length = 479

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 192/366 (52%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   G+ + T +Q   + P L  +DV+ SA TGSGKT AF L +   L+ + 
Sbjct: 8   LNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPILHCLMEK- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL +APTRELA Q+   L  L A T +  A   GGVS+  + +  + G  
Sbjct: 67  ----PRGTTRALVLAPTRELAAQISDHLRELAAHTPLKGAAVYGGVSMGPQEQAFRRGVD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH +     ++ ++ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 123 VLIATPGRLLDHFQYPYARLAGIEHLVLDEADRMLDMGFLPDIRRILQHVPKKRQTLLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA++  ++ V +NI  +    + I + A  V    +    + +++   +K+
Sbjct: 183 ATLPAPIMELARDMLQNPVSLNIERKAAPAAGITHVAYPVPHELKSTLFLELVKNSASKH 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + F  T+   +R    L +H      + G  SQ +R+ AL   + GR RV +ATD+AAR
Sbjct: 243 VLAFTRTKHRANRLADFLEKHGVTCERIHGNRSQAQRTEALASFKRGRCRVLVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L LV++ ++   PE+ +HR GRTGR    G +  ++  N +     +       
Sbjct: 303 GIDVEALGLVVNFDVPQLPEDYIHRVGRTGRVDATGDAYTLVSPNEEGTLRAIESNIGTR 362

Query: 367 VVWEPA 372
           +  +  
Sbjct: 363 LPRQKV 368


>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
 gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
           700122]
          Length = 721

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 191/368 (51%), Gaps = 6/368 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   +    A+ + GY   T VQE  +   L  +D++ +A+TG+GKT AF L    
Sbjct: 25  TFNDLGLSEKALSAVVDLGYSEPTPVQEKAIPVVLEGRDLIAAAKTGTGKTAAFSLPTLD 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D       PL + + PTRELA Q+      +  +T     V +GGV    + + 
Sbjct: 85  QLRYRADD----EGPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKK 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I++ TPGRL D +R    ++ +++ +VLDEAD MLD+GF   +  I+D+ P +R
Sbjct: 141 LRAGADIIIATPGRLLDLMRQGAADLGNVEKLVLDEADRMLDMGFWPQVSEIVDAIPAER 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSATI  +   +  +  KD   + IA        ID   +      +   + + +R
Sbjct: 201 QTLLFSATIDRSQDKVMFSLLKDPEIIEIAHRGDVADLIDQYVIKTDRRLKPALLNSFVR 260

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    IVF  T+      TK L +      A+  + SQ +R+ AL   R+G+  V +A
Sbjct: 261 ERGGFRVIVFTRTKGGADNCTKRLRKIGIATEAIHADRSQAQRARALDNFREGKTHVLVA 320

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV +RGID+P+++ VI+ +L   PE+ +HR GRTGRAG +G +V  +  + +   + + 
Sbjct: 321 TDVLSRGIDVPEVDYVINYDLPMMPEDYVHRIGRTGRAGARGYAVSFVTPDTRNLLKSIQ 380

Query: 361 REANVSVV 368
           +  + ++ 
Sbjct: 381 KFIDQTIE 388


>gi|320034926|gb|EFW16869.1| ATP-dependent RNA helicase dhh1 [Coccidioides posadasii str.
           Silveira]
          Length = 512

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 175/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + S      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKISK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 SDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQ 401

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 402 ELGTEIQPIP-PSIDK 416


>gi|303310497|ref|XP_003065260.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104922|gb|EER23115.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 510

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 175/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 47  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + S      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 107 ---TNPKISK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 161 SDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 221 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 279

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 280 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLVCS 339

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 340 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQ 399

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 400 ELGTEIQPIP-PSIDK 414


>gi|224127608|ref|XP_002320116.1| predicted protein [Populus trichocarpa]
 gi|222860889|gb|EEE98431.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 170/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 113 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 172

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V    GG S+  +   L
Sbjct: 173 IDQDNNFI------QVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRL 226

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +VLDEAD++L   F+  IE ++   P  R+
Sbjct: 227 YQPVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSIEQLIRFLPSSRQ 286

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 287 ILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 345

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 346 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 406 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 465

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 466 ELGTEIKQIPPHIDQAI 482


>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
 gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
          Length = 407

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++  V+ EA+ E GY   T +Q   +   L  KD+L SA TG+GKT +F +  
Sbjct: 2   IRTFAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +   A     L + PTRELA+QV    + L   T + VA   GGV+     
Sbjct: 62  IQYLLDFPRK--KAGPARILVLTPTRELAMQVAEHTKALAKHTRLKVATITGGVTYDTHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ +VLDEAD MLDLGF   ++ +      
Sbjct: 120 DTLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEADRMLDLGFGPTVDRLSAECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++ L+FSAT     +     +  K    ++     R+   I         ++   A++ 
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKAPAEISAEPSTRERKKITQWYHRADNAEHKLALLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+  IVF  TR  +    + L         + GE+ Q  R+NA+   RDG   +
Sbjct: 240 HILTEQAQRTIVFLKTRERLGELRQQLDSAQIPCSWIQGEMPQDRRNNAISRFRDGSVNI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLPD+  VI+ +L  + +  LHR GRT RAG+KG ++ ++  + Q   +
Sbjct: 300 LLATDVAARGIDLPDVSHVINYDLPRSADVYLHRIGRTARAGKKGTAISIVEAHDQPMMD 359

Query: 358 RLFREANVSVVW 369
           R+ R     +  
Sbjct: 360 RVGRYTKELIKE 371


>gi|119195455|ref|XP_001248331.1| conserved hypothetical protein [Coccidioides immitis RS]
 gi|118582181|sp|Q1E5R1|DHH1_COCIM RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 512

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 175/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + S      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKISK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 SDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQ 401

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 402 ELGTEIQPIP-PSIDK 416


>gi|15223841|ref|NP_175549.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|108861889|sp|Q9C8J1|RH34_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|4836949|gb|AAD30651.1|AC006085_24 RNA helicase [Arabidopsis thaliana]
 gi|16604541|gb|AAL24276.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|18958046|gb|AAL79596.1| At1g51380/F11M15_24 [Arabidopsis thaliana]
 gi|332194539|gb|AEE32660.1| DEAD-box ATP-dependent RNA helicase 34 [Arabidopsis thaliana]
          Length = 392

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++     +   + + GY   + +Q+  L P L+ +DV+  AQ+G+GKT    +++
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   + +         L ++P+RELA Q  + ++ + A T +    CIGG S+  + 
Sbjct: 81  CQIVNISSRKV------QVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDI 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G H V GTPGR+ D I+   L    +K +VLDE+DEML  G +D I  +  + P 
Sbjct: 135 KKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPH 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++ + SAT+   I  + + +  D VR+ +  +      I      +     + + + +
Sbjct: 195 DIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCD 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI+FC+TR  V   T+ +    F V ++ G+  Q+ER + +   R  ++RV
Sbjct: 255 LYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+DV ARGID+  +  VI+ ++ +NPE  +HR GR GR GR+G+++  +  +  +  +
Sbjct: 315 LIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLK 374

Query: 358 RLFREANVSVVWEPA 372
            + R     +   PA
Sbjct: 375 DIERHYGTKIREMPA 389


>gi|88860256|ref|ZP_01134894.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88817454|gb|EAR27271.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 408

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 193/374 (51%), Gaps = 4/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  A+ + GY   TS+Q+  +   +  +D+L SA TG+GKT AF L     LL +
Sbjct: 7   DLDKKILNAIDKAGYKTPTSIQQLAIPEAMAGRDILASAPTGTGKTAAFLLPSIQYLL-D 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A   L + PTRELA Q+  +     A T + + V  GG++    +   +   
Sbjct: 66  FPRRDPGFA-RVLIMTPTRELAYQIHEQCVLFAANTHLKIGVVTGGINYGSHKDIFEKNN 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D+++ +  +  +++ ++LDEAD MLD+GFR ++  I D +  +R+  +F
Sbjct: 125 DILIATPGRLMDYMKTEEFHAENVEILILDEADRMLDMGFRSEMMKICDEATNRRQCFLF 184

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHG 243
           SAT    ++   A     D   +   S  ++   I     L  + + + + +  IL+   
Sbjct: 185 SATLEGDSVERFADTILNDPALLEAESSRKEQGKILQWVHLADSRNHKLDLLEAILKAED 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF  TR  +     +L     +   L GE+ Q +R  A+   + GRA + +ATDV
Sbjct: 245 MSKAIVFVKTREKLEELVGLLVARDIKTAWLRGEMPQDKRMAAMANFQSGRANILVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  VI+ ++    +  +HR GRTGRAG+KG+++ ++  +     +++ R  
Sbjct: 305 AARGIDVTDISHVINYDMPRTADIYVHRIGRTGRAGKKGVAISLVEAHDVGILKKIERYT 364

Query: 364 NVSVVWEPAPSVEA 377
             ++       +EA
Sbjct: 365 EQNLKRRNIKGLEA 378


>gi|322703781|gb|EFY95385.1| ATP-dependent RNA helicase ded-1 [Metarhizium anisopliae ARSEF 23]
          Length = 665

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S      
Sbjct: 183 LDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFING 242

Query: 67  DRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               PA+A           P +L +APTREL  Q+  E      ++ V   V  GG  + 
Sbjct: 243 PSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIG 302

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--- 172
            + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I   
Sbjct: 303 SQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEG 362

Query: 173 -LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    I  LA+++ KD V +++        +I  +   V   D+
Sbjct: 363 EDMPPVADRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEFVEDIDK 422

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  AL+  R
Sbjct: 423 RSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERERALEFFR 482

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     + 
Sbjct: 483 NGRCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG 542

Query: 352 MQ---RRAERLFREANVSVVWEPAPSVEAI 378
            +   R    L +EAN  V     P +EAI
Sbjct: 543 NRGIVRELMELLKEANQEVP----PFLEAI 568


>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
 gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
          Length = 432

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     +  AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + L +   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLIGQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    + V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|119469628|ref|ZP_01612497.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
 gi|119446875|gb|EAW28146.1| ATP-dependent RNA helicase [Alteromonadales bacterium TW-7]
          Length = 425

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 116/392 (29%), Positives = 194/392 (49%), Gaps = 11/392 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A 
Sbjct: 9   KKFSDFAIAPEVVA-GLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTAT 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R
Sbjct: 68  CHRLLQSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++ D  P 
Sbjct: 126 AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPD 185

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + L   FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++
Sbjct: 186 TSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIKEELFHPSQEDKIKLLL 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++       AIVF +T+ S       L     +V  L+G+++Q++R + L     G   
Sbjct: 246 TLIEEEWPDKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELD 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++    +      
Sbjct: 306 FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNL 365

Query: 357 ERLFREANVSVV---WEPAPSVEAIRERDAQR 385
             +      S+    ++ A  ++ + +   QR
Sbjct: 366 HEIEEYIEHSIPLSHYDKAALLDDLTKPIIQR 397


>gi|91793927|ref|YP_563578.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715929|gb|ABE55855.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 422

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 192/372 (51%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           +   + +A+ E GY   T VQ+A++   L  +DVL SA+TG+GKT AF L +   L   +
Sbjct: 8   LSSQLQDAVKECGYDATTPVQQAVIPVALLGQDVLASAETGTGKTAAFALPILMNLSQID 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P     AL + PTRELA+Q+ +          +      GG S++ +R+ L  G 
Sbjct: 68  TQTLTPEQRLRALVMTPTRELAIQIEQNFLSYSRYLELNSLAVYGGASINPQRKALAQGV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I    L++SH+  +V+DEAD MLDLGF  DIE +     ++R+ +MF
Sbjct: 128 DVLVATPGRLFDIIGQHELDLSHVTHLVIDEADRMLDLGFVKDIEKVQRLVARQRQTMMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +  LA+         ++AS     +       LV    +   +  ++  +  +
Sbjct: 188 SATFSDEVQVLAQKMLNQPAIFHLASSTTASTV-SQEVYLVDKRRKAELLSELIGRNNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST+ +       L     +     G+ SQ  R+ AL+  + G+ R+ IATD+AA
Sbjct: 247 QVMVFTSTKETAEHLLSELTLDGLKAAVFHGDKSQGARNKALEEFKQGQLRILIATDLAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L LVI+ EL   PE+ +HR GRTGRAG  G ++  +  N Q+    +  +  +
Sbjct: 307 RGLDIQALPLVINFELPPEPEDYVHRVGRTGRAGMAGHAISFVSPNEQQLLIDVEAQVGL 366

Query: 366 SVVWEPAPSVEA 377
           ++  +  P  E 
Sbjct: 367 TLESKVLPGYEE 378


>gi|322494127|emb|CBZ29424.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 622

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/388 (28%), Positives = 186/388 (47%), Gaps = 17/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ +   + +L  N
Sbjct: 148 LAPALAENVNRCRYQKPTPVQKYGIPCVLNGSDLMACAQTGSGKTAAYLIPAINFMLVNN 207

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              S      SAP AL ++PTREL++Q+  E      +TG+   V  GG     +  +L 
Sbjct: 208 LNRSKPTNSQSAPSALVLSPTRELSIQIYEEGRKFTYRTGIRCVVVYGGADPRHQIHELT 267

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  ++V TPGRL D         S ++ +VLDEAD MLD+GF   I  I+         
Sbjct: 268 RGCGLLVATPGRLSDMFTRGYTRYSDVRFLVLDEADRMLDMGFEPQIRAIVQGPDSDMPP 327

Query: 183 LM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT    I  +A+ +      + +        +I      V   D+   ++
Sbjct: 328 PGERQTLLYSATFPKEIQQMAREFLYHHHFLQVGRVGSTTENITQDVRWVEDVDKRGCLL 387

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  +  +VF   +       + L +      ++ G+  Q+ER  AL + + G  R
Sbjct: 388 EVLKEHQGERVLVFVEKKRDADYLERYLRQSRIPCSSIHGDRVQREREEALDIFKSGVCR 447

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P++ +V+  +L SN ++ +HR GRTGRAG++G ++       +   
Sbjct: 448 VLVATDVASRGLDIPNVAVVVQYDLPSNIDDYVHRIGRTGRAGKRGTALSFFNDKNRNIV 507

Query: 357 ER---LFREANVSVVWEPAPSVEAIRER 381
           +    L RE N +V     P V+A+ ++
Sbjct: 508 DDLIPLLRETNQTV----LPEVQALAKK 531


>gi|149910902|ref|ZP_01899534.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
 gi|149806056|gb|EDM66039.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Moritella sp.
           PE36]
          Length = 431

 Score =  194 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 189/376 (50%), Gaps = 5/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q +   +++ GY   T +Q   +   L  +D++  AQTG+GKT AF L +   L+AE
Sbjct: 7   NLNQNLINTVTKLGYETPTPIQAQAIPAILEGRDIMGGAQTGTGKTAAFALPIIHQLMAE 66

Query: 66  N-----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                    +      AL + PTREL+ QV +        + +   +  GGVS++ + + 
Sbjct: 67  QLTANATEPTAKKQIRALILTPTRELSQQVHKSFVTYSEDSELTSELVYGGVSINPQVKA 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA I+V TPGRL D +  + L +  ++ +V DEAD MLD+GF ++I  IL   PKKR
Sbjct: 127 LVQGADILVATPGRLLDLLDRETLTLEFVEKIVFDEADRMLDMGFMEEIRRILKHLPKKR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT   AI  L+K+   D + V + + N     ++     V    +      ++ 
Sbjct: 187 QTMLFSATFDDAIFKLSKSLLNDPLLVEVDTRNAAAEQVEQIVYAVDNDRKRELTSYLIG 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+       K + +   + +A+ G+ SQ  R   L+  ++G+ R  +A
Sbjct: 247 SRNWHQVLIFTRTKQGADSLAKEMCKDGIKTIAVHGDKSQGARERGLEDFKNGKVRALVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L+ VI+ EL    E+ +HR GRTGRAG  G +  ++        E + 
Sbjct: 307 TDVAARGLDIEQLKHVINFELPFKAEDYIHRIGRTGRAGLSGTATSLVSIGENWLLEEIE 366

Query: 361 REANVSVVWEPAPSVE 376
              +  +V +  P  E
Sbjct: 367 TLLDTRLVAQWLPGYE 382


>gi|322504299|emb|CAM41648.2| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 602

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 199/385 (51%), Gaps = 6/385 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 144 MLEFSDLVAPDAIHQAFMDAGFQRPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPA 203

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 204 ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKSLTRVPSIMTTCVYGGTPKGPQ 262

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 263 QRSLRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 322

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 323 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKLE 382

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 383 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 442

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+ +L++V++ ++  N E+ +HR GRTGRAG+ G +   +      +
Sbjct: 443 AILVATDVAARGLDIKNLDVVVNYDMPLNIEDYVHRIGRTGRAGKTGDAYSFVSSADNSK 502

Query: 356 AERLFREANVSVVWEPAPSVEAIRE 380
             R   E  +    E +P + A+ +
Sbjct: 503 TIRDLIELLLRAKQEVSPELYAVCQ 527


>gi|296813451|ref|XP_002847063.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
 gi|238842319|gb|EEQ31981.1| ATP-dependent RNA helicase DBP2 [Arthroderma otae CBS 113480]
          Length = 417

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 106/360 (29%), Positives = 177/360 (49%), Gaps = 8/360 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +  +G+V  T +Q       L  +DV+  A+TGSGKT+ + L     + A+    +P   
Sbjct: 4   VKAQGFVKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ-PLLAPGDG 62

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+ L +APTRELAVQ+  E+      + +      GGV    + RDL  G  + + TPGR
Sbjct: 63  PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLTRGVEVCIATPGR 122

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +     N+  +  +VLDEAD MLD+GF   I  I+      R+  M+SAT    + 
Sbjct: 123 LIDMLESGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTCMWSATWPKDVR 182

Query: 195 TLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            LA ++ +D ++V I S+    N + + I          DR    +  +        ++F
Sbjct: 183 QLANDFLQDYIQVYIGSQDLSANHRITQIVEVVSEFEKRDRMIKHLERIMEDKKSKVLIF 242

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+      T+ L +  +  +++ G+  Q ER   L   + G++ + +ATDVA+RGID+
Sbjct: 243 TGTKRVADDITRFLRQDGWPALSIHGDKQQSERDWVLNEFKSGKSPIMVATDVASRGIDV 302

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367
            D+  V++ +  +N E+ +HR GRTGRAG  G ++ +         R   ++  E+   +
Sbjct: 303 RDITHVLNHDYPNNSEDYVHRIGRTGRAGANGTAITMFTTENAKQARDLVKILTESKQQI 362


>gi|2500520|sp|Q40467|IF414_TOBAC RecName: Full=Eukaryotic initiation factor 4A-14; Short=eIF-4A-14;
           AltName: Full=ATP-dependent RNA helicase eIF4A-14
 gi|485943|emb|CAA55742.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H
Sbjct: 106 -----LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  ++     I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|323519553|gb|ADX93934.1| superfamily II DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 606

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 158/599 (26%), Positives = 244/599 (40%), Gaps = 53/599 (8%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G   +          
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRFEGEGN------ 416

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 417 -------FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPR 469

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P  +F      G D  RR    D+ 
Sbjct: 470 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDRPKRSF-----GGEDRPRREFNSDRP 516

Query: 531 IQLKYLG------------GEKPDFRGYKSSGFKSKNSQ----DGATKRFKRFKGASKN 573
            +                 G + D++  + +GF  +  +    +   +R   F    K 
Sbjct: 517 RREGGFNDKPRFDSNDDNRGNRVDYKPRRENGFGDRPQRSFGGEDRPRREGGFGDRPKR 575


>gi|320103060|ref|YP_004178651.1| DEAD/DEAH box helicase domain-containing protein [Isosphaera
           pallida ATCC 43644]
 gi|319750342|gb|ADV62102.1| DEAD/DEAH box helicase domain protein [Isosphaera pallida ATCC
           43644]
          Length = 422

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 194/375 (51%), Gaps = 7/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + ++   AL    Y   + +Q A + P L  +DV+  A+TG+GKT AF L L        
Sbjct: 20  LSRLTLAALKTVNYRVPSPIQAAFIPPALEGRDVIGQAKTGTGKTAAFSLPLIEMHEPGQ 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P A+ +APTREL  Q+  E E L     +VV    GG  + R+ R L  G  
Sbjct: 80  P------GPQAIILAPTRELVQQICGEFERLARGRDLVVRGIYGGEPIERQLRSLAKGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ DH++   +++  +  VVLDEAD MLD+GFR DIE IL   P+  + L+ S
Sbjct: 134 VVVGTPGRVIDHLQRGTMSLEGVYHVVLDEADRMLDIGFRPDIERILRKVPQPHQTLLLS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP +  LA  Y  + V +N++ +      I  + + V  + +   ++++L     + 
Sbjct: 194 ATLSPEVRRLAARYMHEPVELNLSRDEPSVEKIVQKYIPVDHNRKMELLLHLLELEKPRQ 253

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC T+    +  + LA     V  + G+L Q  R+  ++  RDG   + +ATDV  R
Sbjct: 254 CIVFCRTKRGADKLAQRLARRYPGVATIHGDLPQTARNRVMRGFRDGSIPILVATDVVGR 313

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  V++ ++  +PEN LHR GRTGR G+ G++   +  +       +    N +
Sbjct: 314 GIDVEEISHVVNYDIPDDPENYLHRIGRTGRMGKDGVAYTFVGPDEGIPLTNIEVLINKT 373

Query: 367 VVWEPAPSVEAIRER 381
           +     P  E + ER
Sbjct: 374 LERVVIPGFE-VTER 387


>gi|313114933|ref|ZP_07800430.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622755|gb|EFQ06213.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 395

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 127/355 (35%), Positives = 198/355 (55%), Gaps = 7/355 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
              I +A+   G+  +T +QE  +   +   DV+  A TG+GKT AFG+ +A  +L EN 
Sbjct: 9   SDAIHKAVERMGFAEMTEIQEKTIPVMMAGYDVIAKAPTGTGKTCAFGIPVAEHILPEN- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAH 126
                  P A+ +APTRELA Q+ +ELE L      V  A   GG ++ ++ + L  G  
Sbjct: 68  -----KYPQAVIMAPTRELAQQIAQELEELTYFMPEVQVACVYGGANMEKQAKRLAEGCQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFS
Sbjct: 123 IVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKSLSMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQ +A  + +  +      I    +  +  ++ + +  I+     K 
Sbjct: 183 ATISREVMDIGWLYQHNAEEITVQPKEESQPKITQYMLETSGRNKLSDLAQIIIGENYKR 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAAR
Sbjct: 243 VMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQNFRDGKLAILVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++ S  E+  HR GRTGRA ++G+S        ++R + L R
Sbjct: 303 GIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR 357


>gi|222617918|gb|EEE54050.1| hypothetical protein OsJ_00740 [Oryza sativa Japonica Group]
          Length = 468

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 181/369 (49%), Gaps = 32/369 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 98  FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                                 
Sbjct: 157 PILAPGDGPIVLVLAPTRELAVQIQQEATKFG--------------------------VE 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 191 IVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+       
Sbjct: 251 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 310

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 311 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 371 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILE 430

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 431 EAGQKVSPE 439


>gi|326493772|dbj|BAJ85348.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 192/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMRQFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R    
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 359 LFREANVSVVWEPA 372
           + +  NV +   PA
Sbjct: 395 IQKFYNVVIEELPA 408


>gi|224009464|ref|XP_002293690.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
 gi|220970362|gb|EED88699.1| eukaryotic translation initiation factor 4A [Thalassiosira
           pseudonana CCMP1335]
          Length = 369

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 194/374 (51%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            IP+ +   +   G+   +++Q+  + P +  +D++  AQ+G+GKT  F +   + L  +
Sbjct: 2   EIPEELLRGIYAYGFEKPSAIQQRAIKPTMLGRDLIAQAQSGTGKTATFAIGTLAKLDPK 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      +L +APTRELA Q+ + +  L     + V  C+GG +V  + R LQ G 
Sbjct: 62  ------LRECQSLILAPTRELAQQIQKVVIALGDYMELQVHACVGGTAVRDDIRTLQGGV 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L +  ++   LDEADEML  GF+D I  I    P+  ++ +F
Sbjct: 116 HVVVGTPGRVYDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPESVQVCLF 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGA 244
           SAT+   +  + + + +D VR+ +  +      I    + +     + + + ++      
Sbjct: 176 SATMPLDVLEVTQRFMRDPVRILVKKDELTLEGIKQFYIAVEREEWKLDTLCDLYETLTI 235

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI++C+TR  V    + + E  F V  + G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 236 TQAIIYCNTRRKVDWLQEQMQERDFTVSCMHGDMDQRERDIIMREFRSGSSRVLITTDLL 295

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  + +   R    + +   
Sbjct: 296 ARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEGDVRYLRDIEQFYQ 355

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 356 TEITEMPMNVADLI 369


>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 417

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 193/370 (52%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + LSE GY   T +Q   +   L  +D++  AQTG+GKT AF L L   L+ ++
Sbjct: 11  LSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPLLEQLM-QH 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL + PTRELAVQV   +      TG+  A+  GGVS+  +   LQ G  
Sbjct: 70  PASDTARPIRALVLVPTRELAVQVFDSVVRYGQGTGLTSALVYGGVSIAAQVEALQAGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+R   L++ HL  +V DEAD MLD+GF D+I+ +L   P  R+ L+FS
Sbjct: 130 LLIATPGRLLDHLRQGALSLEHLSHLVFDEADRMLDMGFMDEIKALLKQIPADRQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L++   +D   + +A  N   ++++ R   V    +   + ++++  G   
Sbjct: 190 ATCDDNLFALSRVLLRDPELIEVAPRNTTAAEVEQRVYAVDGERKVALVEHLIKVKGWAP 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAAR
Sbjct: 250 VLIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGAREKVLLAFRAGTLQALVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL  VI+ E     E+ +HR GRTGRAG KG+++ +         E++    +  
Sbjct: 310 GLDILDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVLDTR 369

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 370 LPQQWFPGFE 379


>gi|58263430|ref|XP_569125.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108386|ref|XP_777144.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687070|sp|Q5KME7|PRP5_CRYNE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|50259829|gb|EAL22497.1| hypothetical protein CNBB3750 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223775|gb|AAW41818.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1072

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 191/375 (50%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ   + +  +G+   TS+Q   +   +  +DV+  A+TGSGKTVAF L +   +  + 
Sbjct: 410 LPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR 469

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S +  P+A+ ++PTRELA Q+ +E +       +  + C+GG S+  +   ++ GA 
Sbjct: 470 P-VSGSEGPIAVVMSPTRELASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAE 528

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +V+ TPGR+ D +      +++++    +V+DEAD M D+GF   +  I+++     + +
Sbjct: 529 VVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPSAQKV 588

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----- 238
           +FSAT    + +LA+      + + +   +    +ID R  +     +   ++ I     
Sbjct: 589 LFSATFPKTMESLARRILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMG 648

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              +       ++F   + S     + L +  +   +L G   Q +R  A++  ++G   
Sbjct: 649 EEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVP 708

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +AT VAARG+D+ +L+LVI+ +  ++ E+ +HR+GRTGRAG KG  +  I    +R +
Sbjct: 709 IIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFS 768

Query: 357 ERLFREANVSVVWEP 371
             + R    S  + P
Sbjct: 769 VDIVRALEASKAFIP 783


>gi|170585414|ref|XP_001897479.1| germline helicase protein 1 [Brugia malayi]
 gi|158595158|gb|EDP33731.1| germline helicase protein 1, putative [Brugia malayi]
          Length = 432

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA ++  L  +D+L  A+ G+GKT A+ +     
Sbjct: 39  FEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIPCIDK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P +L I PTRELA Q       L     + V V  GG  +  +   L
Sbjct: 99  IDVEK------KYPQSLIIVPTRELAFQTSNICVDLSKHLNLKVMVTTGGTELRNDIMRL 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D +     ++SH   +VLDEAD++L   F+  ++ ++   P  R+
Sbjct: 153 NGTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQ 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    + T  + + ++   +N+  E             V    + + +  + R 
Sbjct: 213 IMLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGV-TQYYAYVQEKQKVHCLNTLFRK 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++Q  R+      R G  R  + +
Sbjct: 272 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLVCS 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+  
Sbjct: 332 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRIEA 391

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 392 ELRTRIAPIP 401


>gi|328767833|gb|EGF77881.1| hypothetical protein BATDEDRAFT_20569 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 422

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 166/371 (44%), Gaps = 11/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 49  FEDYFLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPVLEK 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +           AL + PTRELA+Q  +  + L     V V V  GG ++  +   L
Sbjct: 109 INIQKSHI------QALLLVPTRELALQTSQVCKLLGKHMNVQVMVSTGGTTLKDDILRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D       N+S  +  V+DEAD++L   F   IE ++    K R+
Sbjct: 163 GQTVHILVATPGRVLDLAGRGIANLSQCQTFVMDEADKLLSPEFAPIIEQLIAFCHKSRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    + T    + +    +N+  E   H         V    + + +  +   
Sbjct: 223 IFLFSATFPMMVKTFKDKFLQKPYEINLMDELTLHGV-TQYYAYVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++ + V    + + E  +    +   + Q  R+      R G+ R  +  
Sbjct: 282 LQINQSIIFCNSTSRVELLARKITELGYSCFYIHARMMQSHRNRVFHDFRSGKTRHLVYL 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
               RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 --LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYDDRFSLYKIEQ 399

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 400 ELGTEITPIPP 410


>gi|328723043|ref|XP_001951330.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Acyrthosiphon pisum]
          Length = 446

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 174/374 (46%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 59  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQ 118

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 119 VDPKLDVI------QALVIVPTRELALQTSQICIELAKHLDIRVMVTTGGTNLKDDILRI 172

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+++ TPGR+ D +      + H + +VLDEAD++L   F+  ++ I+   P +R+
Sbjct: 173 YQRVHVIIATPGRILDLLDKSIAKVDHCRILVLDEADKLLSQDFKGMLDHIISRLPSERQ 232

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +      + +    +N+  E             V    + + +  +   
Sbjct: 233 ILLYSATFPLTVKQFMDKHLRSPYEINLMEELTLKGV-TQYYAFVQEKQKVHCLNTLFSK 291

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  +++Q  R+      R G  R  + +
Sbjct: 292 LQINQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRKGSCRNLVCS 351

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +    R+ +
Sbjct: 352 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQ 411

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 412 ELGTEI--KPIPKV 423


>gi|209808970|ref|YP_002264508.1| ATP-dependent RNA helicase DbpA [Aliivibrio salmonicida LFI1238]
 gi|208010532|emb|CAQ80900.1| ATP-independent RNA helicase (DEAD/DEAH box helicase) [Aliivibrio
           salmonicida LFI1238]
          Length = 462

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 133/377 (35%), Positives = 205/377 (54%), Gaps = 7/377 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L + L  +
Sbjct: 10  NLNPYLLQNLDTLGYTEMTPIQAQSLPFMLEGKDVIAQGKTGSGKTAAFGLGLLANLDVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  E+  L      + V    GGV    +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAVEIRKLARSIHNIKVLTLCGGVPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+ +L   VLDEAD ML++GF+D I+ +LD +P KR+ L+
Sbjct: 124 AHIIVGTPGRVEEHLRKGYLNLDNLNTFVLDEADRMLEMGFQDAIDLVLDHAPAKRQNLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A     + +      +  + S   +   +    DR  A+  +L  H  
Sbjct: 184 FSATFPPQIKSIADRIMNNPIMTKAEDKIEETSITQHFYKVDDFEDRLKALQILLLKHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L    F V AL G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESTVIFCNTKRVTQEVADELRHFDFSVTALHGDLEQRDRDKALVRFANKSTSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+ ELS +PE  +HR GRTGRAG+KG+++ +          ++    +
Sbjct: 304 ARGLDIDSLDAVINFELSRDPEVHVHRIGRTGRAGKKGIALSLFNNKETNSFAQIEDYMS 363

Query: 365 VSVVWEPAPSVEAIRER 381
           +++  EP PS + + E+
Sbjct: 364 LTLNDEPLPSEDHLSEQ 380



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%)

Query: 447 RDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQP 506
            D+    +     + +F       +  G K K     ++  L    G++ + +G I V  
Sbjct: 367 NDEPLPSEDHLSEQPHFPEMITLWIDGGKKNKLRPGDILGALTGKDGVDGKQVGKINVFD 426

Query: 507 DLTFVEVSADGVDLLRRTVKLDK 529
              +V V         + ++  K
Sbjct: 427 FHAYVAVHTSIAKAALQKLETGK 449


>gi|73965241|ref|XP_861914.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 15 [Canis
           familiaris]
          Length = 620

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 172/385 (44%), Gaps = 14/385 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D           
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRVSTPKNPD 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ-------HSDIDYRAVLVALSDRDNAIVNI 238
             T+  + T   +  Q     +               + +I     +    ++D  ++ +
Sbjct: 279 RQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRL 338

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +    ++     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A
Sbjct: 339 MEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKA 398

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 399 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 458

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
              L    REAN ++  +    VE 
Sbjct: 459 VSDLISVLREANQAINPKLLQLVED 483


>gi|84468270|dbj|BAE71218.1| putative DEAD-box protein abstrakt [Trifolium pratense]
          Length = 588

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 142 IKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPM 201

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               + E       P   P  L I P+RELA Q    +E             +   +CIG
Sbjct: 202 IMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIG 261

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI 
Sbjct: 262 GIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIR 321

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     + VN+      + D+      V    
Sbjct: 322 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEA 381

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 382 KIVYLLECLQKTPPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 440

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 441 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 500

Query: 351 NMQR----RAERLFREANVSVVW 369
           N         + L +EA   +  
Sbjct: 501 NQSETTLLDLKHLLQEAKQRIPP 523


>gi|146418894|ref|XP_001485412.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
 gi|152013508|sp|A5DIP0|DHH1_PICGU RecName: Full=ATP-dependent RNA helicase DHH1
 gi|146390885|gb|EDK39043.1| hypothetical protein PGUG_03141 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 547

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 98/412 (23%), Positives = 178/412 (43%), Gaps = 9/412 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE   + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 29  KSFEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPAL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++         L + PTRELA+Q  + ++ L     +   V  GG  +  +  
Sbjct: 89  QQVKTKLNKI------QVLILVPTRELALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVM 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    HI+VGTPGR+ D       + S     V+DEAD+ML   F+  IE IL+  PK 
Sbjct: 143 RLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKMLSREFKGIIEQILEFFPKN 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   A+ +    +      +N+  E             V    + + +  + 
Sbjct: 203 RQSLLFSATFPLAVKSFMDKHLNKPYEINLMDELTLRGI-SQFYAFVEEKQKLHCLNTLF 261

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC++   V    K + E  +       ++ QQ R+      R G  R  +
Sbjct: 262 SKLKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLV 321

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  I  + ++    +
Sbjct: 322 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFNI 381

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             E    +   P+    ++   + +  +  P  +D +    +        ++
Sbjct: 382 ETELGTEIKPIPSDIDRSLYVTEDEASIPRPFKIDELPKGNEHSRKRNGYEY 433


>gi|308498555|ref|XP_003111464.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
 gi|308241012|gb|EFO84964.1| hypothetical protein CRE_03767 [Caenorhabditis remanei]
          Length = 405

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 199/382 (52%), Gaps = 12/382 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 30  TFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 90  SLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 144 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + ++++ 
Sbjct: 204 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q++R   ++  R G  RV I
Sbjct: 264 DTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLI 323

Query: 300 ATDVAARGIDLPDLELV---IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +TDV ARG+D+P + LV   I+ +L +N E  +HR GR+GR GRKG+++  + Q+  R  
Sbjct: 324 STDVWARGLDVPQVSLVSNVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRIL 383

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             + +  +  +   P    + I
Sbjct: 384 RDIEQYYSTQIDEMPMNIADII 405


>gi|322436878|ref|YP_004219090.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
 gi|321164605|gb|ADW70310.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX9]
          Length = 532

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 123/407 (30%), Positives = 212/407 (52%), Gaps = 3/407 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +   L+  G+   T VQ   + P L  +D+L +A TG+GKT++F + +   + A 
Sbjct: 68  NISASLKSRLAAGGFATPTPVQAKAIPPALEGRDILATASTGTGKTLSFLIPMIERMEAN 127

Query: 66  NDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++  +        +L + PTRELA+QV      +  ++     +  GG+S + +   L  
Sbjct: 128 SEPSTRGKKGPIRSLILLPTRELAMQVLEAYAKINPQSKSDSVLVCGGLSENTQLDQLSR 187

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +R + +N++ ++ +VLDE D MLD+GF   I  I+ + PK R+ +
Sbjct: 188 GPRLVVATPGRLEDFLRRRSVNLNFVEMLVLDEVDRMLDMGFLPAIRRIVGALPKTRQTM 247

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            +SAT+   IT + ++Y +  VR+ I + ++    ++ +   V    +   +  +L  H 
Sbjct: 248 CYSATLDANITEIVRDYVQKPVRIEIGTTSKPSDQVELKVFTVMQDQKLGLLNQMLNEHE 307

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+    R +K L +       + G+ SQ +R++AL+    GR R+ +ATDV
Sbjct: 308 GTF-LVFSRTKHGADRISKKLEKLGHVADVIHGDRSQSQRTSALKGFSTGRHRILVATDV 366

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ D+  V++ +L    E+ +HR GRTGRAG+KG++   +    +  A ++ RE 
Sbjct: 367 AARGIDVRDIAHVVNYDLPGTTEDFVHRIGRTGRAGKKGVATTFVMPQERSDARKMEREL 426

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +   W+ A       ER+    L  P  L +++    K  DV   +
Sbjct: 427 KIKFEWKEADKNLEKEERNKPVDLSGPSDLMNMETRAWKTGDVSAER 473


>gi|171847136|gb|AAI61525.1| LOC549577 protein [Xenopus (Silurana) tropicalis]
          Length = 678

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 181/380 (47%), Gaps = 14/380 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N  + +   +++ GYV LT VQ+  +   L  +D++  AQTGSGKT AF L + S
Sbjct: 253 TFEEANFCETLSRNVTKAGYVKLTPVQKHSIPIILAGRDLMACAQTGSGKTAAFLLPILS 312

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ E     +F P   P A+ IAPTREL  Q+  +       T V   V  GG+     
Sbjct: 313 HMMNEGITASQFLPLQEPQAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIHPVHA 372

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RD++ G +I+  TPGRL D I  + + +S LK +VLDEAD MLD+GF   +E ++ S  
Sbjct: 373 MRDVERGCNILCATPGRLMDIIGREKIGLSKLKYLVLDEADRMLDMGFAPVMENLIGSPG 432

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDRD 232
              +    +   S       +      ++ +             SD++   + +    + 
Sbjct: 433 MPAKEERQTLMFSATYPAEIQRLASKFLKSDHLFVVVGLVGGACSDVEQTILEIQEYRKR 492

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + +V IL+  G +  ++F +T+         L +  F   ++ G+  Q +R  A++  R 
Sbjct: 493 DKLVEILQSSGNERTMIFVNTKKKADVIAGYLCQEHFPTTSIHGDREQCQREEAIRDFRS 552

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G +      N 
Sbjct: 553 GKCPVIVCTAVAARGLDIENVQHVINYDVPKEIDEYVHRIGRTGRCGNVGKATSFFNVNE 612

Query: 353 QRRAER----LFREANVSVV 368
                R    +  +A+  V 
Sbjct: 613 DHVVARPLVKILTDAHQEVP 632


>gi|218187683|gb|EEC70110.1| hypothetical protein OsI_00766 [Oryza sativa Indica Group]
          Length = 470

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 181/369 (49%), Gaps = 32/369 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ + + +++ G+V  T +Q       LR +D++  A+TGSGKT+A+ L     + A+ 
Sbjct: 100 FPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ- 158

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E                                 
Sbjct: 159 PILAPGDGPIVLVLAPTRELAVQIQQEATKFG--------------------------VE 192

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D I     N+  +  +VLDEAD MLD+GF   I+ I+      R+ L +S
Sbjct: 193 IVIATPGRLIDMIESHHTNLRRITYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWS 252

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           AT    +  LA+N+  D  +V I SE  + +  I     +++ S + N +VN+       
Sbjct: 253 ATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDG 312

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+    + T+ L    +  +++ G+ SQ ER   L   + G++ +  ATDVA
Sbjct: 313 SRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVA 372

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFR 361
           ARG+D+ D++ VI+ +   + E+ +HR GRTGRAG KG +         R A+    +  
Sbjct: 373 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKDLINILE 432

Query: 362 EANVSVVWE 370
           EA   V  E
Sbjct: 433 EAGQKVSPE 441


>gi|156083731|ref|XP_001609349.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
 gi|154796600|gb|EDO05781.1| DEAD/DEAH box helicase [Babesia bovis]
          Length = 609

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 198/385 (51%), Gaps = 16/385 (4%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++ FEN I +++   +    Y   T +Q+  +   +  +D++  AQTGSGKT AF L + 
Sbjct: 149 VEDFENGIHELLMVNILRVNYTKPTPIQKHSIPVIMAGRDLMACAQTGSGKTAAFLLPIC 208

Query: 60  STLL---------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           + +L          ++   S  + P+ L ++PTRELA+Q   E       TG+   V  G
Sbjct: 209 TAMLKTGPPASRPMQSSYHSRQALPVCLVLSPTRELAMQTFTEARKFIYNTGIRAVVLYG 268

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  V R+  +L+ G  I V TPGRL D +    + +  +  +VLDEAD MLD+GF   I 
Sbjct: 269 GGEVRRQLYELERGCDICVATPGRLTDILERNRIGLHCVSYLVLDEADRMLDMGFAPQIR 328

Query: 171 FILDSSPKKR---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            +++ S   +   + +MFSAT    I  LA+++ +D + + +      +  I  R +   
Sbjct: 329 QVVEHSSMPQEGRQTVMFSATFPKEIQQLARDFLRDYLYLAVGRVGSTNEFIRQRLLYAD 388

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              + + +V +LR +     ++F  T+         L +  F  V + G+ SQQ+R  AL
Sbjct: 389 QEQKLHYLVKLLRENTNGLVLIFVETKRRADMIESYLLKENFMAVNIHGDRSQQDREEAL 448

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ++ + G   + +ATDVAARG+D+ ++  VI+ +L +N ++ +HR GRTGRAG  G++  +
Sbjct: 449 RLFKTGERPILVATDVAARGLDINNITHVINCDLPANIDDYVHRIGRTGRAGNVGVATSL 508

Query: 348 IPQNMQ---RRAERLFREANVSVVW 369
           + +  +   +    L  EAN  V  
Sbjct: 509 VSEKDRSILKDLLALLEEANQEVPQ 533


>gi|325103156|ref|YP_004272810.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972004|gb|ADY50988.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 411

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 191/376 (50%), Gaps = 11/376 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N    + E L   G+   T +QE  +   L+ KD++  AQTG+GKT ++ L + + 
Sbjct: 3   FEEFNFVPELQEGLDSMGFSKATPIQEQTIPLVLQNKDIIACAQTGTGKTASYLLPVLNK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRER 118
           +  +            L + PTRELA+Q+ +++  L   T            GV   +++
Sbjct: 63  IYQKQTE-----KINTLILVPTRELALQIDQQIMGLAYFTQATSIAVYGGGDGVDYEQQK 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G +I+V TPGR+  H+    +    L+ ++LDEAD MLD+GF DDI  I+   P+
Sbjct: 118 RSLREGVNIIVATPGRIIAHLTSGKIKFDSLEHLILDEADRMLDMGFYDDIVRIISYLPQ 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+ P I  LAK   K    V   + ++    I+  A +   + +   +++I
Sbjct: 178 KRQNLLFSATMPPRIRGLAKKILKHPAEV-NIAISKPSEGINQLAYMAFDNQKGRLLMSI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G K+ I+F S + +V      L +   +  A   +L Q +R   +   + G+  V 
Sbjct: 237 LKDGGFKSIIIFASKKETVKSINSELNKKGIKSEAFHSDLEQHQREEIMNRFKGGQLSVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDV +RGID+  ++LV++ ++  +PE+ +HR GRT RA   G ++  I    Q +  R
Sbjct: 297 VGTDVISRGIDVVGIDLVVNYDVPPDPEDYIHRIGRTARAEATGTAITFINDKDQNKFHR 356

Query: 359 LFREANVSVVWEPAPS 374
           + +     +   P P 
Sbjct: 357 IEKLIEREIEKIPLPE 372


>gi|302690998|ref|XP_003035178.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
 gi|300108874|gb|EFJ00276.1| hypothetical protein SCHCODRAFT_14350 [Schizophyllum commune H4-8]
          Length = 449

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 203/387 (52%), Gaps = 11/387 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EAL +  +   T +Q   L   L  +D++  A TGSGKT AF L +  
Sbjct: 15  TFKSLGLIDPLLEALDKMSFKAPTEIQAQALPHALEGRDIIGVASTGSGKTAAFALPILQ 74

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           A  +APTRELA Q+ ++ E L +  GV  AV +GG  +  ++  
Sbjct: 75  KLWDDP------KGLFACVLAPTRELAYQISQQFEALGSAMGVRCAVIVGGTDIMAQKVA 128

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HIVV TPGRL DH  + KG N+  +K +VLDEAD +LD+ F   I+ IL   PK+
Sbjct: 129 LAKRPHIVVATPGRLDDHLEKTKGFNLRGIKFLVLDEADRLLDMDFGPVIDKILKVIPKE 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + VRV + ++ +    +    +L+ L ++D  +V + 
Sbjct: 189 RTTYLFSATMTTKVAKLQRASLSNPVRVEVNTKYQTVDSLLQYYLLMPLKEKDTLLVYLA 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F  T    +R + +L    F  V L G+LSQ +R  AL   + G  +V +
Sbjct: 249 NTLAQNSIIIFTRTVNDAARLSIILRTLGFPAVPLHGQLSQSQRLGALSKFKSGGRKVLV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q       R+
Sbjct: 309 ATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITFVTQYDVEFIMRI 368

Query: 360 FREANVSVVWEPAPSVEA--IRERDAQ 384
            +     +   P    E   +RER  +
Sbjct: 369 EKVIGKKMELWPTDEEEVSLLRERVGE 395


>gi|164662887|ref|XP_001732565.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
 gi|159106468|gb|EDP45351.1| hypothetical protein MGL_0340 [Malassezia globosa CBS 7966]
          Length = 542

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 118/489 (24%), Positives = 216/489 (44%), Gaps = 14/489 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++     +AL   G+  +T VQE  + P L  KDVL +AQTGSGKT+AF +     L  +
Sbjct: 42  DLTPATSKALDAMGFKTMTEVQERCIPPLLAGKDVLGAAQTGSGKTLAFLIPAIEML--Q 99

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +   A+ I+PTRELA+Q+    + L A     + + +GG +   E   LQ G 
Sbjct: 100 RLKFKPRNGTGAIVISPTRELALQIFGVAKELMAHQSQTLGIIMGGANRKAEADKLQKGV 159

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++       ++LK +++DEAD +L++GF D++  I+   P++ R  M
Sbjct: 160 NLIIATPGRLLDHLQNTKGFVFTNLKTLIIDEADRILEIGFEDEMRQIVKILPQEHRQTM 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALSDRDNAIVNILR 240
             +                   + I    +  +      +   V+     R   +   L+
Sbjct: 220 LFSATQTTKVQDLARISLRPGPLYINVHEQMAASTVSKLEQGYVVCDSDKRFLLLFTFLK 279

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF ++  SV    ++L      V+ L G+  QQ+RSN      +  +   + 
Sbjct: 280 RNAGKKIIVFMNSCNSVKFHGELLNYIDVPVLDLHGKQKQQKRSNTFFEFCNAESGTLLC 339

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R G+ G S+  +  +      R  
Sbjct: 340 TDVAARGLDIPAVDWIIQYDPPDDPRDYIHRVGRTARGGKHGRSLLFLLPSELGFL-RFL 398

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-- 417
           + A V +     P  + A  +   ++++    +L     +  +        +  ++I   
Sbjct: 399 KVAKVPLNEYTFPPNKIANVQNQLEKLISKNYYLHQSAKEGYRSYIQAYGSYSLKRIYDI 458

Query: 418 --AGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
                 ++ +A G   P ++        + +   +              K       S G
Sbjct: 459 HQLDLAKVAKAFGFAVPPKVNVTIGTGLKVKKDREHNHPDDEDNDERRGKRQRVDRRSYG 518

Query: 475 SKQKAEARW 483
           ++ +  AR+
Sbjct: 519 ARDEKAARY 527


>gi|145478351|ref|XP_001425198.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392267|emb|CAK57800.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 179/358 (50%), Gaps = 8/358 (2%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+    P+ + E + + G+ + T +Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 71  FEDVYCFPRPLQELIVKAGFPSPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPAII 130

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+  + S    P  L +APTREL  Q+  +       +G+  A   GG   + ++  
Sbjct: 131 HILAQLKQNSD---PQCLIMAPTRELTHQIYEQFIKFSVGSGLKAACLFGGQEKYIQKNQ 187

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+  +  +R
Sbjct: 188 LNQHPHILIACPGRLIDLVESGCTTLKGITFLVLDEADRMLDMGFEPSIRKIVAQTRAER 247

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT    + +LA ++             +   +  I  + +++    ++  +  I
Sbjct: 248 QTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVLILTKEQKEEKLREI 307

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G K  ++FC T+    +    L +   +  +L G+  Q ER   +   + G   V 
Sbjct: 308 LKSLGPKKILIFCQTKMKCDQLQLYLIQEGMRCKSLHGDKRQSERDFVMNSFKRGDTTVL 367

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +ATDVA+RG+D+ D+E VI+ ++    E+ +HR GRTGRAG +G+S+ +       + 
Sbjct: 368 VATDVASRGLDIKDIEFVINFDMPKLIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKL 425


>gi|281203069|gb|EFA77270.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 1147

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   +   +   G+   +++Q+  + P ++  D +  AQ+G+GKT  F +    
Sbjct: 49  TFESMHLKDDLLRGIFGFGFEKPSAIQQRAILPIIKGHDTIAQAQSGTGKTATFSIGALQ 108

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++           +P  L ++PTRELA Q+ + L  L     V V   +G  ++  + R 
Sbjct: 109 SIDVS------VKSPQVLILSPTRELAQQIQKVLMALGGFMSVQVHAFVGQKTIAEDLRR 162

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+ D I  K L   H+K ++LDEADEML LGF+  I  +    P   
Sbjct: 163 LEAGVHIVSGTPGRVLDLISRKALATRHIKMLILDEADEMLGLGFQQQINDVYRYLPPAT 222

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           ++++ SAT++  +  + + +  D VR+ +  +      I      +     +   + +I 
Sbjct: 223 QIVLVSATLTQDVINMTEKFMTDPVRILLKRDELTLEGIKQFFVSVEKEEWKFGTLCDIY 282

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V+  T  + E  F V ++ G++ Q+ER   ++  R G  RV I
Sbjct: 283 DSLTITQAVIFCNTKQKVNILTDKMREANFTVASMHGDMEQKEREEIIKSFRSGENRVLI 342

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L ++ EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 343 TTDILARGIDVQQVSLVINYDLPNDRENYIHRIGRSGRFGRKGVAINFVKSSDIRILRDI 402

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 403 EQFYSTQIDEMPL 415


>gi|238020287|ref|ZP_04600713.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
 gi|237867267|gb|EEP68273.1| hypothetical protein GCWU000324_00164 [Kingella oralis ATCC 51147]
          Length = 468

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 224/446 (50%), Gaps = 7/446 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     I  AL+E+ Y   T +Q A +   L   D+L +AQTG+GKT AF L  
Sbjct: 1   MTAFTELGLGHEICTALAEQNYQTPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLPS 60

Query: 59  ASTLL-AENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L    N   SPA  P+  L + PTRELA Q+ +  +       +   V  GGV++++
Sbjct: 61  LERLKRYANASASPAMHPVRMLVLTPTRELADQIDQNTQNYIKNMPLRHTVLFGGVNMNK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L+ G  IV+ T GRL DH++ K +N+S ++ VVLDEAD MLD+GF DDI  I+   
Sbjct: 121 QTAELRAGCEIVIATVGRLLDHVKQKNINLSKVEIVVLDEADRMLDMGFIDDIRTIMQML 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT +PAI  LA+++      V +A++N  +++++   + +    +   + 
Sbjct: 181 PKPRQTLLFSATFAPAIRKLAQDFMNAPQIVEVAAQNTTNANVEEHVISIDSHRKRELLE 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVFC T+ S  + ++ L        A+ G+ SQQ R + L   + G  R
Sbjct: 241 RLIVDLNMNQVIVFCKTKQSADQVSRDLVRRGLSANAIHGDKSQQTRLDVLNQFKSGELR 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ +L  V++ E+ +  E+ +HR GRTGRAG  G+++ ++ +  Q+  
Sbjct: 301 VLVATDVAARGLDIAELPFVVNYEMPTQAEDYVHRIGRTGRAGADGVAISLMDETEQKMY 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           E +     ++    P   +E       Q   +  L  ++      +  +    +   +  
Sbjct: 361 EAI---KALTGNELPISRIEGFEPHWEQAQAEGSLKNENSPRASSRRNEREPQERSEKND 417

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSG 442
                R  R+G          S +  
Sbjct: 418 RRASSRNERSGRHQEIPTVDASKIPP 443


>gi|321252102|ref|XP_003192288.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
 gi|317458756|gb|ADV20501.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
          Length = 1063

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 192/375 (51%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ   + +  +G+   TS+Q   +   +  +DV+  A+TGSGKTVAF L +   +  + 
Sbjct: 401 LPQGCLDVIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR 460

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S +  P+A+ ++PTRELA Q+ +E +       +  + C+GG S+  +   ++ GA 
Sbjct: 461 P-VSGSEGPIAVVLSPTRELATQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAE 519

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +V+ TPGR+ D +      +++++    +V+DEAD M D+GF   +  I+++     + +
Sbjct: 520 VVICTPGRMIDLLTANNGRVTNVRRTTYIVMDEADRMFDMGFEPQVMKIINNVRPNAQKV 579

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----- 238
           +FSAT    + +LA+      + + +   +    +ID R  +     +   ++ I     
Sbjct: 580 LFSATFPKTMESLARKILVKPLEITVGGRSVVAPEIDQRVEVRDGDTKFTRLLEILGEMG 639

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              +      A++F   + S     + L +  +   +L G   Q +R  A++  ++G   
Sbjct: 640 EEHKDEDDFRALIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVP 699

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +AT VAARG+D+ +L+LVI+ +  ++ E+ +HR+GRTGRAG KG  +  I    +R +
Sbjct: 700 IIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFS 759

Query: 357 ERLFREANVSVVWEP 371
             + R    S  + P
Sbjct: 760 VDIVRALEASKAFIP 774


>gi|296159198|ref|ZP_06842024.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890457|gb|EFG70249.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 481

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  +A    +D + ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FTDDIRAMAAGILRDPLNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAENNWRHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ + TDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVVTDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|258566537|ref|XP_002584013.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
 gi|237907714|gb|EEP82115.1| hypothetical protein UREG_06980 [Uncinocarpus reesii 1704]
          Length = 512

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 174/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 53  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 112

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + S      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 113 ---TNPKISK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 166

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 167 NDTVHIIVGTPGRILDLASKGVADLSECATFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 226

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 227 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 285

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 286 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMFQQNRNRVFHDFRNGVCRNLVCS 345

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 346 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLIGWEDRYNLYKIEQ 405

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 406 ELGTEIQPIP-PSIDK 420


>gi|2370593|emb|CAA73168.1| translation initiation factor eIF4A II [Xenopus laevis]
          Length = 413

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 197/383 (51%), Gaps = 11/383 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++
Sbjct: 37  VDSFDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISI 96

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
              +  +        A  AL +APTRELA Q+ + +  L    G     CIGG +V    
Sbjct: 97  LQQIELD------MKATQALMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 150

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
           ++      HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I +      
Sbjct: 151 QKLQSEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKVL 210

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
               ++++ SAT+   +  + K + +D +R+ +  E      I      +     + + +
Sbjct: 211 SMNAQVVLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTL 270

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++        A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +
Sbjct: 271 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSS 330

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV I TD+ ARGID+  + LVI+ +L +N EN +HR GR GR G KG+++ ++ ++ +R 
Sbjct: 331 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRT 390

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + +    N +V   P    + I
Sbjct: 391 LKDIETFYNTTVEEMPMNVADLI 413


>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 463

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 214/419 (51%), Gaps = 13/419 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE +     + EA++  G+   + +Q+  +   L  +D++  A+TGSGKT AF + + 
Sbjct: 29  QTFEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPIL 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL    R        AL +APTRELA Q+  + E L A  G+  A  +GG+ +  ++ 
Sbjct: 89  QSLLRSPQR------LYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQI 142

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+      ++  +K +VLDEAD ML + F ++I  I+   P 
Sbjct: 143 ALARKPHIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPS 202

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   +FSAT++  +  L +    + +++ I  +     ++    + +    +D  +  I
Sbjct: 203 ERNTYLFSATMTSKVAKLQRASLLNPIKIEITHKFATPENLRQHYLFIPAKFKDCYLSYI 262

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++ ++F ST     + T +L    FQ + L G++SQ  R  AL   +    ++ 
Sbjct: 263 LNEVAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKIL 322

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVA+RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G++V  + Q      +R
Sbjct: 323 VCTDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQR 382

Query: 359 LFREANVSVVWEP--APSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +       +   P    +V  ++ER  +AQRI  + +   + +  ++   +      D 
Sbjct: 383 IEFLLGKKLDAYPCDEQTVLIMQERVGEAQRIATNEMKELASKRGKRHDRESDDDNTDA 441


>gi|297824637|ref|XP_002880201.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326040|gb|EFH56460.1| hypothetical protein ARALYDRAFT_483719 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 521

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 149 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  EN+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 209 IDPENNVI------QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L + F+  IE ++   P+ R+
Sbjct: 263 YQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPENRQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    + +    Y +    +N+  +             V    + + +  +   
Sbjct: 323 ILMFSATFPVTVKSFKDRYLRKPYIINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 382 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 442 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 501

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P PS+
Sbjct: 502 ELGTEI--KPIPSL 513


>gi|24662330|ref|NP_648413.1| CG6418 [Drosophila melanogaster]
 gi|7294797|gb|AAF50131.1| CG6418 [Drosophila melanogaster]
 gi|16769458|gb|AAL28948.1| LD32732p [Drosophila melanogaster]
 gi|220946788|gb|ACL85937.1| CG6418-PB [synthetic construct]
          Length = 791

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 276 FDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQ 334

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 335 KQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 394

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFS
Sbjct: 395 IIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFS 454

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 455 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 514

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 515 GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 574

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 575 ARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 631


>gi|330838649|ref|YP_004413229.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329746413|gb|AEB99769.1| DEAD/DEAH box helicase domain protein [Selenomonas sputigena ATCC
           35185]
          Length = 446

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 199/370 (53%), Gaps = 8/370 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +  P+V+ +AL+ +G    T VQE  +      +D +V AQTG+GKT+AF L L   
Sbjct: 3   FSELHCPEVLVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLER 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +         A    AL ++PTRELA+Q  R  + L    G+  A+  GG  + R++  L
Sbjct: 63  IKGN------ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    +++ TPGRL DH+R   + +S +  +VLDEADE++ LGF +D+E +L++     +
Sbjct: 117 RQKPQLIIATPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT+   I  L + Y K+   + +  E    ++I+   V      + + +  +L  
Sbjct: 177 LMLFSATMPERIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNK 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +    A+VFC T+  V+  T  LA   + V  L G+L+Q +R+  ++  R+ + ++ + T
Sbjct: 237 YQPYLAMVFCHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  +  V + +L  + E  +HR GRTGRAG KG++V  +  +   +  R+  
Sbjct: 297 DIAARGLDIEGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLRRIEA 356

Query: 362 EANVSVVWEP 371
                +  E 
Sbjct: 357 GIKARLTKEK 366


>gi|328783051|ref|XP_624586.2| PREDICTED: putative ATP-dependent RNA helicase me31b-like isoform 1
           [Apis mellifera]
          Length = 444

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 178/390 (45%), Gaps = 12/390 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 57  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQ 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 117 VDPRKDVI------QALVLVPTRELALQTSQICIELAKHMEIKVMVTTGGTDLRDDIMRI 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +     N+ H K +VLDEAD++L   F+  ++ ++   P +R+
Sbjct: 171 YQSVQVIIATPGRILDLMDKNVANMDHCKTLVLDEADKLLSQDFKGMLDHVISRLPHERQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 231 ILLYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  +++Q  R+      R G  R  +++
Sbjct: 290 LQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSS 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 350 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQ 409

Query: 362 EANVSVVWEP---APSVEAIRERDAQRILQ 388
           E    +   P    PS+   R  D   + +
Sbjct: 410 ELGTEIKPIPKVIDPSLYVARPEDNNSMEE 439


>gi|330808146|ref|YP_004352608.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376254|gb|AEA67604.1| putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 448

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 185/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L + PTRELA Q  +E+E     T +   +  GG     +   L+    
Sbjct: 64  GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ + +    L++  ++ +VLDEAD MLD+GF +D++ ++D    +++ ++FS
Sbjct: 124 ILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECTNRQQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   +     +AK           A      +             ++  +  +L     
Sbjct: 184 ATTGGSGLREMIAKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TRA   R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATDVA
Sbjct: 244 EKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + +  +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRTIKEVK 375


>gi|298708482|emb|CBJ30606.1| eukaryotic initiation factor 4A [Ectocarpus siliculosus]
          Length = 404

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 196/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   + + +   +   G+   +++Q+  + P L  KD +  AQ+G+GKT  F +++
Sbjct: 30  IETFDAMELREELLRGIYAYGFEKPSAIQQRAVKPILMGKDCIAQAQSGTGKTATFAVSI 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +         A+   AL +APTRELA Q+ + +  L     + V  C+GG +V  + 
Sbjct: 90  LQKIDVA------AADCQALVLAPTRELAQQIVKVVRALGDFMQLQVHACVGGTAVRDDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQNG HIVVGTPGR+ D I    L +  +   VLDEADEML  GF+D I  +    P+
Sbjct: 144 RTLQNGVHIVVGTPGRVYDMISRGALRLDRVGLFVLDEADEMLSRGFKDQIYDVFQYLPE 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ +FSAT+   +  +   +  + VR+ +  +      I    + +     + + + +
Sbjct: 204 RVQVALFSATMPLDVLEVTNRFMPEPVRILVKKDELTLEGIKQFYIAVDREEWKLDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   ++ + E  F +  + G++ Q ER   ++  R G +RV
Sbjct: 264 LYETLTITQAIIYCNTRRRVDWLSEKMQERDFTISCMHGDMGQGERDVIMREFRSGSSRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  + Q   R   
Sbjct: 324 LITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTQGDVRYLR 383

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            +       V   P    + I
Sbjct: 384 DIEEFYTTQVEEMPMNVADLI 404


>gi|296273792|ref|YP_003656423.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097966|gb|ADG93916.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 434

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 193/379 (50%), Gaps = 3/379 (0%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F N  +   I +AL E GY   T VQE ++   L+  DV+ +AQ+G+GKT AF L +
Sbjct: 1   MKTFNNIKLCSEILKALEEEGYEKPTEVQEKVIPVLLKNSDVIATAQSGTGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              L    D  S       +L + PTRELA Q+ + +        +   + +GG+S   +
Sbjct: 61  LQKLFETQDNDSTNKRVLRSLILVPTRELAKQIEKSISHYGRYLDIKQTIVVGGLSHKEQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G  ++V TPGRL DHI+ K +N+S +  +VLDEAD ML++GF  DIE I     
Sbjct: 121 IRKINAGIDVLVATPGRLIDHIKTKSVNLSSINNIVLDEADTMLEMGFLKDIELIFSQCA 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R + MFSATI+  I  LAK +    V + ++S+      I+ +  L+    +   +  
Sbjct: 181 KTRHIGMFSATINQNIKKLAKEFLHKPVVIEVSSQRSAVDIIEQQIYLMDEDKKIEFLSY 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  +VF +T+A     T+       +   + G++ Q  R+ AL+  +    RV
Sbjct: 241 LIGSENWEQVLVFVNTKAKADEITEQFNLDGLKTACIHGDIKQPVRARALEGFKSKSLRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  L  V++ EL     +  HR GRTGRAG  G++  ++      +  
Sbjct: 301 LVATDIAARGIDIELLPNVVNFELPETTVDYTHRIGRTGRAGNPGVATTLLCVKEYVQMA 360

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +E  +++        E
Sbjct: 361 EIEKELIINIPRLTHDEYE 379


>gi|171681521|ref|XP_001905704.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940719|emb|CAP65947.1| unnamed protein product [Podospora anserina S mat+]
          Length = 540

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 173/371 (46%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 33  FEDFGLKRSLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPALQK 92

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + ++         L + PTRELA+Q  +  + L    GV V V  GG  +  +   L
Sbjct: 93  INPKINKI------QCLILVPTRELAMQTSQVCKTLGKHLGVNVMVTTGGTGLRDDIVRL 146

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D    +  ++S     ++DEAD++L   F   IE +L   PK R+
Sbjct: 147 QDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQ 206

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +    K+   +N+  E             V    + + +  +   
Sbjct: 207 VMLFSATFPISVKDFSDKNMKEPYEINLMDELTLRGI-TQYYAYVEEKQKVHCLNTLFSK 265

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 266 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQHARNRVFHDFRNGVCRNLVCS 325

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 326 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 385

Query: 362 EANVSVVWEPA 372
           +    +   PA
Sbjct: 386 DLGTEIQPIPA 396


>gi|170725255|ref|YP_001759281.1| ATP-dependent RNA helicase SrmB [Shewanella woodyi ATCC 51908]
 gi|169810602|gb|ACA85186.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 408

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 189/386 (48%), Gaps = 9/386 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++    ++ E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L    
Sbjct: 2   LFEDLLLDPILLESLKAMGHHKPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    RFS  +    + + PTRELA Q+ R    L  +  +   +  GGV    +   
Sbjct: 62  HIIDFPRRFSGQA--RVVILTPTRELASQIHRYASHLAYELDLNTVIITGGVPYAPQEEA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V TPGRL +++     N   ++ +V+DEAD MLD+GF   +E I   S  ++
Sbjct: 120 LKGNVDILVATPGRLMEYLDKGLFNAEEVEILVIDEADRMLDMGFSAVVETIAIESVGRK 179

Query: 181 RMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT   S       +           A  + +     +  +      +   + +I
Sbjct: 180 QTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADDKEHKFKLLCSI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + AIVF  TR +V+    +L         + G++ Q++R  AL     G   V 
Sbjct: 240 LQQEETQRAIVFVKTREAVASLEGMLQRVGIPCSYMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   +
Sbjct: 300 LATDVAARGIDVEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R  +  +       ++ +R ++ +
Sbjct: 360 IERYMDQPLKRR---FIKDLRPKNKE 382


>gi|91201977|emb|CAJ75037.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 407

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 192/393 (48%), Gaps = 10/393 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   I +AL + GY  +T +QEA         D+   A+TGSGKT A  + L 
Sbjct: 1   MKFSDLELSADILKALDKMGYNEMTPIQEATYPIIFAGHDLCALAETGSGKTAACAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +           A   L I PTREL +Q   E+  + AKT V+     GG     +  
Sbjct: 61  QKVDPS------LDAIQGLVIVPTRELCMQYVEEIRKIAAKTDVIPYAVYGGFDRAAQIA 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++   HI+V TPGRL D +    L+ + +K V+LDEADE+L +GF +DIEFIL     K
Sbjct: 115 RVKQTVHILVATPGRLIDLLYEGILSFARIKCVILDEADELLKVGFLEDIEFILSCIRHK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   I  L ++   +   +++ ++      I++    V    +   +V  L
Sbjct: 175 HQTLLFSATMPDDIKKLTQDCLHEPQYISLVTKRSAPESIEHYFSYVNPKQKHEELVKYL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      A++FC+ R  V    ++L +    +  +   L+Q +RS+ ++  R  + R  I
Sbjct: 235 KGEEVNQALIFCNARHMVDSLFRLLRKDFHDIEYMHAGLAQDKRSSIIRRFRSQKIRYLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+DVA RG+D   +  VI+ ++  + E   HR+GR GR GRKG++  ++ +       ++
Sbjct: 295 ASDVAGRGLDFSHVSHVINWDMPRDGEQYTHRTGRAGRMGRKGIAFTLVAKKDLSLLSKV 354

Query: 360 FREANVSVVWE-PAPSVEAIRERDAQRILQDPL 391
                +S  W    P  E  R R  QRI +  +
Sbjct: 355 ISSRKISPCWIGKNPFNEEARSR--QRIPRKKI 385


>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 453

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 193/380 (50%), Gaps = 4/380 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     I  +L+E GY + T +Q   +   L+ K+++ +AQTGSGKT  F L +  
Sbjct: 7   SFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPMLE 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL + PTRELAVQV   +E       +      GGV    +++ 
Sbjct: 67  ML--ARGETQRKKRVRALILTPTRELAVQVCNSIEAYGKYLNLKALAVYGGVDYEPQKQA 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P  R
Sbjct: 125 LIEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPVDR 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  +  LAK    +A+++++  ++    +ID   V V    +   + ++++
Sbjct: 185 QNLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKDKKSALLSHLIK 244

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  + A++F  T+   ++    L +   Q   +    +Q  R   L   + G+ +  I+
Sbjct: 245 ENRWQQALIFIETKHGAAKLVTQLEKRGIQAECIHSGRAQAIREQILADFKSGKIQFLIS 304

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T ++ARGID+ +L LVI+ +L    +  +HR GRT RAG  G ++ ++ ++  +    + 
Sbjct: 305 TGISARGIDIDELPLVINYDLPYPADEYVHRIGRTARAGAAGEAISLVSKDDFKNLCMIE 364

Query: 361 REANVSVVWEPAPSVEAIRE 380
           +  +  +  +     E  +E
Sbjct: 365 KRLDHLIERKVVAGFEPRKE 384


>gi|189520693|ref|XP_001923830.1| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Danio rerio]
          Length = 671

 Score =  194 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L     +  + 
Sbjct: 102 FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA QV +        + +      GG     + RDL+ G  
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++ +D V++NI +     + +I     +   +++DN ++ ++    A+
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAE 340

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATD
Sbjct: 341 KENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         R+A  L R
Sbjct: 401 VASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVR 459


>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
 gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
           parvula ATCC 17745]
          Length = 432

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+++     +  AL ++G    T +QE  +    +  DV+  AQTG+GKT+AF L +
Sbjct: 1   MKSFKSLGVCDELIIALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +            L IAPTREL  Q+  E + L +   V +   IGG ++  + 
Sbjct: 61  LQRVHTD------VHQEQVLIIAPTRELIKQISDEAKELGSILNVDILPLIGGKTIEAQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +++GTPGRL DH +   L++  ++ VVLDEAD+ML +GF  DIE ++  +  
Sbjct: 115 QQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++L+FSATI   I  LAK Y    + V    ++     ID R  ++   ++   ++ +
Sbjct: 175 NRQLLLFSATIPDKIRNLAKAYMSKPISVTAEGKHITLESIDQRVYMMNPEEKTQRLIKM 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVFC+ R    R +  L      +  + G+L+Q  R+  L+     + ++ 
Sbjct: 235 IEDDNPFLAIVFCNKREGAIRLSYELTAAGLNIAEMHGDLTQGRRTQILRDFAKAKTQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V + ++  + +  +HR GRTGRAG  G++V       +    R
Sbjct: 295 VATDIAARGIDIEGITHVYNYDVPHDVDYYIHRIGRTGRAGNSGIAVTFATPQDEAWLRR 354

Query: 359 LFREANVSVV 368
           + R    ++ 
Sbjct: 355 IERAIQATLT 364


>gi|254437196|ref|ZP_05050690.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
 gi|198252642|gb|EDY76956.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
           307]
          Length = 435

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 113/361 (31%), Positives = 194/361 (53%), Gaps = 2/361 (0%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P++I E L  +G ++ T +Q   +   +  +DV+  A+TGSGKT AFGL +   LL E  
Sbjct: 10  PRLIAE-LKSQGIIDPTPIQAQAIPHAMNGRDVMGLAKTGSGKTAAFGLPMIDMLLKEQG 68

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +    +A  AL +APTRELA Q+   L      T +   + +GG  +  + R L+ G  +
Sbjct: 69  KPEGKTA-RALILAPTRELAKQIQENLAAYTQGTHLKTMLVVGGAGITGQIRKLERGVDL 127

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +  + + +   K +VLDEAD+MLD+GF   +  I      +R+ ++FSA
Sbjct: 128 LVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLAPERQTMLFSA 187

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+   +  LA  + K+ +RV + +  +    I+     VA + + + ++ ++  H  + A
Sbjct: 188 TMPKLMAELAGAFLKNPMRVQVDAPGKPVERIEQSVHFVAKAAKTDLLLELIDKHRDERA 247

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+    +  K+LA   F   ++ G  SQ +R  A+   + G+ ++ +ATDVAARG
Sbjct: 248 IVFGRTKHGSEKLHKLLASKGFLSASIHGNKSQGQRDRAITDFKAGKVKILVATDVAARG 307

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P+++ + + +L +  EN +HR GRT RAG  GM++     +       + +     +
Sbjct: 308 LDIPEVKHIYNYDLPNVAENYVHRIGRTARAGADGMAIAFCAPDEMGELRDIQKAMKADI 367

Query: 368 V 368
            
Sbjct: 368 P 368


>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
          Length = 808

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 181/374 (48%), Gaps = 9/374 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+ I E + + G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 230 FHKYPE-ILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHID 288

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N + S    P  L +APTRELA+Q+ +E++  Y   G+      GG +   + + L +
Sbjct: 289 GQNIKKSERGGPAVLVMAPTRELALQIDKEVKK-YEYKGITAVCIYGGGNRREQIKVLTD 347

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D      L + ++  VVLDEAD MLD+GF   I  ++ S    R+ +
Sbjct: 348 GVDIVIATPGRLNDLAEAGHLEVKYVTYVVLDEADRMLDMGFEPQIRKVMYSIRPTRQTV 407

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           M SAT  P +  LA++Y  D +++ + +         + I               +    
Sbjct: 408 MTSATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIEIIPDDDQEKFRTFMNFAT 467

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               ++  I FC  +A     +  L     Q   + G+  Q +R  AL  + DG  ++ I
Sbjct: 468 NLDPSEKVIAFCGKKARADELSTELTLAGLQCQTIHGDRDQSDREQALLDIADGTVQILI 527

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358
           ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAG+ G S+    +    +A+  
Sbjct: 528 ATDVASRGLDIDDITHVINYDFPRNIEEYVHRVGRTGRAGKSGKSISYFTRGDWAQAKEL 587

Query: 359 --LFREANVSVVWE 370
             +  EA   V  E
Sbjct: 588 IAILEEAQQYVPEE 601


>gi|329900791|ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549380|gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 468

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 140/415 (33%), Positives = 211/415 (50%), Gaps = 27/415 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   + +AL+E GY+  TSVQE  +   +  +D+LVS+QTGSGKT AF L    
Sbjct: 2   TFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPALH 61

Query: 61  T-----------------------LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
                                   L         A+ P  L + PTRELA+QV    +  
Sbjct: 62  KFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDKY 121

Query: 98  YAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
            ++   + AV  +GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDE
Sbjct: 122 GSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLDE 181

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF DDIE I+ ++P+ R+ ++FSAT+   +  +AK   K+ + + IA    +H
Sbjct: 182 ADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATKH 241

Query: 217 SDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            +I  R   V   S ++  + ++LR      A+VF +T+         L    F   AL 
Sbjct: 242 ENISQRVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALH 301

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G++ Q  R+  L  MR G+ RV +ATDVAARGID+P +  V + +L   PE+ +HR GRT
Sbjct: 302 GDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 361

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           GRAGR G++V ++        +R+ R     +  E     E  +   A R  Q P
Sbjct: 362 GRAGRNGIAVSLVNHAEGINVKRIERFTKQLIPVEVIEGFEPKKTASAPRSGQKP 416


>gi|196000560|ref|XP_002110148.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
 gi|190588272|gb|EDV28314.1| hypothetical protein TRIADDRAFT_21567 [Trichoplax adhaerens]
          Length = 424

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 121/412 (29%), Positives = 214/412 (51%), Gaps = 12/412 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A     +   T +Q   +   L  KD++  A+TGSGKT AF L +   LL +  R
Sbjct: 4   EPLCQACDRLQWKQPTKIQCEAIPVALTGKDIIGLAETGSGKTAAFVLPILQALLDKPQR 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  ++E L +  GV  AV IGG+ +  +   L    HI+
Sbjct: 64  ------LFALILTPTRELAFQISEQIEALGSSIGVQCAVIIGGIDMMTQSIMLAKKPHII 117

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +GTPGRL DH+      ++  LK +V+DEAD +L++ F  +++ IL   PK+RR  +FSA
Sbjct: 118 IGTPGRLADHLANTKGFSLRPLKYLVMDEADRILNMDFEAEVDKILSVLPKERRTYLFSA 177

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D V++ ++++      +    + V    +D  +V+IL      + 
Sbjct: 178 TMTKKVKKLQRASVQDPVKIEVSTKYTTVEKLQQTYIFVPAKYKDCYLVSILNELAGNSF 237

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC+T  +  R   +L    F  + L G++SQ +R  AL   +   + + +ATDVA+RG
Sbjct: 238 MVFCATCINTQRIGLMLRNLGFNAIPLHGQMSQSKRLGALHKFKSKESSILVATDVASRG 297

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ +  S+ ++ +HR GRT RAGR G S+  + Q      +R+ +     +
Sbjct: 298 LDIPHVDIVINFDAPSHSKDYIHRVGRTARAGRSGRSIIFVTQYDVELFQRIEQLIAKKL 357

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                P+VE       +R+ +   +    + + ++ ++      D E+  A 
Sbjct: 358 PEY--PTVEEEVMLLMERVAEAQRYA---KMELQETMNKKRRPLDDEEEGAA 404


>gi|270005640|gb|EFA02088.1| hypothetical protein TcasGA2_TC007723 [Tribolium castaneum]
          Length = 447

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 204/432 (47%), Gaps = 18/432 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+   +   I    +  G  + T +Q   + P L  +D + +A+TGSGKT+AF L + 
Sbjct: 4   KSFDKLQLNPWIIRQCATIGVRSPTPIQTNCIPPILAGRDCIGAAKTGSGKTLAFALPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   +     +   V +GG+ +  + +
Sbjct: 64  QKLCEDP------YGIFALILTPTRELAFQIADQFAVIGKVMNLRHCVIVGGMDMVVQGK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           DL    HIVV TPGRL DH+      N + L+ +VLDEAD +L   F + I+ I  + PK
Sbjct: 118 DLARKPHIVVATPGRLADHLESCNTFNFNKLRFLVLDEADRLLGGHFDEQIKTIFQALPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---I 235
           +R+ L FSATI+  +  L     KD       +E      ++   VL     +D      
Sbjct: 178 ERQNLFFSATITDTLEKLKDVTGKDVFFYEAPAEVATVEQLEQNYVLCPKDVKDAYLVET 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +   R     N ++F +T  +    +  L E  F+ VAL   + QQ+R  AL   +    
Sbjct: 238 IRTYRATNDGNILIFTNTCKNCQVLSMTLNEVGFENVALHAMMKQQQRLAALAKFKSNTI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVA+RG+D+P ++LVI+  +   P+  +HR GRT RAGR G ++ ++     + 
Sbjct: 298 KILLATDVASRGLDIPTVQLVINHNIPKIPKEYIHRVGRTARAGRNGKAISLVTPYDIKL 357

Query: 356 AERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVD----VLLA 409
            + + +  N  +        E   I  + +    +  + LD     EKKM++     ++ 
Sbjct: 358 LQAIEQHINTKLTEFKLDDSEVGKIFTQISVTKSEAYIKLDEQDFYEKKMINKRKKWMME 417

Query: 410 KHDPEKIAAGFL 421
             DP++    FL
Sbjct: 418 GLDPDEEEEKFL 429


>gi|325577716|ref|ZP_08147991.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160461|gb|EGC72587.1| ATP-dependent RNA helicase RhlB [Haemophilus parainfluenzae ATCC
           33392]
          Length = 419

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 193/369 (52%), Gaps = 5/369 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL ++G+   T +Q   L   L+ KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLHPIVQKALQDKGFEYCTPIQALSLPITLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F+  S P AL +APTRELAVQ+  + E L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQPDFA-TSQPRALILAPTRELAVQINNDAELLAKTSGLRTALAYGGDGYDKQLKAI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      SP++
Sbjct: 130 EAGVDILIGTTGRVIDYVKQGIIRLDDIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQE 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA         + I  E +    I       +  D+   ++ ++
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNSPEYIEIEPEQKTGHRIKEELFYPSNEDKIPLLLTLM 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 250 EEEWPERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFADGELDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 310 ATDVAARGLHISDVTHVFNFDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 369

Query: 360 FREANVSVV 368
                 S+ 
Sbjct: 370 EEYIGHSIP 378


>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
 gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
          Length = 434

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 110/391 (28%), Positives = 195/391 (49%), Gaps = 11/391 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +A    G+     +Q   +   L+ +D++  AQTGSGKT AF + +  
Sbjct: 11  TFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGKTGAFVIPVLQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +            L IAPTRELA Q+  +   L A  GV   V +GG+    +   
Sbjct: 71  KLLEQPQ------GIFCLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDSMTQSLQ 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++G+PGR+  H+      N+  +K  ++DEAD +    F +++  IL   PK+
Sbjct: 125 LAKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNILKVIPKE 184

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + V++ +A++ +    +  + + +    ++  +V IL
Sbjct: 185 RNTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPFKYKECYLVYIL 244

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F ST AS ++ T +L       + ++G++ Q +R  +L   + G   + +
Sbjct: 245 NELAGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLASLSKFKQGTKSILV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P ++LVI+ ++ +N +  +HR GRT RAG  G ++ ++ Q      +R+
Sbjct: 305 ATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAITLVTQYDVEMYQRI 364

Query: 360 FREANVSVVWEP--APSVEAIRERDAQRILQ 388
                  +   P    +V    ER  Q + +
Sbjct: 365 EFVLKKKLDEFPCQEDTVLIFLERVTQAVRE 395


>gi|156553787|ref|XP_001602045.1| PREDICTED: similar to GH10652p [Nasonia vitripennis]
          Length = 682

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 178/364 (48%), Gaps = 7/364 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 154 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 213

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +        + V      GG     + RDL
Sbjct: 214 INNQ-PRLQRGDGPIALVLAPTRELAQQIQQVAADFGVSSQVRNTCIFGGAPKGPQARDL 272

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+
Sbjct: 273 ERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 332

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
            LM+SAT    +  LA+ +  D +++NI S     +    + V V        +   ++ 
Sbjct: 333 TLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLE 392

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R  R+ +
Sbjct: 393 EISQEAENKTIIFVETKRKVDEITRAINRYGWQAIGIHGDKSQQERDYVLNQFRSSRSAI 452

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A 
Sbjct: 453 LVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAN 512

Query: 358 RLFR 361
            L +
Sbjct: 513 DLIQ 516


>gi|119475746|ref|ZP_01616099.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
 gi|119451949|gb|EAW33182.1| probable ATP-dependent RNA helicase [marine gamma proteobacterium
           HTCC2143]
          Length = 451

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 195/372 (52%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +AL + G+   T VQ   +   L+ +D++VSAQTGSGKT AF L +   +L E 
Sbjct: 9   LHKQLLKALDKLGFSEATEVQAQAIPEALKRRDLMVSAQTGSGKTAAFLLPILHQILTEE 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L + PTRELA+Q  +  E L A T +   + IGG +   +   L+    
Sbjct: 69  VSTS---GTRVLILLPTRELALQTQKNFEMLAAFTYIKSGLIIGGEAFKHQVATLRKDPE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DHI     +   L+ +VLDEAD MLD+GF  D+  I  S   +R+ L+FS
Sbjct: 126 VLIATPGRLVDHIEKGTPDFRQLEVLVLDEADRMLDMGFAIDMNTIASSCNPERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAK 245
           A++            +D V + + S + QH DI  + VL   +  ++  +  ++    A+
Sbjct: 186 ASLKHEGLGKISKSFRDPVAIAVGSPDHQHQDICQQLVLADTIKHKEKLVEALIDEEQAQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC+TR    + + +L     +V  + G++SQ +R   +   R G   V +ATDVAA
Sbjct: 246 KTLVFCNTRVQCQQLSHLLRYKKMKVGYIHGDISQNDRKQVMNQFRQGGIAVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++LV++  ++ + ++ LHR GRTGRAG +G ++ +I  N   +   + R    
Sbjct: 306 RGLDIKGVDLVVNFNIAQSGDDHLHRVGRTGRAGEQGKAITLIDSNEWNQMSSIERYLKF 365

Query: 366 SVVWEPAPSVEA 377
                    ++A
Sbjct: 366 RFESRVVKGLKA 377


>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
 gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
          Length = 512

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 119/409 (29%), Positives = 209/409 (51%), Gaps = 11/409 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +V+ EA  + G+   T +Q   +   L+ +DV+  A+TGSGKT AF + +  +LLA   R
Sbjct: 88  EVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQR 147

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA Q+  + + L +  GV  AV +GG+ +  +   L    H+V
Sbjct: 148 ------LHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKPHVV 201

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+ RR  +FSA
Sbjct: 202 IATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFLFSA 261

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D V+ +++S+      +    + +    +D  +V+IL      + 
Sbjct: 262 TMTKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSF 321

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFC T  +  R   +L       + L G++SQ +R  AL   +     V +ATDVA+RG
Sbjct: 322 MVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLATDVASRG 381

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+       +
Sbjct: 382 LDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIGKKL 441

Query: 368 VWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPE 414
                P+ E       +R+ +   F  ++  +  EK+       + D +
Sbjct: 442 PA--FPTQEEEVMMLVERVSEAQRFARIEMKESSEKRKRPSAAQEVDED 488


>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
 gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
 gi|1174440|sp|P44701|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase srmB homolog
 gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
 gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
          Length = 439

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 186/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 415

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 193/373 (51%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L ++G+   T +QE ++   L  KDV+  AQTGSGK+ +F L L   L ++
Sbjct: 7   NLSSTLQKTLQDKGFKKPTPIQEKVIPLVLNNKDVIAQAQTGSGKSASFVLPLLQ-LWSQ 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRERRDLQN 123
               +       L + PTREL +QV    E           +   IGG S+  +  ++Q 
Sbjct: 66  KRDNAKKGKIKILVLTPTRELTLQVAEVFEEFSKDLAKKPQIVSLIGGESIGEQLYNIQQ 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++V T GR  D ++ K +N+SHL  +VLDEAD+ML+  F ++++ +L+S P KR+ L
Sbjct: 126 GCDVLVATSGRFLDVLKKKQMNLSHLNYLVLDEADKMLNFDFTEELDLVLESLPAKRQNL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT  P +  L      + +      +     +I  R + V    R   + ++L+ H 
Sbjct: 186 LFSATYPPKMLDLVSKIMSNPL-HVTIEQKPTVENIRQRVIEVDNEKRGPLLRHLLKEHK 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  +VF + + +     +   ++  +  + + +L Q  R++ LQ  ++ +  V  ATD+
Sbjct: 245 YKRVLVFMANKRATDNIAEKFRKYGIEAASFNADLEQDIRNDTLQAFKEAKINVLFATDI 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +++ +I+ +L  +P + +HR GRT RAG+ G ++  I    Q   + + + +
Sbjct: 305 AARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGEAISFINHETQEHFKLIEKRS 364

Query: 364 NVSVVWEPAPSVE 376
           ++ +  E     E
Sbjct: 365 HIKLTRESIQGFE 377


>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 462

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 115/415 (27%), Positives = 198/415 (47%), Gaps = 10/415 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + +AL+++GY   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 23  FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQH 82

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R     AP  L + PTRELA+QV ++ E L   T + +A   GGV+        
Sbjct: 83  LLDYPRR--KPGAPRVLVLTPTRELAMQVAQQAEELAQFTKLSIATITGGVAYQNHGEIF 140

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 141 NKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQ 200

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
             +FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 201 TFLFSATLEGELLVDFAERILTDPVKIDAEPSRRERKKINQWYYHADSYEHKVKLLARFI 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R  V   +++L +   +   L GE++Q +R+NA+  +++G   + +
Sbjct: 261 ADEQVSKGIVFVRRREDVRELSEILRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTLLV 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 321 ATDVAARGIDIEDISHVMNFDLPYNADTYLHRIGRTARAGKKGTAVSFVEGHDYKYLGKI 380

Query: 360 FRE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            R         ++    P  +A ++ + + + +        + +EK+      AK
Sbjct: 381 KRYTEELLKPRIIEGLEPRTKAPKDGEIKTVSKKQKAYIRQKREEKRKTTQKKAK 435


>gi|326505420|dbj|BAJ95381.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326522769|dbj|BAJ88430.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 524

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 152 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 211

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 212 IDPEK------NAIQVVILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRL 265

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++ GTPGR+ D  +     ++    +++DEAD++L   F+  +E ++   P  R+
Sbjct: 266 YQPVHLLAGTPGRILDLTKKGICMLNECSMLIMDEADKLLAPEFQPSVEQLIRYLPASRQ 325

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 326 LLLFSATFPVTVKDFKQKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 385 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 444

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 445 DLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLITYEDRFNMYRIEQ 504

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 505 ELGTEIKTIP-PQID 518


>gi|226487070|emb|CAX75400.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487074|emb|CAX75402.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
 gi|226487078|emb|CAX75404.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 768

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 184/369 (49%), Gaps = 5/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I   +++ G+   T +Q       L  +DV+  AQTGSGKT  F L     ++A+
Sbjct: 95  SVPDYILSVIAKNGWQLPTPIQSQGWPMALSGRDVVGIAQTGSGKTATFLLPAVIHIMAQ 154

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L + PTRELA QV    +       +      GG +   + R++Q G 
Sbjct: 155 -PRLLRNEGPICLVLVPTRELAQQVLSVAKEFADAASLRAICFYGGSAKGTQLREMQKGG 213

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D IR +   +S +  +VLDEAD MLD+GF   I  IL      R+ LM+
Sbjct: 214 EICIATPGRLIDFIRVQRNLLSRVTYLVLDEADRMLDMGFEPQIRKILSHVRPDRQTLMW 273

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    + TLA+ +  D ++VNI S +   + +I     ++    ++  ++ +L   G 
Sbjct: 274 SATWPKEVQTLAREFLTDYIQVNIGSVSLHANPNITQIVEIMDDWRKEQRLIELLSSFGR 333

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+    + T  L    F V A+ G   Q++R   L   + GR  + IATDVA
Sbjct: 334 SRTLVFVETKRRTDQLTNSLRRRGFYVEAMHGGKQQRDRELTLASFKSGRMNILIATDVA 393

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--- 361
           +RG+D+ ++E V++ +  +  E+ +HR GRT R+ ++G +         R+A  L     
Sbjct: 394 SRGLDIDNIEYVVNFDFPNQTEDYIHRIGRTARSDKRGTAFTFFTYKNARQARDLIEILD 453

Query: 362 EANVSVVWE 370
           EAN  +  E
Sbjct: 454 EANQEITPE 462


>gi|224031067|gb|ACN34609.1| unknown [Zea mays]
          Length = 414

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILGSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 393

Query: 358 RLFREANVSVVWEPA 372
            + +  NV +   PA
Sbjct: 394 DIQKFYNVLIEELPA 408


>gi|159469610|ref|XP_001692956.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
 gi|158277758|gb|EDP03525.1| pre-mRNA-splicing ATP-dependent RNA helicase [Chlamydomonas
           reinhardtii]
          Length = 571

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 22/388 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P ++ +A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + ++ 
Sbjct: 157 SGLPSLLLKAIEKVGYKKPSPIQMAAIPLGLKQRDVIGIAETGSGKTAAFVLPMLAYIMR 216

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +      + A  P A+ +APTRELA Q+  E   L   TG  V   +GG S+  +   L+
Sbjct: 217 QPPMNEENEADGPYAVVLAPTRELAQQIEEETHKLAHYTGYRVTSVVGGQSIEEQGTKLR 276

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK---- 178
            G  IV+ TPGRL D I      ++    VVLDEAD M+DLGF   +  +LD+ PK    
Sbjct: 277 KGCEIVIATPGRLLDCIDRHYAVLNQCNYVVLDEADRMIDLGFEPQVIGVLDAMPKSTLK 336

Query: 179 -------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                         R   MFSAT+ PA+  LAK Y +  V V I S  R   ++  R  +
Sbjct: 337 PDEEGAVLEENRTYRTTYMFSATMPPAVERLAKKYLRRPVVVVIGSAGRVTDNVTQRVFV 396

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  +++   +   L     K  IVF +T+       + + E  +    L G  +Q +R  
Sbjct: 397 VKENEKGRLLEQELNNVDEKRVIVFVNTQRQCDNVHRHMDELGYHCTILHGGKTQDQREA 456

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  RDG   V IATDVA RGID+PD+ LV++ ++ +N EN  HR GRTGRAGRKG++V
Sbjct: 457 GIKGFRDGTYNVLIATDVAGRGIDVPDVALVVNYDMPTNIENYTHRIGRTGRAGRKGIAV 516

Query: 346 FVIPQNMQ---RRAERLFREANVSVVWE 370
             +           ++L  ++  +V  E
Sbjct: 517 TFLTLGDTGVFFDLKKLLEDSKAAVPPE 544


>gi|330932532|ref|XP_003303815.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
 gi|311319958|gb|EFQ88104.1| hypothetical protein PTT_16176 [Pyrenophora teres f. teres 0-1]
          Length = 512

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 51  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L     + V V  GG  +  +   L
Sbjct: 111 VNPKSPK------TQALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S  +  V+DEAD++L   F   +E +L   PK R+
Sbjct: 165 SDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    +      +N+  E             V    + + +  +   
Sbjct: 225 VMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFNK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 284 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 344 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQ 403

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 404 ELGTEI--QPIPQV 415


>gi|189194769|ref|XP_001933723.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187979287|gb|EDU45913.1| ATP-dependent RNA helicase DHH1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 512

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 51  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  ++ +        AL + PTRELA+Q  +  + L     + V V  GG  +  +   L
Sbjct: 111 VNPKSPK------TQALILVPTRELALQTSQVCKQLGKHLNINVMVSTGGTGLKDDIIRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S  +  V+DEAD++L   F   +E +L   PK R+
Sbjct: 165 SDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    +      +N+  E             V    + + +  +   
Sbjct: 225 VMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFNK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 284 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 344 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQ 403

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 404 ELGTEI--QPIPQV 415


>gi|326523907|dbj|BAJ96964.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 192/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDY------GLVECQALILAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R    
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 359 LFREANVSVVWEPA 372
           + +  NV +   PA
Sbjct: 395 IQKFYNVVIEELPA 408


>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 415

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 196/372 (52%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A +  G+   T VQ A +   LR  DVL SAQTGSGKT AF L L   L  + 
Sbjct: 8   LSPALVQAATAMGFSAPTPVQSAAIPAVLRGADVLGSAQTGSGKTAAFALPLLQRL--QA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNG 124
           D  +      AL + PTRELA QVG  +  L         VAV  GGVS++ +   L+ G
Sbjct: 66  DAQNAPRHVRALILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFGGVSINPQMMGLRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGRL D +    L +  ++ +VLDEAD +LDLGF ++++ IL   P +R+ L+
Sbjct: 126 ADVVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVRRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +PA+  LA+    + VRV +         I  RA  V    R   + ++++ H  
Sbjct: 186 FSATFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQRRTQLLRHLVQEHQW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+ +     + L +         G LSQ  R+  LQ  +D R +V + TD+A
Sbjct: 246 SRVMVFVATQYAAEHVAEKLYKAGIFATPFHGGLSQGARTQVLQEFKDDRWQVVVTTDLA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L  + ++ +HR GRTGRAG  G++V  +    +     + +  +
Sbjct: 306 ARGIDIAQLPAVVNYDLPRSADDYVHRIGRTGRAGESGVAVSFVSAATEAHFRLIEKRQH 365

Query: 365 VSVVWEPAPSVE 376
           +S+  E  P  E
Sbjct: 366 LSLPREVVPGFE 377


>gi|76781331|gb|ABA54551.1| vasa-like protein [Monopterus albus]
          Length = 618

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +S+ GYV  T VQ+  +      +D++  AQTGSGKT +F L +
Sbjct: 191 IMTFDEAELCETLRRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPI 250

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+ +      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 251 LQQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 310

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R++  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 311 YQIREILKGCNVLCGTPGRLLDMIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGS 370

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             +      + ++  +          A   + D + + +       +D++   V V    
Sbjct: 371 PGMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGEVGGACTDVEQTFVQVTKFS 430

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + +V  L+  G +  +VF  T+         L +      ++ G+  Q ER  AL   
Sbjct: 431 KRDQLVEFLKTTGTERTMVFAETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADF 490

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 491 RSGKCLVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFDP 550

Query: 351 N----MQRRAERLFREANVSVV 368
           N    + R    +  +A   V 
Sbjct: 551 NADGQLARSLVMILSKAQQEVP 572


>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
 gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
           B565]
          Length = 416

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 1/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+E GY   T +Q   +   L  +D++  AQTG+GKT AF L L   LLA+ 
Sbjct: 11  LSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLLEQLLAQ- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELAVQV   +      TG+      GGVS+  +   L+NG  
Sbjct: 70  PQMESQRPIRALVLVPTRELAVQVAESVARYGQGTGLTSTQVYGGVSIAAQVDALKNGVD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+R   L++  L+ +V DEAD MLD+GF D+I  +L   P  R+ L+FS
Sbjct: 130 LLIATPGRLLDHLRQGALSLDSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQTLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L+K   +D   + +A  N   ++++ R   V    +   + ++L+  G   
Sbjct: 190 ATCDDNLFALSKVLLRDPELIEVAPRNTTAAEVEQRVYTVDSDRKLALVEHMLKVKGWAP 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  TR    +  + L +     +A  G+LSQ  R   L   R G  +  +ATDVAAR
Sbjct: 250 ALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEFRAGTLQALVATDVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL  VI+ E     E+ +HR GRTGRAG KG+++ +         E++    +  
Sbjct: 310 GLDITDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEKVEAVLDTR 369

Query: 367 VVWEPAPSVE 376
           +  +  P  E
Sbjct: 370 LPQQWFPGFE 379


>gi|301621509|ref|XP_002940090.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Xenopus
           (Silurana) tropicalis]
          Length = 760

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 218/447 (48%), Gaps = 13/447 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S   +   T +Q+A +   L  KD+   A TG+GKT AF L +   L+ +
Sbjct: 189 NLSRPLLKAISAMSFTQPTPIQKACIPIGLLGKDICACAATGTGKTAAFMLPVLERLIYK 248

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +P +    L + PTREL +QV      L   T V   + +GG+ V  +   L++G 
Sbjct: 249 -PREAPVT--RVLVLVPTRELGIQVHAVSRLLAQFTEVTTCLAVGGLDVKTQEAALRSGP 305

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGRL DH+      ++  ++ ++LDEAD MLD  F + ++ I+     +R+ L+
Sbjct: 306 DVLIATPGRLIDHLHNCPSFSLDSIEVLILDEADRMLDEYFEEQMKEIIRLCSHQRQTLL 365

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---RY 241
           FSAT+S  +  LA    ++ VR+ + S       +    V +  +   +           
Sbjct: 366 FSATMSEEVKDLASVSLRNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAVACALLTR 425

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+    R   +L     +V  L G LSQ +R  +L+  +D +  + +AT
Sbjct: 426 TFQDHVMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQTQRLESLRRFKDEQIDILVAT 485

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    ++ +HR GRT RAG+ G SV ++ +  ++  + + +
Sbjct: 486 DVAARGLDIDGVKTVINLTMPGTVKHYVHRVGRTARAGKAGRSVSLVGEEERKMLKEIVK 545

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +A   V     P  + +  +  ++I +    + ++   EK+  ++ +++    +I+    
Sbjct: 546 KAQAPVKARVIP--QDVISKFREKITKSEKEIYAVLQLEKEEKEMQMSE---AQISVAKK 600

Query: 422 RIHRA-GLCAPEEITPVSLVSGRDRFR 447
           ++    G  +  E +       R + +
Sbjct: 601 KLQPGKGEESHPERSWFQTKEERRKEK 627


>gi|308071203|ref|YP_003872808.1| ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
 gi|305860482|gb|ADM72270.1| Probable ATP-dependent RNA helicase [Paenibacillus polymyxa E681]
          Length = 559

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 197/372 (52%), Gaps = 10/372 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   Q   EAL E+G  + T VQ+  +   +  +DV+  A TG+GKT+AF L +
Sbjct: 11  LKNFAALGVEQHWVEALKEQGISSPTPVQQESIPLLMEGQDVIAEAHTGTGKTLAFLLPI 70

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117
              L  +         P AL IAPTRELA+Q+  E       +  + +    GG  V R+
Sbjct: 71  LQKLNLDK------RHPQALVIAPTRELALQITEEANRLAATEPSLSLLAVYGGQDVERQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ GA +++GTPGRL DH+R   L++  +K +VLDEAD+ML +GF +D+E IL   P
Sbjct: 125 LRKLKGGAQLIIGTPGRLLDHLRRGTLDLGGIKMLVLDEADQMLHMGFLNDVETILQEVP 184

Query: 178 KKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +R+ ++FSAT+   I         +       ++ +   S I    V      +  A+V
Sbjct: 185 YRRQTMLFSATMPAGIRKLARVYMNEPVDVKVKSASSVPVSQIRQVVVQTTDRGKQQALV 244

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L       A++FC T+   ++  + L E  F+   L G+LSQ +R   ++  R+ + +
Sbjct: 245 DMLNTDRPYLAVIFCRTKRRAAKLNEELQEMGFESGELHGDLSQNKREQVMKAFREAKLQ 304

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG KG++V +         
Sbjct: 305 LLVATDVAARGLDVEGVTHVFNYDMPQDAESYIHRIGRTGRAGGKGVAVTLATPRDVPEL 364

Query: 357 ERLFREANVSVV 368
             + R A V+  
Sbjct: 365 RNIQRVAGVTFT 376


>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
 gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
 gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
          Length = 399

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 189/381 (49%), Gaps = 12/381 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L 
Sbjct: 23  STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
             +              AL ++PTRELA Q+G+ ++ L     V   A+  G       +
Sbjct: 83  QAIDLRKKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
           +  ++G   V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    
Sbjct: 137 KMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
           PK  ++++ SAT++  I  + + +  D V++ +  +      I      +     + + +
Sbjct: 197 PKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTL 256

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I         ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +
Sbjct: 257 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    +
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 356 AERLFREANVSVVWEPAPSVE 376
              + +  ++ +   PA   E
Sbjct: 377 LREIEKFYSIKINPMPANFAE 397


>gi|221055405|ref|XP_002258841.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193808911|emb|CAQ39614.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 433

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L   
Sbjct: 62  FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                +          L + PTRELA+Q    ++ L     +   V  GG S+  +   L
Sbjct: 122 CNTHKNFI------QGLILVPTRELALQTSAMIKELGKHMKIQCMVTTGGTSLREDIMRL 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+ GTPGR+ D       N+S    +V+DEAD++L   F+  +E ++   PK+++
Sbjct: 176 YNVVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LM+SAT    +    + Y  DA  +N+  E             V    + + +  +   
Sbjct: 236 ILMYSATFPVTVKEFRQIYLSDAHEINLMDELTLKGI-TQYYAFVKERQKVHCLNTLFAK 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  +    +   +SQ  R+      R+G  R  +++
Sbjct: 295 LQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSS 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++  
Sbjct: 355 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITYEDRFNLYKIEL 414

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 415 ELGTEIQPIP 424


>gi|307178385|gb|EFN67130.1| Probable ATP-dependent RNA helicase DDX47 [Camponotus floridanus]
          Length = 435

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 123/404 (30%), Positives = 211/404 (52%), Gaps = 11/404 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           +  +   T +Q   +   L  KDV+  A+TGSGKT AF L +   LL    R+       
Sbjct: 19  QLKWNEPTKIQREAIPLVLEGKDVIGLAETGSGKTAAFALPILQALLENPQRY------F 72

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           AL + PTRELA Q+  + E L +  GV  AV +GG+ +H +   L+   HI++ TPGRL 
Sbjct: 73  ALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMHAQGLLLEKKPHIIIATPGRLV 132

Query: 137 DHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
           DH+      N+  +K +++DEAD +L++ F  ++  IL   P++RR L+FSAT++  +  
Sbjct: 133 DHLENTKGFNLRQIKFLIMDEADRILNMDFEVEVNKILRVMPRERRTLLFSATMTKKVQK 192

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           L +   ++ V+V ++++ +    +    + + +  +D  +V+IL      N ++FC T  
Sbjct: 193 LQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNNFMIFCGTCN 252

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
           +  R   +L    F  V L G++SQ +R  AL   R     + I+TDVA+RG+D+P +++
Sbjct: 253 NTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFRAKNRSILISTDVASRGLDIPHVDI 312

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           VI+ ++ ++ ++ +HR GRT RAGR G S+  I Q      +R+ +  +  +   P    
Sbjct: 313 VINFDIPTHSKDYIHRVGRTARAGRSGRSITFITQYDVELYQRIEQLISKQLPLYPTEEE 372

Query: 376 EAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           E +    R  +AQRI++  +          K       + D E+
Sbjct: 373 EVMLLQERVSEAQRIVKMDMKNIEENKKLGKRKRGSNNEDDTEQ 416


>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
 gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
          Length = 448

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 114/355 (32%), Positives = 182/355 (51%), Gaps = 1/355 (0%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           S+ GY   T +Q   +   L  +D++  AQTG+GKT AF L +   L A N +  P    
Sbjct: 18  SKLGYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQL-AANPQQPPRGGA 76

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L ++PTRELA Q+      L ++  + VAV  GGV    + R LQ G  ++V TPGRL
Sbjct: 77  RVLVLSPTRELASQIAESFRSLGSEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGRL 136

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            DH+     ++   +  VLDE D+MLDLGF   I  I+ + P++R+ L FSAT+   I  
Sbjct: 137 VDHLDSGVAHLGKTEFFVLDEVDQMLDLGFVKAIHRIVKTLPQRRQNLFFSATMPTEIAK 196

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           LA +  K+  +V++    +    ++ + + V    + + +V++L        I+F  T+ 
Sbjct: 197 LAADLLKNPAQVSVTPVAKTADRVEQQVLFVETHRKRDILVDLLADAKMARTIIFTRTKR 256

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
              +  + L        A+ G  SQ +R  +L   R GR R  +ATD+AARGID+  +  
Sbjct: 257 GADKVAQHLEVCGVSAAAIHGNKSQSQRERSLASFRAGRVRALVATDIAARGIDVDGVTH 316

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           V++ +L   PE  +HR GRT RAG +G+++ +     +     + R   + +  E
Sbjct: 317 VVNFDLPEVPEAYVHRIGRTARAGAEGVAISLCDGAERDLLRNIERLTRLRLPTE 371


>gi|198425852|ref|XP_002130131.1| PREDICTED: similar to p68 RNA helicase isoform 1 [Ciona
           intestinalis]
 gi|198425854|ref|XP_002130146.1| PREDICTED: similar to p68 RNA helicase isoform 2 [Ciona
           intestinalis]
          Length = 585

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 108/369 (29%), Positives = 174/369 (47%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  I   L   G+   T +Q       L  +D++  AQTGSGKT++F L     + A+
Sbjct: 120 SFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHINAQ 179

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL + PTRELA QV            +      GG S   + RDL+ G 
Sbjct: 180 -PYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERGC 238

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 239 EIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMW 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA ++ +D V + I S N   +        +    ++   ++ ++     
Sbjct: 299 SATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIMG 358

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G++ + +AT
Sbjct: 359 EAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILVAT 418

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAER 358
           DVA+RG+D+ D++ VI+ +  +  E+ +HR GRT RA + G +     Q      +    
Sbjct: 419 DVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDLIE 478

Query: 359 LFREANVSV 367
           + +EA   +
Sbjct: 479 ILKEAKQQI 487


>gi|15230945|ref|NP_188610.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative / DEAD box RNA helicase, putative [Arabidopsis
           thaliana]
 gi|109893655|sp|Q94A52|RH2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|332642762|gb|AEE76283.1| DEAD-box ATP-dependent RNA helicase 2 [Arabidopsis thaliana]
          Length = 408

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 198/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  I + +   + E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++
Sbjct: 34  ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    AL ++PTRELA Q  + ++ +     +    CIGG SV  + 
Sbjct: 94  CQVVD------TSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ + SAT+   I  +   +  + V++ +  +      I    V +     + + + +
Sbjct: 208 DLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 267

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV
Sbjct: 268 LYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRV 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 328 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILR 387

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 388 DIEQYYSTQIDEMPMNVADLI 408


>gi|88857449|ref|ZP_01132092.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
 gi|88820646|gb|EAR30458.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family protein [Pseudoalteromonas
           tunicata D2]
          Length = 435

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 194/382 (50%), Gaps = 3/382 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+ I  A+ E GY  L+ VQ   +    R  DVL +AQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPE-ILRAIDECGYTELSPVQRLAIPHVRRGHDVLANAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+        ++A  AL +APTRELA Q+    E       + VA   GGVS   +   
Sbjct: 62  KLIDTPTPRVASNA-KALVLAPTRELAEQIANSFERYGKYLDISVAAIFGGVSHKGQAIK 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I+V TPGRL +HI+   +++S++  +VLDEAD MLD+GF +DI+ ++ +   +R
Sbjct: 121 LKAGADIIVATPGRLLEHIQMCNVSLSNVSFLVLDEADRMLDMGFINDIKMLMAAVNDER 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   ++   + +  K    V    +N     + +    V    ++  +  ++ 
Sbjct: 181 QTLLFSATYPSSMKQFSASVLKQPKIVQATKDNSTAETVQHVVYPVEERRKNELLSELIG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF + + + S   + L +         G+ +Q  R  AL+  ++G+ RV +A
Sbjct: 241 RKNWHQVLVFVNMKETASSVVEELNQFGISAAVCHGDKTQGARRRALREFKEGKVRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+  LE VI+ +L    E+ +HR GRTGRAG  G +V  + +  +     + 
Sbjct: 301 TEVAARGLDIVGLERVINVDLPFLAEDYVHRIGRTGRAGNIGQAVSFVSREEEHTLANIE 360

Query: 361 REANVSVVWEPAPSVEAIRERD 382
                S+     P  E +  RD
Sbjct: 361 ALIGTSIRRIYYPGFE-VSSRD 381


>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
 gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
          Length = 462

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 204/393 (51%), Gaps = 9/393 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++     + EA    G+ N T +Q   +   L  KD++  AQTGSGKT AF L +
Sbjct: 25  VKSFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTGAFALPI 84

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  + +        A  ++PTRELA+Q+  + E L +  G+   V +GGV + ++ 
Sbjct: 85  LQALLESSQK--SVQPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVDIVQQT 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVV TPGRL DH+      ++  LK +VLDEAD +L+  F   ++ IL+  P
Sbjct: 143 LILAKRPHIVVATPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNVIP 202

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+  +FSAT++  +  L +   ++ V++  AS+      +  +   V    +D  +V 
Sbjct: 203 RDRKTYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVPSKHKDCYLVY 262

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       A+VF  T  + S    VL     + + ++G +SQ +R  AL   +     V
Sbjct: 263 ILTEMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNKFKARECNV 322

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+P +++VI+ ++ SN ++ +HR GRT RAGR G+++ ++ Q       
Sbjct: 323 LICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYL 382

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           ++       +   PA   E +    R  DA+RI
Sbjct: 383 QIENLIGKKLPEFPAQEEEVLMLLDRVIDAKRI 415


>gi|170100080|ref|XP_001881258.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643937|gb|EDR08188.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 442

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 168/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L ++D+L  A+ G+GKT AF +     
Sbjct: 30  FEDMFLRRELLMGIFEAGFEKPSPIQEEAIPIALTKRDILARAKNGTGKTAAFVIPSLQQ 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    ++        AL + PTRELA+Q  +  + L    GV V V  GG ++  +   L
Sbjct: 90  IDITKNKI------QALLLVPTRELALQTSQVCKTLGKHMGVQVMVTTGGTTLKDDILRL 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       +++     V+DEAD++L   F   +E +L   P +R+
Sbjct: 144 SESVHVLVGTPGRILDLAGKNVADLTECPVFVMDEADKLLSPEFAPVMEQLLSYLPTERQ 203

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +      +      +N+  E             V    + + +  +   
Sbjct: 204 VMLFSATFPMIVKDFKDKHMNSPYEINLMDELTLRGV-TQYYAYVEERQKVHCLNTLFSK 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 263 LQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCS 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ ++    +    ++ +
Sbjct: 323 DLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQ 382

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 383 ELGTEIQPIP 392


>gi|88797925|ref|ZP_01113512.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88779122|gb|EAR10310.1| probable ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 448

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 192/373 (51%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+ + G+   T VQ A +   L  KD+L+SA+TGSGKT A+ L     +L+E
Sbjct: 6   DLHPKLTAAIEQHGWTEPTDVQTASIPQALDGKDLLISAETGSGKTAAYLLPALHRVLSE 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P +    L + PTRELA QV ++ E L  +TG+   +  GG     +   L+   
Sbjct: 66  R---KPKAGIRVLVMVPTRELAQQVMKDCEALTQQTGLKTVIIRGGQEFQYQASLLRRNP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGR+ +H+     ++  ++ +VLDE D MLD+GFRD++  I        + L+ 
Sbjct: 123 EIVIATPGRMTEHLNKNSTDLLDVECLVLDECDRMLDMGFRDEVLAIAGQIRNDHQTLLL 182

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT     ++++AK+   DA  + I  E  Q +    R      + +   +  +L +   
Sbjct: 183 SATLKHRGVSSVAKDILNDAEFIQIKPEMLQENIRQQRIFSDGPAHKTKLVDWLLSHETF 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF  TR         L  H  +V  L GE+ Q ER+  +   RDG   V +ATD+A
Sbjct: 243 QKAIVFTKTRVQAEELANNLRLHQKRVATLHGEIEQDERNRIMTRFRDGVVDVIVATDLA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++LV++ +++ + +  +HR GRTGRAG+ G++V ++  +       + R   
Sbjct: 303 ARGLDVEGVDLVVNFDIAQSGDEHVHRVGRTGRAGQSGLAVSLVAAHDYNLMSSIERYLG 362

Query: 365 VSVVWEPAPSVEA 377
           +        S++A
Sbjct: 363 IRFEPREIDSLKA 375


>gi|239503259|ref|ZP_04662569.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB900]
          Length = 586

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 156/585 (26%), Positives = 239/585 (40%), Gaps = 37/585 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 423 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 478

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P         D  D  R      K 
Sbjct: 479 RSFGGEDR--PRREF-----NSDRPRRE-GGFNDKPRF-------DSNDDNRGNRVDYKP 523

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDG--ATKRFKRFKGASKN 573
            +    G      R  +S G + +  ++G    +  + F G  ++
Sbjct: 524 RRENGFGD-----RPQRSFGGEDRPRREGGFGDRPKRSFGGEDRS 563


>gi|229587022|ref|YP_002845523.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
 gi|228022072|gb|ACP53780.1| ATP-dependent RNA helicase RhlE [Rickettsia africae ESF-5]
          Length = 410

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 193/364 (53%), Gaps = 10/364 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPDKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 350

Query: 361 REAN 364
           R  N
Sbjct: 351 RLVN 354


>gi|169883094|gb|ABZ02207.1| VASA [Trichosurus vulpecula]
          Length = 704

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 172/372 (46%), Gaps = 13/372 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ Q +   +++ GY  LT VQ+  +   L  +D++  AQTGSGKT AF L + +
Sbjct: 267 TFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPILA 326

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ +     RF     P  + +APTREL  Q+  E       T V   V  GG  +   
Sbjct: 327 HMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYGGTQLGHS 386

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +  G +I+  TPGRL D I  + + +  ++ +VLDEAD MLD+GF  +++ ++    
Sbjct: 387 IRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPG 446

Query: 178 KKRRMLMFSATISPAITTLAKNYQK-------DAVRVNIASENRQHSDIDYRAVLVALSD 230
              +    +   S                       V +       SD+    + V    
Sbjct: 447 MPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYS 506

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +V ILR  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 507 KREKLVEILRNIGEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDF 566

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++    P
Sbjct: 567 RCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGKAISFFDP 626

Query: 350 QNMQRRAERLFR 361
           +     A+ L +
Sbjct: 627 EPDSHLAQPLVK 638


>gi|148263694|ref|YP_001230400.1| DEAD/DEAH box helicase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397194|gb|ABQ25827.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
           Rf4]
          Length = 447

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 7/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F +    +   ++  GY + T +Q   + P +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FQSF-DFHPDVAAGVTAAGYASPTPIQAQAIPPVMLGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+             AL +APTRELA Q+   +  L  +T +      GGV+++ + + 
Sbjct: 62  RLMQGKQG-----HVRALIVAPTRELAEQIHESISALGRQTRLRSITVYGGVNINPQIQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  DI  IL   PK+R
Sbjct: 117 LKSGVEIVVACPGRLLDHIGQGTIDVSRVEVLVLDEADQMFDMGFFPDIRRILKHLPKQR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA +   +               + +    V    +   ++ +LR
Sbjct: 177 QTLLFSATMPDEIRRLA-HEVLNDPVTVQVGNTAPPVTVSHALYPVEQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ +VF  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLVFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  V++ ++    E  +HR GRTGRA R G +  ++          + 
Sbjct: 296 TDIAARGIDVSQISHVVNYDIPDTAEAYVHRIGRTGRAARSGDAFTLVTSEDTAMVRAIE 355

Query: 361 REANVSVVWEPAPSVE 376
           R    S+        +
Sbjct: 356 RALKSSLERRTVEGFD 371


>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
 gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
           infestans T30-4]
          Length = 406

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   +   G+   +++Q+  + P ++ +D++  +Q+G+GKT  F +++  
Sbjct: 34  TFEAMGLKEDLLRGIYSYGFEKPSAIQQRAIKPAIQGRDLIAQSQSGTGKTAVFSISILQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L       + ++   AL ++PTRELA Q  + +  L     V    CIGG SV  + R 
Sbjct: 94  SLD------TSSNETQALVVSPTRELAEQTQKVVLALGDFMNVQCHACIGGKSVGEDIRR 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +V GTPGR+ D IR + L   ++K +V+DEADEML+ GF++ I  I    P   
Sbjct: 148 LDFGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEADEMLNKGFKEQIYDIYRYLPPST 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++L+ SAT+   +  L + +  + V+V +  +      I    V +     + + + ++ 
Sbjct: 208 QVLLVSATMPQEVLDLTRKFMNEPVKVLVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T  + E  F V A+ G++ Q+ER   +Q  R G +RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAMHGDMPQKERDAIMQEFRSGGSRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV  RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 328 TTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDDDIRILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
 gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
           3519-10]
          Length = 417

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 121/363 (33%), Positives = 185/363 (50%), Gaps = 3/363 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +AL E GY   T +Q   +   L+ +D+L +AQTG+GKT AF + +   L  +N R
Sbjct: 10  DPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQNLTEKNIR 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               +   AL + PTRELA+Q+            +   V  GGV    +   L+ G  I+
Sbjct: 70  ---NNQIKALILTPTRELAIQIEESFNAYGRHLRLRNLVVFGGVKQSGQEAALKKGVDIL 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I    +++ +L+  VLDEAD MLD+GF  D++ I+   P KR+ L FSAT
Sbjct: 127 VATPGRLLDFISQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPPKRQTLFFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               I+ LA +   + V+V +A  +     I  +   V   ++   + +IL    + + +
Sbjct: 187 FPDEISKLANSMLTNPVKVEVAPVSATADTIKQKVYFVEKENKLELLTHILMNDISDSVL 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    +  + L  H     A+ G  SQ +R NAL   + G+ R+ +ATD+AARGI
Sbjct: 247 VFSRTKHGADKIARKLQSHKISAEAIHGNKSQNQRQNALNNFKSGKTRILVATDIAARGI 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L+ V++ ELS   E  +HR GRTGRAG  G S+  +        +   +     + 
Sbjct: 307 DIDELKYVVNFELSDVSETYVHRIGRTGRAGADGSSISFVDGLDLVNLKSTEKLIGKKIP 366

Query: 369 WEP 371
            E 
Sbjct: 367 VEK 369


>gi|156547765|ref|XP_001605842.1| PREDICTED: similar to CG9748-PA [Nasonia vitripennis]
          Length = 708

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 225 ISSFDEVKLTEIIKNSINLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPI 284

Query: 59  ASTLLAENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + +        P +A       PL L +APTRELA Q+  E      ++ +  AV  GG
Sbjct: 285 LNQIYESGPPPLPPNASGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGG 344

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I  
Sbjct: 345 SNMVEQLRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRR 404

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++          + LMFSAT    I  LA+++  + + + +        +I  + V V 
Sbjct: 405 IVEQDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVE 464

Query: 228 LSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             ++ + ++++L     +        +VF  T+       + L    + V ++ G+ SQ 
Sbjct: 465 EHEKRSYLLDLLGACNFQEPTQESLTLVFVETKKGADMLEEFLHNQHYPVTSIHGDRSQH 524

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER +AL+  R G   + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  
Sbjct: 525 EREDALRRFRSGHTPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNL 584

Query: 342 GMSVFVI---PQNMQRRAERLFREANVSVV 368
           G++        QN+ R    L  EAN  + 
Sbjct: 585 GLATSFFNSKNQNLVRDLVSLLVEANQELP 614


>gi|78355388|ref|YP_386837.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217793|gb|ABB37142.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 529

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 231/475 (48%), Gaps = 16/475 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE +P  I +A +  G+ +L  VQ   +   L+ +D++V ++TGSGKT A+ L L   +
Sbjct: 41  TFEEVPDTIRQAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRI 100

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                     +   AL + PTRELA+QV  E E LY + G+ +A   GGV   ++   L+
Sbjct: 101 DPHK------NECQALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQTDALK 154

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGR+ DH+  + L +  L+ ++ DEAD ML +GF  D++ +    P++R  
Sbjct: 155 AGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPDMKEVQRYLPRRRIS 214

Query: 183 LM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT  P +  LA  +  D   ++++      +   +        ++D  +V I+  
Sbjct: 215 TYLFSATYPPHVVRLAGEFLHDPQMLSLSHSQVHITQTPHVFYECKPMEKDRVLVRIIEI 274

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +AI+FC+T+++V   T VL    +    LS +LSQ +R   L+ +R+G+ R  +AT
Sbjct: 275 ENPASAIIFCNTKSNVHYVTAVLQGFGYNADELSADLSQAKREQVLKKLRNGQVRFLVAT 334

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  V+  E   + E+ +HR+GRTGRAG  G  + ++    +    R+ +
Sbjct: 335 DVAARGIDIPDLSHVVLYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAK 394

Query: 362 EANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEK-----KMVDVLLAKHDP 413
              + +   P P+ E + +   +R   +L+  L   S    E+      MV  +    + 
Sbjct: 395 HYQIDMQMRPTPTDEDVAKVATERMTAMLEAKLRSRSPLQRERMQRFMPMVRQMAEDEEQ 454

Query: 414 EKIAAGFL-RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            K+ A  +  +++  L A            R   R   R        +       
Sbjct: 455 MKLVAMLIDELYQDSLHAAPPAPSAEEHRQRPAARPAPRTAPAPRPQQAAAGNEQ 509


>gi|319783267|ref|YP_004142743.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169155|gb|ADV12693.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 520

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 140/485 (28%), Positives = 218/485 (44%), Gaps = 22/485 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  A+++ GY   T +Q   +   L  KD+L  AQTG+GKT +F L + +
Sbjct: 2   TFADLGLSPKVLSAVTDAGYTQPTPIQAGAIPHALLGKDILGIAQTGTGKTASFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R   A  P  L + PTRELA QV            + +A+ IGGVS   + + 
Sbjct: 62  RLENGRAR---ARMPRTLILEPTRELAAQVEENFIRYGKNHKLNIALLIGGVSFDEQNKK 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL DH     L ++ ++ +V+DEAD MLD+GF  DIE I +  P  R
Sbjct: 119 LERGVDVLIATPGRLLDHRERGKLLLNGVEILVIDEADRMLDMGFIPDIERICEMIPFTR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----VALSDRDNAIV 236
           + L FSAT+ P IT L + +    VRV ++      ++I  R V               +
Sbjct: 179 QTLFFSATMPPEITKLTEKFLHAPVRVEVSKAASAATNITQRLVKSGSKPWDKRETLRNL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   KNAI+FC+ +  VS   + L ++ F   AL G++ Q+ R   L   RDG+ R
Sbjct: 239 IKAEDAELKNAIIFCNRKIEVSELFRSLLKYDFDAGALHGDMDQRARMQMLANFRDGKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+DVAARG+D+PD+  V + ++  + E+ +HR GRTGRAGR G S  +  ++  +  
Sbjct: 299 YLVASDVAARGLDIPDVSHVFNYDVPIHAEDYVHRIGRTGRAGRSGKSFTIATKSDTKYI 358

Query: 357 ERLFREANVSVVWEP--------APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           + + R     + W          +   E    R  +   +     D  +  EK       
Sbjct: 359 DAIERLIGNKIEWHDGDLSTVVASEGGEDDAPRRGKGAPRRAGRKDDDRSREKGGERKPR 418

Query: 409 AKHDP--EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD---RFRDDSRAFKVGGGSRDNF 463
            +H    E  A   +R  +           V     R    R  +  R        R   
Sbjct: 419 ERHAKRSEDTAPETVREDQPVAEVAAAAADVGERRSRKEAIRSENTERKSSDRNEQRAPE 478

Query: 464 KGSSW 468
           +G + 
Sbjct: 479 RGDTR 483


>gi|229496684|ref|ZP_04390398.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316581|gb|EEN82500.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           endodontalis ATCC 35406]
          Length = 451

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 181/381 (47%), Gaps = 14/381 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  F+ +    + + L    +   T +QEA + P L  +D+L  AQTG+GKT A+ L + 
Sbjct: 1   MNFFDFDFADEVLDGLDAMNFSEPTPIQEATIPPLLEGRDLLGCAQTGTGKTAAYLLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHR 116
           + +              A+ +APTRELA Q+ +++        +      GG       +
Sbjct: 61  NRIYLGEFE---EGYIKAIVMAPTRELAQQIDQQITGFGYFVSISSLAIYGGTDGSAWAQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            +R  + G  IVV TPGRL   +  +  +ISH    V+DEAD MLD+GF DDI  I    
Sbjct: 118 AQRGAERGTDIVVATPGRLISMLNLQAADISHTSYFVIDEADRMLDMGFYDDIMSICRHL 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI- 235
           PK  ++ +FSAT+ P I  LA++           + ++    I   A +   + +   + 
Sbjct: 178 PKTCQIALFSATMPPKIEELARSI-LKDPVHVAIAISKPPETILQSAYICYEAQKLPIVT 236

Query: 236 --VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             ++ +        +VF S++  V +    L      V  +  +L Q  R   ++  + G
Sbjct: 237 DLLSSMSEEKPTKTVVFSSSKLKVHQLATALKSRGVNVAEMHSDLDQTTREQVMRDFKTG 296

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQN 351
              V +ATD+ ARGID+ D+++VI+ ++  +PE+ +HR GRT R   GR G+++ ++ + 
Sbjct: 297 YVEVLVATDIVARGIDIDDIKVVINYDMPHDPEDYVHRIGRTARGTDGR-GVAITLVNEE 355

Query: 352 MQRRAERLFREANVSVVWEPA 372
            QR    L      S+   P 
Sbjct: 356 EQRSFAALEHFLGYSIYKVPI 376


>gi|78778139|ref|YP_394454.1| DEAD/DEAH box helicase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78498679|gb|ABB45219.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 411

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 195/388 (50%), Gaps = 4/388 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +AL + G+   T +QE ++   L   D++  AQTGSGK+ +F L +   L    
Sbjct: 8   LSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSGKSASFILPILELL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR--DLQNG 124
           D +   +    L + PTREL  Q+        A       V           +  ++Q G
Sbjct: 66  DSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFMSKKPKVVGVIGGEGIGEQLFNIQKG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V T GR  D +  K + +SH+   VLDEAD+MLD GF +++E IL++  +KR+ L+
Sbjct: 126 CDILVATSGRFLDILSKKQMILSHVDFFVLDEADKMLDFGFAEELELILEALGQKRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P +  +A    ++ + V++  E      +  RA+LV+  +R   + ++L+    
Sbjct: 186 FSATYPPKMLFIASKIMQNPIEVSVEDEEPTVESVVQRAILVSRENRAPLLRHLLKSEKY 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF S++ +         +H F   +  G+L Q++R+  L+  +  + ++  ATD+ 
Sbjct: 246 ELVIVFMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILFATDLV 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+ D+  VI+ +L  +  + +HR GRT RAG+ GM++  I    +     + + +N
Sbjct: 306 SRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFIDHEDEAHFRLIEKRSN 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF 392
           + +  E     E   E   +   ++P+ 
Sbjct: 366 IRLKREQIEGFELTTEAPKREKGKEPIK 393


>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
          Length = 660

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 112/393 (28%), Positives = 195/393 (49%), Gaps = 7/393 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P ++ E + ++ +   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 256 FHEFPDILTE-IRKQNFEKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLAFLLPALIHID 314

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L +APTRELA+Q+ +E+   Y+  G+      GG +   +   +  
Sbjct: 315 GQVTPRDKRTGPNVLVMAPTRELALQIEKEV-GKYSYHGIKAVCVYGGGNRKTQIDTVTK 373

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D ++   L++S +  ++LDEAD MLD+GF   I   L      R+ +
Sbjct: 374 GVQIVIATPGRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPNRQTV 433

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y K+ ++V + S +      +  R  +    ++ + +    +  
Sbjct: 434 MTSATWPQGVRRLAQSYMKNPIQVFVGSLDLAAVHSVTQRIYMANEDEKTDMMHQFFQEM 493

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           G ++  IVF   ++ V   +  LA       ++ G+  Q +R  AL+ ++ G  ++ +AT
Sbjct: 494 GPQDKVIVFFGKKSKVDDVSSDLALTNIDCQSIHGDRDQSDREQALEDLKTGAVQILLAT 553

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
           DVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A+    
Sbjct: 554 DVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHHAKALID 613

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +  EAN  V  E     E       ++  +DP 
Sbjct: 614 ILEEANQEVPEEIYKMAERYDAWKKKKEQEDPY 646


>gi|293610799|ref|ZP_06693099.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827143|gb|EFF85508.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 639

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 157/607 (25%), Positives = 242/607 (39%), Gaps = 43/607 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 26  KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 85

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 86  HNLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 145

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA ++V TPGRL D +  + L +  ++A+++DEAD MLDLGF +D+E I 
Sbjct: 146 PFGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 205

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  +R+ LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 206 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 265

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 266 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 325

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 326 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 385

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L    +  +       +E                                 + +
Sbjct: 386 RGKIRALEDYLDARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGRRGGGFGGGRRFEGE 445

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD---SRAFKVGGGSRDNFK--GSS 467
                    R  R      ++        G DR R +    R  + GG      +   S 
Sbjct: 446 SNFKRREGGRDDRPRRSFDDKPRGERPFGGEDRPRREFNSDRPRREGGFEDRPRREFNSD 505

Query: 468 WFSLSVGSKQK---------------AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                 G   K                + R             ++S G    +P  +F +
Sbjct: 506 RPRREGGFNDKPRFDSNDDNRGNRVDYKPRRENGF----GDRPKRSFGG-EDRPRRSFDD 560

Query: 513 VSA------DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                     G D  RR    D+    +  GG     R       + +    G   R KR
Sbjct: 561 KPRGERPSFGGEDRPRREFNSDRP---RREGGFNDKPRRSFDDKPRGERPAFGGEDRPKR 617

Query: 567 FKGASKN 573
             G    
Sbjct: 618 SFGGEDR 624


>gi|156977147|ref|YP_001448053.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
 gi|156528741|gb|ABU73826.1| hypothetical protein VIBHAR_05933 [Vibrio harveyi ATCC BAA-1116]
          Length = 421

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 198/386 (51%), Gaps = 8/386 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + + LS    V  T VQE  + P L  KD+L +AQTG+GKT AFGL +  +
Sbjct: 9   FADLGIEQQLVDTLSGMNIVTPTPVQEKSIPPVLEGKDLLAAAQTGTGKTAAFGLPIIQS 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +        AP AL + PTRELA QV   L    A T + +    GG S+  +++ L
Sbjct: 69  VQQKK----RNGAPQALILVPTRELAQQVMDNLTQYAANTDLKIVCVYGGTSIGVQKKKL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL DH+    + I+    +VLDEAD MLD+GF  D++ IL   P+ ++
Sbjct: 125 EEGADILIATPGRLLDHLFNGNVIIAKTGILVLDEADRMLDMGFWPDLQRILRRLPQDKQ 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    I T+A       V V ++  N     +      V    +   +  ++  
Sbjct: 185 TMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  T+       K L     + V+++G+ SQ  R  AL   + G+ R  IAT
Sbjct: 245 RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKAGKVRALIAT 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ +LE V++ ++    E+ +HR GRTGRA + G++V ++ ++ +     +  
Sbjct: 305 DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRARKSGLAVSLMSRDEEYLLTAIEN 364

Query: 362 EANVSVVWEPAPSVEA--IRERDAQR 385
             +  +  E     E   I E + +R
Sbjct: 365 LLDQRLPQEWLEGFEPSLIEEVEPER 390


>gi|319956997|ref|YP_004168260.1| dead/deah box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
 gi|319419401|gb|ADV46511.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
           DSM 16511]
          Length = 462

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 192/365 (52%), Gaps = 9/365 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F ++   + + +   G+   + +Q+  +   L  +D++  A TG+GKT AFGL +  
Sbjct: 3   FKDF-DLHPEVAKGVRIAGFKEPSPIQKEAIPIILEGRDLVGQAHTGTGKTAAFGLPIL- 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 DR +      AL I PTRELA QV  EL  L    G+      GGV   R+   
Sbjct: 61  ------DRIARGEIERALVITPTRELATQVSDELYHLGRFAGIRTLAVYGGVGYGRQIAL 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G  IVV TPGRL D  +   +++ + + VVLDEADEMLD+GF DD+  I +  P+ R
Sbjct: 115 IHRGVQIVVATPGRLKDLYQKGKIDVFNPEVVVLDEADEMLDMGFLDDVREIFEYIPQNR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT+   I  LA     +   +++   E  ++ DI+    ++  + RD AIV +L
Sbjct: 175 QTLLFSATMPDPIKELADTLLYEPEFISVVGEETTKNVDIEQYYYVINENQRDEAIVRLL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC  +  V R  + L    F    L G++ Q ER   ++  R G  R+ I
Sbjct: 235 ETENYDKALIFCRMKREVDRLAEELKALGFNAAGLHGDIDQMERDAIVKSFRRGETRILI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  V +  +  +P++ +HR GRTGRAG++G ++ +      R  +R+
Sbjct: 295 ATDVAARGLDIKNVTHVFNYHIPFDPQSYVHRIGRTGRAGKRGRAITLASTEEFRELQRI 354

Query: 360 FREAN 364
            +E  
Sbjct: 355 RKEVG 359


>gi|297830638|ref|XP_002883201.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329041|gb|EFH59460.1| hypothetical protein ARALYDRAFT_479492 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 408

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 198/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  I + +   + E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++
Sbjct: 34  ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    AL ++PTRELA Q  + ++ +     +    CIGG SV  + 
Sbjct: 94  CQVVD------TSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGKSVGEDI 147

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ + SAT+   I  +   +  + V++ +  +      I    V +     + + + +
Sbjct: 208 DLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 267

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   ++ +  + F V ++ G++ Q+ER   +   R G +RV
Sbjct: 268 LYDTLTITQAVIFCNTKRKVDYLSEKMRSNNFTVSSMHGDMPQKERDEIMNQFRSGESRV 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 328 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILR 387

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 388 DIEQYYSTQIDEMPMNVADLI 408


>gi|283049400|gb|ADB07168.1| DEAD-box RNA helicase-like protein [Prunus persica]
 gi|283049402|gb|ADB07169.1| DEAD-box RNA helicase-like protein [Prunus persica]
          Length = 413

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 100 QQLDYA------VVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 154 ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++
Sbjct: 214 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLYD 393

Query: 359 LFREANVSVVWEP 371
           + R  NV +   P
Sbjct: 394 IQRFYNVVIEELP 406


>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 443

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 110/406 (27%), Positives = 192/406 (47%), Gaps = 8/406 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL  
Sbjct: 11  DLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQHLLDY 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA+QV  + + L   T + +A   GGV+            
Sbjct: 71  PRR--KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIFNKNQ 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+F
Sbjct: 129 DIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+   +         +      A  +R+      +      +   +   +   +    
Sbjct: 189 SATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADSHEHKFKLLARFIEQEQ 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G  +V ++TDV
Sbjct: 249 VSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVKVLVSTDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V  +  +  R   ++ R  
Sbjct: 309 SARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKIKRYT 368

Query: 364 NV----SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                  V+    P  +A ++ + + + +        + + +K  D
Sbjct: 369 GEILKARVIEGLEPRTKAPKDGEIKTVSKKQKAKKLEKREARKKAD 414


>gi|224064015|ref|XP_002301349.1| predicted protein [Populus trichocarpa]
 gi|222843075|gb|EEE80622.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 127 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEK 186

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V    GG S+  +   L
Sbjct: 187 IDQDNNFI------QVVILVPTRELALQTSQVCKELGKHLKIQVMATTGGTSLKDDIMRL 240

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     + +   +VLDEAD++L   F+  IE ++   P  R+
Sbjct: 241 YQPVHLLVGTPGRILDLAKKGVCILKNCSMLVLDEADKLLSPEFQPSIEQLIRFLPSNRQ 300

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 301 ILMFSATFPVTVKDFKDRYLEKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 360 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 420 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 479

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 480 ELGTEIKQIPP 490


>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660682|sp|Q6CX73|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
          Length = 398

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 190/375 (50%), Gaps = 11/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   +   +   G+   +S+Q   ++  +  KDV+  AQ+G+GKT  F + L  
Sbjct: 24  TFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       S +    AL ++PTRELA Q    +  L     V    C GG ++ ++ + 
Sbjct: 84  AID------SKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSPK 178
           +     +V GTPGR+ D I+ + LN+ + K +VLDEADE+L     F+  I  I    P 
Sbjct: 138 VSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPP 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++++ SAT+S  I  + K +  D V++ +  +      I      +     + + + +
Sbjct: 198 TIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+TR  V   ++ L +  F V ++ G++ Q+ER   +   R G+ARV
Sbjct: 258 LYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ ++  N EN +HR GR+GR GRKG+++  I +  + + +
Sbjct: 318 LISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEERPKLK 377

Query: 358 RLFREANVSVVWEPA 372
            +     + +   PA
Sbjct: 378 EIESHYRIKIKPTPA 392


>gi|326534222|dbj|BAJ89461.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 414

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 192/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R    
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 359 LFREANVSVVWEPA 372
           + +  NV +   PA
Sbjct: 395 IQKFYNVVIEELPA 408


>gi|328544967|ref|YP_004305076.1| ATP-dependent RNA helicase protein [polymorphum gilvum SL003B-26A1]
 gi|326414709|gb|ADZ71772.1| ATP-dependent RNA helicase protein [Polymorphum gilvum SL003B-26A1]
          Length = 503

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 3/369 (0%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + ++++  GY   T +Q   +   L   D++  AQTG+GKT AFGL L
Sbjct: 19  LTQFEALGLSSPLLKSIAALGYEAPTPIQTDAIPHILAGHDLMGLAQTGTGKTAAFGLPL 78

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           A+ +LA  D  +P +   AL +APTREL  Q+ + L      + + VAV +GGVS+  + 
Sbjct: 79  ANRMLASADTAAPRT-TRALILAPTRELVTQIAQNLVAFVKGSPLQVAVVMGGVSIGGQI 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +    L +  +  +VLDEAD+MLDLGF   +  I    PK
Sbjct: 138 KRLARGTDILVATPGRLLDLVDRNALRLDEVGYLVLDEADQMLDLGFIHALRKIAALVPK 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA+ Y KD VRV +A   R    +D     VA +D+ + +++ 
Sbjct: 198 KRQTLLFSATMPKQIEDLARAYLKDPVRVEVAPAGRTADKVDQCVHFVAQADKTDLLISC 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       ++VF  T+    +  + L     +  A+ G  SQ +R  A++ ++ G  R+ 
Sbjct: 258 LSERAQDLSLVFARTKHGADKVVRKLVAAGLKANAIHGNKSQNQRDRAIKELKTGETRIL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P +  V + +L   PE+ +HR GRT RAG  G +V             
Sbjct: 318 VATDVAARGIDIPGVSHVYNFDLPDVPESYVHRIGRTARAGADGDAVAFCAPEEIGLLRD 377

Query: 359 LFREANVSV 367
           + +   + V
Sbjct: 378 IEKLTGLKV 386


>gi|255071997|ref|XP_002499673.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
 gi|226514935|gb|ACO60931.1| hypothetical protein MICPUN_106753 [Micromonas sp. RCC299]
          Length = 413

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 195/380 (51%), Gaps = 9/380 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDSMNLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCAGVL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E +         AL +APTRELA Q+ + +  L     V    C+GG SV  ++R
Sbjct: 100 QQLDYEKEE------CQALVLAPTRELAQQIEKVMRALGDYLNVKCHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ+G H+VVGTPGR+ D +R + L   ++K   LDEADEML  GF+D I  I    P K
Sbjct: 154 ILQSGVHVVVGTPGRVYDMLRRRALKPDYIKIFSLDEADEMLSRGFKDQIYDIFQLLPSK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 214 LQVGVFSATMPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFANTRRKVDWLTDKMRARDFTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + 
Sbjct: 334 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERLLQD 393

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + R     +   P+   + I
Sbjct: 394 VQRFYQTVIEELPSNVADLI 413


>gi|198452778|ref|XP_001358938.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
 gi|198132073|gb|EAL28081.2| GA10214 [Drosophila pseudoobscura pseudoobscura]
          Length = 738

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 178/370 (48%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 303 LPEYVTKEIRRQGYKEPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIVHINNQQ 362

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 363 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 421

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +   G N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 422 IVIATPGRLIDFLSSGGTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 481

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 482 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYDT 541

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 542 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 601

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 602 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 661

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 662 DVLREANQEI 671


>gi|256273812|gb|EEU08734.1| Dbp2p [Saccharomyces cerevisiae JAY291]
          Length = 547

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 188/380 (49%), Gaps = 11/380 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ 
Sbjct: 172 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G+ IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA +Y  D ++V + S     +   + I          DR N 
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 295 ARVCIATDVAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + + +ATDVAARGI ++  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  +
Sbjct: 411 SPIMVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 470

Query: 354 ---RRAERLFREANVSVVWE 370
               +   + REAN ++  E
Sbjct: 471 GLGAKLISIMREANQNIPPE 490


>gi|195452372|ref|XP_002073325.1| GK14071 [Drosophila willistoni]
 gi|194169410|gb|EDW84311.1| GK14071 [Drosophila willistoni]
          Length = 802

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 186/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF L +
Sbjct: 295 ITSFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLLPI 354

Query: 59  ASTLLAENDRFSP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P            PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 355 LNQMYEHGISSPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 414

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 415 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 474

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 475 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 534

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 535 VYEQDKRSYLLDLLSSIRDGPEYCKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 594

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 595 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 654

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 655 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 687


>gi|146308743|ref|YP_001189208.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145576944|gb|ABP86476.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 447

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L+E  Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRTLTELDYQTPTPVQSQAIPAMLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQ 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + ++A  AL + PTRELA QV +  +       +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNAVRALVLVPTRELAEQVLQSFQAYGQHLPLSSYAVYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + L+ +VLDEAD MLDLGF  +++ +  + PK+R+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQNAVKFAQLQTLVLDEADRMLDLGFARELDELFSALPKRRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +D V V ++  N     +    + V    +    +++L+       +
Sbjct: 189 FSDVIRQMAGELLRDPVSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQEKRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L        ++ G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFAKTRKGVDQLEQELLAMGVSADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L  N E+ +HR GRTGRAG  G +V ++  +       + R     + 
Sbjct: 309 DIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAVSLVCADEVELLAAIERLIRQVLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RREEP 373


>gi|49072840|gb|AAT51707.1| DEAD box RNA helicase [Choristoneura fumiferana]
          Length = 1012

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 109/419 (26%), Positives = 203/419 (48%), Gaps = 11/419 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L +  +   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L ++     
Sbjct: 363 MDILKKLNFEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHVLDQSP-LED 421

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTREL +Q+G+++       G+ V    GG  +  +  +L+ GA I+V T
Sbjct: 422 TDGPISLIMTPTRELCMQIGKDIRKFAKSLGLRVVCVYGGTGISEQIAELKRGAEIIVCT 481

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 482 PGRMIDMLAANSGRVTNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIRPDRQTVMFSAT 541

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR-YHGAKNA 247
               +  LA+   +  + + +   +    D++    ++    +   ++ +L  Y    + 
Sbjct: 542 FPRQMEALARRILQKPIEIQVGGRSVVCKDVEQHVAILEDDAKFFKLLELLGLYSQLGSI 601

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     K L +  +  ++L G + Q +R + +   ++G+ ++ +AT VAARG
Sbjct: 602 IVFVDKQENADSLLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAARG 661

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R A  + R   +S 
Sbjct: 662 LDVKQLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRYAGDVLRAMELSG 721

Query: 368 VWEPA------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              P        S +  +E+D +++     F       ++        K   +K A G 
Sbjct: 722 AVVPPTLRALWDSYKDAQEKDGKKVHTGGGFSGKGFKFDESEAQAATEKKKYQKAALGL 780


>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
 gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
          Length = 439

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 186/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 399

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 189/380 (49%), Gaps = 12/380 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L  
Sbjct: 24  TFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERR 119
            +              AL ++PTRELA Q+G+ ++ L     V   A+  G       ++
Sbjct: 84  AIDLRKKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKK 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSP 177
             ++G   V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    P
Sbjct: 138 MQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLP 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIV 236
           K  ++++ SAT++  I  + + +  D V++ +  +      I      +     + + + 
Sbjct: 198 KNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLC 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I         ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +R
Sbjct: 258 DIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSR 317

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    + 
Sbjct: 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377

Query: 357 ERLFREANVSVVWEPAPSVE 376
             + +  ++ +   PA   E
Sbjct: 378 REIEKFYSIKINPMPANFAE 397


>gi|254495452|ref|ZP_05108376.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85819807|gb|EAQ40964.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 411

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 5/375 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F +IP  + I +A++E  +   T VQE  +   L +K+V+V+AQTG+GKT AF L + + 
Sbjct: 3   FSDIPLNKSIQKAIAEARFHKPTLVQEKTIPLVLDKKNVIVAAQTGTGKTAAFALPIINL 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + D         AL I PTRELA+Q+    +     + +      GGVS+  ++  L
Sbjct: 63  LFDKQDAEKGEKKIKALVITPTRELAIQILENFKSYSKYSNLRSTAVFGGVSLEPQKEIL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D      +++S L+  VLDEAD MLD+GF +DI+ I    P+K++
Sbjct: 123 AKGVDILVATPGRLIDLQMQGNIDLSQLEIFVLDEADLMLDMGFINDIKKIEKLCPRKKQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSATI   I  L+K+  K+A +V+I  E     +I      +   ++ +  +++LR 
Sbjct: 183 TLLFSATIPEKIDELSKSIVKNATKVDINPEETTAKNIGQLLYYLPKKNKTDLCLHLLRN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V +  + L ++ + V ++ G+ +Q  R+ A++  +  +A + IAT
Sbjct: 243 TINGKIIIFRRTKFAVDKLEQTLIKNGYNVASIHGDKTQGVRNKAIEDFKSKKASILIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AER 358
           DVAARGID+ +++ +I+ ++ + PE  +HR GRTGRAG+ G++      +        E 
Sbjct: 303 DVAARGIDITNVDAIINFDIPNVPEIYVHRIGRTGRAGKSGIAFSFCSPDENNYIASIEN 362

Query: 359 LFREANVSVVWEPAP 373
           L  ++   +   P P
Sbjct: 363 LIEKSIKVIEDHPYP 377


>gi|325273395|ref|ZP_08139652.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324101468|gb|EGB99057.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 426

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L L + L+   
Sbjct: 20  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLK 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     +L + PTRELA Q  ++++     T +   +  GG     +   L+    
Sbjct: 80  GG---RVEIRSLILLPTRELAQQTLKQVQLFSQFTYIKAGLVTGGEDFKEQAAMLRKVPD 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL + +    L++SH++ ++LDEAD MLD+GF +D+E +      + + L+FS
Sbjct: 137 VLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCKECENREQTLLFS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A                + +   Q                 ++  +  +L     
Sbjct: 197 ATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLANETF 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +TRA   R    L     +   L GE  Q++R  A++  + G ++V +ATDVA
Sbjct: 257 DKAIVFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLAIERFKQGSSKVLVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 317 ARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLITHNDWNLMSSIERYLK 376

Query: 365 VSVVWEPAPSVE 376
                     V+
Sbjct: 377 QQFERRVIKEVK 388


>gi|157375528|ref|YP_001474128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317902|gb|ABV37000.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 462

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 192/370 (51%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+SE GY+  T +Q   +   L+ K+++ +AQTGSGKT  F L +   L    
Sbjct: 8   LSAPILNAISELGYLTPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPILEMLARSE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL + PTRELAVQV + +E       +      GGV    +++ L +G  
Sbjct: 68  TQRKKRA--RALILTPTRELAVQVCKSIEVYGKNLNLKSIAIYGGVDYAPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D+ P++R+ L+FS
Sbjct: 126 IVVATPGRLRDLYTQRAIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +A++++   E     +ID   + V    +   + +++  +  + 
Sbjct: 186 ATLSRQVRELAKDTVSNAIQLSFNKERAGKPNIDQWLITVDKDKKSALLSHLINENNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+    +    L +   +   +    +Q  R   L   + G+ +  I+T V+AR
Sbjct: 246 ALIFIETKHGAGKLVSQLEKRGIEAECIHSGRTQAIREKILADFKTGKIKYLISTGVSAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++  +    + R  +  
Sbjct: 306 GIDIDVLPLVINYDLPFPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCMIERRLDHL 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 IERKVVEGFE 375


>gi|47209111|emb|CAF90069.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 415

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 198/381 (51%), Gaps = 5/381 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 35  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 94

Query: 61  TLLAE--NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L  +             AL +APTRELA Q+ + L  L     V    CIGG +V  + 
Sbjct: 95  CLDIQVSGSTLVQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDI 154

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P 
Sbjct: 155 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 214

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 215 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 274

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV
Sbjct: 275 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 334

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 335 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 394

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 395 DIEQYYSTQIDEMPMNVADLI 415


>gi|320530074|ref|ZP_08031144.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
 gi|320137507|gb|EFW29419.1| DEAD/DEAH box helicase [Selenomonas artemidis F0399]
          Length = 423

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 125/396 (31%), Positives = 207/396 (52%), Gaps = 14/396 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  I   + +   L  RG    T VQE  +      +DV+  AQTG+GKT+AF L +
Sbjct: 1   MMPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRAGRDVIAQAQTGTGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +           AL IAPTRELA+Q+ R  E L A   +   +  GG  + R++
Sbjct: 61  LEKIKPQGA------VVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +V+GTPGRL DH+R   L +  +  VVLDEADEML LGF +D+E +L  + +
Sbjct: 115 EKLRRHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L K +  +  R+ I  E+    +I+  A+ V   ++ + +   
Sbjct: 175 DYQLALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCAS 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC+T+         LA   + V ALSG L+Q +R+  L+  R  + ++ 
Sbjct: 235 INEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++      +  +
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRK 354

Query: 359 L-----FREANVSVVWEPAPSVEAIR-ERDAQRILQ 388
           +      R A  +V  +P P+ +  + +++ +R++Q
Sbjct: 355 IESALKERLARAAVKKKPRPAPQKAQPDKEGRRVVQ 390


>gi|224285398|gb|ACN40422.1| unknown [Picea sitchensis]
          Length = 428

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 38  ETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCQGLDVIQQAQSGTGKTATFCSGIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L     V V  C+GG S+  + R
Sbjct: 98  QQLNYNVPE------CQALVLAPTRELAQQIEKVMRALGDYLQVRVHACVGGTSIREDLR 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P  
Sbjct: 152 ILQAGVHVVVGTPGRVYDMLRRRALRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPTN 211

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +  + VR+ +  +      I      +     + + + ++
Sbjct: 212 LQVGVFSATMPPEALEITRKFMTNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 272 YETLAITQSVIFINTRRKVDWLTDQMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  + 
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQD 391

Query: 359 LFREANVSVVWEP 371
           + R  NV +   P
Sbjct: 392 IQRFYNVVIEELP 404


>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 442

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 199/375 (53%), Gaps = 5/375 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+ +     +  A    G+ N T +Q   +   L  KD++  AQTGSGKT AF L +
Sbjct: 8   VKTFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKTGAFALPI 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +LL  +++     A  A  ++PTRELA+Q+  + E L +  GV  AV +GGV + ++ 
Sbjct: 68  LQSLLEASEK--SVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVDMVQQS 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVV TPGRL DH+      ++  LK +VLDEAD +L+  F   ++ IL   P
Sbjct: 126 IALGKRPHIVVATPGRLVDHLSNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILKVIP 185

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++RR  +FSAT++  +  L +   ++ V++  AS+      +      +    +D  +V 
Sbjct: 186 RERRTFLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTLKQEYRFIPAKYKDCYLVY 245

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       ++VF  T  + +    VL     + + ++G ++Q +R  AL   + G   +
Sbjct: 246 ILTEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALNKFKAGECNI 305

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+P +++VI+ ++ +N ++ +HR GRT RAGR G+++ ++ Q       
Sbjct: 306 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFI 365

Query: 358 RLFREANVSVVWEPA 372
           ++ +     +   PA
Sbjct: 366 QIEKLIGKKLPEYPA 380


>gi|168034811|ref|XP_001769905.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|168034871|ref|XP_001769935.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678811|gb|EDQ65265.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678841|gb|EDQ65295.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 582

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 189/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +   I + ++   Y   T +Q   L   L  +D+L  A+TGSGKT AF L +
Sbjct: 134 IESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPM 193

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               LA+         PLAL +APTRELA Q+ +E++       G   A+ +GG +++ +
Sbjct: 194 IQHCLAQPP-IRRGDGPLALVLAPTRELAQQIEKEVKAFCRSAEGFRTAIVVGGTNIYEQ 252

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  IVV TPGR  DH++    ++S +  VVLDEAD MLD+GF   I  ++ S P
Sbjct: 253 RSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLP 312

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR------ 231
           KK + L+FSAT+   I  LA+ Y  + +RV +   +   +++      +   ++      
Sbjct: 313 KKHQTLLFSATMPEEIEALAQEYLDNPIRVKVGRVSSPTANVTQNLEKITEKEKIESLLA 372

Query: 232 ---DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
              D    ++         IVF   +A     T  L E   +  AL G  SQ ER  AL+
Sbjct: 373 LLVDEHSQSLDTNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALR 432

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +    
Sbjct: 433 DFRKGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFY 492

Query: 349 PQNMQRRAERLFR 361
            +       ++ R
Sbjct: 493 TERDMFLVAQIRR 505


>gi|37676305|ref|NP_936701.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus YJ016]
 gi|37200846|dbj|BAC96671.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 459

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L   
Sbjct: 9   SLKPELLSTLDSLGYTEMTPIQAQSLPLVLDGKDVIGQGKTGSGKTATFALGLLSNLNVS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D++P +R+ L+
Sbjct: 123 AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I T+A    ++   V + S +++ +       L +  +RDNA+  +L  H  
Sbjct: 183 FSATFPEQIETIASKVMQNPEMVKVESTHQKSTIEQRFYQLESTEERDNALEALLLTHRP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     
Sbjct: 303 ARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMG 362

Query: 365 VSVVWEPAPSVE 376
           + V     P  E
Sbjct: 363 IDVHPAKLPQPE 374



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
             +  +       +  G KQK  A  ++  L + +GI+ + IG I + P +++V +    
Sbjct: 375 NPKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLIGKINILPMVSYVAIDNSV 434

Query: 518 VDLLRRTVKLDK 529
             +  + ++  K
Sbjct: 435 AKIAEQQLQNGK 446


>gi|332020362|gb|EGI60783.1| Putative ATP-dependent RNA helicase me31b [Acromyrmex echinatior]
          Length = 444

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 179/390 (45%), Gaps = 12/390 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 57  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQ 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 117 VDPRKDVI------QALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRI 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +     N+ H K +VLDEAD++L   F+  ++ ++   P +R+
Sbjct: 171 YQKVQVIIATPGRILDLMEKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 231 ILLYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  +++Q  R+      R G  R  +++
Sbjct: 290 LQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSS 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 350 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQ 409

Query: 362 EANVSVVWEP---APSVEAIRERDAQRILQ 388
           E    +   P    PS+   R  D   + +
Sbjct: 410 ELGTEIKPIPKVIDPSLYVARPEDNNSMEE 439


>gi|62638007|gb|AAX92639.1| Vasa protein [Monopterus albus]
          Length = 450

 Score =  193 bits (490), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 181/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +S+ GYV  T VQ+  +      +D++  AQTGSGKT +F L +
Sbjct: 23  IMTFDEAELCETLRRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTASFLLPI 82

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+ +      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 83  LQQLMVDGVAASCFSELQEPEAIIVAPTRELINQIYLEARKFAFGTCVRPVVVYGGVSTG 142

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R++  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 143 YQIREILKGCNVLCGTPGRLLDMIGRAKVGLSKLRYLVLDEADRMLDMGFEPDMRRLVGS 202

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             +      + ++  +          A   + D + + +       +D++   V V    
Sbjct: 203 PGMPPKENHQTLMFSATFPEDIQRMAADFLKTDYLFLAVGVVGGACTDVEQTFVQVTKFS 262

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++  L+  G +  +VF  T+         L +      ++ G+  Q ER  AL   
Sbjct: 263 KRDQLLEFLKTTGTERTMVFVETKRQADFIALFLCQEKVPTTSIHGDREQPEREKALADF 322

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 323 RSGKCPVLVATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFDP 382

Query: 351 N----MQRRAERLFREANVSVV 368
           N    + R    +  +A   V 
Sbjct: 383 NADGQLARSLVMILSKAQQEVP 404


>gi|153834507|ref|ZP_01987174.1| RhlE [Vibrio harveyi HY01]
 gi|148869093|gb|EDL68132.1| RhlE [Vibrio harveyi HY01]
          Length = 411

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 189/376 (50%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   LR ++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSAPITDAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L +G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-------QRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++        + R   L
Sbjct: 306 GIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +      +P P
Sbjct: 366 LERVEIEGFAPRKPVP 381


>gi|15225898|ref|NP_182105.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861901|sp|Q94BV4|RH6_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 6
 gi|3386613|gb|AAC28543.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255510|gb|AEC10604.1| DEAD-box ATP-dependent RNA helicase 6 [Arabidopsis thaliana]
          Length = 528

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  EN+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 216 IDPENNVI------QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL 269

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L + F+  IE ++   P+ R+
Sbjct: 270 YQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQ 329

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    + +    Y K    +N+  +             V    + + +  +   
Sbjct: 330 ILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 388

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 389 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 448

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 449 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 508

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P PS+
Sbjct: 509 ELGTEI--KPIPSL 520


>gi|14532476|gb|AAK63966.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
 gi|27363412|gb|AAO11625.1| At2g45810/F4I18.21 [Arabidopsis thaliana]
          Length = 528

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 156 FEDYLLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  EN+         A+ + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 216 IDPENNVI------QAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRL 269

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L + F+  IE ++   P+ R+
Sbjct: 270 YQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQ 329

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    + +    Y K    +N+  +             V    + + +  +   
Sbjct: 330 ILMFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGV-TQYYAFVEERQKVHCLNTLFSK 388

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 389 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCT 448

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G++V ++    + +  +  +
Sbjct: 449 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 508

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P PS+
Sbjct: 509 ELGTEI--KPIPSL 520


>gi|295104399|emb|CBL01943.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 126/355 (35%), Positives = 195/355 (54%), Gaps = 7/355 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
            + I +A+   G+  +T +QE  +   L   DV+  A TG+GKT AFG+ +   +  EN 
Sbjct: 9   SEAIHKAVERMGFAEMTEIQEKTIPLMLAGHDVIAKAPTGTGKTCAFGIPVVEHIQPEN- 67

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAH 126
                  P A+ +APTRELA Q+  EL  L      V  A   GG ++ ++ + L  G  
Sbjct: 68  -----KYPQAVIMAPTRELAQQIAEELTNLTYFMPEVQVACVYGGANMEKQAKRLAEGCQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH +   ++ISH+  +VLDEADEML++GF  D+  I++    ++ + MFS
Sbjct: 123 IVVATPGRLMDHYKHHSIDISHVTQIVLDEADEMLNMGFYKDVRHIIEMMKARKALSMFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATIS  +  +   YQ +A  + +         I    +  +  ++ + +  I+   G K 
Sbjct: 183 ATISREVMDIGWLYQHNAEEITVQPREESQPKITQYMLETSGRNKLSDLAQIIIGEGYKR 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ + +     LA   F V  L G+LSQ+ER+  +Q  RDG+  + +ATDVAAR
Sbjct: 243 VMVFCDTKFNTATLANQLARLGFSVDCLHGDLSQKERNQIMQAFRDGKLAILVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+ D++ VI+ ++ S  E+  HR GRTGRA ++G+S        ++R + L R
Sbjct: 303 GIDVSDVDAVINYDVPSENEHYTHRIGRTGRAKKEGVSYLFYVPEEKKRVQELLR 357


>gi|293391525|ref|ZP_06635859.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952059|gb|EFE02178.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 443

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 110/412 (26%), Positives = 193/412 (46%), Gaps = 8/412 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL  
Sbjct: 11  DLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQHLLDY 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA+QV  + + L   T + +A   GGV+            
Sbjct: 71  PRR--KPGAPRVLVLTPTRELAMQVAEQAKELACFTKLSIATITGGVAYQNHGEIFNKNQ 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+F
Sbjct: 129 DIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+   +         +      A  +R+      +      +   +   +   +    
Sbjct: 189 SATLEGDLLEDFAARTLNEPVKIEAEPSRRERKKIQQWYYHADSHEHKFKLLARFIEQEQ 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V ++TDV
Sbjct: 249 VSKGIVFVRRREEVRELAENLRKRGIRSAYLEGEMAQTQRNNAIDKLKNGVVTVLVSTDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V  +  +  R   ++ R  
Sbjct: 309 SARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKIKRYT 368

Query: 364 NV----SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                  V+    P  +A ++ + + + +        + + +K  D  + + 
Sbjct: 369 GELLKARVIEGLEPRTKAPKDGEIKTVSKKQKAKKLEKREARKKADKKVKQR 420


>gi|225442221|ref|XP_002277703.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 413

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 9/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  
Sbjct: 41  TFDSMGLVENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R 
Sbjct: 101 QLDYS------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVRVHACVGGTSVREDQRI 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K 
Sbjct: 155 LQTGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKV 214

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLY 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    +
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 394

Query: 360 FREANVSVVWEP 371
            R  NV +   P
Sbjct: 395 QRFYNVVIEELP 406


>gi|117620037|ref|YP_857223.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561444|gb|ABK38392.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 408

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 187/367 (50%), Gaps = 1/367 (0%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ+  +    R +DVL SAQTG+GKT AF L +   L+       P++A   L + P
Sbjct: 1   MTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQRLVDNPAPVQPSNA-RVLILTP 59

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA QV   +        +      GG     + R L+ GAHI+V TPGRL +H+   
Sbjct: 60  TRELAAQVASNINDFAKHLDITTLTIYGGGKQDVQARKLKAGAHIIVATPGRLLEHLTAC 119

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            L++S ++ +VLDEAD +LD+GF  D++ IL +  K R+ L+FSAT S A+  LA     
Sbjct: 120 NLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKTRQNLLFSATFSEAVKKLANLMLD 179

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
               V++  +N     + +    V    +   +  ++        +VF STR S      
Sbjct: 180 KPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGKQNWPQVLVFASTRESCDELVA 239

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L     +   + G+ +Q  R  AL+   +G+ RV +AT+VAARG+D+PDLE V++ +L 
Sbjct: 240 ELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLVATEVAARGLDIPDLEYVVNYDLP 299

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
              E+ +HR GRTGRAG+ GM++  + +  +R    +       +     P  E     +
Sbjct: 300 FLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEIEALIGQKIRRIMVPGYEVSSRDE 359

Query: 383 AQRILQD 389
             + LQ+
Sbjct: 360 LIKQLQE 366


>gi|326673881|ref|XP_003200020.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like, partial
           [Danio rerio]
          Length = 477

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 114/383 (29%), Positives = 193/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F     PQ I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 35  IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 94

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  F     P  L I P+RELA Q    +E+            +  A+CIG
Sbjct: 95  IMFCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEYYCKLLEDEGAPQMRCALCIG 154

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D +  K +++   + + LDEAD M+D+GF +DI 
Sbjct: 155 GMSVKEQMEVVKHGVHMMVATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIR 214

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 215 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEA 274

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 275 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 333

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           ++G+  V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I  
Sbjct: 334 KEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINK 393

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 394 GCDESVLMDLKALLVEAKQKVPP 416


>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
 gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
          Length = 577

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 187/382 (48%), Gaps = 15/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +P+ +   L E+G  + T +Q   L   L  +D++  A TGSGKT+AF L L
Sbjct: 141 IRSFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPL 200

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E +  R      P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 201 IMLALEEEEKSRLKGGEGPVGLILCPSRELAKQTLDVIEEFVSVVNSSRCCHLRAMLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  +   ++ G HIVV T GRL D +  K +N+   K + LDEAD + D GF DDI 
Sbjct: 261 GTDMRSQLEAIRRGVHIVVATTGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            ++D    +R+ L+FSAT+   I   A+      V VN+A       D+  +   V    
Sbjct: 321 KVMDHLKFQRQTLLFSATMPRKIQEFARGALVKPVVVNVARAGAASLDVVQQVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++           ++FC ++  V    + L     +VV++ G   Q+ER +A+   
Sbjct: 381 KMVYLLEC-LQQTPPPVLIFCESKGDVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR  V +ATDVA++G+D P ++ VI+ ++ S  EN +HR GRTGR G+ G++   I  
Sbjct: 440 KQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINS 499

Query: 351 NMQR----RAERLFREANVSVV 368
                     + L REA   V 
Sbjct: 500 KQSESTLLDLKYLLREAKQKVP 521


>gi|261188573|ref|XP_002620701.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239593185|gb|EEQ75766.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
 gi|239613245|gb|EEQ90232.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ER-3]
 gi|327357431|gb|EGE86288.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 507

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 48  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 108 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 162 NEAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 222 VMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 280

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 281 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 340

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 400

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 401 ELGTEIQPIP 410


>gi|224052974|ref|XP_002297644.1| predicted protein [Populus trichocarpa]
 gi|222844902|gb|EEE82449.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 197/391 (50%), Gaps = 23/391 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 120 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLTGRDLMACAQTGSGKTAAFCFPI 179

Query: 59  ASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            S ++   D       R +    PLAL ++PTREL++Q+  E +    +TGV V V  GG
Sbjct: 180 ISGIMKMQDQSAQRPLRGARTVYPLALILSPTRELSMQIHEEAKKFSYQTGVKVVVAYGG 239

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             +H++ R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  
Sbjct: 240 APIHQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRK 299

Query: 172 ILDSSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++            ++FSAT    I  LA ++    V + +         I  R   V 
Sbjct: 300 IVEQMDMPPPGSRQTMLFSATFPKEIQRLASDFLASYVFLAVGRVGSSTDLIAQRVEFVQ 359

Query: 228 LSDRDNAIVNILRYHGA-------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            SD+ + ++++L    A          +VF  T+         L  + F   ++ G+ SQ
Sbjct: 360 ESDKRSHLMDLLYAQRANGVQGKQDLTLVFVETKKGADSLEHWLCINNFPATSIHGDRSQ 419

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           QER  AL+  + G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+
Sbjct: 420 QEREQALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGK 479

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G++     +   +M R    L +EAN  V 
Sbjct: 480 SGLATAFFNEGNASMARPLSELMQEANQEVP 510


>gi|226532852|ref|NP_001150170.1| ATP-dependent RNA helicase dhh1 [Zea mays]
 gi|195637296|gb|ACG38116.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 503

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 171/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 131 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 190

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  EN      +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 191 IDPEN------NAIQVVILVPTRELALQTSQVCKELGKYLNIEVMVSTGGTSLKDDIMRL 244

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 245 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQ 304

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 305 LLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 363

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 364 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 423

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 424 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQ 483

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 484 ELGTEIKTIP-PQID 497


>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
          Length = 426

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   DLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRERRDL 121
           +    P  A  A+ +APTRELA Q+ ++++        V AV + G    ++  +++R L
Sbjct: 64  SKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   +
Sbjct: 124 EMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+ P I TLAK   KD   V   + +R    I   A +     +   + ++   
Sbjct: 184 TIMFSATMPPKIRTLAKTILKDPEEV-KIAISRPPESIMQTAYICYDPQKLKILQDLFTQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F S++  V      L    F V A+  +L Q +R   ++  + G   + +AT
Sbjct: 243 SRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DV ARGID+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+ 
Sbjct: 303 DVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIE 362

Query: 361 REANVSVVWEPA 372
                 V   P 
Sbjct: 363 DFLEKEVYKIPV 374


>gi|26991447|ref|NP_746872.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida KT2440]
 gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
           KT2440]
          Length = 443

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    + +   ++LR    K  +
Sbjct: 189 FSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  +    +      ++ 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVLTRQTLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|224048550|ref|XP_002190979.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Taeniopygia guttata]
          Length = 729

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 183/392 (46%), Gaps = 7/392 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FE+ P  I  ++ + G+   T +Q       L+  D++  AQTG+GKT+A+ +     L
Sbjct: 329 VFEHYPD-IMASIRKVGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHL 387

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            ++         P  L +APTRELA+QV  E      K G+      GG     +   + 
Sbjct: 388 TSQPISKDQRGGPGMLVLAPTRELALQVEAECSKYAYK-GIKSICVYGGGDRKGQIDMVT 446

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D      +N+  +  +VLDEAD MLD+GF   I  IL      R+ 
Sbjct: 447 KGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQT 506

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +M SAT    +  LAK+Y K+ + V + + +        + V+V   ++  A ++     
Sbjct: 507 VMTSATWPDGVRRLAKSYLKNPMIVYVGTLDLAAVSTVQQKVIVIPEEKKRAFMHSFIKS 566

Query: 243 GA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F   + +              V +L G   Q +R  AL   + G+ R+ +A
Sbjct: 567 MKPKDKVIIFVGKKLTADDLASDFGIQGIPVQSLHGNREQCDREQALDDFKKGKVRILVA 626

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--- 357
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G +V ++  N  R A    
Sbjct: 627 TDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGEAVTLVTSNDWRFASELI 686

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
            +   AN  V  E     E  ++   ++ ++ 
Sbjct: 687 DILERANQVVPDELIAMAERYKQSQMRKEIEK 718


>gi|71065641|ref|YP_264368.1| ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter arcticus
           273-4]
 gi|71038626|gb|AAZ18934.1| possible ATP-dependent DEAD/DEAH box RNA-helicase [Psychrobacter
           arcticus 273-4]
          Length = 567

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 122/372 (32%), Positives = 198/372 (53%), Gaps = 6/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I  AL   GY + T +Q   +   L+ +D+L+SAQTGSGKT AF + +   L   
Sbjct: 50  NIAKPILSALERSGYTHPTPIQAEAIPFALQGRDLLLSAQTGSGKTAAFVIPVLDRL--- 106

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           +   S      AL + PTRELA QV   +         +  V  +GG   + +   L+ G
Sbjct: 107 SRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQITALKKG 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI    +++S L+ +VLDEAD MLD+GF DDI  IL ++P  R+ +M
Sbjct: 167 VQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPIDRQTIM 226

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT    +  +A ++ K+  RV+I  E+    +            ++  +  I+ +   
Sbjct: 227 CSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKV--YYCDDFDHKNRLLDKIVCHKDM 284

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+ S  +  K L E   +   L G+L Q +R+  +Q +R+G+ ++ +ATDVA
Sbjct: 285 EQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKCKILVATDVA 344

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L  VI+ +L    E+ +HR GR GRAGR G+++ +   + + +   + R  +
Sbjct: 345 ARGLDVPALSHVINYDLPRQTEDYVHRIGRCGRAGRTGVAISLCSMDDRPQLNAINRYLD 404

Query: 365 VSVVWEPAPSVE 376
             +       +E
Sbjct: 405 RKMEASVIEGME 416


>gi|42522929|ref|NP_968309.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574125|emb|CAE79302.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 656

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 140/477 (29%), Positives = 219/477 (45%), Gaps = 40/477 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           +  FE+  +   +  A+++ G+   T +Q   L   L    D +  A TG+GKT AFG+ 
Sbjct: 43  VDNFESFGLSAPVMAAMADMGFTTPTPIQRQALPILLAGANDFIGLASTGTGKTAAFGIP 102

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       S      AL ++PTRELA+QV  +L  L  K GV V    GG S   +
Sbjct: 103 LIENID------STVKDTQALVLSPTRELALQVAEQLTLLGKKKGVRVVTIYGGASYRTQ 156

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              ++ GAHIVV TPGRL D +  K + +  +K VVLDEADEML +GF++ +E IL ++ 
Sbjct: 157 IDGIKRGAHIVVATPGRLVDFLEQKMIKLQSVKTVVLDEADEMLSMGFKEALETILSATQ 216

Query: 178 KK--------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                      R  +FSAT+S  +  L   Y ++   V++         I+     V  S
Sbjct: 217 PDDSDSVRAACRTWLFSATMSSEVRRLTSTYLENPETVSVNKVGGTADTIEQVYYTVKNS 276

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   I  +L+       I+FC T+  V+    VL +  F   +L G+ SQQER   L+ 
Sbjct: 277 YKTEVIGRLLQTLPEFYGIIFCQTKMEVAELADVLTQRGFPADSLHGDKSQQEREATLKK 336

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  + +V +ATDVAARG+D+ DL  V++  L  + E+ +HR GRTGR G+KG ++ ++ 
Sbjct: 337 FKQRQVKVIVATDVAARGLDIKDLTHVVNHSLPWDSESYVHRIGRTGRNGQKGTAITLVN 396

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP---------------LFLD 394
                   R+ +     +     PS + +     + ++                  L  D
Sbjct: 397 PEQLTLLRRVMQNTKAVLTKGVIPSADEVAGLKIKDVMDKVTSMDPEAVQLQLASDLIQD 456

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGF--------LRIHRAGLCAPEEITPVSLVSGR 443
            IQ ++    ++   +     IAA F        L +   G   P E+ P      R
Sbjct: 457 LIQAEDINFKELSKEELLARFIAAYFPNVFVKKDLMLDYMGDRVPRELLPRDPNDNR 513


>gi|157964817|ref|YP_001499641.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
 gi|157844593|gb|ABV85094.1| ATP-dependent RNA helicase RhlE [Rickettsia massiliae MTU5]
          Length = 415

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 125/408 (30%), Positives = 207/408 (50%), Gaps = 13/408 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 6   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 65  SFI--------KNKTTALILVPTRELATQIHSTLNKVTISYKINSAVLIGGEPMPKQFMQ 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 117 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +  +    
Sbjct: 177 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSE-LTKQL 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 236 GNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 296 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWHAID 355

Query: 361 R--EANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           R      S +     S +  R+R   +R   D    +S     K+  D
Sbjct: 356 RLVNKGESTLRSEFRSDKNNRKRSFGKRAGGDGKKFNSFDSSRKRTFD 403


>gi|149184420|ref|ZP_01862738.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831740|gb|EDL50173.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/340 (32%), Positives = 184/340 (54%), Gaps = 3/340 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ E GY   T +Q   + P L  KD++  AQTG+GKT +F L +   + +  
Sbjct: 8   LSEDLLKAVEEAGYTEPTPIQAQAIPPILMMKDIIGIAQTGTGKTASFVLPMIDVMASGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L +APTRELA QV    E       + +A+ IGGV +  + + L  G  
Sbjct: 68  RR---ALMPRSLILAPTRELAAQVAENFEKYGKNHDLKLALLIGGVQMGDQIKALNEGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIEFI    P++R+ ++FS
Sbjct: 125 VLIATPGRLMDLFERGKILLNGCELLVIDEADRMLDMGFIPDIEFICSKLPEQRQTMLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LAK +  +  R+ ++     + DI    + V    +   +  +LR    + 
Sbjct: 185 ATMPPPIEKLAKKFLDNPKRIEVSRAATTNKDITAFKIPVESRKKRETLRWLLRNDHVET 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F + + +V    K L +H F    + G++ Q  R   L   ++G   + +A+DVAAR
Sbjct: 245 AIIFANRKTTVRELNKSLQQHGFASSEIHGDMDQSSRIKELDRFKNGEVNILVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           G+D+  +  V + +   +P++ +HR GRTGRAG KG +  
Sbjct: 305 GLDVKGVSHVFNFDTPWHPDDYVHRIGRTGRAGAKGRAFT 344


>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 439

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/399 (28%), Positives = 186/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++GY   T++Q   +   + E DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +    +            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----------ANVSVVWEPAP--SVEAIRERDAQRI 386
            R           A +    +P     V+++ ++   RI
Sbjct: 364 KRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|326498121|dbj|BAJ94923.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326527983|dbj|BAJ89043.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 495

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 123 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 182

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 183 IDQDK------NAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRL 236

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +++DEAD++L   F+  +E ++   P  R+
Sbjct: 237 YQPVHLIVGTPGRVLDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPSSRQ 296

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 297 ILMFSATFPVTVKAFKDKYLPKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 355

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 356 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 415

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 416 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 475

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 476 ELGTEIKPIP-PQID 489


>gi|312070734|ref|XP_003138283.1| ATP-dependent RNA helicase DHH1 [Loa loa]
 gi|307766556|gb|EFO25790.1| ATP-dependent RNA helicase DHH1 [Loa loa]
          Length = 432

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA ++  L  +D+L  A+ G+GKT A+ +     
Sbjct: 39  FEDFCLKRPLLMGIFEKGWEKPSPIQEASISIALSGQDILARAKNGTGKTGAYCIPCIDK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E         P +L I PTRELA Q       L     + V V  GG  +  +   L
Sbjct: 99  VDVEK------KYPQSLIIVPTRELAFQTSNICVDLSKHMNLKVMVTTGGTELRNDIMRL 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D +     ++SH   +VLDEAD++L   F+  ++ ++   P  R+
Sbjct: 153 NGTVHIIVATPGRILDLMDKNVADMSHCTTLVLDEADKLLSQDFQGILDRVIKFLPPDRQ 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    + T  + + ++   +N+  E             V    + + +  + R 
Sbjct: 213 IMLYSATFPLTVATFMQKHMRNPYEINLMEELTLVGV-TQYYAYVQEKQKVHCLNTLFRK 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++Q  R+      R G  R  + +
Sbjct: 272 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQGHRNRVFHDFRKGACRNLVCS 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+  
Sbjct: 332 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRIEA 391

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 392 ELRTRIAPIP 401


>gi|283851662|ref|ZP_06368941.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
 gi|283572992|gb|EFC20973.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
          Length = 492

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 128/478 (26%), Positives = 200/478 (41%), Gaps = 8/478 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E +   GY N T +Q   +      +D++  AQTG+GKT AF L +   L+   
Sbjct: 8   LHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIHRLMTTK 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      AL +APTRELA Q+ R    L   T +  AV  GGV +  + R L+ G  
Sbjct: 68  ---SEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V  PGRL DH+    +    L+ +VLDEAD M D+GF  DI+ IL + P +R+ L+FS
Sbjct: 125 IIVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI +   +                 S +++    ++ + +   ++++L   G ++
Sbjct: 185 ATMPPAI-SGLAHETLTDPVTVRIGHMAPLSTVEHAIYPISHTQKAPLLLHLLEEAGKQS 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+         L     +   L G LSQ++R  A+   R G  +V +ATD+AAR
Sbjct: 244 VIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVATDIAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ ++    E   HR GRTGRA  +G +   +          +       
Sbjct: 304 GIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIESHMKKP 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI--H 424
           +        E       +     P +    +                   A    R    
Sbjct: 364 LPRREVEGFEPDPSEFRRSYAPAPRYPARGRQGGYGGRPQQGGYRGQGDRARSSDRPQGE 423

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV--GSKQKAE 480
           R+    P+   P    +  D   +  R  +          G S F LS   G +Q  +
Sbjct: 424 RSFSERPQGDRPRDDRARPDTRTERPRQERPQAARSHGNDGRSTFGLSREQGDRQGGQ 481


>gi|218887342|ref|YP_002436663.1| DEAD/DEAH box helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758296|gb|ACL09195.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 990

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 220/450 (48%), Gaps = 15/450 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
              N+P ++ EA +  G+ NL  VQ   L     ++D++V ++TGSGKT AF L L   L
Sbjct: 112 TLANLPPMMQEAAARAGWTNLMPVQTHALPYIFAKRDLMVQSRTGSGKTGAFLLPLLERL 171

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +        A  AL + PTRELA+QV  E   L+  TG+ VA   GGV   ++   L+
Sbjct: 172 SPDEP------AVQALILVPTRELALQVEYEARVLFEGTGLNVAAVYGGVGYGKQMDALR 225

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GAH+VVGTPGR+ DH+  + +N+  ++A+V DEAD ML +GF  D++ I    PK+R  
Sbjct: 226 DGAHLVVGTPGRVLDHLLRRTMNLDRIRALVFDEADRMLSIGFYPDMKEIQRYLPKRRIS 285

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRY 241
               +   P              R+   S  + H              D+D A+V I+  
Sbjct: 286 AYLFSATYPPHVLNLAGEFLSEPRMLSLSHQQVHVAQTQHLYCETKPMDKDRALVRIIES 345

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC+T+A+V   T VL    +    LS +L+Q +R   L  +R G  R  +AT
Sbjct: 346 ENPTAAIIFCNTKANVHYVTAVLQGFGYNADELSADLTQAKREQVLGSLRKGGVRFLVAT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+PDL  VI  E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ +
Sbjct: 406 DVAARGIDIPDLSHVILYEPPEDRESYIHRAGRTGRAGSAGTVISLVDIIQKLELQRIAK 465

Query: 362 EANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKH---DPEK 415
              + +   P P  E++      R   +L+  L   +    E++     LA+    D E+
Sbjct: 466 HYKIDIQHRPTPDDESVARIAGDRLTALLEARLRARTGLERERQQRFAPLARALAGDDEQ 525

Query: 416 IA--AGFLRIHRAGLCAPEEITPVSLVSGR 443
           +A  A  L  +           P +  + R
Sbjct: 526 LALLAMLLDQYYQESLHAAPPMPATAPAPR 555


>gi|320527000|ref|ZP_08028189.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
 gi|320132585|gb|EFW25126.1| putative ATP-dependent RNA helicase RhlE [Solobacterium moorei
           F0204]
          Length = 459

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 184/378 (48%), Gaps = 5/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I  A+++  Y   + +QE  +   L  KD++  AQTG+GKT AF L + + L  +
Sbjct: 7   ELKEPILSAVNKAKYETPSPIQEKAIPVMLEGKDIVACAQTGTGKTAAFALPILNKLEYK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELAVQ+    +       +      GG     +R+ L++G 
Sbjct: 67  KKH-----QIRALVLTPTRELAVQIFENFKKFGRYLKLRACCVYGGAPSGPQRKALRSGC 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +    + +S ++  VLDEAD MLD+GF  D+  I    P+ R+ +MF
Sbjct: 122 DILIATPGRLNDFMVQGEIILSDIEVFVLDEADRMLDMGFIGDVRTIASRIPEARQTVMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA     D V + +A        I    V    +D+   + ++L      
Sbjct: 182 SATMPKEIKELANELLHDPVDIRVAPPASPAETITQYLVYCEKADKKRLLKDMLVSPEVT 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+    R TK L E   +V+ + G+ +Q +R NALQ  R  +  V +ATDVAA
Sbjct: 242 KAIVFTRTKIGADRLTKKLIEDGIKVLTIHGDKTQGQRQNALQRFRTNQVDVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  V + +L    E+ +HR GR GRAG++G+S+ +           + +    
Sbjct: 302 RGIDISGISHVFNYDLPEEDESYIHRIGRAGRAGKEGISISLCCHEELGLLASIEKMLKK 361

Query: 366 SVVWEPAPSVEAIRERDA 383
            +          ++ + A
Sbjct: 362 EIPLIRTEYSIELKRKKA 379


>gi|1183961|emb|CAA93395.1| RNA elicase [Saccharomyces cerevisiae]
          Length = 547

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 188/380 (49%), Gaps = 11/380 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +   G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E       + +      GGV   ++ 
Sbjct: 172 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G+ IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA +Y  D ++V + S     +   + I          DR N 
Sbjct: 291 DRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNK 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           ++F ST+      TK L E  +  +A+ G+  Q+ER   LQ  R+GR
Sbjct: 351 YLETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGR 410

Query: 295 ARVCIATDVAARGI-DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           + + +ATDVAARGI ++  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +  +
Sbjct: 411 SPIMVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNK 470

Query: 354 ---RRAERLFREANVSVVWE 370
               +   + REAN ++  E
Sbjct: 471 GLGAKLISIMREANQNIPPE 490


>gi|114794876|pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|114794877|pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
           A Resolution
 gi|116668327|pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
           A Resolution
          Length = 410

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 98  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 152 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 212 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 272 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 392 EQYYSTQIDEMPMNVADLI 410


>gi|300855475|ref|YP_003780459.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300435590|gb|ADK15357.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 369

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/367 (30%), Positives = 186/367 (50%), Gaps = 6/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I   L   G    T +Q+  +      KDV+  AQTG+GKT+AF L +   +   
Sbjct: 7   ELSENIINELKHMGITKPTPIQQESIKFIREGKDVIAEAQTGTGKTLAFLLPIFENISPN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  ++  AL + PTRELA+Q+  E   L     + +    GG  +  + + L+   
Sbjct: 67  ------INSTQALIVTPTRELAIQITEEALKLKKAKDINILAAYGGKDIGSQLKKLKRNI 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+++ TPGRL DH+  K +++S LK +VLDEAD+ML +GF++D+E I+    KKR+ L F
Sbjct: 121 HLIIATPGRLLDHLHRKTIDLSKLKTLVLDEADQMLLMGFKNDVEDIIKEVSKKRQTLCF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  LA  Y  D + V+I  E    ++I    +      + +A+ NI+      
Sbjct: 181 SATMNSDVKKLAYRYMTDPLVVSIKKEKVTLNNIKQYVIETTDRKKQDALCNIIDQDNPF 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T+  V      L +  +    L  ++ Q +R   ++  R+   +  IATDVAA
Sbjct: 241 MAIIFCRTKRRVDDLEIALYQRGYNCKKLHSDIPQSKRERIMKSFRNADIQYLIATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  + + ++  N E+ +HR GRTGRAG +G +   +    +R  E + R    
Sbjct: 301 RGLDISGVTHIYNYDIPENVESYIHRIGRTGRAGEEGCTCLFVDPKDKRTLEEIERGIKF 360

Query: 366 SVVWEPA 372
            +     
Sbjct: 361 RIPRREL 367


>gi|167375363|ref|XP_001733609.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165905196|gb|EDR30262.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 117/402 (29%), Positives = 216/402 (53%), Gaps = 16/402 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+++   P+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +
Sbjct: 9   KTFKDLGLIPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPM 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRE 117
              LL   ++     A   + I PTRELA QV   L+ +      ++  + +GG+ V ++
Sbjct: 68  IQHLLNVKEK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
              L    H++VGTPGR+  HI+       +I  +K +V+DEAD++L++ F ++I+++++
Sbjct: 125 SIQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIE 184

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDN 233
             P +R  ++FSAT+S  +  L +      V++    +  Q  D        +    RD 
Sbjct: 185 KLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRDG 244

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +++IL+    K+ I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G
Sbjct: 245 YLLSILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSG 304

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q   
Sbjct: 305 KRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSI 364

Query: 354 RRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPL 391
              +R+       +        EAI    +  DA RI+   L
Sbjct: 365 ELYQRIETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406


>gi|115444241|ref|NP_001045900.1| Os02g0150100 [Oryza sativa Japonica Group]
 gi|113535431|dbj|BAF07814.1| Os02g0150100 [Oryza sativa Japonica Group]
          Length = 460

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 194/388 (50%), Gaps = 13/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 22  LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 81

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 82  MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 142 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 202 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 262 LQKTPPP-VLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 321 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 380

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD 382
             + L +EA   +    A   + + + +
Sbjct: 381 DLKHLLKEAKQRIPPVLAELNDPLEDEE 408


>gi|215482158|ref|YP_002324340.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332868649|ref|ZP_08438296.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
 gi|213986281|gb|ACJ56580.1| Cold-shock DEAD box protein A(ATP-dependent RNA helicasedeaD)
           [Acinetobacter baumannii AB307-0294]
 gi|332733221|gb|EGJ64416.1| DEAD/DEAH box helicase [Acinetobacter baumannii 6013113]
          Length = 586

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 156/584 (26%), Positives = 238/584 (40%), Gaps = 37/584 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 363 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 422

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 423 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 478

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P         D  D  R      K 
Sbjct: 479 RSFGGEDR--PRREF-----NSDRPRRE-GGFNDKPRF-------DSNDDNRGNRVDYKP 523

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDG--ATKRFKRFKGASK 572
            +    G      R  +S G + +  ++G    +  + F G  +
Sbjct: 524 RRENGFGD-----RPQRSFGGEDRPRREGGFGDRPKRSFGGEDR 562


>gi|66825831|ref|XP_646270.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|74897412|sp|Q55D61|IF4A_DICDI RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
           Full=ATP-dependent RNA helicase tifA
 gi|60474009|gb|EAL71946.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 405

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   G+   +++Q+  + P ++ +D +  AQ+G+GKT  F +    
Sbjct: 33  TFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQ 92

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +           +P  L ++PTRELA Q+ +    L     + V  C+GG ++  + + 
Sbjct: 93  CVEVN------VRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKK 146

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G HIV GTPGR+ D I  K L   H+K ++LDEADEML LGF+  I  +    P   
Sbjct: 147 LETGVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGT 206

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           ++++ SAT++  + ++ + +    VR+ +  +      I      +     +   + +I 
Sbjct: 207 QIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIY 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V + T+ + +  F V ++ G++ Q+ER   ++  R G  RV I
Sbjct: 267 DSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLI 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L  + EN +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 327 TTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRILRDI 386

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 387 EQFYSTQIDEMPV 399


>gi|323698575|ref|ZP_08110487.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. ND132]
 gi|323458507|gb|EGB14372.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           ND132]
          Length = 645

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 144/578 (24%), Positives = 252/578 (43%), Gaps = 55/578 (9%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F+N+P+ + +A    G+  L  VQE  +   L  +DV+V A+TGSGKT AF L L   L
Sbjct: 23  TFDNLPEKLRQACDRAGWDRLMPVQERAIPFLLDNQDVMVQARTGSGKTGAFVLPLMEKL 82

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL + PTRELA QV +E   L      VVAV  GGV    +    +
Sbjct: 83  DPSRH------TCQALVMVPTRELAKQVAQEARTLAGDNLRVVAV-YGGVGYKEQLDAFR 135

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKRR 181
            GA++VVGTPGR+ DH+  + L +  L+ V+ DEAD ML +GF  D +E           
Sbjct: 136 EGANLVVGTPGRILDHLMRRNLTLDDLRVVIFDEADRMLSVGFYPDMVEVKRYLPRNIDG 195

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT  P++  LA+ +      ++++S+    S I ++ V V    ++  ++ ++  
Sbjct: 196 AYMFSATFPPSVLRLAEEFMVKPEFLSLSSDEENVSAIAHQFVEVPAMGKERKLIKLIEL 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A++FC+T+ +V     +L++  F    L+ +L+Q +R   +  +++G+ R  +AT
Sbjct: 256 ENPTSALIFCNTKRNVEFTAALLSQFGFDAEGLTSDLTQNKREALMARIKEGKLRFLVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+P+L  V   E   +PE+ +HR+GRTGRAG  G ++ ++    +   ER+  
Sbjct: 316 DVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAITLVDVIQRIELERIAA 375

Query: 362 EANVSVVWEPAPSVEAIR----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
              +       P+ E +     ER    + +    L ++Q +       +   +   + +
Sbjct: 376 RFKIQFEEIKDPTDEDVTAIIGERLTAMLEKKFRKLTNLQKERVSRFLPVAKTYAEHEDS 435

Query: 418 AGFLRIHRAGLCAP----EEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
              L +    L  P    +   P +    +   + +  A K GG +R + + S       
Sbjct: 436 LALLAMLLDELYQPTLHGKPAAPDTASEAQREPQRERPARKRGGRNRRSDEPS------- 488

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G +++A                                   A+  D   +  K       
Sbjct: 489 GERRQARPA-------------------------------PAETADEPSQA-KPRPSEGR 516

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
           +     +P          + +  ++   +  +  + + 
Sbjct: 517 QPREDRQPREDRQPREDRQPREEREPEARPGEAEQPSP 554


>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
 gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
           HTCC2255]
          Length = 531

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 192/369 (52%), Gaps = 1/369 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL   GY   T +Q   +   L  KD++  AQTG+GKT AF L L   LL   
Sbjct: 110 LDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLIQQLLMNP 169

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 SA  A+ ++PTRELA+Q+         +  +     IGG  + ++ RDL  G  
Sbjct: 170 IAIKGRSA-RAIILSPTRELALQIHEAFVSFGKRLPLNFTHAIGGAPIRKQMRDLSKGVD 228

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  KGL +   K +VLDEAD+MLD+GF   ++ I+    K R+ L+FS
Sbjct: 229 ILVATPGRLEDLVDQKGLRLDETKFLVLDEADQMLDIGFLPAVKRIISKVNKDRQTLLFS 288

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  L + Y  D V+V++  EN     I+   + ++  ++  A+  I+  +  K 
Sbjct: 289 ATMSKEIKKLTETYLTDPVQVSVTPENSTVDKIEQSLMHLSKQNKGLALQRIISANPKKR 348

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+    +  K L        A+ G  SQ +R  AL   + G+  + IATD+AAR
Sbjct: 349 VIVFSRTKHGSDKLVKWLGTQNIGADAIHGNKSQGQRQRALDDFKKGKTYILIATDIAAR 408

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +E+VI+ +L + PE+ +HR GRT RAG  G ++     +  ++   + +   + 
Sbjct: 409 GIDIPGIEIVINFDLPNVPESYVHRIGRTARAGADGKAIAFCAPDEHKQLWDIEKVIKMD 468

Query: 367 VVWEPAPSV 375
           +       +
Sbjct: 469 IPVVEMEGL 477


>gi|60652753|gb|AAX29071.1| DEAD box polypeptide 48 [synthetic construct]
          Length = 412

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|2500516|sp|Q40470|IF4A7_TOBAC RecName: Full=Eukaryotic initiation factor 4A-7; Short=eIF-4A-7;
           AltName: Full=ATP-dependent RNA helicase eIF4A-7
 gi|485949|emb|CAA55738.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H
Sbjct: 106 -----LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  ++     I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQRFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|328779158|ref|XP_001122489.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
           mellifera]
          Length = 616

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 180/364 (49%), Gaps = 7/364 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 112 FEEGGFPDYVLNEIHRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R +    P+AL +APTRELA Q+ +        + V      GG     + RDL
Sbjct: 172 INHQ-PRLNRNDGPIALILAPTRELAQQIQQVASDFGISSQVRNTCIFGGAPKGPQARDL 230

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+
Sbjct: 231 ERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQ 290

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
            LM+SAT    +  LA+ +  D +++NI S     +    + V V        +   ++ 
Sbjct: 291 TLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLE 350

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ +
Sbjct: 351 EISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAI 410

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A 
Sbjct: 411 LVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAS 470

Query: 358 RLFR 361
            L +
Sbjct: 471 DLIQ 474


>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida F1]
 gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 443

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    + +   ++LR    K  +
Sbjct: 189 FSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKADLFCHLLRKQRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  +    +      ++ 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVLTRQTLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|195498992|ref|XP_002096759.1| GE25850 [Drosophila yakuba]
 gi|194182860|gb|EDW96471.1| GE25850 [Drosophila yakuba]
          Length = 688

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 187/375 (49%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 271 QCFAEYPDLLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 329

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+   +      GG     +  DL
Sbjct: 330 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKK-YSFRNMKAVCVYGGGDRRMQISDL 388

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++   +++S +  +VLDEAD MLD+GF   I  ++      R+
Sbjct: 389 ERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 448

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NI 238
            +M SAT  P +  LA++Y K+ ++V + S +   +    + + +   DR+        +
Sbjct: 449 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDREKFSTIKSFV 508

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+FC  +A     +  L    F    + G   Q +R  A+  ++ G   + 
Sbjct: 509 RNMSNTDKIIIFCGRKARADDLSSDLTLDGFMTQCIHGNRDQSDREQAIADIKSGAVHIL 568

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I +     A+ 
Sbjct: 569 VATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAKE 628

Query: 359 L---FREANVSVVWE 370
           L    +EA   V  E
Sbjct: 629 LIDILQEAEQEVPDE 643


>gi|157828874|ref|YP_001495116.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801355|gb|ABV76608.1| ATP-dependent RNA helicase RhlE [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 410

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 209/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GHREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 350

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D    ++     K+  D
Sbjct: 351 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFD 398


>gi|71020299|ref|XP_760380.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
 gi|74700904|sp|Q4P6N0|HAS1_USTMA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46100049|gb|EAK85282.1| hypothetical protein UM04233.1 [Ustilago maydis 521]
          Length = 517

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 191/417 (45%), Gaps = 9/417 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A+   G+  +T VQ   + P +  KDVL +AQTGSGKT++F +     L   
Sbjct: 56  DLSEPTRKAIDAMGFKTMTEVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEML--H 113

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +   A+ I+PTRELA+Q+    + L A       + +GG +   E   LQ G 
Sbjct: 114 RLKFKPRNGTGAIIISPTRELALQIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGV 173

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++       S+LKA+ +DEAD +L++GF D++  I+   P   R  M
Sbjct: 174 NLIVATPGRLLDHLQNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILPNDNRQSM 233

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENR----QHSDIDYRAVLVALSDRDNAIVNILR 240
             +                   + I           S ++   V+     R   +   L+
Sbjct: 234 LFSATQTTKVQDLARISLRPGPLYINVHADLAASTVSRLEQGYVVCESDRRFLLLFTFLK 293

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV   + +L      V+ L G+  QQ+R+N      +      + 
Sbjct: 294 KNAGKKIIVFMSSCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYCNAPCGTLLC 353

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG  G S+  +         R  
Sbjct: 354 TDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLFLLPTELGFL-RFL 412

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + A V +     PS + A  +   ++++    +L     D  +        +  ++I
Sbjct: 413 KVAKVPLNEYTFPSDKVANVQGQLEKLISKNYYLHQSARDGYRSYLQAYGSYSLKRI 469


>gi|148906006|gb|ABR16163.1| unknown [Picea sitchensis]
          Length = 477

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 173/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 105 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 164

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +       ++   L + PTRELA+Q  +  + L     + + V  GG S+  +   L
Sbjct: 165 IDPKK------NSIQVLLLVPTRELALQTSQVCKELAKHLKIQIMVTTGGTSLKDDIMRL 218

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+V TPGR+ D  +    N+     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 219 YQPVHILVATPGRVLDLTKKGVCNLKDCAMLVMDEADKLLSPEFQPLVEQLIGFLPENRQ 278

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    + +    Y +    +N+  E             V    + + +  +   
Sbjct: 279 ILLYSATFPVTVKSFKDKYLRKPYVINLMDELTLKGI-TQFYAFVEERQKVHCLNTLFSK 337

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + +
Sbjct: 338 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVCS 397

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    ++ +
Sbjct: 398 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQ 457

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P P ++ 
Sbjct: 458 ELGTEIQQIP-PQIDQ 472


>gi|3775985|emb|CAA09195.1| RNA helicase [Arabidopsis thaliana]
 gi|9294443|dbj|BAB02563.1| RNA helicase [Arabidopsis thaliana]
          Length = 391

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 198/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  I + +   + E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++
Sbjct: 17  ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    AL ++PTRELA Q  + ++ +     +    CIGG SV  + 
Sbjct: 77  CQVVD------TSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 131 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ + SAT+   I  +   +  + V++ +  +      I    V +     + + + +
Sbjct: 191 DLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV
Sbjct: 251 LYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRV 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 311 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILR 370

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 371 DIEQYYSTQIDEMPMNVADLI 391


>gi|307168696|gb|EFN61728.1| Putative ATP-dependent RNA helicase me31b [Camponotus floridanus]
          Length = 443

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 179/390 (45%), Gaps = 12/390 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 56  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQ 115

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    +         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 116 VDPRREVI------QALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRI 169

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +     N+ H K +VLDEAD++L   F+  ++ ++   P +R+
Sbjct: 170 YQKVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 230 ILLYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 288

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  +++Q  R+      R G  R  +++
Sbjct: 289 LQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSS 348

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 349 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQ 408

Query: 362 EANVSVVWEP---APSVEAIRERDAQRILQ 388
           E    +   P    PS+   R  D   + +
Sbjct: 409 ELGTEIKPIPKVIDPSLYVARPEDNNSMEE 438


>gi|169632326|ref|YP_001706062.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii SDF]
 gi|169151118|emb|CAO99784.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii]
          Length = 619

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 159/599 (26%), Positives = 244/599 (40%), Gaps = 44/599 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 7   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 67  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 127 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 187 DLAVNRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 246

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 247 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTARNRRLRSIRE 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 307 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 366

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +EA       R            G              
Sbjct: 367 RGKIRALEDYLEARLNVSEIEGLEASPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 426

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWFS 470
                  F R        P           R  F  + R  +     R   +G       
Sbjct: 427 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRPK 482

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
            S G + +   R        +S   R+  G    +P  +F      G D  RR    D+ 
Sbjct: 483 RSFGGEDR--PRREF-----NSDRPRRE-GGFEDRPKRSF-----GGEDRPRREFNSDRP 529

Query: 531 IQLKYLG------------GEKPDFRGYKSSGFKSKNSQ----DGATKRFKRFKGASKN 573
            +                 G + D++  + +GF  +  +    +   +R   F    K 
Sbjct: 530 RREGGFNDKPRFDSNDDNRGNRVDYKPRRENGFGDRPQRSFGGEDRPRREGGFGDRPKR 588


>gi|282600167|ref|ZP_05973223.2| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
 gi|282566628|gb|EFB72163.1| ATP-independent RNA helicase DbpA [Providencia rustigianii DSM
           4541]
          Length = 476

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 8/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E G++ +T +QEA L   L  +DV   A+TGSGKT AFGL L   + A+N
Sbjct: 29  LPSEQLSNLNELGFLTMTPIQEAALPAILAGQDVRAQAKTGSGKTAAFGLGLLQHIDAKN 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125
                     +L + PTRELA QV  EL  L      +  + + G      +RD   + A
Sbjct: 89  FN------TQSLVLCPTRELADQVANELRRLARYIPNLKILTLCGGVPFSVQRDSLAHAA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL DH+  + +N+ HL+ +VLDEAD MLD+GF D+I+ I+  +P +R+ L+F
Sbjct: 143 HVIVATPGRLLDHLHKETVNLDHLQTLVLDEADRMLDMGFSDEIDAIISFAPHQRQTLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +++  Q +   + I S N           +     +   +  +L      
Sbjct: 203 SATWPESIADISQRIQNNPQTIEINSVNELPDVEQQFYEVARHD-KIELLQKLLSRDQPA 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC+T+         L +    V+ L G++ Q++R   L    +G +RV +ATDVA+
Sbjct: 262 SCVIFCNTKKDCQAVFDALNDSKQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAS 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE+VI+ ELS +PE  +HR GRT RAG+ G+++ +      +RA  L    N+
Sbjct: 322 RGLDIKALEMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANALEEMLNM 381

Query: 366 SVVWEPAPS 374
            + W P P+
Sbjct: 382 KLNWLPEPT 390



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LC+PEE    + +      + +     
Sbjct: 330 EMVINFELSWDPEVHVHRIGRTARAGQSGLAISLCSPEEAQRANALEEMLNMKLNWLPEP 389

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G              L  G K K     ++  L    G+    IG I + P   +V + 
Sbjct: 390 TGLRITPLEADMVTLCLDGGKKAKIRPGDILGALTGDVGLQGDDIGKITIHPIHAYVAIK 449

Query: 515 ADGVD----LLRRTVKLDKGIQLKYL 536
               +     L++     K ++ + L
Sbjct: 450 KSVANQAWKHLQQGKIKGKSVRARLL 475


>gi|156973702|ref|YP_001444609.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
 gi|156525296|gb|ABU70382.1| hypothetical protein VIBHAR_01406 [Vibrio harveyi ATCC BAA-1116]
          Length = 411

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 187/376 (49%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   L  ++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSAPITDAVKALGYEKPTSIQQKAIPIVLSGRNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-------QRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++        + R   L
Sbjct: 306 GIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +      +P P
Sbjct: 366 LERVEIEGFAPRKPVP 381


>gi|91080647|ref|XP_974536.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
 gi|270005826|gb|EFA02274.1| hypothetical protein TcasGA2_TC007938 [Tribolium castaneum]
          Length = 440

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 54  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQ 113

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D         AL I PTRELA+Q  +    L     V V V  GG ++  +   +
Sbjct: 114 IDPKKDCI------QALIIVPTRELALQTSQICIELAKHLDVRVMVTTGGTNLRDDIMRI 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +      +   K +VLDEAD++L   F+  ++ ++ + P++R+
Sbjct: 168 YQKVQVIIATPGRILDLMEKGVAVMDQCKILVLDEADKLLSQDFKGMLDTVIKNLPQERQ 227

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 228 ILLFSATFPLTVEQFMRKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 286

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 287 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVCS 346

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +    R+ +
Sbjct: 347 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYDDRFALHRIEQ 406

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 407 ELGTEI--KPIPKV 418


>gi|6320224|ref|NP_010304.1| Fal1p [Saccharomyces cerevisiae S288c]
 gi|2500524|sp|Q12099|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|160385737|sp|A6ZXY5|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
           Full=Translation initiation factor four A-like protein 1
 gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
 gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
 gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
 gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
 gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
 gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
          Length = 399

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 189/381 (49%), Gaps = 12/381 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L 
Sbjct: 23  STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
             +              AL ++PTRELA Q+G+ ++ L     V   A+  G       +
Sbjct: 83  QAIDLRKKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
           +  ++G   V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    
Sbjct: 137 KMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
           PK  ++++ SAT++  I  + + +  D V++ +  +      I      +     + + +
Sbjct: 197 PKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTL 256

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I         ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +
Sbjct: 257 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    +
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 356 AERLFREANVSVVWEPAPSVE 376
              + +  ++ +   PA   E
Sbjct: 377 LREIEKFYSIKINPMPANFAE 397


>gi|325522216|gb|EGD00856.1| DEAD/DEAH box helicase [Burkholderia sp. TJI49]
          Length = 480

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 185/368 (50%), Gaps = 1/368 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L +  Y   T VQ   +   L  +DV+ +AQTG+GKT  F L L   L+      
Sbjct: 11  PLLRNLQDLNYQTPTPVQAKAIPAVLGGQDVMAAAQTGTGKTAGFALPLLQRLVQHGPAV 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++V
Sbjct: 71  SSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT 
Sbjct: 130 ATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPARRQTLLFSATF 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I  +A N  +  V ++++  N   S I    V V   ++    ++++  +   +A+V
Sbjct: 190 TDDIRAMAANILRAPVNISVSPPNATASKIRQWVVTVDKRNKPELFMHLVAENNWDHALV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR+ V      L E  + V  + G+  Q  R  AL+  +     + +ATDVAARG+D
Sbjct: 250 FVKTRSGVDYLAARLDEAGYAVDTIHGDKPQPARLRALERFKQREVSMLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++  
Sbjct: 310 IDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIETLIRQTLPR 369

Query: 370 EPAPSVEA 377
           E  P  EA
Sbjct: 370 EEEPGFEA 377


>gi|195127173|ref|XP_002008043.1| GI12051 [Drosophila mojavensis]
 gi|193919652|gb|EDW18519.1| GI12051 [Drosophila mojavensis]
          Length = 797

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + 
Sbjct: 282 FDDQLLKAVRKAEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQR 341

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ G  
Sbjct: 342 E-LRAGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCE 400

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 401 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 460

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 461 ATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSE 520

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF + +A        L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 521 GAVLVFVTKKADAETVANNLLVKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 580

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 581 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDKEFAGHLVR 637


>gi|168026784|ref|XP_001765911.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682817|gb|EDQ69232.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 173/375 (46%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 34  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEK 93

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +          +A   L + PTRELA+Q  +  + L     + + V  GG S+  +   L
Sbjct: 94  IDQNK------NAVQVLLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRL 147

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       N+     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 148 YQPVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQ 207

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    + +    + +    +N+  E             V    + + +  +   
Sbjct: 208 ILLYSATFPVTVKSFKDRFLRKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 267 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSS 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 327 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 386

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 387 ELGTEIKPIP-PQID 400


>gi|168028511|ref|XP_001766771.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681980|gb|EDQ68402.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 406

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 173/375 (46%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 34  FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEK 93

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +          +A   L + PTRELA+Q  +  + L     + + V  GG S+  +   L
Sbjct: 94  IDQNK------NAVQVLLLVPTRELALQTSQVCKELAKHLNIQIMVTTGGTSLRDDIMRL 147

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D       N+     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 148 YQPVHLLVGTPGRVLDLANKGVCNLKECTMLVMDEADKLLSPEFQPLVEQLIGFLPENRQ 207

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    + +    + +    +N+  E             V    + + +  +   
Sbjct: 208 ILLYSATFPVTVKSFKDRFLRKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 267 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSS 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 327 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 386

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 387 ELGTEIKPIP-PQID 400


>gi|161528690|ref|YP_001582516.1| DEAD/DEAH box helicase domain-containing protein [Nitrosopumilus
           maritimus SCM1]
 gi|160339991|gb|ABX13078.1| DEAD/DEAH box helicase domain protein [Nitrosopumilus maritimus
           SCM1]
          Length = 440

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 10/370 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + I + L++ G+     +QEA++   L  +DV+  A TGSGKT AF L++
Sbjct: 1   MTKFQELGLKEDILKGLNDLGFEEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +        P +    L +APTRELA+Q+  E++     TG+ VA   GG  +  + 
Sbjct: 61  LQEI-------QPKNGIQGLIMAPTRELAMQITDEIKKFGKYTGIKVATVYGGQGMGLQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  IVV TPGRL DH++   + +  +  +VLDEAD MLD+GF DDI FILD +P+
Sbjct: 114 DALERGVEIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFIDDIGFILDLAPE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R M +FSAT+   I  L++ Y  +  +  + +++     ID   +++   D+    +  
Sbjct: 174 DRVMSLFSATMPTEILRLSEEYLNNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKY-LID 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   AIVFCST+       K L +  F  VA+ G++SQ  R  ++   R G+A + 
Sbjct: 233 FIKPTKGQAIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RGID+P +ELVI+ ++ +      HR GRT RAG KG +V  +  +       
Sbjct: 293 VATDVASRGIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAVTFVSYSSVGDWNL 352

Query: 359 LFREANVSVV 368
           + R+  V + 
Sbjct: 353 IKRQIKVPIK 362


>gi|303275259|ref|XP_003056927.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
 gi|226461279|gb|EEH58572.1| DEAD/DEAH box RNA helicase [Micromonas pusilla CCMP1545]
          Length = 803

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 151/544 (27%), Positives = 252/544 (46%), Gaps = 40/544 (7%)

Query: 5   ENIPQVIG--EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +N P  +    AL +RG  +L  +Q A+L P L  +D++  A+TG+GKT+ F L +  +L
Sbjct: 147 DNFPISVLTKAALRKRGIESLFPIQSAVLAPALEGRDIVGRARTGTGKTLGFSLPIIESL 206

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L  N   +    P  + +APTRELA QV  E E       +      GGV++  + R L+
Sbjct: 207 L-SNPSDARNRRPRCIVLAPTRELANQV--EAEIQLTVPSMRTVCVYGGVAITNQERALR 263

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NG   VVGTPGRL D I+   L +  ++  VLDEAD+ML +GF +D+E I+   P++R+ 
Sbjct: 264 NGVDFVVGTPGRLIDLIQRGSLQLQDIEYCVLDEADQMLAVGFEEDVERIMQEIPEERQT 323

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NIL 239
            +FSAT+   +  L + Y K+ V +++  +++Q        +  A S +   ++    + 
Sbjct: 324 FLFSATMPSWVKQLTRKYLKEHVNIDLVGDSKQKVADTIDILSCACSHQSRTMILADLVT 383

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y     AI F  T+      T  L   +   V   G+++Q +R   L+  RD R  V +
Sbjct: 384 VYGKGAKAICFTQTKREADEVTAALGRRMATEVL-HGDIAQAQRERTLKRFRDNRFSVLV 442

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D++LV+H EL ++ E+ +HR GRTGRA ++G ++ +       R   +
Sbjct: 443 ATDVAARGLDITDVDLVVHFELPNDTESFVHRCGRTGRANKRGTAIAMFTPRENYRLRTI 502

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            RE  V+     AP+   +    A +   +   +D    DE        A+   E++ A 
Sbjct: 503 VRETGVTFKSINAPTPAEVMTSSAVQAKHEMSLVD----DELLPYFTPTAEAILEEVRAA 558

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG----- 474
                                +GR      + A     G  +     S  +  VG     
Sbjct: 559 -------------------GGNGRSEAETLAAALAALSGHTEPPPPRSLLTSDVGLTTMV 599

Query: 475 -SKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLT--FVEVSADGVDLLRRTVKLDKGI 531
                   R L+  L   +      +G IR+  D +    +++   V+ +  + +  +G+
Sbjct: 600 AKGHMLLPRDLLRALSMVNRAAADGVGRIRILADNSGLCFDMNHTIVNDVIASAEELEGM 659

Query: 532 QLKY 535
           +L  
Sbjct: 660 ELSV 663


>gi|169618000|ref|XP_001802414.1| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
 gi|160703529|gb|EAT80597.2| hypothetical protein SNOG_12185 [Phaeosphaeria nodorum SN15]
          Length = 498

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 27  FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 86

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 87  VNPKISK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRL 140

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S  +  V+DEAD++L   F   +E +L   PK R+
Sbjct: 141 SDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQ 200

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + T    +      +N+  E             V    + + +  +   
Sbjct: 201 VMLFSATFPIVVKTFKDKHMNSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFNK 259

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 260 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 319

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 320 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQ 379

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 380 ELGTEI--QPIPQV 391


>gi|118582182|sp|Q0U7S9|DHH1_PHANO RecName: Full=ATP-dependent RNA helicase DHH1
          Length = 522

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 51  FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 111 VNPKISK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRL 164

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S  +  V+DEAD++L   F   +E +L   PK R+
Sbjct: 165 SDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQ 224

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + T    +      +N+  E             V    + + +  +   
Sbjct: 225 VMLFSATFPIVVKTFKDKHMNSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFNK 283

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 284 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 343

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 344 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQ 403

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 404 ELGTEI--QPIPQV 415


>gi|50555013|ref|XP_504915.1| YALI0F02695p [Yarrowia lipolytica]
 gi|74632960|sp|Q6C347|FAL1_YARLI RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49650785|emb|CAG77720.1| YALI0F02695p [Yarrowia lipolytica]
          Length = 397

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   +   +   G+   +++Q   +   ++ +D +  AQ+G+GKT  F +++  
Sbjct: 25  TFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLE 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      A+ ++PTRELA Q+   +  L     V    CIGG S+  + + 
Sbjct: 85  VID------TKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKK 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V GTPGR  D I+   L   +LK ++LDEADE+L+ GF++ I  I    P   
Sbjct: 139 LEAGQQVVSGTPGRCLDMIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAAT 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+  ++  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 199 QVVVVSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDLY 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + ++ F V ++ G+++Q++R + +   R GR+RV I
Sbjct: 259 DTLTITQAVIFCNTKKKVDWLTQQMKDNNFTVCSMHGDMAQKDRDSIMNEFRSGRSRVLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++     +       +
Sbjct: 319 STDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATNDDITTLRDI 378

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 379 EQYYSTQIDEMPV 391


>gi|301612898|ref|XP_002935945.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 1024

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 5/386 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 357 ILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LE 415

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 416 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 475

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 476 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSA 535

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T   A+  LA+      + V +   +   SD++   +++    +   ++ +L ++  K A
Sbjct: 536 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLELLGHYQEKGA 595

Query: 248 -IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 596 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVCKLLVATSVAAR 655

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 656 GLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARYAGDIIKALELS 715

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLF 392
               PA   +   E   Q+  +  + 
Sbjct: 716 GTAVPAELEQLWNEFKEQQKAEGKII 741


>gi|302335558|ref|YP_003800765.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
 gi|301319398|gb|ADK67885.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
          Length = 510

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 4/360 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             A+ + GY   T VQ   + P LR +DV+ +AQTG+GKT AF L     L         
Sbjct: 55  LAAVRDMGYEVPTPVQARSIPPALRGRDVIAAAQTGTGKTAAFLLPSLDGL----PHAQA 110

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              PL L + PTRELA Q+      + A+TG   A  +GGV    +RR L+ G  ++V T
Sbjct: 111 GQGPLMLVVTPTRELAQQIDEVARAICARTGHTAATVVGGVGYEPQRRALRRGCDLLVAT 170

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     ++  ++ +VLDEAD MLD+GF   +  I+  +P+ R+ L+FSAT+  
Sbjct: 171 PGRLIDLMDQGDAHLGEVQVLVLDEADRMLDMGFLPAMRKIVGRTPEGRQTLLFSATLDG 230

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +T+  ++  KD VRV IA +      I+   + V+   +  A+ ++L   GA+  IVFC
Sbjct: 231 HVTSNTESLVKDPVRVEIAHKGTAAETIEQFVLGVSPEAKHAALTHVLENEGAERVIVFC 290

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +       + L    F    + G  SQ +R  AL+  R+G   V +ATDV ARGID+P
Sbjct: 291 RGKHRADGICRRLRRKGFSAAPIHGNRSQNQRERALRGFREGSVGVLVATDVLARGIDIP 350

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  V++ ++  + E+ +HR GRTGRAG  G ++  + ++       + +     V   P
Sbjct: 351 DVAYVVNFDVPGDAEDYIHRIGRTGRAGESGWALTFVTEDDYLDLRDVEKLMGRVVPTYP 410


>gi|213407104|ref|XP_002174323.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002370|gb|EEB08030.1| ATP-dependent RNA helicase dhh1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 498

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 47  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPSLEK 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L     V V V  GG ++  +   L
Sbjct: 107 VDTKKSKI------QTLILVPTRELALQTSQVCKTLGKHMNVNVMVTTGGTTLRDDIIRL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIVVGTPGR+ D       + S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 161 NEPVHIVVGTPGRVLDLAGKGVADFSECSNFVMDEADKLLSPEFTPIIEQLLTHFPKNRQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + ++SAT    + +    +      +N+  E             V    + + +  +   
Sbjct: 221 ISLYSATFPLLVKSFMDKHLNKPYEINLMDELTLRGV-TQYYAFVDERQKVHCLNTLFSK 279

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 280 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCS 339

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G +G+++  I    +    ++  
Sbjct: 340 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWEDRFNLYKIET 399

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 400 ELGTEIQPIPA 410


>gi|15241415|ref|NP_199941.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75335491|sp|Q9LU46|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35
 gi|8843865|dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|110740861|dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidopsis thaliana]
 gi|332008678|gb|AED96061.1| DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana]
          Length = 591

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 196/396 (49%), Gaps = 15/396 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E      +    P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 264

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI 
Sbjct: 265 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 324

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 325 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 384

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q++R  A+   
Sbjct: 385 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 443

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 444 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 503

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERD 382
           N         + L +EA   +    A   + + E +
Sbjct: 504 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAE 539


>gi|194904159|ref|XP_001981012.1| GG23261 [Drosophila erecta]
 gi|190652715|gb|EDV49970.1| GG23261 [Drosophila erecta]
          Length = 709

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 187/375 (49%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 292 QCFAEYPDLLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 350

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+   +      GG     +  DL
Sbjct: 351 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKK-YSFRDMKAVCVYGGGDRRMQISDL 409

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++   +++S +  +VLDEAD MLD+GF   I  ++      R+
Sbjct: 410 ERGAEIIICTPGRLNDLVQANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 469

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NI 238
            +M SAT  P +  LA++Y K+ ++V + S +   +    + + +   D++        +
Sbjct: 470 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIQLLEDDKEKFNTIKSFV 529

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+FC  +A     +  L    F    + G   Q +R  A+  ++ G   + 
Sbjct: 530 RNMSNTDKIIIFCGRKARADDLSSELTLDGFMTQCIHGNRDQIDREQAIADIKSGAVHIL 589

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGRKG S+  I +     A+ 
Sbjct: 590 VATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRKGTSISFITREDWGMAKE 649

Query: 358 --RLFREANVSVVWE 370
              + +EA   V  E
Sbjct: 650 LIDILQEAEQEVPDE 664


>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 1112

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 212/462 (45%), Gaps = 28/462 (6%)

Query: 5   ENIPQVIGEA------------LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +NIP+ + +             L++ G+   TS+Q   L   +  +DV+  A+TGSGKT+
Sbjct: 482 KNIPKPVQKWAQCGLTRRTLDVLADMGFDKPTSIQMQALPVIMSGRDVVGVAKTGSGKTL 541

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
           AF L +   ++ +         P+ L + PTRELAVQ+ R+ +      G+      GG 
Sbjct: 542 AFLLPMFRHIM-DQPPLKDTDGPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGA 600

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
            +  +  +L+ GA IVV TPGR+ D     +G+  N+  +   VLDEAD M D+GF   +
Sbjct: 601 PIREQIAELKRGAEIVVCTPGRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQV 660

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I  +    R+ ++FSAT+   I +L K   K  V + +   +   SDI     +V   
Sbjct: 661 MKIFANIRPDRQTILFSATMPRIIDSLTKKVLKSPVEITVGGRSVVASDITQIVEIVPED 720

Query: 230 DRDNAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            +   ++ +L     K     ++VF   +       K L    +  +++ G   Q +R +
Sbjct: 721 QKFYHLLGLLGELYDKDEDARSLVFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDS 780

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +   + G   + IAT VAARG+D+  L+LV++ +  S+ E+ +HR GRTGRAG KG +V
Sbjct: 781 TISDFKKGIVPILIATSVAARGLDVKQLKLVVNYDCPSHSEDYVHRCGRTGRAGNKGTAV 840

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             I +  +  A  + +    S    P   +E +R+   +++            D      
Sbjct: 841 TYITEEQESCASAVAKALEQSGQPVP-ERLEEMRKAWKEKVK------SGKAKDSSGFGG 893

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
             L + D E+ AA  LR  +      E+       +  D+ +
Sbjct: 894 KGLDRLDAEREAAR-LRERKTHKAEGEDDDVKEEKTEEDKVK 934


>gi|303390992|ref|XP_003073726.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302874|gb|ADM12366.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 400

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 120/407 (29%), Positives = 210/407 (51%), Gaps = 11/407 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E NI   + +A    G    T +Q+ ++   L   D++  +QTGSGKT+AF L + 
Sbjct: 1   MEFDELNIDDSLVQACQRNGITRPTEIQKQVIPMVLGGNDIIAVSQTGSGKTLAFVLPIV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S LL +N  F        L +APTREL+ Q+        + TG+ V + +GG + + +  
Sbjct: 61  SRLLLKNRSF------FCLVVAPTRELSSQIAECFNMFGS-TGLRVCLLVGGTNFNLQAN 113

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVVGTPGR+ +HI + K      ++ +VLDEAD   +  F +D+E I+ S  +
Sbjct: 114 QLSKHPHIVVGTPGRIAEHILKTKSFKAERIRKLVLDEADRFFEQDFVEDLETIIRSLRE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+F+AT+S  I+ L+ +       + +       S +       A+  + +A+V  
Sbjct: 174 KRQTLLFTATMSNEISKLSSSILIKPKTIRVVEGYETVSALKEYYFFTAMKWKSSALVEF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +   + IVF S   +    +  L++  F   AL GELSQ++R   ++M ++ +  V 
Sbjct: 234 LEMNPGASTIVFVSMCITARVMSLALSKLGFHSEALYGELSQEKREETMRMFKENKFSVL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDV +RG+D+  ++LVI+ ++  + ++ +HR GRT RAGR G ++ ++ Q    + +R
Sbjct: 294 VCTDVGSRGLDISHVDLVINFDVPKSGKDYVHRVGRTARAGRAGTAITLVTQYDVEQLQR 353

Query: 359 LFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           +      S+        + E+IRE+  + I +    L   +   ++ 
Sbjct: 354 VEFVLKKSLEEFKPVKKNFESIREKVEETIQEAQEILKGERKRNRRH 400


>gi|164656240|ref|XP_001729248.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
 gi|159103138|gb|EDP42034.1| hypothetical protein MGL_3715 [Malassezia globosa CBS 7966]
          Length = 885

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 117/515 (22%), Positives = 218/515 (42%), Gaps = 34/515 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + + + GYV  T +Q   +   +  +D++  A+TGSGKT+AF L +   +  + 
Sbjct: 260 LPVNCLDVIKKLGYVAPTPIQSQAIPAIMSGRDMIGVAKTGSGKTMAFLLPMFRHVKDQR 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQ+ R+ +       +  A   GG  +  +  +++    
Sbjct: 320 P-VESGEGPVALVMTPTRELAVQIFRDAQPFLRAFNLRGACAYGGTPISEQIGEMKKLVE 378

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VV TPGR+ D      G+  N+  +  +VLDEAD M DLGF   +  IL      R+ +
Sbjct: 379 VVVATPGRMIDLLTANSGRVTNMQRVTYLVLDEADRMFDLGFEPQVMKILGLIRPDRQTV 438

Query: 184 MFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---- 238
           +FSAT    + +LA+   +     V +   +   ++I     +   S + + ++ I    
Sbjct: 439 LFSATFPKPMESLARKMLRHEPLEVIVGGRSVVAAEIRQIVEVRPDSSKFHRLLEILGQL 498

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +      ++F   + +      +L +  +  ++L G   Q +R   L   + G   + 
Sbjct: 499 YHHDEDARTLIFVDRQDAADELMHMLMKRGYPTMSLHGGKDQADRDTTLADFKAGIVPIL 558

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            AT VAARG+D+  L+LV++ ++ ++ E+ +HR+GRTGRAG +G  V  I     R A+ 
Sbjct: 559 TATSVAARGLDVKQLKLVVNYDVPNHLEDYVHRAGRTGRAGNQGTCVTFITPEQDRYAKD 618

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLF----------LDSIQGDEKKMVDVLL 408
           +      S    P P +EA+  +  +++ Q              L+ ++   ++++    
Sbjct: 619 IVAALRASKATVP-PELEALASQFKEKLQQGKAHASGSGFGGRGLERLEASRERLLQAQA 677

Query: 409 ------AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                    DPE +AA         L   +       +    R   +         +   
Sbjct: 678 SIFIEDEDADPEAVAARAAD-ETQRLNGTDIQVRTGPIPEAVRENREPVYTDADQAANQA 736

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQ 497
                   L       A+   L  ++ R + +  +
Sbjct: 737 -------RLEAARLAGADTSKLQEVIARINSVASR 764


>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
           [Acyrthosiphon pisum]
          Length = 771

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 8/453 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +A+S   YV+ T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 171 NISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLPILERLLYR 230

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+P +    L + PTREL VQV +  + L   T V V + +GG+ +  +   L+   
Sbjct: 231 PKGFTPIT--RVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQESILRKNP 288

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DH       +++ L+ +VLDEAD MLD  F D ++ I++   + R+ ++
Sbjct: 289 DVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCARTRQTML 348

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++ A+  LA       V++ + S      ++    V +      DRD  +  ++  
Sbjct: 349 FSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDATLAALVCR 408

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F  T+A   R   +L     +   L G LSQ +R  AL+  +D    + IAT
Sbjct: 409 TFRDHTMIFVRTKADAHRVKILLGLFGLKAGELHGNLSQPQRLEALRQFKDEELDLLIAT 468

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + R
Sbjct: 469 DVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSVSIASEQDRKVLKEVIR 528

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +A   V     P    I ++  +R+      +  I  +E +   +   +   EK      
Sbjct: 529 KAKNPVKNRVIPI--EILDKYKERVDSLRNEVKCIMTEEYEERQMNRTEEFAEKTEKMAK 586

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
                 +   +E       + ++R     R+ +
Sbjct: 587 TSIGTLIKKKDEKKRDWFQTQKERGEAKKRSRE 619


>gi|226953843|ref|ZP_03824307.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
 gi|226835434|gb|EEH67817.1| ATP-dependent RNA helicase [Acinetobacter sp. ATCC 27244]
          Length = 647

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 160/600 (26%), Positives = 247/600 (41%), Gaps = 43/600 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       +R    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 63  NALAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  + + LMFSAT +  I  LA+    D  R+ I + +  ++D+            + 
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G +V +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATYRE 362

Query: 353 QRRAERLFR----EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           + +   L        NVS +    PS    R                 +    +      
Sbjct: 363 RGKIRALEDYLDARLNVSEIEGLEPSPPPARSGRDGGGRGRGGRDGGGRDGGGRGRGGFG 422

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-- 466
                E    G  +    G   P           R  F  + R  +     R   +G   
Sbjct: 423 GGRRFEG--EGNFKRREGGDDRPRRSFDDKPRGERPSFGGEDRPRREFNSDRPRREGGFE 480

Query: 467 SWFSLSVGSKQKAEARWLMPMLCR-----SSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                   S      R       R     +S   R+  G    +P  +F      G D  
Sbjct: 481 DRPRREFNSD---RPRREGGFEDRPRREFNSDRPRRE-GGFDDRPKRSF-----GGEDRP 531

Query: 522 RRTVKLDKGIQLKYLG------------GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
           RR    D+  +                 G + D++  +   F  +  +D   +  +R  G
Sbjct: 532 RREFNSDRPRREGGFNDKPRFDSNDDNRGNRVDYKPRREGSFGDRPKRDFGDRPQQREGG 591


>gi|218505708|ref|NP_001136206.1| predicted gene, EG668137 [Mus musculus]
          Length = 411

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    C+GG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +    +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNLADLI 411


>gi|145352866|ref|XP_001420755.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580990|gb|ABO99048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 466

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 131/456 (28%), Positives = 220/456 (48%), Gaps = 10/456 (2%)

Query: 2   KIFENI--PQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + FE++     + +A ++  G+   T +Q A +   LRE+DV+  AQTGSGKT AF L +
Sbjct: 17  QTFEDLGVCAELADACAKIMGWRAPTPIQCAAVPEALRERDVIGLAQTGSGKTGAFALPI 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +LL     F       +L ++PTRELA+Q+  ++E L A  G   A  +GGV +  + 
Sbjct: 77  LQSLLDAPQGFH------SLILSPTRELAMQIAEQIETLGAGVGARTATLVGGVDMTTQA 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    H++VGTPGR+ DH+      ++  LK +VLDEAD +L+L F ++I+ IL   P
Sbjct: 131 IKLGKRPHVIVGTPGRVVDHLENTKGFSLRALKVLVLDEADRLLNLDFEEEIDKILRVIP 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             RR  +FSAT++  +  L +   +D V+V ++++      +    + +    +D     
Sbjct: 191 SDRRTQLFSATMTNKVAKLQRACLRDPVKVEVSAKYSTVESLKQHYLFIPAKHKDCYATY 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +     A   IVF  T  +  +   +     F  V + G++SQ +R  ALQ  + G   +
Sbjct: 251 LFNELSASTLIVFARTCDATRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKSGERNI 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+P +++VI+ ++  N ++ +HR GRT RAGR G++V ++ Q      +
Sbjct: 311 LIATDVASRGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQ 370

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++ R  N  +   P      +   D     Q          DE+K         D +   
Sbjct: 371 KIERLINKKLDKYPLEEEAVMLLYDRVNEAQRIAIQQMRDQDERKGKGAKRGFKDDDDAD 430

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
                + +           V+  S  +  +   R F
Sbjct: 431 KMLNILGKKDYGGGGGRARVTKQSKLNGAKGPPRRF 466


>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 507

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 33  EPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 92

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 93  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 151

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT
Sbjct: 152 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSAT 211

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 212 FSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWEHAL 271

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 272 VFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 331

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 332 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 391

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 392 REEEPGFEA 400


>gi|297817170|ref|XP_002876468.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322306|gb|EFH52727.1| hypothetical protein ARALYDRAFT_486308 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 639

 Score =  193 bits (489), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 121/388 (31%), Positives = 191/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ +V+   +    YV  T VQ   +      +D++  AQTGSGKT AF   +
Sbjct: 136 VNTFAEIDLGEVLNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 195

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     E  R      PLA+ ++PTRELA Q+  E      +TGV V V  GG  V
Sbjct: 196 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 255

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I+ 
Sbjct: 256 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKFLALDEADRMLDMGFEPQIRKIVQ 315

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                       ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 316 QMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSD 375

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F    + G+ SQQER
Sbjct: 376 KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQER 435

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 436 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 495

Query: 344 SVFVIPQNMQRRAE---RLFREANVSVV 368
           +      N    A+    L +EAN  V 
Sbjct: 496 ATAFFNDNNTSMAKPLAELMQEANQEVP 523


>gi|295134684|ref|YP_003585360.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
 gi|294982699|gb|ADF53164.1| ATP-dependent RNA helicase [Zunongwangia profunda SM-A87]
          Length = 447

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 118/409 (28%), Positives = 190/409 (46%), Gaps = 11/409 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL E G    T +QE    P +  +DV+  AQTG+GKT A+ L L   L   
Sbjct: 7   NLNTPLRNALEEMGIQKPTPIQEQAFAPVMSGRDVVGIAQTGTGKTYAYLLPLLRML--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P  L + PTREL VQV  E++ L     + VA   GGV+++ ++++LQ G 
Sbjct: 64  --KFSKQKNPRILIMVPTRELVVQVVEEIDKLAKYINLRVAGIYGGVNINTQQQELQRGL 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TP RL D +  + + +  ++  V+DE D MLDLGF+  +  I++  P  R+ +MF
Sbjct: 122 DIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPPNRQSIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDN--AIVNILRYH 242
           SAT++  +  +         +++I  S     +      +L   + + N    +   +  
Sbjct: 182 SATMTETVEEMINENFNAPEKISIAVSGTPLDNIQQQGYILPNFNTKANLLKHLFSDKET 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I     R +   F  +  +   +V  +    SQ  R   ++   +G  R+ IATD
Sbjct: 242 FKKILIFISDKRIADRLFDSLGQKFPGEVSLVHTGKSQNYRLKNVEDFDEGLTRIMIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+DL  +  VI+ +  + PEN +HR GRTGRA +KG S+    +      + +   
Sbjct: 302 VMARGLDLDAVSHVINFDTPNYPENYMHRIGRTGRAEKKGNSILFTTEKELEYLKAIEEL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             + V     P+   I     + I ++      I    K   +   A H
Sbjct: 362 MKMEVPKIEIPAAVKISN---ELIPEERPRAIEINNPSKASDEAGPAFH 407


>gi|91227745|ref|ZP_01261972.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269967907|ref|ZP_06181947.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
 gi|91188392|gb|EAS74687.1| RhlE [Vibrio alginolyticus 12G01]
 gi|269827430|gb|EEZ81724.1| ATP-dependent RNA helicase RhlE [Vibrio alginolyticus 40B]
          Length = 402

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 197/404 (48%), Gaps = 9/404 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   LR ++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSASIADAVKALGYEKPTSIQQKAIPIVLRGRNLIAAAQTGTGKTASFVLPILEKL--SR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   + IA  +   S+I      V    + + + ++L+ +    
Sbjct: 186 ATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHLLKENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L +VI+ +L    +  +HR GRTGRAG KG ++ ++ ++  +    +       
Sbjct: 306 GIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +            E  A R       L+ +  +++K  D   +K
Sbjct: 366 LERVEI-------EGFAPRKPVPISILNYVPKNKRKPHDKRESK 402


>gi|90579695|ref|ZP_01235504.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90439269|gb|EAS64451.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 455

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 183/345 (53%), Gaps = 2/345 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT  F L +   L  ++
Sbjct: 8   LNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPILQML--DD 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL +APTRELAVQV   ++       +      GGV    ++R L  G  
Sbjct: 66  GTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLTSMAMYGGVDYEPQKRRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FS
Sbjct: 126 ILVATPGRLLDMYTKRAIHFDAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ + +++A +      ID   V V    +   + ++++      
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSHLIQEQKWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      +     SQ  RS  L+  ++G+ +  IAT VA+R
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           GID+  L  V++ +L   PE  +HR GRTGRAG  G ++  + ++
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRD 350


>gi|7661920|ref|NP_055555.1| eukaryotic initiation factor 4A-III [Homo sapiens]
 gi|109118862|ref|XP_001110130.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Macaca
           mulatta]
 gi|297701955|ref|XP_002827960.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Pongo abelii]
 gi|332263899|ref|XP_003280987.1| PREDICTED: eukaryotic initiation factor 4A-III [Nomascus
           leucogenys]
 gi|20532400|sp|P38919|IF4A3_HUMAN RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           initiation factor 4A-like NUK-34; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3; AltName: Full=Nuclear matrix protein 265; Short=NMP
           265; Short=hNMP 265
 gi|295982193|pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|295982194|pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
           Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
           Machinery
 gi|13177790|gb|AAH03662.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|13325146|gb|AAH04386.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|15029856|gb|AAH11151.1| Eukaryotic translation initiation factor 4A, isoform 3 [Homo
           sapiens]
 gi|48145617|emb|CAG33031.1| DDX48 [Homo sapiens]
 gi|60655857|gb|AAX32492.1| DEAD-box polypeptide 48 [synthetic construct]
 gi|119609990|gb|EAW89584.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|119609991|gb|EAW89585.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48, isoform CRA_a [Homo
           sapiens]
 gi|158254648|dbj|BAF83297.1| unnamed protein product [Homo sapiens]
 gi|168274374|dbj|BAG09607.1| eukaryotic initiation factor 4A-III [synthetic construct]
          Length = 411

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|312885453|ref|ZP_07745092.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311302033|gb|EFQ79063.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 450

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 118/430 (27%), Positives = 199/430 (46%), Gaps = 27/430 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N  + I  A+++ GY   T VQ+  + P +  +DV+  AQTG+GKT A+ L +  
Sbjct: 4   TFEDFNFNRQILNAIADAGYTEATPVQQKAIPPIMNGQDVMGIAQTGTGKTAAYMLPIIM 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +++  S   A+ IAPTRELA+Q+    +     T + +    GG+    ++  
Sbjct: 64  RL-----KYAQGSDARAIVIAPTRELALQIEENAKEFAKYTDLRIVSLYGGLGPKTQKEL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G  I+V TPGR  D      +    L+ +VLDEAD+M+D+GF   I  IL+  P+KR
Sbjct: 119 MDKGVDIIVATPGRFMDVYLTGHMVTKKLEVLVLDEADKMMDMGFMPQINRILEVVPRKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           + L+FSAT+S  I  L+ N+ +    V +  +      ++     +  +  + N +  +L
Sbjct: 179 QNLLFSATMSDKIQELSSNFLEFPTVVEVTPQATPAQTVNQVLYHVPNMKTKINLLKKLL 238

Query: 240 RYHGAKNA-IVFCSTR--ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    I+FC TR  A       +      +V  L     Q  R NA+   ++   +
Sbjct: 239 DAPDDIKKLIIFCKTRVAAEDVYKFLLRKFGEKEVRVLHANKGQNTRINAINAFKNDEVK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RGID+ D+  VI+ ++    E+ +HR GRTGRA + G ++       +   
Sbjct: 299 ILVATDVASRGIDVSDVSHVINFDVPVVYEDYVHRIGRTGRAFQSGEAITFCNPAEEYYI 358

Query: 357 ERLFREANVSVVWEPAP------------SVEAIRERDAQRILQDP----LFLDSIQGDE 400
            ++ +     +     P              +  +E D Q+   DP     F +    ++
Sbjct: 359 RKIEKLIRQQIPVVLLPPDVFVDETPYEERQDQNKEIDLQKRKDDPDFKGAFHEKKTVNQ 418

Query: 401 KKMVDVLLAK 410
           +K  D    K
Sbjct: 419 RKKFDAAKGK 428


>gi|303274675|ref|XP_003056653.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461005|gb|EEH58298.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1177

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 8/385 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E +   G+     +Q   L   +  +D +  A+TGSGKT+ + L +   +  + 
Sbjct: 490 LSNRVMELIRRSGFEKPMPIQCQCLPVIMSGRDCIAVAKTGSGKTLGYILPMLRHIKDQR 549

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  +    P+ + + PTREL  Q+G++        G+V     GG  V  +  +L+ G  
Sbjct: 550 E-IAQGDGPVGMIMGPTRELVTQIGKDCRKFGRCAGMVAVSVYGGSGVAAQIGELKRGCE 608

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV  TPGR+ D +     +  N+  +   VLDEAD M D+GF   I  I+++    R+ +
Sbjct: 609 IVACTPGRMIDILTTGAGRITNLRRVTYFVLDEADRMFDMGFEPQITRIMNNLRPDRQTV 668

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT   A+  LA+    + + + +   +  +SDI+    +    DR    + +L    
Sbjct: 669 MFSATFPHAMEALARAALTNPIEIQVGGRSVVNSDIEQLVEMRPEEDRFLRALELLGEWY 728

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   I+F +++    R  + L    +  ++L G   Q +R   +   +     + +AT 
Sbjct: 729 ERGKIIIFVASQDKCDRIFRDLLRSGYPCLSLHGGKEQTDRECTIADFKSDVCNILVATS 788

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAG KG +V  I +  ++ A  L + 
Sbjct: 789 VAARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISEEEEKFAPDLVKA 848

Query: 362 --EANVSVVWEPAPSVEAIRERDAQ 384
             +A   V  +     +A  ++  +
Sbjct: 849 MTDAKQPVPADLRTMADAYSKKKKE 873


>gi|145632266|ref|ZP_01788001.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
 gi|144987173|gb|EDJ93703.1| ATP-dependent RNA helicase [Haemophilus influenzae 3655]
          Length = 415

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 11/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL  
Sbjct: 15  SLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTIAFLTATFHHLLTH 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G 
Sbjct: 75  QDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRML 183
            I++GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI +       P+ R  +
Sbjct: 135 DILIGTTGRVIDYVKQGVISLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQSRLTM 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++    
Sbjct: 195 LFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHCIKEELFYPSNQDKMALLLTLMEDEW 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDV
Sbjct: 255 PERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +    
Sbjct: 315 AARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYI 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + + + +L+ P
Sbjct: 375 GHSIP---------VSQYETEALLELP 392


>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 481

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 186/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FSDDIRAMAATILRGPVNISVSPPNATASKIKQWVVTVDKRNKPDLFMHLVAENKWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIKQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|34581357|ref|ZP_00142837.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
 gi|28262742|gb|EAA26246.1| ATP-dependent RNA helicase RhlE [Rickettsia sibirica 246]
          Length = 410

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 209/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 350

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D    ++     K+  D
Sbjct: 351 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFD 398


>gi|195552710|ref|XP_002076525.1| GD17585 [Drosophila simulans]
 gi|194202136|gb|EDX15712.1| GD17585 [Drosophila simulans]
          Length = 786

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 273 FDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQ 331

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 332 KQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 391

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFS
Sbjct: 392 IIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFS 451

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 452 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 511

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 512 GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 571

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 572 ARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 628


>gi|114799942|ref|YP_759839.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
 gi|114740116|gb|ABI78241.1| ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC 15444]
          Length = 464

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 197/371 (53%), Gaps = 3/371 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     I  +L++ GY   T +QE  +   ++ +D++  AQTG+GKT+AF   +
Sbjct: 6   MSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPI 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L + N   +P      L +APTRELA Q+        A   + V +  GG  +  + 
Sbjct: 66  LDRL-SRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQI 124

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GAHI+V TPGRL D +  + +++  ++ ++LDEAD+MLDLGF   +  I  + P 
Sbjct: 125 RQLERGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPS 184

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT+  A+ +LA  + ++   V++A        I+ R   V   ++ + ++  
Sbjct: 185 KRQTLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEK 244

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R    ++AIVF  T+       K LA+     VA+ G  SQ +R  AL+  + GR  + 
Sbjct: 245 IRDPELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPIL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI +  L  VI+ +L   PE  +HR GRT RAG  G+++    ++ +     
Sbjct: 305 VATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDERPTLRA 364

Query: 359 LFREANVSVVW 369
           + +   + +  
Sbjct: 365 IEKLTGLKLAP 375


>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 418

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 194/395 (49%), Gaps = 6/395 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--A 64
           +   + E +   GY   T +Q   +   L  KDV+  AQTG+GKT AF L L   L    
Sbjct: 8   LHSFLLEQVELLGYQTPTPIQLEAIPAVLANKDVMAGAQTGTGKTAAFALPLLHRLFEAH 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + +   P +    L + PTRELA QV +          +   V  GG S++ +  +++ G
Sbjct: 68  QIENPEPNNQVSVLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINPQIDEIRQG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL + +    +++S LK +VLDEAD MLD+GF  DI+ IL   P++++ L 
Sbjct: 128 VDVLVATPGRLLELVMKDLVDVSQLKTLVLDEADRMLDMGFIIDIQRILKRLPQQKQTLF 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  L+K   +D V + +   N     ++     V    +   I  ++     
Sbjct: 188 FSATFDDAIFKLSKTLLQDPVLIEVDQRNTSAEQVEQIFYAVDKEKKSGLISYLIGSKNW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F  T+    R  K + +   +  A+ G+ SQ  R   L   + G  R  +ATDVA
Sbjct: 248 QQVLIFTRTKEGADRLAKEMKKDGIETQAIHGDKSQGARDRVLAAFKAGELRALVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L  VI+ EL  N E+ +HR GRTGRAG+ G++V ++ +      + + +  +
Sbjct: 308 ARGLDIEALSYVINHELPYNAEDYIHRIGRTGRAGQSGLAVSLLSEKENYLLKDIEKLLD 367

Query: 365 VSV--VWEP--APSVEAIRERDAQRILQDPLFLDS 395
             +   W P   P ++    +  +R L +    + 
Sbjct: 368 TPLASQWYPGFEPDLDKPESKSNKRPLSNKEKRNQ 402


>gi|322794838|gb|EFZ17785.1| hypothetical protein SINV_13785 [Solenopsis invicta]
          Length = 586

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 199/392 (50%), Gaps = 24/392 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 168 ITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPI 227

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +     R  P  A         PL L +APTRELA Q+  E      ++ +  AV  
Sbjct: 228 LNQIYESGPRPPPPQANSSSRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVY 287

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I
Sbjct: 288 GGSNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQI 347

Query: 170 EFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I+           + LMFSAT    I  LA+++  + + + +        +I  + V 
Sbjct: 348 RRIVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVW 407

Query: 226 VALSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           V   D+ + ++++L+     +       +VF  T+       + LA   + V ++ G+ +
Sbjct: 408 VEEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRT 467

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER +AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G
Sbjct: 468 QREREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMG 527

Query: 340 RKGMSVFVI---PQNMQRRAERLFREANVSVV 368
             G++         N+ R    L  EAN  + 
Sbjct: 528 NLGLATSFFNHKNHNLVRDLVSLLIEANQELP 559


>gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida BIRD-1]
          Length = 443

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    + +   ++LR    K  +
Sbjct: 189 FSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLRKQRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  +    +      ++ 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVLTRQTLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|114051321|ref|NP_001039653.1| eukaryotic initiation factor 4A-III [Bos taurus]
 gi|154147644|ref|NP_001093663.1| eukaryotic initiation factor 4A-III [Sus scrofa]
 gi|157821621|ref|NP_001093628.1| eukaryotic initiation factor 4A-III [Rattus norvegicus]
 gi|126308661|ref|XP_001370945.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
 gi|109825494|sp|Q2NL22|IF4A3_BOVIN RecName: Full=Eukaryotic initiation factor 4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|123780398|sp|Q3B8Q2|IF4A3_RAT RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|251764755|sp|A6M931|IF4A3_PIG RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|77748037|gb|AAI05876.1| Eukaryotic translation initiation factor 4A, isoform 3 [Rattus
           norvegicus]
 gi|84708898|gb|AAI11185.1| Eukaryotic translation initiation factor 4A, isoform 3 [Bos taurus]
 gi|85792296|gb|ABC84196.1| eukaryotic translation initiation factor 4A isoform 3 [Sus scrofa]
 gi|149054966|gb|EDM06783.1| rCG33565, isoform CRA_a [Rattus norvegicus]
 gi|296476097|gb|DAA18212.1| eukaryotic initiation factor 4A-III [Bos taurus]
          Length = 411

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|255524857|ref|ZP_05391806.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|255511427|gb|EET87718.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
          Length = 375

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 187/366 (51%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I + L   G    T VQ   ++     +DV+V +QTG+GKT+AF L +   +    
Sbjct: 8   ISEDIVKILKNNGITEPTPVQAESISLIKNGRDVIVESQTGTGKTLAFLLPIFENIS--- 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +   A  AL + PTRELA+Q+  E   L     + +    GG  +  + + L+ G H
Sbjct: 65  ---TKVDAVQALILTPTRELALQITEEALKLKQAKDINILAAYGGKDIGSQLKKLKTGIH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  VLDEAD+ML +GF++D+E I+  + KKR+ L FS
Sbjct: 122 LIIATPGRLLDHLERKTIDLSKLKTFVLDEADQMLLMGFKNDVETIIKETSKKRQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+  +  LA  Y K+ + V I  E      I  + V      + +A+  +L       
Sbjct: 182 ATINSDVKRLAYRYTKEPLAVTINKEEVTLDAIKQQVVETTDRRKQDALCTVLNQDNPYM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V      L +       L  ++ Q +R   ++  R+G  +  IATDVA+R
Sbjct: 242 AIIFCRTKRRVDELEVSLYKRGCDCKKLHSDILQSKRERIMKAFRNGDFQYLIATDVASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++  + E+ +HR GRTGRAG +G +   I    + R E + +     
Sbjct: 302 GLDISGVSHIYNYDIPESAESYIHRIGRTGRAGEEGYTCLFIDPKDRLRLEEIEKAIKFK 361

Query: 367 VVWEPA 372
           +     
Sbjct: 362 IPRRDL 367


>gi|167384217|ref|XP_001736854.1| ATP-dependent rRNA helicase RRP3 [Entamoeba dispar SAW760]
 gi|165900561|gb|EDR26857.1| ATP-dependent rRNA helicase RRP3, putative [Entamoeba dispar
           SAW760]
          Length = 432

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/402 (29%), Positives = 216/402 (53%), Gaps = 16/402 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+++   P+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +
Sbjct: 9   KTFKDLGLIPEVL-KVVEYLGYKKPTKIQENSIPVALQKKDIIGIAQTGSGKTASFLLPM 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRE 117
              LL   ++     A   + I PTRELA QV   L+ +      ++  + +GG+ V ++
Sbjct: 68  IQHLLNVKEK---NRAFYCIIIEPTRELAAQVVEVLDEIGKALPGLMSCLLVGGMDVMKQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
              L    H++VGTPGR+  HI+       +I  +K +V+DEAD++L++ F ++I+++++
Sbjct: 125 SVQLAKRPHVIVGTPGRIVYHIKNTKGVEESIQKVKFLVIDEADKLLEMDFANEIDYLIE 184

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDN 233
             P +R  ++FSAT+S  +  L +      V++    +  Q  D        +    RD 
Sbjct: 185 KLPSQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRDG 244

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +++IL+    K+ I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G
Sbjct: 245 YLLSILKETEGKSIIIFTMKCSGCTKLVMMLRQLGYAAIPLHGKMSQQKRLIALEKFKSG 304

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q   
Sbjct: 305 KRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYIHRVGRTARAGKSGYAITLVTQYSI 364

Query: 354 RRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPL 391
              +R+       +        EAI    +  DA RI+   L
Sbjct: 365 ELYQRIETMIEKKLNEYKVNEKEAIAYSQKANDAMRIVSQQL 406


>gi|167525138|ref|XP_001746904.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
 gi|163774684|gb|EDQ88311.1| p68DDX5 RNA helicase [Monosiga brevicollis MX1]
          Length = 487

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 178/380 (46%), Gaps = 11/380 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P  + + L   G+   T +Q       L  ++++  A TGSGKT++F L  
Sbjct: 60  ITTFERASFPAYVMDVLMREGFSTPTPIQAQGWPMALAGRNMVGVADTGSGKTLSFILPA 119

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +     P   P+AL +APTRELA Q+        + + +      GG     + 
Sbjct: 120 IVHINNQ-PLLRPGDGPIALVLAPTRELAQQIAEVAHKYGSSSRIKTTCVFGGAPKRGQA 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  +++GTPGRL D +  +  N+     +VLDEAD MLD+GF   +  I+     
Sbjct: 179 MDLERGVELLIGTPGRLIDFLDTRKTNLRRCTYLVLDEADRMLDMGFEPQLRKIVSQIRP 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRD---N 233
            R+ LM+SAT    +  LA  +    V            +  I    +++   D+     
Sbjct: 239 DRQTLMWSATWPKEVQQLAYEFLGQDVIRVQIGAIGLSANHRIKQHVMIMQDYDKQRELF 298

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +++ +        I+F  T+ +V   T+ L    F  + + G+  Q+ER   L   RDG
Sbjct: 299 RLLDEIMRQKENKTIIFAETKRNVDDLTRNLRREGFPAMCMHGDKQQRERDTVLAEFRDG 358

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R  + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R G +G +         
Sbjct: 359 RHPILIATDVASRGLDVKDIKYVINFDYPNNSEDYVHRIGRTARGGGEGTAYTFFSSKNA 418

Query: 354 RRAERL---FREANVSVVWE 370
           R+A+ L     EA   +  E
Sbjct: 419 RQAKDLVSVLEEAKQEIPRE 438


>gi|5669638|gb|AAD46404.1|AF096248_1 ethylene-responsive RNA helicase [Solanum lycopersicum]
          Length = 474

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 31/375 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  + + + + G+   T +Q       L+ +D++  A+TGSGKT+A+ L  
Sbjct: 95  IKSFHDVGFPDYVLQEIEKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPA 154

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELAVQ+ +E     A + +      GGV    + 
Sbjct: 155 IVHVNAQ-PILDHGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKNTCIYGGVPKGPQV 213

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  IV+ TPGRL D +     N+  +   VLDEAD MLD+GF   I   +  +P 
Sbjct: 214 RDLQKGVEIVIATPGRLIDMLESNHTNLRRVTI-VLDEADRMLDMGFEPQIRKCISDTPD 272

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ +   +          +    +                            + N +V +
Sbjct: 273 RQTLYWSATWPKNVNHVSSACGNRLG------------------------DQKYNKLVKL 308

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + I+   T     + T+ L    +  +++ G+ SQ ER   L   + G++ + 
Sbjct: 309 LEDIMDGSRILIFRTLKGCDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 368

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATDVAARG+D+ D++ VI+ +   + E+ +HR GRTGRAG  G +         R A+ 
Sbjct: 369 TATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKD 428

Query: 359 ---LFREANVSVVWE 370
              +  EA   V  E
Sbjct: 429 LVNILEEAGQKVSPE 443


>gi|256860906|gb|ACV32355.1| vasa [Nibea mitsukurii]
          Length = 640

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 184/382 (48%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + + +A+++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 201 IMTFEEATLCESLRKAVAKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 260

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P  L +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 261 LQQLMADGVAASSFSELQEPEVLIVAPTRELINQIYMEARKFSYGTCVRPVVVYGGVSTG 320

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R++  G +++ GTPGRL D I    + +S L+  VLDEAD MLD+GF  D+      
Sbjct: 321 YQIREISRGCNVLCGTPGRLLDVIGRGKIGLSKLRYFVLDEADRMLDMGFEPDMRRLVGS 380

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + +   ++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 381 PGMPTKEHRQTLMFSATYPEDIQRMAADFLKTDYLFLAVGVVGGACSDVEQTFVQVTKFS 440

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 441 KREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQREREQALADF 500

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD+  V+  +L +N +  +HR GRTGR G  G +V     
Sbjct: 501 RSGKCPVLVATSVAARGLDVPDVLNVVSFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 560

Query: 351 N----MQRRAERLFREANVSVV 368
           +    + R    +  +A   V 
Sbjct: 561 DADGQLARSLVTILSKAQQEVP 582


>gi|255087406|ref|XP_002505626.1| predicted protein [Micromonas sp. RCC299]
 gi|226520896|gb|ACO66884.1| predicted protein [Micromonas sp. RCC299]
          Length = 620

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/503 (25%), Positives = 221/503 (43%), Gaps = 22/503 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   +     +SE GY  +T VQ   + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 119 KTFDSLTLSKQTMAGISELGYTRMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLIPSV 178

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F P +    + ++PTRELA+Q+    + L  K      + IGG +   E  
Sbjct: 179 ELLYH--AKFMPRNGTGVMVLSPTRELALQIYNVAQQLMKKHSQTHGLIIGGANRRAEAE 236

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++         LK   +DEAD MLD+GF +++  I+   PK
Sbjct: 237 KLVKGVNLLVATPGRLLDHMQNTKGFAFGSLKVFCMDEADRMLDIGFEEEMRTIVRMIPK 296

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
            R+ ++FSAT +  +  LA+   K    + +         + ++    +V    R   + 
Sbjct: 297 DRQTMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEKRFLLLF 356

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  +VF S+  SV    ++L      V  + G+  QQ R+            
Sbjct: 357 TFLKKNLKKKVMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRG 416

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R    KG ++  +       
Sbjct: 417 ILLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGTEGKGRALLFLIPEELGF 476

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + L + A V +     P  + A  +   +++++   +L     D  +   +    H  +
Sbjct: 477 LKYL-KAAKVPLNEYEFPQKKIANVQSQLEKLVEKNYYLHQSARDAYRSYILAYNSHTLK 535

Query: 415 KI--AAGFLRIHRA---GLCAPEEIT---PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            +        +  A   G   P ++         +GR R  D     +  GGS    +  
Sbjct: 536 DVYNVHELNLMSVALSFGFHRPPKVQLNLDSKAANGRKRIGDGKGMERAKGGSDYRRQKG 595

Query: 467 SWFSLSV----GSKQKAEARWLM 485
           +    S     G +  ++ R  +
Sbjct: 596 TGHGFSADNPYGKRDSSDRRQFV 618


>gi|145634056|ref|ZP_01789767.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
 gi|145268500|gb|EDK08493.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
          Length = 415

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/393 (29%), Positives = 201/393 (51%), Gaps = 13/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F ++P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   QLFSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTREL+VQ+  + E+L   +G+  ++  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYPHPRALILAPTRELSVQISNDAEFLSKASGLNTSLAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV ARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +       
Sbjct: 309 LVATDVVARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP 368

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            +      S+          + + + + +L+ P
Sbjct: 369 AIEEYIGHSIP---------VSQYETEALLELP 392


>gi|258405872|ref|YP_003198614.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257798099|gb|ACV69036.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 497

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 138/427 (32%), Positives = 219/427 (51%), Gaps = 11/427 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
              E++   I EA    G+ +L  VQ   +   LR  D++V ++TGSGKT AF L +   
Sbjct: 19  TSLEDLSPRIQEACRSAGWSSLAPVQARSIPVLLRGDDLMVQSRTGSGKTGAFLLPMLER 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +        A  AL + PTRELA QV  E + L+  +G+  A   GGV    +   L
Sbjct: 79  LNPDQA------ACQALILVPTRELARQVHAEAQTLFKGSGLRTAAVFGGVGYKEQFDAL 132

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GAH+VVGTPGR+ DH+         L+ +V+DEAD ML +GF  D+  I    P+   
Sbjct: 133 REGAHVVVGTPGRILDHLLKGSFATKKLRILVMDEADRMLSMGFYQDMVQIRGYLPQSVE 192

Query: 182 MLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
               FSAT    +  L+  +  D   ++++S+    ++I++   +V    R+ +++ IL 
Sbjct: 193 SSYLFSATFPSHVLRLSSQFLIDPGFLSLSSDTLNVAEIEHSYYVVPAVQRERSLLRILE 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y    +A++FC+T++ V   T VL         L+ +L Q +R   L  ++ G  R+ +A
Sbjct: 253 YLNPVSALIFCNTKSDVQFVTTVLQRFGLDADQLTSDLRQNKRDQVLGRIKAGNLRLLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+PDL  VI  + S +PE  +HR+GRTGRAG  G +V ++    + +  ++ 
Sbjct: 313 TDVAARGIDIPDLSHVIQYQPSEDPELYVHRAGRTGRAGASGEAVTLVAGMEKIKLNQVA 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQR---ILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKI 416
           ++  + +  +  PS E + +   QR   IL+  L   D +Q +  K    L  +      
Sbjct: 373 KKFRIPLQEQELPSEETVNDMVGQRLTAILEAELRSRDLVQQERAKRFVKLARELGQNDD 432

Query: 417 AAGFLRI 423
           AA  L +
Sbjct: 433 AAMLLGM 439


>gi|241747700|ref|XP_002414349.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215508203|gb|EEC17657.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 519

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 201/389 (51%), Gaps = 10/389 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P+   E    + +   + +Q       L  +D++  AQTGSGKT+A+ L  A   +++
Sbjct: 100 NFPEPCRELFRSKNFTEPSPIQAQAWPVVLGGRDLVGIAQTGSGKTLAYVLPAAIH-MSD 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +      P+ + +APTREL  Q+ +   EW      +  A   GGVS   +   LQ G
Sbjct: 159 QPQPERDEGPIGVVLAPTRELVQQISQVAYEWCGGAFRLKGAPVYGGVSKGPQIARLQGG 218

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI + TPGRL D +    +N+     +VLDEAD MLD+GF   I  I+D +   R+ +M
Sbjct: 219 AHICIATPGRLLDILETGAINLLRCSYLVLDEADRMLDMGFEPQIRKIVDQTRPDRQTVM 278

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----SDRDNAIVNILR 240
           +SAT    +  LA+ +  D V++ + SE+   +    + V V       ++    +  + 
Sbjct: 279 WSATWPSEVRDLAEEFLTDHVQITVGSEDLCANHNIRQVVHVCQGFEKEEKLLETLREIN 338

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  ++F +T+A V    + L ++ F+ VA  G+LSQ +R  AL   R G+  + +A
Sbjct: 339 AEGDQRTLIFVATKARVVTIVQNLYKNGFRAVATHGDLSQNKRDIALDRFRSGKTPILVA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+ D++ VI+ +     E+ +HR GRTGR+ R G ++ +   +   +A++L 
Sbjct: 399 TDVAARGLDVSDIKYVINYDYPDTSESYVHRIGRTGRSNRSGTAITLFTPDNAGQAKQLV 458

Query: 360 --FREANVSVVWEPAPSVE-AIRERDAQR 385
              +EA   V  E    V+  + ++ A R
Sbjct: 459 SVLQEAKQEVNPELLELVDRQVSQKFANR 487


>gi|165933600|ref|YP_001650389.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
 gi|165908687|gb|ABY72983.1| ATP-dependent RNA helicase [Rickettsia rickettsii str. Iowa]
          Length = 414

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 209/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 5   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 64  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFMQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 235 GHREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D    ++     K+  D
Sbjct: 355 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFD 402


>gi|195326619|ref|XP_002030023.1| GM24798 [Drosophila sechellia]
 gi|194118966|gb|EDW41009.1| GM24798 [Drosophila sechellia]
          Length = 786

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 273 FDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQ 331

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 332 KQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 391

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFS
Sbjct: 392 IIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFS 451

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 452 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 511

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 512 GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 571

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 572 ARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 628


>gi|324517616|gb|ADY46875.1| Eukaryotic initiation factor 4A-III [Ascaris suum]
          Length = 405

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +++  
Sbjct: 33  TFDDMGLREELIRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQAQSGTGKTATFSISVLQ 92

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +      AL ++PTRELA Q+ + +  L     V    CIGG +V  + R 
Sbjct: 93  GLN------TTIRETQALILSPTRELASQIQKVILALGDYMNVQCHACIGGTNVGEDIRK 146

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    ++ +VLDEADEML+ GF++ +  I    P   
Sbjct: 147 LDYGQHVVSGTPGRVFDMIRRRNLRTRSIRMLVLDEADEMLNKGFKEQLYDIYRYLPPGA 206

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  + +R+ +  +      I    V +     + + + ++ 
Sbjct: 207 QVVLLSATLPHEILEMTSKFMTNPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCDLY 266

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V    + L E  F V A+ G++ Q+ER   ++  R G +R+ I
Sbjct: 267 DTLTITQAVIFCNTRRKVDWLAEKLKEANFTVSAMHGDMEQKERDAIVKEFRSGTSRLLI 326

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + LV++ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 327 STDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDI 386

Query: 360 FREANVSVVWEPAPSVEAI 378
            +     +   P    + I
Sbjct: 387 EQYYATQIDEMPMNVADLI 405


>gi|226496647|ref|NP_001140760.1| hypothetical protein LOC100272835 [Zea mays]
 gi|194700960|gb|ACF84564.1| unknown [Zea mays]
 gi|195623902|gb|ACG33781.1| ATP-dependent RNA helicase dhh1 [Zea mays]
          Length = 499

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 169/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 127 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 186

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 187 IDPEK------NAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 240

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 241 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQ 300

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y      +N+  E             V    + + +  +   
Sbjct: 301 LLMFSATFPVTVKEFKDKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 360 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 420 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQ 479

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 480 ELGTEIKTIP-PQID 493


>gi|40788956|dbj|BAA04879.2| KIAA0111 [Homo sapiens]
          Length = 412

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 40  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 99

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 100 CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 153

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 154 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 213

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 214 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 273

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 274 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 333

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 334 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 393

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 394 EQYYSTQIDEMPMNVADLI 412


>gi|332028827|gb|EGI68856.1| ATP-dependent RNA helicase bel [Acromyrmex echinatior]
          Length = 704

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 198/393 (50%), Gaps = 24/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 212 ITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIERRDVMACAQTGSGKTAAFLVPI 271

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +     R  P  A         PL L +APTRELA Q+  E      ++ +  AV  
Sbjct: 272 LNQIYESGPRPPPPQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVY 331

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I
Sbjct: 332 GGSNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRFLVLDEADRMLDMGFEPQI 391

Query: 170 EFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I+           + LMFSAT    I  LA+++  + + + +        +I  + V 
Sbjct: 392 RRIVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVW 451

Query: 226 VALSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           V   D+ + ++++L+     +       +VF  T+       + LA   + V ++ G+ +
Sbjct: 452 VEEHDKRSYLLDLLQASNFSDPTAESLTLVFVETKKGADMLEEYLASMGYPVTSIHGDRT 511

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER  AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G
Sbjct: 512 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMG 571

Query: 340 RKGMSVFVI---PQNMQRRAERLFREANVSVVW 369
             G++         N+ R    L  EAN  +  
Sbjct: 572 NLGLATSFFNHKNHNLVRDLVSLLIEANQELPP 604


>gi|260776311|ref|ZP_05885206.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607534|gb|EEX33799.1| ATP-dependent RNA helicase RhlE [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 483

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 210/461 (45%), Gaps = 14/461 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   L  +N
Sbjct: 8   LSAPLLKAIDDQGYDKPSPIQEQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILERL--DN 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL + PTRELA QV   +        +   V  GGV ++ +   L+ G  
Sbjct: 66  GTRVKGNHVRALVLTPTRELAAQVQENVFKYSRYQRLTSNVVFGGVKINPQMTKLRKGTD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +N S L+ +VLDEAD MLD+GF  DI  IL   P+KR+ L+FS
Sbjct: 126 VLVATPGRLLDLYQQNAINFSQLEVLVLDEADRMLDMGFIRDIRKILALLPEKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK    D V V++  EN     I+          +   +V +++    + 
Sbjct: 186 ATFSAEIRELAKGLVNDPVEVSVNPENSTAVTIEQSIYPADKRKKAPMLVKLIKDGDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R +  L +       + G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 246 VLVFSRTKHGANRLSHYLNDQGITAAPIHGNKSQGARTKALADFKSGEVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ EL    E+ +HR GRTGRAG  G ++ ++          + R     
Sbjct: 306 GIDIPQLPQVVNFELPHVAEDYVHRIGRTGRAGEVGKAISLVEAAEASELFGIER----- 360

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++ +  P +E    +    + +  L    I+  + K        H          +    
Sbjct: 361 LIQQVLPRLELEGYKPVNVLPESKLDTRPIKPKKPKKPKKPKVDH-------ADGKRSGD 413

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +         G ++   D      GG  +D   G+S
Sbjct: 414 NARGHKPAGKNKRHFGHNKPNGDGSKSNNGGKRKDGSSGNS 454


>gi|159489124|ref|XP_001702547.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158280569|gb|EDP06326.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 600

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 185/386 (47%), Gaps = 18/386 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++  P  + E +    +   T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 143 VHSFEDLQLPACMMENIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPI 202

Query: 59  ASTLLAEN-----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            +++L +       R S  + P AL +APTREL  Q+  E       TG+   V  GG  
Sbjct: 203 IASMLMKGYQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAP 262

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + RDL+ G  I+V TPGRL D I    + +S +  + LDEAD MLD+GF   I  I+
Sbjct: 263 APNQLRDLERGCDILVATPGRLSDFIERGRVGLSSIVFLCLDEADRMLDMGFEPQIRRIV 322

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +             MFSAT    I  LA ++  + V + +         I      V   
Sbjct: 323 EQEDMPPVGHRQTLMFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIVQHIEYVTPE 382

Query: 230 DRDNAIVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           ++ N +++    +         +VF  T+       ++L  +     ++ G+ SQ++R  
Sbjct: 383 EKQNTLLDLISTVEVSRRQGLTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREM 442

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  + G+  V +ATDVAARG+D+P +  VI+ +L  + ++ +HR GRTGRAG KG++ 
Sbjct: 443 ALRSFKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLAT 502

Query: 346 FVIPQNM---QRRAERLFREANVSVV 368
                +     R    +  E N +V 
Sbjct: 503 AFFTDSDAPLARSLVEVLTETNQTVP 528


>gi|47086809|ref|NP_997777.1| probable ATP-dependent RNA helicase DDX5 [Danio rerio]
 gi|37362204|gb|AAQ91230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Danio rerio]
          Length = 518

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 187/384 (48%), Gaps = 9/384 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +K  E N P+ + + ++++ + + T +Q       L  KD++  AQTGSGKT+++ L   
Sbjct: 96  VKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAI 155

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +         P+ L +APTRELA QV +        + +      GG     + R
Sbjct: 156 VHINHQ-PFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPQGPQIR 214

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     
Sbjct: 215 DLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPD 274

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAI 235
           R+ LM+SAT    +  LA+++ K+ +++N      S N     I          D+   +
Sbjct: 275 RQTLMWSATWPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRL 334

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+      T+ +    +  + + G+ +QQER   L   + G+A
Sbjct: 335 LEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKA 394

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRT R+ + G +      N  ++
Sbjct: 395 PILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQ 454

Query: 356 AERL---FREANVSVVWEPAPSVE 376
           A  L    REA+ ++  +     E
Sbjct: 455 AHDLVSVLREAHQAINPKLIQMAE 478


>gi|74211590|dbj|BAE26522.1| unnamed protein product [Mus musculus]
          Length = 851

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 140/586 (23%), Positives = 244/586 (41%), Gaps = 45/586 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            + +  ++ ++A +       PS   I +   +DA R+L D +   +I   ++    ++ 
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLL-DSVPPTAISHFKQSAEKLIE 675

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            K D E +AA    I  A       +            R       +    ++  +    
Sbjct: 676 EKGDVEALAAALAHISGATSVDQRSLINSQAGFVTMILRCSIEMPNISYAWKELKE---- 731

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
               +G    A+ + ++  L    G+                 +V  + V  ++      
Sbjct: 732 ---QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDS 772

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           +  QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 773 RRWQLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 816


>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
 gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
          Length = 581

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/382 (31%), Positives = 189/382 (49%), Gaps = 15/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +P+ +   L E+G  + T +Q   L   L  +D++  A TGSGKT+AF L L
Sbjct: 142 IRSFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPL 201

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E +R        P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 202 IMLALKEEERSRLKGGEGPVGLILCPSRELAKQTFDVIEEFVSMVNSSRCCHLRAMLCIG 261

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  +   ++ G HIVV TPGRL D +  K +N+   K + LDEAD + D GF DDI 
Sbjct: 262 GTGMRSQLEAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLTLDEADRLCDSGFEDDIR 321

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            ++D    +R+ L+FSAT+   I   A+      V VN+A       D+  +   V    
Sbjct: 322 KVMDHLKFQRQTLLFSATMPRKIQEFARGALVKPVVVNVARAGAASLDVVQQVEFVKQEA 381

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            +   +           ++FC ++  V    + L     +VV++ G   Q+ER +A+   
Sbjct: 382 -EMVYLLECLQQTPPPVLIFCESKGEVDSIYEYLVLKGVEVVSIHGGKDQEERQDAITKF 440

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           + GR  V +ATDVA++G+D P ++ VI+ ++ S  EN +HR GRTGR G+ G++   I  
Sbjct: 441 KQGRKDVLVATDVASKGLDFPSIQHVINYDMPSEIENYVHRIGRTGRCGKTGIATTFINS 500

Query: 349 --PQNMQRRAERLFREANVSVV 368
              ++     + L REA   V 
Sbjct: 501 RQSESTLLDLKYLLREAKQKVP 522


>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 442

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 121/372 (32%), Positives = 184/372 (49%), Gaps = 3/372 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   +  A+SE GY   + +Q   +   L+  D+L  AQTG+GKT  F L L 
Sbjct: 1   MTFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +  + S      AL + PTRELA QV            +   V  GGVS+  +  
Sbjct: 61  QRLSEKPAQKSRPI--RALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQIT 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL DH+  K +++S ++ +VLDEAD MLD+GF  DI  IL   P +
Sbjct: 119 TLRQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQ 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA    K    + +A  N     +D     +    +   + +++
Sbjct: 179 RQNLLFSATFSDEIKRLADGLLKSPTLIEVARRNTAAEQVDQAIYRIDKGLKRALLSHLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  +VF  T+   +R    LA+      A+ G  SQ  R+ AL   + G+ RV +
Sbjct: 239 SGQNWQQVLVFTRTKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVLV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++  +     ++   +
Sbjct: 299 ATDIAARGLDIEQLPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFVCAEEHKQLHDI 358

Query: 360 FREANVSVVWEP 371
                  +  + 
Sbjct: 359 ESLLKRRIPLQE 370


>gi|224129414|ref|XP_002328711.1| predicted protein [Populus trichocarpa]
 gi|222839009|gb|EEE77360.1| predicted protein [Populus trichocarpa]
          Length = 587

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 196/396 (49%), Gaps = 15/396 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +G V  T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 141 IKHFKDMRFPEPILKMLKAKGIVQPTPIQVQGLPVILTGRDMIGIAFTGSGKTLVFVLPL 200

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E       P   P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 201 IMIALQEEIMMPIMPGEGPVGLIVCPSRELARQTYEVVEEFLIPMRAAGYPELRPLLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HIVV TPGRL D +  K +++ + + + LDEAD ++DLGF DDI 
Sbjct: 261 GVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMSLDNCRYLTLDEADRLVDLGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 321 EVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       +VFC  +A V    + L     + VA+ G   Q+ER  A+   
Sbjct: 381 KIVYLLECLQKTPPP-VLVFCENKADVDDIHEYLLLKGVEAVAVHGGKDQEEREYAISSF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERD 382
           N         + L +EA   +    A   + + + D
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDGD 535


>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 408

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 131/404 (32%), Positives = 205/404 (50%), Gaps = 14/404 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L
Sbjct: 1   MNNFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRE 117
            + LL E +  S      AL I PTRELA QV  E+  L    + + VA+ IGG  + R+
Sbjct: 61  VAKLLNEPNTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              LQ    IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   P
Sbjct: 115 LNQLQKKPQIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ LMFSAT+   I  LA+ Y     R+++  E      I    V  + S++   +V 
Sbjct: 175 KIRQTLMFSATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVT 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L        I F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++
Sbjct: 235 QLCQREGSIII-FVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++  +    +RR  
Sbjct: 294 MVATDVASRGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLP 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            L  +                ++R+++++ + P  L +  G +K
Sbjct: 354 ALADKEG----ELNFDCSVQFKKRNSKKVFKRPSTLKTKYGRKK 393


>gi|39996017|ref|NP_951968.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
 gi|39982782|gb|AAR34241.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens PCA]
          Length = 447

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 185/369 (50%), Gaps = 7/369 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F      +   ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKSF-GFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL IAPTRELA Q+      L  +T +      GGV V+ + + 
Sbjct: 62  RLQQGERGR-----VRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VV  PGRL DHI    +++S L+ +VLDEAD+M D+GF  DI  +L   P +R
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I TLA++   D V V + +     +   +    V    +   ++ +LR
Sbjct: 177 QTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVTV-AHALYPVEQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G +  ++  +       + 
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIE 355

Query: 361 REANVSVVW 369
           R     +  
Sbjct: 356 RSLGAPIER 364


>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 511

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +   
Sbjct: 44  DPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGPA 103

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 104 VSSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 162

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 163 VATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSAT 222

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I T+A +  +  V ++++  N   S I    V V   ++ +  ++++  +   +A+
Sbjct: 223 FTDDIRTMAASILRSPVNISVSPPNVTGSKIKQWVVTVDKRNKPDLFMHLVAENNWDHAL 282

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 283 VFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 342

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 343 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGQTLR 402

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 403 REEEPGFEA 411


>gi|301612896|ref|XP_002935944.1| PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 1049

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 5/386 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 382 ILNSLKKHAYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LE 440

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 441 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 500

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 501 TPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSA 560

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T   A+  LA+      + V +   +   SD++   +++    +   ++ +L ++  K A
Sbjct: 561 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLELLGHYQEKGA 620

Query: 248 -IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 621 VIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGVCKLLVATSVAAR 680

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LVI+    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 681 GLDVKQLILVINYACPNHYEDYVHRAGRTGRAGNKGYAFTFITEDQARYAGDIIKALELS 740

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLF 392
               PA   +   E   Q+  +  + 
Sbjct: 741 GTAVPAELEQLWNEFKEQQKAEGKII 766


>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
 gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
 gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           3_1_19]
 gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
           20_3]
          Length = 426

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   DLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRERRDL 121
           +    P  A  A+ +APTRELA Q+ ++++        V AV + G    ++  +++R L
Sbjct: 64  SKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   +
Sbjct: 124 EMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+ P I TLAK   KD   V   + +R    I   A +     +   + ++   
Sbjct: 184 TIMFSATMPPKIRTLAKTILKDPEEV-KIAISRPPESIMQTAYICYDPQKLKILQDLFTQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F S++  V      L    F V A+  +L Q +R   ++  + G   + +AT
Sbjct: 243 SRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DV ARGID+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+ 
Sbjct: 303 DVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIE 362

Query: 361 REANVSVVWEPA 372
                 V   P 
Sbjct: 363 DFLEKEVYKIPV 374


>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Pichia pastoris GS115]
 gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 478

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 194/379 (51%), Gaps = 8/379 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F  +P+ I EA  +  Y   T +Q   +   L+ +D++  AQTGSGKT AF + +  
Sbjct: 74  FNDFGLVPE-ILEACEKLKYTKPTPIQAESIPYALKGRDIIGLAQTGSGKTAAFAIPVLQ 132

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +   F          +APTRELA Q+    + L +  G+     +GG+ +  + +D
Sbjct: 133 SLYEQATPF------FCCVLAPTRELAYQIKETFDSLGSGMGLRSVCIVGGMDMIDQAKD 186

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H++V TPGRL DH+          LK +++DEAD +LDL F   I+ +L   P++
Sbjct: 187 LMRKPHVIVATPGRLMDHLENTKGFSLKALKYLIMDEADRLLDLEFGPAIDKVLKLIPRE 246

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  I  L +    D ++V+++S+      +    ++V    ++  ++ +L
Sbjct: 247 RSTYLFSATMTNKIEKLQRASLVDPIKVSVSSKYSTVDSLIQSLMVVPDGYKNTFLIYLL 306

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  K+ I+F  T A   R   +     F  + L G+L+Q +R  AL   +     + +
Sbjct: 307 NKYQNKSIIIFTRTCAHAQRTALLARLMDFSAIPLHGQLNQSQRLGALNKFKARERTILV 366

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P +++VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       R+
Sbjct: 367 ATDVAARGLDIPMVDVVINFDIPTDSKAYIHRVGRTARAGRSGRSISLVTQYDLELILRV 426

Query: 360 FREANVSVVWEPAPSVEAI 378
                + +  +  P  E +
Sbjct: 427 ESVLGMKLPKDVPPRDEIL 445


>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
 gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 616

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 193/393 (49%), Gaps = 19/393 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 178 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 237

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 238 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 297

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 298 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 357

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 358 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 417

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 418 LQKTPPP-VLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 476

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 477 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 536

Query: 355 RAERLFREANVSVVW------EPAPSVEAIRER 381
             + L +EA   +        +P    E I + 
Sbjct: 537 DLKHLLKEAKQRIPPVLAELNDPLDDEEIIAKE 569


>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 451

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 190/377 (50%), Gaps = 9/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   + + +    Y   T +QE  +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MNFTEFGLHPDLLDGVDAMNYKTATPIQEKAIPIILEGKDLIGIAQTGTGKTAAFILPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + ++   +    A+    L I PTRELAVQ+ + +E     TGV      GG       +
Sbjct: 61  NEIIESGE----ANFIQTLVIVPTRELAVQIDQVIEAYSYFTGVSSIAIYGGGDGKEFAQ 116

Query: 120 DLQ---NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +     +G  IV+ TPGRL  H+    +N S L+ +VLDEAD M+D+GF+ D+  I+   
Sbjct: 117 EKNALVSGVDIVIATPGRLISHLNMGYVNFSKLRFLVLDEADRMMDMGFQPDLMRIIGKI 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR+ L+FSAT+  ++                 + ++    +  RA +V    +   + 
Sbjct: 177 PQKRQTLLFSATMPESV-MKLARQLTHNAESVSIALSKPAEGVTQRAYVVYEEQKLQLVT 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    +  +VFCS++ASVS     L      V  +S ++ Q +R   +   R+ +  
Sbjct: 236 ELLKDRKGQRIVVFCSSKASVSSLYSKLHRKNLSVGQMSSDVEQDQREETMLAFRNSKID 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDV +RGID+  ++LV++ ++  +PE+ +HR GRT RA RKG ++ ++    Q R 
Sbjct: 296 IIVATDVISRGIDVDGIDLVVNYDVPRDPEDYVHRVGRTARAERKGEAITLVSPGDQLRF 355

Query: 357 ERLFREANVSVVWEPAP 373
            R+ +  +  +     P
Sbjct: 356 RRIEKLIDKDIEKLGPP 372


>gi|323338408|gb|EGA79633.1| Dhh1p [Saccharomyces cerevisiae Vin13]
          Length = 448

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/359 (26%), Positives = 162/359 (45%), Gaps = 7/359 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + +QE  +   +  +D+L  A+ G+GKT AF +     +  + ++     
Sbjct: 2   GIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI---- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q  + +  L    G+   V  GG ++  +   L    HI+VGTPG
Sbjct: 58  --QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D    K  ++S     ++DEAD+ML   F+  IE IL   P   + L+FSAT    +
Sbjct: 116 RVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPXTHQSLLFSATFPLTV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                 +      +N+  E             V    + + +  +        AI+FC++
Sbjct: 176 KEFMVKHLHKPYEINLMEELTLKGI-TQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + +  +        + QQER+      R G+ R  + +D+  RGID+  +
Sbjct: 235 TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
            +VI+ +     E  LHR GR+GR G  G+++ +I  N +    ++ +E    +   PA
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 353


>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
          Length = 618

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 193/393 (49%), Gaps = 19/393 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 239

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQKTPPP-VLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 538

Query: 355 RAERLFREANVSVVW------EPAPSVEAIRER 381
             + L +EA   +        +P    E I + 
Sbjct: 539 DLKHLLKEAKQRIPPVLAELNDPLDDEEIIAKE 571


>gi|146323887|ref|XP_751498.2| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
 gi|91206842|sp|Q4WQM4|HAS1_ASPFU RecName: Full=ATP-dependent RNA helicase has1
 gi|129557486|gb|EAL89460.2| ATP-dependent RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159125568|gb|EDP50685.1| ATP-dependent RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 622

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/470 (24%), Positives = 214/470 (45%), Gaps = 14/470 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+++ G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 147 LSEKTLKAINDMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML--SA 204

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + ++PTRELA+Q+      L         + IGG +   E   L  G +
Sbjct: 205 LRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVN 264

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH++        +LK +V+DEAD +L++GF D++  I+   P + R  M 
Sbjct: 265 LLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTML 324

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 325 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 385 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICT 444

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +     + L 
Sbjct: 445 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVGFLKHL- 503

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +   
Sbjct: 504 KEARVPVVEFEFPANKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSLRSVFDV 563

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                +++ +    +      + L +   R +   +  +   GS+ + KG
Sbjct: 564 HKLDLVKVAKGFGFSTPPRIDIQLGASLSRDKKQQQQGRRSYGSQPHSKG 613


>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
           DEAD-box protein family [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 433

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 198/401 (49%), Gaps = 4/401 (0%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F   P+ + +AL E  Y  LT +Q A +    + KDVL SAQTG+GKT AF L +  
Sbjct: 3   FKSFSFAPE-LVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       S  +AP AL +APTRELA Q+    +     T + V    GGV+   +   
Sbjct: 62  KLF--ESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV TPGRL DHIR   L+++ +K +VLDEAD MLD+GF ++++ ++ S    R
Sbjct: 120 LKEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT   AI   A    K    V +   N   S + +    V    +   +  ++ 
Sbjct: 180 QILLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIG 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF + + +       L           G+ SQ  R  AL+  ++G+ RV +A
Sbjct: 240 KKNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGID+  L  VI+ +L    E+ +HR GRTGRAG++G ++  + +  +     + 
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFEIE 359

Query: 361 REANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDE 400
                 +          + RE    +I + P  L   + ++
Sbjct: 360 TLIGQKIKRVYLEGYAVSNREVLIDKIGKKPAHLRRTRANK 400


>gi|189053928|dbj|BAG36435.1| unnamed protein product [Homo sapiens]
          Length = 648

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDP 390
           +   AN S+  E     E      R+R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFEAHQRKREMERKMERP 640


>gi|312218365|emb|CBX98311.1| similar to ATP-dependent RNA helicase dhh1 [Leptosphaeria maculans]
          Length = 511

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 52  FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 111

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 112 VNPKISK------TQALILVPTRELALQTSQVCKMLGKHLGINVMVSTGGTGLKDDIIRL 165

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S  +  V+DEAD++L   F   +E +L   PK R+
Sbjct: 166 SDPVHIIVGTPGRILDLAGKGVADLSACQTFVMDEADKLLSPEFTPVVEQLLGFHPKDRQ 225

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    +      +N+  E             V    + + +  +   
Sbjct: 226 VMLFSATFPIVVKSFKDKHMNSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFNK 284

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 285 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 344

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 345 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRFNLYRIEQ 404

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 405 ELGTEI--QPIPQV 416


>gi|327481375|gb|AEA84685.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 192/378 (50%), Gaps = 7/378 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+   + + + +A++E  +V  T VQ A + P L  +D+ V+AQTGSGKT AF L + +
Sbjct: 1   MFDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ +     P     AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 61  RLIGDA---QPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAM 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGRL +H+    L +  ++ +V+DEAD MLD+GF +D++ ++    K++
Sbjct: 118 LRKVPDVLIGTPGRLIEHLNAGNLILKDVEVLVIDEADRMLDMGFAEDMQRLVGECEKRQ 177

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT   A     +AK                  S           + ++  +  +
Sbjct: 178 QTLLFSATSGGAGLREMVAKVLNDPLHLQLNRVSELNESTRQQIITADDPAHKEKLVHWL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A++F +TRA   R    L     +V  L GE  Q+ER  A++ ++ G  +V 
Sbjct: 238 LANETYQKAVIFTNTRAQADRLYGHLVAGDIKVFVLHGEKDQKERKLAIERLKQGGVKVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       
Sbjct: 298 VATDVAARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSS 357

Query: 359 LFREANVSVVWEPAPSVE 376
           + R             ++
Sbjct: 358 IERYLKQRFEKRVIKGLK 375


>gi|126654509|ref|XP_001388425.1| ATP-dependent RNA helicase [Cryptosporidium parvum Iowa II]
 gi|126117365|gb|EAZ51465.1| ATP-dependent RNA helicase, putative [Cryptosporidium parvum Iowa
           II]
          Length = 406

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 173/371 (46%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  KD+L  A+ G+GKT AF + L   
Sbjct: 35  FEDYFLKRELLMGIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLEK 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + +          L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 95  INTKKNII------QGLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRL 148

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  H++VGTPGR+ D    K  N+S     ++DEAD++L   F+  IE +++  PK+R+
Sbjct: 149 NNPVHVLVGTPGRILDLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQ 208

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +      Y  +A  +N+  E             V    + + +  +   
Sbjct: 209 ILLYSATFPVTVKGFKDKYLANAHEINLMDELTLKGV-TQYYAFVEEKQKLHCLNTLFSK 267

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E       +   + Q  R+      R+G  R  +++
Sbjct: 268 LQINQAIIFCNSVTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSS 327

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 328 DLITRGIDIQSVNVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIEK 387

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 388 ELATEISPIPA 398


>gi|25809054|gb|AAN74635.1| DEAD box RNA helicase [Pisum sativum]
 gi|40950574|gb|AAR97917.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQKFYNV 400

Query: 366 SVVWEPAPSVE 376
            +   P+   E
Sbjct: 401 LIEELPSNVAE 411


>gi|8216985|emb|CAB92442.1| DEAD-box protein [Homo sapiens]
 gi|12053019|emb|CAB66685.1| hypothetical protein [Homo sapiens]
 gi|119569155|gb|EAW48770.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDP 390
           +   AN S+  E     E      R+R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFEAHQRKREMERKMERP 640


>gi|302839218|ref|XP_002951166.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
 gi|300263495|gb|EFJ47695.1| DEAD-box RNA helicase, ATP-dependent, cytoplasmic [Volvox carteri
           f. nagariensis]
          Length = 406

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 176/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 34  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVLER 93

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +          S   AL + PTRELA+Q  +  + L     V V V  GG S+  +   L
Sbjct: 94  VDPTR------SVIQALLLVPTRELALQTAQVCKELAKYLNVEVMVTTGGTSLKDDIMRL 147

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIVV TPGR+ D        ++  K +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 148 YQTTHIVVATPGRVVDLAGKGVARLNECKMLVMDEADKLLSPEFQPVVEQLIGFLPEDRQ 207

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +    + + +    +N+  E             V    + + +  +   
Sbjct: 208 IMLYSATFPVTVKAFKEKFLRKPYIINLMEELTLKGV-TQYYAFVEEKQKVHCLNTLFSK 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 267 LRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVSS 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I  + +    ++ +
Sbjct: 327 DLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIEQ 386

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   PA   E +
Sbjct: 387 ELGTEIKPIPAQIEEKL 403


>gi|260774368|ref|ZP_05883282.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
 gi|260610495|gb|EEX35700.1| ATP-dependent RNA helicase RhlB [Vibrio metschnikovii CIP 69.14]
          Length = 433

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LHPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   +Q G 
Sbjct: 76  EAEGRKPNQPRAIIMAPTRELAIQIYNDAESLIATTGIKTALAYGGESYDKQLAKIQEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQKAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V + +  +    I       +   +   +  I+    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEATQKTGHRIKEELFYPSNEHKMALLQTIIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDKAIVFANTKHRCEQVWGSLAADGHRVGLLTGDVPQKKRERILEQFTQGELDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDSEDYVHRIGRTGRAGESGSSISFACEEYAVNLPAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 EHSIP 380


>gi|168043479|ref|XP_001774212.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674480|gb|EDQ60988.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 584

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/391 (29%), Positives = 189/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++   + E +    Y   T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 135 VNTFAEIDLGAALNENIRRCKYTKPTPVQRHAIPISLNGRDLMACAQTGSGKTAAFCFPI 194

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++       P       PLAL ++PTREL  Q+  E +    +TG+ V VC GG  V
Sbjct: 195 IAGIMRNTPPGRPRGGRKALPLALILSPTRELTSQISDEAKKFAYQTGIRVVVCYGGAPV 254

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H + R+L+ G  I+V TPGRL D +    +++S ++ + LDEAD MLD+GF   I  I++
Sbjct: 255 HNQLRELERGVDILVATPGRLSDLLERARVSLSMVRYLTLDEADRMLDMGFEPQIRRIVE 314

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  +D
Sbjct: 315 QMDMPPAGERQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTELIVQRVEYVQDAD 374

Query: 231 RDNAIVNILRYH-------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE---LSQ 280
           + + +++++               +VF  T+         L    F    + G+      
Sbjct: 375 KRSMLMDLIHAQSALAPPGQTSLTLVFVETKKGADALEDWLCRMGFPATTIHGDRKVFPT 434

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           QER +AL+  R G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+
Sbjct: 435 QEREHALRSFRTGVTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 494

Query: 341 KGMSVFVIPQNMQ---RRAERLFREANVSVV 368
            G++     +  Q   R    L  E++  V 
Sbjct: 495 SGVATAFFNEKDQSLARSLTELMTESSQEVP 525


>gi|153009469|ref|YP_001370684.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561357|gb|ABS14855.1| DEAD/DEAH box helicase domain protein [Ochrobactrum anthropi ATCC
           49188]
          Length = 464

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 193/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 25  ILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 84

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 85  RPKTA-RALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLI 143

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++   R+  +FSAT+
Sbjct: 144 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSDRQTALFSATM 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA +   D VRV +A +    ++I      V   ++   +  +L     ++ IV
Sbjct: 204 PKEIASLAGSLLHDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIV 263

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    ++V A+ G  SQ  R  AL   RDG  R+ IATD+AARGID
Sbjct: 264 FTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGID 323

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 324 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESKLRAVERVTRNKLP 383

Query: 369 WEPAP 373
            + AP
Sbjct: 384 IKDAP 388


>gi|312081503|ref|XP_003143055.1| ATP-dependent helicase DDX48 [Loa loa]
 gi|307761780|gb|EFO21014.1| ATP-dependent helicase DDX48 [Loa loa]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +A+
Sbjct: 30  VHTFDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L              AL ++PTRELAVQ+ + +  L     V    CIGG +V  + 
Sbjct: 90  LQSLDIS------LRETQALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P 
Sbjct: 144 RKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 204 GAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V    + L E  F V ++ GE+ Q+ER   ++  R G +R+
Sbjct: 264 LYDTLTITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRL 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARG+D+P + LV++ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 324 LISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 383

Query: 358 RLFREANVSVVWEPA 372
            + +     +   P 
Sbjct: 384 DIEQYYATQIDEMPM 398


>gi|225426363|ref|XP_002271357.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 480

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 172/377 (45%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 108 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 167

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+          + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 168 IDPDNNVI------QVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRL 221

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 222 YQPVHLLVGTPGRILDLSKKGICILKDCSVLVMDEADKLLSPEFQPSVEQLIRFLPQNRQ 281

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      Y K    +N+  E             V    + + +  +   
Sbjct: 282 ILMFSATFPVTVKDFKDRYLKKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 341 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 401 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 460

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 461 ELGAEIKQIPPHIDQAI 477


>gi|294901517|ref|XP_002777393.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239885024|gb|EER09209.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 515

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 19/373 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   + + G+   + +Q       +  +D++  A+TGSGKT+AF L    
Sbjct: 118 TFEQAGFPDYILHEIKQAGFEKPSPIQVQGWPVAMSGRDMVGIAETGSGKTLAFLLPAIV 177

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ   E       + +      GG     + R 
Sbjct: 178 HINAQ-PYLQRGDGPIVLVLAPTRELAVQTQEECNRFGRSSRIRNTCVYGGTPRGPQARA 236

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L NG  I + TPGRL D +     N+  +  ++               I   +    +  
Sbjct: 237 LANGVEICIATPGRLIDFLESGRTNLRRVTYLIRK-------------ITSQVRPDRQTL 283

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                       +       +   + V   S    H+   Y  ++     +D     + R
Sbjct: 284 LWSATWPKEIQGLARDLCREEPVHINVGSMSLRASHNVTQYVDIVQDYEKKDKLKQLLER 343

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+ +    T++L    +  +++ G+  Q+ER   LQ  + G++ + IA
Sbjct: 344 IMDGSKIVIFTDTKRAADDLTRMLRMDGWPALSIHGDKKQEERDWVLQEFKSGKSPIMIA 403

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVA+RG+D+ DL  VI+ +     E+ +HR GRTGRAG KG +      +  + A+ L 
Sbjct: 404 TDVASRGLDVKDLRHVINYDFPGQIEDYVHRIGRTGRAGAKGSAYSFFTPDKYKLAKDLI 463

Query: 360 --FREANVSVVWE 370
              REA  +V  E
Sbjct: 464 GVLREAEQAVPPE 476


>gi|221480806|gb|EEE19233.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 657

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/395 (29%), Positives = 195/395 (49%), Gaps = 19/395 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++   PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +
Sbjct: 207 FRNFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPM 266

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L    R  + P   P  L + P+RELA Q      +            +     IG
Sbjct: 267 IMGALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIG 326

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G S   + ++++ G H +V TPGRL D +  + L +   + +  DEAD M+D+GF +++ 
Sbjct: 327 GCSAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVR 386

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +LDS   +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   +
Sbjct: 387 NVLDSFGHQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQEN 446

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +++ L+       ++FC  +  V    + L        A+ G L+Q+ERS A++  
Sbjct: 447 KLPYLLHCLQKTAPP-VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAF 505

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+GR  V + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +
Sbjct: 506 REGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNK 565

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRER 381
           N +       + L  EA   +     P +EA+  R
Sbjct: 566 NQEETVLLDLKALLIEAGQRMP----PFLEALDSR 596


>gi|289616811|emb|CBI56474.1| unnamed protein product [Sordaria macrospora]
          Length = 586

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/469 (25%), Positives = 216/469 (46%), Gaps = 13/469 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 120 NLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--S 177

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +   A+ + PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 178 SLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLGKGV 237

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +++++++DEAD +L++GF D++  I+   PK+ R  M 
Sbjct: 238 NLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQTML 297

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       V V+   +      +D   V+V    R   + + L+ 
Sbjct: 298 FSATQTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVVVDADKRFLLLFSFLKK 357

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      +      I T
Sbjct: 358 MQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNATQGTLICT 417

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +  N       L 
Sbjct: 418 DVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLAHL- 476

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V VV    P  + +  +   ++++    +L+    D  +      A H    +   
Sbjct: 477 KAAKVPVVEYDFPKSKILNVQSQLEKLIGQNYYLNQSAKDGYRSYLHAYASHSLRSVFDI 536

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                +++ ++   +      ++L S   R +   ++ +  G      +
Sbjct: 537 HKLDLVKVAKSFGFSTPPRVDITLASSMSRDKKQPQSRRAYGSQPKQNR 585


>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
 gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
          Length = 1424

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 179/376 (47%), Gaps = 10/376 (2%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            +K FE   +  ++ + + +  Y   T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 1012 VKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGSGKTAAFLLPI 1071

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             + +L +         P A+ ++PTRELAVQ+  E       + + + +  GG SV  + 
Sbjct: 1072 LNHILDKGYELEIGK-PQAIIMSPTRELAVQIFNEARKFAHNSYLKITIVYGGTSVKYQN 1130

Query: 119  RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +  G HI++ TPGRL D +    +     + VVLDEAD MLD+GF + +  I+     
Sbjct: 1131 ESITKGCHILIATPGRLLDFVERTFITFEDTRFVVLDEADRMLDMGFSESMRKIITHPTM 1190

Query: 179  KRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++     MFSAT    I  +A  + +D V V I       SD+      V   ++    +
Sbjct: 1191 RKEHQTLMFSATFPEEIQRMAGEFLRDYVFVTIGVIGGACSDVTQTIYEVDKFNKRAK-L 1249

Query: 237  NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              +   GA   IVF  T+          +E  F   ++ G+  Q +R  AL+  + G+ +
Sbjct: 1250 MEILRDGADGTIVFVETKRGADFLASFFSETEFPTTSIHGDRLQSQREQALREFKSGKMK 1309

Query: 297  VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
            V IAT VA+RG+D+ ++  VI+ ++ S  ++ +HR GRTGR G  G +      +  R  
Sbjct: 1310 VLIATSVASRGLDIKNVSHVINYDMPSTIDDYVHRIGRTGRVGNNGRATSFFDSDKDRAL 1369

Query: 355  --RAERLFREANVSVV 368
                 ++   +   V 
Sbjct: 1370 AGDLVKILEGSGQEVP 1385


>gi|18859541|ref|NP_571132.1| probable ATP-dependent RNA helicase DDX4 [Danio rerio]
 gi|2463519|dbj|BAA22535.1| vas [Danio rerio]
          Length = 716

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 181/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 276 IMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 335

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 336 LQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 395

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+GF  ++      
Sbjct: 396 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS 455

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  +++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 456 PGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQYS 515

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 516 KRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 575

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G   V +AT VAARG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V    P
Sbjct: 576 RLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNP 635

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 636 ESDTPLARSLVK 647


>gi|260831524|ref|XP_002610709.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
 gi|229296076|gb|EEN66719.1| hypothetical protein BRAFLDRAFT_202435 [Branchiostoma floridae]
          Length = 427

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 175/370 (47%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +DVL  A+ G+GKT A+ + +   
Sbjct: 38  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALLARDVLARAKNGTGKTGAYIIPVIER 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + +         AL + PTRELA+Q       L    G+   V  GG S+  +   L
Sbjct: 98  VELDKNHI------QALVLVPTRELALQTSSIATALGKHLGIRCMVTTGGTSLRDDIMRL 151

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HIV+ TPGR+ D ++     + H + +VLDE D++L   F+  ++ ++   P++R+
Sbjct: 152 YDTVHIVIATPGRILDLMKKGVAKMDHCQMLVLDEGDKLLSQDFKGMLDSVIGHLPRERQ 211

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    K +      +N+  E             V    + + +  +   
Sbjct: 212 ILLFSATFPLSVKDFMKRHLNKPYEINLMEELTLKGI-TQYYAFVQERQKVHCLNTLFSK 270

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++QQ R+      R+G  R  + +
Sbjct: 271 LQINQSIIFCNSTQRVELLAKKITELGYSCYYIHAKMNQQHRNRVFHDFRNGACRNLVCS 330

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +    ++ R
Sbjct: 331 DLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRYGHLGVAINLITFDDRYNLHKIER 390

Query: 362 EANVSVVWEP 371
           E +  +   P
Sbjct: 391 ELDTEIKPIP 400


>gi|195061826|ref|XP_001996076.1| GH14289 [Drosophila grimshawi]
 gi|193891868|gb|EDV90734.1| GH14289 [Drosophila grimshawi]
          Length = 746

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY + T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 306 LPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIVHINNQQ 365

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 366 P-LQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 424

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 425 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 484

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 485 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 544

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 545 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 604

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 605 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKSLV 664

Query: 360 --FREANVSV 367
              +EAN  +
Sbjct: 665 DVLKEANQEI 674


>gi|168038086|ref|XP_001771533.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 684

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 183/386 (47%), Gaps = 13/386 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   L   G+ + T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 151 SFEAVGFPPDMLRELQIAGFKSPTPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPAFL 210

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R +    P  L +APTRELA Q+  E       + +      GG     + RD
Sbjct: 211 HL--ERHRNNSRLGPTVLVLAPTRELATQIQDECVKFGRSSRITSTCVYGGAPKVPQLRD 268

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ GA IV+ TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R
Sbjct: 269 IERGADIVIATPGRLNDFLEVKRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVNEIPSRR 328

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +V   ++   +  I
Sbjct: 329 QTLMYTATWPKEVRKIAGDLLINPVQVNIGNTDELAANKSITQNVEVVVPYEKQRRLEQI 388

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + I+   +   +           F   A+ G+ SQ ER   L   R GR  + 
Sbjct: 389 LRSQEPGSKIIIFCSTKRMCDTLSRNLGRDFGAAAIHGDKSQSERDFVLSQFRTGRTPIL 448

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++     +   + A+ 
Sbjct: 449 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFSEQDGKYAKE 508

Query: 359 LFRE---ANVSVVWEPAPSVEAIRER 381
           L +    AN  V     P ++ I  R
Sbjct: 509 LIKVLEGANQKVP----PELKDIASR 530


>gi|325963995|ref|YP_004241901.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470082|gb|ADX73767.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 564

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 17/470 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  KSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +  
Sbjct: 97  QRVVGRDDAGYEKLAVPGAPQALVIVPTRELAVQVANDLQTASRKRNARIATIYGGRAYE 156

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+NG  +VVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++ +
Sbjct: 157 PQVEALKNGVEVVVGTPGRLIDLYKQKHLSLKNVKVVILDEADEMLDLGFLPDVETLIAA 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRD 232
           +P  R+ L+FSAT+   +  +A+ Y      +  A  +       DI          D+ 
Sbjct: 217 TPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKI 276

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+
Sbjct: 277 EVVARILQAKGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +  + 
Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             R   + +   +SV  EP  +  +     +  + +D    +  +G         LA  D
Sbjct: 397 MPRWGLINKALGLSVP-EPIETYSS-----SPHLYEDLDIPEGTKG-RLPRDKRTLAGVD 449

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            E +        +       +        GRDR   D  A + GG S D+
Sbjct: 450 AE-VLEDLGETGKKNARGGRDAGSSRDRDGRDRGSRDRGAKREGGRSGDS 498


>gi|152032523|sp|A4R8B5|HAS1_MAGO7 RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 587

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 224/471 (47%), Gaps = 16/471 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 118 NLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEML--R 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + ++PTRELA+Q+      L         + IGG +   E   L  G 
Sbjct: 176 SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMKHHSQTYGIVIGGANRRAEAEKLSKGV 235

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +L+++V+DEAD +L++GF D++  I+   PK+R+ ++F
Sbjct: 236 NLLIATPGRLLDHLQNTPFVFKNLRSLVIDEADRILEIGFEDEMRQIIKILPKERQSMLF 295

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+   +         E +++S +   +   V+     R   + + L+  
Sbjct: 296 SATQTTKVEDLARVSLRPGPLYLNVDEEKEYSTVEGLEQGYVVCEADKRFILLFSFLQKM 355

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  IVF S+  SV  + ++L     QV+ L G+  QQ+R+N      +      I TD
Sbjct: 356 KKKKIIVFFSSCNSVKYYAELLNYIDCQVLDLHGKQKQQKRTNTFFEFCNADRGTLICTD 415

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P + +HR GRT R   +KG S+  +  +       L +
Sbjct: 416 VAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTNKKGRSLMFLLPSEVGFLTYL-K 474

Query: 362 EANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DP 413
           +A V VV    P  S++ ++ +  ++++    +L+S   D  +      A H      D 
Sbjct: 475 QARVPVVEFDFPTKSIKNVQSQ-LEKLIGKNYYLNSSAKDGFRSYLHAYASHSLRSVFDI 533

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            K+    +         P     +     +D+     RA+         + 
Sbjct: 534 NKLDLAKVAKSFGFATPPRVDIQLGASMSKDKKAGGRRAYGSQPRQGGTYG 584


>gi|239946654|ref|ZP_04698407.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239920930|gb|EER20954.1| ATP-dependent RNA helicase RhlE [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 410

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 208/409 (50%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  L++ Y  + VR+ + + N+  ++I   ++ ++  ++ +  +    
Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAID 350

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D    +S     K+  D
Sbjct: 351 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNSFDSSRKRTFD 398


>gi|212541586|ref|XP_002150948.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068247|gb|EEA22339.1| ATP-dependent RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 584

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 205/472 (43%), Gaps = 16/472 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   EA+ E G+  +T +Q+  + P +  +DVL +A+TGSGKT+AF +     L   
Sbjct: 111 NLSERTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAFLIPAIELL--H 168

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    L ++PTRELA+Q+      L  K      + +GG +   E   L+ G 
Sbjct: 169 SLKFKPRNGTGVLILSPTRELALQIWGVARQLLDKHSQTHGIVMGGANRRAEAEKLEKGV 228

Query: 126 HIVVGTPGRLCDHIRGK----GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +++V TPGRL DH++        N+  L     D   E+        I  IL +  ++  
Sbjct: 229 NLLVATPGRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGERQTS 288

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILR 240
           +   + T                    +        D  +   V+     R   + + L+
Sbjct: 289 LFSATQTTKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFSFLK 348

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV+ ++++L      V+++ G+  QQ+R++      +    + I 
Sbjct: 349 RNLKKKIIVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGILIC 408

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P+++ V+  +   +P + +HR GRT R A  KG S+  +  +       L
Sbjct: 409 TDVAARGLDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFLTHL 468

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P  + I  +   ++++    +L+    +  +      A H    +  
Sbjct: 469 -KEAKVPVVEFEFPQKKIINVQSQLEKLISQNYYLNKSAKEGYRSYINAYASHSLRSVFD 527

Query: 417 --AAGFLRIHRA-GLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 ++I ++ G   P  +   +     RD+     R +       + FK
Sbjct: 528 VNKLDLVKIAKSFGFSTPPRVDITLGASMSRDKKVQGRRTYGSQPKQANRFK 579


>gi|104779961|ref|YP_606459.1| DEAD-box ATP dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
           [Pseudomonas entomophila L48]
          Length = 443

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-ANSVRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELQAVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   S +    V V    + +   ++LR    K  +
Sbjct: 189 FSDQIRMLAGLALNDPLSIEVSPRNAAASTVKQWLVPVDKKRKADLFCHLLRKQRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  +    +       + 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLASIETLIRQVLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 412

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 200/385 (51%), Gaps = 8/385 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE   +   +  A+++ GY   TS+Q+ ++   +  KD+L SA TG+GKT AF L +  
Sbjct: 1   MFEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     +   L + PTRELA QV  +   L   T +V  V  GG++   ++  
Sbjct: 61  FLLDYPRRH--PGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDKET 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  ++
Sbjct: 119 LEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRK 178

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT     I+  AK+   D V +  AS  ++   I     L   +    A++  +
Sbjct: 179 QSMLFSATLEGAGISRFAKDILNDPVELEAASSRKEQGKIHQWLHLADDAKHKYALLKHI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H  ++A+VF  TR  ++   ++L    F V  L GE+ Q +R+ ++   R G  ++ I
Sbjct: 239 LTHQVESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ ++  VI+ ++    +  +HR GRTGRAG KG ++ ++  +      ++
Sbjct: 299 ATDVAARGIDVENISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIAIVPKI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       ++ +R ++ +
Sbjct: 359 ERYTEQPLKRRV---IDELRPKNKE 380


>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
          Length = 448

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 121/413 (29%), Positives = 221/413 (53%), Gaps = 12/413 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            ++ +   +  +   T +Q+  +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 27  DILCKTCLDLKWKEPTRIQQEAIPLTLQGKDVIGLAETGSGKTAAFALPILQALLENPQR 86

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+  + + L +  GV   V +GG+ +H +   L+   HI+
Sbjct: 87  Y------FALILTPTRELAFQISEQFDALGSSIGVKTVVLVGGMDMHAQGMILEKKPHII 140

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++RR L+FSA
Sbjct: 141 IATPGRLVDHLENTKGFNLRQLKFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSA 200

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 201 TMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSF 260

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC T  +  R   +L    F  V L G+++Q +R  AL   +     + I+TDVA+RG
Sbjct: 261 MIFCGTCNNTVRTALLLRNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVASRG 320

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+ +  +  +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQL 380

Query: 368 VWEPAPSVEA--IRER--DAQRILQ-DPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              P    E   ++ER  +AQRI++ D   ++  +   K+         D E+
Sbjct: 381 PLFPTEEEEVMLLQERVSEAQRIVKMDMKNMEDNKKSGKRKKRGGDEDDDTEQ 433


>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
           stuttgartiensis]
          Length = 449

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 180/378 (47%), Gaps = 8/378 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  N    I   +   GYV  T +Q   +   L   DV+  AQTG+GKT AF L +
Sbjct: 1   MKNFQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+             AL I PTRELA QV ++ + L +KT +      GGVS+ ++ 
Sbjct: 61  LHRLMQ-----GERGKIRALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  IVV  PGRL DH++ + + +S ++ +VLDEAD M D+GF  DI  I+     
Sbjct: 116 NRLRSGVEIVVACPGRLLDHMKQRTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSH 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   I  LA+      V V +       +       +         +  +
Sbjct: 176 KRQTLLFSATMPDEIRKLAQEALTKPVTVQLGKTAPASTVKHALYPVKQHLKIPLLLKIL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 ++ ++F  T+         L    ++  +  G LSQ +R  AL   R+G  ++ 
Sbjct: 236 QHTDT-QSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ ++   PE  +HR GRTGRA R G +  ++ ++ +     
Sbjct: 295 VATDIAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFTLVTEDDKAMVRG 354

Query: 359 LFREANVSVVWEPAPSVE 376
           +       +        +
Sbjct: 355 IENILGSRIERYTLEDFD 372


>gi|268680470|ref|YP_003304901.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618501|gb|ACZ12866.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 417

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 7/378 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+ E GY + T VQE  +   L  +D+L  AQTG+GKT  F       LL +
Sbjct: 7   NLNASILKAVQEEGYTHPTPVQEKAIPFILEGRDMLAGAQTGTGKTAGFT-LPLLELLLK 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     +   L + PTRELA QVG  +           AV  GGV +H + + L+NG 
Sbjct: 66  KPRNKAKPSLRVLILTPTRELAAQVGESVRTYGKYLPFKSAVIFGGVGIHPQIQTLKNGI 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+    +N+  +   VLDEAD MLD+GF  DI  ++   P KR+ L+F
Sbjct: 126 DILVATPGRLLDHVSQGTINLKEIDTFVLDEADRMLDMGFIKDIRKVIALLPSKRQNLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  I TL  +  K+   V +A  N     ++ R ++V    +   +  ++  H  K
Sbjct: 186 SATYSDEIKTLCASILKNPAVVEVARRNTSSELVNQRVIIVDCKRKTALLGKLISEHKWK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   ++ ++ L++      A+ G  SQ  R+ AL   + G  +V +ATD+AA
Sbjct: 246 QVLVFTRTKHHANKVSEYLSKIGISASAIHGNKSQSARTKALADFKSGSIKVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ EL +  E+ +HR GRTGRAG +G ++ ++  +     + + +    
Sbjct: 306 RGLDIDQLPHVINLELPNIAEDYVHRIGRTGRAGNEGEAISLVCVDEFDYLKGIEKLIKK 365

Query: 366 SVV------WEPAPSVEA 377
           ++       +EP P+++A
Sbjct: 366 TLEREVVEGFEPDPTIKA 383


>gi|327306565|ref|XP_003237974.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
 gi|326460972|gb|EGD86425.1| ATP-dependent RNA helicase DHH1 [Trichophyton rubrum CBS 118892]
          Length = 508

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 174/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + +      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKIAK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + T    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQ 401

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 402 ELGTEIQPIP-PSIDK 416


>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 192/373 (51%), Gaps = 9/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 27  TFESMGLKEDLLRGIYAYGFEKPSAIQQRAIKPAVQGRDVIAQSQSGTGKTAVFSISILQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           T+       S ++   AL I+PTRELA Q  + +  L     V    CIGG S+  + R 
Sbjct: 87  TIN------STSNETQALVISPTRELAEQTQKVMLALGDYMNVQCHACIGGKSMGEDMRR 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +V GTPGR+ D IR + L    +K +V+DEADEML+ GF+D I  I    P   
Sbjct: 141 LDYGVQVVSGTPGRIFDMIRRRHLRTRTIKLLVIDEADEMLNKGFKDQIYDIYRYLPPST 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++L+ SAT+   +  L   +  + V+V +  +      I    V +     + + + ++ 
Sbjct: 201 QVLVVSATMPQDVLDLTTKFMNEPVKVLVKRDELTLEGIKQFFVAVEQEEWKFDTLCDLY 260

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T  + E  F V ++ G++ Q+ER   +Q  R G +RV I
Sbjct: 261 DTLTITQAVIFCNTKRKVDWLTTKMREANFTVSSMHGDMPQRERDTIMQEFRSGGSRVLI 320

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+  RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  +     R    +
Sbjct: 321 TTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKDEDVRILRDI 380

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 381 EQYYSTQIDEMPM 393


>gi|315047704|ref|XP_003173227.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
 gi|311343613|gb|EFR02816.1| ATP-dependent RNA helicase DHH1 [Arthroderma gypseum CBS 118893]
          Length = 508

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 174/376 (46%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + +      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKIAK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + T    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQ 401

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P PS++ 
Sbjct: 402 ELGTEIQPIP-PSIDK 416


>gi|225457931|ref|XP_002273443.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 732

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 209/443 (47%), Gaps = 11/443 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 131 NLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERLLFR 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQV   +E L   T +   + +GG+S   +   L++  
Sbjct: 191 PKRVQ---AIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSMP 247

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGR+ DH      +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ ++
Sbjct: 248 DVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQTML 307

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  +  L K      +R+      ++ + +    V +      N     + +   
Sbjct: 308 FSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSK 367

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F  T+ +  R   +     F+   L G L+Q +R +AL++ R  +    IAT
Sbjct: 368 TFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 427

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+     +  + +HR GRT RAGR+G +V  +  N +   + + +
Sbjct: 428 DVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIVK 487

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A   +          I+       ++D +   +I  +E++   +  A+ +  K  A  +
Sbjct: 488 RAGSKLRSRIVAEQSIIKWSHMIEQMEDQVA--AILQEEREERILRKAEMEATK--AENM 543

Query: 422 RIHRAGLCAPEEITPVSLVSGRD 444
             H+  + +  + T  +    + 
Sbjct: 544 IAHKDDIYSRPKRTWFATEKEKK 566


>gi|170578338|ref|XP_001894368.1| ATP-dependent helicase DDX48 [Brugia malayi]
 gi|158599081|gb|EDP36794.1| ATP-dependent helicase DDX48, putative [Brugia malayi]
          Length = 399

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 196/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + + +   +   G+   +++Q+  +   ++ +DV+  AQ+G+GKT  F +A+
Sbjct: 30  VHTFDSMGLGEELLRGIYSYGFEKPSAIQQRAIKQIVKGRDVIAQAQSGTGKTATFSIAV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L              AL ++PTRELAVQ+ + +  L     V    CIGG +V  + 
Sbjct: 90  LQSLDIS------LRETQALILSPTRELAVQIQKVVLALGDYLNVQCHACIGGTNVGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P 
Sbjct: 144 RKLDYGQHVVSGTPGRVFDMIRRRNLRTRSIKMLVLDEADEMLNKGFKEQLYDIYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + +
Sbjct: 204 GAQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+TR  V    + L E  F V ++ GE+ Q+ER   ++  R G +R+
Sbjct: 264 LYDTLTITQAVIFCNTRRKVDWLAEKLKEANFTVSSMHGEMEQKERDAIMKEFRGGASRL 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARG+D+P + LV++ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 324 LISTDVFARGLDIPQVSLVVNYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILR 383

Query: 358 RLFREANVSVVWEPA 372
            + +     +   P 
Sbjct: 384 DIEQYYATQIDEMPM 398


>gi|117645818|emb|CAL38376.1| hypothetical protein [synthetic construct]
 gi|208967747|dbj|BAG72519.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [synthetic construct]
          Length = 648

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNGDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDP 390
           +   AN S+  E     E      R+R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFEAHQRKREMERKMERP 640


>gi|15231074|ref|NP_191416.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75335836|sp|Q9M2F9|RH52_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 52
 gi|6735374|emb|CAB68195.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|15146288|gb|AAK83627.1| AT3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|21593710|gb|AAM65677.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
 gi|27363456|gb|AAO11647.1| At3g58570/F14P22_160 [Arabidopsis thaliana]
 gi|332646279|gb|AEE79800.1| DEAD-box ATP-dependent RNA helicase 52 [Arabidopsis thaliana]
          Length = 646

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +      +D++  AQTGSGKT AF   +
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     E  R      PLA+ ++PTRELA Q+  E      +TGV V V  GG  V
Sbjct: 205 ISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I+ 
Sbjct: 265 NQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ 324

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                       ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 325 QMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSD 384

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F    + G+ SQQER
Sbjct: 385 KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQER 444

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 445 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 504

Query: 344 SVFVIPQNMQRRAE---RLFREANVSVV 368
           +      N    A+    L +EAN  V 
Sbjct: 505 ATAFFNDNNTTMAKPLAELMQEANQEVP 532


>gi|256822194|ref|YP_003146157.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795733|gb|ACV26389.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 458

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/362 (31%), Positives = 191/362 (52%), Gaps = 5/362 (1%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            IF+ +   + +A  +  +   + VQE  + P L   DV+VSA+TGSGKT AF L +   
Sbjct: 5   SIFQELHSGLQKAFQKLKFEVPSEVQEKAIEPILDGHDVMVSAETGSGKTAAFLLPIIHN 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R +   +   L +APTRELA Q+ +    L   T +   + IGG     ++   
Sbjct: 65  LLENPSRHT---STRVLILAPTRELARQIDKHARDLTQFTQIKTGLIIGGADYKYQQAIF 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++   I++ TPGR+ +H   +G +++ L+ +V+DEAD+M ++GF DD++ I       R+
Sbjct: 122 RDNPEIIIATPGRMLEHCEKQGADLNDLEYLVIDEADKMFEMGFTDDVQAIAGFCKSDRQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNIL 239
            L+FSAT+         +Y  D  +  + +     +D   + ++ A     ++     +L
Sbjct: 182 TLLFSATLKTKGIKHLTDYLMDEPQAIVLNSFEAKNDSIEQFIITADDLVHKEKLTQWLL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVFC+T+  V R   ++  H      L G++SQ  R++ +   RD + +V I
Sbjct: 242 TNEEYRKAIVFCNTKEQVDRLGGLIRYHKIAAGTLHGDISQSVRNHVMTQFRDSKIKVLI 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+DVAARGID+ D++LVI+ +++ N E+ +HR GRT RAG  G +V +I          +
Sbjct: 302 ASDVAARGIDVKDIDLVINFDMAHNAEDYIHRIGRTARAGETGKAVSLISHREWNLMVTI 361

Query: 360 FR 361
            +
Sbjct: 362 EK 363


>gi|84998580|ref|XP_954011.1| eukaryotic translation initiation factor [Theileria annulata]
 gi|65305009|emb|CAI73334.1| eukaryotic translation initiation factor, putative [Theileria
           annulata]
          Length = 394

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++   + I + +   G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L  
Sbjct: 20  VESFEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGA 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+       S       L ++PTRELA Q  +    L     V V  CIGG  V  + 
Sbjct: 80  LQTVN------SNVRETQVLLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKKVSDDI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  IV GTPGR+   I  + LN  ++K ++LDEADEML+ GF++ +  +    P 
Sbjct: 134 KALESGVQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPP 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  +  +V +  +      I    + +     + + + +
Sbjct: 194 TIQVVLVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCD 253

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V    K + +  F+V  + GE+SQ+ER++ +Q  R G +RV
Sbjct: 254 LYESLIITQAVIFCNTKEKVDWLAKKMKDANFEVSKMHGEMSQKERNDIMQRFRKGESRV 313

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TD+  RG+D+  + LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  R   
Sbjct: 314 LISTDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILR 373

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 374 DIEQYYSTQIDEMPM 388


>gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa]
 gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 211/388 (54%), Gaps = 10/388 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L  RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  + 
Sbjct: 140 LPHRLVQTLQNRGITHLFPIQRAVLIPALEGRDLIARAKTGTGKTLAFGIPIIKRLTEDA 199

Query: 67  D----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    +      P  L +APTRELA QV +E++        V     GGVS   ++  L 
Sbjct: 200 ELRGSQRRTGRLPKVLVLAPTRELAKQVEKEIKESAPYLSSVC--VYGGVSYVTQQSALS 257

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGR+ D ++G  L +  ++ +VLDEAD+ML  GF +D+E IL++ P KR+ 
Sbjct: 258 RGVDVVVGTPGRIIDLLKGNSLKLGEVEYLVLDEADQMLSFGFEEDVEVILENLPSKRQS 317

Query: 183 LMFSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  LA+ Y  + ++++      E        Y     A S R      + 
Sbjct: 318 MLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAEGIKLYALSATAASKRTILSDLVT 377

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      I+F  T+      +  L   +    AL G++SQ +R   L   R G+  V +
Sbjct: 378 VYAKGGKTIIFTQTKRDADEVSMALTNTIAS-EALHGDISQHQRERTLNGFRQGKFTVLV 436

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P+++L+IH EL ++ E  +HRSGRTGRAG++G ++ +   + +R    L
Sbjct: 437 ATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 496

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL 387
            R+A     +   P++E + E  A++++
Sbjct: 497 ERDAGCKFEFVSPPAIEEVLESSAEQVV 524


>gi|242014232|ref|XP_002427795.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212512264|gb|EEB15057.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 460

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 178/390 (45%), Gaps = 12/390 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 73  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYTIPVLEL 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D         AL I PTRELA+Q  +    L       V V  GG ++  +   +
Sbjct: 133 VDPKKDVI------QALIIVPTRELALQTSQICIELAKHMETKVMVTTGGTNLRDDIMRI 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V+ TPGR+ D +     N+   K +VLDEAD++L   F+  ++ ++   PK R+
Sbjct: 187 YQKVQVVIATPGRILDLMEKNVANMDECKTLVLDEADKLLSQDFQGMLDHVISRLPKDRQ 246

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + +  +   VN+  E             V    + + +  +   
Sbjct: 247 ILLYSATFPVTVKNFMEKHLHEPYEVNLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R+G  R  + +
Sbjct: 306 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRNGLCRNLVCS 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 366 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRLALHRIEQ 425

Query: 362 EANVSVVWEP---APSVEAIRERDAQRILQ 388
           E    +   P    PS+   +  D Q I +
Sbjct: 426 ELGTEIKPIPKVIDPSLYVAKLEDTQGIEE 455


>gi|190571463|ref|YP_001975821.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357735|emb|CAQ55186.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 408

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 131/404 (32%), Positives = 209/404 (51%), Gaps = 14/404 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +P ++ +ALS+      T +Q   +   L+ KD+L SAQTG+GKT+AF + L
Sbjct: 1   MSNFHEMGLPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRE 117
            + L+ E    S      AL I PTRELA QV  E+  L +++ +  VA+ IGG  + R+
Sbjct: 61  VAKLMNEPSIGS------ALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              LQ    I++GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   P
Sbjct: 115 LNQLQKKPQIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ LMFSAT+   I  L + Y     RV++  +      I    V  + S++   +V 
Sbjct: 175 KIRQTLMFSATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVT 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L        I F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++
Sbjct: 235 QLCQRKGSIII-FVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P ++ VI+ ++  +  + +HR GRT RAG +G ++  +    +RR  
Sbjct: 294 MVATDVASRGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLP 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            L  +           S    ++R++++I + P  L +  G +K
Sbjct: 354 ALADKEGEPNFDCSMQS----QKRNSKKIFKRPSTLKAKYGRKK 393


>gi|71033289|ref|XP_766286.1| eukaryotic translation initiation factor 4A [Theileria parva strain
           Muguga]
 gi|68353243|gb|EAN34003.1| eukaryotic translation initiation factor 4A, putative [Theileria
           parva]
          Length = 394

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++   + I + +   G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L  
Sbjct: 20  VESFEDLGLKEEILKGIFAYGFDKPSAVQQRAIKPILEGRDVIIQSQSGTGKTCVFCLGA 79

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+       S       L ++PTRELA Q  +    L     + V  CIGG  V  + 
Sbjct: 80  LQTVN------SNVRETQVLLLSPTRELAEQSQKVCLALGDYCNIEVHCCIGGKKVSDDI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  IV GTPGR+   I  + LN  ++K ++LDEADEML+ GF++ +  +    P 
Sbjct: 134 KALESGVQIVSGTPGRVNHMITDRHLNTRNIKQLILDEADEMLNRGFKEQVYSVYRYLPP 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  +  +V +  +      I    + +     + + + +
Sbjct: 194 TIQVVLVSATLPHDVIEITNKFMNNPFKVLVKRDELTLEGIKQFFISVEKEQWKFDTLCD 253

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V    K + +  F+V  + GE+SQ+ER++ +Q  R G +RV
Sbjct: 254 LYESLIITQAVIFCNTKEKVDWLAKKMKDGNFEVCKMHGEMSQKERNDIMQRFRKGESRV 313

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TD+  RG+D+  + LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  R   
Sbjct: 314 LISTDLWGRGLDVQQVSLVVNYDLPNSRESYIHRIGRSGRYGRKGVAINFVKDDDIRILR 373

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 374 DIEQYYSTQIDEMPM 388


>gi|332534395|ref|ZP_08410235.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036129|gb|EGI72604.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 425

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A 
Sbjct: 9   KKFSDFAIAPEVVA-GLTENGFEYCTPIQAKCLPFICDGRDIAGQAQTGTGKTLAFLTAT 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R
Sbjct: 68  CHRLLQSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR 125

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++ D  P 
Sbjct: 126 AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFDRMPD 185

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + L   FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++
Sbjct: 186 TSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLL 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AIVF +T+ S       L     +V  L+G+++Q++R   L     G   
Sbjct: 246 TLIEEEWPEKAIVFANTKHSCETVYAWLKSDGHRVGMLTGDVNQKKRQTILAQFSKGDLD 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++    +      
Sbjct: 306 FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNL 365

Query: 357 ERLFREANVSVV 368
             +      S+ 
Sbjct: 366 HEIEEYIEHSIP 377


>gi|321467260|gb|EFX78251.1| hypothetical protein DAPPUDRAFT_213150 [Daphnia pulex]
          Length = 487

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 183/379 (48%), Gaps = 10/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  + P  +   +  +G+   TS+Q       L   +++  AQTGSGKT+A+ L  
Sbjct: 59  ITSFDEASFPDYVMTEIRRQGFKEPTSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPA 118

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +     P   P+AL +APTRELA Q+    +   + + +      GG     + 
Sbjct: 119 IVHINHQ-PYLEPGDGPIALILAPTRELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQL 177

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD++ G  I++ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 178 RDIERGVEIMIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 237

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA+ +  D +++N+ S     N     I           +   
Sbjct: 238 DRQTLMWSATWPKEVRQLAEEFLTDYIQINVGSLTLSANHNILQIIDVCQEHEKETKLMT 297

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        I+F  T+  V   T+ +    +  + + G+ +Q ER   L   R G+
Sbjct: 298 LLQEIGAEDENKTIIFAETKRKVDSITRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGK 357

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + +ATDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR+ R G +      N  +
Sbjct: 358 APILVATDVAARGLDVDDVKFVINFDYPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSK 417

Query: 355 RAERL---FREANVSVVWE 370
           +A+ L     EAN  V  +
Sbjct: 418 QAQDLVNVLTEANQVVNPK 436


>gi|221105444|ref|XP_002161749.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1335

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 105/393 (26%), Positives = 197/393 (50%), Gaps = 7/393 (1%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            +K +    +   +   L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF + L
Sbjct: 672  IKTWSQAGVSTKVLAVLKKLKYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFLIPL 731

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               ++ +         P+A+ + PTRELA+Q+ RE +    +  +  A   GG  +  + 
Sbjct: 732  FRHVI-DQPPLDENDGPIAIIMTPTRELALQIFREAKKFCKQLNLTAACIYGGSGISEQI 790

Query: 119  RDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             +L+ GA I+V TPGR+ D      G+  N      +V+DEAD M D+GF   +  ILD+
Sbjct: 791  AELKKGAEIIVCTPGRMIDMLTANNGRVTNCRRCTYLVMDEADRMFDMGFEPQVMRILDN 850

Query: 176  SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                R+ ++FSAT    +  +A+      + V +   +   SD++  A+++   ++   +
Sbjct: 851  IRPDRQTVLFSATFPRQMEAIARKVLNKPIEVQVGGRSVVCSDVEQHALVIEEENKFFKL 910

Query: 236  VNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            + +L  +  K + +VF   + S     K L ++ +  ++L G + Q +R + +   ++G 
Sbjct: 911  LELLGVYQEKGSVLVFVEKQESADMLFKDLLKNAYPCLSLHGGMDQFDRDSTIADFKNGV 970

Query: 295  ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             ++ ++T VAARG+D+ +L LV++ +  ++ E+ +HR GRTGRAG KG S   I     R
Sbjct: 971  TKLMVSTSVAARGLDVKNLVLVLNYDCPNHYEDYVHRVGRTGRAGNKGTSFTFITPEQGR 1030

Query: 355  RAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
             A  + +   ++    P   +E   +   +  L
Sbjct: 1031 NAGDIIKAFELAKCTPPTDVMELWNKFKLEMQL 1063


>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
 gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
           BAL199]
          Length = 446

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 181/361 (50%), Gaps = 1/361 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +    +  GY   T +Q A + P L  +D++  AQTG+GKT AF L +   L A  
Sbjct: 11  LAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPMLHRLAAAG 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++  P  AP AL + PTRELAVQ+   +E      G+  A+  GGVS   +   LQ G  
Sbjct: 71  EKRIP-KAPRALILTPTRELAVQIAGVVETFGRSIGLRHALVHGGVSARPQAVALQRGVE 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D I  + + +  ++  VLDEAD MLDLGF  D++ I    P  R+  +FS
Sbjct: 130 VMIATPGRLLDLINQRAVFLDKVEYFVLDEADRMLDLGFVRDVKRIAALVPANRQTALFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +I  L ++  ++  RV I   +     I    + VA +++   +  +L       
Sbjct: 190 ATMPQSIIELTESLLRNPERVQITPTSTPIERIQQSVMFVARANKRTLLARLLGAPDVSR 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+  V R    L         L G  SQ  R  AL   + GR  + +ATD+AAR
Sbjct: 250 AIVFVRTKHGVDRVVDSLRRDGLTAEGLHGNKSQGARQTALDAFKRGRLPILVATDIAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++  VI+ +L   PE  +HR GRT RAG  G++V             +  E   +
Sbjct: 310 GIDVHEISHVINLDLPDVPETYIHRIGRTARAGAGGIAVSFCENEEIGNFMAIESEIRRT 369

Query: 367 V 367
           +
Sbjct: 370 I 370


>gi|149275912|ref|ZP_01882057.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149233340|gb|EDM38714.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 443

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/418 (26%), Positives = 196/418 (46%), Gaps = 23/418 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + I  A+++ G+   T +QE  + P L  +D+   A+TG+GKT A+ L + 
Sbjct: 3   KSFEEFNLNRQILNAVADAGFTVATPIQEKAIAPVLSGQDLFGIAETGTGKTAAYVLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++   +  AL +APTRELA+Q+   ++       +   V  GG+    +  
Sbjct: 63  MQL-----KYAQGDSARALILAPTRELAMQITEHIKVFSTYLDLRTVVIFGGIGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGR  D      +N  +LK +VLDEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 QIKAGVDIIVATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVN- 237
           R+ L+FSAT+S  +  +A ++ K    V +A +      +      +     + N + + 
Sbjct: 178 RQNLLFSATMSSLVQKIAGDFLKHPTIVEVAEQATPAQTVTQTLYEVPNFKTKINLLQHL 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGRA 295
           +      K  I+FC T+         +              ++ + +        ++G  
Sbjct: 238 MKNDEEFKRVIIFCKTKTVADNIFSFIERRFGADAVRVIHANKGQNTRINSINDFKEGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV +ATDVA+RGID+ ++  VI+ ++    E+ +HR GRTGRA  KG ++       +  
Sbjct: 298 RVLVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRALSKGDALTFFTDAEKYY 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRER------------DAQRILQDPLFLDSIQGDEK 401
            +++ +     +   P P+   + E             D Q+  +DP F  +    + 
Sbjct: 358 IKKIEKLIRQEIPVVPLPAEVFVEETPYEERQAINRAIDDQKRKEDPTFKGAFHEKKH 415


>gi|141796059|gb|AAI34864.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L     +  + 
Sbjct: 102 FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA QV +        + +      GG     + RDL+ G  
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++ +D V++NI +     + +I     +   +++DN ++ ++    A+
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAE 340

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATD
Sbjct: 341 KENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         R+A  L R
Sbjct: 401 VASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVR 459


>gi|212633329|ref|YP_002309854.1| ATP-dependent RNA helicase RhlB [Shewanella piezotolerans WP3]
 gi|226739551|sp|B8CHZ1|RHLB_SHEPW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|212554813|gb|ACJ27267.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 437

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 209/393 (53%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  
Sbjct: 9   KKFADFPLHKEVQQALNEVGFEFCTPIQALSLPILLAKKDIAGQAQTGTGKTLAFLVATF 68

Query: 60  STLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           + LL E        + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG     +R
Sbjct: 69  NHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEAQR 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I++GT GR+ D++R   +++S ++AVVLDEAD M DLGF  DI F+    P 
Sbjct: 129 KVLDKGIDILIGTTGRIIDYVRQGVIDVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPD 188

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R  ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   ++
Sbjct: 189 AKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLL 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L     + AIVF +T+ S  +    L     +V  L+G++ Q++R   L+    G   
Sbjct: 249 SLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +      
Sbjct: 309 VLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNL 368

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             +      S+          +   D++ +L D
Sbjct: 369 PAIESYIQHSIP---------VTSYDSEALLDD 392


>gi|163750312|ref|ZP_02157553.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
 gi|161329984|gb|EDQ00969.1| ATP-dependent RNA helicase SrmB [Shewanella benthica KT99]
          Length = 421

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  +  ++ E+L   G+   T++Q+  +   + +KD+L  A TG+GKT +F L    
Sbjct: 13  LFEDFLLDPILLESLKAMGHKKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQ 72

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    RFS  +    L + PTRELA Q+ R    L     + + +  GG+    +   
Sbjct: 73  HIIDFPRRFSGQA--RVLVLTPTRELASQIHRYASHLSTGLDLNIVIITGGMPYGPQEEA 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   I+V TPGRL +++     N   ++  V+DEAD MLD+GF   +E +   S  ++
Sbjct: 131 LKNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRK 190

Query: 181 RMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT   S       +           A  + +     +  +      +   + NI
Sbjct: 191 QTMLFSATLEGSDVGRFSHQLLTDPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       IVF  TR  V+    +L         + G++ Q++R  AL     G   V 
Sbjct: 251 LRQEDVTRTIVFVKTREGVASLEGLLQREGITCSFMRGDMEQKQRFQALGRFTKGEVSVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++  VI+ ++  + +  +HR GRT RAG KG ++ ++  +  R   +
Sbjct: 311 LATDVAARGIDVDNISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVGK 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R  +  +       ++ +R ++ +
Sbjct: 371 IERYIDQVLKRR---FIKDLRPKNKE 393


>gi|124505073|ref|XP_001351278.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|4493972|emb|CAB39031.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|117956282|gb|ABK58709.1| RNA helicase [Plasmodium falciparum]
 gi|117956284|gb|ABK58710.1| RNA helicase [Plasmodium falciparum]
          Length = 433

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+GY   + +QE  +   L  K++L  A+ G+GKT AF + L   
Sbjct: 62  FEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEK 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                +          L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 122 CNTHKNFI------QGLILVPTRELALQTSAMIKELGKHMKVQCMVTTGGTSLREDIMRL 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+ GTPGR+ D       N+S    +V+DEAD++L   F+  +E ++   PK+++
Sbjct: 176 YNVVHILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LM+SAT    +      Y  DA  +N+  E             V    + + +  +   
Sbjct: 236 ILMYSATFPVTVKEFRAIYLSDAHEINLMDELTLKGI-TQYYAFVKERQKVHCLNTLFAK 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  +    +   +SQ  R+      R+G  R  +++
Sbjct: 295 LQINQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSS 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++  
Sbjct: 355 DLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDRFNLYKIEV 414

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 415 ELGTEIQPIP 424


>gi|258597823|ref|XP_001348611.2| helicase, putative [Plasmodium falciparum 3D7]
 gi|255528866|gb|AAN37050.2| helicase, putative [Plasmodium falciparum 3D7]
          Length = 527

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 182/390 (46%), Gaps = 6/390 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + ++L     V  T +Q       L  KD++  A+TGSGKT+AF L     +LA+ 
Sbjct: 120 FPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQ- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA Q+ +E      ++ +      GGV    +   L+ G H
Sbjct: 179 PNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVH 238

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++  PGRL D +     N+  +  +VLDEAD+MLD+GF   I  I+D     R+ LM+S
Sbjct: 239 ILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWS 298

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNA--IVNILRYH 242
           AT    +  LAK+  K+                 I     L+   ++      +    + 
Sbjct: 299 ATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFK 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  T+ +    TK L       + + G+  Q+ER   L   + G++ + IATD
Sbjct: 359 DNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPIMIATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+ +++ VI+ +  +  E+ +HR GRTGRAG  G S   +  +  R A+ L + 
Sbjct: 419 VASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKI 478

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
              S    P P +E I         ++P +
Sbjct: 479 LRESEQPVP-PQLEKISYSMGNNQRRNPYY 507


>gi|217973506|ref|YP_002358257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498641|gb|ACK46834.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 467

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 208/463 (44%), Gaps = 6/463 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+ 
Sbjct: 8   LSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADM 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKI-RAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + 
Sbjct: 186 ATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLGHI 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA--AGFLRIH 424
           +V +       +  ++    + D +  ++     K            ++ +      + H
Sbjct: 366 IVRKEIEGF--VPNKEVPVSILDFVPKNTTPKTFKARAPEARTSRPAKEGSFETAHAKKH 423

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           R+    PE    V+               +    +  N    +
Sbjct: 424 RSAKSKPEAKAAVARPQSAQTENSSEATGRSAPFNPWNSGPKT 466


>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
           [Apis mellifera]
          Length = 452

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 211/396 (53%), Gaps = 9/396 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ +A  +  + + T +Q   +   L  KD++  A+TGSGKT AF L +   LL    R
Sbjct: 27  DVLCKACEDLKWKSPTKIQYEAIPLALEGKDIIGLAETGSGKTAAFALPILQALLENPQR 86

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +   L    HI+
Sbjct: 87  Y------FALILTPTRELAFQISEQFEALGSSIGVKCAVIVGGMDMMSQALILAKKPHIL 140

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      ++  LK +V+DEAD +L++ F  +++ IL   P++R+ L+FSA
Sbjct: 141 IATPGRLVDHLENTKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRVIPRERKTLLFSA 200

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++ V+V ++++ +    +    + + +  +D  +V+IL      + 
Sbjct: 201 TMTKKVQKLQRASLRNPVKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSF 260

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FC+T  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 261 MIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVASRG 320

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANV 365
           +D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+ +     +
Sbjct: 321 LDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLISKQL 380

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +       V  + ER A+      + +  I+  +K
Sbjct: 381 PLYATQEEEVMVLEERVAEARRIVKMEMKDIEDSKK 416


>gi|297830944|ref|XP_002883354.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329194|gb|EFH59613.1| hypothetical protein ARALYDRAFT_479744 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 615

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/373 (34%), Positives = 201/373 (53%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +AL  RG   L  +Q+A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 127 ISPEIVKALKGRGIEKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPVIDKIIKFN 186

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L +APTRELA QV +E          +     GG  + ++ R+L  G  
Sbjct: 187 AKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYGID 244

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL   P+KR+ +MFS
Sbjct: 245 VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPEKRQSMMFS 304

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I +L K Y  + + ++    + +        Y     +          +  +  
Sbjct: 305 ATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVNEHGK 364

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   + +ATDV
Sbjct: 365 GGKCIVFTQTKR-DADRLAFGLAKSFKCEALHGDISQAQRERTLAGFRDGNFNILVATDV 423

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL +N E  +HR+GRTGRAG+KG ++ +  Q   R  + + +E 
Sbjct: 424 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQEQSRAVKMIEKEV 483

Query: 364 NVSVVWEPAPSVE 376
                  P+ +VE
Sbjct: 484 GSRFNELPSIAVE 496


>gi|172065244|ref|YP_001815956.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171997486|gb|ACB68403.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 477

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 188/368 (51%), Gaps = 1/368 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +    
Sbjct: 11  PLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGPAV 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++V
Sbjct: 71  SSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT 
Sbjct: 130 ATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATF 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I T+A +  +  V ++++  N   S I    V V   ++ +  ++++  +   +A+V
Sbjct: 190 TDDIRTMAASILRSPVNISVSPPNVTASKIKQWVVTVDKRNKPDLFMHLVAENNWDHALV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D
Sbjct: 250 FVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++  
Sbjct: 310 IDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGQTLRR 369

Query: 370 EPAPSVEA 377
           E  P  EA
Sbjct: 370 EEEPGFEA 377


>gi|320158479|ref|YP_004190857.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
 gi|319933792|gb|ADV88655.1| ATP-dependent RNA helicase DbpA [Vibrio vulnificus MO6-24/O]
          Length = 459

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 134/372 (36%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT  F L L S L   
Sbjct: 9   SLKPELLSTLDTLGYTEMTPIQAQSLPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QSLVLCPTRELADQVATEIRTLARGIHNIKVLTLCGGMPMGPQILSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    ++++ L  +VLDEAD ML++GF+D I+ I+D++P +R+ L+
Sbjct: 123 AHILVGTPGRILDHLSKGRIDLAELNTLVLDEADRMLEMGFQDAIDAIIDAAPTQRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I T+A    ++   V + S +++ +       L +  +RDNA+  +L  H  
Sbjct: 183 FSATFPEQIETIASKVMQNPEMVKVESTHQKSTIEQRFYQLESTEERDNALEALLLTHRP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+  V   T  L    F V+ L G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESTVVFCNTKKEVQNVTDELNHRRFSVIELHGDMEQRERERALTMFANKSISILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+ ELS +PE  +HR GRTGRAG KG+++    +    R ER+     
Sbjct: 303 ARGLDVDNLDAVINFELSRDPEVHVHRIGRTGRAGAKGIAISFFSEKELYRVERIEEYMG 362

Query: 365 VSVVWEPAPSVE 376
           + V     P  E
Sbjct: 363 IDVHPAKLPQPE 374



 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
            S+  +       +  G KQK  A  ++  L + +GI+ + IG I + P +++V +    
Sbjct: 375 NSKPYYPSMRTIQILGGKKQKVRAGDILGSLTKEAGIDGKLIGKINILPMVSYVAIDNSV 434

Query: 518 VDLLRRTVKLDK 529
             +  + ++  K
Sbjct: 435 AKIAEQQLQNGK 446


>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
          Length = 472

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 124/426 (29%), Positives = 207/426 (48%), Gaps = 18/426 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L +   V  AV +GG+ +  +  
Sbjct: 112 QALMEKPQSF------FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSI 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 166 ALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         + +    +D  +V 
Sbjct: 226 ERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R + +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 286 LLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q       
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWL 405

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLA 409
           R+       +              E + E   Q I++   F +      KK         
Sbjct: 406 RIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTKAKKFGKGKRSRD 465

Query: 410 KHDPEK 415
           + D E+
Sbjct: 466 EMDQEE 471


>gi|124361137|gb|ABN09109.1| Helicase, C-terminal [Medicago truncatula]
          Length = 413

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNV 400

Query: 366 SVVWEPAPSVE 376
            +   P+   E
Sbjct: 401 LIEELPSNVAE 411


>gi|108742054|gb|AAI17661.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L     +  + 
Sbjct: 102 FPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA QV +        + +      GG     + RDL+ G  
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++ +D V++NI +     + +I     +   +++DN ++ ++    A+
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAE 340

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATD
Sbjct: 341 KENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         R+A  L R
Sbjct: 401 VASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVR 459


>gi|19309904|emb|CAC84069.1| vasa-like protein [Danio rerio]
          Length = 715

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 181/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 275 IMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 334

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 335 LQRFMTDGVAASKFSEMQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 394

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+GF  ++      
Sbjct: 395 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS 454

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  +++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 455 PGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYS 514

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 515 KRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 574

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G   V +AT VAARG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V    P
Sbjct: 575 RLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNP 634

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 635 ESDTPLARSLVK 646


>gi|255533113|ref|YP_003093485.1| DEAD/DEAH box helicase domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255346097|gb|ACU05423.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 444

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 188/385 (48%), Gaps = 11/385 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE  N+ + I  A+++ G+   T +QE  + P L  +D+   AQTG+GKT A+ L + 
Sbjct: 3   KKFEDFNLNRQILNAVADAGFTEATPIQEKAIAPVLSGQDIFGIAQTGTGKTAAYVLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++   A  AL +APTRELA+Q+   ++   A T +   V  GG+    +  
Sbjct: 63  MQL-----KYAQGDAARALILAPTRELAMQIAEHVKMFAAYTDLRSVVIFGGIGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I++ TPGR  D      +N  +LK +VLDEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 QIKAGVDIIIATPGRFLDIYLAGHINTQYLKFLVLDEADKMMDMGFIGSIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  +A ++ K+   + +A +    + +      V        ++  L
Sbjct: 178 RQNLLFSATMSNLVQKIAGDFLKNPTIIEVAEQATPAATVTQTLYEVPNFKTKINLLQHL 237

Query: 240 RYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG--RA 295
             +  +    I+FC T+         +     +        ++ + +    +        
Sbjct: 238 MKNDEEFKRLIIFCKTKTVADNIYSFITRRFGEDAVRVIHANKGQNTRINSINNFKEGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV +ATDVA+RGID+ ++  VI+ ++    E+ +HR GRTGRA  KG ++       +  
Sbjct: 298 RVLVATDVASRGIDVSEVSHVINFDVPIIIEDYVHRIGRTGRAYAKGDALTFCSPAEKYY 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRE 380
            +++ +     +   P P    + E
Sbjct: 358 IQKIEKLIRQQIPVVPLPPEVFVEE 382


>gi|297841061|ref|XP_002888412.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334253|gb|EFH64671.1| hypothetical protein ARALYDRAFT_315588 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 196/396 (49%), Gaps = 15/396 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 141 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 200

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E      +    P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 201 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI 
Sbjct: 261 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 321 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q++R  A+   
Sbjct: 381 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERD 382
           N         + L +EA   +    A   + + E +
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAE 535


>gi|242009038|ref|XP_002425300.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212509065|gb|EEB12562.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 1014

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 190/369 (51%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L + 
Sbjct: 355 VSKKVLEILKKNGFEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQ 413

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ + PTREL +Q+G++ +       + V    GG  +  +  +L+ GA 
Sbjct: 414 PPLEETDGPIAIIMTPTRELCMQIGKDCKKFSKSVSLKVVCVYGGTGISEQIAELKRGAD 473

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D      G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +
Sbjct: 474 IVVCTPGRMIDMLAANSGRVTNLLRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTV 533

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYH 242
           MFSAT    +  LA+      + V +   +    D++   V++    +   ++ +L  Y 
Sbjct: 534 MFSATFPRQMEALARRILTKPIEVQVGGRSVVCKDVEQHVVVLDEDKKFLKLLELLGIYQ 593

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + IVF   + S     K L +  +  ++L G + Q +R + +   + G+ ++ IAT 
Sbjct: 594 NQGSVIVFVDKQESADDLLKELMKASYPSMSLHGGIDQFDRDSTIIDFKSGKVKLLIATS 653

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG++   I    +R A  + R 
Sbjct: 654 VAARGLDVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGVAYTFITPEQERYAGEIIRA 713

Query: 363 ANVSVVWEP 371
             +S V  P
Sbjct: 714 LELSSVAVP 722


>gi|159154994|gb|AAI54494.1| LOC556764 protein [Danio rerio]
          Length = 519

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ + + L ++ +   T++Q       L  +D++  AQTGSGKT+A+ L     +  + 
Sbjct: 102 FPQYVIDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA QV +        + +      GG     + RDL+ G  
Sbjct: 161 PYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVE 220

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+S
Sbjct: 221 ICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 280

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++ +D V++NI +     + +I     +   +++DN ++ ++    A+
Sbjct: 281 ATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAE 340

Query: 246 N---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IATD
Sbjct: 341 KENKTIIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           VA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         R+A  L R
Sbjct: 401 VASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVR 459


>gi|126632201|gb|AAI33101.1| Ddx46 protein [Danio rerio]
          Length = 1032

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 125/468 (26%), Positives = 222/468 (47%), Gaps = 13/468 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +     
Sbjct: 365 VLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRP-VG 423

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A  PLA+ + PTRELA+Q+ +E +       + V    GG  +  +  +L+ GA I+V 
Sbjct: 424 EAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVC 483

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VV+DEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 484 TPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 543

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
           T    +  LA+      V V +   +   SD++   +++    +   ++ IL ++  K +
Sbjct: 544 TFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGS 603

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L +  +  ++L G + Q +R + +   ++G  R+ +AT VAAR
Sbjct: 604 VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAAR 663

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRA  KG +   I +   R +  + +   +S
Sbjct: 664 GLDVKQLILVVNYSCPNHYEDYVHRAGRTGRARNKGYAYTFITEGQARYSGDILKALELS 723

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH----DPEKIAAGFLR 422
               PA  +E +     ++   +   + S  G   K       +H    + +K+    L 
Sbjct: 724 GSSVPA-ELEQLWTNFKEQQKAEGKIIKSSSGFSGKGFKFDETEHALANERKKLQKAALG 782

Query: 423 IHRAGLCA---PEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           +H +         +    S+ + + R +D S    V  GS     GS 
Sbjct: 783 LHDSDDEDTALDIDEQIESMFNSKKRVKDFSAPGSVSAGSAGGVSGSV 830


>gi|332139978|ref|YP_004425716.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550000|gb|AEA96718.1| ATP-dependent RNA helicase RhlB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 429

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 196/371 (52%), Gaps = 6/371 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+   + + T +Q   L P L   D+   AQTG+GKT+AF +A    
Sbjct: 10  FSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTIAFLVATFHY 69

Query: 62  LLA--ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LL+  EN   S ++ P A+ +APTRELAVQ+  + + L   TG+ + +  GG     +R 
Sbjct: 70  LLSKAENADNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK- 178
            L+ G  I++GT GR+ D+ +    ++ +++  VLDEAD M DLGF  DI F+    P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIRFLFRRMPPA 189

Query: 179 -KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R  ++FSAT+S  +  LA  +  +   V +A E    + +       +  D+   ++ 
Sbjct: 190 GERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLT 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     + AIVF +T+ S  + T  L     +V  LSG++ Q++R   L+    G+  V
Sbjct: 250 LLEEEWPEKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDV 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ +  +  V + +L  + E+ +HR GRTGRAG+ G+++    +       
Sbjct: 310 LVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYALNLP 369

Query: 358 RLFREANVSVV 368
            + +    ++ 
Sbjct: 370 AIEQYIQNAIP 380


>gi|71005310|ref|XP_757321.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
 gi|74703958|sp|Q4PFD9|PRP5_USTMA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46096725|gb|EAK81958.1| hypothetical protein UM01174.1 [Ustilago maydis 521]
          Length = 1156

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 189/388 (48%), Gaps = 10/388 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + +   GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   +  + 
Sbjct: 483 LPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQR 542

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P+  P+ + + PTRELAVQ+ RE+       G+  A   GG  +  +  +++  A 
Sbjct: 543 P-VEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTAD 601

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGRL D      G+  N+  +  +VLDEAD M D+GF   +  IL++    R+ +
Sbjct: 602 IVVATPGRLIDLLTANSGRVTNLYRVTYLVLDEADRMFDMGFEPQVMKILNNIRPDRQTV 661

Query: 184 MFSATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---- 238
           +FSAT    + +LA+   K+    + +   +   ++I+    + +   + + ++ I    
Sbjct: 662 LFSATFPKQMESLARKVLKNKPLEITVGGRSVVAAEIEQIVEVRSEDTKFHRLLEILGEL 721

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    ++F   + +     K L    +  ++L G   Q +R   +   + G   + 
Sbjct: 722 YNREKDARTLIFVDRQEAADDLLKDLIRKGYVTMSLHGGKDQVDRDETISDFKAGNVPIV 781

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            AT VAARG+D+  L+LVI+ ++ ++ E+ +HR+GRTGRAG+KG  +  I     R A  
Sbjct: 782 TATSVAARGLDVKQLKLVINYDVPNHMEDYVHRAGRTGRAGQKGTCITFITPEQDRYARD 841

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI 386
           +      S    P P +EA+     +++
Sbjct: 842 IIAALKASAAHVP-PELEAMAASFKEKL 868


>gi|319783363|ref|YP_004142839.1| DEAD/DEAH helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169251|gb|ADV12789.1| DEAD/DEAH box helicase domain protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 474

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 135/455 (29%), Positives = 219/455 (48%), Gaps = 16/455 (3%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A    G+     +Q   + P +  +D+   AQTGSGKT AF L + S ++A   +  
Sbjct: 27  LLKATHNAGFTEPKPIQAQAIPPQMEGRDIFGIAQTGSGKTAAFALPILSKIIALGTKRR 86

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
           P +A  AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ 
Sbjct: 87  PKTA-RALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIA 145

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +R   L ++  K +VLDE D MLD+GF +D++ I  ++   R+ ++FSAT+ 
Sbjct: 146 TPGRLTDLVREGDLMLADTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTVLFSATMP 205

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   K+ +RV +A ++   ++I    V      +   +  +L     K+ I+F
Sbjct: 206 NEIAELAKGLLKNPIRVEVAPQSTAAAEIVQGVVFARTKQKRQVLSTMLADETMKSVIIF 265

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R TK L    F+   + G  SQ  R  AL   RDG  R+ +ATD+AARGID+
Sbjct: 266 SRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDV 325

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSV 367
           P +  V++ +L    E+ +HR GRTGR G  G+++ +   +     R+ ER+ R   + +
Sbjct: 326 PGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIR-TKLPI 384

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI---- 423
           V +   S + +R        +     +       +       +   E    GF +     
Sbjct: 385 VADHLGSPDPLR-----NPAEKNERFEPANDRNDRNGRRDGRRPGGENKGNGFGKKRFGD 439

Query: 424 --HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
               AG   P+   P    + + RF     A +  
Sbjct: 440 KPAFAGERKPDGAKPAFKGNNKRRFGGKRPAARAA 474


>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
 gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
          Length = 442

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 185/385 (48%), Gaps = 8/385 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL ++GY   T++Q+  +   +   DVL SA TG+GKT AF L     LL  
Sbjct: 11  DLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPAIQHLLDY 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA+QV  + E L   T + +A   GGV+            
Sbjct: 71  PRR--KPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNKNQ 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+F
Sbjct: 129 DIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+   +     +   +      A  +R+      +      +   +   +   +    
Sbjct: 189 SATLEGDLLEDFADRTLNEPVKIDAEPSRRERKKIQQWYYHADSNEHKFKLLARFIEQEQ 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V ++TDV
Sbjct: 249 VSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLVSTDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE- 362
           +ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V  +  +  R   ++ R  
Sbjct: 309 SARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKIKRYT 368

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQ 384
                  V+    P  +A ++ + +
Sbjct: 369 QEILKARVIEGLEPRTKAPKDGEIK 393


>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
          Length = 398

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 195/368 (52%), Gaps = 7/368 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   I   +++ G+V  T +Q   +   +  +D++  AQTG+GKT AF L +  
Sbjct: 3   FKTF-NLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+             +L IAPTRELA Q+  ++  L   T +      GGV+++ + + 
Sbjct: 62  RLIQ-----GKRGHVRSLIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DH+  K ++++ ++ +V+DEAD M D+GF  DI  IL   P +R
Sbjct: 117 LKRGAEIVVACPGRLLDHMTRKTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I +LAK+  KD + + ++      +       +     +   ++ +L 
Sbjct: 177 QTLLFSATMPDEIKSLAKDILKDPITIKVSETVPADTVSHAHYPVAQH-LKTAFLLKLLE 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +  +K+ +VF  T+       + LA+  F+  +L G LSQ  R  AL   R+GR +V +A
Sbjct: 236 HINSKSVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++   P+  +HR GRTGRA + G +  +I    ++    + 
Sbjct: 296 TDIAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLITSEDKKMVNIID 355

Query: 361 REANVSVV 368
           R     + 
Sbjct: 356 RVIGSKIE 363


>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 444

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 185/370 (50%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A  ++GY   + +Q   +   L  KDV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQMLEQNP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTRELA QV   +           AV  GGV ++ +   L+ G  
Sbjct: 68  RT---GKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRKGLD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D  +   +  + ++ +VLDEAD MLD+GF  DI  IL   P KR+ L+FS
Sbjct: 125 VLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLAK    D V++++A  N     +      V  S +   +  ++R +  + 
Sbjct: 185 ATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDNSWEQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R T+ L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 245 VLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVATDIAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++  +       + +     
Sbjct: 305 GLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGIEKLIKKQ 364

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 365 LPRKEVEGFE 374


>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
          Length = 570

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/364 (31%), Positives = 180/364 (49%), Gaps = 7/364 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R S    P+AL +APTRELA Q+ +        + V      GG     + RDL
Sbjct: 176 INHQ-PRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDL 234

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+
Sbjct: 235 ERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQ 294

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
            LM+SAT    +  LA+ +  D +++NI S     +    + V V        +   ++ 
Sbjct: 295 TLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKESKLMKLLE 354

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ +  + +Q + + G+ SQQER   L   R+ R+ +
Sbjct: 355 EISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLNQFRNSRSAI 414

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A 
Sbjct: 415 LVATDVAARGLDVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAG 474

Query: 358 RLFR 361
            L +
Sbjct: 475 DLIQ 478


>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
          Length = 426

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L +  +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   
Sbjct: 7   DLEDAVLDGLYDMNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRERRDL 121
           +    P  A  A+ +APTRELA Q+ ++++        V AV + G    ++  +++R L
Sbjct: 64  SKGCHPTDAVNAVIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+ TPGRL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   +
Sbjct: 124 EMGADIVIATPGRLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+ P I TLAK   KD   V   + +R    I   A +     +   + ++   
Sbjct: 184 TIMFSATMPPKIRTLAKTILKDPEEV-KIAISRPPESIMQTAYICYDPQKLKILQDLFTQ 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F S++  V      L    F V A+  +L Q +R   ++  + G   + +AT
Sbjct: 243 SRPQRVIIFSSSKMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DV ARGID+ D++LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+ 
Sbjct: 303 DVVARGIDINDIKLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIE 362

Query: 361 REANVSVVWEPA 372
                 V   P 
Sbjct: 363 DFLEKEVYKIPV 374


>gi|149191365|ref|ZP_01869617.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148834782|gb|EDL51767.1| ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 430

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/386 (29%), Positives = 194/386 (50%), Gaps = 3/386 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  
Sbjct: 15  DLQPQIIEGLEKKGFEYCTPIQALALPVLLAGRDIAGQAQTGTGKTLAFLTATFNHLLTT 74

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   L+ G
Sbjct: 75  PEHDGRKPNQPRAIIMAPTRELAIQIQNDAKPLIESTGLKTALAYGGDSYDKQLAKLEEG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--M 182
             I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    
Sbjct: 135 VDILIGTCGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       + +++   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELFYPSNNEKMALLQTLVEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIIFANTKHKCEKVWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +   
Sbjct: 315 VAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIEEY 374

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQ 388
               +      S   + E  A  +L+
Sbjct: 375 IEHQIPVSDYDSSALLTELPAPLVLK 400


>gi|162458395|ref|NP_001105396.1| translational initiation factor eIF-4A [Zea mays]
 gi|2341061|gb|AAB67607.1| translational initiation factor eIF-4A [Zea mays]
          Length = 414

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPS 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLF 393

Query: 358 RLFREANVSVVWEPA 372
            + +  NV +   PA
Sbjct: 394 DIQKFYNVLIEELPA 408


>gi|71421857|ref|XP_811932.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70876653|gb|EAN90081.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/400 (28%), Positives = 190/400 (47%), Gaps = 24/400 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F   N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L
Sbjct: 130 MESFASMNTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPL 189

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S++L      +      S+P AL +APTREL++Q+  E      +TG+   V  GG   
Sbjct: 190 VSSILSNATPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADP 249

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  +L  G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+ 
Sbjct: 250 RHQVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQ 309

Query: 175 SSPKKRRMLM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                           +SAT    I  LA+ +      + +        +I      V  
Sbjct: 310 GQESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED 369

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +D+   ++ +L  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+
Sbjct: 370 NDKREHLLRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALK 429

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           M +    +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G ++   
Sbjct: 430 MFKSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISF- 488

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
                      F E N ++V +  P +    +   Q+I+ 
Sbjct: 489 -----------FNEKNRNIVDDLVPLLNETHQNVLQQIMD 517


>gi|110760457|ref|XP_391829.3| PREDICTED: putative ATP-dependent RNA helicase Pl10 [Apis
           mellifera]
          Length = 701

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 200/391 (51%), Gaps = 22/391 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  ++S  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 222 ITSFDEVKLTEIIKNSISLAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPI 281

Query: 59  ASTLLAENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + +     R  P ++       PL L +APTRELA Q+  E      ++ +  AV  GG
Sbjct: 282 LNQIYESGPRPPPINSSGKRKHFPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYGG 341

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I  
Sbjct: 342 SNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIRR 401

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I+           + LMFSAT    I  LA+++  + + + +        +I  + V V 
Sbjct: 402 IVQEDTMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVWVE 461

Query: 228 LSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             D+ + ++++L+     +       +VF  T+       + L +  + V ++ G+ +Q+
Sbjct: 462 EHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLHQMGYPVTSIHGDRTQR 521

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER +AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G  
Sbjct: 522 EREDALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGNL 581

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVVW 369
           G++         N+ R    L  EAN  +  
Sbjct: 582 GLATSFFNNKNINLVRDLVSLLVEANQELPP 612


>gi|242798281|ref|XP_002483137.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218716482|gb|EED15903.1| ATP-dependent RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 591

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/472 (23%), Positives = 205/472 (43%), Gaps = 16/472 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     EA+ E G+  +T +Q+  + P +  +DVL +A+TGSGKT+AF +     L   
Sbjct: 118 NLSDRTLEAIKEMGFETMTEIQQRAIPPLMAGRDVLGAAKTGSGKTLAFLIPAIELL--H 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    L ++PTRELA+Q+      L  K      + +GG +   E   L+ G 
Sbjct: 176 SLKFKPRNGTGVLILSPTRELALQIWGVARQLLEKHSQTHGIVMGGANRRAEAEKLEKGV 235

Query: 126 HIVVGTPGRLCDHIRGK----GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +++V TPGRL DH++        N+  L     D   E+        I  IL +  ++  
Sbjct: 236 NLLVATPGRLLDHLQNTKGFVFKNLRQLVIDEADRILEIGFEDEMKQIMKILGNGERQTS 295

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILR 240
           +   + T                    +        D  +   V+     R   + + L+
Sbjct: 296 LFSATQTTKVEDLARISLKPGPLYINVVPRMENATVDRLEQGYVVCEPDKRFLLLFSFLK 355

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV+ ++++L      V+++ G+  QQ+R++      +    + I 
Sbjct: 356 RNLKKKIIVFLSSCNSVNYYSELLNYIDLPVLSIHGKQKQQKRTSTFFEFVNSERGILIC 415

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P+++ V+  +   +P + +HR GRT R A  KG S+  +  +       L
Sbjct: 416 TDVAARGLDIPEIDYVVQYDPPDDPRDYIHRVGRTARGAKAKGRSLMFLQPSEMGFLTHL 475

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P  + I  +   ++++    +L+    +  +      A H    +  
Sbjct: 476 -KEAKVPVVEFEFPQKKIINVQSQLEKLISQNYYLNKSAKEGYRSYINAYASHSLRSVFD 534

Query: 417 --AAGFLRIHRA-GLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 ++I ++ G   P  +   +     RD+     RA+       + FK
Sbjct: 535 VNKLDLVKIAKSFGFSTPPRVDITLGASMSRDKKVQGRRAYGSQPKQANRFK 586


>gi|91205891|ref|YP_538246.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157826748|ref|YP_001495812.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
 gi|91069435|gb|ABE05157.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii RML369-C]
 gi|157802052|gb|ABV78775.1| ATP-dependent RNA helicase RhlE [Rickettsia bellii OSU 85-389]
          Length = 411

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 200/383 (52%), Gaps = 12/383 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+P+ +   L        T +Q+  +   +   D+L S+QTGSGKT+A+ L + +
Sbjct: 1   MKNF-NLPEELTTTLEAMKITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPVIN 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             + +            L + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFIKDKTTT--------LILVPTRELATQICSTLNKVTTSFKINNAVLIGGEPMPKQFTQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I +L++ Y  + VR+ + + N+  ++I   +V +   ++    +N   
Sbjct: 172 QVLMFSATMPKHIISLSQKYLNNPVRITVGATNKAAAEIKQESVHITDKEKFTE-LNKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + I+F  T+ S  +  K+L     +  A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GDREGSVIIFVKTKRSADQLAKMLRYENHKAEAIHGDLSQRQRDRVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG KG ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAKGNALSFISPDDVIRWRAID 350

Query: 361 REANV--SVVWEPAPSVEAIRER 381
           R  N   S   E   S +  R+R
Sbjct: 351 RLINQGESTPRESFRSNKNNRKR 373


>gi|126306068|ref|XP_001381369.1| PREDICTED: similar to Chain C, Structure Of The Human Exon Junction
           Complex With A Trapped Dead-Box Helicase Bound To Rna
           [Monodelphis domestica]
          Length = 404

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  L   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 32  TFDLVGLREDLLRGIYAYGFEKPSAIQQRALKQIIKGRDVIAQSQSGTGKTATFSISVLQ 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 92  CLDIQ------VRETQALILAPTRELAVQIQKVLLALGDYMNVQCHACIGGTNVGDDIRQ 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEAD+MLD GF++ I  +    P   
Sbjct: 146 LDRGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADQMLDKGFKEQIYDVYRYLPPSI 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 206 QVVLISATLPHEILEMTTKFMTDPIRILVRRDELTLEGIKQFFVAVEREEWKFDTVCDLY 265

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++  +ER   ++  R G  RV I
Sbjct: 266 DSLTITQAVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPSRERKFIMKEFRSGVNRVLI 325

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 326 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 385

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 386 EQYYSTQIDEMPMNVADLI 404


>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 188/373 (50%), Gaps = 9/373 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + +   +   G+   ++VQ+  + P ++ +DV+V +Q+G+GKT  F L+  S
Sbjct: 23  TFESMSLREELLRGIYAFGFNKPSAVQQRAIVPVIQGRDVIVQSQSGTGKTAVFSLSALS 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +            P  L ++ TRELA Q  +    L     V +  CIGG S+  +   
Sbjct: 83  MIDLS------IREPQVLILSNTRELAEQSAKVAMALGDFLNVSIHACIGGHSIQDDISK 136

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ+G  IV GTPGR+ D I+ K L + HLK ++LDEADEML  GF+  +  I    P   
Sbjct: 137 LQHGVQIVSGTPGRVFDMIQRKELRVRHLKMLILDEADEMLTKGFKQQVYDIYRYLPPTT 196

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           + ++ SAT+   I  +   +  + +++ +  +      I      +     + + + ++ 
Sbjct: 197 QNVVVSATLPQEILDMTDKFMNNPLKILVKRDELTLEGIKQFFIQVDKEEWKFDTLCDLY 256

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FCST          + EH F VV ++G++SQ+ER   +   R G  RV I
Sbjct: 257 DTLTITQAVIFCSTINKCEWLANKMREHEFTVVQMNGKMSQKERDKIMAEFRQGNKRVLI 316

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV  RG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+++  + Q   R    +
Sbjct: 317 ATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKQEDVRLLRDI 376

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 377 EQYYSTQIDEMPM 389


>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
 gi|143462290|sp|A1D405|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
           181]
          Length = 472

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 125/426 (29%), Positives = 208/426 (48%), Gaps = 18/426 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L +   V  AV +GG+ +  +  
Sbjct: 112 QALMEKPQSF------FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSI 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 166 ALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         + +    +D  +V 
Sbjct: 226 ERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++AI+F  T     R + +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 286 LLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q       
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWL 405

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLA 409
           R+       +              E + E   Q I++   F +      KK         
Sbjct: 406 RIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGKRSRD 465

Query: 410 KHDPEK 415
           + D E+
Sbjct: 466 EMDQEE 471


>gi|52430509|gb|AAH82849.1| DDX5 protein [Xenopus laevis]
          Length = 608

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + EA+  + +   T +Q       L   D++  A TGSGKT+++ L     +  +
Sbjct: 98  SFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 158 -PFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V +NI +     + +I     +    ++D+ +V ++    +
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +         ++   L  
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 457 VLREANQAINPKLLQLVED 475


>gi|115469764|ref|NP_001058481.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|97536398|sp|P35683|IF4A1_ORYSJ RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|53791892|dbj|BAD54014.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|53792733|dbj|BAD53769.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|113596521|dbj|BAF20395.1| Os06g0701100 [Oryza sativa Japonica Group]
 gi|125598400|gb|EAZ38180.1| hypothetical protein OsJ_22532 [Oryza sativa Japonica Group]
 gi|215712230|dbj|BAG94357.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215740601|dbj|BAG97257.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767366|dbj|BAG99594.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 414

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 193/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDYA------VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 394

Query: 359 LFREANVSVVWEPA 372
           + R  NV +   PA
Sbjct: 395 IQRFYNVVIEELPA 408


>gi|118575685|ref|YP_875428.1| superfamily II helicase [Cenarchaeum symbiosum A]
 gi|118194206|gb|ABK77124.1| superfamily II helicase [Cenarchaeum symbiosum A]
          Length = 434

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 206/371 (55%), Gaps = 9/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +   Q + +AL + G+     +QEA +   L  +DV+  A TG+GKT A+ +++
Sbjct: 1   MTKFEELGIKQNVLDALRDMGFEKAFPIQEAAIPVLLTGRDVVGQAHTGTGKTGAYSISM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               L +APTRELAVQ+  E++     T V      GG S+  + 
Sbjct: 61  LQEI-------KEGGGIQGLIVAPTRELAVQITEEVKKFAKYTKVRPVAIYGGQSMGVQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I+V TPGRL DHI+   ++I  +  +VLDEAD MLD+GF DDI+FILD +P 
Sbjct: 114 DALKRGAEILVATPGRLIDHIKRGSISIDRVTHLVLDEADTMLDMGFIDDIQFILDLTPD 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ M +FSAT+   I  L++ Y K+  +  + +++     ID   +++   ++ + +V+ 
Sbjct: 174 EKVMSLFSATMPIEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIRDREKMDYLVDF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +G    IVFCST+       ++L +  +  VA+ G++SQ  R  ++   R  +A++ 
Sbjct: 234 IKENGKGQTIVFCSTKYRTRDVARMLHKRNYGAVAIEGDMSQHRREQSMSRFRTAKAQIL 293

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P + LV++ ++ +      HR GRT RAG KG ++ ++  +     + 
Sbjct: 294 VATDVAARGIDVPRVALVVNYDVPNQEMIYFHRIGRTARAGAKGRAITLVSYSSVSEFDV 353

Query: 359 LFREANVSVVW 369
           + R+    V +
Sbjct: 354 IKRQIKAKVTY 364


>gi|73965229|ref|XP_861744.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 10 [Canis
           familiaris]
          Length = 616

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 186/381 (48%), Gaps = 10/381 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGI--DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           DVA+RG+  D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L
Sbjct: 399 DVASRGLGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDL 458

Query: 360 ---FREANVSVVWEPAPSVEA 377
               REAN ++  +    VE 
Sbjct: 459 ISVLREANQAINPKLLQLVED 479


>gi|17552114|ref|NP_498646.1| Conserved Germline Helicase family member (cgh-1) [Caenorhabditis
           elegans]
 gi|75020328|sp|Q95YF3|CGH1_CAEEL RecName: Full=ATP-dependent RNA helicase cgh-1; AltName:
           Full=Conserved germline helicase 1
 gi|15150636|gb|AAK85443.1|AC006605_5 Conserved germline helicase protein 1 [Caenorhabditis elegans]
          Length = 430

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 11/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ + +   
Sbjct: 45  FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 104

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +           A  A+ I PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 105 IQPA------LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRL 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+V+ TPGR+ D +      + H K +VLDEAD++L   F+  ++ +++  PK+R+
Sbjct: 159 NGTVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 218

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +T+  + +      +N+  E             V    + + +  + R 
Sbjct: 219 VMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGV-TQYYAFVQEKQKVHCLNTLFRK 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 278 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCS 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 338 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQ 397

Query: 362 EANVSVVWEPAP 373
           E    +  EP P
Sbjct: 398 ELRTRI--EPIP 407


>gi|323306983|gb|EGA60267.1| Dbp1p [Saccharomyces cerevisiae FostersO]
          Length = 452

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 186/373 (49%), Gaps = 16/373 (4%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E +    +   T VQ+  +    + +D++  AQTGSGKT  F   L + L        P
Sbjct: 1   MENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVP 60

Query: 72  ASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             A         P AL +APTRELA Q+  E      ++ V   V  GG  +  + R++ 
Sbjct: 61  EKAQSFYSRKGYPXALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVD 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILDSSPK 178
            G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I          S +
Sbjct: 121 RGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVE 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT    I  LA+++  + + +++        +I  R + V   D+ +A++++
Sbjct: 181 NRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILYVDDMDKKSALLDL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   +   A + 
Sbjct: 241 LSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFKANVADIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++      N Q   + 
Sbjct: 301 VATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKG 360

Query: 358 --RLFREANVSVV 368
              +  EAN  V 
Sbjct: 361 LMEILNEANQEVP 373


>gi|50292931|ref|XP_448898.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74664283|sp|Q8TFK8|DED1_CANGA RecName: Full=ATP-dependent RNA helicase DED1
 gi|20086311|gb|AAM08102.1| DED1p [Candida glabrata]
 gi|49528211|emb|CAG61868.1| unnamed protein product [Candida glabrata]
          Length = 617

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 195/388 (50%), Gaps = 16/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA------- 59
           +  ++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   +        
Sbjct: 152 LDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTG 211

Query: 60  --STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                  +   +   + P A+ +APTRELA Q+  E +    ++ V   V  GG  +  +
Sbjct: 212 PAEKAANDGYSYQRKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQ 271

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R++ +G  ++V TPGRL D +    +++S++K +VLDEAD MLD+GF   I  I++   
Sbjct: 272 MREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCD 331

Query: 178 KKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                  + LMFSAT    I  LA+++  D + +++        +I  R + V   D+++
Sbjct: 332 MPPTGERQTLMFSATFPHDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNS 391

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F   A+ G+ SQ ER  AL   R G
Sbjct: 392 ALLDLLAASNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSG 451

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
           RA + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +   
Sbjct: 452 RANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGVATAFFNRDNN 511

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAI 378
           N+ +    +  EAN  +       +  +
Sbjct: 512 NIVKGLYEILEEANQEIPPFLEDCLREV 539


>gi|300783976|ref|YP_003764267.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299793490|gb|ADJ43865.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 534

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 192/369 (52%), Gaps = 7/369 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +  P+ +  ALSE G  +   +Q A +   L  +DVL  AQTGSGKT+AFGLA+ 
Sbjct: 44  KTFAELGLPEPLLRALSEAGINSPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAML 103

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     R      P AL + PTRELA+QV   L  L    G+     +GG++  R+  
Sbjct: 104 ARLADGKARPKR---PRALILVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMAFARQAD 160

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +++ TPGRL DH+R    ++     + LDEAD+M D+GF   +  I+D +P+ 
Sbjct: 161 ALSRGVDLLIATPGRLSDHVRQGTAHLGDCNFIALDEADQMADMGFMPQVREIMDLTPQG 220

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L K Y  D V  ++A      + +D+  + V+  D+    V   
Sbjct: 221 GQRLLFSATLDGDVNRLVKQYLSDPVTHSVAPSTASVTTMDHHVLQVSHQDK--QDVITQ 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V R  + L E      AL G  +Q +R+  L   ++G   V +
Sbjct: 279 IGARDGRTIMFVRTKHHVDRLAERLREQGVNAAALHGGKTQGQRNRVLADFKEGHTPVLV 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGI + D+ LV+H + +++ ++ LHR+GRT RAG  G+ V V   + +R   RL
Sbjct: 339 ATDVAARGIHVDDISLVLHVDPAADHKDYLHRAGRTARAGASGVVVTVATHDQRRMVRRL 398

Query: 360 FREANVSVV 368
              A V   
Sbjct: 399 TDRAGVRAE 407


>gi|168063959|ref|XP_001783934.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162664528|gb|EDQ51244.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 189/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L     V V  C+GG SV  ++R
Sbjct: 100 QQLDYQ------LLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R   L    +K  VLDEADEML  GF+D I  I    P+K
Sbjct: 154 ILQAGVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    V++ +  +      I      +     + + + ++
Sbjct: 214 LQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R  + 
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQD 393

Query: 359 LFREANVSVVWEP 371
           + R  N  +   P
Sbjct: 394 IQRFYNTVIEELP 406


>gi|312371167|gb|EFR19420.1| hypothetical protein AND_22552 [Anopheles darlingi]
          Length = 1161

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 185/358 (51%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 501 EVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPPLEDG 559

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+A+ + PTREL +Q+G++++       +      GG  +  +  +L+ GA I+V TP
Sbjct: 560 DGPIAIIMTPTRELCMQIGKDIKKFSKSLNLRTVCVYGGTGISEQIAELKRGAEIIVCTP 619

Query: 133 GRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D      G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 620 GRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSATF 679

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              +  LA+   K  + V +   +    +++   V++    +   ++ +L  +  + +I+
Sbjct: 680 PRQMEALARRILKKPIEVQVGGRSVVCKEVEQHVVVLEDEAKFFKLLELLGLYQEQGSII 739

Query: 250 -FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
            F   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG+
Sbjct: 740 VFVDKQENADILLKDLMKASYACMSLHGGIDQFDRDSTMNDFKQGRVKLLIATSVAARGL 799

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R A  + R   +S
Sbjct: 800 DVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRYAGDIIRALELS 857


>gi|297845068|ref|XP_002890415.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336257|gb|EFH66674.1| hypothetical protein ARALYDRAFT_472328 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 827

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 189/383 (49%), Gaps = 8/383 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 202 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 260

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 261 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 320

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +   +R+ ++FSA
Sbjct: 321 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 380

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   SDR   ++ +L     K  
Sbjct: 381 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFFRLLELLGEWYEKGK 440

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  ++       + + +  +  ++L G   Q +R + +   +     + IAT VAAR
Sbjct: 441 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKSNVCNLLIATSVAAR 500

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S
Sbjct: 501 GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS 560

Query: 367 VVWEPAP-SVEAIRERDAQRILQ 388
              +P P  ++A+ +    ++ Q
Sbjct: 561 --EQPVPDDLKALADGFMAKVKQ 581


>gi|297792439|ref|XP_002864104.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309939|gb|EFH40363.1| hypothetical protein ARALYDRAFT_918160 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 587

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 196/396 (49%), Gaps = 15/396 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ + + L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 141 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 200

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L E      +    P+ L + P+RELA Q    +E             +   +CIG
Sbjct: 201 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIG 260

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI 
Sbjct: 261 GIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIR 320

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A++     V VN+      + D+      V    
Sbjct: 321 EVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 380

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q++R  A+   
Sbjct: 381 KIVYLLECLQKTSPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 440 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 499

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRERD 382
           N         + L +EA   +    A   + + E +
Sbjct: 500 NQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAE 535


>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 490

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 131/392 (33%), Positives = 208/392 (53%), Gaps = 14/392 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA     Y   T +QE  +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 65  KTFKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVL 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P      L +APTRELA Q+G+  E L +   +  AV +GG+ +  +  
Sbjct: 125 QALL---DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAI 178

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH  + KG ++  LK +++DEAD +LD+ F   I+ IL   P+
Sbjct: 179 ALGKKPHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPR 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  I +L +   +D VRV+I+S   Q         + +    +D  +V 
Sbjct: 239 ERRTYLFSATLSSKIESLQRASLRDPVRVSISSNKYQTVSTLIQHYMFIPFPQKDTYLVY 298

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  H  K+ IVF  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 299 LVNEHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDI 358

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ ++  + +  +HR GRT RAG+ G+++ ++ Q       
Sbjct: 359 LVATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYA 418

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQR 385
           R+       +   P+   E +    R ++AQR
Sbjct: 419 RIEAALGKKLTEYPSEKEEVMTFQSRIQEAQR 450


>gi|50312211|ref|XP_456137.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660243|sp|Q6CIV2|DBP2_KLULA RecName: Full=ATP-dependent RNA helicase DBP2
 gi|49645273|emb|CAG98845.1| KLLA0F23716p [Kluyveromyces lactis]
          Length = 554

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 188/379 (49%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P  + + + + G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 112 IRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPG 171

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    SP   P+ L +APTRELAVQ+ +E     A + +      GGV   ++ 
Sbjct: 172 IVHINAQ-PLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQI 230

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDLQ G  I++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 231 RDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA +Y  D ++V I S     +   + I          DR   
Sbjct: 291 DRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQIVEVLTDFEKRDRLAK 350

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           I+F ST+ +    T  L    +  +A+ G+ +Q ER   L   R GR
Sbjct: 351 HLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---N 351
           + + +ATDVAARGID+  +  VI+ ++  N E+ +HR GRTGRAG  G ++    +   +
Sbjct: 411 SPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKS 470

Query: 352 MQRRAERLFREANVSVVWE 370
           +     ++ REA   +  E
Sbjct: 471 LGAALIKIMREAKQDIPEE 489


>gi|15228722|ref|NP_188870.1| PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1); ATP-dependent
           helicase/ DNA binding / RNA binding [Arabidopsis
           thaliana]
 gi|75335517|sp|Q9LUW6|RH9_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 9
 gi|9293865|dbj|BAB01768.1| DEAD-Box RNA helicase-like protein [Arabidopsis thaliana]
 gi|20268676|gb|AAM14042.1| putative RNA helicase [Arabidopsis thaliana]
 gi|332643099|gb|AEE76620.1| DEAD-box ATP-dependent RNA helicase 9 [Arabidopsis thaliana]
          Length = 610

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 200/373 (53%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +AL  RG   L  +Q+A+L P +  +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 123 ISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFN 182

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L +APTRELA QV +E          +     GG  + ++ R+L  G  
Sbjct: 183 AKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRELNYGID 240

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + VGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL   P KR+ +MFS
Sbjct: 241 VAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFS 300

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I +L K Y  + + ++    + +        Y     +          +  +  
Sbjct: 301 ATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGK 360

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          ++  AL G++SQ +R   L   RDG   + +ATDV
Sbjct: 361 GGKCIVFTQTKR-DADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL +N E  +HR+GRTGRAG+KG ++ +  Q+  R  + + +E 
Sbjct: 420 AARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEV 479

Query: 364 NVSVVWEPAPSVE 376
                  P+ +VE
Sbjct: 480 GSRFNELPSIAVE 492


>gi|241618030|ref|XP_002408280.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215502947|gb|EEC12441.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 1025

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 118/427 (27%), Positives = 200/427 (46%), Gaps = 14/427 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L + 
Sbjct: 356 VSKKVMEVLKKHGFEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTLAFLLPMFRHIL-DQ 414

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ + PTRELA+Q+ ++ +       + V    GG  +  +  DL+ GA 
Sbjct: 415 PPLEDDDGPIAVIMTPTRELAMQITKDCKKFTKSLSLRVVCVYGGTGISEQIADLKRGAE 474

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D      G+  N      VVLDEAD M D+GF   +  I+DS    R+ +
Sbjct: 475 IIVCTPGRMIDMLAANNGRVTNFRRTTYVVLDEADRMFDMGFEPQVMRIVDSVRPDRQTV 534

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+      + + +   +    +++   V++   D+   ++ +L  + 
Sbjct: 535 MFSATFPRQMEALARRILMKPIEILVGGRSVVCKEVEQHIVIINDEDKFFKLLELLGLYQ 594

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K +AIVF   +       K L +     +AL G + Q +R + +   + G+  V IAT 
Sbjct: 595 DKGSAIVFVDKQEHADVLLKDLMKASHNAMALHGGIDQFDRDSTIVDFKAGKVGVLIATS 654

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I  +  R A  L + 
Sbjct: 655 VAARGLDVKHLILVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITDDQGRYAADLSKA 714

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +S    P          D QR+  +       +G + +       K      A   L+
Sbjct: 715 LELSGNPVP---------EDLQRLFNNYKAKQEAEGKKVRGGSGFSGKGFKFDEAESHLK 765

Query: 423 IHRAGLC 429
             +    
Sbjct: 766 SEKKKFQ 772


>gi|47121785|gb|AAT11555.1| vasa-like protein [Copidosoma floridanum]
 gi|47175561|gb|AAT12450.1| vasa protein [Copidosoma floridanum]
          Length = 708

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 189/388 (48%), Gaps = 19/388 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  N+  ++ + + + GY   T +Q+  +   L  +D++  AQTGSGKT AF + +
Sbjct: 279 LNSFDEANLRSLLVDNIKKSGYQIPTPIQKHGIPIVLAGRDLMGCAQTGSGKTAAFLIPI 338

Query: 59  ASTLLAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
              LL +    +   +     P AL +APTRELA+Q+  E       + +   +  GG +
Sbjct: 339 IHNLLLKPREINDMGSLSTVEPRALILAPTRELAIQIHDECRKFSKDSVLKCCLIYGGTA 398

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           V  + + +  G  ++V TPGRL D +    +  S ++ +VLDEAD M+D+GF  D+E ++
Sbjct: 399 VGHQLKQIFYGCDLLVATPGRLKDFVGRGKVVFSAIEYLVLDEADRMIDMGFIGDVEMVI 458

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                         MFSAT    I  LA  +  + + V +       SDI+   + V  S
Sbjct: 459 RHETMTPPGERQTLMFSATFPRDIQELAVKFLNNYIFVAVGIVGSACSDIEQSFLEVKKS 518

Query: 230 DRDNAIVNILRYHGAKNAIV----FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           D+ + +  IL      + +     F   + +       L+++ F   ++ G+  Q+ER  
Sbjct: 519 DKRSKLKEILEEERNNDTLKGILVFVDQKRTADFIAAFLSDNNFPTTSIHGDRLQREREE 578

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL   + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G KG +V
Sbjct: 579 ALNDFKSGRMCILVATAVAARGLDIKNVRFVINFDLPKEIDEYIHRIGRTGRVGNKGKAV 638

Query: 346 FVIPQNMQRRAE----RLFREANVSVVW 369
               +++  R +    ++   AN  +  
Sbjct: 639 SFYDESIDNRIQPDLVKILEMANQPIPE 666


>gi|73964736|ref|XP_533130.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           isoform 1 [Canis familiaris]
          Length = 411

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|2558535|emb|CAA72735.1| RNA helicase (DEAD box) [Danio rerio]
          Length = 700

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 181/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 260 IMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 319

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 320 LQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 379

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+GF  ++      
Sbjct: 380 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS 439

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  K++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 440 PGMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYS 499

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 500 KRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 559

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G   V +AT VAARG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V    P
Sbjct: 560 RLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNP 619

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 620 ESDTPLARSLVK 631


>gi|302341638|ref|YP_003806167.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
 gi|301638251|gb|ADK83573.1| DEAD/DEAH box helicase domain protein [Desulfarculus baarsii DSM
           2075]
          Length = 490

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 4/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +   L++ GY + T +QE  +   L  KDV   AQTG+GKT AF + +   +L  
Sbjct: 30  NLPEPLLRGLADSGYTHCTPIQERTIPLGLAGKDVAGEAQTGTGKTAAFLVPIFYHML-- 87

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+ +    P AL IAPTRELAVQ+  + + +   T + +    GGV   ++ R L+ G 
Sbjct: 88  RDQRTDRQFPAALIIAPTRELAVQIYDDAQQIGRHTDLRMVAVFGGVDYLKQARALREGV 147

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR  D+I+ + L++  +K +V+DEAD + D+GF  D+ +I+   P   R    
Sbjct: 148 DIVVATPGRAIDYIKQRALDLRAVKHLVIDEADRLFDMGFIADLRWIMRRLPPYDRRQSM 207

Query: 186 --SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             SAT+   +  L   +     +V++A   R    +D      +  ++ + ++ +LR  G
Sbjct: 208 LFSATLGYRVLELTYEFMNMPAKVSVAPRQRTVEQVDQELYHCSAPEKMSLLLGLLRREG 267

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +T+ +V      L  +      +SG+L+Q+ R   L+  + G  ++ +AT+V
Sbjct: 268 VDRVMIFANTKRAVDAIAYKLRGNGLPAEGISGDLTQRRRMQLLEQFKSGELKILVATNV 327

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + ++  VI+ ++ ++PE+ +HR GRT RAG  G ++ +           +    
Sbjct: 328 AARGLHVENISHVINYDVPADPEDYVHRIGRTARAGAVGKAITLCCDRYATHLPYVEEYL 387

Query: 364 NVSVV 368
              + 
Sbjct: 388 GEKIP 392


>gi|294852360|ref|ZP_06793033.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
 gi|294820949|gb|EFG37948.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NVSL 07-0026]
          Length = 488

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|288558810|sp|P54824|DDX6_XENLA RecName: Full=ATP-dependent RNA helicase ddx6; AltName:
           Full=ATP-dependent RNA helicase p54; Short=P54H;
           Short=Xp54; AltName: Full=DEAD box protein 6
 gi|213623790|gb|AAI70228.1| P54H protein [Xenopus laevis]
 gi|213623792|gb|AAI70230.1| P54H protein [Xenopus laevis]
          Length = 481

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 179/374 (47%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 97  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 157 LDLKKDCI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 211 LDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNR 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++      + +    +N+  E             V    + + +  +  
Sbjct: 271 QILLYSATFPLSVQKFMTLHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 329

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 330 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 390 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 449

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 450 EQLGTEI--KPIPS 461


>gi|85711917|ref|ZP_01042972.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85694314|gb|EAQ32257.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 421

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 187/369 (50%), Gaps = 6/369 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   I +AL+  G+ N T +Q   L   L  +DV   AQTG+GKT+AF LA  + 
Sbjct: 11  FETLGLHDKIQQALTSAGFENCTPIQALSLPVALSNQDVAGQAQTGTGKTLAFLLATFNR 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+      S  + P A+ +APTRELA+Q+  + + L     +  AV  GG     +++ L
Sbjct: 71  LMQSQK--SSEAGPRAIIMAPTRELAIQIANDAKILTQTCELKTAVIYGGEGYEAQQQQL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   I++GT GR+ D  +     + +++ VVLDEAD M DLGF +DI ++L + P    
Sbjct: 129 ADKPDIIIGTTGRIIDFYKQSLFPLDNIEVVVLDEADRMFDLGFINDIRYLLKAMPDPSE 188

Query: 182 MLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L   FSAT+S  +  LA  +     +V +  + +    I       +  D+   ++ ++
Sbjct: 189 RLNLLFSATLSYRVQELAYEHMNAPTKVEVEPQQKTGVRISEELFYPSKYDKMPLLLTLI 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+    +  + L  +  +V  L+G++ Q++R   L    +G   + +
Sbjct: 249 EEDWPDRAIVFANTKHGCDKVHQWLEINGHRVGLLTGDVPQKKRLKILDDFAEGHLDILV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G +V +  +        +
Sbjct: 309 ATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAVSLACEEYVYNLPAI 368

Query: 360 FREANVSVV 368
                 ++ 
Sbjct: 369 EDYIGHTIP 377


>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
 gi|91207782|sp|Q4IFI0|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 486

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/395 (33%), Positives = 210/395 (53%), Gaps = 14/395 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA  +  Y   T +QE  +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 60  KTFKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVL 119

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P      L +APTRELA Q+G+  E L +   +  AV +GG+ +  +  
Sbjct: 120 QALL---DKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAI 173

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH  + KG ++  LK +++DEAD +LD+ F   I+ IL   P+
Sbjct: 174 ALGKKPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPR 233

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSATIS  I +L +   +D V+V+I+S   Q         + +    +D  ++ 
Sbjct: 234 ERRTYLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLIY 293

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  H  ++ IVF  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 294 LINEHAGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDI 353

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q       
Sbjct: 354 LVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYL 413

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRILQ 388
           R+       +   P    E +    R  +AQRI +
Sbjct: 414 RIEAALGKKLAEYPTEKEEVMAFQSRVEEAQRIAR 448


>gi|90075746|dbj|BAE87553.1| unnamed protein product [Macaca fascicularis]
          Length = 396

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 183/366 (50%), Gaps = 8/366 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +      
Sbjct: 1   MDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ-PYLER 59

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L +APTRELA QV +  +     + +      GG     + RDL+ G  I + T
Sbjct: 60  GDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
            +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A+     
Sbjct: 180 EVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+      T+ +    +  + + G+  Q ER   L   R G+A + IATDVA+RG
Sbjct: 240 IIFVETKRRCDDLTRRMRRDGWPAMCIHGDKGQPERDWVLNEFRSGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR---EAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +   EAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEAN 359

Query: 365 VSVVWE 370
            ++  +
Sbjct: 360 QAINPK 365


>gi|226294425|gb|EEH49845.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 577

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 111 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 170

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 171 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 225 NEAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 284

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 285 IMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 343

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 344 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 403

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 404 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 463

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 464 ELGTEIQPIP 473


>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 515

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NEAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 IMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 515

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NEAVHIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 223 IMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 401

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 402 ELGTEIQPIP 411


>gi|157376468|ref|YP_001475068.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318842|gb|ABV37940.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 429

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 7/378 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   +   I EA+   GY  LT VQ  ++   L   D++  A+TG+GKT AF L L
Sbjct: 1   MK-FDALELNPSILEAIDVCGYQQLTQVQSEVIPVALTGVDLMACAETGTGKTAAFALPL 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +            L + PTRELA+QV   +      T +      GG +++ +R
Sbjct: 60  IQRLIFDEVNLGSLRG---LILTPTRELAIQVAENISRYCQFTALKTLAVYGGANMNPQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D I   GL++S +K +V+DEAD MLD+GF  DIE +      
Sbjct: 117 KALNAGVDILVATPGRLFDFIGQHGLDLSDVKTLVIDEADRMLDMGFVRDIERVKALVAA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +     FSAT S  +  LA+     + +    +++R  S ++    LV    +   +  +
Sbjct: 177 EHITHFFSATYSDDVKALAQKM-LQSPQWINVAQSRSASSVEQEIYLVDKRRKAELLSEL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF S++ S       L     +     G+ +Q  R+ AL+  ++G  RV 
Sbjct: 236 VGRNNWQQVLVFASSKESAEHLQNELKLDGVKSAVFHGDKTQGARNRALEEFKNGMLRVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL  + E+ +HR GRTGRAG KG ++  +  + ++  E 
Sbjct: 296 VATDVAARGLDIQALPLVINLELPFDAEDYIHRIGRTGRAGLKGRAISFVCPSDEKMLEE 355

Query: 359 LFREANVSVVWEPAPSVE 376
           +     + +     P  E
Sbjct: 356 IETLIELKLPRTVLPGYE 373


>gi|126174213|ref|YP_001050362.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997418|gb|ABN61493.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 467

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 184/366 (50%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+ 
Sbjct: 8   LSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADM 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKI-RAKRVRALILTPTRELAVQVEDNISKYAKYLPLTSMAMYGGVDAAPQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + 
Sbjct: 186 ATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A+    SQ  R   L   + GR R  +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGRLRFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLGHI 365

Query: 367 VVWEPA 372
           +V +  
Sbjct: 366 IVRKEI 371


>gi|308474530|ref|XP_003099486.1| CRE-CGH-1 protein [Caenorhabditis remanei]
 gi|308266675|gb|EFP10628.1| CRE-CGH-1 protein [Caenorhabditis remanei]
          Length = 429

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 177/372 (47%), Gaps = 11/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ + +   
Sbjct: 44  FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +           A  A+ I PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 104 IQPA------LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+V+ TPGR+ D +      + + K +VLDEAD++L   F+  ++ +++  PK+R+
Sbjct: 158 NGTVHLVIATPGRILDLMEKGVAKMDNCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +T+  + +      +N+  E             V    + + +  + R 
Sbjct: 218 IMLYSATFPQTVTSFMQKHMHKPYEINLMEELTLLGV-TQYYAFVQEKQKVHCLNTLFRK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 277 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 337 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQ 396

Query: 362 EANVSVVWEPAP 373
           E    +  EP P
Sbjct: 397 ELRTRI--EPIP 406


>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
 gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
          Length = 389

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 193/372 (51%), Gaps = 9/372 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + EAL +  +   T +Q   L   L+ +D++  A TGSGKT AF L +  
Sbjct: 20  TFKSLGLIDPLLEALEQLNFKIPTEIQVQALPHALQGRDIIGVASTGSGKTAAFALPILQ 79

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E           A  +APTRELA Q+ +++E L +  GV     +GG+    +   
Sbjct: 80  KLWEEP------KGLFACIMAPTRELAYQISQQIEALGSAMGVRCVTLVGGMDKMAQAVA 133

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HIVV TPGRL DH    KG ++  LK +VLDEAD +LD+ F   I+ IL + P++
Sbjct: 134 LAKRPHIVVATPGRLNDHLEDTKGFSLRGLKFLVLDEADRLLDMDFGPIIDKILKAIPRE 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + VRV ++ +    S +    + + L  +D  ++ + 
Sbjct: 194 RTTYLFSATMTTKVAKLQRASLSNPVRVEVSEKYSTVSTLLQYYLFIPLVQKDVHLIYLA 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + I+F  T     R + +L    F  V L G+LSQ  R  AL   + G  +V +
Sbjct: 254 NILAQNSIIIFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++ Q      +R+
Sbjct: 314 ATDVASRGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRI 373

Query: 360 FREANVSVVWEP 371
                  +   P
Sbjct: 374 ETTIGKKMELWP 385


>gi|146283021|ref|YP_001173174.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
 gi|145571226|gb|ABP80332.1| ATP-dependent RNA helicase SrmB [Pseudomonas stutzeri A1501]
          Length = 455

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 191/372 (51%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A + P L  +D+ V+AQTGSGKT AF L + + L+ + 
Sbjct: 19  LHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNRLIGDA 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     AL + PTRELA Q  +E+E     T +   +  GG     +   L+    
Sbjct: 79  ---QPRVDVRALILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++GTPGRL +H+    L +  ++ +V+DEAD MLD+GF +D++ ++    K+++ L+FS
Sbjct: 136 VLIGTPGRLIEHLNAGSLILKDVEILVIDEADRMLDMGFAEDMQRLVGECQKRQQTLLFS 195

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     +AK  +               S          ++ ++  +  +L     
Sbjct: 196 ATSGGAGLREMVAKVLRDPLHLQLNRVSELNESTRQQIITADDVAHKEKLVHWLLANESY 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F +TRA   R    L     +V  L GE  Q+ER  A++ ++ G  +V +ATDVA
Sbjct: 256 QKAVIFTNTRAQADRLYGHLVASDIKVFVLHGEKDQKERKLAIERLKQGGVKVLVATDVA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       + R   
Sbjct: 316 ARGLDIEGMDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSIERYLK 375

Query: 365 VSVVWEPAPSVE 376
                     ++
Sbjct: 376 QRFEKRVIKGLK 387


>gi|241563473|ref|XP_002401718.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215501910|gb|EEC11404.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 371

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 193/364 (53%), Gaps = 10/364 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAIAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTPYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEGINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  L++ Y  + VR+ + + N+  ++I   ++ ++  ++ +  +    
Sbjct: 172 QVLMFSATMPKHIIALSQKYLNNPVRITVGATNKAAAEIKQESLHISDKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQHQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGYALSFISPDDVIRWRAID 350

Query: 361 REAN 364
           R  N
Sbjct: 351 RLVN 354


>gi|195579332|ref|XP_002079516.1| GD23992 [Drosophila simulans]
 gi|194191525|gb|EDX05101.1| GD23992 [Drosophila simulans]
          Length = 547

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 10/377 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   ++  +I E + + GY   T +Q+  +      +D++  AQTGSGKT +F L +
Sbjct: 130 IKNFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPI 189

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S LL +         P A+ ++PTRELA+Q+  E      +T + + +  GG S   + 
Sbjct: 190 ISKLLDDPQDLEFGR-PQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQN 248

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G+H+++ T GRL D +    +     + VVLDEAD MLD+GF + +  ++     
Sbjct: 249 DCITKGSHVLIATLGRLLDFVDRTFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTM 308

Query: 179 KRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + +    MFSAT    I  LA  +  + V V I       SD+      V+  ++    +
Sbjct: 309 RPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAK-L 367

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +
Sbjct: 368 MEILREEADGTIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 427

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
           V IAT VA+RG+D+ +++ VI+ ++  N ++ +HR GRTGR G  G +      +  R  
Sbjct: 428 VLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPDQDRLI 487

Query: 355 --RAERLFREANVSVVW 369
                ++   A  +V  
Sbjct: 488 AADLIKILDGAGQTVPE 504


>gi|71650107|ref|XP_813758.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70878673|gb|EAN91907.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 630

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/400 (28%), Positives = 190/400 (47%), Gaps = 24/400 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F   N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L
Sbjct: 129 MESFASMNTPLALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPL 188

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S++L      +      S+P AL +APTREL++Q+  E      +TG+   V  GG   
Sbjct: 189 VSSILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADP 248

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  +L  G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+ 
Sbjct: 249 RHQVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQ 308

Query: 175 SSPKKRRMLM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                           +SAT    I  LA+ +      + +        +I      V  
Sbjct: 309 GQESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED 368

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +D+   ++ +L  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+
Sbjct: 369 NDKREHLLRLLHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALK 428

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           M +    +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G ++   
Sbjct: 429 MFKSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISF- 487

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
                      F E N ++V +  P +    +   Q+I+ 
Sbjct: 488 -----------FNEKNRNIVDDLVPLLNETHQNVLQQIMD 516


>gi|224098856|ref|XP_002311293.1| predicted protein [Populus trichocarpa]
 gi|222851113|gb|EEE88660.1| predicted protein [Populus trichocarpa]
          Length = 496

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/423 (27%), Positives = 209/423 (49%), Gaps = 20/423 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F ++   +   +   E G  N T VQ   +   L  +DVL  AQTGSGKT AF L + 
Sbjct: 62  TLFSDLGLSEWALQTCKELGMKNPTQVQSHCIPKILSGRDVLGLAQTGSGKTAAFALPIL 121

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL I PTRELA Q+  +     +   +  AV +GG+ +  + +
Sbjct: 122 HRLAEDP------FGVFALVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAK 175

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            L    H+V+ TPGR+   +    ++   S  K +VLDEAD ++D+GF++++  +    P
Sbjct: 176 TLMGRPHVVIATPGRIKVLLENPDISPVFSRTKFLVLDEADRLIDVGFQEELRVVFKCLP 235

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ L+FSAT++  + TL +  +  A         +    ++ + + +  + ++  +V 
Sbjct: 236 KSRQTLLFSATMTSELQTLLELSENKAYFYEEYEGFKTVDTLNQQYIQMPKNVKEVYLVY 295

Query: 238 I---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I   +   G ++AI+F S  ++    + +L E   +   L    SQ  R  +L   + G+
Sbjct: 296 ILSKMEEMGIRSAIIFVSACSTCRLLSSLLKELDHEPATLYSLESQSARLASLHRFKSGQ 355

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + IATD+A+RG+D+P ++LVI+ +L  +P + +HR GRT RAGR+G++V ++ Q+  +
Sbjct: 356 ASILIATDLASRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAGREGLAVSLVAQHDGK 415

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER----DAQRILQDPLF---LDSIQGDEKKMVDVL 407
             + +  E             E + +      A+R+ +  +     D +  + KK     
Sbjct: 416 LMKAIEAEVGKQFEKFECKENEVLSDITKVYKARRVAKMKMMDDGFDELVKERKKQKQKS 475

Query: 408 LAK 410
           LA+
Sbjct: 476 LAE 478


>gi|168026095|ref|XP_001765568.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683206|gb|EDQ69618.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 189/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDVMGLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L     V V  C+GG SV  ++R
Sbjct: 100 QQLDYQ------LLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R   L    +K  VLDEADEML  GF+D I  I    P+K
Sbjct: 154 ILQAGVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    V++ +  +      I      +     + + + ++
Sbjct: 214 LQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R  + 
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQD 393

Query: 359 LFREANVSVVWEP 371
           + R  N  V   P
Sbjct: 394 IQRFYNTVVEELP 406


>gi|159466510|ref|XP_001691452.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
 gi|158279424|gb|EDP05185.1| eukaryotic initiation factor 4A-like protein [Chlamydomonas
           reinhardtii]
          Length = 413

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 191/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F+  N+ + +   +   G+   +++Q   + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 39  FESFDQMNLHENLLRGIYAYGFEKPSAIQSKGIVPFTKGLDVIQQAQSGTGKTATFCAGI 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +         ++   AL +APTRELA Q+ + +  L     V    C+GG SV  + 
Sbjct: 99  LNNIDYN------SNECQALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDA 152

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +VVGTPGR+ D +R + L    +K   LDEADEML  GF+D I  I    P 
Sbjct: 153 RILGAGVQVVVGTPGRVFDMLRRRYLRADSIKMFTLDEADEMLSRGFKDQIYDIFQLLPP 212

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 213 KLQVGVFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCD 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  + E    V A  G++ Q  R   ++  R G +RV
Sbjct: 273 LYETLAITQSVIFANTRRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  +
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQ 392

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + R  N  +   P+   + I
Sbjct: 393 DIQRFYNTVIEELPSNVADLI 413


>gi|302308377|ref|NP_985263.2| AER408Wp [Ashbya gossypii ATCC 10895]
 gi|299789426|gb|AAS53087.2| AER408Wp [Ashbya gossypii ATCC 10895]
          Length = 398

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 180/375 (48%), Gaps = 11/375 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   G+   +++Q   +   +R KDV+  AQ+G+GKT  F + +  
Sbjct: 24  TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       S +    AL ++PTRELA Q+ + +  L     VV   C GG ++ ++   
Sbjct: 84  VID------SSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS---P 177
           +  G H++ GTPGR+ D I+ + +N  H+K +VLDEADE+L        +     +    
Sbjct: 138 VNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPS 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             + +++ +      +    K        +    E        Y   +     + + + +
Sbjct: 198 SVQVVVVSATMSKDVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+T+  V   +  L ++ F V ++ G++ Q +R   +   R G +RV
Sbjct: 258 LYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    + +
Sbjct: 318 LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK 377

Query: 358 RLFREANVSVVWEPA 372
            + +  ++ +   PA
Sbjct: 378 SIEKHYSIKIKPMPA 392


>gi|322502866|emb|CBZ37948.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +   
Sbjct: 32  FEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEK 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L     G+ V V  GG ++  +   
Sbjct: 92  VD------TRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILR 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  HI+V TPGR+ D    K +++SH   +VLDEAD++L   F + I+ +    P + 
Sbjct: 146 LTSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQL 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    + T A+ +  +   +N+  E             V    + + +  +  
Sbjct: 206 QSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGV-TQYYAFVEERQKIHCLNTLFN 264

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  + 
Sbjct: 265 KLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 324

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+ 
Sbjct: 325 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIE 384

Query: 361 REANVSVVWEPA 372
           +E +  +   PA
Sbjct: 385 QELDTEIKPIPA 396


>gi|322495292|emb|CBZ30595.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 405

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +   
Sbjct: 32  FEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEK 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L     G+ V V  GG ++  +   
Sbjct: 92  VD------TRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILR 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  HI+V TPGR+ D    K +++SH   +VLDEAD++L   F + I+ +    P + 
Sbjct: 146 LTSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQL 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    + T A+ +  +   +N+  E             V    + + +  +  
Sbjct: 206 QSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGV-TQYYAFVEERQKIHCLNTLFN 264

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  + 
Sbjct: 265 KLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 324

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+ 
Sbjct: 325 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIE 384

Query: 361 REANVSVVWEPA 372
           +E +  +   PA
Sbjct: 385 QELDTEIKPIPA 396


>gi|195163860|ref|XP_002022767.1| GL14575 [Drosophila persimilis]
 gi|194104790|gb|EDW26833.1| GL14575 [Drosophila persimilis]
          Length = 1243

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 549 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPNLDE 607

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V T
Sbjct: 608 GDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCT 667

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 668 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 727

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 728 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESKFFKLLELLGIYQEAGSI 787

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 788 IVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 847

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 848 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSG 907

Query: 368 VWEPA 372
              PA
Sbjct: 908 CLVPA 912


>gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase-like [Jannaschia sp. CCS1]
 gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
          Length = 451

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 192/378 (50%), Gaps = 1/378 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G+   T +Q   +   L   D++  AQTG+GKT+AFGL L   LL+ +
Sbjct: 26  LKPILAKTLKTAGFSEPTPIQNQAIPLALDGHDIMGLAQTGTGKTLAFGLPLLEHLLSLH 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P +A  AL +APTREL  Q+   L      T V +A  +GG S+ R+   L  G  
Sbjct: 86  GKPEPKTA-RALILAPTRELVNQIADSLRVFTQNTPVKIATVVGGQSIGRQISTLSRGTD 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + +++S +K +VLDEAD+MLDLGF   +  I  +    R+ ++FS
Sbjct: 145 ILVATPGRLMDLMDRRAIDLSTVKHLVLDEADQMLDLGFIHALRKIAPALGTPRQTMLFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y  +  +V ++   +    +      +    +   +  +L       
Sbjct: 205 ATMPKQMEELASAYLSNPKKVQVSPPGKAADKVTQVVHFMPKPAKPAKLREVLNEDPDAL 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  K L    +   ++ G  SQ +R  A++  RDG  ++ +ATDVAAR
Sbjct: 265 VLVFGRTKHGCEKLMKGLVADGYNAASIHGNKSQGQRDRAIKAFRDGTIKILVATDVAAR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  VI+ EL   P+N +HR GRT RAGR+G ++            ++ +   +S
Sbjct: 325 GIDIPGVAYVINYELPDTPDNYVHRIGRTARAGREGEAIAFCSAEEVDLLVQIEKVMKMS 384

Query: 367 VVWEPAPSVEAIRERDAQ 384
           +        EA++    Q
Sbjct: 385 IPVASGTRPEAVKAEKPQ 402


>gi|156549439|ref|XP_001603249.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 795

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 186/370 (50%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +++ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 262 FDDSLIKSIRKHEYTQPTPIQAQSIPVALSGRDLIGIAKTGSGKTAAFVWPMLVHIMDQK 321

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL+ Q+  E +       + V  C GG S   + + L++GA 
Sbjct: 322 E-LDSGDGPIGLILAPTRELSQQIYHEAKKFGKVYNIRVCCCYGGGSKWEQSKALESGAE 380

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+S +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 381 IVVATPGRIIDLVKMKATNLSRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 440

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRYHG 243
           AT    I  LA++   D +R+        ++D+    ++   +          NI+ Y  
Sbjct: 441 ATFKKRIEKLARDALTDPIRIVQGDVGEANTDVTQHVIVFYKNPTGKWTWLNQNIVEYLS 500

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           + + ++F + + +       L    ++V+ L G++ Q ER+  +   +     + +ATDV
Sbjct: 501 SGSLLIFVTKKLNAEELANNLKLKEYEVLLLHGDMDQVERNKVITSFKKKTVSILVATDV 560

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  VI+ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R  
Sbjct: 561 AARGLDIPHIRTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGHLVR-- 618

Query: 364 NVSVVWEPAP 373
           N+    +  P
Sbjct: 619 NLEGANQEVP 628


>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 479

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 186/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L +  Y   T VQ   +   L   DV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLLQRLVQHGPE 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFERELNAVFAALPAQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I T+A    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FTDDIRTMAAGILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENNWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAILDKAGYSVDTIHGDKPQPARLRALERFKTGEVSMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDNLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|157804046|ref|YP_001492595.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
 gi|157785309|gb|ABV73810.1| ATP-dependent RNA helicase RhlE [Rickettsia canadensis str. McKiel]
          Length = 410

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/409 (31%), Positives = 207/409 (50%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L +  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPIAMIGSDILASSQTGSGKTLAYLLPVID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIYSTLNKVTRYYKINSAVLIGGEPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+   I TL++ Y  + VR+ + + N+  ++I   ++ +A  ++ +  +    
Sbjct: 172 QFLMFSATMPKHIITLSQKYLNNPVRITVGANNKAAAEIKQESIHIADKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  TR S  +   +L     +  A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 DNREGSVIIFVKTRRSADQLANMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I        R  +
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPEDVIRWRAID 350

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ-RILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       + +  R+R    R   D    +S   + KK  D
Sbjct: 351 RLVNK-GESTPRSEFRNGKNNRKRSFSTRADSDSKKFNSFDNNRKKTFD 398


>gi|268575270|ref|XP_002642614.1| C. briggsae CBR-CGH-1 protein [Caenorhabditis briggsae]
 gi|187032079|emb|CAP28848.1| CBR-CGH-1 protein [Caenorhabditis briggsae AF16]
          Length = 429

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 11/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ + +   
Sbjct: 44  FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTGQDILARAKNGTGKTGAYCIPVIEK 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +           A  A+ I PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 104 IQPA------LKAIQAMVIVPTRELALQTSQICVELSKHIQLKVMVTTGGTDLRDDIMRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+V+ TPGR+ D +      + + K +VLDEAD++L   F+  ++ +++  PK+R+
Sbjct: 158 NGTVHLVIATPGRILDLMEKGVAKMENCKTLVLDEADKLLSQDFQGILDRLINFLPKERQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +TT  + +      +N+  E             V    + + +  + R 
Sbjct: 218 IMLYSATFPQTVTTFMQKHMHKPYEINLMEELTLLGV-TQYYAFVQEKQKVHCLNTLFRK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 277 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 337 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQ 396

Query: 362 EANVSVVWEPAP 373
           E    +  EP P
Sbjct: 397 ELRTRI--EPIP 406


>gi|307182555|gb|EFN69748.1| ATP-dependent RNA helicase bel [Camponotus floridanus]
          Length = 692

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 198/393 (50%), Gaps = 24/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 207 ITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPI 266

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +     R  P  A         PL L +APTRELA Q+  E      ++ +  AV  
Sbjct: 267 LNQIYESGPRPPPVQANSSGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVY 326

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I
Sbjct: 327 GGSNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQI 386

Query: 170 EFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I+           + LMFSAT    I  LA+++  + + + +        +I  + V 
Sbjct: 387 RRIVQEDNMPPTGERQTLMFSATFPKEIQMLARDFLSNYIFLAVGRVGSTSENITQKIVW 446

Query: 226 VALSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           V   D+ + ++++L+     +       +VF  T+       + LA   + V ++ G+ +
Sbjct: 447 VEEHDKRSYLLDLLQASNFSDPSAESLTLVFVETKKGADMLEEYLATMGYPVTSIHGDRT 506

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER  AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G
Sbjct: 507 QREREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMG 566

Query: 340 RKGMSVFVI---PQNMQRRAERLFREANVSVVW 369
             G++         N+ R    L  EAN  +  
Sbjct: 567 NLGLATSFFNHKNHNLVRDLVSLLIEANQELPP 599


>gi|119499912|ref|XP_001266713.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143019652|sp|A1CW14|HAS1_NEOFI RecName: Full=ATP-dependent RNA helicase has1
 gi|119414878|gb|EAW24816.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 622

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/470 (24%), Positives = 215/470 (45%), Gaps = 14/470 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+++ G+  +T +Q   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 147 LTEKTLKAINDMGFDTMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML--SA 204

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + ++PTRELA+Q+      L         + IGG +   E   L  G +
Sbjct: 205 LRFKPRNGTGVIVVSPTRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVN 264

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH++        +LK +V+DEAD +L++GF D++  I+   P + R  M 
Sbjct: 265 LLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTML 324

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 325 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 384

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 385 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICT 444

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  +  +     + L 
Sbjct: 445 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAKGRSLMFLQPSEVGFLKHL- 503

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +   
Sbjct: 504 KEARVPVVEFEFPANKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSLRSVFDV 563

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                +++ +    +      + L +   R +   +  +   GS+ + KG
Sbjct: 564 HKLDLVKVAKGFGFSTPPRIDIQLGASLSRDKKQQQQGRRNYGSQPHSKG 613


>gi|242034035|ref|XP_002464412.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
 gi|241918266|gb|EER91410.1| hypothetical protein SORBIDRAFT_01g017760 [Sorghum bicolor]
          Length = 507

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 135 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 195 IDPEK------TAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 248

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 249 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQ 308

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 309 LLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 367

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 368 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 427

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 428 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQ 487

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 488 ELGTEIKTIP-PQID 501


>gi|229591936|ref|YP_002874055.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
 gi|229363802|emb|CAY51237.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L  +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 15  LHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILNRLI--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L + PTRELA Q  +E+E     T +   +  GG     +   L+    
Sbjct: 72  GPAKVRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRKVPD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ + +    L++  ++ +VLDEAD MLD+GF DD++ ++     +++ ++FS
Sbjct: 132 ILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVAECINRQQTMLFS 191

Query: 187 ATI--SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   S     +AK              +   +             ++  +  +L     
Sbjct: 192 ATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVHKEQILNWLLANETY 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AIVF +TRA+  R    L    ++   L GE  Q++R  A+  ++ G  ++ +ATDVA
Sbjct: 252 QKAIVFTNTRAAADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKAGGVKILVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ ++  + +  +HR GRTGRAG  G+++ +I          + R   
Sbjct: 312 ARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIERYLK 371

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 372 QSFERRTIKEVK 383


>gi|156550255|ref|XP_001602397.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 715

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 184/372 (49%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F N P ++ E + ++ +   + +Q       L  KD++  AQTG+GKT+AF L     + 
Sbjct: 279 FRNYPDILVE-IRKQNFEKPSPIQCQAWPILLSGKDMIGIAQTGTGKTLAFLLPALIHID 337

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++   S  S P  L +APTRELA+Q+ +E+   Y   G+      GG    ++   +  
Sbjct: 338 NQDTPRSERSGPTVLVMAPTRELALQIEKEVNK-YYYHGIKAVCVYGGGDRKKQMNIVSK 396

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D I+ + L++  +  +VLDEAD MLD+GF   I   L      R+ +
Sbjct: 397 GVEIVIATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRPDRQTV 456

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT  P +  LA++Y K  + V + S + +    +  +  +V   ++ + + +     
Sbjct: 457 MTSATWPPGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLKDFFHNM 516

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +  V      LA       ++ G   Q +R  AL+ ++ G   + +AT
Sbjct: 517 APSDKVIVFFGKKCKVDDIGSDLALSGVACQSIHGGREQADREQALEDIKTGDVNILLAT 576

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
           DVA+RGID+ D+  V + +   + E  +HR GRTGRAG+ G S+ ++ +      +   +
Sbjct: 577 DVASRGIDIEDITHVFNYDFPRDIEEYVHRVGRTGRAGKTGESISLVTRRDWGLTKELIK 636

Query: 359 LFREANVSVVWE 370
           +  EA   +  E
Sbjct: 637 ILEEAEQEIPTE 648


>gi|162462542|ref|NP_001104874.1| translation initiation factor [Zea mays]
 gi|2286151|gb|AAB64289.1| translation initiation factor [Zea mays]
          Length = 414

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILGSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVF 393

Query: 358 RLFREANVSVVWEPA 372
            + +  NV +   PA
Sbjct: 394 DIQKFYNVLIEELPA 408


>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
          Length = 507

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 187/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 33  EPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 92

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 93  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 151

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT
Sbjct: 152 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSAT 211

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V ++++  N   S I    V V   ++ +  ++++  +  + A+
Sbjct: 212 FSDEIRKMAAGILRSPVDISVSPPNATASKIKQWVVPVDKRNKPDLFMHLVAQNRWERAL 271

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 272 VFVKTRNGVDYLALMLEKTGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 331

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 332 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 391

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 392 REEEPGFEA 400


>gi|319897620|ref|YP_004135817.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
 gi|317433126|emb|CBY81500.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
          Length = 415

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 199/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSDLPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + +
Sbjct: 71  LLTYQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase  [Aspergillus fumigatus Af293]
 gi|74669652|sp|Q4WJE9|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
          Length = 472

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/426 (29%), Positives = 206/426 (48%), Gaps = 18/426 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+     F        L +APTRELA Q+ +  E L +   V  AV +GG+ +  +  
Sbjct: 112 QALMENPQSF------FGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSI 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 166 ALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         + +    +D  +V 
Sbjct: 226 ERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R + +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 286 LLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q       
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWL 405

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLA 409
           R+       +              E + E   Q I++   F +      KK         
Sbjct: 406 RIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIMEMKNFDEKRGTKAKKFGKGKRSRD 465

Query: 410 KHDPEK 415
           + D E+
Sbjct: 466 EMDQEE 471


>gi|319775175|ref|YP_004137663.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|329122905|ref|ZP_08251476.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
 gi|317449766|emb|CBY85973.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
 gi|327471836|gb|EGF17276.1| ATP-dependent RNA helicase RhlB [Haemophilus aegyptius ATCC 11116]
          Length = 415

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL + PTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILVPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|299768643|ref|YP_003730669.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
 gi|298698731|gb|ADI89296.1| putative ATP-dependent RNA helicase [Acinetobacter sp. DR1]
          Length = 644

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 152/584 (26%), Positives = 238/584 (40%), Gaps = 37/584 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTAPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       DR    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 63  NALAGQETVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +  I  LA    KD +R+ I + +  ++DI            + 
Sbjct: 183 ELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + +   L       +       +E +     + R         +    + +         
Sbjct: 363 RGKIRALEEYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGSRDGRRGGGGFGGG 422

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SWF 469
              +  + F R        P           R  F  + R  +     R   +G      
Sbjct: 423 RRFEGESNFKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFEDRP 482

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
               GS      R       R  G N +        P         D  D  R      K
Sbjct: 483 RREFGSD---RPR-------REGGFNDK--------PRF-------DSNDDNRGNRVDYK 517

Query: 530 GIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             +    G       G +    +S + +    +     +   + 
Sbjct: 518 PRRESGFGDRPKRSFGGEDRPRRSFDDKPRGERPAFGGEDRPRR 561


>gi|296270955|ref|YP_003653587.1| DEAD/DEAH box helicase domain-containing protein [Thermobispora
           bispora DSM 43833]
 gi|296093742|gb|ADG89694.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
           43833]
          Length = 618

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/353 (35%), Positives = 183/353 (51%), Gaps = 10/353 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F ++   P+ I +AL   G V    +QE  L   L  +D++  A+TG+GKT AFG+  
Sbjct: 8   KTFRDLGVIPE-IADALETEGIVTPFPIQEMALPLALSGQDIIGQARTGTGKTYAFGIPT 66

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +            P  L +APTRELA+QV  +L     K G  +    GG +   + 
Sbjct: 67  LQLI---GKPRKNRKKPRGLILAPTRELALQVTEDLVLAAGKLGTRITTVYGGRAYEPQI 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  +VVGTPGRL D +  K L++S +  +VLDEAD MLDLGF  DIE I+   P+
Sbjct: 124 EALKNGVDVVVGTPGRLLDLVNQKHLDLSQIAILVLDEADRMLDLGFLPDIERIIKLLPE 183

Query: 179 KRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           KR+ ++FSAT+   I   +    N            E                 D+   +
Sbjct: 184 KRQTMLFSATMPGEIVALSRRYLNRPTHIRAEIAEIEAETKPRTTQFVYRTHRMDKIEIL 243

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L+      A+VFC T+ +       L +  F V A+ G+LSQ +R  AL+  R+G+ 
Sbjct: 244 ARVLQSTELTLAMVFCETKRACDMVANQLRDRGFAVAAVHGDLSQSQREQALRAFRNGKI 303

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            V +ATDVAARGID+ D+  VI+ +L  + +  +HR GRTGRAGR G+++  +
Sbjct: 304 NVLVATDVAARGIDVDDVTHVINYDLPQDEKTYIHRIGRTGRAGRSGVAITFV 356


>gi|225717006|gb|ACO14349.1| Eukaryotic initiation factor 4A-III [Esox lucius]
          Length = 406

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 94  CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 148 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 328 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|237845101|ref|XP_002371848.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211969512|gb|EEB04708.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221501473|gb|EEE27248.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 657

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/395 (29%), Positives = 195/395 (49%), Gaps = 19/395 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++   PQ I + L ERG    T +Q   +   L+ +D++  A TGSGKT+ F L +
Sbjct: 207 FRNFKDMRFPQPILKGLQERGISYPTQIQMQGIPAILQGRDIIGIAFTGSGKTLVFSLPM 266

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L    R  + P   P  L + P+RELA Q      +            +     IG
Sbjct: 267 IMGALESEIRSPYLPGEGPFGLVVCPSRELASQTNDVCSFFCKKLEDGGYPALRCVCIIG 326

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G S   + ++++ G H +V TPGRL D +  + L +   + +  DEAD M+D+GF +++ 
Sbjct: 327 GCSAVEQAKEVRQGVHCIVATPGRLTDMLNKRRLALQQCEYLCFDEADRMVDMGFEEEVR 386

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +LDS   +R+ L+FSAT+   I   AK+   D + VN+      + D+      V   +
Sbjct: 387 NVLDSFGHQRQTLLFSATMPRKIQEFAKSALIDPLVVNVGRAGAANLDVVQEVEYVKQEN 446

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +++ L+       ++FC  +  V    + L        A+ G L+Q+ERS A++  
Sbjct: 447 KLPYLLHCLQKTAPP-VLIFCENKKDVDDIQEYLLLKGVDAAAVHGGLAQEERSEAVRAF 505

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+GR  V + TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G++   + +
Sbjct: 506 REGRKDVLVGTDVASKGLDFPAIQHVINFDMPKEIENYVHRIGRTGRCGRTGVATTFVNK 565

Query: 351 NMQR----RAERLFREANVSVVWEPAPSVEAIRER 381
           N +       + L  EA   +     P +EA+  R
Sbjct: 566 NQEETVLLDLKALLIEAGQRMP----PFLEALDSR 596


>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta]
          Length = 643

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 189/378 (50%), Gaps = 12/378 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P ++ E + ++ +   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 228 FQAYPDILTE-IRKQNFEKPSPIQCQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHID 286

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGVSVHRE 117
            +         P  L +APTRELA+Q+ +E+     +         +     GG S   +
Sbjct: 287 GQVTPRDERPGPNVLVMAPTRELALQIEKEVAKYSYRGIKAYLKNYLRVCVYGGGSRKAQ 346

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              + +G  IV+ TPGRL D ++   L++S +  ++LDEAD MLD+GF   I   L    
Sbjct: 347 VATVSSGVQIVIATPGRLNDLVQANILDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVR 406

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ +M SAT    +  LA++Y K+ ++V + S +      +  +  +V   ++   + 
Sbjct: 407 PDRQTVMTSATWPQGVRRLAQSYMKNPLQVFVGSLDLAAVHSVTQKIYMVDQDEKTEYMH 466

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              +  G  + AIVF   ++ V   +  LA    +  ++ G+  Q +R  AL+ ++ G  
Sbjct: 467 QFFQEMGPHDKAIVFFGKKSKVDDISSDLALSNIECQSIHGDRDQADREQALEDLKSGTV 526

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     
Sbjct: 527 QILLATDVASRGIDIEDVTHVLNYDFPRDIEEYVHRVGRTGRAGRTGESITFMTRQDWHH 586

Query: 356 AE---RLFREANVSVVWE 370
           A+    +  EAN  V  E
Sbjct: 587 AKALIDILEEANQEVPEE 604


>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 730

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/424 (28%), Positives = 218/424 (51%), Gaps = 20/424 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    + + I   LS   + + T +Q   +   L  KD++ +A TGSGKT AF + +  
Sbjct: 236 MK----LSRPILRGLSSLNFEDPTPIQSKTIPVALLGKDIVGAAVTGSGKTAAFVVPILE 291

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    +   +     L I PTRELA+Q     + + A T + + +C+GG+S+  + ++
Sbjct: 292 RLVYRPKKIPTSR---VLIICPTRELAMQCHNVAKRIAAFTDITLCLCVGGLSLKVQEQE 348

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    I++ TPGR  DH+R     ++ +++ +V+DEAD ML+ GF D++  I+   PK 
Sbjct: 349 LRKRPDIIIATPGRFIDHVRNSQGFSVDNIEIMVIDEADRMLEDGFADELNEIVKLCPKS 408

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIV 236
           R+ ++FSAT++  +  L +      VR+ + ++      +    + V       R   +V
Sbjct: 409 RQTMLFSATMTEKVDDLVRLSLNRPVRIFVDAKKATAKRLVQEFIRVRPQREQLRPAMLV 468

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I +    +  I+F   +A   +   +          + G LSQ++R  AL+  RDG+  
Sbjct: 469 HICKTFFHRRVIIFFRNKAFAHKMRIIFGLVGLNATEIHGSLSQEQRVRALEDFRDGKVD 528

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVA+RG+D+  +E VI+ E  ++ E  LHR GRT RAGR G ++ ++ +N ++  
Sbjct: 529 YLLATDVASRGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGENDRKVI 588

Query: 357 ERLFREA-----NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + + + +     NV       P VEAI +   +  L+D +    +  +EK+   + +A+ 
Sbjct: 589 KDVLKSSENQHDNVVSRNLDFPRVEAIGKELEE--LEDTVK--QVMEEEKQERHIKIAER 644

Query: 412 DPEK 415
           D +K
Sbjct: 645 DLKK 648


>gi|210623599|ref|ZP_03293925.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
 gi|210153469|gb|EEA84475.1| hypothetical protein CLOHIR_01875 [Clostridium hiranonis DSM 13275]
          Length = 371

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 181/363 (49%), Gaps = 6/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I + L + G    T VQE  +      +DV+  +QTG+GKT+AF +     +   
Sbjct: 7   NIKEDIIDILKKSGITKPTPVQEECIGIIKDGRDVIAQSQTGTGKTLAFLIPTLEKINKN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S      AL + PTRELA+Q+  E E L    G+ +    GG  +  +   L+   
Sbjct: 67  KKDVS------ALILTPTRELALQISNEAEKLAEPLGLNILSAYGGKDIKSQVNKLKGNI 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+ TPGRL DH+  K +++ +L   +LDEAD+ML +GF+++I+ IL  + KKR+ L F
Sbjct: 121 HLVIATPGRLLDHLDRKTISLKNLDIFILDEADQMLLMGFKNEIDAILKETNKKRQSLFF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  LA  Y  D   + I S+      I+   V      + +++  +L      
Sbjct: 181 SATMDSQVKKLAYRYTNDPAFIEIKSQEVTLEKINQSIVKTTDRRKFDSLCKVLDGDNPF 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC T+    +  + +    +    +  ++SQ +R   ++  R+ + +  IATDVA+
Sbjct: 241 MAIIFCRTKRRADKLEEDMGSRGYNCEKIHSDISQAKRERIMKNFRNMKTQYLIATDVAS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  + + +     E+ +HR GRTGRAG  G +   +     +  E +  +   
Sbjct: 301 RGLDITGVTHIYNYDFPETAEDYIHRIGRTGRAGENGDTCAFVTDKNTKILEDVENKLGF 360

Query: 366 SVV 368
            + 
Sbjct: 361 KIK 363


>gi|195441137|ref|XP_002068383.1| GK13754 [Drosophila willistoni]
 gi|194164468|gb|EDW79369.1| GK13754 [Drosophila willistoni]
          Length = 839

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 180/370 (48%), Gaps = 5/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +A+ +  Y   TS+Q   +   L  +D++  A+TGSGKT AF   L   L+ + 
Sbjct: 308 FDDQLIKAVRKAEYTQPTSIQAQAVPCALAGRDIIGIAKTGSGKTAAFIWPLLMHLMDQR 367

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 368 E-LKAGEGPIGLILAPTRELSLQIYNEAKRFGKVYNLRVVCCYGGGSKWEQSKALEQGAE 426

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I       R+ L+FS
Sbjct: 427 IIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICQHVRPDRQTLLFS 486

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D +R+     N  + D+     ++    +    +          
Sbjct: 487 ATFKRRIERLARDVLTDPIRIVQGELNEANQDVTQAVYVLPNPQQKWNWLLCHLVKFLAE 546

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A        L    F  + L G++ Q +R+  +   +     + IATDVA
Sbjct: 547 GSCLIFVTKKADAETVAHQLLVKEFNCLLLHGDMDQADRNKVIMQFKRKECDILIATDVA 606

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R  N
Sbjct: 607 ARGLDIPHIRNVVNYDIARDIDTHTHRIGRTGRAGEKGNAHTLVTEKDKEFAGHLVR--N 664

Query: 365 VSVVWEPAPS 374
           +    +P PS
Sbjct: 665 LEGADQPVPS 674


>gi|330820807|ref|YP_004349669.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
 gi|327372802|gb|AEA64157.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
          Length = 459

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/368 (31%), Positives = 189/368 (51%), Gaps = 1/368 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L E  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+      
Sbjct: 11  PLLRNLQELNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPAV 70

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +   A   L + PTRELA Q+ +          +      GGVS++ +   L+ G  ++V
Sbjct: 71  ASNRA-RVLVLVPTRELAEQLLQSFVDYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLV 129

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P++R+ L+FSAT 
Sbjct: 130 ATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPERRQTLLFSATF 189

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S  I  +A N  +  V +++++ N   S I    V V   ++    ++++  +  ++A+V
Sbjct: 190 SDEIRAMAANILRKPVDISVSAPNATASKIRQWVVTVDKRNKPELFMHLVARNKWEHALV 249

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  V     VL +  + V  + G+  Q  R  AL+  +    ++ +ATDVAARG+D
Sbjct: 250 FAKTRNGVDYLAAVLEQAGYAVDTIHGDKPQPARLRALERFKAREIQMLVATDVAARGLD 309

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++  
Sbjct: 310 IDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLRR 369

Query: 370 EPAPSVEA 377
           E  P  EA
Sbjct: 370 EEEPGFEA 377


>gi|325188273|emb|CCA22813.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 465

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +++
Sbjct: 91  IDTFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSI 150

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL +APTRELA Q+ + +  +     + V  C+GG +V  + 
Sbjct: 151 LQKININ------LKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDI 204

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G HIVVGTPGR+ D I    L    +K  VLDEADEML  GF+D I  +    P+
Sbjct: 205 HTLQQGVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPE 264

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   +  + + + +D +R+ +  +      I    V +     + + + +
Sbjct: 265 SVQVALFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCD 324

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV
Sbjct: 325 LYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRV 384

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LV++ +L  N EN +HR GR+GR GRKG+++  + +   R  +
Sbjct: 385 LITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLK 444

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  N  +   P    + I
Sbjct: 445 DIEKFYNTQIEEMPMNVADLI 465


>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           putida GB-1]
 gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 443

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L +  Y   T VQ   +   L  +D++ +AQTG+GKT  F L +   L  E ++
Sbjct: 10  EPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + ++ +VLDEAD MLDLGF ++++ +  + P+KR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    +++   ++LR       +
Sbjct: 189 FSDQIRVLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKEDLFCHLLRKQRWTQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L         + G+  Q  R  AL   +    +V +ATDVAARG+
Sbjct: 249 VFAKTRNGVDQLVQRLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG KG ++ ++  +  +    +      ++ 
Sbjct: 309 DIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVLTRQTLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHEEP 373


>gi|299117107|emb|CBN73878.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 467

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 185/371 (49%), Gaps = 8/371 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P+ +   + ++G+   T +Q       L  +D++  + TGSGKT+AF L    
Sbjct: 62  TFEEASMPEYVLREVLKQGFPKPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMI 121

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ+  E +     + +      GGV    +  D
Sbjct: 122 HINAQ-PYLEQGDGPIVLVVAPTRELAVQIKEECDKFGGSSDIKNTCVYGGVPKRSQVYD 180

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R
Sbjct: 181 LSRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRSIVSQIRPDR 240

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NI 238
           + LM+SAT    +  LA+++ ++  +V + S     +    + V +        ++  ++
Sbjct: 241 QTLMWSATWPKEVEGLARDFLRNYYQVTVGSLELSANKDIQQVVEIVEDFGKYRVLAKHL 300

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             ++ A   ++F  T+      T+ L    +  +A+ G+ +Q ER   L   ++GR+ + 
Sbjct: 301 QEHNNAGRVLIFVETKKGCDALTRSLRHEGWPALAIHGDKNQSERDRVLHDFKEGRSLIL 360

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           +ATDVAARG+D+ D+ +VI+ +     E+ +HR GR GRAG KG ++           R 
Sbjct: 361 VATDVAARGLDVKDIRMVINFDFPKEMESYVHRIGRCGRAGHKGTAISFFAGKNSKCARE 420

Query: 356 AERLFREANVS 366
             R+ ++AN  
Sbjct: 421 LIRILKQANQK 431


>gi|225718584|gb|ACO15138.1| Probable ATP-dependent RNA helicase DDX47 [Caligus clemensi]
          Length = 470

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 203/381 (53%), Gaps = 11/381 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   +V+ EA   +G+   + +Q+  +   L  +DV+  A+TGSGKT AF L +  
Sbjct: 31  SFSDLGLTEVLCEACESQGWKTPSKIQKEAIPVALTGRDVIGLAETGSGKTGAFALPVLQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R        AL + PTRELA Q+    E L    G+   V +GG+ +  +   
Sbjct: 91  ALLEKPQR------LFALILTPTRELAYQISETFEKLGKSIGIKCGVLVGGMDMMSQALV 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V TPGRL DH+      ++  LK +++DEAD +L++ F  +++ IL S P+ 
Sbjct: 145 LGKKPHIIVATPGRLIDHMENTKGFDLRSLKYLIMDEADRILNMDFEIEVDKILSSLPRG 204

Query: 180 --RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ ++FSAT++  +  L +   ++ VRV ++S+ +    +    + + L  ++  +V+
Sbjct: 205 EGRKNMLFSATMTKKVAKLQRASLQNPVRVEVSSKYQTVDKLLQYYLFIPLKYKEMYLVH 264

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+      + I+F ST +   +   +L    F  + L+G++SQ +R  +L   +     +
Sbjct: 265 IINELAGNSFIIFSSTCSGTLKLALLLRNLGFTAIPLNGQMSQNKRLASLNKFKTKSRSI 324

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +
Sbjct: 325 LIATDVASRGLDIPHVDIVINYDIPTHSKDYIHRVGRTARAGRSGRAITFVCQYDVELYQ 384

Query: 358 RLFREANVSVVWEPAPSVEAI 378
           R+       +    + + E +
Sbjct: 385 RIETLIGKKLPLYSSATEEEV 405


>gi|162459683|ref|NP_001105241.1| DEAD box RNA helicase1 [Zea mays]
 gi|39653663|gb|AAR29370.1| DEAD box RNA helicase [Zea mays]
          Length = 566

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 177/368 (48%), Gaps = 7/368 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+++  +  + G+V  T +Q       L+ +D++  AQTGSGKT+++ L     + A
Sbjct: 156 SQLPRLLHASYCQSGFVEPTPIQSQGWP-MLKGRDLIGIAQTGSGKTLSYLLPGLVHVGA 214

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  R      P+ L +APTRELAVQ+  E     + +        GG     + RDL+ G
Sbjct: 215 Q-PRLEQGDGPIVLILAPTRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRG 273

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ L 
Sbjct: 274 VEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLY 333

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYH 242
           +SAT    +  LA+ + ++  +V I S   + +    + V V                  
Sbjct: 334 WSATWPREVEALARQFLQNPYKVIIGSPELKANHSIQQIVEVISDHESIQDSVKLLSDLM 393

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+    + T+ L    +  +++ G+ +Q ER   L   + G++ +  ATD
Sbjct: 394 DGSRILIFLQTKKDCDKITRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATD 453

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQRRAERL 359
           VAARG+D+ D++ VI+ +  +  E+ +HR GRTGRAG  G +            R   ++
Sbjct: 454 VAARGLDVKDIKCVINYDFPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKI 513

Query: 360 FREANVSV 367
            REA   V
Sbjct: 514 LREAGQVV 521


>gi|259418826|ref|ZP_05742743.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
 gi|259345048|gb|EEW56902.1| putative ATP-dependent RNA helicase RhlE [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 9/385 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++P+ +   +   G+   T +Q   +   L  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTEFSTMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    + + A     L +APTRELA Q+   L  L   + +   + +GGVS++ + 
Sbjct: 61  VAQMLEYGQKPA-AGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K L++     +VLDEAD+MLDLGF   +  I    P+
Sbjct: 120 NRLSRGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ ++FSAT+   +  +A  Y K  VR+ +    +  + +      +A +++ + +  +
Sbjct: 180 KRQTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPATKVTQSVHFIAKAEKLSLLKEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  +  +VF  T+  + +  KVL +  F+  A+ G  SQ +R  AL+  + G   V 
Sbjct: 240 LAKHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + 
Sbjct: 300 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKA 359

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +   +++       WE  P   A
Sbjct: 360 IQKTMGITIPVASGRAWEELPDPAA 384


>gi|242005222|ref|XP_002423470.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506558|gb|EEB10732.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 422

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/428 (29%), Positives = 202/428 (47%), Gaps = 22/428 (5%)

Query: 1   MKI-FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK  FE  N+ + I       G    T +Q   +   L   D +  A+TGSGKT+AF L 
Sbjct: 1   MKERFEDLNLNKWIVRQCDSFGLTKPTPIQAHCIPKILEGNDCIGCAKTGSGKTLAFALP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L  E           AL + PTRELA Q+G +         + + V  GG+ +  +
Sbjct: 61  ILQKLSEEP------FGIFALVLTPTRELAFQIGEQFLAYGKVINLKLCVISGGMDMVTQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            ++L    HIVV TPGRL DH+      ++  ++ +VLDEAD +L   F D I  I  S 
Sbjct: 115 GQELSKRPHIVVSTPGRLADHLDSCNTFSLKKIRFLVLDEADRLLSGQFDDQISTIFKSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P K+++L+FSATI+  +    +   K+       S+     ++    VL     +D  +V
Sbjct: 175 PLKKQILLFSATINDTLKQAEELLSKNVFSFIDKSDVATVDNLQQFYVLCPDHVKDAYLV 234

Query: 237 N----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                  + +   N I+F  T  +    +  L E  F+ VA+   + Q+ER  AL   + 
Sbjct: 235 EVIQLYRKNNENGNIIIFTDTCRNCQLLSMTLNEVGFENVAIHSMMKQKERLAALSRFKS 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              +  IATD+A+RG+D+P +ELVI+  + + P++ +HR GRT RAGR GMSV ++    
Sbjct: 295 NIVKTLIATDIASRGLDIPTVELVINHSIPNVPKDYIHRVGRTARAGRAGMSVSLVTPVD 354

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKKMV 404
            +    +    N  +        E I+        +R+A+  L +  F +    +++K +
Sbjct: 355 IKLIHAIESIINTKLKEYSINDKEVIKILTQVKVTKREAEIKLDETDFYEKKMINKRKKL 414

Query: 405 DVLLAKHD 412
            +  A+ D
Sbjct: 415 MMEAAESD 422


>gi|120597338|ref|YP_961912.1| ATP-dependent RNA helicase RhlB [Shewanella sp. W3-18-1]
 gi|146294517|ref|YP_001184941.1| ATP-dependent RNA helicase RhlB [Shewanella putrefaciens CN-32]
 gi|189040045|sp|A4YB09|RHLB_SHEPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040084|sp|A1RFB3|RHLB_SHESW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|120557431|gb|ABM23358.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145566207|gb|ABP77142.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
 gi|319427882|gb|ADV55956.1| ATP-dependent RNA helicase, RhlB [Shewanella putrefaciens 200]
          Length = 439

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 203/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ 
Sbjct: 71  LLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L  G  I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAN 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  D V+V+IA + +   +I       +  D+   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+S+    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSISFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +    N S+ 
Sbjct: 371 IESYINHSIP 380


>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
 gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
          Length = 425

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 195/369 (52%), Gaps = 8/369 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   +V+   L  +G    T VQE  + P    +DV+  AQTG+GKT++F L L
Sbjct: 1   MMKFDALGVSEVLTALLQRQGITEPTPVQEQAIPPMRAGRDVIAQAQTGTGKTLSFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +           AL IAPTRELA+Q+ R  E L    G+   V  GG  + R++
Sbjct: 61  LEKIKPQGTVA------QALVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +V+GTPGRL DH+R   L +  +  +VLDEADEML +GF +D+E +L  + +
Sbjct: 115 EKLRRRPQLVIGTPGRLLDHVRRGTLALGSVNKIVLDEADEMLKMGFIEDVESLLGCAAQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L K +  +   + I  E    + I+  A+ V+  ++ + +   
Sbjct: 175 DYQLALFSATMPERIVRLTKKFMTNPAHIRIEGETTTLASIEQIALSVSEGEKIDRLCAS 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC+T+         LA   + V ALSG+L+Q +R+  L+  R+ + ++ 
Sbjct: 235 INEEAPYLAMVFCATKERTHTVMMELARRGYLVDALSGDLTQTQRAFVLRRFREAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++  +   +  +
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGAQGKAITLVAAHQHEKLRK 354

Query: 359 LFREANVSV 367
           +       +
Sbjct: 355 MEAALKERL 363


>gi|84995732|ref|XP_952588.1| eukaryotic translation initiation factor 4a [Theileria annulata
           strain Ankara]
 gi|65302749|emb|CAI74856.1| eukaryotic translation initiation factor 4a, putative [Theileria
           annulata]
          Length = 400

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 183/370 (49%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P +   D +  AQ+G+GKT  F +A    +  + 
Sbjct: 35  LNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQIINYD- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H
Sbjct: 94  -----VMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAGVH 148

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I  K L    +K  +LDEADEML  GF+  I+ +    P   ++ +FS
Sbjct: 149 MVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVALFS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L   + +   R+ +  +      I    +L+    +   + ++        
Sbjct: 209 ATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQ 268

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI++C+TR  V   T  + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ AR
Sbjct: 269 AIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLAR 328

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LVI+ +L  +P+N +HR GR+GR GRKG+++  +        + +    N  
Sbjct: 329 GIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMETMKSIENYYNTQ 388

Query: 367 VVWEPAPSVE 376
           +   PA   E
Sbjct: 389 IEEMPADIAE 398


>gi|145611832|ref|XP_001411591.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
 gi|152060562|sp|A4RGD1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|145019073|gb|EDK03352.1| hypothetical protein MGG_11672 [Magnaporthe oryzae 70-15]
          Length = 538

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/445 (29%), Positives = 220/445 (49%), Gaps = 20/445 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + EA     +   T +QE  +   L+ +DV+  A+TGSGKT AF L + 
Sbjct: 110 KSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPIL 169

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL   ++  P      L +APTRELA Q+G+  E L A   +  AV +GG+ +  +  
Sbjct: 170 QSLL---EKPQPLFG---LVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMVSQST 223

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH  + KG ++  LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 224 ALGKKPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILKFLPR 283

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++V+++S   +         + +    +D  ++ 
Sbjct: 284 ERRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKDVYLIY 343

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      K  IVF  T     R + +L    F  + L G+LSQ  R  AL   +     +
Sbjct: 344 LANEFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDI 403

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P+++LVI+ ++  +    +HR GRT RAGR G ++ +I Q       
Sbjct: 404 LVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWL 463

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+ + A   +     P  +  +E       +  +F + ++  ++   + + A H+     
Sbjct: 464 RIEKAA---LNGRKLPLFQPDKE-------EVMVFKERVEEAQRHAREEMKALHEDRGKK 513

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG 442
              L+  + G         +    G
Sbjct: 514 GAVLKGRKRGSATKRRHDDMDAEEG 538


>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
 gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
          Length = 471

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 7/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   +   +   GYV  T +Q   +   +  +DVL  AQTG+GKT AFGL +  
Sbjct: 3   FKQF-NLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ E            L +APTRELA Q+   L  +  +T +      GGV+++ + + 
Sbjct: 62  RLVQEE-----RGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  D+  IL + P KR
Sbjct: 117 LKEGAEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+   I  LA +           S     + + +    V    +   +  +L+
Sbjct: 177 QNLMFSATMPDDIRRLA-HEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++   PE   HR GRTGRA + G +  ++          + 
Sbjct: 296 TDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIE 355

Query: 361 REANVSVVWEPAPSVE 376
           +     +        +
Sbjct: 356 KVLGTKIERRRIEGFD 371


>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 399

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 188/381 (49%), Gaps = 12/381 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L 
Sbjct: 23  STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
             +              AL ++PTRELA Q+G+ ++ L     V   A+  G       +
Sbjct: 83  QAIDLRKKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
           +  ++G   V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    
Sbjct: 137 KMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
           PK  ++++ SAT++  I  + + +  D V++ +  +      I      +     + + +
Sbjct: 197 PKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTL 256

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I         ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +
Sbjct: 257 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    +
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 356 AERLFREANVSVVWEPAPSVE 376
              + +   + +   PA   E
Sbjct: 377 LREIEKFYCIKINPMPANFAE 397


>gi|153871201|ref|ZP_02000433.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
 gi|152072333|gb|EDN69567.1| ATP-dependent RNA helicase DbpA [Beggiatoa sp. PS]
          Length = 466

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 138/401 (34%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I Q +   L   GY N+T +Q   L   L+ +DV+  A+TGSGKT AFG+ L S L A+
Sbjct: 14  EIKQAMLANLESIGYSNMTPIQAESLPSILKNQDVIAQAKTGSGKTAAFGIGLLSKLNAK 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNG 124
           N          AL + PTRELA QVG+E+  L   T  V  + + G      +RD   +G
Sbjct: 74  N------YQVQALVLCPTRELAEQVGQEIRRLARFTQNVKLLSLCGGKPIAPQRDSLAHG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+R   LN+ +   +VLDEAD MLD+GF DD+  I+   PKKR+ L+
Sbjct: 128 AHIIVGTPGRIQDHLRKGSLNLKNAHTLVLDEADRMLDMGFYDDMMDIISYLPKKRQTLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  ++   QK  V + + S +           +     R  A++ +L ++  
Sbjct: 188 FSATFPDSIVQMSHAIQKQPVNIQVESLHSYSEIEQRFYQVKQPQHRKEAVMTLLAHYQP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L ++ +  +A+ G+L Q+ER   L    +    + +ATDVA
Sbjct: 248 ESTVIFCNTKLQCQEIATQLKKNGYYAIAIHGDLEQKERDQVLLRFANKSCSILVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL++VI+ EL  + +  +HR GRTGRAG+KG+++ +   + Q + E +    N
Sbjct: 308 ARGLDINDLQVVINYELPGSQDIHIHRIGRTGRAGKKGLALSLYTASEQHKIEAIAEIQN 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                +   S+E     D   +   P+    I G +K  + 
Sbjct: 368 QPCRCDALESLE-----DKGTLRPPPMITICIHGGKKNKMR 403



 Score = 56.9 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADG 517
                    +  G K K     ++  L    G+    +G I +    ++V     ++ + 
Sbjct: 385 RPPPMITICIHGGKKNKMRPGDILGALTGEIGMTSTQVGKINIFDFYSYVALDRTIANNV 444

Query: 518 VDLLRRTVKLDKGIQLKYLG 537
           +  L+ +    +  ++  LG
Sbjct: 445 LKHLQNSKIKGRQFKVSKLG 464


>gi|74693276|sp|Q755W0|FAL1_ASHGO RecName: Full=ATP-dependent RNA helicase FAL1
          Length = 398

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 179/375 (47%), Gaps = 11/375 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + +   +   G+   +++Q   +   +R KDV+  AQ+G+GKT  F + +  
Sbjct: 24  TFESMKLQENLLRGIYGYGFEAPSAIQSRAITQIIRGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       S +    AL ++PTRELA Q+ + +  L     VV   C GG ++ ++   
Sbjct: 84  VID------SSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISK 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G H++ GTPGR+ D I+ + +N  H+K +VLDEADE+L        +     +    
Sbjct: 138 VNKGCHVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPS 197

Query: 181 RMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +   + + +        K        +    E        Y   +     + + + +
Sbjct: 198 SVQVVVVSATMSKVVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCD 257

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         ++FC+T+  V   +  L ++ F V ++ G++ Q +R   +   R G +RV
Sbjct: 258 LYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRV 317

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    + +
Sbjct: 318 LISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFITREEVTKLK 377

Query: 358 RLFREANVSVVWEPA 372
            + +  ++ +   PA
Sbjct: 378 SIEKHYSIKIKPMPA 392


>gi|326791684|ref|YP_004309505.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
 gi|326542448|gb|ADZ84307.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
           5427]
          Length = 371

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 185/385 (48%), Gaps = 21/385 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   L + G    T +Q+  +   L  KDV+  AQTG+GKT+AF L L   L +++
Sbjct: 8   ISPEMINHLKKSGITIPTPIQDQTIPLILSGKDVIGEAQTGTGKTLAFLLPLFEKLSSKS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA+Q+ +E + L     + +    GG     + + L    H
Sbjct: 68  PNI------QALVLSPTRELAIQITQEAKKLAEAKAIGILPIYGGQDTAMQLKKLGKPVH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DHI  K +++S     VLDEAD+ML +GF++D+E I    PKKR+ L FS
Sbjct: 122 LVIATPGRLLDHIGRKSIDLSKTTTFVLDEADQMLLMGFKNDVESITKQLPKKRQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y      V IA +      I    V      +  A++ +L       
Sbjct: 182 ATMDAPVKKLAYRYTSSPTTVTIAKKKITIEAIHQEIVETTDRHKQAALLQVLSEDNPYM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + + +  +  V L  ++ Q +R   ++  + G  +  IATDVAAR
Sbjct: 242 AIIFCRTKRRVEVLYEAMKDKDYNCVRLHSDILQSKRERIMKSFKKGDIQYLIATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++   PE  +HR GRTGRAG  G +   +    ++    +       
Sbjct: 302 GLDISGVTHIYNYDVPETPEAYIHRIGRTGRAGNDGYTCMFMSPKNEKEVSEIEAHIRFK 361

Query: 367 VVWEPAPSVEAIRERDAQRILQDPL 391
           +                +RILQD L
Sbjct: 362 IP---------------RRILQDIL 371


>gi|157826077|ref|YP_001493797.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
 gi|157800035|gb|ABV75289.1| ATP-dependent RNA helicase RhlE [Rickettsia akari str. Hartford]
          Length = 410

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  +H++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKMNSAVLIGGEPMHKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+     ++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKAIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +  +    
Sbjct: 172 QVLMFSATMPKHIIVVSQKYLNNPVRITVGAANKAAAEIKQESIHVSDKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDIIRWRAID 350

Query: 361 REAN 364
           R  N
Sbjct: 351 RLVN 354


>gi|319405816|emb|CBI79446.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 465

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N+   + +  A+   GY   T +Q   +   L+++D+L  AQTG+GKT +F L +
Sbjct: 5   LDSFDNLGLSKKVINAIKSAGYTIPTPIQSGTIPHILQKRDILGIAQTGTGKTASFVLPM 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R   A  P  L + PTRELA QV    +       + VA+ IGGVS  ++ 
Sbjct: 65  LTLLEKGRAR---ARIPRTLILEPTRELATQVQENFDKYGVNHNLNVALLIGGVSFEQQD 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ GA +++ TPGRL DH     L +  ++ +V+DEAD MLD+GF  +IE I   +P 
Sbjct: 122 RKLERGADVLIATPGRLLDHFEHGKLLLLGIEILVIDEADRMLDMGFIPNIERICKLTPF 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++P IT L K +    V + I   +     I  R V       D   +  
Sbjct: 182 TRQTLFFSATMAPEITKLTKQFLHSPVYIEITKASSTAKKITQRLVKSGSKPWDKRAILR 241

Query: 239 LRYHGA----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              H      KNAI+FC+ +  +S   + L +H F V  L G++ Q  R++ L   +D +
Sbjct: 242 ELIHKEGDELKNAIIFCNRKKDISELVRSLIKHNFSVGTLHGDMDQHSRTSTLANFKDNK 301

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +A+DVA+RG+D+P +  V + ++ ++ E+ +HR GRTGRA R G +  ++ +  ++
Sbjct: 302 LTLLVASDVASRGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRAKRSGKAFTIVTKADEK 361

Query: 355 RAERLFREANVSVVW 369
               +   +   + W
Sbjct: 362 YISAIEEISQEKIEW 376


>gi|315125230|ref|YP_004067233.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
 gi|315013743|gb|ADT67081.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas sp. SM9913]
          Length = 420

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 183/372 (49%), Gaps = 8/372 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A 
Sbjct: 4   KKFSDFAIAPEVVA-GLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTAT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R
Sbjct: 63  CHRLLQSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 121 AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFRRMPD 180

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               L   FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++
Sbjct: 181 TSERLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLL 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AIVF +T+ S       L     +V  L+G+++Q++R + L     G   
Sbjct: 241 TLIEEEWPEKAIVFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAQFSKGELD 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+ +P++  V + +L  + E+ +HR GRT RAG  G ++    +      
Sbjct: 301 FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNL 360

Query: 357 ERLFREANVSVV 368
             +      S+ 
Sbjct: 361 HEIEEYIEHSIP 372


>gi|294885690|ref|XP_002771414.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874995|gb|EER03230.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 453

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 166/374 (44%), Gaps = 10/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   
Sbjct: 79  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEK 138

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + PTRELA+Q     + L       V V  GG S+  +   L
Sbjct: 139 VNTDIT-----DGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRL 193

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HI+VGTPGR+ D       +        V+DEAD++L   F+  +E ++   PK++
Sbjct: 194 YNTVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEK 253

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++  +   P      KN            E      +      V    + + +  +  
Sbjct: 254 RQILMFSATFPVTILDFKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 313

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F    +   + Q  R+      R+G  R  ++
Sbjct: 314 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 373

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+ ++ +VI+ +   N E  LHR GR+GR G  G+++ ++  + +    R+ 
Sbjct: 374 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 433

Query: 361 REANVSVVWEPAPS 374
            E    +  +P PS
Sbjct: 434 HELGTEI--KPIPS 445


>gi|294880791|ref|XP_002769153.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239872304|gb|EER01871.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 449

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 166/374 (44%), Gaps = 10/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   
Sbjct: 75  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEK 134

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + PTRELA+Q     + L       V V  GG S+  +   L
Sbjct: 135 VNTDIT-----DGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRL 189

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HI+VGTPGR+ D       +        V+DEAD++L   F+  +E ++   PK++
Sbjct: 190 YNTVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEK 249

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++  +   P      KN            E      +      V    + + +  +  
Sbjct: 250 RQILMFSATFPVTILDFKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 309

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F    +   + Q  R+      R+G  R  ++
Sbjct: 310 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 369

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+ ++ +VI+ +   N E  LHR GR+GR G  G+++ ++  + +    R+ 
Sbjct: 370 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 429

Query: 361 REANVSVVWEPAPS 374
            E    +  +P PS
Sbjct: 430 HELGTEI--KPIPS 441


>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase domain-containing protein [Desulfohalobium
           retbaense DSM 5692]
 gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 403

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 180/371 (48%), Gaps = 6/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   ++  G+   T +Q   L   L  KDVL  AQTG+GKT AF L +   L++ 
Sbjct: 7   SLHEKITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPILQRLMS- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL ++PTRELA Q  +    L   TG+  A   GGV    +   +++GA
Sbjct: 66  ----GPRRRVRALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKIRSGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL DH+  +  N+  ++ +VLDEAD M D+GF  DI  IL   P +R+ ++F
Sbjct: 122 EIIVACPGRLLDHLTDRSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQNMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L +    D   V      +  ++I      V    +   ++ IL      
Sbjct: 182 SATMPADIRALTEKLLVDPAEV-RIDHEKPSANISQALYPVEAQHKTPMLLKILEDEPDA 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    +  + L    ++   L G LSQ +R  A+   R GR  + +ATD+AA
Sbjct: 241 LTLVFTKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTILVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++    EN  HR GRTGR  R G+++ +I +        + R    
Sbjct: 301 RGIDVERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLIARGDMHLVRAIERNLGK 360

Query: 366 SVVWEPAPSVE 376
            +  +    +E
Sbjct: 361 RLERKTIDQME 371


>gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
 gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
          Length = 432

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/397 (29%), Positives = 198/397 (49%), Gaps = 16/397 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P    + EAL +  +   T +Q   L   L   DV+  AQTG+GKT AF L+L   
Sbjct: 11  FTDFPIHSALLEALEDIHFTKTTPIQAQTLPLTLAGYDVMGIAQTGTGKTAAFLLSLMHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+  N     A  P A+ +APTRELA+Q+ +E++ L A TG+V     GG S+  +++  
Sbjct: 71  LMT-NPVHPKAKGPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLF 129

Query: 122 Q-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           Q     +++GTPGR+ D  + K   + +++  VLDEAD M DLGF DD+ ++L   P   
Sbjct: 130 QACNVDVIIGTPGRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAY 189

Query: 181 RMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             L   FSAT+   +  LA  +      V I S+    ++I +     A  ++   ++ +
Sbjct: 190 ERLNLLFSATMPQKVQELAYEHFNAPKVVAIESQQTTANNITHYLYHTAKHEKTPLLLGL 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 + +++F +T+  + R + VL  + +   ALSG+++Q++R   ++  ++G   + 
Sbjct: 250 FARERPERSMIFLNTKHDLERLSLVLTANGYHNAALSGDVAQKKREQIIRDFQEGTVNIV 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGI +  +  V + +L    E+ +HR GRT RAG  G ++    +        
Sbjct: 310 VATDVAARGIHIDGITHVFNYDLPQIAEDYVHRIGRTARAGASGTAISFACEEYVYSLPE 369

Query: 359 LFREANVSVVWEPA----------PSVEAIRERDAQR 385
           +       +  +P           PS EA+     ++
Sbjct: 370 IEHFLGEKIPVKPIEESLIVDVIPPSDEALDALRNEK 406


>gi|45219880|gb|AAH66938.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sapiens]
          Length = 648

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|257091933|ref|YP_003165574.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044457|gb|ACV33645.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 474

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 201/386 (52%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           +   I +AL++ GY   T VQ+  + P +  +D++VS+QTGSGKT AF L       L E
Sbjct: 8   LHPAILKALTDSGYSEPTPVQQQAIPPAIEGRDLMVSSQTGSGKTAAFMLPALHRFALQE 67

Query: 66  NDRFSPASA-------------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
                P  +                   P  L + PTRELA+QV    E    +   V A
Sbjct: 68  RPAAVPRPSERGAARPRGHDRQRFQAAQPRMLVLTPTRELALQVTAATEKYGRQLHHVRA 127

Query: 107 V-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           V  +GG+   ++   L     I+V TPGRL DH+    ++ S L+ +VLDEAD MLD+GF
Sbjct: 128 VAILGGMPYPKQMELLGRNPEILVATPGRLIDHMSSGKIDFSQLQILVLDEADRMLDMGF 187

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+ ++P  R+ L+FSAT+   +  LA+   + A+R+ + + + +H +I+ R   
Sbjct: 188 IEDIERIVAATPGSRQTLLFSATLDGTVGELAQRMTRAALRIQVDATSARHDNIEQRMHF 247

Query: 226 VAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V   + ++  + ++LR      A+VF +T+      +  L        AL G++ Q  R+
Sbjct: 248 VDDLAHKNRLLDHLLRDATIDQALVFTATKRDADTVSDRLNVAGLNAAALHGDMHQGARN 307

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L  MR G+ R+ +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 308 RTLAAMRRGQVRILVATDVAARGIDVPTITHVFNYDLPKFAEDYVHRIGRTGRAGRNGLA 367

Query: 345 VFVIPQNMQRRAERLFREANVSVVWE 370
           + ++         ++ R     +  E
Sbjct: 368 ISLVHHAEHFNVRKIERFTKQPIPVE 393


>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 402

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 203/396 (51%), Gaps = 12/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 3   LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  S      AL I PTRELA QV  E+  L    + + VA+ IGG  + R+   LQ   
Sbjct: 63  NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIVIGTPGRIIDHIERKTLINRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     R+++  E      I    V  + S++   +V  L      
Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEATTSVKIKQEIVYASESEKYEKLVTQLCQREGS 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 237 III-FVKTKRGADQLANRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++  +    +RR   L  +   
Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPALADKEG- 354

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
                        ++R+++++ + P  L +  G +K
Sbjct: 355 ---ELNFDCSVQFKKRNSKKVFKRPSTLKTKYGRKK 387


>gi|89074347|ref|ZP_01160829.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89049834|gb|EAR55375.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 455

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 187/367 (50%), Gaps = 5/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E GY + T +QE  +   L  K+++ +AQTG+GKT  F L +   L  ++
Sbjct: 8   LNDSIVKAVTEMGYTSPTPIQEKAIPVALTGKNLMAAAQTGTGKTAGFVLPILQML--DD 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL +APTRELAVQV   ++       +      GGV    ++R L  G  
Sbjct: 66  GTKVRAKRIRALILAPTRELAVQVEDNIKQYSKHLNLASMAMYGGVDYEPQKRRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I++  P  R+ ++FS
Sbjct: 126 ILVATPGRLLDMYTKRAIHFDAIETLVLDEADRMLDMGFIEDINKIVERLPVDRQNMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ + +++A +      ID   V V    +   + ++++      
Sbjct: 186 ATLSDQVRFLAKTAVRNPIEISVAKDASADPKIDQWLVTVDKDMKSALLSSLIQEQKWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      +     SQ  RS  L+  ++G+ +  IAT VA+R
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGISAESFHSGRSQAVRSQLLEDFKNGKLQYLIATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFREA 363
           GID+  L  V++ +L   PE  +HR GRTGRAG  G ++  + ++  +     E L    
Sbjct: 306 GIDIEQLTRVVNYDLPFPPEEYVHRIGRTGRAGASGEAISFVSRDNFKNLCMIESLLGHL 365

Query: 364 NVSVVWE 370
                 E
Sbjct: 366 ITRKEIE 372


>gi|157962744|ref|YP_001502778.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847744|gb|ABV88243.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 468

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/423 (27%), Positives = 199/423 (47%), Gaps = 3/423 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++E+GY + T +Q   +   L +++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSTPIVKAVTEQGYTSPTPIQAKTIPVILSQRNLIAAAQTGTGKTASFVLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELAVQV   +        +      GGV    +R  L  G  
Sbjct: 66  SETQRKKRIRALILTPTRELAVQVEDNISQYGKHLDLTSMAMYGGVDSKPQRERLIQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L+ +VLDEAD MLD+GF +DI  I++  P  R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDELEFLVLDEADRMLDMGFIEDINKIIEKLPVDRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA+      + +++         I+   V V    +   + ++++ +  + 
Sbjct: 186 ATLSRQVKELARATITRPIEISVTHNTDNKPKIEQWLVTVDKDKKSALLSHLIQENNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +       + G  SQ+ R   L   + G+  + IAT +AAR
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGITAECIHGGRSQEIREQILADFKSGKIGLLIATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L LVI+ +L    +  +HR GRTGRAG  G +V ++ ++  +    +       
Sbjct: 306 GLDIDELPLVINYDLPYPADEYIHRIGRTGRAGANGEAVALVSKDDFKNLCMIETRLGHL 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +         A R+     IL        I G + K         D  + +A   ++H A
Sbjct: 366 IERREIEGF-APRKEVPISILNFKPKSKQITGADSKPTSDKKPARDTRRTSAHETKVHGA 424

Query: 427 GLC 429
            + 
Sbjct: 425 KVH 427


>gi|187957004|gb|AAI58084.1| EG434080 protein [Mus musculus]
          Length = 411

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLPTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +    +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNLADLI 411


>gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
          Length = 439

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/399 (27%), Positives = 186/399 (46%), Gaps = 18/399 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   + +AL ++ Y   T++Q   +   + E+DVL SA TG+GKT AF L     
Sbjct: 6   FEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++
Sbjct: 124 NTNQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +   A+            S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFAARLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R      ++ L +   +   L GE++Q +R+NA+  ++ G   V +
Sbjct: 244 ETEEVTRGIVFVRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FRE----ANVSVVWEPAP--------SVEAIRERDAQRI 386
            R         ++    P         V+++ ++   RI
Sbjct: 364 KRYTEEILKARILEGLEPRTKPPKDGEVKSVSKKQKARI 402


>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74683279|sp|Q5KBE2|RRP3_CRYNE RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 484

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 196/370 (52%), Gaps = 9/370 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +  A +  G+   + +Q   +   L  KD++  AQTGSGKT AF L + 
Sbjct: 38  KTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL      F       AL +APTRELA Q+ +++  L +  GV  AV +GG+ +  +  
Sbjct: 98  QTLWENPQPF------FALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSI 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   I+ IL   PK
Sbjct: 152 ALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPK 211

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   +FSAT++  +  L +      VRV ++S+    S +    +L+ L ++D  ++ +
Sbjct: 212 ERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                + + ++F  T A   R + +L    F  + L G+++Q  R  +L   + G   + 
Sbjct: 272 ANELSSSSMMIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSIL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q      +R
Sbjct: 332 VATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQR 391

Query: 359 LFREANVSVV 368
           +       + 
Sbjct: 392 IESHIGKKMT 401


>gi|225450277|ref|XP_002267581.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 663

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 184/370 (49%), Gaps = 13/370 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           ++   +   +    YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++  
Sbjct: 223 DLGDALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMKG 282

Query: 65  ---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +  R S  + PLAL ++PTREL+ Q+  E +    +TGV V V  GG  ++++ RDL
Sbjct: 283 QYAQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDL 342

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++      R
Sbjct: 343 ERGVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPR 402

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +  +   S       +    D +   I     +     +   L+      +A      +
Sbjct: 403 GVRQTMLFSATFPKEIQRLASDFLANYIFLAVGRSDKRSHLMDLL------HAQRENGTH 456

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+         L  + F   ++ G+ SQQER +AL++ + G   + +AT
Sbjct: 457 GKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVAT 516

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAER 358
           DVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +N   + R    
Sbjct: 517 DVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARGLAE 576

Query: 359 LFREANVSVV 368
           L +E+N  V 
Sbjct: 577 LMQESNQEVP 586


>gi|163843319|ref|YP_001627723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis
           ATCC 23445]
 gi|163674042|gb|ABY38153.1| DEAD/DEAH box helicase domain protein [Brucella suis ATCC 23445]
          Length = 535

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQMQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|189425674|ref|YP_001952851.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
 gi|189421933|gb|ACD96331.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 439

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 185/371 (49%), Gaps = 6/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    +   ++  GY   T +Q   +   +   D++  AQTG+GKT AF L +   L+  
Sbjct: 7   SFHPKVVAGINALGYTTPTPIQAQAIPKIMAGHDLMGLAQTGTGKTAAFALPILHRLMQ- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     AL IAPTRELA Q+   +  L  +T +      GGV+V+ +   L+NG 
Sbjct: 66  ----GPRKQVRALVIAPTRELAEQINDAMLELGQQTRLKSITVYGGVNVNPQIEKLKNGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL DHI    +++++L+ +VLDEAD+M D+GF  DI  IL   P +R+ ++F
Sbjct: 122 EIVVACPGRLLDHINQGTIDLTNLELLVLDEADQMFDMGFLPDIRRILKHLPAQRQTMLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+   +D   V         + + +    VA   +   ++ +L++    
Sbjct: 182 SATMPAEIRGLAREILRDPATV-QVDNVAPAATVSHALYPVAQHLKTPLLMQLLKHTDTD 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+    R  + L +  +   +L G LSQ  R  A+   R+G  ++ +ATD+AA
Sbjct: 241 SVLIFTRTKHRAKRVGEQLEKAGYTAASLQGNLSQNRRQAAMDGFRNGTYQILVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++    E  +HR GRTGRA R G +  ++        + + R    
Sbjct: 301 RGIDVSQVSHVINYDIPDTSEAYIHRIGRTGRAARNGDAFTMVTDEDTLMVKAIERTLGA 360

Query: 366 SVVWEPAPSVE 376
           ++        +
Sbjct: 361 AIERRTVEGFD 371


>gi|240279271|gb|EER42776.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H143]
 gi|325089541|gb|EGC42851.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H88]
          Length = 514

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 48  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 108 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 162 NEAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 222 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 280

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 281 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 340

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 400

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 401 ELGTEIQPIP 410


>gi|225559536|gb|EEH07818.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus G186AR]
          Length = 511

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 48  FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +N +        AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 108 TNPKNSK------TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 162 NEAVHIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + +    + ++   +N+  E             V    + + +  +   
Sbjct: 222 VMLFSATFPLIVKSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 280

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 281 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCS 340

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQ 400

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 401 ELGTEIQPIP 410


>gi|242034037|ref|XP_002464413.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
 gi|241918267|gb|EER91411.1| hypothetical protein SORBIDRAFT_01g017770 [Sorghum bicolor]
          Length = 507

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 170/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 135 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 195 IDPEK------TAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 248

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 249 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSVEALIHFLPPSRQ 308

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 309 LLMFSATFPVTVKEFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSK 367

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 368 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 427

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 428 DLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQ 487

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 488 ELGTEIKTIP-PQID 501


>gi|222352149|ref|NP_061135.2| probable ATP-dependent RNA helicase DDX43 [Homo sapiens]
 gi|145559466|sp|Q9NXZ2|DDX43_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX43; AltName:
           Full=Cancer/testis antigen 13; Short=CT13; AltName:
           Full=DEAD box protein 43; AltName: Full=DEAD box protein
           HAGE; AltName: Full=Helical antigen
          Length = 648

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|127512812|ref|YP_001094009.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638107|gb|ABO23750.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 488

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 216/468 (46%), Gaps = 28/468 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+  P  +   L + GY   T +Q+  +   L+ K+++ +AQTGSGKT  F L + +
Sbjct: 2   TFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL+    +    +   A+ +APTREL +QV   +       G+V     GGV V  +++ 
Sbjct: 62  TLMQGQTQRKKRA--RAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQ 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV TPGRL D    + +    ++ +VLDEAD MLD+GF +DI  ILD+ P++R
Sbjct: 120 LIEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+S  +  LAK     A+ +++        DI+     V    +   +  +++
Sbjct: 180 QNLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +    A++F  T+   ++    L +   Q   +    +Q  R   L   + G+    I+
Sbjct: 240 DNAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLIS 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T ++ARGID+ +L LVI+ +L    +  +HR GRTGRAG KG ++ ++ ++  +    + 
Sbjct: 300 TGISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
              +  +            E  A R       L+ +   +++              AA  
Sbjct: 360 SRLDHLLERREI-------EGFAPRKPVPISILNYVPKAKREQAQGEKGSE-----AAA- 406

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                 G+ AP+E       +   R  D  R      G    +KGSS 
Sbjct: 407 ----SQGVKAPKE-------AKDKRREDKPRGQSKSQGKATPYKGSST 443


>gi|15892943|ref|NP_360657.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
 gi|15620136|gb|AAL03558.1| ATP-dependent RNA helicase RhlE [Rickettsia conorii str. Malish 7]
          Length = 414

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/409 (30%), Positives = 209/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 5   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 64  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPKQFIQ 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 116 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 176 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 235 GNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 295 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D    ++     K+  D
Sbjct: 355 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGKKFNAFDSSRKRTFD 402


>gi|197123442|ref|YP_002135393.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. K]
 gi|196173291|gb|ACG74264.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp. K]
          Length = 478

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 193/385 (50%), Gaps = 7/385 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 13  NLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIERLAGG 72

Query: 66  NDRFSPA-----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  PA       P AL +APTRELAVQ+  ELE       V  A+ IGGV +  +   
Sbjct: 73  APKDRPAAAHGKPGPRALVLAPTRELAVQIAGELERFGRGRHVRGALVIGGVGMGAQSAA 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   PK R
Sbjct: 133 LRDH-EVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++  L 
Sbjct: 192 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREKLPLLLA-LL 250

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ RV +A
Sbjct: 251 EEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 310

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G +              + 
Sbjct: 311 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRDIE 370

Query: 361 REANVSVVWEPAPSVEAIRERDAQR 385
           R     +     P   A  + + QR
Sbjct: 371 RLTRAPIPRAEVPREHATFQAELQR 395


>gi|42522912|ref|NP_968292.1| ATP-dependent RNA helicase DbpA [Bdellovibrio bacteriovorus HD100]
 gi|39574108|emb|CAE79285.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 505

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 218/406 (53%), Gaps = 15/406 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   + E G+  LT +Q+  +   L  KD++  A+TGSGKT AF L + + 
Sbjct: 49  FSTLPLSPELLTVVQELGFETLTPIQQESIPLLLAGKDIIGQAKTGSGKTAAFSLPILNK 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +           AL + PTRELA QV  E+  L  +   +  + + G    RE+ D 
Sbjct: 109 INLDQP------LLQALILCPTRELASQVVTEIRKLGRRLPGLKVLAMTGGQSGREQADA 162

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +NG  IVVGTPGRL D +    +++S +K VVLDEAD+MLD+GF D+I+ ++   P  R
Sbjct: 163 LENGVQIVVGTPGRLADFVGRNRIDLSAVKTVVLDEADKMLDMGFADEIKTVMRDLPGSR 222

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT   +I  L++ YQ+ A +V I  E +     +        +D+ N ++ IL+
Sbjct: 223 QTVLFSATFPESIEHLSRKYQRHAQQVIIEDEEQNLI--EQLVYDSEDNDKTNVLMRILQ 280

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H + + I+FC+T+ +V+   + L +       L G++ Q+ER   + M R+G  R+ +A
Sbjct: 281 QHPSDSTIIFCNTKNAVAEIAERLNDLGAASGCLHGDMEQRERDRVMAMFRNGSHRILVA 340

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +LELVI+ +L  +PE  +HR GRTGRAG+ G++V +       +  +  
Sbjct: 341 TDVAARGLDIDNLELVINFDLPLSPEIYVHRIGRTGRAGKTGVAVTIAHPKDTLKLGQFE 400

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVD 405
                       PS+    +    + L++ P+   SI G  K  + 
Sbjct: 401 ELTGGKFAR---PSLGFKNQYGLNKTLKEAPMKTISISGGRKDKLR 443



 Score = 65.8 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRS-SGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                   S+S G K K     ++  L  +  G+    +G I +Q  ++FV VSA   D 
Sbjct: 425 KEAPMKTISISGGRKDKLRPGDILGALTGAAGGLTSADVGKIEIQDKISFVAVSAKVADG 484

Query: 521 LRRTVKLDKGIQLKY 535
             + ++  +    K+
Sbjct: 485 AMQKLRDGRIKGQKF 499


>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 422

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/374 (32%), Positives = 205/374 (54%), Gaps = 7/374 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L++  +   T +Q   + P L  KD++ +AQTG+GKT+AF L  
Sbjct: 1   MTNFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E  +        AL + PTRELA+Q+   L  +   TG+  AV +GG++   + 
Sbjct: 61  IQLLSTEPRQP----GVRALILTPTRELALQINEALLQIARGTGIRAAVAVGGLNERSQL 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD++ GA+IVV TPGRL D +    +N++ ++ ++LDE+D MLD+GF   I+ I+ + P 
Sbjct: 117 RDIRGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRMLDMGFLPTIKRIIAAMPA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+  ++  L + + ++AVR+ + S ++    +D     V    +   +  +
Sbjct: 177 ERQTLLFSATLESSVKQLVETHVRNAVRIELGSISKPSEQVDLHLYEVDQDRKFGLLEMM 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       +VF  T+    +  K LA+  F+  A+ G+ SQ +R  AL+  ++G  RV 
Sbjct: 237 LREEQGSF-LVFARTKHGADKLAKKLAQSGFKSAAIHGDRSQNQRIQALKGFQEGYYRVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGI +  +  V++ +L   PE+ +HR GRTGRAG KG +     ++ +    R
Sbjct: 296 VATDVAARGIHVEGISHVVNFDLPQVPEDFIHRVGRTGRAGAKGTASTFATRSERSEIGR 355

Query: 359 LFREANVSVVWEPA 372
           + R  +V +     
Sbjct: 356 IERTLSVKLKRREV 369


>gi|195356214|ref|XP_002044575.1| GM20179 [Drosophila sechellia]
 gi|194132206|gb|EDW53828.1| GM20179 [Drosophila sechellia]
          Length = 1214

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 513 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 571

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 572 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 631

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 632 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 691

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 692 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSI 751

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 752 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 811

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 812 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 871

Query: 368 VWEPA 372
              PA
Sbjct: 872 TLIPA 876


>gi|156367199|ref|XP_001627306.1| predicted protein [Nematostella vectensis]
 gi|156214212|gb|EDO35206.1| predicted protein [Nematostella vectensis]
          Length = 669

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/386 (29%), Positives = 197/386 (51%), Gaps = 18/386 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +++FE++   +++   +   GY   T VQ+  +     ++D++  AQTGSGKT AF + +
Sbjct: 191 IELFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 250

Query: 59  ASTLLAENDRFSP--------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            S +  E     P           P+ L +APTRELAVQ+  E      ++     V  G
Sbjct: 251 LSRIYMEGPPAPPDIKHAGRRRQYPICLVLAPTRELAVQIFDEARKFSYRSLCRPCVVYG 310

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R+L    H++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I 
Sbjct: 311 GADIGSQLRELDRNCHLLVATPGRLVDMMDRGRVGLDSIRFLVLDEADRMLDMGFEPQIR 370

Query: 171 FILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I+D         R+ LMFSAT    I  LA+++ ++ + + +        +I  + V V
Sbjct: 371 RIVDQDSMPKTGIRQTLMFSATFPKEIQMLARDFLENYIFLAVGKVGSTSENITQKVVWV 430

Query: 227 ALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              D+ + ++++L   G +   +VF  T+         LA+  +   ++ G+ SQ+ER  
Sbjct: 431 DEFDKRSFLLDLLNASGPQQLTLVFVETKKGADALEMFLAKDGYYCTSIHGDRSQREREE 490

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  R G   + +AT VAARG+D+P+++ VI+ +L ++ E  +HR GRTGR G  G++ 
Sbjct: 491 ALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYVHRIGRTGRVGHTGLAT 550

Query: 346 FVI---PQNMQRRAERLFREANVSVV 368
                  +N+ +    +  E+   + 
Sbjct: 551 SFFNHKNKNVAKELMDILEESKQEIP 576


>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
 gi|74634065|sp|Q6C7D2|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica]
          Length = 605

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/417 (29%), Positives = 209/417 (50%), Gaps = 10/417 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  IP  +   ++L + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 131 KPFSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 190

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F P +    + ++PTRELA+Q+      L A     + + IGG +  +E  
Sbjct: 191 EML--RKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIVIGGNNRRQEEE 248

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH    +G    +LKA+++DEAD +L++GF  +++ I+   PK
Sbjct: 249 KLNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPK 308

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+   K         E+   S     +   V+     R   +
Sbjct: 309 ERQSMLFSATQTTKVEDLARISLKKGPLYLNVDEHNVSSTAEGLEQGYVVCDSDKRFLLL 368

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + + 
Sbjct: 369 FSFLKRNAGKKIIVFLSSCNSVKFYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFINAKQ 428

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V I TDVAARG+D+P ++ +I  +   +P + +HR GRT R    G S+  +  +    
Sbjct: 429 GVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARGSASGKSIMFLTPSELGF 488

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R  + A V +     P+ + A  +   ++++    +L++   D  +      A H
Sbjct: 489 L-RYLKAAKVPLNEYEFPNKKIANVQSQLEKLISSNYWLNTSAKDGYRAYLQAYASH 544


>gi|116195380|ref|XP_001223502.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
 gi|118595827|sp|Q2H1Q8|RRP3_CHAGB RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|88180201|gb|EAQ87669.1| hypothetical protein CHGG_04288 [Chaetomium globosum CBS 148.51]
          Length = 493

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/399 (30%), Positives = 205/399 (51%), Gaps = 14/399 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A  E G+   T +Q+  +   L+++D++  A+TGSGKT AF L + 
Sbjct: 65  KTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPIL 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +           AL +APTRELA Q+ +  E L +   +  A+ +GG+ + ++  
Sbjct: 125 QALLDKPQP------LFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAI 178

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH  + KG ++ +L+ +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 179 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPR 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++V+I+S   Q         V +  + +D  ++ 
Sbjct: 239 ERRTFLFSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTYLIY 298

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  I+F  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 299 LCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDI 358

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P+++ V++ +L  + +  +HR GRT RAGR G ++  + Q       
Sbjct: 359 LVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQYDLELWL 418

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLF 392
           R+       +        + +    R  +AQRI +  + 
Sbjct: 419 RIEAALGTKLTEYSLEKDDVMVFRPRVEEAQRIAKTEIK 457


>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
          Length = 740

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 132/576 (22%), Positives = 248/576 (43%), Gaps = 40/576 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V  T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 157 NLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAAYMLPILERLLYR 216

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                P   P     L + PTREL VQV +  + L   T + + + +GG+ V  +   L+
Sbjct: 217 -----PLDGPSISRVLVLVPTRELGVQVYQVAKQLAQFTTIEIGLSVGGLDVKIQEGVLR 271

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+R     ++  ++ ++LDEAD MLD  F + +++I+    + R+
Sbjct: 272 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 331

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNI 238
            ++FSAT++  +  LA       +++ + S      ++    + +       R+  +  +
Sbjct: 332 TILFSATMTEEVEDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 391

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + +VF  T+    R   +L     +V  L G L+Q +R   L+  +D    + 
Sbjct: 392 VCRTFHDHTMVFLQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDIL 451

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   ++
Sbjct: 452 LATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERTLVKK 511

Query: 359 LFREANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           + ++A   V      P +     +  + +  D   +   +  EK++  V    +  EKI 
Sbjct: 512 IIKQAKNPVKNRIIAPDIIEKYNKKLESLESDVQKILQEEKSEKELAKVENEANRIEKI- 570

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              L++        E+ +       R + +D+ R  K   G                 K 
Sbjct: 571 ---LKVEDGK----EQRSWFQSKKERKKEKDNLRLTKKQVGKN--------------KKH 609

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLG 537
           + E   ++    + +    Q         D    E+        R   K ++  +++ + 
Sbjct: 610 EKEPFNIVQEKKKKAQNEPQK----DTAEDRAKKELEKIAAYQARLAKKSNRQKKIRTIT 665

Query: 538 GEKPDFRGY-KSSGFKSKNSQDGATKRFKRFKGASK 572
            E    R + K    K   S   A       KG  +
Sbjct: 666 DENVMNRDFAKKRPLKRPKSSFAADLTDTSKKGVKR 701


>gi|330811885|ref|YP_004356347.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379993|gb|AEA71343.1| Putative ATP-dependent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 445

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/362 (32%), Positives = 183/362 (50%), Gaps = 1/362 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F + L   L  E  +
Sbjct: 10  EPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLLQLLTTEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-ANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMKLRKGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   L  + L+ +VLDEAD MLDLGF +++  I  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S AI  LA     D + + ++  N   + +    V V    +    V+++R +  +  +
Sbjct: 189 FSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMRKNKWRQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLSAIEMLTRQTLT 368

Query: 369 WE 370
            +
Sbjct: 369 RQ 370


>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 441

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/406 (27%), Positives = 193/406 (47%), Gaps = 8/406 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +A+ ++GY   T++Q+  L   +  +DVL SA TG+GKT AF L     LL  
Sbjct: 11  DLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPAIQHLLDY 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     AP  L + PTRELA+QV  + E L   T + +A   GGV+            
Sbjct: 71  PRR--KPGAPRVLILTPTRELAMQVAEQAEELACFTKLSIATITGGVAYQNHGEIFNKNQ 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+F
Sbjct: 129 DIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQDAEKISAETRWRKQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+   +         +      A  +R+      +      +   +   +   +    
Sbjct: 189 SATLEGDLLEDFAERTLNEPVKIDAEPSRRERKKIQQWYYHADSNEHKFKLLARFIEQEQ 248

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF   R  V    + L +   +   L GE++Q +R+NA+  +++G   V ++TDV
Sbjct: 249 VSKGIVFVRRREDVRELAENLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGVVTVLVSTDV 308

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE- 362
           +ARGID+ D+  +++ +L  + +  LHR GRT RAG+KG +V  +  +  R   ++ R  
Sbjct: 309 SARGIDIDDVSHIMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYRLLGKIKRYT 368

Query: 363 ---ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                  V+    P  +A ++ + + + +        + + +K  D
Sbjct: 369 QEILKARVIEGLEPRTKAPKDGEIKTVSKKQKAKKLEKREAQKKTD 414


>gi|328720638|ref|XP_001950474.2| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Acyrthosiphon pisum]
          Length = 470

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/432 (28%), Positives = 210/432 (48%), Gaps = 31/432 (7%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN+   + + + L   G  + T +Q+  +   L   D +  A+TGSGKT+AF L +   
Sbjct: 3   FENLNLSKYLCDQLKAVGVNSPTEIQKNCIPKILDGIDCIGCAKTGSGKTLAFALPILQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E           AL + PTRELA Q+  +   +     +   V  GG+ +  + R+L
Sbjct: 63  LWEEP------YGIFALILTPTRELAYQIADQFAVIGKPKNLRHCVVTGGMEMIVQAREL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HIVV TPGRL DH+      ++  ++ +VLDEAD +L   F   I  I  + PK+R
Sbjct: 117 SNKPHIVVSTPGRLADHLESCDTFSLKRIQFLVLDEADRLLGGKFDKQIATIFKALPKER 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +  +    +K+       +E +   +++   VL   + +D  +V I+R
Sbjct: 177 QTLLFSATMTDTLEKVKMITKKNTFVYESTAEVKTVDELEQFYVLCPYNVKDGYLVEIVR 236

Query: 241 YHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               K+     ++F  T  +       L E  F  V+L   +SQ++R   L   +   ++
Sbjct: 237 QFREKDEKGLIMIFTDTCKNCQLLHMTLNEVGFDTVSLHAMISQRQRLAGLAKFKSHVSK 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVA+RG+D+P + LVI+  + +N  + +HR GRT RAGR+G +V ++ Q+  +  
Sbjct: 297 ILIATDVASRGLDIPAVSLVINHIIPNNATDYVHRVGRTARAGRQGRAVSIVTQHDIKLV 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEK----KMV 404
           + +  + N+ +          +      +IL        +  + LD    DE+    K  
Sbjct: 357 KAIEAKINIRLKEY------DVSGLHVAKILTQVHVTKREAQIKLDETDFDERRLINKRK 410

Query: 405 DVLLAKHDPEKI 416
            ++    DP+K+
Sbjct: 411 KLINEGKDPDKV 422


>gi|251764758|sp|B7ZTW1|IF4A3_XENTR RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|213624377|gb|AAI71014.1| hypothetical protein LOC100135173 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 103 CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 157 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 216

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 217 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 276

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 277 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 336

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 337 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 396

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 397 EQYYSTQIDEMPMNVADLI 415


>gi|166157858|ref|NP_001107349.1| eukaryotic initiation factor 4A-III [Xenopus (Silurana) tropicalis]
 gi|163916017|gb|AAI57178.1| LOC100135173 protein [Xenopus (Silurana) tropicalis]
          Length = 415

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 103 CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 157 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 216

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 217 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 276

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 277 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 336

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 337 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 396

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 397 EQYYSTQIDEMPMNVADLI 415


>gi|114149265|sp|Q3MSQ8|DDX4_RANLE RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog
 gi|76253272|emb|CAH56439.1| DEAD box protein [Rana lessonae]
          Length = 724

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 189/372 (50%), Gaps = 13/372 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   + + + + GYV LT +Q+  +   +  +D++  AQTGSGKT AF L + +
Sbjct: 287 TFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILA 346

Query: 61  TLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+    E+  F     P A+ +APTREL  Q+  +       T V   V  GG  +   
Sbjct: 347 HLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYGGTQMFHS 406

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + +  G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GFR+DIE +L SS 
Sbjct: 407 LKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLKSSG 466

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S    +  ++  ++ ++ +             SD++   + V    + 
Sbjct: 467 MPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSDVEQMVIEVDEFGKK 526

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + ++ IL+  G++  +VF  T+         L +      ++ G+  Q+ER  AL+  R 
Sbjct: 527 DKLMEILQEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIHGDREQKERETALRDFRT 586

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G+  V +AT VAARG+D+ ++  VI+ ++  + +  +HR GRTGR G  G ++    +  
Sbjct: 587 GQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRTGRCGNTGRAISFFDKRG 646

Query: 351 -NMQRRAERLFR 361
            + QR A  L +
Sbjct: 647 DDEQRIARSLVK 658


>gi|14211584|dbj|BAB56110.1| vasa short form [Oreochromis niloticus]
          Length = 621

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 182 IMTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 241

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 242 LQQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTG 301

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + RDL  G +++ GTPGRL D I    + ++ ++ +VLDEAD MLD+GF  D+      
Sbjct: 302 HQIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGS 361

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 362 PGMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFA 421

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G++  +VF  T+        +L +  F   ++ G+  Q +R  AL   
Sbjct: 422 KREQLIDLLKSTGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDF 481

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT V ARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 482 RSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 541

Query: 351 ----NMQRRAERLFREANVSVV 368
                + R    +  +A   V 
Sbjct: 542 GADSELARSLVTILSKAQQEVP 563


>gi|11990882|dbj|BAB19807.1| vasa [Oreochromis niloticus]
          Length = 645

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 206 IMTFDEAALCESLKRNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 265

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 266 LQQLMADGAAASCFSEMQEPDAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTG 325

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + RDL  G +++ GTPGRL D I    + ++ ++ +VLDEAD MLD+GF  D+      
Sbjct: 326 HQIRDLLRGCNVLCGTPGRLLDMIGRGKVGLTKVRYLVLDEADRMLDMGFEPDMRRLVGS 385

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 386 PGMPSKENRQTLMFSATFPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFA 445

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G++  +VF  T+        +L +  F   ++ G+  Q +R  AL   
Sbjct: 446 KREQLIDLLKSTGSERTMVFVETKRQADFIATILCQEKFPTTSIHGDREQWQREQALGDF 505

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT V ARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V     
Sbjct: 506 RSGKCSVLVATSVGARGLDIPDVQFVVNFDLPNNIDEYVHRIGRTGRCGNTGRAVSFYDP 565

Query: 351 ----NMQRRAERLFREANVSVV 368
                + R    +  +A   V 
Sbjct: 566 GADSELARSLVTILSKAQQEVP 587


>gi|295394596|ref|ZP_06804815.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972489|gb|EFG48345.1| ATP-dependent RNA helicase DeaD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 459

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 183/371 (49%), Gaps = 6/371 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++     I E+L+  G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L 
Sbjct: 4   ETFADLGVEAPIVESLTNAGITHPFPIQALTLPVALTGADIIGQAKTGTGKTLGFGIPLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L E  R     AP AL + PTRELA QV  +L          +    GG     + R
Sbjct: 64  QRILDEQSREQ-GRAPRALVVVPTRELAHQVADDLRVASRTFSPSIVTIYGGKDFEPQIR 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GA +VVGTPGRL D    + LN SH+   V DEADEMLDLGF  D+E I+ + P K
Sbjct: 123 ALKDGADVVVGTPGRLLDLYGRRVLNFSHITTAVFDEADEMLDLGFLPDVEKIVAALPAK 182

Query: 180 RRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+   +                   +  +    +           D+   + 
Sbjct: 183 RQTMLFSATMPGQVIALARRYMTQPTHIRATQASDTSTTSVNTKQYVYRAHSMDKTELVG 242

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR  G    I+F  T+ +  R T  L    FQ  AL G+L+Q  R  AL+  RDG   
Sbjct: 243 RILRAEGRGRTIIFARTKRTADRLTGELKARGFQAQALHGDLNQHMREKALKRFRDGTTD 302

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G++V +I      + 
Sbjct: 303 VLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGNTGIAVTLIDWEDVAKW 362

Query: 357 ERLFREANVSV 367
           + + R   +  
Sbjct: 363 KLINRTLGLDF 373


>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
 gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
          Length = 618

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 13/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A TGSGKT+ F L L    + E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVAVQEE 239

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 ILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRPLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQKTPPP-VLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 538

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDA 383
             + L +EA   +    A   + + + + 
Sbjct: 539 DLKHLLKEAKQRIPPVLAELNDPLEDEEI 567


>gi|74625309|sp|Q9P6U9|DED1_NEUCR RecName: Full=ATP-dependent RNA helicase ded-1
 gi|7635831|emb|CAB88635.1| probable ATP-dependent RNA helicase DED1 [Neurospora crassa]
          Length = 688

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 191/386 (49%), Gaps = 20/386 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 195 TFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 254

Query: 61  TLLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
                     PASA           P AL +APTREL  Q+  E      ++ V   V  
Sbjct: 255 QSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQIYDEARKFAYRSWVRPCVVY 314

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I
Sbjct: 315 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 374

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I           R+ LMFSAT    I  LA+++ KD + +++        +I  +   
Sbjct: 375 RRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEY 434

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V   D+ + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  
Sbjct: 435 VEDIDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERER 494

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+M R+GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 495 ALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 554

Query: 346 FVIPQNMQ---RRAERLFREANVSVV 368
               +  +   R    L +EAN  V 
Sbjct: 555 AFFNRGNRGVVRELLELLKEANQEVP 580


>gi|24372003|ref|NP_716045.1| ATP-dependent RNA helicase RhlB [Shewanella oneidensis MR-1]
 gi|32363323|sp|Q8EJQ5|RHLB_SHEON RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24345864|gb|AAN53490.1|AE015489_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 439

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/370 (33%), Positives = 203/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+ +       + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ 
Sbjct: 71  LLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
           L  G  I++GT GR+ D++R   +N++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNAD 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  D V+V IA E +   +I       +  D+   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +    N S+ 
Sbjct: 371 IETYINHSIP 380


>gi|88800218|ref|ZP_01115786.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
 gi|88777064|gb|EAR08271.1| ATP-dependent RNA helicase [Reinekea sp. MED297]
          Length = 534

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+ E GY   + +Q   L   L   D +  AQTG+GKT AF +   + LL   
Sbjct: 34  LPIALMRAIQEVGYEYCSPIQAMTLPYALAGHDCIGKAQTGTGKTAAFLITAITDLLEHR 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGA 125
                   P AL +APTRELA+Q+  + + L   + + VA V  G     ++++  +   
Sbjct: 94  LEEQYVGEPRALILAPTRELALQIAEDAKALTKYSRLKVAAVVGGMDFDKQKQQLHEQRT 153

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I+V TPGRL D +  K + +  ++ +++DEAD MLD+GF  DI+ I+ ++P+       
Sbjct: 154 DILVATPGRLIDFMNRKAVFLDQIEMLIIDEADRMLDMGFIPDIKTIVRATPRTENRQTL 213

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT S  I  LA+ +  D VRV +  + +   D++    LV+  ++   +  I+R   
Sbjct: 214 LFSATFSQDILNLAQRWTNDPVRVEVEPKVKTAEDVEQHVYLVSSEEKYPVLRRIVRQDE 273

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   +VF + R  V    + L +       LSG++ Q +R   L   ++G+  V +ATDV
Sbjct: 274 ADRVMVFANRRDIVRDLAENLKKDGIPCQVLSGDVPQNKRIRTLDGFKEGKFEVLVATDV 333

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A RGI +  +  VI+  L  +PE+ +HR GRTGRAG+KG+S+    ++   +   +    
Sbjct: 334 AGRGIHVDGVSHVINFTLPEDPEDYVHRIGRTGRAGKKGVSISFACEDDSFQIPAIEEYI 393

Query: 364 NVSVVWEPAPS 374
              +  E  P 
Sbjct: 394 KRKIDLEQVPE 404


>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]
          Length = 1657

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 222/476 (46%), Gaps = 8/476 (1%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + + +A+S+  +V+ T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 1109 NLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLLYR 1168

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 P +    L + PTREL VQV +  + L   + + + + +GG+ +  +   L+   
Sbjct: 1169 PVGGPPVT--RVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRKNP 1226

Query: 126  HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL DH++         ++ ++LDEAD MLD  F + ++ I+    + R+ ++
Sbjct: 1227 DIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQTML 1286

Query: 185  FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
            FSAT++  + +LA       VR+ + S       +    V +      DR+  +  ++  
Sbjct: 1287 FSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALVCR 1346

Query: 242  HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               ++ +VF  T+    R   +L     +V  L G L+Q +R +ALQ  ++ +  V +AT
Sbjct: 1347 TFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLVAT 1406

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            DVAARG+D+  ++ VI+  + +  E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 1407 DVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDVVK 1466

Query: 362  EANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A   V      P +    +   +++      +   + +E+++  V    +  EK+  G 
Sbjct: 1467 KAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLLKGE 1526

Query: 421  LRIHRAGLCAPEEITPVSLV-SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                R      ++        S +D  ++ S   K                  +G 
Sbjct: 1527 KGEARPWFQTKKQRKDEKKRLSLKDVPKNKSDKDKRKHKKGAKETPDERVRSEMGK 1582


>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359917|sp|A1CQA9|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 1192

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY + TS+Q   +   +  +DV+  A+TGSGKTVAF + +   +  +      
Sbjct: 569 LDVIERLGYESPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRP-LDN 627

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  DL+ GA IVV T
Sbjct: 628 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIVVCT 687

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 688 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 747

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 748 FPRNMEALARKALTKPIEIIVGGRSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDAN 807

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 808 EDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 867

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 868 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 927

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 928 LKQSGQQVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 976

Query: 418 A 418
           A
Sbjct: 977 A 977


>gi|116253340|ref|YP_769178.1| DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257988|emb|CAK09086.1| putative DEAD box ATP-dependent RNA helicase protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 576

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 197/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++   + I   L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 16  LTNFESLGVSKPIVATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPL 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R         L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 76  IEKLLADERRPD-NRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQ 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D I  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 135 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ ++FSAT+  AI  LA  Y  D V+V +    +    ++     V   + +   +  
Sbjct: 195 KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVGGKNDKTELLRK 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    A+VF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 255 SLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  +   
Sbjct: 315 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 374

Query: 358 RLFREANVSVV 368
            + R   + + 
Sbjct: 375 DIERLMGIDIT 385


>gi|6735368|emb|CAB68189.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
          Length = 603

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 17/382 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +I     +   +    YV  T VQ   +   L E+D++  AQTGSGKT AF   +
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     E  R S A  P A+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPI 269

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 270 HQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                     + ++FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 330 QMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESD 389

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++++L             T+         L  + F   ++ G+ +QQER  AL+  
Sbjct: 390 KRSHLMDLLHAQRETQ----DKTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSF 445

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G++     +
Sbjct: 446 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNE 505

Query: 351 N---MQRRAERLFREANVSVVW 369
           N   + R    L +EAN  V  
Sbjct: 506 NNAQLARSLAELMQEANQEVPE 527


>gi|71030100|ref|XP_764692.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351648|gb|EAN32409.1| RNA helicase-1, putative [Theileria parva]
          Length = 400

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 183/370 (49%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P +   D +  AQ+G+GKT  F +A    +  + 
Sbjct: 35  LNEDLLRGIYSYGFERPSAIQQRGIKPIIENYDTIGQAQSGTGKTATFSIAALQIINYD- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +   L +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H
Sbjct: 94  -----VMSCQILILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTVVRDDVHKLKAGVH 148

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I  K L    +K  +LDEADEML  GF+  I+ +    P   ++ +FS
Sbjct: 149 MVVGTPGRVYDMIEKKALLTDKMKLFILDEADEMLSRGFKGQIQDVFKRLPPDIQVALFS 208

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L   + +   R+ +  +      I    +L+    +   + ++        
Sbjct: 209 ATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYILIDKEYKFETLCDLYESVTITQ 268

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI++C+TR  V   T  + E  F V ++ G++ Q+ER   ++  R G  RV I TD+ AR
Sbjct: 269 AIIYCNTRRKVDYLTLKMQEKDFTVSSMHGDMGQKERDLIMREFRSGSTRVLITTDLLAR 328

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + LVI+ +L  +P+N +HR GR+GR GRKG+++  +        + +    N  
Sbjct: 329 GIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFVTHQDMDTMKSIENYYNTQ 388

Query: 367 VVWEPAPSVE 376
           +   PA   E
Sbjct: 389 IEEMPADIAE 398


>gi|313896720|ref|ZP_07830268.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974637|gb|EFR40104.1| DEAD-box ATP-dependent RNA helicase CshA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 423

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/396 (31%), Positives = 207/396 (52%), Gaps = 14/396 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  I   + +   L  RG    T VQE  +      +DV+  AQTG+GKT+AF L +
Sbjct: 1   MMPFAEIGVSEALCTLLKNRGISVPTPVQERAVPAMRVGRDVIAQAQTGTGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +           AL IAPTRELA+Q+ R  E L A   +   +  GG  + R++
Sbjct: 61  LEKIKPQGA------VVQALVIAPTRELAIQIARVAEPLAAALSIGTTLVYGGADIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    +V+GTPGRL DH+R   L +  +  VVLDEADEML LGF +D+E +L  + +
Sbjct: 115 EKLRRHPQLVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLKLGFIEDVETLLGHTAQ 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L K +  +  R+ I  E+    +I+  A+ V   ++ + +   
Sbjct: 175 DYQLALFSATMPERIVQLTKRFMHNPARIKIEGEHTTLENIEQIALSVNEEEKLDRLCAS 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC+T+         LA   + V ALSG L+Q +R+  L+  R  + ++ 
Sbjct: 235 INEEAPYLAMVFCATKERTHALMMALAGRGYLVDALSGNLTQTQRAFVLRQFRAAKLQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + +L     + +HR GRTGRAG +G ++ ++      +  +
Sbjct: 295 CATDIAARGLDIEGVTHVYNYDLPPTVTDYIHRIGRTGRAGARGRAITLVTARQHEKLRK 354

Query: 359 L-----FREANVSVVWEPAPSVEAIR-ERDAQRILQ 388
           +      R A  +V  +P P+ +  + +++ +R++Q
Sbjct: 355 IEAALKERLARAAVKKKPRPAPQKAQPDKEGRRVVQ 390


>gi|1170508|sp|P41381|IF4A8_TOBAC RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8;
           AltName: Full=ATP-dependent RNA helicase eIF4A-8
 gi|475219|emb|CAA55639.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
 gi|475221|emb|CAA55640.1| translation initiation factor (eIF-4A) [Nicotiana tabacum]
          Length = 413

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G H
Sbjct: 105 ----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D +R + L   +L+  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNV 400

Query: 366 SVVWEP 371
            +   P
Sbjct: 401 IIEELP 406


>gi|225429488|ref|XP_002278119.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081635|emb|CBI20640.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 188/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 105 ----GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNV 400

Query: 366 SVVWEP 371
            V   P
Sbjct: 401 VVEELP 406


>gi|147779855|emb|CAN61608.1| hypothetical protein VITISV_040122 [Vitis vinifera]
          Length = 413

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 188/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 105 ----GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNV 400

Query: 366 SVVWEP 371
            V   P
Sbjct: 401 VVEELP 406


>gi|156740947|ref|YP_001431076.1| DEAD/DEAH box helicase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232275|gb|ABU57058.1| DEAD/DEAH box helicase domain protein [Roseiflexus castenholzii DSM
           13941]
          Length = 450

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 183/370 (49%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I   + + GY   T +QE ++   L  +DV+  AQTG+GKT AF L +   L+   
Sbjct: 8   FHPQINAGIRDLGYHTPTPIQEQVIPHALAGRDVIGIAQTGTGKTAAFVLPILHHLMR-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P     A+ + PTRELA Q+   +E L   TG+      GGV    + + L+ G  
Sbjct: 66  ---GPRGRVRAMIVTPTRELAEQIQGVIEALGKHTGIRSVTLYGGVGYQGQIQRLRRGVE 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V  PGRL DH+    L + HL+ + LDEAD+M D+GF  D+  IL  +P +R+ ++FS
Sbjct: 123 IAVVCPGRLLDHLERGTLTLDHLEVLTLDEADQMFDMGFLPDVRRILRLAPVERQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+ +LA+   +D + V I       +   +    V    + + ++ +L    A++
Sbjct: 183 ATMPDAVRSLAREALRDPLTVQIGRSAPVATV-THAIYPVPEHLKTSLLIELLERTDAES 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    R    LA   ++  +L G LSQ  R  AL   R GR ++  ATD+AAR
Sbjct: 242 VLIFTRTKHRAQRLGDTLARLGYRATSLHGNLSQNRRQAALDGFRSGRYQILTATDIAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ ++    E   HR GRTGRA R G +  ++ +        + R     
Sbjct: 302 GIDVARISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRGDTAMVRAIERLIGEP 361

Query: 367 VVWEPAPSVE 376
           +  E  P  +
Sbjct: 362 LKREIVPGFD 371


>gi|149204026|ref|ZP_01880994.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
 gi|149142468|gb|EDM30513.1| DEAD/DEAH box helicase-like protein [Roseovarius sp. TM1035]
          Length = 429

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 201/376 (53%), Gaps = 7/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G    T +Q   +   L   DVL  AQTG+GKT+AFGL L + L+   
Sbjct: 3   LPAALVRKLANEGITEPTPIQTHAIPHALNGFDVLGLAQTGTGKTMAFGLPLITALMQAP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +   +L +APTRELA Q+   L  L   + + + + +GG S++ + + L+ G  
Sbjct: 63  GKPAPKT-IRSLILAPTRELASQIRDALLPLVKDSPIKINLVVGGASINPQIKRLEQGTD 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I  + + +     +VLDEAD+MLDLGF   +  I      +R+ ++FS
Sbjct: 122 ILVATPGRLLDLIDRRAVRLDAAHFLVLDEADQMLDLGFIHALRRIAGLLAAERQTMLFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA +Y K   RV ++   +    +      VA + + + ++ +L  H ++ 
Sbjct: 182 ATMPKQMEELAGSYLKHPKRVQVSPPGKAADKVTQEVHFVAKAAKPDLLIELLAKHKSEL 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    +  K L +  + V A+ G  SQ +R  AL+  RDG  ++ +ATDVAAR
Sbjct: 242 ALVFGRTKHGSDKLAKRLEQAGYSVAAIHGNKSQGQRERALKSFRDGHVKILVATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD++ V + EL + P+N +HR GRT RAGR G ++     +     + + +    +
Sbjct: 302 GLDIPDVKHVYNYELPNVPDNYVHRIGRTARAGRDGAAIAFCAPDEMGELKDIQKVLGTT 361

Query: 367 V------VWEPAPSVE 376
           +       WE  P  +
Sbjct: 362 IPVASGRPWEVLPDPK 377


>gi|75321947|sp|Q5Z6G5|RH35B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35B
 gi|53793229|dbj|BAD54454.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
 gi|125598365|gb|EAZ38145.1| hypothetical protein OsJ_22496 [Oryza sativa Japonica Group]
          Length = 619

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 191/395 (48%), Gaps = 14/395 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  AL  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 180 LPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEE 239

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  L + P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 ILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRTQM 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 300 EVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     + VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G    +ER +A +  +     V 
Sbjct: 420 LQKTPPP-VLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D+PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 479 VATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTETTLL 538

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             ++L  E+   +       ++  +E D   I Q 
Sbjct: 539 DLKQLLIESKQRLPPI-LADLDDPQEDDKVAIAQQ 572


>gi|322818320|gb|EFZ25769.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 631

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 190/400 (47%), Gaps = 24/400 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F   N P  + E ++   Y   T VQ+  +   L   D++  AQTGSGKT A+ + L
Sbjct: 130 MESFASMNTPMALKENVARCRYQKPTPVQKYGIPVVLCGHDLMACAQTGSGKTAAYLIPL 189

Query: 59  ASTLL----AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S++L      +      S+P AL +APTREL++Q+  E      +TG+   V  GG   
Sbjct: 190 VSSILSNVTPNHQGQGSRSSPAALVMAPTRELSIQIHEEGRKFTYRTGIRCVVVYGGADP 249

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  +L  G  ++V TPGRL D      +  S ++ +VLDEAD MLD+GF   I  I+ 
Sbjct: 250 RHQVHELSRGCGLLVATPGRLWDVFTRGYVTFSSIRFMVLDEADRMLDMGFEPQIRMIVQ 309

Query: 175 SSPKKRRMLM------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
                           +SAT    I  LA+ +      + +        +I      V  
Sbjct: 310 GQESDMPPPGQRQTLLYSATFPTEIQQLAREFLHRHYFLQVGRVGSTTENITQDVRWVED 369

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +D+   ++ IL  +  +  +VF   +       + L  +     ++ G+  Q+ER  AL+
Sbjct: 370 NDKREHLLRILHENQNQLILVFVEKKRDADYLERFLRNNRVACASIHGDRVQREREEALK 429

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           M +    +V +ATDVA+RG+D+PD+ +VI  ++ SN ++ +HR GRTGRAG+ G ++   
Sbjct: 430 MFKSASCQVLVATDVASRGLDIPDVSIVIQYDMPSNIDDYVHRIGRTGRAGKVGRAISF- 488

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
                      F E N ++V +  P +    +   Q+I+ 
Sbjct: 489 -----------FNEKNRNIVDDLVPLLNETHQNVLQQIMD 517


>gi|168037666|ref|XP_001771324.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677413|gb|EDQ63884.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 413

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 190/373 (50%), Gaps = 9/373 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  ++ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDVMDLHENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L     V V  C+GG SV  ++R
Sbjct: 100 QQLDYQ------LLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R   L    +K  VLDEADEML  GF+D I  I    P+K
Sbjct: 154 ILQAGVHVVVGTPGRVYDMLRRNALRADAIKCFVLDEADEMLSRGFKDQIYDIFQLLPQK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    V++ +  +      I      +     + + + ++
Sbjct: 214 LQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++  R  + 
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQD 393

Query: 359 LFREANVSVVWEP 371
           + R  N  +   P
Sbjct: 394 IQRFYNTVIEELP 406


>gi|159468063|ref|XP_001692202.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
 gi|158278388|gb|EDP04152.1| cytoplasmic DExD/H-box RNA helicase [Chlamydomonas reinhardtii]
          Length = 405

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 174/377 (46%), Gaps = 9/377 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 33  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFCIPVVER 92

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +              AL + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 93  VDPTRPVI------QALLLVPTRELALQTAQVCKELSKYLSIEVMVTTGGTSLKDDIMRL 146

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIVV TPGR+ D        ++  + +V+DEAD++L   F+  +E ++   P  R+
Sbjct: 147 YQTTHIVVATPGRVVDLASKGVARLNECRMLVMDEADKLLSPEFQPVVEQLIGYLPDDRQ 206

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +    + + +    +N+  E             V    + + +  +   
Sbjct: 207 IMLYSATFPVTVKAFKEKFLRKPYIINLMEELTLKGV-TQFYAFVEEKQKVHCLNTLFSK 265

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 266 LRINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMLQSHRNRVFHDFRNGHCRNLVSS 325

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I  + +    ++ +
Sbjct: 326 DLFTRGIDIQSVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYDDRINLFKIEQ 385

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   PA   E +
Sbjct: 386 ELGTEIKPIPAQIEEKL 402


>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
 gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 812

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 17/456 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   + +  A++ERGY + T VQ     P +  +D++V ++TG+GKT AFGL L  
Sbjct: 30  SFEDLHLSEPLRRAIAERGYTHPTPVQAKAFQPAMEGRDLIVRSKTGTGKTAAFGLPLLE 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+  R        AL + PTRELA+QV  EL  L    GV VA   GG S+ ++   
Sbjct: 90  KIPADERRV------RALILCPTRELALQVADELRALGKYKGVKVAAIYGGASMKQQEDA 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+VGTPGR+ DHI    L +      VLDEADEML+ GF +++  ILD  PK R
Sbjct: 144 LEEGTPIIVGTPGRVFDHIGRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKNR 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           ++L+FSAT+   I  L   Y  +A  + ++ +      I + R  +     +   ++ +L
Sbjct: 204 QVLLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 NAI+FC+TR   +  T VL  + F    L+G+L Q+ER   +  ++ G     +
Sbjct: 264 EKAEPPNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG---RAGRKGMSVFVIPQNMQRRA 356
           ATD+AARGID+  LE VI+  L  +P   LHR GRTG       KG ++ +         
Sbjct: 324 ATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIG---NKGTAINLFSGRELATY 380

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPE 414
             L ++  +    +  P+ E       +R +++       ++      +   L  + D +
Sbjct: 381 TTLEKKYGIKFEKQEMPAPEEAMRLWTERHVRELREGASGTVFEGFLPLAAQLKQRPDAD 440

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
            + A  L+   + L   +          R+      
Sbjct: 441 DLVAFLLKYFFSHLRMEKAQAAQEPEQRRETPERKP 476



 Score = 43.8 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
            G +   +++G +   +   L   L   +G     +  I ++P   +V V+ +  D    
Sbjct: 735 PGQTRLWVNLGKQDGLDDAGLTAAL-EGAGAPAGKVARIDLRPTYAYVFVADEDADAFEA 793

Query: 524 TVKLDKG-IQLKYLGGEK 540
           T     G   +K    +K
Sbjct: 794 THGKPHGEKTIKLERAKK 811


>gi|239995669|ref|ZP_04716193.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
          Length = 408

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 187/370 (50%), Gaps = 6/370 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + +  A ++ G+   TS+QE ++   L  +D+L SA TG+GKT AF L    
Sbjct: 2   TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P  A   L + PTRELA+QV  +   +   T +V  V  GG++   ++  
Sbjct: 62  FLL-DYPRRQPG-ATRILILTPTRELALQVYEQALAITKHTQIVCGVITGGINYGTDKET 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  ++
Sbjct: 120 LSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRK 179

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNI 238
           + L+FSAT     + T A +   +   +      ++ + I     L   ++ +   +VNI
Sbjct: 180 QNLLFSATLEGKGVKTFAHDILNNPEVIEANPSRKEKNKIHQWYHLADDMNHKQALLVNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+     +A+VF  TR  +      LA     V  L GE+ Q +R  AL   + G   + 
Sbjct: 240 LKQETTTSAVVFVKTRERLQMLKDFLASKDIPVCWLQGEMPQDKRIAALARFKSGEVPIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P++  VI+ ++    +  +HR GRTGRAG KG ++ ++  +      +
Sbjct: 300 LATDVAARGIDVPNVSHVINFDMPRKADVYVHRIGRTGRAGAKGTAISLVEAHDFDMVAK 359

Query: 359 LFREANVSVV 368
             R     + 
Sbjct: 360 TARYMGEPLK 369


>gi|238897679|ref|YP_002923358.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465436|gb|ACQ67210.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 454

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/392 (28%), Positives = 191/392 (48%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL ++GY++ T++Q  ++   +  +D+L SA TG+GKT+AF +     L+  
Sbjct: 10  DLDPCLLRALEDKGYLSATAIQTTVIPKAMEGRDLLGSAPTGTGKTIAFLIPALQHLIDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P  L +APTRELA+QV  +   L   T + VA   GGV+            
Sbjct: 70  PKK--KPGPPRILILAPTRELAIQVADQATELAKYTSLKVAKITGGVAYMNHTEIFSTNQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DILVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFAQDIEVISAETRWRKQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT   +       +  +         S   +   +        L  +   +  +L+   
Sbjct: 188 SATLESATIREFSERVLRDPIYLEAAPSVRERKKILQSYYRSDNLPHKIALLCYLLKTPS 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V      L         L GE+ Q +R+ A+  +  GR +V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHELVHRLQSEGIHSGYLEGEMVQTKRTEAIARLNSGRIQVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + ++    +  LHR GRT RAGRKG ++ +I  +     +++ R  
Sbjct: 308 ASRGLDIEDISHVFNFDMPYTGDVYLHRIGRTARAGRKGTAISLIEAHDHLLLKKVERYL 367

Query: 364 NVSV----VWEPAPSVEAIRERDAQRILQDPL 391
             ++    V E  P+ +A  E+ A +  +  L
Sbjct: 368 KKTIKPRVVDELRPTTKAPNEKKAGKPSKKVL 399


>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase-like [Mesorhizobium sp. BNC1]
 gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
          Length = 460

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 3/360 (0%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   + + +A +  G      +Q+  + P L   D+L  AQTGSGKT AF L + S 
Sbjct: 28  FADLGISETLLKAAAAAGMTEPKPIQKEAIPPFLAGSDILGVAQTGSGKTAAFSLPILSK 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           ++    +  P +A  AL + PTRELAVQ+ + +  L     V  A+ +GGVS H + + +
Sbjct: 88  IIGLGTKRRPRTA-RALILVPTRELAVQIEKVVRELAKGAHVSTALVLGGVSRHSQIKRM 146

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +++ TPGRL D +R   + +S    +VLDEAD MLD+GF +D+  I  ++   R+
Sbjct: 147 AQGVDVLIATPGRLTDLVRDGAVVLSETTWLVLDEADRMLDMGFINDVRRIAKATHPARQ 206

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT+   I  LA +  K+ VR+ ++ +    ++I    ++     +   +  +L  
Sbjct: 207 TALFSATMPREIEALASSLLKEPVRIEVSPQGTTAAEIRQSVIMARTKQKRKLLSEMLAD 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+    R TK L    FQ   + G  SQ  R  AL   R+G  R+ +AT
Sbjct: 267 EKMAQVIIFSRTKHGADRVTKDLQHDGFQAAVIHGNKSQNARQRALNDFREGAVRILVAT 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P +  V++ +L    E+ +HR GRTGR G +G ++ +       +  ++ R
Sbjct: 327 DIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGEVSKLRQVER 386


>gi|294139497|ref|YP_003555475.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
 gi|293325966|dbj|BAJ00697.1| ATP-dependent RNA helicase SrmB [Shewanella violacea DSS12]
          Length = 408

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  +  ++ E+L   G+   T++Q+  +   + +KD+L  A TG+GKT +F L    
Sbjct: 2   LFEDFLLDPILLESLKAMGHNKPTTIQQQTIPLAMEQKDILARAPTGTGKTASFLLPAIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    RF   +    L + PTRELA Q+ R    L     + +A+  GG+    +   
Sbjct: 62  HLIDFPRRFGGQA--RVLVLTPTRELASQIHRYASHLSTDLDLDIAIITGGMPYGPQEDA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N   I+V TPGRL +++     N   ++  V+DEAD MLD+GF   +E +   S  ++
Sbjct: 120 LKNNVDILVATPGRLMEYLDKGNFNAEEVEVFVIDEADRMLDMGFSAAVETLAIESVGRK 179

Query: 181 RMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT   S       +           A  + +     +  +      +   + NI
Sbjct: 180 QTMLFSATLEGSDVGRFSHQLLTNPVKVEAEAPRSEKAKIHQWIHIADNKEHKFAMLCNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       IVF  TR  V+    +L         + G++ Q++R  AL     G   V 
Sbjct: 240 LRQEDVTRTIVFVKTREGVASLEGLLQREGIICSFMRGDMEQKQRFQALGRFTKGEVNVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRT RAG KG ++ ++  +  R   +
Sbjct: 300 LATDVAARGIDVDDISHVINFDMPRSADTYVHRIGRTARAGAKGTAISLVEAHDIRVVGK 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R  +  +       ++ +R ++ +
Sbjct: 360 IERYIDQVLKRR---FIKDLRPKNKE 382


>gi|195952677|ref|YP_002120967.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932289|gb|ACG56989.1| DEAD/DEAH box helicase domain protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 364

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 192/370 (51%), Gaps = 9/370 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M +F  +   + +AL + GY   T +Q   +   L   D+L  A TG+GKT AF + +  
Sbjct: 1   MSLFSKLSLELQKALEDAGYKEPTPIQRDAIPLALEGYDILGQAATGTGKTGAFAIPIVE 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL + PTRELA+QV  ++  L     +   V  GG SV +    
Sbjct: 61  KLQKGKPDVK------ALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDI 114

Query: 121 -LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  I++GTPGR+ D I  K LN+S ++ +VLDE D+MLD+GF +DIE+I+   PK+
Sbjct: 115 LQNKNVDILIGTPGRIKDLIDRKALNLSKVEYLVLDEFDQMLDMGFIEDIEYIISFLPKE 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R   MFSAT+   I  LAK + K   +     S   + +  +    L +  ++ + +++I
Sbjct: 175 RTTYMFSATVPSRIELLAKRFLKSDFKFVKVQSVELKPNIEEKMIKLSSPGEKIHELMHI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  +  ++F  T+        +L +   +  AL G+L+Q++R  AL   + G   + 
Sbjct: 235 IDTHPMEKMLIFVKTKKDAKDLFFLLTKKGIRAQALHGDLTQRQREKALSAFKSGAVSIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D+ +VI+  +  +PE  +HR GRTGR G+ G +  +I     +   R
Sbjct: 295 IATDVAARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALWR 354

Query: 359 LFR-EANVSV 367
           + +  + +SV
Sbjct: 355 IKKLRSKISV 364


>gi|291396480|ref|XP_002714472.1| PREDICTED: rCG25924-like [Oryctolagus cuniculus]
          Length = 649

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/393 (29%), Positives = 187/393 (47%), Gaps = 9/393 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P+ + + + + G+   T +Q       L+  DV+  AQTG+GKT+++ +     L 
Sbjct: 250 FETFPE-VMKNIEKAGFKKPTPIQSQTWPIVLQGIDVIGVAQTGTGKTLSYLMPGFIHLD 308

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+   +      GG     + +D+  
Sbjct: 309 CQP--VEKRNGPGMLVLTPTRELALQVQAECSK-YSYKNLRSVCIYGGGDREAQIQDVSK 365

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D      + +  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 366 GVDIVIATPGRLNDLQMNNFIRLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 425

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y K+ + V + + +    S +    ++    ++   I   L   
Sbjct: 426 MTSATWPYGVRRLAQSYLKEPMLVYVGTLDLVAVSTVKQNIIITTEEEKRIHIQKFLENM 485

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +      +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 486 SPKDKVIVFVSRKIVADHLSSDLVLQHLSVESLHGNREQSDREKALKNFKTGKVRILIAT 545

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAER 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAG  G+S+ +I +N  R       
Sbjct: 546 DLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGNTGVSITLITRNDWRVAAELIH 605

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +   AN ++  E     E       +R ++  +
Sbjct: 606 ILERANQNIPEELVAMAERYNASKLKREMEKKM 638


>gi|167522064|ref|XP_001745370.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776328|gb|EDQ89948.1| predicted protein [Monosiga brevicollis MX1]
          Length = 498

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/401 (27%), Positives = 199/401 (49%), Gaps = 16/401 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   L +  Y N T +Q   +   +  +D+L  A+TG GKT+AF L L   ++ + 
Sbjct: 67  LSKTILAILKQLKYENPTPIQAQAIPVVMSGRDMLGIAKTGCGKTLAFLLPLLRHVMDQR 126

Query: 67  DRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 ++P  + L ++PTRELA+Q+  E         + V    GG  +  +   L++ 
Sbjct: 127 KCAQGEASPGCIGLIMSPTRELALQIYNETRKFCKHLDLRVVCLYGGSDISDQIALLKSA 186

Query: 125 AHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           A I+V TPGR+ D      G+  N+     V LDEAD M D+GF   +  ILD+    R+
Sbjct: 187 AEIIVCTPGRMIDMLTVNSGRVTNLRRCTYVALDEADRMFDMGFEPQVTRILDNIRPDRQ 246

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT   A+  LA+      V V +   +   + I    +++   ++   ++ +L +
Sbjct: 247 TVMFSATFPRAMEALARKILTKPVEVTVGGRSIVSNIIKQNVIVMREGEKFQKLLELLGH 306

Query: 242 HGAKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              + +I+ F   +       + L ++ +  +AL G +SQ++R++ L+  R G  ++ +A
Sbjct: 307 FFEQGSIIVFVHKQEKADSVLENLIKNGYPCLALHGAVSQEDRASNLRDFRAGNVKIMVA 366

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T +AARG+D+  L LV++ +  ++ E+ +HR GRTGRAGR+G +   +  + ++ A  + 
Sbjct: 367 TSIAARGLDVKQLCLVVNYDCPNHYEDYVHRCGRTGRAGREGTAYTFLTADDKKYAGNII 426

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           R  + S    P          D Q+ L D   L+     +K
Sbjct: 427 RALHASKAQVP---------EDLQK-LWDQYKLEQKAAGKK 457


>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
           1_1_47]
 gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 458

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 208/381 (54%), Gaps = 10/381 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE   +   +  A+   GY   T++Q   +   L+ +DV+ +AQTG+GKT +FGL + 
Sbjct: 5   QNFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVL 64

Query: 60  STLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             LL   N   SPA  P+  L ++PTRELA Q    L    A T + + V  GGV +  +
Sbjct: 65  QKLLPLANTSTSPARHPVRVLILSPTRELADQTAEALSNYAADTPIRIGVVYGGVDIKPQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I++ TPGRL DH+  +  N++    V+LDEAD MLD+GF  DI  IL++ P
Sbjct: 125 AEALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRMLDMGFLPDISRILNALP 184

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ LMFSAT SP I  LA N+  D V + +A +N   + I      V    + +A+V 
Sbjct: 185 KKRQNLMFSATFSPEIKKLAGNFLTDPVVIEVARQNATAATIKQEVFSVNELQKTDALVE 244

Query: 238 ------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                           IVF + + +  R  + L +  F   A+ G+ +Q+ER   L+  +
Sbjct: 245 LLKTRGEDPDGKPLQTIVFVNAKLTARRLARELEKCGFNADAIHGDKTQEERLKLLKDFK 304

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG   + +ATDVAARG+D+ +L LVI+ ++   PE+ +HR GRTGRAG  G+++ ++   
Sbjct: 305 DGTLNIMVATDVAARGLDIAELPLVINYDVPFVPEDYVHRIGRTGRAGSSGLALMLVTDK 364

Query: 352 MQRRAERLFREANVSVVWEPA 372
            ++  + + +   V+++ +  
Sbjct: 365 DKKSFDAIRKLTRVNLIPQEL 385


>gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra vulgaris]
          Length = 628

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 196/389 (50%), Gaps = 21/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  N+ ++I   +S   Y   T VQ+  +     ++D++  AQTGSGKT AF + +
Sbjct: 170 IETFDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPI 229

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S +  E    +P++          P+AL +APTRELA Q+  E      ++ +   V  
Sbjct: 230 LSRIFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVY 289

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  V  + RD+  G H++V TPGRL D I+   + +  +K +VLDEAD MLD+GF   I
Sbjct: 290 GGADVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQI 349

Query: 170 ----EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
               E        +R+ LMFSAT    I  LA+++  + + + +        +I  + V 
Sbjct: 350 REIVEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVW 409

Query: 226 VALSDRDNAIVNILRYHGAKN-AIVFCSTRASVS--RFTKVLAEHLFQVVALSGELSQQE 282
           V   D+   ++++L   G  +  +VF  T+                +   ++ G+  Q+E
Sbjct: 410 VEEHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQRE 469

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   R G   + +AT VAA+G+D+P+++ VI+ ++ S+ E  +HR GRTGRAG  G
Sbjct: 470 REQALASFRVGTTPILVATAVAAKGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRAGHTG 529

Query: 343 MSVFVI---PQNMQRRAERLFREANVSVV 368
           +++       +N+ R    +  EA   + 
Sbjct: 530 LAISFFNDKNRNVARDLMDILAEAKQEIP 558


>gi|320588174|gb|EFX00649.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 1617

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 128/507 (25%), Positives = 222/507 (43%), Gaps = 38/507 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M++F    + I   ++  G+   T +Q   +   +   DV+  A TGSGKT AF L +  
Sbjct: 268 MRLF---SRPILRGIAAAGFDTPTQIQAKTIPFGIGGHDVVGQAVTGSGKTAAFLLPILE 324

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R +       + + PTRELAVQ  +    L A T + +A+ +GG S       
Sbjct: 325 RLLH---RPTNVPKTRVVILTPTRELAVQCHKVAVKLAAFTPITMALTVGGTSFKSSEAS 381

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++   IV+GTPGR  DH+R      +  ++ +VLDEAD ML  GF D++  I+ + P+ 
Sbjct: 382 LRSRPDIVIGTPGRFIDHMRNSPSFAVDGVEILVLDEADRMLQDGFADELNEIVQTLPRG 441

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIV 236
           R+ L+FSAT+  ++  L +      VR+    ++R    +    V +       R   +V
Sbjct: 442 RQTLLFSATMGASVDQLIRVGLSRPVRIQADDKSRTAGTLTQAFVRLRQGREDRRLGYLV 501

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       +AI+F   + S+     V          L G + Q ER  +L+  R G  +
Sbjct: 502 ELCTTLYRDHAIIFFREKRSIHEARIVFGLLGLTCEELHGNIKQAERIASLESFRRGEVQ 561

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+A+RG+D+  +E VI+ E+  N ++ +HR GRT RAGR+G++V ++ +  ++  
Sbjct: 562 FLLASDLASRGLDIKGVETVINYEVPKNLDDYIHRIGRTARAGRRGLAVTIVSEKDRKFV 621

Query: 357 ERLFR------------EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD----SIQGDE 400
           + + +            +   +V     P  + +R R  Q    DP   D     I    
Sbjct: 622 KEVVKAMRAGGDKEQKEKKGKTVGETGLPMPQQVRIRSQQ---VDPAAADRWQAKIDAMA 678

Query: 401 KKMVDVLLAKHDPEKIAAGFLRIHRAG--LCAPEEITPVSLV----SGRDRFRDD---SR 451
           + + +++  +     +A   + + R    L   +EI          SGRD+        R
Sbjct: 679 EDVAEIVAEERQVRAMAQAEMEVTRGENLLKHRDEIMARPKRTWFESGRDKEAKRQLQRR 738

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQK 478
             +                  + +K  
Sbjct: 739 EAQAERSDETKKSTMERLRDQLKAKHG 765


>gi|302845088|ref|XP_002954083.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
 gi|300260582|gb|EFJ44800.1| hypothetical protein VOLCADRAFT_82651 [Volvox carteri f.
           nagariensis]
          Length = 612

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 187/382 (48%), Gaps = 15/382 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+PQ + + +    +   T VQ+  +   L  +D++  AQTGSGKT AF   +
Sbjct: 154 VHSFEELNLPQCMMDNIKRCKFTKPTPVQKHSITIGLAGRDLMACAQTGSGKTAAFCFPI 213

Query: 59  ASTLLAEN-----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            +++L +       R S  + P AL +APTREL  Q+  E       TG+   V  GG  
Sbjct: 214 IASMLLKGYQPAAGRNSRKALPGALVLAPTRELTSQIYDEARKFTYMTGLRPVVIYGGAP 273

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + RDL+ G  I+V TPGRL D I    + +S +  + LDEAD MLD+GF   I  I+
Sbjct: 274 APNQLRDLERGCDILVATPGRLSDFIERGRVGLSSILFLCLDEADRMLDMGFEPQIRRIV 333

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +             MFSAT    I  LA ++  + V + +         I      V+  
Sbjct: 334 EQEDMPPVGQRQTLMFSATFPKEIQRLAADFLSNYVFLTVGRVGSSTDLIVQHIEYVSSD 393

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++ N +++++        +VF  T+       ++L  +     ++ G+ SQ++R  AL+ 
Sbjct: 394 EKQNTLLDLISTVEG-LTLVFVETKRGADELERILTRNQLPATSIHGDRSQEQREMALRS 452

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G+  V +ATDVAARG+D+P +  VI+ +L  + ++ +HR GRTGRAG KG++     
Sbjct: 453 FKSGKTPVMVATDVAARGLDIPHVTHVINYDLPKDIDDYVHRIGRTGRAGHKGLATAFFT 512

Query: 350 QNM---QRRAERLFREANVSVV 368
                  R    +  E N +V 
Sbjct: 513 DADAPLARSLVEVLTETNQAVP 534


>gi|302765623|ref|XP_002966232.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
 gi|300165652|gb|EFJ32259.1| hypothetical protein SELMODRAFT_143895 [Selaginella moellendorffii]
          Length = 412

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 194/380 (51%), Gaps = 9/380 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  R  DV+  AQ+G+GKT  F   + 
Sbjct: 39  ETFDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGIL 98

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L          +   AL +APTRELA Q+ + +  L       V  C+GG  V +++R
Sbjct: 99  QQLDGH------LNECQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQR 152

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             Q G H+VVGTPGR+ D +R + L   H++  VLDEADEML  GF+D I  I    P K
Sbjct: 153 ICQAGVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAK 212

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +  + VR+ +  +      I      +     + + + ++
Sbjct: 213 VQVGLFSATMPPEALEITRKFMSNPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 272

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+TR  V   T  L      V A  G++ Q  R   ++  R G +RV 
Sbjct: 273 YETLAITQSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ ++    
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFD 392

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + +  N  +   P+   + I
Sbjct: 393 IQKFYNTVIEELPSNVADLI 412


>gi|302410479|ref|XP_003003073.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
 gi|261358097|gb|EEY20525.1| ATP-dependent RNA helicase DBP2 [Verticillium albo-atrum VaMs.102]
          Length = 577

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/410 (27%), Positives = 191/410 (46%), Gaps = 44/410 (10%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  N P+ + + +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 134 VETFDEANFPRYVIDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 193

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 194 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQQEIAKFGKSSRIRNTCVYGGVPKGPQI 252

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 253 RDLSRGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 312

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            ++ +M+SAT    +  LA ++  D ++VNI S     N + + I          DR   
Sbjct: 313 DKQTVMWSATWPKEVRALASDFLDDFIQVNIGSMDLAANHRITQIVEVVSESEKRDRMIK 372

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +     +    A+VF  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 373 HLEKAMENKENKALVFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGK 432

Query: 295 ARVCIATDVAARGI----------------------------------DLPDLELVIHAE 320
           + + +ATDVA+RGI                                  D+ ++  VI+ +
Sbjct: 433 SPIMVATDVASRGIVKDTARCIRLSSPVPCWNVATQTPVTRMLTRLPQDVRNITHVINYD 492

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367
             +N E+ +HR GRTGRAG  G ++ +   +  ++A  L    REA   +
Sbjct: 493 YPNNSEDYIHRIGRTGRAGATGTAITLFTTDNSKQARDLVNVLREAKQEI 542


>gi|294875454|ref|XP_002767329.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239868892|gb|EER00047.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 447

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 166/374 (44%), Gaps = 10/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   
Sbjct: 73  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEK 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + PTRELA+Q     + L       V V  GG S+  +   L
Sbjct: 133 VNTDIT-----DGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HI+VGTPGR+ D       +        V+DEAD++L   F+  +E ++   PK++
Sbjct: 188 YNTVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEK 247

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++  +   P      KN            E      +      V    + + +  +  
Sbjct: 248 RQILMFSATFPVTILDFKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 307

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F    +   + Q  R+      R+G  R  ++
Sbjct: 308 KLTINQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 367

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+ ++ +VI+ +   N E  LHR GR+GR G  G+++ ++  + +    R+ 
Sbjct: 368 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 427

Query: 361 REANVSVVWEPAPS 374
            E    +  +P PS
Sbjct: 428 HELGTEI--KPIPS 439


>gi|195453112|ref|XP_002073643.1| GK14214 [Drosophila willistoni]
 gi|194169728|gb|EDW84629.1| GK14214 [Drosophila willistoni]
          Length = 745

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 176/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 311 LPDYVMKEIRRQGYKEPTPIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 370

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 371 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 429

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 430 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 489

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 490 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEDKLKSLLSDIYDT 549

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 550 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 609

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 610 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 669

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 670 DVLREANQEI 679


>gi|328868659|gb|EGG17037.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 834

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 168/372 (45%), Gaps = 24/372 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  + EA++++GY   + VQ   +   L  +DVL  A+TGSGKT AF + +   +  
Sbjct: 414 SSLPADMLEAIAKQGYEKPSPVQMQAIPVALSGRDVLGIAETGSGKTAAFVIPMLVYISK 473

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    + S    P A+ +APTRELA+Q+ +E        G      +GG  +  +   L 
Sbjct: 474 QPRMTKESEQDGPYAVVMAPTRELALQIEKEARVFANFLGYRTVALVGGQPIEEQIYQLS 533

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF   +E +LD+ P     
Sbjct: 534 KGCEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADMMIDMGFELQVESVLDAMPSAFLK 593

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY--------------------- 221
                          + Y+   +         +     Y                     
Sbjct: 594 SENEEEAEKQERDRHRVYRTTILYSATMPPKVERLSRKYLRRPVHVIIGEAGKAVDRIKQ 653

Query: 222 -RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
               + + +D+   + ++L        IVF + +       +++ E      +L    SQ
Sbjct: 654 TVIFVKSDNDKHQQMSSLLTSGPPPPIIVFVNKKKHCEIIMEIVQECGLSSTSLHSGRSQ 713

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IATDVA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG 
Sbjct: 714 EQREMALEGFKKRKYGVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGRTGRAGM 773

Query: 341 KGMSVFVIPQNM 352
           +G++  +I    
Sbjct: 774 EGLASSLITDKD 785


>gi|324106744|gb|ADX41681.2| vasa [Cynoglossus semilaevis]
          Length = 722

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 180/388 (46%), Gaps = 10/388 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S  GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 278 IMTFEEAALCDSLSKNVSRSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 337

Query: 59  ASTLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+        FS    P A+ +APTREL  Q+  E       T V   V  GGVS+ 
Sbjct: 338 LHQLMIGGASSSFFSELQEPKAIIVAPTRELINQIFLEARKFAYGTVVRPVVVYGGVSIR 397

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            +  DL  G +++ GTPGRL D I    + +S ++  VLDEAD MLD+GF  D+      
Sbjct: 398 HQVSDLNKGCNVLCGTPGRLMDMIERGKVGLSKVQYFVLDEADRMLDMGFEPDMRRLVAS 457

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   + V    
Sbjct: 458 PGMPSREGRQTLMFSATFPEEIQKLAADFLKPDYLFLAVGIVGGACSDVEQTFIEVGKFS 517

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++++  G +  IVF   +         L +      ++ G+  Q +R  AL   
Sbjct: 518 KREQLLDLVKTCGNERTIVFVEKKRQADFIATFLCQENVPTTSIHGDREQWQREQALADF 577

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +AT VAARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V     
Sbjct: 578 KYGKCPVLVATSVAARGLDIPDVQHVVNFDLPGSIDEYVHRIGRTGRCGNVGRAVSFFDT 637

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAI 378
           ++     R           E  P +E +
Sbjct: 638 DVDGHLSRPLISILSKAQQEVPPWLEQL 665


>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           niger CBS 513.88]
 gi|143359932|sp|A2QQA8|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
          Length = 1180

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 196/423 (46%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 559 LDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRP-LDN 617

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  DL+ GA I+V T
Sbjct: 618 MEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCT 677

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 678 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 737

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +  ++    +I     +     +          +     +
Sbjct: 738 FPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLGNLYSSDEN 797

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 798 EDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 857

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 858 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 917

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 918 LKQSGQKVPEP---------VQKLVD--AFLEKVKAGKEKASASGFGGKGLERLDQERDA 966

Query: 418 AGF 420
           A  
Sbjct: 967 ARM 969


>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
          Length = 1191

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 196/423 (46%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 570 LDVIDKLGYEKTTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRP-LDN 628

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  DL+ GA I+V T
Sbjct: 629 MEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCT 688

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 689 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 748

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +  ++    +I     +     +          +     +
Sbjct: 749 FPRNMEALARKTLTKPIEIVVGGKSVVAPEITQIVEVRNDDQKFVRLLELLGNLYSSDEN 808

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 809 EDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 868

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 869 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 928

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 929 LKQSGQKVPEP---------VQKLVD--AFLEKVKAGKEKASASGFGGKGLERLDQERDA 977

Query: 418 AGF 420
           A  
Sbjct: 978 ARM 980


>gi|289614196|emb|CBI58963.1| unnamed protein product [Sordaria macrospora]
          Length = 584

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 9/367 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     +  +  +
Sbjct: 54  RDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFLIPALEKINPKVSK 113

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA+Q  +  + L    G+ V V  GG  +  +   LQ+  HIV
Sbjct: 114 I------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIV 167

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D    +  ++S     ++DEAD++L   F   IE +L   PK R++++FSAT
Sbjct: 168 VGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHPKDRQVMLFSAT 227

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              ++   +         +N+  E             V    + + +  +        +I
Sbjct: 228 FPLSVKDFSDKNMTSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSKLQINQSI 286

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC++   V    K + E  +       +++QQ R+      R+G  R  + +D+  RGI
Sbjct: 287 IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGI 346

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R+    + 
Sbjct: 347 DIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEI- 405

Query: 369 WEPAPSV 375
            +P P +
Sbjct: 406 -QPIPQI 411


>gi|171693513|ref|XP_001911681.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946705|emb|CAP73508.1| unnamed protein product [Podospora anserina S mat+]
          Length = 694

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 190/387 (49%), Gaps = 21/387 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +  
Sbjct: 195 TFSHPPLDKHLLSNIELARYKIPTPVQKYSIPIVIGGRDLMACAQTGSGKTGGFLFPILH 254

Query: 61  TLLAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
               +     PA              P AL +APTREL  Q+  E      ++ V   V 
Sbjct: 255 QSFVQGPSPIPAQGGGGGGYRQRKAYPTALILAPTRELVSQIYDESRKFAYRSWVRPCVV 314

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   
Sbjct: 315 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQ 374

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I          +R+ LMFSAT    I  LA+++  D V +++        +I  +  
Sbjct: 375 IRRIVQGEDMPLTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVGRVGSTSENITQKVE 434

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V   D+ + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER 
Sbjct: 435 YVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERE 494

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R+G+  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++
Sbjct: 495 RALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 554

Query: 345 VFVIPQNMQ---RRAERLFREANVSVV 368
                +  +   R    L +EAN  V 
Sbjct: 555 TAFFNRGNRGVVRELLELLKEANQEVP 581


>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
          Length = 631

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 184/382 (48%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 195 IMTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 254

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 255 LQQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTG 314

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R+L  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF   +      
Sbjct: 315 YQIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGS 374

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       +D++   V V    
Sbjct: 375 PGMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFS 434

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 435 KREQLLDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADF 494

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V     
Sbjct: 495 RSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYDP 554

Query: 351 NMQRRAER----LFREANVSVV 368
               +  R    +  +A   V 
Sbjct: 555 EADGQLARPLVTILSKAQQEVP 576


>gi|298241052|ref|ZP_06964859.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
 gi|297554106|gb|EFH87970.1| DEAD/DEAH box helicase domain protein [Ktedonobacter racemifer DSM
           44963]
          Length = 562

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 162/586 (27%), Positives = 256/586 (43%), Gaps = 38/586 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++P        L+       T +Q   +   L  KDV+  + TGSGKT+A+ + L
Sbjct: 1   MPSFQDLPLQPATRAVLASMQITEQTPIQAEAIPALLAGKDVIGQSATGSGKTLAYAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L A+N R +      AL + PTRELAVQV   L    A   +  A+ +GG    ++ 
Sbjct: 61  IERL-AKNKRVA-----QALVLVPTRELAVQVNSVLSTFAAPRRLTTALLVGGRRYEKQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA I++GTPGR+ DH+    L +  ++  VLDEAD+MLD GF  +IE IL++SP+
Sbjct: 115 SALRYGAQIIIGTPGRIKDHLEQGNLVLRDIRICVLDEADQMLDSGFGPEIEQILETSPE 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+M +FSAT+   I  L + Y KD V+V I  E    S I+     V    +  A+  +
Sbjct: 175 DRQMALFSATMPTWIAKLQEKYLKDPVKVTITPEAGVQSTIEQIVYQVPRGKKVEALCTL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       +++F  T+  V R  + L+   F V    G+ SQ+ R + L   R G+ ++ 
Sbjct: 235 LASTQGDISLIFGRTKMGVERLGEQLSNLGFAVGTFHGDKSQRAREDVLMAFRRGQVQML 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  +  VI+ EL  + E   HR GRTGR GR G +V ++  +   +  R
Sbjct: 295 LATDVAARGLDIRGITQVINYELPDSDELFTHRIGRTGRMGRYGKAVTLLVPSDMSKWRR 354

Query: 359 LFREANVSVVWE------------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + R     V  +            P    E  +ERD++++L +      +  +E+   + 
Sbjct: 355 MSRSFGQPVAVQKMVLNDEAALARPMVMSEGKQERDSEQVLLEDDDTQVVTLNERPRRER 414

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              +        G     R       E +        D F D  R  +  G   + F  +
Sbjct: 415 SRFQETQ-----GAYTRKRPYERTRNEFSARKPERSTDTFADAERPARPRGRHTEVFVET 469

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK 526
                  G       R  +  +       RQ       +   TF + S D     +R   
Sbjct: 470 E------GQAHARTKRAEL-FIEPELSARRQE------RRAATFEKSSTDKTREYKRGTG 516

Query: 527 LDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
               +      G KP F  + +   K  +    +  R  R + +S+
Sbjct: 517 KPSSVGKGEGKGRKPAFSSFDTRSGKRTSGGASSDARRTRDRISSR 562


>gi|24374114|ref|NP_718157.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348604|gb|AAN55601.1|AE015698_9 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 475

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 186/370 (50%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E GY + T +Q   +   L  K+VL +AQTG+GKT +F L L     A+ 
Sbjct: 8   LHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR-FADA 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     ++ + PTRELA+QV + +        +      GGV    +++ L  G  
Sbjct: 67  PKIRPKR-VRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    +  +VLDEAD MLD+GF +DI  I++  P++R+ L+FS
Sbjct: 126 LLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    DA+ + I+ +N   + ID     V    +   + ++++ +    
Sbjct: 186 ATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKENNWAQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+    +AT V +R
Sbjct: 246 ALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  LE VI+ +L    ++ +HR GRTGRAG +G ++  + ++  R    + R     
Sbjct: 306 GIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIERRLGHI 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 IERKNIEGFE 375


>gi|302697571|ref|XP_003038464.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
 gi|300112161|gb|EFJ03562.1| hypothetical protein SCHCODRAFT_46575 [Schizophyllum commune H4-8]
          Length = 528

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 213/458 (46%), Gaps = 10/458 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + +     L++ G+  +T VQ   +   L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 19  ELSEPTMRGLTDMGFSTMTPVQAKSIPVLLAGKDVLGAARTGSGKTLAFLIPAIEML--H 76

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    + I PTRELA+Q+    + L A       + +GG +   E   LQ G 
Sbjct: 77  RLKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTYGIVMGGANRRAEMEKLQKGV 136

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH    KG    +LKA+V+DEAD +L++GF ++++ I+   P + R  M
Sbjct: 137 NLLIATPGRLLDHLQNSKGFVFRNLKALVIDEADRILEVGFEEEMKRIISILPNENRQSM 196

Query: 185 ----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                  T    +  ++      ++ V+        S +    V+     R   +   L+
Sbjct: 197 LFSATQTTKVQDLARISLRPGPVSIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLFTFLK 256

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      +  + + + 
Sbjct: 257 KHLKKKIIVFFSSCNSVKYHAELLNYIDTPVLDLHGKQKQQKRTNTFFEFINAESGILLC 316

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S+  +  +      R  
Sbjct: 317 TDVAARGLDIPRVDWIIQYDPPDDPRDYIHRVGRTARAGKVGKSLLFLLPSELGFL-RFL 375

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-A 418
           +E+ V +     P+ + A  +   +++LQ   FL     D  +      A +  +KI   
Sbjct: 376 KESKVPLNEYSFPANKIANVQSQLEKLLQKNYFLHQSAKDGYRSYLQAYASYSLKKIFDV 435

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
             L + + G      + P   V+  +   + ++  K  
Sbjct: 436 NALDLAKVGKAFGFTVPPRVNVNIGEGKGNATKKRKRA 473


>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
          Length = 781

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 191/382 (50%), Gaps = 13/382 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+ +     I   +    Y   T +Q+  +   L  +D++  AQTGSGKT AF + +
Sbjct: 183 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 242

Query: 59  ASTLLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+ +     R+S  + P  L +APTRELA+Q+  E +     T +   V  GG   H
Sbjct: 243 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 302

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R++Q G H++V TPGRL D I    +++   K +VLDEAD MLD+GF   I  I++ 
Sbjct: 303 SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 362

Query: 176 SPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           S       R+ LMFSAT    I  LA ++  + + + +         I    + +   ++
Sbjct: 363 SNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEK 422

Query: 232 DNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            N + NI          ++F  T+       + L    + V ++ G+ SQ ER  AL M 
Sbjct: 423 LNYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMF 482

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  + +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G +      
Sbjct: 483 RNGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFYVD 542

Query: 349 -PQNMQRRAERLFREANVSVVW 369
              N+      L +EAN  V  
Sbjct: 543 KNNNIAIDLVDLLKEANQIVPQ 564


>gi|307206923|gb|EFN84769.1| Putative ATP-dependent RNA helicase me31b [Harpegnathos saltator]
          Length = 435

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 57  FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSSKDILARAKNGTGKTGAYSIPVLEQ 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  + D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 117 VDPKKDVI------QALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRI 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +     N+ H K +VLDEAD++L   F+  ++ ++   P +R+
Sbjct: 171 YQKVQVIIATPGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +    + + +D   +N+  E             V    + + +  +   
Sbjct: 231 ILLYSATFPLTVKQFMEKHLRDPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + +  +    +  +++Q  R+      R G  R  +++
Sbjct: 290 LQITQSIIFCNSTQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSS 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 350 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQ 409

Query: 362 EANVSVVWEPAPSV 375
           E    +  +P P V
Sbjct: 410 ELGTEI--KPIPKV 421


>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
 gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
          Length = 472

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/424 (29%), Positives = 208/424 (49%), Gaps = 16/424 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +   + + EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPIL 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L +   V   V +GG+ +  +  
Sbjct: 112 QALMDKPSSF------FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSI 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 166 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   ++ +RV ++S   Q         + +    +D  +V 
Sbjct: 226 ERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+FC T     R +  L    F  + L G+LSQ  R  AL   R     +
Sbjct: 286 LLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G+++    Q       
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWL 405

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           R+       +   PA         E + E     IL+   + +      KK      ++ 
Sbjct: 406 RIEGALGKKLPEYPAEKDEVMVLAERVSEAQRSAILEMKNYDEKKGSRGKKFAKGKRSRE 465

Query: 412 DPEK 415
           D ++
Sbjct: 466 DMDQ 469


>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
 gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
           J2315]
          Length = 484

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 190/369 (51%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L    Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  EPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P KR+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I T+A    ++ V +++++ N   S I    V V   ++    ++++  +  ++A+
Sbjct: 189 FSDEIRTMAAGILRNPVDISVSAPNATASKIKQWVVTVDKRNKPGLFMHLVAQNKWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L +  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAVMLEKAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
          Length = 1211

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 196/423 (46%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY N TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 587 LDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRP-LEN 645

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 646 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 705

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 706 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 765

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +  ++    +I     +     +          +     +
Sbjct: 766 FPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDAN 825

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 826 EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 885

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 886 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 945

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 946 LRQSGQKVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 994

Query: 418 AGF 420
           A  
Sbjct: 995 ARM 997


>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
 gi|91207780|sp|Q2UNB7|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae]
          Length = 472

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/424 (29%), Positives = 208/424 (49%), Gaps = 16/424 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +   + + EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLIGLAETGSGKTAAFALPIL 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L +   V   V +GG+ +  +  
Sbjct: 112 QALMDKPSSF------FGLVLAPTRELAYQISQAFEGLGSTISVRSTVLVGGMDMVSQSI 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 166 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVLPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   ++ +RV ++S   Q         + +    +D  +V 
Sbjct: 226 ERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+FC T     R +  L    F  + L G+LSQ  R  AL   R     +
Sbjct: 286 LLNEFVGQSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLSQSARLGALGKFRSRSRDI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G+++    Q       
Sbjct: 346 LVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAWL 405

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           R+       +   PA         E + E     IL+   + +      KK      ++ 
Sbjct: 406 RIEGALGKKLPEYPAEKDEVMVLAERVSEAQRSAILEMKNYDEKKGSRGKKFAKGKRSRE 465

Query: 412 DPEK 415
           D ++
Sbjct: 466 DMDQ 469


>gi|77359091|ref|YP_338666.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874002|emb|CAI85223.1| ATP-dependent RNA helicase with nucleoside triP hydrolase domain,
           putative cold-shock protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 420

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+V+   L+E G+   T +Q   L      +D+   AQTG+GKT+AF  A 
Sbjct: 4   KKFSDFAIAPEVVA-GLTESGFEYCTPIQAKCLPFICEGRDIAGQAQTGTGKTLAFLTAT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +   +P+  P AL +APTRELA+Q+ ++ + L     + + +  GG    ++R
Sbjct: 63  CHRLLQSSK--APSKHPRALIMAPTRELAIQIHKDAKILAPHCNLNLGLVYGGEDYEKQR 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I++GT GRL D  +     ++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 121 AQLEKGVDILIGTTGRLIDLYKQGCYTLNEIEVVVLDEADRMFDLGFIKDIRYMFHRMPD 180

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + L   FSAT+S  +  LA  +  +   V I  + +    I       +  D+   ++
Sbjct: 181 TSKRLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKIKLLL 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AI+F +T+ S       L     +V  L+G+++Q++R + L     G   
Sbjct: 241 TLIEEEWPEKAIIFANTKHSCETVYAWLKADGHRVGMLTGDVNQKKRQSILAEFSKGDLD 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+ +P++  V + +L  + E+ +HR GRT RAG  G ++    +      
Sbjct: 301 FLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTARAGASGHAISFACEQYAYNL 360

Query: 357 ERLFREANVSVV 368
             +    + S+ 
Sbjct: 361 HEIEEYIDHSIP 372


>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|74672743|sp|Q4WT99|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
          Length = 1211

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 196/423 (46%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY N TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 587 LDVIQKLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRP-LEN 645

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 646 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 705

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 706 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 765

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +  ++    +I     +     +          +     +
Sbjct: 766 FPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDAN 825

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 826 EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 885

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 886 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 945

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 946 LRQSGQKVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 994

Query: 418 AGF 420
           A  
Sbjct: 995 ARM 997


>gi|302326490|gb|ADL25691.1| putative ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 483

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 213/384 (55%), Gaps = 7/384 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F+ +P+     L E G+  L  VQ   +   L  +D+LV ++TGSGKT A+ L L   +
Sbjct: 53  TFDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVI 112

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + ++        P AL + PTREL +QV  E E L   TG+      GGVS   + + L+
Sbjct: 113 VRDHP------YPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALR 166

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G H++V TPGRL DHI+   +++  ++ +VLDEADEML +GF  D++ I    PK    
Sbjct: 167 SGVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISC 226

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRY 241
            M+SATI   + +LA+ +Q+        S ++  ++  ++R     + ++D+  + +L Y
Sbjct: 227 TMYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEY 286

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  ++ ++FC+ +  VS   +VL+ + F+V ALSG+++Q  R   L   RD + ++ I T
Sbjct: 287 YNPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICT 346

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI  +  ++ E  +HRSGRT RAGR G+ + +I    +    +   
Sbjct: 347 DVAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITPVEEIDLRQTAV 406

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
           +  ++ +     + E I ++ ++R
Sbjct: 407 DFGINFIKMDPLTNEEIAKKVSER 430


>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 481

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 189/369 (51%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+ +   
Sbjct: 10  DPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQQGSA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I T+A +  +  V ++++  N   S I   AV V   ++ +  ++++  +   +A+
Sbjct: 189 FTDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWDHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|224128550|ref|XP_002329031.1| predicted protein [Populus trichocarpa]
 gi|118482674|gb|ABK93256.1| unknown [Populus trichocarpa]
 gi|222839702|gb|EEE78025.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/374 (31%), Positives = 189/374 (50%), Gaps = 9/374 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 39  FETFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 99  LQQLDY------GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 152

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 153 RILQAGVHVVVGTPGRVFDMLRRQSLRQDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPS 212

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + +
Sbjct: 213 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCD 272

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 273 LYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  +  R   
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLF 392

Query: 358 RLFREANVSVVWEP 371
            + +  NV V   P
Sbjct: 393 DIQKFYNVVVEELP 406


>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
 gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
          Length = 551

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 194/380 (51%), Gaps = 2/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+  +GY   + +QE  +   L  KDV+ +AQTG+GKT  F L +   LL++ 
Sbjct: 8   LSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPILE-LLSKG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +   AL + PTRELA QV   +        +  +V  GGV ++ + + L+ G+ 
Sbjct: 67  PRV-RQNQVRALVLTPTRELAAQVNGSVVKYGLNLPLTSSVVFGGVKINPQMQKLRKGSD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD MLD+GF  DI  IL   PKKR+ L+FS
Sbjct: 126 VLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LAK    + V ++++  N     ++     V    +   +  +++ +  + 
Sbjct: 186 ATFSDDIRSLAKGLVNNPVEISVSPANSTAKTVEQSIYPVDKKKKSPMLAKLIKDNDWRQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++  + L E       + G  SQ  R+ AL+  + G+ RV +ATD+AAR
Sbjct: 246 VLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKVRVLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L  V++ +L    E+ +HR GRTGRAG  G ++ ++  +       + R     
Sbjct: 306 GIDIPQLPQVVNFDLPHVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIERLIQQV 365

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +          + +    R+
Sbjct: 366 LERRELEGFSPVNKLPESRL 385


>gi|323508819|dbj|BAJ77303.1| cgd4_3180 [Cryptosporidium parvum]
 gi|323510507|dbj|BAJ78147.1| cgd4_3180 [Cryptosporidium parvum]
          Length = 441

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 197/385 (51%), Gaps = 9/385 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +  
Sbjct: 29  TFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQ 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +           A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   
Sbjct: 89  RLLDDQVPM------YAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLS 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V +PGRL DH+      NI  +K +V+DEAD +L + F   +  I++SSP+ 
Sbjct: 143 LAKKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRN 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L K    + +++ + ++    +++    + +    + +  + +L
Sbjct: 203 RTTYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGML 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    I+FC+T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+  
Sbjct: 263 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            T+V +RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+
Sbjct: 323 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
               N  +    +   E +    A+
Sbjct: 383 EFALNRKLDEYTSLQREEVMAIHAK 407


>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
           mobilis JLW8]
 gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
          Length = 459

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 136/366 (37%), Positives = 205/366 (56%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   +  AL+E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL   
Sbjct: 17  LAPELLRALTESGYTTPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFSLPLLQKLLPLA 76

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N+  SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L+ G
Sbjct: 77  NNSTSPAKHPVRALILTPTRELAIQVEESVKAYAKHTQLRSLVVYGGVDIKTQTPHLKTG 136

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K L ++ ++ +VLDEAD MLD+GF  D++ IL   PK+R+ LM
Sbjct: 137 VEVLVATPGRLLDHIEQKTLQLNQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQNLM 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA ++      + +A  N  + ++  +   VA SD++  ++ +LR   A
Sbjct: 197 FSATFSNEIKKLADDFLTKPQLIEVARSNATNDNVTQKVYQVAQSDKEALLIQLLREADA 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  IVF  T+ + SR ++ L        A+ G+ +QQER  AL   + G     IATDVA
Sbjct: 257 KQVIVFTKTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTVSALIATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L +VI+ E+ S PE+ +HR GRTGRAG  G+++  +  + ++    + +   
Sbjct: 317 ARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGVAISFVSDDEEKYLVEIEKLIK 376

Query: 365 VSVVWE 370
             +  E
Sbjct: 377 RQITKE 382


>gi|120537661|gb|AAI29276.1| Vasa protein [Danio rerio]
          Length = 688

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 182/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 248 IMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 307

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 308 LQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 367

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+GF  ++      
Sbjct: 368 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS 427

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  +++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 428 PGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYS 487

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 488 KRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 547

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V    P
Sbjct: 548 RLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNP 607

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 608 ESDTPLARSLVK 619


>gi|19482136|gb|AAL89410.1|AF461759_1 vasa-like protein [Danio rerio]
          Length = 715

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 182/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 275 IMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 334

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 335 LQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 394

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+GF  ++      
Sbjct: 395 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVAS 454

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S  +++ ++  +          A   + D + + +       SD++   V V    
Sbjct: 455 PGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYS 514

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 515 KRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 574

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ ++ S+ +  +HR GRTGR G  G +V    P
Sbjct: 575 RLGQCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFNP 634

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 635 ESDTPLARSLVK 646


>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
 gi|74897202|sp|Q54VT4|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
           Full=DEAD box protein 47
 gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
          Length = 546

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/417 (28%), Positives = 203/417 (48%), Gaps = 13/417 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +A ++ G+     +Q   +   L+ +D++  AQTGSGKT AF + +  
Sbjct: 120 TFESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQ 179

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL              LA+APTRELA Q+  +   + +  GV   V +GG+    +   
Sbjct: 180 KLLEAPQ------GLFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLA 233

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VVG+PGR+  H    KG N+  +K  ++DEAD +    F +++  IL   PK+
Sbjct: 234 LAKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKE 293

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + V+V +AS+ +    +  + + V    +D  +  IL
Sbjct: 294 RNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYIL 353

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F ST AS ++   +L    F  + ++G++ Q +R  +L   + G   + +
Sbjct: 354 NELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILV 413

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P ++LVI+ ++ +N +  +HR GRT RAG  G ++ ++ Q      +R+
Sbjct: 414 ATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRI 473

Query: 360 FREANVSVVWEP--APSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                  +   P    +V    ER  +A RI  + L   +      +         D
Sbjct: 474 EFVLKKKLDSFPCQEETVLIFLERVQEAHRIATNELKDKNYSSSSDRHSGDSEGSID 530


>gi|66357446|ref|XP_625901.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
 gi|46226956|gb|EAK87922.1| Rrp3p, eIF4A-1-family RNA SFII helicase (DEXDc+HELICc)
           [Cryptosporidium parvum Iowa II]
          Length = 446

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 197/385 (51%), Gaps = 9/385 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +  
Sbjct: 34  TFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +           A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   
Sbjct: 94  RLLDDQVPM------YAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLS 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V +PGRL DH+      NI  +K +V+DEAD +L + F   +  I++SSP+ 
Sbjct: 148 LAKKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPRN 207

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L K    + +++ + ++    +++    + +    + +  + +L
Sbjct: 208 RTTYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGML 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    I+FC+T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+  
Sbjct: 268 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            T+V +RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+
Sbjct: 328 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 387

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
               N  +    +   E +    A+
Sbjct: 388 EFALNRKLDEYTSLQREEVMAIHAK 412


>gi|268591855|ref|ZP_06126076.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
 gi|291312828|gb|EFE53281.1| ATP-independent RNA helicase DbpA [Providencia rettgeri DSM 1131]
          Length = 457

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/378 (34%), Positives = 197/378 (52%), Gaps = 11/378 (2%)

Query: 1   MKIFENIPQVIGE---ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++  +  E    L E GY+N+T +Q A L P L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFADLNALSAEQLTNLQELGYLNMTQIQAAALPPILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHID------AKLFKTQSLVLCPTRELADQVANELRRLARAIPNIKILTLCGGVPFSV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   + AHI+V TPGRL DH+  + + +  L+ +VLDEAD MLD+GF  DIE I+D +
Sbjct: 115 QRDSLAHAAHIIVATPGRLLDHLNRETVQLDALQTLVLDEADRMLDMGFMPDIETIIDYA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    I  +++  Q +   + I S +   +       +     +   + 
Sbjct: 175 PINRQTLLFSATWPEEIARISQQIQNNPQTIEINSVDELPAVEQQFYEVARHE-KIELLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L      V+ L G++ Q+ER   L    +G +R
Sbjct: 234 KLLSREQPASCVVFCNTKKDCQAVYDALTASKQSVLVLHGDMEQRERDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVASRGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    N+ + W+  P+
Sbjct: 354 NALEEMLNMKLNWQTEPT 371



 Score = 61.9 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +      + + +   
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWQTEP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
            G              L  G K K     ++  L    G+N   IG I + P   +V   
Sbjct: 371 TGLRVTPLEATMMTLCLDGGKKAKIRPGDILGALTGEVGLNGADIGKIVIHPTHAYVALK 430

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYL 536
            EV+      L++     K ++ + L
Sbjct: 431 REVAVQAWKHLQQGKIKGKSVKARLL 456


>gi|167753303|ref|ZP_02425430.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
 gi|167659234|gb|EDS03364.1| hypothetical protein ALIPUT_01576 [Alistipes putredinis DSM 17216]
          Length = 476

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 188/373 (50%), Gaps = 7/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + +    +  +T VQE  +   L  +D++  AQTG+GKT A+ L L + LL E
Sbjct: 7   DLEDEVLDGIDAMNFQEMTPVQEQTIPIILDGRDIIACAQTGTGKTAAYTLPLLNRLLLE 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQ 122
            +     +   ++ I PTRELA Q+  + +       V  AV      G    +++R LQ
Sbjct: 67  GNE---KNVVKSVIIVPTRELAQQIDMQFQGFSYYMPVSTAVIYGGGDGRGWDQQKRGLQ 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +V+ TPGRL  H+    +++SH+  ++LDEAD MLD+GF DDI  I+   PK R+ 
Sbjct: 124 MGADVVIATPGRLISHLMNSRVDLSHVDYLILDEADRMLDMGFYDDIMQIVSYMPKSRQT 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT+ P I  +AK    D   V   + ++ +  I+  A +     +   +  +  + 
Sbjct: 184 LMFSATLPPKIRQMAKQILNDPAEV-NIAISKPNEAIEQGAYICYEGQKLGIVREMFSWP 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F S++  V      L      V  +  +L Q++R   +   ++ + R+ +ATD
Sbjct: 243 SESKTIIFSSSKQKVKELAHTLKRMKLDVAPMHSDLDQEKREQVMLDFKNNKVRILVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+ D+ +VI+ ++  +PE+ +HR GRT RA   G +V  + +  Q +  R+   
Sbjct: 303 IVARGIDIEDIGMVINYDVPHDPEDYIHRIGRTARASATGRAVTFVNEEEQGKFHRIEEF 362

Query: 363 ANVSVVWEPAPSV 375
               +     P  
Sbjct: 363 IEREIPKLSLPEA 375


>gi|198470027|ref|XP_001355197.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
 gi|198147147|gb|EAL32254.2| GA19457 [Drosophila pseudoobscura pseudoobscura]
          Length = 1243

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 190/365 (52%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 549 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPNLDE 607

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V T
Sbjct: 608 GDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCT 667

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 668 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 727

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 728 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDESKFFKLLELLGIYQEAGSI 787

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 788 IVFADKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 847

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 848 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSG 907

Query: 368 VWEPA 372
              PA
Sbjct: 908 CLVPA 912


>gi|73954679|ref|XP_860431.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 4 [Canis familiaris]
          Length = 490

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 180/375 (48%), Gaps = 7/375 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSP-ASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERR 119
           L  + D         + + I PTRELA+QV +  ++      G  V    GG ++  +  
Sbjct: 158 LDLKKDNIQGYIIGKITMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 217

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK 
Sbjct: 218 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 277

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L++SAT   ++     ++ +    +N+  E             V    + + +  + 
Sbjct: 278 RQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLF 336

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  +
Sbjct: 337 SRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 396

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + +
Sbjct: 397 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSI 456

Query: 360 FREANVSVVWEPAPS 374
             +    +  +P PS
Sbjct: 457 EEQLGTEI--KPIPS 469


>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
          Length = 372

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 187/375 (49%), Gaps = 10/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L   +   
Sbjct: 2   NLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLR 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124
                      AL ++PTRELA Q+G+ ++ L     V   A+  G       ++  ++G
Sbjct: 62  KKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHG 115

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSPKKRRM 182
              V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    PK  ++
Sbjct: 116 CQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQV 175

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRY 241
           ++ SAT++  I  + + +  D V++ +  +      I      +     + + + +I   
Sbjct: 176 VVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDS 235

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +RV I+T
Sbjct: 236 LTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIST 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  I +    +   + +
Sbjct: 296 DVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIEK 355

Query: 362 EANVSVVWEPAPSVE 376
             ++ +   PA   E
Sbjct: 356 FYSIKINPMPANFAE 370


>gi|297678503|ref|XP_002817109.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Pongo
           abelii]
          Length = 648

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 190/396 (47%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L 
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIT 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|125556618|gb|EAZ02224.1| hypothetical protein OsI_24319 [Oryza sativa Indica Group]
          Length = 620

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 193/395 (48%), Gaps = 14/395 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I  AL  +G    T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 181 LPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEE 240

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELE------WLYAKTGVVVAVCIGGVSVHRER 118
                 P   P  L + P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 241 ILMPIVPGEGPFGLIVCPSRELARQTHEVIELFLAPLMEAGYPEIRPLLCIGGVDMRTQM 300

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 301 EVVKKGVHIVVATPGRLKDLLSKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKA 360

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     + VN+      + D+      V    R   ++  
Sbjct: 361 QRQTLLFSATMPEKIQNFAKSALVKPIIVNVGRAGAANLDVIQEVEYVKEEARIIYLLEC 420

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G    +ER +A +  +     V 
Sbjct: 421 LQKTPPP-VLVFCEHKADVDYIQEFLLLKGVEAVAIHGGKDDEERKDAFKSFKASEKDVL 479

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D+PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N  +    
Sbjct: 480 VATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVATTFINKNQTQTTLL 539

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             ++L  E+   +       ++  +E D   I Q 
Sbjct: 540 DLKQLLIESKQRLPPI-LADLDDPQEDDKVAIAQQ 573


>gi|312373386|gb|EFR21141.1| hypothetical protein AND_17503 [Anopheles darlingi]
          Length = 615

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 8/377 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +    + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +
Sbjct: 90  VTSFAHFGFDESLMKAIRKSEYSQPTPIQAQAIPAALGGRDIIGIAKTGSGKTAAFLWPM 149

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ + +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + 
Sbjct: 150 LVHIMDQRE-LGPGDGPIGLILAPTRELSLQIYGEAKKFGKVYNISVCCCYGGGSKWEQS 208

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA IVV TPGR+ D ++ K  N+  +  +VLDEAD+M ++GF   +  I +    
Sbjct: 209 KALEQGAEIVVATPGRMIDMVKMKATNLRRVTYLVLDEADKMFNMGFEPQVRSICNHIRP 268

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    +  LA++   D VR+        ++D+  R VL+         +  
Sbjct: 269 DRQTLLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANADVAQRVVLLPNVQAKWNWLLA 328

Query: 239 LRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + ++F + +A   +    L     +VV L G++ Q ER++ +   +     
Sbjct: 329 NLVQMLSEGSVLIFVTKKADAEQVANSLRVKENEVVLLHGDMDQSERNSVITRFKRREVD 388

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  +I    +  +
Sbjct: 389 MMVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKEFS 448

Query: 357 ERLFRE---ANVSVVWE 370
             L R    AN  V  E
Sbjct: 449 GHLVRNLEGANQEVPEE 465


>gi|297824215|ref|XP_002879990.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297325829|gb|EFH56249.1| hypothetical protein ARALYDRAFT_483345 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 627

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 196/388 (50%), Gaps = 20/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 156 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 215

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 216 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 275

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 276 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 335

Query: 175 SSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                 R +     FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 336 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSD 395

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 396 KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQER 455

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 456 EVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 515

Query: 344 SVFVIPQ---NMQRRAERLFREANVSVV 368
           +         ++ R    L +EAN  V 
Sbjct: 516 ATAFFNDGNTSLARPLAELMQEANQEVP 543


>gi|148693657|gb|EDL25604.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_a [Mus
           musculus]
          Length = 485

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/401 (24%), Positives = 187/401 (46%), Gaps = 19/401 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 100 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 159

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 160 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 213

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 214 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 273

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 274 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 332

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 333 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 392

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 393 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 452

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +    +  +P PS       +  + L    +      DEK
Sbjct: 453 EQLGTEI--KPIPS-------NIDKSLYVAEYHSEPAEDEK 484


>gi|157817692|ref|NP_001102762.1| hypothetical protein LOC500988 [Rattus norvegicus]
 gi|149041488|gb|EDL95329.1| rCG58047 [Rattus norvegicus]
          Length = 483

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/401 (24%), Positives = 187/401 (46%), Gaps = 19/401 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +    +  +P PS       +  + L    +      DEK
Sbjct: 451 EQLGTEI--KPIPS-------NIDKSLYVAEYHSEPAEDEK 482


>gi|147902730|ref|NP_001084200.1| eukaryotic initiation factor 4A-III-B [Xenopus laevis]
 gi|82189798|sp|O42226|I4A3B_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-B;
           Short=XeIF-4AIII; Short=eIF-4A-III-B; Short=eIF4A-III-B;
           AltName: Full=ATP-dependent RNA helicase DDX48-B;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3-B;
           AltName: Full=DEAD box protein 48-B; AltName:
           Full=Eukaryotic translation initiation factor 4A isoform
           3-B
 gi|2443810|gb|AAB71410.1| eukaryotic translation initiation factor XeIF-4AIII [Xenopus
           laevis]
          Length = 414

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 42  TFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APT+ELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 102 CLDIQ------IRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 155

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 156 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 215

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 216 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 275

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 276 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 335

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 336 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 395

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 396 EQYYSTQIDEMPMNVADLI 414


>gi|6681159|ref|NP_031867.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016793|ref|NP_851841.2| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|161016795|ref|NP_001104296.1| probable ATP-dependent RNA helicase DDX6 [Mus musculus]
 gi|1709532|sp|P54823|DDX6_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK homolog
 gi|940408|dbj|BAA09088.1| RCK [Mus musculus]
 gi|18203917|gb|AAH21452.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Mus musculus]
 gi|74138164|dbj|BAE28578.1| unnamed protein product [Mus musculus]
 gi|148693659|gb|EDL25606.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_c [Mus
           musculus]
          Length = 483

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/401 (24%), Positives = 187/401 (46%), Gaps = 19/401 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +    +  +P PS       +  + L    +      DEK
Sbjct: 451 EQLGTEI--KPIPS-------NIDKSLYVAEYHSEPAEDEK 482


>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
           mellifera]
          Length = 626

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 187/372 (50%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE  P+++ E + ++ +V  + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 219 FEIYPEILDE-IRKQKFVKPSPIQSQAWPILLSGRDLIGIAQTGTGKTLAFLLPALIHIE 277

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L +APTRELA+Q+ +E+   Y+  G+      GG S  ++   +  
Sbjct: 278 GQQIPRVERKGPNVLIMAPTRELALQIEKEVNK-YSYHGIKAVCLYGGGSRKKQVNVVTE 336

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D +  K LNIS +  +VLDEAD MLD+GF   I   L      R+ +
Sbjct: 337 GVEIVIATPGRLNDLVEAKILNISSITYLVLDEADRMLDMGFEPQIRKTLLDIRPDRQTV 396

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y K+ ++V + S +      +  +  +V   ++ + +    R  
Sbjct: 397 MTSATWPQGVRRLAQSYMKNPIQVFVGSLDLATVHTVMQKVYIVDEEEKTDMMYEFFRKM 456

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F   +  V      LA       ++ G   Q +R  AL+ ++ G  ++ +AT
Sbjct: 457 SPNDKVIIFFGKKTKVDDVASDLALQSVNCQSIHGGREQSDREQALEDLKTGEVQILLAT 516

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           DVA+RGID+ D+  V++ +   + E  +HR GRTGRAGR G S+  + +     A+    
Sbjct: 517 DVASRGIDIEDITHVLNYDFPRDIEEYVHRVGRTGRAGRSGESITFMTRKDWTHAKDLIN 576

Query: 359 LFREANVSVVWE 370
           +  EAN  V  E
Sbjct: 577 ILEEANQEVPEE 588


>gi|157117281|ref|XP_001653010.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108883352|gb|EAT47577.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 799

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 185/377 (49%), Gaps = 8/377 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +    + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +
Sbjct: 278 VTSFAHFGFDEQLMKAIRKSEYTQPTPIQAQGVPAALSGRDIIGIAKTGSGKTAAFLWPM 337

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ + +   P   P+ L +APTREL++Q+ +E +       + V  C GG S   + 
Sbjct: 338 LVHIMDQKE-LGPGDGPIGLILAPTRELSLQIYQEAKKFGKIYNISVCCCYGGGSKWEQS 396

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA IVV TPGR+ D ++ K  N+  +  +VLDEAD+M +LGF   +  I +    
Sbjct: 397 KALEQGAEIVVATPGRMIDMVKMKATNLQRVTYLVLDEADKMFNLGFEPQVRSICNHVRP 456

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I  LA++   D VR+        + DI    +++         +  
Sbjct: 457 DRQTMLFSATFKKRIERLARDVLTDPVRIMHGDLGEANEDITQHVIVMNNPAHKWNWLLA 516

Query: 239 LRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      ++F + +A   +    L    +  V L G++ Q +R+  +   R     
Sbjct: 517 KMVELLSEGTVLIFVTKKADAEQVANNLRLKEYDPVLLHGDMDQADRNIVITRFRKREVE 576

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG +  ++    +  A
Sbjct: 577 IMVATDVAARGLDIPHIKNVINYDIARDIDTHTHRVGRTGRAGEKGTAYTLVVDKDKEFA 636

Query: 357 ERLFRE---ANVSVVWE 370
             L R    AN  V  E
Sbjct: 637 GHLVRNLEGANQEVPEE 653


>gi|39104462|dbj|BAD04052.1| vasa homologue [Leucopsarion petersii]
          Length = 645

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 187/385 (48%), Gaps = 13/385 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 209 IMSFEEAALCESLKKNVSKSGYVKPTPVQKHGVPIISAGRDLMACAQTGSGKTAAFLLPI 268

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     +FS    P AL +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 269 LQHLMADGVAASQFSELQEPEALIVAPTRELINQIHLEARKFAYGTCVRPVVVYGGVSTG 328

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + RDL  G +I+ GTPGRL D I    + ++ L+  VLDEAD MLD+GF  D+  ++ S
Sbjct: 329 HQIRDLCRGCNILCGTPGRLLDVINRGKVGLTKLRYFVLDEADRMLDMGFEPDMRRLVGS 388

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSD 230
                +    +   S       +    D ++ +             +D++   V V   D
Sbjct: 389 PGMPTKEDRQTLMFSATYPEDIQKLAADFLKTDYLFLAVGIVGGACTDVNQEFVEVTKFD 448

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +L+  G    +VF  T+         L +      ++ G   Q+ER  AL   
Sbjct: 449 KREKLLELLKTTGTDRTMVFVETKRLADFIAAFLCQEKVPTTSIHGGREQREREQALGDF 508

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+PD++ V++ +L +N +  +HR GRTGR G  G +V    P
Sbjct: 509 RSGKCPVLVATSVAARGLDIPDVQNVVNFDLPNNIDEYVHRIGRTGRCGNLGRAVSFFDP 568

Query: 350 QNMQRRAERLFREANVSVVWEPAPS 374
            N  + A  L   + +S   +  PS
Sbjct: 569 DNDSQLARPLI--SILSKAQQEVPS 591


>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
 gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
          Length = 411

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 175/365 (47%), Gaps = 3/365 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +  A+ E GY   T +Q   +   L  +DVL SA TG+GKT AF L     L  +
Sbjct: 9   ELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALPALQFL-QD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A   L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPA-RVLILTPTRELAMQVADQARALAKHTNLNIFTITGGVQYQEHADILATTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+F
Sbjct: 127 DIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQTLLF 186

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT     +     +  KD   ++     R+   I               ++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMTHKLELLKKILTEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + +IVF  TR  ++     L +       + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 ERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++  + Q   +R+ R   
Sbjct: 307 ARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMIDRVARYVK 366

Query: 365 VSVVW 369
             +  
Sbjct: 367 EDIKE 371


>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
 gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Drosophila simulans]
 gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
           wRi]
          Length = 402

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 203/396 (51%), Gaps = 12/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL +      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + LL E 
Sbjct: 3   LPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLLNEP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  S      AL I PTRELA QV  E+  L    + + VA+ IGG  + R+   LQ   
Sbjct: 63  NTGS------ALVIVPTRELAHQVTNEIRKLLSQNSALRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIVIGTPGRIIDHIERKTLITRNVSVLVLDETDRMFDMGFGVQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA+ Y     R+++  E      I    V  + S++   +V  L      
Sbjct: 177 SATLPGDIVKLAEKYLNRPERISVDCEVTTSVKIKQEIVYASESEKYEKLVTQLCQREGS 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 237 III-FVKTKRGADQLAHRLHKDDYSALAIHGDLRQHKRERVINSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P ++ VI+ +   +  + +HR GRT RAG +G ++  +    +RR   L  +   
Sbjct: 296 RGLDIPHIQHVINYDAPQSQADYIHRIGRTARAGAEGYALSFVTPQDKRRLPVLADKEG- 354

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
                        ++R+++++ + P  L +  G +K
Sbjct: 355 ---ELNFDCSVQFKKRNSKKVFKRPSTLKTKYGRKK 387


>gi|304408600|ref|ZP_07390221.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307305428|ref|ZP_07585176.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352421|gb|EFM16818.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306911731|gb|EFN42156.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 467

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 185/366 (50%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+ 
Sbjct: 8   LSDPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADM 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKI-RAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + 
Sbjct: 186 ATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    + R  +  
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLDHI 365

Query: 367 VVWEPA 372
           +V +  
Sbjct: 366 IVRKEI 371


>gi|294139293|ref|YP_003555271.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
 gi|293325762|dbj|BAJ00493.1| ATP-dependent RNA helicase DbpA [Shewanella violacea DSS12]
          Length = 469

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 200/368 (54%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L   GY ++T++Q   L   L  +DV+   +TGSGKT AFGL L   L  + 
Sbjct: 19  LKPELIENLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 79  FRI------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    LN+ ++  +VLDEAD ML++GF  D+++I+   P++R+ L+F
Sbjct: 133 HIIVGTPGRIIDHLSRDLLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+      V V +AS +  ++   +   + +  DR  A+  +L  H   
Sbjct: 193 SATFPKQIQKVAEQIMFKPVMVKVASTHDSNTIDQHFYQIDSNKDRQKALRLLLLQHRPD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 253 SAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++VI+ E + + E  +HR GRTGRAG KG +      +   + + L      
Sbjct: 313 RGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGTAFTFYTLDDDYKIKLLEEYLER 372

Query: 366 SVVWEPAP 373
            +V E  P
Sbjct: 373 DIVSEGLP 380



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L    GI    +G I++    ++V V           +
Sbjct: 394 MVTLQIEGGKKNKVRPGDILGALTGEDGIKGSEVGKIKITEFRSYVAVDRKAAKRALHKI 453

Query: 526 KLDK 529
              K
Sbjct: 454 VNGK 457


>gi|261414880|ref|YP_003248563.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371336|gb|ACX74081.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 463

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 213/384 (55%), Gaps = 7/384 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F+ +P+     L E G+  L  VQ   +   L  +D+LV ++TGSGKT A+ L L   +
Sbjct: 33  TFDMLPEEQKAILREHGWTELMPVQRKSIPYMLAARDMLVQSKTGSGKTGAYALPLLQVI 92

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           + ++        P AL + PTREL +QV  E E L   TG+      GGVS   + + L+
Sbjct: 93  VRDHP------YPQALILVPTRELCIQVQEEFEKLSKGTGIKSVAIFGGVSYEPQIKALR 146

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G H++V TPGRL DHI+   +++  ++ +VLDEADEML +GF  D++ I    PK    
Sbjct: 147 SGVHVIVATPGRLMDHIQRGNVDLLSIRDLVLDEADEMLSMGFYPDMQKIRKYLPKAISC 206

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRY 241
            M+SATI   + +LA+ +Q+        S ++  ++  ++R     + ++D+  + +L Y
Sbjct: 207 TMYSATIPQTVKSLAREFQRPGADFLSLSYDKVIANNLEHRYYTCDVMEKDSMTIKVLEY 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  ++ ++FC+ +  VS   +VL+ + F+V ALSG+++Q  R   L   RD + ++ I T
Sbjct: 267 YNPESCMIFCNYKRDVSYLEQVLSGYGFEVGALSGDVAQSLREKTLNAFRDKKLKILICT 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI  +  ++ E  +HRSGRT RAGR G+ + +I    +    +   
Sbjct: 327 DVAARGIDVDHVTHVIVYDHPADHEVYVHRSGRTARAGRSGLCISLITPVEEIDLRQTAV 386

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
           +  ++ +     + E I ++ ++R
Sbjct: 387 DFGINFIKMDPLTNEEIAKKVSER 410


>gi|238506126|ref|XP_002384265.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
 gi|220690379|gb|EED46729.1| DEAD-box RNA helicase Dhh1/Vad1, putative [Aspergillus flavus
           NRRL3357]
          Length = 453

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/358 (25%), Positives = 165/358 (46%), Gaps = 7/358 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     +  ++ +     
Sbjct: 3   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTK----- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q     + L    G+ V V  GG  +  +   L +  HI+VGTPG
Sbjct: 58  -TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D       ++S     V+DEAD++L   F   IE +L   PK R++++FSAT    +
Sbjct: 117 RVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPLIV 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +    + ++   +N+  E             V    + + +  +        +I+FC++
Sbjct: 177 KSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNS 235

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +        + QQ R+      R+G  R  + +D+  RGID+  +
Sbjct: 236 TNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 295

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +E    +   P
Sbjct: 296 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIP 353


>gi|224073500|ref|XP_002304104.1| predicted protein [Populus trichocarpa]
 gi|118484805|gb|ABK94270.1| unknown [Populus trichocarpa]
 gi|222841536|gb|EEE79083.1| predicted protein [Populus trichocarpa]
          Length = 413

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 9/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  
Sbjct: 41  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R 
Sbjct: 101 QLDY------GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K 
Sbjct: 155 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKV 214

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 215 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLY 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++  R    +
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDI 394

Query: 360 FREANVSVVWEP 371
            +  NV +   P
Sbjct: 395 QKFYNVVIEELP 406


>gi|24374643|ref|NP_718686.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349273|gb|AAN56130.1|AE015749_7 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 427

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 121/382 (31%), Positives = 194/382 (50%), Gaps = 4/382 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +G  L+E GYV+ T VQ A +   L  +DVL  A TGSGKT AF L L   L       
Sbjct: 19  PLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSAD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHI 127
             A     L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    L ++ + A VLDEAD ML LGF +++E +L + P++++ L+FSA
Sbjct: 139 LVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +  ++ SE       + R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRALTTKLLHQPLEYHLQSEQESTI--EQRVITVNREQKTALLAHLIKQHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
           V E  P  EA  E   + + Q+
Sbjct: 377 VREQIPGFEANAEIPLEVLAQE 398


>gi|84499824|ref|ZP_00998112.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
 gi|84392968|gb|EAQ05179.1| DEAD/DEAH box helicase [Oceanicola batsensis HTCC2597]
          Length = 451

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/362 (33%), Positives = 188/362 (51%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L+E G    T +Q   +   +  +D+L  AQTG+GKT AFGL L + +  E 
Sbjct: 8   LLPCITENLAELGLTRPTPIQTKAIPHAMEGRDILGLAQTGTGKTAAFGLPLLTAIAREQ 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P +    L +APTRELA Q+   L+     T + V + +GG S++ +   L  G  
Sbjct: 68  GKPEPKT-VRGLVLAPTRELAKQIVENLQAYAKGTHMRVGLVVGGASINAQVNRLARGTD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  + + +S  + +VLDEAD+MLDLGF   +  I    P+ R+ ++FS
Sbjct: 127 VLVATPGRLIDLLDRRAVTLSQTRFLVLDEADQMLDLGFIHALRRIATLLPQTRQTMLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y  D VRV  A   +    I+     +A  ++   ++  L  H A  
Sbjct: 187 ATMPKLMAEIAGSYLTDPVRVETAPPGKPADKIEQSVHFIAQGEKTALLIEHLDAHRADP 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    R  K L    +  VA+ G  SQ +R  A++  R+G A V +ATDVAAR
Sbjct: 247 AIVFARTKHGSERLMKNLLAAGYAAVAVHGNKSQGQRDRAIREFREGEAMVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P +  V + +L +  +N +HR GRT RAGR G ++             + +     
Sbjct: 307 GIDIPGIRYVYNYDLPNVADNYVHRIGRTARAGRDGTAIAYCAPAEMGELRDIQKLLGKE 366

Query: 367 VV 368
           + 
Sbjct: 367 LP 368


>gi|170701192|ref|ZP_02892163.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133898|gb|EDT02255.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 542

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 1/368 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L +  Y   T VQ   +   L  KDV+  AQTG+GKT  F L L   L+      
Sbjct: 72  PLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQRLVQHGPVV 131

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++V
Sbjct: 132 SSNRA-RVLVLVPTRELAEQVLQSFVAYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVLV 190

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT 
Sbjct: 191 ATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPVQRQTLLFSATF 250

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  I T+A +  +  V ++++  N   S I   AV V   ++ +  ++++  +   +A+V
Sbjct: 251 TDDIRTMAASILRSPVNISVSPPNVTASKIKQWAVTVDKRNKPDLFMHLVAENNWDHALV 310

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+D
Sbjct: 311 FVKTRNGVEYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGLD 370

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++  
Sbjct: 371 IDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGQTLRR 430

Query: 370 EPAPSVEA 377
           E  P  EA
Sbjct: 431 EEEPGFEA 438


>gi|146100408|ref|XP_001468856.1| ATP-dependent DEAD-box RNA helicase [Leishmania infantum]
 gi|134073225|emb|CAM71946.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania infantum
           JPCM5]
          Length = 405

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +   
Sbjct: 32  FEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEK 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L     G+ V V  GG ++  +   
Sbjct: 92  VD------TRESYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILR 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  HI+V TPGR+ D    K +++SH   +VLDEAD++L   F + I+ +    P + 
Sbjct: 146 LTSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQL 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    + T A+ +  +   +N+  E             V    + + +  +  
Sbjct: 206 QSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGV-TQYYAFVEERQKIHCLNTLFN 264

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  + 
Sbjct: 265 KLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 324

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+ 
Sbjct: 325 SDLITRGIDIQAVNVVINFDFPKYSETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIE 384

Query: 361 REANVSVVWEPA 372
           +E +  +   PA
Sbjct: 385 QELDTEIKPIPA 396


>gi|297610744|ref|NP_001065000.2| Os10g0503700 [Oryza sativa Japonica Group]
 gi|255679537|dbj|BAF26914.2| Os10g0503700 [Oryza sativa Japonica Group]
          Length = 521

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 169/375 (45%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     
Sbjct: 149 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E       +A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L
Sbjct: 209 IDPEK------NAIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRL 262

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  R     +     +V+DEAD++L   F+  IE ++   P  R+
Sbjct: 263 YQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQ 322

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +    + Y      +N+  E             V    + + +  +   
Sbjct: 323 LLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFLK 381

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 382 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGI +  + +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 442 DLFTRGIGIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 501

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P ++
Sbjct: 502 ELGTEIKTIP-PQID 515


>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
 gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
          Length = 771

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 142/496 (28%), Positives = 237/496 (47%), Gaps = 25/496 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I +AL+  G+   T +Q A +   L  KDV+ +A TGSGKT AF + +   LL  
Sbjct: 185 NLSRPILKALTTLGFTKPTPIQAATIPVALLGKDVVGNAVTGSGKTAAFTIPMLERLLY- 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ     + L A T + VA+ +GG+S+  +   L+   
Sbjct: 244 REKGKKAAATRCLVLVPTRELAVQCYEVGKKLAAHTDIEVALIVGGLSLKSQEATLRARP 303

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI       + +L  +VLDEAD ML  GF D++  I+ + PK R+ ++
Sbjct: 304 DIVIATPGRLIDHIHNSPSFTLDNLDVLVLDEADRMLSDGFADELTEIIKACPKSRQTML 363

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ +  +      +    V V      +R   +V +   
Sbjct: 364 FSATMTDSVDELVRMSLDKPVRLFVDPKRSTAKGLIQEFVRVRAGREKERSPLLVALCTR 423

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  ++    +   V      +   L G+LSQ++R NALQ  RDG     +AT
Sbjct: 424 TFKTRVIIFVRSKKLAHQLRIVFGLVGLKCGELHGDLSQEQRLNALQQFRDGTVDYLMAT 483

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ ++       LHR GRT RAG+KG SV ++ +  ++  +   +
Sbjct: 484 DLASRGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLKAAIK 543

Query: 362 EAN-----------VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +              VV +    +E +++  ++ + ++       Q + +      + +
Sbjct: 544 HSTGQDQIRHRTVPPEVVAKWTEKLEGLKDEISEILKEEKEEKQIQQAEMELRKGQNMIE 603

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR--DRFRDDSRAFKVGGGSRDNFKGSSW 468
           H+ E     F R  R      +E      VS    +   D ++A K   G+ +       
Sbjct: 604 HEKE----IFSRPARTWFQTGKEKASAEAVSKEQYENGLDMAKAPKSKKGADEPKPKRDK 659

Query: 469 FSLSVGSKQKAEARWL 484
           FS   G  +KA+ R L
Sbjct: 660 FS---GLSRKAKRRKL 672


>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
 gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 412

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 198/385 (51%), Gaps = 8/385 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE   +   +  A+++ GY   TS+Q+ ++   +  KD+L SA TG+GKT AF L +  
Sbjct: 1   MFEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R     +   L + PTRELA QV  +   L   T +V  V  GG++   +R  
Sbjct: 61  FLLDYPRRH--PGSTRILILTPTRELAQQVYNQALELSRYTDIVCGVITGGINYGTDRDT 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +    I+V TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  ++
Sbjct: 119 FEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLDMGFSSIVNQISAEARWRK 178

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT     I+  AK+   D V +  AS  ++   I     +   +    A++  +
Sbjct: 179 QSMLFSATLEGTGISRFAKDILNDPVELEAASSRKEQGKIHQWLHIADDAKHKYALLKHI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H  ++A+VF  TR  ++   ++L    F V  L GE+ Q +R+ ++   R G  ++ I
Sbjct: 239 LTHQVESAVVFVKTRDRLNELKQILERDGFTVCWLQGEMPQDKRNLSMAKFRSGEVKILI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ ++    +  +HR GRTGRAG KG ++ ++  +      ++
Sbjct: 299 ATDVAARGIDVESISHVINYDMPRTADVYVHRIGRTGRAGNKGTAISLVEAHDIGIVPKI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       ++ +R ++ +
Sbjct: 359 ERYTEQPLKRRV---IDELRPKNKE 380


>gi|99080768|ref|YP_612922.1| DEAD/DEAH box helicase-like [Ruegeria sp. TM1040]
 gi|99037048|gb|ABF63660.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TM1040]
          Length = 445

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 9/385 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++P+ +   +   G+   T +Q   +   L  +DVL  AQTG+GKT AFG+ L
Sbjct: 1   MTEFSSMDLPKHLHTRMEAMGFNTPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +L    + + A     L +APTRELA Q+   L  L   + +   + +GGVS++ + 
Sbjct: 61  VAQMLEYGRKPA-AGTVRGLILAPTRELANQIAETLRGLTEGSPLKTGLVVGGVSINPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+V TPGRL D +  K L++     +VLDEAD+MLDLGF   +  I    P+
Sbjct: 120 HRLSKGTDILVATPGRLLDILDRKALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ ++FSAT+   +  +A  Y K  VR+ +    +  + +      +A +++ + +  +
Sbjct: 180 ERQTMLFSATMPKQMNEIANAYLKSPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  +  +VF  T+  + +  KVL +  F+  A+ G  SQ +R  AL+  + G   V 
Sbjct: 240 LSAHDGERTLVFGRTKHGMEKLMKVLDKAGFKAAAIHGNKSQGQRERALKAFKSGEITVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + 
Sbjct: 300 VATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEIGDLKA 359

Query: 359 LFREANVSVV------WEPAPSVEA 377
           + +   +++       WE  P   A
Sbjct: 360 IQKTMGITIPVASGRAWEELPDPAA 384


>gi|313231677|emb|CBY08790.1| unnamed protein product [Oikopleura dioica]
          Length = 863

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 183/369 (49%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+++ T +Q   +   L  +DV+  AQTGSGKT  F   +   +  + 
Sbjct: 236 FPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYHVTKQR 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P+AL +APTREL  Q+  E+           V +C GGV+++ + ++L+ G 
Sbjct: 296 P-LKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSFRVGICFGGVNMYEQGKELKMGV 354

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH++     +S    + LDEAD ML+LGF   +  I +     ++ L F
Sbjct: 355 EILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLFF 414

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA     D V++      + + ++     ++    +   ++N +    + 
Sbjct: 415 SATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQTFKILGQDQKLQWLLNNIVQLNSV 474

Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            ++ VF + +A      + L +  ++   + G++ Q ER++ ++  +  +    IATDVA
Sbjct: 475 GSLLVFVTRKADCVTVHEELKKSGYKTGVIHGDMHQAERNDVIKAFKKQQLATLIATDVA 534

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++ VI+ + + N +  +HR GRT RAG  G ++ ++       A  + R  +
Sbjct: 535 ARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAGIVLR--S 592

Query: 365 VSVVWEPAP 373
           +    +P P
Sbjct: 593 IETTKQPVP 601


>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
          Length = 383

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 200/385 (51%), Gaps = 9/385 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ EA  + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + + LL    R
Sbjct: 4   DVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQR 63

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV  AV +GG+    +   L    HI+
Sbjct: 64  ------LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII 117

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+ R+  +FSA
Sbjct: 118 IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 177

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+  ++S+ +    +    + +    +D  +V IL      + 
Sbjct: 178 TMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSF 237

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + +ATDVA+RG
Sbjct: 238 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRG 297

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+       +
Sbjct: 298 LDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 357

Query: 368 VWEPAPSVEAIRERDAQRILQDPLF 392
                P+ E       +R+ +   F
Sbjct: 358 P--VFPTQEDEVMMLTERVTEAQRF 380


>gi|23501930|ref|NP_698057.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
 gi|23347874|gb|AAN29972.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
           1330]
          Length = 535

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 193/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +    +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMCDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|162460883|ref|NP_001105372.1| eukaryotic initiation factor 4A [Zea mays]
 gi|2500522|sp|Q41741|IF4A_MAIZE RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
 gi|603190|gb|AAA82736.1| translation initiation factor eIF-4A [Zea mays]
          Length = 410

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 119/374 (31%), Positives = 194/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 37  ESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 96

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 97  QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 150

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 151 ILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 211 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDL 270

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 271 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 330

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 331 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFD 390

Query: 359 LFREANVSVVWEPA 372
           + R  NV+V   PA
Sbjct: 391 VQRFYNVTVEELPA 404


>gi|260581720|ref|ZP_05849517.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
 gi|260095313|gb|EEW79204.1| superfamily II DNA and RNA helicase [Haemophilus influenzae NT127]
          Length = 415

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 11/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ +AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL  
Sbjct: 15  SLHPIVRDALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTH 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G 
Sbjct: 75  QDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRML 183
            I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ R  +
Sbjct: 135 DILIGTTGRVIDYVKQGVIALDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQARLTM 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++    
Sbjct: 195 LFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEW 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDV
Sbjct: 255 PERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDILVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +    
Sbjct: 315 AARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYI 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + + + +L+ P
Sbjct: 375 GHSIP---------VSQYETEALLELP 392


>gi|20149756|ref|NP_619610.1| eukaryotic initiation factor 4A-III [Mus musculus]
 gi|42560197|sp|Q91VC3|IF4A3_MOUSE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|14198152|gb|AAH08132.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|15277517|gb|AAH12862.1| Eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|74138617|dbj|BAE27130.1| unnamed protein product [Mus musculus]
 gi|74142343|dbj|BAE31931.1| unnamed protein product [Mus musculus]
 gi|74146845|dbj|BAE41387.1| unnamed protein product [Mus musculus]
 gi|74186129|dbj|BAE34233.1| unnamed protein product [Mus musculus]
 gi|74188979|dbj|BAE39256.1| unnamed protein product [Mus musculus]
 gi|74212198|dbj|BAE40258.1| unnamed protein product [Mus musculus]
 gi|74214032|dbj|BAE29433.1| unnamed protein product [Mus musculus]
 gi|74220630|dbj|BAE31525.1| unnamed protein product [Mus musculus]
 gi|122889626|emb|CAM14996.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|123264877|emb|CAM18884.1| eukaryotic translation initiation factor 4A, isoform 3 [Mus
           musculus]
 gi|148702746|gb|EDL34693.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 48 [Mus musculus]
          Length = 411

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|255081756|ref|XP_002508100.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226523376|gb|ACO69358.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 464

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 176/375 (46%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 92  FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPVLEK 151

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   +  +   A+ + PTRELA+Q  +  + L     V V V  GG S+  +   L
Sbjct: 152 ------TDTSKNVIQAVLLVPTRELALQTSQVCKELGKHLNVQVMVTTGGTSLKDDIMRL 205

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIVV TPGRL D        ++    + +DEAD++L   F+  I  ++D  P+ R+
Sbjct: 206 HQPVHIVVATPGRLVDLASKGVAKLNQCTMLAMDEADKLLSPEFQPVIAQLIDFLPRNRQ 265

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    + +  + Y +    +N+  E             V    + + +  +   
Sbjct: 266 ILLYSATFPVTVKSFKEKYLRKPFVINLMEELTLKGI-TQYYAFVEEKQKVHCLNTLFSK 324

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 325 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMMQSHRNRVFHDFRNGACRNLVSS 384

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+SV +I  + +    R+ +
Sbjct: 385 DLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIEK 444

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P+++
Sbjct: 445 ELGTEIQQIP-PTID 458


>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
 gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
 gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
          Length = 622

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 192/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 444

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 182/374 (48%), Gaps = 8/374 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  AL++ G+ + T +Q+  +   +  +D+L  AQTG+GKT  F L +  
Sbjct: 2   TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    +         AL ++PTRELA Q+ +  +           + +GGV   R+ R+
Sbjct: 62  KI---AEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERN 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IVV TPGRL DH+R   L +++   V++DEAD MLD+GF  DI  I+   PK R
Sbjct: 119 LKRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDN--AIVN 237
           + L+FSAT  P I  LA  +Q DAV V +  E +    I      +   S +      V 
Sbjct: 179 QSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     I+F  T+ S    +  L +  +   AL G+ SQ  R+  L   R G  +V
Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAGR G ++       +    
Sbjct: 299 LVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVR 358

Query: 358 RLFREANVSVVWEP 371
            +   A   +   P
Sbjct: 359 SIETMAGKPIPHSP 372


>gi|213511116|ref|NP_001134430.1| eukaryotic initiation factor 4A-III [Salmo salar]
 gi|251764756|sp|B5DG42|IF4A3_SALSA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197631985|gb|ACH70716.1| eukaryotic translation initiation factor 4A isoform 3 [Salmo salar]
 gi|209733202|gb|ACI67470.1| Eukaryotic initiation factor 4A-III [Salmo salar]
          Length = 406

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 94  CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 148 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 328 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 484

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 197/370 (53%), Gaps = 9/370 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +  A +  G+   + +Q   +   L  KD++  AQTGSGKT AF L + 
Sbjct: 38  KSFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL      F       AL +APTRELA Q+ +++  L +  GV  AV +GG+ +  +  
Sbjct: 98  QTLWENPQPF------FALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSI 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH+      ++  LK +V+DEAD +LDL F   I+ +L   PK
Sbjct: 152 ALSKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPK 211

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   +FSAT++  +  L +      VRV ++S+    S +    +L+ L ++D+ ++ +
Sbjct: 212 ERNTYLFSATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKNKDSYLLYL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                + + I+F  T A   R + +L    F  + L G+++Q  R  +L   + G   + 
Sbjct: 272 ANELSSSSMIIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSIL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P ++LVI+ ++ +N ++ +HR GRT RAGR G S+ ++ Q      +R
Sbjct: 332 VATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEILQR 391

Query: 359 LFREANVSVV 368
           +       + 
Sbjct: 392 IESHIGKKMT 401


>gi|304391684|ref|ZP_07373626.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
 gi|303295913|gb|EFL90271.1| probable ATP-dependent RNA helicase Exp9 [Ahrensia sp. R2A130]
          Length = 532

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 188/373 (50%), Gaps = 7/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   +  A+   GY   T +Q   +   L  +DV+  AQTG+GKT AF L + 
Sbjct: 1   MKFSDLGLSPKVLAAVEASGYTEPTPIQAQAIPEVLNRRDVMGIAQTGTGKTAAFTLPMI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S         + A  P  L + PTRELA QV +  E       + VA+ IGG S+ ++ +
Sbjct: 61  SL---SEKGRARARMPRTLILEPTRELAAQVEQNFEKYAVNHKLNVALLIGGTSMEKQMK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  GA +++ TPGRL D      + ++ ++ +V+DEAD MLD+GF  DIE I+   P  
Sbjct: 118 ILDRGADVLIATPGRLLDLFERGRILMNGVEILVIDEADRMLDMGFIPDIERIVKMVPFT 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAIV 236
           R+ L FSAT+ P I  LA  + ++ V+V +A+       ++ +   A       R     
Sbjct: 178 RQTLFFSATMPPIIEKLADQFLQNPVQVMVAAAATTAKTVEQKLVKAPKKDFEKRAKLRD 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I      KNAI+FC+ +  V+   + + +  + V +L G++ Q  R   L   RD    
Sbjct: 238 VIDSQDNIKNAIIFCNRKVDVATLHRSMTKRGYSVGSLHGDMDQSARMKTLAAFRDNEIT 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+DVAARG+D+PD+  V + ++  +P++ +HR GR GRAGR G +   +     R  
Sbjct: 298 HLVASDVAARGLDIPDVSHVFNYDVPIHPDDYVHRIGRCGRAGRDGWAFTFVTPADDRYI 357

Query: 357 ERLFREANVSVVW 369
           + +       + +
Sbjct: 358 KAVMALTGDEIEY 370


>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
          Length = 613

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 171 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 230

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 231 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 290

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 291 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 350

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 351 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 410

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 411 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 469

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 470 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 529

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 530 ACDESVLMDLKALLLEAKQKVPP 552


>gi|39995629|ref|NP_951580.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|39982392|gb|AAR33853.1| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens PCA]
 gi|307634711|gb|ADI83374.2| ATP-dependent RNA helicase RhlB [Geobacter sulfurreducens KN400]
          Length = 443

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 119/398 (29%), Positives = 210/398 (52%), Gaps = 6/398 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N+P+ + + +++ G+ + T +QE  L   L  KDV   AQTG+GKT AF ++L 
Sbjct: 1   MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL    R      P A+ +APTREL VQ+ ++ + L A  G  +    GGV   +++ 
Sbjct: 61  TKLLRSG-RGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKN 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D+++ K  ++  ++ +V+DEAD M D+GF  D+ FIL   P  
Sbjct: 120 ALKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPY 179

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT++  +  LA  +     +V +  E      ++     V   ++   ++ 
Sbjct: 180 DKRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLG 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR  G +  ++F +T+       + L  + F    +SG++ Q++R   L+  + G+  +
Sbjct: 240 LLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLPI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  ++     E
Sbjct: 300 MIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLE 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +       +  E A   + +   D +R+   P   ++
Sbjct: 360 AIHEYIKDKIPVEWAE--DDLFVHDFKRVKPRPKGQET 395


>gi|302801091|ref|XP_002982302.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
 gi|300149894|gb|EFJ16547.1| hypothetical protein SELMODRAFT_228839 [Selaginella moellendorffii]
          Length = 412

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 194/380 (51%), Gaps = 9/380 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  R  DV+  AQ+G+GKT  F   + 
Sbjct: 39  ETFDSMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCRGLDVIQQAQSGTGKTATFCSGIL 98

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L          +   AL +APTRELA Q+ + +  L       V  C+GG  V +++R
Sbjct: 99  QQLDGH------LNECQALVLAPTRELAQQIEKVMRALGDYLQTKVHACVGGTDVRQDQR 152

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             Q+G H+VVGTPGR+ D +R + L   H++  VLDEADEML  GF+D I  I    P K
Sbjct: 153 ICQSGVHVVVGTPGRVYDMLRRRALRSEHIRMFVLDEADEMLSRGFKDQIYDIFQLLPAK 212

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 213 VQVGLFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 272

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+TR  V   T  L      V A  G++ Q  R   ++  R G +RV 
Sbjct: 273 YETLAITQSVIFCNTRRKVDWLTDKLRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ ++    
Sbjct: 333 ITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFLTKDDEKMLFD 392

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + +  N  +   P+   + I
Sbjct: 393 IQKFYNTVIEELPSNVADLI 412


>gi|213018866|ref|ZP_03334674.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212995817|gb|EEB56457.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 402

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 129/396 (32%), Positives = 207/396 (52%), Gaps = 12/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +ALS+      T +Q   +   L+ KD+L SAQTG+GKT+AF + L + L+ E 
Sbjct: 3   LPTLLRQALSKNNLCVPTPIQVQAIPLALQGKDILGSAQTGTGKTLAFAIPLVAKLMNEP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
              S      AL I PTRELA QV  E+  L +++ +  VA+ IGG  + R+   LQ   
Sbjct: 63  SIGS------ALVIVPTRELAHQVTSEIRKLLSQSSLLRVALLIGGEPIFRQLNQLQKKP 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++GTPGR+ DHI  K L   ++  +VLDE D M D+GF   IE I+   PK R+ LMF
Sbjct: 117 QIIIGTPGRIIDHIERKTLVTRNVGILVLDETDRMFDMGFGIQIEEIMKHLPKIRQTLMF 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y     RV++  +      I    V  + S++   +V  L      
Sbjct: 177 SATLPGEIVKLTEKYLNQPERVSVDCQATTSVKIKQEVVYASESEKYGKLVTQLCQRKGS 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+    +    L +  +  +A+ G+L Q +R   +   R GR ++ +ATDVA+
Sbjct: 237 III-FVKTKRGADQLADKLHKDDYSALAIHGDLRQHKRERVIDSFRRGRNQIMVATDVAS 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P ++ VI+ ++  +  + +HR GRT RAG +G ++  +    +RR   L  +   
Sbjct: 296 RGLDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQDKRRLPALADKEGE 355

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
                   S    ++R++++I + P  L +  G +K
Sbjct: 356 PNFDCSMQS----QKRNSKKIFKRPSTLKAKYGRKK 387


>gi|242021756|ref|XP_002431309.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516577|gb|EEB18571.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 675

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 113/372 (30%), Positives = 183/372 (49%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  +   + ++G+   T++Q       L   D++  AQTGSGKT+A+ L     +  +
Sbjct: 128 NWPDYVQREIQKQGFTEPTAIQAQGWPIALSGMDMVGIAQTGSGKTLAYILPAIVHINHQ 187

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P+ L +APTRELA Q+ +        + V      GG     + RDL++G 
Sbjct: 188 -PRLLRGEGPIVLVLAPTRELAQQIQQVACDFGTSSAVRNTCIFGGAPKMLQARDLESGV 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+
Sbjct: 247 EICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMW 306

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILRY 241
           SAT    +  LA+ +  D V++NI S     +    + V V        +   ++N +  
Sbjct: 307 SATWPKEVRRLAEEFLNDYVQINIGSLQLSANHNILQIVDVCSEYEKQTKLLKLLNEIAN 366

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+  V    + +  + +Q +A+ G+ SQ +R   L   R GR  + +AT
Sbjct: 367 EPETKTMIFVETKKKVDEIARAVTRYGYQALAIHGDKSQSDRDYVLNQFRCGRVNILVAT 426

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+ D++ VI+ +  +N E+ +HR GRTGR  + G +      +   +A  L  
Sbjct: 427 DVAARGLDVDDVKFVINFDYPNNSEDYVHRIGRTGRHDKTGTAYTFFTPSNVNKAGDLVA 486

Query: 360 -FREANVSVVWE 370
             +EAN  V  +
Sbjct: 487 VLQEANQVVNPK 498


>gi|149191663|ref|ZP_01869906.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
 gi|148834504|gb|EDL51498.1| ATP-dependent RNA helicase DbpA [Vibrio shilonii AK1]
          Length = 460

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 140/401 (34%), Positives = 218/401 (54%), Gaps = 13/401 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L   GY ++T +Q   L   L  KDV+   +TGSGKT AF L + S L  +
Sbjct: 10  NLPSELLGTLDSLGYASMTPIQAEALPKILAGKDVIGQGKTGSGKTAAFSLGVLSNLRVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D +PK+R+ L+
Sbjct: 124 AHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFKDALDAIIDQAPKERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I T+A    K    V + S++   S   +      L +RDNA+ N+L  H  
Sbjct: 184 FSATFPEQIQTIAARVMKQPEVVKVESKHDHSSIKQFFYQTNTLEERDNALENLLLTHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+  V      L    F V+ + G+L Q++R  AL    +    + +ATDVA
Sbjct: 244 ESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRDRDQALVQFANKSVSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++     +    R  R+    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGNKGLAFSFYSEKEFYRVARIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +     P+      + + +  Q  +    IQG +K+ + 
Sbjct: 364 MPIEPSELPA------KSSNQPFQAKMVTIQIQGGKKQKLR 398



 Score = 49.6 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G KQK     ++  L     ++   IG I + P   +V V           +
Sbjct: 384 MVTIQIQGGKKQKLRPGDILGALTGDKTLSGNQIGKINMFPMSAYVAVEKAIAKQALGKI 443

Query: 526 KLDK 529
              K
Sbjct: 444 TNGK 447


>gi|24374899|ref|NP_718942.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24349603|gb|AAN56386.1|AE015775_3 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 409

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 208/385 (54%), Gaps = 4/385 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   L+A+
Sbjct: 7   SLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMAD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N     A A  AL + PTRELA+QV +        T + V +  GGVS+  ++     G 
Sbjct: 67  NQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   LN++ L  +V DEAD MLD+GF D+I+ +L   P +R+ L+F
Sbjct: 127 DVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I + +KN  +D  R+ +A  N   + I+ R   +    +   + +++R    +
Sbjct: 187 SATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T  L +      +  G+LSQ  R   LQ  + G  +V +ATDVAA
Sbjct: 247 QVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    + 
Sbjct: 307 RGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETLLDK 366

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP 390
            +  +  P  E     D  ++L +P
Sbjct: 367 RLPQQWYPGFEP----DFNKMLPEP 387


>gi|67969935|dbj|BAE01315.1| unnamed protein product [Macaca fascicularis]
          Length = 509

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 183/373 (49%), Gaps = 8/373 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +      
Sbjct: 1   MDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ-PFLER 59

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L +APTRELA QV +          +      GG     + RDL+ G  I + T
Sbjct: 60  GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 119

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+SAT   
Sbjct: 120 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 179

Query: 192 AITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN---A 247
            +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    ++     
Sbjct: 180 EVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKT 239

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IATDVA+RG
Sbjct: 240 IVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 299

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREAN 364
           +D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L    REAN
Sbjct: 300 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 359

Query: 365 VSVVWEPAPSVEA 377
            ++  +    VE 
Sbjct: 360 QAINPKLLQLVED 372


>gi|121998794|ref|YP_001003581.1| DEAD/DEAH box helicase domain-containing protein [Halorhodospira
           halophila SL1]
 gi|121590199|gb|ABM62779.1| DEAD/DEAH box helicase domain protein [Halorhodospira halophila
           SL1]
          Length = 430

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/391 (31%), Positives = 201/391 (51%), Gaps = 6/391 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + + L + G  + T +Q A L   L   ++   AQTG+GKT AF +A    
Sbjct: 11  FTDLPIHDAVLDGLDDAGLSHCTPIQAATLPRTLAGGNIAGEAQTGTGKTAAFVVATLHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L++       A  P A+ +APTRELA+Q+  + E + A TG+  A   GG     +R+ L
Sbjct: 71  LMSH-PVEEDAVGPWAIMLAPTRELALQIYNDAEQIGAYTGLKFAAVYGGTGYESQRKQL 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G  +++GTPGR+ D  + K  N+ +++ VVLDEAD M DLGF  DI F+L   P   +
Sbjct: 130 QEGVDVIIGTPGRIIDFHKQKVFNLRNIEVVVLDEADRMFDLGFISDIRFLLRRMPPADQ 189

Query: 182 MLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L   FSAT+S  +  LA  +  D  RV + SE R    +      +A  D+ + +V +L
Sbjct: 190 RLNLLFSATLSYRVMELAWEHMGDPPRVAVESEQRTADHVRQTLYHIAKEDKTSFVVGLL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           ++   +  ++F +T+ +  R    L  +  +   +SG++ Q +R   L+  R G   V +
Sbjct: 250 QHIDPRRTLIFANTKRAAERLVGYLKGNGIEAAVISGDIPQNKREQLLEQFRTGELPVLV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+ +  +  VI+ +L  +PE+ +HR GRT RAG  G ++ +           +
Sbjct: 310 GTDVAARGLHIDAVSHVINFDLPHDPEDYVHRIGRTARAGESGDAISLACDEYVFSLPDI 369

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                  +   P P+ E   E +A ++ + P
Sbjct: 370 EAYLAEKIPSAPPPA-EYFAELEAPKMPRKP 399


>gi|58265490|ref|XP_569901.1| RNA helicase [Cryptococcus neoformans var. neoformans JEC21]
 gi|134108933|ref|XP_776581.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74686062|sp|Q5KJI2|DHH1_CRYNE RecName: Full=ATP-dependent RNA helicase DHH1
 gi|50259261|gb|EAL21934.1| hypothetical protein CNBC0740 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226133|gb|AAW42594.1| RNA helicase, putative [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 625

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 166/372 (44%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   +   G+   + +QE  +   L  +D+L  A+ G+GKT +F +   + 
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L A    +  +   G +    +   
Sbjct: 98  IN------TSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILR 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ   HI+VGTPGR+ D       +++     V+DEAD++L   F   IE  L   P++R
Sbjct: 152 LQQPVHILVGTPGRILDLGSKGIASLNKCGVFVMDEADKLLSEDFMPVIEQTLALCPQER 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSAT    +      +      +N+  E             V  S + + +  +  
Sbjct: 212 QVMLFSATFPWTVKEFKDQHMVQPYEINLMDELTLKGV-TQYYAYVEESQKVHCLNTLFS 270

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G+++ ++    +    R+ 
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 361 REANVSVVWEPA 372
            E    +   PA
Sbjct: 391 SELGTEIAPIPA 402


>gi|308446500|ref|XP_003087194.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
 gi|308260015|gb|EFP03968.1| hypothetical protein CRE_11658 [Caenorhabditis remanei]
          Length = 526

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 145/493 (29%), Positives = 217/493 (44%), Gaps = 24/493 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F      + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLDESLQKALESLGFTTPTPVQELSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       DR    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 63  NALAGQDTFVPFKDRMKAVTQPNILVISPTRELAQQVCQDAIAFVRHMKGVRVAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDLVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  +++ LMFSAT +P I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLALNRKQTLMFSATFAPRIINLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLNEEDVDQAVVFASTQEDTDMLAEELAEAGLSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGKAITLATYRE 362

Query: 353 QRRAERLFR--EANVSVVW----EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + +   L    EA +SV      EP+P           R   +                 
Sbjct: 363 RGKIRALEDYLEARLSVSEIEGLEPSPPPARGSRDGGGRGRSNGGGRREGGRGGFGGGRR 422

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG- 465
              + +         +    G   P           R  + DD      G        G 
Sbjct: 423 FEGESN--------FKRREGGDDRPRRSFDDKPRGDRPSYGDDRPKRDFGDRPPRREGGF 474

Query: 466 SSWFSLSVGSKQK 478
                 S G + +
Sbjct: 475 GDRPQRSFGGEDR 487


>gi|260545280|ref|ZP_05821021.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260754789|ref|ZP_05867137.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260758012|ref|ZP_05870360.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260761835|ref|ZP_05874178.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883806|ref|ZP_05895420.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|261214040|ref|ZP_05928321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260096687|gb|EEW80562.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
 gi|260668330|gb|EEX55270.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 4 str. 292]
 gi|260672267|gb|EEX59088.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674897|gb|EEX61718.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 6 str. 870]
 gi|260873334|gb|EEX80403.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|260915647|gb|EEX82508.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
           bv. 3 str. Tulya]
          Length = 458

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 215/452 (47%), Gaps = 20/452 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
            + AP           ++   P+         K            E   A   +  R   
Sbjct: 383 IKDAPV----------KLAPAPVA--------KGPAPQGQRTEQAESRKAPAHKHRRPAQ 424

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            A E+    +  S  +      R F+  GG R
Sbjct: 425 KAGEQHRAGAHASAGEAAPKPKRPFRSNGGQR 456


>gi|224139932|ref|XP_002323346.1| predicted protein [Populus trichocarpa]
 gi|222867976|gb|EEF05107.1| predicted protein [Populus trichocarpa]
          Length = 611

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 196/388 (50%), Gaps = 20/388 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +I   + + + +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 154 VNTFADIDLGEAVNQNIRRCKYVKPTPVQRNAIPILLAGRDLMACAQTGSGKTAAFCFPI 213

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++ E     P       PLAL ++PTREL+ Q+  E +    +TGV V V  GG  +
Sbjct: 214 IAGIMREQYVQRPHGGRTMYPLALILSPTRELSSQIHDEAKKFSYQTGVKVVVVYGGAPI 273

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----E 170
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I    E
Sbjct: 274 NQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVE 333

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +       R+ ++FSAT    I  LA ++  + + + +         I  R   V   D
Sbjct: 334 QMDMPPCGMRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQEID 393

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+        +L  + F   ++ G+ +QQER
Sbjct: 394 KRSHLMDLLHAQRETEVNSKHSLTLVFVETKKGADSLEHLLHVNGFPATSIHGDRTQQER 453

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + G+  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 454 EMALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNTGL 513

Query: 344 SVFVIPQNMQRRAE---RLFREANVSVV 368
           +     +N    A     L +EAN  V 
Sbjct: 514 ATAFFNENSMSLARPLADLMQEANQVVP 541


>gi|91791813|ref|YP_561464.1| ATP-dependent RNA helicase RhlB [Shewanella denitrificans OS217]
 gi|123166515|sp|Q12S35|RHLB_SHEDO RecName: Full=ATP-dependent RNA helicase rhlB
 gi|91713815|gb|ABE53741.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 432

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 126/391 (32%), Positives = 204/391 (52%), Gaps = 14/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL     +    + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S   +R  
Sbjct: 71  LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
           L  G  I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+S  +  LA ++  D  +V +  E +   +I       +  D+   ++ +
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G   V 
Sbjct: 251 MEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGDLDVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACETYALNLPA 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           + +    SV          +   D + +L D
Sbjct: 371 IEQYIGHSVP---------VSRYDREALLDD 392


>gi|325102936|ref|YP_004272590.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324971784|gb|ADY50768.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 3/373 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + NI   I  +L E G+   T +Q   +   L  +D+L  AQTG+GKT AF + L 
Sbjct: 1   MKFNKYNISSGIKRSLEEAGFKKPTDIQFKSIPQILSGQDILAIAQTGTGKTAAFAIPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L          +   A+ + PTRELA+Q+ +    L   T ++    IGGV +  + +
Sbjct: 61  SMLERSKPHLDKPT-IKAVVMVPTRELAIQIEQVFLNLGKYTSIIPLAVIGGVEIEPQLK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L N A +++ TPGR+ D +    L +  +  +VLDEAD ML+ GF +DI+ ++   PK+
Sbjct: 120 KL-NKADVLIATPGRIMDLVFKGHLYLKQIDFLVLDEADRMLEQGFYNDIKKLITLLPKR 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ + FSATI+  I  LA       VR+ ++ ++    ++D+    V + D+   +  ++
Sbjct: 179 RQTMFFSATINDTIKDLAYALVNKPVRIQLSPKDPVSKNVDHAVAYVGMDDKRFFLERLI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  IVF  T+    R  K +         + G+  Q+ R   L   RDG+ ++ I
Sbjct: 239 KENQGKKIIVFVRTKIRAERVAKAMERVNIHTETIHGDKDQKNRFQVLDNFRDGKNQILI 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD++ARG+D+  ++ V++ +L   PEN +HR GRTGR   +G +V    +  +   + +
Sbjct: 299 ATDISARGLDVKGVDFVVNYDLPEVPENYVHRIGRTGRGTSRGRAVSFCSEEEKAYLDAI 358

Query: 360 FREANVSVVWEPA 372
                  +     
Sbjct: 359 QEYIGKPIDVMEI 371


>gi|311264024|ref|XP_003129962.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Sus
           scrofa]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|291412972|ref|XP_002722747.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Oryctolagus
           cuniculus]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|149428666|ref|XP_001516184.1| PREDICTED: similar to DDX6 protein [Ornithorhynchus anatinus]
          Length = 444

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 59  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 118

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 119 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 172

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 173 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 232

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 233 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 292 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 352 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 411

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 412 EQLGTEI--KPIPS 423


>gi|57085923|ref|XP_536551.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
 gi|73954674|ref|XP_849975.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 2 [Canis familiaris]
 gi|126326574|ref|XP_001370626.1| PREDICTED: similar to DDX6 protein [Monodelphis domestica]
 gi|149716584|ref|XP_001503067.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Equus
           caballus]
 gi|296216344|ref|XP_002754541.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Callithrix jacchus]
 gi|301791568|ref|XP_002930752.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like
           [Ailuropoda melanoleuca]
 gi|281351767|gb|EFB27351.1| hypothetical protein PANDA_021316 [Ailuropoda melanoleuca]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|164664518|ref|NP_004388.2| probable ATP-dependent RNA helicase DDX6 [Homo sapiens]
 gi|114640683|ref|XP_508798.2| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 2 [Pan
           troglodytes]
 gi|332208418|ref|XP_003253300.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Nomascus
           leucogenys]
 gi|332837881|ref|XP_003313402.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1 [Pan
           troglodytes]
 gi|116241327|sp|P26196|DDX6_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=ATP-dependent RNA helicase p54; AltName: Full=DEAD
           box protein 6; AltName: Full=Oncogene RCK
 gi|40675584|gb|AAH65007.1| DDX6 protein [Homo sapiens]
 gi|261858306|dbj|BAI45675.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
 gi|312152252|gb|ADQ32638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [synthetic construct]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|86159377|ref|YP_466162.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775888|gb|ABC82725.1| DEAD/DEAH box helicase-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 487

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 7/385 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +    AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 21  NLSEKTLHALERAGFEHPTPIQTQAIPPALAGRDVIGAAATGTGKTAAFLLPIIERLSGA 80

Query: 66  NDRFSPA-----SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  PA       P AL +APTRELAVQ+  EL+       V  A+ IGGV +  +   
Sbjct: 81  ATKDRPAAAHARPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGAQSAA 140

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   PK R
Sbjct: 141 LRDH-EVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPKVR 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++  L 
Sbjct: 200 QTLLFSATMAGEVADFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREK-LPLLMALL 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ RV +A
Sbjct: 259 EDDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G +   +          + 
Sbjct: 319 TDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFVSPEELDLLRDIE 378

Query: 361 REANVSVVWEPAPSVEAIRERDAQR 385
           R     +     P   A  + + QR
Sbjct: 379 RLTRAPIPRAEVPREHATFQAELQR 403


>gi|219804752|ref|NP_001137339.1| probable ATP-dependent RNA helicase DDX6 [Bos taurus]
 gi|296480110|gb|DAA22225.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Bos taurus]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|458727|dbj|BAA04482.1| RCK [Homo sapiens]
 gi|189053803|dbj|BAG36055.1| unnamed protein product [Homo sapiens]
          Length = 472

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 87  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 146

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 147 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 200

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 201 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 260

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 261 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 319

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 320 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 379

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 380 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 439

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 440 EQLGTEI--KPIPS 451


>gi|323345624|ref|ZP_08085847.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
 gi|323093738|gb|EFZ36316.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella oralis
           ATCC 33269]
          Length = 548

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 185/373 (49%), Gaps = 8/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +AL +  +   T VQE  +   L ++DVL  AQTG+GKT A+ L + S L   
Sbjct: 7   NLNNNVLDALYDMHFDTCTPVQERCIPEILNKRDVLGVAQTGTGKTAAYLLPILSMLD-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDL 121
            D   P  A   + ++PTRELA Q+ + ++        V +V + G +         + L
Sbjct: 65  -DGGYPKDAINCIIMSPTRELAQQIDQAMQGFGYYLSGVSSVAVYGGNDGNRYDQELKSL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+ TPGR   HI    +++S +   +LDEAD MLD+GF +DI  I    P   +
Sbjct: 124 RLGADVVIATPGRFISHISLGNVDLSKVSFFILDEADRMLDMGFSEDIMTIAKQLPPTCQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +MFSAT+   I  LA N           + ++    I   A +   + + + I NI   
Sbjct: 184 TIMFSATMPDKIEELA-NTLLKNPVTIKLAVSKPAEKIRQSAYVCYETQKMDIIKNIFNA 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  ++  V + TK L +       +  +L Q +R + +   + G+  V +AT
Sbjct: 243 GDLKRVIIFSGSKQKVKQITKALQQKNVNCGEMHSDLEQAQRDDMMFKFKSGQLDVIVAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ +RGID+ D+ +VI+ ++  + E+ +HR GRT RA R G+++ +I ++     +++ +
Sbjct: 303 DIISRGIDIDDIAMVINYDVPHDAEDYVHRIGRTARADRDGVAITLINEDDIYYFQQIEK 362

Query: 362 EANVSVVWEPAPS 374
                V     P 
Sbjct: 363 FLGKPVEKTALPE 375


>gi|289548721|ref|YP_003473709.1| DEAD/DEAH box helicase [Thermocrinis albus DSM 14484]
 gi|289182338|gb|ADC89582.1| DEAD/DEAH box helicase domain protein [Thermocrinis albus DSM
           14484]
          Length = 365

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 191/361 (52%), Gaps = 9/361 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            F  + + + ++++E G+ + T +Q   +   L   D+L  A TG+GKT AFG+ +   L
Sbjct: 4   SFSQLSEPLRKSITEMGFQHPTPIQREAIPLALAGYDLLGQAATGTGKTAAFGIPILEKL 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDL 121
             E           AL + PTRELA+QV  +L  L    G+   A   G       +   
Sbjct: 64  GKE-------DLLGALILTPTRELALQVKDQLFQLARYKGLRVFAFYGGTSVAKDIQVLS 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VVGTPGR+ D I    +++  ++  VLDEAD MLD+GF +DIE+I+   P +R+
Sbjct: 117 TVPPHVVVGTPGRIKDLIGRGYISLEKVRFFVLDEADLMLDMGFIEDIEYIVSHLPNRRQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             MFSAT+   +  LAK Y ++  RV    +   +    +    L + + + + +  ILR
Sbjct: 177 TFMFSATLPRQVEELAKRYLREHYRVVKVYTPELRPKIEERLIRLSSSAQKLSELEKILR 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  +  IVF  T+       +VL    F  VAL G+++Q++R +AL++ RDG+ ++ +A
Sbjct: 237 EHLLEKVIVFVKTKKDAKDLHEVLRRKGFNAVALHGDMTQRQRESALKLFRDGKVKIVVA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+  + LVI+  L  +PE  +HR GRTGR G  G +   +     R   R+ 
Sbjct: 297 TDVASRGLDIKGVGLVINYHLPEDPEIYIHRIGRTGRIGSYGKAYSFVTPEDSRALWRIK 356

Query: 361 R 361
           R
Sbjct: 357 R 357


>gi|221131953|ref|XP_002164829.1| PREDICTED: similar to LOC556764 protein [Hydra magnipapillata]
          Length = 674

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 197/378 (52%), Gaps = 10/378 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+ +  P  +G+AL +  +   T++Q    +  L  ++++  AQTGSGKT++F L   
Sbjct: 106 QSFDELCIPDYVGDALRKFNFKEPTAIQSQGFSVALSGRNMVGIAQTGSGKTISFVLPAV 165

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +    +    P+ L + PTRELA+QV          T V      GG S   + R
Sbjct: 166 IHINNQPP-LNQGDGPICLVLCPTRELAIQVQSVAGQFGLTTRVRSTCIYGGASKGPQIR 224

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G+ IVV TPGRL D I  + +++  +  +VLDEAD MLD+GF   I  I+D     
Sbjct: 225 DLERGSEIVVATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRPD 284

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNI 238
           R++LM+SAT    +  LA+++  D +++NI S +   +        +    ++D  +V +
Sbjct: 285 RQVLMWSATWPKEVRKLAEDFLTDYIQINIGSSDIHANHNILQIVDVCEEYEKDRKLVKL 344

Query: 239 LRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L     +     I+FC T+      T+ L +  +  + + G+ SQ ER   L+  R G+A
Sbjct: 345 LEEIMGEKENKTIIFCETKRKTDDITRRLRKDGWPAMCIHGDKSQPEREWVLKEFRSGKA 404

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+PD+  V++ +  ++ E+ +HR GRT RAG  G +         + 
Sbjct: 405 PILIATDVASRGLDIPDINFVVNYDYPNSGEDYIHRIGRTARAGNTGTAYTFFTSANGKY 464

Query: 356 AERLFR---EANVSVVWE 370
           A  L +   EAN ++  +
Sbjct: 465 AAELLKVMEEANQTIPPK 482


>gi|325188272|emb|CCA22812.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 470

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +++
Sbjct: 96  IDTFDAMELREDLLRGIYAYGFEKPSAIQQRAVKPILLGHDCIAQAQSGTGKTATFTVSI 155

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL +APTRELA Q+ + +  +     + V  C+GG +V  + 
Sbjct: 156 LQKININ------LKETQALILAPTRELAQQIVKVIAAIGDYMSINVHACVGGTAVRDDI 209

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G HIVVGTPGR+ D I    L    +K  VLDEADEML  GF+D I  +    P+
Sbjct: 210 HTLQQGVHIVVGTPGRVGDMINQGALRTEAVKMFVLDEADEMLSRGFQDQIYDVFRFLPE 269

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   +  + + + +D +R+ +  +      I    V +     + + + +
Sbjct: 270 SVQVALFSATMPQEVLEVTQKFMRDPIRIMVKRDELTLEGIKQFFVAIEREEWKFDTLCD 329

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   T+ +    F V A+ G++ Q++R   ++  R G +RV
Sbjct: 330 LYETLTITQAIIYCNTRRKVDWLTEKMQSKDFTVSAMHGDMDQRQRDIIMREFRSGSSRV 389

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LV++ +L  N EN +HR GR+GR GRKG+++  + +   R  +
Sbjct: 390 LITTDLLARGIDVQQVSLVVNYDLPLNRENYIHRIGRSGRFGRKGVAINFLTECDVRYLK 449

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  N  +   P    + I
Sbjct: 450 DIEKFYNTQIEEMPMNVADLI 470


>gi|256017200|ref|NP_001006319.2| probable ATP-dependent RNA helicase DDX6 [Gallus gallus]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEA+++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEANKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|89092815|ref|ZP_01165767.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89082840|gb|EAR62060.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 415

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 112/362 (30%), Positives = 185/362 (51%), Gaps = 1/362 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  AL E GY  +T +Q   + P  R +D+L +AQTG+GKT AF L +   L  +
Sbjct: 7   DLHPAIQSALDECGYSEMTPIQRQAIVPARRGRDILANAQTGTGKTAAFSLPVLQQLADK 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA Q+   +       G+ +    GGV++  + + L+ GA
Sbjct: 67  PKELESGQ-VRALILTPTRELAQQLFDTIGRYNQHLGLRMVAVYGGVNLDTQMKKLRRGA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGR+ +HI    +N+   + VVLDEAD MLD+GF  D+  ILD +PK R+ L+F
Sbjct: 126 DLLIATPGRMLEHINACNVNLGTTEFVVLDEADRMLDMGFVTDVMSILDVTPKSRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S ++  L+        ++  A  N     I++    V    + +    +++     
Sbjct: 186 SATLSDSVHKLSNKILTRPEKIKAARHNTIADTIEHVVYPVEEQRKADLFAELIKEENWF 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF ST+A  +     L     + V   G+ SQ  R  A+   + G+ +V +AT+VAA
Sbjct: 246 QVLVFTSTKAQANELMMDLKYDGIEAVLCHGDKSQGARRRAVADFKAGKIQVLVATEVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE V++  L    E+ +HR GR GRAG  G ++  + +  ++    + +    
Sbjct: 306 RGLDIQGLEQVVNYNLPYLAEDYVHRVGRAGRAGMAGKAISFVSREEEQALASIEKLIGS 365

Query: 366 SV 367
            +
Sbjct: 366 QI 367


>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 458

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 212/458 (46%), Gaps = 8/458 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS +GY   T +Q  ++   LR +D+L +AQTG+GKT AF L +   L A +
Sbjct: 8   LSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPIIQKLNASS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  S  ++  AL I PTRELA QV   +        +      GG ++ R+ ++L  G  
Sbjct: 68  E--SGQASARALIIVPTRELASQVAEAIRSYAEGLELNCIALYGGANMARQAKELSEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL +  +   + +S ++ +V DEAD + D+GF  ++  I+D  P  R+ ++FS
Sbjct: 126 IIVATPGRLIELNKQGHVPLSRIEYLVFDEADTIFDMGFIREVGQIIDLLPLNRQNMLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++ A+  L++   K  + V I +       +      V    +   +  ++  +    
Sbjct: 186 ATMTGAVKQLSEKILKKPLLVEIDNLKAADMTLRQVVHPVEKERKKELLSFLIGSNNYPQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+      +  L     +   + G+     R  AL   R+G AR+ +ATD+AAR
Sbjct: 246 VLVFTRTKTEADEVSAELTASGLKNAVIHGDKKHGARDRALSEFREGSARILVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L++VI+ ++     + LHR GRTGRAG +G+++ ++        +++      +
Sbjct: 306 GLDIEGLDVVINYDIPHVSTDYLHRIGRTGRAGNEGLAITLLSSGEHISWKKIITMLGKN 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-KMVDVLLAKHDPEKIAAGFLRIHR 425
           V     P  E   +     +++      S +G++K K       K   E +   F  I +
Sbjct: 366 VETVLVPGFEPPAD---NALVKTRGKSLSKEGEKKGKTAGAFGNKRKKEPVQPKF--IGK 420

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            G     +       SGRD    +++            
Sbjct: 421 RGPRVARDEPAGKSASGRDSAFGNTKKPSPKKSGGRGR 458


>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
 gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Penicillium marneffei ATCC 18224]
          Length = 1207

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 202/421 (47%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +S+ GY + TS+Q   L   +  +DV+  A+TGSGKTV+F L +   +  +      
Sbjct: 587 LDVISKLGYEHPTSIQSQALPAIMSGRDVIGVAKTGSGKTVSFLLPMFRHIKDQRP-LEN 645

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 646 MEGPISLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 705

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    ++ ++FSAT
Sbjct: 706 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMTNIRPNKQTVLFSAT 765

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA- 247
               +  LA+      V + +   +    +I     +   + +   ++ +L    +  A 
Sbjct: 766 FPRNMEALARKTLIKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLELLGNLYSDEAN 825

Query: 248 -----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 826 EDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 885

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 886 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 945

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 946 LKQSGQAVPEP---------VQKLVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 994

Query: 418 A 418
           A
Sbjct: 995 A 995


>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 755

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 145/616 (23%), Positives = 253/616 (41%), Gaps = 57/616 (9%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + +  A    GY   T +Q A++   +  +DV   A TGSGKT AF L   
Sbjct: 148 KAFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQL 207

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L    R  PA+A   L + PTRELAVQV +  E L   T +   + +GG+S + +  
Sbjct: 208 ERMLHRGPR--PAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAA 265

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    IVV TPGR+ DH+R         L  ++LDEAD +L++GF ++I+ I+   PK
Sbjct: 266 ALRTRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPK 325

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
           KR+ L+FSAT++  +  LA    K+  R++  +       +            + ++  +
Sbjct: 326 KRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFL 385

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + I+     K+ I+F  T+    R   ++     +   L G+++Q +R  AL   R G  
Sbjct: 386 MAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGTV 445

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              IATDVAARG+D+P ++ VI  +      + LHR GRT RAG+KG ++  + ++ ++ 
Sbjct: 446 THLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL 505

Query: 356 AERLFRE-ANVS-------VVWEPAPSVEAIRER--------DAQRILQDPL-------- 391
            + + +  AN+        +V E    +E + E+          +R LQ           
Sbjct: 506 VKTIAKRGANLKARIVPGNIVAEWHKKIEDMEEQIVQINYEERTERQLQKAEMEANKASN 565

Query: 392 FLDSIQGDEKKMVDVLLA-KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
            L+     + +        + D        L+          +       + R +     
Sbjct: 566 ILEHAAEIKSRPAKTWFQSERDKRNAQKDALKAMETAEMDLMDRKSHRKGAKRRQEAAGP 625

Query: 451 RAFKVGGGSRDNFKGSSWFSLSVGSKQ------KAEAR-WLMPMLCRSSGINRQSIGAIR 503
                   +R      + +    G         +       +  + R + +       + 
Sbjct: 626 DRLPDSKRARRKLAQQALYKKERGDDDTPRGGFRVTKGVKSVKAIEREARLTGGVATKV- 684

Query: 504 VQPDLTFVEVSADGVDLLRRTVKL-------DKGIQLKYLGGEKPDFRGYKSSGFKSKNS 556
                  V +  +  D   +  +        D   +++   G   DFRG          +
Sbjct: 685 -------VRMVKNARDPKAKAKRAARADVHDDDDARVQS-SGRGADFRGGFRGASPGAPA 736

Query: 557 QDGATKRFKRFKGASK 572
           +   T R  +FK ASK
Sbjct: 737 KPFKTAR-GKFKSASK 751


>gi|145588844|ref|YP_001155441.1| DEAD/DEAH box helicase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047250|gb|ABP33877.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 500

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 200/379 (52%), Gaps = 6/379 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  +   + + ++E G+   TSVQ  ++   L   D+LVS+QTGSGKT AF L L + 
Sbjct: 21  FQNFALAASLLKNVAELGFTQATSVQAQVIPAALAGGDLLVSSQTGSGKTAAFLLPLINQ 80

Query: 62  LLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+ +N   SP      P  L + PTRELA QV  +   L      +    + G   + ++
Sbjct: 81  LIEDNPNNSPVPGRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQ 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                GA +VV TPGRL D    K + +  +K +V+DEAD MLD+GF DD+E I      
Sbjct: 141 IQALKGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAG 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           + + LMFSAT +P I +LA     DA R+ +A    +H++I+ +     ++S +   + +
Sbjct: 201 RNQTLMFSATFAPKIMSLANELTTDAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEH 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       A+VF ST+    +    L  + ++  AL G + Q  R   L+ +R G  ++
Sbjct: 261 ILADATLDQAVVFASTQVESEKIADTLRANGYEASALHGAMPQAVRMRRLESLRKGHTKI 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  VI+  L   PE+  HR GRTGRAGR G+++ ++    + +  
Sbjct: 321 LVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHRDRAKIR 380

Query: 358 RLFREANVSVVWEPAPSVE 376
            + R     +V      +E
Sbjct: 381 NIERFTQQDIVASVIAGLE 399


>gi|108760847|ref|YP_634735.1| ATP-dependent RNA helicase DbpA [Myxococcus xanthus DK 1622]
 gi|108464727|gb|ABF89912.1| ATP-independent RNA helicase DbpA [Myxococcus xanthus DK 1622]
          Length = 461

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 136/404 (33%), Positives = 209/404 (51%), Gaps = 12/404 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L E  +   T +Q   +   L+ +D++  AQTGSGKT AF L L   +  ++
Sbjct: 8   LSPPLLQVLEELDFKTATPIQAQSIPVLLQGRDLVGQAQTGSGKTAAFALPLLQKVQLQH 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGA 125
            +        AL + PTREL  QV  E+  L  +   +   V  GG  +  +   L+ GA
Sbjct: 68  RKV------QALVLCPTRELCAQVAGEIRRLGRRLPGLQVLVLAGGQPIRPQLEALEKGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+ VGTPGR+ D +  + L    L  VVLDEAD MLD+GFR+D+E IL + P +R+ ++F
Sbjct: 122 HLAVGTPGRVMDVLDREALETRQLSTVVLDEADRMLDMGFREDMERILGAMPPRRQTVLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT  P I  L++++Q+  VRV          DI          D+   ++ ILR++   
Sbjct: 182 SATFPPDIEALSRDFQRQPVRV-TVEAATAGPDIQQVRYDCEPGDKQALLLRILRHYQPA 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AIVFC+ +A+V    K L+     V  L G+L Q ER   +   R+   RV IATDVA 
Sbjct: 241 SAIVFCNLKATVVELKKSLSASGVSVDGLQGDLEQFERDRVMAKFRNQSTRVLIATDVAG 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L+ VI+ +L    E  +HR GRTGRAGR G++V ++     R+ + +     V
Sbjct: 301 RGIDVEALDAVINFDLPMQAEPYVHRIGRTGRAGRAGLAVSIVTPRDGRKVDDIQLATGV 360

Query: 366 SVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
            +     E  PS +       +    D L++ + + D+ +  D+
Sbjct: 361 KLERGDVESLPSADPRNAVSLES-TWDTLYISAGRKDKMRPGDI 403



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 433 EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQKAEARWLMPMLCR 490
           ++  + L +G    R D  +             S+W    +S G K K     ++  L  
Sbjct: 350 KVDDIQLATGVKLERGDVESLPSADPRNAVSLESTWDTLYISAGRKDKMRPGDILGALTG 409

Query: 491 S-SGINRQSIGAIRVQPDLTFVEVS 514
              G+    +G I +Q  + +V V+
Sbjct: 410 EAGGLEATDVGKIEIQDHVAYVAVA 434


>gi|148230348|ref|NP_001079703.1| similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA
           helicase, 68kDa) [Xenopus laevis]
 gi|28838521|gb|AAH47981.1| MGC53795 protein [Xenopus laevis]
          Length = 607

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 183/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + E +    +   T +Q       L   D++  A TGSGKT+++ L     +  +
Sbjct: 96  SFPANVMEVIKRLNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQ 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 156 -PFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRTTCIYGGAPKGPQIRDLERGV 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 215 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ K+ V +NI +     + +I     +    ++D+ +V ++    +
Sbjct: 275 SATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 334

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 335 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 394

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +         ++   L  
Sbjct: 395 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLVS 454

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 455 VLREANQAINPKLLQLVED 473


>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
          Length = 425

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 186/365 (50%), Gaps = 1/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +Q   +   L  +D+L  AQTG+GKT +F L L        
Sbjct: 8   LSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLHYYPKIV 67

Query: 67  DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL + PTRELA QV   +        +   V  GGVS++ +++ L+   
Sbjct: 68  LKALQCFLTIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQKQRLKGRV 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH++   +N+S ++ +VLDEAD MLD+GF  DI  IL   PK+R+ L+F
Sbjct: 128 DILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLPKQRQNLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            AT S  I  LA         + +A  N     +  +   +    + + + +++R     
Sbjct: 188 FATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAHLIRKDNWY 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+    R  K L     Q +A+ G  SQ  R++AL   ++G  +V +ATD+AA
Sbjct: 248 QVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQVLVATDIAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L  V++ +L   PE+ +HR GRTGRAG  G +V ++  +       + +    
Sbjct: 308 RGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLADIEKLIEK 367

Query: 366 SVVWE 370
            + +E
Sbjct: 368 RLPFE 372


>gi|193573502|ref|XP_001943796.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Acyrthosiphon
           pisum]
          Length = 737

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 181/372 (48%), Gaps = 2/372 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + + + +  YV  T +Q   +   L  +D++  A+TGSGKT+AF   +   ++ +
Sbjct: 248 NFDDALMKIIRKSDYVQPTPIQSQAVPAALAGRDIIGIAKTGSGKTLAFIWPMLVHIM-D 306

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTREL+ Q+  E +       + V  C GG S   + + L+ GA
Sbjct: 307 QPELKEGDGPVGLILAPTRELSQQIYVEAKKFGKIYNLRVVCCYGGGSKWEQSKALEGGA 366

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D ++    N++ +  +VLDEAD M ++GF   +  I D     R+ L+F
Sbjct: 367 EIIVGTPGRVIDLVKMSATNLTRVTFLVLDEADRMFNMGFEPQVRSICDHVRPDRQTLLF 426

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA++   D +R+        ++D+    +++  SD+   +++ L    + 
Sbjct: 427 SATFKKKIEKLARDILTDPIRIVQGDVGEANTDVAQIMLVMPQSDKCQWLLDNLVQFTST 486

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVA 304
            +I+   T+   +             V L  G++ Q ER+  +   +     + +ATDVA
Sbjct: 487 GSILVFVTKKLDAEQLASTLSLKEYEVLLLHGDMDQAERNKVITKFKKQEVNIMVATDVA 546

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ +++ + +   HR GRTGRAG KG +  ++       A  L R   
Sbjct: 547 ARGLDIAHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAFTLVTPKDHEFAGHLVRSLE 606

Query: 365 VSVVWEPAPSVE 376
                 P P ++
Sbjct: 607 GVGQEVPKPLID 618


>gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 449

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/358 (30%), Positives = 184/358 (51%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A++E GY   T +Q   +   L+ K+++ +AQTGSGKT +F L +   L    
Sbjct: 8   LSEPILNAVTELGYTTPTPIQAEAIPLALKGKNLIAAAQTGSGKTASFVLPILELL--SA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELAVQV + +E       +      GGV    +++ L +G  
Sbjct: 66  GETQRKKRARALVLTPTRELAVQVCKSIELYGKHLNLNAIAIYGGVDYAPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++      +VLDEAD MLD+GF +DI  I+D+ P++R+ L+FS
Sbjct: 126 IVVATPGRLRDLYTQRAIHFDETTLLVLDEADRMLDMGFIEDITKIIDTLPEQRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    DA++++   EN    +I+     V    +   + +++       
Sbjct: 186 ATLSRQVRELAKETVCDAIQLSFNKENEAKPNIEQWITTVDKDKKSALLSHLINEQNWPQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +   +    +Q  R   L   + G+ R  I+T ++AR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIEAECIHSGRTQAIREQILADFKSGKIRYLISTGISAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+ +L LVI+ +L    +  +HR GRTGRAG  G ++ ++ ++  +    +    N
Sbjct: 306 GIDIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSKDDFKNLCMIESRLN 363


>gi|116203955|ref|XP_001227788.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
 gi|118582180|sp|Q2GQ93|DHH1_CHAGB RecName: Full=ATP-dependent RNA helicase DHH1
 gi|88175989|gb|EAQ83457.1| hypothetical protein CHGG_09861 [Chaetomium globosum CBS 148.51]
          Length = 512

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 13  FEDFGLKRDLLMGIFEAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEK 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 73  INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D    +  ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 127 QDPVHIVVGTPGRILDLAGKQVADLSECPMFIMDEADKLLSIEFTPVIEQLLRFHPKDRQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 187 VMLFSATFPISVKDFSDKNMTSPYEINLMDELTLRGI-TQYYAYVEEKQKVHCLNTLFSK 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       +++QQ R+      R+G  R  + +
Sbjct: 246 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCS 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 306 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIER 365

Query: 362 EANVSVVWEP 371
           +    +   P
Sbjct: 366 DLGTEIQPIP 375


>gi|307135861|gb|ADN33729.1| helicase [Cucumis melo subsp. melo]
          Length = 413

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 ----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   +++  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +    +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 IIEELPA 407


>gi|326933365|ref|XP_003212776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Meleagris
           gallopavo]
 gi|82197804|sp|Q5ZKB9|DDX6_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|53131507|emb|CAG31824.1| hypothetical protein RCJMB04_11n24 [Gallus gallus]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|148229654|ref|NP_001084230.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus laevis]
 gi|8163810|gb|AAF73861.1|AF218580_1 p68 RNA helicase [Xenopus laevis]
          Length = 608

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 184/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + EA+  + +   T +Q       L   D++  A TGSGKT+++ L     +  +
Sbjct: 98  SFPANVMEAIKRQNFTEPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 158 -PFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V +NI +     + +I     +    ++D+ +V ++    +
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDDKLVRLMEEIMS 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +         ++   L  
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++       VE 
Sbjct: 457 VLREANQAINPNLLQLVED 475


>gi|315633657|ref|ZP_07888947.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
 gi|315477699|gb|EFU68441.1| ATP-dependent RNA helicase RhlB [Aggregatibacter segnis ATCC 33393]
          Length = 432

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 198/390 (50%), Gaps = 14/390 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P   ++ +AL+++G+   T +Q   L   LR KDV   AQTG+GKT+AF  AL   
Sbjct: 25  FADFPLHPLVLQALNDKGFEFCTPIQALSLPVTLRGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL      +  + P AL +APTRELAVQ+  + +     T    A+  GG    ++ + +
Sbjct: 85  LLTH-PTETDKNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAI 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           +NG  +++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +       P++
Sbjct: 144 ENGVDVLIGTTGRVIDYVKQGIIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQ 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   V I  E +    I       +  D+   ++ +L
Sbjct: 204 RLTMLFSATLSYKVRELAFEDMNDPEYVEIEPEQKTGQQIKEELFYPSNQDKIPLLLTLL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 264 EEEWPERCIIFANTKHQCEAIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 324 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
                 S+          + + D   +LQD
Sbjct: 384 EEYIGHSIP---------VSQYDPNALLQD 404


>gi|218199270|gb|EEC81697.1| hypothetical protein OsI_25294 [Oryza sativa Indica Group]
          Length = 639

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 195/382 (51%), Gaps = 18/382 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + E +    YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++  
Sbjct: 176 DLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRS 235

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  + ++ R+L
Sbjct: 236 RPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLREL 295

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I++       
Sbjct: 296 ERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPR 355

Query: 181 ---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + ++FSAT    I  +A ++  D + + +         I  R   V  +D+ + +++
Sbjct: 356 GERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMD 415

Query: 238 ILRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +L    A          +VF  T+         L  + F   ++ G+ +QQER  AL+  
Sbjct: 416 LLHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSF 475

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     +
Sbjct: 476 KSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 535

Query: 351 N---MQRRAERLFREANVSVVW 369
           +   + R    L +EAN  V  
Sbjct: 536 SNTPLARPLSELMQEANQEVPQ 557


>gi|194745552|ref|XP_001955251.1| GF16329 [Drosophila ananassae]
 gi|190628288|gb|EDV43812.1| GF16329 [Drosophila ananassae]
          Length = 784

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 186/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 284 ITSFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPI 343

Query: 59  ASTLLAENDRFSP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P            PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 344 LNQMYEHGHSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 403

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 404 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 463

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 464 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 523

Query: 226 VALSDRDNAIV-------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + ++       N   Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 524 VYEQDKRSYLLDLLSSIRNGPEYCKDNLTLIFVETKKGADSLEEFLFQCNHPVTSIHGDR 583

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 584 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 643

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 644 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 676


>gi|153837953|ref|ZP_01990620.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|260902800|ref|ZP_05911195.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|149748644|gb|EDM59503.1| RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308108629|gb|EFO46169.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
          Length = 411

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 188/376 (50%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++  GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-------QRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++        + R   L
Sbjct: 306 GIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +   V  +P P
Sbjct: 366 LERVEIEGFVPRKPVP 381


>gi|153000529|ref|YP_001366210.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365147|gb|ABS08147.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 467

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +QE  +   L+ K++L  AQTG+GKT +F L +   + A+ 
Sbjct: 8   LSNPILRAITELGYSQPTPIQEKAIPVILKGKNLLAGAQTGTGKTASFVLPILQ-MFADM 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKI-RAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQSLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + 
Sbjct: 186 ATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLGHI 365

Query: 367 VVWEPA 372
           +V +  
Sbjct: 366 IVRKEI 371


>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 483

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 187/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFVEYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVETLVLDEADRMLDLGFARELNAVFAALPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  +A    ++ V ++++  N   S I    V V   ++    ++++  +  ++A+
Sbjct: 189 FTDDIRAMAATILRNPVNISVSPPNTTASRIKQWVVPVDKRNKPELFMHLVAENKWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TRA V     +L E  + V  + G+  Q  R  AL+  +    ++ +ATDVAARG+
Sbjct: 249 VFVKTRAGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKARDVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL +VI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPMVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIGKTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|302911254|ref|XP_003050452.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
 gi|256731389|gb|EEU44739.1| hypothetical protein NECHADRAFT_71876 [Nectria haematococca mpVI
           77-13-4]
          Length = 688

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 191/380 (50%), Gaps = 18/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S      
Sbjct: 204 LDEHLCRNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQAFING 263

Query: 67  DRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               PA+A           P +L +APTREL  Q+  E      ++ V   V  GG  + 
Sbjct: 264 PSPVPANAAGQFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVYGGADIG 323

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--- 172
            + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I   
Sbjct: 324 SQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEG 383

Query: 173 -LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
               S + R+ LMFSAT    I  LA+++ KD V +++        +I  +   V   D+
Sbjct: 384 EDMPSTQDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYVEDVDK 443

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  AL+  R
Sbjct: 444 RSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFR 503

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++     + 
Sbjct: 504 NGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRG 563

Query: 352 MQ---RRAERLFREANVSVV 368
            +   R    L +EAN  + 
Sbjct: 564 NRGVVRELMELLKEANQEIP 583


>gi|330502250|ref|YP_004379119.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916536|gb|AEB57367.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 441

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 182/375 (48%), Gaps = 3/375 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A + P L  KD+ V AQTGSGKT AF L L + LL + 
Sbjct: 7   LHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNRLLGDG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +      +  AL + PTRELA Q  +E+E     T +   +  GG     +   +     
Sbjct: 67  NSKQRL-SIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQ-AAMMRKID 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL +H     L +  ++ +V DEAD MLD+GF +D + + ++    + +L  +
Sbjct: 125 ILIGTPGRLIEHANAGNLPLDEVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTLLFSA 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            T    +  +     K+   + + S ++                 ++  +  +L      
Sbjct: 185 TTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNYHKEQLVDWLLANETYD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +TR    R    L     +   L GE  Q++R  A++ +R G  RV +ATDVAA
Sbjct: 245 KAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVRVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G++V +I          + R    
Sbjct: 305 RGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAVSLICHTDWNLMSSIERYLKQ 364

Query: 366 SVVWEPAPSVEAIRE 380
                    ++ + +
Sbjct: 365 RFERRTIKELKGVYQ 379


>gi|294651664|ref|ZP_06728967.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|292822443|gb|EFF81343.1| ATP-dependent RNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 647

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 156/598 (26%), Positives = 245/598 (40%), Gaps = 39/598 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTTPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       +R    + P  L I+PTRELA QV ++          V    I G  
Sbjct: 63  NALAGQETFVPFKERMKAVTQPTILVISPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFAEDLEAIG 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  + + LMFSAT +  I  LA+    D  R+ I + +  ++D+            + 
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G +V +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAVTLATYRE 362

Query: 353 QRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + +   L    +  +       +E      R  +             G +          
Sbjct: 363 RGKIRALEDYLDARLNVSEIEGLEPSPPPARSGRDGGGRGRSGRDGGGRDGGGRGRGGFG 422

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS--SW 468
                   G  +    G   P           R  F  + R  +     R   +G     
Sbjct: 423 GGRRFEGEGNFKRREGGDDRPRRSFDDKPRGERPSFGGEDRPRREFNSDRPRREGGFEDR 482

Query: 469 FSLSVGSKQKAEARWLMPMLCR-----SSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                 S      R       R     +S   R+  G    +P  +F      G D  RR
Sbjct: 483 PRREFNSD---RPRREGGFEDRPRREFNSDRPRRE-GGFDDRPKRSF-----GGEDRPRR 533

Query: 524 TVKLDKGIQLKYLG------------GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKG 569
               D+  +                 G + D++  +   F  +  +D   +  +R  G
Sbjct: 534 EFNSDRPRREGGFNDKPRFDSNDDNRGNRVDYKPRREGSFGDRPKRDFGDRPQQREGG 591


>gi|109478564|ref|XP_234443.4| PREDICTED: DEAD-box protein abstrakt-like [Rattus norvegicus]
          Length = 621

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 192/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 179 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIG 298

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GVS+  +   +++G HI+V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 299 GVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 359 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 418

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 419 KMVYLLECLQKTPPP-VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 477

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 478 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 537

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 538 ACDESVLMDLKALLLEAKQKVPP 560


>gi|330977878|gb|EGH77781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 445

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +TRA   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTRAMADRLYCRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|323453004|gb|EGB08876.1| Apo-Eif4aiii [Aureococcus anophagefferens]
          Length = 395

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 191/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +   G+   +++Q+  + P +  +DV+  +Q+G+GKT  F +A+
Sbjct: 21  IDSFEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAM 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       S  +    L I+PTRELA Q  +    L     V    CIGG S+  + 
Sbjct: 81  LQVLE------SATNETQMLTISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDI 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  IV GTPGR+ D I+ + L   +LK +V+DEADEML+ GF++ I  I    P 
Sbjct: 135 RRLDYGVQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPP 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  + + +  + VRV +  +      I    V +     + + + +
Sbjct: 195 STQVVLISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCD 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V      + E  F V A+ G++ Q+ER   +   R G +RV
Sbjct: 255 LYDTLTITQAVIFCNTKRKVDWLANKMREANFTVSAMHGDMPQRERDAIMAEFRGGASRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+  RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 315 LIATDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILR 374

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 375 DIEQYYSTQIDEMPMNVADLI 395


>gi|157376984|ref|YP_001475584.1| ATP-dependent RNA helicase DbpA [Shewanella sediminis HAW-EB3]
 gi|157319358|gb|ABV38456.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 458

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  + 
Sbjct: 8   LKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 68  FRI------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+  + L++  +  +VLDEAD ML++GF  D+++I+   P++R+ L+F
Sbjct: 122 HIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+    + V V + S +   S   +   + +  DR  A+  +L  H  +
Sbjct: 182 SATFPKQIQKIAEEIMYEPVMVKVTSTHDSSSIDQHFYQIDSNKDRQKALRLLLLQHRPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 242 SAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++VI+ E + + E  +HR GRTGRAG KG +      +   + + L    + 
Sbjct: 302 RGLDIEALDMVINYEFAFDTEVHIHRIGRTGRAGSKGAAFTFYTYDDDYKIKLLEEYLDH 361

Query: 366 SVVWEPAP 373
            +V E  P
Sbjct: 362 DIVSEGLP 369



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L    GI    +G I++    ++V V           +
Sbjct: 383 MVTLQIDGGKKHKVRPGDILGALTGEDGIQGSEVGKIKITEFRSYVAVDRKVAKRALHKI 442

Query: 526 KLDK 529
              K
Sbjct: 443 TNGK 446


>gi|24642151|ref|NP_573020.2| CG6227 [Drosophila melanogaster]
 gi|7293060|gb|AAF48446.1| CG6227 [Drosophila melanogaster]
 gi|54650792|gb|AAV36975.1| LD41277p [Drosophila melanogaster]
 gi|220951960|gb|ACL88523.1| CG6227-PA [synthetic construct]
 gi|225579871|gb|ACN94142.1| unknown [Drosophila melanogaster]
 gi|225579880|gb|ACN94150.1| unknown [Drosophila melanogaster]
 gi|225579907|gb|ACN94174.1| unknown [Drosophila melanogaster]
 gi|225579925|gb|ACN94190.1| unknown [Drosophila melanogaster]
 gi|225579943|gb|ACN94206.1| unknown [Drosophila melanogaster]
 gi|225579970|gb|ACN94230.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|324502932|gb|ADY41281.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 435

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ +     
Sbjct: 39  FEDFCLKRDLLMGIFEKGWEKPSPIQEASIAIALSGQDILARAKNGTGKTGAYCIPCIEK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + +E  +        AL + PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 99  IDSELKKI------QALIVVPTRELALQTSQICVELSKHLKLKVMVTTGGTDLRDDIMRL 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VV TPGR+ D +     ++S    ++LDEAD++L   F+  ++ ++   P +R+
Sbjct: 153 NGVVHLVVATPGRILDLMDKGVADMSRCSTLILDEADKLLSQDFQGILDRVIKFLPSERQ 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    + T  + + K+   +N+  E             V    + + +  + R 
Sbjct: 213 IMLYSATFPLTVATFMQKHMKNPYEINLMEELTLLGV-TQFYAYVQEKQKVHCLNTLFRK 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++Q  R+      R G  R  + +
Sbjct: 272 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRQGNCRNLVCS 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+  
Sbjct: 332 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFTLRRIEA 391

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 392 ELRTHIAPIP 401


>gi|225579844|gb|ACN94118.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|168056517|ref|XP_001780266.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668320|gb|EDQ54930.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 397

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 192/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   +   G+   +++Q+  + P +  +D +  AQ+G+GKT    LA+
Sbjct: 23  ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALAV 82

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  + +  +     V    CIGG S+  + 
Sbjct: 83  CQMID------TATREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDI 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+ D I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 137 RKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPP 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 197 ELQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 257 LYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRV 316

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 317 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILR 376

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 377 DIEQYYSTQIDEMPMNVADLI 397


>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
 gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 569

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 197/378 (52%), Gaps = 10/378 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + GY + T +Q       L  +D++  A+TGSGKT+ F +  
Sbjct: 73  MLKFSDLVAPDTIHQAFIDLGYKSPTPIQSIAWPILLNSRDLVGVAKTGSGKTMGFMVPA 132

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRE 117
           A  ++A+         P+AL +APTRELAVQ+  E   +  +   +  A   GG     +
Sbjct: 133 ALHIMAQPP-IRVGEGPIALVLAPTRELAVQIEEETRKVLRRVPTITTACLYGGTPKGPQ 191

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 192 IRALRAGVHVCIATPGRLIDLLEIRAANLLRVTFLVLDEADRMLDMGFEVQIRKICQQIR 251

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
           K R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+     +V   D+   + 
Sbjct: 252 KDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLIANADVTQHVSVVEDYDKQRRLE 311

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAE-HLFQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L       V+A+ G+  Q +R   L   R    
Sbjct: 312 EILQKVGKQRVLIFVKTKRTADSLHHSLQRLIGGSVMAIHGDKEQSQRDYVLDRFRRDER 371

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P  
Sbjct: 372 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYTFVSGADPSK 431

Query: 352 MQRRAERLFREANVSVVW 369
             R    + R AN  +  
Sbjct: 432 TVRDLIDILRRANQEIPP 449


>gi|72546967|ref|XP_843148.1| ATP-dependent DEAD-box RNA helicase [Leishmania major strain
           Friedlin]
 gi|323363662|emb|CBZ12667.1| putative ATP-dependent DEAD-box RNA helicase [Leishmania major
           strain Friedlin]
          Length = 405

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 176/372 (47%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +   
Sbjct: 32  FEEYALRRELQMGIFEKGFEKPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLEK 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +       +      AL + PTRELA+Q  +  + L     G+ V V  GG ++  +   
Sbjct: 92  VD------TRELYVQALLMVPTRELALQTAQVTKELGKHIPGLEVMVTTGGTTLRDDILR 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  HI+V TPGR+ D    K +++SH   +VLDEAD++L   F + I+ +    P + 
Sbjct: 146 LTSKVHILVATPGRVLDLASKKAVDLSHCHILVLDEADKLLSQEFMEIIDDLYTYLPSQL 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    + T A+ +  +   +N+  E             V    + + +  +  
Sbjct: 206 QSMLFSATFPVTVKTFAERHLHNPYEINLMDELTLKGV-TQYYAFVEERQKIHCLNTLFN 264

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  + 
Sbjct: 265 KLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLVC 324

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+ 
Sbjct: 325 SDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGVAINFVTYDDRYNVYRIE 384

Query: 361 REANVSVVWEPA 372
           +E +  +   PA
Sbjct: 385 QELDTEIKPIPA 396


>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
          Length = 430

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/413 (30%), Positives = 212/413 (51%), Gaps = 6/413 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L   G      +QE  +   L+  D+L  AQTGSGKT+AF L + + +LA  
Sbjct: 14  LSSLLVKNLFIAGMHKPKLIQERAIPVMLKGHDILGIAQTGSGKTLAFSLPILNRILALG 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D+  P +A  AL + PTRELA+Q+   +  +   T +   + +GG+S   + R +  G  
Sbjct: 74  DKRHPKTA-RALILVPTRELAIQIEEAISAVAKGTHLSTCLILGGMSRLTQIRRMAKGVD 132

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D IR K +++S  +  +LDEAD MLD+GF +D+  I +   KK +  +FS
Sbjct: 133 ILVATPGRLIDLIRSKYVDLSKSRFFILDEADRMLDMGFINDVRQIANFLHKKCQTALFS 192

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LA N  K  V++ + S+    ++I      V+ S++ + +  +L      +
Sbjct: 193 ATMSKEVNVLADNLLKKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLLTNPALAS 252

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + LA+  + V  + G  SQ  R  AL+  R+G  RV +ATD+AAR
Sbjct: 253 VIVFIRTKHGADSVARSLAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLVATDIAAR 312

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERLFREANV 365
           GID+P +  VI+ +L  N E+ +HR GRTGR    G ++ +  +   Q R   + R   +
Sbjct: 313 GIDIPRISHVINYDLPDNAESYVHRIGRTGRNSASGDAITLFDEKIEQVRLCAIERLIRM 372

Query: 366 SVVWEPAP-SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +  +  P    ++ E+ A+         +  +    +        +  +KIA
Sbjct: 373 KITRKEIPLQFASLPEKLAE---PKIYKREGSKKRHLREFKDRENLNSTDKIA 422


>gi|262373548|ref|ZP_06066826.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
 gi|262311301|gb|EEY92387.1| DEAD/DEAH box helicase [Acinetobacter junii SH205]
          Length = 642

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 160/595 (26%), Positives = 244/595 (41%), Gaps = 44/595 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ + T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTSPTPVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  NALTGQETFVPFKERMKAITQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA ++V TPGRL D +  + L +  ++++++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVESLIVDEADRMLDLGFSEDLEAIG 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  + + LMFSAT +  I  LA+    D  R+ I + +  ++D+            + 
Sbjct: 183 ELAANRNQTLMFSATFADRIIRLAERMMNDPQRIAIETGHSTNTDVTQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSDESVDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKNEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFR----EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           + +   L        NVS +    PS    R                 +G          
Sbjct: 363 RGKIRALEDYLDARLNVSEIEGLEPSPPPARSGRDGGGRGRGGRDGGGRGRGGFGGGRRF 422

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-- 466
                        +  + G   P           R  F  + R  +     R   +G   
Sbjct: 423 EGESN-------FKRRKGGDDRPRRSFDDKPRGERPSFGGEDRPRREFNSDRPRREGGFE 475

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRS--------SGINRQSIGAIRVQPDLTFVEVSADGV 518
                +     K   R   P             S   R+  G    +P  TF      G 
Sbjct: 476 DRPRRNF--DDK--PRGERPSFGGEDRPRREFNSDRPRRE-GGFDDRPKRTF-----GGE 525

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           D  RR    D+    +  GG   D   + S+     N  D   +R   F    K 
Sbjct: 526 DRPRREFNSDRP---RREGGYN-DKPRFDSNDDNRGNRVDYKPRREGSFGDRPKR 576


>gi|281182808|ref|NP_001162410.1| probable ATP-dependent RNA helicase DDX43 [Papio anubis]
 gi|163781000|gb|ABY40781.1| DEAD box polypeptide 43 (predicted) [Papio anubis]
          Length = 648

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/396 (27%), Positives = 187/396 (47%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + + + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L 
Sbjct: 247 FQCYPE-VMKNIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPTLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRY 241
           M SAT             ++  +      +    S +    ++    ++  +    +   
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNM 484

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|15604513|ref|NP_221031.1| putative ATP-dependent RNA helicase RHLE (rhlE) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861207|emb|CAA15107.1| PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE) [Rickettsia
           prowazekii]
 gi|292572297|gb|ADE30212.1| ATP-dependent RNA helicase RhlE [Rickettsia prowazekii Rp22]
          Length = 407

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 194/364 (53%), Gaps = 10/364 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFI--------KNKTTALILVPTRELATQIHSTLNKVTTAYKMNSAVLIGGEPMFKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ +H+  + L I H+  +VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I    + V+  ++ +  +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R   +   R    R+ +A
Sbjct: 231 GNRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAID 350

Query: 361 REAN 364
           R  N
Sbjct: 351 RLVN 354


>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
          Length = 971

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 19/390 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE  N P+ +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L   
Sbjct: 267 QSFEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 326

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
             +  +    +    P+ L +APTRELA Q+   +      +   +      GG     +
Sbjct: 327 VHISHQKP-LTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALKGPQ 385

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 386 VRDLERGVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRMLDMGFEPQIRKIVEQIR 445

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R++LM+SAT    + TLA+++ +D +++NI S +   +   ++ V V   +   + + 
Sbjct: 446 PDRQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKESKLL 505

Query: 238 ILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L    A        I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R 
Sbjct: 506 KLLKEIASTDASNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRH 565

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N 
Sbjct: 566 GKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYSFFTPNN 625

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIR 379
            R+A  L     EA         P+VE + 
Sbjct: 626 GRQARELLSVLEEAGQQ------PTVELVE 649


>gi|258566652|ref|XP_002584070.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
 gi|237905516|gb|EEP79917.1| ATP-dependent RNA helicase ded1 [Uncinocarpus reesii 1704]
          Length = 670

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 190/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 179 VTTFTNPPLDDHLISNIKLASYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 238

Query: 59  ASTLLAENDRFSPAS-------------APLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S          P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 239 LSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 298

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 299 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 358

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 359 EPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 418

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HG    ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 419 KVEYVEDNDKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+ R  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 479 ERERALEYFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 538

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 539 GLSTAFFNRGNRGVVRDLIELLKEAHQEVP 568


>gi|242215165|ref|XP_002473400.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
 gi|220727497|gb|EED81414.1| eukaryotic translation initiation factor 4A-like protein [Postia
           placenta Mad-698-R]
          Length = 501

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/365 (25%), Positives = 166/365 (45%), Gaps = 7/365 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   + E G+   + +QE  +   L ++DVL  A+ G+GKT AF +     +    
Sbjct: 50  LRRELLMGIYEAGFEKPSPIQEEAIPIALTKRDVLARAKNGTGKTAAFVIPSLQQVDITK 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+Q  +  + L    GV V V  GG ++  +   L    H
Sbjct: 110 NKI------QALLLVPTRELALQTSQVCKILGKHMGVQVMVTTGGTTLKDDIIRLSETVH 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   PK R++++FS
Sbjct: 164 VLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSYLPKDRQVMLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +      + K    +N+  E             V    + + +  +        
Sbjct: 224 ATFPLIVKDFKDKHMKSPYEINLMDELTLRGV-TQYYAYVEERQKVHCLNTLFSKLQINQ 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +D+  R
Sbjct: 283 SIIFCNSTNRVELLAKKVTELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  + +VI+ +   N E  LHR GR+GR G  G+++ ++    +    ++ +E    
Sbjct: 343 GIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQELGTE 402

Query: 367 VVWEP 371
           +   P
Sbjct: 403 IQPIP 407


>gi|91794299|ref|YP_563950.1| ATP-dependent RNA helicase DbpA [Shewanella denitrificans OS217]
 gi|91716301|gb|ABE56227.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 470

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 136/401 (33%), Positives = 213/401 (53%), Gaps = 11/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + E L   GY ++T +Q   L P L   DV+   +TGSGKT AFGL L + L  +
Sbjct: 20  SLKTELLENLKTMGYESMTQIQAQSLPPILAGDDVIGQGKTGSGKTAAFGLGLLNKLDVK 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GGV +  +   L++G
Sbjct: 80  RFRI------QTLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQVGSLEHG 133

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    L++S++  +VLDEAD ML++GF+D I+ I++ +P++R+ L+
Sbjct: 134 AHIIVGTPGRIIDHLDRNRLDLSNVNMLVLDEADRMLEMGFQDHIDAIIEQTPRERQTLL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++A       V V + S +   S   +   L     R  A+  +L     
Sbjct: 194 FSATFPDQIKSIADEIMYKPVMVKVESTHDAISIEQHFYQLEDNKSRLEALRLLLLSEQP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+    +    LAE  F V+AL G+L Q++R   L    +  AR+ +ATDVA
Sbjct: 254 ESAVVFCNTKRETQQVADELAEFGFSVLALHGDLEQRDRDQMLLQFANQSARILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ V +  L+ + E  LHR GRTGRAG  G +   I  +   +   +    N
Sbjct: 314 ARGLDIDALDAVFNFHLAYDAEVHLHRIGRTGRAGSTGAAYSFIGHDDGYKVAMIEEMLN 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +V E  P +  + +      L   +    I+G +K+ + 
Sbjct: 374 IEIVTEALPGLNVLNKT----PLAANMVTIQIEGGKKQKIR 410



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +  G KQK     ++  L   +G++   IG I+V     +V V  +  +  +  
Sbjct: 395 NMVTIQIEGGKKQKIRPGDIVGALTGDNGLDANDIGKIKVTDIRAYVAVKRNVSN--QAL 452

Query: 525 VKLDKGI 531
            KL+KG 
Sbjct: 453 NKLNKGK 459


>gi|115471073|ref|NP_001059135.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|75325411|sp|Q6Z4K6|RH52B_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; AltName:
           Full=OsPL10b
 gi|34393986|dbj|BAC83834.1| putative DEAD-box RNA helicase DEAD3 [Oryza sativa Japonica Group]
 gi|113610671|dbj|BAF21049.1| Os07g0202100 [Oryza sativa Japonica Group]
 gi|222636630|gb|EEE66762.1| hypothetical protein OsJ_23477 [Oryza sativa Japonica Group]
          Length = 638

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/382 (30%), Positives = 195/382 (51%), Gaps = 18/382 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + E +    YV  T VQ   +   +  +D++  AQTGSGKT AF   + S ++  
Sbjct: 175 DLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMRS 234

Query: 66  ND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R S  + PLAL ++PTREL+VQ+  E      +TGV V V  GG  + ++ R+L
Sbjct: 235 RPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLREL 294

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + G  I+V TPGRL D +    +++  +K + LDEAD MLD+GF   I  I++       
Sbjct: 295 ERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPR 354

Query: 181 ---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + ++FSAT    I  +A ++  D + + +         I  R   V  +D+ + +++
Sbjct: 355 GERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLDADKRSYLMD 414

Query: 238 ILRYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +L    A          +VF  T+         L  + F   ++ G+ +QQER  AL+  
Sbjct: 415 LLHAQRANGTHGKQALTLVFVETKRGADALENWLYNNGFPATSIHGDRTQQEREYALRSF 474

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G   + +ATDVAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG+ G++     +
Sbjct: 475 KSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE 534

Query: 351 N---MQRRAERLFREANVSVVW 369
           +   + R    L +EAN  V  
Sbjct: 535 SNTPLARPLSELMQEANQEVPQ 556


>gi|225579817|gb|ACN94094.1| unknown [Drosophila melanogaster]
          Length = 1227

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 525 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 583

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 584 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 643

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 644 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 703

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 704 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 763

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 764 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 823

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 824 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 883

Query: 368 VWEPA 372
              PA
Sbjct: 884 TLIPA 888


>gi|225579772|gb|ACN94054.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|225579763|gb|ACN94046.1| unknown [Drosophila melanogaster]
 gi|225579781|gb|ACN94062.1| unknown [Drosophila melanogaster]
 gi|225579826|gb|ACN94102.1| unknown [Drosophila melanogaster]
 gi|225579835|gb|ACN94110.1| unknown [Drosophila melanogaster]
 gi|225579853|gb|ACN94126.1| unknown [Drosophila melanogaster]
 gi|225579862|gb|ACN94134.1| unknown [Drosophila melanogaster]
 gi|225579889|gb|ACN94158.1| unknown [Drosophila melanogaster]
 gi|225579898|gb|ACN94166.1| unknown [Drosophila melanogaster]
 gi|225579916|gb|ACN94182.1| unknown [Drosophila melanogaster]
 gi|225579934|gb|ACN94198.1| unknown [Drosophila melanogaster]
 gi|225579952|gb|ACN94214.1| unknown [Drosophila melanogaster]
 gi|225579961|gb|ACN94222.1| unknown [Drosophila melanogaster]
          Length = 1224

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|219686271|dbj|BAH08688.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Pagrus major]
          Length = 631

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 183/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +S+ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 195 IMTFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 254

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+      FS    P A+ +APTREL  Q+  E       T V   V  GGVS  
Sbjct: 255 LQQLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGVSTG 314

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + R+L  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF   +      
Sbjct: 315 YQIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRMLDMGFEPAMRRLVGS 374

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       +D++   V V    
Sbjct: 375 PGMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGVVGAACNDVEQTFVQVTKFS 434

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   + ++L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   
Sbjct: 435 KREQLFDLLKTTGTERTMVFVETKRQADFIATYLCQEKVPTTSIHGDREQRERELALADF 494

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+PD++ V++ +L  + +  +HR GRTGR G  G +V     
Sbjct: 495 RSGKCPVMVATSVAARGLDIPDVQHVVNFDLPKDIDEYVHRIGRTGRCGNTGRAVSFYDP 554

Query: 351 NMQRRAER----LFREANVSVV 368
               +  R    +  +A   V 
Sbjct: 555 EADGQLARPLVTILSKAQQEVP 576


>gi|194868558|ref|XP_001972305.1| GG13958 [Drosophila erecta]
 gi|190654088|gb|EDV51331.1| GG13958 [Drosophila erecta]
          Length = 786

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 274 FDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQR 333

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 334 Q-LKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 392

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFS
Sbjct: 393 IIVATPGRMIDMVKMKATNLRRVTYLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFS 452

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 453 ATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLCHLVKFLSE 512

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 513 GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 572

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 573 ARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 629


>gi|15215678|gb|AAK91384.1| AT3g19760/MMB12_21 [Arabidopsis thaliana]
 gi|25090064|gb|AAN72219.1| At3g19760/MMB12_21 [Arabidopsis thaliana]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 197/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  I + +   + E G+   +++Q+  + P L+ +DV+  AQ+G+GKT    L++
Sbjct: 34  ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    AL ++PTR LA Q  + ++ +     +    CIGG SV  + 
Sbjct: 94  CQVVD------TSSREVQALILSPTRGLATQTEKTIQAIGLHANIQAHACIGGNSVGEDI 147

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 148 RKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPP 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ + SAT+   I  +   +  + V++ +  +      I    V +     + + + +
Sbjct: 208 DLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 267

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   ++ +  H F V ++ G++ Q+ER   +   R G +RV
Sbjct: 268 LYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRV 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 328 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILR 387

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 388 DIEQYYSTQIDEMPMNVADLI 408


>gi|77359594|ref|YP_339169.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76874505|emb|CAI85726.1| putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein
           family [Pseudoalteromonas haloplanktis TAC125]
          Length = 432

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 127/403 (31%), Positives = 206/403 (51%), Gaps = 20/403 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F   N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L 
Sbjct: 21  TTFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLL 80

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +  P  A   + + PTRELA QV    E     T +  A+  GG S+  + +
Sbjct: 81  HKLLNTPKKDEPGVA-RVVILTPTRELAQQVFASFEKYAQGTNIKGALAYGGASIGPQIK 139

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L   A ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I+ IL   P  
Sbjct: 140 AL-KDAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGD 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   ++  L+K   K+   V +   N    +++     V    +   + +++
Sbjct: 199 RQTLLFSATFDDSVFALSKKLLKNPELVEVDKRNSAAVEVEQVIYSVDEDRKRELVSHMI 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +
Sbjct: 259 GMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLV 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P L  VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E +
Sbjct: 319 ATDVAARGLDIPTLRFVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEI 378

Query: 360 FREANVSVV------WEPAP----------SVEAIRERDAQRI 386
               +  +       +EP P          + ++ ++RD +RI
Sbjct: 379 EVLLDTRLTPQWLAGYEPDPNKKPKDNRKNTNKSRKDRDKKRI 421


>gi|62289973|ref|YP_221766.1| DEAD-box ATP dependent DNA helicase [Brucella abortus bv. 1 str.
           9-941]
 gi|82699901|ref|YP_414475.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024215|ref|YP_001934983.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|254689280|ref|ZP_05152534.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 6 str. 870]
 gi|254693764|ref|ZP_05155592.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 3 str. Tulya]
 gi|254697417|ref|ZP_05159245.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730315|ref|ZP_05188893.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 4 str. 292]
 gi|256257530|ref|ZP_05463066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Brucella
           abortus bv. 9 str. C68]
 gi|297248372|ref|ZP_06932090.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
 gi|62196105|gb|AAX74405.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616002|emb|CAJ11028.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
           C-terminal:ATP/GTP-binding site motif A (P-loop)
           [Brucella melitensis biovar Abortus 2308]
 gi|189019787|gb|ACD72509.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
           S19]
 gi|297175541|gb|EFH34888.1| ATP-dependent helicase [Brucella abortus bv. 5 str. B3196]
          Length = 531

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 215/452 (47%), Gaps = 20/452 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
            + AP           ++   P+         K            E   A   +  R   
Sbjct: 456 IKDAPV----------KLAPAPVA--------KGPAPQGQRTEQAESRKAPAHKHRRPAQ 497

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            A E+    +  S  +      R F+  GG R
Sbjct: 498 KAGEQHRAGAHASAGEAAPKPKRPFRSNGGQR 529


>gi|71421123|ref|XP_811713.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70876408|gb|EAN89862.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 622

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 10/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F ++  P  I ++  + GY   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 69  MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E   +  +   +   C+ G +    +
Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+    ++V   D+   + 
Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L       V+A+ G+  Q +R   L   R    
Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P  
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427

Query: 352 MQRRAERLFREANVSVVWE 370
             R    L R AN  V  E
Sbjct: 428 TIRDLVDLLRRANQEVPPE 446


>gi|311279320|ref|YP_003941551.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308748515|gb|ADO48267.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 457

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 205/378 (54%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P+     L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A            +L + PTRELA QV   L  L      +  + + G      
Sbjct: 61  LLQHIDASQ------FITQSLVLCPTRELADQVASALRKLARFMPNIKVLTLCGGLPFSV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HI+V TPGRL DH++ + +++  L+ +VLDEAD MLD+GF D ++ ++  +
Sbjct: 115 QRDSLTHAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADALDEVIAWA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR+ L+FSAT    I  +++  Q+D + +       +   ++ R   V+ S +   + 
Sbjct: 175 PEKRQTLLFSATWPAEIAAISRRIQRDPLTI-EIDTVDELPAVEQRFYEVSRSGKIGLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L++    V+AL G++ Q++R   L    +G +R
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALSDSNQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG +G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    NV + W+P P+
Sbjct: 354 NALEEMLNVKLDWQPLPN 371



 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +      + D +   
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGERGLAISLCAPEEAQRANALEEMLNVKLDWQPLP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G++   IG I + P   +V V 
Sbjct: 371 NGVRIAPLEAAMATLCIDGGKKAKMRPGDILGALTGELGLDGADIGKIDIHPIHAYVAVR 430

Query: 515 ADGVDL----LRRTVKLDKGIQLKYL 536
                     L++     K ++++ L
Sbjct: 431 QSVARHAWKQLQQGKIKGKTVKVRLL 456


>gi|219113631|ref|XP_002186399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583249|gb|ACI65869.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 414

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   +P+ +   +   G+   +++Q+  + P +  KD++  AQ+G+GKT  F +  
Sbjct: 40  IESFDAMELPEELLRGIFSYGFEKPSAIQQRAIKPTILAKDLIAQAQSGTGKTATFAIGT 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L  +           AL +APTRELA Q+ + +  L     + V  C+GG +V  + 
Sbjct: 100 LARLDPK------LRECQALILAPTRELAQQIQKVVLALGDYMDIQVHACVGGTAVRDDI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ G H+VVGTPGR+ D I  + L +  ++   LDEADEML  GF+D I  I    P+
Sbjct: 154 RTLQAGVHVVVGTPGRVFDMINRRALRLDSIRQFFLDEADEMLSRGFKDQIYDIFKFLPE 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   +  + + + ++ VR+ +  +      I    + +     +   + +
Sbjct: 214 TVQVCLFSATMPLDVLEVTERFMREPVRILVKKDELTLEGIKQFYISVDKEDWKLETLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V    + + +  F V  + G++ Q+ER   ++  R G +RV
Sbjct: 274 LYETLTITQAIIYCNTRRKVDWLQEEMQKRDFTVSCMHGDMDQRERDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  + +   R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINFDLPTNRENYIHRIGRSGRFGRKGVAINFLTEADVRYLR 393

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +     +   P+   +
Sbjct: 394 DIEQFYTTEITEMPSDVAD 412


>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 419

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 201/371 (54%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+  ++  + YV+ T VQ   +   L   D+LV AQTG+GKT AF + L   LL +
Sbjct: 16  NLHPVLLASIKAQSYVDPTPVQRQAIPEILLGHDLLVGAQTGTGKTAAFAIPLVHKLLMQ 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           ++          L + PTRELA+QV   +  L   T +  A+  GG S+  + R  + G 
Sbjct: 76  SEEAHQGKVIKGLILTPTRELALQVQHNIHALLQGTELKHAIAYGGASIGEQVRSFKAGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH+R K +++ H++ +V DEAD MLD+GF+D+I  +L   PK+R+ L+F
Sbjct: 136 DILVATPGRLLDHLRHKAVSLKHVEYLVFDEADRMLDMGFKDEIVDLLKRLPKQRQTLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++ +I + +KN   +   + +A  N + + I+ R   V    + + + ++L     +
Sbjct: 196 SATLNDSIFSFSKNLLNEPKVIEVAKANTKVAKIEERVYCVDEERKLSLLCHLLSKERWQ 255

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+         + +   + +A  G+LSQ  R + L+     + +V +ATDVAA
Sbjct: 256 QVLVFSRTKQGADNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQVLVATDVAA 315

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL  V++ EL    E+ +HR GRTGRAG+ G++V +       +   L    + 
Sbjct: 316 RGLDIEDLNYVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTLFAIEDTAKLMSLETLLDR 375

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 376 RLPQQWYPGFE 386


>gi|302782918|ref|XP_002973232.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
 gi|300158985|gb|EFJ25606.1| hypothetical protein SELMODRAFT_267628 [Selaginella moellendorffii]
          Length = 597

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 188/375 (50%), Gaps = 17/375 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E +    +V  T VQ   +   L  +D++  AQTGSGKT+AF   + + +L +  R  
Sbjct: 161 LDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQR 220

Query: 71  PAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P      PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  +  + R+L+ G  I
Sbjct: 221 PRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDI 280

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----LDSSPKKRRML 183
           +V TPGRL D +    + +S +K + LDEAD MLD+GF   I  I        P +R+ +
Sbjct: 281 LVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTM 340

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +FSAT    I +LA ++  + + + +         I  R   V  +++ + +++I+    
Sbjct: 341 LFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDIIHGQK 400

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      +VF  T+         L    F    + G+ +Q ER  AL+  R G   
Sbjct: 401 AIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTP 460

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG  G++           A
Sbjct: 461 ILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLA 520

Query: 357 E---RLFREANVSVV 368
           +    L +E++  V 
Sbjct: 521 KPLAELMQESSQEVP 535


>gi|297850038|ref|XP_002892900.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338742|gb|EFH69159.1| hypothetical protein ARALYDRAFT_471825 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 487

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 124/422 (29%), Positives = 206/422 (48%), Gaps = 21/422 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +   +   E   E G    T VQ   +   L  +DVL  AQTGSGKT AF L +   
Sbjct: 56  FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 115

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +           AL + PTRELA Q+  + + L +   +  +V +GG+ +  + R L
Sbjct: 116 LAEDP------YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTRSL 169

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNIS---HLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +  HIV+ TPGR+   +             K +VLDEAD +LD+GF+D++  I    PK
Sbjct: 170 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT++  + TL ++    A         +    +  + +      ++  +V+I
Sbjct: 230 SRQTLLFSATMTSNLQTLLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHI 289

Query: 239 LRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L     K   +A++F ST  +  R + +L E   + VA+    SQ  R +AL   + G+ 
Sbjct: 290 LSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENVAMHSLNSQSMRLSALSKFKSGKI 349

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+P ++LVI+ ++  NP + +HR GRT RAGR G++V +I +   + 
Sbjct: 350 PILLATDVASRGLDIPTVDLVINYDIPRNPRDYVHRVGRTARAGRGGLAVSIITETDVKL 409

Query: 356 AERLFREANVSVVWEP----APSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLL 408
             ++  E    +          S+E  +   A+R+    +  +  +    D +K+    L
Sbjct: 410 IHKIEEEVGKKMEPYNNKIITDSLEVTKVSKAKRVAMMRMLDNGFEDKVKDRRKLKRKTL 469

Query: 409 AK 410
           A 
Sbjct: 470 AD 471


>gi|116787191|gb|ABK24405.1| unknown [Picea sitchensis]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   + + G+   +++Q+  + P +  +DV+  AQ+G+GKT    LA+
Sbjct: 34  ISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVMPIINGRDVIAQAQSGTGKTSMIALAV 93

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  + +  +     V    CIGG S+  + 
Sbjct: 94  CQIID------TSIREVQALIVSPTRELAAQTEKVILAIGDFINVQAHACIGGKSIGEDI 147

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P 
Sbjct: 148 RKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESDEMLSRGFKDQIYDVYRYLPP 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 208 ELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 267

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV
Sbjct: 268 LYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRAGTTRV 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 328 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILR 387

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 388 DIEQYYSTQIDEMPMNVADLI 408


>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
 gi|118595361|sp|Q0V1Z7|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
          Length = 808

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/414 (27%), Positives = 198/414 (47%), Gaps = 12/414 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I + L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL  
Sbjct: 291 SLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY- 349

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R             PTRELAVQ       L + T +  A+  GG S   +   L+   
Sbjct: 350 --RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRP 407

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++
Sbjct: 408 DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKSRQTML 467

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + ++      +    + +       R   ++ I   
Sbjct: 468 FSATMTSTVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEK 527

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   V A    +   L G +SQ++R  A++  R G++   +AT
Sbjct: 528 IYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSYLLAT 587

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +  ++  ++  +
Sbjct: 588 DVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVK 647

Query: 362 EA---NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           ++      VV    P  E  R  +  R L+D +  + +  +EK+   + + + D
Sbjct: 648 QSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEI--EDVLKEEKEERTLSITERD 699


>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
 gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
          Length = 910

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 193/390 (49%), Gaps = 19/390 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE  N P+ +   + ++G+   T++Q       L  +D++  AQTGSGKT+A+ L   
Sbjct: 225 QNFEEGNFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 284

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
             +  +    S    P+ L +APTRELA Q+   +      +   +      GG     +
Sbjct: 285 VHISHQKP-LSRGEGPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALKGPQ 343

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 344 VRDLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIR 403

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R++LM+SAT    + TLA+++ +D +++NI S +   +   ++ V V   +     + 
Sbjct: 404 PDRQVLMWSATWPKEVQTLAEDFLRDYIQINIGSLSLAANHNIHQIVDVCEENEKEGKLL 463

Query: 238 ILRYHGAK-----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            L    A        I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R 
Sbjct: 464 KLLKEIATSDATNKIIIFVETKKKVDDLLKNIVRDGYGATSIHGDKSQTERDYVLQDFRH 523

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR  + G +      N 
Sbjct: 524 GKSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSQYGTAYTFFTPNN 583

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIR 379
            R+A  L     EA         P+VE + 
Sbjct: 584 GRQARELLSVLEEAGQQ------PTVELVE 607


>gi|114608129|ref|XP_518584.2| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Pan
           troglodytes]
          Length = 648

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 191/396 (48%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L+
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLV 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPSLKGQKNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M +AT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 425 MTTATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNM 484

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A     +  L      V +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
 gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
          Length = 474

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +  I+F  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRL 435


>gi|239831927|ref|ZP_04680256.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239824194|gb|EEQ95762.1| DEAD/DEAH box helicase domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 470

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 195/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 32  ILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 91

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 92  RPKTA-RALILAPTRELAVQIEQTIRNVSKHAHISTALVLGGVSKLSQIKRIAPGIDVLI 150

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 151 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHSERQTALFSATM 210

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA +  +D VRV +A +    ++I      V   ++   +  +L     ++ IV
Sbjct: 211 PKEIASLAGSLLRDPVRVEVAPQGTTAAEITQVVHPVHTKEKRRLLSALLGDKAMRSVIV 270

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    ++V A+ G  SQ  R  AL   RDG  R+ IATD+AARGID
Sbjct: 271 FTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRALNGFRDGSLRILIATDIAARGID 330

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 331 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPAAEESKLRAVERVTRSKLP 390

Query: 369 WEPAP 373
            + AP
Sbjct: 391 IKDAP 395


>gi|157962845|ref|YP_001502879.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847845|gb|ABV88344.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 414

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 3/377 (0%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++P    +   L+++GY   T++Q   +   L  +D++ SAQTG+GKT AF L L  
Sbjct: 4   SFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLPLLQ 63

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL  +      S  P AL + PTRELAVQV   +      T +   V  GGVS+  +  
Sbjct: 64  RLLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDAQAT 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL DH+R   LN+S +  +V DEAD MLD+GF D+I  IL   P K
Sbjct: 124 KLAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRLPAK 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT S AI  L+K       R+ +   N     ++     V    +   I +++
Sbjct: 184 RQTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVEQIVYAVDSDRKTELICHLI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +     ++F   + +     + +     +  A  G+L Q  R   L   + G+ +  +
Sbjct: 244 KKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKIKALV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L+ V++ E+    E+ +HR GRTGRAG  G +V +  ++     E +
Sbjct: 304 ATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALLLEEV 363

Query: 360 FREANVSVVWEPAPSVE 376
               +  +  +  P  E
Sbjct: 364 ETVLDKRLAPQWLPGFE 380


>gi|327265659|ref|XP_003217625.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Anolis
           carolinensis]
          Length = 672

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 230 LKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 289

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+            +  A+CIG
Sbjct: 290 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLHEDGMPSLRCALCIG 349

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 350 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDVCRYLALDEADRMIDMGFEGDIR 409

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 410 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEA 469

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 470 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 528

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           RDG+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 529 RDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 588

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 589 ACDESVLMDLKALLLEAKQKVPP 611


>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
          Length = 408

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 104/377 (27%), Positives = 186/377 (49%), Gaps = 12/377 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + L 
Sbjct: 23  STFESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
             +              AL ++PTRELA Q+G+ ++ L     V   A+  G       +
Sbjct: 83  QAIDLRKKD------LQALILSPTRELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLK 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
           +  ++G   V GTPGR+ D I+ + L   +++ +VLDEADE+L     F+  I  I    
Sbjct: 137 KMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKL 196

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
           PK  ++++ SAT++  I  + + +  D V++ +  +      I      +     + + +
Sbjct: 197 PKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTL 256

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +I         ++FC+T+  V   ++ L +  F VV++ G++ Q+ER   +   R G +
Sbjct: 257 CDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHS 316

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV I+TDV  RGID+  + LVI+ +L    E  +HR GR+GR GRKG+++  I +    +
Sbjct: 317 RVLISTDVWXRGIDVQQVSLVINYDLPEIIEXYIHRIGRSGRFGRKGVAINFITKADLAK 376

Query: 356 AERLFREANVSVVWEPA 372
              + +  ++ +   PA
Sbjct: 377 LREIEKFYSIKINPMPA 393


>gi|301762406|ref|XP_002916625.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Ailuropoda melanoleuca]
          Length = 706

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 210/456 (46%), Gaps = 7/456 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 247 FQRYPE-VMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL+ 
Sbjct: 306 SQPVIRGQRNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCIYGGGDRNGQIQDLKK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 424

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++ + I   L   
Sbjct: 425 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEEEKCSHIQTFLESM 484

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A+    +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 485 SPKDKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ ++ +N  R A     
Sbjct: 545 DLASRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWRVAGELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +   A  S+  +     +       ++ +++ L     +         +  KH    +  
Sbjct: 605 ILERAQQSIPEDLVAMAKRYEANKLKKEMEEKLGKPQGKPQSLCEESQVAEKHCWVFMGR 664

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
            F  +H   L              RD         +
Sbjct: 665 AFAEVHVTSLELGSLALSSDSPGARDEIHLGGSEVR 700


>gi|290968690|ref|ZP_06560228.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781343|gb|EFD93933.1| DEAD/DEAH box helicase [Megasphaera genomosp. type_1 str. 28L]
          Length = 420

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 114/411 (27%), Positives = 208/411 (50%), Gaps = 13/411 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+ +    ++ E L ++G    T VQE  L    + +D+L  AQTG+GKT+AF L   
Sbjct: 3   TTFQTLGVSPILCELLKKQGIAVPTQVQEKALPALFQGRDILGQAQTGTGKTLAFLLPAL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  +         L +APTRELA Q+      L A   + +   IGG ++  + +
Sbjct: 63  QQIHPDQHQE------QVLILAPTRELAKQITAVATDLAAALHIDILNIIGGQTIENQLQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ    +++GTPGRL DH R   LN++ +  +++DEAD++L  GF +D++ +L  +PK+
Sbjct: 117 KLQRHPQMIIGTPGRLLDHCRRHSLNLTGVGRIIVDEADQLLQTGFLEDVDTLLGMTPKR 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNI 238
           R++L FSAT+   I +LAK +  +    ++   +      I+ R  ++    + + +  +
Sbjct: 177 RQLLFFSATVPDKIKSLAKKHMHNPFVFHVLEGSSIALETIEQRIYMIKEEQKFSFLCKL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       +++FC+T+   S     L    F V  L G+LSQ  R+  L+     + ++ 
Sbjct: 237 LHEMNPYLSVIFCNTKERTSILAGQLIRAGFAVSELHGDLSQGRRTQVLRDFSKAKTQLL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  +  V + ++  + +  +HR GRTGRAG +G++V +     +    R
Sbjct: 297 VATDIAARGLDIAGITHVFNYDVPHDIDYYIHRIGRTGRAGNEGLAVTLATAADEDWVRR 356

Query: 359 LFREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVD 405
           +      ++    A     +++       +RI +D L + + Q  ++K   
Sbjct: 357 IEHAIRATITKYTASGKIQVKQAPTAPKKKRIYKDKLPVATYQATKEKRHK 407


>gi|311747002|ref|ZP_07720787.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
 gi|126578701|gb|EAZ82865.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Algoriphagus sp.
           PR1]
          Length = 418

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 191/371 (51%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + E L   G+   T +QE  +   L  KD++  AQTG+GKT AF L + + +   
Sbjct: 7   NFETSLQEGLDAMGFEQPTPIQEKAIPVILDNKDLIACAQTGTGKTAAFILPVLNKI--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQ 122
               S +     L +APTRELA+Q+ ++++      G+          G+   ++++ L+
Sbjct: 64  --SKSGSDKLNTLVLAPTRELAIQIDQQIQGFSYFLGISSIPIYGGGDGIVWEQQKKALE 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA IVV TPGRL   + G  +++S L+ ++LDEAD M+D+GF DDI  I++  PK+R+ 
Sbjct: 122 TGAEIVVATPGRLIALLAGGKMDLSSLEHLILDEADRMMDMGFSDDILKIVNYLPKERQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+   I   +    K+   +   +  +  + +      V    +++ + NIL   
Sbjct: 182 ILFSATMPSKIRQFSMKILKNPQEI-SIAIGKTAAGVTQAMYSVYDGQKEDLVKNILSQK 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F ST+  V    K L +      A   +L Q ER   +   ++   ++ I TD
Sbjct: 241 AYEAVIIFASTKEKVKGLYKKLRKDFEV-EAFHSDLEQIEREKIMSGFKNKSIKILIGTD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + +RGID+  +ELVI+ +  S+PE+ +HR GRT RA ++G ++  +    Q +  R+ + 
Sbjct: 300 IISRGIDVVGIELVINFDTPSDPEDYVHRVGRTARADKEGEAITFVNPKDQYKFARIEKL 359

Query: 363 ANVSVVWEPAP 373
             + +   P P
Sbjct: 360 IGMEITQIPLP 370


>gi|260770664|ref|ZP_05879595.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|260614390|gb|EEX39578.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii CIP 102972]
 gi|315178384|gb|ADT85298.1| ATP-dependent RNA helicase RhlB [Vibrio furnissii NCTC 11218]
          Length = 435

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 194/389 (49%), Gaps = 6/389 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A    LL   
Sbjct: 16  LHPQVVEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFHHLLTTP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EIEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +    +    I       +   +   +  +L    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPTQKTGHRIKEELFYPSNEHKMALLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+    +    LA    +V  L+G++ Q++R   L+    G   V +ATDV
Sbjct: 256 PDRAIVFANTKHRCEQIWGHLAADGHRVGLLNGDVPQKKRERILEQFTKGELDVLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPGIEEYI 375

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQD 389
             A  +  ++P+  +  + +    R  Q 
Sbjct: 376 EHAIPTSEYDPSALLTDLPKALTMRSSQQ 404


>gi|167584411|ref|ZP_02376799.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia ubonensis
           Bu]
          Length = 481

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 187/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNVQDLDYQTPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          + +    GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIDYGKGLDLRLLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  +++ +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELDAVFAALPAQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +  V+++++  N     I    V V   ++ +  ++++  +  K+A+
Sbjct: 189 FSDDIRAMAAGILRGPVKISVSPPNATAGKIKQWVVPVDKRNKPDLFMHLVAENDWKHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+
Sbjct: 249 VFVKTRKGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVHMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DINGLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLP 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|15227951|ref|NP_181780.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861890|sp|Q84W89|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37
 gi|4559339|gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|330255039|gb|AEC10133.1| DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana]
          Length = 633

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 196/389 (50%), Gaps = 20/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPI 277

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337

Query: 175 SSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                 R +     FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 338 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSD 397

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 398 KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQER 457

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 458 EVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 517

Query: 344 SVFVIPQ---NMQRRAERLFREANVSVVW 369
           +         ++ R    L +EAN  V  
Sbjct: 518 ATAFFNDGNTSLARPLAELMQEANQEVPE 546


>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 497

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 202/390 (51%), Gaps = 7/390 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + N+P  +  A+S+  +   T +Q   +   L  KD++  AQTG+GKT AF L + 
Sbjct: 54  MRFHDFNLPDDVLHAISDLKFEYCTGIQAETIPAALAGKDIIGKAQTGTGKTAAFLLGII 113

Query: 60  STLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRE 117
           + L+       P    P AL +APTRELA+Q+  + + L   T   VV++  G     + 
Sbjct: 114 TDLIDYPLEEKPRLGEPRALVVAPTRELALQIAEDAKGLAKYTDLHVVSLVGGMDYEKQR 173

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++  +    I+V TPGRL D +  K +++ +++ +VLDEAD ML +GF  D+  I+ ++P
Sbjct: 174 QKLKKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRMLSMGFIPDVRTIVRNTP 233

Query: 178 KKRRMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           +K        +SAT +  I  LA+ +  DAV++ IA E +   ++     LV+  ++   
Sbjct: 234 RKGADRQTLLYSATFTDDILNLAEQWTLDAVKIEIAPEIKTTDNVTQTVYLVSGEEKYRL 293

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N +    A+  IVF + R    R    L +   +   +SGE+ QQ+R   L+  R G+
Sbjct: 294 LRNYMDKDHAEKVIVFGNRRDETRRLADRLCKDGIRAALMSGEIPQQKRVRTLEDFRSGK 353

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +V +ATDVA RGI +  +  V + +L  +P++ +HR GRTGRAG  G S+    ++   
Sbjct: 354 IQVLVATDVAGRGIHIDGVTHVFNYQLPEDPDDYVHRIGRTGRAGATGASICFACEDDSF 413

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQ 384
               +  E  V +     P  E + E  A+
Sbjct: 414 LIPEIEAETGVKLECV-HPEAELLLEPKAK 442


>gi|313231162|emb|CBY19160.1| unnamed protein product [Oikopleura dioica]
          Length = 427

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 173/371 (46%), Gaps = 9/371 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   + E+G+ + + +QEA +   L  +D+L  A+ G+GK+ A+ + L  
Sbjct: 40  SFEEFCLKRNVLMGIYEKGWESPSPIQEASIPVALSGRDILARAKNGTGKSGAYLIPLIE 99

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +D+        AL + PTRELA+Q  +    +    G+ V    GG  +  +   
Sbjct: 100 RVDPNSDKV------QALVLVPTRELALQTSQICIEMGKHCGIKVLATTGGTDLRDDILR 153

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H++V TPGR+ D I      +     +VLDEAD++L   F+  ++ I+   P  R
Sbjct: 154 LDKTVHVIVATPGRILDLITKDIAKVDSCNMLVLDEADKLLSDFFKRVVDSIVRKLPVSR 213

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++    K + K+   +N+  E             VA   + + +  +  
Sbjct: 214 QVLLYSATFPQSVMVFMKEHMKNPHEINLMEELTLKGV-TQYYAFVAEKQKVHCLNTLFS 272

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +   ++Q+ R+      R G  R  + 
Sbjct: 273 KLQINQSIIFCNSTQRVELLAKKITDLGYSCFYIHARMNQEHRNRVFHDFRKGLCRNLVC 332

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   +R+ 
Sbjct: 333 SDLFTRGIDIQAVNVVINFDFPRMAETYLHRIGRSGRYGHLGLAINLITYDDRYNLKRIE 392

Query: 361 REANVSVVWEP 371
            +    +   P
Sbjct: 393 EQLTTDIKPIP 403


>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 481

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 186/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L  +   
Sbjct: 10  DPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLGQQGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVSV+ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSVNPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAERQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  LA    +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FTDDIRALAAGILRGPVDISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAQNNWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G   + +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARMRALERFKTGEVNMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|66800707|ref|XP_629279.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
 gi|74896763|sp|Q54CE0|DDX17_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx17; AltName:
           Full=DEAD box protein 17
 gi|60462734|gb|EAL60936.1| hypothetical protein DDB_G0293168 [Dictyostelium discoideum AX4]
          Length = 785

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 180/369 (48%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+ N T +Q       L+ +D++  A+TGSGKT+AF L     + A+ 
Sbjct: 391 FPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQ- 449

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTRELA+Q+  E       + +      GG S H +   L+ G  
Sbjct: 450 PVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVE 509

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 510 IVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFS 569

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV--LVALSDRDNAIVNILRYHGA 244
           AT    +  LA ++  D ++V+I S     +    + V        ++  +  +      
Sbjct: 570 ATWPKEVQALAHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRD 629

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF  TR  V    +VL    F+ + + G  SQ ER   L   ++G   + IATDVA
Sbjct: 630 EKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVA 689

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--- 361
           +RG+D+ D++ V++ +  +  E  +HR GRT RAG  G+S  ++  +  R A  L +   
Sbjct: 690 SRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLT 749

Query: 362 EANVSVVWE 370
           EA   +  E
Sbjct: 750 EAKQKIPIE 758


>gi|293348206|ref|XP_001059856.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41-like [Rattus
           norvegicus]
          Length = 1348

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 192/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   +P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 227 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 286

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 287 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIG 346

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GVS+  +   +++G HI+V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 347 GVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 406

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 407 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 466

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 467 KMVYLLECLQKTPPP-VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 525

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 526 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 585

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 586 ACDESVLMDLKALLLEAKQKVPP 608


>gi|255642429|gb|ACU21478.1| unknown [Glycine max]
          Length = 413

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/366 (31%), Positives = 185/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 ----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 TVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +  +   V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  +  R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTADDSRMLSDIQKFYNV 400

Query: 366 SVVWEP 371
           +V   P
Sbjct: 401 TVEELP 406


>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
 gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
          Length = 649

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 169/381 (44%), Gaps = 18/381 (4%)

Query: 5   ENIPQVI------------GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P  I             E + + GYV  T +Q+  +      +D++  AQTGSGKT 
Sbjct: 228 ENVPPPIKSFDQARLRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTA 287

Query: 53  AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
           AF L + S +L E+        P A+ ++PTRELA+Q+  E       T + +++  GG 
Sbjct: 288 AFLLPILSNILDESHDLEIGK-PQAVIVSPTRELAIQIFNEARKFAYSTYLKISIVYGGT 346

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S   +   +  G H+++ TPGRL D +    +  +  + VVLDEAD MLD+GF D +  I
Sbjct: 347 SFKYQNECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSDSMRKI 406

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +     +        + +          +                     + +       
Sbjct: 407 MHHQTMRAEHQTLMFSATFPEEIQRMAGEFLRNYVFVTIGVVGGACSDVQQTIYEVNKFN 466

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             + +  +   GA   IVF  T+ +        +E  F   ++ G+  Q +R  AL+  +
Sbjct: 467 KRSKLMEILREGADGTIVFVETKRAADFLASFFSETEFPTTSIHGDRLQSQREQALRDFK 526

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V IAT VA+RG+D+ +++ VI+ ++ SN ++ +HR GRTGR G  G +      +
Sbjct: 527 NGTMKVLIATSVASRGLDIKNVKHVINYDMPSNIDDYVHRIGRTGRVGNSGRATSFFDPD 586

Query: 352 MQR----RAERLFREANVSVV 368
             R       ++   +   V 
Sbjct: 587 QDRAIAGDLIKILEGSGQEVP 607


>gi|118404788|ref|NP_001072584.1| probable ATP-dependent RNA helicase ddx6 [Xenopus (Silurana)
           tropicalis]
 gi|123905703|sp|Q0IHV9|DDX6_XENTR RecName: Full=Probable ATP-dependent RNA helicase ddx6; AltName:
           Full=DEAD box protein 6
 gi|114108232|gb|AAI22945.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
 gi|171847243|gb|AAI61499.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Xenopus (Silurana)
           tropicalis]
          Length = 481

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 181/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 97  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      GV V    GG ++  +   
Sbjct: 157 LDLKKDCI------QAMVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMR 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 211 LDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIIITLPKNR 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 271 QILLYSATFPLSVQKFMTSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 329

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 330 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 390 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 449

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 450 EQLGTEI--KPIPS 461


>gi|311030272|ref|ZP_07708362.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 510

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 122/419 (29%), Positives = 210/419 (50%), Gaps = 19/419 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  +L   G    T +QE  +   L   DV+  AQTG+GKT+AF L +   +   N    
Sbjct: 13  VNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPILEKVDVNNPE-- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVV 129
                 AL + PTRELA Q+ +E++ L      +  +   GG  V+ + + L+   H++V
Sbjct: 71  ----TQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQLKKLKGAQHVIV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL DH+R   +++S +  +V+DEAD+ML +GF  DI+ I       R+ ++FSATI
Sbjct: 127 ATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIFASRQTMLFSATI 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I  LAK Y K    + IA +    + I++ AV      ++  ++++++ H    AI+
Sbjct: 187 PNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLHLIKEHNPYLAII 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+A V + T+VL     +  AL G++ Q +R+ A++  R+ + +  +ATDVAARG+D
Sbjct: 247 FCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQYLVATDVAARGLD 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  V + ++  + E  +HR+GRTGRA   G +  +         + + +   + +  
Sbjct: 307 VEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQMIEKGIEMPLEK 366

Query: 370 -----EPAPSVEAIRERDAQRILQ-------DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   P  +   E     I +         +    I  D K++V + +  H+ EK+
Sbjct: 367 LVFKGISIPDRDDYEEERNVNIAKARREKARKKILPTKISRDRKEVVQMNIKGHEAEKL 425


>gi|256088559|ref|XP_002580398.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665968|emb|CAZ36637.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1476

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 5/369 (1%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            I   +   L    +   T +Q   L   +  +D++  A+TGSGKT+AF + L   L  + 
Sbjct: 789  ISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHLEHQA 848

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +P   P+AL +APTRELA+Q+ +E + L            GG  +  +  +L+ GA 
Sbjct: 849  P-LNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAELKRGAE 907

Query: 127  IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I+V TPGR+ D      G+  N+     VVLDEAD M DLGF   +  I+++    R+ L
Sbjct: 908  IIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTL 967

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
            MFSAT    +  LA+      + + I   +   SD++  A +++  ++   ++ +   Y 
Sbjct: 968  MFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQ 1027

Query: 243  GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               + +VF   + S     +VL ++ +  ++L G + Q +R + +   + G  R+ IAT 
Sbjct: 1028 EEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATS 1087

Query: 303  VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
            VAARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R 
Sbjct: 1088 VAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVRA 1147

Query: 363  ANVSVVWEP 371
               S    P
Sbjct: 1148 FKQSGQKPP 1156


>gi|256088557|ref|XP_002580397.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665967|emb|CAZ36636.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1500

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 5/369 (1%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            I   +   L    +   T +Q   L   +  +D++  A+TGSGKT+AF + L   L  + 
Sbjct: 813  ISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHLEHQA 872

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +P   P+AL +APTRELA+Q+ +E + L            GG  +  +  +L+ GA 
Sbjct: 873  P-LNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAELKRGAE 931

Query: 127  IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I+V TPGR+ D      G+  N+     VVLDEAD M DLGF   +  I+++    R+ L
Sbjct: 932  IIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTL 991

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
            MFSAT    +  LA+      + + I   +   SD++  A +++  ++   ++ +   Y 
Sbjct: 992  MFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQ 1051

Query: 243  GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               + +VF   + S     +VL ++ +  ++L G + Q +R + +   + G  R+ IAT 
Sbjct: 1052 EEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATS 1111

Query: 303  VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
            VAARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R 
Sbjct: 1112 VAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVRA 1171

Query: 363  ANVSVVWEP 371
               S    P
Sbjct: 1172 FKQSGQKPP 1180


>gi|256088555|ref|XP_002580396.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665966|emb|CAZ36635.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 1544

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 5/369 (1%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            I   +   L    +   T +Q   L   +  +D++  A+TGSGKT+AF + L   L  + 
Sbjct: 857  ISSRLLACLKRNNFDKPTPIQCQALPVIMSGRDMIGIAKTGSGKTLAFLVPLMRHLEHQA 916

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +P   P+AL +APTRELA+Q+ +E + L            GG  +  +  +L+ GA 
Sbjct: 917  P-LNPGDGPIALLLAPTRELALQIFKETKKLCQAADARAVCVYGGTGISEQIAELKRGAE 975

Query: 127  IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I+V TPGR+ D      G+  N+     VVLDEAD M DLGF   +  I+++    R+ L
Sbjct: 976  IIVCTPGRMIDMLAANGGRVTNLHRCSYVVLDEADRMFDLGFEPQVMRIIENCRPDRQTL 1035

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
            MFSAT    +  LA+      + + I   +   SD++  A +++  ++   ++ +   Y 
Sbjct: 1036 MFSATFPRQMEILARKVLTLPIEIQIGGRSVVCSDVEQHAFILSEEEKVYKVLELLGIYQ 1095

Query: 243  GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               + +VF   + S     +VL ++ +  ++L G + Q +R + +   + G  R+ IAT 
Sbjct: 1096 EEGSVLVFVEKQESADELMRVLLKYGYPCLSLHGGIDQYDRDSVIMDFKRGNIRLLIATS 1155

Query: 303  VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
            VAARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAGRKG +   +  + +R A  + R 
Sbjct: 1156 VAARGLDVTDLLLVINYDCPNHYEDYVHRCGRTGRAGRKGFAYTFLTPDQERSAGDVVRA 1215

Query: 363  ANVSVVWEP 371
               S    P
Sbjct: 1216 FKQSGQKPP 1224


>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 409

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 198/371 (53%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +
Sbjct: 7   SLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLID 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+         AL + PTRELAVQV +        T + V +  GGVS+  ++ + + G 
Sbjct: 67  NESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   LN+  L  +V DEAD MLD+GF D+I+ +L   P +R+ L+F
Sbjct: 127 DVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I   +KN  +D   + +A  N   + ++ R   +    +   + +++R    +
Sbjct: 187 SATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAA
Sbjct: 247 QVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    + 
Sbjct: 307 RGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEALLDK 366

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 367 RLPQQWYPGFE 377


>gi|198453003|ref|XP_002137583.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
 gi|198132172|gb|EDY68141.1| GA27302 [Drosophila pseudoobscura pseudoobscura]
          Length = 800

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   +S   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 290 ITTFDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPI 349

Query: 59  ASTLLAENDRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P +          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 350 LNQMYEHGMSAPPQNNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 409

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 410 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 469

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 470 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 529

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 530 VYEQDKRSYLLDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDR 589

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 590 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 649

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 650 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 682


>gi|110004511|emb|CAK98848.1| putative atp-dependent rna helicase protein [Spiroplasma citri]
          Length = 443

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 208/381 (54%), Gaps = 8/381 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +++ GY NLT +QE  +   L  +D++  + TG+GKTVAF + +   L   
Sbjct: 7   NLYPALQRMIAKMGYTNLTEIQEKAIPVALNSQDIIGKSHTGTGKTVAFIVPILQNLNTH 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P A+ + PT ELA Q+  ++         V A  I G S  + +      +
Sbjct: 67  ------LKQPQAIILCPTHELASQIIEQVRKFATYLEGVNATLICGGSHIQRQIYALRKS 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I+VGTPGR+ DHI  K L +  +K +VLDEADEML +GF+ D++ +  ++P K + L+F
Sbjct: 121 NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKTDLDKVFQNAPNKYQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  +A NYQ + V + +     + ++I    V      +++ ++ + ++   K
Sbjct: 181 SATMPKQVLEIANNYQTNPVEIVVTKNVIEQNNISQHYVNAISYHKEDVLIALYKHLQPK 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F +T+   ++  ++L  +      ++G+ S+ ER  A+++ RDG+ RV +ATDVAA
Sbjct: 241 RSIIFSNTKVFTNKIAEMLTNNGIPCCIINGDKSRYERGQAMRLFRDGKVRVMVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERLFREAN 364
           RGID+ +++ VI+ ++ +  E+ +HR GRT RAG  G+++ ++  +N  R  + L     
Sbjct: 301 RGIDIDNIDYVINYDIPTERESYIHRIGRTARAGATGVAISIVSNRNDLREIQHLGAYQK 360

Query: 365 VSVVWEPAPSVEAIRERDAQR 385
             +      +   ++++  +R
Sbjct: 361 KKIELLDI-TTYDLKQKPQER 380


>gi|51712358|ref|XP_485792.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
 gi|82902181|ref|XP_918907.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Mus musculus]
          Length = 411

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLTLGDYMNVQCHACIGGTNVDEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D + + +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPICILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G + Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGNMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TD+ ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDIWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
 gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
          Length = 398

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 170/365 (46%), Gaps = 3/365 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L     L  +
Sbjct: 9   ELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYL-QD 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A   L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 68  FPRRKPGPA-RVLILTPTRELAMQVAEQARALAKHTKLNIFTITGGVQYQEHADILGKTQ 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++  ++
Sbjct: 127 DVVVATPGRLMEYINAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSSECRWRKQTHLY 186

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT     +     +  KD   ++     R+   I               ++  +    A
Sbjct: 187 SATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMQHKFELLKHIITEQA 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  TR  +      L         + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 247 DRTIVFLKTRERLGELRAQLEAAQVPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++  + Q   +R+ R   
Sbjct: 307 ARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMMDRVARYVK 366

Query: 365 VSVVW 369
             +  
Sbjct: 367 EDIKE 371


>gi|321455095|gb|EFX66239.1| hypothetical protein DAPPUDRAFT_219114 [Daphnia pulex]
          Length = 599

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 120/490 (24%), Positives = 223/490 (45%), Gaps = 19/490 (3%)

Query: 2   KIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           + F ++      +  +A+ E G+  +T +Q   +   L  +D+L  A+TGSGKT+AF + 
Sbjct: 105 QTFASLEGSVSDLTLKAVEEMGFKKMTEIQAKSIPHLLEGRDLLGQAKTGSGKTLAFLIP 164

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               +     +F P +    + I+PTREL++Q    L  L         + +GG +   E
Sbjct: 165 AIELIY--KLKFMPRNGTGVIIISPTRELSMQTFGVLRELLRHHSHTYGLVMGGANRQAE 222

Query: 118 RRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L  G +I+V TPGRL DH          +L+ +++DEAD +LD+GF ++++ ++   
Sbjct: 223 AAKLVKGVNILVATPGRLLDHLNSTTDFLFKNLQCLIIDEADRVLDIGFEEELKQLIRIL 282

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDN 233
           PKKR+ ++FSAT +  I  LA+   K    +    +  + + +   +   V+     R  
Sbjct: 283 PKKRQTMLFSATSTQKIEDLARLALKKEPIIVGVEDVVEKATVEGLEQGYVVCPAEKRFL 342

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + + L+ +  K  +VF S+  SV    ++L      V+ + G+  Q +R+       + 
Sbjct: 343 MLFSFLKRNRKKKIMVFFSSCLSVKFHHELLNYIDMPVMCIHGKQKQTKRTTTFFQFCNA 402

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNM 352
            + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R  G KG ++ ++    
Sbjct: 403 DSGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGQGGKGHALLLLRPEE 462

Query: 353 QRRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  ++A V +  +E + S  A  +   ++++    FL     +  K        H
Sbjct: 463 LGFL-RYLKQAKVPLNEFEFSWSKIADIQPQLEKLVSKNYFLHMSAKEAYKAYIRAYDSH 521

Query: 412 DPEKI----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
             + I         R+ ++ G   P  +      +  DR R     F    G   +   +
Sbjct: 522 HLKTIFDVHTLDLARVAQSFGFKVPPTVDLNMRSTKADRPRKRQGNFGETHGGTKHRTKA 581

Query: 467 SWFSLSVGSK 476
           S +   VG K
Sbjct: 582 SIYR-QVGQK 590


>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
 gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
 gi|296485512|gb|DAA27627.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|5410326|gb|AAD43033.1| RNA helicase [Homo sapiens]
          Length = 1031

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 128/560 (22%), Positives = 251/560 (44%), Gaps = 28/560 (5%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PLA+ + PTRELA+Q+ + +   +   G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPLAVIMTPTRELALQIPKGVRS-FKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 500

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 501 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 560

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 561 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 620

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 621 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 680

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 681 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 740

Query: 367 VVWEPAPSVEAIRE--RDAQR-----ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
               P P +E +    +D Q+     I +   F       ++    +   +   +K A G
Sbjct: 741 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 799

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-------FSLS 472
                        +    S+ + + R +D +        +                  ++
Sbjct: 800 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRIN 859

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDK 529
                  E++  +     ++ +   +I    + P ++   ++    + +   +    L+K
Sbjct: 860 AQKNLGIESQVDVMQQATNAILRGGTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEK 915

Query: 530 GIQLKYLGGEKPDFRGYKSS 549
             + +  GG+   F+ Y+  
Sbjct: 916 QEEERQDGGQNESFKRYEEE 935


>gi|186473980|ref|YP_001861322.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184196312|gb|ACC74276.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 481

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DRLLRNVQDLHYQTPTPVQVKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S ++    L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VS-SNRVRVLVLVPTRELAEQVLQSFVVYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A N+ +  V ++++  N   S I    V V   ++ +  ++++  +   +A+
Sbjct: 189 FSDDIRAMAANFLRGPVHISVSPPNATASKIRQWVVPVDKRNKPDLFMHLVAENNWDHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G+  + +ATDVAARG+
Sbjct: 249 VFVKTRTGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGQVHMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDHLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLP 368

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 369 REEEPGFEA 377


>gi|109071704|ref|XP_001112413.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Macaca
           mulatta]
          Length = 648

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/396 (27%), Positives = 187/396 (47%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L 
Sbjct: 247 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 305

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 306 LQPTLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRK 364

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 365 GVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 424

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRY 241
           M SAT             ++  +      +    S +    ++    ++  +    +   
Sbjct: 425 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNM 484

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 485 SSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIAT 544

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 545 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 604

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +R+ +R ++ P
Sbjct: 605 ILERANQSIPEELVSMAERFKAHQQKREMERKMERP 640


>gi|145256950|ref|XP_001401571.1| ATP-dependent RNA helicase ded1 [Aspergillus niger CBS 513.88]
 gi|134034089|sp|A2QI25|DED1_ASPNC RecName: Full=ATP-dependent RNA helicase ded1
 gi|134058481|emb|CAL00690.1| unnamed protein product [Aspergillus niger]
          Length = 678

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   + E +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 189 FTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                   +PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 249 AYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 308

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 368

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 369 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 428

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 429 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRER 488

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 489 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 548

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 549 ATAFFNRGNRGVVRDLIDLLKEAHQEVP 576


>gi|169851879|ref|XP_001832628.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
 gi|116506276|gb|EAU89171.1| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]
          Length = 509

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L ++D+L  A+ G+GKT AF +     
Sbjct: 44  FEDMRLGRELLMGIFEAGFEKPSPIQEEAIPVALTKQDILARAKNGTGKTAAFVIPSLQQ 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +     +        AL + PTRELA+Q  +  + L    GV V V  GG ++  +   L
Sbjct: 104 IDVAKPKI------QALLLVPTRELALQTAQVCKILGKHMGVQVMVTTGGTTLKDDIIRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  H++VGTPGR+ D       ++S     V+DEAD++L   F   +E +L   P +R+
Sbjct: 158 SDTVHVLVGTPGRILDLAGKNVADLSECPVFVMDEADKLLSPEFAPVMEQLLSFLPSERQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    +      + +    +N+  E             V    + + +  +   
Sbjct: 218 VMLFSATFPMIVKDFKDKHMRSPYEINLMEELTLRGV-TQYYAYVEERQKVHCLNTLFSK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + +
Sbjct: 277 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ ++    +    ++ +
Sbjct: 337 DLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQ 396

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 397 ELGTEIQPIP 406


>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
          Length = 496

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 54  IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 114 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 173

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 174 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 233

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 234 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 293

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 294 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 352

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 353 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 412

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 413 ACDESVLMDLKALLLEAKQKVPP 435


>gi|223995669|ref|XP_002287508.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
 gi|220976624|gb|EED94951.1| atp-dependent RNA DEAD/DEAH box helicase [Thalassiosira pseudonana
           CCMP1335]
          Length = 416

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L+ ++VL  A+ G+GKT A+ +     
Sbjct: 44  FEDFFLKRELLMGIFEKGFEKPSPIQEEAIPIILQNRNVLARAKNGTGKTAAYIIPCLEK 103

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   +  +    L + PTRELA+Q    ++ +    G+   V  GG S+  +   L
Sbjct: 104 ------TDTTQTYVQVLILIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRL 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+V TPGR+ D    K  ++S  + +++DEAD++L   F+  +E I+D   KK +
Sbjct: 158 YNSVHIIVATPGRILDLASKKVADLSKCRTIIMDEADKLLSTEFQPVLEKIIDLCDKKHQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    +    + +  +   +N+  E             V    + + +  +   
Sbjct: 218 ICLFSATFPVTVKEFCQKFVPNPYSINLMDELTLRGI-TQFYAYVEERQKVHCLNTLFSK 276

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + +
Sbjct: 277 LEINQSIIFCNSVNRVELLAKKVTELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTS 336

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I  + +    R+ +
Sbjct: 337 DLFTRGIDIQSVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAVNLITYDDRHALRRVEQ 396

Query: 362 EANVSVVWEPAPSV 375
           +    +   P P+V
Sbjct: 397 DLGTEI--RPIPAV 408


>gi|73953218|ref|XP_536417.2| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 1 [Canis familiaris]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|47221754|emb|CAG08808.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1046

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 213/449 (47%), Gaps = 9/449 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  AL +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 354 ILSALKKHTYEKPTPIQAQAIPAVMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRP-LE 412

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            +  P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 413 ESEGPIAVIMTPTRELALQITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVC 472

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+DS    R+ +MFSA
Sbjct: 473 TPGRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDSVRPDRQTVMFSA 532

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T   A+  LA+      + V +   +   SD++   +++   ++   ++ +   Y    +
Sbjct: 533 TFPRAMEALARRILNKPIEVQVGGRSVVCSDVEQHVLVIEEDNKFLKLLELLGHYQERGS 592

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L +  +  ++L G + Q +R + +   + G  R+ +AT VAAR
Sbjct: 593 VIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKSGACRLMVATSVAAR 652

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 653 GLDVKQLILVVNYNCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELS 712

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
               P P +E +      +   +   + S  G   K       +H    +A    ++ +A
Sbjct: 713 GSSVP-PELEQLWVSFKDQQKAEGKIIKSSSGFSGKGFKFDETEH---ALANERKKLQKA 768

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            L   +       +   ++      + K 
Sbjct: 769 ALGLQDSDDEDGALDIEEQIESMFNSKKR 797


>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H88]
          Length = 1199

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 195/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 576 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 634

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 635 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 694

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 695 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 754

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +  ++    +I     +     +          +     +
Sbjct: 755 FPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKN 814

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 815 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 874

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 875 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 934

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S    P P  + +             F++ ++  ++K          L + D E+ A
Sbjct: 935 LKQSGQPVPEPVQKLVNS-----------FMEKVKAGKEKASGSGFGGKGLERLDQERDA 983

Query: 418 A 418
           A
Sbjct: 984 A 984


>gi|269961058|ref|ZP_06175427.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
 gi|269834277|gb|EEZ88367.1| ATP-dependent RNA helicase RhlE [Vibrio harveyi 1DA3]
          Length = 411

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSAPITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIVDCMPEDIQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   ++IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEISIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLVFIETKHGAAKLVTQLEKRGIVAEAFHSGRNQRVRQELIEQFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-------QRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++        + R   L
Sbjct: 306 GIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +      +P P
Sbjct: 366 LERVEIEGFAPRKPVP 381


>gi|296807019|ref|XP_002844169.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
 gi|238843652|gb|EEQ33314.1| ATP-dependent RNA helicase DED1 [Arthroderma otae CBS 113480]
          Length = 680

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 196 VSTFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 255

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S         +P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 256 LSQAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 315

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 316 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 375

Query: 166 RDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++          + LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 376 EPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 435

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HGA   ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 436 KVEYVEDADKRSVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 495

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 496 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 555

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 556 GISTAFFNRGNRGVVRDLIELLKEAHQEVP 585


>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           capsulatus G186AR]
          Length = 1201

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 195/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 578 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 636

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 637 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 696

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 697 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 756

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +  ++    +I     +     +          +     +
Sbjct: 757 FPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKN 816

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 817 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 876

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 877 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 936

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S    P P  + +             F++ ++  ++K          L + D E+ A
Sbjct: 937 LKQSGQPVPEPVQKLVNS-----------FMEKVKAGKEKASGSGFGGKGLERLDQERDA 985

Query: 418 A 418
           A
Sbjct: 986 A 986


>gi|198435916|ref|XP_002130991.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Ciona intestinalis]
          Length = 1150

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 188/370 (50%), Gaps = 6/370 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL +  Y   T +Q   +   +   D++  A+TGSGKTVAF L +   ++ +     
Sbjct: 501 MLNALKKANYEKPTVIQAQAIPAIMSGHDLIGIAKTGSGKTVAFLLPMLRQIMDQRP-LE 559

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +       + V    GG  +  +  +L+ GA I+V 
Sbjct: 560 DTEGPIAVIMTPTRELALQITKECKKFTKSLKLHVVCVYGGTGISEQIAELKRGAEIIVC 619

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+     +VLDEAD M D+GF   +  +++S    R+ ++FSA
Sbjct: 620 TPGRMIDMLTVNNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMHVINSCRPDRQTVLFSA 679

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  LA+      V V +   +   SD+  + +++    +   ++ +L  +  K A
Sbjct: 680 TFPRQMEALARRILNKPVEVQVGGRSVVCSDVKQQVLILTEEQKFLKLLELLGQYQEKGA 739

Query: 248 -IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +       K L +  +  +AL G + Q +R + +   + G  ++ IAT VAAR
Sbjct: 740 VLVFVDKQERADYLLKELMDKSYSCMALHGGIDQYDRDSIISDFKRGVNQLLIATSVAAR 799

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L LV++    ++ E+ +HR GRTGRAG KG +   I Q+  R A  + +   +S
Sbjct: 800 GLDVKNLILVVNFNCPNHYEDYVHRCGRTGRAGNKGFAYTFITQDQARYAGEIIKALELS 859

Query: 367 VVWEPAPSVE 376
           +   P P +E
Sbjct: 860 LTKVP-PDLE 868


>gi|192359487|ref|YP_001981876.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
 gi|190685652|gb|ACE83330.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
           Ueda107]
          Length = 493

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 136/460 (29%), Positives = 218/460 (47%), Gaps = 21/460 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     + +A++E+GY   T VQ+A +   L  K++LVS++TGSGKT AF L  
Sbjct: 27  MSAFDDLIADTQLRKAIAEQGYEQPTEVQQAAIPRALEGKNLLVSSKTGSGKTAAFLLPC 86

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +LA++     ++  L L   PTRELA Q+ +  + L   T + V    GG  +  ++
Sbjct: 87  LQQILAQSAVNPRSTRLLIL--TPTRELARQIVKNAQSLLRFTSIKVGSICGGEELRYQK 144

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    IVV TPGRL +H+  K  + S L+ +VLDEAD MLD+G  +D+  I++S   
Sbjct: 145 ALLRKNPEIVVATPGRLAEHVAHKSTDFSGLEFLVLDEADRMLDMGLSEDVLKIVESCDA 204

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+                   I  E+  +       +      ++   V +
Sbjct: 205 ARQTLLFSATLEQKGLRHLIKQVITGEAEEIYIEDSSNQIEQQMVLADDDKHKERLAVAL 264

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF +T+   S+   +L  +  +  AL G+++Q +R   L+  R G+ RV 
Sbjct: 265 LNRAEYQKAIVFVNTKVRASQLDNILRYNQLRSTALHGDITQDDRKRVLEAFRQGKTRVL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++LVI+ E++ + +  LHR GRTGRA + G +V  +  +     + 
Sbjct: 325 VATDVAARGLDIDGVDLVINLEMAHSGDEYLHRVGRTGRADQPGRAVSFVSASEWNLTKS 384

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R   VS+     P +EA          + P  L                K D +K   
Sbjct: 385 IERYLKVSLQTIQIPGLEA--------SYKGPDKLKKSGKAYGAKKKAADGKQDKKKGTT 436

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                        ++IT    V  R+R     R    G G
Sbjct: 437 A---------GGAKKITEKVKVRERERKNIGKRRKPSGIG 467


>gi|301169611|emb|CBW29212.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
          Length = 415

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/393 (29%), Positives = 199/393 (50%), Gaps = 13/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   KRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYRHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   +G   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTNGYLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +       
Sbjct: 309 LVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP 368

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            +      S+          + + + + +L+ P
Sbjct: 369 AIEEYIGHSIP---------VSQYETEALLELP 392


>gi|302789710|ref|XP_002976623.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
 gi|300155661|gb|EFJ22292.1| hypothetical protein SELMODRAFT_151274 [Selaginella moellendorffii]
          Length = 595

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 188/375 (50%), Gaps = 17/375 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E +    +V  T VQ   +   L  +D++  AQTGSGKT+AF   + + +L +  R  
Sbjct: 159 LDENIKRCKFVKPTPVQRHAIPIALAGRDLMACAQTGSGKTLAFCFPIIAGILRDPPRQR 218

Query: 71  PAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           P      PLAL ++PTREL+ Q+  E +    +TG+ V V  GG  +  + R+L+ G  I
Sbjct: 219 PRGRWACPLALILSPTRELSAQIHDEAKKFAYRTGLKVVVAYGGAQISLQMRELERGVDI 278

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----LDSSPKKRRML 183
           +V TPGRL D +    + +S +K + LDEAD MLD+GF   I  I        P +R+ +
Sbjct: 279 LVATPGRLHDLMERGRVALSMIKYLALDEADRMLDMGFEPQIRKIVETSDMPPPGQRQTM 338

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--- 240
           +FSAT    I +LA ++  + + + +         I  R   V  +++ + +++I+    
Sbjct: 339 LFSATFPRTIQSLAADFLHNYIFLAVGRVGSSTDLIVQRVERVQEAEKRSLLMDIIHGQK 398

Query: 241 ----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      +VF  T+         L    F    + G+ +Q ER  AL+  R G   
Sbjct: 399 AIGANGQPPLMLVFVETKRGADALEDWLIRSGFPATTIHGDRTQPEREQALRCFRTGMTP 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P +  VI+ +L S+ ++ +HR GRTGRAG  G++           A
Sbjct: 459 ILVATDVAARGLDIPHVAHVINYDLPSDIDDYVHRIGRTGRAGNSGLATAFFTDKDSGLA 518

Query: 357 E---RLFREANVSVV 368
           +    L +E++  V 
Sbjct: 519 KPLAELMQESSQEVP 533


>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
 gi|74662479|sp|Q7RY59|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
 gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
          Length = 515

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 124/392 (31%), Positives = 202/392 (51%), Gaps = 14/392 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY N T +QE  +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 90  KTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPIL 149

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+ +P     AL +APTRELA Q+ +  E L +   +  A+ +GG+ +  +  
Sbjct: 150 QALL---DKPAP---LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAI 203

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH  + KG ++  ++ +V+DEAD +LD+ F   +E IL   P+
Sbjct: 204 ALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPR 263

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++V+++S             V +    +D  +V 
Sbjct: 264 ERRTFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHKDTYLVY 323

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  I+F  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 324 LCNEFAGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSREI 383

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q       
Sbjct: 384 LVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWL 443

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQR 385
           R+       +   P    E +    R  +AQR
Sbjct: 444 RIEAALGHKLDEYPLEKDEVMVFKPRVEEAQR 475


>gi|315178988|gb|ADT85902.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii NCTC 11218]
          Length = 460

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 7/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL +   L  +
Sbjct: 10  NLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ ++ I+  +PK+R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  +A++  +DA+ + +AS +   S       +     RD A+  +L  H  
Sbjct: 184 FSATYPEAIQEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+  V      L    F V+ L G++ Q+ER  AL    +    V +ATDVA
Sbjct: 244 ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG +G+++         R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIEEYMD 363

Query: 365 VSVVWEPAPS 374
           + +     P 
Sbjct: 364 IVISPAELPE 373



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 21/77 (27%)

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            +   G            +  G KQK     ++  L     +    IG I +     +V 
Sbjct: 372 PEPVKGVAPYRSNMVTIQIDGGKKQKVRPGDILGALTSDGSLTGDQIGKINLFQMRAYVA 431

Query: 513 VSADGVDLLRRTVKLDK 529
           V      +    +   K
Sbjct: 432 VQKSVAKVALDKLSNGK 448


>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
 gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
 gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
          Length = 623

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|127511273|ref|YP_001092470.1| ATP-dependent RNA helicase RhlB [Shewanella loihica PV-4]
 gi|189040043|sp|A3Q9R3|RHLB_SHELP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|126636568|gb|ABO22211.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 435

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 202/387 (52%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +AL E G+   T +Q   L   L  KD+   AQTG+GKT+AF +A  + LL  
Sbjct: 15  SLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLTT 74

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   + P A+ +APTRELA+Q+ ++ E L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PIPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGGESYEVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--M 182
             I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P       
Sbjct: 135 VDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDANERLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  D  +V IA   +   +I       ++ D+   ++ ++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDKMRLLLTLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILEQFTKGELDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        +   
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPAIEHY 374

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD 389
              S+          +   D++ +L D
Sbjct: 375 IQHSIP---------VTNYDSEALLDD 392


>gi|325123630|gb|ADY83153.1| ATP-dependent RNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 620

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 161/611 (26%), Positives = 245/611 (40%), Gaps = 47/611 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTTPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQETFVPFKERMKAVTQPNILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA ++V TPGRL D +  + L +  ++A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVIVATPGRLLDLVNRRQLKLDKVEALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  +R+ LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAGNRRQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFREAN----VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           + +   L    +    VS +    PS    R                             
Sbjct: 363 RGKIRALEDYLDARLSVSEIEGLEPSPPPARSGRDGGGRGRGGNGGRDGRRGGGFGGGRR 422

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD---SRAFKVGGGSRDNFK- 464
            + +         R  R      ++        G DR R +    R  + GG      + 
Sbjct: 423 FEGESNFKRREGGRDDRPRRSFDDKPRGERPFGGEDRPRREFNSDRPRREGGFEDRPRRE 482

Query: 465 -GSSWFSLSVGSKQK---------------AEARWLMPMLCRSSGINRQSIGAIRVQPDL 508
             S       G   K                + R             ++S G    +P  
Sbjct: 483 FNSDRPRREGGFNDKPRFDSNDDNRGNRVDYKPRRENGF----GDRPKRSFGG-EDRPRR 537

Query: 509 TFVEVSA------DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATK 562
           +F +          G D  RR    D+    +  GG     R       + +    G   
Sbjct: 538 SFDDKPRGERPSFGGEDRPRREFSSDRP---RREGGFNDKPRRSFDDKPRGERPAFGGED 594

Query: 563 RFKRFKGASKN 573
           R KR  G    
Sbjct: 595 RPKRSFGGEDR 605


>gi|225444867|ref|XP_002281219.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738640|emb|CBI27885.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 105 ----GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNV 400

Query: 366 SVVWEP 371
            +   P
Sbjct: 401 VIEELP 406


>gi|327262701|ref|XP_003216162.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Anolis
           carolinensis]
          Length = 420

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 197/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 98  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 152 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 212 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 272 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 392 EQYYSTQIDEMPM 404


>gi|154299943|ref|XP_001550389.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
 gi|160380638|sp|A6SEH9|DED1_BOTFB RecName: Full=ATP-dependent RNA helicase ded1
 gi|150857142|gb|EDN32334.1| hypothetical protein BC1G_10862 [Botryotinia fuckeliana B05.10]
          Length = 683

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 196/385 (50%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   + + +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 188 FTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    PA+A           P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 248 AFQTGPSPVPANAAGSFGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYG 307

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I 
Sbjct: 308 GADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIR 367

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I         + R+ LMFSAT    I  LA+++ KD V +++        +I  +   V
Sbjct: 368 RIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYV 427

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 428 EDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERA 487

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R+GR  + +AT VAARG+D+P+++ V++ +L ++ ++ +HR GRTGRAG  G+S  
Sbjct: 488 LEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTA 547

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  + 
Sbjct: 548 FFNRGNRGVCRDLIELLKEANQEIP 572


>gi|116668332|pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 2   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQV + L  L     V    CIGG +V  + R 
Sbjct: 62  CLDIQ------VRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRK 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 116 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 176 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 236 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG++V  +  +  R    +
Sbjct: 296 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDI 355

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 356 EQYYSTQIDEMPMNVADLI 374


>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 439

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL E GY   T +Q+  +   L+ K++L +AQTG+GKT +F L +   L   +
Sbjct: 8   LRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPILERL--AD 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A    AL + PTRELAVQV   +        +      GGV    +++ L +G  
Sbjct: 66  TEIQRAKRIRALILTPTRELAVQVHANVVQYAKHLPLTSIAIYGGVDEKPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+D  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIDKLPSERQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   K  V +++ ++      I+     V    +   + ++++      
Sbjct: 186 ATLSNQVRALAKTAIKRPVEISVIADRDSAPKIEQWLTTVDKDKKSALLSHLIKTEEWNQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +       +    SQ  R   L   + G  +  +AT +AAR
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRDIAAECIHSGRSQPVREQILADFKSGNIKYLVATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL  V++ +L    ++ +HR GRTGRAG  G+++  +  +  +    +       
Sbjct: 306 GIDIDDLSRVVNYDLPYPADDYIHRIGRTGRAGAAGVAISFVSNDDFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +  +     E
Sbjct: 366 IERKEIAGFE 375


>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
           posadasii str. Silveira]
          Length = 853

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 227 LDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 285

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 286 MEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 345

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 346 PGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSAT 405

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +   + +          +     +
Sbjct: 406 FPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNLYSDDNN 465

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   V IAT 
Sbjct: 466 EDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGIFPVLIATS 525

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 526 VAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 585

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P    EA+++           FL+ ++  ++K          L + D E+ A
Sbjct: 586 LKQSGQSVP----EAVQKMVDS-------FLEKVKSGKEKASASGFGGKGLERLDQERDA 634

Query: 418 A 418
           A
Sbjct: 635 A 635


>gi|307545623|ref|YP_003898102.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
 gi|307217647|emb|CBV42917.1| ATP-dependent RNA helicase RhlB [Halomonas elongata DSM 2581]
          Length = 474

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 200/372 (53%), Gaps = 3/372 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLA 64
           ++P  +  A+  +G+   T +Q   L   L   DV+  AQTG+GKT AF +++ +  L  
Sbjct: 100 DLPLPLMRAIHAQGFEYCTPIQAEALTHTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 159

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E        AP AL +APTRELA+Q+ ++ + L   T + VA  +GG+   ++R  L   
Sbjct: 160 EAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTNLNVASVVGGMDYQKQRDGLGKK 219

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D  + + ++++ ++ +VLDEAD ML +GF  D++ I+  +PKK     
Sbjct: 220 LDLLVATPGRLLDFHQKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKEERQT 279

Query: 185 F--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           F  SAT +  I  LA  +  +   V+I       +DID R  LV+  D++  +V +L+  
Sbjct: 280 FLFSATFTDDILNLAGQWTHEPAHVDIEVTVDNAADIDQRVYLVSDDDKERLLVKLLQQE 339

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + R  V +   +L +    V  LSG++ Q +R   L+  R+G  +V +ATD
Sbjct: 340 SFDRVMVFGNRRDLVRKLDGLLRKADINVAMLSGDVPQNQRIRTLEQFREGEIQVLVATD 399

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI + D+  VI+  L  +PE+ +HR GRTGRAG KG+S+  + +        + R 
Sbjct: 400 VAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIERF 459

Query: 363 ANVSVVWEPAPS 374
            N  +  E  P 
Sbjct: 460 INDKLPCEHPPE 471


>gi|302839493|ref|XP_002951303.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
 gi|300263278|gb|EFJ47479.1| hypothetical protein VOLCADRAFT_120953 [Volvox carteri f.
           nagariensis]
          Length = 414

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 192/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F+  N+ + +   +   G+   +++Q   + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDQMNLHENLLRGIYAYGFEKPSAIQAKGIVPFTKGLDVIQQAQSGTGKTATFCAGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L          +   AL +APTRELA Q+ + +  L     V    C+GG SV  + 
Sbjct: 100 LNNLDYN------LNECQALVLAPTRELAQQIEKVMRALGDFLQVKCHACVGGTSVREDA 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILGAGVQVVVGTPGRVFDMLRRRYLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KLQVGVFSATLPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVDVDKEEWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T+ + E    V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFANTRRKVDWLTEKMRERDHTVSATHGDMEQNARDVIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  I +  +R  +
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFIVKEDERMLQ 393

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + R  N  V   P+   + I
Sbjct: 394 DIQRFYNTVVEELPSNVADLI 414


>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 1197

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 571 LDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 629

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 630 MEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 689

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 690 PGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSAT 749

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +   + +          +     +
Sbjct: 750 FPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNLYSDDNN 809

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   V IAT 
Sbjct: 810 EDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGIFPVLIATS 869

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 870 VAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 929

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P    EA+++           FL+ ++  ++K          L + D E+ A
Sbjct: 930 LKQSGQSVP----EAVQKMVDS-------FLEKVKSGKEKASASGFGGKGLERLDQERDA 978

Query: 418 A 418
           A
Sbjct: 979 A 979


>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
 gi|118597491|sp|Q1DHB2|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1197

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 571 LDVIRKLGYEQPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 629

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 630 MEGPVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 689

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 690 PGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPSRQTVLFSAT 749

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +   + +          +     +
Sbjct: 750 FPRNMEALARKTLTKPVEIIVGGRSVVAQEITQIVEVRPENTKFVRLLELLGNLYSDDNN 809

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   V IAT 
Sbjct: 810 EDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGIFPVLIATS 869

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 870 VAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 929

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P    EA+++           FL+ ++  ++K          L + D E+ A
Sbjct: 930 LKQSGQSVP----EAVQKMVDS-------FLEKVKSGKEKASASGFGGKGLERLDQERDA 978

Query: 418 A 418
           A
Sbjct: 979 A 979


>gi|66819701|ref|XP_643509.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
 gi|74897315|sp|Q553B1|DDX46_DICDI RecName: Full=ATP-dependent RNA helicase ddx46; AltName:
           Full=ATP-dependent RNA helicase helB1; AltName:
           Full=DEAD box protein 46
 gi|60471516|gb|EAL69472.1| hypothetical protein DDB_G0275443 [Dictyostelium discoideum AX4]
          Length = 1151

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 113/414 (27%), Positives = 203/414 (49%), Gaps = 6/414 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   L +  Y   TS+Q   +   +  +D++  A+TGSGKT+AF L +   +LA+ 
Sbjct: 516 LTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQ- 574

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P    +AL ++PTRELA+Q+  E +      G+  A   GG S+  +  +L+ GA 
Sbjct: 575 PKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGAD 634

Query: 127 IVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +     +  N+  +  +VLDEAD M D+GF   I  I+DS    R+ +
Sbjct: 635 IVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTI 694

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT  P +  +AK      + +     +   SDI+    +     R   ++ +L    
Sbjct: 695 MFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWY 754

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K   ++F + + +     + L+   +Q ++L G   Q +R   +   ++    + IAT 
Sbjct: 755 HKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATP 814

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+ DL LV++ +   + E+ +HR GRTGRAG +G +   I  + +R +  + + 
Sbjct: 815 LASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKA 874

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              S    P   +  + +   ++  +    L +  G   +      A+ D + I
Sbjct: 875 LEQSGSKVPD-ELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFDAAEEDKKNI 927


>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
           jacchus]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|149726038|ref|XP_001502240.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           (DEAD box protein 41) (DEAD box protein abstrakt
           homolog) [Equus caballus]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|321252954|ref|XP_003192576.1| RNA helicase [Cryptococcus gattii WM276]
 gi|317459045|gb|ADV20789.1| RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 615

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   +   G+   + +QE  +   L  +D+L  A+ G+GKT +F +   + 
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L A    +  +   G +    +   
Sbjct: 98  IN------TSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILR 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ   HI+VGTPGR+ D        ++     V+DEAD++L   F   IE  L   P++R
Sbjct: 152 LQQPVHILVGTPGRILDLGSKGIAGLNKCSIFVMDEADKLLSEDFMPVIEQTLALCPQER 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSAT    +      +      +N+  E             V  S + + +  +  
Sbjct: 212 QVMLFSATFPWTVKEFKDQHMVQPYEINLMDELTLKGV-TQYYAYVEESQKVHCLNTLFS 270

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G+++ ++    +    R+ 
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 361 REANVSVVWEPA 372
            E    +   PA
Sbjct: 391 SELGTEIAPIPA 402


>gi|302416461|ref|XP_003006062.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
 gi|261355478|gb|EEY17906.1| ATP-dependent RNA helicase HAS1 [Verticillium albo-atrum VaMs.102]
          Length = 587

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 208/469 (44%), Gaps = 13/469 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+   G+  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 116 NLSEKTMKAIEGMGFTKMTEIQRRGIPPLLTGRDVLGAAKTGSGKTLAFLIPAIEML--S 173

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +    + ++PTRELA+Q+      L         + IGG +   E   L  G 
Sbjct: 174 SLRFKPRNGTGVIVVSPTRELALQIFGVARELMEHHSQTYGIVIGGANRRAEAEKLAKGV 233

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +LK +++DEAD +L++GF D++  I+   P   R    
Sbjct: 234 NLIIATPGRLLDHLQNTPFVFKNLKTLIIDEADRILEIGFEDEMRQIVKILPSADRQTSL 293

Query: 186 SATISPAITTLAKNYQ----KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +                     + V+   E+     ++   V+     R   + + L+ 
Sbjct: 294 FSATQTTKVEDLARISLRAGPLYINVDQTKEHSTVEGLEQGYVICDEDKRFLLLFSFLKR 353

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV    ++L      V++L G++ QQ R+N      + +    I T
Sbjct: 354 NLKKKVIVFFSSCNSVKYHAELLNYIDLPVLSLHGKMKQQARTNTFFEFCNAKQGTLICT 413

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P ++  +  +    P + +HR GRT RA  KG S+  +  +       L +
Sbjct: 414 DVAARGLDIPSVDWSVSFDPPDAPTDYIHRVGRTARANAKGKSLLFLHPSEVGFLSHL-K 472

Query: 362 EANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA--- 417
            A V VV    P+ + A  +   ++++    +L+    D  +      A H    +    
Sbjct: 473 AARVPVVEFEFPASKVANIQALLEKLISQNYYLNKSAKDGYRSYLHAYASHSLRSVYDIN 532

Query: 418 -AGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                ++ ++ G   P  +      SGRD+     R +       D F+
Sbjct: 533 KLDLAKLAKSFGFAVPPRVDVTVGASGRDKKVQGRRTYGSQPRQNDRFR 581


>gi|212636318|ref|YP_002312843.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 180/358 (50%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY + T +Q   +   L  ++++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSNPIVTAVTEQGYTSPTPIQAKSIPVILSGRNLIAAAQTGTGKTASFVLPILQLL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELAVQV   +        +      GGV    +R+ L +G  
Sbjct: 66  SQTQRKKRIRALILTPTRELAVQVEANIALYGKHLALTSMAMYGGVDAKPQRQRLLDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   L  +VLDEAD MLD+GF +DI+ I+D  P  R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDELDILVLDEADRMLDMGFIEDIDKIMDKLPADRQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK      V +++ +       I+     V    +   + ++++ +    
Sbjct: 186 ATLSHQVKALAKTAIDKPVEISVIANTDSKPKIEQWLTTVDKDKKSALLSHLIKENSWHQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +       + G  SQ+ R   L   + G   + IAT VAAR
Sbjct: 246 ALIFIETKQGAAKLVSQLEKRGINAECIHGGRSQEVREKILADFKAGEIGLLIATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           G+D+ +L LVI+ +L    ++ +HR GRTGRAG  G +V ++ ++  +    +     
Sbjct: 306 GLDIDELPLVINYDLPYPADDYIHRIGRTGRAGANGEAVSLVSKDDFKNLCMIESRLG 363


>gi|195432312|ref|XP_002064167.1| GK20023 [Drosophila willistoni]
 gi|194160252|gb|EDW75153.1| GK20023 [Drosophila willistoni]
          Length = 1234

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 192/365 (52%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +  +   
Sbjct: 541 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPQLED 599

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 600 GDGAIAIIMAPTRELCMQIGKDIRRFSKSLGLCPVCVYGGTGISEQIAELKRGAEIIVCT 659

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  +VLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 660 PGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 719

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++  AV++    +   ++ +   Y  A + 
Sbjct: 720 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHAVILNDDAKFFKLLELLGIYQEAGSI 779

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 780 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 839

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 840 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIVRALDLSG 899

Query: 368 VWEPA 372
              PA
Sbjct: 900 TPVPA 904


>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
           sapiens]
 gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
          Length = 496

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 54  IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 114 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 173

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 174 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 233

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 234 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 293

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 294 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 352

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 353 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 412

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 413 ACDESVLMDLKALLLEAKQKVPP 435


>gi|157368407|ref|YP_001476396.1| ATP-dependent RNA helicase RhlB [Serratia proteamaculans 568]
 gi|189040037|sp|A8G828|RHLB_SERP5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157320171|gb|ABV39268.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 428

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 194/387 (50%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLKMGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+      S   + +  A + L  P
Sbjct: 376 GHSIPVSKYNSDALLSDLPAPKRLARP 402


>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
 gi|167659826|gb|EDS03956.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
          Length = 393

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 126/390 (32%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     I +A+ E+GY+  T +Q+  +   L  +D+L  AQTG+GKT AF + +
Sbjct: 2   IMTFNELKITDPILKAIGEKGYLAPTPIQQKGIPVALDGRDMLGIAQTGTGKTAAFAIPI 61

Query: 59  ASTLLAENDRFSPASAP------------------LALAIAPTRELAVQVGRELEWLYAK 100
              L +   +  P   P                   AL + PTRELAVQ+G         
Sbjct: 62  LQHL-SSGMQAEPTDVPRRNRRGRNHGREYGVRPIRALILTPTRELAVQIGDSFSDYGKY 120

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160
            G+      GGV    +   L+ G  I++ TPGRL D I  + + +  +   VLDEAD M
Sbjct: 121 VGLKHLTIFGGVKQGPQVEALRGGVDILIATPGRLHDLIGQRFVELDAITHFVLDEADRM 180

Query: 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           LD+GF  DI+ +L   PK R+ L FSAT+   I  L+K+   D VRV +         ID
Sbjct: 181 LDMGFVADIKRLLPLLPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAID 240

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R   V   ++   +V++LR    K+ +VF  T+      +++L++   +  A+ G  SQ
Sbjct: 241 QRVYFVEKPEKKKLLVSLLREE-DKSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQ 299

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R   L   + G+ RV +ATD+AARGID+ +LE+VI+ +L   PE  +HR GRTGRAG 
Sbjct: 300 NHRQRVLTDFKSGKIRVMVATDIAARGIDIRELEIVINYDLPDVPETYVHRIGRTGRAGH 359

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            G ++     + +   + + R     +  E
Sbjct: 360 SGTALTFCTPDERPLMKDIQRLTGKKLNAE 389


>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
 gi|121743211|sp|Q0D1K3|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
          Length = 1181

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 107/423 (25%), Positives = 194/423 (45%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY N TS+Q   +   +  +DV+  A+TGSGKTVAF + +   +  +      
Sbjct: 561 LDVIDRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRP-LEN 619

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 620 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 679

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 680 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSAT 739

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +  ++    +I     +     +          +     +
Sbjct: 740 FPRNMEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLGNLYSSDEN 799

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 800 EDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 859

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 860 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERFSVDIAKA 919

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P  + +             FL+ ++  ++K          L + D E+ A
Sbjct: 920 LKQSGQKVPEPVQQMVDS-----------FLEKVKAGKEKASASGFGGKGLERLDQERDA 968

Query: 418 AGF 420
           A  
Sbjct: 969 ARM 971


>gi|298505039|gb|ADI83762.1| ATP-dependent RNA helicase RhlE [Geobacter sulfurreducens KN400]
          Length = 446

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 179/369 (48%), Gaps = 7/369 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F      +   ++  GY   T +Q   +   +  +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKSF-GFHPAVSGGVAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL IAPTRELA Q+      L  +T +      GGV V+ + + 
Sbjct: 62  RLQQGERGR-----VRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VV  PGRL DHI    +++S L+ +VLDEAD+M D+GF  DI  +L   P +R
Sbjct: 117 LKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPSRR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA+                    + +    V    +   ++ +LR
Sbjct: 177 QTLLFSATMPIDIRALAQEI-LVDPVTVQVGNVAPAVTVAHALYPVEQHLKTPLLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTYQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++    E  +HR GRTGRA R G +  ++  +       + 
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRSIE 355

Query: 361 REANVSVVW 369
           R    ++  
Sbjct: 356 RSLGATIER 364


>gi|195069805|ref|XP_001997032.1| GH23229 [Drosophila grimshawi]
 gi|193906224|gb|EDW05091.1| GH23229 [Drosophila grimshawi]
          Length = 649

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 3/349 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +++ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   L + L+ + 
Sbjct: 299 FDDQLLKSVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPLLTHLMDQR 358

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ G  
Sbjct: 359 E-LRPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNINVVCCYGGGSKWEQSKALEQGCE 417

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ L+FS
Sbjct: 418 IVVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQTLLFS 477

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    I  LA++   D VR+     N  + DI     +     +    +          
Sbjct: 478 ATFKKRIERLARDILTDPVRIVQGDLNEANQDITQHVYVFPNPLQKWNWLLCHLVKFLSE 537

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF + +A     +  L       + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 538 GGVLVFVTKKADAETVSNNLLLKEHNCLLLHGDMDQADRNKVIMQFKRKECDILVATDVA 597

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ARG+D+P +  VI+ +++ + +   HR GRTGRAG KG +  ++    +
Sbjct: 598 ARGLDIPHIRNVINYDIARDIDTHTHRIGRTGRAGEKGNAYTLVTDKDK 646


>gi|167041353|gb|ABZ06107.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005I08]
          Length = 416

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 194/380 (51%), Gaps = 4/380 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++ Q I  A+++ GY   T +Q   + P L  +D+L  AQTG+GKT AF L L
Sbjct: 1   MTSFAGLDLAQPILRAIADEGYTTPTPIQGKSIPPLLEGRDLLGVAQTGTGKTAAFALPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +  P   PLAL +APTRELA Q+G           +   V  GGVS+ R+ 
Sbjct: 61  LHRLADNAGKSHPRQ-PLALILAPTRELAGQIGDSFRTYGRHLRLRTGVVFGGVSIRRQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G H++V TPGRL D +    L +  ++  +LDEAD MLD+GF  D++ I  + PK
Sbjct: 120 QTLARGVHVLVATPGRLIDLMNRGDLRLDAVEVFILDEADRMLDMGFIRDVKKITAALPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+  ++  LA +   + VRV  A  +     +D   + V    +   +  +
Sbjct: 180 RRQTLLFSATMPKSVQGLAADLLSNPVRVEAAPASTTVEKVDQMVLFVPKDKKRALLGEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T+   +R  + L +      A+ G  +Q  R  AL   R GR R  
Sbjct: 240 LNDKDMARVLIFTRTKHGANRVARYLHDRGIHSDAIHGNKAQNARQRALDGFRSGRIRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ +L ++PE+ +HR GRT RAG  G+++       +     
Sbjct: 300 VATDIAARGIDVEGVTHVINFDLPNDPESYVHRIGRTARAGAAGIAISFCDSGERAHLRD 359

Query: 359 LFREANVSV-VWEPAPSVEA 377
           + +     V V E  P + A
Sbjct: 360 IEKTIRQKVPVIEDHPYLAA 379


>gi|170718552|ref|YP_001783396.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 2336]
 gi|189040032|sp|B0UUZ9|RHLB_HAES2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|168826681|gb|ACA32052.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 419

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 114/385 (29%), Positives = 200/385 (51%), Gaps = 12/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ +A+ E+G+   T +Q   L   L+ +D+   AQTG+GKT+AF  A    LL +N
Sbjct: 16  LHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  + +  P AL +APTREL VQ+  +  +L   TG+   +  GG    ++ + +  G  
Sbjct: 76  N-INSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGID 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           I++GT GR+ D+++   + + +++ VVLDEAD M DLGF  DI +       P++R  ++
Sbjct: 135 ILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTML 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  D   V I    +    I       +  D+   ++ +L     
Sbjct: 195 FSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWP 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         L+    +V  L+G++ Q++R + L+   DG   V +ATDVA
Sbjct: 255 ERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDVLVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 315 ARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLPAIEEYIG 374

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD 389
            S+          + + DA+ +++D
Sbjct: 375 HSIP---------VSQYDAKALIED 390


>gi|261218608|ref|ZP_05932889.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261321895|ref|ZP_05961092.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|260923697|gb|EEX90265.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
 gi|261294585|gb|EEX98081.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
          Length = 462

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|254714133|ref|ZP_05175944.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M644/93/1]
 gi|254716809|ref|ZP_05178620.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
           M13/05/1]
          Length = 535

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADTVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|327290128|ref|XP_003229776.1| PREDICTED: probable ATP-dependent RNA helicase DDX6-like [Anolis
           carolinensis]
          Length = 484

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 99  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 158

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 159 LDLKKDYI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 212

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 213 LDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 272

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 273 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 331

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 332 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 391

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 392 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 451

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 452 EQLGTEI--KPIPS 463


>gi|326774180|ref|ZP_08233462.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
 gi|326636319|gb|EGE37223.1| ATP-dependent RNA helicase DeaD [Actinomyces viscosus C505]
          Length = 558

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 211/476 (44%), Gaps = 20/476 (4%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+ I EAL  +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L
Sbjct: 70  KTFADFGVEPE-ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPL 128

Query: 59  ASTLL---AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               L    E     PAS  P AL I PTRELA QV  EL    AK  V +    GG + 
Sbjct: 129 LMDTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAY 188

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  DL+ GA +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL 
Sbjct: 189 EPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILA 248

Query: 175 SSPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            +   R  ++FSAT+  A+                 +   E      +          ++
Sbjct: 249 RTRADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNK 308

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R
Sbjct: 309 VEVVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFR 368

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  +
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 428

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R   + +   + +  EP  +        ++ +  D    + + G         L   
Sbjct: 429 DVPRWRIIAKALGLPI-EEPVETY-----HTSEHLFSDLSIPEKVTG-RLPRHKRTLEGL 481

Query: 412 DPEKI--AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           D E+I       +  R         +      G    +D  R  +    +    K 
Sbjct: 482 DAEEIEDLGETGKRGRKQSGRQGGRSERGRGRGGRGAKDSKRGERSRRSADGEAKP 537


>gi|145629971|ref|ZP_01785753.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
 gi|144984252|gb|EDJ91675.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
          Length = 415

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 199/393 (50%), Gaps = 13/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A  
Sbjct: 9   KRFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATF 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ +
Sbjct: 69  HHLLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQ 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSP 177
            ++ G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P
Sbjct: 129 AIERGVDILIGTTGRVIDYVKQGVICLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ 
Sbjct: 189 QARLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLT 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   +
Sbjct: 249 LMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGNLDI 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +       
Sbjct: 309 LVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLP 368

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            +      S+          + + + + +L+ P
Sbjct: 369 AIEEYIGHSIP---------VSQYETEALLELP 392


>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
          Length = 472

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 8/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  ALS+  + + T +Q+  + P +  +DVL  AQTGSGKT  F L    
Sbjct: 2   SFETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                       +    L ++PTRELA Q+ R              + +GG  + R+   
Sbjct: 62  R---NKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDF 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +V+ TPGRL DH++   +N+SH+  VVLDEAD MLD+GF  D+E IL +   +R
Sbjct: 119 LRRPWDLVIATPGRLIDHMQRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPER 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVN 237
           + L+F+AT+   I  L K YQKD V + + + +     ID   V ++   +       + 
Sbjct: 179 QTLLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAISHGAQKWGLLKTIL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     ++F  T+         L    F   AL G+ SQ +R+  L   R G+ R+
Sbjct: 239 TEPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRI 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +L  +PE+ +HR GRTGRAGR G ++       +    
Sbjct: 299 LVATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLR 358

Query: 358 RLFR 361
            + R
Sbjct: 359 DIER 362


>gi|299066924|emb|CBJ38119.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CMR15]
          Length = 613

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 157/590 (26%), Positives = 243/590 (41%), Gaps = 57/590 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 37  LDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQP 96

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P +                  P  L + PTRELA+QV             +  A  
Sbjct: 97  EPQRPRADGPQQRVKGRRPRPEPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 156

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 217 IEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFTDD 276

Query: 229 -SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 277 LSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTL 336

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 337 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +      +  R+ R  +  +       +E  R    +                       
Sbjct: 397 VNHGDTFQWRRIERFVDRRIDATVVEGLEPKRSPKPRSGGPRAGGDRGGYRGNGGGNGGG 456

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             +   +  AA      R G       +           RD     +   G R       
Sbjct: 457 NWRGQRDGYAA------RTGNGGNGGNSEGRFQRSFGGDRDSFAPRRDDRGDRGTGYQGG 510

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKL 527
                 G++  A  R       R+                           D      + 
Sbjct: 511 GQQRDWGNRDNAAPRQSYGQQTRNG--------------------------DRFDP--RQ 542

Query: 528 DKGIQLKYLGGEKPDFRGYKSSGFKSK--NSQDGATKRFKRF--KGASKN 573
            +  + +    ++P   GY +S        ++DGA +RF      GA + 
Sbjct: 543 PRSQEGRSDWQQRPARSGYGNSNGNGSSYGNRDGAPRRFGDDNSNGAPRR 592


>gi|195338535|ref|XP_002035880.1| GM15916 [Drosophila sechellia]
 gi|194129760|gb|EDW51803.1| GM15916 [Drosophila sechellia]
          Length = 681

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 10/377 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   ++  +I E + + GY   T +Q+  +      +D++  AQTGSGKT +F L +
Sbjct: 264 IKNFTSADLRGIIVENVKKSGYKVPTPIQKRAIPVITAGRDLMACAQTGSGKTASFLLPI 323

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S LL +         P A+ ++PTRELA+Q+  E      +T + + +  GG S   + 
Sbjct: 324 ISKLLDDPQDLEFGR-PQAVIVSPTRELAIQIFDEARKFAYETYLKIGIVYGGTSFRHQN 382

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G+H+++ T GRL D +    +     + VVLDEAD MLD+GF + +  ++     
Sbjct: 383 DCITKGSHVLIATLGRLLDFVDRAFVTFEDTRFVVLDEADRMLDMGFSEGMRKLMTHVTM 442

Query: 179 KRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + +    MFSAT    I  LA  +  + V V I       SD+      V+  ++    +
Sbjct: 443 RPQHQTLMFSATFPEDIQRLAGEFLNNYVFVAIGMVGGACSDVKQTIYEVSKFNKRAK-L 501

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +
Sbjct: 502 MEILREEADGTIVFVETKRGADFLASYLSETEFPTTSIHGDRLQSQREQALRDFKNGSMK 561

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
           V IAT VA+RG+D+ +++ VI+ ++  N ++ +HR GRTGR G  G +      +  R  
Sbjct: 562 VLIATSVASRGLDIKNIKHVINYDMPKNIDDYVHRIGRTGRVGNNGRATTFFDPDQDRVI 621

Query: 355 --RAERLFREANVSVVW 369
                ++   A  +V  
Sbjct: 622 AADLIKILDGAGQTVPE 638


>gi|67967591|dbj|BAE00278.1| unnamed protein product [Macaca fascicularis]
          Length = 529

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/396 (27%), Positives = 187/396 (47%), Gaps = 11/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L 
Sbjct: 128 FQCYPE-VMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 186

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 187 LQPTLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRK 245

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 246 GVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 305

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-NAIVNILRY 241
           M SAT             ++  +      +    S +    ++    ++  +    +   
Sbjct: 306 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMHTFLQNM 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 366 SSTDKVIVFVSRKAVADHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIAT 425

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 426 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 485

Query: 359 LFREANVSVVWEPAPSVEAIR----ERDAQRILQDP 390
           +   AN S+  E     E  +    +++ +R ++ P
Sbjct: 486 ILERANQSIPEELVSMAERFKAHQQKKEMERKMERP 521


>gi|19698881|gb|AAL91176.1| eukaryotic translation initiation factor [Arabidopsis thaliana]
          Length = 412

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTVEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|74656036|sp|Q58Z64|DHH1_CRYNV RecName: Full=ATP-dependent RNA helicase VAD1; AltName:
           Full=Virulence-associated DEAD box protein 1
 gi|54873506|gb|AAV41010.1| virulence associated DEAD box protein 1 [Cryptococcus neoformans
           var. grubii]
 gi|55982655|gb|AAV69745.1| virulence-associated DEAD Box protein [Cryptococcus neoformans var.
           grubii]
          Length = 616

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   +   G+   + +QE  +   L  +D+L  A+ G+GKT +F +   + 
Sbjct: 38  FEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNR 97

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           +       +  S   AL + PTRELA+Q  +  + L A    +  +   G +    +   
Sbjct: 98  IN------TSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILR 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ   HI+VGTPGR+ D        ++     V+DEAD++L   F   IE  L   P++R
Sbjct: 152 LQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLLSEDFMPVIEQTLALCPQER 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSAT    +      +      +N+  E             V  S + + +  +  
Sbjct: 212 QVMLFSATFPWTVKEFKDQHMVQPYEINLMDELTLKGV-TQYYAYVEESQKVHCLNTLFS 270

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + E  +       ++ Q  R+      R+G  R  + 
Sbjct: 271 KLQINQSIIFCNSTNRVELLAKKVTELGYSCFYSHAKMQQAHRNRVFHDFRNGMTRNLVC 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +     E+ LHR GR+GR G  G+++ ++    +    R+ 
Sbjct: 331 SDLLTRGIDIQAVNVVINFDFPRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLYRIE 390

Query: 361 REANVSVVWEPA 372
            E    +   PA
Sbjct: 391 SELGTEIAPIPA 402


>gi|3288677|dbj|BAA31233.1| rhlE [Vibrio alginolyticus]
          Length = 411

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 114/412 (27%), Positives = 198/412 (48%), Gaps = 9/412 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++  +    +       
Sbjct: 306 GIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           +            E  A R       L+ +  +++K  D    + + E+  A
Sbjct: 366 LERVEI-------EGFAPRKPVPISILNYVPKNKRKPQDNRPRRENSEQRDA 410


>gi|315127484|ref|YP_004069487.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315015998|gb|ADT69336.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 415

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/354 (33%), Positives = 188/354 (53%), Gaps = 2/354 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++  A+ +  Y   T++Q   + P L  KDV+ SAQTG+GKT AF L L   LL   
Sbjct: 11  LDPLLLTAIEQNNYTTPTAIQHKTIPPILAGKDVMGSAQTGTGKTAAFVLPLLHKLLNTT 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P  A   + + PTRELA QV    E     T +  A+  GG S+  + + L   A 
Sbjct: 71  KKDEPGIA-RVVILTPTRELAQQVFASFEKYAQGTDIKGALAYGGASIGPQIKAL-KTAQ 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I  IL   P  R+ L+FS
Sbjct: 129 VIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGDRQTLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT   ++  L+K   KD   + +   N    +++     V    +   + +++     + 
Sbjct: 189 ATFDDSVFELSKKLLKDPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHMIGMKNWRQ 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    +  K + +   +  ++ G+ SQ  R  AL   ++G  RV +ATDVAAR
Sbjct: 249 VLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALHNFKEGSTRVLVATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           G+D+P L+ VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E + 
Sbjct: 309 GLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEEIE 362


>gi|213585104|ref|ZP_03366930.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 327

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/326 (33%), Positives = 170/326 (52%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
            A++E+GY   T +Q+  +   L  +D++ SAQTG+GKT  F L L   L+         
Sbjct: 1   RAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITHQPHAKGR 60

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
               AL + PTRELA Q+G  +        +   V  GGVS++ +   L+ G  ++V TP
Sbjct: 61  RPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATP 120

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D      + +  ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FSAT S  
Sbjct: 121 GRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDD 180

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  LA+   ++ + + +A  N     +      V    +   +  ++     +  +VF  
Sbjct: 181 IKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTR 240

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+   +   + L +   +  A+ G  SQ  R+ AL   + G  RV +ATD+AARG+D+ +
Sbjct: 241 TKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEE 300

Query: 313 LELVIHAELSSNPENLLHRSGRTGRA 338
           L  V++ EL + PE+ +HR GRTGRA
Sbjct: 301 LPHVVNYELPNVPEDYVHRIGRTGRA 326


>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 1205

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 584 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 642

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA IVV T
Sbjct: 643 MEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGAEIVVCT 702

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 703 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 762

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +     +          +     +
Sbjct: 763 FPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLGDLYADDKN 822

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 823 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 882

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 883 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 942

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S    P P  + +             F++ ++  ++K          L + D E+ A
Sbjct: 943 LKQSGQPVPEPVQKLVNS-----------FIEKVKAGKEKASGSGFGGKGLERLDQERDA 991

Query: 418 A 418
           A
Sbjct: 992 A 992


>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis ER-3]
          Length = 1197

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 576 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 634

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA IVV T
Sbjct: 635 MEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGAEIVVCT 694

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 695 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 754

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +     +          +     +
Sbjct: 755 FPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLGDLYADDKN 814

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 815 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 874

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 875 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 934

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S    P P  + +             F++ ++  ++K          L + D E+ A
Sbjct: 935 LKQSGQPVPEPVQKLVNS-----------FIEKVKAGKEKASGSGFGGKGLERLDQERDA 983

Query: 418 A 418
           A
Sbjct: 984 A 984


>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
 gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
           dermatitidis SLH14081]
          Length = 1197

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 576 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 634

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA IVV T
Sbjct: 635 MEGPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGAEIVVCT 694

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 695 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 754

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +     +          +     +
Sbjct: 755 FPRNMEALARKTLTKPVEIIVGGRSVVAPEITQVVEVRNEDTKFVRLLALLGDLYADDKN 814

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 815 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 874

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 875 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 934

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S    P P  + +             F++ ++  ++K          L + D E+ A
Sbjct: 935 LKQSGQPVPEPVQKLVNS-----------FIEKVKAGKEKASGSGFGGKGLERLDQERDA 983

Query: 418 A 418
           A
Sbjct: 984 A 984


>gi|300795358|ref|NP_001177973.1| probable ATP-dependent RNA helicase DDX43 [Mus musculus]
 gi|149259807|ref|XP_001480973.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 1
           [Mus musculus]
          Length = 646

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 193/393 (49%), Gaps = 7/393 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P+ + E +   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 245 FQSYPE-VMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 303

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E           V V  GG    +  +D+  
Sbjct: 304 SQPLAREQRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGGDRDGQI-QDVSK 362

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 363 GVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 422

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I   L   
Sbjct: 423 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENM 482

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 483 SPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIAT 542

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R A     
Sbjct: 543 DLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELIN 602

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +   AN ++  E     E  +    +R ++  +
Sbjct: 603 ILERANQNIPEELVLMAERYKANKLKREMEKKM 635


>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Ailuropoda melanoleuca]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|224153793|ref|XP_002337398.1| predicted protein [Populus trichocarpa]
 gi|222838972|gb|EEE77323.1| predicted protein [Populus trichocarpa]
          Length = 390

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 188/372 (50%), Gaps = 9/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  
Sbjct: 18  TFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R 
Sbjct: 78  QLDY------GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K 
Sbjct: 132 LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKV 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 192 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 251

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 252 ETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 311

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  +  R    +
Sbjct: 312 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDDRMLFDI 371

Query: 360 FREANVSVVWEP 371
            +  NV V   P
Sbjct: 372 QKFYNVVVEELP 383


>gi|21555870|gb|AAM63951.1| Eukaryotic initiation factor 4A, putative [Arabidopsis thaliana]
          Length = 412

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR      T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKXDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|85118552|ref|XP_965469.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|74662807|sp|Q7SH33|PRP5_NEUCR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp-5
 gi|28927278|gb|EAA36233.1| hypothetical protein NCU02696 [Neurospora crassa OR74A]
 gi|38567223|emb|CAE76515.1| related to RNA helicase [Neurospora crassa]
          Length = 1194

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 208/452 (46%), Gaps = 15/452 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            + + I + +   G+   T +Q   L   +  +DV+  A+TGSGKT+AF L +    + + 
Sbjct: 568  LTRPILDTIESLGFEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPML-RHVKDQ 626

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            D  +     +AL + PTREL  Q+  +L+       + V    GG ++  +  +L+ GA 
Sbjct: 627  DPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAE 686

Query: 127  IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I+V TPGRL D +   G  +++LK    +VLDEAD M D+GF   +  I ++    R+ +
Sbjct: 687  IIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI 746

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            +FSAT+   I  L K   +D V + +   +    +I     ++    + N ++ +L    
Sbjct: 747  LFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELLGELY 806

Query: 244  AK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            A      +++F   +       + L    +  +++ G   Q++R++ +   + G   + I
Sbjct: 807  ADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILI 866

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT +AARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  I +  +  A  +
Sbjct: 867  ATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCASGI 926

Query: 360  FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             +    S    P   +  +R+   +++            D        L K D ++ AA 
Sbjct: 927  AKALEQSGQPVPD-RLNEMRKAWKEKVKAGKA------KDASGFGGKGLEKLDKDREAAR 979

Query: 420  FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
                        E+       +     +D ++
Sbjct: 980  MRERKTHKAEGEEDDVKEDAPAEDGEKKDKTK 1011


>gi|242086224|ref|XP_002443537.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
 gi|241944230|gb|EES17375.1| hypothetical protein SORBIDRAFT_08g021180 [Sorghum bicolor]
          Length = 618

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 135/373 (36%), Positives = 208/373 (55%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I E L+++G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 105 ISNKIVERLAKKGITKLFPIQRAVLEPAMQGRDMVGRAKTGTGKTLAFGIPILDAIIRHN 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +++ P   PLA+ +APTRELA QV RE       + +      GG  + ++ R L  G  
Sbjct: 165 EKYKPGKFPLAIVLAPTRELAKQVEREF---LDSSPLETLCVYGGTPIMQQIRQLNYGVD 221

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   L+++ ++ VVLDEAD+ML +GF  D+E IL+  P +R+ LMFS
Sbjct: 222 VVIGTPGRVIDLLKRGALSLAEIRFVVLDEADQMLSVGFDQDVETILERVPPQRQTLMFS 281

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  L + Y    V V++  E+ Q        + V+  +R    V    I  +  
Sbjct: 282 ATMPTWIRKLTQKYLNSPVTVDLVGEDDQKLAEGISLLSVSSENRQKPAVLGELIKEHAK 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          FQ  AL G++SQ +R   L   RDGR  + IATDV
Sbjct: 342 GGKCIVFTQTKR-DADRLSHSMSRSFQCEALHGDISQSQRERTLGGFRDGRFNILIATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ +      R    + R+ 
Sbjct: 401 AARGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAIVMYNYEQSRAVRVIERDV 460

Query: 364 NVSVVWEPAPSVE 376
                  P  +VE
Sbjct: 461 GCKFTELPKINVE 473


>gi|184200491|ref|YP_001854698.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580721|dbj|BAG29192.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 555

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 135/460 (29%), Positives = 211/460 (45%), Gaps = 28/460 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q I +AL+  G  +   +Q   L   L  +D++  A+TG+GKT+ FG+      +  +D 
Sbjct: 41  QDIVDALAAHGITSPFPIQAMTLPIALSGQDIIGQAKTGTGKTLGFGIPALQRAVGRDDA 100

Query: 68  ---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              + +   AP AL + PTRELAVQVG +L          VA   GG     +  +L+ G
Sbjct: 101 GWEQLAKPGAPQALIVVPTRELAVQVGSDLSIAAKTRNARVATIYGGRPYESQIAELEKG 160

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL D  R   L++SH++ VVLDEADEMLDLGF  D+E +L + P  R+ ++
Sbjct: 161 VEVVVGTPGRLIDLNRQHFLDLSHVRMVVLDEADEMLDLGFLPDVEKLLATVPAVRQTML 220

Query: 185 FSATISPAITTL--AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT+   +  +      +   +R     E     DI          D+D  +  IL+  
Sbjct: 221 FSATMPGPVVAMARRYMTRPMHIRAAAPDEGTTKKDIRQVIYRAHHLDKDEVVARILQAE 280

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   +I+F  T+ + ++    L    F    L G+L Q  R  AL+  R+ +  V +ATD
Sbjct: 281 GRGRSIIFTRTKRAAAKLADELIHRGFAAAPLHGDLGQGAREQALRAFRNSKVDVLVATD 340

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ D+  VI+ +   + +  LHR+GRTGRAG KG ++  +  +   R   + + 
Sbjct: 341 VAARGIDVEDVTHVINFQCPEDEKTYLHRTGRTGRAGNKGTAITFVDWDDVPRWRLIDKA 400

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + +  EP  +  +     ++ +  D L +      +       L   D E++      
Sbjct: 401 LELGIP-EPVETYSS-----SEHLYSD-LNIPRTAKGKLPKSQRTLEGLDAEEM------ 447

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                    E++          R     R    G      
Sbjct: 448 ---------EDLGDARPRRDDKRSSGGPRNGSGGRRRSGA 478


>gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
          Length = 633

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 196/389 (50%), Gaps = 20/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S ++     +  R S    PLA+ ++PTRELA Q+  E +    +TGV V V  GG  +
Sbjct: 218 ISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKRFSYQTGVKVVVAYGGTPI 277

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  I++
Sbjct: 278 NQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337

Query: 175 SSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                 R +     FSAT    I  LA ++  + + + +         I  R   V  SD
Sbjct: 338 QMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSD 397

Query: 231 RDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           + + ++++L               +VF  T+         L  + F   ++ G+ +QQER
Sbjct: 398 KRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQER 457

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  + GR  + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+ G+
Sbjct: 458 EVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGL 517

Query: 344 SVFVIPQ---NMQRRAERLFREANVSVVW 369
           +         ++ R    L +EAN  V  
Sbjct: 518 ATAFFNDGNTSLARPLAELMQEANQEVPE 546


>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
 gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
           troglodytes]
 gi|20532370|sp|Q9UJV9|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41; AltName: Full=DEAD box protein
           abstrakt homolog
 gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
 gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
           sapiens]
 gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
 gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
 gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
          Length = 622

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|126176118|ref|YP_001052267.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS155]
 gi|217975023|ref|YP_002359774.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS223]
 gi|304412472|ref|ZP_07394078.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307307131|ref|ZP_07586869.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|189040039|sp|A3D9I5|RHLB_SHEB5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797691|sp|B8E670|RHLB_SHEB2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|125999323|gb|ABN63398.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|217500158|gb|ACK48351.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304349114|gb|EFM13526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306910370|gb|EFN40801.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 438

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 208/391 (53%), Gaps = 14/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ 
Sbjct: 71  LLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L  G  I++GT GR+ D++R   + ++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEAN 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  + V+V IA E +   +I       +  ++   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KGMS+    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPA 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           +    N S+          +   D++ +L D
Sbjct: 371 IESYINHSIP---------VSNYDSEALLAD 392


>gi|114561845|ref|YP_749358.1| ATP-dependent RNA helicase SrmB [Shewanella frigidimarina NCIMB
           400]
 gi|114333138|gb|ABI70520.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 406

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 184/385 (47%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLKAMGHNTPTTIQQQTIPLAMDQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RF   +    L + PTRELA Q+ R    L     + +A+  GGV    +   L
Sbjct: 63  LIDFPRRFEGQA--RILVLTPTRELASQIHRYASHLATGLELNIAIITGGVPYGPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   +++ TPGRL +++     + + ++ +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 ADNVDLLIATPGRLMEYLDKDKFDATEVEILIIDEADRMLDMGFSSVVQSIAIEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+                 +      R      ++ V      + +   + +IL
Sbjct: 181 NMLFSATLEGNGVNRFARDLLTDPVMVDVEAPRSEKAKVHQWVHLADDQAHKFALLCHIL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       IVF  TR  V+    +L +       + G++ Q++R  AL     G   V +
Sbjct: 241 QQENVTRTIVFVKTREMVASLEGLLLKANIPCAFMRGDMEQKKRFQALGRFSKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRT RAG KG ++ ++  +  R   ++
Sbjct: 301 ATDVAARGIDVDDITHVINFDMPRSADAYVHRIGRTARAGAKGTAISLVEAHDMRIVSKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R   + +       +E +R +  +
Sbjct: 361 ERYIEIPLKRRV---IEELRPKHKE 382


>gi|225579808|gb|ACN94086.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|225579799|gb|ACN94078.1| unknown [Drosophila melanogaster]
          Length = 1195

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|153002454|ref|YP_001368135.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS185]
 gi|160877173|ref|YP_001556489.1| ATP-dependent RNA helicase RhlB [Shewanella baltica OS195]
 gi|189040040|sp|A6WTD3|RHLB_SHEB8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040041|sp|A9L5D5|RHLB_SHEB9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|151367072|gb|ABS10072.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160862695|gb|ABX51229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315269377|gb|ADT96230.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 438

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 125/391 (31%), Positives = 208/391 (53%), Gaps = 14/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ 
Sbjct: 71  LLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L  G  I++GT GR+ D++R   + ++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPEAN 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  + V+V IA E +   +I       +  ++   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEEKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCETLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KGMS+    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGMSISFACEEYALNLPA 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           +    N S+          +   D++ +L D
Sbjct: 371 IESYINHSIP---------VSNYDSEALLAD 392


>gi|329912990|ref|ZP_08275858.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gi|327545464|gb|EGF30669.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 410

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 181/361 (50%), Gaps = 1/361 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  DQLQRNLDTLGYSTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPQ 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S ++    L + PTRELA QV +      A   +   V  GGVS++ +   L+ G  ++
Sbjct: 70  VS-SNCVRVLVLVPTRELAEQVHQAFGEYGASLPLRTHVAYGGVSINPQMMKLRKGLDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    L+ +VLDEAD MLDLGF  +++ +  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQNAVKFEQLQTLVLDEADRMLDLGFSRELDEVFAALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  L+     + VR+ I+  N     I   A+ V    +    +++L+ H     +
Sbjct: 189 FSDEIRALSTTLLDNPVRIEISPRNTPVKTIKQWAIPVDKKRKPELFLHLLKKHRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L     +  A+ G+  Q  R  AL+  +    ++ +ATDVAARG+
Sbjct: 249 VFVKTRRGVDELVDILLAQGIRADAIHGDKPQPARLRALEGFKSRDVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  GM+V ++  +       +      ++ 
Sbjct: 309 DIDDLPQVVNFDLPIVAEDYIHRIGRTGRAGASGMAVSLLCADEAPLLAAIEMLTGQNLQ 368

Query: 369 W 369
            
Sbjct: 369 R 369


>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
 gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
          Length = 474

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +  I+F  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRL 435


>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
 gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
          Length = 474

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KTFKDLGIIDSLCDACTSLGYKTPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +  I+F  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRL 435


>gi|317051436|ref|YP_004112552.1| DEAD/DEAH box helicase domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316946520|gb|ADU65996.1| DEAD/DEAH box helicase domain protein [Desulfurispirillum indicum
           S5]
          Length = 522

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 179/366 (48%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +  A+ + G+   T +QE +L   +  KD +  AQTG+GK+ AF + +   LL+ 
Sbjct: 112 NLPEELMHAIYDLGFAYCTPIQEQVLPRAIEGKDAIGKAQTGTGKSAAFLMTIICRLLSR 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQNG 124
               +    P AL +APTRELA+Q+ ++   L   T + +     G     + +R     
Sbjct: 172 PQEKASIGRPRALILAPTRELAMQISKDAHDLCRYTPLKIVTLFGGMDMNKQRQRLENEA 231

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D    K + +  ++ +V+DEAD MLD+GF  D+  I++S+  K     
Sbjct: 232 VDIVVATPGRLLDLKYQKCVFLGKVEILVIDEADRMLDMGFIPDVRQIVNSTMPKHLRQT 291

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT+S  +T LA  +  +   V I  E      +D    +    ++   + N +   
Sbjct: 292 LLFSATLSNEVTRLASAWMTEPFMVEIEPEQVTVETVDQLVYITTREEKFTLLWNTINQA 351

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF + R      ++ L  +      LSGE+ Q +R   L+  R+G+  V +ATD
Sbjct: 352 NLTRVIVFANRRDETRHLSEKLTRYGVTNAILSGEVPQAKRIRTLENFREGKIAVLVATD 411

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  NPE+ +HR GRTGRAG  G+SV    +N       +   
Sbjct: 412 VAGRGIHVDSISHVINYNLPENPEDYVHRIGRTGRAGASGISVSFACENDSFYIPAIEDY 471

Query: 363 ANVSVV 368
               + 
Sbjct: 472 IGKKLT 477


>gi|262280249|ref|ZP_06058033.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258027|gb|EEY76761.1| cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD)
           [Acinetobacter calcoaceticus RUH2202]
          Length = 640

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 160/612 (26%), Positives = 249/612 (40%), Gaps = 53/612 (8%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+   T+VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KSFAEFSLHETLQQALEGLGFTTPTTVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L  +       DR    + P  L I+PTRELA QV ++   L      V    I G  
Sbjct: 63  NALAGQESVVPFKDRMKAVTQPNILVISPTRELAQQVSQDAIALVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + + +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFAKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDQVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           + +  +++ LMFSAT +  I  LA    KD +R+ I + +  ++DI            + 
Sbjct: 183 ELAANRKQTLMFSATFADRIIRLASCMMKDPMRIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLSDENLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 362

Query: 353 QRRAERLFR--EANVSVVW----EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + +   L    EA +SV      EP+P           R                     
Sbjct: 363 RGKIRALEEYLEARLSVSEIEGLEPSPPPARSGRDGGGRGRSGNGGGGRDGRRSGGGGFG 422

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG- 465
              + + E   + F R        P           R  F  + R  +     R   +G 
Sbjct: 423 GGRRFEGE---SNFKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGG 479

Query: 466 ----------SSWFSLSVGSKQK---------------AEARWLMPMLCRSSGINRQSIG 500
                     S       G   K                + R             ++S G
Sbjct: 480 FEDRPRREFTSDRPRREGGFNDKPRFESNDDNRGNRVDYKPRREAGF----GDRPKRSFG 535

Query: 501 AIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGA 560
               +P  +F     D     R     +   +  +    + +   +     + K S  G 
Sbjct: 536 G-EDRPRRSF----DDKPRGERPAFGGEDRPRRSFDDKPRGERPAFGGGDDRPKRSFGGE 590

Query: 561 TKRFKRFKGASK 572
            +  + F    +
Sbjct: 591 DRPRRSFDDKPR 602


>gi|195493240|ref|XP_002094331.1| GE20258 [Drosophila yakuba]
 gi|194180432|gb|EDW94043.1| GE20258 [Drosophila yakuba]
          Length = 789

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 179/357 (50%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 276 FDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVM-DQ 334

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P   P+ L +APTREL++Q+  E +       + V  C GG S   + + L+ GA 
Sbjct: 335 KQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAE 394

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR+ D ++ K  N+  +  +VLDEAD M  +GF   +  I +     R+ LMFS
Sbjct: 395 IIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQCLMFS 454

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT    I  LA++   D VR+     N  + DI     +     +    +  +++++   
Sbjct: 455 ATFKKRIERLARDVLTDPVRIVQGDLNEANQDITQSVYVFPNPLQKWNWLLVHLVKFLSE 514

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +      +  L    +  + L G++ Q +R+  +   +     + +ATDVA
Sbjct: 515 GSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQADRNKVITQFKRKECDILVATDVA 574

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ V++ + + + E   HR GRTGRAG KG +  ++    +  A  L R
Sbjct: 575 ARGLDIPHIKNVVNYDTARDIETHTHRIGRTGRAGEKGNAFTLVTDKDKEFAGHLVR 631


>gi|2745894|gb|AAB94769.1| putative RNA helicase RCK [Mus musculus]
          Length = 453

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 178/374 (47%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 73  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    G  ++  +   
Sbjct: 133 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGPTNLRDDIMR 186

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 187 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 246

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 247 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 305

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+       +G  R  + 
Sbjct: 306 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLVC 365

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 366 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSIE 425

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 426 EQLGTEI--KPIPS 437


>gi|320353576|ref|YP_004194915.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320122078|gb|ADW17624.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 411

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 197/371 (53%), Gaps = 6/371 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +  P+ +G+ ++E G+   T +QE  L   L  KDV    QTG+GKT AF + L   
Sbjct: 3   FEQLALPEPLGKGIAEAGFTECTPIQELTLPLTLGGKDVAGRGQTGTGKTAAFLITLFDR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL  N   SP   P AL +APTREL VQ+ ++   L    G  +    GGV  +++R  L
Sbjct: 63  LLKNNPPASPN--PRALILAPTRELVVQIHQDALLLGKHCGFSIQAAYGGVDYNKQREAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +++GTPGRL D ++ K   ++ ++ +V+DEAD M DLGF  D+ F+L   P   +
Sbjct: 121 RTGVDVLIGTPGRLIDFLKQKIYTLADIEMLVIDEADRMFDLGFIGDLRFLLRRLPAFDK 180

Query: 182 ML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               MFSAT++  +  LA  +     +V+++ ++     I+     V+  ++   ++ +L
Sbjct: 181 RQNLMFSATLNHRVMELAYEFMNMPEKVSVSGDSMTADKIEEILFHVSSKEKFPLLLGLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R  G +  ++F +T+    R    L  +      +SG+++Q++R   ++  + G+  + I
Sbjct: 241 RREGMERTMIFVNTKREGERLQARLMANDHPCRLISGDVAQEKRLRIMRDFKAGKLPMLI 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+ +  +  VI+ +L  + E+ +HR GRT RAG +G ++ +  +      E +
Sbjct: 301 ATDVASRGLHIEGVSHVINYDLPEDCEDYVHRIGRTARAGAEGKAISLADETGVLSLEAI 360

Query: 360 FREANVSVVWE 370
                  +  E
Sbjct: 361 EEYIGHPIPTE 371


>gi|218190304|gb|EEC72731.1| hypothetical protein OsI_06346 [Oryza sativa Indica Group]
          Length = 1382

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 190/375 (50%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 604 TFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFI 663

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + +P   P  L +APTRELA Q+  E       + V      GG S   + R+
Sbjct: 664 HL--RRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRE 721

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R
Sbjct: 722 LERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNR 781

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +T +A +  KD V+VNI S +    +  I     +V   D+   +  I
Sbjct: 782 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 841

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   ++ G+ SQ ER N L   R GRA + 
Sbjct: 842 LRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 901

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S     +   + A  
Sbjct: 902 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 961

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  E
Sbjct: 962 LVKVLEGANQHVPPE 976


>gi|195131547|ref|XP_002010212.1| GI14822 [Drosophila mojavensis]
 gi|193908662|gb|EDW07529.1| GI14822 [Drosophila mojavensis]
          Length = 963

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 193/382 (50%), Gaps = 16/382 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  I + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 238 FEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 297

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 298 ISNQPP-LMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 356

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 357 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 416

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+++M+SAT    +  LA ++  D +++NI S N   + +I     +   +++   +V +
Sbjct: 417 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQLLVRL 476

Query: 239 LRYHGAK-------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           L+   +          I+F  T+  V    +++    +   ++ G+ SQ ER + L+  R
Sbjct: 477 LKEITSPSNNGGSNKIIIFVETKIKVEDILQIIRNEGYVATSIHGDKSQSERDSVLKDFR 536

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +      +
Sbjct: 537 NGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPD 596

Query: 352 MQRRAERL---FREANVSVVWE 370
             ++A  L     EA  +   E
Sbjct: 597 NAKQARELISVLEEAGQTPSQE 618


>gi|119192364|ref|XP_001246788.1| probable ATP-dependent RNA helicase [Coccidioides immitis RS]
 gi|118572554|sp|Q1EA54|HAS1_COCIM RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 604

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 213/470 (45%), Gaps = 14/470 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P +  +DVL +A+TGSGKT++F +     L   
Sbjct: 130 NLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEML--S 187

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 188 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGV 247

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 248 NLLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTM 307

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 308 LFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 367

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 368 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLIC 427

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 428 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 487

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            ++A V VV    P+ + +  +   ++++    +L+    D  +      A H    +  
Sbjct: 488 -KDARVPVVEFEFPAKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFD 546

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 +++ +           +SL +   R +  +     G   R   K
Sbjct: 547 VNKLDLVKVAKGFGFPTPPRVDISLGASMSRDKKQTSRRNYGSQPRHAPK 596


>gi|297612409|ref|NP_001068490.2| Os11g0689400 [Oryza sativa Japonica Group]
 gi|77552592|gb|ABA95389.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
 gi|255680379|dbj|BAF28853.2| Os11g0689400 [Oryza sativa Japonica Group]
          Length = 1398

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 190/375 (50%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 605 TFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFI 664

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + +P   P  L +APTRELA Q+  E       + V      GG S   + R+
Sbjct: 665 HL--RRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRE 722

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R
Sbjct: 723 LERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNR 782

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +T +A +  KD V+VNI S +    +  I     +V   D+   +  I
Sbjct: 783 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 842

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   ++ G+ SQ ER N L   R GRA + 
Sbjct: 843 LRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 902

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S     +   + A  
Sbjct: 903 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 962

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  E
Sbjct: 963 LVKVLEGANQHVPPE 977


>gi|45382659|ref|NP_990039.1| probable ATP-dependent RNA helicase DDX4 [Gallus gallus]
 gi|9967268|dbj|BAB12337.1| Cvh [Gallus gallus]
          Length = 662

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 175/368 (47%), Gaps = 10/368 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N  Q + + +S+ GY  LT VQ+  +      +D++  AQTGSGKT AF L +   
Sbjct: 238 FEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDR 297

Query: 62  LLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           ++ +     F     P  + +APTREL  Q+  E       T +   V  GG       R
Sbjct: 298 MMKDGVTASFPKQQDPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIR 357

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G +I+  TPGRL D I    +++  +K +VLDEAD MLD+GF  D++ ++      
Sbjct: 358 QIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMP 417

Query: 180 RRMLMFSATI-----SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +    +                +  + D + + I +     SD+    + V    + + 
Sbjct: 418 SKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNILQVPRLSKRDK 477

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ IL+  G +  +VF  T+         L +      ++ G+  Q+ER  AL+  R G+
Sbjct: 478 LIEILQSTGGERTMVFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGK 537

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
            ++ +AT VA+RG+D+ +++ VI+ +L +  E+ +HR GRTGR G  G +V     Q+  
Sbjct: 538 CQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCGNTGKAVSFFDDQSDG 597

Query: 354 RRAERLFR 361
              + L +
Sbjct: 598 HLVQSLLK 605


>gi|312210932|emb|CBX91018.1| hypothetical protein [Leptosphaeria maculans]
          Length = 516

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 112/383 (29%), Positives = 184/383 (48%), Gaps = 11/383 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + +A     +   T +Q   +   L  +DV+  A+TGSGKT AF L + 
Sbjct: 87  KTFADLGVREELCDACENLKFTTPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPIL 146

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +        A   L +APTRELA Q+ ++++ L +   V  A  +GG+ +  +  
Sbjct: 147 QALLDKPQ------ALFGLILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAI 200

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH+      ++ HLK +VLDEAD +LDL F   ++ IL   P+
Sbjct: 201 ALSKRPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILRVLPR 260

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +   L  +   S   +      Q        +S ++  S +  R + +    +D  ++
Sbjct: 261 DGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYLFIPHKHKDLYLI 320

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +     I+F  T     R   +L    F  + L G+LSQ  R  AL   +     
Sbjct: 321 HLLTDNIGHPTIIFTRTVNETERIAILLRALGFGAIPLHGQLSQSARLGALNKFKTKSRD 380

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G +   + Q      
Sbjct: 381 ILVATDVASRGLDIPAVDLVVNLDLPSDSQTYVHRVGRTARAGKSGKAFSFVTQYDVEIW 440

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
            R+       +  E     EA++
Sbjct: 441 LRIEHALGKKIEEEVVDKDEALQ 463


>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
 gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
          Length = 454

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 204/418 (48%), Gaps = 10/418 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L + 
Sbjct: 24  STFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+         +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++  
Sbjct: 84  QELLSNRQA---EQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVL 140

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    HIVVGTPGRL DH    KG ++  +K +VLDEAD++L++ F   ++ IL   PK
Sbjct: 141 SIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR  +FSAT++  +  L +   ++  +V  AS+      +      V   D+D  ++++
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHV 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T  S      +L     + +++SG++SQ +R  AL   +     + 
Sbjct: 261 LNERQDSMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNIL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q   +    
Sbjct: 321 ICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVL 380

Query: 359 LFREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +     +        E +  +    DA+RI    L         +K  D      D
Sbjct: 381 IEKLLGKQIDQRKVDRDEVMILKGPISDAKRIALTKLKDSGGHKKRRKAGDDDEEVED 438


>gi|194763447|ref|XP_001963844.1| GF21236 [Drosophila ananassae]
 gi|190618769|gb|EDV34293.1| GF21236 [Drosophila ananassae]
          Length = 1211

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 516 MDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLED 574

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ G+ I+V T
Sbjct: 575 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGSEIIVCT 634

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 635 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 694

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 695 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQHVVILNDDAKFFKLLELLGIYQEAGSI 754

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 755 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 814

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 815 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGQAFTFITPEQSRYAGDIIRALDLSG 874

Query: 368 VWEPA 372
              PA
Sbjct: 875 TLIPA 879


>gi|90424330|ref|YP_532700.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
 gi|90106344|gb|ABD88381.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
          Length = 503

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 191/365 (52%), Gaps = 6/365 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY   T +Q+  +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 15  LSDKVLAAVAATGYTTPTPIQDQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLTLLEKGR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  
Sbjct: 75  AR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 132 VLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIVNILRYHG 243
           AT+   I  + + +  + V++ ++        +    V         R+     +     
Sbjct: 192 ATMPNEIRRITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAKD 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ AL   R G   + +A+DV
Sbjct: 252 LQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRKGELPILVASDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  VI+ ++  +P++ +HR GRTGRAGR G ++ ++  +  +    + +  
Sbjct: 312 AARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGRAGRAGTAISIVCPSDTKSIAAIEKLI 371

Query: 364 NVSVV 368
              + 
Sbjct: 372 GQDIP 376


>gi|326796106|ref|YP_004313926.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546870|gb|ADZ92090.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 460

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 198/380 (52%), Gaps = 12/380 (3%)

Query: 1   MKIFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           M  F +     +P  + + L + G+   T VQE  L   L  KD+L  AQTGSGKT+AF 
Sbjct: 1   MSNFSHSLPLALPSELTKLLGDMGFKGFTPVQEQCLPDILEGKDLLAQAQTGSGKTLAFA 60

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSV 114
           + L   +           +  AL + PTRELA QV +E+  +      +  +   GG+  
Sbjct: 61  IGLLLRINP------RYFSTQALIMCPTRELADQVAKEIRRVARFMNNIKVLTLCGGMPF 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GAHIVVGTPGRL +H+R + L++ +L  +VLDEAD MLD+GF D I  ++ 
Sbjct: 115 GPQIGSLEHGAHIVVGTPGRLLEHLRKRTLSLQYLNTLVLDEADRMLDMGFVDSIREVVL 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +P  R+ L+FSAT    I  ++  +Q +  ++ I        DI         + +   
Sbjct: 175 ETPSTRQTLLFSATYGDNIEEISNEFQNNPSQIQIEVNQDLKPDIKQFFARTEKAQKYET 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++ L Y G + AIVFC+T+A        L E     VA+ G+L Q++R   L    +  
Sbjct: 235 LLDSLAYFGPRQAIVFCNTKADTQAVADFLNEQSVSTVAIHGDLEQKQRDQVLVRFANKS 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + +ATDVAARGID+ +++LVI+ + + + +   HR GRTGRAG  G ++  I      
Sbjct: 295 ACIMVATDVAARGIDVKEIDLVINFDTTRDIDVHTHRIGRTGRAGHSGQALSFITDKDDY 354

Query: 355 RAERLFREANVSVVWEPAPS 374
           + + +    +++  +   P 
Sbjct: 355 KLKGIIERFDITPEFIDLPE 374



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           S       +  +   G K K     ++  L    G+ + ++G I +     +V V A   
Sbjct: 378 SYSLTPEMATIAFDAGRKNKLRPGDILGALTAGIGLEKSAVGKIDIYDFQAYVAVEAQQA 437

Query: 519 DLLRRTV--KLDKGIQLK 534
             + +++  K  KG  +K
Sbjct: 438 RKVVKSLANKKIKGRTIK 455


>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
          Length = 688

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 174/382 (45%), Gaps = 16/382 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P+ +   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L + +
Sbjct: 232 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 291

Query: 61  TLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+    ++ +FS    P A+ + PTREL  Q+  E       T V   V  GG S++ +
Sbjct: 292 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQ 351

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDLQ G HI++ TPGRL D I    + + H++ V+LDEAD MLD+GF  +I  +  S  
Sbjct: 352 IRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPG 411

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    D +R +             +D+    + V   D+ 
Sbjct: 412 MPSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKR 471

Query: 233 NA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +           +VF  T+        +L++      ++ G+  QQER  AL+  
Sbjct: 472 AKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDF 531

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +     + IAT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +      
Sbjct: 532 KSAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDN 591

Query: 351 N----MQRRAERLFREANVSVV 368
           N    + R   ++  EA   V 
Sbjct: 592 NKDGELARSLVKILSEAQQEVP 613


>gi|154340487|ref|XP_001566200.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063519|emb|CAM39700.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 389

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + + + +   GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L  
Sbjct: 18  TFEAMGLKEDLLKGMYRFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                         P AL ++PTRELAVQ       +    G+    CIGG S   + R 
Sbjct: 78  ACDPHT------REPQALILSPTRELAVQTQDLCNNIGHHMGLKAYACIGGKSTEEDIRR 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG HIV GTPGR+ D IR K L ++ LK +VLDEADEML  GF+  I  I    P  +
Sbjct: 132 LENGVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMIPPLQ 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +   +  +    K   + A  +    E    S   Y   +    ++ + ++ +  
Sbjct: 192 IILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVRQYFVSVDEEKNKFDVLMELYD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VFC+TR  V +  K +    F VVA+ G++ Q ER   ++  RDG +RV I 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFTVVAMHGDMPQAERDEIMRQFRDGHSRVLIT 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  + LV++ +L    E  +HR GRTGR GR G+++  +  +  R    + 
Sbjct: 312 TDLWARGIDVERVSLVLNYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 372 QFYATQIEELPA 383


>gi|41055130|ref|NP_957372.1| eukaryotic initiation factor 4A-III [Danio rerio]
 gi|82209617|sp|Q7ZVA6|IF4A3_DANRE RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|28277876|gb|AAH45939.1| Eukaryotic translation initiation factor 4A, isoform 3 [Danio
           rerio]
 gi|182892106|gb|AAI65833.1| Eif4a3 protein [Danio rerio]
          Length = 406

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 94  CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 148 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+  + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 328 STDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|156053564|ref|XP_001592708.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980]
 gi|160380639|sp|A7EJY3|DED1_SCLS1 RecName: Full=ATP-dependent RNA helicase ded1
 gi|154703410|gb|EDO03149.1| ATP-dependent RNA helicase DED1 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 678

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 195/385 (50%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   + + +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 188 FTNPPLDDHLIKNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    PA+A           P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 248 AFQTGPSPIPANAAGSFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYG 307

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I 
Sbjct: 308 GADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIR 367

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I         + R+ LMFSAT    I  LA+++ KD V +++        +I  +   V
Sbjct: 368 RIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYV 427

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 428 EDIDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERA 487

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S  
Sbjct: 488 LEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTA 547

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  + 
Sbjct: 548 FFNRGNRGVVRDLIELLKEANQEIP 572


>gi|85091492|ref|XP_958928.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
 gi|74696328|sp|Q7S2N9|HAS1_NEUCR RecName: Full=ATP-dependent RNA helicase has-1
 gi|28920320|gb|EAA29692.1| ATP-dependent RNA helicase DDX18 [Neurospora crassa OR74A]
          Length = 578

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 215/469 (45%), Gaps = 13/469 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 113 NLSDKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--S 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +   A+ + PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 171 SLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRRAEAEKLGKGV 230

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +++++++DEAD +L++GF D++  I+   PK+ R  M 
Sbjct: 231 NLLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEMRQIIKILPKEDRQTML 290

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       V V+   +      +D   V+V    R   + + L+ 
Sbjct: 291 FSATQTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVVVDADKRFLLLFSFLKK 350

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      + +    I T
Sbjct: 351 MQKKKVIVFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 410

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +  N       L 
Sbjct: 411 DVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPNELGFLAHL- 469

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V VV    P  + +  +   ++++    +L+    D  +      A H    +   
Sbjct: 470 KAAKVPVVEYDFPKSKILNVQSQLEKLIGQNYYLNQSAKDGYRSYLHAYASHSLRSVFDI 529

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                +++ ++   +      ++L S   R +  +     G   + N  
Sbjct: 530 HKLDLVKVAKSFGFSTPPRVDITLASSMSRDKKQTSRRAYGSQPKQNRH 578


>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 442

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/359 (33%), Positives = 183/359 (50%), Gaps = 6/359 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L   GY   T +Q A +   L  +D+L  AQTG+GKT AF L L   L+  
Sbjct: 12  HLHPRLDQGLQAAGYTTPTPIQRAAIPAALAGRDLLGLAQTGTGKTAAFVLPLLHRLMD- 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P S   AL +APTRELA Q+  E+  L   TG+  A   GGV +  + R L+ GA
Sbjct: 71  ----GPRSCVRALVVAPTRELAEQIHGEIGVLGRATGLRSATVYGGVGMAPQARALRGGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL DH+      ++ L+ +VLDEAD M D+GF   +  ++   P+  + L+F
Sbjct: 127 EIIVACPGRLLDHLERGTGTLAKLEVLVLDEADHMFDMGFLPAVRKLVGRVPEGAQRLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P +  LA+   +  V + I       +   +    VA   +   + ++LR+H  +
Sbjct: 187 SATMPPELRRLAEALLRAPVTLQIGRTEAAATV-SHALYPVAREQKTALLKHLLRHHDIR 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+    R  + L    F   +L G LSQ +R  AL   R G   V +ATD+AA
Sbjct: 246 SALVFTRTKRGAKRLAESLERDNFFATSLQGNLSQTKRQKALDAFRAGEVHVLVATDIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           RGID+  +  V + ++ +  E   HR GRTGRA R G +   +  + +    ++ R   
Sbjct: 306 RGIDVARVSHVFNYDVPTTAEAYTHRIGRTGRAARTGEACTFVTPDDEGVVRQIERALK 364


>gi|306838409|ref|ZP_07471254.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
 gi|306406549|gb|EFM62783.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. NF
           2653]
          Length = 455

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 17  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 77  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 136 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 196 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 256 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 316 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 375

Query: 369 WEPAP 373
            + AP
Sbjct: 376 IKDAP 380


>gi|306843924|ref|ZP_07476519.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
 gi|306275679|gb|EFM57403.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO1]
          Length = 455

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 17  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 77  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 136 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 196 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 256 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 316 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 375

Query: 369 WEPAP 373
            + AP
Sbjct: 376 IKDAP 380


>gi|300121162|emb|CBK21543.2| unnamed protein product [Blastocystis hominis]
          Length = 627

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/358 (30%), Positives = 182/358 (50%), Gaps = 4/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A++E G+   T +Q   +   L  KD+  +A+TGSGKT A+ L +   LL +N
Sbjct: 177 LSRPLLRAVNEMGFTTPTPIQARCIPLALAGKDICAAAKTGSGKTAAYLLPILERLLYKN 236

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +     +    L +APTRELA QV      L   T +   + +GG+ +  +  DLQ    
Sbjct: 237 NA---QNLIRVLIVAPTRELAQQVHTIATKLTKYTSITCCLVVGGLPLQAQAVDLQRRPD 293

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV TPGR+ DH      +++  ++ V+LDEAD +L+LGF +++  +L   P KR+ L+F
Sbjct: 294 IVVCTPGRMIDHVHNSMSVDLDDVEVVILDEADRLLELGFTEELHELLRLCPVKRQTLLF 353

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ L     +  VRV +   N+    +     +   S R   +++I+  H   
Sbjct: 354 SATMTDDVSDLISLSLQKPVRVFVDPVNQVVDRLVQFIRVKDESLRTAMLLSIITRHFKT 413

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F   +A       +L     +   L G L+Q +R  AL           IATDVAA
Sbjct: 414 ETIIFAERKAEAHLLHIILGLLGLKSAELHGNLNQTQRLRALDRFSKKEVDFLIATDVAA 473

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           RG+D+  ++ VI+  +       +HR GRT RAG  G +V  + ++ +   ++L ++A
Sbjct: 474 RGLDIKGVQTVINLHMPKEEATYIHRVGRTARAGHAGRAVTFVEEDRRLLMKKLVKQA 531


>gi|281206116|gb|EFA80305.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 858

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 24/394 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I EA+++ GY   + +Q   +   L  +DVL  A+TGSGKT AF + +   +  + 
Sbjct: 439 LPREILEAIAKMGYEKPSPIQMQAIPIALWGRDVLGIAETGSGKTAAFVIPMLVYISKQP 498

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             ++ + A  P AL +APTRELA+Q+ +E        G      +GG  +  +   L  G
Sbjct: 499 RLNKETEADGPYALVMAPTRELALQIEKEARNFANHFGFRCVALVGGQPIEDQIFQLSKG 558

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF   +               
Sbjct: 559 CEIVIATPGRLNDCLEKRYLVLNQCNYVVLDEADLMIDMGFEPQVVSVLDAMPSSFLKSE 618

Query: 170 -------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                  +    +   +  +L  +           K  ++    +   +           
Sbjct: 619 NEEEAEKQETDANRIYRTTILYSATMPPKVERLSRKYLRRAVHVIIGEAGKAVDRIKQNV 678

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             + +  D+   ++++L        I+F + +      +++++E      +L    SQ +
Sbjct: 679 VFVKSDHDKRVQLMDLLSNGPPPPIIIFVNKKKHCEIISEIVSECGMTSTSLHSSRSQDQ 738

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   +  R  V IATDVA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG +G
Sbjct: 739 REMALDGFKRRRYNVLIATDVASRGIHVEGVTHVINYDMPNNIEDYTHRIGRTGRAGMEG 798

Query: 343 MSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           M+   +          L      +    PA  ++
Sbjct: 799 MASSFLTDKDTEIMYDLKNMLTTTHNVVPAELLK 832


>gi|265984119|ref|ZP_06096854.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
 gi|264662711|gb|EEZ32972.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 462

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|265994970|ref|ZP_06107527.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766083|gb|EEZ11872.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 455

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 17  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 77  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 136 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 196 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 256 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 316 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 375

Query: 369 WEPAP 373
            + AP
Sbjct: 376 IKDAP 380


>gi|261325143|ref|ZP_05964340.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261752356|ref|ZP_05996065.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|261301123|gb|EEY04620.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|261742109|gb|EEY30035.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
          Length = 462

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|256113603|ref|ZP_05454423.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 535

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|256369477|ref|YP_003106985.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
 gi|255999637|gb|ACU48036.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
           CCM 4915]
          Length = 535

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|254719124|ref|ZP_05180935.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           83/13]
          Length = 535

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|254704340|ref|ZP_05166168.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|260566411|ref|ZP_05836881.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
 gi|260155929|gb|EEW91009.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
          Length = 503

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|261368147|ref|ZP_05981030.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
 gi|282569910|gb|EFB75445.1| cold-shock DEAD box protein A [Subdoligranulum variabile DSM 15176]
          Length = 395

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 125/364 (34%), Positives = 198/364 (54%), Gaps = 9/364 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+  E  ++   I  A    G+  +T +QE  +   +   D++  A TG+GKTVAFG+ +
Sbjct: 1   MQFTELTHVAPEIIRATQAMGFTEMTEIQEKAIPLMMDGHDMIAKAPTGTGKTVAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRE 117
            S +   + +      P A+ ++PTRELA Q+ ++L+ L      +  VC+ G +   ++
Sbjct: 61  LSKVDPASLK------PQAVVLSPTRELAQQIAQDLQNLAQFLPAIKIVCVYGGAGLDKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G  IVV TPGRL DH R   +++S ++ VVLDEADEML++GF  D+  I+D   
Sbjct: 115 QRQLKAGCQIVVATPGRLMDHYRHHAIDVSDVETVVLDEADEMLNMGFYKDVRHIIDLMK 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++ + MFSATIS  +  +   YQ +A  V++         I    +L    D+      
Sbjct: 175 HRKSLSMFSATISREVLDIGWLYQHNAAEVSVQPVEDSSPKIAQYKLLTTGRDKLADAAQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+   G K  ++FC+T+ +       LA   F V  L G+LSQ ER+  +   + G   V
Sbjct: 235 IIISEGYKRVMIFCNTKYNTGMLANQLARLNFNVDCLHGDLSQAERNRIMTRFKAGEIAV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D++ VI+ ++    E+  HR GRTGRA ++G S     +  Q+R +
Sbjct: 295 LVATDVAARGIDVSDVDAVINYDVPEENEHYTHRIGRTGRARKEGASYLFYTKEEQKRVD 354

Query: 358 RLFR 361
           +L R
Sbjct: 355 QLLR 358


>gi|198437555|ref|XP_002123307.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
           [Ciona intestinalis]
          Length = 461

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 169/372 (45%), Gaps = 10/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +DVL  A+ G+GK+ A+ + +   
Sbjct: 76  FEDFCLKRELLMGIFEKGWEKPSPIQEESIPIALSGRDVLARAKNGTGKSGAYLIPMLGR 135

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRD 120
                D         AL + PTRELA+Q  +    L    G   V V  GG ++  +   
Sbjct: 136 CDLNKDHI------QALVLVPTRELALQTSQIAIELSRHMGALNVMVTTGGTNLRDDIMR 189

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+N  HI+V TPGR+ D I  +   + H   +VLDEAD++L   F+  ++ I+   P  R
Sbjct: 190 LENSVHIIVATPGRILDLINKRIAKVDHCNMIVLDEADKLLSQDFKQMMDNIVTQLPVSR 249

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT    +      + K    +N+  E             V    + + +  +  
Sbjct: 250 QILLFSATFPITVKDFMLKHMKKPYEINLMEELTLKGV-SQFYAYVEEKKKVHCLNTLFS 308

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + E  +    +   + Q+ R+      R G  R  + 
Sbjct: 309 KLQINQSIIFCNSTHRVELLAKKITELGYSCFYIHARMKQEYRNRVFHDFRQGMCRNLVC 368

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+  + +VI+ +    PE  LHR GR+GR G  G+++ +I  + +    R+ 
Sbjct: 369 SDLFTRGIDIQAVNVVINFDFPKMPETYLHRIGRSGRYGHLGLAINLITYDDRFSLARIE 428

Query: 361 REANVSVVWEPA 372
            E    +   P 
Sbjct: 429 EELKTDIKPIPP 440


>gi|148560232|ref|YP_001258986.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
 gi|161619002|ref|YP_001592889.1| DEAD/DEAH box helicase domain-containing protein [Brucella canis
           ATCC 23365]
 gi|254701799|ref|ZP_05163627.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           5 str. 513]
 gi|256061140|ref|ZP_05451294.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
           5K33]
 gi|148371489|gb|ABQ61468.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
           ATCC 25840]
 gi|161335813|gb|ABX62118.1| DEAD/DEAH box helicase domain protein [Brucella canis ATCC 23365]
          Length = 535

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|117918867|ref|YP_868059.1| ATP-dependent RNA helicase RhlB [Shewanella sp. ANA-3]
 gi|189040046|sp|A0KS84|RHLB_SHESA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117611199|gb|ABK46653.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 439

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 123/370 (33%), Positives = 201/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   + + V +  GG S   +R+ 
Sbjct: 71  LLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYGGESYDVQRKT 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L  G  I++GT GR+ D++R   +N+  ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIRFLFRRMPSAD 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  + V+V IA E +   +I       +  D+   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +    N S+ 
Sbjct: 371 IETYINHSIP 380


>gi|299135820|ref|ZP_07029004.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298601944|gb|EFI58098.1| DEAD/DEAH box helicase domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 490

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 198/379 (52%), Gaps = 3/379 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I Q + + L+  G+V  T VQ   + P L   D+L +A TG+GKT++F + +   L   
Sbjct: 36  DISQPLKDRLAAAGFVTPTPVQAGAIPPALEGDDILATASTGTGKTLSFLIPMIDRLEEI 95

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +   +    +  LAL + PTRELA+QV      +         +  GG+S + +   L  
Sbjct: 96  SKPSTRGAKNPILALILLPTRELAMQVLDSYFKICPTLKSDAVLVCGGLSENTQLEQLSR 155

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D +R + +++  +  +VLDE D MLD+GF   I+ I+ + PK R+ +
Sbjct: 156 GPRLVVATPGRLEDFLRRRSVSLKDVDMLVLDEVDRMLDMGFLPAIKRIVQALPKDRQTM 215

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            +SAT+  +I  + ++Y  + VR+ I + ++    ++ R   V    +   +  +L+   
Sbjct: 216 CYSATLDASIREIVRDYVNNPVRIEIGTTSKPSDRVELRVYTVMQDQKLAQLDKMLKEEE 275

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+    R  K L +       + G+ SQ +R+ AL+    G+AR+ +ATDV
Sbjct: 276 GTY-LVFSRTKHGADRIAKKLEKAGHLTEVIHGDRSQSQRTAALRNFTMGKARILVATDV 334

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  V++ +L +  ++ +HR GRTGRAG KG++   +    +  A +L RE 
Sbjct: 335 AARGIDVSHIAHVVNYDLPNGSDDFVHRIGRTGRAGAKGVATTFVTPLEKGDARKLEREL 394

Query: 364 NVSVVWEPAPSVEAIRERD 382
            +   W  A       +R+
Sbjct: 395 KIKFQWHEADKNLEKEQRN 413


>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
          Length = 451

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/410 (27%), Positives = 215/410 (52%), Gaps = 10/410 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +   +  +   T +Q+  +   +  KDV+  A+TGSGKT AF + +  TLL    +
Sbjct: 33  DEVAQTCVDLKWSKPTPIQQKSIPIAIEGKDVIGLAETGSGKTAAFAIPVLQTLL----K 88

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA Q+  + + L +  G+  A  +GG+ +  ++  L    H++
Sbjct: 89  TPGGGRLSCLVMTPTRELAFQIREQFQALGSSIGLSCACIVGGIEMMSQQLALAKKPHVI 148

Query: 129 VGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH  + +G N+  LK +++DEAD +L+L F  +++ IL + P++R+ ++FSA
Sbjct: 149 VATPGRLVDHLEKTRGFNLKALKFLIMDEADRILNLDFEAEVDKILRAIPRERQTMLFSA 208

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+++I S+ +       + + +  + ++  +V++L      + 
Sbjct: 209 TMTAKVKKLQRAALKNPVKISINSKYKTVDKNIQKYMFIPEAHKECYLVSLLNELQGSSF 268

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F ST A  S   +++    +  V L G++SQQ+R  AL   +     + + TDVA+RG
Sbjct: 269 MIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALARFKGKSRSILVCTDVASRG 328

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P ++ VI+ ++ +N ++ +HR GRT RAGR G SV  + Q      +++       +
Sbjct: 329 LDVPHVDCVINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKIEAHIGKKL 388

Query: 368 VWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              P    E  A++ER  +      + +  I+ +E K       + D E+
Sbjct: 389 DQWPCEKDEVMALKERVDE---AKRIAVQEIKEEEGKRKSKKKRQFDEEQ 435


>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera sp.
           301]
 gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera sp. 301]
          Length = 466

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 134/377 (35%), Positives = 206/377 (54%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   + +AL+E GY   T +Q   +   L   D++  AQTG+GKT AF L L   LL   
Sbjct: 17  LAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAFALPLLQKLLPLA 76

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL + PTRELA+QV   ++     T +   V  GGV +  +   L+ G
Sbjct: 77  SSSASPAKHPVRALILTPTRELAIQVEESVKAYAKHTPLRSLVVYGGVDIKTQTPHLKTG 136

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DHI  K + ++ ++ +VLDEAD MLD+GF  D++ IL   PK+R+ LM
Sbjct: 137 VEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRMLDMGFMPDLKRILALLPKQRQNLM 196

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA  +      + +A  N  + ++  +   VA SD++  ++ +L+   A
Sbjct: 197 FSATFSNDIKKLADEFLTKPQLIEVARSNATNDNVTQKVYEVAQSDKETLLIQLLKAANA 256

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+ + SR ++ LA       A+ G+ +QQER  AL   + G     +ATDVA
Sbjct: 257 SQVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGTITALVATDVA 316

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L +VI+ E+ S PE+ +HR GRTGRAG  G+++  +     +    + +   
Sbjct: 317 ARGLDISELPMVINYEIPSAPEDYVHRIGRTGRAGALGIAISFVSPEEDKYIVEIEKLIK 376

Query: 365 VSVVWE----PAPSVEA 377
             +  E      PS +A
Sbjct: 377 RQIPKETVALEKPSSKA 393


>gi|125580822|gb|EAZ21753.1| hypothetical protein OsJ_05388 [Oryza sativa Japonica Group]
          Length = 516

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 194/388 (50%), Gaps = 13/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 78  LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 137

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 138 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 197

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 198 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 257

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 258 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 317

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 318 LQKTPPP-VLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 376

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 377 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 436

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD 382
             + L +EA   +    A   + + + +
Sbjct: 437 DLKHLLKEAKQRIPPVLAELNDPLEDEE 464


>gi|90409951|ref|ZP_01217968.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
 gi|90329304|gb|EAS45561.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           3TCK]
          Length = 462

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 205/372 (55%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L+  GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +
Sbjct: 10  NLHADLLKNLTSLGYESMTPIQAQSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GG+    +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+  L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+
Sbjct: 124 AHIIVGTPGRIEEHVRKGTLNLDDLEMLILDEADRMLEMGFQDSLDEIIDAAPQRRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A       V   + S +   S   +   +     R  A+  +L  H  
Sbjct: 184 FSATYPPQIKSIADRIMFKPVMAKVESTHDDSSIQQHFYKVDGNEQRLTALRLLLLKHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+      +  L ++ F  +AL G+L Q+ER  AL    +    V +ATDVA
Sbjct: 244 ESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVRFANKSTSVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+  L+ + E  +HR GRTGRAG KG++  +I      +   L    +
Sbjct: 304 ARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGVACSLISDKEHYKVAMLEDYLD 363

Query: 365 VSVVWEPAPSVE 376
            ++  E  PS++
Sbjct: 364 RAISGEALPSMD 375



 Score = 68.1 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
               +   +  G +QK     ++  L   +GI    +G I++  +  +V V ++ V    
Sbjct: 383 RPAMTTLQIDGGKRQKIRPGDILGALTGENGIAGAQVGKIQIFDNFAYVAVKSESVRAAM 442

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 443 KKLEDGK 449


>gi|170053024|ref|XP_001862487.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167873709|gb|EDS37092.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 935

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 188/380 (49%), Gaps = 12/380 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N P+ +   ++++G+ + T++Q       L  +D++  AQTGSGKT+A+ L   
Sbjct: 253 QTFDEGNFPEFVINEINKQGFPSPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYMLPAI 312

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
             +  +         P+ L +APTRELA Q+   +      +   +      GG     +
Sbjct: 313 VHIAHQKP-LQRGDGPIVLVLAPTRELAQQIQTVVRDFGTHSKPNIRYTCIFGGALKGPQ 371

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 372 VRDLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 431

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDN 233
             R++LM+SAT    +  LA+++  D +++N+ S N   +   ++ V +   +    +  
Sbjct: 432 PDRQVLMWSATWPKEVQALAEDFLHDYIQINVGSLNLSANHNIHQIVDICEENEKEGKLL 491

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +++  +        I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R G
Sbjct: 492 SLLKEIASDVNNKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHG 551

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +         
Sbjct: 552 KSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSFGTAYTFFTPGNG 611

Query: 354 RRAERL---FREANVSVVWE 370
           R+A  L     EA      E
Sbjct: 612 RQARELLSVLEEAGQQPTPE 631


>gi|145332383|ref|NP_001078148.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641919|gb|AEE75440.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 402

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 36  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 95  -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 150 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 209

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 210 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 269

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 270 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 329

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 330 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 389

Query: 366 SVVWEP 371
            V   P
Sbjct: 390 VVEELP 395


>gi|14594802|emb|CAC43286.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
          Length = 369

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 3   LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 62  -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 116

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 117 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 176

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 177 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 237 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 297 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 356

Query: 366 SVVWEP 371
            V   P
Sbjct: 357 VVEELP 362


>gi|143455555|sp|Q0E3X4|RH35A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 35A
 gi|51535964|dbj|BAD38045.1| putative DEAD-box protein abstrakt [Oryza sativa Japonica Group]
          Length = 627

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 194/388 (50%), Gaps = 13/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L E+G V  T +Q   L   L  +D++  A TGSGKT+ F L L    L E 
Sbjct: 189 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 248

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 249 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQL 308

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    
Sbjct: 309 DVVKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKA 368

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AK+     V VN+      + D+      V    R   ++  
Sbjct: 369 QRQTLLFSATMPKKIQNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 428

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       +VFC  +A V    + L     + VA+ G   Q+ER NA++  ++G+  V 
Sbjct: 429 LQKTPPP-VLVFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERENAIEFFKNGKKDVL 487

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 488 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 547

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD 382
             + L +EA   +    A   + + + +
Sbjct: 548 DLKHLLKEAKQRIPPVLAELNDPLEDEE 575


>gi|18400210|ref|NP_566469.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170503|sp|P41376|IF4A1_ARATH RecName: Full=Eukaryotic initiation factor 4A-1; Short=eIF-4A-1;
           AltName: Full=ATP-dependent RNA helicase eIF4A-1;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 4
 gi|16554|emb|CAA46188.1| eukaryotic translation initiation factor 4A-1 [Arabidopsis
           thaliana]
 gi|11994363|dbj|BAB02322.1| eukaryotic translation initiation factor; RNA helicase [Arabidopsis
           thaliana]
 gi|14594805|emb|CAC43288.1| translation initiation factor eIF-4A1 [Arabidopsis thaliana]
 gi|15293047|gb|AAK93634.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|15450486|gb|AAK96536.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|20259055|gb|AAM14243.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|20466101|gb|AAM19972.1| AT3g13920/MDC16_4 [Arabidopsis thaliana]
 gi|22655066|gb|AAM98124.1| unknown protein [Arabidopsis thaliana]
 gi|23397033|gb|AAN31802.1| putative eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|332641917|gb|AEE75438.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 412

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 187/366 (51%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|297676837|ref|XP_002816330.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Pongo
           abelii]
          Length = 621

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 298

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 299 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 359 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 418

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 419 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 477

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 478 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 537

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 538 ACDESVLMDLKALLLEAKQKVPP 560


>gi|242239282|ref|YP_002987463.1| ATP-dependent RNA helicase DbpA [Dickeya dadantii Ech703]
 gi|242131339|gb|ACS85641.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 457

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+  GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALPAEQLTTLNALGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L       +      +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHLD------AGRFNTQSLVLCPTRELADQVANELRRLARYMPNIKVLTLCGGVPFSI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HI+V TPGRL DH+  + +N+  L+ +VLDEAD MLD+GF D I+ ++   
Sbjct: 115 QRDSLTHAPHIIVATPGRLLDHLEKETVNLDALQTLVLDEADRMLDMGFADAIDAVIAHV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT   AI  ++   Q D + + I + +   +       +   S + + + 
Sbjct: 175 PDQRQTLLFSATWPDAIAAISHRIQHDPLVIEIDTVDELPAVEQQFYEVS-RSGKLDLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L      V+AL G++ Q++R   L    +G +R
Sbjct: 234 KLLSREQPASCVVFCNTKKDCQAVYDALTASHQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+V++ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVVNFELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    N+ + W P P+
Sbjct: 354 NALEEMLNLKLSWHPLPT 371



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG       LCAPEE    + +      +        G       
Sbjct: 320 WDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNLKLSWHPLPTGLRIIPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL--- 520
              +   +  G K K     ++  L    G++   IG I + P   +V V          
Sbjct: 380 ATMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKIAIHPTHAYVAVRQSVARHAWK 439

Query: 521 -LRRTVKLDKGIQLKYL 536
            L++     K ++++ L
Sbjct: 440 QLQQGKIKGKAVKVRLL 456


>gi|168067875|ref|XP_001785829.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662518|gb|EDQ49361.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 538

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +   I + ++   Y   T +Q   L   L  +D+L  A+TGSGKT AF L +
Sbjct: 109 IESFEDMCLHLSIMKDVTFHNYTTPTPIQAQALPVALSGRDLLGCAETGSGKTAAFSLPM 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               LA+         PLAL +APTRELA Q+ +E++       G   ++ +GG +++ +
Sbjct: 169 IQHCLAQPP-IRRGDGPLALVLAPTRELAQQIEKEVKAFSRSAEGFKTSIVVGGTNIYEQ 227

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  IVV TPGR  DH++    ++S +  VVLDEAD MLD+GF   I  ++ S P
Sbjct: 228 RSELRAGVEIVVATPGRFIDHLQQGNSSLSRVSYVVLDEADRMLDMGFEPQIREVMRSLP 287

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---- 233
           KK + L+FSAT+   I  LA+ Y    VRV +   +   +++      +   ++ +    
Sbjct: 288 KKHQTLLFSATMPEEIEALAQEYLNKPVRVKVGRVSSPTANVTQNLEKITEKEKIDSLLA 347

Query: 234 -----AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                   ++         IVF   +A     T  L E   +  AL G  SQ ER  AL+
Sbjct: 348 LLVDEHSQSLDSNQPPPLTIVFVERKARCDEVTDALVEQGLKATALHGGRSQSEREAALR 407

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +    
Sbjct: 408 DFRKGTTNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGASGRATSFY 467

Query: 349 PQNMQRRAERLFR 361
            +       ++ R
Sbjct: 468 TERDVFLVAQIRR 480


>gi|330837277|ref|YP_004411918.1| DEAD/DEAH box helicase domain-containing protein [Spirochaeta
           coccoides DSM 17374]
 gi|329749180|gb|AEC02536.1| DEAD/DEAH box helicase domain protein [Spirochaeta coccoides DSM
           17374]
          Length = 629

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 142/585 (24%), Positives = 258/585 (44%), Gaps = 41/585 (7%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F  +P    + E + + G+ +   VQE +L   L  KDV++ ++TGSGKT  F + +
Sbjct: 1   MK-FTELPLHHTVLEGIGQAGFSDCMPVQERVLPVSLAGKDVMIQSKTGSGKTAVFLITI 59

Query: 59  ASTLLAENDRF---------SPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVC 108
               +   +           +  S P+AL ++PTRELAVQ+  +   L A   G  V   
Sbjct: 60  LEKYVRAAEERAKAAKDSPEAEKSLPVALIVSPTRELAVQIEEDARILSATLPGYRVGCF 119

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GGV    + + +  G  + VGTPGRL D+ + + L+       V+DEAD M D+GF  D
Sbjct: 120 YGGVGYGGQDKLIAEGCDLYVGTPGRLLDYHKMRRLDFRMFDTFVVDEADRMFDMGFYPD 179

Query: 169 IEFILDSSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           I+ +  S     +R+ ++FSAT+S  +  LA +Y      + +  E    + I      +
Sbjct: 180 IQKMFSSMRPVSERQTMLFSATLSTRVRNLAWSYMSSPEEIEVQPEEITVNKIQQELYHI 239

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +  ++    + +L      NA++F +T+A      K L  + ++   L G++ Q++R + 
Sbjct: 240 SKDEKFRLFLQVLTKENPDNALIFTNTKAKSVEVCKRLLLNGYKAEYLMGDMPQKKRLST 299

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +  M+DG+ +  +ATDVAARG+ + DL+LV++ ++  + EN +HR GRT RAG+ G S+ 
Sbjct: 300 IDRMKDGKIKFLVATDVAARGLQIDDLQLVVNYDIPEDFENYVHRIGRTARAGKTGKSIT 359

Query: 347 VIPQNMQRRAERLFR--EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              +      E +    +  + VVW    S+  + ++ A +  +  +  +   G      
Sbjct: 360 FADEEYIYGLEAIENYIQMKIPVVWPEEGSLPDVEDKSAGKTFRQLVSREEYAG------ 413

Query: 405 DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 H  E I  G  R  R G   P   +       R+  R+  R     G      K
Sbjct: 414 ------HSHETI-PGGNRTGRRGTRGPSSRSGSKSEGKREGKREGKRERPAQGAQDSPRK 466

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
            ++   ++   +  A+A         + G    S  A+R +   ++ ++    ++     
Sbjct: 467 PAALPRVA---EDGAKA-----ATTPTGGGRAGSRQAMRSRGGKSYADIKNMSLEERMAY 518

Query: 525 VKLDKGIQLKYLGGEKPD---FRGYKSSGFKSKNSQDGATKRFKR 566
            K   G +       +      +  +  G + +  +     R ++
Sbjct: 519 YKKQYGGESSEADASRKTGNVRKDGRQQGDRPQGDRRREDSRTQK 563


>gi|307111380|gb|EFN59614.1| hypothetical protein CHLNCDRAFT_29172 [Chlorella variabilis]
          Length = 402

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 197/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   + + G+   +++Q+  + P  + +DV+  AQ+G+GKT    + L
Sbjct: 28  VSSFDAMGLREQLLRGIYQFGFEKPSAIQQRAVLPITQGRDVIAQAQSGTGKTSLIAITL 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       +      AL ++PTRELA Q  + +  +     V    CIGG SV  + 
Sbjct: 88  CQMLD------TTLREVQALVLSPTRELATQTEKNILAIGDHMAVQAHACIGGKSVGDDI 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG HIV GTPGR+ D I+ + L   ++K +VLDEADEML+ GF++ I  I    P 
Sbjct: 142 RKLENGVHIVSGTPGRVFDMIKRRSLRTRNIKTLVLDEADEMLNKGFKEQIYDIYRYLPP 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   +  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 202 ETQVVLVSATLPHEVLEMTHKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ + ++ F V A+ G++ Q+ER   +   R G  RV
Sbjct: 262 LYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVSAMHGDMPQKEREAIMDEFRKGATRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 322 LITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVAINFVKNDDIKILR 381

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 382 DIEQFYSTQIDEMPMNVADLI 402


>gi|271500546|ref|YP_003333571.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270344101|gb|ACZ76866.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 457

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 204/378 (53%), Gaps = 11/378 (2%)

Query: 1   MKIFENIPQVIGE---ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +  +  E    L+E GY+++T +Q A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALAAEQLTTLNELGYLSMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L A   +        +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHLDAGQFK------TQSLVLCPTRELADQVANELRRLARGMPNIKVLVLCGGVPFSI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HI+V TPGRL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLIHAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIHHA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT   AI  +++  Q+D + + I + +   +       +   + + + + 
Sbjct: 175 PAERQTLLFSATWPEAIAAISRRIQRDPLVIEIDTVDELPAVEQQFYEVS-RNGKLDLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L      V+AL G++ Q++R   L    +G +R
Sbjct: 234 KLLSREQPASCVVFCNTKKDCQAVYDALTHSNQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG +G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L     + + W P PS
Sbjct: 354 NALEEMLKMKLTWHPLPS 371



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +    + +       
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGEQGLAISLCAPEEAQRANALEEMLKMKLTWHPLP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G++   IG I + P   +V V 
Sbjct: 371 SGLRITPLEAAMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKITIHPMHAYVAVK 430

Query: 515 ADGVDLLRRTVKLDK 529
                 + + ++  K
Sbjct: 431 QSLARQVWKQLQQGK 445


>gi|11602713|emb|CAC18543.1| translation initiation factor 4A-like protein [Echinococcus
           multilocularis]
          Length = 403

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 182/373 (48%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+ + +   +   G+   +++Q+  +   +  +DV+  AQ+G+GKT    +A   
Sbjct: 31  TFDSMNLREDLLRGIYAYGFERPSAIQQRAIKQIILGRDVIAQAQSGTGKTATLAIASLQ 90

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +            L ++PTRELA+Q+ + +  L     V    C GG +V  + + 
Sbjct: 91  VLDIQ------LRDTQVLILSPTRELALQIQKVILVLGDFMNVQCHACYGGTNVGEDIKK 144

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G HIV GTPGR+ D I+ + L    +K ++LDEADEMLD GF++ I  +    P   
Sbjct: 145 LDYGQHIVSGTPGRVFDMIKRRNLRTRTIKLLILDEADEMLDKGFKEQIYDVYRYLPPGT 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D VR+ +  +      I    V +     +   + ++ 
Sbjct: 205 QVVLLSATMPHDILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLY 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++FC+TR         + +  F V  + G++ Q+ER   ++  R   +RV I
Sbjct: 265 DTLTVTQSVIFCNTRRKAEWLADKMCKSNFTVTVMHGDMVQKEREEIMRNFRSSESRVLI 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + +VI+  L +N E  +HR GR+GR GRKG+++  +     R    +
Sbjct: 325 TTDLLARGIDVQQVSMVINYGLPNNRELYIHRIGRSGRFGRKGVAINFVKNEDIRILRDI 384

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 385 EQYYSTQIDEMPM 397


>gi|51473847|ref|YP_067604.1| ATP-dependent RNA helicase RhlE [Rickettsia typhi str. Wilmington]
 gi|51460159|gb|AAU04122.1| probable ATP-dependent RNA helicase RhlE [Rickettsia typhi str.
           Wilmington]
          Length = 407

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 195/364 (53%), Gaps = 10/364 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +  AL        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  AFI--------KNKTTALILVPTRELATQIHSTLNKVTIAYKINSAVLIGGEPMFKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ +H+  + L I H+  +VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEDINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I    + V+  ++ +  +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNKEKFSE-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L     +  A+ G+LSQ +R+  +   R    R+ +A
Sbjct: 231 GNRVGSVIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRARVILSFRKLNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +   R   + 
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAID 350

Query: 361 REAN 364
           R  N
Sbjct: 351 RLVN 354


>gi|89069624|ref|ZP_01156963.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
 gi|89044822|gb|EAR50922.1| putative ATP-dependent RNA helicase protein [Oceanicola granulosus
           HTCC2516]
          Length = 406

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 194/369 (52%), Gaps = 4/369 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+     +   L+E+G    T +Q   +   L  +DVL  AQTG+GKT AFGL L  
Sbjct: 2   TFENLGLSPRLAARLAEQGLTAPTPIQTQAIPHALEGRDVLGLAQTGTGKTAAFGLPLIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
            L A     +P +  LAL +APTRELA Q+   L       G   + + +GG S++ +  
Sbjct: 62  ALTAAGTHAAP-NTVLALILAPTRELAAQIVDSLRAFAGNGGSPRIGLVVGGKSINAQAN 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D +  K L +   + +VLDEAD+MLDLGF   +  I    PK+
Sbjct: 121 ALRRGTDILVATPGRLIDLLDRKALTLGKARYLVLDEADQMLDLGFIHALRRIAPLLPKE 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   ++ +A  Y  D VRV ++   +    +D     VA   +   ++++L
Sbjct: 181 RQTMLFSATMPKQMSEIAGAYLTDPVRVQVSPPGKPADKVDQSVHFVAKDAKQALLIDLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H  + A+VF  T+    R  K L    F   ++ G  SQ +R+ AL   R+G+ RV +
Sbjct: 241 DAHRDERALVFARTKHGAERLMKQLDRAGFAASSIHGNKSQGQRNRALDGFREGKVRVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+P +  V + EL + PEN +HR GRT RAG  G +V    +        +
Sbjct: 301 ATDVAARGIDIPGVGYVYNYELPNVPENYVHRIGRTARAGADGRAVAFCGEEEMGELRDI 360

Query: 360 FREANVSVV 368
            +     + 
Sbjct: 361 EKVLGKPIA 369


>gi|302188635|ref|ZP_07265308.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. syringae
           642]
          Length = 445

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 KKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|1169228|sp|P46942|DB10_NICSY RecName: Full=ATP-dependent RNA helicase-like protein DB10
 gi|563986|dbj|BAA03763.1| RNA helicase like protein DB10 [Nicotiana sylvestris]
          Length = 607

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 108/365 (29%), Positives = 173/365 (47%), Gaps = 6/365 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   + + G+   T +Q       L+ +D++  A+TGSGKT+ + +  
Sbjct: 144 LTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPA 203

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R +P   P  L ++PTRELA Q+  E       + +      GG     + 
Sbjct: 204 FIHL--QQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKGPQL 261

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L  G  IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 262 RELSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPV 321

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    E   +  I     +V   ++   + 
Sbjct: 322 QRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVE 381

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR     + I+   +   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 382 QILRSKEPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAIHGDKSQGERDYVLSQFRAGRSP 441

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++         + A
Sbjct: 442 VLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHA 501

Query: 357 ERLFR 361
             L +
Sbjct: 502 LDLVK 506


>gi|238650986|ref|YP_002916842.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
 gi|238625084|gb|ACR47790.1| ATP-dependent RNA helicase RhlE [Rickettsia peacockii str. Rustic]
          Length = 410

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 125/409 (30%), Positives = 207/409 (50%), Gaps = 15/409 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F N+ + +   L        T +Q+  +   +   D+L S+QTGSGKT+A+ L L  
Sbjct: 1   MKNF-NLSEELIIVLETMNITEPTEIQKQSIPVAMAGSDILASSQTGSGKTLAYLLPLID 59

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + +         +   AL + PTRELA Q+   L  +     +  AV IGG  + ++   
Sbjct: 60  SFI--------KNKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGAPMPKQFMQ 111

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++GTPGR+ DH+    L I  +   VLDE D MLD+G ++ +E I    P+KR
Sbjct: 112 LKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMKEQLEEINKFLPEKR 171

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++LMFSAT+   I  +++ Y  + VR+ + + N+  ++I   ++ V+  ++ +A +    
Sbjct: 172 QVLMFSATMPKHIIAVSQKYLNNPVRITVGATNKAAAEIKQESMHVSDKEKFSA-LTKQL 230

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   + I+F  T+ S  +  K+L        A+ G+LSQ++R   +   R    R+ +A
Sbjct: 231 GNREGSVIIFVKTKRSADQLAKMLKYENHTAEAIHGDLSQRQRERVILSFRKSNHRIMVA 290

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVAARG+D+P  + VI+ +L   PE+ LHR GRTGRAG  G ++  I  +     R  +
Sbjct: 291 TDVAARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAID 350

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVD 405
           RL  +   S       S +  R+R   +R   D     +     K+  D
Sbjct: 351 RLVNK-GESTPRSEFRSDKNNRKRSFGKRAGGDGTKFHAFDSSRKRTCD 398


>gi|152993022|ref|YP_001358743.1| DEAD-box ATP dependent DNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
           NBC37-1]
          Length = 460

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 130/417 (31%), Positives = 207/417 (49%), Gaps = 10/417 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + + +   G+   + +Q+  +      KD++  A TG+GKT AFGL +       
Sbjct: 7   NFHRDLAKGVKIAGFREPSPIQKMAIPIIEGGKDLVGQAHTGTGKTAAFGLPMM------ 60

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D+ +      AL I PTRELA QV  EL  L    G+      GGV   R+   +  G 
Sbjct: 61  -DKLAKGEIERALVITPTRELATQVADELYHLGRFAGIRTLTVYGGVGYGRQIALIHKGV 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D  R   +++ + + VVLDEADEMLD+GF D+I+ I +  P+ R+ L+F
Sbjct: 120 QIVVATPGRLKDLYRKGKIDVLNPEIVVLDEADEMLDMGFLDEIKEIFEYIPQNRQTLLF 179

Query: 186 SATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  LA +       +++   E   ++ I+ R  ++  + RD AIV +L     
Sbjct: 180 SATMPEPIKELANHILYQPEFISVVGDEETTNNIIEQRYYVINENQRDEAIVKLLETEDT 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+FC  +  V R T+ L    F    L G+L QQ+R   ++  R G  ++ +ATDVA
Sbjct: 240 NKCIIFCRMKREVDRLTEYLQAQGFNASGLHGDLEQQDREVVIKAYRRGETKIMVATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  V +  +  +P++ +HR GRTGRAG+ G ++ ++     R  +R+ +E  
Sbjct: 300 ARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEEFRELQRIQKEVG 359

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             +        E + E   + + +     D     E K +   L   D E +    +
Sbjct: 360 ADMHLATLQGGEGLDESSLEYLAEQ--IRDMPVHKEAKRLIEYLGDIDKELLLEKLI 414


>gi|237836123|ref|XP_002367359.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|14595111|emb|CAC43441.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii]
 gi|211965023|gb|EEB00219.1| eukaryotic translation initiation factor 4A [Toxoplasma gondii
           ME49]
 gi|221484990|gb|EEE23280.1| conserved hypothetical protein [Toxoplasma gondii GT1]
 gi|221505957|gb|EEE31592.1| eukaryotic translation initiation factor 4A, putative [Toxoplasma
           gondii VEG]
          Length = 412

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 184/371 (49%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +A    +    
Sbjct: 46  LNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQLIDYN- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    L +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H
Sbjct: 105 -----INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +  + L +  +K  ++DEADEML  GF+  I  +    P   ++ +FS
Sbjct: 160 MVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  L   + +D  R+ + ++      I    V +     +   + ++       
Sbjct: 220 ATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETLTIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI++C+TR  V   T  ++E  F V ++ G++ Q+ R   ++  R G  RV I TD+ A
Sbjct: 280 QAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +  EN +HR GR+GR GRKG+++  +  +   + + + +  N 
Sbjct: 340 RGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKEIEKHYNT 399

Query: 366 SVVWEPAPSVE 376
            +   P    E
Sbjct: 400 QIEEMPMEVAE 410


>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
          Length = 527

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 210/484 (43%), Gaps = 45/484 (9%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P    + + +++ G+   T +Q   +   L  KD++  AQTG+GKT AF L +   
Sbjct: 33  FKDFPFDMKLQQVIADEGFSIPTPIQVRAIPIVLEGKDIIACAQTGTGKTAAFALPILHK 92

Query: 62  LLAE-NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           L+ +       +  P  L + PTRELA+QV           G   +A+  G     +   
Sbjct: 93  LVQDAQTEKQRSYHPKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMVN 152

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    +VV TPGRL D +   G+N+S +  ++LDEAD MLD+GF  D + I+ + PK+
Sbjct: 153 LRRRSPQVVVATPGRLLDILEQGGINLSSIHTLILDEADRMLDMGFIPDTKRIVKAIPKE 212

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSATIS  +  L+K      V +++A +      I+     V   ++   + ++L
Sbjct: 213 RQSLMFSATISSEVNALSKQIMNTPVHISVAPKRASAEGIEQLLYSVPGDNKRALLFHLL 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+   S+ +  L     +   +    SQ  R +  +  R G+ RV +
Sbjct: 273 ENDEMNRVIIFTRTKFGASKLSDSLIREGIRSKVIHSGKSQAARQSVWEHFRSGKLRVLV 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+  +  V++ +L    E  +HR GRTGRA + G+++     + +R    +
Sbjct: 333 ATDLASRGIDVDGISHVVNYDLPDCAETYIHRIGRTGRANKTGIALSFCSPDQRRLLTAI 392

Query: 360 FREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            R    ++ V +  P ++   + D Q                        ++   E +++
Sbjct: 393 ERHLGKTLPVCKDHPFMKPTGKADRQ------------------------SEESTEDVSS 428

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
                        E++         D  RD+ R F                 ++    Q 
Sbjct: 429 -------------EDMGREPRGRSFDEGRDNRRPFSGDSRRPSRRNERRPHRIN---NQG 472

Query: 479 AEAR 482
           +  R
Sbjct: 473 SSPR 476


>gi|261409742|ref|YP_003245983.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261286205|gb|ACX68176.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 538

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/350 (32%), Positives = 191/350 (54%), Gaps = 9/350 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G    T VQ+  +   L+ KDV+  A+TG+GKT+AF L +   +  +         
Sbjct: 27  LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHIDPKRA------Y 80

Query: 75  PLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P AL +APTRELA+Q+  E +        G+ +    GG  V ++ R L+ G  +++GTP
Sbjct: 81  PQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGTP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L +  +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+   
Sbjct: 141 GRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPAG 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFC 251
           +  LA NY    V + I   +    +   + V+      + +A+  ++  H    AI+FC
Sbjct: 201 VKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQDALRAMIEEHNPFLAIIFC 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +   + L  H +Q   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D+ 
Sbjct: 261 RTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLDVE 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +  V + ++  + E+ +HR GRTGRAG  GM++           +R+  
Sbjct: 321 GVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQRIEE 370


>gi|56090019|gb|AAV70960.1| Vasa [Carassius gibelio]
          Length = 701

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/362 (30%), Positives = 182/362 (50%), Gaps = 9/362 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           + + + +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+   
Sbjct: 273 ESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMADGVA 332

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +FS    P A+ +APTREL  Q+  E       T V   V  GG++     R++  G 
Sbjct: 333 ASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGC 392

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----ILDSSPKKR 180
           +I+ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+        + S   ++
Sbjct: 393 NILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSPGMPSKEDRQ 452

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            ++  +          A   + D + + +       SD++   + V    + + ++++LR
Sbjct: 453 TLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYSKRDQLLDLLR 512

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   R G+  V +A
Sbjct: 513 STGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDFRTGQCPVLVA 572

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           T VAARG+D+  ++ V++ +L S+ +  +HR GRTGR G  G +V    P++    A  L
Sbjct: 573 TSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFNPESDTPLARSL 632

Query: 360 FR 361
            +
Sbjct: 633 VK 634


>gi|221117600|ref|XP_002163251.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Hydra magnipapillata]
          Length = 790

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 182/369 (49%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               +   +    Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++A+ 
Sbjct: 283 FDDHLMGVIRSSNYSKPTPIQSQAVPVALSGRDIIGIARTGSGKTAAFVWPMLVHIMAQ- 341

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL  APTREL  Q+  E +       + V  C GG S   + + LQ GA 
Sbjct: 342 PVLKEGDGPIALICAPTRELCQQINSECKRFGKCYNLRVIACYGGGSKWEQTKGLQQGAE 401

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I+ K  N+  +  +V DEAD M D+GF   +  I ++    R+ L+FS
Sbjct: 402 IVVCTPGRLIDLIKAKATNLLRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQCLLFS 461

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT+   +  L ++   D +R+ +      + DI     ++    +    +  +I+ +   
Sbjct: 462 ATMKKKVEWLCRDILSDPIRIVVGELGEANEDIVQAVEVMKSPQQKWNWLLSHIVEFTSG 521

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +++       L E  +++  + G+  Q ER+N L+  +  +  + +ATDVA
Sbjct: 522 GSVLIFVTKKSNSEEVAANLKEQGYELGLIHGDFDQFERNNVLKQFKQKQFLILVATDVA 581

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE-- 362
           ARG+D+P ++ VI+ +++ +     HR GRTGRAG KG++  +I       A  L R   
Sbjct: 582 ARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGIAYTLITPQDTHFAADLVRNLE 641

Query: 363 -ANVSVVWE 370
            AN  V  E
Sbjct: 642 GANQRVPDE 650


>gi|195397525|ref|XP_002057379.1| GJ17053 [Drosophila virilis]
 gi|194147146|gb|EDW62865.1| GJ17053 [Drosophila virilis]
          Length = 1244

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 549 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLED 607

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 608 GDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 667

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 668 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 727

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+   K  V V +   +    D++   V+++   +   ++ +L  +    +I
Sbjct: 728 FPRQMEALARRILKKPVEVIVGGRSVVCKDVEQNVVILSDEAKFFKLLELLGVYQETGSI 787

Query: 249 V-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           + F   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 788 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 847

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +   I     R A  + R  ++S 
Sbjct: 848 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGSAYTFITPEQSRYAGDVIRALDLSG 907

Query: 368 VWEPA 372
              P 
Sbjct: 908 TPVPP 912


>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
 gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|16081434|ref|NP_393777.1| DEAD box protein [Thermoplasma acidophilum DSM 1728]
 gi|10639440|emb|CAC11442.1| probable DEAD box protein [Thermoplasma acidophilum]
          Length = 388

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 198/374 (52%), Gaps = 10/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  NI + +   L   G+V++T+VQE  + P L  +D+++ ++TGSGKT A+ + +
Sbjct: 21  MSKFEECNIKEDLKSDLKRMGFVDMTAVQERTIEPALAGRDLIIRSKTGSGKTAAYLVPI 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +       S    P AL + PTRELA+QV    E L   + +   V  GG S+ R+ 
Sbjct: 81  INNI-------SLGRKPSALIVLPTRELALQVHGVAEKLGHSSRIRSTVIYGGASMSRQI 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  I+VGTPGR+ D      LN+S +K  VLDEAD MLD+GF DDI+ ++    +
Sbjct: 134 ELLDRGTDIIVGTPGRILDLHERGFLNLSAVKYFVLDEADVMLDMGFIDDIKRMMSLLRE 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++  + SAT+   I  +A ++ +D   + + S+     +I +   +   + + + +   
Sbjct: 194 DKQTFILSATMPEEIIDMANDFMRDPETIIVGSDEVTVKEIYHYYAISKRNRKLHVLQTY 253

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +G +  I+F  T+         L    +  V ++G++SQ +R  A+  +   RA   
Sbjct: 254 LKTYGPQKTIIFSRTKVGTKMVCDFLLNMGYNAVMINGDMSQSQRERAMY-LFRNRADYL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGID+ D+  +I+ +L  +P+  +HR GRT R G +G +  ++ +  +    +
Sbjct: 313 VATNVAARGIDIRDVTDIINFDLPDDPKVYVHRVGRTARLGSEGRAFSIVEEGQRDAVYQ 372

Query: 359 LFREANVSVVWEPA 372
           +   A VS+     
Sbjct: 373 IEHMARVSLKQIKL 386


>gi|290543446|ref|NP_001166415.1| probable ATP-dependent RNA helicase DDX6 [Cavia porcellus]
 gi|81907597|sp|Q9WTM2|DDX6_CAVPO RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6; AltName: Full=Oncogene RCK
           homolog
 gi|4760645|dbj|BAA77391.1| DEAD box protein [Cavia porcellus]
          Length = 472

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 180/374 (48%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 87  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLER 146

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 147 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 200

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 201 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 260

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 261 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFP 319

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 320 RLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 379

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 380 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 439

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 440 EQLGTEI--KPIPS 451


>gi|115524965|ref|YP_781876.1| DEAD/DEAH box helicase domain-containing protein [Rhodopseudomonas
           palustris BisA53]
 gi|115518912|gb|ABJ06896.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
           BisA53]
          Length = 517

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 198/388 (51%), Gaps = 12/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY   T +Q+  +   +  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLAAVAASGYTTPTPIQDQAIPHVMARRDVLGIAQTGTGKTAAFVLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV  + +   A   + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDIKLTRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 125 VLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIVNILRYHG 243
           AT+   I  + + +  + V++ ++        +    V         R+     +     
Sbjct: 185 ATMPTEIRRITEAFLHNPVKIEVSKPASTAVTVTQSQVAAGREPHQKRETLRQLLREASD 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ AL+  R G   + +A+DV
Sbjct: 245 LQNAIIFCNRKREVALLAKSLLKHGFSVGALHGDMDQSARTAALEAFRKGELPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V + ++  +P++ +HR GRTGRAGR G +V ++     +    + +  
Sbjct: 305 AARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRAGTAVTLVAPPDGKSVAAIEKLI 364

Query: 364 NVSVVW------EPAPSVEAIRERDAQR 385
              +         P   VE  RE  A+R
Sbjct: 365 GQEIPRVQLGDAPPETEVEGEREAPARR 392


>gi|307132128|ref|YP_003884144.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306529657|gb|ADM99587.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 450

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 173/353 (49%), Gaps = 4/353 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  
Sbjct: 22  MGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRI 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA+QV  +   + A T + +A   GGV+             +VV T GRL  
Sbjct: 80  LILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQ 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAITT 195
           +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT         
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDF 199

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             +            S   +   + +      +  +   + ++L+      +IVF   R 
Sbjct: 200 AERLLNDPIEVEAEPSRRERKKILQWYYRADDVQHKTALLSHLLKQPDVTRSIVFVRKRE 259

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+  
Sbjct: 260 RVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDILDVSH 319

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           V + +L    +  LHR GRTGRAGRKG ++ ++  +     E++ R  N  + 
Sbjct: 320 VFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEKIGRYLNEPLK 372


>gi|282852614|ref|ZP_06261956.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
 gi|282556356|gb|EFB61976.1| ATP-dependent RNA helicase DeaD family protein [Lactobacillus
           gasseri 224-1]
          Length = 452

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 136/450 (30%), Positives = 217/450 (48%), Gaps = 13/450 (2%)

Query: 34  DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
            L  KDV+  AQTG+GKT AFGL +   L  ++D         A+ I PTRELA+Q   E
Sbjct: 2   VLEGKDVIGQAQTGTGKTAAFGLPILQNLDKQHDSI------QAIVIEPTRELAIQTQEE 55

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           L  L       V V  GG  + R+ R L+    I+VGTPGRL DH++   ++IS +K +V
Sbjct: 56  LFRLGRDEKARVQVVYGGADIRRQIRALKQTPAILVGTPGRLLDHLKRGTIDISKVKTIV 115

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEADEMLD+GF  DIE IL+ +  K + L+FSAT+   I  + + +  D   V I  + 
Sbjct: 116 LDEADEMLDMGFIQDIESILNYASSKHQTLLFSATMPKPILRIGEKFMHDPEIVKIKGKE 175

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              + ID   V    +++ + +  ++       A++F  T+  V   T+ L    +    
Sbjct: 176 LTANLIDQYFVRAKENEKFDILCRLIDVQNPDLAVIFGRTKRRVDELTRGLQARGYNAAG 235

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G+LSQ +R + L+  R G+  + +ATDVAARG+D+  +  V + ++  +P++ +HR G
Sbjct: 236 IHGDLSQAKRMSVLKRFRKGKLDILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIG 295

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP-LF 392
           RTGRAG+ GMSV  +  N       + +  +  ++    P+ E   +       +     
Sbjct: 296 RTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHKKMMLLKPPTDEEAFKGQLSAANKKVTEL 355

Query: 393 LDSIQGDEKKMVDVLLAKHDPEKIAAGFLR-IHRAGLCAPEEITPVSLVSGRDRFRDDS- 450
           LD            LL  +    + A  L+ + +       +ITP   +  + +  + + 
Sbjct: 356 LDGDLSKYTTEASQLLDDYSAVDLVAALLKNLSKDAESVKVKITPEKPLPFKSKHGNSNH 415

Query: 451 ---RAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
              R FK GG   + +          G K 
Sbjct: 416 HFKRNFKRGGDRNERYHRKPNARRG-GRKH 444


>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 669

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 174/384 (45%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + I   + + GY   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 212 ISTFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPV 271

Query: 59  ASTLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+    +   FS    P A+ I PTREL  Q+  E       T +   V  GG SV 
Sbjct: 272 LTKLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVG 331

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  ++  
Sbjct: 332 YQIRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSL 391

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSD 230
               ++    +   S       +    D +R +             SD+    + V   D
Sbjct: 392 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 451

Query: 231 RDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +    +           +VF  T+        VL +  F   ++ G+  QQ+R  AL+
Sbjct: 452 KRSKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALR 511

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +    
Sbjct: 512 DFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFF 571

Query: 349 PQ----NMQRRAERLFREANVSVV 368
                 N+ R   ++  EA   V 
Sbjct: 572 DNKKDANLARSLVKILSEAQQEVP 595


>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
 gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
          Length = 659

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 174/384 (45%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + I   + + GY   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 202 ISTFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPV 261

Query: 59  ASTLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+    +   FS    P A+ I PTREL  Q+  E       T +   V  GG SV 
Sbjct: 262 LTKLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVG 321

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  ++  
Sbjct: 322 YQIRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSL 381

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSD 230
               ++    +   S       +    D +R +             SD+    + V   D
Sbjct: 382 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 441

Query: 231 RDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +    +           +VF  T+        VL +  F   ++ G+  QQ+R  AL+
Sbjct: 442 KRSKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALR 501

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +    
Sbjct: 502 DFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFF 561

Query: 349 PQ----NMQRRAERLFREANVSVV 368
                 N+ R   ++  EA   V 
Sbjct: 562 DNKKDANLARSLVKILSEAQQEVP 585


>gi|326502382|dbj|BAJ95254.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 412

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 197/373 (52%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +   + + G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +    
Sbjct: 46  IREDLLRGIYDYGFEKPSAIQQRAVIPIITGRDVIAQAQSGTGKTSMISLSVCQVIE--- 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL ++PTRELA Q  R ++ + +   V V  C+GG S+  + R L++G H
Sbjct: 103 ---TNVHEVQALILSPTRELATQTERVMQAVGSFMSVSVHACVGGKSIGEDIRKLESGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+CD I+ + L    +K +VLDEADEML  GF+D I  +    P + ++++ S
Sbjct: 160 VVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPPELQVVLIS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D VR+ +  +      I    V +     + + + ++       
Sbjct: 220 ATLPHDILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 280 QAVIFCNTKRKVDWLTERMRTNNFTVSAMHGDMPQKERDAIMNEFRGGTTRVLITTDVWA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + ++  R    + +  + 
Sbjct: 340 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYST 399

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 400 QIDEMPMNVADLI 412


>gi|118574850|gb|ABL07003.1| DH [Medicago sativa]
          Length = 406

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 191/379 (50%), Gaps = 9/379 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   I   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +  
Sbjct: 34  SFEEMGIKDDLLRGIYNYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q  + +  +     +    CIGG SV  + R 
Sbjct: 94  VVD------TSVREVQALIVSPTRELASQTEKVILAIGDYINIQAHACIGGKSVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P   
Sbjct: 148 LEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 208 QVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMSEFRVGTTRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    +
Sbjct: 328 TTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|146306338|ref|YP_001186803.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574539|gb|ABP84071.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 441

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 180/371 (48%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A + P L  KD+ V AQTGSGKT AF L L + LL + 
Sbjct: 7   LHERLLKAVAELNFVEPTPVQAAAIPPALEGKDLRVIAQTGSGKTAAFVLPLLNRLLGDG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +      +  AL + PTRELA Q  +E+E     T +   +  GG     +   +     
Sbjct: 67  NSQQRV-SIRALILLPTRELAQQTLKEVERFAQFTFLKAGLVTGGEDFKVQ-AAMMRKID 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL +H     L +  ++ +V DEAD MLD+GF +D + + ++    + +L  +
Sbjct: 125 ILIGTPGRLIEHANAGNLPLGDVEVLVFDEADRMLDMGFAEDAQRLAEACGPHQTLLFSA 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
            T    +  +     K+   + + S ++                 ++  +  +L      
Sbjct: 185 TTGGNGLREMVAKVLKEPQHLMLNSVSQLNEGTRQQIITADHNHHKEQLVDWLLANETYD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +TR    R    L     +   L GE  Q++R  A++ +R G  +V +ATDVAA
Sbjct: 245 KAIVFTNTRVQADRLYGKLVAAGVKAFVLHGEKDQKDRKLAIERLRQGAVKVLVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          + R    
Sbjct: 305 RGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHTDWNLMSSIERYLKQ 364

Query: 366 SVVWEPAPSVE 376
                    ++
Sbjct: 365 RFERRTIKELK 375


>gi|308322209|gb|ADO28242.1| eukaryotic initiation factor 4a-iii [Ictalurus furcatus]
          Length = 406

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 34  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 94  CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 148 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 208 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 268 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 327

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 328 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 387

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 388 EQYYSTQIDEMPMNVADLI 406


>gi|289620618|emb|CBI52979.1| unnamed protein product [Sordaria macrospora]
          Length = 1190

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 209/452 (46%), Gaps = 15/452 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            + + I + +   GY   T +Q   L   +  +DV+  A+TGSGKT+AF L L    + + 
Sbjct: 562  LTRPILDTIESLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPLL-RHVKDQ 620

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            D  +     +AL + PTREL  Q+  +L+       + V    GG ++  +  +L+ GA 
Sbjct: 621  DPVTGDDGAIALIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAE 680

Query: 127  IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I+V TPGRL D +   G  +++LK    +VLDEAD M D+GF   +  I ++    R+ +
Sbjct: 681  IIVATPGRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI 740

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            +FSAT+   I +L K   +D V + +   +    +I     ++    + N ++ +L    
Sbjct: 741  LFSATMPRIIDSLTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELLGELY 800

Query: 244  AK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            A      +++F   +       + L    +  +++ G   Q++R++ +   + G   + I
Sbjct: 801  ADDDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILI 860

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT +AARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  I +  +  A  +
Sbjct: 861  ATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCASGI 920

Query: 360  FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             +    S    P   +  +R+   +++            D        L K D ++ AA 
Sbjct: 921  AKALEQSGQPVPD-RLNEMRKAWKEKVKAGKA------KDASGFGGKGLEKLDKDREAAR 973

Query: 420  FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
                        E+       +     +D ++
Sbjct: 974  MRERKTHKAEGEEDDVKEDAPAEDGEKKDKTK 1005


>gi|167622797|ref|YP_001673091.1| ATP-dependent RNA helicase SrmB [Shewanella halifaxensis HAW-EB4]
 gi|167352819|gb|ABZ75432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 411

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 178/370 (48%), Gaps = 6/370 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     
Sbjct: 6   FEDLQLDPRLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R+   +    L + PTRELA Q+ R    L    G+   +  GGV    +   L
Sbjct: 66  LLDFPRRYGGRA--RVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEAL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q    I+V TPGRL +++     N   ++ +++DEAD MLD+GF   +E I   S  +++
Sbjct: 124 QKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVETIAIESVGRKQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +      +          A   R      ++ +      + +   +  +L
Sbjct: 184 TMLFSATLEGSDVGRFSHELLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCALL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  IVF  TR +V+    +L +       + G++ Q+ R  AL     G   + +
Sbjct: 244 KQEEVQRTIVFVKTREAVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILL 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   ++
Sbjct: 304 ATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI 363

Query: 360 FREANVSVVW 369
            R     +  
Sbjct: 364 ERYIEQPLKR 373


>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
          Length = 444

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 182/374 (48%), Gaps = 8/374 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I  AL++ G+ + T +Q+  +   +  +D+L  AQTG+GKT  F L +  
Sbjct: 2   TFEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    +         AL ++PTRELA Q+ +  +           + +GGV   R+ R+
Sbjct: 62  KI---AEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERN 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IVV TPGRL DH+R   L +++   V++DEAD MLD+GF  DI  I+   PK R
Sbjct: 119 LKRNWDIVVATPGRLLDHVRRNNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDN--AIVN 237
           + L+FSAT  P I  LA  +Q DAV V +  E +    I      +   S +      V 
Sbjct: 179 QSLLFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVL 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     I+F  T+ S    +  L +  +   AL G+ SQ  R+  L   R G  +V
Sbjct: 239 DEGKSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGRAGR G ++       +    
Sbjct: 299 LVATDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVR 358

Query: 358 RLFREANVSVVWEP 371
            +   A   +   P
Sbjct: 359 SIETMAGKPIPHSP 372


>gi|110740927|dbj|BAE98559.1| eukaryotic protein synthesis initiation factor 4A [Arabidopsis
           thaliana]
          Length = 412

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ   H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQASVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|294142598|ref|YP_003558576.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
 gi|293329067|dbj|BAJ03798.1| ATP-dependent RNA helicase RhlB [Shewanella violacea DSS12]
          Length = 438

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+E G+   T +Q A L   L++KD+   AQTG+GKT+AF +A    LL  
Sbjct: 15  SLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLTT 74

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PIPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYEVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P    R  
Sbjct: 135 IDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L+    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+S+    +        +   
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGISISFACEEYALNLPAIEEY 374

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD 389
              S+          +   D++ +L+D
Sbjct: 375 ILHSIP---------VSNYDSEGLLED 392


>gi|332994630|gb|AEF04685.1| ATP-dependent RNA helicase RhlB [Alteromonas sp. SN2]
          Length = 435

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 200/392 (51%), Gaps = 15/392 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+   + N T +Q   L P L   D+   AQTG+GKT+AF +A    
Sbjct: 10  FSDLPINSKVVDALTAANFNNCTPIQALSLPPLLEGLDIAGQAQTGTGKTIAFLVATFHY 69

Query: 62  LLA--ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           LL+  +ND  S +  P A+ +APTRELAVQ+  + + L   TG+ + +  GG     +R 
Sbjct: 70  LLSKADNDENSNSKGPRAIIMAPTRELAVQIFNDAKLLSEHTGLSLGLIYGGEGYQSQRE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++GT GR+ D+ +     +++++  VLDEAD M DLGF  DI F+    P  
Sbjct: 130 TLEEGVDIIIGTTGRILDYYKQNVFTLNNIQVAVLDEADRMFDLGFIKDIRFLFRRLPPA 189

Query: 180 RRM--LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                ++FSAT+S  +  LA  +  +   V +A E    + +       +  D+   +++
Sbjct: 190 TERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSDDDKMLLLLS 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AIVF +T+ S  R T  L     +V  LSG++ Q++R   L+    G+  +
Sbjct: 250 LFEEEWPDKAIVFANTKYSCERVTDWLTADGHRVGLLSGDVPQKKRLGILEDFTKGKLDI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ +  +  V + +L  + E+ +HR GRTGRAG+ G+++    +       
Sbjct: 310 LVATDVAARGLHIDSVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFACEKYAMNLP 369

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
            + +    ++          + + DA  +L D
Sbjct: 370 DIEKYIQHAIP---------VTDYDASALLDD 392


>gi|297571784|ref|YP_003697558.1| DEAD/DEAH box helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932131|gb|ADH92939.1| DEAD/DEAH box helicase domain protein [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 520

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 137/491 (27%), Positives = 225/491 (45%), Gaps = 37/491 (7%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   I +AL+ +G  +   +Q   L   L+  D++  A+TG+GKT+ FG+ + 
Sbjct: 37  KTFADYGVSAPIVDALAAKGISHPFPIQALTLPVALKGSDIIGQAKTGTGKTLGFGIPMI 96

Query: 60  STLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +  +    D  +   AP  LA+ PTRELA QV ++L        + +    GG +  
Sbjct: 97  ERCIGPSEPGFDALAHPGAPQGLAVVPTRELAKQVAQDLRDAAKNRSIRIVEVYGGRAYE 156

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + +DL+ GA I+VGTPGRL D ++ + LN+  ++AVVLDEADEMLDLGF +D+E IL +
Sbjct: 157 PQIKDLEKGAEIIVGTPGRLIDLMKHRTLNLGAVRAVVLDEADEMLDLGFLEDVEKILSA 216

Query: 176 SPKKRRMLMFSATISPA---ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +P  R  ++FSAT+      +     ++           E+     +          ++ 
Sbjct: 217 TPPTRHTMLFSATMPGPVIAMARRYMSHATHIRAQAHDDESTTVQSVRQVVYRAHALNKI 276

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + +R  + LA   F   AL G+L Q  R  AL+  R 
Sbjct: 277 EVLARILQARGRGLTIIFTRTKRTAARVAEDLAARGFATGALHGDLGQGAREQALRAFRH 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ ++  VI+ +   + +  +HR GRTGRAG  G ++  +    
Sbjct: 337 GKIDVLVATDVAARGIDVDNVTHVINYQAPEDEKTYVHRIGRTGRAGHSGTAITFVD--- 393

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                           WE  P    I +  +   L  P  +++    +    D+ +    
Sbjct: 394 ----------------WEDTPKWAVINKLLS---LGMPEPVETYHTSDHLYTDLDI---- 430

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           P  +     +  R       E       +GR   R  +R    G  S+ +  GS     +
Sbjct: 431 PTDVTGRLPKAQRTREGLNAEKLEDLGETGRSAGRGRNRNQNRGR-SKRDRNGSQPHQ-N 488

Query: 473 VGSKQKAEARW 483
            G  ++   + 
Sbjct: 489 KGRNERRSPKE 499


>gi|326482079|gb|EGE06089.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 680

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 200 VSTFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 259

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S         +P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 260 LSQAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 319

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 320 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 379

Query: 166 RDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++          + LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 380 EPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 439

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HGA   ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 440 KVEYVEDNDKRSVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 499

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 500 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 559

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 560 GISTAFFNRGNRGVVRDLIELLKEAHQEVP 589


>gi|302501664|ref|XP_003012824.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
 gi|291176384|gb|EFE32184.1| hypothetical protein ARB_01075 [Arthroderma benhamiae CBS 112371]
          Length = 677

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 197 VSTFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 256

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S         +P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 257 LSQAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 316

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 317 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 376

Query: 166 RDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++          + LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 377 EPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 436

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HGA   ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 437 KVEYVEDNDKRSVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 496

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 497 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 556

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 557 GISTAFFNRGNRGVVRDLIELLKEAHQEVP 586


>gi|82196760|sp|Q5U526|I4A3A_XENLA RecName: Full=Eukaryotic initiation factor 4A-III-A;
           Short=eIF-4A-III-A; Short=eIF4A-III-A; AltName:
           Full=ATP-dependent RNA helicase DDX48-A; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3-A; AltName:
           Full=DEAD box protein 48-A; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3 A
 gi|54311504|gb|AAH84859.1| Unknown (protein for MGC:85498) [Xenopus laevis]
          Length = 415

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 43  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQ 102

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 103 CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRK 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 157 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 216

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 217 QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 276

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 277 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 336

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR G KG+++  +  +  R    +
Sbjct: 337 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKNDDIRILRDI 396

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 397 EQYYSTQIDEMPMNVADLI 415


>gi|25809056|gb|AAN74636.1| DEAD box RNA helicase [Pisum sativum]
          Length = 413

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGHDVIQQAQSGTGKTATFCSGVLQQLDYN- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----VTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L+  ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLHPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +   + + +  NV
Sbjct: 341 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVNKEDEAMLQDIQKFYNV 400

Query: 366 SVVWEPAPSVE 376
            V   P+   E
Sbjct: 401 LVEELPSNVAE 411


>gi|327304303|ref|XP_003236843.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
 gi|326459841|gb|EGD85294.1| ATP-dependent RNA helicase DED1 [Trichophyton rubrum CBS 118892]
          Length = 678

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 198 VSTFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 257

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S         +P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 258 LSQAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 317

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 318 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 377

Query: 166 RDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++          + LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 378 EPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 437

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HGA   ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 438 KVEYVEDNDKRSVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 497

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 498 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 557

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 558 GISTAFFNRGNRGVVRDLIELLKEAHQEVP 587


>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
 gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
          Length = 780

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 223/459 (48%), Gaps = 29/459 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + + +A+ + G+   T +Q   +   L  KD+L SA TGSGKT AF L +  
Sbjct: 183 TFEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILE 242

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R S   A   L + PTRELA+Q    LE L   + +   + +GG+S   +  +
Sbjct: 243 RLLF---RDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVE 299

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +V+ TPGRL DH+          L+ ++LDEAD +LD+GF+D+I  I+DS P  
Sbjct: 300 LRKRPDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTS 359

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----I 235
           R+ ++FSAT++  + TLAK   +  +RV + +  +  S +D   V +      +     +
Sbjct: 360 RQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILM 419

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
               R       I+FC ++  V R   +      +   L G LSQ++R ++LQ  RDG+ 
Sbjct: 420 SLCTRVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKV 479

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +A+DVA+RG+D+  ++ VI+  + +     +HR GRT RAG +G S   I +N ++ 
Sbjct: 480 NYLLASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKI 539

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-----FLDSIQGDEKKMVDVLLAK 410
            + +  +A                +  ++ + QD +      ++ +  D +++V   L +
Sbjct: 540 LKEIVTKAR--------------NKAKSRSVSQDNVNFWRNRIEELTEDIREIVRDELKE 585

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            D  K      +  +      EE T    V  + +  ++
Sbjct: 586 ADLRKAEKALDKAEKVISKPFEENTETERVWYKTKSEEE 624


>gi|73620772|sp|Q91VN6|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
           Full=DEAD box protein 41
 gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 622

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|332375408|gb|AEE62845.1| unknown [Dendroctonus ponderosae]
          Length = 469

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 209/412 (50%), Gaps = 12/412 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ +A  +  +   + +Q   +   L+ KD++  A+TGSGKT AF L +   LL    R
Sbjct: 48  DVLCKACEQLKWKTPSKIQRESIPVALQGKDIIGLAETGSGKTAAFALPILQALLENPQR 107

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L    HI+
Sbjct: 108 H------FALILTPTRELAFQISEQFEALGSGIGVKSIVIVGGLDMTSQALMLAKKPHII 161

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P++RR  +FSA
Sbjct: 162 IATPGRLVDHLSNTKGFNLRALKFLVMDEADRILNMDFEAEVDKILKVIPRERRTFLFSA 221

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D VRV ++++ +    +    V +    +D  +V+IL  +   + 
Sbjct: 222 TMTKKVNKLQRACLQDPVRVEVSTKYQTVEKLLQYYVFIPAKFKDVYLVHILNENAGNSF 281

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFCST  +  R   +L    F  V L G++SQ +R  AL   +     + I+TDVA+RG
Sbjct: 282 MVFCSTCNNTIRTALLLRNLGFTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVASRG 341

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++VI+ ++  + ++ +HR GRT RAGR G ++  + Q      +R+       +
Sbjct: 342 LDIPHVDIVINFDIPMHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRIEHLIGKQL 401

Query: 368 VWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                   E +    R  ++QRI +  L  D  +    K         D E+
Sbjct: 402 PLYKTEEEEVMGLQERVEESQRIAKTELR-DLTEKKGNKKRKGGGDDDDTEE 452


>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
           112818]
 gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
          Length = 474

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 128/393 (32%), Positives = 205/393 (52%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY N T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KTFKDLGIIDSLCDACTSLGYKNPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQITEAFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +  I+F  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRL 435


>gi|326538779|gb|ADZ86994.1| DEAD/DEAH box helicase domain protein [Brucella melitensis M5-90]
          Length = 455

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 17  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 77  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 135

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 136 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 195

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 196 PKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 255

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 256 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 315

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 316 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 375

Query: 369 WEPAP 373
            + AP
Sbjct: 376 IKDAP 380


>gi|284047862|ref|YP_003398201.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
 gi|283952083|gb|ADB46886.1| DEAD/DEAH box helicase domain protein [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 200/384 (52%), Gaps = 12/384 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + E L   G    T VQE  +   L  +DV+  AQTG GKT++F + L   +  + 
Sbjct: 10  VDETMVEKLHRTGKDIPTPVQERAIPALLNGRDVIARAQTGVGKTLSFVIPLFDKVDPQK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +         AL ++PTRELA Q   E+  L   TG+      GG     E+R + + A 
Sbjct: 70  EFV------QALILSPTRELAQQTAGEIRKLEGDTGIRTLTVSGGRDFEEEKRKIGHRAQ 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGRL DH+R    ++  +K +VLDE DEML  GF +DIE +L   P+  + +M S
Sbjct: 124 VLVGTPGRLLDHLRKGNTSLGGVKYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMMCS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +    + + ++IA +    S I    + V+   + +A+ +++R +    
Sbjct: 184 ATLDEEVRKLGRQLTTNPLVIDIAPKESTASTIHQICIKVSEDHKADALASLIRRYNPFL 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC ++      +  L    F V  L G++SQ +R   ++  R  + ++ +A+D+AAR
Sbjct: 244 MLVFCCSKERAIELSDWLYGEGFNVDVLHGDMSQTKRRQVMENFRKAKLQILVASDIAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V++ ++  +P+  +HR GRTGRAG +G ++     +  R  + L ++ +++
Sbjct: 304 GLDVEGITQVVNYDIPHDPDWYVHRIGRTGRAGSEGTAITFYTADETRWLQNLEKKLDIT 363

Query: 367 VVWEPAP------SVEAIRERDAQ 384
           +  +         +V+ +R +  +
Sbjct: 364 LERQNLAGETVRRTVKPVRPKKKR 387


>gi|265991134|ref|ZP_06103691.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265999460|ref|ZP_05466486.2| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|263001918|gb|EEZ14493.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094098|gb|EEZ18020.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409073|gb|ADZ66138.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis M28]
          Length = 462

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|260564054|ref|ZP_05834540.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
 gi|260154070|gb|EEW89162.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
          Length = 510

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|17987217|ref|NP_539851.1| ATP-dependent RNA helicase RHLE [Brucella melitensis bv. 1 str.
           16M]
 gi|225852555|ref|YP_002732788.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|256044711|ref|ZP_05447615.1| DEAD/DEAH box helicase domain protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|17982889|gb|AAL52115.1| ATP-dependent RNA helicase rhle [Brucella melitensis bv. 1 str.
           16M]
 gi|225640920|gb|ACO00834.1| DEAD/DEAH box helicase domain protein [Brucella melitensis ATCC
           23457]
          Length = 535

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGATASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|327262891|ref|XP_003216257.1| PREDICTED: probable ATP-dependent RNA helicase DDX4-like [Anolis
           carolinensis]
          Length = 1021

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/358 (29%), Positives = 175/358 (48%), Gaps = 10/358 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+ Q++ E ++  GY  LT VQ+  +   L  +D++  AQTGSGKT AF + + +
Sbjct: 215 TFDEANLCQILMENIARAGYFKLTPVQKHSIPIVLAGRDLMACAQTGSGKTAAFLIPILA 274

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            +L +      F     P  + +APTREL  Q+  E       T V   V  GG+ +   
Sbjct: 275 HMLRDGITATHFKEQQEPECIIVAPTRELINQIFLESRKFSYGTCVRPVVIYGGIQMGHT 334

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----I 172
              +  G +I+  TPGRL D I    + ++ LK +VLDEAD MLD+GF  D++       
Sbjct: 335 IHQIMQGCNILCATPGRLLDIINRGKIGLTKLKYLVLDEADRMLDMGFGPDMKKLISSPG 394

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           + S  +++ ++  +           +  + D + V +       SD++   + V   D+ 
Sbjct: 395 MPSKDQRQTLMFSATFPEEIQRLAGEFLKVDYLFVVVGQVGGACSDVEQTILQVNQYDKR 454

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ IL   G +  +VF  T+         L +      ++ G+  Q+ER  ALQ  R 
Sbjct: 455 EKLLEILNAIGKERTMVFVETKKKADFIATFLCQEYIPTTSIHGDREQREREEALQCFRS 514

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+  V +AT VAARG+D+ +++ VI+ +L S  +  +HR GRTGR G  G ++     
Sbjct: 515 GKCPVLVATSVAARGLDIENVQHVINFDLPSAIDEYVHRIGRTGRCGNTGKAISFFDP 572


>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
 gi|143462228|sp|A1CR32|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
          Length = 473

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 125/426 (29%), Positives = 209/426 (49%), Gaps = 18/426 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA +  GY   T +Q   +   L+++D++  A+TGSGKT AF L + 
Sbjct: 53  KSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGKTAAFALPIL 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L +   V  AV +GG+ +  +  
Sbjct: 113 QALMDKPQSF------FGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDMVSQSI 166

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 167 ALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPR 226

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q           +    +D  +V 
Sbjct: 227 ERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFIPHKHKDIYLVY 286

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++AI+F  T     R + +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 287 LLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDI 346

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L ++ +  +HR GRT RAG+ G+++  + Q       
Sbjct: 347 LVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWL 406

Query: 358 RLFREANVSVVWEPAPS------VEAIRERDAQRILQDPLFLDSIQGDEKKM--VDVLLA 409
           R+       +              E + E   Q I++   F +      KK         
Sbjct: 407 RIEGALGKKLDEYDLEKDEVMVLAERVGEAQRQAIMEMKNFDEKKGTRAKKFGKGKRSRD 466

Query: 410 KHDPEK 415
           + D E+
Sbjct: 467 EMDQEE 472


>gi|52425891|ref|YP_089028.1| ATP-dependent RNA helicase RhlB [Mannheimia succiniciproducens
           MBEL55E]
 gi|61214859|sp|Q65RG7|RHLB_MANSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|52307943|gb|AAU38443.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 417

 Score =  190 bits (482), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 195/381 (51%), Gaps = 7/381 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + EAL   G+   T +Q   L   L  KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    +    + P AL +APTRELAVQ+  + E +   TG+  A+  GG    ++ + +
Sbjct: 71  LLEHPVK---TNHPRALIMAPTRELAVQIAHDAERMVKTTGLKTALAYGGDGYDKQLKAI 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++GT GR+ D+++   + +SH++ VVLDEAD M DLGF  DI +++   P  ++
Sbjct: 128 EAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFDLGFIKDIRYLMRKCPSPKQ 187

Query: 182 MLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L   FSAT+S  +  LA     D   V +    +    I       +  D+   ++ +L
Sbjct: 188 RLTLLFSATLSYKVRELAFEDMNDPEYVEVEPLQKTGHRIKEELFYPSNEDKMPLLITLL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+    +    LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 248 EEEWPERCIIFANTKHQCEKIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGALDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 308 ATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 367

Query: 360 FREANVSVVWEPAPSVEAIRE 380
                  +      S   IR+
Sbjct: 368 EEYIGHHIAVSQYDSDSLIRD 388


>gi|195399942|ref|XP_002058578.1| GJ14499 [Drosophila virilis]
 gi|194142138|gb|EDW58546.1| GJ14499 [Drosophila virilis]
          Length = 733

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY + T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 289 LPDYVVKEIRRQGYKSPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIVHINNQQ 348

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 349 P-LQRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 407

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 408 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 467

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 468 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 527

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 528 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 587

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 588 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 647

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 648 DVLREANQEI 657


>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|143359979|sp|A1D373|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 1193

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 195/423 (46%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY N TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 569 LDVIHRLGYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIRDQRP-LEN 627

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 628 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 687

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 688 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSAT 747

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +  ++    +I     +     +          +     +
Sbjct: 748 FPRNMEALARKSLTKPIEIVVGGKSVVAPEITQIVEVRNEDTKFVRLLEILGNLYSDDAN 807

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + ++  + G   + IAT 
Sbjct: 808 EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPILIATS 867

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 868 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 927

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 928 LRQSGQKVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 976

Query: 418 AGF 420
           A  
Sbjct: 977 ARM 979


>gi|260947802|ref|XP_002618198.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
 gi|238848070|gb|EEQ37534.1| hypothetical protein CLUG_01657 [Clavispora lusitaniae ATCC 42720]
          Length = 692

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 18/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +  ++ E ++   +   T VQ+  +     ++D++  AQTGSGKT  F   +
Sbjct: 223 ITSFEAPPLDPLLVENITLSRFTKPTPVQKYSVPIVCNKRDLMACAQTGSGKTGGFLFPV 282

Query: 59  ASTLLAENDRFSP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S          P            P  L +APTREL  Q+  E +    ++ V  AV  
Sbjct: 283 LSECFMSGPAPQPEPTGAFSFNKVYPTILIMAPTRELVSQIFEEAKKYCYRSWVRPAVAY 342

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GGV + ++ R LQ G  ++V  PGRL D +    +++ ++K +VLDEAD MLD+GF   I
Sbjct: 343 GGVDIGQQIRTLQRGCDLLVAAPGRLTDLLERGRVSLCNVKYLVLDEADRMLDMGFEPQI 402

Query: 170 EF----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                       + R+ LMFSAT    I  LA+++ KD V +++       ++I  + +L
Sbjct: 403 RHIVQECDMPDVQDRQTLMFSATFPRNIQMLARDFLKDYVFLSVGRVGSTSANITQKVLL 462

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V   ++ + I+++L        IVF  T+         L +  F   A+ G  +Q ER  
Sbjct: 463 VEDDEKRSVILDLLSAADNGLTIVFTETKRMADYLADFLYDQGFPATAIHGNRTQYEREK 522

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL   ++G A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++ 
Sbjct: 523 ALAAFKNGTAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNTGIAT 582

Query: 346 FVIPQNMQRRAER---LFREANVSVV 368
               +N +   +    L  EAN  + 
Sbjct: 583 SFFNRNNKNIVKDMIALLSEANQEIP 608


>gi|90408655|ref|ZP_01216807.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90310231|gb|EAS38364.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 418

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 194/370 (52%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  + +  AL+E G+   T +Q   L   L  KD+   AQTG+GKT+AF  A+ + 
Sbjct: 11  FIDLPLQESLLSALTELGFEYCTPIQAISLPITLLGKDIAGQAQTGTGKTLAFLPAVFNH 70

Query: 62  LLAENDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL   +  +     P A+ +APTRELA+Q+ ++       T + + +  GG  V  +R  
Sbjct: 71  LLINKEPENRSKDQPRAIILAPTRELAIQIHKDAMVFAKHTNLRLGLAYGGEKVEIQRNK 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++GT GR+ D ++   +N++ +++VVLDEAD M DLGF  DI ++    P+  
Sbjct: 131 LEKGVDILIGTTGRIIDFVKQGTINLNSIQSVVLDEADRMFDLGFIKDIRYLFRRMPESN 190

Query: 181 R--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
               ++FSAT+S  +  LA  +      + I  E     +I       + +++ + ++ +
Sbjct: 191 LRLNMLFSATLSHKVQELAFEHMNSPEHIQIEPERMTSENISEELFYPSNAEKMHLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ +  +    LA    +   L+G++ Q++R   L    DG   V 
Sbjct: 251 MEEEWPEKAIVFANTKHTCEKVWGYLAGDGLRAGLLTGDVPQKKREKILSQFTDGDIDVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+KG ++ +  +        
Sbjct: 311 VATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGQKGQAITLACEKYAFNLPE 370

Query: 359 LFREANVSVV 368
           +      S+ 
Sbjct: 371 IEAFIKHSIP 380


>gi|225579790|gb|ACN94070.1| unknown [Drosophila melanogaster]
          Length = 1198

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            E L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 522 MEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSMED 580

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 581 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 640

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 641 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 700

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    +++   V++    +   ++ +   Y  A + 
Sbjct: 701 FPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGIYQEAGSI 760

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 761 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 820

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 821 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSG 880

Query: 368 VWEPA 372
              PA
Sbjct: 881 TLIPA 885


>gi|251764757|sp|B5FZY7|IF4A3_TAEGU RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|197128100|gb|ACH44598.1| putative DEAD box polypeptide 48 [Taeniopygia guttata]
          Length = 410

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 38  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 98  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 152 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 212 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 272 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 331

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 332 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 391

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 392 EQYYSTQIDEMPMNVADLI 410


>gi|50291147|ref|XP_448006.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661189|sp|Q6FP38|DBP1_CANGA RecName: Full=ATP-dependent RNA helicase DBP1
 gi|49527317|emb|CAG60957.1| unnamed protein product [Candida glabrata]
          Length = 604

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 195/379 (51%), Gaps = 16/379 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   + S L    
Sbjct: 145 LDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNG 204

Query: 64  ------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                      +     P AL +APTRELA+Q+  E +    ++ V   V  GG  + ++
Sbjct: 205 PAPLPEHTRHSYMRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPIGQQ 264

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            RD+  G +++V TPGRL D +    +++ ++K +VLDEAD MLD+GF   I        
Sbjct: 265 MRDMDRGCNLLVATPGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCD 324

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S   R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   D+++
Sbjct: 325 MPSVNDRQTLMFSATFPREIQHLARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNS 384

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+++IL        +VF  T+    + T  L    F+  A+ G+ +Q ER  AL   R+G
Sbjct: 385 ALLDILINEIDGLTLVFVETKRMADQLTDFLIVQNFKATAIHGDRTQAERERALHAFRNG 444

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++      N  
Sbjct: 445 IANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSM 504

Query: 354 RRAERLFR---EANVSVVW 369
             A+ L     EAN  V  
Sbjct: 505 NIAKELMDLLTEANQEVPQ 523


>gi|320163628|gb|EFW40527.1| cytoplasmic DExD/H-box RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 602

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 176/376 (46%), Gaps = 11/376 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E+GY N + +QE  +   L  + VL  A+ G+GKT A+ + L 
Sbjct: 220 NTFEDYHLKRELLMGIFEKGYENPSPIQEESIPVALAGRHVLARAKNGTGKTAAYLIPLL 279

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              A+ + PTRELA+Q  +  + L    GV V V  GG S+  +  
Sbjct: 280 EMIDTGKPHI------QAVVLVPTRELALQTSQLCKELGKHMGVKVMVTTGGTSLKDDII 333

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ   H++V TPGR  D  +    N++  + VV DEAD++L   F    E +L   P  
Sbjct: 334 RLQETVHVLVATPGRAVDLAQKGVANVTQARVVVFDEADKLLSPEFLPVAEQMLALLPPT 393

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+++++SAT   ++   +  Y K+A  +N+  E             V    + + +  + 
Sbjct: 394 RQVMLYSATFPVSVKDFSDRYLKNAYEINLMEELTLKGI-TQYYAFVEERQKVHCLNTLF 452

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    + + E  +    +  ++ Q  R+      R G  R  +
Sbjct: 453 SKLQINQSIIFCNSVQRVELLARKITELGYSCFYIHAKMLQSHRNRVFHDFRRGACRNLV 512

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    R+
Sbjct: 513 CSDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITYDDRMNLLRI 572

Query: 360 FREANVSVVWEPAPSV 375
            +E    +  +P P+V
Sbjct: 573 EQELGAEI--KPIPAV 586


>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDTGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|67970455|dbj|BAE01570.1| unnamed protein product [Macaca fascicularis]
          Length = 437

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 188/381 (49%), Gaps = 17/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +  
Sbjct: 1   MK----FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIM 56

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGV 112
             L +  R  FS    P  L I P+RELA Q    LE+               A+CIGG+
Sbjct: 57  FCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGM 116

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I
Sbjct: 117 SVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 176

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   AK+     V +N+        D+      V    + 
Sbjct: 177 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM 236

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+
Sbjct: 237 VYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 295

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---- 348
           G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I    
Sbjct: 296 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC 355

Query: 349 PQNMQRRAERLFREANVSVVW 369
            +++    + L  EA   V  
Sbjct: 356 DESVLMDLKALLLEARQKVPP 376


>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
          Length = 392

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/376 (28%), Positives = 190/376 (50%), Gaps = 9/376 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +   +   GY   +++Q+  + P +  +DV+  AQ+G+GKT  F +++   
Sbjct: 21  FEKLGLKSELLRGIYSFGYEKPSAIQQRAIKPSVEGRDVIAQAQSGTGKTATFAISILQR 80

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +         ++   AL + PTRELA Q+   ++ + +   V    CIGG  +  +   L
Sbjct: 81  IDVS------SNTCQALVLVPTRELARQIQTVVQRIGSYLNVRCHTCIGGTRMSEDVACL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G H+VVGTPGR+ D +    L  S++K  VLDEAD+ML  GF   I+ I    P+  +
Sbjct: 135 QQGQHVVVGTPGRVIDMMNRSILATSNIKIFVLDEADQMLGRGFEPQIKEIYKYLPESAQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILR 240
           +++ SAT+   + T+A+   +D V++ I  E      I      +     +   ++++ +
Sbjct: 195 IMLLSATMPKQMLTIARGIMQDPVQILIKKEELTLDGIKQFYINVSKEEYKLETLMDLYK 254

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F ++    S  ++ LA   FQV  ++ ++ Q++R   ++  R GR+R+ ++
Sbjct: 255 VMNLSQVVIFVNSVRKASYLSEELANRNFQVSCINSDMEQEKRDRVMEEYRSGRSRILLS 314

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARGID+  + LV++ +L  + E  +HR  R GR GRKG ++  I    +     L 
Sbjct: 315 TDVLARGIDVQQVSLVVNYDLPGDRETYIHRICRGGRFGRKGTAINFITDTEKEALRDLQ 374

Query: 361 REANVSVVWEPAPSVE 376
              N  ++  P   V+
Sbjct: 375 TYYNTEILEMPDDIVD 390


>gi|195614644|gb|ACG29152.1| ATP-dependent RNA helicase DDX41 [Zea mays]
          Length = 618

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 187/375 (49%), Gaps = 13/375 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L ERG V  T +Q   L   L  +D++  A T SGKT+ F L L    L E 
Sbjct: 180 LPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTRSGKTLVFVLPLIMVALQEE 239

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRER 118
                 P   P  + I P+RELA Q    +E             +   +CIGGV +  + 
Sbjct: 240 SLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIPLKEAGYPEIRHLLCIGGVDMRTQL 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVV TPGRL D +  K +N+ + + + LDEAD ++DLGF DDI+ + D    
Sbjct: 300 DVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIKEVFDHFKD 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   AKN     V VN+      + D+      V    R   ++  
Sbjct: 360 QRQTLLFSATMPQKIQNFAKNALVKPVTVNVGRAGAANLDVIQEVEYVKEDARIIYLLEC 419

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++FC  +A V    + L     + VA+ G   Q+ER NA+   + GR  V 
Sbjct: 420 LQKTPPP-VLIFCENKADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIDSFKTGRKDVL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---- 354
           +ATDVA++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +N       
Sbjct: 479 VATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLL 538

Query: 355 RAERLFREANVSVVW 369
             + L +EA   +  
Sbjct: 539 DLKHLLKEAKQRIPP 553


>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
          Length = 379

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 193/378 (51%), Gaps = 9/378 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++  + + I + +   G+   +++Q+  + P +  KDV+V AQ+G+GKT  + +++   
Sbjct: 8   FDHMGLKKNILKGIYSCGFEKPSTIQQKAIFPCISGKDVIVQAQSGTGKTATYAISVLQQ 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   N          AL + PTRELA+Q  R L+ +             G +  +E ++ 
Sbjct: 68  IDTSNSNI------QALILTPTRELALQAQRVLQTIGNYLYNFKCQVCIGGTSIKESQET 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              A +++GTPGR+ D +  K ++   +K VV+DEADEML   F D I+ I +      +
Sbjct: 122 LKKAQVLIGTPGRMIDLLTRKSIDTKAIKIVVIDEADEMLIDNFLDKIQDIFEFFESHVQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILR 240
           +++ SAT+   +   ++ + +D V++ + +       I      +     +   + ++  
Sbjct: 182 VILLSATVPSRVINTSQVFMRDPVKILVKNAELTLEGIRQYYINVKKNDFKAETLFDLYD 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +      ++FC+TR  V    + L    F   ++ G++SQQER   ++  RDG+ R+ ++
Sbjct: 242 HLSLTQTLIFCNTRRQVDVLMECLTNRNFTASSIHGDMSQQERDFIMKEFRDGKTRILLS 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T++ ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  I ++   +   L 
Sbjct: 302 TNLLARGIDVQQISLVINYDLPHNRENYIHRIGRSGRFGRKGIAINFITEDELPKLAELE 361

Query: 361 REANVSVVWEPAPSVEAI 378
              N  +   P   V+ I
Sbjct: 362 TFYNTKIDEMPENIVDLI 379


>gi|302662748|ref|XP_003023025.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
 gi|291187001|gb|EFE42407.1| hypothetical protein TRV_02846 [Trichophyton verrucosum HKI 0517]
          Length = 677

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 197 VSTFTNPPLDDHLISNIKLASYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 256

Query: 59  ASTLLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S         +P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 257 LSQAFQNGPSPAPTQQGGQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 316

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 317 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 376

Query: 166 RDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I++          + LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 377 EPQIRRIVEGEDMPPVAGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 436

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HGA   ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 437 KVEYVEDNDKRSVLLDILHTHGAGLTLIFVETKRMADSLSEFLINQHFPATAIHGDRTQR 496

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 497 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 556

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 557 GISTAFFNRGNRGVVRDLIELLKEAHQEVP 586


>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
 gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
          Length = 1206

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 195/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 582 LDVIHKLGYDQPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 640

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 641 MEGPVGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 700

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    R+ ++FSAT
Sbjct: 701 PGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIIGNIRPSRQSVLFSAT 760

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +   + +          +     +
Sbjct: 761 FPRNMEALARKTLTKPVEIIVGGRSVVAPEITQIVEVRPENTKFVRLLELLGNLYSDDAN 820

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   V IAT 
Sbjct: 821 EDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGIFPVLIATS 880

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 881 VAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKA 940

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S   +P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 941 LKQS--GQPVPDA-------VQKMVD--AFLEKVKSGKEKASASGFGGKGLERLDQERDA 989

Query: 418 A 418
           A
Sbjct: 990 A 990


>gi|113460320|ref|YP_718381.1| ATP-dependent RNA helicase RhlB [Haemophilus somnus 129PT]
 gi|122945181|sp|Q0I1X0|RHLB_HAES1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|112822363|gb|ABI24452.1| ATP-dependent RNA helicase, DEAD box family [Haemophilus somnus
           129PT]
          Length = 419

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 199/385 (51%), Gaps = 12/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A+ E+G+   T +Q   L   L+ +D+   AQTG+GKT+AF  A    LL +N
Sbjct: 16  LHRSVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  + +  P AL +APTREL VQ+  +  +L   TG+   +  GG    ++ + +  G  
Sbjct: 76  N-INSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDQGID 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           I++GT GR+ D+++   + + +++ VVLDEAD M DLGF  DI +       P++R  ++
Sbjct: 135 ILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQRLTML 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +  D   V I    +    I       +  D+   ++ +L     
Sbjct: 195 FSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIREELFYPSNQDKMALLMTLLEEEWP 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T+         L+    +V  L+G++ Q++R + L+   DG   + +ATDVA
Sbjct: 255 ERCIIFSNTKHRCEEIWGYLSADGHRVGLLTGDVMQKKRLSLLKQFTDGTLDILVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 315 ARGLHIPDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGISISFACEEYAINLPAIEEYIG 374

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD 389
            S+          + + DA+ +++D
Sbjct: 375 HSIP---------VSQYDAKALIED 390


>gi|325120651|emb|CBZ56206.1| DEAD-box ATP-dependent RNA helicase 34, related [Neospora caninum
           Liverpool]
          Length = 411

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 184/371 (49%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F +A    +    
Sbjct: 45  LNESLLRGIYSYGFEKPSAIQQRGIKPILDRHDTIGQAQSGTGKTATFAIAALQLIDYN- 103

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    L +APTRELA Q+ + +  L     V    C+GG  V  +   L+ G H
Sbjct: 104 -----INNCQVLILAPTRELAQQIQKVVLALGDYLQVRCHACVGGTVVRDDIAKLKAGVH 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +  + L +  +K  ++DEADEML  GF+  I  +    P   ++ +FS
Sbjct: 159 MVVGTPGRVHDMMEKRHLRVDDMKLFIMDEADEMLSRGFKSQIYDVFKKLPPDVQVALFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  L   + +D  R+ + ++      I    V +     +   + ++       
Sbjct: 219 ATMPQDILELTTKFMRDPKRILVKNDELTLEGIRQFYVAVEKEDWKLETLCDLYETLTIT 278

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI++C+TR  V   T  ++E  F V ++ G++ Q+ R   ++  R G  RV I TD+ A
Sbjct: 279 QAIIYCNTRRKVDFLTSKMSERDFTVSSMHGDMDQKSREMIMREFRSGSTRVLITTDLLA 338

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L +  EN +HR GR+GR GRKG+++  +  +   + + + +  N 
Sbjct: 339 RGIDVQQVSLVINYDLPATKENYIHRIGRSGRFGRKGVAINFVTSSDVEQLKEIEKHYNT 398

Query: 366 SVVWEPAPSVE 376
            +   P    E
Sbjct: 399 QIEEMPMEVAE 409


>gi|323141176|ref|ZP_08076077.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414319|gb|EFY05137.1| putative DEAD-box ATP-dependent RNA helicase CshA
           [Phascolarctobacterium sp. YIT 12067]
          Length = 418

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/353 (27%), Positives = 178/353 (50%), Gaps = 6/353 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G      VQE  +      +DV+  AQTG+GKT+AF + LA  +       +  
Sbjct: 16  EQLQKMGIKKPMPVQEQAIPALFAGRDVIARAQTGTGKTLAFLVPLAEKID------TAK 69

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           S   AL I PTRELA Q+  E++ +  ++ + V    GG     ++  L+  +H+++GTP
Sbjct: 70  SYVQALVITPTRELAQQIATEMKKILGESDIKVLAVTGGRDFETQKYKLEGRSHVLIGTP 129

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DHIR    ++  ++ +VLDE DEML  GF D+   ++  +  + + ++ SAT+S  
Sbjct: 130 GRLLDHIRKGNTDLGGVRYLVLDEVDEMLQQGFMDEALELIAMTAPEHQTMLCSATLSEE 189

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  L +   K+   ++I  +      I    +      ++ A+  ++        IVFC 
Sbjct: 190 VRKLGRKLTKNCALIDINPDQATVEKIKQVCLKTTDEYKNKAVAALIDRLNPYLMIVFCM 249

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           ++         L    + V  L GE+S  +R   ++  RD + ++ +A+D+AARG+D+  
Sbjct: 250 SKERTKELGDWLGMQGYNVDVLHGEMSPAKRKTVMKAFRDAKIQILVASDLAARGLDVEG 309

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           +  V++ ++  + +  +HR GRTGRAG +G ++ +   +  +    +  +  +
Sbjct: 310 VTHVVNYDIPHDVDWYVHRIGRTGRAGNEGEAITLYTADEVKWLRNIETKLGI 362


>gi|156085513|ref|XP_001610166.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
 gi|154797418|gb|EDO06598.1| ATP-dependent RNA helicase, putative [Babesia bovis]
          Length = 433

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 170/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + L   
Sbjct: 62  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLEK 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N+          L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 122 LNTSNNHI------QGLILLPTRELALQTSAVVKELGKYLDVQCMVSTGGTSLRNDIVRL 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++ GTPGR+ D       ++S    V+LDEAD+ML   F+  IE +L   P +++
Sbjct: 176 YKPVHVLCGTPGRILDLTNKNVADLSKCHVVILDEADKMLSAEFQPIIEALLRFLPTEKQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M+++SAT   ++    ++Y  +A  +N+  E             V    + + +  +   
Sbjct: 236 MILYSATFPMSVQKFKESYLPNAHEINLMDELTLKGI-TQYYAYVEERQKIHCLSTLFSR 294

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++ + V    K + E  F    +   + Q  R+      R+G  R  +++
Sbjct: 295 LQINQAIIFCNSVSRVELLAKKITELGFSCFYIHARMLQAHRNRVFHDFRNGACRCLVSS 354

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID   + +VI+ +        LHR GR+GR G  G+++ ++    +    R+  
Sbjct: 355 DLFTRGIDFRFVNVVINFDFPKTSATYLHRIGRSGRFGHLGLAINLVTLADKEALFRIEE 414

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 415 ELGTEIKATPA 425


>gi|254449290|ref|ZP_05062736.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
 gi|198261099|gb|EDY85398.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium HTCC5015]
          Length = 433

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 194/365 (53%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +++   G+   T +Q   L   L+ +D+   AQTG+GK+ AF +A    LL + 
Sbjct: 16  LSDALLDSIQATGFEYCTPIQAQTLPLVLKGQDIAGQAQTGTGKSAAFLIATFERLLRQP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA+Q+ ++ E L   T + +A+  GG +  ++R+ ++ GA
Sbjct: 76  APAERKPQQVRALILAPTRELAIQIHKDAEQLGQATDLKLALAYGGANYEQQRKTIEAGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            +++GTPGR+ D+ + K  ++ + + VVLDEAD M DLGF  D+ +++   P+ ++ L  
Sbjct: 136 DVLIGTPGRIIDYWKQKVFDLKYCQVVVLDEADRMFDLGFISDVRYLMRRCPEPKQRLSL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA  +  +  ++ +A+E      ++      A  ++   ++ + +++ 
Sbjct: 196 LFSATLSLRVQELAYEHMDNPTKIEVAAEQVTADRVEQYLYHPANDEKIPLLLGLFKHYQ 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F +T+ +       L  +  +   LSG++ Q++R+  ++  + G     +ATDV
Sbjct: 256 PQRSIIFVNTKRNADTVWGYLKGNGIEAALLSGDVPQKKRTRMVEQFKAGELTALVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+ +P +  V + +L  + E+ +HR GRT RAG  G ++    ++       +    
Sbjct: 316 ASRGLHVPGVSHVFNYDLPQSAEDYVHRIGRTARAGESGYALSFACEDTAFNLMDIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 EGSIP 380


>gi|329923450|ref|ZP_08278932.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
 gi|328941342|gb|EGG37636.1| DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus sp. HGF5]
          Length = 538

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 115/350 (32%), Positives = 191/350 (54%), Gaps = 9/350 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L E+G    T VQ+  +   L+ KDV+  A+TG+GKT+AF L +   +  +         
Sbjct: 27  LKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFMLPILQHIDPKRA------Y 80

Query: 75  PLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           P AL IAPTRELA+Q+  E +        G+ +    GG  V ++ R L+ G  +++GTP
Sbjct: 81  PQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLRKLEGGRQLIIGTP 140

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   L +  +K +VLDEAD+ML +GF D++E ++ + P +R+ ++FSAT+   
Sbjct: 141 GRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYRRQTMLFSATMPAG 200

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKNAIVFC 251
           +  LA NY    V + I   +    +   + V+      + +A+  ++  H    AI+FC
Sbjct: 201 VKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQDALRAMIEEHNPFLAIIFC 260

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+   +   + L  H +Q   L G+LSQ +R   ++  R+ + ++ +ATDVAARG+D+ 
Sbjct: 261 RTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLLVATDVAARGLDVE 320

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            +  V + ++  + E+ +HR GRTGRAG  GM++           +R+  
Sbjct: 321 GVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQRIEE 370


>gi|224094640|ref|XP_002195464.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Taeniopygia
           guttata]
          Length = 451

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 118/415 (28%), Positives = 209/415 (50%), Gaps = 14/415 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ +A  + G+   T +Q   +   L+ +DV+  A+TGSGKT AF L +  
Sbjct: 25  SFKDLGVTDVLCKACDQLGWKVPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFALPILQ 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
            LL    R        AL + PTRELA Q+  + E L +  G    AV +GG+    +  
Sbjct: 85  ALLETPQR------LFALVLTPTRELAFQISEQFEALGSSIGVQTSAVIVGGIDTMSQSL 138

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+++ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 139 ALAKKPHVIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPR 198

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   K+ V+  ++S+ +    +    + +    +D+ +V I
Sbjct: 199 DRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYI 258

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L    F  + L G++SQ +R  +L   +     + 
Sbjct: 259 LNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSIL 318

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R
Sbjct: 319 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQR 378

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           +       +   P    E +    R  +AQR+ +  L     +   +   D    
Sbjct: 379 IEHLIGKKLPAFPMQEEEVMMLTERVAEAQRLARMELREQGEKKRSRNDDDDTEE 433


>gi|322799058|gb|EFZ20513.1| hypothetical protein SINV_09810 [Solenopsis invicta]
          Length = 710

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 175/386 (45%), Gaps = 18/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   +  ++ E + + GY   T VQ+  +   +  +DV+  AQTGSGKT AF L +
Sbjct: 269 IQSFDQSGLRSILLENIKKSGYTKPTPVQKYAIPIIMSGRDVMACAQTGSGKTAAFVLPI 328

Query: 59  ASTLLAEND---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +LL       +   +  P A+ I+PTREL  Q+  + +     + + V V  GG S+ 
Sbjct: 329 LHSLLENQRDLVKTGSSCEPHAIIISPTRELTSQIYTQFKKFSLNSIIRVEVIYGGTSIS 388

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   + NG H++V TPGRL D I    + +S L+  VLDEAD MLD+GF  DIE ILD 
Sbjct: 389 HQTNKVFNGCHVLVATPGRLLDFIGRGKVVLSSLRFFVLDEADRMLDMGFLPDIEKILDH 448

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-------SENRQHSDIDYRAVLVAL 228
                         S       +      +R  +                I Y+A     
Sbjct: 449 ETMVAAEERQMLMFSATFPNDIQELAGRFLRNYLFLAVGIVGGACADVEQIFYQASGQPD 508

Query: 229 SDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +    +   +      +  +VF + +         L+E+ +   ++ G+  Q+ER  A
Sbjct: 509 KRKLLKELIEKQNQLGSIEGTLVFVAQKRHTDFIAAFLSENNYPTTSIHGDRLQREREEA 568

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +  
Sbjct: 569 LSDFKKGKMSILVATAVAARGLDIKNVSHVINFDLPQTIDEYVHRIGRTGRVGNRGKATS 628

Query: 347 VIPQN----MQRRAERLFREANVSVV 368
               N    +     ++ ++A   + 
Sbjct: 629 FFDPNSDTALTGDLIKILKQAGQPIP 654


>gi|309810396|ref|ZP_07704230.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
 gi|308435636|gb|EFP59434.1| DEAD-box ATP-dependent RNA helicase CshA [Dermacoccus sp. Ellin185]
          Length = 537

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 196/381 (51%), Gaps = 11/381 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +  I   I  AL E+G V+   +Q   L   L   D++  A+TG+GKT+ FG+ L 
Sbjct: 32  QTFADFGIHPDIVAALEEKGIVHPFPIQAMTLPVALSGHDIIGQARTGTGKTLGFGVPLL 91

Query: 60  STLLAENDR-----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           S + A  +       +P   P A+ + PTRELAVQV  +LE    K G+ +A   GG + 
Sbjct: 92  SRVTAPGETSKAAVPAPEGKPQAMVVVPTRELAVQVASDLEAAAKKRGIRIAQIYGGRAF 151

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G  ++VGTPGR+ D      L+++++  +VLDEADEMLDLGF  D+E IL 
Sbjct: 152 EPQVERLEKGVEVIVGTPGRIIDLATRGHLDLAYVGCLVLDEADEMLDLGFLPDVEKILA 211

Query: 175 SSPKKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +P  R+ ++FSAT+  A+                  + ASE    S+I+         D
Sbjct: 212 MTPGGRQTMLFSATMPGAVVTLARRYMTQPTHIRAMQDDASEAETASNIEQFVYRAHAMD 271

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL+       I+F  T+ + ++ +  L    F    L G+L Q  R  AL+  
Sbjct: 272 KVEMLARILQAKDRGLTIIFSRTKRTAAKVSDELISRGFAAAPLHGDLGQGAREQALRAF 331

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G++V ++  
Sbjct: 332 RSGKVDVLVATDVAARGIDVEDVTHVINYQCPEDEKTYVHRIGRTGRAGKTGIAVTLVDW 391

Query: 351 NMQRRAERLFREANVSVVWEP 371
           +   R   + +  ++ +    
Sbjct: 392 DDLHRWALINKALDLGIPEPE 412


>gi|1170506|sp|P41379|IF4A2_NICPL RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2
 gi|19697|emb|CAA43513.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 413

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 189/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H
Sbjct: 106 -----LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|114564377|ref|YP_751891.1| ATP-dependent RNA helicase DbpA [Shewanella frigidimarina NCIMB
           400]
 gi|114335670|gb|ABI73052.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 467

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 128/400 (32%), Positives = 212/400 (53%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L   G+ ++T +Q   L P L  +DV+  A TGSGKT AFGL L + L  + 
Sbjct: 18  LKPELLENLQTMGFESMTQIQAESLPPILAGEDVIGQAMTGSGKTAAFGLGLLNKLDVKR 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         + + PTRELA QV +++  L      V V    GGV +  +   L++GA
Sbjct: 78  FRI------QTMVLCPTRELADQVAKDIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S++  ++LDEAD ML++GF+  I+ I+ ++P++R+ L+F
Sbjct: 132 HIIVGTPGRIVDHLDRNRLDLSNMNMLILDEADRMLEMGFQQHIDQIIAAAPRERQTLLF 191

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A       V V + +++   +   +   +     R  A+  +L     +
Sbjct: 192 SATFPDQIQAIADQILYKPVMVKVEAKHDNLTIDQHFYRIEDNQGRLEALRLLLLDKQPE 251

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L E  F V+AL G+L Q++R   L    +  AR+ +ATDVAA
Sbjct: 252 SAVVFCNTKRETQQVADSLHEFGFSVLALHGDLEQRDRDQMLLQFANRSARILVATDVAA 311

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V +  ++ + E  +HR GRTGRAG  G +     +    +   +    N 
Sbjct: 312 RGLDIDELDAVFNYHIAYDTEVHIHRIGRTGRAGSSGAAYTFFGEEDGYKMAMIEEAMNK 371

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            VV EP P + A+ +    + L   +    I+  +K+ + 
Sbjct: 372 DVVSEPLPPMSALNK----QPLAAEMITIQIEAGKKQKIR 407



 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 23/65 (35%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +  G KQK     ++  L   +G++   IG I+V     +  V ++        
Sbjct: 392 EMITIQIEAGKKQKIRPGDIVGALTGGNGLDFNDIGKIKVTDFRAYFAVKSNVSKQAMNI 451

Query: 525 VKLDK 529
           +   K
Sbjct: 452 ISKGK 456


>gi|318054604|ref|NP_001187599.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
 gi|308323464|gb|ADO28868.1| eukaryotic initiation factor 4a-iii [Ictalurus punctatus]
          Length = 389

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV   +Q+G+GKT  F +++  
Sbjct: 17  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVSAQSQSGTGKTATFCVSVLQ 76

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELA Q+ + L  L     V    CIGG +V  + R 
Sbjct: 77  CLDIQ------VRETQALILAPTRELAGQIQKVLLALGDFMNVQCHACIGGTNVGEDIRK 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 131 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 190

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 191 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 251 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV A G+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 311 STDVWAGGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 370

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 371 EQYYSTQIDEMPMNVADLI 389


>gi|254482117|ref|ZP_05095359.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037807|gb|EEB78472.1| DbpA RNA binding domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 459

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 139/400 (34%), Positives = 211/400 (52%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+   + L   GY ++T +Q A L    + KD++  A+TGSGKT AF L L   L   +
Sbjct: 11  LPKDQLDNLISLGYASMTGIQAASLPLAFKGKDLIAQAKTGSGKTAAFSLPLLDKLNPRD 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV  E+  L      +  V   GG S+  +   L++GA
Sbjct: 71  ------FGTQALVLCPTRELATQVSGEIRRLARYRQNIKVVTLCGGQSIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R K LN++ +  +VLDEAD ML++GF +DI  I++ +P  R+ L+F
Sbjct: 125 HIVVGTPGRISDHLRKKTLNLTRVDTLVLDEADRMLEMGFVEDISSIIEQTPAARQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L+  +QK   R+           ID +  +   S R + +V +L +   +
Sbjct: 185 SATYPDDIEALSARFQKQPERI-SVETMHNDQQIDQQFFVCQKSARLDGLVTLLNHFAPQ 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VFC+T+  V   T  L E   + +AL G++ Q++R   L   R     V +ATDVAA
Sbjct: 244 TAVVFCNTKQLVRDVTAHLDESGIRALALHGDMEQRDRDQVLIQFRQQSCSVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL +V++ EL    E  +HR GRTGRAG+ G+++ +   + Q + E++ +    
Sbjct: 304 RGLDIDDLPVVVNFELPRETEVYVHRVGRTGRAGKAGLALSLFADSEQYKLEKIRQLLQQ 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
               +P  S+        +R+   P     I G  K  V 
Sbjct: 364 EPETKPIDSISV----RGERMPPPPYATLCIAGGRKHKVR 399



 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
            G R      +   ++ G K K     ++  L   +GI   ++G I V     +V V   
Sbjct: 376 RGERMPPPPYATLCIAGGRKHKVRPGDILGALTGEAGIAGSTVGKINVMDFAAYVAVETS 435

Query: 517 GVD----LLRRTVKLDKGIQLKYL 536
             D     L       +  +++ L
Sbjct: 436 VADKALGRLLNGKIKGRKFKVRRL 459


>gi|156555544|ref|XP_001603956.1| PREDICTED: similar to vasa-like protein [Nasonia vitripennis]
          Length = 732

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 187/387 (48%), Gaps = 19/387 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  N+  ++   + + GY   T VQ+  +   L  +D++  AQTGSGKT AF + +
Sbjct: 301 ISSFDEANLRVLLNTNIKKSGYTKPTPVQKYGIPILLSGRDLMACAQTGSGKTAAFLIPI 360

Query: 59  ASTLLAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             TLLA++   S  S+     P AL I+PTREL +Q+  E       + +   +  GG S
Sbjct: 361 IHTLLAKDRDLSDMSSANQVEPRALIISPTRELTIQIFDEARKFSKDSVLKCHIIYGGTS 420

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + + +  G  I+V TPGRL D +    +    ++ VVLDEAD MLD+GF  D+E +L
Sbjct: 421 TSHQMKQIFQGVDILVATPGRLLDLVGKGKITFDAIEFVVLDEADRMLDMGFLPDVEKVL 480

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                K        MFSAT    I  LA  +  + V V +       +DI+     V  S
Sbjct: 481 RHDTMKPPGERQTLMFSATFPQEIQQLAAKFLNNYVFVTVGIVGSACTDIEQSFFEVKKS 540

Query: 230 DRDNAIVNILRYHGAKNAIV----FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           D+   +  +L     +N +     F S + +      +L+E  F   ++ G+  Q+ER  
Sbjct: 541 DKRTKLKELLNEEIEQNMLNGILVFVSEKKTADFIAALLSEDNFPTTSIHGDRLQREREE 600

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL   + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G KG + 
Sbjct: 601 ALYDFKTGKMAILVATAVAARGLDIKNVRHVINYDLPKEIDEYIHRIGRTGRVGNKGKAT 660

Query: 346 FV----IPQNMQRRAERLFREANVSVV 368
                   + +Q    R+  +A   V 
Sbjct: 661 SFFDPRYDEKLQGDLVRVLTQAGQEVP 687


>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
           [Macaca mulatta]
          Length = 622

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G    +ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDHEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEARQKVPP 561


>gi|301384847|ref|ZP_07233265.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059212|ref|ZP_07250753.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           K40]
 gi|302130851|ref|ZP_07256841.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331017330|gb|EGH97386.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 445

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|241205862|ref|YP_002976958.1| DEAD/DEAH box helicase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859752|gb|ACS57419.1| DEAD/DEAH box helicase domain protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 580

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 198/371 (53%), Gaps = 4/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE++   + I   L + G    T +QE  +   L  +D++  AQTG+GKT AFGL L
Sbjct: 22  LTNFESLGVSKPIIATLFQLGIETPTPIQEHSIPLLLEGRDLIGLAQTGTGKTAAFGLPL 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LLA+  R         L +APTREL  Q+   L+    K+ + + V +GGVS+++++
Sbjct: 82  IEKLLADERRPD-NRTTRTLILAPTRELVNQIAESLKKFIRKSSLRINVVVGGVSINKQQ 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+V TPGRL D I  + + ++ ++ +VLDEAD+MLDLGF  D+  I    PK
Sbjct: 141 LQLEKGTDILVATPGRLLDLINRRAITLTAVRYLVLDEADQMLDLGFVHDLRKIAKMVPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVN 237
           KR+ ++FSAT+  AI  LA  Y  D V+V +    +    ++     VA  + +   +  
Sbjct: 201 KRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYVHFVAGKNDKTELLRK 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L  +    A+VF  T+    +  K L    + V ++ G  SQ +R  AL+  RDG  + 
Sbjct: 261 SLTENPDGRAMVFLRTKHGAEKLMKHLENIGYSVASIHGNKSQGQRERALKAFRDGSIKT 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+P +  V + +L   P+  +HR GRT RAGR G+++     +  +   
Sbjct: 321 LIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDEAKLLR 380

Query: 358 RLFREANVSVV 368
            + R   + + 
Sbjct: 381 DIERLMGIDIT 391


>gi|116668333|pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
           A Resolution
          Length = 374

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 2   TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQV + L  L     V    CIGG +V  + R 
Sbjct: 62  CLDIQ------VRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRK 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 116 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 176 QVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 236 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG++V  +  +  R    +
Sbjct: 296 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDI 355

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 356 EQYYSTQIDEMPMNVADLI 374


>gi|28868793|ref|NP_791412.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969602|ref|ZP_03397738.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
 gi|28852032|gb|AAO55107.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925698|gb|EEB59257.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tomato
           T1]
          Length = 453

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 15  LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 72  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 132 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 191

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 192 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 252 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 312 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 371

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 372 QSFERRVIKEVK 383


>gi|71736956|ref|YP_273717.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|289647906|ref|ZP_06479249.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298488177|ref|ZP_07006214.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557509|gb|AAZ36720.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157456|gb|EFH98539.1| ATP-dependent RNA helicase SrmB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869381|gb|EGH04090.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330988677|gb|EGH86780.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010277|gb|EGH90333.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 445

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|66047019|ref|YP_236860.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257726|gb|AAY38822.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971079|gb|EGH71145.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 445

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 409

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 198/371 (53%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +
Sbjct: 7   SLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPVLQQLLLD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N          AL + PTRELAVQV +        T + + +  GGVS+  ++ + + G 
Sbjct: 67  NQSQDAPKDIRALVLVPTRELAVQVQQSFGKYAKGTDIRIGIAYGGVSIEAQQAEFKAGI 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   LN+ HL  +V DEAD MLD+GF D+I+ +L   P +R+ L+F
Sbjct: 127 DVLIATPGRLLDHLRQGALNLKHLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I   +KN  ++   + +A  N   + ++ R   +    +   + +++R    +
Sbjct: 187 SATLDDSIFGFSKNLLREPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAA
Sbjct: 247 QVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    + 
Sbjct: 307 RGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQEDALLLEEVEALLDK 366

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 367 RLPQQWYPGFE 377


>gi|289617759|emb|CBI61482.1| unnamed protein product [Sordaria macrospora]
          Length = 648

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 193/386 (50%), Gaps = 20/386 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 220 TFTNPPLDNHLISNIALARYNVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 279

Query: 61  TLLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
                     PASA           P +L +APTREL  Q+  E      ++ V   V  
Sbjct: 280 QSFHTGPSPIPASAAGAYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVY 339

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I
Sbjct: 340 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 399

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I          +R+ LMFSAT    I  LA+++ KD + +++        +I  +   
Sbjct: 400 RRIVEGEDMPKVDQRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEY 459

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V   D+ + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  
Sbjct: 460 VEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERER 519

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+M R+GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 520 ALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 579

Query: 346 FVIPQNMQ---RRAERLFREANVSVV 368
               +  +   R    L +EAN  V 
Sbjct: 580 AFFNRGNRGVVRELLELLKEANQEVP 605


>gi|198427069|ref|XP_002129152.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           [Ciona intestinalis]
          Length = 452

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 212/456 (46%), Gaps = 29/456 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + L   G+   T +Q   + P L+ KD    ++TGSGKT AF L +   L  + 
Sbjct: 12  LNEWIIQHLGNLGFNKPTPIQYNCIPPILQGKDCFGCSKTGSGKTAAFALPVLQKLSEDP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   +     +  +V +GG+ + ++  +LQ   H
Sbjct: 72  ------YGIFCLVLTPTRELAYQISEQFTLIGKPINIRTSVIVGGMDIIQQAYELQKKPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +R    N+  L     D   + LD  F +D+  I  S PK+R+ L+FS
Sbjct: 126 IVIATPGRLADLLRSNENNVKFLVLDEADRLLDKLDGDFTNDLNLIFSSLPKERQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  + +   K        ++     ++D R +L+    RD  +V I +    K 
Sbjct: 186 ATLTDTLNEVKELSTKSPFFWQSDNKVSTVDNLDQRYILLPEHIRDGYLVYICKDLLEKQ 245

Query: 247 ----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T  +      +L +  FQ V L   + Q+ER  AL   +    R+ +ATD
Sbjct: 246 PTRSIMIFTKTCKNCQVLGMLLQKAGFQCVVLHSLMKQRERLTALSRFKSSNTRLLVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+P +++VI+  +    +N +HR GRT RAGR G+S+ ++ Q    R + +   
Sbjct: 306 VAARGLDIPVVQVVINHNVPGLAKNYIHRVGRTARAGRSGISITLVTQFDIHRVQSIEEH 365

Query: 363 ANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            N  +        E ++        +R+ + +L++  F +  + ++ K   ++L   DP 
Sbjct: 366 INTKLKEYEVDEREVLKILTKVNVMKRETEWVLEEQKFGEKKKTNKDK--ALILQGKDP- 422

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
                   I  A     E+   +     +++ R ++
Sbjct: 423 --------ITEAKKRKREKFYRIKEERKQNKKRKET 450


>gi|319425659|gb|ADV53733.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 481

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 186/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE         P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAEILVNDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APVHQTMLFSATYSDAVKQLAQKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  + G+ R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 TEIEALIEQKLPVSVQPGYEE 379


>gi|110289358|gb|ABG66172.1| ATP-dependent RNA helicase ste13, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 362

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 8/363 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     +  E       +
Sbjct: 2   GIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEK------N 55

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A   + + PTRELA+Q  +  + L     + V V  GG S+  +   L    H++VGTPG
Sbjct: 56  AIQVVILVPTRELALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D  R     +     +V+DEAD++L   F+  IE ++   P  R++LMFSAT    +
Sbjct: 116 RILDLTRKGICVLKDCSMLVMDEADKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               + Y      +N+  E             V    + + +  +        +I+FC++
Sbjct: 176 KDFKEKYLPRPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +    +  ++ Q  R+      R+G  R  + TD+  RGID+  +
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ +     E  LHR GR+GR G  G++V +I    +    R+ +E    +   P P
Sbjct: 295 NVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKTIP-P 353

Query: 374 SVE 376
            ++
Sbjct: 354 QID 356


>gi|73620773|sp|Q4R3Q1|IF4A3_MACFA RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|67971846|dbj|BAE02265.1| unnamed protein product [Macaca fascicularis]
          Length = 411

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 198/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +AP RELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|119384480|ref|YP_915536.1| DEAD/DEAH box helicase domain-containing protein [Paracoccus
           denitrificans PD1222]
 gi|119374247|gb|ABL69840.1| DEAD/DEAH box helicase domain protein [Paracoccus denitrificans
           PD1222]
          Length = 479

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 4/371 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L   G    + +QE  +   +  +D+L  AQTG+GKT AFGL + + LL    +  P +
Sbjct: 81  NLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAAFGLPMLTRLLNIGRKPEPRT 140

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL +APTRELA Q+   ++     T +     +GG S++ + + L+ G  +++ TPG
Sbjct: 141 -CRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASINVQVQRLERGVDVLIATPG 199

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D I    +++S  + +VLDEAD+MLD+GF   +  I    P++R+ L+FSAT+   +
Sbjct: 200 RLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAKMLPRERQTLLFSATMPKLM 259

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +Y  D +RV +    +    ID     V   D+   +   L  H  + AIVF  T
Sbjct: 260 EELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATLLAEYLSKHVDELAIVFGRT 319

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +    +  K+L +  F+V A+ G  SQ +R  AL   R G  +V +ATDVAARG+D+P +
Sbjct: 320 KHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGETKVLVATDVAARGLDIPQV 379

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--EANVSVVWEP 371
             V + +L + PEN +HR GRT RAGR G ++             + +  +A ++VV   
Sbjct: 380 AHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIGELRAIEKAMKAKIAVVGGE 439

Query: 372 AP-SVEAIRER 381
            P     IRER
Sbjct: 440 EPFEAAKIRER 450


>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
 gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
          Length = 474

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/393 (32%), Positives = 204/393 (51%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KTFKDLGIIDSLCDACTSLGYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQISESFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDIYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +  I+F  T     R + +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRDI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G ++ V+ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEAALGKQLPEHKTEKEEVMVLSDRVGDAQRL 435


>gi|325187582|emb|CCA22119.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325188860|emb|CCA23389.1| unknown putative [Albugo laibachii Nc14]
          Length = 417

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 175/371 (47%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+ + + +QE  +   L  ++V+  A+ G+GKT AF +     
Sbjct: 45  FEDYFLKRELLMGIFEKGFEHPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEK 104

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   +       L + PTRELA+Q    ++ +    GV   V  GG S+  +   L
Sbjct: 105 ------TETSKKHIQVLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRL 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N  HI+VGTPGR+ D       ++S+   V++DEAD++L   F+  +E +L+ + KKR+
Sbjct: 159 YNTVHILVGTPGRIMDLANKGVADLSNCSTVIMDEADKLLSPEFQPLLEQLLNHTAKKRQ 218

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    +      + ++   +N+  E             V    + + +  +   
Sbjct: 219 ICLFSATFPVTVKAFKDRFIENPYEINLMDELTLKGV-SQFYAFVEERQKVHCLNTLFSK 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++SQ  R+      R+G  R  + +
Sbjct: 278 LDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMSQAHRNRVFHEFRNGATRHLVCS 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    R+ +
Sbjct: 338 DLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAISMITYDDRFNLYRIEQ 397

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 398 ELGTEIRPIPP 408


>gi|294142025|ref|YP_003558003.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 427

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 194/366 (53%), Gaps = 9/366 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     + + L+E GY   T +Q   +   L  +D++  AQTGSGKT AF L + + 
Sbjct: 13  FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFALPILNK 72

Query: 62  L-------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
           L         E    +   A  AL + PTRELA+QV          T V  A+  GGVS+
Sbjct: 73  LTAQICLQKTEAQDSADKPAIRALVLTPTRELALQVHGSFVKYAKLTQVKSALVYGGVSI 132

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L  G  I+V TPGRL DH+R   LN++ L+ +V DEAD MLD+GF+D+I+ I+ 
Sbjct: 133 DAQAQILAAGVDILVATPGRLLDHLRRGSLNLNQLEFLVFDEADRMLDMGFKDEIDAIVK 192

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK R+ L+FSAT   +I  L+++  +D  ++ +   N    +ID R   V    +   
Sbjct: 193 QLPKTRQTLLFSATFDESIYGLSQSLLRDPKQIEVGERNAAAVEIDQRVYAVDSDRKLAL 252

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +++     +  ++F   + +  +    L +      A  G+LSQ  R   LQ  +DG 
Sbjct: 253 VTHLIESGNLQQVLIFSRKKLAADKLAANLTKAGISAQAFHGDLSQGAREKVLQGFKDGE 312

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            RV +ATDVAARGID+ DL  VI+ EL    E+ +HR GRTGRAG KG+++ ++    + 
Sbjct: 313 VRVLVATDVAARGIDIIDLNYVINYELPYKAEDYVHRIGRTGRAGNKGLAITLLCSEDEH 372

Query: 355 RAERLF 360
             E + 
Sbjct: 373 LLEEVE 378


>gi|195390582|ref|XP_002053947.1| GJ24162 [Drosophila virilis]
 gi|194152033|gb|EDW67467.1| GJ24162 [Drosophila virilis]
          Length = 710

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 192/375 (51%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE + ++G+ + + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 302 QCFAEYPDLLGE-IQKQGFAHPSPIQAQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 360

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+   +      GG + + +  D+
Sbjct: 361 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKK-YSFRQMKAVCIYGGGNRNMQISDV 419

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      R+
Sbjct: 420 ERGAEIIICTPGRLNDLVQAGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQ 479

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NI 238
            +M SAT  P +  LA++Y KD ++V + S +   +    + + +   DRD   V    +
Sbjct: 480 TIMTSATWPPGVRRLAQSYMKDPIQVCVGSLDLAATHSVEQVIELLEDDRDKFHVLKSFV 539

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVFC  +A     +  L+   F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 540 KNMSKTDKIIVFCGRKARADDVSSDLSLAGFATQCIHGNRDQSDREQAIADIKSGIVRIL 599

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  I ++    A+ 
Sbjct: 600 IATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRLGTSISFITRDDWGIAKE 659

Query: 359 L---FREANVSVVWE 370
           L     EA   V  E
Sbjct: 660 LITILEEAAQEVPEE 674


>gi|164425692|ref|XP_960011.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
 gi|161789041|sp|Q7S5D9|DHH1_NEUCR RecName: Full=ATP-dependent RNA helicase dhh-1
 gi|157071024|gb|EAA30775.2| hypothetical protein NCU06149 [Neurospora crassa OR74A]
          Length = 505

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/363 (25%), Positives = 168/363 (46%), Gaps = 7/363 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +   + +  +  +
Sbjct: 54  RDLLMGIFEAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSK 113

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA+Q  +  + L    G+ V V  GG  +  +   LQ+  HIV
Sbjct: 114 I------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIV 167

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ D    +  ++S     ++DEAD++L   F   IE +L   PK R++++FSAT
Sbjct: 168 VGTPGRILDLAGKQVADLSECPMFIMDEADKLLSQEFTPVIEQLLQFHPKDRQVMLFSAT 227

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
              ++   +         +N+  E             V    + + +  +        +I
Sbjct: 228 FPLSVKDFSDKNMTSPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSKLQINQSI 286

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC++   V    K + E  +       +++QQ R+      R+G  R  + +D+  RGI
Sbjct: 287 IFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGI 346

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R+    + 
Sbjct: 347 DIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERDLGTEIQ 406

Query: 369 WEP 371
             P
Sbjct: 407 PIP 409


>gi|308809810|ref|XP_003082214.1| MGC81303 protein (ISS) [Ostreococcus tauri]
 gi|116060682|emb|CAL57160.1| MGC81303 protein (ISS) [Ostreococcus tauri]
          Length = 382

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 115/359 (32%), Positives = 194/359 (54%), Gaps = 7/359 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A  E G+   +++Q+  +   L+ +DV+  AQTGSGKT AF L +  +LL E 
Sbjct: 26  LCKELVSACEELGWREPSAIQQKSIPEALQGRDVIGLAQTGSGKTGAFALPILQSLLDEP 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             +       +L ++PTRELA+Q+  ++E L    GV  A  +GG+ +  +   L    H
Sbjct: 86  RTYH------SLILSPTRELAIQIAEQVEALGRGIGVRTATLVGGIEMTSQAIMLGKRPH 139

Query: 127 IVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ DH+          LK +VLDEAD +L+L F ++I+ IL   P+ RR  +F
Sbjct: 140 VVVGTPGRVVDHLENTKGFGLKALKVLVLDEADRLLNLDFEEEIDKILRVIPQDRRTQLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L +   +D V+V ++++      +    + +    +D     +     A 
Sbjct: 200 SATMTSKVQKLQRACLRDPVKVEVSAKYSTVDSLRQHYLFIPAKHKDCYATYLFNELSAS 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T     +   +     F  V + G++SQ +R  ALQ  + G   + IATDVA+
Sbjct: 260 TLIVFARTCDQTRKLALIARNLGFGAVPIHGQMSQPKRIAALQKFKAGERNILIATDVAS 319

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           RG+D+P +++VI+ ++  N ++ +HR GRT RAGR G++V ++ Q      +++ R  N
Sbjct: 320 RGLDIPSVDVVINYDVPQNSKDYVHRVGRTARAGRSGLAVTMVTQYDVELYQKIERLIN 378


>gi|59711051|ref|YP_203827.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri ES114]
 gi|59479152|gb|AAW84939.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 413

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 175/367 (47%), Gaps = 5/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     +  AL E  Y   T VQ   +   L  KD+L SA TG+GK+ AF L  
Sbjct: 2   LKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  E   L   T   V    GG+S     
Sbjct: 62  LQHLD-DFPRREPGPA-RILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++  +FSAT     +     +   +   +N     R+   I               ++ 
Sbjct: 180 RKQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L         + GE++Q+ R+NA+   RDG   V
Sbjct: 240 NILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   E
Sbjct: 300 LIATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMME 359

Query: 358 RLFREAN 364
           R+ R   
Sbjct: 360 RVGRYIK 366


>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
          Length = 621

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 239 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 298

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 299 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 358

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 359 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 418

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 419 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 477

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 478 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 537

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 538 ACDESVLMDLKALLLEAKQKVPP 560


>gi|306840535|ref|ZP_07473294.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
 gi|306289550|gb|EFM60768.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp. BO2]
          Length = 549

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 193/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L   D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 111 VLLKGVEAAGMTEPKPIQTQAIPSQLEGHDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 170

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 171 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 229

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 230 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 289

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 290 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 349

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 350 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 409

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 410 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 469

Query: 369 WEPAP 373
            + AP
Sbjct: 470 IKDAP 474


>gi|242280538|ref|YP_002992667.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123432|gb|ACS81128.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 493

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 174/376 (46%), Gaps = 5/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F    + I   +   GY   T +Q   +   L+ +DV+  AQTG+GKT AF L +  
Sbjct: 3   FKQFS-FDRRIMAGIHACGYETPTPIQTKAIPEVLKGRDVMGLAQTGTGKTAAFALPIMQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +FS       L +APTRELA+Q+      L  + G+  A   GGV    + + 
Sbjct: 62  RLL--EKKFSGQGPIRVLVLAPTRELALQIHENFMELGVEAGIRSAAVFGGVGAMPQIQA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  + IV      L D +    + +  +  +VLDEAD MLD+GF  DI  I+   P++R
Sbjct: 120 ARRSSVIVACPGR-LLDLMNQGVIKLDKVDTLVLDEADRMLDMGFLPDIRKIMSKLPQRR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA         V   +       +++    V+   ++N +  +L 
Sbjct: 179 QNLLFSATMPDDIRDLADKILYRPATV-QVANTAPAKTVEHVFYPVSQHLKNNLLFKVLE 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  T+       + LA    +   L G +SQ +R  AL   RDG  +V +A
Sbjct: 238 QTDYDSLLVFTRTKHKAKNLARRLAARGHKATFLQGNMSQNQRQRALDGFRDGSFKVMVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID   +  V++ ++    E   HR GRTGRAGR G +   + ++  R    + 
Sbjct: 298 TDIAARGIDCDRITHVVNLDVPDTAETYTHRIGRTGRAGRSGSAFSFVTRDDLRLMREIE 357

Query: 361 REANVSVVWEPAPSVE 376
           +    S+        +
Sbjct: 358 KAVGYSIEHRTLEDFD 373


>gi|170091070|ref|XP_001876757.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648250|gb|EDR12493.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 661

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 113/444 (25%), Positives = 197/444 (44%), Gaps = 20/444 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + +    Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L L   +  + 
Sbjct: 87  LPANCLDVIKRLNYTAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLLPLFRHI-KDQ 145

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ + PTRELAVQ+ +E +       +      GG  +  +  +L+ GA 
Sbjct: 146 RSLEQMEGPIAVVMTPTRELAVQIHKECKAFLKVLNLRAVCAYGGSPIKDQIAELKKGAE 205

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ +
Sbjct: 206 IIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQTV 265

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NIL 239
           +FSAT    + +LA+      + + +   +   ++I+    +     + N ++     + 
Sbjct: 266 LFSATFPKQMDSLARKILHKPLEITVGGRSVVAAEIEQIVEVRPEDTKFNRLLEILGQMY 325

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF   + +     + L    +  ++L G   Q +R + +   + G   + I
Sbjct: 326 NEDPECRTLVFVDRQEAADNLLRELMRKGYLCMSLHGGKDQVDRDSTIADFKSGVVPIVI 385

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R +  +
Sbjct: 386 ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFITPEQERYSVDI 445

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ---DPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +R    S    P         +D + +     D L     Q          L + D E+ 
Sbjct: 446 YRAVKASNATIP---------KDLEELANGFLDKLKTGKAQAAGSGFGGKGLDRLDKERD 496

Query: 417 AAGFLRIHRAGLCAPEEITPVSLV 440
           A         G    E+    +  
Sbjct: 497 AREKAERKAYGEPGEEDKPTPAEE 520


>gi|282891599|ref|ZP_06300090.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498567|gb|EFB40895.1| hypothetical protein pah_c180o092 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 399

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 197/372 (52%), Gaps = 9/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   I +AL +  +   + +Q+A +   L++KD++  A+TGSGKT A  + +
Sbjct: 1   MTSFLDFGLDPTILKALEKLKFSEPSPIQKAAIPLILQKKDLIALAKTGSGKTAACAIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +         +++  AL + PTRELA+Q   E + + A+ GV      GG     ++
Sbjct: 61  CDRVDVN------SNSVQALIVVPTRELALQYATETQKIGAEKGVKTFALFGGEDAAMQQ 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  ++V TPGRL D +  + +++SH++ ++LDEADEML +GF DD+EFI+     
Sbjct: 115 SKLKHGVQVLVVTPGRLIDFVYSRQIDLSHVETLILDEADEMLSMGFYDDLEFIIQCLVH 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  +AK + +  + V++  E+     I++  +     ++++ ++ +
Sbjct: 175 EHQTLLFSATMPKQIRDIAKKHMQSPLEVSLIGEDATPDMIEHHFLYCRYHEKEHNLIEL 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARV 297
           ++      AI+FCS+R    + T VL + L + +      LSQ  RS      R  + ++
Sbjct: 235 IKTQTPTKAIIFCSSRQECEKVTYVLRKQLHETIDFLHAGLSQDIRSAVTNKFRTNKIQL 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV +RG+D   +  V    L+ + +  +HRSGRTGR  + G  + ++ Q   R   
Sbjct: 295 LVATDVVSRGLDFSSVSHVFIYHLADDLDLYIHRSGRTGRYEKAGTVITLVTQRELRTLN 354

Query: 358 RLFREANVSVVW 369
           RL +       W
Sbjct: 355 RLLKVLKKEPNW 366


>gi|145323964|ref|NP_001077571.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|332191920|gb|AEE30041.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 828

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 182/367 (49%), Gaps = 7/367 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 202 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 260

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 261 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 320

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +   +R+ ++FSA
Sbjct: 321 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 380

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   SDR   ++ +L     K  
Sbjct: 381 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGK 440

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  ++       + + +  +  ++L G   Q +R + +   ++    + IAT VAAR
Sbjct: 441 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR 500

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S
Sbjct: 501 GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS 560

Query: 367 VVWEPAP 373
              +P P
Sbjct: 561 --EQPVP 565


>gi|115453811|ref|NP_001050506.1| Os03g0566800 [Oryza sativa Japonica Group]
 gi|122246919|sp|Q10I26|RH34_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 34
 gi|13957631|gb|AAK50586.1|AC084404_11 putative translation initiation factor [Oryza sativa Japonica
           Group]
 gi|108709369|gb|ABF97164.1| Eukaryotic initiation factor 4A-3, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113548977|dbj|BAF12420.1| Os03g0566800 [Oryza sativa Japonica Group]
          Length = 404

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++
Sbjct: 30  ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     + V  CIGG S+  + 
Sbjct: 90  CQIVD------TAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDEADEML  GF+D I  +    P 
Sbjct: 144 RKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ + SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 204 ELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 264 LYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + +   R   
Sbjct: 324 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILR 383

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 384 DIEQYYSTQIDEMPMNVADLI 404


>gi|28302109|gb|AAL87139.2|AF479820_1 DEAD box RNA helicase Vasa [Cyprinus carpio]
          Length = 691

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 181/373 (48%), Gaps = 12/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 252 IMTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 311

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 312 LQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 371

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-- 173
              R++  G +++  TPGRL D I    + +S ++ +VLDEAD MLD+    + +     
Sbjct: 372 YTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMDMGFEPDMRKLV 431

Query: 174 ----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                 S + R+ LMFSAT    I  +A ++ K                   + ++   S
Sbjct: 432 GSPGMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVTS 491

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            + + ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL  
Sbjct: 492 TKRDQLLELLRSTGNERTMVFVETKRSADFIATFLCQEKMSTTSIHGDREQREREKALSD 551

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            R G+  V +AT VAARG+D+  ++ V++ +L S+ +  +HR GRTGR G  G +V    
Sbjct: 552 FRTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFN 611

Query: 349 PQNMQRRAERLFR 361
           P++    A  L +
Sbjct: 612 PESDTPLARSLVK 624


>gi|54301892|ref|YP_131885.1| ATP-dependent RNA helicase DbpA [Photobacterium profundum SS9]
 gi|46915312|emb|CAG22085.1| putative ATP-dependent RNA helicase DbpA [Photobacterium profundum
           SS9]
          Length = 462

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 128/372 (34%), Positives = 208/372 (55%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L+  GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  +
Sbjct: 10  NLHADLLKNLTSLGYESMTPIQALSLPHILAGEDVIAQGKTGSGKTAAFGLGLLEKLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV +E+  L      + V    GG+    +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   LN+  L+ ++LDEAD ML++GF+D ++ I+D++P++R+ L+
Sbjct: 124 AHIIVGTPGRIEEHVRKGTLNLDDLEILILDEADRMLEMGFQDSLDEIIDAAPQRRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  P I ++A       V   + S + + +   +   +     R  A+  +L  H  
Sbjct: 184 FSATYPPQIKSVADRIMHKPVMAKVESTHDESTIQQHFYKVDGNEQRLTALRLLLLKHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+      +  L ++ F  +AL G+L Q+ER  AL +  +    V +ATDVA
Sbjct: 244 ESTVVFCNTKREAQEVSDDLVDYGFSSIALHGDLEQRERDQALVLFANKSTSVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+  L+ + E  +HR GRTGRAG KG++  +I      +   L    +
Sbjct: 304 ARGLDIDSLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLISDKEHYKVAMLEDYLD 363

Query: 365 VSVVWEPAPSVE 376
            ++  EP PS++
Sbjct: 364 RAISGEPLPSMD 375



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
               +   +  G +QK     ++  L   SGI    +G I++  +  +V V ++ V    
Sbjct: 383 RPAMTTLQIDGGKRQKIRPGDILGALTGESGIAGAQVGKIQIFDNFAYVAVKSESVRAAM 442

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 443 KKLEDGK 449


>gi|113968755|ref|YP_732548.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-4]
 gi|114049101|ref|YP_739651.1| ATP-dependent RNA helicase RhlB [Shewanella sp. MR-7]
 gi|123030016|sp|Q0HN76|RHLB_SHESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123326096|sp|Q0HQL1|RHLB_SHESR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|113883439|gb|ABI37491.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
 gi|113890543|gb|ABI44594.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 439

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+   T +Q   L   L+ KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   T + V +  GG S   +R+ 
Sbjct: 71  LLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
           L  G  I++GT GR+ D++R   ++++ ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNAD 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  D V+V IA E +   +I       +  D+   ++ +
Sbjct: 191 QRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKIRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+ S       L     +V  L+G++ Q++R   L+    G+  + 
Sbjct: 251 IEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +    N S+ 
Sbjct: 371 IESYINHSIP 380


>gi|301059813|ref|ZP_07200707.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
 gi|300446139|gb|EFK10010.1| putative ATP-dependent RNA helicase RhlE [delta proteobacterium
           NaphS2]
          Length = 429

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 185/369 (50%), Gaps = 8/369 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    +   +   GYV+ T +Q   +   L   D++  AQTG+GKT AF L +  
Sbjct: 3   FKTF-NFHPRVAAGVVAAGYVDPTPIQARAIPQVLDNHDIMGVAQTGTGKTAAFVLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+A+  +        AL +APTRELA Q+ + +E L  +T V      GGV +H +  +
Sbjct: 62  RLMAKKSK-----GVRALIMAPTRELAEQIHQAIEVLGRETHVKSVTVYGGVGIHPQIEN 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L   AHIVV  PGRL DH+  K ++ S L+ +V+DEAD+M D+GF  DI  IL   PKKR
Sbjct: 117 L-KHAHIVVACPGRLLDHMNRKTVDFSRLEMLVVDEADQMFDMGFLPDIRRILARLPKKR 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+ P I  L  +   +   V I +     +       +         +  +  
Sbjct: 176 QTLLFSATMPPEIRRLEGDILINPSMVQIGAVAPAETVRHALYPVPHHLKTALLLKLLGD 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K+ +VF  T+       K L    +   +L G LSQ  R  AL+  RDG  ++ +A
Sbjct: 236 TVV-KSVLVFTRTKYRAKSLGKKLVSAGYPCASLQGNLSQGRRQAALEGFRDGTYKILVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++ S PE  +HR GRTGRA R G +   +    +     + 
Sbjct: 295 TDIAARGIDITRVSHVINYDIPSTPEAYIHRIGRTGRATRSGEAFTFMTGEDKGMVRAIN 354

Query: 361 REANVSVVW 369
           R  + S+  
Sbjct: 355 RILDASIEQ 363


>gi|258546120|ref|ZP_05706354.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
 gi|258518545|gb|EEV87404.1| ATP-dependent RNA helicase RhlB [Cardiobacterium hominis ATCC
           15826]
          Length = 444

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 128/404 (31%), Positives = 207/404 (51%), Gaps = 19/404 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    I EAL +    + T +QE  L   L   DV+  AQTG+GKT AF ++L   
Sbjct: 11  FSSLPIHPAIQEALEDNRLTHTTPIQEKTLPLTLGGHDVMGLAQTGTGKTAAFLISLYHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL  N     A  P A+ +APTRELAVQ+ ++ + + A TG+      GGVS+  +R  L
Sbjct: 71  LLT-NPVHPKAKGPWAIVLAPTRELAVQIKKDADQIGAYTGLNSLAIYGGVSMEHQRNLL 129

Query: 122 QNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +N    I++GTPGR+ D  + K + + +++  VLDEAD M DLGF DD+ ++L   P   
Sbjct: 130 ENAPIDIIIGTPGRIIDLYKQKIIRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQMPPAH 189

Query: 181 RMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             L   FSAT++  +  LA  Y      V+I S      +I       A  ++   ++ +
Sbjct: 190 ERLNLLFSATMAQKVQELAYEYFNAPETVSIESGQATADNITQILYHTAKHEKTPLLIGL 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       +++F +T+  + R + VL  + +   ALSG++ Q++R   ++  + G   + 
Sbjct: 250 LNRDKPARSMIFLNTKRDLERLSVVLEANGYPNAALSGDIPQKKREKIIKDFQSGAVNIV 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ +PD+  V + +L    E+ +HR GRT RAG  G ++    +        
Sbjct: 310 VATDVAARGLHIPDVTHVFNYDLPQVAEDYVHRIGRTARAGASGTAISFACEEYVYSLPE 369

Query: 359 LFREANVSVVWEPA----------PSVEAIR---ERDAQRILQD 389
           +    +  +   P           PS EA+R   E+ A+R+ ++
Sbjct: 370 IEHYIHNKLPVFPLDEELLADVIPPSEEALRALNEQKAERLARN 413


>gi|21355075|ref|NP_649767.1| CG7878 [Drosophila melanogaster]
 gi|7298989|gb|AAF54192.1| CG7878 [Drosophila melanogaster]
 gi|15291973|gb|AAK93255.1| LD33749p [Drosophila melanogaster]
 gi|220946004|gb|ACL85545.1| CG7878-PA [synthetic construct]
 gi|220955750|gb|ACL90418.1| CG7878-PA [synthetic construct]
          Length = 703

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 184/375 (49%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++ E +++ G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 286 QCFAEYPDMLEE-ITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 344

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+  G+      GG + + +  DL
Sbjct: 345 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKK-YSFRGMKAVCVYGGGNRNMQISDL 403

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I  ++      R+
Sbjct: 404 ERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 463

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNI 238
            +M SAT  P +  LA++Y K+ ++V + S +           + +   +   +     +
Sbjct: 464 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFV 523

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+FC  +      +  L    F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 524 KNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 583

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+    +     A+ 
Sbjct: 584 VATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKE 643

Query: 358 --RLFREANVSVVWE 370
              + +EA   V  E
Sbjct: 644 LIEILQEAEQEVPDE 658


>gi|143456452|sp|Q0DB53|RH52A_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 52A
 gi|51090883|dbj|BAD35456.1| putative DEAD-box protein 3 [Oryza sativa Japonica Group]
 gi|222635845|gb|EEE65977.1| hypothetical protein OsJ_21891 [Oryza sativa Japonica Group]
          Length = 602

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 124/393 (31%), Positives = 201/393 (51%), Gaps = 28/393 (7%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   ++  GY + T VQ   +   L  +D++  AQTGSGKT AF L + S 
Sbjct: 86  FEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSG 145

Query: 62  L---------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           L           E   F+ A+A P AL +APTRELA Q+  E +    +TG+ V V  GG
Sbjct: 146 LVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGG 205

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             ++ + RDL+ GA I+V TPGRL D +    +++  +K +V+DEAD MLD+GF   I  
Sbjct: 206 TPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRK 265

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++     R    + ++FSAT  P I  LA ++  + + + +         I  +  L++
Sbjct: 266 IVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLS 325

Query: 228 LSDRDNAIVNILRYH---------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             ++   ++++L+                +VF  T+         L    F   A+ G+ 
Sbjct: 326 DGEKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDR 385

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +QQER +AL+  + G   + +ATDVA+RG+D+P++  VI+ +L  + E+ +HR GRTGRA
Sbjct: 386 TQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRA 445

Query: 339 GRKGMSVFVIPQNMQRRAE---RLFREANVSVV 368
           G+ G +     ++    A+    L  EA   V 
Sbjct: 446 GKAGSATAFFTESDHSLAKGLLELMTEAKQDVP 478


>gi|320590896|gb|EFX03337.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 530

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEEFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPALEK 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L     + V V  GG  +  +   L
Sbjct: 109 INPKVSKI------QCLILVPTRELAMQTSQVCKSLGKHLNINVMVTTGGTGLRDDIVRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q   HIVVGTPGR+ D       ++S     ++DEAD++L   F   IE +L   PK R+
Sbjct: 163 QEAVHIVVGTPGRILDLASKNVADLSECPMFIMDEADKLLSAEFTPVIEQLLQFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +         +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPLSVKDFSDKNMVSPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       +++QQ R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +     + R
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLINWDDRLNLYNIER 401

Query: 362 EANVSVVWEPA 372
           +    +   PA
Sbjct: 402 DLGTEIQPIPA 412


>gi|311249333|ref|XP_003123579.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
 gi|311249349|ref|XP_003123587.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Sus
           scrofa]
          Length = 483

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/478 (24%), Positives = 201/478 (42%), Gaps = 23/478 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVD----VLLAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++    ++L   D
Sbjct: 363 IEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAANFDEKKEINKRKQMILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           P+  A   A   +I +      E++          R        +    +  +   S 
Sbjct: 423 PDLEAKRKAELAKIKQKNRRFKEKVEQALQRQKAGRAGHGGCPPRAQPRAHSSPAPSQ 480


>gi|171463843|ref|YP_001797956.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193381|gb|ACB44342.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 482

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 202/379 (53%), Gaps = 6/379 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+N  +   + + ++E G+   T+VQ  ++   L   D+LV++QTGSGKT AF L L + 
Sbjct: 21  FQNFALAASLLKNVAELGFTQATAVQAQVIPAALAGSDLLVNSQTGSGKTAAFLLPLINQ 80

Query: 62  LLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+ +N   SP  +   P  L + PTRELA QV  +   L      +    + G   + ++
Sbjct: 81  LIEDNPNNSPVPSRAQPKVLVLCPTRELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQ 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                GA +VV TPGRL D    K + +  +K +V+DEAD MLD+GF DD+E I      
Sbjct: 141 IQALKGALLVVATPGRLLDLCDSKAIRLDDVKQLVIDEADRMLDMGFADDLEAIDKRCAG 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           + + LMFSAT +P I +LA     +A R+ +A    +H++I+ +     ++S +   + +
Sbjct: 201 RNQTLMFSATFAPKIMSLANELTTNAKRIELAHAGEKHANIEQKLHWADSMSHKHKLLEH 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       A+VF ST+    +    L  + ++  AL G + Q  R   L+ +R GR ++
Sbjct: 261 ILADADLDQAVVFASTQVESEKIADTLRANGYEATALHGAMPQAVRMRRLESLRKGRTKI 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P +  VI+  L   PE+  HR GRTGRAGR G+++ ++    + +  
Sbjct: 321 LVATDVAARGIDVPRISHVINFGLPMKPEDYTHRIGRTGRAGRNGVAITLVEHRDRAKIR 380

Query: 358 RLFREANVSVVWEPAPSVE 376
            + R     +V      +E
Sbjct: 381 NIERFTQQDIVASVIAGLE 399


>gi|157377241|ref|YP_001475841.1| ATP-dependent RNA helicase RhlB [Shewanella sediminis HAW-EB3]
 gi|189040083|sp|A8G0U0|RHLB_SHESH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157319615|gb|ABV38713.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 435

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/391 (32%), Positives = 209/391 (53%), Gaps = 14/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F +      I  AL+E G+   T +Q   L   L++KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL          + P A+ +APTRELA+Q+ ++ + L   TG+ V +  GG S   +R+ 
Sbjct: 71  LLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
           L  G  I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P   
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   ++ +
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +T+ S  +    L     +V  L+G++ Q++R   L++  +G+  V 
Sbjct: 251 LEEDWPDKAIVFSNTKHSCEKLWSWLEGDGHRVGLLTGDVPQKKRIRILELFTEGKLDVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           +    N ++          +   D++ +L D
Sbjct: 371 IEEYINHTIP---------VTNYDSEALLDD 392


>gi|325068259|ref|ZP_08126932.1| DEAD/DEAH box helicase domain protein [Actinomyces oris K20]
          Length = 507

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 137/425 (32%), Positives = 201/425 (47%), Gaps = 18/425 (4%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+ I EAL  +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L
Sbjct: 70  KTFADFGVEPE-ICEALDAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPL 128

Query: 59  ASTLL---AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               L    E     PAS  P AL I PTRELA QV  EL    AK  V +    GG + 
Sbjct: 129 LMDTLGPGEEGWDEDPASGSPQALVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAY 188

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  DL+ GA +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL 
Sbjct: 189 EPQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILA 248

Query: 175 SSPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            +   R  ++FSAT+  A+                 +   E      +          ++
Sbjct: 249 RTRADRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNK 308

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R
Sbjct: 309 VEVVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATGALHGDLGQGAREQALRAFR 368

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  +
Sbjct: 369 NNKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 428

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R   + +   + +  EP  +        ++ +  D    + + G         L   
Sbjct: 429 DVPRWRIIAKALGLPI-EEPVETY-----HTSEHLFSDLSIPEKVTG-RLPRHKRTLEGL 481

Query: 412 DPEKI 416
           D E+I
Sbjct: 482 DAEEI 486


>gi|322509533|gb|ADX04987.1| Putative ATP-dependent RNA helicase [Acinetobacter baumannii
           1656-2]
          Length = 561

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 153/581 (26%), Positives = 235/581 (40%), Gaps = 42/581 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 7   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 66

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 67  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 127 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 187 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 246

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 247 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G ++ +     
Sbjct: 307 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGQAITLATYRE 366

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +   L       +       +E        R            G              
Sbjct: 367 RGKIRALEDYLEARLNVSEIEGLEPSPPPARPRREGGRGGNGGRDGRRGGGFGGGRRFEG 426

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK----VGGGSRDNFKGSSW 468
                  F R        P           R  F  + R  +            F     
Sbjct: 427 EGN----FKRREGGRDDRPRRSFDDKPRGERPAFGGEDRPRREFNSDRPRREGGFNDKPR 482

Query: 469 F---SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           F     + G++   + R             ++S G                G D  RR  
Sbjct: 483 FDSNDDNRGNRVDYKPRRENGF----GDRPQRSFG----------------GEDRPRREG 522

Query: 526 KLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                 +  + G E+P  R  +   F  ++  +   ++F R
Sbjct: 523 GFGDRPKRSFGGEERP-RRAVREEHFNQESRGERR-RKFDR 561


>gi|307173483|gb|EFN64393.1| Probable ATP-dependent RNA helicase DDX27 [Camponotus floridanus]
          Length = 694

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 128/575 (22%), Positives = 247/575 (42%), Gaps = 40/575 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   ++  T +Q A +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 120 NLSRPLLKAITAMNFIQPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLLYR 179

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                P   P     L + PTREL VQV +  + L   T V V + +GG+ V  +   L+
Sbjct: 180 -----PLDGPAVSRVLVLVPTRELGVQVYQVTKQLTQFTTVEVGLSVGGLDVKVQESVLR 234

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+      ++++++ ++LDEAD MLD  F + +++I+    + ++
Sbjct: 235 KNPDIVIATPGRLIDHLNNAPTFSLNNIEVLILDEADRMLDEYFAEQMKYIVKQCARTKQ 294

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNI 238
            ++FSAT++  +  LA     + +++ + S      ++    + +       R+  +  +
Sbjct: 295 TILFSATMTEEVKDLAAVSLNNPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 354

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + ++F  T+    R   +L     +V  L G L+Q +R   LQ  ++    + 
Sbjct: 355 VCRTFHDHTMIFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLENLQKFKEEEIDIL 414

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   + 
Sbjct: 415 LATDVAARGLDISGVKTVINFMMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERFLVKE 474

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + ++A   +     P    I E+  +++    + ++ I  +EK         +D E    
Sbjct: 475 IIKQAKNPIKNRIIPP--DIIEKYNKKLQSLEVDVERILQEEK---------NDKE---- 519

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
              +I        + +        R  F+      K     R + K      +S   K +
Sbjct: 520 -LAKIENQANRVEKLLKDEDTKDQRSWFQTKKERKKEKDNLRLSKK-----QISKNKKHE 573

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
            E   ++    + +    +         D    E+        R   K +K  +++ +  
Sbjct: 574 KEPSNIVEEKKKKTQNEPK-----DTAEDRAKRELEKIAAYQARLAKKSNKQKKIRVVMD 628

Query: 539 EKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           E    R +   G   ++    AT      K   K 
Sbjct: 629 EY--NRDFTKKGPLKRSRSSFATDLTDTSKKGVKR 661


>gi|89891113|ref|ZP_01202621.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
 gi|89516757|gb|EAS19416.1| ATP-dependent RNA  helicase, DEAD/DEAH box family [Flavobacteria
           bacterium BBFL7]
          Length = 449

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 214/459 (46%), Gaps = 15/459 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   +   L++ G+  +T +QE      L  +D++  AQTG+GKT+ + L L
Sbjct: 1   MKNFEELNLGTPLRNGLNDLGFTTMTPIQEQAFPVILSGRDMIGIAQTGTGKTLGYMLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++    P  L + PTREL VQV  ++E   A   + V    GG +++ ++
Sbjct: 61  LHEL-----KYAETLDPRILVLVPTRELVVQVVEQIEAYAAYINIRVLGVYGGTNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + + +G  I+V TPGRL D I  + + + + K +V+DE D MLDLGFR  +  I D  PK
Sbjct: 116 KAVTDGVDIIVATPGRLYDLIVAQTVRLKYCKKIVIDEVDVMLDLGFRFQLTNIFDHLPK 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDN--AI 235
           KR+ +MFSAT++  I    K+Y  +  +V++A    +  +I+     +     + N    
Sbjct: 176 KRQNIMFSATMTDQIEDFIKSYFFNPEKVSVAVSGTRLENIEQTCYPVENFYTKANLLMD 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +        K  +   + +++      +L  +  ++  +    +Q  R  ++++   G  
Sbjct: 236 LLTDVEEFKKVLVFVGNKKSADRLQDYMLERYGDEIAVIHSNKTQNYRLRSIELFDTGER 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ IATDV ARG+DL  +  VI+ ++ S PEN +HR GR+GRA  KG ++    +  +  
Sbjct: 296 RILIATDVMARGLDLEKISHVINIDVPSFPENYMHRIGRSGRAEEKGKTILFYTEKEKED 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              +    +  +   P P  E +   + +   + P+  +     +    +   + H+  +
Sbjct: 356 KIAIEALMDYKIPEIPFP--EEVEVSNQKTPEEKPVVRELFNPHKVIEEERGASFHEKSE 413

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
                 +++  G    E          R     + R  K
Sbjct: 414 ---KNKKVNLGGSYRREIAKKYKKPKTRGDKNANRRRKK 449


>gi|15219185|ref|NP_173078.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75336890|sp|Q9SA27|RH36_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|4966350|gb|AAD34681.1|AC006341_9 Similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family [Arabidopsis thaliana]
 gi|332191310|gb|AEE29431.1| DEAD-box ATP-dependent RNA helicase 36 [Arabidopsis thaliana]
          Length = 491

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 204/424 (48%), Gaps = 21/424 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE +   +   E   E G    T VQ   +   L  +DVL  AQTGSGKT AF L + 
Sbjct: 58  TNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  + + L +   +  +V +GG+ +  +  
Sbjct: 118 HRLAEDP------YGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTM 171

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNIS---HLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            L +  HIV+ TPGR+   +             K +VLDEAD +LD+GF+D++  I    
Sbjct: 172 SLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCL 231

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  +  L ++    A         +    +  + +      ++  +V
Sbjct: 232 PKSRQTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLV 291

Query: 237 NILRYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +IL     K   +A++F ST  +  R + +L E   + +A+    SQ  R +AL   + G
Sbjct: 292 HILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSG 351

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P ++LVI+ ++  +P + +HR GRT RAGR G++V +I +   
Sbjct: 352 KVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDV 411

Query: 354 RRAERLFREANVSVVWEP----APSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDV 406
           +   ++  E    +          S+E  +   A+R+    +  +  +    D +K+   
Sbjct: 412 KLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLDNGFEDKVKDRRKLKRK 471

Query: 407 LLAK 410
            LA 
Sbjct: 472 TLAD 475


>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADSMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|146197776|dbj|BAF57607.1| DEAD box RNA helicase Me31B [Dugesia japonica]
          Length = 503

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 181/372 (48%), Gaps = 9/372 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F++  + + I + + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ + L 
Sbjct: 49  NSFDDFCLKRDILKGIYEKGWEMPSPIQEASIPISLIGRDILARAKNGTGKTGAYSIPLL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++         + + PTRELA+Q  +    L   T   + V  GG S+  +  
Sbjct: 109 EKIDPSINQI------QGIILVPTRELALQTSQICTELAKHTETKIMVTTGGTSLKDDIV 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ   HI++ TPGR+ D I+   ++ +  K +V+DEAD++L   F + I++I+   P +
Sbjct: 163 RLQQTVHIILATPGRVNDLIKRDIVSTNFCKILVIDEADKLLSADFEEVIDYIISKLPTQ 222

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+++++SAT   ++    + + +D   +N+  E             V    + + +  + 
Sbjct: 223 RQIMLYSATFPQSVQQFLEKHMRDPYEINLMDELTLKGI-SQYYAYVQERQKVHCLNTLF 281

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC+T   V    K + +  +    +  +++Q  R+      R+G  R  +
Sbjct: 282 SRLQINQSIIFCNTAQRVELLAKKITDLGYSCYYIHAKMNQVYRNRVFHEFRNGNCRNLV 341

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+  RGID+P + +VI+ +     E  LHR GR+GR G  G++V +I  + +   + +
Sbjct: 342 CTDLFTRGIDIPSVNVVINFDFPKYAETYLHRIGRSGRYGHLGVAVNLITYDDRFALKNI 401

Query: 360 FREANVSVVWEP 371
             + N  +   P
Sbjct: 402 ETQLNTEIKAIP 413


>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
 gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 481

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 189/369 (51%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQRLVQRGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIAYGRGLDLRFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  +A N  +  V ++++  N   S I    V V   ++ +  ++++  +G ++A+
Sbjct: 189 FTDDIRAMAANILRGPVNISVSPPNATASRIKQWVVPVDKKNKPDLFMHLVAENGWQHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKAGEVQMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLP 368

Query: 369 WEPAPSVEA 377
            +  P  EA
Sbjct: 369 RKEEPGFEA 377


>gi|224096586|ref|XP_002310663.1| predicted protein [Populus trichocarpa]
 gi|222853566|gb|EEE91113.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/367 (29%), Positives = 187/367 (50%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  L P ++ +DV+  AQ+G+GKT    L     +   N
Sbjct: 41  LKEDVLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTACQLVDTAN 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q  + +  +     + V  CIGG SV  + R L+ G H
Sbjct: 101 REV------QALILSPTRELAEQTEKVITAIGENINIQVHACIGGKSVGEDIRKLEYGVH 154

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+CD I+ + L    ++ +VLDE+DEML  GF+D I  +    P + ++++ S
Sbjct: 155 VVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLIS 214

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D V++ +  +      I    V +     +   + ++       
Sbjct: 215 ATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTIT 274

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T  + E  F V A+ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 275 QAVIFCNTKRKVDWLTAKMVEFNFTVSAMHGDMPQRERDAIMSNFRLGETRVLITTDVWA 334

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  + 
Sbjct: 335 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRILRDIEQYYST 394

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 395 QIDEMPM 401


>gi|212636948|ref|YP_002313473.1| ATP-dependent RNA helicase SrmB [Shewanella piezotolerans WP3]
 gi|212558432|gb|ACJ30886.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 410

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 9/386 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE++     + E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L    
Sbjct: 5   LFEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    RF   +    L + PTRELA Q+ R    L     + +++  GGV    +   
Sbjct: 65  HIIDFPRRFGGQA--RVLVLTPTRELASQIHRYASHLATDLDLDISIITGGVPYAPQEEA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V TPGRL +++     N   ++ +V+DEAD MLD+GF   +E I   S  ++
Sbjct: 123 LKKNVDILVATPGRLMEYLDKGLFNAEEVEVLVIDEADRMLDMGFSAVVETIAIESVGRK 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           + ++FSAT+  +      +          A   R      ++ V        +   +  I
Sbjct: 183 QTMLFSATLEGSDVGRFSHQLLSNPVKLEAEAPRSEKAKIHQWVHIADDREHKFALLYAI 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + AIVF  TR +V+    +L +       + G++ Q+ R  AL     G   V 
Sbjct: 243 LQQEEVERAIVFVKTREAVASLDGLLQKQGITCSFMRGDMEQKARFQALGRFTKGEVNVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   +
Sbjct: 303 LATDVAARGIDVDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGK 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     +       ++ +R ++ +
Sbjct: 363 IERYIEQPLKRR---FIKDLRPKNKE 385


>gi|71897163|ref|NP_001025820.1| eukaryotic initiation factor 4A-III [Gallus gallus]
 gi|82197884|sp|Q5ZM36|IF4A3_CHICK RecName: Full=Eukaryotic initiation factor 4A-III;
           Short=eIF-4A-III; Short=eIF4A-III; AltName:
           Full=ATP-dependent RNA helicase DDX48; AltName:
           Full=ATP-dependent RNA helicase eIF4A-3; AltName:
           Full=DEAD box protein 48; AltName: Full=Eukaryotic
           translation initiation factor 4A isoform 3
 gi|53127756|emb|CAG31207.1| hypothetical protein RCJMB04_3e17 [Gallus gallus]
          Length = 412

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 40  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 99

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 100 CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 153

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 154 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 213

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 214 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 273

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 274 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 333

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 334 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 393

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 394 EQYYSTQIDEMPMNVADLI 412


>gi|120599647|ref|YP_964221.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120559740|gb|ABM25667.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 481

 Score =  190 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 186/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE         P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAEILVSDGNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APVHQTMLFSATYSDAVKQLAQKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  + G+ R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 TEIEALIEQKLPVSVQPGYEE 379


>gi|330896875|gb|EGH28465.1| helicase [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 445

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGGCAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|297834230|ref|XP_002884997.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330837|gb|EFH61256.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTHDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|294661382|ref|YP_003573258.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336533|gb|ACP21130.1| hypothetical protein Aasi_1916 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 575

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 194/372 (52%), Gaps = 14/372 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +  V+ +AL +  +   T++Q   +   L++KD+L SAQTG+GKT+AF + L
Sbjct: 1   MTNFQEMGLSPVLTQALDKLSFTQPTAIQAKAIPLALQQKDILGSAQTGTGKTLAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117
            + LL++          + L + PTRELA QV   + + L+  + +  A+ IGG   +++
Sbjct: 61  INKLLSDPTS-------MGLILTPTRELAQQVATNINQLLFKSSFIKTALLIGGEPYNKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++   I++GTPGR+ DH+     N   +  ++LDE D M D+GF   +E I+   P
Sbjct: 114 LAQLRSNLRIIIGTPGRVIDHLERGSFNPKDIDFLILDETDRMFDMGFSIQLEQIVSQLP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNA 234
            +R+ LMFSAT  P +  LA  Y +   R+ +   +       ++    + +   ++   
Sbjct: 174 TQRQTLMFSATFPPKVEKLAAKYMQSPERIFMNEFDSMAIVAQNLTQEILEIKEENKYFE 233

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L        +VF  T+ +    +  L +  +   A+ G L Q +R   ++  R GR
Sbjct: 234 LLTQLNSREGT-ILVFVKTKDNAEHLSLRLNKEAYNTCAIHGNLRQTKRERVMRAFRQGR 292

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATD+AARG+D+P ++ VI+ ++   PE+ +HR GRT RAG KG ++  +    ++
Sbjct: 293 HQIMVATDIAARGLDVPHVKHVINYDIPHAPEDYVHRIGRTARAGAKGFALSFVSSQDRK 352

Query: 355 RAERLFREANVS 366
           R   +    N  
Sbjct: 353 RWNAIQDLLNPK 364


>gi|171691382|ref|XP_001910616.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945639|emb|CAP71752.1| unnamed protein product [Podospora anserina S mat+]
          Length = 490

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 195/372 (52%), Gaps = 10/372 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T++Q+  +   L+++D++  A+TGSGKT AF L + 
Sbjct: 62  KTFKDLGIVDSLCEACDRLGYKQPTAIQQEAIPLALQDRDIIGIAETGSGKTAAFALPIL 121

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +           AL +APTRELA Q+ +  E L +   +  A+ +GG+ + ++  
Sbjct: 122 QALLDKPQP------LFALVLAPTRELAAQIAQSFEALGSLINLRCALLLGGLDMVQQAI 175

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH  + KG ++ +L+  V+DEAD +LD+ F   +E IL   P+
Sbjct: 176 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYCVMDEADRLLDMDFGPILEKILKFLPR 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D ++VN+  S+ +  S +    + +    +D   + 
Sbjct: 236 ERRTFLFSATMSSKVESLQRASLRDPLKVNVSTSKYQTVSTLVSNYLFIPHIHKDTYFIY 295

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      K  IVF  T     R   +L       + L G LSQ  R  AL   R G   +
Sbjct: 296 LCNEFAGKTMIVFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALSKFRAGTRNI 355

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q       
Sbjct: 356 LVATDVAARGLDIPNVDCVINYDLPQDSKTYIHRVGRTARAGKSGHALSIVTQYDLEIWT 415

Query: 358 RLFREANVSVVW 369
           R+       +  
Sbjct: 416 RIEAALGTKLTE 427


>gi|91228021|ref|ZP_01262106.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269964531|ref|ZP_06178770.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91188250|gb|EAS74549.1| ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|269830658|gb|EEZ84878.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 439

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L   TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIYNDAESLTESTGLKTALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAVNLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + E D+  ++QD
Sbjct: 376 EHTIP---------VSEYDSSALIQD 392


>gi|84994752|ref|XP_952098.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302259|emb|CAI74366.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 416

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 168/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + L   
Sbjct: 45  FEDYFLKRELLMGIFEKGFERPSPIQEESIPVALAGHDILARAKNGTGKTAAFVIPLLQK 104

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +         L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 105 LDTSEPQI------QGLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRL 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+ GTPGR+ D        +S    VVLDEAD+ML   F   +E +L   P +++
Sbjct: 159 YKPVHILCGTPGRILDLTNKGVAVLSQCATVVLDEADKMLSQEFCPIVEALLKFLPTEKQ 218

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT   ++    + Y  +A  +N+  +             V    + + +  +   
Sbjct: 219 IILYSATFPASVQAFKEQYLPNAHEINLMDDLTLKGI-TQFYAYVEERQKVHCLSTLFAR 277

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  F    +  ++ Q  R+      R+G  R  +++
Sbjct: 278 LQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVSS 337

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID   + +V++ +   N    LHR GR+GR G  G+++ ++ +  +    ++  
Sbjct: 338 DLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKESLFKIEE 397

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 398 ELATEIKPIPA 408


>gi|298208537|ref|YP_003716716.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848460|gb|EAP86329.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score =  190 bits (481), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 118/417 (28%), Positives = 194/417 (46%), Gaps = 10/417 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+  N+   + +AL E G V+ T +QE      +  +DV+  AQTG+GKT A+ L + 
Sbjct: 3   TTFKDLNLSPSLQKALDELGIVHPTPIQEESFPVIMSGRDVVGIAQTGTGKTYAYALPVL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      +S    P AL I PTREL VQV  E+E L     + +    GG +++ +++
Sbjct: 63  RLL-----PYSRQVNPRALIIVPTRELVVQVVSEIEKLCTLNDMRILGVYGGTNINTQKK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  ++V TPGRL D      L + +++ +V+DE D MLDLGFR  +  ILD  PKK
Sbjct: 118 AVVEGCDVLVATPGRLYDLAVSHVLQLKNIQKLVIDEVDVMLDLGFRFQLVNILDILPKK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAIV 236
            + ++FSAT++  ++++   +  + +++++A       +I                   +
Sbjct: 178 HQNILFSATMTDEVSSMISEFFNNPIKISVAKSGTPLVNIQQYRYNVPNYYTKQNLIIHL 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   K  I   + R +   F  V      Q   +    +Q  R N+++    G  R
Sbjct: 238 LEDVETYEKTLIFVPNKRIADRLFAVVDKTFPDQASVIHSNKTQNYRLNSIEAFETGEHR 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDV ARG+D+ D+  VI+ +  S PEN LHR GRTGRA +KG ++ +  ++     
Sbjct: 298 IMIATDVMARGLDIDDISHVINMDTPSYPENYLHRIGRTGRAEKKGTALVLTSESEVEWL 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           + +       V      +   I +  A    Q P+ + +    E         K D 
Sbjct: 358 KTIEELMETKVDTIEMTNDVEISKELAPEEQQKPVEIYNPLKKEPSKGKAFHEKKDK 414


>gi|328848641|gb|EGF97845.1| hypothetical protein MELLADRAFT_46164 [Melampsora larici-populina
           98AG31]
          Length = 659

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 127/505 (25%), Positives = 229/505 (45%), Gaps = 17/505 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+ E G+ ++T VQ   + P +  +DVL +A+TGSGKT+AF +     L   
Sbjct: 133 NLSPGTAKAIEEMGFKHMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLVPAVEML--S 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +   A+ ++PTRELA+Q+    + L        A+ IGG +   E   L  G 
Sbjct: 191 RLQFKPRNGTGAIIVSPTRELALQIFGVAQELMKHHSQTFAITIGGANRKAEAEKLIKGV 250

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++       S+LKA+++DEAD +L++GF D++  I+   P + R  M
Sbjct: 251 NLLISTPGRLLDHLQNTKGFVFSNLKALIIDEADRILEIGFEDEMRKIISLLPSENRQSM 310

Query: 185 ----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                  T    +  ++       + V+   ++     ++   V+     R   +   L+
Sbjct: 311 LFSATQTTKVQDLARISLRPGPLYINVDANKQDATVQGLEQGYVVCESEKRFLLLFTFLK 370

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  IVF S+  SV    ++L       + L G+  QQ+R+N      +    + + 
Sbjct: 371 KSLNKKVIVFFSSCNSVKYHGELLNYIDIPALDLHGKQKQQKRTNTFFEFCNAPTGILLC 430

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S+  +  +      R  
Sbjct: 431 TDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSELGFL-RFL 489

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V +     P+ + A  +    +++    +L+    D  +      A +  +KI   
Sbjct: 490 KLAKVPLNEYSFPTDKLANVQTQLTKLISKNYYLNQSARDGFRSYIQSYASYSLKKIFNV 549

Query: 417 -AAGFLRIHRA-GLCAPEEIT-PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +    ++ +A G   P  +  P+S +   D+ R  +          ++     W S   
Sbjct: 550 NSLDLNKVGQAFGFTVPPAVNIPISALKNSDKKRLKTSESHDPEQDVEDKSNGDWTSDEE 609

Query: 474 GSKQKAEARWLMPMLCRSSGINRQS 498
             +     R   P + R S  NR+ 
Sbjct: 610 -DEDNQGPRK-RPTVRRESNTNRRK 632


>gi|254284073|ref|ZP_04959041.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
 gi|219680276|gb|EED36625.1| RNA helicase DbpA [gamma proteobacterium NOR51-B]
          Length = 474

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 207/405 (51%), Gaps = 13/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P      +AL   GY  +T VQ   L   L  +DV+V A+TGSGKT AF L L +T
Sbjct: 19  FSSLPLAPNQLDALDALGYKAMTPVQAQSLPLILSGRDVIVRAKTGSGKTAAFALGLLAT 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   N RF       A  + PTRELA QVG+E+  L ++   +  V + G      +RD 
Sbjct: 79  I---NPRF---FGVQAFVMCPTRELADQVGKEIRRLASRMPNIKLVLLCGGVPLGPQRDS 132

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +GAHIVVGTPGR+ DH++   LNI  +K +VLDEAD MLD+GF D I+ I+   P  R
Sbjct: 133 LSHGAHIVVGTPGRIEDHLKRGSLNIESVKTLVLDEADRMLDMGFADAIKQIISGMPGDR 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  ++++ Q++   V +       + I+     V   +R   +  +  
Sbjct: 193 QTLLFSATYPQDIQRISRSIQRNPASVTVDDVAHNEAVIEQLFYEVNKHERQATLCALFE 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   NA+VFC+T+         L     +  A+ G+L Q+ER   L  + +    V +A
Sbjct: 253 HYRPANAVVFCNTKKQCDEVAVFLRGQGIEARAIHGDLEQRERDQVLLQLTNDSCPVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DLE+V++ EL  +PE  +HR GRTGRAG  G +  ++      R   + 
Sbjct: 313 TDVAARGLDIKDLEMVVNYELPRDPEVYVHRIGRTGRAGAVGKACSIVVPAESPRIRAIE 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                    +   S++    RD    L   +    +    K+ V 
Sbjct: 373 DYKQQPCACDVLASLD----RDPDYQLTGAMVTIQLDAGRKQKVR 413



 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 9/128 (7%)

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK---------VGGGSRD 461
            DPE       R  RAG         V   S R R  +D +                   
Sbjct: 335 RDPEVYVHRIGRTGRAGAVGKACSIVVPAESPRIRAIEDYKQQPCACDVLASLDRDPDYQ 394

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                    L  G KQK     ++  L   +G++   IG I +    ++V VS   +   
Sbjct: 395 LTGAMVTIQLDAGRKQKVRPGDVLGALTGDAGLSGDQIGKISIFDTSSYVAVSRQALRQA 454

Query: 522 RRTVKLDK 529
              +   K
Sbjct: 455 MNYLTQGK 462


>gi|195330800|ref|XP_002032091.1| GM23704 [Drosophila sechellia]
 gi|194121034|gb|EDW43077.1| GM23704 [Drosophila sechellia]
          Length = 699

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 183/375 (48%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 277 QCFAEYPDMLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 335

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E+   Y+  G+      GG   + +  DL
Sbjct: 336 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVNK-YSFRGMKAVCVYGGGDRNMQISDL 394

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I  ++      R+
Sbjct: 395 ERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVILDIRPDRQ 454

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +M SAT  P +  LA++Y K+ ++V + S +   +    + + +   D           
Sbjct: 455 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFV 514

Query: 242 HGA---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+FC  +      +  L    F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 515 KNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 574

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+    +     A+ 
Sbjct: 575 VATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTREDWGMAKE 634

Query: 358 --RLFREANVSVVWE 370
              + +EA   V  E
Sbjct: 635 LIDILQEAEQEVPDE 649


>gi|94501739|ref|ZP_01308253.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94426139|gb|EAT11133.1| probable ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 449

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 195/368 (52%), Gaps = 11/368 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  + Q I + +   G+   T VQ+  +   L+++D++V A+TGSGKT AF + +  
Sbjct: 2   FQSFS-LDQRILKGIEALGFTKATDVQQQTIPEALKQQDLMVCARTGSGKTAAFVVPMLQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      +P S   AL + PTRELA Q+ ++ + L   TG+   +  GG     +   
Sbjct: 61  HLLTHK---APNSGTRALILVPTRELAKQLLKQCQALAKFTGIQSGMITGGQEFKFQAAL 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +    I++ TPGRL DH++ K   +  ++  +LDEAD MLD+GF +D+  I ++   K 
Sbjct: 118 FRKNPEIIIATPGRLIDHLKQKKDLMEDVEYFILDEADRMLDMGFEEDVLTIANACSGKA 177

Query: 181 RML---MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIV 236
           +       +      +  + K  Q D   + + S   +HS+I+   +L      +   + 
Sbjct: 178 KPQTLLFSATLQQRGLKHVIKQIQNDPEEIVVDSFRGEHSNIEQHYMLADDDKHKQRILT 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     + AI+F +T+    +    L+ H  +V  L G+++Q ER++ +  MR+GR +
Sbjct: 238 WLLSNEEYRQAIIFTNTKEKTEQTYHFLSYHNVEVGYLHGDMTQDERNHVMTQMRNGRFK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NMQ 353
           V +ATDVAARG+D+  ++LVI+ +++ + ++ +HR GRTGRA   G ++ +I     N++
Sbjct: 298 VLVATDVAARGLDIQSIDLVINFDMARSGDDYVHRIGRTGRAEASGSAISLIDHTEWNLK 357

Query: 354 RRAERLFR 361
              ER  R
Sbjct: 358 AAIERYLR 365


>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
 gi|74897154|sp|Q54TJ4|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
           Full=DEAD box protein 27
 gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
          Length = 783

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 130/499 (26%), Positives = 226/499 (45%), Gaps = 34/499 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + + +A+ + G+   T +Q   +   L  KD+L SA TGSGKT AF L +  
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R S   A   L + PTRELA+Q    +E L   + +   + +GG+S   +  +
Sbjct: 251 RLLF---RDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVE 307

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +V+ TPGRL DH+          L+ ++LDEAD +LD+GF+D+I  I++S P  
Sbjct: 308 LRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTN 367

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-- 237
           R+ ++FSAT++  + TLAK   +  +RV + +  +  S ++   V +      +      
Sbjct: 368 RQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILL 427

Query: 238 --ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
               R       I+FC ++  V R   +      +   L G LSQ++R ++LQ  RDG+ 
Sbjct: 428 SLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQV 487

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +A+DVA+RG+D+  ++ VI+  + +N  N +HR GRT RAG  G S   I  N ++ 
Sbjct: 488 NYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKL 547

Query: 356 AERLFREA-------------------NVSVVWEPAPSV--EAIRE---RDAQRILQDPL 391
            + +  +A                    +  + E   S+  E ++E   R A++ L    
Sbjct: 548 LKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAE 607

Query: 392 FLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
            + S      +   V       E  +    +I    +   +++     V+G +      +
Sbjct: 608 KIISNADANVETPKVWYKTKQEEDKSKELWKIENNIVNPGKKLKAPIDVTGVNNVPSIKK 667

Query: 452 AFKVGGGSRDNFKGSSWFS 470
             +         +      
Sbjct: 668 LKQKKDPYYGLSRKQRRHR 686


>gi|302525261|ref|ZP_07277603.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
 gi|302434156|gb|EFL05972.1| ATP-dependent RNA helicase [Streptomyces sp. AA4]
          Length = 613

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 127/370 (34%), Positives = 195/370 (52%), Gaps = 7/370 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +  P+ +  AL+E G      +Q A +   L  +DVL  AQTGSGKT+AFGLA+
Sbjct: 80  VKTFAQLGLPEPLLRALAEAGIDAPFPIQSATIPDALAGRDVLGRAQTGSGKTLAFGLAI 139

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R      P AL + PTRELA+QV   L  L    G+     +GG+S  R+ 
Sbjct: 140 LARLDGGKARPKR---PRALVLVPTRELAMQVADSLTPLAKSLGLWCRTAVGGMSFGRQA 196

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  +++ TPGRL DH+R    ++     + LDEAD+M D+GF   +  I+D +P 
Sbjct: 197 ESLARGVDLLIATPGRLSDHVRQGTASLGDCNFIALDEADQMADMGFMPQVREIMDLTPP 256

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + Y  D V  ++A      + +D+    V+ SD+    +  
Sbjct: 257 GGQRLLFSATLDGDVDKLVRQYLADPVTHSVAPSTASVTTMDHHLFQVSHSDK--QDIIT 314

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V R T+ L E     VAL G  +Q +R+  L   ++G A V 
Sbjct: 315 RIGAREGRTIMFVRTKHHVDRLTERLRESGVHAVALHGGKTQGQRNRVLADFKEGHAAVL 374

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGI + ++ LV+H + +++ ++ LHR+GRT RAG  G+ V ++  + +R   R
Sbjct: 375 VATDVAARGIHVDNISLVLHVDPAADHKDYLHRAGRTARAGASGIVVTLVTHDQRRTVRR 434

Query: 359 LFREANVSVV 368
           +   A V   
Sbjct: 435 MTDRAGVRAE 444


>gi|302811173|ref|XP_002987276.1| hypothetical protein SELMODRAFT_158648 [Selaginella moellendorffii]
 gi|302815051|ref|XP_002989208.1| hypothetical protein SELMODRAFT_235717 [Selaginella moellendorffii]
 gi|300143108|gb|EFJ09802.1| hypothetical protein SELMODRAFT_235717 [Selaginella moellendorffii]
 gi|300144911|gb|EFJ11591.1| hypothetical protein SELMODRAFT_158648 [Selaginella moellendorffii]
          Length = 362

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 164/365 (44%), Gaps = 7/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E+G+   + +QE  +   L   D+L  A+ G+GKT AF +     +          +
Sbjct: 2   GIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAIEKIDPNK------N 55

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A   L + PTRELA+Q  +  + L     +   V  GG S+  +   L    H++VGTPG
Sbjct: 56  AIQVLILVPTRELALQTSQVCKELAKHLKIETMVTTGGTSLKDDIMRLYQPVHLLVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D        +     +V+DEAD++L    +  +E +L   P+ R++L+FSAT    +
Sbjct: 116 RVLDLANKGVCKLKDCSMMVMDEADKLLSPEIQPLVERLLSFLPESRQVLLFSATFPVTV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               + + +    +N+  E             V    + + +  +        +I+FC++
Sbjct: 176 KQFKEKFLRKPYVINLMDELTLKGI-TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +    +  ++ Q  R+      R+G  R  +++D+  RGID+  +
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQAV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +E    +   P  
Sbjct: 295 NVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQ 354

Query: 374 SVEAI 378
             +AI
Sbjct: 355 IDQAI 359


>gi|225432126|ref|XP_002274485.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1864

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   +   G+ + T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 499 TFEATGFPPEILREIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF- 557

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L    R +  + P  + +APTRELA Q+  E       + V  A   GG S + + ++
Sbjct: 558 -ILLRRRRNNVQNGPTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKE 616

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA +VV TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R
Sbjct: 617 LDRGADVVVATPGRLNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 676

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +   + V+VNI S +    +  I     +V+  ++   +  I
Sbjct: 677 QTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQI 736

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F    + G+ SQ ER   L   R G++ + 
Sbjct: 737 LRSQERGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPIL 796

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S     +   + A  
Sbjct: 797 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDCKYAAD 856

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  E
Sbjct: 857 LIKVLEGANQRVPPE 871


>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
 gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
          Length = 403

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 176/365 (48%), Gaps = 3/365 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +  A+ E GY   T +Q   +   L  +D+L SA TG+GKT AF L     L  +
Sbjct: 2   ELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQYL-QD 60

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A   L + PTRELA+QV  +   L   T + +    GGV        L    
Sbjct: 61  FPRRKPGPA-RILILTPTRELAMQVADQARALAKHTKLNIFTITGGVQYQEHADILGKTQ 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL ++I  +  +   ++ +VLDEAD MLD+GF   ++ + +    +++ L+F
Sbjct: 120 DIVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGPTVDRLSNECRWRKQTLLF 179

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT     +     +  KD   ++     R+   I          +    ++  +    A
Sbjct: 180 SATLEGKGVEGFTADLLKDPADIDAEPSRRERKKIAQWYHRADDMNHKLELLKKIITDQA 239

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + +IVF  TR  +      L +       + GE+ Q  R+NA+   RDG   V +ATDVA
Sbjct: 240 ERSIVFLKTRERLGELRTELEKAQIPCAWIQGEMPQDRRNNAIARFRDGTVNVLLATDVA 299

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGIDLPD+  VI+ ++  + +  LHR GRT RAG+KG +V ++  + Q   +R+ R   
Sbjct: 300 ARGIDLPDVSHVINYDMPRSADVYLHRIGRTARAGKKGNAVSLVEAHDQPMLDRVARYVK 359

Query: 365 VSVVW 369
             +  
Sbjct: 360 EDIKE 364


>gi|195499159|ref|XP_002096830.1| bel [Drosophila yakuba]
 gi|194182931|gb|EDW96542.1| bel [Drosophila yakuba]
          Length = 792

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 289 ITSFDDVQLTEIIRNNVALARYDKPTPVQKYAIPIIINGRDLMACAQTGSGKTAAFLVPI 348

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 349 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 408

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 409 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 468

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 469 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 528

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 529 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 588

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 589 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 648

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 649 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 681


>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
          Length = 532

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 12/369 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +S + Y   T +Q ++    +   D++  AQTGSGKT+A+ L     + ++ 
Sbjct: 78  FPNQLNKRISLKAYNRPTPIQASVFPIIMSGHDLIGIAQTGSGKTIAYLLPGLVHIESQR 137

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P+ L + PTRELA+Q+   + +      +  A   GG     +   L     
Sbjct: 138 KK----GGPMMLILVPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMALARDPD 193

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  +  N+ ++  +VLDEAD MLD+GF   +  I     + R+ + FS
Sbjct: 194 IVVATPGRLIDFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQTVFFS 253

Query: 187 ATISPAITTLAKNYQKDAVRVNI---ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT    +  LA +   +                +       L     ++  +  +     
Sbjct: 254 ATWPKTVQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEKQEELLYILEELSN 313

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+         L+EH F  ++L G+ +QQ+R   ++  +  + ++  ATDV
Sbjct: 314 KDKVLIFVETKKDCEDLASYLSEHGFFCMSLHGDKTQQQRDYVMKEFKASKCKLLCATDV 373

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-----QNMQRRAER 358
           A+RG+D+ D+ LVI+ +  +  +N +HR GRTGRAG KG S+ +I        + ++   
Sbjct: 374 ASRGLDVRDISLVINYDFPNQIDNYVHRIGRTGRAGDKGRSITMITLDAMDPRVAKQLVD 433

Query: 359 LFREANVSV 367
           L +++   V
Sbjct: 434 LLKDSEQVV 442


>gi|74142079|dbj|BAE41100.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKELIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 408

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 189/370 (51%), Gaps = 6/370 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     +  A ++ G+   T++QE ++   L  +D+L SA TG+GKT AF L    
Sbjct: 2   TFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P  A   L + PTRELA+QV  +   +   T +V  V  GG++   ++  
Sbjct: 62  FLL-DYPRKQPG-ATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKET 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL +HI  +  +   ++ ++LDEAD MLD+GF   +  I   +  ++
Sbjct: 120 LSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRK 179

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNI 238
           + L+FSAT     + T A +   +   V      ++ + I     L   ++ +   +VNI
Sbjct: 180 QNLLFSATLEGKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQALLVNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+     +A+VF  TR  +      LA    QV  L GE+ Q +R+ A+   ++G   + 
Sbjct: 240 LKQETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P++  VI+ ++    +  +HR GRTGRAG KG ++ ++  +      +
Sbjct: 300 LATDVAARGIDVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEMVTK 359

Query: 359 LFREANVSVV 368
             R     + 
Sbjct: 360 AARYMGEPLK 369


>gi|294141997|ref|YP_003557975.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328466|dbj|BAJ03197.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 430

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 191/378 (50%), Gaps = 7/378 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  ++  ++ +A+ E GY  LT VQ  ++   L   D++  A+TG+GKT +F L L
Sbjct: 1   MK-FDALDLNPLLLQAIDECGYQQLTQVQSEVIPLALSGVDLMACAETGTGKTASFALPL 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL E+           L + PTRELA+QV   +      T +      GG +++ +R
Sbjct: 60  LERLLKEDHESPCLRG---LILTPTRELAIQVAENITRYGQFTSLKTLAVYGGANMNPQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +   GLN+S + ++++DEAD MLD+GF  DIE +      
Sbjct: 117 KALNAGVDILVATPGRLFDFVGQHGLNLSEVTSLIIDEADRMLDMGFVRDIEKVKSLVSS 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +     FSAT S  +  LA+    ++ +    ++ R  + ++    LV    +   +  +
Sbjct: 177 QHLTHFFSATYSDPVKLLAEKM-LNSPQWINVAQTRSAASVEQEIYLVDKRRKAELLSEL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF +T+ S       L+    +     G+ +Q  R+  L+  + G+ RV 
Sbjct: 236 IGRNNWQQVLVFATTKESAEHLKSELSLDGIKCGVFHGDRTQGARNRTLEEFKSGKIRVM 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +  + +   E 
Sbjct: 296 VATDVAARGLDIQALPLVINLELPYGAEDYIHRVGRTGRAGLTGRAISFVCPSDEEMLEE 355

Query: 359 LFREANVSVVWEPAPSVE 376
           +     + +     P  E
Sbjct: 356 IESLIELKLPRIVLPGYE 373


>gi|134095506|ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 gi|133739409|emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 468

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 138/415 (33%), Positives = 208/415 (50%), Gaps = 27/415 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +AL+E GY   T VQ   +   +  +D++VS+QTGSGKT AF L    
Sbjct: 2   TFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFSPASA-----------------------PLALAIAPTRELAVQVGRELEWL 97
               ++++  P                          P  L + PTRELA+QV    +  
Sbjct: 62  KFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDKY 121

Query: 98  YAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
            A    V AV  +GG+   ++ + L     I+V TPGRL DH+    ++ S L+ +VLDE
Sbjct: 122 GAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLDE 181

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD MLD+GF DDIE I+ ++P+ R+ ++FSAT+   + T+AK   KD + + IA    +H
Sbjct: 182 ADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATKH 241

Query: 217 SDIDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            +I      V   S ++  + ++LR      A+VF +T+         L    F   AL 
Sbjct: 242 ENIKQGVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALH 301

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G++ Q  R+  L  +R G+ RV +ATDVAARGID+P +  V + +L   PE+ +HR GRT
Sbjct: 302 GDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGRT 361

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           GRAGR G++V ++        +R+ R     +        E  R   A R    P
Sbjct: 362 GRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPRSNHKP 416


>gi|119582642|gb|EAW62238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
 gi|119582646|gb|EAW62242.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46, isoform CRA_a [Homo
           sapiens]
          Length = 883

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 194/372 (52%), Gaps = 6/372 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAI 378
               P P +E +
Sbjct: 742 GTAVP-PDLEKL 752


>gi|73965227|ref|XP_861717.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 9 [Canis
           familiaris]
          Length = 620

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/385 (28%), Positives = 187/385 (48%), Gaps = 14/385 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 219 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI + E   + +I     +    ++D  ++ ++    +
Sbjct: 279 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 338

Query: 245 K---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 339 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 398

Query: 302 DVAARGI------DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           DVA+RG+      ++ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++
Sbjct: 399 DVASRGLAFYKLVNVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQ 458

Query: 356 AERL---FREANVSVVWEPAPSVEA 377
              L    REAN ++  +    VE 
Sbjct: 459 VSDLISVLREANQAINPKLLQLVED 483


>gi|189205174|ref|XP_001938922.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187986021|gb|EDU51509.1| ATP-dependent RNA helicase dbp2 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 573

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 109/398 (27%), Positives = 183/398 (45%), Gaps = 32/398 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 128 VTTFDEAGFPSYVMNEVKAQGFAKPTAIQAQGWPMALSGRDVVGVAETGSGKTLTYCLPA 187

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + 
Sbjct: 188 IVHINAQ-PLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 247 RDLARGVEVCIATPGRLIDMLEAGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 306

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNA 234
            R+  M+SAT    +  LA +YQKD ++VNI S +   +    + V V        R   
Sbjct: 307 DRQTCMWSATWPKEVRQLAADYQKDWIQVNIGSMDLSANHRIQQIVEVCTEFEKRDRMAK 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 367 HLETIMSDKDNKILIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 426

Query: 295 ARVCIATDVAARGI----------------------DLPDLELVIHAELSSNPENLLHRS 332
           + + +ATDVA+RGI                      D+ ++  V + +  +N E+ +HR 
Sbjct: 427 SPIMVATDVASRGIASRDPIMIAVCSFHQSLTFALQDVRNITHVFNYDYPNNSEDYVHRI 486

Query: 333 GRTGRAGRKGMSVFVIPQN---MQRRAERLFREANVSV 367
           GRTGRAG  G ++ +         R   ++  E+   +
Sbjct: 487 GRTGRAGANGTAITLFTTENSKQARDLVQILTESKQQI 524


>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
 gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
           FS406-22]
          Length = 362

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 204/369 (55%), Gaps = 15/369 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLAL 58
           M   E N+   I  A+  +G+   T +Q  ++   L +K +++  A+TGSGKT AF + L
Sbjct: 1   MNFNELNLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N          A+ + PTRELA+QV  E+E L     + +A   GG +++ + 
Sbjct: 61  IELVNENN-------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L   A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF +D+E IL++  +
Sbjct: 114 KAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNR 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +R+L+FSAT+   I  LAK Y  D   +       + +    ++ +    +    ++  
Sbjct: 173 DKRILLFSATMPREILNLAKKYMGDYSFI-----KAKINANIEQSYIEVNENERFEVLCR 227

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +     +VFC T+        +L +  F+  A+ G+L+Q +R   +++ +  R ++ 
Sbjct: 228 ILKNKDFYGLVFCKTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKIL 287

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KG ++ +I +   ++ + 
Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKY 347

Query: 359 LFREANVSV 367
           + R   + +
Sbjct: 348 IERMTKLKI 356


>gi|260770944|ref|ZP_05879873.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
 gi|260614181|gb|EEX39371.1| ATP-dependent RNA helicase DbpA [Vibrio furnissii CIP 102972]
          Length = 460

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 7/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL +   L  +
Sbjct: 10  NLKPELLSNLDTMGFTHMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLQNLHVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        +L + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QSLVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ ++ I+  +PK+R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKGRIDLSELNTLVLDEADRMLEMGFQEALDAIIAEAPKQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI  +A++  +DA+ + +AS +   S       +     RD A+  +L  H  
Sbjct: 184 FSATYPEAIQEIAQSVTRDALMIKVASTHETSSIRQQFYKVEGTEARDEALATLLLNHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+  V      L    F V+ L G++ Q+ER  AL    +    V +ATDVA
Sbjct: 244 ESAVVFCNTKREVQSVADELHHKGFSVIELHGDMEQRERDQALVQFANKSISVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG +G+++         R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSQGLAISFFSDKEMYRIAQIEEYMD 363

Query: 365 VSVVWEPAPS 374
           + +     P 
Sbjct: 364 MVISPAELPE 373



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 27/107 (25%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D     +   +   G            +  G KQK    
Sbjct: 342 LAISFFSDKEMYRIAQIEEYMDMVISPAELPEPVKGVAPYRSNMVTIQIDGGKKQKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            ++  L     +    IG I +     +V V      +    +   K
Sbjct: 402 DILGALTSDGSLTGDQIGKINLFQMRAYVAVQKSVAKVALDKLSNGK 448


>gi|254508548|ref|ZP_05120665.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
 gi|219548490|gb|EED25498.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 16]
          Length = 433

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +
Sbjct: 16  LHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTS 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PERAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPPIEEYI 375

Query: 364 NVSVV---WEPAPSVEAI 378
             ++    ++P+  +E +
Sbjct: 376 EHTIPVSDYDPSALIEDL 393


>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
 gi|143462316|sp|Q0UK12|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
          Length = 546

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 119/394 (30%), Positives = 190/394 (48%), Gaps = 15/394 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + +A    GY   T +Q   +   L  KD++  A+TGSGKT AF L + 
Sbjct: 115 KTFADLGVREELCDACENLGYKTATPIQTESIPLALAGKDIIGLAETGSGKTAAFVLPIL 174

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +        A   L +APTRELA Q+ ++++ L +   V  A  +GG+ +  +  
Sbjct: 175 QALLDKPQ------AYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAI 228

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V +PGRL DH+      ++ HLK +VLDEAD +LDL F D ++ I    P+
Sbjct: 229 ALSKRPHIIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPR 288

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             R      +   S   +      +        +S ++  S +    +L+    +D  ++
Sbjct: 289 DDRHTYLFSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKDLYLI 348

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +     I+F  T     R   +L    FQ + L G+LSQ  R  AL   +     
Sbjct: 349 HLLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARD 408

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P ++LV++ +L  + E  +HR GRT RAG+ G +V  + Q      
Sbjct: 409 ILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEIF 468

Query: 357 ERLFREANVSVVWEPAPSVE----AIRERDAQRI 386
           +R+       V  E     E    A R  +AQR+
Sbjct: 469 QRIEHALGKQVPEEKVSRDEVMVYAERVGEAQRV 502


>gi|28897677|ref|NP_797282.1| RhlE protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364553|ref|ZP_05777162.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260876480|ref|ZP_05888835.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260895848|ref|ZP_05904344.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|28805890|dbj|BAC59166.1| RhlE [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086771|gb|EFO36466.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092804|gb|EFO42499.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308115381|gb|EFO52921.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|328473340|gb|EGF44188.1| RhlE protein [Vibrio parahaemolyticus 10329]
          Length = 411

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 187/376 (49%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++  GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSAPITDAVTALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVEYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPEDVQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   + IA  +   S+I      V    + + + ++L  +    
Sbjct: 186 ATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLNENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM-------QRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++        + R   L
Sbjct: 306 GIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +      +P P
Sbjct: 366 LERVEIEGFAPRKPVP 381


>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
          Length = 622

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G +   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGNATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|57640241|ref|YP_182719.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
 gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
          Length = 406

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 207/390 (53%), Gaps = 10/390 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +     EA+  +G+   T +Q  ++   L  E D++  ++TGSGKT AFGL +  ++   
Sbjct: 8   LSSASVEAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPILDSID-- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA+QV  EL  L  K  + V    GG  +  + R L+ G 
Sbjct: 66  ----ESIREVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRALEGGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DHI    LN+  ++  VLDEAD MLD+GF++DIE I  ++PK++R+LMF
Sbjct: 122 HIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKRVLMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGA 244
           SAT+   +  LAK Y ++   V ++ +     +++   +      R + +  I       
Sbjct: 182 SATMPMDVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPHRRFDLLTKILSDESNE 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVFC T+A     +  L    F+  AL+G++SQ  R       +  + ++ +ATDVA
Sbjct: 242 FYGIVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKILVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P++  VI+  +  NPE  +HR GRTGR G+KG ++  I     RR   + ++A 
Sbjct: 302 ARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRYITKQAG 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           V V        E I +   +R+ Q+ L  +
Sbjct: 362 VEVKKSEL--SEGIPKEYRERLRQEELEGE 389


>gi|254230204|ref|ZP_04923597.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262392870|ref|YP_003284724.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|151937289|gb|EDN56154.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
 gi|262336464|gb|ACY50259.1| ATP-dependent RNA helicase RhlB [Vibrio sp. Ex25]
          Length = 439

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LKPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L   TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIYNDAEALTESTGLKTALAYGGESYDKQLNKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNTPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + E D+  ++QD
Sbjct: 376 EHTIP---------VSEYDSSALIQD 392


>gi|303312885|ref|XP_003066454.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106116|gb|EER24309.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320031627|gb|EFW13587.1| ATP-dependent RNA helicase HAS1 [Coccidioides posadasii str.
           Silveira]
          Length = 604

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 116/470 (24%), Positives = 213/470 (45%), Gaps = 14/470 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P +  +DVL +A+TGSGKT++F +     L   
Sbjct: 130 NLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEML--S 187

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 188 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGV 247

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 248 NLLIATPGRLLDHLQNTEGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTM 307

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 308 LFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 367

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 368 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLIC 427

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 428 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 487

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            ++A V VV    P+ + +  +   ++++    +L+    D  +      A H    +  
Sbjct: 488 -KDARVPVVEFEFPAKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFD 546

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 +++ +           ++L +   R +  +     G   R   K
Sbjct: 547 VNKLDLVKVAKGFGFPTPPRVDITLGASMSRDKKQTSRRNYGSQPRHAPK 596


>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
 gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
          Length = 615

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 113/383 (29%), Positives = 194/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F     PQ I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 173 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 232

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  F  +  P  L I P+RELA Q    +E+            +   +CIG
Sbjct: 233 IMFSLEQEKRLPFCKSEGPYGLIICPSRELAKQTHTIIEYYCKLLEEEGAPHMRSVLCIG 292

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI 
Sbjct: 293 GMSVKDQMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIR 352

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 353 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEA 412

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 413 KMVYLLECLQKTPPP-VLMFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 471

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           ++G+  V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I  
Sbjct: 472 KEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINK 531

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 532 GCDESVLMDLKALLIEAKQKVPP 554


>gi|195572651|ref|XP_002104309.1| GD18514 [Drosophila simulans]
 gi|194200236|gb|EDX13812.1| GD18514 [Drosophila simulans]
          Length = 713

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 184/375 (49%), Gaps = 8/375 (2%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE +++ G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 291 QCFAEYPDMLGE-ITKMGFPKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIH 349

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E+   Y+  G+      GG   + +  DL
Sbjct: 350 TEYQSTPRGTRGGANVLVLAPTRELALQIEMEVNK-YSFRGMKAVCVYGGGDRNMQISDL 408

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D I    +++S +  +VLDEAD MLD+GF   I  ++      R+
Sbjct: 409 ERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQ 468

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVALSDRDNAIVNI 238
            +M SAT  P +  LA++Y K+ ++V + S +           + +   ++  +     +
Sbjct: 469 TIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQVIKLMEDDMAKFNTITSFV 528

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+FC  +      +  L    F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 529 KNMSDTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRIL 588

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR+G S+    +     A+ 
Sbjct: 589 VATDVASRGLDIEDITHVINYDFPRNIEEYVHRVGRTGRAGRQGTSISFFTREDWGMAKE 648

Query: 358 --RLFREANVSVVWE 370
              + +EA   V  E
Sbjct: 649 LIDILQEAEQEVPDE 663


>gi|152977712|ref|YP_001343341.1| ATP-dependent RNA helicase SrmB [Actinobacillus succinogenes 130Z]
 gi|150839435|gb|ABR73406.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 440

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 108/378 (28%), Positives = 185/378 (48%), Gaps = 6/378 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + +AL+++GY   T++Q+  +   + E+D+L SA TG+GKT AF L    
Sbjct: 5   TFDDFDLAPELLKALAKKGYDRPTAIQQESIPVAMEEQDLLGSAPTGTGKTAAFLLPALQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P  AP  L + PTRELA+QV  +   L   T + +A   GGV+       
Sbjct: 65  HLL-DYPRKKPG-APRILVLTPTRELAMQVAEQAGELAQFTKLSIATITGGVAYQNHGEV 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +VV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  ++
Sbjct: 123 FNKNQDLVVATPGRLLQYIKEENFDCRSVEILIFDEADRMLQMGFGQDAEKIAAETRWRK 182

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT+          +     A      S   +     +     ++  +   +   
Sbjct: 183 QTLLFSATLEGELLQDFADRILDNPAKIAVEPSRRERKKINQWYYHADSVEHKIKLVARF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        I+F   R  V   ++ L +   +   L GE++Q +R+N++  +++G   V 
Sbjct: 243 IAQENVTKGILFVRRREDVRELSETLRKRGIRSTYLEGEMAQTQRNNSIDKLKNGIVTVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V++ +L  + +  LHR GRT RAG+KG +V  +  +  R   +
Sbjct: 303 VATDVAARGIDIDDISHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVENHDYRLLGK 362

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 363 IKRYTGELLKPRIIEGLE 380


>gi|218193167|gb|EEC75594.1| hypothetical protein OsI_12293 [Oryza sativa Indica Group]
          Length = 404

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++
Sbjct: 30  ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     + V  CIGG S+  + 
Sbjct: 90  CQIVN------TAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDEADEML  GF+D I  +    P 
Sbjct: 144 RKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ + SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 204 ELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 264 LYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + +   R   
Sbjct: 324 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILR 383

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 384 DIEQYYSTQIDEMPMNVADLI 404


>gi|21228658|ref|NP_634580.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
 gi|20907159|gb|AAM32252.1| ATP-dependent RNA helicase [Methanosarcina mazei Go1]
          Length = 429

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 200/380 (52%), Gaps = 11/380 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +   + +++ E G+ + T++QE  +   L  +DV+  A TGSGKT++F   +
Sbjct: 28  MNNFKKLGLSNAVLKSIDEHGFESPTAIQEKSIPLILAGEDVIGGAATGSGKTLSFASGI 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                             AL + PTRELA QV   L        + +A   GGV ++ + 
Sbjct: 88  LQN-------SEKGKGIQALILTPTRELAEQVANSLRKFSKYDPLNIASIYGGVGINTQI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L   A +VVGTPGRL DHI    + ++++K +VLDEAD M D+GF+ D+E I+   P+
Sbjct: 141 KEL-KNAEVVVGTPGRLLDHISRNTIKLNNVKTLVLDEADHMFDMGFKVDVEKIIKECPQ 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATI+  I  L++ Y ++ VRV+  S        +     V    + + +V +
Sbjct: 200 NRQTLLFSATITKDIVRLSRKYMENPVRVSTESYIDPQKL-NQVVYKVQDDMKLSLLVYL 258

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +   +VFC+T+ +  +  K L +     VA+ G L+Q ER+  L+    G   V 
Sbjct: 259 LQNEKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQNERTRILEKFHSGNIGVL 318

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVA RG+D+  +  V + ++    +  +HR GRT RAG +G ++ ++ +N       
Sbjct: 319 VCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGTEGKAINILSKNDHANFMS 378

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + ++ +V +  +  P+++ I
Sbjct: 379 VLKDNDVDIKEQALPALKKI 398


>gi|254422154|ref|ZP_05035872.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
 gi|196189643|gb|EDX84607.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
          Length = 469

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 195/411 (47%), Gaps = 35/411 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++     I  A++++GY + T +Q   +   +   DV+ SAQTG+GKT  F L L
Sbjct: 1   MMSFESLGLRTEILRAIADQGYTDPTPIQVQSIPLVIAGHDVMASAQTGTGKTAGFTLPL 60

Query: 59  ASTLLA-----------------------------ENDRFSPASA----PLALAIAPTRE 85
              L                                  + S +        AL + PTRE
Sbjct: 61  LQRLCEGLPLQTSPTRNQTSIRSDASRNGTSRPILRKRKGSVSRGDHRPIRALIVTPTRE 120

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA Q+G  +        V   V  GGV ++ +   L+ G  I++ TPGRL DH+  + ++
Sbjct: 121 LAAQIGENVNAYSKYLPVRSTVIFGGVKINPQISKLRQGVDILIATPGRLLDHVGQRTVD 180

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAV 205
           +S ++ +VLDEAD MLD+GF  DI  IL    ++R+ L+FSAT S  I  LA ++ +   
Sbjct: 181 LSQVEVLVLDEADRMLDMGFIHDIRKILALVSEERQTLLFSATFSKPIKKLADSFLRSPK 240

Query: 206 RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA 265
            + +A +N     +D     V    +   +  I+     +  +VF  T+   +R TK L 
Sbjct: 241 TIEVARQNATADTVDQVVYPVDRVRKSELLSFIIGSRNWQQVLVFTRTKHGANRLTKHLQ 300

Query: 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNP 325
           +      A+ G  SQ  R+ AL   +    RV +ATD+AARG+D+  L  V++ EL +  
Sbjct: 301 KDGLTAAAIHGNKSQGARTRALAAFKARDVRVLVATDIAARGLDIDLLPHVVNFELPNVA 360

Query: 326 ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           E+ +HR GRTGRAG +G +V ++  + +     + R     +  E  P  E
Sbjct: 361 EDYVHRIGRTGRAGNEGQAVSLVCVDEKDLLRGIERLLRRDIPREVIPGYE 411


>gi|148978452|ref|ZP_01814926.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962359|gb|EDK27639.1| ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 436

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 200/386 (51%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   ++ GA
Sbjct: 76  EHEGRKPNQPRAIIMAPTRELAIQIYNDAESLVASTGIKAALAYGGESYDKQLGKIEEGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIKEELFYPSNEHKMALLQTLVEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PERAIIFANTKHKCELVWGHLAADGHRVGLLTGDVPQKKREKILEQFTQGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + DA  +L+D
Sbjct: 367 NLPPIEEYIEHAIPVSDYDASALLED 392


>gi|157960630|ref|YP_001500664.1| ATP-dependent RNA helicase SrmB [Shewanella pealeana ATCC 700345]
 gi|157845630|gb|ABV86129.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 411

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 178/370 (48%), Gaps = 6/370 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + E+L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L     
Sbjct: 6   FEDLQLDPCLLESLKAMGHNKPTTIQQQTIPVAMEQRDILARAPTGTGKTASFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    R+   +    L + PTRELA Q+ R    L    G+   +  GGV    +   L
Sbjct: 66  LIDFPRRYGGRA--RVLILTPTRELASQIHRYASHLATGLGLDTVIITGGVPYGPQEEAL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q    I+V TPGRL +++     N   ++ +++DEAD MLD+GF   +E I   S  +++
Sbjct: 124 QKNVDILVATPGRLMEYLDKGHFNAEEVEVLIIDEADRMLDMGFSAVVESIAIESVGRKQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +      +          A   R      ++ +      + +   +  +L
Sbjct: 184 TMLFSATLEGSDVGRFSHNLLTNPVKLEAEAPRSEKAKIHQWIHLADDKAHKFALLCALL 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    +  IVF  TR SV+    +L +       + G++ Q+ R  AL     G   + +
Sbjct: 244 KQEEVQRTIVFVKTRESVASLEGLLQKEGITCAFMRGDMEQKARFQALGRFTKGEVNILL 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   ++
Sbjct: 304 ATDVAARGIDIDDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDIRVVGKI 363

Query: 360 FREANVSVVW 369
            R     +  
Sbjct: 364 ERYIEQPLKR 373


>gi|307204462|gb|EFN83169.1| ATP-dependent RNA helicase DDX42 [Harpegnathos saltator]
          Length = 770

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 181/369 (49%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +A+ +  +   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 261 FDDALMKAIRKNEFTQPTPIQAQAVPAALNGRDIIGIAKTGSGKTAAFIWPMLVHIMDQR 320

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL+ Q+ +E +       + V  C GG S   + + L++GA 
Sbjct: 321 E-LKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAE 379

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 380 IVVATPGRMIDLVKMKATNLIRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 439

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT    +  LA++   D VR+        ++D+    ++          +         A
Sbjct: 440 ATFKKRVEKLARDVLMDPVRIVQGDVGEANTDVTQHVIMFHNPGGKWNWLLQNLVEFLSA 499

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + + +       L    F V+ L G++ Q ER+  +   +       +ATDVA
Sbjct: 500 GSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDVA 559

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG +  ++ +  +  +  L R  N
Sbjct: 560 ARGLDIPHIKTVINYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFSGHLVR--N 617

Query: 365 VSVVWEPAP 373
           +    +  P
Sbjct: 618 LEGANQEVP 626


>gi|290987403|ref|XP_002676412.1| predicted protein [Naegleria gruberi]
 gi|284090014|gb|EFC43668.1| predicted protein [Naegleria gruberi]
          Length = 407

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 197/384 (51%), Gaps = 10/384 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK---DVLVSAQTGSGKTVAFG 55
           +K F+  N+ + +   +   G+   + +Q+  + P    +   DV+  AQ+G+GKT  F 
Sbjct: 28  VKEFDDMNLKEDLLRGIYSYGFEKPSIIQQRAILPITTSEPPADVIGQAQSGTGKTATFT 87

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           ++L   L    D       P  L +APTRELA Q+ + +  L     V V  C+GG  V 
Sbjct: 88  ISLLQRLNISPD----VIQPQGLVLAPTRELAQQIHKVIMSLGEYMKVKVHACVGGTKVQ 143

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G HI+VGTPGR+   I+   LN++ +K +V+DEADEML  GF+D I  I  +
Sbjct: 144 HDIAILEEGVHIIVGTPGRVFHMIQSGHLNVNSIKMLVIDEADEMLSRGFKDQIYAIFKN 203

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNA 234
            P+  ++ +FSAT+   +  +   + +D +R+ +  E      I    + +     +   
Sbjct: 204 LPQDMQVCLFSATMPTEVLEITDKFMRDPIRILVKKEELTLEGIKQFYISVDREDYKFET 263

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + ++ +       ++FC++R  V +  + L +  F V  + GE+  ++R   +   R   
Sbjct: 264 LCDLYKVLTISQCVIFCNSRKKVEQLAEQLNKKDFTVSCMHGEMDPKDRELIMHEFRTSA 323

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +RV I TD+ ARGID+  + LVI+ +L  + EN LHR GR+GR GRKG+++  + ++  R
Sbjct: 324 SRVLITTDLLARGIDVHHVSLVINFDLPRHKENYLHRIGRSGRYGRKGVAINFVTKDDVR 383

Query: 355 RAERLFREANVSVVWEPAPSVEAI 378
               + +  + S+   P    E I
Sbjct: 384 SLREIEKFYSTSIEECPNNIAELI 407


>gi|160875166|ref|YP_001554482.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160860688|gb|ABX49222.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267360|gb|ADT94213.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 467

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 111/366 (30%), Positives = 183/366 (50%), Gaps = 2/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E GY   T +QE  +    + K++L  AQTG+GKT +F L +   + A+ 
Sbjct: 8   LSDPILRAITELGYSQPTPIQEKAIPVIFKGKNLLAGAQTGTGKTASFVLPILQ-MFADM 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A    AL + PTRELAVQV   +        +      GGV    +++ L  G  
Sbjct: 67  PKI-RAKRVRALILTPTRELAVQVEDNIAKYAKYLPLTSMAMYGGVDAAPQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   +  +VLDEAD MLD+GF +DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMYTQRAIHFDEISVLVLDEADRMLDMGFIEDINKIIERLPTERQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   ++ V + IA ++     ID   + V    +   +  ++     + 
Sbjct: 186 ATLSKQVRFLAKTAVENPVEIEIARDSANAPQIDQWLITVDKDKKSALLSKLITEQAWEQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A+    SQ  R   L   + G+ R  +AT VA+R
Sbjct: 246 ALIFIQTKQGAAKLVSQLEKRGIAAEAIHSGRSQAVREQLLVDFKSGKLRFLVATGVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    ++ +HR GRTGRAG  G ++  + ++  R    + R     
Sbjct: 306 GIDIDALTRVVNYDLPDEADDYIHRIGRTGRAGACGEAISFVSKDDFRNLCAIERRLGHI 365

Query: 367 VVWEPA 372
           +V +  
Sbjct: 366 IVRKEI 371


>gi|229844771|ref|ZP_04464910.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
 gi|229812485|gb|EEP48175.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 6P18H1]
          Length = 415

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTREL+VQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYRHPRALILAPTRELSVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|126739425|ref|ZP_01755118.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
 gi|126719525|gb|EBA16234.1| DEAD/DEAH box helicase-like protein [Roseobacter sp. SK209-2-6]
          Length = 468

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 200/377 (53%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L+  G  + T +Q   +   L  +DVL  AQTG+GKT AFG+ L S +L   
Sbjct: 34  LPKHILTRLANMGLKDPTPIQARAIPHALNGEDVLGLAQTGTGKTAAFGVPLISRMLDYG 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +       L +APTRELA Q+   L+ L   T + V + +GGVS++ +   +  G  
Sbjct: 94  RKPA-GKTVRGLVLAPTRELANQIAETLKALTEGTPMKVGLVVGGVSINPQISRIARGTD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    L++     +VLDEAD+MLDLGF   +  I    P++R+ ++FS
Sbjct: 153 ILVATPGRLLDILDRDALDLGSCDFLVLDEADQMLDLGFIHALRKISALLPEERQTMLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +A +Y K  VR+ +    +  + +      +A +++ + +  +L  H  + 
Sbjct: 213 ATMPKQMNEIANSYLKRPVRIEVTPPGKPAAKVTQSVHFIAKAEKLSLLKELLANHKDER 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  + +  +VL +  F   A+ G  SQ +R  AL   + G  +V +ATDVAAR
Sbjct: 273 TLVFGRTKYGMEKLMRVLEKAGFAAAAIHGNKSQGQRERALAAFKSGEIKVLVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+PD++ V + EL + P+  +HR GRT RAG+ G +V     +     + + +   ++
Sbjct: 333 GLDIPDVKFVYNYELPNVPDAYVHRIGRTARAGKDGEAVAFCAPDEMEELKAIQKVMKIT 392

Query: 367 V------VWEPAPSVEA 377
           +       WE  P   A
Sbjct: 393 IPTASGRPWEAMPDPAA 409


>gi|149196524|ref|ZP_01873578.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149140204|gb|EDM28603.1| DEAD/DEAH box helicase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 412

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 200/380 (52%), Gaps = 5/380 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N P  +  A+    +   T +Q   +      KD+L  +QTG+GKT+AF   L  
Sbjct: 2   SFEQLNFPDYLSRAVDNLNFSEATDIQAKAIPLIQEGKDLLAESQTGTGKTLAFSFPLIE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRER 118
            +     +     + L L + PTRELA+QV +        +   +  A  IGG ++  + 
Sbjct: 62  RINTLPPK-KKKISILGLVLVPTRELALQVEKAFTNYAEFSLRPIKTATLIGGENIDGQI 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +++ TPGR+ + I    + +  L+ ++LDEAD+MLDLGF D+++ +L++ PK
Sbjct: 121 RKLRMGLDVLIATPGRIIELINLGEVRLVELEMLILDEADKMLDLGFADELKELLEALPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT+   +  LA+ +   AV + I+ +     +I+ R + V  + R   +  +
Sbjct: 181 KRQNLLFSATLPQKVQQLAEEFLNAAVELRISRDQITGDNIEQRVIEVDANLRRQVLQKL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +    K+ I+F S++ S       L +   Q     G+L+Q ER   L+  ++    + 
Sbjct: 241 FKDEQWKHTIIFVSSKRSAFNLANKLKKAGIQAQDFHGDLTQDERIKVLKRFQNKDFPIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG+KG+++  I    +   + 
Sbjct: 301 IATDIAARGIDISKLSHVINYDLPRSPMDYVHRIGRTGRAGQKGVAISFINPATEDHFKT 360

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + ++A + +  E     + I
Sbjct: 361 IQKQAGIKLEKERIEGFDQI 380


>gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 458

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 181/365 (49%), Gaps = 4/365 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  A++ +GY   T +Q   +   L + D+L  AQTG+GKT AF L L  
Sbjct: 2   SFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+    +      +L + PTRELA QV   +E    +  +      GGV +  +   
Sbjct: 62  RLAAKQS--TKVQGVRSLIVTPTRELAAQVAISVEIYSTQLNIRSFAVYGGVRIEPQIAQ 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  +++ TPGRL D    + L+  +L+ +V DEAD MLDLGF DD++ I    P KR
Sbjct: 120 LQEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRMLDLGFIDDVKRIQSLLPVKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I   A+        + +++ N     +      +  + +  A++ +++
Sbjct: 180 QTLLFSATFSKQIKHFAREMLNAPKTIEVSAVNSTVDLVAQTFHPIEQARKSAALIQLIQ 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     +VF  T+ +       L +      ++    +Q  R+ AL   + G  +V +A
Sbjct: 240 QHRWSQTLVFIRTKRTADALVTELEDAGIAAASIHANRTQHARTQALNAFKAGEIQVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  L  V++ +L   PE+ +HR GRTGRAG  G ++ +   +   + + L 
Sbjct: 300 TDIAARGIDVSQLPCVVNYDLPYVPEDYVHRIGRTGRAGNTGTAISLFSPDEISQLQSLE 359

Query: 361 REANV 365
           R  + 
Sbjct: 360 RYLDQ 364


>gi|67477952|ref|XP_654408.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56471449|gb|EAL49018.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 432

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 207/385 (53%), Gaps = 12/385 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+++   P+V+ + +   GY   T +QE  +   L++KD++  AQTGSGKT +F L +
Sbjct: 9   KTFKDLGLIPEVL-KVVEYLGYKKPTRIQENSIPVALQKKDIIGIAQTGSGKTASFLLPM 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              LL   ++         + I PTRELA QV   ++ +     G+   + +GG+ V ++
Sbjct: 68  VQHLLNVKEK---NRGFYCIIIEPTRELAAQVVEVIDEMGKALPGLTSCLLVGGMDVMKQ 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
              L     ++VGTPGR+  HI+       +I  +K +V+DEAD++L++ F ++I+++++
Sbjct: 125 SVQLAKRPQVIVGTPGRIVYHIKNTKGVEESIEKVKFLVIDEADKLLEMDFANEIDYLIE 184

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDN 233
             PK+R  ++FSAT+S  +  L +      V++    +  Q  D        +    RD 
Sbjct: 185 KLPKQRTTMLFSATMSTKVEKLQRASLTHPVKIKEEEQKYQTVDTLRQEYCFIPFKYRDG 244

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +++IL+    K  I+F    +  ++   +L +  +  + L G++SQQ+R  AL+  + G
Sbjct: 245 YLISILKETEGKTIIIFTMKCSGCTKLVMMLRQMGYAAIPLHGKMSQQKRLIALEKFKSG 304

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P++++VI+ +    P++ +HR GRT RAG+ G ++ ++ Q   
Sbjct: 305 KRGILVATDVASRGLDIPNVDIVINYDCPLEPKDYVHRVGRTARAGKSGYAITLVTQYSI 364

Query: 354 RRAERLFREANVSVVWEPAPSVEAI 378
              +R+       +        EAI
Sbjct: 365 ELYQRIETMIEKKLNEYKVNEKEAI 389


>gi|255635856|gb|ACU18275.1| unknown [Glycine max]
          Length = 413

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 190/371 (51%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQDNLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----VTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ ++    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKFYNV 400

Query: 366 SVVWEPAPSVE 376
            +   P+   E
Sbjct: 401 IIEELPSNVAE 411


>gi|212704221|ref|ZP_03312349.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
 gi|212672425|gb|EEB32908.1| hypothetical protein DESPIG_02276 [Desulfovibrio piger ATCC 29098]
          Length = 578

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 200/377 (53%), Gaps = 7/377 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
             E +P+ I  A    G+ +L  VQ   L   L  +D++V ++TGSGKT  + L L   L
Sbjct: 56  TLETLPETIAAACGRAGWTSLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPLVPRL 115

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E        A  AL + PTRELAVQV  E   L+  TG+      GGV   ++   L+
Sbjct: 116 DPE------LHAVQALILVPTRELAVQVEHEARTLFEGTGIRPVAVYGGVGYKKQMDALR 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GA +VVGTPGR+ DH+  + L++  L  +V DEAD ML +GF  D++ +    P++R  
Sbjct: 170 DGAQLVVGTPGRVLDHLLRRTLSLEDLDVLVFDEADRMLSIGFYPDMKEVQRYLPRRRIH 229

Query: 183 L-MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT  P +  LA  +  +   ++++ +    +++ +        D+D  +V +L  
Sbjct: 230 TSMFSATYPPHVLKLAGEFLTEPSMLSLSQKEVHVAEVQHLFCQSRPMDKDRVLVRLLET 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +AI+FC+T+A+V   T VL    +    LS +LSQ  R   L  +R G  +  +AT
Sbjct: 290 ENPASAIIFCNTKANVHYITGVLQGFGYNADELSADLSQARREAVLDKIRQGSLQYLVAT 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+P L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   ER+ R
Sbjct: 350 DVAARGIDIPALSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDIMQRMELERIAR 409

Query: 362 EANVSVVWEPAPSVEAI 378
              +++   PAP+ E +
Sbjct: 410 HYKIALREIPAPTDEDV 426


>gi|229845944|ref|ZP_04466056.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
 gi|229810948|gb|EEP46665.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 7P49H1]
          Length = 415

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 196/387 (50%), Gaps = 11/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL  
Sbjct: 15  SLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTH 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G 
Sbjct: 75  QDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRML 183
            I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ R  +
Sbjct: 135 DILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTM 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++    
Sbjct: 195 LFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEW 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDV
Sbjct: 255 PERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +    
Sbjct: 315 AARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYI 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + + + +L+ P
Sbjct: 375 GHSIP---------VSQYETEALLELP 392


>gi|149197292|ref|ZP_01874344.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
 gi|149139838|gb|EDM28239.1| ATP-dependent RNA helicase, specific for 23S rRNA [Lentisphaera
           araneosa HTCC2155]
          Length = 462

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 214/385 (55%), Gaps = 10/385 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P  + + + ++  GY  +T +QE  L   L  KD++  A+TG+GKT AFGL + 
Sbjct: 4   KDFASLPLSEDLIKNVASLGYEEMTEIQELSLPAILDGKDLIAQAKTGTGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S L+ ++ R         L + PTREL  QV + +  L      +  +   GG+    + 
Sbjct: 64  SKLVLDDYRI------QVLILCPTRELCEQVSKAIRDLARMMPNIKLLSLGGGMPFRPQM 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + + +GAHIVVGTPGR+  H+    L++ H++ +VLDEAD MLD+GF+D+I+ I+D + K
Sbjct: 118 KSVAHGAHIVVGTPGRILKHLNKSSLSLDHVRTLVLDEADRMLDMGFQDEIDAIIDQTNK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVN 237
           +R+ L+FSAT    I T+AK   KD +R+ + S+  + S I+     + + S R   +  
Sbjct: 178 QRQTLLFSATYPKKIATIAKRVMKDPLRIELDSQVHEESTIEQHFYKVTSESQRLLGLQL 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L    +++A+VFC+T+       K L++  F  +AL G+L Q++R   L    +    V
Sbjct: 238 LLDKFKSESAVVFCNTKQEAKDICKDLSKVGFSTLALHGDLEQKDRQENLVRFANKSVAV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  ++LVI+  +S + E  +HR GRTGRAG+ G++  +  Q    +  
Sbjct: 298 LVATDVAARGLDIDSIDLVINYHISRDFEVHVHRIGRTGRAGKNGIACSLHSQKEAHKIS 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERD 382
            L       +  E  P    ++E  
Sbjct: 358 LLQEFLGQEIESETLPDRSVLKELK 382



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%)

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +            S   +  G KQK  A  L+  L    G+    +G + +    ++V
Sbjct: 373 PDRSVLKELKYRPQMSCLKILFGKKQKLRAGNLLGALTGEKGLKGDQVGKMHIFDYYSYV 432

Query: 512 EVSADGVDLLRRTVKLDK 529
            +    V+   + ++ DK
Sbjct: 433 AIERQSVNHALKILRDDK 450


>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
 gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Thermobifida fusca YX]
          Length = 503

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 185/374 (49%), Gaps = 7/374 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     I +AL   G V    +Q   L   L   D++  A+TG+GKT AFGL L 
Sbjct: 18  TTFRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQARTGTGKTFAFGLPLL 77

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +      A  P AL + PTRELA+QV  +L     +  V +A   GG +   +  
Sbjct: 78  QRVHTQPGS---AKRPRALVVVPTRELAIQVAADLATASKRIDVRIATVYGGRAYEPQIS 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVVGTPGRL D ++ + L +S + A+VLDEAD+MLDLGF  DIE IL  +P +
Sbjct: 135 ALRKGVDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKMLDLGFLPDIERILAKTPDQ 194

Query: 180 RRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ ++FSAT+   I   +     +   +R      +     +          D+   +  
Sbjct: 195 RQTMLFSATMPSEIVALSRKYLRRPTHIRAEDDPLDTGSGQVTQHVFRTHPLDKLEMLAR 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+       +VFC T+      +  L    F   A+ G+L Q +R  AL+  R+G+  V
Sbjct: 255 LLQARNRGLTMVFCQTKRECHHVSTELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  V++ E   + +   HR GRTGRAGR G +V  I      R +
Sbjct: 315 LVATDVAARGIDVDDVTHVVNYECPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQELLRWK 374

Query: 358 RLFREANVSVVWEP 371
            + R   +     P
Sbjct: 375 LINRALGLPFADPP 388


>gi|324502659|gb|ADY41168.1| ATP-dependent RNA helicase cgh-1 [Ascaris suum]
          Length = 434

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 172/370 (46%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QEA +   L  +D+L  A+ G+GKT A+ +     
Sbjct: 39  FEDFCLKRDLLMGIFEKGWERPSPIQEASIAIALSGQDILARAKNGTGKTGAYCIPCIEK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E  +        AL I PTRELA+Q  +    L     + V V  GG  +  +   L
Sbjct: 99  IDPEVKKI------QALIIVPTRELALQTSQVCVELSKHLNLKVMVTTGGTDLRDDIMRL 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VV TPGR+ D I  +  ++S    +VLDEAD++L   F+D ++ ++   P +R+
Sbjct: 153 NGVVHLVVATPGRVFDLIDKRVADMSRCATLVLDEADKLLSQDFQDILDRVIKFLPPERQ 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    + T  +N+      +N+  E             V    + + +  + R 
Sbjct: 213 IMLYSATFPHTVATFMQNHMNHPYEINLMDELTLLGI-TQFYAYVQEKQKVHCLNTLFRK 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +   ++Q  R+      R G  R  + +
Sbjct: 272 LQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSRMAQNHRNRVFHDFRRGSCRNLVCS 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R   
Sbjct: 332 DLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGIAINLITYEDRFNLRRTEA 391

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 392 ELRTHIAPIP 401


>gi|237815476|ref|ZP_04594474.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
 gi|237790313|gb|EEP64523.1| DEAD-box ATP dependent DNA helicase [Brucella abortus str. 2308 A]
          Length = 545

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 133/452 (29%), Positives = 215/452 (47%), Gaps = 20/452 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 111 VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 170

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 171 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 229

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 230 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 289

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 290 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 349

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 350 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 409

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 410 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 469

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGL 428
            + AP           ++   P+         K            E   A   +  R   
Sbjct: 470 IKDAPV----------KLAPAPVA--------KGPAPQGQRTEQAESRKAPAHKHRRPAQ 511

Query: 429 CAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            A E+    +  S  +      R F+  GG R
Sbjct: 512 KAGEQHRAGAHASAGEAAPKPKRPFRSNGGQR 543


>gi|170725054|ref|YP_001759080.1| ATP-dependent RNA helicase DbpA [Shewanella woodyi ATCC 51908]
 gi|169810401|gb|ACA84985.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 469

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 199/368 (54%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  + 
Sbjct: 19  LKPELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLNVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 79  FRI------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+  + L++  +  +VLDEAD ML++GF  D+++I+   P++R+ L+F
Sbjct: 133 HIIVGTPGRIIDHLSRERLSLEDVNTLVLDEADRMLEMGFLPDLDYIMAQMPRERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+    + V V + S +  ++   +   L +  DR  A+  +L  H  +
Sbjct: 193 SATFPKQIQKIAEEIMYEPVMVKVTSTHDSNTIDQHFYELESNKDRQKALRLLLLQHRPE 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 253 SAVVFCNTKRETKDVAATLANDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++V++ E + + E  +HR GRTGRAG KG +          + + L    + 
Sbjct: 313 RGLDIEALDMVVNYEFAYDTEVHIHRIGRTGRAGSKGAAYTFYNYEDDYKVKLLEEYLDR 372

Query: 366 SVVWEPAP 373
            +  E  P
Sbjct: 373 EITSEVLP 380



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L    GI    +G I++    ++V V           +
Sbjct: 394 MVTLQIDGGKKNKLRPGDILGGLTGEDGIQGSEVGKIKITDFRSYVAVDRKVAKRALHKI 453

Query: 526 KLDK 529
              K
Sbjct: 454 TNGK 457


>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
          Length = 422

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 194/384 (50%), Gaps = 8/384 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE   +   +  AL + G+   TS+Q +++   +  +D+L SA TG+GKT AF L  A 
Sbjct: 1   MFEQLELHADLCNALGDMGFTAPTSIQSSVIPKAMEGRDILASAPTGTGKTAAFLLPAAQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL     +    A   L ++PTRELA+Q       +   T +V  V  GG++   +R  
Sbjct: 61  FLLDFPREYH--GATRILILSPTRELAIQTYEHALEITQHTNIVCGVITGGINYGTDRDT 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL +HI  +  +   ++ ++LDEAD MLD+GFR  +  I   +  ++
Sbjct: 119 LAKNLDILVATPGRLFEHIEKESFDCRDIEVMILDEADRMLDMGFRSIVNQIASEARWRK 178

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           + ++FSAT   P I   +K+   +   + +    ++ + I     L   +     ++  +
Sbjct: 179 QSMLFSATLEGPGIAQFSKDLLVNPESITVDPSRKEKAKIHQWYHLADDASHKYQLLKHI 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A++AIVF  TR  + +    LA     V  L GE+ Q +R+ A+   ++G  ++ +
Sbjct: 239 LSEQAESAIVFVKTRERLQQLKDRLASDDIDVCWLQGEMPQDKRNQAMSRFKNGEVKILL 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++    +  LHR GRTGRAG KG ++ ++  +      R+
Sbjct: 299 ATDVAARGIDVDDISHVINFDMPRTSDVYLHRIGRTGRAGAKGTAISIVEAHDFAMLGRI 358

Query: 360 FREANVSVVWEPAPSVEAIRERDA 383
            R     +       ++ +R +  
Sbjct: 359 ARYIKEVIKPRV---IDELRPKHK 379


>gi|91783626|ref|YP_558832.1| putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
 gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
           LB400]
          Length = 523

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 188/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +  Y   T VQ   +   L  +DV+ +AQTG+GKT  F L L   L+     
Sbjct: 52  DPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 111

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 112 VSSNRA-RVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMKLRKGVDVL 170

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   + +  ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 171 VATPGRLLDLNRQNAVQLDQVQTLVLDEADRMLDLGFARELNAVFAALPVRRQTLLFSAT 230

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  +A    +D V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 231 FTDDIRAMAAGILRDPVNISVSPPNATASKIRQWVVTVDKKNKPDLFMHLVAGNNWRHAL 290

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L    + V  + G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 291 VFVKTRNGVDYLAAMLDAAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVATDVAARGL 350

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 351 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLR 410

Query: 369 WEPAPSVEA 377
            E  P  EA
Sbjct: 411 REEEPGFEA 419


>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661035|sp|Q6FJG1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
 gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
          Length = 399

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 104/380 (27%), Positives = 190/380 (50%), Gaps = 12/380 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + +   +   G+   +++Q   +   +  KDV+  AQ+G+GKT  F + +  
Sbjct: 24  TFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERR 119
            +  +           AL ++PTRELA Q+G+ +  L     V   A+  G       ++
Sbjct: 84  AIDLKKHD------LQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKK 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSP 177
             ++G  ++ GTPGR+ D I+ + +   H++ +VLDEADE+L     F+  I  I    P
Sbjct: 138 IQKHGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLP 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIV 236
           +  ++++ SAT+SP I  + K +  D V++ +  +      I      +     + + + 
Sbjct: 198 RTSQVVVVSATMSPEILEITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLC 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +I         ++FC+++  V      L +  F V+++ G++ Q ER   +   R G++R
Sbjct: 258 DIYDSLTITQCVIFCNSKKKVDWLAHKLKQSNFAVISMHGDMKQDERDRVMNEFRTGQSR 317

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I+TDV ARGID+  + LVI+ +L    EN +HR GR+GR GRKG+++  + +    R 
Sbjct: 318 VLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRM 377

Query: 357 ERLFREANVSVVWEPAPSVE 376
           + + +   + V   PA   E
Sbjct: 378 KEIEKYYKIKVKPMPADLSE 397


>gi|221119958|ref|XP_002163544.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
           [Hydra magnipapillata]
          Length = 745

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 105/396 (26%), Positives = 185/396 (46%), Gaps = 9/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+ I   +    +   + +Q       L   D +  AQTG+GKT+AF L     + 
Sbjct: 277 FYDYPE-ILSTIKSNNFTEPSPIQCQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHID 335

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L ++PTRELA Q+  E++  + + G+      GG     +   ++ 
Sbjct: 336 GQPIPRDKRGGPSCLVLSPTRELAQQIEMEVKKFHYR-GIRSVCIYGGGDRSAQINLVRQ 394

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++GTPGRL D +     ++  +  +VLDEAD MLD+GF  +I+ IL      R+ +
Sbjct: 395 GVEIIIGTPGRLNDLLMNGFFSVKSVTYLVLDEADRMLDMGFEPEIKKILLDIRPDRQTI 454

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT  P +  +A  Y +D +R+N+ S + +    +      +   ++ + +++ +   
Sbjct: 455 MTSATWPPGVQRMADKYLRDPIRINVGSLDLQACHSVSQLVEFIEQHEKQDRVMDFISAM 514

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVV---ALSGELSQQERSNALQMMRDGRARVCI 299
                ++    R   +             +    + G+  Q +R  AL+ M+ G ARV I
Sbjct: 515 APDGKLIIFVGRKVTADDISSNLAMKGTNIGIQCIHGDRDQSDREQALEDMKTGAARVLI 574

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER- 358
           ATDVA+RG+D+ DL  V++ +   + E+ +HR GRTGRAGR G ++  + +       + 
Sbjct: 575 ATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGCALTFVTREDWMHVAKL 634

Query: 359 --LFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +  EA   V  E     E  ++   +R  +   +
Sbjct: 635 IPIMEEAGQEVPEELIEMAERWKKTQDRRDEEKSAY 670


>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
 gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
          Length = 453

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 190/386 (49%), Gaps = 16/386 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   +   +   GYV  T +Q   +   +  +DVL  AQTG+GKT AFGL +  
Sbjct: 3   FKQF-NLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPMLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ E            L +APTRELA Q+   L  +  +T +      GGV+++ + + 
Sbjct: 62  RLVQEE-----RGHVRGLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DHI    +++S ++ +VLDEAD+M D+GF  D+  IL + P KR
Sbjct: 117 LKEGAEIVVACPGRLLDHISQGTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+   I  LA +           S     + + +    V    +   +  +L+
Sbjct: 177 QNLMFSATMPDDIRRLA-HEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++   PE   HR GRTGRA + G +  ++          + 
Sbjct: 296 TDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRAIE 355

Query: 361 REANVSVVWE---------PAPSVEA 377
           +     +            PAP  +A
Sbjct: 356 KVLGTKIERRRFEGFDYAVPAPQKDA 381


>gi|218676922|ref|YP_002395741.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus LGP32]
 gi|218325190|emb|CAV27104.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  + 
Sbjct: 20  LKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKR 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GA
Sbjct: 80  FRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGA 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+F
Sbjct: 134 HILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A     +   V + S +   S   +   +     RD+A+  +L +H  +
Sbjct: 194 SATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 254 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++    +    R  ++    ++
Sbjct: 314 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQIDEYMDM 373

Query: 366 SVVWEPAPS 374
            +     P+
Sbjct: 374 PIEPSQLPA 382



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G K K  A  ++  L    GI+ +S+G I +     +V V         
Sbjct: 390 YSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVGKINLFAMRAYVAVERSMAKKAL 449

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 450 GKIESGK 456


>gi|86145730|ref|ZP_01064059.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
 gi|85836429|gb|EAQ54558.1| ATP-dependent RNA helicase DbpA [Vibrio sp. MED222]
          Length = 459

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 203/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  + 
Sbjct: 11  LKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GA
Sbjct: 71  FRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+F
Sbjct: 125 HILVGTPGRILDHLERDRIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A     +   V + S +   S   +   +     RD+A+  +L +H  +
Sbjct: 185 SATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++    +    R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQIDEYMDM 364

Query: 366 SVVWEPAPS 374
            +     P+
Sbjct: 365 PIEPSQLPA 373



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G K K  A  ++  L    GI+ +S+G I +     +V V         
Sbjct: 381 YSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVGKINLFAMRAYVAVERSMAKKAL 440

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 441 GKIESGK 447


>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
 gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
          Length = 413

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 183/387 (47%), Gaps = 6/387 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     +  AL E  Y   T VQ   +   L  KD+L SA TG+GK+ AF L  
Sbjct: 2   IKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPA 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P  A   L + PTRELA+QV  E   L   T   V    GG+S     
Sbjct: 62  LQHLD-DFPRREPGPA-RILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHA 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     IVV TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      
Sbjct: 120 DILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRW 179

Query: 179 KRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +++  +FSAT     +     +   +   +N     R+   I               ++ 
Sbjct: 180 RKQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLK 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A+ +IVF  TR  ++     L         + GE++Q+ R+NA+   RDG   V
Sbjct: 240 SILKEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAIARFRDGTVNV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLPD+  VI+ ++    +  LHR GRT RAG+KG +V +I  + Q   E
Sbjct: 300 LIATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMME 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
           R+ R      + +    +E ++ +  +
Sbjct: 360 RVGRYIKEDEIIKER-FIEGLKPKHKK 385


>gi|154270258|ref|XP_001535985.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
 gi|150410056|gb|EDN05444.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
          Length = 457

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 93/358 (25%), Positives = 163/358 (45%), Gaps = 7/358 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +        +N +     
Sbjct: 3   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKNSK----- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L    HI+VGTPG
Sbjct: 58  -TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEAVHIIVGTPG 116

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D       ++S     V+DEAD++L   F   IE +L   PK R++++FSAT    +
Sbjct: 117 RILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPMIV 176

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +    + ++   +N+  E             V    + + +  +        +I+FC++
Sbjct: 177 KSFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNS 235

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +       ++ Q  R+      R+G  R  + +D+  RGID+  +
Sbjct: 236 TNRVELLAKKITELGYSCFYSHAKMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 295

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++ +E    +   P
Sbjct: 296 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWEDRYNLYKIEQELGTEIQPIP 353


>gi|1170509|sp|P41378|IF4A_WHEAT RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
           AltName: Full=ATP-dependent RNA helicase eIF4A
          Length = 414

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 191/374 (51%), Gaps = 9/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN  HR GR+GR GRKG+++  + +  +R    
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFD 394

Query: 359 LFREANVSVVWEPA 372
           + +  NV +   PA
Sbjct: 395 IQKFYNVVIEELPA 408


>gi|117620545|ref|YP_858124.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561952|gb|ABK38900.1| ATP-dependent RNA helicase SrmB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 407

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 197/387 (50%), Gaps = 9/387 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  +   +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT AF L   
Sbjct: 3   QSFDDFDLNPALNRALAEMGFSRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFLLPAL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P    + L + PTRELA+QV    + L A T + +   IGGVS   +  
Sbjct: 63  QHLL-DFPRRKPGPCRM-LVLTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLP 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVV TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I++ +  +
Sbjct: 121 ALTKTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVEEARYR 180

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
           +  ++FSAT     +   A +  K+ V ++      +   I     L   +  +   +V+
Sbjct: 181 KHTMLFSATLEGAGLEKFANDILKEPVELHAEPPRSERRPITQWVHLADDAAHKLALLVH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    + AI+F  TR  ++  +  L         + GE+ Q +R  +++   +G    
Sbjct: 241 ILKDPETQKAIIFVKTRERLAELSGQLQAAGVSCAWIRGEMEQSKRIESIRKFHEGEVPF 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++  +      
Sbjct: 301 LIATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVA 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
           ++ R     +       ++ +R +  +
Sbjct: 361 KIERYTEERLKRRV---IDELRPKHKE 384


>gi|71659539|ref|XP_821491.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70886872|gb|EAN99640.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 113/359 (31%), Positives = 185/359 (51%), Gaps = 7/359 (1%)

Query: 1   MKIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           +  F+ +    P  + + L+ +G+ + T+VQ       LR +D++  A+TGSGKT+AF +
Sbjct: 109 LSNFDQLSAFVPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMV 168

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              + +  +         P+ + +APTRELA Q+ +E + +     +      GG     
Sbjct: 169 PALAHIAMQEP-LRTGDGPMVVVLAPTRELAQQIEQETKKVL-PHDLRCGCVYGGAPKGP 226

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NG HI+V TPGRL D +  K +N   +  +VLDEAD MLD+GF   +  I    
Sbjct: 227 QLGILRNGVHILVATPGRLIDFLEIKRVNFFRVTYLVLDEADRMLDMGFEPQVRAICGQI 286

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAI 235
              R+ LMFSAT    I  LA  +QKD +R+N+ S     + D+    +L     +   +
Sbjct: 287 RPDRQTLMFSATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMEEL 346

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L  H  +  ++FC T+ +       L    +  +A+ G+  Q++R   L+  R    
Sbjct: 347 KKLLANHRNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPR 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
              +ATDVAARG+D+ +LE VI+ +     ++ +HR GRTGRAG KG +  +I +  Q+
Sbjct: 407 LCLVATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREQQ 465


>gi|326928431|ref|XP_003210383.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
           [Meleagris gallopavo]
          Length = 604

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 162 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 221

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    +E+            +  A+CIG
Sbjct: 222 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 281

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 282 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 341

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 342 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEA 401

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 402 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 460

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           RDG+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 461 RDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 520

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 521 ACDESVLMDLKALLLEAKQKVPP 543


>gi|251793198|ref|YP_003007926.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534593|gb|ACS97839.1| ATP-dependent RNA helicase RhlB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 433

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 200/390 (51%), Gaps = 14/390 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P   ++ +AL+ +G+   T +Q   L   L+ KDV   AQTG+GKT+AF  AL   
Sbjct: 25  FADLPLHPLVLQALTTKGFDFCTPIQALSLPVTLQGKDVAGQAQTGTGKTIAFLTALFHH 84

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL      +  + P AL +APTRELAVQ+  + +     T    A+  GG    ++ + +
Sbjct: 85  LLTH-PTETDKNQPRALVLAPTRELAVQIEHDAQIFLKTTQFKTALAYGGDGYDKQLKAI 143

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           +NG  +++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      SP++
Sbjct: 144 ENGVDVLIGTTGRVIDYVKQGIIRLDRIQVVVLDEADRMFDLGFIRDIRYLLRKCPSPQQ 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   V IA E +    I       +  D+   ++ +L
Sbjct: 204 RLTMLFSATLSYKVRELAFEDMNDPEYVEIAPEQKTGRQIKEELFYPSNQDKIRLLLTLL 263

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 264 EEEWPERCIIFANTKHQCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGELDILV 323

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 324 ATDVAARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAI 383

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
                 S+          + + D   +LQD
Sbjct: 384 EEYIGHSIP---------VSQYDPNALLQD 404


>gi|223998424|ref|XP_002288885.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975993|gb|EED94321.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 518

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 218/499 (43%), Gaps = 20/499 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++P   +   ALS  G+  +T +Q   +   L  KD++ +A+TGSGKT+AF L + 
Sbjct: 20  NTFASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGAAKTGSGKTLAFLLPVV 79

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRE 117
             L   N +F   +   A+ I+PTRELA+Q+    +      K      + IGG +   E
Sbjct: 80  ELL--HNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTSGKHHQTYGLIIGGANRRTE 137

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L  G +IV+ TPGRL DH++        +L A V+DEAD +L+ GF DD+  I+ + 
Sbjct: 138 AERLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRSIIKAL 197

Query: 177 PKKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           PK+R+ ++FSAT +  +     T         V V   +     + ++   V V    R 
Sbjct: 198 PKQRQTMLFSATQTKKVEDLARTAIDPKSAVYVEVPNETNLATAAGLEQGYVTVPSDQRF 257

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +   L+ +  K  +VF S+  SV   +++L      V+ + G   QQ+R+        
Sbjct: 258 LLLFTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCK 317

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQN 351
                 + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  + KG ++  +   
Sbjct: 318 QTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLTPE 377

Query: 352 MQRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                 R  + A V++     P  + A  +   QR+++   +L+    D  +   +    
Sbjct: 378 ETGFL-RYLKAAKVTLNEYEFPMTKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYTS 436

Query: 411 HDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           H    I    +     + RA          ++      + R  +     G G        
Sbjct: 437 HSLRDIFDVHSLDLAAVGRAFGFTAPPRVDLAFSVKGPKARRHNGQVMNGKGKNGKLANG 496

Query: 467 SWFSLS--VGSKQKAEARW 483
             FS S   G K+  + R 
Sbjct: 497 HSFSASNPYGRKESGDKRQ 515


>gi|195572505|ref|XP_002104236.1| GD20854 [Drosophila simulans]
 gi|194200163|gb|EDX13739.1| GD20854 [Drosophila simulans]
          Length = 784

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 187/384 (48%), Gaps = 21/384 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 294 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +     ++     PL L +APTRELA Q+  E +    ++ +  AV  GG +   + 
Sbjct: 354 LNQMYELGHQY-----PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQM 408

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I  I++    
Sbjct: 409 RELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNM 468

Query: 179 KRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                    MFSAT    I  LA ++  + + + +        +I    + V   D+ + 
Sbjct: 469 PPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSY 528

Query: 235 IVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +++          Y      ++F  T+       + L +    V ++ G+ +Q+ER  AL
Sbjct: 529 LLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEAL 588

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G++   
Sbjct: 589 RCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSF 648

Query: 348 IPQ---NMQRRAERLFREANVSVV 368
             +   N+      L  E    + 
Sbjct: 649 FNEKNRNICSDLLELLIETKQEIP 672


>gi|168828898|gb|ACA33927.1| vasa [Salvelinus leucomaenis]
          Length = 662

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 109/369 (29%), Positives = 179/369 (48%), Gaps = 11/369 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   +S+ GY   T VQ+  +      +D++  AQTGSGKTVAF L +   
Sbjct: 228 FEEAALCESLNRNVSKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTVAFLLPILQQ 287

Query: 62  LLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+ +     +FS    P  + +APTREL  Q+  E       T V   V  GG+S     
Sbjct: 288 LMVDGVAASKFSEVQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTI 347

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R++  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF   +  ++ S   
Sbjct: 348 REILKGCNVLCGTPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRNVVGSPGM 407

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSDRDN 233
             +    +   S       +    D ++ +             SD++   V V    + +
Sbjct: 408 PAKEDRQTLMFSATYPEDIQKLAGDFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRD 467

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++ +L+  G++  +VF  T+         L +      ++ G+  Q+ER  AL   R G
Sbjct: 468 QLLEVLKTTGSERTMVFVETKRQADFIATFLCQEKVNTTSIHGDREQREREQALGDFRSG 527

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +  V +AT VAARG+D+ D++ +++ +L +N +  +HR GRTGR G  G +V F  P+  
Sbjct: 528 KCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPEAD 587

Query: 353 QRRAERLFR 361
              A  L +
Sbjct: 588 SNLARSLVK 596


>gi|143456572|sp|Q0D8N0|RH53_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 53
 gi|218199081|gb|EEC81508.1| hypothetical protein OsI_24871 [Oryza sativa Indica Group]
 gi|222636421|gb|EEE66553.1| hypothetical protein OsJ_23067 [Oryza sativa Japonica Group]
          Length = 602

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 199/368 (54%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I E L+ RG   L  +Q A+L+P ++ KD++  A+TG+GKT+AFG+ +   +L  N
Sbjct: 91  ISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHN 150

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      PLA+ +APTRELA QV +E +              GGV +  + R L  G  
Sbjct: 151 EKNGSGRNPLAIILAPTRELARQVEKEFKESAPLDS---LCVYGGVPISHQMRALNYGVD 207

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I+++ P+ R+ ++FS
Sbjct: 208 VVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFS 267

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  +   Y KD + +++  +  Q          +A        +    I  +  
Sbjct: 268 ATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHAN 327

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +        AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 328 GGKCIVFTQTKREADRLAYAMGRSYACQ-ALHGDISQNQRERTLSGFRDGRFNILVATDV 386

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL +  E  +HRSGRT RAG+KG ++ +   +  R    + ++ 
Sbjct: 387 AARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDI 446

Query: 364 NVSVVWEP 371
                  P
Sbjct: 447 GCKFTELP 454


>gi|46581491|ref|YP_012299.1| DEAD-box ATP dependent DNA helicase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601341|ref|YP_965741.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|46450913|gb|AAS97559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120561570|gb|ABM27314.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
 gi|311235140|gb|ADP87994.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 577

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 145/490 (29%), Positives = 229/490 (46%), Gaps = 22/490 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F ++   + EA    G+ +L  VQ   L      +D++V ++TGSGKT AF L L   L 
Sbjct: 41  FADLAPRLQEACIRAGWQSLMPVQAHALPYLFDGRDLMVQSRTGSGKTGAFLLPLLERLD 100

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                     +  AL + PTRELA+QV  E   L+  TG+ VA   GGV   ++   L+ 
Sbjct: 101 PAEA------STQALVLVPTRELALQVEHEARTLFEGTGLRVAAVYGGVGYGKQNDALRE 154

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GAH VVGTPGR+ DH+  + + +  L+A+  DEAD ML +GF  D++ I    PK+R   
Sbjct: 155 GAHFVVGTPGRVLDHLLRRTMQLDRLRALTFDEADRMLSIGFYPDMKEIQRYLPKRRIAT 214

Query: 184 M-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT  P +  LA  + ++   ++++      +   +        D+D A++ +L   
Sbjct: 215 CLFSATYPPHVLNLAGEFLREPQMLSLSHSQVHVAQTQHMFCESKPMDKDRALIRLLEIE 274

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +AI+FC+T+A+V   T VL    +    LS +LSQ +R   L+ +R+   R  +ATD
Sbjct: 275 NPSSAIIFCNTKANVHYITAVLQGFGYNADELSADLSQSKREQVLERLRNNEVRFLVATD 334

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+P L  VI  E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ R 
Sbjct: 335 VAARGIDIPALSHVILYEPPEDRESYIHRAGRTGRAGAVGTVISLVDIMQKLELQRIARH 394

Query: 363 ANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             + +   P P  E +      R+         Q              +   L A  +  
Sbjct: 395 YRMDIAHRPTPQDEDVARVVGDRLTALLEGAYRQCTGLQRERIQRFTDVARTLAADEEQV 454

Query: 415 KIAAGFL--RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            + A  L  +  ++    P    P    + R    +   A +     R + +GS+     
Sbjct: 455 VLLAMLLDEKYQQSLHAMPPRPRPQRASASRAVDSESDTAPRRRSRGRRDDEGST----- 509

Query: 473 VGSKQKAEAR 482
            G ++K   R
Sbjct: 510 GGDERKTAPR 519


>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
 gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
          Length = 569

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 185/383 (48%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P+ I  +L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L L
Sbjct: 127 VKTFKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPL 186

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +     F     P  L + P+RELA Q    ++             +   +CIG
Sbjct: 187 IMFALEQETGLPFVRNEGPYGLIMCPSRELARQTYNTIKRFCQALTADGHPEIRTMLCIG 246

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+S+  +   ++ G HI V TPGRL D +  K L++   + + +DEAD M+D+GF +D+ 
Sbjct: 247 GISMKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLAIDEADRMIDMGFEEDMR 306

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +      +R+ L+FSAT+   I   AK+     V VN+      + D+      V    
Sbjct: 307 TVFSYFKAQRQTLLFSATMPKKIQNFAKSALVRPVTVNVGRAGAANLDVIQEVEYVKQEA 366

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+  G    ++F   +  V    + L     + VA+ G   Q+ER  A+   
Sbjct: 367 KIVYLLECLQKTGPP-VLIFAEKKKDVDDIHEYLLLKGVEAVAIHGGKDQEEREFAITSF 425

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +  +  V IATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I +
Sbjct: 426 KLSKKDVLIATDVASKGLDFPDVKHVINYDMPEDIENYVHRIGRTGRCGKTGLATTFINK 485

Query: 351 NMQR----RAERLFREANVSVVW 369
           +         + L  EA   +  
Sbjct: 486 SSSEYVLLDLKHLLIEAKQKLPP 508


>gi|302819961|ref|XP_002991649.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
 gi|300140498|gb|EFJ07220.1| hypothetical protein SELMODRAFT_236355 [Selaginella moellendorffii]
          Length = 585

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/398 (30%), Positives = 191/398 (47%), Gaps = 21/398 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  I   L E+     T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 139 IKNFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 198

Query: 59  ASTLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L E    S  S   P  L + P+RELA Q    ++                 +CIG
Sbjct: 199 IMLALQEEQSSSLGSGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIG 258

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +N+   K + LDEAD ++DLGF +DI 
Sbjct: 259 GIDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIR 318

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   AK+     V VN+      + D+      V    
Sbjct: 319 EVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEA 378

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  ++ V    + L       VA+ G   Q+ER  A+   
Sbjct: 379 KIVYLLECLQKTPPP-VLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIASF 437

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATD+A++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 438 KQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINK 497

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAI 378
           N         + L +EA   +        +P  +VE +
Sbjct: 498 NQSETILLDLKHLLKEARQRIPPVLATLDDPMDNVEEV 535


>gi|50954624|ref|YP_061912.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951106|gb|AAT88807.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 491

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 11/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI Q + +AL+ +G      +Q   +   L  +D++  A+TG+GKT  FGL + 
Sbjct: 1   MTFSELNIDQDMVDALAAKGITEPFPIQTQTIPLALTGQDIIGQAKTGTGKTFGFGLPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L        P     AL + PTRELAVQV  +LE   +     +A   GG +   +  
Sbjct: 61  QRL-----GADPEPGVQALVVVPTRELAVQVYEDLEQAASNRPTSIAAIYGGKAYEGQIA 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA +VVGTPGRL D    + LN+S ++ +VLDEAD+MLDLGF  DIE +   +P  
Sbjct: 116 QLKAGAQVVVGTPGRLLDLAGQRLLNLSTVREMVLDEADKMLDLGFLSDIEKLFAQTPAT 175

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R  ++FSAT+   I         +   +R     E +  ++I +        D+D  +  
Sbjct: 176 RHTMLFSATMPGPIVALARRFMTRPIHIRATDPDEGQIQANIKHLVYRAHSLDKDEVVAR 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++F  T+ S ++  + L +  F   A+ G+L+Q++R  A+   + G+  V
Sbjct: 236 ILQSEGRGKTVIFTRTKRSAAKLMEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDV 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V  +      +  
Sbjct: 296 LIATDVAARGIDVDDVTHVINHTIPDDEKTYLHRAGRTGRAGKSGIAVTFVDWEDLHKWA 355

Query: 358 RLFREANVSVVWEPAPS 374
            + R        +P P+
Sbjct: 356 LINRALEFG---QPEPT 369


>gi|71031074|ref|XP_765179.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352135|gb|EAN32896.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 417

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 168/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L   D+L  A+ G+GKT AF + L   
Sbjct: 46  FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALAGHDILARAKNGTGKTAAFVIPLLQK 105

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +         L + PTRELA+Q    ++ L     V   V  GG S+  +   L
Sbjct: 106 LDTSEAQI------QGLILLPTRELALQTSAVVKELGKYLEVQCMVSTGGTSLRNDIMRL 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+ GTPGR+ D        +S    VVLDEAD+ML   F   +E +L   P +++
Sbjct: 160 YKPVHILCGTPGRILDLTNKGVAVLSQCSTVVLDEADKMLSQEFCPIVEALLKFLPTEKQ 219

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT   ++    + Y  +A  +N+  +             V    + + +  +   
Sbjct: 220 IILYSATFPASVQAFKEQYLPNAHEINLMDDLTLKGI-TQFYAYVEERQKVHCLSTLFAR 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V    K + E  F    +  ++ Q  R+      R+G  R  +++
Sbjct: 279 LQINQAIIFCNSVVRVELLAKKITELGFSCFYIHAKMMQSHRNRVFHDFRNGACRCLVSS 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID   + +V++ +   N    LHR GR+GR G  G+++ ++ +  +    ++  
Sbjct: 339 DLFTRGIDFRFVNVVVNFDFPKNSSTYLHRIGRSGRFGHLGLAINLVTEQDKEALFKIEE 398

Query: 362 EANVSVVWEPA 372
           E    +   PA
Sbjct: 399 ELATEIKPIPA 409


>gi|261251266|ref|ZP_05943840.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
 gi|260938139|gb|EEX94127.1| ATP-dependent RNA helicase DbpA [Vibrio orientalis CIP 102891]
          Length = 458

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 140/402 (34%), Positives = 215/402 (53%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L  +
Sbjct: 9   NLRPELTETLDSLGYTEMTPIQQQALPMVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVK 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++  L  +VLDEAD MLD+GF D I+ I+D+ P+KR+ L+
Sbjct: 123 AHILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIDAVPEKRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I +LA     +   V + S +++ +       L    +RD+A+  +L  H  
Sbjct: 183 FSATFPDNIDSLAAKVMVNPEMVKVESTHQKSTIEQKFYKLNTTEERDDALEALLLTHKP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++++VFC+T+  V   T  L    F VV L G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESSVVFCNTKKEVQNVTDELGHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    +
Sbjct: 303 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYMD 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +++     P      E+  +R     +    I G +K+ V  
Sbjct: 363 IAINASELP------EKPVERAFYPKMQTIQILGGKKQKVRA 398



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G KQK  A  ++  L + +G++ + IG I +   +++V V  D V    
Sbjct: 380 YPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKIGKINILAMVSYVAVEHDIVKPAL 439

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 440 KQLQTGK 446


>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
          Length = 633

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 191 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 250

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 251 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 310

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 311 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 370

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 371 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 430

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 431 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 489

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 490 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 549

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 550 ACDESVLMDLKALLLEAKQKVPP 572


>gi|149036001|gb|EDL90667.1| rCG38846 [Rattus norvegicus]
          Length = 497

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 210/455 (46%), Gaps = 35/455 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPH 122

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRM 182
           +V+ TPGRL DH       N+  ++ +VLDEAD +L+ G  D   D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V++++  
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTF 242

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +    + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKMVD----V 406
           +  E    +         A+ E    +IL        +  + L++   DEKK ++    +
Sbjct: 363 IEEEIKQQLAEL------AVEEAQVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQM 416

Query: 407 LLAKHDPEKIA---AGFLRIHRAGLCAPEEITPVS 438
           +L   DP+  A   A   +I +      E+  P  
Sbjct: 417 ILEGKDPDLEAKRKAELAKIKQQNRRFKEKGGPEP 451


>gi|254286224|ref|ZP_04961183.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
 gi|150423639|gb|EDN15581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae AM-19226]
          Length = 438

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/423 (30%), Positives = 208/423 (49%), Gaps = 12/423 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +
Sbjct: 16  LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTS 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             A  +  ++P       P+  ++R    QR        +S  G  +K          P+
Sbjct: 376 EHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPK 435

Query: 415 KIA 417
           K A
Sbjct: 436 KEA 438


>gi|15894071|ref|NP_347420.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023670|gb|AAK78760.1|AE007593_8 ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum ATCC 824]
 gi|325508198|gb|ADZ19834.1| ATP-dependent RNA helicase, superfamily II [Clostridium
           acetobutylicum EA 2018]
          Length = 374

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 191/366 (52%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + E L + G    T VQ   ++     +DV+  AQTG+GKT+AF L +   +    
Sbjct: 8   ISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAFLLPIFENISPT- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 SA  AL + PTRELA+Q+  +   L     + +    GG  +  +++ L+   H
Sbjct: 67  -----LSAVQALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLRGSTH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D I+ K +++  LK+ VLDEAD+ML +GF++D+E IL ++PKKR+ML FS
Sbjct: 122 LIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQMLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATISPA+  LA  Y  + + ++   +     +I+   V      +   +   L+      
Sbjct: 182 ATISPAVKKLAYRYMTNPLTISTKKKEVTLENIEQFVVETTDRKKLEDLCTALKQDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F  T+  V      L    F    L  +L+Q +R   ++  R+G  +  +ATDVA+R
Sbjct: 242 AIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDVASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++  NPE+ +HR GRTGRAG +G +     +  +R+ E +       
Sbjct: 302 GLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLEDIEAAIKFK 361

Query: 367 VVWEPA 372
           +     
Sbjct: 362 IPRRDL 367


>gi|309973610|gb|ADO96811.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2846]
          Length = 418

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 196/387 (50%), Gaps = 11/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL  
Sbjct: 18  SLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTH 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL +APTRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G 
Sbjct: 78  QDPNLEYPHPRALILAPTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRML 183
            I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ R  +
Sbjct: 138 DILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTM 197

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++    
Sbjct: 198 LFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEW 257

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDV
Sbjct: 258 PERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDV 317

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +    
Sbjct: 318 AARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYI 377

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + + + +L+ P
Sbjct: 378 GHSIP---------VSQYETEALLELP 395


>gi|227536058|ref|ZP_03966107.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243955|gb|EEI93970.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/418 (27%), Positives = 192/418 (45%), Gaps = 23/418 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+    + I  A+SE GY   T +Q+  + P L  +D++  AQTG+GKT AF L + 
Sbjct: 3   NSFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPML 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++      AL ++PTRELA+Q+   ++       +   V  GG+    +  
Sbjct: 63  MKL-----KYAQGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+V TPGR  D      +N+  LK +V+DEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 NLEKGVDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  +A ++      + +  +      +      V        ++  L
Sbjct: 178 RQNLLFSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHL 237

Query: 240 RYHGAKNA--IVFCSTR--ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                     IVFC T+  A              QV  +     Q  R N++   ++G  
Sbjct: 238 LKDDESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDVAARG+D+ ++  VI+ E+    E+ +HR GRTGRA  +G ++       +  
Sbjct: 298 RILVATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEEYY 357

Query: 356 AERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDPLFLDSIQGDEK 401
             ++ +    S+     P    +            RE D Q+   DP F  +    + 
Sbjct: 358 VRKIEKLIRQSIPVLEIPEGVFVEKTGFEERQAIAREIDNQKKKDDPDFKGAFHEKKY 415


>gi|84385240|ref|ZP_00988272.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
 gi|84379837|gb|EAP96688.1| ATP-dependent RNA helicase DbpA [Vibrio splendidus 12B01]
          Length = 459

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 204/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  + 
Sbjct: 11  LKPELLNTLDSLGYTEMTPIQALSLPTILDGKDVIGQGKTGSGKTAAFGLGVLQNLRVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GA
Sbjct: 71  FRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+  + +++S L  +VLDEAD ML++GF+D ++ +++++PK R+ L+F
Sbjct: 125 HILVGTPGRILDHLERERIDLSELNTLVLDEADRMLEMGFQDALDAVIEAAPKDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A     +   V + S +   S   +   +     RD+A+  +L +H  +
Sbjct: 185 SATFPKQIKSVADRIMNNPEMVKVESTHDHSSIQQHFYKVEGTEARDDALELMLLHHQPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V      L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKKEVQNVNDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++    +    R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMHRVAQIDEYMDM 364

Query: 366 SVVWEPAPS 374
            +     P+
Sbjct: 365 PIEPSQLPA 373



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G K K  A  ++  L    GI+ +S+G I +     +V V         
Sbjct: 381 YSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVGKINLFAMRAYVAVERSMAKKAL 440

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 441 GKIESGK 447


>gi|258620667|ref|ZP_05715704.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258623759|ref|ZP_05718717.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|262172593|ref|ZP_06040271.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
 gi|258583956|gb|EEW08747.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258587182|gb|EEW11894.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|261893669|gb|EEY39655.1| ATP-dependent RNA helicase RhlB [Vibrio mimicus MB-451]
          Length = 436

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/391 (30%), Positives = 198/391 (50%), Gaps = 12/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G++  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LHPQVIDGLEKKGFIYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNDHKMALLQTLVEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQR 385
             A  +  ++P       P+  ++R    QR
Sbjct: 376 DHAIPTSDYDPSALLTDLPAPLSLRSSPQQR 406


>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
 gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
           uenonis 60-3]
          Length = 436

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 185/382 (48%), Gaps = 10/382 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  +E ++   + + L    +V  + +Q   + P L  +DV+  AQTGSGKT A+ L   
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +  +     P     A+ +APTRELA Q+ +E+E       V          G++  +
Sbjct: 61  NKVARQEL---PKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RR +  GA IV+ TPGRL   +R    ++SH++  VLDEAD MLD+GF +DI  I  + 
Sbjct: 118 QRRGMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKAL 177

Query: 177 PKKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           P+  + +MFSAT+   I            +     ++  +           A        
Sbjct: 178 PEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQKLPIIRS 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +           I+F  T+A+V    + L      V  +  +LSQ+ R   L+  R GR 
Sbjct: 238 LFANPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQR 354
           +V +ATD+ ARGID+ D+ +VI+ E+  + E+ +HR GRT R A  KG+++ ++  + Q+
Sbjct: 298 KVLVATDIVARGIDIDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITLVSPSDQQ 357

Query: 355 RAERLFREANVSVVWEPA-PSV 375
              RL +     +   P  PS+
Sbjct: 358 DFARLEQFLEQEIYRIPLDPSL 379


>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
          Length = 622

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALQLEAKQKVPP 561


>gi|329945971|ref|ZP_08293658.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528419|gb|EGF55397.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 557

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 135/425 (31%), Positives = 200/425 (47%), Gaps = 18/425 (4%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+ I EAL+ +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L
Sbjct: 66  KTFADFGVEPE-ICEALAAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPL 124

Query: 59  ASTLL---AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               L    E     PAS  P  L I PTRELA QV  EL    AK  V +    GG + 
Sbjct: 125 LMDTLGPGEEGWDEDPASGSPQGLVILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAY 184

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  DL+ GA +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL 
Sbjct: 185 EPQIEDLERGAEVVVGTPGRLIDLMDRGVLDLTHVTTVVLDEADEMLDLGFLPDVEKILA 244

Query: 175 SSPKKRRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            +   R  ++FSAT+      +              +   E      +          ++
Sbjct: 245 RTRADRHTMLFSATMPGAVVTLARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNK 304

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R
Sbjct: 305 VEVVARILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFR 364

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  +
Sbjct: 365 NDKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWD 424

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R   + +   + +  EP  +        ++ +  D    + + G         L   
Sbjct: 425 DVPRWRIIAKALGLPI-EEPVETY-----HTSEHLFSDLSIPEKVTG-RLPRHKRTLEGL 477

Query: 412 DPEKI 416
           D E+I
Sbjct: 478 DAEEI 482


>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
           capsulatus H143]
          Length = 1200

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 180/378 (47%), Gaps = 10/378 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +      
Sbjct: 576 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LEN 634

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 635 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 694

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 695 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSAT 754

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +  ++    +I     +     +          +     +
Sbjct: 755 FPRNMEALARKTLAKPVEIIVGGKSVVAPEITQIVEVRNQDTKFVRLLALLGELYADDKN 814

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 815 EDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIDDFKAGVFPILIATS 874

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 875 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 934

Query: 363 ANVSVVWEPAPSVEAIRE 380
              S    P P  + +  
Sbjct: 935 LKQSGQPVPEPVQKLVNS 952


>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
 gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
          Length = 1175

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 201/421 (47%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +S+ GY N TS+Q   L   +  +DV+  A+TGSGKT++F L +   +  ++     
Sbjct: 554 LDVISKLGYENPTSIQSQALPAIMSGRDVIGVAKTGSGKTISFLLPMFRHIKDQHP-LEN 612

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA IVV T
Sbjct: 613 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCT 672

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+ +    ++ ++FSAT
Sbjct: 673 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPNKQTVLFSAT 732

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA- 247
               +  LA+      V + +   +    +I     +   + +   ++ +L    +  A 
Sbjct: 733 FPRNMEALARKTLNKPVEIIVGGRSVVAPEITQIVEVRNENTKFLRLLELLGNLYSDEAN 792

Query: 248 -----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F   + +     + L    +  +++ G   Q +R + +   + G   V IAT 
Sbjct: 793 EDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQIDRDSTIADFKAGIFPVLIATS 852

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 853 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 912

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 913 LKQSGQAVPEP---------VQKLVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 961

Query: 418 A 418
           A
Sbjct: 962 A 962


>gi|145300503|ref|YP_001143344.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853275|gb|ABO91596.1| ATP-dependent RNA helicase SrmB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 407

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 192/387 (49%), Gaps = 9/387 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  +   +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT AF L   
Sbjct: 3   QSFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTAAFVLPAL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P    + L + PTRELA+QV    + L   T + +   IGGVS   +  
Sbjct: 63  QHLL-DFPRRKPGPCRM-LILTPTRELALQVTAHAKALAVHTNLSIETIIGGVSHEEQLP 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVV TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I+  +  +
Sbjct: 121 ALTKTTDIVVATPGRLLEYIDKEEFESHDIEVLVLDEADRMLDMGFVKDVNRIVAEARYR 180

Query: 180 RRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
           +  ++FSAT     +   A     + V ++      +   I     L   +  +   +++
Sbjct: 181 KHTMLFSATLEGAGLEKFANEILNEPVELHAEPPRSERRPITQWVHLADDAAHKLALLIH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    + AIVF  TR  ++  +  L         + GE+ Q +R  +++    G    
Sbjct: 241 ILKDPETQKAIVFVRTRERLAELSGQLQAAGIPCAWIRGEMEQSKRVESIRKFHAGEVPF 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++  +      
Sbjct: 301 LVATDVAARGIDLPNVSHVINYDMPYGTDVYVHRIGRTGRAGNRGCAISLVEAHDMGMVA 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
           ++ R     +       ++ +R +  +
Sbjct: 361 KIERYTEERLKRRV---IDELRPKHKE 384


>gi|297581767|ref|ZP_06943689.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
 gi|297534174|gb|EFH73013.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC385]
          Length = 438

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/423 (30%), Positives = 207/423 (48%), Gaps = 12/423 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             A  +  ++P       P+  ++R    QR        +S  G  +K          P+
Sbjct: 376 EHAIPTSDYDPSTLLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPK 435

Query: 415 KIA 417
           K A
Sbjct: 436 KEA 438


>gi|15640333|ref|NP_229960.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591056|ref|ZP_01678369.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121729652|ref|ZP_01682129.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|147674746|ref|YP_001218575.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|153803135|ref|ZP_01957721.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|153822829|ref|ZP_01975496.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|153827161|ref|ZP_01979828.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|153831014|ref|ZP_01983681.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|227080519|ref|YP_002809070.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|229506898|ref|ZP_04396406.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229509271|ref|ZP_04398754.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229512687|ref|ZP_04402155.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229516215|ref|ZP_04405663.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229520976|ref|ZP_04410397.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229524737|ref|ZP_04414142.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229527200|ref|ZP_04416593.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229606411|ref|YP_002877059.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254227021|ref|ZP_04920581.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|254851439|ref|ZP_05240789.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255744103|ref|ZP_05418057.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262161995|ref|ZP_06031012.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262167974|ref|ZP_06035673.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262192566|ref|ZP_06050716.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|298500937|ref|ZP_07010739.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|32363416|sp|Q9KV52|RHLB_VIBCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040085|sp|A5F3R4|RHLB_VIBC3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797692|sp|C3LQR1|RHLB_VIBCM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9654717|gb|AAF93479.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547089|gb|EAX57224.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 2740-80]
 gi|121628586|gb|EAX61065.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V52]
 gi|124121326|gb|EAY40069.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-3]
 gi|125620457|gb|EAZ48831.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae V51]
 gi|126519647|gb|EAZ76870.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|146316629|gb|ABQ21168.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|148873506|gb|EDL71641.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 623-39]
 gi|149738958|gb|EDM53276.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MZO-2]
 gi|227008407|gb|ACP04619.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae M66-2]
 gi|227012164|gb|ACP08374.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae O395]
 gi|229335208|gb|EEO00692.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae 12129(1)]
 gi|229338318|gb|EEO03335.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae bv. albensis
           VL426]
 gi|229341861|gb|EEO06862.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TM 11079-80]
 gi|229346641|gb|EEO11611.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC9]
 gi|229350197|gb|EEO15149.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae TMA 21]
 gi|229353586|gb|EEO18523.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae B33]
 gi|229356003|gb|EEO20922.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae BX 330286]
 gi|229369066|gb|ACQ59489.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MJ-1236]
 gi|254847144|gb|EET25558.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MO10]
 gi|255738368|gb|EET93759.1| ATP-dependent RNA helicase RhlB [Vibrio cholera CIRS 101]
 gi|262023507|gb|EEY42209.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae RC27]
 gi|262028373|gb|EEY47029.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae INDRE 91/1]
 gi|262031611|gb|EEY50199.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae CT 5369-93]
 gi|297540441|gb|EFH76500.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae MAK 757]
 gi|327483175|gb|AEA77582.1| ATP-dependent RNA helicase RhlB [Vibrio cholerae LMA3894-4]
          Length = 438

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/423 (30%), Positives = 207/423 (48%), Gaps = 12/423 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             A  +  ++P       P+  ++R    QR        +S  G  +K          P+
Sbjct: 376 EHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTAGSRNSNNGGNRKPQQRRPRAPRPK 435

Query: 415 KIA 417
           K A
Sbjct: 436 KEA 438


>gi|148696858|gb|EDL28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 545

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/449 (26%), Positives = 201/449 (44%), Gaps = 23/449 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 13  LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 73  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 126

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 127 VVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQT 186

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT++  +  L      +       +  R    +D R +LV    +D  +V++++  
Sbjct: 187 LLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTF 246

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +    + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 247 QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 307 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHA 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVD----VLLAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++    ++L   D
Sbjct: 367 IEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEGKD 426

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVS 438
           P+  A   A   +I +      E+  P S
Sbjct: 427 PDLEAKRKAELAKIKQQNRRFKEKGGPES 455


>gi|320533118|ref|ZP_08033850.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134690|gb|EFW26906.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 471

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 131/382 (34%), Positives = 188/382 (49%), Gaps = 10/382 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I EALS +G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ L 
Sbjct: 70  KTFADFDVEPEICEALSAKGITHPFPIQALTLPVALEGQDIIGQAKTGTGKTLGFGIPLL 129

Query: 60  STLL---AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L    E     PAS  P AL I PTRELA QV  EL    AK  V +    GG +  
Sbjct: 130 MDTLGPGEEGWDEDPASGSPQALIILPTRELAKQVAEELSTAAAKRTVRIVQVYGGRAYE 189

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  DL+ GA +VVGTPGRL D +    L+++H+  VVLDEADEMLDLGF  D+E IL  
Sbjct: 190 PQIEDLERGAEVVVGTPGRLIDLMERGVLDLAHVTTVVLDEADEMLDLGFLPDVEKILAR 249

Query: 176 SPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +   R  ++FSAT+  A+                 +   E      +          ++ 
Sbjct: 250 TRTDRHTMLFSATMPGAVVALARRYMTRPTHIRAQDPGDEGMTVQTVQQVVYRTHSMNKV 309

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+  R+
Sbjct: 310 EVVSRILQAEGRGRTIIFARTKRTAARVADDLRARGFATAALHGDLGQGAREQALRAFRN 369

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  + 
Sbjct: 370 SKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGNSGTAVTFVDWDD 429

Query: 353 QRRAERLFREANVSVVWEPAPS 374
             R   + +   + +  EP  +
Sbjct: 430 VPRWRIIAKALGLPI-EEPVET 450


>gi|145347521|ref|XP_001418212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578441|gb|ABO96505.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 419

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 47  FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPILEK 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    +         A+ + PTRELA+Q  +  + L    GV V V  GG S+  +   L
Sbjct: 107 VDTSKNII------QAVILVPTRELALQTSQVAKELGKHLGVAVMVTTGGTSLKDDIMRL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIVV TPGRL D        +     + +DEAD++L   F+  I  +++   K R+
Sbjct: 161 HQPVHIVVATPGRLVDLASKSVAKLGQATMLAMDEADKLLSPEFQPVIAQVINFMAKNRQ 220

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 221 ILLYSATFPVTVKDFKDKYLRKPYVINLMEELTLKGI-TQYYAFVEEKQKVHCLNTLFSK 279

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 280 LQINQSIIFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRVFHDFRNGACRNLVSS 339

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I  + +    R+ +
Sbjct: 340 DLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAVNLITYDDRMNLFRIEQ 399

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 400 ELGTEIQQIP 409


>gi|168185001|ref|ZP_02619665.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|237795441|ref|YP_002862993.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182671947|gb|EDT83908.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|229262402|gb|ACQ53435.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 376

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  + D      A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPDID------AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGM 354

Query: 359 LFREANVSVVWEPAPSVEA 377
           + RE    +  +   + + 
Sbjct: 355 IEREIKFKIPRKTLTNSKE 373


>gi|170046412|ref|XP_001850760.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167869183|gb|EDS32566.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 438

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 204/395 (51%), Gaps = 9/395 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + EA     +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 5   DTLCEACKALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQR 64

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       A+ + PTRELA Q+  + E L A  GV   V +GG+ +  +   L    HI+
Sbjct: 65  Y------FAVILTPTRELAYQISEQFEALGASIGVKCCVIVGGMDMVSQALQLARKPHII 118

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  +K +V+DEAD +L+L F  +++ IL   P++RR  +FSA
Sbjct: 119 IATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELDKILKVLPRERRTFLFSA 178

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++S+ +    +    V +    +D  +V+IL      + 
Sbjct: 179 TMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYVFIPAKFKDVYLVHILNELAGNSF 238

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L       V L G++SQ +R  +L   +    ++ I+TDVA+RG
Sbjct: 239 MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLASLNKFKGKDRQILISTDVASRG 298

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G +V  + Q      +R+       +
Sbjct: 299 LDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKKL 358

Query: 368 VWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                    V A++ER  +      L L  I+  +
Sbjct: 359 PEFKCEEDEVMALQERVGEAQRTARLELKDIEERK 393


>gi|195394063|ref|XP_002055665.1| GJ19487 [Drosophila virilis]
 gi|194150175|gb|EDW65866.1| GJ19487 [Drosophila virilis]
          Length = 953

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 189/380 (49%), Gaps = 18/380 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  I + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 239 FEESSLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 298

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 299 IGNQPP-IMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 357

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 358 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 417

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN- 237
           R+++M+SAT    +  LA ++  D +++NI S N   + +I     +   +++   +V  
Sbjct: 418 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMVRL 477

Query: 238 --------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                       +     I+F  T+  V    +++    +   ++ G+ SQ ER + L+ 
Sbjct: 478 LKDIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRSEGYTATSIHGDKSQSERDSVLKD 537

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQFVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 598 PDNAKQARELISVLEEAGQT 617


>gi|63139086|gb|AAY33860.1| eukaryotic initiation factor 4A [Pennisetum glaucum]
          Length = 414

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/377 (31%), Positives = 193/377 (51%), Gaps = 11/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++  R   
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMQF 393

Query: 358 RLFREANVSVVWEPAPS 374
            + R    SVV E  P+
Sbjct: 394 DIQRFY--SVVIEELPT 408


>gi|312083101|ref|XP_003143720.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
 gi|307761116|gb|EFO20350.1| ATP-dependent RNA helicase in chromosome III [Loa loa]
          Length = 463

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 226/441 (51%), Gaps = 16/441 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +    V+ EA     +   T VQ A L    +++D++  A+TGSGKT AF + +  
Sbjct: 25  TFQQLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQ 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +        AL + PTRELA Q+G + E L A  G+++AV +GGV    +   
Sbjct: 85  ALLETPQK------LFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLA 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H++V TPGRL DH+      N+  LK +V+DEAD +L++ F  ++E IL   PK+
Sbjct: 139 LAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVEVEKILKVIPKE 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  ++SAT++  +  L +    D VR+ ++S+ +    +    + +    ++  +V IL
Sbjct: 199 RRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLVYIL 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVFCST  S  R   +L +  F  V L G++SQ +R  +L   +   +   I
Sbjct: 259 NEMAGQTAIVFCSTCVSALRTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKTSTTLI 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVA+RG+D+P ++LV++ ++ +  ++ +HR GRT RAGR G++V  + Q      +R+
Sbjct: 319 CTDVASRGLDIPHVDLVLNYDVPTQSKDYVHRVGRTARAGRSGVAVTFVTQYDVEIYQRI 378

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQRILQDPLF-LDSIQGDEKKMVDVLLAK--HD 412
            R     +        + +    R  +AQ++ +  +  ++  +G ++K  D       +D
Sbjct: 379 ERLIGKKLPLFETVENDVMLLMERVEEAQKLAKREMKEMEEKKGRKRKQFDDDDDDEVND 438

Query: 413 PEKIAAGFLRIHRAGLCAPEE 433
            E+  A   ++ R       E
Sbjct: 439 AEESNAFRKKLKRKQKGTHNE 459


>gi|209519764|ref|ZP_03268550.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209499774|gb|EDZ99843.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 466

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 187/369 (50%), Gaps = 1/369 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   + +R Y   T VQ   +   L  KDV+ +AQTG+GKT  F L L   L+     
Sbjct: 10  DPLLRNVQDRNYQIPTPVQVKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQRLVQHGPA 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S   A   L + PTRELA QV +          +      GGVS++ +   L+ G  ++
Sbjct: 70  VSSNRA-RVLVLVPTRELAEQVLQSFIDYGKGLDLQFLAAYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    ++ +VLDEAD MLDLGF  ++  +  + P +R+ L+FSAT
Sbjct: 129 VATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPARRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  I  +A N  +  V ++++  N   S I    V V   ++ +  ++++  +  ++A+
Sbjct: 189 FTDDIRAMAANILRGPVNISVSPPNATASKIKQWVVPVDKKNKPDLFMHLVAENSWEHAL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V     +L E  + V  + G+  Q  R  AL+  +     + +ATDVAARG+
Sbjct: 249 VFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTREVHMLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LVI+ +L    ++ +HR GRTGRAG  G++V ++  +   +   +      ++ 
Sbjct: 309 DIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIEALIRQTLP 368

Query: 369 WEPAPSVEA 377
            +  P  EA
Sbjct: 369 RKEEPGFEA 377


>gi|193641205|ref|XP_001950880.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 569

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 181/381 (47%), Gaps = 12/381 (3%)

Query: 1   MKIFEN----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           +K FE+     P  I + + ++ ++  + +Q       +   D++  AQTG+GKT+A+ L
Sbjct: 183 IKTFEHAFSSYPD-IMKVIKKQKFIVPSPIQCQAWPIIMSGHDLIAIAQTGTGKTLAYIL 241

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                LL +         P  L + PTREL +Q+  E+         VV V  GGVS   
Sbjct: 242 PALIHLLQQPTPRIKRIGPSVLILGPTRELVLQIHDEITKYLHNNIKVVCVYGGGVSALT 301

Query: 117 ERR-DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +         I+V TPGRL D +  + + + H+  +VLDEAD MLD+GF++ IE  L  
Sbjct: 302 HQELIQAEKPDIIVATPGRLNDLVGIQAIKLDHVSYMVLDEADRMLDMGFKNQIELSLRH 361

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               ++ ++ SAT   A+  LA  + K+ + + I S +    D   + +++    +    
Sbjct: 362 IRPDKQTILTSATWPTAVQNLANYFAKNPLHITIGSLDLSTVDTVTQKIIILKEHQKEGW 421

Query: 236 VNILRYHG---AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++    +        I+F   + SV +  +           + G   Q +R  +L  +R+
Sbjct: 422 LDNFISNDLSKNDKVIIFMRKKTSVDKMYENFNSKNIGCRCIHGGRLQADREASLADIRN 481

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + IATDVA+RGID+ D+ LVI+ +   N E  +HR GRTGRAG+ G ++ +  +  
Sbjct: 482 GVVSILIATDVASRGIDIHDISLVINYDFPLNIEEYVHRVGRTGRAGKTGSAITLFSKYD 541

Query: 353 QRRAERL---FREANVSVVWE 370
           +  A  L     ++   +  E
Sbjct: 542 KFNASALIGVLEKSKQPIPPE 562


>gi|302496500|ref|XP_003010251.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
 gi|291173793|gb|EFE29611.1| hypothetical protein ARB_03506 [Arthroderma benhamiae CBS 112371]
          Length = 449

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 168/364 (46%), Gaps = 8/364 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +         N + +   
Sbjct: 2   GIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER---TNPKIAK-- 56

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L +  HI+VGTPG
Sbjct: 57  -TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNDTVHIIVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D       ++S     V+DEAD++L   F   IE +L   PK R++++FSAT    +
Sbjct: 116 RILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQVMLFSATFPIIV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            T    + ++   +N+  E             V    + + +  +        +I+FC++
Sbjct: 176 KTFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +        + Q  R+      R+G  R  + +D+  RGID+  +
Sbjct: 235 TNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +E    +   P P
Sbjct: 295 NVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNLYKIEQELGTEIQPIP-P 353

Query: 374 SVEA 377
           S++ 
Sbjct: 354 SIDK 357


>gi|322820447|gb|EFZ27062.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 595

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 111/359 (30%), Positives = 185/359 (51%), Gaps = 7/359 (1%)

Query: 1   MKIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           +  F+ +    P  + + L+ +G+ + T+VQ       LR +D++  A+TGSGKT+AF +
Sbjct: 109 LSNFDQLSAFVPAYLQKKLTAQGFTSPTAVQAQAWPILLRGRDMVGVAKTGSGKTLAFMV 168

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              + +  +         P+ + +APTRELA Q+ +E + +     +      GG     
Sbjct: 169 PALAHIAMQEP-LRTGDGPMVVVLAPTRELAQQIEQETKKVL-PHDLRCGCVYGGAPKGP 226

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NG HI+V TPGRL D +  K +N   +  +VLDEAD MLD+GF   +  I    
Sbjct: 227 QLGILRNGVHILVATPGRLIDFLEIKRINFFRVTYLVLDEADRMLDMGFEPQVRAICGQI 286

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAI 235
              R+ LMFSAT    I  LA  +QKD +R+N+ S     + D+    +L     + + +
Sbjct: 287 RPDRQTLMFSATWPKEIQRLAAEFQKDWIRINVGSTELLANKDVTQHFILTQEHAKMDEL 346

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L     +  ++FC T+ +       L    +  +A+ G+  Q++R   L+  R    
Sbjct: 347 KKLLANRLNQRVLIFCKTKRTADDLEWQLKRWGYDAMAIHGDKEQRQREFILERFRKDPR 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
              +ATDVAARG+D+ +LE VI+ +     ++ +HR GRTGRAG KG +  +I +  ++
Sbjct: 407 LCLVATDVAARGLDIKELETVINYDFPMQIDDYVHRIGRTGRAGAKGEAFTLITKREKQ 465


>gi|254566021|ref|XP_002490121.1| Cytoplasmic DExD/H-box helicase [Pichia pastoris GS115]
 gi|238029917|emb|CAY67840.1| Cytoplasmic DExD/H-box helicase [Pichia pastoris GS115]
 gi|328350520|emb|CCA36920.1| ATP-dependent RNA helicase DDX6/DHH1 [Pichia pastoris CBS 7435]
          Length = 472

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 16/381 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  ++ + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT +F +   
Sbjct: 28  NSFESFHLKRELLMGIFEAGFEKPSPIQEESIPIALTGRDILARAKNGTGKTASFVIPSL 87

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + ++        +L + PTRELA+Q  + ++ L    GV V V  GG  +  +  
Sbjct: 88  QKIKPKMNKI------QSLILVPTRELALQTSQVVKTLGKHLGVQVMVSTGGTLLRDDII 141

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +  H++VGTPGR+ D    K       K  ++DEAD+ML   FR+ IE I+   P +
Sbjct: 142 RLNDPVHVLVGTPGRILDLASRKLAEFDQCKTFIMDEADKMLSREFRNVIEQIITFFPSR 201

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD------IDYRAVLVALSDRDN 233
                 +        T     +    +           D      I      V    + +
Sbjct: 202 LPGGANAYQSLLFSATFPLTVKSFMDKHLYKPYEINLMDELTLKGITQYYAFVEEKQKLH 261

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +        +I+FC++   V   +K L +  +        + Q  R+      R G
Sbjct: 262 CLNTLFSKLQINQSIIFCNSTKRVELLSKKLTDLDYSCYYSHARMPQASRNKVFHEFRQG 321

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             R  + +D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +
Sbjct: 322 HVRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHFGIAINLINWDDR 381

Query: 354 RRAERLFREANVSVVWEPAPS 374
               ++ +E    +  +P PS
Sbjct: 382 FNLYKIEQELGTEI--KPIPS 400


>gi|198432373|ref|XP_002121386.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Ciona intestinalis]
          Length = 727

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 177/357 (49%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + I  A+ +  +   T +Q   +   +  +DV+  A+TGSGKT AF   +   ++ + 
Sbjct: 250 FDEKIISAIRKHNFTQPTPIQAQGIPCGMSGRDVIGIAKTGSGKTAAFIWPMLVHIM-DQ 308

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL  Q+  E +      G+    C GG ++H +++ L +G  
Sbjct: 309 PELKKGDGPVGLIVAPTRELCQQIYFECKRFGKVYGLRSVCCYGGGNMHEQQKGLSDGCE 368

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ DH++ K  N+  +  +V DEAD M ++GF   +  I +     R+ L+FS
Sbjct: 369 IVVATPGRIIDHVKKKNTNLLRVTYLVFDEADRMFEMGFEYQVRSIANHVRPDRQTLLFS 428

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHGA 244
           AT    I  LA++   D VR+        ++D+     +   +D     +   I+ +   
Sbjct: 429 ATFRKRIERLARDILTDPVRIIQGDVGEANADVTQIVEVFKTADMKWKWLLRRIIPFTSE 488

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF + +A+       L      V  + G++ Q +R+N +   +  +    +ATDVA
Sbjct: 489 GSLLVFVTKKANAEELATNLINEGHDVALIHGDMQQYDRNNVITNFKKKQVATLVATDVA 548

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P +  VI+ +++ + +   HR GRTGRAG+KG +  ++       +  L R
Sbjct: 549 ARGLDIPLIRNVINYDVARDIDTHTHRIGRTGRAGQKGTAYTLVTSKDTYFSGDLVR 605


>gi|26344810|dbj|BAC36054.1| unnamed protein product [Mus musculus]
          Length = 411

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/369 (29%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +     
Sbjct: 49  LLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ----- 103

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V G
Sbjct: 104 -VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 162

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+ 
Sbjct: 163 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLP 222

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIV 249
             I  +   +  D +R+ +  +      I    V +     + + + ++        A++
Sbjct: 223 HEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVI 282

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D
Sbjct: 283 FCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 342

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +  +  
Sbjct: 343 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDE 402

Query: 370 EPAPSVEAI 378
            P    + I
Sbjct: 403 MPMNVADLI 411


>gi|120599366|ref|YP_963940.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292637|ref|YP_001183061.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559459|gb|ABM25386.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145564327|gb|ABP75262.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 449

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 191/396 (48%), Gaps = 6/396 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQTLPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF   ++ I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +  A     AS +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  IVF +TR    R    L+   F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +++      +      P +EA      ++  Q P+ 
Sbjct: 359 KKVQIFLRKTFEISIIPGLEAKFSGLKEQSKQTPIK 394


>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
 gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
          Length = 401

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 186/374 (49%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELAVQV + ++       +      GGVS   ++  L  G  
Sbjct: 66  GETQRKKRIRAVILTPTRELAVQVEQNIKKYAKFLNLTSLAMYGGVSYQHQKDRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FS
Sbjct: 126 ILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQDVQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   DA  ++IA  +   ++I+   V V    +   + +++       
Sbjct: 186 ATLSTPVRALAKSAISDAEEISIAKTDASKANIEQWLVTVDKDRKSALLSHMITEGNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R   L   + G  +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGHLKFLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ ++    ++ +HR GRTGRA   G ++  + ++  +    + +     
Sbjct: 306 GIDIDNLPRVVNYDMPFPADDYVHRIGRTGRADATGEAISFLSKDNFKNLCIIEKRLGHL 365

Query: 367 VVWEPAPSVEAIRE 380
           +        E  +E
Sbjct: 366 IERRVVEGFEPRKE 379


>gi|297812857|ref|XP_002874312.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
 gi|297320149|gb|EFH50571.1| RNA helicase [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 137/417 (32%), Positives = 217/417 (52%), Gaps = 13/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +S        P  L +APTRELA QV +E++        V     GGVS   ++  L
Sbjct: 168 AGDYSAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSAL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285

Query: 182 MLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   +        +   +   V    E        Y     + S R      I
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V 
Sbjct: 346 TVYAKGGKTIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 404

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L R+      +   P+V  + E  A +++     L+++  D  K       K   EK
Sbjct: 465 LERDVGCHFEFISPPTVGDLLESSADQVV---ATLNAVHPDSIKFFSATAQKLYEEK 518


>gi|119468940|ref|ZP_01611965.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
 gi|119447592|gb|EAW28859.1| putative ATP-dependent RNA helicase (rhlE-like) [Alteromonadales
           bacterium TW-7]
          Length = 415

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 190/355 (53%), Gaps = 2/355 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L   LL  
Sbjct: 10  NLDPLLLTAIEQNNYTTPTAIQIKTIPPILAGNDVMGSAQTGTGKTAAFVLPLLHKLLNT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P  A   + + PTRELA QV    E     + V  A+  GG S+  + + L   A
Sbjct: 70  PKKDEPGIA-RVVILTPTRELAQQVFASFEKYAQGSNVQGALAYGGASIGPQIKAL-KTA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I+ IL   P  R+ L+F
Sbjct: 128 QVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIKRILRHIPGDRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   ++  L++   K+   + +   N    +++     V    +   + +++     +
Sbjct: 188 SATFDDSVFGLSEKLLKNPELIEVDKRNSAAVEVEQIIYAVDEDRKRELVSHMIGMKNWR 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +ATDVAA
Sbjct: 248 QVLIFTRTKQMADKLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGTTRVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           RG+D+P L+ VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E + 
Sbjct: 308 RGLDIPALKYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSIDEQWLLEEIE 362


>gi|115700917|ref|XP_001192557.1| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
 gi|115749264|ref|XP_788694.2| PREDICTED: similar to RNA helicase p47 [Strongylocentrotus
           purpuratus]
          Length = 538

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 182/380 (47%), Gaps = 11/380 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D++  A+ G+GKT A+ + +   
Sbjct: 151 FEDYCLSRPLLMGIFEKGWEKPSPIQEESIPIALTGRDIMARAKNGTGKTGAYTIPVLEK 210

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              EN+         AL + PTRELA+Q  +  + L   TG  V V  GG S+  +   L
Sbjct: 211 TNTENNFI------QALVLVPTRELALQTSQICKQLSKHTGHNVMVTTGGTSLRDDILRL 264

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++  H+V+ TPGR+ D ++     +     +VLDEAD++L   F++ ++ I+   P+ R+
Sbjct: 265 EDPVHLVIATPGRILDLMKQSIAKMDKCSVLVLDEADKLLSKDFQNMLDDIISFLPQDRQ 324

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++++SAT    +      Y   A  +N+  E             V    + + +  +   
Sbjct: 325 IMLYSATFPITVKNFMDRYLTKAYEINLMQELTLKGI-TQYYAFVEEKQKVHCLNTLFSK 383

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC+T   V    K + E  +    +   + Q+ R+      R+G  R  + T
Sbjct: 384 LQINQAIIFCNTTQRVELLAKKITELGYSCYYIHSRMQQEHRNRVFHDFRNGACRNLVCT 443

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +     + +
Sbjct: 444 DLFTRGIDIQSVNVVINFDFPRVSETYLHRIGRSGRYGHMGLAINMITHDDRVPMYVIEK 503

Query: 362 EANVSVVWEPAPSVEAIRER 381
           E +  +V  P P  EA+ +R
Sbjct: 504 ELSTKIV--PFPCKEAVDKR 521


>gi|320325391|gb|EFW81456.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327468|gb|EFW83481.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877269|gb|EGH11418.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKYQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVINFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 409

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 200/371 (53%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+E GY+  T +Q   +   L ++DV+  AQTG+GKT AF L +   LL +
Sbjct: 7   SLHSQLVNTLAELGYLQPTPIQVEAIPAILAKQDVMAGAQTGTGKTAAFALPILQQLLLD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+         AL + PTRELAVQV +        T + V +  GGVS+  ++ + + G 
Sbjct: 67  NESQDAPKDIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAEFKAGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL DH+R   LN+ +L  +V DEAD MLD+GF D+I+ +L   P +R+ L+F
Sbjct: 127 DVLIATPGRLLDHLRQGVLNLKYLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  +I   +KN  +D   + +A  N   + ++ R   +    +   + +++R    +
Sbjct: 187 SATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+  V + T  L +      A  G+LSQ  R   L+  + G  +V +ATDVAA
Sbjct: 247 QVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    + 
Sbjct: 307 RGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEALLDK 366

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 367 RLPQQWYPGFE 377


>gi|297847848|ref|XP_002891805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337647|gb|EFH68064.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 412

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYT- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LVQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  I ++ +R    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFITRDDERMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|196003440|ref|XP_002111587.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
 gi|190585486|gb|EDV25554.1| hypothetical protein TRIADDRAFT_23405 [Trichoplax adhaerens]
          Length = 463

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/409 (26%), Positives = 195/409 (47%), Gaps = 10/409 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + +A+S  G+ + T +Q + +   L  KD+   A TG+GKT AF L + 
Sbjct: 17  KSFRDINLSRPLLKAISTLGFEHPTPIQSSTIPIALLGKDICACAATGTGKTAAFMLPIL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+    R         L + PTRELA+QV    + L   T +   +  GG+ +  +  
Sbjct: 77  ERLIYRPKRI---PVTRVLVLVPTRELAIQVFSVGKSLCQYTDIEFCLAAGGLDIASQEA 133

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    IV+ TPGRL DH       ++  ++ +VLDEAD  +   F+D ++ ++  SPK
Sbjct: 134 ALRRNPDIVIATPGRLVDHLHNTPSFDLQGIEILVLDEADRQIHEHFKDQMDELIRLSPK 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAI 235
            R+ ++FSAT++  +  LA       +R+ I       +++    + +      DR+  I
Sbjct: 194 GRQTMLFSATMTDEVEELATLSLNKPIRLFINRNTDVANNLRQEFIRIRPAREDDREAII 253

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      +  ++F   +  V R   VL      V  L G L+Q +R  A    + G  
Sbjct: 254 AALCYRQFNERCLIFMPMKWQVHRLRIVLGLLGLSVDELHGNLTQLQRLEAFNRFKKGEI 313

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATD+AARG+D+  +  VI+  + +  +  +HR GRT RAG+ G S+ ++ +  ++ 
Sbjct: 314 GILVATDLAARGLDIEGVRTVINYNIPATTKQYVHRVGRTARAGQFGRSITLVVEKERKL 373

Query: 356 AERLFREANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            + + + +  +V      P +    +R  Q+I  D   +   + +EK  
Sbjct: 374 LKTIVKNSKTAVKSRIISPEIITKYKRKIQKIQADIKDILKAEEEEKAF 422


>gi|261868794|ref|YP_003256716.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414126|gb|ACX83497.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 418

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 197/385 (51%), Gaps = 12/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL+++G+   T +Q   L   LR KDV   AQTG+GKT+AF  AL   LL   
Sbjct: 16  LHPLVLQALNDKGFDFCTPIQALSLPITLRGKDVAGQAQTGTGKTIAFLSALFHHLLTY- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A+ P AL +APTRELAVQ+  + +     T    A+  GG    ++ + ++NG  
Sbjct: 75  PKQTEANQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIENGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           +++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +       P++R  ++
Sbjct: 135 VLIGTTGRVIDYVKQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQRLTML 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA         V I  E +    I       +  D+   ++ +L     
Sbjct: 195 FSATLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPSNRDKMPLLLTLLEEEWP 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVA
Sbjct: 255 ERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKKFTDGDLDILVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 315 ARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAIEEYIG 374

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD 389
            S+          + + D   +LQD
Sbjct: 375 HSIT---------VSQYDPNALLQD 390


>gi|71656836|ref|XP_816959.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70882121|gb|EAN95108.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 617

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 10/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M +F ++  P  I ++  + GY   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 69  MLLFSDLVAPDSIHQSFIDLGYKEPTPIQSIAWPILLNSRDLVGVAKTGSGKTMAFMVPA 128

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E   +  +   +   C+ G +    +
Sbjct: 129 ALHIMAQPP-VRPGDGPIALVLAPTRELAVQIEEETRKVLRRIPTIATTCLYGGAPKGPQ 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G H+ + TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I     
Sbjct: 188 IRTLRAGVHVAIATPGRLIDLLEMRATNLLRVTYLVLDEADRMLDMGFEIQIRKICSQIR 247

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++Q+D +RV++ SE+   ++D+    ++V   D+   + 
Sbjct: 248 SDRQTLMFSATWPQEIRNLAASFQRDFIRVHVGSEDLVANNDVCQHVIVVEEYDKQRRLE 307

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMRDGRA 295
            IL+  G +  ++F  T+ +       L       V+A+ G+  Q +R   L   R    
Sbjct: 308 EILQKLGRQRVLIFVKTKRTADSLHGSLRRILGGAVMAIHGDKEQSQRDYVLDRFRRDDR 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQN 351
            V +ATDVAARG+D+ +L++VI+ ++ +N E+ +HR GRTGRAG++G +   +    P  
Sbjct: 368 SVLVATDVAARGLDIKNLDVVINFDMPTNIEDYVHRIGRTGRAGQRGDAYSFVSGADPSK 427

Query: 352 MQRRAERLFREANVSVVWE 370
             R    L R AN  V  E
Sbjct: 428 TIRDLVDLLRRANQEVPPE 446


>gi|71406310|ref|XP_805705.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70869212|gb|EAN83854.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 660

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 196/437 (44%), Gaps = 21/437 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +  
Sbjct: 52  FSDFDLLPNTV-EALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPILE 110

Query: 61  TL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L      N++      P A+   PTRELA+QV   +  +    G VV    GGV+   +
Sbjct: 111 KLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISK--GFVVTALYGGVAYSTQ 168

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L +G  +VV TPGR  D +  + L    +K V LDEAD MLD+GF+DDIE +L    
Sbjct: 169 ERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVA 228

Query: 178 KKRRMLMFSATISP----AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           ++      +         A      +      R     +      +     +     + +
Sbjct: 229 EQNGSTEGNPNHQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCH 288

Query: 234 AIVNILR--------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                                 +VF +T+      +    +   Q +   G++ Q++R +
Sbjct: 289 FSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCL--HGDMQQEQRES 346

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V
Sbjct: 347 TMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCV 406

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMV 404
            +     +   ER+ R A +     PAP+ + I    A+   +D   ++ S      +  
Sbjct: 407 LLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMEQA 466

Query: 405 DVLLAKHDPEKIAAGFL 421
             LL   D  +I A  +
Sbjct: 467 AELLKDADATEILASAI 483


>gi|325179839|emb|CCA14242.1| Os08g0159900 putative [Albugo laibachii Nc14]
          Length = 1173

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 8/382 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + + + + GYV   ++Q   L   +  +DV+  A+TGSGKT+AF L +   +L + 
Sbjct: 578 FSLRLQQLIQKHGYVEPFAIQRQALPAIMAGRDVIGIAKTGSGKTLAFLLPMFRHILHQP 637

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +AP RELA Q+  E +      G+      GG SV  +  +L+ G+ 
Sbjct: 638 P-LKEGEGPIGLIMAPARELAQQIYVEAKRFAKDLGLRATAVYGGSSVSEQIGNLKRGSE 696

Query: 127 IVVGTPGRLCDHIRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV+ TPGR+ D +      +     +  VVLDEAD M D+GF   I  I+ +    R+ L
Sbjct: 697 IVICTPGRMIDILCMSAGKVVSLQRVSYVVLDEADRMFDMGFEPQITKIIMNIRPDRQTL 756

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT   A+ TLA+      V + + + +    DI     +   SD+   ++ +L Y  
Sbjct: 757 LFSATFPRAVETLARKVLLKPVEITVGARSTASGDITQYVEVREESDKFMRLLQLLGYWY 816

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            K N +VF +T+ +  +  + L +  +  ++L G   Q +R   +   +     + +AT 
Sbjct: 817 GKGNVLVFVNTQQTCDQIFQDLMKAGYPALSLHGGKDQIDRDYTIDDFKRQVRTLMVATS 876

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VA RG+D+ DL LV++    ++ E+ +HR GRTGRAGRKG +   I  + +  A  L   
Sbjct: 877 VAGRGLDVKDLVLVVNYHCPNHLEDYVHRVGRTGRAGRKGTAYTFISPDEEEYAVDLVNA 936

Query: 360 FREANVSVVWEPAPSVEAIRER 381
              A  +V  E     E  +E+
Sbjct: 937 LEHAKQTVPTELVTLAENFKEK 958


>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 438

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 185/382 (48%), Gaps = 10/382 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  +E ++   + + L    +V  + +Q   + P L  +DV+  AQTGSGKT A+ L   
Sbjct: 1   MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +  +     P     A+ +APTRELA Q+ +E+E       V          G++  +
Sbjct: 61  NKVARQEL---PKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RR +  GA IV+ TPGRL   +R    ++SH++  VLDEAD MLD+GF +DI  I  + 
Sbjct: 118 QRRGMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKAL 177

Query: 177 PKKRRMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           P+  + +MFSAT+   I            +     ++  +           A        
Sbjct: 178 PEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQKLPIIRS 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +           I+F  T+A+V    + L+     V  +  +LSQ+ R   L+  R GR 
Sbjct: 238 LFTNPESEVSRTIIFAGTKATVHALAQTLSRDGLPVAEMHSDLSQERREEVLRDFRMGRI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQR 354
           +V +ATD+ ARGID+ D+ +VI+ E+  + E+ +HR GRT R A  KG+++ ++  + Q+
Sbjct: 298 KVLVATDIVARGIDIDDIAVVINYEVPRDFEDYVHRIGRTARGADGKGLAITLVSPSDQQ 357

Query: 355 RAERLFREANVSVVWEPA-PSV 375
              RL       +   P  PS+
Sbjct: 358 DFARLEHFLEQEIYRIPLDPSL 379


>gi|194857377|ref|XP_001968940.1| GG25145 [Drosophila erecta]
 gi|190660807|gb|EDV57999.1| GG25145 [Drosophila erecta]
          Length = 512

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 5/365 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +  +I E +++ GY   T +Q+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 92  IRNFEHAQLRDIIRENVTKSGYKVPTPIQKVSIPVIVAGRDLMACAQTGSGKTAAFLVPI 151

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S LL +         P A+ ++PTRELA+Q+  E      ++ + + +  GG S   + 
Sbjct: 152 LSKLLDDPQDLEIGK-PQAVIVSPTRELAIQIFSEARKFAFESYLKINIVYGGTSFKHQN 210

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FILDSSP 177
             +  G H+++ TPGRL D +    +     + VVLDEAD MLD+GF + +  F+   + 
Sbjct: 211 ECITKGCHVLIATPGRLLDFVDRAFITFEDTRFVVLDEADRMLDMGFSESMRKFMTHPTM 270

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +     +  +   P           +                  + +         + + 
Sbjct: 271 RPEHQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLM 330

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +    A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V
Sbjct: 331 EILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKV 390

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRA 356
            IAT VAARG+D+ ++  V++ ++ +N ++ +HR GRTGR G  G +     P + Q  A
Sbjct: 391 IIATSVAARGLDIKNINHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDHDQALA 450

Query: 357 ERLFR 361
             L +
Sbjct: 451 GDLIK 455


>gi|261755014|ref|ZP_05998723.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
 gi|261744767|gb|EEY32693.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
           3 str. 686]
          Length = 517

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 194/365 (53%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 111 VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 170

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 171 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 229

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 230 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 289

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 290 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 349

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 350 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 409

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P +  V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 410 VPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 469

Query: 369 WEPAP 373
            + AP
Sbjct: 470 IKDAP 474


>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 423

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/357 (31%), Positives = 178/357 (49%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   L    Y   T +Q A +   L+ KD++  AQTG+GKT AF L L   L   +
Sbjct: 11  LSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALPLIQQLSERS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +  P     AL ++PTRELA Q+   +        +  AV  GGV    + ++L  G  
Sbjct: 71  GKP-PGRRVRALILSPTRELAAQIHENIRAYARGLHLSTAVIFGGVGYASQFKELAGGLD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+  + +++  ++ ++LDEAD MLD+GF   ++ I+   P+KR   MFS
Sbjct: 130 ILVATPGRLIDHLERRTVSLDGVETLILDEADHMLDMGFAPALKKIVSKIPRKRHTQMFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGA 244
           AT+   I  LA+   +    V ++  +     ++    +V      R   +  + +    
Sbjct: 190 ATMPDNIRQLAQTLLQKPETVRVSPPSSTADRVEQFLCMVGSQSEKRLLTLELLKQQELP 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  TR    R    L+   +   A+ G+ SQ  R   L+  R G+  V +ATD+A
Sbjct: 250 GRTLIFTRTRHGADRLASFLSGKDYPASAIHGDKSQGRRERMLREFRSGKTPVLVATDIA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARGID+ D+ LVI+ +L   PE  +HR GRT RAG  G ++ +      R+A  + +
Sbjct: 310 ARGIDVKDVRLVINYDLPEEPEVYVHRIGRTARAGAAGQAIALCSPEEIRKARNVHK 366


>gi|71747184|ref|XP_822647.1| ATP-dependent DEAD-box RNA helicase [Trypanosoma brucei TREU927]
 gi|70832315|gb|EAN77819.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei]
 gi|261332418|emb|CBH15413.1| ATP-dependent DEAD-box RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 406

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 171/373 (45%), Gaps = 10/373 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +  
Sbjct: 32  TFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLE 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +  +           AL + PTRELA+Q  +  + L    TG+ V V  GG ++  +  
Sbjct: 92  KVDTQLPHI------QALLMVPTRELALQTAQVTKELGKHITGLEVMVTTGGTTLRDDIL 145

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ+  H++V TPGR  D        + H + +VLDEAD++L   F   +  +    PK 
Sbjct: 146 RLQSVVHVLVATPGRAVDLASKGTAKLDHCRIIVLDEADKLLSQEFTSLMRDLYGFLPKG 205

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    +   A  Y ++   +N+  E             V    + + +  + 
Sbjct: 206 RQSLLFSATFPVTVKDFADKYLRNPYEINLMEELTLRGV-TQYYAFVEERQKIHCLNTLF 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  +
Sbjct: 265 NRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLV 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +    +    R+
Sbjct: 325 CSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYEDRHNVYRI 384

Query: 360 FREANVSVVWEPA 372
            +E +  +   PA
Sbjct: 385 EQELDTEIKPIPA 397


>gi|115840564|ref|XP_785431.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 48
           [Strongylocentrotus purpuratus]
          Length = 360

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 111/364 (30%), Positives = 192/364 (52%), Gaps = 7/364 (1%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            E G+   +++Q+  + P ++ +DV+  AQ+G+GKT  F +++   L  +          
Sbjct: 3   RELGFEKPSAIQQRAIKPVVKGRDVIAQAQSGTGKTATFSISILQCLDTQ------VRET 56

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
            AL ++PTRELA Q+ + +  L     V    CIGG +V  + R L  G H+V GTPGR+
Sbjct: 57  QALILSPTRELANQIQKVILALGDYMSVQCHSCIGGTNVGEDIRKLDFGQHVVSGTPGRV 116

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT 195
            D IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++FSAT+   I  
Sbjct: 117 FDMIRRRNLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLFSATLPHEILE 176

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
           +   +  D +R+ +  +      I    V +     + + + ++        A++FC+T+
Sbjct: 177 MTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK 236

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V   T+ + E  F V ++ G++ Q+ER   ++  R G +RV I TDV ARG+D+  + 
Sbjct: 237 RKVDWLTEKMREANFTVSSMHGDMPQKEREAIMKEFRSGASRVLITTDVWARGLDVQQVS 296

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +  +   P   
Sbjct: 297 LVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNV 356

Query: 375 VEAI 378
            + I
Sbjct: 357 ADLI 360


>gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 182/365 (49%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             +   L    Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  DPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQRLTMEGAK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV            +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMALRKGIDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  + L+A+VLDEAD MLDLGF ++++ +  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQNAVGFAQLQALVLDEADRMLDLGFAEELDALFSALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A+   +D + V ++  N     +    V V    +    +++L        +
Sbjct: 189 FSEPIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLAERRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +    L        A+ G+  Q  R  AL+  + G  +V +ATDVAARG+
Sbjct: 249 VFVKTRKGVDQLVDELQAQGIASDAIHGDKPQASRLRALERFKAGEVQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++ +L    E+ +HR GRTGRAG  G ++ ++  +   +   +    N  + 
Sbjct: 309 DIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVAADEVDQLAAIETLINQVLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RHDEP 373


>gi|313221076|emb|CBY31906.1| unnamed protein product [Oikopleura dioica]
          Length = 604

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/362 (27%), Positives = 179/362 (49%), Gaps = 3/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E + + G+++ T +Q   +   L  +DV+  AQTGSGKT  F   +   +  + 
Sbjct: 236 FPDRLLERIRKVGFLDPTPIQSTAIPQILAGRDVIGIAQTGSGKTAGFVWPIIYHVTKQR 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P+AL +APTREL  Q+  E+         + V +C GGV+++ + ++L+ G 
Sbjct: 296 P-LKYGDGPMALIMAPTRELCQQLYAEVRKFAKNYDSIRVGICFGGVNMYEQGKELKMGV 354

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL DH++     +S    + LDEAD ML+LGF   +  I +     ++ L F
Sbjct: 355 EILVATPGRLIDHVKKGNTELSKCTIICLDEADRMLELGFEPQVRSICNHVRPDKQCLFF 414

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA     D V++      + + ++     ++    +   ++  +    + 
Sbjct: 415 SATFKKVIERLATEVLNDPVKLTQGQIGQVNENVTQNFKILGQDQKLQWLLGNIVQLNSV 474

Query: 246 NA-IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF + +A      + L +  F+   + G++ Q ER++ ++  +  +    IATDVA
Sbjct: 475 GSLLVFVTRKADCVTVHEELKKSGFKTGVIHGDMHQAERNDVIKAFKRQQLATLIATDVA 534

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  ++ VI+ + + N +  +HR GRT RAG  G ++ ++       A  + R   
Sbjct: 535 ARGLDISHIKTVINYDPARNYDTHVHRVGRTARAGNTGTAISLLTPQDSEYAGIVLRSIE 594

Query: 365 VS 366
            +
Sbjct: 595 TT 596


>gi|237798870|ref|ZP_04587331.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021724|gb|EGI01781.1| ATP-dependent RNA helicase SrmB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 445

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 105/372 (28%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E  +V  T VQ A +   L+ +D+ V+AQTGSGKT AF L + + L+   
Sbjct: 7   LHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILNRLI--- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q  +E+E     T V   +  GG     +   L+    
Sbjct: 64  GPAKVRVDIRAVILLPTRELAQQTLKEVERFSQFTFVKAGLITGGEDFKVQAAMLRKVPD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGRL + +    L++ H++ +VLDEAD MLD+GF +D+E +      + + ++FS
Sbjct: 124 ILIGTPGRLLEQLNAGNLDLKHVEVLVLDEADRMLDMGFSEDVERLAGECAGREQTMLFS 183

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT   A     + K  +        +                    ++  +  +L     
Sbjct: 184 ATTGGAGLREMIGKVLKDPQHLQVNSVSELASGTRHQIITADHNVHKEQVLNWLLANETY 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI+F +T+A   R    L    ++   L G+  Q++R  A+  ++ G A++ +ATDVA
Sbjct: 244 QKAIIFTNTKAMADRLYGRLVALEYKAFVLHGDKDQKDRKAAIDRLKQGGAKIMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++V++ ++  + ++ +HR GRTGRAG  G+++ +I          + R   
Sbjct: 304 ARGLDVEGLDMVVNFDMPRSGDDYVHRVGRTGRAGSDGLAISLICHGDWNLMSSVERYLK 363

Query: 365 VSVVWEPAPSVE 376
            S        V+
Sbjct: 364 QSFERRVIKEVK 375


>gi|195395963|ref|XP_002056603.1| GJ11034 [Drosophila virilis]
 gi|194143312|gb|EDW59715.1| GJ11034 [Drosophila virilis]
          Length = 817

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 186/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 303 ITSFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPI 362

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 363 LNQMYEHGLSAPPQSNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 422

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 423 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 482

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 483 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 542

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 543 VYDQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 602

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR 
Sbjct: 603 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRM 662

Query: 339 GRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
           G  G++        +N+      L  E    + 
Sbjct: 663 GNLGVATSFFNDKNRNICSDLLELLIETKQEIP 695


>gi|330923108|ref|XP_003300102.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
 gi|311325897|gb|EFQ91780.1| hypothetical protein PTT_11258 [Pyrenophora teres f. teres 0-1]
          Length = 516

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/394 (29%), Positives = 190/394 (48%), Gaps = 15/394 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + +A     + N T +Q   +   L  +DV+  A+TGSGKT AF L + 
Sbjct: 86  KTFADLGIREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPIL 145

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL   ++  P      L +APTRELA Q+ ++++ L +   V  A  +GG+ +  +  
Sbjct: 146 QSLL---EKPQPLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAI 199

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH+      ++ HLK +VLDEAD +LDL F   ++ IL   P+
Sbjct: 200 ALSKRPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR 259

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +   L  +   S          Q        +S ++  S +  R   +    +D  ++
Sbjct: 260 EGRHTYLFSATMSSKVENLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDLYLI 319

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +     I+F  T     R   +L    F  + L G+LSQ  R  AL   +     
Sbjct: 320 HLLNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRD 379

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P ++L+++ +L S+ +  +HR GRT RAG+ G +V  + Q      
Sbjct: 380 ILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIW 439

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRI 386
            R+       +  +     EA+   D    AQR+
Sbjct: 440 LRIEHALGKKIPEQTFDKDEAMVYMDRVSEAQRV 473


>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
 gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/418 (27%), Positives = 199/418 (47%), Gaps = 8/418 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 142 NLSRPLLRACEALGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFR 201

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQV   +E +   T +   + +GG+S   +   L++  
Sbjct: 202 PKRI---LAIRVLILTPTRELAVQVHSMIEKIAQFTDIRCCLVVGGLSTKVQEASLRSMP 258

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ ++
Sbjct: 259 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKRRQTML 318

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L K      +R++     ++ + +         +   +++  ++ +   
Sbjct: 319 FSATMTEEVDMLIKLSLTKPLRLSADPSAKRPAALTEEVLRLRRMREVNQEAVLLALCSK 378

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+F  T+ +  R   +     F+   L G L+Q +R +AL++ R       IAT
Sbjct: 379 TFTSKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQAQRLDALELFRKQEVDFLIAT 438

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+     +  + +HR GRT RAGR+G +V  +  N +   + + +
Sbjct: 439 DVAARGLDIIGVQTVINYACPRDLTSYIHRVGRTARAGREGYAVTFVTDNDRSLLKAIAK 498

Query: 362 EANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            A   +          I+  +  + +      +   + +E+ +    +     E + A
Sbjct: 499 RAGSKLRSRIVAEQSIIKWSQMIENMENQVADVLQQEREERAIRKAEMEATKAENMIA 556


>gi|307548813|dbj|BAJ19133.1| vasa [Misgurnus anguillicaudatus]
          Length = 644

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 172/361 (47%), Gaps = 10/361 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + + + GY   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 200 IMTFDEAGLCESLNKNVVKSGYTKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 259

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+ +     +FS    P A+ +APTREL  Q+  E       T V   V  GG +  
Sbjct: 260 LQRLMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTNTG 319

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
              R++  G +++ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+  ++ S
Sbjct: 320 YTIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVAS 379

Query: 176 SPKKRRMLMFS-----ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                +    +               A   + D + + +       SD++   + V    
Sbjct: 380 PGMPSKEDRQTLLFSATYPEDIQRLAADFLKVDYIFLAVGVVGGACSDVEQSIIQVTQFS 439

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 440 KREQLLELLRTTGNERTMVFVGTKRSADFIATFLCQEKIPTTSIHGDREQREREKALSDF 499

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+  ++ V++ +L S+ +  +HR GRTGR G  G +V     
Sbjct: 500 RTGQCPVLVATSVAARGLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFDP 559

Query: 351 N 351
            
Sbjct: 560 E 560


>gi|254229918|ref|ZP_04923321.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394827|ref|YP_003286681.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151937554|gb|EDN56409.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262338421|gb|ACY52216.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 402

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/358 (29%), Positives = 182/358 (50%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+   GY   TS+Q+  +   LR  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +E       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRARAIILTPTRELALQVHQSIEAYGKNLPLRSMAMFGGVDYAPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF D I+ I+D  P+  + L+FS
Sbjct: 126 IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDAIDKIVDCMPEHVQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAKN   D   + IA  +   S+I      V    + + + ++L+ +    
Sbjct: 186 ATLSNPVRDLAKNAIIDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHMLKENDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 VLVFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+ +L +VI+ +L    +  +HR GRTGRAG +G ++ ++ ++  +    +     
Sbjct: 306 GIDIDNLPVVINYDLPYPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMIESRLG 363


>gi|153938593|ref|YP_001391335.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152934489|gb|ABS39987.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319364|gb|ADF99741.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 376

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +       +A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPD------INAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGM 354

Query: 359 LFREANVSVVWEPAPSVEA 377
           + RE    +  +   + + 
Sbjct: 355 IEREIKFKIPRKTLTNSKE 373


>gi|149757285|ref|XP_001503455.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 isoform 1
           [Equus caballus]
          Length = 483

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/484 (26%), Positives = 211/484 (43%), Gaps = 35/484 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRM 182
           +V+ TPGRL DH       +I  ++ +VLDEAD +L+ G  D   D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSSTFSIKKIRFLVLDEADRLLEQGCTDFTVDLEAILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHQDWSIIIFTNTCKTCQILCMMLRKFGFPAVALHSTMRQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKMVDVL--- 407
           +  +    +         +++E D  +IL        +  + L++    EKK ++     
Sbjct: 363 IEEQIKKKLEEF------SVKEADVLQILTQVNVVRRECEIKLEAANFGEKKEINKRKQL 416

Query: 408 -LAKHDPEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            L   DP+  A   A   +I +      E++          R     R       +R   
Sbjct: 417 ILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEQALQRQKASRADHRGRPPGARPEARSAP 476

Query: 464 KGSS 467
             + 
Sbjct: 477 APTQ 480


>gi|332244020|ref|XP_003271168.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Nomascus
           leucogenys]
          Length = 649

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 187/390 (47%), Gaps = 7/390 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L 
Sbjct: 248 FQCYPE-VMETIKKAGFPKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLD 306

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ 
Sbjct: 307 LQPTLKGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRK 365

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 366 GVDIIIATPGRLNDLQMNNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 425

Query: 184 MFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT             ++  +      +    S +    ++    ++ + +   L+  
Sbjct: 426 MTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQNM 485

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            +    IVF S +A V   +  L      + +L G+  Q++R  AL+  + G+ R+ IAT
Sbjct: 486 SSTDKVIVFVSRKAVVDHLSSDLILGNISIESLHGDREQRDREKALENFKTGKVRILIAT 545

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     
Sbjct: 546 DLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELIN 605

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +   AN S+  E     E  +    +R ++
Sbjct: 606 ILERANQSIPEELVSMAERFKAHQQKREME 635


>gi|227824325|ref|ZP_03989157.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
 gi|226904824|gb|EEH90742.1| DEAD-box ATP-dependent RNA helicase ydbR [Acidaminococcus sp. D21]
          Length = 444

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + E L + G    T VQE  +   L+ +DV+  AQTG GKT++F + L + +    
Sbjct: 40  IAPSLVERLHQTGKDIPTPVQERAIPALLQGRDVICRAQTGVGKTLSFVVPLFTKI---- 95

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL ++PTRELA Q   E++ L   T V V    GG     ERR L N A+
Sbjct: 96  --TEVKTFVQALILSPTRELAQQTAGEIKKLADGTPVRVLAVSGGKDYDEERRKLGNKAN 153

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGRL DH+R    ++  +  +VLDE DEML  GF +DIE +L   P+  + +M S
Sbjct: 154 VLVGTPGRLLDHLRKGNTSLGGITYLVLDEVDEMLRQGFGEDIETLLSLMPQPHQTMMCS 213

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K   K+   ++I  +    S I    + V+   ++ A+  I+       
Sbjct: 214 ATLDEEVRKLGKMITKNPRLIDIDPKEATASTIHQVCIKVSEDHKEEALQTIIDRCNPFL 273

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC ++         L    F    L G++SQQ+R  A++  R  + ++ +A+D+AAR
Sbjct: 274 MLVFCKSKERAIEVYDWLYGKGFNADVLHGDMSQQKRRQAMERFRKAKTQILVASDIAAR 333

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V++ ++  +P+  +HR GRTGRAG +G ++     +  R    L  +  ++
Sbjct: 334 GLDVEGVTQVVNFDIPHDPDWYVHRIGRTGRAGNEGEAITFYTADETRWLTHLEDKLGIT 393

Query: 367 VVWEPAP------SVEAIRERDAQ 384
           +  +         +V+ +R +  +
Sbjct: 394 LERQNLAGEKVRRTVKPVRPKKKR 417


>gi|114563961|ref|YP_751475.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335254|gb|ABI72636.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 423

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 194/363 (53%), Gaps = 2/363 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++ +A+++ GY   T VQ+A++   L  +DVL SA+TG+GKT AF L L S L+ ++
Sbjct: 8   LPPLLLDAVNQSGYQTATPVQQAVIPLALDGRDVLASAETGTGKTAAFALPLLSHLMNQD 67

Query: 67  DR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                PA+   AL + PTRELA+Q+ + L        +      GG S++ +R+ L+ G 
Sbjct: 68  HSDLLPANRLRALIMTPTRELAIQIEQNLVKYSQFINLTSLAVYGGASINPQRKALEQGI 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +     ++ + +MF
Sbjct: 128 DILVATPGRLFDIIGQHELDLSFVTHLVIDEADRMLDLGFVKDIEKVKRLIARQHQTMMF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  + TLA     +   V++ ++    + +     +     +   +  ++  H  +
Sbjct: 188 SATFSEDVKTLAAKMLNNPEYVHVETQTTAANVVQQVYQVD-TRRKAELLSELIGKHNWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S + +     + L+    +     G+ SQ  R+ AL+  + G+ RV IATD+AA
Sbjct: 247 QVMVFTSRKETADHLYRELSLDGIKSSVFHGDKSQGARNRALEEFKTGQLRVLIATDLAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ EL    E+ +HR GRTGRAG  G ++ ++          + +    
Sbjct: 307 RGLDIQALPRVINFELPEECEDYIHRIGRTGRAGLGGEAISLVSPQELELLGAIEQLIEQ 366

Query: 366 SVV 368
           S+ 
Sbjct: 367 SLP 369


>gi|330504959|ref|YP_004381828.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328919245|gb|AEB60076.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 447

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 188/365 (51%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L++  Y   T VQ   +   L+ +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRTLADLDYKTPTPVQSQAIPTVLKGRDLMAAAQTGTGKTAGFALPLLQRLTLEGPQ 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + +++  AL + PTRELA QV +  +       +      GGVS++ +   L+ G  ++
Sbjct: 70  VA-SNSVRALVLTPTRELAEQVLQSFQAYGQHLPLTSYAVYGGVSINPQMMKLRKGVDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ ++LDEAD MLDLGF  +++ +  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLYRQNAVKFSQLQTLILDEADRMLDLGFARELDELFSALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S AI  +A    +D + V ++  N     +    + V    +    +++L+       +
Sbjct: 189 FSDAIRQMAGELLRDPLSVEVSPRNAAAKTVKQWLIPVDKKRKSELFLHLLQVKRWGQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V +  + L        ++ G+  Q  R  AL+  + G  ++ +ATDVAARG+
Sbjct: 249 VFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L  N E+ +HR GRTGRAG  G ++ ++  +   +   +       + 
Sbjct: 309 DIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLVCADEVDQLAAIENLTQQLIK 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RVDEP 373


>gi|308048143|ref|YP_003911709.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307630333|gb|ADN74635.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/447 (27%), Positives = 201/447 (44%), Gaps = 13/447 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   T +Q+  +   +  KD+L S++TGSGKT+AF L     L+   
Sbjct: 8   LDKRLLATVDHLGFAEATEIQQKAIPTAIAGKDLLASSRTGSGKTLAFLLPAMQRLI--R 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L +APTRELA QV  +L  + A T     + +GG   +++ + L    H
Sbjct: 66  SKPLSKRDPRVLILAPTRELAKQVYGQLRLVVANTSYKSLLILGGEDFNQQSKALARDPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGRL DH+    L +  L+ ++LDEAD MLDLGF D ++ I    D   ++  M 
Sbjct: 126 FVVATPGRLADHLEHGHLYLHGLEMLILDEADRMLDLGFADQLQAIHKAADHRKRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      A+           +                 L  ++  +  +L    
Sbjct: 186 SATLDHAAVNQFGAQLLNNPTRIRIDSEAEIHSDIHHRMLFSDHLDHKEAQLKALLEKQD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R   +L+E  +  +ALSGEL+Q  RS  +Q    G+A++ I TDV
Sbjct: 246 FKQLILFTATRGDTDRLAVLLSEWGYSTLALSGELNQTARSQIMQDFAAGKAKILITTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  V++ +L  +PE  +HR GRTGRAG KG +  ++        ++L    
Sbjct: 306 ASRGLDIPQVSHVVNFDLPKHPEEYVHRVGRTGRAGAKGDAFSLVGPKDWPSFKKLEAFL 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
              + +E    +EA  +   ++  + P          KK          P K A   ++ 
Sbjct: 366 QQPLAFEAIEGLEAKFKGLVEKPKRGPAKAKPTARSGKKTG--------PAKRAPAKVKR 417

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDS 450
             AGL    +   +          D+S
Sbjct: 418 PVAGLRDIGDAPMMVKKKPVQPVDDES 444


>gi|119477648|ref|ZP_01617798.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449151|gb|EAW30391.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 441

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 193/374 (51%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ E GY   T++QE  +   L  +D+L ++QTG+GKT +F L +   L  E 
Sbjct: 8   LSDPLLQAVEELGYTKPTAIQEQTIPTILAGRDLLAASQTGTGKTASFILPVLQKLTGER 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +     L L   PTRELA+QV   +        +   V +GGV    +++ L +G  
Sbjct: 68  KRRAKRLRALVL--VPTRELAIQVENTIHQYGKYLSLRSMVMVGGVDAAPQKQGLIDGLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L    L+ ++LDEAD MLD+GF  DI  I++  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDMAHQRALYFDELEVLILDEADRMLDMGFIGDINKIIERLPTQRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  I  LAK    D + ++I + N     I    + V    +   + ++++ +    
Sbjct: 186 ATLSDEIRLLAKTAINDPIEISINATNATAPKISQWLITVDKDSKSALLSHLIKENQWTQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A+    SQ  R+  L   + G   + +AT +AAR
Sbjct: 246 ALIFIRTKHGAAKLVSQLEKRGIKAEAIHSGRSQAVRTQLLADFKSGNISLLVATGIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ DL+ V++ +L  + ++ +HR GRTGRAG  G +V ++ ++  +R   + R  N  
Sbjct: 306 GIDIDDLDRVVNYDLPDDDDDYIHRIGRTGRAGAIGEAVSLVSRDDFKRLCAIERRLNQL 365

Query: 367 VVWEPAPSVEAIRE 380
           +         A +E
Sbjct: 366 IERRIIDGFIAAKE 379


>gi|195109284|ref|XP_001999217.1| GI23184 [Drosophila mojavensis]
 gi|193915811|gb|EDW14678.1| GI23184 [Drosophila mojavensis]
          Length = 724

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 176/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 283 LPDYVLKEIRRQGYKAPTPIQAQGWPIAMSGANFVGIAKTGSGKTLGYILPAIVHINNQQ 342

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 343 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 401

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 402 IVIATPGRLIDFLSAGATNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 461

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 462 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEDKLKSLLSDIYDT 521

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 522 SENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 581

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 582 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 641

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 642 DVLREANQEI 651


>gi|195054323|ref|XP_001994075.1| GH22875 [Drosophila grimshawi]
 gi|193895945|gb|EDV94811.1| GH22875 [Drosophila grimshawi]
          Length = 799

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/393 (27%), Positives = 186/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 292 ITSFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPI 351

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P +          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 352 LNQMYEHGLSAPPQNNRQYSRRKQFPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 411

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 412 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 471

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 472 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTLLW 531

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 532 VYDQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 591

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR 
Sbjct: 592 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRM 651

Query: 339 GRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
           G  G++        +N+      L  E    + 
Sbjct: 652 GNLGVATSFFNDKNRNICSDLLELLIETKQEIP 684


>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 459

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 142/409 (34%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L E G+  +T +Q A L   L+ +DV   A+TGSGKT AFG+ 
Sbjct: 1   MTAFSTLTQLPASQLDNLREMGFDAMTPIQAAALPAILQGRDVRAQAKTGSGKTAAFGIG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV   L  L   T  +  + + G      
Sbjct: 61  LLQRIDNSQ------FHTQALVLCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++   L+++ L+ +VLDEAD ML++GFRDD+E I+  +
Sbjct: 115 QRDSLVHAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRMLEMGFRDDMEAIIGFT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    I +L++ YQ+DA+         +   I+ R + V+ S+R N + 
Sbjct: 175 PAARQTLLFSATWPDTIASLSERYQRDAL-AVATETEAELPAIEQRFIEVSASERTNLLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +     +AL G+L Q++R   L    +G  R
Sbjct: 234 ALLSQQQPTSCVVFCNTKRECDDIAAALNDRQISALALHGDLEQRDRERVLIRFANGSIR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARG+D+  L LV++  L+ +PE  LHR GRTGRAG  G++V  +  +   RA
Sbjct: 294 VLIATDVAARGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAGESGLAVSFVAADEMARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L      S+ W  A +++      A + L   +    I G  K  + 
Sbjct: 354 HALEDYLQQSLNWVAASTLKG----SAAKALPATMMTLCIDGGRKAKIR 398



 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDL 508
                +  G K K     ++  L   +G +   IG I + P  
Sbjct: 384 MMTLCIDGGRKAKIRPGDILGALTGEAGFSADQIGKIDLTPTH 426


>gi|225464928|ref|XP_002275011.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 412

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 190/373 (50%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +   N
Sbjct: 46  IKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSN 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q  + +  +     +    CIGG SV  + R L+ G H
Sbjct: 106 REV------QALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ S
Sbjct: 160 IVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLIS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D VR+ +  +      I    V +     + + + ++       
Sbjct: 220 ATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 280 QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    + +  + 
Sbjct: 340 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYST 399

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 400 QIDEMPMNVADLI 412


>gi|195130219|ref|XP_002009550.1| GI15175 [Drosophila mojavensis]
 gi|193908000|gb|EDW06867.1| GI15175 [Drosophila mojavensis]
          Length = 1229

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 188/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 545 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPALED 603

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 604 GDGAIAIIMAPTRELCMQIGKDIRKFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 663

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 664 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 723

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+   K  V V +   +    D++   V+++   +   ++ +L  +    +I
Sbjct: 724 FPRQMEALARRILKKPVEVIVGGRSVVCKDVEQHVVILSDEAKFFKLLELLGVYQETGSI 783

Query: 249 V-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           + F   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 784 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 843

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +   I     R A  + R   +S 
Sbjct: 844 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQSRYAGDVIRALELSG 903

Query: 368 VWEPA 372
              P 
Sbjct: 904 TPVPP 908


>gi|168067781|ref|XP_001785785.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662575|gb|EDQ49411.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 395

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 190/381 (49%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   +   G+   +++Q+  + P +  +D +  AQ+G+GKT    L +
Sbjct: 21  ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQAQSGTGKTSMIALTV 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              AL ++PTRELA Q  + +  +     V    CIGG S+  + 
Sbjct: 81  CQMIDIATREV------QALILSPTRELAAQTEKVILAIGDFMNVQAHACIGGKSIGEDI 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+ D I+ + L    +K ++LDE+DEML  GF+D I  +    P 
Sbjct: 135 RKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQIYDVYRYLPP 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 195 ELQVVLVSATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 255 LYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQKERDAIMAEFRSGTTRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 315 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRSDDIRILR 374

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 375 DIEQYYSTQIDEMPMNVADLI 395


>gi|157126121|ref|XP_001654546.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873390|gb|EAT37615.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 741

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 8/373 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+ + E + ++G+   + +Q       L+ +D++  AQTG+GKT+AF L     + 
Sbjct: 328 FHEYPE-LLEEIKKQGFAKPSPIQAQAWPVLLKGEDLIGIAQTGTGKTLAFLLPAFIHIE 386

Query: 64  AEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +   R      P  L +APTRELA+Q+ +E+ + Y    +      GG     +   ++
Sbjct: 387 GQPVPRGEARGGPNVLVMAPTRELALQIEKEV-FKYQFRDIKAICLYGGGDRRTQINKVK 445

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++ TPGRL D +    ++I+ +  +VLDEAD MLD+GF   I  +L      R+ 
Sbjct: 446 GGVEIIIATPGRLNDLVAANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQT 505

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT  P +  LA++Y  + V+V + + +      +  +  ++   D+   ++N +  
Sbjct: 506 IMTSATWPPGVRRLAQSYMSNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYMRVMNFVTN 565

Query: 242 HGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            G     I+FC  +      +           +L G+  Q +R  AL+ ++ G  RV IA
Sbjct: 566 MGPSDKVIIFCGRKTRADDLSSEFVLSGINCTSLHGDREQADREQALEDIKSGDVRVLIA 625

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TDVA+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G+S+    +          
Sbjct: 626 TDVASRGLDIEDISHVVNYDFPRNIEEYVHRVGRTGRAGRSGVSLSFFTRGDWAVASDLI 685

Query: 358 RLFREANVSVVWE 370
           ++  EA+  V  E
Sbjct: 686 KILEEADQEVPEE 698


>gi|261211120|ref|ZP_05925409.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
 gi|260839621|gb|EEX66232.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC341]
          Length = 460

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNAMMIKVEATHDTSSIRQYFYKVDGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVKNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +V    P   A       R     +    I G +K  V 
Sbjct: 364 IEIVPSSLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D     S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIEIVPSSLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P  ++V V     
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRSYVAVQKKIA 437


>gi|161723024|gb|ABX76969.1| Vasa [Parhyale hawaiensis]
          Length = 676

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 185/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    +  ++   +   GY   T +Q   +   +  +D++  AQTGSGKT AF L +
Sbjct: 239 IDTFGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPI 298

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +LA     S + +    P A+ +APTRELA+Q+  E       + V   VC GG S+
Sbjct: 299 LHGILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASM 358

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + + R LQNG  ++V TPGRL D +    ++ S +K +VLDEAD MLD+GF  DIE I++
Sbjct: 359 NSQYRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVKYLVLDEADRMLDMGFIGDIEKIVN 418

Query: 175 SSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                         FSAT    I TLA N+ ++ V   + +    ++D+    + V    
Sbjct: 419 HQTMPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQ 478

Query: 231 RD---NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +     + +     +G    ++F  T+ +      +L+       ++ G+  Q +R  AL
Sbjct: 479 KREVLMSKIEEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEAL 538

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + G   + +AT VAARG+D+  +  VI+ +L    +  +HR GRTGR G KG +V  
Sbjct: 539 AQFKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVSF 598

Query: 348 IPQNMQ----RRAERLFREANVSVVW 369
             +       +   ++  +A+  V  
Sbjct: 599 YDEEQDGALAKNLVKILTDASQEVPE 624


>gi|330828264|ref|YP_004391216.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
 gi|328803400|gb|AEB48599.1| ATP-dependent RNA helicase SrmB [Aeromonas veronii B565]
          Length = 407

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/387 (28%), Positives = 192/387 (49%), Gaps = 9/387 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  +   +  AL+E G+   T++Q+ +L P L  +D+L SA TG+GKT +F L   
Sbjct: 3   QSFDDFDLHPALNRALAEMGFTRPTTIQQMVLEPALDGRDILASAPTGTGKTASFLLPAL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R  P    + L + PTRELA+QV    + L A T + +   IGGVS   +  
Sbjct: 63  QHLL-DFPRRKPGPCRM-LILTPTRELALQVTAHAKALAAHTNLSIETIIGGVSHEEQLP 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVV TPGRL ++I  +      ++ +VLDEAD MLD+GF  D+  I+  +  +
Sbjct: 121 ALTKTTDIVVATPGRLLEYIEKEEFESHDIEVLVLDEADRMLDMGFIKDVNRIVAEARYR 180

Query: 180 RRMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  ++FSAT+  A       +  +           + +     +  +    + +   + +
Sbjct: 181 KHTMLFSATLEGAGLEKFANEILKDPVELHAEPPRSERRPITQWIHLADDAAHKLALLTH 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+    + AI+F  TR  ++  +  L         + GE+ Q +R  +++   +G    
Sbjct: 241 ILKDPETQKAIIFVKTRERLAELSGQLQAAGISCAWIRGEMEQSKRIESIRKFHEGEVPF 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGIDLP++  VI+ ++    +  +HR GRTGRAG +G ++ ++  +      
Sbjct: 301 LIATDVAARGIDLPNVSHVINYDMPYGADVYVHRIGRTGRAGNRGCAISLVEAHDMAMVA 360

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ 384
           ++ R     +       ++ +R +  +
Sbjct: 361 KIERYTEERLKRRV---IDELRPKHKE 384


>gi|310798110|gb|EFQ33003.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 607

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 212/472 (44%), Gaps = 15/472 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +    A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 134 NLSEKTMTAIKEMGFTKMTEIQRRGIPPLLSGKDVLGAAKTGSGKTLAFLIPAVEML--H 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   LQ G 
Sbjct: 192 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEADKLQKGV 251

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +LK++++DEAD +L++GF D++  I+   PK  R  M 
Sbjct: 252 NLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDDRQTML 311

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       V V+   ++    +++   V+     R   + + L+ 
Sbjct: 312 FSATQTTKVEDLARISLRPGPLYVNVDEQKQHSTVENLEQGYVICDADKRFLLLFSFLKR 371

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 372 NLKKKVIVFFSSCNSVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 431

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +       L 
Sbjct: 432 DVAARGLDIPAVDWIVQVDPPDDPRDYIHRVGRTARGANSKGRSLMFLQPSEVGFLTHL- 490

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------DP 413
           +EA V VV    P+ + A  +   ++++    +L+    D  +      A H      D 
Sbjct: 491 KEARVPVVEFDFPANKIANIQSLLEKLISQNYYLNKSAKDGYRSYLHAYASHSLRTVFDV 550

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            K+    +         P     V     RD+     RA+           G
Sbjct: 551 NKLDLAKVAKSFGFPTPPRVDITVGASMSRDKKTQGRRAYGSQPRQEHGTGG 602


>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
 gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
          Length = 1201

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 194/423 (45%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY   TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 581 LDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRP-LEN 639

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  DL+ GA I+V T
Sbjct: 640 MEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCT 699

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    ++ ++FSAT
Sbjct: 700 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSAT 759

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     + +   +          +     +
Sbjct: 760 FPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNLYSTDEN 819

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   +       + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 820 EDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 879

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 880 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 939

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 940 LKQSGQSVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 988

Query: 418 AGF 420
           A  
Sbjct: 989 ARM 991


>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
           oryzae RIB40]
 gi|91207409|sp|Q2U2J6|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae]
          Length = 1186

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 194/423 (45%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY   TS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 566 LDVIDRLGYSAPTSIQAQAIPAIMSGRDVIGVAKTGSGKTIAFLIPMFRHIKDQRP-LEN 624

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  DL+ GA I+V T
Sbjct: 625 MEGPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCT 684

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    ++ ++FSAT
Sbjct: 685 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSAT 744

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     + +   +          +     +
Sbjct: 745 FPRNMEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLGNLYSTDEN 804

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F   +       + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 805 EDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 864

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 865 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 924

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P P          Q+++    FL+ ++  ++K          L + D E+ A
Sbjct: 925 LKQSGQSVPEP---------VQKMVDS--FLEKVKAGKEKASASGFGGKGLERLDQERDA 973

Query: 418 AGF 420
           A  
Sbjct: 974 ARM 976


>gi|28899776|ref|NP_799381.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839108|ref|ZP_01991775.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|260362509|ref|ZP_05775435.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|260877189|ref|ZP_05889544.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|260897233|ref|ZP_05905729.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|260901365|ref|ZP_05909760.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|32363280|sp|Q87KH5|RHLB_VIBPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28808028|dbj|BAC61265.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747404|gb|EDM58368.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ3810]
 gi|308088928|gb|EFO38623.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus Peru-466]
 gi|308094139|gb|EFO43834.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AN-5034]
 gi|308107202|gb|EFO44742.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus AQ4037]
 gi|308112656|gb|EFO50196.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus K5030]
 gi|328471326|gb|EGF42225.1| ATP-dependent RNA helicase RhlB [Vibrio parahaemolyticus 10329]
          Length = 437

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 194/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LQPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EHEGRQPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +    +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + E DA  ++QD
Sbjct: 376 EHTIP---------VSEYDASALIQD 392


>gi|71409597|ref|XP_807135.1| nucleolar RNA helicase II [Trypanosoma cruzi strain CL Brener]
 gi|70871069|gb|EAN85284.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 633

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 197/437 (45%), Gaps = 21/437 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +  
Sbjct: 52  FSDFDLLPNTV-EALKSQGITTLFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVE 110

Query: 61  TL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L      N++      P A+   PTRELA+QV   +  +    G VV    GGV+   +
Sbjct: 111 KLARTTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISK--GFVVTALYGGVAYSTQ 168

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF------ 171
            R L +G  +VV TPGR  D +  + L    +K V LDEAD MLD+GF+DDIE       
Sbjct: 169 ERALYSGVDVVVATPGRAKDFLEKRTLCFDRVKVVCLDEADHMLDIGFKDDIELLLQKVA 228

Query: 172 ------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                   + + +               + + +N +   +                R   
Sbjct: 229 EQNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRNKEFIDMVGQGTMRAANTIKFYRRKCH 288

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            +      A +  +        +VF +T+      +    +   Q +   G++ Q++R +
Sbjct: 289 FSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCL--HGDMQQEQRES 346

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V
Sbjct: 347 TMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCV 406

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMV 404
            +     +   ER+ R A +     PAP+ + I    A+   +D   ++ S      +  
Sbjct: 407 LLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMEQA 466

Query: 405 DVLLAKHDPEKIAAGFL 421
             LL   D  +I A  +
Sbjct: 467 AELLKDADATEILASAI 483


>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
 gi|91207410|sp|Q4IP34|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
          Length = 1227

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 185/383 (48%), Gaps = 11/383 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY   T +Q   L   +  +DV+  A+TGSGKTVAF L +   +  +      
Sbjct: 609 LDVVDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHI-KDQPPLKD 667

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELAVQ+ ++ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 668 TDGPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEIIVCT 727

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D     +G+  N+  +  VVLDEAD M D+GF   +  I  +    R+ ++FSAT
Sbjct: 728 PGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSAT 787

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGA 244
           +   I +L K   K+ + V +   +    +I+    +     + + ++ +          
Sbjct: 788 MPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYDRDED 847

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +       K L    +  +++ G   Q +R + +   + G   + IAT VA
Sbjct: 848 ARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVA 907

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G++V  +    +  A  + +   
Sbjct: 908 ARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQENCAPGIAKALE 967

Query: 365 VSVVWEPAPS-VEAIRERDAQRI 386
            S   +P P  +  +R+   +++
Sbjct: 968 QS--GQPIPDRLNEMRKAHREKV 988


>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
 gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
          Length = 393

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 172/375 (45%), Gaps = 6/375 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     +   L++ G+   + +Q   + P L  KDVLV +QTGSGKT AF L +   
Sbjct: 22  FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L        PA  P AL + PTRELA Q       L  +  +   V  GG S  ++ + +
Sbjct: 82  LTEAG----PAPGPRALILEPTRELAAQTAAVCRQLGRRLSLKTRVICGGTSREQQVQSV 137

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +G  I+V T GRL D +    L + HL  +VLDEAD +LD  F   +  +    P +  
Sbjct: 138 SDGVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLLDEDFSASMTALTPYFPDQPP 197

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +F +   P                   +          +  +    D     V  L  
Sbjct: 198 QTVFCSATLPEPVMDLAKRVTRNPVRVEIAAESFTPKNIRQRAIFVEKDDKPETVARLLK 257

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H    +IVF  T+ +V    K L  H  +V  L G+ +Q  R+ AL + R GR  V + T
Sbjct: 258 HFEGRSIVFARTKNTVDALAKTLRRHNLRVETLHGDRTQGARNKALDLFRQGRIPVLVTT 317

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+PD++LVI+ ++   PE  +HR GRT RAGRKG++  +I  + +     + +
Sbjct: 318 DIASRGLDIPDVDLVINMDMPETPEAYVHRIGRTARAGRKGVAFSLINIDERTFLRDVEK 377

Query: 362 EANVSVVWEPAPSVE 376
                V      S++
Sbjct: 378 HIGYRVRIATEDSLD 392


>gi|238491700|ref|XP_002377087.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
 gi|220697500|gb|EED53841.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus flavus
           NRRL3357]
          Length = 676

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 189 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 248

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                   +PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 249 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 308

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   
Sbjct: 309 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 368

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 369 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 428

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 429 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRER 488

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 489 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 548

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 549 ATAFFNRGNRGVVRDLIDLLKEAHQEVP 576


>gi|163749401|ref|ZP_02156649.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330810|gb|EDQ01737.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 430

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 189/378 (50%), Gaps = 7/378 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F   ++  ++ +A+ E GY  LT VQ  ++   L   D++  A+TG+GKT +F L L
Sbjct: 1   MK-FAALDLNPLLIDAIDECGYQQLTQVQSEVIPVALSGADLMACAETGTGKTASFALPL 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL E   +        L + PTRELA+QV   +      T +      GG +++ +R
Sbjct: 60  LERLLKEEQEYPCLRG---LILTPTRELAIQVAANITRYGQFTSLKTLAVYGGANMNPQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +   GLN+S + ++++DEAD MLD+GF  DIE +      
Sbjct: 117 KALNAGVDILVATPGRLFDFVGQHGLNLSDVTSLIIDEADRMLDMGFVRDIERVKSLVAS 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +     FSAT S  +  LA+     + +    ++ R  + ++    LV    +   +  +
Sbjct: 177 QHVTHFFSATYSDQVKLLAEKM-LISPQWINVAQTRSAASVEQEVYLVDKRRKAELLSEL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF +T+ S       L+    +     G+ +Q  R+  L+  + G+ RV 
Sbjct: 236 IGRNNWQQVLVFATTKESAEHLNSELSLDGIKCGVFHGDRTQGARNRTLEEFKAGKLRVM 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +  + +   + 
Sbjct: 296 VATDVAARGIDIQALPLVINLELPYGAEDYIHRIGRTGRAGLTGRAISFVCPSDEEMLDE 355

Query: 359 LFREANVSVVWEPAPSVE 376
           +     + +     P  E
Sbjct: 356 IESLIELKLPRIVLPGYE 373


>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
          Length = 622

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G ++ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 479 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 538

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 539 ACDESVLMDLKALLLEAKQKVPP 561


>gi|304319730|ref|YP_003853373.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
 gi|303298633|gb|ADM08232.1| hypothetical protein PB2503_00757 [Parvularcula bermudensis
           HTCC2503]
          Length = 460

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 132/393 (33%), Positives = 196/393 (49%), Gaps = 19/393 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I EAL+E GY + T +Q   +   LR +DVL  AQTG+GKT +F L +  
Sbjct: 15  TFSELGLDTKILEALTESGYTHPTPIQADAIPEALRGRDVLGIAQTGTGKTASFVLPVIH 74

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R     +   L +APTRELA QV  + E       + +A+ IGGVS   +   
Sbjct: 75  RLARGRARARMPRS---LILAPTRELAAQVSEQFEKYGKNHKLSMALLIGGVSFADQDAK 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++ TPGRL DH     L ++ L+ +V+DEAD MLD+GF  D+E I   +P  R
Sbjct: 132 LTRGVDVLIATPGRLLDHHERGKLLLTGLEVMVVDEADRMLDMGFIPDLERIFKLTPFTR 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS----DRDNAIV 236
           + L FSAT+ P I  L   +     R+ +A        I  R   +        R     
Sbjct: 192 QTLFFSATMPPEIQRLTDQFLSAPARIEVAKPATTAKTITQRIARLPSGEDKLKRAALRH 251

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +      KN I+FC+ + +V    K L EH F    + G+L Q  R+  LQM RDG  +
Sbjct: 252 LVETAENLKNGIIFCNRKKNVDVIAKSLQEHGFDARPIHGDLPQSFRTETLQMFRDGGLK 311

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+DVAARG+D+PD+  V +  +  N ++ +HR GRTGRAGR G +V ++  +  +  
Sbjct: 312 LLVASDVAARGLDIPDVSHVFNFSVPINADDYVHRIGRTGRAGRLGHAVMLVTPDDGKAF 371

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           + + +             ++ I E D   +L D
Sbjct: 372 DAVLKVTG----------LDKIEEHDISALLDD 394


>gi|288940348|ref|YP_003442588.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288895720|gb|ADC61556.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 683

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 135/494 (27%), Positives = 205/494 (41%), Gaps = 60/494 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   L+E G+   T +Q   L   L+  D+   AQTG+GKT AF +AL   LL E 
Sbjct: 16  LDPRILAGLAEAGFTQCTPIQAETLPIALQGHDIAGQAQTGTGKTAAFLVALMQRLLHEP 75

Query: 67  DRFSPASA------------------------------------------PLALAIAPTR 84
               P SA                                          P AL +APTR
Sbjct: 76  PEAMPESAAAPETPVSADGSPETESLDPANALEAESEPESAPAPARRRRGPRALVLAPTR 135

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
           ELAVQ+ ++   L   TG+   V  GG    ++R +L  G  I++GTPGRL D+ +    
Sbjct: 136 ELAVQIHKDTLALAKHTGLRSTVVYGGTGYQQQRDELAAGVDILIGTPGRLIDYYKQHVF 195

Query: 145 NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LMFSATISPAITTLAKNYQK 202
           ++  ++ VVLDEAD M DLGF  DI ++    P   +   ++FSAT+S  +T LA  +  
Sbjct: 196 DLKRIEVVVLDEADRMFDLGFIKDIRYLFRQMPPVEQRLGMLFSATLSYRVTELAYEHMN 255

Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
               V I +E      +     + A  ++   ++ ++R       IVF +T+    R   
Sbjct: 256 HPRLVKIETEQVTADRVRQVCYMTANEEKIPLLLGLIRGWPDGRIIVFVNTKREADRVWG 315

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            L  +      LSG++ Q +R   L+   +G   V + TDVAARG+ +PD+  V++ +L 
Sbjct: 316 YLQGNGIDTAVLSGDVPQPKRLKLLRDFTNGTLPVLVGTDVAARGLHIPDVTHVVNYDLP 375

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            +PE+ +HR GRT RAG  G +V  + +        + +   + V  EP           
Sbjct: 376 EDPEDYVHRIGRTARAGAAGDAVSFVCETYAFCLLDIEQYIGIKVPVEPV---------- 425

Query: 383 AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSG 442
                 DP  L  +    +   D    +   +       R    G       +     SG
Sbjct: 426 ------DPALLAEVDPRSRIRPDRADREERRDGRDKRGGRERGEGRGVQGRSSERDGASG 479

Query: 443 RDRFRDDSRAFKVG 456
           RDR     R     
Sbjct: 480 RDRRPGRERPAPRS 493


>gi|189205104|ref|XP_001938887.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187985986|gb|EDU51474.1| ATP-dependent rRNA helicase rrp3 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 517

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/394 (29%), Positives = 191/394 (48%), Gaps = 15/394 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + +A     + N T +Q   +   L  +DV+  A+TGSGKT AF L + 
Sbjct: 87  KTFADLGVREELCDACENLKFKNPTPIQTQAIPLALEGRDVIGLAETGSGKTAAFVLPIL 146

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL   ++  P      L +APTRELA Q+ ++++ L +   V  A  +GG+ +  +  
Sbjct: 147 QSLL---EKPQPLFG---LILAPTRELAYQIAQQVDALGSIINVKCATLVGGMDMVPQAI 200

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH+      ++ HLK +VLDEAD +LDL F   ++ IL   P+
Sbjct: 201 ALSKRPHIVVATPGRLLDHLENTKGFSLKHLKYMVLDEADRLLDLDFGPVLDKILKVLPR 260

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +   L  +   S   +      Q        +S ++  S +  R   +    +D  +V
Sbjct: 261 EGRHTYLFSATMSSKVESLQRAALQNPVRVSISSSSHQVVSTLLQRYAFIPHKYKDLYLV 320

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +     I+F  T     R   +L    F  + L G+LSQ  R  AL   +     
Sbjct: 321 HLLNDNIGHPTIIFTRTVNETQRIAVLLRALGFGAIPLHGQLSQSARLGALNKFKSKSRD 380

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P ++L+++ +L S+ +  +HR GRT RAG+ G +V  + Q      
Sbjct: 381 ILVATDVAARGLDIPAVDLIVNFDLPSDSQTYVHRVGRTARAGKSGKAVSFVTQYDLEIW 440

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRI 386
            R+       +  +     EA+   D    AQR+
Sbjct: 441 LRIEHALGKKIPEQTFDKDEAMVYMDRVSEAQRV 474


>gi|148828072|ref|YP_001292825.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittGG]
 gi|189040031|sp|A5UI36|RHLB_HAEIG RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148719314|gb|ABR00442.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
          Length = 415

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ECGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|304415003|ref|ZP_07395797.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
 gi|304283089|gb|EFL91508.1| ATP-dependent RNA helicase specific for 23S rRNA [Candidatus
           Regiella insecticola LSR1]
          Length = 464

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 8/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+  GY ++T +Q A L   L+ KDV   A+TGSGKT AFG+ L   +  E 
Sbjct: 12  LPPKQLANLNALGYSSMTPIQAATLPAILKGKDVRAQAKTGSGKTAAFGIGLLDKIAVEQ 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA Q+ +EL  L   T  + +    GG S+  +   L +  
Sbjct: 72  ------FVTQALILCPTRELADQISKELRRLARFTQNIKILTLCGGQSIGCQLYSLVHAP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H VVGTPGR+ +H+R   L +++LK +VLDEAD MLD+GF D I+ I+D +PK R+ L+F
Sbjct: 126 HFVVGTPGRIQEHLRKHTLVLTNLKVLVLDEADRMLDMGFNDAIDNIIDYAPKTRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  ++   Q   +   + S  +  + I+          R   ++ IL+++   
Sbjct: 186 SATYPDSIEQISNRIQHQPL-SVVVSPQKNETAIEQLFYESTNEKRLPLLIKILKHYQPD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    R  + L      V+AL G+L Q ER        +   R+ +ATDVAA
Sbjct: 245 SCLVFCNTKLDCQRLYQALKSCQMSVLALHGDLDQHERDQVWVRFANHSCRILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L LV++ E++ +PE  +HR GRTGRAG  G +V +       RA  +      
Sbjct: 305 RGLDIKQLALVVNFEVAFDPEVYIHRIGRTGRAGIGGCAVTLCTPQEMHRALAIEDYLQT 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W     +      +    L   +   SI G  K  + 
Sbjct: 365 KLTWLSPEKINDTDGINNSEKLAAEMMTLSIDGGRKAKIR 404



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 19/56 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
            S          S+  G K K     ++  L   +G+    IG I      T+V +
Sbjct: 382 NSEKLAAEMMTLSIDGGRKAKIRPGDILGALTGEAGLAAVDIGKIDTFALHTYVAI 437


>gi|255711788|ref|XP_002552177.1| KLTH0B08998p [Lachancea thermotolerans]
 gi|238933555|emb|CAR21739.1| KLTH0B08998p [Lachancea thermotolerans]
          Length = 492

 Score =  189 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 209/461 (45%), Gaps = 15/461 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L     L   
Sbjct: 34  NLSPPTMKAIDKMGFTTMTQVQSRTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIEML--H 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + I PTRELA+Q+    + L         + IGG +  +E   L  G 
Sbjct: 92  SLKFKPRNGTGVIVITPTRELALQIFGVAKTLMEFHSQTFGIVIGGANRRQEADKLAKGV 151

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH    K     +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 152 NLLIATPGRLLDHLQNTKDFVFKNLKALVIDEADRILEIGFEDEMRQIVKILPSEERQTM 211

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   +      ++   V+     R   + + L+
Sbjct: 212 LFSATQTTKVEDLARISLRPGPLFINVDSEKQTSTADGLEQGYVVCDSDKRFLLLFSFLK 271

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +      + 
Sbjct: 272 RNQKKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGTLVC 331

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  N      R 
Sbjct: 332 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPNELGFL-RY 390

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A V +     PS + A  +   +++++    L  I  D  +      + H  + +  
Sbjct: 391 LKAAKVPLNEYEFPSNKIANVQSQLEKLIKSNYHLHQIAKDGYRSYLQAYSSHSLKTVYQ 450

Query: 419 ----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFK 454
                  ++ ++ G   P ++      SG+       +  +
Sbjct: 451 IDKLDLAKVAKSYGFPIPPKVNITIGASGKTPPSKKRKPSR 491


>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
 gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
          Length = 760

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 204/454 (44%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 191 NLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFR 250

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA QV   +E L   T +   + +GG+S   +   L++  
Sbjct: 251 PKRVP---AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 307

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  V+LDEAD +L+LGF  +I+ ++   PK+R+ ++
Sbjct: 308 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 367

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L K      VR+      ++ + +    V +  +   N     + +   
Sbjct: 368 FSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 427

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ I+F  T+ S  R   V      +   L G L+Q +R  AL++ +       IAT
Sbjct: 428 TFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 487

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+     + +  LHR GRT RAGR+G +V  +  + +   + + +
Sbjct: 488 DVAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 547

Query: 362 EANVS-----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +A        V  +P      + E+   +I          +   K  +++     D  K 
Sbjct: 548 KAGSQLKSRIVAEKPVAECAQLIEQLEGQISIIIREERVEREARKAEMEIAKESLDQGKS 607

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
            +G +   +A     +E           R +   
Sbjct: 608 TSGVISAKQAEDLRLKEKKRREHEKNLPRKKRRR 641


>gi|169602158|ref|XP_001794501.1| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
 gi|160706094|gb|EAT89163.2| hypothetical protein SNOG_03958 [Phaeosphaeria nodorum SN15]
          Length = 623

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 193/385 (50%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +   GY   T VQ+  +   +  +D++  AQTGSGKT  F   + + 
Sbjct: 130 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 189

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    P +            P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 190 AFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 249

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I 
Sbjct: 250 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 309

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I           R+ LMFSAT    I  LA+++ K+ + +++        +I  +   V
Sbjct: 310 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYV 369

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +D+ + +++IL  HGA  +++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 370 EDADKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKA 429

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++  
Sbjct: 430 LEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATA 489

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  V 
Sbjct: 490 FFNRGNRGVVRDLLDLLKEANQEVP 514


>gi|53804862|ref|YP_113487.1| DEAD-box ATP dependent DNA helicase [Methylococcus capsulatus str.
           Bath]
 gi|53758623|gb|AAU92914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Methylococcus
           capsulatus str. Bath]
          Length = 453

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 138/381 (36%), Positives = 198/381 (51%), Gaps = 6/381 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +  A+SE GYV+ T +Q   +   L   D+L +AQTG+GKT  F L +   LL E 
Sbjct: 17  LAQPLLRAVSEAGYVHPTPIQAQAIPLLLAGGDLLAAAQTGTGKTAGFTLPILHRLL-EK 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L +APTRELA QV   +E       +   V  GGV ++ + R L  G  
Sbjct: 76  QAPRRPRRPRCLILAPTRELAAQVLESVEGYGKYVPLKATVMFGGVGLNPQVRALAAGVD 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH     +++S ++  VLDEAD MLD+GF  DI  IL   PK+R+ ++FS
Sbjct: 136 ILVATPGRLLDHCGQNTVDLSAVEIFVLDEADRMLDMGFIRDIRRILGLLPKQRQNMLFS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA     +   V +A  N     +D    LVA   + + + +++R H  + 
Sbjct: 196 ATFSDEIRTLADGLLNNPGYVEVARRNAASDLVDQTVHLVAQEHKRDLLTHLIRRHDWRQ 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + LAE      A+ G  SQ  R+ AL   +DG   V +ATD+AAR
Sbjct: 256 VLVFTRTKHGANRLAEKLAEDGIPAAAIHGNKSQSARTRALADFKDGTVPVLVATDIAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAGR G +V ++ +   +    + R     
Sbjct: 316 GLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGRAGSAVSLVAKEELKLLGSIERLIKRP 375

Query: 367 VVWEPA-----PSVEAIRERD 382
           +          PS   I  RD
Sbjct: 376 IQRGTVEGFNPPSRPRIERRD 396


>gi|320540198|ref|ZP_08039853.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
 gi|320029864|gb|EFW11888.1| putative ATP-dependent RNA helicase [Serratia symbiotica str.
           Tucson]
          Length = 428

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTHQ 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AKQDRQTNQPRALIMAPTRELAVQIHSDAEPLTQSTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLATDGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIEAYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|261250046|ref|ZP_05942623.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
 gi|260939550|gb|EEX95535.1| ATP-dependent RNA helicase RhlB [Vibrio orientalis CIP 102891]
          Length = 433

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 195/378 (51%), Gaps = 6/378 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +
Sbjct: 16  LHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTS 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 76  EHEGRKPNQPRAIIMAPTRELAIQIYNDAESLIASTGIKAALAYGGESYDKQLSKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGYLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPPIEEYI 375

Query: 364 NVSVV---WEPAPSVEAI 378
             ++    ++P+  +E +
Sbjct: 376 EHTIPVSDYDPSALIEDL 393


>gi|290989740|ref|XP_002677495.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284091103|gb|EFC44751.1| dead box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 618

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 10/376 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 246 FEEFGLKRELLMGIFEKGFERPSPIQEQTVPLALFGRDILARAKNGTGKTAAFIIPCLER 305

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    ++         L + PTRELA+Q     + +     V V V  GG S+  +   L
Sbjct: 306 VDTSKNQI------QILILVPTRELALQTSHVCKEIGKYLNVEVMVTTGGTSLKDDIVRL 359

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       N++++  +V+DEAD++L   F   IE ++   P  R+
Sbjct: 360 YKPVHILVGTPGRIIDLASKGVANLNNVSMLVMDEADKLLSPEFVPLIEKLISFVPPSRQ 419

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +      +      +N+  E             V    + + +  +   
Sbjct: 420 ILLFSATFPITVKDFRDKWLTKPYEINLMDELTLKGV-TQYYAFVEERQKVHCLNTLFSK 478

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 479 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMPQDLRNRVFHDFRNGACRNLVSS 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++  +    +    ++ +
Sbjct: 539 DLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINFVTYEDRFNLYKIEQ 598

Query: 362 EANVSVVWEPAPSVEA 377
           E    +   P P+++ 
Sbjct: 599 ELGTEIKPIP-PTIDK 613


>gi|300707737|ref|XP_002996065.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
 gi|239605329|gb|EEQ82394.1| hypothetical protein NCER_100895 [Nosema ceranae BRL01]
          Length = 528

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/370 (30%), Positives = 183/370 (49%), Gaps = 9/370 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FEN    +      + + + T +Q       L  KD++  AQTGSGKT++F L       
Sbjct: 134 FEN---EVLNNFKLKAFTSPTPIQAQGWPMALTGKDMVGIAQTGSGKTLSFVLPALIHAR 190

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A+         P+ L +APTREL +Q+    +       +      GGVS + ++RD+  
Sbjct: 191 AQIP-LRSGDGPIVLVLAPTRELCLQIKDVFDEYCRFFNMRCTAVYGGVSSYTQKRDISM 249

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VVG PGRL D      L+ + +  +VLDEAD MLD+GF   ++ I+ ++   R+ L
Sbjct: 250 GCEVVVGCPGRLIDLNEQGALHFNRVTFLVLDEADRMLDMGFEPQLKKIIVNTNPDRQTL 309

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M+SAT    +  LA+NY K+ V++ I S   + +  I     ++   ++ N +   L   
Sbjct: 310 MWSATWPKEVRRLAENYMKNFVQLTIGSVELKTNIKIKQIVSVIDSHEKANKLHESLNEK 369

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F +T+         L+   ++ VA+ G+ SQ  R   +   R G   + IATD
Sbjct: 370 KNEKVIIFANTKRMCDNLEDDLSRRGYKAVAIHGDKSQNIRDRIISDFRSGYKNILIATD 429

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQ---RRAER 358
           VAARG+D+ ++ LVI+ +  +N E+ +HR GRT R    +G+S            +   +
Sbjct: 430 VAARGLDIKNVALVINYDFPNNIEDYVHRIGRTARGDVTEGLSHSFFTSENSACAKELVK 489

Query: 359 LFREANVSVV 368
           + +EAN  V 
Sbjct: 490 ILKEANQDVP 499


>gi|169234830|ref|NP_001108495.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Rattus norvegicus]
 gi|165971701|gb|AAI58856.1| Ddx49 protein [Rattus norvegicus]
          Length = 480

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/452 (27%), Positives = 210/452 (46%), Gaps = 35/452 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRKPH 122

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRM 182
           +V+ TPGRL DH       N+  ++ +VLDEAD +L+ G  D   D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V++++  
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQATVRMVEQLDQRYLLVPEKVKDAYLVHLVQTF 242

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +    + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKMVD----V 406
           +  E    +         A+ E    +IL        +  + L++   DEKK ++    +
Sbjct: 363 IEEEIKQQLAEL------AVEEAQVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQM 416

Query: 407 LLAKHDPEKIA---AGFLRIHRAGLCAPEEIT 435
           +L   DP+  A   A   +I +      E++ 
Sbjct: 417 ILEGKDPDLEAKRKAELAKIKQQNRRFKEKVE 448


>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 417

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 206/386 (53%), Gaps = 9/386 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  ++   +  ++++ GY   TS+QE ++   +  KDVL SA TG+GKT AF L +A 
Sbjct: 1   MFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P   P  L + PTRELA+Q+G + E L   T +   V  GGV+       
Sbjct: 61  HLL-DYPRTKPGF-PRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADI 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   I+V TPGRL ++I  +  +   ++ +VLDEAD MLDLGF + I  I+  +  ++
Sbjct: 119 LTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRK 178

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           + ++FSAT  SP +   A+    + V +      ++ + I     L    + + N +VN 
Sbjct: 179 QTMLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNT 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G +  +VF + R +V   +  L       V L G++ Q +R+ A++  + G  +V 
Sbjct: 239 LKQEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ ++    +  +HR GRTGRAG+KG ++ ++  +      +
Sbjct: 299 VATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGK 358

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     +       ++ +R ++ +
Sbjct: 359 IERYTKERLSRR---FIQELRPKNKE 381


>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
          Length = 430

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 206/386 (53%), Gaps = 9/386 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  ++   +  ++++ GY   TS+QE ++   +  KDVL SA TG+GKT AF L +A 
Sbjct: 14  MFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQ 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R  P   P  L + PTRELA+Q+G + E L   T +   V  GGV+       
Sbjct: 74  HLL-DYPRTKPGF-PRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADI 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   I+V TPGRL ++I  +  +   ++ +VLDEAD MLDLGF + I  I+  +  ++
Sbjct: 132 LTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRK 191

Query: 181 RMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           + ++FSAT  SP +   A+    + V +      ++ + I     L    + + N +VN 
Sbjct: 192 QTMLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIHQWLHLADDANHKLNLLVNT 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G +  +VF + R +V   +  L       V L G++ Q +R+ A++  + G  +V 
Sbjct: 252 LKQEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ ++    +  +HR GRTGRAG+KG ++ ++  +      +
Sbjct: 312 VATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVIGK 371

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     +       ++ +R ++ +
Sbjct: 372 IERYTKERLSRR---FIQELRPKNKE 394


>gi|115438787|ref|NP_001043673.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|75321708|sp|Q5VNM3|RH2_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 2
 gi|55297015|dbj|BAD68586.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|55297606|dbj|BAD68952.1| putative nicotiana eukaryotic translation initiation factor 4A
           [Oryza sativa Japonica Group]
 gi|113533204|dbj|BAF05587.1| Os01g0639100 [Oryza sativa Japonica Group]
 gi|215707106|dbj|BAG93566.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618929|gb|EEE55061.1| hypothetical protein OsJ_02769 [Oryza sativa Japonica Group]
          Length = 404

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++
Sbjct: 30  ISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     + V  CIGG S+  + 
Sbjct: 90  CQIVD------TAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDEADEML  GF+D I  +    P 
Sbjct: 144 RKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ + SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 204 ELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 264 LYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + +   R   
Sbjct: 324 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILR 383

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 384 DIEQYYSTQIDEMPMNVADLI 404


>gi|157960228|ref|YP_001500262.1| ATP-dependent RNA helicase RhlB [Shewanella pealeana ATCC 700345]
 gi|189040044|sp|A8GZJ0|RHLB_SHEPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157845228|gb|ABV85727.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 436

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG     +R+ 
Sbjct: 71  LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P  +
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 181 R--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
               ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   ++++
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF +T+ S  +    L     +   L+G++ Q++R   L+    G   + 
Sbjct: 251 LEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGDIDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +      S+ 
Sbjct: 371 IESYIQHSIP 380


>gi|251788689|ref|YP_003003410.1| ATP-dependent RNA helicase SrmB [Dickeya zeae Ech1591]
 gi|247537310|gb|ACT05931.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 450

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 105/353 (29%), Positives = 173/353 (49%), Gaps = 4/353 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  
Sbjct: 22  MGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRI 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA+QV  +   + A T + +A   GGV+             +VV T GRL  
Sbjct: 80  LILTPTRELAMQVADQARAMAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQ 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAITT 195
           +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT         
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDF 199

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             +            S   +   + +      +  +   + ++L+      +IVF   R 
Sbjct: 200 AERLLNDPITIEAEPSRRERKKILQWYYRADDIQHKTALLSHLLKQPDVTRSIVFVRKRE 259

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+  
Sbjct: 260 RVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVSH 319

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           V + +L    +  LHR GRTGRAGRKG ++ ++  +     E++ R  N  + 
Sbjct: 320 VFNFDLPRTSDVYLHRIGRTGRAGRKGCAISLVEAHDYLLLEKVGRYLNEPLK 372


>gi|115437436|ref|NP_001043295.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|143455968|sp|Q5JKF2|RH40_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|57899403|dbj|BAD88050.1| putative ATP-dependent RNA helicase DB10 [Oryza sativa Japonica
           Group]
 gi|113532826|dbj|BAF05209.1| Os01g0549400 [Oryza sativa Japonica Group]
 gi|125570769|gb|EAZ12284.1| hypothetical protein OsJ_02174 [Oryza sativa Japonica Group]
          Length = 792

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 182/365 (49%), Gaps = 6/365 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I + +   G+ + T +Q       L+ +DV+  A+TGSGKT+ + L  
Sbjct: 149 ITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPG 208

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  + +P S P  L +APTRELA Q+  E       + +      GG     + 
Sbjct: 209 FMHI--KRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQL 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 267 RDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPP 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A++     V+V I S +    +S I     L+  S++   + 
Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR   + + ++   T   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSP 446

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++         + A
Sbjct: 447 ILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYA 506

Query: 357 ERLFR 361
             L +
Sbjct: 507 ADLIK 511


>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 407

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 174/357 (48%), Gaps = 3/357 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E GY   T +Q   +   L  +DVL SA TG+GKT AF L     L  +  R  P  
Sbjct: 17  AIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLPALQFL-QDFPRKQPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A   L + PTRELA+QV  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  A-RILILTPTRELAMQVAEQARALAKHTRLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT-ISPA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT     
Sbjct: 135 RLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSSECRWRKQTLLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +     +  K+   ++     R+   I               ++  +  + A+ +IVF  
Sbjct: 195 VEGFTADLLKEPAMIDAEPSRRERKKIAQWYHRADDMAHKLELLKSILNNQAERSIVFLK 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  +S     L +       + GE+ Q  R+NA+    DG   V +ATDVAARGIDLP+
Sbjct: 255 TRERLSALRSELEKAEIPCAWIQGEMPQDRRNNAISRFSDGTVNVLLATDVAARGIDLPN 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  VI+ ++  + +  LHR GRT RAG+KG ++ ++  + Q   ER+ R  +  +  
Sbjct: 315 VTHVINYDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQPMIERVARYVSEEIKE 371


>gi|158298027|ref|XP_318117.4| AGAP004711-PA [Anopheles gambiae str. PEST]
 gi|157014611|gb|EAA13218.5| AGAP004711-PA [Anopheles gambiae str. PEST]
          Length = 613

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 185/381 (48%), Gaps = 17/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P+ +  AL++R     + +Q   +   L  +D++  A TGSGKT+ F L +  
Sbjct: 179 MK----LPKAVLAALAKRNIKKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIIM 234

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGV 112
             L +  R  F     P  L I P+RELA Q    +++            +   + IGGV
Sbjct: 235 FCLEQELRLPFIKREGPYGLIICPSRELAKQTHDIIQYYCRHLQEAGMPEIRTVLAIGGV 294

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V+     +Q GAHI+V TPGRL D +  K + +   + + +DEAD M+D+GF +D+  I
Sbjct: 295 PVNDAIAIIQQGAHIMVATPGRLMDMLDKKLVTLDVCRYLCMDEADRMIDMGFEEDVRTI 354

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   AK+     V +N+        ++      V    + 
Sbjct: 355 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKV 414

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+       ++F   +  V    + L     + VA+ G   Q+ER  +++  R+
Sbjct: 415 VYLLECLQKTPPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVESFRN 473

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G KG++   I +  
Sbjct: 474 QEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKAT 533

Query: 353 QR----RAERLFREANVSVVW 369
           ++      + L  EA   V  
Sbjct: 534 EQFVLLDLKHLLIEAQQKVPP 554


>gi|271501630|ref|YP_003334656.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345185|gb|ACZ77950.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 450

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/353 (30%), Positives = 174/353 (49%), Gaps = 4/353 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T++Q   + P +  +DVL SA TG+GKT A+ L +   LL    + S    P  
Sbjct: 22  MGFSRPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--GPPRI 79

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA+QV  +   L A T + +A   GGV+             +VV T GRL  
Sbjct: 80  LILTPTRELAMQVADQARALAAHTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQ 139

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAITT 195
           +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT         
Sbjct: 140 YIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIQDF 199

Query: 196 LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
             +     A      S   +   + +      +  +   + ++L+      +IVF   R 
Sbjct: 200 AERLLNDPAEVEADPSRRERKKILQWYYRADDIQHKTALLSHLLKQPDVTRSIVFVRKRE 259

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            V      L     +   L GE+ Q +R+ A++ + +GR +V +ATDVAARG+D+ D+  
Sbjct: 260 RVHELVDWLRSAGIESCYLEGEMVQAKRNEAIKRLSEGRVKVLVATDVAARGLDIQDVSH 319

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           V + +L    +  LHR GRTGRAGRKG ++ ++  +     +++ R  N  + 
Sbjct: 320 VFNFDLPRTSDIYLHRIGRTGRAGRKGSAISLVEAHDYLLLDKIGRYLNEPLK 372


>gi|169773691|ref|XP_001821314.1| ATP-dependent RNA helicase ded1 [Aspergillus oryzae RIB40]
 gi|91206555|sp|Q2UGK3|DED1_ASPOR RecName: Full=ATP-dependent RNA helicase ded1
 gi|83769175|dbj|BAE59312.1| unnamed protein product [Aspergillus oryzae]
          Length = 675

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 188 FTNPPLDDHLIANITLAHYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                   +PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 248 AFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 427

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 428 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRER 487

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 488 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 547

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 548 ATAFFNRGNRGVVRDLIDLLKEAHQEVP 575


>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
          Length = 707

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 185/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    +  ++   +   GY   T +Q   +   +  +D++  AQTGSGKT AF L +
Sbjct: 270 IDTFGASGLRDLLISNIERAGYKTPTPIQRVCIPTIMAGRDIMGCAQTGSGKTAAFLLPI 329

Query: 59  ASTLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +LA     S + +    P A+ +APTRELA+Q+  E       + V   VC GG S+
Sbjct: 330 LHGILASGGGNSGSMSSTAEPSAVVVAPTRELAIQIHNEARKFALDSIVRTVVCYGGASM 389

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + + R LQNG  ++V TPGRL D +    ++ S ++ +VLDEAD MLD+GF  DIE I++
Sbjct: 390 NSQYRQLQNGCAVLVATPGRLNDFVTRGRVSFSSVRYLVLDEADRMLDMGFIGDIEKIVN 449

Query: 175 SSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                         FSAT    I TLA N+ ++ V   + +    ++D+    + V    
Sbjct: 450 HQTMPAVGQRQTLLFSATFPEEIQTLACNHLQNYVFYAVGTVGAANTDVCQEVLNVPRQQ 509

Query: 231 RD---NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +     + +     +G    ++F  T+ +      +L+       ++ G+  Q +R  AL
Sbjct: 510 KREVLMSKIEEFMANGDNKVLIFVETKRTADFLATLLSSQQLNSTSIHGDRFQSQREEAL 569

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + G   + +AT VAARG+D+  +  VI+ +L    +  +HR GRTGR G KG +V  
Sbjct: 570 AQFKAGIRSILVATAVAARGLDIRGVSHVINYDLPKEVDEYVHRIGRTGRVGNKGHAVSF 629

Query: 348 IPQNMQ----RRAERLFREANVSVVW 369
             +       +   ++  +A+  V  
Sbjct: 630 YDEEQDGALAKNLVKILTDASQEVPE 655


>gi|332289421|ref|YP_004420273.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
 gi|330432317|gb|AEC17376.1| ATP-dependent RNA helicase RhlB [Gallibacterium anatis UMN179]
          Length = 399

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 187/365 (51%), Gaps = 5/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL + G    T +Q   L   L  KD+   AQTG+GKTVAF  AL   L+ E
Sbjct: 15  NLHPNILSALQKMGMTYCTPIQADSLPYSLAGKDIAGQAQTGTGKTVAFLTALFQKLIQE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+ +APTRELAVQ+  + +     TG+ + +  GG    ++ + LQ G 
Sbjct: 75  PASH---HTLAAIILAPTRELAVQIYHDAQHFAQTTGLKLGLAYGGDGYDKQLQALQQGV 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
           +I++GT GR+ D+++ + +++ H++ VVLDEAD M DLGF  DI +IL   P       +
Sbjct: 132 NILIGTTGRVIDYMKQRIISLDHVQVVVLDEADRMFDLGFIRDIRYILRHCPPPSERLTM 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I S  +    +       +  D+   ++ +L    
Sbjct: 192 LFSATLSFKVRELAFEDMNDPHYIEIESAYKTADTVKEELFYPSNQDKMRLLLTLLEEEW 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +T+    +  + L     +   L+G++ Q++R   L+   +G+  + +ATDV
Sbjct: 252 PERCIIFANTKHQCEKIWQYLLADQLRAGLLTGDVPQKKRFALLEQFANGQLDILVATDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G+S+    ++       + +  
Sbjct: 312 AARGLHIPQVTHVFNYDLPDDYEDYVHRIGRTGRAGENGISISFACEDYAVNLPAIEQYI 371

Query: 364 NVSVV 368
             S+ 
Sbjct: 372 GHSIP 376


>gi|242237660|ref|YP_002985841.1| ATP-dependent RNA helicase RhlB [Dickeya dadantii Ech703]
 gi|242129717|gb|ACS84019.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 428

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALESKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHHLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG  + +  GG    ++ + L+NG 
Sbjct: 76  ALADRQVNQPRALIMAPTRELAVQIHTDAEALARVTGFKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIVFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTHGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGYSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             ++ 
Sbjct: 376 GHNIP 380


>gi|38564733|gb|AAR23806.1| initiation factor eIF4A-15 [Helianthus annuus]
          Length = 413

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 188/373 (50%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGILQQLDYN- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L  G H
Sbjct: 106 -----VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRSDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + ++    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDEKMLGDIQKFYNV 400

Query: 366 SVVWEPAPSVEAI 378
            V   P+   + I
Sbjct: 401 VVEELPSNVADLI 413


>gi|67522985|ref|XP_659553.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|74657502|sp|Q5BBY1|HAS1_EMENI RecName: Full=ATP-dependent RNA helicase has1
 gi|40745958|gb|EAA65114.1| hypothetical protein AN1949.2 [Aspergillus nidulans FGSC A4]
 gi|259487308|tpe|CBF85879.1| TPA: ATP-dependent RNA helicase has1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BBY1] [Aspergillus
           nidulans FGSC A4]
          Length = 609

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 212/467 (45%), Gaps = 14/467 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + + E G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +     L    
Sbjct: 135 LSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEML--SA 192

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + ++PTRELA+Q+      L         + IGG +   E   L  G +
Sbjct: 193 LRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVN 252

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH++        +LK +V+DEAD +L++GF D++  I+   P + R  M 
Sbjct: 253 LLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTML 312

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 313 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 372

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +  V I T
Sbjct: 373 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICT 432

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +  + +HR GRT R A  +G S+  +  +     + L 
Sbjct: 433 DVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGRGRSLMFLQPSEVGFLKYL- 491

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    D  +      A H    +   
Sbjct: 492 KEARVPVVEFDFPAKKIVNVQSQLEKLISQNYYLNKSAKDGYRSYLQAYASHSLRSVFDV 551

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +++ ++   +      + L S   R +   +  +   GS+  
Sbjct: 552 HKLDLVKVAKSFGFSTPPRIDIQLGSSLSRDKKQQQQGRRSYGSQPK 598


>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
 gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 524

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 196/396 (49%), Gaps = 22/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 47  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 106

Query: 63  -------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVC 108
                             R  P + P  L + PTRELA+QV                   
Sbjct: 107 KTQAQQPREPQSGDRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSI 166

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DD
Sbjct: 167 LGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDD 226

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P  R+ ++FSAT+   I +L     K+  R+ I  +    ++I         
Sbjct: 227 IETIVAATPATRQTMLFSATLDGKIGSLTSRLLKEPERIEIVQKLEARTNIAQTVHYVDD 286

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 287 RDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTI 346

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V +
Sbjct: 347 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVSL 406

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           +    Q   +R+ R     +   P   +E    R A
Sbjct: 407 VHHAEQGALKRIERFVRTPL---PVNVIEGFEPRKA 439


>gi|224089849|ref|XP_002308835.1| predicted protein [Populus trichocarpa]
 gi|222854811|gb|EEE92358.1| predicted protein [Populus trichocarpa]
          Length = 556

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I  +L+++G   L  +Q+A+L P ++ KD+   A+TG+GKT+AFG+ +   ++  N
Sbjct: 74  ISKEIVNSLAKKGITKLFPIQKAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKIIEFN 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLA+ +APTRELA QV +E          +     GGV +  + R+L+ G  
Sbjct: 134 KQHGKGRNPLAMVMAPTRELARQVQKEFHDSAPSLDTIC--LYGGVPISSQMRELEYGVD 191

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++   LN+S +K VVLDEAD+ML +GF DDIE IL   PKKR  + FS
Sbjct: 192 VVVGTPGRIIDLMKRGSLNLSEIKYVVLDEADQMLGVGFVDDIETILSRLPKKRHSMCFS 251

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---ILRYHG 243
           AT+   I  L + Y KD + +++  ++ +          +A      A +    I  +  
Sbjct: 252 ATMPSWIKQLVRKYLKDPLTIDLVGDSDRKLADGITLYSIASDMYAKASILGPLITEHAK 311

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +           +  AL G++SQ  R   L   R+G   + +ATDV
Sbjct: 312 GGKCIVFTETKR-DADRLAYAMAKNHKCEALHGDISQNVRERTLSGFREGHFNILVATDV 370

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH  L    E  +HRSGRTGRAG+KG ++ +  Q+  R+ + + R+ 
Sbjct: 371 AARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDDARQVKLIERDT 430

Query: 364 NVSVVWEPAPSVE 376
                  P  +V+
Sbjct: 431 GCRFSELPKIAVD 443


>gi|224065635|ref|XP_002301895.1| predicted protein [Populus trichocarpa]
 gi|222843621|gb|EEE81168.1| predicted protein [Populus trichocarpa]
          Length = 1112

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 200/437 (45%), Gaps = 11/437 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E + +  Y    ++Q   L   +  +D +  A+TGSGKT+AF L +   +  +     
Sbjct: 483 ILETIKKLNYEKPMTIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHI-KDQPPVE 541

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  +++       +      GG  V ++  +L+ G  IVV 
Sbjct: 542 AGEGPIGLVMAPTRELVQQIHSDIKKFAKALSIRCVPVYGGSGVAQQISELKRGTEIVVC 601

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +    R+ ++FSA
Sbjct: 602 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 661

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     L     R   ++ +L     K  
Sbjct: 662 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVELRTEDQRWLRLLELLGEWYQKGK 721

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I +F  ++       + L +  +  ++L G   Q +R + +   +     + IAT VAAR
Sbjct: 722 ILIFVQSQDKCDSLFRNLLKFGYPCLSLHGAKDQTDRESTISDFKTNVCNLMIATSVAAR 781

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DLELVI+ +  ++ E+ +HR GRTGRAGRKG ++  I ++  R A  L +   +S
Sbjct: 782 GLDVKDLELVINYDAPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELS 841

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
               P   ++A+ +    ++ Q    L+   G           + + EK  A   +  +A
Sbjct: 842 EQVVPQ-DLKALADGFMAKVNQG---LEQAHGTGYGGSGFKFNEEEDEKRMAA--KKAQA 895

Query: 427 GLCAPEEITPVSLVSGR 443
                E+    S     
Sbjct: 896 KEYGYEDEKSDSEDEDE 912


>gi|167042639|gb|ABZ07361.1| putative DEAD/DEAH box helicase [uncultured marine crenarchaeote
           HF4000_ANIW133K13]
          Length = 430

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/425 (30%), Positives = 220/425 (51%), Gaps = 22/425 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE   + + I + L + G+     +QE  +   L   DV+  A TG+GKT AF L +
Sbjct: 1   MTNFEKLGLEKKILDVLRDAGFTKPFPIQERAIPVLLDGNDVIGQAHTGTGKTAAFALPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++              + +APTRELA+Q+  E++     TG+  A   GG S+  + 
Sbjct: 61  IQLVVKNQ-------GIQGIIMAPTRELALQITSEIKRFAKNTGITTATIYGGQSMGIQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    I+V TPGRL DH++   + ++++K VVLDEAD MLD+GF +DIEFILD +P+
Sbjct: 114 DALRKKPEIIVATPGRLIDHLKRGTIKLNNVKHVVLDEADIMLDMGFIEDIEFILDLTPE 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R   ++SAT+ P I  LA+   K   R+ + S+    + ID   +++   ++   +++ 
Sbjct: 174 ERTTSLWSATMPPEIIRLAETNMKSPKRILVDSDELSCAGIDQSFLIIKDREKSKYLLDF 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  IVFCST+       K+L +    VV++ G++SQ  R +++   R   A + 
Sbjct: 234 IHGNIGQC-IVFCSTKIRTRDVAKLLYKSGESVVSVEGDMSQHRRESSMSKFRKSNANIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P + LVI+ ++ +      HR GRT RAG KG ++ ++  +       
Sbjct: 293 VATDVAARGIDIPTVALVINYDIPNRDMVYFHRIGRTARAGAKGRAITMVSYSSVGEWNE 352

Query: 359 LFREANVSV--------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + ++  V++        +    P  + ++ R A R     +   S Q   ++M      K
Sbjct: 353 IKKQTKVNMTDLNEKLGIEVKIP--DPLKRRVATRQFSHRIKNHSSQFSRRQM--SARNK 408

Query: 411 HDPEK 415
           +D  K
Sbjct: 409 YDKRK 413


>gi|145230033|ref|XP_001389325.1| ATP-dependent RNA helicase has1 [Aspergillus niger CBS 513.88]
 gi|143019625|sp|A2Q9T6|HAS1_ASPNC RecName: Full=ATP-dependent RNA helicase has1
 gi|134055440|emb|CAK43955.1| unnamed protein product [Aspergillus niger]
          Length = 606

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 114/468 (24%), Positives = 211/468 (45%), Gaps = 14/468 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   + + + G+  +T +Q+  + P L  +DVL +A+TGSGKT++F +     L   
Sbjct: 131 NLSEKTMKGIQDMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML--S 188

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    L ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 189 ALRFKPRNGTGVLVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGV 248

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LK +V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 249 NLLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTM 308

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 309 LFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLK 368

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 369 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLIC 428

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +  + +HR GRT R    KG S+  +  +     + L
Sbjct: 429 TDVAARGLDIPAVDWIIQFDPPDDTRDYVHRVGRTARGVNGKGRSLMFLQPSEVGFLKHL 488

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +  
Sbjct: 489 -KEARVPVVEFDFPANKIVNVQSQLEKLIGQNYYLNKSAKEGYRAYLQAYASHSLRSVFD 547

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                 ++I +    +      + L S   R +   +  +   GS+  
Sbjct: 548 VHKLDLVKIAKGFGFSTPPRIDIQLGSSLSRDKKQQQQGRRNYGSQPK 595


>gi|114776507|ref|ZP_01451552.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553337|gb|EAU55735.1| Superfamily II DNA and RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 414

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 198/380 (52%), Gaps = 3/380 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E ++   Y   T VQ   +   L+ +DV+ +AQTG+GKT  F L +   LLA+ 
Sbjct: 8   LSAPILETIT-VTYTKPTPVQLESIPAILKGRDVMAAAQTGTGKTAGFTLPML-HLLAQG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A+   AL + PTRELA QVG  +     +  +  AV  GGV ++ +   L+ G  
Sbjct: 66  PRV-RANQVRALILVPTRELAGQVGDSVVRYGVRLPLRSAVVFGGVKINPQMMKLRKGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   +  + L+ +VLDEAD MLD+GF D+++ IL   P KR+ LMFS
Sbjct: 125 ILVATPGRLLDLHQQNAVRFNQLEILVLDEADRMLDMGFMDELKKILALLPVKRQNLMFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LAK      V + +   N   + I++    V    ++  +  +++ +  + 
Sbjct: 185 ATYSDEIRALAKTIVHHPVEICVNPANSTATTIEHCLYPVDKQQKNALLKKLIKDNDWQQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC T+ +  R  + L +      A+ G+ SQ  R+ AL   ++ + +V +ATD+AAR
Sbjct: 245 VLVFCKTKQAADRLVRFLEQQAISAAAIHGDKSQGARTRALSEFKNSQVQVLVATDLAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  V++ +L    ++ +HR GRTGRAG  G +V ++  +       + R     
Sbjct: 305 GLDIPQLPQVVNYDLPHVAQDYIHRIGRTGRAGVSGQAVSLVCADEFDELAAVERVIQQL 364

Query: 367 VVWEPAPSVEAIRERDAQRI 386
           +  +    +E +      R+
Sbjct: 365 ITRKTMEGLEPVHALPESRL 384


>gi|225452412|ref|XP_002273908.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1226

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 178/377 (47%), Gaps = 9/377 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              FE+   P  I   +   G+   T +Q       L+ +D++  A+TGSGKT+ + +  
Sbjct: 161 FTSFESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPG 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R +P   P  L ++PTRELA Q+  E       + +      GG     + 
Sbjct: 221 FIHL--KRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQL 278

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 279 RDLDRGADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 338

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    E   +  I     ++   ++   + 
Sbjct: 339 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLE 398

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR     + I+   +   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 399 QILRSQEPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSP 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++     +   + A
Sbjct: 459 VLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYA 518

Query: 357 ERLFRE---ANVSVVWE 370
             L +    AN  V  E
Sbjct: 519 SDLVKVLEGANQRVPPE 535


>gi|187779372|ref|ZP_02995845.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
 gi|187772997|gb|EDU36799.1| hypothetical protein CLOSPO_02968 [Clostridium sporogenes ATCC
           15579]
          Length = 374

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 187/371 (50%), Gaps = 8/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L  +  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +       +A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPD------INAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++++  I+D++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIDNTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   V I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLVIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    +   + 
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEATLDT 354

Query: 359 LFREANVSVVW 369
           + +E  + +  
Sbjct: 355 IEKEIKLKIPR 365


>gi|297595326|gb|ADI48178.1| vasa [Crepidula fornicata]
          Length = 502

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 197/381 (51%), Gaps = 13/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +     + +   GY   T +Q+  +   L  +D++  AQTGSGKT AF L +
Sbjct: 56  IQAFEDAGLLPTFLKNVQRAGYTKPTPIQKHAIPSILAGRDLMGCAQTGSGKTAAFILPV 115

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++ E    SP S    P  + +APTRELA Q+  E      +T V   V  GGVSV 
Sbjct: 116 LTAMVKEGLTCSPMSEFQEPQTIVVAPTRELASQIYTEARKFALRTDVRPVVVYGGVSVA 175

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R +++GA++VVGTPGRL D I    +++  +K ++LDEAD MLD+GF   I  +++S
Sbjct: 176 HQLRQVESGANLVVGTPGRLLDFIERGKISVKKVKFLILDEADRMLDMGFEPSIRKLVES 235

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    I  LA ++  D + + +       SD++   + V    +
Sbjct: 236 LGMPSKSERQTLMFSATFKAEIQQLAADFMNDYLFITVGIVGGACSDVEQTFLEVDRLQK 295

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + +IL   G    +VF   + +       L++  +   ++ G+  Q+ER  AL   +
Sbjct: 296 REYLCDILNSSGTNRVLVFVGQKRNADFLASFLSQSGYPTTSIHGDRLQREREEALMDFK 355

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G++ V IAT+VAARG+D+PD+  V++ +L ++ +  +HR GRTGR G  G +     Q+
Sbjct: 356 RGKSPVLIATNVAARGLDIPDVTHVVNYDLPTDIDEYVHRIGRTGRCGNLGKATSFYSQD 415

Query: 352 MQRRAE----RLFREANVSVV 368
                     ++  EA   V 
Sbjct: 416 TDFALASSLVKILSEARQEVP 436


>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 416

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 183/355 (51%), Gaps = 3/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   GY   T +Q+A +   L   DV+  AQTG+GKT AF L L    L   
Sbjct: 8   LHSDLLAVIDTLGYQTATPIQKAAIPEVLAGHDVMAGAQTGTGKTAAFALPLIQRHLV-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +   A   L + PTRELA QV +         G+   V  GG S++ +   L  G  
Sbjct: 66  -RDTSEKAIRVLVLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALNKGCD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL +    + +++S ++ +VLDEAD MLD+GF  DIE IL   P+ R+ L FS
Sbjct: 125 VLVATPGRLLELAFKELIDLSTVETLVLDEADRMLDMGFIVDIERILKRLPETRQTLFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  + +L+K   K    + +A  N   + I+ R   V    +   +  ++     + 
Sbjct: 185 ATFNDDVFSLSKTILKQPKLIEVAERNAMAAKIEQRFYEVDNQRKAGLVAYLIGSKNWQQ 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +V    K L +      A+ G+ SQ  R   L+  + G+ R  +ATDVAAR
Sbjct: 245 VLIFTRTKQAVDELAKELEKDGISAAAVHGDKSQGARDRGLEEFKTGQVRALVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           G+D+  L+ VI+ EL  N E+ +HR GRTGRAG+ G++V ++    +   E + +
Sbjct: 305 GLDIQQLQYVINYELPYNAEDYIHRIGRTGRAGQAGLAVSLVSNKEKYLLEDVEK 359


>gi|237833961|ref|XP_002366278.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211963942|gb|EEA99137.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221486500|gb|EEE24761.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221508269|gb|EEE33856.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 734

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/409 (29%), Positives = 190/409 (46%), Gaps = 40/409 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  ++ + +S   Y   T +Q+  +   L  +D++  AQTGSGKT AF   + + +L + 
Sbjct: 237 IHPLLLQNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDG 296

Query: 67  DRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
               P +A             P+ L ++PTRELA+Q+  E       TGV      GG  
Sbjct: 297 PPPLPQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGGSD 356

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           V R+  DL  G  I V TPGRL D +  + + +  ++  VLDEAD MLD+GF   I+ I+
Sbjct: 357 VKRQLIDLDGGCDICVATPGRLVDLLERRKVRLGLVQFFVLDEADRMLDMGFLPQIKLIV 416

Query: 174 DSSPKKRRML------------------------MFSATISPAITTLAKNYQKDAVRVNI 209
           +S                                MFSAT    I  LAK++ +D + + +
Sbjct: 417 ESFDLPPSPTPQTAGYPSLGGDSGAGRRVGRQTVMFSATFPREIQMLAKDFLEDYIYLAV 476

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                 +  I  R        +   +V +LR       I+F  T+         L +  F
Sbjct: 477 GRVGSTNEFIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIEDYLVDDDF 536

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V++ G+ +QQER  AL++ +  +  + +ATDVAARG+D+ ++  VI+ +L +N ++ +
Sbjct: 537 PAVSIHGDRTQQEREEALRLFKAAKCPILVATDVAARGLDISNVTHVINFDLPTNIDDYV 596

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSV 375
           HR GRTGRAG  G++   + ++ +   R    L  EA   +     P V
Sbjct: 597 HRIGRTGRAGNLGLATSFVNESNKPILRDLLNLLEEAKQDIPSFLPPLV 645


>gi|300772029|ref|ZP_07081899.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760332|gb|EFK57158.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/418 (27%), Positives = 191/418 (45%), Gaps = 23/418 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+    + I  A+SE GY   T +Q+  + P L  +D++  AQTG+GKT AF L + 
Sbjct: 3   NSFEDFKFNKQILNAISEAGYSVPTEIQQKAITPVLAGQDIMGIAQTGTGKTAAFVLPML 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++      AL ++PTRELA+Q+   ++       +   V  GG+    +  
Sbjct: 63  MKL-----KYAQGKDMRALILSPTRELAMQIEEHIQLFSKYLDLRTVVLYGGLGPKTQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G  I+V TPGR  D      +N+  LK +V+DEAD+M+D+GF   I  IL+  P+K
Sbjct: 118 NLEKGVDIIVATPGRFLDLYLEGHINVKSLKFLVMDEADKMMDMGFISKIHRILEVVPRK 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  +A ++      + +  +      +      V        ++  L
Sbjct: 178 RQNLLFSATMSELVRKIAGDFLAFPTVIEVTEQATPAKTVQQAVYKVPNQKTKLNLLQHL 237

Query: 240 RYHGAKNA--IVFCSTR--ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                     IVFC T+  A              QV  +     Q  R N++   ++G  
Sbjct: 238 LKDDESFHRLIVFCKTKTVADNVFHFLERKYGTEQVRVIHANKGQNTRINSINAFKEGNI 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDVAARG+D+ ++  VI+ E+    E+ +HR GRTGRA  +G ++          
Sbjct: 298 RILVATDVAARGLDVSNVSHVINFEVPIVIEDYVHRIGRTGRAFNEGDAITFSNPAEDYY 357

Query: 356 AERLFREANVSVVWEPAPSVEAI------------RERDAQRILQDPLFLDSIQGDEK 401
             ++ +    S+     P    +            RE D Q+   DP F  +    + 
Sbjct: 358 VRKIEKLIRQSIPVLEIPEEVFVEKTGFEERQAIAREIDNQKKKDDPDFKGAFHEKKY 415


>gi|297738935|emb|CBI28180.3| unnamed protein product [Vitis vinifera]
          Length = 916

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 188/379 (49%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + +    YV  T +Q   +   +  +D++  AQTGSGKT AF   +   +L  
Sbjct: 427 HLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICGILRN 486

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +  + P AL ++PTREL+ Q+  E +    KTG+ V V  GG  + ++ R+L+ 
Sbjct: 487 QLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLER 546

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-- 181
           G  I+V TPGRL D I    +++  +K + LDEAD MLD+GF   I  I++         
Sbjct: 547 GVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGA 606

Query: 182 --MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              ++FSAT    I  LA ++  + + +++         I  R   V  +D+   ++++L
Sbjct: 607 RQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLL 666

Query: 240 RYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +              +VF  T+  V    + L  +     A+ G+  Q ER  AL+  + 
Sbjct: 667 QSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFKS 726

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G   + +ATDVAARG+D+P +  VI+ +L    ++ +HR GRTGRAG+ G++        
Sbjct: 727 GATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATAFFNDGN 786

Query: 351 -NMQRRAERLFREANVSVV 368
            ++ +    L +E+N  V 
Sbjct: 787 LSLAKSLVELMQESNQEVP 805


>gi|225445460|ref|XP_002285108.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 615

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 188/379 (49%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + +    YV  T +Q   +   +  +D++  AQTGSGKT AF   +   +L  
Sbjct: 139 HLGEGLNQNIRRCKYVKPTPIQRHAIPIAMAGRDLMACAQTGSGKTAAFCFPIICGILRN 198

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +  + P AL ++PTREL+ Q+  E +    KTG+ V V  GG  + ++ R+L+ 
Sbjct: 199 QLSRGGARLACPTALILSPTRELSCQIHEEAKKFSYKTGLKVVVAYGGAPISQQFRNLER 258

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-- 181
           G  I+V TPGRL D I    +++  +K + LDEAD MLD+GF   I  I++         
Sbjct: 259 GVDILVATPGRLVDMIERARVSLRMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGA 318

Query: 182 --MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              ++FSAT    I  LA ++  + + +++         I  R   V  +D+   ++++L
Sbjct: 319 RQTMLFSATFPNEIQRLAADFLSNYIFLSVGRVGSSTDLIVQRVEFVEDTDKRYHLMDLL 378

Query: 240 RYHGAKNA-------IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +              +VF  T+  V    + L  +     A+ G+  Q ER  AL+  + 
Sbjct: 379 QSQMTNRTPKKYALTLVFVETKRGVDALEQWLCMNGLAATAIHGDKVQMERERALKSFKS 438

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G   + +ATDVAARG+D+P +  VI+ +L    ++ +HR GRTGRAG+ G++        
Sbjct: 439 GATPIMVATDVAARGLDIPHVAHVINFDLPKAIDDYVHRIGRTGRAGKSGLATAFFNDGN 498

Query: 351 -NMQRRAERLFREANVSVV 368
            ++ +    L +E+N  V 
Sbjct: 499 LSLAKSLVELMQESNQEVP 517


>gi|289209627|ref|YP_003461693.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
 gi|288945258|gb|ADC72957.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 440

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/368 (30%), Positives = 188/368 (51%), Gaps = 3/368 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   +   G+   T +Q   L   L  +DV   AQTG+GKT AF +A  + LL +
Sbjct: 15  DLPEAVQAGIRATGFETCTPIQALTLPIALAGRDVAGQAQTGTGKTAAFLIATFNRLLRQ 74

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                  A+   AL +APTRELA+Q+ ++ E L  +TG+ +A+  GG     +R  L+ G
Sbjct: 75  APAPDRRATDVRALIVAPTRELAIQIHKDAEMLGRETGLKLALAYGGTGYDSQREQLEAG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM-- 182
           A I++GTPGR+ D+ + K   + H + VVLDEAD M DLGF  D+ F++           
Sbjct: 135 ADILIGTPGRIIDYFKQKVFGLGHTEVVVLDEADRMFDLGFIKDVRFLMRRCAPASERLS 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +  +V + +E      +       A  ++   ++ + R  
Sbjct: 195 MLFSATLSLRVMELAYEHMSNPEKVQVEAETLTADRVRQVIYYPANEEKIPLLLGLARDL 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+    +    L  +  +   LSG++ Q +RS+ L+    G     +ATD
Sbjct: 255 KPERAIVFVNTKHGAEKVCDWLNVNGQKAALLSGDVPQNKRSSLLERFTAGEYAFLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRT RAG +G ++    ++       +   
Sbjct: 315 VAARGLHIPAVTHVFNFDLPQSGEDYVHRIGRTARAGAEGDAISFGCEDSAFYLPDIESY 374

Query: 363 ANVSVVWE 370
               +  E
Sbjct: 375 LGERIPTE 382


>gi|194216191|ref|XP_001497891.2| PREDICTED: similar to mCG15236 [Equus caballus]
          Length = 563

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 190/372 (51%), Gaps = 9/372 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 164 FQCYPE-VMENIQKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 222

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL  
Sbjct: 223 SQP--IEKRNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCIYGGGDRNGQIQDLTK 279

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 280 GVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 339

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   ++  LA++Y K+ + V + + +    S +    ++    ++ + I   L   
Sbjct: 340 MTSATWPYSVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQTFLESM 399

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 400 SPKDKVIVFVSRKAVADHLSSDLILQHISVESLHGNREQSDRERALENFKTGKVRILIAT 459

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ ++ +N  R A     
Sbjct: 460 DLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLLTRNDWRVANELIN 519

Query: 359 LFREANVSVVWE 370
           +   AN S+  +
Sbjct: 520 ILERANQSIPED 531


>gi|29612573|gb|AAH49396.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 482

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 205/462 (44%), Gaps = 24/462 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++     + +  S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +
Sbjct: 4   MEGFSSLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + IGG+ +  + 
Sbjct: 64  LQKLSEDP------FGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQA 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    HIV+ TPGRL DHIR            L     D   E     F  D++ IL+
Sbjct: 118 LELSRKPHIVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILE 177

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P +R+ L+FSAT++  +  L              SE R    +D R +LV    +D  
Sbjct: 178 AVPAQRQTLLFSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAY 237

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V         H   + ++F +T  +      +L E  F  VAL   + Q++R  AL   
Sbjct: 238 LVYLIQKFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKF 297

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q
Sbjct: 298 KSSVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQ 357

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKK 402
                   +  + N+ +        E ++         R+ +  L+   F +  + +++K
Sbjct: 358 YDIHLVHAIEGQINMKLEEFKVKENEVLKILTQVNVARRECEIKLECTDFDEKKEINKRK 417

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + +     D E      L   +      +E    ++ + RD
Sbjct: 418 QLILEGKDPDLEAKRKAELEKIKKQKKKFKEHIQETIQNKRD 459


>gi|269962284|ref|ZP_06176636.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269832987|gb|EEZ87094.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 437

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 198/387 (51%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  
Sbjct: 15  DLKPQVIEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G
Sbjct: 75  PEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--M 182
             I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    
Sbjct: 135 VDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++           
Sbjct: 315 VAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY---------A 365

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD 389
            N+  + E       + + DA  ++QD
Sbjct: 366 INLPPIEEYIEHAIPVSDYDASALIQD 392


>gi|189193873|ref|XP_001933275.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978839|gb|EDU45465.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 686

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 192/385 (49%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +   GY   T VQ+  +   +  +D++  AQTGSGKT  F   + + 
Sbjct: 197 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 256

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    P  A           P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 257 AFQNGPSPPPQQAQGGYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYG 316

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I 
Sbjct: 317 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 376

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I           R+ LMFSAT    I  LA+++ KD + +++        +I  +   V
Sbjct: 377 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYV 436

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D+ + +++IL  HGA  +++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 437 EDVDKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKA 496

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++  
Sbjct: 497 LEMFRTGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATA 556

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  V 
Sbjct: 557 FFNRGNRGVVRDLLELLKEANQEVP 581


>gi|312074866|ref|XP_003140162.1| ATP-dependent RNA helicase An3 [Loa loa]
 gi|307764673|gb|EFO23907.1| ATP-dependent RNA helicase An3 [Loa loa]
          Length = 603

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/390 (26%), Positives = 183/390 (46%), Gaps = 22/390 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +    +I E + + GY   T VQ+  +   L  +D++  AQTGSGKT AF + + 
Sbjct: 53  TVFDELQLHPLIQENIKKSGYTKPTPVQKYSIPSLLSCRDLMSCAQTGSGKTAAFLVPVI 112

Query: 60  STLLAENDRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           + ++                     P+ L ++PTRELA+Q  +E      +T V+ AV  
Sbjct: 113 NHIIRNESTTMRMPQVMSTSRRTVFPVVLILSPTRELAMQTHKEALKFAYRTNVISAVLY 172

Query: 110 G-GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           G   +   + + L  G H+++ TPGRL D +    +++   + +VLDEAD MLD+GF   
Sbjct: 173 GGRENYRDQVQKLTLGCHLLIATPGRLLDVMSQNVVSLHDCRFLVLDEADRMLDMGFEPQ 232

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYR 222
           I  I++     ++    +A  S       +   +D +  N          +   + +   
Sbjct: 233 IRQIVECHSMPKKGQRVTAMFSATFPKEIQILAQDFLMANYVFLAVGRVGSTSENIVQKI 292

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             +     +   +  +        A+VF  T+   +     L  + + V+ + G+L Q E
Sbjct: 293 IWVEEHDKKRLLMELLDIDVNRGLALVFVETKRGANDLAWYLQRNNYNVMPIHGDLKQYE 352

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R   L+M R G+  + +AT VAARG+D+P+++ VI+ +L ++ +  +HR GRTGRAG  G
Sbjct: 353 RERHLEMFRSGQTNILVATAVAARGLDIPNVKHVINFDLPTDIDEYVHRIGRTGRAGNIG 412

Query: 343 MSVFVIP---QNMQRRAERLFREANVSVVW 369
           ++        +N+ R    L  E+N  V  
Sbjct: 413 LATSFFTDRNRNISRDLMDLLVESNQEVPE 442


>gi|195475588|ref|XP_002090066.1| GE20836 [Drosophila yakuba]
 gi|194176167|gb|EDW89778.1| GE20836 [Drosophila yakuba]
          Length = 1464

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 173/376 (46%), Gaps = 8/376 (2%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            ++ FE+  +  +I E +++ GY   T +Q+  +      +D++  AQTGSGKT AF + +
Sbjct: 1047 IRNFEHAELRDIIRENVTKSGYTVPTPIQKVSIPVIAAGRDLMACAQTGSGKTAAFLVPI 1106

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             S LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG S   + 
Sbjct: 1107 LSKLLDDPQDLEFGK-PQAVIVSPTRELAIQIFSEARKFAFESYLKISIVYGGTSFKHQN 1165

Query: 119  RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FILDSSP 177
              +  G H+++ TPGRL D +    +     + VVLDEAD MLD+GF + +  F+   + 
Sbjct: 1166 ECITKGCHVLIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSESMRKFMNHQTM 1225

Query: 178  KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +     +  +   P            +                 + +         + + 
Sbjct: 1226 RPEHQTLMFSATFPEEIQRLAGEFLKSYVFVTIGVVGGACSDVQQTIYEVNKFAKRSKLM 1285

Query: 238  ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +    A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V
Sbjct: 1286 EILREQADGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKNGSMKV 1345

Query: 298  CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR--- 354
             IAT VAARG+D+ +++ V++ ++ +N ++ +HR GRTGR G  G +      +  +   
Sbjct: 1346 IIATSVAARGLDIKNIKHVVNFDMPNNIDDYVHRIGRTGRVGNNGRATSFFDPDQDQALA 1405

Query: 355  -RAERLFREANVSVVW 369
                ++   +  +V  
Sbjct: 1406 GDLIKILEGSGQTVPE 1421


>gi|163750898|ref|ZP_02158131.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
 gi|161329322|gb|EDQ00319.1| ATP-dependent RNA helicase DbpA [Shewanella benthica KT99]
          Length = 458

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 131/368 (35%), Positives = 204/368 (55%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY ++T++Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKPELIDNLKTMGYDSMTAIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                     +L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 68  ------FCIQSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+  + LN+ ++  +VLDEAD ML++GF  D+++I+   P++R+ L+F
Sbjct: 122 HIIVGTPGRIIDHLSRELLNLENVNTLVLDEADRMLEMGFLPDLDYIMAEMPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+    + V V +AS +   S   +   + +  DR  A+  +L  H   
Sbjct: 182 SATFPKQIQKVAEQIMFEPVMVKVASTHDSSSIEQHFYQIDSNKDRPKALRLLLLQHRPD 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         LA   F VVAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 242 SAVVFCNTKRETKEVAATLASDGFSVVALHGDLEQRDRDITLMQFANKSASIMVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++VI+ EL+ + E  +HR GRTGRAG KGM++     +   + + L      
Sbjct: 302 RGLDIEALDMVINYELAFDTEVHIHRIGRTGRAGSKGMALTFYTYDDDYKIKLLEEYLER 361

Query: 366 SVVWEPAP 373
            +V E  P
Sbjct: 362 DIVSEGLP 369



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L    GI    +G I++    ++V V           +
Sbjct: 383 MVTIQIEGGKKNKVRPGDILGALTGEDGIQGSEVGKIKITEFRSYVAVDRKVAKRALHKI 442

Query: 526 KLDK 529
              K
Sbjct: 443 VNGK 446


>gi|19528473|gb|AAL90351.1| RE28061p [Drosophila melanogaster]
          Length = 798

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 186/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 294 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 413

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 414 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 473

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  +   + +        +I    + 
Sbjct: 474 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYTFLAVGRVGSTSENITQTILW 533

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 534 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 593

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 594 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 653

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 654 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 686


>gi|323497181|ref|ZP_08102201.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
 gi|323317756|gb|EGA70747.1| ATP-dependent RNA helicase DbpA [Vibrio sinaloensis DSM 21326]
          Length = 458

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 215/408 (52%), Gaps = 15/408 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+ +     + E ++  GY  +T +Q+  L   L  KDV+   +TGSGKT  F L + 
Sbjct: 3   QSFKTLSLRPELLETVASLGYSEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGVL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 63  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD MLD+GF D I+ I+ ++P 
Sbjct: 117 GSLEHGAHILVGTPGRILDHLSKGRINLDELNTLVLDEADRMLDMGFEDAIDAIISAAPT 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I TLA+    +   V + S +   +       L    ++DNA+  +
Sbjct: 177 QRQSLLFSATFPANIKTLAEKVMSEPEMVKVESTHETTTIEQRFYALEGSEEKDNALETL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++++VFC+T+  V   T  L    F VV L G++ Q+ER  AL M  +    + 
Sbjct: 237 LLVHKPESSVVFCNTKKEVQNVTDELNHRGFSVVELHGDMEQREREQALTMFANKSVSIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R ER
Sbjct: 297 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFYSEKEHYRVER 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +     +     P P      E+  +R     +    I G +K+ V  
Sbjct: 357 IEDYMALDFNASPLP------EKPVERPFYPKMQTIQILGGKKQKVRA 398



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G KQK  A  ++  L + +GI+ + IG I +   +++V V  D V    
Sbjct: 380 YPKMQTIQILGGKKQKVRAGDILGALTKQAGIDGKKIGKINILAMVSYVAVEHDVVKKAL 439

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 440 KQLQTGK 446


>gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
          Length = 488

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 224/401 (55%), Gaps = 10/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+S+ GY  LT +Q   +   L  +D++ +AQTG+GKT AF L +   LL   
Sbjct: 22  LDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLA 81

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL +APTRELA QV   L+     T +  A   GG+ +  ++ +L+ G
Sbjct: 82  STSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+  K +N+  ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 142 VDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA++Y ++ + V +A  N   ++++ R   V   D+   +V +LR +  
Sbjct: 202 FSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPL 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF ++R    R T++L     +  A+ G+ SQ ER   L+  + G  +  +ATDVA
Sbjct: 262 PQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAE 357
           ARG+D+ +L  V++ ++  + E+ +HR GRTGRAG  G+++ +          ++++  +
Sbjct: 322 ARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIK 381

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           R F +  VS+   P P  +A  E    RI + P  L S  G
Sbjct: 382 RQFEKQTVSLERAPRPRRDA-DETREHRIARAPRALPSDTG 421


>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
 gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
          Length = 488

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 224/401 (55%), Gaps = 10/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+S+ GY  LT +Q   +   L  +D++ +AQTG+GKT AF L +   LL   
Sbjct: 22  LDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQTGTGKTAAFSLPILQQLLPLA 81

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +   SPA  P+ AL +APTRELA QV   L+     T +  A   GG+ +  ++ +L+ G
Sbjct: 82  STSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPLRCACVFGGMDMAPQKAELRTG 141

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL DH+  K +N+  ++ VVLDEAD MLD+GF  D++ IL   PK+R  L+
Sbjct: 142 VDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDIGFLPDLQRILGFLPKQRTTLL 201

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  I  LA++Y ++ + V +A  N   ++++ R   V   D+   +V +LR +  
Sbjct: 202 FSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRVYQVEEDDKRATLVQLLRDNPL 261

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF ++R    R T++L     +  A+ G+ SQ ER   L+  + G  +  +ATDVA
Sbjct: 262 PQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVA 321

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-------QNMQRRAE 357
           ARG+D+ +L  V++ ++  + E+ +HR GRTGRAG  G+++ +          ++++  +
Sbjct: 322 ARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGLAITLATARDARSLADIEKLIK 381

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           R F +  VS+   P P  +A  E    RI + P  L S  G
Sbjct: 382 RQFEKQTVSLERAPRPRRDA-DETREHRIARAPRALPSDTG 421


>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
 gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
           10500]
          Length = 478

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/407 (30%), Positives = 205/407 (50%), Gaps = 12/407 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+++   PQ + EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +
Sbjct: 52  KTFKDLGLIPQ-LCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPI 110

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +   F        L +APTRELA Q+    E L +   V   V +GG+ +  + 
Sbjct: 111 LQALMDKPQPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQA 164

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   I+ IL   P
Sbjct: 165 IAIGKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLP 224

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIV 236
           ++RR  +FSAT+S  +  L +    + +RV+++S   Q         + +    +D  ++
Sbjct: 225 RERRTFLFSATMSSKVEGLQRASLSNPLRVSVSSNKYQTVSTLLQYYLFIPHKHKDVHLI 284

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H  ++ I+F  T     R T +     F  +AL G+LSQ  R  AL   R     
Sbjct: 285 WLLNEHVGQSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRD 344

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+P ++LV++ +L+++ +  +HR GRT RAG+ G ++ ++ Q      
Sbjct: 345 ILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVW 404

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            R+ +  +  +        E +   D     Q     +    DE+K 
Sbjct: 405 LRIEKALDRKLPEYKVEKEEVLILSDRVAEAQRQAITELKDLDERKN 451


>gi|195330652|ref|XP_002032017.1| GM26328 [Drosophila sechellia]
 gi|194120960|gb|EDW43003.1| GM26328 [Drosophila sechellia]
          Length = 797

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 293 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 352

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 353 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 412

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 413 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 472

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 473 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 532

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 533 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 592

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 593 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 652

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 653 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 685


>gi|58584965|ref|YP_198538.1| superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419281|gb|AAW71296.1| Superfamily II DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 408

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 196/367 (53%), Gaps = 10/367 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +P ++ +AL +  +   T VQ   +   L+ KD+L SAQTG+GKT+AF + L
Sbjct: 1   MNSFYEMGLPLLLAQALDKNSFSVPTPVQAQAIPLALKGKDILGSAQTGTGKTLAFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRE 117
            + LL E       +A  AL I PTRELA QV  E+ + L   + + +A+ IGG  + R+
Sbjct: 61  IAKLLGEP------NASTALVIVPTRELAQQVTNEIGKLLLKNSVLKIALLIGGEPIFRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              LQ    IV+GTPGR+ DHI  K L  +++  +VLDE D M D+GF   IE I+   P
Sbjct: 115 LNQLQRRPRIVIGTPGRIIDHIERKTLITNNVSTLVLDEVDRMFDMGFGIQIEGIMKYLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ LMFSAT+   I  LA+ Y     RV++ +E      I    +  + S++   +V 
Sbjct: 175 KMRQNLMFSATLPGDIVKLAEKYSNQPERVSVENEATTSVKIKQEIIYASESEKYGKLVT 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L        IVF  T+    +    L +     +A+ G+L Q++R   +   R G  ++
Sbjct: 235 QLYQRKGS-IIVFVRTKQRADQLAYKLRKDNHSALAIHGDLKQRKRKRVINSFRRGHNQI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+P ++ VI+ +   +  N +HR+GRT RAG +G ++  I    ++R  
Sbjct: 294 MVATDVASRGLDIPHIQHVINYDAPESQANYIHRTGRTARAGAEGYALSFITSQDKKRLP 353

Query: 358 RLFREAN 364
            L  +  
Sbjct: 354 TLTDKKG 360


>gi|18857967|ref|NP_572424.1| CG10777 [Drosophila melanogaster]
 gi|7290853|gb|AAF46295.1| CG10777 [Drosophila melanogaster]
 gi|16648356|gb|AAL25443.1| LD32873p [Drosophila melanogaster]
 gi|220947598|gb|ACL86342.1| CG10777-PB [synthetic construct]
          Length = 945

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L    
Sbjct: 238 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 297

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRER 118
            +  +         P+AL +APTRELA Q+   +                 GG S   + 
Sbjct: 298 HIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 356

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 357 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 416

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V 
Sbjct: 417 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 476

Query: 238 ILRYHGA--------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +L                IVF  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 477 LLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 536

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 537 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 596

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 597 PDNAKQARELISVLEEAGQT 616


>gi|93006205|ref|YP_580642.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393883|gb|ABE75158.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 552

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 195/369 (52%), Gaps = 8/369 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + I  AL   GY N T +Q   +   L  +D+L+SAQTGSGKT AF + +  
Sbjct: 39  TFTDLGIAKPILTALDRSGYTNPTPIQAQAIPFALAGRDLLLSAQTGSGKTAAFVIPVLD 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L   +   S      AL + PTRELA QV   +         +  V  +GG   + +  
Sbjct: 99  RL---SRATSFDKLTKALILTPTRELAQQVHDSVRTYSKDMRGLFCVPLVGGAPYNGQIT 155

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V TPGRL DHI    +++S L+ +VLDEAD MLD+GF DDI  IL ++P  
Sbjct: 156 ALKKGVQVIVATPGRLLDHINAGRVDLSSLEILVLDEADRMLDMGFADDISDILRAAPTD 215

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +M SAT    +  +A ++ K+  RV+I  E+    +            ++  +  I+
Sbjct: 216 RQTIMCSATWDGPVGKIAASFTKNPERVSIKVESAHIEEKV--YYCDDFDHKNRLLDKIV 273

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+ S  +  K L E   +   L G+L Q +R+  +Q +R+G+ ++ +
Sbjct: 274 CQQDMEQIIIFAATKRSTEKLAKQLQEAGHKASFLHGDLPQSKRNRIVQDLRNGKVKILV 333

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P +  VI+ +L    E+ +HR GR GRAGR G+++ +   + + +   +
Sbjct: 334 ATDVAARGLDIPAISHVINYDLPRQTEDYVHRIGRCGRAGRTGIAISLCSMDDRPQLNAI 393

Query: 360 FREANVSVV 368
            R  +  + 
Sbjct: 394 NRYLDRKME 402


>gi|170756598|ref|YP_001781574.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169121810|gb|ACA45646.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 376

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L ++  +  T +Q+  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKKQRIIEPTPIQKESIMLIKNGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +       +A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPD------INAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGM 354

Query: 359 LFREANVSVVWEPAPSVEA 377
           + RE    +  +   + + 
Sbjct: 355 IEREIKFKIPRKTLTNSKE 373


>gi|182416631|ref|ZP_02948044.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237668564|ref|ZP_04528548.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379523|gb|EDT77009.1| cold-shock deAd box protein a [Clostridium butyricum 5521]
 gi|237656912|gb|EEP54468.1| putative helicase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 369

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 107/363 (29%), Positives = 184/363 (50%), Gaps = 6/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + + L++ G    T +QE  +      KD++  A TG+GKT+AF L +   +  ++
Sbjct: 8   ICKELVDILNKNGISAPTPIQEESIEIIKNGKDIIAEAGTGTGKTLAFLLPIFEQINPKS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+Q+  E + L     + V  C GG  +  + + L     
Sbjct: 68  KDV------QALILTPTRELALQITNEADKLNEDKKINVLACYGGKDISSQLKKLNKNVQ 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DHI  K +++  +K  VLDEAD+ML +GF++++E I++   KK++ML FS
Sbjct: 122 LIVATPGRLLDHIERKTIDLKTVKTFVLDEADQMLFMGFKNEVEKIMEQMSKKKQMLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA  Y  D   +++  E      I    V      + +A+  +L       
Sbjct: 182 ATMDSEVKKLAYRYMNDPAIISVKKEEVDMHSIKQFVVETTDRQKRDALCKVLDEDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+        V+A   +    +  +++Q +R   ++  R+ + +  IATDVAAR
Sbjct: 242 AIIFCRTKRRADDLETVMATRKYNCAKIHSDIAQNKRERIMKSFREAKLQYLIATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++   PE+ +HR GRTGRAG  G++   +    +R  E +       
Sbjct: 302 GLDITGVTHIYNYDIPETPESYVHRIGRTGRAGESGITCMFVDPKNKRALEEIEDTIGFK 361

Query: 367 VVW 369
           +  
Sbjct: 362 IPR 364


>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 540

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 195/379 (51%), Gaps = 11/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +  I   I  AL+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L
Sbjct: 32  VQSFSDFAIHPDIVSALAAHGITTPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPL 91

Query: 59  ASTLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + ++A  D     F     P ALA+APTRELAVQV  +LE      G+ V    GG + 
Sbjct: 92  LNKVIARGDDKWDGFVHKGKPQALAVAPTRELAVQVSADLERAGKARGIRVLTVYGGRAY 151

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L  G  +VVGTPGRL D  +   L++SH K VVLDEADEMLDLGF  D+E +L 
Sbjct: 152 EPQIDALTKGVEVVVGTPGRLIDLAKQGHLDLSHAKTVVLDEADEMLDLGFLPDVEKLLA 211

Query: 175 SSPKKRRMLMFSATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
            +   R+ ++FSAT+  A        + +     A++      ++    I          
Sbjct: 212 MTSPGRQTMLFSATMPGAVVALARRYMTQPTHIRAMQEGEGDTSQTVKAITQHVYRAHAM 271

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+   +  +L+ +G    IVF  T+ + ++    LAE  F   A+ G+L Q  R  AL+ 
Sbjct: 272 DKVEMLARMLQANGRGLTIVFSRTKRTAAKVADDLAERGFAAAAIHGDLGQGAREQALRA 331

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G+  V +ATDVAARGID+ ++  VI+ +   + +  +HR GRTGRAG+ G++V  + 
Sbjct: 332 FRSGKVDVLVATDVAARGIDVENVTHVINYQCPEDEKTYVHRIGRTGRAGQTGIAVTFVD 391

Query: 350 QNMQRRAERLFREANVSVV 368
            +   R   + +  ++ + 
Sbjct: 392 WDDLHRWTMINKTLDLGIP 410


>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 39  VKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 99  IVHIM-DQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQF 157

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IVV TPGRL D ++ K L +      VLDEAD M DLGF   I  I+     
Sbjct: 158 KELKSGCEIVVATPGRLIDLLKMKALRMFRATYSVLDEADRMFDLGFEPQIRSIVGQIRP 217

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 218 DRQTLLFSATMPYKVERLAREILTDLIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLE 277

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF + +A V      L +H F+V AL G+  Q  R   LQ  + G   
Sbjct: 278 KMPGMIDDGDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYH 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 338 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRF 397

Query: 356 AERL---FREANVSVVWE 370
           A  L      A   V  E
Sbjct: 398 AGELVHSLIAAGQDVPNE 415


>gi|238836384|gb|ACR61400.1| vasa [Ctenopharyngodon idella]
          Length = 670

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 183/372 (49%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 232 IMTFDEAKLCESLSKNVTKSGYVKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFLLPI 291

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               + +     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 292 LQRFMTDGVAASKFSEVQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTG 351

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +++ GTPGRL D I    + +S L+ ++LDEAD MLD+GF  D+      
Sbjct: 352 YTIREVLKGCNVLCGTPGRLLDIIGRGKVGLSKLRYLILDEADRMLDMGFEPDMRKLVGS 411

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + +   ++ ++  +          A+  + D + + +       SD++   + V    
Sbjct: 412 PGMPAKEDRQTLMFSATFPEEIQRLAAEFLKVDYLFLAVGVVGGACSDVEQTIIQVDQYS 471

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +L+  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 472 KREQLLELLKTTGTERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDF 531

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ +L +N +  +HR GRTGR G  G +V    P
Sbjct: 532 RTGQCPVLVATSVAARGLDIEHVQHVVNFDLPNNIDEYVHRIGRTGRCGNIGRAVSFFNP 591

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 592 ESDTPLARSLVK 603


>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
 gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Penicillium marneffei ATCC
           18224]
          Length = 474

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/404 (29%), Positives = 203/404 (50%), Gaps = 12/404 (2%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F+++   PQ + EA    GY   T++Q   +   L+ +D++  A+TGSGKT AF L +
Sbjct: 45  KTFKDLGLIPQ-LCEACETLGYKAPTAIQAESIPLALQNRDLIGLAETGSGKTAAFALPI 103

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ +   F        L +APTRELA Q+    E L +   V   V +GG+ +  + 
Sbjct: 104 LQALMDKPQPF------FGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQA 157

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +    HI+V TPGRL DH+      ++  LK +V+DEAD +LD+ F   I+ IL   P
Sbjct: 158 IAIGKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLP 217

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIV 236
           ++RR  +FSAT+S  + +L +    + +RV+++S   Q         + +    +D  ++
Sbjct: 218 RERRTFLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQYYMFIPHKHKDVHLI 277

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H  +  I+F  T    +R   +     F  +AL G+LSQ  R  ++   R     
Sbjct: 278 WLLNEHIGQTTIIFTRTIHETNRLALLTRFLGFSAIALHGQLSQSSRLASISKFRSKTRS 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+P ++LV++ +L+++ +  +HR GRT RAG+ G ++ ++ Q      
Sbjct: 338 ILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVW 397

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            R+ +  +  +        E +   D     Q     +    DE
Sbjct: 398 LRIEKALDKKLPEYKVEKDEVLILSDRVSEAQRQAITELKDMDE 441


>gi|212537643|ref|XP_002148977.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210068719|gb|EEA22810.1| ATP dependent RNA helicase (Dbp1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 692

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 191/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 195 VNTFTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI 254

Query: 59  ASTLLAEND-------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S                         + P +L +APTREL  Q+  E      ++ V  
Sbjct: 255 LSQAFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 314

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    ++++++K +VLDEAD MLD+GF
Sbjct: 315 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLTNIKYLVLDEADRMLDMGF 374

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 375 EPQIRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 434

Query: 222 RAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R   V   D+ + +++IL  HG+    ++F  T+         L    F   A+ G+ +Q
Sbjct: 435 RIEYVEDHDKRSVLLDILHTHGSTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQ 494

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL+M R+ R  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG 
Sbjct: 495 RERERALEMFRNARCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 554

Query: 341 KGMSVFVIPQNMQ---RRAERLFREANVSVV 368
            G++     +  +   R    L +EAN  V 
Sbjct: 555 TGIATAFFNRGNRGVVRDLIDLLKEANQEVP 585


>gi|320590131|gb|EFX02574.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 713

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 192/386 (49%), Gaps = 20/386 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 219 TFTNPPLDDHLIHNIELAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 278

Query: 61  TLLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
                     P              P +L +APTREL  Q+  E      ++ V   V  
Sbjct: 279 QAFITGPSVVPNGQAGNFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVY 338

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I
Sbjct: 339 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQI 398

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I          +R+ LMFSAT    I  LA+++ KD V +++        +I  +   
Sbjct: 399 RRIVEGEDMPGVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY 458

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  +D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER  
Sbjct: 459 VEDNDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERER 518

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+M R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G+S 
Sbjct: 519 ALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 578

Query: 346 FVIPQNMQ---RRAERLFREANVSVV 368
               +  +   R    L +EAN  V 
Sbjct: 579 AFFNRGNRGVVRELIDLLKEANQEVP 604


>gi|319425941|gb|ADV54015.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 449

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 197/424 (46%), Gaps = 10/424 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGITAPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF   ++ I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLILDEADRMLDLGFAPQLKTINEAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +  A     AS +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINDIAATLLKNPAHVAIDASHSEHNDIHQRIFLCDHLDHKEALLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  IVF +TR    R    L+   F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLQDETHKQVIVFTATRPDTERLAAKLSTQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEA----IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +++      +      P +EA    ++E   Q  ++      +  G  K          D
Sbjct: 359 KKVQIFLRKTFEISVIPGLEAKFRGLKELSKQTPIKRVAKTSTSAGKTKAKAVKAPPSRD 418

Query: 413 PEKI 416
              I
Sbjct: 419 KRFI 422


>gi|163748720|ref|ZP_02155973.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161331830|gb|EDQ02634.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 438

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 198/366 (54%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+E G+   T +Q A L   L++KD+   AQTG+GKT+AF +A    LL+ 
Sbjct: 15  SLHEGIKTALNESGFEFCTPIQAASLPILLQKKDIAGQAQTGTGKTLAFLVATFEHLLSS 74

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   + P A+ +APTRELA+Q+ R+   L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PIPEGRQLNQPRAMIMAPTRELAIQIARDATLLAKHTGLKVGIVYGGESYEVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRM 182
             I++GT GR+ D++R   +N+S ++ VVLDEAD M DLGF  DI F+    P    R  
Sbjct: 135 IDILIGTTGRIIDYVRQGIINLSAIQVVVLDEADRMFDLGFIKDIRFLFRRMPDAKLRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AI+F +T+ S       L+    +V  L+G++ Q++R   L+    G     +ATD
Sbjct: 255 WPEKAIIFSNTKHSCENVWSWLSGDGHRVGLLTGDVPQKKRIRILEQFTTGELDFLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + D+  V + +L  + E+ +HR GRTGR G+KG+S+    +        +   
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRVGKKGVSISFACEEYAMNLPAIEEF 374

Query: 363 ANVSVV 368
              S+ 
Sbjct: 375 IAHSIP 380


>gi|118097368|ref|XP_425202.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Gallus gallus]
          Length = 617

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 175 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 234

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    +E+            +  A+CIG
Sbjct: 235 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIG 294

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 295 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 354

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 355 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEA 414

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 415 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 473

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           RDG+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 474 RDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 533

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 534 ACDESVLMDLKALLLEAKQKVPP 556


>gi|94311500|ref|YP_584710.1| DEAD/DEAH box helicase-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355352|gb|ABF09441.1| ATP-dependent RNA helicase [Cupriavidus metallidurans CH34]
          Length = 634

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/391 (35%), Positives = 203/391 (51%), Gaps = 17/391 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL+E  Y   T VQ   +   L  +D+LVS+QTGSGKT AF L     +    
Sbjct: 56  LDAAILRALAEANYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLPAIQRISEKP 115

Query: 63  ----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIG 110
                       +  R  P+ A P  L + PTRELA+QV             +  A  +G
Sbjct: 116 ATHRPTEPAKRMKGKRPRPSPAQPSLLVLTPTRELALQVTEAAAKYGRHLRRIVCASILG 175

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+   ++   L     I+V TPGRL DHI    +++S L+ +V DEAD MLD+GF DDI+
Sbjct: 176 GMPYPKQLAMLARMPDILVATPGRLLDHIEAGRIDLSALEMLVFDEADRMLDMGFADDID 235

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALS 229
            I+ ++P  R+ LMFSAT+   I  LA    +D  R+ IA+    HS+I+ R      +S
Sbjct: 236 AIVAATPASRQTLMFSATLDARIAQLASRQLRDPQRIEIAAARADHSNIEQRLHFTDDMS 295

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            ++  + ++LR    K AIVF +T+       + L++  F   AL G+++Q  R+  L  
Sbjct: 296 HKERLLDHLLRDASLKQAIVFTATKRDADSLAERLSDTGFSAGALHGDMTQGARNRTLTA 355

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +R G  RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ ++ 
Sbjct: 356 LRRGNLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGVAINLVN 415

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
                +  R+ R  N  +        E  R 
Sbjct: 416 HGDMFQWRRIERFTNNRIDASVIEGFEPRRS 446


>gi|298704856|emb|CBJ28373.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 519

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 178/363 (49%), Gaps = 5/363 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P+ +   + ++G+   T +Q       L  +D++  + TGSGKT+AF L    
Sbjct: 127 TFEEASMPEYVLREVMKQGFSAPTPIQSQGWPMALLGRDMVGISATGSGKTLAFLLPAMI 186

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+         P+ L +APTRELAVQ+  E +     + +      GGV    +  D
Sbjct: 187 HINAQ-PYLEQGDGPIVLVVAPTRELAVQIKEECDKFGRSSEIKNTCVYGGVPKRIQVND 245

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+      R
Sbjct: 246 LNRGVEIVIATPGRLIDLLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 305

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LM+SAT    +  LA+++     +V + S     +    + +           ++   
Sbjct: 306 QTLMWSATWPKEVQALARDFLHHYYQVTVGSLELAANKDIKQIIECTEDFNKYRSLSKHL 365

Query: 241 YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                N   +VF  T+      T+ L +  +Q   + G+ +Q+ER   L+  + G  +V 
Sbjct: 366 QQHGHNGKVLVFVETKKGCDALTRSLRQDGYQARCIHGDKTQEERDYVLKDFKGGNFQVL 425

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+++VI+ +  +N E+ +HR GR GRAG KG++V        R    
Sbjct: 426 VATDVAARGLDVKDIQMVINFDFPNNMEDYIHRIGRCGRAGAKGVAVSFFGSKNSRNGRE 485

Query: 359 LFR 361
           L +
Sbjct: 486 LIK 488


>gi|82569452|gb|ABB83368.1| VASA-like protein [Pleurodeles waltl]
          Length = 463

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 187/381 (49%), Gaps = 15/381 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+P+ +   +S+ GYV LT VQ+  +   L ++D++  AQTGSGKT AF L + +
Sbjct: 31  TFEEANLPETLNRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILA 90

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            ++ +           P A+ +APTREL  Q+  +       T +   V  GG       
Sbjct: 91  HMMRDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSL 150

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G +I+  TPGRL D I+ + + ++ L+ +VLDEAD MLD+GF  D++ +++S   
Sbjct: 151 RQIYQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGM 210

Query: 179 KRRMLMFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             +    +   S       +       + D + V +       SD++   + V    + +
Sbjct: 211 PSKEDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKD 270

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G
Sbjct: 271 KLVEILQGLGIERTMVFVKTKKRADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFG 330

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G  G ++     +  
Sbjct: 331 KCNVLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDN 390

Query: 354 ------RRAERLFREANVSVV 368
                 R   ++  +A   V 
Sbjct: 391 EDRTVARSLVKVLSDAQQEVP 411


>gi|332992020|gb|AEF02075.1| ATP-dependent RNA helicase [Alteromonas sp. SN2]
          Length = 414

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 181/355 (50%), Gaps = 2/355 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   ++E+GY   + +Q+  +   L ++D++  AQTG+GKT +F L +   LLA+ 
Sbjct: 8   LCTELLNTVAEKGYTTPSPIQQEAIPAILSKQDLIAIAQTGTGKTASFSLPILQ-LLADK 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P +   AL IAPTRELA QV + +E       V      GGV +  ++  L  G  
Sbjct: 67  PRSEP-NCVRALIIAPTRELAAQVAQNVEQYSQNLKVRSTAVFGGVRIEPQKYALAQGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D      +N  HL+ +VLDEAD MLDLGF D I  I    P+KR+ L+FS
Sbjct: 126 ILIATPGRLLDLYEQGDINFEHLEILVLDEADRMLDLGFIDHIHHIQKLLPEKRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I TLA         + +A        I      V    ++  +++++  +    
Sbjct: 186 ATFSKEIKTLATTMLNTPKTIELARAKDHIEKITQILHPVDKERKNELLIHLIENNDWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L        ++    +QQ R+ AL   RDG  +V I TD+AAR
Sbjct: 246 ILVFTRTKRGADELRNELEAKGIVAESIHANRTQQARTLALNGFRDGSIKVLIGTDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GID+  L  VI+ +L    E+ +HR GRTGRA  +G+++ +   +  ++ + + R
Sbjct: 306 GIDIQQLPCVINVDLPYVAEDYIHRIGRTGRASSEGLAISLFSDDEAKQLKTIER 360


>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
          Length = 496

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 204/482 (42%), Gaps = 25/482 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   GY   T +Q   +   +   D++  AQTG+GKT AF L +   L+   
Sbjct: 8   LHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILHRLITNP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     +P  L +APTRELA Q+ R        T +   V  GGV +  + R L+ G  
Sbjct: 68  AR---TRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V  PGRL DH+    +    L+ +VLDEAD M D+GF  DI+ IL + P KR+ L+FS
Sbjct: 125 VIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ PAI +                     S +++    V+ + +   ++++L   G ++
Sbjct: 185 ATMPPAI-SGLAAETLTDPVTVRIGHLAPLSTVEHAIYPVSHNQKAPLLLHLLGEAGKES 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L     +   L G LSQ++R  A+   R G  ++ +ATD+AAR
Sbjct: 244 VIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVATDIAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ ++    E   HR GRTGRA R G +   +          +       
Sbjct: 304 GIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIESHMKKP 363

Query: 367 VV------WEPAPSVEAIRERDAQRILQDP-----LFLDSIQGDEKKMVDVLLAKHD--- 412
           +       +EP P  E  R   A R    P            GD ++  D          
Sbjct: 364 LPRRNVEGFEPEPG-EFRRSAPAPRSAARPRQGYGAPRQGGYGDRQRQGDRPYGDRPRGP 422

Query: 413 -PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR-----DDSRAFKVGGGSRDNFKGS 466
            PE   A   R  R     P    P +     DR R      D R    G G  DN  G+
Sbjct: 423 RPEGARADSARDDRPRSDRPRSDRPAADRPRSDRPRTERQPSDERRSTFGLGGADNRSGN 482

Query: 467 SW 468
             
Sbjct: 483 QR 484


>gi|145636978|ref|ZP_01792642.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
 gi|145269836|gb|EDK09775.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|99032027|pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032028|pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032029|pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
 gi|99032030|pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
           Drosophila Vasa
          Length = 434

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 178/369 (48%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 62  DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 122 PHELELGR-PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 180

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-- 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+     +      
Sbjct: 181 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 240

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K+ V V I       SD+      V    + +  +  +    
Sbjct: 241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK-LIEILSEQ 299

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 359

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERL 359
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTGR G  G +         R       ++
Sbjct: 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKI 419

Query: 360 FREANVSVV 368
              +  +V 
Sbjct: 420 LEGSGQTVP 428


>gi|124491306|gb|ABN12944.1| Lia2p [Tetrahymena thermophila]
          Length = 522

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/482 (25%), Positives = 209/482 (43%), Gaps = 16/482 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + PQ I   ++   +   + +Q       L   D++  A+TGSGKT++F L     + A+
Sbjct: 31  HFPQYIMNEVTHAKFEKPSPIQSLAFPVVLSGHDLIGIAETGSGKTLSFLLPSIVHINAQ 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA+Q+ RE E     + +  A   GG   + +R  LQ G 
Sbjct: 91  -PTVKKGDGPIVLVLAPTRELAMQIERESERFGKSSKLKCACIYGGADKYSQRALLQQGV 149

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D +  +   +  +  +VLDEAD MLD+GF   I  IL      R+ LMF
Sbjct: 150 DVVIATPGRLIDFLESETTTLRRVTYLVLDEADRMLDMGFEIQIRKILGQIRPDRQTLMF 209

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI-LRYH 242
           SAT    +  LA++Y K+        ++    +  I     +   S + N ++       
Sbjct: 210 SATWPKNVQNLAQDYCKNTPVYVQIGKHELAINERIKQIVYVTDQSKKINQLIKQLDCLT 269

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+      +++L +  F+ +A+ G+ +Q++R   +   + G  R+ IATD
Sbjct: 270 QKDKVLIFAQTKKGCESMSRILNKEGFKCLAIHGDKAQKDRDYVMNKFKSGECRILIATD 329

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---- 358
           VA+RG+D+ D+  V + +     E+ +H  GRTGRAG  G +V  +     ++  R    
Sbjct: 330 VASRGLDVKDVSHVFNYDFPKVMEDYVHSIGRTGRAGAYGCAVSFLTFEDDKKISREYVQ 389

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA- 417
           +  +A   +  +    + +I  R   +       + S   D KK      +K    +   
Sbjct: 390 MLHDAKQEIPIDLL-DLASINPRYRTQYKT----VSSSYYDIKKFNSADTSKPSENQNVS 444

Query: 418 --AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
             A     + +     +  +       R R R   ++       + N   S  +  S GS
Sbjct: 445 NTANSSDKYTSSSSYNQYKSKKDEDDKRSRSRSPYKSENNNRWDKYNRTKSPEYRSSNGS 504

Query: 476 KQ 477
             
Sbjct: 505 SH 506


>gi|302818865|ref|XP_002991105.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
 gi|300141199|gb|EFJ07913.1| hypothetical protein SELMODRAFT_132834 [Selaginella moellendorffii]
          Length = 601

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/398 (29%), Positives = 190/398 (47%), Gaps = 21/398 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  I   L E+     T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 155 IKNFKDMRFPDPILRKLKEKSITRPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPL 214

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L E    S      P  L + P+RELA Q    ++                 +CIG
Sbjct: 215 IMLALQEEQSSSLGGGEGPFGLVVCPSRELARQTFDVVQEFTNVLREKNYPELRSMLCIG 274

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  +   ++ G HIVV TPGRL D +  K +N+   K + LDEAD ++DLGF +DI 
Sbjct: 275 GIDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDRCKYLTLDEADRLIDLGFEEDIR 334

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   AK+     V VN+      + D+      V    
Sbjct: 335 EVFDHFKAQRQTLLFSATMPKKIQNFAKSALVKPVVVNVGRAGAANLDVIQEVEYVKQEA 394

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  ++ V    + L       VA+ G   Q+ER  A+   
Sbjct: 395 KIVYLLECLQKTPPP-VLIFCENKSDVDDIHEYLLVKGVGAVAIHGGKDQEEREYAIASF 453

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATD+A++G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I +
Sbjct: 454 KQGKKDVLVATDIASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATSFINK 513

Query: 351 NMQR----RAERLFREANVSVVW------EPAPSVEAI 378
           N         + L +EA   +        +P  +VE +
Sbjct: 514 NQSETILLDLKHLLKEARQRIPPVLATLDDPMDNVEEV 551


>gi|302307229|ref|NP_983823.2| ADL273Cp [Ashbya gossypii ATCC 10895]
 gi|299788899|gb|AAS51647.2| ADL273Cp [Ashbya gossypii ATCC 10895]
          Length = 623

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 15/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   + S   +  
Sbjct: 153 LDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNG 212

Query: 67  DRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +P  +        P A+ +APTRELA Q+  E +    ++ V   V  GG  + ++ 
Sbjct: 213 PASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQI 272

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILD 174
           R+L+ G  ++V TPGRL D +    +++  +K +VLDEAD MLD+GF   I         
Sbjct: 273 RELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDM 332

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            + + R+ LMFSAT    I  LA ++ KD + +++        +I  + + V   D+ + 
Sbjct: 333 PTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSV 392

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++++L        +VF  T+      T  L        A+ G+ +Q ER  AL   R GR
Sbjct: 393 LLDLLAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGR 452

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351
           A V +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        +N
Sbjct: 453 ANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKN 512

Query: 352 MQRRAERLFREANVSVV 368
           + +    +  EAN  V 
Sbjct: 513 VVKELVDILEEANQEVP 529


>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 669

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/415 (26%), Positives = 212/415 (51%), Gaps = 7/415 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   + + T +Q A +   L  +D+   A TG+GKT A+ L +   LL +
Sbjct: 161 NLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILERLLYK 220

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  S    L + PTREL VQV +  + L   T + + + +GG+ V  +   L+   
Sbjct: 221 PQ--GSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLRKQP 278

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH     G ++  ++ +VLDEAD MLD  F + ++ I+    + R+ ++
Sbjct: 279 DIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQTML 338

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++ A+  LA     + V++ + S     +++    + +       ++  +  ++R 
Sbjct: 339 FSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAALVRR 398

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N I+F +T++   +   +L     +   L G L Q ER + L+  ++G   + +AT
Sbjct: 399 TFRANCIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELDILVAT 458

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+ +L    E+ +HR GRT RAGR G+SV +  ++ ++  + + +
Sbjct: 459 DVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLVKEIVK 518

Query: 362 EANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +A   V     P    ++ ++  + + +D   +   + +E+ +    +  +  EK
Sbjct: 519 KAERPVKSRIIPPQILLKYKKKVEELGEDVDKVLKEELEERLLQKAEMQMNAMEK 573


>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Ciona intestinalis]
          Length = 718

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 213/453 (47%), Gaps = 19/453 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + +A+SE  YV  T +Q+A +   L  +D+   A TG+GKT AF L +   LL  
Sbjct: 177 NISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLERLLY- 235

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         L + PTRELAVQV      L   + + + +  GG+ +  +   L+ G 
Sbjct: 236 --RTQSTPITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAALRQGP 293

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH       ++  ++ ++LDEAD MLD  F D +  I+      R+ ++
Sbjct: 294 DIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHRQTML 353

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT+S  +  LA    K+ V++ + S       +    + +  +    R+  +  +   
Sbjct: 354 FSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAALCSR 413

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N +VF  T+    R   VL     +   L G LSQ +R  +L+  ++G   + + T
Sbjct: 414 SFISNVLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGDIDILVCT 473

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ +++ VI+  + +  ++ +HR GRT RAG+ G SV ++ +  ++  + + +
Sbjct: 474 DLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERKLLKEIVK 533

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A   V     P  + I +           F D +   E ++ DV+  +   +++ A   
Sbjct: 534 FAKNPVKSRVVP-PDVISK-----------FRDKLNEIESEVGDVMKMEAQEKQVIASEN 581

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++ +A      E             R+ ++A +
Sbjct: 582 QVKKAEKIIKGEAPEKRAWFQNKMQREFAKAER 614


>gi|170595924|ref|XP_001902572.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158589680|gb|EDP28579.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 658

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 173/371 (46%), Gaps = 2/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y + T +Q   +   L  +DVL  A+TGSGKTVA+       ++ + 
Sbjct: 143 FDEALMNVIRKSEYEHPTPIQAQSIPAALSGRDVLGIAKTGSGKTVAYLWPAIIHIMDQP 202

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D       P++L I PTRELA+QV +E +       + V    GG +   ++  L  GA 
Sbjct: 203 D-LKEGDGPISLVIVPTRELALQVYQEAKRYCKVYNINVVCAYGGGNKWEQQNALTEGAE 261

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGR+ D ++    N + +  +V DEAD M D+GF   ++ I D     R+ LMFS
Sbjct: 262 LVIATPGRIIDLVKINATNFTRVTFLVFDEADRMFDMGFEAQVQSISDHIRPDRQCLMFS 321

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAK 245
           AT    +  LA+    D VR+        +SD+     +      +   ++N L    + 
Sbjct: 322 ATFKSKVEKLAREALTDPVRIVQGEVGEANSDVIQTVEVLENADAKWQWLLNHLVKFSSM 381

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++   T+   +               L      Q   N         A + +ATDVAA
Sbjct: 382 GKVLIFVTKKIHAEDVANRLRTKDFKPILLHGDMLQAERNEKLQAFRKDANILVATDVAA 441

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P+++ VI+ +L+ + +  +HR GRTGRAG++G +  ++ ++ +  A  L R    
Sbjct: 442 RGLDIPEIKTVINFDLARDIDTHVHRIGRTGRAGQRGWAYTLVQESDKEMAGHLVRNLES 501

Query: 366 SVVWEPAPSVE 376
                P P ++
Sbjct: 502 VNQIVPEPLLQ 512


>gi|126291595|ref|XP_001381058.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 649

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 191/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 207 LKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 266

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+            +  A+CIG
Sbjct: 267 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPPLRCALCIG 326

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 327 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 386

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 387 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 446

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 447 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 505

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           RDG+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 506 RDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 565

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 566 ACDESVLMDLKALLLEAKQKVPP 588


>gi|74318833|ref|YP_316573.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74058328|gb|AAZ98768.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 533

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 217/473 (45%), Gaps = 27/473 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +  +I +++   GY N T VQ+  +   L   D+LVS+ TGSGKT AF L   
Sbjct: 1   MSFSELGLDPLILKSVLAAGYENATPVQQQAIPAALSGGDLLVSSHTGSGKTAAFLLPSI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRER 118
             LLAE    S    P  L + PTRELA+QV +       +      A  +GG     + 
Sbjct: 61  QRLLAEPAVKS--IGPRVLVLTPTRELALQVEKAAMTYGKEMRRFRTACLVGGAPYGLQL 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     +VV TPGRL DH+    ++ S L+ +VLDEAD MLD+GF DDI+ I    P 
Sbjct: 119 KRLSQPVDVVVATPGRLIDHLERGKIDFSRLEVLVLDEADRMLDMGFVDDIKAIAARCPA 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
           +R+ L+FSAT+   +  LA+   +DA R+ I +   + + I+ R +    +  ++  +  
Sbjct: 179 ERQTLLFSATLDGVVGNLARELTRDAQRIEIEAVPHKEAKIEQRLLFADNMDHKNRLLDA 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR      AIVF ST+ S    + +LAE  F   AL G++ Q +R+ ALQ +R+GR RV
Sbjct: 239 LLRDVEMVQAIVFASTKRSTEEISDLLAESGFASDALHGDMQQGQRNRALQRLREGRTRV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRAGR G++V           +
Sbjct: 299 LVATDVAARGIDVASISHVINFDLPRQAEDYVHRIGRTGRAGRTGIAVSFAGMREGGLVK 358

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + R     +     P +E  +     R        +  +G  +K               
Sbjct: 359 NIERYTGNRIEVHTLPGLEPTQRPSTGRPGNGRPRGNGPRGGYEKR-------------- 404

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--AFKVGGGSRDNFKGSSW 468
                        P           RD      R  A +  G     F     
Sbjct: 405 ------SFGDRSEPRSYGDRPRGDSRDNRDRGYRGDARRNDGAPARRFDNGVR 451


>gi|147902002|ref|NP_001081728.1| probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
 gi|82217454|sp|Q91372|DDX4_XENLA RecName: Full=Probable ATP-dependent RNA helicase DDX4; AltName:
           Full=DEAD box protein 4; AltName: Full=Vasa homolog;
           AltName: Full=Vasa-like protein; Short=xVLG1
 gi|2896107|gb|AAC03114.1| DEAD box protein [Xenopus laevis]
 gi|213623390|gb|AAI69679.1| DEAD box protein [Xenopus laevis]
 gi|213626590|gb|AAI69677.1| DEAD box protein [Xenopus laevis]
          Length = 700

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 14/380 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + +   ++  GYV LT VQ+  +   +  +D++  AQTGSGKT AF L + S
Sbjct: 275 TFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILS 334

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            ++ E     ++     P A+ IAPTREL  Q+  +       T V   V  GG+     
Sbjct: 335 YMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHA 394

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RD++ G +I+  TPGRL D +  + + +S L+ +VLDEAD MLD+GF  +IE ++    
Sbjct: 395 MRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMTKPG 454

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDRD 232
              +    +   S       +    + ++               SD+    + +  + + 
Sbjct: 455 MPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKM 514

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ IL+    +  ++F +T+         L +  F   ++ G+  Q +R +AL   R 
Sbjct: 515 EKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRT 574

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V + T VAARG+D+ +++ VI+ ++    +  +HR GRTGR G  G +        
Sbjct: 575 GKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQD 634

Query: 353 QRRAER----LFREANVSVV 368
                R    +  +A+  V 
Sbjct: 635 DHVIARPLVKILTDAHQEVP 654


>gi|74694613|sp|Q75B50|DED1_ASHGO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 623

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 191/377 (50%), Gaps = 15/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +    + +D++  AQTGSGKT  F   + S   +  
Sbjct: 153 LDELLLENIKLARFTKPTPVQKYSVPIVAKGRDLMACAQTGSGKTGGFLFPVLSQSFSNG 212

Query: 67  DRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +P  +        P A+ +APTRELA Q+  E +    ++ V   V  GG  + ++ 
Sbjct: 213 PASTPDESGYYMRKAYPTAVVLAPTRELATQIFDEAKKFTYRSWVKPCVVYGGADIRQQI 272

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILD 174
           R+L+ G  ++V TPGRL D +    +++  +K +VLDEAD MLD+GF   I         
Sbjct: 273 RELERGCDLIVATPGRLNDLLERGKISLCSVKYLVLDEADRMLDMGFEPQIRHIVEGCDM 332

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            + + R+ LMFSAT    I  LA ++ KD + +++        +I  + + V   D+ + 
Sbjct: 333 PTVENRQTLMFSATFPTDIQHLAADFLKDYIFLSVGRVGSTSENITQKVLHVEDIDKRSV 392

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++++L        +VF  T+      T  L        A+ G+ +Q ER  AL   R GR
Sbjct: 393 LLDLLAASDGGLTLVFVETKRMADALTDFLIMQNLSATAIHGDRTQAERERALAFFRTGR 452

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQN 351
           A V +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        +N
Sbjct: 453 ANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKN 512

Query: 352 MQRRAERLFREANVSVV 368
           + +    +  EAN  V 
Sbjct: 513 VVKELVDILEEANQEVP 529


>gi|67624705|ref|XP_668635.1| DEAD box protein [Cryptosporidium hominis TU502]
 gi|54659844|gb|EAL38406.1| DEAD box protein [Cryptosporidium hominis]
          Length = 441

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 192/370 (51%), Gaps = 9/370 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  A    G+   T +Q+  +   L  +D++  A+TGSGKT +F + +  
Sbjct: 29  TFASLGVCKELCIACESLGWKTPTEIQKKTIPVALEGRDIIGLAETGSGKTGSFIIPILQ 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +           A+ +APTREL VQ+  +     +   + +A  +GG+ +  +   
Sbjct: 89  RLLDDQVPM------YAVILAPTRELCVQISEQFSAFGSLISLKIATLVGGLDMVMQSLS 142

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+V +PGRL DH+      NI  +K +V+DEAD +L + F   +  I++SSPK 
Sbjct: 143 LAKKPHIIVASPGRLVDHLENTKGFNIGGIKFLVMDEADRLLSMDFEIALNKIVESSPKN 202

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L K    + +++ + ++    +++    + +    + +  + +L
Sbjct: 203 RTTYLFSATMTTKVAKLQKISLSNPIKICVNTKYDTAANLMQYYMFIPFKYKWSYFIGLL 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    I+FC+T  +  R   +  E  F  ++L G +SQ +R +AL + +  + R+  
Sbjct: 263 QNLGQYTGIIFCNTCINCRRGDLLAKELGFNSISLHGRMSQSQRLSALNLFKGKQKRLLF 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            T+V +RG+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++ ++ Q      +R+
Sbjct: 323 TTEVGSRGLDIPHVDFVINFDIPTSSKDYVHRVGRTARAGRSGRAISMVTQYDVETFQRI 382

Query: 360 FREANVSVVW 369
               N  +  
Sbjct: 383 EFALNKKLDE 392


>gi|262405028|ref|ZP_06081580.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
 gi|262348867|gb|EEY98008.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC586]
          Length = 436

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/391 (30%), Positives = 198/391 (50%), Gaps = 12/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                A + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRAETQPRAIIMAPTRELAIQIYNDAEPLLATTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRAFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLVEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQR 385
             A  +  ++P       P+  ++R    QR
Sbjct: 376 DHAIPTSDYDPSALLTDLPAPLSLRSSPQQR 406


>gi|145496370|ref|XP_001434176.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401299|emb|CAK66779.1| unnamed protein product [Paramecium tetraurelia]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 179/358 (50%), Gaps = 8/358 (2%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+    P+ + E + + G+   T +Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 71  FEDVYCFPKPLQELIVQAGFPGPTPIQAQSWSIGLTGHDLIGIAQTGSGKTLAFLLPAII 130

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+  + +    P  L +APTREL  Q+  +       +G+  A   GG     ++  
Sbjct: 131 HILAQLKQNAD---PQCLIMAPTRELTHQIYEQFTKFSVGSGLKAACLFGGQEKFIQKNQ 187

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+  +  +R
Sbjct: 188 LNQHPHILIACPGRLIDLVESGSTTLKGVTFLVLDEADRMLDMGFEPSIRKIVAQTRAER 247

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT    + +LA ++             +   +  I  + V+++   +++ +  I
Sbjct: 248 QTMLFSATWPKEVQSLALDFCTQQPIHIQIGSLDLTSNRQIQQKVVILSKEQKEDKLKEI 307

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G +  I+FC T+    +    L +   +  +L G+  Q ER   +   + G   V 
Sbjct: 308 LKSLGTRKIIIFCQTKIKCDQLQLYLIQDGLRCKSLHGDKRQSERDFVMNSFKKGDTTVL 367

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +ATDVA+RG+D+ D+E VI+ ++    E+ +HR GRTGRAG +G+S+ +       + 
Sbjct: 368 VATDVASRGLDIKDIEFVINFDMPKMIEDYVHRIGRTGRAGAQGVSISLFDSYEDAKL 425


>gi|87118190|ref|ZP_01074089.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
 gi|86165824|gb|EAQ67090.1| ATP-independent RNA helicase DbpA [Marinomonas sp. MED121]
          Length = 461

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/384 (32%), Positives = 198/384 (51%), Gaps = 13/384 (3%)

Query: 1   MKIFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           M  F +     +P  +   LS+ G+   T +Q   L   L + D+L  AQTGSGKT+AF 
Sbjct: 1   MANFSHNLDIQLPTKLTALLSDLGFETFTPIQAQTLPSILSDNDILAQAQTGSGKTLAFA 60

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSV 114
           + +   +               L + PTRELA QV +E+         +  +   GG+  
Sbjct: 61  IGMLMKINP------RYFGVQGLVMCPTRELADQVCKEIRKTARFLENIKVLSLCGGMPF 114

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GAHIVVGTPGRL +H+R   L +  L  +VLDEAD MLD+GF D I  +++
Sbjct: 115 GPQIGSLEHGAHIVVGTPGRLLEHVRKGTLRLDSLNTLVLDEADRMLDMGFVDSIRTLVE 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           S+PKKR+ LMFSAT    I  ++  +Q +   + + +      DI    V     D+  A
Sbjct: 175 STPKKRQTLMFSATYPETIGKISAEFQHNPKTIKVEATQESKPDIKQFFVKSNKDDKPYA 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++ +RY   + AIVFC+T+         L +H     A+ G+L Q++R   L    +  
Sbjct: 235 LMSAVRYQNPEQAIVFCNTKIECQTIADFLVDHKISAKAIHGDLEQRDRDQVLVQFSNAS 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ +ATDVAARGID+ +++ VI+ + + + +   HR GRTGRAG KG+++ ++      
Sbjct: 295 CRILVATDVAARGIDVKEVDTVINYDTTRDIDVHTHRIGRTGRAGNKGVAINLVTDKDTY 354

Query: 355 RAERLFREANVSVVWEPA-PSVEA 377
           + + +     +   +    P  +A
Sbjct: 355 KVKDIEDRFEIQADYLELDPKYDA 378



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
                    +      G K K     ++  L    G+ +  +G I V     +V ++   
Sbjct: 378 AEFRLIPNMTTICFDAGRKDKLRPGDIVGALTAGVGLAKDEVGKINVFDRRAYVAIANKQ 437

Query: 518 VDLLRRTV--KLDKGIQLKY 535
              +   +  K  KG  +K 
Sbjct: 438 AKYVVSELQTKKIKGRTIKV 457


>gi|323495931|ref|ZP_08100998.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
 gi|323319014|gb|EGA71958.1| ATP-dependent RNA helicase RhlB [Vibrio sinaloensis DSM 21326]
          Length = 433

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 191/378 (50%), Gaps = 6/378 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LHPQVIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++   L+ G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGIKAALAYGGEPYEKQLAKLEEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR---AERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++        E   
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPPIEEYI 375

Query: 361 REANVSVVWEPAPSVEAI 378
             A     ++P+  +E +
Sbjct: 376 EHAIPVSDYDPSALIEDL 393


>gi|270264230|ref|ZP_06192497.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
 gi|270041879|gb|EFA14976.1| putative ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
          Length = 429

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 195/387 (50%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSNP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I+VGT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVDQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+      S   + +  A + L  P
Sbjct: 376 GHSIPVSKYNSDALLTDLPAPKRLARP 402


>gi|269137456|ref|YP_003294156.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|267983116|gb|ACY82945.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda EIB202]
 gi|304557530|gb|ADM40194.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda FL6-60]
          Length = 424

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 11  LHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 70

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ R L+ G 
Sbjct: 71  AIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRVLEQGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 131 DILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTAQRLNM 190

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L    
Sbjct: 191 LFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEW 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 251 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 311 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGKSISLACEEYVLNLPAIESYI 370

Query: 364 NVSVV 368
             S+ 
Sbjct: 371 GHSIP 375


>gi|17985987|ref|NP_536783.1| belle [Drosophila melanogaster]
 gi|74947986|sp|Q9VHP0|DDX3_DROME RecName: Full=ATP-dependent RNA helicase bel; AltName: Full=Protein
           belle
 gi|7299061|gb|AAF54262.1| belle [Drosophila melanogaster]
          Length = 798

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 294 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 353

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 354 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 413

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 414 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 473

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 474 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 533

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 534 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 593

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 594 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 653

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 654 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 686


>gi|225682474|gb|EEH20758.1| ATP-dependent RNA helicase has1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 607

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/477 (24%), Positives = 217/477 (45%), Gaps = 16/477 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ +  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 134 NLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 192 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLAKGV 251

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 252 NLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTM 311

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   + + L+
Sbjct: 312 LFSATQTTKVEDLARISLRPGPLYINVDHRKEYSTVEGLEQGYVICDSDKRFLLLFSFLK 371

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 372 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLIC 431

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 432 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 491

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P+ + +  +   ++++    +L+    D  +      A H    +  
Sbjct: 492 -KEARVPVVEFDFPAKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFN 550

Query: 417 --AAGFLRIHRA-GLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
                 +++ ++ G   P  +   ++    RD+ +   R +         FK  + +
Sbjct: 551 VHKLDLVKVAKSFGFPTPPRVDITLAASMSRDKKQQGRRTYGSQPKHASKFKRRTEY 607


>gi|167625797|ref|YP_001676091.1| ATP-dependent RNA helicase RhlB [Shewanella halifaxensis HAW-EB4]
 gi|189040042|sp|B0TJ29|RHLB_SHEHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|167355819|gb|ABZ78432.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 436

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 200/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  + + +AL+E G+   T +Q   L   L +KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL+         + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG     +R+ 
Sbjct: 71  LLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGEGYEVQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P  +
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAK 190

Query: 181 R--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
               ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   ++++
Sbjct: 191 SRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKMPLLLSL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF +T+ S  +    L     +   L+G++ Q++R   L+    G   + 
Sbjct: 251 LEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        
Sbjct: 311 VATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +      S+ 
Sbjct: 371 IESYIQHSIP 380


>gi|300120116|emb|CBK19670.2| unnamed protein product [Blastocystis hominis]
          Length = 607

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 211/494 (42%), Gaps = 35/494 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   +++ GY     +Q   +   +  ++V+  A+TGSGKT+A+ L L   +L + 
Sbjct: 53  LTEKILHVINKLGYAKPFPIQSQAIPTVMSGREVIAVAKTGSGKTLAYLLPLFRHILDQP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +AP REL  Q+  E        G+ +    GG S+  +   L+ G+ 
Sbjct: 113 PVVE-GDGPIGLILAPARELVAQIYNEASKFCKVLGIRITAVYGGTSMTEQINSLKRGSE 171

Query: 127 IVVGTPGRLCDHIRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D +      +     +  VVLDEAD MLD+GF   I  IL ++   R+++
Sbjct: 172 IIVCTPGRMIDILCLNQGRLVGLRRVSYVVLDEADRMLDMGFEPQITTILQNARPDRQLV 231

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+   K  V + +       +++     +     +   ++ IL    
Sbjct: 232 MFSATFPTHVENLARKMLKKPVMIVVGGRTEVAAEVSQTIEVRTKEQKFPRLLQILGEWY 291

Query: 244 AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   +VF   +       + L    +    L G + QQ+R   +   ++    + IAT 
Sbjct: 292 DRGLILVFVDKQQKADYLFRDLLRSGYYSYILHGGMDQQDRDQTIVDFKNKVRTILIATS 351

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI + DL LVI+ +  ++ E+ +HR GRTGRAG KG ++  I       A  + + 
Sbjct: 352 VAGRGIHVNDLVLVINYDCPNHLEDYVHRVGRTGRAGNKGTAITFITPQEDMYASDMVKA 411

Query: 363 ANVSVVWEPAP------SVEA-IRERDAQRILQ----DPLFLDSIQGDEKKMV------- 404
              S    PA       + EA ++  +A+  L          D  +  EK+++       
Sbjct: 412 LKQSHTPVPAELQKLSDAFEAKVKAGNAKHRLSGYHTKGFKFDETEAGEKEVIKSMQKRQ 471

Query: 405 -----------DVLLAKHDPEKIAAGF-LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
                      +    + D + +   F +++      A  E + +  ++G++    D   
Sbjct: 472 VEIDNGIITPEEAQQQEMDEQSVRDKFNIKLATTTENAEGEESALGEMAGKEESDSDDDI 531

Query: 453 FKVGGGSRDNFKGS 466
           F        N  G+
Sbjct: 532 FGEERDDMLNEDGT 545


>gi|269138721|ref|YP_003295422.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|267984382|gb|ACY84211.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
 gi|304558724|gb|ADM41388.1| ATP-dependent RNA helicase DbpA [Edwardsiella tarda FL6-60]
          Length = 457

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P+     L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   + A            +L + PTRELA QV   L  L      +  + + G      
Sbjct: 61  LLQHIDANR------FITQSLVLCPTRELADQVATALRKLARYMPNIKVLTLCGGVPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  H++V TPGRL DH++ + +++  L+ ++LDEAD MLD+GF D ++ ++  +
Sbjct: 115 QRDSLIHAPHVIVATPGRLLDHLKKETVSLEALQTLILDEADRMLDMGFADALDEVISWA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR+ L+FSAT    I  +++  Q+D + +     + +   ++ R   V+   +   + 
Sbjct: 175 PEKRQTLLFSATWPAEIAAISRRIQRDPLTI-EIDTHGELPAVEQRFYEVSRGGKVGLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +   + +VFC+T+         L      V+AL G++ Q++R   L    +G +R
Sbjct: 234 TLLSQYQPASCVVFCNTKKDCQAVYDALEGSEQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L       + W+P PS
Sbjct: 354 NALEEMLGARLQWQPLPS 371



 Score = 64.6 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 49/146 (33%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +      R   +   
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLGARLQWQPLP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G++   IG I + P   +V V 
Sbjct: 371 SGVRIVALEAAMATLCIDGGKKTKMRPGDILGALTGELGLDGADIGKIDIHPTHAYVAVR 430

Query: 515 ADGV----DLLRRTVKLDKGIQLKYL 536
                     L++     K ++++ L
Sbjct: 431 RAVARQAWKQLQQGKIKGKAVKVRLL 456


>gi|217073124|gb|ACJ84921.1| unknown [Medicago truncatula]
          Length = 413

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 191/371 (51%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRDIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL +APTR+LA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 106 -----VTECQALVLAPTRKLAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     + + + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            ++VF +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVVFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLSDIQKFYNV 400

Query: 366 SVVWEPAPSVE 376
            +   P+   E
Sbjct: 401 LIEELPSNVAE 411


>gi|169409547|gb|ACA57893.1| DEAD box polypeptide 43 (predicted) [Callicebus moloch]
          Length = 680

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 6/383 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L  +   
Sbjct: 249 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTV 308

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ G  I+
Sbjct: 309 KGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRKGVDII 367

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D      +N+ ++  +VLDEAD+MLD+GF   I  IL      R+ +M SAT
Sbjct: 368 IATPGRLNDLQMNNFVNLRNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSAT 427

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KN 246
                        ++  +      +    S ++   ++    ++   I   L+   +   
Sbjct: 428 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVEQNIIVTTEEEKWIHIQTFLQSMSSTDK 487

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IATD+A+R
Sbjct: 488 VIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLASR 547

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREA 363
           G+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A  L    + A
Sbjct: 548 GLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQRA 607

Query: 364 NVSVVWEPAPSVEAIRERDAQRI 386
           N + + +P P    +    A  I
Sbjct: 608 NQASMCKPRPRKSEVLSASANHI 630


>gi|260775114|ref|ZP_05884013.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609031|gb|EEX35191.1| ATP-dependent RNA helicase RhlB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 433

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LHPQVVEGLKKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A+TG+  A+  GG S  ++   L+ G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIYNDAEPLVAETGIKAALAYGGESYDKQLAKLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   + + +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMSLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PERAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILEQFTKGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPPIEEYI 375

Query: 364 NVSVV---WEPAPSVEAI 378
             ++    ++P+  +E +
Sbjct: 376 EHTIPVSDYDPSALIEDL 393


>gi|156087226|ref|XP_001611020.1| eukaryotic initiation factor 4A-3 (eIF4A-3)  [Babesia bovis T2Bo]
 gi|154798273|gb|EDO07452.1| eukaryotic initiation factor 4A-3 (eIF4A-3) , putative [Babesia
           bovis]
          Length = 395

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 197/379 (51%), Gaps = 9/379 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE +   + I + +   G+   ++VQ+  + P L  +DV++ +Q+G+GKT  F L  
Sbjct: 21  VDSFEGLGLREEILKGIFSYGFDKPSAVQQRAIKPILDGRDVIIQSQSGTGKTCVFCLGA 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   + +         L ++PTRELA Q  +    L     V V  CIGG  V  + 
Sbjct: 81  LQIVNPASKQ------TQVLLLSPTRELAEQSQKVCLALGDYCNVEVHCCIGGKRVSDDI 134

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G HIV GTPGR+   I  + LN  ++K ++LDEADEML+ GF+D +  I    P 
Sbjct: 135 KALESGVHIVSGTPGRVNHMIAERHLNTRNIKQMILDEADEMLNRGFKDQVYSIYRYLPP 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  + + +  +  RV +  +      I    V +     + + + +
Sbjct: 195 TLQVILVSATLPQEVVEITEKFMNNPFRVLVKRDELTLDGIKQFFVAVEKEQWKFDTLCD 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A+VFC+TR  V    K + +  F V  + GE+SQ+ER++ +Q  R G +RV
Sbjct: 255 LYESLIITQAVVFCNTREKVDWLAKRMQDSNFTVCKMHGEMSQKERNDIMQRFRRGESRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+TD+  RG+D+  + LV++ +L ++ EN +HR GR+GR GRKG+++  +  +  R   
Sbjct: 315 LISTDIWGRGLDVQQVSLVVNYDLPNSRENYIHRIGRSGRYGRKGVAINFVKDDDIRILR 374

Query: 358 RLFREANVSVVWEPAPSVE 376
            + +  +  +   P    E
Sbjct: 375 DIEQYYSTQIDEMPMNIAE 393


>gi|157127270|ref|XP_001654897.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|157127276|ref|XP_001654900.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872965|gb|EAT37190.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108872968|gb|EAT37193.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 594

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 184/380 (48%), Gaps = 11/380 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ I  P  +   + ++G+   T +Q       L   +++  A+TGSGKT+ + L  
Sbjct: 117 ITEFDEIDMPDYVLNEIEKQGFQRPTPIQAQGWPIALSGLNMVGVAKTGSGKTLGYMLPA 176

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +    S    PL L +APTRELA Q+ +      + + +      GG S   + 
Sbjct: 177 IVHINHQKPDPS-VRGPLVLVLAPTRELAQQIQQVATDFGSSSYIRNTCLFGGSSKGPQA 235

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  IV+ TPGRL D +      +  +  +VLDEAD MLD+GF   I  IL+    
Sbjct: 236 SDLRRGVEIVIATPGRLIDFLETGTTTLQRVTYLVLDEADRMLDMGFEPQIRKILEQVRP 295

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R++LM+SAT    +  LA+++  D V++N+ S     +    + V V      N  +  
Sbjct: 296 DRQILMWSATWPKEVQRLARDFLGDYVQINVGSLELSANHNITQYVKVIEEHEKNEQLGK 355

Query: 237 ---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
              N+     A   ++F +T+    + T  L  +    V + G+ SQQER  AL   R+ 
Sbjct: 356 LLDNLSARGPAGKILIFSTTKRKCDQITSYLRRYGQDAVGMHGDKSQQERERALNRFRNS 415

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            + + +ATDVAARG+D+  +++VI+ +     E+ +HR GRTGR+   G +      N +
Sbjct: 416 NSCILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGEAYTFFTSNER 475

Query: 354 RRAERL---FREANVSVVWE 370
           + A+ L     EA   V  E
Sbjct: 476 KMAKELVAILEEAKQDVPPE 495


>gi|13470594|ref|NP_102163.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
 gi|14021336|dbj|BAB47949.1| ATP-dependent RNA helicase [Mesorhizobium loti MAFF303099]
          Length = 467

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 118/358 (32%), Positives = 188/358 (52%), Gaps = 1/358 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A    G+     +Q   + P L  +D+   AQTGSGKT AF L + S ++A   +  
Sbjct: 21  LLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTK-R 79

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ 
Sbjct: 80  RAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIA 139

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +R   L +S  K +VLDE D MLD+GF +D++ I  ++   R+  +FSAT+ 
Sbjct: 140 TPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMP 199

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   K+ VR+ ++ ++   ++I    V      +   +  +L     K+ I+F
Sbjct: 200 DEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADEAMKSVIIF 259

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R TK L    F+   + G  SQ  R  AL   R+G  R+ +ATD+AARGID+
Sbjct: 260 SRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFREGSVRILVATDIAARGIDV 319

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           P +  V++ +L    E+ +HR GRTGR G  G+++ +   +   +  ++ R     + 
Sbjct: 320 PGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIRTKLP 377


>gi|16272830|ref|NP_439053.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae Rd KW20]
 gi|260579983|ref|ZP_05847813.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
 gi|1573911|gb|AAC22552.1| ATP-dependent RNA helicase (rhlB) [Haemophilus influenzae Rd KW20]
 gi|260093267|gb|EEW77200.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae RdAW]
          Length = 418

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 373

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 374 EEYIGHSIP---------VSQYETEALLELP 395


>gi|312374635|gb|EFR22148.1| hypothetical protein AND_15703 [Anopheles darlingi]
          Length = 715

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 186/372 (50%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F N P  + E L ++G+   + +Q       L  +D++  AQTG+GKT+AF L     + 
Sbjct: 295 FGNYPD-LMEELRKQGFTKPSPIQSQGWPVLLLGEDMIGIAQTGTGKTLAFLLPAFIHIE 353

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            ++   S    P  L +APTRELA+Q+ +E+   Y    +      GG     +   +++
Sbjct: 354 GQSTPRSERGGPNVLVLAPTRELALQIEKEVSK-YQFRDIKAVCLYGGGDRRAQMNVVRS 412

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D ++   +N+S +  +VLDEAD MLD+GF   I  +L      R+ +
Sbjct: 413 GVEIIIATPGRLNDLVQEGVVNVSSITYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTV 472

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y  D ++V + + +      +      +   D+ + I+  ++  
Sbjct: 473 MTSATWPDGVRRLAQSYMHDPIQVYVGTLDLAAVHTVTQHIECLDEEDKYHRIMKFVKQM 532

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  I+FC  +      +     +     ++ G   Q +R  AL+ ++ G  R+ IAT
Sbjct: 533 EPKDKVIIFCGKKTRADDLSSEFVLNDIGCQSIHGNREQADREQALEDIKKGTVRILIAT 592

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
           DVA+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G S+  + ++         +
Sbjct: 593 DVASRGLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGTSLSFVTRSDWAVAAELIK 652

Query: 359 LFREANVSVVWE 370
           +  EA   V  E
Sbjct: 653 ILEEAQQEVPDE 664


>gi|217974178|ref|YP_002358929.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499313|gb|ACK47506.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE+        P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APQHQTMLFSATYSDAVKQLAEKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  +  + R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 AEIEALIEQKLPVSVQPGYEE 379


>gi|152999859|ref|YP_001365540.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364477|gb|ABS07477.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE+        P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APQHQTMLFSATYSDAVKQLAEKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  +  + R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 AEIEALIEQKLPVSVQPGYEE 379


>gi|160874482|ref|YP_001553798.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|304409447|ref|ZP_07391067.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303805|ref|ZP_07583558.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|160860004|gb|ABX48538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|304351965|gb|EFM16363.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912703|gb|EFN43126.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|315266720|gb|ADT93573.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE+        P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APQHQTMLFSATYSDAVKQLAEKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  +  + R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIHALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 AEIEALIEQKLPVSVQPGYEE 379


>gi|32363501|sp|P44922|RHLB_HAEIN RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 415

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQAI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     +   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|148272372|ref|YP_001221933.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830302|emb|CAN01236.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 509

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 11/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + + +AL++ G +    +QE  +   L  +D++  A+TG+GKT  FGL L 
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       +P     AL + PTRELAVQV  +L+         V    GG +   +  
Sbjct: 61  QRL-----GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIE 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA IVVGTPGRL D +  + L++ +++ +VLDEAD+MLDLGF  DIE +   +P  
Sbjct: 116 QLKAGAQIVVGTPGRLLDLVGQRLLSLQNVREMVLDEADKMLDLGFLSDIEKLFAQTPAV 175

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R  ++FSAT+   I         +   +R     E    ++I +        D+D  I  
Sbjct: 176 RHTMLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGR 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++F  T+ + +R  + L +  F   A+ G+L+Q++R  A+   + G+  +
Sbjct: 236 ILQAEGRGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDI 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+  +  + +  LHR GRTGRAG+ G++V  +  +   +  
Sbjct: 296 LIATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWA 355

Query: 358 RLFREANVSVVWEPAPS 374
            + R        +P P+
Sbjct: 356 LINRALEFG---QPEPT 369


>gi|116327340|ref|YP_797060.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332045|ref|YP_801763.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120084|gb|ABJ78127.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125734|gb|ABJ77005.1| Superfamily II DNA and RNA helicase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 549

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 204/375 (54%), Gaps = 8/375 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++   +  A+ E GY  LT +QE  +   L  KD++  AQTG+GKTVAF + + 
Sbjct: 1   MKFEELSLHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDIIGLAQTGTGKTVAFLIPVV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
            T+L +N          AL +APTREL +Q+  E + L   +  + AV  IGG     + 
Sbjct: 61  HTILTKN-----IQKVSALVLAPTRELTIQIADEAKKLLKHSDGIRAVPIIGGTDYKSQN 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+    I+V TPGRL D ++   ++IS+++  VLDEAD MLD+GF  DI ++L     
Sbjct: 116 KDLEGLNGIIVATPGRLIDMVKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCKN 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+S  +  LA  +  + V + I  E      ID + V +   ++   + N+
Sbjct: 176 RKQTLLFSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTNL 235

Query: 239 LRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +     +   I+F + +A++ +    L ++   +  +S EL Q++R   L+  + G+ R 
Sbjct: 236 IVNSKDEGQGIIFTNYKANIPKIVYTLRKYGIPITGISSELDQKKRLRLLRDFKSGKYRY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RGID+ ++++V + +L  + EN +HR GRT RAGR G ++    ++     E
Sbjct: 296 MVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRMGKAIGFCSESDYVELE 355

Query: 358 RLFREANVSVVWEPA 372
           ++ +     +     
Sbjct: 356 KIEKYLKQKIEILEV 370


>gi|126173575|ref|YP_001049724.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996780|gb|ABN60855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 472

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 6/381 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE+        P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAESLTSDSNDKPILRALVMTPTRELAIQVCENIQKYSQFLPLKTLAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APQHQTMLFSATYSDAVKQLAEKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  +  + R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEEFKASKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +VI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIQALPMVINLELPFLAEDYIHRIGRTGRAGLTGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
             +       +     P  E 
Sbjct: 359 AEIEALIEQKLPVSVQPGYEE 379


>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 369

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/368 (28%), Positives = 187/368 (50%), Gaps = 7/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   G+   +++Q+  + P +  +DV+  +Q+G+GKT  F ++    L   
Sbjct: 2   NLKPTLLRGIYAYGFEKPSAIQQRAIRPIVCGRDVIAQSQSGTGKTAVFSISSLQLLD-- 59

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 ++ P  L ++PTRELA Q  R +  L     V    CIGG S+  +R+ LQ G 
Sbjct: 60  ----ERSNDPQVLILSPTRELAEQTQRVVSSLGDFMNVKCHACIGGKSLGEDRKVLQQGV 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++ GTPGR+ D I+   L    LKA ++DEADEML+ GF++ I  I    P + ++++ 
Sbjct: 116 QVLSGTPGRVYDLIKRGDLTTRALKAFIIDEADEMLNKGFKEQIYDIYRYLPPQTQVVLV 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGA 244
           SAT+   +  + + +  D +R+ +  +      I      +     + + + ++      
Sbjct: 176 SATLPVEVLEMTRKFMNDPIRILVKRDELTLEGIKQFFVSVEKEEWKFDTLCDLYDTLTV 235

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V      + E  F V A+ G+++Q ER   ++  R G +RV IATD+ 
Sbjct: 236 TQAVIFCNTKQKVDWLATKMRESNFTVAAMHGDMTQDERDKVMEDFRSGSSRVLIATDLW 295

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+  + LVI  +L +N E  +HR GR+GR GRKG+++  +     R    + +  +
Sbjct: 296 GRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGVAINFVRTEDVRTLRDIEQFYS 355

Query: 365 VSVVWEPA 372
             +   P 
Sbjct: 356 TQIDEMPL 363


>gi|50425797|ref|XP_461495.1| DEHA2F26598p [Debaryomyces hansenii CBS767]
 gi|49657164|emb|CAG89921.1| DEHA2F26598p [Debaryomyces hansenii]
          Length = 474

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 104/430 (24%), Positives = 189/430 (43%), Gaps = 8/430 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E G+   + VQE  +   L  +D+L  A+ G+GKT +F +        + ++     
Sbjct: 2   GIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKI---- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              AL + PTRELA+Q  + +  L    G+   V  GG S+  +   L +  H++VGTPG
Sbjct: 58  --QALILVPTRELALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D    K  ++S     V+DEAD+ML   F+  IE IL   P  R+ L+FSAT   A+
Sbjct: 116 RVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            +    +      +N+  E             V    + + +  +        AI+FC++
Sbjct: 176 KSFMDQHLTKPYEINLMDELTLRGI-SQFYAFVEEKQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +       ++ Q  R+      R G+ RV + +D+  RGID+  +
Sbjct: 235 TNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ +     E  LHR GR+GR G  G+++ ++  N +    ++ +E    +   PA 
Sbjct: 295 NVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLMSWNDRYNLYKIEQELGTEIKPIPAT 354

Query: 374 SVEAIRERDAQRILQDPLFLDSI-QGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
             +++   + +  +  P  +D + +G+E              ++++    + +     P 
Sbjct: 355 IDKSLYVAENEAAVPRPFKIDQLPKGNETVHKKSGYEYKGQPEVSSNVAGMPQQVPNGPV 414

Query: 433 EITPVSLVSG 442
               V+   G
Sbjct: 415 PPQQVNPSQG 424


>gi|254506632|ref|ZP_05118773.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219550505|gb|EED27489.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 458

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 138/402 (34%), Positives = 216/402 (53%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L   
Sbjct: 9   NLRPELTETLDSLGYTEMTPIQQQALPLVLAGKDVIGQGKTGSGKTATFSLGLLSNLNVS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++  L  +VLDEAD MLD+GF + I+ I++++P KR+ L+
Sbjct: 123 AHILVGTPGRILDHMSKGRISLKELNTLVLDEADRMLDMGFEEAIDTIIEAAPSKRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I +L++        V + S +++ +       L +  +RD+A+  +L  H  
Sbjct: 183 FSATFPDNIESLSEKVMVAPEMVKVESTHQKSTIEQRFFKLNSTEERDDALEALLLTHKP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++++VFC+T+  V   T  L+   F VV L G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESSVVFCNTKKEVQNVTDELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    +
Sbjct: 303 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYMD 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           ++V     P      E+  +R     +    I G +K+ V  
Sbjct: 363 IAVSPSELP------EKLIERPFYPKMQTIQILGGKKQKVRA 398



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G KQK  A  ++  L + +G++ + IG I + P +++V V  D V    
Sbjct: 380 YPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKIGKINILPMVSYVAVEHDIVKPAL 439

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 440 KQLQTGK 446


>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
 gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
          Length = 447

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 193/372 (51%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ + GY   T VQE  +   +   D+LVS+ TGSGKT AF L     L+   
Sbjct: 8   LAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSLHRLV--G 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
            R +P S P  L + PTRELA QV   ++           A  +GG     + + L    
Sbjct: 66  RRPAPNSGPRVLVLTPTRELAQQVEEAVKTYGRALRWLNTACLVGGAPFFAQVKQLSRPV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL DH+  + L +S ++ +VLDEAD MLD+GF +DIE I+ + P  R+ L+F
Sbjct: 126 DVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRMLDMGFAEDIEAIVGAIPASRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGA 244
           SAT+   +  LA    ++  R+ IAS   +  +I+ R +    +  +   +  +L   G 
Sbjct: 186 SATLDGVVGALANKLTRNPQRIEIASTEAKRGNIEQRLMFADDMGHKSRLLEALLGTDGL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VF +T+ S    +  L E  F   AL G++ Q  R+  LQ +R GR  V +ATDVA
Sbjct: 246 QQAVVFTATKKSADELSLSLQEKGFSAAALHGDMHQTVRNRTLQRLRQGRIGVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+ +     E+ +HR GRTGRAGR G+++ +           + R   
Sbjct: 306 ARGIDVAGISHVINFDPPRQVEDYVHRIGRTGRAGRDGIAITLSGPRETGLIRAIERFTG 365

Query: 365 VSVVWEPAPSVE 376
             +     P +E
Sbjct: 366 DRLAVHTIPGLE 377


>gi|157119649|ref|XP_001653435.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108875244|gb|EAT39469.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 911

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 12/376 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE  N P  +   +++ G+ N T++Q       L  +D++  AQTGSGKT+A+ L   
Sbjct: 229 QDFEEGNFPDFVMNEINKMGFPNPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPGI 288

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRE 117
             +  +         P+ L +APTRELA Q+   +      +          GG     +
Sbjct: 289 VHIAHQKP-LQRGEGPVVLVLAPTRELAQQIQTVVRDFGTHSKPLIRYTCIFGGALKGPQ 347

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL+ G  +V+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++   
Sbjct: 348 VRDLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 407

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA----LSDRDN 233
             R++LM+SAT    +  LA+++  D +++NI S N   +   ++ V V        +  
Sbjct: 408 PDRQVLMWSATWPKEVQALAEDFLHDYIQINIGSLNLSANHNIHQIVDVCEEGEKEGKLL 467

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +++  +        I+F  T+  V    K +    +   ++ G+ SQ ER   LQ  R G
Sbjct: 468 SLLKEISSDVNSKIIIFVETKKKVEDLLKNIVRDGYGATSIHGDKSQSERDYVLQDFRHG 527

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           ++ + +ATDVAARG+D+ D++ VI+ +  ++ E+ +HR GRTGR    G +         
Sbjct: 528 KSTILVATDVAARGLDVEDVKYVINFDYPNSSEDYIHRIGRTGRCSSYGTAYTFFTPGNG 587

Query: 354 RRAERL---FREANVS 366
           R+A  L     EA   
Sbjct: 588 RQARELLSVLEEAGQQ 603


>gi|307105760|gb|EFN54008.1| hypothetical protein CHLNCDRAFT_31911 [Chlorella variabilis]
          Length = 556

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/415 (28%), Positives = 187/415 (45%), Gaps = 47/415 (11%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE+  +P  + E +    Y   T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 31  ISSFEDVDLPPALMENVKRCKYNKPTPVQRYSIPIGLAGRDMMACAQTGSGKTAAFCFPI 90

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +L       R S  + PLAL ++PTREL+ Q+  E      +TGV   V  GG    
Sbjct: 91  IGNILRSGYTPLRGSRKAFPLALVLSPTRELSTQIYDESRKFTYQTGVRPVVVYGGAPQQ 150

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--- 172
           ++ R+L+ G   +V TPGRL D +    +++  ++ + LDEAD MLD+GF   I      
Sbjct: 151 QQLRELERGCDFLVATPGRLIDIMDRARVSLGKVRFLALDEADRMLDMGFEPQIRRRGPL 210

Query: 173 ------------------------------------LDSSPKKRRMLMFSATISPAITTL 196
                                                   P +R+ L+FSAT    I  L
Sbjct: 211 PGLPRLSPSPAAAPEAWPCRRGLPRPRRNPPIVDEEDMPRPGERQTLLFSATFPKEIQRL 270

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A ++  + + + +         I      V + D+   ++++L+       ++F  T+  
Sbjct: 271 AADFLHNYIFLTVGRVGSSTDLIVQVIEYVPIQDKRQMVLDLLQTLEKGLTLIFVETKKG 330

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L  +     ++ G+ SQ ER  AL+  R GR  V +ATDVAARG+D+P +  V
Sbjct: 331 ADALEDFLCRNGLPATSIHGDRSQAEREAALRSFRTGRTPVLVATDVAARGLDIPHVTHV 390

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVV 368
           I+ +L S+ ++ +HR GRTGRAG+KG++     +       +   +  E N  V 
Sbjct: 391 INFDLPSDIDDYVHRIGRTGRAGKKGLATAFFSEKDTGISSKLVEILSETNQEVP 445


>gi|242093508|ref|XP_002437244.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
 gi|241915467|gb|EER88611.1| hypothetical protein SORBIDRAFT_10g023440 [Sorghum bicolor]
          Length = 567

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/398 (30%), Positives = 197/398 (49%), Gaps = 32/398 (8%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   ++  GY N T VQ   +   +  +D++  AQTGSGKT AF L + S 
Sbjct: 58  FEAAGLAEAVLRNVARCGYDNPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 117

Query: 62  LL--------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
           L+               +   F   + P AL +APTRELA Q+  E      +TG+ V V
Sbjct: 118 LVVPPAGGGSGYGYGRRDRGSFDRVAKPRALVLAPTRELAAQINEEARKFSFQTGLRVVV 177

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  ++ + RDL+ G  ++V TPGRL D +    +++  +K +V+DEAD MLD+GF  
Sbjct: 178 AYGGTPMYNQLRDLERGVDLLVATPGRLVDMVERSRISLEGIKYLVMDEADRMLDMGFEP 237

Query: 168 DIEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I+D         R+ ++FSAT  P I  LA ++  + + V +         I+ + 
Sbjct: 238 QIRKIVDMMNMPKKSVRQTMLFSATFPPEIQRLASDFLYNYIFVTVGRVGSSTDLIEQKL 297

Query: 224 VLVALSDRDNAIVNILRYH---------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             V   ++   ++++L+                +VF  T+         L    F   A+
Sbjct: 298 EFVNDGEKRGFLIDLLQKQSAGVANSKLQQPLTLVFVETKREADSLRYFLQSKGFPATAI 357

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ +QQER +AL+  + G   + +ATDVA+RG+D+P++  VI+ +L  + E+ +HR GR
Sbjct: 358 HGDRTQQERESALKSFKSGTTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGR 417

Query: 335 TGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSVVW 369
           TGRAG+ G++     ++    A+    L  EA   V  
Sbjct: 418 TGRAGKAGIATAFFTESNHPLAKGLLELMTEAKRDVPE 455


>gi|15230730|ref|NP_187299.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75313790|sp|Q9SQV1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40
 gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana]
 gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana]
          Length = 1088

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 188/383 (49%), Gaps = 7/383 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  +P  I   L   G+ + T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF- 494

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L  + R    + P  L +APTRELA Q+  E       + +      GG     + ++
Sbjct: 495 -ILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKE 553

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R
Sbjct: 554 LERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 613

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +   + V+VNI   +    +  I     +V   +++  +  I
Sbjct: 614 QTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQI 673

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F  V + G+ +Q ER   L   R G++ V 
Sbjct: 674 LRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKTQGERDWVLNQFRSGKSCVL 733

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++     +   + A  
Sbjct: 734 IATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPD 793

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L +    +    P P V  I  R
Sbjct: 794 LIKVLEGANQQVP-PQVRDIAMR 815


>gi|157138136|ref|XP_001664143.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869558|gb|EAT33783.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 495

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 203/395 (51%), Gaps = 9/395 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + EA     +   + +Q   +   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 66  DTLCEACRALKWKAPSKIQREAIPLALQGKDVIGLAETGSGKTGAFALPILQALLENPQR 125

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       A+ + PTRELA Q+  + E L A  G+   V +GG+ +  +   L    HI+
Sbjct: 126 Y------FAVILTPTRELAYQISEQFEALGASIGIKCCVIVGGMDMVSQALHLARKPHII 179

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  +K +V+DEAD +L+L F  ++E IL   P++RR  +FSA
Sbjct: 180 IATPGRLVDHLENTKGFNLKAVKYLVMDEADRILNLDFEVELEKILKVIPRERRTFLFSA 239

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   KD V+V ++S+ +    +    + +    +D  +V+IL      + 
Sbjct: 240 TMTKKVKKLERASLKDPVKVEVSSKYQTVEKLLQYYIFIPAKYKDVYLVHILNELAGNSF 299

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L       V L G++SQ +R  AL   +    ++ I+TDVA+RG
Sbjct: 300 MIFCSTCNNTVRTALMLRALGLAAVPLHGQMSQNKRLAALNKFKGKNRQILISTDVASRG 359

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++V++ ++ ++ ++ +HR GRT RAGR G +V  + Q      +R+       +
Sbjct: 360 LDIPHVDVVLNFDIPTHSKDYIHRVGRTARAGRAGKAVTFVTQYDVELYQRIEHLLGKKL 419

Query: 368 VWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                    V A++ER  +      L L  I   +
Sbjct: 420 PQFKCEEDEVMALQERVGEAQRTARLELKDIDDRK 454


>gi|238798166|ref|ZP_04641653.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
 gi|238718020|gb|EEQ09849.1| ATP-independent RNA helicase dbpA [Yersinia mollaretii ATCC 43969]
          Length = 460

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLIHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I  ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAINDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPVGIEQISARV-QREPVNVEVEDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 364 KVKWTPAEQV----SRSANTLLEPEMVTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|332308441|ref|YP_004436292.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175770|gb|AEE25024.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 421

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/348 (32%), Positives = 185/348 (53%), Gaps = 6/348 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  + + +ALS   + + T +Q   L P L   D+   AQTG+GKT+AF +A    
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL+          P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R  L
Sbjct: 71  LLSNPQPTK--KQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++GT GR+ D+ +    +++ ++  VLDEAD M DLGF  DI ++ +  P    
Sbjct: 129 EEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPNPSE 188

Query: 182 M--LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              ++FSAT+S  +  LA  +  +   V +  E +  + I       +  D+   +++++
Sbjct: 189 RLSMLFSATLSYRVQELAYEHMNNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSLM 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+ S  + +  L     +V  LSG++ Q +R   L+    G+  + +
Sbjct: 249 EEEWPDKAIVFANTKHSCEKVSDWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+  
Sbjct: 309 ATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356


>gi|302821639|ref|XP_002992481.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
 gi|300139683|gb|EFJ06419.1| hypothetical protein SELMODRAFT_30997 [Selaginella moellendorffii]
          Length = 641

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 145/559 (25%), Positives = 254/559 (45%), Gaps = 41/559 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I   L++RG  +L  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +    
Sbjct: 28  VSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRSR 87

Query: 67  DRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +    S   P AL +APTRELA QV  E      +   V     GGVS+  ++R L  G
Sbjct: 88  SKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVC--VYGGVSIMSQKRLLSRG 145

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + VGTPGR+ D +    L++S ++ +VLDEAD+ML +GF +D+E I++  P+KR+ ++
Sbjct: 146 VDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNML 205

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ +    + ++    + E        Y       + R      I  Y
Sbjct: 206 FSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITVY 265

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      +  +   L    AL G+++Q +R   L   R+GR  + +AT
Sbjct: 266 GKGGKTIVFTQTKRDAEEVSMAMNRTLGC-EALHGDIAQFQREKTLAAFREGRFLILVAT 324

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ D++L+IH +L  + E  +HRSGRTGRAG+ G ++       +R  +   R
Sbjct: 325 DVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRILKHFER 384

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAG 419
           +   S  ++  P  + +    + + ++    +  +  D K++      K   E    A  
Sbjct: 385 QVGCSFQFKSMPHFDEVLAASSSQAVE---LIKGVHPDLKQVFMATAEKLLEEHGTAAFA 441

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
               H +G   P E   +  +         SRA                F L+V      
Sbjct: 442 AAIAHMSGFSQPPEQRSLISLEAGYMTLKFSRAPGN-------------FPLAV------ 482

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGV-DLLRRTVKLDKGIQLK 534
             R ++  +   S     +IG +++  +        ++      DLL +++    G +++
Sbjct: 483 --RHVVGAIASLSEKAADNIGKVQMIDEKNVEGAVFDLPEHIATDLLSKSM--PSGTRIE 538

Query: 535 YLGGEKPDFRGYKSSGFKS 553
            +         +   G +S
Sbjct: 539 AIKELPSLQDSWDDGGRRS 557


>gi|313233924|emb|CBY10092.1| unnamed protein product [Oikopleura dioica]
          Length = 611

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 185/390 (47%), Gaps = 21/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    +  +I EA+    Y   T VQ+  +    + +D++  AQTGSGKT AF L +
Sbjct: 139 VNTFAECELGDIINEAIKLANYTVPTPVQKNAIPIINKGRDLMSCAQTGSGKTAAFLLPM 198

Query: 59  ASTLLAEND-----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            S++                R      PLAL ++PTRELA Q+  E      ++ V   V
Sbjct: 199 LSSIFHSGPGESANQNSSGYRGRRKIYPLALVLSPTRELASQIYEESRKFAYRSQVRPCV 258

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  V  + RDL  G H++V TPGRL D +    + + + + + LDEAD MLD+GF  
Sbjct: 259 IYGGADVGAQMRDLDRGCHLLVATPGRLADFLDRGKIGLDYCRYLCLDEADRMLDMGFEP 318

Query: 168 DIEFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I++      +      MFSAT    I  LA+++  + + + +        +I  + 
Sbjct: 319 QIRRIVEKDAMPPKGDRQTLMFSATFPKEIQHLARDFLDNYIFLTVGRVGSTSQNITQKV 378

Query: 224 VLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
           V V  +D+ N + ++          +VF  T+         L +  F+   + G+ +Q+E
Sbjct: 379 VWVDENDKINFLTDLLTATDQNTCFVVFTETKKGADYLDNYLYDRGFRSTCIHGDRNQRE 438

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+  R+    V +AT VAARG+D+P++  VI+ +L S+ +  +HR GRTGR G  G
Sbjct: 439 REGALKSFREAVTPVLVATAVAARGLDIPNVRHVINFDLPSDIDEYVHRIGRTGRVGNIG 498

Query: 343 MSVFVIPQ---NMQRRAERLFREANVSVVW 369
           ++         N+ R    L  EA   V  
Sbjct: 499 LATSFFNDKNSNIVRDLLELLIEAKQEVPE 528


>gi|496902|emb|CAA56074.1| translation initiation factor [Homo sapiens]
          Length = 411

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+G+ GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|67623565|ref|XP_668065.1| ATP-dependent RNA helicase [Cryptosporidium hominis TU502]
 gi|54659251|gb|EAL37837.1| ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 361

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/359 (27%), Positives = 167/359 (46%), Gaps = 7/359 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E+G+   + +QE  +   L  KD+L  A+ G+GKT AF + L   +  + +      
Sbjct: 2   GIYEKGFERPSPIQEESIPVALAGKDILARAKNGTGKTAAFVIPLLEKINTKKNII---- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA+Q    ++ L     V   V  GG S+  +   L N  H++VGTPG
Sbjct: 58  --QGLILVPTRELALQTSSIVKQLGKHINVQCMVSTGGTSLRDDILRLNNPVHVLVGTPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D    K  N+S     ++DEAD++L   F+  IE +++  PK+R++L++SAT    +
Sbjct: 116 RILDLSNKKVCNLSGCFMFIMDEADKLLSPEFQPIIEELIEFLPKERQILLYSATFPVTV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                 Y  +A  +N+  E             V    + + +  +        AI+FC++
Sbjct: 176 KGFKDKYLANAHEINLMDELTLKGV-TQYYAFVEEKQKLHCLNTLFSKLQINQAIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E       +   + Q  R+      R+G  R  +++D+  RGID+  +
Sbjct: 235 VTRVELLAKKITELGSSCFYIHARMLQSHRNRVFHDFRNGACRCLVSSDLITRGIDIQSV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
            +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+ +E    +   PA
Sbjct: 295 NVVINFDFPKYSETYLHRIGRSGRFGHLGLAINLITYEDRYNLYRIEKELATEISPIPA 353


>gi|260459532|ref|ZP_05807787.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259035086|gb|EEW36342.1| DEAD/DEAH box helicase domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 477

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 119/358 (33%), Positives = 188/358 (52%), Gaps = 1/358 (0%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A    G+     +Q   + P L  +D+   AQTGSGKT AF L + S ++A   +  
Sbjct: 31  LLKATHNAGFTEPKPIQMQAIPPQLEGRDIFGIAQTGSGKTAAFALPILSKIIALGTK-R 89

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL +APTRELAVQ+   ++ L     V  A+ +GGVS   + + +  G  I++ 
Sbjct: 90  RAKTTRALILAPTRELAVQIEDTIKILAKGAHVSTALVLGGVSRFSQVKKVAPGVDILIA 149

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +R   L +S  K +VLDE D MLD+GF +D++ I  ++   R+  +FSAT+ 
Sbjct: 150 TPGRLTDLVREGDLILSDTKWLVLDEGDRMLDMGFINDVKRIAKATAPDRQTALFSATMP 209

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  LAK   K+ VR+ ++ ++   ++I    V      +   +  +L     K+ I+F
Sbjct: 210 DEIAELAKGLLKNPVRIEVSPQSTAAAEIVQGVVFARTKQKRQVLSTMLADAAMKSVIIF 269

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R TK L    F+   + G  SQ  R  AL   RDG  R+ +ATD+AARGID+
Sbjct: 270 SRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQKALNDFRDGSVRILVATDIAARGIDV 329

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           P +  V++ +L    E+ +HR GRTGR G  G+++ +   +   +  ++ R     + 
Sbjct: 330 PGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAITLCDPSENSKLRQVERIIRTKLP 387


>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Porphyra
           yezoensis]
          Length = 408

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 185/364 (50%), Gaps = 10/364 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N+ + +   +   G+   +++Q+  + P ++ +D +  AQ+G GKT  F + + 
Sbjct: 51  ETFDDMNLREELLRGIYAYGFEKPSAIQQRAIMPLIQNRDTIAQAQSGMGKTATFSIGVL 110

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +      AL +APTRELA Q+ + ++ L     +    CIGG  V  + R
Sbjct: 111 QNID------TSVRKVQALILAPTRELAQQIHKVVQTLSDFMSISCHACIGGTRVMEDVR 164

Query: 120 DLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             Q    H+VVGTPGR+ D I+ + L+   +KA  LDEADEML  GF++ I  I    P 
Sbjct: 165 VFQSETPHVVVGTPGRVFDMIQRRALDTGSIKAFCLDEADEMLSRGFKEQIYEIFQFMPA 224

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   +  + + + +D +R+ +  +      I    V +     +   + +
Sbjct: 225 TCQVGLFSATMPDDVLEMTQKFMRDPIRILVKKDELTLEGIKQFYVAVEREDWKLETLCD 284

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +I++ +TR  V      + E  F V +L G++ Q++R   ++  R G  RV
Sbjct: 285 LYETLNITQSIIYTNTRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRV 344

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LV++ +L +N EN +HR GR+GR GRKG+++  I     R   
Sbjct: 345 LITTDLLARGIDVQQVSLVVNYDLPTNKENYIHRIGRSGRFGRKGVAINFITSEDARAMR 404

Query: 358 RLFR 361
            +  
Sbjct: 405 EIEE 408


>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 501

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/424 (26%), Positives = 201/424 (47%), Gaps = 12/424 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++       +A+ + G+ ++T VQ   + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 37  KNFKDLKLSDPTLKAIEKMGFTSMTPVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 96

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   + +F P +    + I PTRELA+Q+   +  L         + IGG +  +E  
Sbjct: 97  EML--HSLKFKPRNGTGVIVITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAE 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++        +LKA+V+DEAD +L++GF D+++ I+   P 
Sbjct: 155 KLIKGVNMLVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPN 214

Query: 179 KRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + R  M  +            ++       + V    +      ++   V+     R   
Sbjct: 215 EDRQSMLFSATQTTKVEDLARISLRKGPLFINVVTERDTSTADGLEQGYVVCESDKRFLL 274

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +  
Sbjct: 275 LFSFLKRNQKKKIIVFLSSCNSVRYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAE 334

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQ 353
             + + TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  N  
Sbjct: 335 RGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNEL 394

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  + A V +     P+ + A  +   ++++     L  I  D  +      A H 
Sbjct: 395 GFL-RYLKAAKVPLNEFEFPTNKIANVQSQLEKLISSNYHLHQIAKDGYRSYLQAYASHS 453

Query: 413 PEKI 416
            + +
Sbjct: 454 LKTV 457


>gi|255085454|ref|XP_002505158.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226520427|gb|ACO66416.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 675

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/384 (28%), Positives = 176/384 (45%), Gaps = 16/384 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F     P+ I + L+ +G    T +Q   L   L  +D++  A TGSGK++ F L +
Sbjct: 227 IKTFREMKFPKPIIDELTRKGIARPTPIQIQGLPVILSGRDIIGIAFTGSGKSLTFVLPM 286

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELE-------WLYAKTGVVVAVCI 109
               + E  R        P+ L + P+RELA Q    +E               ++    
Sbjct: 287 IMAAMMEEHRMPLEGGEGPVGLILCPSRELARQTHEVIEGFTVELAKQGMAQMRIMLCIG 346

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G  S  +       G H+V  TPGRL D +  K +N+   K + +DEAD M+DLGF DDI
Sbjct: 347 GVDSREQSDIVRNAGVHMVTATPGRLKDLLHKKRMNLDICKYLCMDEADRMVDLGFEDDI 406

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I      +R+ L+FSAT+   I   A++   + + VN+      + D+      V   
Sbjct: 407 RDIYSFFKSQRQTLLFSATMPEKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQE 466

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       ++FC  +  V    + L     + VA+ G   Q ER  A+  
Sbjct: 467 AKIVYLLECLQKTAPP-VLIFCENKGDVDDIHEYLLLKGVEAVAIHGGKGQDERDWAISE 525

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  R  V +ATDVA +G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I 
Sbjct: 526 FKAQRKDVLVATDVAGKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFIN 585

Query: 350 QNMQR----RAERLFREANVSVVW 369
           +N         + L REA   +  
Sbjct: 586 KNQSETILLDLKHLLREAKQRIPP 609


>gi|303844|dbj|BAA02152.1| eukaryotic initiation factor 4A [Oryza sativa Japonica Group]
 gi|12381900|dbj|BAB21260.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 413

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 191/374 (51%), Gaps = 10/374 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDYA------VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 215 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR       K+         A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFVNTRKVDWLTDKMRGRDHTV-SATHGDMDQNTRDIIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 393

Query: 359 LFREANVSVVWEPA 372
           + R  NV +   PA
Sbjct: 394 IQRFYNVVIEELPA 407


>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658649|emb|CAZ29701.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 879

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 176/368 (47%), Gaps = 5/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + +  + + T +Q       L  +D++  AQTGSGKT +F L          
Sbjct: 84  FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIVH-AKAQ 142

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L + PTRELA QV +  E      G   A   GG S   +   L     
Sbjct: 143 PSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEALGQSPE 202

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  ++      R+ LM+S
Sbjct: 203 VVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQTLMWS 262

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++  D +++N+ S     + +I     ++  S++   ++++L      
Sbjct: 263 ATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLNSFDNA 322

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + L +  F   A+ G+  Q+ER  AL M R+G   V +ATDVA+
Sbjct: 323 RVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDMFREGHISVLVATDVAS 382

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FRE 362
           RG+D+ D+  +I+ +  S  E+ +HR GRTGR+ +KG +         R A  L    +E
Sbjct: 383 RGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARELIEVLKE 442

Query: 363 ANVSVVWE 370
           A  ++  E
Sbjct: 443 ARQTIPDE 450


>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/372 (33%), Positives = 190/372 (51%), Gaps = 13/372 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+ + +A+   GY   T++Q       L+  D++  A+TGSGKTVAF       +    +
Sbjct: 10  PKPLLDAVKRAGYTEPTAIQSQSWPIALQGYDMISVAKTGSGKTVAFLFPGLMHIAERGN 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P+ LA+APTRELA Q+  E     +  GV      GG    R+ + L+N   I
Sbjct: 70  GRN-ARGPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQLRNRPQI 128

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            + TPGRL D +  + +++S    VVLDEAD MLD+GF   I  IL   P  R+ L F+A
Sbjct: 129 CIATPGRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDRQTLFFTA 188

Query: 188 TISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRY---- 241
           T   A+  +A     + ++VNI   ++   + DI     + +  +++  ++ IL      
Sbjct: 189 TWPKAVIRVATAILTNPIQVNIGDTDQLVANKDITQTIEVCSGFEKEKRLMEILNNPPEG 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VFCST+    +  + +         + G+  Q+ER   L   R GR  V +AT
Sbjct: 249 CDPLKALVFCSTKRMCDQLGRSVGNLA---GIIHGDKEQRERDWILNQFRQGRTPVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP---QNMQRRAER 358
           DVAARG+D+ D  LVI+ +  +  E+ +HR GRTGRAG+KG +   I     NM R+   
Sbjct: 306 DVAARGLDVKDCNLVINYDFPNQIEDYVHRIGRTGRAGKKGWAFSFIDGGEGNMARKLIP 365

Query: 359 LFREANVSVVWE 370
           + R+AN  V  E
Sbjct: 366 ILRDANQIVSPE 377


>gi|308185825|ref|YP_003929956.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
 gi|308056335|gb|ADO08507.1| ATP-dependent RNA helicase dbpA [Pantoea vagans C9-1]
          Length = 460

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 206/409 (50%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F    ++P    + L E GY ++T VQ A L   L+ +DV   A+TGSGKT AFG+ 
Sbjct: 1   MTAFSTLNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       S      AL + PTRELA QVG  L  L   T  +  + + G      
Sbjct: 61  LLHHID------STRFQTQALILCPTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DHI  + L +  L  +VLDEAD ML++GF +D+E I++++
Sbjct: 115 QRDSLVHPPHIVVGTPGRILDHINRENLKLDQLSTLVLDEADRMLEMGFLNDMETIIEAT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    IT ++  +Q+DA+ V     +   S             +   ++
Sbjct: 175 PASRQTLLFSATWPDGITAISTRFQRDALSVVTEDVSELPSIDQQFFEASHNE-KLGLLI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L       + L G+L Q++R   L    +G  R
Sbjct: 234 ALLSDRQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +L+ +PE  LHR GRT RAG  G++V ++  +   RA
Sbjct: 294 VLVATDVAARGLDIKSLAMVVNYQLAWDPEVHLHRIGRTARAGEHGVAVSLVAADEMARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       + W  A ++    ++ + + L   +    I G  K  + 
Sbjct: 354 HALEDFLQQKLPWVSASTL----KKGSSKPLPAAMMTLCIDGGRKAKIR 398



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 26/75 (34%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
             G S+          +  G K K     ++  L   +G   + IG I + P   +V + 
Sbjct: 373 KKGSSKPLPAAMMTLCIDGGRKAKIRPGDILGALTGEAGYRAEQIGKIVLTPTHAYVAIE 432

Query: 515 ADGVDLLRRTVKLDK 529
           A+        +K  K
Sbjct: 433 ANQAKAALVKLKQGK 447


>gi|194227730|ref|XP_001492319.2| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX53
           (DEAD box protein 53) (DEAD box protein CAGE)
           (Cancer-associated gene protein) (Cancer/testis antigen
           26) (CT26) [Equus caballus]
          Length = 624

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 195/387 (50%), Gaps = 7/387 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE+ P+V+ +++ + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 223 FEHYPEVL-KSIKKAGFQRPTPIQSQAWPIVLQGMDLIGVAQTGTGKTLSYLIPGFIHLD 281

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG +   + + +  
Sbjct: 282 SQPISREERNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCVYGGGNRKEQIQHITK 340

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D    K +N+  +  +VLDEAD+MLDLGF   I  IL      R+ +
Sbjct: 341 GVDIIIATPGRLNDLQMNKCVNLRSITYLVLDEADKMLDLGFEGQITKILLDVRPDRQTV 400

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    I  LA++Y K+ + V + + +      +    ++    ++   I   LR  
Sbjct: 401 MTSATWPHTIRQLARSYLKEPMIVYVGTLDLVAVHTVKQDIIVTTEEEKRTLIQEFLRNL 460

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             ++ AI+F S +      +  L+     V +L G   Q +R  AL   R GR ++ IAT
Sbjct: 461 APEDKAIIFVSRKLVADDLSSDLSIQGVPVQSLHGNREQFDREQALDDFRSGRVKILIAT 520

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAER 358
           D+AARG+D+ D+  V + +   N E  +HR GRTGRAG+ G+SV ++ Q   +      +
Sbjct: 521 DLAARGLDVRDVTHVYNYDSPKNLEEYVHRVGRTGRAGKTGVSVTLMTQADWKIATELIK 580

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +   AN SV  +     E  + +  ++
Sbjct: 581 ILERANQSVPEDLLKMAEQCKLQKGKK 607


>gi|148379972|ref|YP_001254513.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153932857|ref|YP_001384271.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936987|ref|YP_001387810.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289456|emb|CAL83553.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928901|gb|ABS34401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932901|gb|ABS38400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 376

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 187/371 (50%), Gaps = 8/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  + D      A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPDID------AIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGM 354

Query: 359 LFREANVSVVW 369
           + +E    +  
Sbjct: 355 IEKEIKFKIPR 365


>gi|75287517|sp|Q5VQL1|RH14_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|55296348|dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|222617825|gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group]
 gi|240065031|gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza sativa Japonica Group]
 gi|240065056|gb|ACS44655.1| ATP-dependent RNA helicase DB10 [Oryza sativa Indica Group]
          Length = 708

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 180/375 (48%), Gaps = 9/375 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++   P  I   + + G+   T +Q       LR +D++  A+TGSGKT+ + +    
Sbjct: 181 TFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIP--G 238

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +  + +    P  L ++PTRELA Q+  E +     + +      GG     + RD
Sbjct: 239 FILLKRLQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRD 298

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR
Sbjct: 299 LERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKR 358

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LMF+AT    +  +A +       V +    +   +  I     ++   ++   +  I
Sbjct: 359 QTLMFTATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQI 418

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + I+   +   +           +   A+ G+ SQ ER + L   R GR  + 
Sbjct: 419 LRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPIL 478

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++         + A  
Sbjct: 479 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASD 538

Query: 358 --RLFREANVSVVWE 370
             ++   AN SV  +
Sbjct: 539 LVKILEGANQSVSQQ 553


>gi|3775987|emb|CAA09196.1| RNA helicase [Arabidopsis thaliana]
          Length = 748

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 216/417 (51%), Gaps = 13/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++        P  L +APTRELA QV +E++        V     GGVS   ++  L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSAL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285

Query: 182 MLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   +        +   +   V    E        Y     + S R      I
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V 
Sbjct: 346 TVYAKGGKTIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 404

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L R+      +   P+V  + E  A +++     L+ +  D  K       K   EK
Sbjct: 465 LERDVGCHFEFISPPTVGDLLESSADQVV---ATLNGVHPDSIKFFSATAQKLYEEK 518


>gi|79328737|ref|NP_001031943.1| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|108861893|sp|Q8L7S8|RH3_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 3, chloroplastic;
           AltName: Full=Protein EMBRYO DEFECTIVE 1138; Flags:
           Precursor
 gi|19347898|gb|AAL85971.1| unknown protein [Arabidopsis thaliana]
 gi|20259537|gb|AAM13888.1| unknown protein [Arabidopsis thaliana]
 gi|20453225|gb|AAM19851.1| At5g26752 [Arabidopsis thaliana]
 gi|21689779|gb|AAM67533.1| unknown protein [Arabidopsis thaliana]
 gi|23397145|gb|AAN31856.1| unknown protein [Arabidopsis thaliana]
 gi|25090432|gb|AAN72300.1| At5g26752/At5g26752 [Arabidopsis thaliana]
 gi|27311701|gb|AAO00816.1| Unknown protein [Arabidopsis thaliana]
 gi|110739485|dbj|BAF01652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332006182|gb|AED93565.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 748

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 216/417 (51%), Gaps = 13/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++        P  L +APTRELA QV +E++        V     GGVS   ++  L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSAL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285

Query: 182 MLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   +        +   +   V    E        Y     + S R      I
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V 
Sbjct: 346 TVYAKGGKTIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 404

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L R+      +   P+V  + E  A +++     L+ +  D  K       K   EK
Sbjct: 465 LERDVGCHFEFISPPTVGDLLESSADQVV---ATLNGVHPDSIKFFSATAQKLYEEK 518


>gi|30690260|ref|NP_680225.2| emb1138 (embryo defective 1138); ATP binding / ATP-dependent
           helicase/ RNA binding / helicase/ nucleic acid binding /
           zinc ion binding [Arabidopsis thaliana]
 gi|20856975|gb|AAM26693.1| At5g26743 [Arabidopsis thaliana]
 gi|28416497|gb|AAO42779.1| At5g26743 [Arabidopsis thaliana]
 gi|332006181|gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana]
          Length = 747

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 216/417 (51%), Gaps = 13/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++        P  L +APTRELA QV +E++        V     GGVS   ++  L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSAL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285

Query: 182 MLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   +        +   +   V    E        Y     + S R      I
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V 
Sbjct: 346 TVYAKGGKTIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 404

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L R+      +   P+V  + E  A +++     L+ +  D  K       K   EK
Sbjct: 465 LERDVGCHFEFISPPTVGDLLESSADQVV---ATLNGVHPDSIKFFSATAQKLYEEK 518


>gi|289742973|gb|ADD20234.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 616

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 174/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +  +GY   T +Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 140 FPDYVMKEIKRQGYKVPTPIQAQGWPIAMSGHNFVGIAKTGSGKTLGYILPAIVHINNQQ 199

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 200 P-LSRGEGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 258

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  IL      R+ LM+S
Sbjct: 259 IVIATPGRLIDFLAAGATNLKRCTYLVLDEADRMLDMGFEPQIRKILSQIRPDRQTLMWS 318

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + + +   +      +         
Sbjct: 319 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVIEICDENDKETKLKSLLSQIYDT 378

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 379 GENPGKIIIFVETKRRVDHLVRYIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 438

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAE 357
           TDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR+  KG S     +N     +   
Sbjct: 439 TDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRSNTKGTSYAFFTRNNAKQSKALL 498

Query: 358 RLFREANVSV 367
            + +EAN  +
Sbjct: 499 EVLKEANQEI 508


>gi|260887674|ref|ZP_05898937.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
 gi|260862554|gb|EEX77054.1| ATP-dependent RNA helicase DeaD [Selenomonas sputigena ATCC 35185]
          Length = 436

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 194/361 (53%), Gaps = 6/361 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+ +G    T VQE  +      +D +V AQTG+GKT+AF L L   +        
Sbjct: 2   LVDALARQGIREATLVQEQAIPAVRSGRDAIVQAQTGTGKTLAFLLPLLERIKGN----- 56

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
            A    AL ++PTRELA+Q  R  + L    G+  A+  GG  + R++  L+    +++ 
Sbjct: 57  -ARVAQALVVSPTRELAMQTARVAKTLADAVGIRTALVYGGQDIERQKDKLRQKPQLIIA 115

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL DH+R   + +S +  +VLDEADE++ LGF +D+E +L++     ++++FSAT+ 
Sbjct: 116 TPGRLLDHLRRHSVELSQVNKIVLDEADELMRLGFVEDVETMLEALAGDHQLMLFSATMP 175

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             I  L + Y K+   + +  E    ++I+   V      + + +  +L  +    A+VF
Sbjct: 176 ERIRALTRRYMKEPREITVQPECVTLANIEQVIVDTREDTKLDKLCELLNKYQPYLAMVF 235

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+  V+  T  LA   + V  L G+L+Q +R+  ++  R+ + ++ + TD+AARG+D+
Sbjct: 236 CHTKQKVAHVTLELAGRGYLVDELHGDLTQTQRNLVMRRFREAKLQILVVTDIAARGLDI 295

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
             +  V + +L  + E  +HR GRTGRAG KG++V  +  +   +  R+       +  E
Sbjct: 296 EGVTHVFNYDLPQDTEWYIHRIGRTGRAGAKGLAVTFVNAHQYDQLRRIEAGIKARLTKE 355

Query: 371 P 371
            
Sbjct: 356 K 356


>gi|322806278|emb|CBZ03846.1| ATP-dependent RNA helicase BA2475 [Clostridium botulinum H04402
           065]
          Length = 376

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 187/371 (50%), Gaps = 8/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDVLKKQRIIEPTPIQEESIMLIKSGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  + D      A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPDID------AIQGLIITPTRELAIQITEEAMKLKEAKDLNILATYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LDEENPFMAIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGM 354

Query: 359 LFREANVSVVW 369
           + +E    +  
Sbjct: 355 IEKEIKFKIPR 365


>gi|261314221|ref|ZP_05953418.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
 gi|261303247|gb|EEY06744.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 462

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 193/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P    V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|254706759|ref|ZP_05168587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
           pinnipedialis M163/99/10]
          Length = 535

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 193/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P    V++ +L   PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGSSHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
 gi|133775654|gb|EBA39474.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
           25986]
          Length = 749

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/487 (26%), Positives = 205/487 (42%), Gaps = 31/487 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  A+   GY   T VQ   +   L  +D+L +AQTG+GKT AF L   + L    
Sbjct: 53  LSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMNNLEHIA 112

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                                     P+ L I PTRELA Q+      +   TG V    
Sbjct: 113 PPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADVTGHVAVTV 172

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGVS   +   L+ G  I+V TPGRL D I     ++  +K +VLDEAD MLD+GF   
Sbjct: 173 VGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRMLDMGFLPA 232

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           +  I+  +P +R+ L+FSAT+         +   D  RV IA        +D     V++
Sbjct: 233 VRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATSTADTVDQFVFPVSI 292

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++N +   L+  G +  IVF  T+       + L     +  A+ G  SQ +R  AL 
Sbjct: 293 EAKNNLLPEFLKKEGPERTIVFMRTKHRADSCCRRLERKGIKAAAIHGNRSQAQRERALS 352

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RDG   V +ATDV ARGID+ D+  V++ ++ + P + +HR GRTGRAG  G ++  +
Sbjct: 353 AFRDGTVDVLVATDVLARGIDISDVRYVVNFDVPAEPTDYIHRIGRTGRAGELGWAITFV 412

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            +        + +  + +           I +     +  +P  +D  + D         
Sbjct: 413 TEQDVDEFYEIEKLMDKTA---------DIYDAGDLHVGPNPPAVDP-ERDPAAFKVKKK 462

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR---DRFRDDSRAFKVGGGSRDNFKG 465
            K    K      +  R G    ++   V+  S R   +R  D  R  +   G +   + 
Sbjct: 463 TKRGKSKSKKKLEQARRDGKRNGDDYGDVAGRSNRGCGERRGDGERPSRPKRGGKTRVRE 522

Query: 466 SSWFSLS 472
                + 
Sbjct: 523 GVQARVD 529


>gi|304395420|ref|ZP_07377303.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304356714|gb|EFM21078.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 460

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 206/409 (50%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F    ++P    + L E GY ++T VQ A L   L+ +DV   A+TGSGKT AFG+ 
Sbjct: 1   MTAFSTLNSLPDSQLDNLREMGYTSMTPVQAATLPAILQGRDVRAQAKTGSGKTAAFGIG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       S      AL + PTRELA QVG  L  L   T  +  + + G      
Sbjct: 61  LLHHID------STRFQTQALILCPTRELADQVGNVLRQLARFTRNIKVLTLCGGQPMSA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DHI  + L +  L  +VLDEAD ML++GF +D+E I++++
Sbjct: 115 QRDSLVHPPHIVVGTPGRILDHINRENLKLDQLNTLVLDEADRMLEMGFLNDMETIIEAT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    IT ++  +Q+DA+ V     +   S             +   ++
Sbjct: 175 PASRQTLLFSATWPDGITAISTRFQRDALSVVTEEVSELPSIDQQFFEASHNE-KLGLLI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L       + L G+L Q++R   L    +G  R
Sbjct: 234 ALLSDRQPSSCVVFCNTKRECDDVAAALNARDISALPLHGDLEQRDRERVLIRFANGSGR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +L+ +PE  LHR GRT RAG  G++V ++  +   RA
Sbjct: 294 VLVATDVAARGLDIKSLAMVVNYQLAWDPEIHLHRIGRTARAGEHGVAVSLVAADEMARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       + W  A ++    ++ + + L   +    I G  K  + 
Sbjct: 354 HALEDFLQQKLPWVSASTL----KKGSSKPLPAAMMTLCIDGGRKAKMR 398



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
             G S+          +  G K K     ++  L   +G     IG I + P   +V + 
Sbjct: 373 KKGSSKPLPAAMMTLCIDGGRKAKMRPGDILGALTGEAGYRADQIGKIVLTPTHAYVAIE 432

Query: 515 ADGVDLLRRTVKLDK 529
           A+        +K  K
Sbjct: 433 ANHAKAALVKLKQGK 447


>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
 gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
          Length = 674

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 177/372 (47%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P    + +    Y   T +Q   +   +  +DV+  A+TGSGKT+AF + L   +  + 
Sbjct: 87  LPASCLDVIKRLNYTAPTPIQAQAVPAIMSGRDVIGVAKTGSGKTIAFLIPLFRHIKDQR 146

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+AL + PTRELA Q+ RE +       +      GG  +  +  DL+ GA 
Sbjct: 147 P-LEPMEGPIALVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADLKKGAE 205

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+++    R+ +
Sbjct: 206 IIVCTPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIINNIRPDRQTV 265

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NIL 239
           +FSAT    + +LA+   K  + + +   +   ++I+    +     +   ++     + 
Sbjct: 266 LFSATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQIVEVREEDTKFMRLLEILGQMY 325

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F     +     + L    +  ++L G   Q +R   +   + G   + I
Sbjct: 326 NEDPDCRTLIFVDRHEAADNLLRELMRKGYLCMSLHGGREQVDRDATIADFKAGVVPIVI 385

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  V  I    +R +  +
Sbjct: 386 ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCVTFIEPEQERYSVDI 445

Query: 360 FREANVSVVWEP 371
           +R    S    P
Sbjct: 446 YRALKASNASVP 457


>gi|301118572|ref|XP_002907014.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262108363|gb|EEY66415.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 2091

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 188/382 (49%), Gaps = 6/382 (1%)

Query: 11   IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
            + + + + GY    ++Q+  L   +  +DV+  A+TGSGKT+AF L +   +LA+     
Sbjct: 1501 MLQLIKKHGYEEPFAIQKQALPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHVLAQPP-LQ 1559

Query: 71   PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                P+ + +AP RELA Q+  E        G+      GG SV  +  +L+ G+ IV+ 
Sbjct: 1560 ENEGPIGIIMAPARELAQQIYVEARKFSKGLGLRATAVYGGSSVSEQIANLKRGSDIVIC 1619

Query: 131  TPGRLCDHIRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            TPGR+ D +      +     +  VVLDEAD M D+GF   I  I+ +    R+ L+FSA
Sbjct: 1620 TPGRMIDILCMSAGKMVSLQRVTYVVLDEADRMFDMGFEPQITKIMMNIRPDRQTLLFSA 1679

Query: 188  TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-N 246
            T   ++ +LA+   K  V + + + +    DI     +    D+   ++ +L     K N
Sbjct: 1680 TFPRSVESLARKVLKKPVEITVGTRSTASGDITQYVEVREEDDKFMRLLQLLGLWYEKGN 1739

Query: 247  AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
             +VF + + +  +  + L +  +  ++L G   Q +R   +   +     V +AT VA R
Sbjct: 1740 ILVFVNKQQACDQIFQDLMKAGYPALSLHGGKDQVDRDYTIDDFKRKVRTVMVATSVAGR 1799

Query: 307  GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
            G+D+ DL LVI+    ++ E+ +HR GRTGRAGRKG +   I  + +  +  L +    +
Sbjct: 1800 GLDVKDLVLVINYHCPNHMEDYVHRVGRTGRAGRKGTAYTFISPDEEEYSVDLVKALENA 1859

Query: 367  VVWEPAPSVEAIRERDAQRILQ 388
                P P + A+ E    ++ +
Sbjct: 1860 KQTIP-PELTALAEGFTAKVKR 1880


>gi|226289876|gb|EEH45360.1| ATP-dependent RNA helicase HAS1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 607

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/474 (24%), Positives = 212/474 (44%), Gaps = 14/474 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ +  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 134 NLSEKTMKAIEDMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 191

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 192 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLAKGV 251

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 252 NLLIATPGRLLDHLQNTQGFIFRNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTM 311

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   + + L+
Sbjct: 312 LFSATQTTKVEDLARISLRPGPLYINVDHRKEYSTVEGLEQGYVICDSDKRFLLLFSFLK 371

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      + +    I 
Sbjct: 372 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLIC 431

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 432 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 491

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    PS + +  +   ++++    +L+    D  +      A H    +  
Sbjct: 492 -KEARVPVVEFDFPSKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFN 550

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                 +++ ++   +      ++L +   R +        G   +   K    
Sbjct: 551 VHKLDLVKVAKSFGFSTPPRVDITLAASMSRDKKQQGRRTYGSQPKHASKFKRR 604


>gi|84994532|ref|XP_951988.1| ATP-dependent RNA helicase [Theileria annulata strain Ankara]
 gi|65302149|emb|CAI74256.1| ATP-dependent RNA helicase, putative [Theileria annulata]
          Length = 455

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 188/381 (49%), Gaps = 9/381 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  A  E G+   T +Q   +   L  KD++  A+TGSGKT AF + +  
Sbjct: 42  TFEDLGVCVELCRACKELGWKTPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQ 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R        +L +APTREL++Q+  +L         V  +  G   V +  + 
Sbjct: 102 KLLEKPQR------LFSLILAPTRELSLQIKEQL-ISLEIGLDVCLILGGLDMVSQALQL 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +    IV             KG ++  +K +VLDEAD++L   F D +  I+ S PK +
Sbjct: 155 SKKPHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSADFDDSLNKIIISLPKDK 214

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              ++SAT++  IT L K      +++N+ ++   +  +  + +L+ L  +   +  IL 
Sbjct: 215 VTYLYSATMTSKITKLQKVTLMKPIQINVNTKYHTNELLIQKYLLIPLKFKYTYLACILW 274

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     +VFC+T  +  + T  L    F+ V L G+LSQ +R N+L   + G   + + 
Sbjct: 275 KYSTSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGLFNILVV 334

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV +RGID+P ++LVI+ ++ +  ++ +HR GRT RAG+ G+S+ +I Q      +R+ 
Sbjct: 335 TDVGSRGIDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLTLITQYDIEAFQRIE 394

Query: 361 REANVSVVWEPAPSVEAIRER 381
              N  +      S E +  +
Sbjct: 395 YALNKKLEEYKDISEEEVYSK 415


>gi|217973860|ref|YP_002358611.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217498995|gb|ACK47188.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 451

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 190/396 (47%), Gaps = 6/396 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  K
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHK 178

Query: 180 RRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR  +  +                +  A     A+ +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHYEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLA 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 VLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +++      +      P +EA       +  Q P  
Sbjct: 359 KKVQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAK 394


>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
 gi|160419162|sp|A7ENE0|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1114

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 178/367 (48%), Gaps = 8/367 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 495 LDVIKKLGYDKPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LKN 553

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  P+ L + PTRELA Q+ +E +      G+      GG  +  +  DL+ GA I+V T
Sbjct: 554 SDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCT 613

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ +      G+  N+  +  VVLDEAD M D+GF   +  + ++    R+ ++FSAT
Sbjct: 614 PGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSAT 673

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGA 244
           +   +  LAK   +  V + +   +    +I     +    ++ + ++ +          
Sbjct: 674 MPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGELYNADED 733

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +       K L    +  +++ G   Q +R + +   + G   + IAT VA
Sbjct: 734 ARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVA 793

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  I +  ++ +  + +   
Sbjct: 794 ARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALE 853

Query: 365 VSVVWEP 371
            S    P
Sbjct: 854 QSGQEVP 860


>gi|255572248|ref|XP_002527063.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223533568|gb|EEF35307.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 650

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 197/391 (50%), Gaps = 23/391 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + +   +    YV  T VQ   +   L  +D++  AQTGSGKT AF   +
Sbjct: 187 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPI 246

Query: 59  ASTLLAEND-------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            S ++           R +    PLAL ++PTREL++Q+  E      +TGV V V  GG
Sbjct: 247 ISGIMKMQGQSAQRPLRGARMVYPLALILSPTRELSMQIHEEARKFSYQTGVKVVVAYGG 306

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             ++++ R+L+ G  I+V TPGRL D +    +++  ++ + LDEAD MLD+GF   I  
Sbjct: 307 APINQQLRELERGVDILVATPGRLVDLLERARVSLQMVRYLALDEADRMLDMGFEPQIRK 366

Query: 172 ILDSSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I++ +   R      ++FSAT    I  LA ++  + + + +         I  R   V 
Sbjct: 367 IVEQNDMPRPGARQTMLFSATFPKEIQRLATDFLFNYIFLAVGRVGSSTDLIIQRVEFVQ 426

Query: 228 LSDRDNAIVNILRYHGAKN-------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            SD+ + ++++L    A          +VF  T+         L  + F   ++ G+ SQ
Sbjct: 427 ESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLYVNGFPATSIHGDRSQ 486

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           QER  AL+  R G   + +ATDVAARG+D+P +  V++ +L ++ ++ +HR GRTGRAG+
Sbjct: 487 QEREQALRSFRSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGK 546

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G++     +   ++      L +E+N  V 
Sbjct: 547 SGLATAFFNEGNASLAMALADLMQESNQEVP 577


>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
 gi|160419161|sp|A6RW79|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|150848404|gb|EDN23597.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
          Length = 1151

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 97/367 (26%), Positives = 179/367 (48%), Gaps = 8/367 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +++ GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 566 LDVITKLGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LKG 624

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
           +  P+ L + PTRELA Q+ +E +      G+      GG  +  +  DL+ GA I+V T
Sbjct: 625 SDGPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCT 684

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ +      G+  N+  +  VVLDEAD M D+GF   +  + ++    R+ ++FSAT
Sbjct: 685 PGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSAT 744

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGA 244
           +   +  LAK   +  V + +   +    +I     +    ++ + ++ +          
Sbjct: 745 MPRIMDALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKFHRLLELLGELYNTDED 804

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F   +       K L    +  +++ G   Q +R + +   + G   + IAT VA
Sbjct: 805 ARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDSTIDDFKAGVVPIMIATSVA 864

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  I +  ++ +  + +   
Sbjct: 865 ARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALE 924

Query: 365 VSVVWEP 371
            S    P
Sbjct: 925 QSGQEVP 931


>gi|24216134|ref|NP_713615.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45656634|ref|YP_000720.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24197378|gb|AAN50633.1| DEAD/DEAH box helicase [Leptospira interrogans serovar Lai str.
           56601]
 gi|45599869|gb|AAS69357.1| ATP-dependent RNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 540

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 200/376 (53%), Gaps = 10/376 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE +     +  A+ E GY  LT +QE  +   L  KD+   AQTG+GKTVAF + +
Sbjct: 1   MK-FEELSIHPKLLSAIQEIGYTELTPIQEKSIPHGLEGKDITGLAQTGTGKTVAFLIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
              +L +           AL +APTREL +Q+  E + L   + G+     IGG     +
Sbjct: 60  IHNILTKG-----IQGIAALVLAPTRELTMQIAEEAKKLLKHSEGIRSVPIIGGTDYKSQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +DL+    I+V TPGRL D I+   ++IS+++  VLDEAD MLD+GF  DI ++L    
Sbjct: 115 NKDLEGLNGIIVATPGRLIDMIKSGSIDISNVEFFVLDEADRMLDMGFIQDIRWLLHKCK 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +++ L++SAT+S  +  LA  +  + V + I  E      ID + V +   ++   + N
Sbjct: 175 NRKQTLLYSATLSVEVMRLAYRFLNEPVEIQINPEKIITERIDQKIVHLGREEKIPYMTN 234

Query: 238 -ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I+        I+F + +A++ +    L ++   V  +S EL Q++R   L+  + G+ R
Sbjct: 235 LIINSKEEGQGIIFTNYKANIPKIVYTLRKYGVPVTGISSELDQKKRLRLLRDFKSGKYR 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVA+RGID+ ++++V + +L  + EN +HR GRT RAGRKG ++    ++     
Sbjct: 295 YMVATDVASRGIDVENIDIVYNYDLPQDTENYVHRIGRTARAGRKGKAIGFCSESDYVEL 354

Query: 357 ERLFREANVSVVWEPA 372
           E++ +     +     
Sbjct: 355 EKIEKYLKQKIEILEV 370


>gi|71029630|ref|XP_764458.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68351412|gb|EAN32175.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 529

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/456 (25%), Positives = 208/456 (45%), Gaps = 13/456 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE + + I  +L+E  +   T +Q   + P L+ KDVL  A+TGSGKT+AF + LA 
Sbjct: 58  FSDFE-LSEPILRSLTENNFTKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPLAE 116

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +F P +    L I+PTREL++Q+      +       + + +GG +  +E   
Sbjct: 117 VLY--QVKFLPRNGTGGLIISPTRELSLQIFEVAREVCKYLPQTLGLVMGGANRKQEEFK 174

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +I++ TPGRL DH++        +L   V+DEAD +L +GF  ++  I+   PK 
Sbjct: 175 LCKGVNILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPKN 234

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNI 238
           R+  +FSAT +  +  LA+   K  V + + S         +   V+    +R   +   
Sbjct: 235 RQTSLFSATHTSNVEDLARLSLKAPVFLEVMSNESATVSGLEQGYVVCEAENRFMLLYTF 294

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +  +  +VF S+  SV    ++L      V ++ G   Q  R             + 
Sbjct: 295 LKKNLDRKVMVFFSSCNSVKFHDELLNYVDIPVKSIHGRKKQTNRLTTYYTFCKSNKGIL 354

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAE 357
           + TDVAARG+D+P ++ ++  +   +P++ +HR GRT R A  KG ++  +         
Sbjct: 355 LCTDVAARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEELGFLH 414

Query: 358 RLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            L +  NV++        + A  +   +++++    L+    D  +        H  + I
Sbjct: 415 YL-KSLNVTINKYEFNLNKIANVQVQLEKLIEKNFHLNRSSKDAYRSYLHAYMSHSLKDI 473

Query: 417 ----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFR 447
               +    R+ +A G   P ++   +  S R + R
Sbjct: 474 FNVHSLDLKRVAKAFGFSTPPKVDLNTKPSNRSKTR 509


>gi|190573992|ref|YP_001971837.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           K279a]
 gi|190011914|emb|CAQ45535.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 458

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 129/377 (34%), Positives = 198/377 (52%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILNGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             ++     R        AL + PTRELA QVG+++  L      +  + + G      +
Sbjct: 61  LQSIDPSLIRV------QALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQ 114

Query: 119 --RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I   +
Sbjct: 115 LASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I  +A++  +DAV V       Q   I +    V  + R  A+ 
Sbjct: 175 HKDRQSLLFSATFPDSIRAMARDLLRDAVEV-TVEGADQAPAIRHLFCEVEPAHRQKALA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +    
Sbjct: 234 GLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + RA
Sbjct: 294 VLVASDVAARGLDVEDLAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRA 353

Query: 357 ERLFREANVSVVWEPAP 373
           E +  +    + W+  P
Sbjct: 354 EAIEAQMGQPLDWQKTP 370



 Score = 64.2 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL------------RIH 424
            + +RD + +L   L L +   +     DV     D E +AA               R+ 
Sbjct: 274 DMEQRDREEVL---LLLANRSCNVLVASDVAARGLDVEDLAAVINYELPTDVESYQHRVG 330

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-------------GGSRDNFKGSSWFSL 471
           R G      +  +SLV+GR++ R ++   ++G               +           +
Sbjct: 331 RTGRAGASGLA-ISLVAGREKTRAEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRI 389

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
             G   K     ++  L   +G++ + IG I + P  ++V ++ +  +     ++  K  
Sbjct: 390 DGGKTDKLRPGDILGALTGDAGLSSKFIGKIAIFPTRSYVAIAREQANKAVAKLEAGKIK 449

Query: 532 QLKY 535
             ++
Sbjct: 450 GRRF 453


>gi|8444|emb|CAA37037.1| unnamed protein product [Drosophila melanogaster]
          Length = 575

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 143 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 202

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 203 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 262 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 321

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 322 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 381

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 382 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 441

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 442 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 501

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 502 VDVLREANQEI 512


>gi|91792106|ref|YP_561757.1| ATP-dependent RNA helicase SrmB [Shewanella denitrificans OS217]
 gi|91714108|gb|ABE54034.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 411

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 184/386 (47%), Gaps = 9/386 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+      + ++L   G+   T++Q+  +   + ++D+L  A TG+GKT +F L    
Sbjct: 2   LFEDFHLDHSLLDSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    RF   +    L + PTRELA Q+ R    L    G+ +++  GGV    +   
Sbjct: 62  HLIDFPRRFDGQA--RVLVLTPTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I++ TPGRL +++     + + ++ +V+DEAD MLD+GF   ++ I   +   +
Sbjct: 120 LAGNVDIMIATPGRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCK 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           + ++FSAT+             D          R      ++ +      + +   + N+
Sbjct: 180 QKMLFSATLEGGGVQRFARELLDDPVTVDVEAPRSEKAKIHQWIHLADDQTHKFALLCNL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR    K  IVF  TR  V+    +L +       + G++ Q++R  AL     G   + 
Sbjct: 240 LRQESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   +
Sbjct: 300 LATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVSK 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     +       +E +R  + +
Sbjct: 360 IERYIEQPLKRRV---IEELRPNNKE 382


>gi|327275873|ref|XP_003222696.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Anolis
           carolinensis]
          Length = 924

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGIPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  +      +R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSVASHVRPERQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + DI     + A        +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDITQIVEIFASGPNKWNWLTSRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   + G   V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHSLGLLHGDMDQSERNKVISDFKKGAFPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE-- 362
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R   
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTHKDSNFAGDLVRNLE 618

Query: 363 -ANVSVVWE 370
            AN +V  E
Sbjct: 619 GANQNVSKE 627


>gi|169850031|ref|XP_001831713.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
 gi|116507149|gb|EAU90044.1| ATP-dependent RNA helicase ded-1 [Coprinopsis cinerea okayama7#130]
          Length = 653

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 21/383 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S    E 
Sbjct: 178 LDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILSASFTEG 237

Query: 67  DRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            R  P +A           P AL +APTREL  Q+  E      ++ V  AV  GG  ++
Sbjct: 238 PRPPPETAAPTYGRARKAYPTALILAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIN 297

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R ++ G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I+  
Sbjct: 298 QQLRQIERGCDLLSATPGRLVDLIERGRISLANVKYLVLDEADRMLDMGFEPQIRRIVQG 357

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                       MFSAT    I  LA+++ KD + +++        +I  +   V   D+
Sbjct: 358 EDMPGVNDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYVEDGDK 417

Query: 232 DN---AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            +    I+           +VF  T+      +  L  +     ++ G+ +Q+ER  ALQ
Sbjct: 418 RSVLLDILASQSKEDMGLTLVFVETKRMADMLSDFLIGNNMPATSIHGDRTQREREMALQ 477

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R GR  + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G+S    
Sbjct: 478 TFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNVGVSTAFF 537

Query: 349 ---PQNMQRRAERLFREANVSVV 368
               +N+ R    L REAN  + 
Sbjct: 538 NRGNKNIVRDLVELLREANQEIP 560


>gi|301123369|ref|XP_002909411.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262100173|gb|EEY58225.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 411

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 170/371 (45%), Gaps = 9/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  ++V+  A+ G+GKT AF +     
Sbjct: 39  FEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEK 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                           L + PTRELA+Q    ++ +    G+   V  GG S+  +   L
Sbjct: 99  TDTSKKHI------QVLILVPTRELALQTSAIVKEIGKHMGIECMVSTGGTSLKDDIMRL 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HI+VGTPGR+ D       ++S    V++DEAD++L   F+  +E +L+ + K+R+
Sbjct: 153 YQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQ 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    +      + ++   +N+  E             V    + + +  +   
Sbjct: 213 ICLFSATFPVTVKAFKDRFVENPYEINLMDELTLKGV-SQFYAFVEERQKVHCLNTLFSK 271

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R+G  R  + +
Sbjct: 272 LDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCS 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    R+ +
Sbjct: 332 DLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIEQ 391

Query: 362 EANVSVVWEPA 372
           E    +   P 
Sbjct: 392 ELGTEIRPIPP 402


>gi|156375512|ref|XP_001630124.1| predicted protein [Nematostella vectensis]
 gi|156217139|gb|EDO38061.1| predicted protein [Nematostella vectensis]
          Length = 446

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 177/379 (46%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I       G+   T +Q       L  ++++  AQTGSGKT++F L  
Sbjct: 57  VTTFEESAFPDYIQSYFKREGFTEPTMIQAQGWPVALTGRNLVGIAQTGSGKTLSFILPG 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +     P   P+ L + PTRELA QV      +     +      GG     + 
Sbjct: 117 IVHINHQ-PLLQPGDGPIVLVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQI 175

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L+ G  I + TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+D    
Sbjct: 176 RELERGVEICIATPGRLIDMLESRKTNLRRCTYLVLDEADRMLDMGFEPQIRTIIDQIRP 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA ++  D V + + S     +  I     +    ++++ ++ 
Sbjct: 236 DRQTLMWSATWPKEVQGLAHDFLSDYVHITVGSLGLTANHKILQIVDVCEDHEKEHKLLK 295

Query: 238 ILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +L     +     ++F  T+      T+ L    +  + + G+ +Q ER   L   R G 
Sbjct: 296 LLEEIMGEKENKTLIFTETKRRADELTRKLRSDGWPAMCIHGDKAQPERDWVLSEFRKGH 355

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + +ATDVA+RG+D+ D++ VI+ +  +  E+ +HR GRT R+ R G S      N  +
Sbjct: 356 APILVATDVASRGLDISDIKFVINFDFPNCTEDYVHRIGRTARSDRTGTSYTFFTVNNAK 415

Query: 355 RAERL---FREANVSVVWE 370
           +A+ L    +EA   V  +
Sbjct: 416 QAKELVSVLQEAKQHVNPK 434


>gi|308805024|ref|XP_003079824.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116058281|emb|CAL53470.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 425

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 169/370 (45%), Gaps = 9/370 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 53  FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFSIPILEK 112

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    +         A+ + PTRELA+Q  +  + L    GV V V  GG S+  +   L
Sbjct: 113 VDTSKNII------QAVILVPTRELALQTSQVCKELGKHLGVAVMVTTGGTSLKDDIMRL 166

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VV TPGRL D        +     + +DEAD++L   F+  I  +++   K R+
Sbjct: 167 HQPVHVVVATPGRLVDLASKGVAKLGQATMLAMDEADKLLSPEFQPVIGQVINFMAKNRQ 226

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT    +      Y +    +N+  E             V    + + +  +   
Sbjct: 227 ILLYSATFPVTVKDFKDKYLRKPYVINLMEELTLKGI-TQYYAFVEERQKVHCLNTLFSK 285

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 286 LQINQSIIFCNSVTRVELLARKITELGYSCFYIHAKMIQAHRNRVFHDFRNGACRNLVSS 345

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I  + +    R+ +
Sbjct: 346 DLFTRGIDIQSVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAVNLITYDDRMNLFRIEQ 405

Query: 362 EANVSVVWEP 371
           E    +   P
Sbjct: 406 ELGTEIQQIP 415


>gi|313674606|ref|YP_004052602.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941304|gb|ADR20494.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 405

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 183/371 (49%), Gaps = 9/371 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N    + E L   G+   T +Q   +   L  KD++  AQTG+GKT AF L + 
Sbjct: 1   MEFKELNFHPTLSEGLEMMGFQKATPIQTEAIPKILEGKDLIACAQTGTGKTAAFVLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
             +    +          L IAPTREL  Q+ +++E     T            G +  +
Sbjct: 61  HKIANSGE----TKGVNTLIIAPTRELVQQIDQQIEGFSYFTNASSIAIYGGGDGAAWEQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +++ ++ G  I+V TPGRL   +      + +++ ++LDEAD MLD+GF DDI  I+   
Sbjct: 117 QKKAIRAGVDILVATPGRLIALLNSNETQLDNVQHLILDEADRMLDMGFHDDIMRIVKQL 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR+ L+FSAT+ P I  LA     +   +   S ++  + I  +A L     +   + 
Sbjct: 177 PQKRQTLLFSATMPPKIKKLAGAILNNPEEI-SLSISKPAAGISQKAFLTYDGHKTQLLK 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     + AIVF   +  V    + L +    V A S +L Q+ER   ++  R  + +
Sbjct: 236 FILGSGIYETAIVFAGKKDKVKSLERDLKDIGMSVKAFSSDLDQKEREIIMRDFRAKKVQ 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I TD+ +RGID+ ++ LV++ ++  +PE+ +HR GRT RA  KG ++  I +    + 
Sbjct: 296 VLIGTDIISRGIDVENISLVVNYDVPGDPEDYVHRIGRTARAATKGEAITFINEMDMEKF 355

Query: 357 ERLFREANVSV 367
            R+      S+
Sbjct: 356 NRIEALIEKSI 366


>gi|301753949|ref|XP_002912858.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 122/461 (26%), Positives = 201/461 (43%), Gaps = 25/461 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKH 411
           +  +    +     E A  ++ + + +  R  +  + L++   DEKK ++      L   
Sbjct: 363 IEEQIKKKLEELSVEEAKVLQILTQVNVVR-RECEIKLEAANFDEKKEINKRKQLILEGK 421

Query: 412 DPEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
           DP+  A   A   +I +      E++  V L     R   +
Sbjct: 422 DPDLEAKRKAELAKIKQKNRRFKEKVERVLLQQKTARAGPE 462


>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 379

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/360 (31%), Positives = 200/360 (55%), Gaps = 7/360 (1%)

Query: 28  EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87
           +  +   +   D++  AQTG+GKT AF L +   +            P AL +APTRELA
Sbjct: 1   QQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHRIDPSK------REPQALILAPTRELA 54

Query: 88  VQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           +QV    E    +   V  V   GG  +  + + ++NGA IVV TPGRLCDH+R     +
Sbjct: 55  LQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQIVVATPGRLCDHLRRDEKVL 114

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
           + +  +VLDEADEML LGF DD+E I  + P+ ++ ++FSAT+  +I  +A+ + +D   
Sbjct: 115 ATVNHLVLDEADEMLKLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKH 174

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           V I ++ +  + I+   +LV    + +A++++L        I+F  T+ +       L  
Sbjct: 175 VKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEA 234

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             ++  AL+G+++Q +R   ++ ++DGR  + +ATDVAARG+D+P +  V + ++  +PE
Sbjct: 235 KGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPE 294

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
           + +HR GRTGRAGR+G ++ ++    +R  + + R     V     P  +A+ +   +++
Sbjct: 295 SYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTGQKVAEVRLPDAQAVLDARIKKL 354


>gi|237746640|ref|ZP_04577120.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
 gi|229377991|gb|EEO28082.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
          Length = 461

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 123/391 (31%), Positives = 197/391 (50%), Gaps = 25/391 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   I +AL+   Y   T VQ   +   +  KD+LVS+QTGSGKT AF L    
Sbjct: 2   TFETLGLHPSILKALAGIHYDIPTPVQTKAIPLAIEGKDLLVSSQTGSGKTAAFMLPALH 61

Query: 61  TLLAENDRFS---------------------PASAPLALAIAPTRELAVQVGRELEWLYA 99
               +    +                      A+ P  L + PTRELA+Q+    E   A
Sbjct: 62  RFATQKISETSQKTPNQQRQSAKAKGERARFKAAQPKMLVLTPTRELALQIVSSTEQYSA 121

Query: 100 KT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158
                     +GG+   ++ + L     I+V TPGRL DH++   +    L+ +VLDEAD
Sbjct: 122 CLKHFRTVAILGGMPYPKQMQLLARNPEILVATPGRLIDHMQSGKIRFDQLEILVLDEAD 181

Query: 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
            MLD+GF DDIE ++ ++P  R+ ++FSAT+   +  +A++   DA  ++I S   +H +
Sbjct: 182 RMLDMGFIDDIETVIAATPATRQTMLFSATLDGIVGKMARSVTHDAESIHITSSASRHEN 241

Query: 219 IDYRAVLVAL-SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I+     V     ++  + + L+      A+VF +T+         LA   F   AL G+
Sbjct: 242 IEQMIHYVDDLPHKNRLLAHWLQDRSLGQALVFTATKRDADLVADRLAIAGFSTAALHGD 301

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           + Q  R+  L  +RDG+ ++ +ATDVAARGID+P +  V + +L   PE+ +HR GRTGR
Sbjct: 302 MPQNARNRTLAKLRDGKVKILVATDVAARGIDIPSITHVFNYDLPKFPEDYVHRIGRTGR 361

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           AGR G+++ ++  +     +R+ R    ++ 
Sbjct: 362 AGRHGLAISLVSHSDSASMKRIERFTKQTIP 392


>gi|315643920|ref|ZP_07897090.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315280295|gb|EFU43584.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 559

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 143/485 (29%), Positives = 238/485 (49%), Gaps = 28/485 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   +     L E+G    T VQ+  +   +  KDV+  A+TG+GKT+AF L +
Sbjct: 1   MPNFQQLGIDEQRVRKLKEQGITVPTPVQQESIPLLIDGKDVIARARTGTGKTLAFMLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHR 116
              +  +         P AL IAPTRELA+Q+  E +        G+ +    GG  V +
Sbjct: 61  LQQIDPKRA------YPQALIIAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEK 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + R L+ G H+++GTPGRL DH+R   L +  +K +VLDEAD+ML +GF DD+E ++ + 
Sbjct: 115 QLRKLEGGRHLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDDVEALIHAL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAI 235
           P +R+ ++FSAT+   +  LA NY    V + I   +    +   + V+      + +A+
Sbjct: 175 PYRRQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQDAL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++  +    AI+FC T+   S     L  H +Q   L G+LSQ +R   ++  RD + 
Sbjct: 235 RTMIEQYNPFLAIIFCRTKRRASILNDALLAHGYQSDELHGDLSQAKREAVMKRFRDAKL 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  GM++          
Sbjct: 295 QLLVATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGNGMAITFAAGKDLND 354

Query: 356 AERLFREANVSVVWEPAPSVE-AIRE------RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            +R+    ++ +      S   ++RE      RDA R  ++   + S++ D ++      
Sbjct: 355 LQRIEEGISLRLKRVRYDSGAGSLRESTGDSGRDAGRP-RNTRSVSSLESDNERGQGRGR 413

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSRDN 462
           A        +G  R + +G    E+       S RD          + RA +  G S   
Sbjct: 414 ADRGT---GSGRSRGNHSGSARGEQSRGRGESSRRDERGTGRVSSREGRAGEGRGPSLAG 470

Query: 463 FKGSS 467
            +GSS
Sbjct: 471 ERGSS 475


>gi|309751440|gb|ADO81424.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae R2866]
          Length = 418

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 373

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 374 EEYIGHSIP---------VSQYETEALLELP 395


>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
          Length = 392

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 201/381 (52%), Gaps = 11/381 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+ +   + I +++ E G+   T +QE  ++  L  KDV+  A TGSGKT+AF   +
Sbjct: 1   MKSFKELGIIEPILKSIEEEGFERPTEIQEKSISLILSGKDVIAEAATGSGKTLAFAADI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                    +    +    L + PTRELA QV   L        + +    GGVS++ + 
Sbjct: 61  IE-------KTEKGTGIRTLVLTPTRELAQQVAAALSLFSKYKPLRIVAVFGGVSINPQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                 A +VVGTPGR+ DHI  + LN+S +  +VLDEAD MLD+GF  D++ I+   P+
Sbjct: 114 -TQLRRADVVVGTPGRILDHIGRRTLNLSKVNILVLDEADRMLDMGFIPDVKKIVGECPR 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSATIS  IT LA+ YQKD +    A      S +      V  + + + +V++
Sbjct: 173 NRQTLLFSATISREITVLARKYQKDPI-SVSAEAYVDPSKLTQLYYDVPDNLKFSLLVHL 231

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L++  ++  +VFC+TR +       L       +A+ G L+Q +R   ++       RV 
Sbjct: 232 LKHEESELVMVFCNTRTNTDFVASNLKALGIGAMAIHGGLTQDKRDRVMKQFHSHDVRVL 291

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P +  + + ++    ++ +HR GRT RAG+ G+++ ++         R
Sbjct: 292 VCTDVAARGLDIPHVSHIYNYDIPMYGKDYIHRIGRTARAGKDGVAINILASRDYDSFRR 351

Query: 359 LFREANVSVVWEPAPSVEAIR 379
           + +   V++  E  P V+ +R
Sbjct: 352 VMKSNEVTITEEKLPDVKKVR 372


>gi|170583206|ref|XP_001896476.1| ATP-dependent RNA helicase T26G10.1 in chromosome III [Brugia
           malayi]
 gi|158596304|gb|EDP34674.1| ATP-dependent RNA helicase T26G10.1 in chromosome III, putative
           [Brugia malayi]
          Length = 462

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 229/438 (52%), Gaps = 15/438 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +    V+ EA     +   T VQ A L    +++D++  A+TGSGKT AF + +  
Sbjct: 25  TFQKLGVTDVLCEACDRLNWKKPTKVQIAALPHAFKKRDIIGLAETGSGKTAAFAIPILQ 84

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +        AL + PTRELA Q+G + E L A  G+++AV +GGV    +   
Sbjct: 85  ALLETPQK------LFALVLTPTRELAFQIGEQFEALGASIGILIAVIVGGVDTVTQSLA 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H++V TPGRL DH+      N+  LK +V+DEAD +L++ F  ++E IL   PK+
Sbjct: 139 LAKRPHVIVATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEVELEKILKVIPKE 198

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  ++SAT++  +  L +    D VR+ ++S+ +    +    + +    ++  ++ IL
Sbjct: 199 RRTYLYSATMTKKVAKLERASLNDPVRIEVSSKYQTVDKLKQYYIFIPYKYKEAYLIYIL 258

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + AIVFCST AS  +   +L +  F  V L G++SQ +R  +L   +   + V +
Sbjct: 259 NEMAGQTAIVFCSTCASALKTALMLRKLGFGAVPLHGQMSQAKRLGSLNKFKSKASTVLV 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVA+RG+D+P +++V++ ++ +  ++ +HR GRT RAGR G+++  + Q      +++
Sbjct: 319 CTDVASRGLDIPHVDIVLNYDVPTQSKDYVHRVGRTARAGRSGVAITFVTQYDVEIYQKI 378

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQRILQDPLF-LDSIQGDEKKMVDVLLAK-HDP 413
            R     +        + +    R  +AQ++ +  +  ++  +G +++  D    + +D 
Sbjct: 379 ERLIGKKLPLFETVENDVMLLVERVEEAQKLAKQEMKEMEEKKGRKRRQFDDDDDEVNDA 438

Query: 414 EKIAAGFLRIHRAGLCAP 431
           E+ +A   ++ R      
Sbjct: 439 EESSAFRKKLKRKQKGTH 456


>gi|2500518|sp|Q40465|IF411_TOBAC RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11;
           AltName: Full=ATP-dependent RNA helicase eIF4A-11
 gi|485987|emb|CAA55737.1| unnamed protein product [Nicotiana tabacum]
          Length = 413

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 188/367 (51%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYS- 105

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H
Sbjct: 106 -----LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR G +GR GRKG+S+  + ++ +R    + +  NV
Sbjct: 341 RGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNV 400

Query: 366 SVVWEPA 372
            +   PA
Sbjct: 401 VIEELPA 407


>gi|145638288|ref|ZP_01793898.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
 gi|145272617|gb|EDK12524.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
          Length = 415

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 198/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 11  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P AL +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 71  LLTHQDPNLEYPHPRALILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 131 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 191 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 250

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 251 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 310

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 311 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 370

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 371 EEYIGHSIP---------VSQYETEALLELP 392


>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
 gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           rubrum CBS 118892]
          Length = 1180

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 102/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 559 LDVIRKLGYERPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 617

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+++ + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 618 MEGPISVIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 677

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 678 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 737

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 738 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 797

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 798 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 857

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 858 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 917

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 918 LKQSGQPVPEPIQKMVN-----------AFLDKVKEGKEK 946


>gi|224067501|ref|XP_002193843.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
           [Taeniopygia guttata]
          Length = 617

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 175 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 234

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+            +  A+CIG
Sbjct: 235 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPPLRCALCIG 294

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 295 GMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 354

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 355 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEA 414

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 415 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 473

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           RDG+  V  ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 474 RDGKKDVLGATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 533

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 534 ACDESVLMDLKALLLEAKQKVPP 556


>gi|156549811|ref|XP_001606554.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 456

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 126/433 (29%), Positives = 202/433 (46%), Gaps = 25/433 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   NI   I + L   G    T +Q+  +   L  KD +  A+TGSGKT+AF L +
Sbjct: 1   MTEFTDLNISSWIIDQLKLIGVKKPTPIQQNCIPAILSGKDCIGCAKTGSGKTLAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA Q+G +   +     +     +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGIFALVLTPTRELAFQIGDQFAAIGKTINLKKCTIVGGMDMVVQG 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++L    HIVV TPGRL DH+      +++ +K +VLDEAD +L   F + +  I  + P
Sbjct: 115 QELARHPHIVVATPGRLADHLESCNTFSLARIKFLVLDEADRLLGGHFDEQLSVIFKALP 174

Query: 178 KKRRMLMFSATISP--AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           K R+ L+FSATI+            +         S      ++D R VL     RD  +
Sbjct: 175 KNRQSLLFSATITDALDKVKQVSTKEWFIWESTDDSGVATVKELDQRYVLCPKDVRDAFL 234

Query: 236 VNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V ++R   A N     ++F  T  +    +  L E  F  VAL   + Q+ER +AL   +
Sbjct: 235 VEVIRTFRADNENGSIMIFTDTCKNCQLLSMTLNEVGFDNVALHAMIKQKERLSALSKFK 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
               ++ IATDVAARG+D+P + LVI+  + + P+  +HR GRT RAGR GM+V ++   
Sbjct: 295 SNHTKILIATDVAARGLDIPIVALVINHNIPNIPKEYIHRVGRTARAGRGGMAVSLVTPY 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKKM 403
                  +       +        E +         +R+A+  L +  F +    +++K 
Sbjct: 355 DINLLHAIEETIGTKLTEFKVEDKEIVNIFTQISVTKREAEIKLDETDFYEKKMINKRK- 413

Query: 404 VDVLLAKHDPEKI 416
             ++L   DP+++
Sbjct: 414 -KLILEGKDPDEV 425


>gi|254360747|ref|ZP_04976895.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
 gi|153091317|gb|EDN73291.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica PHL213]
          Length = 411

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 194/397 (48%), Gaps = 3/397 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  AL  +G+   T +Q       L+ KD+   AQTG+GKT+AF +A  + LL  N
Sbjct: 15  IHANVLNALDSKGFEFCTPIQAKTFPITLKGKDIAGQAQTGTGKTLAFLIATFNHLL-NN 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  +  + P AL +APTRELAVQ+G + E     + + +A+  GG    ++ ++++ G  
Sbjct: 74  EIETSKNQPRALILAPTRELAVQIGADAELFLKHSDLKLALAYGGDGYDKQVQEIEKGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-- 184
           I+VGT GR+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++  +PK    L   
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPKPSERLTLL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  + I    +    I       +  D+   ++ +L     
Sbjct: 194 FSATLSAKVRELAYEDMDNAEYIEIEPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       + L+    +V  L+G++ Q++R + L     G   + + TDVA
Sbjct: 254 ERCMIFANTKHKCEEIWQYLSADGHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G S+    +        +     
Sbjct: 314 ARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIG 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
             +          +      R      FL   + + +
Sbjct: 374 HQIPVSQYDKESLLTLPKVNRSRSKKTFLAKTKKNSR 410


>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|74657573|sp|Q5BDW4|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
 gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
 gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
           [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 200/423 (47%), Gaps = 26/423 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + G+ +LTS+Q   +   +  +DV+  A+TGSGKT+AF + +   +  +      
Sbjct: 553 LDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRP-LEN 611

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ ++ +       +      GG  +  +  +L+ GA I+V T
Sbjct: 612 MEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 671

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 672 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSAT 731

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 732 FPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDEN 791

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +++F   + +     + L    +  +++ G   Q +R + ++  + G   V IAT 
Sbjct: 792 EDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATS 851

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 852 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKA 911

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-----LLAKHDPEKIA 417
              S    P    EA+     Q+++    FL+ ++  ++K  +       L + D E+ A
Sbjct: 912 LKQSGQEVP----EAV-----QKLVDS--FLEKVKAGKEKASNSGFGGKGLERLDQERDA 960

Query: 418 AGF 420
           A  
Sbjct: 961 ARM 963


>gi|300122033|emb|CBK22607.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F + +   +    
Sbjct: 3   LNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDPS- 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q  + L  +     V    C+GG S+  + R L  G  
Sbjct: 62  -----LMETQALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQ 116

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I  + L   ++K +V+DE DEML+ GF++ +  I    P   ++++ S
Sbjct: 117 VVSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVS 176

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   +  +   +  + V++ +  +      I    V +     + + + ++       
Sbjct: 177 ATMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTIT 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V      L E  F V ++ G++ Q+ER   ++  R G +RV IATDV  
Sbjct: 237 QAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWG 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+ +  +          + +  + 
Sbjct: 297 RGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQYYST 356

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 357 QIDEMPM 363


>gi|171680181|ref|XP_001905036.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939717|emb|CAP64943.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1221

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 200/421 (47%), Gaps = 15/421 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + +   GY   T +Q   L   +  +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 587 LTRPILDTIEGLGYEKPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHI-KDQ 645

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  S    P+AL + PTREL  Q+  +L        +      GG ++  +  +L+ GA 
Sbjct: 646 DPVSGDDGPIALIMTPTRELCTQIYTDLLPFTKVLKLRAVAAYGGNAIKDQIAELKRGAE 705

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D +      +++LK    +VLDEAD M D+GF   +  I ++    R+ +
Sbjct: 706 IIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI 765

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  L K   +D V + +   +    +I     ++  S +   ++ +L    
Sbjct: 766 LFSATMPRIIDALTKKVLRDPVEITVGGRSVVAPEITQVVEIIDESKKFVRLLELLGELY 825

Query: 244 AK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           A      A++F   +       + L    +  +++ G   Q++R++ +   + G   + I
Sbjct: 826 ADDDDVRALIFVERQEKTDDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILI 885

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ ++ ++ E+ +HR+GRTGRAG  G +V  I +  +  A  +
Sbjct: 886 ATSVAARGLDVKQLKLVINYDVPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGV 945

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +    S    P   +  +R+   +++            D        L + D E+ AA 
Sbjct: 946 AKALEQSGQPVP-ERLNEMRKSWKEKVKAGKA------KDASGFGGKGLERLDKEREAAR 998

Query: 420 F 420
            
Sbjct: 999 L 999


>gi|163859073|ref|YP_001633371.1| putative ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
 gi|163262801|emb|CAP45104.1| putative ATP-dependent RNA helicase [Bordetella petrii]
          Length = 584

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 197/378 (52%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +  AL   G+   T VQ A +   L   D++VS+QTGSGKT AF L   +
Sbjct: 2   SFETLGLAPTLLSALQAAGFSAPTPVQAAAIPQALAGHDLMVSSQTGSGKTAAFMLPALN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +  +    +       L + PTRELA+QV            G+  A  +GG+    + +
Sbjct: 62  RIAGQPG--NKGVGVQVLVLTPTRELALQVTEATGSYGRNLPGLRTATVVGGMPYGAQLK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  P++
Sbjct: 120 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNI 238
           R+ L+FSAT+   +  LA    ++  R+ +A +  +H++I    +     S +   + ++
Sbjct: 180 RQTLLFSATLDGTVAKLAARMMREPQRIEMAGQKEKHTNITQSLLYADDASHKMQLLDHV 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G+ R+ 
Sbjct: 240 LRDAKLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLTQLQRGQLRIL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G +  +     + +  R
Sbjct: 300 VATDVAARGIDVQGISHAVNFDLPMQAEDYVHRIGRTGRAGRDGQAYTLATHAERHKVRR 359

Query: 359 LFREANVSVVWEPAPSVE 376
           +      S+  E    +E
Sbjct: 360 IEHYIGQSITPETIAGLE 377


>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
 gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
           PW2]
          Length = 618

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 193/364 (53%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P +I +A+    Y   T VQ A +   L ++D+L +AQTG+GKT AF L   S 
Sbjct: 59  FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118

Query: 62  LLA-----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           L        + R +    P  L I PTRELA Q+      +  +T  +    +GGV  + 
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNP 178

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++  L+ G  I+V TPGRL D I     N+S ++ +V+DEAD MLD+GF   ++ I+  +
Sbjct: 179 QKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALT 238

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT+        ++  +D VRV IA+       +D   + V+   +++ +V
Sbjct: 239 PPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVSFDSKNDVLV 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+  GA   IVF  T+       + L        A+ G+ SQ +R  AL+  RDGR+ 
Sbjct: 299 EVLKREGASRVIVFMRTKHRADSCCRRLTHAGISAAAIHGDRSQAQRERALKAFRDGRSD 358

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDV ARGID+ D+  V++ ++   P + +HR GRTGRAG  G ++  + +      
Sbjct: 359 VLVATDVIARGIDISDVRYVVNFDVPGEPIDYIHRIGRTGRAGEVGWALTFVTRQDIDEF 418

Query: 357 ERLF 360
             + 
Sbjct: 419 YDIE 422


>gi|270010045|gb|EFA06493.1| hypothetical protein TcasGA2_TC009390 [Tribolium castaneum]
          Length = 691

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 222/476 (46%), Gaps = 8/476 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S+  +V+ T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 143 NLSRPLLKAISDMKFVHPTPIQASTIPVALMGRDICGCAATGTGKTAAYMLPTLERLLYR 202

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P +    L + PTREL VQV +  + L   + + + + +GG+ +  +   L+   
Sbjct: 203 PVGGPPVT--RVLVLVPTRELGVQVYQVTKQLAQFSDIQIGLAVGGLDLKAQETILRKNP 260

Query: 126 HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH++         ++ ++LDEAD MLD  F + ++ I+    + R+ ++
Sbjct: 261 DIVIATPGRLIDHLKSTPTFGLDSIEVLILDEADRMLDEYFAEQMKEIIKQCARTRQTML 320

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT++  + +LA       VR+ + S       +    V +      DR+  +  ++  
Sbjct: 321 FSATMTEEVESLAAVSLNKPVRLFVDSNREVAFGLRQEFVRIRQDKEGDREAILAALVCR 380

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ +VF  T+    R   +L     +V  L G L+Q +R +ALQ  ++ +  V +AT
Sbjct: 381 TFREHCMVFVQTKKQAHRLHILLGLLGLKVGELHGNLTQPQRLDALQKFKETQIDVLVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 441 DVAARGLDIQGVQTVINFVMPATVEHYIHRVGRTARAGRAGVSVSLAGEQERKIVKDVVK 500

Query: 362 EANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +A   V      P +    +   +++      +   + +E+++  V    +  EK+  G 
Sbjct: 501 KAKHPVKSRVIPPDILEKYKNKLEKLEPQIAQILQEEYEERQVAKVENQVNKVEKLLKGE 560

Query: 421 LRIHRAGLCAPEEITPVSLV-SGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
               R      ++        S +D  ++ S   K                  +G 
Sbjct: 561 KGEARPWFQTKKQRKDEKKRLSLKDVPKNKSDKDKRKHKKGAKETPDERVRSEMGK 616


>gi|297569193|ref|YP_003690537.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925108|gb|ADH85918.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 528

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 191/366 (52%), Gaps = 4/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ +  A+   G+   T +Q  IL P L   D    AQTG+GK+ AF +++ + LL E
Sbjct: 106 DLPQELMRAIHASGFQYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLLRE 165

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            D      A P AL +APTRELA+Q+ R+ E L   + +      GG    ++R+  +  
Sbjct: 166 PDTVPRQLALPKALILAPTRELAIQIHRDAEELTQYSELNCVAVFGGTDYEKQRKMFEQA 225

Query: 125 A-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +++ TPGRL D  R K +++  ++ +V+DEAD +LD+GF  D+  I+  +P+K +  
Sbjct: 226 PVDLLIATPGRLLDFARQKVVSLKEVRVLVIDEADRLLDMGFIPDVRRIIQQTPEKSQRQ 285

Query: 184 --MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT++  I  L+  + KD V V I  E      ++ R  +V   ++   + N++  
Sbjct: 286 TLFFSATLNSQIANLSAQWTKDPVTVEIEPEQVASDRVEQRVYMVTAKEKMTVLYNLITG 345

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVFC+ R    R  + L  H      LSGE+SQQ+R   L   ++G+ RV +AT
Sbjct: 346 KQLERVIVFCNRRDVTRRVRERLYRHGISCAMLSGEVSQQQRMKTLDNFKEGKIRVLVAT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RG+ +  +  VI+  L  + E+ +HR GRTGRAG  G+SV    +        +  
Sbjct: 406 DVAGRGLHIEGISHVINYNLPEDAEDYVHRIGRTGRAGASGISVSFADEEESFYLPAIEE 465

Query: 362 EANVSV 367
                +
Sbjct: 466 YMGRKL 471


>gi|254491416|ref|ZP_05104595.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224462894|gb|EEF79164.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 402

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 181/369 (49%), Gaps = 7/369 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + +  A S++GY   T +Q+  +   L  +DVL  A TG+GKT AF L L   
Sbjct: 3   FEDLMLDESLLLAASDKGYKEPTLIQQEAIPLLLAGEDVLACAATGTGKTAAFVLPLLQK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL E +       P AL +APTRELA Q+   +  L       +A+  GG +   +   L
Sbjct: 63  LLDEPNH---GRLPKALILAPTRELAFQIQHVIHHLGKANQPHIAMVTGGQAPTAQLAYL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  IV+ TPGRL + +  +  ++S ++ VV+DEAD MLD+G   D+  +L +     +
Sbjct: 120 ENGCDIVIATPGRLLNLVENEQADLSEIEFVVIDEADRMLDMGQGPDVANVLATITTAFQ 179

Query: 182 MLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
             +FSAT++ +   L  N      +     A+            +      +   +  ++
Sbjct: 180 TSLFSATLAGSGVELFANALLPNASRIEVDAANQYAQQVSQQVYLADNREHKQALLAAVI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    ++A++FC+ +      +  L         + G+ +Q +R    +  R G+ +  +
Sbjct: 240 KQTDCESALIFCNKKERAEEVSAFLQSQNISAQVVHGDFNQADRRERTRKFRQGKVKALV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+DLP +  VI+ ++    +  +HR GRTGRAG+ G +V ++  +  +  +R+
Sbjct: 300 ATDVAARGLDLPQVSHVINYDVPFRGDIYIHRVGRTGRAGQTGTAVNLVEPHDHKNLQRV 359

Query: 360 FREANVSVV 368
                  + 
Sbjct: 360 EHHIGQPLP 368


>gi|148973902|ref|ZP_01811435.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
 gi|145965599|gb|EDK30847.1| ATP-dependent RNA helicase DbpA [Vibrionales bacterium SWAT-3]
          Length = 459

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 206/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL +   L  + 
Sbjct: 11  LKPELLHTLDSLGYTEMTPIQALSLPTILNGKDVIGQGKTGSGKTAAFGLGVLQNLRVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GG+ +  +   L++GA
Sbjct: 71  FRV------QSLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF+D ++ ++D++PK+R+ L+F
Sbjct: 125 HILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLEMGFQDALDAVIDAAPKERQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A    ++   V + S +   S   +   L     RD+A+  +L +H  +
Sbjct: 185 SATFPKQIKSVADRIMRNPEMVKVESTHDHSSIQQHFYKLEGSEARDDALELLLLHHQPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V   T  L+   F V+ L G++ Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKKEVQNVTDELSHRGFSVIELHGDMEQRERDQALVQFSNKTISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG+++    +    R  ++    ++
Sbjct: 305 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAISFFSEKEMYRVAQIDEYMDM 364

Query: 366 SVVWEPAPS 374
            +     P+
Sbjct: 365 PIEPSELPA 373



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G K K  A  ++  L    GI+ +S+G I +     +V V         
Sbjct: 381 YSNMVTIQIDGGKKAKLRAGDILGALTGQGGIDGKSVGKINLFAMRAYVAVERSVAKKAL 440

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 441 NKIESGK 447


>gi|198452173|ref|XP_001358660.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
 gi|198131816|gb|EAL27801.2| GA20653 [Drosophila pseudoobscura pseudoobscura]
          Length = 743

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 194/392 (49%), Gaps = 13/392 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE + ++G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 312 QCFAEYPDLLGE-IEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 370

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+   +      GG     +  D+
Sbjct: 371 TEYQSIPRGQRGGANVLVLAPTRELALQIEMEVKK-YSFRDMRAVCVYGGGCRRMQISDV 429

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++ K +++S +  +VLDEAD MLD+GF   I  +L      R+
Sbjct: 430 ERGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQ 489

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNI 238
            +M SAT  P +  LA++Y  + ++V + S +   +    + +                I
Sbjct: 490 TIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAATHSVKQVIELLEDESEKYGIIKSFI 549

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVFC  +A     +  L    F    + G   Q +R  A+  ++ G  R+ 
Sbjct: 550 KNMTKTDKIIVFCGRKARADDLSSDLTLDGFMTQCIHGSRDQSDREQAIADIKSGVVRIL 609

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  I ++    A+ 
Sbjct: 610 IATDVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMAQE 669

Query: 359 ---LFREANVSVVWEPAPSV----EAIRERDA 383
              +  EA+  VV E   S+    +A++ER A
Sbjct: 670 LINILEEADQ-VVPEQLHSMARRFKAMKERRA 700


>gi|109900519|ref|YP_663774.1| ATP-dependent RNA helicase RhlB [Pseudoalteromonas atlantica T6c]
 gi|122971428|sp|Q15N18|RHLB_PSEA6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|109702800|gb|ABG42720.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 421

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 113/348 (32%), Positives = 185/348 (53%), Gaps = 6/348 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  + + +ALS   + + T +Q   L P L   D+   AQTG+GKT+AF +A    
Sbjct: 11  FADLPINEQVVKALSAANFSHCTPIQALSLPPLLEGNDIAGQAQTGTGKTIAFLVATFHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL+          P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R  L
Sbjct: 71  LLSNPQPTK--KQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQSQREKL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I++GT GR+ D+ +    +++ ++  VLDEAD M DLGF  DI ++ +  PK   
Sbjct: 129 EEGVDIIIGTTGRIIDYYKQNIFSLAGIQVAVLDEADRMFDLGFIKDIRYLFNRMPKPTE 188

Query: 182 M--LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              ++FSAT+S  +  LA  +  +   V +  E +  + I       +  D+   +++++
Sbjct: 189 RLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSDEDKMALLLSLM 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +T+ S  +    L     +V  LSG++ Q +R   L+    G+  + +
Sbjct: 249 EEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILV 308

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+  
Sbjct: 309 ATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356


>gi|268679387|ref|YP_003303818.1| DEAD/DEAH box helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617418|gb|ACZ11783.1| DEAD/DEAH box helicase domain protein [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 463

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 135/362 (37%), Positives = 205/362 (56%), Gaps = 10/362 (2%)

Query: 4   FENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++ Q   + E L+  GY N+T +QEA L   L  +D++  A+TGSGKT+AFGL L   
Sbjct: 8   FNHLIQNSAMLETLTRLGYHNMTPIQEASLPFILEGRDIVAKAKTGSGKTLAFGLPLLLA 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRD 120
           L  +  R        ++ + PTRELA QV  EL  L + T    +    GG     +   
Sbjct: 68  LHVKQMRI------QSVVLCPTRELAEQVSAELRKLASFTHNIKIVTLCGGARFVPQCIS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+  H++ K +N  H+K +VLDEAD MLD+GF +DIE I+   PK+R
Sbjct: 122 LEHGAHIVVGTPGRILQHLQEKTINFEHIKTLVLDEADRMLDMGFYEDIEKIIAKMPKER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS-DIDYRAVLVALSDRDNAIVNIL 239
           + L+FSAT    I  + +  QK+A+++++  E +     I   A+ V   +++  +   L
Sbjct: 182 QTLLFSATFPREIEQMCQEVQKEALQISVEEEQKSAPLSISQIALKVEEREKEATLEAFL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K+ I+FC T+ +VS     L E  F  + L G+L Q  R   L +  +G A++ +
Sbjct: 242 LNEMPKSVIIFCKTKVAVSALQSSLYEAGFDALCLHGDLEQIARDENLLLFANGSAQILV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+ D+E+VI+ EL    E   HR GRTGR G++G ++  +  + +     L
Sbjct: 302 ATDLAARGLDIKDVEMVINYELPHTIEIYTHRIGRTGRMGKEGKAISFVTPSEESFLHEL 361

Query: 360 FR 361
            R
Sbjct: 362 ER 363



 Score = 54.2 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL----LRRTVK 526
           +  G KQK  A  ++ +L +  G+    IG I +     +V +  +  D     L  T  
Sbjct: 393 IDGGKKQKVRAGDILGVLTKDIGLEGSLIGKIDILEKYAYVAIKREYADKAFNGLCATTI 452

Query: 527 LDKGIQLKYLG 537
            ++  ++  LG
Sbjct: 453 KNRRFKIWKLG 463


>gi|222640112|gb|EEE68244.1| hypothetical protein OsJ_26445 [Oryza sativa Japonica Group]
          Length = 2897

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 124/375 (33%), Positives = 190/375 (50%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I + +   G++N T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 604 TFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFI 663

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + +P   P  L +APTRELA Q+  E       + V      GG S   + R+
Sbjct: 664 HL--RRYQNNPMLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGTSKGLQLRE 721

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+D  P+ R
Sbjct: 722 LERGADIVVATPGRLNDILEMRKISLHQVSFLVLDEADRMLDMGFEPQIRKIVDEIPRNR 781

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +T +A +  KD V+VNI S +    +  I     +V   D+   +  I
Sbjct: 782 QTLMYTATWPKEVTKIAGDLLKDPVQVNIGSIDELVANKSITQYVEVVPPLDKQRRLEQI 841

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   ++ G+ SQ ER N L   R GRA + 
Sbjct: 842 LRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGDKSQAERDNVLNQFRTGRAPIL 901

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G+S     +   + A  
Sbjct: 902 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAGD 961

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  E
Sbjct: 962 LVKVLEGANQHVPPE 976


>gi|170039965|ref|XP_001847786.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863566|gb|EDS26949.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 942

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 207/442 (46%), Gaps = 21/442 (4%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           E L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      A
Sbjct: 294 EVLRKLGFEKPTPIQCQAIPAVMSGRDLIGIAKTGSGKTLAFILPMFRHVL-DQPPLEEA 352

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+A+ ++PTREL +Q+G++++       +      GG  +  +  +L+ GA I+V TP
Sbjct: 353 EGPIAIIMSPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAELKRGAEIIVCTP 412

Query: 133 GRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT 
Sbjct: 413 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNIRPDRQTVMFSATF 472

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAI 248
              +  LA+   K  V + +   +    +++   V++    +   ++ +L  +    + I
Sbjct: 473 PRQMEALARRILKKPVEIQVGGRSVVCKEVEQHVVVLEEDAKFFKLLELLGLYQELGSII 532

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG+
Sbjct: 533 VFVDKQENADILLKDLMKASYPCMSLHGGIDQFDRDSTIIDFKQGRVKLLIATSVAARGL 592

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R +  + R   +S  
Sbjct: 593 DVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYSGDIIRALELSGG 652

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---EKIAAGFL---R 422
             P          D  R L +       +  +K       +       E+ AA      +
Sbjct: 653 TIP----------DDLRQLWETYKTTQEEQGKKVHTGGGFSGKGFKFDEQEAAAVNERKK 702

Query: 423 IHRAGLCAPEEITPVSLVSGRD 444
           + +A L   +      L    D
Sbjct: 703 MQKAALGLQDSDDDEDLEQDID 724


>gi|321459437|gb|EFX70490.1| hypothetical protein DAPPUDRAFT_61214 [Daphnia pulex]
          Length = 509

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/397 (29%), Positives = 194/397 (48%), Gaps = 13/397 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+ + EA+  + + + + +Q       L+  D++  AQTG+GKT+AF L     + 
Sbjct: 67  FAHYPE-LLEAVQNQQFKDPSPIQSQAWPVLLKGHDLIGIAQTGTGKTLAFLLPAMIHIE 125

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +    +  S P  L +APTRELA Q+ RE+   +   G+      GG    ++   +  
Sbjct: 126 GQPISRAERSGPSVLIMAPTRELAQQIEREVAK-FPWKGIKCLCVYGGGDRRQQIGAVAK 184

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D ++   L  S +  VVLDEAD MLDLGF   I+ IL      R+++
Sbjct: 185 GVEIVVATPGRLYDLMQAGALKTSSVSYVVLDEADRMLDLGFEPQIKKILIDVRPDRQII 244

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    I  +A  Y  + ++V + + +      +     ++   ++   +++ +R  
Sbjct: 245 MTSATWPEGIRRIANEYMDNPLQVCVGTLDLAACHSVTQHVEILDEEEKRPRLIDFIRAL 304

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF   +    +    L+        + G+  Q +R  AL  +R G  ++ IAT
Sbjct: 305 DPNDKAIVFVGRKLVADQVASELSLIGISCQCIHGDREQIDREQALADLRSGDVKLLIAT 364

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
           DVA+RGID+ D+  +++ +   + E  +HR GRTGRAGR G+++  + +    +A     
Sbjct: 365 DVASRGIDIKDITHILNYDFPRHAEEYVHRIGRTGRAGRTGIAISFMTREDWSKASDLID 424

Query: 359 LFREANVSVVWEPAPSVEAI------RERDAQRILQD 389
           + +EAN  +  E     E        ++ + QR L D
Sbjct: 425 ILKEANQEIPPELIKMSERFGAWKVRKDEERQRNLAD 461


>gi|156089485|ref|XP_001612149.1| eukaryotic translation initiation factor 4A [Babesia bovis T2Bo]
 gi|154799403|gb|EDO08581.1| eukaryotic translation initiation factor 4A, putative [Babesia
           bovis]
          Length = 402

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 185/379 (48%), Gaps = 9/379 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +   G+   +++Q+  + P +   D +  AQ+G+GKT  F +A 
Sbjct: 28  VDSFEALKLNEDLLRGIYSYGFERPSAIQQRGIKPIIENHDTIGQAQSGTGKTATFSIAA 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +           +   L +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 88  LQLIDYS------VVSCQVLILAPTRELAQQIQKVVLALGDYLKVQCHACVGGTIVRDDV 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  K L  + +K  +LDEADEML  GF+  I  +    P 
Sbjct: 142 HKLKAGVHMVVGTPGRVYDMIDKKALLTNKIKLFILDEADEMLSRGFKGQIHEVFRRMPP 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +   R+ +  +      I     ++     + + + +
Sbjct: 202 DVQVALFSATMPNEILELTTKFMRSPKRILVKKDELTLEGIKQFYVMIDKEEYKFDTLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        AI++C+TR  V   T  + E  F V ++ G++SQ ER   ++  R G  RV
Sbjct: 262 LYESVTITQAIIYCNTRRKVDMLTSKMQERDFTVSSMHGDMSQNERDLIMREFRSGSTRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L  +P+N +HR GR+GR GRKG+++  +        +
Sbjct: 322 LITTDLLARGIDVQQVSLVINYDLPMSPDNYIHRIGRSGRFGRKGVAINFLTPMDVECMK 381

Query: 358 RLFREANVSVVWEPAPSVE 376
            +    N  +   PA   E
Sbjct: 382 NIENYYNTQIEEMPAEIAE 400


>gi|185134419|ref|NP_001117665.1| Vasa [Oncorhynchus mykiss]
 gi|6521014|dbj|BAA88059.1| Vasa [Oncorhynchus mykiss]
          Length = 647

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 180/379 (47%), Gaps = 14/379 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   +S+ GY   T VQ+  +      +D++  AQTGSGKT AF L +   
Sbjct: 213 FEEAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPILQQ 272

Query: 62  LLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           L+ +     +FS    P  + +APTREL  Q+  E       T V   V  GG+S     
Sbjct: 273 LMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAHGTCVRPVVVYGGISTGHTI 332

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----IL 173
           R++  G +++  TPGRL D I    + +S L+ +VLDEAD MLD+GF   +        +
Sbjct: 333 REILKGCNVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRKLVGSPGI 392

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            +   ++ ++  +          A   +KD + + +       SD++   V V    + +
Sbjct: 393 PAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKFSKRD 452

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++ +L+  G++  +VF  T+         L        ++ G+  Q+ER  AL   R G
Sbjct: 453 QLLEVLKTTGSERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALGDFRSG 512

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
           R  V +AT VAARG+D+ D++ +++ +L +N +  +HR GRTGR G  G +V        
Sbjct: 513 RCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFFDPGAD 572

Query: 351 -NMQRRAERLFREANVSVV 368
            N+ R   ++   A   V 
Sbjct: 573 GNLARSLVKVLSGAQQEVP 591


>gi|194903791|ref|XP_001980939.1| GG17436 [Drosophila erecta]
 gi|190652642|gb|EDV49897.1| GG17436 [Drosophila erecta]
          Length = 793

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/393 (27%), Positives = 187/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 289 ITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPI 348

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P S          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 349 LNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 408

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 409 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQI 468

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 469 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 528

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 529 VYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 588

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 589 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 648

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 649 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 681


>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
          Length = 770

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 174/382 (45%), Gaps = 16/382 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P+ +   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L + +
Sbjct: 314 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 373

Query: 61  TLLA---ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+    ++ +FS    P A+ + PTREL  Q+  E       T V   V  GG S++ +
Sbjct: 374 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSRGTVVRPVVAYGGTSMNHQ 433

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDLQ G HI++ TPGRL D I    + + H++ V+LDEAD MLD+GF  +I  +  S  
Sbjct: 434 IRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRMLDMGFETEIRKLASSPG 493

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRD 232
              +    +   S       +    D +R +             +D+    + V   D+ 
Sbjct: 494 MPSKSDRHTLMFSATFPDEIQRLAHDFLREDFLFLTVGRVGGACTDVTQSIIQVDQDDKR 553

Query: 233 NA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +           +VF  T+        +L++      ++ G+  QQER  AL+  
Sbjct: 554 AKLLELISDVAETRSRTLVFVETKRGADFLACMLSQEGCPTTSIHGDRLQQEREQALRDF 613

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +     + IAT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +      
Sbjct: 614 KSAVCPILIATSVAARGLDIPKVEHVINYDMPKEIDEYVHRIGRTGRCGNLGRATTFYDN 673

Query: 351 N----MQRRAERLFREANVSVV 368
           N    + R   ++  EA   V 
Sbjct: 674 NKDGELARSLVKILSEAQQEVP 695


>gi|17545671|ref|NP_519073.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
 gi|17427964|emb|CAD14654.1| putative atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 608

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 148/506 (29%), Positives = 220/506 (43%), Gaps = 30/506 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 37  LDERIARALGELNYTQPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFMLPAIQRISEQP 96

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P +                  P  L + PTRELA+QV             +  A  
Sbjct: 97  EPQRPRADGPQQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 156

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S I+ R      
Sbjct: 217 IEAIVGATPASRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARIDQSHIEERLHFTDD 276

Query: 229 -SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 277 LSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTL 336

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 337 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +      +  R+ R  +  +       +E  R    +     P       G         
Sbjct: 397 VNHGDTFQWRRIERFVDRRIDATVVEGLEPKRSPKPRS--GGPRAGGDRGGYRGNGGGNW 454

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             + D      G+      G              G DR     R    G        G  
Sbjct: 455 RGQRD------GYAARTGNGGNGGNSEGRFQRSFGGDRESFAPRRDDRGDRGTGYQGGQQ 508

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSG 493
                 G++  A  R       R+  
Sbjct: 509 R---DWGNRDNAAPRQSYGQQTRNGD 531


>gi|15613948|ref|NP_242251.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
 gi|10174001|dbj|BAB05104.1| ATP-dependent RNA helicase [Bacillus halodurans C-125]
          Length = 438

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 200/407 (49%), Gaps = 20/407 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EALS++G  + T +QE ++      KDV+  +QTG+GKT+AF L +   +  E 
Sbjct: 11  IKKFLLEALSDKGITHPTEIQERLIPAIRNGKDVIGQSQTGTGKTLAFLLPIVDRIEGER 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQ 122
           +         A+  APTRELA Q+  EL+ L             + +GG    R    L+
Sbjct: 71  EEV------QAVITAPTRELAGQIFEELQALLRHVPHDEEIRAKLIVGGTDRSRTLEKLR 124

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IVVGTPGR+ D +  + LN+     +V+DEAD+MLD+GF +D++ +     +  +M
Sbjct: 125 VQPQIVVGTPGRISDLVHEQALNVYTATMLVVDEADQMLDMGFIEDVDKVAARMAENLQM 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSATI   +    K Y  +   V++  +    + I++R V +   D+      +    
Sbjct: 185 MVFSATIPEKLKPFLKKYMNEPRHVHVQPKQATANLIEHRIVPLRHRDKLEITTEVASVL 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVF +T+         +      V  L G L  ++R   ++ +++   +  +ATD
Sbjct: 245 NPFLAIVFTNTKEQADELADAMLAAGLNVERLHGGLQPRQRKQVMKRVKNYEVQYLVATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  +I+  L  + +  +HR GRT RAG  G+++ +     ++   +L + 
Sbjct: 305 LAARGIDIKGVSHIINYSLPKDLDFYVHRVGRTARAGADGIALTIFAPEDEQAVHKLMKR 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
             +   +        +++ + Q++ + PL    + G++++  D  L 
Sbjct: 365 -GIQFTYY------DLKKGEWQKLDKPPL---GVPGEKRRKEDKGLE 401


>gi|119946798|ref|YP_944478.1| ATP-dependent RNA helicase RhlB [Psychromonas ingrahamii 37]
 gi|189040034|sp|A1SZG4|RHLB_PSYIN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119865402|gb|ABM04879.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 418

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 191/378 (50%), Gaps = 10/378 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  + +   L+ +GY   T +Q   L   L  KD+   AQTG+GKT+AF  A+   
Sbjct: 11  FADLPLEKSLISGLTSQGYEYCTPIQALSLPITLTGKDIAGQAQTGTGKTLAFLPAVFHH 70

Query: 62  LLAE-NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL          + P A+ +APTRELA+Q+ ++   L + + + + +  GG  V  +R  
Sbjct: 71  LLTNAQPENRRKNQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGEKVEIQRTK 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L+ G  I++GT GR  D ++   +++  +++VVLDEAD M DLGF  DI ++    P  K
Sbjct: 131 LEKGVDILIGTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYLFRRMPEAK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  ++FSAT+S  +  LA  +  D   + I  E     +I       +  D+   ++++
Sbjct: 191 SRLNMLFSATLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQDKILLLLSL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       AIVF +T+ +  +    LA    +   L+G++ Q +R   LQ   DG   + 
Sbjct: 251 IEEDWPDKAIVFANTKHTCEKVWGYLAGDGLRTGLLTGDVPQNKRLKILQQFTDGEIDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG KG+++    +        
Sbjct: 311 VATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGRAGEKGLAISFACEKYVFNLPA 370

Query: 359 LFREANVSVVWEPAPSVE 376
           +           P P  E
Sbjct: 371 IEEYIK-----HPIPCSE 383


>gi|91762707|ref|ZP_01264672.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718509|gb|EAS85159.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 582

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 199/374 (53%), Gaps = 11/374 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +     +  +L +  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L
Sbjct: 1   MENFKLLKIEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRE 117
            + L+ + + F       AL + PTRELA QV   ++ +   K  +  A+ IGG ++ ++
Sbjct: 61  INKLILDKNAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L N + I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE IL   P
Sbjct: 114 LRQLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   I  +++ Y     R++  S +   + I    + V   ++ + +V+
Sbjct: 174 KDHQTLLFSATLPQNIVRISERYLNKPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+    +  K L E      A+ G+L Q +R   +   R G  R+
Sbjct: 234 QFIARKGS-ILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRI 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++  +  + +    
Sbjct: 293 LIATDVAARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWN 352

Query: 358 RLFREANVSVVWEP 371
            + +  + +    P
Sbjct: 353 EISKLIDPNFKPAP 366


>gi|67972435|ref|NP_001020093.2| probable ATP-dependent RNA helicase DDX49 [Mus musculus]
 gi|76364172|sp|Q4FZF3|DDX49_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX49; AltName:
           Full=DEAD box protein 49
 gi|71051022|gb|AAH99554.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Mus musculus]
          Length = 480

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/445 (26%), Positives = 200/445 (44%), Gaps = 23/445 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT++  +  L      +       +  R    +D R +LV    +D  +V++++  
Sbjct: 183 LLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTF 242

Query: 243 GAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             +    + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHA 362

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVD----VLLAKHD 412
           +  +    +        E ++      ++  +  + L++   DEKK ++    ++L   D
Sbjct: 363 IEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEIKLEASHFDEKKEINKRKQMILEGKD 422

Query: 413 PEKIA---AGFLRIHRAGLCAPEEI 434
           P+  A   A   +I +      E++
Sbjct: 423 PDLEAKRKAELAKIKQQNRRFKEKV 447


>gi|323494189|ref|ZP_08099304.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
 gi|323311583|gb|EGA64732.1| ATP-dependent RNA helicase RhlB [Vibrio brasiliensis LMG 20546]
          Length = 434

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 195/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  +
Sbjct: 16  LHPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTAAFNHLLTTS 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   L++G 
Sbjct: 76  EHEGRKPNQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DVLIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEVKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILDQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + D   ++QD
Sbjct: 367 NLPPIEEYIEHTIPVSDYDPSALIQD 392


>gi|229828479|ref|ZP_04454548.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
 gi|229793073|gb|EEP29187.1| hypothetical protein GCWU000342_00541 [Shuttleworthia satelles DSM
           14600]
          Length = 538

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 193/370 (52%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A+ + GY   T VQE  +   L  +D++  AQTG+GKT AF L +   L    
Sbjct: 69  LKKDLLSAIRKAGYEEPTPVQEESIPVILEGRDMIGCAQTGTGKTAAFALPVLHKL---- 124

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+Q+    +       +      GG     +   L+ GA 
Sbjct: 125 -TLLKRPRVRALVLTPTRELAIQIFDNFKKYGRYLHLRTVCLYGGAKRGPQIGALRRGAD 183

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +++S ++ +VLDEAD MLD+GF  D+  I++S+P KR+ LMFS
Sbjct: 184 ILVATPGRLLDFMGQDLVDLSSVEILVLDEADRMLDMGFLPDVSRIVESTPSKRQTLMFS 243

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LA    KD V+V +  EN     ++ + +  +  D+   I ++L     ++
Sbjct: 244 ATMEKEVRQLADRMLKDPVQVQVTPENEAADTVEQKLIFSSREDKREIIASLLTDEAVES 303

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF  T+    + ++ L     + VA+ G+ +Q +R +AL   + G+ RV +ATDVAAR
Sbjct: 304 AIVFTRTKHGADKLSRELKRRGIESVAIHGDKTQGQRQDALNRFKSGKVRVMVATDVAAR 363

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P L  V + ++       +HR GRTGRAG  G+++ +  +        +       
Sbjct: 364 GLDIPKLSHVFNYDVPEEAGAYIHRIGRTGRAGESGIAITLCCEAELDALREVE-----E 418

Query: 367 VVWEPAPSVE 376
           ++ +P P ++
Sbjct: 419 LLEKPIPELQ 428


>gi|10039329|dbj|BAB13307.1| vasa-related protein CnVAS1 [Hydra vulgaris]
          Length = 797

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 192/375 (51%), Gaps = 12/375 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I E + +  Y+  T VQ+  +      +D++  AQTGSGKT AF + + +TL+  
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418

Query: 66  NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   S   APLAL IAPTRELAVQ+ +E       T +   V  GGV V    R +
Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           Q   H++VGTPGRL D +  + +++++LK ++LDEAD MLD+GF  +I+ I++       
Sbjct: 479 QQDCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538

Query: 181 ---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                LMFSAT    I  LA  +  + V + I      HSDI    + V  S + + ++ 
Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G    +VF  T+         L ++ F   ++ G+  QQ+R  AL   + G   V
Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----QNMQ 353
            IAT VAARG+D+ D++ VI+ +L    E  +HR GRTGR G KG ++        + + 
Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDEGLA 718

Query: 354 RRAERLFREANVSVV 368
           R   +   +A   V 
Sbjct: 719 RALVKTLADAEQEVP 733


>gi|262401852|ref|ZP_06078417.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
 gi|262351824|gb|EEZ00955.1| ATP-dependent RNA helicase DbpA [Vibrio sp. RC586]
          Length = 460

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 216/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+ ++T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFASMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQVAQSVTRNAMMIKVAATHDTSSIRQYFYNVDGSTARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +    IG I + P  ++V V     
Sbjct: 402 DILGALTSDGELTAAQIGKINLFPMRSYVAVEKKIA 437


>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160385736|sp|A7TEF4|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 399

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 183/376 (48%), Gaps = 12/376 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   +   +   G+   +++Q   +   +   DV+  AQ+G+GKT  F + +  
Sbjct: 24  TFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
            +  +           AL ++PTRELA Q+ + +  L         A+  G        R
Sbjct: 84  AIDLKRKD------LQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNR 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSP 177
             +NG  +V GTPGR+ D  +   LN  +++ ++LDEADE+L     F+  I  I    P
Sbjct: 138 MQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLP 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIV 236
              ++++ SAT+S  I  + K +  D V++ +  +      I      +     + + + 
Sbjct: 198 AACQVVVVSATMSKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLC 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++         ++FC+T+  V   +  L +  F VV++ G++ Q++R+  +   R G +R
Sbjct: 258 DLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSR 317

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I+TDV ARGID+  + LVI+ ++    EN +HR GR+GR GRKG+++  I  +   + 
Sbjct: 318 VLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKM 377

Query: 357 ERLFREANVSVVWEPA 372
           + + +   + +   PA
Sbjct: 378 KEIEKYYRIKISPVPA 393


>gi|258622745|ref|ZP_05717763.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
 gi|258584933|gb|EEW09664.1| ATP-dependent RNA helicase [Vibrio mimicus VM573]
          Length = 460

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRIIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALEALLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +    IG I + P  ++V V     
Sbjct: 402 DILGALTSDGELTAAQIGKINLFPMRSYVAVEMKIA 437


>gi|251789631|ref|YP_003004352.1| ATP-dependent RNA helicase DbpA [Dickeya zeae Ech1591]
 gi|247538252|gb|ACT06873.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 457

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 132/409 (32%), Positives = 208/409 (50%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALPAAQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L       +      +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHLD------AGRFNTQSLVLCPTRELADQVANELRRLARGMPNIKVLTLCGGVPFGL 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  H++V TPGRL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++   
Sbjct: 115 QRDSLTHAPHVIVATPGRLLDHLKKETVSLDDLRTLVLDEADRMLDMGFADAIDEVIAQV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   + L+FSAT   AI  +++  Q+D + + I + +   +       +   S + + + 
Sbjct: 175 PTPCQTLLFSATWPEAIAAISRRIQRDPLIIEIDTVDELPAVEQQFYEVS-RSGKLDLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+       + L      V+AL G++ Q++R   L    +G +R
Sbjct: 234 KLLSREQPASCVVFCNTKKDCQAVYEALTNSNQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     + + W P P+   I        L+  +   +I G +K  + 
Sbjct: 354 NALEEMLKMKLNWHPLPTGLRITP------LEAVMATLAIDGGKKAKMR 396



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +    + + +     
Sbjct: 311 EMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLKMKLNWHPLP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +  ++  G K K     ++  L    G++   IG I + P   +V V 
Sbjct: 371 TGLRITPLEAVMATLAIDGGKKAKMRPGDILGALTGDMGLDGADIGKIAIHPMHAYVAVK 430

Query: 515 ADGVDL----LRRTVKLDKGIQLKYL 536
                     L++     K ++++ L
Sbjct: 431 QAVARHAWKQLQQGKIKGKAVKVRLL 456


>gi|158284342|ref|XP_306246.4| Anopheles gambiae str. PEST AGAP012523-PA [Anopheles gambiae str.
           PEST]
 gi|157021090|gb|EAA02455.4| AGAP012523-PA [Anopheles gambiae str. PEST]
          Length = 720

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/377 (27%), Positives = 185/377 (49%), Gaps = 8/377 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +    + + +++ +  +   T +Q   +   L  +D++  A+TGSGKT AF   +
Sbjct: 202 VTSFAHFGFDESLMKSIRKSEFSTPTPIQAQAIPAALSGRDIIGIAKTGSGKTAAFLWPM 261

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ + +   P   P+ L +APTREL++Q+  E +       + +  C GG S   + 
Sbjct: 262 LVHIMDQRE-LGPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNISICCCYGGGSKWEQS 320

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ GA IVV TPGR+ D ++ K  N+  +  +VLDEAD+M ++GF   +  I +    
Sbjct: 321 KALEQGAEIVVATPGRMIDMVKIKATNLQRVTYLVLDEADKMFNMGFEPQVRSICNHIRP 380

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    +  LA++   D VR+        +SD+  R +L+         +  
Sbjct: 381 DRQTLLFSATFKKRVEKLARDVLTDPVRIIHGDLGEANSDVTQRIILLPTVQSKWNWLLT 440

Query: 239 LRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + ++F + +A        L      VV L G++ Q ER+  +   +     
Sbjct: 441 NLVKMLSEGSVLIFVTKKADAEETANNLRLKDNDVVLLHGDMDQSERNFVITRFKRKDVD 500

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  +I    +  +
Sbjct: 501 IMVATDVAARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITDKDKEFS 560

Query: 357 ERLFRE---ANVSVVWE 370
             L R    AN  V  +
Sbjct: 561 GHLVRNLEGANQDVPED 577


>gi|302873918|ref|YP_003842551.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307689833|ref|ZP_07632279.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302576775|gb|ADL50787.1| DEAD/DEAH box helicase domain protein [Clostridium cellulovorans
           743B]
          Length = 374

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 181/373 (48%), Gaps = 7/373 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  I + + + L + G    T VQ   +       D++  AQTG+GKT+AF L + 
Sbjct: 1   MNFKELGINEALVKILKDTGITEPTPVQSESIPHIKAGGDLIGEAQTGTGKTLAFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +          +   AL + PTRELA+Q+  +   L     + +    GG  +  + +
Sbjct: 61  ENISPT------VNNVQALILTPTRELAIQITNQALKLKEGKDINILAAYGGKDIGSQLK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N  H+++ TPGRL DHI  K +++S LK  VLDEAD+ML +GF++++E I+  + KK
Sbjct: 115 KLKNNIHLIIATPGRLLDHIERKTVDLSKLKTFVLDEADQMLLMGFKNEVESIIKVTSKK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L FSAT++  +  LA  Y  D + V I  E    S I    V      + NA+  +L
Sbjct: 175 RQTLCFSATLNSDVKKLAYRYMNDPITVTIKKEEVTLSTIKQHVVETTDRRKQNALCAVL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC T+         L +  +    L  ++ Q +R   ++  R+   +  I
Sbjct: 235 DEDNPFMAIIFCRTKRRADDLEVGLYQRGYNCAKLHSDIPQSKRERIMKAFRNADFQYLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  + + ++  + E+ +HR GRTGRAG +G +   I        E +
Sbjct: 295 ATDVAARGLDISGVTHIYNYDIPESVESYIHRIGRTGRAGEEGYTCLFIDPKNNDMLEEI 354

Query: 360 FREANVSVVWEPA 372
                  +     
Sbjct: 355 EEALKFQIPRRQV 367


>gi|221123619|ref|XP_002156523.1| PREDICTED: PL10-related protein CnPL10 [Hydra magnipapillata]
          Length = 628

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 194/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  N+ ++I   +S   Y   T VQ+  +     ++D++  AQTGSGKT AF + +
Sbjct: 170 IETFDEANLGEIILTNISLAHYTKPTPVQKNSIPIIKAKRDLMACAQTGSGKTAAFLVPI 229

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S +  E    +P++          P+AL +APTRELA Q+  E      ++ +   V  
Sbjct: 230 LSRIFEEGPFENPSNVRQGGKKKQYPIALVLAPTRELASQIYDESRKFVYRSCIRPCVVY 289

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  V  + RD+  G H++V TPGRL D I+   + +  +K +VLDEAD MLD+GF   I
Sbjct: 290 GGADVSTQMRDIDRGCHLLVATPGRLVDMIQRGKVGLECIKFLVLDEADRMLDMGFEPQI 349

Query: 170 ----EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
               E        +R+ LMFSAT    I  LA+++  + + + +        +I  + V 
Sbjct: 350 REIVEKCDMPRTGERQTLMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSENITQKVVW 409

Query: 226 VALSDRDNAIVNILRYHGAKN-AIVFCSTRASVS--RFTKVLAEHLFQVVALSGELSQQE 282
           V   D+   ++++L   G  +  +VF  T+                +   ++ G+  Q+E
Sbjct: 410 VEEHDKREFLLDLLNASGPDSLTLVFVETKRGADALEQFLFRCPENYHATSIHGDRHQKE 469

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   R G   + +AT VAARG+D+P+++ VI+ ++ S+ E  +HR GRTGR G  G
Sbjct: 470 REQALASFRVGTTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGHTG 529

Query: 343 MSVFVI---PQNMQRRAERLFREANVSVV 368
           ++        +N+ R    +  EA   + 
Sbjct: 530 LATSFFNDKNRNVARDLMDILAEAKQEIP 558


>gi|118582049|sp|Q0UWA6|DED1_PHANO RecName: Full=ATP-dependent RNA helicase DED1
          Length = 696

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 193/385 (50%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +   GY   T VQ+  +   +  +D++  AQTGSGKT  F   + + 
Sbjct: 203 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 262

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    P +            P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 263 AFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYG 322

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I 
Sbjct: 323 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 382

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I           R+ LMFSAT    I  LA+++ K+ + +++        +I  +   V
Sbjct: 383 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKIEYV 442

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +D+ + +++IL  HGA  +++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 443 EDADKRSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKA 502

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++  
Sbjct: 503 LEMFRSGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATA 562

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  V 
Sbjct: 563 FFNRGNRGVVRDLLDLLKEANQEVP 587


>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 453

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 181/364 (49%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I  AL        TS+QE  +   L+  D++ +AQTGSGKT AF L +   L  + 
Sbjct: 35  LDQEILSALDTLELTAPTSIQEQAIPEILQGHDLIATAQTGSGKTAAFCLPILQAL-KDG 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++  P +    L IAPTRELA+Q+   ++       +   V  GGV V  +R+ L+ G+ 
Sbjct: 94  EKAKP-NHVRCLIIAPTRELAIQLNANIKAFNEHLTLRHQVIFGGVRVLPQRKYLKRGSD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D  +   +    L  +VLDEAD +LDLGF  +++ I+ + PK+R+ L+FS
Sbjct: 153 ILVATPGRLLDLHQRGDILFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQTLLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +P I  LAK        V    +     +I+     V    +   ++ +L       
Sbjct: 213 ATFAPPIKKLAKKILNQPKDVTTIQKAAAKPNINQWLHPVDKKRKTELLLELLNRKPHAQ 272

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+ +     + L +      AL  + +Q ER +     ++    + +ATDVAAR
Sbjct: 273 VIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFKNNEISILVATDVAAR 332

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L LVI+ +L    E+ +HR GRTGRAG  G +  +   +       +       
Sbjct: 333 GIDIQNLPLVINYDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEFDALLDIEALTGKK 392

Query: 367 VVWE 370
           +  +
Sbjct: 393 ITRK 396


>gi|37681367|ref|NP_935976.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
 gi|39931700|sp|Q7MGP7|RHLB_VIBVY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|37200119|dbj|BAC95947.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus YJ016]
          Length = 435

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTH 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ G 
Sbjct: 76  AHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P  +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + + D+  ++QD
Sbjct: 376 EHTIP---------VSDYDSSALIQD 392


>gi|195438679|ref|XP_002067260.1| GK16276 [Drosophila willistoni]
 gi|194163345|gb|EDW78246.1| GK16276 [Drosophila willistoni]
          Length = 950

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 190/380 (50%), Gaps = 18/380 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  I + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 243 FEEASLPPHIIDEMKRQGFTKPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 302

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 303 IGNQPP-ILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 361

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 362 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 421

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   ++ +
Sbjct: 422 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMMRL 481

Query: 239 LRYHGAKN---------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           L+                I+F  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 482 LKEIVPTTNNAANNLNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 541

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 542 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 601

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 602 PDNAKQARELISVLEEAGQT 621


>gi|328948067|ref|YP_004365404.1| DEAD/DEAH box helicase [Treponema succinifaciens DSM 2489]
 gi|328448391|gb|AEB14107.1| DEAD/DEAH box helicase domain protein [Treponema succinifaciens DSM
           2489]
          Length = 534

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 202/371 (54%), Gaps = 7/371 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E ++ + + + +   GYV+ T VQE +L   L  +D+ V +QTG+GKT A+  ++ 
Sbjct: 1   MKFTEFSLHESLLQGIEGAGYVDCTPVQEQVLKSSLEGRDLYVQSQTGTGKTAAYLTSVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   +    ++   AL + PTRELAVQV  E + L   T +  A   GGV   ++  
Sbjct: 61  QELLTRGE----SAGKKALVMVPTRELAVQVQEEAQKLAKFTSLKCASFYGGVGYDKQVA 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP-- 177
            L+ G  I++GTPGR+ D   G  +++S +  +V+DEAD M D+GF  D+  ++   P  
Sbjct: 117 SLKKGVDIMIGTPGRVIDLNHGNQMDLSSVAFLVIDEADRMFDMGFYPDLRTLIKVLPSS 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ ++FSAT++  +  LA  Y ++   + IA+EN    +I      V+  D+   ++ 
Sbjct: 177 EQRQTMLFSATLNSYVKNLAWEYTRNPAEITIAAENITVDEIAQELFHVSSDDKMKLLLG 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+ +   ++ IVFC+T+ S     K L  + F+   + G+L Q++R   +   + G  + 
Sbjct: 237 IISHEKPESLIVFCNTKKSCEIVAKRLKMNGFESEFIIGDLPQKKRLTIMDKFKAGAIKC 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL +VI+ +L +  EN +HR GRT RAG+ G +     +       
Sbjct: 297 LVATDVAARGIDVNDLAMVINYDLPNEAENYVHRIGRTARAGKSGKAFTFCSEQDVYSLP 356

Query: 358 RLFREANVSVV 368
            + R    S+ 
Sbjct: 357 PIERYIEKSIP 367


>gi|195060349|ref|XP_001995786.1| GH17577 [Drosophila grimshawi]
 gi|193896572|gb|EDV95438.1| GH17577 [Drosophila grimshawi]
          Length = 1302

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 187/365 (51%), Gaps = 5/365 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 585 MDVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPTLED 643

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 644 GDGAIAIIMAPTRELCMQIGKDIRRFSRSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 703

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 704 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 763

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+   K  V V +   +    D++   V++    +   ++ +L  +    +I
Sbjct: 764 FPRQMEALARRILKKPVEVIVGGRSVVCKDVEQHVVILNDEAKFFKLLELLGIYQETGSI 823

Query: 249 V-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           + F   + +     + L    +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 824 IVFVDKQENADILLRDLMRASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 883

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG KG +   I     R A  + R  ++S 
Sbjct: 884 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGNKGCAFTFITPEQARYAGDVIRAFDLSG 943

Query: 368 VWEPA 372
              P 
Sbjct: 944 TLIPP 948


>gi|149178000|ref|ZP_01856597.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
 gi|148843193|gb|EDL57559.1| ATP-dependent RNA helicase [Planctomyces maris DSM 8797]
          Length = 418

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 201/393 (51%), Gaps = 8/393 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + LS+ GY   + +Q  ++   +  +D +  A+TG+GKT AF L +   L    
Sbjct: 22  LNEKILKDLSKAGYETPSPIQSELIPIAVTGQDCIGQARTGTGKTAAFSLPVLQQLDLRR 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTREL+ QV  E+  L     + +AV +GG  V  +   L+ GA 
Sbjct: 82  P------GMQALILAPTRELSEQVAAEIRKLCTSKSLSIAVLVGGKPVRPQENQLKKGAQ 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I VGTPGR+ DHI    L +  L  VVLDEAD MLD+GFR DIE IL   P+KR+ L+ S
Sbjct: 136 IAVGTPGRVIDHINRGNLQLGTLGFVVLDEADRMLDIGFRPDIEKILRKCPEKRQTLLLS 195

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P +  LA  Y ++ V ++++ +      ID   + V    +   +  +L     K 
Sbjct: 196 ATLPPPVERLANRYMQNPVMIDLSEDKVSVDAIDQYYITVDPDRKIKLLSRLLFQERPKQ 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+    +  ++ ++ L +V A+ G+L Q +R   L+  R+G+ R+ IATDV  R
Sbjct: 256 TIVFTRTKRGADKLDRIFSKKLKEVAAIHGDLPQPKRDRVLKKFREGKIRLLIATDVMGR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+  +  +I+ ++    ++ +HR GR GR  + +KG +   +  +   +   +    N
Sbjct: 316 GIDVSGISHIINFDIPEFSDDYVHRIGRVGRLSSDQKGAAFTFVAPDEGEQLTNIENRIN 375

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             V        EA + +  ++ ++    L S +
Sbjct: 376 HMVKEFRVDEFEAYKPQKPRKKIEKVSHLGSTE 408


>gi|330790576|ref|XP_003283372.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
 gi|325086637|gb|EGC40023.1| hypothetical protein DICPUDRAFT_6001 [Dictyostelium purpureum]
          Length = 462

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 171/380 (45%), Gaps = 14/380 (3%)

Query: 1   MKIFENIP-------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVA 53
           +K FE++        + + + + E GY   + +Q   +   L+E+DV+  A TGSGKT A
Sbjct: 45  IKSFEDLDDSKFKVRKYLIKNIQENGYKEPSPIQMQTIPILLKERDVVAIAPTGSGKTAA 104

Query: 54  FGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           F + + S L     R        ++ IAPTRELA Q+ R    L       + V    + 
Sbjct: 105 FSIPILSAL-----REPKKEGFRSVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLH 159

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
                  L     I++ TP RL   I+   L +++++ +V DEAD++ D  F + I+ ++
Sbjct: 160 NQSTDESLIKNYDILITTPLRLVYLIKENVLKLNNVEYLVFDEADKLFDRDFVEQIDDVV 219

Query: 174 DSSPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDR 231
            +   ++  +  FSAT++  +  LA +  K+ +++ I  EN     +D +   +     +
Sbjct: 220 TACQNQKLKICLFSATMNTLVEELANSIMKNPIKITIGEENAAAVTVDQKLIYVGREEGK 279

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
             A+  +++       ++F  ++       + L      V  +  E +Q +R   ++  R
Sbjct: 280 LMAVRQLIQKGLEPPILIFTQSKERAHDLFQELVFDGINVDVIHSERTQFQRDTIVKKFR 339

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V I T++ ARG+D   +  VI+ +      + +HR GRTGRA R G++  +    
Sbjct: 340 TGKIWVLICTELMARGMDFKGVNYVINFDFPQTLASYVHRIGRTGRANRPGVAYTLYTDA 399

Query: 352 MQRRAERLFREANVSVVWEP 371
            +     +      S    P
Sbjct: 400 DKPMLPTIVHAMKKSGSEVP 419


>gi|302765659|ref|XP_002966250.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
 gi|302801131|ref|XP_002982322.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300149914|gb|EFJ16567.1| hypothetical protein SELMODRAFT_116103 [Selaginella moellendorffii]
 gi|300165670|gb|EFJ32277.1| hypothetical protein SELMODRAFT_85554 [Selaginella moellendorffii]
          Length = 411

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 38  ETFDSMGLHENLLRGIYAYGFEKPSTIQQRGIVPFCKGIDVIQQAQSGTGKTATFCSGIL 97

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N          AL +APTRELA Q+ + +  L     V V  C+GG  V +++R
Sbjct: 98  QQLDYNN------VECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTDVRQDQR 151

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K
Sbjct: 152 ILQAGVHVVVGTPGRVYDMLRRRALRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSK 211

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 212 VQVGLFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDL 271

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 272 YETLAITQSVIFCNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 331

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + +  +R    
Sbjct: 332 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFMVREDERMLHD 391

Query: 359 LFREANVSVVWEP 371
           + +  N  +   P
Sbjct: 392 IQKFYNTVIEELP 404


>gi|195478796|ref|XP_002100656.1| GE17181 [Drosophila yakuba]
 gi|194188180|gb|EDX01764.1| GE17181 [Drosophila yakuba]
          Length = 1215

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/473 (25%), Positives = 221/473 (46%), Gaps = 11/473 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 514 MDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLED 572

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 573 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 632

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 633 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 692

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 693 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSI 752

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 753 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 812

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 813 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSG 872

Query: 368 VWEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              PA         +A++E + + +     F       +++  + +      +K A G  
Sbjct: 873 TLIPAELQTLWTEYKALQEAEGKTVHTGGGFSGKGFKFDEQEFNAVKESKKLQKAALGLA 932

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
                     +    +  +    R   D+ A      +      ++  ++S G
Sbjct: 933 DSDDEEDIEQDIDQQIEQIFAAKRTVKDTSAAATAAAAAAAAAAAAAAAVSGG 985


>gi|71800669|gb|AAZ41384.1| Ded1-like DEAD-box RNA helicase [Chironomus tentans]
          Length = 776

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/394 (29%), Positives = 195/394 (49%), Gaps = 26/394 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++I   ++I   +    Y   T VQ+  +   L  +D++  AQTGSGKT AF + +
Sbjct: 266 ITSFDDIKLTEIIRTNIKMARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPI 325

Query: 59  ASTLLAENDRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +L +    +PAS          PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 326 LNRMLEQGASMNPASNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLY 385

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +L+ +VLDEAD MLD+GF   I
Sbjct: 386 GGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRFLVLDEADRMLDMGFEPQI 445

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I+++            MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 446 RHIIENRDMPPTGQRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILW 505

Query: 226 VALSDRDNAIVN--------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           V  +++ + +++           Y      ++F  T+       + L ++   V ++ G+
Sbjct: 506 VNENEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGD 565

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ+ER +AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR
Sbjct: 566 RSQREREDALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTGR 625

Query: 338 AGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G  G++     +   N+      L  E N  + 
Sbjct: 626 MGNLGIATSFFNEKNRNIVSDLVELLIETNQELP 659


>gi|84997461|ref|XP_953452.1| DEAD-box family ATP-dependent helicase [Theileria annulata strain
           Ankara]
 gi|65304448|emb|CAI76827.1| DEAD-box family ATP-dependent helicase, putative [Theileria
           annulata]
          Length = 535

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/456 (25%), Positives = 212/456 (46%), Gaps = 13/456 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE I + I +AL+E  ++  T +Q   + P L+ KDVL  A+TGSGKT+AF + +A 
Sbjct: 72  FSDFE-ISEPILKALTENNFIKTTEIQAKCIPPLLQGKDVLGKAKTGSGKTLAFLIPMAE 130

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +F P +    L I+PTREL++Q+    + +       + + +GG +  +E   
Sbjct: 131 VLY--QVKFMPRNGTGGLIISPTRELSLQIFEVGKEICKYLPQTLGLVMGGANRKQEEFK 188

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +I++ TPGRL DH++        +L   V+DEAD +L +GF  ++  I+   PK 
Sbjct: 189 LVKGVNILIATPGRLLDHMQNTKGFVYKNLMVFVIDEADRILQIGFEQEMNQIIKLLPKN 248

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNI 238
           R+  +FSAT +  +  LA+   K  + + ++          +   V+    +R   +   
Sbjct: 249 RQTSLFSATHTSNVDDLARLSLKSPIFLQVSGMENATVSGLEQGYVVCEAENRFMLLYTF 308

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +  K  +VF S+  SV    ++L      V  + G+  Q  R               
Sbjct: 309 LKKNLDKKIMVFFSSCNSVKFHDELLNYVDIPVKCIHGKKKQTNRLTTYYSFCKATKGHL 368

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAE 357
           + TDVAARG+D+P ++ ++  +   +P++ +HR GRT R A  KG ++  +         
Sbjct: 369 LCTDVAARGLDIPKVDWIVQYDPPDDPKDYIHRVGRTARGAEGKGKAILFLMPEELGFLH 428

Query: 358 RLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            L +  NV++  ++   S  A  +   +++++    L+    +  +        H  + I
Sbjct: 429 YL-KSLNVTINKYDFNLSKIANVQIHLEKLIEKNYHLNRSSKEAYRSYLHAYMSHSLKDI 487

Query: 417 ----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFR 447
               +    R+ ++ G   P ++   +  S R + R
Sbjct: 488 FNVHSLDLKRVAKSFGFSTPPKVDLNTKPSNRTKSR 523


>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 764

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 213 VKNFEDCGFPVPLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 272

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 273 IVHIM-DQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLQVAAVYGGVSKFEQF 331

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 332 KELKSGCEIVVATPGRLIDLLKMKALRMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 391

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 392 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLE 451

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF + +A V      L +H F+V AL G+  Q  R   LQ  + G   
Sbjct: 452 KMPGMIDDGDVLVFATKKARVDEVENQLNQHGFKVAALHGDKDQASRMETLQKFKSGIYH 511

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 512 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKESRF 571

Query: 356 AERL---FREANVSVVWE 370
           A  L      A   V  E
Sbjct: 572 AGELVHSLIAAGQDVPNE 589


>gi|331269837|ref|YP_004396329.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           botulinum BKT015925]
 gi|329126387|gb|AEB76332.1| DEAD/DEAH box helicase domain protein [Clostridium botulinum
           BKT015925]
          Length = 370

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 190/370 (51%), Gaps = 7/370 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  I + I + L  +G    T +QE  +     E DV+  AQTG+GKT AF L + 
Sbjct: 1   MNFKELGISEDIIKVLKSQGVTTPTPIQEKSIKLVKEENDVIAEAQTGTGKTFAFLLPMF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +          +    L + PTRELA+Q+  E   L     + +    GG  +  + +
Sbjct: 61  ENMSPN------INTVQGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   H+V+ TPGRL DHI+   +N+  LK +VLDEAD+ML +GF++++E I+  + KK
Sbjct: 115 KLKGNIHLVIATPGRLLDHIKRNTINLQKLKTIVLDEADQMLYMGFKNEVEEIMKHTSKK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++L FSAT++  +  LA  Y K+   V+I SE     +I    V      + +A+  +L
Sbjct: 175 KQILCFSATMNSQVKKLAYRYMKEPKIVSIQSEEVTLKNIKQAVVETTDRRKQDALCKVL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AI+FC T+  V      L E  +    + G+L+Q +R   ++  +    +  I
Sbjct: 235 DEDNPFMAIIFCRTKRRVDNLEDALHERGYNCKKIHGDLNQAKRERVMKEFKKMDIQYLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG +G +   I    +R  + +
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENAESYIHRIGRTGRAGEEGETCLFIDPKDKRTLDII 354

Query: 360 FREANVSVVW 369
            +E  V++  
Sbjct: 355 EKEIKVTIPR 364


>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
 gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
          Length = 946

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L    
Sbjct: 239 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 298

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRER 118
            +  +         P+AL +APTRELA Q+   +                 GG S   + 
Sbjct: 299 HIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 477

Query: 238 ILRYHGA--------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +L                IVF  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 478 LLNEISPIKKSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 537

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 598 PDNAKQARELISVLEEAGQT 617


>gi|281343550|gb|EFB19134.1| hypothetical protein PANDA_000569 [Ailuropoda melanoleuca]
          Length = 457

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/449 (26%), Positives = 198/449 (44%), Gaps = 25/449 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKH 411
           +  +    +     E A  ++ + + +  R  +  + L++   DEKK ++      L   
Sbjct: 363 IEEQIKKKLEELSVEEAKVLQILTQVNVVR-RECEIKLEAANFDEKKEINKRKQLILEGK 421

Query: 412 DPEKIA---AGFLRIHRAGLCAPEEITPV 437
           DP+  A   A   +I +      E++  V
Sbjct: 422 DPDLEAKRKAELAKIKQKNRRFKEKVERV 450


>gi|238918068|ref|YP_002931582.1| ATP-dependent RNA helicase RhlB [Edwardsiella ictaluri 93-146]
 gi|238867636|gb|ACR67347.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 424

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 11  LHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 70

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ R L+ G 
Sbjct: 71  AIAERKTNQPRALIMAPTRELAVQIHSDAEPLAQETGLRLGLAYGGDGYDKQLRVLEQGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 131 DILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPTAQRLNM 190

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L    
Sbjct: 191 LFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEW 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 251 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILEDFTKGHIDILVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 311 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLNLPAIESYI 370

Query: 364 NVSVV 368
             S+ 
Sbjct: 371 GHSIP 375


>gi|145491907|ref|XP_001431952.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399059|emb|CAK64554.1| unnamed protein product [Paramecium tetraurelia]
          Length = 408

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 174/370 (47%), Gaps = 10/370 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++ Q + + L+   Y   + +QE  +   L   +++  A+ G+GKT A+ + +   
Sbjct: 39  FEEFDLKQELMQGLAASNYEKPSPIQEESIPFALAGSNIIARAKNGTGKTGAYIIPILEM 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E           +L + PTRELA+QV   ++ +     V   V  GG     +   L
Sbjct: 99  LEVEGQ-------IQSLILVPTRELALQVSSLVKEIGKYMKVECMVSTGGTDFKEDIYRL 151

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H++VGTPGR+ D  + K  ++S LK  VLDEAD++L + F+  I  IL  +P + +
Sbjct: 152 KQVVHVLVGTPGRILDLAQRKLADLSKLKHFVLDEADKLLSVDFQPLIVKILQFAPPEVQ 211

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT    +      +      +N+  E           + +    + N +  I   
Sbjct: 212 IMMFSATFPVDVKGFINEHVPQIQEINLMEELTLKGV-TQYYLFIDEKQKVNCLNFIFSK 270

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V   T+ + E  +    +  +++Q++R+      R    R  ++T
Sbjct: 271 LEINQAIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRKAVGRCLVST 330

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V  I +  +    ++ +
Sbjct: 331 DLFTRGIDIQSVNVVINFDFPRTAETYLHRIGRSGRFGHLGLAVNFITETDKDTLVQIEQ 390

Query: 362 EANVSVVWEP 371
           E +  +   P
Sbjct: 391 ELDTDIKPFP 400


>gi|121706879|ref|XP_001271659.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
 gi|134034088|sp|A1CH78|DED1_ASPCL RecName: Full=ATP-dependent RNA helicase ded1
 gi|119399807|gb|EAW10233.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 681

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/388 (30%), Positives = 191/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 191 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 250

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
              +     PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 251 AFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 310

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++  +VLDEAD MLD+GF   
Sbjct: 311 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNINYLVLDEADRMLDMGFEPQ 370

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I       S  +R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 371 IRRIVEGEDMPSVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 430

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 431 YVEDVDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQRER 490

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R  R  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 491 ERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 550

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 551 ATAFFNRGNRGVVRELIDLLKEAHQEVP 578


>gi|332849248|ref|XP_511724.3| PREDICTED: eukaryotic initiation factor 4A-III [Pan troglodytes]
          Length = 411

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 199/379 (52%), Gaps = 9/379 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 273 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIINYDLPNNRELSIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPAPSVEAI 378
            +  +  +   P    + I
Sbjct: 393 EQYYSTQIDEMPMNVADLI 411


>gi|304409763|ref|ZP_07391383.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304119|ref|ZP_07583872.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304352281|gb|EFM16679.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913017|gb|EFN43440.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 451

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 190/396 (47%), Gaps = 6/396 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  K
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHK 178

Query: 180 RRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR  +  +                +  A     A+ +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLA 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 VLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +++      +      P +EA       +  Q P  
Sbjct: 359 KKVQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAK 394


>gi|146197837|dbj|BAF57631.1| DEAD box polypeptide 48 protein [Dugesia japonica]
          Length = 376

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 181/375 (48%), Gaps = 7/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   +   G+   +++Q   +   ++ +DV+  AQ+G+GKT    ++        
Sbjct: 8   SLKEDLLRGIYAYGFEKPSAIQARTIKQIVKGRDVIAQAQSGTGKTSLIAISSLQLTDIN 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       L ++PTRELA Q  + +  L     V    CIGG S+ ++ + L  G 
Sbjct: 68  ------LRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQ 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D ++ + L    +  +VLDEADEMLD GF++ I  I    P   ++++ 
Sbjct: 122 HIVSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILI 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  + +R+ +  +      I      +     + + + +I      
Sbjct: 182 SATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDIYDTVTV 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++FC+T+  V   T  + E+ F V ++ G++ Q ER    +  R    RV I TDV 
Sbjct: 242 TQVVIFCNTKRKVEWLTDKMRENNFTVSSIHGDMPQGERDEITRQFRALETRVLITTDVW 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +   
Sbjct: 302 ARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQFYA 361

Query: 365 VSVVWEPAPSVEAIR 379
             +   P    E ++
Sbjct: 362 TQIDEMPMNMAELVK 376


>gi|126173892|ref|YP_001050041.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125997097|gb|ABN61172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 451

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 190/396 (47%), Gaps = 6/396 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  K
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHK 178

Query: 180 RRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR  +  +                +  A     A+ +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLA 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  I+F +TR    R    L E  F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLKDETHKQVIIFTATRPDTERLAAKLIEQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 VLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +++      +      P +EA       +  Q P  
Sbjct: 359 KKVQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAK 394


>gi|311032981|ref|ZP_07711071.1| putative ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 375

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 195/371 (52%), Gaps = 9/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + +  +L   G    T +QE  +   L   DV+  AQTG+GKT+AF L +
Sbjct: 1   MTDFLKLGIRKGVNHSLKSMGINAPTPIQERTIPAVLEGHDVIAQAQTGTGKTLAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +   N          AL + PTRELA Q+ +E++ L      +  +   GG  V+ +
Sbjct: 61  LEKVDVNNPE------TQALILTPTRELAHQITKEIKNLKENIDDLQVLAVYGGQDVNSQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+   H++V TPGRL DH+R   +++S +  +V+DEAD+ML +GF  DI+ I     
Sbjct: 115 LKKLKGAQHVIVATPGRLLDHVRRGTIDLSTISMLVIDEADQMLLMGFLPDIDTITAEIF 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ ++FSATI   I  LAK Y K    + IA +    + I++ AV      ++  +++
Sbjct: 175 ASRQTMLFSATIPNEIHALAKKYMKQPKHIQIAEKQVTVASINHYAVETTDRRKEGTMLH 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H    AI+FC T+A V + T+VL     +  AL G++ Q +R+ A++  R+ + + 
Sbjct: 235 LIKEHNPYLAIIFCRTKARVQKLTEVLKHEGVECEALHGDIPQSKRNRAMKWFREAKLQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  V + ++  + E  +HR+GRTGRA   G +  +         +
Sbjct: 295 LVATDVAARGLDVEGVTHVYNYDIPQDLETYIHRTGRTGRASGSGEAYTLFAPRDVDFLQ 354

Query: 358 RLFREANVSVV 368
            + +   + + 
Sbjct: 355 MIEKGIEMPLE 365


>gi|242399022|ref|YP_002994446.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
 gi|242265415|gb|ACS90097.1| ATP-dependent RNA helicase, DEAD-family [Thermococcus sibiricus MM
           739]
          Length = 382

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 201/387 (51%), Gaps = 10/387 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FE   + +    A+  +G+   T +Q+ ++   LR   D++  +QTG+GKT AF L L 
Sbjct: 2   SFEKLGLSENSLNAVRRKGFEKPTDIQKEVIPRLLRGDNDIIGQSQTGTGKTAAFALPLI 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  E           A+ I PTRELA+QV  E+  L  K  + V    GG  +  + R
Sbjct: 62  ELIDEEIKEV------QAIVITPTRELAIQVADEIRSLRGKRRINVLPVYGGQPIGPQIR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L+ G HIVVGTPGR+ DHI    L++  +   +LDEAD MLD+GF +DIE IL  + ++
Sbjct: 116 NLRRGVHIVVGTPGRVIDHIERGTLSLDGVSYFILDEADRMLDMGFIEDIERILRHTSEE 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+LMFSATI   I  LA+ Y KD   + I   +     ++         ++  +++  +
Sbjct: 176 KRVLMFSATIPREILRLARRYLKDYEVIRIQDRSLAPELVEQIY-FEVRPNKRFSLLCSI 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC T+         L    + V AL+G++ Q+ R   L+  R G+ RV +
Sbjct: 235 LDEKDFYGIVFCQTKRETRELASKLKTKGYSVEALNGDIPQKGRERILERFRKGKIRVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ DL  VI+  +  NPE  +HR GRTGR G++G ++  +      +   +
Sbjct: 295 ATDVAARGIDVKDLTHVINYSIPQNPEAYVHRIGRTGREGKRGKAITFVAPWESPKLRDI 354

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386
            R A V +     P+    R+RD   +
Sbjct: 355 ERVARVKIKEMAYPTEYGRRKRDIPMV 381


>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
 gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
          Length = 1472

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/359 (25%), Positives = 166/359 (46%), Gaps = 4/359 (1%)

Query: 1    MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            +K FE+  +  ++ E + + GY   T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 1056 IKKFEDAGLRTIVTENVIKSGYKVPTPIQKVSIPVINEGRDMMACAQTGSGKTAAFLLPI 1115

Query: 59   ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             S LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG S   + 
Sbjct: 1116 LSKLLEDPQDLEIGK-PQAVVVSPTRELAIQIFNEARKFGFESYLKISIVYGGTSFKHQN 1174

Query: 119  RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +  G H+++ TPGRL D +    +  +  + VVLDEAD MLD+GF + +  I+     
Sbjct: 1175 ECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADRMLDMGFSESMRKIMTHRTM 1234

Query: 179  KRRMLMFSATISPAITTLAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +        + +          +  +                  + +         + + 
Sbjct: 1235 RSEHQTLMFSATFPEEIQRLAGEFLNNYVFVTIGVVGGACSDVQQTIYEVNKFNKRSKLM 1294

Query: 238  ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +    A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  + G+ +V
Sbjct: 1295 EILREDANGTIVFVETKRGADFLASFLSETEFPTTSIHGDRLQSQREQALRDFKTGKMKV 1354

Query: 298  CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IAT VAARG+D+ +++ V++ ++ +N  + +HR GRTGR G  G +      +  R  
Sbjct: 1355 LIATSVAARGLDIKNVKHVVNFDMPNNIADYVHRIGRTGRVGNNGRATSFFDVDQDRSL 1413


>gi|300692069|ref|YP_003753064.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
 gi|299079129|emb|CBJ51797.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum PSI07]
          Length = 614

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 230/508 (45%), Gaps = 31/508 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L   D+LV++QTGSGKT AF L     +  + 
Sbjct: 37  LDERIVRALGEVNYTQPTPVQAQAIPACLSGSDLLVTSQTGSGKTAAFMLPAIQRISEQP 96

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P +                  P  L + PTRELA+QV             +  A  
Sbjct: 97  EPQRPRADGPPQRVKGRRPRPSPAKPSLLVLTPTRELALQVTTAASQYGRHLRRIVCASI 156

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           IE I+ ++P  R+MLMFSAT+   I  LA+   +D  R+ IA+     S+I+ R      
Sbjct: 217 IEAIVGATPATRQMLMFSATMDRRIEQLAERMMRDPQRIEIAAAKIDQSNIEERLHFTDD 276

Query: 229 -SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 277 LSHKQQLLDHLLRDATLKQAIVFTATKRDADSLAERLTETGFSAGALHGDMHQGARNRTL 336

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 337 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +      +  R+ R  +  +    A  VE +  + + +           +G  +      
Sbjct: 397 VNHGDTFQWRRIERFVDRRI---DATVVEGLEPKRSPKPRSGGPRAGGDRGGYRGNGGGN 453

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF--RDDSRAFKVGGGSRDNFKG 465
                 ++        +       E     S    R+ F  R D R  + GGG +   + 
Sbjct: 454 GGNWRGQRDGYAARTGNGGNGGNSEGRFQRSFGGDREGFAPRRDDRGDRNGGGYQGGQRD 513

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSG 493
                   G++  A  R       R+  
Sbjct: 514 -------WGNRDNAAPRQSYGQQTRTGD 534


>gi|291447570|ref|ZP_06586960.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350517|gb|EFE77421.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 458

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 191/384 (49%), Gaps = 14/384 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P+   EAL   G  +   +QE  L   L   DV+  A+TG+GKT+ FGL 
Sbjct: 1   MTTFRDLGIFPET-AEALEAVGITSPFPIQELTLPVALSGSDVIGQAKTGTGKTLGFGLP 59

Query: 58  LASTL----LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           L   +      E  R  P     AP AL + PTREL  QV  +L        V V    G
Sbjct: 60  LLERVTVPADVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYG 119

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   +   L+ G  ++VGTPGRL D    + L++SH++ +VLDEADEMLDLGF  D+E
Sbjct: 120 GRAYEPQVEALKKGVDVIVGTPGRLLDLAGQRKLDLSHIRGLVLDEADEMLDLGFLPDVE 179

Query: 171 FILDSSPKKRRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            I+   P KR+ ++FSAT+     ++     +        +   E     +         
Sbjct: 180 RIITMLPAKRQTMLFSATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTVQHVYRAH 239

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  IL+  G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL
Sbjct: 240 NMDKPEMLARILQADGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQAL 299

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R+G+  V + TDVAARGID+  +  V++ +   + +  LHR GRTGRAG KG+++ +
Sbjct: 300 RAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEDEKTYLHRIGRTGRAGAKGVAITL 359

Query: 348 IPQNMQRRAERLFREANVSVVWEP 371
           +  +   R + + +  ++     P
Sbjct: 360 VDWDDIPRWQLINKALDLKFPDPP 383


>gi|145349088|ref|XP_001418972.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579202|gb|ABO97265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 413

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 189/380 (49%), Gaps = 9/380 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  N+ + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 40  ETFDTMNLQENLLRGIYAYGFEKPSAIQQRGIVPFSKGFDVIQQAQSGTGKTATFCAGIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +L              AL +APTRELA Q+ + +  L     V    C+GG SV  + R
Sbjct: 100 QSLDYS------VHECQALVLAPTRELAQQIEKVMRALGDYLQVKCHACVGGTSVREDTR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H++VGTPGR+ D +R + L    +K   LDEADEML  GF+D I  I    P K
Sbjct: 154 ILQAGVHVIVGTPGRVYDMLRRRALKSDSIKIFALDEADEMLSRGFKDQIYDIFTLLPPK 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    VR+ +  +      I      +     + + + ++
Sbjct: 214 VQVGVFSATLPPEALEITRKFMTKPVRILVKRDELTLEGIKQFYVNVDKEQWKLDTLCDL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +    F V A  G++ Q  R   ++  R G +RV 
Sbjct: 274 YETLAITQSVIFANTRRKVDWLTDNMRARDFTVSATHGDMDQNTRDVIMREFRSGSSRVL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+S+  +    +R  + 
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTAEDERLLQD 393

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + R     +   P+   + I
Sbjct: 394 IQRFYQTVIEELPSNVADLI 413


>gi|153801095|ref|ZP_01955681.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
 gi|124123328|gb|EAY42071.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-3]
          Length = 460

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 214/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++   +A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPTSIEQIAQSVTHNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA 437


>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 556

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/398 (33%), Positives = 197/398 (49%), Gaps = 24/398 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   I  AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 42  LSAEIVSALTAAGYKSPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 101

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVA 106
                               R  P + P  L + PTRELA+QV                 
Sbjct: 102 KVQASQPREPRDNNAGGRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTV 161

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF 
Sbjct: 162 SILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADRMLDMGFI 221

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL- 225
           DDI+ I+ ++P  R+ ++FSAT+   I +L     K+  R+ I     Q ++I       
Sbjct: 222 DDIDTIVAATPASRQTMLFSATLDGKIGSLTGRLLKEPERIEIKQHIEQRTNIAQTVHYV 281

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                +D  + ++LR  G   AIVF +T++        LA+  F+  AL G+L Q  R+ 
Sbjct: 282 DDRDHKDRLLDHLLRDSGLDQAIVFTATKSDADMLAGRLADAGFESAALHGDLPQGARNR 341

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V
Sbjct: 342 TIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAV 401

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
            ++    Q   +R+ R     +   P   VE    R A
Sbjct: 402 SLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRRA 436


>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 575

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 193/383 (50%), Gaps = 9/383 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P  + I +A ++ G+   TS+Q       L+ KD++  A+TGSGKT  F L +   
Sbjct: 140 FKDAPFQERIQQAFAQAGFARPTSIQGQAWPIALQNKDMICVAKTGSGKTCGFLLPVFHQ 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L +  R    + P+ L +APTREL+VQ+  E +      G+    C GG S H +   L
Sbjct: 200 HLVKQTRIQGFTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIAAL 259

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q G   V+ TPGRL D I  +  ++S ++ +VLDEAD MLD+GF   I  I+ + P + R
Sbjct: 260 QRGVECVIATPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENR 319

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNI 238
             +  +   P       +            E      + DI    V+ + S++ + +  I
Sbjct: 320 QTLLFSATWPKEIQALAHDFLKNPIQINVGEVNALVANKDIQQTIVMCSESEKLDKLEQI 379

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR       IVF + + S +     L E  F V +L G+  Q ER+  +Q  + G+ RV 
Sbjct: 380 LRDLMHGKIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVL 439

Query: 299 IATDVAARGIDLPDLELVIHAELS---SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           IATDVAARG+D+ D+ +V++ ++    +  E+ +HR GRTGRAG KG +     Q  ++ 
Sbjct: 440 IATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDRKN 499

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
           A +L +        E  P ++A+
Sbjct: 500 ATQLVQVL-TKAQQEIPPELQAM 521


>gi|71082870|ref|YP_265589.1| ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71061983|gb|AAZ20986.1| probable ATP-dependent RNA helicase [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 582

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 225/470 (47%), Gaps = 16/470 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +     +  +L +  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L
Sbjct: 1   MENFKLLKIEDSLKNSLEKMKFTKPTPIQAMAIPVALEGKDILGTAQTGTGKTLAFSIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRE 117
            + L+ + + F       AL + PTRELA QV   ++ +   K  +  A+ IGG ++ ++
Sbjct: 61  INKLILDKNAF-------ALVMCPTRELATQVMAAIKSIISDKINIKTALLIGGEAMQKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L N + I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE IL   P
Sbjct: 114 LRQLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIELILKFVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   I  +++ Y  +  R++  S +   + I    + V   ++ + +V+
Sbjct: 174 KDHQTLLFSATLPQNIVRISERYLNEPQRISTGSTSVPIAKIKQETLQVFKENKYDQLVD 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+    +  K L E      A+ G+L Q +R   +   R G  R+
Sbjct: 234 QFIARKGS-ILVFVKTKRGADKMVKRLKEEGHSADAIHGDLRQSKRDRVITSFRKGLKRI 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++  +  + +    
Sbjct: 293 LIATDVAARGLDIPLIQHVINFDLPQVPEDYVHRIGRTARAGTEGSALTFLTPDDRSMWN 352

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +   +   ++PAP       R  +R  + P        DEKK               
Sbjct: 353 EISKL--IDPNFKPAPRGARGDSRGGKR-GKAPYNKKRKFRDEKKSFGKGRPDRSSRD-- 407

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                    G  +  + +  S     DR   D      G   + +F   S
Sbjct: 408 GEKKSFGYKGKSSFGDKSKPSSYGRPDRSSRDGEKKSFGYKGKSSFGDKS 457


>gi|24644481|ref|NP_731031.1| Rm62, isoform D [Drosophila melanogaster]
 gi|281361218|ref|NP_001163528.1| Rm62, isoform H [Drosophila melanogaster]
 gi|23175946|gb|AAN14331.1| Rm62, isoform D [Drosophila melanogaster]
 gi|51092049|gb|AAT94438.1| RE56857p [Drosophila melanogaster]
 gi|272476832|gb|ACZ94826.1| Rm62, isoform H [Drosophila melanogaster]
          Length = 575

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 143 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 202

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 203 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 261

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 262 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 321

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 322 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 381

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 382 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 441

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 442 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 501

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 502 VDVLREANQEI 512


>gi|212275354|ref|NP_001130628.1| hypothetical protein LOC100191727 [Zea mays]
 gi|194689682|gb|ACF78925.1| unknown [Zea mays]
          Length = 614

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 195/383 (50%), Gaps = 25/383 (6%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   ++  GY + T VQ   +   +  +D++  AQTGSGKT AF L + S 
Sbjct: 82  FEAAGLAEAVLRNVARCGYESPTPVQRYAMPIVMAGRDLMACAQTGSGKTAAFCLPVVSG 141

Query: 62  LL-----------AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           L+            +   F   +A P AL +APTRELA Q+  E +    +TG+ V V  
Sbjct: 142 LVAPAGGGNGHGPRDRGSFDRVAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAY 201

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + RDL+ G  ++V TPGRL D +    +++  +K +V+DEAD ML++GF   I
Sbjct: 202 GGTPMFSQLRDLEKGVDLLVATPGRLVDLVERSRISLEAIKYLVMDEADRMLNMGFEPQI 261

Query: 170 EFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I+D         R+ ++FSAT  P I  LA ++  + + V +         ID +   
Sbjct: 262 RKIVDMMNMPKKSVRQTMLFSATFPPEIQRLATDFLHNYIFVTVGRVGSSTDLIDQKIEF 321

Query: 226 VALSDRDNAIVNILRYH-------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   ++   +++IL+              +VF  T+         L  + F   ++ G+ 
Sbjct: 322 VNGGEKRGFLLDILQKQSVGLSKNKQPLTLVFVETKREADSLQYCLQSNGFSATSIHGDR 381

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +QQER  AL+  + G   + +ATDVA+RG+D+P++  VI+ +L  + ++ +HR GRTGRA
Sbjct: 382 TQQERERALKSFKSGATPILVATDVASRGLDVPNVAHVINYDLPKSIDDYVHRIGRTGRA 441

Query: 339 GRKGMSVFVIPQNMQRRAERLFR 361
           G+ G +  +  ++    A+ L  
Sbjct: 442 GKAGKATALFTESNHHLAKDLLE 464


>gi|195048170|ref|XP_001992482.1| GH24775 [Drosophila grimshawi]
 gi|193893323|gb|EDV92189.1| GH24775 [Drosophila grimshawi]
          Length = 977

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 192/383 (50%), Gaps = 17/383 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 241 FEESSLPTHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 300

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 301 IGNQPP-IMRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQVR 359

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 360 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 419

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R+++M+SAT    +  LA ++  D +++NI S N   + +I     +   +++   ++ +
Sbjct: 420 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICNENEKPQRMMRL 479

Query: 239 LRYHGA--------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L+               I+F  T+  V    +++    +   ++ G+ SQ ER + L+  
Sbjct: 480 LKEITPSNNAANAGNKIIIFVETKIKVEDILQIIRNEGYTATSIHGDKSQSERDSVLRDF 539

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +      
Sbjct: 540 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 599

Query: 351 NMQRRAERL---FREANVSVVWE 370
           +  ++A  L     EA  +   E
Sbjct: 600 DNAKQARELISVLEEAEQTPSQE 622


>gi|170758353|ref|YP_001787402.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405342|gb|ACA53753.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 376

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 189/382 (49%), Gaps = 8/382 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     I + L  +  +  T +QE  +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MIKFEELGLSDSIIDILKNQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +          +A   L I PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENISPN------INAIQGLIITPTRELAIQITEEAMKLKKAKDLNILAAYGGKDIGSQI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+N  H+V+ TPGRL DH+    LN   LK +VLDEADEML +GF++++  I++++P+
Sbjct: 115 KKLKNNIHLVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNEVRSIIENTPR 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L FSAT++  +  LA    +D   + I  E     +I    +      +   +  I
Sbjct: 175 KRQTLCFSATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  
Sbjct: 235 LNEENPFMAIIFCRTKRRVDNLEEDLYKKGYNCEKLHGSMTQPKRERIMRSFKNLEIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++  + 
Sbjct: 295 IATDVAARGLDITGVTHVFNYDIPENSESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLDM 354

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           + +E    +      + +   +
Sbjct: 355 IEKEIKFKIPRRTLTNSKEDNK 376


>gi|22135801|gb|AAM91087.1| At5g26740 [Arabidopsis thaliana]
          Length = 748

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 136/417 (32%), Positives = 216/417 (51%), Gaps = 13/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++        P  L +APTRELA QV +E++        V     GGVS   ++  L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQSAL 225

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P KR+
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285

Query: 182 MLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   +        +   +   V    E        Y     + S R      I
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  V 
Sbjct: 346 TVYAKGGKNIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVL 404

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R    
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L R+      +   P+V  + E  A +++     L+ +  D  K       K   EK
Sbjct: 465 LERDVGCHFEFISPPTVGDLLESSADQVV---ATLNGVHPDSIKFFSATAQKLYEEK 518


>gi|93006300|ref|YP_580737.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
 gi|92393978|gb|ABE75253.1| DEAD/DEAH box helicase-like [Psychrobacter cryohalolentis K5]
          Length = 384

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 183/378 (48%), Gaps = 9/378 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F ++P       A+S+ G+  LT +Q  IL   L  +D +  AQTG+GKT  F L +
Sbjct: 4   FTTFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTI 63

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              LL      D       P A+ +APTRELA Q+  +   L   T +     +GG +  
Sbjct: 64  MEALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALTKYTSLHSVCIMGGTNYE 123

Query: 116 -RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ++    +    I++ TPGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ ++ 
Sbjct: 124 TQQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVG 183

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +  +   V I  E++    +D    L+    + 
Sbjct: 184 RMPPNTDRQSLLFSATFNQDVMGLAYRWLHEPEFVEIEPEHKTSELVDQHFYLLTEDQKL 243

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+  I+     +  I+F + +  V R    L +     V LSG++ QQ+R   LQ  +D
Sbjct: 244 EAVERIITDSTVEKVIIFANRKDQVKRLYHKLRQGHKI-VMLSGDVIQQKREKYLQRFKD 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G A V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG+ G+S+  + ++ 
Sbjct: 303 GHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGQTGISISFVSEDD 362

Query: 353 QRRAERLFREANVSVVWE 370
                 L +  +     E
Sbjct: 363 AFNIPALEKHLDTKFKLE 380


>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
 gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
          Length = 487

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 111/383 (28%), Positives = 188/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P+ I  AL ++G  + T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 46  VKTFKEMKFPRPILAALKKKGITHPTPIQVQGLPAVLTGRDMIGIAFTGSGKTLVFTLPI 105

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L +     F     P  + + P+RELA Q    +         +    +   +CIG
Sbjct: 106 IMFSLEQEKAMPFQRNEGPYGMIVVPSRELARQTFEVITHFSRALEAHGFPSLRTNLCIG 165

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G S+  +   ++ G H+VV TPGRL D +  + + +   + +VLDEAD M+D+GF +D+ 
Sbjct: 166 GSSIKEQSDAMKRGVHMVVATPGRLMDLLDKRIITLDVCRYLVLDEADRMIDMGFEEDVR 225

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V VN+        D+      V    
Sbjct: 226 TIFSYFKSQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA 285

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   ++ V    + L     + VA+ G+ SQ+ER +A++  
Sbjct: 286 KVVYLLECLQKTPPP-VLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKSQEERVHAIREF 344

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             G   V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I +
Sbjct: 345 HQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGVATTFINK 404

Query: 351 NMQR----RAERLFREANVSVVW 369
           + +       + L  EA   +  
Sbjct: 405 SCEESVLLDLKHLLMEAKQKITR 427


>gi|253690374|ref|YP_003019564.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259585615|sp|C6DHF5|RHLB_PECCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|251756952|gb|ACT15028.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 430

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 193/387 (49%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L+NG 
Sbjct: 76  ANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+      S   + +  A + L  P
Sbjct: 376 GHSIPVSKYNSDALMNDLPAPKRLTRP 402


>gi|115683622|ref|XP_784902.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
 gi|115971375|ref|XP_001190564.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
           [Strongylocentrotus purpuratus]
          Length = 869

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 105/369 (28%), Positives = 184/369 (49%), Gaps = 4/369 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   L +  Y   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ + D   
Sbjct: 423 VLTILKKNNYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTMAFLLPMFRHIM-DQDPLE 481

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L + PTRELA+Q+ +E +      G+      GG  +  +  +L+ GA I+V 
Sbjct: 482 AEDGPITLIMTPTRELAMQIFKECKKFTKSMGLRAVCVYGGTGISEQIAELKRGAEIIVC 541

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+     +VLDEAD M D+GF   +  I+++    R+ ++FSA
Sbjct: 542 TPGRMIDMLGANNGRVTNLRRCTYLVLDEADRMFDMGFEPQVMKIVENIRPDRQTVLFSA 601

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  LA+      + V +   +   SD+   A+++    +   ++ +L Y+     
Sbjct: 602 TFPRQMEALARKILTKPIEVQVGGRSVVCSDVTQHAMILEEDQKFLKLLELLGYYDEGQI 661

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF   + S     K L +  +  +AL G + Q +R + +Q  +    ++ +AT VAARG
Sbjct: 662 LVFVEKQESADLLLKDLMKASYPCLALHGGIDQYDRDSIIQDFKAANVKILVATSVAARG 721

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +L LVI+ +  ++ E+ +HR GRTGRAG KG S   +     + A  + +   +S 
Sbjct: 722 LDVKNLVLVINYDCPNHYEDYVHRVGRTGRAGNKGFSYTFLMPEQAKYAGDVIKAFELSG 781

Query: 368 VWEPAPSVE 376
              P    E
Sbjct: 782 AKVPEELTE 790


>gi|332976897|gb|EGK13719.1| DEAD/DEAH family ATP-dependent RNA helicase [Desmospora sp. 8437]
          Length = 233

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 26/253 (10%)

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ ++  + E+ +HR GRTGRAGR G+++ ++     ++   
Sbjct: 1   MATDVAARGIDVGTVSHVINYDIPQDAESYVHRIGRTGRAGRTGIALTLVTPREMKQLRS 60

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDP 413
           +  E    +     PS+E + ER  Q++L++ L +++IQ  E     +++V  L  KHD 
Sbjct: 61  IEHEIAGELKPRELPSLEEVAERQ-QQLLKEQL-VETIQSGELIPIFEELVQNLTEKHDA 118

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
            +I                       ++  DRF   + A     G      G   F ++V
Sbjct: 119 NQI-----------------AAAALHMAFADRFTGGTDAV-YDFGETGASPGMVRFFINV 160

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G       R L+  +   +GI  + +G I +    +FVEV  +    +   ++  K I  
Sbjct: 161 GRNADIRPRELVKAIAEQAGIAAKKVGRINIYDRFSFVEVPEEAAPFVFEALRQSK-ING 219

Query: 534 KYLGGEKPDFRGY 546
             +  E    R  
Sbjct: 220 ARVNLEPARPRNR 232


>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 524

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 196/399 (49%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 45  LSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 104

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 105 KTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 164

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 165 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 224

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    ++I      
Sbjct: 225 IDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIVQKMEARTNIAQTVHY 284

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 285 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 344

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 345 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 404

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 405 VSLVHHAEQGALKRIERFVRSPL---PVNVIEGFEPRKA 440


>gi|303244602|ref|ZP_07330935.1| helicase domain protein [Methanothermococcus okinawensis IH1]
 gi|302485028|gb|EFL47959.1| helicase domain protein [Methanothermococcus okinawensis IH1]
          Length = 343

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 71/317 (22%), Positives = 144/317 (45%), Gaps = 19/317 (5%)

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++     V  SD+  A+   +  +     +VFC TRA V+     LA   ++   + G+
Sbjct: 25  MVEQIYYDVRSSDKFEALCRTIDMNNDFYGLVFCKTRADVNDIANKLANRGYKAEGIHGD 84

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           + Q +R   L   ++ R+ + +ATDVAARGID+ +L  VI+  L  NPE+ +HR GRTGR
Sbjct: 85  IVQNQRERILSRFKNKRSNILVATDVAARGIDINNLTHVINYSLPQNPESYVHRIGRTGR 144

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL---D 394
           AG+KG ++  +  +  R+ + + + A   +     P+VE I       ++++   +    
Sbjct: 145 AGKKGTAITFVQPDEFRKLKYIKKIAKTDIEKRELPTVEDIIHAKKSSVIENISKIVSSG 204

Query: 395 SIQGDEKKMVDVLLAK--HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
            +  +   +   LL +  +D EK+ A  L+         ++   +      +        
Sbjct: 205 EVSQEYLDIAKKLLEENNNDAEKVIASLLKYSLNDELNEKKYGKIKHSRNSN-------- 256

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                  ++  +G +   +++G K     R L+  +   +G+  + I  + V  + +++ 
Sbjct: 257 ------VKEVKEGQTRLFIALGKKDGMNPRKLVEYIEDETGVRGRYIDDVAVFENFSYIT 310

Query: 513 VSADGVDLLRRTVKLDK 529
           VS+   D + +T+   +
Sbjct: 311 VSSRDADKIMKTLGRTR 327


>gi|262273976|ref|ZP_06051788.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
 gi|262221786|gb|EEY73099.1| ATP-dependent RNA helicase [Grimontia hollisae CIP 101886]
          Length = 441

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 177/378 (46%), Gaps = 7/378 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + + + +   G+   T VQ + +      KD+L S++TGSGKT+AF L     
Sbjct: 3   FEDLGLDKRLLKTMELWGFDTPTDVQASAIPVVCAGKDLLASSKTGSGKTLAFLLPALQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           ++    +    S P  + +APTREL  QV  EL  L A T     + +GG + + + ++ 
Sbjct: 63  VM--RSKAFSRSGPRVVVLAPTRELVKQVYGELRKLLAGTQFKGMLILGGENFNDQAKEF 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPK 178
           +     +V TPGRL DH+  + L++  L+ ++LDEAD MLDLGF   ++ I    +   +
Sbjct: 121 RKNPAFIVATPGRLADHLEHRHLSLEGLELLILDEADRMLDLGFAPQLKAINSAANHRRR 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +  M   +          A   +                      +   L  +   +  +
Sbjct: 181 QTLMFSATLDHQQVNEIAADMLKDPKRVAIGFVNEEHKDIEQRFFLCDHLDHKQALLDRV 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  ++F +TRA   R      E   + VALSG+LSQ  R+  +     G  +V 
Sbjct: 241 MEQESYQQVMIFTATRADTDRLATWFVERGIKAVALSGDLSQSARNRIMNEFERGLHKVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVA+RG+D+ ++  V++ ++  + E  +HR GRTGRAG KG+++  +        + 
Sbjct: 301 VTTDVASRGLDISNVSHVVNFDMPKHAEEYVHRIGRTGRAGNKGIAISFVGPKDWNSFKN 360

Query: 359 LFREANVSVVWEPAPSVE 376
           +    +  + ++    +E
Sbjct: 361 IEGFLDKRMSFQTLEGLE 378


>gi|153834694|ref|ZP_01987361.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
 gi|148868890|gb|EDL67950.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi HY01]
          Length = 437

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 197/386 (51%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + DA  ++QD
Sbjct: 367 NLPPIEEYIEHAIPVSDYDASALIQD 392


>gi|321459317|gb|EFX70372.1| hypothetical protein DAPPUDRAFT_328137 [Daphnia pulex]
          Length = 738

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/402 (29%), Positives = 194/402 (48%), Gaps = 34/402 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE+  + ++I   ++   Y   T VQ+  +   L  +DV+  AQTGSGKT AF + +
Sbjct: 220 INTFEDVKLTEIIRSNIALTRYDKPTPVQKYAIPIILARRDVMACAQTGSGKTAAFLVPI 279

Query: 59  ASTLLAENDRFS----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + L       +              PLAL +APTRELA Q+  E +    ++ V   V 
Sbjct: 280 LNQLFERGPVVNQSAGQRSYGRRKQYPLALVLAPTRELATQIYDEAKKFAYRSRVRPCVV 339

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  V ++ +DL+ G H++V TPGRL D +    + + H   +VLDEAD MLD+GF   
Sbjct: 340 YGGADVRQQMQDLERGCHLLVATPGRLVDMLERGKIGLEHCNFLVLDEADRMLDMGFEPQ 399

Query: 169 IEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I++         R+ LMFSAT    I  LA+++ ++ + + +        +I  + V
Sbjct: 400 IRRIVEQDTMPKTGDRQTLMFSATFPKEIQMLARDFLENYIFLAVGRVGSTSENITQKIV 459

Query: 225 LVALS---------------DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
            V                  ++ N+ V        +  +VF  T+       + L    +
Sbjct: 460 WVEEHDKRSFLLDLLNASGLNKFNSQVETESTEHEQLTLVFVETKRGADALEEFLYRDGY 519

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
            V ++ G+ SQ+ER +AL+  R G+  + +AT VAARG+D+P ++ VI+ +L S+ E  +
Sbjct: 520 PVTSIHGDRSQREREDALKRFRSGKTPILVATAVAARGLDIPHVKHVINFDLPSDVEEYV 579

Query: 330 HRSGRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           HR GRTGR G  G++     +   N+ R    L  E    + 
Sbjct: 580 HRIGRTGRMGNLGVATSFFNEKNRNLIRDLVELIIETKQELP 621


>gi|255559772|ref|XP_002520905.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539871|gb|EEF41450.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 407

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 105/381 (27%), Positives = 193/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L  
Sbjct: 33  ITSFDEMGIKNDLLRGIYAYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTA 92

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    AL ++PTRELA Q  + +  +     +    CIGG SV  + 
Sbjct: 93  CQLVD------TSSREVQALILSPTRELAAQTEKVILAIGDYINIQAHACIGGKSVGEDI 146

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G H+V GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P 
Sbjct: 147 RKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 206

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  D +++ +  +      I    V +     + + + +
Sbjct: 207 ELQVVLISATLPNEILEMTSKFMTDPIKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 266

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V ++ G++ Q+ER   +   + G  RV
Sbjct: 267 LYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFQSGTTRV 326

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +   
Sbjct: 327 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILR 386

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 387 DMEQYYSTQIDEMPMNVADLI 407


>gi|39972847|ref|XP_367814.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
 gi|152013519|sp|A4QYM6|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
 gi|145012485|gb|EDJ97139.1| hypothetical protein MGG_07718 [Magnaporthe oryzae 70-15]
          Length = 790

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 230/560 (41%), Gaps = 37/560 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 261 SLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYR 320

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +     + +APTRELA+Q       L + T +   + +GG+S+  +  +L+   
Sbjct: 321 PKKVPTSR---VVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRP 377

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 378 DVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 437

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + S+ +    +              R   +V + + 
Sbjct: 438 FSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCKN 497

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +        +          L G +SQ +R  +++  RDG+    +AT
Sbjct: 498 LYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLAT 557

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  ++ VI+ E   + E  +HR GRT RAGR G ++ +  +  ++  +   +
Sbjct: 558 DLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVK 617

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                           I  R       D  +   I   E ++  V+  + + + +A   +
Sbjct: 618 AGKAQ--------GAKISSRIIDAADADS-WQAKIDELEDEVEAVMREEKEEKVLAQADM 668

Query: 422 RIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            + +    +   ++I      +  +  +D   A + G  + +  +       ++  K   
Sbjct: 669 EMRKGENMIRYEDDIKARPKRTWFETEKDKKAAREAGRAALNGVRE------ALKKKHGG 722

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLRRTVKLDKGIQLKYLGG 538
           +             ++ +    +    +     V      +   +   L+         G
Sbjct: 723 K------------NLSNKDKKKLDAMAEAKEARVWKKGAAERAGKGAVLNFKKDKSSKKG 770

Query: 539 EKPDFRGYKSSGFKSKNSQD 558
                R  K    + K  + 
Sbjct: 771 PVVGGRVAKKGAPRGKPRRR 790


>gi|294637929|ref|ZP_06716198.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
 gi|291088955|gb|EFE21516.1| ATP-dependent RNA helicase RhlB [Edwardsiella tarda ATCC 23685]
          Length = 429

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL  +G+ + T +Q   L   +  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPMVIKALESKGFHSCTPIQALALPLAIAGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ + L+ G 
Sbjct: 76  AIAERKTNQPRALIMAPTRELAVQIHSDAEPLARETGLRLGLAYGGDGYDKQLKVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQGHVDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPVAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILDDFTKGHIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYVLNLPAIENYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|261758239|ref|ZP_06001948.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
 gi|261738223|gb|EEY26219.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
          Length = 462

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 192/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 24  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 84  RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 142

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 143 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 202

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 203 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 262

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 263 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 322

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P    V++ +    PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 323 VPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 382

Query: 369 WEPAP 373
            + AP
Sbjct: 383 IKDAP 387


>gi|260168758|ref|ZP_05755569.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
           F5/99]
          Length = 535

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 192/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 97  VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 156

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 157 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 215

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 216 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 275

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 276 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 335

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 336 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 395

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P    V++ +    PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 396 VPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 455

Query: 369 WEPAP 373
            + AP
Sbjct: 456 IKDAP 460


>gi|332297922|ref|YP_004439844.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
 gi|332181025|gb|AEE16713.1| DEAD/DEAH box helicase domain protein [Treponema brennaborense DSM
           12168]
          Length = 610

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 129/488 (26%), Positives = 223/488 (45%), Gaps = 20/488 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++ + + + ++  GYV  T VQE +L   L   D+ V +QTG+GKT A+ +++ 
Sbjct: 1   MEFTEFDLHEELQKGIAGAGYVTCTPVQEQVLKGSLEGADLYVQSQTGTGKTAAYLISII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L   +     +   AL + PTRELAVQV +E + L   T +      GGV   ++  
Sbjct: 61  QEMLTREE----VAGKKALVMVPTRELAVQVEQEAKKLLEFTPLKAGSFYGGVGYTQQTA 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+N  +I++GTPGR+ D      +++S +  +V+DEAD M D+GF  D+  ++   PK 
Sbjct: 117 MLKNNVNIIIGTPGRVIDLQESGAMDLSSVAFLVVDEADRMFDMGFYPDLRTLIKVLPKT 176

Query: 180 RRMLMF--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                   SAT++  +  LA  Y ++A  + I +E     +ID   + V+   +   ++ 
Sbjct: 177 HDRQTMLFSATLNTYVKNLAWEYTEEAKEITIEAEQLTVEEIDQVLLHVSSDSKMKLLLG 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL++   ++ IVFC+T+ S     K L  +  +   + G+L Q +R   L+  + G  + 
Sbjct: 237 ILQHEKPESVIVFCNTKRSCEVVAKRLQLNGIESEFIIGDLPQAKRLQVLESFKRGSLKC 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ DL +V++ +L +  EN +HR GRT RAG+ G +     +       
Sbjct: 297 LVATDVAARGIDVNDLAMVVNYDLPNESENYVHRIGRTARAGKSGKAYTFCSEQDVYNLP 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ---------DPLFLDSIQGDEKKMVDVLL 408
            + R     +    A       ++ A   ++          P       GD +       
Sbjct: 357 AIERYLGAPIPASVAYEDMMTEDKSASVYIRTGDYGDDDGRPFRNRRDGGDRRGASRSGD 416

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD----RFRDDSRAFKVGGGSRDNFK 464
           ++  P   AA   R +R      E           D    R   + R  +   G     +
Sbjct: 417 SRRPPRDGAAADSRNNRNRRGPDEARFDGDRKPRTDIRTERGGRNDRTERAPRGKPGQER 476

Query: 465 GSSWFSLS 472
            +  +  +
Sbjct: 477 AAGSYRKN 484


>gi|326566475|gb|EGE16625.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC1]
          Length = 380

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 187/376 (49%), Gaps = 9/376 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +LL    + D       P AL +APTRELA Q+  +   L   + +      GG    
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFD 125

Query: 116 RERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 126 KQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVR 185

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++ 
Sbjct: 186 HMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKT 245

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +A+  IL     K  I+F + +  V R    L  H      LSG+++QQ+R   LQ  +D
Sbjct: 246 SALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKV-TMLSGDVAQQKRERYLQRFKD 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N 
Sbjct: 305 GEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEND 364

Query: 353 QRRAERLFREANVSVV 368
                 L R  +    
Sbjct: 365 AFNLPALERHIDQKFK 380


>gi|325119679|emb|CBZ55232.1| putative DEAD/DEAH box helicase [Neospora caninum Liverpool]
          Length = 694

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 181/402 (45%), Gaps = 27/402 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F L    
Sbjct: 283 SFEEAGFPAPIQNQLKKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 342

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-----------------GV 103
              A+    +P   P+ L +APTRELA+Q+  E                           
Sbjct: 343 HASAQPP-LAPGQGPIVLVLAPTRELAMQIRHECMRFTEGLALSSSAEDQEGGQRSGVRF 401

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
             A   GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+
Sbjct: 402 RTACVYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDM 461

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF   +  I       R+ L++SAT    +  LA  + +  V      +    ++ +   
Sbjct: 462 GFEPQVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQ 521

Query: 224 VLVALSDRDNAIV---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +  +S           +      +  ++FC T+    +  + L     + +A+ G+  Q
Sbjct: 522 RVEVVSSNQLQHRLLSVLQEDIAGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQ 581

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER   L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG 
Sbjct: 582 RERDRILHDFRKGDCEILLATDVASRGLDIHDVKFVINYDVPKNIESYIHRIGRTGRAGN 641

Query: 341 KGMSVFVIPQN----MQRRAERLFREANVSVVWEPAPSVEAI 378
           KG ++     +     +    R   E   SV  EP P +E I
Sbjct: 642 KGTAISFFQYDFYSPEKVTMARKICEVMRSVGQEPPPELEKI 683


>gi|224141279|ref|XP_002324002.1| predicted protein [Populus trichocarpa]
 gi|222867004|gb|EEF04135.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 186/385 (48%), Gaps = 7/385 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I + + + G+ + T +Q       L+ +D++  A+TGSGKT+ + +  
Sbjct: 153 LTSFEATGFPSEILKEVLKAGFSSPTPIQAQSWPVALQSRDIVAVAKTGSGKTLGYLIPG 212

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P   P  L ++PTRELA Q+  E       + +      GG     + 
Sbjct: 213 FIHL--KRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 270

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L  GA IVV TPGRL D +  + ++++ +K +VLDEAD MLD+GF   I  I+   P 
Sbjct: 271 KELDRGADIVVATPGRLNDILEMRRVSLNQVKYLVLDEADRMLDMGFEPQIRKIVKEVPA 330

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    E   +  I     L+A  ++   + 
Sbjct: 331 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNIDELVANKSITQHVELLAPLEKHRRLE 390

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR     + I+   +   +           F   A+ G+ SQ ER + L   R GR+ 
Sbjct: 391 QILRSQEPGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLSQFRTGRSP 450

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++         + A
Sbjct: 451 ILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYA 510

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
             L +    +    P P + A+  R
Sbjct: 511 SDLIKVLEGANQLVP-PEIRAMASR 534


>gi|194745414|ref|XP_001955183.1| GF18634 [Drosophila ananassae]
 gi|190628220|gb|EDV43744.1| GF18634 [Drosophila ananassae]
          Length = 704

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 272 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 332 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGSQMRDLQRGC 390

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 391 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 450

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 451 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVEVCDEFSKEEKLKSLLSDIYD 510

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 511 TSENPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 570

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 571 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 630

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 631 VDVLREANQEI 641


>gi|163803186|ref|ZP_02197068.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
 gi|159173007|gb|EDP57841.1| ATP-dependent RNA helicase [Vibrio sp. AND4]
          Length = 437

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 197/387 (50%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  
Sbjct: 15  DLKPQVIEGLDKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTT 74

Query: 66  NDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G
Sbjct: 75  PEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYGGESYDKQLAKLQDG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--M 182
             I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    
Sbjct: 135 VDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNKDKMTLLQTLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIIFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGDVDLLVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +   
Sbjct: 315 VAARGLHIPLVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDYAVNLPPIEEY 374

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQD 389
              S+          + + DA  ++QD
Sbjct: 375 IEHSIP---------VSDYDASALIQD 392


>gi|46124853|ref|XP_386980.1| hypothetical protein FG06804.1 [Gibberella zeae PH-1]
 gi|91206556|sp|Q4I7K4|DED1_GIBZE RecName: Full=ATP-dependent RNA helicase DED1
          Length = 675

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/380 (30%), Positives = 188/380 (49%), Gaps = 18/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 193 LDEHLCRNIELAHYKVPTPVQKYSIPIVSGGRDLMACAQTGSGKTGGFLFPILSQAFING 252

Query: 67  DRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               PA+A           P +L +APTREL  Q+  E      ++ V   V  GG  + 
Sbjct: 253 PSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIG 312

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--- 172
            + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I  I   
Sbjct: 313 SQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEG 372

Query: 173 -LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                 + R+ LMFSAT    I  LA+++ KD + +++        +I  +   V   D+
Sbjct: 373 EDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDVDK 432

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +++IL  H     ++F  T+      +  L    F   ++ G+ +Q+ER  AL+  R
Sbjct: 433 RSVLLDILHSHANGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFR 492

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +GR  + +AT VAARG+D+P +  VI+ +L ++ ++ +HR GRTGRAG  G++     + 
Sbjct: 493 NGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRG 552

Query: 352 MQ---RRAERLFREANVSVV 368
            +   R    L +EAN  V 
Sbjct: 553 NRGIVRELMDLLKEANQEVP 572


>gi|320157764|ref|YP_004190143.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
 gi|319933076|gb|ADV87940.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus MO6-24/O]
          Length = 435

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ G 
Sbjct: 76  AHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P  +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + + D+  ++QD
Sbjct: 376 EHTIP---------VSDYDSSALIQD 392


>gi|170727839|ref|YP_001761865.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813186|gb|ACA87770.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 428

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 189/378 (50%), Gaps = 5/378 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    ++  +I +A+   GY  LT VQ  ++   +   D++  A+TG+GKT AF L L 
Sbjct: 1   MKFSAFDLSPLILDAVEVCGYQQLTQVQSKVIPVAVTGCDLMACAETGTGKTAAFALPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL E   F   SA   L + PTRELA+QV   +      T +      GG +++ +R+
Sbjct: 61  QKLLDE---FLDRSALRGLILTPTRELAIQVADNISRYSQFTSLKTLAVYGGANMNPQRK 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V TPGRL D I   GL++S + ++V+DEAD MLD+GF  DIE +     ++
Sbjct: 118 ALNAGVDILVATPGRLFDFIGQHGLDLSSVTSLVIDEADRMLDMGFVRDIERVKGLVARQ 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
                FSAT S  +  LA+            + ++  S ++    LV    +   +  ++
Sbjct: 178 HVTHFFSATYSDDVKCLAQKM-LCDPTWINVATSKSASSVEQEVYLVDKRRKAELLSELV 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF S++ S     K L     +     G+ +Q  R+ AL+  + G  RV +
Sbjct: 237 GRNNWQQVLVFASSKESAEHIQKELKLDGLKSAVFHGDKTQGARNRALEEFKSGALRVLV 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L LV++ EL  + ++ +HR GRTGRAG  G ++  +  + ++  E +
Sbjct: 297 ATDVAARGLDIHALPLVVNIELPFDAQDYIHRIGRTGRAGLTGHAISFVCPSDEKMLEEI 356

Query: 360 FREANVSVVWEPAPSVEA 377
                  +     P  E 
Sbjct: 357 EALIERKLPRIVVPGYEQ 374


>gi|315434409|gb|AAK73934.2|AC025726_27 Hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 739

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 221/467 (47%), Gaps = 11/467 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + I +A S  GY + T +Q+A +   L  KD+   A TG+GKT AF L +  
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   
Sbjct: 209 RMIY---RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 265

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++G  +VV TPGRL DH       N+S+++ +VLDEAD ML+  FRD +  ++    + 
Sbjct: 266 LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQN 325

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIV 236
           R+ L+FSAT++  I  LA    +  V++ I         +    + +     +DR+  + 
Sbjct: 326 RQTLLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVA 385

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      N IVF  T+    R   +L     +V  +   L+Q +R  +L   +     
Sbjct: 386 ALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEID 445

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V ++TD+A+RG+D+  ++ VI+  +  + +  +HR GRT RAG+ G S+ ++ ++ ++  
Sbjct: 446 VLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEDERKLL 505

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + +        + +   + E + E   +RI +    +  I  +++   ++ +A+    K 
Sbjct: 506 KEIVNSNADRTLKQRLVAPEVV-EAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKT 564

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAFKVGGGSRDN 462
                     G  A   +  +      + R R++ R  KV    +  
Sbjct: 565 QNALEVGENGGAPAERRVWMMKESQIEKQRKREEKRQMKVDARKKAE 611


>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 758

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 215/460 (46%), Gaps = 20/460 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++   + I  A+S  G+   T +Q+  +   L  KD+  SAQTGSGKT AF L +
Sbjct: 130 FETFADLKLSRPIMRAISHIGFEKPTPIQQRAIPIALTGKDICASAQTGSGKTAAFLLPI 189

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + R     +   + I P RELA Q    LE L   T +  ++ +GG+ +  + 
Sbjct: 190 LERLQFRSRRVQ---STRVMIICPVRELATQCQSMLEQLARFTDITCSLAVGGLPLKAQE 246

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L+N   +VV TPGR+ DH    K +++  L+ +VLDEAD +L+LGF +++  ++   P
Sbjct: 247 AELRNRPDVVVCTPGRMIDHLRNSKSVHMDDLEILVLDEADRLLELGFTEEVLELVRMCP 306

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNA 234
            +R+ ++FSAT++  +  L     K  VR++          +             DR+  
Sbjct: 307 VQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVRIRPNREDDREAI 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +       N IVF  T++   R   +      +   L G L Q+ER  ALQ  RDG 
Sbjct: 367 LLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQRERLEALQKFRDGT 426

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V + TD+AARGID+  +  VI+ E+  +    +HR GRT RAGR G +V +  ++ + 
Sbjct: 427 VDVLLCTDIAARGIDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRL 486

Query: 355 RAERLFREAN--VSVVWEPAPSVEAIRER------DAQRILQDPLFLDSIQGDEKKMVDV 406
             +++ R     V     P P +   + R      D + ++ +      ++  EK+    
Sbjct: 487 VMKQVSRHCQGFVKSRAVPDPVIAQWKARIESMLEDVKLVMHEETLEKRMREAEKEATRA 546

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
                  ++I A   R  R    + +E   V+  +  DR 
Sbjct: 547 TNLLKHRDEINA---RPARTWFMSEKEKKNVNERAEEDRR 583


>gi|308080082|ref|NP_001183327.1| hypothetical protein LOC100501728 [Zea mays]
 gi|238010798|gb|ACR36434.1| unknown [Zea mays]
          Length = 649

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 124/504 (24%), Positives = 216/504 (42%), Gaps = 35/504 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +P  ++  +A+ E  Y +LT +Q   +   L   DV+ +A+TGSGKT+AF +   
Sbjct: 152 KLFSELPLSELTAKAIREMNYTHLTQIQARSIPHLLEGNDVMGAAKTGSGKTLAFLIPAI 211

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      FSP +   A+ + PTRELA+Q     + L       +   IGG +   E  
Sbjct: 212 EMLYH--THFSPRNGTGAIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNNRRSEAD 269

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH    K      LK +V+DEAD +L+  F +D++ I    P+
Sbjct: 270 QLAKGINLLVATPGRLLDHLQNTKSFIYRRLKCLVIDEADRILEQNFEEDMKQIFKRLPQ 329

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---------DYRAVLVALS 229
            R+ ++FSAT +P +   AK   +               D               +++  
Sbjct: 330 NRQTVLFSATQTPEVEKFAKLSFEKNEESKKKPVYVGVDDDKSKATVEGLQQGYCVISSD 389

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            R   +   LR    K  +VF S+  SV    ++L     +   + G+  QQ+R+     
Sbjct: 390 KRFLVLYAFLRKKRNKKIMVFFSSCNSVKFHAELLNFLGIECSDIHGKQKQQKRTTTFFS 449

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVI 348
                  + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R  + KG ++  +
Sbjct: 450 FCKAEKGILLCTNVAARGLDIPDVDYILQYDPPDEPKDYIHRVGRTARGEKGKGSALLFL 509

Query: 349 PQNMQRRAERLFREANVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
                +    L + A V++          P++++      + I+ +  FL+    +  + 
Sbjct: 510 LPEELKFLIYL-KAAKVTLTEYEFNQKNVPNLQS----QLENIVGENYFLNQSAKEAYRS 564

Query: 404 VDVLLAKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
             +    H  + I         ++  +          + L S   + R   R  +V GG 
Sbjct: 565 YVLAYDSHSMKDIFNVHQLDLQKVAASFGFKNPPKVNLDLDSSAAKHRKKMR--RVDGGK 622

Query: 460 RDNFKGSSWFSLSVGSKQKAEARW 483
           R     S+ +    G K K  A  
Sbjct: 623 RHGISASNPY----GRKDKGGAGD 642


>gi|197334079|ref|YP_002154825.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
 gi|226739236|sp|B5FF87|RHLB_VIBFM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197315569|gb|ACH65016.1| ATP-dependent RNA helicase RhlB [Vibrio fischeri MJ11]
          Length = 432

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 188/374 (50%), Gaps = 7/374 (1%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + F ++   PQVI + L+ +G++  T +Q   L   L  +D+   AQTG+GKT+AF  A 
Sbjct: 9   QNFADLGLQPQVI-DGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTAT 67

Query: 59  ASTLLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + LL          + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++
Sbjct: 68  FNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++ ++ G  I++GT GR+ D  +   ++   ++AVVLDEAD M DLGF  DI FI    P
Sbjct: 128 QQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMP 187

Query: 178 KKRR--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                  ++FSAT+S  +  LA  + ++   V +  E +    I       +   +   +
Sbjct: 188 APTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALL 247

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++       AI+F +T+         LA    +V  L+G++ Q++R   L+    G  
Sbjct: 248 QTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNV 307

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+    +     
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAIN 367

Query: 356 AERLFREANVSVVW 369
              +      S+  
Sbjct: 368 LPAIEEYIEHSIPQ 381


>gi|115770281|ref|XP_783077.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
           [Strongylocentrotus purpuratus]
          Length = 660

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 113/404 (27%), Positives = 198/404 (49%), Gaps = 7/404 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S   +   T +Q A +   L  KD+   A TG+GKT AF L +   LL +
Sbjct: 85  NLSRPILRAISGLNFTEPTPIQSATIPVALLGKDICACAATGTGKTAAFMLPVVERLLYK 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A     L + PTREL VQ+      L   T +   + +GG+ +  +   L+ G 
Sbjct: 145 PKQ---APVTRVLVVTPTRELGVQIFNVSRQLCEFTNIECCLAVGGLDIKLQEAALRKGP 201

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH+      ++S ++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 202 DIVIATPGRLIDHLHNAPTFSLSSVEVLILDEADRMLDEFFEEQMKEIIKMCSVARQTML 261

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K+ VR+ +        ++    + +  +    R+  +  +   
Sbjct: 262 FSATMTDQVKDLALVSLKNPVRIFVNENTDVAYNLQQEFIRIRDNREGDREAIVSALCCR 321

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +   + +VF  T+    R   +L     +V  L G+LSQ +R   L+M ++    + +AT
Sbjct: 322 NFHDHCMVFVQTKKQAHRLHVILGLLGIKVGELHGDLSQTKRMEMLRMFKEDLIDILVAT 381

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  ++ VI+  + ++ ++ +HR GRT RAGR G SV +  +  +R  + L +
Sbjct: 382 DLAARGLDIEGVKTVINFTMPNSEKHYVHRVGRTARAGRSGRSVSLAGEKERRMLKELVK 441

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            A   V     P     + RD    L++ +        E+K + 
Sbjct: 442 RAKNPVKSRIIPQGVVAKYRDKIASLEEDIEEVLRLEREEKEMR 485


>gi|323332194|gb|EGA73605.1| Has1p [Saccharomyces cerevisiae AWRI796]
          Length = 505

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 215/468 (45%), Gaps = 17/468 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   Q   +A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF +  
Sbjct: 41  VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + +F P +    + I PTRELA+Q+      L         + IGG +  +E 
Sbjct: 101 IELL--HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G ++++ TPGRL DH++        +LKA+++DEAD +L++GF D++  I+   P
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTQGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP 218

Query: 178 KKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            + R  M  +            ++       + V   ++N     ++   V+     R  
Sbjct: 219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFL 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + 
Sbjct: 279 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 338

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNM 352
              + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  N 
Sbjct: 339 ERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + + V +     P  + A  +   +++++   +L     D  +      A H
Sbjct: 399 LGFL-RYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASH 457

Query: 412 DPEKIAA----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             + +         ++ ++ G   P ++      SG+       +  K
Sbjct: 458 SLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPNTKRRKTHK 505


>gi|153000172|ref|YP_001365853.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|160874799|ref|YP_001554115.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|151364790|gb|ABS07790.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160860321|gb|ABX48855.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315267037|gb|ADT93890.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 451

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/396 (28%), Positives = 189/396 (47%), Gaps = 6/396 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + +++   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSIKHMGITEPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRSLSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I D++  K
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKHLFLNGLELLVLDEADRMLDLGFAPQLKAINDAADHK 178

Query: 180 RRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR  +  +                +  A     A+ +  +       +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHDEINDIAATLLKNPAHVAIGAAHSEHNDIHQRIFLCDHLDHKEALLA 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+    K  I+F +TR    R    L    F   ALSG+L Q  R+  +     G+ +
Sbjct: 239 RLLKDETHKQVIIFTATRPDTERLAAKLTAQGFATAALSGDLKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVA+RG+DL ++ LV++ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 VLVTTDVASRGLDLLNVSLVVNFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +++      +      P +EA       +  Q P  
Sbjct: 359 KKVQVFLRKTFEISTIPGLEAKFSGLKSKAKQTPAK 394


>gi|57101724|ref|XP_541930.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
           isoform 1 [Canis familiaris]
          Length = 488

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 120/457 (26%), Positives = 198/457 (43%), Gaps = 25/457 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E   + G    T VQ   +   L  +D L  A+TGSGKT AF L +   L  + 
Sbjct: 9   LSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +   L    G+   + +GG+ +  +  +L    H
Sbjct: 69  ------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +V+ TPGRL DH+R            L     D   E     F  D+E IL + P +R+ 
Sbjct: 123 VVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRRQT 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----I 238
           L+FSAT++  +  L              +  R    +D R +LV    +D  +V+     
Sbjct: 183 LLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQNF 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   +    R+ 
Sbjct: 243 QDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYRIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q        
Sbjct: 303 IATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLVHA 362

Query: 359 LFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL----LAKH 411
           +  +    +     E A  ++ + + +  R  +  + L++   DEKK ++      L   
Sbjct: 363 IEEQIKKQLEELSVEEAKVLQILTQVNVVR-RECEIKLEAANFDEKKEINKRKQLILEGK 421

Query: 412 DPEKIA---AGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           DP+  A   A   +I +      E++          R
Sbjct: 422 DPDLEAKRKAELAKIKQKNRRFKEKVEQALQRQKASR 458


>gi|256821842|ref|YP_003145805.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256795381|gb|ACV26037.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 460

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L++ G+  +T +Q   L   L  KDV+  A+TGSGKT  FGL +   L  +N
Sbjct: 11  LQPALIANLADLGFERMTPIQADALPQVLEGKDVIAQAKTGSGKTAVFGLGILEKLDPKN 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                  +  ++ + PTRELA QV  E+  L      V +    GG  +  +   L++GA
Sbjct: 71  ------FSVQSMVLCPTRELAEQVAEEIRRLARPIANVKILTLCGGTPLRPQADSLKHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+  + L++  +  +VLDEAD MLD+GF D ++ I++  P++R+ L+F
Sbjct: 125 HIVVGTPGRIVDHLEKQTLDLDAISTLVLDEADRMLDMGFEDSMDAIVNELPRQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT  P I  +A+      V V    ++   S       +    +RD A+  +L  +   
Sbjct: 185 SATYPPQIQAIAERVMVKPVLVQALEKHDSSSIKQDFYRISDEGERDVAVRLLLLKYRPD 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC+T+  V   T+ L  H F V+AL G+L Q+ER  AL    +    + +ATDVAA
Sbjct: 245 STVIFCNTKRHVKDLTQELKRHGFSVLALHGDLEQKERDQALIRFANNSVSIMVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+LVI+  ++S+PE  +HR GRTGRAG KG +  ++    + +  RL      
Sbjct: 305 RGLDIDSLDLVINYHIASDPEIHVHRIGRTGRAGNKGHACSIVISKEKHKVARLAEYLGQ 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            +     P  + ++E       + P+    I G +K+ + 
Sbjct: 365 EIEPIALPDTQLLKEP----TFRPPMATIQIDGGKKQKLR 400



 Score = 50.4 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 23/67 (34%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
               +   +  G KQK     ++  L     I    +G I+V     +V V    ++   
Sbjct: 383 RPPMATIQIDGGKKQKLRPGDILGALTADYRIEGNDVGKIQVANSWAYVAVKTAVLETAV 442

Query: 523 RTVKLDK 529
           + +   K
Sbjct: 443 QLLNNGK 449


>gi|119776347|ref|YP_929087.1| ATP-dependent RNA helicase RhlB [Shewanella amazonensis SB2B]
 gi|189040038|sp|A1SAL1|RHLB_SHEAM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|119768847|gb|ABM01418.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 439

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 121/370 (32%), Positives = 201/370 (54%), Gaps = 5/370 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    + +AL+E G+ + T +Q   L   L +KD+   AQTG+GKT+AF +A  + 
Sbjct: 11  FADLPLCDEVKQALNENGFEHCTPIQALSLPVLLEKKDIAGQAQTGTGKTLAFLVATFNH 70

Query: 62  LLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           LL          + P A+ +APTRELA+Q+ ++   L   +G+ V +  GG     +R+ 
Sbjct: 71  LLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKDATLLSKHSGLKVGIVYGGEGYEAQRKV 130

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--K 178
           L  G  +++GT GR+ D++R   +N+  ++AVVLDEAD M DLGF  DI F+ +  P  K
Sbjct: 131 LDKGVDVLIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIRFLFNRMPGAK 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R  ++FSAT+S  +  LA ++  D V+V IA E +   +I       ++ D+   + ++
Sbjct: 191 ERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMEDKLKLLHSL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     + AIVF +T+         L     +V  L+G++ Q++R   L+        + 
Sbjct: 251 IEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDIL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        
Sbjct: 311 VATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEEYALNLPA 370

Query: 359 LFREANVSVV 368
           +      S+ 
Sbjct: 371 IEDYIKHSIP 380


>gi|223041453|ref|ZP_03611656.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
 gi|223017711|gb|EEF16118.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor 202]
          Length = 404

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 198/387 (51%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +  AL  +G+   T +Q   L   L+  D+   AQTG+GKT+AF +A    LL  
Sbjct: 14  SIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHHLLT- 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+  S  + P AL +APTRELAVQ+  + E L   + + +A+  GG    ++   ++ G 
Sbjct: 73  NECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIEKGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+VGT GR+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++   PK  +   +
Sbjct: 133 DILVGTTGRVIDYVKQGIINLDCVQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTM 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+SP +  LA     +A  V I    R    I       +  D+   ++ +L    
Sbjct: 193 LFSATLSPRVRELAYEDMNNASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEW 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+       + L     +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 253 PERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P++  V + +L  + E+ +HR GRTGRAG+ G S+    +        +    
Sbjct: 313 AARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAIEEYI 372

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + D+Q +L  P
Sbjct: 373 GHSIP---------VSQYDSQALLALP 390


>gi|312881437|ref|ZP_07741232.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370919|gb|EFP98376.1| ATP-dependent RNA helicase RhlB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 189/374 (50%), Gaps = 4/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   L  +G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL  
Sbjct: 15  NLHPQIVTGLMNKGFNFCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLNV 74

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   L++G
Sbjct: 75  PEHTGRKVTQPRAIIMAPTRELAIQIYNDAKPLRESTGIRTALAYGGESYEKQLAKLEDG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--M 182
             I++GT GR+ D  + +  N++H++AVVLDEAD M DLGF  DI F+    P+ +    
Sbjct: 135 VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++   
Sbjct: 195 MLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEHKMPLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATD
Sbjct: 255 WPDRAIIFANTKHKCESIWGHLAADEHRVGLLTGDVPQKKRERILEQFTRGDVDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G SV    ++       +   
Sbjct: 315 VAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSFACEDYAVNLPAIEEY 374

Query: 363 ANVSV-VWEPAPSV 375
              ++ V E  PS 
Sbjct: 375 IEHTIPVSEYDPSA 388


>gi|28211793|ref|NP_782737.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28204235|gb|AAO36674.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 370

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 184/371 (49%), Gaps = 8/371 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +     + + L  +G  + T +Q   +       DV+  AQTG+GKT+AF L +
Sbjct: 1   MTNFKELGLSNDLIQNLKTQGINSPTPIQRESILLIKEGNDVIAEAQTGTGKTLAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +    +          L + PTRELA+Q+  E   L     + +    GG  +  + 
Sbjct: 61  FENMSPNINTI------QGLIVTPTRELAIQITEEAMKLNESKDLNILSAYGGKDIGSQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+   H+V+ TPGRL DH+    +++ +LK +VLDEAD+ML +GF++++E I+  + K
Sbjct: 115 NKLKGNIHLVIATPGRLLDHLDRNTIDLKNLKTLVLDEADQMLLMGFKNEVETIIKHTSK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT++ ++  LA  Y  D   + I  E     +I    +     ++ + +  +
Sbjct: 175 NRQTLCFSATMNSSVKKLAYKYMDDPKLITIQKEEITLKNIKQVLIETTDRNKLDDLCKV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+FC T+  V +    L +  +    L G+L+Q +R   ++  ++ + +  
Sbjct: 235 LNETNPFMAIIFCRTKRRVDKLEMDLYQRGYNCKKLHGDLTQSKREKVMKDFKNTKIQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  +  + + ++  N EN +HR GRTGRAG KG +   I    +     
Sbjct: 295 IATDVAARGLDITGVTHIYNYDIPENTENYIHRIGRTGRAGEKGYAYLFIDLKDKETLNI 354

Query: 359 LFREANVSVVW 369
           + +     +  
Sbjct: 355 IEKGIKTKIER 365


>gi|221124370|ref|XP_002163179.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Hydra magnipapillata]
          Length = 594

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 188/380 (49%), Gaps = 16/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK---------DVLVSAQTGSGKTVAFGLA 57
           +   + +A  + GY   T+VQ+  +   +            D++VS+QTGSGKT AF L 
Sbjct: 49  LAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTAAFLLP 108

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +  TLL +         P AL + PTRELA QV  +   L      +    I G   ++ 
Sbjct: 109 VLHTLLFKAP------TPGALIVCPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQL 162

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +      A++VV TPGRL D  R   + +  ++ +V+DEAD MLDLGF DD+  I   + 
Sbjct: 163 QIAKLQNANLVVATPGRLLDLQRSMQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTI 222

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIV 236
            +++ +MFSAT +P I  LA    ++  RV I S   +H++I            +   + 
Sbjct: 223 DRKQTMMFSATFAPRIQQLAARVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKLLD 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + LR      A+VF ST+         L +  F  VAL G LSQ  R+  L  +R G+ +
Sbjct: 283 HWLRDTTINQAVVFASTQIECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQ 342

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+P +  V +  L    E+  HR GRTGRAGR G++V       +R+ 
Sbjct: 343 ILVATDVAARGIDVPTITHVFNFGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKI 402

Query: 357 ERLFREANVSVVWEPAPSVE 376
             +   +   +  E  P +E
Sbjct: 403 FDIEAYSRQPIKPETIPGLE 422


>gi|172087635|ref|YP_203439.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|226739701|sp|Q5E8U5|RHLB_VIBF1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|171902232|gb|AAW84551.2| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 432

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 188/374 (50%), Gaps = 7/374 (1%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + F ++   PQVI + L+ +G++  T +Q   L   L  +D+   AQTG+GKT+AF  A 
Sbjct: 9   QNFADLGLQPQVI-DGLNAKGFIKCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLTAT 67

Query: 59  ASTLLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + LL          + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++
Sbjct: 68  FNHLLTTPAPEGRKITQPRAIIMAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQ 127

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++ ++ G  I++GT GR+ D  +   ++   ++AVVLDEAD M DLGF  DI FI    P
Sbjct: 128 QQVIEQGVDILIGTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMP 187

Query: 178 KKRR--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                  ++FSAT+S  +  LA  + ++   V +  E +    I       +   +   +
Sbjct: 188 APTERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDHKMALL 247

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++       AI+F +T+         LA    +V  L+G++ Q++R   L+    G  
Sbjct: 248 QTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNV 307

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+    +     
Sbjct: 308 DILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAIN 367

Query: 356 AERLFREANVSVVW 369
              +      S+  
Sbjct: 368 LPAIEEYIEHSIPQ 381


>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 399

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 186/374 (49%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +        +      GGVS   ++  L  G  
Sbjct: 66  GETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FS
Sbjct: 126 ILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +A  ++IA  +   ++I+   V V    +   + +++       
Sbjct: 186 ATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTVDKDRKSALLSHMITDGEWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R   L   + GR +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVAQLEKRGIQAEAFHSGRSQAIREKILADFKKGRLKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ ++    ++ +HR GRTGRA   G ++  + ++  +    + +     
Sbjct: 306 GIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCIIEKRLGHL 365

Query: 367 VVWEPAPSVEAIRE 380
           +        E  +E
Sbjct: 366 IERRVVEGFEPRKE 379


>gi|224112054|ref|XP_002316069.1| predicted protein [Populus trichocarpa]
 gi|222865109|gb|EEF02240.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 188/364 (51%), Gaps = 8/364 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   +   G+V+ T +Q       L+ +D++  A+TGSGKT+ + +    
Sbjct: 149 TFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAF- 207

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +  R +  + P  L +APTRELA Q+  E+      + V      GG     + ++
Sbjct: 208 -ILLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKE 266

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R
Sbjct: 267 LERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQR 326

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LMF+AT    +  +A +     V+VNI S +    +  I     +V   ++D  +  I
Sbjct: 327 QTLMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLSANKSITQYVEVVPQMEKDRRLEQI 386

Query: 239 -LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                    AI+FCST+    +  + +  +     A+ G+ SQ ER  AL   R G++ +
Sbjct: 387 LRTQERGSKAIIFCSTKRLCDQLARSIGRNFGA-AAIHGDKSQGERDWALNQFRSGKSPI 445

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D+ +VI+ +  S  E+ +HR GRTGRAG  G+S     +   + A 
Sbjct: 446 LVATDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAA 505

Query: 358 RLFR 361
            L +
Sbjct: 506 DLVK 509


>gi|195111735|ref|XP_002000433.1| GI10230 [Drosophila mojavensis]
 gi|193917027|gb|EDW15894.1| GI10230 [Drosophila mojavensis]
          Length = 801

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/393 (27%), Positives = 185/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   ++   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 289 ITSFDDVQLTEIIRNNVNLARYDKPTPVQKYAIPIIISGRDLMACAQTGSGKTAAFLVPI 348

Query: 59  ASTLLAENDRFSP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P            PL L +APTRELA Q+  E +    ++ +  AV  
Sbjct: 349 LNQMYELGLSAPPQSNRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLY 408

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 409 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 468

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 469 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 528

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 529 VYDQDKRSYLLDLLSSIRDGPEYSKDNLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDR 588

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P +  VI+ +L ++ E  +HR GRTGR 
Sbjct: 589 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVTHVINFDLPTDVEEYVHRIGRTGRM 648

Query: 339 GRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
           G  G++        +N+      L  E    + 
Sbjct: 649 GNLGVATSFFNDKNRNICSDLLELLIETKQEIP 681


>gi|167394408|ref|XP_001733535.1| pre-mRNA-processing ATP-dependent RNA helicase prp11 [Entamoeba
           dispar SAW760]
 gi|165894690|gb|EDR22596.1| pre-mRNA-processing ATP-dependent RNA helicase prp11, putative
           [Entamoeba dispar SAW760]
          Length = 636

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 100/374 (26%), Positives = 183/374 (48%), Gaps = 9/374 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K +    I  +  + +    Y   + VQ   +   +   D +V A+TGSGKT+A+ + L
Sbjct: 53  IKTWSECGINPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPL 112

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++A+    S    P+ +  AP RELA Q+  E+        +      GG  +  + 
Sbjct: 113 IKHVMAQRP-LSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQI 171

Query: 119 RDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             L+ G  IVV TPGR+ D      G+  N+  +  VVLDEAD M D+GF   I+ I++ 
Sbjct: 172 GALKRGTEIVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEG 231

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               ++++MFSAT   ++   A+ + K  + +     ++  + I+    ++ +  +   +
Sbjct: 232 IRPDKQIVMFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIEIKKKIARL 291

Query: 236 VNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++I+     K    I+F  T+ +     + L E     + L G + Q +R N +Q  + G
Sbjct: 292 ISIVLEQNNKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSG 351

Query: 294 RARVCIATDVAA-RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
             R  + T     RG+D+  LELVI+ +  ++ E+ +HR GRTGRAG++G ++  I +  
Sbjct: 352 IGRTILITTSLCARGLDIKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEE 411

Query: 353 QRRAERLFREANVS 366
           ++ +E + +   +S
Sbjct: 412 EKYSEDIVKALTLS 425


>gi|212722850|ref|NP_001131651.1| hypothetical protein LOC100193011 [Zea mays]
 gi|194692160|gb|ACF80164.1| unknown [Zea mays]
          Length = 455

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 205/418 (49%), Gaps = 10/418 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L + 
Sbjct: 24  STFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+         +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++  
Sbjct: 84  QELLSNRQA---EQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVL 140

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    HIVVGTPGRL DH    KG ++  +K +VLDEAD++L++ F   ++ IL   PK
Sbjct: 141 SIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR  +FSAT++  +  L +   ++  +V ++S+      +      V   D+D  ++++
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T  S      +L     + +++SG++SQ +R  AL   +     + 
Sbjct: 261 LNERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNIL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q   +    
Sbjct: 321 ICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVL 380

Query: 359 LFREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +     +        E +  +    DA+RI    L         + + D      D
Sbjct: 381 IEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKKRRNVGDDDEEVED 438


>gi|321468350|gb|EFX79335.1| hypothetical protein DAPPUDRAFT_244975 [Daphnia pulex]
          Length = 450

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/404 (22%), Positives = 179/404 (44%), Gaps = 22/404 (5%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E+G+   + +QE  +   L  +++L  A+ G+GKT A+ + + 
Sbjct: 64  TSFEDFCLKRELLMGIFEKGWETPSPIQEVGIPMALTGRNILARAKNGTGKTGAYCIPVL 123

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++             AL + PTRELA+Q  +    L     + + V  GG  +  +  
Sbjct: 124 EQVVPSEQHI------QALIVVPTRELALQTSQICIELAKHLDIRIMVTTGGTDLKDDIM 177

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +    H+V+ TPGR+ D +  K   +   K +VLDEAD++L   F   ++ I+   P K
Sbjct: 178 RIFGKVHVVIATPGRVLDLMEKKIAVMDRCKVLVLDEADKLLSQDFMGMLDRIISFLPAK 237

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L++SAT    +    + +  +   +N+  E             V    + + +  + 
Sbjct: 238 RQILLYSATFPVTVEEFMRKHIDNPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLF 296

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + E  +    +   + Q  R+      R+G  R  +
Sbjct: 297 SKLQINQSIIFCNSTQRVELLAKKITELGYSCYYIHARMQQAHRNRVFHDFRNGLCRNLV 356

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R+
Sbjct: 357 CSDLFTRGIDIQAVNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFALHRI 416

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
             E +  +  +P P           +++   L++   Q D ++ 
Sbjct: 417 ESELSTEI--KPIP-----------KVIDKSLYVAEFQEDSEEQ 447


>gi|167625006|ref|YP_001675300.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355028|gb|ABZ77641.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 474

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 188/379 (49%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +A+S RGY  LT VQ  +L   +  KD++  AQTG+GKT AF L L + L+ E
Sbjct: 36  DLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNRLIQE 95

Query: 66  NDRFSPAS-------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + F+              L + PTRELA+QV   +               GG +++ +R
Sbjct: 96  YNLFTEGDLEPEHQSKVKVLVLTPTRELAIQVADNISAYAQFLPFKTTAVYGGSNMNPQR 155

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  I+V TPGRL DHI   GL++S++  +V+DEAD MLDLGF  DIE +      
Sbjct: 156 KALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKVKKLVAA 215

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L FSAT S A+ TLA+     A      + +   S I     LV    +   +  +
Sbjct: 216 THQTLFFSATYSEAVKTLAEKM-LLAPEWINVATSATASLITQEVYLVDTRRKAELLSEL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF STR S       L     +     GE +Q  R+ AL   + G+ RV 
Sbjct: 275 IGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALDEFKSGKLRVM 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +    +   + 
Sbjct: 335 VATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQDREMLQE 394

Query: 359 LFREANVSVVWEPAPSVEA 377
           +      ++     P  E 
Sbjct: 395 IELLIEQTLPCITMPGYEE 413


>gi|125587400|gb|EAZ28064.1| hypothetical protein OsJ_12029 [Oryza sativa Japonica Group]
          Length = 472

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 208/393 (52%), Gaps = 13/393 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             F  +   P+++  A    G+   T +Q   +   L  +D++   QTGSGKT AFGL +
Sbjct: 41  STFAELGVVPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFGLPI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +        A  A  ++PTRELA Q+G++ E L +  G+   V +GGV   ++ 
Sbjct: 100 IQALLKQ----DKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQA 155

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVVGTPGRL DH    KG +++ LK +VLDEAD++L++ F+  ++ IL+  P
Sbjct: 156 VSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIP 215

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+RR  +FSAT++  ++ L +   ++ V+V +AS+      +      V    +D  +V+
Sbjct: 216 KERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVH 275

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        ++F  T  S       L    F+ +++SG++SQ +R  AL   +     +
Sbjct: 276 VLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAG  G +V ++ Q      +
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395

Query: 358 RLFREANVSVVWEPAPSVE--AIRER--DAQRI 386
            + +     +      + E   +RER  D++RI
Sbjct: 396 MIEKLLGYEIPDRKVDNAEIMILRERISDSKRI 428


>gi|109897939|ref|YP_661194.1| DEAD/DEAH box helicase-like [Pseudoalteromonas atlantica T6c]
 gi|109700220|gb|ABG40140.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
           T6c]
          Length = 447

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 7/379 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +G+AL  +G+   T +Q   +   L  KD++ S++TGSGKT+AF L     
Sbjct: 3   FSDLPLDHRLGKALEIKGFTEATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L +         P  L +APTRELA QV  +L+WL AK  +  A+ +GG + + + + L
Sbjct: 63  VLTKQPL--SRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++    VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I  ++  ++R
Sbjct: 121 RHYPQFVVGTAGRIADHLAGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 182 MLMFSATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             M  +                          S            +   ++ ++  + ++
Sbjct: 181 QSMMFSATLDNAALHYLTQSMLKAPHRISIGISSAEHKDIQQRFFLADNVTHKERLLTHM 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF +TRA   R + +L E     +ALSG+LSQ +R+N +     G+  + 
Sbjct: 241 INEKDHRQVIVFTATRADTERLSNLLKEQGLYSIALSGDLSQGQRNNIMSEFGRGQQHIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+A+RG+DL ++ LV++ +L    +  +HR GRTGRAG KG +V  +          
Sbjct: 301 VTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASYLS 360

Query: 359 LFREANVSVVWEPAPSVEA 377
           +       V +     +EA
Sbjct: 361 IKSFLQQEVSFSEIEGLEA 379


>gi|66810480|ref|XP_638950.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
 gi|74897085|sp|Q54QS3|DDX3_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx3; AltName:
           Full=DEAD box protein 3
 gi|60467576|gb|EAL65597.1| hypothetical protein DDB_G0283661 [Dictyostelium discoideum AX4]
          Length = 712

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 175/379 (46%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  V+   +    Y   T VQ++ L   L+ +D++  AQTGSGKT AF   + S +L +
Sbjct: 253 DLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPIISGILLD 312

Query: 66  NDRFSP---------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               +P         A+ P AL +APTRELA Q+  E       + V   V  GG  V  
Sbjct: 313 GAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFH 372

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G  I+V T GRL D +    +++S +K +VLDEAD MLD+GF   I  I+   
Sbjct: 373 QINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQIISEF 432

Query: 177 PKKRRMLMFSATISPAITTLAKN---YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                    +   S       +N                     +I  R   V   D+++
Sbjct: 433 DMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTTQNITQRIEYVVEEDKNS 492

Query: 234 AIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +++           ++F  T+ S    T  L +  F    + G+L+Q ER NALQ  R 
Sbjct: 493 YLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRS 552

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
                 +ATD+A+RG+ + ++ LVI+ +L ++    +HR GRTGRAG+KG+++    +  
Sbjct: 553 FATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKN 612

Query: 353 Q---RRAERLFREANVSVV 368
           +       +L + +N  + 
Sbjct: 613 KPVGAELLKLMKASNQDIP 631


>gi|312218576|emb|CBX98521.1| hypothetical protein [Leptosphaeria maculans]
          Length = 679

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 195/385 (50%), Gaps = 20/385 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +   GY   T VQ+  +   +  +D++  AQTGSGKT  F   + + 
Sbjct: 195 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 254

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    P S            P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 255 NFVNGPSPPPQSQAGGYGRQRKAYPTSLVLAPTRELVSQIFEEARKFAYRSWVRPCVVYG 314

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    ++++++K +VLDEAD MLD+GF   I 
Sbjct: 315 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIR 374

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I           R+ LMFSAT    I  LA+++ K+ + +++        +I  +   V
Sbjct: 375 RIVEGEDMPPTAARQTLMFSATFPRDIQMLARDFLKEYIFLSVGRVGSTSENITQKVEYV 434

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER  A
Sbjct: 435 EDADKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQGFPATSIHGDRTQREREKA 494

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L+M R+GR  + +AT VAARG+D+P+++ V++ +L ++ ++ +HR GRTGRAG  G++  
Sbjct: 495 LEMFRNGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATA 554

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              +  +   R    L +EAN  V 
Sbjct: 555 FFNRGNRGVVRDLLDLLKEANQEVP 579


>gi|307133003|ref|YP_003885019.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306530532|gb|ADN00463.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 428

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 189/387 (48%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  APAERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKVLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLASDGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYALNLPAIEDYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S   + E    + L  P
Sbjct: 376 GHRIPVSKYSSEALLTELPEPKRLSRP 402


>gi|194365407|ref|YP_002028017.1| ATP-dependent RNA helicase DbpA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348211|gb|ACF51334.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 458

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 197/377 (52%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     R        AL + PTRELA QVG+++  L      +  + + G      +
Sbjct: 61  LQAIDPSLIRV------QALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQ 114

Query: 119 --RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I   +
Sbjct: 115 LASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I  +A++  ++AV V       Q   I +    V  + R  A+ 
Sbjct: 175 HKDRQSLLFSATFPDSIRAMARDLLREAVEV-TVEGADQAPAIRHMFCEVEPAHRQKALA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +    
Sbjct: 234 GLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ +L  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + RA
Sbjct: 294 VLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKTRA 353

Query: 357 ERLFREANVSVVWEPAP 373
           E +  +    + W+  P
Sbjct: 354 EAIEAQMGQPLDWQKTP 370



 Score = 64.2 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL------------RIH 424
            + +RD + +L   L L +   +     DV     D E++AA               R+ 
Sbjct: 274 DMEQRDREEVL---LLLANRSCNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVG 330

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-------------GGSRDNFKGSSWFSL 471
           R G      +  +SLV+GR++ R ++   ++G               +           +
Sbjct: 331 RTGRAGASGLA-ISLVAGREKTRAEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRI 389

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
             G   K     ++  L   +G++ + IG I + P  ++V ++ +  +     ++  K  
Sbjct: 390 DGGKTDKLRPGDILGALTGDAGLSSKFIGKIAIFPTRSYVAIAREQANKAVAKLEAGKIK 449

Query: 532 QLKY 535
             ++
Sbjct: 450 GRRF 453


>gi|119175420|ref|XP_001239942.1| hypothetical protein CIMG_09563 [Coccidioides immitis RS]
 gi|118582048|sp|Q1DJF0|DED1_COCIM RecName: Full=ATP-dependent RNA helicase DED1
          Length = 659

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 174 VTTFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 233

Query: 59  ASTLLAENDRFSPAS-------------APLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S          P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 234 LSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 293

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 294 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 353

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 354 EPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 413

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HG    ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 414 KVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 473

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 474 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 533

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 534 GLSTAFFNRGNRGVVRDLIELLKEAHQEVP 563


>gi|284038209|ref|YP_003388139.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817502|gb|ADB39340.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 447

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 216/470 (45%), Gaps = 32/470 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+ + +  AL++ GY   T++Q+ + +  +  +DV   AQTG+GKT A+ L    
Sbjct: 2   TFDELNLNKPLLNALNDLGYTTPTTIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPTLR 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    DR      P  L I PTREL VQV   ++ L     + V    GGV++  +  +
Sbjct: 62  QMQFSKDR-----QPQLLIIVPTRELVVQVVDAVKKLTTYMNLTVVGVYGGVNMKAQTVE 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G  ++V TPGRL D + G  L    +K +V+DE DEML+LGFR  ++ +LD  P KR
Sbjct: 117 IMQGLDVLVATPGRLADFMLGGTLKTKGIKKLVIDEFDEMLNLGFRAQLKVVLDLLPPKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT++  +  L  +Y    VRV  A        ID     V        ++ +L 
Sbjct: 177 QNLLFSATLTDDVDQLVNDYFNKPVRVEAAPMGTPLEKIDQSGYRVPNFYTKINLLTLLL 236

Query: 241 YHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARV 297
              A     +VF +T+    +  + L       V  +    +Q +R  A+   + G  R+
Sbjct: 237 NRNAAMTKVLVFVATKQLADQLFEQLESGFPDQVGVIHSNKAQNKRFEAVNNFKAGTYRI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+ ARGID+ D+  V++ +L   PEN +HR GRTGRA R+G++V  I ++ +   E
Sbjct: 297 LIATDIIARGIDVTDVSHVVNFDLPDLPENYIHRIGRTGRADREGIAVSFITESAREAQE 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---E 414
            + +  N  +   P P              ++ +  D +  DEK  V +      P   E
Sbjct: 357 AIEQLMNQPIPMLPLP--------------ENLVISDELTDDEKPKVHMKFIDVKPPKRE 402

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            +   F         A  +   V      ++     R  K  GG +   K
Sbjct: 403 DVGPAF-----HEKSAKNQKVNVRRNIAEEKMLKYGRPIKRVGGKKKRDK 447


>gi|146292357|ref|YP_001182781.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145564047|gb|ABP74982.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 481

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 184/372 (49%), Gaps = 6/372 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE   +   I  A++E GY  LT VQE ++      KD++  AQTG+GKT AF L +
Sbjct: 1   MK-FETLGLSSPILNAITECGYQQLTQVQEKVIPLAFEGKDIMACAQTGTGKTAAFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L AE         P+  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEKLAAEILVNDDNDKPILRALVMTPTRELAIQVCDNIQKYSQFLPLKTIAVYGGANMNP 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLD+GF  DIE +    
Sbjct: 120 QRKGVEQGVDILVATPGRLFDIIGQFQLDLSSVTTLVIDEADRMLDMGFVRDIEKVKRLI 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + ++FSAT S A+  LA+    +  +    ++    S +      V    +   + 
Sbjct: 180 APVHQTMLFSATYSDAVKQLAQKM-LNEPQWVNVADTTTASTVVQEVYRVDKRRKAELLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+ S     + L           G+ +Q  R+  L+  + G+ R
Sbjct: 239 ELVGRNNWRQVLVFASTKESAEHLLQELKLDGIAAGVFHGDKTQGARNRVLEDFKLGKLR 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +  +     
Sbjct: 299 VLVATDVAARGLDIQALPLVINLELPFFAEDYIHRIGRTGRAGLAGRAISFVSPSDDEML 358

Query: 357 ERLFREANVSVV 368
             +       + 
Sbjct: 359 AEIEALIEQKLP 370


>gi|262170498|ref|ZP_06038176.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
 gi|261891574|gb|EEY37560.1| ATP-dependent RNA helicase DbpA [Vibrio mimicus MB-451]
          Length = 460

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPVA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPVAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +    IG I + P  ++V V     
Sbjct: 402 DILGALTSDGELTAAQIGKINLFPMRSYVAVEKKIA 437


>gi|258625772|ref|ZP_05720651.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
 gi|258582010|gb|EEW06880.1| ATP-dependent RNA helicase [Vibrio mimicus VM603]
          Length = 460

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 131/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRTIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPTQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + +A+ +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNAMMIKVAATHDTSSIRQYFYKVDGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPVA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPVAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +    IG I + P  ++V V     
Sbjct: 402 DILGALTSDGELTAVQIGKINLFPMRSYVAVEKKIA 437


>gi|309266557|ref|XP_003086787.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Mus
           musculus]
 gi|309269288|ref|XP_003084847.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like isoform 2
           [Mus musculus]
 gi|148694445|gb|EDL26392.1| mCG15236 [Mus musculus]
          Length = 620

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 193/393 (49%), Gaps = 9/393 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++ P+ + E +   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 221 FQSYPE-VMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 279

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E           V V  GG    +  +D+  
Sbjct: 280 SQP--LEQRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGGDRDGQI-QDVSK 336

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 337 GVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 396

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I   L   
Sbjct: 397 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENM 456

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 457 SPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIAT 516

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R A     
Sbjct: 517 DLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRVATELIN 576

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +   AN ++  E     E  +    +R ++  +
Sbjct: 577 ILERANQNIPEELVLMAERYKANKLKREMEKKM 609


>gi|115637407|ref|XP_796437.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
 gi|115949877|ref|XP_001190893.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 41,
           partial [Strongylocentrotus purpuratus]
          Length = 603

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 125/400 (31%), Positives = 196/400 (49%), Gaps = 19/400 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P+ I   L ++G    T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 161 IKHFKEMKFPKSIIYGLKKKGITKPTPIQIQGLPVILEGRDMIGIAFTGSGKTLVFSLPI 220

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIG 110
               L +  R  F     P  L I P+RELA Q    +              +   +CIG
Sbjct: 221 VMFALEQEKRMPFIKNEGPYGLIICPSRELARQTHDGIMHFIKCLEADNQPTLRSMLCIG 280

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GVSV  +   +++G HIVV TPGRL D +  K   +S  + + LDEAD M+DLGF +DI 
Sbjct: 281 GVSVKEQMDAVRSGVHIVVATPGRLIDMLNKKCFTLSVCRYLCLDEADRMIDLGFEEDIR 340

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            IL     +R+ L+FSAT+   I   AK+     V VN+        D+      V    
Sbjct: 341 TILTYFKSQRQTLLFSATMPKKIQNFAKSALVRPVTVNVGRAGAASLDVIQEVEYVKQEA 400

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ +++  
Sbjct: 401 KMVYLLECLQKAPPP-VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTKSIEQF 459

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R     V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   I  
Sbjct: 460 RAREKDVLVATDVASKGLDFPDIQHVINYDMPEDIENYVHRIGRTGRCGKTGIATTFINK 519

Query: 349 --PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
              +++ R  + L  EA   +     P +EAI + + + I
Sbjct: 520 ACDESVLRDLKHLLIEAKQKLP----PVLEAIEDENEEYI 555


>gi|226943135|ref|YP_002798208.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
 gi|226718062|gb|ACO77233.1| DEAD/DEAH box ATP-dependent RNA helicase [Azotobacter vinelandii
           DJ]
          Length = 434

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 186/365 (50%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L   GY+  T VQ   +   L  +D+LV+AQTGSGKT  F L +   L  E   
Sbjct: 10  KPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVLQRLTLEGSP 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            + A++  AL + PTRELA QV   +     +  +  AV  GGVS++ +   L+ G  ++
Sbjct: 70  AA-ANSVRALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMMLLRPGIDVL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +    L+ +VLDEAD MLDLGF  ++E +    P +R+ L+ SAT
Sbjct: 129 VATPGRLLDLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQRQTLLCSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  +A    +D + + I++ N     +    + V    +    +++L     +  +
Sbjct: 189 FSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPVDKKRKAELFLHLLERERWEQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V R  + L +  ++  A+ G+L Q  R  AL+  +    +V +ATDVAARG+
Sbjct: 249 VFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQVLVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L LV++ +L   PE  +HR GRTGRAG  G ++ ++  +   +   +       + 
Sbjct: 309 DIQGLPLVVNLDLPVAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLAAIEALIRQLLP 368

Query: 369 WEPAP 373
               P
Sbjct: 369 RREEP 373


>gi|293391078|ref|ZP_06635412.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951612|gb|EFE01731.1| ATP-dependent RNA helicase RhlB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 418

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 197/385 (51%), Gaps = 12/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL+++G+   T +Q   L   LR+KDV   AQTG+GKT+AF  AL   LL   
Sbjct: 16  LHPLVLQALNDKGFDFCTPIQALSLPITLRDKDVAGQAQTGTGKTIAFLTALFHHLLTY- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +  + P AL +APTRELAVQ+  + +     T    A+  GG    ++ + ++NG  
Sbjct: 75  PKQTEVNQPRALILAPTRELAVQIEHDAQIFLKTTKFKTALAYGGDGYDKQLKAIENGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           +++GT GR+ D++R   + +  ++ VVLDEAD M DLGF  DI +       P++R  ++
Sbjct: 135 VLIGTTGRVIDYVRQGVIRLDQIQTVVLDEADRMFDLGFIRDIRYLLRKCPPPQQRLTML 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA         V I  E +    I       +  D+   ++ +L     
Sbjct: 195 FSATLSYKVRELAFEDMNSPEYVEIEPEQKTGQQIKEELFYPSNRDKIPLLLTLLEEEWP 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDVA
Sbjct: 255 ERCIVFANTKHKCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ + ++  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 315 ARGLHIAEVTHVFNYDLPDDREDYVHRIGRTGRAGESGISISFACEQYAMNLPAIEEYIG 374

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD 389
            S+          + + D   +LQD
Sbjct: 375 HSIT---------VSQYDPNALLQD 390


>gi|170105186|ref|XP_001883806.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641441|gb|EDR05702.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 662

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 196/384 (51%), Gaps = 22/384 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S   AE 
Sbjct: 183 LDPVLLENIGFAMYTTPTPVQKYSIPIVAGGRDLMACAQTGSGKTGGFLFPILSASFAEG 242

Query: 67  DRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            R  PA +            P AL +APTREL  Q+  E      ++ V  AV  GG  +
Sbjct: 243 PRPPPAQSSAGGYGRARKAYPTALILAPTRELVSQIHDEARKFAYRSWVRPAVVYGGADI 302

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-- 172
           +++ R ++ G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I  
Sbjct: 303 NQQLRLIERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRRIVQ 362

Query: 173 --LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                S   R+ LMFSAT    I  LAK++ KD V +++        +I  +   V   D
Sbjct: 363 GEDMPSTADRQTLMFSATFPRDIQMLAKDFLKDYVFLSVGRVGSTSENITQKIEYVEDLD 422

Query: 231 RDNAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           + + +++IL     ++    +VF  T+      +  L  +     ++ G+ +Q+ER  AL
Sbjct: 423 KRSVLLDILASQPKEDLGLTLVFVETKRMADMLSDFLMGNNLPATSIHGDRTQREREMAL 482

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           Q  R GR  + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G+S   
Sbjct: 483 QTFRTGRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVSTAF 542

Query: 348 I---PQNMQRRAERLFREANVSVV 368
                +N+ R    L REAN  + 
Sbjct: 543 FNRGNKNIVRDLVELLREANQEIP 566


>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
 gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
          Length = 1791

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/358 (30%), Positives = 177/358 (49%), Gaps = 6/358 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   +  ++   + + GY   T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 181 IRSFEGAQLRSIVLNNVIKSGYKVPTPIQKVSMPVISEGRDLMACAQTGSGKTAAFLLPM 240

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL E D       P A+ ++PTRELA+Q+  E       + + +++  GG SV  + 
Sbjct: 241 ICKLLDEVDNVEIGK-PQAVIVSPTRELAIQIFHEARKFAFTSYLKISIVYGGTSVKYQN 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G H+++ TPGRL D +    +     + VVLDEAD MLD+GF D +  I+     
Sbjct: 300 ECITKGCHLLIATPGRLLDFVDRTFITFEATRFVVLDEADRMLDMGFADSMRKIMQHQTM 359

Query: 179 KRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +      MFSAT    I  +A  +  + + V I       SD+      +   D+ +  +
Sbjct: 360 RPEHQTLMFSATFPEEIQRMAGEFLNNYIFVAIGVVGGACSDVQQTFHELKKFDKRSK-L 418

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +   GA   IVF  T+        +L+E  F   ++ G+  Q +R  AL+  + G  +
Sbjct: 419 MDILQEGADGTIVFVETKRGADFLASILSETKFPTTSIHGDRLQSQREQALRDFKTGHMK 478

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           V IAT VAARG+D+ +++ VI+ ++    ++ +HR GRTGR G +G +      N  R
Sbjct: 479 VLIATSVAARGLDIKNVKHVINYDMPKTVDDYVHRIGRTGRVGNRGRATSFFDPNQDR 536


>gi|47937760|gb|AAH72323.1| Ddx49-A-prov protein [Xenopus laevis]
          Length = 429

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/417 (27%), Positives = 186/417 (44%), Gaps = 16/417 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +   + +  S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +   L  
Sbjct: 13  SGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPILQKLSE 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +            L + PTRELA Q+  +   L    G+   + IGG+ +  +  +L   
Sbjct: 73  DP------FGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIIGGMDMVAQALELSRK 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            HIV+ TPGRL DHIR            L     D   E     F  D++ IL++ P +R
Sbjct: 127 PHIVIATPGRLADHIRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTQDLQVILEAVPAQR 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--- 237
           + L+FSAT++  +  L              SE R    +D R +LV    +D  +V    
Sbjct: 187 QTLLFSATLTDTLQELKTVAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAYLVYLIQ 246

Query: 238 -ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                H   + ++F +T  +      +L E  F  VAL   + Q++R  AL   +    +
Sbjct: 247 KFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKFKSSVFK 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q      
Sbjct: 307 ILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQYDIHLV 366

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAKH 411
             +  + N+ +        E ++      +   +  + L+    DEKK        +
Sbjct: 367 HAIEGQINMKLEEFKVKENEVLKILTQVNVARRECEIKLECTDFDEKKRDKQEETAY 423


>gi|330929272|ref|XP_003302577.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
 gi|311321983|gb|EFQ89342.1| hypothetical protein PTT_14452 [Pyrenophora teres f. teres 0-1]
          Length = 599

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 191/386 (49%), Gaps = 21/386 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +   GY   T VQ+  +   +  +D++  AQTGSGKT  F   + + 
Sbjct: 198 FTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQ 257

Query: 62  LLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                    P  A           P +L +APTREL  Q+  E      ++ V   V  G
Sbjct: 258 AFQNGPSPPPQQAQGGYGRQRKAYPTSLVLAPTRELVSQIFDEARKFAYRSWVRPCVVYG 317

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  +  + R ++ G  ++V TPGRL D I    ++++ +K +VLDEAD MLD+GF   I 
Sbjct: 318 GADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQIR 377

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I           R+ LMFSAT    I  LA+++ KD + +++        +I  +   V
Sbjct: 378 RIVEGEDMPPTAGRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKIEYV 437

Query: 227 ALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              D+ + +++IL  H   N  +VF  T+      +  L    F   ++ G+ +Q+ER  
Sbjct: 438 EDVDKRSVLLDILHTHDPTNLTLVFVETKRMADSLSDFLINQGFPATSIHGDRTQREREK 497

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+M R+GR  + +AT VAARG+D+P ++ V++ +L ++ ++ +HR GRTGRAG  G++ 
Sbjct: 498 ALEMFRNGRCPILVATAVAARGLDIPHVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIAT 557

Query: 346 FVIPQNMQ---RRAERLFREANVSVV 368
               +  +   R    L +EAN  V 
Sbjct: 558 AFFNRGNRGVVRDLLELLKEANQEVP 583


>gi|296113215|ref|YP_003627153.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|295920909|gb|ADG61260.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis RH4]
 gi|326560208|gb|EGE10596.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 7169]
 gi|326562767|gb|EGE13063.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 103P14B1]
 gi|326567877|gb|EGE17978.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 12P80B1]
 gi|326570281|gb|EGE20326.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC8]
 gi|326573316|gb|EGE23284.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis 101P30B1]
 gi|326576868|gb|EGE26774.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis O35E]
          Length = 391

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 189/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +LL    + D       P AL +APTRELA Q+  +   L   + +      GG    
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFD 125

Query: 116 RERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 126 KQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVR 185

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++ 
Sbjct: 186 HMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKT 245

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +A+  IL     K  I+F + +  V R    L  H      LSG+++QQ+R   LQ  +D
Sbjct: 246 SALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKV-TMLSGDVAQQKRERYLQRFKD 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N 
Sbjct: 305 GEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEND 364

Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377
                 L R  +          ++ 
Sbjct: 365 AFNLPALERHIDQKFKLNQFEFLDE 389


>gi|289740253|gb|ADD18874.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
          Length = 692

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 193/382 (50%), Gaps = 6/382 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + + ++++G+   + +Q       L+ +D++  AQTG+GKT+AF L     +  ++  
Sbjct: 285 PDLLDEVTKQGFQTPSPIQSQAWPILLKGEDMIGIAQTGTGKTLAFLLPALIHIEYQSIP 344

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            S    P  L +APTRELA+Q+ +E+   Y+  G+      GG + + + +++  G  ++
Sbjct: 345 RSQRGGPNVLILAPTRELALQIEKEVNK-YSFRGIKAVCIYGGGNRNDQIQNVGRGVEVI 403

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D ++   ++++ +  +VLDEAD MLD+GF   I  +L      R+ +M SAT
Sbjct: 404 ICTPGRLNDLVQANVIDVTTVTYLVLDEADRMLDMGFEPQIRKVLLDIRPDRQTIMTSAT 463

Query: 189 ISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             P +  LA++Y  + ++V + S +      +     +V   D+   I   ++     + 
Sbjct: 464 WPPGVRRLAQSYMSNPIQVCVGSLDLAATHSVRQVVEVVEEDDKFYMIKKFIKNMQPDDK 523

Query: 248 -IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC  +      +  L    F   A+ G   Q +R  A+  +  G  R+ IATDVA+R
Sbjct: 524 LIVFCGKKVRADDLSSDLTLDGFLCQAIHGSRDQADREQAIADITSGDVRILIATDVASR 583

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA---ERLFREA 363
           G+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  + ++    A    ++  EA
Sbjct: 584 GLDIDDITHVINFDFPRNIEEYVHRVGRTGRAGRTGTSISYLTRSDWAMAPELIKIMEEA 643

Query: 364 NVSVVWEPAPSVEAIRERDAQR 385
           +  V  E     E   +   +R
Sbjct: 644 DQQVPDELIDMAERYNKMKERR 665


>gi|255088653|ref|XP_002506249.1| predicted protein [Micromonas sp. RCC299]
 gi|226521520|gb|ACO67507.1| predicted protein [Micromonas sp. RCC299]
          Length = 1063

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 184/372 (49%), Gaps = 7/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E +   G+     +Q   L   +  +D +  A+TGSGKT+++ L +   +  + 
Sbjct: 403 LSNRVMELIRRSGFDKPMPIQCQALPVIMSGRDCIGVAKTGSGKTLSYVLPMLRHVKDQR 462

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ + + PTREL  Q+G++ +      G+V     GG  V  +  +L+ G  
Sbjct: 463 P-IESGDGPIGMIMGPTRELVTQIGKDCKKFGRAAGLVAVSVYGGSGVATQIGELKRGCE 521

Query: 127 IVVGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV  TPGR+        G+  N+  +  +VLDEAD M D+GF   I  I+++    R+ +
Sbjct: 522 IVACTPGRMIDVLTTGAGRITNLRRVTYMVLDEADRMFDMGFEPQITRIMNNLRPDRQTV 581

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT   A+  LA++   + V + +   +  +SDI+    + A  DR   ++ +L    
Sbjct: 582 MFSATFPHAMEALARSALTNPVEIQVGGRSVVNSDIEQIVEMRAEEDRFLRVLELLGEWY 641

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   I+F +++    +  + L    +  ++L G   Q +R   +   +     + +AT 
Sbjct: 642 ERGKIIIFVASQDKCDQVFRDLLRSGYPCLSLHGGKEQSDRECTIADFKSDVCNILVATS 701

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +V  I Q  ++ A  L + 
Sbjct: 702 VAARGLDVSGLRLVVNYDTPNHLEDYVHRVGRTGRAGNKGTAVTFISQEEEKFAPDLVKA 761

Query: 363 ANVSVVWEPAPS 374
             ++   +P PS
Sbjct: 762 --MTDAKQPVPS 771


>gi|294875456|ref|XP_002767330.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239868893|gb|EER00048.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 364

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 160/362 (44%), Gaps = 8/362 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   +  +        
Sbjct: 2   GIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEKVNTDIT-----D 56

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA+Q     + L       V V  GG S+  +   L N  HI+VGTPG
Sbjct: 57  GIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRLYNTVHILVGTPG 116

Query: 134 RLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           R+ D       +        V+DEAD++L   F+  +E ++   PK++R ++  +   P 
Sbjct: 117 RVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEKRQILMFSATFPV 176

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
                KN            E      +      V    + + +  +        AI+FC+
Sbjct: 177 TILDFKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFSKLTINQAIIFCN 236

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   V    K + E  F    +   + Q  R+      R+G  R  +++D+  RGID+ +
Sbjct: 237 SVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVSSDLFTRGIDIEN 296

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +VI+ +   N E  LHR GR+GR G  G+++ ++  + +    R+  E    +  +P 
Sbjct: 297 VNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIEHELGTEI--KPI 354

Query: 373 PS 374
           PS
Sbjct: 355 PS 356


>gi|220678758|emb|CAX13889.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
 gi|220678952|emb|CAX13571.1| novel protein similar to vertebrate DEAD (Asp-Glu-Ala-Asp) box
           polypeptide 43 (DDX43) [Danio rerio]
          Length = 719

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 181/387 (46%), Gaps = 7/387 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P  I E +   G+   T +Q       L   D++  AQTG+GKT+A+ L     + 
Sbjct: 283 FAHYP-GIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMD 341

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +       + P  L + PTRELA+Q+  E    Y+  G       GG   + + + + +
Sbjct: 342 GQPMPRDKRNGPGMLVLTPTRELALQIEAECNK-YSYKGFKSICIYGGGDRNAQIKVVTS 400

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D    + +N+  +  +VLDEAD MLD+GF   I  I+      R+ +
Sbjct: 401 GVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTV 460

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNAIVNILRY 241
           M SAT  P +  LAK+Y KD + V + + +    +   +    +     +D     I R 
Sbjct: 461 MTSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNTVQQTVLFVQEDEKKDYVFDFIHRM 520

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F   +      +  L      V +L G+  Q +R  ALQ  +DGR R+ +AT
Sbjct: 521 EPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVAT 580

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G SV ++ +   R A     
Sbjct: 581 DLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELIT 640

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +   +   V  E     E   +   ++
Sbjct: 641 ILERSGQDVPEELVLMAERYEKHRREK 667


>gi|68444623|ref|XP_684923.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 isoform 1
           [Danio rerio]
          Length = 484

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 179/374 (47%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 99  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 158

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +  + D         A+ I PTRELA+QV +  ++      GV V    GG ++  +   
Sbjct: 159 IDLKKDSI------QAVVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMR 212

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H+V+ TPGR+ D I+     +  ++ +VLDEAD++L   F   +E IL S  K+R
Sbjct: 213 LDETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDEADKLLSQDFVQMMEEILSSLSKQR 272

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 273 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 331

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 332 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 391

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 392 TDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIE 451

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 452 EQLGTEI--KPIPS 463


>gi|50295040|ref|XP_449931.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608117|sp|Q6FIL3|HAS1_CANGA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49529245|emb|CAG62911.1| unnamed protein product [Candida glabrata]
          Length = 494

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 194/418 (46%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q    A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L     L   
Sbjct: 35  NLSQPTMRAIEKMGFSKMTPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPTIELL--H 92

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + I PTRELA+Q+   +  L         + IGG +  +E   L  G 
Sbjct: 93  SLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGV 152

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 153 NLLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNEDRQSM 212

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI----DYRAVLVALSDRDNAIVNILR 240
             +                   + I   +   S      +   V+     R   + + L+
Sbjct: 213 LFSATQTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYVVCESDKRFLLLFSFLK 272

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + I 
Sbjct: 273 RNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILIC 332

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  N      R 
Sbjct: 333 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNGKGKSLMFLIPNELGFL-RY 391

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + A V +     P+ + A  +   +++++   +L     D  +      A H  + +
Sbjct: 392 LKAAKVPLNEYEFPTNKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTV 449


>gi|257456960|ref|ZP_05622141.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
 gi|257445669|gb|EEV20731.1| ATP-dependent RNA helicase DbpA [Treponema vincentii ATCC 35580]
          Length = 605

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 138/478 (28%), Positives = 227/478 (47%), Gaps = 17/478 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L E GY+  T VQE + +  +   D+ V +QTG+GKT A+ + L   +LA+
Sbjct: 18  NLDSHLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLMQRMLAQ 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELAVQV  E   L   TG+  A   GGV   ++   L+NG 
Sbjct: 78  GTESRRP----ALILVPTRELAVQVEEEAHKLGKYTGLRAASFYGGVGYQQQEEALKNGV 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            +++GTPGR+ D  + K + + H+  +V+DEAD M D+GF  D+  +L    K  +R+ +
Sbjct: 134 DLIIGTPGRVIDLEKSKTMKLKHVGFLVIDEADRMFDMGFYPDLRSLLSVLSKAEERQTM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  +  LA  Y  DA  + I ++N    +I+ +   VA   + + ++ ILR   
Sbjct: 194 LFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAADQKMSLLLGILRNEK 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +N I+FC+T+ +     K L  + +    L G+L Q +R + +   + G+    +ATDV
Sbjct: 254 PENTIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLTCLVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR-- 361
           AARGID+ DL +VI+ +L +  EN +HR GRT RAG+ G +  +  +        + +  
Sbjct: 314 AARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLPDIEKYI 373

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           EA + VV    P  E   +    R     + LD    DE++           EK      
Sbjct: 374 EAKIPVV---IPGEEDFEK---DRSADQYIRLDRDSADEERGGRFGRKPRPGEKSRREDK 427

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG---GSRDNFKGSSWFSLSVGSK 476
              R    A            +   + + +  +      G     +  +++    G K
Sbjct: 428 DARRGTKTARPASRTADSKRKKKGTQGEDKTDRKSADSLGGLSFEERMAYYKKQYGKK 485


>gi|24644483|ref|NP_731032.1| Rm62, isoform E [Drosophila melanogaster]
 gi|320542448|ref|NP_001189182.1| Rm62, isoform I [Drosophila melanogaster]
 gi|10727150|gb|AAF51927.2| Rm62, isoform E [Drosophila melanogaster]
 gi|257286223|gb|ACV53058.1| LP18603p [Drosophila melanogaster]
 gi|318068719|gb|ADV37273.1| Rm62, isoform I [Drosophila melanogaster]
          Length = 578

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 146 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 205

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 206 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 264

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 265 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 324

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 325 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 384

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 385 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 444

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 445 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 504

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 505 VDVLREANQEI 515


>gi|281203514|gb|EFA77714.1| DEAD/DEAH box helicase domain-containing protein [Polysphondylium
           pallidum PN500]
          Length = 400

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 193/375 (51%), Gaps = 12/375 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  ++P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + +
Sbjct: 27  IDSFDAMDLPKDLLRGVYSYGFEKPSAIQQRAIMPLAKGLDIIAQAQSGTGKTATFTIGI 86

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S +     +        AL IAPTRELA Q+ + +  L     +    CIGG  V  + 
Sbjct: 87  LSQININLMK------CQALIIAPTRELAQQIQKVVTSLGEYLKIKCYACIGGTRVSDDV 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++LQNG HIVVGTPGR+ + +    +    +K  VLDEADEML  GF+D I  I    P 
Sbjct: 141 QNLQNGVHIVVGTPGRVYEMLSRGVITRESVKIFVLDEADEMLSRGFKDQIYEIFRLLPL 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIV 236
             ++ +FSAT++    ++   + K+ V++ +  +      I    V    A   + + + 
Sbjct: 201 DIQVGLFSATMTEETLSITHKFMKEPVKILVKKDELTLEGIRQFYVNVGPAEQGKFDVLT 260

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        +++FC+TR  V   T  + E  F V +  G+   ++R   LQ  R G  R
Sbjct: 261 DLYETLSITQSVIFCNTRRKVDWLTTKMTEQQFTVSSTHGDQ--KDRDGILQSFRSGTTR 318

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I TD+ ARGID+  + LVI+ +L  N EN +HR GR+GR GRKG+++  I QN Q + 
Sbjct: 319 VLITTDLLARGIDVQQVSLVINFDLPLNLENYIHRIGRSGRFGRKGVAINFITQNEQEKI 378

Query: 357 ERLFREANVSVVWEP 371
           + L    N  +   P
Sbjct: 379 QDLCSHYNTFIQEMP 393


>gi|147834872|emb|CAN70196.1| hypothetical protein VITISV_040309 [Vitis vinifera]
          Length = 410

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/360 (31%), Positives = 185/360 (51%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 47  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R L +G H
Sbjct: 105 ----GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 161 VVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 221 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAIT 280

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 281 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 340

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + R  NV
Sbjct: 341 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNV 400


>gi|15221761|ref|NP_175829.1| EIF4A-2; ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|1170505|sp|P41377|IF4A2_ARATH RecName: Full=Eukaryotic initiation factor 4A-2; Short=eIF-4A-2;
           AltName: Full=ATP-dependent RNA helicase eIF4A-2;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 19
 gi|4585969|gb|AAD25605.1|AC005287_7 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|14423372|gb|AAK62368.1|AF386923_1 Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|16226681|gb|AAL16231.1|AF428462_1 At1g54270/F20D21_52 [Arabidopsis thaliana]
 gi|16556|emb|CAA46189.1| eukaryotic translation initiation factor 4A-2 [Arabidopsis
           thaliana]
 gi|21593545|gb|AAM65512.1| eukaryotic translation initiation factor 4A, putative [Arabidopsis
           thaliana]
 gi|30725682|gb|AAP37863.1| At1g54270 [Arabidopsis thaliana]
 gi|110740791|dbj|BAE98493.1| Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
 gi|332194952|gb|AEE33073.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 412

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 185/366 (50%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYA- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + QR    + +  NV
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNV 399

Query: 366 SVVWEP 371
            V   P
Sbjct: 400 VVEELP 405


>gi|224139612|ref|XP_002323192.1| predicted protein [Populus trichocarpa]
 gi|222867822|gb|EEF04953.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 132/373 (35%), Positives = 204/373 (54%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+++G   L  +Q A+L P ++ KD+   A+TG+GKT+AFG+ +   +L  N
Sbjct: 49  ISQEIVGALAKKGITKLFPIQRAVLEPAMQGKDMFGRARTGTGKTLAFGIPILDKILQFN 108

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PL + +APTRELA QV +E         +      GG  + ++ RDL+ G  
Sbjct: 109 AQHGRGRYPLGIVMAPTRELARQVEKEFREAAPSLDITC--LYGGTPISQQMRDLEYGVD 166

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++   L +S ++ VVLDEAD+ML +GF DDIE IL S P+KR  + FS
Sbjct: 167 VVVGTPGRIIDLMKRGSLVLSEVQHVVLDEADQMLGVGFVDDIETILSSVPQKRHSMCFS 226

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---ILRYHG 243
           AT+   I  L + Y KD + +++  ++ +          +A      A +    I  +  
Sbjct: 227 ATMPSWIRELVRKYLKDPLTIDLVGDSDKKLAEGITLYSIASDLYAKASILGPLITEHAK 286

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +A+      AL G++SQ  R   L   R+G   + +ATDV
Sbjct: 287 GGKCIVFTETKRDADRLAYAMAKTYKC-EALHGDISQSVRERTLSGFREGHFNILVATDV 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH  L    E  +HRSGRTGRAG+KG ++ +  Q+  R+   + R+ 
Sbjct: 346 AARGLDVPNVDLIIHYALPRCSETFVHRSGRTGRAGKKGTAILIYTQDESRQVRIIERDT 405

Query: 364 NVSVVWEPAPSVE 376
               +  P  +V+
Sbjct: 406 GCKFLELPKIAVD 418


>gi|120436503|ref|YP_862189.1| ATP-dependent RNA helicase [Gramella forsetii KT0803]
 gi|117578653|emb|CAL67122.1| RhlE-like DEAD box family ATP-dependent RNA helicase [Gramella
           forsetii KT0803]
          Length = 455

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 121/452 (26%), Positives = 200/452 (44%), Gaps = 14/452 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL +  +   T +QE   +  +  +DV+  AQTG+GKT A+ L L   L   
Sbjct: 15  NLNTPLRNALEDLNFQTPTPIQEQAFSSIMSGRDVVGIAQTGTGKTFAYLLPLLRML--- 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV  E+E L     + VA   GGV+++ + +DL  G 
Sbjct: 72  --KYSEQKNPRILIMVPTRELVVQVVEEIEKLAKYINLRVAGVYGGVNINTQHQDLMQGL 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TP RL D +  + + +  ++  V+DE D MLDLGF+  +  I++  PK R+ +MF
Sbjct: 130 DIVVATPRRLYDLVLRRAVQLKSIQKFVIDEVDVMLDLGFKFQVNNIIELLPKNRQSIMF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDN--AIVNILRYH 242
           SAT++  +  +     K   ++++A       +ID R   +     + N    +      
Sbjct: 190 SATMTETVEEMIDTNFKAPEKISVAVSGTPLENIDQRGYKIPNFYTKANLLKHLLADTET 249

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I     R +   +  +  E       +    SQ  R  ++    +G +R+ IATD
Sbjct: 250 YQKVLIFIGDKRIADRLYENLGEEFPGDTSLVHTGKSQNYRLKSVGDFDEGLSRILIATD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ ++  V++ +    PEN +HR GRTGRA +KG S+    +  Q   + +   
Sbjct: 310 VMARGLDIENVSHVVNFDTPQYPENYMHRIGRTGRAEKKGQSLLFTTEAEQEYLDAIEEL 369

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
               V     P  E + E   + I ++      I        +   A H+ +       +
Sbjct: 370 MQTEVPKYDLP--EEV-EIATELIPEEKPRAIEINNPHNVTEEAGPAFHEKKD---KNKK 423

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++  G    E          R     + R  K
Sbjct: 424 VNLGGSYRREIAQKYKKPKTRGDKNANRRRKK 455


>gi|117620754|ref|YP_854622.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|189040024|sp|A0KEG9|RHLB_AERHH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|117562161|gb|ABK39109.1| ATP-dependent RNA helicase RhlB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 429

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTLAFLAATFNYLLTHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +    + P A+ +APTRELAVQ+  + E + A TG+ + +  GG    ++   L+ G 
Sbjct: 76  LTKPRLINQPRAIIMAPTRELAVQIYNDAESMSASTGLKLGLAYGGEGYDKQLAVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+    P       +
Sbjct: 136 DILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V I  E      I       +  D+   +++++    
Sbjct: 196 LFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+ +  ++       +    
Sbjct: 316 AARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           +      P P    + + D + +L D
Sbjct: 376 H-----HPIP----VSKYDREALLDD 392


>gi|6323947|ref|NP_014017.1| Has1p [Saccharomyces cerevisiae S288c]
 gi|2500537|sp|Q03532|HAS1_YEAST RecName: Full=ATP-dependent RNA helicase HAS1; AltName:
           Full=Helicase associated with SET1 protein 1
 gi|530347|emb|CAA56799.1| RNA helicase [Saccharomyces cerevisiae]
 gi|151945998|gb|EDN64230.1| helicase associated with set1 [Saccharomyces cerevisiae YJM789]
 gi|190408516|gb|EDV11781.1| RNA-dependent helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207342060|gb|EDZ69940.1| YMR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256270688|gb|EEU05851.1| Has1p [Saccharomyces cerevisiae JAY291]
 gi|259148878|emb|CAY82123.1| Has1p [Saccharomyces cerevisiae EC1118]
 gi|285814296|tpg|DAA10191.1| TPA: Has1p [Saccharomyces cerevisiae S288c]
 gi|323346981|gb|EGA81258.1| Has1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323353213|gb|EGA85513.1| Has1p [Saccharomyces cerevisiae VL3]
          Length = 505

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 215/468 (45%), Gaps = 17/468 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   Q   +A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF +  
Sbjct: 41  VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPA 100

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + +F P +    + I PTRELA+Q+      L         + IGG +  +E 
Sbjct: 101 IELL--HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G ++++ TPGRL DH++        +LKA+++DEAD +L++GF D++  I+   P
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP 218

Query: 178 KKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            + R  M  +            ++       + V   ++N     ++   V+     R  
Sbjct: 219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFL 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + 
Sbjct: 279 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 338

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNM 352
              + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  N 
Sbjct: 339 ERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + + V +     P  + A  +   +++++   +L     D  +      A H
Sbjct: 399 LGFL-RYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASH 457

Query: 412 DPEKIAA----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             + +         ++ ++ G   P ++      SG+       +  K
Sbjct: 458 SLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPNTKRRKTHK 505


>gi|170782265|ref|YP_001710598.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169156834|emb|CAQ02001.1| putative ATP-dependent RNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 520

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 11/377 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI + + +AL++ G +    +QE  +   L  +D++  A+TG+GKT  FGL L 
Sbjct: 1   MTFTELNIDEDMVQALADHGILEPFPIQEQTIPLALSGQDIIGQAKTGTGKTFGFGLPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       +P     AL + PTRELAVQV  +L+         V    GG +   +  
Sbjct: 61  QRL-----GLTPEPGVQALVVVPTRELAVQVTEDLQIATKHRATTVVSIYGGKAYEGQIE 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GA IVVGTPGRL D +  + L++ +++ +VLDEAD+MLDLGF  DIE +   +P  
Sbjct: 116 QLKAGAQIVVGTPGRLLDLVGQRLLSLKYVREMVLDEADKMLDLGFLSDIEKLFAQTPAV 175

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R  ++FSAT+   I         +   +R     E    ++I +        D+D  I  
Sbjct: 176 RHTMLFSATMPGPIVALARRFMTKPIHIRATDPDEGLMQANIRHLVYRAHNMDKDEVIGR 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++F  T+ + +R  + L +  F   A+ G+L+Q++R  A+   + G+  +
Sbjct: 236 ILQAEGRGKTVIFTRTKRAAARLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDI 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+  +  + +  LHR GRTGRAG+ G++V  +  +   +  
Sbjct: 296 LIATDVAARGIDVLDVTHVINHTIPEDDKAYLHRVGRTGRAGKTGIAVTFVDWDDLHKWA 355

Query: 358 RLFREANVSVVWEPAPS 374
            + R        +P P+
Sbjct: 356 LINRALEFG---QPEPT 369


>gi|188529679|gb|ACD62526.1| Vasa short form [Silurus meridionalis]
          Length = 641

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 202 IMTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPI 261

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+ +     +FS    P  + +APTREL  Q+  E       T V   V  GG S  
Sbjct: 262 LQQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTG 321

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
              R++  G +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF   +  +++S
Sbjct: 322 FTIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNS 381

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSD 230
                +    +   S       +    D ++V+             SDI+   + V    
Sbjct: 382 PGMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYS 441

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +L+  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 442 KREQLLELLKATGTERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDF 501

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+  ++ VI+ +L    +  +HR GRTGR G  G +V     
Sbjct: 502 RTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFDP 561

Query: 351 N----MQRRAERLFREANVSVV 368
                + R   ++   A   V 
Sbjct: 562 ESDTPLARALVKVLSGAKQEVP 583


>gi|188529677|gb|ACD62525.1| Vasa [Silurus meridionalis]
          Length = 662

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 223 IMTFEEAQLCETLNRNVAKSGYVKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPI 282

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+ +     +FS    P  + +APTREL  Q+  E       T V   V  GG S  
Sbjct: 283 LQQLMNDGVATSKFSEVQEPEVIIVAPTRELISQIYLEARKFAYGTCVRPVVVYGGTSTG 342

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
              R++  G +++ GTPGRL D I    + +S ++ +VLDEAD MLD+GF   +  +++S
Sbjct: 343 FTIREVLKGCNVLCGTPGRLLDIIGRGEVGLSKVRYLVLDEADRMLDMGFEPTMRKLVNS 402

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSD 230
                +    +   S       +    D ++V+             SDI+   + V    
Sbjct: 403 PGMPPKEERQTLMFSATYPEDIQRLASDFLKVDYLFLAVGVVGGACSDIEQNIIQVTRYS 462

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++ +L+  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 463 KREQLLELLKATGTERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALGDF 522

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +AT VAARG+D+  ++ VI+ +L    +  +HR GRTGR G  G +V     
Sbjct: 523 RTGQCPVLVATSVAARGLDIEQVQNVINFDLPKYIDEYVHRIGRTGRCGNTGRAVSFFDP 582

Query: 351 N----MQRRAERLFREANVSVV 368
                + R   ++   A   V 
Sbjct: 583 ESDTPLARALVKVLSGAKQEVP 604


>gi|242047398|ref|XP_002461445.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
 gi|241924822|gb|EER97966.1| hypothetical protein SORBIDRAFT_02g002790 [Sorghum bicolor]
          Length = 602

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 198/368 (53%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L+ N
Sbjct: 93  ISPRIVEKLAARGITKLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSHN 152

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      PLA+ +APTRELA QV +E         +      GGV ++++ R L  G  
Sbjct: 153 EKNGNGRNPLAIVLAPTRELARQVEKEFRESA---PLDTLCVYGGVPINQQMRVLNYGVD 209

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I++  P+ R+ ++FS
Sbjct: 210 IVVGTPGRIIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFS 269

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  ++  Y  D V ++    + +        Y         +      I  +  
Sbjct: 270 ATMPSWIRKISNKYLNDPVIIDLVGDSDQKLPEGISLYSIASDNFGKQSILGPLIKEHAN 329

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R   V+        AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 330 GGKCIVFTQTKRDADRLAYVMGRSYPCQ-ALHGDISQNQRERTLSGFRDGRFNILVATDV 388

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LV+H E+ +  E  +HRSGRT RAG+KG ++ +      R    + ++ 
Sbjct: 389 AARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDI 448

Query: 364 NVSVVWEP 371
                  P
Sbjct: 449 GCRFTELP 456


>gi|221126753|ref|XP_002164824.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222162|emb|CBA31453.1| ATP-independent RNA helicase dbpA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 460

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 142/408 (34%), Positives = 214/408 (52%), Gaps = 14/408 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P        L + G+  +T +Q A L   L  KD++  A+TGSGKT AF L L
Sbjct: 1   MTAFSTLPLAPATLANLQQLGFDAMTPIQAASLPVALAGKDLIAQAKTGSGKTAAFALPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
            + L   N R+    A  A+ + PTRELA QV  E+  L   +  + V    GGV+   +
Sbjct: 61  LAKL---NPRW---FAVQAMVLCPTRELADQVTVEIRRLARAQDNIKVVTLCGGVATRGQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R  L+NGAHIVVGTPGR+ D +  + L +  L  +VLDEAD MLD+GF DDI  +    P
Sbjct: 115 RASLENGAHIVVGTPGRIMDLLEREYLTLEGLNTLVLDEADRMLDMGFFDDIVTVARQCP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT    I  LAK + +D  ++         + I+ R   V    R +A+ +
Sbjct: 175 KERQTLLFSATYPEGIEKLAKQFMQDPQQI-KVEAPVADNTIEQRFFEVDRESRFSAVCS 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL +    + I FC+T+   +     L    F   AL G+L Q+ER   L    +    V
Sbjct: 234 ILNHFRPVSTIAFCNTKQQCNELVDKLVTDGFVAQALHGDLDQRERDQVLAQFANRSCSV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+ +L++VI+ +++ +PE  +HR GRTGRAG KG++V +          
Sbjct: 294 LVATDVASRGLDVKELDIVINVDITPDPEVHVHRIGRTGRAGEKGLAVSLASMREMGAVG 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++ +  N   VW     ++ +    + R+L  P+    I G  K+ + 
Sbjct: 354 KIEQYQNTPSVWHK---LDELTPTGSGRLL-PPMVTVQIAGGRKEKIR 397



 Score = 54.2 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCR-SSG--INRQSIGAIRVQPDLTFVEVS 514
           GS           ++ G K+K     ++  L     G    R+ IG I+V    TFV V+
Sbjct: 375 GSGRLLPPMVTVQIAGGRKEKIRPGDVLGALTNTEGGPAFTREQIGKIQVTEFCTFVGVA 434

Query: 515 ADGV----DLLRRTVKLDKGIQLKYL 536
            D      + L       K ++ + L
Sbjct: 435 RDVAQAACNKLNAGRVKGKSVRARLL 460


>gi|91788228|ref|YP_549180.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91697453|gb|ABE44282.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 422

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 5/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  A+ ++GY   T++Q   +   L  +DV+ SAQTGSGKT AF L +   L   N
Sbjct: 13  LPAFL-RAIGDKGYRAPTAIQSQAIPAILLGRDVVGSAQTGSGKTAAFALPMLQQL--AN 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
                      L + PTRELA QVG  +          V  AV  GGVS++ +  +L+ G
Sbjct: 70  APTGTPRPTRGLILVPTRELAAQVGEAIAGFAKYLPQRVKVAVVFGGVSINPQMMNLRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D +    L IS +  +VLDEAD +LDLGF +++  IL+  P +R+ L 
Sbjct: 130 ADIVVATPGRLLDLLEHNALKISEVSTLVLDEADRLLDLGFGEELGRILELLPPRRQNLF 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PAI  LA++   D +R+ + +      DI  RA+ V  S R   + ++++    
Sbjct: 190 FSATFPPAIEVLAESMLHDPLRIEVQAVPETKPDIAQRAIQVDASRRTQLLRHLVQTEKW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A+VF +T+ +       L +   +     GELSQ +R+  LQ  R    +V +ATDVA
Sbjct: 250 ERALVFVATKHAAEIVADKLRKVHIEAEPFHGELSQGKRTQVLQDFRIKAVQVVVATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + +V++ +L  +  +  HR GRTGRAG  G++V  +    +   + + +   
Sbjct: 310 ARGIDIAQMPVVVNYDLPRSAVDYTHRIGRTGRAGESGLAVSFVSAGTEAHFKLIEKRQG 369

Query: 365 VSVVWEPAPSVEAIR 379
           + V  E     E + 
Sbjct: 370 IKVQREQVEGFEPLE 384


>gi|115454521|ref|NP_001050861.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|75327677|sp|Q7Y183|RH10_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 10
 gi|31126733|gb|AAP44655.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|53370642|gb|AAU89137.1| DEAD/DEAH box helicase domain containing protein [Oryza sativa
           Japonica Group]
 gi|108710302|gb|ABF98097.1| ATP-dependent RNA helicase DDX47, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113549332|dbj|BAF12775.1| Os03g0669000 [Oryza sativa Japonica Group]
 gi|125545183|gb|EAY91322.1| hypothetical protein OsI_12939 [Oryza sativa Indica Group]
 gi|215695397|dbj|BAG90588.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 472

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 207/393 (52%), Gaps = 13/393 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             F  +   P+++  A    G+   T +Q   +   L  +D++   QTGSGKT AF L +
Sbjct: 41  STFAELGVVPELVA-ACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL +        A  A  ++PTRELA Q+G++ E L +  G+   V +GGV   ++ 
Sbjct: 100 IQALLKQ----DKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQA 155

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HIVVGTPGRL DH    KG +++ LK +VLDEAD++L++ F+  ++ IL+  P
Sbjct: 156 VSLAKRPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIP 215

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+RR  +FSAT++  ++ L +   ++ V+V +AS+      +      V    +D  +V+
Sbjct: 216 KERRTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVH 275

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        ++F  T  S       L    F+ +++SG++SQ +R  AL   +     +
Sbjct: 276 VLNELPGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNI 335

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAG  G +V ++ Q      +
Sbjct: 336 LICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAMWFK 395

Query: 358 RLFREANVSVVWEPAPSVE--AIRER--DAQRI 386
            + +     +      + E   +RER  D++RI
Sbjct: 396 MIEKLLGYEIPDRKVDNAEIMILRERISDSKRI 428


>gi|88811449|ref|ZP_01126704.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
 gi|88791338|gb|EAR22450.1| ATP-dependent RNA helicase [Nitrococcus mobilis Nb-231]
          Length = 437

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 190/370 (51%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   + E G+ + T VQ A L   L+  DV   AQTG+GK+ AF LA    L+   
Sbjct: 16  LHESLLLGIKEAGFSHCTPVQAAALPVLLQHHDVAAQAQTGTGKSAAFLLATMHYLMT-T 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL +APTRELA+Q+ R+ E L   TG+  A   GG+    +R +L  G  
Sbjct: 75  PVAENKTGPWALILAPTRELALQIHRDAEKLGYFTGMRCAAIYGGIGYEPQRAELTQGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRMLM 184
           I++GTPGR+ D  + +  ++ +++ VVLDEAD M D+GF  D+ +          R  ++
Sbjct: 135 IIIGTPGRIIDFYKQRVFSLDNIEVVVLDEADRMFDMGFITDVRYLLRRMPPAPDRINML 194

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA  +      + I  E      +      VA +D+   ++ +LR   A
Sbjct: 195 FSATLSERVKELAYEHMNAPETIAIEPEQVTAEKVRQSLYHVASADKIGLLLGVLRQQDA 254

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+    R T  L  + F    +SG++ Q++R   LQ  ++G+  + +ATDVA
Sbjct: 255 TRTLVFVNTKRDAERVTAYLVGNGFDAEVISGDIPQKKREQLLQRFQEGKLPMLVATDVA 314

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  +++ +L  N E+ +HR GRT RAG  G ++    +        +    +
Sbjct: 315 ARGLHIPDVSRIVNYDLPQNAEDYVHRIGRTARAGASGDAISFACEAYVYSLPEIEAYIH 374

Query: 365 VSVVWEPAPS 374
             +  E A S
Sbjct: 375 QKIPAEMASS 384


>gi|300122867|emb|CBK23874.2| unnamed protein product [Blastocystis hominis]
          Length = 394

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   +++Q+  + P ++ +DV+  +Q+G+GKT  F + +   +    
Sbjct: 3   LNPDLLRGIYAYGFEKPSAIQQRAILPIIKGRDVIAQSQSGTGKTGVFCIGVLQNIDPS- 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q  + L  +     V    C+GG S+  + R L  G  
Sbjct: 62  -----LMETQALILSPTRELAEQSQKVLLSIGDCMKVQCHACVGGKSLSDDIRRLDYGVQ 116

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+ D I  + L   ++K +V+DE DEML+ GF++ +  I    P   ++++ S
Sbjct: 117 VVSGTPGRVYDMINRRHLRTRNIKILVIDEGDEMLNQGFKEQLYDIYRYLPPATQVVLVS 176

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   +  +   +  + V++ +  +      I    V +     + + + ++       
Sbjct: 177 ATMPKEVLDMTSKFMNEPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYNNLTIT 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V      L E  F V ++ G++ Q+ER   ++  R G +RV IATDV  
Sbjct: 237 QAVIFCNTRRKVEWLAAKLREANFTVSSMHGDMPQKERDRIMEEFRAGNSRVLIATDVWG 296

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L ++ E  +HR GR+GR GRKG+ +  +          + +  + 
Sbjct: 297 RGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGVGINFVTNEDISVLRDIEQYYST 356

Query: 366 SVVWEPA 372
            +   P 
Sbjct: 357 QIDEMPM 363


>gi|168046775|ref|XP_001775848.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672855|gb|EDQ59387.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 202/426 (47%), Gaps = 22/426 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE +     +  A  E G    T VQ+  +   L  KDV   AQTGSGKT AF L +
Sbjct: 43  ITTFEGLGLTDWLVRACKELGMKRPTLVQQGCVPQILAGKDVFGLAQTGSGKTAAFALPI 102

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              AL + PTRELA Q+  + + L ++  +   V +GG+ +  + 
Sbjct: 103 LQKLAENP------YGVFALVLTPTRELAFQISDQFKALGSEVNLRSTVVVGGMDMTTQA 156

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + L    HIV+ TPGRL DH           +  K +VLDEAD ++D+GF  ++  + ++
Sbjct: 157 KALMQRPHIVIATPGRLRDHFMNDPGIPDVFAKAKYLVLDEADRLMDVGFESELRSVFET 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  R+ L+FSAT++  +  L       A         +    +  + +L   + +D  +
Sbjct: 217 MPSNRQTLLFSATMTSNLKALHDLSLDKAFFYQQYEGFKTVEALQQQYILTPANVKDVYL 276

Query: 236 VNIL---RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           ++I+        ++ I+F S+  +    + +++E      AL    +QQ+R  +L   + 
Sbjct: 277 MHIMSTLEERKIRSVIIFASSCRTCHLLSLMMSELEVDTTALHSMKTQQQRLASLSRFKS 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + IATDVA+RG+D+P ++LVI+ ++     + +HR GRT RAGR G +V +I Q  
Sbjct: 337 GQVSILIATDVASRGLDIPTVDLVINYDIPRFTRDYVHRVGRTARAGRGGSAVSLITQYD 396

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRER----DAQRI----LQDPLFLDSIQGDEKKMV 404
            +  + +       +        + ++       A+R+    + D  F D ++  +++ V
Sbjct: 397 VQLVQDIEELLGKKLEEYELDEDKVLKSITKVYKAKRVAMLKIVDSGFEDKVKTRKEQKV 456

Query: 405 DVLLAK 410
             L+ K
Sbjct: 457 KTLVDK 462


>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
 gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
          Length = 749

 Score =  187 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 126/483 (26%), Positives = 222/483 (45%), Gaps = 25/483 (5%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + I +A +  GY + T +Q+A +   L  KD+   A TG+GKT AF L +  
Sbjct: 156 SFEQMNLSRQILKACAGAGYTDPTPIQQACIPVALSGKDICACAATGTGKTAAFVLPILE 215

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   
Sbjct: 216 RMIY---RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 272

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L++G  +VV TPGRL DH       N+  ++ +VLDEAD ML+  FRD +  ++    + 
Sbjct: 273 LRSGPDVVVATPGRLIDHLHNSPNFNLGSIEVLVLDEADRMLEEAFRDQMNELIRLCAEN 332

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIV 236
           R+ L+FSAT++  I  LA    +  V++ I         +    + +     +DR++ + 
Sbjct: 333 RQTLLFSATMTEEIDELASMSLQRPVKIFINENTDTALKLRQEFIRIRAGRETDRESMVA 392

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      N IVF  T+    R   +L     +V  +   L+Q +R  +L   + G   
Sbjct: 393 ALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKGEID 452

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V ++TD+A+RG+D+  ++ VI+  +  + +  +HR GRT RAG+ G S+ ++ +  ++  
Sbjct: 453 VLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLL 512

Query: 357 ERLF-----REANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + +      R     +V      VEA R R  D +  +Q       I  +++   ++ +A
Sbjct: 513 KEIVNSNADRTLKQRLVAPEV--VEAYRSRIDDLEETIQ------QIDEEDRAEKELRIA 564

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           +    K     L    AG      +   S V  + +  +  +            K S   
Sbjct: 565 ESSMAKTQHA-LETGEAGNERRVWLMKESQVEKQRKREEKRQMKIDARNKAHASKSSEEI 623

Query: 470 SLS 472
           ++ 
Sbjct: 624 AIE 626


>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
           equinum CBS 127.97]
          Length = 1182

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 560 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 618

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 619 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 678

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 679 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 738

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 739 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 798

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 799 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 858

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 859 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 918

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 919 LKQSGQPVPEPIQKMVN-----------AFLDKVKEGKEK 947


>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
           tonsurans CBS 112818]
          Length = 1182

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 560 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 618

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 619 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 678

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 679 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 738

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 739 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 798

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 799 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 858

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 859 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 918

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 919 LKQSGQPVPEPIQKMVN-----------AFLDKVKEGKEK 947


>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
 gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
          Length = 1181

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 537 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 595

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 596 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 655

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 656 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 715

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 716 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 775

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 776 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 835

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 836 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 895

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 896 LKQSGQPVPEPIQKMVN-----------AFLDKVKEGKEK 924


>gi|209809436|ref|YP_002264974.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
 gi|208010998|emb|CAQ81411.1| ATP-dependent RNA helicase [Aliivibrio salmonicida LFI1238]
          Length = 450

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 187/412 (45%), Gaps = 10/412 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+ +     T +Q   +   +  KDVL S++TGSGKT+AF L +     +  
Sbjct: 13  LDNRLLKNLAHQNIKKPTEIQRKAVPVAMAGKDVLASSKTGSGKTLAFVLPMLHK--SLK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    + P A+ +APTRELA QV   L  +        A+  GG + + +   L+    
Sbjct: 71  SKSFSKNDPRAVILAPTRELAKQVYMHLRAMLGGLTYDAALITGGENFNDQVNALRKFPK 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            +V TPGRL DH+  + L ++ L+ ++LDEAD MLDLGF + ++ I    +   ++  M 
Sbjct: 131 FIVATPGRLADHLEHQSLFLNGLEMLILDEADRMLDLGFAEHLQKIHAAANHRRRQTLMF 190

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +                  V     S ++         +   L  +   +  I+    
Sbjct: 191 SATLDHEAVTKFAGNMLDNPKVVSVGLSTDQHADITQSFYLCDHLDHKQALLDKIIETEK 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +TRA   R T +L E   + VALSG+++Q  R+N +        ++ + TDV
Sbjct: 251 YFQIMIFTATRADTDRLTDLLNERKLKAVALSGDMNQTARNNIMSQFERRAHKILVTTDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+DL  +  VI+ ++  + E  +HR GRTGRAG+KG ++ ++        +R+    
Sbjct: 311 ASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRIETFL 370

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + +     ++        + L+     + ++  + K        + P+K
Sbjct: 371 QQDLAFSEFEDLKG-----KFKGLKPKHKREFVKKGDDKKTTAKRGSYTPKK 417


>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 399

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 186/374 (49%), Gaps = 2/374 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++++GY   TS+QE  +   L  K+++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEML--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA+QV + +        +      GGVS   ++  L  G  
Sbjct: 66  GETQRKKRIRAVILTPTRELAIQVEQNITKYAKFLNLTSLAMYGGVSYQHQKDRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  I+   P+  + L+FS
Sbjct: 126 ILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLDMGFIEDINKIIARLPQNIQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +A  ++IA  +   ++I+   V V    +   + +++       
Sbjct: 186 ATLSTPVRALAKSAISEAEEISIAKTDASKANIEQWLVTVDKDRKSALLSHMITDGEWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A     SQ  R   L   + GR +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVAQLEKRGIEAEAFHSGRSQAIREKILADFKKGRLKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ ++    ++ +HR GRTGRA   G ++  + ++  +    + +     
Sbjct: 306 GIDIDNLSRVVNYDIPFPADDYVHRIGRTGRADASGEAISFLSKDNFKNLCIIEKRLGHL 365

Query: 367 VVWEPAPSVEAIRE 380
           +        E  +E
Sbjct: 366 IERRVVEGFEPRKE 379


>gi|326916320|ref|XP_003204456.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Meleagris gallopavo]
          Length = 571

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 192/395 (48%), Gaps = 7/395 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FE  P  I   + + G+   T +Q       L+  D++  AQTG+GKT+A+ +     L
Sbjct: 171 VFEQYPD-IMANIRKIGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHL 229

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            ++         P  L +APTRELA+QV  E    Y   G       GG     +   + 
Sbjct: 230 ASQPIPKDERGGPGMLVLAPTRELALQVEAEC-LKYTYKGYKSICIYGGGDRKAQINVVT 288

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ 
Sbjct: 289 KGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADKMLDMGFEPQIMKILIDVRPDRQT 348

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT    +  LAK+Y ++ + V + + +    + ++ + V++   ++   + N +  
Sbjct: 349 VMTSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVVVINEEEKKAFMENFIDS 408

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              K+ AI+F   +++       L      V +L G+  Q +R  AL   + G+ R+ +A
Sbjct: 409 MKPKDKAIIFVGKKSTADDIASDLGVKGVPVQSLHGDREQCDREQALDDFKKGKVRILVA 468

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--- 357
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G +V +I +   + A    
Sbjct: 469 TDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELI 528

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
            + + AN  V  E     E  ++   ++ ++  + 
Sbjct: 529 DILQRANQVVPDELISMAERYKQCQMRKEMEKDIL 563


>gi|322799398|gb|EFZ20748.1| hypothetical protein SINV_08125 [Solenopsis invicta]
          Length = 764

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 183/370 (49%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + + + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 261 FDDALIKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQR 320

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL+ Q+ +E +       + V  C GG S   + + L++GA 
Sbjct: 321 E-LKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAE 379

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 380 IVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 439

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA++   D +R+        ++D+    ++   +   + N ++  L    +
Sbjct: 440 ATFKKKVEKLARDILTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLVEFLS 499

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDV 303
             +++   T+   +       +     V L  G++ Q ER+  +   +       +ATDV
Sbjct: 500 AGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQLERNKVITAFKKKDVSTLVATDV 559

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P ++ V++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R  
Sbjct: 560 AARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGTAFTLVTEKDKEFAGHLVR-- 617

Query: 364 NVSVVWEPAP 373
           N+    +  P
Sbjct: 618 NLEGANQEVP 627


>gi|242067108|ref|XP_002454843.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
 gi|241934674|gb|EES07819.1| hypothetical protein SORBIDRAFT_04g038330 [Sorghum bicolor]
          Length = 407

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 194/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +
Sbjct: 33  VSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTV 92

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     V V  CIGG S+  + 
Sbjct: 93  CQIVD------TAVREVQALILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDI 146

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG H+V GTPGR+CD I+ + L    +K +VLDEADEML  GF+D I  +    P 
Sbjct: 147 RRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPP 206

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ + SAT+   I  +   +  + VR+ +  +      I    V +     + + + +
Sbjct: 207 ELQVCLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 266

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ QQER   +   R G  RV
Sbjct: 267 LYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGDTRV 326

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + ++  R   
Sbjct: 327 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILR 386

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 387 DIEQYYSTQIDEMPMNVADLI 407


>gi|198470572|ref|XP_001355346.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
 gi|198145515|gb|EAL32403.2| GA10556 [Drosophila pseudoobscura pseudoobscura]
          Length = 939

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 189/379 (49%), Gaps = 17/379 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 240 FEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 299

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 300 I-GKQPPILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQAR 358

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N++    +VLDEAD MLD+GF   I  I++     
Sbjct: 359 DLERGVEVIIATPGRLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 418

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN- 237
           R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V  
Sbjct: 419 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRL 478

Query: 238 -------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                      +     I+F  T+  V    +++    +   ++ G+ +Q ER + L+  
Sbjct: 479 LKEIAPTNNSANNGNKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDF 538

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +      
Sbjct: 539 RNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTP 598

Query: 351 NMQRRAERL---FREANVS 366
           +  ++A  L     EA  +
Sbjct: 599 DNAKQARELISVLEEAGQT 617


>gi|194894625|ref|XP_001978097.1| GG17877 [Drosophila erecta]
 gi|190649746|gb|EDV47024.1| GG17877 [Drosophila erecta]
          Length = 1222

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 108/364 (29%), Positives = 188/364 (51%), Gaps = 5/364 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L   G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +      
Sbjct: 521 MDVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPSLED 579

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               +A+ +APTREL +Q+G+++       G+      GG  +  +  +L+ GA I+V T
Sbjct: 580 GDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCT 639

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSAT
Sbjct: 640 PGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSAT 699

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNA 247
               +  LA+   K  + V +   +    D++   V++    +   ++ +   Y  A + 
Sbjct: 700 FPRQMEALARRILKKPIEVIVGGRSVVCKDVEQNVVILNDDAKFFKLLELLGIYQEAGSI 759

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF   + +     + L +  +  ++L G + Q +R + +   + G+ R+ IAT VAARG
Sbjct: 760 IVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARG 819

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ DL LV++ ++ ++ E+ +HR GRTGRAG+KG +   I     R A  + R  ++S 
Sbjct: 820 LDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDIIRALDLSG 879

Query: 368 VWEP 371
              P
Sbjct: 880 TLIP 883


>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
          Length = 843

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 9/360 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +  ++ + +   GY   T VQ+  +   L  +D++ SA TGSGKT AF + +
Sbjct: 408 ITSFETAGLRDLVLQNIKASGYTKPTPVQKGAIAVVLARRDLIASAVTGSGKTAAFLVPV 467

Query: 59  ASTLLAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +  + +P      P  + I+PTRELA+Q+ RE       + +   +  GG  V 
Sbjct: 468 VNILLEKQVQGAPSGEVQKPEVVIISPTRELAIQIHREARKFSHNSVLKSVIVYGGTQVS 527

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            ++  L NG +I+VGTPGRL D +    ++ S+++  +LDEAD MLD+GF  DIEFI   
Sbjct: 528 HQKSSLMNGCNILVGTPGRLKDFVDKGFIDFSNVQFFILDEADRMLDMGFGSDIEFIAQH 587

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                       MFSAT    +  +A  Y  D V V   +    + D+      V   D+
Sbjct: 588 PTMTPVGRRVTLMFSATFPDDVQKIAGKYLHDYVFVTTGNIGGMNPDVCQEFHEVQRQDK 647

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            N +V ILR  G    IVF  ++ +       LA   FQ  ++ G+  Q +R  AL+  +
Sbjct: 648 RNKLVEILRDLGNSRVIVFVESKKTADFIAAFLANTQFQATSIHGDRLQSQREQALREFK 707

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +AT+VAARG+D+  +E VI+ +L ++ E  +HR GRTGR G  G S+     +
Sbjct: 708 SGQRNILVATNVAARGLDIAGVEYVINYDLPADIEEYVHRIGRTGRVGNAGRSISFYDPD 767


>gi|251787806|ref|YP_003002527.1| ATP-dependent RNA helicase RhlB [Dickeya zeae Ech1591]
 gi|247536427|gb|ACT05048.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
          Length = 428

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPQVIEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  ASSERQTNQPRALIMAPTRELAVQIHTDAEALAKATGLRLGLAYGGDGYDKQLKVLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTQGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGASGCSISLACEEYALNLPAIEDYT 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 GHRIP 380


>gi|221107786|ref|XP_002161873.1| PREDICTED: vasa-related protein CnVAS1 [Hydra magnipapillata]
          Length = 797

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 193/375 (51%), Gaps = 12/375 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I E + +  Y+  T VQ+  +      +D++  AQTGSGKT AF + + +TL+  
Sbjct: 359 NIDRTILENVEKAHYIKPTPVQKYAIPIITGNRDLMSCAQTGSGKTAAFLIPVLNTLMQF 418

Query: 66  NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                   S   APLAL IAPTRELAVQ+ +E       T +   V  GGV V    R +
Sbjct: 419 RSELTSSLSEVQAPLALVIAPTRELAVQIQKEARKFAQNTSIKPVVIYGGVQVAYHLRQV 478

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           Q G H++VGTPGRL D +  + +++++LK ++LDEAD MLD+GF  +I+ I++       
Sbjct: 479 QQGCHLLVGTPGRLKDFLGKRKISLANLKYLILDEADRMLDMGFLPEIKAIINDFDMPPK 538

Query: 181 ---RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                LMFSAT    I  LA  +  + V + I      HSDI    + V  S + + ++ 
Sbjct: 539 EDRHTLMFSATFPTEIQNLAAEFLNNYVYLTIGKVGGTHSDITQCIMEVEESAKRDKLIE 598

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G    +VF  T+         L ++ F   ++ G+  QQ+R  AL   + G   V
Sbjct: 599 ILDTEGTNRNLVFVQTKRLADFLASYLCQNGFHTTSIHGDRLQQQREEALAEFKAGTQHV 658

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----QNMQ 353
            IAT VAARG+D+ D++ VI+ +L    E  +HR GRTGR G KG ++        + + 
Sbjct: 659 LIATAVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDEGLA 718

Query: 354 RRAERLFREANVSVV 368
           R   +   +A   V 
Sbjct: 719 RALVKTLADAEQEVP 733


>gi|10039331|dbj|BAB13308.1| vasa-related protein CnVAS2 [Hydra vulgaris]
          Length = 890

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 193/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   N+  V  + L    Y   T +Q+  +   L ++DV+  AQTGSGKT +F L +
Sbjct: 449 IQSFSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAQTGSGKTASFLLPI 508

Query: 59  ASTLLAEN-----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            + L+ E            + PLA  +APTREL VQ+  E       + +   V  GGV+
Sbjct: 509 ITNLMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVA 568

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           V  +   L+ G H++V TPGRL D I+   +N  +LK ++LDEAD+M+D+GF   IE I+
Sbjct: 569 VAHQADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHII 628

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + S    + +    MFSAT    I  LA  +  D + + +       +D+    + V+ +
Sbjct: 629 EFSGMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGT 688

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   + N+L+  G    +VF   +         L++  F    L  + ++++R +AL+ 
Sbjct: 689 KKRETLENLLQTSGTDQTLVFVEKKRDADFLANFLSQKNFPPTILFADRTREKRESALRD 748

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G A + +AT VAARG+D+ D++ VI+ +L  +    +HR GRTGR G KG +     
Sbjct: 749 FRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFFD 808

Query: 350 QN----MQRRAERLFREANVSVV 368
            +    + R   +L  +A   V 
Sbjct: 809 LDRDGSLARSLVKLLSDAEQDVP 831


>gi|307131092|ref|YP_003883108.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
 gi|306528621|gb|ADM98551.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
          Length = 457

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 129/378 (34%), Positives = 199/378 (52%), Gaps = 11/378 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T +Q A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNVLPAEQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   L       +      +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQQLD------AGQFNTQSLVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HI+V TPGRL DH++ + +++  L+ +VLDEAD MLD+GF D I+ ++   
Sbjct: 115 QRDSLIHAPHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHV 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT   AI  ++   Q+D + + I + +   +       +   S + + + 
Sbjct: 175 PAQRQTLLFSATWPDAIAAISHRIQRDPLTIAIDTVDELPAIEQQFYEVS-RSGKIDLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +    V+AL G++ Q++R   L    +G +R
Sbjct: 234 KLLSREQPASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LE+VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPS 374
             L    N+ + W   P+
Sbjct: 354 NALEEMLNMKLNWHSLPT 371



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFK 454
           +MV       DPE       R  RAG       LCAPEE    + +      + +  +  
Sbjct: 311 EMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLNMKLNWHSLP 370

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G          +   +  G K K     ++  L    G++   IG I + P   +V V 
Sbjct: 371 TGLRITPLEATMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKITIHPMHAYVAVK 430

Query: 515 ADGVDL----LRRTVKLDKGIQLKYL 536
                     L++     K ++++ L
Sbjct: 431 QSVARHAWKQLQQGKIKGKAVKVRLL 456


>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
 gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
          Length = 1171

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 550 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 608

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 609 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 668

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 669 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 728

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 729 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 788

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + +AT 
Sbjct: 789 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILVATS 848

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 849 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 908

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 909 LKQSGQPVPEPIQKMVN-----------AFLDKVKEGKEK 937


>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
 gi|143462251|sp|A2RB17|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
          Length = 467

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 125/425 (29%), Positives = 208/425 (48%), Gaps = 17/425 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +   + + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 48  KTFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPIL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   F        L +APTRELA Q+ +  E L A  GV   V +GG+ +  +  
Sbjct: 108 QALMEKPQPF------FGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSI 161

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LD+ F   ++ IL   P+
Sbjct: 162 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPR 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV++  S+ +  S +    + +    +D  +V 
Sbjct: 222 ERRTFLFSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVY 281

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 282 LLNEFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNI 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  +  + +HR GRT RAG+ G+++  + Q       
Sbjct: 342 LVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWL 401

Query: 358 RLFREANVSVVWEPAPSVEA------IRERDAQRILQDPLFLDSIQGDEKKM-VDVLLAK 410
           R+       +     P  E       + E   Q I+    + +      KK        +
Sbjct: 402 RIEGALGKKLKEYDCPKDEVMVLGENVAEAQRQAIMDMKDYNEKKGSRGKKFGGKRSRDE 461

Query: 411 HDPEK 415
            D E+
Sbjct: 462 MDQEE 466


>gi|26344027|dbj|BAC35670.1| unnamed protein product [Mus musculus]
          Length = 483

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/401 (24%), Positives = 190/401 (47%), Gaps = 19/401 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVRMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E       +Y A +     + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTEYYAYVT-ERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +V++ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVMNFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +    +  +P PS       +  + L    +      DEK
Sbjct: 451 EQLGTEI--KPIPS-------NIDKSLYVAEYHSEPAEDEK 482


>gi|291615697|ref|YP_003518439.1| RhlB [Pantoea ananatis LMG 20103]
 gi|291150727|gb|ADD75311.1| RhlB [Pantoea ananatis LMG 20103]
 gi|327395962|dbj|BAK13384.1| ATP-dependent RNA helicase RhlB [Pantoea ananatis AJ13355]
          Length = 430

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 188/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVVEALDKKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L+NG 
Sbjct: 76  APEGRQVNQPRALILAPTRELAVQIHADAEPLAASTGLKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I+VGT GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPAATQRLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLVEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNLPGIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|149039843|gb|EDL93959.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Rattus norvegicus]
          Length = 940

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 219/472 (46%), Gaps = 12/472 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I  +L + GY   T +Q   +   +  +D++  A+TGSGKT+AF L +   ++ +     
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ +E +      G+ V    GG  +  +  +L+ GA I+V 
Sbjct: 442 EGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+  +  VVLDEAD M D+GF   +  I+D+    R+ +MFSA
Sbjct: 502 TPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T   A+  LA+      + V +   +   SD++ + +++    +   ++ +L  Y  + +
Sbjct: 562 TFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F   +       K L    +  ++L G + Q +R + +   ++G  ++ +AT VAAR
Sbjct: 622 VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L LV++    ++ E+ +HR+GRTGRAG KG +   I ++  R A  + +   +S
Sbjct: 682 GLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELS 741

Query: 367 VVWEPAPSVEAI------RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               P P +E +      +++   +I++             +    L  +    + AA  
Sbjct: 742 GTAVP-PDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALG 800

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           L+       A +    +  +    +   D  A             +    ++
Sbjct: 801 LQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSAPAPTAGNAEKLEIA 852


>gi|147904603|ref|NP_001080569.1| ATP-dependent RNA helicase DDX42 [Xenopus laevis]
 gi|82209788|sp|Q7ZY47|DDX42_XENLA RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|27696431|gb|AAH43977.1| Ddx42-prov protein [Xenopus laevis]
          Length = 947

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/357 (28%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 257 FDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQK 316

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   PA  P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 317 E-LQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 375

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FS
Sbjct: 376 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFS 435

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + DI     ++         +      +   
Sbjct: 436 ATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTST 495

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 496 GSVLVFVTKKANAEELAANLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVA 555

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ V++ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 556 ARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESNFAGDLVR 612


>gi|71650885|ref|XP_814131.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70879078|gb|EAN92280.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 10/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +  
Sbjct: 32  TFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLE 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +              AL + PTRELA+Q  +  + L    +G+ V V  GG ++  +  
Sbjct: 92  KVDTREPHI------QALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDIL 145

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQN  H++V TPGR+ D    +   +   + +VLDEAD++L   F + IE +    P  
Sbjct: 146 RLQNPVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPAD 205

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    +   A  Y ++   +N+  E           V V    + + +  + 
Sbjct: 206 RQSLLFSATFPVTVKDFADRYLRNPYEINLMEELTLRGV-TQYYVFVEERQKIHCLNTLF 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  +
Sbjct: 265 NRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLV 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+
Sbjct: 325 CSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYRI 384

Query: 360 FREANVSVVWEP 371
            +E +  +   P
Sbjct: 385 EKELDTVINAIP 396


>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
           acridum CQMa 102]
          Length = 1161

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/383 (26%), Positives = 186/383 (48%), Gaps = 11/383 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY   T++Q   +   +  +DV+  A+TGSGKTVAF L +   ++ +      
Sbjct: 546 LDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFRHIM-DQPPIKD 604

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ R+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 605 TDGPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKRGAEIIVCT 664

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D     +G+  N+  +  VVLDEAD M D+GF   +  I       ++ ++FSAT
Sbjct: 665 PGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPDKQTILFSAT 724

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGA 244
           +   I +L K   K  V + +   +    +I+    +   S +   ++ +          
Sbjct: 725 MPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREESTKFFRVLELLGELYDRDED 784

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++F   +       K L    +  +++ G   Q +R + +   + G   + +AT VA
Sbjct: 785 ARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGVVPLLVATSVA 844

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G++V  +  + +  A  + +   
Sbjct: 845 ARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQENCAPGIAKALE 904

Query: 365 VSVVWEPAPS-VEAIRERDAQRI 386
            S   +P P  +  +R+   +++
Sbjct: 905 QS--EQPVPERLNEMRKAHREKV 925


>gi|294880401|ref|XP_002768997.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239872070|gb|EER01715.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 689

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 180/376 (47%), Gaps = 17/376 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E ++  G+   T VQ+  +      +D++  AQTGSGKT A+ +     +L +    +
Sbjct: 213 IVENINRCGFDRPTPVQKYSIPTLTARRDLMSCAQTGSGKTGAYLIPAIHNMLVDGPPNA 272

Query: 71  PASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L+
Sbjct: 273 TSSGDYGRRKAYPVTLILSPTRELASQIHEEARKFCYNTGIRPVVVYGGADVRTQLRELE 332

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++        
Sbjct: 333 RGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSR 392

Query: 183 L-----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT    I  LA+++ K+ + + +      H  I      V  + +   +  
Sbjct: 393 DGRQSAMFSATFPKEIQQLARDFLKEYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYR 452

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G   
Sbjct: 453 VLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELP 512

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           + +ATDVAARG+D+  + LVI+ +L +N ++ +HR GRTGRAG  G ++  + +  +   
Sbjct: 513 ILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFVNEGSKPIL 572

Query: 354 RRAERLFREANVSVVW 369
           R    L  E    +  
Sbjct: 573 RDLWTLLEENKQEIPQ 588


>gi|293628906|dbj|BAJ04860.1| vasa homolog [Cynops pyrrhogaster]
          Length = 717

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 186/381 (48%), Gaps = 15/381 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+P+ + + +S+ GY  LT VQ+  +   L ++D++  AQTGSGKT AF L + +
Sbjct: 276 TFEEANLPETLNKNISKAGYAKLTPVQKHSIPIVLAKRDLMACAQTGSGKTAAFLLPILA 335

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            ++ +           P A+ +APTREL  Q+  +       T +   V  GG       
Sbjct: 336 HMMQDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSL 395

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G +I+  TPGRL D IR + + ++ L+ +VLDEAD MLD+GF  D++ ++ S   
Sbjct: 396 RQIYQGCNILCATPGRLLDIIRREKIGLAKLRYLVLDEADRMLDMGFGPDMKILITSPGM 455

Query: 179 KRRMLMFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             +    +   S       +       + D + V +       SD++   + V    + +
Sbjct: 456 PSKEERQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKD 515

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V IL+  G +  +VF  T+      T +L +      ++ G+  Q+ER  AL   R G
Sbjct: 516 KLVEILQGLGTERTMVFVKTKKKADYLTTLLCQENVLATSIHGDRLQKEREEALADFRFG 575

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G  G ++     +  
Sbjct: 576 KCNVLVATNVAARGLDIENVQHVIIFDLSDNIEEYVHRIGRTGRCGNVGKAITFFDSDDN 635

Query: 354 ------RRAERLFREANVSVV 368
                 R   ++  +A   V 
Sbjct: 636 EDRTVARSLVKVLSDAQQEVP 656


>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           EO147]
 gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
           C6786]
          Length = 509

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 131/396 (33%), Positives = 193/396 (48%), Gaps = 22/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 47  LSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 106

Query: 63  -------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVC 108
                             R  P + P  L + PTRELA+QV                   
Sbjct: 107 KTQAQQPREPQQGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRTVSI 166

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF DD
Sbjct: 167 LGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDD 226

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I       ++I         
Sbjct: 227 IETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHYVDD 286

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+  +
Sbjct: 287 RDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRTI 346

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           + +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +V +
Sbjct: 347 RALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTAVSL 406

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           +    Q   +R+ R     +   P   +E    R A
Sbjct: 407 VHHAEQGALKRIERFVRAPL---PVNVIEGFEPRKA 439


>gi|322820318|gb|EFZ26975.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 406

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 10/372 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   + E+G+   + VQE  +   L+ KDVL  A+ G+GKT +F + +  
Sbjct: 32  TFEEYGLRRELQMGIFEKGFERPSPVQEEAIPVALQGKDVLARAKNGTGKTASFVIPVLE 91

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +              AL + PTRELA+Q  +  + L    +G+ V V  GG ++  +  
Sbjct: 92  KVDTREPHI------QALLMVPTRELALQTAQVTKELGKHISGLEVMVTTGGTTLRDDIL 145

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQN  H++V TPGR+ D    +   +   + +VLDEAD++L   F + IE +    P  
Sbjct: 146 RLQNPVHVLVATPGRVVDLASKRTAKLDRCRIIVLDEADKLLSQEFTELIEDLYTYLPAD 205

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    +   A  Y ++   +N+  E           V V    + + +  + 
Sbjct: 206 RQSLLFSATFPVTVKDFADRYLRNPYEINLMEELTLRGV-TQYYVFVEERQKIHCLNTLF 264

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V    K + +  +    +   + QQ R+      R+G  R  +
Sbjct: 265 NRLQINQSIIFCNSVNRVELLAKKITQLGYSCYYIHARMQQQHRNRVFHDFREGHCRNLV 324

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            +D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++  +  + +    R+
Sbjct: 325 CSDLITRGIDIQAVNVVINFDFPKYAETYLHRIGRSGRFGHLGLAINFVTYDDRYNVYRI 384

Query: 360 FREANVSVVWEP 371
            +E +  +   P
Sbjct: 385 EKELDTVINAIP 396


>gi|159045255|ref|YP_001534049.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
 gi|157913015|gb|ABV94448.1| putative ATP-dependent RNA helicase [Dinoroseobacter shibae DFL 12]
          Length = 434

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 191/362 (52%), Gaps = 1/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L+ +   + T +Q   +   L  +DVL  AQTG+GKT AFGL L   L+   
Sbjct: 4   LSPRLVAGLAAQNITDPTPIQTRAIPHGLNGRDVLGIAQTGTGKTAAFGLPLLDALMKAG 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +P +    L +APTREL  Q+   L      + + + V +GGV++  + +  + GA 
Sbjct: 64  TKPAPRT-CRGLILAPTRELVSQICESLRAFTEGSHLKLQVIVGGVAIGPQIKRAERGAD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  K L +S  + +VLDEAD+MLDLGF   +  I    P +R+ ++FS
Sbjct: 123 LIVATPGRLIDLLDRKALRLSETRFLVLDEADQMLDLGFIHALRKIAPLLPAERQTMLFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L++ Y  D  RV +A   +    I      V    +   ++++L  H  + 
Sbjct: 183 ATMPKQMEELSRAYLTDPARVEVAPPGKIADKITQSVHFVEQGAKTQLLIDLLGNHRDEL 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VF  T+    R  + L+   F+  A+ G  SQ +R  AL+  R+G  +V +ATDVAAR
Sbjct: 243 ALVFSRTKHGADRLARKLSNAGFETAAIHGNRSQGQRERALKAFREGTLKVLVATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+PD+  V + +L + PEN +HR GRT RAGR G +V             + +   ++
Sbjct: 303 GIDIPDVRFVYNFDLPNVPENFVHRIGRTARAGRDGQAVAFCAPEEMGELRAVQKVMGLT 362

Query: 367 VV 368
           + 
Sbjct: 363 LP 364


>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
 gi|113649278|dbj|BAF29790.1| Os12g0481100 [Oryza sativa Japonica Group]
          Length = 832

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/426 (28%), Positives = 196/426 (46%), Gaps = 24/426 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 230 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFR 289

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA QV   +E L   T +   + +GG+S   +   L++  
Sbjct: 290 PKRVP---AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 346

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ ++
Sbjct: 347 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 406

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L        VR+      ++ + +    V +  +   N     + +   
Sbjct: 407 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 466

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       IAT
Sbjct: 467 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 526

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +  + +   + + +
Sbjct: 527 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 586

Query: 362 EANVSV---------VWEPAPSVEA--------IRERDAQRILQDPLFLDSIQGDEKKMV 404
           +A   +         V E A  +E         I+E   +RIL+      +   +     
Sbjct: 587 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 646

Query: 405 DVLLAK 410
           D + ++
Sbjct: 647 DEIYSR 652


>gi|157138330|ref|XP_001657248.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108869525|gb|EAT33750.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 1029

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/358 (28%), Positives = 184/358 (51%), Gaps = 5/358 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L + G+   T +Q   +   +  +D++  A+TGSGKT+AF L +   +L +       
Sbjct: 381 DVLRKLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL-DQPPLEDG 439

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P+++ + PTREL +Q+G++++       +      GG  +  +  +L+ GA I+V TP
Sbjct: 440 DGPISIIMTPTRELCMQIGKDIKKFAKSLNLRAVCVYGGTGISEQIAELKRGAEIIVCTP 499

Query: 133 GRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GR+ D      G+  N+  +  VVLDEAD M DLGF   +  I+D+    R+ +MFSAT 
Sbjct: 500 GRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDLGFEPQVMRIIDNIRPDRQTVMFSATF 559

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-KNAI 248
              +  LA+   K  + + I   +    D++   V++    +   ++ +L  +    + I
Sbjct: 560 PRQMEALARRILKKPIEIQIGGRSVVCKDVEQHVVVLEEDAKFFKLLELLGLYQELGSII 619

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF   + +     K L +  +  ++L G + Q +R + +   + GR ++ IAT VAARG+
Sbjct: 620 VFVDKQENADILLKDLMKASYPCLSLHGGIDQFDRDSTIIDFKQGRVKLLIATSVAARGL 679

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   +     R +  + R   +S
Sbjct: 680 DVKQLILVVNYDCPNHYEDYVHRCGRTGRAGNKGFAWTFLTHEQGRYSGDIIRALELS 737


>gi|171677075|ref|XP_001903489.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936605|emb|CAP61264.1| unnamed protein product [Podospora anserina S mat+]
          Length = 580

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/417 (27%), Positives = 195/417 (46%), Gaps = 9/417 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 102 NLSERTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--H 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +    + + PTRELA+Q+      L         VCIGG +   E   L  G 
Sbjct: 160 SLRFKPRNGTGVIVVTPTRELALQIFGVARELMKHHSQTYGVCIGGANRRAEADKLGKGV 219

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH++       +LK++++DEAD +L++GF D++  I+   PK  R  M 
Sbjct: 220 NLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILPKDERQTML 279

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   +      +D   V+V    R   + + L+ 
Sbjct: 280 FSATQTTKVEDLARISLRPGPLYINVDEEKQYSTVEGVDQGYVIVDADKRFLLLFSFLKK 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +      I T
Sbjct: 340 MSKKKVIVFFSSCNSVKYYSELLQYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGTLICT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +          L 
Sbjct: 400 DVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPCELGFLAHL- 458

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + A V VV    P  + +  +   ++++    +L+    D  +      A H    +
Sbjct: 459 KAAKVPVVEYDFPKNKILNVQSQLEKLIGSNYYLNQSAKDGYRSYLHAYASHSLRSV 515


>gi|326575788|gb|EGE25711.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis CO72]
          Length = 391

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 189/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +LL    + D       P AL +APTRELA Q+  +   L   + +      GG    
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFD 125

Query: 116 RERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 126 KQLEQLHKRPLDILIGTPGRIIDWVDKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVR 185

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++ 
Sbjct: 186 HMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKT 245

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +A+  IL     K  I+F + +  V R    L  H      LSG+++QQ+R   LQ  +D
Sbjct: 246 SALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKV-TMLSGDVAQQKRERYLQRFKD 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N 
Sbjct: 305 GEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEND 364

Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377
                 L R  +          ++ 
Sbjct: 365 AFNLPALERHIDQKFKLNQFEFLDE 389


>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
          Length = 483

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 50  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 109

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 110 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 169

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 170 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 229

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 230 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 289

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 290 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 349

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 350 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 409

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 410 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 445


>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
          Length = 460

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 47  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 106

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 107 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 166

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 167 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 226

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 227 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 286

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 287 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 346

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 347 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 406

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 407 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 442


>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
          Length = 454

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 52  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 111

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 112 KAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 171

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 172 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 231

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 232 IDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 291

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 292 VDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 351

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 352 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 411

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 412 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 447


>gi|24644479|ref|NP_524243.2| Rm62, isoform A [Drosophila melanogaster]
 gi|30923187|sp|P19109|DDX17_DROME RecName: Full=ATP-dependent RNA helicase p62
 gi|23175945|gb|AAG22213.2| Rm62, isoform A [Drosophila melanogaster]
 gi|41058179|gb|AAR99134.1| RE11923p [Drosophila melanogaster]
          Length = 719

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 287 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 346

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 347 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 405

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 406 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 465

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 466 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 525

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 526 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 585

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 586 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 645

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 646 VDVLREANQEI 656


>gi|147770303|emb|CAN60235.1| hypothetical protein VITISV_028850 [Vitis vinifera]
          Length = 666

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV +E          +     GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQVEKEFXESAPNLDTLC--VYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  L + Y K+ + ++    + +        Y                I  +  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKR-DADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVE 376
                  P  ++E
Sbjct: 479 GCKFSELPRIAIE 491


>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
 gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
 gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
          Length = 513

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 47  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 106

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 107 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 166

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 167 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 226

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 227 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 286

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 287 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 346

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 347 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 406

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 407 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 442


>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
 gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 529

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 63  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 122

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 123 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 182

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 183 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 242

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 243 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 302

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 303 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 362

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 363 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 422

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 423 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 458


>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
 gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
          Length = 514

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 49  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 108

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 109 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 168

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 169 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 228

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 229 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 288

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 289 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 348

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 349 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 408

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 409 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 444


>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
 gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
 gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
 gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
 gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
 gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
 gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
          Length = 513

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 47  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 106

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 107 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 166

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 167 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 226

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 227 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 286

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 287 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 346

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 347 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 406

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 407 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 442


>gi|53719796|ref|YP_108782.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
 gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124385746|ref|YP_001029162.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
 gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
 gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
           K96243]
 gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
           23344]
 gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
 gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
           10229]
 gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
 gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
 gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
 gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
 gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
 gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
 gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
 gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
 gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
 gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
          Length = 516

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 50  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 109

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 110 KAQAQQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 169

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 170 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 229

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 230 IDDIDTIVAATPATRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 289

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 290 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 349

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 350 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 409

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 410 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 445


>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 515

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 52  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 111

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 112 KAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 171

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 172 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 231

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 232 IDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 291

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 292 VDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 351

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 352 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 411

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 412 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 447


>gi|302900629|ref|XP_003048299.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729232|gb|EEU42586.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 590

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 121/473 (25%), Positives = 211/473 (44%), Gaps = 12/473 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE +       +A+ E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF + + 
Sbjct: 114 QSFEELKLSDKTMKAIKEMGFTKMTEIQRRGIPPSLAGRDVLGAAKTGSGKTLAFLIPVV 173

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     RF P +    + ++PTRELA+Q+      L A       + IGG +   E  
Sbjct: 174 EML--SALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAE 231

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G ++++ TPGRL DH++       +LK++V+DEAD +L++GF D++  I+   PK+
Sbjct: 232 KLSKGVNLIIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEMRQIIKILPKE 291

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R  M  +            ++       + V+   +      ++   V+     R   +
Sbjct: 292 DRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLEQGYVICEADRRFLLL 351

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + + 
Sbjct: 352 FSFLKRNIKKKVIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ 411

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQR 354
              I TDVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +  +   
Sbjct: 412 GTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGSNSKGRSLMFLQPSEVG 471

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               L + A V VV    P      +   ++++    +L+    D  +      A H   
Sbjct: 472 FLSHL-KAARVPVVEFDFPKKIQNVQSQLEKLISQNYYLNKSAKDGYRSYLHAYASHSLR 530

Query: 415 KIA-AGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +     L + +        + P V +  G    RD     +   GS+    G
Sbjct: 531 SVFDINKLDLTKVAKSFGFSVPPRVEITLGASMSRDKKNQGRRAYGSQPRQGG 583


>gi|209693767|ref|YP_002261695.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
 gi|226739529|sp|B6EPA4|RHLB_ALISL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|208007718|emb|CAQ77831.1| ATP-dependent RNA helicase RhlB [Aliivibrio salmonicida LFI1238]
          Length = 434

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 183/366 (50%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+ +G++N T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LEPQVLDGLNAKGFINCTPIQAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  + E L A TG+  A+  GG    ++++ ++ G 
Sbjct: 76  APEGRKITQPRAIIMAPTRELAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRML 183
            I++GT GR+ D  +   ++   ++ VVLDEAD M DLGF  DI F+    P    R  +
Sbjct: 136 DILIGTTGRIIDFYKQGQIDFKAIQVVVLDEADRMFDLGFIKDIRFVFRRMPAPAERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  + ++   V +  + +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELFYPSNDHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCELVWGHLAADKHRVGLLTGDVPQKKRERILEEFTKGEVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L +  E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACEEYAINLPAIEEYI 375

Query: 364 NVSVVW 369
             S+  
Sbjct: 376 EHSIPQ 381


>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
          Length = 517

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 54  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 113

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 114 KAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 173

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 174 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 233

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 234 IDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 293

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 294 VDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 353

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 354 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 413

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 414 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 449


>gi|45361669|ref|NP_989409.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
 gi|40787696|gb|AAH64887.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 205/462 (44%), Gaps = 24/462 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F    +   + +  S+ G +  + VQE  + P L  +D +  A+TGSGKT AF L +
Sbjct: 1   MEGFSRLGLSSWLIDQCSQLGILKPSPVQENCIPPILEGRDCMGCAKTGSGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------FGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+V+ TPGRL DHIR         I  L     D   E     F  D++ IL+
Sbjct: 115 LELSRKPHVVIATPGRLADHIRSSNTFSIKKIRFLVLDEADRLLEQGCTDFTQDLQVILE 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P +R+ L+FSAT++  +  L              SE R    +D R +LV    +D  
Sbjct: 175 AVPAQRQTLLFSATLTDTLQELKTIAMNKPFFWESTSEVRTVEQLDQRYILVPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + ++F +T  +      +L E  F  VAL   + Q++R  AL   
Sbjct: 235 LVHLIQKFQDEHEDWSIMIFTNTCKTCQILNMMLREFSFPSVALHSMMKQKQRFAALAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR GM++ ++ Q
Sbjct: 295 KSSVFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGMAITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEKK 402
                   +  + N+ +        E ++         R+ +  L+   F +  + +++K
Sbjct: 355 YDIHLVHAIEEQINMKLEEFKVKESEVLKILTQVNVTRRECEIKLECTDFDEKKEINKRK 414

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
            + +     D E      L   +      +E    ++   R+
Sbjct: 415 QLILEGKDPDLEAKRKAELEKIKKQKKKFKEHIQETMQKKRE 456


>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
 gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
          Length = 482

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 19  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 78

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 79  KAQAQQPRAPREAQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 138

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 139 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 198

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 199 IDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 258

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 259 VDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 318

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 319 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 378

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 379 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 414


>gi|27364381|ref|NP_759909.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
 gi|32363316|sp|Q8DDN6|RHLB_VIBVU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|27360500|gb|AAO09436.1| ATP-dependent RNA helicase RhlB [Vibrio vulnificus CMCP6]
          Length = 435

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ G 
Sbjct: 76  AHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLTKLQGGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            +++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P  +    +
Sbjct: 136 DVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPAPQERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILEQFTQGSVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++       +    
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEDYAINLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
             ++          + + D+  ++QD
Sbjct: 376 EHTIP---------VSDYDSSALIQD 392


>gi|307174080|gb|EFN64767.1| ATP-dependent RNA helicase abstrakt [Camponotus floridanus]
          Length = 620

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+     + I   L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 178 LKTFKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPI 237

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +     F     P  L I P+RELA Q    +              +   + IG
Sbjct: 238 IEFCLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQVDCPEIRCCLAIG 297

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +  G HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+ 
Sbjct: 298 GVPVSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVR 357

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 358 TIFSFFRGQRQTLLFSATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEA 417

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G + Q+ERS +++  
Sbjct: 418 KIVYLLECLQKTAPP-VLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAF 476

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R GR  V +ATDVA++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 477 RGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 536

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 537 ANDESVLLDLKHLLMEAKQKVPP 559


>gi|212634102|ref|YP_002310627.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212555586|gb|ACJ28040.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 422

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 184/362 (50%), Gaps = 1/362 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + ++GY   T +Q A +   L  KD++ SAQTG+GKT AF L +   L  ++       +
Sbjct: 29  IKQKGYNEPTPIQTAAIPVILSGKDLMASAQTGTGKTAAFTLPILQKLAMQSAG-KETDS 87

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL + PTRELAVQV + +      T +   V  GGVS+  +   L  G  IVV TPGR
Sbjct: 88  IRALILVPTRELAVQVNKSVTEYGVNTALKSMVIYGGVSIDAQASSLAAGVDIVVATPGR 147

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH+R   L++  +  +V DEAD MLD+GF D+I  IL   P +R+ L+FSAT S AI 
Sbjct: 148 LLDHLRRGSLSLMAIDTLVFDEADRMLDMGFMDEINAILKQLPTERQTLLFSATFSDAIY 207

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L+K      VR+ +   N     ++     V    +   I +++  +  +  ++F   +
Sbjct: 208 RLSKKLLSKPVRIEVDKANSAADSVEQIVYAVDSDRKAALISHLINKYHWQQVLIFSRKK 267

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
            +    T  L        A  G+LSQ  R   L   + G  +  +ATDVAARG+D+ +L 
Sbjct: 268 QTADTITSKLVAAGVAAKAFHGDLSQGAREQVLNDFKAGNIKALVATDVAARGLDIVELN 327

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            V++ E+    E+ +HR GRTGRAG  G ++ +  ++  R  E L    +  +  +  P 
Sbjct: 328 YVVNYEIPFVAEDYIHRIGRTGRAGNSGKAITLYSEDDARLLEELESLLDKRLPQQWLPG 387

Query: 375 VE 376
            E
Sbjct: 388 FE 389


>gi|170724880|ref|YP_001758906.1| ATP-dependent RNA helicase RhlB [Shewanella woodyi ATCC 51908]
 gi|226739552|sp|B1KQF6|RHLB_SHEWM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|169810227|gb|ACA84811.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 441

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 201/366 (54%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I  AL+E G+   T +Q   L   L++KD+   AQTG+GKT+AF +A    LL+ 
Sbjct: 15  SLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDHLLST 74

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   + P A+ +APTRELA+Q+ ++   L   TG+ V +  GG S   +R+ L  G
Sbjct: 75  PVPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRKVLDKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             I++GT GR+ D++R   +N+S ++AVVLDEAD M DLGF  DI F+    P    R  
Sbjct: 135 VDILIGTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA ++  +  +V IA   +   +I       ++ ++   +++++   
Sbjct: 195 MLFSATLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEED 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             + AIVF +T+ S       L     +V  L+G++ Q++R   L+   +G+  + +ATD
Sbjct: 255 WPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ + D+  V + +L  + E+ +HR GRTGRAG+KG+SV    +        +   
Sbjct: 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEEYALNLPAIEEY 374

Query: 363 ANVSVV 368
              S+ 
Sbjct: 375 ITHSIP 380


>gi|240949168|ref|ZP_04753515.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
 gi|240296471|gb|EER47107.1| ATP-dependent RNA helicase RhlB [Actinobacillus minor NM305]
          Length = 404

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 198/387 (51%), Gaps = 12/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +  AL  +G+   T +Q   L   L+  D+   AQTG+GKT+AF +A    LL  
Sbjct: 14  SIHENVLAALESKGFEFCTPIQAKTLPITLKGNDIAGQAQTGTGKTMAFLIATFHHLLT- 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N+  S  + P AL +APTRELAVQ+  + E L   + + +A+  GG    ++   ++ G 
Sbjct: 73  NECQSNKNQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQVEAIEKGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+VGT GR+ D+++   +N+  ++ +VLDEAD M DLGF  DI +++   PK  +   +
Sbjct: 133 DILVGTTGRVIDYVKQGIINLDCIQVIVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTM 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+SP +  LA     +A  V I    R    I       +  D+   ++ +L    
Sbjct: 193 LFSATLSPRVRELAYEDMNNASYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEW 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+       + L     +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 253 PERCMIFANTKQKCEEIWQYLLADGHRVGLLTGDIAQKKRLALLDSFTKGELDILVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P++  V + +L  + E+ +HR GRTGRAG+ G S+    +        +    
Sbjct: 313 AARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGQSGHSISFACERYAVNLPAIEEYI 372

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + D+Q +L  P
Sbjct: 373 GHSIP---------VSQYDSQALLALP 390


>gi|162148820|ref|YP_001603281.1| cold-shock DEAD box protein A-like protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787397|emb|CAP56992.1| Cold-shock DEAD box protein A homolog [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 483

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 120/362 (33%), Positives = 186/362 (51%), Gaps = 3/362 (0%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY + T +Q   +   L  +DVL  AQTG+GKT +F L +   L     R   A  P +
Sbjct: 1   MGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPMLEILSGSRAR---ARMPRS 57

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L + PTRELA+QV            +  A+ IGG S+  ++  L  G  +++ TPGRL D
Sbjct: 58  LILEPTRELALQVAENFVNYGKYLKLNHALLIGGESMAEQKDVLNRGVDVLIATPGRLID 117

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
                GL ++  + +V+DEAD MLD+GF  DIE I+      R+ L FSAT++P I  LA
Sbjct: 118 LFERGGLLLTQTRLLVIDEADRMLDMGFIPDIEKIVAMLSPVRQTLFFSATMAPEIRRLA 177

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
             + ++   + ++  +   + I+   V+V  +D+   +  +LR    +NAIVFC+ +  V
Sbjct: 178 DMFLQNPKEITVSRPSSVATTIETGLVVVDEADKRRVLRRMLRDDAVQNAIVFCNRKRDV 237

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L +H F   AL G+L Q  R   L+  + G  ++ + +DVAARGID+  L  V 
Sbjct: 238 DVLYKSLVKHDFSAGALHGDLPQSVRFATLERFKSGELKILVCSDVAARGIDIGGLSHVF 297

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L  + E+ +HR GRTGRAGR G +  +     +  AE +      ++       V  
Sbjct: 298 NFDLPFHAEDYVHRIGRTGRAGRSGHAYSLATPYDRALAEAIETLIGHAIPRLEVEGVTQ 357

Query: 378 IR 379
           + 
Sbjct: 358 LE 359


>gi|121699880|ref|XP_001268205.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
 gi|134034070|sp|A1CTZ2|DBP4_ASPCL RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119396347|gb|EAW06779.1| DEAD box RNA helicase (Hca4), putative [Aspergillus clavatus NRRL
           1]
          Length = 823

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 109/476 (22%), Positives = 203/476 (42%), Gaps = 11/476 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++P  +     L+   +  LT +Q   ++  L+ +DVL +A+TGSGKT+AF + +
Sbjct: 48  FESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPV 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L      ++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LENLYRRQ--WAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLREEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +L+ +VLDEAD +LDLGF+  ++ I+   PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIVGHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  ++ LA+   +D   V +         + +    V+  L  + + + 
Sbjct: 226 ERQTLLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQKLDILW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     +VF S+   V    +        +  +     Q++      +      +
Sbjct: 286 SFIRSNLKSKTMVFFSSGKQVRFVYESFRHMQPGIPLMHLHGRQKQGGRLDIMTNFSQAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R GR G +V  +  + + 
Sbjct: 346 HCVLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYGRDGRAVLFLDPSEEE 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +   +  V +      + +   I+++      +DP      Q      V  +  + D
Sbjct: 406 GMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYIGQKAFISYVKSVYIQKD 465

Query: 413 PEKIAAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            E      L++   A          +  + G D  +  +        S D+  GS 
Sbjct: 466 KEIFKLKELKLDEFASSLGLPGAPRIKFIKGDDTKQRKNAPRAAAHLSSDDEAGSD 521


>gi|89094340|ref|ZP_01167281.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
 gi|89081399|gb|EAR60630.1| ATP-dependent RNA helicase, DEAD box family protein
           [Oceanospirillum sp. MED92]
          Length = 412

 Score =  187 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 201/389 (51%), Gaps = 7/389 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++   Q + +A+   GY   + VQ   +   L  KD+LV A+TG+GKT AF L +  
Sbjct: 2   LFKDLCLSQPVLQAVENAGYHEASPVQAEAIPAVLSGKDLLVGAKTGTGKTAAFALPVLD 61

Query: 61  TLLAENDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL  + +  P    + AL + PTRELA QV    +     TG+  AV  GGV +  +  
Sbjct: 62  QLLNTSSQVQPDKKVIKALVLVPTRELAQQVNNSFKKYAKGTGLRSAVAYGGVGIGPQID 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V TPGRL D  + K  N+  ++ ++ DEAD MLD+GFRD+I+ ++   PK+
Sbjct: 122 QLKQGVDLLVATPGRLLDLCKKKAANLREIEFLIFDEADRMLDMGFRDEIKAVISKLPKR 181

Query: 180 ----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R++++FSAT++  I   +KN       + +        ++D        + +    
Sbjct: 182 EQKARQVMLFSATLNDRIFKFSKNLLLKPQVIEVDQRGSSADNVDQIIYNCDPARKYEIT 241

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +++  G    +VF  T+    +  + L+E   +   +  + +Q++R +AL   +  + 
Sbjct: 242 SYLIKNRGWAQVMVFSQTKQGADKLQQYLSEQGLETDVIHADRTQKQREDALSQFKSQKL 301

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVAARGID+ +L  VI+ E+    E+ +HR GRTGRAG +G+++ ++ +     
Sbjct: 302 KVLVATDVAARGIDIAELPAVINLEMPFKAEDYIHRIGRTGRAGSQGVAISLLIEEENYL 361

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQ 384
            E +    +  +  +     E    R+ +
Sbjct: 362 LEAIEALIDERLPQQWLTGFEPDLSREIE 390


>gi|242019547|ref|XP_002430222.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212515318|gb|EEB17484.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 763

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 179/369 (48%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + + + + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 276 FDEALMKVIRKSEYTTPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFVWPMLIHIMDQK 335

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+ L +APTREL+ Q+  E +       + V  C GG S   + + L+NGA 
Sbjct: 336 E-LKPGDGPIGLILAPTRELSQQIYSEAKKFGKVYNIQVICCYGGGSKWEQSKALENGAE 394

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D I+ K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 395 IVVATPGRMIDLIKMKATNLKRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 454

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  LA+    D +R+        + D+    +++         +         N
Sbjct: 455 ATFKKKVERLARVVLTDPIRIVQGDVGEANEDVIQNVLILPNQAAKFMWLTSHIVEFLSN 514

Query: 247 A--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F + + +       L    F V+ L G++ Q ER+  +   +     + +ATDVA
Sbjct: 515 GSLLIFVTKKVNAEEVANNLKLKEFDVLLLHGDMDQIERNKVITQFKKKEVSILVATDVA 574

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P ++ V++ +++ + +   HR GRTGRAG +G +  ++    +  A  L R  N
Sbjct: 575 ARGLDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGERGYAYTLVLNQDKEFAGHLVR--N 632

Query: 365 VSVVWEPAP 373
           +    +  P
Sbjct: 633 LEGANQEVP 641


>gi|182412765|ref|YP_001817831.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
           PB90-1]
 gi|177839979|gb|ACB74231.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
          Length = 409

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 107/363 (29%), Positives = 174/363 (47%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   GY + T +Q   +   L   D++ SAQTG+GKT AF L + + L A  
Sbjct: 8   LSAPVLRGVVAAGYTDPTPIQLRAIPVVLGGGDLIGSAQTGTGKTAAFALPILTRLGAHA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     AP  L + PTRELA QV          T +      GGV    +R +L+ G  
Sbjct: 68  AR-----APRVLVLEPTRELAAQVETAFRDFARFTDLRTVAVFGGVGYGLQRTELKRGVD 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D++  + +N+  ++ +VLDE D MLD+GF   ++ I+   P++R+ L FS
Sbjct: 123 VIVATPGRLMDYLHDRTINLQGVEILVLDEVDRMLDMGFLPVVKDIIQRCPRQRQTLFFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  +A    ++  RV +      +  + +    VA   +   +  +L      +
Sbjct: 183 ATVPPEIQAVASFALRNPTRVEVGVNRSVNESVKHALYPVAADQKFELLEALLARTDFDS 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  + L      V  L    SQ +R  AL   + G+  + +ATD+AAR
Sbjct: 243 VLVFSRTKHGADKIARKLKAANHSVAVLHANRSQNQRIEALAGFKSGKYEIMVATDIAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ ++   PE+ +HR GRTGRA   G +  ++          + R     
Sbjct: 303 GIDVAGVSHVINYDVPEKPEDYVHRIGRTGRAQAVGDAFTLVTPENAHDVRDIERFIGQK 362

Query: 367 VVW 369
           +  
Sbjct: 363 IPE 365


>gi|156391127|ref|XP_001635620.1| predicted protein [Nematostella vectensis]
 gi|156222716|gb|EDO43557.1| predicted protein [Nematostella vectensis]
          Length = 518

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 178/370 (48%), Gaps = 5/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +  ++ +  Y   T +Q   L   L  +D++  A+TGSGKT AF       ++ + 
Sbjct: 113 FDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIM-DQ 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L  APTREL  Q+  E         + V    GG + + + + LQ GA 
Sbjct: 172 PELQVGDGPIVLICAPTRELCQQIYTEARRFGKAYNIHVVAVFGGGNKYEQSKALQEGAE 231

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I ++    R+ L+FS
Sbjct: 232 IVVATPGRLIDHVKAKATNLHRVTYLVFDEADRMFDMGFEPQVRSIANNVRPDRQTLLFS 291

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    +  L ++   D VRV I      + D+     +          +      +  A
Sbjct: 292 ATFKKKVEHLCRDILVDPVRVVIGELGEANEDVTQIVHIFNSMPSKWEWLTQNLVSFASA 351

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + + +       L ++ F+V  L G++ Q ERS  L   +     + +ATDVA
Sbjct: 352 GSVLIFVTKKLNSEELATNLRKNDFEVALLHGDMDQFERSKVLGQFKKREIPILVATDVA 411

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P ++ VI+ +++ +     HR GRTGRAG KG +  ++ Q+ Q  A  L R  N
Sbjct: 412 ARGLDIPSIKTVINYDVARDITTHTHRIGRTGRAGEKGNAYTLLTQSDQNFAGDLVR--N 469

Query: 365 VSVVWEPAPS 374
           + +  +  P 
Sbjct: 470 LEIANQVVPE 479


>gi|119500998|ref|XP_001267256.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
 gi|134034091|sp|A1CXK7|DED1_NEOFI RecName: Full=ATP-dependent RNA helicase ded1
 gi|119415421|gb|EAW25359.1| ATP dependent RNA helicase (Dbp1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 676

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 192 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 251

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                    PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 252 AFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 311

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   
Sbjct: 312 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 371

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I       +  +R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 372 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 431

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 432 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRER 491

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 492 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 551

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 552 ATAFFNRGNRGVVRELIDLLKEAHQEVP 579


>gi|134034090|sp|P0C2M6|DED1_EMENI RecName: Full=ATP-dependent RNA helicase ded1
 gi|259482717|tpe|CBF77461.1| TPA: ATP-dependent RNA helicase ded1 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:P0C2M6] [Aspergillus
           nidulans FGSC A4]
          Length = 668

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 192/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 185 VNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI 244

Query: 59  ASTLLAEND-----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            S                       + P +L +APTREL  Q+  E      ++ V   V
Sbjct: 245 LSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCV 304

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF  
Sbjct: 305 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEP 364

Query: 168 DIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I       +   R+ LMFSAT    I  LA+++ KD V +++        +I  + 
Sbjct: 365 QIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 424

Query: 224 VLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V   D+ + +++IL  HG     ++F  T+      ++ L    F   A+ G+ +Q+E
Sbjct: 425 EYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRE 484

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G
Sbjct: 485 RERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 544

Query: 343 MSVFVIPQNMQ---RRAERLFREANVSVV 368
           ++     +  +   R    L +EA+  V 
Sbjct: 545 IATAFFNRGNRGVVRDLIDLLKEAHQEVP 573


>gi|153215195|ref|ZP_01949876.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|153831172|ref|ZP_01983839.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|124114840|gb|EAY33660.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 1587]
 gi|148873341|gb|EDL71476.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 623-39]
 gi|327485046|gb|AEA79453.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae LMA3894-4]
          Length = 460

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA 437


>gi|123442077|ref|YP_001006060.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089038|emb|CAL11856.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 460

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 140/415 (33%), Positives = 206/415 (49%), Gaps = 19/415 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPAGIEQISARV-QRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            + W PA  V     R A  +L+  +    I G  K       AK  P  I    
Sbjct: 364 KLKWTPAEQV----SRSANTLLEPEMVTLCIDGGRK-------AKIRPSDILGAL 407



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPSDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|121727419|ref|ZP_01680547.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|147673597|ref|YP_001218057.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262167586|ref|ZP_06035291.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262190509|ref|ZP_06048754.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
 gi|121630191|gb|EAX62591.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V52]
 gi|146315480|gb|ABQ20019.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|227014452|gb|ACP10662.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O395]
 gi|262024039|gb|EEY42735.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC27]
 gi|262033605|gb|EEY52098.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae CT 5369-93]
          Length = 460

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRAYVAVQKKIA 437


>gi|51245828|ref|YP_065712.1| ATP-dependent RNA helicase DbpA [Desulfotalea psychrophila LSv54]
 gi|50876865|emb|CAG36705.1| probable ATP-independent RNA helicase (DbpA) [Desulfotalea
           psychrophila LSv54]
          Length = 469

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 132/404 (32%), Positives = 205/404 (50%), Gaps = 13/404 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + + + L   GY  +T +Q   L   L  +D+L  A+TGSGKT AFG+ L
Sbjct: 1   MSAFTTLALSKAMTDNLEIMGYHEMTPIQAESLPHVLEGEDLLAQAKTGSGKTAAFGIGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              L     R         L + PTRELA QV  EL  +      + +    GG+ +  +
Sbjct: 61  LHNLDVSLFRV------QTLVMCPTRELAEQVAGELRRIARFKHNIKITTLCGGMPIKPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++ AHIVVGTPGR+  H++ + LN+ H+  +VLDEAD MLD+GF D ++ I+   P
Sbjct: 115 LASLEHQAHIVVGTPGRIEQHLKRESLNLDHVTTLVLDEADRMLDIGFADTLDAIISYLP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ L+FSAT    I  L++ +Q  A RV I     + + I           +   +  
Sbjct: 175 RRRQTLLFSATFPDEILRLSEQFQYKAQRV-IVDVEHEENSIQQEFFECKWDKKAAIVSR 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL  H  ++ ++FC+T+A+     + L    F  +A+ G+L Q+ER+  L    +G + +
Sbjct: 234 ILATHKPESTLIFCNTKANCRDIAEALEAKGFSALAIHGDLDQRERTEVLVRFSNGSSPI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L  VI+ +L    E  +HR GRTGRAG++G++  ++    + R E
Sbjct: 294 MVATDVAARGLDINGLSAVINVDLPFESEVYIHRIGRTGRAGKEGLAFSLMEPGEEFRLE 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            + R             VEA+           P+   SI G  K
Sbjct: 354 EINRLMGTDF---KISDVEALAPAGKGVTALPPMVTLSINGGRK 394



 Score = 68.1 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQK 478
            F  +        EEI  +    G D    D  A    G            S++ G K K
Sbjct: 340 AFSLMEPGEEFRLEEINRLM---GTDFKISDVEALAPAGKGVTALPPMVTLSINGGRKTK 396

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
                ++  L + +GI    +G I      ++V +     D   R +   K    +++
Sbjct: 397 LRPGDILGALTKDAGIAGSKVGKINCFDFYSYVAIERSVADEAERALSTKKIKGRRFI 454


>gi|225627526|ref|ZP_03785563.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
 gi|225617531|gb|EEH14576.1| DEAD-box ATP dependent DNA helicase [Brucella ceti str. Cudo]
          Length = 549

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 192/365 (52%), Gaps = 2/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           V+ + +   G      +Q   +   L  +D+L  AQTGSGKT AF L +   ++   D+ 
Sbjct: 111 VLLKGVEAAGMTEPKPIQTQAIPSQLEGQDILGIAQTGSGKTAAFSLPILQKIIGLGDKR 170

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P +A  AL +APTRELAVQ+ + +  +     +  A+ +GGVS   + + +  G  +++
Sbjct: 171 RPKTA-RALILAPTRELAVQIEQTIRNVSKSAHISTALVLGGVSKLSQIKRIAPGIDVLI 229

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGRL D +R   +++S  + +VLDEAD MLD+GF +D++ I  ++  +R+  +FSAT+
Sbjct: 230 ATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFINDVKRIAKATHAERQTALFSATM 289

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
              I +LA+   +D VRV +A +    S+I      V   ++   +  +L     ++ IV
Sbjct: 290 PKEIASLAERLLRDPVRVEVAPQGTTASEITQVVHPVPTKEKRRLLSAMLTDADMRSVIV 349

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+       + L    + V A+ G  SQ  R  AL   RDG  R+ +ATD+AARGID
Sbjct: 350 FTRTKHGADAVVRHLERDRYDVAAIHGNKSQNARQRALNGFRDGTLRILVATDIAARGID 409

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANVSVV 368
           +P    V++ +    PE  +HR GRTGR G  G S+ +  P   + +   + R     + 
Sbjct: 410 VPGSSHVVNYDPPDEPETYVHRIGRTGRNGASGASITLYDPATEESKLRAVERVTRSKLS 469

Query: 369 WEPAP 373
            + AP
Sbjct: 470 IKDAP 474


>gi|114321219|ref|YP_742902.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227613|gb|ABI57412.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 438

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 194/385 (50%), Gaps = 5/385 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   G+   T +Q A L   L  +D+   AQTG+GK+ AF LA    L+   
Sbjct: 16  LHDALMDGIKRAGFEYCTPIQAATLPKALEGRDIAGQAQTGTGKSAAFLLAAMHRLMTV- 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L +APTRELA+Q+ R+   L   TG+  A   GG     +R+ LQ G  
Sbjct: 75  PVEEGKEGPWTLILAPTRELALQIHRDALQLGRYTGLKCAAIYGGTGYEAQRQQLQEGVD 134

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF- 185
           I++GTPGR+ D  + +  ++ H++ V+LDEAD M DLGF  DI +++   P+  + +   
Sbjct: 135 IIIGTPGRVIDFFKQRIFHLKHIEVVILDEADRMFDLGFIADIRYLMRRMPEPSKRMNML 194

Query: 186 -SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-ILRYHG 243
            SAT+S  +  LA  +  D   V I SE      +  +   V+  ++   ++  I +   
Sbjct: 195 FSATLSHRVMELAYEHLNDPEVVRIESEQITADKVRQKLYHVSKDEKIPLLLGLIRQEEA 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+F +T+ +  R T  L  +  +   +SG++ Q++R + L+  +DG  R  +ATDV
Sbjct: 255 MNRSIIFVNTKRAADRVTGYLLGNDIEAAVISGDIPQKKRESLLKRFQDGELRFLVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  VI+ +L  +PE+ +HR GRT RAG  G ++    +        +    
Sbjct: 315 AARGLHIEDVSHVINYDLPQDPEDYVHRIGRTARAGASGDAISFACEEYVFSLPDIESFI 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQ 388
              +  E  PS E + E    + +Q
Sbjct: 375 EQRIPAE-MPSPEMMVEPKPPKRIQ 398


>gi|24644485|ref|NP_731033.1| Rm62, isoform C [Drosophila melanogaster]
 gi|24644487|ref|NP_731034.1| Rm62, isoform F [Drosophila melanogaster]
 gi|45551833|ref|NP_731035.2| Rm62, isoform B [Drosophila melanogaster]
 gi|10727151|gb|AAG22212.1| Rm62, isoform F [Drosophila melanogaster]
 gi|23175947|gb|AAN14332.1| Rm62, isoform C [Drosophila melanogaster]
 gi|25012758|gb|AAN71471.1| RE68337p [Drosophila melanogaster]
 gi|45446365|gb|AAF51926.2| Rm62, isoform B [Drosophila melanogaster]
 gi|220950572|gb|ACL87829.1| Rm62-PB [synthetic construct]
          Length = 578

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 146 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 205

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 206 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 264

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 265 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 324

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 325 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 384

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 385 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 444

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 445 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 504

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 505 VDVLREANQEI 515


>gi|328849200|gb|EGF98385.1| hypothetical protein MELLADRAFT_22529 [Melampsora larici-populina
           98AG31]
          Length = 815

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 177/362 (48%), Gaps = 8/362 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     E +   GY   + +Q   +   +  +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 155 LHSACLEVIKSLGYQAPSPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMFRHIKDQR 214

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ + PTRELA Q+ +E        G+  A   GG  +     D++ GA 
Sbjct: 215 P-LEALEGPIAMIMTPTRELATQIYKEGRPFLKALGLRAACAYGGSPLKDNIADMKRGAE 273

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           ++V TPGR+ +      G+ +N+  +  +VLDEAD M D+GF   +  I++     R+ +
Sbjct: 274 VIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIRPDRQTV 333

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NIL 239
           +FSAT    +  LA+   +  + + +   +   S+I+    +   S + N ++       
Sbjct: 334 LFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQIVEVRDDSTKFNRLLEILGRFY 393

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  ++VF   + S     + L +  +  ++L G   Q +R   +   + G   + I
Sbjct: 394 NEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKAGVTPIVI 453

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  +  I  + +R A  L
Sbjct: 454 ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFISPDQERYAIDL 513

Query: 360 FR 361
            R
Sbjct: 514 LR 515


>gi|168179718|ref|ZP_02614382.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182669435|gb|EDT81411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
          Length = 376

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 111/363 (30%), Positives = 184/363 (50%), Gaps = 6/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +   +  + 
Sbjct: 9   LSDSIIDVLKKQRIIEPTPIQEESIMLIKNGNDVIAEAQTGTGKTLAFLLPMFENISPD- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H
Sbjct: 68  -----INAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FS
Sbjct: 123 LVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  LA    +D   + I  E     +I    +      +   +  IL       
Sbjct: 183 ATMNSEVKKLAYKNMRDPKLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFM 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAAR
Sbjct: 243 AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    + +E    
Sbjct: 303 GLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLGMIEKEIKFK 362

Query: 367 VVW 369
           +  
Sbjct: 363 IPR 365


>gi|317153822|ref|YP_004121870.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944073|gb|ADU63124.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 421

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 173/366 (47%), Gaps = 9/366 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++      I   +   G+   T +Q   +   L+ +DV+  AQTG+GKT AF L +  
Sbjct: 2   TFDHFSFDLRINAGIKSCGFTVPTPIQTLAIPEVLKGRDVMGLAQTGTGKTAAFALPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL  + R +       L +APTRELA+Q+    +    + G+  +   GGV  + +   
Sbjct: 62  RLL--DSRATGQGPIRCLVLAPTRELALQIQETFDVFGRQAGIRSSCVFGGVGFNPQINA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               A +VV  PGRL   ++   + + H+  +VLDEAD MLD+GF  D++ IL   P KR
Sbjct: 120 A-RKATVVVACPGRLVALLQQGDIRLDHVDTLVLDEADRMLDMGFMPDLKRILSRLPAKR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA     D  RV   S       +      VA   +   +  +L 
Sbjct: 179 QNLLFSATMPADIRKLADTILVDPARV-QVSNTVPVESVTQTFYPVADHLKGGLLEALLG 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ +VF  T+       K L         L G +SQ +R  AL   R G   + +A
Sbjct: 238 SMERESVLVFTRTKHRAKNLAKRLGLRGMSATFLQGNMSQNQRQRALDGFRCGDFEIMVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TD+AARGID   +  VI+ +     E   HR GRTGRAGR G ++ +I +      R  E
Sbjct: 298 TDIAARGIDCDRISHVINFDAPDTAEAYTHRIGRTGRAGRTGEALSLITREDHLVVRDIE 357

Query: 358 RLFREA 363
           R+ R +
Sbjct: 358 RVLRRS 363


>gi|3435312|gb|AAC32396.1| RNA helicase-related protein [Homo sapiens]
          Length = 709

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 141 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 201 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 259

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 260 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 319

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 320 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 379

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 380 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 439

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 440 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 496


>gi|46143736|ref|ZP_00134588.2| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307256578|ref|ZP_07538359.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864988|gb|EFM96890.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 406

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 111/343 (32%), Positives = 185/343 (53%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A+   LL  N
Sbjct: 15  IHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIAVFHYLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +   ++
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSARVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 DRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+  
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISF 356


>gi|301772834|ref|XP_002921834.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic initiation factor
           4A-III-like [Ailuropoda melanoleuca]
          Length = 417

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 199/385 (51%), Gaps = 15/385 (3%)

Query: 3   IFE--NIPQVIGEALSE------RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
            F+   + + +   +         G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F
Sbjct: 39  TFDTMGLREDLLRGIYAXVRRVVLGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF 98

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            +++   L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V
Sbjct: 99  SISVLQCLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNV 152

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + R L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +  
Sbjct: 153 GEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 212

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDN 233
             P   ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + +
Sbjct: 213 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFD 272

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++        A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G
Sbjct: 273 TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 332

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            +RV I+TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  
Sbjct: 333 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 392

Query: 354 RRAERLFREANVSVVWEPAPSVEAI 378
           R    + +  +  +   P    + I
Sbjct: 393 RILRDIEQYYSTQIDEMPMNVADLI 417


>gi|195343855|ref|XP_002038506.1| GM10578 [Drosophila sechellia]
 gi|194133527|gb|EDW55043.1| GM10578 [Drosophila sechellia]
          Length = 724

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 178/371 (47%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  +
Sbjct: 291 HLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQ 350

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G 
Sbjct: 351 QP-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGC 409

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+
Sbjct: 410 EIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMW 469

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNIL 239
           SAT    +  LA+++  + +++NI S     +    + V V          +        
Sbjct: 470 SATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYD 529

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +
Sbjct: 530 TSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILV 589

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L
Sbjct: 590 ATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKAL 649

Query: 360 ---FREANVSV 367
               REAN  +
Sbjct: 650 VDVLREANQEI 660


>gi|119773890|ref|YP_926630.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
 gi|119766390|gb|ABL98960.1| ATP-dependent RNA helicase DbpA [Shewanella amazonensis SB2B]
          Length = 467

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 135/400 (33%), Positives = 206/400 (51%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 17  LKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 77  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I+  SP++R+ L+F
Sbjct: 131 HIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIARSPRERQTLLF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I T+A+    + V V +A+ + + +   +   L     R  A+  +L  H  +
Sbjct: 191 SATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFYHLEDDGARMQALQLLLLEHKPE 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 251 SAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 311 RGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAYTFFNDKDGYKIALLEEYLER 370

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            +  EP PS   +        L   +    I G +K  + 
Sbjct: 371 DIQSEPLPSASLLGSM----PLAPAMITLQIDGGKKDKLR 406



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 20/72 (27%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           GS           +  G K K     ++  L    GI    +G I V     +V V    
Sbjct: 384 GSMPLAPAMITLQIDGGKKDKLRPGDILGALTGDKGIEGAQVGKILVTDYRAYVAVDRKV 443

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 444 AKKALGKITSGR 455


>gi|14548160|gb|AAA93186.2| DEAD family RNA helicase [uncultured crenarchaeote 4B7]
          Length = 451

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 189/366 (51%), Gaps = 10/366 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + I  ++ E G+     +Q   +   LR  DV+  A TG+GKT AFG+ +
Sbjct: 1   MNTFDELKINEDIMRSIKELGFTTPFPIQTQSIPELLRGNDVIGQAHTGTGKTAAFGIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++              L IAPTRELA+Q+  E++ +   T + V    GG  +  + 
Sbjct: 61  LQNIIH-------GGGIQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGIQL 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+    IVV TPGRL DH+    +   ++K VVLDEAD MLD+GF +DIE++L   P 
Sbjct: 114 DALRRKPEIVVATPGRLIDHLDNGSIRTDNIKHVVLDEADVMLDMGFIEDIEYVLQKIPG 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R   ++SAT+ P I  L+  Y  +A  + I S++     ID   +++   ++    +  
Sbjct: 174 NRITSLWSATMPPEILRLSDKYLNNAKNILIDSDDLSGEGIDQAFLVIKDREKHKY-LTD 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVFCST+       + L +  ++VV + G++SQ +R  ++   R  +A + 
Sbjct: 233 FINQNKGQVIVFCSTKIRTRNVARDLIKSRYKVVPIEGDMSQNKREYSMMKFRKNQADIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+P + LV++ ++ +      HR GRT RAG KG ++ ++  +     + 
Sbjct: 293 VATDVAARGIDVPRVGLVVNYDVPNQDMVYFHRIGRTARAGAKGKAITLVSYSSIGDWKF 352

Query: 359 LFREAN 364
           + ++  
Sbjct: 353 IKKQIK 358


>gi|120600080|ref|YP_964654.1| ATP-dependent RNA helicase SrmB [Shewanella sp. W3-18-1]
 gi|146291991|ref|YP_001182415.1| ATP-dependent RNA helicase SrmB [Shewanella putrefaciens CN-32]
 gi|120560173|gb|ABM26100.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145563681|gb|ABP74616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 419

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 9/385 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      + E+L   G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RFS  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRFSGQA--RILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+                        R      ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  TR  V+     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 RQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRV---IEELRPKNKE 382


>gi|296086337|emb|CBI31778.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV +E          +     GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLC--VYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  L + Y K+ + ++    + +        Y                I  +  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKR-DADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVE 376
                  P  ++E
Sbjct: 479 GCKFSELPRIAIE 491


>gi|225446899|ref|XP_002284103.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 666

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 129/373 (34%), Positives = 199/373 (53%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I Q I  AL+ +G   L  +Q A+L P ++ +D++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 122 IAQEIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKVIQYN 181

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      PLAL +APTRELA QV +E          +     GG  + R+   L  G  
Sbjct: 182 AKHGRGRNPLALVLAPTRELARQVEKEFCESAPNLDTLC--VYGGTPISRQMNSLDYGVD 239

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D I+   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P+ R+ +MFS
Sbjct: 240 VVVGTPGRIIDLIKRGALNLSEVQFVVLDEADQMLAVGFEEDVEMILEKLPQNRQSMMFS 299

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT+   I  L + Y K+ + ++    + +        Y                I  +  
Sbjct: 300 ATMPSWIRKLTQKYLKNPLTIDLVGDSDQKLAEGISLYSIASEMYEKASIVGPLITEHAK 359

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+   +          F+  AL G++SQ +R   L   RDG   V +ATDV
Sbjct: 360 GGKCIVFTQTKR-DADRLAYAMARNFRCEALHGDISQSQRERTLSGFRDGHFNVLVATDV 418

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++L+IH EL ++ E  +HRSGRTGRAG+KG ++ +  +   R    + R+ 
Sbjct: 419 AARGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILIYAEQQARTVRFIERDI 478

Query: 364 NVSVVWEPAPSVE 376
                  P  ++E
Sbjct: 479 GCKFSELPRIAIE 491


>gi|160876752|ref|YP_001556068.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS195]
 gi|160862274|gb|ABX50808.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268952|gb|ADT95805.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 419

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 184/385 (47%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLNAMGHHSPTTIQQETIPSALEQRDILARAPTGTGKTASFLLPSLQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RF+  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRFAGQA--RILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+             +          R      ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 RQEDVKRTIVFVKTRDIVSSLEGQLLKVGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRV---IEELRPKNKE 382


>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
          Length = 546

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 190/390 (48%), Gaps = 13/390 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE +   +     + + GY   T VQ+  +   L  +D++  AQTGSGKT AF L  
Sbjct: 92  ITTFEEVEFFESTKATIGKCGYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPA 151

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+ E       +   +P  L I+PTREL +Q+  E       T     V  GG +V 
Sbjct: 152 ITKLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTHGTMYRPVVAYGGTAVG 211

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            + + L+ G +I+VGTPGRL D +    + +  +  ++LDEAD MLD+GF  +I      
Sbjct: 212 YQLKQLEGGCNILVGTPGRLLDFLNRGQVQLDQISVLILDEADRMLDMGFEPEIRKIVSN 271

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  KR+ LMFSAT    I  +A  +  + + + +       SDI  R + V    +
Sbjct: 272 YSMPETGKRQTLMFSATFPEEIQRIANEFLSNYLFLTVGRVGGATSDITQRIIEVDEFGK 331

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL   G    +VF  T+ +       L++  F   ++ G+  Q+ER  AL+  R
Sbjct: 332 REKLSEILSATGVDRTLVFVETKRNADFLATYLSQESFPTTSIHGDRFQREREEALRDFR 391

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G A V +AT VAARG+D+PD++ V++ +L +N E  +HR GRTGR G +G++     + 
Sbjct: 392 SGLAPVLVATSVAARGLDIPDVKHVVNYDLPNNIEEYVHRIGRTGRIGNQGLATAFFHKE 451

Query: 352 ----MQRRAERLFREANVSVVWEPAPSVEA 377
               + R   ++  +A   V      + EA
Sbjct: 452 KDAPLARALIKVLSDALQDVPDFLEAAAEA 481


>gi|306821005|ref|ZP_07454624.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550946|gb|EFM38918.1| ATP-dependent RNA helicase DbpA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 387

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 200/368 (54%), Gaps = 8/368 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     +   LS+      T +QE  +   L++++++  AQTG+GKT+AF L +
Sbjct: 1   MAEFKDLKIKAELVSQLSKLRISTPTQIQEEAIPIILKKRNLIAKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             T+  EN R      P  + ++PTREL+ Q  +  + L     +  A  +GG    ++ 
Sbjct: 61  -MTMTDENLRL-----PQTVILSPTRELSNQTKKVFDDLNVDKKLSCANIVGGHDFKKQE 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               + + I+V TPGRL +HIR   +N+ H+   ++DEAD+ML+ GF +DI  + D  P 
Sbjct: 115 NKFVSNSQIIVATPGRLLEHIRSGNINMKHISRFIIDEADQMLEYGFLEDIVLLKDKLPD 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K ++++ SAT+   I  LAK   K+ V++++  E     +I+          +++ +  +
Sbjct: 175 KLQIVLLSATMPKPIIDLAKKLMKNPVKIDVTKEKTVTENIEQILFHTTEKFKNDTLKFV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +    +I+FC+++ +  +  + ++   +    + G+ SQ++R + L   R  + +  
Sbjct: 235 LEEYRPFMSIIFCNSKKNAEKLNEYMSISGYDCDIIHGDFSQKKREHILNEFRKMKFQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           ++TD++ARG D+  +  VI+ E+ ++    +HR GRTGRA + G+++ +I +  +++ E+
Sbjct: 295 VSTDLSARGFDIDGVTHVINYEVPTDYNYYIHRIGRTGRAEKTGIAISLIDEKDEKKIEK 354

Query: 359 LFREANVS 366
           + +  N+ 
Sbjct: 355 ISQRFNIK 362


>gi|301166278|emb|CBW25853.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
          Length = 654

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 113/377 (29%), Positives = 204/377 (54%), Gaps = 7/377 (1%)

Query: 1   MKIFE-----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           MK  +     N+   + +AL+  G+   + +Q+  + P L +KD+   A+TGSGKT +F 
Sbjct: 1   MKTTKEFVEYNLQPELIKALNSHGFKEASEIQDLTIKPILEKKDIFALAETGSGKTGSFA 60

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + +   LL E    +P+     + ++PTRELA Q  +  E + A+ G+  +  IGG  + 
Sbjct: 61  IPIMEILLEEKALDNPSQ--QIVILSPTRELAQQTNKFFEQVGAELGIKSSCIIGGEKIE 118

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++  +L+ G H++V TPGRL D  + K +++++  AVV DEAD + D+GF+ DIEFIL+ 
Sbjct: 119 KQIEELKEGVHVLVATPGRLNDLTKQKEIDLANCLAVVFDEADRLFDMGFKKDIEFILNG 178

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK R+++M SAT +  +   A  +    + + +  E+    +ID++  ++  +++   +
Sbjct: 179 IPKTRQLIMVSATTNMDVLNTAFKFGSQPLEIKLNEESILVDNIDHKIAMIDKNEKMPLL 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V  L+ H    AI+FC+T+       + L +  F+   +SG + Q +R+  ++  R    
Sbjct: 239 VKQLQTHEDAYAIIFCNTQFQTHLVAEWLKKMNFKAKPISGRMPQNKRTRLMEEFRSKET 298

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + + TDVAARG+D+ D+ LVI+ +L +   + +HR GRTGRAG+ G ++          
Sbjct: 299 TILVCTDVAARGLDIKDVNLVINFDLPNEAASYVHRIGRTGRAGKDGQAISFCSFEDCEN 358

Query: 356 AERLFREANVSVVWEPA 372
            + +      S+     
Sbjct: 359 LDPISEFIGGSIPKMDL 375


>gi|291616471|ref|YP_003519213.1| DbpA [Pantoea ananatis LMG 20103]
 gi|291151501|gb|ADD76085.1| DbpA [Pantoea ananatis LMG 20103]
          Length = 459

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 206/409 (50%), Gaps = 16/409 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P    + L E GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ 
Sbjct: 1   MTAFSSLNSLPDSQLDNLREMGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       S      AL + PTRELA QV   L  L   T  +  + + G      
Sbjct: 61  LLQHID------SAHFQTQALILCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DHI+ + L +  L+ +VLDEAD ML++GFRDD+E I+ ++
Sbjct: 115 QRDSLVHAPHIVVGTPGRILDHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAAT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    I  L++ +Q++A+ V     +   +             + + ++
Sbjct: 175 PASRQTLLFSATWPEGIAALSQRFQREALSVVTEEVSELPAIEQQFIEASHGE-KLSLLI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L      + +VFC+T+         L       + L G+L Q++R   L    +G  R
Sbjct: 234 SLLSERQPSSCVVFCNTKRECDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ +L+ +PE  LHR GRT RAG +G +V  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKLLSLVVNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       + W  A S+     + + + L   +    I G  K  + 
Sbjct: 354 HALEDFLQQKLPWVAASSL-----KKSSKALPAAMMTLCIDGGRKAKIR 397



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L   +G     IG I +     +V + A         +
Sbjct: 383 MMTLCIDGGRKAKIRPGDILGALTGEAGYRADQIGKIDLTATHAYVAIEAAQAKHALVKL 442

Query: 526 KLDK 529
           K  K
Sbjct: 443 KQGK 446


>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
          Length = 475

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 134/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 46  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 105

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 106 KTQALQPRAPREGQPGERRGRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 165

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 166 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 225

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I  +    S+I      
Sbjct: 226 IDDIDTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPERIEITQKIESRSNIAQTVHY 285

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 286 VDDRDHKDRLLDHLLRDVALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 345

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 346 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 405

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   VE    R A
Sbjct: 406 VSLVHHAEQGALKRIERFVRAPL---PVNVVEGFEPRKA 441


>gi|192360552|ref|YP_001981465.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
 gi|190686717|gb|ACE84395.1| ATP-dependent RNA helicase RhlB [Cellvibrio japonicus Ueda107]
          Length = 439

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 187/369 (50%), Gaps = 4/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+++ G+   + +Q   L   L+ KDV+  AQTG+GKT AF  A+   LL  
Sbjct: 26  DLSPELMHAIADVGFKYCSPIQAQSLPHALQGKDVVGKAQTGTGKTAAFLAAIIDDLLKN 85

Query: 66  NDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                  +    AL IAPTREL +Q+  + + L   T   +  +  G     ++RR  + 
Sbjct: 86  PITEKRYAGEARALVIAPTRELVIQIAEDAKALCKYTDLKIHTLVGGMDYTKQQRRLHET 145

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D    K + +  L+ +V+DEAD MLD+GF   +  I+  +P +    
Sbjct: 146 LVDILVATPGRLLDFCGNKDVYLDQLEVLVIDEADRMLDMGFIPQVRQIVRQTPHREDRQ 205

Query: 184 --MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  L + +    V + I  E+  ++ +D    LV+  ++   + N+++ 
Sbjct: 206 TLFFSATFTDDVHNLVQQWTYKPVTIEIEPESVANARVDQHVYLVSTEEKYTLLYNLIQQ 265

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A++ IVF + R       + L  H  +   LSGE++Q +R + L   ++G  +V +AT
Sbjct: 266 EHAESMIVFANRRDECRDLYEKLLRHGIKAGLLSGEITQNKRVSTLDAFKNGDIKVLVAT 325

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L   PE+ +HR GRTGRAG+ G S+    ++   R E + +
Sbjct: 326 DVAGRGIHISGISHVVNFTLPEEPEDYVHRIGRTGRAGKSGTSISFACEDDALRLEPIEK 385

Query: 362 EANVSVVWE 370
                +  E
Sbjct: 386 LLGKPIKCE 394


>gi|220918247|ref|YP_002493551.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956101|gb|ACL66485.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 488

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 190/387 (49%), Gaps = 9/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+ +   +AL   G+ + T +Q   + P L  +DV+ +A TG+GKT AF L +   L   
Sbjct: 21  NLSEKTLQALERAGFEHPTPIQAQAIPPALGGRDVIGAAATGTGKTAAFLLPIIERLGGG 80

Query: 63  ----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                           P AL +APTRELAVQ+  EL+       V  A+ IGGV +  + 
Sbjct: 81  APAPKDRPAAAHGKPGPRALVLAPTRELAVQIAGELDRFGRGRHVRGALVIGGVGMGAQS 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++   ++V TPGRL DH++     +  L+ +VLDEAD MLD+GF   ++ IL   PK
Sbjct: 141 AALRDH-EVIVATPGRLVDHLQQGTARLDGLEVLVLDEADRMLDMGFAPQLKRILARVPK 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT++  +   A+ + +D VRV +A         + R  L    ++   ++  
Sbjct: 200 VRQTLLFSATMAGEVAEFARAHLRDPVRVEVARSGTLAERAEQRVFLPEQREK-LPLLMA 258

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + +VF  T+    +  K L     +V  +  + SQ +R  AL+  RDG+ RV 
Sbjct: 259 LLEEDDLSTLVFTRTKRRADKVAKALQRAGHKVARIHADRSQAQRRMALEGFRDGQYRVL 318

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ ++  V++ +L   PE+ +HR GRT R    G +              
Sbjct: 319 VATDIAARGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARMAASGRASAFASPEELDLLRD 378

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           + R     +     P   A  + + QR
Sbjct: 379 IERLTRAPIPRAEVPREHATFQAELQR 405


>gi|322493239|emb|CBZ28524.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 389

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + + + +   GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L  
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                           AL ++PTRELAVQ       +    G+    CIGG S   + R 
Sbjct: 78  ACDPHTREA------QALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRR 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G HI+ GTPGR+ D IR K L ++ LK +VLDEADEML  GF+  I  I    P  +
Sbjct: 132 LESGVHIISGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQ 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +   +  +    K   + A  +    E    S   Y   +    ++ + ++ +  
Sbjct: 192 IILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELYD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VFC+TR  V +  K +    F V A+ G++ Q ER   ++  R+G +RV I 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  + LV+  +L  + E  +HR GRTGR GR G+++  +  +  R    + 
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLSREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 372 QFYATQIEELPA 383


>gi|307190551|gb|EFN74538.1| ATP-dependent RNA helicase DDX42 [Camponotus floridanus]
          Length = 769

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + + + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 261 FDDALMKTIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQR 320

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL+ Q+ +E +       + V  C GG S   + + L++GA 
Sbjct: 321 E-LKAGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVCCCYGGGSKWEQSKALESGAE 379

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 380 IVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 439

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA++   D +R+        ++D+    ++   +   + N ++  L    +
Sbjct: 440 ATFKKKVEKLARDVLTDPIRIVQGDVGEANTDVTQHVIMFHNNPSGKWNWLLQNLVEFLS 499

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDV 303
             +++   T+   +       +     V L  G++ Q ER+  +   +       +ATDV
Sbjct: 500 AGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKDVSTLVATDV 559

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE- 362
           AARG+D+P ++ V++ +++ + +   HR GRTGRAG KG++  ++ +  +  A  L R  
Sbjct: 560 AARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDKEFAGHLVRNL 619

Query: 363 --ANVSV 367
             AN  V
Sbjct: 620 EGANQEV 626


>gi|237809398|ref|YP_002893838.1| ATP-dependent RNA helicase RhlB [Tolumonas auensis DSM 9187]
 gi|259585616|sp|C4LB49|RHLB_TOLAT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|237501659|gb|ACQ94252.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 425

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 191/385 (49%), Gaps = 10/385 (2%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F  +   PQV+   +  +G+ N T +Q   +   L  K++   AQTG+GKT+AF     
Sbjct: 10  TFAELGLEPQVLA-GVEAKGFHNCTPIQAETIPLLLTGKNIAGQAQTGTGKTIAFLAGTF 68

Query: 60  STLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           + LL  +       + P  L +APTRELAVQ+  +   +    G  + +  GG    ++ 
Sbjct: 69  NYLLTHSASAERRQNQPRVLIMAPTRELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ G  +++GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI F+    P 
Sbjct: 129 AVLQEGVDLLIGTTGRIIDYLKQGIIDLGAIQVVVLDEADRMFDLGFIKDIRFLFRRMPP 188

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R  ++FSAT+S  +  LA  +  +   + I  E      I       +  D+   ++
Sbjct: 189 PAQRLNMLFSATLSLRVQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNEDKMLLLL 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AI+F +T+         L     +V  L+G++ Q++R   L+    G   
Sbjct: 249 TLMEEDWPEKAIIFANTKHGCEDVHAWLQADGHRVGLLTGDVPQKKRLKILEDFTAGLLD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ +PD+  V + +L  + E+ +HR GRTGRAGR G ++    ++     
Sbjct: 309 VLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFACEDYAFNL 368

Query: 357 ERLFREANVSVV---WEPAPSVEAI 378
             +    +  +    ++P+  ++ +
Sbjct: 369 PEIEEYTHHPIPVSKYDPSALLDDV 393


>gi|114603672|ref|XP_001145017.1| PREDICTED: DEAD-box protein abstrakt isoform 2 [Pan troglodytes]
          Length = 625

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 187/386 (48%), Gaps = 18/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            I    P  +       FSAT+   I   AK+     V +N+        D+      V 
Sbjct: 360 TIFSCPPLPQGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVK 419

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A+
Sbjct: 420 EEAKMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAI 478

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   
Sbjct: 479 EAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTF 538

Query: 348 I----PQNMQRRAERLFREANVSVVW 369
           I     +++    + L  EA   V  
Sbjct: 539 INKACDESVLMDLKALLLEAKQKVPP 564


>gi|70994563|ref|XP_752059.1| ATP dependent RNA helicase (Dbp1) [Aspergillus fumigatus Af293]
 gi|74671260|sp|Q4WP13|DED1_ASPFU RecName: Full=ATP-dependent RNA helicase ded1
 gi|66849693|gb|EAL90021.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           Af293]
          Length = 674

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 193/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                    PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I       +  +R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 429

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 430 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRER 489

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 490 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 549

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     ++ +   R    L +EA+  V 
Sbjct: 550 ATAFFNRSNRGVVRELIDLLKEAHQEVP 577


>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
 gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
           gypseum CBS 118893]
          Length = 1183

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 185/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 562 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 620

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 621 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 680

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 681 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 740

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      + + +   +    +I     +     +          +     +
Sbjct: 741 FPRNMEALARKTLSKPIEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 800

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 801 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 860

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 861 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 920

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P  + +             FLD ++  ++K
Sbjct: 921 LKQSGQPVPEPVQKMVT-----------AFLDKVKEGKEK 949


>gi|296273501|ref|YP_003656132.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097675|gb|ADG93625.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 412

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 196/379 (51%), Gaps = 5/379 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  F+  +   I ++L+E  Y+  T +QE ++   L  KD++  AQTGSGKT +F L + 
Sbjct: 1   MSFFKLKLSDQINKSLTENRYIKPTEIQEKVIPLVLEHKDIIAKAQTGSGKTASFVLPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +    +N    P      L + PTRELA+QV                V           +
Sbjct: 61  NLWYKQNYEGKPKI--RCLVLTPTRELALQVATAFLTFSKYMNKKPKVVSVIGGESIGEQ 118

Query: 120 --DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             ++Q G  ++V T GRL D ++ K +++S+L   VLDEAD+MLD GF +++E +L+  P
Sbjct: 119 LLNIQKGCDVIVATTGRLLDILKKKQMDLSNLDFFVLDEADKMLDFGFEEELELLLEVLP 178

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+ L+FSAT    +  +A    ++ + ++I +E      I+ R + V   +R   + +
Sbjct: 179 KKRQNLLFSATYPTKMLNIASKITENPIEISIENEEATVQSINQRVIEVNKENRSALLRH 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++    +  +VF + + S         ++ F+  +  G+L Q+ER+  L+  +  + +V
Sbjct: 239 LIKEENWQQVLVFMANKRSCDNLAFKFRKYGFEAESFHGDLIQEERNETLEGFKAKKIKV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+ + ++  V++ +L     + +HR GRTGRAG+ G++V  I    +    
Sbjct: 299 LFATDIAARGLHIENISCVVNYDLPRATADYIHRIGRTGRAGKSGIAVSFISHEDKEHFA 358

Query: 358 RLFREANVSVVWEPAPSVE 376
            + + +++S+  E     E
Sbjct: 359 LIEKRSDISLEKEQIKGFE 377


>gi|86143316|ref|ZP_01061718.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
 gi|85830221|gb|EAQ48681.1| hypothetical protein MED217_09040 [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 204/456 (44%), Gaps = 13/456 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+    + +  A+ + G+   T +QE         +DV+  AQTG+GKT A+ L +
Sbjct: 1   MASFEDFKINKQLRYAIEDLGFTTPTPIQEQAFGVVKSGRDVVGIAQTGTGKTFAYMLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +FS    P  L + PTREL +QV  ++E     + + V    GG +++ ++
Sbjct: 61  LENL-----KFSKQINPRVLILVPTRELVLQVVEQIEAYGKYSSIRVVGVYGGTNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  I+VGTPGRL D    + L +  +K +++DE D MLDLGFR  +  I D  P+
Sbjct: 116 EAVIQGCDILVGTPGRLYDLAVSRALQLKSVKQLIIDEVDVMLDLGFRFQLVNIFDLLPQ 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAI 235
           +R+ +MFSAT++  +  L   +     R+ +A        I+                 I
Sbjct: 176 RRQNIMFSATMTDEVDELMDTFFTTPERIQVALSGTPLDAIEQHYYEVPNFYTKANLLNI 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +   +    K  I   + + +   F ++      +V  +    +Q  R NA++    G  
Sbjct: 236 LLKDKKEFKKTLIFVSNKKLADRLFKELEEVFGNEVGVIHANKTQNYRINAIEQFDAGTY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ + TDV ARG+DL ++  V + ++    EN +HR GRTGRAG  G S  +   + Q R
Sbjct: 296 RILVTTDVMARGLDLDEVTHVFNVDVPRFAENYMHRIGRTGRAGTTGKSYLLGTPDEQER 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            E + +  ++ +     P    + +R      ++P +++ I    K+      + H+ ++
Sbjct: 356 KEAIEKLMDMQLPQADLPEGLEVSKRLIPE--EEPNYVE-INNPTKRDETRGASFHEKKE 412

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
                    +      ++         ++  R + R
Sbjct: 413 KNKKVNLGGKYRRELAKKYKKPKTRGDKNYNRRNKR 448


>gi|320170169|gb|EFW47068.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 712

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 114/383 (29%), Positives = 194/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +P+ I + L++RG    T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 266 IKTFREMKLPKSIIKHLAKRGIKAPTPIQIEGIPVALSGRDMIGIAFTGSGKTLVFSLPI 325

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  +  F+    P  L + P+RELA Q    L+             + VA+C+G
Sbjct: 326 VMFALEQELKLGFTSGEGPYGLILVPSRELAKQTYDNLQAYAKVLATEGFPLLRVALCMG 385

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV++  +   +++G H++V TPGRL D ++   +N+   + + LDEAD M+D+GF +D+ 
Sbjct: 386 GVNMREQLDSMRDGVHLMVATPGRLIDLLQKGKVNLDICRYLTLDEADRMIDMGFEEDMR 445

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V VN+      + D+      V +  
Sbjct: 446 TIFSFFKAQRQTLLFSATMPKKIQDFAKSALVRPVIVNVGRAGAANLDVVQDVEYVNVEA 505

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R   ++  L+       I+F   +A V    + L     + VA+ G  SQ+ER  A++  
Sbjct: 506 RLVYLLQCLQKTAPP-VIIFAEKKADVDEIHEYLLLKGVEAVAIHGGKSQEEREWAIRSF 564

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--- 347
           +D    V +ATD+AA+G+D PD++ VI+ ++    E  +HR GRTGR G+ G +      
Sbjct: 565 KDHLKDVLVATDIAAKGLDFPDIQHVINFDMPEEIETYVHRIGRTGRCGKTGTASTFVNK 624

Query: 348 -IPQNMQRRAERLFREANVSVVW 369
            +P+++    + L  EA+  +  
Sbjct: 625 TVPESVLLDVKHLLIEAHQKIPP 647


>gi|297581406|ref|ZP_06943329.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
 gi|297534244|gb|EFH73082.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC385]
          Length = 460

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 29/96 (30%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L   S +  + IG I + P   +V V     
Sbjct: 402 DILGALTSDSELTAEHIGKINLFPMRAYVAVHKKVA 437


>gi|153825787|ref|ZP_01978454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|254291477|ref|ZP_04962269.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
 gi|149740510|gb|EDM54625.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MZO-2]
 gi|150422667|gb|EDN14622.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae AM-19226]
          Length = 460

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA 437


>gi|94969920|ref|YP_591968.1| DEAD/DEAH box helicase-like [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551970|gb|ABF41894.1| DEAD/DEAH box helicase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 423

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 204/374 (54%), Gaps = 8/374 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P   V+ + L    ++N T VQE  + P L  +D+L +AQTG+GKT+AF +  
Sbjct: 26  LTTFNDMPLSDVLKQRLEAAQFINPTPVQEKAIPPALDGRDILATAQTGTGKTLAFIIPA 85

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R +       L + PTRELA+QV    E L  K     A+ +GG S   + 
Sbjct: 86  LEML-----RDTEPCGVQVLILVPTRELAMQVHGVYEQLKGKKLKSAALVMGGTSERNQI 140

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +++GA +VV TPGRL D++  + +++S ++ +VLDEAD M+D+GF   I+ IL + P+
Sbjct: 141 QSIRSGARVVVATPGRLEDYMGRRLVDLSQVEMLVLDEADRMMDMGFLPAIKRILRALPR 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++ L FSAT+ PA++ + ++   +AVRV I S  +  + ++  A+ V +  + +A+  +
Sbjct: 201 DKQTLCFSATMGPAVSGIVQDCLYNAVRVEIGSILKPAAAVELHAIEVPIMGKKDALRQL 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K  +VF  T+    R  K L    F    + G+ SQ +R+ AL     G  +V 
Sbjct: 261 LYEQEGK-TLVFARTKRGTERLAKELIRDGFSAAMIHGDRSQSQRNAALAAFDKGSIKVL 319

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ +L   PE+ +HR GRTGRAG  GM+  ++          
Sbjct: 320 VATDVAARGLDVDDIAHVINFDLPQVPEDFIHRVGRTGRAGATGMATSLVSGAEVFELRN 379

Query: 359 LFREANVSVVWEPA 372
           + R   + +     
Sbjct: 380 IERTLKLKIARRDL 393


>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
          Length = 455

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 205/418 (49%), Gaps = 10/418 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L + 
Sbjct: 24  STFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+         +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++  
Sbjct: 84  QELLSNRQA---EQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVL 140

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    HIVVGTPGRL DH    KG ++  +K +VLDEAD++L++ F   ++ IL   PK
Sbjct: 141 SIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILSEMPK 200

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR  +FSAT++  +  L +   ++  +V ++S+      +      V   D+D  ++++
Sbjct: 201 DRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHV 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T  S      +L     + +++SG++SQ +R  AL   +     + 
Sbjct: 261 LNERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNIL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q   +    
Sbjct: 321 ICTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVL 380

Query: 359 LFREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +     +        E +  +    DA+RI    L         + + D      D
Sbjct: 381 IEQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKKRRNVGDDDEEVED 438


>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
          Length = 944

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 115/464 (24%), Positives = 214/464 (46%), Gaps = 17/464 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 262 SLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFFVPILERLLFR 321

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         + + PTRELA+Q       L   T +  ++ +GG+S+  +  +L+   
Sbjct: 322 PKKIP---TTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLRP 378

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I+V TPGR  DH+R     N+  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 379 DIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 438

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + S+ +  + +              R   + ++ + 
Sbjct: 439 FSATMTSTVDRLIRVGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAHLCKT 498

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   +          L G ++Q +R ++++  RDG+    +AT
Sbjct: 499 FYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLLAT 558

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  ++ VI+ E   + E  +HR GRT RAGRKG +V +  +  ++  +   +
Sbjct: 559 DLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVK 618

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                       +   I   DA ++       + I G E ++ +++  + +  ++A   +
Sbjct: 619 AGKAQGAKI---TSRVIAPADADKL------QEEIDGMEDEIDEIMQEEKEERQLAQAEM 669

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           ++ + G    E    +     R  F  +    K     +D   G
Sbjct: 670 QV-KKGENLIEHEAEIKSRPKRTWFETEHDKKKAKQAGKDELNG 712


>gi|297842017|ref|XP_002888890.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297334731|gb|EFH65149.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L   
Sbjct: 47  ELKPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS 106

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    GV    C+GG SV  ++R LQ+G 
Sbjct: 107 ------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV 160

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 161 HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVF 220

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I      +     +   + ++      
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +    +R    + R  N
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTTEDERMLADIQRFYN 400

Query: 365 VSVVWEP 371
           V V   P
Sbjct: 401 VVVEELP 407


>gi|156972680|ref|YP_001443587.1| ATP-dependent RNA helicase RhlB [Vibrio harveyi ATCC BAA-1116]
 gi|189040086|sp|A7MXT4|RHLB_VIBHB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156524274|gb|ABU69360.1| hypothetical protein VIBHAR_00338 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 196/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LKPQVTEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  +   L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  EHEGRKPTQPRAIIMAPTRELAIQIFNDAAPLIASTGLKAALAYGGESYDKQLAKLQDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  N+++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNEDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILEQFTRGEVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + DA  ++QD
Sbjct: 367 NLPPIEEYIEHAIPVSDYDASALIQD 392


>gi|47227893|emb|CAG09056.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 482

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 92/371 (24%), Positives = 176/371 (47%), Gaps = 10/371 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 97  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 156

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +  + D         AL I PTRELA+QV +  ++      GV V    GG ++  +   
Sbjct: 157 IDLKRDCI------QALVIVPTRELALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMR 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H+V+ TPGR+ D I+     +S ++ +VLDEAD++L   F   +E IL    K+R
Sbjct: 211 LDETVHVVIATPGRILDLIKKGVAKVSQVQMIVLDEADKLLSQDFVGMMEEILGFLSKQR 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 271 QILLYSATFPLSVQKFMTSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 329

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 330 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 389

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 390 TDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIE 449

Query: 361 REANVSVVWEP 371
            +    +   P
Sbjct: 450 EQLGTEIKPIP 460


>gi|156098189|ref|XP_001615127.1| eukaryotic initiation factor [Plasmodium vivax SaI-1]
 gi|148804001|gb|EDL45400.1| eukaryotic initiation factor, putative [Plasmodium vivax]
          Length = 388

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FENI   + +   +   G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 15  TSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGAL 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          S    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 75  NCVNRN------LSETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 128

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 129 ALSNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 188

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +    V++ +  +      I      +     +   + ++
Sbjct: 189 TQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + RV 
Sbjct: 249 YESLTITQAVVFCNTKLKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  +    
Sbjct: 309 ISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 368

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 369 IEQYYSTQIDEMPM 382


>gi|15642559|ref|NP_232192.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587883|ref|ZP_01677639.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|153819936|ref|ZP_01972603.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|153823551|ref|ZP_01976218.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227082681|ref|YP_002811232.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254225949|ref|ZP_04919551.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|254851104|ref|ZP_05240454.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255744466|ref|ZP_05418418.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262154711|ref|ZP_06028837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|298500611|ref|ZP_07010415.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
 gi|9657150|gb|AAF95705.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547853|gb|EAX57938.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 2740-80]
 gi|125621575|gb|EAZ49907.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae V51]
 gi|126509518|gb|EAZ72112.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae NCTC 8457]
 gi|126518935|gb|EAZ76158.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|227010569|gb|ACP06781.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae M66-2]
 gi|254846809|gb|EET25223.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MO10]
 gi|255737991|gb|EET93384.1| ATP-dependent RNA helicase DbpA [Vibrio cholera CIRS 101]
 gi|262030551|gb|EEY49189.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae INDRE 91/1]
 gi|297540780|gb|EFH76837.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MAK 757]
          Length = 460

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 215/401 (53%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +
Sbjct: 10  NLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  ++  L      + V    GG+ +  +   L++G
Sbjct: 70  RFRV------QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+
Sbjct: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  +A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H  
Sbjct: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +++VFC+T+  V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + +LS +PE  +HR GRTGRAG KG++      N   R  ++    +
Sbjct: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +++     P   A       R     +    I G +K  V 
Sbjct: 364 IAIEPSTLPQPAA-----GARPYAANMVTIQIDGGKKDKVR 399



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 5/117 (4%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 342 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
            ++  L     +  + IG I + P   +V V          T  L+K    K  G +
Sbjct: 402 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA-----TKALNKIANGKMKGRQ 453


>gi|74006744|ref|XP_861568.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 12 [Canis familiaris]
          Length = 653

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 195/381 (51%), Gaps = 13/381 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            S + ++       +    P++L +APTRELAVQ+  E      ++ V   V  GG  + 
Sbjct: 239 LSQIYSDGPGEALRAMKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG 298

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I++ 
Sbjct: 299 QQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ 358

Query: 176 SPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                      +MFSAT    I  LA+++  + + + +        +I  + V V  SD+
Sbjct: 359 DTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDK 418

Query: 232 DNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   
Sbjct: 419 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 478

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++     +
Sbjct: 479 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 538

Query: 351 ---NMQRRAERLFREANVSVV 368
              N+ +    L  EA   V 
Sbjct: 539 RNINITKDLLDLLVEAKQEVP 559


>gi|225437591|ref|XP_002277419.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
          Length = 771

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 188/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      +  A++++GY   T +Q       L  +D++  A+TGSGKT AF L +
Sbjct: 225 IKTFEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPM 284

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +    +    P+ +  APTRELA Q+  E +      G+ V+   GG+S   + 
Sbjct: 285 IVHIM-DQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQF 343

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IV+ TPGRL D I+ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 344 KELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 403

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D VRV +      + DI     ++         +  
Sbjct: 404 DRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLD 463

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF S +A+V      L +   ++ AL G+  Q  R + LQ  + G   
Sbjct: 464 KLPGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYH 523

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V IATDVAARG+D+  ++ V++ +++ + +  +HR GRTGRAG + G +  +I     R 
Sbjct: 524 VLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARF 583

Query: 356 AERL---FREANVSVVWE 370
           A  L      A  +V  E
Sbjct: 584 AGELVGSLIAAGQNVPME 601


>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
          Length = 771

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 188/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      +  A++++GY   T +Q       L  +D++  A+TGSGKT AF L +
Sbjct: 225 IKTFEDCGFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPM 284

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +    +    P+ +  APTRELA Q+  E +      G+ V+   GG+S   + 
Sbjct: 285 IVHIM-DQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQF 343

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L++G  IV+ TPGRL D I+ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 344 KELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 403

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D VRV +      + DI     ++         +  
Sbjct: 404 DRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLD 463

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF S +A+V      L +   ++ AL G+  Q  R + LQ  + G   
Sbjct: 464 KLPGMIDDGDVLVFASKKATVDEIESQLGQKGLKIAALHGDKDQASRMDILQKFKSGIYH 523

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V IATDVAARG+D+  ++ V++ +++ + +  +HR GRTGRAG + G +  +I     R 
Sbjct: 524 VLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARF 583

Query: 356 AERL---FREANVSVVWE 370
           A  L      A  +V  E
Sbjct: 584 AGELVGSLIAAGQNVPME 601


>gi|332704723|ref|ZP_08424811.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554872|gb|EGJ51916.1| DEAD/DEAH box helicase domain protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 517

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 127/366 (34%), Positives = 195/366 (53%), Gaps = 6/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q I   +   GY   T +Q   +   L  KDV+  AQTG+GKT AF L L   LL +
Sbjct: 7   SLDQRIMAGILAAGYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLLQRLLND 66

Query: 66  NDRFSPASAPL-ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           N   +P   P+  L +APTRELAVQ+ +    L  +TG+  AV IGGV    + + L   
Sbjct: 67  N---APTRGPIRVLVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKAL-RQ 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A + V  PGRL D +    +++S + A+VLDEAD MLD+GF  D+  ++   P++R+ ++
Sbjct: 123 ATVAVACPGRLVDLMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQNML 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I +LA++           S     + + +    VA S + + +  +L   G 
Sbjct: 183 FSATMPAEIRSLAESG-LRDPVTVQVSNTAPAATVSHALYPVAGSRKQDLLEKLLNDLGK 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +A+VF  T+       + LA   F V +L G LSQ  R  A+   R+G+ RV +ATD+A
Sbjct: 242 NSALVFTRTKHRAKGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRVMVATDIA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID   + LV++ +L    E   HR GRTGRA R G +V ++    + + + + R  N
Sbjct: 302 ARGIDCERVSLVVNFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPEDESQVKFIERSLN 361

Query: 365 VSVVWE 370
           + +  +
Sbjct: 362 LRIERK 367


>gi|152995916|ref|YP_001340751.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836840|gb|ABR70816.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 398

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 176/371 (47%), Gaps = 7/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A++E GY   T VQ+  +   L  KD++ +AQTG+GKT AF L L        
Sbjct: 8   LSSPLVQAITELGYKTPTPVQKQAIPIILSGKDLIATAQTGTGKTAAFVLPLLER--FTK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELAVQV   +      T +      GGV    ++  L  G  
Sbjct: 66  AGTLRGKRIRVLILVPTRELAVQVEASVAQYAKHTKLTSMAVYGGVDTEAQKERLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L+   LK +VLDEAD M+D+GF  DI  I++  P+ R+ L+FS
Sbjct: 126 ILVATPGRLLDLAHQRALHFDELKVMVLDEADRMVDMGFVGDINKIMERLPENRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAV-----RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           AT++  +  LA ++    +      ++I+   R  ++I    + V    +   + +++  
Sbjct: 186 ATMTDDVRALAFDFSDSKMTDLAAEISISPNVRAAANIKQWLITVDKDTKSALLSHLINE 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++F   +   ++    LA+       + G+ SQ  R   L   + G  +  +AT
Sbjct: 246 QKWDQALIFIEKKHGAAKLVDQLAKRGIVADCIHGDRSQAMREKILAQFKSGELKYLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            VAARG+D+ +L  V++ +L   PE  +HR GRTGRAG  G ++  +     +    +  
Sbjct: 306 GVAARGLDIGELSRVVNYDLPFKPEEYIHRIGRTGRAGALGEAISFVAMGDFKNLCAIES 365

Query: 362 EANVSVVWEPA 372
                +  +  
Sbjct: 366 RLKHIIDRKEI 376


>gi|71065503|ref|YP_264230.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
 gi|71038488|gb|AAZ18796.1| putative ATP-dependent RNA helicase [Psychrobacter arcticus 273-4]
          Length = 396

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 183/378 (48%), Gaps = 9/378 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F ++P       A+S+ G+  LT +Q  IL   L  +D +  AQTG+GKT  F L +
Sbjct: 16  FTTFTDLPLSAATLRAVSDLGFTELTPIQAKILPHTLANQDAIGQAQTGTGKTATFLLTI 75

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              LL      D       P A+ +APTRELA Q+  +   L   T +     +GG +  
Sbjct: 76  MEALLKRPFAADEERHLGEPRAVVMAPTRELAQQIFDDCIALNKYTSLHSVCIMGGTNYE 135

Query: 116 -RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ++    +    I++ TPGRL D +    + +  ++ +VLDEAD MLD+GF  DI+ ++ 
Sbjct: 136 TQQHELERQYVDILIATPGRLIDLMHKGMVYLDRVEVLVLDEADRMLDMGFIPDIKRLVG 195

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +  +   V I  E++    +D    L+    + 
Sbjct: 196 RMPPNTDRQSLLFSATFNQDVMGLAYRWLHEPAFVEIEPEHKTSELVDQHFYLLTEDQKL 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+  I+     +  I+F + +  V R    L +     V LSG++ QQ+R   LQ  +D
Sbjct: 256 EAVERIITDTTVEKVIIFANRKDQVKRLYHKLRQGHKI-VMLSGDVIQQKREKYLQRFKD 314

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G A V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG+ G+S+  + ++ 
Sbjct: 315 GHASVLVATDVAGRGIHVDDVSHVINYTLPDQPDDYVHRIGRTGRAGKTGISISFVSEDD 374

Query: 353 QRRAERLFREANVSVVWE 370
                 L +  +     E
Sbjct: 375 AFNIPALEKHLDTKFKLE 392


>gi|143454043|sp|Q0INC5|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
 gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 802

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 120/426 (28%), Positives = 196/426 (46%), Gaps = 24/426 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 200 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFR 259

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA QV   +E L   T +   + +GG+S   +   L++  
Sbjct: 260 PKRVP---AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 316

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ ++
Sbjct: 317 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 376

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L        VR+      ++ + +    V +  +   N     + +   
Sbjct: 377 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 436

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       IAT
Sbjct: 437 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 496

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +  + +   + + +
Sbjct: 497 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 556

Query: 362 EANVSV---------VWEPAPSVEA--------IRERDAQRILQDPLFLDSIQGDEKKMV 404
           +A   +         V E A  +E         I+E   +RIL+      +   +     
Sbjct: 557 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 616

Query: 405 DVLLAK 410
           D + ++
Sbjct: 617 DEIYSR 622


>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
           98AG31]
          Length = 486

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 116/353 (32%), Positives = 192/353 (54%), Gaps = 7/353 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A     +   T +Q   +   L+ KD++  AQTGSGKT AF L +  +L      
Sbjct: 68  EPLCKACESLNFKTPTPIQTESIPYALQNKDIIGLAQTGSGKTAAFALPVLQSL------ 121

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +   SA  A  +APTRELA Q+ ++ + L +  GV   V +GG+ +  +   L    H++
Sbjct: 122 WDSPSAFFACVLAPTRELAYQISQQFDALGSTIGVKTVVIVGGMDMMSQAIALSKRPHVI 181

Query: 129 VGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH    KG ++ +L+ +++DEAD +LD+ F   I+ IL   PK+R+  +FSA
Sbjct: 182 VATPGRLHDHLEHTKGFSLRNLQFLIMDEADRLLDMDFGPVIDKILKVIPKERKTYLFSA 241

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +    + V+V ++++    S +    + +    +D  +V +      K+ 
Sbjct: 242 TMTTKVAKLQRASLNNPVKVEVSAKYDTVSALVQTYLFLPFKHKDTYLVYLANELSGKSL 301

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           IVF  T    SR + +L    F  V L G+LSQ  R  AL   + G   + +ATDVA+RG
Sbjct: 302 IVFTRTVHDASRLSLILRTLGFPAVPLHGQLSQSARLGALNKFKSGDQSLLVATDVASRG 361

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+P ++ VI+ +L +N ++ +HR GRT RAGR G S+ ++ Q      +R+ 
Sbjct: 362 LDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIE 414


>gi|88802750|ref|ZP_01118277.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781608|gb|EAR12786.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 411

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 118/404 (29%), Positives = 210/404 (51%), Gaps = 10/404 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F +    + I +A++E  +   + VQ+  +   L +K+V+VSAQTG+GKT AF L +   
Sbjct: 3   FSDFSFNKSILKAVAEERFQTPSLVQQEAIPLILEKKNVIVSAQTGTGKTAAFALPIIQL 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    D         +L I PTRELA+Q+    +     + +  +   GGVS+  ++  L
Sbjct: 63  LFDGQDAEKGEKKIKSLIITPTRELAIQILENFKSFSKYSNLRASAVFGGVSLEPQKEIL 122

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I++ TPGRL D      +++S ++  VLDEAD MLD+GF +DI+ I    PK+++
Sbjct: 123 SKGIDILIATPGRLIDLHTQGNIDLSAIEIFVLDEADLMLDMGFINDIKKIERFCPKQKQ 182

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LAK   K  V V I  E     +I      +   ++ +  +N+L+ 
Sbjct: 183 TLLFSATMPEKIVELAKKVIKSPVVVEINPEETTAKNIGQLLYYLPKKNKTDLCLNLLKN 242

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V +  + L ++ ++V ++ G+ +Q  R+ A++  ++  A + IAT
Sbjct: 243 TINGKIIIFRRTKFGVDKLEESLTKNGYKVASIHGDKTQGIRNKAIEDFKNKTAHILIAT 302

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ +++ +I+ ++ + PE  +HR GRTGRAG+ G++      +     + +  
Sbjct: 303 DVASRGIDITNVDAIINFDIPNVPETYIHRIGRTGRAGKSGIAFSFCSPDENAYIKLIE- 361

Query: 362 EANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQGDEKK 402
               +++  P   +     I  +  Q+  Q+       +G + +
Sbjct: 362 ----TLIERPIKVITDHLYIISKPKQKRTQENTVSKHKKGRKSE 401


>gi|312372006|gb|EFR20059.1| hypothetical protein AND_20736 [Anopheles darlingi]
          Length = 850

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 116/393 (29%), Positives = 194/393 (49%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   +    Y   T VQ+  +   L  +D++  AQTGSGKT AF + +
Sbjct: 349 INTFDDIELTEIIDNNVKLARYDKPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLVPI 408

Query: 59  ASTLLAENDRFSPASAPL--------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +        P + P+         L +APTRELA Q+  E +    ++ +  AV  G
Sbjct: 409 LNQMYKHGVSAPPPNRPMNRRKQYPLGLVLAPTRELATQIFEESKKFCYRSRMRPAVLYG 468

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G + H + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I 
Sbjct: 469 GNNTHEQMRELDRGCHLIVATPGRLEDMITRGKVGLDNIRFLVLDEADRMLDMGFEPQIR 528

Query: 171 FI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I          +R+ LMFSAT   AI  LA ++    + + +        +I      V
Sbjct: 529 RIVEDSRMPVTGERQTLMFSATFPKAIQELASDFLYRYIFLAVGRVGSTSVNITQTIFWV 588

Query: 227 ALSDRDNAIVNILRYHGAKN--------AIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             + + + ++++L     +N         ++F  T+ +     + L  + + V ++ G+ 
Sbjct: 589 EENIKRSHLLDLLSSISLQNEGDAANSLTLIFVETKKAADSLEEFLYSYDYPVTSIHGDR 648

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ ER  AL++ R GR  + +AT VAARG+D+P+++ VI+ +L S  E  +HR GRTGR 
Sbjct: 649 SQDEREEALRLFRCGRCPILVATAVAARGLDIPNVKHVINFDLPSEVEEYVHRIGRTGRM 708

Query: 339 GRKGMSVFVIPQNMQRRAE---RLFREANVSVV 368
           G  G +     +  +  A    RL  E    + 
Sbjct: 709 GNLGTATSFFNEKNRNVANGLVRLLAETGQEIP 741


>gi|254787436|ref|YP_003074865.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
 gi|237683460|gb|ACR10724.1| ATP-independent RNA helicase DbpA [Teredinibacter turnerae T7901]
          Length = 461

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 141/401 (35%), Positives = 219/401 (54%), Gaps = 14/401 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   LS+ GY  +T +Q A L   L+  DVL  A+TGSGKT  FGL L   L  E
Sbjct: 11  NLKPALLSNLSDLGYNTMTPIQAAALPAILQGSDVLGKAKTGSGKTATFGLGLLQRLEVE 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R        AL + PTRELA QV  EL  L      + +    GG +   +   L++G
Sbjct: 71  RFRV------QALVLCPTRELADQVAAELRKLARSIHNIKILTLCGGAAFGPQVGSLEHG 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+R   L +  L+ +VLDEAD MLD+GF + ++ ILD +PK+R+ L+
Sbjct: 125 AHIIVGTPGRVHDHLRKGNLQLGDLQTLVLDEADRMLDMGFAETLDAILDLAPKQRQTLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   AI ++AK  Q +   +          DI+     V L +R   +  +L+ +  
Sbjct: 185 FSATYPEAIESMAKRVQHNPQVI-EVEAVHSDHDIEQMFYKVPLENRTQVLGLLLQKYLP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+         L +  F  VAL G++ Q++R   L +  +  A V +ATDVA
Sbjct: 244 ESCMVFCNTKRETQDVADALLQQGFSAVALHGDMIQKDRDRTLVLFANQSASVMVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +++LV++ +LS +PE  +HR GRTGRAG++G +V ++ +N + + E +  +++
Sbjct: 304 ARGLDIAEVDLVVNYQLSRDPEVHVHRIGRTGRAGKRGRAVSMLNENEKFKVELICADSD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            S   +  P          Q   +       I+G +K+ V 
Sbjct: 364 ASPELKNPPV------NRLQTPQKAEFVTLEIEGGKKQKVR 398



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 32/103 (31%)

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            +    E   V L+        + +   V               +  G KQK     ++ 
Sbjct: 345 SMLNENEKFKVELICADSDASPELKNPPVNRLQTPQKAEFVTLEIEGGKKQKVRPGDIVG 404

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
            L    G++ +++G I   P  +FV V           ++  K
Sbjct: 405 ALTGDGGLSVKTLGKIHCFPFHSFVAVKRSHAREALEKIQTGK 447


>gi|325970668|ref|YP_004246859.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324025906|gb|ADY12665.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 546

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/402 (27%), Positives = 201/402 (50%), Gaps = 8/402 (1%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  + + + + +   G+ + T VQE +L   L  +DV+  ++TGSGKT  + L + 
Sbjct: 1   MKFIELPLSEQVLKGIEAAGFTDCTEVQEKVLPISLSHRDVMAQSKTGSGKTAVYVLTIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRER 118
            + +   ++    S P AL +APTRELAVQ+  + L+       V V    GGV   ++ 
Sbjct: 61  QSFVEAQNQGK--SKPKALIVAPTRELAVQIEEDTLKLASGMDDVSVGCFFGGVGYGKQD 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-- 176
             L+ G  I V TPGR+ D+ +   ++       ++DEAD + D+GF  DI+ +      
Sbjct: 119 EILEKGCDIFVCTPGRILDYQKMHKIDFRQFDIFIVDEADRLFDMGFYPDIQKMFSLLRA 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R+ ++FSAT+   +  LA ++  + V + +  E      I      ++   +    +
Sbjct: 179 CTDRQTMLFSATLGTKVRNLAWSFMNEPVELEVQPEEITVKAITQELFHISKDQKFGLFL 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +++    +N ++F +T+A      K L+ + +    L G+L Q +R   ++ M+DG+ +
Sbjct: 239 KLMKKENPENCLIFTNTKARCIEVAKRLSLNGYPTKYLMGDLPQTKRLQTIERMKDGKIK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVAARG+ + DL+LV++ ++  + E+ +HR GRT RAG+ G S+ +  +      
Sbjct: 299 FLVATDVAARGLQIDDLQLVVNYDIPDDFESYVHRIGRTARAGKSGKSITLADEEYVFNL 358

Query: 357 ERLFR--EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           E +    +  + V+W     +  + +  A    +D +  D  
Sbjct: 359 EPIENYIQMKIPVIWPEEGELPEVVDASASYSFRDLVSNDEY 400


>gi|148826462|ref|YP_001291215.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae PittEE]
 gi|189040030|sp|A5UDI1|RHLB_HAEIE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|148716622|gb|ABQ98832.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
          Length = 415

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 195/387 (50%), Gaps = 11/387 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ + L+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    LL  
Sbjct: 15  SLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHHLLTH 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL +A TRELAVQ+  + E+L    G+  A+  GG    ++ + ++ G 
Sbjct: 75  QDPNLEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQAIERGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKKRRML 183
            I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ R  +
Sbjct: 135 DILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPTPQVRLTM 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++    
Sbjct: 195 LFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLMEDEW 254

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +ATDV
Sbjct: 255 PERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILVATDV 314

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +    
Sbjct: 315 AARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAIEEYI 374

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+          + + + + +L+ P
Sbjct: 375 GHSIP---------VSQYETEALLELP 392


>gi|291237232|ref|XP_002738539.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18-like
           [Saccoglossus kowalevskii]
          Length = 634

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/470 (24%), Positives = 214/470 (45%), Gaps = 14/470 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + + ++  + + + G+ ++T +Q   +   L  +D+L +AQTGSGKT+AF +     L  
Sbjct: 146 DRVSELTLKGIVDMGFTHMTEIQSKSIPHLLEGRDLLAAAQTGSGKTLAFLIPCIELL-- 203

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + I+PTREL++Q    L  +         + +GG +   E + L  G
Sbjct: 204 HKLKFMPRNGTGVIIISPTRELSMQTYGVLREVLKYHYHTFGLIMGGANRAEESKKLGKG 263

Query: 125 AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH          +L+ +V+DEAD +L++GF ++++ I+   PK+R+ +
Sbjct: 264 VNIVVATPGRLLDHLQNSPQFMYKNLQCLVIDEADRILEVGFEEEMKQIMKLLPKRRQTM 323

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILR 240
           +FSAT +  I  LA+   K         + ++ + +   +   V+     R   +   L+
Sbjct: 324 LFSATQTKKIENLARLSLKTQPVYVGVDDTKEKATVEGLEQGYVVCTSEKRFLLLFTFLK 383

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+++ G   Q +R+       +    + + 
Sbjct: 384 KNRRKKVMVFFSSCMSVKYHCELLNYIDLPVMSIHGRQKQTKRTQTFFQFCNASEGILLC 443

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT R   GR G ++ ++         R
Sbjct: 444 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGFL-R 501

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
             + A V +        + A  +   +R+++   FL     +  K        H  + I 
Sbjct: 502 YLKNAKVPLSEFEFSWNKIANIQSQLERLIEKNYFLHKSSQEAYKSYVRAYDSHSLKHIF 561

Query: 418 -AGFLRIHRAGLCAPEEITPVSLVS--GRDRFRDDSRAFKVGGGSRDNFK 464
               L + +A      ++ P    S     + +   R     G +  N K
Sbjct: 562 DVNTLDLQKAAQSFGFKVPPSVDFSIHASKKVQKSRRGAPPPGAAIHNRK 611


>gi|238783457|ref|ZP_04627480.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
 gi|238715702|gb|EEQ07691.1| ATP-independent RNA helicase dbpA [Yersinia bercovieri ATCC 43970]
          Length = 511

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 62  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 121

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 122 ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 176 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++   
Sbjct: 236 SATYPAGIEQISARV-QRQPVNVEVDDGDEAPAIEQLFFETTREKRLPLLISVLSHYQPA 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 295 SAVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 355 RGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQI 414

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  +     R A  +L+  +    I G  K  + 
Sbjct: 415 KLKWTPADQL----SRSANTMLEPEMVTLCIDGGRKAKIR 450



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 433 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 492

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 493 QQLQQGK 499


>gi|320582894|gb|EFW97111.1| pre-mRNA processing RNA-helicase, putative [Pichia angusta DL-1]
          Length = 752

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 112/388 (28%), Positives = 191/388 (49%), Gaps = 11/388 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL   G+   T +Q   L   +   D++  A+TGSGKT+AF L L   LLA  
Sbjct: 197 LPLSLRSALDSLGFEAPTPIQCEALPNVMSGHDLIGIAKTGSGKTLAFLLPLFRQLLANP 256

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A +  AL + PTRELA+Q+  E         +    C GG S+ ++  +++ G  
Sbjct: 257 A----APSVRALVMTPTRELAMQIFNESSVFLEALKLRGCCCYGGQSISQQIAEIKKGCD 312

Query: 127 IVVGTPGRLCDHIRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VVGTPGR+ D +      +   SH+  +VLDEAD M D+GF   +  IL  +   R+ +
Sbjct: 313 LVVGTPGRIIDLLCANNGRVLRLSHVTYLVLDEADRMFDMGFEPQVMKILKVTRPDRQTV 372

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---ILR 240
           +FSAT  P +  LA+    D V V + ++N  +  I  +  ++    +   ++      +
Sbjct: 373 LFSATFPPRMEALARRCLTDPVEVLVGAKNLVNDKIMQQFEILDEEQKFGRLLQVLARFQ 432

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              +   ++F   + S       L    +  ++L G   Q +R   +   +     + +A
Sbjct: 433 SSDSGKILIFVDKQDSCDSLANQLIIRGYPTLSLHGGKEQIDRDGIISDFKSNVIDILVA 492

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T VA+RG+D+ DL LV++ +  ++ E+ +HR GRTGRAGR G +V  + ++ +R A  + 
Sbjct: 493 TSVASRGLDVKDLNLVVNYDSPNHMEDYVHRVGRTGRAGRSGTAVTFVTRHQERSASDIV 552

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQ 388
           R   +S    PA  +  I  R  +++ +
Sbjct: 553 RLLELSGTQPPA-ELAQIASRFREKLKR 579


>gi|331214536|ref|XP_003319949.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
 gi|309298939|gb|EFP75530.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Puccinia
            graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1329

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/392 (27%), Positives = 187/392 (47%), Gaps = 15/392 (3%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            +     E +   GY + T +Q   +   +  +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 657  LHAACLEVVKSLGYQSPTPIQGQAVPAIMSGRDVIGVAKTGSGKTLAFLLPMFRHIKDQR 716

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                    P+A+ + PTRELA Q+ +E        G+  A   GG  +     D++ GA 
Sbjct: 717  P-LDALEGPIAMIMTPTRELATQIYKEGRPFLKSLGLRAACAYGGSPLKDNIADMKRGAE 775

Query: 127  IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            ++V TPGR+ +      G+ +N+  +  +VLDEAD M D+GF   +  I++     R+ +
Sbjct: 776  VIVCTPGRMIELLTTNSGRVINMRRVTYLVLDEADRMFDMGFEPQVMKIVNQIRPDRQTV 835

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----L 239
            +FSAT    +  LA+   +  + + +   +   S+I+    +   S + N ++ I     
Sbjct: 836  LFSATFPKQMEALARKILRRPLEITVGGRSVVASEIEQIVEVRQDSTKFNRLLEILGRSY 895

Query: 240  RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++VF   + S     + L +  +  ++L G   Q +R   +   + G   + I
Sbjct: 896  NEDSESRSLVFVDRQESADNLFRDLLKKGYPCLSLHGGKEQVDRDQVIADFKSGVTPIVI 955

Query: 300  ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            AT VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG KG  +  I  + +R A  L
Sbjct: 956  ATSVAARGLDVKQLKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFIAPDQERYAVDL 1015

Query: 360  FREANVSVVWEPAP-------SVEAIRERDAQ 384
             R    S    P          +E I+   AQ
Sbjct: 1016 LRALVTSGAKYPEELKTMSDSFLEKIKSGKAQ 1047


>gi|115398049|ref|XP_001214616.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
 gi|121737954|sp|Q0CLJ6|DED1_ASPTN RecName: Full=ATP-dependent RNA helicase ded1
 gi|114192807|gb|EAU34507.1| ATP-dependent RNA helicase ded1 [Aspergillus terreus NIH2624]
          Length = 674

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 117/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   ++   Y+  T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 188 FTNPPLDDHLISNIALARYLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 247

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                   +PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 248 AFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 307

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF   
Sbjct: 308 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQ 367

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 368 IRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 427

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 428 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRER 487

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAA G+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 488 ERALEMFRSGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 547

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 548 ATAFFNRGNRGVVRDLIDLLKEAHQEVP 575


>gi|124506471|ref|XP_001351833.1| RNA helicase-1 [Plasmodium falciparum 3D7]
 gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium falciparum 3D7]
          Length = 665

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 111/383 (28%), Positives = 189/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L ++     T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 216 IKNFKDMKFPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPL 275

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L    R        P+ L I P+RELA Q    +++                  IG
Sbjct: 276 IMKCLEAEIRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIG 335

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+S + + R++Q G H++V TPGRL D +  K + +   + +  DEAD ++DLGF +++ 
Sbjct: 336 GISAYEQGREIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVR 395

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD    +R+ L+FSAT+   I   AK+   + + +N+      + D+      V    
Sbjct: 396 NTLDHFSNQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEF 455

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++ +L+  G    ++FC  +  V    + L       VA+ G L Q ER  A+ + 
Sbjct: 456 KLSYLLEVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLF 514

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G+  + + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++   I +
Sbjct: 515 REGKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINK 574

Query: 351 NMQR----RAERLFREANVSVVW 369
           N +       + L  EA   +  
Sbjct: 575 NQEEAILLDLKALLIEAKQKIPP 597


>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
 gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
          Length = 399

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 185/376 (49%), Gaps = 12/376 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   +   +   G+   +S+Q   +   +  KDV+  AQ+G+GKT  F + +  
Sbjct: 24  TFEAMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERR 119
            L  +           AL ++PTRELA Q  + +  L     V   A+  G       +R
Sbjct: 84  VLELKRKD------LQALVLSPTRELASQSCQVVSNLGDYLNVKAFALTGGKALKDDLKR 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSP 177
              +G H+V GTPGR+ D I+ + +   +++ +VLDEADE+L     F+  I  I    P
Sbjct: 138 IQSSGCHVVSGTPGRVLDLIKRQVVQTRNVQVLVLDEADELLSETLGFKQQIYDIFARLP 197

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIV 236
              ++++ SAT+S  I  + K +  D V++ +  +      I      +     + + + 
Sbjct: 198 PGCQVVVVSATMSRDILEVTKKFMSDPVKILVKRDEISLEGISQYYVDVSKEEWKFDTLC 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++         ++FC+TR  V   +K L +  F VV++ G++ Q++R   +   R G +R
Sbjct: 258 DLYDSLTITQCVIFCNTRKKVDWLSKKLIQSNFAVVSMHGDMKQEDRDKVMNDFRTGHSR 317

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I+TDV ARGID+  + LVI+ ++    EN +HR GR+GR GRKG++V  I +    + 
Sbjct: 318 VLISTDVWARGIDVQQISLVINYDMPEIMENYIHRIGRSGRFGRKGVAVNFITREDSSKL 377

Query: 357 ERLFREANVSVVWEPA 372
           +   +   + +   PA
Sbjct: 378 KATEKMYGIKIKPMPA 393


>gi|238791786|ref|ZP_04635423.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
 gi|238728890|gb|EEQ20407.1| ATP-independent RNA helicase dbpA [Yersinia intermedia ATCC 29909]
          Length = 460

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPTEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+  +      +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPVGIERISARVQRQPI-NVEVDDGDEVPAIEQVFFETTREKRLPLLISVLSHYQPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL LV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMSRAHAIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEPV----SRSANAMLEPEMVTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|168011049|ref|XP_001758216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690672|gb|EDQ77038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 414

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 188/373 (50%), Gaps = 10/373 (2%)

Query: 3   IFE--NIPQVIGEALSERG-YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F+   + + +   +   G +   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  TFDVMGLHENLLRGIYAYGSFEKPSAIQQRGIVPFTKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL +APTRELA Q+ + +  L     V V  C+GG SV  ++R
Sbjct: 101 QQLDYQ------LLECQALVLAPTRELAQQIEKVMRALGDYLQVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G H+VVGTPGR+ D +R   L    +K  VLDEADEML  GF+D I  I    P+K
Sbjct: 155 ILQAGVHVVVGTPGRVYDMLRRNALRADSIKCFVLDEADEMLSRGFKDQIYDIFQLLPQK 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++ +FSAT+ P    + + +    V++ +  +      I      +     + + + ++
Sbjct: 215 LQVGVFSATMPPEALEITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDL 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV 
Sbjct: 275 YETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 334

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++  R  + 
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQD 394

Query: 359 LFREANVSVVWEP 371
           + +  N  +   P
Sbjct: 395 IQKFYNTVIEELP 407


>gi|110835269|ref|YP_694128.1| DEAD-box ATP dependent DNA helicase [Alcanivorax borkumensis SK2]
 gi|110648380|emb|CAL17856.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
           borkumensis SK2]
          Length = 450

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 186/383 (48%), Gaps = 10/383 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + + +AL E      T VQ A +   L  +D+ V A+TGSGKT AF L +
Sbjct: 1   MSSFADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +    P +   AL + PTRELA Q  +++E L   T +   +  GG     + 
Sbjct: 61  LHQLLQYSR---PRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQA 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++    I++GTPGRL +H+    L +  L+ +VLDE+D MLD+GF DD+  +      
Sbjct: 118 AKMRKNPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT          +      R  +    R    S          +  ++  + 
Sbjct: 178 ERQTLLFSATTGGNAMENMISSVLRDPRSLVLDSVRDLNESVSQQIITADDVKHKERLVQ 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +TR    R   VL     +V  L GE  Q++R  A+  ++ G  +
Sbjct: 238 WLLANETYDKAVVFTNTREQADRLCGVLVASNLKVFVLHGEKDQKDRKLAMDRLKTGAVK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGI + +L+LVI+ ++  + +  +HR GRTGR G +G ++ +I  +     
Sbjct: 298 VLVATDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLM 357

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
             + R    +  +     VEA+R
Sbjct: 358 ASIQRYLRQNFEYR---LVEALR 377


>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
 gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
           tannerae ATCC 51259]
          Length = 484

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 9/377 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     + +AL +  +   T VQ   + P L  +DV+  AQTG+GKT A+      
Sbjct: 8   FFEDLALSDDVLDALYDMRFEKCTPVQARCIPPILEGRDVIGIAQTGTGKTAAYL---LP 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHRE 117
            L        P  A   L +APTRELA Q+ + L+       V      GG       +E
Sbjct: 65  LLTLLKQESHPTDAVNCLVMAPTRELAQQIDQALQGFGYYVDVNGVAVYGGNDGVRYEQE 124

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R+ L+ GA IV+ TPGRL  H+     ++S    +VLDEAD MLD+GF DDI  I+   P
Sbjct: 125 RKSLKRGADIVIATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLP 184

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++R+ ++FSAT+   I  LA +           + ++   +I     +   +D+   I +
Sbjct: 185 EQRQTILFSATMPAKIRELA-HKIMHNPEEVSIAISKPAENIRQSLFICKENDKTAIIKH 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  I+FC ++  V      L    + V A+  +L Q++R   +   + GR  +
Sbjct: 244 LFADQKPERVIIFCGSKQKVKELNITLKRKGYNVEAMHSDLEQKQRDEVMLGFKAGRIDI 303

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+ ARGID+ D+ LVI+ ++  + E+ +HR GRT RAGR G +V ++ +  +    
Sbjct: 304 LVATDIVARGIDIDDITLVINYDVPRDAEDYVHRIGRTARAGRNGRAVTLVGEKDRYALR 363

Query: 358 RLFREANVSVVWEPAPS 374
            + +  +  +  E  P 
Sbjct: 364 NIEQLLDKELPREVLPE 380


>gi|238919400|ref|YP_002932915.1| ATP-dependent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
 gi|238868969|gb|ACR68680.1| ATP-independent RNA helicase DbpA [Edwardsiella ictaluri 93-146]
          Length = 457

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 209/409 (51%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P+     L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFAELNALPEEQLNNLNELGYQTMTPVQAATLPAILAGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV   L  L      +  + + G      
Sbjct: 61  LLQHID------ASRFITQSLVLCPTRELADQVAAALRRLARYMPNIKVLTLCGGVPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HI+V TPGRL DH++ + L++  L+ ++LDEAD MLD+GF D ++ ++  +
Sbjct: 115 QRDSLIHAPHIIVATPGRLLDHLKKETLSLEALQTLILDEADRMLDMGFADALDEVISWA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+KR+ L+FSAT    I  +++  Q+D + +     + +   ++ R   V+ S +   + 
Sbjct: 175 PEKRQTLLFSATWPAEIAAISRRIQRDPLTI-EIDTDGELPAVEQRFYEVSRSGKTGLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E    V+ L G++ Q++R   L    +G +R
Sbjct: 234 ALLSQHQPASCVVFCNTKKDCQAVYDALEESGQSVLVLHGDMEQRDRDQTLVRFANGSSR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +VI+ ELS +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKALAMVINYELSWDPEVHVHRIGRTARAGASGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     V + W+P P    I        L+  +    I G +K  + 
Sbjct: 354 NALEEMLGVRLQWQPQPDGVRI------AALEAAMATLCIDGGKKAKMR 396



 Score = 65.0 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 68/202 (33%), Gaps = 15/202 (7%)

Query: 341 KGMSVFVIPQNMQRRAER--LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
            G SV V+  +M++R     L R AN S     A  V A R  D + +      + + + 
Sbjct: 264 SGQSVLVLHGDMEQRDRDQTLVRFANGSSRVLVATDVAA-RGLDIKAL----AMVINYEL 318

Query: 399 DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                V V          A+G        LCAPEE    + +      R   +    G  
Sbjct: 319 SWDPEVHVHRIGRTARAGASGLAI----SLCAPEEAQRANALEEMLGVRLQWQPQPDGVR 374

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                   +   +  G K K     ++  L    G+    IG I + P   +V V     
Sbjct: 375 IAALEAAMATLCIDGGKKAKMRPGDILGALTGELGLEGADIGKIDIHPTHAYVAVRRAVA 434

Query: 519 ----DLLRRTVKLDKGIQLKYL 536
                 L++     K ++++ L
Sbjct: 435 RQAWKQLQQGKIKGKAVKVRLL 456


>gi|319425286|gb|ADV53360.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 419

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 9/385 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+      + E+L   G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFHLDPSLLESLKAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPTLQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RFS  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRFSGQA--RILILTPTRELASQIHRYACHLATDQGLDIAIITGGVPYAPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 AGNVDILVATPGRLMEYLDKGKFSAEEVDILIIDEADRMLDMGFSSVVQAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+                        R      ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLKDPIEIDVDAPRSEKAKIHQWIHLADDKEHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  TR  V+     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 RQEDVKRTIVFVKTRDIVTSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRV---IEELRPKNKE 382


>gi|118404346|ref|NP_001072473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Xenopus (Silurana)
           tropicalis]
 gi|112419339|gb|AAI21889.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Xenopus (Silurana)
           tropicalis]
          Length = 666

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 176/370 (47%), Gaps = 7/370 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+ +  AL + G+   T +Q       L+  D++  AQTG+GKT+A+ L     L 
Sbjct: 265 FHPFPE-VMSALEKSGFERPTPIQSQAWPVILQGIDLIGIAQTGTGKTLAYLLPGFIHLD 323

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L +APTRELA+QV  E    Y   G       GG   + +   +  
Sbjct: 324 LQPIPREQQDGPGMLVLAPTRELALQVKAECSK-YKYKGFESICIYGGGDRNNQINKVTK 382

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D      +N+  +  +VLDEAD MLD+GF   I  IL      R  +
Sbjct: 383 GVDIVIATPGRLNDLQMNNFVNLKSITYLVLDEADRMLDMGFEPQIMKILIDIRPDRHTI 442

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LAK+Y KD + V + + +    + +    +++   ++   +++ +   
Sbjct: 443 MTSATWPDGVRRLAKSYLKDPMMVYVGTLDLAAVNTVTQHVLVIPEEEKRAFVLHFIDSL 502

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             ++  IVF   +      +   +     V +L G   Q +R  AL   + G+ R+ +AT
Sbjct: 503 KPQDKVIVFVGKKLVADDLSSDFSLQGIPVQSLHGNREQCDREQALDDFKKGKVRILVAT 562

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAER 358
           D+A+RG+D+ D+  V++ +   N E  +HR GRTGRAGR G S+ ++ +   +       
Sbjct: 563 DLASRGLDVHDVTHVLNFDFPRNIEEYVHRVGRTGRAGRTGESITLVTRKDWKVAGELIS 622

Query: 359 LFREANVSVV 368
           +   AN  V 
Sbjct: 623 ILERANQEVP 632


>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 544

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 197/397 (49%), Gaps = 23/397 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSAEVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 103 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 162

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF D
Sbjct: 163 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFID 222

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DI+ I+  +P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I        
Sbjct: 223 DIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNISQTVHYVD 282

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 283 DRDHKDRLLDHLLRADGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 342

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 343 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 402

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           ++    Q   +R+ R     +   P   VE    R A
Sbjct: 403 LVHHAEQGALKRIERFVRTPL---PVNVVEGFEPRKA 436


>gi|256053074|ref|XP_002570034.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227287389|emb|CAY17652.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 527

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 121/481 (25%), Positives = 230/481 (47%), Gaps = 17/481 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + I  A+ E G+ ++T +Q   +   L  +D++  A+TGSGKT+AF + +   
Sbjct: 52  FEDLPISEPIKRAVKEMGFTHMTDIQGKCIPQLLEHRDLMACAKTGSGKTLAFLIPVVEL 111

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L  N    P +   A+ I+PTREL++Q    L  L   T + + + +GG +   E ++L
Sbjct: 112 ML--NLGLQPRNGTGAIIISPTRELSLQTYGVLGELIQFTNLRIGLIMGGSNRQTEAQNL 169

Query: 122 QNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G  I+V TPGRL DH    K     +LKA+V+DEAD +LD+GF  ++  I+   P  R
Sbjct: 170 EKGVTILVATPGRLLDHLSNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVR 229

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT++     LA         +  +          ++   V+     R   +   
Sbjct: 230 QTMLFSATLNEKTKNLANAALKASCVMVGSAPDTEATVEGLEQGYVVCPPDRRFCLLYTF 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ + +K  +VF ++   V  + ++L      V+A+ G   Q +R++         + V 
Sbjct: 290 LKKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFVKAESAVL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDV ARG+D+P ++ ++  +   + +  +HR GRT RAG  G ++ V+  +       
Sbjct: 350 LCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFL-S 408

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFL-----DSIQGDEKKMVDVLLAKHD 412
           + R+A V VV     + + A  +   ++++++  FL     ++ +G  +      L+  +
Sbjct: 409 ILRKARVKVVEYEIANSKMADVQPALEKLIKNNYFLALSAQEAFKGIVRAYASSGLSCFN 468

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF-SL 471
            +++              P+    +++ S R R     + +K  G S    K +  +  +
Sbjct: 469 VDELDLAATAKTCGLTITPK--VDLNVKSKRTRENPGQKRYKPFGVSDKKAKKAKIYKRI 526

Query: 472 S 472
           S
Sbjct: 527 S 527


>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
 gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
          Length = 800

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L    
Sbjct: 239 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 298

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRER 118
            +  +         P+AL +APTRELA Q+   +                 GG S   + 
Sbjct: 299 HIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 357

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 358 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 417

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V 
Sbjct: 418 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQRLVC 477

Query: 238 ILRYHGA--------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +L                IVF  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 478 LLNEISPIKNSGSNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDSVLKD 537

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 538 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 597

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 598 PDNAKQARELISVLEEAGQT 617


>gi|226949308|ref|YP_002804399.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844168|gb|ACO86834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
          Length = 376

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 187/371 (50%), Gaps = 6/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L ++  +  T +QE  +       DV+  AQTG+GKT+AF L +   +  + 
Sbjct: 9   LSDSIIDVLKKQRIIEPTPIQEESIMFIKNGNDVIAEAQTGTGKTLAFLLPMFENISPD- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +A   L I PTRELA+Q+  E   L     + +    GG  +  + + L+N  H
Sbjct: 68  -----INAIQGLIITPTRELAIQITEEAMKLKEAKDLNILAAYGGKDIGSQIKKLKNNIH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL DH+    LN   LK +VLDEADEML +GF++D+  I++++P+KR+ L FS
Sbjct: 123 LVIATPGRLLDHLNRNTLNFKDLKTLVLDEADEMLLMGFKNDVRSIIENTPRKRQTLCFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  LA    +D   + I  E     +I    +      +   +  IL       
Sbjct: 183 ATMNSEVKKLAYKNMRDPRLIIIEKEEVTLKNIKQVLIETTDRRKQEDLCKILDEENPFM 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + L +  +    L G ++Q +R   ++  ++   +  IATDVAAR
Sbjct: 243 AIIFCRTKRRVDTLEEALYKKGYNCEKLHGSITQPKRERIMRSFKNLEIQYLIATDVAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V + ++  N E+ +HR GRTGRAG KG +   +    ++    + RE    
Sbjct: 303 GLDITGVTHVFNYDIPENAESYIHRIGRTGRAGEKGYTFLFVAPKDEQTLSIIEREIKFK 362

Query: 367 VVWEPAPSVEA 377
           +  +   + + 
Sbjct: 363 ISRKTLTNSKE 373


>gi|18407327|ref|NP_566099.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75318047|sp|O22907|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
 gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
          Length = 760

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 189/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      I  A+ ++ Y   T++Q   L   L  +DV+  A+TGSGKT AF L +
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S H + 
Sbjct: 287 IVHIM-DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQF 345

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   +  I+     
Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRP 405

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 406 DRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLE 465

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF S +A+V      L  + F+V AL G+  Q  R   LQ  + G   
Sbjct: 466 KLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHH 525

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V IATDVAARG+D+  L+ V++ +++ + +  +HR GRTGRAG R G++  ++ Q   R 
Sbjct: 526 VLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARF 585

Query: 356 AERLFR---EANVSVVWE 370
           A  L      A  +V  E
Sbjct: 586 AGELVNSLVAAGQNVPPE 603


>gi|15603786|ref|NP_246860.1| ATP-dependent RNA helicase RhlB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|32363392|sp|Q9CJS1|RHLB_PASMU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12722355|gb|AAK04005.1| RhlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 423

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 186/369 (50%), Gaps = 5/369 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +  AL E+G+   T +Q   L   L  KDV   AQTG+GKT+AF  A    
Sbjct: 11  FSDLPLHHQVLAALQEKGFDYCTPIQALSLPMSLAGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL +         P AL +APTRELAVQ+  +   L   TG+   +  GG    ++ + +
Sbjct: 71  LLTQQGD-KGGRQPRALILAPTRELAVQINNDAALLTKATGLKTGLAYGGDGYEKQLKAI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 130 EQGVDILIGTTGRVIDYVKQGIVRLDKIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPQH 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   V I    +    I       +  D+   ++ +L
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R + L+   +G   + +
Sbjct: 250 EEEWPERCIIFANTKHRCEDIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTEGHLDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 310 ATDVAARGLHISDVSHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 369

Query: 360 FREANVSVV 368
               + S+ 
Sbjct: 370 EEYISHSIP 378


>gi|19075533|ref|NP_588033.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe 972h-]
 gi|21542025|sp|O13370|DED1_SCHPO RecName: Full=ATP-dependent RNA helicase ded1; AltName:
           Full=Multicopy suppressor of overexpressed cyr1 protein
           2
 gi|2558968|gb|AAC04893.1| suppressor of uncontrolled mitosis [Schizosaccharomyces pombe]
 gi|3080516|emb|CAA18646.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces pombe]
 gi|3514095|gb|AAC34121.1| putative DEAD box RNA helicase Dep1 [Schizosaccharomyces pombe]
 gi|4582232|emb|CAB40192.1| putative RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 20/380 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   GY   T VQ+  +      +D++  AQTGSGKT  F   + S    + 
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235

Query: 67  DRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               P               P  L +APTREL  Q+  E      ++ V      GG  +
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADI 295

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-- 172
             + R +  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I  
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355

Query: 173 --LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
               +S ++R+ LMFSAT    I  LA+++ KD V +++        +I  + V V  S+
Sbjct: 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE 415

Query: 231 RDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           + + +++IL     +   ++F  T+      T  L    F   ++ G+ +Q+ER  AL++
Sbjct: 416 KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALEL 475

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R GR  + +AT VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G +V    
Sbjct: 476 FRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535

Query: 350 QNMQ---RRAERLFREANVS 366
           +N +   +    L +EAN  
Sbjct: 536 RNNKGIAKELIELLQEANQE 555


>gi|2992158|dbj|BAA25324.1| Moc2 RNA helicase [Schizosaccharomyces pombe]
          Length = 636

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 20/380 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   GY   T VQ+  +      +D++  AQTGSGKT  F   + S    + 
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235

Query: 67  DRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               P               P  L +APTREL  Q+  E      ++ V      GG  +
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADI 295

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-- 172
             + R +  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  I  
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355

Query: 173 --LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
               +S ++R+ LMFSAT    I  LA+++ KD V +++        +I  + V V  S+
Sbjct: 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSE 415

Query: 231 RDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           + + +++IL     +   ++F  T+      T  L    F   ++ G+ +Q+ER  AL++
Sbjct: 416 KRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALEL 475

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R GR  + +AT VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G +V    
Sbjct: 476 FRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535

Query: 350 QNMQ---RRAERLFREANVS 366
           +N +   +    L +EAN  
Sbjct: 536 RNNKGIAKELIELLQEANQE 555


>gi|324502886|gb|ADY41264.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 784

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 201/462 (43%), Gaps = 6/462 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L +  Y   T++Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +     
Sbjct: 135 ILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIM-DQPELE 193

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ ++PTRELA+Q  +E         + VA   GGV +  +  DL+ GA ++V 
Sbjct: 194 ELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLKRGAEVIVC 253

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           T GRL D     +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSA
Sbjct: 254 TVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSA 313

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T    +  LA+      V + +  ++    D+    V++    +   ++ +   Y    N
Sbjct: 314 TFPRQMEALARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGN 373

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +         L    +    L G + Q +R + +   +  + ++ +AT VAAR
Sbjct: 374 VLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAAR 433

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANV 365
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I P   +R A  + R    
Sbjct: 434 GLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQERMAGEVCRAFET 493

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           +    P    +   +  AQ   +         G          A+ + E       R+  
Sbjct: 494 ASKEPPEQLKKIWEDYKAQMAAEGKTVHMGGCGFSGSGYKYDQAEDEKEATRRKVTRLVH 553

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               A ++     +           R    G G   N   ++
Sbjct: 554 GMESAMDDDDDDEIEQQLSSMMKGKRRVIEGHGPSTNAPNAT 595


>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
 gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
           otae CBS 113480]
          Length = 1183

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/400 (26%), Positives = 187/400 (46%), Gaps = 21/400 (5%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + GY   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 562 LDVIRKLGYEGPTSIQSQAVPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRP-LEN 620

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P++L + PTRELA Q+ RE         +      GG  +  +  +L+ GA I+V T
Sbjct: 621 MEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 680

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +    R+ ++FSAT
Sbjct: 681 PGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSAT 740

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +     +          +     +
Sbjct: 741 FPRNMEALARKTLSKPVEIIVGGRSVVAPEITQIVEVRNDDAKFVRLLELLGNLYSDDEN 800

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF   + +  R  + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 801 EDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQIDRDSTIDDFKAGIFPILIATS 860

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + ++ +R +  + + 
Sbjct: 861 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYSVDISKA 920

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              S    P P          Q+++    FLD ++  ++K
Sbjct: 921 LKQSGQPVPEP---------IQKMV--TAFLDKVKEGKEK 949


>gi|550331|emb|CAA57418.1| putative RNA helicase [Dictyostelium discoideum]
          Length = 566

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 181/402 (45%), Gaps = 29/402 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+P+ I EA+ + GY   + +Q   +   L  +D+L  A+TGSGKT AF + +   +  
Sbjct: 150 SNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISK 209

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    + + A  P AL +APTREL  Q+ +E        G  V   +GG S+  +   + 
Sbjct: 210 QPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVS 269

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------------- 169
            G  I++ TPGRL D +  + L ++    +VLDEAD M+DLGF   +             
Sbjct: 270 KGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLK 329

Query: 170 --------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                   +   D S   R  ++FSAT+ P +  L+K Y +    + I    +    I  
Sbjct: 330 SEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQ 389

Query: 222 RAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V   + +   +  +++       I+F + +        VL E       L    SQ
Sbjct: 390 TVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQ 449

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IAT VA+RGI +  +  VI+ ++  N E+  HR GRTGRAG 
Sbjct: 450 EQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 509

Query: 341 KGMSVFVIPQ---NMQRRAERLFREAN--VSVVWEPAPSVEA 377
            G++   I      +    +++    N  V +     PS + 
Sbjct: 510 AGLASSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQQ 551


>gi|326571018|gb|EGE21042.1| ATP-dependent RNA helicase RhlB [Moraxella catarrhalis BC7]
          Length = 391

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 189/385 (49%), Gaps = 9/385 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++P  + I +A+    +  LT +Q  IL   L  +D +  AQTG+GKT  F + +
Sbjct: 6   VKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITI 65

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +LL    + D       P AL +APTRELA Q+  +   L   + +      GG    
Sbjct: 66  IESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCHELTRFSQLYNLCITGGSDFD 125

Query: 116 RERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++   L      I++GTPGR+ D +    L +  ++  VLDEAD MLD+GF  DI+ I+ 
Sbjct: 126 KQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVR 185

Query: 175 SSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P         FSAT +  +  LA  +      V IA E++ +  ID +  LV   ++ 
Sbjct: 186 HMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKT 245

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +A+  IL     K  I+F + +  V R    L  H      LSG+++QQ+R   LQ  +D
Sbjct: 246 SALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKV-TMLSGDVAQQKRERYLQRFKD 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVA RGI + D+  VI+  L   P++ +HR GRTGRAG  G+S+  + +N 
Sbjct: 305 GEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSEND 364

Query: 353 QRRAERLFREANVSVVWEPAPSVEA 377
                 L R  +          ++ 
Sbjct: 365 AFNLPALERHIDQKFKLNQFEFLDE 389


>gi|254523078|ref|ZP_05135133.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
 gi|219720669|gb|EED39194.1| ATP-independent RNA helicase DbpA [Stenotrophomonas sp. SKA14]
          Length = 458

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 128/377 (33%), Positives = 197/377 (52%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   L   GY  LT VQ   L   L  +DV+  A TGSGKT AFGL L
Sbjct: 1   MTDFSTLPLSPALQPGLDALGYTTLTPVQAQSLPAILDGRDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     R        AL + PTRELA QVG+++  L      +  + + G      +
Sbjct: 61  LQAIDPSLIRV------QALVLCPTRELADQVGKQIRKLATGIPNLKLLLLVGGVPLGPQ 114

Query: 119 --RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + LN+  ++ +VLDEAD MLD+GF + I  I   +
Sbjct: 115 LASLEGHDPHVVVGTPGRVQELARKRALNLGAVRTLVLDEADRMLDMGFEEPIREIAGRT 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I  +A++  +DAV V       Q   I +    V  + R  A+ 
Sbjct: 175 HKDRQSLLFSATFPDSIRAMARDLLRDAVEV-TVEGADQAPAIRHLFCEVEPAHRQKALA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +  ++A+VFC+TR  V      L +  F  +AL G++ Q++R   L ++ +    
Sbjct: 234 GLLLKYTPESAVVFCNTRKDVDEVANSLQQFGFSALALHGDMEQRDREEVLLLLANRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ +L  VI+ EL ++ E+  HR GRTGRAG  G+++ ++    + RA
Sbjct: 294 VLVASDVAARGLDVEELAAVINYELPTDVESYQHRVGRTGRAGASGLAISLVAGREKSRA 353

Query: 357 ERLFREANVSVVWEPAP 373
           E +  +    + W+  P
Sbjct: 354 EAIEAQMGQPLDWQKTP 370



 Score = 64.2 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 68/184 (36%), Gaps = 29/184 (15%)

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL------------RIH 424
            + +RD + +L   L L +   +     DV     D E++AA               R+ 
Sbjct: 274 DMEQRDREEVL---LLLANRSCNVLVASDVAARGLDVEELAAVINYELPTDVESYQHRVG 330

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG-------------GGSRDNFKGSSWFSL 471
           R G      +  +SLV+GR++ R ++   ++G               +           +
Sbjct: 331 RTGRAGASGLA-ISLVAGREKSRAEAIEAQMGQPLDWQKTPLATSRPAELPQAAMRTLRI 389

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
             G   K     ++  L   +G++ + IG I + P  ++V ++ +  +     ++  K  
Sbjct: 390 DGGKTDKLRPGDILGALTGDAGLSSKFIGKIAIFPTRSYVAIAREQANKAVAKLEAGKIK 449

Query: 532 QLKY 535
             ++
Sbjct: 450 GRRF 453


>gi|198413641|ref|XP_002129468.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           isoform 1 [Ciona intestinalis]
          Length = 449

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/422 (28%), Positives = 213/422 (50%), Gaps = 19/422 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ E   + G+   + +QE  +   L+  DV+  A+TGSGKT AF + +  
Sbjct: 21  TFQSLGVVDVLCETCDKLGWKKPSKIQEEAIPVALQGNDVIGLAETGSGKTGAFCIPVLQ 80

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R        AL + PTRELA Q+  + + L +  G+   V +GGV +  ++  
Sbjct: 81  ALLENPQR------LFALVLTPTRELAFQIEEQFKALGSAIGIKTCVVVGGVDMMGQQII 134

Query: 121 LQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VV TPGRL DH  + KG  +  +K +VLDEAD +L++ F  +++ IL   P++
Sbjct: 135 LAKKPHVVVATPGRLVDHLEKTKGFTLRSIKFLVLDEADRILNMDFESELDTILKVIPRE 194

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT++  +  L +      V+  + ++      +    + +   D+D  +  ++
Sbjct: 195 RRTFLFSATMTGKVKKLQRAALTKPVKCAVNNKYHTVDKLFQYYLFLPSKDKDCYLAAVV 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC T A+  R   +L       V L G++SQ +R  AL   +     + +
Sbjct: 255 NELAGNAMIIFCGTCANTQRTALILRNLGISAVPLHGQMSQAKRLGALNKFKSATKSILV 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ +  ++ +HR GRT RAGR G SV  + Q      +R+
Sbjct: 315 ATDVASRGLDIPHVDVVINMDVPARSKDYIHRVGRTARAGRFGKSVTFVTQYDVELYQRI 374

Query: 360 FREANVSVVWEPAP--SVEAIRER--DAQRILQDPLFL------DSIQGDEKKMVDVLLA 409
                  +         V+ ++ER  +AQR+ +  +         ++  D +++ D  + 
Sbjct: 375 EELIGKKLPEYEMEHNEVKVLQERVAEAQRLARLEMKERGSKKRGAVASDSEELADQNIG 434

Query: 410 KH 411
           KH
Sbjct: 435 KH 436


>gi|45361303|ref|NP_989229.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|38969901|gb|AAH63223.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
 gi|89271852|emb|CAJ81861.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Xenopus (Silurana)
           tropicalis]
          Length = 609

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 184/379 (48%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + E +  + + + T +Q       L   D++  A TGSGKT+++ L     +  +
Sbjct: 98  SFPANLMEVVKRQNFTDPTPIQGQGWPVALSGLDMVGVAMTGSGKTLSYLLPGIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +          +      GG     + RDL+ G 
Sbjct: 158 -PFLQRGDGPILLVLAPTRELAQQVQQVAAEYGRACRLRSTCIYGGAPKGPQIRDLERGV 216

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N++    +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 217 EICIATPGRLIDFLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D V +NI +     + +I     +    ++D  +V ++    +
Sbjct: 277 SATWPKEVRQLAEDFLRDYVHINIGALELSANHNILQIVDVCNDGEKDEKLVRLMEEIMS 336

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ L    +  + + G+ SQQER   L   + G++ + IAT
Sbjct: 337 EKENKTIVFVETKRRCDDLTRRLRRDGWPAMGIHGDKSQQERDWVLNEFKHGKSPILIAT 396

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +         ++   L  
Sbjct: 397 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQVNDLIS 456

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 457 VLREANQAINPKLLQLVED 475


>gi|221053806|ref|XP_002258277.1| eukaryotic initiation factor [Plasmodium knowlesi strain H]
 gi|193808110|emb|CAQ38814.1| eukaryotic initiation factor, putative [Plasmodium knowlesi strain
           H]
          Length = 390

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FENI   + +   +   G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 17  TSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILSGRDVILQSQSGTGKTCVFAVGAL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          S    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 77  NCVNRN------LSETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +    V++ +  +      I      +     +   + ++
Sbjct: 191 TQIVLSSATLPQEVLEITNKFMHRPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + RV 
Sbjct: 251 YESLTITQAVVFCNTKMKVDWLTKKMQEANFTVCKMHAGMSQSERDDIMLKFRQCKFRVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  +    
Sbjct: 311 ISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 370

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 371 IEQYYSTQIDEMPM 384


>gi|3776021|emb|CAA09211.1| RNA helicase [Arabidopsis thaliana]
          Length = 441

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 185/372 (49%), Gaps = 9/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +  
Sbjct: 69  TFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 128

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA Q+ + +  L    GV    C+GG SV  ++R 
Sbjct: 129 QLDIS------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRV 182

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ+G H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K 
Sbjct: 183 LQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKV 242

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 243 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 302

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 303 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 362

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +    +R    +
Sbjct: 363 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 422

Query: 360 FREANVSVVWEP 371
            R  NV V   P
Sbjct: 423 QRFYNVVVEELP 434


>gi|293349333|ref|XP_001060057.2| PREDICTED: rCG25924-like [Rattus norvegicus]
 gi|149019091|gb|EDL77732.1| rCG25924 [Rattus norvegicus]
          Length = 620

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 192/393 (48%), Gaps = 9/393 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F + P+ + E +   G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 221 FHSYPE-VMENIKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 279

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E           V V  GG    +  +D+  
Sbjct: 280 SQP--LEQRNGPGMLVLTPTRELALQVEAECSKYSYGDLKSVCVYGGGDRDGQI-QDVSK 336

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 337 GVDIIIATPGRLNDLQMNNFVNLKSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 396

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++   I   L   
Sbjct: 397 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIITTEEEKRTHIQTFLENM 456

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 457 SPKDKVIVFVSRKAVADHLSSDLILRHISVESLHGNREQSDREKALENFKTGKVRILIAT 516

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR GMS+ +I +N  R A     
Sbjct: 517 DLASRGLDVHDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGMSITLITRNDWRIATELIN 576

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +   AN ++  E     E  +    +R ++  +
Sbjct: 577 ILERANQNIPEELVLMAERYKANKLKREMEKKM 609


>gi|3097266|emb|CAA76677.1| translation initiation factor [Pisum sativum]
          Length = 407

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 186/374 (49%), Gaps = 10/374 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   I + +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +  
Sbjct: 34  TFEGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q  + +  +     +    CIGG SV  + R 
Sbjct: 94  VVD------TSVREVQALIVSPTRELATQTEKVILAIGDHINIQAHACIGGKSVGEDIRK 147

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G H+V GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P   
Sbjct: 148 LEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++ + S T+   I  +   +  D VR+ +  +      I    V +     + + +  I 
Sbjct: 208 QVCLISRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIF 267

Query: 240 RYHGAKNAIVFC-STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++  +T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV 
Sbjct: 268 MILSPSLKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVL 327

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    
Sbjct: 328 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRD 387

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 388 IEQYYSTQIDEMPM 401


>gi|66812114|ref|XP_640236.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
 gi|74897113|sp|Q54S03|DDX18_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx18; AltName:
           Full=DEAD box protein 18
 gi|60468220|gb|EAL66230.1| hypothetical protein DDB_G0282741 [Dictyostelium discoideum AX4]
          Length = 602

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 184/421 (43%), Gaps = 11/421 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P  +   +++ E G+  +T +Q   + P L  KD+L +A+TGSGKT+AF +     
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+  N  F P +    + I+PTRELA+Q+      L         + IGG S   E   L
Sbjct: 181 LVKSN--FKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERL 238

Query: 122 QNGAHIVVGTPGRLCDHIRG----KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + G +++V TPGRL DH++        N+  L     D   E+        I   +  + 
Sbjct: 239 EKGVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTR 298

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +              I  ++ N     V V+   E      ++   V+     R   +  
Sbjct: 299 QTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYT 358

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ + +K  IVF S+  +V    ++L      V+ L G   QQ+R+N      +    +
Sbjct: 359 FLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGI 418

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRA 356
            I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG ++  +        
Sbjct: 419 LICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFL 478

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + L + A V +     P  +    +D  ++++    +L +   D  K      A H  + 
Sbjct: 479 KYL-KLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYICAYASHSLKD 537

Query: 416 I 416
           I
Sbjct: 538 I 538


>gi|297624335|ref|YP_003705769.1| DEAD/DEAH box helicase domain-containing protein [Truepera
           radiovictrix DSM 17093]
 gi|297165515|gb|ADI15226.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
           17093]
          Length = 526

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 221/416 (53%), Gaps = 11/416 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++P    +  AL  +G+   T++Q A L   L   DVL  A+TG+GKT+AFGL +A+
Sbjct: 1   MFHDLPLRASLSRALEAKGFSTPTTIQAATLPHALAGGDVLGLARTGTGKTLAFGLPIAN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E+ R     AP AL + PTRELA+QV  ELEWL  +    V    GG    ++  D
Sbjct: 61  RLEPESAR---GRAPRALILTPTRELALQVAGELEWLAPEHN--VVTVYGGTGYGKQASD 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGR  D+ +   L +S ++  VLDEADEML+ GF +D+E +L ++P++R
Sbjct: 116 LKRGADIVVATPGRAVDYYKQGVLQLSRVEVAVLDEADEMLNAGFEEDVELLLAATPQER 175

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+     +LA  + +D +R N+ S+     D    A+   L+ R   + ++L 
Sbjct: 176 QTLLFSATLPRWAESLAARHLRDPLRANVTSDESVSYDEV--AIEAPLASRLGVLSDVLH 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            HG   +IVF  T+A V    K L        A+ G+L+Q +R   L+  R  +  V +A
Sbjct: 234 VHGTGASIVFTRTKAEVDELAKALTSLGHLAEAVHGDLNQVQRERVLERFRASQVTVLVA 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P+++LV+H      PE   HRSGRTGRAGR G  V +     +R    L 
Sbjct: 294 TDVAARGLDIPEVDLVVHYRFPEQPERYQHRSGRTGRAGRAGTVVLLYSPRERRELALLE 353

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           R     +    AP  + ++      + ++         D      V  A  D + +
Sbjct: 354 RAIARRIERAGAPRPQDVQRAKLAGLQRN--LAAQRDDDRSAWRAVAQAWIDAKDV 407


>gi|145351031|ref|XP_001419891.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580124|gb|ABO98184.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 485

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/488 (26%), Positives = 222/488 (45%), Gaps = 15/488 (3%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L     +F P
Sbjct: 1   MKGIEQMGFKTMTEVQARCVPPLLAGKDVLGAARTGSGKTLAFLVPSVELLYH--AKFMP 58

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
            +    + ++PTRELA+Q+    + L  K      + IGG +   E   L  G +++V T
Sbjct: 59  RNGTGVMVLSPTRELALQIYNVAQQLMEKHSQTHGLIIGGANRRAEAERLIKGVNLLVAT 118

Query: 132 PGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           PGRL DH++       S LK  V+DEAD MLD+GF +++  I+   PK+R+ ++FSAT +
Sbjct: 119 PGRLLDHMQNTRGFTFSSLKVFVMDEADRMLDIGFEEEMRTIVKMLPKERQTMLFSATQT 178

Query: 191 PAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
             +  LA+   K  + + +         + ++    +V    R   +   L+ +  K  +
Sbjct: 179 TKVEDLARLSLKSPIYIGVDDSRAVSTATGVEQGYCVVPSEQRFLLLFTFLKKNLKKKIM 238

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF S+  SV    ++L      V  + G+  QQ R+            V + TDVAARG+
Sbjct: 239 VFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKADRGVLLCTDVAARGL 298

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFREANVSV 367
           D+P ++ +I  +   +P+  +HR GRT R    KG ++  +        + L + A V +
Sbjct: 299 DIPAVDWIIQYDPPDDPKEYIHRVGRTARGTDGKGRALLFLIPEELSFLKYL-KSAKVPL 357

Query: 368 VWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI----AAGFLR 422
                P+ + A  +   +++++   +L +   D  +   +    H  + +    A     
Sbjct: 358 NEYEFPTKKIANVQSQLEKLVEKNYYLHTSARDAYRAYILAYNSHTLKDVYNVHALDLNA 417

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW-FSLS--VGSKQKA 479
           +  +          ++L S   + R  SR     G      KG+   FS     G K  +
Sbjct: 418 VASSFGFHKPPKVQLNLDSKASKGRTKSRGDGGPGSDYRRQKGTGHNFSAENPYGKKDSS 477

Query: 480 EARWLMPM 487
           ++R  + M
Sbjct: 478 DSRQFVRM 485


>gi|116671331|ref|YP_832264.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116611440|gb|ABK04164.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 585

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 222/465 (47%), Gaps = 31/465 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  KSFADYNVRADIVESLADAGITHPFPIQAMTLPVALAGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D    + +   AP AL I PTRELAVQV ++LE    K    +A   GG +  
Sbjct: 97  QRVVGRDDPGFDKLAVPGAPQALVIVPTRELAVQVAKDLENAARKRNARIATIYGGRAYE 156

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   LQ G  IVVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++  
Sbjct: 157 PQVDSLQKGVEIVVGTPGRLIDLYKQKHLSLKNVKIVILDEADEMLDLGFLPDVETLIAG 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRD 232
           +P  R+ L+FSAT+   +  +A+ Y      +  A  +       DI          D+ 
Sbjct: 217 TPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKI 276

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+
Sbjct: 277 EVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +  + 
Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             R   + +   +SV        E +    +   L + L +             +LA  D
Sbjct: 397 MPRWGLINKALGLSVP-------EPVETYSSSPHLYEELDIPEGTKGRLPRDKRVLAGVD 449

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            E +               E++      +GR   RD  R    GG
Sbjct: 450 AEVL---------------EDLGETGKKTGRGSARDGGRDTARGG 479


>gi|323493918|ref|ZP_08099035.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
 gi|323311859|gb|EGA65006.1| ATP-dependent RNA helicase DbpA [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 212/401 (52%), Gaps = 13/401 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L   GY  +T +Q+  L   L  KDV+   +TGSGKT  F L L S L  + 
Sbjct: 10  LKTELLETLDSLGYTEMTPIQQQALPMVLSGKDVIGQGKTGSGKTATFSLGLLSNLNVKR 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++GA
Sbjct: 70  FRV------QTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGMPMGPQIGSLEHGA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    +++  L  +VLDEAD MLD+GF D I+ I++++P KR+ L+F
Sbjct: 124 HILVGTPGRILDHMSKGRISLDELNTLVLDEADRMLDMGFEDAIDTIIEAAPAKRQTLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I +LA     +   V + S + + +       L    +RD+A+  +L  H  +
Sbjct: 184 SATFPNNIESLAAKVMVNPEMVKVESTHEKTTIEQRFYQLNTTEERDDALEALLLTHKPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L+   F VV L G++ Q+ER  AL M  +    + +ATDVAA
Sbjct: 244 SSVVFCNTKKEVQNVADELSHRGFSVVELHGDMEQREREQALTMFANKSISILVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R+    ++
Sbjct: 304 RGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGIAFSFFSEKEAYRVARIDEYMDI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           ++     P      E+  +R     +    I G +K+ V  
Sbjct: 364 AISPVQLP------EKPIERPFYPKMQTIQILGGKKQKVRA 398



 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G KQK  A  ++  L + +G++ + IG I +   +++V +  D V    
Sbjct: 380 YPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKIGKINILAMVSYVALEHDIVKPAL 439

Query: 523 RTVKLDK 529
           + +   K
Sbjct: 440 KQLTTGK 446


>gi|322828077|gb|EFZ32017.1| nucleolar RNA helicase II, putative [Trypanosoma cruzi]
          Length = 621

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 196/437 (44%), Gaps = 21/437 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+ +P  + EAL  +G   L  VQ       ++  +VLV A+TGSGKT+AFG+ +  
Sbjct: 52  FSDFDLLPNTV-EALKSQGITALFPVQALTYEAIMKGSNVLVQARTGSGKTLAFGIPIVE 110

Query: 61  TL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L      N++      P A+   PTRELA+QV   +  +    G VV    GGV+   +
Sbjct: 111 KLARMTKSNEQPVRGRGPAAVIFCPTRELAIQVRDVIAGISK--GFVVTALYGGVAYSTQ 168

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF------ 171
            R L +G  +VV TPGR  D +  + L +  +K V LDEAD MLD+GF+DDIE       
Sbjct: 169 ERALYSGVDVVVATPGRAKDFLEKRTLCLDRVKVVCLDEADHMLDIGFKDDIELLLQKVA 228

Query: 172 ------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                   + + +               + + +  +   +                R   
Sbjct: 229 EQNGSTEGNPTHQTLLFSATVPEWVHTCSFIPRKKEFIDMVGQGTMRAANTIKFYRRKCH 288

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            +      A +  +        +VF +T+      +    +   Q +   G++ Q++R +
Sbjct: 289 FSEVSCMLADLVKVYSGRHGRTLVFTNTKKECHDLSINNTKLDSQCL--HGDMQQEQRES 346

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  RD +  V IATDVAARG+DLP ++LVI     ++ +  +HR+GRTGRAGRKG+ V
Sbjct: 347 TMKSFRDNKFSVLIATDVAARGLDLPMVDLVIQCAPPTDIDAFIHRAGRTGRAGRKGVCV 406

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMV 404
            +     +   ER+ R A +     PAP+ + I    A+   +D   ++ S         
Sbjct: 407 LLHQPKDEYIVERIERHAKIKFEVLPAPTRDEILRAVARDAAEDLARVERSATNLFMDQA 466

Query: 405 DVLLAKHDPEKIAAGFL 421
             LL   D  +I A  +
Sbjct: 467 AELLKDADATEILASAI 483


>gi|317494076|ref|ZP_07952492.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917849|gb|EFV39192.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 202/401 (50%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P    E L+E GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ L   +   
Sbjct: 9   SLPAAQLENLAELGYASMTPVQAAALPAILEGRDVRAQAKTGSGKTAAFGIGLLQQIDVT 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +EL  L   T  + +    GG  +  +   L + 
Sbjct: 69  Q------FTTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPISHQLDSLVHA 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ +H+R K +++  +K +VLDEAD MLD+GF D I+ ++  +P  R+ L+
Sbjct: 123 PHIVVGTPGRIQEHLRKKSVSLDAMKVLVLDEADRMLDMGFADAIDDVISYTPTARQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  ++   Q++ V +     +                 +   +  +L     
Sbjct: 183 FSATYPQGIERISARVQREPVTIETGDVSALPDIEQQFYETSRGE-KLLLLQALLSNLQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+         L+     V+AL G+L Q+ER   L    +   RV +ATDVA
Sbjct: 242 ASCVVFCNTKRDCQDVYDALSGQDISVLALHGDLEQRERDQVLVRFSNRSCRVLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +LE+V++ ELS +PE  +HR GRT RAG+KG++V  +  +   RA  L     
Sbjct: 302 ARGLDIKELEMVVNYELSFDPEVHVHRIGRTARAGQKGLAVSFVAPSEMVRAHALEDYIG 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +   W  A  + A       + L+  +    I G  K  + 
Sbjct: 362 LKPNWLSADKMMA----SPMKPLEAEMVTLCIDGGRKAKIR 398



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
                 +  G K K     ++  L   +G+    +G I + P   +V +
Sbjct: 383 EMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPIHAYVAI 431


>gi|260777558|ref|ZP_05886451.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605571|gb|EEX31856.1| ATP-dependent RNA helicase DbpA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 458

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 137/402 (34%), Positives = 219/402 (54%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L+   Y  +T +Q+  L   L  KDV+   +TGSGKT AF L L S L  +
Sbjct: 9   NLRSELIETLNSLNYTEMTPIQQQALPIVLEGKDVIGQGKTGSGKTAAFTLGLLSNLSVK 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+ +  +   L++G
Sbjct: 69  RFRV------QTLVLCPTRELADQVAKEVRTLARGIHNIKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +N++ +  +VLDEAD ML++GF + I+ I+D +P+ R+ L+
Sbjct: 123 AHILVGTPGRILDHLSKGRINLAEMNTLVLDEADRMLEMGFEEAIDAIIDEAPQDRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I +LA    +D   + + S ++  +       L A  +RD+A+  +L  H  
Sbjct: 183 FSATFPKNIESLASKVMRDPQMIKVESTHQTTTIEQRFYKLNATEERDDALEALLLTHKP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++++VFC+T+  V + T  L+   F VV + G++ Q+ER  AL M  +    + +ATDVA
Sbjct: 243 ESSVVFCNTKKEVQKVTDELSHRGFSVVEIHGDMEQREREQALTMFANKSVSILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +  + R  R+    +
Sbjct: 303 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGVAFSFYSEKEEYRVARIDEYMD 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +++     P      E+  +R     +    I G +K+ V  
Sbjct: 363 IAISPAVLP------EKPVERPFYPKMQTIQILGGKKQKVRA 398



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +       +  G KQK  A  ++  L + +G++ + IG I + P +++V V  + V    
Sbjct: 380 YPKMQTIQILGGKKQKVRAGDILGALTKQAGLDGKKIGKINILPMVSYVAVEHEIVKPAL 439

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 440 KQLQNGK 446


>gi|242012580|ref|XP_002427009.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212511247|gb|EEB14271.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 538

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 192/372 (51%), Gaps = 10/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +++  Y   T +Q+  +   +  +D++  AQTGSGKT AF + + + LL +N
Sbjct: 138 LCSTLINLINKCQYHKPTPIQKHCIPIIMSGRDLMGCAQTGSGKTAAFLIPIINKLLEKN 197

Query: 67  DRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              S +S   P  + + PTREL +Q+  E       T + VA+  GG +V  +   ++NG
Sbjct: 198 QIMSKSSFCTPEVIIMTPTRELTIQIFEEARKFSRGTFLKVALTYGGTAVFHQVEKIKNG 257

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK----KR 180
            +I+V TPGRL D ++   ++ S  + ++LDEAD MLD+GF  +I+ +++        +R
Sbjct: 258 CNILVATPGRLLDFVQRGIIDFSMTEFLILDEADRMLDMGFISEIKKMINHPTMKSSSQR 317

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT    +  LAK +  + + V +       SD+  +   V+   + N ++ +L 
Sbjct: 318 QTLMFSATFPSEVQHLAKTFLNNYLFVVVGIVGGACSDVVQKFFSVSKFQKRNKLIELLE 377

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +G+   +VF   + +       L E  F   ++ G+  Q+ER  AL+  + G+  + +A
Sbjct: 378 SNGSSKCLVFVEQKRTTDFIATFLCEKNFPATSIHGDRDQREREEALRDFKTGKMDILVA 437

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ----NMQRRA 356
           T VAARG+D+ ++  V++ +L    +  +HR GRTGR G +G++          ++    
Sbjct: 438 TSVAARGLDIKNVAHVVNFDLPKTIDEYVHRIGRTGRVGNRGLATSFYDPLCDSHLAPAL 497

Query: 357 ERLFREANVSVV 368
            ++  +A   + 
Sbjct: 498 VKILSQAGQEIP 509


>gi|1170507|sp|P41380|IF4A3_NICPL RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3
 gi|19699|emb|CAA43514.1| nicotiana eukaryotic translation initiation factor 4A [Nicotiana
           plumbaginifolia]
          Length = 391

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 192/373 (51%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   + + G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +   +    
Sbjct: 25  IKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVD--- 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + +S   AL ++PTRELA Q  + +  +     V    CIGG SV  + R L++G  
Sbjct: 82  ---TKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQ 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+CD I+ + L    +K ++LDE+DEML  GF+D I  +    P + ++++ S
Sbjct: 139 VVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLIS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D VR+ +  +      I    V +     + + + ++       
Sbjct: 199 ATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTIT 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T  + E+ F V ++ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 259 QAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    + +  + 
Sbjct: 319 RGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYST 378

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 379 QIDEMPMNVADLI 391


>gi|313238875|emb|CBY13871.1| unnamed protein product [Oikopleura dioica]
          Length = 1036

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 5/365 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   +    +   T +Q   L   +  +DV+  A+TGSGKT+ F L +   +  + +   
Sbjct: 383 VLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLRHMEHQRE-VE 441

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ ++                GG  +  +  +L+ GA I++ 
Sbjct: 442 KGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELKRGAEIIIC 501

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+      VLDEAD M D+GF   +  IL+S    R++++FSA
Sbjct: 502 TPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRPDRQLVLFSA 561

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T   ++  LA+      + + +  ++    D+    V++   D+   ++ +  R+  + +
Sbjct: 562 TFPRSMEALARRILTKPLEITVGGKSVVCDDVQQNVVVLNDEDKFLKLLELLGRFQESGS 621

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF           K + +  +   AL G + Q +R + +   + G + + IAT VAAR
Sbjct: 622 VIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVSNLLIATSVAAR 681

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L LV++ +  ++ E+ +HR GRTGRAG KG +   + +   + A  + +   +S
Sbjct: 682 GLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKYAGDIIKALEMS 741

Query: 367 VVWEP 371
               P
Sbjct: 742 KAEVP 746


>gi|254911116|ref|NP_001157180.1| Vasa4 protein [Acyrthosiphon pisum]
          Length = 547

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 171/379 (45%), Gaps = 11/379 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
                NIP  + E +    YV  T +Q+  +   L  KD++ +AQTGSGKTVA+ L +  
Sbjct: 132 FDTLNNIPDRLMENIKMCNYVKPTPIQKYSIPIILSGKDLMATAQTGSGKTVAYVLPIIQ 191

Query: 61  TLLAEND---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            LL +     +    S P  + +APTRELAVQ+   +  L   TG+   VC GG  V  +
Sbjct: 192 KLLMDPQILVKDRNHSEPQVVIMAPTRELAVQIKMVVLKLARGTGISSFVCYGGTLVSHQ 251

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----EFIL 173
           +  +  G HI+V TPGRL + ++   +  S ++  VLDE D+MLD+  + DI    +   
Sbjct: 252 KNQILKGCHILVATPGRLNEFVQHGFITFSSVRFFVLDEVDKMLDIDLKPDIDKILDHFS 311

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S   R+ +M SAT+  A   LAK Y                S    +   +       
Sbjct: 312 MPSVMDRQTIMLSATLPDATQHLAKFYLNKNYLFLAVGIISSASKDIKQNFCLVNRFNKR 371

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+  +    +   IVF + + +       L E      ++ G+  Q +R  AL   R  
Sbjct: 372 DILTSILKKDSVGTIVFVNQKWTADFLATYLCEKHIPSTSIHGDRLQDQREIALDDFRTR 431

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +AT VAARG+D+  +  V++ ++    E  + R GRTGR G KG++  +   +  
Sbjct: 432 KMNVLVATTVAARGLDIKCVNHVLNYDMPLVIEEYVQRIGRTGRLGNKGIATSLFDPDED 491

Query: 354 RRAER----LFREANVSVV 368
                    +   AN  + 
Sbjct: 492 YLLVDPIISILASANQEIP 510


>gi|162464317|ref|NP_001105848.1| putative RH2 protein [Zea mays]
 gi|84322402|gb|ABC55720.1| putative RH2 protein [Zea mays]
 gi|146217167|gb|ABQ10647.1| RNA helicase 2 [Zea mays]
 gi|194700534|gb|ACF84351.1| unknown [Zea mays]
          Length = 407

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L +
Sbjct: 33  VSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTV 92

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     V V  CIGG S+  + 
Sbjct: 93  CQIVD------TAVREVQALILSPTRELASQTERVMLAIGDHLNVQVHACIGGKSIGEDI 146

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG H+V GTPGR+CD I+ + L    +K +VLDEADEML  GF+D I  +    P 
Sbjct: 147 RRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPP 206

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  + VR+ +  +      I    V +     + + + +
Sbjct: 207 ELQVVLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 266

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ QQER   +   R G  RV
Sbjct: 267 LYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSAMHGDMPQQERDAIMGEFRSGATRV 326

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + ++  R   
Sbjct: 327 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILR 386

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 387 DIEQYYSTQIDEMPMNVADLI 407


>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
            anisopliae ARSEF 23]
          Length = 1245

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 186/383 (48%), Gaps = 11/383 (2%)

Query: 12   GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
             + +   GY   T++Q   +   +  +DV+  A+TGSGKTVAF L +   ++ +      
Sbjct: 630  LDVIDNLGYEKPTTIQMQAIPTLMSGRDVVGVAKTGSGKTVAFLLPMFRHIM-DQPPIKD 688

Query: 72   ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
               P+ L + PTRELA Q+ R+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 689  TDGPVGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKRGAEIIVCT 748

Query: 132  PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            PGR+ D     +G+  N+  +  VVLDEAD M D+GF   +  I       ++ ++FSAT
Sbjct: 749  PGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPDKQTILFSAT 808

Query: 189  ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGA 244
            +   I +L K   K  V + +   +    +I+    +   + +   ++ +          
Sbjct: 809  MPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREENTKFLRVLELLGELYDRDED 868

Query: 245  KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              A++F   +       K L    +  +++ G   Q +R + +   + G   + +AT VA
Sbjct: 869  ARALIFVDRQEKADDLLKELMVKGYPCMSIHGGKDQVDRDSTISDFKKGVVPLLVATSVA 928

Query: 305  ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            ARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G++V  +  + +  A  + +   
Sbjct: 929  ARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPDQENCAPGIAKALE 988

Query: 365  VSVVWEPAPS-VEAIRERDAQRI 386
             S   +P P  +  +R+   +++
Sbjct: 989  QS--EQPVPERLNEMRKAHREKV 1009


>gi|238789022|ref|ZP_04632811.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
 gi|238722786|gb|EEQ14437.1| ATP-independent RNA helicase dbpA [Yersinia frederiksenii ATCC
           33641]
          Length = 460

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 200/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++ +L ++   
Sbjct: 185 SATYPVGIERISARV-QRQPVNVEVEDGDEEPAIEQVFFETTREKRLPLLIAVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVFEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL LV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMARAHAIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R    +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSTNAMLEPEMVTLCIDGGRKAKIR 399



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKACAKRAL 441

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 442 AQLQQGK 448


>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase domain-containing protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 183/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   ++  GY   + +Q   + P    +DV   A+TG+GKT AF L +   LL   
Sbjct: 21  LDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIHRLLTGA 80

Query: 67  DRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +P+  P    AL ++PTRELA Q    +       G+ VA+ IGG    R+ R L +
Sbjct: 81  GGAAPSGPPGAVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQARALLD 140

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL DH+    + + H   +VLDEAD MLDLGF +D+  I    P + + L
Sbjct: 141 GVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLPVRHQTL 200

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+SPAI+ L +      +++    +      I  + +    + +  +++ +LR   
Sbjct: 201 LFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLAVLRREA 260

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+ +     + L        AL G+  Q  R   L   R GR  V +ATDV
Sbjct: 261 GGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLVLVATDV 320

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+ D+ LV++ ++   PE  +HR GRT RAGR+G ++ +     + +   + R++
Sbjct: 321 MARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLRDIERQS 380

Query: 364 NVSVV 368
              + 
Sbjct: 381 GARIT 385


>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
 gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
          Length = 516

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 223 IDDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 403 VSLVHHAEQGALKRIERFVRAPL---PVNVIEGFEPRKA 438


>gi|310794364|gb|EFQ29825.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 695

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 192/386 (49%), Gaps = 20/386 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 193 TFSNPPLDDHLISNIEMARYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 252

Query: 61  TLLAENDRFSPASA-----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
                     P +A           P +L +APTREL  Q+  E      ++ V   V  
Sbjct: 253 QAFINGPSTVPPNAAGGFGRQRKAYPTSLILAPTRELVSQIYEESRKFAYRSWVRPCVVY 312

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   I
Sbjct: 313 GGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQI 372

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I       + + R+ LMFSAT    I  LA+++ KD + +++        +I  +   
Sbjct: 373 RRIVEGEDMPNVQNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEY 432

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V   D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER  
Sbjct: 433 VEDVDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERER 492

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G S 
Sbjct: 493 ALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGHST 552

Query: 346 FVIPQNMQ---RRAERLFREANVSVV 368
               +  +   R    L +EAN  V 
Sbjct: 553 AFFNRGNRGVVRELLELLKEANQEVP 578


>gi|224086197|ref|XP_002193200.1| PREDICTED: DEAD box polypeptide 42 protein [Taeniopygia guttata]
          Length = 923

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     +          +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     + +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|266619670|ref|ZP_06112605.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
 gi|288868767|gb|EFD01066.1| ATP-dependent RNA helicase DbpA [Clostridium hathewayi DSM 13479]
          Length = 483

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/388 (31%), Positives = 198/388 (51%), Gaps = 15/388 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL   GY   T +Q  ++   L  ++V   ++TG+GKT AFG+ L   ++ E 
Sbjct: 15  LAPEIIHALDLLGYQEPTEIQREVIPAVLEGRNVAARSRTGTGKTAAFGIPLCEKIVWEE 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 + P AL + P+RELAVQV  EL  +  +  + V    GG  + ++ R ++  +H
Sbjct: 75  ------NLPQALVLEPSRELAVQVSNELFHIGRRKRLKVPAVFGGFPIDKQMRTIKQKSH 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D I+ + L ++ ++ +V+DEAD MLD+GF ++++ I+   PK  R+L+FS
Sbjct: 129 IVVGTPGRVMDLIQRECLKLAGIRYLVIDEADLMLDMGFLEEVKQIMALLPKGGRVLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  DAV +    +  +   I          ++ + +   L     ++
Sbjct: 189 ATLDEKVRLLVDEYMADAVMIAPEPDAEEEPAISQVVYRADPEEKYDLLKRTLILENPES 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC TR  V+   + L         + GE+ Q+ER   +   R G  R  IATDVAAR
Sbjct: 249 CMIFCGTREMVNVLLQKLKRDRIFCGMIHGEMEQRERLKTVDAFRRGGFRFLIATDVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN-- 364
           GID   ++LV++ +     E  +HR GRTGR G  G +V ++ ++ +R    +       
Sbjct: 309 GIDFDKIDLVVNYDFPGGRETYVHRIGRTGRNGENGRAVSLLCESEERMLHMVEAYMGRE 368

Query: 365 VSVVWEPAPSVEAI-------RERDAQR 385
           +SV   P P  EA        RER A +
Sbjct: 369 LSVTTCPEPDEEATKAFWTRQRERRAPK 396


>gi|262273619|ref|ZP_06051433.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
 gi|262222597|gb|EEY73908.1| ATP-dependent RNA helicase RhlB [Grimontia hollisae CIP 101886]
          Length = 434

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-E 65
           +   + + L E+G+ N T +Q   L   L  +D+   AQTG+GKT+AF  A    LL  E
Sbjct: 18  LHADVLKGLEEKGFHNCTPIQALALPVLLTGQDIAGQAQTGTGKTMAFLTATFHHLLTTE 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  +   L A T +   +  GG +  +++  L+NG 
Sbjct: 78  APADRKKNCPRAIIMAPTRELAIQIYNDAAPLLASTSLTAGLAYGGEAYEKQKDTLENGV 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + + +++  ++AVVLDEAD M DLGF  DI F+    P+      +
Sbjct: 138 DILIGTCGRIIDFYKQRVIDLRCIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPSERLNM 197

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +  D+   +  ++    
Sbjct: 198 LFSATLSYRVQELAFEHMTNPEHVVVEPEQKTGHRIKEELFYPSNKDKMRLLQTLIEEEW 257

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         LA    +   L+G++ Q++R   L+    G   + +ATDV
Sbjct: 258 PERAIVFANTKHRCEDIWGHLAADGLRAGLLTGDVPQKKRVKILEEFTKGSLDILVATDV 317

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 318 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGASISFACEEYAVNLPAIEEYI 377

Query: 364 NVSVV 368
           + ++ 
Sbjct: 378 DHTIP 382


>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
 gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
 gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
          Length = 631

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 202/398 (50%), Gaps = 19/398 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 69  LDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQP 128

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P                    P  L + PTRELA+QV             +  A  
Sbjct: 129 EPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 188

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 189 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 248

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 249 IEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFTDD 308

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 309 MSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTL 368

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 369 TALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 428

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
           +      +  R+ R  +  +       +E  R    +R
Sbjct: 429 VNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRR 466


>gi|332024917|gb|EGI65105.1| ATP-dependent RNA helicase abstrakt [Acromyrmex echinatior]
          Length = 625

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+     + I   L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 183 LKTFKEMKFHKGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPI 242

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +     F     P  L I P+RELA Q    +              +   + IG
Sbjct: 243 IEFCLEQEIDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQTDCPEIRCCLAIG 302

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +  G HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+ 
Sbjct: 303 GVPVSESLAIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVR 362

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 363 TIFSFFKGQRQTLLFSATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEA 422

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G + Q+ERS +++  
Sbjct: 423 KIVYLLECLQKTAPP-VLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAF 481

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R GR  V +ATDVA++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 482 RAGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 541

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 542 ANDESVLLDLKHLLMEAKQKVPP 564


>gi|293331893|ref|NP_001169380.1| hypothetical protein LOC100383248 [Zea mays]
 gi|224029005|gb|ACN33578.1| unknown [Zea mays]
          Length = 498

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/352 (30%), Positives = 177/352 (50%), Gaps = 6/352 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I + +   G+ + T +Q       ++ +DV+  A+TGSGKT+ + L  
Sbjct: 149 ITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAMQNQDVVAIAKTGSGKTLGYLLPG 208

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  + S  + P  L +APTRELA Q+  E       + +      GG     + 
Sbjct: 209 FMHI--KRLQNSTRNGPTVLVLAPTRELATQILDEAVKFGRSSRISCTCLYGGAPKGPQL 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 267 RDLDRGVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPH 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +     V+V I S +    +S I     ++  S++   + 
Sbjct: 327 RRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIITPSEKQRRLE 386

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR   + + I+   T   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 387 QILRSQDSGSKILIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLNQFRSGRSP 446

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++   +
Sbjct: 447 ILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYIFL 498


>gi|157962823|ref|YP_001502857.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847823|gb|ABV88322.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +A+S RGY  LT VQ  +L   +  KD++  AQTG+GKT AF L L +TL+ E
Sbjct: 7   DLHPKILDAVSARGYQQLTQVQSQVLPVAMEGKDIMACAQTGTGKTAAFALPLLNTLIKE 66

Query: 66  -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                      +  S+   L + PTRELA+QV   +               GG +++ +R
Sbjct: 67  YSLFTDSEAELTHQSSVKVLVLTPTRELAIQVADNITAYAQFLPFKTTAVYGGSNMNPQR 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  I+V TPGRL DHI   GL++S++  +V+DEAD MLDLGF  DIE +      
Sbjct: 127 KALQAGVDILVATPGRLFDHIGQFGLDLSNVTHLVVDEADRMLDLGFVRDIEKVKKLVAP 186

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L FSAT S A+ TLA+     A      + +   S I     LV    +   +  +
Sbjct: 187 AHQTLFFSATYSDAVKTLAEKM-LIAPEWINVATSATASLITQEIYLVDTRRKAELLSEL 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF STR S       L     +     GE +Q  R+ AL+  + G+ RV 
Sbjct: 246 IGRNNWQQVLVFVSTRESAEHLHAELKLDGVKNAVFHGEKTQGARNRALEEFKSGKLRVM 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +    +   + 
Sbjct: 306 VATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLAGRAISFVSPQDREMMQE 365

Query: 359 LFREANVSVVWEPAPSVEA 377
           +      ++     P  E 
Sbjct: 366 IEVLIAQTLPRITMPGYEE 384


>gi|66522071|ref|XP_624210.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Apis mellifera]
          Length = 772

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 180/370 (48%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 262 FDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAKTGSGKTAAFIWPMLVHIMDQR 321

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL+ Q+ +E         V V  C GG S   + + L+ GA 
Sbjct: 322 E-LKEGDGPIGLILAPTRELSQQIYQEARKFGKVYNVQVCCCYGGGSKWEQSKALEGGAE 380

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR+ D ++ K  N++ +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 381 IVVATPGRIIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICNHVRPDRQTLLFS 440

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--RDNAIVNILRYHGA 244
           AT    +  LA++   D VR+        ++D+    ++   +   +   ++  L    +
Sbjct: 441 ATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVFNNNPTGKWTWLLQNLIEFLS 500

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +++   T+   +       +     V  L G++ Q ER+  +   +       +ATDV
Sbjct: 501 AGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIERNKVITAFKKKEVSTLVATDV 560

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V++ +++ + +   HR GRTGRAG KG +  ++ +  +  A  L R  
Sbjct: 561 AARGLDIPHIRTVLNYDVARDIDTHTHRIGRTGRAGEKGTAYTLVTEKDKEFAGHLVR-- 618

Query: 364 NVSVVWEPAP 373
           N+    +  P
Sbjct: 619 NLEGANQEVP 628


>gi|261210411|ref|ZP_05924705.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
 gi|260840469|gb|EEX67035.1| ATP-dependent RNA helicase RhlB [Vibrio sp. RC341]
          Length = 436

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 196/391 (50%), Gaps = 12/391 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L ++G+V  T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LQPQVIDGLEKKGFVYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLTTP 75

Query: 67  DRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P A+ +APTRELA+Q+  + E L A TG+  A+  GG S  ++   LQ+G 
Sbjct: 76  AAEGRTDTQPRAIIMAPTRELAIQIYNDAEPLLASTGLKAALAYGGESYDKQLAKLQSGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + +  ++++++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQRVFSLNYIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+    +    LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEQLWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQRRAERLF 360
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +         E   
Sbjct: 316 AARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPAIESYI 375

Query: 361 REANVSVVWEP------APSVEAIRERDAQR 385
             A  +  ++P       P+  ++R    QR
Sbjct: 376 EHAIPTSDYDPSALLTDLPAPLSLRSSPQQR 406


>gi|255560866|ref|XP_002521446.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223539345|gb|EEF40936.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 781

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 180/385 (46%), Gaps = 7/385 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I   +   G+   T +Q       L+ KD++  A+TGSGKT+ + L  
Sbjct: 162 LTTFEATGFPSEILREVLSAGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPG 221

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R  P   P  L ++PTRELA Q+  E       + +      GG     + 
Sbjct: 222 FIHL--KRCRNDPQLGPTVLVLSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQL 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L  G  IVV TPGRL D +  + +++S +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 280 KELDRGVDIVVATPGRLNDILEMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPS 339

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    E   +  I     ++A  ++   + 
Sbjct: 340 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLE 399

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR     + I+   +   +           F   A+ G+ SQ ER + L   R GR+ 
Sbjct: 400 QILRSQEPGSKIIIFCSTKKMCDQLARNLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSP 459

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++         + A
Sbjct: 460 VLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYA 519

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
             L +    +    P P +  +  R
Sbjct: 520 SDLIKVLEGASQRVP-PEIRDMASR 543


>gi|302038481|ref|YP_003798803.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
 gi|300606545|emb|CBK42878.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
          Length = 442

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 6/380 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     + + L + G+   T +Q A +   L  +D+L  A+TGSGKT+AF + L
Sbjct: 1   MVSFAELSLTSFLADRLQQAGFTAPTPIQSAAIPLALEGRDLLAQAKTGSGKTLAFLIPL 60

Query: 59  ASTLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               + E  + +  A +P AL +APTRELA+Q+  EL      +   +AV  G       
Sbjct: 61  IERAVKEGWKPAGSARSPRALVLAPTRELALQIEMELRKYAPPSVTSLAVYGGVPIERHY 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    IV+GTPGRL D    + L++  ++ VV+DEAD+MLD GF  DI+ IL   P
Sbjct: 121 -RALRQPPMIVIGTPGRLLDVAGTRHLDLRGIEYVVMDEADQMLDRGFLRDIQRILQLLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT SP I TLA++  K+  R  +       + I +   +V        +++
Sbjct: 180 SQRQTMLFSATFSPEILTLAESMLKNPARTAVDPGVNTPTTITHAYYVVPSESSRVQLIH 239

Query: 238 ILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            L         ++VFC  +  V R    L      V A++G  SQ +R   L   R GR 
Sbjct: 240 TLLQSPESGDQSMVFCDQKYKVKRLAARLGGEPASVGAITGNHSQAQRERTLTAFRSGRL 299

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R  +ATDVAARG+D+P +  VIH EL  NP + +HR+GRTGRA R G ++ ++    +  
Sbjct: 300 RTLVATDVAARGLDVPSVSQVIHYELPGNPTSYVHRTGRTGRAERSGATLLILSPKEEHE 359

Query: 356 AERLFREANVSVVWEPAPSV 375
              + R   +       P++
Sbjct: 360 YLAMVRRLRIQTKRLTLPAL 379


>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
 gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
          Length = 403

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 194/380 (51%), Gaps = 10/380 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +    ++ + G+   T VQE  +   L  KD++  AQTG+GKT AFG+ +  T+  ++
Sbjct: 18  ISKETLNSIRKMGFKKPTEVQEKTIPLILEGKDIIAQAQTGTGKTAAFGIPIVETVNTKS 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV +E++ +  +  +      GG S+  +   L+ G  
Sbjct: 78  RKI------QALVLVPTRELAIQVTKEIKDIGREKRIFALAVYGGKSIRHQIDFLKKGKD 131

Query: 127 IVVGTPGRLC-DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+        D I  K LN++ +K  VLDEAD MLD+GF +DIEFI + +P  ++ L+F
Sbjct: 132 VVIVGTPGRIKDLIERKVLNLNDVKIFVLDEADRMLDMGFIEDIEFIFEQTPPVKQTLLF 191

Query: 186 SATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+    +    +    D   V I  E      I  +A  V        +  IL  +  
Sbjct: 192 SATMPKAIMRLAERFLNDDYEIVKIKPEEVTVDRIKQKAYRVDTGKEFETLTKILNENEG 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +IVF  T+      +K L    F   A+ G+ SQ +R   L+  R  R  + +ATDVA
Sbjct: 252 KKSIVFTETKRGADELSKKLRREGFNADAIHGDYSQAKRERVLRDFRRNRIDILVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA- 363
           ARG+D+  +++V +  L  + E+ +HR GRTGRAG+ G+++ +I     R  E + ++  
Sbjct: 312 ARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLAISIISTLEDRLFEIVKKKTR 371

Query: 364 -NVSVVWEPAPSVEAIRERD 382
            ++ ++      +E +  RD
Sbjct: 372 SDIQLINLSDKPIEKLERRD 391


>gi|301119687|ref|XP_002907571.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
 gi|262106083|gb|EEY64135.1| ATP-dependent RNA helicase DBP2, putative [Phytophthora infestans
           T30-4]
          Length = 546

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/417 (27%), Positives = 186/417 (44%), Gaps = 49/417 (11%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  + P+ + E +   G+   T +Q       L  +D++  + TGSGKT+AF L    
Sbjct: 102 SFEEASFPEYVLEEVVRLGFDKPTPIQCQGWPMALSGRDMVGISATGSGKTLAFLLPAIV 161

Query: 61  TLLAE-----------------------------------------NDRFSPASAPLALA 79
            + A+                                              P   P+ L 
Sbjct: 162 HINAQVRILQSLFTKLCIAHDGCSRSDKKKQHANTSNPSALACVCFLPYLQPGDGPIVLM 221

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           IAPTRELAVQ+  E     A + +      GGV    +  DL+ G  I + TPGR+ D +
Sbjct: 222 IAPTRELAVQIQAECNKFGASSKIKNTCVYGGVPKGGQIADLRRGVEICICTPGRMIDML 281

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
                N+  +  +VLDEAD MLD+GF   +  I+      R+ LM+SAT    I  LA +
Sbjct: 282 SMGKTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLMWSATWPKEIVALAND 341

Query: 200 YQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASV 257
           +  D ++V + S +   +  I     ++    + +++ +     +     I+FC T+   
Sbjct: 342 FLTDFIQVTVGSLDLTANKRIKQIVEVMDDHQKYSSLQDHLRDIYEGGRIIIFCETKRGA 401

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              ++ L    +   A+ G  SQ+ER   L+  +DGR ++ +ATDVA+RG+D+ D+  V+
Sbjct: 402 DELSRNLRNTRYICKAIHGNKSQEERDYVLREFKDGRTQILVATDVASRGLDIKDIRYVV 461

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE----RLFREANVSVVWE 370
           + ++  N E+ +HR GRT RAG KG S+     +   R      ++  EA   V  E
Sbjct: 462 NFDMPKNIEDYIHRIGRTARAGNKGTSISFFTASNNGRLAGPLVKIMEEAEQEVPRE 518


>gi|159482639|ref|XP_001699375.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
 gi|158272826|gb|EDO98621.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]
          Length = 392

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 194/380 (51%), Gaps = 9/380 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   + + +   L   G+   +++Q+  + P ++ +DV+  AQ+G+GK+    ++  
Sbjct: 19  NTFDAMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTC 78

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +            L ++PTRELA Q  + +  +     +    C+GG S+  + R
Sbjct: 79  QLVDVQQ------RECQVLILSPTRELAQQTEKVILAVGDFMNIQAHACVGGKSLGEDIR 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NG H+V GTPGR+ D I+ + L   H+K ++LDEADEML   F+D I  I    P +
Sbjct: 133 KLENGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPE 192

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  D +RV +  +      I    V +     + + + ++
Sbjct: 193 TQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A++FC+T+  V   T+ + ++ F V ++ G++ Q+ER   +   R G ARV 
Sbjct: 253 YDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVL 312

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    
Sbjct: 313 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRD 372

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + +  +  +   P    E I
Sbjct: 373 IEQYYSTQIDEMPMNVAELI 392


>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
 gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
          Length = 447

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/377 (27%), Positives = 189/377 (50%), Gaps = 3/377 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L   GY   T +Q+ ++   L  ++ + SAQTGSGKT+A+ L     +  E 
Sbjct: 8   LSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPALQQINPEA 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ +    P    ++PT+ELA Q+            + V +  GG     E   L+ G  
Sbjct: 68  EKVT-HHYPRLFILSPTKELAQQIYEVSRPFVNALDLNVVLLQGGGRRTVETERLKKGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TP R  +HI  + ++I  ++ +V+DEAD M D+GF   +E I     ++ + ++ S
Sbjct: 127 VIIATPQRALEHIEAQHIDIKAIRHLVVDEADMMFDMGFVGYLEKIFTMMTERSQKIIVS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+P +  LAK Y K   R+ +    +    I      V  S ++  +  ++     + 
Sbjct: 187 ATITPRVIKLAKTYIKPLKRIELDPPGKIADTITQMLYPVLRSKKEALLAWLISSGNYEK 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F   +       + L    ++V  L GE + QER  +L   R+GR R+ +ATD+AAR
Sbjct: 247 VLLFVRKKELADGVAESLRSWDYKVGILHGERTHQERKKSLNAFREGRYRILVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ DL++VI+ ++     + +HR GRTGRAGR+G+++ ++  +   +   L +     
Sbjct: 307 GLDISDLDVVINYDIPHVKHDFIHRVGRTGRAGREGIAITLVSPDEIEQLHDLQKVLGGK 366

Query: 367 VVWEPAP--SVEAIRER 381
           +     P  + + ++ R
Sbjct: 367 IKEVILPEYAPKEVKAR 383


>gi|82779039|ref|YP_405388.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae Sd197]
 gi|309784492|ref|ZP_07679130.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
 gi|123561185|sp|Q329V8|RHLB_SHIDS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81243187|gb|ABB63897.1| putative ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927598|gb|EFP73067.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 1617]
          Length = 421

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 188/366 (51%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  ++   LL+ 
Sbjct: 15  SLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHYLLSH 74

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                   + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G
Sbjct: 75  PAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRM 182
             I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  
Sbjct: 135 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLN 194

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++   
Sbjct: 195 MLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEE 254

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATD
Sbjct: 255 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATD 314

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +   
Sbjct: 315 VAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETY 374

Query: 363 ANVSVV 368
              S+ 
Sbjct: 375 IGHSIP 380


>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
           (Silurana) tropicalis]
          Length = 614

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 112/383 (29%), Positives = 190/383 (49%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 172 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 231

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  F+    P  L I P+RELA Q    +E+            +  A+CIG
Sbjct: 232 IMFCLEQEKRLPFAKREGPYGLIICPSRELARQTHSIIEYYCHLLQEDNFPHLRTALCIG 291

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   ++ G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI 
Sbjct: 292 GMSVKEQMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIR 351

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     + +N+        D+      V    
Sbjct: 352 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEA 411

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 412 KMVYLLECLQKTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 470

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+ +  V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 471 REEKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 530

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 531 SCDESVLMDLKALLMEAKQRVPP 553


>gi|322420867|ref|YP_004200090.1| DEAD/DEAH box helicase domain-containing protein [Geobacter sp.
           M18]
 gi|320127254|gb|ADW14814.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
          Length = 467

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 191/386 (49%), Gaps = 16/386 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   +   +   GY+  T +Q   + P +  +DVL  AQTG+GKT AFGL +  
Sbjct: 3   FKQF-NLHPKVQAGVEAVGYLTPTPIQLQAIPPVMAGQDVLGLAQTGTGKTAAFGLPVLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+             AL +APTRELA Q+   L  L  +T +      GGV+++ + + 
Sbjct: 62  RLVEGG-----RGQVRALVLAPTRELAEQINESLNALAQQTRLKSITVYGGVNINTQIKK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL DHI    +N+S ++ +VLDEAD+M D+GF  D+  IL + P KR
Sbjct: 117 LKEGTDIVVACPGRLLDHISQGTVNLSKVEVLVLDEADQMFDMGFLPDVRKILRALPGKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+   I  LA +           S     + + +    V    +   +  +L+
Sbjct: 177 QNLMFSATMPDDIRRLA-HEILCRPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFELLK 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R  AL   RDG  ++ +A
Sbjct: 236 HTDTESVLIFTKTKHRAKRVGEQLEKSGYKATSLQGNLSQNRRQAALDGFRDGTYQIMVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++   PE   HR GRTGRA + G +  ++    +     + 
Sbjct: 296 TDIAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTGEDEAMVRSIE 355

Query: 361 REANVSVVWE---------PAPSVEA 377
           R     +            PAP  +A
Sbjct: 356 RVLGAKIERRRLEGFDYAVPAPQKDA 381


>gi|226940616|ref|YP_002795690.1| ATP-dependent RNA helicase protein [Laribacter hongkongensis HLHK9]
 gi|226715543|gb|ACO74681.1| Putative ATP-dependent RNA helicase protein [Laribacter
           hongkongensis HLHK9]
          Length = 520

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 185/368 (50%), Gaps = 4/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL +      T VQ   L   L  +D++ SAQTG+GKT AF L   S LL E 
Sbjct: 11  LDARLVHALEQHNITTPTPVQAEALPLLLSGRDLMASAQTGTGKTAAFLLPALSRLLVEP 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              + +  P  L +APTREL  QV +   E+      V VA  IGG S   + + L    
Sbjct: 71  --VARSRGPRILVLAPTRELVQQVAKAAQEFSTKIPRVNVASVIGGTSFRTQNQMLTRPI 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D +R   ++ S L+ +VLDEAD MLD+GF +D+  I    PK R+   F
Sbjct: 129 EVMVATPGRLMDQMRSGRIDFSRLEMLVLDEADRMLDMGFSEDVMEIASQLPKARQTAFF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           +AT++  +   A     +  ++ IA++  +  +       +  +  +   + +IL     
Sbjct: 189 TATMTRRVLDFADELLTEPAKIEIAAQTAKHENIEQQAIFVDDIDHKRRLVRHILSQPDV 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K AIVF +T+         L     +  AL G++ Q++R+  L  +R G+  V +ATDVA
Sbjct: 249 KQAIVFVATKRDCDTLADELIVDGIRADALHGDMQQRDRTRTLTRLRSGQTEVLVATDVA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+ +L    E+ +HR GRTGRAG  G +V ++ +      +++ R   
Sbjct: 309 ARGIDVAGISHVINFDLPRFAEDYVHRVGRTGRAGATGTAVSLVGRQDAFPLKKIERFTG 368

Query: 365 VSVVWEPA 372
             ++    
Sbjct: 369 QKLIVTEI 376


>gi|183231239|ref|XP_650493.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169802550|gb|EAL45107.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 722

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 179/366 (48%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  +  + +    Y   + VQ   +   +   D +V A+TGSGKT+A+ + L   ++A+ 
Sbjct: 147 INPITMDVIKALKYEKPSPVQRQAIPVIMSGYDAIVCAKTGSGKTLAYTIPLIKHVMAQR 206

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P+ +  AP RELA Q+  E+        +      GG  +  +   L+ G  
Sbjct: 207 P-LSKGEGPIGIVFAPIRELAEQINTEINKFGKYLNIRSVAVFGGTGISNQIGALKRGTE 265

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D      G+  N+  +  VVLDEAD M D+GF   I+ I++     ++++
Sbjct: 266 IVVCTPGRMIDILVTNNGRITNLRRVTFVVLDEADRMFDMGFGPQIKRIIEGIRPDKQIV 325

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT   ++   A+ + K  + +     ++  + I+    ++    +   +++I+    
Sbjct: 326 MFSATFPISVEQHAREFLKKPIEIICGGRSQVSNTIEQIVEVIETKKKIERLISIVLEQN 385

Query: 244 AK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            K    I+F  T+ +     + L E     + L G + Q +R N +Q  + G  R  + T
Sbjct: 386 NKGGRIIIFTETQKNCDELYQNLMERNINCLLLHGGIDQIDRQNTIQEFKSGIGRTILIT 445

Query: 302 DVAA-RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
                RG+D+  LELVI+ +  ++ E+ +HR GRTGRAG++G ++  I +  +R +E + 
Sbjct: 446 TSLCARGLDVKGLELVINYDCPNHLEDYVHRVGRTGRAGKRGKAITFITKEEERYSEDIV 505

Query: 361 REANVS 366
           +   +S
Sbjct: 506 KALTLS 511


>gi|153002036|ref|YP_001367717.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS185]
 gi|217974608|ref|YP_002359359.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS223]
 gi|304410566|ref|ZP_07392184.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307304659|ref|ZP_07584409.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|151366654|gb|ABS09654.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|217499743|gb|ACK47936.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|304351050|gb|EFM15450.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912061|gb|EFN42485.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 419

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 184/385 (47%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RF+  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRFAGQA--RILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 AGNVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+             +          R      ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 RQEDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRV---IEELRPKNKE 382


>gi|328867087|gb|EGG15470.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 637

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 230/479 (48%), Gaps = 20/479 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +P  +    A++  G+  +T +Q   + P L+ +D+L +A+TGSGKT+AF +     
Sbjct: 149 FEKLPIEEKTKLAIATMGFKTMTPIQAKSIVPLLQGRDMLGAARTGSGKTLAFLIPAIEV 208

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+  N  F P +    + ++PTRELA+Q+      L A       + +GG     E   L
Sbjct: 209 LVKSN--FYPRNGTGVIIMSPTRELALQIYGVAAELMAHHSQTHGIIMGGADKKAEAERL 266

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G +++V TPGRL DH++      + +LK +V+DEAD ML++GF +++  I+   PK+R
Sbjct: 267 VKGVNLLVATPGRLLDHLQNTRGFVVKNLKCLVIDEADRMLEVGFEEEMHQIVKLLPKER 326

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVN 237
           + ++FSAT S  +  +A+   +         ++RQ S +   +   V+     R   +  
Sbjct: 327 QTMLFSATQSNKVDAIARVSFRSDPVYVGVDDDRQVSTVEGLEQGYVVCPSEKRFLLLYT 386

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  IVF S+  SV    ++L      V+A  G+  Q  R+N      + +  +
Sbjct: 387 FLKKNLNKKVIVFFSSCNSVKFHAELLNYIDIPVLAFHGKQKQTLRTNTFYEFVNAQKGI 446

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSV-FVIPQNMQRR 355
            + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG ++ F++PQ +   
Sbjct: 447 LLCTDVAARGVDIPSVDWIIQYDPPDDPKEYIHRVGRTARGTGKKGRALMFLLPQELG-- 504

Query: 356 AERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             +  + A V +     P  +    +   ++++    +L +   D  +   +  A H  +
Sbjct: 505 FLKYLKLAKVPLNEYEFPQKKVSNVQEQLEKLISHNFYLHNSARDAYRSYILSYASHSLK 564

Query: 415 KI------AAGFLRIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            I        G + I       P+  +T +   S   ++    +A + GG    +   S
Sbjct: 565 DIFDVNSLQLGHVSIAFGFQNPPKIPLTNIISTSALSKYESKDKAQRPGGSRDRSQPAS 623


>gi|311739401|ref|ZP_07713236.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305217|gb|EFQ81285.1| ATP-dependent RNA helicase RhlE [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 432

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 116/374 (31%), Positives = 181/374 (48%), Gaps = 5/374 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ +   L   G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S  + P AL +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LARL--AGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  ++   LDEAD+M D+GF   +  +L  +P 
Sbjct: 119 RSLARPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPA 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   +  L + +  D V  + A        + +    V      N +V  
Sbjct: 179 QGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERPARNEVVLR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L         L G+  Q  R+ A++   DG   V 
Sbjct: 239 IAARQGK-TIMFMRTKHGVDRQVKKLRRAGINAYPLHGDKGQGARTRAIEGFADGSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  + ++    ++  + 
Sbjct: 298 VATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDA 357

Query: 359 LFREANVSVVWEPA 372
           L ++A V+      
Sbjct: 358 LIKKAGVTATEHDI 371


>gi|126652237|ref|ZP_01724416.1| YqfR [Bacillus sp. B14905]
 gi|126590969|gb|EAZ85081.1| YqfR [Bacillus sp. B14905]
          Length = 434

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 186/382 (48%), Gaps = 9/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    +  A++E G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 9   NFQPFLQNAIAELGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 69  KQEV------QAVITSPTRELAQQIYDALSQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 123 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFVF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y    V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 183 SATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSKSRNKRLLEVIEGINPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR +       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 243 LAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQVRDLEYQYIVATDLAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++ +   + +    R+ +   +
Sbjct: 303 RGIDIQGVSHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVRVEK-MGI 361

Query: 366 SVVWEPAPSVE--AIRERDAQR 385
             V       E   ++ER A++
Sbjct: 362 PFVQMDVKDGEWSELKERHARK 383


>gi|326504546|dbj|BAJ91105.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326508600|dbj|BAJ95822.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 456

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/408 (29%), Positives = 208/408 (50%), Gaps = 13/408 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +   + + EA    G+   T +Q   +   L+ +DV+   QTGSGKT AF L + 
Sbjct: 26  STFAELGICRELVEACDAMGWKQPTKIQAGAIPHALQGRDVIGLGQTGSGKTGAFALPII 85

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL     F       A  ++PTRELA+Q+  + E L +  G+V +V +GGV   ++  
Sbjct: 86  QALLEHRQPF------FACVMSPTRELAIQIAEQFEALGSGIGLVCSVLVGGVDRMQQVL 139

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +    HIVVGTPGRL DH    KG +++ +K +VLDEAD++L+L F++ ++ IL   PK
Sbjct: 140 SIAKRPHIVVGTPGRLLDHLKDTKGFSLTKVKYLVLDEADKLLNLEFKESLDDILKEIPK 199

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  ++ L +   ++ V+V ++S+      +      V    +D  +V++
Sbjct: 200 ERRTYLFSATMTKKVSKLQRACLRNPVKVEVSSKYSTVDTLKQEWYFVPADYKDCYLVHV 259

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F  T  S       L    F+ +++SG++SQ +R  AL   +     + 
Sbjct: 260 LNELQGSMIMIFVRTCESTRLLALTLRNLGFKALSISGQMSQDKRLGALNKFKAKDFNIL 319

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA+RG+D+  +++V++ ++  N ++ +HR GRT RAG+ G +V  + Q      + 
Sbjct: 320 ICTDVASRGLDIQGVDVVMNYDIPMNSKDYVHRVGRTARAGQSGYAVSFVNQYEAEWFKL 379

Query: 359 LFREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKK 402
           + +     +        E +  R    D++RI    L  D      +K
Sbjct: 380 IEQLLGRQIPDRKVDMDEILILREHISDSKRIALTKLKEDGGHKKRRK 427


>gi|269468447|gb|EEZ80112.1| hypothetical protein Sup05_1361 [uncultured SUP05 cluster
           bacterium]
          Length = 461

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 128/402 (31%), Positives = 213/402 (52%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L+  GY ++T +Q+  L   L  KDV+   +TGSGKT AFGL L   L  +
Sbjct: 10  DLHPDLLKNLATLGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           + +        ++ + PTRELA QV  E+  L      + V    GG     +   L++G
Sbjct: 70  SFKA------QSIVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ +H+R   L +  +  +VLDEAD MLD+GF+D I+ I++  P KR+ L+
Sbjct: 124 VHIVVGTPGRIEEHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++A+   ++   V   S + + +   Y     +  DR  A+  +L  H  
Sbjct: 184 FSATFPNEIASIAERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+         L  + F  +A+ G+L Q+ER  AL    +    V +ATDVA
Sbjct: 244 ESVLIFCNTKIDTQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++V++  ++ +PE  +HR GRTGRAGR G++  +       + + L  + +
Sbjct: 304 ARGLDIDALDMVVNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDID 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF-LDSIQGDEKKMVD 405
                +P PS     +    ++++ PL     I G +K+ + 
Sbjct: 364 FDRYTDPLPS-----DSYLDKLIKKPLMTTLKIDGGKKQKLR 400



 Score = 62.7 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +  G KQK     ++  L    GI    IG I V  + ++V VS++ V +  + +
Sbjct: 386 MTTLKIDGGKKQKLRPGDIVGGLTGKGGIPGDKIGKINVSSNWSYVAVSSELVKVALKKI 445

Query: 526 KLDK 529
             DK
Sbjct: 446 SNDK 449


>gi|255576631|ref|XP_002529205.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223531323|gb|EEF33161.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 590

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 222/486 (45%), Gaps = 31/486 (6%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++   +   +A+ E G+  LT +Q   + P L  KDVL +A+TGSGKT+AF +    
Sbjct: 105 SFESLGLSEPTRKAIQEMGFQYLTQIQARAIPPLLVGKDVLGAARTGSGKTLAFLIPAVE 164

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N  F+P +    + I PTRELA+Q     + L       + + IGG +   E   
Sbjct: 165 LLY--NVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGSARKGEAER 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +  G +++V TPGRL DH++        +LK +++DEAD +L+  F ++++ I+   PK 
Sbjct: 223 IVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKS 282

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIV 236
           R+  +FSAT +  +  LA+   +         + R             +V  + R   + 
Sbjct: 283 RQTALFSATQTKKVEDLARLSFQITPVYIDVDDGRTKVTNEGLQQGYCVVHSAKRFILLY 342

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ + +K  +VF S+  SV   +++L     +   + G+  QQ+R+            
Sbjct: 343 SFLKRNLSKKVMVFFSSCNSVKFHSELLRYIQVECFDIHGKQKQQKRTTTFFDFCKAEKG 402

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQR 354
           + + TDVAARG+D+P ++ ++  +    P+  +HR GRT R  G KG + +F+IP+ +Q 
Sbjct: 403 ILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQ- 461

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + A V V        + A  +   ++++ +  +L+    D  +   +    H  
Sbjct: 462 -FLRYLKAAKVPVKEYEFDVKKLANVQSHLEKLVANNYYLNKSAKDAYRSYILAYNSHSM 520

Query: 414 EKI-----------AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           + I           AA F          P ++  +++ S   +FR  +      G S  N
Sbjct: 521 KDIFNVHRLDLQAVAASFC------FSCPPKVN-LNIDSNASKFRKKAHKGSRNGFSESN 573

Query: 463 FKGSSW 468
             G   
Sbjct: 574 PYGRQR 579


>gi|71747700|ref|XP_822905.1| ATP-dependent DEAD/H RNA helicase HEL64 [Trypanosoma brucei
           TREU927]
 gi|70832573|gb|EAN78077.1| ATP-dependent DEAD/H RNA helicase HEL64, putative [Trypanosoma
           brucei]
          Length = 568

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 182/368 (49%), Gaps = 7/368 (1%)

Query: 1   MKIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+++    P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +
Sbjct: 99  MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV 158

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              + +  +         P+ + +APTRELA Q+  E + +            GG     
Sbjct: 159 PALAHIAVQEP-LRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVY-CGCVYGGAPKGP 216

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I    
Sbjct: 217 QLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI 276

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAI 235
              R+ +MFSAT    I  LA  +QK  +R+++ S   + + D+  R +L     + + +
Sbjct: 277 RPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDEL 336

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +++ H  +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R    
Sbjct: 337 RKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPR 396

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVAARG+D+  LE VI+ +     ++ +HR GRTGRAG KG +  +I +   + 
Sbjct: 397 LCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQI 456

Query: 356 AERLFREA 363
              + +E 
Sbjct: 457 TPSVLKEL 464


>gi|330038915|ref|XP_003239739.1| RNA helicase [Cryptomonas paramecium]
 gi|327206664|gb|AEA38841.1| RNA helicase [Cryptomonas paramecium]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 166/363 (45%), Gaps = 7/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   + E GY   + +QE  +   L  KD+L  +++G+GKT AF +     + ++
Sbjct: 61  HLKEEILLGIIELGYKAPSPIQEESIPAVLSGKDILARSKSGTGKTSAFLIPSLHMINSQ 120

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
           N             + PTRELA Q     + L    + + V V  GG+S+  +   +   
Sbjct: 121 NPYI------QVTILVPTRELAFQTSYVCKKLGKYVSDLKVMVTTGGMSLQNDIVRMSQV 174

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI++GTP R+ D +     ++S  K ++LDEAD++L       IE + +      +  +
Sbjct: 175 IHILIGTPSRIFDLLEKGIADLSKCKILILDEADKLLSNELVKKIETMSNDYMPLDKQTI 234

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
             +   P      K+    +       E     +I         S + + I  +L+    
Sbjct: 235 LISATFPITVKHIKDTITRSPFEINLMEELVLKEILQYYAFTRESKKIDCITFLLKKIHK 294

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K +I+FC++   V   +K +++  +    +  ++ Q  R+      +  +  + IA+D+ 
Sbjct: 295 KQSIIFCNSSNRVELLSKKISQLGYCCYYIHAKMQQANRNRIFHEFKTNKYGILIASDLF 354

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+  +ELVI+ +L  + E  LHR GR GR G+ G+++  + ++ +    +  +E N
Sbjct: 355 TRGIDIISIELVINFDLPKSSETYLHRIGRCGRFGKGGIAISFVTEDDKLDLHKFEKELN 414

Query: 365 VSV 367
             +
Sbjct: 415 TKL 417


>gi|255325662|ref|ZP_05366759.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297272|gb|EET76592.1| ATP-dependent RNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 432

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 5/374 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ +   L   G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQRLVHVLHNEGITEPFPIQKAAIPDALAGKDVLGRGPTGSGKTYTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S  + P AL +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LARL--AGTGASKPAHPRALILAPTRELATQIHQRLDEPAATLGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  ++   LDEAD+M D+GF   +  +L  +P 
Sbjct: 119 RSLARPVDVLVATPGRAQDLIDQGKLHLDAVQITALDEADQMADMGFLPQVRKLLRLTPV 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   +  L + +  D V  + A        + +    V      N +V  
Sbjct: 179 QGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVQAAVDSMSHHLFFVGERTARNEVVLR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L         L G+  Q  R+ A++   DG   V 
Sbjct: 239 IAARQGK-TIMFMRTKHGVDRQVKKLRRSGINAYPLHGDKGQGARTRAIEGFADGSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+HA+  +  +  LHR+GRT R G  G  + ++    ++  + 
Sbjct: 298 VATDIAARGIDIADVSLVVHADPPAEHKAYLHRAGRTARGGAAGTVITLVMDEQRKEVDA 357

Query: 359 LFREANVSVVWEPA 372
           L ++A V+      
Sbjct: 358 LIKKAGVTATEHDI 371


>gi|73969115|ref|XP_860773.1| PREDICTED: similar to Probable RNA-dependent helicase p72 (DEAD-box
           protein p72) (DEAD-box protein 17) isoform 13 [Canis
           familiaris]
          Length = 624

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 178/372 (47%), Gaps = 34/372 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N PQ + + L ++ +   T +Q       L  +D++  AQTGSGKT+A+ L     +  +
Sbjct: 98  NFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +  +                              
Sbjct: 158 -PYLERGDGPICLVLAPTRELAQQVQQVADDYG--------------------------V 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 191 EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ +D  ++N+ +     + +I     +   S++D+ ++ ++    A
Sbjct: 251 SATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMA 310

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     I+F  T+      T+ +    +  + + G+ SQ ER   L   R G+A + IAT
Sbjct: 311 EKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIAT 370

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+  KG +         ++A  L +
Sbjct: 371 DVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIK 430

Query: 362 ---EANVSVVWE 370
              EAN ++  +
Sbjct: 431 VLEEANQAINPK 442


>gi|317046374|ref|YP_004114022.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316947991|gb|ADU67466.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 431

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 183/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLTHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L+ G 
Sbjct: 76  AAEGRQVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWVFRRIPPATQRLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNLPAIEEYI 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 GHGIP 380


>gi|187251183|ref|YP_001875665.1| superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186971343|gb|ACC98328.1| Superfamily II DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 502

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 192/378 (50%), Gaps = 14/378 (3%)

Query: 1   MKI--FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   F++  + ++  + +   G+   T VQ   +   +   DVL SAQTGSGKT AFG+
Sbjct: 1   MKNNNFQDFSLSEITLKTIENMGFTTPTPVQAQTIPLAIEGHDVLASAQTGSGKTCAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
            +   L+             AL + PTREL  QV +    L         A  +GG S+ 
Sbjct: 61  PVIEHLVQNKSNN-------ALIVTPTRELGEQVHKVFTMLTKNYPQLTSAFIVGGKSIT 113

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R L+     ++GTPGRL D I    L++S  K  V DE D MLD+GF + IE I+  
Sbjct: 114 QQSRALKKRPRCIIGTPGRLNDMINRGELDLSKTKVAVWDEMDRMLDIGFINQIESIMAK 173

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P KR+M+MFSAT    +  +A+ Y     R+++  EN    +++   + V   ++    
Sbjct: 174 LPVKRQMMMFSATYPKRVIKIAEKYLVAPKRISVDPENSVAVNVEEEIISVIRDNKFET- 232

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L      + ++F  T+ SV    K L +  F+  ++ G   Q +R+ A++  R+ + 
Sbjct: 233 LVSLLRAKGGSTLIFARTQTSVEWLDKHLTKESFKANSIHGGYRQGKRNLAIKDFREEKF 292

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+P ++LVI+ +L    E+ +HR GRT RAG KG+++  +  N +  
Sbjct: 293 DILVATDVAARGLDIPHIQLVINYDLPLRAEDYIHRIGRTARAGAKGLAISFVTPNDKHL 352

Query: 356 AERLFRE-ANVSVVWEPA 372
              + +      VV  P 
Sbjct: 353 WNDIQKFLKGQDVVQRPI 370


>gi|88856781|ref|ZP_01131435.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
 gi|88813949|gb|EAR23817.1| ATP-dependent RNA helicase [marine actinobacterium PHSC20C1]
          Length = 499

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E NI Q + +AL+ +G +    +Q   +   L  +D++  A+TG+GKT+ FGL + 
Sbjct: 1   MTFSELNIDQDMVDALATKGILEPFPIQTQTIPMGLAGQDIIGQAKTGTGKTLGFGLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +L       +P     AL + PTREL VQV  +L    +     +A   GG +   +  
Sbjct: 61  QSL-----GINPEPGVKALIVVPTRELCVQVAEDLVLAASNRSTKIAAIYGGKAYEGQVE 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +++GA ++VGTPGRL D    + L++  +K +VLDEAD+MLDLGF  DIE +   +P  
Sbjct: 116 QIKDGAQVIVGTPGRLLDLASQRMLSLKDIKVMVLDEADKMLDLGFLADIEKLFAQTPPT 175

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R  ++FSAT+   I         +   +R     E     +I +        D+D  I  
Sbjct: 176 RHTMLFSATMPGPIVALARRFMNKPIHIRATDPDEGLTQKNIKHVVYRAHNLDKDEVIAR 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    +VF  T+ + ++  + L +  F   A+ G+L+Q++R  A+   + G+  +
Sbjct: 236 ILQSEGRGKTVVFTRTKRAAAKLVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDI 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V  +      +  
Sbjct: 296 LIATDVAARGIDVNDVTHVINHTIPDDHDTYLHRAGRTGRAGKTGVAVTFVDWADMLKWT 355

Query: 358 RLFREANVSVVW 369
            + +  ++ +  
Sbjct: 356 HINKALDMGIPE 367


>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 860

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 216/464 (46%), Gaps = 19/464 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + + +A+++ GY   T +Q   +   L  KD+L SA TGSGKT AF L +  
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILE 294

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R +       L + PTRELA+Q     E L   T V   + +GG+S   +  +
Sbjct: 295 RLLY---RDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHE 351

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGRL DH+          ++ +VLDEAD +LD+GF+D++  +++S P  
Sbjct: 352 LRKRPDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDG 411

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-- 237
           R+ L+FSAT+S  +  LAK      VRV + +  +  S ++   + +      +      
Sbjct: 412 RQTLLFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLL 471

Query: 238 --ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
               R       IVF  ++  V R   +L     +V  L G+L+Q++R  ALQ  R+G  
Sbjct: 472 SLCTRVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEV 531

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+AARG+D+  +  VI+  +  +    +HR GRT RAG  G S   I +  ++ 
Sbjct: 532 DFLLATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKI 591

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD--- 412
            + +   A            +   +    +I +    +  I  +E + +D    + D   
Sbjct: 592 LKDIVSRAKTKAKSRTV--AQESIKLWRAKIDEMTDDVKDIIREELRELDFKKTEKDLMK 649

Query: 413 PEKIAAGFL----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
            E+I A  L     I   G   PE      +     + R++SR 
Sbjct: 650 AERIVANALGHKKLITDNGGIIPEAAPMERVWFQSKKEREESRE 693


>gi|15668850|ref|NP_247653.1| DEAD-box ATP dependent DNA helicase [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2500540|sp|Q58083|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
 gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 367

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 122/370 (32%), Positives = 200/370 (54%), Gaps = 15/370 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLAL 58
           M   E N+   I  A+  +G+   T +Q  ++   L  E +++  A+TGSGKT +F + L
Sbjct: 6   MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +   N          A+ + PTRELA+QV  E+E L     + +A   GG +++ + 
Sbjct: 66  IELVNENN-------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L   A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF  D+E IL++  K
Sbjct: 119 KAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +R+L+FSAT+   I  LAK Y  D   +       + +    ++ +    +     +  
Sbjct: 178 DKRILLFSATMPREILNLAKKYMGDYSFI-----KAKINANIEQSYVEVNENERFEALCR 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +     +VFC T+        +L +  F+  A+ G+LSQ +R   +++ +  + R+ 
Sbjct: 233 LLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KG ++ +I +   ++   
Sbjct: 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRY 352

Query: 359 LFREANVSVV 368
           + R   + + 
Sbjct: 353 IERAMKLKIK 362


>gi|169829133|ref|YP_001699291.1| ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus C3-41]
 gi|168993621|gb|ACA41161.1| Probable ATP-dependent RNA helicase yqfR [Lysinibacillus sphaericus
           C3-41]
          Length = 434

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 188/382 (49%), Gaps = 9/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A++E G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 9   NFQPFLQDAIAELGFTEPTPIQKEIIPLILKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 69  KQEV------QAVITSPTRELAQQIYDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 123 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFVF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y    V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 183 SATIPEKLQPFLKKYMDAPVHVHMNDKRPVAEGIDFMLVPVRSKSRNKRLLEVIEGINPF 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR S       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 243 LAVIFTNTRKSAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLEYQYIVATDLAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++ +   + +    R+ +   +
Sbjct: 303 RGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSEEDAVVRVEK-MGI 361

Query: 366 SVVWEPAPSVE--AIRERDAQR 385
             V     + E   ++ER A++
Sbjct: 362 PFVQMDVKNGEWSELKERHARK 383


>gi|288818118|ref|YP_003432466.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787518|dbj|BAI69265.1| ATP-dependent RNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751719|gb|ADO45202.1| DEAD/DEAH box helicase domain protein [Hydrogenobacter thermophilus
           TK-6]
          Length = 365

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/364 (33%), Positives = 199/364 (54%), Gaps = 10/364 (2%)

Query: 1   MKI-FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  F+ + +++ +A+ + GY   T +Q+  +   L+  D++  A TG+GKT AFG+ + 
Sbjct: 1   MEFNFQQLSEILQKAIRDLGYEEPTPIQKEAIPLALKGYDIMGQAATGTGKTAAFGIPIV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       S      AL + PTRELA+QV  +L  L     + V V  GG  V R+  
Sbjct: 61  EKI-------SKDDGLKALVLTPTRELALQVKEQLYALSKYKALKVFVFYGGTPVRRDLE 113

Query: 120 D-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +   +IV+GTPGR+ D +    LN+  +  +VLDEAD MLD+GF +DIE I+  +PK
Sbjct: 114 LLSKVVPNIVIGTPGRIKDLLSRGVLNLGGVSFLVLDEADLMLDMGFVEDIESIIAYTPK 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+  +FSATI   I  LA+ + KD  +     S   +    +    L +   + + +  
Sbjct: 174 DRQTFLFSATIPKEIELLARKHLKDDYKFVRVISAELKPKIEERLIRLNSSKQKISELER 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR H  +  I+F  T+      ++ L    F VV+L G+++Q++R NAL++ R+G+ + 
Sbjct: 234 ILREHLLEKVIIFVRTKKDARDISQELKNRGFSVVSLHGDMTQRQRENALKLFREGKVKT 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+  + LVI+ ++  +PE  +HR GRTGR G  G +  +I     +   
Sbjct: 294 VVATDVASRGLDIKGVSLVINYQIPEDPEVYIHRIGRTGRVGSYGKAYSLITPEDSKALW 353

Query: 358 RLFR 361
           R+ +
Sbjct: 354 RIKK 357


>gi|195146268|ref|XP_002014109.1| GL24500 [Drosophila persimilis]
 gi|194103052|gb|EDW25095.1| GL24500 [Drosophila persimilis]
          Length = 799

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/393 (27%), Positives = 185/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   +S   Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 289 ITTFDDVQLTEIIRNNVSLARYDKPTPVQKHAIPIIISGRDLMACAQTGSGKTAAFLVPI 348

Query: 59  ASTLLAENDRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + +        P +          P  L +APT +LA Q+  E +    ++ +  AV  
Sbjct: 349 LNQMYEHGMSAPPQNNRQYSRRKQYPSGLVLAPTHKLATQIFEEAKKFAYRSRMRPAVLY 408

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   + R+L  G H++V TPGRL D I    + + +++ +VLDEAD MLD+GF   I
Sbjct: 409 GGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQI 468

Query: 170 EFILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++             MFSAT    I  LA ++  + + + +        +I    + 
Sbjct: 469 RRIVEQLNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILW 528

Query: 226 VALSDRDNAIVN-------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           V   D+ + +++          Y      ++F  T+       + L +    V ++ G+ 
Sbjct: 529 VYEQDKRSYLLDLLSSIRDGPEYSKDSLTLIFVETKKGADSLEEFLYQCSHPVTSIHGDR 588

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR 
Sbjct: 589 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 648

Query: 339 GRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G  G++     +   N+      L  E    + 
Sbjct: 649 GNLGVATSFFNEKNRNICSDLLELLIETKQEIP 681


>gi|332162007|ref|YP_004298584.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666237|gb|ADZ42881.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 460

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPAGIEQISARV-QRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSANTMLEPEMVTLCIDGGRKAKIR 399



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 21/67 (31%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   + +    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGEASLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|318606043|emb|CBY27541.1| ATP-dependent RNA helicase DbpA [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 460

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPAGIEQISARV-QRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSANTMLEPEMVTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|221134543|ref|ZP_03560848.1| DEAD/DEAH box helicase-like protein [Glaciecola sp. HTCC2999]
          Length = 452

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 179/375 (47%), Gaps = 5/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   L+ + +   T VQ   +   +  +D+L  ++TGSGKT AF L +   L+ +
Sbjct: 13  NLDHRIVTTLTNKHFTEPTPVQANTIPYAMIGRDILCCSKTGSGKTFAFVLPIIHRLMNQ 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F+   A  AL +APTRELA QV  E+  L +   +   + +GG + + + + L++  
Sbjct: 73  KS-FAKRDA-RALILAPTRELAKQVYLEVRALVSALPLKAQLVVGGENFNDQVKALRHNP 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSSPKKRRM 182
            I+VGT GR+ DH+ G+ + ++ L+ +V DEAD MLDLGF      I    D   ++  +
Sbjct: 131 QIIVGTAGRVADHLSGRTVFLNGLEILVYDEADRMLDLGFAKQLLEINQAADHRKRQTML 190

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +              ++    +  +S                +  +   +  IL   
Sbjct: 191 FSATLDSPSLTHLTDTLLKQPEKIMLDSSFTIHSDITQQWYFADHIEHKHALLAAILNEV 250

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVFC+TR    R   +L E     +ALSG+L Q +R++ +     G+  V + TD
Sbjct: 251 EHNQAIVFCATREDTVRLKDLLNEANLDAIALSGDLLQNQRAHVMSSFISGQHSVLVTTD 310

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+  + LV++ +L    E  +HR GRTGRAG KG+++ ++          + R 
Sbjct: 311 VASRGLDMKKVSLVVNFDLPKLAEEYVHRIGRTGRAGAKGLAIALVGPRDWTAFTHIQRN 370

Query: 363 ANVSVVWEPAPSVEA 377
               +  +  P + A
Sbjct: 371 VGSDITIQSYPQLPA 385


>gi|149240601|ref|XP_001526175.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013500|sp|A5DZE6|DED1_LODEL RecName: Full=ATP-dependent RNA helicase DED1
 gi|146450298|gb|EDK44554.1| ATP-dependent RNA helicase ded1 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 664

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 182 LDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNG 241

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P  L +APTREL  Q+  E +    ++ V   V  GG  +  +
Sbjct: 242 PAPIPESTGAFSSHKVYPTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQ 301

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R L  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 302 IRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECD 361

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
               + R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 362 MPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDEEKKS 421

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+++L  +     IVF  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 422 VILDLLNANSEGLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 481

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 482 QAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 541

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 542 NIVKGMLDLLTEANQEVP 559


>gi|221117076|ref|XP_002155771.1| PREDICTED: vasa-related protein CnVAS2 [Hydra magnipapillata]
          Length = 890

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 195/383 (50%), Gaps = 15/383 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   N+  V  + L    Y   T +Q+  +   L ++DV+  A TGSGKT +F L +
Sbjct: 449 IQSFSEANLHPVCLKNLDLAKYKEPTPIQKYAIPAILAKRDVMACAXTGSGKTASFLLPI 508

Query: 59  ASTLLAEN-----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            + L+ E            + PLA  +APTREL VQ+  E       + +   V  GGV+
Sbjct: 509 ITNLMNEGLDNIDSNIDGVALPLAAILAPTRELVVQLFTEARKFSYNSSLKPVVLYGGVA 568

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           V  +   L+ G H++V TPGRL D I+   +N  +LK ++LDEAD+M+D+GF   IE I+
Sbjct: 569 VAHQADRLRMGCHLLVATPGRLEDFIKRGKVNFQNLKYLILDEADKMIDMGFGPQIEHII 628

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + S    + +    MFSAT    I  LA  +  D + + +       +D+    + V+ +
Sbjct: 629 EFSGMPPKGIRNTLMFSATFPDQIQHLAAQFLNDYLFLTVGRVGGTCTDVTQSVIQVSGT 688

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   + N+L+  G+   +VF   +         L++  F   +L+ + +Q+ER +AL+ 
Sbjct: 689 KKRETLENLLQTSGSDRTLVFVEKKRDADFLANFLSQKNFPATSLNADRTQEERESALKD 748

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G A + +AT VAARG+D+ D++ VI+ +L  +    +HR GRTGR G KG +     
Sbjct: 749 FRNGIAPILVATAVAARGLDINDVKHVINYDLPKDANEYVHRIGRTGRIGNKGKATSFFD 808

Query: 350 QN----MQRRAERLFREANVSVV 368
            +    + R   +L  +A   V 
Sbjct: 809 LDRDGSLARSLVKLLSDAEQDVP 831


>gi|212633620|ref|YP_002310145.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
 gi|212555104|gb|ACJ27558.1| ATP-dependent RNA helicase DbpA [Shewanella piezotolerans WP3]
          Length = 458

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 197/369 (53%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+  G+ ++T +Q   L   L  +DV+  A+TGSGKT AFGL L   L  + 
Sbjct: 8   LKTELLDNLTTMGFESMTPIQAQSLPAILNGEDVIGQAKTGSGKTAAFGLGLLHKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 68  FRI------QSLVMCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++  +  +VLDEAD MLD+GF+ ++E I++  P +R+ L+F
Sbjct: 122 HIIVGTPGRIIDHLDRGRLHLDDVHTLVLDEADRMLDMGFQVELEAIVEQVPVERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A +     V V +AS +   +   +   +   +DR  A+  +L  H  +
Sbjct: 182 SATFPEQIKSIADSIMFKPVLVKVASTHETSTIDQHFYEVGNNNDRMRALKLLLLQHRPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         L    F VVAL G+L Q++R   L    +    + +ATDVAA
Sbjct: 242 SAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ VI+  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 302 RGLDIDALDAVINYHIAFDTEVHIHRIGRTGRAGSKGAAHTFYSDEDGYKVALLEDYLER 361

Query: 366 SVVWEPAPS 374
            ++ E  PS
Sbjct: 362 DIISEGLPS 370



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 22/70 (31%)

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
                      +  G KQK     ++  L    GI    +G I++    ++V ++     
Sbjct: 377 FPTQPSMITLQIDGGKKQKLRPGDILGALTGEDGIEGSEVGKIKITDYRSYVAINRKVAK 436

Query: 520 LLRRTVKLDK 529
                +   K
Sbjct: 437 RALHKIVNGK 446


>gi|119775874|ref|YP_928614.1| ATP-dependent RNA helicase SrmB [Shewanella amazonensis SB2B]
 gi|119768374|gb|ABM00945.1| superfamily II DNA and RNA helicase-like protein [Shewanella
           amazonensis SB2B]
          Length = 613

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  +   + E+L   G+   T++Q   +   + ++D+L  A TG+GKT +F L    
Sbjct: 2   LFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    R      P  L + PTRELA Q+ R    L     + + +  GGV    +   
Sbjct: 62  HLIDFPRR--RPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEM 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++   I+V TPGRL +++     +   ++ +V+DEAD MLD+GF + ++ I   +  ++
Sbjct: 120 LKSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRK 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           + ++FSAT+             +      +   R      ++ +        +   + ++
Sbjct: 180 QAMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    K AIVFC TR  V+     L +       + G++ Q++R  AL     G   V 
Sbjct: 240 LKQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ ++  +  R   +
Sbjct: 300 LATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGK 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           + R     +       +E +R +  +
Sbjct: 360 VERYIEQPLKRRV---IEELRPKHKE 382


>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
          Length = 758

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 195/381 (51%), Gaps = 13/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   + +   E + +  Y   T VQ+  +   +  +D++  AQTGSGKT AF L +
Sbjct: 309 IKNFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLPV 368

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++        FS    P AL +APTRELAVQ+  +       T +   V  GG SV 
Sbjct: 369 LTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAHGTMLRAVVLYGGTSVG 428

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R ++ G HI+VGTPGRL D I    +++S LK ++LDEAD MLD+GF  DI  +++ 
Sbjct: 429 YQLRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLVEE 488

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                +      MFSAT    I  +A ++  D + + +       +D+      V   ++
Sbjct: 489 LGTPPKTERQTLMFSATFPEEIQKMAGDFLNDYLFLTVGRVGGACTDVTQTVYEVDRQEK 548

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + + +IL   G++  +VF   + +       L+++ F   ++ G+  Q ER  AL+  +
Sbjct: 549 RSRLCDILTETGSEKTLVFVEQKRNADFLASYLSQNGFPTTSIHGDRLQAEREEALRDFK 608

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+A V IAT VAARG+D+P ++ VI+ +L  + +  +HR GRTGR G  G ++     +
Sbjct: 609 LGKAPVLIATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKAISFYSND 668

Query: 352 ----MQRRAERLFREANVSVV 368
               + +   R+  +A   V 
Sbjct: 669 TDGALAKPLVRILSDAMQEVP 689


>gi|5679690|emb|CAB51742.1| RNA helicase-1 [Plasmodium falciparum]
          Length = 386

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 186/381 (48%), Gaps = 17/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I + L ++     T +Q   L   L  +D++  A TGSGKT+ F L L  
Sbjct: 1   MK----FPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIM 56

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGV 112
             L    R        P+ L I P+RELA Q    +++                  IGG+
Sbjct: 57  KCLEAEIRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGI 116

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S + + R++Q G H++V TPGRL D +  K + +   + +  DEAD ++DLGF +++   
Sbjct: 117 SAYEQGREIQKGIHMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNT 176

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           LD    +R+ L+FSAT+   I   AK+   + + +N+      + D+      V    + 
Sbjct: 177 LDHFSNQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKL 236

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           + ++ +L+  G    ++FC  +  V    + L       VA+ G L Q ER  A+ + R+
Sbjct: 237 SYLLEVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFRE 295

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++   I +N 
Sbjct: 296 GKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQ 355

Query: 353 QR----RAERLFREANVSVVW 369
           +       + L  EA   +  
Sbjct: 356 EEAILLDLKALLIEAKQKIPP 376


>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 783

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 125/451 (27%), Positives = 211/451 (46%), Gaps = 11/451 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 153 NLSRPLLRACEVLGYTKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFR 212

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQV   +E L   T +   + +GG+S   +   L++  
Sbjct: 213 PKRVQ---AIRVLILTPTRELAVQVHSMVEKLAQFTDIRCCLIVGGLSTKVQESALRSMP 269

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L+LGF  +I  ++   PK+R+ ++
Sbjct: 270 DIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKRRQTML 329

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L K      +R++     ++ + +    V +      N     + +   
Sbjct: 330 FSATMTEEINELIKLSLTKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSK 389

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  R   +     F+   L G L+Q +R +AL++ R  +    IAT
Sbjct: 390 TFTSRVIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIAT 449

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+        + +HR GRT RAGR+G +V  +    +   + + +
Sbjct: 450 DVAARGLDIIGVQTVINYACPRELTSYVHRVGRTARAGREGYAVTFVTDTDRSLLKAIAK 509

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A   +        E    + +Q I Q    + +I  +E++ + +  A+ +  K  A  +
Sbjct: 510 RAGSKLKSRIV--AEQSIAKWSQIIEQMEDQVAAILQEEREEIAIRKAEMEATK--AENM 565

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
             HR  + +  + T       +      S+A
Sbjct: 566 IAHRDDILSRPKRTWFVTEKEKKLVDKASKA 596


>gi|156083170|ref|XP_001609069.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796319|gb|EDO05501.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 433

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/374 (30%), Positives = 194/374 (51%), Gaps = 12/374 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++     + +A    G+   T +Q A +   L  +DV+  A TGSGKT AF + + 
Sbjct: 43  TTFQSLGVCPELCKACQSMGWQAPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVL 102

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +  R         + +AP+REL  Q+  +   L +   + V V IGGV +  +  
Sbjct: 103 HHLLEDVQRI------YCVVLAPSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQAS 156

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V +PGRL DH+      ++S +K +V+DEAD +L   F ++++ I+ + P 
Sbjct: 157 ALAKRPHVIVASPGRLADHVENTKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPT 216

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSAT++  ++ L K   KD + V +  +     ++D R +LV    +   +  +
Sbjct: 217 ERQTFLFSATMTKKLSKLQKMALKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAAL 276

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLA---EHLFQVVALSGELSQQERSNALQMMRDGRA 295
           L Y+  + AIVFC T     R    L          V L G+++Q +RS ALQ+ + G  
Sbjct: 277 LWYYATRTAIVFCKTCDGAQRCAAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSV 336

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT+V  RG+DLP +ELVI+ ++    ++ +HR GRT RAGR G+++ V+ Q     
Sbjct: 337 NILVATEVGGRGLDLPMVELVINFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVEL 396

Query: 356 AERLFREANVSVVW 369
            +R+    N  +  
Sbjct: 397 FQRIELALNKKLEE 410


>gi|92117844|ref|YP_577573.1| DEAD/DEAH box helicase-like [Nitrobacter hamburgensis X14]
 gi|91800738|gb|ABE63113.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
          Length = 487

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 191/374 (51%), Gaps = 6/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY   T +Q+  +   L  +DVL  AQTG+GKT AF L + + L    
Sbjct: 8   LSDKVLAAVAAAGYTAPTPIQDQAIPHVLAHRDVLGIAQTGTGKTAAFVLPMLTLLEKGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV    +       + VA+ IGGVS   +   L  G  
Sbjct: 68  AR---ARMPRTLILEPTRELAAQVKESFDKYGVGQKLNVALLIGGVSFGDQDMKLTRGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH    GL ++ ++ +V+DEAD MLD+GF  DIE I    P  R+ L F+
Sbjct: 125 VLIATPGRLLDHTERGGLLLTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFT 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT+   I  +   +  +  ++ ++      + +    V       +   +       AK 
Sbjct: 185 ATMPNEIRRVTDAFLHNPEKIEVSRPATAAATVAQSQVSCGREAHEKRELLRRLLRDAKD 244

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             NAI+FC+ +  V+   K L +H F V AL G++ Q  R+ +L   R G   + +A+DV
Sbjct: 245 LKNAIIFCNRKRDVAIVYKSLQKHGFSVGALHGDMDQSARTASLDQFRKGELPLLVASDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P++  V++ ++  +P++ +HR GRTGRAGR G ++ ++     +    + +  
Sbjct: 305 AARGLDIPEVSHVLNFDVPHHPDDYVHRIGRTGRAGRTGTAITIVCSADFKSVAAIEKLT 364

Query: 364 NVSVVWEPAPSVEA 377
             ++     P  +A
Sbjct: 365 GQAIPKADLPGYDA 378


>gi|326430321|gb|EGD75891.1| DEAD box polypeptide 41 [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/400 (27%), Positives = 185/400 (46%), Gaps = 22/400 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P  + + L  +G    T +Q   L   L  +D++  A TGSGKT+ F L    
Sbjct: 187 MK----LPTCLVDYLDSQGIKTPTPIQMQGLPVALSGRDMIGIAFTGSGKTLCFSLPAIM 242

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGV 112
             + +  +  F     P A  + P+RELA Q    ++             + + +C+GGV
Sbjct: 243 LTMEQEIKMPFQRGEGPYACVLCPSRELARQTFDAVKEYAGVLHKGGMPKLNIVLCMGGV 302

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            +  +  +  N  HI V TPGRL D +  K    +  +   +DEAD M+DLGF +DI  I
Sbjct: 303 DMREQLYECHNIVHIAVCTPGRLIDMLTKKKFTFNVCRYFCMDEADRMVDLGFEEDIRTI 362

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ ++FSAT+   I   A++   D + VN+        D+      V    + 
Sbjct: 363 FSFFNGQRQTVLFSATMPTKIRDFAQSALVDPITVNVGRAGAASLDVVQEVEHVRPEAKI 422

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+       I F   +A V    + L     Q VA+ G   Q+ER  A++  + 
Sbjct: 423 VYLLECLQKTPPPVMI-FSEKKADVDDIHEYLLLKGVQAVAIHGGKDQEERDMAVKAFKK 481

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATD+A++G+D   ++ VI+ ++    EN +HR GRTGR+GR G++   I   +
Sbjct: 482 GQKDVLVATDIASKGLDFKGIQHVINFDMPDELENYVHRIGRTGRSGRTGLATTFINDEV 541

Query: 353 QR----RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
                   + L +EA   V     P ++ +R    ++ L+
Sbjct: 542 PEISLLDLKYLLKEAKQRVP----PFLQNLRSEH-EKFLE 576


>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
 gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
          Length = 405

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/353 (30%), Positives = 182/353 (51%), Gaps = 7/353 (1%)

Query: 25  SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84
            +QE  +   L  +D++  AQTG+GKT A+ L + + L   ++   PA A   + +APTR
Sbjct: 3   PIQEKSIPVILEGRDLIAVAQTGTGKTAAYLLPILNKL---SEGGHPADAINCIVMAPTR 59

Query: 85  ELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           ELA Q+ +++E       V      GG       +++R L  GA +V+ TPGRL  H+  
Sbjct: 60  ELAQQIDQQMEGFSYFMPVSSVAVYGGNDGVLFEQQKRGLTLGADVVIATPGRLIAHLSL 119

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++S +   +LDEAD MLD+GF DDI  I+   PK+R+ +MFSAT+   I  LA N  
Sbjct: 120 GYVDLSRVSYFILDEADRMLDMGFYDDIMQIVKFLPKERQTIMFSATMPAKIQQLAGNIL 179

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            +   V   + ++    I   A +   + +   I ++      +  I+F S++  V   T
Sbjct: 180 NNPAEV-KLAVSKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKEVT 238

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K L +    V  +  +L Q +R   +   + GR  + +ATD+ ARGID+ D+ LVI+ ++
Sbjct: 239 KALKQMKLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDV 298

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
             + E+ +HR GRT RA   G+++  + +  Q   + + +  +  +   P P 
Sbjct: 299 PHDSEDYVHRIGRTARANNDGVAITFVSEKEQGNFKNIEKFLDRDIYKIPVPE 351


>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
 gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
           Ellin428]
          Length = 405

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 116/376 (30%), Positives = 185/376 (49%), Gaps = 9/376 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   +   +   GY++ T +Q       L  +D++ SAQTG+GKT AF L L +
Sbjct: 2   SFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L +  D         AL + PTRELA QV            V V +  GGV    +R  
Sbjct: 62  KLKSHGD-------LRALILEPTRELAAQVETAFRDYSRFMDVQVGLVHGGVGFGSQRSM 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ GA ++V TPGRL D +     N+ +++ +VLDE D MLD+GF   +  I+D  PK+R
Sbjct: 115 LQKGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRMLDMGFLPQVRRIVDRVPKER 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L FSAT+ P + T+ K   KD  +V I +       + +    VA   + + ++ +L 
Sbjct: 175 QTLFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFDLLIALLE 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +AI+F ST+    +    L +    V  L    +Q+ER +AL   + G+  V +A
Sbjct: 235 RTKFDSAIIFTSTKIMADKVAHRLKDLKHSVAVLHSNRTQREREDALAGFKSGKYEVMVA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+ ++  +PE+ +HR GRTGRA   G +  +           + 
Sbjct: 295 TDIAARGLDIAGVSHVINYDVPQHPEDYVHRIGRTGRALLTGDAFTIFTAEELDHVRSIE 354

Query: 361 REANVSVVWEPAPSVE 376
           R     +  +     +
Sbjct: 355 RFIGAKITRQKLEGFD 370


>gi|24372534|ref|NP_716576.1| ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
 gi|24346546|gb|AAN54021.1|AE015540_1 ATP-dependent RNA helicase SrmB [Shewanella oneidensis MR-1]
          Length = 420

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 187/385 (48%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    R+S  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRYSGQA--RVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +          +          R+     ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEDVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R +  +
Sbjct: 361 ERYIEQPLKRRI---IEELRPKHKE 382


>gi|260771800|ref|ZP_05880718.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
 gi|260613092|gb|EEX38293.1| ATP-dependent RNA helicase SrmB [Vibrio metschnikovii CIP 69.14]
          Length = 411

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/357 (29%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           A+ E G+   T VQE  +   L  +D+L SA TG+GKT AF +     L  +  R  P  
Sbjct: 17  AIKELGFERPTQVQEEAIPHALDGRDILASAPTGTGKTAAFVIPALQYL-QDFPRKKPGP 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           A + L + PTRELA+Q+  +   L   T + +    GGV        L     IVV TPG
Sbjct: 76  ARM-LILTPTRELAMQITEQARQLAKHTRLNIFTITGGVQYQEHADILATTQDIVVATPG 134

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT-ISPA 192
           RL ++I  +  +   ++ ++LDEAD MLD+GF   ++ +      +++ L+FSAT     
Sbjct: 135 RLLEYINAERFDCRAIEWLILDEADRMLDMGFGPVVDRLAAECRWRKQTLLFSATLEGRG 194

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +     +   +   +      R+   I               ++ ++    A+ +IVF  
Sbjct: 195 VEGFTADLLNNPAEITAEPPRRERKKIAQWYHRADSMKHKLELLKVILTQQAERSIVFIK 254

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           TR  ++     L         + GE+ Q  R+NA+   R+G   + +ATDVAARGID+PD
Sbjct: 255 TRERLAELRGELERAQIPCAWIQGEMPQDRRNNAISRFREGDINILLATDVAARGIDIPD 314

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  VI+ ++  + +  LHR GRT RAG+KG ++ ++  + Q   +R+ R     +  
Sbjct: 315 VSHVINFDMPRSADVYLHRIGRTARAGKKGNAISLVEAHDQMMMDRVARYVKEEIKE 371


>gi|68478729|ref|XP_716633.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|74656359|sp|Q5A4E2|DED1_CANAL RecName: Full=ATP-dependent RNA helicase DED1
 gi|46438305|gb|EAK97638.1| hypothetical protein CaO19.7392 [Candida albicans SC5314]
 gi|238881007|gb|EEQ44645.1| ATP-dependent RNA helicase ded1 [Candida albicans WO-1]
          Length = 672

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S    + 
Sbjct: 193 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 252

Query: 67  DRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P  L +APTREL  Q+  E +    ++ V   V  GG  + ++
Sbjct: 253 PAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQ 312

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    +++++++ +VLDEAD MLD+GF   I +      
Sbjct: 313 MRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECD 372

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             + K R+ LMFSAT    I  LA+++ KD V +++        +I  + + V   ++ +
Sbjct: 373 MPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDDEKKS 432

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+++L  +     IVF  T+         L +  F   A+ G+ SQ ER  AL   ++G
Sbjct: 433 VILDLLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNG 492

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 493 AAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 552

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 553 NVVKGLIELLSEANQEVP 570


>gi|313205893|ref|YP_004045070.1| dead/deah box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|312445209|gb|ADQ81564.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer DSM
           15868]
 gi|315022205|gb|EFT35233.1| ATP-dependent RNA helicase [Riemerella anatipestifer RA-YM]
 gi|325336667|gb|ADZ12941.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
           RA-GD]
          Length = 449

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/396 (26%), Positives = 186/396 (46%), Gaps = 9/396 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P+ I + L++      T +Q+    P L  +D++  AQTG+GKT+A+ L +     
Sbjct: 8   FE-LPEKILDILADLELFEPTPIQQKSFKPILSGRDIMGIAQTGTGKTLAYLLPVL---- 62

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +N +++ +  P  L + PTREL VQV   LE L  K    +    GG +++ ++    N
Sbjct: 63  -KNWKYNKSGNPTVLVLVPTRELVVQVAEILEKLCEKLSTRIIGVYGGKNINTQKLLFDN 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ D      +++  ++ +++DE DEML+LGFR  +  I +   +KR+ +
Sbjct: 122 GCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMREKRQNI 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAIVNILR 240
           +FSAT++ A+  +   Y  + + +++A        I                   +    
Sbjct: 182 LFSATMTDAVDEMLDEYFANPIEISLAKSGTPLEKIQQIAFKVTNFNTKINFLQHLLDKD 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              +K  I   + + +   FTK+   +      +    SQ  R  A++       R  I 
Sbjct: 242 KSMSKVLIFCNNKKHADYLFTKIDEIYPESFDVIHSNKSQNYRLRAMKKFEQEEVRGLIT 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+ D+  VI+ E+   PE  +HR GRTGRA + G+++  I +  +     + 
Sbjct: 302 TDVMARGLDISDISHVINFEIPDIPEQYIHRIGRTGRADKDGIALSFITEKEEALFLDIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
                 V  +P P    I  +      ++    + +
Sbjct: 362 ILMKKEVEVQPMPEEVKINPQKIASEKEEVKMKNPV 397


>gi|171059208|ref|YP_001791557.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170776653|gb|ACB34792.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 502

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 191/388 (49%), Gaps = 11/388 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + I ++++  GY   T VQ   + P L+  D+ V + TGSGKT AF L    
Sbjct: 2   TFDTLGLHEAILKSVTAAGYDTPTDVQAQTIPPALQGLDLRVCSNTGSGKTAAFVLPALQ 61

Query: 61  TLLAENDRFSPAS------APLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVS 113
            +LA  +  S A        P  L +APTRELA+QV +          G+ VA  +GGV 
Sbjct: 62  RVLAARNDPSKARAKGQVCGPRVLVLAPTRELAMQVSKAASTYGQHVAGLRVATIVGGVP 121

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              +   L+    I++ TPGRL DH+      +  ++ ++LDEAD MLD+GF +DIE I 
Sbjct: 122 YPAQLAALRKPLDILIATPGRLIDHLNSGKAVLGDVEMLILDEADRMLDMGFIEDIERIA 181

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDR 231
           +S P++R+ +M SAT +  +  LA    K   +    + +  + +          ++  +
Sbjct: 182 ESLPQERQTVMVSATFAGQVGRLADQILKSDAKRIEITSHTDNHENIEQQLLWADSIEHK 241

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + ++L     + A+VF ST+         L E    V  L G + Q  RS  L  +R
Sbjct: 242 AKLLEHLLTEREMQQALVFTSTQRDADELAAHLYELGHAVAPLHGGMPQGRRSRTLMALR 301

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V IATDVAARGID+P +  VI+  L    E+ +HR GRTGRAGR G ++ +  + 
Sbjct: 302 NGEIKVLIATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRTGRAITLAERR 361

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIR 379
                 R+ +    ++       +E  R
Sbjct: 362 DVGMIRRIQQFTTQTIPVTVIAGLEPTR 389


>gi|157130314|ref|XP_001661885.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108871945|gb|EAT36170.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 619

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 183/381 (48%), Gaps = 17/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I  AL +R     + +Q   +   L  +D++  A TGSGKT+ F L +  
Sbjct: 185 MK----FPKAILAALEKRNIRKPSPIQVQGIPAVLSGRDLIGIAFTGSGKTLVFVLPIVM 240

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGV 112
             L +  R  F     P  L I P+RELA Q    +++      +        A+ IGGV
Sbjct: 241 FSLEQELRLPFISKEGPYGLIICPSRELAKQTHDIIQYYCQHLQMSGMPEIRSALAIGGV 300

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V+     +Q G HI+V TPGRL D +  K L +   + + +DEAD M+D GF +DI  I
Sbjct: 301 PVNDALATIQQGCHIMVATPGRLMDMLDKKLLKLDVCRYLCMDEADRMIDAGFEEDIRTI 360

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   AK+     V +N+        ++      V    + 
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKV 420

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +++ L+       ++F   +  V    + L     + VA+ G   Q+ER  +++  R+
Sbjct: 421 VYLLDCLQKTPPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERYRSVEGFRN 479

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G KG++   I +  
Sbjct: 480 QEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKAT 539

Query: 353 QR----RAERLFREANVSVVW 369
           ++      + L  EA   V  
Sbjct: 540 EQFVLLDLKHLLIEAKQKVPP 560


>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
          Length = 478

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 130/408 (31%), Positives = 212/408 (51%), Gaps = 14/408 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + EA     Y   T +QE  +   L+++D++  A+TGSGKT AF L + 
Sbjct: 57  KTFKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPIL 116

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P      L +APTRELA Q+G+  E L +   +  AV +GG+ +  +  
Sbjct: 117 QALL---DKPQPLFG---LVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAV 170

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH  + KG ++  LK +V+DEAD +LD+ F   I+ +L   P+
Sbjct: 171 ALGKKPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPR 230

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D VRV+++S   Q         ++V    +D  ++ 
Sbjct: 231 ERRTYLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIY 290

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     K+ IVF  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 291 LVNEFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q      +
Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQ 410

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEK 401
           R+       +   P    E +    R  +AQR  +  +   S + D +
Sbjct: 411 RIEAALGKKLDIYPTEKEEVLAFQHRVEEAQREARIEMKSLSEKKDRR 458


>gi|322388235|ref|ZP_08061839.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
 gi|321140907|gb|EFX36408.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           infantis ATCC 700779]
          Length = 447

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 115/459 (25%), Positives = 200/459 (43%), Gaps = 25/459 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +   L  E+
Sbjct: 8   FKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEES 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQN 123
           D      +  A+  AP+RELA Q+ +    + + + V + V           +  +   N
Sbjct: 68  D------SVQAVITAPSRELATQIYQAARQIASHSDVEIRVVNYVGGTDKARQIDKLASN 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  + +
Sbjct: 122 QPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFM 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +   
Sbjct: 182 VFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELTQVMQ 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+         L     +V  + G+++ +ER   +  +++      +ATD+
Sbjct: 242 PYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDL 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L +  
Sbjct: 302 AARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELEK-- 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + + + P             ++++D  F D+   D +   +    K D E I     + 
Sbjct: 360 -LGIKFVP-------------KVVKDGEFQDTYDRDRRANREKKQEKLDIEMIGLVKKKK 405

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +      ++I        R   R +SRA          
Sbjct: 406 KKVKPGYKKKIQWAVDEKRRKTKRAESRARGRAERKAKR 444


>gi|261332727|emb|CBH15722.1| ATP-dependent DEAD/H RNA helicase HEL64,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 568

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 182/368 (49%), Gaps = 7/368 (1%)

Query: 1   MKIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+++    P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +
Sbjct: 99  MSSFDHLRGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV 158

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              + +  +         P+ + +APTRELA Q+  E + +            GG     
Sbjct: 159 PALAHIAVQEP-LRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVY-CGCVYGGAPKGP 216

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I    
Sbjct: 217 QLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI 276

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAI 235
              R+ +MFSAT    I  LA  +QK  +R+++ S   + + D+  R +L     + + +
Sbjct: 277 RPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDEL 336

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +++ H  +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R    
Sbjct: 337 RKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPR 396

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVAARG+D+  LE VI+ +     ++ +HR GRTGRAG KG +  +I +   + 
Sbjct: 397 LCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGAKGDAFTLITKKEAQI 456

Query: 356 AERLFREA 363
              + +E 
Sbjct: 457 TPSVLKEL 464


>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 419

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 195/376 (51%), Gaps = 6/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + Q +   LSE GY + T +Q   +   L  +D++  AQTG+GKT AF L +   L    
Sbjct: 8   LSQKLITLLSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPILQKLSECD 67

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             L++  +        AL + PTRELA+QV +        +G+  A+  GGVS+  +   
Sbjct: 68  VELSDTKQTVSLKPVRALVLTPTRELALQVNQSFAKYGKDSGLNTAIVYGGVSIDAQADA 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL DH+R   L +  L  +V DEAD MLD+GF+D+I  IL   P KR
Sbjct: 128 LKAGVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEADRMLDMGFKDEINAILKQVPSKR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT  P++  L+K  Q+D   + +   N   + ++     V    +   I ++++
Sbjct: 188 QTLLFSATFDPSVFALSKRLQQDPKLIEVDKRNTLAAKVEQVVYAVDADRKSELICHLVK 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  ++F   +         + +   +  A  G+LSQ  R  ALQ  + G  +V +A
Sbjct: 248 SKLWQQVLIFSRKKQGADNIAAKMVKAGIKAQAFHGDLSQAVREKALQQFKQGEIQVLVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L++V++ EL    E+ +HR GRTGRAG  G+++ +  +      E + 
Sbjct: 308 TDVAARGLDVEELKVVVNYELPFIAEDYIHRIGRTGRAGNAGLAITLYSEEDALLLEEIE 367

Query: 361 REANVSVVWEPAPSVE 376
              +  +  +  P  E
Sbjct: 368 ALLDSRLPQQWLPGFE 383


>gi|15603705|ref|NP_246779.1| ATP-dependent RNA helicase SrmB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12722265|gb|AAK03924.1| SrmB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 442

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 184/377 (48%), Gaps = 8/377 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   T++Q+  +   + ++DVL SA TG+GKT AF L     LL    R     AP  L
Sbjct: 23  GYTRPTAIQQETIPAAMEQRDVLGSAPTGTGKTAAFLLPAIQHLLDYPRR--KPGAPRIL 80

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  + E     T + +A   GGV+         +   IVV TPGRL  +
Sbjct: 81  ILTPTRELAMQVAEQAESFAEFTNLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLLQY 140

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ +  +   ++ ++ DEAD ML +GF  D E I   +  +++ L+FSAT+   +     
Sbjct: 141 IKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETRWRKQTLLFSATLEGELLVDFA 200

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +          A  +R+      +      +   +   +   +        IVF   R  
Sbjct: 201 SRLLTEPVQIDAEPSRRERKKIQQWYYHADSNEHKIKLLARFIDEEQVSRGIVFVRRREE 260

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   ++ L +   +   L GE++Q +R+NA+  +++G   V +ATDVAARGID+ D+  V
Sbjct: 261 VRELSETLRKRGIRSTYLEGEMAQTQRNNAIDKLKNGIVTVLVATDVAARGIDIEDVSHV 320

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE----ANVSVVWEPA 372
           ++ +L  + +  LHR GRT RAG+KG++V  +  +  +   ++ R         ++   A
Sbjct: 321 MNFDLPYSADTYLHRIGRTARAGKKGVAVSFVEAHDYKLLGKIKRYTQELLKARIIEGLA 380

Query: 373 PSVEAIRERDAQRILQD 389
           P  +A +E + + + + 
Sbjct: 381 PRTKAPKEGEVKTVSKK 397


>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
          Length = 802

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 119/426 (27%), Positives = 195/426 (45%), Gaps = 24/426 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 200 NLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFR 259

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA  V   +E L   T +   + +GG+S   +   L++  
Sbjct: 260 PKRVP---AIRVLILTPTRELAAPVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 316

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  ++LDEAD +L+LGF  +I+ ++   P++R+ ++
Sbjct: 317 DIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQELIRMCPRRRQTML 376

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L        VR+      ++ + +    V +  +   N     + +   
Sbjct: 377 FSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVVRIRRAREANQEAVLLALCLK 436

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ S  R   +      +   L G L+Q +R  AL++ +       IAT
Sbjct: 437 TFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDFLIAT 496

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+     +    LHR GRT RAGR+G +V  +  + +   + + +
Sbjct: 497 DVAARGIDIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 556

Query: 362 EANVSV---------VWEPAPSVEA--------IRERDAQRILQDPLFLDSIQGDEKKMV 404
           +A   +         V E A  +E         I+E   +RIL+      +   +     
Sbjct: 557 KAGSQLKSRIVAEKPVAECAKLIEELEDQISTIIQEEREERILRKAEMEATKAENMIAHK 616

Query: 405 DVLLAK 410
           D + ++
Sbjct: 617 DEIYSR 622


>gi|307261010|ref|ZP_07542692.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869312|gb|EFN01107.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 406

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/343 (32%), Positives = 185/343 (53%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L   D+   AQTG+GKT+AF +A+   LL  N
Sbjct: 15  IHENVLAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTLAFLIAVFHYLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DSATNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQIQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +   ++
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LA     +A  V I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSPRVRELAYEDMDNAQYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 DRCMIFANTKHKCEEIWGYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+  
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDCEDYIHRIGRTGRAGESGHSISF 356


>gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
 gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
           JJ]
          Length = 498

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 117/370 (31%), Positives = 177/370 (47%), Gaps = 4/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   ++  GY   T +Q   +      +D++  AQTG+GKT AF L +   L+   
Sbjct: 28  LHPTICANIARIGYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPIIHRLMTTK 87

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ R    L   T +  AV  GGV +  + R L+ G  
Sbjct: 88  PE---KRGVRALILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALRQGLD 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV  PGRL DH+    +    L+ +VLDEAD M D+GF  D+  IL + P+KR+ L+FS
Sbjct: 145 IVVACPGRLLDHMNQGNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQTLLFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  LA     D V V         + +++    V+ + +   ++++L     ++
Sbjct: 205 ATMPAAIAGLAGETLTDPVTV-RIGHLAPAATVEHAIYPVSSAQKTPLLLHLLGEAAKES 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+       + L     +   L G LSQ++R  A+   R G  +V +ATD+AAR
Sbjct: 264 VIVFTRTKHRAKNLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLVATDIAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ ++   PE   HR GRTGRA R G +   +          + R     
Sbjct: 324 GIDVSQVAHVVNYDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDMSMVRAIERHMKKP 383

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 384 LPRRSVEGFE 393


>gi|194898941|ref|XP_001979021.1| GG10666 [Drosophila erecta]
 gi|190650724|gb|EDV47979.1| GG10666 [Drosophila erecta]
          Length = 720

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 288 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 347

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 348 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 406

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 407 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 466

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 467 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 526

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 527 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 586

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 646

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 647 DVLREANQEI 656


>gi|153834391|ref|ZP_01987058.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
 gi|148869239|gb|EDL68261.1| ATP-independent RNA helicase DbpA [Vibrio harveyi HY01]
          Length = 459

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 219/408 (53%), Gaps = 15/408 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   + E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I+D++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   Y   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F VV L G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +    ++ VV    P+      +  Q+  Q  +   +I G +K+ V  
Sbjct: 358 IEEYLDMDVVPATLPA------KSTQQPYQAKMVTINIDGGKKQKVRA 399



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               ++  G KQK  A  ++  L   +GI    +G I++    ++V V         +T+
Sbjct: 384 MVTINIDGGKKQKVRAGDILGCLTGKNGITGAQVGKIQLMAMRSYVAVEKSVAKKALQTI 443

Query: 526 KLDK 529
              K
Sbjct: 444 SNGK 447


>gi|209877961|ref|XP_002140422.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556028|gb|EEA06073.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 442

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 190/376 (50%), Gaps = 14/376 (3%)

Query: 2   KIFENI-------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           K  ENI        + +  A    G++  T +Q   +   LR  D++  A+TGSGKT AF
Sbjct: 24  KTMENITFASLGVCKELCLACESLGWLKPTDIQREAIPIALRGGDIIGLAETGSGKTGAF 83

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L +  +LL    R        ++ +APTREL VQ+  +   L +   + VA  +GG+ +
Sbjct: 84  ILPILQSLLENQSRM------YSVVLAPTRELCVQISEQFSALGSLISLQVANIVGGMDM 137

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +   L    HI+V +PGRL DH+      NIS +K +V+DEAD +L + F   +  I+
Sbjct: 138 VNQALSLAKKPHIIVASPGRLVDHLENTKGFNISSVKYLVMDEADRLLSMDFEIALTKII 197

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           ++ PK R   +FSAT++  +  L +   K+ V++ + ++     ++    + +    + +
Sbjct: 198 EACPKNRNTYLFSATMTTKVAKLQRVSLKNPVKICVNTKYDTAENLLQYYMFIPFKFKWS 257

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V +++       I+F +T  S  R   ++ +  F  V L G ++Q +R  AL   +  
Sbjct: 258 YLVILVQNLSQYTGIIFTNTCISCKRGALLMQQLGFSSVCLHGRMNQTQRLAALNQFKSK 317

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  +   T+V +RG+D+P ++ VI+ ++  + ++ +HR GRT RAGR G ++ ++ Q   
Sbjct: 318 QRHLLFTTEVGSRGLDIPHVDFVINFDIPMSSKDYVHRVGRTARAGRSGKAISLVTQYDV 377

Query: 354 RRAERLFREANVSVVW 369
              +R+    N  +  
Sbjct: 378 EMFQRVEFALNKKLDE 393


>gi|156973083|ref|YP_001443990.1| ATP-dependent RNA helicase DbpA [Vibrio harveyi ATCC BAA-1116]
 gi|156524677|gb|ABU69763.1| hypothetical protein VIBHAR_00762 [Vibrio harveyi ATCC BAA-1116]
          Length = 459

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 140/408 (34%), Positives = 218/408 (53%), Gaps = 15/408 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   + E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I+D++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIIDAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   Y   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F VV L G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQNVADELHHKGFSVVDLHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +     + VV    P+      +  Q+  Q  +   +I G +K+ V  
Sbjct: 358 IEEYLEMDVVPATLPA------KSTQQPYQAKMVTINIDGGKKQKVRA 399



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               ++  G KQK  A  ++  L   +GI    +G I++    ++V V         +T+
Sbjct: 384 MVTINIDGGKKQKVRAGDILGCLTGKNGITGAQVGKIQLMAMRSYVAVEKSLAKKALQTI 443

Query: 526 KLDK 529
              K
Sbjct: 444 SNGK 447


>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
 gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
          Length = 955

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L    
Sbjct: 242 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 301

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRER 118
            +  +         P+AL +APTRELA Q+   +                 GG S   + 
Sbjct: 302 HIGNQPPII-RGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 360

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 361 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 420

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V 
Sbjct: 421 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVR 480

Query: 238 ILRYHGAKN--------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +L                I+F  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 481 LLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 540

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 541 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 600

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 601 PDNAKQARELISVLEEAGQT 620


>gi|315125225|ref|YP_004067228.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
 gi|315013738|gb|ADT67076.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas sp. SM9913]
          Length = 466

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 203/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY  +T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 15  LPSGLVDNLSTLGYTQMTPVQAQSLPPVLSGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 75  FRI------QSLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P  R+ L+F
Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPTNRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   +I  +AK    +   + +  +  + +   Y   +     R   +  +L     +
Sbjct: 189 SATFPKSIEAIAKRVLSNPEMIKVEEQQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ +P+  +HR GRTGRAG+KG++  +     Q +  ++      
Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368

Query: 366 SVVWEPAPS 374
               EP PS
Sbjct: 369 DFTPEPMPS 377



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----S 514
                       +  G KQK  A  ++  L    GI  + +G I V  ++ FV V    S
Sbjct: 383 KPPYKPEMVTLMIDAGKKQKVRAGDILGALTGKDGIAGRQVGKINVLDNVAFVAVERNSS 442

Query: 515 ADGVDLLRRTVKLDKGIQLKYL 536
              +  L       + I+ + L
Sbjct: 443 KPALRKLTEGNIKGRKIRARRL 464


>gi|294947712|ref|XP_002785456.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
 gi|239899367|gb|EER17252.1| ATP-dependent RNA helicase ded-1, putative [Perkinsus marinus ATCC
           50983]
          Length = 695

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 180/376 (47%), Gaps = 17/376 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E +   G+   T VQ+  +      +D++  AQTGSGKT A+ +     +LA+    +
Sbjct: 218 IVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPDA 277

Query: 71  PASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L+
Sbjct: 278 TSSGDYGRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGGADVRTQLRELE 337

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++        
Sbjct: 338 RGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSR 397

Query: 183 L-----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT    I  LA+++ KD + + +      H  I      V  + +   +  
Sbjct: 398 DGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYR 457

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G   
Sbjct: 458 VLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELP 517

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           + +ATDVAARG+D+  + LVI+ +L +N ++ +HR GRTGRAG  G ++  + +  +   
Sbjct: 518 ILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGRTGRAGNLGTAIAFVNEGSKPIL 577

Query: 354 RRAERLFREANVSVVW 369
           R    L  E    +  
Sbjct: 578 RDLWTLLEENKQEIPQ 593


>gi|332520631|ref|ZP_08397093.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043984|gb|EGI80179.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 451

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 204/454 (44%), Gaps = 30/454 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL + GY   T +Q    N     KD++  AQTG+GKT A+ L +   L   
Sbjct: 7   NLNTPLYNALDDLGYTTPTPIQAEAFNVVASGKDMVGIAQTGTGKTFAYMLPVLRNL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              FS    P  L + PTREL VQV  E+E L       V    GG +++ +++ +  G 
Sbjct: 64  --PFSKQENPRVLVLVPTRELVVQVVEEIEKLSKYINNRVLGVYGGTNINTQKQAIAQGI 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + L +  ++ +++DE D MLDLGFR  +  I D  P +R+ +MF
Sbjct: 122 DILVATPGRLYDLALSRVLQLKSIQKLIIDEVDVMLDLGFRHQLINIFDLLPTRRQNIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYH 242
           SAT++  +  L  ++ K   +V+IA+      +I                   +      
Sbjct: 182 SATMTKDVDDLIVDFFKSPEKVSIATSGTPLENIKQTRYKAPNFYTKLNLLKHLLQDEET 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I     + +   F  +  E+  ++  +    +Q  R  +++  R+G  R+ +ATD
Sbjct: 242 YNKVLIFVAYKKMADRLFEALDEEYNEELCVIHSNKTQNYRLRSIEQFREGINRILVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ ++  VI+ +    PEN +HR GRTGRA R+G ++    +  Q+  E +   
Sbjct: 302 VMARGLDIDNVSHVINFDTPEYPENYMHRIGRTGRAEREGHALVFTTEKEQQAIEDIEAL 361

Query: 363 ANVSVVWEPAP-----SVEAIRERDAQ----------RILQD---PLFLDSIQGDEKKMV 404
            ++++  E  P     S E I E   Q          R  +D   P F +  + + K+ +
Sbjct: 362 MDMTINVEEIPDTVEISTELIEEERPQIKERNNPNKRRKDEDAPGPAFHEKSEKNSKENL 421

Query: 405 DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVS 438
                     KIAA + +    G     +     
Sbjct: 422 GGSYKF----KIAAKYKKPKTRGDKNYNKRNKRK 451


>gi|198476381|ref|XP_001357350.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
 gi|198137669|gb|EAL34419.2| GA17489 [Drosophila pseudoobscura pseudoobscura]
          Length = 578

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 177/356 (49%), Gaps = 6/356 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  +I   +++ GY   T +Q+  +      +D++  AQTGSGKT AF + +
Sbjct: 161 IKKFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLVPI 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG SV  + 
Sbjct: 221 LNLLLTDAVDLEIGK-PQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQN 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSS 176
             +  G H+++ TPGRL D +    +     + +V+DEAD MLD+GF + +  I    + 
Sbjct: 280 ESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTM 339

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + LMFSAT    I  +A  +  + + V I       SD+      V   ++    +
Sbjct: 340 RAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIYEVTKYNKRRK-L 398

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A   IVF  T+         L+E      ++ G+  Q +R  AL+  + G+ +
Sbjct: 399 IDILKESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           V IAT VA+RG+D+ +++ V++ ++    ++ +HR GRTGR G  G +      + 
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSFFDPDQ 514


>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12D]
 gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
          Length = 627

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 201/395 (50%), Gaps = 19/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 40  LDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQP 99

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P                    P  L + PTRELA+QV             +  A  
Sbjct: 100 EPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 159

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 160 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFSDD 219

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 220 IEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFTDD 279

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +S +   + ++LR    K AIVF +T+       + L EH F   AL G++ Q  R+  L
Sbjct: 280 MSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTL 339

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 340 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 399

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           +  N   +  R+ R  +  +       +E  R   
Sbjct: 400 VNHNDTFQWRRIERFVDRRIDASVVEGLEPKRSAK 434


>gi|255713704|ref|XP_002553134.1| KLTH0D09746p [Lachancea thermotolerans]
 gi|238934514|emb|CAR22696.1| KLTH0D09746p [Lachancea thermotolerans]
          Length = 621

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 191/379 (50%), Gaps = 16/379 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q++ + + +  +   T VQ+  +      +D++  AQTGSGKT  F   + S   A  
Sbjct: 156 LDQLLLDNIIKARFTKPTPVQKYSVPIIAARRDLMACAQTGSGKTGGFLFPVLSESFANG 215

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P  A         P A+ +APTRELA Q+  E +    ++ V   V  GG  +  +
Sbjct: 216 PAPVPEQASNFYIKKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPCVVYGGADIGSQ 275

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            ++L  G  ++V TPGRL D +    +++ ++K +VLDEAD MLD+GF   I        
Sbjct: 276 IKELNRGCDLLVATPGRLSDLLERGRISLCNIKYLVLDEADRMLDMGFEPQIRHIVEGCD 335

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S  +R+ LMFSAT    I  LA+++ KD V +++        +I    + V   D+ +
Sbjct: 336 MPSVDERQTLMFSATFPMDIQHLARDFLKDYVFLSVGRVGSTSENITQHVLYVEDMDKKS 395

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+      T  L     +  A+ G+ SQ ER  AL   R G
Sbjct: 396 ALLDLLAASDDGLTLIFVETKRMADALTDFLIMQNLRATAIHGDRSQSERERALAAFRSG 455

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
           +A + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++   +    +
Sbjct: 456 KASLLVATAVAARGLDIPNVTHVINYDLPNDIDDYVHRIGRTGRAGNTGVATAFLNRGNK 515

Query: 351 NMQRRAERLFREANVSVVW 369
           N+ +    L  EA   V  
Sbjct: 516 NVVKEMVDLLTEAKQEVPE 534


>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
 gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
           J2315]
          Length = 514

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/399 (33%), Positives = 197/399 (49%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L    T     
Sbjct: 43  LSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIETFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+D++P  R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 223 IEDIETIVDATPDTRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 403 VSLVHHAEQGALKRIERFVRSPL---PVNVIEGFEPRKA 438


>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
 gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
 gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
           SAW760]
          Length = 391

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 198/374 (52%), Gaps = 9/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   I   +  ++   G+   +++Q+  + P ++ ++++  AQ+G+GKT AF + +
Sbjct: 17  IQSFDAMGIKDELLRSIYSYGFEKPSAIQQRAIVPLMQGRNLIAQAQSGTGKTAAFSIGV 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       + +    A+ ++PTRELA+Q    ++ L     +    CIGG SV    
Sbjct: 77  LQQID------TNSKVCQAILLSPTRELALQTQEVVKNLSQYLDIKTFACIGGTSVRETI 130

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  +VVGTPGR+ D +  + ++ + +K ++LDEADEML  GF+D +  IL S P 
Sbjct: 131 EALRNGVQVVVGTPGRVLDMLDRQAIDPNTVKYLILDEADEMLSQGFKDQMYTILKSLPS 190

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++ MFSAT+      ++K + ++ V++ +  E      I      +V    + + +++
Sbjct: 191 TVQVGMFSATMPADALDISKKFMENPVKILVKKEELTLEGIKQFYIDVVKDEYKIDTLID 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      +++FC+++  V    + L  H + V    G+L+ +ER+N L   R G  R+
Sbjct: 251 LYQVISVNQSVIFCNSKNRVEWIQRRLQAHNYPVSITHGDLTMEERNNVLNEFRQGATRI 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ +RGID+  + LVI+ ++  + E+ +HR GR+ R GRKG+++  I         
Sbjct: 311 LITTDMLSRGIDVQQVSLVINFDMPVSDESYIHRIGRSARFGRKGVAIDFITTEEMDTIN 370

Query: 358 RLFREANVSVVWEP 371
           RL +     +V  P
Sbjct: 371 RLQKTYETKIVPLP 384


>gi|301789077|ref|XP_002929955.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like
           [Ailuropoda melanoleuca]
          Length = 590

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 184/377 (48%), Gaps = 11/377 (2%)

Query: 3   IFEN----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE+     P++I E++   G+   T +Q       L+  D++  AQTG+GKT+++ +  
Sbjct: 186 LFEDAFHPYPELI-ESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPG 244

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +       + P  L + PTRELA+QV  E    Y+  G+      GG +  ++ 
Sbjct: 245 FIHLNNQPISREERNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSICIFGGRNREQQI 303

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD+  G  I++ TPGRL        +N+  +  +VLDEAD+MLDLGF   I  IL     
Sbjct: 304 RDITKGIDIIIATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRP 363

Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ +M SAT             ++  +      +    + +    ++    ++ + +  
Sbjct: 364 DRQTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQE 423

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L+    ++  IVF   R      +  L+     V +L G+  Q +R  AL+  R G+ +
Sbjct: 424 FLQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVK 483

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
           V IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G+S+ ++ QN  +  
Sbjct: 484 VLIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIA 543

Query: 355 -RAERLFREANVSVVWE 370
               ++ + AN SV  +
Sbjct: 544 TELIKILKRANQSVPED 560


>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 532

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 132/397 (33%), Positives = 197/397 (49%), Gaps = 23/397 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY + T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSADVVSALTAAGYEHPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 103 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 162

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF D
Sbjct: 163 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFID 222

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DI+ I+  +P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I        
Sbjct: 223 DIDTIVAETPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVD 282

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 283 DRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 342

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 343 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGVAVS 402

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           ++    Q   +R+ R     +   P   VE    R A
Sbjct: 403 LVHHAEQGALKRIERFVRTPL---PVNVVEGFEPRKA 436


>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
          Length = 798

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 225/484 (46%), Gaps = 17/484 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I + L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 279 SLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTGAFLVPILERLLYR 338

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + + +       + +APTRELA+Q       L + T +   + +GG+S+  + ++L+   
Sbjct: 339 SKKVA---TTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLKVQEQELRLRP 395

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 396 DVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 455

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + S+ +  S++              R   +V+I + 
Sbjct: 456 FSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKRMGYLVHICKT 515

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +        +          L G ++Q +R  +++  RDG+    +AT
Sbjct: 516 LYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEAFRDGKVNFLLAT 575

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  ++ VI+ E   N E  +HR GRT RAGR G+++ +  +  ++  +   R
Sbjct: 576 DLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAAEPDRKVVKAAVR 635

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                       +   I   DA +      + D I   E ++ +++  + + +++    +
Sbjct: 636 AGKAQGAKI---TSRIIEASDADK------WQDQIDEMEGEIKEIMQEEKEEKQLQQVEM 686

Query: 422 RIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
           ++ +   +   EE             +DD RA K+ G    N         S G     +
Sbjct: 687 QVKKGENMIKYEEEIASRPKRTWFETQDDKRAAKLAGREELNGIREQLKKKSQGKLSNKD 746

Query: 481 ARWL 484
            + L
Sbjct: 747 KKKL 750


>gi|118374919|ref|XP_001020647.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89302414|gb|EAS00402.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 396

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 191/381 (50%), Gaps = 9/381 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +   G+   ++VQ+  + P ++ +DV+V +Q G+GKT  F +A 
Sbjct: 22  ITQFEKMGLKEELLRGILTYGFDKPSAVQQRAIKPIIKGRDVIVQSQAGTGKTGVFTIAA 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +            P  + ++PTRELA Q  +    L     ++V  CIGG S+  + 
Sbjct: 82  LQIVDKN------LREPQVIVLSPTRELAEQTQKVCLALGDYMNILVHCCIGGKSMDDDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  I+ GTPGR+ D I+ + L   ++K +VLDEAD+ML +GF++ +  I    P 
Sbjct: 136 NRLEKGVQIISGTPGRIYDMIQRRHLKTRNVKMLVLDEADQMLSMGFKEQVYDIYRYLPH 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           K + ++ SAT+   I  +   +  D ++  +  +      I    + +     +   + +
Sbjct: 196 KNQNVVVSATLPQEILEMTNKFMNDPIKFLVKRDELTLEGIKQFFILVEKEEWKFETLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T  +V   +  + E  F + ++ GEL+Q+ER   +Q  R+G  RV
Sbjct: 256 LYNTITITQAVIFCNTIKAVKWLSGKMREQNFSLCSIHGELNQKERDKIMQDFRNGEYRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+  RG+D+  + +VI+ +L +N E  +HR GR+GR GRKG+++  +         
Sbjct: 316 LVATDIWGRGLDVQQVSVVINYDLPTNRELYIHRIGRSGRFGRKGVAINFVKNEDVSALR 375

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    E I
Sbjct: 376 DIEQYYSTQIDEMPYNVSELI 396


>gi|260596009|ref|YP_003208580.1| ATP-dependent RNA helicase RhlB [Cronobacter turicensis z3032]
 gi|260215186|emb|CBA27017.1| ATP-dependent RNA helicase rhlB [Cronobacter turicensis z3032]
          Length = 421

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ +AL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AAEDRQVNQPRALIMAPTRELAVQIHSDAEPLAKATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|166711813|ref|ZP_02243020.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 458

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/410 (32%), Positives = 199/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I  LA+   KD + + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPHIIRALAREILKDPIEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFTPESSVVFCNTRKEVDEVAGSLHEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|304382917|ref|ZP_07365399.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
 gi|304335942|gb|EFM02190.1| ATP-dependent RNA helicase DeaD [Prevotella marshii DSM 16973]
          Length = 420

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 175/378 (46%), Gaps = 10/378 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            +  +   T +QE  +   L   D++  AQTG+GKT A+ L + S L    D   P    
Sbjct: 17  YDMHFDTCTPIQEKCIPEILNGHDIMGVAQTGTGKTAAYLLPILSRL---ADGGFPDETI 73

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGT 131
             + ++PTRELA Q+ + ++        V +V + G +               A +V+ T
Sbjct: 74  NCVIMSPTRELAQQIDQAMQGFGYYLQDVSSVAVYGGNDGNRYDQEVKSLRLGADVVIAT 133

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL  H+    ++ S +   VLDEAD MLD+GF DDI  I    PK  +++MFSAT+  
Sbjct: 134 PGRLISHLSLGKVDFSRVSFFVLDEADRMLDMGFSDDILTIFKQLPKTCQIIMFSATMPS 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            I  LA    K+ V V   + ++    I   A +     +   I +I +       I+F 
Sbjct: 194 KIEELAATMLKNPVEV-KIAVSKPAEKIKQTAYVCYEPQKLGIIKHIFKAGNLTRTIIFS 252

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +  V    + L     +   +  +L+Q ER   +   + G   V +ATD+ ARGID+ 
Sbjct: 253 GKKNKVKDINRALQRLHIKSGEMHSDLTQAERDEIMYRFKSGAIDVLVATDIVARGIDID 312

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  VI+ ++  + E+ +HR GRT RA R G ++  +        + + +     V   P
Sbjct: 313 DIYTVINYDVPRDAEDYVHRIGRTARAERDGNAITFVSDADISYFQSIEKFLEKEVEKLP 372

Query: 372 APSVEAIRERDAQRILQD 389
            P+  A+ E  A ++++ 
Sbjct: 373 LPA--ALGEAPAYKVVKK 388


>gi|303314883|ref|XP_003067450.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240107118|gb|EER25305.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 668

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 183 VTAFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 242

Query: 59  ASTLLAENDRFSPAS-------------APLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S          P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 243 LSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 302

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 303 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 362

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 363 EPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 422

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HG    ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 423 KVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 482

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 483 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 542

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 543 GLSTAFFNRGNRGVVRDLIELLKEAHQEVP 572


>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 461

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 119/414 (28%), Positives = 203/414 (49%), Gaps = 18/414 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I EA  +  +   +++Q+  +   L+++D++  AQTGSGKT AF + +   L      
Sbjct: 51  DEICEACEKLNFKAPSAIQKEAIPAALKQQDIIGLAQTGSGKTAAFAIPVIQALWENPCP 110

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F        + +APTRELA Q+  + E L    GV   V +GG+ +  +   +    HI+
Sbjct: 111 F------FGVVLAPTRELAYQISEQFEALGGAMGVKSVVIVGGMDMVTQAVAISKKPHIL 164

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH+      ++ +LK +V+DEAD +LD+ F   I+ IL   PK+RR  +FSA
Sbjct: 165 VCTPGRLMDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPIIDKILKVIPKERRTFLFSA 224

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +    + VR+ ++S+      +  + +      +D  +V I+     ++ 
Sbjct: 225 TMTSKVEKLQRASLHNPVRIAVSSKFSTVDTLLQKYLFFPFKHKDTYLVYIVNEMAGQSM 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T     R   +L    F  + L G+LSQ  R  AL   + G   + +ATDVAARG
Sbjct: 285 IIFTRTVNDTQRVAILLRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P ++ VI+ ++ ++ +  +HR GRT RAGR G S+ ++ Q       R+       +
Sbjct: 345 LDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQYDLEPFLRIEAAIQKKM 404

Query: 368 VWEPAPS------VEAIRERDAQRILQDPLFLDSIQ-----GDEKKMVDVLLAK 410
               AP        E + E   + I+Q     +  +       ++K  D+   +
Sbjct: 405 EEYDAPKEDVLLLSERVGEAQREAIIQMKEIHEKRKMKGRGKGKRKHDDMDREE 458


>gi|254457791|ref|ZP_05071219.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
 gi|207086583|gb|EDZ63867.1| dead/deah box helicase domain protein [Campylobacterales bacterium
           GD 1]
          Length = 453

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 209/409 (51%), Gaps = 18/409 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F N+P  + +   L E GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L
Sbjct: 1   MK-FSNLPLSKEMLHNLEEIGYKEMTPIQAEALPHILDGKDVIAQAKTGSGKTAAFGIGL 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRE 117
            + L  +  R        +L + PTRELA QV +EL  L   T    +    GG +   +
Sbjct: 60  LTKLQVKKFRV------QSLILCPTRELADQVAKELRMLARATHNVKILTLCGGAAFGPQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L +GAHI+VGTPGR+  H++   L++  L+ +VLDEAD MLD+GF ++I  +L  + 
Sbjct: 114 LGSLSHGAHIIVGTPGRILKHLKKATLSLEDLEMLVLDEADRMLDMGFSEEINEVLSFTK 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+++ L+FSAT +  I  ++KN Q +AV V   S    ++  +    +     + + IVN
Sbjct: 174 KRKQTLLFSATYTDEIMDISKNLQHEAVSVKTTSTETANNITERFYEVNDH-QKLDTIVN 232

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     +N I+F +T+       + L +     +A+ G+L Q ER++ L    +    V
Sbjct: 233 ILSNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYERNDVLVQFANRSCPV 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+ ++ +VI+ +L    E   HR GRTGRAG+ G++  +  Q    +A 
Sbjct: 293 LIATDVAARGLDIKEMSMVINYDLPHGDETYTHRIGRTGRAGQDGLAFTLFSQYEADKAY 352

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
               E  +        +V           ++       I+G +K  V  
Sbjct: 353 EYKNETRLFEDAGELKTVNGFE-------MKPQYITLVIEGGKKDKVRA 394



 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 44/232 (18%)

Query: 347 VIPQNMQRRAERL------FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
               N  ++ + +      F+  NV +        + + E   ++ +        ++  E
Sbjct: 218 FYEVNDHQKLDTIVNILSNFKPENVIIFTNTKIEAKELAENLLKKKIDALAIHGDLEQYE 277

Query: 401 KKMVDVLLAKHD-----PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
           +  V V  A           +AA  L I    +    ++ P    +   R     RA + 
Sbjct: 278 RNDVLVQFANRSCPVLIATDVAARGLDIKEMSMVINYDL-PHGDETYTHRIGRTGRAGQD 336

Query: 456 G----------GGSRDNFKGSSWFS----------------------LSVGSKQKAEARW 483
           G                +K  +                         +  G K K  A  
Sbjct: 337 GLAFTLFSQYEADKAYEYKNETRLFEDAGELKTVNGFEMKPQYITLVIEGGKKDKVRAGD 396

Query: 484 LMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
           L+  L   +G+   SIG I +    ++V + A  +D   R +K  K    K+
Sbjct: 397 LLGALTGDAGLQGSSIGKIDIYERQSYVAIEAKLIDEAHRQLKNGKIKGKKF 448


>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase domain-containing protein [Ralstonia
           pickettii 12J]
 gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
 gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
 gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
          Length = 627

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/395 (34%), Positives = 201/395 (50%), Gaps = 19/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 40  LDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQP 99

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P                    P  L + PTRELA+QV             +  A  
Sbjct: 100 EPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 159

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 160 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFSDD 219

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P  R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 220 IEAIVGATPATRQMLMFSATMDRRIEQLAERMMREPQRIEIAAAKVDQSNIEERLHFTDD 279

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +S +   + ++LR    K AIVF +T+       + L EH F   AL G++ Q  R+  L
Sbjct: 280 MSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTEHGFSAGALHGDMHQGARNRTL 339

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G+ RV +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 340 TALRRGQLRVLVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 399

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           +  N   +  R+ R  +  +       +E  R   
Sbjct: 400 VNHNDTFQWRRIERFVDRRIDASVVEGLEPKRSAK 434


>gi|15218574|ref|NP_177417.1| eukaryotic translation initiation factor 4A, putative / eIF-4A,
           putative [Arabidopsis thaliana]
 gi|75333652|sp|Q9CAI7|IF4A3_ARATH RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3;
           AltName: Full=ATP-dependent RNA helicase eIF4A-3;
           AltName: Full=DEAD-box ATP-dependent RNA helicase 23
 gi|12323781|gb|AAG51861.1|AC010926_24 putative Eukaryotic initiation factor 4A; 30924-32477 [Arabidopsis
           thaliana]
 gi|16974629|gb|AAL31217.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|21593752|gb|AAM65719.1| putative Eukaryotic initiation factor 4A [Arabidopsis thaliana]
 gi|22655476|gb|AAM98330.1| At1g72730/F28P22_8 [Arabidopsis thaliana]
 gi|332197244|gb|AEE35365.1| translation initiation factor 4A-3 [Arabidopsis thaliana]
          Length = 414

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 183/367 (49%), Gaps = 7/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L   
Sbjct: 47  ELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS 106

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL +APTRELA Q+ + +  L    GV    C+GG SV  ++R LQ+G 
Sbjct: 107 ------LVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV 160

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +F
Sbjct: 161 HVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVF 220

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+ P    + + +    VR+ +  +      I      +     +   + ++      
Sbjct: 221 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAI 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ 
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +    +R    + R  N
Sbjct: 341 ARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRFYN 400

Query: 365 VSVVWEP 371
           V V   P
Sbjct: 401 VVVEELP 407


>gi|169773163|ref|XP_001821050.1| ATP-dependent RNA helicase dbp4 [Aspergillus oryzae RIB40]
 gi|238491114|ref|XP_002376794.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
 gi|91206545|sp|Q2UHB7|DBP4_ASPOR RecName: Full=ATP-dependent RNA helicase dbp4
 gi|83768911|dbj|BAE59048.1| unnamed protein product [Aspergillus oryzae]
 gi|220697207|gb|EED53548.1| DEAD box RNA helicase (Hca4), putative [Aspergillus flavus
           NRRL3357]
          Length = 796

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/461 (22%), Positives = 196/461 (42%), Gaps = 10/461 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P  +     L+   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + + 
Sbjct: 45  KSFSDLPLSEPTASGLASSHFKTLTDIQSRAIGHALKGRDILGAAKTGSGKTLAFLIPVL 104

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     ++S      AL ++PTRELA+Q+   L  +         + IGG S+  E+ 
Sbjct: 105 ENLY--RKQWSEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLKEEQE 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +    ++ +L+ +VLDEAD +LD+GF+  ++ I+   PK+
Sbjct: 163 RLGRMNILVCTPGRMLQHLDQTAMFDVFNLQMLVLDEADRILDMGFQKTVDAIVGHLPKE 222

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT +  ++ LA+   +D   V +         S +    V+  LS + + + +
Sbjct: 223 RQTLLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSTLQQHYVVTPLSQKLDVLWS 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            +R +     IVF S+   V    +        +  +     Q++             + 
Sbjct: 283 FIRSNLKAKTIVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDITAKFSQAKH 342

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  +TD+ ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + +  
Sbjct: 343 AVLFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEESG 402

Query: 356 AERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             +   +  V +      + +   IR++      +DP      Q      V  +  + D 
Sbjct: 403 MLKRLEQKKVPIERINIKANKQQSIRDQLQNMCFKDPELKYLGQKAFISYVKSVYVQKDK 462

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           E      L++            P       D  ++   A +
Sbjct: 463 EVFKLKELKLEDFASSLGLPGAPRIKFIKGDDTKERKNASR 503


>gi|331005214|ref|ZP_08328607.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
 gi|330420957|gb|EGG95230.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC1989]
          Length = 462

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 132/382 (34%), Positives = 201/382 (52%), Gaps = 9/382 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++     + E L    Y  +T +Q   L P +  +DV+  A+TGSGKT AFGLA+ 
Sbjct: 4   TCFQSLSLNTSLLENLKSLQYKEMTEIQAQSLPPMIAGQDVIAQAKTGSGKTAAFGLAML 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           + L  +  R        +L + PTRELA QV +E+  L      + V    GG     + 
Sbjct: 64  NKLQVKRFRV------QSLVLCPTRELADQVAKEIRRLGRGIHNIKVLTLCGGAPFGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHIVVGTPGR+ +H+R   L +  +   VLDEAD MLD+GF+  ++ I+D  P 
Sbjct: 118 GSLEHGAHIVVGTPGRIEEHLRKGTLRLDDVTTFVLDEADRMLDMGFQPSLDAIVDYLPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT    I  +AK    + +RV + + +   S   +   L     R  A+  +
Sbjct: 178 KRQTLLFSATYPEQIQLIAKRIMHEPIRVTVETAHDDSSIEQHFYALEDGRSRTEALQLL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +   +A+VFC+T+         LA   F  VAL+G++ Q+ R   L    +  A + 
Sbjct: 238 LLTYRPNSAVVFCNTKRETQEVADELARMGFAAVALNGDMEQKMRDQTLVRFANNSASIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ DL+ V + +LS   +   HR GRTGRAG KG +  +     + + E 
Sbjct: 298 VATDVAARGLDIDDLDAVFNYQLSREIDVHTHRIGRTGRAGSKGHAFTLYTSKERYKVEM 357

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           L ++ +  V   P P+V  + E
Sbjct: 358 LEKQLSCVVEPSPLPNVSVLNE 379



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
                    S   +  G KQK     ++  L    GI  + +G I V  +  +V V    
Sbjct: 378 NEPAYKPSMSTLQIDGGKKQKVRPGDIVGALTGEGGITGKQVGKIHVFDNTAYVAVERSE 437

Query: 518 VDLLRRTVKLDK 529
           V      ++  K
Sbjct: 438 VKTALHKIERGK 449


>gi|74006746|ref|XP_861599.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 13 [Canis familiaris]
          Length = 656

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/384 (29%), Positives = 194/384 (50%), Gaps = 16/384 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTLLAENDRFS------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            S + ++               P++L +APTRELAVQ+  E      ++ V   V  GG 
Sbjct: 239 LSQIYSDGPGEENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGA 298

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I
Sbjct: 299 DIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRI 358

Query: 173 LDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++            +MFSAT    I  LA+++  + + + +        +I  + V V  
Sbjct: 359 VEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEE 418

Query: 229 SDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL
Sbjct: 419 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 478

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++   
Sbjct: 479 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 538

Query: 348 IPQ---NMQRRAERLFREANVSVV 368
             +   N+ +    L  EA   V 
Sbjct: 539 FNERNINITKDLLDLLVEAKQEVP 562


>gi|239993440|ref|ZP_04713964.1| ATP-dependent RNA helicase DbpA [Alteromonas macleodii ATCC 27126]
          Length = 459

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 127/401 (31%), Positives = 207/401 (51%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I   I +AL  +G   L+ +Q   L   L+ KDV+  AQTGSGKT+ F +     +   
Sbjct: 10  DINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVIPALQHVEVN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
           +          A+ + PTRELA QV ++        G +      GG  +  + + L++ 
Sbjct: 70  D------FTTQAIILCPTRELADQVAQQCRSAAKNIGNIKVTTLCGGQPMGPQIQSLKHS 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ DH+  + +++S++K  VLDEAD MLD+GF DD+  I   +PK+ + L+
Sbjct: 124 PHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  I  +AK Y  + V   + S++ + +        V    R  A+  +L ++  
Sbjct: 184 FSATFTEQIERVAKQYLHNPVTCKVESQDSKPAI-TQLGYNVLPHTRTQALKAVLTHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           KNAIVFC+ +  V+   + L E  F    L G+L Q +R++ L        +V +ATDVA
Sbjct: 243 KNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  VI+  +S  PE  +HR GRT RAG +GM+V ++  + +    ++     
Sbjct: 303 ARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEHFLRKIEVLQE 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +  + A S+         +I Q      S+   +K+ + 
Sbjct: 363 SDIPLKGAQSLRF----HKNKITQPEFTCISLSAGKKEKLR 399



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTV 525
           SLS G K+K     L+  L + +GI    +G I+VQ  ++FV V        +   R   
Sbjct: 389 SLSAGKKEKLRPGDLVGALTKDAGIPGDDLGKIKVQNSMSFVAVKTRSVKKAMAHFREGK 448

Query: 526 KLDKGIQLKYL 536
              K I+ + L
Sbjct: 449 IKGKRIRARKL 459


>gi|115757139|ref|XP_786173.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973714|ref|XP_001179743.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 487

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 121/410 (29%), Positives = 208/410 (50%), Gaps = 11/410 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
            V+ EA  +  +   + +Q   L   L+ KDV+  A+TGSGKT AF L +   LL    R
Sbjct: 67  DVLCEACDKLKWKTPSKIQTEALPVALQGKDVIGLAETGSGKTGAFALPILQALLETPQR 126

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + E L +  GV   V +GG+ +  +   L    H++
Sbjct: 127 ------LFALVLTPTRELAYQIAEQFEALGSTIGVSCVVIVGGIDMMTQALQLAKKPHVM 180

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+      N+  LK +V+DEAD +L++ F  +I+ IL   PK+RR  ++SA
Sbjct: 181 IATPGRLVDHLENTKGFNLRGLKYLVMDEADRILNMDFEAEIDKILKVIPKQRRTYLYSA 240

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D V+V ++++ +  S +    + +    +D  +V+IL      + 
Sbjct: 241 TMTKKVAKLQRASLQDPVKVEVSTKYQTVSKLQQSYIFIPAKYKDCYLVSILNEFAGNSF 300

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VFCST  +  R   +L       + L G+LSQ +R   L   +     + IATDVA+RG
Sbjct: 301 MVFCSTCNNTQRVALLLRNLGLTAIPLHGQLSQSKRLGTLNKFKSKSRSILIATDVASRG 360

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+ +  +  +
Sbjct: 361 LDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRAGKAITFVTQYDVELYQRIEQLIDKKL 420

Query: 368 VWEPAPSVEAIRERDAQRILQDPLF--LDSIQGDEKKMVDVLLAKHDPEK 415
                 + E       +R+ +   +  ++    DEKK       +   E 
Sbjct: 421 PLFK--TEEEEVMMLMERVTEAQRYAKMEMRDSDEKKKGGRSRGRDSKED 468


>gi|3122189|sp|Q26696|DDX17_TRYBB RecName: Full=Putative DEAD-box RNA helicase HEL64
 gi|1166504|gb|AAC46964.1| HEL64 [Trypanosoma brucei]
          Length = 568

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 183/368 (49%), Gaps = 7/368 (1%)

Query: 1   MKIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+++    P  + + L+ + +   T VQ       L  +D++  A+TGSGKT+ F +
Sbjct: 99  MSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMV 158

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              + +  +         P+ + +APTRELA Q+  E + +            GG     
Sbjct: 159 PALAHIAVQEP-LRSGDGPMVVVLAPTRELAQQIEEETKKVIPGDVY-CGCVYGGAPKGP 216

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I    
Sbjct: 217 QLGLLRRGVHILVATPGRLIDFLDIKRINLHRVTYLVLDEADRMLDMGFEPQVRKICGQI 276

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAI 235
              R+ +MFSAT    I  LA  +QK  +R+++ S   + + D+  R +L     + + +
Sbjct: 277 RPDRQTVMFSATWPREIQRLAAEFQKQWIRISVGSTELQANKDVTQRFILTQEFAKQDEL 336

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +++ H  +  +VFC  + +     + L    +  +A+ G+  Q++R   L   R    
Sbjct: 337 RKLMQEHREERVLVFCKMKRTADELERQLRRWGYDAMAIHGDKEQRQREFILARFRKDPR 396

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVAARG+D+  LE VI+ +     ++ +HR GRTGRAG +G  V++I +   + 
Sbjct: 397 LCLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLITKKEAQI 456

Query: 356 AERLFREA 363
              + +E 
Sbjct: 457 TPSVLKEL 464


>gi|126173085|ref|YP_001049234.1| ATP-dependent RNA helicase SrmB [Shewanella baltica OS155]
 gi|125996290|gb|ABN60365.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 419

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 184/385 (47%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L+  G+ + T++Q+  +   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLNAMGHHSPTTIQQETIPYALEQRDILARAPTGTGKTASFLLPSLQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    RF+  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRFAGQA--RILILTPTRELASQIHRYACHLATGQGLDIAIVTGGVPYGPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL +++     N   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 AGKVDILVATPGRLMEYLDKGNFNAQEVDILIIDEADRMLDMGFSSVVQAIAIEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+             +          R      ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGGGVQRFAREVLNDPIEIDVEAPRSEKAKIHQWIHLADDKEHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K  IVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 RQEDVKRTIVFVKTRDIVSSLEGQLLKVGIACAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDITHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRV---IEELRPKNKE 382


>gi|320037809|gb|EFW19746.1| ATP-dependent RNA helicase DED1 [Coccidioides posadasii str.
           Silveira]
          Length = 666

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 181 VTAFTNPPLDDHLISNIKLATYKTPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 240

Query: 59  ASTLLAENDRFSPAS-------------APLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S          P                P +L +APTREL  Q+  E      ++ V  
Sbjct: 241 LSQAFKNGPSAVPTQNANQFSYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 300

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 301 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGF 360

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 361 EPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 420

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +   V  +D+ + +++IL  HG    ++F  T+      ++ L    F   A+ G+ +Q+
Sbjct: 421 KVEYVEDADKRSVLLDILHTHGTGLTLIFVETKRMADSLSEFLINQNFPATAIHGDRTQR 480

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  
Sbjct: 481 ERERALEYFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNT 540

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVV 368
           G+S     +  +   R    L +EA+  V 
Sbjct: 541 GLSTAFFNRGNRGVVRDLIELLKEAHQEVP 570


>gi|159125027|gb|EDP50144.1| ATP dependent RNA helicase (Dbp1), putative [Aspergillus fumigatus
           A1163]
          Length = 674

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 192/388 (49%), Gaps = 23/388 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S 
Sbjct: 190 FTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPILSQ 249

Query: 62  LLAENDRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                    PA A             P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 250 AFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCVV 309

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF   
Sbjct: 310 YGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQ 369

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I       +  +R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 370 IRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 429

Query: 225 LVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            V   D+ + +++IL  H  +   ++F  T+      +  L    F   A+ G+ +Q+ER
Sbjct: 430 YVEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRER 489

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G+
Sbjct: 490 ERALEMFRSGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGI 549

Query: 344 SVFVIPQNMQ---RRAERLFREANVSVV 368
           +     +  +   R    L +EA+  V 
Sbjct: 550 ATAFFNRGNRGVVRELIDLLKEAHQEVP 577


>gi|255033889|ref|YP_003084510.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254946645|gb|ACT91345.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 481

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 184/361 (50%), Gaps = 10/361 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE + + +  A+    Y   T +QE  +   L  KD+L  AQTG+GKT A+ + +   + 
Sbjct: 6   FE-LHEDVLNAVDSMNYQQATPIQEQAIPHILSGKDLLACAQTGTGKTAAYLIPILDKVA 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRD 120
            E +  +      AL + PTRELAVQ+ ++++ L    G           G    ++++ 
Sbjct: 65  HEANEHTG-----ALILVPTRELAVQIDQQIQGLGYFVGATSIAVYGGNKGPEWDQQKKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA I++ TPGRL  H++   ++   L+ +VLDEAD MLD+GF  DI  I+   P +R
Sbjct: 120 LTQGADIIIATPGRLIAHLQLGYVHFRDLRHLVLDEADRMLDMGFLGDILKIMSYLPNER 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT+ P I                 + +R    ID +  L     +   ++++L+
Sbjct: 180 QTLMFSATMPPKI-GDLAKRILKEPEEIRLAVSRPADRIDQQFYLAKDEQKLPLLMHLLK 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + ++F S +++V    + L +       +S +  Q ER   L+  ++ +  + +A
Sbjct: 239 GVENISMVLFTSRKSNVEPIVRALRKLGLGAHGISSDSEQGEREIVLRDFKNRQFPILVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV +RGID+ +L  V++ ++  +PE+ +HR GRT RA  KG ++  I +  Q+   ++ 
Sbjct: 299 TDVLSRGIDIDNLSHVVNYDVPRDPEDYVHRIGRTARAESKGTAMTFINEQDQKYVLKIE 358

Query: 361 R 361
           R
Sbjct: 359 R 359


>gi|125839926|ref|XP_001340860.1| PREDICTED: probable ATP-dependent RNA helicase DDX6 [Danio rerio]
          Length = 483

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 175/374 (46%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 90  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 149

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +  + D         A+ + PTRELA+QV +  +       G+ V    GG ++  +   
Sbjct: 150 IDLKKDYI------QAIVLVPTRELALQVSQISINMSKHLGGIKVMATTGGTNLRDDIMR 203

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H+++ TPGR+ D I+     +  ++  V+DEAD++L   F   IE I+   PKKR
Sbjct: 204 LDEIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEADKLLSQDFVVLIEDIISFLPKKR 263

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++      + +    +N+  E             V    + + +  +  
Sbjct: 264 QILLYSATFPISVQKFMTKHLQKPYEINLMDELTLKGI-TQYYAYVTERQKVHCLNTLFS 322

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K + +  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 323 RLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVC 382

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I    +   + + 
Sbjct: 383 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLGLAINLITSEDRFNLKGIE 442

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 443 DQLMTDI--KPIPS 454


>gi|326934003|ref|XP_003213086.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Meleagris
           gallopavo]
          Length = 944

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     +          +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     + +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|195453216|ref|XP_002073690.1| GK14240 [Drosophila willistoni]
 gi|194169775|gb|EDW84676.1| GK14240 [Drosophila willistoni]
          Length = 663

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 211/484 (43%), Gaps = 18/484 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + + E G+  +T +Q   + P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 179 VSEATLQGIQEMGFTEMTEIQSKSITPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 236

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 237 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 296

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  P +R+ ++F
Sbjct: 297 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPTRRQTMLF 356

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+    N     ++   ++     R   +   L+ +
Sbjct: 357 SATQTARIDALSKLALKKEPIYVGVHDNEANATVEGLEQGYIVCPSEKRLLVLFTFLKKN 416

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 417 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 476

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G+ G ++ ++         R  +
Sbjct: 477 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGQSGHALLLMRPEELGFL-RYLK 535

Query: 362 EANVSVVWEPAPSVEAI-RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
            A V +        + +  +   ++++    FL+    +  K        H  ++I    
Sbjct: 536 AAKVPLNEFEFSWQKIVDIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVN 595

Query: 417 ---AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                   +    G   P  +      + R R          G   + N          V
Sbjct: 596 TLDLQAVAKSF--GFLVPPVVDLKVGAAKRQRPEKRMGGGGFGYYKQMNDTNKQRHFKQV 653

Query: 474 GSKQ 477
             +Q
Sbjct: 654 NREQ 657


>gi|207725326|ref|YP_002255722.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
 gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
          Length = 633

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 202/398 (50%), Gaps = 19/398 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 69  LDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQP 128

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P                    P  L + PTRELA+QV             +  A  
Sbjct: 129 EPQRPRVDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 188

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 189 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 248

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 249 IEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFTDD 308

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 309 MSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTL 368

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 369 TALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 428

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
           +      +  R+ R  +  +       +E  R    +R
Sbjct: 429 VNHGDTFQWRRIERFVDRRINATVVEGLEPKRSPKPRR 466


>gi|86148269|ref|ZP_01066565.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218710959|ref|YP_002418580.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
 gi|254797693|sp|B7VME9|RHLB_VIBSL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|85833965|gb|EAQ52127.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|218323978|emb|CAV20340.1| ATP-dependent RNA helicase RhlB [Vibrio splendidus LGP32]
          Length = 436

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 199/386 (51%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + + L A TG+  A+  GG S  ++   ++ GA
Sbjct: 76  EHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + DA  +L+D
Sbjct: 367 NLPPIEEYIEHAIPMSDYDASALLED 392


>gi|304411084|ref|ZP_07392700.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307301793|ref|ZP_07581551.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304350619|gb|EFM15021.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913831|gb|EFN44252.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 19  LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 79  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 133 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 193 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 253 SAVVFCNTKRETQKVADELDGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 313 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 372

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 373 EITSESLPS 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 386 GNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 445

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 446 AKKALNKITGGR 457


>gi|238762292|ref|ZP_04623264.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
 gi|238699639|gb|EEP92384.1| ATP-independent RNA helicase dbpA [Yersinia kristensenii ATCC
           33638]
          Length = 460

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDDLKILVLDEADRMLDMGFTDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   +++ L Y+   
Sbjct: 185 SATYPAGIEQISARV-QRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISALSYYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYMQM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSANTMLEPEMVTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGEAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
 gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
           15444]
          Length = 536

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 181/373 (48%), Gaps = 8/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F +  + + I +A++E GY   T +Q   +   L   DV   AQTG+GKT AF L + 
Sbjct: 4   TTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R   A  P  L + PTRELA QV    E       + +A+ IGGVS   +  
Sbjct: 64  QRLSTGRAR---ARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQET 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ G  +++ TPGRL D      L +  ++ +++DEAD MLD+GF  DIE I    P  
Sbjct: 121 LLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPAN 180

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ L+FSAT    I  LAK +QKD  ++ +    +    I              R  A+ 
Sbjct: 181 RQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALR 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     KN IVFC+ +  V      L +H      + G+L Q  RS  LQ  RDG+ +
Sbjct: 241 RVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLK 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+DVAARG+D+PD+  V +       E+ +HR GRTGRAGR G S  V+     +  
Sbjct: 301 LLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSW 360

Query: 357 ERLFREANVSVVW 369
             + +     V  
Sbjct: 361 GFVVKMIKKDVPE 373


>gi|83593250|ref|YP_427002.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83576164|gb|ABC22715.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 393

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 121/371 (32%), Positives = 194/371 (52%), Gaps = 5/371 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   + +  A++  GY   T +Q   + P L  +DVL  AQTG+GKT +F L L
Sbjct: 1   MTEFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRE 117
              L  +     P   P AL + PTRELA Q+   +  L      +   V +GGV + R+
Sbjct: 61  LQRLTKDPQPRVPGR-PRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R +Q G  I+V TPGRL D +  K +++  ++ +VLDEAD MLD+GF   ++ I    P
Sbjct: 120 TRMVQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +KR+ +MFSAT+   +T L  +   D VRV +A      + ID R + V  +++   +++
Sbjct: 180 RKRQTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLD 239

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +       + AIVF  T+   ++    L E+  +   + G  SQ  R  AL   + G+ R
Sbjct: 240 LLGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVR 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+ +L + PE+ +HR GRT RAG  G+++ +         
Sbjct: 300 ALVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYL 359

Query: 357 ERLFREANVSV 367
           + + +     +
Sbjct: 360 KAIEKVIKSRI 370


>gi|281351661|gb|EFB27245.1| hypothetical protein PANDA_013938 [Ailuropoda melanoleuca]
          Length = 940

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 265 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 324

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 325 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 383

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 384 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 443

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 444 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 503

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 504 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 563

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 564 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 620


>gi|238882849|gb|EEQ46487.1| hypothetical protein CAWG_04842 [Candida albicans WO-1]
          Length = 569

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 200/422 (47%), Gaps = 11/422 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 113 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 172

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 173 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATK 230

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P + 
Sbjct: 231 LAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN 290

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V    +      ++   V+     R   + 
Sbjct: 291 RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLF 350

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  
Sbjct: 351 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 410

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+  +  +    
Sbjct: 411 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 470

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             R  + A V +     P+ + A  +    ++++    L+    D  +      A H  +
Sbjct: 471 L-RYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLK 529

Query: 415 KI 416
            +
Sbjct: 530 TV 531


>gi|195502160|ref|XP_002098101.1| GE24123 [Drosophila yakuba]
 gi|194184202|gb|EDW97813.1| GE24123 [Drosophila yakuba]
          Length = 719

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 177/370 (47%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + +  +GY   T++Q       +   + +  A+TGSGKT+ + L     +  + 
Sbjct: 290 LPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQ 349

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+ +      + + V      GG     + RDLQ G  
Sbjct: 350 P-LQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCE 408

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 409 IVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 468

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILR 240
           AT    +  LA+++  + +++NI S     +    + V V          +         
Sbjct: 469 ATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDT 528

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+  V    + +     +  A+ G+ SQ ER   L+  R G++ + +A
Sbjct: 529 SESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVA 588

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVAARG+D+  ++ VI+ +   N E+ +HR GRTGR+  KG S     +N  ++A+ L 
Sbjct: 589 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALV 648

Query: 360 --FREANVSV 367
              REAN  +
Sbjct: 649 DVLREANQEI 658


>gi|118366889|ref|XP_001016660.1| P68-like protein, putative [Tetrahymena thermophila]
 gi|89298427|gb|EAR96415.1| P68-like protein, putative [Tetrahymena thermophila SB210]
          Length = 699

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/397 (26%), Positives = 178/397 (44%), Gaps = 27/397 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAI-------------------LNPDLREKDVLVSAQTG 47
            P+ I   + +  +     +Q                          L   D++  AQTG
Sbjct: 201 FPKYIMSVIEDSKFSEPMPIQAQYVTNKKQKKKYKMYECSFIPFPIVLSGHDLIGIAQTG 260

Query: 48  SGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
           SGKT++F L     + A+ D   P   P+AL +APTRELA Q+  +     +K  +    
Sbjct: 261 SGKTLSFMLPALVHINAQ-DPVKPGEGPIALVLAPTRELANQIQEQCFKFGSKCKISSVC 319

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG     + ++L+NG  IV+ TPGRL D +    +++  +  +VLDEAD MLD+GF  
Sbjct: 320 VYGGAPKIYQEKELRNGCDIVIATPGRLIDFLESNVIDLKRVTYLVLDEADRMLDMGFEP 379

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAV 224
            I  I+      R+ LMFSAT    +        +     +++     N  +       +
Sbjct: 380 SIRKIVGQIRPDRQTLMFSATWPQTVRRLALDFCHGDPIHIQIGDMENNVNNDIDQQVEI 439

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           +      D     +     +   I+F  T+      +K L     + + + G+ SQ++R 
Sbjct: 440 IDKSQKYDRVKEILSTMTRSDKTIIFTQTKKDCDDLSKALQTDNIRNICIHGDKSQRDRD 499

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             + + + GR    IATDVA+RG+D+ D++LVI+ +     E+ +HR GRTGRAG +G +
Sbjct: 500 KVMDLFKTGRVNTLIATDVASRGLDVKDIKLVINYDFPKQIEDYVHRVGRTGRAGAQGKA 559

Query: 345 VFVIPQNMQRRAER----LFREANVSVVWEPAPSVEA 377
           +  + Q   ++  +    + ++ N  +  +     EA
Sbjct: 560 ISFLDQYEDKKISKELVDVLKQNNQEISQDLLELSEA 596


>gi|114048723|ref|YP_739273.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-7]
 gi|113890165|gb|ABI44216.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 420

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 188/385 (48%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    R+S  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRYSGQA--RVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +          +          R+     ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRI---IEELRPKNKE 382


>gi|68467745|ref|XP_722031.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
 gi|46443978|gb|EAL03256.1| hypothetical protein CaO19.11444 [Candida albicans SC5314]
          Length = 569

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 200/422 (47%), Gaps = 11/422 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 113 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 172

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 173 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATK 230

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P + 
Sbjct: 231 LAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN 290

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V    +      ++   V+     R   + 
Sbjct: 291 RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLF 350

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  
Sbjct: 351 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 410

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+  +  +    
Sbjct: 411 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 470

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             R  + A V +     P+ + A  +    ++++    L+    D  +      A H  +
Sbjct: 471 L-RYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLK 529

Query: 415 KI 416
            +
Sbjct: 530 TV 531


>gi|68468064|ref|XP_721871.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
 gi|74656630|sp|Q5AK59|HAS1_CANAL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|46443813|gb|EAL03092.1| hypothetical protein CaO19.3962 [Candida albicans SC5314]
          Length = 565

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 200/422 (47%), Gaps = 11/422 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN    +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 109 LFENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 168

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 169 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATK 226

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P + 
Sbjct: 227 LAKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN 286

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V    +      ++   V+     R   + 
Sbjct: 287 RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLF 346

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  
Sbjct: 347 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+  +  +    
Sbjct: 407 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 466

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             R  + A V +     P+ + A  +    ++++    L+    D  +      A H  +
Sbjct: 467 L-RYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLK 525

Query: 415 KI 416
            +
Sbjct: 526 TV 527


>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 446

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 193/373 (51%), Gaps = 6/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I + L E G    T +Q   +   +  KD+L  +QTG+GKT+AF L +   +    
Sbjct: 18  IRRKINDFLRENGITEPTPIQVQAIPVLMTGKDLLAQSQTGTGKTLAFLLPVLEKIEVNK 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        +L I PTRELA+Q+  E + L  K G+ +    GG  V R+ + L+   H
Sbjct: 78  PQV------QSLIITPTRELALQITGEAKNLGDKLGINILSVYGGQDVERQIKKLKGHIH 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGRL DHIR K +++S +  +VLDEAD+ML +GF +D+E I+  SP K++ ++FS
Sbjct: 132 MVIGTPGRLLDHIRRKTISLSGVSKLVLDEADQMLHMGFLEDVEEIIRKSPVKKQTMLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+ P I  LA  Y +    + I S       I    + +   ++   +  ++  +    
Sbjct: 192 ATLPPRIRALAARYMRKPADIRIQSRQVILDKIKQIVIELEEKEKLTQLCRLIDENQPYL 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC TR   S     L +  +    L G+LSQ +R   ++     R ++ +ATD+AAR
Sbjct: 252 AIIFCHTRQRASELAAALIQRGYAADELHGDLSQAKRQQVMKRFSSARLQLLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V   ++S   E+ +HR GRTGRAG  G +V  +     R    + +    +
Sbjct: 312 GLDIEGVTHVYSYDISHYLESYIHRIGRTGRAGESGTAVTFVLPGEHRYLRIIEQGTGAA 371

Query: 367 VVWEPAPSVEAIR 379
           +    A   + I+
Sbjct: 372 IEKYTADGQKLIK 384


>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 393

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 197/366 (53%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+ +  +   T +Q   L   L+  D++  AQTG+GKT AF + +   L++ 
Sbjct: 18  NLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGADLIGQAQTGTGKTAAFLITILQRLVSN 77

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQ 122
                   +S P AL +APTRELA+Q+ ++   L       +++V  G     + R+   
Sbjct: 78  PILTEERFSSEPRALVVAPTRELALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKLRD 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +++ TPGRL DH+    + +  ++ +VLDEAD MLD+GF  D++ I+ ++P++R+ 
Sbjct: 138 EAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRERQT 197

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT S  I  LA+ + ++ V V +A ++     +D R  +V  S +   +VN+L+  
Sbjct: 198 LLFSATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLLVNLLKDS 257

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  IVFC+ R      ++ L  H  +   +SGEL QQ+R   L+  R G  RV +ATD
Sbjct: 258 ETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRGDFRVLVATD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RG+ +  +  V++  L  +PE+ +HR GRTGRAG  G+S+    ++       L + 
Sbjct: 318 VAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSISFACEDDSFLIPELEKY 377

Query: 363 ANVSVV 368
               + 
Sbjct: 378 LGHELA 383


>gi|311266965|ref|XP_003131337.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX42-like [Sus scrofa]
          Length = 941

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|291406357|ref|XP_002719521.1| PREDICTED: DEAD box polypeptide 42 protein [Oryctolagus cuniculus]
          Length = 935

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 390

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 184/371 (49%), Gaps = 5/371 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +     I   ++  GY   + +Q   + P    +DV   A+TG+GKT AF L +  
Sbjct: 15  TFDGLGLDPRIVANVARAGYATPSPIQALAIPPIRDGRDVEALARTGTGKTAAFALPVIH 74

Query: 61  TLLAENDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            LL      +P+  P    AL ++PTRELA Q    +       G+ VA+ IGG    R+
Sbjct: 75  RLLTGAGDAAPSGPPGHVRALILSPTRELASQTAGTVRTCIRGCGLTVALAIGGAPKDRQ 134

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L +G  I+V TPGRL DH+    + + H   +VLDEAD MLDLGF +D+  I    P
Sbjct: 135 ARALLDGVDILVATPGRLLDHLADATITLDHTTCLVLDEADRMLDLGFVEDVRAIAARLP 194

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+SPAI+ L +      +++    +      I  + +    + +  +++ 
Sbjct: 195 VRHQTLLFSATMSPAISALGRQLLHKPLQIAPPEQAAPPPRIRQQVIFTPAARKAASLLA 254

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +LR       +VF  T+ +     + L        AL G+  Q  R   L   R GR  V
Sbjct: 255 VLRREAGGRTMVFTRTKQAADALARTLNTGGVTAAALHGDHGQVRRDRTLDDFRRGRLLV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV ARGID+  + LV++ ++   PE  +HR GRT RAGR+G ++ +     + +  
Sbjct: 315 LVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTALSLCDPAERLKLR 374

Query: 358 RLFREANVSVV 368
            + R++   + 
Sbjct: 375 DIERQSGARIT 385


>gi|261491682|ref|ZP_05988263.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494445|ref|ZP_05990931.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309829|gb|EEY11046.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312635|gb|EEY13757.1| ATP-dependent RNA helicase RhlB [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 411

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/397 (27%), Positives = 189/397 (47%), Gaps = 3/397 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  AL+ +G+   T +Q       L   D+   AQTG+GKT+AF +A  + LL  N
Sbjct: 15  IHTNVLNALNSKGFEFCTPIQAKTFPITLNGNDIAGQAQTGTGKTLAFLIATFNHLL-NN 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  +  + P AL +APTRELAVQ+G + +       + +A+  GG    ++ + ++ G  
Sbjct: 74  EIETAKNQPRALILAPTRELAVQIGADAQLFLPHCDLKLALAYGGDGYDKQIQAIEKGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-- 184
           I+VGT GR+ D+++   +++  ++ +VLDEAD M DLGF  DI +++  +P     L   
Sbjct: 134 ILVGTTGRVIDYVKQGIIHLDKIQVIVLDEADRMFDLGFIKDIRYLMRKAPVPTERLTLL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSAKVRELAYEDMDNAEYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+       + LA    ++  L+G++ Q++R + L     G   + + TDVA
Sbjct: 254 DRCMIFANTKHKCEEIWQYLAADGHRIGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G S+    +        +     
Sbjct: 314 ARGLHIPDVTHVFNYDLPDDKEDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIG 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
             +          +      R      FL   + + +
Sbjct: 374 HQIPVSQYDKESLLTLPKVNRSRSKKTFLAKTKKNSR 410


>gi|225559047|gb|EEH07330.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus G186AR]
          Length = 631

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 210/470 (44%), Gaps = 14/470 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 158 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 215

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 216 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGV 275

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 276 NLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDRQTM 335

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 336 LFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 395

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +      I 
Sbjct: 396 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGTLIC 455

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 456 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 515

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P+   +  +   ++++    +L+    D  +      A H    +  
Sbjct: 516 -KEARVPVVEFDFPAKRIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFD 574

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 +++ ++          ++L +   R +        G   +   K
Sbjct: 575 VHKLDLVKVAKSFGFPTPPRVDITLAASMSRDKKQQGRRNYGSQPKHAPK 624


>gi|88860789|ref|ZP_01135426.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
 gi|88817384|gb|EAR27202.1| putative ATP-dependent RNA helicase DbpA [Pseudoalteromonas
           tunicata D2]
          Length = 460

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 140/412 (33%), Positives = 213/412 (51%), Gaps = 8/412 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+   Y ++T +Q   L   L  KDV+  A+TGSGKT AF L L   L    
Sbjct: 11  LQPALLENLTSLEYTSMTPIQAQSLPHILSGKDVIAQAKTGSGKTAAFALGLLENLDVRK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
            R        AL + PTRELA QV +E+  L      V  +   GGV +  +   L++GA
Sbjct: 71  YRV------QALVLCPTRELADQVAQEIRKLARGIPNVKVLALCGGVPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+  + L++SH+  +VLDEAD MLD+GF   ++ I+D +P+ R+ L F
Sbjct: 125 HIIVGTPGRIEDHLSRRTLDLSHVNTLVLDEADRMLDMGFSAALDAIIDQTPRDRQTLFF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A    +D V+V + S +   +   Y   +     R  A+  +L  H   
Sbjct: 185 SATFPEKIQQIASRTMRDPVKVEVESSHNNVNIRQYFYKVEQNKQRTTALRLLLLKHEPN 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+TR         LA   F V+AL GEL Q+ER   L    +    + +ATDVAA
Sbjct: 245 SCVVFCNTRVETQAVADELAVSGFSVLALHGELEQRERDQTLVRFANKSISILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L++VI+  ++ +PE  +HR GRTGRAG KG +  +   N   R   +    + 
Sbjct: 305 RGLDINELDMVINYHITQDPEVHVHRIGRTGRAGSKGTAHSLFTDNESYRVAAVSEYFDK 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                  P    + ++  ++ L   L +D  +  + +  D+L A    + IA
Sbjct: 365 QFELSALPPF-TLLDKVPEKPLMVTLQIDGGKKQKVRPGDILGALTSKDGIA 415



 Score = 63.8 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G KQK     ++  L    GI  + +G I V  +  +V V+ D      R +
Sbjct: 386 MVTLQIDGGKKQKVRPGDILGALTSKDGIAGKQVGKITVLENFAYVAVARDAAKPALRKL 445

Query: 526 KLDK 529
             DK
Sbjct: 446 GEDK 449


>gi|310657448|ref|YP_003935169.1| ATP-dependent RNA helicase, dead/deah box family [Clostridium
           sticklandii DSM 519]
 gi|308824226|emb|CBH20264.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           sticklandii]
          Length = 411

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 201/373 (53%), Gaps = 8/373 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + E L +      T VQ   +   L  +DV+  AQTG+GKT+AF L +   +  +++  
Sbjct: 13  ELSERLLKLRIDTPTQVQVKSIPYILEGRDVIAQAQTGTGKTLAFLLPILEKIDVDSED- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL I+PTRELA+Q+  E + L +  G+ +    GG  V ++   L+    +VV
Sbjct: 72  -----TQALIISPTRELAIQISEEAQKLISVKGINILSAYGGQDVEKQLNKLKKNIPLVV 126

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGR+ D IR + LN+S LK +VLDEAD+ML +GF D+++ I   +P +++++ FSAT 
Sbjct: 127 GTPGRILDLIRRESLNLSKLKMLVLDEADQMLHMGFLDEVDAIFSYTPSEKQVMCFSATF 186

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           +  +  LAK Y  +   V++  +N    +ID   V      +  A+  ++       AIV
Sbjct: 187 NKEVKKLAKTYMNEPHYVSVKGQNVTLDEIDQIIVHTTDRKKQEALCEMIDTQQPFMAIV 246

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           FC T+  V+   + L++  +    L G+LSQ +R   ++  R+ + ++ IATDVAARGID
Sbjct: 247 FCRTKRRVTALYEDLSQKGYNCDQLHGDLSQAKREKVMKDFRNAKIQLLIATDVAARGID 306

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  +  + + ++  + +  +HR GRTGRAG KG +V  +        E+L  E ++    
Sbjct: 307 VDGITHIYNYDMVLDTDTYIHRIGRTGRAGEKGTAVTFVTPKHNASLEKL--EGDIKADV 364

Query: 370 EPAPSVEAIRERD 382
           +     +A++  D
Sbjct: 365 KKIEMHKAVKHED 377


>gi|301778305|ref|XP_002924562.1| PREDICTED: ATP-dependent RNA helicase DDX42-like [Ailuropoda
           melanoleuca]
          Length = 935

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|241956021|ref|XP_002420731.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223644073|emb|CAX41816.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 556

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 200/422 (47%), Gaps = 11/422 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FEN  + +    A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 100 LFENADLSEPTMRAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 159

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 160 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATK 217

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G +++V TPGRL DH++      S+LKA+V+DEAD +L++GF D+++ I+   P + 
Sbjct: 218 LSKGVNLLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNEN 277

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V    +      ++   V+     R   + 
Sbjct: 278 RQSMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLF 337

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + +  
Sbjct: 338 SFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 397

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+  +  +    
Sbjct: 398 ILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 457

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             R  + A V +     P+ + A  +    ++++    L+    D  +      A H  +
Sbjct: 458 L-RYLKAAKVPLNEYEFPANKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGLK 516

Query: 415 KI 416
            +
Sbjct: 517 TV 518


>gi|187476686|ref|YP_784709.1| ATP-dependent RNA helicase [Bordetella avium 197N]
 gi|115421272|emb|CAJ47777.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
          Length = 592

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 142/575 (24%), Positives = 244/575 (42%), Gaps = 45/575 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+   G+   T VQ A +   +   D++VS+QTGSGKT AF L   + +  ++
Sbjct: 8   LSPTILSAIEATGFSEPTPVQAAAIPRAMAGADLMVSSQTGSGKTAAFMLPALNRVAGQS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
              +       L + PTRELA+QV        A   G+     +GGV    + + L    
Sbjct: 68  P--NKGVGVQILVLTPTRELALQVADATATYGANLPGLRTTTVVGGVPYGAQLKALSRRV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  P+ R+ L+F
Sbjct: 126 DVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPQSRQTLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT+  ++  LA+   ++  R+ IA    +H++I    +     S +   + ++LR    
Sbjct: 186 SATLDGSVARLAEKMMREPERIEIAGHRDKHANITQSLLYADDASHKMRLLDHLLRDTRL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF +T+         L+E  F   AL G+++Q++R+  L  ++ G+ RV +ATDVA
Sbjct: 246 DQAIVFTATKRGADDLADRLSEQGFSAAALHGDMNQRQRTRTLTQLQRGQVRVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +   ++ +L    E+ +HR GRTGRAGR G++  +   + + +  R+     
Sbjct: 306 ARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGLAYTLAVHSERHKVRRIEHYIG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
            ++  E    +E       QR  +         G ++                       
Sbjct: 366 QTITPETIAGLE------PQRSPRPSSGGPRGNGGKRPDGRRFGGDRPQRSFG-----DR 414

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
             G   P +       S  DR + D      G   + +F             Q+      
Sbjct: 415 PQGDRPPRDFGDRPQRSFGDRPQGDRPQRDFGDRPQRSFGD---------RPQR------ 459

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSA-DGVDLLRRT------VKLDKGIQLKYLG 537
                      ++  G    +P  +F +    D  D  +R+             Q  +  
Sbjct: 460 -----SFGDRPQRDFGD---RPQRSFGDRPQRDFGDRPQRSFGDRPQRDFGDRPQRSFGD 511

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             + DF       F  +  +D   +  + F    +
Sbjct: 512 RPQRDFGDRPQRSFGDRPQRDFGDRPQRSFGDRPQ 546


>gi|291302062|ref|YP_003513340.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571282|gb|ADD44247.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 557

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 143/459 (31%), Positives = 224/459 (48%), Gaps = 31/459 (6%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALSE G     ++QE  +   +R  D++  A TG+GKT+ FG+ L  T+ +  +      
Sbjct: 42  ALSEIGITQAFAIQEYAIPIAMRGNDIIGRAPTGTGKTLGFGVPLLETVTSAAEGADGR- 100

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL +QV R++E      G+ V    GG +   +   L+ G  IVVGTPG
Sbjct: 101 -PQALVVVPTRELGLQVSRDIEAAGKTRGIRVLPIYGGRAYEPQLEALRTGVEIVVGTPG 159

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D ++ K L +  +   VLDEAD MLDLGF +D+E +L + P++R+ ++FSAT+  AI
Sbjct: 160 RLLDLLKAKHLKLGAVHTAVLDEADRMLDLGFAEDVEKLLAALPEQRQTMLFSATMPDAI 219

Query: 194 TTLAKNYQKDAVRVNIA--SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +L++ + K  + ++    ++N   +     A L    ++   +  IL+       IVF 
Sbjct: 220 VSLSRKFLKQPMTIHAEVATDNAPSAQTKQLAYLTHSLNKIEVLARILQAKDRGLTIVFS 279

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            T+    R    L    F V A+ G+L Q  R  AL+  R G+  V +ATDVAARG+D+ 
Sbjct: 280 RTKRHTQRVADDLEFRGFAVAAVHGDLGQNARERALRAFRSGKIDVLVATDVAARGLDVR 339

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  VI+ +   + E  +HR GRTGRAG  G++V  +                    WE 
Sbjct: 340 DVTHVINYDSPEDAETYVHRIGRTGRAGATGVAVTFVS-------------------WED 380

Query: 372 APSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
           AP  + I +  D +  L DP  +++    +    D+ + +  P  +A       R GL A
Sbjct: 381 APRWKIIAKTLDLE--LSDP--VETYHTSDHLYTDLDIPEGAPGSLATA--DQTREGLSA 434

Query: 431 PEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSSW 468
             +I       G+  R R  +R     G   ++    + 
Sbjct: 435 EADIDIEGGKRGKSARGRSGARRKASSGPRGESAPKPAR 473


>gi|158520071|ref|YP_001527941.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158508897|gb|ABW65864.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 464

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 197/375 (52%), Gaps = 9/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+ + G+   T +Q  IL   L  +D    AQTG+GKT AF +++ + +   
Sbjct: 60  DLPDALMHAIYDLGFTYCTPIQAEILPSTLAGRDAFGRAQTGTGKTAAFLISILTHMHNN 119

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
               +     P AL +APTREL +Q+G E + L       +V+V  G     ++ R  + 
Sbjct: 120 PITAARKPGTPRALVLAPTRELVIQIGEEAQQLARHLPVNIVSVFGGMDFKQQQDRLTRE 179

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  R + + +  ++ +V+DEAD MLD+GF  D+  I+ ++P+K    
Sbjct: 180 PVDIIVATPGRLLDFSRRRAVMLKQVEILVIDEADRMLDMGFIPDVRKIIYATPQKGNRQ 239

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT++ AIT LA  + +D V+V I  E+     +D    +V    +   + NI+  
Sbjct: 240 TLLFSATLTEAITRLASAWTRDPVQVAIEPEHVAVDSVDQVVYIVTSDRKLALLYNIIVQ 299

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VFC+ + +VSR    L  +  +   L+G++ QQ+RS  L+  + G+ RV +AT
Sbjct: 300 QNLSRVLVFCNRKDAVSRLADRLTRYGIKCEILTGDVPQQKRSRRLEDFKSGKIRVLVAT 359

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DV ARGI + D++ V++ +L  +PE+ +HR GRTGRAG  G S+    +        +  
Sbjct: 360 DVMARGIHVEDMDHVVNFDLPHDPEDYVHRIGRTGRAGAVGTSISFADERDSFYIPDIE- 418

Query: 362 EANVSVVWEPAPSVE 376
                 +  P P +E
Sbjct: 419 ----DFMERPLPCIE 429


>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
 gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
          Length = 397

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 183/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E GY   T++Q   +   L+ +D++ +AQTG+GKT +F L +   L  + 
Sbjct: 8   LSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILHKL--QG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+QV  ++      TG+      GGV    +++ L  G  
Sbjct: 66  RETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF D I  I+D  P+  + L+FS
Sbjct: 126 VLVATPGRLLDMYGQRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDAQYLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+     S+I+   + V    +   + +++  +    
Sbjct: 186 ATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHLITENNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L+  + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ +L    +  +HR GRTGRA  KG ++  + ++  +    +       
Sbjct: 306 GIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
 gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
          Length = 380

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/363 (30%), Positives = 184/363 (50%), Gaps = 3/363 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++ + Y     +Q+  +   L+ KD+L  A+TGSGKT +F L +    L + 
Sbjct: 8   LSKPLIKAIASQHYPKPYPIQQEAIPAILQGKDILGIAKTGSGKTASFVLPILE--LFQR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
              +      ALA+ PTRELAVQV    +   A     V        V    + +    A
Sbjct: 66  KSVARNRYIKALALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMMALRDA 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +    L ++ +  +VLDEAD+MLDLGF +++E I D  P+ R+ ++F
Sbjct: 126 EIVVATPGRLLDLMASNALQLTDVDILVLDEADKMLDLGFEEEMERIFDRLPRHRQTILF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  + KN  ++ V++ +  E +    I   A  V    +   +  +++    K
Sbjct: 186 SATLGDAIEDINKNLLRNPVKIEVVEEEQNLDLIKQTAYRVDAERKGPLLRYLIKEGKMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+  +       L ++     A+    +Q  R++AL   + G   V +ATD+ +
Sbjct: 246 QVLVFVSSTRTADNVVVKLNKNGIHAAAIHSGKTQGARTDALTKFKGGHLTVLVATDLIS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ EL  +P++ +HR GRTGRA  +G ++ +I    +   + + ++   
Sbjct: 306 RGIDIQLLPHVINFELPRSPKDYIHRIGRTGRAEAEGEAISLICPEDEHHFKIIQKKMGK 365

Query: 366 SVV 368
            V 
Sbjct: 366 RVE 368


>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
           mellifera]
          Length = 621

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+     + I   L ++G V  T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 179 LKSFKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 238

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L +     F     P  L I P+RELA Q    +              +   + IG
Sbjct: 239 IMFCLEQEVAMPFVRNEGPYGLIICPSRELAKQTYDIIRHYTNSLRQAGCPEIRSCLAIG 298

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +  G HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+ 
Sbjct: 299 GVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLCMDEADRMIDMGFEEDVR 358

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 359 TIFSFFRGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVVQEVEYVKQEA 418

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G   Q+ERS +++  
Sbjct: 419 KIVYLLECLQKTPPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAF 477

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+GR  V +ATDVA++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 478 REGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 537

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 538 ANDESVLLDLKHLLMEAKQKVPP 560


>gi|319427542|gb|ADV55616.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 19  LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 79  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 133 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 193 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 253 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 313 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 372

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 373 EITSESLPS 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           GS           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 386 GSTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 445

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 446 AKKALNKLTGGR 457


>gi|241953571|ref|XP_002419507.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223642847|emb|CAX43102.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 667

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S    + 
Sbjct: 194 LDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMKG 253

Query: 67  DRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P  L +APTREL  Q+  E +    ++ V   V  GG  + ++
Sbjct: 254 PAPVPESNGAFSSHKVYPTTLVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQ 313

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R++  G  ++V TPGRL D +    +++++++ +VLDEAD MLD+GF   I +      
Sbjct: 314 MRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVDECD 373

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             + K R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 374 MPAVKDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDDEKKS 433

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+++L  +     IVF  T+         L +  F   A+ G+ SQ ER  AL   ++G
Sbjct: 434 VILDLLSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNG 493

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 494 AAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 553

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 554 NIVKGLVELLSEANQEVP 571


>gi|217972083|ref|YP_002356834.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS223]
 gi|217497218|gb|ACK45411.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
 gi|315266255|gb|ADT93108.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 19  LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 79  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 133 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 193 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 253 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 313 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 372

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 373 EITSESLPS 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 386 GNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 445

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 446 AKKALNKITGGR 457


>gi|170038849|ref|XP_001847260.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167862451|gb|EDS25834.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 709

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 193/386 (50%), Gaps = 10/386 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E + + G+V  + +Q       L+ +D++  AQTG+GKT+AF L     +  +   
Sbjct: 301 PELLEEIRKAGFVKPSPIQAQAWPVLLKGEDMIGIAQTGTGKTLAFLLPAFIHIDGQPVP 360

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  L +APTRELA+Q+ +E++  Y   G+      GG    ++ + +  G  I+
Sbjct: 361 RGQRGGPNVLVMAPTRELALQIEKEVQK-YQFKGIKAICLYGGGDRRQQIKKVGEGVEII 419

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +    ++I+ +  +VLDEAD MLD+GF   I  +L      R+ +M SAT
Sbjct: 420 ICTPGRLNDLVSANVIDITSITYLVLDEADRMLDMGFEPQIRKLLLDIRPDRQTIMTSAT 479

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN-- 246
             P +  LA++Y K+ V+V + + +   +    + + V   +     V     +  KN  
Sbjct: 480 WPPGVRRLAQSYMKNPVQVYVGTLDLAATHTVTQQIEVIDEEDKYVRVMGFVKNMGKNDK 539

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC  +      +           ++ G+  Q +R  AL+ ++ G  RV IATDVA+R
Sbjct: 540 AIIFCGRKTRADDLSSEFVLSGINCQSIHGDRDQADREQALEDIKSGDVRVLIATDVASR 599

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREA 363
           G+D+ D+  V++ +   N E  +HR GRTGRAGR G+S+    ++         ++  EA
Sbjct: 600 GLDIEDITHVVNYDFPRNIEEYVHRVGRTGRAGRTGISLSFFTRSDWAIAAELIKILEEA 659

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
              V  E    + A+ ER A +  +D
Sbjct: 660 EQDVPDE----IRAMAERFAAKKERD 681


>gi|159465205|ref|XP_001690813.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158279499|gb|EDP05259.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 446

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 195/372 (52%), Gaps = 9/372 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     + EA +  G+   + +QE  +   L  +DV+  AQTGSGKT AF L +   
Sbjct: 19  FEKLGICTQLAEAAAGLGWKAPSHIQEQAIPHLLAGQDVIGLAQTGSGKTGAFSLPILQA 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+ +           AL ++PTRELA+Q+  ++E L +  GV   V +GG+ +  +   L
Sbjct: 79  LMDKPQEH------FALILSPTRELAIQIAEQVEALGSGIGVKSCVLVGGIDMMAQAIAL 132

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               H++VGTPGR+ DH+      ++  LK +VLDEAD++LD+ F  +I+ IL   P++R
Sbjct: 133 AKRPHVLVGTPGRVVDHLSNTKGFSLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRER 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSAT++  +  L +      V++ +A +      +  + V +    +D  +  ++ 
Sbjct: 193 RTQLFSATMTNKVQKLQRACLDKPVKIEVAHKYSTVDTLRQQYVFIPAKYKDCYLAYVIN 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T  S  R   +L    F  V + G +SQ +R  AL   + G   + +A
Sbjct: 253 ELSGSTFMIFTRTCESTRRIALLLRNLGFGAVPIHGHMSQPKRLGALNKFKSGERNILVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+P +++VI+ ++  N ++ +HR GRT RAGR G SV ++ Q      +++ 
Sbjct: 313 TDVASRGLDIPSVDVVINFDVPQNSKDYVHRVGRTARAGRSGRSVTIVTQYDVELFQKIE 372

Query: 361 REANVSVVWEPA 372
               V +    A
Sbjct: 373 HLTGVKMEQFQA 384


>gi|120597664|ref|YP_962238.1| ATP-dependent RNA helicase DbpA [Shewanella sp. W3-18-1]
 gi|120557757|gb|ABM23684.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 68  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 182 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 361

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 362 EITSESLPS 370



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           GS           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 375 GSTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 434

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 435 AKKALNKLTGGR 446


>gi|146294198|ref|YP_001184622.1| ATP-dependent RNA helicase DbpA [Shewanella putrefaciens CN-32]
 gi|145565888|gb|ABP76823.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 68  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 182 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 361

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 362 EITSESLPS 370



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 375 GNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 434

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 435 AKKALNKLTGGR 446


>gi|126175665|ref|YP_001051814.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS155]
 gi|152999404|ref|YP_001365085.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS185]
 gi|160874024|ref|YP_001553340.1| ATP-dependent RNA helicase DbpA [Shewanella baltica OS195]
 gi|125998870|gb|ABN62945.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
 gi|151364022|gb|ABS07022.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
 gi|160859546|gb|ABX48080.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L P L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKPELLENLSSMGYNEMTPIQAQSLPPILAGQDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 68  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQVGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ +P++R+ L+F
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPALDAIIEQAPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D   V +   +   S   +   L     R  A+  +L  H  +
Sbjct: 182 SATFPEQIQSIAKQIMYDPSMVKVEGNHDSLSIAQHFYHLDDDKARMQALQLLLLEHKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLER 361

Query: 366 SVVWEPAPS 374
            +  E  PS
Sbjct: 362 EITSESLPS 370



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+           +  G K+K     ++  L   +GI    +G I+V     +V V+   
Sbjct: 375 GNTPAAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIQVTDYRAYVAVNRKV 434

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 435 AKKALNKITGGR 446


>gi|261402374|ref|YP_003246598.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
 gi|261369367|gb|ACX72116.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus vulcanius
           M7]
          Length = 404

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 121/405 (29%), Positives = 201/405 (49%), Gaps = 16/405 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALAS 60
           FE  N+ +    A+  +G+   T +Q  ++   L   K+++  A+TGSGKT +F L L  
Sbjct: 8   FEELNLSENTLNAVRNKGFEKPTDIQTKVIPLFLNGEKNIVAQARTGSGKTASFALPLIE 67

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      A+ + PTRELA+QV  E+  L     + +    GG  +  + + 
Sbjct: 68  LI-------NEGEGIKAIILTPTRELAIQVADEINSLKGNKNLKIVKVYGGTPIQPQIK- 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               A+IVVGTPGR+ DHI    LN+  ++  +LDEADEML++GF DD+E IL++  K R
Sbjct: 120 YLKNANIVVGTPGRVLDHINRGTLNLKDVEYFILDEADEMLNMGFIDDVEKILNACNKNR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R+L+FSAT+   I  LAK Y  D   V                 +    ++    +  + 
Sbjct: 180 RILLFSATMPVEILNLAKKYMNDYEFVRAKRNADIEQT-----FIEVDENKRFETLCRIL 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VFC T+        +L +  F+  A+ G+L Q +R   +++ +  R ++ IA
Sbjct: 235 RDRNFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLKQHQREKVVRLFKQKRIKILIA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV +RGID+ DL  V++  L   PE  +HR GRTGRAG+KG ++ +I +   R+ + + 
Sbjct: 295 TDVMSRGIDVNDLSHVVNYHLPQTPEAYMHRIGRTGRAGKKGKAISIINRKEYRKLKHIE 354

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           R   + +      +  A   +  +   +   F +    +E K ++
Sbjct: 355 RTMKLKIKKYNTKNYNAKNIKSMKNEKKMNQFKEHKSKNEMKKLE 399


>gi|194216767|ref|XP_001501051.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           [Equus caballus]
          Length = 935

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|312883442|ref|ZP_07743168.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369058|gb|EFP96584.1| ATP-dependent RNA helicase DbpA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 458

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 127/402 (31%), Positives = 206/402 (51%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+  +T++Q+  L   L  KDV+   +TGSGKTV F L + + L  E
Sbjct: 9   NLASDLLVTLDSLGFSQMTAIQQQALPAILEGKDVIGQGKTGSGKTVTFSLGILNNLNVE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L   +  V V    GG+ +  +   L++G
Sbjct: 69  RFRI------QTLVLCPTRELADQVAKEIRTLARGRHNVKVLTLCGGMPMGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    +  S +   VLDEAD MLD+GF D I+ ++   P  R+ L+
Sbjct: 123 AHIIVGTPGRILDHMSKGRIQFSDINTFVLDEADRMLDMGFEDAIDTLVSELPINRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+    +A  +   + + + +   +   +     +D+A+  +L ++  
Sbjct: 183 FSATYPKHIEVLAEKVTSEAQMIKTQTHDEKTTIKQFFYEVDGTEAKDDALETLLLHYKP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++++VFC+T+  V   +  L    F V  L G++ Q+ER  AL    +    + +ATDVA
Sbjct: 243 ESSVVFCNTKKEVQDVSDELDRLGFNVAELHGDMEQRERERALITFANKSTSILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ V + ELS +PE  +HR GRTGRAG +G++          R  R+    +
Sbjct: 303 ARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGAEGLAFSFFTARESYRVARIEEYMD 362

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +  +    P      ++  +R     +    I G +K+ V  
Sbjct: 363 IECLPSQLP------QKLIERPFYPKMATIQILGGKKQKVRA 398



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
           +   +   +  G KQK  A  ++  L + + I    IG I +   +++V V  D V    
Sbjct: 380 YPKMATIQILGGKKQKVRAGDILGALTKQANIAASKIGKINILAMVSYVAVEHDVVKAAL 439

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 440 KQLQTGK 446


>gi|227114353|ref|ZP_03828009.1| ATP-dependent RNA helicase RhlB [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 429

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 192/387 (49%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  ANAERQTNQPRALIMAPTRELAVQIHSDAEALSHATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S   + +  A + L  P
Sbjct: 376 GHGIPVSKYNSDALMNDLPAPKRLTRP 402


>gi|212224191|ref|YP_002307427.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
 gi|212009148|gb|ACJ16530.1| DEAD/DEAH box RNA helicase [Thermococcus onnurineus NA1]
          Length = 403

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 204/390 (52%), Gaps = 15/390 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FEN+   +    A+  +G+   T +Q+ ++   L    D++  +QTG+GKT AF L + 
Sbjct: 2   SFENLGLSEATLVAVRRKGFSQPTDIQKEVIPRLLSGDADIIGQSQTGTGKTAAFALPII 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +        +  A+ +APTRELA+QV  E++ L  +  V V    GG  +  + R
Sbjct: 62  EAIDEKE------KSVQAIILAPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DHIR   L++S +K  +LDEAD MLD+GF DDIE I   +PKK
Sbjct: 116 ALERGTHVVVGTPGRVLDHIRRGTLDLSKVKFFILDEADRMLDMGFIDDIEAIFRETPKK 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+LMFSAT+   I  LA+ Y  D   + ++S+      ++   + V  + + +      
Sbjct: 176 KRVLMFSATMPREILRLARRYMNDYEVIKVSSDELVPGMVEQEYIEVVPARKFS--TLKK 233

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVFC+T+      ++ L +  +   AL+G++SQ  R       +  R R+ +
Sbjct: 234 ILSDDFYGIVFCATKRETRELSEKLRKQGYSAEALNGDMSQAARERTFWRFKTKRTRILV 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ D+  +++  L    E+ +HR GRTGR G+KG +V  I     +R   +
Sbjct: 294 ATDVAARGLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKKGKAVTFIMPGEFKRLRYI 353

Query: 360 FREANVSVVW----EPAPSVEAIRERDAQR 385
              A V +      E  P     R +  +R
Sbjct: 354 ASVAGVDIQKSELSEELPREYHERYKREER 383


>gi|114603670|ref|XP_001144645.1| PREDICTED: DEAD-box protein abstrakt isoform 1 [Pan troglodytes]
          Length = 606

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 13/373 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +    L +  R
Sbjct: 174 DAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKR 233

Query: 69  --FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGVSVHRERRD 120
             FS    P  L I P+RELA Q    LE+               A+CIGG+SV  +   
Sbjct: 234 LPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMET 293

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI  I      +R
Sbjct: 294 IRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQR 353

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I   AK+     V +N+        D+      V    +   ++  L+
Sbjct: 354 QTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQ 413

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F   +A V    + L     + VA+ G   Q+ER+ A++  R+G+  V +A
Sbjct: 414 KTPPP-VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVA 472

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI----PQNMQRRA 356
           TDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I     +++    
Sbjct: 473 TDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDL 532

Query: 357 ERLFREANVSVVW 369
           + L  EA   V  
Sbjct: 533 KALLLEAKQKVPP 545


>gi|332307071|ref|YP_004434922.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174400|gb|AEE23654.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 446

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 191/379 (50%), Gaps = 7/379 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +G+AL  +G+   T +Q   +   L  KD++ S++TGSGKT+AF L     
Sbjct: 3   FSDLPLDHRLGKALEIKGFTQATEIQAQAIPYALMGKDLIASSKTGSGKTLAFLLPAVQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L +         P  L +APTRELA QV  +L+WL AK  +  A+ +GG + + + + L
Sbjct: 63  VLTKQPL--SRKDPRVLILAPTRELAKQVFFQLKWLIAKHQLKAALILGGENFNDQVKAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++    VVGT GR+ DH+ GK L ++ L+ +++DEAD MLDLGF + ++ I  ++  ++R
Sbjct: 121 RHYPQFVVGTAGRIADHLSGKSLYLNGLEMLIMDEADRMLDLGFSEQLKQINAAADHRKR 180

Query: 182 MLMF---SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             M    +   +          +         S            +   ++ ++  + +I
Sbjct: 181 QSMMFSATLDNAALHHLTQSMLKAPQRISIGISSAEHKDIQQRFFLADNVTHKERMLAHI 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     +  IVF +TRA   R + +L E     +ALSG LSQ +R+N +     G+  + 
Sbjct: 241 INEKDHRQVIVFTATRADTERLSSLLKEQGLYSIALSGNLSQGQRNNIMSEFGRGQQHIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+A+RG+DL ++ LV++ +L    +  +HR GRTGRAG KG +V  +          
Sbjct: 301 VTTDIASRGLDLLNVSLVVNFDLPKLADEYVHRVGRTGRAGNKGEAVSFVGPKDWASYLS 360

Query: 359 LFREANVSVVWEPAPSVEA 377
           +       + +      EA
Sbjct: 361 IKSFLQQEISFSEIEGQEA 379


>gi|168062675|ref|XP_001783304.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665222|gb|EDQ51914.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 497

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/429 (24%), Positives = 191/429 (44%), Gaps = 16/429 (3%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M    FE++P  +    AL + G+ ++T +Q   +   L  +DVL +A+TGSGKT++F +
Sbjct: 1   MSTTAFESLPVSEPTKNALKDTGFTHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVV 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                L      F P +    + I+PTRELA+Q+      +         + +GG +   
Sbjct: 61  PAVELLFH--GHFMPRNGTGVIVISPTRELAMQIYGVARDILKYHKQTHGIVMGGANRRT 118

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           E   L  G + +V TPGRL DH++        +LK +V+DEAD +L++GF ++++ I+  
Sbjct: 119 EAEKLVKGVNFLVATPGRLLDHLQNTKGFVFKNLKCLVIDEADRILEIGFEEEMKQIIKL 178

Query: 176 SPKKRRMLMFSATI----SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            PK+R+ ++FSAT                  +   ++                     D+
Sbjct: 179 LPKERQTVLFSATQTTKVCGGSRGRWGLRWMEVHAMSGKEWEALQESGMQSDCCSWEEDK 238

Query: 232 --DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                 V   R       +VF S+  SV   +++L       + + G+  QQ+R++    
Sbjct: 239 GVVQQNVGTRRGVAWMQIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFE 298

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVI 348
             +    + + TDVAARG+D+P ++ +I  +   +P   +HR GRT R  G +G ++  +
Sbjct: 299 FCNAEKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGAQGRALLFL 358

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                   + L + A V +     P  + A  +   +++++   +L     D  +   + 
Sbjct: 359 IPEELGFLKYL-KGAKVPLNEYEFPLNKIANVQSQLEKLVEKNYYLHQSARDAYRSYLLA 417

Query: 408 LAKHDPEKI 416
              H  + I
Sbjct: 418 YNSHAMKDI 426


>gi|145350640|ref|XP_001419709.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579941|gb|ABO98002.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 723

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/436 (24%), Positives = 190/436 (43%), Gaps = 32/436 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E +   G+     +Q   L   +  +D +  A+TGSGKT+A+ L +   + A+ 
Sbjct: 124 LNNRVHELIRRSGFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAYILPMLRHINAQE 183

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P+ + + PTREL  Q+G++ +      G       GG  +  +  DL+ GA 
Sbjct: 184 P-LASGDGPIGMIMGPTRELVTQIGKDCKRYGKAMGFSAVSVYGGSGIAAQIGDLKRGAE 242

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV  TPGR+ D +     K  N+  +  +VLDEAD M D+GF   I  IL +    R+ +
Sbjct: 243 IVACTPGRMIDLLTTGSGKITNLRRVTYMVLDEADRMFDMGFEPQITRILANLRPDRQTV 302

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+    + + + I  ++  +SDI+    L    DR   ++ +L    
Sbjct: 303 MFSATFPHTMEALARAALDNPIEIQIGGKSVVNSDIEQLVELRPEEDRFLRVLELLGEWY 362

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+                        +      +  S  +   +     + +AT V
Sbjct: 363 ERGKII------------------------IFVASQDKADSTTISDFKSDVCNILVATSV 398

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---F 360
           AARG+D+ DL LVI+ +  ++ E+ +HR GRTGRAG+KG +V  I ++ ++ A  L    
Sbjct: 399 AARGLDVKDLRLVINYDTPNHLEDYVHRVGRTGRAGQKGTAVTFISEDEEKFAPDLVKAL 458

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-AG 419
           +E+  +V  +     +    +  + ++          G +    +  L +      A A 
Sbjct: 459 KESKQNVPQDVQAMADEFTRKRKEGLVGAAGSGFGGSGFKFNQEEQDLLRKQKRDAARAA 518

Query: 420 FLRIHRAGLCAPEEIT 435
            L +      + EE  
Sbjct: 519 GLDVDDGESDSDEEPA 534


>gi|332532711|ref|ZP_08408587.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037927|gb|EGI74376.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 415

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 187/361 (51%), Gaps = 4/361 (1%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F   N+  ++  A+ +  Y   T++Q   + P L   DV+ SAQTG+GKT AF L L 
Sbjct: 4   TTFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVLPLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +     A   + + PTRELA QV    E     T +  A+  GG S+  + +
Sbjct: 64  HKLLNTPKKDEQGLA-RVVILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQIK 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L   A ++V TPGRL DHI    + +S + ++V DEAD MLD+GF D+I  IL   P  
Sbjct: 123 AL-KTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPGD 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT   ++  L+K   K+   + +   N    +++     V    +   + +++
Sbjct: 182 RQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHMI 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+    +  K + +   +  ++ G+ SQ  R  ALQ  ++G  RV +
Sbjct: 242 GMKNWRRVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  VI+ EL    E+ +HR GRTGRAG +G+++ ++  + Q   E +
Sbjct: 302 ATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEEI 361

Query: 360 F 360
            
Sbjct: 362 E 362


>gi|257455420|ref|ZP_05620655.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
 gi|257447382|gb|EEV22390.1| ATP-dependent RNA helicase RhlB [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 184/380 (48%), Gaps = 11/380 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F  +P    + +A+ + GY  LT +Q  IL   L  +D +  AQTG+GKT  F L +
Sbjct: 2   FQTFSQLPLHPALKQAIDQLGYQTLTPIQAQILPNTLAGQDAIGQAQTGTGKTATFLLTI 61

Query: 59  ASTLLA-----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            + LL      E D         AL +APTRELA Q+ ++   L   T +     +GG  
Sbjct: 62  INELLNNPLNPEIDGDRFLGETRALVLAPTRELAQQIYQDCLELTKFTELHTVCLLGGTD 121

Query: 114 VHRERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              + +   Q    I++ TPGRL D      + +  L+ +VLDEAD MLD+GF  DI+ +
Sbjct: 122 YETQSKQLHQKFVDIIIATPGRLIDFCFQHHVYLDRLEILVLDEADRMLDMGFIPDIKRL 181

Query: 173 LDSSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           +   P         FSAT +  +  LA  +    + V IA E +    I+     +  SD
Sbjct: 182 IRMMPANTHRQTLLFSATFNQDVMNLAYRWLYQPIFVEIAPEQKTSQTIEQLFFTLMESD 241

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +  A+  I+     K  IVF + +  V R    L       V LSG++ Q +R   L   
Sbjct: 242 KLAALQQIIEKISPKKMIVFANRKDQVKRLYDKLNRQYKV-VILSGDVIQAKREKYLAQF 300

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G A + +ATDVA RGI + D+  V++  L  +P++ +HR GRTGRAG KGMS+  I +
Sbjct: 301 RQGDANILVATDVAGRGIHVDDVACVVNYTLPDSPDDYVHRIGRTGRAGNKGMSISFISE 360

Query: 351 NMQRRAERLFREANVSVVWE 370
           N       + +  + S+  +
Sbjct: 361 NDGFNLPAIEQYLDESIKMQ 380


>gi|288942044|ref|YP_003444284.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
           vinosum DSM 180]
 gi|288897416|gb|ADC63252.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
           180]
          Length = 454

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 185/381 (48%), Gaps = 5/381 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  GY   T VQ  ++   +   D+LVSA TGSGKT AF L +    +   
Sbjct: 10  LPDALMRGLANEGYTTPTPVQAQVIPLAMDGVDLLVSAATGSGKTAAFLLPIMQRFI--- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D      +  AL + PTRELA Q+      L + T +   V  GG S   +   L+    
Sbjct: 67  DVPRHDGSTRALILVPTRELARQIHIHFMRLGSYTRLTSGVITGGESKAHQIATLRKNPE 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL + +     N+  L+ +VLDEAD MLD+GF DD+  I+  S  +R+ L+FS
Sbjct: 127 ILVATPGRLLEFLETGQANLRDLEFLVLDEADRMLDMGFADDVLAIIRYSRPERQSLLFS 186

Query: 187 ATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+          +  +            +         +   L  +   ++ +LR+   
Sbjct: 187 ATLEQRGLSQITERLLRDPQRVDVDPVRQQHPDIAHCMLLSDGLEHKQQQLLWLLRHETY 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F +TR         L     +V  L GEL Q+ER+  + ++  GR    IATD+A
Sbjct: 247 EKALIFTNTREGAVALGNFLQGQQQRVAVLHGELDQRERNRVMGLLHSGRVNTLIATDLA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P ++ V + +L    ++ LHR+GRTGRAG  G+++ ++      R E + R  N
Sbjct: 307 ARGIDVPGVQRVFNFDLPRRGDDYLHRTGRTGRAGEAGVAISLVGPPEWNRMESIARYLN 366

Query: 365 VSVVWEPAPSVEAIRERDAQR 385
           ++        ++A  +   +R
Sbjct: 367 LTFEPREIEGLKASFKGPTKR 387


>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
 gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
           NOR5-3]
          Length = 435

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/365 (35%), Positives = 192/365 (52%), Gaps = 6/365 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A+++RGY   T +Q   +   L  +DVL +AQTG+GKT AF L +   L    
Sbjct: 9   LPD-LAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPILQRLAFVG 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A     L + PTRELA QV   +E       +  AV  GGV    +   L  G  
Sbjct: 68  --LAKAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAALARGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +V TPGRL D  +   ++ S L+ +VLDEAD MLD+GF  DI  I+D  P+ R+ LMFS
Sbjct: 126 TLVATPGRLLDLAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA  Y  D V V +A+ N     +   A  V    + + ++++L+YH    
Sbjct: 186 ATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKYHQWSQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC T+   +R TK L    F+   + G  SQ  R  AL   + G+ ++ +ATD+AAR
Sbjct: 246 VLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLLVATDIAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREA 363
           G+D+  L  V++ +L   P++ +HR GRTGRAG  G S  ++        +  ERL ++A
Sbjct: 306 GLDINQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRSHSLLASEDLPLLQGIERLIQKA 365

Query: 364 NVSVV 368
              V 
Sbjct: 366 IPRVQ 370


>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 194/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 223 IDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 403 VSLVHHAEQGALKRIERFVRSPL---PVNVIEGFEPRKA 438


>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 194/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 223 IDDIETIVAATPASRQTMLFSATLDGKIGSLTGRLLKDPERIEIQQRLESRTNIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 403 VSLVHHAEQGALKRIERFVRSPL---PVNVIEGFEPRKA 438


>gi|325180080|emb|CCA14481.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 594

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 186/405 (45%), Gaps = 20/405 (4%)

Query: 1   MKIFENIPQ-----------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSG 49
           ++ FENIP            +I   +    Y + T++Q   +   L  +DVL +A TGSG
Sbjct: 157 IETFENIPSGQNDKEKHFRSIILHNIEASEYKDPTAIQMQAIPSMLAGRDVLGTAPTGSG 216

Query: 50  KTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
           KT AF + +   L     R    ++  ++ ++PTRELAVQ+ +EL  L     +   V  
Sbjct: 217 KTAAFLIPILMRL----ARTHTQASIRSIIVSPTRELAVQIQKELRQLTVGYDLHSVVLS 272

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +V+   +       I++ TP RL   I+   +++S ++ + LDEAD + +LGF D I
Sbjct: 273 KTSAVNFSEK-PFPKIDILIATPLRLVHLIQQAKVDLSGVEVITLDEADRLFELGFIDQI 331

Query: 170 -EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            E I   +    +  MFSAT+   +   A +  +D  ++ +  +N     ID + + V  
Sbjct: 332 DEIIASCTFPDVQRTMFSATMLQGVEEAAISVLRDPHKIAVGVKNSGAKSIDQKLMFVGK 391

Query: 229 SD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            + +  A+  +        A++F   +  V    + L      V A+  + SQ +R   L
Sbjct: 392 EEGKLVAMKQLGHIGLQIPALLFVQNKERVDELYQELLYDGIHVGAIHADRSQMQRDQVL 451

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G+  V I TD+  RG+D   + +VI+ +   +  + +HR GRTGR GRKG +V  
Sbjct: 452 REFRAGKIWVLICTDLICRGLDFKAVNMVINYDFPQSAISYIHRIGRTGRNGRKGFAVTF 511

Query: 348 IPQNMQRRAERLFREANVSVVWEPAP--SVEAIRERDAQRILQDP 390
             +   +    +     +S    PA   S++       Q +L+ P
Sbjct: 512 FTERDMQFVRPIANVIKLSGQQVPAWMLSLKKPSNGKRQHLLKAP 556


>gi|321479275|gb|EFX90231.1| hypothetical protein DAPPUDRAFT_190268 [Daphnia pulex]
          Length = 623

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 180/381 (47%), Gaps = 17/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L ++G    + +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 187 MK----FPKGILVGLQKKGIKQPSPIQIQGLPTVLSGRDMIGIAFTGSGKTLVFVLPIVV 242

Query: 61  TLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGV 112
             L +  +    P   P  L + P+RELA Q+   +E             +   + IGG 
Sbjct: 243 FSLEQELKMPFLPNEGPFGLIVCPSRELAKQILETVEHFADCLAQQGMPRIKSCLIIGGT 302

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V++    +  G HI+V TPGRL D +  K + +   + + +DEAD M+D+GF +DI  I
Sbjct: 303 PVNQSLEIINRGVHIIVATPGRLMDMLDKKMIKLDVCRYLCMDEADRMIDMGFEEDIRTI 362

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   A++     + +N+        ++      V    + 
Sbjct: 363 FSYFKGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVVQEVEYVNQEAKI 422

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  ++       ++F   +  V    + L     + VA+ G   Q+ERS A+   R 
Sbjct: 423 VHLLECIQKTQPP-VLIFAEKKQDVDAIHEYLLLKGIEAVAIHGSKDQEERSRAVDAFRQ 481

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G KG +   I ++ 
Sbjct: 482 GIKDVLVATDVASKGLDFVNIQHVINYDMPDDIENYVHRIGRTGRSGNKGQATTFINKSN 541

Query: 353 QR----RAERLFREANVSVVW 369
           +       + L  EA  +V  
Sbjct: 542 EESVLLDLKHLLIEAKQNVPP 562


>gi|302789171|ref|XP_002976354.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
 gi|300155984|gb|EFJ22614.1| hypothetical protein SELMODRAFT_104808 [Selaginella moellendorffii]
          Length = 489

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 129/495 (26%), Positives = 225/495 (45%), Gaps = 35/495 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A++E G+ N+T +Q   +   L+ +DVL +A+TGSGKT+AF +     L    
Sbjct: 8   LSEPTKNAIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAFLVPAVELLYH-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    L I+PTRELA+Q+      L         + +GGV  + E   L+ G +
Sbjct: 66  ARFMPRNGTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIVMGGVKRNVEAEALKKGVN 125

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +L+ +V+DEAD +L++GF +D++ I+   PK+R+ ++F
Sbjct: 126 LLVSTPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKERQTVLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LAK   K A       + R  + +   +    +V    R   +   L+ +
Sbjct: 186 SATQTTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFTFLKKN 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L       + + G+  QQ+R+N      +    + + TD
Sbjct: 246 LKKKVMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGILLCTD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P ++ +I  +   +P+  +HR GRT R   GR G ++  +        +R  
Sbjct: 306 VAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGR-GRALLFLTPEELG-FKRYL 363

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-------- 411
             A V +     P  + A  +   + ++     L     D  +   +    H        
Sbjct: 364 TMAKVPLNEYMFPENKIANVQSQLENLIGKNYNLHRSARDAYRSYIMAYNSHAMKDAFNV 423

Query: 412 ---DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              D + +AA F      G   P +I  +S+ S   +FR   +  K  G           
Sbjct: 424 HRLDLQAVAASF------GFSCPPKINNLSIDSSAAKFRKQGKERKSSGHKFGASNPY-- 475

Query: 469 FSLSVGSKQKAEARW 483
                G +++ + R 
Sbjct: 476 -----GKRREDDKRQ 485


>gi|302309551|ref|NP_986999.2| AGR333Cp [Ashbya gossypii ATCC 10895]
 gi|299788412|gb|AAS54823.2| AGR333Cp [Ashbya gossypii ATCC 10895]
          Length = 504

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/458 (25%), Positives = 210/458 (45%), Gaps = 15/458 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L     L   
Sbjct: 45  NLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEML--H 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + I PTRELA+Q+      L         + IGG +  +E   L  G 
Sbjct: 103 SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGV 162

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D+++ I+   P + R  M
Sbjct: 163 NLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSM 222

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   +   L+
Sbjct: 223 LFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFTFLK 282

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + 
Sbjct: 283 KFQNKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVC 342

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  +      R 
Sbjct: 343 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPHELGFL-RY 401

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A V +     P+ + A  +   +++L+    L+ I  D  +      A H  + +  
Sbjct: 402 LKAAKVPLNEYEFPANKIANVQSQLEKLLKTNYELNKIAKDGYRSYLQAYASHSLKTVYQ 461

Query: 419 ----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451
                 +++ ++ G   P ++      SG+       R
Sbjct: 462 IDKLDLVKVAKSYGFPVPPKVNITIGASGKAPAAHKKR 499


>gi|271502412|ref|YP_003335438.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
           Ech586]
 gi|270345967|gb|ACZ78732.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
          Length = 428

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/365 (30%), Positives = 183/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPQVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  APAERQTNQPRALIMAPTRELAVQIHADAEALAKATGLRLGLAYGGDGYDKQLKVLEDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILIGTTGRLIDYTKQNHIHMGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTNQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G+S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGASGVSISLACEEYALNLPAIEDYI 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 GHHIP 380


>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
 gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
          Length = 962

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++P  + E +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L    
Sbjct: 240 SFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIV 299

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRER 118
            +  +         P+AL +APTRELA Q+   +                 GG S   + 
Sbjct: 300 HIGNQPP-ILRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQA 358

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 359 RDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 418

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+++M+SAT    +  LA ++  D +++NI S N   + +I     +    ++   +V 
Sbjct: 419 DRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRLVR 478

Query: 238 ILRYHGAKN--------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +L                I+F  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 479 LLNEIAPTKNSANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 538

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 539 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 598

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 599 PDNAKQARELISVLEEAGQT 618


>gi|254581554|ref|XP_002496762.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
 gi|238939654|emb|CAR27829.1| ZYRO0D07546p [Zygosaccharomyces rouxii]
          Length = 494

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/418 (26%), Positives = 197/418 (47%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + Q   +A+ + G+  +TSVQ   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 36  ELSQPTLKAIDKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIERL--H 93

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + I PTRELA+Q+      L         + IGG +  +E   L  G 
Sbjct: 94  SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADKLVKGV 153

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+++DEAD +L++GF +++  I+   P + R  M
Sbjct: 154 NLLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEEEMRQIIKILPNEDRQSM 213

Query: 185 FSATISPAITTLAKNYQ----KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +                     + V    +N     ++   V+     R   + + L+
Sbjct: 214 LFSATQTTKVEDLARISLRAGPLFINVVSEKDNSTVEGLEQGYVVCDSDKRFLLLFSFLK 273

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + ++
Sbjct: 274 RNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVS 333

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT R A  KG S+  +  N      R 
Sbjct: 334 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGAKGKGKSLMFLTPNELGFL-RY 392

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + A V +     P+ + A  +   +++++   +L     D  +      A H  + +
Sbjct: 393 LKAAKVPLNEYEFPTNKIANVQSQLEKLIRSNYYLHQTAKDGYRAYLQAYASHSLKTV 450


>gi|113866090|ref|YP_724579.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha H16]
 gi|113524866|emb|CAJ91211.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
          Length = 469

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 211/405 (52%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P    +   L++ GY  +T +Q A L   L  +D++  A+TGSGKT AFGLAL   
Sbjct: 14  FSNLPLSPTMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L              A+ + PTRELA QV +E+  L   +  + V    GG  +  +   
Sbjct: 74  LDPRRFDV------QAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGSPMRPQVDS 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAHIVVGTPGR+ DHI    L++S +  +VLDEAD MLD+GF DDI ++    PK R
Sbjct: 128 LIHGAHIVVGTPGRILDHIDRGSLDLSGINTLVLDEADRMLDMGFFDDIAYVASRCPKDR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT  P I  L+ +      +         ++ I  R   V   +R N +  +L 
Sbjct: 188 QTLLFSATYPPGIDKLS-HRFLRNPQSVKLEATHDNTTIRQRFYEVEEGERLNTVGRLLD 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+T+A      ++L    +Q +AL GEL Q+ER   L    +    V +A
Sbjct: 247 HFRPVSTLAFCNTKARCRELVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ E++ +PE  +HR GRTGRA ++G +  ++  +   R   L 
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       W+P   +  +R    +R+L  P+    + G  K+ + 
Sbjct: 367 QHHGGEFEWQP---LADLRPASNERLL-PPMVTLQMLGGRKEKIR 407



 Score = 51.5 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               +           +  G K+K     ++  L   +G  ++ IG I V    T++ V 
Sbjct: 382 RPASNERLLPPMVTLQMLGGRKEKIRPGDILGALTGEAGFTKEQIGKINVLEMSTYIAVE 441


>gi|313241110|emb|CBY33407.1| unnamed protein product [Oikopleura dioica]
          Length = 847

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 178/365 (48%), Gaps = 5/365 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   +    +   T +Q   L   +  +DV+  A+TGSGKT+ F L +   +  + +   
Sbjct: 359 VLTLIKRMKFEKPTPIQAQCLPAIMSGRDVIGIAKTGSGKTLGFVLPMLRHMEHQRE-VE 417

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ + PTRELA+Q+ ++                GG  +  +  +L+ GA I++ 
Sbjct: 418 KGEGPIAVIMTPTRELAIQITKDTRKFANHMRWRTVCVYGGTGISEQISELKRGAEIIIC 477

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D      G+  N+      VLDEAD M D+GF   +  IL+S    R++++FSA
Sbjct: 478 TPGRMIDMLAANNGRVTNLRRCTYCVLDEADRMFDMGFEPQVMHILNSVRPDRQLVLFSA 537

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T   ++  LA+      + + +  ++    D+    V++   D+   ++ +  R+  + +
Sbjct: 538 TFPRSMEALARRILTKPLEITVGGKSVVCDDVQQNVVVLNDEDKFLKLLELLGRFQESGS 597

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF           K + +  +   AL G + Q +R + +   + G + + IAT VAAR
Sbjct: 598 VIVFTHKHEVADALLKEVLKAGYPAQALHGGMDQYDRDSVINDFKKGVSNLLIATSVAAR 657

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L LV++ +  ++ E+ +HR GRTGRAG KG +   + +   + A  + +   +S
Sbjct: 658 GLDVKNLILVVNFDCPNHYEDYVHRCGRTGRAGNKGTAYTFLTEEEGKYAGDIIKALEMS 717

Query: 367 VVWEP 371
               P
Sbjct: 718 KAEVP 722


>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 516

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 129/399 (32%), Positives = 194/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GY   T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 42  LSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 101

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 102 KSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKHLRRLRT 161

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 162 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 221

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P  R+ ++FSAT+   I +L      +  R+ I ++    ++I      
Sbjct: 222 IDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLNNPERIEIVAKIESRANIAQTVHY 281

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 282 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 341

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G +
Sbjct: 342 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGTA 401

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 402 VSLVHHAEQGALKRIERFVRSPL---PVNVIEGFEPRKA 437


>gi|323447210|gb|EGB03146.1| hypothetical protein AURANDRAFT_39444 [Aureococcus anophagefferens]
          Length = 418

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + VQE  +   L+ ++VL  A+ G+GKT AF +     
Sbjct: 46  FEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIPCLEK 105

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                           L + PTRELA+Q    +  L     V   V  GG S+  +   L
Sbjct: 106 TDPSKKFI------QVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRL 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D        +     V++DEAD++L   F   +E ++     +R+
Sbjct: 160 YKPVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQ 219

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    +    + +  +   +N+  +             V    + + +  +   
Sbjct: 220 ICLFSATFPVTVKNFKEKFIHNPYEINLMDDLTLKGI-TQFYAFVEERQKVHCLHTLFTK 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +++FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 279 LEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVSS 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR GR G  G+++ +I  + +    R+  
Sbjct: 339 DLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAINLITFDDRFNLYRIES 398

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P++E
Sbjct: 399 ELATEIKPIP-PTIE 412


>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
 gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
          Length = 441

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 180/377 (47%), Gaps = 6/377 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + +AL+++GY   T +Q   +   +  +DVL SA TG+GKT AF L     
Sbjct: 6   FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 66  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVF 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF    E I   +  +R+
Sbjct: 124 NKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQ 183

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +   ++  +         S   +     +     +   +   +   +
Sbjct: 184 TLLFSATLEGELLVDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSNEHKIKLLARFI 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R +V   +++L +   +   L GE++Q +R+ A+  +++    V +
Sbjct: 244 ENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 303

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 304 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 363

Query: 360 FREANVSVVWEPAPSVE 376
            R     +       +E
Sbjct: 364 KRYTGELLKPRIIEGLE 380


>gi|207080270|ref|NP_001128971.1| probable ATP-dependent RNA helicase DDX6 [Pongo abelii]
 gi|75062071|sp|Q5RFQ5|DDX6_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX6; AltName:
           Full=DEAD box protein 6
 gi|55725069|emb|CAH89402.1| hypothetical protein [Pongo abelii]
          Length = 483

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 179/374 (47%), Gaps = 12/374 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 272 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 331 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR G +GR G  G+++ +I  + +   + + 
Sbjct: 391 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLITYDDRFNLKSIE 450

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 451 EQLGTEI--KPIPS 462


>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
 gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
          Length = 444

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 180/377 (47%), Gaps = 6/377 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + +AL+++GY   T +Q   +   +  +DVL SA TG+GKT AF L     
Sbjct: 10  FEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPALQH 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P  L + PTRELA+QV  + E L   T + +A   GGV+        
Sbjct: 70  LLDYPRR--KPGPPRILVLTPTRELAMQVAEQAEELAQFTHLSIATITGGVAYQNHGEVF 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IVV TPGRL  +I+ +  +   ++ ++ DEAD ML +GF    E I   +  +R+
Sbjct: 128 NKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQMGFGQYAEEIAAETRWRRQ 187

Query: 182 MLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT+     +   ++  +         S   +     +     +   +   +   +
Sbjct: 188 TLLFSATLEGELLMDFASRLLKDPVQFNAEPSRRERKKINQWYYHADSNEHKIKLLARFI 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF   R +V   +++L +   +   L GE++Q +R+ A+  +++    V +
Sbjct: 248 ENEQVSRGIVFVRRRENVRELSEILRKRGIRSTYLEGEMAQTQRTKAIDKLKNDVVTVLV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  V++ +L  N +  LHR GRT RAG+KG +V  +  +  +   ++
Sbjct: 308 ATDVAARGIDIDDVSHVMNFDLPYNADTYLHRVGRTARAGKKGTAVSFVEAHDYKLLGKI 367

Query: 360 FREANVSVVWEPAPSVE 376
            R     +       +E
Sbjct: 368 KRYTGELLKPRIIEGLE 384


>gi|297734151|emb|CBI15398.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 119/483 (24%), Positives = 221/483 (45%), Gaps = 18/483 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+++ G+ N+T +Q   + P L  KDVL +A+TGSGKT+AF +     L   +
Sbjct: 11  LSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHIS 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F P +    + I PTRELA+Q     + L       + + IGG +   E   L  GA+
Sbjct: 71  --FMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAKGAN 128

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +LK +++DEAD +L+  F ++++ I+   PK+R+  +F
Sbjct: 129 LLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+   +         + R             +V  + R   + + L+ +
Sbjct: 189 SATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRN 248

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +K  +VF S+  SV   +++L       + + G+  QQ+R++           + + TD
Sbjct: 249 LSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTD 308

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQRRAERLF 360
           VAARG+D+PD++ ++  +    P+  +HR GRT R  G+KG + +F+IP+ +Q    R  
Sbjct: 309 VAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQ--FLRYL 366

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V V        + A  +   ++++ +  +L+    D  +   +    H  + I   
Sbjct: 367 KAAKVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDIFNV 426

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                  +  +   +      +S+ S   +FR  +   +                   G 
Sbjct: 427 HRLDLQAVASSFCFSSPPKVNLSIDSSASKFRKKTHKVEGSRNGFSESNPYGRQR---GQ 483

Query: 476 KQK 478
             K
Sbjct: 484 DDK 486


>gi|300781219|ref|ZP_07091073.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
 gi|300532926|gb|EFK53987.1| ATP-dependent RNA helicase RhlE [Corynebacterium genitalium ATCC
           33030]
          Length = 408

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 183/367 (49%), Gaps = 6/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ I   L+++G      +QEA +   L  +DVL    TGSGKT AFGL +
Sbjct: 1   MPTFSDLGLPRPIVNVLTKQGIEEPFPIQEAAIPAVLDGRDVLGRGPTGSGKTFAFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LALL---AGSPSKPGHPRGLVLAPTRELAAQIRQRLDDPAAAAGLRVLEVVGGVNINNHI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L+   +    +DEAD+M D+GF   +  ++D++P+
Sbjct: 118 RSLAAPVDLLVATPGRAQDLINQGKLSFDSVAVTAIDEADQMADMGFLPQVRKLVDATPE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + Y  D V  + A              L+  S      +  
Sbjct: 178 NGQRLLFSATLDGDVEKLVQRYLTDPVTHSTAPAQAAVDT-MQHYQLLVGSRESRNEIVP 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        I+F  T+  V R  K L     +   L G+  Q  R+ A++   DG   V 
Sbjct: 237 LIAAREGKTIMFMRTKHGVDRQVKKLRRVGIEAQPLHGDKGQGARTRAIEGFTDGSVPVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  ++ LHR+GRT RAG  G  V ++    ++  ++
Sbjct: 297 VATDIAARGIDISDVSLVVHIDPPAEHKSYLHRAGRTARAGTSGTVVTLVMDEQRKEVDQ 356

Query: 359 LFREANV 365
           L R+A V
Sbjct: 357 LLRKAGV 363


>gi|225455822|ref|XP_002275026.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 580

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 119/483 (24%), Positives = 221/483 (45%), Gaps = 18/483 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+++ G+ N+T +Q   + P L  KDVL +A+TGSGKT+AF +     L   +
Sbjct: 99  LSEPTMKAINDMGFGNMTQIQARAIPPLLLGKDVLGAARTGSGKTLAFLIPAVELLYHIS 158

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F P +    + I PTRELA+Q     + L       + + IGG +   E   L  GA+
Sbjct: 159 --FMPRNGTGVVVICPTRELAIQTHAVAKDLLKYHTQTLGLVIGGSARRGEAERLAKGAN 216

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +LK +++DEAD +L+  F ++++ I+   PK+R+  +F
Sbjct: 217 LLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIIKLLPKERQTALF 276

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+   +         + R             +V  + R   + + L+ +
Sbjct: 277 SATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLLYSFLKRN 336

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +K  +VF S+  SV   +++L       + + G+  QQ+R++           + + TD
Sbjct: 337 LSKKVMVFFSSCNSVKYHSELLRYIQVDCLDIHGKQKQQKRTSTFFDFCKAEKGILLCTD 396

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQRRAERLF 360
           VAARG+D+PD++ ++  +    P+  +HR GRT R  G+KG + +F+IP+ +Q    R  
Sbjct: 397 VAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGKKGNALLFLIPEELQ--FLRYL 454

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V V        + A  +   ++++ +  +L+    D  +   +    H  + I   
Sbjct: 455 KAAKVPVKEYEYDVKKLANVQSHLEKLVSNNYYLNKSAKDAYRSYILAYNSHSMKDIFNV 514

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                  +  +   +      +S+ S   +FR  +   +                   G 
Sbjct: 515 HRLDLQAVASSFCFSSPPKVNLSIDSSASKFRKKTHKVEGSRNGFSESNPYGRQR---GQ 571

Query: 476 KQK 478
             K
Sbjct: 572 DDK 574


>gi|125556650|gb|EAZ02256.1| hypothetical protein OsI_24355 [Oryza sativa Indica Group]
          Length = 426

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/386 (28%), Positives = 185/386 (47%), Gaps = 21/386 (5%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   + 
Sbjct: 41  ESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L              AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R
Sbjct: 101 QQLDYA------VVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 154

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+VVGTPGR+ D +R + L   ++K  VLDEADEML  GF+D ++F+       
Sbjct: 155 ILASGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQLDFLGACFIDV 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------YRAVLV 226
            + L+     S +            +        R+  +               +   + 
Sbjct: 215 IQSLLRFMISSSSSRQDPVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEFYVNVE 274

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               + + + ++        +++F +TR  V   T  +      V A  G++ Q  R   
Sbjct: 275 KEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDII 334

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  R G +RV I TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++ 
Sbjct: 335 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN 394

Query: 347 VIPQNMQRRAERLFREANVSVVWEPA 372
            + ++ +R    + R  NV +   PA
Sbjct: 395 FVTRDDERMLFDIQRFYNVVIEELPA 420


>gi|325287711|ref|YP_004263501.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323165|gb|ADY30630.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 450

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 185/386 (47%), Gaps = 10/386 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F   N+ + +  A+ + G+   T +Q+      +  KD++  AQTG+GKT A+ L +
Sbjct: 1   MESFSDFNLKKQLHYAIDDLGFTTPTPIQKEAFPVVMSGKDMIGIAQTGTGKTFAYMLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L      FS    P  L + PTREL +QV  ++        V V    GG +++ + 
Sbjct: 61  LQDL-----AFSKQKNPRVLILVPTRELVLQVVEQINSFAKYINVRVMGVYGGTNMNTQA 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G+ I+V TPGRL D +  + L +  +K +V+DE D MLDLGFR  I  I +  P 
Sbjct: 116 QAVSQGSDIIVATPGRLYDLVLARALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPT 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVN 237
           +R+ +MFSAT++  + TL  ++  +  +V+IA       +I      +     + N +V+
Sbjct: 176 RRQNIMFSATMTDDVETLINDFFINPEKVSIAVSGTPLDNISQTCYAVPNFYTKANLLVH 235

Query: 238 I-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRA 295
           +       K  +VF + +    R    L E     +  +    +Q  R  ++    +G  
Sbjct: 236 LLKDKETYKKVLVFVANKRFADRLFNSLEEIFSDELCVIHSNKTQNYRIRSINQFDEGIN 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ + TDV ARG+DL  +  VI+ +  + PEN +HR GRTGRA  +G S+    +  +  
Sbjct: 296 RILVTTDVMARGLDLDKISHVINFDTPTFPENYMHRIGRTGRAEEQGNSILFYTEKEEEY 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRER 381
            + +    +  +     P    I + 
Sbjct: 356 KDAIEELMDYKIPTITIPESVEISKE 381


>gi|293377452|ref|ZP_06623654.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
 gi|292643970|gb|EFF62078.1| putative ATP-dependent RNA helicase DbpA [Enterococcus faecium
           PC4.1]
          Length = 425

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + A+ +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINADKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QLNRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|261823430|ref|YP_003261536.1| ATP-dependent RNA helicase RhlB [Pectobacterium wasabiae WPP163]
 gi|261607443|gb|ACX89929.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 430

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 192/387 (49%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  ANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S   + +  A + L  P
Sbjct: 376 GHGIPVSKYNSDALMNDLPAPKRLTRP 402


>gi|268565371|ref|XP_002639425.1| Hypothetical protein CBG04018 [Caenorhabditis briggsae]
 gi|187036206|emb|CAP24812.1| hypothetical protein CBG_04018 [Caenorhabditis briggsae AF16]
          Length = 393

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 191/378 (50%), Gaps = 14/378 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   L+ +DV+  AQ+G+GKT  F +++  
Sbjct: 28  TFDKMGLREELLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQ 87

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L  +           AL ++PTRELAVQ+ + +  L     V    CIGG ++  + R 
Sbjct: 88  SLDTQ------VRETQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRK 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ +  I    P   
Sbjct: 142 LDYGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGA 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++ SAT+   I  +   +  D +R+ +  +      I    V V   +     +  L 
Sbjct: 202 QVVLLSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLY 261

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                ++ +       V   T  + E  F V ++ G++ Q++R   ++  R G  RV I+
Sbjct: 262 DTLTSSSFL------KVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGNTRVLIS 315

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P + LVI+ +L +N E  +HR GR+GR GRKG+++  + Q+  R    + 
Sbjct: 316 TDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIE 375

Query: 361 REANVSVVWEPAPSVEAI 378
           +  +  +   P    + I
Sbjct: 376 QYYSTQIDEMPMNIADII 393


>gi|28897062|ref|NP_796667.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837936|ref|ZP_01990603.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|260363937|ref|ZP_05776676.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|260877980|ref|ZP_05890335.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|260896348|ref|ZP_05904844.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|260900676|ref|ZP_05909071.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|28805270|dbj|BAC58551.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748714|gb|EDM59565.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ3810]
 gi|308085198|gb|EFO34893.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090073|gb|EFO39768.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AN-5034]
 gi|308110247|gb|EFO47787.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus AQ4037]
 gi|308112560|gb|EFO50100.1| ATP-independent RNA helicase DbpA [Vibrio parahaemolyticus K5030]
 gi|328471865|gb|EGF42742.1| ATP-dependent RNA helicase DbpA [Vibrio parahaemolyticus 10329]
          Length = 459

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   + E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        AL + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD ML++GF+D ++ I++++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   K    + + S +   S   Y   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEKIAQRIMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  +  ++A+VFC+T+  V      L    F V+ + G+L Q+ER  AL    +    + 
Sbjct: 238 LLTYQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + VV    P+      +  Q+  Q  +   +I G +K+ V 
Sbjct: 358 IEEYLEMDVVPATLPA------KSNQQPYQAKMVTINIDGGKKQKVR 398



 Score = 54.2 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 24/64 (37%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               ++  G KQK     ++  L   +GI    +G I + P  ++V V         + +
Sbjct: 384 MVTINIDGGKKQKVRPGDILGCLTGKNGIPGAQVGKIHLFPVRSYVAVEKSAAKKALQII 443

Query: 526 KLDK 529
              K
Sbjct: 444 STGK 447


>gi|219119904|ref|XP_002180703.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408176|gb|EEC48111.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 589

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/495 (24%), Positives = 216/495 (43%), Gaps = 21/495 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FEN+P  +     L++ G+  +T +Q   + P L  KD++ +A+TGSGKT+AF +    
Sbjct: 99  TFENLPLSEKTKYGLNDLGFTRMTQIQSKAIPPLLTGKDLIGAAKTGSGKTLAFLIPCIE 158

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRER 118
            L     +F+  +    + I+PTRELA+Q+   L+    + K      + +GG +   E 
Sbjct: 159 LL--HKAKFTSKNGTGVIVISPTRELAMQIYGVLQELCTHGKHSQTYGLIMGGANRRTES 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G +++V TPGRL DH++        +L A+V+DEAD +L+ GF DD+  IL   P
Sbjct: 217 ERLAKGVNVIVCTPGRLLDHLQNTKAFVFRNLLALVMDEADRILEQGFEDDLRSILKLLP 276

Query: 178 KKRRMLMFSATISPAITT----LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           K+R+ ++FSAT +  +               V +   +     + ++   V      R  
Sbjct: 277 KERQTMLFSATQTKKVEDLARLSINPKNSVFVDIPSDTNLATAAGLEQGYVTCPSDKRFL 336

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+ + G   Q +R+         
Sbjct: 337 LLFTFLKKNKKKKIMVFFSSCNSVKYHAELLNYIDVPVMDIHGRQKQVKRTTTFFQFCKS 396

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNM 352
                + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R A   G ++  +    
Sbjct: 397 DIGTMLCTDVAARGLDIPRVDWIIQFDPPDDPKEYIHRVGRTARGAKGSGRALLFLTPEE 456

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + A V++     P+ + A  +    R+++   +L+    D  +   +  A H
Sbjct: 457 TGFL-RYLKAAKVTLNEYDFPTTKVANVQSQLYRLIESNYYLNRASRDAYRSYLLAYASH 515

Query: 412 DPEKI-AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSW 468
               I     L +   G+       P   ++     R      K     GS   F   + 
Sbjct: 516 SHRDIFNVHELDLQAVGVAFGFTTPPRVDLAFGKEKRKKKVDGKTARLAGSGHAFSADNP 575

Query: 469 FSLSVGSKQKAEARW 483
           +    G +  ++ R 
Sbjct: 576 Y----GKRDASDRRQ 586


>gi|147772471|emb|CAN65105.1| hypothetical protein VITISV_021046 [Vitis vinifera]
          Length = 592

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 196/419 (46%), Gaps = 18/419 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   +   +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L + 
Sbjct: 154 STFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPIL 213

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   L +   +  AV +GG+ +  + +
Sbjct: 214 HRLAEDP------FGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQ 267

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            L    H+V+ TPGR+   +          +  K +VLDEAD +LD+GF +++  +    
Sbjct: 268 TLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCL 327

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  + TL +     A         +    +  + + V  + +D  ++
Sbjct: 328 PKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLL 387

Query: 237 NI---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +I   +   G ++AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G
Sbjct: 388 HILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSG 447

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN  
Sbjct: 448 QVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDV 507

Query: 354 RRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
                +       +        E +    +   A+R+    +  D  +   K      L
Sbjct: 508 DLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKL 566


>gi|157871774|ref|XP_001684436.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68127505|emb|CAJ05468.1| putative ATP dependent DEAD-box helicase [Leishmania major strain
           Friedlin]
          Length = 389

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 183/372 (49%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + + + +   GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L  
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKQPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                           AL ++PTRELAVQ       +    G+    CIGG S   + R 
Sbjct: 78  ACDPHT------RETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRR 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G HIV GTPGR+ D IR K L ++ LK +VLDEADEML  GF+  I  I    P  +
Sbjct: 132 LESGVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQ 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +   +  +    K   +    +    E    S   Y   +    ++ + ++ +  
Sbjct: 192 IILVSATLPADVLEMTEKFMTEPTSILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELYD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VFC+TR  V +  K +    F V A+ G++ Q ER   ++  R+G +RV I 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVSAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  + LV+  +L    E  +HR GRTGR GR G+++  +  +  R    + 
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 372 QFYATQIEELPA 383


>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
          Length = 485

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 194/379 (51%), Gaps = 10/379 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 59  KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 118

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 119 QALMNKPQ------SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAI 172

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 173 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPR 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V 
Sbjct: 233 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVY 292

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  ++AIVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 293 LLNEYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q       
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412

Query: 358 RLFREANVSVVWEPAPSVE 376
           R+       +        E
Sbjct: 413 RIENALGKKLDEYKVEKEE 431


>gi|296121937|ref|YP_003629715.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296014277|gb|ADG67516.1| DEAD/DEAH box helicase domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 395

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 125/394 (31%), Positives = 199/394 (50%), Gaps = 12/394 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   +    A+++ G+   + +Q A +   L  KDV+  A+TGSGKT AF L +   
Sbjct: 8   FEDLGLSETTLAAVNKMGFATPSPIQAAFVPLALSGKDVIGQARTGSGKTAAFVLPILER 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + AE         P AL + PTREL+ Q+  E   L  K  +    C+GG ++  +  DL
Sbjct: 68  VDAEKG------YPQALVLTPTRELSQQIAEEASRLSLKHPLRSVCCVGGRNIRPQITDL 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +V+GTPGR+ D ++   L+ S LK VVLDEAD MLD+GFR DIE IL   P +R+
Sbjct: 122 KKGAQLVIGTPGRIIDLMQRGELDTSRLKMVVLDEADRMLDIGFRPDIERILRKCPTERQ 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILR 240
            L+ SAT+   +  LA+ Y  D  RV+++       + I    V V    +   ++ +L 
Sbjct: 182 TLLLSATLPAPVARLAQKYMNDPERVDVSHIGADSQNSITQFYVPVDQDRKFRTLIRVLS 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  +VF  T+       +  +  L ++  + G+LSQ  R   L   RDGR R+ IA
Sbjct: 242 QEKPQQVLVFTRTKRGAEEVYRKFSGRLPRIGFIHGDLSQNLREGVLSRFRDGRLRLLIA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR---AGRKGMSVFVIPQNMQRRAE 357
           TDV  RGID+  +  +++ ++  + ++ +HR GRTGR     + G ++  + +    +  
Sbjct: 302 TDVMGRGIDISGISHIVNYDVPMDCDDYVHRIGRTGRLSSTEKIGSAITFVTREEGDQLT 361

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
            +    N  +        E  R R   R + DP 
Sbjct: 362 NIEIRVNKELARYEIRDFETQRPRRPARHVNDPA 395


>gi|83318931|emb|CAJ38803.1| Vasa protein isoform [Platynereis dumerilii]
          Length = 732

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 191/387 (49%), Gaps = 13/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA-----S 60
           ++ + +   + +  Y   T +Q+  +   L  KD++  AQTGSGKT AF L +      +
Sbjct: 296 DLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGIIKN 355

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+     F     P A+ + PTREL  Q+  E     + T V   V  GG SV  + R+
Sbjct: 356 DLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARE 415

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILDSS 176
           L+ GAH+VVGTPGRL D I    +N+S +K ++LDEAD MLD+GF  +I           
Sbjct: 416 LEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPE 475

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ LMFSAT +  I  LAK +  + V V +      +SDI      V   ++   +V
Sbjct: 476 KGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLV 535

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL   G    +VF  T+ S       L++  +   ++ G+  Q+ER  AL   + GRA 
Sbjct: 536 EILNQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAP 595

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQ 353
           + IAT VAARG+D+P ++ VI+ +L S  +  +HR GRTGR G  G +      +    +
Sbjct: 596 ILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDK 655

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRE 380
             A  L +           P +E I E
Sbjct: 656 ELARSLVKTLG-DAQQVVPPWLEEIAE 681


>gi|70663480|emb|CAJ15139.1| vasa homlogue [Platynereis dumerilii]
          Length = 712

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 191/387 (49%), Gaps = 13/387 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA-----S 60
           ++ + +   + +  Y   T +Q+  +   L  KD++  AQTGSGKT AF L +      +
Sbjct: 276 DLSETVRSNVRKAKYDRPTPIQKWAIPIVLSGKDLMGCAQTGSGKTAAFLLPVLTGIIKN 335

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+     F     P A+ + PTREL  Q+  E     + T V   V  GG SV  + R+
Sbjct: 336 DLIEGGSGFGGPQYPAAIIVGPTRELVNQIYLEARKFASSTCVRPVVVYGGTSVGYQARE 395

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILDSS 176
           L+ GAH+VVGTPGRL D I    +N+S +K ++LDEAD MLD+GF  +I           
Sbjct: 396 LEKGAHVVVGTPGRLLDFIGKGKINLSKVKYLILDEADRMLDMGFEPEIRKLVTTFDMPE 455

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R+ LMFSAT +  I  LAK +  + V V +      +SDI      V   ++   +V
Sbjct: 456 KGQRQTLMFSATFAAEIQQLAKEFLSEYVFVTVGRVGGANSDITQEVHQVTKYEKREKLV 515

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL   G    +VF  T+ S       L++  +   ++ G+  Q+ER  AL   + GRA 
Sbjct: 516 EILNQAGTDRTLVFLETKRSADFLAAYLSQEQYPATSIHGDRLQREREEALLDFKTGRAP 575

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---MQ 353
           + IAT VAARG+D+P ++ VI+ +L S  +  +HR GRTGR G  G +      +    +
Sbjct: 576 ILIATSVAARGLDIPGVKHVINYDLPSGIDEYVHRIGRTGRCGNLGKATSFFDPDVNQDK 635

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRE 380
             A  L +           P +E I E
Sbjct: 636 ELARSLVKTLG-DAQQVVPPWLEEIAE 661


>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 576

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 180/380 (47%), Gaps = 13/380 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F +   P+ + +A+   GY + T +Q       L+  D++  A+TGSGKTV +    
Sbjct: 124 MQRFTDWEWPRELMDAVDRAGYKSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPG 183

Query: 59  ASTLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              +   +   F     P    +APTRELA Q+  E        G+      GG     +
Sbjct: 184 IMHIRGRQGPSFPRPVGPTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQ 243

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L++G  I + TPGRL D +    +N+     VVLDEAD MLD+GF   I  IL  +P
Sbjct: 244 LRELRHGPQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAP 303

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDN-- 233
            +R+ L F+AT   A+  +A     + ++VNI   +    + DI     +     +    
Sbjct: 304 AQRQTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKDITQVVEVCGGFQKQQRL 363

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             V          AIVFC T+    +  + +         + G+  Q+ER   L   R G
Sbjct: 364 MEVLRNPPTQPLKAIVFCGTKKMCDQIGRSMGGMG---AVIHGDKEQRERDWILNQFRSG 420

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
           R  V +ATDVAARG+D+ ++ +V++ +  +  E+ +HR GRTGRAG KG +   I     
Sbjct: 421 RVPVLVATDVAARGLDIKEVNMVVNFDFPNQIEDYVHRIGRTGRAGNKGWAHSFIEPGEG 480

Query: 351 NMQRRAERLFREANVSVVWE 370
           NM R+   + R+A   V  E
Sbjct: 481 NMARKLIPILRDAGQDVPAE 500


>gi|300175700|emb|CBK21243.2| unnamed protein product [Blastocystis hominis]
          Length = 485

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 210/383 (54%), Gaps = 12/383 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLRE---KDVLVSAQTGSGKTVAFGL 56
           K F +  +   + +A+   G+ + +S+Q  +L   L+E   KD++  A+TGSGKT AF +
Sbjct: 52  KTFSDYGVCDTLCQAIDNLGWKHPSSIQRDVLKIALQEDQNKDIIAIAETGSGKTGAFAI 111

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L+    R        AL + PTRELA Q+  + E L +  G+  AV +GG+ + +
Sbjct: 112 PIIQRLIDNPQRM------YALIVTPTRELAFQISEQFEALGSSVGLKTAVIVGGIDMVQ 165

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +   L    H+VVGTPGRL DH+      +++ +K +VLDEAD  L + F + I+ IL  
Sbjct: 166 QALALARKPHVVVGTPGRLVDHLENTKGFSLNTMKYLVLDEADRCLSMDFEEAIDKILSC 225

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK+R   +FSAT++  +  L +   +D V++ ++S+ +  S +  + + +    ++  +
Sbjct: 226 FPKERVTYLFSATMTQKVVKLQRASLQDPVKIQVSSKYQTVSTLIQQYLFIPAKYKECYL 285

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+     K+ I+F ST +S    T  L    F+ V ++G LSQ +R  AL   ++G  
Sbjct: 286 AFIMNEFRGKSTILFVSTCSSSQLLTLFLRNLGFKAVCINGNLSQVKRLGALNKFKEGAR 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + IATDVA+RG+D+P+++LV++ ++  N ++ +HR GRT RAG+ G ++  + Q     
Sbjct: 346 NILIATDVASRGLDIPEVDLVVNYDIPGNGKDYVHRVGRTARAGKSGRAITFVTQYDVES 405

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            +R+ +     +   P    EA+
Sbjct: 406 YQRIEKLIEKRLDAYPCSENEAL 428


>gi|157128260|ref|XP_001661370.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882257|gb|EAT46482.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 639

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 10/377 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I +      +   T +Q       +  +D++  A+TGSGKT+++ L    
Sbjct: 88  TFEEVGFPAEIADEWRYAEFTTPTPIQSQGWPIAMSGRDMVGIAKTGSGKTLSYLLPALM 147

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+AL +APTRELA Q+ +  +       +      GG +  ++  D
Sbjct: 148 HID-QQSRLRRGDGPIALILAPTRELAQQIKQVTDDFGRAMKIKNTCLFGGGAKRQQGDD 206

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++      
Sbjct: 207 LKYGVEIVIATPGRLIDFLSSEHTNLRRCSYLVLDEADRMLDMGFEPQIRAIIEQIRPDH 266

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIV 236
           + LM+SAT   A++ L K+Y KD +++N+ S     +    + + V        + + ++
Sbjct: 267 QTLMWSATWPDAVSRLVKDYLKDYIQINVGSLKLAANHNILQIIDVCQEHEKEAKLSILL 326

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+F  T+  V   T+ +    +  + + G+ SQ+ER   L   R G+  
Sbjct: 327 REIMAEKECKTIIFIETKKRVDDITRKVLRDGWPAMCIHGDKSQREREYTLNSFRSGKNP 386

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+ D++ VI+ +  +  E+ +HR GRTGR+   G +      +   RA
Sbjct: 387 ILIATDVAARGLDVDDVKFVINFDYPTTSEDYIHRIGRTGRSNNTGTAYTFFTPDNAGRA 446

Query: 357 ERL---FREANVSVVWE 370
             L    +EA   +  +
Sbjct: 447 RELIDVLKEAKQVINPK 463


>gi|85060366|ref|YP_456068.1| ATP-dependent RNA helicase RhlB [Sodalis glossinidius str.
           'morsitans']
 gi|123518632|sp|Q2NQB2|RHLB_SODGM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84780886|dbj|BAE75663.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
          Length = 415

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/372 (31%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I E L  +G+ N T +Q   L   L  KDV   AQTG+GKT+AF  A  
Sbjct: 9   KKFSDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATF 68

Query: 60  STLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL          + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ 
Sbjct: 69  HHLLTHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEPLAQATGLKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  I+VGT GRL D+ +   +N+S ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLEAGVDILVGTTGRLIDYTKQNYVNMSAIQVVVLDEADRMFDLGFIKDIRWLFRRMPA 188

Query: 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              R  ++FSAT+S  +  LA  +  +A  V +    +    I       +  ++   + 
Sbjct: 189 AAGRLNMLFSATLSYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        I+F +T+         LA    +V  L+G++SQ+ R   L+    G   
Sbjct: 249 TLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVSQKRRLRILEKFTQGALD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSISLACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +       + 
Sbjct: 369 TAIESYIGHQIP 380


>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
 gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
          Length = 423

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 189/365 (51%), Gaps = 7/365 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   +   + +A ++RGY   T +Q   +   L  +DVL +AQTG+GKT AF L +  
Sbjct: 2   TFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +       L + PTRELA QV   +        +  AV  GGV    +   
Sbjct: 62  RLAFVGG--ARGRQVRTLVLTPTRELASQVHDSVLTYGRYLDLRSAVVFGGVRAEPQIEA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D  +   ++ S L+ +VLDEAD MLD+GF  D+  I++  P  R
Sbjct: 120 LEPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDEADRMLDMGFIHDMRRIIEMLPINR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + LMFSAT S  I +LA  Y  + V V++A  N     ++ +A  V    + + ++++ R
Sbjct: 180 QTLMFSATFSQEIRSLAARYLVEPVSVDVAPANSTTELVEQKAYAVDPEHKSDLLMHLFR 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VFC T+   ++ +K L    F    + G  SQ  R  AL   + G  ++ IA
Sbjct: 240 EGEWGQALVFCRTKHGANQLSKALLNAGFAAAPIHGNKSQNARQRALDAFKKGDLQLLIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAE 357
           TD+AARG+D+  L  V++ +L S P++ +HR GRTGRAG  G S  ++  + +   R  E
Sbjct: 300 TDLAARGLDIDQLPEVVNFDLPSVPQDYVHRIGRTGRAGATGRSHSLVSADDEPLLRAIE 359

Query: 358 RLFRE 362
            L R 
Sbjct: 360 VLIRR 364


>gi|330804668|ref|XP_003290314.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
 gi|325079564|gb|EGC33158.1| hypothetical protein DICPUDRAFT_95112 [Dictyostelium purpureum]
          Length = 706

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 176/380 (46%), Gaps = 17/380 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  VI   +    Y   T VQ++ L    + +D++  AQTGSGKT AF L + S +L +
Sbjct: 238 DLGDVILSNIKYAKYTKPTPVQKSALPIIFKNRDLMACAQTGSGKTAAFLLPIISGILLD 297

Query: 66  NDRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                PAS         AP AL +APTRELA Q+  E       + +   V  GG  V  
Sbjct: 298 GAPEPPASYKPGVPRAAAPRALVLAPTRELAQQIYNEANKFSYGSPIQSVVIYGGAEVFN 357

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G  I+V T GRL D +    + +S +K +VLDEAD MLD+GF   I  I+   
Sbjct: 358 QINELDKGVDILVATTGRLVDLLLRGRVTLSKIKYLVLDEADRMLDMGFEPQIRQIIGDF 417

Query: 177 PKKRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                    +   S       +   +                  +I  R   V+  ++++
Sbjct: 418 DMPGSRDRQTLMFSATFPKQIQALASDFLSNYIFLKVGVVGTTQNITQRIEYVSEEEKNS 477

Query: 234 AIVNILRYHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +++ +       A+  +F  T+ S    T  L    F    + G+L+Q ER NAL    
Sbjct: 478 YLLDYISGLNIDGALTLIFVETKRSCDTLTFFLNNRGFPATCIHGDLTQSERENALHSFS 537

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             +    +ATD+A+RG+ +P++ +VI+ +L ++    +HR GRTGRAG+KG+S+    + 
Sbjct: 538 SFQTPFLVATDIASRGLHIPNVMVVINYDLPTDVHIYVHRIGRTGRAGKKGLSISFFNEK 597

Query: 352 MQ---RRAERLFREANVSVV 368
            +       +L + +N  + 
Sbjct: 598 NKPVGGELLKLLKASNQEIP 617


>gi|146092052|ref|XP_001470194.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134084988|emb|CAM69387.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322500494|emb|CBZ35571.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 389

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 184/372 (49%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + + + +   GY   T++Q+  + P L+ +DV+  A +G+GKT AF + L  
Sbjct: 18  TFEAMGLKEDLLKGMYSFGYKKPTAIQKRFIMPFLKGRDVIAQASSGTGKTSAFCVCLLQ 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                           AL ++PTRELAVQ       +    G+    CIGG S   + R 
Sbjct: 78  ACDPHT------RETQALILSPTRELAVQTQDLCNNIGHHMGLTAYACIGGKSTEEDIRR 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G HIV GTPGR+ D IR K L ++ LK +VLDEADEML  GF+  I  I    P  +
Sbjct: 132 LESGVHIVSGTPGRVFDMIRRKSLRVNGLKTLVLDEADEMLGKGFKAQIHDIYRMVPPLQ 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +   +  +    K   + A  +    E    S   Y   +    ++ + ++ +  
Sbjct: 192 IILVSATLPADVLEMTEKFMTEPASILVKRDEITVDSVKQYFVSVDEEKNKFDVLMELYD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A+VFC+TR  V +  K +    F V A+ G++ Q ER   ++  R+G +RV I 
Sbjct: 252 SLTIAHAVVFCNTRKKVEQLAKKMTREKFAVTAMHGDMPQAERDEIMRQFRNGHSRVLIT 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  + LV+  +L    E  +HR GRTGR GR G+++  +  +  R    + 
Sbjct: 312 TDLWARGIDVERVSLVLSYDLPLAREQYIHRIGRTGRMGRTGLAITFVRHDELRLLRDIE 371

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 372 QFYATQIEELPA 383


>gi|78485359|ref|YP_391284.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78363645|gb|ABB41610.1| DEAD/DEAH box helicase family protein [Thiomicrospira crunogena
           XCL-2]
          Length = 393

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 187/376 (49%), Gaps = 6/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+SERGY   T +Q+  +   L  KD++ +AQTG+GKT +F L L   L  +N
Sbjct: 8   LSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTGKTASFVLPLLEKLNTDN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PTRELA+QV   +        +      GG  +  +++ L  G  
Sbjct: 68  AI--RGRSIRALILVPTRELAMQVETNVVDYAKHLNLSSMAAYGGTDIDAQKQRLMQGID 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + L    L+ +VLDEAD+MLD+GF DD+  I D  P +R+ L+FS
Sbjct: 126 ILVATPGRLLDLAYQRALFFDDLEFLVLDEADKMLDMGFIDDLYKITDRLPHQRQSLLFS 185

Query: 187 ATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT++ A+    A     DA  ++I+ +N+    I    + V    +   + +++      
Sbjct: 186 ATLTEAVRYLAADTVSDDATEISISPQNKTTPKIKQWLITVDKDTKSALLSHLINEQHWD 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F   + S ++  + L +      ++    SQ  R   L   + G+ +  IAT +AA
Sbjct: 246 QALIFVEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKFLIATGIAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFRE 362
           RGID+ +L  V++ +L    E  +HR GRTGRAG  G ++ ++ ++  +     E L   
Sbjct: 306 RGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSKDDFKNLCAIESLLGH 365

Query: 363 ANVSVVWEPAPSVEAI 378
               +     P  + +
Sbjct: 366 LIERIEIAGFPVKKIV 381


>gi|313619263|gb|EFR91012.1| ATP-dependent RNA helicase DbpA [Listeria innocua FSL S4-378]
          Length = 435

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 139/506 (27%), Positives = 229/506 (45%), Gaps = 74/506 (14%)

Query: 37  EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
            +D++  +QTGSGKT AF + +A  ++ E ++      P AL I PTRELA+QV  E   
Sbjct: 1   GEDIVAKSQTGSGKTAAFAIPIAEQVVWEENK------PQALIIVPTRELAMQVKTECTN 54

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +     +  A   G     +++ +L    HIVVGTPGRL DHI    LN+  +  +VLDE
Sbjct: 55  IGRFKRIKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDE 114

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
            DEML +GF D +E IL   PK+R+ L FSAT+   +  L K YQ + + + +ASE    
Sbjct: 115 VDEMLSMGFIDQVEDILSRLPKQRQNLFFSATLPEEMQDLIKRYQDNPMVIEMASEKTNP 174

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
                        +++  + ++L      +AI+FC+T+  V   T +L         + G
Sbjct: 175 IFHVEMQT----DNKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLDVKA---SKIHG 227

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
            L Q++R  A+   + G++R  IATDVA RGID+ ++ LVI+ +L    EN +HR GRTG
Sbjct: 228 GLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTG 287

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           RAG+ G ++  +  N       +    N+++  +  P++  ++              +  
Sbjct: 288 RAGKSGKAISFVKTNENPLLRDIEEMLNITIEKKRKPTIIEVK-------------ANEE 334

Query: 397 QGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              +K+     + K   EK+    ++++  G                             
Sbjct: 335 AFRKKQQKRPTIKKARGEKLNKNIMKLYFNG----------------------------- 365

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD 516
                            G K+K  A   +  + +  GI  + IG I ++  ++FVE+   
Sbjct: 366 -----------------GKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNG 408

Query: 517 GVDLLRRTVKLD--KGIQLKYLGGEK 540
               +   ++    KG +LK     K
Sbjct: 409 KGPAVLEMMRSRKVKGRRLKVNEARK 434


>gi|223590217|sp|A5DID7|HAS1_PICGU RecName: Full=ATP-dependent RNA helicase HAS1
 gi|190346774|gb|EDK38940.2| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/417 (27%), Positives = 198/417 (47%), Gaps = 12/417 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   +    A+ + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +     
Sbjct: 107 FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + +F P +    + ++PTRELA+Q+      L A     + + IGG +  +E   L
Sbjct: 167 LY--SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D+++ I+   P   
Sbjct: 225 MKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDE 284

Query: 181 RMLMFSATISPAITTLAKNYQ----KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +                     + V   +E      ++   V      R   + 
Sbjct: 285 RQSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLF 344

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + LR +  K  IVF S+   V  F ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 345 SFLRRNIKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 404

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
           + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  G KG S+  +  +    
Sbjct: 405 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGF 464

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R  + ANV +     P+ + A  +    ++++   +L     D  +      A H
Sbjct: 465 L-RYLKAANVPLNEYEFPTNKIANIQSQLTKLIKGNYWLHQSAKDGYRAYLQAYASH 520


>gi|146418687|ref|XP_001485309.1| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 569

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/417 (27%), Positives = 198/417 (47%), Gaps = 12/417 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   +    A+ + G+  +T VQE  + P L  +DVL +A+TGSGKT+AF +     
Sbjct: 107 FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + +F P +    + ++PTRELA+Q+      L A     + + IGG +  +E   L
Sbjct: 167 LY--SLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRRQEADKL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D+++ I+   P   
Sbjct: 225 MKGVNLLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMKQIIKVLPSDE 284

Query: 181 RMLMFSATISPAITTLAKNYQ----KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +                     + V   +E      ++   V      R   + 
Sbjct: 285 RQSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQGYVTCDSDMRFLLLF 344

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + LR +  K  IVF S+   V  F ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 345 SFLRRNIKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 404

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
           + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  G KG S+  +  +    
Sbjct: 405 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGKGKSLMFLTPSELGF 464

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R  + ANV +     P+ + A  +    ++++   +L     D  +      A H
Sbjct: 465 L-RYLKAANVPLNEYEFPTNKIANIQSQLTKLIKGNYWLHQSAKDGYRAYLQAYASH 520


>gi|71279863|ref|YP_269911.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
 gi|71145603|gb|AAZ26076.1| putative ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea
           34H]
          Length = 448

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 200/445 (44%), Gaps = 12/445 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   G+   T +Q+  +   +   D++ S++TGSGKT+AF +     L    
Sbjct: 8   LDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQRL--SK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R      P  + + PTRELA QV  +L    A T     + +GG + + + + LQ    
Sbjct: 66  NRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQKEPE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD---DIEFILDSSPKKRRML 183
            +V TPGRL DH+     +++ L+ ++LDEAD MLDLGF      I    D   ++  + 
Sbjct: 126 FIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQTLLF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   K       A  +          +   L+ ++  + + L    
Sbjct: 186 SATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFLVTEK 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           ++  I+F +TR+   R  K+L E     VALSGEL+Q +R+  ++    G+ ++ + TD+
Sbjct: 246 SQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHKILVTTDL 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+DL ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++  N     + +    
Sbjct: 306 ASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSLKNVEAFL 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-----AKHDPEKIAA 418
              + +     ++   +    +  +      S+  D+K + +           D E   A
Sbjct: 366 QQKISFTKVEGIKVKFKGLKPKKEKAVKAKVSVAKDKKAVSNKPRKVIKKTFLDIED--A 423

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGR 443
           G ++I +     P++I   +     
Sbjct: 424 GAMKIIKRKKLTPDQIEDATKKEQD 448


>gi|3047117|gb|AAC13628.1| similar to ATP-dependent RNA helicases [Arabidopsis thaliana]
 gi|7267405|emb|CAB80875.1| putative RNA helicase [Arabidopsis thaliana]
          Length = 499

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 164/377 (43%), Gaps = 15/377 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N+                        +  + L     + V V  GG S+  +   L
Sbjct: 193 IDQDNNVIQGNCVL------------DHTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRL 240

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D  +     +     +V+DEAD++L   F+  +E ++   P+ R+
Sbjct: 241 YQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQ 300

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LMFSAT    +      +  +   +N+  E             V    + + +  +   
Sbjct: 301 ILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGI-TQFYAFVEERQKIHCLNTLFSK 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R+G  R  + T
Sbjct: 360 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G++V +I    +    R+ +
Sbjct: 420 DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 479

Query: 362 EANVSVVWEPAPSVEAI 378
           E    +   P    +AI
Sbjct: 480 ELGTEIKQIPPHIDQAI 496


>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
 gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 420

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 188/385 (48%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    R+S  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRYSGQA--RVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 KGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +          +          R+     ++ +        +   + ++L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKDHKIALLCHLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R ++ +
Sbjct: 361 ERYIEQPLKRRI---IEELRPKNKE 382


>gi|320583085|gb|EFW97301.1| ATP-dependent RNA helicase DED1 [Pichia angusta DL-1]
          Length = 2471

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 20/382 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ E + +  +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 142 LDPLLVENIKQARFTKPTPVQKYSIPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKHG 201

Query: 67  DRFS---------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              S           + P AL +APTREL  Q+  E      ++ V   V  GG  V+ +
Sbjct: 202 PTESSQTDNAFDRRKAHPTALVLAPTRELVSQIYEEARKFSYRSWVRPVVVYGGAEVYLQ 261

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  ++V TPGRL D +    +++ ++K +VLDEAD MLD+GF   I  I+    
Sbjct: 262 MDQLKQGCDLLVATPGRLNDLLERGKISLKNIKYLVLDEADRMLDMGFEIQIRHIIQGCD 321

Query: 178 KKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                     MFSAT    I  +AK++  + + +++        +I  R + V   ++ +
Sbjct: 322 MPPPGERQTLMFSATFPKEIQLMAKDFLHNYIFLSVGRVGSTSENITQRILYVEDDEKKS 381

Query: 234 AIVNILRYHGAKNA----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++++IL       A    ++F  T+      +  L    F   ++ G+ SQ ER  AL+ 
Sbjct: 382 SLLDILTSTEDTLANGLTLIFVETKKMADILSDFLINQDFPATSIHGDRSQYERERALES 441

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            R GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++   + 
Sbjct: 442 FRTGRTPILVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTGVATAFVN 501

Query: 349 --PQNMQRRAERLFREANVSVV 368
              +N+ +    +  EAN  V 
Sbjct: 502 RGNKNVVKDLIEILSEANQEVP 523


>gi|227497408|ref|ZP_03927640.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833084|gb|EEH65467.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 557

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 195/383 (50%), Gaps = 12/383 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+ I +AL+++G ++   +Q   L   L  +DV+  A+TG+GKT+ FG+ L
Sbjct: 60  KTFADFGVEPE-ISQALADKGIIHPFPIQALTLPVALDGRDVIGQAKTGTGKTLGFGIPL 118

Query: 59  ASTLL---AENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               L    E     PAS  P AL + PTRELA QV  EL    AK  V +    GG + 
Sbjct: 119 LMDTLGPGEEGWDEDPASGSPQALVVLPTRELAKQVATELAQAAAKRTVRIVQVYGGRAY 178

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ GA +VVGTPGRL D +    L++ H+  VVLDEADEMLDLGF  D+E IL 
Sbjct: 179 EPQIEALEKGAEVVVGTPGRLIDLMERGVLSLEHVTTVVLDEADEMLDLGFLPDVEKILA 238

Query: 175 SSPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            +   R+ ++FSAT+  A+        +        +   E+   + +          ++
Sbjct: 239 RTRPDRQTMLFSATMPGAVVALARRYMSKPTHIRAQDPGDESMTVTSVKQVVYRTHALNK 298

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL+  G    I+F  T+ + +R  + L    F   AL G+L Q  R  AL+  R
Sbjct: 299 VEVVSRILQARGRGRTIIFTRTKRTAARVAEDLGSRGFATAALHGDLGQGAREQALRAFR 358

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  +
Sbjct: 359 HGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYVHRIGRTGRAGHSGTAVTFVDWD 418

Query: 352 MQRRAERLFREANVSVVWEPAPS 374
              R   + +   + V  EP  +
Sbjct: 419 DVPRWRLIAKALGLPV-EEPVET 440


>gi|225462242|ref|XP_002263207.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 582

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 196/419 (46%), Gaps = 18/419 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   +   +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L + 
Sbjct: 144 STFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPIL 203

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   L +   +  AV +GG+ +  + +
Sbjct: 204 HRLAEDP------FGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQ 257

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            L    H+V+ TPGR+   +          +  K +VLDEAD +LD+GF +++  +    
Sbjct: 258 TLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCL 317

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  + TL +     A         +    +  + + V  + +D  ++
Sbjct: 318 PKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLL 377

Query: 237 NI---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +I   +   G ++AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G
Sbjct: 378 HILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSG 437

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN  
Sbjct: 438 QVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDV 497

Query: 354 RRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
                +       +        E +    +   A+R+    +  D  +   K      L
Sbjct: 498 DLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKL 556


>gi|317138177|ref|XP_001816731.2| ATP-dependent RNA helicase has1 [Aspergillus oryzae RIB40]
 gi|91206843|sp|Q2UUN6|HAS1_ASPOR RecName: Full=ATP-dependent RNA helicase has1
          Length = 596

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 216/473 (45%), Gaps = 15/473 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +   G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 126 LSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEML--SA 183

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +   A+ ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +
Sbjct: 184 LRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVN 243

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +L+ +++DEAD +L++GF D++  I    P + R  M 
Sbjct: 244 LLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSENRQTML 303

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 304 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 363

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 364 NLKKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 423

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +     + L 
Sbjct: 424 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFLQPSEVGFLKHL- 482

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +   
Sbjct: 483 KEARVPVVEFDFPTQKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSLRSVFDV 542

Query: 417 -AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +++ +  G   P  I      S +D+     R +    GS+   K + 
Sbjct: 543 HKLDLVKVSKGFGFSTPPRIDIQLGSSLKDKPPQGRRNYGSQPGSKFKRKHND 595


>gi|83764585|dbj|BAE54729.1| unnamed protein product [Aspergillus oryzae]
          Length = 531

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 216/473 (45%), Gaps = 15/473 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +   G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 61  LSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEML--SA 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +   A+ ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +
Sbjct: 119 LRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVN 178

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +L+ +++DEAD +L++GF D++  I    P + R  M 
Sbjct: 179 LLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFEDEMRQIAKILPSENRQTML 238

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   E+     ++   V+     R   + + L+ 
Sbjct: 239 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 298

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + +    I T
Sbjct: 299 NLKKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 358

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +     + L 
Sbjct: 359 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFLQPSEVGFLKHL- 417

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           +EA V VV    P+ + +  +   ++++    +L+    +  +      A H    +   
Sbjct: 418 KEARVPVVEFDFPTQKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYASHSLRSVFDV 477

Query: 417 -AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                +++ +  G   P  I      S +D+     R +    GS+   K + 
Sbjct: 478 HKLDLVKVSKGFGFSTPPRIDIQLGSSLKDKPPQGRRNYGSQPGSKFKRKHND 530


>gi|242032643|ref|XP_002463716.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
 gi|241917570|gb|EER90714.1| hypothetical protein SORBIDRAFT_01g004730 [Sorghum bicolor]
          Length = 623

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 121/499 (24%), Positives = 213/499 (42%), Gaps = 35/499 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F  +P  ++  +A+ E  Y +LT +Q   +   L  KDV+ +A+TGSGKT+AF +   
Sbjct: 127 KLFSELPISELTAKAIREMNYTHLTQIQARSIPHLLEGKDVMGAAKTGSGKTLAFLIPAI 186

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     RFS  +    + + PTRELA+Q     + L       +   IGG +   E  
Sbjct: 187 ELLYHL--RFSSRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNNRRSEAD 244

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH    K      LK +V+DEAD +L+  F +D++ I    P+
Sbjct: 245 QLAKGVNLLVATPGRLLDHLQNTKSFIYKRLKCLVIDEADRILEQNFEEDMKQIFKRLPQ 304

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---------DYRAVLVALS 229
            R+ ++FSAT +P +   AK   +               D               +++  
Sbjct: 305 NRQTVLFSATQTPEVEKFAKLSFEKNEESKEKPVYVGVDDDKSKATVEGLQQGYCVISSE 364

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            R   +   L+    K  +VF S+  SV    ++L         + G+  QQ+R+     
Sbjct: 365 KRFLVLYAFLKKKQNKKIMVFFSSCNSVKFHAELLNFLGIDCSDIHGKQKQQKRTTTFFS 424

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVI 348
                  + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R  + KG ++  +
Sbjct: 425 FCKAEKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSALLFL 484

Query: 349 PQNMQRRAERLFREANVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
                +    L + A V++          P++++      + I+ +  FL+    +  + 
Sbjct: 485 LPEELKFLIYL-KAAKVTLTEYEFNQKNVPNLQS----HLENIVGENYFLNQSAKEAYRS 539

Query: 404 VDVLLAKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
             +    H  + I         ++  +          + L S   + R   R  +V GG 
Sbjct: 540 YVLAYDSHSMKDIFNVHQLDLQKVAASFCFRNPPKVNLDLDSSAAKHRKKMR--RVDGGK 597

Query: 460 RDNFKGSSWFSLSVGSKQK 478
           R      + +    G K K
Sbjct: 598 RHGISALNPY----GRKDK 612


>gi|238794287|ref|ZP_04637900.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
 gi|238726371|gb|EEQ17912.1| ATP-dependent RNA helicase rhlB [Yersinia intermedia ATCC 29909]
          Length = 428

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALENKGFHNCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|257068313|ref|YP_003154568.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256559131|gb|ACU84978.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 582

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 131/375 (34%), Positives = 191/375 (50%), Gaps = 8/375 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +      I EAL+ +G      +Q   L   LR +D++  A+TG+GKT+ FG+ L  
Sbjct: 32  TFADFDVRTDIVEALAAKGITTPFPIQSLTLPVALRGRDIIGQAKTGTGKTLGFGIPLLQ 91

Query: 61  TLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             +     N    P   P AL + PTRELAVQV  +LE   AK  + +    GG +   +
Sbjct: 92  NSVAPGEPNPADRPIGTPQALVVLPTRELAVQVAHDLETASAKRPIRILTVYGGRAYEPQ 151

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  +VVGTPGRL D +R K L++S ++  VLDEADEMLDLGF +DIE +L + P
Sbjct: 152 IEALEKGVEVVVGTPGRLIDLMRQKYLDLSQVRTAVLDEADEMLDLGFLEDIEKLLQAVP 211

Query: 178 KKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            KR+ ++FSAT+   I                 +   E+R  +DI          D+   
Sbjct: 212 VKRQTMLFSATMPGPIMALARRFMKQPTHIRAHDPGDESRTKADIKQVVYRAHQLDKIEV 271

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL+  G   +I+F  T+    R    LA+  F    L G+L Q  R  AL+  R G+
Sbjct: 272 MARILQARGRGLSIIFMRTKRQADRVAGDLADRGFAAAPLHGDLGQGAREQALRAFRSGK 331

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARGID+ D+  V++     + +  LHR+GRTGRAG+KG ++  +      
Sbjct: 332 IDVLVATDVAARGIDVTDVTHVVNWNCPDDDKTYLHRTGRTGRAGKKGTAITFVDWEDLA 391

Query: 355 RAERLFREANVSVVW 369
           R   + R+  +    
Sbjct: 392 RWALIARQLGLESTE 406


>gi|225562366|gb|EEH10645.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus G186AR]
          Length = 694

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 184/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 202 ITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 261

Query: 59  A-STLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
              +L         A          P AL + PTREL  Q+  E      +T +   V  
Sbjct: 262 LSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 321

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    ++++H++ +VLDEAD MLD+GF   I
Sbjct: 322 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQI 381

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAV 224
             I+  S    + +  +   S       +   ++ ++ +I        +   +       
Sbjct: 382 RRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVE 441

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             +  D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 442 CESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 501

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 502 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIS 561

Query: 345 VFVIPQN----MQRRAERLFREANVSVV 368
                ++    + R    L ++AN  V 
Sbjct: 562 TAFFSRSKNFKIARSLVDLLKDANQEVP 589


>gi|170679910|ref|YP_001746099.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
 gi|226739537|sp|B1LLV3|RHLB_ECOSM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|170517628|gb|ACB15806.1| ATP-dependent RNA helicase RhlB [Escherichia coli SMS-3-5]
          Length = 421

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|227875859|ref|ZP_03993985.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269977494|ref|ZP_06184466.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307700011|ref|ZP_07637060.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
 gi|227843607|gb|EEJ53790.1| ATP-dependent RNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|269934410|gb|EEZ90972.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris 28-1]
 gi|307614772|gb|EFN93992.1| putative DEAD-box ATP-dependent RNA helicase CshA [Mobiluncus
           mulieris FB024-16]
          Length = 523

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 217/490 (44%), Gaps = 34/490 (6%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+++  AL+++G ++   +Q   L   +   D++  A+TG+GKT+ F + +
Sbjct: 32  KTFSDFGVEPEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPI 90

Query: 59  ASTLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              ++   D          AP AL + PTRELA QV  E+    +     +    GGV  
Sbjct: 91  LHDIIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGF 150

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L++G  +VVGTPGRL D ++   L +  ++ +VLDEADEMLD+GF  D+E ++ 
Sbjct: 151 DSQIQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIA 210

Query: 175 SSPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           ++P +R  ++FSAT+   +                 + + +++    +   A  V   ++
Sbjct: 211 ATPPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNK 270

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +  +  IL+       I+F  T+ S  R    L    F   A+ G+L+Q  R  AL+  R
Sbjct: 271 EEVVARILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFR 330

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG  G +V  +   
Sbjct: 331 HGKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWE 390

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R                      +  R  +  L++P   ++         D+ +   
Sbjct: 391 SVTRWR--------------------VINRALELGLENP--TETYHTSAHLYADLNIPID 428

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            P  +     +       A E++   SL + R+  R  +R          +    S    
Sbjct: 429 TPGYLPRSLRKRAGLNAEALEDLGGDSLGASRNGHRHKNRDHHKNRKRPTDKNAKSSHRA 488

Query: 472 -SVGSKQKAE 480
              G K  A+
Sbjct: 489 KDSGKKDGAK 498


>gi|297736137|emb|CBI24175.3| unnamed protein product [Vitis vinifera]
          Length = 489

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 196/419 (46%), Gaps = 18/419 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   +   +A  E G    T VQ   +   L   DVL  AQTGSGKT AF L + 
Sbjct: 51  STFADLGLAEWAVQACKELGMRRPTPVQHHCIPRILAGDDVLGLAQTGSGKTAAFALPIL 110

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   L +   +  AV +GG+ +  + +
Sbjct: 111 HRLAEDP------FGVFALVVTPTRELAYQLAEQFRALGSCLHLRCAVVVGGMDMINQAQ 164

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            L    H+V+ TPGR+   +          +  K +VLDEAD +LD+GF +++  +    
Sbjct: 165 TLMQRPHVVIATPGRVKVLLEQNPDIPAVFARTKFLVLDEADRVLDVGFEEELRVVFQCL 224

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  + TL +     A         +    +  + + V  + +D  ++
Sbjct: 225 PKNRQTLLFSATMTSDLQTLLELSSNKAYFYEAYEGFKTVESLKQQYIFVPKNVKDVYLL 284

Query: 237 NI---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +I   +   G ++AI+F ST  S    + +L E   +V AL    SQ  R  A+   + G
Sbjct: 285 HILSKMEEMGIRSAIIFVSTCRSCHLLSLLLEELDLEVAALHSFKSQSLRLAAVHRFKSG 344

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVA+RG+D+P ++LV++ ++   P + +HR GRT RAGR G+S+ ++ QN  
Sbjct: 345 QVPILLATDVASRGLDIPTVDLVVNYDIPRYPRDYVHRVGRTARAGRGGLSLSIVTQNDV 404

Query: 354 RRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
                +       +        E +    +   A+R+    +  D  +   K      L
Sbjct: 405 DLIHEIEAVLGKQLDKFDCKEKEVLDNITKVYKARRVATMKMMDDGFEEKAKARKAQKL 463


>gi|328789449|ref|XP_003251275.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Apis
           mellifera]
          Length = 452

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/426 (27%), Positives = 207/426 (48%), Gaps = 23/426 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +  +  G    T +Q+  +   L   D +  A+TGSGKT+AF L +   L  +
Sbjct: 7   NLSSWLVQQCTFMGLKYPTPIQQNCIPRILAGTDCIGCAKTGSGKTLAFALPILQKLSED 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA Q+  +   +    G+   + +GG+ +  +  +L    
Sbjct: 67  P------YGIFALVLTPTRELAFQIADQFSAIGKSIGLKKCIIVGGMDMVVQGLELSKHP 120

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           HIVV TPGRL DH+      ++  +K +VLDEAD +L+  F D ++ I ++ PK++++L+
Sbjct: 121 HIVVATPGRLADHLESCNTFSLKQIKFLVLDEADRLLEGYFDDQLKTIFEALPKQKQILL 180

Query: 185 FSATISP--AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT++          + +         S      +++   VL     RD+ +V ++R  
Sbjct: 181 FSATMTDTLHKVKHIVSNKAFIWESKDESGIATVKELNQHYVLCPRDIRDSFLVEVIRTF 240

Query: 243 GAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            A N     I+F  T       +  L +  F+ VAL   + Q++R  AL   +    ++ 
Sbjct: 241 RANNKNGSIIIFTDTCKHCQILSMTLNDVGFKNVALHSMVKQKDRLAALVQFKSNHIKIL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+P +EL+I+  + + P+  +HR GRT RAG+ GM++ +I  +  +    
Sbjct: 301 IATDVAARGLDIPTVELIINHIIPNVPKEYIHRVGRTARAGKSGMAITLITPHDIKLLHA 360

Query: 359 LFREANVSVVWEPAPSVE--------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +       +        E        ++ +R+A+  L +  F +    +++K   ++L  
Sbjct: 361 IENTIGTKLTEYKINDKEIITILTQISVAKREAEMKLDETNFYEKKIINKRK--KLILEG 418

Query: 411 HDPEKI 416
            DP++I
Sbjct: 419 KDPDEI 424


>gi|311276036|ref|XP_003135023.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Sus
           scrofa]
          Length = 630

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 187/382 (48%), Gaps = 6/382 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +++ + G+   T +Q       L+  D++  AQTG+GKT+++ +     L ++   
Sbjct: 233 PELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVS 292

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P  L + PTRELA+QVG E    Y+  G+      GG +   + +D+  G  I+
Sbjct: 293 RGKRNGPGMLVLTPTRELALQVGAECSK-YSYKGLKSVCIYGGGNRKGQIQDIMKGVDII 351

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D      +N+  +  +VLDEAD+MLDLGF   I  IL      R+ +M SAT
Sbjct: 352 IATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSAT 411

Query: 189 ISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN- 246
               I  LA +Y K+ + V + + +      +    ++    ++ +     L+    K+ 
Sbjct: 412 WPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDK 471

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF S +      +  L+     V +L G+  Q +R  AL   + G+ ++ IATD+A+R
Sbjct: 472 VIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASR 531

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFREA 363
           G+D+ D+  V +     N E  +HR GRTGRAG+ G SV ++ Q+  +       + + A
Sbjct: 532 GLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRA 591

Query: 364 NVSVVWEPAPSVEAIRERDAQR 385
           N S+  +     E  +    ++
Sbjct: 592 NQSIPEDLLSMAEQYKLHKQEK 613


>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
 gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
          Length = 397

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 183/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++  H    
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEHQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|157963312|ref|YP_001503346.1| ATP-dependent RNA helicase DbpA [Shewanella pealeana ATCC 700345]
 gi|157848312|gb|ABV88811.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 469

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  + 
Sbjct: 19  LKTELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKR 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      + V    GGV +  +   L++GA
Sbjct: 79  FRI------QCLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGA 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++ ++  +VLDEAD ML++GF+ ++E I+D  P +R+ L+F
Sbjct: 133 HIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTLLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++A       V V +AS +   +   +   +   +DR  A+  +L  +  +
Sbjct: 193 SATFPEQIQSIADKIMFKPVLVKVASTHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPE 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         L    F VVAL G+L Q++R   L    +    + +ATDVAA
Sbjct: 253 SAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ VI+  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 313 RGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYNDEDGYKIALLEDYLER 372

Query: 366 SVVWEPAPS 374
            +V E  PS
Sbjct: 373 DIVNEALPS 381



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G KQK     ++  L   +GI    +G I++     +V V+        + +
Sbjct: 394 MITLQIDGGKKQKLRPGDILGALTGENGIEGSEVGKIKITDMRAYVAVNRKVAKKALQKI 453

Query: 526 KLDK 529
              K
Sbjct: 454 TNGK 457


>gi|260598959|ref|YP_003211530.1| ATP-dependent RNA helicase SrmB [Cronobacter turicensis z3032]
 gi|260218136|emb|CBA32943.1| ATP-dependent RNA helicase srmB [Cronobacter turicensis z3032]
          Length = 444

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 123/389 (31%), Positives = 189/389 (48%), Gaps = 10/389 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     + +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ L+FSAT           +  ++        S   +     +      +  +   +V
Sbjct: 181 RKQTLLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADNIEHKTALLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L +       L GE+ Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANQLRQAGINNCYLEGEMVQVKRNEAIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARGID+PD+  VI+ ++    +  LHR GRT RAGRKG ++ ++  +     
Sbjct: 301 VLIATDVAARGIDIPDVSHVINFDMPRTADTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360

Query: 357 ERLFREANVS----VVWEPAPSVEAIRER 381
            ++ R  N      V+ E  PS  A  E+
Sbjct: 361 GKVGRYLNEPLKARVIDELRPSTRAPSEK 389


>gi|238749573|ref|ZP_04611078.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
 gi|238712228|gb|EEQ04441.1| ATP-independent RNA helicase dbpA [Yersinia rohdei ATCC 43380]
          Length = 504

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ +   +    
Sbjct: 55  LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGVLDKIAVGE 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 115 ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 169 HIVVGTPGRIQEHLRKKTLILDDLKILVLDEADRMLDMGFADAIDDVISYTPPQRQTLLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++    +         +  +   I+          R   ++++L ++  +
Sbjct: 229 SATYPQGIEQISARV-QRQPVNVEVDDGDEAPAIEQVFFETTREKRLPLLISVLSHYQPE 287

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 288 SCVVFCNTKKDCQNVYEALESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAA 347

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL LV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 348 RGLDIKDLALVVNFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQM 407

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R A  +L+  +    I G  K  + 
Sbjct: 408 KLKWTPADQV----SRSANTMLEPDMVTLCIDGGRKAKIR 443



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 426 EPDMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKSCAKRAL 485

Query: 523 RTVKLDK 529
             ++  K
Sbjct: 486 AQLQQGK 492


>gi|195050593|ref|XP_001992926.1| GH13374 [Drosophila grimshawi]
 gi|193899985|gb|EDV98851.1| GH13374 [Drosophila grimshawi]
          Length = 459

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 167/357 (46%), Gaps = 9/357 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KDVL  A+ G+GKT A+ + +   
Sbjct: 60  FEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 119

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL + PTRELA+Q  +    L     + V V  GG  +  +   +
Sbjct: 120 IDPTKDYI------QALVMVPTRELALQTSQICIELAKHLDIRVMVTTGGTILKDDILRI 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  K  ++SH K +VLDEAD++L L F+  ++ ++   PK  +
Sbjct: 174 YQKVQLIIATPGRILDLMDKKVADMSHCKILVLDEADKLLSLDFQGMLDHVILKLPKDPQ 233

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT    +    + + ++   +N+  E             V    + + +  +   
Sbjct: 234 ILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  +++Q  R+      R G  R  + +
Sbjct: 293 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCS 352

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I    +    R
Sbjct: 353 DLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHR 409


>gi|186474785|ref|YP_001856255.1| ATP-dependent RNA helicase DbpA [Burkholderia phymatum STM815]
 gi|184191244|gb|ACC69209.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
           STM815]
          Length = 463

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q +   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 8   FSELPLSQAVLANLTQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +   A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   
Sbjct: 68  LD------ARRYAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L++  L  +VLDEAD MLD+GF DDI  +    PK+R
Sbjct: 122 LEHGAHIVVGTPGRIMDHLERGSLSLDALNTLVLDEADRMLDMGFFDDIAKVARQCPKER 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L 
Sbjct: 182 QTLLFSATYPEGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGQLLN 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 241 HYRPVSTIAFCNTKNQCRDLLDVLCAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   + 
Sbjct: 301 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 V W P   + A  +      L  P+    I G  K+ + 
Sbjct: 361 EAQGRDVEWHPLAELNAASDE----PLLPPMETLQILGGRKEKIR 401



 Score = 50.4 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G N   IG I V    T+V V      D LR
Sbjct: 385 PPMETLQILGGRKEKIRPGDVLGALTGDAGFNGSQIGKINVTEFSTYVAVERGIARDALR 444

Query: 523 R 523
           +
Sbjct: 445 K 445


>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
 gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
          Length = 568

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P+ I  +L  +G    T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 126 ITTFKEMKFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPL 185

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L +  R  F     P  L + P+RELA Q    + +            +   +CIG
Sbjct: 186 LMFCLEQEKRLPFVQNEGPYGLVVCPSRELAKQTFEIVSFFVRALEEAGYPSLRGCLCIG 245

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G SV  +   ++ G H++V TPGRL D +  K +N+   + + LDEAD M+D+GF +D+ 
Sbjct: 246 GTSVREQLEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLCLDEADRMIDMGFEEDVR 305

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     + VN+        D+      V    
Sbjct: 306 TIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPITVNVGRAGAASLDVVQEVEYVKQEA 365

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G   Q+ERS A+   
Sbjct: 366 KIVHLLETLQKTAPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRAVDAF 424

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R     V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 425 RRAEKDVLVATDVASKGLDFENIQHVINYDMPEDIENYVHRIGRTGRSGRMGIATTFINK 484

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 485 ACDESVLLDMKHLLLEAKQKVPP 507


>gi|124505577|ref|XP_001351530.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|23498289|emb|CAD49261.1| eukaryotic initiation factor, putative [Plasmodium falciparum 3D7]
 gi|117956286|gb|ABK58711.1| eIF4A-like protein [Plasmodium falciparum]
          Length = 390

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FENI   + +   +   G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 17  TSFENIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          +    + ++PTRELA Q  +    L     V +  CIGG  +  + +
Sbjct: 77  NCVNRN------LNETQVIILSPTRELAEQTQKVCLALADYIHVTIYCCIGGKKMSDDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG H++ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHVISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +    V++ +  +      I      +     +   + ++
Sbjct: 191 TQIILSSATLPQEVLEITNKFMHKPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VFC+T+  V   TK + E  F V  +   +SQ ER + +   R  + RV 
Sbjct: 251 YESLTITQAVVFCNTQMKVDWLTKKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  +    
Sbjct: 311 ISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 370

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 371 IEQYYSTQIDEMPM 384


>gi|327404226|ref|YP_004345064.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327319734|gb|AEA44226.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 379

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/371 (27%), Positives = 186/371 (50%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL+E  Y   T +QE  +   L  KDVL  A TGSGKT ++ L + + L    
Sbjct: 8   LSPFLLQALTEMTYEKPTPIQELAIPAILTGKDVLGIAPTGSGKTASYVLPVLAQLSKVE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-A 125
              +      +L + PTRELA+QV    +    K    + V      V    +       
Sbjct: 68  K--AKNRHIQSLILVPTRELAIQVEEVFKSFAHKLPEPLKVKAVYGGVSINPQMKAMMGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL +      +++S LK++VLDEAD++L+L F+++++ IL   PKKR+ L+F
Sbjct: 126 SILIATPGRLIELAESNAIHLSTLKSLVLDEADKLLNLDFQEEMKRILSWIPKKRQNLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  ++ + +    + + + I +E      I   A  V+   +   +  ++R    K
Sbjct: 186 SATLNDKVSEITQLILHEPIVLKIENEEDSVELIQQTAYRVSDERKGPLLRYLIRSRNMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F S+     +  + L ++     A+  + SQ  R+  L+  + G  +V +ATD+ +
Sbjct: 246 QVLIFTSSTFKADQVVEKLRKNNIDAQAIHSKKSQDARNKVLRNFKAGHLKVLVATDLIS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ EL  +P++ +HR GRTGRA   G ++  +    +   + + ++   
Sbjct: 306 RGIDIEFLPFVINYELPRSPKDYVHRIGRTGRAESTGEALTFVTPEDEHHFKIIQKKMGK 365

Query: 366 SVVWEPAPSVE 376
            V +E    ++
Sbjct: 366 QVPFEETDGLD 376


>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 493

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 175/372 (47%), Gaps = 8/372 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  I E L  +G+   T +Q       L  +D++  AQTGSGKT++F L     
Sbjct: 89  FEEAGFPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPGLVH 148

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +         P+AL +APTREL +Q+ +  +      G+      GG S   + + L
Sbjct: 149 AKDQQP-LRRGDGPIALVLAPTRELVMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKAL 207

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  IV+ TPGRL D        +S +  +VLDEAD MLD+GF   +  I+  +   R+
Sbjct: 208 HEGVEIVIATPGRLIDLHEQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNGNRQ 267

Query: 182 MLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            LM+SAT    +              V    E + +S I     + +  ++++ ++ +L 
Sbjct: 268 TLMWSATWPREVRGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKEDKLLGVLD 327

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC+ + +      VL    +   AL G+ SQ  R   L   R GR  + IA
Sbjct: 328 KFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIA 387

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQ---RRA 356
           T+VA RG+D+ D++LVI+ +     E+ +HR GRT R   ++G+S      N +   R  
Sbjct: 388 TEVAGRGLDVNDVKLVINFDFPGTCEDYVHRIGRTARGNTKEGISHTFFTINDKGNAREL 447

Query: 357 ERLFREANVSVV 368
            R+ REAN +V 
Sbjct: 448 IRMLREANQTVP 459


>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 728

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 196/372 (52%), Gaps = 9/372 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N+   + +++ ++GY + TS+Q+  +   L  +D++  A+TGSGKT +F       ++
Sbjct: 260 FDNL---LIQSIQKQGYESPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIPHIM 316

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P+AL +APTRELA Q+  E +       +  +V  GGV+   + R+L+ 
Sbjct: 317 -DQPYLEKGDGPIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGGVTKLLQCRELKA 375

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D I+ K   ++ +  +VLDEAD M D+GF   ++ I+      R+ L
Sbjct: 376 GCEILVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRPDRQTL 435

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRY 241
           +FSAT  P I  LA+N   D +R++I +    + DI    ++++ +      +       
Sbjct: 436 LFSATFPPNIEELARNILIDPIRISIGNTGSANQDITQNVIVLSSNGEKWNWLIQRLPSL 495

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               N I+F ST+ +V   +  L +  F    L G+  QQER+  +   +DG   + +AT
Sbjct: 496 VSQGNVIIFVSTKVAVDELSMNLVKFGFPSEGLHGDKDQQERTMIINKFKDGSVPILVAT 555

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+  +  V++ + S + ++  HR GRTGRAG +G++  +I       +  L  
Sbjct: 556 DVAARGLDINLIRNVVNFDPSRDIDSHTHRIGRTGRAGTQGIAYTLITPKDIHFSAELVK 615

Query: 360 -FREANVSVVWE 370
              EAN  V  E
Sbjct: 616 HLEEANQIVPPE 627


>gi|223590230|sp|A5DQS0|DED1_PICGU RecName: Full=ATP-dependent RNA helicase DED1
          Length = 637

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 176 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 235

Query: 67  DRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P AL +APTREL  Q+  E +    ++ V   V  GG  +  +
Sbjct: 236 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 295

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L  G  ++V TPGRL D +    +++S++K +VLDEAD MLD+GF   I  I+    
Sbjct: 296 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 355

Query: 178 KK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 356 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKS 415

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L  +     I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 416 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 475

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  V++ +L  + ++ +HR GRTGRAG  G++     +N +
Sbjct: 476 TAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNR 535

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 536 NVVKGMIELLSEANQEVP 553


>gi|190348962|gb|EDK41523.2| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 205 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 264

Query: 67  DRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P AL +APTREL  Q+  E +    ++ V   V  GG  +  +
Sbjct: 265 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 324

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L  G  ++V TPGRL D +    +++S++K +VLDEAD MLD+GF   I  I+    
Sbjct: 325 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 384

Query: 178 KK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 385 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKS 444

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L  +     I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 445 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 504

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  V++ +L  + ++ +HR GRTGRAG  G++     +N +
Sbjct: 505 TAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNR 564

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 565 NVVKGMIELLSEANQEVP 582


>gi|146413260|ref|XP_001482601.1| hypothetical protein PGUG_05621 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 666

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +I E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 205 LDPLIVENIKLSRFTKPTPVQKYSVPIVASGRDLMACAQTGSGKTGGFLFPVLSESYMNG 264

Query: 67  DRFSPAS---------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P S          P AL +APTREL  Q+  E +    ++ V   V  GG  +  +
Sbjct: 265 PDAVPESQGAFSSHKVHPTALVMAPTRELVSQIFEEAKKFSYRSWVRPCVVYGGADIGTQ 324

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L  G  ++V TPGRL D +    +++S++K +VLDEAD MLD+GF   I  I+    
Sbjct: 325 IRNLDRGCDLLVATPGRLKDLLERGRVSLSNIKYLVLDEADRMLDMGFEPQIRHIVQECD 384

Query: 178 KK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 385 MPGVESRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVLYVEDDEKKS 444

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L  +     I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 445 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 504

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  V++ +L  + ++ +HR GRTGRAG  G++     +N +
Sbjct: 505 TAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRAGNVGIATAFFNRNNR 564

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 565 NVVKGMIELLSEANQEVP 582


>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
          Length = 485

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 194/379 (51%), Gaps = 10/379 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 59  KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 118

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 119 QALMNKPQ------SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAI 172

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 173 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPR 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V 
Sbjct: 233 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVYLVY 292

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  ++AIVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 293 LLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q       
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412

Query: 358 RLFREANVSVVWEPAPSVE 376
           R+       +        E
Sbjct: 413 RIENALGKKLDEYKVEKEE 431


>gi|302653126|ref|XP_003018394.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
 gi|291182037|gb|EFE37749.1| hypothetical protein TRV_07588 [Trichophyton verrucosum HKI 0517]
          Length = 530

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/397 (25%), Positives = 170/397 (42%), Gaps = 30/397 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + +      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKIAK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------------- 220
           +++FSAT    + T    Y               H   D                     
Sbjct: 223 VMLFSATFPIIVKTFKVRYTSIFFITCGNQLILIHIFQDKHMRNPYEINLMDELTLRGIT 282

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                V    + + +  +        +I+FC++   V    K + E  +        + Q
Sbjct: 283 QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQ 342

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             R+      R+G  R  + +D+  RGID+  + +VI+ +   N E  LHR GR+GR G 
Sbjct: 343 HNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH 402

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
            G+++ +I  + +    ++ +E    +   P PS++ 
Sbjct: 403 LGLAINLINWDDRYNLYKIEQELGTEIQPIP-PSIDK 438


>gi|281201459|gb|EFA75669.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 751

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 177/379 (46%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  V+ + +    Y   T VQ++ L   ++ +D++  AQTGSGKT AF   + S +L +
Sbjct: 291 DLGDVLFKNIKYAKYTKPTPVQKSALPIIMKGRDLMACAQTGSGKTAAFLFPIISGILLD 350

Query: 66  N---------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                             P AL +APTRELA+Q+  E       + V   V  GG  +  
Sbjct: 351 GAPEPLAAYRPGVPRPVHPRALVLAPTRELALQIYDEASKFSYGSPVTSVVVYGGAEISH 410

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G  I+V T GRL D +    ++++H+K +VLDEAD MLD+GF   I  I+  +
Sbjct: 411 QIAELDRGCDILVATTGRLVDLLSRGRVSLAHVKYLVLDEADRMLDMGFEPQIRQIVVDN 470

Query: 177 PKKRRMLMFSATISPAITTLAKN---YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                    +   S       +N      +              +I  R   V   ++++
Sbjct: 471 DMPGNRDRQTLMFSATFPKPIQNLASDFLNNYIFLKVGVIGTTQNITQRIEYVQDDEKNS 530

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +++ L    +    ++F  T+      T  L    F    + G+LSQ ER +AL   R 
Sbjct: 531 YLLDFLSTLKSDGLTLIFVETKRLCDSLTHYLNTKGFASTCIHGDLSQYERESALNSFRT 590

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
            +    +ATDVA+RG+ +P++  VI+ +L ++    +HR GRTGRAG+KG ++    +  
Sbjct: 591 NQTPYLVATDVASRGLHIPNVLYVINFDLPTDIHVYVHRIGRTGRAGKKGFAISFYNERN 650

Query: 351 -NMQRRAERLFREANVSVV 368
            ++     +L R++N  V 
Sbjct: 651 KSLSTDLLQLMRKSNQEVP 669


>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
 gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
          Length = 435

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 195/374 (52%), Gaps = 11/374 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+   +  +++   + N T +Q A + P L  +DV+  A+TGSGKT +F + + 
Sbjct: 39  KSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPIL 98

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +     P     A+ +APTRELA Q+   +  L    G      +GGV +  +  
Sbjct: 99  NYLLEK-----PQKQVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAI 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+VV TPGRL DH++     ++  +K +V+DEAD ML + F  +I  IL+  P 
Sbjct: 154 ALARNPHVVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPD 213

Query: 179 K---RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               RR ++FSAT++  +  L +    D VRV ++++ +    +    + +    +D  +
Sbjct: 214 CEKGRRTMLFSATMTSKVEKLQRASLVDPVRVEVSTKFQTPKKLLQNYLFIPAKYKDCYL 273

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++  H  ++ +VF +T  +V R   +L    F  + L G++SQ +R  AL   + G  
Sbjct: 274 TYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALTKFKSGGR 333

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + I TDVA+RG+D+P +++VI+ +L  + ++ +HR GRT RAGR G ++ ++ Q     
Sbjct: 334 DILICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEV 393

Query: 356 AERLFREANVSVVW 369
            +RL       +  
Sbjct: 394 YQRLEHLLGHRLPE 407


>gi|94265120|ref|ZP_01288885.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93454407|gb|EAT04705.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/368 (30%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    +   ++  GY   T +Q   +    R +D++  AQTG+GKT AF L L   L   
Sbjct: 7   DFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     A+ +APTRELA Q+   +  L  +TG+      GGVS   + +  + G 
Sbjct: 64  --SAGPRGRVRAVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFKAGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL DH+  + +N+  ++ +VLDEAD M D+GF   I+ +L   P KR+ L+F
Sbjct: 122 EIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA +  KD  RV I    +  + + ++   V    +   +  +++     
Sbjct: 182 SATMPAEIRHLADSILKDPARVQIN-HTQPTALVAHKLYRVEKQGKGALLKQVMQESAFS 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+ +  +    L +   + VAL G +SQ +R  A++  + GR  + +ATD+AA
Sbjct: 241 SALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++ +  E   HR GRTGRA R G +        +    ++ R    
Sbjct: 301 RGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQIERAIGS 360

Query: 366 SVVWEPAP 373
            ++    P
Sbjct: 361 QMITLETP 368


>gi|71896321|ref|NP_001026097.1| ATP-dependent RNA helicase DDX42 [Gallus gallus]
 gi|82194905|sp|Q5F485|DDX42_CHICK RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|60098437|emb|CAH65049.1| hypothetical protein RCJMB04_2e15 [Gallus gallus]
          Length = 944

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   +  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     +          +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     + +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 559

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 122/371 (32%), Positives = 185/371 (49%), Gaps = 9/371 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  ALSE G      +Q   L   LR +DV+  A+TG+GKT+ FG+ L  
Sbjct: 24  TFADLGVHPDIVRALSESGIERTFDIQALTLPLALRGEDVIGQARTGTGKTLGFGVPLLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+   D       P AL + PTREL +QV ++L       GV +    GG     + + 
Sbjct: 84  RLVTPGDG-----TPQALVVVPTRELCLQVSQDLAEAGKYLGVRITSIYGGRPYESQIQS 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +V+GTPGRL D    + L +  +  +VLDEADEMLDLGF  DIE IL   P+ R
Sbjct: 139 LRSGVDVVIGTPGRLLDLAEQRNLVLGKISTLVLDEADEMLDLGFLPDIERILRMVPEDR 198

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I T       Q   +R         H             D+   I  +
Sbjct: 199 QTMLFSATMPGPILTLARTFLRQPTHIRAEAGETGAIHERTTQFVYRAHSLDKPELIAKV 258

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  + 
Sbjct: 259 LQAEGRGLTMIFTRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDIL 318

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ ++  + +  +HR GRTGRAGR G+++ ++  +   R + 
Sbjct: 319 VATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEVPRWKL 378

Query: 359 LFREANVSVVW 369
           +  E  + +  
Sbjct: 379 ISDELGLDMPE 389


>gi|152972774|ref|YP_001337920.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262040904|ref|ZP_06014130.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012120|ref|ZP_08307282.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
 gi|189040033|sp|A6TGG9|RHLB_KLEP7 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150957623|gb|ABR79653.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259041793|gb|EEW42838.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533935|gb|EGF60594.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|302811016|ref|XP_002987198.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
 gi|300145095|gb|EFJ11774.1| hypothetical protein SELMODRAFT_158505 [Selaginella moellendorffii]
          Length = 493

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 127/478 (26%), Positives = 219/478 (45%), Gaps = 28/478 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A++E G+ N+T +Q   +   L+ +DVL +A+TGSGKT+AF +     L    
Sbjct: 12  LSEPTKNAIAEIGFTNMTEIQSRSIPELLKGRDVLGAARTGSGKTLAFLVPAVELLYH-- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    L I+PTRELA+Q+      L         + +GGV  + E   L+ G +
Sbjct: 70  ARFMPRNGTGVLIISPTRELAMQIYGVARKLMKHHSQTHGIVMGGVKRNVEAEALKKGVN 129

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH++        +L+ +V+DEAD +L++GF +D++ I+   PK+R+ ++F
Sbjct: 130 LLVSTPGRLLDHLQNTKGFLFKNLQCLVIDEADRILEIGFEEDMKQIIKLLPKERQTVLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LAK   K A       + R  + +   +    +V    R   +   L+ +
Sbjct: 190 SATQTTKVEDLAKLSFKKAPIYIGVDDERSKATVEGLEQGYCVVKTDKRFLLLFTFLKKN 249

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L       + + G+  QQ+R+N      +    + + TD
Sbjct: 250 LKKKVMVFFSSCNSVKFHGELLNFIDIPCLDIHGKQKQQKRTNTYFEFCNAEKGILLCTD 309

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P ++ +I  +   +P+  +HR GRT R   GR G ++  +        +R  
Sbjct: 310 VAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGESGR-GRALLFLTPEELG-FKRYL 367

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-------- 411
             A V +     P  + A  +   + ++     L     D  +   +    H        
Sbjct: 368 TMAKVPLNEYMFPENKIANVQSQLENLIGKNYNLHRSARDAYRSYIMAYNSHAMKDAFNV 427

Query: 412 ---DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
              D + +AA F      G   P +I  +S+ S   +FR   +  K  G         
Sbjct: 428 HRLDLQAVAASF------GFSCPPKINNLSIDSSAAKFRKQGKERKSSGHKFGASNPY 479


>gi|194747363|ref|XP_001956121.1| GF24750 [Drosophila ananassae]
 gi|190623403|gb|EDV38927.1| GF24750 [Drosophila ananassae]
          Length = 613

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 178/381 (46%), Gaps = 12/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P      +  + Y   T +Q       +   +++  A+TGSGKT+AF L  
Sbjct: 115 VQSFDEVCFPDYCMNEIRRQRYTEPTPIQAQAWPIAMSGHNMVGIAKTGSGKTLAFILPA 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+        +   V      GG    R+ 
Sbjct: 175 ILHINGQQP-LQRGDGPIALVLAPTRELAQQIQSVANDFGSSAYVRNTCIFGGAPRSRQA 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  IV+ TPGRL D ++G   N+     +VLDEAD MLD+GF   I  IL     
Sbjct: 234 NDLERGVQIVIATPGRLLDFLQGGATNLKRCTYLVLDEADRMLDMGFEQQIRKILGQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RD 232
            R++LM+SAT    +  LA+++  + +++NI S     +    + V V          +D
Sbjct: 294 DRQILMWSATWPKEVRKLAEDFLGNYIQINIGSLELSANHNIRQFVEVCAEHEKGGKLKD 353

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                  +       I+F +T+  V    + +      V ++ G+ SQ +R + L   R+
Sbjct: 354 LLSHIYDQSTSPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDSVLNDFRN 413

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR  + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S     +  
Sbjct: 414 GRHNILVATDVAARGLDVDGIKYVINFDFPQSSEDYVHRIGRTGRKHSTGTSYAFFTRKN 473

Query: 353 ---QRRAERLFREANVSVVWE 370
               R    + REAN +V  E
Sbjct: 474 AKCARALIEILREANQNVNPE 494


>gi|293376696|ref|ZP_06622919.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325845185|ref|ZP_08168493.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
 gi|292644653|gb|EFF62740.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
 gi|325488781|gb|EGC91182.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
          Length = 368

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 107/363 (29%), Positives = 184/363 (50%), Gaps = 6/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L + G  + T +QE         KDV+  AQTG+GKT+AF L L   +  + 
Sbjct: 8   VSDDLIQVLKKSGITSPTPIQEQCYPLIKNYKDVIAQAQTGTGKTLAFLLPLFENISPDI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +      A  AL I PTRELA+Q+  E   L     + V    GG ++  +   L+   H
Sbjct: 68  E------ATQALIITPTRELALQITEEANKLAEIRNINVLAAYGGRNIGSQLNKLKKSIH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  + + +  +K+VV+DEAD+ML +GFR++++ IL  +P+ R+ L FS
Sbjct: 122 LIIATPGRLIDHLERQTITLDKVKSVVIDEADQMLLMGFRNEVDQILRQTPRNRQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++P +  LA  Y  D   + I ++      I    V      + +A+  +L       
Sbjct: 182 ATMAPNVKRLAYRYSYDPTMITIEAKKVAVESIKQELVETTDRWKADALCQVLEEDNPFL 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+    +    + +  F    +  +++Q +R   L+  R+   +  IATDVA+R
Sbjct: 242 AIIFCRTKRRADQLFAKMKQRGFNTQVIHSDIAQNKRERILKSFREADLQYLIATDVASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++   PE  +HR GRTGRAG +G +   +          + R+   +
Sbjct: 302 GLDISGVTHIYNYDIPETPETYIHRIGRTGRAGEEGYTCLFVAPKDDFELNAIERKLRFN 361

Query: 367 VVW 369
           +  
Sbjct: 362 IPR 364


>gi|145301126|ref|YP_001143967.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189040025|sp|A4STJ7|RHLB_AERS4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|142853898|gb|ABO92219.1| ATP-dependent RNA helicase RhlB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 429

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/386 (29%), Positives = 192/386 (49%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELAVQ+  + + + A TG+ + +  GG    ++   L+ G 
Sbjct: 76  LSNPRLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+    P       +
Sbjct: 136 DILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V I  E      I       +  D+   +++++    
Sbjct: 196 LFSATLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELFYPSNEDKMLLLLSLMEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGTLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+ +  ++       +    
Sbjct: 316 AARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           +      P P    + + D + +L D
Sbjct: 376 H-----HPIP----VSKYDREALLDD 392


>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
 gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
          Length = 465

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/408 (32%), Positives = 210/408 (51%), Gaps = 14/408 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F ++P      +AL+  GY N+T VQ   L P L+ +DV++ A+TGSGKT AF + L 
Sbjct: 4   TLFSSLPLNPAQLDALTGLGYANMTQVQAQSLPPILKRQDVIIQAKTGSGKTAAFAIGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N RF       A+ + PTRELA QVG     L ++   V  V + G      +R
Sbjct: 64  HHL---NPRF---FGVQAVVMCPTRELAEQVGEATRQLASRMSNVKVVMLCGGKPFGAQR 117

Query: 120 DL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           D   +GAHIVVGTPGR+ DH++   L +  +   VLDEAD MLD+GF D +  I    P 
Sbjct: 118 DSLHHGAHIVVGTPGRIQDHLQRGTLELKGVTTFVLDEADRMLDMGFADVMAEITAKLPA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+ SAT    I  ++++ QK+ +++ +          ++     V   +R+ A++ 
Sbjct: 178 DRQTLLLSATFPDDIKKISRSIQKNPIQITVDAEVVHDEVVLEQVFFEVQKHERNVALLA 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  ++   NA+VFC+T+   +   + L EH  +  A+ G+L Q+ER   L    +    V
Sbjct: 238 LFEHYRPANAMVFCNTKKQCAEVARFLREHDIEAAAIHGDLEQRERDQVLLQFANNSCPV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+P LE+V++ EL  + +  +HR GRTGRAG  G +  ++      R  
Sbjct: 298 LVASDVAARGLDIPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIVTPPEAPRMR 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            +        V +   S++    RD    LQ  +    +    K+ + 
Sbjct: 358 VIEDYLKTHCVCDVLASLD----RDPNYQLQGAMVTLQLDAGRKQKIR 401



 Score = 64.2 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               +           L  G KQK     ++  L   +G++   IG I++  + ++V + 
Sbjct: 376 DRDPNYQLQGAMVTLQLDAGRKQKIRPGDILGALTGDAGLSGGQIGKIKILDNGSYVAIE 435

Query: 515 ADGV----DLLRRTVKLDKGIQLKYLGGEK 540
              +    + L       + I+++ +  ++
Sbjct: 436 RSALRQAMNYLAEGKVKGRAIKVRRMKAQR 465


>gi|328866692|gb|EGG15075.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 845

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 177/380 (46%), Gaps = 14/380 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  V+   +    Y   T VQ++ L   ++E+D++  AQTGSGKT AF   + S++L +
Sbjct: 379 DLGDVLFRNIQYAKYTRPTPVQKSALPIIMKERDLMACAQTGSGKTAAFLFPIISSILLD 438

Query: 66  NDRFSPA---------SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                PA           P AL +APTRELA Q+  E       + V   V  GG  + +
Sbjct: 439 GAPEPPAAYRPGVPRPVHPRALVLAPTRELAQQIYEESVKFSYGSPVASVVVYGGAEISQ 498

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G  I+V T GRL D +    +++S +K +VLDEAD MLD+GF   I  I+   
Sbjct: 499 QIAELDRGCDILVATTGRLVDLLSRGRVSLSQVKFLVLDEADRMLDMGFEPQIRQIIQDH 558

Query: 177 PKKRRMLMFSATISPAITTLAKN---YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                    +   S       +N      D              +I  R   V   ++++
Sbjct: 559 DLPCNKDRQTLMFSATFPKPIQNLASDFLDNYIFLKVGVIGTTQNITQRIEYVPDDEKNS 618

Query: 234 AIVNILRYHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            +++ L       A+  +F  T+      T  L    +    + G+LSQ ER +AL   R
Sbjct: 619 TLLDFLETLTKSQALTLIFVETKRLCDSLTVFLNSRGYPTTCIHGDLSQYERESALNSFR 678

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G     +ATDVA+RG+ +P++  VI+ +L ++    +HR GRTGRAG+KG ++    + 
Sbjct: 679 SGNTPFLVATDVASRGLHIPNVMHVINYDLPNDVHVYVHRIGRTGRAGKKGNAISFFNEK 738

Query: 352 MQRRAERLFREANVSVVWEP 371
            +  A+ LF+    S    P
Sbjct: 739 NKPIAQELFQLMKKSNQEVP 758


>gi|260912843|ref|ZP_05919329.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
 gi|260633221|gb|EEX51386.1| ATP-dependent RNA helicase RhlB [Pasteurella dagmatis ATCC 43325]
          Length = 449

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 193/391 (49%), Gaps = 14/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +  AL  +G+   T +Q   L   L  KD+   AQTG+GKT+AF  A    
Sbjct: 36  FSDLPLNSKVLSALERKGFEYCTPIQALSLPISLAGKDIAGQAQTGTGKTMAFLTATFHH 95

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL         S P AL +APTRELAVQ+  + E L   T +   +  GG    ++ + +
Sbjct: 96  LLTHQSE-KNTSQPRALILAPTRELAVQINNDAELLSKATNLKTGLAYGGDGYEKQLKTI 154

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 155 EKGVDILIGTTGRVIDYVKQGIICLDQIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPEA 214

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   V I    +    I       +  D+   ++ +L
Sbjct: 215 RLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIKEELFYPSNQDKMALLLTLL 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         L+    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 275 EEEWPERCIVFANTKHRCEEIWGYLSADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 335 ATDVAARGLHISDVTHVFNYDLPDDCEDYVHRIGRTGRAGESGVSISFACEEYAMNLPAI 394

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + DA+ +L+ P
Sbjct: 395 ENYIAHSIP---------VSQYDAKALLELP 416


>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
 gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
 gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
          Length = 506

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 194/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 37  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 96

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 97  KAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 156

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 157 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 216

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 217 IEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 276

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 277 VDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 336

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 337 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 396

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 397 VSLVHHAEQGALKRIER-----FVRSPLP 420


>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
 gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
          Length = 506

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 194/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 37  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 96

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 97  KAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 156

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 157 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 216

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 217 IEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 276

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 277 VDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 336

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 337 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 396

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 397 VSLVHHAEQGALKRIER-----FVRSPLP 420


>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           multivorans ATCC 17616]
 gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 505

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 131/389 (33%), Positives = 194/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 37  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 96

Query: 64  -----------------AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 97  KAQAQQPRAPREANQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 156

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 157 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 216

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I++++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 217 IEDIETIVEATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 276

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  FQ  AL G+L Q  R+
Sbjct: 277 VDDRDHKDRLLDHLLRDAALDQAIIFTATKIDADQLAGRLADAGFQSAALHGDLPQGARN 336

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 337 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 396

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 397 VSLVHHAEQGALKRIER-----FVRSPLP 420


>gi|306819140|ref|ZP_07452854.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
 gi|304648116|gb|EFM45427.1| ATP-dependent RNA helicase DeaD [Mobiluncus mulieris ATCC 35239]
          Length = 523

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 217/490 (44%), Gaps = 34/490 (6%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K F +    P+++  AL+++G ++   +Q   L   +   D++  A+TG+GKT+ F + +
Sbjct: 32  KTFSDFGVEPEIVA-ALADKGIIHPFPIQALTLPVAIERHDIIGQAKTGTGKTLGFAIPI 90

Query: 59  ASTLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              ++   D          AP AL + PTRELA QV  E+    +     +    GGV  
Sbjct: 91  LHDIIGPGDEGWDELPSPGAPQALVLLPTRELAKQVAAEIRAAASHRVARILEIYGGVGF 150

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + + L++G  +VVGTPGRL D ++   L +  ++ +VLDEADEMLD+GF  D+E ++ 
Sbjct: 151 DSQIQSLKDGVEVVVGTPGRLIDLMKHGELQLKEVRTLVLDEADEMLDMGFLPDVEVLIA 210

Query: 175 SSPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           ++P +R  ++FSAT+   +                 + + +++    +   A  V   ++
Sbjct: 211 ATPPERHTMLFSATMPGPVVALARRYMYQPTHIRAADPSDDSKTVRQVHQFAYRVHSMNK 270

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +  +  IL+       I+F  T+ S  R    L    F   A+ G+L+Q  R  AL+  R
Sbjct: 271 EEVVARILQAKNRGLTIIFTRTKRSCQRLADELTNRGFAAGAIHGDLNQSARERALRAFR 330

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG  G +V  +   
Sbjct: 331 HGKVDVLVATDVAARGIDVDDVTHVINFECPEDEKTYIHRIGRTARAGHSGTAVTFVDWE 390

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R                      +  R  +  L++P   ++         D+ +   
Sbjct: 391 SVTRWR--------------------VINRALELGLENP--TETYHTSAHLYADLNIPID 428

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            P  +     +       A E++   SL + R+  R  +R          +    S    
Sbjct: 429 TPGYLPRSLRKRAGLNAEALEDLGGDSLGASRNGHRHKNRDHHKNRKRPTDKNAKSPHRA 488

Query: 472 -SVGSKQKAE 480
              G K  A+
Sbjct: 489 KDSGKKDGAK 498


>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 566

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 196/377 (51%), Gaps = 9/377 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+   I E+L++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  KSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +   +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +  
Sbjct: 97  QRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRKRNARIATIYGGRAYE 156

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   LQ G  IVVGTPGRL D  + K L++ ++K V+LDEADEMLDLGF  D+E ++  
Sbjct: 157 PQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEMLDLGFLPDVETLIAG 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRD 232
           +P  R+ L+FSAT+   +  +A+ Y      +  A  N       DI          D+ 
Sbjct: 217 TPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPNDEGLTKRDIRQLIYRAHSMDKT 276

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+
Sbjct: 277 EVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +  + 
Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396

Query: 353 QRRAERLFREANVSVVW 369
             R   + +   +SV  
Sbjct: 397 MPRWGLINKALGLSVPE 413


>gi|67475258|ref|XP_653330.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56470272|gb|EAL47944.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 578

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 195/386 (50%), Gaps = 18/386 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   + +   + + G+ +   VQ+A +   L ++D++  AQTGSGKT AF   +
Sbjct: 130 IETFYDIDLGEELDHNIFKAGFYHPMPVQKATIPIVLDKRDLMSCAQTGSGKTAAFLFPI 189

Query: 59  ASTLLAENDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            S +L        ++        P+AL +APTREL  Q+  E       T +      GG
Sbjct: 190 ISDILKNPPMPRQSNFSHRVTVFPVALILAPTRELGQQIYEEAVRFTEDTPIRSVCVYGG 249

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
              + + +++  G  I+V TPGRL      K +++S ++ ++ DEAD MLD+GF   I  
Sbjct: 250 SDSYTQIQEMGKGCDILVATPGRLLYFTEKKIVSLSSVRYLIFDEADRMLDMGFEPQIRE 309

Query: 172 ILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I + +        + LMFSAT    I  LA ++  D V + +         I    + V 
Sbjct: 310 ICEDNEMPPVGKRQTLMFSATFPKQIQRLAADFLDDYVFITVGRAGSTVESIQQIILWVE 369

Query: 228 LSDRDNAIVNILRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              +  AI+++L     K    ++F  T+         L +H ++V ++ G+ SQ +R  
Sbjct: 370 EEIKQEAILDVLGEFAGKGQKTVIFVETKRGADILENYLYDHGYKVDSIHGDRSQADRDF 429

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L+  ++   ++ +ATDVA+RG+D+PD+E+VI+ ++ +  E+ +HR GRTGRAG+KG ++
Sbjct: 430 SLKRFKENVIQLLVATDVASRGLDIPDIEVVINYDMPNEIESYVHRVGRTGRAGKKGTAI 489

Query: 346 FVIPQNMQRRA---ERLFREANVSVV 368
             I +  Q        L  EA  ++ 
Sbjct: 490 TFINEKTQNLIPPLVSLLEEAKQTIP 515


>gi|323455619|gb|EGB11487.1| hypothetical protein AURANDRAFT_52587 [Aureococcus anophagefferens]
          Length = 418

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 10/375 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + VQE  +   L+ ++VL  A+ G+GKT AF +     
Sbjct: 46  FEDYFLKRELLMGIFEKGFERPSPVQERAIPIILQNRNVLARAKNGTGKTAAFIIPCLEK 105

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                           L + PTRELA+Q    +  L     V   V  GG S+  +   L
Sbjct: 106 TDPSKKFI------QVLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRL 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H++VGTPGR+ D        +     V++DEAD++L   F   +E ++     +R+
Sbjct: 160 YKPVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQ 219

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           + +FSAT    +    + +  +   +N+  +             V    + + +  +   
Sbjct: 220 ICLFSATFPVTVKNFKEKFIHNPYEINLMDDLTLKGI-TQFYAFVEERQKVHCLHTLFTK 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +++FC++   V    K + E  +    +  ++ Q  R+      R+G  R  +++
Sbjct: 279 LEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVSS 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR GR G  G++V +I  + +    R+  
Sbjct: 339 DLFTRGIDIQSVNVVINFDFPKTSETYLHRIGRAGRFGHLGLAVNLITFDDRFNLYRIES 398

Query: 362 EANVSVVWEPAPSVE 376
           E    +   P P++E
Sbjct: 399 ELATEIKPIP-PTIE 412


>gi|302831193|ref|XP_002947162.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
 gi|300267569|gb|EFJ51752.1| hypothetical protein VOLCADRAFT_103394 [Volvox carteri f.
           nagariensis]
          Length = 481

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 209/394 (53%), Gaps = 15/394 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P  +  A   R +V+ + +Q       L  +D++  A TGSGKT+ FGL +   
Sbjct: 67  FEHTGLPSDMLHA--TRNFVSPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRH 124

Query: 62  LLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           + A+ D        P A+ +APTRELA+Q+ + LE   ++  V      GGV    +   
Sbjct: 125 IAAQRDNGVVSGKGPFAIVMAPTRELALQINQVLEEAGSQCSVRTVCVYGGVPKGPQVAA 184

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VVGTPGR+ D +    L +  +   VLDEAD MLDLGF   I  I+  +   R
Sbjct: 185 LKSGVEVVVGTPGRMEDLLNDGVLQLKKVTYAVLDEADRMLDLGFEPHIRAIMGLTRADR 244

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNIL 239
           + LMFSAT   A+  LA  +    V+V I S++      I  R  ++  + RD  ++ +L
Sbjct: 245 QTLMFSATWPAAVQKLAIAFLSHPVKVTIGSQDLAASHSITQRVDVIDPNARDGRLLELL 304

Query: 240 RYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +          I+F   +    R  ++L+   ++ VA+ G++SQQ+R++A+   + G 
Sbjct: 305 QQYHGAKGRKNRVIIFVLYKKEAPRVEQLLSRKGWKAVAIHGDISQQQRTDAVDKFKSGV 364

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
             + IATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+ G++  F      +
Sbjct: 365 VPLLIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGIAHTFFCAGPDK 424

Query: 354 RRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
            RA  L    REA   V  E      A+++++++
Sbjct: 425 PRAGELINVLREAGQEVPAELLKFGTAVKKKESK 458


>gi|296201782|ref|XP_002748184.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Callithrix jacchus]
          Length = 934

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|68249479|ref|YP_248591.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
 gi|68057678|gb|AAX87931.1| ATP-dependent RNA helicase RhlB [Haemophilus influenzae 86-028NP]
          Length = 418

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 197/391 (50%), Gaps = 13/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P   ++  AL+++G+   T +Q   L   L  +DV   AQTG+GKT+AF  A    
Sbjct: 14  FSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   D       P  L +APTRELAVQ+  + E+L   +G+  A+  GG    ++ + +
Sbjct: 74  LLTHQDPNLEYPHPRTLILAPTRELAVQISNDAEFLAKASGLKTALAYGGDGYDKQLQVI 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           + G  I++GT GR+ D+++   + +  ++ VVLDEAD M DLGF  DI +      +P+ 
Sbjct: 134 ERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQA 193

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I  E +    I       +  D+   ++ ++
Sbjct: 194 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPEQKTGHRIKEELFYPSNQDKMALLLTLM 253

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +T+         LA    +V  L+G+++Q++R + L+   DG   + +
Sbjct: 254 EDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDLDILV 313

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ + D+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +
Sbjct: 314 ATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACEEYAMNLPGI 373

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
                 S+          + + + + +L+ P
Sbjct: 374 EEYIGHSIP---------VSQYETEALLELP 395


>gi|238061200|ref|ZP_04605909.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
 gi|237883011|gb|EEP71839.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
           protein [Micromonospora sp. ATCC 39149]
          Length = 557

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 194/374 (51%), Gaps = 8/374 (2%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F  +   P+ + EAL+E G     ++QE  +   LR  D++  A TG+GKT+ FG+ L 
Sbjct: 52  TFAELGARPETV-EALAEAGITRAFAIQEYAIPIALRGVDMIGQAPTGTGKTLGFGVPLL 110

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A  +       P AL + PTREL +QV ++L       GV V    GGV+   +  
Sbjct: 111 ERVFAPAEGGDGV--PQALVVVPTRELGIQVAKDLAAAGRTRGVRVLPIYGGVAYEPQID 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ 
Sbjct: 169 ALRKGVEILVGTPGRLMDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPED 228

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ ++FSAT+   I TL++ + +  + ++    +E       +         ++   +  
Sbjct: 229 RQTMLFSATMPDPIVTLSRRFLRRPMTIHAGHTAETGPSPQTEQLVYRTHSMNKIEIVAR 288

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+  +
Sbjct: 289 ILQAEGRGLTMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDI 348

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +   + +   HR GRTGRAG  G++V  +  +   R  
Sbjct: 349 LVATDVAARGLDVSGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWR 408

Query: 358 RLFREANVSVVWEP 371
            + +   + +   P
Sbjct: 409 IIDKTLGLEMPEPP 422


>gi|303287833|ref|XP_003063205.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
 gi|226455037|gb|EEH52341.1| dead-box ATP-dependent RNA helicase [Micromonas pusilla CCMP1545]
          Length = 479

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 167/382 (43%), Gaps = 23/382 (6%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           PQ + +A++  GY + T +Q       L+  D++  A+TGSGKTV +       + A  +
Sbjct: 26  PQQLLDAVTRAGYTSPTPIQAQSWPIALQGYDLISVAKTGSGKTVGYLFPGIMHIRARAN 85

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
              P   P    +APTRELA Q+  E        G+      GG     + R+L++G  I
Sbjct: 86  GPRPV-GPTVAVLAPTRELATQIQEETAKFGRAIGMFSVCLYGGAPKGMQLRELRSGPQI 144

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
            + TPGRL D +    +N+     VVLDEAD MLD+GF   I  IL  +P  R+    S 
Sbjct: 145 AIATPGRLNDFLESGAVNLGSATYVVLDEADRMLDMGFEPQIRKILARAPPARQARSISH 204

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------YRAVLVALSDRDN 233
                 T         AV     +       ++                  +     +  
Sbjct: 205 WSPCDPTLFFTATWPKAVVRVATAILTNPIQVNIGDTDSLVANKDISQVIEVCGGFQKQQ 264

Query: 234 --AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V          AIVFCST+    +  + +         + G+  Q+ER   +   +
Sbjct: 265 RLMEVLRNPPAQPLKAIVFCSTKRMCDQIGRSMGGMG---AVIHGDKEQRERDYIINQFK 321

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            GR  V +ATDVAARG+D+ ++ LV++ +  +  E+ +HR GRTGRAG KG +   I   
Sbjct: 322 SGRVPVLVATDVAARGLDIKEVNLVVNFDFPNQIEDYVHRIGRTGRAGNKGHAHSFIEPG 381

Query: 351 --NMQRRAERLFREANVSVVWE 370
             NM R+   + R+A  +V  E
Sbjct: 382 EGNMARKLIPILRDAGQTVSPE 403


>gi|294885688|ref|XP_002771413.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239874994|gb|EER03229.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 431

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 23/374 (6%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   
Sbjct: 70  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEK 129

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + PTRELA+Q     + L       V V  GG S+  +   L
Sbjct: 130 VNTDIT-----DGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRL 184

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HI+VGTPGR+ D       +        V+DEAD++L   F+  +E ++   PK+ 
Sbjct: 185 YNTVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKE- 243

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                          +        V +                  V    + + +  +  
Sbjct: 244 ------------KRQILMFSATFPVTILDFKNKTHSKGCYPVLCFVEERQKVHCLNTLFS 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F    +   + Q  R+      R+G  R  ++
Sbjct: 292 KLTINQAIIFCNSVNRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+  RGID+ ++ +VI+ +   N E  LHR GR+GR G  G+++ ++  + +    R+ 
Sbjct: 352 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRFGHLGIAINMLTYDDRFNLYRIE 411

Query: 361 REANVSVVWEPAPS 374
            E    +  +P PS
Sbjct: 412 HELGTEI--KPIPS 423


>gi|254172736|ref|ZP_04879410.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
 gi|214032892|gb|EEB73720.1| cold-shock deAd box protein a [Thermococcus sp. AM4]
          Length = 392

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 199/368 (54%), Gaps = 11/368 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            FE +   +   EA+  +G+   T +Q  ++   L    D++  +QTG+GKT AF L + 
Sbjct: 2   SFEELGLSESSLEAVKRKGFETPTDIQREVIPRLLEGDVDIIGQSQTGTGKTAAFALPII 61

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +           A+ + PTRELA+QV  E++ L  K  V V    GG  +  + R
Sbjct: 62  EAIDPKEKTV------QAIILTPTRELALQVADEIKSLRGKKRVYVYAIYGGQPIGPQIR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S ++  VLDEAD MLD+GF DDIE I+  +P++
Sbjct: 116 ALERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPEE 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+LMFSAT+   I  LAK Y ++   V ++ +      +D   V V  + +   +  +L
Sbjct: 176 KRILMFSATMPMGILLLAKKYMRNPEVVLVSRDEIVPEMVDQEYVEVLPARKYEKLKEVL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC T+      ++ L    F+  AL+G++SQ  R       ++G+  V +
Sbjct: 236 EE--GFYGIIFCHTKRETRELSERLRRDGFRADALNGDMSQAARERTFNRFKEGKINVLV 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  VI+  L  NPE  +HR GRTGR G++G ++  +      R   +
Sbjct: 294 ATDVAARGLDVREISHVINYSLPMNPEQYIHRIGRTGRMGKRGKAITFLEPGEIGRFRGI 353

Query: 360 FREANVSV 367
            R+A V V
Sbjct: 354 ARKARVEV 361


>gi|24584399|ref|NP_723899.1| vasa [Drosophila melanogaster]
 gi|12644110|sp|P09052|VASA1_DROME RecName: Full=ATP-dependent RNA helicase vasa, isoform A; AltName:
           Full=Antigen Mab46F11
 gi|7298204|gb|AAF53438.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 178/369 (48%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 251 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 311 PHELELGR-PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-- 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+     +      
Sbjct: 370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K+ V V I       SD+      V    + +  +  +    
Sbjct: 430 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK-LIEILSEQ 488

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 489 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERL 359
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTGR G  G +         R       ++
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKI 608

Query: 360 FREANVSVV 368
              +  +V 
Sbjct: 609 LEGSGQTVP 617


>gi|84393643|ref|ZP_00992394.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84375711|gb|EAP92607.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 198/386 (51%), Gaps = 13/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQVI E L ++G+   T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 17  LPQVI-EGLEKKGFDYCTPIQALALPVLLTGQDIAGQAQTGTGKTLAFLTATFNHLLKTP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P A+ +APTRELA+Q+  + + L   TG+  A+  GG S  ++   ++ GA
Sbjct: 76  EHEGRKPNQPRAIIMAPTRELAIQIYNDADSLVESTGIKAALAYGGESYDKQLGKIEEGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + K  N++H++AVVLDEAD M DLGF  DI F+    P+ +    +
Sbjct: 136 DILIGTTGRIIDFYKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPKDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V +  E +    I       +   +   +  ++    
Sbjct: 196 LFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEHKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKREKILEQFTKGDVDLLVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    ++            
Sbjct: 316 AARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFACEDY---------AI 366

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N+  + E       + + DA  +L+D
Sbjct: 367 NLPPIEEYIEHAIPMSDYDASALLED 392


>gi|327348721|gb|EGE77578.1| ATP-dependent RNA helicase HAS1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 639

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/475 (25%), Positives = 214/475 (45%), Gaps = 16/475 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 166 DLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 223

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + I+PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 224 ALRFKPRNGTGVIVISPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLVKGV 283

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH     G    +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 284 NLLIATPGRLLDHLRDTPGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTM 343

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 344 LFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 403

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +      I 
Sbjct: 404 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGTLIC 463

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 464 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 523

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P+ + +  +   ++++    +L+    D  +      A H    +  
Sbjct: 524 -KEARVPVVEFDFPAKKIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFD 582

Query: 417 --AAGFLRIHRA-GLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                 +++ ++ G   P  +   ++    RD+ +   R +         FK   
Sbjct: 583 VHKLDLVKVAKSFGFPTPPRVDITLAASMSRDKKQQGRRNYGSQPKHAPKFKRKV 637


>gi|331217930|ref|XP_003321643.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300633|gb|EFP77224.1| ATP-dependent RNA helicase HAS1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 646

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 211/471 (44%), Gaps = 13/471 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++     +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF +     L   
Sbjct: 114 DLSPPTAKAIQDMGFTKMTEVQARTIPPLMTGRDVLGAARTGSGKTLAFLIPAVEML--S 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    + ++PTRELA+Q+    + L        A+ IGG +   E   L  G 
Sbjct: 172 RLQFKPRNGTGTIIVSPTRELALQIFGVAQELMKHHSQTFAIVIGGANRKAEAEKLVKGV 231

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++       S+LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 232 NLLISTPGRLLDHLQNTKGFVFSNLKALVVDEADRILEIGFEDEMRQIISLLPSENRQSM 291

Query: 185 ----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                  T    +  ++       + V+   +      ++   V+     R   +   L+
Sbjct: 292 LFSATQTTKVQDLARISLRPGPLYINVDADKQEATVQGLEQGYVVCDSDKRFLLLFTFLK 351

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      +    + + 
Sbjct: 352 KSLKKKVIVFFSSCNSVKYHAELLNYIDIPVLDLHGKQKQQKRTNTFFEFCNATTGILLC 411

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S+  +  +      R  
Sbjct: 412 TDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGRSLLFLLPSELGFL-RFL 470

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--- 416
           + A V +     P  + A  +    +++    +L     D  +      A +  +KI   
Sbjct: 471 KMAKVPLNEYSFPMDKLANVQGQLTKLISKNYYLHQSARDGFRSYIQSYASYSLKKIFDV 530

Query: 417 -AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                 ++ +A   +      + + S ++      +  +  G      +G 
Sbjct: 531 NKLDLNKVGQAFGFSVPPAVNIPMGSLKNTENKKHKRDETDGMQTTGVEGG 581


>gi|284006573|emb|CBA71834.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
          Length = 423

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 190/386 (49%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL++ G+ N T +Q + L   +  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 11  LHPKVIEALNKNGFHNCTPIQASTLPFTVEGRDVAGQAQTGTGKTLAFLTSTFHYLLTHP 70

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + + L A TG+ + +  GG     +   LQ+G 
Sbjct: 71  TNSERQVNQPRALIMAPTRELAVQIYTDAKELAAITGLKMGLAYGGDGYDEQLHVLQSGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   + L  
Sbjct: 131 DILIGTTGRLIDYAKQGHIHLGRIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNL 190

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA         + +  + +    I       +  ++   +  ++    
Sbjct: 191 LFSATLSYRVQELAFEQMNQPEYIEVEPQQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 251 PERCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLDILVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 311 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYSLNLPAIEEYI 370

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
              +          + + +++ +LQD
Sbjct: 371 QHQIP---------VSKYNSEALLQD 387


>gi|114669834|ref|XP_001147587.1| PREDICTED: DEAD box polypeptide 42 protein isoform 4 [Pan
           troglodytes]
          Length = 775

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 97  FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 157 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 215

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 216 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 275

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 276 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 335

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 336 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 395

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 396 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 452


>gi|19074653|ref|NP_586159.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
 gi|74621115|sp|Q8SR63|RRP3_ENCCU RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|19069295|emb|CAD25763.1| putative ATP-DEPENDENT RNA HELICASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 400

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/355 (31%), Positives = 195/355 (54%), Gaps = 8/355 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + +   E+G    T VQ  ++   L   DV+  +QTGSGKT+AF L + S LL +N
Sbjct: 8   IDESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLLQKN 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F        L +APTREL+ Q+  E   ++  TG+ V + +GG + + +   L    H
Sbjct: 68  RSF------YCLVVAPTRELSSQIA-ECFNMFQATGLRVCLLVGGANFNVQANQLSKRPH 120

Query: 127 IVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ +H+ + K      ++  VLDEAD   +  F +D+E I+ S  +KR+ L+F
Sbjct: 121 VVVGTPGRIAEHVLKTKSFRTERVRKFVLDEADRFFEQDFVEDLETIIPSLREKRQTLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           +AT+S  I+ L+ +  K    +  A +      +    + VA+  +++A+V +L      
Sbjct: 181 TATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKNSALVELLEMSQGM 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + IVF S   +    +  LA   F   AL GELSQ++R  A++  ++ R  V + TD+ +
Sbjct: 241 SVIVFVSMCVTARVMSLALARLGFCSEALHGELSQEKREEAMRSFKESRFNVLVCTDLGS 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           RG+D+  ++LVI+ ++  + ++ +HR GRT RAGR G ++ ++ Q    + +++ 
Sbjct: 301 RGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSGTAITLVTQYDVEQIQKIE 355


>gi|253771020|gb|ACT35658.1| PL10-like protein [Haliotis asinina]
          Length = 775

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 194/391 (49%), Gaps = 25/391 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + ++I   ++   Y   T VQ+  +   L  +D++  AQTGSGKT AF + + +
Sbjct: 300 SFEDCELGEIIRNNIALSKYTKPTPVQKYSIPIVLGRRDLMACAQTGSGKTAAFLVPILN 359

Query: 61  TLLAENDRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            +  +     P             P+AL +APTRELA Q+  E      ++ V   V  G
Sbjct: 360 QIYDKGPGQVPQQQRQYGKRTKQYPIALVLAPTRELASQIYDEARKFAYRSRVRPCVVYG 419

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI- 169
           G  +  + RDL  G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I 
Sbjct: 420 GADIGAQMRDLDRGCHMLVATPGRLVDMVERGKIGLEYCKFLVLDEADRMLDMGFEPQIR 479

Query: 170 ---EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
              E        +R+ LMFSAT    I  LA+++ ++ V + +        +I  + V V
Sbjct: 480 LIVEKNGMPVSGERQTLMFSATFPKEIQILARDFLENYVFLAVGRVGSTSENITQKVVWV 539

Query: 227 ALSDRDNAIVN------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             +++ + +++      +         + F  T+       + L +  +   ++ G+ SQ
Sbjct: 540 EENEKRSFLLDLINASGMFSSGPESLTLTFLETKKGADALEEFLQKEGYPATSIHGDRSQ 599

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER +AL++ R G   + +AT VAARG+D+P++  VI+ +L S+ E  +HR GRTGR G 
Sbjct: 600 REREDALKVFRSGDRPILVATAVAARGLDIPNVRHVINFDLPSDIEEYVHRIGRTGRVGN 659

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G++     +   N+ R    L  EAN  V 
Sbjct: 660 LGLATSFFNEKNKNIIRDLLDLLVEANQEVP 690


>gi|195542171|gb|ACF98296.1| eIF-4A [Pennisetum glaucum]
          Length = 407

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I   +   +   G+   +++Q+  + P +  +DV+  AQ+G+GK+    L +
Sbjct: 33  VSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIAQAQSGTGKSSMISLTV 92

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  + +  +     + V  CIGG S+  + 
Sbjct: 93  CQIVD------TAVREVQALILSPTRELASQTEKVMLAVGDYLNIQVHACIGGKSISEDI 146

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+NG H+V GTPGR+CD I+ + L    +K +VLDEADEML  GF+D I  +    P 
Sbjct: 147 RRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQIYDVYRYLPP 206

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++++ SAT+   I  +   +  + VR+ +  +      I    V +     + + + +
Sbjct: 207 ELQVVLISATLPHEILEMTSKFMTEPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 266

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ QQER   +   R G  RV
Sbjct: 267 LYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQQERDAIMTEFRSGATRV 326

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  + ++  R   
Sbjct: 327 LITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRKDDIRILR 386

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 387 DIEQYYSTQIDEMPMNVADLI 407


>gi|195125432|ref|XP_002007182.1| GI12524 [Drosophila mojavensis]
 gi|193918791|gb|EDW17658.1| GI12524 [Drosophila mojavensis]
          Length = 602

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 180/381 (47%), Gaps = 12/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P      +  + Y+  T +Q       L   +++  A+TGSGKT+AF L  
Sbjct: 108 IRSFDETCFPDYCMNEIRRQRYIEPTPIQAQAWPIVLSGNNLVGIAKTGSGKTLAFILPA 167

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+        + + V      GG    ++ 
Sbjct: 168 IVHINGQ-PTLKRGDGPIALVVAPTRELAQQIQTVANDFGSSSYVRNTCIFGGAPRSKQA 226

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DLQNG  IV+ TPGRL D ++    N+     +VLDEAD MLD+GF   I  IL     
Sbjct: 227 SDLQNGVEIVIATPGRLLDFLQSGTTNLRRCTYLVLDEADRMLDMGFEPQIRKILSQIRP 286

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RD 232
            R++LM+SAT    +  LA+++  + +++NI S     +    + V V          +D
Sbjct: 287 DRQILMWSATWPKEVRQLAEDFLGNYIQINIGSLELSANHNIRQYVDVCAEHEKGSKLKD 346

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                  +       I+F +T+  V    + +      V ++ G+ SQ +R N L   R 
Sbjct: 347 LLSHIYDQSGMPGKIIIFVATKKKVDELARFINAFGVGVGSIHGDKSQMDRDNVLNDFRS 406

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S     +  
Sbjct: 407 GRANILVATDVAARGLDVDGIKYVINFDFPQSSEDYIHRIGRTGRKHSTGTSYAFFTRKN 466

Query: 353 ---QRRAERLFREANVSVVWE 370
               R    + REAN ++  E
Sbjct: 467 AKCARALIEILREANQNINPE 487


>gi|269960877|ref|ZP_06175247.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
 gi|269834317|gb|EEZ88406.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
          Length = 459

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 219/408 (53%), Gaps = 15/408 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   + E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLTPALLETLESLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRSIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD MLD+GF+D ++ I++++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLDMGFQDALDAIIEAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   Y   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEQIAQRIMQSPEMIKVESTHDTSSIAQYFYNVEGSEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F V+ L G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQNVADELHHKGFSVIDLHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +    ++ VV    P+      +  Q+  Q  +   +I G +K+ V  
Sbjct: 358 IEEYLDMDVVPATLPA------KSNQQPYQAKMVTINIDGGKKQKVRA 399



 Score = 50.4 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               ++  G KQK  A  ++  L   +GI    +G I + P   +V V         +T+
Sbjct: 384 MVTINIDGGKKQKVRAGDILGCLTGKNGITGAQVGKIHLFPMRAYVAVEKSVAKKALQTI 443

Query: 526 KLDK 529
              K
Sbjct: 444 SNGK 447


>gi|77359086|ref|YP_338661.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873997|emb|CAI85218.1| putative ATP-dependent RNA helicase; putative cold-shock protein;
           could be specific for rRNA folding [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 462

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 139/412 (33%), Positives = 224/412 (54%), Gaps = 8/412 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 11  LPSGLVDNLSTLGYTHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 71  FRI------QSLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P  R+ L+F
Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPTNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK    + V V +  E  + +   Y   +     R   +  +L     +
Sbjct: 185 SATFPRAIEAVAKRVLSNPVMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    L +  F  V+L G+L Q++R   L    +  A + +ATDVAA
Sbjct: 245 SCVVFCNTKVETQQLCDDLVDEGFSAVSLHGDLEQRDRERTLIHFSNKSASILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ + +  +HR GRTGRAG+KG++  +  +    +  ++      
Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRIGRTGRAGKKGIACSIYGEAEAFKIAQIGDHYER 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            V+ EP PS  ++ E+   +     L LDS +  + +  D+L A    + IA
Sbjct: 365 DVIPEPMPSF-SLLEKPPYKPEMVTLMLDSGKKQKVRAGDILGALTGKDGIA 415



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A   +I + G     ++ P  + S     +   +                   L  G KQ
Sbjct: 350 AEAFKIAQIGDHYERDVIPEPMPSFSLLEKPPYKPE------------MVTLMLDSGKKQ 397

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533
           K  A  ++  L    GI  + +G I V  ++ FV V    S   +  L       + I+ 
Sbjct: 398 KVRAGDILGALTGKDGIAGRQVGKINVLDNVAFVAVERNSSKPALRKLTEGNIKGRKIRA 457

Query: 534 KYL 536
           + L
Sbjct: 458 RRL 460


>gi|307245417|ref|ZP_07527505.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254371|ref|ZP_07536209.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258830|ref|ZP_07540562.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853758|gb|EFM85975.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862670|gb|EFM94626.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867181|gb|EFM99037.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 412

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/343 (32%), Positives = 185/343 (53%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  N
Sbjct: 15  IHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHYLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +   ++
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSPRVRELAYEDMDNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 DRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+  
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISF 356


>gi|190149870|ref|YP_001968395.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307249764|ref|ZP_07531742.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307263195|ref|ZP_07544815.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915001|gb|ACE61253.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306858179|gb|EFM90257.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306871412|gb|EFN03136.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 406

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/343 (32%), Positives = 185/343 (53%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL  N
Sbjct: 15  IHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTGTGKTLAFLIATFHYLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DSETNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +   ++
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSPRVRELAYEDMDNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 DRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+  
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISF 356


>gi|163802622|ref|ZP_02196513.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
 gi|159173510|gb|EDP58330.1| ATP-dependent RNA helicase DbpA [Vibrio sp. AND4]
          Length = 459

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 139/408 (34%), Positives = 219/408 (53%), Gaps = 15/408 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   + E L    Y ++T +Q   L   L ++DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLETLESLNYTHMTPIQALSLPVILNQRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+  L  +VLDEAD MLD+GF+D ++ I+D++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLDKGRINLEELNTLVLDEADRMLDMGFQDALDAIIDAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S + +   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPKKIEQIAQRIMRSPEMIKVESTHDTSSIVQHFYKVEGTEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F V+ L G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQNVADELHHKGFSVIELHGDLEQRERDQALTQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +    ++ VV    P+      +   +  Q  +   SI G +K+ V  
Sbjct: 358 IEEYLDMDVVPATLPA------KSNLQPYQAKMVTISIDGGKKQKVRA 399



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               S+  G KQK  A  ++  L    GI    +G I++     +V V         + +
Sbjct: 384 MVTISIDGGKKQKVRAGDILGCLTGKGGITGAQVGKIQLMAMRAYVAVEKSVAKKALQVI 443

Query: 526 KLDK 529
              K
Sbjct: 444 SDGK 447


>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 398

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I + +S+ GY   T++Q+  +   LR  D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSQPITDVISQLGYSKPTTIQQKAIPVILRGDDLIAAAQTGTGKTASFVLPILQKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELAVQV ++++       +      GGV    +++ L +G  
Sbjct: 66  GETQRKKRIRALILAPTRELAVQVEQKVQDYSKNLPLTSLAMYGGVDEASQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF +DI  ILD  P   + L+FS
Sbjct: 126 ILVATPGRLIDMYGKRAVHFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+      +I+   + V    +   + +++  +    
Sbjct: 186 ATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLINENDWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  RS  L   + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERREIEGFE 375


>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
          Length = 745

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 194/381 (50%), Gaps = 13/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +     + + +  Y   T VQ+  +   +  +D++  AQTGSGKT AF L +
Sbjct: 297 ISNFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPV 356

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++        FS    P AL +APTRELAVQ+  + +     T +   V  GG S+ 
Sbjct: 357 LTGMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTHGTMLRPVVLYGGTSLG 416

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R+++ GAHIVVGTPGRL D I    +++  LK ++LDEAD MLD+GF  +I+ I+  
Sbjct: 417 HQLRNVEQGAHIVVGTPGRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHE 476

Query: 176 S----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                 ++R+ LMFSAT    I  LA  +  D + + +       +D+      V    +
Sbjct: 477 LGAPPKEQRQTLMFSATFPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPRDQK 536

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + +IL   G    +VF   + +       L++  F   ++ G+  QQER  AL+  +
Sbjct: 537 RQKLCDILSESGTDKTLVFVEQKRNADFLATYLSQSGFPTTSIHGDRLQQEREEALRDFK 596

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GRA + +AT VAARG+D+P ++ VI+ +L  + +  +HR GRTGR G  G S      +
Sbjct: 597 TGRAPILVATSVAARGLDIPLVKHVINYDLPQSIDEYVHRIGRTGRCGNVGKSTSFYTDD 656

Query: 352 ----MQRRAERLFREANVSVV 368
               + +   R+  +A   V 
Sbjct: 657 SDGGIAKALLRILADAQQEVP 677


>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
 gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
          Length = 388

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 178/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+   GY   T++Q   +   L+  D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSQPLTQAIQSLGYSKPTTIQTKAIPAILQGDDLIAAAQTGTGKTASFVLPILEKL--AK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+ +++        +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRVRALILTPTRELAQQIEQKVRDYGQNLSLTSLAMYGGVDEKPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D    + ++   ++ +V+DEAD MLD+GF DDI  ILD  P   + L+FS
Sbjct: 126 ILIATPGRLLDMYGKRAVHFEEIEVLVMDEADRMLDMGFIDDINKILDRLPTDIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITVDKDKKSALLSHMIKENNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A     SQ  RS  L   + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLLADFKAGKIKYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA  +G ++  + ++  +    +       
Sbjct: 306 GIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIEARLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVIEGFE 375


>gi|206578204|ref|YP_002241152.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288937791|ref|YP_003441850.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290513187|ref|ZP_06552549.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
 gi|226739540|sp|B5XYY9|RHLB_KLEP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|206567262|gb|ACI09038.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae 342]
 gi|288892500|gb|ADC60818.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289774398|gb|EFD82404.1| ATP-dependent RNA helicase RhlB [Klebsiella sp. 1_1_55]
          Length = 421

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|323335994|gb|EGA77270.1| Has1p [Saccharomyces cerevisiae Vin13]
          Length = 505

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 214/468 (45%), Gaps = 17/468 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   Q   +A+ + G+  +TSVQ   + P L   DVL +A+TGSGKT+AF +  
Sbjct: 41  VEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGXDVLGAAKTGSGKTLAFLIPA 100

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + +F P +    + I PTRELA+Q+      L         + IGG +  +E 
Sbjct: 101 IELL--HSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEA 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G ++++ TPGRL DH++        +LKA+++DEAD +L++GF D++  I+   P
Sbjct: 159 EKLMKGVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILP 218

Query: 178 KKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            + R  M  +            ++       + V   ++N     ++   V+     R  
Sbjct: 219 NEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFL 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      + 
Sbjct: 279 LLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNA 338

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNM 352
              + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  N 
Sbjct: 339 ERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + + V +     P  + A  +   +++++   +L     D  +      A H
Sbjct: 399 LGFL-RYLKASKVPLNEYEFPENKIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASH 457

Query: 412 DPEKIAA----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             + +         ++ ++ G   P ++      SG+       +  K
Sbjct: 458 SLKTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPNTKRRKTHK 505


>gi|288555762|ref|YP_003427697.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288546922|gb|ADC50805.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 454

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 184/366 (50%), Gaps = 11/366 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K FE +   + EALS + +   T +QE ++      KDV+  +QTG+GKT++F L +  
Sbjct: 6   FKRFE-LKPFLIEALSGQRFSLPTEIQERLIPAIKNGKDVIGQSQTGTGKTLSFLLPILD 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA----VCIGGVSVHR 116
            +    +         A+  APTRELA Q+  EL+ L             + +GG   +R
Sbjct: 65  KIDPAKEEV------QAIITAPTRELASQLFDELKKLLEHCPEEEMIHAKLLVGGTDRNR 118

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   HIVVGT GR+ D +  K L +     +V+DEAD+MLD+GF  D++ +    
Sbjct: 119 AIEGLKTQPHIVVGTAGRIGDLMDDKALLVYTAAMLVVDEADQMLDMGFIADVDKVASRM 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            +  +M++FSATI   +    K Y  D   V +  ++   S I++R V +   D+    V
Sbjct: 179 AEDLQMMIFSATIPEKLQPFLKKYMNDPRHVQVEPKHVTASKIEHRIVPLRNRDKLTFTV 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      AIVF +T+      T  + E    V  L G L  ++R   ++ +++ + +
Sbjct: 239 ELAKSINPYFAIVFTNTKEQADEVTAAMQEAGLNVECLHGGLQPRQRKQIMKQVKEVKMQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  +I+  L  + +  +HR GRT RAG  G++  +  QN Q   
Sbjct: 299 YLVATDLAARGIDVKGVTHIINFGLPKDLDFYVHRVGRTARAGADGVAYTIFEQNDQLAV 358

Query: 357 ERLFRE 362
           E+L + 
Sbjct: 359 EKLLKR 364


>gi|60501853|gb|AAX22126.1| vasa [Carassius auratus]
          Length = 688

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 250 IMTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 309

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 310 LQRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTG 369

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +I+ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 370 YTIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGS 429

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   + V    
Sbjct: 430 PGMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYS 489

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++++LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 490 KRDQLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDF 549

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ +L S+ +  +HR GRTGR G    +V    P
Sbjct: 550 RTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFFNP 609

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 610 ESDTPLARSLAK 621


>gi|60501851|gb|AAX22125.1| vasa-2 [Carassius auratus]
          Length = 677

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 239 IMTFDEAGLCESLRKNVTKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPI 298

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              L+A+     +FS    P A+ +APTREL  Q+  E       T V   V  GG++  
Sbjct: 299 LQRLMADGVAASKFSEVQEPEAIIVAPTRELINQIYLEAGKFAYGTCVRPVVVYGGINTG 358

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
              R++  G +I+ GTPGRL D I    + +S L+ +VLDEAD MLD+GF  D+      
Sbjct: 359 YTIREVLKGCNILCGTPGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGS 418

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             + S   ++ ++  +          A   + D + + +       SD++   + V    
Sbjct: 419 PGMPSKEDRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIIQVDQYS 478

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + ++++LR  G +  +VF  T+ S       L +      ++ G+  Q+ER  AL   
Sbjct: 479 KRDQLLDLLRSTGTERTMVFVETKRSADFIATFLCQEKLSTTSIHGDREQREREKALSDF 538

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R G+  V +AT VAARG+D+  ++ V++ +L S+ +  +HR GRTGR G    +V    P
Sbjct: 539 RTGQCPVLVATSVAARGLDIEQVQHVVNFDLPSSIDEYVHRIGRTGRCGNIRRAVSFFNP 598

Query: 350 QNMQRRAERLFR 361
           ++    A  L +
Sbjct: 599 ESDTPLARSLAK 610


>gi|94265968|ref|ZP_01289692.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93453471|gb|EAT03884.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 369

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/368 (30%), Positives = 184/368 (50%), Gaps = 6/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    +   ++  GY   T +Q   +    R +D++  AQTG+GKT AF L L   L   
Sbjct: 7   DFDATLTANIAACGYQAPTPIQTQAIPEIRRGRDIMGLAQTGTGKTAAFVLPLLQKL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P     A+ +APTRELA Q+   +  L  +TG+      GGVS   + +  + G 
Sbjct: 64  --SAGPRGRVRAVIVAPTRELAEQIHVNIGELGRQTGIRSVAVYGGVSKFGQLKAFKAGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V  PGRL DH+  + +N+  ++ +VLDEAD M D+GF   I+ +L   P KR+ L+F
Sbjct: 122 EIIVACPGRLLDHLDSRDVNLGAVEMLVLDEADMMFDMGFMPAIKKLLKYLPAKRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA +  KD  RV I    +  + + ++   V    +   +  +++     
Sbjct: 182 SATMPAEIRHLADSILKDPARVQIN-HTQPTALVAHKLYRVEKQGKGALLKQVMQESAFS 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VF  T+ +  +    L +   + VAL G +SQ +R  A++  + GR  + +ATD+AA
Sbjct: 241 SALVFTRTKHAAKKLALNLEKAGHRAVALQGNMSQNKRKAAMEGFKQGRFNIMVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++ +  E   HR GRTGRA R G +        +    ++ R    
Sbjct: 301 RGIDVAGISHVINYDMPATVEAYTHRIGRTGRAERNGEAYTFATAEDKVIVRQIERAIGS 360

Query: 366 SVVWEPAP 373
            ++    P
Sbjct: 361 RMITLETP 368


>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 542

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 198/396 (50%), Gaps = 23/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L          
Sbjct: 55  LSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQ 114

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 115 KAQASQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 174

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +
Sbjct: 175 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIE 234

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DIE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I        
Sbjct: 235 DIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVD 294

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 295 DRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 354

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 355 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 414

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           ++    Q   +R+ R     +   P   VE    R 
Sbjct: 415 LVHHAEQGALKRIERFVRTPL---PVNVVEGFEPRK 447


>gi|242051919|ref|XP_002455105.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
 gi|241927080|gb|EES00225.1| hypothetical protein SORBIDRAFT_03g004420 [Sorghum bicolor]
          Length = 673

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 104/375 (27%), Positives = 178/375 (47%), Gaps = 9/375 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++   P  I   + + G+   T +Q       ++ +D++  A+TGSGKT+ + L    
Sbjct: 158 TFQSTGFPSEILREVLQAGFSAPTPIQAQSWPIAIKGRDIVAVAKTGSGKTLGYLLP--G 215

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +  + +    P  L ++PTRELA Q+  E       + +      GG     + R+
Sbjct: 216 FILLKRLQHNSREGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRE 275

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA +VV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+   P +R
Sbjct: 276 LERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPPRR 335

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    +   +  I     ++   ++   +  I
Sbjct: 336 QTLMYTATWPKEVRRIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLDQI 395

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + I+   +   +           +   A+ G+ SQ ER + L   R GR  V 
Sbjct: 396 LRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQSERDSVLNDFRSGRCPVL 455

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G +         + A  
Sbjct: 456 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYASD 515

Query: 358 --RLFREANVSVVWE 370
             ++   AN SV  +
Sbjct: 516 LVKILEGANQSVPQQ 530


>gi|167625498|ref|YP_001675792.1| ATP-dependent RNA helicase DbpA [Shewanella halifaxensis HAW-EB4]
 gi|167355520|gb|ABZ78133.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 469

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 195/369 (52%), Gaps = 7/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L + L  +
Sbjct: 18  NLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVK 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GGV +  +   L++G
Sbjct: 78  RFRI------QTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHG 131

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    L++ ++  +VLDEAD ML++GF+ ++E I++  P +R+ L+
Sbjct: 132 AHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTLL 191

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++A       V V +AS +   +   +   +   +DR  A+  +L  +  
Sbjct: 192 FSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLLQYRP 251

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A+VFC+T+         L    F VVAL G+L Q++R   L    +    + +ATDVA
Sbjct: 252 ESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVA 311

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+  ++ + E  +HR GRTGRAG KG +          +   L     
Sbjct: 312 ARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLEDYLE 371

Query: 365 VSVVWEPAP 373
             +V E  P
Sbjct: 372 RDIVNEALP 380



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 22/64 (34%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G KQK     ++  L    GI    +G I++    ++V V+          +
Sbjct: 394 MITLQIDGGKKQKLRPGDILGALTGEDGIEGSEVGKIKITDMRSYVAVNRKVAKKALHKI 453

Query: 526 KLDK 529
              K
Sbjct: 454 TNGK 457


>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 397

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/370 (31%), Positives = 185/370 (50%), Gaps = 3/370 (0%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+     + I + +S +GY   T +Q+  +   +   D+L  AQTG+GKT AF L +
Sbjct: 1   MSEFKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +         + A +  +L + PTRELA Q+ + ++      G+   V  GGV    + 
Sbjct: 61  INNFGRNKIDIN-AKSTRSLILTPTRELASQIMQNIDDYADGLGLKTKVVYGGVGRQNQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  G  I+V TPGRL D I+   +N   L+  VLDEAD MLD+GF  D++ I+   PK
Sbjct: 120 DSIALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTMLDMGFFKDVQRIISKLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  LA     D  ++ I +E      I+     +  S++   ++NI
Sbjct: 180 NRQTLLFSATMPAEIEILADAILTDPTKIQITAETVTIERINQSVYHLEKSNKVPLLLNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K  ++FC T+       + L E      +L    +Q  R  ALQ  +D    V 
Sbjct: 240 LEKSHYKKVLIFCKTKPGADIIVEALEEASITAASLHSGKTQAVREEALQNFKDSNLSVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+  L  +P N +HR GRT RAG+ G+++    +N       
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGIAISFAVENDITLLNS 359

Query: 359 LFREANVSVV 368
           + +    ++ 
Sbjct: 360 IEKSIGKAIP 369


>gi|317494807|ref|ZP_07953218.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917132|gb|EFV38480.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 429

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 192/387 (49%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKTLAFLASTFHYLLTHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L  +TG+ + +  GG    ++ + L++G 
Sbjct: 76  VAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQGHIDLGCIQVVVLDEADRMFDLGFIKDIRWLFRRMPATNQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT+S  +  LA  +  +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 MFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGNLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLACEEYVLNLPAIEAYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+      S   + +  A + L  P
Sbjct: 376 EHSIPVSKYNSEALLTDLPAPKRLTRP 402


>gi|255081552|ref|XP_002507998.1| predicted protein [Micromonas sp. RCC299]
 gi|226523274|gb|ACO69256.1| predicted protein [Micromonas sp. RCC299]
          Length = 481

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 182/373 (48%), Gaps = 13/373 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N+   I   +  + +   T +Q   +      +DVL  A+TGSGKT AF + +
Sbjct: 47  IESFEDMNLDTKIMMDIKYKEFDKPTPIQAQAIPVICSGRDVLGCAETGSGKTAAFSIPM 106

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               L +         P A+ +APTRELA Q+ +E +     + G    + +GG ++  +
Sbjct: 107 IQHCL-QQPEIKRGDGPFAIVMAPTRELAQQIEKEAKIFSRSSKGFKTTIVVGGTNMSEQ 165

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R DL+NG  + V TPGRL DH+     N++ +  V+LDEAD MLD+GF   I  ++ + P
Sbjct: 166 RMDLKNGVEVCVATPGRLIDHLHQGNTNLARVSLVILDEADRMLDMGFEPQIREVMMNLP 225

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   +  LA +Y    V+V + + +   S++      +  S + + +  
Sbjct: 226 KPHQTLLFSATMPVEVEALAADYLNKPVKVKVGAVSVPTSNVAQHLEKLVDSQKVDRLCE 285

Query: 238 ILRYHGAK---------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L    A+           +VF   +A       +L        A  G  SQQER  AL 
Sbjct: 286 LLLEEKAEAEKFGGQLPMTVVFVERKARADEIMTLLNAEGVAAAAFHGGRSQQEREAALA 345

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               GR  V +ATDVAARG+D+  ++ V++ +L    E+ +HR GRTGRAG  G +    
Sbjct: 346 DFTTGRCAVLVATDVAARGLDVKGVQHVVNLDLPRMFEDYVHRVGRTGRAGMTGRATSFY 405

Query: 349 PQNMQRRAERLFR 361
                    ++ R
Sbjct: 406 TDRDSFLVAQIKR 418


>gi|255657870|ref|ZP_05403279.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
 gi|260850060|gb|EEX70067.1| ATP-dependent RNA helicase DeaD [Mitsuokella multacida DSM 20544]
          Length = 441

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/401 (29%), Positives = 204/401 (50%), Gaps = 19/401 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +     + + L   G    T VQE  +       D +V AQTG+GKT+AF L +
Sbjct: 1   MTTFQELGIRPALCDVLRSHGIKEATPVQEKAMPLVRAGHDCIVKAQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +      A+   AL I PTRELA+Q+ +  + L A   +   V  GG  + R++
Sbjct: 61  IEKIKPQ------AAVTQALVITPTRELAIQIAKVAQSLSAAADISSLVIFGGQDIERQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+    +++GTPGRL DH+R + +++S +  VVLDEADEM+ LGF +D+E +L+++  
Sbjct: 115 QKLRRHPQLIIGTPGRLLDHLRRQTIDLSQVNKVVLDEADEMMRLGFIEDVETLLEATAA 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R++++FSAT+   +  L+  Y      + I SE+     ID   +      + + +  I
Sbjct: 175 DRQLMLFSATMPDRVKALSARYMTAPQNLEIKSEHVTLDAIDQVIIDTREETKIDKLCEI 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +       A+VFC T+      T  LA   + V  L G+LSQ +R+  L+  R    ++ 
Sbjct: 235 INQEQPYLAMVFCHTKQRAHMVTMALAARGYLVDELHGDLSQVQRTLVLKRFRKAELQIL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATD+AARG+D+  +  V + ++  + E+ +HR GRTGRAG +G ++  +         R
Sbjct: 295 CATDIAARGLDIEGVTHVFNYDIPHDAESYIHRIGRTGRAGERGKAITFVNARQYDLLRR 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
           +  E  +          + IR++ ++R  +     + I  +
Sbjct: 355 I--EGGIK---------DRIRKQRSERGRRHKEKQEQILKE 384


>gi|156932881|ref|YP_001436797.1| ATP-dependent RNA helicase SrmB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531135|gb|ABU75961.1| hypothetical protein ESA_00682 [Cronobacter sakazakii ATCC BAA-894]
          Length = 444

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/394 (30%), Positives = 188/394 (47%), Gaps = 6/394 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     + +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDDSLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ L+FSAT           +  ++        S   +     +      +  +   +V
Sbjct: 181 RKQTLLFSATLEGDAIKDFAERLLEEPVEVSATPSTRERKKIHQWYYRADNIEHKTALLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L E       L GE+ Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQVKRNEAIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARGID+PD+  V + ++    +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNYDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            ++ R  N  +       +       ++++   P
Sbjct: 361 GKVGRYLNEPLKARVIDELRPTTRAPSEKLTGKP 394


>gi|89902343|ref|YP_524814.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89347080|gb|ABD71283.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 421

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 201/372 (54%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S++ +   T +Q   + P L+ +D+L SAQTGSGKT AF L L      E 
Sbjct: 8   LSPALLRAISDQAWSAPTPIQAVAMGPALQGRDLLASAQTGSGKTAAFALPLLQQ--FEA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNG 124
                     AL + PTREL+ QVG E+ +L         V++  GGVS++ +   L+ G
Sbjct: 66  AVPQSPRRLRALILVPTRELSTQVGEEIRFLGQHLPRALKVSIVFGGVSINPQMLRLRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D I    L++S +  +VLDEAD +LDLGF +++  IL   P +R+ L 
Sbjct: 126 ADIVVATPGRLLDLIDHNALSLSGVATLVLDEADRLLDLGFAEELNRILALLPVQRQNLF 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PA+ TLA+   +D VR+ +A E +   DI+ R + V  + R   + +++  H  
Sbjct: 186 FSATFPPAVQTLAQVLLRDPVRIEVAPEPQTQPDIEQRVIEVDAAQRTQLLRHLMAQHHW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+ +       L +         GELSQ +R+  L   +  R +V +ATDVA
Sbjct: 246 SRVLVFVATKHAAEMVADKLRKARINAEPFHGELSQGKRTQVLADFKASRLKVVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +V++ +L  +  + +HR GRTGRAG KG+++  +          + +   
Sbjct: 306 ARGLDIAQLPVVVNFDLPRSALDYIHRIGRTGRAGEKGVALSFVSAATDAHWRLIEKRQG 365

Query: 365 VSVVWEPAPSVE 376
           +S+  E  P  E
Sbjct: 366 LSLPREQVPGFE 377


>gi|302753758|ref|XP_002960303.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
 gi|302767980|ref|XP_002967410.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300165401|gb|EFJ32009.1| hypothetical protein SELMODRAFT_168957 [Selaginella moellendorffii]
 gi|300171242|gb|EFJ37842.1| hypothetical protein SELMODRAFT_75384 [Selaginella moellendorffii]
          Length = 575

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +   I + ++   Y N T +Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 128 VETFEDMCLHANIMKDIAFHEYTNPTPIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPM 187

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               LA+         PLAL +APTRELA Q+ +E+      T G   A+ +GG  +  +
Sbjct: 188 IQHCLAQPP-IRHGDGPLALVLAPTRELAQQIEKEVRAFSRSTDGFKTAIVVGGTHIGEQ 246

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L++G  +VV TPGR  DH++    ++  +  VVLDEAD MLD+GF   I+ ++ + P
Sbjct: 247 RSELRSGVQVVVATPGRFIDHLQQGNSSLLRVSYVVLDEADRMLDMGFLPQIKEVMQNLP 306

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KK + L+FSAT+   I  LA+ Y    V+V +   +   S++      V   D+ + ++ 
Sbjct: 307 KKHQTLLFSATMPEEIEALAQEYLTKPVQVKVGKVSSPTSNVLQSLEKVDEKDKIDYLLA 366

Query: 238 ILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L                 IVF   +A        L     +  AL G  +Q ER  AL+
Sbjct: 367 MLVESSNQSERAGQPPPLTIVFVERKARCDDVADALLAQGLKAAALHGGRTQGEREAALR 426

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVA+RG+D+  +  V++ +L    E+ +HR GRTGRAG  G +  + 
Sbjct: 427 DFRKGAISILVATDVASRGLDVTGVAHVVNLDLPKVMEDYVHRIGRTGRAGASGRATSLY 486

Query: 349 PQNMQRRAERLFR 361
                    ++ +
Sbjct: 487 TDRDAFLVAQIRK 499


>gi|283787538|ref|YP_003367403.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282950992|emb|CBG90669.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 421

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 514

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 193/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+ ++P+ R+ ++FSAT+   I +L     +D  R+ I       ++I      
Sbjct: 223 IEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLRDPERIEIQQRLESRANIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 403 VSLVHHAEQGALKRIER-----FVRSPLP 426


>gi|167041390|gb|ABZ06143.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
           HF4000_005K23]
          Length = 427

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 199/373 (53%), Gaps = 11/373 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F   N+ + +  +++   +   T +Q   + P L  KD+L +AQTG+GKT+ +G+A 
Sbjct: 1   MENFSELNLNESLKHSIARMYFKIPTPIQAQAIPPALLGKDILGTAQTGTGKTLCYGIAC 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
            + LL +           AL I PTRELAVQVG  L  L   T  +  AV IGG S+ ++
Sbjct: 61  INKLLNDRGSN-------ALIICPTRELAVQVGDVLNGLIENTMNIKSAVLIGGESMQKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ    +++GTPGRL DH++ K L +     +VLDE D MLD+GF   +E IL   P
Sbjct: 114 LRQLQKRPRLIIGTPGRLNDHLKRKSLKLHQSYFLVLDETDRMLDMGFIPQVEQILKFVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KK + L+FSAT+   I  + + Y  D +R+ + S     S I    + V+  D+ N  + 
Sbjct: 174 KKHQTLLFSATLPQNILKITERYLNDPIRIRVGSTTTPISKIKQEVIQVSEGDKYNK-LQ 232

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              Y    + ++F  T+ +  +    L +   +   + G L Q +R   L   R G+ R+
Sbjct: 233 EELYKRKGSILLFVKTKRNADKMADRLHDDGHRCDCMHGNLRQSKRQRTLIAFRSGKIRI 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+T++A+RG+D+P ++ VI+  L   PE+ +HR GRT RAG +G ++  I  N ++   
Sbjct: 293 LISTELASRGLDVPSIQHVINYHLPQVPEDFIHRIGRTARAGAEGCALTFITPNDRQMWN 352

Query: 358 RLFREANVSVVWE 370
            + R  N +V  E
Sbjct: 353 GIQRLINPNVKQE 365


>gi|119614684|gb|EAW94278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_c [Homo
           sapiens]
          Length = 936

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 258 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 317

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 318 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 376

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 377 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 436

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 437 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 496

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 497 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 556

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 557 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 613


>gi|332243110|ref|XP_003270725.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Nomascus leucogenys]
          Length = 938

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
          Length = 397

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 183/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A++E GY   T++Q   +   L+ +D++ +AQTG+GKT +F L +   L  + 
Sbjct: 8   LSEALTQAVAELGYQKPTTIQTKAIPVILQGQDLIAAAQTGTGKTASFVLPILHKL--QG 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA+QV  ++      TG+      GGV    +++ L  G  
Sbjct: 66  RETQRKKRIRALILVPTRELAIQVADKVAQYGQHTGLTTLAMYGGVEEQAQKQRLIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF D I  I+D  P+  + L+FS
Sbjct: 126 VLVATPGRLLDMYGQRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDAQYLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+     S+I+   + V    +   + +++  +    
Sbjct: 186 ATLSHKVRDLAKTAVNDPFEISIAANQASKSNIEQWLITVDKDKKSALLSHLITENNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L+  + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKIKYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ +L    +  +HR GRTGRA  KG ++  + ++  +    +       
Sbjct: 306 GIDIHELSRVVNYDLPFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|3986285|dbj|BAA34993.1| DjVLGA [Dugesia japonica]
          Length = 726

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 191/376 (50%), Gaps = 14/376 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++   +S   Y   T VQ   +   ++ +D++  AQTGSGKT AF + L S +  + 
Sbjct: 218 LHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLLSMMYQDG 277

Query: 67  DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
              S + +      P+AL +APTRELAVQ+  E      ++ V   V  GG  +  + +D
Sbjct: 278 PGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFSYRSLVRPCVVYGGRDIRGQLQD 337

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +  G +++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I  I++ +    
Sbjct: 338 ISQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIVEQTNMPP 397

Query: 181 RML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                  MFSAT    I  LA ++ KD + + +        +I  R V V  +++ + ++
Sbjct: 398 PGQRQTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDENEKRDHLL 457

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +IL    + +  +VF  T+         L      V ++ G+ SQ +R  ALQ  R+G  
Sbjct: 458 DILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELALQSFREGST 517

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---NM 352
            + +AT VAARG+D+P+++ VI+ +L ++ E  +HR GRTGR G  G ++        N+
Sbjct: 518 PILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISFYTDKNNNV 577

Query: 353 QRRAERLFREANVSVV 368
            +    +  EAN  V 
Sbjct: 578 AKELVDILLEANQIVP 593


>gi|319427184|gb|ADV55258.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 413

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 4/354 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +   ++E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +  
Sbjct: 2   SFSSLSLNATLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILH 61

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+A+N   +        AL + PTRELAVQV +        T + + +  GGVS+  + 
Sbjct: 62  LLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQV 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G  +++ TPGRL DH+R   LN++ L  +V DEAD MLD+GF D+I  +L   PK
Sbjct: 122 DVFKTGIDVLIATPGRLLDHLRQGVLNLNQLTTLVFDEADRMLDMGFMDEINAVLKQVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+  AI  L+K+  ++   + +   N   + ++ R   +    +   + ++
Sbjct: 182 DRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R +     ++F  T+  V R  + L +      A  G+LSQ  R   LQ  + G  +V 
Sbjct: 242 IRSNHWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           +ATDVAARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q  
Sbjct: 302 VATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355


>gi|114777669|ref|ZP_01452629.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551885|gb|EAU54419.1| putative ATP-dependent RNA helicase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 193/371 (52%), Gaps = 5/371 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   I   + + L   G+   T +Q   +   +  +DVL  AQTG+GKT AF + +
Sbjct: 1   MK-FDRYYICADLKKNLRALGFKRTTDIQFKAIPSIMEGEDVLAIAQTGTGKTAAFAIPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       S +     + + PTRELA+Q+G+  E L   T V V    GGV   R+ 
Sbjct: 60  IDKI-HRFKTNSQSYGIKCIVMVPTRELALQIGKVFESLANHTRVKVFTLHGGVEQERQI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ+G  +++ TPGR+ D I  + + +  +  +VLDEAD MLDLGF +DI +I     K
Sbjct: 119 AKLQDGIDVLIATPGRMFDLINQQAIRLEGVSTLVLDEADHMLDLGFIEDIRYIKKMLKK 178

Query: 179 KRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K + L FSATI+  I        + +A+R+ ++ E+R   ++ +  + V + D+   +  
Sbjct: 179 KHQTLFFSATINDEIKKLAYSQVKSEAIRIQVSPEDRIAKNVSHFVMFVEMDDKRFFLDR 238

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ H     IVF  TR    R  + +A   F  V++ G+  Q ER+ A+Q  R G  RV
Sbjct: 239 FLQDHPEGKVIVFVRTRVRAERVVRAMARAGFDTVSIHGDKDQDERATAMQAFRKGDCRV 298

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV+ARGID+PD++ VI+ +L   PEN +HR GRTGR  + G ++       +   E
Sbjct: 299 LIATDVSARGIDVPDVDFVINYDLPEKPENYVHRVGRTGRGMKLGDAISFCSSEEKPLLE 358

Query: 358 RLFREANVSVV 368
            +       + 
Sbjct: 359 AIEDFIAKPIE 369


>gi|73965191|ref|XP_861211.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 3 [Canis familiaris]
          Length = 533

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 97  FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 157 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 215

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 216 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 275

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 276 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 335

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 336 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 395

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 396 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 452


>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 193/375 (51%), Gaps = 18/375 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++     + + L+  GY   T +Q   +   L  +D++  AQTGSGKT AF L +   
Sbjct: 13  FSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILHK 72

Query: 62  LLAENDRFSPAS----------------APLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           L     R    +                A  AL + PTRELA+QV          T +  
Sbjct: 73  LTEPLLRLDEKNQQESEAPSCSQVPAIRAIRALVLTPTRELALQVHGSFVKYAKLTQLKS 132

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           A+  GGVS+  + + L  G  I+V TPGRL DH+R   +++S L+ +V DEAD MLD+GF
Sbjct: 133 ALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELEFLVFDEADRMLDMGF 192

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           +D+I+ I+   PK R+ L+FSAT   ++  L+++  +D  R+ +   N    +I+ R   
Sbjct: 193 KDEIDAIVKQLPKTRQTLLFSATFDESLYGLSQSLLRDPKRIEVGERNAAAVEIEQRVYA 252

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V    +   I +++     +  ++F   + +  +    L +      A  G+LSQ  R  
Sbjct: 253 VDSDRKLALITHLIESGKLQQVLIFSRKKVAADKLAANLTKAGIGAQAFHGDLSQGAREK 312

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            LQ  +DG  RV +ATDVAARGID+ DL  V++ EL    E+ +HR GRTGRAG KG+++
Sbjct: 313 VLQSFKDGEVRVLVATDVAARGIDIIDLNYVVNYELPYKAEDYVHRIGRTGRAGNKGVAI 372

Query: 346 FVIPQNMQRRAERLF 360
            ++ +  +   E + 
Sbjct: 373 TLLCREDEHLLEEVE 387


>gi|120602237|ref|YP_966637.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120562466|gb|ABM28210.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris DP4]
          Length = 462

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL   GY   T VQ   + P L  +DVL  A TG+GKT AF L +  
Sbjct: 2   TFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+       P  A  AL +APTRELA Q    +  L + + +      GGV V  +   
Sbjct: 62  RLMD-----GPRGAVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVG PGRL DHIR   L++S L+ +VLDE D + DLGF  D+  +L   P   
Sbjct: 117 LRAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPTTC 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  A+  LA                +  S + +    V    R   +   LR
Sbjct: 177 QRMLFSATMPDAVRVLAAEA-LRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  TR    R  + L    F V  L G+LSQ+ R  AL+  RDGR  V +A
Sbjct: 236 SGPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++ S  +  +HR GRTGRA R G ++  +    + +   + 
Sbjct: 296 TDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRNIE 355

Query: 361 REANVSVVWEPAPSVE 376
           R     +  E     +
Sbjct: 356 RALGTVIPRERLADFD 371


>gi|51258614|gb|AAH78667.1| DDX42 protein [Homo sapiens]
          Length = 919

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 241 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 300

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 301 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 359

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 360 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 419

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 420 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 479

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 480 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 539

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 540 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 596


>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
 gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
          Length = 770

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 120/415 (28%), Positives = 197/415 (47%), Gaps = 12/415 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 168 NLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFR 227

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELA QV   +E L   T +   + +GG+S   +   L++  
Sbjct: 228 PKRVP---AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMP 284

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  V+LDEAD +L+LGF  +I+ ++   PK+R+ ++
Sbjct: 285 DIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPKRRQTML 344

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  I  L K      VR+      ++ + +    V +  +   N     + +   
Sbjct: 345 FSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVVRIRRARESNQEAVLLALCLK 404

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++ I+F  T+ S  R   +      +   L G L+Q +R  AL++ R       IAT
Sbjct: 405 TFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFRKQEVDFLIAT 464

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  ++ VI+     + +  LHR GRT RAGR+G +V  +  + +   + + +
Sbjct: 465 DVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAK 524

Query: 362 EANVS-----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           +A        V  +P      + E+   +I          +   K  +++  A++
Sbjct: 525 KAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREERVEREARKAEMEIAKAEN 579


>gi|170064174|ref|XP_001867417.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
 gi|167881558|gb|EDS44941.1| ATP-dependent RNA helicase p62 [Culex quinquefasciatus]
          Length = 663

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 182/368 (49%), Gaps = 7/368 (1%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  I   ++ +GY   T +Q    +     +D++  A+TGSGKT+A+ L     
Sbjct: 80  FEEGGFPSSILAEITRQGYKEPTQIQAVGWSIATSGRDMVGIAKTGSGKTLAYILPALIH 139

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R      P+AL +APTRELA Q+ +  +    +  V+     GG S   +  DL
Sbjct: 140 ISNQ-PRLMRGDGPIALVLAPTRELAQQIQQVCDDFGRRMSVMNTCIFGGASKMGQANDL 198

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+
Sbjct: 199 RRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQ 258

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
           +LM+SAT    I  LA+ + +D +++NI S N   ++   + +          R   ++ 
Sbjct: 259 VLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIECCQEYEKESRLFKLLA 318

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +   G   AIVF  T+  V +   ++  + ++   + G+ +Q++R   L   R     +
Sbjct: 319 EIGKQGDNKAIVFVETKRKVDQIAGIIKRNGWRADGIHGDKTQKDRDYVLNTFRRMNNGI 378

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG +          +A 
Sbjct: 379 LVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTAYTFFTPANSSKAN 438

Query: 358 RLFREANV 365
            L +    
Sbjct: 439 DLIQVLKT 446


>gi|314927518|gb|EFS91349.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|328907794|gb|EGG27557.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium sp.
           P08]
          Length = 536

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 33  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 92

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 93  QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQDISTAASVRGARVLTVYGGVGYE 152

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   LQ G  +VVGTPGRL D  + K L++SH+  VVLDEADEMLDLGF  D+E ++  
Sbjct: 153 PQIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGR 212

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 213 TPTPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 272

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ + A+  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 273 IIGRILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHG 332

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 333 DVTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADV 392

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 393 TRWKLIDKALNLELSE 408


>gi|308188835|ref|YP_003932966.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
 gi|308059345|gb|ADO11517.1| putative ATP-dependent RNA helicase [Pantoea vagans C9-1]
          Length = 430

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 182/365 (49%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L+ G 
Sbjct: 76  AAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLKVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+V T GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPATQRLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPSIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|147785805|emb|CAN62124.1| hypothetical protein VITISV_037577 [Vitis vinifera]
          Length = 398

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 109/376 (28%), Positives = 190/376 (50%), Gaps = 10/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   +   G+   +++Q+  + P ++ +DV+  AQ+G+GKT    L +   +   N
Sbjct: 29  IKDDLLRGIYAYGFEKPSAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSN 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL ++PTRELA Q  + +  +     +    CIGG SV  + R L+ G H
Sbjct: 89  REV------QALILSPTRELASQTEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVH 142

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV GTPGR+CD I+ + L    +K +VLDE+DEML  GF+D I  +    P + ++++ S
Sbjct: 143 IVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLIS 202

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D VR+ +  +      I    V +     + + + ++       
Sbjct: 203 ATLPNEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ +  + F V ++ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 263 QAVIFCNTKRKVDWLTEKMRSNNFTVSSMHGDMPQKERDAIMAEFRSGTTRVLITTDVWA 322

Query: 306 RGIDLP---DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           RG+D+     + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  +    + + 
Sbjct: 323 RGLDVQQASHVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQY 382

Query: 363 ANVSVVWEPAPSVEAI 378
            +  +   P    + I
Sbjct: 383 YSTQIDEMPMNVADLI 398


>gi|157817897|ref|NP_001100529.1| ATP-dependent RNA helicase DDX42 [Rattus norvegicus]
 gi|149054552|gb|EDM06369.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 (predicted) [Rattus
           norvegicus]
          Length = 929

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
 gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           HI2424]
          Length = 516

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 193/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 43  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 102

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 103 KTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 162

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 163 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 222

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 223 IEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 282

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 283 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 342

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 343 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 402

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 403 VSLVHHAEQGALKRIER-----FVRSPLP 426


>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
 gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
          Length = 397

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKETKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|156389591|ref|XP_001635074.1| predicted protein [Nematostella vectensis]
 gi|156222164|gb|EDO43011.1| predicted protein [Nematostella vectensis]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 122/398 (30%), Positives = 206/398 (51%), Gaps = 16/398 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +       G    T +Q   + P L+ +D +  A+TGSGKT AF L +   L  + 
Sbjct: 14  LNKWLVSQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+ + PTRELA Q+  + + L    G+  AV +GG+ + ++   L N  H
Sbjct: 74  ------YGIFAVVLTPTRELAFQIADQFKVLGRPIGLKEAVIVGGLDMMKQALSLANKPH 127

Query: 127 IVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +V+ TPGRL DHI+     N+  ++ +VLDEAD +LD  F DD++ I D+ P+KR+ L+F
Sbjct: 128 VVIATPGRLADHIKSTDTLNLKKIQFLVLDEADRLLDPSFGDDLKVIFDAVPEKRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L K          + S+    +++D R +L     RD  +V++LR +   
Sbjct: 188 SATLTDTMGELQKMSGSQPFSYEVQSDIATVAELDQRYLLTPAHVRDCYLVHLLRENDDN 247

Query: 246 N-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T  +      +  +     V L   LSQ ER  AL   + G  ++ +ATDVA
Sbjct: 248 QSVIVFTHTCKNCQVLVSMFHKLGLTCVGLHSLLSQGERLAALARFKSGTIKILVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+P +ELV+++ + ++P++ +HR GRT RAGR GM++ ++ Q    R +++  + N
Sbjct: 308 SRGLDIPQVELVVNSNIPADPKDYIHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKIN 367

Query: 365 VSVVWEPAPSVEA--------IRERDAQRILQDPLFLD 394
             +        E         +  R+A+  ++D   L+
Sbjct: 368 TKLTEYTTSEKEVLTLLKAVLVARREAELRVRDSDILE 405


>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
 gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
          Length = 551

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/360 (31%), Positives = 188/360 (52%), Gaps = 6/360 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FEN+   + +A+S++     T +Q+  +   L  +D++  A+TGSGKT  F       ++
Sbjct: 115 FENL---LLQAISKQNIDTPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSIPHIM 171

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P+AL +APTRELA Q+  E         +   V  GGVS  ++ ++L+ 
Sbjct: 172 -DQPYLEKGDGPIALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQCKELKA 230

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVV TPGRL D I+ K   ++ +  +VLDEAD+M D GF   +  I++     R+ L
Sbjct: 231 GCEIVVSTPGRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTL 290

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RY 241
           +FSAT    +   A++   D ++++I      +SDI     ++       + +       
Sbjct: 291 LFSATFKQNVEDFARSILTDPIKISIGQAGSANSDITQIVQVLKSESEKWSWLIDNLPNL 350

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + ++F S +ASV   +K L    F+  ++ G+ +Q ERS  +Q  ++G+  + IAT
Sbjct: 351 LNQGSVLIFVSMKASVEELSKNLTNFGFKTCSIHGDKNQYERSQTIQTFKEGKVNILIAT 410

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P ++ VI+ + S + E+  HR GRTGRAG KG +  +I       A  L +
Sbjct: 411 DVAARGLDIPLIKNVINFDPSRDIESHTHRIGRTGRAGAKGDAYTLITPKDVNFAADLVK 470


>gi|332641920|gb|AEE75441.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 407

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/362 (32%), Positives = 187/362 (51%), Gaps = 8/362 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L  RG+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L        
Sbjct: 46  LQENLL-RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS----- 99

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVG
Sbjct: 100 -LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVG 158

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ 
Sbjct: 159 TPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 218

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIV 249
           P    + + +    VR+ +  +      I      +     +   + ++        +++
Sbjct: 219 PEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 278

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID
Sbjct: 279 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 338

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R    + +  NV V  
Sbjct: 339 VQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEE 398

Query: 370 EP 371
            P
Sbjct: 399 LP 400


>gi|330447222|ref|ZP_08310872.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491413|dbj|GAA05369.1| ATP-dependent RNA helicase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 436

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 107/348 (30%), Positives = 174/348 (50%), Gaps = 3/348 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPLVLKGLEDKGFHNCTPIQALALPVMLSGHDIAGQAQTGTGKTIAFLTATFNHLLETA 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAILDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++GT GR+ D  + + + ++ ++ VVLDEAD M DLGF  DI F+    P     L  
Sbjct: 136 DILIGTCGRIIDFYKQRVIELNSIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVIVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    + 
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGASGHSISFACEE 363


>gi|281344701|gb|EFB20285.1| hypothetical protein PANDA_020280 [Ailuropoda melanoleuca]
          Length = 645

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 184/377 (48%), Gaps = 11/377 (2%)

Query: 3   IFEN----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE+     P++I E++   G+   T +Q       L+  D++  AQTG+GKT+++ +  
Sbjct: 241 LFEDAFHPYPELI-ESIKRAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPG 299

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +       + P  L + PTRELA+QV  E    Y+  G+      GG +  ++ 
Sbjct: 300 FIHLNNQPISREERNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSICIFGGRNREQQI 358

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RD+  G  I++ TPGRL        +N+  +  +VLDEAD+MLDLGF   I  IL     
Sbjct: 359 RDITKGIDIIIATPGRLNYLQMNNFVNLQSITYLVLDEADKMLDLGFEHQIMKILLDVRP 418

Query: 179 KRRMLMFSATI-SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ +M SAT             ++  +      +    + +    ++    ++ + +  
Sbjct: 419 DRQTVMISATWSDTIHQLGQSYLKEPMIVYVGTLDLVAVNTVTQNVIITTQEEKRSLLQE 478

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L+    ++  IVF   R      +  L+     V +L G+  Q +R  AL+  R G+ +
Sbjct: 479 FLQNRSPQDKVIVFVRRRLVADDLSSDLSIQGITVQSLHGDRDQHDRERALEDFRSGKVK 538

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
           V IATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G+S+ ++ QN  +  
Sbjct: 539 VLIATDLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGKTGLSITLMTQNDWKIA 598

Query: 355 -RAERLFREANVSVVWE 370
               ++ + AN SV  +
Sbjct: 599 TELIKILKRANQSVPED 615


>gi|45446743|ref|NP_031398.2| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|45446747|ref|NP_987095.1| ATP-dependent RNA helicase DDX42 [Homo sapiens]
 gi|74750541|sp|Q86XP3|DDX42_HUMAN RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42; AltName: Full=RNA helicase-like protein;
           Short=RHELP; AltName: Full=RNA helicase-related protein;
           Short=RNAHP; AltName: Full=SF3b DEAD box protein;
           AltName: Full=Splicing factor 3B-associated 125 kDa
           protein; Short=SF3b125
 gi|29420431|dbj|BAC66466.1| RNA helicase-related protein [Homo sapiens]
 gi|62205357|gb|AAH93081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Homo sapiens]
 gi|119614683|gb|EAW94277.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Homo
           sapiens]
 gi|168277556|dbj|BAG10756.1| ATP-dependent RNA helicase DDX42 [synthetic construct]
          Length = 938

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|119469633|ref|ZP_01612502.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
 gi|119446880|gb|EAW28151.1| ATP-dependent RNA helicase, specific for 23S rRNA [Alteromonadales
           bacterium TW-7]
          Length = 466

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/369 (35%), Positives = 205/369 (55%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 15  LPAGLVDNLSTLGYAHMTPVQAQSLPPVLEGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 75  FRI------QSLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P+ R+ L+F
Sbjct: 129 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIECIPQNRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK    +   + +  E  + +   Y   +     R   +  +L     +
Sbjct: 189 SATFPRAIEAIAKRVLSNPEMIKVEEEQEKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 249 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFANKSASILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ +P+  +HR GRTGRAG+KG++  +     Q +  ++      
Sbjct: 309 RGLDIDDMDMVINYHLAHDPQTHVHRVGRTGRAGKKGIACSIYGDAEQFKVAQIGDHYER 368

Query: 366 SVVWEPAPS 374
               EP PS
Sbjct: 369 DFEPEPMPS 377



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                       +  G KQK  A  ++  L    GI  + +G I V  ++ FV V  +  
Sbjct: 383 KPPYKPEMVTLMIDSGKKQKVRAGDILGALTGKDGIAGRQVGKINVLDNVAFVAVERNAS 442

Query: 519 -DLLRRTVKLD-KGIQLK 534
              LR+  + + KG +++
Sbjct: 443 KPALRKLTEGNIKGRKIR 460


>gi|312963192|ref|ZP_07777677.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
 gi|311282703|gb|EFQ61299.1| ATP-dependent RNA helicase [Pseudomonas fluorescens WH6]
          Length = 444

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 178/361 (49%), Gaps = 1/361 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQLLTLEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +  SA  AL + PTRELA QV   +        +      GGVS++ +   L+ G  I+
Sbjct: 70  VAANSA-RALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMMKLRKGVDIL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   L ++ L+ +VLDEAD MLDLGF +++  I    PKKR+ L+FSAT
Sbjct: 129 VATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S  I  LA     D + + ++  N   + +    V V    +    V+++R    K  +
Sbjct: 189 FSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKAELFVHLMRKGRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V      L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEMLTRQTLT 368

Query: 369 W 369
            
Sbjct: 369 R 369


>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
           [Paracoccidioides brasiliensis Pb03]
          Length = 1203

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 107/421 (25%), Positives = 195/421 (46%), Gaps = 26/421 (6%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 590 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 648

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 649 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 708

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 709 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFSAT 768

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
               +  LA+      V + +   +    +I     +     +          +     +
Sbjct: 769 FPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLGDLYADDNN 828

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F   + +     + L    +  +++ G   Q +R + +   + G   + IAT 
Sbjct: 829 EDARTLIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQVDRDSTIADFKAGVFPILIATS 888

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + + 
Sbjct: 889 VAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEVQERYSVDISKA 948

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIA 417
              S   +P P  EA+++           F++ ++  ++K          L + D E+ A
Sbjct: 949 LKQS--GQPVP--EAVQKM-------VNSFIEKVKAGKEKASGSGFGGKGLERLDQERDA 997

Query: 418 A 418
           A
Sbjct: 998 A 998


>gi|152977726|ref|YP_001343355.1| ATP-dependent RNA helicase RhlB [Actinobacillus succinogenes 130Z]
 gi|189040023|sp|A6VKC3|RHLB_ACTSZ RecName: Full=ATP-dependent RNA helicase rhlB
 gi|150839449|gb|ABR73420.1| DEAD/DEAH box helicase domain protein [Actinobacillus succinogenes
           130Z]
          Length = 413

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 189/369 (51%), Gaps = 5/369 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    I  AL+++ +   T +Q   L   L+ KDV   AQTG+GKT+AF  A    
Sbjct: 11  FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHH 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F   + P AL +APTRELAVQ+  + E L   T + +A+  GG    ++ + +
Sbjct: 71  LLTHQPDF-ITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTI 129

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF--ILDSSPKK 179
           +NG  I++GT GR+ D+++   +  + ++ VVLDEAD M DLGF  DI +      +PK 
Sbjct: 130 ENGVDILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFDLGFIKDIRYLLRKCPAPKS 189

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R  ++FSAT+S  +  LA     D   + I    +    I       +  D+   ++ +L
Sbjct: 190 RLTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELFYPSNRDKMALLMTLL 249

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  I+F +T+         LA    +V  L+G+++Q++R   L+   DG   + +
Sbjct: 250 EEEWPERCIIFANTKHRCEEIWGYLAADGQRVGLLTGDVAQKKRLALLKQFTDGELDILV 309

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ +PD+  V + +L  + E+ +HR GRTGRAG  GMS+    +        +
Sbjct: 310 ATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGMSISFACEQYAMNLPAI 369

Query: 360 FREANVSVV 368
                  + 
Sbjct: 370 EEYIGHHIP 378


>gi|224064557|ref|XP_002301515.1| predicted protein [Populus trichocarpa]
 gi|222843241|gb|EEE80788.1| predicted protein [Populus trichocarpa]
          Length = 807

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 122/364 (33%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      +  A++++GY   T +Q   L   L   D++  A+TGSGKT AF L +
Sbjct: 224 IKTFEDCGFSPQLMNAIAKQGYEKPTPIQCQALPIVLSGSDIIGMAKTGSGKTAAFVLPM 283

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S   + 
Sbjct: 284 IVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLETKKFSKSHGIRVSAVYGGMSKLDQF 342

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IV+ TPGRL D ++ K LN+S    +VLDEAD M DLGF   I  I+     
Sbjct: 343 KELKAGCEIVIATPGRLIDMLKMKALNMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 402

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  LA+    D VRV +    R + DI     ++         +  
Sbjct: 403 DRQTLLFSATMPRKIEKLAREILTDPVRVTVGEVGRANEDITQVVQVIPSDAEKLPWLIE 462

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF S +A+V      LA+  F+V AL G+  Q  R   LQ  + G   
Sbjct: 463 KLPGMIDEGDVLVFASKKATVDDIESQLAQKAFKVAALHGDKDQASRMEILQKFKSGVYH 522

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G++  +I Q   R 
Sbjct: 523 VLVATDVAARGLDIKSIKSVVNFDIAREMDVHVHRIGRTGRAGDKDGIAYTLITQKEARF 582

Query: 356 AERL 359
           A  L
Sbjct: 583 AGEL 586


>gi|114153757|sp|Q9LYJ9|RH46_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 46
 gi|332004672|gb|AED92055.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 645

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 178/375 (47%), Gaps = 9/375 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P  +   +   G+   + +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 162 SFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 221

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +         P  L ++PTRELA Q+  E       + +  A   GG     + ++
Sbjct: 222 HL--QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKE 279

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  IVV TPGRL D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR
Sbjct: 280 IERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR 339

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     ++A  ++ + +  I
Sbjct: 340 QTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQI 399

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + I+   +   +           F   A+ G+ SQ ER + L   R GR  V 
Sbjct: 400 LRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVL 459

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++         + A  
Sbjct: 460 VATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASD 519

Query: 359 LFRE---ANVSVVWE 370
           L +    AN  V  +
Sbjct: 520 LIKILEGANQKVPPQ 534


>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
          Length = 696

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 144 IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 203

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 204 IVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 262

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 263 KELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 322

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 323 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLE 382

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   
Sbjct: 383 KLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 442

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 443 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRF 502

Query: 356 AERL---FREANVSVVWE 370
           A  L      A   V  E
Sbjct: 503 AGELVHCLIAAGQDVPNE 520


>gi|239918016|ref|YP_002957574.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
 gi|239839223|gb|ACS31020.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 611

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 146/507 (28%), Positives = 227/507 (44%), Gaps = 30/507 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +      I EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  QTFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAENDR-------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              +   +           A AP AL +APTRELAVQV  +L    A+  + +A   GG 
Sbjct: 97  QRAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +   +  +LQ G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +
Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALS 229
           L + P  R+ ++FSAT+   +  +A+ Y      +  A          DI          
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+D  +   L+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+ 
Sbjct: 277 DKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRA 336

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+  + +ATDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++ 
Sbjct: 337 FRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVD 396

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEA---------IRERDAQRILQDPLFLDSIQGD- 399
                R   + +   +    EP  +  +         I +    R+ Q    L+ ++G+ 
Sbjct: 397 WEDMPRWSLIDKALGLG-QPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLEGET 455

Query: 400 -------EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRA 452
                  E K  D    +      +    R  R G              G  R     R+
Sbjct: 456 LEDLGGPEAKQRDGGRGRGREGGRSRDGERGGREGGRGRRSGEGRDAARGGGRGERSERS 515

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            +  G +    +  +       ++Q+A
Sbjct: 516 GRGRGEAPAEQRAGARSRGEAPAEQRA 542


>gi|253574214|ref|ZP_04851556.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846691|gb|EES74697.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 375

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 128/374 (34%), Positives = 194/374 (51%), Gaps = 10/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+  ++   L  +G VN T VQ A +      +D +V AQTG+GKT+AF L +
Sbjct: 2   LTTFESLNVSPLLVRKLQGQGIVNPTPVQAAAIPVLQSGEDAIVQAQTGTGKTLAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRE 117
              +  E           AL I PTRELA+Q+  E   L  A  G+ V    GG  V R+
Sbjct: 62  LEKIRPERPEA------QALIITPTRELAIQITAEARKLAEAMEGLSVLAAYGGQDVERQ 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+NGA +V+GTPGRL DH+R   L +  ++ +VLDEAD+ML +GF  ++E IL   P
Sbjct: 116 LRKLKNGAQLVIGTPGRLLDHLRRGSLTLGAVRYLVLDEADQMLHMGFLAEVEEILSLVP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236
           + R+ ++FSAT+   +  LAK Y      + IA  +R     I    V      + +A++
Sbjct: 176 RSRQTMLFSATMPGNVKRLAKTYMDKPRDIQIAETSRVTLDSIRQILVECTDRTKQSALI 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +R      A++FC T+   S   + L    FQ   L G+LSQ +R   ++  R  +  
Sbjct: 236 ESIRSQRPYLAVIFCRTKRRASTLNEALQAAGFQSDELHGDLSQAKREQVMRAFRSAKLE 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARGID+  +  V + ++  + ++ +HR GRTGRAG KG++V           
Sbjct: 296 LLVATDVAARGIDVEGVTHVFNYDIPHDVDSYIHRIGRTGRAGEKGVAVTFAAPKDMEAL 355

Query: 357 ERLFREANVSVVWE 370
             + R     +  +
Sbjct: 356 RLIERGIGRKLERQ 369


>gi|156935889|ref|YP_001439805.1| ATP-dependent RNA helicase RhlB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|189040029|sp|A7MQI2|RHLB_ENTS8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|156534143|gb|ABU78969.1| hypothetical protein ESA_03777 [Cronobacter sakazakii ATCC BAA-894]
          Length = 421

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 188/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ +AL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPVVVQALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +   + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAATERLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|114669826|ref|XP_001147663.1| PREDICTED: DEAD box polypeptide 42 protein isoform 5 [Pan
           troglodytes]
 gi|114669828|ref|XP_001147738.1| PREDICTED: DEAD box polypeptide 42 protein isoform 6 [Pan
           troglodytes]
 gi|114669830|ref|XP_001147818.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 7 [Pan
           troglodytes]
 gi|114669832|ref|XP_001147880.1| PREDICTED: ATP-dependent RNA helicase DDX42 isoform 8 [Pan
           troglodytes]
          Length = 938

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|17552642|ref|NP_497743.1| hypothetical protein C46F11.4 [Caenorhabditis elegans]
 gi|3874996|emb|CAB03765.1| C. elegans protein C46F11.4, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 811

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 173/373 (46%), Gaps = 3/373 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+       ++ +
Sbjct: 271 SFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ 330

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNG 124
            D       P+A+ + PTRELA+QV +E +       +       GG    +       G
Sbjct: 331 PD-LKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQNEG 389

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGR+ D ++    N      +V DEAD M D+GF   ++ I D     R+ LM
Sbjct: 390 AEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLM 449

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
           FSAT    +  LA++   D VR+        ++DI+ +  ++   D + + ++  L    
Sbjct: 450 FSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFA 509

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   ++   T+   S       +     + L      Q   N   +    ++++ +ATDV
Sbjct: 510 SLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKSQILVATDV 569

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ ++  VI+ +++ + +  +HR GRTGRAG KG +  ++ +        L +  
Sbjct: 570 AARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGHLVKNL 629

Query: 364 NVSVVWEPAPSVE 376
                  P P ++
Sbjct: 630 ESVSQEVPKPLMD 642


>gi|94400887|ref|NP_001035345.1| ATP-dependent RNA helicase vasa [Apis mellifera]
 gi|83701804|gb|ABC41341.1| vasa protein [Apis mellifera]
          Length = 630

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 17/385 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   +  ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT AF + +
Sbjct: 195 IESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPI 254

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  GG SV 
Sbjct: 255 INTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVM 314

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   IE ++D 
Sbjct: 315 HQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDH 374

Query: 176 SPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  +R+ LMFSAT    +  LA+ +  + + + +       SD++     VA + +
Sbjct: 375 ETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKK 434

Query: 232 DNAIVNILRYHGAKNAI----VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            + +  IL        +    VF   +         L+E+ +   ++ G+  Q++R  AL
Sbjct: 435 KDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEAL 494

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +   
Sbjct: 495 ADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSF 554

Query: 348 IPQNM----QRRAERLFREANVSVV 368
                    +    R+ ++AN SV 
Sbjct: 555 FDPEEDAPLRGDLVRILKQANQSVP 579


>gi|302854756|ref|XP_002958883.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
 gi|300255785|gb|EFJ40071.1| eukaryotic initiation factor [Volvox carteri f. nagariensis]
          Length = 400

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/380 (27%), Positives = 193/380 (50%), Gaps = 9/380 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F++  + + +   L   G+   +++Q+  + P ++ +DV+  AQ+G+GK+    ++  
Sbjct: 27  NTFDSMGLKEELLRGLYAYGFEKPSAIQQRAVLPIVQGRDVIAQAQSGTGKSSMISVSTC 86

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +               L ++PTRELA Q  + +  +     +    CIGG S+  + R
Sbjct: 87  QLVDVT------LRECQVLILSPTRELAQQTEKVILAVGDFMNIQAHACIGGKSLGEDIR 140

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G H+V GTPGR+ D I+ + L   H+K ++LDEADEML   F+D I  I    P +
Sbjct: 141 KLDSGVHVVSGTPGRVFDMIQRRNLRTRHIKTLILDEADEMLAKNFKDQIYDIYRYLPPE 200

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  D +RV +  +      I    V +     + + + ++
Sbjct: 201 TQVVLVSATLPAEVLEMTNKFMTDPIRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 260

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A++FC+T+  V   T+ + ++ F V ++ G++ Q+ER   +   R G ARV 
Sbjct: 261 YDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVASMHGDMVQKEREAIMGEFRSGAARVL 320

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARG+D+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    
Sbjct: 321 ITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVRNDDIRILRD 380

Query: 359 LFREANVSVVWEPAPSVEAI 378
           + +  +  +   P    E I
Sbjct: 381 IEQYYSTQIDEMPMNVAELI 400


>gi|302414752|ref|XP_003005208.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
 gi|261356277|gb|EEY18705.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
           albo-atrum VaMs.102]
          Length = 1145

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 120/445 (26%), Positives = 206/445 (46%), Gaps = 17/445 (3%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L++ GY   TS+Q   L   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 531 LDILADLGYERPTSIQMQALPCLMSGRDVIGVAKTGSGKTMAFLLPMFRHIKDQKP-IRG 589

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELAVQ+ R+ +      G+      GG  +  +  DL+ GA IVV T
Sbjct: 590 DDGPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADLKRGAEIVVCT 649

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D     +G+  N+  +  VVLDEAD M D+GF   +  I  +    R+ ++FSAT
Sbjct: 650 PGRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSAT 709

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--- 245
           +   I +L K   K  V V +   +    +I  +  ++   D+   ++ +L     +   
Sbjct: 710 MPRIIDSLTKKVLKSPVEVTVGGRSVVAPEITQKVEVLDEGDKFFHLLGLLGELYEEDED 769

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +++F   +       K L    +  +++ G   Q +R + +   + G   + IAT VA
Sbjct: 770 ARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQVDRDSTISDFKKGIVPILIATSVA 829

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG KG +V  I    +  A  + +   
Sbjct: 830 ARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNKGTAVTYITSEQENCAPGIAKALE 889

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF--LR 422
            S    P   +  +R+    ++            D        L + D E+ AA     +
Sbjct: 890 QSGQPVP-ERLNEMRKAHRDKVKAGKA------KDTSGFGGKGLDRLDAEREAARLRERK 942

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFR 447
            H+A     +E      V  ++  +
Sbjct: 943 THKAEGDDDDEKEEKPAVKEKEEEK 967


>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 458

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 182/374 (48%), Gaps = 5/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + ++L   G    T +QE  +   L  KD++ S++TGSGKT+AF L     L+  +
Sbjct: 18  LDQRLLQSLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAMQRLI--S 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  + + PTRELA QV  +L  L A T       +GG + + + + L    H
Sbjct: 76  CKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALARDPH 135

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR---ML 183
            VV TPGRL DH++   L+++ L+ ++LDEAD MLDLGF + ++ I +++  KRR   M 
Sbjct: 136 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKLINNAADHKRRQTLMF 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +           +  +        AS            +   L  ++  +  IL+   
Sbjct: 196 SATLDHGDVNDIANELLKFPEHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R    LA   F+  +LSGEL Q  R+  +     G  ++ + TDV
Sbjct: 256 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++         ++    
Sbjct: 316 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFTQVQTFL 375

Query: 364 NVSVVWEPAPSVEA 377
           N +  +     ++A
Sbjct: 376 NKTFNFSELEGLKA 389


>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
 gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
          Length = 553

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/478 (23%), Positives = 203/478 (42%), Gaps = 23/478 (4%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             +   T VQE  +   L+  DVL  AQTG+GKT A+ L + S L    D   P SA   
Sbjct: 1   MRFDECTPVQEKCIPEILKGHDVLGVAQTGTGKTAAYLLPVLSKL---ADGGYPESAINC 57

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGTPG 133
           + ++PTRELA Q+ + ++        V  V + G +               A +V+ TPG
Sbjct: 58  VIMSPTRELAQQIDQGMQGFAYYLNGVSCVAVYGGNDGNRYDQELKSLALGADVVIATPG 117

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R   HI    +++S +   +LDEAD MLD+GF DDI  I    P   + +MFSAT+   I
Sbjct: 118 RFISHISLGNVDLSKVSFFILDEADRMLDMGFSDDIMTIAKKLPATCQTIMFSATMPAKI 177

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LAK   K+ V +   + ++    I   A +   + +   I +I +    K  I+F  +
Sbjct: 178 EELAKTLLKNPVEI-KLAVSKPAEKIQQTAYVCYETQKMGIIKDIFKAGDLKRVIIFSGS 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V +    L         +  +L Q++R++ +   + G+  V +ATD+ +RGID+ D+
Sbjct: 237 KQKVKQIAGSLNRMHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDI 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ ++  + E+ +HR GRT RA R G ++  + ++     +++       V     P
Sbjct: 297 AMVINYDVPHDAEDYVHRIGRTARADRDGKAITFVNEDDIYFFQQIESFLEKEVEKAQLP 356

Query: 374 SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEE 433
           +   + E    +    P    +     ++      +  D ++         R    AP+ 
Sbjct: 357 A--ELGEGPEYKSNGKPKKAGNSAKSRRRKDRDHQSHKDKKQ----GNNKQRNRRPAPQT 410

Query: 434 ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF---------SLSVGSKQKAEAR 482
                  +   + R            + +   ++             + G +Q+ + +
Sbjct: 411 QNNTDENNANQQERKAGNKQNHRPQKQQDNNPAATEGKPVNKKNNRQNKGKQQECQPK 468


>gi|198429557|ref|XP_002122407.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 2 [Ciona intestinalis]
          Length = 575

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 115/417 (27%), Positives = 205/417 (49%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +  +A+ + G+ ++  +Q   + P L  +D+L +A+TGSGKT+AF +      L   
Sbjct: 97  VSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIPAIE--LMYK 154

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTRELA+Q+   L+ L         + +GG +   E + L NG +
Sbjct: 155 LRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAKKLGNGIN 214

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH    +     +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 215 IIVATPGRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPKRRQTMLF 274

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  LA+   K         ++ Q + +D       +     R   +   LR +
Sbjct: 275 SATQTKKIEDLARVSLKKMPLYVGVDDSEQSATVDGLEQGYAVCPSEKRFLVLFTFLRRN 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L       +++ G   Q +R+       +    + + TD
Sbjct: 335 RDKKVMVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADKGILLCTD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++  +  +       L 
Sbjct: 395 VAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGR-GHALLFLRPSELGFLHYL- 452

Query: 361 REANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           R A V V  +E + S  A  +   +R++Q   FL     +  K      A H  + I
Sbjct: 453 RHAKVPVSEFEFSWSKIANIQTQLERLIQKNYFLHKSSQEAYKSYIRAYASHSLKSI 509


>gi|26340024|dbj|BAC33675.1| unnamed protein product [Mus musculus]
          Length = 810

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 141 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 201 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 259

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 260 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 319

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 320 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 379

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 380 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 439

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 440 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 496


>gi|74152734|dbj|BAE42635.1| unnamed protein product [Mus musculus]
          Length = 929

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 171/357 (47%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q E +  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSEGNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|238789356|ref|ZP_04633142.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
 gi|238722499|gb|EEQ14153.1| ATP-dependent RNA helicase rhlB [Yersinia frederiksenii ATCC 33641]
          Length = 428

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|119775538|ref|YP_928278.1| DEAD-box ATP dependent DNA helicase [Shewanella amazonensis SB2B]
 gi|119768038|gb|ABM00609.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
           SB2B]
          Length = 407

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 190/379 (50%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++ G+V  T VQ   +   L   D++V A TG+GKT AF L + + LLA+ 
Sbjct: 8   LPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPILARLLADE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  AP AL + PTREL  QV    + L   + V +A   GGV +  +   ++ G  
Sbjct: 68  VASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLNAIKGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH++ + L I  +  +V DEAD MLD+GF D+I  ++    K R+  +FS
Sbjct: 128 LMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKTRQTALFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  LAK+       + IA+       I+ +   +    +   I ++L  +    
Sbjct: 188 ATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLLGKNSWSQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    + T  L E     VA+  +LSQ++R   L   +   ARV +ATDVAAR
Sbjct: 248 VLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  +I+ EL    E+ +HR GRTGRAG  G+++ ++    +     L    +  
Sbjct: 308 GLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLLVALEHYLDRR 367

Query: 367 VVWEPAPSVEAIRERDAQR 385
           +  +  P  E       +R
Sbjct: 368 LPQQWYPGFEPDLSIRHER 386


>gi|331655464|ref|ZP_08356457.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
 gi|331046785|gb|EGI18869.1| ATP-dependent RNA helicase RhlB [Escherichia coli M718]
          Length = 421

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTCGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|153840451|ref|ZP_01993118.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
 gi|149745886|gb|EDM57016.1| cold-shock deAd box protein a [Vibrio parahaemolyticus AQ3810]
          Length = 473

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 163/370 (44%), Gaps = 11/370 (2%)

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ P +  + + + +D V V++A +N     +  +  +V   ++D A+  +L     
Sbjct: 16  FSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEET 75

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR    R    L+   F+  AL G++ Q  R   +  ++ G   + +ATDV 
Sbjct: 76  DASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVV 135

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V + ++  + E+ +HR GRTGRAGRKG ++ ++  N  R    + R   
Sbjct: 136 ARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTIERVTK 195

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA-----KHDPEKIAAG 419
            S+     P  + + E    ++  + L  +       K  +++       + DP  +AA 
Sbjct: 196 SSMEEIQLPLRDQVAEARLNKLAAE-LEAEKEHKALDKFAELVEKLQTSLEIDPAMLAAM 254

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW--FSLSVGSKQ 477
            L+  +             + +     +      + G     +F    W  + L VG +Q
Sbjct: 255 LLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQVGREQ 314

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK-GIQLKYL 536
             + + ++  L    G+ + SIGAI++    TFV++            KL K  I+ + +
Sbjct: 315 GVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTS--EAASKLSKLRIRQQDV 372

Query: 537 GGEKPDFRGY 546
           G    DF  +
Sbjct: 373 GAVVCDFDDF 382


>gi|114561793|ref|YP_749306.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333086|gb|ABI70468.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 421

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 188/373 (50%), Gaps = 8/373 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++   L+E  Y   T +Q   +   L  KDV+  AQTG+GKT AF L L   LL  
Sbjct: 7   SLHPILINRLAELKYQQPTPIQLQAIPVILSGKDVMAGAQTGTGKTAAFALPLLHQLLTH 66

Query: 66  NDRFS--------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            D  +         ++   AL + PTRELA QV   +E     + V   +  GGVS+  +
Sbjct: 67  QDNLAAQPDTQHINSTPITALVLVPTRELAQQVHSSIEQYAYGSSVTSVMVYGGVSIGEQ 126

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L NG HI+V TPGRL D +R + L++S L  +V DEAD MLD+GF+D+I  +L   P
Sbjct: 127 IRQLANGTHILVATPGRLLDLLRKRALSLSQLTHLVFDEADRMLDMGFKDEIVEVLKRLP 186

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT+   + + ++   +    + +A  N   S I  R   V  + +   + +
Sbjct: 187 STRQTLLFSATLDDRMLSFSRRLLRSPQVIEVAQRNTTASSIVERVFNVDANRKCAMLCH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       +++F  T+       K + +      A   +LSQ  R   L   + G    
Sbjct: 247 LITQESWLQSLIFSRTKQGADALVKQMKQAGVAAEAFHADLSQAVREQVLAAFKAGEVTA 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ +L  V++ EL    E+ +HR GRTGRAG+ G ++ ++  + +    
Sbjct: 307 LVATDVAARGLDINELNYVVNMELPFQVEDYVHRIGRTGRAGKAGQAITLLSIDDEPLLT 366

Query: 358 RLFREANVSVVWE 370
           +L    +  +  +
Sbjct: 367 KLEAFLDRRLPQQ 379


>gi|330446057|ref|ZP_08309709.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490248|dbj|GAA04206.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 426

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 201/392 (51%), Gaps = 19/392 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF------ 54
            FE  N+   + +AL E GY + T VQ+  +   L+ +DV+  AQTG+GKT AF      
Sbjct: 2   SFESLNLHPNLLKALVELGYSSPTDVQKQAIPLALKGEDVMAGAQTGTGKTAAFSLPLLQ 61

Query: 55  ---GLALASTLLAENDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
               L   S   AE+   S AS     AL + PTRELA QV   +      T + VAV  
Sbjct: 62  RLLTLPSQSEQSAESSTDSKASGHPIRALILTPTRELAQQVFDSMSAYAKYTDLKVAVAY 121

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG S++ + + +  GA I+V TPGRL DH+  + ++++ ++  VLDEAD MLD+GF  DI
Sbjct: 122 GGTSMNVQVKAINAGADILVATPGRLLDHVFNRSVSLTEIETFVLDEADRMLDMGFIVDI 181

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + I+   P +R+ L FSAT S  +  LA +   +   V +   N     ++     V   
Sbjct: 182 QRIMKRMPDERQTLFFSATFSKQVKKLAFDILTEPKMVEVTPANTAAETVEQMVYPVDKH 241

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   +  ++     +  +VF  T+    +  K L     + V+++G+ SQ  R  AL  
Sbjct: 242 RKAELLAYLIGSRNWQQVLVFTKTKQGSDKLAKDLGLDGIKAVSINGDKSQGARQRALDE 301

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G+ RV +ATDVAARG+D+  L  V++ ++    E+ +HR GRTGRAG  G ++ ++ 
Sbjct: 302 FKSGKVRVLVATDVAARGLDIEQLGYVVNFDMPYKAEDYVHRIGRTGRAGMTGHAITLMS 361

Query: 350 QNMQRRAERLFREANVSVV------WEPAPSV 375
            + +   + +    +  +       +EP P++
Sbjct: 362 LDEEWALKAIEELLDTRIPQQWLEGYEPDPTL 393


>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 786

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 192/389 (49%), Gaps = 15/389 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P VI +   +  +   T +Q          +D++  A+TGSGKT++FGL + + +L++ 
Sbjct: 376 FPSVIMKVTEK--FTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPILAQILSKQ 433

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  S     PL L +APTRELA+Q     E   A  G+      GG       + L+ G 
Sbjct: 434 NSTSGGKRTPLMLVLAPTRELAMQTADVCEAAGATCGLKTLCVYGGSPREGNVKALKAGV 493

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D ++     +  ++ +VLDEAD MLD+GF   I  I+ + PK R+ LMF
Sbjct: 494 DLLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRMLDMGFEPAIRQIIAAVPKTRQTLMF 553

Query: 186 SATISPAITTLAKNYQKDA------VRVNIASENRQHSDIDYRAVLVALSDRDNAI---V 236
           SAT   +I +LA  + ++       V+   +     +  +     ++   D+++ +   +
Sbjct: 554 SATWPLSIQSLANEFLREPAKVTIGVKQEQSDGPTANRRVTQIVEVMTYRDKEHRLQDLL 613

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L        +VF   +    R  + L    ++V  + G+ SQ  RS A++  R G   
Sbjct: 614 HKLHKSRKNRILVFALYKKEAERIEQTLRRKGWKVQGIHGDKSQALRSKAIESFRSGEEP 673

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+PD+E VI+       E+ +HR GRTGRAG+ G +        +  A
Sbjct: 674 LLVATDVAARGLDIPDVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAYTFFTDEDKTHA 733

Query: 357 ERL---FREANVSVVWEPAPSVEAIRERD 382
             L    REAN  +  +       +++++
Sbjct: 734 GELQQVLREANQDIPQDLMSYGAHVKKKE 762


>gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 383

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 200/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + ++L   +   +V +  G     ++++
Sbjct: 65  LLNNPVKEQRFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|148702332|gb|EDL34279.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Mus
           musculus]
          Length = 927

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 258 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 317

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 318 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 376

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 377 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 436

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 437 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 496

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 497 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 556

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 557 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 613


>gi|313234298|emb|CBY10365.1| unnamed protein product [Oikopleura dioica]
          Length = 408

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 190/399 (47%), Gaps = 9/399 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           IP+ I + +S+ GY + T +Q   +   ++ +D++  A+TGSGKT+AF + L   +  L 
Sbjct: 9   IPENILKIISDAGYKDPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLVPLLVWIDSLP 68

Query: 65  ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            N R   A   P A+ +APTRELA Q+  E+    +  G+     IGG S   +   L+ 
Sbjct: 69  RNIRVEDADKGPYAMILAPTRELATQIEEEVVKFGSPLGIRSVAVIGGASREEQGLKLRM 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D I  + L +S    +VLDEAD M+D+GF  +++ IL   P ++ ++
Sbjct: 129 GCEIVIATPGRLIDVIENRYLVLSQCTYIVLDEADRMIDMGFEPEVQKILSHMPFRQTVM 188

Query: 184 MFSATISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +    P         ++        +     +     +       + +  +I+     
Sbjct: 189 FTATMPPPVERIAKTFMRRPCTVYIGSVGKAADRIVQKAFFVPDGQKAKKMISILEDENC 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF + +       + L ++ +  ++L G   Q +R  AL  +++G   V +AT
Sbjct: 249 LEQGPVIVFVNQKKGCDVLARQLEKYGYDAISLHGGKGQDQRDYALACIKNGEKNVLVAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGID+ D+ L+++ +++ N E+  HR GRTGRAG+ G +V  + Q+       L +
Sbjct: 309 DVAGRGIDIKDVSLILNYDMAKNIEDYTHRIGRTGRAGKSGKAVTFLTQDDSHNFYDLRQ 368

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
               S      P ++    R  +   +    +   + DE
Sbjct: 369 MLIESECSSCPPELD----RHPEAQQKPGTIMQKKRKDE 403


>gi|253575601|ref|ZP_04852937.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844939|gb|EES72951.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 472

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 193/375 (51%), Gaps = 6/375 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL + G    + VQ   +   L  +D+L  +QTG+GKT+A+ L L   +      
Sbjct: 13  EQLTAALLDYGISEPSPVQAECIPAALEGRDILAQSQTGTGKTLAYLLPLLQRINPGE-- 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L +APT+ELA+Q+ RE E      G+     IGG ++ R+   L+    +V
Sbjct: 71  ----KTLQGLILAPTQELAMQILREAEKYGEPLGIRSQALIGGAAIKRQLEKLKLHPQLV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ + +  + L +  L  VV+DE D+M  LG   D+E IL  + + R+++  SAT
Sbjct: 127 VGTPGRIREILALRKLKLHTLLTVVVDEVDQMFQLGGTADVEHILRGTLRDRQLMFLSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           I+P I  LA    K+ + + I  E R    +++   +    D+ + +  I+R+   +  I
Sbjct: 187 INPDIRALAAKEMKEPLEIGIEPEQRTSKTVEHLYFVSEARDKIDMLRRIVRHFEPERTI 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +    ++     +        AL G+  +  RS  LQ  R+G+ RV +A+DVAARG+
Sbjct: 247 VFINNTDQIAEVEAKMNYVGLSAGALYGDADKTARSLTLQRFREGKIRVLVASDVAARGL 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ +L LV++ +   + E+ +HR GRTGR GRKG++V ++    +    +  RE  + + 
Sbjct: 307 DIENLALVVNLDPPIDSEHYVHRVGRTGRMGRKGLAVSIVTPQEEFIMRKFARELGIEIE 366

Query: 369 WEPAPSVEAIRERDA 383
            +   S + +   +A
Sbjct: 367 PKALYSGKLVDAGEA 381


>gi|240281206|gb|EER44709.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H143]
 gi|325092298|gb|EGC45608.1| ATP-dependent RNA helicase DED1 [Ajellomyces capsulatus H88]
          Length = 694

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 184/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 202 ITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 261

Query: 59  A-STLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
              +L         A          P AL + PTREL  Q+  E      +T +   V  
Sbjct: 262 LSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 321

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    ++++H++ +VLDEAD MLD+GF   I
Sbjct: 322 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQI 381

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAV 224
             I+  S    + +  +   S       +   ++ ++ +I        +   +       
Sbjct: 382 RRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVE 441

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             +  D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 442 CESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 501

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 502 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIS 561

Query: 345 VFVIPQN----MQRRAERLFREANVSVV 368
                ++    + R    L ++AN  V 
Sbjct: 562 TAFFSRSKNFKIARSLVDLLKDANQEVP 589


>gi|225020696|ref|ZP_03709888.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679783|ref|ZP_07402593.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
 gi|224946642|gb|EEG27851.1| hypothetical protein CORMATOL_00703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660403|gb|EFM49900.1| putative DEAD-box ATP-dependent RNA helicase CshA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 470

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 186/366 (50%), Gaps = 3/366 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I  AL+++G ++  ++QE  L   L  +D++  A+TG GKT  FG+ L   +    D  
Sbjct: 20  EITNALAQQGIIHTFAIQEQTLPIALDGRDIIGQARTGMGKTYGFGIPLLDRVFDAADIA 79

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA+QV  +L      T + V    GG  +  +R  L +G  +VV
Sbjct: 80  ELDGTPRALVVTPTRELAIQVSTDLTKAAMFTPIRVTTVYGGRPIDEQRAVLDDGVDVVV 139

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  +   L + H+  +VLDEADEMLDLGF  D+E +L +   + + ++FSAT+
Sbjct: 140 GTPGRLLDLHKRGILRLDHVAILVLDEADEMLDLGFFPDVEKLLAALTHRHQTMLFSATM 199

Query: 190 SPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              + T      +Q   +R       + H+  +         D+      IL+ +     
Sbjct: 200 PGPVLTLAREFLHQPVHIRAENVDAPQTHTTTNQVVFQSHHLDKKATCAKILQANNRGKT 259

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ S +     LA+  F V A+ G+L Q  R  +L   R  R  + +ATDVAARG
Sbjct: 260 IIFARTKRSAADLATDLAKRGFSVGAVHGDLGQAARETSLNAFRANRVDILVATDVAARG 319

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++  +  ++   +  E  +  
Sbjct: 320 IDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGHSGTAVTLVGYDELQKWRIINDELQLD- 378

Query: 368 VWEPAP 373
             EP P
Sbjct: 379 NPEPPP 384


>gi|296272832|ref|YP_003655463.1| DEAD/DEAH box helicase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296097006|gb|ADG92956.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
           7299]
          Length = 452

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 123/381 (32%), Positives = 203/381 (53%), Gaps = 13/381 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + + E L   GY  LT +QE  L   L  KDV+  A+TGSGKT AFG+ L + L  +
Sbjct: 8   NIDEKLKENLISLGYETLTKIQEESLPLILEGKDVIAKAKTGSGKTAAFGIGLLNKLDVK 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             +         L + PTRELA QV  EL  +      + +    GGV   R+   L +G
Sbjct: 68  KFK------TQCLVLCPTRELADQVAVELRRIARYKHNIKILTLCGGVPSSRQTHSLTHG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+  H+R + LN   +  +VLDEAD MLD+GF +DIE ++   PK+R+ L+
Sbjct: 122 AHVIVGTPGRVLFHLREQNLNPESIDTLVLDEADRMLDMGFLEDIEKVISFIPKQRQTLL 181

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  L+K    D +     S +  H++   R   +  S +D+ ++ +   +  
Sbjct: 182 FSATYDENIKELSKGILVDPIFK---SVDTVHTESTIREEFIKTSRKDSVLLKLFSTYKP 238

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+FC+T+         L +  +  + L  +  Q+ R   + +  +    + IATDVA
Sbjct: 239 SSVIIFCNTKIKCDELDTYLYDMGYDPLVLHSDFEQKTRDEIITLFSNKSYPILIATDVA 298

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+ D+E+VI+ +++++     HR GRT RAG+ G+++ +     + + E L  + N
Sbjct: 299 SRGLDIDDVEMVINYDMANDTNVYTHRIGRTARAGKSGVALTLYNDYDEDKVEEL--QVN 356

Query: 365 VSVVWEPAPS-VEAIRERDAQ 384
             +V+    S ++ + +  A+
Sbjct: 357 KELVYVDEESLIDEVYKLTAE 377



 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +S G K K     ++  L + +G+ +  IG I++ P  ++V +    VD   + +K  + 
Sbjct: 383 ISGGKKLKLRPADILGCLIQDNGLEKDDIGKIKILPMCSYVAI---KVDAYEKKIKGQES 439

Query: 531 IQLK 534
           +++K
Sbjct: 440 LKIK 443


>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
          Length = 397

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|224368898|ref|YP_002603060.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
 gi|223691615|gb|ACN14898.1| RhlE1 [Desulfobacterium autotrophicum HRM2]
          Length = 427

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 185/372 (49%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A++ +GY   + +Q   +   L+ +DV+ +AQTG+GKT+ F L +   L    
Sbjct: 27  LSAPIVKAVAGQGYETPSPIQVRAIPAVLKGRDVMAAAQTGTGKTLVFTLPVLERLSKLA 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A+   AL + PTRELAVQ+G  +        +      GGV ++ +   L+ G  
Sbjct: 87  P--VQANQVRALVLVPTRELAVQIGESVTTFGRHLHLRSTAVFGGVKINPQMMKLRGGVD 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +    L+ +VLDEAD ML++GF  DI  I+   P +R+ LMFS
Sbjct: 145 VLVATPGRLLDLHSKNAVKFDRLEVLVLDEADRMLNMGFIHDIGKIIALLPNQRQTLMFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  LA+    D V +++A  N     I      V  + +   +  ++  +  + 
Sbjct: 205 ATFPDEIRDLARGLLHDPVEISVAPPNSVLKIIKQWVYPVDQNKKSALLSKLICDNQWEQ 264

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L +      A+ G+ SQ  R+ AL+  + G  R+ +ATD+AAR
Sbjct: 265 VLVFSKTKNGADRLVRHLEKEGIDAAAIHGDKSQGARTKALENFKKGTVRILVATDIAAR 324

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ +L    E+ +H  GRTGRAG  G  + ++  +  ++   + R   + 
Sbjct: 325 GLDIYQLPQVVNFDLPHVKEDYVHLMGRTGRAGAPGQVISLVCADEFQQLSDIERLIKMV 384

Query: 367 VVWEPAPSVEAI 378
           +  +     E I
Sbjct: 385 LTRKIIDGFEPI 396


>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
 gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
          Length = 397

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|92081528|dbj|BAE93311.1| zinc finger protein [Ciona intestinalis]
          Length = 556

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 109/418 (26%), Positives = 185/418 (44%), Gaps = 20/418 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+ + I   + + GY   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 108 ISTFEMANLQETILVNVQKAGYDRPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPV 167

Query: 59  ASTLLAENDR---FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+    +   FS    P A+ I PTREL  Q+  E       T +   V  GG SV 
Sbjct: 168 LTKLVESGVKSSEFSEKKTPQAIIIGPTRELVNQIFLEARKFSRSTIIHPVVVYGGTSVG 227

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R +Q G  +++ TPGRL D I    + + +++ ++LDEAD MLD+GF  +I  ++  
Sbjct: 228 YQIRAVQKGCDVLIATPGRLMDFINRGLIGLENVRFIILDEADRMLDMGFESEIRKLVSL 287

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSD 230
               ++    +   S       +    D +R +             SD+    + V   D
Sbjct: 288 PGMPQKNNRHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRVGGACSDVTQTVISVEWKD 347

Query: 231 RDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +    +           +VF  T+        VL +  F   ++ G+  QQ+R  AL+
Sbjct: 348 KRSKLLELIADVNETKSRTLVFVETKRGADFLACVLCQEDFPTTSIHGDRLQQDREQALR 407

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +AT VAARG+D+P +E VI+ ++    +  +HR GRTGR G  G +    
Sbjct: 408 DFKLAVCPILVATSVAARGLDIPKVEHVINYDMPREIDEYVHRIGRTGRCGNLGRATTFF 467

Query: 349 P-QNMQRRAERLFRE-----ANVSVVWEPAPSVEAIR--ERDAQRILQDPLFLDSIQG 398
             +  Q     L +          V W    S+  +R  E+  + +++     +  +G
Sbjct: 468 DNKKTQIWLAHLLKFFPRLNKKFQVGWGNVQSLLLVRISEQKKEDLVEKTFGREVEKG 525


>gi|117921774|ref|YP_870966.1| ATP-dependent RNA helicase SrmB [Shewanella sp. ANA-3]
 gi|117614106|gb|ABK49560.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 419

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 188/385 (48%), Gaps = 9/385 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + E+L   G+++ T++Q+  L   L ++D+L  A TG+GKT +F L     
Sbjct: 3   FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+    R+S  +    L + PTRELA Q+ R    L    G+ +A+  GGV    +   L
Sbjct: 63  LIDFPRRYSGHA--RILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++   I+V TPGRL +++     +   +  +++DEAD MLD+GF   ++ I   +  +++
Sbjct: 121 KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNIL 239
            ++FSAT+  +          +          R+     ++ +        +   +  +L
Sbjct: 181 NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKEHKIALLCYLL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K AIVF  TR  VS     L +       + G++ Q++R  AL     G   V +
Sbjct: 241 KQEDVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ ++  + ++ +HR GRTGRAG KG ++ +   +  R   ++
Sbjct: 301 ATDVAARGIDIDDISHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI 360

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            R     +       +E +R +  +
Sbjct: 361 ERYIEQPLKRRI---IEELRPKHKE 382


>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
 gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
 gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
 gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
 gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
 gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
 gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
 gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
 gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
 gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
          Length = 397

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|304398130|ref|ZP_07380005.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
 gi|304354416|gb|EFM18788.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
          Length = 430

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 182/365 (49%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALDTKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L A TG+ + +  GG    ++ + L+ G 
Sbjct: 76  AAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYGGDGYDKQLKVLEQGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+V T GRL D+ +   +N+  ++ +VLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIRWLFRRMPPATQRLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +   A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPSIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|167860961|gb|ACA05234.1| vasa-like protein [Apostichopus japonicus]
          Length = 530

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 185/376 (49%), Gaps = 12/376 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   IGE +    Y   T VQ+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 76  DLYDSIGENVRRAKYDKPTPVQKYGIPIVSAGRDLMACAQTGSGKTAAFLLPILSGLLRD 135

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + S  S    P  + ++PTRELA+Q+  E      KT +   V  GG  V  +   + 
Sbjct: 136 GLQSSALSGQQCPQCIVVSPTRELAIQIFDEARKFSYKTMIKCVVIYGGTKVQHQTSMVD 195

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G +++V TPGRL   I    +++  +K +VLDEAD MLD+GF  D+E ++++       
Sbjct: 196 RGCNVLVATPGRLLHFINSGMISVEKVKYLVLDEADRMLDMGFGPDMEKLVNNPAMPKKG 255

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R  LMFSAT    +   A  Y  + + + +      +SD+    V V  + + + ++ I
Sbjct: 256 ERHTLMFSATFPNEVQERAAEYLDNYLFLTVGRVGGANSDVRQVVVEVPQAAKKDKLIEI 315

Query: 239 -LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+         L++  F   ++ G+  Q+ER  AL   +  RA V
Sbjct: 316 LQSQPENDRTLVFTETKRGADFLASYLSQSGFPTTSIHGDREQREREEALNDFKRNRASV 375

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQ 353
            +AT VA+RG+D+P ++ V++ +L S  ++ +HR GRTGR G  G+S           + 
Sbjct: 376 LVATSVASRGLDIPAVKHVVNFDLPSEIDDYVHRIGRTGRCGNTGLSTSFYNPEKDATIS 435

Query: 354 RRAERLFREANVSVVW 369
           R   ++  +A+  V  
Sbjct: 436 RALIKILADAHQDVPE 451


>gi|157838001|ref|NP_082350.3| ATP-dependent RNA helicase DDX42 [Mus musculus]
 gi|123796460|sp|Q810A7|DDX42_MOUSE RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|74146847|dbj|BAE41388.1| unnamed protein product [Mus musculus]
 gi|123242261|emb|CAM23778.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 929

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 887

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/478 (23%), Positives = 204/478 (42%), Gaps = 26/478 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + +A+ E+GY + T +Q   +   L+ +D+  SA TGSGKT AF L   
Sbjct: 269 KSFNDMNLSRPLLKAIYEKGYEHPTPIQSRCIPLLLKGRDICASAMTGSGKTAAFILPTL 328

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRE 117
             LL    R       L +A+ PTRELA Q   +       T +   +          + 
Sbjct: 329 ERLLY---RDRSRKETLVVALLPTRELAAQCYEDCSHFLQYTDIRCCLITGGNLKIQKQI 385

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +        I+      +   +      +  ++ ++LDEAD +L+LGF   I+ ILD  P
Sbjct: 386 QVLQSKPEIIIATPGRVVDHLLNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDHIP 445

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----VALSDRDN 233
             R+ ++FSAT++  I  L K   K+ +RV+  S     S +    +       +  +  
Sbjct: 446 TARQTMLFSATMTDDIEQLVKLSLKNPIRVSCDSRTGVASGLTQEFIKLADDENIIMKQA 505

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++         I+FC+T++ V +   +L     +V  LS  L+Q  R   L      
Sbjct: 506 ILLSLCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKELYKFASH 565

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-- 351
                + TDVA+RG+D+  ++ VI+ ++  N +  +HR GRT RAG  G++V +  ++  
Sbjct: 566 ETDFLVCTDVASRGLDIKGVKTVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSI 625

Query: 352 -MQRRAERLFREANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            + R+  R  ++   SV     P  S+E   ++  +   Q       ++ +E        
Sbjct: 626 AILRKIVRHSKKKGQSVQQRVIPTESIEFWTDKIEEMKPQLKELEQQLRMEE-------- 677

Query: 409 AKHDPEKIAAGFLRIH--RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                E +AA    I   R  + +      +   + R+   + ++A  V        K
Sbjct: 678 EMQQAEMLAAKNENIEEFREDIMSRPRKEWIMSKAQREELNEKAKAQMVEQDEPTKKK 735


>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
 gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
          Length = 474

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 126/393 (32%), Positives = 203/393 (51%), Gaps = 14/393 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +   Y   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 49  KSFKDLGIIDSLCDACTSLRYKAPTPIQAESIPLALQGRDLVGLAETGSGKTAAFALPIL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +   +        L +APTRELAVQ+    E L +   V  AV +GG+ +  +  
Sbjct: 109 QALMEKPQPY------FGLVLAPTRELAVQISEAFEALGSLISVRCAVIVGGMDMISQSI 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 163 SLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILKVLPR 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V+
Sbjct: 223 ERRTYLFSATLSSKVESLQRASLSNPLRVSISSNKYQTVSTLLQSYIFIPHKYKDVYLVH 282

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL     ++ I+F  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 283 ILNEFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSGSRNI 342

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAGR G ++ ++ Q      +
Sbjct: 343 LVATDVAARGLDIPAVDLVLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQ 402

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQRI 386
           R+       +        E +    R  DAQR+
Sbjct: 403 RIEVALGKQLPEHKTEKEEVMVLSDRVGDAQRM 435


>gi|70732712|ref|YP_262475.1| DEAD-box ATP dependent DNA helicase [Pseudomonas fluorescens Pf-5]
 gi|68347011|gb|AAY94617.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           fluorescens Pf-5]
          Length = 444

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 1/368 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  AL   GY   T VQ   +   L  +D++ +AQTG+GKT  F L L   L  E  +
Sbjct: 10  EPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLLQLLTLEGPK 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
              +++  AL + PTRELA QV   +        +      GGVS++ +   L+ G  ++
Sbjct: 70  VD-SNSVRALILVPTRELAEQVHESVRQYAEHLPLRTYAVYGGVSINPQMMKLRKGVDLL 128

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D  R   +  S L+ +VLDEAD MLDLGF ++++ I  + PKKR+ L+FSAT
Sbjct: 129 VATPGRLLDLFRQNAVKFSQLQTLVLDEADRMLDLGFSEELKSIYAALPKKRQTLLFSAT 188

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            S AI  LA     D + + ++  N   + +    V V    +     ++LR +  K  +
Sbjct: 189 FSDAIRQLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFSHLLRKNRWKQVL 248

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  TR  V    + L         + G+  Q  R  AL   +    ++ +ATDVAARG+
Sbjct: 249 VFAKTRNGVDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGL 308

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL LV++ +L    E+ +HR GRTGRAG  G ++ ++  +       +      ++ 
Sbjct: 309 DIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADEVNLLSAIEMLTRQTLK 368

Query: 369 WEPAPSVE 376
                  E
Sbjct: 369 RHEEQDFE 376


>gi|119774410|ref|YP_927150.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
 gi|119766910|gb|ABL99480.1| DEAD/DEAH box helicase-like protein [Shewanella amazonensis SB2B]
          Length = 456

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 179/375 (47%), Gaps = 5/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + ++L   G    T +Q   +   L  KD++ S++TGSGKT+AF L     ++  
Sbjct: 7   SLDKRLMQSLKHMGIETPTPIQSQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQRVI-- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 65  SSKALSKKDPRVLILLPTRELAQQVYAQLRLLVANTQYRAISVLGGENFNDQAKALAREP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           H +V TPGR+ DH++ + L ++ L+ +VLDEAD MLDLGF   ++ I    D   ++  M
Sbjct: 125 HFIVATPGRIADHLQQRHLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHRRRQTLM 184

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +          A+  ++       A             +   L  ++  +  +L  +
Sbjct: 185 FSATLEHGEVHELAAELLKEPEHVAIDAVHLGHGDIEQQILLADHLEHKEALLERLLSGN 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  ++F +TR    R   +LAE  +   ALSGEL Q +R+  +        R+ + TD
Sbjct: 245 NFRQVMIFTATRQDTERLATLLAEKGYNTAALSGELRQAQRNQIMDSFSREHHRILVTTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+ ++ LV++ ++    E  +HR GRTGRAG KG ++ ++         ++   
Sbjct: 305 VASRGLDISNVSLVVNFDMPKFAEEYVHRIGRTGRAGNKGTAISLVGPKDWDNFLKVQIL 364

Query: 363 ANVSVVWEPAPSVEA 377
              +  +     +EA
Sbjct: 365 LQKTFEFSVLEGLEA 379


>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
          Length = 478

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 127/413 (30%), Positives = 209/413 (50%), Gaps = 10/413 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + EA     Y   T +QE  +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 57  KTFKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPIL 116

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P      L +APTRELA Q+G+  E L +   +  AV +GG+ +  +  
Sbjct: 117 QALL---DKPQPLFG---LVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAV 170

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH  + KG ++  LK +V+DEAD +LD+ F   I+ +L   P+
Sbjct: 171 ALGKKPHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPR 230

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +   +D VRV+++S   Q         +++    +D  ++ 
Sbjct: 231 ERRTYLFSATLSSKVESLQRASLRDPVRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIY 290

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     K+ I+F  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 291 LVNEFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDI 350

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +++V++ +L  + +  +HR GRT RAG+ G+++ ++ Q      +
Sbjct: 351 LVATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQ 410

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           R+       +   P    E +  +      Q    ++     EK+      AK
Sbjct: 411 RIEAALGKKLDIYPTEKEEVLAFQHRVEEAQRHARIEMKNLSEKRHGKGKRAK 463


>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
          Length = 516

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/368 (30%), Positives = 185/368 (50%), Gaps = 11/368 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA---ENDR 68
            E + +  Y   T +Q+  +   L ++D++  AQTGSGKT AF L + ST+L    E   
Sbjct: 89  KENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLSTMLRNGIEGSS 148

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +S    P A+ + PTREL  Q+  E       T V   V  GGV    + R+++ GAH++
Sbjct: 149 YSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTIVRPVVVYGGVQTSYQLREIEKGAHMI 208

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML----M 184
           VGTPGRL D I    +++  +K ++LDEAD MLDLGF+DDI+ +++      +      M
Sbjct: 209 VGTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNELGMPPKQERQTLM 268

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + +LA+    D + V +      ++DI+     V   D+   ++++L     
Sbjct: 269 FSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQFDKRQKLIDLLNACPN 328

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF   + +       L++      ++ G+  Q+ER  AL   + GR  + +AT VA
Sbjct: 329 ERVLVFVEQKRNADFLASFLSQSELPTTSIHGDREQREREIALNDFKSGRKPILVATSVA 388

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRRAERLF 360
           ARG+D+P +  V++ ++    +  +HR GRTGR G  G +           + R   ++ 
Sbjct: 389 ARGLDIPGVMHVVNYDMPKEIDEYVHRIGRTGRCGNMGKATTFFNPETDAGLARALAKIL 448

Query: 361 REANVSVV 368
            +A   + 
Sbjct: 449 TDAQQELP 456


>gi|91784149|ref|YP_559355.1| putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
 gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
          Length = 537

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 128/382 (33%), Positives = 194/382 (50%), Gaps = 20/382 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L          
Sbjct: 55  LSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQ 114

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 115 KTQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 174

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +
Sbjct: 175 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIE 234

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DIE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I        
Sbjct: 235 DIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVD 294

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 295 DRDHKDRLLDHLLRDSGLDQAIVFTATKIDADQLAGRLADAGFESAALHGDLPQGARNRT 354

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 355 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 414

Query: 347 VIPQNMQRRAERLFREANVSVV 368
           ++    Q   +R+ R     + 
Sbjct: 415 LVHHAEQGALKRIERFVRTPLA 436


>gi|91773889|ref|YP_566581.1| DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM
           6242]
 gi|9581858|gb|AAF89099.1|AF199442_1 DEAD-box RNA helicase [Methanococcoides burtonii]
 gi|91712904|gb|ABE52831.1| Dead box RNA helicase [Methanococcoides burtonii DSM 6242]
          Length = 522

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 196/381 (51%), Gaps = 12/381 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +     I  ++ ++ +   T +Q+  +   L  KD++  A TGSGKT+AFG  +
Sbjct: 1   MESFKKLGIEDAILRSIEDKKFEEPTEIQKMAIPLILEGKDIIGGAATGSGKTLAFGCGI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +          +   AL + PTRELA QV   L+       + VA   GGV+++ + 
Sbjct: 61  IQKI-------EKGNGIRALVLTPTRELAEQVQNSLKEFSRHKQLRVAPIYGGVAINPQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L   A +VV TPGRL DHI    +++  ++ +VLDEAD MLD+GF DD+E I+D  P 
Sbjct: 114 RQL-ERADVVVATPGRLLDHIERGTIDLGDVEILVLDEADRMLDMGFIDDVEEIIDECPS 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ +MFSAT+S  I  L+  Y  +  +V   +            + V    + + +V++
Sbjct: 173 DRQTMMFSATVSKDIQYLSSKYMNNPSKVFAKAYVDSDKL-KQVYIDVPKKMKFSLLVHL 231

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+   +   +VFC+TR++V    K L ++    +A+ G  +Q +R + L       A   
Sbjct: 232 LKSEKSGLVMVFCNTRSNVDFVQKNLRKNDIDAIAIHGGHTQAKRKSTLSKFHSSNAHAL 291

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARG+D+P +  V + ++  +P   +HR GRT RAGR+G  + V+    +    R
Sbjct: 292 VCTDVAARGLDIPHVSHVYNFDIPDDPSEYVHRIGRTARAGREGKVINVVADVDKGGFTR 351

Query: 359 LFR-EANVSVVWEPAPSVEAI 378
           L +   N  +  E  P  E +
Sbjct: 352 LSKMHRNFKIEREDLPEFERV 372


>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351656|sp|Q09903|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
 gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
           [Schizosaccharomyces pombe]
          Length = 754

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 120/417 (28%), Positives = 214/417 (51%), Gaps = 12/417 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I + LS  G+   T +Q+  +   L  KD++ +A TGSGKT AF + +   LL  
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLY- 323

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         L + PTRELA+Q       + + T ++V +CIGG+S+  + ++L+   
Sbjct: 324 --RPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRP 381

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGR  DH+R      + +++ +V+DEAD ML+ GF D++  I+ + PK R+ ++
Sbjct: 382 DIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTML 441

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  L +      VRV + ++      +    V V       R   ++ + + 
Sbjct: 442 FSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKE 501

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  ++A   +   +          + G LSQ++R  AL+  RDG+    +AT
Sbjct: 502 LFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLAT 561

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+  +E+VI+ E  +  E  LHR GRT RAGR G ++ +  +  ++  + +F+
Sbjct: 562 DVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFK 621

Query: 362 ---EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                N  +V       +   E+  + I +    +  +  +EK+  ++ +A+ D +K
Sbjct: 622 NSSAQNTKLVNRNLDFNKV--EKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKK 676


>gi|126208042|ref|YP_001053267.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           L20]
 gi|126096834|gb|ABN73662.1| ATP-dependent RNA helicase RhlB [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 406

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/343 (32%), Positives = 184/343 (53%), Gaps = 3/343 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L  +D+   AQT +GKT+AF +A+   LL  N
Sbjct: 15  IHENVLAALDSKGFEFCTPIQAKTLPITLAGQDIAGQAQTRTGKTLAFLIAVFHYLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P A+ +APTRELAVQ+G + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DSVTNKNQPRAIILAPTRELAVQIGSDAELLVKHSDLKLALAYGGDGYDKQVQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF  DI +++   PK  +   ++
Sbjct: 134 ILVGTTGRVIDYVKQGIINLDKVQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSARVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+         L     +V  L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 DRCMIFANTKHKCEEIWNYLVADGHRVGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+  
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISF 356


>gi|301171475|ref|NP_001180346.1| ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]
 gi|296235291|ref|XP_002762846.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 2 [Callithrix
           jacchus]
 gi|297709770|ref|XP_002831597.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Pongo
           abelii]
 gi|194388152|dbj|BAG65460.1| unnamed protein product [Homo sapiens]
          Length = 646

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 163 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 222

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 342

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 343 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 402

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 403 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 523 GLATSFFNERNINITKDLLDLLVEAKQEVP 552


>gi|315230959|ref|YP_004071395.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
 gi|315183987|gb|ADT84172.1| cold-shock DEAD-box protein A [Thermococcus barophilus MP]
          Length = 389

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 206/388 (53%), Gaps = 12/388 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALA 59
            FE   + +    A+  +G+   T +Q  ++   LR   D++  +QTG+GKT +F L L 
Sbjct: 9   SFEKLGLSENTLGAVRRKGFSEPTDIQREVIPLFLRGDADIVGQSQTGTGKTASFALPLV 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              A+ + PTRELA+QV  E++ L  K  + V    GG  +  + R
Sbjct: 69  DVIN------EYEREVQAIILTPTRELALQVADEIKSLRGKKRIKVLSVYGGQPIGPQIR 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ GAHIVVGTPGR+ DHIR   L +  ++  +LDEAD MLD+GF DDI  I   +P+ 
Sbjct: 123 ALRKGAHIVVGTPGRVLDHIRRGTLRLDGIQYFILDEADRMLDMGFIDDIRAIFRETPRD 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+LMFSAT+   +  LAK Y K+   +  +S+    + ++   + V  + + +  V   
Sbjct: 183 KRVLMFSATMPREVLKLAKRYMKEYELIRTSSDEPVPNLVEQEYIEVVPARKIS--VLER 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     IVFC T+       + LA   +   AL+G++SQ+ R  AL   +  +  + +
Sbjct: 241 ILNSEFYGIVFCQTKRETRILAEKLARIGYSAEALNGDMSQKSRERALMRFKRRKINILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  +++  L  N E  +HR GRTGRAG+KG ++  I     RR   +
Sbjct: 301 ATDVAARGIDVQDITHIVNYSLPQNAEMYIHRIGRTGRAGKKGKAITFIMPGEYRRLRYI 360

Query: 360 FREANVSVVWEPA-PSVEAIRERDAQRI 386
              A VS+       S++  + RD+++I
Sbjct: 361 ENIAKVSIKKSKLQESIDREKRRDSRKI 388


>gi|133777033|gb|AAH43036.4| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Mus musculus]
          Length = 810

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 141 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 201 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 259

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 260 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 319

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 320 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 379

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 380 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 439

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 440 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 496


>gi|109116835|ref|XP_001116381.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 5 [Macaca
           mulatta]
 gi|109116837|ref|XP_001116390.1| PREDICTED: ATP-dependent RNA helicase DDX42-like isoform 6 [Macaca
           mulatta]
          Length = 937

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|302817066|ref|XP_002990210.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
 gi|300142065|gb|EFJ08770.1| hypothetical protein SELMODRAFT_30996 [Selaginella moellendorffii]
          Length = 640

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 143/538 (26%), Positives = 247/538 (45%), Gaps = 39/538 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I   L++RG  +L  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +    
Sbjct: 10  VSQEIVGHLADRGITHLFPIQRAVFQPAMKGVDLIARAKTGTGKTLAFGIPIMDRIYRSR 69

Query: 67  DRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +    S   P AL +APTRELA QV  E      +   V     GGVS+  ++R L  G
Sbjct: 70  SKSQRRSFRGPAALVLAPTRELAKQVETEFMESGKELATVC--VYGGVSIMSQKRLLSRG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + VGTPGR+ D +    L++S ++ +VLDEAD+ML +GF +D+E I++  P+KR+ ++
Sbjct: 128 VDVAVGTPGRIIDLLEQGCLDLSQVECMVLDEADQMLAVGFEEDVEKIMEQLPEKRQNML 187

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   +  L++ +    + ++    + E        Y       + R      I  Y
Sbjct: 188 FSATMPGWVQKLSRKFLNKPLTIDLVGESDEKLAEGIKLYAVQTSQAAKRKILSDVITVY 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF  T+      +  +   L    AL G+++Q +R   L   R+GR  + +AT
Sbjct: 248 GKGGKTIVFTQTKRDAEEVSMAMNRTLGC-EALHGDIAQFQREKTLAAFREGRFLILVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ D++L+IH +L  + E  +HRSGRTGRAG+ G ++       +R  +   R
Sbjct: 307 DVAARGLDITDVDLIIHYDLPRDSETFVHRSGRTGRAGKDGSALVFFSPQERRILKHFER 366

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE--KIAAG 419
           +   S  ++  P  + +    + + ++    +  +  D K++      K   E    A  
Sbjct: 367 QVGCSFQFKSMPHFDEVLAASSSQAVE---LIKGVHPDLKQVFMATAEKLLDEHGTAAFA 423

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
               H +G   P E   +  +         SRA                F L+V      
Sbjct: 424 AAIAHMSGFSQPPEQRSLISLEAGYMTLKFSRAPGN-------------FPLAV------ 464

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSADGV-DLLRRTVKLDKGIQ 532
             R ++  +   S     +IG +++  +        ++      DLL +++     I+
Sbjct: 465 --RHVVGAIASLSEKAADNIGKVQMIDEKNVEGAVFDLPEHIATDLLSKSMPSGTRIE 520


>gi|291407215|ref|XP_002720005.1| PREDICTED: CG7878-like [Oryctolagus cuniculus]
          Length = 635

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 180/378 (47%), Gaps = 7/378 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+ +   + +  +   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 235 FAQYPE-LMRNIKKASFQKPTPIQSQAWPVILQGIDLIGVAQTGTGKTLSYLMPGFIHLD 293

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G   +   GG +   +  D+  
Sbjct: 294 SQPTSREERNGPGMLVLTPTRELALQVESECSK-YSYKGFKSSCIYGGGNRRGQIEDIAK 352

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLDLGF   I  IL      R+ +
Sbjct: 353 GVDIIIATPGRLNDLQLNNHVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTV 412

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNILRY 241
           M SAT   AI  LA +Y KD + V + + +        + V+       R      +   
Sbjct: 413 MTSATWPDAIRRLAHSYLKDPMMVYVGTLDLVAVSTVQQNVIVTTEEEKRALIQEFLENM 472

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S + +       L      + +L G+  Q +R  AL+  R G+ ++ IAT
Sbjct: 473 TPRDKVIVFVSRKITADDLASDLGIQGIPIESLHGDREQSDREQALEDFRTGKVKILIAT 532

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAG+ G S+ ++  N  + A+ L +
Sbjct: 533 DLASRGLDVNDITHVYNYDFPRNIEEYVHRIGRTGRAGKVGTSITLVTPNDAKIADELIK 592

Query: 362 ---EANVSVVWEPAPSVE 376
               AN +V  +     E
Sbjct: 593 ILERANQNVPEDLVKMAE 610


>gi|242050370|ref|XP_002462929.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
 gi|241926306|gb|EER99450.1| hypothetical protein SORBIDRAFT_02g034740 [Sorghum bicolor]
          Length = 745

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 118/504 (23%), Positives = 216/504 (42%), Gaps = 25/504 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +P  Q   + L + G+  ++ +Q A L   L  +DVL +A+TGSGKT+AF + + 
Sbjct: 62  TLFDELPLSQKTKDGLRKAGFTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVL 121

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  R+ P      + ++PT +LA Q+   +  +           +G        +
Sbjct: 122 EKLYRE--RWGPEDGVGCIILSPTNDLAGQIFEVITTVGQFHNFSGGAIVGKRKGIELEK 179

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  N  +I+V TPGRL  H       + S L+ +VLDEAD++LD GFR  ++ I+   PK
Sbjct: 180 EHVNSLNILVCTPGRLVQHLNETANFDCSQLQLLVLDEADQILDHGFRSQVDAIISQIPK 239

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT + ++           + + V+  ++      ++  A++V L  + N + 
Sbjct: 240 VRQTLLFSATQTKSVKDLARVSLRDPEYISVHEEAKTATPDTLEQYAMIVPLEQKLNMLW 299

Query: 237 NILRYHGAKNAIVFCST-RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + ++ H     IVF S+ +     +           +       + E   A+    +   
Sbjct: 300 SFIKRHLNSKTIVFLSSVKQVKFVYEIFKKLRPGIPLKCMHGRMKYEVQQAIVADFNETT 359

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  +TD+++RG+D+ +++ V+  +   N +N +HR GRT R  +KG S+  +    +  
Sbjct: 360 SVLFSTDISSRGLDIENVDWVVQVDCPENIDNYIHRVGRTARYNKKGKSLVFLCPEEEAM 419

Query: 356 AERL---FREANVSVVWEPAPSVEAIRERDAQRILQDP-----------LFLDSIQGDEK 401
            E+L     +  + +    A  +E I +  A  +++ P            +L SI   + 
Sbjct: 420 LEKLKATESKIPIHIRKPKAEQLEQISQNIASVLVKFPSLQDLGKRAFVTYLKSIYLQKD 479

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
           K V   L++   E+ AA    +          I+    VS +D    D +  K       
Sbjct: 480 KKV-FDLSRFSAEQFAAYAASLGLPVTPKIRFISHKKNVSKKDMEDSDMKQMKSSSKREV 538

Query: 462 NFKGSSWFSLSV--GSKQKAEARW 483
                    LSV  G       + 
Sbjct: 539 IITPKINSDLSVCDGDDDILYPKK 562


>gi|73965187|ref|XP_537598.2| PREDICTED: similar to DEAD box polypeptide 42 protein isoform 1
           [Canis familiaris]
          Length = 696

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|12381896|dbj|BAB21258.1| eukaryotic initiation factor 4A [Oryza sativa]
 gi|12381898|dbj|BAB21259.1| eukaryotic initiation factor 4A [Oryza sativa]
          Length = 414

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 190/375 (50%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F++  + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +
Sbjct: 40  FESFDDMGLQENLLRGIYAYGFEKPSAIQKRGIVPFCKGLDVIQQAQSGTGKTATFCSGI 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L              +L +APTRELA Q+ + +  L    GV V  C+GG SV  ++
Sbjct: 100 LQQLDY------GLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREQQ 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L +G H+VVGTPGR+ D +R + L   H+K  VLDEADEML  GF+D I  I    P 
Sbjct: 154 RILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPP 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT+ P    +   +    VR+ +  +      I      +     + + + +
Sbjct: 214 KIQVGVFSATMPPEGLEITLRFMDKPVRILVKRDELTREGIKQFYVNVEKEDWKLDTLCD 273

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +T   V   T  +      V A  G++ Q  R   ++  R G +RV
Sbjct: 274 LYDSLAITQSVIFVNTLRMVDWLTDKMRSRDHTVSATHGDMDQITRDIIMREFRSGSSRV 333

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+  RGID+  + LVI+ +LS+  EN LHR GR+GR GRKG+++  + ++ +R   
Sbjct: 334 LITTDLLDRGIDVQQVSLVINYDLSTQTENYLHRIGRSGRFGRKGVAIIFVTRDDERMLF 393

Query: 358 RLFREANVSVVWEPA 372
            + R  N ++   PA
Sbjct: 394 DIQRFYNGTIEELPA 408


>gi|58263404|ref|XP_569112.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134108568|ref|XP_777235.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687159|sp|Q5KMN6|HAS1_CRYNE RecName: Full=ATP-dependent RNA helicase HAS1
 gi|50259920|gb|EAL22588.1| hypothetical protein CNBB4650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223762|gb|AAW41805.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 607

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 124/478 (25%), Positives = 214/478 (44%), Gaps = 12/478 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+      A+   G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 135 NLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELL--S 192

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + I+PTRELA+Q+    + L         V +GG +   E   L  G 
Sbjct: 193 TLRFKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGV 252

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++        +LKA+V+DEAD +L++GF ++++ I+   P + R  M
Sbjct: 253 NLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQSM 312

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   +   L+
Sbjct: 313 LFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTFLK 372

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      +  A + + 
Sbjct: 373 KNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAPAGILLC 432

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S+  +  +      R  
Sbjct: 433 TDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSELGFL-RFL 491

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-A 418
           + A V +     P  + A  ++  + ++    +L++   D  +      A +  +KI   
Sbjct: 492 KVAKVPLNEYQFPQKKVADVQKQLESLISKNHYLNTSARDGYRSYLQAYASYSLKKIFDV 551

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
             L + + G      + P   +S        SR            K  +++  + G K
Sbjct: 552 NKLDLAKVGKAFGFAVPPKVNISVGSVKAKKSRDEDESSDDDGQPK-KAYYR-NRGRK 607


>gi|146319393|ref|YP_001199105.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146321596|ref|YP_001201307.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253752416|ref|YP_003025557.1| helicase [Streptococcus suis SC84]
 gi|253754242|ref|YP_003027383.1| helicase [Streptococcus suis P1/7]
 gi|253756176|ref|YP_003029316.1| helicase [Streptococcus suis BM407]
 gi|145690199|gb|ABP90705.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145692402|gb|ABP92907.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251816705|emb|CAZ52347.1| putative helicase [Streptococcus suis SC84]
 gi|251818640|emb|CAZ56475.1| putative helicase [Streptococcus suis BM407]
 gi|251820488|emb|CAR47236.1| putative helicase [Streptococcus suis P1/7]
 gi|292559021|gb|ADE32022.1| putative ATP-dependent RNA helicase [Streptococcus suis GZ1]
 gi|319758822|gb|ADV70764.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
          Length = 447

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   I EAL E  +V  T VQE ++   L  +D++  ++TGSGKT  F + + 
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E D+        A+  AP+RELA Q+ +    L + +   V V           +
Sbjct: 61  QKLNEELDQV------QAVITAPSRELATQIYQAARQLASHSDTEVRVTNYVGGTDKNRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIVVGTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S 
Sbjct: 115 IDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + ++FSATI   +    K Y  + V   I +       I+   +     DR+  I+
Sbjct: 175 PKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQIL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L  +  +V  + G++  +ER   +  +++   +
Sbjct: 235 EVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPSDDADI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +  N+  + +   + E               F+D+   D +   +    K D E I
Sbjct: 355 RELEK-LNIKFLPKEMKNGE---------------FVDTYDRDRRANREKSREKLDLEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKR 444


>gi|308807146|ref|XP_003080884.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
 gi|116059345|emb|CAL55052.1| DEAD box protein P68 (ISS) [Ostreococcus tauri]
          Length = 571

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 186/373 (49%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  + + I   +  R Y   + +Q   +   L  +DVL  A+TGSGKT AF + +
Sbjct: 110 IESFEDMELKRDILADIKFREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPM 169

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               L +         P A+ +APTRELA Q+  E +     + G   A+ +GG ++  +
Sbjct: 170 IQHALNQAP-LRQGDGPFAIVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQ 228

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R  L+ G  IVV TPGRL DH++    N++ +  VVLDEAD MLD+GF   I  +L + P
Sbjct: 229 RSMLRGGVQIVVATPGRLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMNLP 288

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   +  LA +Y    V+V +   +   +++  +   V  +++ + +V 
Sbjct: 289 KPHQTLLFSATMPVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRLVT 348

Query: 238 ILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L           H     +VF   +       ++L        AL G  SQ ER  AL 
Sbjct: 349 MLISEQREAQKLGHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALH 408

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + GR  V +ATDVAARG+D+  +  V++ +L  N E+ +HR GRTGRAG  G S    
Sbjct: 409 DYKTGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFY 468

Query: 349 PQNMQRRAERLFR 361
                    ++ R
Sbjct: 469 TDRDSFIVAQIKR 481


>gi|320590111|gb|EFX02556.1| dead deah box RNA helicase [Grosmannia clavigera kw1407]
          Length = 1178

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 26/451 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + E + + GY   T++Q   L   +  +DV+  A+TGSGKT+AF + +   ++ + 
Sbjct: 545 LTRPMLEVIEQLGYDKPTAIQMQALPVIMSGRDVIGVAKTGSGKTMAFLVPMFRHIMDQE 604

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L + PTRELAVQ+ R+ +    K G+      GG  +  +  +L+ GA 
Sbjct: 605 RVRD--DGPIGLILTPTRELAVQIHRDCKPFAKKLGLRAVCAYGGPPIKDQIAELKRGAE 662

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV T GR+ D +      +  L+    +VLDEAD M D+GF   +  I  +    R+ L
Sbjct: 663 IVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANIRPDRQTL 722

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----L 239
           +FSAT+   I  L K      V + +  ++    +I     +    D+   ++ +     
Sbjct: 723 LFSATMPRIIDALVKKVLHSPVEITVGGKSVVAPEITQMVEVRDEKDKFLRLLELLGELY 782

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++F   +       + L    +  ++L G   Q +R + +   + G   V +
Sbjct: 783 MDDDDVRALIFVERQEKADELLRELLRKGYACMSLHGGKDQSDRDSTISDFKKGVCPVLV 842

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +  A  +
Sbjct: 843 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAPGI 902

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQ-DPLFLDSIQGDEKKMVDVL----LAKHDPE 414
            +    S   +P P          +R+L+    + + ++  + K         L K D +
Sbjct: 903 AKALEQS--GQPVP----------ERLLEMRKAWREKVKTGKAKDQSGFGGKGLEKLDKD 950

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           + AA             ++       +  ++
Sbjct: 951 REAARLRERKTHKAEGEDDDFDKETAAEDEK 981


>gi|292897893|ref|YP_003537262.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197741|emb|CBJ44836.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|312170722|emb|CBX78984.1| putative ATP-dependent RNA helicase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 430

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  APEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAASQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNLTAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
          Length = 463

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+ +   + + +A++  GY   TSVQE  +   L   D++VS+ TGSGKT AF L    
Sbjct: 2   TFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLPSLH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L+      +P + P  L + PTRELA QV + ++           A  +GG     + +
Sbjct: 62  RLIDRKP--APGAGPRVLVLTPTRELAQQVEKAVKTYARNLRYLNTACLVGGAPFFAQAK 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +VV TPGRL DH+  + L +S ++ +VLDEAD MLD+GF +DIE I+ ++P  
Sbjct: 120 LLSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRMLDMGFVEDIETIVAATPAS 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
           R+ L+FSAT+   +  LA+   ++  R+ IA+     ++I+ R  +   +  ++  + ++
Sbjct: 180 RQTLLFSATLDGVVGNLARKMTRNPQRIEIAATVENRANIEQRLLMADNIVHKNRLLESL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + A+VF +T+      +  L E  F   AL G++ Q  R+  L  +R GR  V 
Sbjct: 240 LGGDDLQQAVVFTATKRGAEEVSLNLQEKGFSAAALHGDMHQTARNRTLDKLRQGRIGVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  VI+ +     E+ +HR GRTGRAGR G+++             
Sbjct: 300 VATDVAARGIDVAGISHVINFDAPRQVEDYVHRIGRTGRAGRDGIAITFSGPREMGIIRA 359

Query: 359 LFREANVSVVWEPAPSVE 376
           + R     +       +E
Sbjct: 360 IERFTGKPLAVHVIEGLE 377


>gi|51595988|ref|YP_070179.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           32953]
 gi|186895088|ref|YP_001872200.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis PB1/+]
 gi|51589270|emb|CAH20891.1| ATP-dependent RNA helicase [Yersinia pseudotuberculosis IP 32953]
 gi|186698114|gb|ACC88743.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 460

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+  +      +  +   I+          R   ++++L Y+   
Sbjct: 185 SATYPSGIEQISARVQRQPL-NVEVGDTDEEPAIEQVFFETTREKRLPLLISVLSYYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELVI+ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R    +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSTNIMLEPEMVTLCIDGGRKAKIR 399



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|326534262|dbj|BAJ89481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L  N
Sbjct: 94  ISPRIVERLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHN 153

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++      PLA+ +APTRELA QV +E         +      GGV + ++ R L  G  
Sbjct: 154 EKNGSGRNPLAIILAPTRELARQVEKEFRESA---PLDTLCVYGGVPISQQMRTLNYGVD 210

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D +R   LN+S ++ +VLDEAD+ML +GF + +E I++  P+ R+ ++FS
Sbjct: 211 VVVGTPGRVIDLLRRGVLNLSEIQFMVLDEADQMLAVGFDEAVEVIMEKLPQNRQSMLFS 270

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  L   Y KD V +++  ++ Q          +   +   + +    I  +  
Sbjct: 271 ATMPSWIRKLTNQYLKDPVIIDLVGDSEQKLPEGISLYSIVSENYGKSSILGPLIKEHAD 330

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R    +        AL G++SQ +R   L   RDGR  + +ATDV
Sbjct: 331 GGKCIVFTQTKREADRLAYAMGRSYACQ-ALHGDISQNQRERTLSGFRDGRFNILVATDV 389

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LV+H E+ ++ E  +HRSGRT RAG+KG+++ +      R  + + ++ 
Sbjct: 390 AARGLDIPNVDLVVHYEIPNSSELFVHRSGRTARAGKKGIAILMYTYEQSRTVKGIEQDI 449

Query: 364 NVSVVWEP 371
                  P
Sbjct: 450 GCRFTELP 457


>gi|312370859|gb|EFR19169.1| hypothetical protein AND_22947 [Anopheles darlingi]
          Length = 490

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/412 (27%), Positives = 204/412 (49%), Gaps = 11/412 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + +A     +   + +Q   +   L  KD++  A+TGSGKT AF L +   LL    R
Sbjct: 57  DTLCQACRALKWKVPSKIQREAIPLALNGKDIIGLAETGSGKTAAFALPILQALLDNPQR 116

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           +       A+ + PTRELA Q+  + E L    GV   V +GG+ +  +   L    HI+
Sbjct: 117 Y------FAVVLTPTRELAYQISEQFEALGTMIGVKCCVVVGGMDLVAQALQLARKPHII 170

Query: 129 VGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH+          LK +V+DEAD +L++ F  ++  IL   P++RR  +FSA
Sbjct: 171 IATPGRLVDHLENTKGFGLKALKYLVMDEADRILNMDFEVEVNKILRVIPRERRTFLFSA 230

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   +D V+V ++S+ +    +    + +    +D  +V+IL      + 
Sbjct: 231 TMTKKVKKLERASLRDPVKVEVSSKYQTVDKLLQYYIFIPAKYKDVYLVHILNELAGNSF 290

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++FCST  +  R   +L       V L G+++Q +R  AL   +    ++ I+TDVA+RG
Sbjct: 291 MIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQTRQILISTDVASRG 350

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++V++ ++  + ++ +HR GRT RAGR G ++  + Q      +R+    +  +
Sbjct: 351 LDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQRIEHLLSKKL 410

Query: 368 VWE--PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
                    V A++ER A+   Q    ++    +E+K       K      A
Sbjct: 411 PEYKCEEDEVMALQERVAE--AQRTARMEQKDIEERKASKGAKGKRGAATAA 460


>gi|255548421|ref|XP_002515267.1| hypothetical protein RCOM_1346600 [Ricinus communis]
 gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis]
          Length = 791

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+      +  A+ ++GY   TS+Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 223 IKSFEDCSFSMQLMNAIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPM 282

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ V+   GG+S   + 
Sbjct: 283 IVHIM-DQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQF 341

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IVV TPGRL D ++ K LN+S    +VLDEAD M DLGF   I  I+     
Sbjct: 342 KELKAGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRP 401

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 402 DRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFE 461

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF S +A+V      LA+  F+V AL G+  Q  R   LQ  + G   
Sbjct: 462 KLPGMIDDGDVLVFASKKATVDEIESQLAQKGFKVAALHGDKDQASRMEILQKFKSGVYH 521

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V IATDVAARG+D+  L+ V++ +++ + +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 522 VLIATDVAARGLDIKSLKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLITQKEARF 581

Query: 356 AERL 359
           A  L
Sbjct: 582 AGEL 585


>gi|67516615|ref|XP_658193.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|74627495|sp|Q5BFU1|DBP4_EMENI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|40747532|gb|EAA66688.1| hypothetical protein AN0589.2 [Aspergillus nidulans FGSC A4]
 gi|259489143|tpe|CBF89171.1| TPA: ATP-dependent RNA helicase dbp4 (EC 3.6.1.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5BFU1] [Aspergillus
           nidulans FGSC A4]
          Length = 812

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/484 (22%), Positives = 201/484 (41%), Gaps = 13/484 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++P  +     L+   +  LT +Q   ++  L+ +DVL +A+TGSGKT+AF + + 
Sbjct: 48  ESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPIL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     ++S      AL I+PTRELA+Q+   L  +         + IGG S+  E+ 
Sbjct: 108 ENLY--RKQWSDHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQE 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +       +L+ +VLDEAD ++D+GF+  ++ I+   P +
Sbjct: 166 RLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPPE 225

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT +  ++ LA+   +D   V +     +   S +    V+  L  + + + +
Sbjct: 226 RQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDTLWS 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            +R +     IVF S+   V    +        +  L     Q++             + 
Sbjct: 286 FIRSNLKSKTIVFMSSGKQVRFVYESFRHMQPGIPLLHLHGRQKQGGRLDITTRFSQAQH 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + ++ 
Sbjct: 346 AVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEKG 405

Query: 356 AERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             R   +  V+V      + +   I+ +      +DP      Q      V  +  + D 
Sbjct: 406 MLRRLEQKRVTVERINVRANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVYIQKDK 465

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
           E      L++            P       D  ++   A +         + S       
Sbjct: 466 ETFNLKELKLDDFAASLGLPGAPRIKFIKGDDTKERKNASRATAYLTSGDEESDE---EG 522

Query: 474 GSKQ 477
           G K+
Sbjct: 523 GKKK 526


>gi|219119587|ref|XP_002180550.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408023|gb|EEC47958.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 552

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 191/378 (50%), Gaps = 16/378 (4%)

Query: 8   PQVIGEALSE----RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           P+ IG+ L       GY   T VQ+  +    + +D++  AQTGSGKT  F   +  +++
Sbjct: 126 PETIGDDLFRNTQLCGYSRPTPVQKYSVPICTQGRDLMACAQTGSGKTAGFLFPIIMSMI 185

Query: 64  AENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                  P +A     P AL +APTRELA Q+  E +     TG+   V  GG +V  + 
Sbjct: 186 KRGGSDPPENARRRIYPEALVLAPTRELAQQIHEEAKRFTYATGIASVVIYGGANVGDQL 245

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+++ G  ++V TPGRL D I    L +  +  +VLDEAD MLD+GF   I  I++ S  
Sbjct: 246 REMERGCDLLVATPGRLVDLIERGRLGMESVSFLVLDEADRMLDMGFEPQIRRIVEESGM 305

Query: 179 K----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R+ +MFSAT    I  LA ++ +D V + +        D+      V   D+ +A
Sbjct: 306 PGGIDRQTMMFSATFPANIQRLASDFMRDYVFLTVGRVGSASKDVTQTVEFVEERDKVDA 365

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L        ++F  T+ S      VL    F   ++ G+ SQ+ER +AL+  ++G 
Sbjct: 366 LMKFLLTIQDGLILIFVETKRSCDYVEDVLCGQGFPACSIHGDKSQREREDALRYFKNGN 425

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             +  AT VAARG+D+P++  V++ +L SN ++ +HR GRTGRAG  G ++  I ++   
Sbjct: 426 TPILCATSVAARGLDIPNVTQVVNYDLPSNIDDYVHRIGRTGRAGNTGAALSFINESNSG 485

Query: 352 MQRRAERLFREANVSVVW 369
           + R    L  E    V  
Sbjct: 486 VVRELRDLLDENEQDVPP 503


>gi|119471850|ref|XP_001258227.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
 gi|134034072|sp|A1DNF9|DBP4_NEOFI RecName: Full=ATP-dependent RNA helicase dbp4
 gi|119406379|gb|EAW16330.1| DEAD box RNA helicase (Hca4), putative [Neosartorya fischeri NRRL
           181]
          Length = 810

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 107/465 (23%), Positives = 197/465 (42%), Gaps = 10/465 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F ++P  +     L+   Y  LT +Q   ++  L+ +DVL +A+TGSGKT+AF + +
Sbjct: 46  FKSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPV 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 106 LENLY--RKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQ 163

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +L+ +VLDEAD +LDLGF+  ++ I+   PK
Sbjct: 164 ERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPK 223

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  ++ LA+   +D   V +         S +    V+  L  + + + 
Sbjct: 224 ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILW 283

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     +VF S+   V    +        +  +     Q++      +      +
Sbjct: 284 SFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSK 343

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G +V  +  + + 
Sbjct: 344 HCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEE 403

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +   +  V +      + +   I+++      +DP      Q      V  +  + D
Sbjct: 404 GMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYLGQKAFISYVKSVYIQKD 463

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            E      L++            P       D  +    A +   
Sbjct: 464 KEIFKLKELKLDEFAASLGLPGAPRIKFIKGDDTKQRKNAPRAAA 508


>gi|322490800|emb|CBZ26064.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 571

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 192/379 (50%), Gaps = 13/379 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F+ +   PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + 
Sbjct: 103 ITEFDMLTAVPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVP 162

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             + +  +         P+ + +APTRELA Q+ +E   +  ++ +      GG     +
Sbjct: 163 ALAHIALQEP-LKAGDGPMVIVLAPTRELAQQIEQEAIKVLPQS-IRCGCIYGGAPKGPQ 220

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I     
Sbjct: 221 LGLLRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIR 280

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QK+ VR+N+ S     + D+    +L + + + + + 
Sbjct: 281 PDRQTLMFSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELK 340

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  H  +  +VFC T+ +       L  +    +A+ G+  Q++R   L+  R     
Sbjct: 341 RLMERHRNQRVLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRL 400

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
             +ATDVAARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  +  
Sbjct: 401 CVVATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLN 460

Query: 355 -----RAERLFREANVSVV 368
                +   L   A   V 
Sbjct: 461 ASTVFQLVELVERAGQEVP 479


>gi|313837601|gb|EFS75315.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314972540|gb|EFT16637.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 536

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 195/376 (51%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 33  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 92

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV + +    +  G  V    GGV   
Sbjct: 93  QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSQNISTAASVRGARVLTVYGGVGYE 152

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   LQ G  +VVGTPGRL D  + K L++SH+  VVLDEADEMLDLGF  D+E ++  
Sbjct: 153 PQIDALQAGVDVVVGTPGRLLDLSQRKNLDLSHVHIVVLDEADEMLDLGFLPDVENLIGR 212

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 213 TPTPRQTMLFSATMPAPIMALARSQLNRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 272

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ + A+  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 273 IIGRILQANDAEKVIIFCRTKRACQRLSDDLNDRGFKARAIHGDLTQVAREKALKRFRHG 332

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 333 DVTILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGTKGVAVTLVDWADV 392

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 393 TRWKLIDKALNLELSE 408


>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3894-4]
          Length = 397

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
 gi|160358658|sp|A6QRQ7|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
 gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
          Length = 485

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 193/379 (50%), Gaps = 10/379 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 59  KSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 118

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 119 QALMNKPQ------SLFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVSQAI 172

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 173 SLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPR 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V 
Sbjct: 233 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIYLVY 292

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  ++AIVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 293 LLNEYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRSRSRDI 352

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L S+ +  +HR GRT RAG+ G +  ++ Q       
Sbjct: 353 LVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWL 412

Query: 358 RLFREANVSVVWEPAPSVE 376
           R+       +        E
Sbjct: 413 RIENALGKKLDEYKVEKEE 431


>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1162

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 10/371 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + + G+ +LTS+Q   +   +  +DV+  A+TGSGKT AF + +   +  +    + 
Sbjct: 532 LDVVHKLGWESLTSIQAQAIPTIMSGRDVIGVAKTGSGKTGAFLVPMFRHIKDQRP-LAS 590

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+++ +APTRELA Q+ ++ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 591 TDGPISMILAPTRELATQIHKDCKPFLRALGLRAVCAYGGAPIKDQIAELKRGAEIIVCT 650

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            GRL D     +G+ LN+  +  VVLDE D M D+GF   +  I+ S    R+ ++FSAT
Sbjct: 651 AGRLIDLLAANQGRVLNLRRITYVVLDEGDRMFDMGFGPQVVKIMASIRPDRQTVLFSAT 710

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------IVNILRYH 242
              ++  LA+    D V + +  ++    +I     +     +          +     +
Sbjct: 711 FPKSMEALARKTLNDPVEITVGGKSVVAREITQIVEVRNNDQKFFRLLELLGNLYEDDAN 770

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F   + +     K L    +  +++ G   Q +R + +Q  + G   + +AT 
Sbjct: 771 EDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQIDRDSTIQEFKAGVFPILVATS 830

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +   R A  + + 
Sbjct: 831 VAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQDRYALDIAKA 890

Query: 363 ANVSVVWEPAP 373
              S    P P
Sbjct: 891 LKQSGQEVPEP 901


>gi|148702333|gb|EDL34280.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_b [Mus
           musculus]
          Length = 1012

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 343 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 402

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 403 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 461

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 462 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 521

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 522 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 581

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 582 GSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 641

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 642 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 698


>gi|153947047|ref|YP_001401319.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|170024671|ref|YP_001721176.1| ATP-dependent RNA helicase DbpA [Yersinia pseudotuberculosis YPIII]
 gi|152958542|gb|ABS46003.1| ATP-independent RNA helicase DbpA [Yersinia pseudotuberculosis IP
           31758]
 gi|169751205|gb|ACA68723.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 460

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+  +      +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPSGIEQISARVQRQPL-NVEVGDTDEEPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELVI+ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R    +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSTNIMLEPEMVTLCIDGGRKAKIR 399



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
 gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 399

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 192/378 (50%), Gaps = 10/378 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++       E L   GY + + +Q   + P L+  D L  +QTG+GKT AF + +  
Sbjct: 18  TFADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMPVLE 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  + +       P AL + PTREL+ QV  E + +   + + +AV +GG  +  + + 
Sbjct: 78  LLKEQQEE------PQALVLCPTRELSEQVAVEAQKISRFSKLEIAVVVGGRPLKAQMQK 131

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  +VVGTPGR+ D  + K L++ +++  VLDEAD MLD+GFR D+EFIL   PK+R
Sbjct: 132 IERGVDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRMLDIGFRPDMEFILKQCPKER 191

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+ SAT+   +  LA  + KD VR++I  +N     ++     V    +   ++ +L 
Sbjct: 192 QTLLLSATLPSEVERLANRFMKDPVRIDIEPQNVTADRVEQFYCTVDEHRKLQLLIKLLV 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K AIVFC T+    +        L  V  L G+L Q +R   ++  R G+ R+ IA
Sbjct: 252 QEKPKQAIVFCRTKRKADQLYNKFQTRLDGVETLHGDLPQSKRDRVMKQFRAGKVRMLIA 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAER 358
           TD+  RGID+  +  +I+ ++  + ++ +HR GR GR  +   G +   + Q       +
Sbjct: 312 TDIVGRGIDVGGISHIINYDIPEHSDDYVHRIGRAGRLSSEFSGRAFTFVTQGQGNELTK 371

Query: 359 LFREANVSVVWEPAPSVE 376
           +    N  +       +E
Sbjct: 372 IELLVNKLIPEYKLDGLE 389


>gi|307203840|gb|EFN82776.1| ATP-dependent RNA helicase abstrakt [Harpegnathos saltator]
          Length = 624

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+     + I   L ++G +  T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 182 LKSFKEMKFHRGILYGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPI 241

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L +     F     P  L I P+RELA Q    +              +   + IG
Sbjct: 242 IEFCLEQELDMPFIKKEGPYGLIICPSRELAKQTYDIIRHYTNSLRQADCPEIRSCLAIG 301

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +  G HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+ 
Sbjct: 302 GVPVSESLVIINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVR 361

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 362 TIFSFFRGQRQTLLFSATMPKRIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEA 421

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G + Q+ERS +++  
Sbjct: 422 KIVYLLECLQKTAPP-VLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAF 480

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R GR  V +ATDVA++G+D  D++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 481 RGGRKDVLVATDVASKGLDFADVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 540

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 541 ANDESVLLDLKHLLMEAKQKVPP 563


>gi|292486656|ref|YP_003529526.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
 gi|291552073|emb|CBA19110.1| putative ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
          Length = 430

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  APEGRQVNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAASQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNLTAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|291240646|ref|XP_002740231.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked-like
           [Saccoglossus kowalevskii]
          Length = 694

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 15/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ ++I   +    Y   T VQ+  L     ++D++  AQTGSGKT AF L + S +   
Sbjct: 236 DLGEIIQSNIKNSTYARPTPVQKYALPIIRLKRDLMACAQTGSGKTAAFLLPILSQIYEN 295

Query: 66  NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                P S        PL L +APTRELA Q+  E      ++ V   V  GG  V  + 
Sbjct: 296 GPGKIPESRYARRKHFPLGLVLAPTRELASQIYDEARKFSYRSHVRPCVVYGGADVGGQM 355

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L  G H++V TPGRL D +    + +  +K VVLDEAD MLD+GF   I  I++    
Sbjct: 356 RELDRGCHLLVATPGRLVDMMERGKIGLDQIKWVVLDEADRMLDMGFEPQIRRIVEQDTM 415

Query: 179 K----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R+MLMFSAT    I  LA+++  + + + +        +I  + V V  +D+ + 
Sbjct: 416 PKTGERQMLMFSATFPKEIQILARDFLDNYIFLAVGRVGSTSVNITQKVVWVDENDKRSF 475

Query: 235 IVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           ++++L   G+ +  +VF  T+         L     +  ++ G+ SQ+ER  AL+  R G
Sbjct: 476 LLDLLSATGSDSLTLVFVETKKGADSLEDFLYRDGHRATSIHGDRSQREREEALRSFRTG 535

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
           +  + +AT VAARG+D+P+++ VI+ ++ S+ E  +HR GRTGR G  G++        +
Sbjct: 536 QTPILVATAVAARGLDIPNVKHVINFDMPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNR 595

Query: 351 NMQRRAERLFREANVSVV 368
           N+ R    L  E    V 
Sbjct: 596 NVVRDLLELIMETKQEVP 613


>gi|288799847|ref|ZP_06405306.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333095|gb|EFC71574.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 445

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 188/449 (41%), Gaps = 10/449 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             +   T +QEA +   L +KD+L  AQTG+GKT A+ L + S L        P      
Sbjct: 1   MRFDECTPIQEACIPAILNKKDILGVAQTGTGKTAAYLLPVLSLLDNGG---YPKDKINC 57

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG----AHIVVGTPG 133
           + ++PTRELA Q+ + ++        V +V + G +               A +++ TPG
Sbjct: 58  IIMSPTRELAQQIDQAMQGFSYYLQEVSSVAVYGGNDGNRYDQEIKSLKLGADVIIATPG 117

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R   H+    ++ S +   +LDEAD MLD+GF DDI  I    P   + +MFSAT+ P I
Sbjct: 118 RFISHLSLGNIDTSGVSFFILDEADRMLDMGFYDDIMTIAKELPPHCQNIMFSATMPPKI 177

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLA+            + ++    I   A +     +   + ++      +  I+F   
Sbjct: 178 ETLARTI-LKNPETIKLAVSKPAEKIKQSAYVCYEPQKLKIVTSLFNADNLQRVIIFSGK 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V    K L        A+  +LSQ ER   +   + G+  V +ATD+ +RGID+ D+
Sbjct: 237 KDKVKDINKALLSKKINSGAMHSDLSQAERDEVMFKFKAGQIDVLVATDIVSRGIDIDDI 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
            +VI+ ++  + E+ +HR GRT RA R G ++ ++        +++ +    ++   P P
Sbjct: 297 RMVINYDVPHDVEDYIHRIGRTARADRDGKAITLVSDEDMFYFQQIEQFLEKTIDKTPNP 356

Query: 374 SV--EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
               E    +  Q+  +           +         +   ++        H +   + 
Sbjct: 357 DNIGEGPEYKKVQKFARKKGVKSRNSSGKASFKQRHYKETKNQQHDKNATNTHHSKKKSN 416

Query: 432 EEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           E   P       +R    + A +     +
Sbjct: 417 ENKRPKGSHKPVNRHNKLTEASENTPKKQ 445


>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 468

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 182/378 (48%), Gaps = 7/378 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +   + + EA++   Y  +T VQ   +   L  +D+ V+++TGSGKT+A+ L L   
Sbjct: 3   FAELTMHKRLKEAMAHLDYTEMTEVQAQTIPYALIGRDLAVASKTGSGKTLAYLLPLMHR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL    R      P AL +APTRELA QV  +L +L A T V  ++ +GG + + + + L
Sbjct: 63  LLT--SRALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    I+V TPGRL +H+  +      ++ +VLDEAD MLDLGF D ++ I  ++  + R
Sbjct: 121 RKTPEILVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLR 180

Query: 182 MLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                  +              +                  +   +   L  +   + ++
Sbjct: 181 QTWLFSATLNNQSVEMLSGYILKAPQSISIGEMHAIHADINEVFHLCDHLDHKQALLKHL 240

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     + AIVF +TR    R  K  +E     +ALSG++ Q +R+  +     G A+V 
Sbjct: 241 LSQPDYQQAIVFLATREDTERLAKQYSELNIPALALSGDMKQAQRNQVIDQFSRGHAKVL 300

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
             TDVAARG+DL  + LV++ ++   PE  +HR GRTGRAG +G +V +I        + 
Sbjct: 301 FTTDVAARGLDLLHVSLVVNFDMPKLPEEYIHRIGRTGRAGNQGNAVSLISPKDWVSFQG 360

Query: 359 LFREANVSVVWEPAPSVE 376
           L       V +   P +E
Sbjct: 361 LMALQRREVTFTVIPGLE 378


>gi|22126413|ref|NP_669836.1| ATP-dependent RNA helicase DbpA [Yersinia pestis KIM 10]
 gi|45441434|ref|NP_992973.1| ATP-dependent RNA helicase DbpA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108807144|ref|YP_651060.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Antiqua]
 gi|108812508|ref|YP_648275.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Nepal516]
 gi|145598635|ref|YP_001162711.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Pestoides F]
 gi|149366275|ref|ZP_01888310.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162421745|ref|YP_001606136.1| ATP-dependent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165928002|ref|ZP_02223834.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938672|ref|ZP_02227227.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010820|ref|ZP_02231718.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210580|ref|ZP_02236615.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402150|ref|ZP_02307625.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420322|ref|ZP_02312075.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425805|ref|ZP_02317558.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467438|ref|ZP_02332142.1| ATP-independent RNA helicase DbpA [Yersinia pestis FV-1]
 gi|218928898|ref|YP_002346773.1| ATP-dependent RNA helicase DbpA [Yersinia pestis CO92]
 gi|229896216|ref|ZP_04511386.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229897150|ref|ZP_04512306.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229897877|ref|ZP_04513028.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902891|ref|ZP_04518008.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|270486675|ref|ZP_06203749.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294504053|ref|YP_003568115.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|21959402|gb|AAM86087.1|AE013856_1 ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|45436295|gb|AAS61850.1| ATP-dependent RNA helicase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776156|gb|ABG18675.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|108779057|gb|ABG13115.1| ATP-dependent RNA helicase [Yersinia pestis Antiqua]
 gi|115347509|emb|CAL20417.1| ATP-dependent RNA helicase [Yersinia pestis CO92]
 gi|145210331|gb|ABP39738.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides F]
 gi|149292688|gb|EDM42762.1| ATP-dependent RNA helicase [Yersinia pestis CA88-4125]
 gi|162354560|gb|ABX88508.1| ATP-independent RNA helicase DbpA [Yersinia pestis Angola]
 gi|165913286|gb|EDR31908.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920059|gb|EDR37360.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990164|gb|EDR42465.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166207760|gb|EDR52240.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962017|gb|EDR58038.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048425|gb|EDR59833.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055204|gb|EDR65001.1| ATP-independent RNA helicase DbpA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680338|gb|EEO76437.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229688918|gb|EEO80983.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693487|gb|EEO83536.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701139|gb|EEO89168.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|262361760|gb|ACY58481.1| ATP-dependent RNA helicase [Yersinia pestis D106004]
 gi|262366103|gb|ACY62660.1| ATP-dependent RNA helicase [Yersinia pestis D182038]
 gi|270335179|gb|EFA45956.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294354512|gb|ADE64853.1| ATP-dependent RNA helicase [Yersinia pestis Z176003]
 gi|320015493|gb|ADV99064.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 460

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A+L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------FVTQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDELKTLVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+  +      +  +   I+          R   ++++L ++   
Sbjct: 185 SATYPSGIEQISARVQRQPL-NVEVGDTDEEPAIEQVFFETTREKRLPLLISVLSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DLELVI+ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 304 RGLDIKDLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQEMVRAHTIEDYLQI 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W PA  V     R    +L+  +    I G  K  + 
Sbjct: 364 KLKWTPAEQV----SRSTNIMLEPEMVTLCIDGGRKAKIR 399



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 382 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRAL 441

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 442 QQLQQGK 448


>gi|242808610|ref|XP_002485202.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218715827|gb|EED15249.1| ATP dependent RNA helicase (Dbp1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 680

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 190/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 188 VNTFTNPPLDDHLIANIALARYTTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI 247

Query: 59  ASTLLAEND-------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S                         + P +L +APTREL  Q+  E      ++ V  
Sbjct: 248 LSQAFQTGPSAAPAPAAGGNFYGRQRKAYPTSLILAPTRELVSQIYDEARKFAYRSWVRP 307

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
            V  GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF
Sbjct: 308 CVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGF 367

Query: 166 RDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I           R+ LMFSAT    I  LA+++ KD V +++        +I  
Sbjct: 368 EPQIRRIVEGEDMPQVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQ 427

Query: 222 RAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R   V   D+ + +++IL  HG     ++F  T+         L    F   A+ G+ +Q
Sbjct: 428 RIEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADSLCDFLINQNFPATAIHGDRTQ 487

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL+M R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG 
Sbjct: 488 RERERALEMFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 547

Query: 341 KGMSVFVIPQNMQ---RRAERLFREANVSVV 368
            G++     +  +   R    L +EA+  V 
Sbjct: 548 TGIATAFFNRGNRGVVRDLIDLLKEAHQDVP 578


>gi|66816623|ref|XP_642321.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
 gi|74997195|sp|Q54Y81|DDX23_DICDI RecName: Full=ATP-dependent RNA helicase ddx23; AltName:
           Full=ATP-dependent RNA helicase helB2; AltName:
           Full=DEAD box protein 23
 gi|60470121|gb|EAL68101.1| hypothetical protein DDB_G0277857 [Dictyostelium discoideum AX4]
          Length = 834

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 181/402 (45%), Gaps = 29/402 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+P+ I EA+ + GY   + +Q   +   L  +D+L  A+TGSGKT AF + +   +  
Sbjct: 418 SNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISK 477

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    + + A  P AL +APTREL  Q+ +E        G  V   +GG S+  +   + 
Sbjct: 478 QPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVS 537

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------------- 169
            G  I++ TPGRL D +  + L ++    +VLDEAD M+DLGF   +             
Sbjct: 538 KGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLK 597

Query: 170 --------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                   +   D S   R  ++FSAT+ P +  L+K Y +    + I    +    I  
Sbjct: 598 SEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQ 657

Query: 222 RAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V   + +   +  +++       I+F + +        VL E       L    SQ
Sbjct: 658 TVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQ 717

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL+  +  +  V IAT VA+RGI +  +  VI+ ++  N E+  HR GRTGRAG 
Sbjct: 718 EQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGS 777

Query: 341 KGMSVFVIPQ---NMQRRAERLFREAN--VSVVWEPAPSVEA 377
            G++   I      +    +++    N  V +     PS + 
Sbjct: 778 AGLASSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQQ 819


>gi|227833123|ref|YP_002834830.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262182386|ref|ZP_06041807.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454139|gb|ACP32892.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 430

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 183/368 (49%), Gaps = 5/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ +   L ++G      +QEA +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MSTFADLGLPRDVVRVLDKQGITTPFPIQEAAIPDALSGKDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S L A     S  + P  L +APTRELA Q+ + LE   A  G+ V   +GGV+++   
Sbjct: 61  LSRLAASG--VSRPAHPRGLVLAPTRELATQIQQRLEEPAAALGLRVLAVVGGVNINNHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L   H+    LDEAD+M D+GF   +  +L  +P+
Sbjct: 119 RSLARPVDLLVATPGRAQDLIDQGKLFFDHVAIAALDEADQMADMGFLPQVRKLLKLTPE 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   +  L + +  + V  + A        +++  + +   +  N +V  
Sbjct: 179 EGQRLLFSATLDGEVNKLVEQFMHEPVTHSTAPVEAAVDTMEHHLIFIGTREARNDVVLR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     K  I+F  T+  V R  K L       + L G+  Q  R+ A++   DG   V 
Sbjct: 239 LGARKGK-TIMFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGSRTKAIEGFADGSVPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHRSGRT R G  G  V ++    +    +
Sbjct: 298 VATDIAARGIDIADVSLVVHVDPPAEHKAYLHRSGRTARGGESGTVVTLVTDEQRDEVAK 357

Query: 359 LFREANVS 366
           L  +A V 
Sbjct: 358 LIAKAGVK 365


>gi|289825492|ref|ZP_06544699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 415

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|82705769|ref|XP_727104.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482794|gb|EAA18669.1| eukaryotic initiation factor 4a-3 [Plasmodium yoelii yoelii]
          Length = 390

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+I   + +   +   G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 17  TSFESIGIDEGLLRGIYAYGFEKPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          S    + ++PTRELA Q  +    L     V V  CIGG  +  + +
Sbjct: 77  NCVNRN------ISETQVIILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKMSEDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  + V++ +  +      I      +     +   + ++
Sbjct: 191 TQIVLSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFVSIEKEQWKYETLADL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VFC+T+  V    K + E  F V  +   +SQ ER + +   R  + RV 
Sbjct: 251 YESLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+  RG+D+ ++ LV++ +L ++ E+ +HR GR+GR GRKG+++  +  +  +    
Sbjct: 311 ISTDIWGRGLDVHEVSLVVNYDLPNSRESYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 370

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 371 IEQFYSTQIDEMPM 384


>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
          Length = 780

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/464 (24%), Positives = 213/464 (45%), Gaps = 17/464 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + +   LL  
Sbjct: 259 SLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKTGAFFVPILERLLFR 318

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +         + + PTRELA+Q       L   T +  ++ +GG+S+  +  +L+   
Sbjct: 319 PKKIP---TTRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVGGLSLKAQEVELRLRP 375

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I+V TPGR  DH+R     N+  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 376 DIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 435

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + S+ +  + +              R   +  + + 
Sbjct: 436 FSATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPGREDKRMGYLAYLCKT 495

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   +          L G ++Q +R ++++  RDG+    +AT
Sbjct: 496 FYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRDGKVSYLLAT 555

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  ++ VI+ E   + E  +HR GRT RAGRKG +V +  +  ++  +   +
Sbjct: 556 DLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVK 615

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                       +   I   DA ++       + I G E ++ +++  + +  ++A   +
Sbjct: 616 AGKAQGAKI---TSRIIAPADADKL------QEEIDGMEDEIDEIMQEEKEERQLAQAEM 666

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           ++ + G    E    +     R  F  +    K     +D   G
Sbjct: 667 QV-KKGENLIEHEAEIKSRPKRTWFETEHDKKKAKQAGKDELNG 709


>gi|15218071|ref|NP_173516.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|108861895|sp|Q8H0U8|RH42_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 42
 gi|4836896|gb|AAD30599.1|AC007369_9 Similar to RNA helicases [Arabidopsis thaliana]
 gi|332191919|gb|AEE30040.1| DEAD-box ATP-dependent RNA helicase 42 [Arabidopsis thaliana]
          Length = 1166

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 182/367 (49%), Gaps = 7/367 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + + +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 598

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G+      GG  V ++  +L+ G  IVV 
Sbjct: 599 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVC 658

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +   +R+ ++FSA
Sbjct: 659 TPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSA 718

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   SDR   ++ +L     K  
Sbjct: 719 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWSEKGK 778

Query: 248 I-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           I VF  ++       + + +  +  ++L G   Q +R + +   ++    + IAT VAAR
Sbjct: 779 ILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAAR 838

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S
Sbjct: 839 GLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS 898

Query: 367 VVWEPAP 373
              +P P
Sbjct: 899 --EQPVP 903


>gi|300716861|ref|YP_003741664.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062697|emb|CAX59817.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 459

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 131/409 (32%), Positives = 201/409 (49%), Gaps = 15/409 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    + L+E GY  +T VQ A L   L  KDV   A+TGSGKT AFGL 
Sbjct: 1   MTSFATLTALPASQIDNLNELGYHTMTPVQAAALPAILEGKDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   +              +L + PTRELA QV +EL  L      +  + + G      
Sbjct: 61  VLHRIDVTQ------FVTQSLVLCPTRELADQVAKELRRLARFAANIKILTLCGGQPMGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DIE I+   
Sbjct: 115 QRDSLVHAPHIVVGTPGRILDHLKRETLKLDQIGTLVLDEADRMLEMGFREDIEEIIKYC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    I  +++N  +                ID R       ++  A++
Sbjct: 175 PASRQTLLFSATWPQDIARISQNI-QREPVAVETDVVSDLPTIDQRFYEAGAREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L       +AL G+L Q++R   L    +G  R
Sbjct: 234 GLLSDEKPSSCVVFCNTKRECDDVAYALDSAKISALALHGDLEQRDRDQVLIQFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG +G ++  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKSLAMVVNYQLSFDPEVHVHRIGRTARAGAEGCAISFVAPDEMVRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     + + W     ++++    A + L   +   S+ G  K  + 
Sbjct: 354 HALEDFLQMKLSWHKVSELKSV----AAQPLLAEMATLSLDGGRKAKIR 398



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
             +  SL  G K K     ++  L   +G++   IG I + P   +V +  D     R+ 
Sbjct: 383 EMATLSLDGGRKAKIRPGDILGALTGDAGLSSDVIGKIDIAPTQAYVAIRQDTA---RQA 439

Query: 525 VKLDKGIQLK 534
           +K  + +++K
Sbjct: 440 MKQLQQVKIK 449


>gi|194871760|ref|XP_001972900.1| GG15782 [Drosophila erecta]
 gi|190654683|gb|EDV51926.1| GG15782 [Drosophila erecta]
          Length = 592

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 168/435 (38%), Gaps = 23/435 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K F+ +P++    LS R +   T +Q   L   L+ + ++  A TGSGKT+AF   + + 
Sbjct: 121 KDFKMLPRLQLNLLS-RNFDRPTPIQMQALPVLLQGRALMACAPTGSGKTLAFLTPIING 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R    S   AL +APTRELA Q+ RE   L  +TG+            ++    
Sbjct: 180 L-----RAHRTSGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAE 234

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               + ++ +       +  +   +  L  V     DE   L       F          
Sbjct: 235 CKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAA 294

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDN 233
               +  ++    T      K A+R              +   +       + +   +  
Sbjct: 295 CSHPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLV 354

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+ +++R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G
Sbjct: 355 AMRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREG 414

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM- 352
              V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q+  
Sbjct: 415 SIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQDDT 474

Query: 353 --QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
              R    + + +  SV       ++ +R+ +A+   + PL  + I    +        K
Sbjct: 475 SNLRSIALIIKNSGGSVPEYML-QMKKVRKSEARMRAKKPLDREDISTKIRPE-----TK 528

Query: 411 HDPEKIAAGFLRIHR 425
            D    +A   ++ R
Sbjct: 529 SDKSHKSAKLNKVER 543


>gi|149038677|gb|EDL92966.1| rCG22008, isoform CRA_c [Rattus norvegicus]
          Length = 638

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 137/582 (23%), Positives = 238/582 (40%), Gaps = 37/582 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 40  FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 99

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 100 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 158 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 218 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 277

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 278 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 336

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 337 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 396

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 397 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAIGHFKQSAEKL 453

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 454 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSVEMPNISYAWKELKE 511

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 512 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIKEKWHDSRRW 555

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           QL     E+P+  G        +  +DG+   F+  +G S+N
Sbjct: 556 QLTVAT-EQPELEGPPEGYRGGRGQRDGSRGSFRGQRGGSRN 596


>gi|145240499|ref|XP_001392896.1| ATP-dependent RNA helicase dbp4 [Aspergillus niger CBS 513.88]
 gi|134034071|sp|A2QS00|DBP4_ASPNC RecName: Full=ATP-dependent RNA helicase dbp4
 gi|134077418|emb|CAK45672.1| unnamed protein product [Aspergillus niger]
          Length = 802

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 109/462 (23%), Positives = 198/462 (42%), Gaps = 11/462 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     L+   Y  LT +Q   ++  L+ +D+L +A+TGSGKT+AF + +
Sbjct: 46  IEQFTDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLIPI 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++S      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 106 LENLY--RKQWSEHDGLGALVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLREEQ 163

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +       +L+ +VLDEAD +LD+GF+  ++ I+   PK
Sbjct: 164 ERLGRMNILVCTPGRMLQHLDQTSFFETHNLQMLVLDEADRILDMGFQKTVDAIIGHLPK 223

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  ++ LA+   +D   V +     +   S +    V+  L  + + + 
Sbjct: 224 ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQKLDVLW 283

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     IVF S+   V    +        V  +     Q++             +
Sbjct: 284 SFIRSNLKSKTIVFLSSGKQVRFVYESFRHMQPGVPLMHLHGRQKQGGRLDITTKFSSAQ 343

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + ++
Sbjct: 344 HAVLFATDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEK 403

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +   +  V V      + +   I+++      +DP      Q         +  + D
Sbjct: 404 GMLKRLEQKKVQVERINVKANKQQSIKDQLQNMCFKDPELKYLGQKAFISYAKSVYVQKD 463

Query: 413 PEKIAAGFLRI-HRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
            E      L++   AG         +  + G D     +   
Sbjct: 464 KEIFNIKELKLDEFAGSLGLPGAPRIKFIKGDDTKERKNAPR 505


>gi|332978229|gb|EGK14960.1| ATP-dependent RNA helicase RhlE [Psychrobacter sp. 1501(2011)]
          Length = 383

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + + +++ E G+  LT +Q  IL   L  +D +  AQTG+GKT  F + +  
Sbjct: 6   TFDDLALSESVLKSVKELGFTRLTPIQAKILPHTLAGQDAIGQAQTGTGKTATFLITIIE 65

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            LL      D       P A+ +APTRELA Q+  +   L   T +     +GGV   ++
Sbjct: 66  ALLKRPFAADEMRYLGEPRAVILAPTRELANQIFEDAIGLTQHTDLHSVCIMGGVDYEKQ 125

Query: 118 RRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                     I++ TPGRL D I    + +  ++A VLDEAD MLD+GF  DI+ ++   
Sbjct: 126 TAALDHAFTDILIATPGRLIDLIHKGHVFLDRVEAFVLDEADRMLDMGFIPDIKRLMRYM 185

Query: 177 PKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P         FSAT +  +  LA  +  + V V I  E++    ++    L+  SD+  A
Sbjct: 186 PANTDRQSLLFSATFNQDVMNLAYQWLSNPVFVEIKPEHKTSDLVEQHFYLLTESDKFKA 245

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  IL        IVF + +  V R    L+      V LSG++ Q +R   L   ++G 
Sbjct: 246 LNRILMAEDTHKVIVFANRKDQVKRLYNRLSAEHNV-VMLSGDVDQSKRERYLDNFKNGD 304

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A+V +ATDVA RGI + D+  V++  L   P++ +HR GRTGRAG++G+S+  + ++   
Sbjct: 305 AKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQQGVSISFVSEDDAF 364

Query: 355 RAERLFREANVSVVWEPA 372
               +    +  +  E  
Sbjct: 365 NLPAIEAHLDTKLKLEQL 382


>gi|325088110|gb|EGC41420.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H88]
          Length = 635

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/470 (24%), Positives = 210/470 (44%), Gaps = 14/470 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 162 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 219

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 220 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAGKLTKGV 279

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 280 NLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDRQTM 339

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 340 LFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 399

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +      I 
Sbjct: 400 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQGTLIC 459

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 460 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 519

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            +EA V VV    P+   +  +   ++++    +L+    D  +      A H    +  
Sbjct: 520 -KEARVPVVEFDFPAKRIVNVQSQLEKLIGQNYYLNKSAKDGYRSYLQAYASHSLRSVFD 578

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                 +++ ++          ++L +   R +        G   +   K
Sbjct: 579 VHKLDLVKVAKSFGFPTPPRVDITLAASMSRDKKQQGRRNYGSQPKHAPK 628


>gi|121945880|dbj|BAF44659.1| RNA helicase [Neobenedenia girellae]
          Length = 670

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 16/379 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST---- 61
           ++ ++I + +    Y   T VQ+  +      +D++  AQTGSGKT AF + + +     
Sbjct: 195 DLHKIIRDNVELARYSRPTPVQKYAVPIIAAGRDLMACAQTGSGKTAAFLIPMLNNMFVH 254

Query: 62  -----LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                L   N+    A  P  L IAPTRELA Q+  E +    ++ V   V  GG ++  
Sbjct: 255 GPADSLDRCNEEDRRAQFPTGLVIAPTRELASQIYDEAKKFSYRSHVRPCVVYGGAAIKG 314

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  DL  G +++  TPGRL D I    L +   + +VLDEAD MLD+GF   I  I+   
Sbjct: 315 QLSDLSRGCNVIFATPGRLIDIIDRGKLKLDCCRFLVLDEADRMLDMGFEPQIREIIQRY 374

Query: 177 PKKRRML---MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                     MFSAT  P I  LAK++ K  + +++        +I    V V   D+ N
Sbjct: 375 MPNGDNRQTLMFSATFPPQIQNLAKDFLKSYIFLSVGRVGSTSENITQSLVWVEEVDKRN 434

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           A+++ + +    N  +VF  T+       + L    F V ++ G+ +Q ER  AL+  R 
Sbjct: 435 ALLDFIDFTKEDNLTLVFVETKRGADSLEEFLYNREFSVSSIHGDRTQDERERALKNFRS 494

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---P 349
           G+  + +AT VAARG+D+P+++ VI+ +L ++ +  +HR GRTGR G  G +        
Sbjct: 495 GKTPIMVATAVAARGLDIPNVKHVINYDLPNDIDEYVHRIGRTGRVGNLGKATSFFNDKN 554

Query: 350 QNMQRRAERLFREANVSVV 368
           +N+ R    L  EAN  V 
Sbjct: 555 KNLARDLVELLEEANQEVP 573


>gi|67423408|dbj|BAD99523.1| VASA RNA helicase [Artemia franciscana]
          Length = 726

 Score =  184 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 182/360 (50%), Gaps = 9/360 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   +   I + + + GY   T VQ+  +   ++++D++  AQTGSGKT A+ + +
Sbjct: 303 IDSFDAAGLRPKILDNIKKSGYTQPTPVQKWAIPVIMKKRDLMACAQTGSGKTGAYLIPI 362

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+ E      +     P A+ + PTRELA+Q+ +E       T +   V  GGV+  
Sbjct: 363 INRLIEEGCAASSYDETQTPEAVVMCPTRELAIQIFKEAVKFSYDTIIKPVVVYGGVAPR 422

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   +++G +I+VGTPGRL D +     N S  K +VLDEAD MLD+GF  +++ ++  
Sbjct: 423 YQSDKVKSGCNILVGTPGRLIDFMNRGVFNFSACKFLVLDEADRMLDMGFMGEVKKVVYH 482

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R  LMFSAT    +  LA  + ++ + V + +      D+    + +    R
Sbjct: 483 GTMPVKVERNTLMFSATFPNEVQELAAEFLENYIFVTVGTVGGACMDVLQEVIEIDAKSR 542

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + ++ IL        +VF S++ +      +L+       ++ G+  Q +R   L+  +
Sbjct: 543 IDRLLEILTEKEGVKTLVFASSKKTADFLAALLSTKNLPATSIHGDRFQYQREEVLRDFK 602

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +AT VAARG+D+  + LVI+ EL ++ +  +HR GRTGR G  G ++     +
Sbjct: 603 SGHRNILVATAVAARGLDIKGVGLVINYELPTDIDEYVHRIGRTGRLGNTGHAISFFNPD 662


>gi|322712774|gb|EFZ04347.1| ATP-dependent RNA helicase HAS1 [Metarhizium anisopliae ARSEF 23]
          Length = 581

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 117/481 (24%), Positives = 209/481 (43%), Gaps = 19/481 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+ +   +   +A++E G+  +T++Q   + P L  KDVL +A+TGSGKT+AF +    
Sbjct: 105 MFDQLKLSEKTMKAITEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 164

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     RF P +    + ++PTRELA+Q+      L         + IGG +   E   
Sbjct: 165 IL--SALRFKPRNGTGVIVVSPTRELALQIFGVARELMQHHSQTYGIVIGGANRKAEAEK 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G ++++ TPGRL DH+        +LK++V+DEAD +L++GF D+I  I+       
Sbjct: 223 LSKGVNLLIATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDD 282

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--A 234
           R  M  +            ++       + V+   +      ++   VL     R     
Sbjct: 283 RQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVDGLEQGYVLCDADKRFILLF 342

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              +      K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +  
Sbjct: 343 SFLMRMKEKKKKVIVFFSSCNSVKYYSELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAE 402

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQ 353
             + I TDVAARG+D+P ++ ++  +   N  + +HR GRT R A  KG S+  +  N  
Sbjct: 403 HGILICTDVAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPNEV 462

Query: 354 RRAERLFREANVSVVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                L + A V VV    P+  ++ ++  + ++++    +L     +  K        H
Sbjct: 463 GFLSHL-KTARVPVVEFEFPAKHIKNVQS-NLEKLIGKNYYLQQSAKEAFKSYLHAYGSH 520

Query: 412 DPEKIA----AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               +        +R+ ++   A      ++L     R +   R        +   +G  
Sbjct: 521 SLRSVYDVQKLDLVRVAKSFGFATPPRVDINLGQSMSRNKVQGRRSYGSQPRQPVRQGGR 580

Query: 468 W 468
            
Sbjct: 581 R 581


>gi|67623509|ref|XP_668037.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis TU502]
 gi|54659212|gb|EAL37800.1| eukaryotic initiation factor 4A-3 (eIF4A-3) (eIF-4A-3)
           [Cryptosporidium hominis]
          Length = 395

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 182/373 (48%), Gaps = 8/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   +   +   +   G+   +++Q   + P ++ +D ++ +Q+G+GKT  F +   
Sbjct: 21  NTFEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGAL 80

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                     S  + P+ L ++PTRELA Q  +    +     +    CIGG  +  + +
Sbjct: 81  EIC-----SKSKENVPMVLILSPTRELAEQSEKVCTSIGDYLDIRTHSCIGGKKLKDDIK 135

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              +G  I+ GTPGR+   I    L+   +K +++DEADEM D GF+  +  I    P +
Sbjct: 136 AFNSGVSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPR 195

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNI 238
            + ++ SAT+   I  +A+ + ++ +++ +  E      I      +     +   + ++
Sbjct: 196 IQTVLVSATLPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDL 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +I+FC+T+  V   +K + E+ F V  + G+L Q  R   L+  R+G+ RV 
Sbjct: 256 YDTLTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+  RGID+  + LV++ +L  N E  +HR GR+GR GR G+++ +I +  +     
Sbjct: 316 ITTDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSL 375

Query: 359 LFREANVSVVWEP 371
           L R  ++ +   P
Sbjct: 376 LERFYSIKISKLP 388


>gi|256829773|ref|YP_003158501.1| DEAD/DEAH box helicase domain-containing protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578949|gb|ACU90085.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
           DSM 4028]
          Length = 444

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/356 (31%), Positives = 171/356 (48%), Gaps = 4/356 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q +   + + GYV  T +Q   +   L  KDVL  AQTG+GKT AF L L   ++ +
Sbjct: 7   SFDQRLNVGIRDCGYVTPTPIQIQAIPSVLAGKDVLGLAQTGTGKTAAFALPLLQRMITD 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S       L +APTRELA+Q+      L  +TG+  A   GGV    + +     A
Sbjct: 67  G--ISVRGPVRVLVLAPTRELALQIHETFISLGKQTGIRSAAVFGGVGETPQVKAA-RQA 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V  PGRL D +    +++SH+ A+VLDEAD M D+GF  D+  I+   P KR+ L+F
Sbjct: 124 SVLVACPGRLLDLVNRGLVDLSHVNALVLDEADRMFDMGFLPDLRRIMAKLPAKRQNLLF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  +A         V   S       I +    V+   +   +   L      
Sbjct: 184 SATMPPEIRKIADQVLVQPAVV-QVSNTAPPEKIRHTLYPVSAGQKMGLLEAYLGRTPHD 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       + L +      +L G LSQ  R  AL   R G+ R+ +ATD+AA
Sbjct: 243 CVLIFTRTKHRAKSLARKLEQKGMLATSLQGNLSQNRRQEALDGFRSGKYRIMVATDIAA 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RGID   +  V++ +L    E+  HR GRTGRA + G ++ ++      +   + R
Sbjct: 303 RGIDCVRISHVVNFDLPDTAESYTHRIGRTGRADKSGEAITLVSPEDSAQINAIER 358


>gi|242002440|ref|XP_002435863.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215499199|gb|EEC08693.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 494

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 186/387 (48%), Gaps = 18/387 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  ++ ++I   +    Y   T VQ+  +   L ++D++  AQTGSGKT AF + +
Sbjct: 83  INSFDECSLTEIIRVNIELAHYTCPTPVQKHAIPIILAKRDLMACAQTGSGKTAAFLVPI 142

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +         PLAL ++PTRELA Q+  E      ++ V   V  GG    ++ 
Sbjct: 143 LNQVFEDGPP--KNQYPLALILSPTRELACQIYEEACKFAYRSRVRPCVVYGGADPMQQM 200

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILD 174
           +DL  G H++V TPGRL D +    +++  ++ +VLDEAD MLD+GF   I         
Sbjct: 201 KDLDRGCHLLVATPGRLVDMMERGKVSLELVRYLVLDEADRMLDMGFEPQIRRIVLEDNM 260

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
               +R+ LMFSAT    +  LA+ +  + + + +        +I  + V V   D+ + 
Sbjct: 261 PPVGQRQTLMFSATFPKKVQELARKFLDNYIFLAVGRVGSTSENITQKVVWVEEHDKRSF 320

Query: 235 IVN----------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           +++                    + F  T+         L +  + V ++ G+ SQ+ER 
Sbjct: 321 LLDLLNAAGLRTGSQAALSDSLTLTFVETKKGADSLEHFLMKEGYPVTSIHGDRSQRERE 380

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           +AL   R G   + +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++
Sbjct: 381 DALWSFRKGHTPILVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 440

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEP 371
                +  +  A  L      +    P
Sbjct: 441 TSFFNEKNRNMALDLVELITETKQELP 467


>gi|198424291|ref|XP_002131481.1| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Ciona intestinalis]
          Length = 733

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 191/383 (49%), Gaps = 19/383 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + +++ + L    Y   T VQ+  +     ++D++  AQTGSGKT AF L   S L  +
Sbjct: 261 ELGEIVDDNLESCKYTVPTPVQKYAIPIIQSKRDLMACAQTGSGKTAAFLLPTLSQLYTK 320

Query: 66  ND-----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
                        R      PLAL ++PTRELA Q+  E      ++ V   V  GG  V
Sbjct: 321 GPGESLKATTSHQRGRRKLFPLALVLSPTRELASQIYDEARKFAYRSHVRPCVVYGGADV 380

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + RDL  G HI+V TPGRL D I    + + +++ V+LDEAD MLD+GF   I  I++
Sbjct: 381 GAQMRDLDRGCHILVATPGRLVDFIERGKVGLCYIRFVILDEADRMLDMGFEPQIRRIVE 440

Query: 175 SSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            S        + LMFSAT    I  LA+++  + + + +       ++I  + V V   +
Sbjct: 441 QSDMTHKGERQTLMFSATFPKEIQILARDFLNNYIFLAVGRVGSTSTNITQKVVWVDEEE 500

Query: 231 RDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +   +++++    +K+  ++F  T+       + L    ++  ++ G+ +Q+ER  AL  
Sbjct: 501 KHKFLLDLVNATDSKSLTLIFTETKKGADALDEFLYTRKYKSTSIHGDRTQREREEALLA 560

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G   + +AT VAARG+D+P++  VI+ +L S+ +  +HR GRTGR G  G++     
Sbjct: 561 FRTGEYPILVATAVAARGLDIPNVRHVINFDLPSDVDEYVHRIGRTGRVGNIGLATSFFN 620

Query: 350 Q---NMQRRAERLFREANVSVVW 369
               N+ +    L  EA+  V  
Sbjct: 621 NKNVNIVKDLVDLLIEASQEVPP 643


>gi|297201135|ref|ZP_06918532.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197713661|gb|EDY57695.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 504

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 187/361 (51%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGL L + L  +
Sbjct: 85  DLPERLQAALLAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLPLLARLDGQ 144

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    PLAL + PTRELA QV   L        +  A  +GG+S+ R+   L+ GA
Sbjct: 145 R---AEPRHPLALVLVPTRELAQQVTDALTPYARALRLRAATVVGGMSIGRQASALRAGA 201

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 202 EVLVATPGRLKDLIERGDCSLSQVTMTVLDEADQMTDMGFMPQVTALLDQVRPDGQRMLF 261

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L +NY  D V  ++       + +D+  + V   D+              
Sbjct: 262 SATLDRNIDRLVRNYLHDPVVHSVDPSAGTVTTMDHHLLHVRDDDKHATATE--IAARDG 319

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG+  V +AT+VAA
Sbjct: 320 RVIMFLDTKHAAERLAKHLLSVGVRASALHGGKSQPQRTRTLGQFKDGQVTVLVATNVAA 379

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + D++LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R  +RL  +A V
Sbjct: 380 RGIHVDDVDLVVNFDPPADHKDYLHRGGRTARAGESGTVVTLVLPHQRRSVDRLMSDAGV 439

Query: 366 S 366
           +
Sbjct: 440 T 440


>gi|157123872|ref|XP_001653950.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882852|gb|EAT47077.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 718

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 191/378 (50%), Gaps = 9/378 (2%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E+  P V  + +  +G+   TS+Q    +  +  +D++  A+TGSGKT+A+ L   
Sbjct: 101 MQFGESGFPSVFLDEMGRQGFQEPTSIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 160

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  R      P+AL +APTRELA Q+ +       +  ++     GG S H +  
Sbjct: 161 IHISNQ-PRLLRGDGPIALVLAPTRELAQQIQQVCNDFGRRMSIMNTCIFGGASKHPQAD 219

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      
Sbjct: 220 DLRRGVEIVIATPGRLIDFLESGTTNLRRTTYLVLDEADRMLDMGFEPQIRKIISQIRPD 279

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAI 235
           R++LM+SAT    I  LA+ + ++ +++NI S     N     I           R   +
Sbjct: 280 RQVLMWSATWPKEIRKLAEEFLREYIQINIGSLNLAANENIMQIIECCEEYEKETRLFKL 339

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L   G   +I+F  T+  V + T V+  + ++   + G+ +Q++R   L   R  R+
Sbjct: 340 LTELSQQGDSKSIIFVETKRKVDQITNVIKRNGWRCDGIHGDKTQKDRDYVLNTFRRLRS 399

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S          +
Sbjct: 400 GILVATDVASRGLDVDDVKYVINFDFPNNTEDYIHRIGRTGRSTNKGTSYTFFTPANGAK 459

Query: 356 AERL---FREANVSVVWE 370
           A  L    REAN  V  E
Sbjct: 460 AGDLIGVLREANQFVNPE 477


>gi|90023351|ref|YP_529178.1| putative ATP-dependent RNA helicase [Saccharophagus degradans 2-40]
 gi|89952951|gb|ABD82966.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 436

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/378 (29%), Positives = 197/378 (52%), Gaps = 5/378 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  + Q + +AL +  +   T VQ   +   L  KD++VSA+TGSGKT AF L + 
Sbjct: 1   MEFSELGLHQSLQKALDKLTFTKPTDVQVQTIPAVLAGKDIMVSAKTGSGKTAAFLLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              L +     P ++  AL + PTRELA+Q  +  E     T + V + +GG +   +  
Sbjct: 61  HKFLNDPR---PNTSTRALILLPTRELALQTVKAFEQFAGYTQIKVGLIMGGEAYKHQVA 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++    ++V TPGRL +HI+   ++ S L+ +VLDE+D MLD+GF++++  I     ++
Sbjct: 118 TVRKNPEVLVATPGRLVEHIKNGNVDFSDLEFLVLDESDRMLDMGFQENMLAIAAVCNEE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT+            +D VR+ + S      +    R      S ++  +V +
Sbjct: 178 RQNLLFSATLKHKGIGGITGLLQDPVRIQVDSAKEGHSNITQQRVFADDDSHKEKLVVKL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +    A+  IVFC+TR    + + +L  +      + GE++Q +R   +    DG+ RV 
Sbjct: 238 IAEEDAQRVIVFCNTRLQCQKVSNILRANKLVSEYIHGEVTQSDRKQVMNRFIDGKIRVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D++LVI+   +   +  +HR GRTGR+ + G+++ +I          
Sbjct: 298 VATDVAARGLDIKDVDLVINFSAAFTGDEHVHRVGRTGRSDKTGLAITLISPKEFNPMSS 357

Query: 359 LFREANVSVVWEPAPSVE 376
           + R   + ++      +E
Sbjct: 358 IERYLKIRLIPRKVKGLE 375


>gi|328949667|ref|YP_004367002.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449991|gb|AEB10892.1| DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis
           DSM 14884]
          Length = 517

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 155/491 (31%), Positives = 235/491 (47%), Gaps = 14/491 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   + +AL ERG+  LT VQ A L   L  +DV+  A+TG+GKT+AF L +A
Sbjct: 1   MQFNELSLKPEVQQALRERGFTTLTPVQAATLPHALEGRDVIAQARTGTGKTLAFALPIA 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L       +   AP AL +APTRELA+QV  EL+W        V    GG    ++ +
Sbjct: 61  ERL---EPARAKGRAPRALVLAPTRELALQVAGELDWAAPHL--EVLTVYGGTGYGQQAQ 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VV TPGR  D++R   L+++ ++ VVLDEADEML +GF +D+E +L ++   
Sbjct: 116 ALRRGCDVVVATPGRALDYLRRGVLDLARVEVVVLDEADEMLSMGFEEDVEALLAAAVSA 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+      LA+ + KD    N+  +          A+    + R   + ++L
Sbjct: 176 RQTLVFSATMPSWARRLAERHLKDPFVANLVKDEAVTYREL--AIEAPTATRIAVLSDVL 233

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +GA  AIVF  T+A        LA       A+ G+LSQ  R   +   R G  RV +
Sbjct: 234 HAYGAGRAIVFTRTKAETDALATALAGRRHAAEAVHGDLSQAARERVVARFRKGLVRVLV 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P++ELV+H  L    E   HRSGRTGRAGR G  V +     +R    L
Sbjct: 294 ATDVAARGLDVPEVELVVHYRLPERVEVYQHRSGRTGRAGRTGTVVLLYGPRERRTVADL 353

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKIAA 418
            R           P+   ++      +LQ      ++ +   +++    +A+ D E   +
Sbjct: 354 ERALRRRFERLAPPTPGEVQRAQLAALLQRAAAQPEADRAVWREVARDWVARGDTE---S 410

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDNFKGSSWFSLSVGSK 476
               +      AP + + ++   G        R        G+  +        +SVGS 
Sbjct: 411 LAGLLAMLLGGAPPQRSLLTGEEGWVTLELKGRNLTTARVVGALRHAGAGEVGRVSVGST 470

Query: 477 QKAEARWLMPM 487
                  L P 
Sbjct: 471 AAVAYADLRPA 481


>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
 gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
          Length = 408

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 115/360 (31%), Positives = 187/360 (51%), Gaps = 9/360 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
             +   T VQE  +   L  KD++  AQTG+GKT A+ L + + L   +    P  A  A
Sbjct: 1   MNFDETTPVQELTIPVILEGKDIIACAQTGTGKTAAYVLPVINEL---SKGCHPTDAVNA 57

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRERRDLQNGAHIVVGTPG 133
           + +APTRELA Q+ ++++        V AV + G    ++  +++R L+ GA IV+ TPG
Sbjct: 58  VIMAPTRELAQQIDQQIQGFTYFIPSVSAVAVYGGTDGIAWEQQKRGLEMGADIVIATPG 117

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL  HI+   +++S +   VLDEAD MLD+GF DDI  +    P   + +MFSAT+ P I
Sbjct: 118 RLLSHIKLGTVDLSKVSFFVLDEADRMLDMGFYDDIMQVHKQLPPYCQTIMFSATMPPKI 177

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
            TLAK   KD   V   + +R    I   A +     +   + ++      +  I+F S+
Sbjct: 178 RTLAKTILKDPEEV-KIAISRPPESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSS 236

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +  V      L    F V A+  +L Q +R   ++  + G   + +ATDV ARGID+ D+
Sbjct: 237 KMKVKELASTLKRLKFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDI 296

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +LV++ ++  +PE+ +HR GRT R    +G+++  +  + Q + +R+       V   P 
Sbjct: 297 KLVVNFDIPHDPEDYVHRIGRTARGTNGEGLAITFVSIDEQAQFKRIEDFLEKEVYKIPV 356


>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
 gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
          Length = 397

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|74006736|ref|XP_861449.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 8 [Canis familiaris]
          Length = 663

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|81295381|ref|NP_001032278.1| nucleolar RNA helicase 2 [Rattus norvegicus]
 gi|123780397|sp|Q3B8Q1|DDX21_RAT RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|77748254|gb|AAI05879.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Rattus norvegicus]
 gi|149038676|gb|EDL92965.1| rCG22008, isoform CRA_b [Rattus norvegicus]
          Length = 782

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 137/582 (23%), Positives = 238/582 (40%), Gaps = 37/582 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 184 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 243

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 244 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 301

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 302 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 361

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 362 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 421

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 422 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 480

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 481 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 540

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 541 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAIGHFKQSAEKL 597

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 598 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSVEMPNISYAWKELKE 655

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 656 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIKEKWHDSRRW 699

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
           QL     E+P+  G        +  +DG+   F+  +G S+N
Sbjct: 700 QLTVAT-EQPELEGPPEGYRGGRGQRDGSRGSFRGQRGGSRN 740


>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
 gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
          Length = 397

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  +  + +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIYAEAFHSGRSQAIRAQLLEDFKSAKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|306825593|ref|ZP_07458932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304431954|gb|EFM34931.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 447

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +  
Sbjct: 3   FKKFQ-FKNYIAEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D      +  A+  AP+RELA Q+ +    + A + V V V           + 
Sbjct: 62  QLDETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S P
Sbjct: 116 EKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKIFVVDEADMTLDMGFLETVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  
Sbjct: 176 KDLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L     +V  + G+++ +ER   +  +++     
Sbjct: 236 LTQLMQPYLAMIFVNTKTRADELYAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             ++++D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R ++RA          
Sbjct: 400 LVKKKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|171909846|ref|ZP_02925316.1| DEAD/DEAH box helicase domain protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 377

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 190/376 (50%), Gaps = 8/376 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK F+++   + + + L E G    T++Q+  +   L  + D++  AQTG+GKT AFGL 
Sbjct: 1   MKTFQDLGISEALVQGLEELGITKPTAIQQQTIPHVLAHRGDLIAQAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVH 115
           +   ++    + + A     L +APTRELA Q+G++L          + V    GG  + 
Sbjct: 61  MLERIIPHAAK-AKAGQIDGLIVAPTRELAKQIGKQLFKFTKHVPDKIFVETITGGDDMD 119

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+   HIVVGTPGRL D ++ + LN+S ++ +VLDEADEML LGF+ ++E     
Sbjct: 120 LQISRLRRPTHIVVGTPGRLMDLVQREALNLSKVRYLVLDEADEMLSLGFKKELEQFFQL 179

Query: 176 S--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +   +K   L  +         +    + +A R+ I   +  + DI +R ++   +++ +
Sbjct: 180 TAKSRKNTWLFSATIPEGIQELIEGYMEPEAHRITIDKAHVVNRDITHRYIICDRTEKLD 239

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I   L        ++FC T A      K L    F V  L G+LSQ ER   ++  +  
Sbjct: 240 RISEFLEDRSEDRGVIFCRTIAGSINLAKELGTRNFSVGVLHGDLSQLERDKVMRAFKKE 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           R +  + TDV+ARGID+  L  VIH +L    E   HRSGRTGRAGRKG+S+  I    +
Sbjct: 300 RLQYLVTTDVSARGIDVVGLAFVIHHQLPEQTEYYTHRSGRTGRAGRKGLSLAFIEPKEK 359

Query: 354 RRAERLFREANVSVVW 369
               RL  E  V    
Sbjct: 360 SAITRLENELGVEFSE 375


>gi|110807530|ref|YP_691050.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 5 str. 8401]
 gi|122957085|sp|Q0SYX0|RHLB_SHIF8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|110617078|gb|ABF05745.1| putative ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
          Length = 421

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIENYI 375

Query: 364 NVSVV 368
             S++
Sbjct: 376 GHSIL 380


>gi|330831669|ref|YP_004394621.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
 gi|328806805|gb|AEB52004.1| ATP-dependent RNA helicase rhlB [Aeromonas veronii B565]
          Length = 416

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 193/386 (50%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L  +G+   T +Q   L   +   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 3   LEPEVLAGLESKGFHYCTPIQALSLPLLVEGHDLAGQAQTGTGKTIAFLAATFNYLLTHP 62

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +    + P A+ +APTRELAVQ+  + + + A TG+ + +  GG    ++   L+ G 
Sbjct: 63  LTKPRLVNQPRAIIMAPTRELAVQIYNDADSIAASTGLKLGLAYGGEGYDKQLAVLEQGV 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GT GR+ D+ + K +++S+++ VVLDEAD M DLGF  DI F+    P       +
Sbjct: 123 DILIGTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPPATERLSM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  E      I       +  D+   +++++    
Sbjct: 183 LFSATLSLRVQELAYEHMNHPEHVQVEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEW 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         L     +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 243 PEKAIVFANTKHVCEDVHAWLENDGHRVGLLTGDVPQKKRMKILEDFTKGALDILVATDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +PD+  V + +L  + E+ +HR GRTGRAG+ G S+ +  ++       +    
Sbjct: 303 AARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACEDYAFNLPAIEEYI 362

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           + ++          + + D + +L D
Sbjct: 363 HHAIP---------VSKYDREALLDD 379


>gi|238759816|ref|ZP_04620973.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
 gi|238701959|gb|EEP94519.1| ATP-dependent RNA helicase rhlB [Yersinia aldovae ATCC 35236]
          Length = 428

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQMTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|298529095|ref|ZP_07016498.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510531|gb|EFI34434.1| DEAD/DEAH box helicase domain protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 367

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 180/372 (48%), Gaps = 7/372 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +   I   +   GY N T++QE  +   L+ +DV+  AQTG+GKT AF +    
Sbjct: 3   FTDFE-LDHRIQAGIKACGYKNPTAIQEQAIPVGLQGRDVMGLAQTGTGKTAAFVVPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL           P  L ++PTRELA Q       L  KTG+      GGVS   + + 
Sbjct: 62  RLLQ-----GKRGKPRVLVLSPTRELAEQTHEFFTALGRKTGLRCVSVYGGVSRSGQVQK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +++G  IVV  PGRL D  R + +N+S ++ ++LDE+D MLD+GF  DI  I+   P KR
Sbjct: 117 IRSGVEIVVACPGRLLDLARDRAVNLSQVETLILDESDRMLDMGFMPDIRSIMKMLPPKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TLA     D  RV +    R    I      V    +   ++ +LR
Sbjct: 177 QNMLFSATMPADIRTLADEILDDPARVQVN-HERALDSISQCLYPVKRRPKAEMLIELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R  K L++  F+   L G +SQ  R   ++  + G   + +A
Sbjct: 236 EKQDGATLVFTRTKHMATRIAKRLSQAGFRARDLQGNMSQNNRQRVMKDFKRGSFNILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+  +  V++ ++    E+  HR GRTGRA   G +   +          + 
Sbjct: 296 TDIASRGIDVAGIGHVVNFDMPDTAESYTHRIGRTGRADSCGDASTFVEPKDFGLIRAIE 355

Query: 361 REANVSVVWEPA 372
           R  +  +  +  
Sbjct: 356 RLQSQKLQRKSI 367


>gi|224090572|ref|XP_002187022.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [Taeniopygia
           guttata]
          Length = 492

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 101/353 (28%), Positives = 166/353 (47%), Gaps = 8/353 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +S+ GY   T VQ+  +   L  +D++  AQTGSGKT AF + + + ++ +
Sbjct: 73  NMCDTLTMNISKAGYWKPTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLVPVVAQMMRD 132

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                 F     P  +  APTREL  Q+  E       T +   V  GG       R ++
Sbjct: 133 GVTASAFKEQQEPECIITAPTRELIYQIFLEARKFVYGTCIRPVVIYGGTQTSYLIRQVE 192

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G +I+  TPGRL D I    + + ++K +VLDEAD MLD+GF  D++ ++      ++ 
Sbjct: 193 QGCNILCATPGRLLDIIGRGKIGLHNVKYLVLDEADRMLDMGFGADMKKLVSFPGMPQKE 252

Query: 183 LMFSATI-----SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +                +  + D + V +       SD+    + V+   + + ++ 
Sbjct: 253 KRQTLMFSATFPEEVQRLAYEFLKTDFIFVVVGCAGGACSDVQQNILQVSQYFKRDKLIE 312

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL   G +  +VF  T+         L +      ++ G+  Q+ER  AL   R GR  V
Sbjct: 313 ILHSTGNERTLVFVDTKKKADFIACFLCQENIPATSIHGDREQREREIALGDFRSGRRPV 372

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +AT VAARG+D+ +++ VI+ +L S  E  +HR GRTGR G  G +V    +
Sbjct: 373 LVATSVAARGLDIENVQHVINFDLPSTIEEYVHRIGRTGRCGNTGKAVAFFDK 425


>gi|293334655|ref|NP_001168054.1| hypothetical protein LOC100381784 [Zea mays]
 gi|223945725|gb|ACN26946.1| unknown [Zea mays]
          Length = 672

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/377 (28%), Positives = 177/377 (46%), Gaps = 13/377 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA--L 58
            F++   P  I   + + G+   T +Q       ++ +D++  A+TGSGKT+ + L   +
Sbjct: 158 TFQSTCFPSDILREVLQAGFSAPTPIQAQSWPIAMKGRDIVAVAKTGSGKTLGYLLPGFI 217

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               L  N R      P  L ++PTRELA Q+  E       + +      GG     + 
Sbjct: 218 LLKRLHHNSR----EGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQL 273

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L+ GA +VV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 274 RELERGADVVVATPGRLNDILEMNKVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKQIPP 333

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    +   +  I     ++   ++   + 
Sbjct: 334 RRQTLMYTATWPKEVRKIASDLLNNPVQVNIGNTDQLVANKSITQHVEVIPHMEKSRRLD 393

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR     + I+   +   +           +   A+ G+ SQ ER + L   R GR  
Sbjct: 394 QILRSQDPGSKIIIFCSTKRMCDQLARNLSRQYGASAIHGDKSQAERDSVLNDFRSGRCP 453

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G +         + A
Sbjct: 454 VLVATDVAARGLDIKDIRIVVNYDFPTGVEDYVHRIGRTGRAGATGSAYTFFGDQDSKYA 513

Query: 357 E---RLFREANVSVVWE 370
               ++   AN SV  +
Sbjct: 514 SELVKILEGANQSVPPQ 530


>gi|241172335|ref|XP_002410726.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215494955|gb|EEC04596.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 658

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 178/367 (48%), Gaps = 7/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + +  A+ +  Y   + +Q   +   +  +D++  A+TGSGKT AF   +
Sbjct: 181 VTSFAHLGFDEPMLRAIRKAEYTQPSPIQAQGVPVAMSGRDMIGIAKTGSGKTAAFIWPM 240

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + ++ + +       P+ L +APTRELA Q+  E +      GV    C GG S   + 
Sbjct: 241 LTHIMDQRELVE-GEGPIGLILAPTRELAQQIYLEAKRFGKVYGVGAICCFGGGSKWEQS 299

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ GA IVV TPGR+ D I+ K  N+  +  +VLDEAD M D+GF   +  I D    
Sbjct: 300 KALQEGAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRP 359

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LMFSAT    +  LA++   D V+V        + D+    ++V           +
Sbjct: 360 DRQTLMFSATFKRKVERLARDVLTDPVKVVQGDVGEANEDVTQIVLVVPSVPPTTKWNWL 419

Query: 239 LRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             +          ++F + +A+       L      V  L G++ Q +R+  +   +   
Sbjct: 420 TNHLVEFTSVGSVLIFVTKKANAEELAANLKTKDHNVALLHGDMDQNDRTKVIASFKKKD 479

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+P +  V++ +++ + +   HR GRTGRAG KG++  +I    + 
Sbjct: 480 FPILVATDVAARGLDIPHVRTVVNYDIARDIDTHTHRVGRTGRAGEKGVAYTLITDKEKE 539

Query: 355 RAERLFR 361
            A  L R
Sbjct: 540 FAGHLVR 546


>gi|221133951|ref|ZP_03560256.1| ATP-dependent RNA helicase RhlB [Glaciecola sp. HTCC2999]
          Length = 426

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 114/369 (30%), Positives = 189/369 (51%), Gaps = 7/369 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q I +AL+E  +   T +Q   L P + E D+   AQTG+GKT+AF +A    
Sbjct: 11  FSDLKIHQSIIDALNEANFEYCTPIQALSLPPLIDELDIAGQAQTGTGKTIAFLVATFHY 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL   +       P A+ +APTRELAVQ+  + E L   TG+ + +  GG     +R+ L
Sbjct: 71  LLTHKNS---EKGPKAMIMAPTRELAVQIYNDAELLSKHTGLTLGLIYGGEGYEDQRQTL 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            NG  I++GT GR+ D+ +    +++HL+  VLDEAD M DLGF  DI ++    P    
Sbjct: 128 TNGVDIIIGTTGRILDYYKQGIFSLNHLQVAVLDEADRMFDLGFIKDIRYLFRRMPNATE 187

Query: 182 M--LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
              ++FSAT+S  +  LA  +  +   V I  E +  + +       +  D+   ++ +L
Sbjct: 188 RLSMLFSATLSYRVQELAYEHMNNPTHVQIEPEKKTATRVQEELFYPSDDDKIRLLLTLL 247

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF +T+ S       L     +V  LSG++ Q++R + ++    G+  + +
Sbjct: 248 ENEWPEKAVVFANTKFSCETVAAWLMADGHRVGLLSGDVPQKKRMSIMEGFAKGKLDILV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ +  +  V + +L  + E+ +HR GRTGRAG+ G ++    +        +
Sbjct: 308 ATDVAARGLHIEKVTHVFNFDLPDDAEDYVHRIGRTGRAGKSGHAISFACEKYALNLPEI 367

Query: 360 FREANVSVV 368
                 S+ 
Sbjct: 368 EAYIEHSIP 376


>gi|74006742|ref|XP_861537.1| PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide
           3 isoform 11 [Canis familiaris]
          Length = 646

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 163 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 222

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 342

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 343 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 402

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 403 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 523 GLATSFFNERNINITKDLLDLLVEAKQEVP 552


>gi|300121126|emb|CBK21507.2| unnamed protein product [Blastocystis hominis]
          Length = 518

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 195/365 (53%), Gaps = 9/365 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E IP+ + + +    Y   T VQ+  L      +D++  AQTGSGKT  F   +  ++L 
Sbjct: 141 EYIPKSLLDNIIRCDYRRPTPVQKYGLAIGCIGRDLMACAQTGSGKTAGFLFPIIISMLR 200

Query: 65  ENDRFSP-------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                +P          P  L ++PTRELA+Q+ +E +     TG+  AV  GG  +   
Sbjct: 201 NGPSKAPLPDDYGDRYFPTCLILSPTRELALQIYQESQRFCYCTGIASAVVYGGTPMREV 260

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS-- 175
              L++G  I+VGTPGR+ D I+   L +  +  +VLDEAD MLD+GF   I  I++   
Sbjct: 261 LDSLRSGCDILVGTPGRVKDMIQRGILGLEGITHLVLDEADRMLDMGFEPQIRDIVEQSG 320

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+ R+ LMFSAT    I  LA ++  D V + +        DI+ R + V  +D+D+ +
Sbjct: 321 MPRNRQTLMFSATFPDEIQRLAGDFLIDYVFLAVGRVGGAAQDIEQRVIYVEDADKDSYL 380

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           ++ L   G    ++F  T+       + L    FQ  ++ G+ SQ +R +AL   +  R 
Sbjct: 381 LHELENWGNGRILIFVETKRKADILQRYLTTQHFQAASIHGDRSQADREDALSAFKLNRV 440

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +ATDVAARG+D+PD+ LVI+ +   N E+ +HR GRTGRAG  G+++  I +N +  
Sbjct: 441 QILVATDVAARGLDIPDVSLVINYDTPQNIEDYVHRIGRTGRAGNTGVAISFINENNRPI 500

Query: 356 AERLF 360
           A  L+
Sbjct: 501 ARDLY 505


>gi|224054552|ref|XP_002298317.1| predicted protein [Populus trichocarpa]
 gi|222845575|gb|EEE83122.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 123/495 (24%), Positives = 225/495 (45%), Gaps = 21/495 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+++   +   + + E G+ NLT +Q   + P L  KDVL +A+TGSGKT+AF +   
Sbjct: 88  ESFDSLGLSEATRKTIQEMGFENLTQIQARAIPPLLVGKDVLGAARTGSGKTLAFLIPAV 147

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N  F+P +    + I PTRELA+Q     + L       + + IGG +   E  
Sbjct: 148 ELL--HNVHFAPRNGTGVVVICPTRELAIQTHAVAKDLLKYHSQTLGLVIGGAARRGEAE 205

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++        +LK + +DEAD +L+  F ++++ I+   PK
Sbjct: 206 RLVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLTIDEADRILEANFEEEMKQIIKLLPK 265

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
            R+  +FSAT +  +  LA+   +         + R             +V  + R   +
Sbjct: 266 ARQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYCVVPSAKRFVLL 325

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +  + + +K  +VF S+  SV     +L     +   + G+  QQ+R++          
Sbjct: 326 YSFFKRNLSKKVMVFFSSCNSVKFHADLLRYIQVECFDIHGKQKQQKRTSTFFDFCKAEK 385

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMS-VFVIPQNMQ 353
            + + TDVAARG+D+P ++ ++  +    P+  +HR GRT R  G KG + +F+IP+ +Q
Sbjct: 386 GILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELQ 445

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  + A V V        + A  +   ++++ +  +L+    D  +   +    H 
Sbjct: 446 --FLRYLKAAKVPVKEYEFDQKKLANVQSQLEKLVANNYYLNKSAKDAYRSYMLAYNSHS 503

Query: 413 PEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            + I          +  +   +      +++ S   +FR  +      G +  N  G   
Sbjct: 504 MKDIFNVHRLDLQAVAASFCFSSPPKVNLNMESNASKFRKKTHKGSRNGFNESNPYG--- 560

Query: 469 FSLSVGSKQKAEARW 483
              S G +++  AR+
Sbjct: 561 -RQSDGDEKRQFARY 574


>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
 gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
 gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus Peru-466]
 gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus AN-5034]
 gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
           parahaemolyticus K5030]
          Length = 444

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+    
Sbjct: 66  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRIETYL 365

Query: 364 NVSVVW 369
              + +
Sbjct: 366 QQDLAF 371


>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 448

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 173/366 (47%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+    
Sbjct: 70  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYDAALILGGENFNDQVKALRRYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 190 SATLDHAEVNDIASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRIETYL 369

Query: 364 NVSVVW 369
              + +
Sbjct: 370 QQDLAF 375


>gi|322796780|gb|EFZ19207.1| hypothetical protein SINV_02979 [Solenopsis invicta]
          Length = 605

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/439 (24%), Positives = 203/439 (46%), Gaps = 15/439 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E + +   +A+ + G+ N+T +Q   + P L  +D++ +A+TGSGKT+AF +     +  
Sbjct: 98  EKVCENTLKAIKDMGFTNMTEIQAKSIPPLLEGRDLVGAAKTGSGKTLAFLIPAVELIY- 156

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + ++PTREL++Q    L+ L         + +GG S   E + L  G
Sbjct: 157 -KLKFMPRNGTGVIIMSPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLAKG 215

Query: 125 AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +I+V TPGRL DH          +L+ +V+DEAD +LD+G+ ++++ I++  PK+R+ +
Sbjct: 216 VNIIVATPGRLLDHLQNTPDFLYKNLQCLVIDEADRILDIGYEEELKQIINILPKRRQTM 275

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  +     K         ++++ + +       V      R   +   L+
Sbjct: 276 LFSATQTQKVAMITTLALKKEPIYVGVDDDKEMATVEGLQQGYVACPSEKRFLLLFTFLK 335

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+++ G+  Q +R+       +      + 
Sbjct: 336 KNRKKKIMVFFSSCMSVKFHHELLNYIDLPVMSIHGKQKQTKRTTTFYQFCNASTGTLLC 395

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++         R 
Sbjct: 396 TDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFL-RY 454

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH------D 412
            ++A V V        + A  +   ++++    FL     +  K        H      D
Sbjct: 455 LKQARVPVNEYEFSWNKIADIQLQLEKLISKNYFLHQSAKEAFKNYVRAYDSHHLKQVFD 514

Query: 413 PEKIAAGFLRIHRAGLCAP 431
            E +    +      +  P
Sbjct: 515 IETLDLAKVAKSFGFIVPP 533


>gi|218701307|ref|YP_002408936.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI39]
 gi|300940005|ref|ZP_07154630.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|226739532|sp|B7NTG2|RHLB_ECO7I RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218371293|emb|CAR19126.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|300455138|gb|EFK18631.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 421

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|307104451|gb|EFN52705.1| hypothetical protein CHLNCDRAFT_36787 [Chlorella variabilis]
          Length = 689

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 151/521 (28%), Positives = 250/521 (47%), Gaps = 40/521 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    AL ERG  +L  +Q+ +  P +R  D++  A+TGSGKT+AF + +   ++A  
Sbjct: 158 LSEGSVRALEERGITSLFPIQKTVFEPAMRGADLIARAKTGSGKTLAFAIPIIEKIMAGP 217

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L +APTRELA QV RE+       G+      GG  +  + ++L+ G  
Sbjct: 218 RNL---RKPQCLVLAPTRELAKQVEREIAATA--PGLGCGCYYGGNPIGPQLKELRRGVD 272

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D I    L++S ++ VVLDEAD+ML++GF  D+E IL++ P++R+ ++FS
Sbjct: 273 IVVGTPGRIIDLIDQDALDLSMVRFVVLDEADQMLNVGFEKDVETILENVPQERQTMLFS 332

Query: 187 ATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   +           + + +       Q  D      + A + R   +  +  Y   
Sbjct: 333 ATLPRWVKKLVKQYLNNPENIDLVGEGNTGQDPDSITALAVPADARRSVLVDLLTVYGEG 392

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AIVF  T+         +  HL    AL G++SQ+ER   L   R  +  V +ATDVA
Sbjct: 393 GKAIVFTQTKREADEVAASVGGHLPC-GALHGDMSQREREKVLASFRANKLMVLVATDVA 451

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+PD+++V+H EL  +PE+ LHRSGRTGRAG+ G ++ +         +R+ RE  
Sbjct: 452 ARGLDIPDVDVVVHYELPQDPESFLHRSGRTGRAGKSGTAIAMFQPKEIGYFKRILRETE 511

Query: 365 VS-VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV----DVLLAKHDPEKIAAG 419
           V  V    APS   + E  A++++     LD +  + +K       +LL+  DP++    
Sbjct: 512 VQGVKLITAPSPTQVIEAAAKQVM---YRLDGVDAEVRKYFTPVAKMLLSSRDPQEALEA 568

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
            L         PE  + +++  G    +  S+  ++   +  +                 
Sbjct: 569 ALAALSGIQEVPEPRSLLTMEEGIQTLQMMSKPGRITRPAHVSG---------------- 612

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDL----TFVEVSAD 516
               ++  L   +  N  ++G IR+  +        +V  D
Sbjct: 613 ----IVGKLLEGTAFNAGAVGRIRMLEEEGQCGAAFDVPMD 649


>gi|218550995|ref|YP_002384786.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ATCC 35469]
 gi|331675250|ref|ZP_08376001.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331685499|ref|ZP_08386083.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
 gi|226739539|sp|B7LU75|RHLB_ESCF3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218358536|emb|CAQ91184.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|323964028|gb|EGB59518.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323974364|gb|EGB69492.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324111007|gb|EGC04994.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325499248|gb|EGC97107.1| ATP-dependent RNA helicase RhlB [Escherichia fergusonii ECD227]
 gi|327250632|gb|EGE62338.1| ATP-dependent RNA helicase rhlB [Escherichia coli STEC_7v]
 gi|331067536|gb|EGI38940.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA280]
 gi|331077200|gb|EGI48414.1| ATP-dependent RNA helicase RhlB [Escherichia coli H299]
          Length = 421

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|332525252|ref|ZP_08401425.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332108534|gb|EGJ09758.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 520

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 198/377 (52%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+++ GY   T VQ   + P L   D++VS+ TGSGKT +F L   + +LA  
Sbjct: 1   MPEALARAVADAGYTTPTEVQSRAIPPALGGADLMVSSSTGSGKTASFVLPALTRILAAR 60

Query: 67  DRFSPA-----SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
                      S P  L +APTRELA+QV +          G+ VA  +GGV    + + 
Sbjct: 61  GDGKRREKGVVSGPRILVLAPTRELAMQVAKATNDYGRHVQGLRVATIVGGVPYGAQLKA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL DH+      +++++ +VLDEAD MLD+GF DDI  I  ++P  R
Sbjct: 121 LRGPLDVLIATPGRLMDHMASGRAVLANVEMLVLDEADRMLDMGFIDDIHHIASATPAAR 180

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + +M+SAT +  +  LA+   ++  R+ IAS    H+DI+ R       + ++  + +IL
Sbjct: 181 QTVMYSATFAGHVGRLAEELLREPQRIEIASHTDVHADIEQRLHWADNFAHKNALLDHIL 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                + A+VF ST+         LAE    V +L G   Q  R+  LQ +R    ++ +
Sbjct: 241 TERSVEQAVVFTSTQRDADWLADRLAEMGHHVASLHGGHPQGRRNRVLQGLRSRDLKILV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+P +  VI+  L    E+ +HR GRTGRAGR G++V +  +       R+
Sbjct: 301 ATDVAARGIDVPTISHVINFGLPMKAEDYVHRIGRTGRAGRSGLAVTLAERGDAGMIHRI 360

Query: 360 FREANVSVVWEPAPSVE 376
            R     +       +E
Sbjct: 361 QRFTTQRIPSATIEGLE 377


>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
 gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
          Length = 397

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQKWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|238892385|ref|YP_002917119.1| ATP-dependent RNA helicase RhlB [Klebsiella pneumoniae NTUH-K2044]
 gi|238544701|dbj|BAH61052.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 421

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRQVNQPRALIMAPTRELAVQIHADAEPLALATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|306813632|ref|ZP_07447813.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|222033147|emb|CAP75887.1| ATP-independent RNA helicase dbpA [Escherichia coli LF82]
 gi|305852906|gb|EFM53351.1| ATP-dependent RNA helicase DbpA [Escherichia coli NC101]
 gi|312945979|gb|ADR26806.1| ATP-dependent RNA helicase DbpA [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 457

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQIDVS------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGHSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|238784757|ref|ZP_04628760.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
 gi|238714353|gb|EEQ06362.1| ATP-dependent RNA helicase rhlB [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIQALENKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSNP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AQEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|33151461|ref|NP_872814.1| ATP-dependent RNA helicase SrmB [Haemophilus ducreyi 35000HP]
 gi|33147681|gb|AAP95203.1| ATP-dependent RNA helicase protein [Haemophilus ducreyi 35000HP]
          Length = 442

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 181/372 (48%), Gaps = 8/372 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY   TSVQ   +   L  +D+L SA TG+GKT AF L     LL    R     AP  L
Sbjct: 27  GYTRPTSVQAETIPYALAGRDLLGSAPTGTGKTAAFLLPAIQHLLDYPRR--KPGAPRIL 84

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA+QV  E +   A T + +A   GGV+         +   IVV TPGRL  +
Sbjct: 85  ILTPTRELAMQVAEEAQAFAAFTTLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQY 144

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I+ +  +   ++ ++LDEAD ML +GF  D+E I+  +  ++   +FSAT+   + T   
Sbjct: 145 IKEENFDCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKYTWLFSATLEGELLTDFS 204

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
                      A  +R+      +       +  +   +  I+     +  IVF   R  
Sbjct: 205 ERILTDPLHINADPSRRERKKIQQWYYHADNVEHKTKLLARIITTIEMEKVIVFVRRRED 264

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V   +  L +   +   L G+++Q +R+ A+  +++G   V +ATDVAARGID+ +++ V
Sbjct: 265 VRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKEGGVNVLVATDVAARGIDIDEVDYV 324

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE----ANVSVVWEPA 372
           I+ +L  + +  LHR GRT RAG+KG ++ ++  +  +   ++ R         +V    
Sbjct: 325 INFDLPYSEDTYLHRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTQEALKPRIVEGLE 384

Query: 373 PSVEAIRERDAQ 384
           P  +A ++ +  
Sbjct: 385 PRTKAPKDGELN 396


>gi|120598117|ref|YP_962691.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293812|ref|YP_001184236.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558210|gb|ABM24137.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
 gi|145565502|gb|ABP76437.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 413

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 119/354 (33%), Positives = 191/354 (53%), Gaps = 4/354 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +   ++E GY   T +Q   +   L ++DV+  AQTG+GKT AF L +  
Sbjct: 2   SFSSLSLNTTLVNTITELGYSLPTPIQSEAIPVILAKQDVMAGAQTGTGKTAAFALPILH 61

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            L+A+N   +        AL + PTRELAVQV +        T + + +  GGVS+  + 
Sbjct: 62  LLMAKNVEQKAERVKTVQALVLVPTRELAVQVHQSFVKYAKNTDIRIGIAYGGVSIDAQV 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G  +++ TPGRL DH+R   LN++ L  +V DEAD MLD+GF D+I  +L   PK
Sbjct: 122 DVFKTGIDVLIATPGRLLDHLRQGVLNLNQLSTLVFDEADRMLDMGFMDEINAVLKQVPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+  AI  L+K+  ++   + +   N   + ++ R   +    +   + ++
Sbjct: 182 DRQTLLFSATLDDAIFELSKSLLREPKLIEVTKRNTTAAQVEQRVYAIDSDRKTEFVSHL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R +     ++F  T+  V R  + L +      A  G+LSQ  R   LQ  + G  +V 
Sbjct: 242 IRSNYWHQVLIFSRTKQGVDRLVQQLNKLSIVTHAFHGDLSQGAREKVLQAFKLGNIQVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           +ATDVAARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q  
Sbjct: 302 VATDVAARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355


>gi|255078748|ref|XP_002502954.1| predicted protein [Micromonas sp. RCC299]
 gi|226518220|gb|ACO64212.1| predicted protein [Micromonas sp. RCC299]
          Length = 435

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 185/383 (48%), Gaps = 15/383 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  ++P    + L++ G+ + T VQ       L  +DV+  A+TGSGKT+AF L   
Sbjct: 48  STFEESSLPAYCVDELAKCGFPSPTPVQSQTWPAALSGRDVISIAETGSGKTLAFLLPAV 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A+         P+ L +APTRELAVQ+  +       + +  A   GG   + +  
Sbjct: 108 VHINAQ-PYLERGDGPIVLILAPTRELAVQIQEQAATFGKSSKIKSACIYGGAPRNAQIA 166

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  + V TPGRL D +  K  N+  +   VLDEAD MLDLGF   I  +   +   
Sbjct: 167 ALREGVELCVATPGRLLDLLNAKATNLRRVTYFVLDEADRMLDLGFEPQIRRVERLTRPD 226

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+F+AT    +   A ++  D V V I     R   ++     +V   D+   +V  
Sbjct: 227 RQTLLFTATWPAEVAAAAGDFTNDVVTVRIGGEALRASDNVSQIVEVVDEDDKHAKLVGW 286

Query: 239 LRYH--------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           L                IVF S++A V   T+ L    F  +++ G+ +Q+ER   L   
Sbjct: 287 LERALGEADAGGWTPRVIVFLSSKARVDSATRRLRHEGFPALSIHGDKTQEEREWVLGEF 346

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G++ V +ATDVAARG+D+ D+ LVI+ +  +  E+ +HR GRTGRAG KG +  +   
Sbjct: 347 RAGKSPVMLATDVAARGLDVKDVSLVINYDFPAKMEDYVHRIGRTGRAGAKGAARSMFAA 406

Query: 351 NMQRRAER---LFREANVSVVWE 370
              R A     L + A   V  E
Sbjct: 407 GDARHARSLCGLLQTAGQPVPRE 429


>gi|327554933|gb|AEB00820.1| vasa-like protein [Penaeus monodon]
          Length = 707

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 15/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E +++ GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 271 NLRPLLLENIAKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDN 330

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +   + + + 
Sbjct: 331 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQLKTIH 390

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++        
Sbjct: 391 SGCHILVATPGRLLDFVEKGKVVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTT 450

Query: 183 L----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                MFSAT    I  LA  +  + + V + S    ++D+    + V   ++   +V +
Sbjct: 451 DRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEM 510

Query: 239 LRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 511 CEEILINAEDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTEFRTGV 570

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + +AT VAARG+D+  + +V++ +L    +  +HR GRTGR G +G+S+    +    
Sbjct: 571 YNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISFYDEEADA 630

Query: 352 -MQRRAERLFREANVSVV 368
            + +   ++  EA  ++ 
Sbjct: 631 CLTKDLVKVLSEAEQTIP 648


>gi|324504040|gb|ADY41744.1| ATP-dependent RNA helicase DDX42 [Ascaris suum]
          Length = 808

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 4/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y + T++Q   +   L  +DVL  A+TGSGKTVA+       ++ + 
Sbjct: 280 FDEALMNTIRKSEYEHPTAIQAQSVPAALSGRDVLGIAKTGSGKTVAYLWPAIVHIM-DQ 338

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P+AL + PTRELA+QV +E +       + V    GG S   ++  L+ GA 
Sbjct: 339 PQLKEGDGPIALIVVPTRELAIQVYQEAKRFCKVYNIAVVCAYGGGSKWEQQNALKEGAE 398

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGR+ D ++ +  N + +  +V DEAD M D+GF   ++ I D     R+ LMFS
Sbjct: 399 LVVATPGRIIDLVKIEATNFTRVTFLVFDEADRMFDMGFEAQVKSISDHIRPDRQCLMFS 458

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGAK 245
           AT    +  LA++   D VR+        + D+     +  ++  +   ++  L    A+
Sbjct: 459 ATFKAKVERLARDALVDPVRIVQGEVGEANEDVIQNVEVLPSVDAKWRWLLQRLVQFLAQ 518

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++   T+   +       +     + L      Q   N           + +ATDVAA
Sbjct: 519 GKVLIFVTKKQNAEEVAQRLQTNDFALVLLHGDMLQAERNEKLHAFRKDTALMVATDVAA 578

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P++  VI+ +L+ + +  +HR GRTGRAG KG +  ++    +  A  L R  N+
Sbjct: 579 RGLDIPEIRTVINFDLARDIDTHVHRIGRTGRAGEKGYAYTLLTDADKEMAGHLVR--NL 636

Query: 366 SVVWEPAPSV 375
             V +  P  
Sbjct: 637 ESVNQTVPDA 646


>gi|311276168|ref|XP_003135076.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Sus
           scrofa]
          Length = 646

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 163 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 222

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 223 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 282

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 283 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 342

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 343 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 402

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 403 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 462

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 463 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 522

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 523 GLATSFFNERNANITKDLLDLLVEAKQEVP 552


>gi|54302661|ref|YP_132654.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 474

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 171/366 (46%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+  G+   T +Q   +   +  KDVL S++TGSGKT+AF L      +   
Sbjct: 35  LDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQR-MYRG 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+       L + PTRELA QV  +L  L A T    A+ +GG + + + ++ +    
Sbjct: 94  KPFTRRDQ-RVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPM 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGR  DH+  +  ++  L+ ++LDEAD MLDLGF   +  I    +   ++  M 
Sbjct: 153 FVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRRQTLMF 212

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +      I   ++           +S            +   L  +   +  +L    
Sbjct: 213 SATMDNEDVIEMASEMLNAPKRLSIGSSNEEHTDITQRFYLCDHLDHKQALLDKVLETED 272

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TDV
Sbjct: 273 YNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVTTDV 332

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++     +  + +    
Sbjct: 333 ASRGLDIEGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKSVEAYL 392

Query: 364 NVSVVW 369
             S+ +
Sbjct: 393 QQSISF 398


>gi|33593984|ref|NP_881628.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|33564058|emb|CAE43326.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383401|gb|AEE68248.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
          Length = 574

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 6/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 14  SFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +  +    +       L + PTRELA+QV            G+  A  +GG+    + +
Sbjct: 74  RIAHQPG--NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  PK+
Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238
           R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I    +    +  +   + ++
Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHV 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G+ RV 
Sbjct: 252 LRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G +  +     + +  R
Sbjct: 312 VATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRR 371

Query: 359 LFREANVSVVWEPAPSVE 376
           +      S+  E    +E
Sbjct: 372 IEHYIGQSINAEVIAGLE 389


>gi|295095196|emb|CBK84286.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 422

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAVNQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVW 369
             S+  
Sbjct: 376 GHSIPQ 381


>gi|293605139|ref|ZP_06687530.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
 gi|292816463|gb|EFF75553.1| ATP-independent RNA helicase DbpA [Achromobacter piechaudii ATCC
           43553]
          Length = 462

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 132/405 (32%), Positives = 202/405 (49%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    + + L   G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   
Sbjct: 6   FSTLPLLPALLDNLQSLGFEQMTPIQAQSLPLILEGRDIIAQAKTGSGKTAAFGLGVLQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L           AP AL + PTRELA QV +EL  L      V +    GG     +   
Sbjct: 66  LDPAR------LAPQALLVCPTRELADQVAQELRRLARLIPNVKILTLCGGAPARPQAES 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GAH+VVGTPGR+ DH+    L++S L  +VLDEAD M+D+GF DDI  I    P KR
Sbjct: 120 LARGAHLVVGTPGRIQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + ++   V         S I+     +   DR +A+  +L 
Sbjct: 180 QTLLFSATYPDNIRKLSARFLRNPAEV-KVEAQHDASRIEQIFYEIDEKDRLDAVARLLA 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+T+       + L        AL+G+L Q+ER   L    +    V +A
Sbjct: 239 HFRPVSTLAFCNTKIRSHDLVERLQADGISAQALNGDLEQRERDEILIQFANQSCAVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L  VI+ +++ + E  +HR GR+GR  +KG+++ +   +  R A  + 
Sbjct: 299 TDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLVE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + W    S++      A R L+ P+    IQG +K  + 
Sbjct: 359 QYQGTPLKWGDIKSLKP----KADRPLRAPMVTLCIQGGKKDKLR 399



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 17/193 (8%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R E L + AN S     A  V A R  D Q +        +   +          +
Sbjct: 277 EQRERDEILIQFANQSCAVLVATDVAA-RGLDIQNLGAVINVDVTKDTEVHVHRIGRSGR 335

Query: 411 HDPEKIAAGFLR---IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            D + +A        +  A L    + TP+     +       R  +             
Sbjct: 336 GDQKGLALSLCSPDEMRWANLVEQYQGTPLKWGDIKSLKPKADRPLRA---------PMV 386

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRR 523
              +  G K K     L+  L    G+  + +G I +     +V    +++      +  
Sbjct: 387 TLCIQGGKKDKLRPGDLLGALTGDGGLTFEQVGKINITEFNAYVALDRQIAKQAFSRVSN 446

Query: 524 TVKLDKGIQLKYL 536
           +    +  ++++L
Sbjct: 447 SNIKGRRFRMRFL 459


>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
 gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
          Length = 545

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 193/389 (49%), Gaps = 27/389 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 74  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 133

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 134 KTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 193

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 194 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 253

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+ ++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 254 IEDIETIVAATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 313

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 314 VDDRDHKDRLLDHLLRDDALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 373

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 374 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 433

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAP 373
           V ++    Q   +R+ R      V  P P
Sbjct: 434 VSLVHHAEQGALKRIER-----FVRSPLP 457


>gi|223933109|ref|ZP_03625101.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|302024360|ref|ZP_07249571.1| helicase [Streptococcus suis 05HAS68]
 gi|330833357|ref|YP_004402182.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
           suis ST3]
 gi|223898170|gb|EEF64539.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
 gi|329307580|gb|AEB81996.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
          Length = 447

 Score =  184 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 203/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   I EAL E  +V  T VQE ++   L  +D++  ++TGSGKT  F + + 
Sbjct: 1   MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E D+        A+  AP+RELA Q+ +    L + + + V V           +
Sbjct: 61  QKLSEELDQV------QAVITAPSRELATQIYQAARQLASHSDIEVRVTNYVGGTDKNRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIVVGTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S 
Sbjct: 115 IDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + ++FSATI   +    K Y  + V   I +       I+   +     DR+  I+
Sbjct: 175 PKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQIL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L  +  +V  + G++  +ER   +  +++   +
Sbjct: 235 EVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPSDDADI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +  N+  + +   + E               F+D+   D +   +    K D E I
Sbjct: 355 RELEK-LNIKFLPKEMKNGE---------------FVDTYDRDRRANREKSREKLDLEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKR 444


>gi|91179152|gb|ABE27760.1| pl10-like protein [Chlamys farreri]
          Length = 760

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 190/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   + ++I   +    Y   T VQ+  +   L ++D++  AQTGSGKT AF + +
Sbjct: 277 IESFEETELGEIIRNNIVLSKYTKPTPVQKYSIPIVLSKRDLMACAQTGSGKTAAFLVPV 336

Query: 59  ASTLLAENDRFSP------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            + +        P               P+AL +APTRELA Q+  E      ++ V   
Sbjct: 337 LNRVYDNGPGDIPTQNNQQGRYSRRKQYPVALILAPTRELASQIYDEARKFAYRSRVRPC 396

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  +  + RDL  G H++V TPGRL D I    + + + K +VLDEAD M D+GF 
Sbjct: 397 VVYGGADIGAQIRDLDRGCHLLVATPGRLVDMIERGKIGLDYCKFLVLDEADRMSDMGFE 456

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + LMFSAT    I  LA+++  + + + +        +I  +
Sbjct: 457 PQIRRIVEKDTMPPSGTRQTLMFSATSPKEIQILARDFLDNYIFLAVGRVGSTSENITQK 516

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIV--FCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            V V   D+ + ++++L       A+   F  T+         L    +   ++ G+ SQ
Sbjct: 517 VVWVEEGDKRSFLLDLLNAAAGPEALTLTFVETKKGADALEDFLIVEGYPATSIHGDRSQ 576

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL+  R+G   + +AT VAARG+D+P++  V++ +L S+ E  +HR GRTGR G 
Sbjct: 577 KEREEALRQFRNGDRPILVATAVAARGLDIPNVRHVVNFDLPSDIEEYVHRIGRTGRVGN 636

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G++     +   N+ R    L  EA+  V 
Sbjct: 637 LGLATSFFNEKNKNIIRDLMDLLVEAHQEVP 667


>gi|240103967|ref|YP_002960276.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
 gi|239911521|gb|ACS34412.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Thermococcus
           gammatolerans EJ3]
          Length = 403

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 204/388 (52%), Gaps = 13/388 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALA 59
            FE   + +   EA+  +G+   T +Q  ++   L  + D++  +QTG+GKT AF L + 
Sbjct: 13  SFERLGLSESSLEAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTGTGKTAAFALPII 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              A+ + PTRELA+QV  E++ L  K  V V    GG  +  + R
Sbjct: 73  EAIDPNEKTV------QAIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQPIGPQIR 126

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G H+VVGTPGR+ DH+    L++S ++  VLDEAD MLD+GF DDIE I+  +P++
Sbjct: 127 ALERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIMRRAPQE 186

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +R+LMFSAT+   I  LAK Y ++   + ++ +      +D   V V  + +   +  +L
Sbjct: 187 KRILMFSATMPMGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLPARKYEKLKEVL 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC T+      ++ L    F+  AL+G++SQ  R       ++G+  V +
Sbjct: 247 GE--GFYGIIFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKINVLV 304

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ ++  VI+  L  N E  +HR GRTGR G++G ++  +      R   +
Sbjct: 305 ATDVAARGLDVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGRFRDI 364

Query: 360 FREANVSVVWEPAPS--VEAIRERDAQR 385
            R+A V V          +  RE D +R
Sbjct: 365 ARKAKVEVKRSKLSERIPKRFREEDLER 392


>gi|148184|gb|AAA67581.1| unknown [Escherichia coli str. K-12 substr. MG1655]
          Length = 421

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AA G+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|254456111|ref|ZP_05069540.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083113|gb|EDZ60539.1| ATP-dependent RNA helicase RhlE [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 536

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 227/476 (47%), Gaps = 29/476 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+ +   + +  +L++  +   T +Q   +   L  KD+L +AQTG+GKT+AF + L
Sbjct: 1   MENFKLLKIEESLKNSLNKMNFTKPTPIQGMAIPAALEGKDILGTAQTGTGKTLAFSIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRE 117
            + L+ + + F       AL + PTRELA QV   ++ +   K  +  A+ IGG S+ ++
Sbjct: 61  INKLILDKNAF-------ALVMCPTRELATQVMEAIKSIISDKINIKTALLIGGESMQKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L N + I+VGTPGR+ DH++ K LN+S  K +VLDE D MLD+GF   IE +L   P
Sbjct: 114 LRQLGNRSRIIVGTPGRINDHLKRKSLNLSATKYLVLDETDRMLDMGFTPQIEMVLKFVP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   I  +++ Y     R++  + +   + I    + V   ++ + +++
Sbjct: 174 KDHQTLLFSATLPQNILRISERYLHKPERISTGATSVPIAKIKQETLQVFKENKYDELID 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF  T+ S  +  K L E       + G+L Q +R   +   R G  R+
Sbjct: 234 QFLARKGS-ILVFVKTKRSADKMVKRLKEEGHSADGIHGDLRQSKRDRVINSFRKGLKRI 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+P ++ VI+ +L   PE+ +HR GRT RAG +G ++  +  + +    
Sbjct: 293 LIATDVAARGLDIPLIQHVINYDLPQVPEDYVHRIGRTARAGSEGSALTFLTPDDRSMWN 352

Query: 358 RLFREANVSVVWEPAPSVEAIRER--------DAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            + +  + +    P+      + +          ++  ++       + D          
Sbjct: 353 SINKLIDPNFKAVPSGLRRDSKNKRRGKGPNNKKRKAREEKRSFGKGRQDRSSSFRNKPK 412

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +D            R+G    +         G+  FRD  +++      R +  G
Sbjct: 413 SYDK----------SRSGKPPRDGEKKSFGFKGKSSFRDKPKSYSKDRSQRPSRDG 458


>gi|154279136|ref|XP_001540381.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
 gi|160380637|sp|A6R3L3|DED1_AJECN RecName: Full=ATP-dependent RNA helicase DED1
 gi|150412324|gb|EDN07711.1| ATP-dependent RNA helicase ded1 [Ajellomyces capsulatus NAm1]
          Length = 694

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 184/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 202 ITAFTNPPLHEHLLSNIVLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 261

Query: 59  A-STLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
              +L         A          P AL + PTREL  Q+  E      +T +   V  
Sbjct: 262 LSQSLHTRGPEAEAARGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 321

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    ++++H++ +VLDEAD MLD+GF   I
Sbjct: 322 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQI 381

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAV 224
             I+  S    + +  +   S       +   ++ ++ +I        +   +       
Sbjct: 382 RRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRIVE 441

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             +  D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 442 CESDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 501

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 502 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIS 561

Query: 345 VFVIPQN----MQRRAERLFREANVSVV 368
                ++    + R    L ++AN  V 
Sbjct: 562 TAFFSRSKNFKIARSLVDLLKDANQEVP 589


>gi|152995705|ref|YP_001340540.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836629|gb|ABR70605.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 438

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 199/360 (55%), Gaps = 7/360 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +QE  L P +  KD+L  AQTGSGKT+AF +AL   +   N RF       A
Sbjct: 1   MGFTTFTPIQEQSLPPMIEGKDILAQAQTGSGKTLAFSIALLLKI---NPRF---FGVQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV +E+  +      +  +   GG+    +   L++GAHIVVGTPGRL 
Sbjct: 55  LVMCPTRELADQVSKEIRKVARYQDNIKVLSLCGGMPFGPQIGSLEHGAHIVVGTPGRLM 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           +H+R   L ++ L  +VLDEAD MLD+GF D I  I++ +P  R+ L+FSAT    I  +
Sbjct: 115 EHLRKGTLKLNALNTLVLDEADRMLDMGFVDSIREIVELTPSNRQTLLFSATYGDGIEAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +K +Q   + + + ++     +I+   V     D+   ++  L++   + AIVFC+T+A 
Sbjct: 175 SKEFQSTPISIKVEAQEDLKPNIEQFFVRSENKDKCETLLATLQHFEPRQAIVFCNTKAE 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L+EH     A+ G+L Q++R   L    +  + V +ATDVAARGID+ +++LV
Sbjct: 235 SQVVADWLSEHKVAAQAIHGDLEQRQRDQVLVRFSNQSSCVLVATDVAARGIDVKEIDLV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ + + + +   HR GRTGRAG  G++V ++      +   +    N++  +    +++
Sbjct: 295 VNYDTTRDTDVHTHRIGRTGRAGAAGIAVNLVTSKDDYKVRDIESRFNITANFIELEAID 354



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV- 525
           +  S   G K K     ++  L    G+++  +G I +     +V V  +    + +   
Sbjct: 364 TTISFDAGRKNKLRPGDILGALTAGLGLDKSQVGKIDIFDFHAYVSVDNEVAKTVVKEFE 423

Query: 526 -KLDKGIQLK 534
            K  KG  ++
Sbjct: 424 NKKIKGKNIR 433


>gi|255956657|ref|XP_002569081.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590792|emb|CAP96992.1| Pc21g20950 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 805

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 105/472 (22%), Positives = 201/472 (42%), Gaps = 14/472 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  +   + L+   +  LT +Q   +N   + +D+L +A+TGSGKT+AF + +
Sbjct: 45  VKNFSDLPLSEPTAKGLAASHFKTLTDIQSRAINHAFKGRDILGAAKTGSGKTLAFLVPI 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 105 LENLY--RKKWTELDGLGALVLSPTRELAIQIFEVLRKIGRYHNFSAGLIIGGKSLREEQ 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     ++      L    +      ++L+ +VLDEAD ++D+GF+  ++ I+D  PK
Sbjct: 163 DRLGRMNILICTPGRMLQHLDQTAMFETNNLQMLVLDEADRIMDMGFQKTVDAIIDHLPK 222

Query: 179 KRRMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +            + + V V+ A+ +   S +     +  L  + + + 
Sbjct: 223 QRQTMLFSATQTKKVGDLARLSLQEPEYVSVHEAAASATPSTLQQHYTITPLPQKLDTLW 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     +VF S+   V    + L +    +  L     Q++             +
Sbjct: 283 SFIRSNLKSKTVVFLSSGKQVRYVYESLRQLQPGISLLHLHGRQKQGGRLDITTKFSQAQ 342

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + ++
Sbjct: 343 HAVLFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERVGRAVLFLDPSEEK 402

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +      V +      S +   ++ +      +DP      Q      V  +  + D
Sbjct: 403 GFLKQLEHKKVPIEKINIKSNKQQSVKNQLQNMCFKDPELKYLGQKAFISYVKSIYVQKD 462

Query: 413 PEKIAAGFLRIHRA----GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            E      L +       GL     I  +     ++R  +  R  ++ G   
Sbjct: 463 KETFKIKELPLEEYAASLGLPGAPRIKFIKGDDAKERKNESWRMAQMSGDDD 514


>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|122247124|sp|Q10MH8|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
 gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
 gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 770

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 218 IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 278 IVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 337 KELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 397 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLE 456

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   
Sbjct: 457 KLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 516

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRF 576

Query: 356 AERL---FREANVSVVWE 370
           A  L      A   V  E
Sbjct: 577 AGELVHCLIAAGQDVPNE 594


>gi|78485292|ref|YP_391217.1| ATP-dependent RNA helicase DbpA [Thiomicrospira crunogena XCL-2]
 gi|78363578|gb|ABB41543.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
          Length = 468

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/400 (32%), Positives = 205/400 (51%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L    Y  LT +Q   L P L  KDV+   +TGSGKT AFGL +   L  +N
Sbjct: 17  LHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDVIAQGKTGSGKTAAFGLGVLQKLDVKN 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV  E+  L  +   +  +   GG+ +  +   LQ GA
Sbjct: 77  FNV------QALVLCPTRELADQVANEIRRLARQLQNIKVLTLCGGMPMGPQISSLQQGA 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH++   L ++ +K +VLDEAD ML++GF+  ++ I+D  P++R+ L+F
Sbjct: 131 HIVVGTPGRIEDHLKKARLTLAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +++      VRV +AS +   +   +   + +   R  A+  +L     +
Sbjct: 191 SATFPKQIEHISQRIMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPE 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+  V      L +  F  +AL G+L Q++R   L    +    + +ATDVAA
Sbjct: 251 SSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSISILVATDVAA 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V++  L+ +PE  +HR GRTGRAG +G++   I      +   L      
Sbjct: 311 RGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVACSFISDKESYKVATLAEYLGQ 370

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            +  EP P    +     Q  LQ  +    I G +K  + 
Sbjct: 371 DIQTEPLPDASLLN----QPPLQAKMVTLLIDGGKKNKLR 406



 Score = 46.9 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 23/64 (35%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L  +  +N   +G I++    ++V V+        + +
Sbjct: 392 MVTLLIDGGKKNKLRPGDILGALTANDVLNAGQVGKIKITDKKSYVAVTRSMFKQALKQL 451

Query: 526 KLDK 529
              K
Sbjct: 452 GAGK 455


>gi|330844673|ref|XP_003294242.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
 gi|325075337|gb|EGC29238.1| hypothetical protein DICPUDRAFT_159210 [Dictyostelium purpureum]
          Length = 599

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 125/480 (26%), Positives = 225/480 (46%), Gaps = 16/480 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N+P      +++ E  +  +T +Q   + P L  KD+L +A+TGSGKT+AF +     
Sbjct: 121 FANLPIHDNTKKSIEEMTFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEI 180

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+     F P +    + I+PTRELA+Q+    + L         + IGG +   E   L
Sbjct: 181 LVKSG--FKPRNGTGVIIISPTRELALQIYGVAKELLKYHTQTHGIIIGGAAKKPEEERL 238

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G +++V TPGRL DH++        +LK +V+DEAD +L++GF +++  I+   PK R
Sbjct: 239 EKGVNLLVATPGRLLDHLQNTKGFITKNLKCLVIDEADRILEVGFEEEMHKIVKLLPKNR 298

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVN 237
           + ++FSAT +  +  +AK    ++       + R+ S +   +   V+     R   +  
Sbjct: 299 QTMLFSATQTRKVEDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYT 358

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  IVF S+  +V    ++L      V+ L G   QQ+R+N      +    +
Sbjct: 359 FLKRNLNKKVIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGI 418

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRA 356
            I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG ++  +        
Sbjct: 419 LICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFL 478

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + L + A V +     P  +    +D  ++++    +L +   D  K      A H  ++
Sbjct: 479 KYL-KLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYICAYASHSHKE 537

Query: 416 I----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
           I    A     + +A G   P ++      SG++  + ++R+      +    K      
Sbjct: 538 IFDVNALDLQMVAKAFGFNDPPKVNLSVNSSGKNDRKTNNRSGFANKQNGRFPKKDGRQF 597


>gi|297161036|gb|ADI10748.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 433

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 192/374 (51%), Gaps = 11/374 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   LSE G      +Q A L   L  +DVL   +TGSGKT+AFGL L +       R +
Sbjct: 1   MLRTLSELGVREPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLPLLAR---TAGRRA 57

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA +VV 
Sbjct: 58  EPKQPLALILVPTRELAQQVTEALAPYAEALRLRMATVVGGMSIGRQAAALRHGAEVVVA 117

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD      + ++FSAT+ 
Sbjct: 118 TPGRLHDLIERRACRLGRVGITVLDEADQMCDMGFLPHVSEVLDQVHPDGQRMLFSATLD 177

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
             +  L + Y  D V  ++       + +D+  ++V   DR    V           ++F
Sbjct: 178 RDVDHLVRRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYA--VTTEIAARDGRVLLF 235

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAARG+ +
Sbjct: 236 LDTKHAVDQLTRHLRASGVHAAALHSGKSQPQRTRTLAQFKNGQITVLVATNVAARGLHV 295

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   RL  EA +     
Sbjct: 296 DDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLAGQRREMSRLMAEAGIE---- 351

Query: 371 PAPSVEAIRERDAQ 384
             P++  +R  +A+
Sbjct: 352 --PTITKVRSGEAE 363


>gi|294893610|ref|XP_002774558.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239879951|gb|EER06374.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 639

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 120/409 (29%), Positives = 192/409 (46%), Gaps = 23/409 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    PQ I EAL  +G    T +Q   L   L  +D++  A TGSGKT+ F +  
Sbjct: 192 IKSFKEMLFPQGILEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIPA 251

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAK-------------TGV 103
               +    R   + +  P  L IAP+RELA Q    +E+  +                +
Sbjct: 252 ILRAMEMEMRAPVTDSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGLPSSRSRHRLPRL 311

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              +CIGG S+ R+  +++ G HIV  TPGRL   +  K   ++    + LDEAD M+DL
Sbjct: 312 RCQLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDL 371

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF D++   LD    +R+ L+FSAT+   I   A +   + V +N+      + D+    
Sbjct: 372 GFEDEVRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNPVTINVGRAGAANLDVVQEV 431

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V    +   ++  L+       +VFCS +AS     + L        A+ G L Q ER
Sbjct: 432 EYVKAESKLTYLLQCLQKTAPP-VMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSER 490

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             + ++ + G   V I TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G+
Sbjct: 491 HKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTGV 550

Query: 344 SVFVIPQNMQR----RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +   I +++        + +  EA   V       +EA+   D   ++ 
Sbjct: 551 ATTFINKSVDETVLLDLKAILEEAGQRVPPF-LEHLEAVGGEDTAEVVN 598


>gi|220913250|ref|YP_002488559.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219860128|gb|ACL40470.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 561

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 221/462 (47%), Gaps = 31/462 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ Q I ++LS+ G  +   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  KSFADYNVRQDIVDSLSDAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D    + +   AP AL I PTRELAVQV  +L+    K    +A   GG +  
Sbjct: 97  QRVVGRDDAGYDKLAVPGAPQALVIVPTRELAVQVASDLQAASTKRNARIATIYGGRAYE 156

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+NG  +VVGTPGRL D  R K L++ +++ VVLDEADEMLDLGF  D+E I+  
Sbjct: 157 PQVEALKNGVEVVVGTPGRLIDLYRQKHLSLKNVRIVVLDEADEMLDLGFLPDVETIIAG 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRD 232
           +P  R+ L+FSAT+   +  +A+ Y      +  A  +       DI          D+ 
Sbjct: 217 TPAVRQTLLFSATMPGPVIAMARRYMTQPTHIRAADPDDEGLTKRDIRQLIYRAHSMDKT 276

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    I+F  T+ + ++  + L +  F   A+ G+L Q  R  AL+  R+
Sbjct: 277 EVVARILQARGRGRTIIFTKTKRTAAKVAEELVDRGFAAAAIHGDLGQGAREQALRAFRN 336

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +  + 
Sbjct: 337 NKVDVLVATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDD 396

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             R   + +   ++V        E +    +   L + L +              LA  D
Sbjct: 397 VPRWALINKALGLNVP-------EPVETYSSSPHLYEELDIPEGTKGRLPRNKRTLAGVD 449

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
            E +               E++      + R+   +D R  +
Sbjct: 450 AEVL---------------EDLGETGKKNSRESRGNDGRDRE 476


>gi|50123133|ref|YP_052300.1| ATP-dependent RNA helicase RhlB [Pectobacterium atrosepticum
           SCRI1043]
 gi|56749479|sp|Q6CZD9|RHLB_ERWCT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|49613659|emb|CAG77110.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 430

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 191/387 (49%), Gaps = 3/387 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L+NG 
Sbjct: 76  ANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPATSQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILEEFTQGSIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S   + +  A + L  P
Sbjct: 376 GHGIPLSKYNSDALMNDLPAPKRLTRP 402


>gi|89073869|ref|ZP_01160376.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89050404|gb|EAR55905.1| ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 437

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 182/377 (48%), Gaps = 4/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNHLLETA 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELAIQIYNDASSLIASTGLKAGLAYGGEPYEKQKAVLDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+    P     L  
Sbjct: 136 DILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPNERLSL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAINLTAIEAYI 375

Query: 364 NVSVVWEPAPSVEAIRE 380
              +      S EA+ E
Sbjct: 376 EHGIPQSKYDS-EALLE 391


>gi|281345231|gb|EFB20815.1| hypothetical protein PANDA_010757 [Ailuropoda melanoleuca]
          Length = 404

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 196/373 (52%), Gaps = 11/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +    +   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYA--FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 96

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 97  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 150

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 151 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 210

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D +R+ +  +      I    V +     + + + ++ 
Sbjct: 211 QVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 270

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+T+  V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I
Sbjct: 271 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI 330

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 331 STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 390

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 391 EQYYSTQIDEMPM 403


>gi|188532351|ref|YP_001906148.1| ATP-dependent RNA helicase RhlB [Erwinia tasmaniensis Et1/99]
 gi|226739538|sp|B2VG58|RHLB_ERWT9 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|188027393|emb|CAO95240.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 430

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L+NG 
Sbjct: 76  APEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            +++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRTIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNLPAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIT 380


>gi|146311795|ref|YP_001176869.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
 gi|145318671|gb|ABP60818.1| ATP-dependent RNA helicase DbpA [Enterobacter sp. 638]
          Length = 457

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 134/390 (34%), Positives = 202/390 (51%), Gaps = 11/390 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    + L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLDNLNELGYLAMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------AGLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHPPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I S +   S         +   +   + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQNPATIEIDSVDALPSIEQQFYE-TSQKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+       + L E     +AL G+L Q++R   L    +G AR
Sbjct: 234 KLLSQHQPASCVVFCNTKKDCQAVCEALEEAGQSALALHGDLEQRDRDQTLIRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++ +      +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             L     + + W  APS   I    A+ +
Sbjct: 354 NILSEMLQLKLNWMSAPSNVGIVPLKAEMV 383



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG       LCAPEE    +++S   + + +  +     G     
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQLKLNWMSAPSNVGIVPLK 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K K     ++  L    G +   IG I V P   +V V     + + +
Sbjct: 380 AEMVTLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKIAVHPAHVYVAVRQSVANKVWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|94266535|ref|ZP_01290222.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
 gi|93452836|gb|EAT03359.1| Helicase-like:DEAD/DEAH box helicase-like [delta proteobacterium
           MLMS-1]
          Length = 524

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 187/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+   G+   T +Q  IL P L   D    AQTG+GK+ AF +++ + LL +
Sbjct: 105 DLAPEVMRAIQALGFEYCTPIQAEILPPTLAGHDAFGKAQTGTGKSAAFLISIITRLLRQ 164

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQN 123
                 A   P AL +APTRELA+Q+ ++ E L   +G+   AV  G     + +R  Q 
Sbjct: 165 RADQPRALGFPQALILAPTRELAIQIHQDAEGLARFSGLRCVAVYGGVDYEKQRQRFEQE 224

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +++ TPGRL D  R K L++  ++ +V+DEAD +LD+GF  D+  I+  +P+K +  
Sbjct: 225 PVDLLIATPGRLLDFARQKVLSLKEVQVLVIDEADRLLDMGFIPDVRRIIQQTPEKGKRQ 284

Query: 184 --MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT++  I++LA  +    V V I  E      ++    L    ++   + N++  
Sbjct: 285 TLFFSATLTAQISSLADQWTHKPVTVEIEPEQVAAESVEQLVYLATREEKFTILYNLIVG 344

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVFC+ R    R    L  H      LSGE+ QQ+R N L   + G+ R+ +AT
Sbjct: 345 RELERVIVFCNRRDVTRRVRDRLYRHDISCAMLSGEVGQQQRMNTLDNFKAGKIRILVAT 404

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RG+ +  +  V++  L  + E+ +HR GRTGRAG+ G SV    ++       +  
Sbjct: 405 DVAGRGLHVEGISHVVNYNLPEDAEDYVHRIGRTGRAGQSGTSVSFADEDESFYLPAIEE 464

Query: 362 EANVSVVWEPAPS 374
                +     P 
Sbjct: 465 YLGNKLSCVYPPE 477


>gi|221487611|gb|EEE25843.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii GT1]
          Length = 685

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/398 (28%), Positives = 181/398 (45%), Gaps = 23/398 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F L    
Sbjct: 278 SFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 337

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-------------AKTGVVVAV 107
              A+    +    P+ L +APTRELA+Q+  E                  A T    A 
Sbjct: 338 HAAAQPP-LAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLTSSEDPQRADTKFRTAC 396

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+GF  
Sbjct: 397 VYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEP 456

Query: 168 DIEFILDSSPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
            +  I       R+ L++SAT    +    +     +   ++V  A      +      V
Sbjct: 457 QVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEV 516

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           + +   +   +  +      +  ++FC T+    +  + L     + +A+ G+  Q+ER 
Sbjct: 517 VSSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERD 576

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG KG +
Sbjct: 577 RILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTA 636

Query: 345 VFVIPQN----MQRRAERLFREANVSVVWEPAPSVEAI 378
           +     +     +    R   E   SV  EP   +E I
Sbjct: 637 ISFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKI 674


>gi|237830475|ref|XP_002364535.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|211962199|gb|EEA97394.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii ME49]
 gi|221507408|gb|EEE33012.1| DEAD/DEAH box helicase, putative [Toxoplasma gondii VEG]
          Length = 685

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/398 (28%), Positives = 181/398 (45%), Gaps = 23/398 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   L +  +   T++Q+      L  +D++  AQTGSGKT+ F L    
Sbjct: 278 SFEETGFPTAIQNQLRKMNFAEPTAIQKIGWPTALSGRDMIGIAQTGSGKTLGFLLPGLV 337

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-------------AKTGVVVAV 107
              A+    +    P+ L +APTRELA+Q+  E                  A T    A 
Sbjct: 338 HAAAQPP-LAQGQGPIVLVLAPTRELAMQIRHECMRFTEGLSLASSEDPQRADTKFRTAC 396

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GGV    +  +L+NGA I++ TPGRL D +     N+  +  +VLDEAD M+D+GF  
Sbjct: 397 VYGGVPRQGQATELRNGAEILIATPGRLIDFLDLGVTNLKRVSYIVLDEADRMMDMGFEP 456

Query: 168 DIEFILDSSPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
            +  I       R+ L++SAT    +    +     +   ++V  A      +      V
Sbjct: 457 QVRKIFSQVRPDRQTLLWSATWPKEVRGLASEFCRTRVVKLQVGKADLQANANVTQRIEV 516

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           + +   +   +  +      +  ++FC T+    +  + L     + +A+ G+  Q+ER 
Sbjct: 517 VSSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQLCRELRYRQLRALAIHGDKEQRERD 576

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L   R G   + +ATDVA+RG+D+ D++ VI+ ++  N E+ +HR GRTGRAG KG +
Sbjct: 577 RILHDFRKGDCEILLATDVASRGLDIQDVKFVINYDVPKNIESYIHRIGRTGRAGNKGTA 636

Query: 345 VFVIPQN----MQRRAERLFREANVSVVWEPAPSVEAI 378
           +     +     +    R   E   SV  EP   +E I
Sbjct: 637 ISFFQYDFYSPEKVTMARKICEVMRSVGQEPPADLEKI 674


>gi|146104369|ref|XP_001469806.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074176|emb|CAM72918.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
          Length = 571

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 192/379 (50%), Gaps = 13/379 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F+ +   PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + 
Sbjct: 102 ITEFDMLTAVPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVP 161

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             + +  +         P+ + +APTRELA Q+ +E   +  ++ +      GG     +
Sbjct: 162 ALAHIALQEP-LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQS-IRCGCIYGGAPKGPQ 219

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I     
Sbjct: 220 LGLLRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIR 279

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QK+ VR+N+ S     + D+    +L + + + + + 
Sbjct: 280 PDRQTLMFSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELK 339

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  H  +  ++FC T+ +       L  +    +A+ G+  Q++R   L+  R     
Sbjct: 340 RLMERHRNQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRL 399

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
             +ATDVAARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  +  
Sbjct: 400 CVVATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLN 459

Query: 355 -----RAERLFREANVSVV 368
                +   L   A   V 
Sbjct: 460 ASTVFQLVELVERAGQEVP 478


>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 536

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 197/396 (49%), Gaps = 23/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 54  LSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 113

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 114 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 173

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF D
Sbjct: 174 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDMSQLQILVLDEADRMLDMGFID 233

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DI+ I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I        
Sbjct: 234 DIDTIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVD 293

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 294 DRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 353

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 354 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 413

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           ++    Q   +R+ R     +   P   VE    R 
Sbjct: 414 LVHHAEQGALKRIERFVRTPL---PVNVVEGFEPRK 446


>gi|161505568|ref|YP_001572680.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189040035|sp|A9MJ29|RHLB_SALAR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|160866915|gb|ABX23538.1| hypothetical protein SARI_03738 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 421

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQVTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
          Length = 617

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 196/425 (46%), Gaps = 19/425 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 111 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFR 170

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++  
Sbjct: 171 PKRV---FATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 227

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ ++
Sbjct: 228 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 287

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  +  L K      +R++     R+   +    V +  +   N     +++   
Sbjct: 288 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 347

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       IAT
Sbjct: 348 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 407

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +  + +   + + +
Sbjct: 408 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 467

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    +     P    ++            +   I   E +   V+ A+ D   +    +
Sbjct: 468 KVGSKLKSRVIPEQSIVK------------WSQIIDEMEDQYSAVISAERDERALRKAEM 515

Query: 422 RIHRA 426
              +A
Sbjct: 516 EFAKA 520


>gi|147902341|ref|NP_001084744.1| hypothetical protein LOC414715 [Xenopus laevis]
 gi|46329511|gb|AAH68907.1| MGC83105 protein [Xenopus laevis]
          Length = 638

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 111/420 (26%), Positives = 213/420 (50%), Gaps = 13/420 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +++ +   +A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF +     +  
Sbjct: 150 DSVNENTLKAITEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELIY- 208

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    L ++PTRELA+Q    L+ L A       + +GG +   E + L NG
Sbjct: 209 -KLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANG 267

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH++        +L+ +V+DEAD +L++GF  +++ I++  PK+R+ +
Sbjct: 268 VNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTM 327

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LA+   K         ++++ + +D      V+     R   +   L+
Sbjct: 328 LFSATQTRKVEDLARISMKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFTFLK 387

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + 
Sbjct: 388 KNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLC 447

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R
Sbjct: 448 TDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGFL-R 505

Query: 359 LFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             ++A V +         +  I +   +++++   +L     +  K        H  ++I
Sbjct: 506 YLKQAKVPLSEFEFSWSKISDI-QTQVEKLIEKNYYLHKSAQEAYKAYIRAYDSHSHKQI 564


>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 621

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 143/484 (29%), Positives = 220/484 (45%), Gaps = 46/484 (9%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E G     ++QE  L   L  +D++  A+TG+GKT+ FG+ L  
Sbjct: 98  TFAELGVRPEIVSALAEVGIERTFAIQELTLPLALAGEDLIGQARTGTGKTLGFGVPLLQ 157

Query: 61  TLLAENDRFS----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            ++   +R +              P AL + PTREL VQV ++L       G+ V    G
Sbjct: 158 RIVPPAERPAATAEGEAADRTKDVPQALVVVPTRELCVQVAQDLTDAGRDLGIRVTAIYG 217

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   +   L+ G  +VVGTPGRL D    + L +  +  +VLDEADEMLDLGF  D+E
Sbjct: 218 GRAYEPQLNALRKGVDVVVGTPGRLLDLAEQRHLALGRVGVLVLDEADEMLDLGFLPDVE 277

Query: 171 FILDSSPKKRRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            IL   P++R+ ++FSAT+   I   + A   +   +R   + +   H            
Sbjct: 278 RILRMLPEERQTMLFSATMPGPIIALSRAFLNRPTHIRAEESDQGSIHERTKQHVYRAHA 337

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            D+   +  +L+       ++F  T+ +V R    LAE  F   A+ G+L Q  R  AL+
Sbjct: 338 MDKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGAREQALR 397

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG++G++V ++
Sbjct: 398 AFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEGVAVTLV 457

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
             +   R + +  E  + +  EP  +                              D L 
Sbjct: 458 DWDEMPRWKLVSDELGLGID-EPVET--------------------------YSTSDHLY 490

Query: 409 AKHDPEKIAAG---FLRIHRAGLCAPEEITPVSLV-SGRDRFRDDS-RAFKVGGGSRDNF 463
              D    A G     +  RAGL A    T      +GR R RD+  R  +    +R   
Sbjct: 491 TDLDIPTDATGRLPLSKRTRAGLSAEYVDTEGDHQGAGRRRNRDEGARRPRKASRARTRT 550

Query: 464 KGSS 467
           +G  
Sbjct: 551 RGGV 554


>gi|322374632|ref|ZP_08049146.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
 gi|321280132|gb|EFX57171.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C300]
          Length = 447

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +  
Sbjct: 3   FKKFQ-FKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D      +  A+  AP+RELA Q+ +    + A + V V V           + 
Sbjct: 62  QLDETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S P
Sbjct: 116 EKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  
Sbjct: 176 KDLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L     +V  + G+++ +ER   +  +++     
Sbjct: 236 LTQLMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             ++++D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R ++RA          
Sbjct: 400 LVKKKKKKVKPGYKKKIKWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|296394809|ref|YP_003659693.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296181956|gb|ADG98862.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 452

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 209/448 (46%), Gaps = 7/448 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  PQ I  AL++ G      +Q A L P L  +DVL    TGSGKT+ FGL + +
Sbjct: 5   TFASLGVPQPIVSALAKAGVTAPFPIQAAALPPALEGRDVLGRGPTGSGKTLTFGLPMLA 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +  S    P  L + PTRELA QV   L  L A  G+  A  +GG+S+ R+  +
Sbjct: 65  RL---ANGASKPRKPRGLVLVPTRELAAQVASALTPLAASVGLRTASVVGGLSMQRQIDE 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  ++V TPGRL DH+    + +  +    LDEAD+M D+GF   +  ILD +PKK 
Sbjct: 122 LARGVDVLVATPGRLADHLAQGTVVLDEVSVTALDEADQMADMGFLPQVVKILDRTPKKG 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + Y  +    + A      S +++  + V    +    V    
Sbjct: 182 QRLLFSATLDGQVDKLVRRYLDNPATCSTAPAAASVSTMEHHMLFVDQEQKKL--VVTEI 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R TK L        A+ G  +Q  R+  L+  + G   V +A
Sbjct: 240 AAREGRTILFVHTKHGADRLTKRLRAVGVSAAAIHGGKAQNNRTRTLEAFKSGDVAVLVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+ +  ++LV+H +  ++P++ LHR+GRT RAG  G+ + ++    +R AE + 
Sbjct: 300 TNVAARGVHIDGVDLVVHVDPPADPKDYLHRAGRTARAGESGVVITLVTPAERRDAEAMA 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R A V V   P  + +A   R +       + L +                   + AAG+
Sbjct: 360 RAAGVVVKGVPVRAGDAELVRVSGARQPSGVALVAAAAPAPSTPRKPARTRSVRQAAAGW 419

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD 448
              H+ G  AP           R   R 
Sbjct: 420 APRHKRGSAAPVGGAQPPAARSRSGARR 447


>gi|238765157|ref|ZP_04626090.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
 gi|238696647|gb|EEP89431.1| ATP-dependent RNA helicase rhlB [Yersinia kristensenii ATCC 33638]
          Length = 428

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|227504305|ref|ZP_03934354.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
 gi|227198953|gb|EEI79001.1| possible ATP-dependent RNA helicase [Corynebacterium striatum ATCC
           6940]
          Length = 463

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 119/371 (32%), Positives = 180/371 (48%), Gaps = 5/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  PQ I   L+++G      +Q+A +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPQEIVRVLNKQGITEPFPIQQAAIPDALAGKDVLGRGPTGSGKTFTFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S  + P AL + PTRELA Q+   L+      G+ V   +GGV+++   
Sbjct: 61  LTRLTHTGA--SKPARPRALVLTPTRELATQIHDRLDEPANALGLRVLSVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L++  +    LDEAD M D+GF   +  ++  +PK
Sbjct: 119 RSLARPVDLLVATPGRAQDLINQGKLSLDDVAITALDEADHMADMGFLPQVRKLMALTPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L+FSAT+   +  L K +    V  + A        + +  V V   D  N +V  
Sbjct: 179 KGQRLLFSATLDGDVDKLVKQFMHSPVTHSTAPVEAAVDTMTHHLVFVGDRDSRNDVVVR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L       + L G+  Q  R+ A++   DG   V 
Sbjct: 239 IAAREGK-TILFMRTKHGVDRQAKKLRRVGINALPLHGDKGQGARTKAIEGFADGSVPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +    +
Sbjct: 298 VATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGASGAVVTLVMDQQRDEVAK 357

Query: 359 LFREANVSVVW 369
           L ++A V    
Sbjct: 358 LIKKAGVKAFE 368


>gi|322503578|emb|CBZ38664.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 571

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 192/379 (50%), Gaps = 13/379 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F+ +   PQ +   L E+G+   T +Q    +  L  +D++  A+TGSGKT+AF + 
Sbjct: 102 ITEFDMLTAVPQYLKAKLLEQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVP 161

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
             + +  +         P+ + +APTRELA Q+ +E   +  ++ +      GG     +
Sbjct: 162 ALAHIALQEP-LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQS-IRCGCIYGGAPKGPQ 219

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G HI+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I     
Sbjct: 220 LGLLRQGVHILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIR 279

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QK+ VR+N+ S     + D+    +L + + + + + 
Sbjct: 280 PDRQTLMFSATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELK 339

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  H  +  ++FC T+ +       L  +    +A+ G+  Q++R   L+  R     
Sbjct: 340 RLMERHRNQRVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRL 399

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
             +ATDVAARG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  +  
Sbjct: 400 CVVATDVAARGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLN 459

Query: 355 -----RAERLFREANVSVV 368
                +   L   A   V 
Sbjct: 460 ASTVFQLVELVERAGQEVP 478


>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
 gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
          Length = 472

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 130/445 (29%), Positives = 209/445 (46%), Gaps = 22/445 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +DV+  A+TGSGKT AF L + 
Sbjct: 46  KSFKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIGLAETGSGKTAAFALPIL 105

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +            L +APTRELA Q+  ++E L +   V  AV +GG+ +  +  
Sbjct: 106 QALMDKPQSM------FGLVLAPTRELAYQISEQVEALGSLISVRCAVIVGGMDMVSQAI 159

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   PK
Sbjct: 160 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPK 219

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D   V 
Sbjct: 220 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQNYLFIPHKYKDIYFVY 279

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ IVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 280 LLNEFPGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNI 339

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q      +
Sbjct: 340 LVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGHAFSLVTQFDIEIWQ 399

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+      +         E +            +  D +   ++  +  +   H+     
Sbjct: 400 RIEGALGKTFDEYKTEKEEVM------------VLSDRVSEAQRHAITEMKELHENRGKK 447

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG 442
              LR  R G  A      +    G
Sbjct: 448 GATLRNRRTGNGAKRGRDEMDREEG 472


>gi|46580391|ref|YP_011199.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449808|gb|AAS96458.1| ATP-dependent RNA helicase RhlE [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311233634|gb|ADP86488.1| DEAD/DEAH box helicase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 462

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  AL   GY   T VQ   + P L  +DVL  A TG+GKT AF L +  
Sbjct: 2   TFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPMLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+       P  A  AL +APTRELA Q    +  L + + +      GGV V  +   
Sbjct: 62  RLMD-----GPRGAVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALR 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVG PGRL DHIR   L++S L+ +VLDE D + DLGF  D+  +L   P   
Sbjct: 117 LRAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATC 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+  A+  LA                +  S + +    V    R   +   LR
Sbjct: 177 QRMLFSATMPDAVRVLAAEA-LRQPVTVQVDAVQPASTVHHALYPVPAHLRTPLLKTFLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VF  TR    R  + L    F V  L G+LSQ+ R  AL+  RDGR  V +A
Sbjct: 236 SGPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  V++ ++ S  +  +HR GRTGRA R G ++  +    + +   + 
Sbjct: 296 TDVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRNIE 355

Query: 361 REANVSVVWEPAPSVE 376
           R     +  E     +
Sbjct: 356 RVLGTVIPRERLADFD 371


>gi|88861236|ref|ZP_01135868.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
 gi|88816717|gb|EAR26540.1| ATP-dependent RNA helicase [Pseudoalteromonas tunicata D2]
          Length = 422

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 180/365 (49%), Gaps = 6/365 (1%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   NI   +   L+  G+   T +Q   L   + ++D+   AQTG+GKT+AF  A  
Sbjct: 9   KKFADFNIAPEVIAGLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKTLAFLTATC 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL  +        P AL +APTRELAVQ+ ++ + L     + + +  GG    ++  
Sbjct: 69  HHLLQSSK--GQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEEYEKQLA 126

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I++GT GRL D  +    +++ ++ VVLDEAD M DLGF  DI ++    P  
Sbjct: 127 QLEKGVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLFRRMPDA 186

Query: 180 RRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + L   FSAT+S  +  LA  +  + + V +    +    I       A  D+   ++ 
Sbjct: 187 TQRLNLLFSATLSYRVQELAFEHMTNPIHVQVEPSQKTGKRIVEELFHPAQVDKIPLLLT 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+     + AIVF +T+         L     +V  L+G+++Q++R + L+    G    
Sbjct: 247 IIEEEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFTAGNLDF 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ +P++  V + +L  + E+ +HR GRTGRAG  G ++    +      +
Sbjct: 307 LVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQYAYNLQ 366

Query: 358 RLFRE 362
            +   
Sbjct: 367 PIEEY 371


>gi|95930869|ref|ZP_01313600.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
 gi|95133111|gb|EAT14779.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
          Length = 463

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 213/401 (53%), Gaps = 12/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY ++T +Q   L   L  +DV+   +TGSGKT AFGL L   L  + 
Sbjct: 11  LQPALLKNLQSIGYAHMTPIQAQSLPHILAGRDVIGQGKTGSGKTAAFGLGLLQKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +E+  L      + V    GG+    +   L++GA
Sbjct: 71  ------FHVQALVLCPTRELADQVAKEIRKLARTIHNIKVLTLCGGMPFGPQLGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ +H+R   L + +L  +VLDEAD ML++GF++ ++ I+D +P+ R+ L+F
Sbjct: 125 HIIVGTPGRIEEHVRKGALKLDNLTLLVLDEADRMLEMGFQEALDAIIDQTPQTRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNILRYHGA 244
           SAT    I ++A    K  V V + + +       +   +    +DR  A+  +LRY+  
Sbjct: 185 SATFPRQIESIAGRVMKTPVMVQVEATHDSAVITQHFYEVADDTADRQQALRRLLRYYQP 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +A+VFC+T+         L EH F  +AL G+L Q+ER  +L    +G A + +ATDVA
Sbjct: 245 TSAVVFCNTKQDTRDVADDLREHGFSALALHGDLEQRERDQSLVRFSNGSASILVATDVA 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ V +  ++ + E  +HR GRTGRAG  GM+  +       + ERL +  +
Sbjct: 305 ARGLDIEALDAVFNYHIARDTEVHVHRIGRTGRAGSHGMACSLYSAKEHFKVERLAKFLD 364

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            S+  EP P        + Q ++Q  +    I   +++ + 
Sbjct: 365 QSLTGEPLPEPSD----ETQPVMQPAMATLQIDSGKRQKIR 401



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%)

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                          +   +  G +QK     ++  L    GI    +G I V P+  +V
Sbjct: 373 PEPSDETQPVMQPAMATLQIDSGKRQKIRPGDILGALTGGDGIRGDDVGKITVFPNWAYV 432

Query: 512 EVSAD 516
            V  +
Sbjct: 433 AVKRE 437


>gi|260799746|ref|XP_002594845.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
 gi|229280082|gb|EEN50856.1| hypothetical protein BRAFLDRAFT_124435 [Branchiostoma floridae]
          Length = 724

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 141/390 (36%), Gaps = 18/390 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L   GY   T +Q   +   L+ +++L  A TGSGKT AF L +   L     R  
Sbjct: 221 ILTNLQGLGYEEPTPIQMQAIPLMLQRREILACAPTGSGKTAAFILPILHHL-----REP 275

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 A+ ++PTRELA Q     + L    G             ++          ++ 
Sbjct: 276 RRQGFRAVVVSPTRELAKQTFTWFQRLGEGRGFRTYYIEKPAQAAKKFGPNSAKKFDILV 335

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDDIEFILDSSPKKRRM 182
           T      ++  +   I  L +V     DE              +  + +    S   RR 
Sbjct: 336 TTPNRLVYMLKQDPPIVSLHSVEWLVVDESDKLFEEGKQGFRDQLGVIYQACDSSHVRRA 395

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +  +            N          A  +   +       + + S +  A+  ++R  
Sbjct: 396 MFSATFAYDVEQWCKVNLDNVVTVSIGARNSAVDTVEQQLLFVGSESGKLLAMRELVRKG 455

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  ++         L      V  +  + +Q +R N ++  R G+  V I T+
Sbjct: 456 LTPPVLIFVQSKERAKELFHELIYDGINVDVIHADRTQTQRDNTVKCFRTGKIWVLICTE 515

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           +  RGID   + LVI+ +  ++  + +HR GRTGRAGR G ++    ++       +   
Sbjct: 516 LMGRGIDFKGVNLVINYDFPTSAVSYIHRIGRTGRAGRPGKALTFFTEDDIVHLRSIANV 575

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
            REA   V        +A R+    R L+ 
Sbjct: 576 MREAGCEVPEYMLELKKANRKER--RFLEK 603


>gi|189239856|ref|XP_974261.2| PREDICTED: similar to CG6418 CG6418-PB [Tribolium castaneum]
          Length = 699

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 182/370 (49%), Gaps = 5/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A+ +  Y + T +Q   +   L+ +DVL  AQTGSGKT AF   L   +  +
Sbjct: 237 NFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKHVSTQ 296

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P AL +APTRELA+Q+  E +       + V    GG S   +   L+ GA
Sbjct: 297 PP-VTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALKEGA 355

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR+ DH++G   N+  +  +VLDEAD M +LGF   +  + +     R+ L+F
Sbjct: 356 DIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLF 415

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           SAT    I  LAK+   D VR++     + + D+  R +L+         +         
Sbjct: 416 SATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVELLS 475

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A + +VF + +    +    L    F+ + L G++ Q ER+  +   +     + +ATDV
Sbjct: 476 AGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDV 535

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V++ +++ + +   HR GRTGRAG +G +  +I    +     + +  
Sbjct: 536 AARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHIVK-- 593

Query: 364 NVSVVWEPAP 373
           N+    +  P
Sbjct: 594 NLEAAHQDVP 603


>gi|157144489|ref|YP_001451808.1| ATP-dependent RNA helicase SrmB [Citrobacter koseri ATCC BAA-895]
 gi|157081694|gb|ABV11372.1| hypothetical protein CKO_00206 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 120/399 (30%), Positives = 191/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSATISP--AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT+          +  +         S   +     +      +  +   +V
Sbjct: 181 RKQTMLFSATLEGGAINDFAERLLEDPVEVSATPSTRERKKIHQWYYRADDIQHKTALLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L E       L GE+ Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLREAGINNCYLEGEMVQGKRNEAIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARGID+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNFDMPRSSDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 GKVGRYIEETLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|270012072|gb|EFA08520.1| hypothetical protein TcasGA2_TC006173 [Tribolium castaneum]
          Length = 702

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 182/370 (49%), Gaps = 5/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A+ +  Y + T +Q   +   L+ +DVL  AQTGSGKT AF   L   +  +
Sbjct: 237 NFDDKLLKAIIKAEYTSPTPIQAQAVPCALQGRDVLGIAQTGSGKTAAFLWPLLKHVSTQ 296

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    P AL +APTRELA+Q+  E +       + V    GG S   +   L+ GA
Sbjct: 297 PP-VTAGEGPAALILAPTRELAIQIYNEAKKFARVYDLTVVCAYGGGSKWEQSLALKEGA 355

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR+ DH++G   N+  +  +VLDEAD M +LGF   +  + +     R+ L+F
Sbjct: 356 DIVVATPGRIIDHVKGGATNLQRVTFLVLDEADRMFELGFEPQVRSVCNHVRPDRQTLLF 415

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--G 243
           SAT    I  LAK+   D VR++     + + D+  R +L+         +         
Sbjct: 416 SATFRKRIEKLAKDALNDPVRISQGITGQANEDVTQRVLLMENQQLKRDWLVNNLVELLS 475

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A + +VF + +    +    L    F+ + L G++ Q ER+  +   +     + +ATDV
Sbjct: 476 AGSVLVFVTKKVDAEQLANDLKVKEFECLLLHGDIEQAERNKVITAFKKKECSLLVATDV 535

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P +  V++ +++ + +   HR GRTGRAG +G +  +I    +     + +  
Sbjct: 536 AARGLDIPHIRTVVNYDIARDIDTHTHRIGRTGRAGNQGTAYTLITPKDKEFVGHIVK-- 593

Query: 364 NVSVVWEPAP 373
           N+    +  P
Sbjct: 594 NLEAAHQDVP 603


>gi|119475471|ref|ZP_01615824.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451674|gb|EAW32907.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
           HTCC2143]
          Length = 459

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P      L + GY  +T +Q+  L   L   D++  A+TGSGKT AFG+ L + +   
Sbjct: 9   DLPPGQLANLQQLGYEKMTPIQQQSLPLVLAGSDIIAKAKTGSGKTAAFGIGLLTKINPR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
           +           + I PTREL+ QV  E+  L      + V V  GG S+  +   L++G
Sbjct: 69  D------FGTQTMVICPTRELSTQVATEIRRLARYQQNIKVVVLCGGQSIGPQIGSLEHG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+R K L++S L  +VLDEAD MLD+GF  DIE I+   P  R+ L+
Sbjct: 123 AHIVVGTPGRIKDHLRKKTLSLSRLGILVLDEADRMLDMGFYSDIETIIHEMPDDRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I TL+ ++Q+  V +++ S          +  +    +R   +  +L  +  
Sbjct: 183 FSATYPDKIKTLSSSFQRSPVEISVESVRGNEKI-HQQLFICDKRERLAGLQRLLMNYPI 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++A++FC+T   V      L +      A+ G+L Q++R   L    +    + +ATDVA
Sbjct: 242 ESAVIFCNTIKLVKEVCDYLVDIGISAKAIHGDLEQRDRDQVLIQFANHSCSLLVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ DL  VI+ EL    +  +HR GRTGRAG++G++  +   + + R + +     
Sbjct: 302 ARGLDIEDLPAVINFELPREADVYIHRIGRTGRAGKEGLAFSLFTDSEKYRFDAISTLQE 361

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             + +E    ++ I     +++   P+    I G  K    
Sbjct: 362 NKLNFESIGVLKDI----DRQLAAPPMVTLCISGGRKDKFR 398



 Score = 63.1 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +S G K K     ++  L   +G++   IG I V   +++V +     +   R
Sbjct: 382 PPMVTLCISGGRKDKFRPGDIVGALTGEAGMDGSVIGKISVLDFVSYVAIERHAANDALR 441

Query: 524 TVKLDK 529
            ++  K
Sbjct: 442 GLEQGK 447


>gi|293413224|ref|ZP_06655886.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
 gi|291468172|gb|EFF10669.1| ATP-dependent RNA helicase RhlB [Escherichia coli B354]
          Length = 427

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 22  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 81

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 82  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 142 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 201

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 202 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 261

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 262 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 321

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 322 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 381

Query: 364 NVSVV 368
             S+ 
Sbjct: 382 GHSIP 386


>gi|145974735|gb|ABQ00071.1| VASA [Fenneropenaeus chinensis]
          Length = 712

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 180/378 (47%), Gaps = 15/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 276 NLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDN 335

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +     + + 
Sbjct: 336 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHHLKTIH 395

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++        
Sbjct: 396 SGCHILVATPGRLLDFVEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTA 455

Query: 183 L----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                MFSAT    I  LA  +  + + V + S    ++D+    + V   ++   +V +
Sbjct: 456 DRITLMFSATFPNEIQELASAFLNNYLFVVVGSVGAANTDVKQEVLCVPKFEKKAKLVEM 515

Query: 239 LRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 516 CEEILINADDEKILVFVEQKRVADFVGTYLCEKNFRATTMHGDRYQAQREQALTDFRTGV 575

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + +AT VAARG+D+  + +V++ +L    +  +HR GRTGR G +G+S+    +    
Sbjct: 576 FNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGLSISFYDEEADV 635

Query: 352 -MQRRAERLFREANVSVV 368
            + +   ++  EA  +V 
Sbjct: 636 CLTKDLVKVLSEAKQTVP 653


>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|160358659|sp|A6RW56|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|150848381|gb|EDN23574.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 486

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 197/374 (52%), Gaps = 10/374 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 60  KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL 119

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   D+  P      L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +  
Sbjct: 120 QALL---DKPQPLFG---LVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSI 173

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 174 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPR 233

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSATIS  + +L +   KD +RV+I+S   Q         + + L  +D  ++ 
Sbjct: 234 ERRTYLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLIHKDTYLIY 293

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++AI+F  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 294 LLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREI 353

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ ++  + +  +HR GRT RAG+ G ++ V+ Q       
Sbjct: 354 LVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEIFM 413

Query: 358 RLFREANVSVVWEP 371
           R+        V  P
Sbjct: 414 RIEAALGKKQVEYP 427


>gi|15930131|gb|AAH15505.1| DDX42 protein [Homo sapiens]
 gi|23336904|tpg|DAA00077.1| TPA_exp: SF3b125 DEAD-box protein [Homo sapiens]
 gi|158259277|dbj|BAF85597.1| unnamed protein product [Homo sapiens]
          Length = 819

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 141 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 200

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 201 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 259

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 260 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 319

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 320 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 379

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 380 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 439

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 440 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 496


>gi|193071050|ref|ZP_03051977.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
 gi|192955637|gb|EDV86113.1| ATP-dependent RNA helicase RhlB [Escherichia coli E110019]
          Length = 421

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|332998278|gb|EGK17880.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-272]
          Length = 421

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|255723333|ref|XP_002546600.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
 gi|240130731|gb|EER30294.1| hypothetical protein CTRG_06078 [Candida tropicalis MYA-3404]
          Length = 572

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/423 (26%), Positives = 201/423 (47%), Gaps = 12/423 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE+  + +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +    
Sbjct: 114 LFEDADLSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 173

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 174 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARELMQYHSQTCGIVIGGADRRQEATK 231

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +++V TPGRL DH++       S+LKA+V+DEAD +L++GF D+++ I+   P +
Sbjct: 232 LAKGVNLLVATPGRLLDHLKNTPGFVFSNLKALVIDEADRILEIGFEDEMKQIIKILPNE 291

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R  M  +            ++       + V    +      ++   V+     R   +
Sbjct: 292 DRQSMLFSATQTTKVEDLARMSLRPGPLYINVVPDKDVSTADGLEQGYVVCDSDKRFLLL 351

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + + 
Sbjct: 352 FSFLKRNVKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ 411

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +  +   
Sbjct: 412 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELG 471

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + A V +     PS + A  +    ++++    L+    D  +      A H  
Sbjct: 472 FL-RYLKAAKVPLNEYEFPSNKIANIQSQLTKLIKTNYLLNQSAKDGYRAYLQAYASHGL 530

Query: 414 EKI 416
           + +
Sbjct: 531 KTV 533


>gi|325916975|ref|ZP_08179217.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536826|gb|EGD08580.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 458

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/410 (32%), Positives = 199/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPREAARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIT 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|323346404|gb|EGA80692.1| Ded1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 608

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 156 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 215

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 216 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 275

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 276 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 335

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 336 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 395

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 396 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 455

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 456 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 515

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 516 KGLHEILTEANQEVP 530


>gi|323307275|gb|EGA60555.1| Ded1p [Saccharomyces cerevisiae FostersO]
          Length = 605

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 153 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 212

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 213 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 272

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 273 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 332

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 333 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 392

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 393 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 452

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 453 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 512

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 513 KGLHEILTEANQEVP 527


>gi|323302935|gb|EGA56739.1| Ded1p [Saccharomyces cerevisiae FostersB]
          Length = 604

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 152 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 211

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 212 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 271

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 512 KGLHEILTEANQEVP 526


>gi|312130721|ref|YP_003998061.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311907267|gb|ADQ17708.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 400

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 124/402 (30%), Positives = 204/402 (50%), Gaps = 19/402 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +   +    Y + T +QE  +   L +KD+L  AQTG+GKT AF + + 
Sbjct: 1   MKFEELNLHPDVKNGIEAMNYQDTTPIQEMAIPLVLEKKDLLACAQTGTGKTAAFLIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S +  E            L + PTRELA Q+  ++E L    GV      GG       +
Sbjct: 61  SLIREEG-----GDQLSTLILVPTRELAKQIDEQVEGLGYFVGVTSLAIYGGGKGENWGQ 115

Query: 120 DL---QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                  GA I++ TPGRL  H++   +    +K +VLDEAD+MLD+GF DDI FI+   
Sbjct: 116 QRTALIEGADIIIATPGRLLAHMQSGKIKFDTIKRLVLDEADKMLDMGFSDDINFIIKHL 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+R+ LMFSAT+ P I T A+N      +    S ++    ID R  + A   +   + 
Sbjct: 176 PKERQTLMFSATMPPKIRTFARNI-LKNPKEISLSVSKPAEKIDQRFYMAADEQKLALLN 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L     +  I+F S R+ + +  K L+ +  +   +S ++ Q ER  AL+  + G+  
Sbjct: 235 HLLSPFEGQKIIIFTSQRSMIHKILKDLSRNKLKAKGVSSDIEQDEREVALRDFKAGKFN 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDV +RGID+ +L LV++ ++  + E+ +HR GRT RA  +G+S+  + +  ++  
Sbjct: 295 ILVATDVLSRGIDISNLNLVVNFDVPRDAEDYIHRIGRTARADTEGVSITFLTEKDRKAV 354

Query: 357 ER----LFREANVSVVWE-----PAPSVEAIRERDAQRILQD 389
           +     L +E  V  + E     PAP  +  +    ++  + 
Sbjct: 355 KDIEALLEKEVEVQRITENLGLGPAPEFKVYKAPKPRKFFKK 396


>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 396

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I  A+SE GY   T++Q   +   L  +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSQPITTAISELGYDKPTNIQNKAIPVILDGEDLIAAAQTGTGKTASFVLPILEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA+QV ++++       +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRIRALILAPTRELAIQVEQKVQEYGKHLNLTSLAMYGGVDEQPQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    ++ +VLDEAD MLD+GF +DI  ILD  P   + L+FS
Sbjct: 126 ILVATPGRLLDMYAKRAVYFEEVEILVLDEADRMLDMGFIEDINKILDRLPTDIQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    +   ++IA+      +I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKTAVHNPYEISIAANQASKKNIEQWLITVDKDMKSALLSHLIKENEWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   +  A     SQ  RS  L+  + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLLEDFKAGKIKYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA  +G ++  + ++  +    +       
Sbjct: 306 GIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 LERREVEGFE 375


>gi|259149685|emb|CAY86489.1| Ded1p [Saccharomyces cerevisiae EC1118]
          Length = 604

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 152 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 211

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 212 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 271

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 512 KGLHEILTEANQEVP 526


>gi|238750653|ref|ZP_04612152.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
 gi|238711043|gb|EEQ03262.1| ATP-dependent RNA helicase rhlB [Yersinia rohdei ATCC 43380]
          Length = 428

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQITGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P  +KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVEKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|218707416|ref|YP_002414935.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMN026]
 gi|293407410|ref|ZP_06651330.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298383150|ref|ZP_06992744.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300900676|ref|ZP_07118829.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|226739535|sp|B7NF85|RHLB_ECOLU RecName: Full=ATP-dependent RNA helicase rhlB
 gi|218434513|emb|CAR15440.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|291425521|gb|EFE98559.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1412]
 gi|298276386|gb|EFI17905.1| ATP-dependent RNA helicase RhlB [Escherichia coli FVEC1302]
 gi|300355825|gb|EFJ71695.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
          Length = 421

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|160380641|sp|A6ZP47|DED1_YEAS7 RecName: Full=ATP-dependent RNA helicase DED1
 gi|151945294|gb|EDN63537.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
 gi|190407515|gb|EDV10782.1| hypothetical protein SCRG_01592 [Saccharomyces cerevisiae RM11-1a]
 gi|207341041|gb|EDZ69208.1| YOR204Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269590|gb|EEU04872.1| Ded1p [Saccharomyces cerevisiae JAY291]
 gi|323335425|gb|EGA76711.1| Ded1p [Saccharomyces cerevisiae Vin13]
 gi|323352139|gb|EGA84676.1| Ded1p [Saccharomyces cerevisiae VL3]
          Length = 604

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 152 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 211

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 212 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 271

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 512 KGLHEILTEANQEVP 526


>gi|148613135|gb|ABQ96192.1| vasa [Melipona scutellaris]
 gi|205318889|gb|ACI02436.1| vasa [Melipona quadrifasciata]
          Length = 624

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 17/385 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   +  ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT AF + +
Sbjct: 193 IESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPI 252

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  GG SV 
Sbjct: 253 INTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVM 312

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   IE ++D 
Sbjct: 313 HQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDH 372

Query: 176 SPK----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  +R+ LMFSAT    +  LA+ +  + + + +       SD++     VA + +
Sbjct: 373 ETMVPLGERQTLMFSATFPDEVHHLARRFLNNYLFLAVGIVGGARSDVEQNFCEVARNKK 432

Query: 232 DNAIVNILRYHGAKNAI----VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            + +  IL        +    VF   +         L+E+ +   ++ G+  Q++R  AL
Sbjct: 433 KDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEAL 492

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +   
Sbjct: 493 ADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSF 552

Query: 348 IPQNM----QRRAERLFREANVSVV 368
                    +    R+ ++AN SV 
Sbjct: 553 FDPEEDAPLRGDLVRILKQANQSVP 577


>gi|308808320|ref|XP_003081470.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116059933|emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 777

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 120/470 (25%), Positives = 213/470 (45%), Gaps = 12/470 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +       +   G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +  A  L   
Sbjct: 172 ELSAPTMRGIESMGFTTMTEVQARCVPPLLAGKDVLGAARTGSGKTLAFLVPSAELLYH- 230

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    + ++PTRELA+Q+    + L  K      + IGG +   E   L  G 
Sbjct: 231 -AKFMPRNGTGVMVLSPTRELALQIYNVAQQLMEKHSQTHGLIIGGANRRAEAERLIKGV 289

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++       S LK  V+DEAD MLD+GF +++  I+   PK+R+ ++
Sbjct: 290 NLLVATPGRLLDHMQNTRGFTFSSLKVFVMDEADRMLDIGFEEEMRTIVKMLPKERQTML 349

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT +  +  LA+   K  + + +       +   ++    +V    R   +   L+ +
Sbjct: 350 FSATQTTKVEDLARLSLKSPIYIGVDDSRAVSTASGVEQGYCVVPSEQRFLLLFTFLKKN 409

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V  + G+  QQ R+            + + TD
Sbjct: 410 LKKKIMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERGILLCTD 469

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ +I  +   +P+  +HR GRT R    KG ++  +        + L +
Sbjct: 470 VAARGLDIPAVDWIIQYDPPDDPKEYIHRVGRTARGTDGKGRALLFLIPEELAFLKYL-K 528

Query: 362 EANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
            A V +     P+ + A  +   +++++   +L +   D  +   +    H  + +    
Sbjct: 529 AAKVPLNEYEFPTKKIANVQSQLEKLVEKNYYLHTSARDAYRAYILAYNSHTLKDVYNVH 588

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           +   + +  +          ++L S   + R  SR     G      KG+
Sbjct: 589 SLNLVAVASSFGFHKPPKVQLNLDSKASKGRTKSRGEGGPGSDYRRQKGT 638


>gi|17065030|gb|AAL32669.1| RNA helicase, DRH1 [Arabidopsis thaliana]
          Length = 619

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 6/363 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   +   G+   T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  R      P  L ++PTRELA Q+  E       + +      GG     + RD
Sbjct: 219 HL--QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +VA  ++   +  I
Sbjct: 337 QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQI 396

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   A+ G+ SQ ER N L   R GR  V 
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +         + A  
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 359 LFR 361
           L +
Sbjct: 517 LIK 519


>gi|6324778|ref|NP_014847.1| Ded1p [Saccharomyces cerevisiae S288c]
 gi|118411|sp|P06634|DED1_YEAST RecName: Full=ATP-dependent RNA helicase DED1; AltName: Full=DEAD
           box protein 1
 gi|3647|emb|CAA40546.1| Ded1p (Spp81p) [Saccharomyces cerevisiae]
 gi|1420479|emb|CAA99419.1| DED1 [Saccharomyces cerevisiae]
 gi|285815083|tpg|DAA10976.1| TPA: Ded1p [Saccharomyces cerevisiae S288c]
          Length = 604

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 189/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S         
Sbjct: 152 LLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVLSESFKTGPSP 211

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 212 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 271

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 512 KGLHEILTEANQEVP 526


>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 398

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q I +A+ + GY   T++Q   +   LR +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSQPITDAIQQLGYDKPTTIQTKAIPVVLRGEDLIAAAQTGTGKTASFVLPMLEKL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELAVQV  ++        +      GGV    +++ L  G  
Sbjct: 66  GETQRKKRIRGLILTPTRELAVQVEEKIRDYGQHLALTSLAMYGGVDEQAQKQALIEGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + ++   ++ +VLDEAD MLD+GF DDI  ILD  P   + L+FS
Sbjct: 126 ILVATPGRLIDMYGKRAVHFEEVEMLVLDEADRMLDMGFIDDINKILDRLPTDIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKTAVHDPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLIKENDWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++  + L +   +  A     SQ  RS  L+  + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLLEDFKAGKIQYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA  +G ++  + ++  +    +       
Sbjct: 306 GIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERREVEGFE 375


>gi|198429555|ref|XP_002122319.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           isoform 1 [Ciona intestinalis]
          Length = 627

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 115/417 (27%), Positives = 205/417 (49%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +  +A+ + G+ ++  +Q   + P L  +D+L +A+TGSGKT+AF +      L   
Sbjct: 149 VSDLTLKAIEDMGFSHMMEIQAKSIPPLLEGRDLLAAAKTGSGKTLAFLIPAIE--LMYK 206

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTRELA+Q+   L+ L         + +GG +   E + L NG +
Sbjct: 207 LRFMPRNGTGVIVISPTRELAMQIYGVLQDLLKHHCQTYGLIMGGSNRSSEAKKLGNGIN 266

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH    +     +L+ +++DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 267 IIVATPGRLLDHLQNTQEFMFRNLQCLIIDEADRILEVGFEEEMKQIVRLLPKRRQTMLF 326

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  LA+   K         ++ Q + +D       +     R   +   LR +
Sbjct: 327 SATQTKKIEDLARVSLKKMPLYVGVDDSEQSATVDGLEQGYAVCPSEKRFLVLFTFLRRN 386

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L       +++ G   Q +R+       +    + + TD
Sbjct: 387 RDKKVMVFFSSCMSVKFHYELLNYIDLPCMSIHGRQKQTKRTTTFFQFCNADKGILLCTD 446

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++  +  +       L 
Sbjct: 447 VAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGVNGR-GHALLFLRPSELGFLHYL- 504

Query: 361 REANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           R A V V  +E + S  A  +   +R++Q   FL     +  K      A H  + I
Sbjct: 505 RHAKVPVSEFEFSWSKIANIQTQLERLIQKNYFLHKSSQEAYKSYIRAYASHSLKSI 561


>gi|33599198|ref|NP_886758.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33575244|emb|CAE30707.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 574

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 6/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 14  SFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +  +    +       L + PTRELA+QV            G+  A  +GG+    + +
Sbjct: 74  RIAHQPG--NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 131

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  PK+
Sbjct: 132 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 191

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238
           R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I    +    +  +   + ++
Sbjct: 192 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHV 251

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G+ RV 
Sbjct: 252 LRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVL 311

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G +  +     + +  R
Sbjct: 312 VATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRR 371

Query: 359 LFREANVSVVWEPAPSVE 376
           +      S+  E    +E
Sbjct: 372 IEHYIGQSINAEVIAGLE 389


>gi|328873249|gb|EGG21616.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           fasciculatum]
          Length = 397

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 189/374 (50%), Gaps = 11/374 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  ++P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + +
Sbjct: 25  IDSFDGMDLPKDLLRGVYSYGFEKPSAIQQRAITPLAKGYDIIAQAQSGTGKTATFTIGI 84

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S +     +        AL IAPTRELA+Q+ + +  L     +    CIGG  V  + 
Sbjct: 85  LSQINTSIFK------CQALIIAPTRELAIQIQKVVVSLGEYLKIKCYACIGGTKVSDDV 138

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ+G H+VVGTPGR+ + +    +    ++  VLDEADEML  GF+D I  I    P+
Sbjct: 139 QSLQSGVHVVVGTPGRVHEMLSRGVITRESIRIFVLDEADEMLSRGFKDQIYEIFRLLPE 198

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
           K ++ +FSAT++     +   +    V++ +  +      I      + +   + + + +
Sbjct: 199 KIQVGLFSATMTEETLGITTKFMNTPVKILVKKDELTLEGIRQFYVNVGSEQGKFDVLTD 258

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++FC+TR  V   T  L E  F V +  G+   +E    L   R G  RV
Sbjct: 259 LYETLSITQSVIFCNTRRKVDWLTNKLTEQQFTVSSTHGDQKDREG--ILSSFRSGITRV 316

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ ++  N EN +HR GR+GR GRKG+++  I  N Q + +
Sbjct: 317 LITTDLLARGIDVQQVSLVINYDIPGNLENYIHRIGRSGRFGRKGVAINFITNNEQDKIQ 376

Query: 358 RLFREANVSVVWEP 371
            L    N  +   P
Sbjct: 377 ELSTHYNTFIQEMP 390


>gi|16131636|ref|NP_418227.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24115073|ref|NP_709583.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 301]
 gi|26250518|ref|NP_756558.1| ATP-dependent RNA helicase RhlB [Escherichia coli CFT073]
 gi|30064925|ref|NP_839096.1| ATP-dependent RNA helicase RhlB [Shigella flexneri 2a str. 2457T]
 gi|74314294|ref|YP_312713.1| ATP-dependent RNA helicase RhlB [Shigella sonnei Ss046]
 gi|89110237|ref|AP_004017.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|91213300|ref|YP_543286.1| ATP-dependent RNA helicase RhlB [Escherichia coli UTI89]
 gi|110644107|ref|YP_671837.1| ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|117626041|ref|YP_859364.1| ATP-dependent RNA helicase RhlB [Escherichia coli APEC O1]
 gi|157156932|ref|YP_001465261.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|157163253|ref|YP_001460571.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|170022193|ref|YP_001727147.1| ATP-dependent RNA helicase RhlB [Escherichia coli ATCC 8739]
 gi|170083267|ref|YP_001732587.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188493269|ref|ZP_03000539.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|191166123|ref|ZP_03027958.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|191174380|ref|ZP_03035885.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|193066115|ref|ZP_03047170.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194429768|ref|ZP_03062283.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194438673|ref|ZP_03070761.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209921253|ref|YP_002295337.1| ATP-dependent RNA helicase RhlB [Escherichia coli SE11]
 gi|215489108|ref|YP_002331539.1| ATP-dependent RNA helicase RhlB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218556342|ref|YP_002389256.1| ATP-dependent RNA helicase RhlB [Escherichia coli IAI1]
 gi|218560846|ref|YP_002393759.1| ATP-dependent RNA helicase RhlB [Escherichia coli S88]
 gi|218692059|ref|YP_002400271.1| ATP-dependent RNA helicase RhlB [Escherichia coli ED1a]
 gi|218697497|ref|YP_002405164.1| ATP-dependent RNA helicase RhlB [Escherichia coli 55989]
 gi|227888637|ref|ZP_04006442.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237702790|ref|ZP_04533271.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|238902861|ref|YP_002928657.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|253775595|ref|YP_003038426.1| ATP-dependent RNA helicase RhlB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038992|ref|ZP_04873043.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|254163724|ref|YP_003046832.1| ATP-dependent RNA helicase RhlB [Escherichia coli B str. REL606]
 gi|256021478|ref|ZP_05435343.1| ATP-dependent RNA helicase RhlB [Shigella sp. D9]
 gi|256026128|ref|ZP_05439993.1| ATP-dependent RNA helicase RhlB [Escherichia sp. 4_1_40B]
 gi|260846444|ref|YP_003224222.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|293417246|ref|ZP_06659871.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|300818751|ref|ZP_07098958.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300823311|ref|ZP_07103442.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904031|ref|ZP_07121913.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300921514|ref|ZP_07137858.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300923279|ref|ZP_07139328.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300930057|ref|ZP_07145487.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300947363|ref|ZP_07161559.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300955218|ref|ZP_07167613.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300979308|ref|ZP_07174492.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300985808|ref|ZP_07177600.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021429|ref|ZP_07185453.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301028992|ref|ZP_07192149.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301047340|ref|ZP_07194425.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301303674|ref|ZP_07209795.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301325469|ref|ZP_07218952.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301646155|ref|ZP_07246054.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306815182|ref|ZP_07449335.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|307140480|ref|ZP_07499836.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|307313643|ref|ZP_07593263.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309796280|ref|ZP_07690690.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|312971937|ref|ZP_07786111.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|331644514|ref|ZP_08345634.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331649605|ref|ZP_08350687.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331660125|ref|ZP_08361061.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331665426|ref|ZP_08366325.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331670625|ref|ZP_08371462.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331679889|ref|ZP_08380552.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332282712|ref|ZP_08395125.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|67472034|sp|P0A8J8|RHLB_ECOLI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472035|sp|P0A8J9|RHLB_ECOL6 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|67472036|sp|P0A8K0|RHLB_SHIFL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122421788|sp|Q1R4F9|RHLB_ECOUT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123147496|sp|Q0TAU3|RHLB_ECOL5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123615737|sp|Q3YVI4|RHLB_SHISS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040027|sp|B1IWC0|RHLB_ECOLC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040118|sp|A1AHV0|RHLB_ECOK1 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040119|sp|A8A6N4|RHLB_ECOHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040120|sp|A7ZTY2|RHLB_ECO24 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739530|sp|B7MGJ1|RHLB_ECO45 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739533|sp|B7M5C7|RHLB_ECO8A RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739534|sp|B1X9Z4|RHLB_ECODH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739536|sp|B6I4B6|RHLB_ECOSE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797687|sp|B7UMN5|RHLB_ECO27 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797688|sp|B7L8B6|RHLB_ECO55 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797689|sp|B7MR01|RHLB_ECO81 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|259585613|sp|C4ZZ48|RHLB_ECOBW RecName: Full=ATP-dependent RNA helicase rhlB
 gi|26110948|gb|AAN83132.1|AE016769_247 Putative ATP-dependent RNA helicase rhlB [Escherichia coli CFT073]
 gi|1790214|gb|AAC76785.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24054339|gb|AAN45290.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30043186|gb|AAP18907.1| putative ATP-dependent RNA helicase [Shigella flexneri 2a str.
           2457T]
 gi|73857771|gb|AAZ90478.1| putative ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|85676268|dbj|BAE77518.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|91074874|gb|ABE09755.1| putative ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110345699|gb|ABG71936.1| putative ATP-dependent RNA helicase RhlB [Escherichia coli 536]
 gi|115515165|gb|ABJ03240.1| ATP-dependent RNA helicase [Escherichia coli APEC O1]
 gi|157068933|gb|ABV08188.1| ATP-dependent RNA helicase RhlB [Escherichia coli HS]
 gi|157078962|gb|ABV18670.1| ATP-dependent RNA helicase RhlB [Escherichia coli E24377A]
 gi|169757121|gb|ACA79820.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169891102|gb|ACB04809.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488468|gb|EDU63571.1| ATP-dependent RNA helicase RhlB [Escherichia coli 53638]
 gi|190903899|gb|EDV63613.1| ATP-dependent RNA helicase RhlB [Escherichia coli B7A]
 gi|190905357|gb|EDV64991.1| ATP-dependent RNA helicase RhlB [Escherichia coli F11]
 gi|192926212|gb|EDV80851.1| ATP-dependent RNA helicase RhlB [Escherichia coli E22]
 gi|194412180|gb|EDX28487.1| ATP-dependent RNA helicase RhlB [Escherichia coli B171]
 gi|194422477|gb|EDX38476.1| ATP-dependent RNA helicase RhlB [Escherichia coli 101-1]
 gi|209914512|dbj|BAG79586.1| RNA helicase [Escherichia coli SE11]
 gi|215267180|emb|CAS11628.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|218354229|emb|CAV00884.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218363111|emb|CAR00751.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218367615|emb|CAR05399.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218429623|emb|CAR10584.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
 gi|222035482|emb|CAP78227.1| ATP-dependent RNA helicase rhlB [Escherichia coli LF82]
 gi|226838683|gb|EEH70711.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 1_1_43]
 gi|226902961|gb|EEH89220.1| ATP-dependent RNA helicase rhlB [Escherichia sp. 3_2_53FAA]
 gi|227834476|gb|EEJ44942.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|238860046|gb|ACR62044.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|242379313|emb|CAQ34124.1| RhlB, subunit of RhlB, ATP-dependent RNA helicase of the RNA
           degradosome and degradosome [Escherichia coli BL21(DE3)]
 gi|253326639|gb|ACT31241.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975625|gb|ACT41296.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253979781|gb|ACT45451.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|257761591|dbj|BAI33088.1| ATP-dependent RNA helicase RhlB [Escherichia coli O103:H2 str.
           12009]
 gi|260451375|gb|ACX41797.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|281180829|dbj|BAI57159.1| RNA helicase [Escherichia coli SE15]
 gi|281603170|gb|ADA76154.1| putative Superfamily II DNA and RNA helicase [Shigella flexneri
           2002017]
 gi|284923885|emb|CBG36984.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|291431014|gb|EFF04009.1| ATP-dependent RNA helicase RhlB [Escherichia coli B185]
 gi|294489863|gb|ADE88619.1| ATP-dependent RNA helicase RhlB [Escherichia coli IHE3034]
 gi|299878035|gb|EFI86246.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300757|gb|EFJ57142.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308061|gb|EFJ62581.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300317872|gb|EFJ67656.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300398065|gb|EFJ81603.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403983|gb|EFJ87521.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300407959|gb|EFJ91497.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300411582|gb|EFJ94892.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300420424|gb|EFK03735.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300453025|gb|EFK16645.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300462045|gb|EFK25538.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300524097|gb|EFK45166.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300528717|gb|EFK49779.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300840974|gb|EFK68734.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|300847696|gb|EFK75456.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|301075624|gb|EFK90430.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851551|gb|EFM52005.1| ATP-dependent RNA helicase RhlB [Escherichia coli NC101]
 gi|306906624|gb|EFN37136.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|307555908|gb|ADN48683.1| putative ATP-dependent RNA helicase [Escherichia coli ABU 83972]
 gi|307628843|gb|ADN73147.1| ATP-dependent RNA helicase RhlB [Escherichia coli UM146]
 gi|308120162|gb|EFO57424.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|309704219|emb|CBJ03566.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310334314|gb|EFQ00519.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1827-70]
 gi|312948335|gb|ADR29162.1| ATP-dependent RNA helicase RhlB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647775|gb|EFS12222.1| ATP-dependent RNA helicase rhlB [Shigella flexneri 2a str. 2457T]
 gi|315063076|gb|ADT77403.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|315138358|dbj|BAJ45517.1| ATP-dependent RNA helicase rhlB [Escherichia coli DH1]
 gi|315254144|gb|EFU34112.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315284670|gb|EFU44115.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315293136|gb|EFU52488.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315296843|gb|EFU56132.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315618521|gb|EFU99107.1| ATP-dependent RNA helicase rhlB [Escherichia coli 3431]
 gi|320197592|gb|EFW72204.1| ATP-dependent RNA helicase RhlB [Escherichia coli WV_060327]
 gi|320198512|gb|EFW73113.1| ATP-dependent RNA helicase RhlB [Escherichia coli EC4100B]
 gi|323161156|gb|EFZ47074.1| ATP-dependent RNA helicase rhlB [Escherichia coli E128010]
 gi|323173397|gb|EFZ59026.1| ATP-dependent RNA helicase rhlB [Escherichia coli LT-68]
 gi|323182553|gb|EFZ67957.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1357]
 gi|323189497|gb|EFZ74777.1| ATP-dependent RNA helicase rhlB [Escherichia coli RN587/1]
 gi|323380861|gb|ADX53129.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
 gi|323934171|gb|EGB30602.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323943817|gb|EGB39912.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949335|gb|EGB45225.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323954095|gb|EGB49892.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323959037|gb|EGB54706.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323969378|gb|EGB64677.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|324007445|gb|EGB76664.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014725|gb|EGB83944.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324016171|gb|EGB85390.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324115756|gb|EGC09691.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|330908082|gb|EGH36601.1| ATP-dependent RNA helicase RhlB [Escherichia coli AA86]
 gi|331036186|gb|EGI08421.1| ATP-dependent RNA helicase RhlB [Escherichia coli H736]
 gi|331041475|gb|EGI13623.1| ATP-dependent RNA helicase RhlB [Escherichia coli M605]
 gi|331052693|gb|EGI24728.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA206]
 gi|331057324|gb|EGI29313.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA143]
 gi|331062098|gb|EGI34020.1| ATP-dependent RNA helicase RhlB [Escherichia coli TA271]
 gi|331072436|gb|EGI43768.1| ATP-dependent RNA helicase RhlB [Escherichia coli H591]
 gi|332105064|gb|EGJ08410.1| ATP-dependent RNA helicase rhlB [Shigella sp. D9]
 gi|332345760|gb|AEE59094.1| ATP-dependent RNA helicase RhlB [Escherichia coli UMNK88]
 gi|332751084|gb|EGJ81488.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-671]
 gi|332996857|gb|EGK16477.1| ATP-dependent RNA helicase rhlB [Shigella flexneri VA-6]
 gi|333013582|gb|EGK32949.1| ATP-dependent RNA helicase rhlB [Shigella flexneri K-304]
          Length = 421

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|300714781|ref|YP_003739584.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299060617|emb|CAX57724.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 430

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSNP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  APEGRQVNQPRALILAPTRELAVQIHADAEPLTQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSFRVRELAFENMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNLPAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIT 380


>gi|332159793|ref|YP_004296370.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664023|gb|ADZ40667.1| putative DEAD-box helicase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 423

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 11  LHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 70

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 71  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 131 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 190

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 191 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 251 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 311 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 370

Query: 364 NVSVV 368
             S+ 
Sbjct: 371 GHSIP 375


>gi|318607668|emb|CBY29166.1| ATP-dependent RNA helicase RhlB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 428

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVIEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|262403204|ref|ZP_06079764.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
 gi|262350703|gb|EEY99836.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
          Length = 448

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + + PTRELA QV  EL  +         V  GG + + + + L  G  
Sbjct: 66  TKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATVITGGENFNDQVKALARGPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +                      +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDMAMEMLNDPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERTVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + ++    +E
Sbjct: 366 QQEIQFDVMEGLE 378


>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 435

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 107/370 (28%), Positives = 179/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+   +++ GY   T +Q   +   L+ +DV+ +AQTG+GKT +F L +   L    
Sbjct: 45  LSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPILEKL--RQ 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L  G  
Sbjct: 103 GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKATGLKGLAVFGGVDEQAQKQRLIEGVD 162

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 163 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPNEVQFLLFS 222

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   + IA+     S+I    + V    +   + +++       
Sbjct: 223 ATLSRKVRELAKTAVNDPYEITIAANQASKSNISQWLITVDKDTKSALLSHLITEQQWDQ 282

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 283 ALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKAGKIKYLVATGVAAR 342

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 343 GIDIEQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIESRLGHL 402

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 403 IERRVVEGFE 412


>gi|21410145|gb|AAH30895.1| Ddx21 protein [Mus musculus]
          Length = 689

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 241/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 98  FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 158 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 215

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 216 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 275

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 276 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 335

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 336 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 394

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 395 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 454

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 455 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 511

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 512 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 569

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 570 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRRW 613

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 614 QLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 654


>gi|317125686|ref|YP_004099798.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315589774|gb|ADU49071.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 562

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 189/377 (50%), Gaps = 10/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F + P    I  AL+E G ++   +Q   L   L   D++  A+TG+GKT+ FG+ + +
Sbjct: 16  TFADFPVHPEIISALAEWGIIHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPMLN 75

Query: 61  TLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           +++A  D           P ALA+APTRELAVQV  +LE      G+ V    GG +   
Sbjct: 76  SVVAPGDAGFDALPRPGKPQALAVAPTRELAVQVSGDLERAGRHRGIRVLTVYGGRAYEP 135

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  +VVGTPGRL D  +   L++S  K VVLDEADEMLDLGF  D+E ++  +
Sbjct: 136 QVDALRRGVEVVVGTPGRLIDLAKQGHLDLSQAKVVVLDEADEMLDLGFLPDVETLMSLT 195

Query: 177 PKKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           P  R+ ++FSAT+  AI                  +          ++         D+ 
Sbjct: 196 PASRQTMLFSATMPGAIVTLARRYMTQPTHIRAMGDENENAHTVKAVEQFVYRAHALDKV 255

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L+       I+F  T+ + ++    L E  F   A+ G+L Q  R  AL+  R+
Sbjct: 256 EMLSRMLQAKDRGLTIIFSRTKRTAAKVADELGERGFAAAAIHGDLGQGAREQALRAFRN 315

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ ++  VI+ +   + +  LHR GRT RAG  G++V  +  + 
Sbjct: 316 GKVDVLVATDVAARGIDVDNVTHVINFQCPEDEKTYLHRIGRTARAGNTGVAVTFVDWDD 375

Query: 353 QRRAERLFREANVSVVW 369
             R   + +  ++ +  
Sbjct: 376 LHRWALINKTLDLGIPE 392


>gi|255544594|ref|XP_002513358.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547266|gb|EEF48761.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 502

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 185/387 (47%), Gaps = 14/387 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F N+   +       E G    T VQ   +   L  KDVL  AQTGSGKT  F L + 
Sbjct: 63  SLFSNLGLAEWAVRTCKELGMKRPTPVQAHCIPKILEGKDVLGLAQTGSGKTATFALPIL 122

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL I PTRELA Q+  +   L +   +  AV +GG+    + +
Sbjct: 123 HRLAEDP------YGIFALVITPTRELAYQLAEQFRALGSCLNLRCAVVVGGMDKLTQAK 176

Query: 120 DLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            L    H+V+ TPGR+              S  K +VLDEAD +LD+GF D++  +    
Sbjct: 177 TLMARPHVVIATPGRVKVLLEDNPDIPSVFSKTKFLVLDEADRVLDVGFEDELRVVFQCL 236

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK R+ L+FSAT++  + +L +     A         +    +  + VLV  + +D  +V
Sbjct: 237 PKNRQTLLFSATMTSNLESLLEVSANKAYFYEAYEGFKTVDTLKQQYVLVPKNVKDVYLV 296

Query: 237 NI---LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I   +   G ++AI+F ST  +    + +L E   +  AL    SQ  R +AL+  + G
Sbjct: 297 YILSKMEDMGIRSAIIFVSTCRTCYLLSLLLEELEKEPAALHSFKSQSLRLSALRRFKSG 356

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +A + IATDVA+RG+D+P ++LV++ +L   P + +HR GRT RAGR G+++  I QN  
Sbjct: 357 QASILIATDVASRGLDIPTVDLVVNYDLPRYPRDYVHRVGRTARAGRGGLAMSFISQNDF 416

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRE 380
                +       +        E + +
Sbjct: 417 VLIREIEAVLGKQLGEFECKENEVLSD 443


>gi|168751737|ref|ZP_02776759.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753673|ref|ZP_02778680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768057|ref|ZP_02793064.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775673|ref|ZP_02800680.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780675|ref|ZP_02805682.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786614|ref|ZP_02811621.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|168800996|ref|ZP_02826003.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938068|ref|ZP_03083450.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809105|ref|ZP_03251442.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812626|ref|ZP_03253955.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819057|ref|ZP_03259377.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397506|ref|YP_002273298.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795778|ref|YP_003080615.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225554|ref|ZP_05939835.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255600|ref|ZP_05948133.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK966]
 gi|291285195|ref|YP_003502013.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226739531|sp|B5YY28|RHLB_ECO5E RecName: Full=ATP-dependent RNA helicase rhlB
 gi|187768819|gb|EDU32663.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014285|gb|EDU52407.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001565|gb|EDU70551.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359231|gb|EDU77650.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362707|gb|EDU81126.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373308|gb|EDU91724.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC869]
 gi|189376769|gb|EDU95185.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC508]
 gi|208728906|gb|EDZ78507.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733903|gb|EDZ82590.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739180|gb|EDZ86862.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158906|gb|ACI36339.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753518|gb|ACI75066.1| thioredoxin 1 [Escherichia coli]
 gi|209753520|gb|ACI75067.1| thioredoxin 1 [Escherichia coli]
 gi|209753522|gb|ACI75068.1| thioredoxin 1 [Escherichia coli]
 gi|209753524|gb|ACI75069.1| thioredoxin 1 [Escherichia coli]
 gi|209753526|gb|ACI75070.1| thioredoxin 1 [Escherichia coli]
 gi|254595178|gb|ACT74539.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|290765068|gb|ADD59029.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191126|gb|EFW65776.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639264|gb|EFX08886.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           G5101]
 gi|320644649|gb|EFX13699.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str.
           493-89]
 gi|320649974|gb|EFX18477.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H- str. H
           2687]
 gi|320655320|gb|EFX23262.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660945|gb|EFX28388.1| ATP-dependent RNA helicase RhlB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666069|gb|EFX33083.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344238|gb|EGD67998.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1125]
          Length = 421

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|58426933|gb|AAW75970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 482

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 135/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT VQ   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 25  MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 84

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 85  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 138

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 139 LASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 198

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD + + +   +           +     R  A+ 
Sbjct: 199 DKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 257

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 258 GLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 317

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 318 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 377

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 378 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 426



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 397 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 456

Query: 515 ADGV 518
              V
Sbjct: 457 RAQV 460


>gi|84624218|ref|YP_451590.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898981|ref|YP_201355.2| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576177|ref|YP_001913106.1| ATP-dependent RNA helicase DbpA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368158|dbj|BAE69316.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520629|gb|ACD58574.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 458

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 135/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT VQ   L P LR  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPVQAQSLPPILRGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +  H+VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPHVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD + + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFTPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
 gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
          Length = 398

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWVQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|308813391|ref|XP_003084002.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
 gi|116055884|emb|CAL57969.1| putative RNA helicase, DRH1 (ISS) [Ostreococcus tauri]
          Length = 1118

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 217/493 (44%), Gaps = 31/493 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++   P  + +AL  +GY   T +Q       L+ KDV+  A+TGSGKT  F L   +
Sbjct: 87  TFDDAKFPAALRKALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPALA 146

Query: 61  TLLAENDRFSP------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            ++AE  + +P            A  P  + +APTRELA+Q+  E        G   AV 
Sbjct: 147 KIVAEGTQKAPEMQLVDGRWRPGAVTPSVIVLAPTRELAIQIHDECAKFCPAAGCRSAVL 206

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDH-----IRGKGLNISHLKAVVLDEADEMLDL 163
            GG +   + R L++GA +VV TPGRL D           ++      VVLDEAD MLD+
Sbjct: 207 YGGAAKGDQLRALRSGADVVVATPGRLNDFLEPPPGFTAPVSAVKAAYVVLDEADRMLDM 266

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---HSDID 220
           GF   I+ I    P  R+ +MF+AT    +  +A  +    + + I S   +   +  I 
Sbjct: 267 GFEPQIKKIFKLCPSARQTVMFTATWPKGVQKIADAFTTKPIHIQIGSGGDKLTANKSIT 326

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVA-LSGE 277
               +V   ++ +  V IL+    KN   I+F  T+       + L +  F     + G+
Sbjct: 327 QTVEVVEEEEKFDRCVAILKKELGKNETCIMFAGTKRRCDFLDRRLKQVGFSSAGSIHGD 386

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q ER   L   R GR  + +ATDVAARG+D+P +  VI  +     E+ +HR GRTGR
Sbjct: 387 KDQYEREMVLDNFRRGRGNILVATDVAARGLDIPGVAAVIVYDFPLQVEDYVHRIGRTGR 446

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           AG+ G +     ++ +  A  L      +    P  +++A++ +  Q I  D   L    
Sbjct: 447 AGKDGKAFTFFTKDNRGAANELIEILQGAGQTVPL-ALQAMQRKVFQFITFDSSTLLRPL 505

Query: 398 GDEKKMVDVLLAKHD---PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
              ++  D +  + D   P + A+  +    A         P +   G       +RA +
Sbjct: 506 S-RRRHFDPIRRRVDVSGPPRAASAHVVALHARDARRVSPRPRTRAIGSSNAHR-TRAKR 563

Query: 455 VGGGSRDNFKGSS 467
             G +  +    S
Sbjct: 564 HRGRTPRSVSDES 576


>gi|66825125|ref|XP_645917.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
 gi|1688326|gb|AAB36962.1| IfdA [Dictyostelium discoideum]
 gi|60473986|gb|EAL71923.1| DEAD/DEAH box helicase domain-containing protein [Dictyostelium
           discoideum AX4]
          Length = 395

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 188/374 (50%), Gaps = 11/374 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+N  +P+ +   +   G+   +++Q+  + P  +  D++  AQ+G+GKT  F + +
Sbjct: 23  VDSFDNMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGI 82

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S +              AL IAPTRELA Q+ + +  L     +    CIGG  +  + 
Sbjct: 83  LSRIDIS------VLKCQALIIAPTRELAQQIQKVVLALGEYLHIKSYACIGGTKITDDI 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ+G H+VVGTPGR+ + +    +N   ++   LDEADEML  GF+D I  I    PK
Sbjct: 137 QALQSGVHVVVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSRGFKDQIYEIFRFLPK 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             ++ +FSAT++     +   + ++ V + +  +      I      +     +   + +
Sbjct: 197 TIQVGLFSATMTDETLGITSKFMQNPVSILVKKDELTLEGIRQFYVNVGVEQGKFEVLTD 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++FC+TR  V   T  + E  F V +  G+   ++R   LQ  R G  RV
Sbjct: 257 LYETLSITQSVIFCNTRRKVDWLTSKMTEQKFTVSSTHGDQ--KDRDGILQAFRSGATRV 314

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ ARGID+  + LVI+ +L +N EN +HR GR+GR GRKG+++  I    + + +
Sbjct: 315 LITTDLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAERGQID 374

Query: 358 RLFREANVSVVWEP 371
            L R  N  +   P
Sbjct: 375 ELSRHYNTYIAEMP 388


>gi|299535847|ref|ZP_07049168.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
 gi|298729047|gb|EFI69601.1| ATP-dependent RNA helicase yqfR [Lysinibacillus fusiformis ZC1]
          Length = 433

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 188/382 (49%), Gaps = 9/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    + +A++  G+   T +Q+ I+   L+ K  +  A TG+GKT +F + +   +  E
Sbjct: 8   NFQPFLQDAIANLGFTEPTPIQKEIIPLLLKGKSAIGQAHTGTGKTHSFLIPIVQRIDVE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+  +PTRELA Q+   L  L   T +   + IGG    R    L+   
Sbjct: 68  KQEV------QAVITSPTRELAQQIFDALNQLIEGTAIQAKLFIGGTDKQRSIDKLKTQP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGR+ D +  + L +     +V+DEAD   D+GF ++I+      P+K  M +F
Sbjct: 122 QIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMYVF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y +  V V++  +      ID+  V V    R+  ++ ++      
Sbjct: 182 SATIPEKLQPFLKKYMEAPVHVHMNDKRPVAEGIDFVLVPVRSKSRNKRLLEVIEGINPF 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++F +TR +       L EH  +   + G+LS ++R   ++ +RD   +  +ATD+AA
Sbjct: 242 LAVIFTNTRKTAEHVAGYLNEHGIRCGQIHGDLSPRDRKKMMKQIRDLDYQYIVATDLAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ E+  + E  +HR GRT RAG KG ++ +   + +    R+ +   +
Sbjct: 302 RGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSDEDAVVRVEK-MGI 360

Query: 366 SVVWEPAPSVE--AIRERDAQR 385
             V +     E   ++ER A++
Sbjct: 361 PFVQKDVKDGEWSELKERHARK 382


>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 397

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  +++     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVDQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|21627812|emb|CAD37144.1| probable ATP-dependent RNA helicase [Aspergillus fumigatus]
          Length = 750

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 197/465 (42%), Gaps = 10/465 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F ++P  +     L+   Y  LT +Q   ++  L+ +D+L +A+TGSGKT+AF + +
Sbjct: 46  FKSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPV 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 106 LENLY--RKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQ 163

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +L+ +VLDEAD +LDLGF+  ++ I+   PK
Sbjct: 164 ERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPK 223

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  ++ LA+   +D   V +         S +    V+  L  + + + 
Sbjct: 224 ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILW 283

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     +VF S+   V    +        +  +     Q++      +      +
Sbjct: 284 SFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSK 343

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G +V  +  + + 
Sbjct: 344 HCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEE 403

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +   +  V +      + +   I+++      +DP      Q      V  +  + D
Sbjct: 404 GMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYLGQKAFISYVKSVYIQKD 463

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            E      L++            P       D  +    A +   
Sbjct: 464 KEIFKLKELKLDEFAASLGLPGAPRIKFIKGDDTKQRKNAPRAAA 508


>gi|331266730|ref|YP_004326360.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
 gi|326683402|emb|CBZ01020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus oralis Uo5]
          Length = 447

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +  
Sbjct: 3   FKKFQ-FKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D      +  A+  AP+RELA Q+ +    + A + V V V           + 
Sbjct: 62  QLDETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S P
Sbjct: 116 EKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  
Sbjct: 176 KDLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L     +V  + G+++ +ER   +  +++     
Sbjct: 236 LTQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             ++++D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R ++RA          
Sbjct: 400 LVKKKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
 gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
          Length = 630

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 130/390 (33%), Positives = 192/390 (49%), Gaps = 28/390 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL+  GY   T VQ+  +   L  +D+LVS+ TGSGKT AF L          
Sbjct: 138 LSPEIVSALTAAGYQAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIERFAQMQ 197

Query: 63  ----------------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
                                    + R  P + P  L + PTRELA+QV          
Sbjct: 198 KAGTLGQRANQPVHQAQRGDRGERRHRREQPVARPALLVLTPTRELAMQVTTAATTYGKH 257

Query: 101 TGV-VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
                    +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD 
Sbjct: 258 LRRLRTVSILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQMLVLDEADR 317

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           MLD+GF +DIE I+D +P  R+ L+FSAT+   + +LA+ +  DA R+ I  E    ++I
Sbjct: 318 MLDMGFIEDIEAIIDRTPATRQTLLFSATLDGKVGSLAQRFLSDAERIEIRREPESRANI 377

Query: 220 DYRAVLVALS-DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
                 V     +D  + ++L       AIVF +T+         LAE  F   AL G+L
Sbjct: 378 AQSVHYVDDRAHKDRLLTHLLADGALDQAIVFTATKNDADVIAARLAEDGFASAALHGDL 437

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q  R+  ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRA
Sbjct: 438 PQGARNRTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRA 497

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           GR G++V ++        +R+ R     + 
Sbjct: 498 GRSGIAVSLVHHAEVGTLKRIERFVRTPLP 527


>gi|197692141|dbj|BAG70034.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
 gi|197692387|dbj|BAG70157.1| ATP-dependent RNA helicase DDX3X [Homo sapiens]
          Length = 662

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|154420635|ref|XP_001583332.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121917573|gb|EAY22346.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 449

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 119/449 (26%), Positives = 209/449 (46%), Gaps = 18/449 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL+E  + N T VQ   +   L  +D+  +A TGSGK++AF + +   LL   
Sbjct: 14  LAKPIIRALNENNFTNPTKVQAETIPKILSGQDICATAITGSGKSMAFLIPIVQKLLT-- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F     P AL ++PTRELA Q+    + L A   +   + IGGVS   +R  L     
Sbjct: 72  --FRGLPGPKALIMSPTRELAQQLKAVCDMLAAHCAITSTLVIGGVSDEEQRELLTPAPD 129

Query: 127 IVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++GTPGR  D I    +  + HL+  VLDEAD +L  GF   +  I+   P+K + L+F
Sbjct: 130 IIIGTPGRFIDSIFNAKVLKLEHLQFFVLDEADRLLGKGFESQLNTIVSQLPEKHQTLLF 189

Query: 186 SAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHG 243
           +AT          K  +K + +++I      + +I    +     +R    +    R   
Sbjct: 190 TATLNDQVAKLATKIQKKSSEKISINPYMELNPNITQMFIKTKKEERRLPYLVALCRNMC 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF  T+A       +          L  +LSQ  R+ A++  R+ + +  +A+D+
Sbjct: 250 KDKTLVFFPTKALAHHVFLLFKNLGIASAELHADLSQTARNEAIEQFRESKVQYLLASDL 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAERLFRE 362
           AARGID+PD+E VI+  + +  E  +HR+GRTGRAG+KG ++ + +    +R  +++ + 
Sbjct: 310 AARGIDIPDIEYVINFTIPNELERYIHRTGRTGRAGKKGTAISMYVTPEEKRVMKKMQKN 369

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           +   V +   P  + +R++  + + Q    ++  +  E++  +                +
Sbjct: 370 SPGEVQFMTIP--DNLRDQALESVKQYEEQIEEEKRKEEEEKEKRAEI--------AAEK 419

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
             +A L   EE+          +    +R
Sbjct: 420 RMKAMLDIEEEVPQKMPGEDAFKRHKKNR 448


>gi|322795050|gb|EFZ17898.1| hypothetical protein SINV_07122 [Solenopsis invicta]
          Length = 725

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 114/420 (27%), Positives = 208/420 (49%), Gaps = 15/420 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  +D+   A TG+GKT A+ L +   LL  
Sbjct: 165 NLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPVLERLLYR 224

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                P   P     L + PTREL VQV +  + L   T V V + +GG+ V  +   L+
Sbjct: 225 -----PLDGPAISRVLVLVPTRELGVQVYQVTKQLAQFTTVEVGLSVGGLDVKIQEGVLR 279

Query: 123 NGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+R     ++  ++ ++LDEAD MLD  F + +++I+    + R+
Sbjct: 280 KNPDIVIATPGRLIDHLRNAPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRTRQ 339

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNI 238
            ++FSAT++  +  LA       +++ + S      ++    + +       R+  +  +
Sbjct: 340 TILFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 399

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      +A+VF  T+    R   +L     +V  L G L+Q +R   L+  +D    + 
Sbjct: 400 VCRTFHDHAMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLRKFKDEEIDIL 459

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   + 
Sbjct: 460 LATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKE 519

Query: 359 LFREANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + ++A   V     P  + I +  +  Q +  D   +   +  EK++  V    +  EK+
Sbjct: 520 VIKQAKNQVKNRIIP-PDIIEKYNKKLQSLESDVEKILQEEKSEKELAKVENEANRVEKL 578


>gi|297521198|ref|ZP_06939584.1| ATP-dependent RNA helicase RhlB [Escherichia coli OP50]
          Length = 425

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 20  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 79

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 80  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 140 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 199

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 200 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 259

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 260 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 319

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 320 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 379

Query: 364 NVSVV 368
             S+ 
Sbjct: 380 GHSIP 384


>gi|254584210|ref|XP_002497673.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
 gi|238940566|emb|CAR28740.1| ZYRO0F10934p [Zygosaccharomyces rouxii]
          Length = 603

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 193/378 (51%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +V  T VQ+  +     ++D++  AQTGSGKT  F   + S      
Sbjct: 140 LDELLLENIKFAHFVKPTPVQKYSIPIVANKRDLMACAQTGSGKTGGFLFPVLSESFFTG 199

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P +A         P A+ +APTRELA Q+  E +    ++ V   V  GG  V  +
Sbjct: 200 PSEIPEAARSSYMRKAFPTAVVLAPTRELATQIFDEAKKFTYRSWVRPTVVYGGSDVGSQ 259

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            RDL  G  ++V TPGRL D +    ++++ +K +VLDEAD MLD+GF   I        
Sbjct: 260 MRDLDRGCDLLVATPGRLNDLLERGKISLAKVKYLVLDEADRMLDMGFEPQIRNIVEGCD 319

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                +R+ LMFSAT    I  LA+++  D + +++        +I  R + V   D+ +
Sbjct: 320 MPGVDQRQTLMFSATFPVDIQHLARDFLSDYIFLSVGRVGSTSENITQRVLYVEDEDKKS 379

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A++++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   + G
Sbjct: 380 ALLDLLSASSGGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALGSFKTG 439

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
           +A + +AT VAARG+D+P++  VI+ +L  + ++ +HR GRTGRAG  G++   +    +
Sbjct: 440 KADLLVATAVAARGLDIPNVTHVINYDLPGDVDDYVHRIGRTGRAGNTGLATAFLNRGNK 499

Query: 351 NMQRRAERLFREANVSVV 368
           N+ +    +  EAN  V 
Sbjct: 500 NVVKGLIEILSEANQEVP 517


>gi|261343045|ref|ZP_05970903.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
 gi|288314609|gb|EFC53547.1| ATP-dependent RNA helicase RhlB [Enterobacter cancerogenus ATCC
           35316]
          Length = 421

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 186/366 (50%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALETKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPAANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVVW 369
             S+  
Sbjct: 376 GHSIPQ 381


>gi|226510222|ref|NP_001147777.1| nucleolar RNA helicase 2 [Zea mays]
 gi|195613718|gb|ACG28689.1| nucleolar RNA helicase 2 [Zea mays]
          Length = 613

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 202/367 (55%), Gaps = 7/367 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
              I E L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   +L+ N+
Sbjct: 103 SPRIVEKLAARGITRLFPIQRAVLEPAMQGKDMIGRARTGTGKTLAFGIPIMDKILSYNE 162

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +      PLA+ +APTRELA QV +E         +      GGV ++++ R L  G  I
Sbjct: 163 KNGNGRNPLAIILAPTRELARQVEKEFRESA---PLDTLCVYGGVPINQQMRALNYGVDI 219

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ D +R   LN+S ++ VVLDEAD+ML +GF +D+E I++  P+ R+ ++FSA
Sbjct: 220 VVGTPGRVIDLLRRGVLNLSQIQFVVLDEADQMLAVGFDEDVEVIMEQLPQNRQSMLFSA 279

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---ILRYHGA 244
           T+   I  ++  Y KD V +++  ++ Q          +A  +     +    I  +   
Sbjct: 280 TMPSWIRKISNKYLKDPVIIDLVGDSDQKLPEGISLYSIASDNFGKPSIIGPLIKEHANV 339

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF  T+    R   V+        AL G++SQ +R   L   RDGR  + +ATDVA
Sbjct: 340 GKCIVFTQTKREADRLAYVMGRSYQCQ-ALHGDISQNQRERTLSGFRDGRFNILVATDVA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P+++LV+H E+ +  E  +HRSGRT RAG+KG ++ +      R    + ++  
Sbjct: 399 ARGLDIPNVDLVVHYEIPNTSELFVHRSGRTARAGKKGSAILIYTYEQTRAVRVIEQDIG 458

Query: 365 VSVVWEP 371
                 P
Sbjct: 459 CRFTELP 465


>gi|168467669|ref|ZP_02701506.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822969|ref|ZP_02834969.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|197265404|ref|ZP_03165478.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200386552|ref|ZP_03213164.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238912924|ref|ZP_04656761.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|195630001|gb|EDX48661.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243659|gb|EDY26279.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199603650|gb|EDZ02195.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205340707|gb|EDZ27471.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088331|emb|CBY98091.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322612998|gb|EFY09949.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617414|gb|EFY14314.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625594|gb|EFY22416.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627017|gb|EFY23810.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631267|gb|EFY28030.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638300|gb|EFY34999.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642850|gb|EFY39436.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646994|gb|EFY43496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650382|gb|EFY46795.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656328|gb|EFY52622.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657553|gb|EFY53823.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665964|gb|EFY62145.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666703|gb|EFY62880.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671054|gb|EFY67184.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679239|gb|EFY75291.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681643|gb|EFY77670.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686030|gb|EFY82018.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192656|gb|EFZ77884.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197837|gb|EFZ82968.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203726|gb|EFZ88747.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205399|gb|EFZ90373.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210770|gb|EFZ95646.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215936|gb|EGA00669.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221429|gb|EGA05847.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227329|gb|EGA11496.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231738|gb|EGA15849.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236153|gb|EGA20230.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239610|gb|EGA23658.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244294|gb|EGA28302.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249609|gb|EGA33521.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250299|gb|EGA34185.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256506|gb|EGA40237.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259796|gb|EGA43429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265204|gb|EGA48702.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268367|gb|EGA51839.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 421

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|16762215|ref|NP_457832.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16767190|ref|NP_462805.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143704|ref|NP_807046.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182390|ref|YP_218807.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161617032|ref|YP_001590997.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553316|ref|ZP_02347066.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994610|ref|ZP_02575701.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168234235|ref|ZP_02659293.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238371|ref|ZP_02663429.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244966|ref|ZP_02669898.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263194|ref|ZP_02685167.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194445390|ref|YP_002043152.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449027|ref|YP_002047935.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737374|ref|YP_002116850.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251034|ref|YP_002148844.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|204930263|ref|ZP_03221240.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354515|ref|YP_002228316.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859126|ref|YP_002245777.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224585737|ref|YP_002639536.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|61230470|sp|P0A2P0|RHLB_SALTY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|61230478|sp|P0A2P1|RHLB_SALTI RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81309537|sp|Q57HT6|RHLB_SALCH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040036|sp|A9MXF3|RHLB_SALPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739543|sp|B5EZ40|RHLB_SALA4 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739545|sp|B5QVH2|RHLB_SALEP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739546|sp|B5RFS3|RHLB_SALG2 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739547|sp|B4TB13|RHLB_SALHS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739548|sp|B4SZ26|RHLB_SALNS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739550|sp|B4TNT3|RHLB_SALSV RecName: Full=ATP-dependent RNA helicase rhlB
 gi|254797690|sp|C0Q2V9|RHLB_SALPC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|25513028|pir||AG0922 probable ATP-dependent RNA helicase rhlB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16422482|gb|AAL22764.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504519|emb|CAD09401.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139339|gb|AAO70906.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62130023|gb|AAX67726.1| putative helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161366396|gb|ABX70164.1| hypothetical protein SPAB_04860 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404053|gb|ACF64275.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407331|gb|ACF67550.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194712876|gb|ACF92097.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197214737|gb|ACH52134.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197288752|gb|EDY28127.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204320667|gb|EDZ05869.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274296|emb|CAR39317.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205322216|gb|EDZ10055.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327555|gb|EDZ14319.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205331809|gb|EDZ18573.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336231|gb|EDZ22995.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205348300|gb|EDZ34931.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710929|emb|CAR35295.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470265|gb|ACN48095.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261249043|emb|CBG26903.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996196|gb|ACY91081.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160435|emb|CBW19964.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915038|dbj|BAJ39012.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225440|gb|EFX50497.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322716883|gb|EFZ08454.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132267|gb|ADX19697.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326629650|gb|EGE35993.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990755|gb|AEF09738.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 421

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|67528815|ref|XP_662070.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
 gi|40741041|gb|EAA60231.1| hypothetical protein AN4466.2 [Aspergillus nidulans FGSC A4]
          Length = 1526

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 192/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   ++   Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 185 VNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGSGKTGGFLFPI 244

Query: 59  ASTLLAENDRF-----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            S                       + P +L +APTREL  Q+  E      ++ V   V
Sbjct: 245 LSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAYRSWVRPCV 304

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  +  + R ++ G  ++V TPGRL D I    +++ ++K ++LDEAD MLD+GF  
Sbjct: 305 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEP 364

Query: 168 DIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I       +   R+ LMFSAT    I  LA+++ KD V +++        +I  + 
Sbjct: 365 QIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKV 424

Query: 224 VLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V   D+ + +++IL  HG     ++F  T+      ++ L    F   A+ G+ +Q+E
Sbjct: 425 EYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRE 484

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G
Sbjct: 485 RERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 544

Query: 343 MSVFVIPQNMQ---RRAERLFREANVSVV 368
           ++     +  +   R    L +EA+  V 
Sbjct: 545 IATAFFNRGNRGVVRDLIDLLKEAHQEVP 573


>gi|257055065|ref|YP_003132897.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
 gi|256584937|gb|ACU96070.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
           43017]
          Length = 449

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 129/361 (35%), Positives = 186/361 (51%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ +  AL + G      +Q A L   L  +DVL  AQTGSGKT+AFGLAL S L   
Sbjct: 26  NLPKALHRALRKAGLHTPFPIQAATLPDALAGRDVLGRAQTGSGKTLAFGLALLSRLDGG 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R      P AL + PTRELA+QV   L  L    G+     +GG+S+ R+   L  G 
Sbjct: 86  KARPRR---PRALVLVPTRELAMQVADALVPLAKAMGLWCRTVVGGMSLQRQAEALLRGV 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL DH+R     +  ++ V +DEAD+M D+GF   +  ILD +P   + L+F
Sbjct: 143 DLVIATPGRLSDHVRQGTCTLDGIELVAIDEADQMADMGFLPQVRQILDRTPPDGQRLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  A+  L   Y  D V  ++A        +++   L  +  +D   V         
Sbjct: 203 SATLDDAVADLVSRYLTDPVTHSVAPVTASVDTMEHH--LFQVEHKDKQAVVTEIAARQG 260

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+  V R T  L        AL G  +Q +R+  L   R GR  V +ATDVAA
Sbjct: 261 RTILFVRTKHHVDRLTTRLRAAGVPAAALHGGKTQGQRNRVLADFRSGRMPVLVATDVAA 320

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  + LV+H + +++ ++ LHR+GRT RAG  G  V ++ +  +R   R+   A V
Sbjct: 321 RGIHVDGIGLVLHVDPAADHKDYLHRAGRTARAGASGTVVTLVTREQRRTVRRMLERAGV 380

Query: 366 S 366
            
Sbjct: 381 R 381


>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 452

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 199/383 (51%), Gaps = 11/383 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + EA    G+   T +Q   +   L+  D++  AQTGSGKT  F L +   LL     
Sbjct: 28  EQLAEACDALGWKAPTQIQVDAVPVALKGHDIIGLAQTGSGKTATFALPILQALLENPQP 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   A  ++PTRELA+Q+  + E L +  G+  AV +GG+ +  +   L    H+V
Sbjct: 88  ------LFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGIDMMAQSVALAKRPHVV 141

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VGTPGRL DH+      ++  +K +VLDEAD +L++ F  +I+ IL   PK+RR  +FSA
Sbjct: 142 VGTPGRLVDHLTNTKGFSLRTIKYLVLDEADRLLNMDFEQEIDEILKVIPKERRTYLFSA 201

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+V ++++      +    + +    +D  +V IL       A
Sbjct: 202 TMTTKVAKLQRACLKNPVKVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILNELAGNTA 261

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T  +  + + VL    F  + +SG++SQ +R  AL   + G   + I TDVA+RG
Sbjct: 262 MVFTRTCEATRKLSLVLRNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILICTDVASRG 321

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P + LVI+ ++ +N ++ +HR GRT RAGR G ++ ++ Q      +++       +
Sbjct: 322 LDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQYDVELYQKIEELIGKKL 381

Query: 368 VWEPAPSVEAI----RERDAQRI 386
                   E +    R  +AQR+
Sbjct: 382 PEFSHQQEEVLLMLERVSEAQRL 404


>gi|238798893|ref|ZP_04642359.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
 gi|238717247|gb|EEQ09097.1| ATP-dependent RNA helicase rhlB [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +AL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVTQALESKGFEYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSNP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
 gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
          Length = 523

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 195/399 (48%), Gaps = 25/399 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 53  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 112

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 113 KAHAQQPRAPREAGQGERRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLKRLRT 172

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 173 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 232

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            DDIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 233 IDDIETIVAATPASRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 292

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR      AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 293 VDDRDHKDRLLDHLLRDTALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 352

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++
Sbjct: 353 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIA 412

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           V ++    Q   +R+ R     +   P   +E    R A
Sbjct: 413 VSLVHHAEQGALKRIERFVRAPL---PVNVIEGFEPRKA 448


>gi|62857681|ref|NP_001016776.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
 gi|89270404|emb|CAJ82546.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 112/420 (26%), Positives = 212/420 (50%), Gaps = 13/420 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E++ +    A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF +     +  
Sbjct: 152 ESVNENTLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELVY- 210

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    L ++PTRELA+Q    L+ L A       + +GG +   E + L NG
Sbjct: 211 -KLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANG 269

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH++        +L+ +V+DEAD +L++GF  +++ I++  PK+R+ +
Sbjct: 270 VNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTM 329

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LA+   K         ++++ + +D      V+     R   +   L+
Sbjct: 330 LFSATQTRKVEDLARISLKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFTFLK 389

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + 
Sbjct: 390 KNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLC 449

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R
Sbjct: 450 TDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGFL-R 507

Query: 359 LFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             ++A V +         +  I +   +++++   +L     +  K        H  ++I
Sbjct: 508 YLKQAKVPLSEFEFSWSKISDI-QTQLEKLIEKNYYLHKSAQEAYKAYIRAYDSHSHKQI 566


>gi|323172286|gb|EFZ57923.1| ATP-independent RNA helicase dbpA [Escherichia coli LT-68]
          Length = 457

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLRFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGVDIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|326915068|ref|XP_003203843.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Meleagris
           gallopavo]
          Length = 369

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 110/361 (30%), Positives = 193/361 (53%), Gaps = 7/361 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++   L  +           AL
Sbjct: 15  GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRETQAL 68

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            +APTRELAVQ+ + L  L     V    CIGG +V  + R L  G H+V GTPGR+ D 
Sbjct: 69  ILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 128

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           IR + L    +K +VLDEADEML+ GF++ I  +    P   ++++ SAT+   I  +  
Sbjct: 129 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 188

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            +  D +R+ +  +      I    V +     + + + ++        A++FC+T+  V
Sbjct: 189 KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKV 248

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+TDV ARG+D+P + L+I
Sbjct: 249 DWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 308

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +L +N E  +HR GR+GR GRKG+++  +  +  R    + +  +  +   P    + 
Sbjct: 309 NYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADL 368

Query: 378 I 378
           I
Sbjct: 369 I 369


>gi|323977024|gb|EGB72111.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
          Length = 457

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQKID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AIT ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L +     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|323964518|gb|EGB59993.1| DEAD/DEAH box helicase [Escherichia coli M863]
          Length = 398

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQKID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AIT ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L +     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381


>gi|50310213|ref|XP_455126.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660335|sp|Q6CLR3|DED1_KLULA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49644262|emb|CAG97833.1| KLLA0F01034p [Kluyveromyces lactis]
          Length = 627

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 197/378 (52%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + +    +   T VQ+  +      +D++  AQTGSGKT  F   + S   +  
Sbjct: 166 LDPLLLDNIKLARFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFSSG 225

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              +P +A         P A+ +APTRELA Q+  E +    ++ V   V  GG S+  +
Sbjct: 226 PASTPEAAGNSYIKKVYPTAVILAPTRELATQIYDEAKKFTYRSWVKPMVVYGGASIDNQ 285

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----L 173
            + ++ G +++V TPGRL D +  + ++++++K +VLDEAD MLD+GF   I  I     
Sbjct: 286 IKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSD 345

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             S   R+ LMFSAT    I  LA ++ KD V +++        +I  + + V   D+++
Sbjct: 346 MPSVDNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKND 405

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L        ++F  T+ +    T  L    F+  A+ G+ +Q ER  AL   + G
Sbjct: 406 TLLDLLAASNEGLTLIFVETKRAADSLTDFLIMEGFKATAIHGDRTQGERERALSAFKTG 465

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
           RA + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G++        +
Sbjct: 466 RATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNK 525

Query: 351 NMQRRAERLFREANVSVV 368
           N+ +    L  EAN  V 
Sbjct: 526 NVAKELVSLLSEANQEVP 543


>gi|316979810|gb|EFV62545.1| ATP-dependent RNA helicase DDX42 [Trichinella spiralis]
          Length = 741

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 182/379 (48%), Gaps = 7/379 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +    + +   + +  +   T +Q   +   +  +D++  A+TGSGKT A+    
Sbjct: 202 VTSFAHFGFDEKLMSLIRKYEFSQPTPIQAQGIPVVMSGRDIIGIAKTGSGKTAAYLWPA 261

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++++         P+ L + PTRELA+QV  E +       + V    GG S   + 
Sbjct: 262 IYHIISQRH-LDEKEGPICLIVVPTRELAIQVYNEAKKYGKYFDIRVVCAYGGGSKWEQS 320

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  GA +VV TPGR+ D I+ K  N   +   VLDEAD M DLGF   +  I D    
Sbjct: 321 KALAEGAEVVVCTPGRIIDLIKAKATNFERVTYFVLDEADRMFDLGFEAQVRSIADHIRP 380

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ LMFSAT    I  LA++   + V+V        ++DI       A        +  
Sbjct: 381 DRQCLMFSATFKKKIERLARDVLTNPVKVIQGEVGEANADIQQIVEYFASPPTKWTWLLG 440

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++++      ++F S +  V    + L    F+V  L G++ Q ER+  +   +     
Sbjct: 441 NLVKFCSMGKVLIFISQKVHVEEIAENLKAKDFRVCILHGDMFQHERNQVIHAFKKDDVP 500

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+P ++ VI+ +++ + +  +HR GRTGRAG KG +  ++    +  A
Sbjct: 501 ILIATDVAARGLDIPTIKTVINYDVAKDLDTHVHRIGRTGRAGEKGFAYTLVTDKDKEFA 560

Query: 357 ERLFREANVSVVWEPAPSV 375
             L +  ++  V +  P+ 
Sbjct: 561 GHLVK--SLESVNQEVPTA 577


>gi|296158936|ref|ZP_06841764.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295890811|gb|EFG70601.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 539

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 193/375 (51%), Gaps = 20/375 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L          
Sbjct: 58  LSADVVSALTAAGYQNPTPVQQRAIPAGIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQ 117

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 118 KAQAGQPREPRPADGARTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 177

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +
Sbjct: 178 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIE 237

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DIE I+ ++P  R+ ++FSAT+   IT+L     KD  R+ I     Q ++I        
Sbjct: 238 DIETIVAATPATRQTMLFSATLDGKITSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYVD 297

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 298 DRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 357

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 358 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 417

Query: 347 VIPQNMQRRAERLFR 361
           ++    Q   +R+ R
Sbjct: 418 LVHHAEQGALKRIER 432


>gi|294933513|ref|XP_002780743.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239890799|gb|EER12538.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 634

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 183/409 (44%), Gaps = 23/409 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   PQ + EAL  +G    T +Q   L   L  +D++  A TGSGKT+ F +  
Sbjct: 187 IKSFKDMLFPQGVLEALKSKGISRPTQIQMQGLPEALLGRDLIGIAFTGSGKTLVFAIPA 246

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               +    R   + +  P  L IAP+RELA Q    +E+  +      +          
Sbjct: 247 ILRAMEMEMRAPVADSEGPFCLLIAPSRELAQQTHEVVEYYASYLTGRPSSRSRHRLPRL 306

Query: 117 ERRDL-------------QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
             +               + G HIV  TPGRL   +  K   ++    + LDEAD M+DL
Sbjct: 307 RCQLCIGGESLGRQAANVRRGVHIVTATPGRLNHMLNEKMFTLAQCVYICLDEADRMVDL 366

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF D++   LD    +R+ L+FSAT+   I   A +   + V +N+      + D+    
Sbjct: 367 GFEDEVRNTLDHFGHQRQTLLFSATMPRKIQEFATSALVNPVTINVGRAGAANLDVVQEV 426

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V    +   ++  L+       +VFCS +AS     + L        A+ G L Q ER
Sbjct: 427 EYVKAESKLTYLLQCLQKTAPP-VMVFCSDKASCDEVLEYLLLKGVGACAIHGGLEQSER 485

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             + ++ + G   V I TDVA++G+D P ++ VI+ ++    EN +HR GRTGR GR G+
Sbjct: 486 HKSTRLFKSGAKDVLIGTDVASKGLDFPAIQHVINYDMPKEIENYVHRIGRTGRCGRTGV 545

Query: 344 SVFVIPQNMQR----RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +   I +++        + +  EA   V       +EA+   D   ++ 
Sbjct: 546 ATTFINKSVDETVLLDLKAILEEAGQRVPPF-LEHLEAVGGEDTAEVVN 593


>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
 gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
          Length = 528

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 197/375 (52%), Gaps = 2/375 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ E G+   T +Q+  L   L  +DV+ SA TG+GKT AF L     +    
Sbjct: 15  LLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQRIAT-T 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P  L + PTRELA QV   +  L     +     +GG+   ++   L+    
Sbjct: 74  ARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEMLRRRVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+    L++S ++ +VLDEAD MLD+GFR+ +EFI  + P +R+ L+F+
Sbjct: 134 LIVATPGRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLLFT 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGAK 245
           AT+      LA+   +D VR+++A +    + ++        L  +   +  +L      
Sbjct: 194 ATLDRTAERLAQTLTRDPVRIDVAGKAVVTAQVEQRWLRADGLEHKHRLLETLLGGEEFG 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF +T+    R    L+E   + + L G++ Q++R+  +Q +RDGR  V +ATDVAA
Sbjct: 254 KGIVFIATKLDADRLADTLSEKGHKAMPLHGDMQQRDRNRVVQWLRDGRINVIVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ DL  VI+ +L    E+ +HR GRTGRAG  G+S  +  +   R+   +    N 
Sbjct: 314 RGIDIADLTHVINFDLPKQAEDYVHRIGRTGRAGASGVSYSLFTRMEWRQVRAIEAYTNK 373

Query: 366 SVVWEPAPSVEAIRE 380
           +      P +E + E
Sbjct: 374 AADMHVLPGLEPMPE 388


>gi|70992287|ref|XP_750992.1| DEAD box  RNA helicase (Hca4) [Aspergillus fumigatus Af293]
 gi|74670609|sp|Q4WM60|DBP4_ASPFU RecName: Full=ATP-dependent RNA helicase dbp4
 gi|66848625|gb|EAL88954.1| DEAD box  RNA helicase (Hca4), putative [Aspergillus fumigatus
           Af293]
 gi|159124561|gb|EDP49679.1| DEAD box RNA helicase (Hca4), putative [Aspergillus fumigatus
           A1163]
          Length = 787

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 197/465 (42%), Gaps = 10/465 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F ++P  +     L+   Y  LT +Q   ++  L+ +D+L +A+TGSGKT+AF + +
Sbjct: 46  FKSFSDLPLSEPTASGLASSHYKTLTDIQSRAISHALKGRDILGAAKTGSGKTLAFLVPV 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 106 LENLY--RKQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLKEEQ 163

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +L+ +VLDEAD +LDLGF+  ++ I+   PK
Sbjct: 164 ERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAIIGHLPK 223

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  ++ LA+   +D   V +         S +    V+  L  + + + 
Sbjct: 224 ERQTLLFSATQTKKVSDLARLSLQDPEYVAVHETASSATPSKLQQHYVITPLPQKLDILW 283

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     +VF S+   V    +        +  +     Q++      +      +
Sbjct: 284 SFIRSNLKSKTMVFLSSGKQVRFVYESFRHLQPGIPLMHLHGRQKQGGRLDIVTRFSQSK 343

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G +V  +  + + 
Sbjct: 344 HCVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYEREGRAVLFLDPSEEE 403

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +   +  V +      + +   I+++      +DP      Q      V  +  + D
Sbjct: 404 GMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYLGQKAFISYVKSVYIQKD 463

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            E      L++            P       D  +    A +   
Sbjct: 464 KEIFKLKELKLDEFAASLGLPGAPRIKFIKGDDTKQRKNAPRAAA 508


>gi|321252297|ref|XP_003192357.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis ; Dbp3p [Cryptococcus gattii WM276]
 gi|317458825|gb|ADV20570.1| ATP-dependent RNA helicase of the DEAD-box family involved in
           ribosomal biogenesis, putative ; Dbp3p [Cryptococcus
           gattii WM276]
          Length = 639

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 124/478 (25%), Positives = 214/478 (44%), Gaps = 12/478 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+      A+   G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 167 NLSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLVPSVELL--S 224

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + I+PTRELA+Q+    + L         V +GG +   E   L  G 
Sbjct: 225 TLRFKPVNGTGVIIISPTRELALQIFGVAKELMQDHSQTFGVLMGGANRKAEADKLVKGV 284

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++        +LKA+V+DEAD +L++GF ++++ I+   P + R  M
Sbjct: 285 NLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQSM 344

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   +   L+
Sbjct: 345 LFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTFLK 404

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV    ++L      V+ L G+  QQ+R+N      +  A + + 
Sbjct: 405 KNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAPAGILLC 464

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ +I  +   +P + +HR GRT RAG+ G S+  +  +      R  
Sbjct: 465 TDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLFLLPSELGFL-RFL 523

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-A 418
           + A V +     P  + A  ++  + ++    +L++   D  +      A +  +KI   
Sbjct: 524 KVAKVPLNEYQFPQKKVADVQKQLESLISKNHYLNTSARDGYRSYLQAYASYSLKKIFDV 583

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
             L + + G      + P   +S        SR            K  +++  + G K
Sbjct: 584 NKLDLAKVGKAFGFSVPPKVNISVGSIKAKKSRDEDESSDDDGQPK-KAYYR-NRGRK 639


>gi|158514833|sp|A3LSN3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 741

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 125/523 (23%), Positives = 239/523 (45%), Gaps = 36/523 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   + + + + LS+ GY   + +Q A +   L  +D++  A TGSGKT A+ + + 
Sbjct: 222 TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPII 281

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL +  + +   +   + + PTRELA+QVG   + +      +   + +GG+++ ++ 
Sbjct: 282 ERLLYKPSKVA---STRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQE 338

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
           + L++   +V+ TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++ E +    
Sbjct: 339 QQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIP 398

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             KR+ L+FSAT++  I  L +   +  VR+ I       + +    V +   D     +
Sbjct: 399 KNKRQTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPAL 458

Query: 237 NILRYHGAKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                     A     +VF S + S  +   VL     +V  L G L+Q++R N +   +
Sbjct: 459 LFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFK 518

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR G S+  + ++
Sbjct: 519 KLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGES 578

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQ--DPLFLDSIQGDEKKMVDVL 407
              R          ++V +   S+E   ++ +   R +   D   L+ I   ++++++ +
Sbjct: 579 TSDR----------NIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEV 628

Query: 408 L-AKHDPEKIAAGFLRIHRAG-LCAPEEITPVSL-----VSGRDRFRDDSRAFKVGGGSR 460
           L  +   ++I    +++ +A  +   E+            S +D+ +  +   +      
Sbjct: 629 LDEEKQAKEILQAEMQLAKASNMMKHEKEIQSRPKRTWFESEKDKKKHQTEVMQQLTKHG 688

Query: 461 DNFKGSSWFSLSVGSKQKAE--ARWLMPMLCRSSGINRQSIGA 501
                    ++ V          +  +  +       +  IG 
Sbjct: 689 KKVNSKKRKAIEVKKDDGGRSYKKTKVDRITDQKRNPKAKIGN 731


>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
 gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
           subunits [Scheffersomyces stipitis CBS 6054]
          Length = 672

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 125/523 (23%), Positives = 239/523 (45%), Gaps = 36/523 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+   + + + + LS+ GY   + +Q A +   L  +D++  A TGSGKT A+ + + 
Sbjct: 159 TTFQTLQLSRPVLKGLSQLGYTKPSPIQSASIPIALLGRDIVAGAVTGSGKTAAYMIPII 218

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL +  + +   +   + + PTRELA+QVG   + +      +   + +GG+++ ++ 
Sbjct: 219 ERLLYKPSKVA---STRVIVLTPTRELAIQVGDVGKKIGQFVNNLNFGLAVGGLNLRQQE 275

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
           + L++   +V+ TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++ E +    
Sbjct: 276 QQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQVELTEILSLIP 335

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             KR+ L+FSAT++  I  L +   +  VR+ I       + +    V +   D     +
Sbjct: 336 KNKRQTLLFSATMNTKIQDLIQLSLQRPVRIMIDPPKTAATKLTQEFVRIRKRDHLKPAL 395

Query: 237 NILRYHGAKNA-----IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                     A     +VF S + S  +   VL     +V  L G L+Q++R N +   +
Sbjct: 396 LFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLGLLGMKVSELHGSLTQEQRLNNVNDFK 455

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR G S+  + ++
Sbjct: 456 KLIVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTARAGRDGTSISFVGES 515

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQ--DPLFLDSIQGDEKKMVDVL 407
              R          ++V +   S+E   ++ +   R +   D   L+ I   ++++++ +
Sbjct: 516 TSDR----------NIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEV 565

Query: 408 L-AKHDPEKIAAGFLRIHRAG-LCAPEEITPVSL-----VSGRDRFRDDSRAFKVGGGSR 460
           L  +   ++I    +++ +A  +   E+            S +D+ +  +   +      
Sbjct: 566 LDEEKQAKEILQAEMQLAKASNMMKHEKEIQSRPKRTWFESEKDKKKHQTEVMQQLTKHG 625

Query: 461 DNFKGSSWFSLSVGSKQKAE--ARWLMPMLCRSSGINRQSIGA 501
                    ++ V          +  +  +       +  IG 
Sbjct: 626 KKVNSKKRKAIEVKKDDGGRSYKKTKVDRITDQKRNPKAKIGN 668


>gi|320653569|gb|EFX21674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 457

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 205/409 (50%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +     + + W+  P+  +I       +L+  +    I G +K  + 
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIV------MLEAEMATLCIDGGKKAKMR 396



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVMLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|320038649|gb|EFW20584.1| ATP-dependent rRNA helicase RRP3 [Coccidioides posadasii str.
           Silveira]
          Length = 474

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 127/445 (28%), Positives = 210/445 (47%), Gaps = 22/445 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 48  KSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +            L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +  
Sbjct: 108 QALMDKPQSM------FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAI 161

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   PK
Sbjct: 162 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPK 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         +++    +D  ++ 
Sbjct: 222 ERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIY 281

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ IVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 282 LLNEFPGQSVIVFTRTVNETQRLANLLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNI 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q      +
Sbjct: 342 LVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQ 401

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+       +        E +            +  D +   ++  +  +   H+     
Sbjct: 402 RIEAALGKELDEYKVEKEEVM------------VLSDRVGEAQRHAITEMKELHENRGKK 449

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG 442
              LR  R G  A      +    G
Sbjct: 450 GATLRNRRLGKGAKRSRDEMDREEG 474


>gi|281208736|gb|EFA82911.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 698

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 115/421 (27%), Positives = 206/421 (48%), Gaps = 12/421 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   +A++E  +  +T +Q   + P L  +D+L +A+TGSGKT+AF +     
Sbjct: 196 FNSLPIEEKTKKAIAEMKFTKMTPIQAKTIMPLLEGRDLLGAARTGSGKTLAFLIPAIEI 255

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
           L+  N  F P +    + I+PTRELA+Q+       +   T     V  G      E   
Sbjct: 256 LVKAN--FKPRNGTGVIIISPTRELALQIYGVARELMLNHTQTHGLVIGGNNDKRAEIER 313

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+ G +++V TPGRL DH++      + +LK +V+DEAD +L++GF +D+  I+   PK+
Sbjct: 314 LEKGVNLLVCTPGRLLDHLQNTRGFIVKNLKCLVIDEADRILEVGFEEDMHQIVKLLPKE 373

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIV 236
           R+ ++FSAT +  +  +A+             ++R+ S +   +   V+     R   + 
Sbjct: 374 RQTMLFSATQTRKVDDIARVSFNKEPVYVGVDDDREVSTVEGLEQGYVVCPSEKRFLLLY 433

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  IVF S+  SV    ++L      V+   G+  QQ+R+N      +    
Sbjct: 434 TFLKKNLNKKVIVFLSSCNSVKYHAELLNFIGIPVLEFHGKQKQQKRTNTFYEFVNAEKG 493

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
           + I TDVAARG+D+P ++ +I  +   +P+  +HR GRT R  G+KG ++  +       
Sbjct: 494 ILICTDVAARGVDIPSVDWIIQFDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPQELTF 553

Query: 356 AERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + L + A V +     P  +    +D  ++++ +  +L +   D  K      A H  +
Sbjct: 554 LKYL-KLAKVPLNEYEFPQKKVSNVQDQLEKLVANNYYLHNSARDAYKSYIHSYASHSLK 612

Query: 415 K 415
            
Sbjct: 613 D 613


>gi|30678365|ref|NP_850492.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|42572223|ref|NP_974206.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|79295442|ref|NP_001030619.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|108861885|sp|Q8H136|RH14_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 14
 gi|6016713|gb|AAF01539.1|AC009325_9 RNA helicase, DRH1 [Arabidopsis thaliana]
 gi|3149952|dbj|BAA28347.1| DRH1 [Arabidopsis thaliana]
 gi|332640162|gb|AEE73683.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640164|gb|AEE73685.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
 gi|332640165|gb|AEE73686.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 619

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 6/363 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   +   G+   T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  R      P  L ++PTRELA Q+  E       + +      GG     + RD
Sbjct: 219 HL--QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +VA  ++   +  I
Sbjct: 337 QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQI 396

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   A+ G+ SQ ER N L   R GR  V 
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +         + A  
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 359 LFR 361
           L +
Sbjct: 517 LIK 519


>gi|256077046|ref|XP_002574819.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238660034|emb|CAZ31052.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 637

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 194/390 (49%), Gaps = 21/390 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +++ + +    Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ +
Sbjct: 179 SLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNNMIKQ 238

Query: 66  NDRFS---------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               S             P+AL +APTRELA Q+  +      ++ +   V  GG  +  
Sbjct: 239 GPGDSISATINNNRRKQFPVALILAPTRELASQIFDDARKFSYRSLIRPCVLYGGADMRT 298

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G +++V TPGRL D +    + + + + +VLDEAD MLD+GF   I  I++  
Sbjct: 299 QLMELSEGCNLLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQD 358

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + LMFSAT    I  LAK++  + + + +        +I    + V  + + 
Sbjct: 359 ALPPSGERQTLMFSATFPNEIQILAKDFLNNYIFLTVGRVGSTSENITQTILWVEENAKR 418

Query: 233 NAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + ++++          +VF  TR         L    FQV ++ G+ +Q++R  AL   R
Sbjct: 419 DTLIDLLAHSEAGTLILVFVETRRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFR 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            GR  V +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++       
Sbjct: 479 SGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            +N+ R    L  EAN ++     P ++AI
Sbjct: 539 NRNLARGLVELLEEANQAIP----PWLKAI 564


>gi|146313637|ref|YP_001178711.1| ATP-dependent RNA helicase RhlB [Enterobacter sp. 638]
 gi|189040028|sp|A4WG30|RHLB_ENT38 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|145320513|gb|ABP62660.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
          Length = 421

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 184/366 (50%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHYLLSNP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTPQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLTAIETYI 375

Query: 364 NVSVVW 369
             SV  
Sbjct: 376 GHSVPQ 381


>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 441

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 119/403 (29%), Positives = 199/403 (49%), Gaps = 15/403 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     + +AL E  +   T +Q   +   +  +D++  A TGSGKT+AF + + 
Sbjct: 4   KTFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDIIGIAPTGSGKTLAFVIPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER- 118
             L              A  ++PTRELA Q+  + E L A  GV   V +GG     ++ 
Sbjct: 64  HRLWDNPQ------GYFACVLSPTRELAYQISAQFEALGAAMGVQSVVIVGGDDDRVQQA 117

Query: 119 -RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R  Q    IV             KG ++  LK +VLDEAD +LDL F+ +I  I+ S P
Sbjct: 118 VRLAQKPHIIVATPGRLHDHLKSTKGFSLRSLKHLVLDEADRLLDLDFQREITEIMQSIP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIV 236
           K+R   +FSAT++  ++ L +    D VRV+ +              +L  L +++  +V
Sbjct: 178 KERCTYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLVQHYLLCPLVEKEVTLV 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVF  T A   R + +L    F  V L GEL+Q +R  A    + G+++
Sbjct: 238 YLINSLVQNLIIVFVRTVADAKRLSIILRSLGFDAVPLHGELTQSQRLGAFTRFKSGKSK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+D+P++++VI+ +  ++ ++ +HR GRT RAGR G S+ ++ Q      
Sbjct: 298 ILVATDVASRGLDVPNVDVVINYDTPTHSKDYIHRVGRTARAGRAGKSILMVTQYDAELM 357

Query: 357 ERLFREANVSVVWEP--APSVEAIRERDAQ--RILQDPLFLDS 395
            RL +  N  +   P     +  ++ER  +  R+ ++ L  +S
Sbjct: 358 LRLEKVLNQKLDLYPTDLQEIALLKERVVEAGRLARNQLNEES 400


>gi|62087546|dbj|BAD92220.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo
           sapiens]
          Length = 674

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 191 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 250

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 251 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 310

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 311 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 370

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 371 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 430

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 431 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 490

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 491 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 550

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 551 GLATSFFNERNINITKDLLDLLVEAKQEVP 580


>gi|74006722|ref|XP_861268.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 3 [Canis familiaris]
 gi|74006724|ref|XP_861300.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 4 [Canis familiaris]
 gi|74006730|ref|XP_861379.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 6 [Canis familiaris]
 gi|74006732|ref|XP_538003.2| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 1 [Canis familiaris]
          Length = 662

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|87196351|ref|NP_001347.3| ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
 gi|3023628|sp|O00571|DDX3X_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3X; AltName: Full=DEAD
           box protein 3, X-chromosomal; AltName: Full=DEAD box, X
           isoform; AltName: Full=Helicase-like protein 2;
           Short=HLP2
 gi|2148924|gb|AAB95637.1| helicase like protein 2 [Homo sapiens]
 gi|3523150|gb|AAC34298.1| DEAD box RNA helicase DDX3 [Homo sapiens]
 gi|15080078|gb|AAH11819.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|57209229|emb|CAI41416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Homo sapiens]
 gi|119579806|gb|EAW59402.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579807|gb|EAW59403.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579808|gb|EAW59404.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|119579809|gb|EAW59405.1| hCG19318, isoform CRA_a [Homo sapiens]
 gi|158255742|dbj|BAF83842.1| unnamed protein product [Homo sapiens]
 gi|168277370|dbj|BAG10663.1| ATP-dependent RNA helicase DDX3X [synthetic construct]
          Length = 662

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|283834551|ref|ZP_06354292.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
 gi|291069681|gb|EFE07790.1| ATP-dependent RNA helicase RhlB [Citrobacter youngae ATCC 29220]
          Length = 422

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALENKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADSKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTTQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 479

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 109/410 (26%), Positives = 200/410 (48%), Gaps = 13/410 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++S  G+ + T++Q  +L   L+ +D++  A+TGSGKT AFGL +   LL   
Sbjct: 58  LCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRT 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL +APTREL +Q+ +++  +    GV V   +GG+  + +   L    H
Sbjct: 118 QRF------YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPH 171

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VVG+PGR+ DH++      L    +  +   +    LD      +      SP +R+ +
Sbjct: 172 VVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTM 231

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  ++ L K   K  V++ + S+    S +    +LV    +   +   L +  
Sbjct: 232 LFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLS 291

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF +T A+  +    L    FQ V L G+++Q +R  AL   R       +AT+V
Sbjct: 292 PSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEV 351

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            +RG+D+P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q      +R+    
Sbjct: 352 GSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHAL 411

Query: 364 NVSVVW-EPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK 410
              +       + E +     +++L+      L++ + DE  +V     K
Sbjct: 412 GQKLEELTELTATEKVMPLH-EKVLEALRSAELEAREADEAALVQKAAKK 460


>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
 gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
          Length = 619

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/392 (27%), Positives = 183/392 (46%), Gaps = 13/392 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L +R     + +Q   +   L  +D++  A TGSGKT+ F L +  
Sbjct: 185 MK----FPKSILAGLEKRNIRKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPIVM 240

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGV 112
             L +  R  F     P  L I P+RELA Q    +++               A+ IGGV
Sbjct: 241 FSLEQEIRLPFMAKEGPYGLIICPSRELAKQTFDIVQYYCQHLQQAGMPEIRSALAIGGV 300

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V+     +Q G HI+V TPGRL D +  K + +   + + +DEAD M+D+GF +D+  I
Sbjct: 301 PVNEALAVIQQGCHIMVATPGRLMDMLDKKLVKLDVCRYLCMDEADRMIDMGFEEDVRTI 360

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   AK+     V +N+        ++      V    + 
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASMNVTQDVEYVKQEAKV 420

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +++ L+       ++F   +  V    + L     + VA+ G   Q+ER  +++  R 
Sbjct: 421 VYLLDCLQKTPPP-VLIFAEKKQDVDAIHEYLLMKGVEAVAIHGGKDQEERYRSVEGFRT 479

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G KG++   I +  
Sbjct: 480 QEKDVLVATDVASKGLDFPDVQHVINYDMPDDIENYVHRIGRTGRSGSKGLATTFINKAT 539

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           ++      +   +    +  P +  +     Q
Sbjct: 540 EQYVLLDLKHLLLEAKQKVPPFLAELCSETEQ 571


>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
 gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 388

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 110/362 (30%), Positives = 184/362 (50%), Gaps = 3/362 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +AL ++ Y     +QE  +   L+ KD+L  AQTGSGKT +F L +   L  + 
Sbjct: 16  LSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKTASFVLPILQML--QT 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
                     AL + PTRELAVQVG+  +         +        V    + +Q  G 
Sbjct: 74  KPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGGVSINPQMIQLQGV 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL D +  K + +S ++ +VLDEAD+ML+LGF++++  I    P+KR+ L+F
Sbjct: 134 EILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANIFKLLPQKRQNLLF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + T+ +    D V++ I +E +    I   A  V  + +   +  +++     
Sbjct: 194 SATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDARKGPLLRYLIKEQKMN 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F S+        + L  +     AL  + SQ  R+ AL+  + G   V +ATD+ +
Sbjct: 254 QVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKAGNIHVLVATDLMS 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+P L  VI+ EL  +P++ +HR GRTGRA   G+++ +I +        + ++   
Sbjct: 314 RGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEETHHFSVIQKKMGK 373

Query: 366 SV 367
            V
Sbjct: 374 KV 375


>gi|109124055|ref|XP_001115617.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like [Macaca
           mulatta]
          Length = 527

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 110/417 (26%), Positives = 182/417 (43%), Gaps = 18/417 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +     +     + G    T VQ   +   L  +D L  A+TGSGKT AF L +
Sbjct: 1   MSGFAELGLSSWLVAQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+V+ TPGRL DH+R            L     D   E     F  D+E IL 
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILA 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P +R+ L+FSAT++  +  L              +       +D R +LV    +D  
Sbjct: 175 AVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F +T  +      +L +  F  VAL   + Q+ER  AL   
Sbjct: 235 LVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    R+ IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR+G ++ ++ Q
Sbjct: 295 KSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVD 405
                   +  +    +        E ++      ++  +  + L++   DEKK ++
Sbjct: 355 YDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEIN 411


>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
 gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 479

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 109/410 (26%), Positives = 200/410 (48%), Gaps = 13/410 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++S  G+ + T++Q  +L   L+ +D++  A+TGSGKT AFGL +   LL   
Sbjct: 58  LCSELCASVSTLGWKSPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQRLLQRT 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF       AL +APTREL +Q+ +++  +    GV V   +GG+  + +   L    H
Sbjct: 118 QRF------YALILAPTRELCLQISQQILAMGGTLGVTVVTLVGGLDHNTQAIALAKKPH 171

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VVG+PGR+ DH++      L    +  +   +    LD      +      SP +R+ +
Sbjct: 172 VVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSPAERQTM 231

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  ++ L K   K  V++ + S+    S +    +LV    +   +   L +  
Sbjct: 232 LFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASHLQQHFLLVPFKLKHTHLAAALLHLS 291

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + IVF +T A+  +    L    FQ V L G+++Q +R  AL   R       +AT+V
Sbjct: 292 PSSVIVFTNTCANARKTALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATEV 351

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            +RG+D+P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q      +R+    
Sbjct: 352 GSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQRIEHAL 411

Query: 364 NVSVVW-EPAPSVEAIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAK 410
              +       + E +     +++L+      L++ + DE  +V     K
Sbjct: 412 GQKLEELTELTATEKVMPLH-EKVLEALRSAELEAREADEAALVQKAAKK 460


>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 474

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 210/445 (47%), Gaps = 22/445 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 48  KSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +            L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +  
Sbjct: 108 QALMDKPQSM------FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAI 161

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   PK
Sbjct: 162 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPK 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         +++    +D  ++ 
Sbjct: 222 ERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIY 281

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 282 LLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNI 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q      +
Sbjct: 342 LVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQ 401

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+       +        E +            +  D +   ++  +  +   H+     
Sbjct: 402 RIEAALGKELDEYKVEKEEVM------------VLSDRVGEAQRHAITEMKELHENRGKK 449

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG 442
              LR  R G  A      +    G
Sbjct: 450 GATLRNRRIGKGAKRSRDEMDREEG 474


>gi|115492529|ref|XP_001210892.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
 gi|121742586|sp|Q0CZS8|HAS1_ASPTN RecName: Full=ATP-dependent RNA helicase has1
 gi|114197752|gb|EAU39452.1| ATP-dependent RNA helicase DDX18 [Aspergillus terreus NIH2624]
          Length = 576

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 209/473 (44%), Gaps = 17/473 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +   +A+ + G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 104 NLSEPTMKAIRQMGFETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEML--S 161

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + I PTRELA+Q+    + L         + IGG +   E   L  G 
Sbjct: 162 ALRFKPRNGTGVIIITPTRELALQIFGVAKELCEFHSQTYGIVIGGANRRAEAEKLNKGV 221

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML- 183
           ++++ TPGRL DH++        + K +VLDEAD  LD+GF  ++  I+   P + R   
Sbjct: 222 NLLIATPGRLLDHLQNTQGFVYKNCKVLVLDEADRCLDVGFEAELRQIVKILPSEERQTL 281

Query: 184 ---MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                  T    +  ++       + V+   E+     +D   ++     R   +   L+
Sbjct: 282 LFSATQTTKVEDLARISLKPGPLYINVDHRKEHATVDGVDQGYIICEADKRFLLLFTFLK 341

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  I+F S+  +V  +  +L      V+AL G+L QQ R+       +      I 
Sbjct: 342 KNLKKKIIIFFSSCNAVKYYADLLNYIDLPVLALHGKLKQQTRTQRFFEFCNATQGTLIC 401

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P ++ +I  +    P+  +HR GRT R   G+ G S+ ++  +       
Sbjct: 402 TDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTARGTKGKIGRSIMLLQPSEVGFLN- 460

Query: 359 LFREANVSVVWEPAPSVEAI-RERDAQRILQDPLFLDSIQ--GDEKKMVDVLLAKHDPEK 415
           + REA V VV    P  + I  +   ++++    +L+ IQ   D  +      A H    
Sbjct: 461 VLREARVPVVEFEFPQKKIIDIQSQLEKLIGQNYYLNQIQSAKDGYRAYLHAYASHSLRS 520

Query: 416 I----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           +        +++ ++          ++L +   + +  +R           FK
Sbjct: 521 VFNINKLDLVKVAKSFGFTTPPRVDITLGASMSKDKVQARRPYGSQNKSARFK 573


>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
 gi|118595828|sp|Q1E1N5|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
          Length = 474

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 126/445 (28%), Positives = 210/445 (47%), Gaps = 22/445 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 48  KSFKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +            L +APTRELA Q+ ++ E L +   V  AV +GG+ +  +  
Sbjct: 108 QALMDKPQSM------FGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAI 161

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   PK
Sbjct: 162 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPK 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+++S   Q         +++    +D  ++ 
Sbjct: 222 ERRTYLFSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIY 281

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ I+F  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 282 LLNEFPGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNI 341

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++LV++ +L S+ +  +HR GRT RAG+ G +  ++ Q      +
Sbjct: 342 LVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQ 401

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           R+       +        E +            +  D +   ++  +  +   H+     
Sbjct: 402 RIEAALGKELDEYKVEKEEVM------------VLSDRVGEAQRHAITEMKELHENRGKK 449

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSG 442
              LR  R G  A      +    G
Sbjct: 450 GATLRNRRIGKGAKRSRDEMDREEG 474


>gi|293468098|ref|ZP_06664510.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
 gi|291321476|gb|EFE60914.1| ATP-dependent RNA helicase rhlB [Escherichia coli B088]
          Length = 427

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 22  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 81

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 82  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 142 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 201

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 202 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 261

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 262 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 321

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 322 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 381

Query: 364 NVSVV 368
             S+ 
Sbjct: 382 GHSIP 386


>gi|237727904|ref|ZP_04558385.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
 gi|226910353|gb|EEH96271.1| ATP-dependent RNA helicase rhlB [Citrobacter sp. 30_2]
          Length = 422

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPTTQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|72384374|ref|NP_062426.2| nucleolar RNA helicase 2 [Mus musculus]
 gi|74213643|dbj|BAE35625.1| unnamed protein product [Mus musculus]
 gi|112180476|gb|AAH43655.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
 gi|148700139|gb|EDL32086.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Mus
           musculus]
          Length = 851

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 241/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 673

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 674 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 731

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 732 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRRW 775

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 776 QLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 816


>gi|327402381|ref|YP_004343219.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327317889|gb|AEA42381.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 410

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 177/379 (46%), Gaps = 10/379 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  +  ++ EA+   G+ N T VQ+  +   L   D+L  AQTG+GKT AF L + 
Sbjct: 1   MKFNELGLNDLVLEAIHHMGFENATPVQQLSIPEILANNDLLACAQTGTGKTAAFILPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + L  + D     ++   L + PTRELAVQ+ +E++ L     V          G     
Sbjct: 61  NKLTGKED-----TSINTLILVPTRELAVQIEQEIQGLSYFVSVGSMAVYGGGDGTRWEE 115

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++  L  G  I+V TPG+L  HI    ++ S L+ +VLDEAD+MLD+GF DDIE I+   
Sbjct: 116 QKSALVEGTDIIVATPGKLLSHIMQGYVDFSQLEHLVLDEADKMLDMGFSDDIERIISHL 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAI 235
           PKKR+ L+FSAT+   I  LA     +   + ++          +         ++    
Sbjct: 176 PKKRQTLLFSATMPSKIKNLASKILINPKEIALSISKPAAGVTQHVVLCFDDQKNKTLDF 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +   R       I   +          +          +S  L Q+ER   L+  R  R 
Sbjct: 236 ILKGRPEYDSIIIFTSAKIKVHEIVYALKRAGYKNTQGVSSNLEQEEREEVLRGFRSKRT 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDV +RGID+ ++ LVI+ +   + E+ +HR GRT RA  KG +  +I      +
Sbjct: 296 RILVATDVMSRGIDIKEINLVINYDAPRDAEDYVHRIGRTARANTKGEAYTLINPKDMPK 355

Query: 356 AERLFREANVSVVWEPAPS 374
             R+ R   + +     P 
Sbjct: 356 LARIERLIEMEIQRASIPE 374


>gi|311276166|ref|XP_003135075.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Sus
           scrofa]
          Length = 662

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNANITKDLLDLLVEAKQEVP 568


>gi|302854279|ref|XP_002958649.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
 gi|300256038|gb|EFJ40315.1| hypothetical protein VOLCADRAFT_69703 [Volvox carteri f.
           nagariensis]
          Length = 582

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 184/372 (49%), Gaps = 14/372 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  N+   I   ++   Y   T +Q   L   L  +D+L  A+TGSGKT +F + +
Sbjct: 134 IESFQEMNLHPNILADIAHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPM 193

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHR 116
               L +     P   P+AL +APTRELA Q+ RE+      +      ++ +GGV +  
Sbjct: 194 IQHCLNQPP-LRPGDGPMALVLAPTRELAQQIEREVRAFSRSSSRNVRTSIVVGGVPMQE 252

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R DL+NG  +VV TPGR  D ++    N+S +  VVLDEAD MLD+GF   I+ ++++ 
Sbjct: 253 QRHDLRNGVEVVVATPGRFIDLLQQSYTNLSRVSYVVLDEADRMLDMGFEPQIKEVMNNL 312

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P + + L+FSAT+   I  LA+ Y    V V I + +   +++  R        + + +V
Sbjct: 313 PPRHQTLLFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVAQRLEHAPEGQKLDILV 372

Query: 237 NILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            ++                 IVF   +         L E      AL G L Q ER  AL
Sbjct: 373 ALISSEVAAEASGGPPMPLTIVFVERKNRCDEVAAALQEDGIPANALHGGLGQFEREAAL 432

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +    G  +V +ATD+A+RG+D+  +  VI+ +L    E+ +HR GRTGRAG KG +  +
Sbjct: 433 RDFAKGHIKVLVATDLASRGLDVKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSL 492

Query: 348 IPQNMQRRAERL 359
                     ++
Sbjct: 493 WNDRDSFLVAQI 504


>gi|293414669|ref|ZP_06657318.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
 gi|291434727|gb|EFF07700.1| ATP-independent RNA helicase DbpA [Escherichia coli B185]
          Length = 457

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIDQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G A 
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAC 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|18395852|ref|NP_566141.1| DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase
           [Arabidopsis thaliana]
 gi|16226725|gb|AAL16243.1|AF428313_1 AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|15215694|gb|AAK91393.1| AT3g01540/F4P13_9 [Arabidopsis thaliana]
 gi|32306509|gb|AAP78938.1| At3g01540 [Arabidopsis thaliana]
 gi|332640163|gb|AEE73684.1| DEAD-box ATP-dependent RNA helicase 14 [Arabidopsis thaliana]
          Length = 618

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 6/363 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   +   G+   T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  R      P  L ++PTRELA Q+  E       + +      GG     + RD
Sbjct: 219 HL--QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 276

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR
Sbjct: 277 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 336

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +VA  ++   +  I
Sbjct: 337 QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQI 396

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   A+ G+ SQ ER N L   R GR  V 
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 456

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +         + A  
Sbjct: 457 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 516

Query: 359 LFR 361
           L +
Sbjct: 517 LIK 519


>gi|74006728|ref|XP_850382.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 2 [Canis familiaris]
          Length = 663

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|68069123|ref|XP_676472.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56496186|emb|CAH99280.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 393

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 188/375 (50%), Gaps = 8/375 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L+  D +  AQ+G+GKT  F ++ 
Sbjct: 22  VDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISS 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +        A  AL +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 82  LQLINYD------YVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  + L +  LK  +LDEADEML  GF+  I  +      
Sbjct: 136 DKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++ +FSAT+   I  L   + +D   + +  +      I +   +     + + + ++
Sbjct: 196 DIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIQFYVAVEKEEWKLDTLCDL 255

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +I++C+TR  V   T+ +   LF V  + G++ Q++R   ++  R G  RV 
Sbjct: 256 YETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 315

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+ ARGID+  + LVI+ +L  +P+  +HR GR+GR GRKG+++  +  + + + + 
Sbjct: 316 VTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDKL 375

Query: 359 LFREANVSVVWEPAP 373
              E+  S   E  P
Sbjct: 376 KKIESYYSTQIEEMP 390


>gi|311281534|ref|YP_003943765.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308750729|gb|ADO50481.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 421

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 189/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPTVIEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +   + P AL +APTRELAVQ+  + E L + +G+ + +  GG    ++ + L+NG 
Sbjct: 76  AMENRQVNQPRALIMAPTRELAVQIHADAEPLASASGLKLGLAYGGDGYDKQLKVLENGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ R   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYARQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNDEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G SV +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSVSLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 170/366 (46%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+  G+   T +Q   +   +  KDVL S++TGSGKT+AF L      +   
Sbjct: 23  LDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLASSKTGSGKTLAFLLPAMQR-MYRG 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+       L + PTRELA QV  +L  L A T    A+ +GG + + + ++ +    
Sbjct: 82  KPFTRRDQ-RVLILTPTRELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPM 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGR  DH+  +  ++  L+ ++LDEAD MLDLGF   +  I    +   ++  M 
Sbjct: 141 FVVATPGRFADHLEHRSTSLDGLEMLILDEADRMLDLGFAPQLRRIHELANHRRRQTLMF 200

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +      I   ++            S            +   L  +   +  +L    
Sbjct: 201 SATMDNEDVIEMASEMLNAPKRLSVGNSNEEHTDITQRFYLCDHLDHKQALLDKVLETED 260

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TDV
Sbjct: 261 YNQVIIFTATRADTDRLTAELNERKLKAVALSGNLNQNQRNSIMSQFERVCHKILVTTDV 320

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++     +  + +    
Sbjct: 321 ASRGLDIDGVSHVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKSVEAYL 380

Query: 364 NVSVVW 369
             S+ +
Sbjct: 381 QQSISF 386


>gi|239611619|gb|EEQ88606.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis ER-3]
 gi|327348365|gb|EGE77222.1| ATP-dependent RNA helicase DED1 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 692

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 186/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 198 ITAFTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 257

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S  L      + A+          P AL + PTREL  Q+  E      +T +   V  
Sbjct: 258 LSQSLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 317

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    ++++H++ +VLDEAD MLD+GF   I
Sbjct: 318 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQI 377

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAV 224
             I+  S    + +  +   S       +   ++ ++ +I        +   +       
Sbjct: 378 RRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVE 437

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             +  D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 438 CESDKDKDSALLDILCTDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 497

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 498 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIS 557

Query: 345 VFVIPQNMQRRAER----LFREANVSVV 368
                ++   +  R    L ++AN  V 
Sbjct: 558 TAFFSRSKNFKIARSMVDLLKDANQEVP 585


>gi|226329673|ref|ZP_03805191.1| hypothetical protein PROPEN_03583 [Proteus penneri ATCC 35198]
 gi|225202859|gb|EEG85213.1| hypothetical protein PROPEN_03583 [Proteus penneri ATCC 35198]
          Length = 294

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 105/272 (38%), Gaps = 23/272 (8%)

Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           + E+ +HR GRTGRAGR G ++  +    +R    + R   +++     P+ E I +R  
Sbjct: 2   DSESYVHRIGRTGRAGRAGRAILFVDNRERRLLRNIERTMKMTIPEVELPNAELISQRRQ 61

Query: 384 QRILQDPLF------LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG----LCAPEE 433
           ++  Q          LD  +    K+        D E +AA  L++ +      L     
Sbjct: 62  EKFAQQIAQQLETSNLDQYRALLPKLAPQGEEALDMETLAAVLLKMAQGERALILPPDPV 121

Query: 434 ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSG 493
             P    + RD  R D+   +     R +      + + VG     E R ++  +     
Sbjct: 122 RRPRREFNDRDDRRRDNDRERSPRRERRDAGEMDLYRIEVGRDDGVEVRHIVGAIANEGD 181

Query: 494 INRQSIGAIRVQPDLTFVEVSA----DGVDLLRRTVKLDKGIQLKYLGGEKP-------- 541
           I+ + IG I++    + +E+      D +    RT  ++K + ++ +G  +         
Sbjct: 182 ISSRYIGNIKLYGSHSTIELPKGMPTDLLSHFTRTRIMNKPLNMQLVGDAQSQPFRERRN 241

Query: 542 -DFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
              R  +  G +  ++ D   +R    +G  +
Sbjct: 242 NSRRDGQPQGGRRFSNGDQPQRRGNNDRGGER 273


>gi|291241720|ref|XP_002740759.1| PREDICTED: probable ATP-dependent RNA helicase DDX46-like
           [Saccoglossus kowalevskii]
          Length = 1091

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 107/378 (28%), Positives = 192/378 (50%), Gaps = 5/378 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + L +  Y   T +Q   +   +  ++++  A+TGSGKT+AF L +   ++ + 
Sbjct: 431 VSKKVLDVLKKLKYEKPTPIQAQAIPAIMSGRNLIGIAKTGSGKTLAFLLPMFRHIM-DQ 489

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D       PLA+ ++PTRELA+Q+ +E +       V      GG  +  +  +L+ GA 
Sbjct: 490 DPLEADDGPLAVIMSPTRELAMQIYKECKRFCRALNVRGVCVYGGTGISEQIAELKRGAE 549

Query: 127 IVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D      G+  N+     VVLDEAD M D+GF   +  I+D+    R+ +
Sbjct: 550 IIVCTPGRMIDMLTANSGRVTNLRRCTYVVLDEADRMFDMGFEPQVMRIVDNIRPDRQTV 609

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    +  LA+      + V +   +   SD++ +  +V    +   ++ +L  + 
Sbjct: 610 MFSATFPRQMEALARRILNKPLEVQVGGRSVVCSDVEQKVAIVDDDQKFLTLLELLGVYQ 669

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            + + +VF   +    +  K L +  +  ++L G + Q +R +A+Q  + G  ++ IAT 
Sbjct: 670 EQGSVLVFVEKQEGADQLLKDLMKASYSCLSLHGGIDQYDRDSAIQDFKAGNIKLLIATS 729

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I     R A  + + 
Sbjct: 730 VAARGLDVKHLVLVVNYDCPNHYEDYVHRVGRTGRAGNKGNAFTFITPEQGRYAGDIIKA 789

Query: 363 ANVSVVWEPAPSVEAIRE 380
             ++    P   ++   E
Sbjct: 790 FEMADKKAPPELLQLWSE 807


>gi|218187595|gb|EEC70022.1| hypothetical protein OsI_00586 [Oryza sativa Indica Group]
          Length = 754

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 179/369 (48%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q+  E + + G+   T +Q       LR +D++  A+TGSGKT+ + +     +L + 
Sbjct: 234 LTQLATEWVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIP--GFILLKR 291

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    P  L ++PTRELA Q+  E +     + +      GG     + RDL+ GA 
Sbjct: 292 LQHNSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGAD 351

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+
Sbjct: 352 IVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 411

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  +A +       V +    +   +  I     ++   ++   +  ILR    
Sbjct: 412 ATWPKEVRKIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEP 471

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I+   +   +           +   A+ G+ SQ ER + L   R GR  + +ATDVA
Sbjct: 472 GSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVA 531

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFR 361
           ARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++         + A    ++  
Sbjct: 532 ARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 591

Query: 362 EANVSVVWE 370
            AN SV  +
Sbjct: 592 GANQSVSQQ 600


>gi|312969491|ref|ZP_07783693.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
 gi|312286038|gb|EFR13956.1| ATP-dependent RNA helicase rhlB [Escherichia coli 2362-75]
          Length = 421

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PGRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|51245265|ref|YP_065149.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
 gi|50876302|emb|CAG36142.1| related to ATP-dependent RNA helicase [Desulfotalea psychrophila
           LSv54]
          Length = 424

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 182/364 (50%), Gaps = 2/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + ++E+GY   + +Q   +   L ++DV+  A TG+GKT  F L +   LL+  
Sbjct: 8   LCDELLQTVAEQGYTTPSQIQTEAIPVVLNQRDVMAVAHTGTGKTAGFTLPMVQ-LLSGG 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P +   AL I PTRELA QV   ++   +   +      GGV +  +   LQ G  
Sbjct: 67  DSPQPCT-VRALVITPTRELAAQVAESVQTYGSMMNIRTGAAFGGVRIEPQIAKLQAGLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + ++   LK +VLDEAD MLDLGF DDI  I    P KR+ LMFS
Sbjct: 126 VLVATPGRLLDLYNQQAVSFDALKILVLDEADRMLDLGFIDDIRHIQTLLPAKRQTLMFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA     D V + + ++      I  +   V    +   ++++++ +  + 
Sbjct: 186 ATFSEEIKSLAGGMLHDPVLIEVDTDKNIVDSIKQKMHPVDQERKSALLIHLIKKYNWQQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+         L E      ++    +Q  R+ AL   ++G   V +ATD+A+R
Sbjct: 246 LLVFSRTKRGADTLVTQLKEAGINAESIHANRTQYARTRALDGFKNGSVVVLVATDIASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    E+ +HR GRTGRAG  G++V    ++  ++   + +     
Sbjct: 306 GIDVHQLPCVINFDLPYVAEDYVHRIGRTGRAGTSGLAVSFFSEDEAQQLASIEKLIGRK 365

Query: 367 VVWE 370
              +
Sbjct: 366 FERD 369


>gi|37528482|ref|NP_931827.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39931722|sp|Q7MYL2|RHLB_PHOLL RecName: Full=ATP-dependent RNA helicase rhlB
 gi|36787920|emb|CAE17037.1| ATP-dependent RNA helicase RhlB [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 428

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 193/393 (49%), Gaps = 14/393 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAF 68

Query: 60  STLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL          + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ 
Sbjct: 69  HYLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  I++GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KILESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPP 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               +   FSAT+S  +  LA      A  + +    +    I       +  ++   + 
Sbjct: 189 VNERMNLLFSATLSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        I+F +T+         LA    +V  L+G+++Q++R   L+   +G   
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             +      S+          + + ++Q +L+D
Sbjct: 369 PAIEDYIQHSIP---------VSKYNSQALLKD 392


>gi|326433585|gb|EGD79155.1| helicase pitchoune [Salpingoeca sp. ATCC 50818]
          Length = 649

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 111/423 (26%), Positives = 194/423 (45%), Gaps = 12/423 (2%)

Query: 3   IFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +F N+     +   +A+   G+ ++T +Q   +   L  +D+L +A+TGSGKT+AF +  
Sbjct: 171 LFTNLADKVSEPTMKAIEGFGFTHMTEIQYKTIPFLLTGRDLLGAAKTGSGKTLAFLIPA 230

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +F+P +    + + PTRELA Q+   L  L         + IGG     E 
Sbjct: 231 VERL--RQLKFTPKNGTGCIILTPTRELAQQIYGVLISLLEHHHQTHGISIGGSDKKAEA 288

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L NG +I+V TPGRL DH++        L+ +++DEAD +L +GF D +  I+   P+
Sbjct: 289 RRLGNGVNILVCTPGRLLDHLQNTNFKFDRLQMLIIDEADRILQIGFEDTMRAIVRLIPQ 348

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSDRDNAI 235
           KR+ ++FSAT +  +  LA+   +         +         I+   V+     R   +
Sbjct: 349 KRQTVLFSATQTRKVEDLARISLRGEPLYIGVDDKADIATADGIEQGYVICPSDQRFRLL 408

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  +  +VF S+  SV    +        V+ + G   Q +RS       +   
Sbjct: 409 YTFLKKNLKRKLMVFFSSCDSVEFHLQFFNYVSLPVLGIHGRQKQAKRSRTFFEFCNAEQ 468

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQR 354
            + + TDVAARG+D+P+++ +I  +   +P+  +HR GRT R AGRKG ++  +      
Sbjct: 469 GILLCTDVAARGLDIPEVDWIIQYDAPDDPKEYIHRVGRTARGAGRKGRALLFLLPTEVE 528

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + L  E  V +     P  + A  +    +I++   F   +     +      A H  
Sbjct: 529 FLKYLM-ENKVPLNEYEFPKDKIANVQSKYYQIMEKSYFFRKLAISGFRSYVHAYAAHSL 587

Query: 414 EKI 416
           + +
Sbjct: 588 KAV 590


>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 412

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 22  LSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 80  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 140 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+     S+I    + V    +   + +++       
Sbjct: 200 ATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 260 ALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 320 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIESRLGHL 379

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 380 IERRVVEGFE 389


>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
 gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
          Length = 398

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL--RQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 126 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+     S+I    + V    +   + +++       
Sbjct: 186 ATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERRVVEGFE 375


>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
          Length = 686

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 196/425 (46%), Gaps = 19/425 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 173 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFR 232

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++  
Sbjct: 233 PKRV---FATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 289

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ ++
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  +  L K      +R++     R+   +    V +  +   N     +++   
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 409

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       IAT
Sbjct: 410 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 469

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +  + +   + + +
Sbjct: 470 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    +     P    ++            +   I   E +   V+ A+ D   +    +
Sbjct: 530 KVGSKLKSRVIPEQSIVK------------WSQIIDEMEDQYSAVISAERDERALRKAEM 577

Query: 422 RIHRA 426
              +A
Sbjct: 578 EFAKA 582


>gi|197364704|ref|YP_002144341.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226739549|sp|B5BIS9|RHLB_SALPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197096181|emb|CAR61777.1| putative ATP-dependent RNA helicase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 421

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 114/365 (31%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRVPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|254430075|ref|ZP_05043782.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196196244|gb|EDX91203.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 428

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 121/401 (30%), Positives = 204/401 (50%), Gaps = 6/401 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   +++ G+   T +Q  +L   L   D +  AQTG+GKT AF + + + LL  
Sbjct: 29  DLHLDLMHGIADSGFQYCTPIQAEVLTHTLAGADAIGRAQTGTGKTAAFLITVINDLLKH 88

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                  A  P AL +APTRELA+Q+ ++ + L   T   V++V  G     ++ R    
Sbjct: 89  PIDVQRFAGEPRALIVAPTRELAMQIEKDAKVLAKHTDLQVMSVVGGMNFNRQQERLQNK 148

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
              I+V TPGRL D  + + L +  ++ +VLDEAD MLD+GF  D++ I+  +P  + R+
Sbjct: 149 LIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQ 208

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT +  +  L++ + +DA  V I         ++ +  +    D+   + N++  
Sbjct: 209 TQLFSATFNDDVMNLSRRWTQDAEVVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITG 268

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF + R    R +  L +   +V  +SG++ Q +RS  L+  R G  +V IAT
Sbjct: 269 MNMDKVIVFANRRDITRRVSDRLHKKGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIAT 328

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  GMS+    ++       L  
Sbjct: 329 DVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPELEN 388

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              + +  E  P+ + + E++    ++ P   D+ Q  EKK
Sbjct: 389 AIGMKLECEYPPA-DLLAEKETAAPMKAPG-HDTTQNAEKK 427


>gi|117919870|ref|YP_869062.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
 gi|117612202|gb|ABK47656.1| 4a-hydroxytetrahydrobiopterin dehydratase [Shewanella sp. ANA-3]
          Length = 427

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 189/382 (49%), Gaps = 4/382 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   LSE  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L       
Sbjct: 19  PLCNRLSELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAE 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHI 127
             A     L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SA
Sbjct: 139 LVATPGRLLDLLASNALKLNRVSALVLDEADRMLSLGFTDELNQVLEALPSKKQTLLYSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +  ++ SE       + R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRALTAKLLHQPLEYHLQSEQESTI--EQRVITVNREQKTALLAHLIKQHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
           V E  P  EA  E   + + Q+
Sbjct: 377 VREQIPGFEANAEMPLEVLAQE 398


>gi|325192108|emb|CCA26569.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325192439|emb|CCA26875.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 648

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 113/384 (29%), Positives = 179/384 (46%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE    P+ I +AL  +     T +Q   L   L  +D++  A TGSGKT+ F L L
Sbjct: 195 IKSFEMMRFPEAILKALKAKKINRPTPIQVQALPCILSGRDLIGIAFTGSGKTITFTLPL 254

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWL-------YAKTGVVVAVCI 109
               L E  +        P  + + P+REL  Q    ++                + +  
Sbjct: 255 IMFALEEEMKMPIIGQEGPFGIIVGPSRELMRQTFEVVQHFTEALSAAGYPQLRSLLLIG 314

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G     +     + G HIVV TPGRL   ++   +N+   K + LDE D MLDLGF +++
Sbjct: 315 GEDKRTQCELIARKGVHIVVATPGRLNHLLKTNEMNLRLCKYICLDEGDRMLDLGFDEEV 374

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I +    +R+ L+FSAT+       AK      V VN+      + D+      V   
Sbjct: 375 SAIFNHFTSQRQTLLFSATMPQKFQDFAKQVLVKPVFVNVGRAGAANLDVIQEVEYVKQD 434

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+  G    I FC  +  V    + L     Q V + G   Q+ER+ A+ +
Sbjct: 435 AKIVYLLECLQKTGPPVMI-FCEKKGDVDDIYEYLILKGIQAVGIHGGKDQKERNEAIDL 493

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            ++G+  V IATD+AA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I 
Sbjct: 494 FKNGQKDVLIATDIAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFIN 553

Query: 349 ---PQNMQRRAERLFREANVSVVW 369
              P+++    + L  EA  SV  
Sbjct: 554 KNVPESVLLDLKHLLVEAKQSVPP 577


>gi|2580550|gb|AAC51829.1| dead box, X isoform [Homo sapiens]
 gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens]
          Length = 662

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|66363178|ref|XP_628555.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
 gi|46229820|gb|EAK90638.1| eIF4A-1; eukaryotic translation initiation factor 4A-1; RNA SFII
           helicase [Cryptosporidium parvum Iowa II]
          Length = 396

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 183/373 (49%), Gaps = 8/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE   +   +   +   G+   +++Q   + P ++ +D ++ +Q+G+GKT  F +   
Sbjct: 22  NTFEEMGLKDNLLRGIYSYGFEFPSAIQRRAIVPIIQGRDTIIQSQSGTGKTCVFSVGAL 81

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                     S  + P+ L ++PTRELA Q  +    +     +    CIGG  +  + +
Sbjct: 82  EIC-----SKSKENVPMVLILSPTRELAEQSEKVCTSIGDYLDIRAHSCIGGKKLKDDIK 136

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +G  I+ GTPGR+   I    L+   +K +++DEADEM D GF+  +  I    P +
Sbjct: 137 ALNSGVSIISGTPGRVLQMIEQGYLSTKKIKLLIIDEADEMFDYGFKTQVYDIYKYLPPR 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNI 238
            + ++ SAT+   I  +A+ + ++ +++ +  E      I      +     +   + ++
Sbjct: 197 IQTVLVSATLPDDILVMAQKFMRNPLQILVPKEEVSLDKIRQYHVQVEEEKWKFETLCDL 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +I+FC+T+  V   +K + E+ F V  + G+L Q  R   L+  R+G+ RV 
Sbjct: 257 YDTLTVTQSIIFCNTKNKVEWLSKKMMENHFTVSFVHGDLPQVTREEILREFREGKTRVL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+  RGID+  + LV++ +L  N E  +HR GR+GR GR G+++ +I +  +     
Sbjct: 317 ITTDLWGRGIDVQQVNLVVNYDLPINKELYIHRIGRSGRFGRSGIAINLITKEDESMLSL 376

Query: 359 LFREANVSVVWEP 371
           L R  ++ +   P
Sbjct: 377 LERFYSIKISKLP 389


>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 843

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 134/495 (27%), Positives = 223/495 (45%), Gaps = 21/495 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  + + I  AL++      T +QE  +   L  KD+  SAQTGSGKT AF L +
Sbjct: 215 VDTFADFKLSRPILRALNQMELTKPTLIQEYAIPMALLGKDICASAQTGSGKTAAFLLPI 274

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R +   A   + I P RELA Q    L  L   T +  A+ +GG+ +  + 
Sbjct: 275 LERLQLRTRRIA---ATRVIIICPVRELATQCQSVLIKLARFTDITSALVVGGLPLKAQE 331

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L+    I+V TPGR+ DH      +++  L+ +VLDEAD +L+LGF ++I+ I+   P
Sbjct: 332 LELRTCPDIIVCTPGRMIDHLRNSPSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCP 391

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNA 234
           + R+ ++FSAT++  I  L     K  VR+           +    V +  +    RD  
Sbjct: 392 RARQTMLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAI 451

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +      +  IVF  T+    R   +      +   L G L+QQER +AL+  R G 
Sbjct: 452 LLALCTRAFTQKTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGA 511

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + + TDVAARGID+  +  VI+ E+  +    +HR GRT RAG+ G +V +  +  + 
Sbjct: 512 VDILLCTDVAARGIDVKGVRAVINYEMPKDITTYVHRVGRTARAGQVGRAVTLTSEYRRL 571

Query: 355 RAERLFREANVSVVWEPAP-SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             +++ R  +        P SV    +   Q + QD   + + +  EK+M +V       
Sbjct: 572 IMKQVTRHCHGFAKSRAVPDSVITQWKAKIQSLQQDITHILTEEKVEKRMHNVEKEARRA 631

Query: 414 EKIAA----GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
           + + +       R  R    + +E   +   +   R  D S   + G   +    G S  
Sbjct: 632 QNLISYQDEITSRPARTWFVSEKEKKKIQENAAIQRLEDQSAEAERGKSKKRKADGDS-- 689

Query: 470 SLSVGSKQKAEARWL 484
                   +A+ + L
Sbjct: 690 -----GADEAKPKHL 699


>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
 gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
           RNA helicase(C-terminal) (rhlE-like) [Ralstonia
           solanacearum CFBP2957]
          Length = 603

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 202/398 (50%), Gaps = 19/398 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  AL E  Y   T VQ   +   L  +D+LV++QTGSGKT AF L     +  + 
Sbjct: 37  LDERIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFILPAIQRISEQP 96

Query: 67  DRFSPAS-----------------APLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVC 108
           +   P                    P  L + PTRELA+QV             +  A  
Sbjct: 97  EPQRPRMDGAPQRVKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYGRHLRRIVCASI 156

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
           +GG+   ++   L     I++ TPGRL DHI    +++S L  +V DEAD MLD+GF DD
Sbjct: 157 LGGMPYPKQLDMLARMPDIIIATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADD 216

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VA 227
           IE I+ ++P+ R+MLMFSAT+   I  LA+   ++  R+ IA+     S+I+ R      
Sbjct: 217 IEAIVGATPESRQMLMFSATMDRRIEQLAERMMREPQRIEIAAARVDQSNIEERLHFTDD 276

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +S +   + ++LR    K AIVF +T+       + L E  F   AL G++ Q  R+  L
Sbjct: 277 MSHKQQLLDHLLRDASLKQAIVFTATKRDADSLAERLTETGFAAGALHGDMHQGARNRTL 336

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
             +R G  R+ +ATDVAARGID+PD+  V++ +L    E+ +HR GRTGRAGR G+++ +
Sbjct: 337 TALRRGHLRILVATDVAARGIDVPDITHVVNFDLPKQAEDYVHRIGRTGRAGRSGIAINL 396

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
           +      +  R+ R  +  +       +E  R    +R
Sbjct: 397 VNHGDTFQWRRIERFVDRRINATVVEGLEPKRAPKPRR 434


>gi|226480840|emb|CAX73517.1| ATP-dependent RNA helicase DDX3X [Schistosoma japonicum]
          Length = 637

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 189/381 (49%), Gaps = 17/381 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +++ + +    Y   T VQ+  +      +D++  AQTGSGKT AF + + + ++ +
Sbjct: 179 SLHKIVRDNVELANYERPTPVQKHAIPIIASGRDLMACAQTGSGKTAAFLIPILNNMIKQ 238

Query: 66  NDRFS---------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
               S             P+AL +APTRELA Q+  +      ++ +   V  GG  +  
Sbjct: 239 GPGDSICATIDSNRRKQFPVALILAPTRELASQIFDDARKFSYRSSIRPCVLYGGADMRT 298

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L  G +++V TPGRL D +    + + + + +VLDEAD MLD+GF   I  I++  
Sbjct: 299 QLMELSKGCNVLVATPGRLSDVLERGRVGLDYCRFLVLDEADRMLDMGFEPQIRRIVEQD 358

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + LMFSAT    I  LAK++    + + +        +I    + V  + + 
Sbjct: 359 ALPPSGERQTLMFSATFPHEIQILAKDFLSSYIFLTVGRVGSTSENITQTILWVEENAKR 418

Query: 233 NAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           +A++++          +VF  T+         L    FQV ++ G+ +Q++R  AL   R
Sbjct: 419 DALIDLLANSEAGTLTLVFVETKRGADALENYLYSQKFQVASIHGDRTQEDRELALSCFR 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            GR  V +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++       
Sbjct: 479 SGRTPVLVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK 538

Query: 349 PQNMQRRAERLFREANVSVVW 369
            +N+ R    L  EAN +V  
Sbjct: 539 NRNLARGLVELLEEANQAVPP 559


>gi|168462889|ref|ZP_02696820.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195634348|gb|EDX52700.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 457

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTTFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKTWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|300794325|ref|NP_001179891.1| ATP-dependent RNA helicase DDX3X [Bos taurus]
 gi|297493243|ref|XP_002700250.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos
           taurus]
 gi|296470612|gb|DAA12727.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Bos taurus]
          Length = 661

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 178 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 237

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 238 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 357

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 358 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 418 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 538 GLATSFFNERNINITKDLLDLLVEAKQEVP 567


>gi|291407356|ref|XP_002719895.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Oryctolagus cuniculus]
          Length = 661

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNVNITKDLLDLLVEAKQEVP 568


>gi|255950086|ref|XP_002565810.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592827|emb|CAP99195.1| Pc22g19070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 682

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 195/392 (49%), Gaps = 24/392 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +    YV  T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 198 VTQFTNPPLDDHLIANIKLASYVIPTPVQKYSVPIVMNGRDLMACAQTGSGKTGGFLFPI 257

Query: 59  ASTLLAENDRFSPASA--------------PLALAIAPTRELAVQVGRELEWLYAKTGVV 104
            S         +P                 P +L +APTREL  Q+  E      ++ V 
Sbjct: 258 LSQAFQNGPSAAPVQGGGGQFSYGRQRKAYPTSLILAPTRELVSQIFEEARKFAYRSWVR 317

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
             V  GG  +  + R ++ G  ++V TPGRL D I    ++++++K +VLDEAD MLD+G
Sbjct: 318 PCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLANIKYLVLDEADRMLDMG 377

Query: 165 FRDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           F   I  I           R+ LMFSAT    I  LA+++ KD + +++        +I 
Sbjct: 378 FEPQIRRIVEGEDMPVVDNRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENIT 437

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            +   V  +D+ + +++IL  HG+    ++F  T+      +  L    F   A+ G+ +
Sbjct: 438 QKVEYVEDADKRSVLLDILHTHGSTGLTLIFVETKRMADSLSDFLINQRFPATAIHGDRT 497

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER  AL++ R+GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG
Sbjct: 498 QRERERALELFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAG 557

Query: 340 RKGMSVFVIPQNMQ---RRAERLFREANVSVV 368
             G++     +  +   R    L +EA+  V 
Sbjct: 558 NTGIATAFFNRGNRGVVRDLLELLKEAHQEVP 589


>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 448

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 178/374 (47%), Gaps = 5/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + ++L   G    T +QE  +   L  KD++ S++TGSGKT+AF L     L+  +
Sbjct: 8   LDQRLLQSLKHMGIDTPTEIQEQAIPVALAGKDLMASSKTGSGKTLAFLLPAMQRLI--S 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  + + PTRELA QV  +L  L A T       +GG + + + + L    H
Sbjct: 66  CKALSKRDPRVVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAKALSRDPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGRL DH++   L+++ L+ ++LDEAD MLDLGF + ++ I    D   ++  M 
Sbjct: 126 FVVATPGRLADHLKQHHLHLNGLELLILDEADRMLDLGFAEQLKMINAAADHKRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +           +  +        A             +   L  ++  +  IL+   
Sbjct: 186 SATLDHGDVNDIANELLKFPEHVAIGAGNLEHKDITQRIFLCDHLDHKEAILTRILKEEQ 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R    LA   F+  +LSGEL Q  R+  +     G  ++ + TDV
Sbjct: 246 QKQIIIFTATRQDTDRLATKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++         ++    
Sbjct: 306 ASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWINFTQVQTFL 365

Query: 364 NVSVVWEPAPSVEA 377
           N +  +     ++A
Sbjct: 366 NKTFNFSELEGLKA 379


>gi|71895253|ref|NP_001025971.1| ATP-dependent RNA helicase DDX3X [Gallus gallus]
 gi|60098425|emb|CAH65043.1| hypothetical protein RCJMB04_2a4 [Gallus gallus]
          Length = 651

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 171 IESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 230

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 231 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 290

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 291 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 350

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 351 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 410

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 411 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 470

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 471 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 530

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 531 GLATSFFNERNINITKDLLDLLVEAKQEVP 560


>gi|327485295|gb|AEA79701.1| ATP-dependent RNA helicase VCA0061 [Vibrio cholerae LMA3894-4]
          Length = 448

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 66  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 366 QQEIQFEVLAGLE 378


>gi|297834766|ref|XP_002885265.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331105|gb|EFH61524.1| hypothetical protein ARALYDRAFT_479365 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 569

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 121/423 (28%), Positives = 205/423 (48%), Gaps = 12/423 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+  ++ +    A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +   
Sbjct: 94  QTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIRPLLEGKDVLGAARTGSGKTLAFLIPAV 153

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL  +  FSP +    + I PTRELA+Q     E L       V + IGG +   E +
Sbjct: 154 ELLLKHH--FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVGMVIGGNNRRSEAQ 211

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            + NG+++++ TPGRL DH+         HLK +V+DEAD +L+  F +D+  IL   PK
Sbjct: 212 RIANGSNLLIATPGRLLDHLHNTKAFIYKHLKCLVIDEADRILEDNFEEDMNKILKILPK 271

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
            R+  +FSAT +  +  LA+      V V++    R+ ++   +    +V   +R   ++
Sbjct: 272 TRQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKNRLILLI 331

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  +VF ST  SV    +++         + G L Q  R+         +  
Sbjct: 332 TFLKKNPNKKIMVFFSTCKSVQFHAEIMKISNVDFCDIHGGLDQNRRTKTFFDFMKAKKG 391

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVF-VIPQNMQR 354
           + + TDVAARG+D+P ++ +I  +    P   +HR GRT R  G KG ++  +IP+ +Q 
Sbjct: 392 ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ- 450

Query: 355 RAERLFREANVSVVWEPAPSVEAIRER-DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + A V V        + +  R + ++ + +   L+ +  D  +        H  
Sbjct: 451 -FIRYLKAAKVPVKELEFNERKLMNVRSELEKCVAEDYNLNKLAKDAYRAYISAYNSHSL 509

Query: 414 EKI 416
           + I
Sbjct: 510 KDI 512


>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 435

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 198/371 (53%), Gaps = 10/371 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+  N+ + I  AL E  +   T VQ+  +  +L  KDV+V ++TGSGKT AF + + +
Sbjct: 1   MFDSMNLRKEILTALHEMKFEEPTEVQKQAIPLELEGKDVVVKSKTGSGKTAAFVIPILN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++     +        A+ I PTRELA+QV   +  +     +      GG S++ + R+
Sbjct: 61  SIEKNERQA-------AMIITPTRELALQVTEVVREIGRHMQLKAVTIYGGASINYQIRE 113

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NGA+I++GTPGRL D ++ + LN   ++ +VLDE D MLD+GF DDI++IL   PKKR
Sbjct: 114 IRNGANIIIGTPGRLIDLMKRRELNTDSIRFLVLDEVDIMLDMGFIDDIKYILSKLPKKR 173

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSATI   I  +  NY  + + VNI +     + I +   + + SD+   ++  L 
Sbjct: 174 QTMFFSATIPEEIKHITLNYTNNPINVNIDAGEVTVNTIQHFYSIASGSDKFATLLAYLN 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AI+FC T+ +  +   ++     Q V + G LSQ  R      M      + IA
Sbjct: 234 EKKPEKAIIFCKTQRNAEKIHSIMQNMGMQAVLMHGGLSQN-RREHSLNMFKEGVNMLIA 292

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+ ++  +I+ +  ++P+  +HR GR+ R G+ G +  +     +     + 
Sbjct: 293 TNVAARGLDIDNVSDIINFDAETDPKAYVHRVGRSARMGKSGKAFTIFTHGEKYLVYEIE 352

Query: 361 REANVSVVWEP 371
             A V + +  
Sbjct: 353 NYAKVKLSYLE 363


>gi|255746112|ref|ZP_05420059.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
 gi|255735866|gb|EET91264.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
          Length = 448

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 66  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 366 QQEIQFEVLAGLE 378


>gi|261204854|ref|XP_002627164.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
 gi|239592223|gb|EEQ74804.1| ATP-dependent RNA helicase ded1 [Ajellomyces dermatitidis SLH14081]
          Length = 692

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 186/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 198 ITAFTNPPLHEHLLSNILLARYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 257

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S  L      + A+          P AL + PTREL  Q+  E      +T +   V  
Sbjct: 258 LSQSLHRRGPEAEATRGLGRQQKAYPTALILGPTRELVSQIYEEARKFCYRTALHPRVVY 317

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    ++++H++ +VLDEAD MLD+GF   I
Sbjct: 318 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLAHIQYLVLDEADRMLDMGFEPQI 377

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAV 224
             I+  S    + +  +   S       +   ++ ++ +I        +   +       
Sbjct: 378 RRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVVE 437

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
             +  D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 438 CESDKDKDSALLDILCTDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 497

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 498 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGIS 557

Query: 345 VFVIPQNMQRRAER----LFREANVSVV 368
                ++   +  R    L ++AN  V 
Sbjct: 558 TAFFSRSKNFKIARSMVDLLKDANQEVP 585


>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658650|emb|CAZ29702.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 875

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 172/368 (46%), Gaps = 9/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + +  + + T +Q       L  +D++  AQTGSGKT +F L          
Sbjct: 84  FPSYIMSVIKKSKWDSPTPIQCQGWPVALSGRDLVGIAQTGSGKTASFLLPAIVH-AKAQ 142

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L + PTRELA QV +  E      G   A   GG S   +   L     
Sbjct: 143 PSLKRGDGPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEALGQSPE 202

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  ++      R+ LM+S
Sbjct: 203 VVIATPGRLLDFLESRHTNMRRCTYLVLDEADRMLDMGFEPSIRRVVSQVRPDRQTLMWS 262

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++  D +++N+ S     + +I     ++  S++   ++++L      
Sbjct: 263 ATWPREVKALAEDFLYDYIQINVGSTKLSANHNIRQHVEILNESEKFKRLLSLLNSFDNA 322

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+       + L +  F   A+ G+  Q+ER  AL         V +ATDVA+
Sbjct: 323 RVLVFTETKKRTDELCQKLQDKGFDATAMHGDKHQKERDRALDSHIS----VLVATDVAS 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FRE 362
           RG+D+ D+  +I+ +  S  E+ +HR GRTGR+ +KG +         R A  L    +E
Sbjct: 379 RGLDINDVRYIINYDYPSQTEDYIHRIGRTGRSDKKGTAYTFFSAKQPRLARELIEVLKE 438

Query: 363 ANVSVVWE 370
           A  ++  E
Sbjct: 439 ARQTIPDE 446


>gi|153831249|ref|ZP_01983916.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229522732|ref|ZP_04412148.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|229527951|ref|ZP_04417342.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|297579800|ref|ZP_06941727.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
 gi|148873269|gb|EDL71404.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|229334313|gb|EEN99798.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
 gi|229340717|gb|EEO05723.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
 gi|297535446|gb|EFH74280.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae RC385]
          Length = 452

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|148226262|ref|NP_001080283.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus laevis]
 gi|27924277|gb|AAH44972.1| Pl10-prov protein [Xenopus laevis]
          Length = 697

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 198/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++   ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 220 IECFQDVDMGEIIMGNIQLTRYTRPTPVQKHAIPIIIGKRDLMACAQTGSGKTAAFLLPI 279

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           L +N R+      PL+L +APTRELAVQ+  E      ++ V   
Sbjct: 280 LSQIYADGPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC 339

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 340 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 399

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 400 PQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQK 459

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 460 VVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 519

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G+  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 520 DREEALHQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 579

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 580 GLATSFFNEKNINITKDLLDLLVEAKQEVP 609


>gi|15600832|ref|NP_232462.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153823246|ref|ZP_01975913.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227811688|ref|YP_002811698.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229506763|ref|ZP_04396272.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229510442|ref|ZP_04399922.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229517427|ref|ZP_04406872.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229605237|ref|YP_002875941.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254850327|ref|ZP_05239677.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|298499926|ref|ZP_07009732.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
 gi|9657444|gb|AAF95975.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519233|gb|EAZ76456.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae B33]
 gi|227010830|gb|ACP07041.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
 gi|229345463|gb|EEO10436.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
 gi|229352887|gb|EEO17827.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
 gi|229357114|gb|EEO22032.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
 gi|229371723|gb|ACQ62145.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
 gi|254846032|gb|EET24446.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
 gi|297541907|gb|EFH77958.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae MAK 757]
          Length = 452

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|301755322|ref|XP_002913508.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Ailuropoda
           melanoleuca]
          Length = 654

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 530

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 132/396 (33%), Positives = 197/396 (49%), Gaps = 23/396 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 55  LSADVVSALTAAGYQNPTPVQQRAVPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFSQLQ 114

Query: 65  ----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAV 107
                              R  P + P  L + PTRELA+QV                  
Sbjct: 115 KAQASQPREPRPADGGRGRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTVS 174

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF +
Sbjct: 175 ILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIE 234

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-V 226
           DIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I        
Sbjct: 235 DIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRMEQRTNIAQTVHYVD 294

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+  
Sbjct: 295 DRDHKDRLLDHLLRDAGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNRT 354

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V 
Sbjct: 355 IRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAVS 414

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           ++    Q   +R+ R     +   P   VE    R 
Sbjct: 415 LVHHAEQGALKRIERFVRTPL---PVNVVEGFEPRK 447


>gi|221059063|ref|XP_002260177.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193810250|emb|CAQ41444.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 398

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 188/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F ++ 
Sbjct: 22  VDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISS 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +        A  AL +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 82  LQLINYD------VVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  + L +  LK  +LDEADEML  GF+  I  +      
Sbjct: 136 DKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D   + +  +      I    V +     + + + +
Sbjct: 196 DIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +I++C+TR  V   T+ +   LF V  + G++ Q++R   ++  R G  RV
Sbjct: 256 LYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+ ARGID+  + LVI+ +L ++P+  +HR GR+GR GRKG+++  +  + + + +
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPTSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDK 375

Query: 358 RLFREANVSVVWEPAP 373
               E+  S   E  P
Sbjct: 376 LKKIESYYSTQIEEMP 391


>gi|33594923|ref|NP_882566.1| putative ATP-dependent RNA helicase [Bordetella parapertussis
           12822]
 gi|33564999|emb|CAE39946.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 582

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 6/378 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  ALSE G+   TSVQ A +   +   D++VS+QTGSGKT AF L   +
Sbjct: 38  SFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALN 97

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            +  +    +       L + PTRELA+QV            G+  A  +GG+    + +
Sbjct: 98  RIAHQPG--NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLK 155

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++V TPGRL DH++   + ++ +  +VLDEAD MLD+GF +DIE I++  PK+
Sbjct: 156 ALSRRVDVLVATPGRLIDHLKAGRVKLNTVHTLVLDEADRMLDMGFIEDIETIIERLPKE 215

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNI 238
           R+ L+FSAT+  ++  LA+   ++  R+ IA   ++H++I    +    +  +   + ++
Sbjct: 216 RQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADDAAHKMRLLDHV 275

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AIVF +T+         LA+  F   AL G+++Q++R+  L  ++ G+ RV 
Sbjct: 276 LRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVL 335

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +   ++ +L    E+ +HR GRTGRAGR G +  +     + +  R
Sbjct: 336 VATDVAARGIDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRR 395

Query: 359 LFREANVSVVWEPAPSVE 376
           +      S+  E    +E
Sbjct: 396 IEHYIGQSINAEVIAGLE 413


>gi|333007298|gb|EGK26780.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-272]
 gi|333019294|gb|EGK38578.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-227]
          Length = 457

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         +   G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTSCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLDQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|15234166|ref|NP_195063.1| DEAD-box protein abstrakt, putative [Arabidopsis thaliana]
 gi|75337897|sp|Q9SZB4|RH43_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 43
 gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis thaliana]
 gi|7270285|emb|CAB80054.1| putative protein [Arabidopsis thaliana]
 gi|332660816|gb|AEE86216.1| putative DEAD-box ATP-dependent RNA helicase 43 [Arabidopsis
           thaliana]
          Length = 542

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 126/426 (29%), Positives = 199/426 (46%), Gaps = 32/426 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  +   L ++G ++ T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 96  IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L E      +    P+AL I P+RELA Q    +E   A         +   +CIG
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIG 215

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV +  +   ++ G HIVV TPGRL D +  K +++   + + LDEAD ++DLGF DDI 
Sbjct: 216 GVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            + D    +R+ L+FSAT+   I   A +     V VN+      + D+      V    
Sbjct: 276 HVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 335

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +A V    + L     + VA+ G   Q++R  A+ + 
Sbjct: 336 KIVYLLECLQKTTPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLF 394

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G+  V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I +
Sbjct: 395 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINK 454

Query: 351 NMQR----RAERLFREANVSVVWE------PAPSVEAIRERD-----------AQRILQD 389
           N         + L +EA   +         P    E I                 RILQ 
Sbjct: 455 NQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQC 514

Query: 390 PLFLDS 395
           P F   
Sbjct: 515 PKFEHQ 520


>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
 gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
          Length = 1138

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 186/381 (48%), Gaps = 5/381 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   +++ G+   T +Q   L   L  +D++  A+TGSGKTV++   L   +L + 
Sbjct: 69  FDEELMRQITKLGFEKPTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPLLIHILDQR 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L +APTREL  QV  E +       + V   +GG + H + + L+ G  
Sbjct: 129 E-LEKNEGPIGLILAPTRELCQQVYTESKRYAKIYNISVGALLGGENKHEQWKMLKAGVE 187

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL + I+ K  N+     VV+DEAD+M  +GF   I  I+      R+ L+F+
Sbjct: 188 ILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDRQTLLFT 247

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG--A 244
           AT+   I  L  +  ++ V + I  EN+ + DI    ++   S+  +  +          
Sbjct: 248 ATLKKKIQNLVMDVLRNPVTIKIGGENQANEDIRQEPIIFKDSNFKDQWILNNLNLCLQK 307

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +   + ++ ++++ + L+    +      Q     +         + IATDVA
Sbjct: 308 GKVLIFVNHITNCNKLSELIKQRLYLEALVLHGDKIQSERTDIINKFKAAKNLLIATDVA 367

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERLFREA 363
           +RG+D+P+++ VI+ +L  + +  +HR GRTGRAG   G +  +I  +  + A  + +  
Sbjct: 368 SRGLDIPEIKTVINYDLPQDTDTYIHRIGRTGRAGATDGTAYSLILMSESKFASDMLKVM 427

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            +S    P P++E +   D Q
Sbjct: 428 EISGQPVP-PNLEEVAMNDDQ 447


>gi|26368308|dbj|BAB26817.2| unnamed protein product [Mus musculus]
          Length = 832

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 241/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 241 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 300

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 301 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 358

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 359 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 418

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 419 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 478

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 479 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 537

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 538 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 597

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 598 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 654

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 655 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 712

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 713 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRRW 756

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 757 QLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 797


>gi|150016621|ref|YP_001308875.1| DEAD/DEAH box helicase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903086|gb|ABR33919.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
           NCIMB 8052]
          Length = 369

 Score =  183 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G  + T +Q+  +      KDV+  A TG+GKT+AF L L   +    
Sbjct: 8   LSDDLIKILNKSGIADPTPIQKQSIPKIRDGKDVIAEAATGTGKTLAFLLPLLENIN--- 64

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S ++   AL + PTRELA+Q+  E   L     + +    GG  +  + + L N  H
Sbjct: 65  ---SKSNEIQALILTPTRELAIQITNEANKLKEFNDINILPVYGGKDIASQLKKLNNNIH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  +LDEAD+ML +GF++++E I+   P+K+++L FS
Sbjct: 122 LIIATPGRLLDHLERKTIDLSKLKTFILDEADQMLLMGFKNEVESIISKMPRKKQLLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI  ++  LA  Y KD + V I  ++     I+   V      + +A+  +L       
Sbjct: 182 ATIDSSVKKLAYRYMKDPIEVFIKQDDISLDAIEQDIVETTDRKKRDALCKVLDEDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V     VL    +    L  ++ Q +R   ++  R+   +  IATDVAAR
Sbjct: 242 AIIFCRTKRRVDELEAVLHTRKYNCEKLHSDIPQNKRERIMKSFRNAEIQYLIATDVAAR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + ++  + E+ +HR GRTGRAG  G +   I     +    +       
Sbjct: 302 GLDINGITHIYNYDIPESVESYIHRIGRTGRAGESGYTCMFIDPKNIKDVNEIEGAIGFK 361

Query: 367 V 367
           +
Sbjct: 362 I 362


>gi|296105329|ref|YP_003615475.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059788|gb|ADF64526.1| ATP-dependent RNA helicase RhlB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 421

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 114/366 (31%), Positives = 185/366 (50%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLTQATGLKIGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIEAYI 375

Query: 364 NVSVVW 369
             S+  
Sbjct: 376 GHSIPQ 381


>gi|149633893|ref|XP_001512924.1| PREDICTED: similar to helicase like protein 2 [Ornithorhynchus
           anatinus]
          Length = 651

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 192/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 165 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 224

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 225 LSQIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 284

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 285 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 344

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++     +      +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 345 PQIRRIVEQDTMPQKGIRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 404

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 405 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 464

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 465 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 524

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 525 GLATSFFNERNINITKDLLDLLVEAKQEVP 554


>gi|300937578|ref|ZP_07152392.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300457386|gb|EFK20879.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AIT ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAITAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|227204273|dbj|BAH56988.1| AT3G13920 [Arabidopsis thaliana]
          Length = 398

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/351 (31%), Positives = 181/351 (51%), Gaps = 7/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390


>gi|156089263|ref|XP_001612038.1| DEAD/DEAH box domain containing protein [Babesia bovis]
 gi|154799292|gb|EDO08470.1| DEAD/DEAH box domain containing protein [Babesia bovis]
          Length = 509

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/453 (24%), Positives = 213/453 (47%), Gaps = 12/453 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   L+E  +   T +Q   +   L+ KDVL  A TGSGKT+AF + LA  L   
Sbjct: 48  DLSEPLINGLTELNFERTTEIQAKCIPHLLQGKDVLGKAHTGSGKTLAFLVPLAEVLF-- 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    L I+PTREL+ Q     + +       + + +GG +   E   L  G 
Sbjct: 106 QVKFMPRNGTGGLIISPTRELSEQTFAVAKDVLKYLPQTIGLVMGGTNRRGEAERLSRGI 165

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I++ TPGRL DH++        +L  +++DEAD +L++GF +++  I+   PKKR+  +
Sbjct: 166 NILIATPGRLLDHMQNTKGFLYKNLLVLIIDEADRILEIGFEEEMNQIIKLLPKKRQTCL 225

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNILRYHG 243
           FSAT +  +  + +    + V V   S++       +   V+    +R   + + L+ H 
Sbjct: 226 FSATHTSKVEDMVRLSMTNPVFVQACSKDVATVATLEQGYVVCEAENRFMLLFSFLKRHL 285

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  +VF S+  SV     +L      V ++ G+  Q +RS+A     + +  + + TDV
Sbjct: 286 DKKIMVFFSSGNSVKFHDALLNYIDIAVKSIYGKKQQNKRSSAYYSFCNAKTGILLCTDV 345

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERLFRE 362
           AARG D+P ++ ++  +  S+P + +HR GRT R A  +G ++  +          L +E
Sbjct: 346 AARGWDIPKVDWIVQYDPPSDPRDYIHRVGRTARGADGEGRAIMFLMPEELGFLHYL-KE 404

Query: 363 ANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI----A 417
             V +        +  + +   +++++   +L+    +  +        H  + I    +
Sbjct: 405 LKVPLSKYEFELNKIAKVQVQLEKLVEKNFYLNRASREAYRSYLQAYLSHSLKDIFNVHS 464

Query: 418 AGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDD 449
              +R+ ++ G   P ++     ++ R +   +
Sbjct: 465 LDLIRVAKSFGFSNPPKVDLNIKITDRKKRPRE 497


>gi|114048765|ref|YP_739315.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-7]
 gi|113890207|gb|ABI44258.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 479

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 199/370 (53%), Gaps = 7/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 29  LKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 89  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+F
Sbjct: 143 HIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     +
Sbjct: 203 SATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 263 SAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 323 RGLDIDALDAVFNYHVAFDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLER 382

Query: 366 SVVWEPAPSV 375
            +  E  PS+
Sbjct: 383 DIQSEALPSL 392



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+  N        +  G K+K     ++  L   +GI    +G I V     +V V+   
Sbjct: 396 GTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKV 455

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 456 AKKALSKITSGR 467


>gi|322784405|gb|EFZ11376.1| hypothetical protein SINV_10914 [Solenopsis invicta]
          Length = 626

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 182/383 (47%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+     + I   L ++G V  T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 184 LKAFKEMKFHKGILYGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIASTGSGKTLVFVLPI 243

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +     F     P  L I P+RELA Q    +              +   + IG
Sbjct: 244 IEFCLEQEIDMPFIKKEGPYGLIICPSRELAKQTFDIIRHYTNSIRQTDCPEIRCCLAIG 303

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +  G HI+V TPGRL D +  K + +S  + + +DEAD M+D+GF +D+ 
Sbjct: 304 GVPVSESLAVINKGVHIMVATPGRLMDMLHKKMVTLSVCRYLCMDEADRMIDMGFEEDVR 363

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 364 TIFSFFRGQRQTLLFSATMPKRIQNFARSALVKPVTINVGRAGAASMNVVQEVEYVKQEA 423

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G + Q+ERS +++  
Sbjct: 424 KIVYLLECLQKTAPP-VLIFAEKKRDVDAIHEYLLIKGVEAVAIHGGIDQEERSRSVEAF 482

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R GR  V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GR G++   I  
Sbjct: 483 RAGRKDVLVATDVASKGLDFAEVQHVINYDMPDDVENYVHRIGRTGRSGRTGIATTFINK 542

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 543 ANDESVLLDLKHLLMEAKQKVPP 565


>gi|170769827|ref|ZP_02904280.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
 gi|170121265|gb|EDS90196.1| ATP-dependent RNA helicase RhlB [Escherichia albertii TW07627]
          Length = 421

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 187/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|162418242|ref|YP_001605106.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165926343|ref|ZP_02222175.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939710|ref|ZP_02228253.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009474|ref|ZP_02230372.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213643|ref|ZP_02239678.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167402073|ref|ZP_02307552.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420915|ref|ZP_02312668.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425993|ref|ZP_02317746.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|270488784|ref|ZP_06205858.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294505532|ref|YP_003569594.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
 gi|162351057|gb|ABX85005.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Angola]
 gi|165912400|gb|EDR31034.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921867|gb|EDR39064.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991396|gb|EDR43697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205316|gb|EDR49796.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961044|gb|EDR57065.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048547|gb|EDR59955.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055141|gb|EDR64940.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262363598|gb|ACY60319.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D106004]
 gi|262367526|gb|ACY64083.1| ATP-dependent RNA helicase RhlB [Yersinia pestis D182038]
 gi|270337288|gb|EFA48065.1| DEAD/DEAH box helicase [Yersinia pestis KIM D27]
 gi|294355991|gb|ADE66332.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Z176003]
          Length = 423

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 11  LHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 70

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 71  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 131 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 190

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 191 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 250

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 251 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 310

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 311 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 370

Query: 364 NVSVV 368
             S+ 
Sbjct: 371 GHSIP 375


>gi|45442928|ref|NP_994467.1| ATP-dependent RNA helicase RhlB [Yersinia pestis biovar Microtus
           str. 91001]
 gi|45437795|gb|AAS63344.1| putative DEAD-box helicase [Yersinia pestis biovar Microtus str.
           91001]
          Length = 422

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|22124274|ref|NP_667697.1| ATP-dependent RNA helicase RhlB [Yersinia pestis KIM 10]
 gi|51594521|ref|YP_068712.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           32953]
 gi|108806147|ref|YP_650063.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Antiqua]
 gi|108810260|ref|YP_646027.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Nepal516]
 gi|145600737|ref|YP_001164813.1| ATP-dependent RNA helicase RhlB [Yersinia pestis Pestoides F]
 gi|153947434|ref|YP_001399175.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|153997075|ref|ZP_02022208.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|170026246|ref|YP_001722751.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis YPIII]
 gi|186893519|ref|YP_001870631.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis PB1/+]
 gi|218930872|ref|YP_002348747.1| ATP-dependent RNA helicase RhlB [Yersinia pestis CO92]
 gi|229837202|ref|ZP_04457367.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|229839562|ref|ZP_04459721.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229900125|ref|ZP_04515262.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900428|ref|ZP_04515557.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|32363372|sp|Q8ZAD8|RHLB_YERPE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|56749471|sp|Q66G19|RHLB_YERPS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122979817|sp|Q1CBQ4|RHLB_YERPA RecName: Full=ATP-dependent RNA helicase rhlB
 gi|123073645|sp|Q1CNK3|RHLB_YERPN RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040087|sp|A4TRC8|RHLB_YERPP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|189040117|sp|A7FD47|RHLB_YERP3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739238|sp|B2K046|RHLB_YERPB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739239|sp|B1JQ11|RHLB_YERPY RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21957043|gb|AAM83948.1|AE013636_6 putative ATP-dependent RNA helicase [Yersinia pestis KIM 10]
 gi|51587803|emb|CAH19405.1| putative DEAD-box helicase [Yersinia pseudotuberculosis IP 32953]
 gi|108773908|gb|ABG16427.1| DEAD-box helicase [Yersinia pestis Nepal516]
 gi|108778060|gb|ABG12118.1| putative DEAD-box helicase [Yersinia pestis Antiqua]
 gi|115349483|emb|CAL22456.1| putative DEAD-box helicase [Yersinia pestis CO92]
 gi|145212433|gb|ABP41840.1| DEAD-box helicase [Yersinia pestis Pestoides F]
 gi|149289381|gb|EDM39459.1| putative DEAD-box helicase [Yersinia pestis CA88-4125]
 gi|152958929|gb|ABS46390.1| ATP-dependent RNA helicase RhlB [Yersinia pseudotuberculosis IP
           31758]
 gi|169752780|gb|ACA70298.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186696545|gb|ACC87174.1| DEAD/DEAH box helicase domain protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229682447|gb|EEO78534.1| ATP-dependent RNA helicase [Yersinia pestis Nepal516]
 gi|229686905|gb|EEO78984.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695928|gb|EEO85975.1| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229706145|gb|EEO92154.1| ATP-dependent RNA helicase [Yersinia pestis Pestoides A]
 gi|320013530|gb|ADV97101.1| ATP-dependent RNA helicase [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 428

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ EAL  +G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEDFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|301171467|ref|NP_001180345.1| ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
          Length = 661

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|226478852|emb|CAX72921.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Schistosoma japonicum]
          Length = 527

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 114/452 (25%), Positives = 217/452 (48%), Gaps = 14/452 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  + +  A+   G+ ++T +Q   +   L  +D++  A+TGSGKT+AF + +   
Sbjct: 52  FEDLPISEPVKRAIKVMGFTHMTDIQNKCIPQLLEHRDIMACAKTGSGKTLAFLIPVVEL 111

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +L+      P +   A+ I+PTREL++Q    L  L   T + + + +GG +   E ++L
Sbjct: 112 MLSLG--LQPRNGTGAIIISPTRELSLQTYGVLTELIQFTNLRIGLIMGGSNRQTEAQNL 169

Query: 122 QNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + G  I+V TPGRL DH    K     +LKA+V+DEAD +LD+GF  ++  I+   P  R
Sbjct: 170 EKGVTILVATPGRLLDHLTNTKFFLRHNLKALVIDEADRLLDIGFEVEMRQIIKLLPTVR 229

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT++     LA         +  ++         ++   V+ + S R   +   
Sbjct: 230 QTMLFSATLNEKTKNLANAALKASCVMVGSVPDNEATVEGLEQGYVVCSPSKRFCLLYTF 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R + +K  +VF ++   V  + ++L      V+A+ G   Q +R++         A V 
Sbjct: 290 IRKNKSKKIMVFMASCMEVKFYYELLNFVDTPVLAIHGRQKQAKRTSTFLQFIKAEAAVL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDV ARG+D+P ++ ++  +   + +  +HR GRT RAG  G ++ V+  +       
Sbjct: 350 LCTDVGARGLDIPKVDWILQYDPPDDAKEYIHRVGRTARAGSTGNALLVLRPHELEFL-S 408

Query: 359 LFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFL-----DSIQGDEKKMVDVLLAKHD 412
           + R+A V VV     + + A  +   ++++ +  FL     ++ +G  +      L+  +
Sbjct: 409 ILRKARVKVVEYEIANSKMADVQPALEKLVTNNYFLSLSAHEAFKGIVRAYASSCLSCFN 468

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
             ++              P+    V     R+
Sbjct: 469 VNELDLAATARTCGLSTTPKVDLNVKPKRTRE 500


>gi|254787708|ref|YP_003075137.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
 gi|237686799|gb|ACR14063.1| DEAD/DEAH box helicase [Teredinibacter turnerae T7901]
          Length = 426

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 184/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL++ G+ + + +Q   L   L   DVL  AQTG+GKT AF +A+   LL +
Sbjct: 47  DLSSQVARALADMGFEHCSPIQAKSLPYSLSGHDVLGKAQTGTGKTAAFLIAVFEDLLRQ 106

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                  A  P AL IAPTREL +Q+ ++   +    G  V  +  G     + +     
Sbjct: 107 PAPEERFAGEPRALVIAPTRELVMQIAKDAAAIGKYAGLSVQTLVGGMDFNKQMQALHGQ 166

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D    + + +  L+ +V+DEAD MLD+GF   ++ I+  +P+K    
Sbjct: 167 FVDILVATPGRLLDFCERREVYLDQLEILVIDEADRMLDMGFIPQVKRIVRLAPRKTHRQ 226

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT S  +  LA+++  + V V I  E      ++    +V+  ++   + N++  
Sbjct: 227 TLLFSATFSDDVLRLAESWMFEPVSVEIEPETVATDSVEQFIYMVSGDEKLPLLCNLISM 286

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              KN ++F + R       + L +  ++V  LSGE+ Q +R   L+  ++G  +  +AT
Sbjct: 287 PDVKNVMIFANRRDQCRTLYERLRKQGYKVGLLSGEIPQGKRVKTLEAFKEGSLQALVAT 346

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L   PE+ +HR GRTGRAG  G S+    ++   R   +  
Sbjct: 347 DVAGRGIHIDGVSHVVNYTLPEEPEDYVHRIGRTGRAGNTGQSISFACEDDAFRLPAIEE 406

Query: 362 EANVSVVWEPAPS 374
                +  E  P 
Sbjct: 407 LLGRKLKCELPPE 419


>gi|120564784|gb|ABM30181.1| VASA3n [Paragonimus westermani]
          Length = 606

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 187/387 (48%), Gaps = 19/387 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   ++I   +    Y   T VQ+  +      +D++  AQTGSGKT AF + +
Sbjct: 130 ISSFADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPI 189

Query: 59  ASTLLAENDRFS---------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + ++ E    S             P+AL +APTRELA Q+  +      ++ +   V  
Sbjct: 190 LNRMIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLY 249

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  +  ++  G +++V TPGRL D I    + + H + ++LDEAD MLD+GF   I
Sbjct: 250 GGADMRAQLIEVSKGCNLLVATPGRLTDAIERGRIGLDHCRFLILDEADRMLDMGFEPQI 309

Query: 170 EFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++          + LMFSAT    I  LAK++    + + +        +I      
Sbjct: 310 RRIVEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSISW 369

Query: 226 VALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V    + +A+V++L         +VF  T+         L    F V ++ G+ +Q +R 
Sbjct: 370 VEEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFHVASIHGDRTQDDRE 429

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL   R+GR  + +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++
Sbjct: 430 LALPCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIA 489

Query: 345 VFVI---PQNMQRRAERLFREANVSVV 368
                   +N+ R    L  E N +V 
Sbjct: 490 TSFFNDKNRNLARGLVELLEEVNQNVP 516


>gi|160380697|sp|Q0CMM5|DBP4_ASPTN RecName: Full=ATP-dependent RNA helicase dbp4
          Length = 804

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/462 (23%), Positives = 199/462 (43%), Gaps = 10/462 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K F ++P  +     LS   Y  LT +Q   ++  L+ +D+L +A+TGSGKT+AF + +
Sbjct: 45  FKAFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAKTGSGKTLAFLIPV 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 105 LENLY--RKQWAEHDGLGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGKSLKEEQ 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +L+ +VLDEAD ++D+GF+  ++ I+   PK
Sbjct: 163 ERLGKMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAIIGHLPK 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   V +     +   S +    V+  L  + + + 
Sbjct: 223 ERQTMLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVTPLPQKLDILW 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     IVF S+   V    +        +  +     Q++             +
Sbjct: 283 SFIRSNLKSKTIVFLSSGKQVRFVYEAFRHLQPGIPLMHLHGRQKQGGRLDITTKYSQAK 342

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P   Q
Sbjct: 343 HAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEQ 402

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +RL  ++  V  +   A   ++I+ +      +DP      Q      V  +  + D
Sbjct: 403 GMLKRLEQKKVPVEKINVKANKQQSIKNQLQNMCFKDPELKYLGQKAFISYVKSVYVQKD 462

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
            E      L +            P       D  ++   A +
Sbjct: 463 KEIFKLKDLDLEEFASSLGLPGAPRIKFIKGDDTKERKNAPR 504


>gi|90414227|ref|ZP_01222207.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90324674|gb|EAS41215.1| ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 437

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 104/365 (28%), Positives = 179/365 (49%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L  +G+ N T +Q   L   L  +D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LEPTVLQGLDAQGFHNCTPIQALALPVVLTGQDIAGQAQTGTGKTLAFLTATFNHLLLNP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  +   L A TG+   +  GG +  ++++    G 
Sbjct: 76  ASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--ML 183
            I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+    P  +    +
Sbjct: 136 DILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +      V +  + +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVVVEPDQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILEQFTQGEIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGNSISFACEEYAINLPAIETYI 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 EHPIP 380


>gi|323496504|ref|ZP_08101562.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
 gi|323318781|gb|EGA71734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           sinaloensis DSM 21326]
          Length = 444

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/399 (26%), Positives = 184/399 (46%), Gaps = 8/399 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPILHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A       + +GG + + + + L+    
Sbjct: 66  SKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S            +   L  ++  +  ++    
Sbjct: 186 SATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVIEEAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TRA   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YKQLIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  VI+ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 306 ASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAYL 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
              + +     ++   +    R    P F +  +   KK
Sbjct: 366 QQDLSFSELEGLKGKFKGLKPR---KPDFRNKGKATNKK 401


>gi|299470793|emb|CBN79839.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 572

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 16/386 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+ P    I  AL   GY   T  Q       L  +D++  A+TGSGKT+ F L  
Sbjct: 145 MSSFESTPFGGPIRGALKAAGYPAPTPTQAQSWPIALSGRDIISVARTGSGKTLGFLLPA 204

Query: 59  ASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              LL       P    P  + +APTRELA Q+  E        G+      GG   + +
Sbjct: 205 FHALLNRPGGCKPRMGGPYIVVLAPTRELACQINEEATKFGKAAGIRSTTVYGGSPKYPQ 264

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + +Q+G  +V+ TPGRL D +    +N++++  + LDEAD MLD+GF   I  I+D+ P
Sbjct: 265 IKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMP 324

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-----ENRQHSDIDYRAVLVALSDRD 232
            KR+ L F+AT    +  LA+++  + V + +        N+  +   +        D+ 
Sbjct: 325 AKRQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHIVDERDKGDKL 384

Query: 233 NAIVNILRYHGAK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++  L  +  K      I+F S + +  +  +   +  F V +L G+  Q ER+  + 
Sbjct: 385 WELLTKLHENPPKADHGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMD 444

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN-PENLLHRSGRTGRAGRKGMSVFV 347
             R G  R+ +ATDVAARG+D+ D+  VI+ +   +  EN +HR GRT R    G +   
Sbjct: 445 QYRSGEVRMLVATDVAARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTF 504

Query: 348 IPQNMQRRAERL---FREANVSVVWE 370
              +  + A +L    R AN  V  E
Sbjct: 505 FTSSDAKFANKLVGVLRGANQDVPAE 530


>gi|170681328|ref|YP_001743833.1| ATP-dependent RNA helicase DbpA [Escherichia coli SMS-3-5]
 gi|170519046|gb|ACB17224.1| ATP-independent RNA helicase DbpA [Escherichia coli SMS-3-5]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +                 +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TFSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|320353120|ref|YP_004194459.1| DEAD/DEAH box helicase domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121622|gb|ADW17168.1| DEAD/DEAH box helicase domain protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 428

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 6/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  + I  A+S  G+   T +Q+  +   L  +D+L  AQTG+GKT AF L     L+  
Sbjct: 7   HFNEHITHAISHCGFTAPTPIQQQAIPSVLERRDLLGLAQTGTGKTAAFILPTVQHLMR- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               + A    AL IAPTRELA Q+      +   T +      GGVS   +   L+ G 
Sbjct: 66  ----TQAHHVRALIIAPTRELAEQINDFTRAIIRNTRLKSIAVYGGVSKQAQITKLRGGV 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV  PGRL D +  K +++S +  ++LDEAD M D GF  DI  IL   P +R+ L+F
Sbjct: 122 DIVVACPGRLLDLLNDKAVDLSRVDTLILDEADHMFDKGFLPDIRRILRRLPAERQSLVF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LA++   D V V I       S       +     + + ++ +L+     
Sbjct: 182 SATMPDEIRHLAEDILTDPVTVQINPTRSVQSISHRLYAVE-QEQKTDLLLQLLKDEAMA 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+       + LA+  F+  +L G LSQ  R  AL   + G   + +ATD+AA
Sbjct: 241 TTLIFTRTKHKAKNLAQKLAQSGFKATSLQGNLSQNRRQQALDGFKTGAFTILVATDIAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+ ++    E  +HR+GRTGRA R G ++    +   R    + R  + 
Sbjct: 301 RGIDVNGISHVINYDMPDTAEAYIHRTGRTGRAARTGEALTFATREDSRMIRLIERSIDG 360

Query: 366 SVVWEPAPSVEAIRE 380
            +       + A+R 
Sbjct: 361 RMNHGDVAELPAVRS 375


>gi|296235289|ref|XP_002762845.1| PREDICTED: ATP-dependent RNA helicase DDX3X isoform 1 [Callithrix
           jacchus]
 gi|297709768|ref|XP_002831596.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Pongo
           abelii]
          Length = 660

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|283832995|ref|ZP_06352736.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
 gi|291071607|gb|EFE09716.1| ATP-independent RNA helicase DbpA [Citrobacter youngae ATCC 29220]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 200/390 (51%), Gaps = 11/390 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    E L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------AALFQMQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + +           I+ +    +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQQDPLTI-EIDTVDALPAIEQQFFETSSHGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +   + +VFC+T+         L       ++L G+L Q++R   L    +G AR
Sbjct: 234 KLLSQYQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             L     + + W PAP   +I   +A+ +
Sbjct: 354 NILSEMLQLKLNWLPAPGNGSILPLEAEMV 383



 Score = 54.2 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +       G      
Sbjct: 320 WDPEVHIHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLPAPGNGSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K K     ++  L    G++   IG I V P   +V V  +      +
Sbjct: 380 AEMVTLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQNVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1056

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/365 (27%), Positives = 177/365 (48%), Gaps = 8/365 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+   +++Q   +      +DV+  A+TGSGKT+AF L +   ++ +         
Sbjct: 474 IRSLGFEEPSAIQAQAIPAITAGRDVIGVAKTGSGKTIAFLLPMFRHIMDQRP-LRNGEG 532

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ + PTRELAVQ+ RE +       +      GG  +  +  +L+ GA IVV TPGR
Sbjct: 533 PVAVIMTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQIAELKRGAEIVVCTPGR 592

Query: 135 L---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           +    +   G+  N+     VVLDEAD M DLGF   +  IL++    R++++FSAT   
Sbjct: 593 MIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRPDRQVVLFSATFPR 652

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----LRYHGAKNA 247
           A+  LA+   K  + + +   +   ++++    + +   +   ++ +             
Sbjct: 653 AMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLELLGELYNTQPDVRT 712

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF     S       L +  +   ++ G   Q +R + +   + G   V IAT VAARG
Sbjct: 713 LVFVDRHESADALLSQLMKRGYSCNSIHGGKDQHDRDSTISDYKMGIFDVLIATSVAARG 772

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L+LV++ +  ++ E+ +HR GRTGRAG  G++V  +  +  R A  + +   +S 
Sbjct: 773 LDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFVTPDQSRYAVGIAKALKMSK 832

Query: 368 VWEPA 372
              P 
Sbjct: 833 QPVPL 837


>gi|326519741|dbj|BAK00243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 649

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/369 (28%), Positives = 174/369 (47%), Gaps = 7/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + + G+   + +Q       L+  D++  A+TGSGKT+ + L     +L +N
Sbjct: 168 FPSEILREVQQAGFSAPSPIQAQSWPIALKGSDIVAVAKTGSGKTLGYLLP--GFILVKN 225

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    P  L ++PTRELA Q+  E       + +      GG     + RDL+ GA 
Sbjct: 226 LRHNSRDGPTVLVLSPTRELATQIQDEAIKFGRSSRISSTCLYGGAPKGPQLRDLERGAD 285

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +    +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+
Sbjct: 286 IVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFT 345

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT    +  +A +       V +    E   +  I     +    ++   +  ILR    
Sbjct: 346 ATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQYVEVTTSMEKGRRLDQILRQQEP 405

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++   +   +           +   A+ G+ SQ ER + L   R GR  + +ATDVA
Sbjct: 406 GSKVIIFCSTKRMCDQLSRNLSRQYGASAIHGDKSQAERDSVLSEFRTGRCPILVATDVA 465

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFR 361
           ARG+D+ D+ +V++ +  +  E+ +HR GRTGRAG  G++         + A    ++  
Sbjct: 466 ARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGASGIAYTFFCDQDSKYASDLVKILE 525

Query: 362 EANVSVVWE 370
            AN +V  E
Sbjct: 526 GANQAVSPE 534


>gi|325296847|ref|NP_001191665.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
 gi|304441889|gb|ADM34180.1| ATP-dependent RNA helicase DDX5 [Aplysia californica]
          Length = 600

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 180/377 (47%), Gaps = 10/377 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N P  +   +    + + T++Q       L  ++++  AQTGSGKT+ F L    
Sbjct: 106 TFEEGNFPDYVMSQIRRNSWQSPTAIQSQAWPIALSGRNLVGIAQTGSGKTLGFILPAIV 165

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +         P+ L + PTRELA QV          + +  A   GG     + RD
Sbjct: 166 HVNHQ-PYLEHGDGPIVLVLVPTRELAQQVLEVSNEFGRASQLKTACVYGGAPKGPQLRD 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA I + TPGRL D +     N+     +VLDEAD MLD+GF   I  ILD     R
Sbjct: 225 LERGAEICIATPGRLIDFLEAGKTNLRRTTYLVLDEADRMLDMGFEPQIRKILDQIRPDR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIV 236
           + LM+SAT    +  LA+ +  D ++VNI +     +    + + V +      +   ++
Sbjct: 285 QTLMWSATWPKEVRRLAEEFLNDYIQVNIGALQLTANHNILQIIDVCMDHEKEEKLVKLL 344

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N +        ++F  T+       + +    + V+++ G+ SQQER  AL   R+GR  
Sbjct: 345 NEIMQEKENKTLIFVETKRKADDIARRMKRDGWPVLSIHGDKSQQERDWALNDFRNGRNP 404

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+D+ D++ VI+ +  +  E+ +HR GRTGR+   G +         ++A
Sbjct: 405 ILVATDVASRGLDVEDIKFVINFDYPNCSEDYVHRIGRTGRSTNTGTAYTFFTPGNAKQA 464

Query: 357 ERL---FREANVSVVWE 370
             L    REA   +  +
Sbjct: 465 SDLVNVLREAKQVISPK 481


>gi|311106059|ref|YP_003978912.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
 gi|310760748|gb|ADP16197.1| ATP-independent RNA helicase DbpA [Achromobacter xylosoxidans A8]
          Length = 462

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 130/407 (31%), Positives = 203/407 (49%), Gaps = 14/407 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++P    + + L   G+  +T +Q   L   L  +D++  A+TGSGKT AFGL + 
Sbjct: 4   TSFTSLPLLPALLDNLKSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             L            P AL + PTRELA QV +EL  L  +   V +    GG +   + 
Sbjct: 64  QKLDPTR------LTPQALLVCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQA 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G H+VVGTPGR+ DH+    L++S L  +VLDEAD M+D+GF DDI  I    P 
Sbjct: 118 ESLARGTHLVVGTPGRIQDHLERGSLDLSGLNTLVLDEADRMVDMGFYDDIVAIASHCPT 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT    I  L+  + ++   V         S I+     +   DR +A+  +
Sbjct: 178 KRQTLLFSATYPDNIRKLSARFLRNPAEV-KVEAQHDASRIEQIFYEIDDKDRLDAVTRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +   ++ + FC+T+       + L        AL+G+L Q+ER   L    +    V 
Sbjct: 237 LAHFRPESTLAFCNTKIRSHDLVERLQAEGISAQALNGDLEQRERDEILIQFANRSCAVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ +++ + E  +HR GR+GR  +KG+++ +      R A  
Sbjct: 297 VATDVAARGLDIQNLGAVINVDVTKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANL 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +     +VW    ++       A R L+ P+    IQG +K  + 
Sbjct: 357 IEQYQGAPLVWGDIKTLRP----KADRPLRAPMITLCIQGGKKDKLR 399



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
                R          +  G K K     L+  L    G+  + +G I +    ++V   
Sbjct: 374 RPKADRPLRAPMITLCIQGGKKDKLRPGDLLGALTGDGGLTFEQVGKINITEFNSYVALD 433

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYL 536
            +++      L  +    +  +++YL
Sbjct: 434 RQIAKQAFSRLSNSNIKGRRFRMRYL 459


>gi|219113561|ref|XP_002186364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583214|gb|ACI65834.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 370

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 184/367 (50%), Gaps = 8/367 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   G+   +++Q+  + P +R +DV+  +Q+G+GKT  F ++    LL EN
Sbjct: 3   LKPDLLKGIYAYGFEKPSAIQQRAIRPIIRGRDVIAQSQSGTGKTAVFSVSSLQ-LLQEN 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNGA 125
            R         L ++PTRELA Q  + ++ L         A   G           + G 
Sbjct: 62  SR-----ECQVLILSPTRELAEQTQKVVQALGDFMNVHCHACIGGKSLGQDLNALEKGGI 116

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+ GTPGR+ D IR   L+ +HLKA++LDEADEML+ GF++ I  I    P   ++++ 
Sbjct: 117 QIISGTPGRVFDLIRRNALSPNHLKAMILDEADEMLNRGFKEQIYDIYRFLPASTQVVLM 176

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+  ++  + + +  D +R+ +  +      I      +     + + + ++      
Sbjct: 177 SATLPASVLDMTRKFMNDPIRILVRRDELTLEGIRQFFINVEKEEWKFDTLCDLYDTLTI 236

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+T+  V      + +  F V A+ G++ Q  R   ++  R G +RV IATD+ 
Sbjct: 237 TQAVIFCNTKQKVDWLAGKMKDKNFTVSAMHGDMDQGARDAVMEEFRSGSSRVLIATDLW 296

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            RGID+  + LVI  +L +N E  +HR GR+GR GRKG+++  + +   R    + +  +
Sbjct: 297 GRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGIAINFVREEDTRLLRDIEQFYS 356

Query: 365 VSVVWEP 371
             +   P
Sbjct: 357 TQIEEMP 363


>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
 gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
          Length = 705

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E+  PQ + +    + +   T +Q    +  +  +D++  A+TGSGKT+A+ L   
Sbjct: 104 MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 163

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  R +    P+AL +APTRELA Q+ +  +    + G+      GG S + +  
Sbjct: 164 VHISNQ-PRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQES 222

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      
Sbjct: 223 DLRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPD 282

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAI 235
           R++LM+SAT    I  LA+ + +D +++NI S     N     I          +R   +
Sbjct: 283 RQVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKL 342

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+  V +   V+    ++   + G+ SQ++R   L   R    
Sbjct: 343 LEQISSQNDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTN 402

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S          +
Sbjct: 403 GILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANSSK 462

Query: 356 AERL---FREANVSVVWE 370
           A  L    ++AN  +  E
Sbjct: 463 APDLITVLQDANQYINPE 480


>gi|50427631|ref|XP_462428.1| DEHA2G20372p [Debaryomyces hansenii CBS767]
 gi|74600402|sp|Q6BH93|HAS1_DEBHA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49658098|emb|CAG90938.1| DEHA2G20372p [Debaryomyces hansenii]
          Length = 568

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/418 (27%), Positives = 201/418 (48%), Gaps = 14/418 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + +   +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF +     
Sbjct: 106 FEEAGLSEPTLKAIKDMGFSKMTQVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 165

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + RF P +    + ++PTRELA+Q+      L A       + IGG +  +E   L
Sbjct: 166 LY--SLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRRQEAEKL 223

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL DH++        ++KA+V+DEAD +L++GF ++++ I+   P + 
Sbjct: 224 MKGVNLLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEEMKQIIKILPNED 283

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V   SE    + ++   V+     R   + 
Sbjct: 284 RQSMLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQGYVVCESDKRFLLLF 343

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V  F ++L      V+ L G+  QQ+R+N      +    
Sbjct: 344 SFLKRNVKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQG 403

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQR 354
           + I TDVAARG+D+P ++ +I  +   +P + +HR GRT R  AG KG S+  +  +   
Sbjct: 404 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAG-KGKSLMFLTPSELG 462

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R  + ANV +     P+ + A  +    ++++   +L     D  +      A H
Sbjct: 463 FL-RYLKAANVPLNEYEFPTNKIANVQSQLTKLIKGNYWLHQSAKDGYRSYLQAYASH 519


>gi|159478699|ref|XP_001697438.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158274317|gb|EDP00100.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 515

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/365 (32%), Positives = 177/365 (48%), Gaps = 12/365 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I   +    Y   T +Q   L   L  +D+L  A+TGSGKT +F + +    L +
Sbjct: 119 NLHPNIVADIQHHKYETPTPIQAQGLPIALSGRDILGCAETGSGKTASFSIPMIQHCLNQ 178

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                    P+AL +APTRELA Q+ RE++     +G     ++ +GGV +H +R DL+N
Sbjct: 179 QP-LRAGDGPMALVLAPTRELAQQIEREVKAFSRSSGRSVRTSIVVGGVPMHEQRHDLRN 237

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGR  DH++    N+  +  VVLDEAD MLD+GF   I+ ++++ P K + L
Sbjct: 238 GVEVVVATPGRFIDHLQQGNTNLGRISYVVLDEADRMLDMGFEPQIKEVMNNLPPKHQTL 297

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR---------DNA 234
           +FSAT+   I  LA+ Y    V V I + +   +++  R        +            
Sbjct: 298 LFSATMPKEIEELARAYLNKPVTVKIGAVSTPTANVSQRLEHAPEPQKLDILVALISAEV 357

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                        IVF   +         L E      AL G L+Q ER  AL+    G 
Sbjct: 358 AAEAAGGPPMPLTIVFVERKTRCDEVAAALREDGINANALHGGLNQNEREAALRDFAKGD 417

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +V +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG KG +  +       
Sbjct: 418 IKVLVATDVASRGLDIKGIGHVINMDLPKTFEDYVHRIGRTGRAGTKGRATSLWNDRDSY 477

Query: 355 RAERL 359
              ++
Sbjct: 478 LVAQI 482


>gi|45361237|ref|NP_989196.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
 gi|38649000|gb|AAH63374.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Xenopus
           (Silurana) tropicalis]
          Length = 699

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 198/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++   ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 221 IESFQDVTMGEIIMGNIQLSRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPI 280

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           L EN R+      PL+L +APTRELAVQ+  E      ++ V   
Sbjct: 281 LSQIYADGPGDAMKHLKENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPC 340

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +     +VLDEAD MLD+GF 
Sbjct: 341 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCNYLVLDEADRMLDMGFE 400

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 401 PQIRRIVEQDTMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQK 460

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 461 VVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 520

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 521 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 580

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 581 GLATSFFNEKNINITKDLLDLLVEAKQEVP 610


>gi|257898623|ref|ZP_05678276.1| helicase [Enterococcus faecium Com15]
 gi|257836535|gb|EEV61609.1| helicase [Enterococcus faecium Com15]
          Length = 449

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + A+ +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINADKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QLNRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|91228572|ref|ZP_01262491.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269964706|ref|ZP_06178944.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|91187851|gb|EAS74164.1| ATP-dependent RNA helicase DbpA [Vibrio alginolyticus 12G01]
 gi|269830605|gb|EEZ84826.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 459

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   +   L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +++S L  +VLDEAD MLD+GF+D ++ I+D++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRIDLSELNTLVLDEADRMLDMGFQDALDAIIDAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   Y   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQYFYKVEGSEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F V+ + G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQSVADELHHKGFSVIDIHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + VV    P+      +  Q+  Q  +   +I G +K+ V 
Sbjct: 358 IEEYLEMDVVPATLPA------KSNQQPYQAKMVTINIDGGKKQKVR 398



 Score = 54.2 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
               ++  G KQK     ++  L   +GI    +G I + P   +V V         +T+
Sbjct: 384 MVTINIDGGKKQKVRPGDILGCLTGKNGIPGSQVGKIHLFPVRAYVAVEKSVAKKALQTI 443

Query: 526 KLDK 529
              K
Sbjct: 444 SNGK 447


>gi|69248136|ref|ZP_00604639.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257878212|ref|ZP_05657865.1| helicase [Enterococcus faecium 1,230,933]
 gi|257881006|ref|ZP_05660659.1| helicase [Enterococcus faecium 1,231,502]
 gi|257884664|ref|ZP_05664317.1| helicase [Enterococcus faecium 1,231,501]
 gi|257889589|ref|ZP_05669242.1| helicase [Enterococcus faecium 1,231,410]
 gi|257892472|ref|ZP_05672125.1| helicase [Enterococcus faecium 1,231,408]
 gi|258616279|ref|ZP_05714049.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium DO]
 gi|260559258|ref|ZP_05831444.1| helicase [Enterococcus faecium C68]
 gi|293553475|ref|ZP_06674103.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|293559336|ref|ZP_06675878.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|293569834|ref|ZP_06680921.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|294617902|ref|ZP_06697511.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|294622258|ref|ZP_06701312.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|314939754|ref|ZP_07846976.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|314942115|ref|ZP_07848971.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|314948290|ref|ZP_07851682.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
 gi|314952378|ref|ZP_07855385.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|314992003|ref|ZP_07857456.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|314995699|ref|ZP_07860789.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|68194541|gb|EAN09035.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Enterococcus faecium DO]
 gi|257812440|gb|EEV41198.1| helicase [Enterococcus faecium 1,230,933]
 gi|257816664|gb|EEV43992.1| helicase [Enterococcus faecium 1,231,502]
 gi|257820502|gb|EEV47650.1| helicase [Enterococcus faecium 1,231,501]
 gi|257825949|gb|EEV52575.1| helicase [Enterococcus faecium 1,231,410]
 gi|257828851|gb|EEV55458.1| helicase [Enterococcus faecium 1,231,408]
 gi|260075015|gb|EEW63331.1| helicase [Enterococcus faecium C68]
 gi|291587582|gb|EFF19459.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1071]
 gi|291595847|gb|EFF27131.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1679]
 gi|291598229|gb|EFF29324.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium U0317]
 gi|291602352|gb|EFF32576.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1039]
 gi|291606700|gb|EFF36092.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1162]
 gi|313590090|gb|EFR68935.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
 gi|313593438|gb|EFR72283.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
 gi|313595495|gb|EFR74340.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
 gi|313599125|gb|EFR77970.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
 gi|313640983|gb|EFS05563.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
 gi|313645271|gb|EFS09851.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
          Length = 449

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/390 (27%), Positives = 187/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEALTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + AE +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINAEKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QLNRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|322386910|ref|ZP_08060534.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
 gi|321269192|gb|EFX52128.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           cristatus ATCC 51100]
          Length = 447

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N    I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFNFKDYIQEALKDLNFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QELDEE------ADSVQAVITAPSRELATQIYQAARQLASFSEQEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I      V+DEAD  LD+GF + ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLETVDRIAARL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      ID   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVIADTIDNWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G++  +ER   +  +++    
Sbjct: 235 EISQILQPYLAMIFVNTKTRADELQVYLTAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             +++++  F D+   D +   +    K D E I
Sbjct: 355 RELEK---LGIKFTP-------------KMIKNGEFQDTYDRDRRANREKTKEKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|259906863|ref|YP_002647219.1| ATP-dependent RNA helicase RhlB [Erwinia pyrifoliae Ep1/96]
 gi|224962485|emb|CAX53940.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283476655|emb|CAY72483.1| putative ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
 gi|310766111|gb|ADP11061.1| ATP-dependent RNA helicase RhlB [Erwinia sp. Ejp617]
          Length = 430

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 183/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   +G+ + +  GG    ++ + L++G 
Sbjct: 76  APEGRQVNQPRALILAPTRELAVQIHADAEPLAQISGLKIGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            +++ T GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DVLIATTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPAANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  + +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSFRVRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRTIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDDFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEEYALNLPAIEEYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 454

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 19  LDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 76

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A       + +GG + + + + L+    
Sbjct: 77  SKAFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGGENFNDQVKALRKYPK 136

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 137 FIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 196

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S            +   L  ++  +  +L+   
Sbjct: 197 SATLDHAEVNDIAFEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLQEAE 256

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TRA   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDV
Sbjct: 257 YKQIIIFTATRADTDRLTEKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDV 316

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 317 ASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 376

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 377 QQDLSFSELEGLK 389


>gi|20373098|dbj|BAB91216.1| RNA helicase [Mesocricetus auratus]
          Length = 662

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
           curvata DSM 43183]
 gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
           43183]
          Length = 565

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 10/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     I +AL   G V+   +QE  L   LR  D++  A+TG+GKT+AFG+ L
Sbjct: 25  LTTFRELGVCSEIADALESEGIVDAFPIQEMALPIGLRGYDIIGQARTGTGKTLAFGIPL 84

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +           AP  L +APTRELA QV  +L     K G  V    GG +   + 
Sbjct: 85  LQRIEHGG------KAPRGLVLAPTRELASQVTDDLLVAGGKLGTRVVAVYGGRAYEPQI 138

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  +VVGTPGRL D  R   L++S ++ +VLDEAD MLDLGF  DIE I++  P 
Sbjct: 139 QALRDGVDVVVGTPGRLLDLARQGHLDLSQIQMLVLDEADRMLDLGFLPDIERIIELVPA 198

Query: 179 KRRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT+   I   +     +   VR  + +E+     +          D+   + 
Sbjct: 199 ERQTMLFSATMPGEIVALSRRYLNRPTNVRAEVHTESEATPQVTQHVFQTHPMDKPEVLA 258

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ +G    +VFC T+ +  R    L    F   A+ G+L Q +R  AL+  R G+  
Sbjct: 259 RLLQANGRGLTMVFCQTKRACDRIAADLTRRGFAAAAVHGDLGQGQRERALRAFRSGKVD 318

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+ D+  VI+ E   + E  +HR GRTGRAGR+G +V ++  +   R 
Sbjct: 319 VLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGREGTAVTLVDWSDLPRW 378

Query: 357 ERLFREANVSVVWEP 371
           + +     +     P
Sbjct: 379 KLINNALQLPFGEPP 393


>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 395

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 184/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++++E GY   T++Q   +   L+ +D++ +AQTG+GKT  F L +   L+   
Sbjct: 8   LNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPILDRLM--Q 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV   ++     T +      GGV    +++ L +G  
Sbjct: 66  GQTQRKKRIRALILVPTRELAIQVADNVKQYAQYTELTSLAMYGGVDEQAQKQQLIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + ++   ++ VVLDEAD MLD+GF + I  I+   P + + L+FS
Sbjct: 126 VLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRMLDMGFIEAINKIIQRLPTEAQFLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    +A  ++IA+     S+I    + V    +   + +++  +    
Sbjct: 186 ATLSNKVRELAKTAVGEAHEISIAAHQASKSNITQWLITVDKDQKSALLSHLIHEYQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+ +  IAT VAAR
Sbjct: 246 ALIFIETKHGAAKLAAQLEKRGIAAEAFHSGRSQAVREQLLADFKAGKIKYLIATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ +L  V++ +L    +  +HR GRTGRA  +G ++ ++ ++  +    +       
Sbjct: 306 GIDIDELPRVVNYDLPFPADEYVHRIGRTGRAEAQGEAISLVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 366 IERREIAGFE 375


>gi|158796|gb|AAA29013.1| Mab4611 antigen (vasa) [Drosophila melanogaster]
          Length = 648

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 177/369 (47%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ GY   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 238 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 297

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P    ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 298 PHELELGR-PQVCIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 356

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-- 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+     +      
Sbjct: 357 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 416

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K+ V V I       SD+      V    + +  +  +    
Sbjct: 417 MFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSK-LIEILSEQ 475

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 476 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 535

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERL 359
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTGR G  G +         R       ++
Sbjct: 536 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAIAADLVKI 595

Query: 360 FREANVSVV 368
              +  +V 
Sbjct: 596 LEGSGQTVP 604


>gi|309358205|emb|CAP34588.2| hypothetical protein CBG_16678 [Caenorhabditis briggsae AF16]
          Length = 1000

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/397 (29%), Positives = 203/397 (51%), Gaps = 10/397 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +   +   L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +
Sbjct: 334 IKTFAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPM 393

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L +         P+A+ +APTRELA+Q  +E        G+ VA   GGV +  + 
Sbjct: 394 FRHIL-DQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQI 452

Query: 119 RDLQNGAHIVVGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            DL+ GA IVV TPGR+        GK  N+  +  +VLDEAD M D GF   I  ++++
Sbjct: 453 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 512

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               ++ ++FSAT    +  LA+      V + +  ++   SD+   AV+     +   +
Sbjct: 513 IRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKL 572

Query: 236 VNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDG 293
           + +L  Y+    +IVF   +         L +  +  VA   G + Q +R +++   + G
Sbjct: 573 LELLGMYYEQGCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTG 632

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
             +V +AT VAARG+D+ +L LV++ +  ++ E+ +HR GRTGRAGRKG +   + P++ 
Sbjct: 633 VIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQ 692

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           ++ A  + R    + V  PA  ++A+ ER  + +  +
Sbjct: 693 EKMAGEICRAFETAGVKPPA-DLKAMFERFKKEMEAE 728


>gi|218689333|ref|YP_002397545.1| ATP-dependent RNA helicase DbpA [Escherichia coli ED1a]
 gi|218426897|emb|CAR07752.2| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           ED1a]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +       +      AL + PTRELA QV  EL  L    +   +    GG     
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEINSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLEAE 381



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|114048006|ref|YP_738556.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889448|gb|ABI43499.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 449

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 184/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +  +     A+            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ +
Sbjct: 239 HLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++      +        +EA
Sbjct: 359 KKVQLFLRKTFEISVIKGLEA 379


>gi|313235130|emb|CBY25002.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 178/372 (47%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +  +I E +    Y   T VQ+  +      +D++  AQTGSGKT AF + + S +   
Sbjct: 203 ELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLSNIFHN 262

Query: 66  NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +     S  + PLAL ++PTREL  Q+ +E      ++ V   V  GG  V  + RDL
Sbjct: 263 PGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDL 322

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G H++V TPGRL D +    + +   + + LDEAD MLD+GF   I  I++       
Sbjct: 323 SRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPSD 382

Query: 182 ML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               MFSAT    I  LA ++  + + + +       ++I  R   V  +++   +  +L
Sbjct: 383 RQTLMFSATFPKQIQALASDFLDNYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELL 442

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+         L E  +Q   + G+ +QQER  A+ + + G+  + +
Sbjct: 443 ENGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILV 502

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RA 356
           AT VAARG+D+P++  VI+ +L S  +  +HR GRTGRAG  G +     +   +     
Sbjct: 503 ATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEKNAKISDDL 562

Query: 357 ERLFREANVSVV 368
            +L  EA   V 
Sbjct: 563 LQLLTEAKQEVP 574


>gi|307309898|ref|ZP_07589548.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|306909616|gb|EFN40110.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|315060597|gb|ADT74924.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           W]
 gi|323378840|gb|ADX51108.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L     ++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIVLDGVDIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|290989782|ref|XP_002677516.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284091124|gb|EFC44772.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 535

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 193/386 (50%), Gaps = 19/386 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALA 59
            FE  ++ +++   + + GY   T +Q+  +   +  ++D++  AQTGSGKT AF L + 
Sbjct: 106 TFEEADLHELLMTNVKKSGYTKPTPIQKHSMPAIVTSKRDMMACAQTGSGKTAAFLLPII 165

Query: 60  STLLA-----ENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + LL      +  RF+P    P A+ +APTREL  Q+  E      +T +   V  GG S
Sbjct: 166 NALLKSGIHKDKRRFAPNKGNPKAVILAPTRELCQQIYDECRKFIFQTYLKTVVVYGGAS 225

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + + L+ G  I+VGTPGR+ D I+ + L++S ++ +VLDEAD MLD+GF   I  I+
Sbjct: 226 SGYQMKQLERGVDILVGTPGRMNDFIQREKLDMSGVQYLVLDEADRMLDMGFEPQIRSIV 285

Query: 174 DSSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + S    +       +SAT       LA ++  D + V +        +I      V   
Sbjct: 286 EGSGMPPKGDRLTLLYSATFPKETQKLALDFLHDELFVQVGIIGGTTDNITQSFYQVDRR 345

Query: 230 DRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            + + +V +L     +    +VF   +++  R  ++L    F+   + G+  Q+ R  +L
Sbjct: 346 GKQDKLVEVLTEKKEEREKTLVFVQQKSTCDRIYELLTPLGFKCSVIHGDKDQRSRERSL 405

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  +DG   + +ATDVAARG+D+  +  VI+ +L    ++ +HR GRTGR G  G++   
Sbjct: 406 RQFKDGYTNILVATDVAARGLDIEKVAHVINYDLPKEIDSYIHRIGRTGRVGNLGIATAF 465

Query: 348 IPQNMQ----RRAERLFREANVSVVW 369
              +      R   ++ ++AN  +  
Sbjct: 466 FDPSEDGKLCRELVKILKDANQEIPE 491


>gi|262392485|ref|YP_003284339.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
 gi|262336079|gb|ACY49874.1| ATP-dependent RNA helicase DbpA [Vibrio sp. Ex25]
          Length = 459

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   +   L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + 
Sbjct: 4   QTFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 64  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D++PK
Sbjct: 118 GSLEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   +   +     RD A+ N+
Sbjct: 178 QRQTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F V+ + G+L Q+ER  AL    +    + 
Sbjct: 238 LLTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 298 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + VV    P+      +  Q+  Q  +   +I G +K+ V 
Sbjct: 358 IEEYLEMDVVPATLPA------KSNQQPYQAKMVTINIDGGKKQKVR 398



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 23/198 (11%)

Query: 340 RKGMSVFVIPQNMQRRAER--LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           RKG SV  I  ++++R     L + AN SV    A  V A R  D   +     F  S  
Sbjct: 265 RKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAA-RGLDVDNLDAVFNFELSRD 323

Query: 398 GDEKKMVDVLLAKHDPEKIAAGF------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
            +          +   + +A  F      LR+ R       ++ P +L +  ++    ++
Sbjct: 324 PEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATLPAKSNQQPYQAK 383

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                             ++  G KQK     ++  L   +GI    +G I + P   +V
Sbjct: 384 --------------MVTINIDGGKKQKVRPGDILGCLTGKNGIPGSQVGKIHLFPMRAYV 429

Query: 512 EVSADGVDLLRRTVKLDK 529
            V         +T+   K
Sbjct: 430 AVEKSAAKKALQTISNGK 447


>gi|262168988|ref|ZP_06036682.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022687|gb|EEY41394.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 448

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 66  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 366 QQEIQFEVLAGLE 378


>gi|209918588|ref|YP_002292672.1| ATP-dependent RNA helicase DbpA [Escherichia coli SE11]
 gi|218553903|ref|YP_002386816.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI1]
 gi|293433706|ref|ZP_06662134.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|209911847|dbj|BAG76921.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|218360671|emb|CAQ98232.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI1]
 gi|291324525|gb|EFE63947.1| ATP-independent RNA helicase DbpA [Escherichia coli B088]
 gi|320199384|gb|EFW73975.1| ATP-dependent RNA helicase DbpA [Escherichia coli EC4100B]
 gi|323947687|gb|EGB43690.1| DEAD/DEAH box helicase [Escherichia coli H120]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|191165035|ref|ZP_03026879.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|309797091|ref|ZP_07691489.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|190904807|gb|EDV64512.1| ATP-independent RNA helicase DbpA [Escherichia coli B7A]
 gi|308119261|gb|EFO56523.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGVDIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|254230057|ref|ZP_04923456.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
 gi|151937445|gb|EDN56304.1| Superfamily II DNA and RNA helicases [Vibrio sp. Ex25]
          Length = 471

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/407 (33%), Positives = 218/407 (53%), Gaps = 15/407 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+   +   +   L    Y ++T +Q   L   L+ +DV+   +TGSGKT AFGL + 
Sbjct: 16  QTFDQVGLNPALLATLDSLNYTHMTPIQALSLPAILKHRDVIGQGKTGSGKTAAFGLGVL 75

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
           S L  +  R        +L + PTRELA QV +E+  L      + V    GG+ +  + 
Sbjct: 76  SNLNVKRFRV------QSLVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQI 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+    +N+S L  +VLDEAD MLD+GF+D ++ I+D++PK
Sbjct: 130 GSLEHGAHILVGTPGRILDHLEKGRINLSELNTLVLDEADRMLDMGFQDALDAIIDAAPK 189

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  +A+   +    + + S +   S   +   +     RD A+ N+
Sbjct: 190 QRQTLLFSATFPEKIEQIAQRIMQTPEVIKVESTHDTSSIAQHFYKVEGSEARDEALANL 249

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L  H  ++A+VFC+T+  V      L    F V+ + G+L Q+ER  AL    +    + 
Sbjct: 250 LLTHQPESAVVFCNTKKEVQSVADELHRKGFSVIDIHGDLEQRERDQALVQFANKSVSIL 309

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L+ V + ELS +PE  +HR GRTGRAG KG++     +    R  R
Sbjct: 310 VATDVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVAR 369

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + VV    P+      +  Q+  Q  +   +I G +K+ V 
Sbjct: 370 IEEYLEMDVVPATLPA------KSNQQPYQAKMVTINIDGGKKQKVR 410



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 23/198 (11%)

Query: 340 RKGMSVFVIPQNMQRRAER--LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           RKG SV  I  ++++R     L + AN SV    A  V A R  D   +     F  S  
Sbjct: 277 RKGFSVIDIHGDLEQRERDQALVQFANKSVSILVATDVAA-RGLDVDNLDAVFNFELSRD 335

Query: 398 GDEKKMVDVLLAKHDPEKIAAGF------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
            +          +   + +A  F      LR+ R       ++ P +L +  ++    ++
Sbjct: 336 PEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEEYLEMDVVPATLPAKSNQQPYQAK 395

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                             ++  G KQK     ++  L   +GI    +G I + P   +V
Sbjct: 396 --------------MVTINIDGGKKQKVRPGDILGCLTGKNGIPGSQVGKIHLFPMRAYV 441

Query: 512 EVSADGVDLLRRTVKLDK 529
            V         +T+   K
Sbjct: 442 AVEKSAAKKALQTISNGK 459


>gi|147671861|ref|YP_001214917.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314244|gb|ABQ18784.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227014692|gb|ACP10901.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNKNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|328752857|gb|EGF66473.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
          Length = 564

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFANLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|326429718|gb|EGD75288.1| DEAD/H box polypeptide 3 [Salpingoeca sp. ATCC 50818]
          Length = 710

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 183/383 (47%), Gaps = 17/383 (4%)

Query: 3   IFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            F+  +  V+   L   GY   T VQ+  +      +D++  AQTGSGKT AF + + S 
Sbjct: 220 FFDCGLADVVTNNLRLAGYTKPTPVQKYSIPIVTARRDLMACAQTGSGKTAAFLVPIISR 279

Query: 62  LLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           +L       P +A        P+ L +APTRELA Q+  E      +  +      GG  
Sbjct: 280 VLETGPVEVPETARRMEGKQFPVCLILAPTRELASQIFAEARKFAYRAKIRACCVYGGTD 339

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + RDLQ G  ++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I  I+
Sbjct: 340 FRSQFRDLQRGCQVLVATPGRLVDLLERGRIGMDAIRFLVLDEADRMLDMGFEPQIRRIV 399

Query: 174 DSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +        +    MFSAT    I  LA+++  D V +++        +I  +   V   
Sbjct: 400 EQDTMPPPGVRQTLMFSATFPKDIQVLARDFLHDCVSISVGRIGSTTENIFQKVYWVQEH 459

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++   +++++     K   +VF  T+         L    F   ++ G+ +Q++R  AL 
Sbjct: 460 EKRQTLLDLISAASEKELVLVFVETKRGADALEDFLIHQQFPASSIHGDRTQEQRERALA 519

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             RDG   + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G KG ++   
Sbjct: 520 SFRDGYTPILVATAVAARGLDIPNVKRVINFDLPSDIDEYVHRIGRTGRVGHKGQAISFF 579

Query: 349 PQ---NMQRRAERLFREANVSVV 368
                N+ R      RE    V 
Sbjct: 580 NDKNANVARDLLDTLRECKQEVP 602


>gi|304409413|ref|ZP_07391033.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303771|ref|ZP_07583524.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304351931|gb|EFM16329.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306912669|gb|EFN43092.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 411

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 198/382 (51%), Gaps = 3/382 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA 
Sbjct: 7   SLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLAL 66

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +     +      AL + PTRELAVQV +        T + V +  GGVS+  +      
Sbjct: 67  SPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++ TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L
Sbjct: 127 GIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI +L+K   +D   + +A  N   ++I+     V    +   + +++R   
Sbjct: 187 LFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSKN 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDV
Sbjct: 247 WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    
Sbjct: 307 AARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEVVL 366

Query: 364 NVSVVWEPAPSVE-AIRERDAQ 384
           +  +  +  P  E    + D +
Sbjct: 367 DKRLPQQWLPGFEPDFNKMDTE 388


>gi|254442945|ref|ZP_05056421.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257253|gb|EDY81561.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 436

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 192/367 (52%), Gaps = 5/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  +L   GY   T +Q A +   L+  D+L +AQTGSGKT AF L +   L   
Sbjct: 7   SLSDFLLRSLETLGYEEATPIQAAAIPVVLKGSDLLAAAQTGSGKTAAFSLPIIERLAGM 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR--ERRDLQN 123
            ++ +    P  L + PTRELAVQVG  +E           V +    V    + +    
Sbjct: 67  EEQKAK---PRFLVLVPTRELAVQVGAAIERYAEGAPRKARVLVAFGGVGYDAQMKAAYA 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +VV TPGRL D    + + +  ++ +VLDEAD +L LGF +++  IL+  P+ R+ L
Sbjct: 124 GVEVVVATPGRLIDLAERRSVVLDEVEMLVLDEADRLLALGFAEELNTILEMLPEGRQNL 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    + +LA    KD V++ + + +R    I  RA+ V  + R   + ++L   G
Sbjct: 184 LFSATFPQNVVSLANALLKDPVKIELEAASRPVESIAQRAIEVDGNSRTGLLRHLLETEG 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF  ++      T  L +H  + VAL G +SQ +R+ +L+  +  + RV +ATDV
Sbjct: 244 WERVLVFVGSKRRAENVTVKLQKHGIKAVALHGNMSQDKRARSLERFKQSKVRVLMATDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L  V++ +L  +  + +HR GRTGRAG  G++V  I  +       + ++ 
Sbjct: 304 AARGIDIAGLPCVVNYDLPRSAADYVHRIGRTGRAGESGLAVNFITDDKDAHFRLIEKKN 363

Query: 364 NVSVVWE 370
            + +  E
Sbjct: 364 GLRLERE 370


>gi|94556865|gb|AAY89069.2| vasa-like protein [Litopenaeus vannamei]
          Length = 703

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/378 (28%), Positives = 181/378 (47%), Gaps = 15/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 267 NLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMACAQTGSGKTAAFLLPMLHYILDN 326

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   + F   + P  L I PTRELA+Q+ RE       +     V  GG +   + + + 
Sbjct: 327 NCPSNAFEEPAQPTGLVICPTRELAIQIMREARKFSHSSVAKCCVAYGGAAGFHQLKTIH 386

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G HI+V TPGRL D +    +  S LK +VLDEAD MLD+GF   I+ +++        
Sbjct: 387 SGCHILVATPGRLLDFLEKGKIVFSSLKYLVLDEADRMLDMGFLSSIKTVINHKTMTPTA 446

Query: 183 L----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                MFSAT    I  LA  +  + + V + +    ++D+    + V   ++   +V +
Sbjct: 447 ERITLMFSATFPHEIQELASAFLNNYLFVVVGTVGAANTDVKQEVLCVPKFEKKAKLVEM 506

Query: 239 LRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 507 CEEILISADDEKILVFVEQKRVADFVGTYLCEKKFRATTMHGDRYQAQREQALSEFRTGV 566

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + +AT V ARG+D+  + +V++ +L  + +  +HR GRTGR G +G+S+         
Sbjct: 567 HNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSISFYDDETDA 626

Query: 352 -MQRRAERLFREANVSVV 368
            + +   ++  EAN ++ 
Sbjct: 627 CLTKDLVKVLSEANQTIP 644


>gi|300926734|ref|ZP_07142509.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301326919|ref|ZP_07220211.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|300417310|gb|EFK00621.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300846390|gb|EFK74150.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL  H++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|302686080|ref|XP_003032720.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
 gi|300106414|gb|EFI97817.1| hypothetical protein SCHCODRAFT_67353 [Schizophyllum commune H4-8]
          Length = 652

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/394 (30%), Positives = 189/394 (47%), Gaps = 28/394 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +  V+ E ++   Y   T VQ+  +      +D++  AQTGSGKT  F   + S 
Sbjct: 165 FTNPPLDPVLLENIAMAHYTTPTPVQKYSIPIVANNRDLMACAQTGSGKTGGFLFPILSA 224

Query: 62  LLAENDRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
             A     +P             P AL +APTREL  Q+  E      ++ V   V  GG
Sbjct: 225 SFAAGPAPTPDQGASYGRQRKAYPTALVLAPTRELVSQIHEEARKFAYRSWVRPCVVYGG 284

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             + ++ R L+ G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF   I  
Sbjct: 285 ADIGQQLRTLERGCDLLSATPGRLVDLIERGRISLANIKYLVLDEADRMLDMGFEPQIRR 344

Query: 172 ILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           I+              MFSAT    I  LAK++ KD + +++        +I  +   V 
Sbjct: 345 IVQGEDMPGVHERQTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQKIEFVE 404

Query: 228 LSDRDNAIVNILRYHGAKNA---------IVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             D+ + +++IL  + A  A         +VF  T+         L  H     ++ G+ 
Sbjct: 405 DPDKRSVLLDILSANQAPAANGGNGMGLTLVFVETKRMADGLCDFLLSHRMPATSIHGDR 464

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL   R GR  + +AT VAARG+D+P++  V++ +L  + ++ +HR GRTGRA
Sbjct: 465 TQREREMALNTFRSGRTPILVATAVAARGLDIPNVTHVVNYDLPGDIDDYVHRIGRTGRA 524

Query: 339 GRKGMSVFVI---PQNMQRRAERLFREANVSVVW 369
           G  G+S        +N+ R    L REAN  V  
Sbjct: 525 GNTGVSTAFFNRSNRNIVRELVELLREANQEVPQ 558


>gi|290996658|ref|XP_002680899.1| predicted protein [Naegleria gruberi]
 gi|284094521|gb|EFC48155.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/410 (25%), Positives = 190/410 (46%), Gaps = 19/410 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I     E  +   T++Q+      +   D++  A+TGSGKT+AF L     +LA+
Sbjct: 35  NFPHFIQNQFKEMNFKEPTAIQKQAWPIVMSGNDMIGLAETGSGKTLAFLLPGLMHVLAQ 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGGVSVHRER 118
            +       P+ + + PTRELA+Q+    E              + +A   GG     + 
Sbjct: 95  KE-LKKGDGPIMVILTPTRELAIQIHGACENFCNAFVPDSKDRALKIACLYGGEVRKTQI 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++ ++   +++ TPGRL D ++    N+     +VLDEAD MLD+GF   I  I      
Sbjct: 154 KECRSKPQVIIATPGRLLDFLQAGITNMKRCSYLVLDEADRMLDMGFNPQISQITSQVTP 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L FSAT + ++ ++A +Y   A    I +     +  ++R     L  +++  +  
Sbjct: 214 DRQTLFFSATWNRSVQSMAMSYVSKAEPHFIVNIGSIETSANHRVKQSFLFIQESDKIAR 273

Query: 239 --------LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                   ++       +VFC T+      T+ L E  +  +++ GE  Q+ER   L+  
Sbjct: 274 LTDLLDKLIKNPEDCRTLVFCKTKKRTDVVTERLREAGWPSLSIHGERKQEEREWVLEEF 333

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  + +ATDVAARG+D+ +++ VI+ ++    ++ +HR GRTGRAG++G SV     
Sbjct: 334 RSGKTPILVATDVAARGLDVENVKYVINYDMPHEIDSYIHRIGRTGRAGKEGNSVSFFTP 393

Query: 351 NMQRR---AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
              +      ++  EA   V  +     +   +      +++    D I+
Sbjct: 394 EDVQLCTPLIKVLEEAEQDVPDKLVKLRDLSTKSHGDLSIKEQRQKDKIE 443


>gi|218694919|ref|YP_002402586.1| ATP-dependent RNA helicase DbpA [Escherichia coli 55989]
 gi|218351651|emb|CAU97366.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           55989]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL  H++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLAHLQKGTISLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGVDIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|197287125|ref|YP_002152997.1| ATP-dependent RNA helicase RhlB [Proteus mirabilis HI4320]
 gi|227357184|ref|ZP_03841553.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
 gi|226739541|sp|B4F1V3|RHLB_PROMH RecName: Full=ATP-dependent RNA helicase rhlB
 gi|194684612|emb|CAR46501.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
 gi|227162716|gb|EEI47683.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
          Length = 432

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/355 (31%), Positives = 182/355 (51%), Gaps = 5/355 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL ++G+ N T +Q   L   ++  D+   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALEKKGFSNCTQIQALTLPITVKGHDIAGQAQTGTGKTLAFLTSTF 68

Query: 60  STLLAENDR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL    +     + P AL +APTRELAVQ+  + + L   TGV + +  GG     + 
Sbjct: 69  HYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDAQPLAQSTGVKMGLAYGGDGYDEQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L NG  IV+GT GRL D+++   +N++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLNNGVDIVIGTTGRLIDYVKQGHINLNAIQVVVLDEADRMYDLGFIKDIRWLFRRMPN 188

Query: 179 KRRMLMF--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               +    SAT+S  +  LA     +   V +  E +    I       +  ++   + 
Sbjct: 189 AAERMNMLFSATLSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     +  I+F +T+         LA    +V  L+G++ Q++R   L+    G   
Sbjct: 249 TLIEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVPQKKRLRILEDFTQGNID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG+ G S+ +  + 
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISLACEE 363


>gi|121591768|ref|ZP_01678973.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
 gi|121546370|gb|EAX56627.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           2740-80]
          Length = 444

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 4   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 61

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 62  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 122 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 182 SATLAHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 242 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 302 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 361

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 362 QQEIQFEVLAGLE 374


>gi|260857814|ref|YP_003231705.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|260870505|ref|YP_003236907.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|257756463|dbj|BAI27965.1| ATP-dependent RNA helicase RhlB [Escherichia coli O26:H11 str.
           11368]
 gi|257766861|dbj|BAI38356.1| ATP-dependent RNA helicase RhlB [Escherichia coli O111:H- str.
           11128]
 gi|323155182|gb|EFZ41366.1| ATP-dependent RNA helicase rhlB [Escherichia coli EPECa14]
 gi|323177790|gb|EFZ63374.1| ATP-dependent RNA helicase rhlB [Escherichia coli 1180]
          Length = 421

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKYRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|55821673|ref|YP_140115.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55823593|ref|YP_142034.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55737658|gb|AAV61300.1| ATP-dependent RNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55739578|gb|AAV63219.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 447

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 195/467 (41%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I EAL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  E+           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPESRDV------QVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D  +   L I      V+DEAD  +D+GF   ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNGQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVFKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 408

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 186/371 (50%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + +AL    +   T +Q   +   L   D++ SAQTG+GKT AF L + + L+  
Sbjct: 7   SLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAKLMGL 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P AL + PTRELA+QV + +      T +   +  GGVS+  + + L  G 
Sbjct: 67  AQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQLAAGV 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D  R     +  +  +V DEAD MLD+GF D+I  ++   P +R+ L+F
Sbjct: 127 DLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSERQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L+  + K   R+ ++ +N    D++ R   V    +   + +++     +
Sbjct: 187 SATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLINKGDWQ 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +  +    L E      A  G+L Q  R   L   R G  +V +ATDVAA
Sbjct: 247 RVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVATDVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L+ V++ EL    ++ +HR GRTGRAG++G++V +  +      E +    + 
Sbjct: 307 RGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEIEALLDK 366

Query: 366 SVVWEPAPSVE 376
            +  +  P  E
Sbjct: 367 RLPQQWLPGFE 377


>gi|321466431|gb|EFX77426.1| hypothetical protein DAPPUDRAFT_213372 [Daphnia pulex]
          Length = 478

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 222/477 (46%), Gaps = 29/477 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + + + +   G    T VQ   +   L  +D +   +TGSGKT AF L +
Sbjct: 8   VSTFNSLKIDEWLIKQIKNLGVDKPTPVQINCIPAILDGRDCIGCDRTGSGKTFAFALPI 67

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             TL  +           AL + PTRELA Q+  + + +     + ++V +GG+ +  + 
Sbjct: 68  VQTLSKDP------YGIYALVLTPTRELAYQIADQFQIIGKPINLRMSVIVGGMGMMDQG 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L N  HIV+ TPGRL DH+      +   +K +V+DEAD +L+  F + ++ I  + P
Sbjct: 122 IELSNHPHIVIATPGRLADHLESCKTFSFKTIKYLVMDEADRLLEGNFDEQLQIIFQALP 181

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +KR+ L+FSATI+  +  L +         +   E     ++D R +LV    +D  +V+
Sbjct: 182 EKRQTLLFSATITDTLNKLREVALNKPFMWSAPVETATVEELDQRYILVPADFKDGYLVH 241

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +++    +      IVF  T  S    +  L E  FQ + L   +SQ+ER   L   R  
Sbjct: 242 VVQNFREEKPKGSIIVFTDTCRSCQILSMTLLELGFQSLCLHSMMSQRERIATLTKFRSN 301

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ +ATDVA+RG+D+P ++L+++  + SNP+  +HR GRT RAGR G S+ +I  N  
Sbjct: 302 TVKILVATDVASRGLDIPTVQLIVNHNVPSNPKEYVHRVGRTARAGRGGFSLTLITPNDI 361

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD- 412
           +    +       +          I+E++  +IL             K+  ++ L + D 
Sbjct: 362 KLLHAIEGRICKELKEFK------IKEKEVVKILTQVAVT-------KREQEINLDEQDF 408

Query: 413 -PEKIAAGFLRIHRAGLCAPEEITPV-SLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             +K      ++   GL   E    + + +  + R  D +  FK    SR      +
Sbjct: 409 GEKKRINKRKKLIEKGLSPEEADREIEADIEWKRRKGDKNSKFKKSRDSRKRDSEEA 465


>gi|237806841|ref|YP_002891281.1| DEAD/DEAH box helicase domain-containing protein [Tolumonas auensis
           DSM 9187]
 gi|237499102|gb|ACQ91695.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
          Length = 469

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 198/372 (53%), Gaps = 7/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+  GY  +T +Q   L   L+ KDVL  A+TGSGKT AF L L   L  ++
Sbjct: 20  LQPALLENLTALGYSEMTPIQAQSLPAVLQGKDVLAQAKTGSGKTAAFALGLLQGLDVKS 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                      L + PTRELA QV  E+  L      V V    GG+ +  +   L+ GA
Sbjct: 80  LNV------QGLVLCPTRELADQVAGEIRRLARLIPNVKVLTLCGGMPIGPQFSSLEQGA 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+  H+  + L+++ LK  VLDEAD MLD+GF D +  I    P++R+ L+F
Sbjct: 134 HIVVGTPGRVQKHLDKESLSLAALKTWVLDEADRMLDMGFADAMREIAKVCPRQRQTLLF 193

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L+  +Q++ + V + S +           L     +  A++ +L+++  +
Sbjct: 194 SATYPEDIQRLSTEFQRNPLSVRVESTHSAVQIEQRFFELPNQEAKFPALLKLLQHYQPR 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++FC+ +    +    L+   +  +AL+G+L Q+ER   +    +    + +ATDVAA
Sbjct: 254 STVIFCNMKHQTQQVADALSAQGYSALALNGDLEQRERDQVVVRFSNQSCAILVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L+ V++ +L+ +PE  +HR GRTGRAG+ G+++ +   +   R  ++      
Sbjct: 314 RGLDIKELQAVVNYDLTPDPEIHVHRIGRTGRAGQTGLALTLTTASQTNRVLQIEDYQQS 373

Query: 366 SVVWEPAPSVEA 377
             VW     ++ 
Sbjct: 374 QAVWGNLDELKK 385



 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
            ++     +         L  G K K     ++  L + +G N Q IG I +     +V 
Sbjct: 381 DELKKNPDNMKPEMVTLCLDGGRKSKVRPGDILGALTKEAGFNGQHIGKINIAELHAYVA 440

Query: 513 VSADGVDLL 521
           V     + +
Sbjct: 441 VHHSIANKV 449


>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
 gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E+  PQ + +    + +   T +Q    +  +  +D++  A+TGSGKT+A+ L   
Sbjct: 78  MHFHESGFPQYMLDEFQRQAFKEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPAL 137

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +  R +    P+AL +APTRELA Q+ +  +    + G+      GG S + +  
Sbjct: 138 VHISNQ-PRIARGDGPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQES 196

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      
Sbjct: 197 DLRRGVEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPD 256

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAI 235
           R++LM+SAT    I  LA+ + +D +++NI S     N     I          +R   +
Sbjct: 257 RQVLMWSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQIIDCCEEYEKENRLFKL 316

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+  V +   V+    ++   + G+ SQ++R   L   R    
Sbjct: 317 LEQISSQNDGKTIIFVETKRKVDKIVNVIRRQGWRADGIHGDKSQKDRDYVLNTFRRSTN 376

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVA+RG+D+ D++ VI+ +  +N E+ +HR GRTGR+  KG S          +
Sbjct: 377 GILVATDVASRGLDVDDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANSSK 436

Query: 356 AERL---FREANVSVVWE 370
           A  L    ++AN  +  E
Sbjct: 437 APDLITVLQDANQYINPE 454


>gi|319778596|ref|YP_004129509.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
 gi|317108620|gb|ADU91366.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
          Length = 581

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 126/400 (31%), Positives = 201/400 (50%), Gaps = 25/400 (6%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++   Q + ++L    + N T VQ   +   L+ KD++VSAQTGSGKT AF L     
Sbjct: 6   FADLGIEQTLLKSLERIDFRNPTEVQVKSIPLALKGKDLIVSAQTGSGKTAAFMLPSIQQ 65

Query: 62  LLAE---------------------NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYA 99
           LL E                     ++   P      L + PTRELA+QV     E++Y 
Sbjct: 66  LLHELETRPAPEQIASKSSKQRKRRSEANPPKYGVQILVLTPTRELAMQVSDATKEFIYG 125

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             GV +A  +GG++   +   L     IVV TPGRL DHI+   +N+ +LK ++LDEAD 
Sbjct: 126 FKGVHIATLVGGMAYGPQINSLSREVEIVVATPGRLLDHIKAGRVNLRNLKILILDEADR 185

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           MLD+GF  DI  ++  +P  R+ L+FSAT    +  LA++   D  R+ ++    +H +I
Sbjct: 186 MLDMGFIHDINNVVAETPDDRQTLLFSATFEGNVVKLARDMLTDPERIIVSDHTDKHQNI 245

Query: 220 DYRAVL-VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +        +  +   +  +L+   A+  IVF  T+   +     L +   +   L G++
Sbjct: 246 EQYLFYADTVGHKFKLLEALLKDPEAEQVIVFTKTKRGATDLAGRLKDIDIKASELHGDM 305

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q +R+  +Q +  G+ +V +ATDVAARGID+  +  VI+ +L    E+ +HR GRTGRA
Sbjct: 306 NQGQRNRTIQGLHKGKIKVLVATDVAARGIDIQGISHVINYDLPMQAEDYVHRIGRTGRA 365

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           GR G +  +   + +R    +    N        P +E +
Sbjct: 366 GRDGRAYTLALLSERRGVRFIENYINREFDIAVIPGLEPV 405


>gi|187922064|ref|YP_001893706.1| ATP-dependent RNA helicase DbpA [Burkholderia phytofirmans PsJN]
 gi|187713258|gb|ACD14482.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A N
Sbjct: 16  LPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 76  ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I            +    +E   ++ I  R   V    R +A+  +L ++   
Sbjct: 190 SATYPEGI-VKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDGRLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     +  +     +R+L  P+    I G  K+ + 
Sbjct: 369 EVEWHK---LSELTAASNERLL-PPMETLQILGGRKEKIR 404



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      + LR
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIGKINVTEMSTYVAVERSIAREALR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|114794734|pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
          Length = 417

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 14  IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 73

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 74  LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 134 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 193

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 194 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 253

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 254 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 313

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 314 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 373

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 374 GLATSFFNERNINITKDLLDLLVEAKQEVP 403


>gi|88704045|ref|ZP_01101760.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
 gi|88701872|gb|EAQ98976.1| ATP-dependent RNA helicase rhlB [Congregibacter litoralis KT71]
          Length = 427

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 184/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + +   LL  
Sbjct: 50  DLHPTLMHGIAEIGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLKH 109

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL +Q+  + E L   TG     +  G     +  +  + 
Sbjct: 110 PHEGERFLGEPRALVIAPTRELVMQIAADAEDLGKHTGLNTCTLIGGMDYQKQLNQLGRE 169

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL D    + L +  ++ +VLDEAD MLD+GF   ++ I+  +P K    
Sbjct: 170 VVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQ 229

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  I  L++ +  DA+ + I  ++     +D R  L +  +R   +VN+LR 
Sbjct: 230 TLLFSATFTQDIINLSQQWTTDAITIEIEPDHVATDSVDQRIYLASSEERFRILVNLLRS 289

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A + IVF + R  V R  + L +       LSGE++Q +R+  L   + G   V +AT
Sbjct: 290 DDASSVIVFANRRDQVRRLFERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVAT 349

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G S+    ++       L  
Sbjct: 350 DVAGRGIHVDGVTHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAFLLPDLEA 409

Query: 362 EANVSVVWEPAPS 374
                VV E  P+
Sbjct: 410 LLGEPVVCEHPPA 422


>gi|325923904|ref|ZP_08185503.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325545614|gb|EGD16869.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 458

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD + + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPIEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG++G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKRGLALSLVASRETGRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAHV 436


>gi|126325503|ref|XP_001378186.1| PREDICTED: similar to helicase like protein 2 [Monodelphis
           domestica]
          Length = 829

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 345 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 404

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 405 LSQIYTDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 464

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 465 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 524

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++     +      +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 525 PQIRRIVEQDTMPQKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 584

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 585 VVWVEEADKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 644

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 645 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 704

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++         N+ +    L  EA   V 
Sbjct: 705 GLATSFFNDRNINITKDLLDLLVEAKQEVP 734


>gi|15239187|ref|NP_201391.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|108861887|sp|Q9SB89|RH27_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 27
 gi|2827700|emb|CAA16673.1| DEAD box ATP dependent helicase protein [Arabidopsis thaliana]
 gi|9759574|dbj|BAB11137.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|16649121|gb|AAL24412.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|24899721|gb|AAN65075.1| ATP-dependent RNA helicase-like [Arabidopsis thaliana]
 gi|332010738|gb|AED98121.1| DEAD-box ATP-dependent RNA helicase 27 [Arabidopsis thaliana]
          Length = 633

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 196/423 (46%), Gaps = 11/423 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE++       +++ E G+  +T +Q   + P +  +DVL +A+TGSGKT+AF +   
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F+P +    L I PTRELA+Q     + L       V   IGG     E  
Sbjct: 214 ELLY--RVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAE 271

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH+         +LK +V+DEAD +L+  F +D++ IL+  PK
Sbjct: 272 ILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPK 331

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
            R+  +FSAT S  +  LA+      V +++    ++ ++   +    +V  + R   ++
Sbjct: 332 TRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLL 391

Query: 237 NILRYHGAKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             L+    K  I+ F ST  S     ++     F  + + G + Q +R+           
Sbjct: 392 TFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAET 451

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQR 354
            + + T+VAARG+D P ++ ++  +   NP + +HR GRT R  G KG ++ V+     +
Sbjct: 452 GILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELK 511

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + L + A + V        + +  +   + ++ +   L     +  K        H  
Sbjct: 512 FIQYL-KAAKIPVEEHEFEEKKLLDVKPFVENLISENYALKESAKEAYKTYISGYDSHSM 570

Query: 414 EKI 416
           + +
Sbjct: 571 KDV 573


>gi|311743785|ref|ZP_07717591.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
 gi|311312915|gb|EFQ82826.1| ATP-dependent RNA helicase DeaD [Aeromicrobium marinum DSM 15272]
          Length = 470

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/367 (32%), Positives = 180/367 (49%), Gaps = 6/367 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST----LLA 64
             I +AL+  G      +QE  L+  L   D++  A+TG+GKT+AF + +          
Sbjct: 2   PEIADALTGHGIETPFPIQEMTLSVALMGTDLIGQARTGTGKTLAFAIPVIQRTVAPHDP 61

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E    +    P AL IAPTRELA+QV  ++       G       GGV    +   L++G
Sbjct: 62  EYGELAAPGKPQALIIAPTRELAIQVAGDVAMASKLRGTRNLTIYGGVPYEGQLDALESG 121

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ D    + L++SH+K++VLDEADEMLDLGF  D+E IL  +P+ R+ ++
Sbjct: 122 VDIVIGTPGRILDLANRRALDLSHVKSMVLDEADEMLDLGFLPDVEAILAKTPELRQTML 181

Query: 185 FSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           FSAT+  AI             +R   + + +               D+   +  IL+  
Sbjct: 182 FSATMPGAIVGLARKHMRHPMNIRAESSEDTQMVPATAQFVWQAHDMDKPEIVSRILQAD 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ +  R    L +  F    L G+++Q  R  ALQ  RDG+    +ATD
Sbjct: 242 DVARVIIFTRTKRTAQRVADELVDRGFPASPLHGDMAQTAREKALQRFRDGKINTLVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ ++  VI+     + +  +HR GRTGRAG  G++V  +      R + +   
Sbjct: 302 VAARGIDVANISHVINYNCPEDDKTYVHRIGRTGRAGASGIAVTFVDWADLHRWKMINTA 361

Query: 363 ANVSVVW 369
             +    
Sbjct: 362 LGLPFAE 368


>gi|229526303|ref|ZP_04415707.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229336461|gb|EEO01479.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|303285500|ref|XP_003062040.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456451|gb|EEH53752.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 362

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 168/365 (46%), Gaps = 10/365 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            + E+G+   + +QE  +   L  +D+L  A+ G+GKT AF + +   +           
Sbjct: 2   GIFEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFTIPVLEKVDVSKKII---- 57

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
              A+ + PTRELA+Q  +  + L     V V V  GG S+  +   L    HIVV TPG
Sbjct: 58  --QAILLVPTRELALQTSQVAKELGKHLDVQVMVTTGGTSLKDDIMRLHQPVHIVVATPG 115

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D        +++   +V+DEAD++L   F+  I  ++D  P+ R++L++SAT    +
Sbjct: 116 RLVDLASKNVAKLNNATMLVMDEADKLLSPEFQPVIAQLIDFLPRNRQILLYSATFPVTV 175

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
                 Y +    +N+  E             V    + + +  +        +I+FC++
Sbjct: 176 KEFKDRYLRKPYVINLMEELTLKGI-TQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNS 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
              V    K + E  +    +  ++ Q  R+      R+G  R  +++D+  RGID+  +
Sbjct: 235 VNRVELLAKKITELGYSCFYIHAKMLQSHRNRVFHDFRNGACRNLVSSDLFTRGIDIQSV 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA- 372
            +VI+ +   N E  LHR GR+GR G  G+SV +I  + +    R+ +E    +   P  
Sbjct: 295 NVVINFDFPKNSETYLHRVGRSGRFGHLGISVNLITYDDRFNLFRIEQELGTEIQQIPPV 354

Query: 373 --PSV 375
             PSV
Sbjct: 355 IDPSV 359


>gi|91179150|gb|ABE27759.1| vasa [Chlamys farreri]
          Length = 801

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 13/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE   I       L +  +   T VQ+  +   +  +D++  AQTGSGKT AF L +
Sbjct: 351 IKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPV 410

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++        FS    P AL +APTRELA+Q+  +       T +   V  GG SV 
Sbjct: 411 LTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSHGTMLRPVVLYGGTSVG 470

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + ++NGAHIVVGTPGRL D I    ++++ LK ++LDEAD MLD+GF  DI+ I+  
Sbjct: 471 YQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIVHE 530

Query: 176 S----PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  +R+ LMFSAT    I  LA ++  D + + +       SD+      V    +
Sbjct: 531 LGTPEKTERQTLMFSATFPEEIQKLAGDFLNDYLFLTVGRVGGACSDVTQHFFQVDRQQK 590

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + +IL   GA   +VF   + +       L+E  F   ++ G+  Q+ER  AL+  +
Sbjct: 591 RQKLCDILSESGADKTLVFVEQKRNADFLASYLSESGFPTTSIHGDRLQREREEALRDFK 650

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+A + IAT VAARG+D+P+++ VI+ +L  + +  +HR GRTGR G  G +     ++
Sbjct: 651 QGKAPILIATSVAARGLDIPNVKHVINYDLPQSIDEYVHRIGRTGRCGNLGKATSFFSED 710

Query: 352 ----MQRRAERLFREANVSVV 368
               + +   R+  +A  ++ 
Sbjct: 711 GDGSLAKPLMRILVDAQQNIP 731


>gi|167614869|ref|ZP_02383504.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis Bt4]
          Length = 465

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 204/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 70  LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 124 LEHGAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L+
Sbjct: 184 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 363 QALGRDVEWHPLAELKA----DGNEPLLPPMETLQILGGRKDKIR 403



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIGKINVTEFSTYVALE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|167576699|ref|ZP_02369573.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis TXDOH]
          Length = 465

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 204/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 70  LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 124 LEHGAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L+
Sbjct: 184 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 363 QALGRDVEWHPLAELKA----DGNEPLLPPMETLQILGGRKDKIR 403



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIGKINVTEFSTYVALE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIAHDALRKLNAGKIKGKRVKVRLMD 464


>gi|161723115|ref|YP_438416.2| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 204/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 70  LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 124 LEHGAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L+
Sbjct: 184 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 363 QALGRDVEWHPLAELKA----DGNEPLLPPMETLQILGGRKDKIR 403



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIGKINVTEFSTYVALE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|254284787|ref|ZP_04959754.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
 gi|150425572|gb|EDN17348.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           AM-19226]
          Length = 452

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|83652036|gb|ABC36100.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 562

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 204/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 107 FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 167 LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 220

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 221 LEHGAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 280

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L+
Sbjct: 281 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 340 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 400 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 459

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 460 QALGRDVEWHPLAELKA----DGNEPLLPPMETLQILGGRKDKIR 500



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 475 KADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIGKINVTEFSTYVALE 534

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 535 RGIARDALRKLNAGKIKGKRVKVRLMD 561


>gi|16764999|ref|NP_460614.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992838|ref|ZP_02573934.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262502|ref|ZP_03162576.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|16420182|gb|AAL20573.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240757|gb|EDY23377.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205329063|gb|EDZ15827.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246847|emb|CBG24663.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993587|gb|ACY88472.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158183|emb|CBW17681.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912646|dbj|BAJ36620.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224281|gb|EFX49344.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129924|gb|ADX17354.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988542|gb|AEF07525.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTTFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|313246316|emb|CBY35237.1| unnamed protein product [Oikopleura dioica]
          Length = 653

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 179/372 (48%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +  +I E +    Y   T VQ+  +      +D++  AQTGSGKT AF + + S +   
Sbjct: 203 ELGPIITENVKLAHYTVPTPVQKYAVPIIHAGRDIMSCAQTGSGKTAAFLMPMLSNIFHN 262

Query: 66  NDRF----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
             +     S  + PLAL ++PTREL  Q+ +E      ++ V   V  GG  V  + RDL
Sbjct: 263 PGKIPRHQSRKAYPLALVLSPTRELTNQIYQEALKFAYRSKVRPCVIYGGADVGEQLRDL 322

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G H++V TPGRL D +    + +   + + LDEAD MLD+GF   I  I++       
Sbjct: 323 SRGCHLLVATPGRLADFLERGKVGLEFCRFLCLDEADRMLDMGFEPQIRRIIEKVIFPSD 382

Query: 182 ML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               MFSAT    I  LA ++ ++ + + +       ++I  R   V  +++   +  +L
Sbjct: 383 RQTLMFSATFPKQIQALASDFLENYIFLAVGRVGSTSANITQRFEYVQETEKVRKLCELL 442

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+         L E  +Q   + G+ +QQER  A+ + + G+  + +
Sbjct: 443 ENGQEMLTIVFTETKKGADYLDHFLHERGYQSTCIHGDRNQQEREEAVHLFKSGQTPILV 502

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RA 356
           AT VAARG+D+P++  VI+ +L S  +  +HR GRTGRAG  G +     +   +     
Sbjct: 503 ATAVAARGLDIPNVRHVINFDLPSEIDEYVHRIGRTGRAGNTGWATAFYNEKNAKISDDL 562

Query: 357 ERLFREANVSVV 368
            +L  EA   V 
Sbjct: 563 LQLLTEAKQEVP 574


>gi|303256630|ref|ZP_07342644.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
 gi|302860121|gb|EFL83198.1| putative ATP-dependent RNA helicase [Burkholderiales bacterium
           1_1_47]
          Length = 423

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + + +   G+ + T +Q   +    +  D+L +AQTG+GKT AF L +   ++ E 
Sbjct: 10  FAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQKII-EE 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTRELA QVG  +  L    GV  AV  GGV ++ ++  +  G  
Sbjct: 69  PTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAKGLD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +V TPGRL D +     ++S    ++LDEAD MLD+GF  D++ IL + P  R+ L+FS
Sbjct: 129 FLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQTLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LA  +  +         N+  S +      V  +D+   + +++  +    
Sbjct: 189 ATFSPEIKKLASEF-LNKPESVEIERNKDSSLVRQTLYRVPKADKHTVLRDLIVDNQWDQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  + L +      A+ G+ SQ  R+ AL+  ++ +  + +ATD+AAR
Sbjct: 248 VLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL    E+ +HR GRTGRAG  G +  ++      +   + +     
Sbjct: 308 GLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQLAAIEKFIKKP 367

Query: 367 VVWEPAPSVE 376
           +     P ++
Sbjct: 368 LPLSDFPRLD 377


>gi|281209492|gb|EFA83660.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 880

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 167/347 (48%), Gaps = 7/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   ++  GY   + +Q   +   L+E++V+  A TGSGKT AF + +  TL   
Sbjct: 391 SLKNYLSRNIASMGYSQPSPIQMQAIPAILKEREVIACAPTGSGKTAAFTIPILHTLNKP 450

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+ I+PTRELA Q+ R+           + V   G+S   +        
Sbjct: 451 Q-----KVGFRAVIISPTRELAQQIYRQFRLFSKGKPFRICVLTKGLSQSNKAEPFSKTF 505

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++ TP RL   I+ + +N++ ++ +V DEAD++ D  F + ++ ++++   K+  +  
Sbjct: 506 DILITTPLRLVHLIKEENVNLNKVEHLVFDEADKLFDQQFVEQVDDVVNACKNKKLKISL 565

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHG 243
           FSAT++  +  +A++   + +++ I  EN   +++D +   +     +  A+  + +   
Sbjct: 566 FSATMNNLVEDMARSIMNNPIKIVIGQENSASTNVDQKLIFVGKEEGKLLAVRQLFQKGL 625

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  ++       + L      V  +  + +Q +R   ++  R G+  V I T++
Sbjct: 626 EPPVLIFVQSKERAQELFQELIFDNINVDVIHSDRTQFQRDKIVEKFRTGKIWVLICTEL 685

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            ARG+D   +  VI+ +      + +HR GRTGRAGR G++  +  +
Sbjct: 686 MARGMDFKGVNYVINFDFPKTVASYVHRIGRTGRAGRTGVAYTLYTE 732


>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
 gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
          Length = 460

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 180/390 (46%), Gaps = 9/390 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+ +     T +Q   +   +  KDVL S++TGSGKT+AF L +    L   
Sbjct: 23  LDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL--K 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    + P A+ +APTRELA QV   L  +         +  GG + + +   L+    
Sbjct: 81  TKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPK 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF + ++ I        ++  M 
Sbjct: 141 FIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMF 200

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +                        S +          +   L  +   +  I+    
Sbjct: 201 SATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETED 260

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +TR+   R TK+L E   + VALSG+++Q  R+N +        ++ + TDV
Sbjct: 261 YFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDV 320

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----L 359
           A+RG+DL  +  VI+ ++  + E  +HR GRTGRAG+KG ++ ++        +R    L
Sbjct: 321 ASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVETFL 380

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
            ++ + SV  E     + ++ +  +  ++ 
Sbjct: 381 QQDLSFSVFEELKGKFKGLKPKHKRTFVKK 410


>gi|157876896|ref|XP_001686790.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129865|emb|CAJ09171.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 573

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/370 (29%), Positives = 188/370 (50%), Gaps = 10/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ +   L  +G+   T +Q    +  L  +D++  A+TGSGKT+AF +   + +  + 
Sbjct: 113 VPQYLKAKLLAQGFTAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 172

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ + +APTRELA Q+ +E   +  ++ +      GG     +   L+ G H
Sbjct: 173 P-LKVGDGPMVIVLAPTRELAQQIEQEAIKVLPQS-IRCGCIYGGAPKGPQLGLLRQGVH 230

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +N+  +  +V+DEAD MLD+GF   +  I       R+ LMFS
Sbjct: 231 ILVATPGRLIDFMEIKRVNLLRVTYLVMDEADRMLDMGFEPQVRAICGQIRPDRQTLMFS 290

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QK+ VR+N+ S     + D+    +L + + + + +  ++  H  +
Sbjct: 291 ATWPREIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLIERHRNQ 350

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDVAA
Sbjct: 351 RVLIFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDPRLCVVATDVAA 410

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-------RAER 358
           RG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++  +       +   
Sbjct: 411 RGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHETQLNASTVFQLVE 470

Query: 359 LFREANVSVV 368
           L   A   V 
Sbjct: 471 LVERAGQEVP 480


>gi|21231720|ref|NP_637637.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768154|ref|YP_242916.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991291|ref|YP_001903301.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21113422|gb|AAM41561.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573486|gb|AAY48896.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733051|emb|CAP51249.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 458

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 187/377 (49%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTTLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  + + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLLVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLARELLKDPVEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLAAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRESARA 353

Query: 357 ERLFREANVSVVWEPAP 373
           + L  E    + W  AP
Sbjct: 354 QALEAEHGQPLKWSRAP 370



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 31/81 (38%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPLAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGVDLLRRTVKLDKGIQLKY 535
              V      ++  K    ++
Sbjct: 433 RAQVARALTHLQAGKIKGRRF 453


>gi|290477139|ref|YP_003470054.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289176487|emb|CBJ83296.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 427

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 183/372 (49%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL ++G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLTSTF 68

Query: 60  STLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL          + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ 
Sbjct: 69  HYLLTHPAAADHKTNQPRALIMAPTRELAVQIYSDAEELAEATGLKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  IV+GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLESGVDIVIGTTGRLIDYTKQGYVNLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPV 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + +   FSAT+S  +  LA         V +    +    I       +  ++   + 
Sbjct: 189 AAQRMNLLFSATLSYRVRELAFEQMNSPEYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        I+F +T+         LA    +V  L+G+++Q++R   L+    G   
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPFVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +       + 
Sbjct: 369 TSIEEYIQHQIP 380


>gi|94500946|ref|ZP_01307471.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
 gi|94426886|gb|EAT11869.1| putative ATP-dependent RNA helicase DbpA [Oceanobacter sp. RED65]
          Length = 466

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 130/400 (32%), Positives = 198/400 (49%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L + GY  +  +Q   L   +  KDV+  A+TGSGKT AF L L   L  + 
Sbjct: 15  LDPALLQNLEDLGYQQMRPIQAQSLPAIIEGKDVIGQAKTGSGKTAAFALGLLHHLDVKR 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      + V    GG+    +   L++GA
Sbjct: 75  FRV------QHLVLCPTRELADQVAKEIRQLARAIHNIKVLTLCGGMPFGPQVGSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +HIR   L +  +   VLDEAD MLD+GF+D +E I+++ PK+R+ L+F
Sbjct: 129 HIVVGTPGRIEEHIRKNNLPLKDITGFVLDEADRMLDMGFQDSLESIVNALPKQRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA       VRV +   +           L     R  A+  +L+    +
Sbjct: 189 SATYPENIEKLAAWVTNKPVRVEVQESDVHSQIKQLFYRLQDNKQRMTALSLLLKKEKPE 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           ++IVFC+T+         L    F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 249 SSIVFCNTKREAQEIADELRSQGFSAVALHGDLEQRQRDQTLVRFANKSASIMVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  ++ V +  L+ +PE  +HR GRTGR  +KG +          +   L    +V
Sbjct: 309 RGLDIESVDAVFNYHLARDPEVHVHRVGRTGRGDKKGKAFSFYTDKEGYKLVALEETLSV 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
               +  P   ++ ++ A    + P+    I G +K+ V 
Sbjct: 369 DATAQKLPDF-SVLDKPA---FKAPMATLQIDGGKKQKVR 404



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 24/65 (36%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
             +   +  G KQK     ++  L   +GI  + +G I V     +V V  D      + 
Sbjct: 389 PMATLQIDGGKKQKVRPGDILGALTGKNGIAGKQVGKISVLDYCAYVAVERDAAKPALKK 448

Query: 525 VKLDK 529
           +   K
Sbjct: 449 LSEGK 453


>gi|227886220|ref|ZP_04004025.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|227836424|gb|EEJ46890.1| ATP-dependent RNA helicase DbpA [Escherichia coli 83972]
 gi|307553405|gb|ADN46180.1| ATP-independent RNA helicase DbpA [Escherichia coli ABU 83972]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +       +      AL + PTRELA QV  EL  L    +   +    GG     
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLEAE 381



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|26247679|ref|NP_753719.1| ATP-dependent RNA helicase DbpA [Escherichia coli CFT073]
 gi|26108081|gb|AAN80281.1|AE016760_140 ATP-independent RNA helicase dbpA [Escherichia coli CFT073]
          Length = 457

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +       +      AL + PTRELA QV  EL  L    +   +    GG     
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLEAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKPWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|297828586|ref|XP_002882175.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328015|gb|EFH58434.1| hypothetical protein ARALYDRAFT_477362 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 625

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 6/363 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  +   +   G+   T +Q       ++ +D++  A+TGSGKT+ + +    
Sbjct: 165 SFEATGFPSELLREVLNAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 224

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +  R      P  L ++PTRELA Q+  E       + +      GG     + RD
Sbjct: 225 HL--QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD 282

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P KR
Sbjct: 283 LERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKR 342

Query: 181 RMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +       V +    E   +  I     +VA  ++   +  I
Sbjct: 343 QTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQI 402

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +           F   A+ G+ SQ ER N L   R GR  V 
Sbjct: 403 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVL 462

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  V++ +  +  E+ +HR GRTGRAG  G +         + A  
Sbjct: 463 VATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASD 522

Query: 359 LFR 361
           L +
Sbjct: 523 LIK 525


>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
 gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
          Length = 396

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 4/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + +++ GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKL---- 63

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 64  RQGQRKKRIRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVD 123

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 124 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 183

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK   +D   ++IA+     S+I    + V    +   + +++       
Sbjct: 184 ATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 244 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 304 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLCMIESRLGHL 363

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 364 IERRVVEGFE 373


>gi|225860734|ref|YP_002742243.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229616|ref|ZP_06963297.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255810|ref|ZP_06979396.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502545|ref|YP_003724485.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|225727110|gb|ACO22961.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238140|gb|ADI69271.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
 gi|327390117|gb|EGE88460.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA04375]
          Length = 447

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             +I++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KIVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|148557617|ref|YP_001265199.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148502807|gb|ABQ71061.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 453

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 188/365 (51%), Gaps = 1/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  AL+ +GY   T +Q   + P L  +D+   AQTG+GKT AF L     L  +N +
Sbjct: 25  EPIQRALAAKGYDIPTPIQAQAIPPLLEGRDLCGIAQTGTGKTAAFALPSLHHL-HDNLK 83

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
            +P      L +APTRELA Q+            + VA   GGV ++++ R LQ G  I+
Sbjct: 84  HTPPQGCRMLVLAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINKQIRQLQRGVDIL 143

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D I  + L++  ++  VLDEAD+MLDLGF   ++ +    PKKR+ L FSAT
Sbjct: 144 VATPGRLLDLIDQRALSLKFVEIFVLDEADQMLDLGFIHALKRVDQLLPKKRQSLFFSAT 203

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +  AI  L   +  +  +V++A ++     ++  A      ++   +   +R      A+
Sbjct: 204 MPKAIAELGDRFLTNPAKVSVAPQSTTAERVEQFATFCNPQEKQALLTMRIRSEPIDRAL 263

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF  T+    R  K L        A+ G  SQ +R  AL + R G  ++ +ATD+AARGI
Sbjct: 264 VFTRTKHGADRVVKNLRAAGIAAEAIHGNKSQPQRERALGLFRTGEVKILVATDIAARGI 323

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  +  V + EL +  E  +HR GRT RAG  G+++  +  + +   + + +   V + 
Sbjct: 324 DVGGVSHVFNFELPNVAEQYVHRIGRTARAGAAGIAIAFVADDERPYLKAIEKLTKVKLD 383

Query: 369 WEPAP 373
            +P P
Sbjct: 384 IQPLP 388


>gi|209879275|ref|XP_002141078.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209556684|gb|EEA06729.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 397

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 194/374 (51%), Gaps = 8/374 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  ++ + +   +   G+   + VQ+  + P ++ +DV+V +Q+G+GKT  F +   
Sbjct: 23  NTFESMDLKEELLRGIYSYGFELPSVVQKRAIVPIIKGRDVVVQSQSGTGKTCVFTVGAL 82

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                  +R      P AL ++PTRELA Q  +    L     + V  C+GG  ++ + +
Sbjct: 83  QLCNRTTERL-----PQALILSPTRELAEQSQKVCSALGEYLDINVYCCVGGRKLNDDIK 137

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            LQ+G  IV GTPGR+   I    L    ++ ++LDEADEMLD GF+  +  I    P +
Sbjct: 138 ALQSGVTIVSGTPGRVIHMIEQGYLITRRIRLLILDEADEMLDFGFKRQVYDIYKYLPPR 197

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
            ++++ SAT+   I  + +   KD +++ +  +N     I      +     + + + ++
Sbjct: 198 IQIILVSATLPEEIIEITEKIMKDPLKILVKRDNLTLEGIRQFYIYVEQEQWKFDTLCDL 257

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+ +A V   +  + E+ F V  + G+LSQ++R   L+  R G+ RV 
Sbjct: 258 YDTLTITQSVIFCNKKAKVEWLSSKMIENHFTVSFVHGDLSQKDREQILREFRQGKTRVL 317

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+  RGID+  + LVI+ ++ +N E  +HR GR+GR GRKG+++ ++ +   +  + 
Sbjct: 318 IATDLWGRGIDIQQINLVINYDIPTNKELYIHRIGRSGRFGRKGVAINLVKEEEVKILKD 377

Query: 359 LFREANVSVVWEPA 372
           +    +  +   PA
Sbjct: 378 IEHFFSTRIEEMPA 391


>gi|145476289|ref|XP_001424167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391230|emb|CAK56769.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 13/374 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F  +P+ + E L  R   + +S+Q+AI+       DV+  A+TGSGKT+A+ L     
Sbjct: 104 QNFNFLPESLQETLKARNITSPSSIQQAIMPLIFDGHDVIAIAETGSGKTLAYALPGIMH 163

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A+     P + P  L +APTRELA Q+  + +            C+ G      +   
Sbjct: 164 LQAQP----PVAGPRILVMAPTRELAQQIQTQYDLFAK------TCCLYGGIPKPHQYVS 213

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +    V+             GL +  +  VVLDEAD MLD+GF D I  +L    K R+
Sbjct: 214 LSETPQVIIATPGRLLDFIKGGLTLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQ 273

Query: 182 MLMFSATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            L FSAT    +  LA +   +D + + +       +    ++V++A  ++   ++    
Sbjct: 274 TLFFSATWPQEVQRLANSLCSQDPIFLQLGERGLSVNKNITQSVIIAGGNKFEQLIEYFN 333

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VFC  +    +    L++H      L G+L Q +R   +Q  R+G+    I 
Sbjct: 334 QIKDKKVLVFCQKKIDTQKLEYRLSQHGVNARYLHGDLKQNQRDYIMQDFRNGKVNCLIT 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAE-R 358
           T++A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG ++  I P+++  R +  
Sbjct: 394 TNLASRGLDVSDVDVVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIQPRDLDYRLKDD 453

Query: 359 LFREANVSVVWEPA 372
           L +    S    P 
Sbjct: 454 LIKVFKQSSQEIPL 467


>gi|109896916|ref|YP_660171.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
 gi|109699197|gb|ABG39117.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas atlantica T6c]
          Length = 459

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/407 (32%), Positives = 219/407 (53%), Gaps = 14/407 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + + L   G+  +T +Q   L   L  +DV+  A+TGSGKT AFGLAL 
Sbjct: 3   KEFSSLGLEAALLDNLQSMGFSQMTEIQAGTLPAILEGRDVVAKAKTGSGKTAAFGLALL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             L  +  R        AL + PTRELA QV  E+  L      + V    GG  +  + 
Sbjct: 63  HNLDVKRFRV------QALVMCPTRELAEQVALEIRRLGRGIHNIKVLTLCGGTPMGPQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+  + L++S +  +VLDEAD MLD+GF D+++ ++ S P+
Sbjct: 117 GSLEHGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPE 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT   +I  ++   QK  + V + S +   +  +     V  + R  A+  +
Sbjct: 177 QRQTLLFSATYPDSIAAISGQVQKSPLEVTVESTHDTDTI-EQVFFEVEDAHRTKAVAAL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L ++  ++AIVFC+T+ +       L      V+AL G+L Q+ER+  L    +  A V 
Sbjct: 236 LSHYQPESAIVFCNTKIACQEVADELQSMGVSVLALHGDLEQRERNQVLVRFANKSASVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ ++  VI   ++ +PE  +HR GRTGRA  KG+++ ++  +   RA  
Sbjct: 296 VATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEMARANA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       + W     ++A+R   A R++Q       + G +K  + 
Sbjct: 356 IEDYQKAKLKWT---GIQAMR-FHANRLIQPQYSTLCVDGGKKAKLR 398



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +  G K K     L+  L + + I    IG I +     +V V    V    R +   K 
Sbjct: 389 VDGGKKAKLRPGDLLGALTKEAEIPGDDIGKIHITEFHAYVAVKTRSVKRAMRQLGEGKI 448

Query: 531 IQLKY 535
              K+
Sbjct: 449 KGKKF 453


>gi|328711288|ref|XP_001948608.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 1
           [Acyrthosiphon pisum]
 gi|328711290|ref|XP_003244501.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A isoform 2
           [Acyrthosiphon pisum]
          Length = 579

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/383 (27%), Positives = 180/383 (46%), Gaps = 15/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  + +V+ E L +  Y   T +Q+  +   +  +D++ +AQTGSGKT AF L +
Sbjct: 160 IESFKSSGLREVLIEKLVKCNYTTPTPIQKYCIPVIISGRDMMATAQTGSGKTAAFVLPI 219

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             TLL++            P  + ++PTRELA+Q+   +  L   T +  ++  GG +  
Sbjct: 220 VHTLLSQPQDLVFDRDYCEPQCIIMSPTRELAIQIRDVVFKLTNGTCIKQSILYGGTATG 279

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L NG HI+V TPGRL D +    ++ + L+  VLDEAD MLD+GF+ DIE IL+ 
Sbjct: 280 HQRGTLANGIHILVATPGRLNDFVGRGYVSFNSLRFFVLDEADRMLDMGFKPDIEKILNH 339

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR------QHSDIDYRAVLVALS 229
                     +   S  +    +   K  ++ N                      +    
Sbjct: 340 ETMVDVNTRQTLLFSATLADDIQMLSKAYLKPNYVFVAVGEIGGACKDVKQEIREVTKFE 399

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   I  +      K  +VF   + +       L+E  +   ++ G+  Q ER  AL+ 
Sbjct: 400 KKKELIKVLESLGDCKGTMVFVEQKRNADFIAAFLSEKDYPTTSIHGDREQPEREQALRD 459

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            ++ R ++ +AT VAARG+D+  +  VI+ ++ S+ +  +HR GRTGR G  G +V    
Sbjct: 460 FKNNRMKILVATAVAARGLDIKGVNCVINFDMPSSIDEYVHRIGRTGRLGNSGRAVSFYD 519

Query: 349 ---PQNMQRRAERLFREANVSVV 368
                N+     R+ ++A   V 
Sbjct: 520 STSDSNLSSDLVRILKQAEQEVP 542


>gi|158298749|ref|XP_318913.4| AGAP009808-PA [Anopheles gambiae str. PEST]
 gi|157014035|gb|EAA14161.4| AGAP009808-PA [Anopheles gambiae str. PEST]
          Length = 510

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/420 (26%), Positives = 208/420 (49%), Gaps = 12/420 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K +E++     +  A     +   + +Q   +   L+ KD++  A+TGSGKT AF L + 
Sbjct: 56  KSWEDLGLIDTLCTACRGLKWKAPSKIQREAIPLALQGKDIIGLAETGSGKTGAFALPIL 115

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    R+       A+ + PTRELA Q+  + E L A  GV   V +GG+ +  +  
Sbjct: 116 QALLDNPQRY------FAVVLTPTRELAYQISEQFEALGATIGVKCCVIVGGMDLVTQAI 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI++ TPGRL DH+          ++ +V+DEAD +L++ F +++  IL   P+
Sbjct: 170 QLARKPHIIIATPGRLVDHLENTKGFSLKAIRYLVMDEADRILNMDFEEEVNKILKVMPR 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT++  +  L +   +D V+V ++S+ +    +    + +    ++  +V++
Sbjct: 230 ERRTFLFSATMTKKVKKLERASLRDPVKVEVSSKYQTVEKLLQYYLFIPARYKNVYLVHV 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FCST  +  R   +L       V L G+++Q +R  AL   +    ++ 
Sbjct: 290 LNELAGNSFMIFCSTCNNTVRTALMLRALGLAAVPLHGQMTQNKRLAALNKFKSQARQIL 349

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TDVA+RG+D+P +++V++ ++  + ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 350 ISTDVASRGLDIPHVDVVLNLDIPMHSKDYIHRVGRTARAGRAGQAITFVTQYDVELYQR 409

Query: 359 LFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEK 415
           +       +        E  A++ER A+      +    I+  +  K         D E 
Sbjct: 410 IEHLLGKKLPEYKCEQDEVMALQERVAEAHRTARIEQRDIEERKASKGGKRGANDSDEED 469


>gi|7385089|gb|AAF61690.1|AF220365_1 nucleolar RNA helicase II/Gu [Mus musculus]
 gi|148700138|gb|EDL32085.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_a [Mus
           musculus]
          Length = 805

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 241/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 214 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 273

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 274 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 331

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 332 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 391

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 392 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 451

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 452 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 510

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 511 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 570

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 571 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 627

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 628 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 685

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 686 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRRW 729

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 730 QLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 770


>gi|307203141|gb|EFN82321.1| ATP-dependent RNA helicase p62 [Harpegnathos saltator]
          Length = 410

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 181/365 (49%), Gaps = 10/365 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +++ G+   T++Q       +   +++   QTGSGKT+ + L     + A+ +R +    
Sbjct: 5   INKFGFQEPTAIQAQGWPIAMSGYNMVGIGQTGSGKTLGYILPAIVHINAQ-ERLNHGDG 63

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+AL +APTRELA Q+        + + V      GG     + RDL+ G  I + TPGR
Sbjct: 64  PIALILAPTRELAQQIQSVTTDFGSLSYVRSTCIFGGAPRGGQARDLRRGVEICIATPGR 123

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +     N+     +VLDEAD MLD+GF   I  I++     R++LM+SAT    + 
Sbjct: 124 LIDFLEQGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVR 183

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RDNAIVNILRYHGAKNAI 248
           TLAK Y K+ V++NI S     +    + V V          +            +   I
Sbjct: 184 TLAKEYLKNYVQLNIGSLTLAANHDILQIVEVCEEYEKEAKLKTLLENIHDANEDSSKII 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F  T+  V   T+ +    +  V + G+ SQ ER   L+  R+ ++ + +ATDVAARG+
Sbjct: 244 IFVETKKKVESITRSIRRFGWPAVCIHGDKSQHERDFVLREFRNKKSSILVATDVAARGL 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANV 365
           D+ D++ VI+ +  S+ E+ +HR GRTGR+G  G S  +      R+A  L    +EA  
Sbjct: 304 DVDDVKYVINFDYPSSSEDYIHRIGRTGRSGNTGTSYALFTPQNARQARDLINVLKEAKQ 363

Query: 366 SVVWE 370
            V  +
Sbjct: 364 EVNPQ 368


>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 809

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 145/576 (25%), Positives = 249/576 (43%), Gaps = 35/576 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A +  GY   T +Q A++   L  +D+   A TGSGKT AF L L   +L  
Sbjct: 184 NLSRQLIRACTALGYDVPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPLLERMLHR 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A+  L L   PTRELAVQV +    L   T +  A+ +GG+S + +  +L+   
Sbjct: 244 GARAAAATHVLVL--VPTRELAVQVHQMTMRLAQFTSIRAALVVGGLSANTQAAELRTRP 301

Query: 126 HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGRL DH+R         L A+VLDEAD +L++GF ++I  I+   P +R+ ++
Sbjct: 302 EIVVATPGRLIDHVRNTHSVGLEDLAALVLDEADRLLEMGFLEEIREIVRHCPTRRQTML 361

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++  +  LA+   K   R++          +    + +     S ++  ++ ++  
Sbjct: 362 FSATLTSGVQELAEFSMKHPARLSADQIGTTPGTLTEEVLRLRPGAASMKEAHLMALVNR 421

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K +IVF  T+    R   V+         L G+LSQ +R  AL+  R G A   +AT
Sbjct: 422 TFTKKSIVFSRTKQQAHRLKIVMGLAGIVAAELHGDLSQTQRLAALESFRVGEASHLVAT 481

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI  +      + LHR GRT RAG++G ++  + ++ ++  + + +
Sbjct: 482 DVAARGLDIAGVDAVISYDAPRTLASYLHRVGRTARAGKRGTALTFMEESDRKLVKAVSK 541

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +V    P+   + E    +I  + +     + + ++  +  L + + E I A  L
Sbjct: 542 R-GSKLVARSLPN--HVVEEWHAKI--EAMADQIKEVEYEERAEKHLNRAEMEAIKAENL 596

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
             H   + A    T       +      S          D  +         G K K   
Sbjct: 597 MTHSKEIHARPAKTWFQSERQKKTLNKAS-LKASEREDVDELEDVEKVKRETGKKSKKTK 655

Query: 482 RWLMPMLCR----SSGINRQSIGAIRVQPDLTFV-----EVSA--------------DGV 518
           R       +         R+++   +++     +     E+S                 V
Sbjct: 656 RAEKEAAEKVKLPEGKRARRALAEGKIREKEKRMWGGDDELSEQMMSKRAGKTMGGVKSV 715

Query: 519 DLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSK 554
             L R  +L  G+  K L   K +    +    ++K
Sbjct: 716 KRLEREARLTGGVATKVLKAFKKEVAKGRKKPKRAK 751


>gi|332028992|gb|EGI69006.1| ATP-dependent RNA helicase vasa [Acromyrmex echinatior]
          Length = 795

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 179/386 (46%), Gaps = 18/386 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   +  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 285 IQSFDQSGLRTILLENIKKSGYTKPTPVQKYAIPIIMNGQDLMACAQTGSGKTAAFVVPI 344

Query: 59  ASTLLAEND---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             TLL +     + S +  P  + I+PTREL  Q+ ++++     + +   +  GG SV 
Sbjct: 345 LHTLLEDPKDLIKTSTSCEPHVIIISPTRELTSQIHQQVKKFSLGSIIRAELAYGGTSVM 404

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   + NG HI+V TPGRL D I    + +S L+ +VLDEAD MLD+GF  DIE ++D 
Sbjct: 405 HQSNRVLNGCHILVATPGRLLDFIGRGKIRLSSLRFLVLDEADRMLDMGFLPDIEKLIDH 464

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-------SENRQHSDIDYRAVLVAL 228
                     +   S       +      +R  +                  Y+A   + 
Sbjct: 465 ETMAPAEERQTLMFSATFPNEIQELASRFLRNYLFLAVGIVGGACADVEQNFYQASGQSE 524

Query: 229 SDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             +    +   ++     +  +VF   +         L+E  F   ++ G+  Q+ER  A
Sbjct: 525 KRKLLKELIEKQHQLGNIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEA 584

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   + G+  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +  
Sbjct: 585 LYDFKRGKMLILVATAVAARGLDIKNVSHVINFDLPKTIDEYVHRIGRTGRVGNRGKATS 644

Query: 347 VIPQN----MQRRAERLFREANVSVV 368
               +    +     ++ ++A+  V 
Sbjct: 645 FFDSSTDMPLTDDLVKILKQASQPVP 670


>gi|315612843|ref|ZP_07887754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314953|gb|EFU62994.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis ATCC 49296]
          Length = 447

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +  
Sbjct: 3   FKKFQ-FKNYIVEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D      +  A+  AP+RELA Q+ +    + A + V V V           + 
Sbjct: 62  QLDETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S P
Sbjct: 116 EKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVIDEADMTLDMGFLETVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  
Sbjct: 176 KDLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L     +V  + G+++ +ER   +  +++     
Sbjct: 236 LTQLMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIL 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             ++++D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGIKFIP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R ++RA          
Sbjct: 400 LVKKKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|300741894|ref|ZP_07071915.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
 gi|300381079|gb|EFJ77641.1| ATP-dependent RNA helicase DeaD [Rothia dentocariosa M567]
          Length = 582

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +    Q I +AL+  G V+   +QE  L   L   D++  A+TG+GKT+ FGL   
Sbjct: 23  KSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTI 82

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D          AP AL + PTRELA+QVG +L          VA   GGV   
Sbjct: 83  QRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYE 142

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L  G  +VVGTPGRL D  +   L ++ +K VVLDEADEMLDLGF   +E I+  
Sbjct: 143 PQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGY 202

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRD 232
            P  R+ ++FSAT+   + T+A+ Y    + +   +     +  + I      V   D+D
Sbjct: 203 LPTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKD 262

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  ILR HG    ++F  T+   +R    L    F    L G+L+Q  R  AL+  R+
Sbjct: 263 EMLGRILRAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + +ATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V  +    
Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382

Query: 353 QRRAERLFREA 363
             R  RL  +A
Sbjct: 383 IAR-WRLINDA 392


>gi|311111789|ref|YP_003983011.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943283|gb|ADP39577.1| DEAD-box RNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 580

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +    Q I +AL+  G V+   +QE  L   L   D++  A+TG+GKT+ FGL   
Sbjct: 23  KSFADFGVRQDISDALAAVGIVSPFPIQEMTLPVALAGHDIIGQAKTGTGKTLGFGLPTI 82

Query: 60  STLLAEND----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D          AP AL + PTRELA+QVG +L          VA   GGV   
Sbjct: 83  QRVVGRDDDQWGSLQKPGAPQALILVPTRELAIQVGNDLAVASKLRNARVATLYGGVPYE 142

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L  G  +VVGTPGRL D  +   L ++ +K VVLDEADEMLDLGF   +E I+  
Sbjct: 143 PQVEQLTKGLEVVVGTPGRLIDLYQHGALTLTQVKTVVLDEADEMLDLGFLPSVEKIMGY 202

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRD 232
            P  R+ ++FSAT+   + T+A+ Y    + +   +     +  + I      V   D+D
Sbjct: 203 LPTDRQTMLFSATMPGPVITMARKYMTKPMHISAADPEDHAKTKASIRQVVYRVHHMDKD 262

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  ILR HG    ++F  T+   +R    L    F    L G+L+Q  R  AL+  R+
Sbjct: 263 EMLGRILRAHGRGRTVIFTKTKRDAARVADELIARGFAAAPLHGDLNQGAREQALRAFRN 322

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + +ATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V  +    
Sbjct: 323 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGHEGTAVTFVDWED 382

Query: 353 QRRAERLFREA 363
             R  RL  +A
Sbjct: 383 IAR-WRLINDA 392


>gi|268592936|ref|ZP_06127157.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
 gi|291311728|gb|EFE52181.1| ATP-dependent RNA helicase RhlB [Providencia rettgeri DSM 1131]
          Length = 428

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 186/372 (50%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTF 68

Query: 60  STLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL         A+ P AL +APTRELAVQ+  + + L   TG+ + +  GG     + 
Sbjct: 69  HYLLTHPAIEGKKANQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQNG  I++GT GRL D+ +   +++S ++ VVLDEAD M DLGF  DI +I    P 
Sbjct: 129 KVLQNGVDILIGTTGRLIDYAKQGHVDLSAVQVVVLDEADRMYDLGFIKDIRWIFRRMPG 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               L   FSAT+S  +  LA     +   V +    +    I       +  ++   + 
Sbjct: 189 AAERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHLD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNL 368

Query: 357 ERLFREANVSVV 368
             +      S+ 
Sbjct: 369 PAIEEYIQHSIP 380


>gi|223056271|gb|ACM80368.1| vasa [Lytechinus variegatus]
          Length = 679

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 195/383 (50%), Gaps = 14/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   + + + E + +  Y   T VQ+  +       D++  AQTGSGKT AF L +
Sbjct: 229 IRSFEEAGLDETVLENVRKARYAKPTPVQKYAIPIIGAGLDLMACAQTGSGKTAAFLLPI 288

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++ ++     FS    PLAL ++PTRELA Q+  E       T +   V  GG SV 
Sbjct: 289 ITNMITQSGCVSCFSVVQEPLALIVSPTRELASQIQNEARKFCRNTSLRPVVIYGGTSVS 348

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R++QNG  I+V TPGR+ D I    + +  LK ++LDEAD M+D+GF  +I+ ++D 
Sbjct: 349 HQTREVQNGCSILVATPGRMHDFIGRGYIGLGKLKYLILDEADRMVDMGFGPEIQKLIDH 408

Query: 176 SPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSD 230
                    + LMFSAT  P I   A+ Y  D + + +       SDI+ R   +     
Sbjct: 409 PHMPPKGERQTLMFSATFPPEIQEKARMYLNDYLFLTVGRVGGAASDIEQRVLSVKQYEK 468

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R+  +  +   +     +VF  T+ +      +L++  F   ++ G+  QQER  AL+  
Sbjct: 469 REKLMEILRDQNEDDRTLVFVETKRNADFLATLLSQSDFHATSIHGDRQQQEREEALRDF 528

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + GRA V +AT VAARG+D+P ++ V++ +L S+ +  +HR GRTGR G  G S      
Sbjct: 529 KIGRAPVLVATSVAARGLDIPKVKHVVNYDLPSDIDEYVHRIGRTGRVGNTGRSTSFYDA 588

Query: 351 N----MQRRAERLFREANVSVVW 369
           +    + R   ++  +A   V  
Sbjct: 589 DKDVGIARALIKILADACQDVPQ 611


>gi|255565933|ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 564

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 191/373 (51%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  + Q I + ++  GY   T +Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 120 IESFEDMCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPM 179

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
               LA++        PLAL +APTRELA Q+ +E++           A+ +GG ++  +
Sbjct: 180 IQHCLAQSP-IRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQ 238

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  I+V TPGR  DH++    ++S +  +VLDEAD MLD+GF   I  +L + P
Sbjct: 239 RSELRAGVDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLP 298

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++ + L+FSAT+   I TLA+ Y    V+V +   +   +++      V+ S++ + ++ 
Sbjct: 299 ERHQTLLFSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLG 358

Query: 238 ---------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                        H     +VF   +A      + L     + VAL G  SQ ER  AL 
Sbjct: 359 LLVEDASQAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALH 418

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +    
Sbjct: 419 DFRSGSTDILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFY 478

Query: 349 PQNMQRRAERLFR 361
                    ++ +
Sbjct: 479 TDRDLFLVAQIKK 491


>gi|189234356|ref|XP_973872.2| PREDICTED: similar to pitchoune CG6375-PB [Tribolium castaneum]
          Length = 695

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/504 (23%), Positives = 223/504 (44%), Gaps = 29/504 (5%)

Query: 3   IFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            F+++   +     +A+++ G+  LT +Q   + P L  +D++ +A+TGSGKT+AF +  
Sbjct: 129 TFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAFLIPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +F P +    + I+PTREL++Q    L+ L         + +GG S   E 
Sbjct: 189 VELIY--KLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEA 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L  G +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I++  P
Sbjct: 247 QKLSKGINILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLP 306

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           K+R+ ++FSAT +     L     K         + +  + +       V+     R   
Sbjct: 307 KRRQTMLFSATQTKKTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLV 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++       V+ + G+  Q +R+       +  
Sbjct: 367 LFTFLKKNRKKKVMVFFSSCMSVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAE 426

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQ 353
           + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++     
Sbjct: 427 SGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 486

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  ++A V +        + A  +   + ++    FL+      K+     +  +D
Sbjct: 487 GFL-RYLKQAKVPLNEFEFSWNKIADIQLQLENLIGKNYFLN---MSAKEAFKAYVRAYD 542

Query: 413 PEKIAAGF----LRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFK 464
              +   F    L + + GL    ++ P       V   +R          G     N  
Sbjct: 543 SHHLKTIFDISTLDLAKVGLSFGFKVPPAVDLKVTVKKSERPSKRKGGGGFGYYKNLNAM 602

Query: 465 GSSWFSLSV-----GSKQKAEARW 483
            S  +  +V       K  ++ R 
Sbjct: 603 PSKDYKKNVVYRQPKRKGGSDKRH 626


>gi|149187436|ref|ZP_01865734.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838972|gb|EDL55911.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 442

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 178/380 (46%), Gaps = 6/380 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  +   + + LS   +   T +Q+  +   +  KD+L S++TGSGKT+AF L + 
Sbjct: 1   MQFKELGLDNRLLKNLSHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              L    +   A  P A+ +APTRELA QV  EL+ +         + +GG + + + +
Sbjct: 61  HKAL--KSKAFSARDPRAVILAPTRELAKQVYGELKSMLGGLSYDATLILGGENFNDQVK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SS 176
            L+     +V TPGRL DH+  + L +  L  ++LDEAD MLDLGF  ++  I +     
Sbjct: 119 ALRRYPKFIVATPGRLADHLEHRSLFLDGLDTLILDEADRMLDLGFAPELRRIHNAAKHR 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   +      A+            S            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHAEVNDIAAEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILE 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     K  I+F +TR    R TK L E   + VALSG L+Q +R+  +        +
Sbjct: 239 RILEQAEYKQVIIFTATRVDTERLTKWLNEKKLKAVALSGNLNQTQRNAIMSQFERHVFK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RGID+  +  VI+ ++  + E  +HR GRTGRAG KG +V ++        
Sbjct: 299 ILVTTDVASRGIDIASVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSF 358

Query: 357 ERLFREANVSVVWEPAPSVE 376
           +R+       + +     ++
Sbjct: 359 KRVEAFLQQDLTFSELEGLK 378


>gi|293365070|ref|ZP_06611787.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307702221|ref|ZP_07639181.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
 gi|291316520|gb|EFE56956.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           oralis ATCC 35037]
 gi|307624234|gb|EFO03211.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
           35037]
          Length = 447

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 201/465 (43%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +  
Sbjct: 3   FKKFQ-FKNYIAEALEELKFSTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D      +  A+  AP+RELA Q+ +    + A + V V V           + 
Sbjct: 62  QLDETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S P
Sbjct: 116 EKLASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  
Sbjct: 176 KDLQFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L     +V  + G+++ +ER   +  +++     
Sbjct: 236 LTQAMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             ++++D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R ++RA          
Sbjct: 400 LVKKKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|195379282|ref|XP_002048409.1| GJ13954 [Drosophila virilis]
 gi|194155567|gb|EDW70751.1| GJ13954 [Drosophila virilis]
          Length = 605

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 157/405 (38%), Gaps = 18/405 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + E L   G+   T +Q   L   L  + ++  A TGSGKT+AF   + + L 
Sbjct: 130 FKLLPR-LQENLLSYGFAQPTPIQMQALPVLLNNRALMACAPTGSGKTLAFLTPIINGL- 187

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    +   AL +APTRELA Q+ RE   L   TG+            ++      
Sbjct: 188 ----RSHKTTGLRALVLAPTRELAQQIYRECAELTRGTGLRTHFISKVSEARQQHGPDCK 243

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +   K +     DE   L       F            
Sbjct: 244 QKYDILISTPNRVRFLLQQQPPLLDFKGIEWFVLDEADRLMEEGQNNFKEQLDEIYAACT 303

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
                ++    T      K A+R              +   +       + + S +  A+
Sbjct: 304 HPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSATDTVQQELLFVGSESGKLLAV 363

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++R       +VF  ++    +  + L      V  +  E +Q +R N ++  R+G  
Sbjct: 364 REMVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHI 423

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +   +  + +HR GRTGRAGR G ++    Q+    
Sbjct: 424 WVLICTELMGRGIDFKGVNLVINYDFPPSTISYIHRIGRTGRAGRPGRAITFFTQDDTAN 483

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            R   ++ + +   V       ++ +R+ +A+   + PL  + I 
Sbjct: 484 LRSIAQIIKNSGGEVPEYML-QMKKVRKSEAKMRAKKPLEREDIS 527


>gi|195128419|ref|XP_002008661.1| GI13618 [Drosophila mojavensis]
 gi|193920270|gb|EDW19137.1| GI13618 [Drosophila mojavensis]
          Length = 595

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 166/440 (37%), Gaps = 24/440 (5%)

Query: 1   MKIFENIP-------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVA 53
           +K+F+++          + E LS  G+   T +Q   L   L+++ ++  A TGSGKT+A
Sbjct: 120 IKLFDDLRTSEYKLLPRLLENLSSYGFAQPTPIQMQALPVLLKDRALMACAPTGSGKTLA 179

Query: 54  FGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           F   + + L          +   AL +APTRELA Q+ RE   L   TG+          
Sbjct: 180 FLTPIINGLRCHKT-----TGLRALVLAPTRELAQQIYRECGELTKGTGLRTHFISKVSE 234

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             ++        + ++ +       +  +   +   K++     DE   L       F  
Sbjct: 235 AKQQYGPECKQKYDILISTPNRVRFLLQQQPPLLDFKSIEWLVLDEADRLMEEGQNNFKE 294

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVL 225
                          ++    T      K A+R              +   +       +
Sbjct: 295 QLDDIYAACTNPQKRVAFFSATYTVPVAKWALRHLKNLVRVTIGVQNSATDTVKQELLFV 354

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
            + S +  A+  ++R       +VF  ++    +  + L      V  +  E +Q +R N
Sbjct: 355 GSESGKLLAVREMVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDN 414

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  R+G   V I T++  RGID   + LVI+ +   +  + +HR GRTGRAGR G +V
Sbjct: 415 CVRAFREGHIWVLICTELMGRGIDFKGVNLVINYDFPPSKISYIHRIGRTGRAGRPGRAV 474

Query: 346 FVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
               Q+     R   ++ + +   V       ++ + + +A+   + PL  + I    + 
Sbjct: 475 TFFTQDDTANLRSIAQIIKNSGGEVPEYML-QMKKVSKSEAKMRSKKPLDREDITTKIRP 533

Query: 403 MVDVLLAKHDPEKIAAGFLR 422
                  K      A   L+
Sbjct: 534 ETPKNSVKLQKIDKAEKVLK 553


>gi|145511916|ref|XP_001441880.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409141|emb|CAK74483.1| unnamed protein product [Paramecium tetraurelia]
          Length = 604

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 31/394 (7%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+    PQ++ + L + G+   T++Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 135 FEDVQCFPQMLMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPAIV 194

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+     P      L +APTREL +Q+  + +     + +  A   GG   + ++  
Sbjct: 195 HILAQARSHDPK----CLILAPTRELTLQIYDQFQKFSVGSQLYAACLYGGQDRYIQKSQ 250

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I++  PGRL D +      +  +  +VLDEAD MLD+GF   I  I+D    +R
Sbjct: 251 LRKGPQILIACPGRLIDLLDQGCTTLKQVSFLVLDEADRMLDMGFEPQIRKIVDQIRPQR 310

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAI--- 235
           + ++FSAT    +  LA ++ K               +  I     ++   D++      
Sbjct: 311 QTMLFSATWPKEVQKLALDFCKQEPVHIQIGNVELTSNRMIKQIVYVMKAIDKNQRYNQT 370

Query: 236 ---------------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                          + +L+    K  ++FCST+    +  K L     + +AL G+  Q
Sbjct: 371 IDGANIYTRSSISLLLYLLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQ 430

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            ER   +   R+GR+   IATDVA+RG+D+ D+E+V++ ++    E+ +HR GRTGRAG 
Sbjct: 431 TERDYVMSHFRNGRSTALIATDVASRGLDIKDIEVVVNYDMPKVIEDYVHRIGRTGRAGA 490

Query: 341 KGMSVFVIPQNMQ----RRAERLFREANVSVVWE 370
            G S+     +      +    + RE+   + +E
Sbjct: 491 IGQSISFFASDEDVRMAKDLVEILRESQNDIPYE 524


>gi|308178316|ref|YP_003917722.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745779|emb|CBT76751.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 515

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/467 (28%), Positives = 212/467 (45%), Gaps = 12/467 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + L++ G  +   +QEA L   L   DVL   QTGSGKT+AF L L + L    
Sbjct: 10  VPEYLAKVLADSGIESAFPIQEATLPSTLAGGDVLGRGQTGSGKTLAFSLPLVARLADRP 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P AL +APTRELA Q+ + +E L    G+   V  GGV+  R+ + +  GA 
Sbjct: 70  QR-RKARFPRALIMAPTRELATQIAKTVEPLAKAAGLRTTVIYGGVAQSRQEKAMNEGAD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+  PGRL D I+ K +++S L+  VLDEAD M D+GF   +  I+D  P   + ++FS
Sbjct: 129 IVIACPGRLDDLIKQKIVDLSQLEISVLDEADHMADMGFLPVVRRIMDRMPTGIQHMLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  +AK Y       ++ +     + +++   +++  D+ +  +  +   G   
Sbjct: 189 ATLDNGVDKVAKRYLSHPTIHSVDAPKAAVNTMEHHVFVISNDDKKD--LIRVLAQGTAR 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    +    L++     V L G LSQ  R   L     G A+V +ATDVAAR
Sbjct: 247 RIMFMRTKHHAKKMALTLSKAGVPAVDLHGNLSQNARDRNLAAFASGEAKVLVATDVAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ +  +ELV+H +  +  +   HRSGRT RAG  G  V +   + Q     L ++A + 
Sbjct: 307 GVHVDGVELVVHVDPPAEHKAYTHRSGRTARAGSDGTVVTICTPDQQGDVSTLLKQAGLK 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           V +E       +  +    + +   ++   Q            +    +   G  R  R 
Sbjct: 367 VPFEKVNLNSPVVAKVVGEVAELVPYVAPAQQTRNPAKKKPAGESSNARGGRGGARNARG 426

Query: 427 GLCAPEEITPVSLVSGR---------DRFRDDSRAFKVGGGSRDNFK 464
           G  A E                    +R   +SR       SR    
Sbjct: 427 GKPAGEAQGRGGDRRRSDRSGASNHSERPARESRGANAERPSRSARG 473


>gi|317152754|ref|YP_004120802.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943005|gb|ADU62056.1| DEAD/DEAH box helicase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 681

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 227/467 (48%), Gaps = 11/467 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            FE +P  + +A    G+  L  VQ+  +   L ++DV+V A+TGSGKT AF L L   L
Sbjct: 24  TFEALPDKLRKACDRAGWTKLMPVQQKAMPFLLEDRDVMVQARTGSGKTGAFVLPLLQKL 83

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A   +        AL + PTRELA QV  E   L  + G+ V    GGV    +    +
Sbjct: 84  DANLPQ------CQALVMVPTRELARQVADEALMLSGEEGIGVVAVYGGVGYKEQLDAFR 137

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKRR 181
           +GA +VVGTPGR+ DH+  + L + HLK ++ DEAD ML +GF  D +E         R 
Sbjct: 138 DGAQLVVGTPGRILDHLVRRNLTLDHLKTLIFDEADRMLSVGFYPDMVEVKRYLPRTLRG 197

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT   ++  LA+ +      ++++S+    S I ++ V VA   ++  ++ ++  
Sbjct: 198 AYMFSATFPQSVLRLAEEFMDKPEFLSLSSDEANISSIAHQFVEVAAMGKERKLIKLIEL 257

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               +A++F +T+ +V     +L++  F    L+ +L+Q +R + +  +++G+ R  +AT
Sbjct: 258 ENPTSALIFSNTKRNVEFTAALLSQFGFDAEGLTSDLTQGKRESLMARIKEGKLRFLVAT 317

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+P+L  V   E   +PE+ +HR+GRTGRAG  G ++ ++    +   ER+  
Sbjct: 318 DVAARGIDIPELSHVFMLEPPEDPESYVHRAGRTGRAGATGTAITLVDVIQRMELERIAT 377

Query: 362 EANVSVVWEPAPS---VEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIA 417
             ++       P+   V AI E     +L+     L +++ +       L  K+   + +
Sbjct: 378 RFSIQFEEIKDPTEQDVAAIIEERLTALLEKKFRKLTNLERERASRFLSLARKYADNEES 437

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            G L +    L         +           +R   V      + K
Sbjct: 438 LGLLAMQLDELYQHTLHGKPAAEPAPRTQPAPARERSVSRDEERSPK 484


>gi|282866591|ref|ZP_06275633.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282558493|gb|EFB64053.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 537

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 181/366 (49%), Gaps = 10/366 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           EAL   G  +   +QE  L   L   DV+  A+TG+GKT+ FGL L   +      E  R
Sbjct: 32  EALEAVGITSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 91

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +P     AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 92  ATPDRLTDAPQALIVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGV 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D    + L++SH++ +VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 152 DVVVGTPGRLLDLAGQRKLDLSHIRVLVLDEADEMLDLGFLPDVERIITMLPAKRQTMLF 211

Query: 186 SATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+     ++     +        +   E     +           D+   +  IL+  
Sbjct: 212 SATMPGAVISLARRYMSQPTHINATSPDDEGTTVKNTTQFVYRAHSMDKPEMVSRILQAE 271

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++FC T+ + +   + L    F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 272 SRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 331

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++  +   R + + + 
Sbjct: 332 VAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRWQLINKA 391

Query: 363 ANVSVV 368
             ++  
Sbjct: 392 LGLNFP 397


>gi|82544201|ref|YP_408148.1| ATP-dependent RNA helicase DbpA [Shigella boydii Sb227]
 gi|81245612|gb|ABB66320.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|320174309|gb|EFW49464.1| ATP-dependent RNA helicase DbpA [Shigella dysenteriae CDC 74-1112]
 gi|332094952|gb|EGI99992.1| ATP-independent RNA helicase dbpA [Shigella boydii 3594-74]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|74312285|ref|YP_310704.1| ATP-dependent RNA helicase DbpA [Shigella sonnei Ss046]
 gi|73855762|gb|AAZ88469.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|323168225|gb|EFZ53911.1| ATP-independent RNA helicase dbpA [Shigella sonnei 53G]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|117921821|ref|YP_871013.1| ATP-dependent RNA helicase DbpA [Shewanella sp. ANA-3]
 gi|117614153|gb|ABK49607.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 479

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 199/370 (53%), Gaps = 7/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 29  LKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 89  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+F
Sbjct: 143 HIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 202

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     +
Sbjct: 203 SATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPE 262

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 263 SAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAA 322

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 323 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLER 382

Query: 366 SVVWEPAPSV 375
            +  E  PS+
Sbjct: 383 DIQSEALPSL 392



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+  N        +  G K+K     ++  L   +GI    +G I V     +V V+   
Sbjct: 396 GTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKV 455

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 456 AKKALSKITSGR 467


>gi|320163352|gb|EFW40251.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1073

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 114/432 (26%), Positives = 203/432 (46%), Gaps = 10/432 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            +  +   T +Q   +   +  +D++  A+TGSGKT+AF L +   +LA+    S    P
Sbjct: 386 DKCKFEKPTPIQAQAVPAVMSGRDLIAIAKTGSGKTLAFVLPMIRHILAQPP-LSADDGP 444

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
           + L + PTRELAVQ   E +   A   +      GG ++  +  DL+ GA I+V TPGR+
Sbjct: 445 IGLILTPTRELAVQTYTECKRFAAPNQLRTVCLYGGSAITEQIADLKRGAEIIVCTPGRM 504

Query: 136 CDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
            D      G+  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSAT   +
Sbjct: 505 IDMLTANSGRVTNLRRVTYLVLDEADRMFDMGFEPQVMRIVNNIRPARQTVLFSATFPRS 564

Query: 193 ITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-NAIVF 250
           + TLA      +  ++ +   +    +ID   +++  +++   ++ +L     + + IVF
Sbjct: 565 METLAYKILHHSPLQIIVGGRSIVSKEIDQHVLVIPEAEKYLRLLELLGVWQEEGSVIVF 624

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
              + +     K L    +  ++L   L Q +R   L   + G  R+ IAT VAARG+D+
Sbjct: 625 VERQEAADMLLKSLYASGYPCLSLHAGLDQGDREETLIAFKAGDVRLLIATSVAARGLDV 684

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            +L+LV++ +  ++ E+ +HR GRTGRAGRKG S   +     R A  +     +S    
Sbjct: 685 KELKLVVNYDAPNHYEDYVHRVGRTGRAGRKGTSYTFLTPEQGRFAGDILNALQLSGANV 744

Query: 371 PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCA 430
           P   ++ ++E+    +             + K       +++    A     + +A +  
Sbjct: 745 P-EELKQLKEQYEADVKSGKAKGGKFSVRKGKGFGFTDEENNK---ANALKNMQKAAMGL 800

Query: 431 PEEITPVSLVSG 442
            E     S  S 
Sbjct: 801 GESDDEDSGPSA 812


>gi|331646674|ref|ZP_08347777.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
 gi|330911207|gb|EGH39717.1| ATP-dependent RNA helicase DbpA [Escherichia coli AA86]
 gi|331045426|gb|EGI17553.1| ATP-independent RNA helicase DbpA [Escherichia coli M605]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|193066966|ref|ZP_03047935.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
 gi|192959556|gb|EDV89990.1| ATP-independent RNA helicase DbpA [Escherichia coli E110019]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEAHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEAHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKSKMRPGDVLGALTGDIGLDGVDIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|148997163|ref|ZP_01824817.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575420|ref|ZP_02721356.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|307067364|ref|YP_003876330.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
 gi|147756863|gb|EDK63903.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578611|gb|EDT99139.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           MLV-016]
 gi|306408901|gb|ADM84328.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           AP200]
          Length = 447

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LEIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|322834951|ref|YP_004214978.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321170152|gb|ADW75851.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 430

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +  EAL ++G+   T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPLAVEALEKKGFHYCTPIQALALPITLAGRDVAGQAQTGTGKTLAFLASTFHYLLSHP 75

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AAEGRQTNQPRALIMAPTRELAVQIHSDAEALSESTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHIDLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + I  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFENMNNAESIEIEPEQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         LA    +V  L+G++ Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLEDFTKGTLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSISLACEEYALNLPAIETYT 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|256088516|ref|XP_002580378.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665945|emb|CAZ36617.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 959

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 183/372 (49%), Gaps = 9/372 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + I + + E+G+ + + +QE+ +   L  +D++  A+ G+GKT A+ + + 
Sbjct: 551 SSFEDFCLKRDILKGIYEKGWESPSPIQESSIPIALTHRDIMARAKNGTGKTGAYSVPVL 610

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++    ++        A+ + PTRELA+Q  +    L   T + + + IGG  +  +  
Sbjct: 611 ESIDTTINKI------QAIILVPTRELALQTSQICIELAKHTAIKIMLVIGGTLLKDDLI 664

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H+++GTPGRL D +    ++IS  K VVLDEAD++L       +E IL+   K 
Sbjct: 665 RLSQTVHVLIGTPGRLVDLLSRGLIDISKCKIVVLDEADKLLSEELISGVEEILNGVDKS 724

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L++SAT    + +    + ++  ++N+          +Y A +     + + +  + 
Sbjct: 725 RQVLVYSATYPVTVQSFMNQHLRNPYQINLMETLTLKGITEYYAYVQ-EKHKVHCLNTLF 783

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FCS+   V    K + +  +    +   +SQQ+R+      R+G  R  +
Sbjct: 784 SKLQISQSIIFCSSAQRVELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLV 843

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+  RGID+P + +VI+ +     E  LHR GR+GR G  G+++ ++    +   + +
Sbjct: 844 CTDLLTRGIDIPTVNVVINFDFPKYSETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTV 903

Query: 360 FREANVSVVWEP 371
             E    +   P
Sbjct: 904 ETELVTEIKPIP 915


>gi|226306587|ref|YP_002766547.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229493625|ref|ZP_04387410.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
 gi|226185704|dbj|BAH33808.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|229319586|gb|EEN85422.1| ATP-dependent RNA helicase RhlE [Rhodococcus erythropolis SK121]
          Length = 500

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 214/466 (45%), Gaps = 12/466 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP V+  AL   G      +Q A +   L  +DVL    TGSGKT+AFGL +   L    
Sbjct: 22  IPAVMVHALRRSGIDAPFPIQSATIPDVLAGRDVLGRGATGSGKTLAFGLPMLVRL---K 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  + P  L +APTRELA+Q+ + L+    + G+ VA  +GGV + R+   L  G  
Sbjct: 79  GGASKRNRPRGLVLAPTRELAIQIHKALDDAATEIGLRVANAVGGVPIKRQADILARGVD 138

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +  K + +  +    +DEAD M D+GF D++  ILD++PK  + L+FS
Sbjct: 139 LLIATPGRLLDLLEQKSVILDDVVITTIDEADHMADMGFIDEVAKILDTTPKDGQRLLFS 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y ++    + A      S +++  + V   D+ +  V       A  
Sbjct: 199 ATLDGKVDDLVAGYLRNPASHSTAPPVATVSTMEHHLLFVDRDDKRS--VVAHIASRAGR 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V R  + L        AL G  +Q  R+  L    DG   V +ATDVAAR
Sbjct: 257 TIMFVKTKHGVDRLAQQLHLIGVSAGALHGGKTQNNRTKTLASFSDGTTPVLVATDVAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +  +  ++ LHR+GRT RAG  G+ V ++    +   E+L ++A + 
Sbjct: 317 GIHVDDVTLVVHVDPPAEAKDYLHRAGRTARAGESGVVVTIVTDEERDSVEKLTKQAGIK 376

Query: 367 V--VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
           V  V      +E  R   A      P+         K        +HD     A   R+ 
Sbjct: 377 VHGVRVRPDDLELTRITGAMEPTGIPVEAPDTTVAVKHTAKRGRQEHDTAGRTAAGGRMK 436

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDD-----SRAFKVGGGSRDNFKG 465
           + G         V+      + R D     +R+ ++        +G
Sbjct: 437 KDGDKRAASSRRVTDPKSVKKIRADGTPVPTRSERLASKGLTPRRG 482


>gi|156843946|ref|XP_001645038.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380640|sp|A7TKR8|DED1_VANPO RecName: Full=ATP-dependent RNA helicase DED1
 gi|156115693|gb|EDO17180.1| hypothetical protein Kpol_1072p50 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 650

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 191/379 (50%), Gaps = 16/379 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ E +    +   T VQ+  +    R +D++  AQTGSGKT  F   + S      
Sbjct: 167 LDALLLENIILARFTKPTPVQKYSVPIVSRGRDLMACAQTGSGKTGGFLFPVLSESFKNG 226

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P SA         P AL +APTRELA Q+  E +    ++ V   V  GG  +  +
Sbjct: 227 PSPMPESARKSFVKKAYPTALVLAPTRELATQIYDEAKKFTYRSWVRPTVVYGGSDIGSQ 286

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            RDL  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I+D   
Sbjct: 287 IRDLSRGCDLLVATPGRLSDLLERGRVSLANVKYLVLDEADRMLDMGFEPQIRQIVDGCD 346

Query: 178 KKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                  + LMFSAT    I  LA+++  D + +++        +I  R + V   D+ +
Sbjct: 347 MPPVGERQTLMFSATFPDDIQHLARDFLSDYIFLSVGKVGSTSENITQRILYVEDMDKKS 406

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L        ++F  T+      T  L    F+  A+ G+ +Q ER  AL   ++G
Sbjct: 407 TLLDLLSASNDGLTLIFVETKRMADELTDFLIMQDFRATAIHGDRTQSERERALAAFKNG 466

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
            A + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G++        +
Sbjct: 467 NANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNTGVATAFFNRGNR 526

Query: 351 NMQRRAERLFREANVSVVW 369
           N+ +    L  EAN  +  
Sbjct: 527 NIVKGMYELLAEANQEIPP 545


>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 468

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 179/375 (47%), Gaps = 5/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + ++L   G    T +QE  L   L  KD++ S++TGSGKT+AF L     ++  
Sbjct: 18  SLDKRLLDSLKHLGITTPTPIQEQALPIALTGKDLMASSKTGSGKTLAFLLPAMQRII-- 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 76  STKALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKALSREP 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSSPKKRRM 182
           H +V TPGR+ DH++ + L+++ L+ ++LDEAD MLDLGF      I    D   ++  M
Sbjct: 136 HFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQTLM 195

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +          A   +        A+            ++  L  +   + ++L   
Sbjct: 196 FSATLEHDEINEIAATLLKSPNHIAIGAAYTEHADITQRIILVDHLDHKQALLEHVLTNE 255

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R   +LA+  F   ALSG L+Q  R+  +     G+ ++ + TD
Sbjct: 256 TNKQIIIFTATRVDTERLASLLADKGFATAALSGNLNQGARNQIMDQFARGQKQILVTTD 315

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG +V ++         ++   
Sbjct: 316 VASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWDSFIKVQAF 375

Query: 363 ANVSVVWEPAPSVEA 377
              +  +     ++A
Sbjct: 376 LRKTFEFTVIDGLKA 390


>gi|332084705|gb|EGI89893.1| ATP-dependent RNA helicase rhlB [Shigella boydii 5216-82]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
 gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
          Length = 397

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 191/376 (50%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+ E GY   T++Q   +   L+  +++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSQPLLDAIKEVGYQKPTTIQTKAIPIVLKGSNLIAAAQTGTGKTASFVLPILERL--SA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        A+ + PTRELA+QV + +E     T +      GGV    +++ L +G  
Sbjct: 66  GQTERKKRARAIILTPTRELALQVNQSIEAYAQFTSIKSMAMFGGVDYAPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + ++   ++ +VLDEAD+MLD+GF + I  I+   P+  + L+FS
Sbjct: 126 IVVATPGRLIDLYGQRAIHFDEVETLVLDEADKMLDMGFIEAINKIIARVPEDAQSLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +   + I   +   S+I    V V    + + + ++L+ +  K 
Sbjct: 186 ATLSNPVRDLAKSAIDNPEEIAITKHSASKSNIKQWIVTVDKDMKSSLLSHLLQQNQWKQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     +Q+ R   ++  + G  +  +AT VAAR
Sbjct: 246 ALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLIESFKAGEIQYLVATGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-------MQRRAERL 359
           GID+ +L +VI+ +L    +  +HR GRTGRA   G ++ ++ ++       ++ R   L
Sbjct: 306 GIDIENLPVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCMIESRLGHL 365

Query: 360 FREANVS--VVWEPAP 373
                +   V  +P P
Sbjct: 366 LERVEIEGFVPRKPVP 381


>gi|13542134|ref|NP_111822.1| RNA helicase [Thermoplasma volcanium GSS1]
          Length = 376

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   + E++   GY   T VQ   +   L   D++V ++TGSGKT A+ + +
Sbjct: 4   MKGFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +         +      AL + PTRELAVQV +  E L  ++G+   V  GGVS++++ 
Sbjct: 64  INN-------TAKEKGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  GA+I+VGTPGR  D I    LN   +   VLDEADEMLD+GF +DI+ I++  P 
Sbjct: 117 ELILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPV 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSATI   I  LAK +  +   + ++ +    + ID+   +     +   + + 
Sbjct: 177 ERQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAVSRRERKLRTLFSY 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  + +I+F  T+A  +   + L  H    V + G+L+Q +R  AL        R  
Sbjct: 237 IDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRF-KNFGRFL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D+  +  +I+ ++  +P   +HR GRT R G  G +  ++        + 
Sbjct: 296 VATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSIDM 355

Query: 359 LFREANVSVVW 369
           +  EA V +  
Sbjct: 356 IRHEARVKMKE 366


>gi|14325565|dbj|BAB60468.1| ATP-dependent RNA helicase [Thermoplasma volcanium GSS1]
          Length = 373

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 192/371 (51%), Gaps = 10/371 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+   + E++   GY   T VQ   +   L   D++V ++TGSGKT A+ + +
Sbjct: 1   MKGFEEFNLRNELIESIRGTGYSEPTEVQSMAIPIALAGSDLVVRSKTGSGKTAAYLIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +         +      AL + PTRELAVQV +  E L  ++G+   V  GGVS++++ 
Sbjct: 61  INN-------TAKEKGIRALILLPTRELAVQVAKVSEALGKRSGIRTVVVYGGVSINKQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +  GA+I+VGTPGR  D I    LN   +   VLDEADEMLD+GF +DI+ I++  P 
Sbjct: 114 ELILRGANIIVGTPGRTLDLIDRGILNFDKVSYFVLDEADEMLDMGFIEDIKKIINVLPV 173

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+  +FSATI   I  LAK +  +   + ++ +    + ID+   +     +   + + 
Sbjct: 174 ERQSFLFSATIPSEIIELAKGFMHNEEILFLSKDEVTVNGIDHNYAVSRRERKLRTLFSY 233

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  + +I+F  T+A  +   + L  H    V + G+L+Q +R  AL        R  
Sbjct: 234 IDKYKPEKSIIFSRTKAGANMIYEALINHGQDAVIMHGDLTQAQREKALYRF-KNFGRFL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARG+D+  +  +I+ ++  +P   +HR GRT R G  G +  ++        + 
Sbjct: 293 VATNVAARGLDIGGISDIINYDVPDDPRVYVHRVGRTARMGAAGRAFTIVEDREIGSIDM 352

Query: 359 LFREANVSVVW 369
           +  EA V +  
Sbjct: 353 IRHEARVKMKE 363


>gi|297521633|ref|ZP_06940019.1| ATP-dependent RNA helicase DbpA [Escherichia coli OP50]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 204/409 (49%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +     + + W+  P+  +I        L+  +    I G +K  + 
Sbjct: 354 NIISDMLQIKLNWQTPPANSSI------ATLEAEMATLCIDGGKKAKMR 396



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGGIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|161502252|ref|YP_001569364.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863599|gb|ABX20222.1| hypothetical protein SARI_00280 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 444

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAIQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|16129304|ref|NP_415859.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89108191|ref|AP_001971.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160855|ref|YP_001458173.1| ATP-dependent RNA helicase DbpA [Escherichia coli HS]
 gi|170020291|ref|YP_001725245.1| ATP-dependent RNA helicase DbpA [Escherichia coli ATCC 8739]
 gi|170081022|ref|YP_001730342.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188494462|ref|ZP_03001732.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194436972|ref|ZP_03069071.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238900578|ref|YP_002926374.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|253773655|ref|YP_003036486.1| ATP-dependent RNA helicase DbpA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161422|ref|YP_003044530.1| ATP-dependent RNA helicase DbpA [Escherichia coli B str. REL606]
 gi|256022943|ref|ZP_05436808.1| ATP-dependent RNA helicase DbpA [Escherichia sp. 4_1_40B]
 gi|300927858|ref|ZP_07143420.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300948429|ref|ZP_07162531.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300954597|ref|ZP_07167042.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|301022682|ref|ZP_07186535.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301647156|ref|ZP_07246977.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|307137985|ref|ZP_07497341.1| ATP-dependent RNA helicase DbpA [Escherichia coli H736]
 gi|312971541|ref|ZP_07785716.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|331641910|ref|ZP_08343045.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|416881|sp|P21693|DBPA_ECOLI RecName: Full=ATP-independent RNA helicase dbpA
 gi|1742212|dbj|BAA14946.1| ATP-dependent RNA helicase specific for 23S rRNA [Escherichia coli
           str. K12 substr. W3110]
 gi|1787605|gb|AAC74425.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. MG1655]
 gi|157066535|gb|ABV05790.1| ATP-independent RNA helicase DbpA [Escherichia coli HS]
 gi|169755219|gb|ACA77918.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|169888857|gb|ACB02564.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188489661|gb|EDU64764.1| ATP-independent RNA helicase DbpA [Escherichia coli 53638]
 gi|194423955|gb|EDX39943.1| ATP-independent RNA helicase DbpA [Escherichia coli 101-1]
 gi|238860048|gb|ACR62046.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BW2952]
 gi|242377119|emb|CAQ31847.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|253324699|gb|ACT29301.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973323|gb|ACT38994.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           B str. REL606]
 gi|253977536|gb|ACT43206.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           BL21(DE3)]
 gi|260449522|gb|ACX39944.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|299881170|gb|EFI89381.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300318431|gb|EFJ68215.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300452053|gb|EFK15673.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300464143|gb|EFK27636.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|301074642|gb|EFK89448.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|309701644|emb|CBJ00951.1| ATP-independent RNA helicase [Escherichia coli ETEC H10407]
 gi|310336138|gb|EFQ01338.1| ATP-independent RNA helicase dbpA [Escherichia coli 1827-70]
 gi|315135984|dbj|BAJ43143.1| ATP-dependent RNA helicase DbpA [Escherichia coli DH1]
 gi|323937669|gb|EGB33937.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323942290|gb|EGB38461.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323962410|gb|EGB57993.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323973547|gb|EGB68732.1| DEAD/DEAH box helicase [Escherichia coli TA007]
 gi|331038708|gb|EGI10928.1| ATP-independent RNA helicase DbpA [Escherichia coli H736]
 gi|332343042|gb|AEE56376.1| ATP-independent RNA helicase DbpA [Escherichia coli UMNK88]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 204/409 (49%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +     + + W+  P+  +I        L+  +    I G +K  + 
Sbjct: 354 NIISDMLQIKLNWQTPPANSSI------ATLEAEMATLCIDGGKKAKMR 396



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|298706995|emb|CBJ29803.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 402

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 193/375 (51%), Gaps = 9/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +   +   +   G+   ++VQ+  + P    +DV+  +Q+G+GKT  F + +
Sbjct: 28  VENFDSMGLKDELLRGVYAYGFERPSAVQQRAVKPITSGRDVIAQSQSGTGKTAVFSMGI 87

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       + +S   AL ++PTRELA Q  + +  L     V    CIGG S+  + 
Sbjct: 88  LQMLD------TTSSDTQALVLSPTRELAEQTQKVILALGDFMNVQCHACIGGKSIGEDI 141

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  +V GTPGR+ D IR + L   +L+ +V+DEADEML+ GF++ I  I    P 
Sbjct: 142 RRLDYGVQVVSGTPGRVFDMIRRRNLRTRNLQMLVIDEADEMLNKGFKEQIYDIYRYLPP 201

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  + K +    V++ +  +      I    V +     + + + +
Sbjct: 202 STQVVLISATMPQEVLDMTKKFMNMPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 261

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T  + E  F V ++ G++ Q+ER   ++  R GR+RV
Sbjct: 262 LYDTLTVTQAVIFCNTKRKVDWLTAKMREVNFTVSSMHGDMPQKERDAIMEEFRSGRSRV 321

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV  RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 322 LIATDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDVRILR 381

Query: 358 RLFREANVSVVWEPA 372
            + +  +  +   P 
Sbjct: 382 DIEQYYSTQIDEMPM 396


>gi|294632189|ref|ZP_06710749.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292835522|gb|EFF93871.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 473

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS+ G      +Q A L   L+ +DVL   +TGSGKT+AFGL L +     
Sbjct: 34  ELPVEVLRTLSDLGVREPFPIQAATLPDALKGRDVLGRGRTGSGKTLAFGLPLLTR---T 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG S+ R+   L+ GA
Sbjct: 91  AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGTSIGRQVAALRQGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M DLGF   +  +LD      + ++F
Sbjct: 151 EVVVATPGRLHDLIERNACRLGRVGITVLDEADQMCDLGFLPQVADVLDQVHPDGQRMLF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  ++V   DR    V         
Sbjct: 211 SATLDRDVDQLVRRYLHDPVVHSVDPSTGTVTTMEHHVLVVHDPDRYA--VITEIAARDG 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +ATDVAA
Sbjct: 269 RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQITVLVATDVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A +
Sbjct: 329 RGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVSAGRRRETSRMMAGAGI 388

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  +A+
Sbjct: 389 E------PTVTKVRSGEAE 401


>gi|50302969|ref|XP_451422.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607669|sp|Q6CXB7|HAS1_KLULA RecName: Full=ATP-dependent RNA helicase HAS1
 gi|49640553|emb|CAH03010.1| KLLA0A09669p [Kluyveromyces lactis]
          Length = 497

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 211/463 (45%), Gaps = 17/463 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++       +A+ + G+  +T+VQ   + P L  KDVL +A+TGSGKT+AF +    
Sbjct: 35  SFSDLKLSDGTMKAIGKMGFTQMTAVQTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +F P +    + I PTRELA+Q+      L         + IGG +  +E   
Sbjct: 95  ML--HSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEADK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +I++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P +
Sbjct: 153 LMKGVNILIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDEMRQIIKILPNE 212

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R  M  +            ++       + V+   +      ++   V+     R   +
Sbjct: 213 DRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYVVCESDKRFLLL 272

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +   
Sbjct: 273 FSFLKRNQKKKVIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 332

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ +I  +   +P + +HR GRT R  + KG S+  +      
Sbjct: 333 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPTELG 392

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + A V +     P+ + A  +   +++++   +L  I  D  +      A H  
Sbjct: 393 FL-RYLKAAKVPLNEYEFPTNKIANVQAQLEKLIKSNYYLHQIAKDGYRSYLQAYASHSL 451

Query: 414 EKIAA----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451
           + +         ++ ++ G   P ++      SG+       R
Sbjct: 452 KTVYQIDKLDLAKVAKSYGFPVPPKVNITIGASGKTPATKKRR 494


>gi|312375048|gb|EFR22493.1| hypothetical protein AND_15188 [Anopheles darlingi]
          Length = 879

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 131/591 (22%), Positives = 254/591 (42%), Gaps = 48/591 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL +
Sbjct: 214 DLSRPLMKAIGALGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYK 273

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     +    L + PTREL  QV +  + L   T V V + IGG+ V  +   L+   
Sbjct: 274 PNAAQAVT--RVLVLVPTRELGAQVYQVAKQLTQFTNVEVGIAIGGLDVKAQEAVLRTNP 331

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S    R+ ++
Sbjct: 332 DIVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQTML 391

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K  V++ + +      ++    + V       R+  +  ++  
Sbjct: 392 FSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRVREGREADREPILAALVCR 451

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  V +AT
Sbjct: 452 TFHDHCMVFVQTKRTAHRLRILLGLLGVKAGELHGDLTQAQRLESLKQFKDEQIDVLVAT 511

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +  VI+  + +  E+ +HR GRT RAGR G+SV +  +  +R  + + +
Sbjct: 512 DVAARGLDISGVTTVINFVMPATLEHYIHRVGRTARAGRAGVSVSLAGELERRIVKDIVK 571

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A   V     P    I ++   ++      +D +  +E+    +  A+   +++ +   
Sbjct: 572 NAVNPVKNRIIPG--EIIDKYRAKVAALESEIDKVLAEERAEKMLRQAE---QQLTSTER 626

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSR-----------------AFKVGGGSRDNFK 464
           ++        +        S R++  +  R                   + G    ++  
Sbjct: 627 KLKGIAPHKTDGPPREWFQSQREKREEKDRLSGVDPEELAAKRKAKKRKRRGDEDDEDDF 686

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSAD-GVDLLRR 523
               +      K K            S G       A  V  + +  + + +  ++ LR+
Sbjct: 687 DPVRYHQEKMKKAKVT--------TSSGGKKST---AKTVNENKSAKQQAKERAMEELRK 735

Query: 524 --------TVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKR 566
                   +   ++  ++     +  D R     G   +N +   T RF+R
Sbjct: 736 VSMVQAKLSKIRNRPTRVTATSEDADDPRPNGIGGGGKRNKKSKNTTRFER 786


>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 411

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 198/382 (51%), Gaps = 3/382 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA 
Sbjct: 7   SLNSKLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLAL 66

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +     +      AL + PTRELAVQV +        T + V +  GGVS+  +      
Sbjct: 67  SPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++ TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L
Sbjct: 127 GIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI +L+K   +D   + +A  N   ++I+     V    +   + +++R   
Sbjct: 187 LFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSKN 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDV
Sbjct: 247 WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    
Sbjct: 307 AARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEVVL 366

Query: 364 NVSVVWEPAPSVE-AIRERDAQ 384
           +  +  +  P  E    + D +
Sbjct: 367 DKRLPQQWLPGFEPDFNKMDTE 388


>gi|114046940|ref|YP_737490.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113888382|gb|ABI42433.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 427

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 189/382 (49%), Gaps = 4/382 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L       
Sbjct: 19  PLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAE 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHI 127
             A     L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SA
Sbjct: 139 LVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +  ++ SE       + R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRALTAKLLHQPLEYHLQSEQESTI--EQRVITVNREQKTALLAHLIKQHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
           V E  P  EA  E   + + Q+
Sbjct: 377 VREQIPGFEANAEMPLEVLAQE 398


>gi|195938012|ref|ZP_03083394.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4024]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKDTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|195169451|ref|XP_002025535.1| GL15249 [Drosophila persimilis]
 gi|194109014|gb|EDW31057.1| GL15249 [Drosophila persimilis]
          Length = 688

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/365 (29%), Positives = 184/365 (50%), Gaps = 15/365 (4%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
             +G+   T++Q       L  +D++  AQTGSGKT+A+ L     +  +         P
Sbjct: 2   KRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHI-GKQPPILRGEGP 60

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           +AL +APTRELA Q+   +                 GG S   + RDL+ G  +++ TPG
Sbjct: 61  IALVLAPTRELAQQIQSVVRDYGHLCQPEIRHTCIFGGSSKVPQARDLERGVEVIIATPG 120

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  +  N++    +VLDEAD MLD+GF   I  I++     R+++M+SAT    +
Sbjct: 121 RLIDFLENRNTNLARCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEV 180

Query: 194 TTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN------ 246
             LA ++  D +++NI S N   + +I     +    ++   +V +L+     N      
Sbjct: 181 QALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEMEKPQRMVRLLKEIAPTNNSANNG 240

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+  V    +++    +   ++ G+ +Q ER + L+  R+G++ + IATDVA
Sbjct: 241 SKIIIFVETKIKVEDILQIIRTEGYIATSIHGDKTQNERDSVLKDFRNGKSNILIATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FR 361
           +RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +      +  ++A  L     
Sbjct: 301 SRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLE 360

Query: 362 EANVS 366
           EA  +
Sbjct: 361 EAGQT 365


>gi|157156397|ref|YP_001462652.1| ATP-dependent RNA helicase DbpA [Escherichia coli E24377A]
 gi|193062707|ref|ZP_03043801.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194426050|ref|ZP_03058606.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|260843691|ref|YP_003221469.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|260855042|ref|YP_003228933.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|260867791|ref|YP_003234193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300822487|ref|ZP_07102626.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300904996|ref|ZP_07122814.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|301305840|ref|ZP_07211925.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|331667742|ref|ZP_08368606.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331677132|ref|ZP_08377828.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
 gi|157078427|gb|ABV18135.1| ATP-independent RNA helicase DbpA [Escherichia coli E24377A]
 gi|192931829|gb|EDV84429.1| ATP-independent RNA helicase DbpA [Escherichia coli E22]
 gi|194416105|gb|EDX32371.1| ATP-independent RNA helicase DbpA [Escherichia coli B171]
 gi|257753691|dbj|BAI25193.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O26:H11 str. 11368]
 gi|257758838|dbj|BAI30335.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O103:H2 str. 12009]
 gi|257764147|dbj|BAI35642.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O111:H- str. 11128]
 gi|300403145|gb|EFJ86683.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300524903|gb|EFK45972.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300838930|gb|EFK66690.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|315254386|gb|EFU34354.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|323153565|gb|EFZ39816.1| ATP-independent RNA helicase dbpA [Escherichia coli EPECa14]
 gi|323162444|gb|EFZ48296.1| ATP-independent RNA helicase dbpA [Escherichia coli E128010]
 gi|323179693|gb|EFZ65254.1| ATP-independent RNA helicase dbpA [Escherichia coli 1180]
 gi|324117462|gb|EGC11368.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|331065327|gb|EGI37222.1| ATP-independent RNA helicase DbpA [Escherichia coli TA271]
 gi|331075821|gb|EGI47119.1| ATP-independent RNA helicase DbpA [Escherichia coli H591]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|78048143|ref|YP_364318.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036573|emb|CAJ24264.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 458

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPAVTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I TLA+   K+ V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|13959325|sp|Q9JIK5|DDX21_MOUSE RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|16975510|gb|AAD43959.3|AF159131_1 nucleolar RNA helicase II/Gu [Mus musculus]
          Length = 851

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 242/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 673

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 674 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 731

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 732 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRRW 775

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G +  G++ +   +DG+   F+  +G S+N
Sbjct: 776 QLTVAT-EQPELEGPQD-GYRGRMGQRDGSRGAFRGQRGGSRN 816


>gi|218700063|ref|YP_002407692.1| ATP-dependent RNA helicase DbpA [Escherichia coli IAI39]
 gi|218370049|emb|CAR17825.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           IAI39]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +   S         +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPSIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L +     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNDIGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|160871634|ref|ZP_02061766.1| dead/deah box helicase [Rickettsiella grylli]
 gi|159120433|gb|EDP45771.1| dead/deah box helicase [Rickettsiella grylli]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 167/372 (44%), Gaps = 9/372 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N    I   +  +GY   T +Q   +   L+ +DV+  AQTG+GKT A+ L L 
Sbjct: 1   MNFTEFNFNTQILSGIQTQGYRTATPIQIKAIPAILQGRDVVGLAQTGTGKTAAYALPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRE 117
             L        P     AL ++PTR+LA Q+   +     +T +  A           + 
Sbjct: 61  QQLTE-----GPPGQLRALILSPTRDLADQICVAMNHFGRQTHLRCATIYGGKINYTRQY 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +        IV      L      K   +  +K +VLDEAD + D GFRD I  IL   P
Sbjct: 116 QLLTGGVDIIVACPGRLLDLLQGKKNNFLQQVKHLVLDEADHLFDHGFRDAIYHILKHLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT+S  I  L        VR+ I       +        V+ + + N +  
Sbjct: 176 PRRQNLLFSATMSADIRLLIDKVLHRPVRIQIGEPKPAVTI-TQTLFPVSETLKVNLLET 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+ H   +AI+F  T+       + L +  ++  +  G LSQ  R  AL   R G  + 
Sbjct: 235 ILQNHSIHSAIIFTRTKHRAQCLAEHLRDLGYKATSFQGNLSQSRRKTALGKFRQGELKF 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+  L  VI+ ++ +      HR GRTGRA + GM+  +I +N +R+ +
Sbjct: 295 LVATDVAARGIDIDHLSHVINFDMPNTAIEYTHRIGRTGRADKLGMAFSLITKNDRRKIQ 354

Query: 358 RLFREANVSVVW 369
            +       +  
Sbjct: 355 SIEHLQKKRLEE 366


>gi|157144413|ref|YP_001451732.1| ATP-dependent RNA helicase RhlB [Citrobacter koseri ATCC BAA-895]
 gi|189040026|sp|A8ACT3|RHLB_CITK8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|157081618|gb|ABV11296.1| hypothetical protein CKO_00122 [Citrobacter koseri ATCC BAA-895]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL  +G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSSFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIEAYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|157371044|ref|YP_001479033.1| ATP-dependent RNA helicase DbpA [Serratia proteamaculans 568]
 gi|157322808|gb|ABV41905.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
          Length = 460

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLANLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKINVAQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------VAAQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+  +      +  + + I+ R        R   +V+ +R++   
Sbjct: 185 SATYPSGIERISARVQRSPL-NVEVDDGEEQTTIEQRFYETTRDQRPAVLVSAIRHYQPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQSVYEALESRGINVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +LELV++ EL+ +PE  +HR GRTGRAG  G ++ +       RA  +      
Sbjct: 304 RGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLSGKAISLCTPQEMTRAHAIEDYLQT 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W P   +           L+  +    I G  K  + 
Sbjct: 364 KVKWAPVSEL----SGAGNTTLEAEMVTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G G+           +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 374 SGAGNTTLEAEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPVHAYVAIR 433

Query: 515 ADGV----DLLRRTVKLDKGIQLKYL 536
            +        L++     K  +++ L
Sbjct: 434 KESARKALQQLQQGKIKGKNCKVRLL 459


>gi|116205599|ref|XP_001228610.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|118572553|sp|Q2GMX1|HAS1_CHAGB RecName: Full=ATP-dependent RNA helicase HAS1
 gi|88176811|gb|EAQ84279.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 586

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 209/471 (44%), Gaps = 11/471 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+      +++E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 118 NLSDKTMMSINEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEML--N 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + RF P +    + + PTRELA+Q+      L         V IGG ++  E   L  G 
Sbjct: 176 SLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANIRAEEDKLGKGV 235

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++++ TPGRL DH+R       +LK++++DEAD +L++GF D++  I+   PK+ R  M 
Sbjct: 236 NLLIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEMRHIVKILPKENRQTML 295

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+   +      +D   V+V    R   + + L+ 
Sbjct: 296 FSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVIVDADKRFLLLFSFLKK 355

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  IVF S+  SV  ++++L     QV+ L G+  QQ+R+N      + +    I T
Sbjct: 356 MAKKKIIVFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 415

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P + +HR GRT R    KG S+  +          L 
Sbjct: 416 DVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNTKGRSLLFLQPCELGFLAHL- 474

Query: 361 REANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI--A 417
           + A V VV    P  + +  +   ++++    +L+    D  +      A H    +   
Sbjct: 475 KAAKVPVVEYDFPKNKILNVQSQLEKLIGSNYYLNQSAKDGYRSYLHAYASHSLRSVFDV 534

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                +  A          V +  G    RD     +   GS+    G   
Sbjct: 535 QKLDMVKVAKGFGFSTPPRVDITLGAGMSRDKKPQARRAYGSQPRQSGHQR 585


>gi|227551392|ref|ZP_03981441.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257895994|ref|ZP_05675647.1| helicase [Enterococcus faecium Com12]
 gi|227179511|gb|EEI60483.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
 gi|257832559|gb|EEV58980.1| helicase [Enterococcus faecium Com12]
          Length = 449

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + A+ +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINADKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QINRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|238897336|ref|YP_002923013.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259585614|sp|C4K8M8|RHLB_HAMD5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|229465091|gb|ACQ66865.1| ATP-dependent RNA helicase [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 422

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 179/344 (52%), Gaps = 3/344 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ +A+  +G+ + T +Q       L  +DV   AQTG+GKT+AF  ++ + LL   
Sbjct: 16  LHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNA 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P AL + PTRELA+Q+  + E L   T + + +  GG    ++ + L++G 
Sbjct: 76  ADETRQCEQPRALIMVPTRELAIQIYTDAETLSQFTSLKMGLAYGGDGYDKQLKILESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GTPGR+ D+ +   ++++ L+ +VLDEAD M DLGF  DI ++    P   KR  +
Sbjct: 136 DILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYDLGFIKDIRWLFRRMPPAEKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  L+         + +    +  S I       +  D+   +  ++    
Sbjct: 196 LFSATLSYRVRELSFEQMNHPEYIEVEPLQKIGSQIQEELFYPSNEDKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+         L     +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRCIIFANTKQRCEDIWGHLVADGHRVGLLTGDVAQRKRIQILDDFSKGYLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           AARG+ +P +  V + +L  N E+ +HR GRTGRAG KG S+ +
Sbjct: 316 AARGLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEKGYSISL 359


>gi|220903642|ref|YP_002478954.1| DEAD/DEAH box helicase domain-containing protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219867941|gb|ACL48276.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 562

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 209/375 (55%), Gaps = 7/375 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E++P+ +  A +  G+  L  VQ   L   L  +D++V ++TGSGKT  + L +   L A
Sbjct: 47  EDMPEDMRTACARAGWQGLMPVQSLALPYLLEGRDIMVQSRTGSGKTGCYLLPMLPRLSA 106

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +        AP AL +APTRELAVQV RE   L+  TG+V     GGV   ++   L+NG
Sbjct: 107 D------LKAPQALVLAPTRELAVQVEREAAVLFEGTGIVTVAVYGGVGYKKQMDALRNG 160

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++VGTPGR+ DH+  + L++  L+ +V DEAD ML +GF  D++ I    P++R    
Sbjct: 161 AQLIVGTPGRVLDHLLRRTLDLGDLRELVFDEADRMLSIGFYPDMKEIQRYLPRRRIHTC 220

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT  P +  L+  +  +   ++++ +    +++ +    V   D+D A+V +L    
Sbjct: 221 LFSATYPPHVLKLSGEFMAEPAMLSLSQKEVHVAEVQHLFCEVKPMDKDRALVRLLETEN 280

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             +AI+FC+T+++V     VL    +    LS +LSQ  R   L+ +R G+ +  +ATDV
Sbjct: 281 PASAIIFCNTKSNVHYVAGVLQGFGYNADELSADLSQSRREAVLEKIRQGKLQYLVATDV 340

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P+L  V   E   + E+ +HR+GRTGRAG  G  + ++    +   +R+ +  
Sbjct: 341 AARGIDIPELSHVFLYEPPEDHESYIHRAGRTGRAGAAGTVISLVDVMQRMELDRIAKHY 400

Query: 364 NVSVVWEPAPSVEAI 378
            + ++  P P+ E +
Sbjct: 401 KIGLIPLPLPTDEDV 415


>gi|79313227|ref|NP_001030693.1| EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1);
           ATP-dependent helicase/ translation initiation factor
           [Arabidopsis thaliana]
 gi|332641918|gb|AEE75439.1| translational initiation factor 4A-1 [Arabidopsis thaliana]
          Length = 415

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/351 (31%), Positives = 181/351 (51%), Gaps = 7/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L    
Sbjct: 46  LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS- 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H
Sbjct: 105 -----LIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVH 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++ + L   ++K  VLDEADEML  GF+D I  I    P K ++ +FS
Sbjct: 160 VVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAK 245
           AT+ P    + + +    VR+ +  +      I      +     +   + ++       
Sbjct: 220 ATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           RGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  + ++ +R  
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390


>gi|261213074|ref|ZP_05927358.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
 gi|260838139|gb|EEX64816.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
          Length = 448

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + + PTRELA QV  EL  + A       +  GG + + + + L  G  
Sbjct: 66  TKAFSAKDPRGVILVPTRELAKQVYGELRSMLAGLSYTATLITGGENFNDQVKALARGPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDMAMEMLNEPKRIAIGIGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNKSNLKAVALSGNLNQTQRNTIMSQFERTVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPSVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +E    ++
Sbjct: 366 QQDIQFEVLEGLQ 378


>gi|257887499|ref|ZP_05667152.1| helicase [Enterococcus faecium 1,141,733]
 gi|293570504|ref|ZP_06681559.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
 gi|257823553|gb|EEV50485.1| helicase [Enterococcus faecium 1,141,733]
 gi|291609450|gb|EFF38717.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E980]
          Length = 449

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 187/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I EAL+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEALAAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + A+ +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINADKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QLNRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|76253275|emb|CAH61467.1| Pl10-related protein [Rana lessonae]
          Length = 687

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 197/383 (51%), Gaps = 20/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           N+ ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S +   
Sbjct: 229 NMGEIIMGNIQLTRYTRPTPVQKHAIPIIIDKRDLMACAQTGSGKTAAFLLPILSQIYAD 288

Query: 63  --------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                   L +N R+      PL+L +APTRELAVQ+  E      ++ V   V  GG  
Sbjct: 289 GPGDAMKHLKDNGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSKVRPCVVYGGAD 348

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           + ++ RDL+ G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+
Sbjct: 349 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIV 408

Query: 174 DSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +          + +MFSAT    I  LA+++ ++ + + +        +I  + V V   
Sbjct: 409 EQDTMPPKGVRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEEM 468

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL 
Sbjct: 469 DKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALH 528

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++    
Sbjct: 529 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 588

Query: 349 PQ---NMQRRAERLFREANVSVV 368
            +   N+ +    L  EA   V 
Sbjct: 589 NEKNINITKDLLDLLVEAKQEVP 611


>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
          Length = 688

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 112/417 (26%), Positives = 201/417 (48%), Gaps = 12/417 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + + +A+   G+   T +Q A +   L  +D+   A TG+GKT AF L +  
Sbjct: 146 SFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPILE 205

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  +    S    L + PTRELA+QV      L   + V + +C GG+ +  +   
Sbjct: 206 RLLFKPKQ---KSVTRVLVLVPTRELAMQVFHVTRLLSQFSQVEICLCAGGLDIKAQEAA 262

Query: 121 LQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+ G  IV+ TPGRL DH+      ++  ++ +VLDEAD MLD  F D ++ ++      
Sbjct: 263 LRLGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEADRMLDEAFADQMKELIRLCSAN 322

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIV 236
           R+ L+FSAT++  I  LA    K+ VR+ I        ++    +        +R++ +V
Sbjct: 323 RQTLLFSATMTDQIEQLAAVSLKNPVRIFINENTETALNLRQEFIRIRENHEHERESIVV 382

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++      + ++F  T+ +  R   +L     +V  L   LSQ +R   L   ++    
Sbjct: 383 ALVTRIFPDHTMLFVQTKRACQRLHIILGLLGIKVGQLHSGLSQTQRVETLSRFKNAELD 442

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + I+TD+AARG+D+  +  VI+ ++ ++ +  +HR GRT RAGR G SV +     ++  
Sbjct: 443 LLISTDLAARGLDIEGVLTVINMQMPASLKQYIHRVGRTARAGRVGRSVSLFGAADRKLL 502

Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +        +      +   + E  ++RI      +  ++ + K    + LA+ +
Sbjct: 503 KEIVATHKGAPLKQRRIDA--GVIEAYSKRIAALEESIQRVEEEFKAERALRLAEEE 557


>gi|268573988|ref|XP_002641971.1| Hypothetical protein CBG16678 [Caenorhabditis briggsae]
          Length = 972

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 119/397 (29%), Positives = 203/397 (51%), Gaps = 10/397 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +   +   L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +
Sbjct: 306 IKTFAQCGLNLKMMNVLKKLDYSKPTSIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPM 365

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L +         P+A+ +APTRELA+Q  +E        G+ VA   GGV +  + 
Sbjct: 366 FRHIL-DQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQI 424

Query: 119 RDLQNGAHIVVGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            DL+ GA IVV TPGR+        GK  N+  +  +VLDEAD M D GF   I  ++++
Sbjct: 425 ADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNN 484

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               ++ ++FSAT    +  LA+      V + +  ++   SD+   AV+     +   +
Sbjct: 485 IRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKL 544

Query: 236 VNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDG 293
           + +L  Y+    +IVF   +         L +  +  VA   G + Q +R +++   + G
Sbjct: 545 LELLGMYYEQGCSIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTG 604

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
             +V +AT VAARG+D+ +L LV++ +  ++ E+ +HR GRTGRAGRKG +   + P++ 
Sbjct: 605 VIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQ 664

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           ++ A  + R    + V  PA  ++A+ ER  + +  +
Sbjct: 665 EKMAGEICRAFETAGVKPPA-DLKAMFERFKKEMEAE 700


>gi|15804370|ref|NP_290410.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 EDL933]
 gi|15833967|ref|NP_312740.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168764143|ref|ZP_02789150.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217325465|ref|ZP_03441549.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|32363366|sp|Q8XAT4|RHLB_ECO57 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|12518640|gb|AAG58974.1|AE005609_6 putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364188|dbj|BAB38136.1| putative ATP-dependent RNA helicase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189365822|gb|EDU84238.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           EC4501]
 gi|217321686|gb|EEC30110.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           TW14588]
 gi|326347935|gb|EGD71649.1| ATP-dependent RNA helicase RhlB [Escherichia coli O157:H7 str.
           1044]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 186/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|322806015|emb|CBZ03582.1| ATP-dependent RNA helicase YfmL [Clostridium botulinum H04402 065]
          Length = 421

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+  V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|320195643|gb|EFW70268.1| ATP-dependent RNA helicase DbpA [Escherichia coli WV_060327]
          Length = 457

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +       +      AL + PTRELA QV  EL  L    +   +    GG     
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|320166262|gb|EFW43161.1| ATP dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 633

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 190/383 (49%), Gaps = 20/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I   +    Y   T VQ+  +      +D++  AQTGSGKT AF L + S L  +
Sbjct: 177 SLADAIHSNVELASYHKPTPVQKHAIPIIHSRRDLMACAQTGSGKTAAFLLPILSNLWKQ 236

Query: 66  NDRF------------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                              +   AL +APTRELAVQ+  E      ++G+   V  GG  
Sbjct: 237 GPAVPPPRPSGPGGYRRQKTHIEALVLAPTRELAVQIYEEARKFSYRSGIRACVVYGGTD 296

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI---- 169
           + ++ RD++ G  ++V TPGRL D +    +++ + + VVLDEAD MLD+GF   I    
Sbjct: 297 IGQQLRDIERGCQLLVATPGRLMDLLERGKISLDNCRYVVLDEADRMLDMGFEPQIREIV 356

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           E     +  +R+MLMFSAT    I  LA+++ +D + + +        +I  + + V   
Sbjct: 357 EKNDLPAMGERQMLMFSATFPKEIQALARDFLEDYLFLAVGRVGSTSENITQKLIWVDEH 416

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           D+ + ++++L   G +   + F  T+ +       L    F   ++ G+ SQ+ER +AL+
Sbjct: 417 DKRSMLLDLLSAAGPECLTLCFVETKRAADSLEDFLYHEGFPAASIHGDRSQREREDALR 476

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +AT VAARG+D+P+++ VI+ +L +  +  +HR GRTGR G  G+S    
Sbjct: 477 TFRSGHTPILVATAVAARGLDIPNVKHVINYDLPTEIDEYVHRIGRTGRVGNLGLSTSFF 536

Query: 349 PQNMQ---RRAERLFREANVSVV 368
            +  +   R    L  +A   V 
Sbjct: 537 NEKNRSLARELLDLLTDAGQEVP 559


>gi|313891630|ref|ZP_07825237.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|329122052|ref|ZP_08250660.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
 gi|313119908|gb|EFR43093.1| putative DEAD-box ATP-dependent RNA helicase CshA [Dialister
           microaerophilus UPII 345-E]
 gi|327466859|gb|EGF12375.1| ATP-dependent RNA helicase DeaD [Dialister micraerophilus DSM
           19965]
          Length = 416

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 123/398 (30%), Positives = 214/398 (53%), Gaps = 10/398 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ I E L +RG +N   +Q+ ++    + ++++  AQTG+GKT+A+ L L   +  E 
Sbjct: 10  IPE-ISEYLKKRGIINPMPIQKEVIPAIFKGRNIIGRAQTGTGKTLAYLLPLVQRIKKE- 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                +S+   + +APTREL+ Q+   L        V     IGG ++  + + L+   H
Sbjct: 68  -----SSSTQVIIMAPTRELSRQIYDVLSDFSKLLNVDSVGVIGGRTIENQIQKLKRNPH 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGRL DHIR   ++++ +K VVLDEAD+ML  GFR+DIE ++D +PKKR++LM S
Sbjct: 123 IIVGTPGRLIDHIRKNTIDLTQVKTVVLDEADQMLAAGFREDIEILIDMTPKKRQILMLS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+     LA+ Y K  + +   SE    S ++ R      + +   +V  L+      
Sbjct: 183 ATITEESKKLARKYVKAPL-IADVSEKEVASTVEQRIYETTEAGKLKLLVKHLKEMNPYM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAA 305
           A+VFC+TR         +      VV    G+++Q +R++ ++       +V +A+D+AA
Sbjct: 242 AVVFCNTREGAYELAGEVYRATHMVVDQLHGDMTQGQRNHVIRQFSKAAIQVLVASDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++ ++ +  +HR GRTGRAG KGM++  +         +L +  + 
Sbjct: 302 RGLDVEGVTHVFNYDIPTDLKYYVHRIGRTGRAGTKGMAITYVTPKDAVMLRKLEKSIHE 361

Query: 366 SVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
           ++  ++    V+ +R+   +R +  P      +  E K
Sbjct: 362 TLTRYDERGRVKKVRQAKPKRRVVTPGMYKPTKKKEHK 399


>gi|332113313|gb|AEE02033.1| X-linked DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Sus scrofa]
          Length = 661

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNANITKDLLDLLVEAKQEVP 568


>gi|325928093|ref|ZP_08189306.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325541591|gb|EGD13120.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 458

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPAVTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIAGRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I TLA+   K+ V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALEAEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|227114116|ref|ZP_03827772.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 460

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 206/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +
Sbjct: 11  LPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L      + +    GG  + ++   L +  
Sbjct: 71  ------FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+F
Sbjct: 125 HIVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+   R  IA    + +  + R        R   ++ IL ++   
Sbjct: 185 SATYPEEIEQISARVQRQPQRFEIADGVEESAI-EQRFYETTKDQRLPLLIAILGHYQPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+         L      V AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +LELV++ EL+ +PE  +HR GRTGRAG KG++V +       RA  +     +
Sbjct: 304 RGLDIKELELVVNFELAFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIEDYLGM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W    S + I  R  +  L+  +    I G  K  + 
Sbjct: 364 RIKWT---SADEI-SRSGEVALEPEMMTLCIDGGRKAKIR 399



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G            +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 374 SRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPMHAYVAIR 433

Query: 515 ADGVDLLRRTVKLDK 529
                   + ++  K
Sbjct: 434 KASAKRALQQLQKGK 448


>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
 gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 857

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 9/363 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +
Sbjct: 292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPI 351

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R         + + PTRELA+Q       L + T +   + +GG+S+  + 
Sbjct: 352 LERLLY---RPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 408

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L+    +V+ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + P
Sbjct: 409 AELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLP 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNA 234
           K R+ ++FSAT++ ++  L +      VR+   S+ +    +            S R+  
Sbjct: 469 KSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGY 528

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++I +    +  I+F   +    +   +          L G ++Q +R  +++  RDG+
Sbjct: 529 LLHICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGK 588

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATD+A+RG+D+  ++ VI+ E    PE  +HR GRT RAGR G ++ +  +  ++
Sbjct: 589 VNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRK 648

Query: 355 RAE 357
             +
Sbjct: 649 VVK 651


>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
 gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
          Length = 460

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 180/390 (46%), Gaps = 9/390 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+ +     T +Q   +   +  KDVL S++TGSGKT+AF L +    L   
Sbjct: 23  LDNRLLKNLAHQNIKTPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLHKSL--K 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    + P A+ +APTRELA QV   L  +         +  GG + + +   L+    
Sbjct: 81  TKSFSKNDPRAVILAPTRELAKQVYSHLRAMLGGLTYDATLITGGENFNDQVNALRKHPK 140

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF + ++ I        ++  M 
Sbjct: 141 FIVATPGRLADHLEHQSLYLDGLETLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMF 200

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +                        S +          +   L  +   +  I+    
Sbjct: 201 SATLDHDAVNKFAGNMLDNPKRISVGLSNDEHKDITQRFYLCDHLDHKQAILNKIIETED 260

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F +TR+   R TK+L E   + VALSG+++Q  R+N +        ++ + TDV
Sbjct: 261 YFQIMIFTATRSDTDRLTKLLNEENLKAVALSGDMNQTARNNIMSQFERRVHKILVTTDV 320

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----L 359
           A+RG+DL  +  VI+ ++  + E  +HR GRTGRAG+KG ++ ++        +R    L
Sbjct: 321 ASRGLDLTSVTHVINFDMPKHMEEYVHRVGRTGRAGKKGTAISLVGPKDWESFKRVETFL 380

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQD 389
            ++ + SV  E     + ++ +  +  ++ 
Sbjct: 381 QQDLSFSVFEELKGKFKGLKPKHKRTFVKK 410


>gi|255654878|ref|ZP_05400287.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449624|ref|ZP_06891399.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296878056|ref|ZP_06902072.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
 gi|296261522|gb|EFH08342.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP08]
 gi|296430956|gb|EFH16787.1| ATP-dependent RNA helicase DbpA [Clostridium difficile NAP07]
          Length = 375

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   +  + 
Sbjct: 14  ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +          L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H
Sbjct: 74  NDI------QVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FS
Sbjct: 128 MIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+  +  LA  Y K+ V V+I  E    ++I    V      + +A+  +L       
Sbjct: 188 ATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFM 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+R
Sbjct: 248 AIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + +L   PE+ +HR GRTGRAG +G +   I    +R    +       
Sbjct: 308 GLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEIETAIESK 367

Query: 367 V 367
           +
Sbjct: 368 I 368


>gi|126698411|ref|YP_001087308.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|306519448|ref|ZP_07405795.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|115249848|emb|CAJ67665.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 369

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   +  + 
Sbjct: 8   ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +          L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H
Sbjct: 68  NDI------QVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIH 121

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FS
Sbjct: 122 MIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFS 181

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+  +  LA  Y K+ V V+I  E    ++I    V      + +A+  +L       
Sbjct: 182 ATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFM 241

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+R
Sbjct: 242 AIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASR 301

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + +L   PE+ +HR GRTGRAG +G +   I    +R    +       
Sbjct: 302 GLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEIETAIESK 361

Query: 367 V 367
           +
Sbjct: 362 I 362


>gi|254974450|ref|ZP_05270922.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091842|ref|ZP_05321320.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255099944|ref|ZP_05328921.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
 gi|255305833|ref|ZP_05350005.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
 gi|255313577|ref|ZP_05355160.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516261|ref|ZP_05383937.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649358|ref|ZP_05396260.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682530|ref|YP_003213815.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260686129|ref|YP_003217262.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|260208693|emb|CBA61492.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260212145|emb|CBE02789.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 375

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +     L + G    T +Q+  +      KDV+  AQTG+GKT+AF L +   +  + 
Sbjct: 14  ISENTINILKKSGITTPTPIQKESIKLIKEGKDVIAEAQTGTGKTLAFLLPIFENISLDI 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +          L ++PTRELA+Q+  E   L     V +    GG  +  + + L+   H
Sbjct: 74  NDI------QVLILSPTRELAIQITEEAMKLKESKDVSILAAYGGKDIGSQIKKLKGNIH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+  K +++S LK  VLDEAD+ML +GF++++E IL  +  K++ L FS
Sbjct: 128 MIIATPGRLLDHLNRKTIDLSKLKTFVLDEADQMLLMGFKNEVEAILKETSNKKQTLCFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI+  +  LA  Y K+ V V+I  E    ++I    V      + +A+  +L       
Sbjct: 188 ATINSQVKKLAYRYTKNPVVVSIQKEEITLNNIKQEVVETTDRKKLDALCKVLDEDNPFM 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+FC T+  V    + LA   +    L  +++Q +R   ++  R+   +  IATDVA+R
Sbjct: 248 AIIFCRTKRRVDNLEEALAIRGYNCQKLHSDIAQSKRERIMKSFRNLDIQYLIATDVASR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  + + +L   PE+ +HR GRTGRAG +G +   I    +R    +       
Sbjct: 308 GLDISGVSHIYNYDLPETPEDYIHRIGRTGRAGEEGYTCAFIDPKNERMLSEIETAIESK 367

Query: 367 V 367
           +
Sbjct: 368 I 368


>gi|294932985|ref|XP_002780540.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239890474|gb|EER12335.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 525

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 148/368 (40%), Gaps = 30/368 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P+V+ + L + GY   T++Q+      L  +D++  AQTGSGKTVAF L  
Sbjct: 166 IRTFEQGQFPEVLMKELDKAGYTEPTNIQKIGWPVALSGRDMVGVAQTGSGKTVAFMLPA 225

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L + PTRELA+QV  E        GV+     GGV  + + 
Sbjct: 226 IIHVNAQAP-LKHGDGPVVLVLVPTRELAMQVQTEATRFGKMAGVMNTAIFGGVPRYNQA 284

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I + TPGRL D +     N+  +                             
Sbjct: 285 NDLRRGVEICIATPGRLLDFLETGVTNLKRVTPDRQT----------------------T 322

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                      S A     +   +  V       N            +         +  
Sbjct: 323 MWSATWPKEVQSLARDFCREEPIRLTVGNTQLQANPDVKQRVEVVPEMDKRQMFFDWIKE 382

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    IVF  T+      T+ +  + F   ++ G+  Q+ER   L   + GR  V 
Sbjct: 383 TSATLWSRIIVFTETKKGADALTREMRYNNFNAASIHGDKEQRERDRILNDFKTGRCNVL 442

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ----- 353
           +ATDVA RG+D+ ++E V++ ++    E+ +HR GRTGRAG  G S+  I  +       
Sbjct: 443 VATDVAQRGLDIKNVEWVVNYDMPKTIEDYVHRIGRTGRAGAVGNSLTFITNDTHTPDRV 502

Query: 354 RRAERLFR 361
           R A+ + +
Sbjct: 503 RMAKDIVK 510


>gi|254228728|ref|ZP_04922151.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396550|ref|YP_003288403.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938675|gb|EDN57510.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340144|gb|ACY53938.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 443

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 172/366 (46%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+    
Sbjct: 66  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I        ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      A+            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHADVNDIAAEMLNSPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 365

Query: 364 NVSVVW 369
              + +
Sbjct: 366 QQDLEF 371


>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 795

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 173/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   +  +D++  A+TGSGKT AF   L   ++ + 
Sbjct: 264 FDEQLMHYIRKSEYSTPTPIQAQGVPIAMSGRDIIGIAKTGSGKTAAFIWPLLIHIMDQK 323

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D   P   P+ L  APTREL+ Q+ +E +       +      GG ++  + +  Q G  
Sbjct: 324 D-IKPGDGPIGLICAPTRELSQQIHQECKKFGKAYNIHTVCAYGGGNMWEQTKACQAGCE 382

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++ K  N+  +  +VLDEAD M D+GF   +  I +     R+ L+FS
Sbjct: 383 ILVATPGRLIDLVKRKATNLERVTFLVLDEADRMFDMGFEPQVRSIANHVRPDRQTLLFS 442

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    +  LA++   D +RV        + D+      ++        +      +   
Sbjct: 443 ATFRKKVERLARDILTDPIRVIQGDLGEANEDVVQIVECLSDGPAKWPWLIKRLVSFTTE 502

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L  H F +  L G++ Q ER+  +   +  +  + +ATDVA
Sbjct: 503 GSVLIFVTKKANSEELASNLKTHDFDLGLLHGDMDQSERNKVITNFKKQQMPILVATDVA 562

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ V++ +++ + +   HR GRTGRAG KG +  ++ Q     A  L R
Sbjct: 563 ARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGIKGTAYTLVTQKDVNFAGDLVR 619


>gi|302878957|ref|YP_003847521.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581746|gb|ADL55757.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 546

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 197/377 (52%), Gaps = 5/377 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+   I +A++E GY   T +QE  +   +   D++ SAQTGSGKT AF L   +
Sbjct: 2   TFEELNLNPSILKAIAETGYTEPTPIQEQAIPEIIAGHDLMASAQTGSGKTAAFILPALN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P   P  L + PTRELA QV              +   +GG+    + R 
Sbjct: 62  RLAT--PSAMPGKGPRVLVLTPTRELAQQVCDAATKYGKNMRFKIISILGGMPYPVQNRL 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   I+V TPGRL DH+    ++ S L+ ++LDEAD MLD+GF DD+E I  ++P  R
Sbjct: 120 LSSHVDILVATPGRLIDHLERGRIDFSRLEMLILDEADRMLDMGFVDDVERIAAATPATR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVNIL 239
           + L+FSAT+   +  LA    K   R+N+++   +H +I+ R +    ++ ++  + ++L
Sbjct: 180 QTLLFSATLEGVVGNLASRLLKTPKRINVSAAKDKHENIEQRMMFADDVAHKNKMLSHLL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A+VF +T+         L+     V AL G++SQ+ER+  L  MR+G  R+ +
Sbjct: 240 TDTEVNQALVFTATKRDADGLADQLSAQGHSVAALHGDMSQRERNRTLLNMRNGNVRILV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  +  VI+ +L    E+ +HR GRTGR G  G+++        +  +R+
Sbjct: 300 ATDVAARGLDVRGISHVINFDLPKFAEDYVHRIGRTGRGGSSGIAISFASNRDAQLLKRI 359

Query: 360 FREANVSVVWEPAPSVE 376
            R    S+       +E
Sbjct: 360 ERYTEQSIKMHTIEGLE 376


>gi|213158663|ref|YP_002319961.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
 gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
          Length = 383

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 199/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     ++++
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT +  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFTYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|254195234|ref|ZP_04901662.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
 gi|169651981|gb|EDS84674.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei S13]
          Length = 465

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---TRRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|330999267|ref|ZP_08322984.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
 gi|329575125|gb|EGG56676.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
           YIT 11859]
          Length = 423

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 182/370 (49%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + + +   G+ + T +Q   +    +  D+L +AQTG+GKT AF L +   ++ E 
Sbjct: 10  FAPQLEKLIEVNGFTSPTPIQMKAIPLVRQGYDLLAAAQTGTGKTAAFVLPMLQKII-EE 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + PTRELA QVG  +  L    GV  AV  GGV ++ ++  +  G  
Sbjct: 69  PTLYQKRVPRVLVLTPTRELAAQVGETILSLGKDLGVRSAVVFGGVGINPQKAAIAKGLD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +V TPGRL D +     ++S    ++LDEAD MLD+GF  D++ IL + P  R+ L+FS
Sbjct: 129 FLVATPGRLLDLMNQGFADLSKTHILILDEADRMLDMGFLPDLKRILKALPPDRQTLLFS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT SP I  LA  +  +         N+  S +      V  +D+   + +++  +    
Sbjct: 189 ATFSPEIKKLASEF-LNKPESVEIERNKDSSLVRQTLYRVPKADKHTVLRDLIVDNQWDQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  + L +      A+ G+ SQ  R+ AL+  ++ +  + +ATD+AAR
Sbjct: 248 VLVFTRTKYGADKLVRHLLKDGLVAKAIHGDKSQNARTTALREFKEHKLPILVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL    E+ +HR GRTGRAG  G +  ++      +   + +     
Sbjct: 308 GLDIEKLPQVVNYELPQQAEDYVHRIGRTGRAGEAGEAYSLVSPEELPQFAAIEKFIKKP 367

Query: 367 VVWEPAPSVE 376
           +     P ++
Sbjct: 368 LPLSDFPRLD 377


>gi|224042619|ref|XP_002190578.1| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
           [Taeniopygia guttata]
          Length = 675

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 195 IESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 254

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 255 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 314

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 315 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 374

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 375 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 434

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 435 VVWVEEPDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 494

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 495 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 554

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 555 GLATSFFNERNINITKDLLDLLVEAKQEVP 584


>gi|148992424|ref|ZP_01822119.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|168488430|ref|ZP_02712629.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|147928741|gb|EDK79754.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68]
 gi|183573033|gb|EDT93561.1| ATP-dependent RNA helicase [Streptococcus pneumoniae SP195]
 gi|332073114|gb|EGI83593.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17570]
          Length = 447

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYWLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|47217137|emb|CAG02638.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 602

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/394 (28%), Positives = 195/394 (49%), Gaps = 26/394 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++   ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 126 IESFQDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPV 185

Query: 59  ASTLLAENDRFS----------------PASAPLALAIAPTRELAVQVGRELEWLYAKTG 102
            S +  +    +                    P++L +APTRELA+Q+  E      ++ 
Sbjct: 186 LSQIYTDGPGDALQAIKSSGQENGRYGRRKQYPISLVLAPTRELALQIYDEARKFAYRSR 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V   V  GG  + ++ RDL+ G H++V TPGRL D +    + + +   +VLDEAD MLD
Sbjct: 246 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD 305

Query: 163 LGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           +GF   I  I++          + +MFSAT    I  LA+++ +D + + +        +
Sbjct: 306 MGFEPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSEN 365

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I  + V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+
Sbjct: 366 ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 425

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ++R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR
Sbjct: 426 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 485

Query: 338 AGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G  G++         N+ +    L  EA   + 
Sbjct: 486 VGNLGLATSFFNDKNSNITKDLLDLLVEAKQGIP 519


>gi|332293602|ref|YP_004432211.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171688|gb|AEE20943.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 452

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/454 (27%), Positives = 199/454 (43%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + G+   T +Q   L P +   DV+  AQTG+GKT A+ L +  TL   
Sbjct: 7   NLDKFLWNALDDMGFTQPTPIQVDALAPVMSGGDVVGIAQTGTGKTYAYLLPILRTL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L + PTREL +QV  ELE L     V VA   GG +++ ++  +  G 
Sbjct: 64  --PYSRQENPRVLILVPTRELVLQVVSELEKLTTYIDVRVAGVYGGANINTQKALIAQGQ 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + L +  ++ VV+DE D MLDLGFR  +  I D  PK+R+ +MF
Sbjct: 122 DIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQHIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---LRYH 242
           SAT++  +  L K++      + +A       +I      +         +         
Sbjct: 182 SATMTEDVDALIKDFFSTPQFIRVAKSGTPLENITQIGYKMPNFYTKVNFLLEELAFSKK 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +     R +   + K+       V  +    +Q  R N++     G+ R+ +ATD
Sbjct: 242 YPKTLLFVRDKRMADRLYLKLEEAFPGDVDLIHSNKTQNYRINSINAFAKGKVRMMVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ D+  VI+      PEN LHR GRTGRA ++G+S+ +           +   
Sbjct: 302 VMARGLDIDDITHVININTPRFPENYLHRIGRTGRAQKEGVSIVLSTPEEDEYLAEIEAL 361

Query: 363 ANVSVVWEPAPSVEAI-RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             V V  +P P   AI +E   +   +     +  + ++        A HD  +      
Sbjct: 362 MGVKVAIQPLPEDVAISKELTPEERPEAKEIFNPHRWNKNDDDAPGPAFHDKSE---KNS 418

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
           +++  G    E          R     + R  + 
Sbjct: 419 KVNLGGAYRREIAQKYKKPKTRGDKNYNKRNKRK 452


>gi|330923439|ref|XP_003300242.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
 gi|311325733|gb|EFQ91667.1| hypothetical protein PTT_11425 [Pyrenophora teres f. teres 0-1]
          Length = 606

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/433 (25%), Positives = 191/433 (44%), Gaps = 35/433 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +  ++ E +    Y   T +Q   +   L   DV+  AQTGSGKT AF + +
Sbjct: 118 VRNFEDAGLHPIMLENVKLCQYTYPTPIQSYCIPAVLTGHDVVAIAQTGSGKTAAFLIPI 177

Query: 59  ASTLLAE-----NDRFSPAS----------APLALAIAPTRELAVQVGRELEWLYAKTGV 103
            S L+ +       R +P             PL L + PTRELA Q   E   L  +T +
Sbjct: 178 LSKLMGKARQLAAPRPNPVRYNPLTDKVRAEPLVLVVCPTRELACQTFDEARRLCYRTML 237

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLD 162
              V  GG     +R  L+ G  I++ TPGRL D  +    L+   LK  ++DEADE+L 
Sbjct: 238 RPCVIYGGAPTKNQREQLEMGCDILIATPGRLMDFAQNANLLSFRRLKFTIIDEADELLS 297

Query: 163 LGFRDDIEFILD-----SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
            G+ D +E I       +      ++  +     A     +    D  R+ +      H 
Sbjct: 298 GGWEDVMEKIFQGGDTNTDADHTYLMFSATFPKEARRLAKEYMADDFTRIKVGRVGSTHE 357

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           +I  + + V  S ++ A+ +++   G +  +VF +++A        L      V ++  +
Sbjct: 358 NIKQQIIWVEESAKNQALFDLIFSEGPQRTLVFTNSKAKCDMVDDFLYNKALPVTSIHSD 417

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSG 333
            +Q+ER +AL+  R  R  + +AT V ARG+D+ +++ VI+ +L S         +HR G
Sbjct: 418 RTQREREDALRSFRTARCPILVATGVTARGLDVANIKHVINYDLPSTMHDGITEYIHRIG 477

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
           RT R G +G +        +   E L +            S +A+ E   Q I +DP  +
Sbjct: 478 RTARIGNEGKATSFFNDRNEDIGEDLTKIL--------LESNQAVPEFLQQHIPEDPTKI 529

Query: 394 DSIQGDEKKMVDV 406
           +   G + +  + 
Sbjct: 530 NWHDGTDDESDNA 542


>gi|294626035|ref|ZP_06704645.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599705|gb|EFF43832.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 458

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/410 (31%), Positives = 199/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I  LA+   K+ V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDSIRALARELLKEPVEITVEGADSAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETTRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|297744770|emb|CBI38032.3| unnamed protein product [Vitis vinifera]
          Length = 797

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 313 LSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 372

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 373 PMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 432

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 433 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 492

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++ 
Sbjct: 493 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMK 552

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L
Sbjct: 553 ESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISL 612

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 613 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 672

Query: 348 IPQNMQ---RRAERLFREANVSVVWE 370
           +  +        +++  + N  V  E
Sbjct: 673 LTLHDSDVFYDLKQMLIQNNSPVPPE 698


>gi|239827745|ref|YP_002950369.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
 gi|239808038|gb|ACS25103.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
          Length = 435

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/430 (30%), Positives = 211/430 (49%), Gaps = 26/430 (6%)

Query: 1   MK--IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK  +FE       I EA+ E  +   T +QE I+   LR + V+  +QTG+GKT A+ L
Sbjct: 1   MKETLFERFSFQPFIIEAIKELRFYKPTEIQERIIPSILRGESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGV 112
            +   +  +++      A  A+  APTRELA Q+  E+    ++  +   +     IGG 
Sbjct: 61  PIIEKIDPDHE------AVQAVITAPTRELATQIYHEILKIIKFCPSDRQITARCFIGGT 114

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              +    L+   HIVVGTPGR+ D IR + LN+     +V+DEAD MLD+GF  D++ I
Sbjct: 115 DKQKAIEKLKTQPHIVVGTPGRINDLIREQALNVWTATTLVVDEADLMLDMGFIVDVDQI 174

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               PK+ +ML+FSATI   +    K Y ++   V++A +      I++  V +   D+ 
Sbjct: 175 AARMPKELQMLVFSATIPEKLKPFLKKYMENPKYVHVAPKQVTAEKIEHVLVPLRSRDKA 234

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L  +    AIVF +T+         L E   +V  L G+L+ +ER   ++ +RD
Sbjct: 235 KLLHEMLVAYNPYLAIVFTNTKKMADEVADRLIEKGMKVGILHGDLTPRERKKMMRQIRD 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              +  +ATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G++  +   + 
Sbjct: 295 LEFQYIVATDLAARGIDIEGVSHVINYELPKDLQFYIHRVGRTARAGYTGIATTIYEPSD 354

Query: 353 QRRAERLFREAN-------VSVVWEPAP-----SVEAIRERDAQRILQDPLFLDSIQGDE 400
           Q    +L +          +   W   P     S  A ++ + +++L        I+   
Sbjct: 355 QDAITKLEKMGIEFLHRDLIRGEWVDLPPWNRRSKRAKQDGEIEQLLAKMKKSKQIKPGY 414

Query: 401 KKMVDVLLAK 410
           KK +   + K
Sbjct: 415 KKKLLAEIEK 424


>gi|148613133|gb|ABQ96191.1| vasa [Scaptotrigona postica]
 gi|205318891|gb|ACI02437.1| vasa [Frieseomelitta varia]
          Length = 624

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 176/385 (45%), Gaps = 17/385 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   +  ++ + + + GY   T VQ+  L   +  +D++  AQTGSGKT AF + +
Sbjct: 193 IESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPI 252

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            +TLL  +      S    P  + ++PTREL +Q+ +++      + +   V  GG SV 
Sbjct: 253 INTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVM 312

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  L  G HI+V TPGRL D +    +  S ++ +VLDEAD MLD+GF   IE ++D 
Sbjct: 313 HQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDH 372

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSD 230
                     +   S       ++  +  +   +                    +     
Sbjct: 373 ETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVGRNFYEVARNKK 432

Query: 231 RDNAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +D     + R + +      +VF   +         L+E+ +   ++ G+  Q++R  AL
Sbjct: 433 KDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEAL 492

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              + GR  + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +   
Sbjct: 493 ADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSF 552

Query: 348 IPQNM----QRRAERLFREANVSVV 368
                    +    R+ ++AN SV 
Sbjct: 553 FDPEEDAPLRGDLVRILKQANQSVP 577


>gi|296234835|ref|XP_002762632.1| PREDICTED: ATP-dependent RNA helicase DDX3Y [Callithrix jacchus]
          Length = 656

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 175 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 234

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 235 LSQMYTDGPGEALKAVKGNGRYGHSKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 294

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG ++ ++  DL++G H++V TPGRL D +  + + +   K +VLDEAD MLD+GF 
Sbjct: 295 VVYGGANIGQQIGDLEHGCHLLVATPGRLVDMMERRKIALDFCKYLVLDEADRMLDMGFE 354

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 355 PQIRRIVEQDCMPPKGVRHTMMFSATFPKKIQMLARDFLDEYIFLAVGRVGSTSENITQK 414

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+  V    + L    +   ++ G+ SQ+
Sbjct: 415 VVWVEDLDKRSFLLDLLGATGRDSLILVFVVTKKEVDSLEEFLYHEGYACTSIHGDRSQR 474

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R  AL+  R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGRAG  
Sbjct: 475 AREEALRQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRAGNL 534

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 535 GLATSFFNEKNVNIAKDLLDLLVEAKQEVP 564


>gi|145499813|ref|XP_001435891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403027|emb|CAK68494.1| unnamed protein product [Paramecium tetraurelia]
          Length = 402

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 175/370 (47%), Gaps = 16/370 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++ Q + + L+   Y   + +QE  +   L   +++  A+ G+GKT A+ + +   
Sbjct: 39  FEEFDLKQELMQGLAAANYEKPSPIQEESIPFALAGSNIIARAKNGTGKTGAYIIPILEM 98

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E           +L + PTRELA+QV   ++ +     V   V  GG     +   L
Sbjct: 99  LEMEGQ-------IQSLILVPTRELALQVSSLVKDIGKYMKVECMVSTGGTDFKEDIYRL 151

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H++VGTPGR+ D  + K  ++S LK  VLDEAD++L + F+  I  IL  +P + +
Sbjct: 152 KQVVHVLVGTPGRILDLAQRKLADLSKLKHFVLDEADKLLSVDFQPLIVKILQFAPPEVQ 211

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ++MFSAT    +      +      +N+  E           + +    + N+ + +   
Sbjct: 212 IMMFSATFPVDVKGFINEHVPQIQEINLMEELTLKGV-TQYYLYIDEKQKVNSNLKL--- 267

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC++   V   T+ + E  +    +  +++Q++R+      R    R  ++T
Sbjct: 268 ---IKAIIFCNSARRVELLTQKITEFGYSCFYIHAKMNQKDRNKVFHSFRKAVGRCLVST 324

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +     E  LHR GR+GR G  G++V  I +  +    ++ +
Sbjct: 325 DLFTRGIDIQSVNVVINFDFPRTAETYLHRIGRSGRFGHLGLAVNFITETDKDTLVQIEQ 384

Query: 362 EANVSVVWEP 371
           E +  +   P
Sbjct: 385 ELDTDIKPFP 394


>gi|90020267|ref|YP_526094.1| ATP-dependent RNA helicase RhlB [Saccharophagus degradans 2-40]
 gi|89949867|gb|ABD79882.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 392

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 190/378 (50%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+  ++  ALS+  +   +++Q   L   LR  DVL  AQTG+GKT AF +AL  
Sbjct: 7   SFEELNLSPLVMRALSDLKFTECSAIQAKSLPFTLRGHDVLGKAQTGTGKTAAFLIALIE 66

Query: 61  TLLAENDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
            LL         +    +L IAPTRELA+Q+ ++ E L   T +    +  G     + +
Sbjct: 67  DLLGTPIEEERYAGEARSLVIAPTRELAMQIAKDAENLVKHTDLKVHILVGGVDYAKQLQ 126

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +       I+V TPGRL D    + + +  ++ +V+DEAD MLD+GF   ++ I+  +P 
Sbjct: 127 KLQAEHIDILVATPGRLLDFCEKRAVYLDQVEVLVIDEADRMLDMGFIPQVKRIVRMTPP 186

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   FSAT S  +  L++ +  + V V+I  EN     +     LV+  ++   + 
Sbjct: 187 STHRQTLLFSATFSEDVLRLSEQWMHEPVTVSIEDENVAADRVKQVVYLVSSEEKFTVLG 246

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N++R    +N ++F + R         L    F+V  LSGE++Q +R   L+  R G+  
Sbjct: 247 NLMREPDVENIMIFANRRDQCRDLHHKLQRRGFRVGLLSGEIAQNKRIRTLEDFRTGKLT 306

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATDVA RGI +  +  V++  L   PE+ +HR GRTGRAG++G+SV +  ++   R 
Sbjct: 307 ALVATDVAGRGIHIDGISHVVNYTLPEEPEDYVHRIGRTGRAGKEGVSVSLACEDDALRL 366

Query: 357 ERLFREANVSVVWEPAPS 374
           E +       +  E  P 
Sbjct: 367 EPIQELLGRKIPCEQPPE 384


>gi|16761502|ref|NP_457119.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140801|ref|NP_804143.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213420579|ref|ZP_03353645.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425267|ref|ZP_03358017.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213585704|ref|ZP_03367530.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213616277|ref|ZP_03372103.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646345|ref|ZP_03376398.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854910|ref|ZP_03383150.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|25385254|pir||AD0830 ATP-dependent RNA helicase SrmB [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503802|emb|CAD02792.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136426|gb|AAO67992.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 444

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|258622174|ref|ZP_05717200.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
 gi|258585498|gb|EEW10221.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM573]
          Length = 452

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 189/420 (45%), Gaps = 9/420 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++   A  P  + + PTRELA QV  EL  +         +  GG + + + + L     
Sbjct: 70  NKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 369

Query: 364 NVSVVWEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
              + +E    +    + ++ R A +       ++  +   K        K   + +A G
Sbjct: 370 QQEIQFEVLDGLAGKFKGLKPRQATKKTAPSKRVEKAKAPAKAKKPASRDKSFYQNVAVG 429


>gi|253991618|ref|YP_003042974.1| ATP-dependent RNA helicase RhlB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783068|emb|CAQ86233.1| ATP-dependent RNA helicase [Photorhabdus asymbiotica]
          Length = 428

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL  +G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAF 68

Query: 60  STLLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL     +    + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ 
Sbjct: 69  HYLLTHPIAKGRQTNQPRALIMAPTRELAVQIYSDAEDLAQTTGLKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  I++GT GRL D+ +   +N++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLESGVDILIGTTGRLIDYTKQGHINLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPS 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               +   FSAT+S  +  LA      A  V +    +    I       +  ++   + 
Sbjct: 189 ANERMNLLFSATLSYRVRELAFEQMNHAEYVEVEPLQKTGHRIREELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        I+F +T+         LA    +V  L+G+++Q++R   L+   +G   
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWAHLAADGHRVGLLTGDVAQKKRLRILEEFSNGNID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +       + 
Sbjct: 369 PAIEDYIQHQIP 380


>gi|168762636|ref|ZP_02787643.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189367023|gb|EDU85439.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4501]
          Length = 457

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA  V  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADHVASELRPLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|82540694|ref|XP_724645.1| RNA helicase-1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479359|gb|EAA16210.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 443

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 193/383 (50%), Gaps = 10/383 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L+  D +  AQ+G+GKT  F ++ 
Sbjct: 22  VDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILKGYDTIGQAQSGTGKTATFVISS 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +        A  AL +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 82  LQLINYD------YVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  + L +  LK  +LDEADEML  GF+  I  +      
Sbjct: 136 DKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D   + +  +      I    V +     + + + +
Sbjct: 196 DIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +I++C+TR  V   T+ +   LF V  + G++ Q++R   ++  R G  RV
Sbjct: 256 LYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+ ARGID+  + LVI+ +L  +P+  +HR GR+GR GRKG+++  +  + + + +
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDK 375

Query: 358 RLFREANVSVVWEPAPSVEAIRE 380
               E+  S   E  P +E I++
Sbjct: 376 LKKIESYYSTQIEEMP-LEVIKK 397


>gi|308271521|emb|CBX28129.1| ATP-dependent RNA helicase rhlB [uncultured Desulfobacterium sp.]
          Length = 530

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 194/366 (53%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  +   L + G+   T +Q   L   L  +DV   AQTG+GKT AF   +AS +L+  
Sbjct: 41  IPPEVLMGLKDAGFTLCTPIQARALPLSLAGQDVAGQAQTGTGKTAAFLTTIASRILSLE 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R      P AL +APTRELA Q+  E E L+  TG+ +   IGG+   ++   L+ G  
Sbjct: 101 NRVPRL--PSALIVAPTRELAQQIHEEAEVLFRHTGLTLMQVIGGIDYQKQADMLRKGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--RRMLM 184
           +V+ TPGR+ D+ +        +K +V+DEAD +LDLGF  D+ +IL   P    R+ ++
Sbjct: 159 VVICTPGRIIDYFKQGVFKTEGIKIIVIDEADRLLDLGFSKDMRYILQKLPNYSKRQSML 218

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  L   Y      +++  E+     I+     V+   + + ++ +L+    
Sbjct: 219 FSATLSHRVMELTYEYMNLPEFISVTPEDVVVEGINQILYHVSKESKLSLLLGLLKREKW 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T++SV R T  L  + +    ++G+L Q +R + ++  + G  ++ +ATDVA
Sbjct: 279 SRVLIFANTKSSVERLTGKLKGNGYPAEGITGDLPQSKRFSLMERYKKGNIKILVATDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RGI + D+  VI+ +L ++ E  +HR GRT RAG++G ++ +         E +  +  
Sbjct: 339 SRGIHVEDISHVINYDLPNDGEIYVHRIGRTARAGKEGSAICLSCDEFVLNLENIENKIG 398

Query: 365 VSVVWE 370
             +  E
Sbjct: 399 YKIPVE 404


>gi|241148964|ref|XP_002405951.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
 gi|215493784|gb|EEC03425.1| ATP-dependent helicase (DEAD box), putative [Ixodes scapularis]
          Length = 685

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/396 (26%), Positives = 182/396 (45%), Gaps = 33/396 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P    + +  + Y   T++Q       L  +D++  AQTGSGKT+A+ L     +  + 
Sbjct: 122 FPDYCMKMIETQNYTTPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVHITHQ- 180

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-- 124
                   P+AL +APTRELA Q+ +        + +      GG     + RD +    
Sbjct: 181 PYLQRGDGPMALVLAPTRELAQQIQQVAADFGKASRIRNTCVFGGAPKGSQLRDWREFGA 240

Query: 125 -----------------------AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
                                    I + TPGRL D +    +N+     +VLDEAD ML
Sbjct: 241 LCPASVAVVQRNSQVIVVICRAGVEICIATPGRLIDFLEAGKVNLRRCTYLVLDEADRML 300

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDID 220
           D+GF   I  I++      + LM+SAT    + +LA+++ KD ++VNI +     +  I 
Sbjct: 301 DMGFEPQIRKIVEQIRPDCQTLMWSATWPKEVRSLAEDFLKDYIQVNIGALQLCANHRIV 360

Query: 221 YRAVLVALSDRDNAIVNILRYH---GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
               +   SD++N ++ + +          ++F  T+  V   T+ +  + +  + + G+
Sbjct: 361 QIVDVCQESDKENKLMELHKEIINEQDNKTLIFAETKKKVDELTRRMRRNGWPSICIHGD 420

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ ER   L   R GR+ + +ATDVAARG+D+ D+  VI+ +     E+ +HR GRT R
Sbjct: 421 KSQSERDWVLNEFRSGRSPILVATDVAARGLDVDDIRFVINYDYPHCSEDYIHRIGRTAR 480

Query: 338 AGRKGMSVFVIPQNMQRRAERL---FREANVSVVWE 370
           + + G +         ++A+ L    +EAN ++  +
Sbjct: 481 SNKTGTAYTFFTPGNMKQAKELIAVLKEANQAINPK 516


>gi|183396419|gb|ACC62099.1| ATP-dependent RNA helicase DDX18 (predicted) [Rhinolophus
           ferrumequinum]
          Length = 730

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 211/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 237 TSFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 296

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 297 AIELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 354

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 355 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 414

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 415 PIRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 474

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 475 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 534

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
              + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 535 DTGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 593

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 594 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 651

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 652 SHSLKQI 658


>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
           [Acyrthosiphon pisum]
          Length = 621

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/388 (29%), Positives = 199/388 (51%), Gaps = 5/388 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE+ P  I E + ++ +   + VQ       +   D++  AQTG+GKT+AF L     + 
Sbjct: 203 FEDYPD-ILEEIQKQKFEVPSPVQCQTWPVIMSGHDLIAIAQTGTGKTLAFLLPAFIHID 261

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +    S    P  L +APTREL +Q+  E++  Y+  G+      GG S  +++  L+ 
Sbjct: 262 FQPTPRSERKGPSILVLAPTRELVLQIESEVKK-YSYKGIKAMSIYGGASSGKQKEVLRK 320

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D +    +++S +  ++LDEAD MLDLGF   I   L      R+ +
Sbjct: 321 GVEIVIATPGRLNDFVGSGAIDLSDVTFLILDEADRMLDLGFEPQIRVSLLRVRPDRQTI 380

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           M SAT  P +  LAK+Y  + ++V + S +    +   + +L+   +     ++      
Sbjct: 381 MTSATWPPGVKRLAKSYTTNPIQVMVGSLDLTTVNTVKQDILIMDEEEKEVWLDDFLKSC 440

Query: 244 --AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F + + +V + +  L    + V ++ G   Q +R  AL+ +R+G   + IAT
Sbjct: 441 SADDKIIIFVNRKVTVDQLSSDLCMKGYIVESIHGGREQCDREMALESLRNGEVNILIAT 500

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGID+ D+ +VI+ + + + E  +HR GRTGRAG+ G+++ ++ +    +A+ L  
Sbjct: 501 DVASRGIDINDITVVINYDFTKDIEEYVHRVGRTGRAGKTGLAITLMTRRDWGKAKDLVE 560

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQD 389
               S    P P ++ +  R   +  +D
Sbjct: 561 VMEKSGQDVP-PELQEMASRYEAKKERD 587


>gi|270014204|gb|EFA10652.1| hypothetical protein TcasGA2_TC016289 [Tribolium castaneum]
          Length = 619

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 183/382 (47%), Gaps = 15/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    + + I   L E+     T +Q   +   L  +D++  A TGSGKT+ F L L
Sbjct: 177 LKTFREMKLHEGIISGLKEKKIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPL 236

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWL------YAKTGVVVAVCIG 110
               L +  +  F     P  L I P+RELA Q    ++        +    +  ++ IG
Sbjct: 237 IMFCLEQEVKLPFIKNEGPYGLIICPSRELAKQTFDIIQHFCNSLRKHGMPEIRTSLAIG 296

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           GV V      +Q G HI+V TPGRL D +  K + +S  + + +DEAD M+DLGF +D+ 
Sbjct: 297 GVPVSEAVDVIQRGVHIMVATPGRLMDMLEKKIVKLSVCRYLCMDEADRMIDLGFEEDVR 356

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V +N+        ++      V    
Sbjct: 357 TIFSYFNGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVIQEVEYVKQEA 416

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G   Q+ERS +++  
Sbjct: 417 KVVYLLECLQKTPPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSRSVEAF 475

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R     V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR+G++G++   I +
Sbjct: 476 RKHEKDVLVATDVASKGLDFPDIQHVINYDMPDDVENYVHRIGRTGRSGKQGLATTFINK 535

Query: 351 NMQR----RAERLFREANVSVV 368
           +         + L  EA   V 
Sbjct: 536 SNDESVLLDLKHLLMEAKQKVP 557


>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
           sapiens]
          Length = 828

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 150 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 209

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 210 E-LEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 268

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 269 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 328

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 329 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 388

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 389 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 448

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 449 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 505


>gi|194434617|ref|ZP_03066873.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|194417136|gb|EDX33249.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae 1012]
 gi|332084943|gb|EGI90125.1| ATP-dependent RNA helicase rhlB [Shigella dysenteriae 155-74]
          Length = 421

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|330813838|ref|YP_004358077.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486933|gb|AEA81338.1| cold-shock DEAD-box protein A [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 558

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 204/367 (55%), Gaps = 11/367 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+  N+ + +  +L +  +   T +Q   +   L +KD+L SAQTG+GKT AF + +
Sbjct: 1   MQNFQELNLNKNLNASLVKMKFDTPTPIQIKSIPIILEQKDILASAQTGTGKTAAFCIPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRE 117
              +  +           A+ + PTRELA QV   +E L + ++ +     +GG  ++++
Sbjct: 61  IEMIATKKIN-------RAIILVPTRELAKQVNDVIEKLLFQQSVIKSVCLVGGEPMNKQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+    IVVGTPGR+ DH++ K L ++ +  ++LDE D MLD+GF   I+ I+   P
Sbjct: 114 LRRLKTKPQIVVGTPGRVNDHLKRKSLLLNKVDLLILDEMDRMLDMGFSIQIDEIIKFLP 173

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+++ LMFSATI+P+I  L+K Y  +A RV++A+ N     I    + +   D+ N +V 
Sbjct: 174 KQKQTLMFSATIAPSIERLSKKYLNNAERVSVAAANATLITIKQEVINLRQEDKYNTLVE 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            ++       +VF  T+ +  +  K L +  F+  +L G L Q +R+  +   R  +  V
Sbjct: 234 QVKTKHGS-TLVFVKTKHNAKKLAKNLEKEGFESDSLHGNLRQNKRNQVIAKFRANKIHV 292

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+P +E V++ +L    E+ +HR GRTGRAG  G +   +  + +R+  
Sbjct: 293 LVATDIAARGLDIPHIEHVVNFDLPQQAEDFIHRMGRTGRAGASGTAWSFVTPSDKRKWH 352

Query: 358 RLFREAN 364
            + +  N
Sbjct: 353 EIEKILN 359


>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
          Length = 1023

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 183/364 (50%), Gaps = 6/364 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +   P  +  A++++GY   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 230 IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 289

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 290 IVHIM-DQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 348

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IV+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 349 KELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 408

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 409 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLLSDAEKMPWLLE 468

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF + +A V      L +  F++ AL G+  Q  R   LQ  + G   
Sbjct: 469 KLPGMIDDGDVLVFAAKKARVDEIESQLNQRGFRIAALHGDKDQASRMETLQKFKSGVYH 528

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 529 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEVRF 588

Query: 356 AERL 359
           A  L
Sbjct: 589 AGEL 592


>gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF]
 gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii]
          Length = 383

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 199/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     ++++
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVEGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 447

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 185/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E ++   + ++LS  G    T +QE  +   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTEFSLDARLLQSLSHMGITTPTEIQEMAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + +      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRII--STKALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKALKILGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H VV TPGRL DH+     +++ L+ ++LDEAD MLDLGF D ++ I    D  
Sbjct: 119 ALARDPHFVVATPGRLADHLAQHHFHLNGLELLILDEADRMLDLGFADQLKAINAAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   +      ++  +        AS            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLNHNEINEIASELLKDPKHVAVGASNIENQDITQKIYLCDHLDHKEALLQ 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL+    K  I+F +TR    R  K LAE  F   +LSG+L+Q  R+  +     G   
Sbjct: 239 SILKRGEQKQVIIFTATRQDTDRLAKKLAEEGFNTASLSGDLNQSARNQIMDQFSRGMQD 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRT RAG KG ++  +        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTARAGAKGDAISFVGPKDWVNF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++ +  + +  +     ++A
Sbjct: 359 KQVQQFLSKTFEFSTIEGLKA 379


>gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE]
 gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU]
 gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900]
 gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
 gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE]
 gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC
           17978]
 gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
           AB307-0294]
 gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
           19606]
 gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
 gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
 gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
          Length = 383

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 199/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     ++++
Sbjct: 65  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|195112586|ref|XP_002000853.1| GI10456 [Drosophila mojavensis]
 gi|193917447|gb|EDW16314.1| GI10456 [Drosophila mojavensis]
          Length = 748

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/488 (23%), Positives = 220/488 (45%), Gaps = 17/488 (3%)

Query: 3   IFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            F ++     +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +  
Sbjct: 253 TFASLKGAVSEATLRAIEEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPA 312

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     RF P +    + I+PTREL++Q    L+ L A       + +GG +   E 
Sbjct: 313 VELI--NKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVES 370

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G +I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  P
Sbjct: 371 EKLSKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP 430

Query: 178 KKRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           K+R+ ++FSAT +  I  L+K     +   V V+   E      ++   ++     R   
Sbjct: 431 KRRQTMLFSATQTERIDALSKLALKKEPIYVGVHDNQETATVEGLEQGYIVCPSEKRLLV 490

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++       V ++ G+  Q +R+       +  
Sbjct: 491 LFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAE 550

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQ 353
           + + + TDVAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++     
Sbjct: 551 SGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEEL 610

Query: 354 RRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               R  + A V +         +  I +   ++++    FL+    +  K        H
Sbjct: 611 GFL-RYLKAAKVPLNEFEFSWQKIADI-QLQLEKLISKNYFLNQSAKEAFKSYVRAYDSH 668

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             ++I        +A   +   + P  +       + +    +VGGG    +K  +    
Sbjct: 669 QLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGFGYYKQMNE--R 726

Query: 472 SVGSKQKA 479
             G KQ+ 
Sbjct: 727 GGGHKQRV 734


>gi|171847235|gb|AAI61473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Xenopus (Silurana)
           tropicalis]
          Length = 640

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/420 (26%), Positives = 212/420 (50%), Gaps = 13/420 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           +++ +    A++E G+ ++T +Q   + P L  +DVL +A+TGSGKT+AF +     +  
Sbjct: 152 DSVNENTLRAVTEMGFTHMTEIQHKAIRPLLEGRDVLAAARTGSGKTLAFLIPAIELVY- 210

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    L ++PTRELA+Q    L+ L A       + +GG +   E + L NG
Sbjct: 211 -KLKFMPRNGTGVLILSPTRELAMQTYGVLKELMAHHVHTFGLIMGGSNRSAEAQKLANG 269

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH++        +L+ +V+DEAD +L++GF  +++ I++  PK+R+ +
Sbjct: 270 VNIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEQEMKQIINLLPKRRQTM 329

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LA+   K         ++++ + +D      V+     R   +   L+
Sbjct: 330 LFSATQTRKVEDLARISLKKEPLYVGVDDHKETATVDGLEQGYVVCPSEKRFLLLFTFLK 389

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + 
Sbjct: 390 KNRKKKMMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAESGILLC 449

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R
Sbjct: 450 TDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIDGR-GHALLILRPEELGFL-R 507

Query: 359 LFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             ++A V +         +  I +   +++++   +L     +  K        H  ++I
Sbjct: 508 YLKQAKVPLSEFEFSWSKISDI-QTQLEKLIEKNYYLHKSAQEAYKAYIRAYDSHSHKQI 566


>gi|116628386|ref|YP_821005.1| superfamily II DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101663|gb|ABJ66809.1| Superfamily II DNA and RNA helicase [Streptococcus thermophilus
           LMD-9]
          Length = 447

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 196/471 (41%), Gaps = 29/471 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I EAL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  E+           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPESRDV------QVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D  +   L I      V+DEAD  +D+GF   ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASFP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNGQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVFKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
              L   +     P     +       R R+   A +  G +    K  S 
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAKKQSL 447


>gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 389

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 200/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + ++L   +   +V +  G     ++++
Sbjct: 71  LLNNPIQEQRFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQ 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 131 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 190

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 191 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 251 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEIAQDKRLKMLEQFKQGKHNI 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 311 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYLP 370

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 371 EIEKAIGKKLP 381


>gi|209771328|gb|ACI83976.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320642613|gb|EFX11861.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str.
           493-89]
 gi|320647966|gb|EFX16674.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H- str. H
           2687]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGYIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|153939716|ref|YP_001391033.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum F str.
           Langeland]
 gi|152935612|gb|ABS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. Langeland]
 gi|295319089|gb|ADF99466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum F str. 230613]
          Length = 421

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+  V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|90581476|ref|ZP_01237270.1| ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90437337|gb|EAS62534.1| ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 437

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/371 (29%), Positives = 178/371 (47%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + L ++G+ N T +Q   L   L   D+   AQTG+GKT+AF  A  + LL   
Sbjct: 16  LNPLVLKGLDDKGFHNCTPIQALALPVMLTGHDIAGQAQTGTGKTIAFLTATFNHLLETA 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P A+ +APTRELA+Q+  +   L A TG+   +  GG    +++  L  G 
Sbjct: 76  APAHRKTNQPRAIIMAPTRELALQIYNDASSLIASTGLKAGLAYGGEPYEKQKAVLDEGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI F+    P     L  
Sbjct: 136 DILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPSERLSL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA  +      V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVKELAFEHMNSPESVVVEPEQKTGHRIQEELFYPSNQEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AI+F +T+         LA    +V  L+G++ Q++R   L     G   + +ATDV
Sbjct: 256 PERAIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRERILDQFTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+    +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDAEDYVHRIGRTGRAGLSGHSISFACEEYAINLTAIETYI 375

Query: 364 NVSVVWEPAPS 374
              +      S
Sbjct: 376 EHGIPQSKYDS 386


>gi|15801822|ref|NP_287840.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 EDL933]
 gi|15831181|ref|NP_309954.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749013|ref|ZP_02774035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756028|ref|ZP_02781035.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769429|ref|ZP_02794436.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775172|ref|ZP_02800179.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782877|ref|ZP_02807884.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788327|ref|ZP_02813334.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|168799657|ref|ZP_02824664.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208811167|ref|ZP_03253000.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815022|ref|ZP_03256201.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820345|ref|ZP_03260665.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399223|ref|YP_002270403.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329397|ref|ZP_03445477.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792938|ref|YP_003077775.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261224337|ref|ZP_05938618.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257409|ref|ZP_05949942.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291282438|ref|YP_003499256.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|331652393|ref|ZP_08353412.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
 gi|12515409|gb|AAG56454.1|AE005371_10 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
 gi|13361392|dbj|BAB35350.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|187769343|gb|EDU33187.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016533|gb|EDU54655.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999660|gb|EDU68646.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356796|gb|EDU75215.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361561|gb|EDU79980.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371812|gb|EDU90228.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC869]
 gi|189377976|gb|EDU96392.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC508]
 gi|208724673|gb|EDZ74381.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731670|gb|EDZ80358.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740468|gb|EDZ88150.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160623|gb|ACI38056.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771330|gb|ACI83977.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771332|gb|ACI83978.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771334|gb|ACI83979.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209771336|gb|ACI83980.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|217317836|gb|EEC26264.1| ATP-independent RNA helicase DbpA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254592338|gb|ACT71699.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O157:H7 str. TW14359]
 gi|290762311|gb|ADD56272.1| ATP-independent RNA helicase DbpA [Escherichia coli O55:H7 str.
           CB9615]
 gi|320189895|gb|EFW64547.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320659158|gb|EFX26750.1| ATP-dependent RNA helicase DbpA [Escherichia coli O55:H7 str. USDA
           5905]
 gi|326340988|gb|EGD64781.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1125]
 gi|326343226|gb|EGD66993.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           1044]
 gi|331050671|gb|EGI22729.1| ATP-independent RNA helicase DbpA [Escherichia coli M718]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|6753620|ref|NP_034158.1| ATP-dependent RNA helicase DDX3X [Mus musculus]
 gi|2500528|sp|Q62167|DDX3X_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3X; AltName:
           Full=D1Pas1-related sequence 2; AltName: Full=DEAD box
           RNA helicase DEAD3; Short=mDEAD3; AltName: Full=DEAD box
           protein 3, X-chromosomal; AltName: Full=Embryonic RNA
           helicase
 gi|407996|gb|AAA53630.1| RNA helicase [Mus musculus]
 gi|1835122|emb|CAA86261.1| dead-box RNA helicase [Mus musculus]
 gi|74187753|dbj|BAE24540.1| unnamed protein product [Mus musculus]
 gi|74190343|dbj|BAE37257.1| unnamed protein product [Mus musculus]
 gi|123858229|emb|CAM15722.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Mus
           musculus]
 gi|1098036|prf||2115205A RNA helicase
          Length = 662

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 196/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase domain-containing protein [Atopobium
           parvulum DSM 20469]
 gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
           20469]
          Length = 450

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/383 (29%), Positives = 178/383 (46%), Gaps = 29/383 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   ++  G+   T VQ A +   L  KDV+ SAQTG+GKT AF L     +  E 
Sbjct: 10  LNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLPTLQRIAVEK 69

Query: 67  -DRFSPASA--------------------------PLALAIAPTRELAVQVGRELEWLYA 99
            D+                                P AL + PTRELA Q+    + + A
Sbjct: 70  HDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQIDNVAKSVCA 129

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
            TG    +  GG     +   LQ G  ++V TPGRL D +  K  ++  ++ +VLDEAD 
Sbjct: 130 STGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQVLVLDEADR 189

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           MLD+GF   +  I++  PK  + L+FSAT+  +IT+      KD  R+ IA   +  + I
Sbjct: 190 MLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIARTGQTAATI 249

Query: 220 DYRAVLVALSDRDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           +     V    +      +        +  +VFC T++ V    K L     +V  +  +
Sbjct: 250 EQHLCSVTQGQKPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAGLKVDVMHAD 309

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q+ R+ AL   R    ++ +ATDV +RGID+  +++VI+ ++  +PE+ +HR GRTGR
Sbjct: 310 RPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDYVHRIGRTGR 369

Query: 338 AGRKGMSVFVIPQNMQRRAERLF 360
           AG  G +   +  +       + 
Sbjct: 370 AGATGQAYTFMGPDEVTPLREIE 392


>gi|89902341|ref|YP_524812.1| ATP-dependent RNA helicase DbpA [Rhodoferax ferrireducens T118]
 gi|89347078|gb|ABD71281.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 473

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 216/408 (52%), Gaps = 16/408 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           K FE++   P  +   L + GY+ +T +Q A L   L  KD++  A+TGSGKT AF LAL
Sbjct: 18  KRFESLALNPATLA-NLQQLGYLEMTPIQAASLPAALAGKDLIAQAETGSGKTAAFALAL 76

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              L           A  AL + PTRELA QV  E+  L   T  +  V   GGV++  +
Sbjct: 77  LERLNP------RRFAVQALVLCPTRELADQVTIEIRRLARATDNIKVVTLCGGVALRGQ 130

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R  L+ GAHIVVGTPGR+ DH+  + LN+  L  +VLDEAD MLD+GF DD+  +    P
Sbjct: 131 RASLEQGAHIVVGTPGRVMDHLAREYLNLEALNTLVLDEADRMLDMGFFDDMATVAKQCP 190

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+ L+FSAT    I  LA+ + ++ +RV +A++  +    + R   V  ++R  A+  
Sbjct: 191 KERQTLLFSATYPEGIEKLAQQFMREPLRVQVAAQQTESLI-EQRFYEVTRANRFEAVAL 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L +    + + FC+T+         L    F  +AL GEL Q+ER   L    +  A V
Sbjct: 250 LLNHFRPISTLAFCNTKQQCKDLVTYLQAQGFSALALYGELEQRERDQVLAQFSNRSASV 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+  LE VI+ +++ +PE  +HR GRTGRAG  G+++ +   N      
Sbjct: 310 LVATDVASRGLDITQLEAVINVDITPDPEVHVHRIGRTGRAGESGLALSLASMNEMGSVG 369

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++ +      VW     ++       Q  L  P+    I G  K+ + 
Sbjct: 370 KIEQYQKRESVWHKLDELKP----TGQGPLLPPMVTLQILGGRKEKIR 413



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G            +  G K+K     ++  L   +G +R+ IG I V    TFV V  D 
Sbjct: 391 GQGPLLPPMVTLQILGGRKEKIRPGDVLGALTADAGYSREQIGKIVVTEFTTFVAVQRDI 450

Query: 518 VDLLRRTVKLDK 529
                + +   K
Sbjct: 451 ALAAMQKLNAGK 462


>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
 gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
          Length = 469

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/415 (28%), Positives = 197/415 (47%), Gaps = 22/415 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + +  A  E G  + T VQ A +   L+ KDVL  AQTGSGKT AF L +  
Sbjct: 54  SFEELGVAEWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQ 113

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL + PTRELA Q+  + + L A   +  AV +GG+ +  + + 
Sbjct: 114 RLGENP------YGIFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQI 167

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L    H+V+ TPGR+  HI          S  K +VLDEAD +LD GF+D+++ I D   
Sbjct: 168 LMERPHVVIATPGRIKAHIGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGIS 227

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NA 234
           K+R+ L+FSAT++  +  L   +   A         +    +D R + +    ++     
Sbjct: 228 KQRQTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTY 287

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  L     ++ I+F S   +    + +L E     VAL    +Q +R  AL   + G+
Sbjct: 288 LLENLELEDIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQ 347

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A + IATDVA+RG+D+P ++LV++ ++    ++ +HR GRT RAGR G ++ ++ +    
Sbjct: 348 ATILIATDVASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVE 407

Query: 355 RAERLFREANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEK 401
               +       +        + ++        +R A   ++D    + +   +K
Sbjct: 408 LVHEVESFLGKKLEEYEVSEADVLKNITKVYKAKRVAIMKMEDSGIQEKMDARKK 462


>gi|195328469|ref|XP_002030937.1| GM24308 [Drosophila sechellia]
 gi|194119880|gb|EDW41923.1| GM24308 [Drosophila sechellia]
          Length = 592

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 156/405 (38%), Gaps = 18/405 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + + L  R +   T +Q   L   L+ + ++  A TGSGKT+AF   +   L 
Sbjct: 124 FKMLPR-LQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIIDGL- 181

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    +   AL +APTRELA Q+ RE   L  +TG+            ++      
Sbjct: 182 ----RVHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECK 237

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +  L  V     DE   L       F            
Sbjct: 238 QRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACS 297

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
             +  +S    T      K A+R              +   +       + +   +  A+
Sbjct: 298 HPTKCVSFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAM 357

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++R       +VF  ++    +  + L      V  +  E S  +R N ++  R+G  
Sbjct: 358 RDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAEKSHHQRDNCVRAFREGSI 417

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q     
Sbjct: 418 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSN 477

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            R    + + +  +V       ++ +R+ +A+   + PL  + I 
Sbjct: 478 LRSIALIIKNSGCTVPEYML-QMKKVRKSEAKMRAKKPLDREDIS 521


>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 805

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL  
Sbjct: 281 SLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY- 339

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R             PTRELAVQ       L + T +  A+  GG S   +   L+   
Sbjct: 340 --RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRP 397

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++
Sbjct: 398 DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTML 457

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + ++    + +    V +       R   ++ I   
Sbjct: 458 FSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEK 517

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVF   +    R   V A    +   L G +SQ++R  +++  R G++   +AT
Sbjct: 518 IYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLAT 577

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF- 360
           DVA+RG+D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +  ++  ++   
Sbjct: 578 DVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVK 637

Query: 361 --REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
             R+    VV    P  E  R     + L+D +     +  E++++ V            
Sbjct: 638 ASRDQGAKVVSRQVPIEETDRWMKKIKDLEDEIEEVLKEEKEERLLSVTERD-------- 689

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
             L+     +   +EI      +  +  +D     + G  + +
Sbjct: 690 --LKRGENLITHEDEIKSRPRRTWFESEKDKMAEREKGAAALN 730


>gi|310767698|gb|ADP12648.1| ATP-dependent RNA helicase DbpA [Erwinia sp. Ejp617]
          Length = 459

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 136/409 (33%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   + A            AL + PTRELA QV +EL  L   T  +  + + G      
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGA 114

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  S
Sbjct: 115 QRDSLLHAPHIVVGTPGRILDHLKRETLKLGAINTLVLDEADRMLEMGFREDIDTIISHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++++ Q+D + +     +   +  +         ++  A++
Sbjct: 175 PQARQTLLFSATWPQAIAQISQSIQRDPLTIETGDVSDLPAI-EQTFYEAGAREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +       L G+L Q+ER   L    +G  R
Sbjct: 234 GLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ +LS +PE  +HR GRT RAG++G +V  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKALALVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       +VW    +++A+    A R L   +   S++G  K  + 
Sbjct: 354 HALEDYLQQKLVWCNLSALKAV----AARPLLAEMVTVSLEGGRKAKIR 398



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDL 520
                SL  G K K     ++  L    G+N   +G I +   L +V    E++   +  
Sbjct: 383 EMVTVSLEGGRKAKIRPGDILGALTGEGGLNGDQVGKIDIASTLAYVAIRRELARKVMQQ 442

Query: 521 LRRTVKLDKGIQLKYL 536
           L++     K  + + L
Sbjct: 443 LQQVKIKGKSCRARLL 458


>gi|254428748|ref|ZP_05042455.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
 gi|196194917|gb|EDX89876.1| DEAD/DEAH box helicase domain protein [Alcanivorax sp. DG881]
          Length = 450

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 187/383 (48%), Gaps = 10/383 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+ + + +AL E      T VQ A +   L  +D+ V A+TGSGKT AF L +
Sbjct: 1   MSSFADLNLHERLIKALGELEITTPTPVQTAAIPAALEGRDLRVVARTGSGKTAAFLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL  +    P +   AL + PTRELA Q  +++E L   T +   +  GG     + 
Sbjct: 61  LHQLLQYSR---PRTDTRALILLPTRELAQQTLKQVEALGRYTFIKAELLTGGEDFKVQA 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++    I++GTPGRL +H+    L +  L+ +VLDE+D MLD+GF DD+  +      
Sbjct: 118 AKMRKNPEILIGTPGRLIEHLDAGNLLLQDLEMLVLDESDRMLDMGFNDDVLRLAAECRA 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT          +      +  +    R    S          +  ++  + 
Sbjct: 178 ERQTLLFSATTGGNAMENMISSVLRDPKSLVLDSVRDLNESVSQQIITADDVKHKERLVQ 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     + A+VF +TR    R   VL     +V  L GE  Q++R  A+  ++ G  +
Sbjct: 238 WLLANETYEKAVVFTNTREQADRLGGVLVASNLKVFVLHGEKDQKDRKLAMDRLKAGAVK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGI + +L+LVI+ ++  + +  +HR GRTGR G +G ++ +I  +     
Sbjct: 298 VLVATDVAARGIHVDNLDLVINFDMPRSGDEYVHRIGRTGRVGGEGTAISLIAAHEWNLM 357

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
             + R    +  +     VEA+R
Sbjct: 358 AGIQRYLRQNFEYR---LVEALR 377


>gi|156553939|ref|XP_001602245.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 836

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/453 (26%), Positives = 212/453 (46%), Gaps = 19/453 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +VN T +Q A +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 160 NLSRPLLKAVTSMNFVNPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLLY- 218

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    +    L + PTREL VQV +  + L   T V V + +GG+ V  +   L+   
Sbjct: 219 --RPLDGAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVEVGLSVGGLDVKVQESVLRKNP 276

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH       ++  ++ ++LDEAD MLD  F + ++ I+    + R+ ++
Sbjct: 277 DIVIATPGRLIDHLANTPTFSLDTIEVLILDEADRMLDEYFAEQMKHIVRQCARTRQTIL 336

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA       V+V + S      ++    + +       R+  +  ++  
Sbjct: 337 FSATMTEEVKDLAAVSLDKPVKVFVDSNQDVAFNLRQEFIRIRKEREGDREAILAALICR 396

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   VL     +V  L G LSQ +R   L+  +D    V +AT
Sbjct: 397 TFHDHTMVFVQTKKQAHRLHIVLGLLGVKVGELHGNLSQPQRLENLRKFKDEEIDVLLAT 456

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   + + +
Sbjct: 457 DVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRGGVSVSLAGEQERSLVKEVIK 516

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +A   V     P    I E+  +++      +++I  +E++            +IA    
Sbjct: 517 QAKNPVKNRIIPP--DIIEKYNKKLQSIEEDVENILEEERQD----------REIAKIEN 564

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           + +RA     E  +       + +    S   K
Sbjct: 565 QANRAENMLKESDSKDQRSWFQTKKERQSEKEK 597


>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
 gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
 gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
           SH164]
          Length = 383

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 202/371 (54%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +LN  L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPKLKKAIDALGFKEMTPIQQKVLNYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +         AL +APTRELA+Q+  + + L   T   +V +  G     ++++
Sbjct: 65  LLNNPIKEQRYRGEARALILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             QN   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDQNFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   +  
Sbjct: 185 EQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVANRDKYKLLQE 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR    +  ++F + R  V R    L +  ++VV LSGE++Q +R   L   ++G+  +
Sbjct: 245 ILRDEPIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI + ++  VI+  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDNVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 AIEKAIGQKLP 375


>gi|294666446|ref|ZP_06731689.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603752|gb|EFF47160.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 458

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 199/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRRLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R   L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKLALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I TLA+   K+ V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|145506835|ref|XP_001439378.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406562|emb|CAK71981.1| unnamed protein product [Paramecium tetraurelia]
          Length = 442

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 172/378 (45%), Gaps = 13/378 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K F+ +P+     LS +   + T +Q+AI+   L   DV+  A+TGSGKT+A+ L     
Sbjct: 63  KDFDFLPKEYSSILSSKSITSPTPIQKAIIPLILEGNDVIAVAETGSGKTLAYALPGVIH 122

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH---RER 118
           + A+      A  P  L +APTREL  Q+  + E       V   V            ++
Sbjct: 123 IQAQPQ----ALGPRILVLAPTRELVQQIQTQYELFTRTCCVYGGVYKNLQYSELLGIKQ 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                    V+             G  +  +  VVLDEAD MLD+GF + I  I     K
Sbjct: 179 SRNNISLPSVIIGTPGRLLDFMKDGYPLKSITQVVLDEADRMLDMGFEEQITQIFQKVRK 238

Query: 179 KRRMLMFSATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +R+ L FSAT    +  LA     ++   + I  +    +    + +++   ++    V 
Sbjct: 239 ERQTLFFSATWPKEVQKLANFLCNENPNLLQIGEQGLSVNKNIQQEIIIVYENKFEQFVE 298

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  ++FC  +    +    L+ H  +   L G+L Q ER   ++  + G    
Sbjct: 299 LAERLKGQKLLIFCQKKIDTQKLEYRLSLHGLKARYLHGDLKQAERDYIMEDFKTGAINC 358

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-----IPQNM 352
            I T++A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG+++       I   +
Sbjct: 359 LITTNLASRGLDISDVDVVINYDFPDNIEDYIHRIGRTGRAGKKGLAISFFEPGSINNRV 418

Query: 353 QRRAERLFREANVSVVWE 370
           +    ++ +++N  +  E
Sbjct: 419 KSELVQVLQQSNQVIPQE 436


>gi|312279014|gb|ADQ63671.1| Peptide chain release factor 2 [Streptococcus thermophilus ND03]
          Length = 447

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/467 (24%), Positives = 195/467 (41%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I EAL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKDYIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  E+           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPESRDV------QVVITAPSRELATQIYQSTKQIAKHSDTEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D  +   L I      V+DEAD  +D+GF   ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLFKSGDLAIHKAHTFVVDEADMTMDMGFLATVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNGQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 ILKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVFKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|289769255|ref|ZP_06528633.1| helicase [Streptomyces lividans TK24]
 gi|289699454|gb|EFD66883.1| helicase [Streptomyces lividans TK24]
          Length = 556

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G +    +QE  L   L  KDV+  A+TG+GKT+ FGL L   +    
Sbjct: 87  LPET-AEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPA 145

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R +P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 146 DVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVE 205

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++VGTPGRL D    K L++ H+K++VLDEADEMLDLGF  D+E I++  P +
Sbjct: 206 ALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPAR 265

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+  A+  LA+ Y      ++  S +      ++           D+   + 
Sbjct: 266 RQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDKPEMVA 325

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 326 RILQADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 385

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++  +   R 
Sbjct: 386 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 445

Query: 357 ERLFREANVSVVWEP 371
           + + +  ++     P
Sbjct: 446 QLINKALDLGFNDPP 460


>gi|296087640|emb|CBI34896.3| unnamed protein product [Vitis vinifera]
          Length = 1180

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/361 (30%), Positives = 173/361 (47%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+   T +Q       L+ +D++  A+TGSGKT+ + +     L  +  R +P   
Sbjct: 37  VYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL--KRIRNNPQMG 94

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L ++PTRELA Q+  E       + +      GG     + RDL  GA IVV TPGR
Sbjct: 95  PTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRGADIVVATPGR 154

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + +++  +  +VLDEAD MLD+GF   I  I+   P +R+ LM++AT    + 
Sbjct: 155 LNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVR 214

Query: 195 TLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A +       V +    E   +  I     ++   ++   +  ILR     + I+   
Sbjct: 215 KIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFC 274

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   +           F   A+ G+ SQ ER   L   R GR+ V +ATDVAARG+D+ D
Sbjct: 275 STKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKD 334

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE---ANVSVVW 369
           + +VI+ +  +  E+ +HR GRTGRAG  G++     +   + A  L +    AN  V  
Sbjct: 335 IRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPP 394

Query: 370 E 370
           E
Sbjct: 395 E 395


>gi|256785357|ref|ZP_05523788.1| helicase [Streptomyces lividans TK24]
          Length = 513

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 128/375 (34%), Positives = 194/375 (51%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G +    +QE  L   L  KDV+  A+TG+GKT+ FGL L   +    
Sbjct: 44  LPET-AEALEAVGIITPFPIQEMTLPVALSGKDVIGQAKTGTGKTLGFGLPLLERVTVPA 102

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R +P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 103 DVEAGRAAPESLTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVE 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++VGTPGRL D    K L++ H+K++VLDEADEMLDLGF  D+E I++  P +
Sbjct: 163 ALKQGVDVIVGTPGRLLDLAGQKKLSLKHIKSLVLDEADEMLDLGFLPDVEKIINMLPAR 222

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+  A+  LA+ Y      ++  S +      ++           D+   + 
Sbjct: 223 RQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVANTKQFIYRAHNMDKPEMVA 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 283 RILQADGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 342

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++  +   R 
Sbjct: 343 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 402

Query: 357 ERLFREANVSVVWEP 371
           + + +  ++     P
Sbjct: 403 QLINKALDLGFNDPP 417


>gi|213402561|ref|XP_002172053.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000100|gb|EEB05760.1| ATP-dependent RNA helicase Sum3 [Schizosaccharomyces japonicus
           yFS275]
          Length = 626

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/388 (29%), Positives = 191/388 (49%), Gaps = 22/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  +   +   +   GYV  T VQ+  +      +D++  AQTGSGKT  F   +
Sbjct: 161 VNEFTNPPLNPHLLTNIKLSGYVQPTPVQKYSVPIVTSGRDLMACAQTGSGKTAGFLFPI 220

Query: 59  ASTLLAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S    +     P               P  L +APTREL  Q   E      ++ V   
Sbjct: 221 LSQAFDQGPAPIPHDEDSALGYRSRKAYPTTLILAPTRELVCQTHEESRKFCYRSWVRPC 280

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
              GG  +  + R +  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF 
Sbjct: 281 AVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 340

Query: 167 DDIEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++ +       R+ LMFSAT    I  LA+++ KD V +++        +I  +
Sbjct: 341 PQIRHIVEGADMPGVEERQTLMFSATFPRDIQVLARDFLKDYVFLSVGRVGSTSENITQK 400

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   ++ + +++IL     +   ++F  T+      T  L    F   ++ G+ +Q+
Sbjct: 401 VVFVEDQEKRSYLLDILHTLPPEGLTLIFVETKRMADALTDFLLNSSFPATSIHGDRTQR 460

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL++ R GR+ + +AT VA+RG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  
Sbjct: 461 ERERALELFRSGRSSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 520

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVS 366
           G +V    +N +   +    L +EAN  
Sbjct: 521 GQAVAFFNRNNKGIAKELIELLQEANQE 548


>gi|2580554|gb|AAC51831.1| dead box, Y isoform [Homo sapiens]
 gi|2580556|gb|AAC51832.1| dead box, Y isoform [Homo sapiens]
          Length = 660

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLVACAQTGSGKTAAFLLPI 236

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 356

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + +++IL   G+ +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 417 VVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVP 566


>gi|313812629|gb|EFS50343.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 560

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 409 TRWKLINKALNLELSE 424


>gi|197251196|ref|YP_002146376.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214899|gb|ACH52296.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPMRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.8 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|170757010|ref|YP_001781328.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum B1 str.
           Okra]
 gi|169122222|gb|ACA46058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum B1 str. Okra]
          Length = 421

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPILEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+  V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
          Length = 674

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   
Sbjct: 4   IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDG 62

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGR
Sbjct: 63  PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGR 122

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I 
Sbjct: 123 LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIE 182

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCS 252
            LA++   D +RV        + D+     ++         +      +  + + ++F +
Sbjct: 183 KLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVT 242

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +A+       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P 
Sbjct: 243 KKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPS 302

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 303 IKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 351


>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
 gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 372

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 6/369 (1%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++   P+ +  ALS +GY   T +Q   +   L  KDV+ +AQTG+GKT AF   L  
Sbjct: 3   FSDLALSPETLT-ALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLLE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +++  + A+    L + PTRELA QVG  +  L A   +  AV  GGV ++ +   
Sbjct: 62  LL--KSNERAKANTARVLILTPTRELAAQVGENVANLSAGLPLNYAVAFGGVKINPQMMK 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D  +   +    L+ +VLDEAD MLD+GF  DI+ I+   P KR
Sbjct: 120 LRKGVDILVATPGRLLDLYKQNAVRFPKLEVLVLDEADRMLDMGFIHDIKNIIKLLPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT S  I  LAK   K  V +++A  N     I+     V  S +   ++ +L+
Sbjct: 180 QTLLFSATFSDDIRALAKGLLKSPVEISVALPNATAEPIEQTLYEVQKSQKLGLLLKLLK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+   +R  K L +  F   A+    SQ  R+ AL   +  + ++ IA
Sbjct: 240 SLDLPQVLVFSRTKQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQMLIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+  L  VI+ +L    E+ +HR GRTGRAG+ G ++ ++        + + 
Sbjct: 300 TDIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLVTDEDVAALKAIE 359

Query: 361 REANVSVVW 369
                ++  
Sbjct: 360 ELIGETIEQ 368


>gi|148379738|ref|YP_001254279.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933390|ref|YP_001384035.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934793|ref|YP_001387577.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A str.
           Hall]
 gi|148289222|emb|CAL83317.1| putative ATP-dependent RNA helicase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929434|gb|ABS34934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. ATCC 19397]
 gi|152930707|gb|ABS36206.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A str. Hall]
          Length = 421

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 199/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+V V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSVIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|37748194|gb|AAH59237.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Mus musculus]
          Length = 851

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 138/583 (23%), Positives = 241/583 (41%), Gaps = 39/583 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 260 FSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 319

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 320 LQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQIERM 377

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 378 RSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 437

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNA----- 234
                  +  A               +   +         +A +       + +      
Sbjct: 438 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAA 497

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++             G++ Q++R   L+  R
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLH-GDIPQKQREITLKGFR 556

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 557 NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNK 616

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 617 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 673

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++ +  F   +   +      +          
Sbjct: 674 IEEKGAVEALAAALAHISGATSVDQRSLINSQAGF--VTMILRCSIEMPNISYAWKELKE 731

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    A+ + ++  L    G+                 +V  + V  ++      +  
Sbjct: 732 QLGESIDAKVKGMV-FLKGKLGVC---------------FDVRTEAVTEIQEKWHDSRHW 775

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK-NSQDGATKRFKRFKGASKN 573
           QL     E+P+  G    G++ +   +DG+   F+  +G S+N
Sbjct: 776 QLTVAT-EQPELEGP-PDGYRGRMGQRDGSRGAFRGQRGGSRN 816


>gi|330980323|gb|EGH78448.1| helicase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 262

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 115/257 (44%), Gaps = 17/257 (6%)

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATDVAARG+D+P +  V + ++  +PE+ +HR GRTGRAGR+G ++ ++    +R
Sbjct: 1   WTSLVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERR 60

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD----PLFLDSIQGDEKKMVDVLLAK 410
             + + R     V     P  +A+ +   +++           +S  GD    +   +  
Sbjct: 61  MLQVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIG- 119

Query: 411 HDPEKIAAGFLRIHRAG----LCAPEEITPVSLVSGRDRFR------DDSRAFKVGGGSR 460
             P  +AA  LR    G    L A E   P+   +     R         R  +      
Sbjct: 120 CSPRALAAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSSDRGDRPERERRAPV 179

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
              +G +    ++G++    A+ L+  +    G+ R++IG I+V+   + VE+  DG++ 
Sbjct: 180 PLAEGRARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLER 239

Query: 521 LRRTVKLDK--GIQLKY 535
           L   +K  +  G QLK 
Sbjct: 240 LLTKLKDTRVAGKQLKL 256


>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
 gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
          Length = 805

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 186/391 (47%), Gaps = 10/391 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL  
Sbjct: 281 SLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY- 339

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R             PTRELAVQ       L + T +  A+  GG S   +   L+   
Sbjct: 340 --RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEAVLKTRP 397

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++
Sbjct: 398 DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTML 457

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + ++    + +    V +       R   ++ I   
Sbjct: 458 FSATMTSSVDKLIRIGMDKPVRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLAYLMYICEK 517

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  IVF   +    R   V A    +   L G +SQ++R  +++  R G++   +AT
Sbjct: 518 IYTEKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRSGKSAYLLAT 577

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF- 360
           DVA+RG+D+ ++  VI+ E   + E  LHR GRT RAGR G +  +  +  ++  ++   
Sbjct: 578 DVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVK 637

Query: 361 --REANVSVVWEPAPSVEAIRERDAQRILQD 389
             R+    VV    P  E  R     + L+D
Sbjct: 638 ASRDQGAKVVSRQVPIEETDRWMKKIKDLED 668


>gi|167921338|ref|ZP_02508429.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei BCC215]
          Length = 465

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 195/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F V+AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 449

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 183/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +  +     A+            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ +
Sbjct: 239 RLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++      +        +EA
Sbjct: 359 KKVQLFLRKTFEISVIKGLEA 379


>gi|300857956|ref|YP_003782939.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685410|gb|ADK28332.1| hypothetical protein cpfrc_00538 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205685|gb|ADL10027.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330237|gb|ADL20431.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275920|gb|ADO25819.1| Putative ATP-dependent RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 441

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I +ALSE+G  +  ++QE  L   L  +D++  A+TG GKT+ FG+ L  
Sbjct: 9   TFAELGVAAEIVDALSEQGITHTFAIQELTLPIALDGRDIIGRARTGMGKTLGFGVPLLD 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    D       P AL + PTRELA QVG +LE    +T V V    GG     + + 
Sbjct: 69  RVFDAADVAELDGTPRALVVVPTRELAQQVGEDLERAARRTPVRVTTVYGGRPYEEQIQV 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +VVGTPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE +L +   + 
Sbjct: 129 LTAGVDVVVGTPGRLIDLHQQGNLTLDHVAILVLDEADEMLDLGFFPDIEKLLGALKHQH 188

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT+   + T       +   +R    + +  H+ I+         D+       
Sbjct: 189 QTLLFSATMPGPVLTLARTFMSRPIHIRAEEVNASHTHASIEQVVFQAHRMDKTAITARA 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       I+F  T+ + +   + LA   F+V  + G+L Q  R  +L M R+GR  + 
Sbjct: 249 LQAKERGKTIIFTRTKRTAAELAEDLAGRGFRVAGVHGDLGQAARELSLGMFRNGRVDIL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ D+  VI+ +    P   +HR GRTGRAG  G ++ ++  +   + + 
Sbjct: 309 VATDVAARGLDIDDVTHVINYQTPDAPMTYVHRIGRTGRAGHTGTAITLVGYDELIKWKL 368

Query: 359 LFREANVSVVWEP 371
           +  E  +     P
Sbjct: 369 ISDELGLDTPAPP 381


>gi|261339970|ref|ZP_05967828.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
 gi|288317887|gb|EFC56825.1| ATP-independent RNA helicase DbpA [Enterobacter cancerogenus ATCC
           35316]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    E L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLENLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQRID------AGLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q   + + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPEAIAAISGRVQNAPLTIEIDTVDALPAIEQQFFEVS-QKGKIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G AR
Sbjct: 234 KVLSQHKPASCVVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+  +I   DA+
Sbjct: 354 NILSEMLQLKLNWVNAPASVSIVPLDAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWVNAPASVSIVPLD 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGEMGLDGADIGKIVVHPAHVYVAVRQSVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|223462261|gb|AAI50863.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINITKDLLDLLVEAKQEVP 568


>gi|142982611|sp|P0C2N8|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
          Length = 829

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 9/363 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +
Sbjct: 292 MSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAAFVVPI 351

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R         + + PTRELA+Q       L + T +   + +GG+S+  + 
Sbjct: 352 LERLLY---RPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSLKVQE 408

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L+    +V+ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + P
Sbjct: 409 AELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEILTTLP 468

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNA 234
           K R+ ++FSAT++ ++  L +      VR+   S+ +    +            S R+  
Sbjct: 469 KSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESKREGY 528

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +++I +    +  I+F   +    +   +          L G ++Q +R  +++  RDG+
Sbjct: 529 LLHICKTIYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFRDGK 588

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATD+A+RG+D+  ++ VI+ E    PE  +HR GRT RAGR G ++ +  +  ++
Sbjct: 589 VNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRK 648

Query: 355 RAE 357
             +
Sbjct: 649 VVK 651


>gi|50549245|ref|XP_502093.1| YALI0C21472p [Yarrowia lipolytica]
 gi|74659998|sp|Q6CB69|DED1_YARLI RecName: Full=ATP-dependent RNA helicase DED1
 gi|49647960|emb|CAG82413.1| YALI0C21472p [Yarrowia lipolytica]
          Length = 618

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 17/380 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 167 LEEHLLTNIKLARYNKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSQSFFHG 226

Query: 67  DRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +P             P AL +APTREL  Q+  E +    ++ V   V  GG  +  
Sbjct: 227 PSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQIYDEAKKFAYRSWVRPCVVYGGADIGE 286

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL--- 173
           + R+++ G  ++V  PGRL D I    +++ ++K +VLDEAD MLD+GF   I  I+   
Sbjct: 287 QMRNIERGCDLLVAAPGRLVDLIDRGKVSLENIKYLVLDEADRMLDMGFEPQIRAIVQGS 346

Query: 174 -DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ LMFSAT    I  LA+++ KD + +++        +I  +   V   D+ 
Sbjct: 347 GMPDVNERQTLMFSATFPRNIQMLARDFLKDYIFLSVGRVGSTSENITQKVEYVEDGDKI 406

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +A+++IL   G    +VF  T+        VL    F   ++ G+ SQ++R  AL+M RD
Sbjct: 407 SALLDILSAAGKGLTLVFVETKRGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRD 466

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++     +  
Sbjct: 467 GTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 526

Query: 353 Q---RRAERLFREANVSVVW 369
           +   R    + +EA+  V  
Sbjct: 527 KGIVRELIDILKEAHQDVPQ 546


>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
 gi|48474674|sp|Q9P7C7|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
 gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
          Length = 1014

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 200/475 (42%), Gaps = 23/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       ++  GY   TS+Q   +      +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ + PTRELAVQ+ RE +       +      GG  +  +  DL+ GA 
Sbjct: 485 P-LKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543

Query: 127 IVVGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+        G+  N+     +VLDEAD M DLGF   +  I+++    R+ +
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----L 239
           +FSAT   A+  LA+   K  V + +   +   S+++    +     + + ++ +     
Sbjct: 604 LFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELY 663

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   +VF   + S       L +  +   ++ G   Q +R + +   + G   V I
Sbjct: 664 NNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLI 723

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT V ARG+D+  L+LV++ +  ++ E+ +HR GRTGRAG  G++V  I    ++ A  +
Sbjct: 724 ATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDI 783

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +   +S    P   ++ +  +  +++              K +  +   ++        
Sbjct: 784 AKALKMSKQPVP-KELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRN-------A 835

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVG 474
             ++ R      EE       +        S   K+                +VG
Sbjct: 836 ERKMQRKAYGEDEEDVETEAEA-------KSPLEKITPEKSTGDPTLDRVRAAVG 883


>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416 [Aureococcus anophagefferens]
          Length = 435

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 202/386 (52%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ E G+   T +Q+A +   L  +DV+  A+TGSGKT AFGL +   LL + 
Sbjct: 3   LHAALVDAVGELGWAKPTRIQKAAIPVALSGRDVIGLAETGSGKTGAFGLPILHKLLEKP 62

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         +A+APTRELAVQ+    + L A  G+     +GGV +  +   L    H
Sbjct: 63  SR------LFGVALAPTRELAVQIHEVFDALGAAIGLRCVCVVGGVEIAAQALALAKLPH 116

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
           +VV TPGRL DH+      ++   K +V+DEAD ML + F  +++ I+ + P++ R  M 
Sbjct: 117 VVVATPGRLVDHLENTKGFSLRTCKCLVMDEADRMLSMDFEKELDAIVGAIPREGRCSML 176

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  L +      V+V +  +      +D R + V    ++  +  +L     
Sbjct: 177 FSATMTSKVAKLQRASLYKPVKVAVNDKFAMPRQLDQRYLFVPAKHKECYLAAVLDARRG 236

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VFC+T A  +R T +L    F    L G+++Q +R  AL   + G A + +ATDVA
Sbjct: 237 ATALVFCATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFKAGAATILVATDVA 296

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P ++LV++ ++ ++ +  +HR GRT RAGRKG ++  + Q      +RL     
Sbjct: 297 ARGLDIPAVDLVLNYDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLIG 356

Query: 365 VSVVWEPAPSVEAI----RERDAQRI 386
           V +         A+    R  DA R+
Sbjct: 357 VKLPKADVDEDMALAFLDRVNDAARL 382


>gi|289425167|ref|ZP_06426944.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|295130858|ref|YP_003581521.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|289154145|gb|EFD02833.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           SK187]
 gi|291375854|gb|ADD99708.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|313792354|gb|EFS40453.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313816221|gb|EFS53935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313832974|gb|EFS70688.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|314914858|gb|EFS78689.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314962474|gb|EFT06574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314983655|gb|EFT27747.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|315077690|gb|EFT49741.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315080851|gb|EFT52827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
 gi|315109398|gb|EFT81374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327329827|gb|EGE71582.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA2]
 gi|327452200|gb|EGE98854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
          Length = 560

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 409 TRWKLINKALNLELSE 424


>gi|194763631|ref|XP_001963936.1| GF20995 [Drosophila ananassae]
 gi|190618861|gb|EDV34385.1| GF20995 [Drosophila ananassae]
          Length = 996

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 188/380 (49%), Gaps = 18/380 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++P  + + +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 247 FEECSLPAHVIDEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVH 306

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERR 119
           +  +         P+AL +APTRELA Q+   +                 GG S   + R
Sbjct: 307 IGNQPP-ILRGEGPVALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQAR 365

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ G  +++ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I++     
Sbjct: 366 DLERGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 425

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN- 237
           R+++M+SAT    +  LA ++  D +++NI S +   + +I     +    ++   +V  
Sbjct: 426 RQVVMWSATWPKEVQALAGDFLNDYIQINIGSMSLSANHNIRQIVEICTEMEKPQRMVRL 485

Query: 238 --------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                       +     I+F  T+  V    +++    +   ++ G+ +Q ER + L+ 
Sbjct: 486 LKEIAPTTNNAANNGNKIIIFVETKIKVEDILQIIRTEGYTATSIHGDKTQNERDSVLKD 545

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G++ + IATDVA+RG+D+ DL+ VI+ +  ++ EN +HR GRTGR  + G +     
Sbjct: 546 FRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAYTFFT 605

Query: 350 QNMQRRAERL---FREANVS 366
            +  ++A  L     EA  +
Sbjct: 606 PDNAKQARELISVLEEAGQT 625


>gi|187731861|ref|YP_001880183.1| ATP-dependent RNA helicase DbpA [Shigella boydii CDC 3083-94]
 gi|187428853|gb|ACD08127.1| ATP-independent RNA helicase DbpA [Shigella boydii CDC 3083-94]
          Length = 457

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|113197619|gb|AAI21228.1| ddx52 protein [Xenopus (Silurana) tropicalis]
          Length = 595

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 166/412 (40%), Gaps = 23/412 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       I + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 168 TFQQLEQEYKTHSKIIQNVKDFGFHTPTPIQMQAIPIMLHGREILASAPTGSGKTMAFSI 227

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL I+PTRELA Q  REL  L    G  + V        +
Sbjct: 228 PILAHLQCPKNK-----GCRALIISPTRELANQTHRELVKLSDGIGFRIHVINKAAVAAK 282

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 283 KFGPKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLA 342

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   +R +  +            +          A  +   +       + + 
Sbjct: 343 SIFVACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSIGARNSAVETVEQSLLFVGSE 402

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++++       +VF  +          L      V  +  E +QQ+R N +Q
Sbjct: 403 TGKLLAMRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQ 462

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V I T + ARGID   + +VI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 463 SFREGKIWVLICTALLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHRGKAVSFF 522

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            ++ +   R    + ++A   +  +   S   ++ +  +R+++ PL  D I+
Sbjct: 523 TEDDKPMLRSVASVIQKAGCPIP-DYIKSFRKLQSKQKKRMIKRPLKRDQIR 573


>gi|54310595|ref|YP_131615.1| ATP-dependent RNA helicase RhlB [Photobacterium profundum SS9]
 gi|56749602|sp|Q6LLL5|RHLB_PHOPR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|46915038|emb|CAG21813.1| putative ATP-dependent RNA helicase, DEAD boxfamily [Photobacterium
           profundum SS9]
          Length = 437

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 181/380 (47%), Gaps = 12/380 (3%)

Query: 1   MKI-------FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
           MK        F ++     + E L  +G+   T +Q   L   L  +D+   AQTG+GKT
Sbjct: 1   MKTTHITEQKFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIAGQAQTGTGKT 60

Query: 52  VAFGLALASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           +AF  A  + LL          + P A+ +APTRELA+Q+  +   L A TG+   +  G
Sbjct: 61  LAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYNDAAPLLASTGLKAGLAYG 120

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +  ++++    G  I++GT GR+ D  + + ++++ ++ VVLDEAD M DLGF  DI 
Sbjct: 121 GEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVIDLASIQVVVLDEADRMFDLGFIKDIR 180

Query: 171 FILDSSPKKRR--MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           F+    P  +    ++FSAT+S  +  LA  +      V +    +    I       + 
Sbjct: 181 FLFRRMPAPKARLNMLFSATLSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSN 240

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            ++   +  ++       AI+F +T+         LA    +V  L+G++ Q++R   L+
Sbjct: 241 QEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILE 300

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               G   + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+   
Sbjct: 301 QFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFA 360

Query: 349 PQNMQRRAERLFREANVSVV 368
            +        +       + 
Sbjct: 361 CEEYAINLPAIETYIEHPIP 380


>gi|292488330|ref|YP_003531212.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
 gi|292899529|ref|YP_003538898.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291199377|emb|CBJ46494.1| ATP-independent RNA helicase [Erwinia amylovora ATCC 49946]
 gi|291553759|emb|CBA20804.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora CFBP1430]
          Length = 459

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   + A            AL + PTRELA QV +EL  L   T  +  + + G      
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGA 114

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  S
Sbjct: 115 QRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++++ Q++ + +     +   +  +      A  ++  A++
Sbjct: 175 PQTRQTLLFSATWPQAIAQISQSIQRNPLTIETGDVSDLPAI-EQTFYEAASREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +       L G+L Q+ER   L    +G  R
Sbjct: 234 GLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKALPMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVSPDEMIRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       +VW    +++++    A R L   +   S+ G  K  + 
Sbjct: 354 HALEDYLQQKLVWCNLSALKSV----AARPLLAEMVTVSLDGGRKAKIR 398



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDL 520
                SL  G K K     ++  L    G++   +G I + P L +V    E++   +  
Sbjct: 383 EMVTVSLDGGRKAKIRPGDILGALTGDGGLSGDQVGKIDIAPTLAYVAIRRELARKVMQQ 442

Query: 521 LRRTVKLDKGIQLKYL 536
           L++     K  + + L
Sbjct: 443 LQQVKIKGKSCRARLL 458


>gi|268563805|ref|XP_002638939.1| Hypothetical protein CBG22166 [Caenorhabditis briggsae]
 gi|187022048|emb|CAP38818.1| hypothetical protein CBG_22166 [Caenorhabditis briggsae AF16]
          Length = 753

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 122/483 (25%), Positives = 220/483 (45%), Gaps = 33/483 (6%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + I +A +  GY + T +Q+A +   L  KD+   A TG+GKT AF L +  
Sbjct: 144 SFEQMNLSRQILKACAGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 203

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   
Sbjct: 204 RMIY---RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 260

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-----------------------LNISHLKAVVLDEA 157
           L++G  +VV TPGRL DH+                               +LK +VLDEA
Sbjct: 261 LRSGPDVVVATPGRLIDHLHNSPSFNLASIEVFLSLEKEKFRNSEIQESKNLKVLVLDEA 320

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D ML+  FRD +  ++    + R+ L+FSAT++  I  LA    K  V++ I        
Sbjct: 321 DRMLEEAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLKKPVKIFINENTDTAL 380

Query: 218 DIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            +    + +     +DR++ +  ++      N IVF  T+    R   +L     +V  +
Sbjct: 381 KLRQEFIRIRAGRETDRESMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVGQM 440

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
              L+Q +R  +L   + G   V ++TD+A+RG+D+  ++ VI+  +  + +  +HR GR
Sbjct: 441 QSSLTQGQRIESLSKFKKGEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGR 500

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           T RAG+ G S+ ++ +  ++  + +        + +   + E + E   +RI +    + 
Sbjct: 501 TARAGKAGRSISLVGEEERKLLKEIVNSNADRTLKQRLVAPEVV-EAYRRRIDELEETIQ 559

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSRAF 453
            I  +++   ++ +A+    K       +   G    + +  +      + R RD+ R  
Sbjct: 560 QIDEEDRAEKELRIAEASMAKTQQALEAVENGGAVQEKRVWMMKESQVEKQRKRDEKRQM 619

Query: 454 KVG 456
           K+ 
Sbjct: 620 KIE 622


>gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2]
 gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 389

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 199/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 11  FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 70

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     ++++
Sbjct: 71  LLNNPVQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQ 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 131 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 190

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +
Sbjct: 191 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 250

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  +
Sbjct: 251 ILREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKHNI 310

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 311 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 370

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 371 EIEKAIGKKLP 381


>gi|301612200|ref|XP_002935570.1| PREDICTED: ATP-dependent RNA helicase DDX42 [Xenopus (Silurana)
           tropicalis]
          Length = 943

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 258 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQK 317

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 318 E-LQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 376

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FS
Sbjct: 377 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFS 436

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + DI     ++         +      +   
Sbjct: 437 ATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTST 496

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 497 GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVA 556

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 557 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSNFAGDLVR 613


>gi|120564782|gb|ABM30180.1| VASA2n [Paragonimus westermani]
          Length = 606

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 188/387 (48%), Gaps = 19/387 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   ++I   +    Y   T VQ+  +      +D++  AQTGSGKT AF + +
Sbjct: 130 ISSFADLDLNRIIRNNVELAQYERPTPVQKHAIPIIASNRDLMACAQTGSGKTAAFLIPI 189

Query: 59  ASTLLAENDRFS---------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            + ++ E    S             P+AL +APTRELA Q+  +      ++ +   V  
Sbjct: 190 LNRMIEEGPGDSLIATMETNRRKQFPVALILAPTRELASQIFEDARKFAYRSRIRPCVLY 249

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  +  ++  G +++V TPGRL D I    + + H + ++LDEAD MLD+GF   I
Sbjct: 250 GGADMRAQLIEVSKGCNLLVATPGRLTDVIERGRIGLDHCRFLILDEADRMLDMGFEPQI 309

Query: 170 EFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++          + LMFSAT    I  LAK++    + + +        +I      
Sbjct: 310 RRIVEQDNLPPSGKRQTLMFSATFPHEIQMLAKDFLSRYIFLAVGRVGSTSENITQSISW 369

Query: 226 VALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V    + +A+V++L         +VF  T+         L    FQV ++ G+ +Q +R 
Sbjct: 370 VEEDKKRDALVDLLSSSDPGVLTLVFVETKRGADSLEDYLFSQKFQVASIHGDRTQDDRE 429

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL   R+GR  + +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++
Sbjct: 430 LALSCFRNGRTPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRVGNLGIA 489

Query: 345 VFVI---PQNMQRRAERLFREANVSVV 368
                   +N+ R    L  E N +V 
Sbjct: 490 TSFFNDKNRNLARGLVELLEEVNQNVP 516


>gi|219521150|gb|AAI72016.1| Ddx3x protein [Mus musculus]
          Length = 661

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 178 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 237

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 238 LSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 298 VVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 357

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 358 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 418 VVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 538 GLATSFFNERNINITKDLLDLLVEAKQEVP 567


>gi|254429992|ref|ZP_05043699.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
 gi|196196161|gb|EDX91120.1| DbpA RNA binding domain family [Alcanivorax sp. DG881]
          Length = 459

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 203/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L+  GY  +T VQ   L   L+  DV+  A TGSGKT AFGL L   
Sbjct: 6   FASLPLSAELLANLNTLGYATMTPVQAQSLPFVLKGHDVIAQASTGSGKTAAFGLGLLHP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L              AL + PTRELA QV  E+  L    G +  +   GG  +  +   
Sbjct: 66  LNP------RYYGCQALVLCPTRELADQVAGEIRRLARGPGNIKVLTLCGGQPIGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GA IVVGTPGR+  H+    L++  L  +VLDEAD MLD+GF D I  ++  +P +R
Sbjct: 120 LEHGAQIVVGTPGRVLKHLSKGTLSLEGLNTLVLDEADRMLDMGFYDSIAEVIRQTPSRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA+ +  +  +         +S I+ R   V  ++R+ A+   + 
Sbjct: 180 QTLLFSATYPAGIKQLAETF-MNNPQHVEVEALHDNSQIEQRYYEVDPAEREEAVARAIA 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                + +VFC T+         L       + L+ +L Q+ER   L +  +    V +A
Sbjct: 239 CFRPVSCVVFCVTKKQCQDVVNQLCRQGMSAMVLNSDLEQRERDEVLTLFANRSLSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L++VI+AELS  P+  +HR GRTGRAG KG+++ ++     RRA  + 
Sbjct: 299 TDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAMAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + W P  S++  RE D    LQ P     I    K  + 
Sbjct: 359 ELQGAPLNWHPVSSLKP-REGDT---LQPPTITLCIGAGRKDKLR 399



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                      +    +  G K K     ++  L   +GI    +G I V     +V + 
Sbjct: 374 KPREGDTLQPPTITLCIGAGRKDKLRPGDILGALTGDAGIAGNKVGKITVTDYQAYVAID 433

Query: 515 ADGVD----LLRRTVKLDKGIQLKYL 536
            D  D     L +     K  ++K L
Sbjct: 434 RDSADLALERLLKGKIKGKNRRVKKL 459


>gi|75061727|sp|Q5R7D1|DDX42_PONAB RecName: Full=ATP-dependent RNA helicase DDX42; AltName: Full=DEAD
           box protein 42
 gi|55731230|emb|CAH92329.1| hypothetical protein [Pongo abelii]
          Length = 942

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|327443709|gb|EGE90363.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
          Length = 560

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKPRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 409 TRWKLINKALNLELSE 424


>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
 gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
          Length = 605

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 220/443 (49%), Gaps = 11/443 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A    GY + T +Q A++   L  +D+   A TGSGKT AF L     +L  
Sbjct: 156 NLSRPLVKACGALGYASPTPIQAAVVPLALTGRDICGRAVTGSGKTAAFMLPCLERMLHR 215

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +  P +A   L + PTRELAVQV +  E L   T V  A+ +GG+S + +   L++  
Sbjct: 216 GPK--PVAATHVLVLVPTRELAVQVHQMTERLAQFTSVRAALVVGGLSANVQATSLRSRP 273

Query: 126 HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +VV TPGRL DH+R         L  +VLDEAD +L++GF ++I  I+   PK+R+ ++
Sbjct: 274 EVVVATPGRLIDHVRNTHSVGLEDLATLVLDEADRLLEMGFLEEIREIVRHCPKRRQTML 333

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT++  +  LA+   K+  R++          +    + +       ++  ++ I+  
Sbjct: 334 FSATLTSGVEELAEFSMKNPARLSADQIGTTPGTLTEEVLRLRPGAAAMKEAHLLAIVAR 393

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K  I+F  T+    R   ++  H  +   L G+L+Q +R  AL+  R G A   +AT
Sbjct: 394 TFTKRCIIFSRTKQQAHRLKIIMGIHGLKACELHGDLTQTQRLAALEEFRTGEATHMVAT 453

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ V+  +      + LHR GRT RAGRKG ++  + ++ ++  + + +
Sbjct: 454 DVAARGLDIAGVDAVVSYDAPRTLASYLHRVGRTARAGRKGTALTFMEESDRKLIKAVSK 513

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +V    P+   + E    +I      +  ++ +E+   +  LA+ + E I A  L
Sbjct: 514 R-GSKLVARSLPT--HVVEDFHAKIEGMGEAIKEVEMEER--AEKHLARAEMEAIKAENL 568

Query: 422 RIHRAGLCAPEEITPVSLVSGRD 444
             H+  + +  + T       + 
Sbjct: 569 MEHQKEIHSRPQKTWFQSEREKK 591


>gi|206725493|ref|NP_001126368.1| ATP-dependent RNA helicase DDX42 [Pongo abelii]
          Length = 942

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 260 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK 319

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 320 E-LEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 378

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 379 IVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 438

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     ++         +      +  +
Sbjct: 439 ATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSS 498

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 499 GSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 615


>gi|167913398|ref|ZP_02500489.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 112]
          Length = 465

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|254176272|ref|ZP_04882930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
 gi|160697314|gb|EDP87284.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei ATCC 10399]
          Length = 476

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 26  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 83  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 140 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 200 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 259 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 319 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 378

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 379 EVEWHPLAELKA 390



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 389 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 448

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 449 RGIARDALRKLNAGKIKGKRVKVRLMD 475


>gi|126323567|ref|XP_001370574.1| PREDICTED: similar to R27090_2 [Monodelphis domestica]
          Length = 491

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 121/454 (26%), Positives = 201/454 (44%), Gaps = 27/454 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +   +     + G  + T VQ+  +   L  +D +  A+TGSGKT AF L +
Sbjct: 1   MAEFAKLGLASWLVAQCRQLGLKHPTPVQQNCVPAILEGRDCMGCAKTGSGKTAAFVLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTRELA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------FGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISH----LKAVVLDEADEMLDLGFRDDIEFILD 174
            +L    H+V+ TPGRL DH+R            L     D   E     F  D+E I D
Sbjct: 115 LELSRKPHVVIATPGRLADHLRSSNTFNIKKIRFLVMDEADRLLEQGCTDFTKDLEVIFD 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           ++P +R+ L+FSAT++  +  L              +E R    +D R +LV    +D  
Sbjct: 175 AAPAQRQTLLFSATLTDTLKVLQGIATNKPFFWEAPAEVRTVEQLDQRYLLVPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F ST  +      +L    F  VAL   + Q+ R  AL   
Sbjct: 235 LVHLIQTFQDEHEDWSIIIFTSTCKTCQVLNMMLRRFNFPSVALHSMMKQKARFAALAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    R+ IATDVA+RG+D+P +++VI+      P+  +HR GRT RAGR G+++ ++ Q
Sbjct: 295 KSSVYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRDGIAITLVTQ 354

Query: 351 NMQRRAERLFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                   +  E  + +     E A  ++ + + +  R  +  + L++   DEKK ++  
Sbjct: 355 YDIHLLHAIEEEIKMKLKDFSVEEATVLKILTQVNVVR-RECEIKLEATDFDEKKEINKR 413

Query: 408 ----LAKHDPEKIA---AGFLRIHRAGLCAPEEI 434
               L   DP+  A   A   +I +      E++
Sbjct: 414 KQLILEGKDPDLEAKRKAELAKIRQKNRQFKEQV 447


>gi|76584014|gb|ABA53488.1| ATP-independent RNA helicase [Burkholderia pseudomallei 1710b]
          Length = 505

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 55  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 112 ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 168

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 169 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 228

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 229 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 287

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 288 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 347

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 348 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 407

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 408 EVEWHPLAELKA 419



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 418 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 477

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 478 RGIARDALRKLNAGKIKGKRVKVRLMD 504


>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
          Length = 687

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/377 (28%), Positives = 175/377 (46%), Gaps = 14/377 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA- 64
           N+P+ I E +++  Y   T VQ+  +      +D++  AQTGSGKT AF L + + +   
Sbjct: 237 NLPETIRENVNKARYTKPTPVQKYSIPIINAGRDLMACAQTGSGKTAAFLLPVLAGIFRS 296

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + D FS    P A+ + PTREL  Q+  E       + V   V  GG SV  + RDL 
Sbjct: 297 GLKADSFSEKQTPQAIVVGPTRELVSQIFTEARKFARNSVVQPVVAYGGTSVQSQLRDLS 356

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G +I++ TPGRL D I    +    ++ ++LDEAD MLD+GF  +I  +L S     + 
Sbjct: 357 RGCNILIATPGRLLDFINRGKVGCDCVEYLILDEADRMLDMGFEPEIRKLLGSPGMPDKN 416

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRDN--AI 235
              +   S       +    + +R +             SD+    + V  +D+      
Sbjct: 417 SRHTLMFSATFPDEIQKLAHEFMREDFLFLTVGRVGGACSDVTQTLLQVENADKREKLME 476

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +     A   +VF  T+ +       L++      ++ G+  Q+ER  AL   + G+ 
Sbjct: 477 LLVDVPETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQREREIALTDFKKGKC 536

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---- 351
            + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G +      +    
Sbjct: 537 PILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGSATSFYSDDKNAA 596

Query: 352 MQRRAERLFREANVSVV 368
           + R   ++  +A   V 
Sbjct: 597 LARSLVKVLSDAQQEVP 613


>gi|124381735|ref|YP_001025050.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10229]
 gi|126447168|ref|YP_001079394.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei NCTC 10247]
 gi|254356161|ref|ZP_04972438.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|126240022|gb|ABO03134.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10247]
 gi|148025144|gb|EDK83313.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei 2002721280]
 gi|261826475|gb|ABN00540.2| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei NCTC 10229]
          Length = 463

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
             GG            +  G K K     ++  L   +G +   IG I V    T+V V 
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 515 ADGVDLLRRTVKLD--KGIQLKY 535
                   R +     KG ++K 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKV 460


>gi|53721181|ref|YP_110166.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei K96243]
 gi|121596589|ref|YP_990560.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126458103|ref|YP_001074245.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1106a]
 gi|162210105|ref|YP_336816.2| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 1710b]
 gi|166999117|ref|ZP_02264963.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|167722070|ref|ZP_02405306.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei DM98]
 gi|167741069|ref|ZP_02413843.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 14]
 gi|167818249|ref|ZP_02449929.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 91]
 gi|167826638|ref|ZP_02458109.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 9]
 gi|167848158|ref|ZP_02473666.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei B7210]
 gi|217422828|ref|ZP_03454330.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|226198779|ref|ZP_03794343.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242313771|ref|ZP_04812788.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|254182850|ref|ZP_04889443.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|254189582|ref|ZP_04896092.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264638|ref|ZP_04955503.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
 gi|254299641|ref|ZP_04967090.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|52211595|emb|CAH37590.1| ATP-independent RNA helicase [Burkholderia pseudomallei K96243]
 gi|121224387|gb|ABM47918.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei SAVP1]
 gi|126231871|gb|ABN95284.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106a]
 gi|157809522|gb|EDO86692.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei 406e]
 gi|157937260|gb|EDO92930.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           pseudomallei Pasteur 52237]
 gi|184213384|gb|EDU10427.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1655]
 gi|217393736|gb|EEC33756.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 576]
 gi|225929219|gb|EEH25242.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei Pakistan 9]
 gi|242137010|gb|EES23413.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1106b]
 gi|243064681|gb|EES46867.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei PRL-20]
 gi|254215640|gb|EET05025.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 1710a]
          Length = 465

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|325697687|gb|EGD39572.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK160]
          Length = 447

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  AL  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQALITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|296198571|ref|XP_002746771.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Callithrix
           jacchus]
          Length = 637

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/401 (27%), Positives = 186/401 (46%), Gaps = 8/401 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E + + G+   T +Q       L+  D++  AQTG+GKT+ + +     L  +   
Sbjct: 240 PEVMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLDLQPTF 299

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               + P  L + PTRELA+QV  E    Y+  G+      GG +   +  +L+ G  I+
Sbjct: 300 KGQRNRPGMLVLTPTRELALQVEGEC-CKYSYKGLRSVCVYGGGNRDEQIEELRKGVDII 358

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D      +N+ ++  +VLDEAD MLD+GF   I  IL      R+ +M SAT
Sbjct: 359 IATPGRLNDFQMNNFVNLKNITYLVLDEADRMLDMGFEPQIMKILLDVRPDRQTVMTSAT 418

Query: 189 ISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY-HGAKN 246
                        ++  +      +    S +    ++    ++   I   L+       
Sbjct: 419 WPRSVHRLAQSYLKEPMLVYVGTLDLVAVSSVKQNIIITTEEEKWIHIQTFLQSLSTTDK 478

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF S +A     +  L      + +L G+  Q++R  AL+  + G+ R+ IATD+A+R
Sbjct: 479 VIVFVSRKAVADHLSSELILGNMSIESLHGDREQRDREKALENFKTGKVRILIATDLASR 538

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREA 363
           G+D+ D+  V + +   N E  +HR GRTGRAGR G+S+  + +N  R A     + + A
Sbjct: 539 GLDVHDITHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTMTRNDWRFAPELVNILQRA 598

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           N  +  +     E  + R  +R ++  +  +  QG  KK  
Sbjct: 599 NQIIPDDLLSMAERFKARQQKREMERKM--EKPQGRPKKFH 637


>gi|170768852|ref|ZP_02903305.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
 gi|170122400|gb|EDS91331.1| ATP-independent RNA helicase DbpA [Escherichia albertii TW07627]
          Length = 457

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 196/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLANLNELGYLTMTPVQAAALPAILAGRDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHVDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   + +  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVTLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++ + + I +               +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRNPLAIEIDTTEALPPIEQQFYE-TSAQGKIPLLK 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     +AL G+L Q+ER   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVYDALNEAGQSALALHGDLEQRERDQTLVRFSNGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W+  P+  A+   +A+
Sbjct: 354 NILSDMLQIKLNWQTPPASSAVVPLEAE 381



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSDMLQIKLNWQTPPASSAVVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G+    IG I + P   +V V         R
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLEGADIGKIVIHPAHAYVAVRQAVAHKAWR 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQSGK 445


>gi|322384584|ref|ZP_08058264.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150639|gb|EFX44116.1| ATP-dependent RNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 418

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 192/370 (51%), Gaps = 12/370 (3%)

Query: 1   MKI-FENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           MK+ FE +   +   E L+  G    T +QE  +   L  +DV+  + TGSGKT+A+ L 
Sbjct: 1   MKLSFEQLHVDVSYVETLTRMGITEPTPIQEEAIPALLSGQDVIAQSATGSGKTLAYVLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               +  ++           + I PTREL +Q+ +  + L     + +   IGG S+ R+
Sbjct: 61  ALHNIDPDDKHV------QVMIIVPTRELGMQIVQVAQKLTEGGSIRIQPLIGGASLSRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+   H+VVGTPGR+ + I+ + L +  +K V++DE D++ +LG   ++  +L +  
Sbjct: 115 VDKLKERPHMVVGTPGRIKELIQMRKLTVHFVKTVIVDEVDQVFELGNMQEVGAVLKTML 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K +++  FSAT+ P I   A+ + +D ++V       +    ++  V+    D+ + +  
Sbjct: 175 KSKQVAFFSATMPPRILETAERWMQDPIKV---QIKLKQPAHEHLYVVCEERDKVDMLRR 231

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R++  + AIVF +    +      L      + AL G+  +QER+  +Q  R+ + ++
Sbjct: 232 LVRHYNPRAAIVFINDTDDIGEVLAKLQYVGLSIAALYGDSGKQERAKVMQDFRNNKFQL 291

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +  VI+ +   + ++ +HR GRTGR GRKG ++ ++        E
Sbjct: 292 LLATDVAARGLDIEGVSHVINLDPPLDADHYVHRIGRTGRMGRKGTAISIVTPKQTFIME 351

Query: 358 RLFREANVSV 367
           +  +  +V  
Sbjct: 352 KFSQSLHVQF 361


>gi|296104251|ref|YP_003614397.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058710|gb|ADF63448.1| ATP-dependent RNA helicase SrmB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 442

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 183/372 (49%), Gaps = 6/372 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + +  AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +
Sbjct: 3   VTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L A T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + + ++FSAT           +  +         S   +     +      L  +   + 
Sbjct: 181 RNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A   IVF   R  V    ++L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQIKRTEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ERLFREANVSVV 368
           +++ R  +  + 
Sbjct: 361 QKIGRYIDEPLK 372


>gi|221482438|gb|EEE20786.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
          Length = 1544

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 206/485 (42%), Gaps = 21/485 (4%)

Query: 2    KIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+  +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L  
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 61   TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +L+   +       +AL IAPTREL  Q+ +E+        +    C GG  +  +   
Sbjct: 1034 HVLSVKQQ-DFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGA 1092

Query: 121  LQNGAHIVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++ G  ++VGTP     +     G+  ++  +  +VLDEAD M D GF   +  I+ SS 
Sbjct: 1093 IKRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSR 1152

Query: 178  KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              R+  +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ 
Sbjct: 1153 PDRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQ 1212

Query: 238  ILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       + I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   
Sbjct: 1213 LLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 297  VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            + IAT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 357  ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + L +    S    P    +A+ +  AQ   +  L +   +                   
Sbjct: 1333 DDLEKALTQSGQAVP----QALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFS---- 1384

Query: 417  AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A+   R  R    A +E+         +    D  A +   G   + +         G  
Sbjct: 1385 ASEKSRQQRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGDREPE-------GRG 1437

Query: 477  QKAEA 481
               + 
Sbjct: 1438 AAVDP 1442


>gi|114669836|ref|XP_001147439.1| PREDICTED: DEAD box polypeptide 42 protein isoform 2 [Pan
           troglodytes]
 gi|114669838|ref|XP_001147515.1| PREDICTED: DEAD box polypeptide 42 protein isoform 3 [Pan
           troglodytes]
          Length = 674

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   
Sbjct: 4   IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDG 62

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGR
Sbjct: 63  PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGR 122

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I 
Sbjct: 123 LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIE 182

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCS 252
            LA++   D +RV        + D+     ++         +      +  + + ++F +
Sbjct: 183 KLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVT 242

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +A+       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P 
Sbjct: 243 KKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPS 302

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 303 IKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 351


>gi|183600257|ref|ZP_02961750.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
 gi|188020045|gb|EDU58085.1| hypothetical protein PROSTU_03809 [Providencia stuartii ATCC 25827]
          Length = 428

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALNKKGFNFCTPIQASTLPFTVEGKDVAGQAQTGTGKTLAFLTSTF 68

Query: 60  STLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL          + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + 
Sbjct: 69  HYLLTHPSIEGKKVNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQNG  I++GT GRL D+ +   ++++ ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLQNGVDILIGTTGRLIDYAKQGHIDLNAVQVVVLDEADRMYDLGFIKDIRWLFRRMPA 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               L   FSAT+S  +  LA         + +    +    I       +  ++   + 
Sbjct: 189 VTERLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDEIWAHLAADGHRVGLLTGDVAQKKRLRILEEFTQGNLD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +      S+ 
Sbjct: 369 PAIEEYIQHSIP 380


>gi|168486746|ref|ZP_02711254.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570245|gb|EDT90773.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1087-00]
          Length = 447

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 200/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I    PK  
Sbjct: 119 ESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|325103790|ref|YP_004273444.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
 gi|324972638|gb|ADY51622.1| DEAD/DEAH box helicase domain protein [Pedobacter saltans DSM
           12145]
          Length = 372

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 199/371 (53%), Gaps = 11/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLAL 58
             F ++   +   +AL E   +  T +Q+  +   L+  KD +  AQTG+GKT AFGL +
Sbjct: 3   NTFRDLGISEQFIQALEENNIIKPTEIQKLAIPYLLKEGKDFIGQAQTGTGKTAAFGLPV 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHR 116
              + A +           L + PTREL  Q+ ++L      +   +      GG  +  
Sbjct: 63  LEQIDANSKVI------QVLILCPTRELGQQIAKQLFKFTKYSDKKIFTEAVYGGEKIDI 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+   HIVV TPGRL D +  K +N+ H+K ++LDEADEML +GF+ DI+ IL+ +
Sbjct: 117 QIGRLKRPTHIVVATPGRLIDLLERKAINLDHVKTIILDEADEMLSMGFKKDIDKILEYT 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +R   +FSATI  A+  + K+Y  +  +V I  E   + +ID++ ++V L D+ + + 
Sbjct: 177 NGQRYTWLFSATIPAALDDIIKSYMDEPFKVEIRKEQLVNENIDHKYMVVDLKDKLDLLS 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +     IVFC T+ +    +K L    F+V A+ G++ Q++R   ++  +  R  
Sbjct: 237 RFLKENSKARGIVFCRTKKNAELLSKQLYARNFKVEAIHGDMGQRDREKVMRAFKSERLP 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD++ARGID+ +L  VIH +L    E   HRSGRT R GRKG+S+  I  N   + 
Sbjct: 297 ILIATDISARGIDVQNLNYVIHYDLPDQMEYYTHRSGRTARGGRKGLSLIFIAPNDIDKV 356

Query: 357 ERLFREANVSV 367
           + L    N+ +
Sbjct: 357 KDLEANLNIKI 367


>gi|16765963|ref|NP_461578.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62181218|ref|YP_217635.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161612638|ref|YP_001586603.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167553669|ref|ZP_02347416.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994856|ref|ZP_02575946.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232171|ref|ZP_02657229.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238338|ref|ZP_02663396.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168245094|ref|ZP_02670026.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261356|ref|ZP_02683329.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168468057|ref|ZP_02701894.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823169|ref|ZP_02835169.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444674|ref|YP_002041910.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451369|ref|YP_002046652.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469312|ref|ZP_03075296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736243|ref|YP_002115655.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197251182|ref|YP_002147547.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263960|ref|ZP_03164034.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198245924|ref|YP_002216658.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389167|ref|ZP_03215779.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929439|ref|ZP_03220513.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353686|ref|YP_002227487.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857997|ref|YP_002244648.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584498|ref|YP_002638296.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912708|ref|ZP_04656545.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421193|gb|AAL21537.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62128851|gb|AAX66554.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362002|gb|ABX65770.1| hypothetical protein SPAB_00333 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403337|gb|ACF63559.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409673|gb|ACF69892.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455676|gb|EDX44515.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711745|gb|ACF90966.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195628861|gb|EDX48275.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214885|gb|ACH52282.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242215|gb|EDY24835.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288867|gb|EDY28240.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940440|gb|ACH77773.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199606265|gb|EDZ04810.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321158|gb|EDZ06358.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273467|emb|CAR38444.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205321947|gb|EDZ09786.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327350|gb|EDZ14114.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333649|gb|EDZ20413.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336132|gb|EDZ22896.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340544|gb|EDZ27308.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349536|gb|EDZ36167.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709800|emb|CAR34152.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469025|gb|ACN46855.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247841|emb|CBG25670.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994784|gb|ACY89669.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159194|emb|CBW18709.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913637|dbj|BAJ37611.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320085536|emb|CBY95315.1| ATP-dependent RNA helicase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225998|gb|EFX51051.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613360|gb|EFY10302.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620436|gb|EFY17301.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625096|gb|EFY21925.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629460|gb|EFY26236.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633847|gb|EFY30586.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635453|gb|EFY32164.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639871|gb|EFY36550.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644243|gb|EFY40787.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649935|gb|EFY46355.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654882|gb|EFY51199.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658190|gb|EFY54456.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661738|gb|EFY57956.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669719|gb|EFY65865.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673274|gb|EFY69379.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674937|gb|EFY71024.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682960|gb|EFY78978.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685621|gb|EFY81616.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715706|gb|EFZ07277.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130981|gb|ADX18411.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323191951|gb|EFZ77189.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200416|gb|EFZ85497.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201315|gb|EFZ86382.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208386|gb|EFZ93326.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211538|gb|EFZ96376.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215970|gb|EGA00702.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221751|gb|EGA06159.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225641|gb|EGA09868.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229359|gb|EGA13483.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235326|gb|EGA19410.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237488|gb|EGA21551.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245243|gb|EGA29244.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246468|gb|EGA30449.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254001|gb|EGA37823.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259051|gb|EGA42699.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261974|gb|EGA45539.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267757|gb|EGA51238.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269684|gb|EGA53136.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624414|gb|EGE30759.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628791|gb|EGE35134.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989572|gb|AEF08555.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 444

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|297478376|ref|XP_002690065.1| PREDICTED: rCG25924-like [Bos taurus]
 gi|296484278|gb|DAA26393.1| rCG25924-like [Bos taurus]
          Length = 643

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 191/387 (49%), Gaps = 10/387 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F   P+ +   + + G+   T +Q       L+  D++  AQTG+GKT+++ +     + 
Sbjct: 244 FHCYPE-VMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHID 302

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG     + +DL  
Sbjct: 303 SQP---VARNGPGMLVLTPTRELALQVDAECSE-YSYRGLKSVCIYGGGDRDGQIKDLSK 358

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I++ TPGRL D      + +  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 359 GADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTV 418

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++ + I   +   
Sbjct: 419 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSM 478

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  I+F S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 479 SPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIAT 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ +I +N  + A     
Sbjct: 539 DLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELIN 598

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +   AN SV  +     E  +    ++
Sbjct: 599 ILERANQSVPEDLVSMAERYKANKLKK 625


>gi|291453994|ref|ZP_06593384.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356943|gb|EFE83845.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 469

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/379 (34%), Positives = 191/379 (50%), Gaps = 12/379 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +       EAL   G  N   +QE  L   L   DV+  A+TG+GKT+ FGL L
Sbjct: 1   MTTFRELGILSETAEALEAVGITNPFPIQELTLPVALSGTDVIGQAKTGTGKTLGFGLPL 60

Query: 59  ASTL----LAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
              +      E  R  P     AP AL + PTREL  QV  +L        V V    GG
Sbjct: 61  LERVTVAADVEAGRAKPEQLTTAPQALVVVPTRELCQQVTNDLLTAGKVRDVRVLAIYGG 120

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            +   +   L  G  ++VGTPGRL D    + L++ H+KA+VLDEADEMLDLGF  D+E 
Sbjct: 121 RAYEPQVEALNKGVDVIVGTPGRLLDLAGQRKLDLGHVKALVLDEADEMLDLGFLPDVER 180

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVAL 228
           I+   P KR+ ++FSAT+  A+  LA+ Y      +   S +      ++I         
Sbjct: 181 IVTMLPAKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPDDEGATVANIAQHVFRAHS 240

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            D+   +  IL+  G   A++FC T+ + +   + L    F   A+ G+L Q  R  AL+
Sbjct: 241 MDKPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLQRRGFASGAVHGDLGQGAREQALR 300

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAGR G+++ ++
Sbjct: 301 AFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRAGIAITLV 360

Query: 349 PQNMQRRAERLFREANVSV 367
             +   R + + +   ++ 
Sbjct: 361 DWDDIPRWQLINKALELTF 379


>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
 gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
          Length = 383

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 194/371 (52%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   T   +V +  G     +++ 
Sbjct: 65  LLTNPVQEQRFRGEPRALILAPTRELALQIESDAQHLTKFTDLHLVTLLGGVDFEKQKKM 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP K
Sbjct: 125 LDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPFK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +V   D+   +  
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYVVENKDKYKLLQE 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKNNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVINFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|15827355|ref|NP_301618.1| ATP-dependent RNA helicase [Mycobacterium leprae TN]
 gi|221229833|ref|YP_002503249.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
 gi|13092904|emb|CAC30321.1| putative ATP-dependent RNA helicase [Mycobacterium leprae]
 gi|219932940|emb|CAR70906.1| putative ATP-dependent RNA helicase [Mycobacterium leprae Br4923]
          Length = 544

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/366 (35%), Positives = 179/366 (48%), Gaps = 9/366 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL+ERG     ++QE  L   L   DV+  A+TG GKT AFG+ L   +      
Sbjct: 41  DEIVRALAERGIQQPFAIQELTLPLALAGDDVIGQARTGMGKTFAFGVPLLQRISVTTTA 100

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT-------GVVVAVCIGGVSVHRERRDL 121
              + AP  L + PTREL +QV  +L  +              V    GG +   +   L
Sbjct: 101 RPLSGAPRGLVVVPTRELCLQVADDLATVAKYLTADDDNRRFSVVSIYGGRAYEPQIEAL 160

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +VV TPGRL D  +   L +S L  +VLDEADEMLDLGF  DIE +L   P  R+
Sbjct: 161 QTGADVVVSTPGRLLDLCQQGHLQLSGLSVLVLDEADEMLDLGFFPDIERLLGQIPTDRQ 220

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT+   I T       Q   +R         H             D+   I  IL
Sbjct: 221 SMLFSATMPDPIITLARTFMDQPIHIRAEAPHSLAVHDTTQQFVYRAHALDKVELISRIL 280

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    ++F  T+ +  + T  L E  F V A+ G+L Q  R NAL+  R G   V +
Sbjct: 281 QARGRGATMIFTRTKRTAQKVTNELNERGFAVGAVHGDLGQIARENALEAFRTGNVDVLV 340

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +   R E +
Sbjct: 341 ATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELHRWETI 400

Query: 360 FREANV 365
            +   +
Sbjct: 401 DKALGL 406


>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 193/378 (51%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L E G      +Q A L   L  +DVL   +TGSGKT+AFGL L        
Sbjct: 33  LPAPVLRTLGEHGVREPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR---TA 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + A  PLAL + PTRELA QV   L       G+ +A  +GG+S+ R+   L++GA 
Sbjct: 90  GQRAEAKQPLALILVPTRELAQQVSEALAPYAEALGLRMAAVVGGMSIGRQIAALRDGAE 149

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  K   +  ++  VLDEAD+M DLGF   +  +LD    + + ++FS
Sbjct: 150 VVVATPGRLHDLVERKACRLGRVRITVLDEADQMCDLGFLPQVTEVLDQVRPEGQRMLFS 209

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  D V  ++       + +D+  ++V   DR    V          
Sbjct: 210 ATLDRDVDQLVSRYLHDPVVHSVDPSAGAVTTMDHHVLVVHGPDRYA--VTTEIAARDGR 267

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAAR
Sbjct: 268 VLLFLDTKHGVDQLTRHLRGSGVHAAALHSGKSQPQRTRTLAQFKNGQVTVLVATNVAAR 327

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ + DL+LV++ +  ++ ++ LHR+GRT RAG  G  V ++    +R   RL  EA + 
Sbjct: 328 GLHVDDLDLVVNVDPPTDAKDYLHRAGRTARAGESGRVVTLVLSGQRRETSRLMAEAGIE 387

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P+V  +R  +A+
Sbjct: 388 ------PTVTKVRSGEAE 399


>gi|163915660|gb|AAI57684.1| LOC100135374 protein [Xenopus (Silurana) tropicalis]
          Length = 898

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/357 (28%), Positives = 172/357 (48%), Gaps = 3/357 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 213 FDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQK 272

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 273 E-LQPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAE 331

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  N+  +  +V DEAD M D+GF   +  I +     R+ L+FS
Sbjct: 332 IVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLLFS 391

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + DI     ++         +      +   
Sbjct: 392 ATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQVVEILPSGPEKWTWLTRRLVEFTST 451

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +A+       L +    +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 452 GSVLIFVTKKANAEELANNLRQDDHPLGLLHGDMDQSERNKVISDFKKKSIPVLVATDVA 511

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARG+D+P ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 512 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAHTLLTPKDSNFAGDLVR 568


>gi|302524385|ref|ZP_07276727.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
 gi|302433280|gb|EFL05096.1| cold-shock DEAD-box protein [Streptomyces sp. AA4]
          Length = 522

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/449 (28%), Positives = 199/449 (44%), Gaps = 15/449 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +AL+E G  +  ++Q   L   +   D++  A+TG GKT+ FG+ L   +    D 
Sbjct: 3   PEIVKALAEAGIEHTFAIQALTLPLAMAGDDLIGQARTGMGKTLGFGVPLLHRVQVPGDG 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  L + PTREL +QV  +L+      G+      GG     +   L+ G  +V
Sbjct: 63  -----TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEALRKGVDVV 117

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL D    + L +  ++ +VLDEADEMLDLGF  DIE IL   P +R+ ++FSAT
Sbjct: 118 IGTPGRLLDLAEQQHLVLGKIRGLVLDEADEMLDLGFLPDIERILRMVPDERQTMLFSAT 177

Query: 189 ISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I T       Q   +R         H             D+   I   L+  G   
Sbjct: 178 MPGPIITLARTFLNQPTHIRAEENDAGAIHERTAQFVYRAHSMDKTELIARALQAEGRGL 237

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V +ATDVAAR
Sbjct: 238 TMIFSRTKRTAQKIADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDVAAR 297

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ ++  + + R + +    N+ 
Sbjct: 298 GIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAITLVDWDEEARWKLISDTLNLD 357

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD--EKKMVDVLLAKHDPEKIAAGFLRIH 424
           +  EP  +  +     +  +  D    +  +G     K     L+    E +        
Sbjct: 358 LA-EPVETYSS-----SPHLFSDLGIPEGTKGRLPLSKRTRAGLSAEKEEDLGGKRRGRR 411

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
            +    P      +        R  +R  
Sbjct: 412 GSAASGPSASDEEAPRKRNRAPRKRTRGG 440


>gi|204927708|ref|ZP_03218909.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204323050|gb|EDZ08246.1| ATP-dependent rna helicase, dead/deah box family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 457

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIHFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|302879765|ref|YP_003848329.1| DEAD/DEAH box helicase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302582554|gb|ADL56565.1| DEAD/DEAH box helicase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 484

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/406 (31%), Positives = 203/406 (50%), Gaps = 14/406 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +P    +   L + GY+ +T +Q   L   L   D++  A+TGSGKT AF L L +
Sbjct: 30  TFNELPLSPGLLSTLQQLGYLTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLT 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERR 119
            L           A  A+ + PTRELA QV +E+  L   +  + +    GG ++  +  
Sbjct: 90  RLNP------RRFAIQAMVLCPTRELADQVTQEIRRLARSEDNIKILTLCGGSTMRPQIA 143

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGR+ DH+    L +S L  +VLDEAD MLD+GF D + +++   PK 
Sbjct: 144 SLEHGAHIVVGTPGRIMDHLDRNTLELSALNTLVLDEADRMLDMGFYDSLAYVVKHCPKD 203

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT    +            +     E  + S I  R   V+  +R  A+  +L
Sbjct: 204 RQTLMFSATYPDGV-MRLARQFMRQPQQVKLEEQHEESKIRQRFYEVSNEERLAAVGTLL 262

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R++   + + FC+T+       +VL       + L+G++ Q++R   L    +    V +
Sbjct: 263 RHYRPVSTLAFCNTKQQCRSLLEVLHAQGIVALTLNGDMEQRDRDQVLIQFANRSCSVLV 322

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRAG  G ++ ++    + R   +
Sbjct: 323 ATDVAARGLDITQLEAVINVDVTPDPEVHVHRIGRTGRAGEDGWALSLVGPTERHRVISI 382

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + +     W     ++     + +  L  P+    I G  K+ + 
Sbjct: 383 AKLSGNVPEWHEIAELKD----EDEAPLVPPMVTLQILGGRKEKIR 424



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K+K     ++  L   +G  R+ +G I +    T+V V  D      R
Sbjct: 408 PPMVTLQILGGRKEKIRPGDVLGALTGDAGYTREQVGKIALTDFSTYVAVVRDIAQEAVR 467

Query: 524 TVKLD--KGIQLKY 535
            +     KG  +K 
Sbjct: 468 KLSAGKVKGKTVKV 481


>gi|237841393|ref|XP_002369994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211967658|gb|EEB02854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
          Length = 1544

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 206/485 (42%), Gaps = 21/485 (4%)

Query: 2    KIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+  +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L  
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 61   TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +L+   +       +AL IAPTREL  Q+ +E+        +    C GG  +  +   
Sbjct: 1034 HVLSVKQQ-DFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGA 1092

Query: 121  LQNGAHIVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++ G  ++VGTP     +     G+  ++  +  +VLDEAD M D GF   +  I+ SS 
Sbjct: 1093 IKRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSR 1152

Query: 178  KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              R+  +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ 
Sbjct: 1153 PDRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQ 1212

Query: 238  ILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       + I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   
Sbjct: 1213 LLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 297  VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            + IAT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 357  ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + L +    S    P    +A+ +  AQ   +  L +   +                   
Sbjct: 1333 DDLEKALTQSGQAVP----QALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFS---- 1384

Query: 417  AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A+   R  R    A +E+         +    D  A +   G   + +         G  
Sbjct: 1385 ASEKSRQQRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGDREPE-------GRG 1437

Query: 477  QKAEA 481
               + 
Sbjct: 1438 AAVDP 1442


>gi|159469622|ref|XP_001692962.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
 gi|158277764|gb|EDP03531.1| DEAD box RNA helicase [Chlamydomonas reinhardtii]
          Length = 407

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/380 (32%), Positives = 204/380 (53%), Gaps = 11/380 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPASA 74
           + R +V  + +Q       L  +D++  A TGSGKT+ FGL +   + A+ +        
Sbjct: 4   ATRNFVAPSPIQAQCWPIILAGRDLIGIAATGSGKTLGFGLPMLRHIAAQREAGVVTGKG 63

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P A+ +APTRELA+Q+   LE   +K GV      GGV  H + + L++G  +VVGTPGR
Sbjct: 64  PFAVVMAPTRELALQINEVLEEAGSKCGVRTVCVYGGVPKHPQIQALRSGVEVVVGTPGR 123

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + D +    L ++ +   VLDEAD MLDLGF   I  I++ +   R+ LMFSAT   A+ 
Sbjct: 124 MEDLLNDGALKLNQITYAVLDEADRMLDLGFEPHIRAIMNLTRADRQTLMFSATWPTAVQ 183

Query: 195 TLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA-----KNAI 248
            LA  +    V+V I S++      I     ++    RD  ++++L+ +          I
Sbjct: 184 KLAVAFLSHPVKVTIGSQDLAASHSITQHVEVIEPHARDGRLLDLLQQYHGAKGRKNRVI 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F   +    R  ++L    ++  A+ G++SQQ+R++A++  + G   + IATDVAARG+
Sbjct: 244 IFVLYKKEAPRVEQLLTRKGWKAGAIHGDISQQQRTDAVEKFKSGAVPLLIATDVAARGL 303

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERL---FREAN 364
           D+PD+E+VI+       E+ +HR GRTGRAG+ G++  F      + RA  L    REA 
Sbjct: 304 DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKTGVAYTFFCAGPDKPRAGELINVLREAG 363

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
             V  +      A+++++++
Sbjct: 364 QEVPADLLKFGTAVKKKESK 383


>gi|326913476|ref|XP_003203064.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like [Meleagris
           gallopavo]
          Length = 695

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 215 IESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 274

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 275 LSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSRVRPC 334

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 335 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 394

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 395 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 454

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 455 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 514

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 515 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 574

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 575 GLATSFFNERNINITKDLLDLLVEAKQEVP 604


>gi|258624240|ref|ZP_05719189.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
 gi|258583391|gb|EEW08191.1| ATP-dependent RNA helicase, DEAD box family [Vibrio mimicus VM603]
          Length = 452

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 188/420 (44%), Gaps = 9/420 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + + PTRELA QV  EL  +         +  GG + + + + L     
Sbjct: 70  TKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 369

Query: 364 NVSVVWEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
              + +E    +    + ++ R A +       ++  +   K        K   + +A G
Sbjct: 370 QQEIQFEVLDGLAGKFKGLKPRQATKKTAPSKRVEKAKAPAKAKKPASRDKSFYQNVAVG 429


>gi|302920275|ref|XP_003053036.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733976|gb|EEU47323.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 621

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/395 (27%), Positives = 182/395 (46%), Gaps = 29/395 (7%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +  V+ E ++  GY N T +Q+  +   L+  DV+  AQTGSGKT A+ + + S
Sbjct: 122 TFKDAGLHPVMLENVNLCGYDNPTPIQKFTIPSILQGHDVIGIAQTGSGKTAAYLIPILS 181

Query: 61  TLLAENDRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            L+ +  + + A                 PL L I PTRELA+Q+  E      +T +  
Sbjct: 182 KLMGKAKKLAAARPNPLTFREGLDEVTAEPLVLIIVPTRELAIQIFNEARKFCYRTMLRP 241

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLG 164
            V  GGV +  +   L  G  ++VGTPGRL D I+         L+ +V+DEADE+LDL 
Sbjct: 242 GVVYGGVPIREQIGLLGKGCDVLVGTPGRLVDFIQRPKYLTLRRLRYMVIDEADELLDLD 301

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD----AVRVNIASENRQHSDID 220
           + +DI+ IL    +    + FS   +    +     +       VR  +       ++I 
Sbjct: 302 WNEDIDKILSGGEQDEGNVKFSLFSATFPKSARDLAKNYLAASHVRFRVGRAGSTTANIK 361

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +     ++ + ++ +L        I+F ++R +       L      V ++  + +Q
Sbjct: 362 QIVLPAEPHEKRDILLGLLEEMHGVRTIIFVNSRQAADNLDDFLYNMKLPVTSIHSDRTQ 421

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTG 336
           QER  A++  R G A + IAT V+ARGID+ ++  VI+ +L S      E   HR GRTG
Sbjct: 422 QEREAAMRSFRSGNAPILIATGVSARGIDVRNVVHVINYDLPSMDHGGIEEYTHRIGRTG 481

Query: 337 RAGRKGMSVFVIPQNMQRR---AERLFREANVSVV 368
           R G +G++     +  +       R   E N  + 
Sbjct: 482 RIGHRGIATSFFTERDEGMGSVLTRTLLETNQEIP 516


>gi|253771018|gb|ACT35657.1| vasa-like protein [Haliotis asinina]
          Length = 763

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 191/382 (50%), Gaps = 13/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   +     + + +  Y   T VQ+  +      +D++  AQTGSGKT AF L  
Sbjct: 306 ITSFDEAGLYPTFLKNVRKAKYEKPTPVQKYSIPIIAAGRDLMACAQTGSGKTAAFLLPT 365

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++ E     +FS    P A+ +APTREL VQ+  +       T V   V  GG SV 
Sbjct: 366 LTCMVKEGLTTSQFSEVQEPQAIIVAPTRELVVQIHSDARKFSRGTEVRPVVVYGGTSVG 425

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R+++ GAH+VVGTPGRL D I    + +  +K ++LDEAD MLD+GF   I  +++ 
Sbjct: 426 HQLREVERGAHVVVGTPGRLLDFIEKGKIGLGKVKFLILDEADRMLDMGFEPCIRKLVEQ 485

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                +      MFSAT    I  LA ++  D + + +      ++D++     V    +
Sbjct: 486 LGMPPKTQRQTLMFSATFPTEIQKLAADFLNDYLFLTVGRVGGANTDVEQNFFEVDRLQK 545

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + +IL   G+   +VF   + +       L++  F   ++ G+  Q+ER  AL+  +
Sbjct: 546 REKLCSILTESGSDKTLVFVEQKRNADFLASYLSQSGFPTTSIHGDRLQREREEALRDFK 605

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G A + IAT VAARG+D+P+++ V++ +L S+ +  +HR GRTGR G  G +      +
Sbjct: 606 RGTAPILIATSVAARGLDIPEVKHVVNYDLPSSIDEYVHRIGRTGRCGNLGKATSFYSHD 665

Query: 352 ----MQRRAERLFREANVSVVW 369
               + +   R+  EA+  V  
Sbjct: 666 SDSALVKSLVRILTEAHQIVPE 687


>gi|262173166|ref|ZP_06040843.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
 gi|261890524|gb|EEY36511.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
          Length = 448

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 188/420 (44%), Gaps = 9/420 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + + PTRELA QV  EL  +         +  GG + + + + L     
Sbjct: 66  TKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365

Query: 364 NVSVVWEPAPSV----EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
              + +E    +    + ++ R A +       ++  +   K        K   + +A G
Sbjct: 366 QQEIQFEVLDGLAGKFKGLKPRQATKKTAPSKRVEKAKAPAKAKKPASRDKSFYQNVAVG 425


>gi|225856436|ref|YP_002737947.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
 gi|225725948|gb|ACO21800.1| ATP-dependent RNA helicase [Streptococcus pneumoniae P1031]
          Length = 447

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/462 (25%), Positives = 202/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I DS PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIADSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 SMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|224551506|gb|ACN54195.1| Ddx3y [Bos taurus]
          Length = 635

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V+  
Sbjct: 239 LSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVP 568


>gi|118362432|ref|XP_001014443.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89296210|gb|EAR94198.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 420

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 172/375 (45%), Gaps = 12/375 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  +   +   + E+G+   + VQE  +   +    ++  A+ G+GKT +F + + 
Sbjct: 45  TDFEDYGLKIELLRGIVEKGWDKPSPVQEETIPLTIAGSSIIARAKNGTGKTASFVIPIL 104

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER- 118
             L       +  +   +L + PTRELA+QV    + L     V V V  GG S   +  
Sbjct: 105 EQLD------TTKNFIQSLILVPTRELALQVSSVAKELGKYLNVNVMVSTGGTSFKEDVL 158

Query: 119 --RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             ++ ++  HI+V TPGR+ D  +    N+S  + + LDEAD++L   F   IE IL+  
Sbjct: 159 RLQNKESPVHIIVATPGRILDLAKKNIANLSQCQIIALDEADKLLSQDFVLIIEEILEFL 218

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R++++FSAT   ++    + +  D   VN+  E             +    +   + 
Sbjct: 219 KKDRQIMLFSATFPNSVKQFKEKHMADCKTVNMMDELTLKGV-TQYYAYLEEKLKVQCLN 277

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++        AI+FC++   V      + E  +    +  ++ Q  R+        G+ R
Sbjct: 278 HLAAKLQINQAIIFCNSTKRVELLANKIIEQGYSCFYIHAKMEQHHRNKVFHNFTQGQGR 337

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +++D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++  I    +   
Sbjct: 338 FLVSSDLFTRGIDVQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINFITDEDKDNL 397

Query: 357 ERLFREANVSVVWEP 371
            ++  E ++ ++  P
Sbjct: 398 IKIEHELDIQMLPIP 412


>gi|62740097|gb|AAH94097.1| Unknown (protein for MGC:115016) [Xenopus laevis]
          Length = 695

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 20/380 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL------ 62
           ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S +      
Sbjct: 228 EIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPG 287

Query: 63  -----LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                L EN R+      PL+L +APTRELAVQ+  E      ++ V   V  GG  + +
Sbjct: 288 DAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ 347

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I++  
Sbjct: 348 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 407

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + +MFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 408 TMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKR 467

Query: 233 NAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R
Sbjct: 468 SFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR 527

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++     + 
Sbjct: 528 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 587

Query: 351 --NMQRRAERLFREANVSVV 368
             N+ +    L  EA   V 
Sbjct: 588 NINITKDLLDLLVEAKQEVP 607


>gi|156119497|ref|NP_001095245.1| putative ATP-dependent RNA helicase an3 [Xenopus laevis]
 gi|113825|sp|P24346|DDX3_XENLA RecName: Full=Putative ATP-dependent RNA helicase an3
 gi|65060|emb|CAA40605.1| ATP dependent RNA helicase [Xenopus laevis]
          Length = 697

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 20/380 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL------ 62
           ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S +      
Sbjct: 230 EIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPG 289

Query: 63  -----LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                L EN R+      PL+L +APTRELAVQ+  E      ++ V   V  GG  + +
Sbjct: 290 DAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ 349

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I++  
Sbjct: 350 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 409

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + +MFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 410 TMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKR 469

Query: 233 NAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL   R
Sbjct: 470 SFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQRDREEALHQFR 529

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++     + 
Sbjct: 530 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 589

Query: 351 --NMQRRAERLFREANVSVV 368
             N+ +    L  EA   V 
Sbjct: 590 NINITKDLLDLLVEAKQEVP 609


>gi|198452859|ref|XP_002137552.1| GA26479 [Drosophila pseudoobscura pseudoobscura]
 gi|198132109|gb|EDY68110.1| GA26479 [Drosophila pseudoobscura pseudoobscura]
          Length = 716

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/488 (23%), Positives = 215/488 (44%), Gaps = 24/488 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 230 VSEATLRAIKEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 287

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 288 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 347

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 348 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 407

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+          ++   ++     R   +   L+ +
Sbjct: 408 SATQTARIEALSKLALKSEPIYVGVHDDEVTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 467

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +    + + TD
Sbjct: 468 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAETGILLCTD 527

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++         R  +
Sbjct: 528 VAARGLDIPQVDWIVQYDPPDDPKEYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 586

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            A V +         +  I +   ++++    FL+      K+     +  +D  ++   
Sbjct: 587 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQ---SAKEAFKSYVRAYDSHQLKQI 642

Query: 420 F----LRIHRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGSS----WF 469
           F    L +          + PV    V    R R + R    G G       +S      
Sbjct: 643 FNVNTLDLQAVSKSFGFLVPPVVDLKVGAAKRQRPEKRVGGGGFGYYRQMNDTSASKQRH 702

Query: 470 SLSVGSKQ 477
              V   Q
Sbjct: 703 FKQVNRDQ 710


>gi|332662776|ref|YP_004445564.1| DEAD/DEAH box helicase domain-containing protein [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331590|gb|AEE48691.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 442

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/414 (30%), Positives = 202/414 (48%), Gaps = 9/414 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + G    T++Q  + +  +  KDV   AQTG+GKT A+ L         
Sbjct: 7   NLNKPLLNALQDIGISTPTTIQAKVFSVVMSGKDVCGIAQTGTGKTFAYLLPCL-----R 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L I PTREL  QV   +E L     +VV    GGV++  +   L  GA
Sbjct: 62  QYEYSKKKTPQVLIIVPTRELVTQVVEAVEKLSKYLSLVVVGVYGGVNLKPQAAQLAQGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL D +    L    LK +V+DE DEML+LGFR  ++ I DS P++R+ L+F
Sbjct: 122 DVVVGTPGRLVDLLSNGVLKTKDLKKLVIDEFDEMLNLGFRAQLKVIFDSIPERRQNLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +  L  +Y  + +R+          +ID     V       +++ +L     +
Sbjct: 182 SATLNEDVELLIADYFDNLIRIEATPVGTPLENIDQSYYPVPNFYTKVSLLKLLLTSNPE 241

Query: 246 N--AIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +VF ST++   R  +    E   ++  +    SQ  R  A+     G +RV IATD
Sbjct: 242 MSKVLVFVSTKSLADRVFEALDEEWGIKIQVIHSNKSQPFRFAAVNAFHAGESRVLIATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+ ++  VI+ ++ S PEN +HR GRTGR  RKG+++  + +  Q     + + 
Sbjct: 302 IIARGIDVAEVTHVINFDMPSVPENYIHRIGRTGRVERKGIAISFVTEKEQEYLTEIEKL 361

Query: 363 ANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            N SV     P    I ++   +   ++ +   +++   K+ V     K   + 
Sbjct: 362 MNYSVPQVELPEGLEISDQILPEEQPKEYMKTITVKTTIKQNVGPAFHKKSEKN 415


>gi|262164648|ref|ZP_06032386.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027028|gb|EEY45695.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 448

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 172/367 (46%), Gaps = 5/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q+  +   +  +D+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLAHYNFKQATEIQQQAIPLSIAGRDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + + PTRELA QV  EL  +         +  GG + + + + L     
Sbjct: 66  TKAFSAKDPRGVILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARDPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 186 SATLDHADVNDIAMEMLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLERILADAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L +   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRADTDRLTEKLNQSNLKAVALSGNLNQAQRNTIMSQFERVVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIPTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAMSLVGPKDWDSFKRVEAFL 365

Query: 364 NVSVVWE 370
              + +E
Sbjct: 366 QQEIQFE 372


>gi|194227826|ref|XP_001491482.2| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box
           protein 3, X-chromosomal) (Helicase-like protein 2)
           (HLP2) (DEAD box, X isoform) [Equus caballus]
          Length = 762

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 279 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 338

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 339 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 398

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 399 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 458

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 459 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 518

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 519 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 578

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 579 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 638

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 639 GLATSFFNERNINITKDLLDLLVEAKQEVP 668


>gi|73951336|ref|XP_850492.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 1 [Canis familiaris]
          Length = 441

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/401 (23%), Positives = 184/401 (45%), Gaps = 20/401 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 57  FEDYCLKWELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYFIPLLER 116

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRE+A+QV +  ++      G  V    GG ++  +   
Sbjct: 117 LDLKKDNI------QAMVIVPTREVALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 170

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 171 LDDTVHVVIATPGRILDVIKKGAAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    +   +  +  
Sbjct: 231 QILLYSATFPLSVQKFMNSHLRKPCEINLMEELTLKGV-TQYYAYVTERQKVLCLNTLFS 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++ +        ++   +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 290 RLQINQSIIFCNS-SQRVELLAKISLLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 348

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 349 TDLFPRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKNIE 408

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            +    +  +P PS       +  + L +  +      DEK
Sbjct: 409 EQLGTEI--KPIPS-------NIDKSLYEAEYHSEPVEDEK 440


>gi|149033136|gb|EDL87954.1| rCG37594 [Rattus norvegicus]
          Length = 623

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 214/427 (50%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 130 TSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 189

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 190 VIELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 247

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +IVV TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 248 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 307

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         ++++ + +D      V+     R  
Sbjct: 308 PARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFL 367

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 368 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 427

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 428 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 486

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         V  I+ +  +++++   FL     +  K       
Sbjct: 487 ELGFL-RYLKQSKVPLNQFDFSWSKVSDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 544

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 545 SHSLKQI 551


>gi|55741498|ref|NP_001006997.1| ATP-dependent RNA helicase DDX18 [Rattus norvegicus]
 gi|54035578|gb|AAH83919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Rattus norvegicus]
          Length = 674

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 214/427 (50%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 181 TSFASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 240

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 241 VIELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 298

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +IVV TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 299 VQKLLNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 358

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         ++++ + +D      V+     R  
Sbjct: 359 PARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFL 418

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 419 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 478

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 479 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 537

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         V  I+ +  +++++   FL     +  K       
Sbjct: 538 ELGFL-RYLKQSKVPLNQFDFSWSKVSDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 595

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 596 SHSLKQI 602


>gi|113969711|ref|YP_733504.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113884395|gb|ABI38447.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 427

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 188/382 (49%), Gaps = 4/382 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  Y   T +Q A +   L  +DVL  A TGSGKT AF + L   L       
Sbjct: 19  PLCNRLTELTYAAPTPIQAATIPAVLSGRDVLAGANTGSGKTAAFAVPLLQRLFEAKTAE 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNGAHI 127
             A     L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KSAGQVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    L ++ + A+VLDEAD ML LGF D++  +L++ P K++ L++SA
Sbjct: 139 LVATPGRLLDLLASNALKLNRVLALVLDEADRMLSLGFTDELNQVLEALPAKKQTLLYSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +  ++ SE       + R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRALTAKLLHQPLEYHLQSEQESTI--EQRVITVNREQKTALLAHLIKQHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   + G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKSGDISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVIEKKNKIKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQD 389
             E  P  EA  E   + + Q+
Sbjct: 377 EREQVPGFEANAEMPLEVLAQE 398


>gi|113969089|ref|YP_732882.1| ATP-dependent RNA helicase DbpA [Shewanella sp. MR-4]
 gi|113883773|gb|ABI37825.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 458

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/370 (34%), Positives = 199/370 (53%), Gaps = 7/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L+  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 68  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+F
Sbjct: 122 HIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    D V V +A  + + +   +   L     R  A+  +L     +
Sbjct: 182 SATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L++  F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L      
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLER 361

Query: 366 SVVWEPAPSV 375
            +  E  PS+
Sbjct: 362 DIQSEALPSL 371



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 24/72 (33%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G+  N        +  G K+K     ++  L   +GI    +G I V     +V V+   
Sbjct: 375 GTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKV 434

Query: 518 VDLLRRTVKLDK 529
                  +   +
Sbjct: 435 AKKALSKITSGR 446


>gi|307105200|gb|EFN53450.1| hypothetical protein CHLNCDRAFT_36420 [Chlorella variabilis]
          Length = 421

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 9/374 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-RFSPASAPLAL 78
           + + + +Q   L   L  +D++  A TGSGKT+AFGL     + A+++   +    P+AL
Sbjct: 23  FQHPSPIQAQCLPLALSGRDLVGIAATGSGKTLAFGLPALRHIRAQSEAGVATGKKPVAL 82

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            IAPTRELA+Q+   LE   ++ G+      GGV    +   L+ GA IVV TPGRL D 
Sbjct: 83  VIAPTRELALQICAVLEEAGSQCGISTVCVYGGVPKREQVAALRKGAAIVVATPGRLEDL 142

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +      +  +  +VLDEAD MLDLGF   I  I   +   R+ LMFSAT  PAI  LA 
Sbjct: 143 LEDGACRLDEVSYLVLDEADRMLDLGFEPHIRAIAGKTRADRQTLMFSATWPPAIRKLAS 202

Query: 199 NYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            +    VRV I S++       + +       A   R + ++       +   I+F   +
Sbjct: 203 EFLCHPVRVTIGSQDLAASHSVTQVIEVIEDRARDGRLHELLQRYHASRSNRVIIFVLYK 262

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
               R  ++L    ++  A+ G++SQ +RS+A++  + G   + +ATDVAARG+D+PD+E
Sbjct: 263 KEAVRVEQLLQRKGWKAAAIHGDISQVQRSSAVEQFKSGAVPLLVATDVAARGLDIPDVE 322

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERL---FREANVSVVWE 370
            V++       E+ +HR GRTGRAG+ G +  F +  N + RA  L    REA  +V  E
Sbjct: 323 AVLNYSFPLTTEDYVHRIGRTGRAGKTGKAHTFFVGNNDKPRAGELINVLREAKQTVPEE 382

Query: 371 PAPSVEAIRERDAQ 384
                  +++++++
Sbjct: 383 LLKFGTTVKKKESK 396


>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 434

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 195/367 (53%), Gaps = 10/367 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+  NI + I ++L+  G+   T VQ+  + P L  +DV+V ++TGSGKT AF + + +
Sbjct: 1   MFDSMNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIIN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L         +  P A+ I PTRELA+QV    + +    G+      GG S++ +   
Sbjct: 61  NL-------KKSHYPSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEA 113

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G +I+VGTPGR+ D I+   L    +K +VLDE D MLD+GF DD+++IL   P+++
Sbjct: 114 IRAGVNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEK 173

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + + FSATI   I  +   Y K+ + +NI S+      I++   +  ++D+   ++  + 
Sbjct: 174 QTMFFSATIPSEIRAVTNKYTKNPIIINIDSKEVTVDTIEHYYSIARVADKFLTLLAYID 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K +IVFC T+ +  R   +L +     V + G LS Q R      +      + IA
Sbjct: 234 TKKPKKSIVFCRTQINAERIHTILRKVGIPAVLMHGGLS-QSRREHSLSLFKSGTEMLIA 292

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VA+RG+D+ ++  +I+ +   +P+  +HR GRT R G+ G +  ++    +     + 
Sbjct: 293 TNVASRGLDIDNVSDIINFDAEEDPKAYVHRVGRTARMGKSGRAFTILTPRERYLVYDIE 352

Query: 361 REANVSV 367
             A + +
Sbjct: 353 SYAKIKM 359


>gi|196016401|ref|XP_002118053.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
 gi|190579356|gb|EDV19453.1| hypothetical protein TRIADDRAFT_33552 [Trichoplax adhaerens]
          Length = 524

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/380 (30%), Positives = 189/380 (49%), Gaps = 16/380 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ ++I   +    Y   T VQ+  ++    ++D++  AQTGSGKT AF + + S +   
Sbjct: 112 DLGEIILGNIELCQYNIPTPVQKYAISIITGKRDLMACAQTGSGKTAAFLIPILSLIFNG 171

Query: 66  NDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                P S         PLAL +APTRELA Q+  E +    +      V  GG     +
Sbjct: 172 GPVVKPQSYYGSRRKQFPLALILAPTRELAAQIYEEAKKFTYRAVARPCVVYGGADFGYQ 231

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +DL  G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I++   
Sbjct: 232 VKDLDRGCHLLVATPGRLVDMLERGMIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDT 291

Query: 178 K----KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                +R+ +MFSAT    I  LA+++  D + + +        +I  + V V   D+  
Sbjct: 292 MPPSGQRQTMMFSATFPKEIQVLARDFLDDYIFLAVGRVGSTSENIIQKMVWVEEDDKRA 351

Query: 234 AIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            ++ +L      + ++VF  T+       + L    +   A+ G+ SQ++R +AL+  R 
Sbjct: 352 YLLELLNSTEPTSLSLVFVETKKGADSLQEFLVRMGYYSTAIHGDRSQRDREDALRAFRA 411

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
           G   + +AT VAARG+D+P++  VI+ +L S+ E  +HR GRTGR G  G +     +  
Sbjct: 412 GVRPILVATAVAARGLDIPNVAHVINFDLPSDIEEYVHRIGRTGRVGNVGTATSFFNEKN 471

Query: 351 -NMQRRAERLFREANVSVVW 369
            N+ +    L  EA  SV  
Sbjct: 472 KNVAKDLVDLLLEAKQSVPR 491


>gi|146163668|ref|XP_001012102.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146145909|gb|EAR91857.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 533

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 214/418 (51%), Gaps = 14/418 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + + EA +   YV  T++Q   L   L+++D++  A+TGSGKT+AF L +  
Sbjct: 97  TFQSLGVCEELVEACNRLKYVKPTAIQRESLVYTLKQRDIIALAETGSGKTLAFALPVIQ 156

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL     F       AL ++PTREL +Q+    E L     +   V +GG+    +   
Sbjct: 157 NLLDAPQPF------YALVLSPTRELCMQIAEHFEALGVGISLKTTVIVGGLDPMAQAIA 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI++GTPGR+  H++     N   LK +VLDEAD++L++ F  DI  ILD  PKK
Sbjct: 211 LSKKPHIIIGTPGRILYHMQNTKGFNFKALKFLVLDEADKLLNMDFEKDINQILDIIPKK 270

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +   KD V++ ++S+ +  S +  +   +    +D  +V  L
Sbjct: 271 RNTFLFSATMTNKVHKLQRASLKDPVKIEVSSKYQMVSTLVAQYAFIPAKYKDCYLVYSL 330

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+F  T  +  + T +L    F  V + G++SQ +R  A+   + G  ++ +
Sbjct: 331 NEFAGNTSIIFVQTCLNAIKLTLMLRNLGFSAVTIHGQMSQVKRLGAINKFKSGEKKILV 390

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P ++LVI+ ++ +N +  +HR GRT RAGR G ++  + Q       ++
Sbjct: 391 ATDVASRGLDIPSVDLVINYDIPTNAKEYVHRVGRTARAGRAGKAISFVTQYDVEMYLKI 450

Query: 360 FREANVSVVWEPAPSVEAI----RERDAQRI-LQDPLFLDSIQGDEKKMVDVLLAKHD 412
                  +        + +    R ++AQRI  Q+   +   + +    VD    K+ 
Sbjct: 451 EALIGKKLDQYKCEEYQVLVFNERVQEAQRIAAQEIKEIMEKKNNPLHDVDDEGEKYS 508


>gi|124810293|ref|XP_001348829.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|23497730|gb|AAN37268.1| helicase 45 [Plasmodium falciparum 3D7]
 gi|83272531|gb|ABC00776.1| eIF4A-like [Plasmodium falciparum]
 gi|112434012|gb|ABI18354.1| eIF4A-like [Plasmodium falciparum]
          Length = 398

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 188/376 (50%), Gaps = 9/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F ++ 
Sbjct: 22  VDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISS 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +        A  AL +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 82  LQLINYD------YVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  + L +  LK  +LDEADEML  GF+  I  +      
Sbjct: 136 DKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D   + +  +      I    V +     + + + +
Sbjct: 196 DIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +I++C+TR  V   T+ +   LF V  + G++ Q++R   ++  R G  RV
Sbjct: 256 LYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+ ARGID+  + LVI+ +L ++P+  +HR GR+GR GRKG+++  +  + + + +
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDK 375

Query: 358 RLFREANVSVVWEPAP 373
               E+  S   E  P
Sbjct: 376 LKKIESYYSTQIEEMP 391


>gi|324502652|gb|ADY41165.1| ATP-dependent RNA helicase an3 [Ascaris suum]
          Length = 656

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 185/397 (46%), Gaps = 22/397 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++     + E + + GY   T VQ+  +   ++ +DV+  AQTGSGKT AF + L +
Sbjct: 107 SFDDLALHPWVQENIRKSGYSKPTPVQKYSIPTLMQRRDVMSCAQTGSGKTAAFLIPLIN 166

Query: 61  TLLAEND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            +L                  A  P+AL +APTRELA+Q  +E      +T +  A+  G
Sbjct: 167 QILRNGPDAIRPPQLMNNGRRAMFPVALILAPTRELAMQTHKEALKFGYRTNITSAILYG 226

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L+ G HI++ TPGRL D +R   + +     +VLDEAD MLD+GF   I
Sbjct: 227 GRENYRDQINKLRIGCHILIATPGRLLDVVRQGYVLLQECTFLVLDEADRMLDMGFEPQI 286

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRA 223
             I++ +   ++ +  +A  S       +   +D +  N          +   + I    
Sbjct: 287 RQIVEQNGMPQKGMRVTAMFSATFPKEIQVLAQDFLLPNYVFLAVGRVGSTSENIIQKVL 346

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            +     ++  +  +         +VF  T+   +     L  + + VV + G+L Q ER
Sbjct: 347 WVEEHEKKNFLMELLDADANKGLTLVFVETKRGANDLAWFLQRNNYNVVPIHGDLKQFER 406

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              L+M R G A V +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G 
Sbjct: 407 ERHLEMFRTGEANVLVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNVGQ 466

Query: 344 SVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEA 377
           +        +N+ R    L  E+N  +     P  + 
Sbjct: 467 ATSFFNDKNRNLGRDLAELLVESNQEMPEWLDPIAKE 503


>gi|315649347|ref|ZP_07902436.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
 gi|315275335|gb|EFU38704.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
          Length = 448

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 191/361 (52%), Gaps = 6/361 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +   L+E G V  + VQ   + P L  KDVL ++QTG+GKT+A+ L +  ++  E   
Sbjct: 13  EDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQSIDPE--- 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L++   ++
Sbjct: 70  ---IKGAQKLILAPTQELAVQIVRESERYGETRGIGVLGLIGGAAAKRQIEKLKSHPQLI 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGR+ + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  SAT
Sbjct: 127 VGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +SP    L K      V + I  E R  S +++   +    D+ + +  ++R++    AI
Sbjct: 187 VSPETAELVKKEMDQPVEIGIDPEQRTPSALEHYYFVTEERDKLDMLRRVVRHYNPDRAI 246

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF +    ++     L        A+ G+  +  RS  L   R+GR ++ +A+DVAARG+
Sbjct: 247 VFVNATEDLAEVEAKLNYLGLNAAAIYGDADKMTRSRVLNAFREGRTKLLVASDVAARGL 306

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S+ 
Sbjct: 307 DIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGISIE 366

Query: 369 W 369
            
Sbjct: 367 E 367


>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
 gi|158514819|sp|A3LNR6|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
 gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
          Length = 567

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 200/417 (47%), Gaps = 12/417 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + +    A+S+ G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     
Sbjct: 105 FEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEL 164

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + +F P +    + ++PTRELA+Q+      L A       + IGG +  +E   L
Sbjct: 165 LY--SLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIVIGGANRRQEAEKL 222

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL DH++        +LKA+V+DEAD +L++GF ++++ I+   PK+ 
Sbjct: 223 AKGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPKEE 282

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V   +       ++   V+     R   + 
Sbjct: 283 RQSMLFSATQTTKVEDLARISLRPGPLYINVVPETAASTADGLEQGYVVCDSDKRFLLLF 342

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+  SV  F ++L      V+ L G+  QQ+R+N      + +  
Sbjct: 343 SFLKKYSKKKIIVFLSSCNSVKYFGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 402

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
             + TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +    
Sbjct: 403 TLVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLTPSELGF 462

Query: 356 AERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R  + ANV +     P+ + +  +    ++++   +L     D  +      A H
Sbjct: 463 L-RYLKAANVPLNEYEFPTNKIVNIQSQLSKLIKSNYWLHQSAKDGYRSYLQAYASH 518


>gi|194433859|ref|ZP_03066133.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|194417962|gb|EDX34057.1| ATP-independent RNA helicase DbpA [Shigella dysenteriae 1012]
 gi|320180214|gb|EFW55149.1| ATP-dependent RNA helicase DbpA [Shigella boydii ATCC 9905]
          Length = 457

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     +++ W+  P   +I   +A+
Sbjct: 354 NIISDMLQITLNWQTPPVNSSIVPLEAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   +   + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQITLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQDGK 445


>gi|71031306|ref|XP_765295.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68352251|gb|EAN33012.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 470

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 202/395 (51%), Gaps = 22/395 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  A  E G+   T +Q   +   L  KD++  A+TGSGKT AF + +  
Sbjct: 42  TFEDLGVCVELCRACKELGWKRPTKIQIEAIPIALSGKDIIGLAETGSGKTAAFTIPILQ 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +  R        +L +APTREL++Q+  +L  L ++ G+ V + +GG+ +  +   
Sbjct: 102 KLLEKPQR------LFSLILAPTRELSLQIKEQLISLGSEIGLDVCLILGGLDMVSQALQ 155

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HI+VG+PGR+ DH++     ++  +K +VLDEAD++L   F D +  I+ S PK 
Sbjct: 156 LSKKPHIIVGSPGRIADHLQNTKGFSLETIKYLVLDEADKLLSTDFDDSLNKIITSLPKD 215

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +   ++SAT++  IT L K      +++N+ ++      +  + +L+ L  +   +  IL
Sbjct: 216 KVTYLYSATMTSKITKLQKVTLMKPIQINVNTKYHTSEHLIQKYLLIPLKFKYTYLACIL 275

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA------------- 286
             +     +VFC+T  +  + T  L    F+ V L G+LSQ +R N+             
Sbjct: 276 WKYSTSTIMVFCNTCLTSQKVTLFLQNLSFKSVCLHGKLSQIQRLNSLNSFKTGKLQPIP 335

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
              +  G   + + TDV +RG+D+P ++LVI+ ++ +  ++ +HR GRT RAG+ G+S+ 
Sbjct: 336 QPHIISGLFNILVVTDVGSRGLDIPFVDLVINFDVPNTSKDYIHRVGRTARAGKSGISLT 395

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           +I Q      +R     N  +      S E +  +
Sbjct: 396 LITQYDIESFQRTEYALNKKLEEYKDISEEEVYNK 430


>gi|321464143|gb|EFX75153.1| hypothetical protein DAPPUDRAFT_226459 [Daphnia pulex]
          Length = 447

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 196/386 (50%), Gaps = 24/386 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EA +   +   T +Q   +   L+ +DV+  A+TGSGKT AF L +  +LL+  
Sbjct: 32  LRSELEEACNLLKWTEPTPIQREAIPLALQGRDVIGLAETGSGKTGAFTLPMLHSLLSNP 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         L + PTRELA Q+  ++E L +  GV  AV +GG+ +  +   L    H
Sbjct: 92  QR------LFGLILTPTRELAFQISEQIEALGSSIGVKCAVIVGGIDMISQSLMLAKKPH 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL DH              + +     L      +++ IL S P++RR L+FS
Sbjct: 146 IVIATPGRLVDH--------------LENTKGFNLKSLKYLEVDKILKSIPRERRTLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT++  +  L +    + VRV I+S+ +    +    V + L  +D  +V++L      +
Sbjct: 192 ATMTSKVQKLQRASLVNPVRVQISSKYQTVDKLLQYYVFIPLKMKDVYLVHLLNEAAGHS 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFCST +S  R + +L       V L G+++Q +R  AL   +     V +ATDVA+R
Sbjct: 252 VMVFCSTCSSTLRTSLLLRALGISAVPLHGQMTQNKRLAALNKFKARNRGVLLATDVASR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P ++ VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+       
Sbjct: 312 GLDIPHVDWVINYDIPTHSKDYIHRVGRTARAGRSGKAISFVTQYDVELYQRIEHLLGKQ 371

Query: 367 VVWEPAPS--VEAIRER--DAQRILQ 388
           +         V +++ER  +AQR+ +
Sbjct: 372 LPLYGLEEGDVMSLQERVAEAQRVAK 397


>gi|56972628|gb|AAH88581.1| ddx52-prov protein [Xenopus (Silurana) tropicalis]
          Length = 585

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 166/412 (40%), Gaps = 23/412 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       I + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 168 TFQQLEQEYKTHSKIIQNVKDFGFHTPTPIQMQAIPIMLHGREILASAPTGSGKTMAFSI 227

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL I+PTRELA Q  REL  L    G  + V        +
Sbjct: 228 PILAHLQCPKNK-----GCRALIISPTRELANQTHRELVKLSDGIGFRIHVINKAAVAAK 282

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 283 KFGPKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLA 342

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   +R +  +            +          A  +   +       + + 
Sbjct: 343 SIFVACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSIGARNSAVETVEQSLLFVGSE 402

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++++       +VF  +          L      V  +  E +QQ+R N +Q
Sbjct: 403 TGKLLAMRDLVKKGFTPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQ 462

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V I T + ARGID   + +VI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 463 SFREGKIWVLICTALLARGIDFKGVNMVINYDFPTSAVEYIHRIGRTGRAGHRGKAVSFF 522

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            ++ +   R    + ++A   +  +   S   ++ +  +R+++ PL  D I+
Sbjct: 523 TEDDKPMLRSVASVIQKAGCPIP-DYIKSFRKLQSKQKKRMIKRPLKRDQIR 573


>gi|283832032|ref|ZP_06351773.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
 gi|291071651|gb|EFE09760.1| ATP-dependent RNA helicase SrmB [Citrobacter youngae ATCC 29220]
          Length = 442

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 190/389 (48%), Gaps = 10/389 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + VA   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +      +  +   ++
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAMLI 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L +       L GE+ Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           V +ATDVAARGID+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 354 RRAERLFRE-ANVSVVWEPAPSVEAIRER 381
            +A R   E     V+ E  P+  A  E+
Sbjct: 361 GKASRYIDEPLKARVIDELRPTTRAPSEK 389


>gi|226366438|ref|YP_002784221.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244928|dbj|BAH55276.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 465

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/459 (29%), Positives = 204/459 (44%), Gaps = 16/459 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+  AL   G      +Q A +   L  +DVL  A TGSGKT+AFGL +   L    
Sbjct: 21  LPAVMTHALDRGGIAAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRL---K 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P  + + PTRELA+Q+ R L+      G+ VA  +GGV + R+   L  G  
Sbjct: 78  GAASRRGYPRGVVLVPTRELALQIERALDEPALSVGLRVANVVGGVPIKRQAETLSRGVD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+    +++  +  + LDEAD M DLGF   +  ILD +P   + L+FS
Sbjct: 138 LLVATPGRLADHLAQGSVSLDDVTVLALDEADHMADLGFLPQVTTILDKTPAGGQRLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL + Y  + V  + A        + +  + V   D+ +  V          
Sbjct: 198 ATLDGDVDTLVRRYLHEPVTHSTAPAAAAVPTMRHHLLYVDRRDKYS--VVAHIGSRPGR 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V R  + L        AL G  +Q  R+  L    DG   V +ATDVAAR
Sbjct: 256 TLMFVRTKHGVDRVAQELHAAGVAAGALHGGKAQNNRTRTLASFADGTTPVLVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+H +  +  ++ LHR+GRT RAG  G+ V ++ ++ +   E+L R+A + 
Sbjct: 316 GIHVDGITLVVHVDPPTEAKDYLHRAGRTARAGESGVVVTLVTEDERAAVEKLTRQAGLD 375

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           +   P         R   R+L +        G      D      D  K      ++H  
Sbjct: 376 ITATPV--------RPGDRVLAEITGARRPTGKAVPAPDTRAPAQDTPK---KGRQVHDP 424

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           G  A     P    + R   R   +            +G
Sbjct: 425 GGRAARRGRPGDGGAARSGARRGRKPGPASTPHGHRNRG 463


>gi|221504486|gb|EEE30159.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 1544

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 206/485 (42%), Gaps = 21/485 (4%)

Query: 2    KIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              F+  +P  I + L+ RG      +Q   +   +  +DV+  A+TGSGKT+A+GL L  
Sbjct: 974  TFFQCGLPDKIVKYLTLRGITEPFPIQMQAIPCLMCGRDVIAVAETGSGKTLAYGLPLIR 1033

Query: 61   TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             +L+   +       +AL IAPTREL  Q+ +E+        +    C GG  +  +   
Sbjct: 1034 HVLSVKQQ-DFRDGAIALVIAPTRELCNQIFKEINRCCKLVDLNAVACYGGAGIGSQLGA 1092

Query: 121  LQNGAHIVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++ G  ++VGTP     +     G+  ++  +  +VLDEAD M D GF   +  I+ SS 
Sbjct: 1093 IKRGVEVIVGTPGRLIDILTMNGGRLTSLKRVTFIVLDEADRMFDFGFEPQVTSIIASSR 1152

Query: 178  KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              R+  +FSAT  P I  LA+   +  V + +  + R  +++     ++    +   ++ 
Sbjct: 1153 PDRQTCLFSATFPPHIEALARRILQKPVEIIVGEKGRTAANVQQYVEVMEEERKFFRLLQ 1212

Query: 238  ILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       + I+F + +         L ++ +Q   L G   Q +R   +Q  +DG   
Sbjct: 1213 LLGEWQEHGSVIIFVNRQVEADELFTELLKYGYQAATLHGGQDQTDREFTIQEFQDGVRT 1272

Query: 297  VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
            + IAT VAARG+D     LVI+    ++ E+ +HR GRTGRAGR G++   + +    +A
Sbjct: 1273 LLIATSVAARGLDCKHCVLVINMTCPNHIEDYVHRIGRTGRAGRIGVAYTFLTKEDADKA 1332

Query: 357  ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + L +    S    P    +A+ +  AQ   +  L +   +                   
Sbjct: 1333 DDLEKALTQSGQAVP----QALSDLSAQYKQECNLGMHEKKKKGGGGFGGRGFSFS---- 1384

Query: 417  AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
            A+   R  R    A +E+         +    D  A +   G   + +         G  
Sbjct: 1385 ASEKSRQQRERQQAKKELGLEKDAEDEEFLDADLLAPEDVLGPSGDREPE-------GRG 1437

Query: 477  QKAEA 481
               + 
Sbjct: 1438 AAVDP 1442


>gi|256811339|ref|YP_003128708.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
 gi|256794539|gb|ACV25208.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus fervens
           AG86]
          Length = 362

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 202/365 (55%), Gaps = 15/365 (4%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLAL 58
           M   E N+ + +  A+  +G+   T +Q  ++   L E  +++  A+TGSGKT +F + L
Sbjct: 1   MSFSELNLSENVLNAIKNKGFEKPTDIQMKVVPLFLNESCNIVAQARTGSGKTASFAIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +       S   A+ + PTRELA+QV  E++ L     + +    GG ++H + 
Sbjct: 61  IELIDED-------SGIEAIILTPTRELAIQVADEIDSLKGNKNLKITKVYGGKAIHPQI 113

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L   A+IVVGTPGR+ DHI    LN+ ++K  +LDEADEML++GF +D+E IL++  K
Sbjct: 114 KAL-KKANIVVGTPGRVLDHINRGTLNLKNVKYFILDEADEMLNMGFIEDVEKILNACNK 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            +R+L+FSAT+   I  LAK Y  D   V       + +    ++ +    +     +  
Sbjct: 173 NKRILLFSATMPKEILNLAKKYMGDYEFV-----KAKINANIEQSYIEINENERFETLCR 227

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        +VFC T+        +L +  F+  A+ G+L+Q +R   +++ +  + ++ 
Sbjct: 228 ILKDREFYGLVFCKTKKDTKDLANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKKIKIL 287

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDV +RGID+ DL  VI+  L  NPE+ +HR GRTGRAG+KGM++ +I +   R+ + 
Sbjct: 288 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGMAISIINRREYRKLKH 347

Query: 359 LFREA 363
           + R+ 
Sbjct: 348 IERKM 352


>gi|330447635|ref|ZP_08311283.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491826|dbj|GAA05780.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 461

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 126/369 (34%), Positives = 198/369 (53%), Gaps = 7/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +
Sbjct: 10  NLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLRVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG+    +   L++G
Sbjct: 70  RFRV------QTLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +HIR   L +  L  +VLDEAD ML++GF+D ++ I++ +P+ R+ L+
Sbjct: 124 AHIIVGTPGRVEEHIRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIEGAPRDRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++AK   ++ V+V + S +   S   +   +    +R  A+  +L  H  
Sbjct: 184 FSATYPDQIASIAKRIMRNPVQVKVESNHDNSSISQHFYKVDNNEERMRAVRLLLSQHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+      +  L  + F  +AL G+L Q+ER   L +  +    + +ATDVA
Sbjct: 244 ESCVVFCNTKREAQEISDDLEAYGFSAIALHGDLEQRERDRTLVLFANKSRSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+  L+ + E  +HR GRTGRAG KG++  +       +   L    +
Sbjct: 304 ARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLD 363

Query: 365 VSVVWEPAP 373
             +  E  P
Sbjct: 364 RPIEGEMLP 372



 Score = 60.4 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 21/129 (16%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E      L  +       E + P  L+        D   F+                +
Sbjct: 349 DKEHYKVALLEDYLDRPIEGEMLPPDHLL--------DQPTFRPA---------MITLMI 391

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKL 527
             G KQK     ++  L   +GI    +G I V     +V    EV+   +  L      
Sbjct: 392 DGGKKQKVRPGDILGALTGENGIAGSDVGKINVFDFCAYVAVKREVARAALKKLENGRIK 451

Query: 528 DKGIQLKYL 536
            +  + + L
Sbjct: 452 GRNFRARQL 460


>gi|295097891|emb|CBK86981.1| Superfamily II DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 442

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + +  AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +
Sbjct: 3   VTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L A T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEHARELAANTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIELIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + + ++FSAT           +  +         S   +     +      L  +   + 
Sbjct: 181 RNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKVELLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A   IVF   R  V    ++L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQEEATRTIVFVRKRERVHELAEMLRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG+++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLL 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           +++ R     +       +       ++++   P
Sbjct: 361 QKIGRYVEEPLKARVIDGLRPTTRAPSEKMTGKP 394


>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
 gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
          Length = 412

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 181/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ + ++  GY   T +Q   +   L+ +D++ +AQTG+GKT +F L +   L    
Sbjct: 22  LSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVLEKL--RQ 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  ++E     TG+      GGV    +++ L +G  
Sbjct: 80  GQTQRKKRVRALILVPTRELAMQVAEKVEQYGQDTGLKSLAVFGGVDEQAQKQRLIDGVD 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D    + +    ++ VVLDEAD MLD+GF + I  I+D  P + + L+FS
Sbjct: 140 VLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQFLLFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+     S+I    + V    +   + +++       
Sbjct: 200 ATLSRKVRELAKTAVNDPYEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQQWDQ 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +   Q  A     SQ  R+  L+  + G+ +  +AT VAAR
Sbjct: 260 ALIFIETKHGAAKLVTQLEKRGIQAEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  V++ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 320 GIDIDQLSRVVNYDLPFPADEYVHRIGRTGRADAVGEAISFVSKDNFKNLCMIESRLGHL 379

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 380 IERRVVEGFE 389


>gi|195147728|ref|XP_002014827.1| GL19380 [Drosophila persimilis]
 gi|194106780|gb|EDW28823.1| GL19380 [Drosophila persimilis]
          Length = 437

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 190/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 14  SGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 73

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 74  LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRL 133

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 134 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 193

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  +  
Sbjct: 194 KPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMGKPT 253

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 254 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 313

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 314 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 373

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 374 RAGKTGCAISFVTKDDSGLFYDL 396


>gi|270001921|gb|EEZ98368.1| hypothetical protein TcasGA2_TC000825 [Tribolium castaneum]
          Length = 629

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/504 (23%), Positives = 223/504 (44%), Gaps = 29/504 (5%)

Query: 3   IFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            F+++   +     +A+++ G+  LT +Q   + P L  +D++ +A+TGSGKT+AF +  
Sbjct: 129 TFDSLKNKVCENTLKAIADMGFTTLTEIQARSIPPLLEGRDLVGAAKTGSGKTLAFLIPA 188

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +F P +    + I+PTREL++Q    L+ L         + +GG S   E 
Sbjct: 189 VELIY--KLKFMPRNGTGVIIISPTRELSMQTFGVLKELMKYHHHTYGLVMGGTSRQTEA 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L  G +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I++  P
Sbjct: 247 QKLSKGINILVATPGRLLDHMQNTPDFLFKNLQCLVIDEADRILDIGFEEEMKQIINLLP 306

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA 234
           K+R+ ++FSAT +     L     K         + +  + +       V+     R   
Sbjct: 307 KRRQTMLFSATQTKKTEALTSLALKKEPIYVGVDDAKSEATVTGLEQGYVVCPSEKRLLV 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++       V+ + G+  Q +R+       +  
Sbjct: 367 LFTFLKKNRKKKVMVFFSSCMSVKFHHELFNYIDLPVMCIHGKQKQAKRTTTFFQFCNAE 426

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQ 353
           + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++     
Sbjct: 427 SGILLCTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEEL 486

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  ++A V +        + A  +   + ++    FL+      K+     +  +D
Sbjct: 487 GFL-RYLKQAKVPLNEFEFSWNKIADIQLQLENLIGKNYFLN---MSAKEAFKAYVRAYD 542

Query: 413 PEKIAAGF----LRIHRAGLCAPEEITPVSL----VSGRDRFRDDSRAFKVGGGSRDNFK 464
              +   F    L + + GL    ++ P       V   +R          G     N  
Sbjct: 543 SHHLKTIFDISTLDLAKVGLSFGFKVPPAVDLKVTVKKSERPSKRKGGGGFGYYKNLNAM 602

Query: 465 GSSWFSLSV-----GSKQKAEARW 483
            S  +  +V       K  ++ R 
Sbjct: 603 PSKDYKKNVVYRQPKRKGGSDKRQ 626


>gi|327329925|gb|EGE71679.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL097PA1]
          Length = 564

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|53716164|ref|YP_106468.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|67639524|ref|ZP_00438373.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
 gi|254203477|ref|ZP_04909838.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|254205355|ref|ZP_04911708.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|52422134|gb|AAU45704.1| ATP-dependent RNA helicase DbpA [Burkholderia mallei ATCC 23344]
 gi|147745716|gb|EDK52795.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei FMH]
 gi|147754941|gb|EDK62005.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei JHU]
 gi|238520075|gb|EEP83538.1| DEAD/DEAH box helicase domain/helicase conserved C-terminal
           domain/DbpA RNA binding domain protein [Burkholderia
           mallei GB8 horse 4]
          Length = 465

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVKWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|237732562|ref|ZP_04563043.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
 gi|226908101|gb|EEH94019.1| ATP-dependent RNA helicase SrmB [Citrobacter sp. 30_2]
          Length = 442

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 190/389 (48%), Gaps = 10/389 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQEKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + VA   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVAEHARELAKNTHLDVATITGGVAYMNHM 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCHAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +      +  +   ++
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSADPSTRERKKIHQFYYRADDIEHKTAMLI 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L +       L GE+ Q +R+ A++ + DGR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELAGWLRQAGINNCYLEGEMVQNKRNEAIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           V +ATDVAARGID+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDAYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 354 RRAERLFRE-ANVSVVWEPAPSVEAIRER 381
            +A R   E     V+ E  P+  A  E+
Sbjct: 361 GKASRYIDEPLKARVIDELRPTTRAPSEK 389


>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
           pisum]
          Length = 615

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 182/382 (47%), Gaps = 15/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   + + I   LS++G    T +Q   +   L  +D++  A TGSGKT+ F L L
Sbjct: 173 LKSFKEMKLNKGIMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPL 232

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRE------LAVQVGRELEWLYAKTGVVVAVCIG 110
               L +  +  F P   P  L I P+RE        +              +   + IG
Sbjct: 233 LMFCLEQEIKLPFKPNEGPYGLIICPSRELAKQTFDIINHYMTFLERSNYPRLRSCLAIG 292

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ V      ++ G HI+V TPGRL D +  K +N+   + + +DEAD M+D+GF +D+ 
Sbjct: 293 GIPVFESLDVIKRGVHIMVATPGRLMDMLDKKMINLEVCRYLCMDEADRMIDMGFEEDVR 352

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     + +N+        ++      V    
Sbjct: 353 TIFSFFQGQRQTLLFSATMPKKIQNFARSALVKPITINVGRAGAASMNVIQEVEYVKQEA 412

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   +  V    + L     + VA+ G   Q+ERS ++   
Sbjct: 413 KVVYLLECLKKTTPP-VLIFAEKKQDVDAIHEYLLLKGVEAVAIHGGKDQEERSKSVDAF 471

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R G+  V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G+ G++   I  
Sbjct: 472 RKGQKDVLVATDVASKGLDFEEIQHVINYDMPDDVENYVHRIGRTGRSGKTGIATTFINK 531

Query: 349 --PQNMQRRAERLFREANVSVV 368
              +++    + L  EA  +V 
Sbjct: 532 ANDESVLLDLKHLLIEARQNVP 553


>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 537

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 193/383 (50%), Gaps = 21/383 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   +  AL+  GY N T VQ+  +   +  +D++VS+ TGSGKT AF L          
Sbjct: 57  LSADVVSALTAAGYQNPTPVQQRAVPAAIAGRDLMVSSPTGSGKTAAFMLPAIERFSQLQ 116

Query: 65  -----------------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVA 106
                               R  P + P  L + PTRELA+QV                 
Sbjct: 117 KAQASQPREPRPADGARNTRRPQPVARPTMLVLTPTRELAMQVTTAAATYGKHLKRLRTV 176

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
             +GGV+  ++   L     I+V TPGRL DH+    +++S L+ +VLDEAD MLD+GF 
Sbjct: 177 SILGGVAYGQQLMLLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFI 236

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL- 225
           +DIE I+ ++P  R+ ++FSAT+   I +L     KD  R+ I     Q ++I       
Sbjct: 237 EDIETIVAATPATRQTMLFSATLDGKIGSLTGRLLKDPERIEIVQRLEQRTNIAQTVHYV 296

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                +D  + ++LR  G   AIVF +T+    +    LA+  F+  AL G+L Q  R+ 
Sbjct: 297 DDRDHKDRLLDHLLRDEGLDQAIVFTATKMDADQLAGRLADAGFESAALHGDLPQGARNR 356

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR G++V
Sbjct: 357 TIKALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGRSGIAV 416

Query: 346 FVIPQNMQRRAERLFREANVSVV 368
            ++    Q   +R+ R     + 
Sbjct: 417 SLVHHAEQGALKRIERFVRTPLP 439


>gi|289342912|ref|NP_001166066.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
 gi|284794217|gb|ADB93367.1| DEAD box polypeptide 3 Y-linked short isoform [Bos taurus]
 gi|296470425|gb|DAA12540.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Bos taurus]
          Length = 660

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V+  
Sbjct: 239 LSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVP 568


>gi|284794215|gb|ADB93366.1| DEAD box polypeptide 3 Y-linked long isoform [Bos taurus]
          Length = 661

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V+  
Sbjct: 239 LSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVLPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L  + E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 539 GLATSFFNERNINISKDLLDLLVEAKQEVP 568


>gi|256379849|ref|YP_003103509.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255924152|gb|ACU39663.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 501

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 127/380 (33%), Positives = 191/380 (50%), Gaps = 11/380 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+  G      +Q A L   L  +D+L   QTGSGKT+AFGLAL S L    
Sbjct: 61  LADELVRALATAGITEPFPIQAATLPDSLAGRDLLGRGQTGSGKTLAFGLALLSRLAGGR 120

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL + PTRELA+QV   L       G+     +GG S  R+   L+ G  
Sbjct: 121 AKP---HMPRALVLVPTRELAMQVEEALSPFARALGLWCRTVVGGTSFPRQIDALRRGVD 177

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+R    ++S +    LDEAD+M D+GF   +  ILD +P+  + L+FS
Sbjct: 178 LLIATPGRLSDHVRQGTADLSEVMFTALDEADQMADMGFMPQVRAILDLTPENGQRLLFS 237

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y  D V  ++A      + +++  + V+  D+ +  V          
Sbjct: 238 ATLDGDVDKLVRQYLHDPVVHSVAPPTGSVTTMEHHLLFVSAEDKQS--VVTEVAAREGR 295

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V R  K L        AL G  +Q  R+  L   R+G   V IATDVAAR
Sbjct: 296 TIMFVRTKHHVDRLAKKLRSMGVHAGALHGGKAQSARTRVLGQFREGTTPVLIATDVAAR 355

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +  ++P++ LHR+GRT RAG+ G  V ++  + +R  + L   A + 
Sbjct: 356 GIHVDDVSLVVHVDPPADPKDYLHRAGRTARAGQSGTVVTLVTHDQRRAVQGLTSRAGIR 415

Query: 367 VVWEPAPSVEAIRERDAQRI 386
                 P    +R  D + I
Sbjct: 416 ------PESTKVRPGDDELI 429


>gi|195390289|ref|XP_002053801.1| GJ23143 [Drosophila virilis]
 gi|194151887|gb|EDW67321.1| GJ23143 [Drosophila virilis]
          Length = 670

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 118/487 (24%), Positives = 218/487 (44%), Gaps = 23/487 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A++E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 185 VSEATLQAIAEMGFSEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 242

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 243 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 302

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 303 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 362

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   E      ++   ++     R   +   L+ +
Sbjct: 363 SATQTERIDALSKLALKKEPIYVGVHDNQETATVEGLEQGYIVCPSEKRLLVLFTFLKKN 422

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R++      +  + + + TD
Sbjct: 423 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTSTFFQFCNAESGILLCTD 482

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 483 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEELGFL-RYLK 541

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            A V +         +  I +   ++++    FL+      K+     +  +D  ++   
Sbjct: 542 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQ---SAKEAFKSYVRAYDSHQLKQI 597

Query: 420 F----LRIHRAGLCAPEEITPVS--LVSGRDRFRDDSRAFKVGGGSRDNFKGS---SWFS 470
           F    L +          + PV    V    R R + R    G G       S       
Sbjct: 598 FNVNTLDLQAVSKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGFGYYKQMNDSGAKQRHF 657

Query: 471 LSVGSKQ 477
             V   Q
Sbjct: 658 KQVNRDQ 664


>gi|281415806|ref|ZP_06247548.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
          Length = 597

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 209/430 (48%), Gaps = 22/430 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +      I EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  QTFADFGVHPAIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAENDR-------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              +   +           A AP AL +APTRELAVQV  +L    A+  + +A   GG 
Sbjct: 97  QRAIGPGEPGWDGLEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +   +  +LQ G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +
Sbjct: 157 AYEPQIEELQRGVEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALS 229
           L + P  R+ ++FSAT+   +  +A+ Y      +  A          DI          
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+D  +   L+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+ 
Sbjct: 277 DKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRA 336

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+  + +ATDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++ 
Sbjct: 337 FRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVD 396

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEA---------IRERDAQRILQDPLFLDSIQGDE 400
                R   + +   +    EP  +  +         I +    R+ Q    L+ ++G+ 
Sbjct: 397 WEDMPRWSLIDKALGLG-QPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLEGET 455

Query: 401 KKMVDVLLAK 410
            + +    AK
Sbjct: 456 LEDLGGPEAK 465


>gi|195431333|ref|XP_002063697.1| GK15774 [Drosophila willistoni]
 gi|194159782|gb|EDW74683.1| GK15774 [Drosophila willistoni]
          Length = 792

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/450 (25%), Positives = 214/450 (47%), Gaps = 15/450 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 165 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYR 224

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 225 P--LNNKTITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 282

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 283 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 342

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 343 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 402

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 403 TFHDHCMVFVQTKKQAHRLHILLGLLNVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 462

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 463 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 522

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A  SV     P  E I +   +    +P   + +  ++ +       +           
Sbjct: 523 NAESSVKNRIIP-PEIIEKYRNKLTALEPEIQNILDEEQAERQIAKTEQQ--------LS 573

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
           +  R  L    +       + + R ++ +R
Sbjct: 574 KTERKLLGQQGQDRRTWFQTKQQREQEKAR 603


>gi|73973757|ref|XP_853740.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 43
           [Canis familiaris]
          Length = 646

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 177/387 (45%), Gaps = 7/387 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E     G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 245 FQYYPE-VMENFKRAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 303

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL+ 
Sbjct: 304 SQPVIREKRNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCIYGGGDRNGQIQDLKK 362

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 363 GVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 422

Query: 184 MFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M SAT   A+     +       V V         +      V      R +    +   
Sbjct: 423 MTSATWPYAVRRLAQSYLKAPMIVYVGTLDLVAVSTVKQNIIVTTEEEKRSHIQRFLESI 482

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 483 SSQDKVIVFVSRKAIADHLSSDLILQHVSVESLHGNREQCDRERALENFKTGKVRILIAT 542

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ +I +N  R A     
Sbjct: 543 DLASRGLDVNDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLITRNDWRVAGELIN 602

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +   A+ SV  E     E       ++
Sbjct: 603 ILERAHQSVPEELVAMAERYEAHRLRK 629


>gi|13514809|ref|NP_004651.2| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|169881239|ref|NP_001116137.1| ATP-dependent RNA helicase DDX3Y [Homo sapiens]
 gi|73620957|sp|O15523|DDX3Y_HUMAN RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|23273291|gb|AAH34942.1| DDX3Y protein [Homo sapiens]
 gi|119612016|gb|EAW91610.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
 gi|119612017|gb|EAW91611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Homo sapiens]
          Length = 660

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 236

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 356

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + +++IL   G+ +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 417 VVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVP 566


>gi|168235783|ref|ZP_02660841.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168819458|ref|ZP_02831458.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194736572|ref|YP_002114683.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712074|gb|ACF91295.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291228|gb|EDY30581.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205343740|gb|EDZ30504.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085851|emb|CBY95627.1| ATP-dependent RNA helicase DBP2 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 457

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PETRQTLLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.8 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|56412534|ref|YP_149609.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361469|ref|YP_002141105.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126791|gb|AAV76297.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092945|emb|CAR58375.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 444

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 189/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P+  A  E+   +  +  L
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVL 399


>gi|332995376|gb|AEF05431.1| ATP-dependent RNA helicase DbpA [Alteromonas sp. SN2]
          Length = 460

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/401 (31%), Positives = 190/401 (47%), Gaps = 11/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I   I +AL  +G   L+ +Q   L   L   DV+  AQTGSGKT+ F +     +   
Sbjct: 10  EINPAITKALDAQGIFTLSPIQAQSLPHALAGSDVIGQAQTGSGKTLCFVIPALEKIDPT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
                   A   L + PTRELA QV  +      + G   V    GG  +  + + L++G
Sbjct: 70  ------LFATQVLVLCPTRELADQVAVQYRNAAKQIGNIKVMTICGGQPMGPQIQSLKHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH+VVGTPGR+ +H+  + L +  ++  VLDEAD MLD+GF DD++ I     K  + L+
Sbjct: 124 AHVVVGTPGRVMEHVEKRRLMLKDVRLRVLDEADRMLDMGFEDDLKVIFSPMKKGVQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT +  I  +A  Y  + V   + S+      I      V    R   +  IL     
Sbjct: 184 FSATYTEEIERIADQYLTEPVICKVESDESNKPSITQIGYNVLPHTRIQTLKAILTDSQP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K AIVFC+ R  V+     L E  F    L GE+ Q ER+  L        +V +ATDVA
Sbjct: 244 KTAIVFCNRRVQVTEVVASLLEDGFSAAGLQGEMEQYERTAVLNQFASDALQVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ D+  VI+  +S  PE  +HR GRT RAG +G ++ ++    +    ++     
Sbjct: 304 ARGLDIDDIPCVINYTVSEEPETHIHRIGRTARAGAEGTAITLVGDEEEHFLRKIEVLQG 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +   P    + +R     RI++      S+   +K+ + 
Sbjct: 364 TDI---PLKGAQGLR-FHKNRIIEPEFSCISLSAGKKQKLR 400



 Score = 57.7 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----ADGVDLLRRTV 525
           SLS G KQK     L+  L + +GI    +G I VQ   +F+ V        ++  R   
Sbjct: 390 SLSAGKKQKLRPGDLVGALTKDAGIPGDDVGKIAVQNSQSFIAVKLRSVKRAMNHFREGK 449

Query: 526 KLDKGIQLKYL 536
              K ++ + L
Sbjct: 450 IKGKRVRARKL 460


>gi|329297879|ref|ZP_08255215.1| ATP-dependent RNA helicase RhlB [Plautia stali symbiont]
          Length = 431

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL E+ + N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALDEKDFHNCTPIQALALPFALSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L +G 
Sbjct: 76  AAEGRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYEKQLKVLADGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I+VGT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +   +
Sbjct: 136 DILVGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPATQRLSM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +A  V +  E +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +T+         LA    +V  L+G+++Q++R   L  +  G   + +ATDV
Sbjct: 256 PDRAIVFANTKHRCEDIWGHLAADGHRVGLLNGDVAQKKRLRILDDVTKGDVDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLACEEYALNLPAIEEYI 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 GHGIP 380


>gi|312863883|ref|ZP_07724121.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
 gi|311101419|gb|EFQ59624.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           vestibularis F0396]
          Length = 447

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 198/467 (42%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I +AL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  E+           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPESRDV------QVVITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D ++ + L I      V+DEAD  +D+GF D ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLVKSRDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVYKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|294884821|gb|ADF47423.1| eukaryotic initiation factor-4A3 [Dugesia japonica]
          Length = 399

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 180/375 (48%), Gaps = 7/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +        +++Q   +   ++ +DV+  AQ+G+GKT    ++        
Sbjct: 31  NLKEDLLRGIXXXXXEKPSAIQARAIKQIVKGRDVIAQAQSGTGKTSLIAISSLQLTDIN 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       L ++PTRELA Q  + +  L     V    CIGG S+ ++ + L  G 
Sbjct: 91  ------LRETQVLILSPTRELAQQTQKVILALGDYMNVQCHACIGGASMAQDMKKLDYGQ 144

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIV GTPGR+ D ++ + L    +  +VLDEADEMLD GF++ I  I    P   ++++ 
Sbjct: 145 HIVSGTPGRVFDMMQRRNLRTGKISTLVLDEADEMLDKGFKEQIYQIYRYLPPGTQVILI 204

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGA 244
           SAT+   I  +   +  + +R+ +  +      I      +     + + + +I      
Sbjct: 205 SATLPHDILEMTSKFMTNPIRILVKRDELTLEGIKQYFVSVEREEWKFDTLCDIYDTVTV 264

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++FC+T+  V   T+ + E+ F V ++ G++ Q ER    +  R    RV I TDV 
Sbjct: 265 TQVVIFCNTKRKVEWLTEKMRENNFPVSSIHGDMPQGERDEITRQFRALETRVLITTDVW 324

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + +   
Sbjct: 325 ARGIDVQHVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKSDDVRILRDIEQFYA 384

Query: 365 VSVVWEPAPSVEAIR 379
             +   P    E ++
Sbjct: 385 TQIDEMPMNMAELVK 399


>gi|218704863|ref|YP_002412382.1| ATP-dependent RNA helicase DbpA [Escherichia coli UMN026]
 gi|293404872|ref|ZP_06648864.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298380516|ref|ZP_06990115.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300900110|ref|ZP_07118304.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331672872|ref|ZP_08373658.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
 gi|218431960|emb|CAR12845.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           UMN026]
 gi|291427080|gb|EFF00107.1| ATP-dependent RNA helicase DbpA [Escherichia coli FVEC1412]
 gi|298277958|gb|EFI19472.1| ATP-independent RNA helicase DbpA [Escherichia coli FVEC1302]
 gi|300356389|gb|EFJ72259.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|331070093|gb|EGI41462.1| ATP-independent RNA helicase DbpA [Escherichia coli TA280]
          Length = 457

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|213409972|ref|XP_002175756.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003803|gb|EEB09463.1| ATP-dependent RNA helicase Has1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 572

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/477 (24%), Positives = 217/477 (45%), Gaps = 17/477 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F ++P  +    A+ + GY  +T VQ   + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 83  ELFTDLPLSEKTLNAIKDIGYEKMTEVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAI 142

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL   + +F P +    + ++PTRELA+Q+    + L         + IGG +   E  
Sbjct: 143 ETLY--SLKFKPRNGTGVIIVSPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEAD 200

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++        +L+++++DEAD +L++GF D++  I    P 
Sbjct: 201 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLIIDEADRILEIGFEDEMRQIAKVLPS 260

Query: 179 KRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + R  M  +            ++       + V+   +      ++   V+V    R   
Sbjct: 261 ENRQTMLFSATQTTKVEDLARISLRPGPLYINVDAGKDTSTADGLEQGYVVVESDKRFLL 320

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+ +  K  IVF S+ ASV    ++L      V+ L G+  QQ R+N      +  
Sbjct: 321 LFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAE 380

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQ 353
             + + TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +  
Sbjct: 381 KGIMLCTDVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGAKGKGRSLIFLTPSEL 440

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  + A V +     PS + A  +   ++++    +L     D  +      A + 
Sbjct: 441 GFL-RYLKAAKVPLNEYEFPSNKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYS 499

Query: 413 PEKI----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            + I         ++ ++ G   P  +      SGR   ++    ++    S    K
Sbjct: 500 LKSIFDINKLDLTKVAKSFGFATPPSVNITIGASGRADKKERKAGYRKKSSSDVYSK 556


>gi|73965189|ref|XP_861178.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
           isoform 2 [Canis familiaris]
          Length = 432

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/349 (28%), Positives = 170/349 (48%), Gaps = 3/349 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + +   P   
Sbjct: 4   IRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE-LEPGDG 62

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA IVV TPGR
Sbjct: 63  PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGR 122

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L DH++ K  N+  +  +V DEAD M D+GF   +  I       R+ L+FSAT    I 
Sbjct: 123 LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIE 182

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCS 252
            LA++   D +RV        + D+     ++         +      +  + + ++F +
Sbjct: 183 KLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVT 242

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +A+       L +    +  L G++ Q ER+  +   +     V +ATDVAARG+D+P 
Sbjct: 243 KKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPS 302

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ++ VI+ +++ + +   HR GRTGRAG KG++  ++       A  L R
Sbjct: 303 IKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 351


>gi|86141342|ref|ZP_01059888.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85831901|gb|EAQ50356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/365 (28%), Positives = 182/365 (49%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           + + + + L+E G    T +Q  ++   L     ++  AQTG+GKT A+GL +   +   
Sbjct: 10  LNKNLIKGLNELGIQTPTEIQAQVIPLLLEGATHLVGQAQTGTGKTAAYGLPILEQINPN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNG 124
                      AL + PTREL+ QV ++L      T  +      GG  +  + ++L   
Sbjct: 70  QKSI------QALILCPTRELSQQVAKQLFKFTKYTDKIFTEAVYGGEKIDIQIKNLSRP 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D +  K +++S +  VVLDEADEML +GF+  ++ IL          +
Sbjct: 124 TQIVVATPGRLIDLLSRKAIDLSQVNTVVLDEADEMLSMGFKQQLDDILSHLRNVENKWL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  +   +  +       S +  + +I+++ +     D+   +++ L+    
Sbjct: 184 FSATMPHGIKQIVNQHMAEDAHRIQISRDVVNKNIEHKFLQCEEVDKLPILLDFLKTKKG 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+A+ ++  K L        AL G++ Q+ER   ++  ++   RV +ATD+A
Sbjct: 244 ERGIIFCKTKAATAKLAKQLIAKNIAAEALQGDMLQKERDKVMRAFKNESLRVLVATDIA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ DL  V+H ++    E   HRSGRT RAG++G+S+ ++     R      +   
Sbjct: 304 ARGIDVQDLTFVVHYQMPDQEEYYTHRSGRTARAGKEGLSLALVTSKELRILRSYEKALG 363

Query: 365 VSVVW 369
           + +  
Sbjct: 364 IGISE 368


>gi|281347447|gb|EFB23031.1| hypothetical protein PANDA_001323 [Ailuropoda melanoleuca]
          Length = 613

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 130 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 189

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 190 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 249

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 250 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 309

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 310 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 369

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 370 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 429

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT V+ARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 430 DREEALHQFRSGKSPILVATAVSARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 489

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 490 GLATSFFNERNINITKDLLDLLVEAKQEVP 519


>gi|212710200|ref|ZP_03318328.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
 gi|212687199|gb|EEB46727.1| hypothetical protein PROVALCAL_01259 [Providencia alcalifaciens DSM
           30120]
          Length = 428

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 185/372 (49%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + EAL+++G+   T +Q + L   +  KDV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVIEALNKKGFNFCTPIQASTLPYTVEGKDVAGQAQTGTGKTLAFLTSTF 68

Query: 60  STLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL          + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + 
Sbjct: 69  HFLLTHPAIEGKKTNQPRALIMAPTRELAVQIYSDAKELAEYTGLKMGLAYGGDGYDEQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R LQ+G  I++GT GRL D+ +   ++++ ++ +VLDEAD M DLGF  DI ++    P 
Sbjct: 129 RVLQDGVDILIGTTGRLIDYAKQGHVDLAAIQVIVLDEADRMYDLGFIKDIRWLFRRMPS 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               L   FSAT+S  +  LA         + +    +    I       +  ++   + 
Sbjct: 189 ATDRLNLLFSATLSYRVRELAFEQMNSPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     +  I+F +T+         LA    +V  L+G+++Q++R   L+    G+  
Sbjct: 249 TLLEEEWPERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGQID 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYALNL 368

Query: 357 ERLFREANVSVV 368
             +      S+ 
Sbjct: 369 PAIEEYIQHSIP 380


>gi|126444520|ref|YP_001061297.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 668]
 gi|126224011|gb|ABN87516.1| DEAD/DEAH box helicase/dbpA RNA-binding protein [Burkholderia
           pseudomallei 668]
          Length = 465

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 129/372 (34%), Positives = 194/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + +    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARID--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   RV +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|296116226|ref|ZP_06834844.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977332|gb|EFG84092.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 406

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 180/368 (48%), Gaps = 2/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + LS  G    + +Q   + P L  +DV   A TG+GKT+AF   L   LL   
Sbjct: 41  LTAPVRDNLSRMGVRIPSPIQIQAIPPILSGRDVEGIAPTGTGKTIAFAAPLTQRLLGAP 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P  A   + ++PTRELA Q G         TG+ V V IGGV   R+ RDL+ GA 
Sbjct: 101 HERIPHVA-RIICLSPTRELANQTGGAWRGCAKGTGLKVVVTIGGVPRARQVRDLEAGAD 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +    +      A+V+DEAD MLDLGF DD+  I    P   + L+FS
Sbjct: 160 ILVATPGRLVDLLSDGAVVADATTALVVDEADRMLDLGFIDDMMSIASRLPVTHQTLLFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L +      VRV + + +     I  + + +    +  A+V+ L  H ++ 
Sbjct: 220 ATMPAEIVDLGRRLLHRPVRVKVDTADAPPPRIRQQVMFIPPRHKLGALVSFLSTHPSRR 279

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  TR         L   +   V + GE +Q  R   L+  RD +  V IATDV AR
Sbjct: 280 VLIFTETRRQADDLANALGREMTCGV-MHGEHTQARRERTLRDFRDHKLHVLIATDVMAR 338

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV++ ++    E  +HR GRT RAGR+G ++ +     +   + + R     
Sbjct: 339 GIDVEDVMLVVNYDIPRQAEAYVHRIGRTARAGRQGSALSLCAPEERLLLKDIERVTGAR 398

Query: 367 VVWEPAPS 374
           +     P+
Sbjct: 399 LKAIDPPA 406


>gi|293409738|ref|ZP_06653314.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470206|gb|EFF12690.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 457

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNILPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|237650467|ref|ZP_04524719.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974]
 gi|237821903|ref|ZP_04597748.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 447

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTSQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 534

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 117/395 (29%), Positives = 191/395 (48%), Gaps = 13/395 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   N+P  + +      + N + +Q       L  +D +  A+TGSGKT+A+G+  
Sbjct: 115 LKSFSESNLPDNVLKCCQS--FKNPSPIQAHAWPFLLDGRDFIGIAKTGSGKTLAYGIPA 172

Query: 59  ASTLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              +L++    S  S  PL L +APTRELA Q+   L       GV      GG S   +
Sbjct: 173 VMHVLSKRKGASANSVNPLCLVLAPTRELADQISVVLRDAGEPCGVRSVCLYGGTSKGPQ 232

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IV+ TPGRL D I     ++  +  +VLDEAD MLD+GFR ++  IL  + 
Sbjct: 233 ISSLKSGVDIVIATPGRLKDLIEMNICHLMEVSFLVLDEADRMLDMGFRQEVRSILSKTC 292

Query: 178 KKRRMLMFSATIS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             R+M+MFSAT              +     V  + +   + D+     ++    RD  +
Sbjct: 293 SARQMIMFSATWPLDVHNLAEEYMDRNPIKVVVGSEDTAANHDVMQIVEVLDDHLRDKRL 352

Query: 236 V---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +              +VF   +    R   +L    + VV++ G  +Q++R+ AL + + 
Sbjct: 353 LALLEKYHKTQRNRVLVFALYQKEAERLDGMLHRSGWNVVSIHGNKAQEQRTKALSLFKK 412

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + +ATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++      + 
Sbjct: 413 GSCPLMVATDVAARGLDVPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTHHN 472

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           +  A  L    REA   V          +++++++
Sbjct: 473 KGLAGELVNVLREAGQVVPDALLKFGTHVKKKESK 507


>gi|12860207|dbj|BAB31877.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 167 TSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 226

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 227 VIELIV--KLKFMPRNGTGVLILSPTRELAMQTFDVLKELMTHHVHTYGLIMGGSNRSAE 284

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 285 VQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 344

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         ++++ + +D      V+     R  
Sbjct: 345 PARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFL 404

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 405 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 464

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 465 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 523

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         V  I+ +  +++++   FL     +  K       
Sbjct: 524 ELGFL-RYLKQSKVPLNQFDFSWSKVSDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 581

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 582 SHSLKQI 588


>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 398

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 178/358 (49%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLEKLRH-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  +++       +      GGV    +++ L  G  
Sbjct: 66  GQTQKKKRTRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQALIEGLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FS
Sbjct: 126 ILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +   ++IA+     S+I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKSAIHNPFEISIAANQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAAR
Sbjct: 246 TLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+  L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++  +    +     
Sbjct: 306 GIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363


>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74661437|sp|Q6FW42|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
          Length = 725

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 230/465 (49%), Gaps = 19/465 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + + LS  GYV  + +Q A +   L  KD++  A TGSGKT AF + + 
Sbjct: 206 KTFNDLALSRPVMKGLSNLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII 265

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL +  + +   +   + + PTRELA+QV    + +    + +   + +GG+++ ++ 
Sbjct: 266 ERLLYKPAKVA---STRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQE 322

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L+    IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P
Sbjct: 323 QMLKTRPDIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLP 382

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT++  I  L     K  VR+ I    +  + +    V +   D     + 
Sbjct: 383 SKRQTLLFSATMNSRIKQLISLSLKRPVRIMIDPPKQAATKLTQEFVRIRKRDHLKPSLL 442

Query: 238 IL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                    +G K  +VF + +    +   +L      V  L G L+Q++R +++   + 
Sbjct: 443 FNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKS 502

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G S+  + +  
Sbjct: 503 LQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEAS 562

Query: 353 QRRAERLFREANVSVVWEPAPSVEAI-RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R   + ++A   V     P  +A+ R  D  ++ +    ++++   ++ + D+L+ + 
Sbjct: 563 AER--SIVKDAIRGVNDSEIPGSKAVGRNVDWNQVEETNKIVENM---DQTVQDILVEEK 617

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           + ++I    + + + G    +    +     R  F+ +       
Sbjct: 618 EEKEILRAEMEL-KKGENLLKHKDEIQSRPKRTWFQSEKEKKNSK 661


>gi|170736688|ref|YP_001777948.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169818876|gb|ACA93458.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       + +    A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ ++  +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++   +     +L  P+    I G  K  + 
Sbjct: 362 QAQKREVEWHPLAELKPADD----SVLLPPMETLQILGGRKDKIR 402



 Score = 58.1 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G + + IG I V    T+V     V+ D + 
Sbjct: 386 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIERGVARDALR 445

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       K ++++ +  E
Sbjct: 446 KLNAGKIKGKRVKVRLMDEE 465


>gi|167770986|ref|ZP_02443039.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
 gi|167667026|gb|EDS11156.1| hypothetical protein ANACOL_02340 [Anaerotruncus colihominis DSM
           17241]
          Length = 397

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 193/376 (51%), Gaps = 7/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+   G+  LT +QE  +   L  ++++  A TG+GKT AFG+ +   +    
Sbjct: 23  LSEETLKAVERMGFTELTEIQEKAIPVMLEGREIIAKAPTGTGKTCAFGVPIMEKIDPS- 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
                A A  A+ + PTREL  Q+  EL  L        VA   GG  + R+   L+ GA
Sbjct: 82  -----ALAVQAVVLCPTRELCTQIVDELRELAHFRPQVRVAAVYGGQQIDRQINALKRGA 136

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGR+ DH+  + +N+S +   VLDEADEMLD+GF  D+  ILD  PK+R+M+MF
Sbjct: 137 QIVVATPGRMLDHMHRRTINLSKVSIAVLDEADEMLDMGFYKDVCKILDRLPKERQMVMF 196

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATIS  +  +   YQ+D V + +         I    +      +   +  IL  +   
Sbjct: 197 SATISREVMDIGWLYQRDTVELTVEPVKESQPKIHQYMLESVGRQKLADLCYILEANDFH 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC+T+ S +  + +L E  F    L+G++ Q ER+  +   R G   V +ATDVAA
Sbjct: 257 KVMIFCNTKYSTASLSNLLRERGFNADCLNGDMRQSERNQIMARFRSGEISVLVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D++ V + E+    E  LHR GRTGRA ++G+S     ++   R   + R    
Sbjct: 317 RGIDVLDVDAVFNYEIPLENEYYLHRIGRTGRAKKEGVSYIFYGRDELPRLRPIIRYTRS 376

Query: 366 SVVWEPAPSVEAIRER 381
            V+         + E+
Sbjct: 377 RVMELEFNESGELVEK 392


>gi|110834947|ref|YP_693806.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
 gi|110648058|emb|CAL17534.1| ATP-dependent RNA helicase DbpA [Alcanivorax borkumensis SK2]
          Length = 459

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/407 (33%), Positives = 203/407 (49%), Gaps = 14/407 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++P    +   L   GYV +T VQ   L   L+  DV+  A TGSGKT AFGL L 
Sbjct: 4   SSFASLPLTPEMLANLDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGLGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
             L              AL + PTRELA QV  E+  L    G +  +   GG  +  + 
Sbjct: 64  HPLNP------RYYGCQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA IVVGTPGR+  H+    L++  L  +VLDEAD MLD+GF D I  ++  +P 
Sbjct: 118 GSLEHGAQIVVGTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT  P I  LA+ +     +         +S I+ R   V    R+ A+ + 
Sbjct: 178 RRQTLLFSATYPPGIKQLAETF-MSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAVASA 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + +VFC T+         L       + L+ +L Q+ER   L +  +    V 
Sbjct: 237 IACFRPVSCVVFCVTKQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L++VI+AELS  P+  +HR GRTGRAG KG+++ ++     RRA  
Sbjct: 297 VATDVAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIA 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +     + W P  S++  RE +    +Q P     I    K  + 
Sbjct: 357 IEQLQGAPLNWHPLNSLKP-REGEP---MQPPTITLCIGAGRKDKLR 399



 Score = 57.7 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                      +    +  G K K     ++  L   +GI    +G I V     +V + 
Sbjct: 374 KPREGEPMQPPTITLCIGAGRKDKLRPGDILGALTGDAGIAGNQVGKITVTDYQAYVAID 433

Query: 515 ADGVD----LLRRTVKLDKGIQLKYL 536
            +  D     L +     K  ++K L
Sbjct: 434 RESADLALERLLKGKIKGKNRRVKKL 459


>gi|327554931|gb|AEB00819.1| vasa-like protein [Marsupenaeus japonicus]
          Length = 698

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 182/378 (48%), Gaps = 15/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  ++ E + + GY   T VQ+  +   +  +D++  AQTGSGKT AF L +   +L  
Sbjct: 262 DLRPLLLENIVKAGYGCPTPVQKYTIPNVMNGRDIMGCAQTGSGKTAAFLLPMLHHILDN 321

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N     F   + P  L I PTRELA+Q+ RE       +     V  GG +   + + + 
Sbjct: 322 NCPSHAFEEPAQPTGLVICPTRELAIQIMREARKFSHGSVAKCCVAYGGAAGFHQLKTMH 381

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NG HI+V TPGRL D +    +  S+LK +VLDEAD MLD+GF   I+ +++        
Sbjct: 382 NGCHILVATPGRLLDFVEKGKVVFSNLKYLVLDEADRMLDMGFLSSIKTVINHITMTPTE 441

Query: 183 L----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                MFSAT    I  LA  +  + + V + S    ++D+    + V+  D+   +V +
Sbjct: 442 ERITLMFSATFPNEIQELASVFLNNYLFVVVGSVGAANTDVKQEVLSVSKFDKKAKLVEM 501

Query: 239 LRYH----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     +  +VF   +         L E  F+   + G+  Q +R  AL   R G 
Sbjct: 502 CEEILINSEDEKILVFVEQKRVADFVGSYLCEKKFRATTMHGDRFQAQREQALAAFRTGV 561

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--- 351
             + +AT VAARG+D+  + +V++ +L    +  +HR GRTGR G +GMS+    +    
Sbjct: 562 HNILVATAVAARGLDIKGIGVVVNYDLPKEIDEYVHRIGRTGRLGNRGMSISFYDEEVDT 621

Query: 352 -MQRRAERLFREANVSVV 368
            + +   ++  EA  +V 
Sbjct: 622 CLTKDLVKVLSEAEQTVP 639


>gi|157111113|ref|XP_001651396.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108878542|gb|EAT42767.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 603

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/473 (25%), Positives = 215/473 (45%), Gaps = 15/473 (3%)

Query: 4   FENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FE +         +A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF + + 
Sbjct: 110 FETLRGKVSDNTLKAIAEMGFTKMTEIQAKAIPPLLEGRDLIGSAKTGSGKTLAFLIPVV 169

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     +F P +    + I+PTRELA+Q+   L+ L A       + +GG S H E  
Sbjct: 170 ELI--NKLQFKPRNGTGVIIISPTRELAMQIFGVLKELMAHHHHTYGLLMGGASRHTENE 227

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +IVV TPGRL DH          +L+ +V+DE D +L++GF +D++ I+   PK
Sbjct: 228 KLGKGLNIVVATPGRLLDHLKGTPNFLFKNLQCLVIDECDRILEIGFEEDMKQIISILPK 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
           KR+ ++FSAT +     L K   K         +++  + +       ++     R   +
Sbjct: 288 KRQTMLFSATQTSRTEELGKLALKSEPIYVGVDDHKTEATVTGLEQGYIVCPSEKRLLVL 347

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++       V ++ G+  Q +R++      +  +
Sbjct: 348 FTFLKKNRKKKVMVFFSSCLSVKYHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAES 407

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ ++  +  ++ +  +HR GRT R     G ++ ++      
Sbjct: 408 GILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGENICGHALLLLRPEEVE 467

Query: 355 RAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHD 412
             + L ++A V +  +E + S  A  +   + +L    FL+ S +   K  V      H 
Sbjct: 468 FLKYL-KQAKVPLNEFEFSWSKIADIQLQLENLLSKNYFLNQSGKLAFKSYVRAYEGHHM 526

Query: 413 PEKIAAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            +    G L + +          P V           D RA   G G      
Sbjct: 527 KDVFNVGNLDLVKVAKNFGFTQPPYVDFGKSYKIQNSDRRAGNRGLGHFKTMN 579


>gi|161613874|ref|YP_001587839.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168230079|ref|ZP_02655137.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471340|ref|ZP_03077324.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|161363238|gb|ABX67006.1| hypothetical protein SPAB_01610 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457704|gb|EDX46543.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335550|gb|EDZ22314.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 457

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PETRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.8 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 412

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/349 (34%), Positives = 188/349 (53%), Gaps = 2/349 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  GY + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA 
Sbjct: 7   SLNSTLVNTLASLGYESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLAL 66

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +     +      AL + PTRELAVQV +        T + V +  GGVS+  +      
Sbjct: 67  SPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++ TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L
Sbjct: 127 GIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI +L+K   +D   + +A  N   ++I+     V    +   + +++R   
Sbjct: 187 LFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSKN 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDV
Sbjct: 247 WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           AARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q  
Sbjct: 307 AARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSTGLAITLFSQED 355


>gi|114778501|ref|ZP_01453345.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
 gi|114551226|gb|EAU53785.1| putative ATP-dependent RNA helicase DbpA [Mariprofundus
           ferrooxydans PV-1]
          Length = 459

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 8/376 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L+  GY  +T +Q+  L   L  +DV+   QTGSGKT AFGL L   L   
Sbjct: 10  SLRPDLLDNLATLGYEAMTPIQQQSLPDILAGRDVIAQGQTGSGKTAAFGLGLLQKLDIT 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                      +L + PTRELA QV +E+  L  K   +  +   GG+    +   L++G
Sbjct: 70  KPHV------QSLVLCPTRELADQVAKEIRKLARKLANIKVLTLCGGMPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+    L +  +  +VLDEAD ML++GF+  ++ I+   PK+R+ L+
Sbjct: 124 AHIIVGTPGRIEDHMNRGTLKLDRVTTLVLDEADRMLEMGFQSVLDSIIGKIPKQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++AK      V V +AS +   S   +   +     R  A+  +L  H  
Sbjct: 184 FSATFPDQIQSVAKRIMDKPVMVAVASTHDDSSIEQHFYKVSDDEQRMTALRLLLLQHKP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+A      K L  H F  +AL+G+L Q++R   +    +    V +ATDVA
Sbjct: 244 VSTLVFCNTKAETEAVAKTLVWHGFSALALNGDLEQRDRDQVMVRFANKSISVLVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L+ VI+  ++ +PE  +HR GRTGRAG KG++  +  +N   R   L     
Sbjct: 304 ARGLDIDALDAVINYHIAHDPEVHVHRIGRTGRAGSKGVACSLYREN-PYRMTVLGDYLG 362

Query: 365 VSVVWEPAPSVEAIRE 380
             +  E  P  E +++
Sbjct: 363 RVIEGETLPPAELLKQ 378



 Score = 67.3 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +  G KQK     ++  L   +GI    +G I +  + ++V VS D V    R +
Sbjct: 385 MTTLQIGGGKKQKIRPGDILGALTGEAGIAGSQVGKIHIMDNWSYVAVSRDAVKTAIRKL 444

Query: 526 KLDK 529
              K
Sbjct: 445 TAGK 448


>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|160358660|sp|A7EML8|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
 gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 482

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 123/372 (33%), Positives = 194/372 (52%), Gaps = 10/372 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 56  KSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPIL 115

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL   D+  P      L +APTRELA Q+ +  E L +   V  AV +GG+ +  +  
Sbjct: 116 QSLL---DKPQPLFG---LVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAI 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++  LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 170 ALGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPR 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSATIS  + +L +   KD +RV+I+S   Q         + + L  +D  ++ 
Sbjct: 230 ERRTYLFSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHKDTYLIY 289

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++AI+F  T     R   +L    F  + L G+LSQ  R  AL   R G   +
Sbjct: 290 LLNEFAGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREI 349

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ ++  + +  +HR GRT RAG+ G ++  + Q       
Sbjct: 350 LVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWM 409

Query: 358 RLFREANVSVVW 369
           R+          
Sbjct: 410 RIEAALGKKQEE 421


>gi|24374367|ref|NP_718410.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24348927|gb|AAN55854.1|AE015722_4 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 449

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 179/381 (46%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSS 176
            L    H +V TPGR+ DH+  K L ++ L+ ++LDEAD MLDLGF      I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +         +            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ +
Sbjct: 239 RLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++      +        +EA
Sbjct: 359 KKVQLFLRKTFEISVIKGLEA 379


>gi|56413419|ref|YP_150494.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362342|ref|YP_002141979.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127676|gb|AAV77182.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093819|emb|CAR59302.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 457

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVS------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGR  DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRQLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|259908378|ref|YP_002648734.1| ATP-dependent RNA helicase DbpA [Erwinia pyrifoliae Ep1/96]
 gi|224964000|emb|CAX55505.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
 gi|283478319|emb|CAY74235.1| ATP-dependent RNA helicase dbpA [Erwinia pyrifoliae DSM 12163]
          Length = 459

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   + A            AL + PTRELA QV +EL  L   T  +  + + G      
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGA 114

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  S
Sbjct: 115 QRDSLLHAPHIVVGTPGRILDHLKRETLKLDAISTLVLDEADRMLEMGFREDIDTIISHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++++ Q+D + +     +   +  +         ++  A++
Sbjct: 175 PQARQTLLFSATWPQAIAQISQSIQRDPLTIETGDVSDLPAI-EQTFYEAGAREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +       L G+L Q+ER   L    +G  R
Sbjct: 234 GLLSERQPSSCVVFCNTKRECDEIAYALDKAQISAQPLHGDLEQRERDRMLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       +VW    +++A+    A R L   +   S++G  K  + 
Sbjct: 354 HALEDYLQQKLVWCNLSALKAV----AARPLLAEMVTVSLEGGRKAKIR 398



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDL 520
                SL  G K K     ++  L    G+N   +G I +   L +V    E++   +  
Sbjct: 383 EMVTVSLEGGRKAKIRPGDILGALTGEGGLNGDQVGKIDIASTLAYVAIRRELARKVMQQ 442

Query: 521 LRRTVKLDKGIQLKYL 536
           L++     K  + + L
Sbjct: 443 LQQVKIKGKSCRARLL 458


>gi|82546134|ref|YP_410081.1| ATP-dependent RNA helicase RhlB [Shigella boydii Sb227]
 gi|187732305|ref|YP_001882395.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
 gi|123558220|sp|Q31UK5|RHLB_SHIBS RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739553|sp|B2TU12|RHLB_SHIB3 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81247545|gb|ABB68253.1| putative ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187429297|gb|ACD08571.1| ATP-dependent RNA helicase RhlB [Shigella boydii CDC 3083-94]
          Length = 421

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|222617461|gb|EEE53593.1| hypothetical protein OsJ_36838 [Oryza sativa Japonica Group]
          Length = 676

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I   L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 153 ISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHN 212

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ SP   PLA+ +APTRELA QV RE       + V      GG  + ++ R L  G  
Sbjct: 213 EKNSPGKFPLAIVLAPTRELAKQVEREF---SDSSNVETICVYGGTPISQQIRQLNYGVD 269

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 270 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 329

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  L + Y K+ V +++  E+ Q          +A        V    I  +  
Sbjct: 330 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 389

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +        AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 390 GGKCIVFTQTKRDADRLSYTMGRSFQCQ-ALHGDITQAQRERTLKGFREGHFNILIATDV 448

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ +      R    +  + 
Sbjct: 449 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDV 508

Query: 364 NVSVVWEPAPSVE 376
                  P  +VE
Sbjct: 509 GCKFTELPKINVE 521


>gi|122227760|sp|Q0ILZ4|RH9_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 9
          Length = 628

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I   L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 105 ISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHN 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ SP   PLA+ +APTRELA QV RE       + V      GG  + ++ R L  G  
Sbjct: 165 EKNSPGKFPLAIVLAPTRELAKQVEREF---SDSSNVETICVYGGTPISQQIRQLNYGVD 221

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  L + Y K+ V +++  E+ Q          +A        V    I  +  
Sbjct: 282 ATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +        AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRSFQCQ-ALHGDITQAQRERTLKGFREGHFNILIATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ +      R    +  + 
Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDV 460

Query: 364 NVSVVWEPAPSVE 376
                  P  +VE
Sbjct: 461 GCKFTELPKINVE 473


>gi|157819755|ref|NP_001102328.1| hypothetical protein LOC364073 [Rattus norvegicus]
 gi|149040979|gb|EDL94936.1| rCG20177 [Rattus norvegicus]
          Length = 659

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/390 (28%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 177 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 236

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 237 LSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 356

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 417 VVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 537 GLATSFFNERNINITKDLLDLLVEAKQEVP 566


>gi|127513705|ref|YP_001094902.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126639000|gb|ABO24643.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 451

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/457 (27%), Positives = 203/457 (44%), Gaps = 15/457 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P   ++ +A    GY  LT VQ  ++   L  +D++  AQTG+GKT AF   L   
Sbjct: 3   FDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLLQR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL +       S   AL + PTRELA+QV   +      T +      GG +++ +R+ L
Sbjct: 63  LLNQPRAIGQLS---ALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  I+V TPGRL D +    L++  +  +++DEAD MLD+GF  DIE           
Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT +P +  LA     D       +       I+ +   +    +   +  ++  
Sbjct: 180 TMLFSATFTPEVKALATKM-LDNPEWINVTSASSGPQIEQKIYPLDARRKAELLAELIGR 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF +T+ S  R  + L     +     G+ +Q  R+ AL+  + G  RV +AT
Sbjct: 239 NNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  L LVI+ EL   P++ +HR GRTGRAG  G+S+  + +  +     +  
Sbjct: 299 DVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGAIEA 358

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
               ++  E  P  E +      R  +    + S     K+         D         
Sbjct: 359 LIGKTLPREVQPGYE-MGAPLPARYRELDTRVTSKAAQPKRGKGQKFGSQDG-------- 409

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
           R  ++   AP+   P    S      D +R      G
Sbjct: 410 RRGQSRAKAPQRKAPQRKTSSDKASNDKARRPSSDKG 446


>gi|74181660|dbj|BAE32549.1| unnamed protein product [Mus musculus]
          Length = 658

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 178 IENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 237

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 238 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG    ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 298 VVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 357

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 358 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L +  +   ++ G+ SQ+
Sbjct: 418 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVP 567


>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
 gi|74896924|sp|Q54IV3|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
           Full=DEAD box protein 42
 gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
          Length = 986

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 190/372 (51%), Gaps = 3/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
              ++ +A++++     T +Q+  +   L  +D++  A+TGSGKT  F     S ++ + 
Sbjct: 312 FDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIM-DQ 370

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL +APTRELA Q+  E         +   V  GGVS  ++ ++L+ G  
Sbjct: 371 PYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCE 430

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I+ K   ++ +  +VLDEAD+M D GF   +  I++     R+ L+FS
Sbjct: 431 IIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFS 490

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH--GA 244
           AT  P +   A+    D ++++I      +SDI     ++         +          
Sbjct: 491 ATFKPNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQ 550

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F ST+ +V + +  L +  FQ   L G+ +Q ERS  +Q  ++G+  + IATDVA
Sbjct: 551 GSVLIFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVA 610

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P ++ V++ + S + E+  HR GRTGRAG  G++  +I       +  L +   
Sbjct: 611 ARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLE 670

Query: 365 VSVVWEPAPSVE 376
            +  + P   ++
Sbjct: 671 SASQFVPPELID 682


>gi|304310488|ref|YP_003810086.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
 gi|301796221|emb|CBL44429.1| ATP-dependent RNA helicase [gamma proteobacterium HdN1]
          Length = 527

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 122/381 (32%), Positives = 198/381 (51%), Gaps = 4/381 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY   T VQ+  +   L+  D+L S+ TGSGKT AF L     ++ + 
Sbjct: 8   LNTRLVSTLQALGYEQATPVQQLAIPAALQGGDLLASSHTGSGKTAAFLLPCLQRMIDDP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGA 125
              S A+    L + PTRELA+Q+ +       +      A  +GG S   + +DL    
Sbjct: 68  KPKSGAA--RMLVLTPTRELALQIEKAARNYGREVRRLNTACLVGGSSYFMQLKDLGRQP 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL DHI    +++S ++ +VLDEAD MLD+GF DDIE I+  +  +R+ ++F
Sbjct: 126 EILIATPGRLLDHIERGRVDLSQIETLVLDEADRMLDMGFSDDIEAIVAETNPERQTMLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHGA 244
           SAT+   +  LA+   +D  R+ I  +  Q + I+ + ++    + ++  +  +LR    
Sbjct: 186 SATMEGVVGALARKLTRDPQRIEIEKKPEQQAKIEQKLMMADDLAHKNRLLGALLRDESL 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A+VF +T+ +    +  L +  F V AL G++ Q+ R+  L  +R GR  + +ATDVA
Sbjct: 246 NQAVVFTATKRAAEDLSNTLRDEGFSVEALHGDMHQKLRNRTLTKLRQGRIGILVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  +  VI+ +     E+ +HR GRTGRAGR G +V +     +R    + R   
Sbjct: 306 ARGIDVVGISHVINYDPPRQVEDYVHRIGRTGRAGRTGTAVTLAEFKERRIIRDIERFTG 365

Query: 365 VSVVWEPAPSVEAIRERDAQR 385
             +     P +E  R  +  R
Sbjct: 366 QPIEVTVIPGMEPTRREERPR 386


>gi|238504232|ref|XP_002383347.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690818|gb|EED47167.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 696

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 118/482 (24%), Positives = 216/482 (44%), Gaps = 24/482 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +   G+  +T VQ   + P L  +DVL +A+TGSGKT++F +     L    
Sbjct: 217 LSEKTMKGIEGMGFETMTEVQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAIEML--SA 274

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +   A+ ++PTRELA+Q+  ++  L A       + IGG +   E   L  G +
Sbjct: 275 LRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANRRAEAEKLMKGVN 334

Query: 127 IVVGTPGRLCDHIRGKG----------LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++V TPGRL DH++             ++  +L  + +DEAD +L++GF D++  I    
Sbjct: 335 LLVATPGRLLDHLQNTQGFVFKNLRTLISTINLFRIAIDEADRILEVGFEDEMRQIAKIL 394

Query: 177 PKKRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           P + R  M  +            ++       + V+   E+     ++   V+     R 
Sbjct: 395 PSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRF 454

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L+ +  K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +
Sbjct: 455 LLLFSFLKRNLRKKIIVFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQQKRTNTFFEFCN 514

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQN 351
            +    I TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +
Sbjct: 515 AKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGRSLMFLQPS 574

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                + L +EA V VV    P+ + +  +   ++++    +L+    +  +      A 
Sbjct: 575 EVGFLKHL-KEARVPVVEFDFPTQKIVNVQSQLEKLIGQNYYLNKSAKEGYRSYLQAYAS 633

Query: 411 HDPEKI----AAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           H    +        +++ +  G   P  I      S +D+     R +    GS+   K 
Sbjct: 634 HSLRSVFDVHKLDLVKVSKGFGFSTPPRIDIQLGSSLKDKPPQGRRNYGSQPGSKFKRKH 693

Query: 466 SS 467
           + 
Sbjct: 694 ND 695


>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 398

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 179/358 (50%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LCASLTDAIDTLGYPKPTRIQTQAIPVILEGRDLIAAAQTGTGKTASFVLPMLEKLRH-- 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  +++       +      GGV    +++ L  G  
Sbjct: 66  GQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKAQKQALIEGLD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FS
Sbjct: 126 ILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +   ++IA++    S+I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAAR
Sbjct: 246 TLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+  L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++  +    +     
Sbjct: 306 GIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363


>gi|327400905|ref|YP_004341744.1| DEAD/DEAH box helicase domain-containing protein [Archaeoglobus
           veneficus SNP6]
 gi|327316413|gb|AEA47029.1| DEAD/DEAH box helicase domain protein [Archaeoglobus veneficus
           SNP6]
          Length = 389

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 119/366 (32%), Positives = 189/366 (51%), Gaps = 9/366 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   G    T +Q   +    +  DV+  ++TGSGKT+AF + +       
Sbjct: 9   NLSEGMLGLLEMHGIEEPTEIQTKAIPLVEKGFDVVAQSETGSGKTLAFAIPIIEA---- 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL + PTRELA Q+  E        G+ +A   GGV +  + RDL   A
Sbjct: 65  ---AETGKGIQALVLTPTRELANQIENEFRRFSRHKGLRIANIHGGVPIEPQIRDL-RRA 120

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+R K ++ S ++  V+DEAD MLD+GF DD++ I+  +PK R+ L+F
Sbjct: 121 DVVVGTPGRLLDHVRRKTVDFSRVEYFVIDEADRMLDMGFIDDVKAIMRCTPKTRQSLLF 180

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI P +  LA  Y     +     E      ++     V  S++ + +V++LR    K
Sbjct: 181 SATIPPEVRALASRY-MKNPKTIRTKELVDPKLLNQYYYDVDDSEKFSMLVHLLRKENPK 239

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF + R +     K L  H F+   L G L+Q +R   ++  R G  RV +ATDVA+
Sbjct: 240 KALVFTNMRKTSDIVAKNLFMHGFKASVLHGGLTQSKRDRMMERFRKGEIRVLVATDVAS 299

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  +  V + ++ S  E+ +HR GRT RAG+ G +V ++ +       R+  +  +
Sbjct: 300 RGLDVKGVTHVFNYDVPSKAEDYIHRIGRTARAGKNGKAVTILGRKDHGSFRRIMVKYGL 359

Query: 366 SVVWEP 371
           ++    
Sbjct: 360 TIERLE 365


>gi|313801696|gb|EFS42936.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313809686|gb|EFS47420.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313827484|gb|EFS65198.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830023|gb|EFS67737.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313838410|gb|EFS76124.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314918026|gb|EFS81857.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314920401|gb|EFS84232.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314956494|gb|EFT00782.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957338|gb|EFT01441.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314967660|gb|EFT11759.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314975747|gb|EFT19842.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|315095792|gb|EFT67768.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315098853|gb|EFT70829.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|327442653|gb|EGE89307.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327452701|gb|EGE99355.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|327453458|gb|EGF00113.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|328761493|gb|EGF75017.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL099PA1]
          Length = 564

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|256825728|ref|YP_003149688.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689121|gb|ACV06923.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
          Length = 499

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/383 (34%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  I   I  AL   G  +   +Q   L   L  +D++  A+TG+GKT+ FG+ + 
Sbjct: 4   KTFADFGIHPDIVAALEAGGITHPFPIQSMTLPVALDRQDIIGQAKTGTGKTLGFGVPMV 63

Query: 60  STLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  N    D+     AP ALA+APTRELA+QV  +LE   A+ GV V    GG +  
Sbjct: 64  QNVVGPNHEGYDQLERPGAPQALAVAPTRELALQVATDLERAAARLGVRVLTVYGGRAYE 123

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  IVVGTPGRL D      L ++H + VVLDEADEMLDLGF  D+E +L  
Sbjct: 124 PQIEALERGVEIVVGTPGRLIDLAERGHLTLAHARTVVLDEADEMLDLGFLPDVEKLLAM 183

Query: 176 SPKKRRMLMFSATISP----AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +P  R  ++FSAT+                       +         ID         D+
Sbjct: 184 TPAGRHTMLFSATMPGAVVAMARRYMNQPTHIRAMEEVPGAGATVEAIDQFVYRAHAMDK 243

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  +L+  G    IVF  T+ + ++  + L E  F   A+ G+L Q  R  AL+  R
Sbjct: 244 VEMVARLLQSEGRGLTIVFTRTKRTAAKVAEQLVERGFAAAAIHGDLGQGAREQALRAFR 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  V++ +   + +  LHR GRTGRAG+ G++V ++  +
Sbjct: 304 TGKVDVLVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRIGRTGRAGKNGVAVTLVDWD 363

Query: 352 MQRRAERLFREANVSVVWEPAPS 374
              R   + R   +    EPA +
Sbjct: 364 DLHRWAVINRALELG-APEPAET 385


>gi|195332387|ref|XP_002032880.1| GM21012 [Drosophila sechellia]
 gi|194124850|gb|EDW46893.1| GM21012 [Drosophila sechellia]
          Length = 782

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 200/402 (49%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY   T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|332204769|gb|EGJ18834.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA47901]
          Length = 447

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKDRQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 614

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 139/373 (37%), Positives = 211/373 (56%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I + L+ +G   L  +Q+A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 112 ISSEIVKRLAAKGITKLFPIQKAVLEPAMQGKDMVGRAKTGTGKTLAFGIPIMDAIIRHN 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   PLA+ +APTRELA QV +E       + +      GG  + ++ R L  G  
Sbjct: 172 EINKPGRLPLAICLAPTRELAKQVDKEFVD---SSPLQTLCVYGGTPIQQQMRALDYGVD 228

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E IL+  P KR+ LMFS
Sbjct: 229 VVVGTPGRVIDLLKRGALNLSMVQFVVLDEADQMLSVGFDEDVEIILNKVPPKRQTLMFS 288

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+ P I  L + Y KD V V++  E+ Q        + +A  +     V    I  +  
Sbjct: 289 ATMPPWIRKLMQKYLKDPVIVDLVGEDDQKLAEGISLLSIATENHAKPAVLAQLIQDHAK 348

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +   +    AL G+++Q +R   LQ  R+GR    IATDV
Sbjct: 349 GGKCIVFTQTKRDADRLSYTMGRTVQCQ-ALHGDITQGQRERTLQGFREGRFSTLIATDV 407

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL +N E  +HRSGRTGRAG+KG+++ +   N  R    +  + 
Sbjct: 408 AARGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGIAIVMYGYNQSRAVRGIENDV 467

Query: 364 NVSVVWEPAPSVE 376
                  P  +VE
Sbjct: 468 GGKFQELPKINVE 480


>gi|320185441|gb|EFW60210.1| ATP-dependent RNA helicase RhlB [Shigella flexneri CDC 796-83]
          Length = 421

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEILEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|170760702|ref|YP_001787100.1| DEAD-box ATP dependent DNA helicase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407691|gb|ACA56102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 421

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAEAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNIDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+  V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|71418343|ref|XP_810822.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70875414|gb|EAN88971.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   +   GY   T++Q+  + P  + +D++  A +GSGKT AF + L  
Sbjct: 24  TFEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                    S       L ++PTRELA+Q       +    G+     IGG SV  + R 
Sbjct: 84  VCQ------SALRETQGLVLSPTRELALQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRR 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IV GTPGR+ D I+ + L ++HLK +VLDEADEML  GF+  I  I    P  +
Sbjct: 138 LESGVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPPLQ 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +      +    K   +    +    E    S + Y   +    ++   + ++  
Sbjct: 198 VVLVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLYD 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A++FC+TR  V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+
Sbjct: 258 TLTIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLIS 317

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ +RGID+  + LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R    + 
Sbjct: 318 TDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDVE 377

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 378 QFYATQIEELPA 389


>gi|15900655|ref|NP_345259.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           TIGR4]
 gi|111658348|ref|ZP_01409036.1| hypothetical protein SpneT_02000488 [Streptococcus pneumoniae
           TIGR4]
 gi|149025531|ref|ZP_01836464.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|168484834|ref|ZP_02709779.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225854268|ref|YP_002735780.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|303261432|ref|ZP_07347380.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303268729|ref|ZP_07354519.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|307127689|ref|YP_003879720.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|14972235|gb|AAK74899.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae TIGR4]
 gi|147929403|gb|EDK80400.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP23-BS72]
 gi|172041993|gb|EDT50039.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC1873-00]
 gi|225722536|gb|ACO18389.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae JJA]
 gi|302637566|gb|EFL68053.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302641789|gb|EFL72146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS458]
 gi|306484751|gb|ADM91620.1| ATP-dependent RNA helicase [Streptococcus pneumoniae 670-6B]
 gi|332077176|gb|EGI87638.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA17545]
          Length = 447

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|283786193|ref|YP_003366058.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
 gi|282949647|emb|CBG89266.1| ATP-dependent RNA helicase [Citrobacter rodentium ICC168]
          Length = 444

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 185/389 (47%), Gaps = 10/389 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGEAIKDFAERLLEDPVEVSASPSTRERKKIHQWYYRADNYEHKFELLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A   IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRTIVFVRKRERVHELAEQLRLAGISNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLM 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRER 381
                 +       V+ E  P+  A  E+
Sbjct: 361 LKIGRYIEEPLKARVIDELRPTTRAPSEK 389


>gi|148652579|ref|YP_001279672.1| DEAD/DEAH box helicase domain-containing protein [Psychrobacter sp.
           PRwf-1]
 gi|148571663|gb|ABQ93722.1| DEAD/DEAH box helicase domain protein [Psychrobacter sp. PRwf-1]
          Length = 383

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 186/376 (49%), Gaps = 9/376 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  ++++ G+  LT +Q  IL   L  +D +  AQTG+GKT  F + +  
Sbjct: 6   TFADLSLSDSILRSVNDLGFTELTGIQAQILPHTLAGQDAIGQAQTGTGKTATFLITIIE 65

Query: 61  TLLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHR 116
            LL     +D       P AL +APTRELA Q+  +   L   T    V V  G     +
Sbjct: 66  ALLKRPFADDEMRYIGEPRALILAPTRELANQIYDDAIALTKHTSLHSVCVMGGIDYDKQ 125

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                ++   I++ TPGRL D I    + +  ++A VLDEAD MLD+GF  DI+ ++   
Sbjct: 126 IAALDKSYTDILIATPGRLIDLIYKGHVFLDRIEAFVLDEADRMLDMGFIPDIKRLMRYM 185

Query: 177 PKKRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           P         FSAT +  +  LA  +  + V V I  E++    ++    L+  +D+  A
Sbjct: 186 PPNTDRQSLLFSATFNQDVMNLAYQWLMNPVFVEIEPEHKTSDLVEQHFYLLTEADKHQA 245

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ IL     K  IVF + +  V R    L+      V LSG++ Q +R   L   ++G 
Sbjct: 246 LIQILAQPETKKVIVFANRKDQVKRLYTKLSADHNV-VMLSGDVDQAKRERYLDKFKNGN 304

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A+V +ATDVA RGI + D+  V++  L   P++ +HR GRTGRAG+KG+S+  + ++   
Sbjct: 305 AKVLVATDVAGRGIHVDDISHVVNYTLPDQPDDYVHRIGRTGRAGQKGISISFVSEDDAF 364

Query: 355 RAERLFREANVSVVWE 370
               +    +  +  E
Sbjct: 365 NLPAIEAHLDRHLKLE 380


>gi|120554694|ref|YP_959045.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324543|gb|ABM18858.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 423

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 189/368 (51%), Gaps = 5/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+S+ G+   T +Q   L   L  +D++  AQTG+GKT AF +    +LL  
Sbjct: 17  NLDKRLLDAISKIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQ 122
             +++   AS P  LA+APTRELA+Q+ ++ E L   TG  V  V  G     +  +   
Sbjct: 77  PIDEKERFASEPRVLALAPTRELAMQIAKDAEQLCHYTGHNVVTVVGGMNYDKQREQLQN 136

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+     K   
Sbjct: 137 EIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKDER 196

Query: 183 LM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
               FSAT +  +  LA  + ++A  V I  E +    ++    LV+ +++   +VN L+
Sbjct: 197 QTLLFSATFNQDVLNLASMWTRNAEFVEIEPEQKTAERVEQTVFLVSDNEKLPVLVNYLK 256

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AIVF + R       + L     +V  +SGE++Q +R   L   + G+ +V +A
Sbjct: 257 RPEVEKAIVFANRRDQCRDLEEDLKNQGVKVALMSGEIAQNKRLKTLDQFKKGQIQVLVA 316

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+SV    +        + 
Sbjct: 317 TDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKTGVSVSFAGEEDAFALPEIE 376

Query: 361 REANVSVV 368
           +  +  + 
Sbjct: 377 KYISQKLK 384


>gi|126343379|ref|XP_001380649.1| PREDICTED: similar to Gu protein [Monodelphis domestica]
          Length = 902

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 115/420 (27%), Positives = 196/420 (46%), Gaps = 20/420 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 341 FSNFPISEETIQLLKARGVTYLFPIQAKTFHHVSSGKDLIAQARTGTGKTFSFAIPLVEK 400

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  ++       AP  L +APTREL++QV ++   +  K    VA   GG   + +   +
Sbjct: 401 LQGDSQPRPRGRAPKILVLAPTRELSIQVSKDFSDITKKL--TVACFYGGTPYNGQIDLI 458

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+VGTPGR+ DH++   L+++ ++ VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 459 RRGIDILVGTPGRIKDHLQNGRLDLTKVQHVVLDEVDQMLDMGFAEQVEEILTVAYKKDS 518

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-- 239
                  +  A               +   +         +A +       N   +    
Sbjct: 519 EDNPQTLLFSATCPHWVYDVAKKYMKSTYEQVDLIGKKTQKAAVTVEHLAINCHWSQRAA 578

Query: 240 --------RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                           I+FC T+      +   +          G++ Q++R   LQ  R
Sbjct: 579 VIGDVIQVYSGSHGRTIIFCETKKEAQELSLNESIKQDAQSLH-GDIPQKQREITLQGFR 637

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G+  V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +    + 
Sbjct: 638 NGKFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQKK 697

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQD--PLFLDSIQGDEKKMVDV 406
            Q +  ++ R+A ++      PS   I +   +DA R L    P  +++ +   +K++D 
Sbjct: 698 EQHQLAQVERQAGITFKRVGVPSASEIIKASSKDAIRFLDSVPPAAINNFRQTAQKLIDE 757


>gi|323448840|gb|EGB04734.1| hypothetical protein AURANDRAFT_70371 [Aureococcus anophagefferens]
          Length = 383

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 187/381 (49%), Gaps = 23/381 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +   G+   +++Q+  + P +  +DV+  +Q+G+GKT  F +A+
Sbjct: 23  IDSFEGMALREDLLRGIYAYGFERPSAIQQRAITPIVAGRDVIAQSQSGTGKTAVFCIAM 82

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       S  +    L I+PTRELA Q  +    L     V    CIGG S+  + 
Sbjct: 83  LQVLE------SATNETQMLTISPTRELAEQTQKVCLALGDYMNVQCHACIGGKSIGEDI 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  G  IV GTPGR+ D I+ + L   +LK +V+DEADEML+ GF++ I  I    P 
Sbjct: 137 RRLDYGVQIVSGTPGRVFDMIKRRNLRTRNLKMLVIDEADEMLNRGFKEQIYDIYRYLPP 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  + + +  + VRV +  +      I    V +     + + + +
Sbjct: 197 STQVVLISATMPQEVLDMTRKFMNEPVRVLVKRDELTLEGIKQFFVAVEREEWKFDTLCD 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V               A+ G++ Q+ER   +   R G +RV
Sbjct: 257 LYDTLTITQAVIFCNTKRKV--------------SAMHGDMPQRERDAIMAEFRGGASRV 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+  RG+D+  + LVI  +L +N E  +HR GR+GR GRKG+++  +  +  R   
Sbjct: 303 LIATDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGVAINFVKNDDVRILR 362

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 363 DIEQYYSTQIDEMPMNVADLI 383


>gi|332358037|gb|EGJ35870.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1056]
          Length = 447

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 199/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I  V     R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWVVNEKRRKTKRAENRARGRAERKAKR 444


>gi|322614908|gb|EFY11833.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619348|gb|EFY16228.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623160|gb|EFY20002.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628449|gb|EFY25237.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634857|gb|EFY31588.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638578|gb|EFY35273.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640887|gb|EFY37535.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645384|gb|EFY41912.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651731|gb|EFY48103.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654369|gb|EFY50691.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661210|gb|EFY57436.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662662|gb|EFY58869.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667727|gb|EFY63887.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671861|gb|EFY67982.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677094|gb|EFY73158.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680244|gb|EFY76283.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685327|gb|EFY81323.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194310|gb|EFZ79506.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199386|gb|EFZ84480.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205860|gb|EFZ90823.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217187|gb|EGA01908.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227265|gb|EGA11435.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232049|gb|EGA16156.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234576|gb|EGA18663.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238029|gb|EGA22088.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243370|gb|EGA27389.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246177|gb|EGA30162.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253678|gb|EGA37505.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259111|gb|EGA42757.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260421|gb|EGA44034.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266491|gb|EGA49978.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271215|gb|EGA54642.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 457

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++   Q+  +R+ I + +   +             + + + 
Sbjct: 175 PETRQTLLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSVHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|307109616|gb|EFN57854.1| hypothetical protein CHLNCDRAFT_6836 [Chlorella variabilis]
          Length = 461

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 6/377 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+       +  A+++ GY   T++Q   L   L  +DVL  A+TGSGKT AF L +
Sbjct: 62  IQTFKQCGFDGPLMAAITKAGYQKPTAIQAQALPAALCGRDVLGIAKTGSGKTAAFVLPM 121

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ + +APTRELA Q+ +E         + VA   GG+S H++ 
Sbjct: 122 IVHIM-DQPELQKGEGPIGVIVAPTRELAEQIHKETRRFSKAYNLGVAAAFGGLSKHQQF 180

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +DL+ G  + V TPGR+ D IR K  N+     +V DEAD M D+GF   +  I+     
Sbjct: 181 KDLKAGCEVAVCTPGRMIDLIRMKACNMKRATYLVFDEADRMFDMGFEPQVRSIMGQIRP 240

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   +  LA +     VR+ +      + DI     +V         +  
Sbjct: 241 DRQTLLFSATMPRKVERLAGDALTSPVRITVGEVGGANEDIKQVVEVVHDLGSKQKWLLD 300

Query: 239 LRYHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                    + +VF + +A V      L     +V A+ G++ Q  R + L   + G   
Sbjct: 301 RLQRFIDDGDVLVFANQKARVDELAAALQAAGAKVAAIHGDMDQHTRMHTLADFKAGAYH 360

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
             +ATDVAARG+D+  ++ V++ + + + +  +HR GRTGRAG + G++  ++  +  R 
Sbjct: 361 ALVATDVAARGLDIKSIKTVVNYDAAKDIDTHVHRIGRTGRAGDKDGVAYTLLLPHETRI 420

Query: 356 AERLFREANVSVVWEPA 372
           A  L +    +    PA
Sbjct: 421 AGDLVQNLATAGQEVPA 437


>gi|62180220|ref|YP_216637.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224583853|ref|YP_002637651.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911959|ref|ZP_04655796.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|62127853|gb|AAX65556.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224468380|gb|ACN46210.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322714692|gb|EFZ06263.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.8 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|14861844|ref|NP_149068.1| putative ATP-dependent RNA helicase Pl10 [Mus musculus]
 gi|130256|sp|P16381|DDX3L_MOUSE RecName: Full=Putative ATP-dependent RNA helicase Pl10
 gi|200389|gb|AAA39942.1| PL10 protein [Mus musculus]
 gi|26325502|dbj|BAC26505.1| unnamed protein product [Mus musculus]
 gi|148681106|gb|EDL13053.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223460348|gb|AAI39288.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
 gi|223461116|gb|AAI39287.1| DNA segment, Chr 1, Pasteur Institute 1 [Mus musculus]
          Length = 660

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/390 (28%), Positives = 191/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 178 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 237

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 238 LSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 298 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 357

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 358 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  +D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 418 VVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 538 GLATSFFNERNINITKDLLDLLVEAKQEVP 567


>gi|332194953|gb|AEE33074.1| translation initiation factor 4A-2 [Arabidopsis thaliana]
          Length = 407

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 121/362 (33%), Positives = 185/362 (51%), Gaps = 8/362 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + E L  RG+   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L        
Sbjct: 46  LQENLL-RGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYA----- 99

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ G H+VVG
Sbjct: 100 -LLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVG 158

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ 
Sbjct: 159 TPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 218

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIV 249
           P    + + +    VR+ +  +      I      +     +   + ++        +++
Sbjct: 219 PEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVI 278

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID
Sbjct: 279 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 338

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  + LVI+ +L + PEN LHR GR+GR GRKG+++  +  + QR    + +  NV V  
Sbjct: 339 VQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEE 398

Query: 370 EP 371
            P
Sbjct: 399 LP 400


>gi|313771958|gb|EFS37924.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
          Length = 564

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWGELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLAVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L    F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDARGFKPRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|270262252|ref|ZP_06190524.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
 gi|270044128|gb|EFA17220.1| hypothetical protein SOD_b04600 [Serratia odorifera 4Rx13]
          Length = 460

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 206/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L+ +DV   A+TGSGKT AFG+ L   +    
Sbjct: 11  LPAEQLANLNELGYAEMTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 71  ------VAAQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGPQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKKTLVLDELKVLVLDEADRMLDMGFADDIDDVISYTPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+D +      +    + I+ R        R   +V+ +R++   
Sbjct: 185 SATYPSGIERISARVQRDPL-NVEVDDGDDQTSIEQRFYETTRDQRPAVLVSAIRHYQPS 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQSVYEALEARGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +LELV++ EL+ +PE  +HR GRTGRAG  G+++ +       RA  +      
Sbjct: 304 RGLDIKELELVVNYELAFDPEVHVHRIGRTGRAGLNGLAISLCTPQEMERAHAIEEYQRK 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +V W P   +       +   L+  +    I G  K  + 
Sbjct: 364 AVNWAPVSEL----SGASNTTLEAEMVTLCIDGGRKAKIR 399



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV- 513
            G  +           +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 374 SGASNTTLEAEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPVHAYVAIR 433

Query: 514 ---SADGVDLLRRTVKLDKGIQLKYL 536
              +   +  L++     K  +++ L
Sbjct: 434 KASARKALQQLQQGKIKGKNCKVRLL 459


>gi|164687249|ref|ZP_02211277.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
 gi|164603673|gb|EDQ97138.1| hypothetical protein CLOBAR_00890 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 183/368 (49%), Gaps = 8/368 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++     + + L + G    T +QE  +      KD+L  +QTG+GKT+AF + +  +
Sbjct: 3   FKDLKISDELIDTLKKNGIKTPTPIQEESILHIKNNKDILAQSQTGTGKTLAFLIPIFDS 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +N           L +APTRELA+Q+  E E L     + V    GG  +  +   L
Sbjct: 63  ISPKNQNI------QTLILAPTRELAIQIYNEAEKLNKDKNINVLAAYGGKDIKSQLNKL 116

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    +V+ TPGRL DH+  K +++S L  +VLDEAD+M+ +GF+++IE I+  + KKR+
Sbjct: 117 KRNIQLVIATPGRLLDHLDRKSIDLSKLNTLVLDEADQMILMGFKNEIEAIIKETNKKRQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L FSAT+   +  LA  Y KD V V I S+      I    V      +  A+  +L  
Sbjct: 177 TLCFSATLDSQVKKLAYRYMKDPVEVTIKSKEITLETIKQEVVETTDRHKQEALCKVLDE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AI+FC T+  V    + LA   +    L  ++ Q +R   ++  R    +  IAT
Sbjct: 237 DNPFMAIIFCRTKRRVDALDEALAVKGYNCEKLHSDIPQAKRERIIKSFRKADLQYLIAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+  +  + + ++    E+ +HR GRTGR G  G +   +     +  E++  
Sbjct: 297 DVASRGLDITGITHIYNYDIPETSEDYIHRIGRTGRIGNDGYTCMFVDPKNTKTLEKIES 356

Query: 362 EANVSVVW 369
           +    +  
Sbjct: 357 DIKYEIPR 364


>gi|25141235|ref|NP_036138.1| ATP-dependent RNA helicase DDX3Y [Mus musculus]
 gi|73620958|sp|Q62095|DDX3Y_MOUSE RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName:
           Full=D1Pas1-related sequence 1; AltName: Full=DEAD box
           protein 3, Y-chromosomal; AltName: Full=DEAD-box RNA
           helicase DEAD2; Short=mDEAD2
 gi|3790186|emb|CAA07483.1| DBY protein [Mus musculus]
 gi|18204785|gb|AAH21453.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [Mus musculus]
 gi|148706201|gb|EDL38148.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_b
           [Mus musculus]
          Length = 658

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 189/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 178 IENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 237

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 238 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 297

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG    ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 298 VVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 357

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 358 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L +  +   ++ G+ SQ+
Sbjct: 418 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 538 GLATSFFNERNLNITKDLLDLLVEAKQEVP 567


>gi|19115400|ref|NP_594488.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|1351666|sp|Q09916|HAS1_SCHPO RecName: Full=ATP-dependent RNA helicase has1
 gi|1067204|emb|CAA91949.1| ATP-dependent RNA helicase Has1 (predicted) [Schizosaccharomyces
           pombe]
          Length = 578

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 114/476 (23%), Positives = 216/476 (45%), Gaps = 16/476 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   + I +A+ E G+  +T +Q+  + P L  +DVL +A+TGSGKT+AF +  
Sbjct: 88  IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +F P +    + I+PTRELA+Q+    + L         + IGG +   E 
Sbjct: 148 IEMLY--ALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEA 205

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L  G +++V TPGRL DH++        +L+++V+DEAD +L++GF D++  I+   P
Sbjct: 206 DKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP 265

Query: 178 KKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            + R          T    +  ++       V V+          ++   V+V    R  
Sbjct: 266 SENRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFL 325

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + + L+ +  K  IVF S+ ASV    ++L      V+ L G+  QQ R+N      + 
Sbjct: 326 LLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNA 385

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNM 352
              + + T+VAARG+D+P ++ ++  +   +P + +HR GRT R  +  G S+  +  + 
Sbjct: 386 EKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSE 445

Query: 353 QRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + A VS+     P+ + A  +   ++++    +L     D  +      A +
Sbjct: 446 LGFL-RYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASY 504

Query: 412 DPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
             + I         ++ ++   A      +++ +     + + RA        D +
Sbjct: 505 SLKSIFDINKLDLAKVAKSFGFAHPPNVNITIGASGRTDKKERRAGYNKKNHVDVY 560


>gi|15902714|ref|NP_358264.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116516888|ref|YP_816157.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|168492910|ref|ZP_02717053.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|182683681|ref|YP_001835428.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
           CGSP14]
 gi|221231556|ref|YP_002510708.1| helicase [Streptococcus pneumoniae ATCC 700669]
 gi|303260226|ref|ZP_07346197.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303264099|ref|ZP_07350020.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
 gi|15458257|gb|AAK99474.1| ATP-dependent RNA helicase [Streptococcus pneumoniae R6]
 gi|116077464|gb|ABJ55184.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae D39]
 gi|182629015|gb|ACB89963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           pneumoniae CGSP14]
 gi|183576996|gb|EDT97524.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC3059-06]
 gi|220674016|emb|CAR68529.1| putative helicase [Streptococcus pneumoniae ATCC 700669]
 gi|302638550|gb|EFL69014.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302646504|gb|EFL76730.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS397]
          Length = 447

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|31981163|ref|NP_080136.2| ATP-dependent RNA helicase DDX18 [Mus musculus]
 gi|56404614|sp|Q8K363|DDX18_MOUSE RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18
 gi|20380248|gb|AAH28246.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|75517578|gb|AAI03777.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|148707837|gb|EDL39784.1| mCG1040626 [Mus musculus]
 gi|187954459|gb|AAI41231.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
 gi|187954929|gb|AAI41232.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Mus musculus]
          Length = 660

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 167 TSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 226

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 227 VIELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 284

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 285 VQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 344

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         ++++ + +D      V+     R  
Sbjct: 345 PARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFL 404

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 405 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 464

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 465 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 523

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         V  I+ +  +++++   FL     +  K       
Sbjct: 524 ELGFL-RYLKQSKVPLNQFDFSWSKVSDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 581

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 582 SHSLKQI 588


>gi|125537372|gb|EAY83860.1| hypothetical protein OsI_39082 [Oryza sativa Indica Group]
          Length = 630

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 7/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I   L+ RG   L  +Q A+L P ++ KD++  A+TG+GKT+AFG+ +   ++  N
Sbjct: 105 ISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHN 164

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++ SP   PLA+ +APTRELA QV RE       + V      GG  + ++ R L  G  
Sbjct: 165 EKNSPGKFPLAIVLAPTRELAKQVEREF---SDSSNVETICVYGGTPISQQIRQLNYGVD 221

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V+GTPGR+ D ++   LN+S ++ VVLDEAD+ML +GF +D+E ILD  P KR+ LMFS
Sbjct: 222 VVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFS 281

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NILRYHG 243
           AT+   I  L + Y K+ V +++  E+ Q          +A        V    I  +  
Sbjct: 282 ATMPTWIRRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAK 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               IVF  T+    R +  +        AL G+++Q +R   L+  R+G   + IATDV
Sbjct: 342 GGKCIVFTQTKRDADRLSYTMGRSFQCQ-ALHGDITQAQRERTLKGFREGHFNILIATDV 400

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVIH EL ++ E  +HRSGRTGRAG+KG ++ +      R    +  + 
Sbjct: 401 AARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDV 460

Query: 364 NVSVVWEPAPSVE 376
                  P  +VE
Sbjct: 461 GCKFTELPKINVE 473


>gi|193632062|ref|XP_001950933.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Acyrthosiphon pisum]
          Length = 528

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 170/423 (40%), Gaps = 16/423 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK   ++  V+ E L   GY   T +Q   +   L+++ +   A TGSGKT AF + +  
Sbjct: 55  MKEAYSLSPVLMENLKNSGYTVPTPIQTQAIPVMLQKRQIFACAPTGSGKTAAFLVPIIH 114

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    ++        AL ++PTRELA Q  RE   L    G+             +   
Sbjct: 115 HLNKPLNK-----GFRALIVSPTRELAKQTLRECTRLCEGIGLRAHTFTKINKDKEKFNP 169

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG------LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
                  ++         +  +        NI  L     D+  E    GFRD +  I  
Sbjct: 170 KLAQKFDILIATPNRLVFLLQQEPPAVELNNIEWLIIDESDKLFETGVRGFRDQLAIIYK 229

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDN 233
           +     +  MFSAT +  +   +K      + V + + N   + ++     +     +  
Sbjct: 230 ACGPNAKRAMFSATYTVEVAKWSKKNLDGLIAVTVGNRNTTTTMVEQELVFVGNEEGKLI 289

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+ ++++   +   ++F  ++         L      V A+  + +QQ+R N ++  R+G
Sbjct: 290 AMRDLVKKGLSPPVLIFLQSKERAKELFSELIYDGINVDAIHADRTQQQRDNTVKAFREG 349

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V I T++  RGID   + LV++ +  S+  + +HR GRTGRAGR G +V     + +
Sbjct: 350 KIWVLICTELMGRGIDFKGVNLVVNYDFPSSAISYIHRIGRTGRAGRSGKAVTFFTNDDK 409

Query: 354 RRAERL---FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                +    R++   V       ++ + +   +++ +  +  + I+    +        
Sbjct: 410 PMLRSIATVMRDSGCPVPDYML-EMKRLHKNTRRKLEKQSIDRNEIRAKPHRYHKPNADI 468

Query: 411 HDP 413
            DP
Sbjct: 469 KDP 471


>gi|156099810|ref|XP_001615701.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|5679692|emb|CAB51741.1| RNA helicase-1 [Plasmodium cynomolgi]
 gi|148804575|gb|EDL45974.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 398

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 187/376 (49%), Gaps = 9/376 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + +   +   G+   +++Q+  + P L   D +  AQ+G+GKT  F ++ 
Sbjct: 22  VDTFDALGLNEKLLRGIYSYGFEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISS 81

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +        A  AL +APTRELA Q+ + +  L     V    C+GG  V  + 
Sbjct: 82  LQLINYD------YVACQALILAPTRELAQQIQKVVLALGDYLKVKCHACVGGTVVREDI 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G H+VVGTPGR+ D I  + L +  LK  +LDEADEML  GF+  I  +      
Sbjct: 136 DKLKQGVHMVVGTPGRVYDMIDKRHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVP 195

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++ +FSAT+   I  L   + +D   + +  +      I    V +     + + + +
Sbjct: 196 DIQVALFSATMPQEILELTTRFMRDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCD 255

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +I++C+TR  V   T+ +   LF V  + G++ Q++R   ++  R G  RV
Sbjct: 256 LYETLTITQSIIYCNTRKKVDILTQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRV 315

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+ ARGID+  + LVI+ +L  +P+  +HR GR+GR GRKG+++  +  + + + +
Sbjct: 316 LVTTDLLARGIDVQQVSLVINYDLPCSPDTYIHRIGRSGRFGRKGVAINFVTNDDKEKDK 375

Query: 358 RLFREANVSVVWEPAP 373
               E+  S   E  P
Sbjct: 376 LKKIESYYSTQIEEMP 391


>gi|268593262|ref|ZP_06127483.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
 gi|291311158|gb|EFE51611.1| ATP-dependent RNA helicase SrmB [Providencia rettgeri DSM 1131]
          Length = 445

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 192/387 (49%), Gaps = 4/387 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +ALS++GY   T++Q A +   +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDESLIDALSDKGYQRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + + L A   + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLVVTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +    A     +   + ++L+   
Sbjct: 188 SATLEGEAIRDFAERLLEDPIEIDADPSRRERKKIQQFHYRADTLEHKTALLCHLLKQDE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF   R  +    + L E   +   L GE+ Q +R+ A++ + DG+ +V +ATDV
Sbjct: 248 VTKAIVFVRKRERLRELVQWLREAGIEPCYLEGEMPQAKRNEAVRRLVDGQVKVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V + +L    +  LHR GRTGRAGRKG ++ ++  +      ++ R  
Sbjct: 308 ASRGLDIENVSHVFNFDLPRTADVYLHRIGRTGRAGRKGTAISLVEAHDFPLLGKITRYI 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
              +      S+    +  ++ +L  P
Sbjct: 368 EEPIKIRVVDSLRPTTKAPSEAMLNKP 394


>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 399

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 122/391 (31%), Positives = 195/391 (49%), Gaps = 6/391 (1%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+     + I + ++ +GY   T +Q+  +   +   D+L  AQTG+GKT AF L +
Sbjct: 1   MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +     N     A +  +L + PTRELA Q+ + ++      G+   V  GGV    + 
Sbjct: 61  INK-FGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  I+V TPGRL D I    +N   L+  VLDEAD MLD+GF  D++ I+   PK
Sbjct: 120 DSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+   I  LA+    D  ++ I +E      ++     +  S++   + NI
Sbjct: 180 SRQTLLFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNI 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +  ++FC T+       K L +      +L    +Q  R  ALQ  +D   RV 
Sbjct: 240 LTKADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ ++ LVI+  L  +P N +HR GRT RAG+ GM++    +N  R+   
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           +       +   P  + +   +  ++  +QD
Sbjct: 360 IENSIGQVI---PVVTEQPFHKEFSKAPIQD 387


>gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans]
          Length = 811

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 125/500 (25%), Positives = 209/500 (41%), Gaps = 40/500 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   ++ KDV+  A+TGSGKT AF + +   LL  
Sbjct: 286 SLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLY- 344

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R             PTRELAVQ       L + T +  A+  GG S   +   L+   
Sbjct: 345 --RPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAVLKTRP 402

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+       + HL+ +VLDEAD ML+ GF   +  IL + PK R+ ++
Sbjct: 403 DVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKSRQTML 462

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + ++      +    + +       R   ++ I   
Sbjct: 463 FSATMTSTVDRLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAYLMYICEK 522

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   V A    +   L G +SQ++R  A++  R G++   +AT
Sbjct: 523 FYNERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSAYLLAT 582

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+ ++  VI+ E     +  +HR GRT RAGR+G +  +  +  ++  ++  +
Sbjct: 583 DVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVK 642

Query: 362 EA---NVSVVWEPAPSVE----------------------------AIRERDAQRILQDP 390
            A      VV    P  E                            +I ERD +R     
Sbjct: 643 AARDQGAKVVQRQVPVEETDRWMTKLRGLEEEIEEVLQEEKDERLLSITERDLKRGENLI 702

Query: 391 LFLDSIQGD-EKKMVDVLLAKH-DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           L  D I+    +   +    K  + EK AA         +   ++   +S    +     
Sbjct: 703 LHEDEIKARPRRVWFESEKEKIAEREKGAAALNGPAGGSVKDKKKGKKLSGKDKKKLEAR 762

Query: 449 DSRAFKVGGGSRDNFKGSSW 468
           D R            +G S 
Sbjct: 763 DFRTEGKQWKKGKQDRGLST 782


>gi|310756760|gb|ADP20521.1| ATP-dependent RNA helicase DDX3X [Fukomys anselli]
          Length = 662

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 115/390 (29%), Positives = 192/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLFHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++         N+ +    L  EA   V 
Sbjct: 539 GLATSFFNDRNGNITKDLLDLLVEAKQEVP 568


>gi|297846156|ref|XP_002890959.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336801|gb|EFH67218.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 539

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 120/397 (30%), Positives = 199/397 (50%), Gaps = 15/397 (3%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   N+P+ + +      +   + +Q       L  +D++  A+TGSGKT+AFG+  
Sbjct: 117 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 174

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +L +N +    S    P  L ++PTRELAVQ+   L       G+      GG S  
Sbjct: 175 IMHVLKKNKKLGGGSKNVNPTCLVLSPTRELAVQISDVLSEAGEPCGLKSICVYGGSSKR 234

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   +++G  IV+GTPGRL D I    L +S +  VVLDEAD MLD+GF + + FIL  
Sbjct: 235 PQINAIRSGVDIVIGTPGRLRDLIESNELRLSDVSFVVLDEADRMLDMGFEEPVRFILSK 294

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + K R+M+MFSAT    +  LA+ +        +       ++ D   ++  L +R    
Sbjct: 295 TNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVVIGSVDLAANHDVMQIIEVLDERARDQ 354

Query: 236 -----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +           +VF   +    R  + L +  ++ V++ G  +Q ER+ +L + 
Sbjct: 355 RLVALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLF 414

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++G   + +ATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q
Sbjct: 415 KEGSCPLLVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQ 474

Query: 351 NMQRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
             +  A  L    REA   V  +       +++++++
Sbjct: 475 QNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESK 511


>gi|297303643|ref|XP_001095294.2| PREDICTED: ATP-dependent RNA helicase DDX3X [Macaca mulatta]
          Length = 738

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 276 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 335

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 336 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 395

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 396 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 455

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 456 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 515

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 516 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 575

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 576 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 635

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 636 GLATSFFNERNINITKDLLDLLVEAKQEVP 665


>gi|260774211|ref|ZP_05883126.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260611172|gb|EEX36376.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 442

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 6/380 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E  +   + + L+   +   T +Q   +   +  KD+L S++TGSGKT+AF L + 
Sbjct: 1   MQFKELGLDNRLLKTLAHYDFKQATDIQRQAIPVAMAGKDLLASSKTGSGKTLAFLLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              L    +   A  P  + + PTRELA QV  EL    A       +  GG + + +  
Sbjct: 61  HKAL--KTKALSARDPRGVILVPTRELAKQVYSELRSALAGLSYTATLITGGENFNDQVN 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SS 176
            L+ G   +V TPGRL DH+  + L +  L  ++LDEAD MLDLGF   +  I +     
Sbjct: 119 ALRRGPKFIVATPGRLADHLEHRSLFLQGLDTLILDEADRMLDLGFAPQLRHIHNAAKHR 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   +   T   +  ++           +         +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHAEMNTIAHEMLKEPKRIAIGLGNEQHKDIRQRFYLCDHLDHKEALLD 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL     +  I+F +TRA   R T  L E   +VVALSG L+Q +R+  +        +
Sbjct: 239 RILNDAEYRQVIIFTATRADTERLTNKLNEQNLKVVALSGSLTQTQRNTIMSQFERAVFK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TD+A+RG+D+ ++  VI+ ++  + E  +HR GRTGRAG +G ++ ++        
Sbjct: 299 ILVTTDIASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNQGDAISLVGPKDWDSF 358

Query: 357 ERLFREANVSVVWEPAPSVE 376
           +R+       + +E    ++
Sbjct: 359 KRVEAFLQQDIQFEVLEGLQ 378


>gi|237510128|ref|ZP_04522843.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
 gi|235002333|gb|EEP51757.1| dead/deah box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Burkholderia pseudomallei
           MSHR346]
          Length = 465

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 195/372 (52%), Gaps = 8/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + L++GA
Sbjct: 72  ---ARRFDVQALVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+F
Sbjct: 129 HIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ + +   +V +   +        R   V   +R +A+  +L ++   
Sbjct: 189 SATYPDGIAKLSQQFLRHPKKVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F V+AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAR 367

Query: 366 SVVWEPAPSVEA 377
            V W P   ++A
Sbjct: 368 EVEWHPLAELKA 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|206576701|ref|YP_002238858.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
 gi|206565759|gb|ACI07535.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae 342]
          Length = 457

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEIDTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 HLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G +   IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|271969585|ref|YP_003343781.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
 gi|270512760|gb|ACZ91038.1| hypothetical protein Sros_8393 [Streptosporangium roseum DSM 43021]
          Length = 697

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 183/364 (50%), Gaps = 8/364 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++     I +AL   G +    +QE  L   L  +D++  A+TG+GKT AFG+A+
Sbjct: 38  LTTFRDLGVTPEIADALETEGIITPFPIQEMALPLALNGQDIIGQARTGTGKTYAFGVAM 97

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +            P  L + PTRELAVQV  +L     K G  +    GG +   + 
Sbjct: 98  LQRV---GKPRKNRKKPRGLVVVPTRELAVQVTEDLVTAAGKLGSRILTVYGGRAYEPQV 154

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  ++VGTPGRL D ++ K L++  +  +VLDEAD MLDLGF  DIE I+   P+
Sbjct: 155 EALKQGVDVIVGTPGRLLDLVKQKHLDLGQIDVLVLDEADRMLDLGFLPDIERIIKLIPE 214

Query: 179 KRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           KR+ ++FSAT+   I   +             N  +E                 D+   +
Sbjct: 215 KRQTMLFSATLPGEIVALSRRYLTRPTHVRAENNDAEAEATPQTTQFVWRAHRMDKIEIV 274

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L+  G    ++FC T+ +     + L E  F   A+ G+L Q +R  AL+  R+G+ 
Sbjct: 275 GRLLQCDGRGLTMIFCETKRACDMVVEQLKERGFAAAAVHGDLGQGQREQALRAFRNGKI 334

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARGID+ D+  V++ +   + +  +HR GRTGRAG+ G++V  +      R
Sbjct: 335 DVLVATDVAARGIDVDDVTHVVNYDCPQDEKAYVHRIGRTGRAGKTGVAVTFVEWEDLTR 394

Query: 356 AERL 359
            + +
Sbjct: 395 WKVI 398


>gi|326505994|dbj|BAJ91236.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 685

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 188/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++I    +I   ++   Y   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 199 INTFDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPI 258

Query: 59  ASTLLAENDRF--------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +  +            S    PL L +APTRELA Q+  E +    ++ V   V  G
Sbjct: 259 LNQIYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYG 318

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  V  + RDL+ G H++V TPGRL D +    + +   + +VLDEAD MLD+GF   I 
Sbjct: 319 GSHVMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIR 378

Query: 171 FILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I++             MFSAT    I  LA+++  + + + I        +I  + V V
Sbjct: 379 RIVEKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWV 438

Query: 227 ALSDRDNAIV------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              ++ + ++       I         +VF  T+       + L  + + V ++ G+ +Q
Sbjct: 439 EDRNKRSYLLDLLNATPIRSQPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQ 498

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER +AL+  R G   V +AT VAARG+D+P +  VI+ +L S+ E  +HR GRTGR G 
Sbjct: 499 REREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGN 558

Query: 341 KGMSVFVI---PQNMQRRAERLFREANVSVV 368
            G++        +N+ R    L  E+   + 
Sbjct: 559 LGLATSFFNDKNRNLTRDLMELITESKQELP 589


>gi|295672658|ref|XP_002796875.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226282247|gb|EEH37813.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 683

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 197 ITAFTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 256

Query: 59  AST-LLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S  L                    P AL + PTREL  Q+  E      +T +   V  
Sbjct: 257 LSKSLEKRGPEGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 316

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    +++SH++ +VLDEAD MLD+GF   I
Sbjct: 317 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQI 376

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I           R+ LMFSAT  P I  LA+ + KD + +++        +I  R + 
Sbjct: 377 RRIVQGSDMPDKHFRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIE 436

Query: 226 VA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 437 CDSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 496

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 497 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLS 556

Query: 345 VFVIPQNMQRRAER----LFREANVSVV 368
                ++   +  R    L ++AN  V 
Sbjct: 557 TAFFSRSKNFKIARSMVDLLKDANQEVP 584


>gi|212635941|ref|YP_002312466.1| DEAD box family ATP-dependent RNA helicase [Shewanella
           piezotolerans WP3]
 gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
           piezotolerans WP3]
          Length = 447

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 6/380 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + + L   G    T +QE  +   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQTLKHMGIDTPTEIQEQAIPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + +      P A+ + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRMI--SCKALSKRDPRAVILLPTRELATQVYSQLRLLVANTQFKATKILGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H VV TPGRL DH++   L+++ L+ ++ DEAD MLDLGF + ++ I +++  K
Sbjct: 119 ALARDPHFVVATPGRLADHLKQHHLHLNGLELLIFDEADRMLDLGFAEQLKQINNAADHK 178

Query: 180 RR---MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR   M   +          A+  +        A             +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHGDVDEIAAELLKTPEHVAIGAGNLEHKDITQRIFLCDHLDHKEALLS 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+    K  I+F +TR    R  K LA+  F+  +LSGEL Q  R+  +     G  +
Sbjct: 239 RILKDEQQKQIIIFTATRQDTDRLAKKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG +V ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLVGPKDWVNF 358

Query: 357 ERLFREANVSVVWEPAPSVE 376
            ++    N    +     ++
Sbjct: 359 TQVQTFLNKQFAFSELEGLK 378


>gi|156044094|ref|XP_001588603.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980]
 gi|154694539|gb|EDN94277.1| hypothetical protein SS1G_10150 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 573

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/471 (24%), Positives = 211/471 (44%), Gaps = 15/471 (3%)

Query: 6   NIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+     +AL+E   +  +T +Q   + P L  +DVL +A+TGSGKT++F +     L  
Sbjct: 102 NLSDKTMKALTEDMKFDTMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEML-- 159

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            + RF P +    + ++PTRELA+Q+      L A       + +GG +   E   L  G
Sbjct: 160 HSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVMGGANRRAEAEKLVKG 219

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            ++++ TPGRL DH++        +LKA+V+DEAD +L+ GF D+++ I+   PK  R  
Sbjct: 220 VNLLIATPGRLLDHLQNTQGFIFKNLKALVIDEADRILEAGFEDEMKQIVKVLPKDDRQT 279

Query: 184 MFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           M  +            ++       + V+   E+     ++   V+     R   + + L
Sbjct: 280 MLFSATQTTKVEDLARISLRPGPLYINVDNKKEHSTVEGLEQGYVVCDSDKRFLLLFSFL 339

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  IVF S+ A V    ++L      V+ L G+  QQ+R+N      + +    I
Sbjct: 340 KRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLI 399

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRRAER 358
            TDVAARG+D+PD++ VI  +   +P + +HR GRT R    KG S+  +  +       
Sbjct: 400 CTDVAARGLDIPDVDWVIQFDPPDDPTDYIHRVGRTARGNDGKGRSLLFLQPSEVGFLTH 459

Query: 359 LFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI- 416
           L + A + VV    P+ + +  +    +++    +L+    +  K      A H    + 
Sbjct: 460 L-KTARIPVVEFEFPAAKIVNIQSQLSKLIAQNYYLNKSAKEGYKSYLQAYASHSLRSVF 518

Query: 417 ---AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                  +++ ++          +++ +G        R +         +K
Sbjct: 519 DVGKLDLVKVAKSFGFDAPPRVDINISAGMKDTAPKKRPYGSQPRQGGTYK 569


>gi|320582556|gb|EFW96773.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 568

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/413 (26%), Positives = 202/413 (48%), Gaps = 10/413 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   + + + G+  +T VQ   + P L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 118 HLSEPTMKGIQDMGFTKMTEVQARTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLY-- 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +   A+ I PTRELA+Q+      L A     + + IGG +  +E   L  G 
Sbjct: 176 SLKFKPRNGAGAIVITPTRELALQIFGVARELMAHHSQTLGILIGGANRRQEAEKLAKGV 235

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LK +++DEAD +L++GF D+++ I+   P ++R  M
Sbjct: 236 NLIIATPGRLLDHLQNTKGFIFKNLKTLIIDEADRILEIGFEDEMKQIVKILPNEKRQSM 295

Query: 185 FSATISPAITTL----AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +             + N     + V+   E      ++   V+     R   + + L+
Sbjct: 296 LFSATQTTKVEDLARVSLNKAPLYINVHQDRETSTADGLEQGYVVCDSDKRFLLLFSFLK 355

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V  ++++L      V+ L G+  QQ+R+N      + +  + I 
Sbjct: 356 RNLKKKVIVFLSSCNCVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGILIC 415

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P+++ +I  +   +P + +HR GRT R  + KG S+  +  +      R 
Sbjct: 416 TDVAARGLDIPEVDWIIQFDPPDDPRDYIHRVGRTARGSKGKGKSLMFLTPSELGFL-RY 474

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + A V +     P+ + A  +   ++++++  +L     D  +      A H
Sbjct: 475 LKAAKVPLNEYEFPANKIANVQSQLEQLVKNNYWLHQSAKDGYRAYLQAYASH 527


>gi|294631256|ref|ZP_06709816.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
 gi|292834589|gb|EFF92938.1| ATP-dependent RNA helicase DeaD [Streptomyces sp. e14]
          Length = 960

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 127/375 (33%), Positives = 184/375 (49%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G      +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 67  LPET-AEALEAVGITTPFPIQEMTLPVALTGTDVIGQAKTGTGKTLGFGLPLLERVTVPA 125

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 126 DVEAGRAKPEALTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVVAIYGGRAYEPQVE 185

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+NG  +VVGTPGRL D    K LN+ H+KA+VLDEADEMLDLGF  D+E I+   P K
Sbjct: 186 ALKNGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIIGMLPAK 245

Query: 180 RRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+      +     +            E    ++           D+   + 
Sbjct: 246 RQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFIYRAHNMDKPEMVA 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A++FC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 306 RILQAEGRGLAMIFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 365

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++  +   R 
Sbjct: 366 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 425

Query: 357 ERLFREANVSVVWEP 371
           + + +  ++     P
Sbjct: 426 QLINKALDLGFSDPP 440


>gi|195494738|ref|XP_002094967.1| GE22119 [Drosophila yakuba]
 gi|194181068|gb|EDW94679.1| GE22119 [Drosophila yakuba]
          Length = 594

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 90/426 (21%), Positives = 164/426 (38%), Gaps = 19/426 (4%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K F+ +P+ + + L  R +   T +Q   L   L+ + ++  A TGSGKT+AF   + + 
Sbjct: 123 KDFKMLPR-LQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIING 181

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +    S   +L +APTRELA Q+ RE   L  +TG+            ++    
Sbjct: 182 L-----KVHKTSGLRSLVLAPTRELAQQIYRECAELTRQTGLSTHFISKVSEAKQKHGAE 236

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               + ++ +       +  +   +  L  V     DE   L       F          
Sbjct: 237 CKQRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAA 296

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDN 233
               +  ++    T      K A+R              +   +       + +   +  
Sbjct: 297 CSHPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLV 356

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+ +++R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G
Sbjct: 357 AMRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREG 416

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM- 352
              V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q   
Sbjct: 417 SIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDT 476

Query: 353 --QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
              R    + + +  SV       ++ +R+ +A+   + PL  + I    +        K
Sbjct: 477 SNLRSIALIIKNSGGSVPEYML-QMKKVRKSEAKMRAKKPLDREDISTKIRPETKSN-EK 534

Query: 411 HDPEKI 416
           H   K+
Sbjct: 535 HKSAKL 540


>gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera]
          Length = 786

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 150/618 (24%), Positives = 255/618 (41%), Gaps = 88/618 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E+L +RG  +L  +Q A+L P L  +D++  A+TG+GKT+AFG+ +   L  ++
Sbjct: 123 LPPRLVESLEQRGITHLFPIQRAVLVPALEGRDLIARAKTGTGKTLAFGIPIIKRLSEDD 182

Query: 67  DRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           ++ +        P  L +APTRELA QV +E++        V           +    L 
Sbjct: 183 EKRTSQRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYITQQ--NALS 240

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGR+ D I+G  L +  ++ +VLDEAD+ML +GF +D+E IL+  P +R+ 
Sbjct: 241 RGVDVVVGTPGRIIDLIKGNSLKLGEVQNLVLDEADQMLAVGFEEDVEVILEKLPSERQS 300

Query: 183 LMFSATISPAITT---------------LAKNYQKDAVRVNIASENRQHSDIDYRAVL-- 225
           ++FSAT+   +                     +    +              D+   L  
Sbjct: 301 MLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLNLEPPKNPPQTLDHVGDHDEKLAE 360

Query: 226 ------------------------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
                                     + DR         Y      IVF  T+   +   
Sbjct: 361 GIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGHKVYAKGGKTIVFTQTKR-DADEV 419

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL------ 315
            +   +     AL G++SQ +R   L   R G+  V +ATDVAARG+D+P+++L      
Sbjct: 420 SMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLKYVDLL 479

Query: 316 ---VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
              +IH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  + L R+      +   
Sbjct: 480 FLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISP 539

Query: 373 PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPE 432
           P++E + E  A++++     L+ +  +  +       K   EK                 
Sbjct: 540 PAIEEVLESSAEQVV---ATLNGVHPESVEFFTPTAQKLIEEK----------GTGALAA 586

Query: 433 EITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491
            +  +S  S    FR   S              G S   LS        AR +   L   
Sbjct: 587 ALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLS--------ARSVTGFLSDV 638

Query: 492 SGINRQSIGAIRVQPDL----TFVEVSADGV-DLLRRTV----KLDKGIQLKYLGGEKPD 542
                  +G I +  D        ++  +   +LL + +     + K  +L  L  + P 
Sbjct: 639 YPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGPA 698

Query: 543 FRGYKSSGFKSKNSQDGA 560
              Y     + ++S+ G+
Sbjct: 699 GDYYGRFSNRDRSSRGGS 716


>gi|297621628|ref|YP_003709765.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
 gi|297376929|gb|ADI38759.1| putative ATP-dependent RNA helicase DBP2 [Waddlia chondrophila WSU
           86-1044]
          Length = 395

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 200/390 (51%), Gaps = 6/390 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I E+L E  Y+  + +Q   +   L ++DV+  AQTGSGKT A  + L   +   
Sbjct: 12  NLDPKIIESLREMKYLEPSEIQTKAIPEILNKRDVVALAQTGSGKTAACAIPLCHMVDTS 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D      A  AL I PTRELA+Q   E + +  K GV      GG     +   + +  
Sbjct: 72  KD------AIQALVIVPTRELALQYATETQKIGKKRGVHAFAIYGGEDADIQEAKIGHRV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+++ TPGRL D I  + +++S +  + LDEADEML +GF +D+EFI++   ++ ++L+F
Sbjct: 126 HVLIATPGRLIDFIYSRRIDLSQVFILALDEADEMLSMGFYEDLEFIINCLVQEHQILLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  +A+ + KD V + +  + +  S I++R +      RD +++ +L      
Sbjct: 186 SATMPKEIRRIAEGHMKDPVDILLTQKKQGPSSIEHRFLYCRPDQRDASLIQLLNECQPV 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            +I+F  TR  V    K L + +  V  L G LSQ  R    +  R G+ +  +ATDVAA
Sbjct: 246 QSIIFGRTRFQVESLAKSLQKSVKGVDFLHGALSQDVRRIVTRKFRGGKIQHLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D  ++  V   E+S +P+  +HRSGRTGR  ++GM V ++ +       ++ +    
Sbjct: 306 RGLDFSEVSHVFMYEMSDDPDIYVHRSGRTGRFDKQGMVVTLVTKRDLGVLGKVLKFLKK 365

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
              W   P  E + E   +   +     DS
Sbjct: 366 KPQWIGHPPPERVPESKPRNRKRVRAKKDS 395


>gi|194205947|ref|XP_001917975.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Equus caballus]
          Length = 785

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 141/586 (24%), Positives = 238/586 (40%), Gaps = 45/586 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 190 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 250 LQRELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITKKLA--VACFYGGTPYGGQIERM 307

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAMTVEHLAIKCHWTQRAA 427

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +     +  I+FC T+      ++ ++  L       G++ Q++R   L+  R
Sbjct: 428 VIGDVIRVYSGYQRRTIIFCETKKEAQELSQSVSIKLDAQSLH-GDIPQKQREITLKGFR 486

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 546

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 547 EEHQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 603

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F                       S+
Sbjct: 604 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF----------------VTMILRCSI 647

Query: 472 SVGSKQKAEARWLMPMLCRSSG--INRQSIGAIRVQPDLTF-VEVSADGVDLLRRTVKLD 528
                      W    L    G  I+ +  G + ++       +V       ++      
Sbjct: 648 E---MHNISYAW--KELKEQLGEDIDSKVKGMVFLKGKQGVCFDVPTAAAADVQEKWHDS 702

Query: 529 KGIQLKYLGGEKPDFRGYK--SSGFKSKNSQDGATKRFKRFKGASK 572
           +  QL     E+P+  G +  S GF+ +       +  +     S+
Sbjct: 703 RRWQLSVAT-EQPELEGPREGSRGFRGQRDGSRGFRGRREGNRGSR 747


>gi|168009407|ref|XP_001757397.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691520|gb|EDQ77882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 482

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/390 (31%), Positives = 192/390 (49%), Gaps = 12/390 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E +P  + +     G+   + +Q       L  +D++  A TGSGKT+AFG+     +L 
Sbjct: 68  EGVPPTVLQCCQ--GFEKPSPIQGHAWPFLLAGRDLIGIAATGSGKTLAFGIPAMKHVLD 125

Query: 65  ENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +  +     A P+ L +APTRELA Q+   LE   +  GV V    GG     +R  L+ 
Sbjct: 126 KITKTKGKKAAPVCLVLAPTRELAQQIADVLEESGSACGVGVVCVYGGTPKGPQRSALKA 185

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VV TPGRL D +     ++  +  VVLDEAD MLDLGF   I  IL +  + R+ +
Sbjct: 186 GARVVVATPGRLQDLMEEGVCSLDQVTYVVLDEADRMLDLGFEPAIRAILSTCCQVRQTV 245

Query: 184 MFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVN 237
           MFSAT   A++       N +     +  + +   + D+     ++    RD     ++ 
Sbjct: 246 MFSATWPMAVSKLAMEFMNEKDPVKVMVGSQDLAANHDVTQIVEVIEDRARDARLETLLQ 305

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF   +    R    L    ++V A+ G+  Q +R+ A+   +DG   +
Sbjct: 306 KYHKSRTNRVLVFVLYKKEAVRVETALQRRGWKVSAVHGDKGQSDRTRAVNSFKDGTRPL 365

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+PD+E VI+       E+ +HR GRTGRAG+KG+S     Q  + RA 
Sbjct: 366 LIATDVAARGLDIPDVEYVINYSFPLTTEDYVHRIGRTGRAGKKGLSHTFFTQADRARAG 425

Query: 358 RL---FREANVSVVWEPAPSVEAIRERDAQ 384
            L    REA  +V  E       +++++++
Sbjct: 426 ELVNVLREAGQTVPEELLKFGTHVKKKESK 455


>gi|324991997|gb|EGC23919.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK405]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  ++  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFLEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|168180351|ref|ZP_02615015.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|168185059|ref|ZP_02619723.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226949022|ref|YP_002804113.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum A2 str. Kyoto]
 gi|237795189|ref|YP_002862741.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           botulinum Ba4 str. 657]
 gi|182668710|gb|EDT80688.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum NCTC 2916]
 gi|182671890|gb|EDT83851.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Bf]
 gi|226842744|gb|ACO85410.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum A2 str. Kyoto]
 gi|229262468|gb|ACQ53501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           botulinum Ba4 str. 657]
          Length = 421

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 198/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L +      T +Q   +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPIFEKITTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  KD+  V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G+++ +I +  +    +  +E 
Sbjct: 303 SARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|146161201|ref|XP_976799.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146830|gb|EAR86204.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 668

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 182/461 (39%), Gaps = 18/461 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M+      Q I + + + GY   T +Q   +   + ++++L  A TGSGKT A+ L L  
Sbjct: 210 MQKKYGFNQKILDNMKKAGYEKPTPIQMQSVPIIMEKRNLLALAPTGSGKTAAYCLPLLQ 269

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            L          +   AL  AP+ ELA Q+ RE E+     + G+ +       +     
Sbjct: 270 KLGTHQ-----KNGVRALIFAPSNELAEQILREFEFLNYGVEDGLRIKQIQKINNESNAF 324

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +       I++ TP +     R        L+ +V DEAD   +      ++ IL++  +
Sbjct: 325 KIQLEHIDILITTPLKFIKMNRKSHTEFDKLEYIVFDEADRYFEFNIAGQMKRILETFQE 384

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K+ +    FSATI   +  L KN   D +++ I  +N   + I+               +
Sbjct: 385 KQGLTYLLFSATIQHPVEELVKNIIVDPLKLQIGGKNNVLASIEQSLSYCQSEYGKLVEL 444

Query: 237 NILRYH--GAKNAIVFCSTRASVS----RFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +  +       ++F  ++                   ++  +  +  ++ER   ++  
Sbjct: 445 KNIINNGEFNPPVLIFVQSKERGEELLSMIKSSCVNTPIKIEKIDSDKQKEEREEVIEDF 504

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+    I TD+ ARGID   + LVI+ +  +   N +HR GRTGRAGR G ++     
Sbjct: 505 RTGKLWALICTDLMARGIDFKGVNLVINYDFPTTMINYIHRVGRTGRAGRTGRAITFFTN 564

Query: 351 NMQRRAERLFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
             +     L     VS    P     ++   ++  +R+ + P+  D+I  D  K  +  L
Sbjct: 565 EDKPLLRSLGNMLKVSGCDVPEWIFKLQKADKKTLKRLEKFPVKRDAISLDPSKQKEKDL 624

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
                 +IA G     R      EE        G++   D 
Sbjct: 625 EFEKQIRIADG-QYFSRKKKIDREERRKQQQNQGKENEDDG 664


>gi|73965239|ref|XP_861886.1| PREDICTED: similar to Probable RNA-dependent helicase p68 (DEAD-box
           protein p68) (DEAD-box protein 5) isoform 14 [Canis
           familiaris]
          Length = 588

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 177/379 (46%), Gaps = 34/379 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  + + ++ + +   T++Q       L   D++  AQTGSGKT+++ L     +  +
Sbjct: 100 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQ 159

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L +APTRELA QV +                                 
Sbjct: 160 -PFLERGDGPICLVLAPTRELAQQVQQVAAEY--------------------------CV 192

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+ LM+
Sbjct: 193 EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMW 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT    +  LA+++ KD + +NI +     + +I     +    ++D  ++ ++    +
Sbjct: 253 SATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMS 312

Query: 245 KN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     IVF  T+      T+ +    +  + + G+ SQQER   L   + G+A + IAT
Sbjct: 313 EKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIAT 372

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVA+RG+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++   L  
Sbjct: 373 DVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLIS 432

Query: 360 -FREANVSVVWEPAPSVEA 377
             REAN ++  +    VE 
Sbjct: 433 VLREANQAINPKLLQLVED 451


>gi|327282752|ref|XP_003226106.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Anolis
           carolinensis]
          Length = 697

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/398 (28%), Positives = 175/398 (43%), Gaps = 9/398 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F++    I   + + G++  T +Q       L+  D++  AQTG+GKT+A+ +     L 
Sbjct: 296 FKHYSD-IMANIRKNGFLKPTPIQAQAWPIILQGYDLIGIAQTGTGKTLAYLMPGFIHLD 354

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +         P  L + PTRELA+QV  E    Y+  G+      GG     +   +  
Sbjct: 355 LQPIPREKRGGPGMLVLIPTRELALQVEAECSK-YSYKGIKSICIYGGGDRRGQINVVSK 413

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D      +N+  +  +VLDEAD MLD+GF   I  IL      R+ +
Sbjct: 414 GVDIVIATPGRLNDLQMNNFINLRSITYLVLDEADRMLDMGFEPQIMKILLDIRPDRQTV 473

Query: 184 MFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           M SAT    +     +       V V        ++      V+     R      I   
Sbjct: 474 MTSATWPDGVRRLAKSYLKDPMIVYVGTLDLAAVNTVEQRVVVIPEEEKRAFTRFFIDSM 533

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F   + +    +   +     V +L     Q +R  AL+  R GR RV +AT
Sbjct: 534 KSEDKVIIFVGKKLTADDLSSDFSLQGIPVQSLHSNREQCDREQALEDFRQGRVRVLVAT 593

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G +V ++ +N  R A  L  
Sbjct: 594 DLASRGLDVQDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGEAVTLVTRNDWRVASELIE 653

Query: 362 --EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             E    VV E   S   + ER  Q  L+  +  D ++
Sbjct: 654 ILERGNQVVPEELIS---MAERYKQFQLKKEMERDLVK 688


>gi|312066551|ref|XP_003136324.1| RNA helicase [Loa loa]
 gi|307768519|gb|EFO27753.1| RNA helicase [Loa loa]
          Length = 952

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L +  Y   T +Q   +   +  +DV+  A+TGSGKT+AF L +   +L +     
Sbjct: 303 ILSTLKKLEYKKPTPIQSQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELE 361

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ ++PTRELA+Q  +E      +  + VA   GGV +  +  DL+ GA +VV 
Sbjct: 362 EMDGPIAVIMSPTRELAMQTWKEANKFAKQLDIRVACVYGGVGISDQIGDLKRGAEVVVC 421

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           T GRL D     +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSA
Sbjct: 422 TVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSA 481

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T    +  LA+      + + +  ++    D++   V++    +   ++ +   Y    N
Sbjct: 482 TFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGN 541

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +         L    +    L G + Q +R + +   + G+ ++ +AT VAAR
Sbjct: 542 VLVFVDKQEKADDLVTQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAAR 601

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANV 365
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I P   +R A  + R A  
Sbjct: 602 GLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQERMAGEVCR-AFE 660

Query: 366 SVVWEPAPSVEAIRE 380
           +   EP   ++ + E
Sbjct: 661 TAGKEPPEQLKKMWE 675


>gi|322514183|ref|ZP_08067247.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
 gi|322119937|gb|EFX91940.1| ATP-dependent RNA helicase RhlB [Actinobacillus ureae ATCC 25976]
          Length = 407

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 192/386 (49%), Gaps = 12/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +  AL  +G+   T +Q   L   L   D+   AQTG+GKT+AF +A    LL  N
Sbjct: 15  IHENVIAALDSKGFEFCTPIQAKTLPITLAGNDIAGQAQTGTGKTMAFLVATFHHLLT-N 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +    P AL +APTRELAVQ+  + E L   + + +A+  GG    ++ + ++ G  
Sbjct: 74  DIQTANKQPRALILAPTRELAVQIASDAELLVKHSDLKLALAYGGDGYEKQLQAIEQGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS--PKKRRMLM 184
           I+VGT GR+ D+++   +N+  ++ VVLDEAD M DLGF   I +++     P +R  ++
Sbjct: 134 ILVGTTGRVIDYVKQGVINLDKVQVVVLDEADRMFDLGFIKGIRYLMRKCSKPDQRLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  LA     +A  + I    R    I       +  D+   ++ +L     
Sbjct: 194 FSATLSPRVRELAYEDMNNAQYIEIEPLQRTGHRIKEELFYPSNEDKMALLLTLLEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+         L     +   L+G+++Q++R   L     G+  + +ATDVA
Sbjct: 254 ERCMIFANTKHKCEEIWSYLVADGHRAGLLTGDIAQKKRLALLDSFTKGQLDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +P++  V + +L  + E+ +HR GRTGRAG  G S+    +        +     
Sbjct: 314 ARGLHIPEVTHVFNYDLPDDREDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIG 373

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDP 390
                 P P    + + DA  +L  P
Sbjct: 374 -----HPIP----VSQYDASALLALP 390


>gi|219971722|gb|ACL68521.1| vasa-like protein [Pleurodeles waltl]
          Length = 727

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/381 (28%), Positives = 183/381 (48%), Gaps = 30/381 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+P+ +   +S+ GYV LT VQ+  +   L ++D++  AQTGSGKT AF L + +
Sbjct: 310 TFEEANLPETLTRNISKAGYVKLTPVQKYSIPIVLAKRDLMACAQTGSGKTAAFLLPILA 369

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            ++ +           P A+ +APTREL  Q+  +       T +   V  GG       
Sbjct: 370 HMMRDGVAPHSLDLQEPEAIIVAPTRELINQIFLDARKFAYGTCIKPVVVYGGTQTFHSL 429

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R +  G +I+  TPGRL D I+ + + ++ L+ +VLDEAD MLD+GF  D++ +++S   
Sbjct: 430 RQIYQGCNILCATPGRLIDIIKREKIGLTKLRYLVLDEADRMLDMGFGPDMKVLVNSPGM 489

Query: 179 KRRMLMFSATISPAITTLAK-----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             +    +   S       +       + D + V +       SD++   + V    + +
Sbjct: 490 PSKEDRQTLMFSATFPERIQSLAKEFLKSDYLFVVVGQVGGACSDVEQIIIPVGQHGKKD 549

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V IL+  G +  +VF  T+                  ++ G+  Q+ER  AL   R G
Sbjct: 550 KLVEILQGLGIERTMVFVKTKK---------------RASIHGDRLQKEREEALADFRFG 594

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +AT+VAARG+D+ +++ VI  +LS N E  +HR GRTGR G  G ++     +  
Sbjct: 595 KCNVLVATNVAARGLDIENVQHVIIYDLSDNIEEYVHRIGRTGRCGNVGKAITFFDTDDN 654

Query: 354 ------RRAERLFREANVSVV 368
                 R   ++  +A   V 
Sbjct: 655 EDRTVARSLVKVLSDAQQEVP 675


>gi|195581486|ref|XP_002080565.1| GD10546 [Drosophila simulans]
 gi|194192574|gb|EDX06150.1| GD10546 [Drosophila simulans]
          Length = 782

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 200/402 (49%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY   T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYTYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|227524|prf||1705300A ATP dependent RNA helicase
          Length = 604

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 188/375 (50%), Gaps = 16/375 (4%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           ++ E +    +   T VQ+  +      +D+   AQTGSGKT  F   + S         
Sbjct: 152 LLLENIKLARFTKPTPVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVLSESFKTGPSP 211

Query: 70  SPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            P S          P A+ +APTRELA Q+  E +    ++ V   V  GG  +  + R+
Sbjct: 212 QPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLRE 271

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++      
Sbjct: 272 IERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVEDCDMTP 331

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D + +++        +I  + + V   D+ +A++
Sbjct: 332 VGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKVLYVENQDKKSALL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  T+    + T  L    F+  A+ G+ +Q ER  AL   R G A 
Sbjct: 392 DLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSERERALAAFRSGAAT 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQNMQ 353
           + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++         N+ 
Sbjct: 452 LLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIV 511

Query: 354 RRAERLFREANVSVV 368
           +    +  EAN  V 
Sbjct: 512 KGLHEILTEANQEVP 526


>gi|300717997|ref|YP_003742800.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299063833|emb|CAX60953.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 443

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 121/428 (28%), Positives = 196/428 (45%), Gaps = 15/428 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL E+GY   T++Q A + P L  +DVL SA TG+GKT A+ L +
Sbjct: 3   VTTFSELELDESLLKALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRVLILTPTRELAMQVADQARELAKYTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VV T GRL  +I+ +  +   +++++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDVVVATTGRLLQYIKEENFDCRAVESLILDEADRMLDMGFAQDIETIAAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ L+FSAT+             +      A   R+      +    A   +    + I
Sbjct: 181 RKQTLLFSATLEGDAIKDFSERLLNEPEEIEADPARRERKKILQWYYRADDVKHKTALLI 240

Query: 239 LRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 +    +VF   R  V      L E       L GEL Q +R+ A++ + DGR  
Sbjct: 241 HMLKQPEVTRSVVFVRKRERVHELCGWLREAGINTSYLEGELEQFKRNEAIKRVVDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+ D+  V + ++    +  LHR GRTGRAG+KG+++ ++  +     
Sbjct: 301 VLVATDVAARGIDIEDVSHVFNFDMPRTSDTYLHRIGRTGRAGKKGIAISLVEAHDNVLL 360

Query: 357 ERLFREANVSVVWEPA--------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            ++ R     +             P  E +  + ++++L     L   +  E +      
Sbjct: 361 GKVTRYIKEPLKSRTIDELRPTTRPPSEKLNGKPSKKVLAKRKELKQTEAKEAQP-RAKE 419

Query: 409 AKHDPEKI 416
              D + I
Sbjct: 420 RHRDTKNI 427


>gi|158514835|sp|A3LQ01|DED1_PICST RecName: Full=ATP-dependent RNA helicase DED1
          Length = 647

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E ++   +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 175 LDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYING 234

Query: 67  DRF---------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                       S    P  L +APTREL  Q+  E +    ++ V  AV  GG  + ++
Sbjct: 235 PAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQ 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R+L  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 295 IRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECD 354

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
               + R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 355 MPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKS 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L    A   I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 415 VLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 475 AAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 534

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 535 NVVKGLIDLLSEANQEVP 552


>gi|156083314|ref|XP_001609141.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796391|gb|EDO05573.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 994

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 177/381 (46%), Gaps = 6/381 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I   L  R Y     +Q   +   +  +DVL  A+TGSGKT+A+ L     +L + 
Sbjct: 395 LPDPILSLLQRRNYEKPFPIQMQCIPALMCGRDVLAIAETGSGKTMAYLLPAIRHVLYQ- 453

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +       + L IAPTRELA Q+G E   L    G+      GG  +  +   L+ G  
Sbjct: 454 PKLRENEGMIVLIIAPTRELASQIGVESSKLCKLVGIRTKAVYGGSPIGEQLNALKRGVE 513

Query: 127 IVVGTPGR---LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV GTPGR   +     GK  N+  +  VV+DEAD M DLGF   I  I+D+    R+  
Sbjct: 514 IVCGTPGRLIEVLTISNGKVTNLRRVTFVVIDEADRMFDLGFSPQISAIVDNIRPDRQTA 573

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT  P I  LAK      +++ +    +  S +D   +++    +  A++ +L    
Sbjct: 574 LFSATFPPTIEALAKKILTKPLQIIVGESGKSASQVDQHVMVLPERQKMYALLKLLGEWH 633

Query: 244 AKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              +I+ F + +         L +H +    L G   Q +R   LQ  RDG   + IAT 
Sbjct: 634 EHGSIIVFVNRQLDADSMYAELIKHGYDCAVLHGGQDQTDREFTLQDFRDGTKGILIATS 693

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ ++ LVI+     + E+ +HR GRTGRAG  G S   I      ++  + + 
Sbjct: 694 IAARGIDVKNVVLVINYATPDHIEDYVHRVGRTGRAGNIGTSYTFITPEEGAKSHDIIKA 753

Query: 363 ANVSVVWEPAPSVEAIRERDA 383
              S    P   ++ + E   
Sbjct: 754 MKASNQVVPI-ELQELAEMHL 773


>gi|150864373|ref|XP_001383156.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
 gi|149385629|gb|ABN65127.2| ATP-dependent RNA helicase of DEAD box family [Scheffersomyces
           stipitis CBS 6054]
          Length = 616

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 189/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E ++   +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 144 LDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYING 203

Query: 67  DRF---------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
                       S    P  L +APTREL  Q+  E +    ++ V  AV  GG  + ++
Sbjct: 204 PAPIAESTGAFSSHKVHPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQ 263

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----IL 173
            R+L  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I        
Sbjct: 264 IRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECD 323

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
               + R+ LMFSAT    I  LA+++ KD + +++        +I  + + V   ++ +
Sbjct: 324 MPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYVEDEEKKS 383

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L    A   I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 384 VLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 443

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 444 AAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNK 503

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  V 
Sbjct: 504 NVVKGLIDLLSEANQEVP 521


>gi|148263462|ref|YP_001230168.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
 gi|146396962|gb|ABQ25595.1| ATP-dependent RNA helicase DbpA [Geobacter uraniireducens Rf4]
          Length = 474

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 139/377 (36%), Positives = 207/377 (54%), Gaps = 10/377 (2%)

Query: 2   KIFENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   I   + L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L 
Sbjct: 15  KAFSSLHLKIHMLKNLASLGYAEMTPIQAHSLPLILAGKDVIAKAKTGSGKTAAFGIGLL 74

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           S L A + R        AL + PTRELA QVG+EL  L   T  +  +   GGV    + 
Sbjct: 75  SHLDATSSRV------QALVLCPTRELADQVGKELRRLARFTDNIKVLTLCGGVPFGPQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHIVVGTPGR+ DH+R   L+++ L+ +VLDEAD MLD+GF+D+I  ++D++PK
Sbjct: 129 GSLEHGAHIVVGTPGRILDHLRRGSLDLTCLQTLVLDEADRMLDMGFQDEISALIDATPK 188

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT   AI  ++    +         E    S I+     V   +R  A+  I
Sbjct: 189 KKQTLLFSATYPEAIAAMSATI-QHEPVAVSVDEVHDESAIEQVLYEVDKEERTEAVARI 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L ++  ++ +VFC+T+         L +  F  +A+ G+L Q+ER   L    +    V 
Sbjct: 248 LGHYRPESTLVFCNTKIECQEVADALVKRGFSALAIHGDLEQRERDQVLVRFANKSVSVL 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ ELS +PE  +HR GRTGRAG  G+ + ++     RR + 
Sbjct: 308 VATDVAARGLDIKELAAVINYELSRDPEIHIHRIGRTGRAGETGLGLSLVTAQESRRVQA 367

Query: 359 LFREANVSVVWEPAPSV 375
           +       +      S+
Sbjct: 368 IETALGTPIPRGELASL 384



 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 21/66 (31%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K K     ++  L  + GI    +G I V     +V +     D    
Sbjct: 394 PPMVTLCIDGGRKNKMRPGDILGALTGAGGIAASEVGKIDVFDFHAYVAIVRSSADQALS 453

Query: 524 TVKLDK 529
            +  +K
Sbjct: 454 CLTGNK 459


>gi|331682838|ref|ZP_08383457.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
 gi|331080469|gb|EGI51648.1| ATP-independent RNA helicase DbpA [Escherichia coli H299]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MSAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPTILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGR+ DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRMLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 449

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 203/411 (49%), Gaps = 23/411 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLV--------SAQTGSGKT 51
           K F  +     + +AL E  +   T +Q   +   +  +DV+          A TGSGKT
Sbjct: 4   KTFAELGICAPLLQALEELKHTTPTEIQTGCIPQAIAGRDVIGSVWKLVIGIAPTGSGKT 63

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
           +AF + +   L              A  ++PTRELA Q+  + E L A  GV   V +GG
Sbjct: 64  LAFAIPILHRLWDNPQ------GYFACVLSPTRELAYQISAQFEALGAAMGVRSVVIVGG 117

Query: 112 VSVHRERR-DLQNGAHIVVGTPGRLCDHIRGKGLNIS-HLKAVVLDEADEMLDLGFRDDI 169
                ++   L    HI+V TPGRL DH+         HL   VLDEAD +LDL F+ +I
Sbjct: 118 DDDRVQQAVQLAQKPHIIVATPGRLHDHLNFHTTQPIIHLGLQVLDEADRLLDLDFQREI 177

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVAL 228
             I+ S PK+R   +FSAT++  ++ L +    D VRV+ +              +L  L
Sbjct: 178 TEIMQSIPKERCTYLFSATMTANVSKLQRASLSDPVRVDASLFRYTTVSTLLQHYLLCPL 237

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            +++  +V ++        IVF  T A     + +L    F+ V L GEL+Q +R     
Sbjct: 238 VEKEVTLVYLINSLAQNLIIVFVRTVADAKCLSIILRSLGFEAVPLHGELTQSQRLGVFT 297

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G++R+ +ATDVA+RG+D+P++++VI+ ++ ++ ++ +HR GRT RAGR G S+ ++
Sbjct: 298 RFKSGKSRILVATDVASRGLDVPNVDVVINYDVPTHSKDYIHRVGRTARAGRAGKSILMV 357

Query: 349 PQNMQRRAERLFREANVSVVWEP--APSVEAIRERDAQ--RILQDPLFLDS 395
            Q       RL +  N  +   P     +  ++ER  +  R+ ++ L  +S
Sbjct: 358 TQYDAELMLRLEKVLNRKLDLYPTDLQEIALLKERVVEAGRLARNQLNEES 408


>gi|91210637|ref|YP_540623.1| ATP-dependent RNA helicase DbpA [Escherichia coli UTI89]
 gi|117623595|ref|YP_852508.1| ATP-dependent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218558330|ref|YP_002391243.1| ATP-dependent RNA helicase DbpA [Escherichia coli S88]
 gi|237705373|ref|ZP_04535854.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|91072211|gb|ABE07092.1| ATP-independent RNA helicase DbpA [Escherichia coli UTI89]
 gi|115512719|gb|ABJ00794.1| ATP-independent RNA helicase DbpA [Escherichia coli APEC O1]
 gi|218365099|emb|CAR02806.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           S88]
 gi|226900130|gb|EEH86389.1| ATP-independent RNA helicase DbpA [Escherichia sp. 3_2_53FAA]
 gi|294490917|gb|ADE89673.1| ATP-independent RNA helicase DbpA [Escherichia coli IHE3034]
 gi|307627083|gb|ADN71387.1| ATP-dependent RNA helicase DbpA [Escherichia coli UM146]
 gi|323949054|gb|EGB44946.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323956904|gb|EGB52636.1| DEAD/DEAH box helicase [Escherichia coli H263]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 201/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ+A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+        VL E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLEAE 381



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|198285649|gb|ACH85363.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Salmo salar]
          Length = 611

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 122/438 (27%), Positives = 197/438 (44%), Gaps = 19/438 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I     + L  RG   L  +Q    N     KDV+  A+TG+GKT+AF + L   
Sbjct: 35  FSNFRISPNTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + D      AP  L +APTRELA+QV ++ + +  K  V      GG S + +   +
Sbjct: 95  LQNDPDDKRRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTC--FYGGSSYNPQLDAI 152

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L++S LK VVLDE D+MLD+GF + +E IL +S +K  
Sbjct: 153 RSGIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDS 212

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A                                        A   +    
Sbjct: 213 ETNPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAA 272

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        IVFC T+   +  +   +          G++ Q++R   L+  R
Sbjct: 273 VIGDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLH-GDIPQKQREITLKGFR 331

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +AT+VAARG+D+P+++LV+      + E+ +HRSGRTGRAGR G+ +    + 
Sbjct: 332 SGTFEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRK 391

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            + +   + ++A ++      P+   I +   +DA R L D +   +I+        ++ 
Sbjct: 392 EEDQLRYVEQKAGITFKRVGVPTANDIIKSSSKDAVRFL-DSVPPQAIEYFRVSATKLIE 450

Query: 409 AKHDPEKIAAGFLRIHRA 426
            +   E ++A    I  A
Sbjct: 451 ERGAVEALSAALAHISGA 468


>gi|325688758|gb|EGD30767.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK115]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     +++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRNKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|167855638|ref|ZP_02478397.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
 gi|167853265|gb|EDS24520.1| ornithine carbamoyltransferase [Haemophilus parasuis 29755]
          Length = 406

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/364 (29%), Positives = 180/364 (49%), Gaps = 3/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL   
Sbjct: 15  IHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHHLLNH- 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P AL +APTRELAVQ+  +   L     + +A+  GG    ++ ++++ G  
Sbjct: 74  DIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLKEIERGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF- 185
           I++GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI +++   PK        
Sbjct: 134 ILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEERFTML 193

Query: 186 -SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT+S  +  LA     +A  V I    R    I       +  D+   ++ ++     
Sbjct: 194 FSATLSHRVRELAFEDMHNAEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLMEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF +T+         L+    +V  L+G++ Q++R   L     G   + +ATDVA
Sbjct: 254 DRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 314 ARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAIEEYIG 373

Query: 365 VSVV 368
            ++ 
Sbjct: 374 HAIP 377


>gi|197099360|ref|NP_001124720.1| ATP-dependent RNA helicase DDX3Y [Pongo abelii]
 gi|73620771|sp|Q5RF43|DDX3Y_PONAB RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|55725665|emb|CAH89614.1| hypothetical protein [Pongo abelii]
          Length = 658

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 189/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 236

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 356

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 417 VVWVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVP 566


>gi|256018403|ref|ZP_05432268.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332279457|ref|ZP_08391870.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
 gi|332101809|gb|EGJ05155.1| ATP-dependent RNA helicase DbpA [Shigella sp. D9]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQVAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSILPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|168241214|ref|ZP_02666146.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447332|ref|YP_002045697.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194405636|gb|ACF65855.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339660|gb|EDZ26424.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|167549858|ref|ZP_02343616.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325031|gb|EDZ12870.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCVDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
 gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Vibrio angustum S14]
          Length = 446

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + ++   +   T +Q+  +   +  KD+L S++TGSGKT+AF L     +    
Sbjct: 8   LDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY--R 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L + PTRELA QV  +L  L A T     + +GG + + + + L+N   
Sbjct: 66  SKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPM 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGRL DH+  +   +  L+ ++LDEAD MLDLGF   +  I    +   ++  M 
Sbjct: 126 FVVATPGRLADHLEHRSTRLDGLEMLILDEADRMLDLGFEAQLRRINEAANHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   S  +   ++            S            +   L  +   +  IL    
Sbjct: 186 SATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TD+
Sbjct: 246 YKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDI 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++ LVI+ ++  + E  +HR GRTGRAG KG ++ ++     +  + +    
Sbjct: 306 ASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAISLVGPKDWKSFKNVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     +E
Sbjct: 366 KQKIEFTTIEGLE 378


>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 411

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 195/373 (52%), Gaps = 2/373 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+ + T +Q   +   L ++DV+  AQTG+GKT AF L +   LLA 
Sbjct: 7   SLNSKLVNTLASLGFESPTPIQLEAIPAILAKRDVMAGAQTGTGKTAAFALPILHHLLAL 66

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +     +      AL + PTRELAVQV +        T + V +  GGVS+  +      
Sbjct: 67  SPLQELTAVKPIRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++ TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L
Sbjct: 127 GIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI +L+K   +D   + +A  N   ++I+     V    +   + +++R   
Sbjct: 187 LFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSKN 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDV
Sbjct: 247 WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    
Sbjct: 307 AARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEVVL 366

Query: 364 NVSVVWEPAPSVE 376
           +  +  +  P  E
Sbjct: 367 DKRLPQQWLPGFE 379


>gi|325497405|gb|EGC95264.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ECD227]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 202/388 (52%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P      L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL 
Sbjct: 1   MTAFSSLNVLPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------ATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +      +      + S + + + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +   + +VFC+T+         L +     +AL G+L Q++R   L    +G  R
Sbjct: 234 RLLSVYQPSSCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG+ G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+V  I    A+
Sbjct: 354 NIISDMLQLKLNWQMPPAVTTIVPLAAE 381



 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNWQMPPAVTTIVPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
              +   +  G K K     ++  L    G++   IG I V P   +V    EV+     
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKITVHPAHVYVAVRQEVAHKAWK 439

Query: 520 LLRRTVKLDKGIQLKYL 536
            L+      K  +++ L
Sbjct: 440 QLQGGKIKGKTCRVRLL 456


>gi|218548978|ref|YP_002382769.1| ATP-dependent RNA helicase DbpA [Escherichia fergusonii ATCC 35469]
 gi|218356519|emb|CAQ89142.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia
           fergusonii ATCC 35469]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 202/388 (52%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F ++   P      L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL 
Sbjct: 1   MTAFSSLNVLPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------ATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGI 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +      +      + S + + + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  +   + +VFC+T+         L +     +AL G+L Q++R   L    +G  R
Sbjct: 234 RLLSVYQPSSCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG+ G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+V  I    A+
Sbjct: 354 NIISDMLQLKLNWQMPPAVTTIVPLAAE 381



 Score = 54.2 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNWQMPPAVTTIVPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
              +   +  G K K     ++  L    G++   IG I V P   +V    EV+     
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKITVHPAHVYVAVRQEVAHKAWK 439

Query: 520 LLRRTVKLDKGIQLKYL 536
            L+      K  +++ L
Sbjct: 440 QLQDGKIKGKTCRVRLL 456


>gi|198243415|ref|YP_002215491.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937931|gb|ACH75264.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623237|gb|EGE29582.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 202/409 (49%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVS------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     + + W  AP+      R     L   +    I G +K  + 
Sbjct: 354 NILSEMLQLKLNWLNAPA------RQPSLPLAAEMATLCIDGGKKAKMR 396



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +         S    
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|327268478|ref|XP_003219024.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 2 [Anolis
           carolinensis]
          Length = 706

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 220 IESFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPI 279

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 280 LSQIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPC 339

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 340 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 399

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + +MFSAT    I  LA+++ ++ + + +        +I  +
Sbjct: 400 PQIRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQK 459

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 460 VVWVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 519

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR+ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 520 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 579

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 580 GLATSFFNERNINITKDLLDLLVEAKQEVP 609


>gi|324502742|gb|ADY41204.1| ATP-dependent RNA helicase DDX46 [Ascaris suum]
          Length = 973

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 201/462 (43%), Gaps = 6/462 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L +  Y   T++Q   +   +  +DV+  A+TGSGKT+AF L +   ++ +     
Sbjct: 324 ILNTLKKLEYTKPTAIQAQAIPAIMSGRDVIGIAKTGSGKTLAFLLPMFRHIM-DQPELE 382

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ ++PTRELA+Q  +E         + VA   GGV +  +  DL+ GA ++V 
Sbjct: 383 ELDGPIAVIMSPTRELAMQTWKEANKFAKPLNIRVACVYGGVGISDQIGDLKRGAEVIVC 442

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           T GRL D     +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSA
Sbjct: 443 TVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSA 502

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T    +  LA+      V + +  ++    D+    V++    +   ++ +   Y    N
Sbjct: 503 TFPRQMEALARKILDKPVEILVGGKSVVCDDVSQNVVILEEHQKMLKLLELLGVYWEHGN 562

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +         L    +    L G + Q +R + +   +  + ++ +AT VAAR
Sbjct: 563 VLVFVDKQEKADELVAQLMRSGYNCAPLHGGIDQFDRDSTILDFKAAKIKLLVATSVAAR 622

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANV 365
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I P   +R A  + R    
Sbjct: 623 GLDVKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPHGQERMAGEVCRAFET 682

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
           +    P    +   +  AQ   +         G          A+ + E       R+  
Sbjct: 683 ASKEPPEQLKKIWEDYKAQMAAEGKTVHMGGCGFSGSGYKYDQAEDEKEATRRKVTRLVH 742

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               A ++     +           R    G G   N   ++
Sbjct: 743 GMESAMDDDDDDEIEQQLSSMMKGKRRVIEGHGPSTNAPNAT 784


>gi|322373643|ref|ZP_08048179.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
 gi|321278685|gb|EFX55754.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           C150]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 197/467 (42%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I EAL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  E+           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLSPESGDV------QVVITAPSRELATQIYQATKQIAKHSATEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D I+   L I      V+DEAD  +D+GF D ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLIKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVYKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|291006385|ref|ZP_06564358.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 467

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 119/353 (33%), Positives = 186/353 (52%), Gaps = 7/353 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL E G  +  ++QE  L   LR +D++  A+TG+GKT+ FG+ +   L    D 
Sbjct: 3   PEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGDG 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL VQV R+L       G+      GG    ++   L++G  +V
Sbjct: 63  -----TPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLV 117

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL D    + L +  ++A+VLDEADEMLDLGF  DIE IL   P++R+ ++FSAT
Sbjct: 118 IGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSAT 177

Query: 189 ISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I T       Q   +R   A     H             D+   I   ++ +G   
Sbjct: 178 MPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRGL 237

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++F  T+ +  + +  L E  F   A+ G+L Q  R  AL+  R G+  + +ATDVAAR
Sbjct: 238 SMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAAR 297

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           GID+  +  V++ +   + +  +HR GRTGRAGR+G+++ ++  + + R + +
Sbjct: 298 GIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPRWKMI 350


>gi|163754240|ref|ZP_02161363.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
 gi|161326454|gb|EDP97780.1| possible ATP-dependent RNA helicase [Kordia algicida OT-1]
          Length = 450

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 194/410 (47%), Gaps = 16/410 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  + + +  A+ + G+   T +QE   +     KDV+  AQTG+GKT A+ L L
Sbjct: 1   MSTFQDFDLSKQLHYAIEDLGFTTPTPIQEQSFSVIRGGKDVVGIAQTGTGKTFAYMLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +FS    P  L + PTREL +QV  ++E       V +    GGV+++ + 
Sbjct: 61  LRDL-----KFSKQVNPRILVLVPTRELVIQVVEQIELFAKYINVRIVGVYGGVNMNTQA 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ GA IVV TPGRL D +  + L +  +K +V+DE D MLDLGFR  I  I +  P+
Sbjct: 116 QSLQQGADIVVATPGRLYDLVLSRALQLKSIKKLVIDEVDVMLDLGFRFQITNIFELLPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDN--AI 235
           +R+ +MFSAT++  +  L  ++     +++IA       +I      +     + N    
Sbjct: 176 QRQNIMFSATMTDDVNLLIDDFFIAPHKISIAVSGTPLDNISQTCYAVQNFYTKVNLLTH 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +   +   +K  +   + R +   F  +  +   +V  +    +Q  R  +++    G  
Sbjct: 236 LLKDKEIYSKVLVFISNKRIADRLFDCLQKDFGEEVAVIHSNKTQNYRIRSIENFNTGEN 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATDV ARG+DL  +  V +    + PEN +HR GR GRA  KG +V    +     
Sbjct: 296 RILVATDVMARGLDLDMITHVFNFNTPNYPENYMHRIGRAGRAKAKGNAVLFYTKKELEY 355

Query: 356 AERLFREANVSVVWEPAPSVEAI------RERDAQRILQDPLFLDSIQGD 399
            E + +  N  +     P    I       E+   R + +PL  + ++  
Sbjct: 356 KEAIEKLMNYEIPQLEFPEEVEISTQLAPEEQTRIREVNNPLKTEGLEKG 405


>gi|134097656|ref|YP_001103317.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133910279|emb|CAM00392.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 496

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 119/353 (33%), Positives = 186/353 (52%), Gaps = 7/353 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL E G  +  ++QE  L   LR +D++  A+TG+GKT+ FG+ +   L    D 
Sbjct: 3   PEIVRALGEAGIEHTFAIQELTLPLALRGEDLIGQARTGTGKTLGFGVPVLHRLQVPGDG 62

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL VQV R+L       G+      GG    ++   L++G  +V
Sbjct: 63  -----TPQALVVVPTRELCVQVARDLTDAGKHLGIRTLAVYGGRPYEQQIEALRSGVDLV 117

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL D    + L +  ++A+VLDEADEMLDLGF  DIE IL   P++R+ ++FSAT
Sbjct: 118 IGTPGRLLDLAEQQHLVLGKVRALVLDEADEMLDLGFLPDIERILHMVPEQRQTMLFSAT 177

Query: 189 ISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I T       Q   +R   A     H             D+   I   ++ +G   
Sbjct: 178 MPGPIITLARTFLRQPTHIRAEQADAGAIHERTKQFVYRAHAMDKTELIARAMQANGRGL 237

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++F  T+ +  + +  L E  F   A+ G+L Q  R  AL+  R G+  + +ATDVAAR
Sbjct: 238 SMIFTRTKRTAQKLSDELTERGFAAAAVHGDLGQGAREQALRAFRSGKVDILVATDVAAR 297

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           GID+  +  V++ +   + +  +HR GRTGRAGR+G+++ ++  + + R + +
Sbjct: 298 GIDVGGVTHVVNLQCPDDEKTYVHRIGRTGRAGREGVAITLVDWDEEPRWKMI 350


>gi|125526364|gb|EAY74478.1| hypothetical protein OsI_02369 [Oryza sativa Indica Group]
          Length = 792

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 182/365 (49%), Gaps = 6/365 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I + +   G+ + T +Q       L+ +DV+  A+TGSGKT+ + L  
Sbjct: 149 ITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPG 208

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  + +P S P  L +APTRELA Q+  E       + +      GG     + 
Sbjct: 209 FMHI--KRLQNNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQL 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  +VV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 267 RDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPP 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A++     V+V I S +    +S I     L+  S++   + 
Sbjct: 327 RRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLE 386

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR   + + ++   T   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGRSP 446

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+ +VI++   +  E+ +HR GRTGRAG  G++         + A
Sbjct: 447 ILVATDVAARGLDIKDIRVVINSPFPTGIEDYVHRIGRTGRAGATGVAYTFFCDQDSKYA 506

Query: 357 ERLFR 361
             L +
Sbjct: 507 ADLIK 511


>gi|91781411|ref|YP_556617.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
 gi|91685365|gb|ABE28565.1| ATP-dependent RNA helicase DbpA [Burkholderia xenovorans LB400]
          Length = 467

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 203/401 (50%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   
Sbjct: 15  SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           N       A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++G
Sbjct: 75  N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+
Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I            +    +E   ++ I  R   V   +R +A+  +L ++  
Sbjct: 189 FSATYPEGI-VKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVA
Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +   
Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGSLEQAQK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             V W     + A         L  P+    I G  K+ + 
Sbjct: 368 RDVEWHKLSELTATS----NEPLLPPMETLQILGGRKEKIR 404



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      + +R
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIGKINVTEMSTYVAVERSVAREAVR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|73984192|ref|XP_533327.2| PREDICTED: similar to ATP-dependent RNA helicase DDX18 (DEAD-box
           protein 18) (Myc-regulated DEAD-box protein) (MrDb)
           [Canis familiaris]
          Length = 669

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 176 TSFASLSSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 235

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 236 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMMYHVHTYGLIMGGSNRSAE 293

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 294 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 353

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 354 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 413

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 414 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 473

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 474 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 532

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 533 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 590

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 591 SHSLKQI 597


>gi|327260241|ref|XP_003214943.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Anolis
           carolinensis]
          Length = 666

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 113/452 (25%), Positives = 219/452 (48%), Gaps = 17/452 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +   + ++E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF +     +    
Sbjct: 181 ISENTLKGITEMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAIELIY--K 238

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +
Sbjct: 239 LKFMPRNGTGVLILSPTRELAMQTYGVLKELMTHHVHTYGLVMGGSNRSAEAQRLGNGIN 298

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 299 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLF 358

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LAK   K         +N++ + +   +   V+     R   +   L+ +
Sbjct: 359 SATQTRKVEDLAKISLKKEPLYVGVDDNKETATVEGLEQGYVVCPSEKRFLLLFTFLKKN 418

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TD
Sbjct: 419 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNADSGILLCTD 478

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R  
Sbjct: 479 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFL-RYL 536

Query: 361 REANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA- 417
           ++A V +         +  I+ +  +++++   FL     +  K        H  ++I  
Sbjct: 537 KQARVPLNEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKAYIRAYDSHSLKEIYN 595

Query: 418 ---AGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
                 L++  +          +++ S   R 
Sbjct: 596 VNNLDLLKVALSFGFKVPPFVDLNINSSHGRR 627


>gi|331662753|ref|ZP_08363676.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
 gi|331061175|gb|EGI33139.1| ATP-independent RNA helicase DbpA [Escherichia coli TA143]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----D 519
              +   +  G K K     ++  L    G++   IG I V P   +V V          
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 520 LLRRTVKLDKGIQLKYL 536
            L+      K  +++ L
Sbjct: 440 QLQGGRIKGKTCRVRLL 456


>gi|284921218|emb|CBG34284.1| ATP-independent RNA helicase [Escherichia coli 042]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGNLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|298345284|ref|YP_003717971.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315655703|ref|ZP_07908601.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
 gi|298235345|gb|ADI66477.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|315489767|gb|EFU79394.1| ATP-dependent RNA helicase [Mobiluncus curtisii ATCC 51333]
          Length = 525

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 135/495 (27%), Positives = 205/495 (41%), Gaps = 44/495 (8%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I  AL ++G ++   +Q   L   L  +D++  A+TG+GKT+ F + + 
Sbjct: 26  KTFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPIL 85

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++   D        +  P AL I PTRELA QV  E+          +    GGV   
Sbjct: 86  HDIIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFD 145

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D +    L +  ++ +V+DEADEMLD+GF  D+E ++  
Sbjct: 146 SQIEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQ 205

Query: 176 SPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P  R  ++FSAT+   +                 +    ++    +      V   ++ 
Sbjct: 206 IPPHRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKT 265

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  IL+       I+F  T+ +  R +  LAE  F   A+ G+L Q  R  AL+  R 
Sbjct: 266 EVIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRH 325

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG KG ++  I    
Sbjct: 326 GKVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWED 385

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-AKH 411
             R                             R++   L LD     E       L +  
Sbjct: 386 LTRW----------------------------RVINRTLDLDFADPQETYHTSPHLYSDL 417

Query: 412 DPEKIAAGFL---RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           D    A  +L   R  RAGL A E          R   R   +    G    +  +G+  
Sbjct: 418 DIPTDATAYLPRFRRVRAGLEAEELEDLGGRDPARPGKRHAGKGSGAGRRKSEKGRGT-- 475

Query: 469 FSLSVGSKQKAEARW 483
              +   K   + R 
Sbjct: 476 -RKNTKKKHDFKERE 489


>gi|200389990|ref|ZP_03216601.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199602435|gb|EDZ00981.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCEAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ +++    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQSLLPLAAE 381



 Score = 53.8 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQSLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|148985890|ref|ZP_01818984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|169832682|ref|YP_001694222.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|147922036|gb|EDK73160.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP3-BS71]
 gi|168995184|gb|ACA35796.1| ATP-dependent RNA helicase [Streptococcus pneumoniae Hungary19A-6]
 gi|301799777|emb|CBW32346.1| putative helicase [Streptococcus pneumoniae OXC141]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|322824367|gb|EFZ29795.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 395

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 185/372 (49%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   +   GY   T++Q+  + P  + +D++  A +GSGKT AF + L  
Sbjct: 24  TFEAMGLKEELLRGMYGYGYKKPTAIQKRFIVPFTQSRDLVAQASSGSGKTSAFCICLLQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                    S       L ++PTRELA+Q       +    G+     IGG SV  + R 
Sbjct: 84  VCQ------SALRETQGLVLSPTRELAMQTQDLCNNIGHHMGLAAYASIGGKSVEDDIRR 137

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IV GTPGR+ D I+ + L ++HLK +VLDEADEML  GF+  I  I    P  +
Sbjct: 138 LESGVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPPLQ 197

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +      +    K   +    +    E    S + Y   +    ++   + ++  
Sbjct: 198 VVLVSATLPVDVLEMTEKFMTEPVRILVRRDEITVDSIMQYFVAVDEEKNKFETLCDLYD 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A++FC+TR  V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+
Sbjct: 258 TLTIAHAVIFCNTRKKVEQLAKKMRKEKFSVSCMHGDMPQAERDEIMRNFREGKSRVLIS 317

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ +RGID+  + LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R    + 
Sbjct: 318 TDLWSRGIDVEQVSLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDVE 377

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 378 QFYATQIEELPA 389


>gi|125718667|ref|YP_001035800.1| ATP-dependent RNA helicase [Streptococcus sanguinis SK36]
 gi|125498584|gb|ABN45250.1| ATP-dependent RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|323203477|gb|EFZ88501.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 380

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 196/382 (51%), Gaps = 11/382 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++   Q+  +R+ I + +   +             + + + 
Sbjct: 175 PETRQTLLFSATWPDAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSVHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
             L     + + W  AP+ + +
Sbjct: 354 NILSEMLQLKLNWLNAPARQPL 375


>gi|73539745|ref|YP_294265.1| ATP-dependent RNA helicase DbpA [Ralstonia eutropha JMP134]
 gi|72117158|gb|AAZ59421.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Ralstonia eutropha JMP134]
          Length = 474

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 211/405 (52%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A+TGSGKT AF LAL   
Sbjct: 19  FSTLPLAPATLATLAQLGYDEMTPIQAASLPLTLAGHDLIAQAKTGSGKTAAFALALLHR 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  +   
Sbjct: 79  LD------ARRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDS 132

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAH+VVGTPGR+ DHI    L +S +  +VLDEAD MLD+GF DDI ++    P++R
Sbjct: 133 LVHGAHVVVGTPGRILDHIDRGSLELSAINTLVLDEADRMLDMGFFDDISYVASRCPRER 192

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    I  L++ + +    V +A ++   S        V  S+R +A+  +L 
Sbjct: 193 QTMLFSATYPAGIDKLSQKFLRKPQEVKLAEKHDSSSI-RQYFYEVDESERLSAVGRLLD 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+T+A       +L    FQ +AL G+L Q++R   L    +G   V +A
Sbjct: 252 HFRPASTLAFCNTKARCRDLVDLLRGQGFQALALHGDLEQRDRDQVLVQFANGSCSVLVA 311

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ E++ +PE  +HR GRTGRAG +G +  ++  +   R   L 
Sbjct: 312 TDVAARGLDIAQLEAVINVEITPDPEVHIHRIGRTGRAGEEGHAFSLVSMDEMGRVGNLE 371

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       W P   +  +R    +R+L  P+    + G  K+ + 
Sbjct: 372 QHHGGEFEWHP---LAELRAASTERLL-PPMVTLQMLGGRKEKIR 412



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                  +  G K+K     ++  L   +G  ++ IG I V    T++ V 
Sbjct: 396 PPMVTLQMLGGRKEKIRPGDILGALTGEAGFTKEQIGKINVMEMSTYIAVD 446


>gi|255726050|ref|XP_002547951.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
 gi|240133875|gb|EER33430.1| ATP-dependent RNA helicase ded1 [Candida tropicalis MYA-3404]
          Length = 665

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/378 (30%), Positives = 193/378 (51%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E ++   +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 193 LDELLVENITLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYLNG 252

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P +          P  L +APTREL  Q+  E +    ++ V   V  GG  + ++
Sbjct: 253 PAPVPETTGAFSSHKVYPTILVMAPTRELVSQIYEESKKFSYRSWVRPCVVYGGADIGQQ 312

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L  G  ++V TPGRL D +    ++++++K +VLDEAD MLD+GF   I  I++   
Sbjct: 313 MRNLDRGCDLLVATPGRLKDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECD 372

Query: 178 KK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LA+++ KD V +++        +I  + + V   D+ +
Sbjct: 373 MPEVTDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKILYVEDEDKKS 432

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+++L  +     IVF  T+    +    L +  F   A+ G+ SQ ER  AL   ++G
Sbjct: 433 VILDLLAANENGLTIVFTETKRMADQLADFLYDQGFPATAIHGDRSQYEREKALAAFKNG 492

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---PQ 350
            A + +AT VAARG+D+P++  VI+ +L S+ ++ +HR GRTGRAG  G++        +
Sbjct: 493 AAPILVATAVAARGLDIPNVGHVINFDLPSDIDDYVHRIGRTGRAGNVGIATSFFNRGNK 552

Query: 351 NMQRRAERLFREANVSVV 368
           N+ +    +  EAN  + 
Sbjct: 553 NVVKGLIEILSEANQPIP 570


>gi|327268480|ref|XP_003219025.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 3 [Anolis
           carolinensis]
          Length = 709

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 223 IESFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPI 282

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 283 LSQIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPC 342

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 343 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 402

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + +MFSAT    I  LA+++ ++ + + +        +I  +
Sbjct: 403 PQIRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQK 462

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 463 VVWVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 522

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR+ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 523 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 582

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 583 GLATSFFNERNINITKDLLDLLVEAKQEVP 612


>gi|297735665|emb|CBI18352.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 196/386 (50%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 217 LSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 276

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 277 PISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 336

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 337 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 396

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V 
Sbjct: 397 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVK 456

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L
Sbjct: 457 GSEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISL 516

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 517 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 576

Query: 348 IPQNMQ---RRAERLFREANVSVVWE 370
           +  +        +++  ++N  V  E
Sbjct: 577 LTLHDSDVFYDLKQMLIQSNSPVPPE 602


>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
          Length = 851

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 180/384 (46%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N+P+ I   +    Y + T VQ+  L   L ++D++  AQTGSGKT AF L +
Sbjct: 383 INSFEAANLPETIAANVKRANYDSPTPVQKFSLPIILADRDLMACAQTGSGKTAAFLLPV 442

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L+        FS    P A+ + PTREL  Q+  E       T +   V  GG S +
Sbjct: 443 LTNLVRTGLASSSFSEKQLPQAIIVGPTRELVYQIYLEARKFSRGTIIRPVVAYGGTSTN 502

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + ++LQ G H+++ TPGRL D I    + +S ++ ++LDEAD MLD+GF  +I  ++DS
Sbjct: 503 YQLKELQKGCHLLIATPGRLMDFINRGKIGLSSVQYIILDEADRMLDMGFETEIRKLVDS 562

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSD 230
                +    +   S       +    D +R +             SD+    + V   D
Sbjct: 563 PGMPAKNERHTLMFSATFPDEIQKLAHDFLREDFLFLTVGRIGGACSDVTQVVLQVDQGD 622

Query: 231 RDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + N    +           +VF  T+ S       L +  +   ++ G+  QQER  AL+
Sbjct: 623 KRNKLIELLADVADTGSRTLVFVETKRSADFLACSLCQEGYPTTSIHGDRLQQEREEALR 682

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G+  + +AT VAARG+D+P +E V++ +L S  +  +HR GRTGR G  G +    
Sbjct: 683 DFKSGKCPILVATSVAARGLDIPKVEHVVNYDLPSEVDEYVHRIGRTGRCGNLGRATSFY 742

Query: 349 PQ----NMQRRAERLFREANVSVV 368
                 ++ R   ++  ++   V 
Sbjct: 743 DDSANASLARSLVKILADSIQEVP 766


>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
 gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
          Length = 537

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 179/381 (46%), Gaps = 12/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P    E +  + Y   T +Q       L   +++  A+TGSGKT+AF L  
Sbjct: 102 IQFFEEVCFPDYCMEEIRRQRYSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPA 161

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+        +   V      GG    ++ 
Sbjct: 162 ILHINGQQP-LQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQA 220

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I++ TPGRL D ++    N+     +VLDEAD MLD+GF   I  +L     
Sbjct: 221 SDLKRGVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRP 280

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RD 232
            R++LM+SAT    +  LA+++    +++NI S     +    + V V          +D
Sbjct: 281 DRQILMWSATWPKEVRQLAEDFLGSYIQINIGSLELSANHNIRQYVEVCGEHEKSAKLKD 340

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                  + H     I+F +T+       + +      V ++ G+ SQ +R + L   R 
Sbjct: 341 LLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIHGDKSQMDRDSVLNDFRS 400

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR   KG S     +  
Sbjct: 401 GRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRTGRKLSKGTSYAFFTRKN 460

Query: 353 QRRAE---RLFREANVSVVWE 370
            R A     + REAN +V  E
Sbjct: 461 ARCARALIDILREANQNVNPE 481


>gi|168260141|ref|ZP_02682114.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350697|gb|EDZ37328.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|302558562|ref|ZP_07310904.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
 gi|302476180|gb|EFL39273.1| ATP-dependent RNA helicase DeaD [Streptomyces griseoflavus Tu4000]
          Length = 868

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G +    +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 48  LPET-AEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPA 106

Query: 63  LAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 107 DVEAGRARPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVE 166

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D    K LN+ H+KA+VLDEADEMLDLGF  D+E I++  P K
Sbjct: 167 ALKKGVDVVVGTPGRLLDLAGQKKLNLKHVKALVLDEADEMLDLGFLPDVEKIINFLPVK 226

Query: 180 RRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+      +     +            E    ++           D+   + 
Sbjct: 227 RQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTTQFVYRAHNMDKPEMVS 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G    +VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 287 RILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 346

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG KG ++ ++  +   R 
Sbjct: 347 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 406

Query: 357 ERLFREANVSVVWEP 371
           + + +  ++     P
Sbjct: 407 QLINKALDLGFGNPP 421


>gi|296161858|ref|ZP_06844659.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
 gi|295887877|gb|EFG67694.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. Ch1-1]
          Length = 467

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 137/401 (34%), Positives = 206/401 (51%), Gaps = 12/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   
Sbjct: 15  SLPPATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDVR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
           N       A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++G
Sbjct: 75  N------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHG 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+
Sbjct: 129 AHIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLL 188

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I            +    +E   ++ I  R   V   +R +A+  +L ++  
Sbjct: 189 FSATYPEGI-VKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVA
Sbjct: 248 VSTLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   L +   
Sbjct: 308 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMSEMGRVGSLEQAQK 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             V W     + A      +R+L  P+    I G  K+ + 
Sbjct: 368 RDVEWHKLSELTATSN---ERLL-PPMETLQILGGRKEKIR 404



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      D +R
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIGKINVTEMSTYVAVERSVARDAVR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|168025828|ref|XP_001765435.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683285|gb|EDQ69696.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 535

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 198/386 (51%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +    
Sbjct: 121 LSPELLKAVQKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLTYISKLP 180

Query: 67  DRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                  A  P A+ +APTRELA Q+  E         + V   +GG S+  +   L+ G
Sbjct: 181 PMTEEIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLDIRVVSIVGGQSIEEQGFKLRQG 240

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 241 CEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPE 300

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD+    R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V 
Sbjct: 301 NEDAELDTHKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVK 360

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            +++ + +  +L   G K AI+F +T+ S    ++ L ++ ++V  L G  +Q++R  +L
Sbjct: 361 ETEKLDRLCRVLNDMGDKTAIIFVNTKKSADTLSRQLDKNGYRVTTLHGGKTQEQREVSL 420

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R+ R    +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 421 DGFRNKRFNCLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGIATTF 480

Query: 348 IP---QNMQRRAERLFREANVSVVWE 370
           +     ++    +++  ++N  V  E
Sbjct: 481 LTLHDTDVFYDLKQMLVQSNSPVPPE 506


>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
          Length = 630

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/396 (26%), Positives = 184/396 (46%), Gaps = 18/396 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +P+ + + + +  Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 199 IHTFDDAQLPETVRDNVRKANYTKPTPVQKYSIPIVNGDRDLMACAQTGSGKTAAFLLPV 258

Query: 59  ASTLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +        D FS    P A+ + PTREL  Q+  E       T +   V  GG SV
Sbjct: 259 LAGIFRNGLKSVDSFSGKQTPQAIIVGPTRELVYQIFIEARKFARSTMIKPVVAYGGTSV 318

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  DL  G +I++ TPGRL D I    ++   ++ ++LDEAD MLD+GF  +I  ++ 
Sbjct: 319 RSQLSDLSRGCNILIATPGRLLDFITKGKVSCECVEYLILDEADRMLDMGFEPEIRRLVA 378

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALS 229
           +     +    +   S       +    + +R +             SD+    V +   
Sbjct: 379 APGMPDKNTRHTLMFSATFPDEIQKLAHEFLREDFLFLTVRRVGGACSDVTQSMVQIDQD 438

Query: 230 DRDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           D+ +    +       A   +VF  T+ +       L++      ++ G+  Q+ER  AL
Sbjct: 439 DKRDKLMELLADVAETAARTLVFVDTKRNADFLATFLSQEGLPTTSIHGDRQQRERETAL 498

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              ++GR  + IAT VAARG+D+P +E VI+ +L S+ +  +HR GRTGR G  G +   
Sbjct: 499 LDFKNGRCPILIATSVAARGLDIPKVEHVINYDLPSDIDEYVHRIGRTGRCGNLGSATSF 558

Query: 348 IPQN----MQRRAERLFREANVSVV-WEPAPSVEAI 378
              +    + R   ++  +A   V  W  + ++ A+
Sbjct: 559 YSDDKDNALARSLVKVLADAQQDVPGWLESSALSAV 594


>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
          Length = 706

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/401 (27%), Positives = 191/401 (47%), Gaps = 10/401 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   +  A+  +G+   T +Q   +   L  +D++  ++TGSGKT AF + L + 
Sbjct: 12  FESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPLINK 71

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L       S       L + PTRELA+Q+   L+ L   + +  ++ +GG     +   L
Sbjct: 72  LQNH----STVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEGQFESL 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   I++ TPGR+  H+    L +S ++ V+ DEAD + ++G  D ++ IL   P +++
Sbjct: 128 ASNPDILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLFEMGLADQLKQILSHLPSQKQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSATI   ++  A    KD +   +  E +    +    +  A  ++ +A +  L  
Sbjct: 188 SLMFSATIPEQLSMFASVGLKDYIFCKLDKEFQLPDSMQLHFLFAANDNKLSA-LIYLIR 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F STR  V   +  L +     V + G++ Q +R   L   +  + +V I T
Sbjct: 247 SLDDTCLIFASTRFLVDMLSYALNKFHISNVHVYGKMDQLDRKEQLDNFKRNQVKVLIVT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RGIDLP +  VIH +  SNP+  +HRSGRT RAG+ G    +I        +    
Sbjct: 307 DLASRGIDLPFVANVIHYDYPSNPKIFIHRSGRTARAGKAGYVYALISSEEILYIKETMI 366

Query: 362 EANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQGD 399
                +V E     PS+        + ++Q+   L+ +  D
Sbjct: 367 YVGRKLVNEGDFSDPSLSFYGHMPIELLMQNQEKLNDLNDD 407


>gi|198456267|ref|XP_001360280.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
 gi|198135552|gb|EAL24855.2| GA15282 [Drosophila pseudoobscura pseudoobscura]
          Length = 785

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRKKLTALEPEIQNILDEEQAER 561


>gi|195149497|ref|XP_002015694.1| GL11206 [Drosophila persimilis]
 gi|194109541|gb|EDW31584.1| GL11206 [Drosophila persimilis]
          Length = 785

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGIRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRKKLTALEPEIQNILDEEQAER 561


>gi|194445037|ref|YP_002040904.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403700|gb|ACF63922.1| ATP-independent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 457

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVS------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHKPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|149010613|ref|ZP_01831984.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|303255825|ref|ZP_07341866.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|303266290|ref|ZP_07352181.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
 gi|147765094|gb|EDK72023.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae SP19-BS75]
 gi|301801607|emb|CBW34305.1| putative helicase [Streptococcus pneumoniae INV200]
 gi|302597209|gb|EFL64314.1| putative helicase [Streptococcus pneumoniae BS455]
 gi|302644220|gb|EFL74476.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Streptococcus pneumoniae BS457]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|324991749|gb|EGC23681.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK353]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E D         A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEEADTV------QAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYMAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|189235329|ref|XP_975300.2| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
           [Tribolium castaneum]
          Length = 553

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 168/381 (44%), Gaps = 18/381 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+  N+  +I   + + GY+  T VQ+  +   L  +++L  A TGSGKT AF + +
Sbjct: 114 VKTFDDLNVDPIIINNVKKCGYIEPTPVQKQAVPIMLEGRNLLACAPTGSGKTAAFLIPI 173

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +        AL + PTRELA Q  RE   L    G  V V         + 
Sbjct: 174 LHDL-----KGPRKEGFRALVLCPTRELAKQTQRECIRLSEGKGFHVHVISKINKALIQY 228

Query: 119 RDLQNGA-HIVVGTPGRLCDHIRGKGL-----NISHLKAVVLDEADEMLDLGFRDDIEFI 172
               +    I++ TP R+C  ++         NI  L     D+  E  + GFR+ ++ I
Sbjct: 229 GPNSSQKFDILITTPNRVCFLLKQDQAALSLANIKWLVIDEADKLFETGNRGFREQLDQI 288

Query: 173 -LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD- 230
               + K++++ MFSAT +P +     +  K  VR+ +   N     +D   + V     
Sbjct: 289 LNACTNKEKKVAMFSATYTPMVAKWCVHNMKGLVRITVGQRNAAADTVDQELLFVGNEQG 348

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +  A  ++++       +VF  ++    +    L      V A+  + +Q +R N ++  
Sbjct: 349 KLLAFRDLVKKGLTPPVLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSF 408

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+GR  V I T++ ARGID   + LVI+ +   +  + +HR GR GRAGR G ++     
Sbjct: 409 REGRIWVLICTELMARGIDFKGVNLVINYDFPPSAISYVHRVGRAGRAGRTGKAITFFTV 468

Query: 351 N---MQRRAERLFREANVSVV 368
                 R    + +E+   V 
Sbjct: 469 ENTVNLRSIAYVLKESGCEVP 489


>gi|310756762|gb|ADP20522.1| ATP-dependent RNA helicase DDX3X [Heterocephalus glaber]
          Length = 662

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 117/390 (30%), Positives = 195/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEDIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYREGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++         N+ +    L  EA   V 
Sbjct: 539 GLATSFFNDRNANITKDLLDLLVEAKQEVP 568


>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
 gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
          Length = 383

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 198/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPNLKKAIDALGFTTMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLISIMND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L    G  VV +  G     ++ +
Sbjct: 65  LLNNPIQEQRYRGEPRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LNKAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA +D+   +  
Sbjct: 185 EQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKADKYKLLQE 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR    +  ++F + R  V +    L    ++VV LSGE++Q +R   L   ++G+  +
Sbjct: 245 ILRDEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG  G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTSGVSISFLAEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGQKLP 375


>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
 gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
          Length = 768

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/366 (31%), Positives = 185/366 (50%), Gaps = 6/366 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+   P  +  A++++ Y   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 218 IKNFEDCGFPVPLMNAIAKQAYQKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 278 IVHIM-DQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +V+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 337 KELKAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 397 GRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVIPSDAEKMPWLLE 456

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF S +A V    + L +  F++ AL G+  Q  R   LQ  + G   
Sbjct: 457 KLPGMIDDGDVLVFASKKARVDEIERELNQRGFRIAALHGDKDQASRMETLQKFKSGTYH 516

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARF 576

Query: 356 AERLFR 361
           A  L +
Sbjct: 577 AGELVQ 582


>gi|118344314|ref|NP_001071981.1| zinc finger protein [Ciona intestinalis]
 gi|92081542|dbj|BAE93318.1| zinc finger protein [Ciona intestinalis]
          Length = 627

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 184/400 (46%), Gaps = 20/400 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L ++     T +Q   +   L  +D++  A TGSGKT+ F L L  
Sbjct: 191 MK----FPKPIIIGLKKKHIRKPTPIQTQGIPVVLSGRDMIGIAFTGSGKTLVFTLPLLM 246

Query: 61  TLLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGV 112
             + +  +        P  L + P+RELA Q  + + +            + +A+CIGG+
Sbjct: 247 FCIEQEKKLPFLQNEGPYGLIVCPSRELARQTHQVMSYYAKHLEGGGLPSLRIALCIGGI 306

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
                   ++ G H V+ TPGRL D +  K +N+   + + LDEAD M+D+GF +D+  I
Sbjct: 307 PAKETVNIIRKGCHAVIATPGRLMDMLNKKMMNLGVCRFLCLDEADRMIDMGFEEDVRTI 366

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   A++     V VN+        DI      V    + 
Sbjct: 367 FSYFKGQRQTLLFSATMPKKIQNFARSALVCPVTVNVGRAGAASLDIIQEVEYVKDEAKV 426

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++N L+       +VF   +  V    + L     + VA+ G   Q+ERS A+ + R 
Sbjct: 427 VHLLNCLQKTSPP-VLVFAQKKKDVDDIHEYLLLKGVEAVAIHGGKDQEERSRAVDLFRT 485

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-- 350
               V +ATD+A++G+D   ++ V++ ++  + EN +HR GRTGR+G  G++   I +  
Sbjct: 486 REKDVLVATDIASKGLDFEGIKHVLNYDMPDDIENYVHRIGRTGRSGCTGIATTFINKSC 545

Query: 351 --NMQRRAERLFREANVSVV---WEPAPSVEAIRERDAQR 385
             +       L  EA   +     +  P+ E   E   +R
Sbjct: 546 DSSTLLDLRALLIEAKQKIPEILEQLGPAEENFMELGGER 585


>gi|89075877|ref|ZP_01162256.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
 gi|89048406|gb|EAR53983.1| putative ATP-dependent RNA helicase DbpA [Photobacterium sp. SKA34]
          Length = 461

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 203/388 (52%), Gaps = 16/388 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +
Sbjct: 10  NLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG     +   L++G
Sbjct: 70  RFRV------QTLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   L +  L  +VLDEAD ML++GF+D ++ I+D +P  R+ L+
Sbjct: 124 AHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAIIDVAPSDRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++AK   ++ V V + S +   S   +   + +  DR  A+  +L  H  
Sbjct: 184 FSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+      +  L ++ F  +AL G+L Q+ER   L +  +    + +ATDVA
Sbjct: 244 ESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+  L+ + E  +HR GRTGRAG KG++  +       +   L    +
Sbjct: 304 ARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +  E  P         A+ +L  P F
Sbjct: 364 RPISGEALP---------AEHLLDQPTF 382



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G KQK     ++  L   +GI    +G I V     +V V  + V    
Sbjct: 383 RPEMVTLMIDGGKKQKVRPGDILGALTGENGIAGSDVGKINVFDFCAYVAVKREVVRAAL 442

Query: 523 RTVKLDK 529
           + ++  +
Sbjct: 443 KKLENGR 449


>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
          Length = 908

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 6/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D +  A+TGSGKT AF   +   ++ + 
Sbjct: 262 FDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQK 321

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +   P   P+A+ + PTREL  Q+  E +      G+      GG S+  + + LQ GA 
Sbjct: 322 E-LEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAE 380

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  ++  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 381 IVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 440

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + DI     ++         +      +  A
Sbjct: 441 ATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSA 500

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF + +A+       L +  + +  L G++ Q ER+  +   +     V +ATDVA
Sbjct: 501 GSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVA 560

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE-- 362
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG++  ++       A  L R   
Sbjct: 561 ARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLE 620

Query: 363 -ANVSV 367
            AN SV
Sbjct: 621 GANQSV 626


>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
 gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
          Length = 786

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 183/380 (48%), Gaps = 11/380 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I +A+ ++GY   T +Q   L   L   DV+  A+TGSGKT AF + +   
Sbjct: 26  FESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 85

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A     SP     AL ++PTRELA+Q  +  + L   T + + V +GG S+  +   L
Sbjct: 86  LRAH----SPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQL 141

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD + ++GF + +  IL    + R
Sbjct: 142 SKNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELR 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNI 238
           + L+FSAT+   +   AK   KD + V + +E +   D+      +   ++      +  
Sbjct: 202 QTLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLR 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  +VF ST+  V    +VL      +  + G + Q  R   +   R  +  + 
Sbjct: 262 EVVSAEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+P L+ V++ +  + P+  +HR GR  RAGR G +   +  +       
Sbjct: 322 LVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLD 381

Query: 359 LFREANVSVVWEPAPSVEAI 378
           L     +S    PAP+ E I
Sbjct: 382 L--HLFLSKPVRPAPTEEDI 399


>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
 gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
          Length = 750

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 224/468 (47%), Gaps = 21/468 (4%)

Query: 2   KIFEN-----IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           K+F N     + + + +AL + GY   + +Q A +   L  KD++  A TGSGKT AF +
Sbjct: 234 KVFNNFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKTAAFMI 293

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVH 115
            +   L+ +  + +   +   + +APTRELA+QV    + L     G+   + +GG+++ 
Sbjct: 294 PIIERLIYKPAKVA---STRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLNLR 350

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           ++ + L+    IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D+I  I+ 
Sbjct: 351 QQEQILKTRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEIMH 410

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P KR+ ++FSAT++  I  L     K  VRV      +  S +    V +   D    
Sbjct: 411 LLPSKRQTMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRKRDHLKP 470

Query: 235 IVNILRYHG-----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                          K  +VF S +  V R   +L      V  L G L+Q++R  ++  
Sbjct: 471 STLFYLIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSINK 530

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +     V I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + 
Sbjct: 531 FKSLEVPVLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSFVG 590

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           +  Q R   + + A  S       ++   R  D  +I +    ++S+    K ++D    
Sbjct: 591 ETSQER--SIVKSAIKSAQESGEKNLPVGRNVDWNQIEEINKTVESMSDTVKDILD---E 645

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           +   ++I    +++ + G    +    +     R  F+ ++      G
Sbjct: 646 EKQEKEILQAEMQL-KKGENLIKHKQEIESRPKRTWFQTETEKKNSKG 692


>gi|261340877|ref|ZP_05968735.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
 gi|288317308|gb|EFC56246.1| ATP-dependent RNA helicase SrmB [Enterobacter cancerogenus ATCC
           35316]
          Length = 442

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/394 (29%), Positives = 189/394 (47%), Gaps = 6/394 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + +  AL  +G+   T++Q A + P L  +DVL SA TG+GKT A+ L +
Sbjct: 3   VTTFSELELDESLLNALESKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPV 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L A T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAANTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + + ++FSAT           +  +         S   +     +      L  +   + 
Sbjct: 181 RNQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNLEHKIELLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+   A   IVF   R  V    ++L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 QLLKQEDATRTIVFVRKRERVHELAEILRNAGINNCYLEGEMAQVKRTEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG+++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGIAISLVEAHDHLLL 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           +++ R  +  +       +       ++++   P
Sbjct: 361 QKIGRYVDEPLKSRVIDGLRPTTRAPSEKMTGKP 394


>gi|255534707|ref|YP_003095078.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340903|gb|ACU07016.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 450

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 186/379 (49%), Gaps = 9/379 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P+ I + L++      T +QE  + P L  +DV+  AQTG+GKT+A+ L +     
Sbjct: 9   FE-LPEKILDVLADSNLFEPTPIQEKTIKPILSGRDVMGIAQTGTGKTLAYLLPVL---- 63

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +  +++    P  L + PTREL VQV   ++ L       V    GGV++  ++    +
Sbjct: 64  -KTWKYNKNGNPTVLILVPTRELVVQVSEIVKNLTQHLTARVLGIYGGVNIKTQKLLFND 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ D      +++  ++ +++DE DEML+LGF+  +  I     +KR+ +
Sbjct: 123 GCDILVGTPGRIMDLAIDNAISLKEVQKLIVDEFDEMLNLGFKMQLTTIFTMMKEKRQNI 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDN--AIVNILR 240
           +FSAT++ A+  +   Y  D V +++A        I      +     + N    +    
Sbjct: 183 LFSATMTEAVDAVLYEYFADPVEISLAKSGTPLEKITQIGYKVENFHTKINLLEHLLKSD 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              +K  I   + R +   FTK+      Q   +    SQ  R NA++   +   R  I 
Sbjct: 243 TDFSKVLIFCNNKRNADYLFTKIDEIFPDQFDVIHSNKSQNYRLNAMRSFENKEVRGLIT 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARG+D+ D+  VI+ E+   PE  +HR GRTGRA + G++V  + +  +     + 
Sbjct: 303 TDIMARGLDISDITHVINFEIPEVPEQYIHRIGRTGRADKDGIAVSFVTKKEETSLLDIE 362

Query: 361 REANVSVVWEPAPSVEAIR 379
              + +V+ +  P+   I 
Sbjct: 363 ILMDKAVLIKDFPAEVKIN 381


>gi|207856830|ref|YP_002243481.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708633|emb|CAR32955.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 457

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 135/409 (33%), Positives = 202/409 (49%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     + + W  AP+      R     L   +    I G +K  + 
Sbjct: 354 NILSEMLQLKLNWLNAPA------RQPSLPLAAEMATLCIDGGKKAKMR 396



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +         S    
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|90578403|ref|ZP_01234214.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
 gi|90441489|gb|EAS66669.1| putative ATP-dependent RNA helicase DbpA [Vibrio angustum S14]
          Length = 461

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 202/388 (52%), Gaps = 16/388 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L+  GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  +
Sbjct: 10  NLNPDLLSNLTSLGYDAMTPIQAQSLPLILEGKDVIAQGKTGSGKTAAFGLGLLQNLKVK 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV +E+  L      + V    GG     +   L++G
Sbjct: 70  RFRV------QTLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGTPFGPQIGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ +H+R   L +  L  +VLDEAD ML++GF+D ++ I D +P  R+ L+
Sbjct: 124 AHIIVGTPGRVEEHVRKGFLCLDELNTLVLDEADRMLEMGFQDSLDAITDVAPSDRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I ++AK   ++ V V + S +   S   +   + +  DR  A+  +L  H  
Sbjct: 184 FSATYPTQIASIAKRIMRNPVEVKVESNHDNSSISQHFYKVESNDDRLRAVRLLLSQHRP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ ++FC+T+      +  L ++ F  +AL G+L Q+ER   L +  +    + +ATDVA
Sbjct: 244 ESCVIFCNTKREAQEISDDLEDYGFSSIALHGDLEQRERDRTLVLFANKSRSILVATDVA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L+ VI+  L+ + E  +HR GRTGRAG KG++  +       +   L    +
Sbjct: 304 ARGLDIDNLDAVINYHLARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLD 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +  E  P         A+ +L  P F
Sbjct: 364 RPISGEALP---------AEHLLDQPTF 382



 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGV 518
                   +  G KQK     ++  L   +GI    +G I V     +V    EV+   +
Sbjct: 383 RPEMVTLMIDGGKKQKVRPGDILGALTGENGIAGSDVGKINVFDFCAYVAVKREVARAAL 442

Query: 519 DLLRRTVKLDKGIQLKYL 536
             L       +  + + L
Sbjct: 443 KKLENGRIKGRNFRSRQL 460


>gi|261207791|ref|ZP_05922476.1| helicase [Enterococcus faecium TC 6]
 gi|289566243|ref|ZP_06446675.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|294616582|ref|ZP_06696358.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
 gi|260078174|gb|EEW65880.1| helicase [Enterococcus faecium TC 6]
 gi|289161950|gb|EFD09818.1| ATP-dependent RNA helicase YqfR [Enterococcus faecium D344SRF]
 gi|291590532|gb|EFF22265.1| ATP-dependent RNA helicase DbpA [Enterococcus faecium E1636]
          Length = 449

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 186/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       I E L+ +G+   T VQE ++    + K+++  +QTG+GKT  F L L
Sbjct: 1   MNNFDIFRFKPFINEVLTAKGFKQPTEVQERLIPLIAKGKNIIGQSQTGTGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVH 115
              + AE +          +  AP+RELA Q+      +   +   + V           
Sbjct: 61  FEKINAEKEEV------QVVITAPSRELAAQIYEAATQIAKFSTPEIRVSNFVGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  R       +VVGTPGR+ D +  + L I    A V+DEAD  LD+GF ++++ I   
Sbjct: 115 QLNRLHHQQPQVVVGTPGRILDMMNEQALKIHTAFAFVVDEADMTLDMGFLNEVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K + L+FSATI   +    + Y ++ +   I  +     DI+   +     D +  I
Sbjct: 175 LPEKLQFLVFSATIPEKLRPFLRKYMENPIIEEIKPKAVISEDIENWLISTKGKDENQMI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AIVF +T+  V      L     +V  + G+++ +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIVFANTKQHVDEIADYLKNQGLKVAKIHGDITPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+AE+  + +  +HR GRTGR G KG ++ +   N ++ 
Sbjct: 295 QYVVATDLAARGIDIEGVSHVINAEIPEDLDFFIHRVGRTGRNGLKGTAITLYSPNDEQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
            + + +   VS   +   + E ++  D  R
Sbjct: 355 IDAIEK-LGVSFEPKEIKNGEIVKTYDRNR 383


>gi|225858570|ref|YP_002740080.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|225721139|gb|ACO16993.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           70585]
 gi|301793920|emb|CBW36316.1| putative helicase [Streptococcus pneumoniae INV104]
          Length = 447

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|322516110|ref|ZP_08069045.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
 gi|322125405|gb|EFX96755.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           vestibularis ATCC 49124]
          Length = 447

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 196/467 (41%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I +AL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKAYIQKALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  ++           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPKSGDV------QVVITAPSRELATQIYQATKQIAKHSETEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D ++   L I      V+DEAD  +D GF D ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDTGFLDTVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVFKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|302769696|ref|XP_002968267.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
 gi|300163911|gb|EFJ30521.1| hypothetical protein SELMODRAFT_10677 [Selaginella moellendorffii]
          Length = 614

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 210/421 (49%), Gaps = 9/421 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +AL++RG VNL  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +  E 
Sbjct: 11  IDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREK 70

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F PA  P A+ +APTRELA QV  EL        VV     GGVS+  +RR L + 
Sbjct: 71  SSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVC--IYGGVSIEGQRRQLASS 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D +    L ++ +K  +LDEAD+ML +GF +++E I+   P +R  ++
Sbjct: 129 VEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTML 188

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   I  L   Y K+   ++      +        Y      L+        +  Y
Sbjct: 189 FSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVY 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF  T+        V++  +    AL G++SQ +R   L   RDGR  V +AT
Sbjct: 249 AKGGKAIVFTKTKRDTDDVAAVMSRSIGC-EALHGDISQYQREKTLSGFRDGRFNVLVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++L++H E+  + E  +HRSGRTGRAG+KG  + +   N +R    +  
Sbjct: 308 DVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIES 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAAGF 420
           E          P+ E +    +    +    +   +          LL +     +AA  
Sbjct: 368 EVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEEQGVTALAAAM 427

Query: 421 L 421
            
Sbjct: 428 A 428


>gi|289671300|ref|ZP_06492375.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 458

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      R 
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARV 353

Query: 357 ERLFREANVSVVWEPAP 373
           + L       + W  AP
Sbjct: 354 QALEAAQGQPLKWSRAP 370



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPHAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|228477005|ref|ZP_04061643.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
 gi|228251024|gb|EEK10195.1| ATP-dependent RNA helicase [Streptococcus salivarius SK126]
          Length = 447

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 197/467 (42%), Gaps = 29/467 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I EAL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKTFIQEALDEIKFKEPTPVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L  ++           +  AP+RELA Q+ +  + +   +   + V           + 
Sbjct: 62  KLNPKSGDV------QVVITAPSRELATQIYQATKQIAKHSDTEIRVVNYVGGTDKQRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S P
Sbjct: 116 EKLKVAQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTMDMGFLDTVDKIAASLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ ++L+FSATI   +    K Y  + V   I +       ID   V     +++  I+ 
Sbjct: 176 KEVQILVFSATIPQKLQPFLKKYLTNPVMEQIKTSTVIADTIDNWLVSTKGRNKNEQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A++F +T+         L  +  +V  + G +  +ER   +  ++      
Sbjct: 236 MLKGMQPYLAMIFVNTKERADDLHSYLVSNGLKVAKIHGGIPPRERKRIMNQVKKLDFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + +EP             ++ +D  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---MGITFEP-------------KVYKDGEFQDTYDRDRRANREKAYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
              L   +     P     +       R R+   A +  G +    K
Sbjct: 400 ---LVKKKKKKIKPGYKKKIQWKVDEKRKRERRAANRAKGRAERKAK 443


>gi|226246544|ref|NP_001139665.1| vasa protein [Strongylocentrotus purpuratus]
 gi|223056284|gb|ACM80369.1| vasa [Strongylocentrotus purpuratus]
          Length = 766

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 189/383 (49%), Gaps = 14/383 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE   + + +   + +  Y   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 312 IRAFEEAELDETVLSNVRKAHYAKPTPVQKYGMPIISCGRDLMACAQTGSGKTAAFLLPI 371

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++      S  +    PLAL ++PTRELA+Q+  E       T +   V  GG SV 
Sbjct: 372 ITNMITHGGCISTFNVIQEPLALIVSPTRELAIQIYNEARKFCRGTTIRPVVVYGGTSVS 431

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----EF 171
            + R+ Q G  I+V TPGR+ D +    + +  LK ++LDEAD MLD+GF  DI    E 
Sbjct: 432 HQMRECQKGCSILVATPGRMHDFVTRGYIGLGKLKFLILDEADRMLDMGFGPDIQRLIEH 491

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSD 230
               +   R+ LMFSAT    +   A  Y  D + + +       SDI+ R   +     
Sbjct: 492 PHMPAKGDRQTLMFSATFPNEVQEKAGEYLNDYLFLTVGRVGGAASDIEQRVFSVGQFDK 551

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           RD  +  +         +VF ST+ +      +L++  F   ++ G+  QQER  AL+  
Sbjct: 552 RDKLMEILRDQKDDDRTLVFVSTKRNADFLASLLSQSEFPTTSIHGDRQQQEREEALRDF 611

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           + G+A + +AT VAARG+D+P ++ V++ +L S+ +  +HR GRTGR G  G S      
Sbjct: 612 KTGKAPILVATSVAARGLDIPGVKHVVNYDLPSDIDEYVHRIGRTGRVGNLGRSTSFYDA 671

Query: 349 --PQNMQRRAERLFREANVSVVW 369
               N+ R   ++  +A   V  
Sbjct: 672 EKDANIARALIKILADAQQEVPE 694


>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
 gi|74664187|sp|Q8SRB2|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
 gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
           [Encephalitozoon cuniculi GB-M1]
          Length = 495

 Score =  180 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 179/375 (47%), Gaps = 8/375 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE       +  +L E+G+   T++Q       L  +D++  AQTGSGKT++F L  
Sbjct: 86  IQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPA 145

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +         P+ L +APTREL +Q+ + ++       +      GG S   + 
Sbjct: 146 LVHAKDQQP-LRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQI 204

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L  GA +V+ TPGRL D        +S +  +VLDEAD MLD+GF   +  I+  +  
Sbjct: 205 RALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNA 264

Query: 179 KRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +         +    V    E + +S I     + +  ++++ ++ 
Sbjct: 265 NRQTLMWSATWPREVRGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIG 324

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        IVFC+ + +      VL    +   AL G+ SQ  R   L   R GR  +
Sbjct: 325 VLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPI 384

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQ--- 353
            IAT+VA RG+D+ D++LVI+ +   + E+ +HR GRT R   ++G+S        +   
Sbjct: 385 LIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANA 444

Query: 354 RRAERLFREANVSVV 368
           R   R+ REAN +V 
Sbjct: 445 RELIRMLREANQTVP 459


>gi|146300600|ref|YP_001195191.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146155018|gb|ABQ05872.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 444

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 123/427 (28%), Positives = 209/427 (48%), Gaps = 13/427 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLAL 58
           K F  +   + I +ALSE   V  T +Q+  +   L E  DV+  A+TG+GKT AFGL L
Sbjct: 3   KQFSTLGISEPILKALSELNIVEPTEIQQKTIPLLLAENHDVVGLAKTGTGKTAAFGLPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRE 117
              +       + +SA  A+ + PTREL  Q+ R LE        + +A   GG+ +  +
Sbjct: 63  LQLID------TKSSAVQAVILVPTRELGHQIFRNLEDFSKYIPNISIAATCGGIPIKPQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+   HI+V TPGRL D I+ K +++   + +VLDEADEM+ +      E + +   
Sbjct: 117 IERLKTPTHIIVATPGRLIDLIQRKAVDLKQTQYLVLDEADEMVSILKESLDEILTEIPK 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R +L  +         +     K+ V+V+ + E   +  ID++ ++V   ++ + +++
Sbjct: 177 KHRTLLFSATLPGTIKQLVQNYLNKNVVQVSASMEVVGNQGIDHQYIVVDPIEKLDVLMH 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  I+FC T+A+V++  K LA + F   A+ G L+Q  R   ++  R+G   +
Sbjct: 237 FLNSREGERGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQGIRDRIMEQFREGHINI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ ++  V++  L    E  +HRSGRT RAG  G+S+ V+ +       
Sbjct: 297 LVATDLAARGIDVKEISYVVNYHLPDAYETYVHRSGRTARAGANGLSLTVLQEEEVFEIA 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              RE  ++      PS  +I E +     + +        I  D K  V  +      +
Sbjct: 357 DFERELGLTFSKFQKPSALSIEENNTLLWAKQIFKTKPNHDISTDLKTKVKTVFHHLTKD 416

Query: 415 KIAAGFL 421
           ++    +
Sbjct: 417 ELIEKLM 423


>gi|239613981|gb|EEQ90968.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ER-3]
 gi|327353332|gb|EGE82189.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 810

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 181/397 (45%), Gaps = 10/397 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +     LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L   
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+  L
Sbjct: 111 LY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERL 168

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK+R+
Sbjct: 169 GRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQ 228

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT +  ++          + + V+  + +   + +    ++  L ++ + + + +
Sbjct: 229 TMLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFI 288

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRARV 297
           R       +VF S+   V    +        +  L     Q++ +           +   
Sbjct: 289 RSSLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAKHAC 348

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             +TD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + +    
Sbjct: 349 LFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAGML 408

Query: 358 RLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLF 392
           +   +  + +      S +   I+ +      +DP  
Sbjct: 409 KRLEQKKIPIEKINIRSKKQQSIKNQLQNMCFKDPAL 445


>gi|320176023|gb|EFW51092.1| ATP-dependent RNA helicase RhlB [Shigella dysenteriae CDC 74-1112]
          Length = 421

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E L ++G+ + T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVEVLEKKGFHDCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|289705155|ref|ZP_06501559.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
 gi|289558183|gb|EFD51470.1| ATP-dependent RNA helicase DeaD family protein [Micrococcus luteus
           SK58]
          Length = 470

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/430 (31%), Positives = 209/430 (48%), Gaps = 22/430 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +      I EAL  +G V+   +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 37  QTFADFGVHPKIVEALEAKGIVHPFPIQAMTLPVALGGHDIIGQAKTGTGKTLGFGIPAL 96

Query: 60  STLLAENDR-------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
              +   +           A AP AL +APTRELAVQV  +L    A+  + +A   GG 
Sbjct: 97  QRAIGPGEPGWDALEAKGTAGAPQALIVAPTRELAVQVAGDLTAAAARRPLRIATIYGGR 156

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +   +  +LQ G  IVVGTPGRL D +R + L +  +  VVLDEADEMLDLGF  D+E +
Sbjct: 157 AYEPQIEELQRGIEIVVGTPGRLIDLMRQRHLRLDLVNTVVLDEADEMLDLGFLPDVETL 216

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALS 229
           L + P  R+ ++FSAT+   +  +A+ Y      +  A          DI          
Sbjct: 217 LAAVPAVRQTMLFSATMPGPVVAMARRYMTQPTHIRAADPEDEGLTKKDIRQLVYRAHHM 276

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+D  +   L+  G    I+F  T+ + +R    L    F   AL G+L Q  R  AL+ 
Sbjct: 277 DKDELVARALQAEGRGRTIIFTRTKRTAARVADELTARGFAAGALHGDLGQGAREQALRA 336

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+  + +ATDVAARGID+ D+  V + +   + +  +HR GRTGRAG KG++V ++ 
Sbjct: 337 FRNGKVDILVATDVAARGIDVDDVTHVFNFQAPEDEKTYVHRVGRTGRAGNKGVAVTLVD 396

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEA---------IRERDAQRILQDPLFLDSIQGDE 400
                R   + +   +    EP  +  +         I +    R+ Q    L+ ++G+ 
Sbjct: 397 WEDMPRWSLIDKALGLG-QPEPVETYSSSPHLFSDLGIPKGTKGRLPQAKRVLEGLEGEV 455

Query: 401 KKMVDVLLAK 410
            + +    AK
Sbjct: 456 LEDLGGPEAK 465


>gi|327472726|gb|EGF18153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK408]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E +      +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEEAE------SVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSWEKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|324994094|gb|EGC26008.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK678]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QILDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|167840691|ref|ZP_02467375.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis MSMB43]
          Length = 458

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 203/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 3   FSTLPLTPATLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 63  LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 117 LEHGAHIIVGTPGRIMDHLDRGTLTLGALNTLVLDEADRMLDMGFFDDIAKVARQCPPAR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L 
Sbjct: 177 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLDERHDDSKIRQRFYEVTEDERLHAVGLLLN 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 236 HYRPVSTIAFCNTKQQCRDLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 296 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIE 355

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 356 QAQKRDVEWHPLAELKA----DRNEPLLPPMETLQILGGRKDKIR 396



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
               +           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 371 KADRNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 430

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 431 RGIARDALRKLNAGKIKGKRVKVRLMD 457


>gi|111024197|ref|YP_707169.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823727|gb|ABG99011.1| possible ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 632

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 145/558 (25%), Positives = 226/558 (40%), Gaps = 28/558 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL+       + +Q   +   L   +VL  AQTGSGKT+AFGL + + L    
Sbjct: 33  LPAPLVQALARNSITVPSPIQALAVPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSRHE 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 93  DRPAPKR-PRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFSKQVDQLRRGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +    + L+FS
Sbjct: 152 ILVATPGRLNDHLRQGTCILDSIEITALDEADQMADMGFLPEVRAILGETRADGQRLLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + +L + +  D V+ +          +++  +LV    +DN  V          
Sbjct: 212 ATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDN--VLAEIGARDGR 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T  L        AL G  +Q +R+  L+  ++GR  V +ATDVAAR
Sbjct: 270 TIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R   RL   A V 
Sbjct: 330 GIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAGVD 389

Query: 367 VVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
               P  P  E +      +        D+    E+   D       P +      R   
Sbjct: 390 ATAVPVTPGSEKLASITGAKAPSGEPVRDTYSRGER-GGDRKFGDRGPRREGGYAGRDGG 448

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                  +       S  DR          G         S  +      +         
Sbjct: 449 GYRGNRNDRGDRGERSFGDRPSGGRSFEGRGPRRDQTDNRSGGYRGDRPQRDG------- 501

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
                  G  R        + + TF        D   R    D   + +Y GG     R 
Sbjct: 502 ---DNRGGGYRGD------RDNRTF-------TDRAPRRDFGDSAPRREYGGGTTAPRRD 545

Query: 546 YKSSGFKSKNSQDGATKR 563
           +   G   + + + +  R
Sbjct: 546 FGDRGDSHRGTGERSFDR 563


>gi|325695201|gb|EGD37102.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK150]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QILDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKTRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTTQGLKVTKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|21243124|ref|NP_642706.1| ATP-dependent RNA helicase DbpA [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21108643|gb|AAM37242.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 458

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 132/410 (32%), Positives = 200/410 (48%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAHSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQKLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT   +I TLA+   K+ V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDSIRTLARELLKEPVEITVEGADSAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      RA
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E    + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALETEQGQPLKWSRAPLATA-RPAQLPQAAMTTLRIDGGKTDKLRAGDI 402



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPQAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|167625028|ref|YP_001675322.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355050|gb|ABZ77663.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 437

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 191/364 (52%), Gaps = 2/364 (0%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           ++++GY   T++Q   +   L  +D++ SAQTG+GKT AF L L   L+ ++     + A
Sbjct: 40  VAQKGYQQPTAIQAEAIPAILAGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKA 99

Query: 75  PLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             A  L +APTRELAVQV   +      T V   V  GGVS+  +   L  G  ++V TP
Sbjct: 100 KRASVLVLAPTRELAVQVNTNVSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATP 159

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL DH+R   LN+S ++ +V DEAD MLD+GF D+I  IL   P KR+ L+FSAT S A
Sbjct: 160 GRLLDHVRRGTLNLSDIEYLVFDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSA 219

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  L+K   +  +R+ +   N   + I+     V    +   + +++     +  +VF  
Sbjct: 220 IFELSKKLLQKPLRIEVDKANSAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSR 279

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            + +     + +     +  A  G+L Q  R   L   + G+ +  +ATDVAARG+D+ +
Sbjct: 280 KKQTADLIAQKMLAAGIEAKAFHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVE 339

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           L++V++ E+    E+ +HR GRTGRAG  G ++ +  ++     E +    +  +  +  
Sbjct: 340 LKVVVNYEIPFVAEDYVHRIGRTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQWL 399

Query: 373 PSVE 376
              E
Sbjct: 400 EGFE 403


>gi|119946353|ref|YP_944033.1| ATP-dependent RNA helicase DbpA [Psychromonas ingrahamii 37]
 gi|119864957|gb|ABM04434.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 462

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 209/405 (51%), Gaps = 13/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L  KDV+   +TGSGKT AFGL L   
Sbjct: 6   FSTLPLHTDLLHNLESLGYHVMTPIQAQSLPHVLAGKDVIAQGKTGSGKTAAFGLGLLEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L  +  R        +L + PTRELA QVG+EL  L      + V    GGV    +   
Sbjct: 66  LSVKRFRI------QSLILCPTRELADQVGKELRRLARTIHNIKVLTLCGGVPFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+R   L +  L+ +VLDEAD MLD+GF+  I+ I+D +PKKR
Sbjct: 120 LEHGAHIIVGTPGRIEDHLRKGTLRLDDLEVLVLDEADRMLDMGFQASIDAIIDQAPKKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  +AK    D + V   S++       +   +    DR  A+  +L+
Sbjct: 180 QTLLFSATFPEKINNIAKRIMTDPIMVKAESKHDDSVIAQHFYKVENSQDRMIALRLLLQ 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  ++++VFC+T+  V      LA   F  +AL G+L Q++R  AL    +  A + +A
Sbjct: 240 KYQPESSVVFCNTKKEVQEVADELANRGFSALALHGDLEQKDRDQALIRFANKSASILVA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L  V +  ++ + E  +HR GRTGRAG KG++          +   L 
Sbjct: 300 TDVAARGLDIDNLSAVFNYHIAHDQELHVHRIGRTGRAGNKGLAFSFYSDKEHHKVSVLE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              + S+  E  P +  + +       Q  +    I G +++ + 
Sbjct: 360 DYLDRSISPEQLPLLNLLDKEPQ----QSNMITIRIDGGKRQKIR 400



 Score = 61.9 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                       +  G +QK     ++  L   +GI+   +G I V  + +++ V  D +
Sbjct: 379 KEPQQSNMITIRIDGGKRQKIRPGDIVGALTGENGISGDQVGKIHVSDNWSYIAVQRDVI 438

Query: 519 DLLRRTVKLDK 529
            +  + +   K
Sbjct: 439 KVAFKKLSEGK 449


>gi|331234891|ref|XP_003330106.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309096|gb|EFP85687.1| ATP-dependent RNA helicase DED1 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 660

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 193/389 (49%), Gaps = 24/389 (6%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  +   +   +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S 
Sbjct: 177 FSNSPLDPHLLANIKLARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPIISA 236

Query: 62  -----------LLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
                      + A+N R         P AL +APTREL  Q+  E      ++ V  AV
Sbjct: 237 AFAKGPLPTSGMQAQNPRGGYGKRKAFPTALILAPTRELVSQIHDEARKFTYRSWVRPAV 296

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  ++ + R +++G  ++  TPGRL D I    +++S+++ +VLDEAD MLD+GF  
Sbjct: 297 VYGGADMNTQLRQIESGCDLLSATPGRLVDFIERGRISLSNIRFLVLDEADRMLDMGFEP 356

Query: 168 DIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I          +R+ LMFSAT    I  LAK++ KD + +++        +I  + 
Sbjct: 357 QIRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQKI 416

Query: 224 VLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V  +D+ + ++++L         +VF  T+         L +  F   ++ G+ SQ+E
Sbjct: 417 EYVEDADKRSVLLDVLSSMPTGGLTLVFVETKRMADMLENFLIQSNFAATSIHGDRSQRE 476

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+  R  R  V +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G
Sbjct: 477 RERALETFRSSRTPVMVATAVAARGLDIPNVTHVVNYDLPNDIDDYVHRIGRTGRAGNTG 536

Query: 343 MSVFVIPQNMQ---RRAERLFREANVSVV 368
           +S     +N +   R    L REAN  + 
Sbjct: 537 ISTAFFNRNNKNIVRELIDLLREANQEIP 565


>gi|291239420|ref|XP_002739621.1| PREDICTED: Rs1-like [Saccoglossus kowalevskii]
          Length = 563

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 185/372 (49%), Gaps = 7/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  KD+   A TG+GKT AF L +   LL +
Sbjct: 2   NLSRPLLKAINAMNFVHPTPIQVATIPVALLGKDICACAATGTGKTAAFMLPVLERLLYK 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   A+    L + PTREL +QV      L   T +   + +GG+ V  +   L+ G 
Sbjct: 62  PKQ---AAVTRVLVLVPTRELGIQVHSVTRQLAQFTEIDSCLAVGGLDVKLQEAVLRQGP 118

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DH+      ++S+++ ++LDEAD MLD  F + ++ I+      R+ ++
Sbjct: 119 DIVIATPGRLIDHLHNAPSFSLSNIEILILDEADRMLDEYFEEQMKEIIRMCSITRQTML 178

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  L     K+ VR+ I        ++    + +  +    R+     +   
Sbjct: 179 FSATMTDEVKDLVAVSLKNPVRLFINENTDVAYNLRQEFIRIRENREGDREAIAAALCSR 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + IVF  T+    R   +L      V  L G LSQ +R   L+  ++    + +AT
Sbjct: 239 TFHDHVIVFVQTKKQCHRLHIILGMLGLNVGELHGNLSQTQRLETLRRFKESNIDIMLAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  ++ +I+  + +  ++ +HR GRT RAG+ G SV +  +  ++  + + +
Sbjct: 299 DLAARGLDIEGIKTIINFTMPNTVKHYVHRVGRTARAGKSGRSVSLCGEKERKMLKEIVK 358

Query: 362 EANVSVVWEPAP 373
            A   V     P
Sbjct: 359 RARNPVKSRVVP 370


>gi|227937255|gb|ACP43273.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Gorilla gorilla]
          Length = 660

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 189/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 236

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 296

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 297 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 356

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 357 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++          +VF  T+         L    +   ++ G+ SQ+
Sbjct: 417 VVWVEDLDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 537 GLATSFFNEKNMNITKDLLDLLVEAKQEVP 566


>gi|170044624|ref|XP_001849941.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
 gi|167867695|gb|EDS31078.1| ATP-dependent RNA helicase DRS1 [Culex quinquefasciatus]
          Length = 807

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 221/456 (48%), Gaps = 24/456 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   GY+  T +Q A +   L  +DV   A TG+GKT A+ L     LL +
Sbjct: 192 NLSRPLMKAIGFLGYIYPTPIQAATIPIALMGRDVCGCAATGTGKTAAYMLPTLERLLYK 251

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 252 PSAAQAVT--RVLVLVPTRELGAQVYQVTKQLTQYTSIEVGIAIGGLDVKAQEAVLRTNP 309

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S  K R+ ++
Sbjct: 310 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKSRQTML 369

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA       V+V + +      ++    + +  S    R+  +  ++  
Sbjct: 370 FSATMTDQVKDLAAVSLSKPVKVFVNNNQTVAFNLRQEFIRIRESRDADREPILAALICR 429

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  V +AT
Sbjct: 430 TFHDHCMVFVQTKKTAHRLRILLGLLGVKAGELHGDLTQSQRLESLKQFKDEQIDVLVAT 489

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  E+ +HR GRT RAG+ G+SV +  +  ++  + + +
Sbjct: 490 DVAARGLDISGVKTVINFVMPATMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKDIIK 549

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A   V     P+   I E+          +   +Q  E+++ +VL  +H     A   L
Sbjct: 550 NAVNPVKNRIIPN--EIVEK----------YRKKVQALEEEIENVLQEEH-----AEKLL 592

Query: 422 RIHRAGLCAPE-EITPVSLVSGRDRFRDDSRAFKVG 456
           R     L   E ++  +S    R+ F++     +  
Sbjct: 593 RQTEQQLSKTENKLKGISNGPSREWFQNSHERHQEK 628


>gi|328945053|gb|EGG39209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1087]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|289665687|ref|ZP_06487268.1| ATP-dependent RNA helicase DbpA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 458

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P    +   +   GY  LT +Q   L P L+  DV+  A TGSGKT AFGL L
Sbjct: 1   MNEFSALPLSPALAPGIDALGYTVLTPIQAQSLPPILQGLDVIAQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG++L  L      +  V + G      +
Sbjct: 61  LQQLDPALTRA------QALVLCPTRELADQVGKQLRKLATGIPNMKLVVLTGGMPLGPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRALHLGGVRTLVLDEADRMLDMGFEEPIREIASRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I TLA+   KD V + +   +           +     R  A+ 
Sbjct: 175 DKHRQSLLFSATFPDIIRTLAREILKDPVEITVEGADNAPEIDQQFFEVDPT-YRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L E  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFNPESSVVFCNTRKEVDEVAGSLQEFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++      R 
Sbjct: 294 VLVASDVAARGLDVEDLSAVVNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRETARV 353

Query: 357 ERLFREANVSVVWEPAP 373
           + L       + W  AP
Sbjct: 354 QALEAAQGQPLKWSRAP 370



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
               ++      +   +  G   K  A  ++  L   +G++  +IG I + P  ++V ++
Sbjct: 373 TARPAQLPHAAMTTLRIDGGKTDKLRAGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIA 432

Query: 515 ADGV 518
              V
Sbjct: 433 RAQV 436


>gi|157876834|ref|XP_001686759.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129834|emb|CAJ09140.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 527

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 228/479 (47%), Gaps = 28/479 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   Q +  A ++ G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCQELCAACADAGWQHPTRIQASTITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LLA+            L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLAQRK----TPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H+VVGTPGR+ DH+       +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMNYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K   +D V + +  +N     +    +    +   + +   
Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEP-APSVE-----------------AIRERDAQRILQ-DPLFLDSIQGD 399
           + ++  V  V  P  P  E                  IRE   +R L+ +   L + +  
Sbjct: 409 IEQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKG 468

Query: 400 EKKMVDVLLAKHDPEKIAAGF--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           ++   D  +   D +   + F  LR+ R      E        S   + R+  R  K  
Sbjct: 469 KRDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTKKEQHKSLWAKRREAKRQAKSR 527


>gi|300783470|ref|YP_003763761.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792984|gb|ADJ43359.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 134/458 (29%), Positives = 205/458 (44%), Gaps = 19/458 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P  +  AL+ +G      +Q A L   L  +DVL   +TGSGKT  F L L
Sbjct: 1   MSTFAELGLPTPLVAALATQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A   R  P   P AL +APTRELA Q+   +  L    G+      GGVS + + 
Sbjct: 61  LARLAAGPTRRKPGR-PRALILAPTRELATQIEASILPLAKPLGLKTTTIFGGVSANPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  IVV  PGRL DH+R   + +  ++  VLDEAD M DLGF  ++  I+D +P 
Sbjct: 120 TRLRDGVDIVVACPGRLADHMRSGHVKLDAIEITVLDEADHMADLGFLPEVRRIMDQTPS 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L K +  D +  ++ S     S +++  + +  + R   +V+ 
Sbjct: 180 RGQRMLFSATLDNGVDVLVKRFMNDPITHSVDSAQSPVSTMEHHVLHLEETHRLPVLVD- 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    +VF  T++     T+ L       V L G L Q  R+  L+    G A+  
Sbjct: 239 -LTAAPGRTLVFTRTKSRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++     R    
Sbjct: 298 VATDIAARGIHVDDVRLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDAQVRDVRD 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           L R+A +       P+   +              L  +   E+         + P+K++A
Sbjct: 358 LTRKAGIK------PTTTQLGPGHP--------LLAELAPGERTFSKAPAVDNRPKKVSA 403

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
                   G              G  R R + +  +  
Sbjct: 404 TGAAPGGGGRGRRGAPATPKENRGGQRSRANGQPRRDE 441


>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
          Length = 851

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 183/375 (48%), Gaps = 12/375 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   + +  Y   T VQ+  +      +D++  AQTGSGKT AF L + S +L +
Sbjct: 420 NLNETVRNNVMKAKYEKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIISGILRD 479

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  S    P  + ++PTRELA+Q+  E       T +   V  GG SV  +  D+ 
Sbjct: 480 GVQSGSLSFVQTPQCIIVSPTRELAIQIFNEARKFSHNTILRPVVIYGGTSVQYQTNDVG 539

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK--- 179
            G HI+VGTPGRL D I  + +++     +VLDEAD MLD+GF   +E ++++       
Sbjct: 540 KGCHILVGTPGRLQDFIDRQKISVEKCNYLVLDEADRMLDMGFGPAMERLVNNPNMPKKG 599

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
            R+ LMFSAT    +   A  Y  + + + I        D++ R + +     +D  I  
Sbjct: 600 DRQTLMFSATFPDEVQKRASEYLNNYLFLTIGRIGGATPDVEQRVIEVDQFQKKDKLIEI 659

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +         +VF  T+ S      +L++  F   ++ G+  Q+ER  AL+  + GRA V
Sbjct: 660 LHDSPEDDKTLVFVETKRSADFLASLLSQSGFPTTSIHGDRMQKEREEALRDFKTGRAPV 719

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ----NMQ 353
            +AT VAARG+D+P ++ VI+ +L  +    +HR GRTGR G  G +          N+ 
Sbjct: 720 MVATSVAARGLDIPKVKHVINYDLPEDISEYVHRIGRTGRVGNLGKATSFFDSSKNGNVA 779

Query: 354 RRAERLFREANVSVV 368
           R   +   +A   V 
Sbjct: 780 RALIKTLADAQQEVP 794


>gi|74691634|sp|Q74Z73|HAS1_ASHGO RecName: Full=ATP-dependent RNA helicase HAS1
          Length = 504

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 210/458 (45%), Gaps = 15/458 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+ + G+  +T VQ   + P +  +DVL +A+TGSGKT+AF L     L   
Sbjct: 45  NLSSQTLKAIGKMGFTKMTQVQARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEML--H 102

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +    + I PTRELA+Q+      L         + IGG +  +E   L  G 
Sbjct: 103 SLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGV 162

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D+++ I+   P + R  M
Sbjct: 163 NLLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDEMKQIIKILPNEDRQSM 222

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E      ++   V+     R   +   L+
Sbjct: 223 LFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYVVCDSDKRFLLLFTFLK 282

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +    + + 
Sbjct: 283 KFQNKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILVC 342

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ +I  +   +P + +HR GRT +  + KG S+  +  +      R 
Sbjct: 343 TDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAKGTKGKGKSLMFLTPHELGFL-RY 401

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            + A V +     P+ + A  +   +++L+    L+ I  D  +      A H  + +  
Sbjct: 402 LKAAKVPLNEYEFPANKIANVQSQLEKLLKTNYELNKIAKDGYRSYLQAYASHSLKTVYQ 461

Query: 419 ----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSR 451
                 +++ ++ G   P ++      SG+       R
Sbjct: 462 IDKLDLVKVAKSYGFPVPPKVNITIGASGKAPAAHKKR 499


>gi|312899136|ref|ZP_07758514.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
 gi|310619803|gb|EFQ03385.1| DEAD/DEAH box helicase [Megasphaera micronuciformis F0359]
          Length = 419

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 203/395 (51%), Gaps = 13/395 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + EAL+ +     T+VQE  +   L+  ++LV AQTG+GKT+AF L + 
Sbjct: 3   KTFASLGINASLVEALTNQHITEPTAVQEQAVPAALKGHNLLVQAQTGTGKTLAFLLPIF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  +       S   AL +APTREL+ Q+    +     TG+ +   IGG ++  + +
Sbjct: 63  QGIKKD------VSMTQALIMAPTRELSEQLATVADSFTPVTGLDILNLIGGKTIENQLQ 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +++GTPGRL DH R   L++S +  VV+DEAD+ML  GF  +++ ++  +PKK
Sbjct: 117 KLHRRPQVIIGTPGRLLDHCRRNSLDLSGVHYVVVDEADQMLQSGFLSEVDELIGMTPKK 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNI 238
           R++L FSATI   + +LAK +    + + +         +I+ R  +++   +   + ++
Sbjct: 177 RQLLFFSATIPDKVRSLAKKHMDRPLSLTVREGETVTLENIEQRIYMMSEDRKFEKLCDM 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       A+VFC+T+    +    L    F V  L G++SQ  R+  ++     + ++ 
Sbjct: 237 LTEFNPYLAVVFCNTKDRTKKLASDLIARGFNVAELQGDMSQGRRNQVMRDFAKAKTQIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +A+D+AARGID+  +  V   ++  + +  +HR GRTGRAG  G+SV       + +  R
Sbjct: 297 VASDIAARGIDIEGISHVFSYDVPGDTDYYIHRIGRTGRAGSSGLSVMFATGADEDKIRR 356

Query: 359 LFREANVSVVWE----PAPSVEAIRERDAQRILQD 389
           +      ++          +V A +    +R+ +D
Sbjct: 357 IEHTIQATITKYTANGKIKTVGANKVPKKKRVYKD 391


>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
          Length = 734

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 115/475 (24%), Positives = 215/475 (45%), Gaps = 22/475 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   ++  T +Q A +   L  +D+   A TG+GKT A+ L     L+ +
Sbjct: 161 NLSRPLLKAITTMNFLTPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLMYK 220

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                P   P     L + PTREL VQV +  + L   T V   + +GG+ V  +   L+
Sbjct: 221 -----PLDGPAVTRVLVLVPTRELGVQVYQVTKQLSQFTSVETGLSVGGLDVKVQESILR 275

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH+R        +   ++LDEAD MLD  F + +++I++   + R+
Sbjct: 276 RNPDIVIATPGRLIDHLRNTPTFSLDIIEVLILDEADRMLDEYFAEQMKYIVNQCSRSRQ 335

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNI 238
            ++FSAT++  +  LA       +++ + S      ++    + +       R+  +  +
Sbjct: 336 TMLFSATMTEEVKDLAAVSLDKPIKIFVDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 395

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + +VF  T+    R   +L     +V  L G L+Q +R   LQ  +D    + 
Sbjct: 396 ICRTFHDHVMVFVQTKKQAHRLHILLGLLGVKVGELHGNLTQPQRLENLQEFKDEIINIL 455

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   + 
Sbjct: 456 IATDVAARGLDISGVKTVINFVMPATLQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKE 515

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + + A   V     P    I E+  +++    + ++ I  +EK   ++   ++       
Sbjct: 516 VIKRAKNPVKNRIIPP--DIIEKYNKKLQSLEIDVEKILQEEKSERELAKIENQA----- 568

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                    L   EE    S    +   R +    ++     +  K      +++
Sbjct: 569 ---NRAENLLKDVEERNHRSWFQSKKERRMEKENLRLTERPTNKKKDREKEPINI 620


>gi|229368775|gb|ACQ63054.1| DEAD box polypeptide 18 (predicted) [Dasypus novemcinctus]
          Length = 670

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFTSLANLVNENTLKAIKEMGFTHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               +     +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIY--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PVRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKTNATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R++      + 
Sbjct: 415 LLFTFLKKNRKKKMMVFFSSCMSVKYHYELLNYIDLPVLAIHGRQKQNKRTSTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|316971006|gb|EFV54849.1| eukaryotic initiation factor 4A [Trichinella spiralis]
          Length = 465

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 200/389 (51%), Gaps = 17/389 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + + +   +   G+   + +Q+  + P  + +DV+  AQ+G+GKT  F + L
Sbjct: 84  VNSFEKMGLREELLRGVFAYGFEKPSVIQQLAIVPCCQRRDVIAQAQSGTGKTATFAIGL 143

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  + +         AL +APTRELA Q+ + +  L    GV V  CIGG SV   R
Sbjct: 144 LQQINTDFND------CQALVMAPTRELAQQIQKVILALGDHMGVKVLTCIGGTSVATNR 197

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G H+ VGTPGR+ D IRG  L    +K  VLDEADEML  GF+  I  + +  P 
Sbjct: 198 EKLGQGCHVAVGTPGRVLDMIRGHHLQTKGIKTFVLDEADEMLSRGFKQQIHEVFEFMPA 257

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
             ++++ SAT+   +  +   +  + VR+ +  E      I    + +     + + + +
Sbjct: 258 DVQVVLLSATMPDEVLQVTTKFMNNPVRILVRKEELTLDGIRQFYIEVGREEWKLDTLCD 317

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I        A++FC++R  V +  + L +  F V  + G+++QQ+R   +Q  R G +RV
Sbjct: 318 IYTTLSISKAVIFCNSRQKVEKLARELTDRKFTVTCMHGDMTQQDRDVIMQQFRTGSSRV 377

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHR-------SGRTGRAGRKGMSVFVIPQ 350
            I+TD+ ARGID+  + +VI+ ++  N EN +HR        GR+GR GR G+++  + +
Sbjct: 378 LISTDLLARGIDIQQVSIVINYDIPHNRENYIHRYEQPAVFIGRSGRFGRVGVAINFVTE 437

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIR 379
           N +R  + +    + ++   PA  +E +R
Sbjct: 438 NDKRMMKDIEEFYHTNIRQMPA-DIEKVR 465


>gi|224060117|ref|XP_002300045.1| predicted protein [Populus trichocarpa]
 gi|222847303|gb|EEE84850.1| predicted protein [Populus trichocarpa]
          Length = 791

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 112/377 (29%), Positives = 178/377 (47%), Gaps = 9/377 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE    P  I + +   G+   T +Q       L+ +D++  A+TGSGKT+ + +  
Sbjct: 164 LTSFETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPG 223

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +     P   P  L ++PTRELA Q+  E       +        GG     + 
Sbjct: 224 FIHL--KRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQL 281

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L  GA IVV TPGRL D +  + +++S +  +VLDEAD MLD+GF   I  I+   P 
Sbjct: 282 KELDRGADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 341

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ LM++AT    +  +A +       V +    E   +  I     L+A  ++   + 
Sbjct: 342 RRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRLE 401

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ILR   + + I+   +   +           F   A+ G+ SQ ER   L   R GR+ 
Sbjct: 402 QILRSQESGSKIIIFCSTKKMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLSQFRTGRSP 461

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++         + A
Sbjct: 462 ILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHA 521

Query: 357 ERLFRE---ANVSVVWE 370
             L +    AN  V  E
Sbjct: 522 SDLIKVLEGANQQVPPE 538


>gi|332366381|gb|EGJ44132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK355]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 199/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E  I   I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKIKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|321250272|ref|XP_003191751.1| ATP-dependent RNA helicase ded1 [Cryptococcus gattii WM276]
 gi|317458218|gb|ADV19964.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus gattii
           WM276]
          Length = 644

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 184/392 (46%), Gaps = 23/392 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N P   V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   +
Sbjct: 159 VTEFTNPPINPVLLENVKYARYTTPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPI 218

Query: 59  ASTLLAEND-------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S L                  R +    P AL +APTREL  Q+  E      ++ V  
Sbjct: 219 LSALFTYGPSAPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRP 278

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           AV  GG  +  + R L  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF
Sbjct: 279 AVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGF 338

Query: 166 RDDIEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I+D         R+ LMFSAT    I  LA+++ K+ + + +        +I  
Sbjct: 339 EPQIRRIVDEEDMPGVLDRQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQ 398

Query: 222 RAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R   V   D+ + ++++L         +VF  T+         L        ++ G+ +Q
Sbjct: 399 RVEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQ 458

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL   + GRA + +AT VAARG+D+P++  VI  +L ++     HR GRTGRAG 
Sbjct: 459 REREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGN 518

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVVW 369
            G S     +   N+ +    L +EAN  V  
Sbjct: 519 VGTSTAFFNRGNSNIGKDLIELLKEANQEVPQ 550


>gi|302833407|ref|XP_002948267.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
 gi|300266487|gb|EFJ50674.1| hypothetical protein VOLCADRAFT_31305 [Volvox carteri f.
           nagariensis]
          Length = 410

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 128/410 (31%), Positives = 211/410 (51%), Gaps = 17/410 (4%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE +     + EA +  G+ + +++QE  +   L+ +DV+  AQTGSGKT AF L +   
Sbjct: 1   FEKLGICTQLAEAAAGLGWKSPSNIQEQAIPHLLQGQDVIGLAQTGSGKTGAFSLPILQA 60

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+             AL ++PTRELA+Q+  ++E L +  GV  AV +GG+ +  +   L
Sbjct: 61  LMERPQEH------FALILSPTRELAIQIAEQVEALGSGIGVKCAVLVGGIDMMAQAIAL 114

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               HI+VGTPGR+ DH+      N+  LK +VLDEAD++LD+ F  +I+ IL   P+ R
Sbjct: 115 AKRPHILVGTPGRVVDHLSNTKGFNLKQLKHLVLDEADKLLDMDFEQEIDQILKVIPRDR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R  +FSAT++  +  L +      V+V +A++      +  + V +    +D  +  +L 
Sbjct: 175 RTQLFSATMTNKVQKLQRACLVRPVKVEVAAKYSTVETLRQQYVFIPAKYKDCYLAYVLN 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T  S  R   +L    F  V + G +SQ +R  AL   + G   +  A
Sbjct: 235 ELSGSTFMIFTRTCESTRRIALMLRNLGFGAVPIHGHMSQPKRLGALNKFKAGERSILAA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+D+P +++VI+ +   N ++ +HR GRT RAGR G SV ++ Q      +++ 
Sbjct: 295 TDVASRGLDIPSVDVVINYD---NSKDYIHRVGRTARAGRSGRSVTIVTQYDVELFQKIE 351

Query: 361 REANVSVVWEPAPSVEAIRER----DAQRILQDPLF-LDSIQGDEKKMVD 405
               V +    A   E +       DAQR+    +   D+ +  ++K  D
Sbjct: 352 HLTGVKMEQFQAEREEVLLLLERVSDAQRLAAMQMKEADAGKKGKRKGED 401


>gi|194398476|ref|YP_002037408.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
 gi|194358143|gb|ACF56591.1| ATP-dependent RNA helicase, DEAD/DEAH box helicase [Streptococcus
           pneumoniae G54]
          Length = 447

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 200/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V              + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARXIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLEIVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|162606504|ref|XP_001713282.1| DEAD box protein [Guillardia theta]
 gi|12580748|emb|CAC27066.1| DEAD box protein [Guillardia theta]
          Length = 386

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 181/364 (49%), Gaps = 7/364 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I       G+   T VQ   +   L  KD+LV +QTGSGKT+A+ L L   LL + 
Sbjct: 9   ICKQISRVCEAVGFKKATKVQVYTIPHFLIGKDLLVYSQTGSGKTLAYILPLLQKLLYKK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           + + P      + I P+REL  Q+    E +     + +A   GG+  + +   + +   
Sbjct: 69  NNYLP------IIIVPSRELVFQISTTFETISCVFNIRIASLTGGIDPNVQLVMISSNPD 122

Query: 127 IVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL +     K L I     +VLDEAD+++   F+ +I  I   + K +++++F
Sbjct: 123 IIISTPGRLVEILKLTKNLEIKFCTDLVLDEADKLIHSDFKREINIINSKTNKNKKLMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  +  +      + VR+ I        ++    +      ++  ++ ++     +
Sbjct: 183 SATMSLGLEKIKFFKISNPVRIIINQNFFISPNLIQNYIFCPFRYKEIYLLYLINEFYEE 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I F  T+    + + +L +  F    + G LSQ ER + L    +G+ ++ +ATD+A+
Sbjct: 243 KLICFVETQKMTEKISILLKKFSFDCYIIHGSLSQNERIDTLSKFTNGKKKILVATDLAS 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  + L+I+ +     ++ +HR+GRTGRAGR G ++ +I Q   R  +++    N+
Sbjct: 303 RGLDICAVSLIINYDFPIYLKDYIHRTGRTGRAGRAGRAISLITQYDLRTFQKIESILNI 362

Query: 366 SVVW 369
            +  
Sbjct: 363 KIAE 366


>gi|316968374|gb|EFV52655.1| eukaryotic initiation factor 4A-III [Trichinella spiralis]
          Length = 970

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 185/382 (48%), Gaps = 18/382 (4%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + +   +   G+   + +Q+  + P +  +DV+  +Q+G+GKT  F + L  
Sbjct: 41  TFEEMNLKRELLRGIYAYGFNKPSMIQKRAIRPIVSGRDVIAQSQSGTGKTATFSIGLLQ 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +           AL +APTRELA Q+ + +  L  +  V    CIGG +V  + R 
Sbjct: 101 VIDTQ------LRETQALVLAPTRELAQQIQKVVLALGDRMNVQAHACIGGTNVGEDIRK 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG---------FRDDIEF 171
           L  G H+VVGTPGR+ D I  + L    LK  V+DEADEML  G         F+D I  
Sbjct: 155 LDYGQHVVVGTPGRVFDMITRQNLRTDSLKVFVMDEADEMLTKGNELLYLILGFKDQIYD 214

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSD 230
           I    P   ++++ SAT+   I  +   +  + VR+ +  +      I      +     
Sbjct: 215 IYRFLPPGIQVVVISATLPHEILEMTGKFMTEPVRILVKRDELTLEGIRQYFVHVEREDW 274

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   + ++        A+VFC+TR  V    + + E  F V A+ GE+ Q++R+  ++  
Sbjct: 275 KFETLCDLYDSITISQAVVFCNTRHKVEWLDEKMKESNFTVGAIHGEMDQKDRNEVVRKF 334

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           RDG  RV I+TDV +RG+D+P + LVI+ ++ +N E  LHR GR+GR GRKG ++     
Sbjct: 335 RDGIYRVLISTDVWSRGLDIPGVSLVINYDVPTNREAYLHRIGRSGRYGRKGCAINFATT 394

Query: 351 NMQRRAERLFREANVSVVWEPA 372
                   +       +   P 
Sbjct: 395 EDIPTLLEIESYYGTQIDEMPM 416


>gi|190195544|gb|ACE73640.1| ATP-dependent RNA helicase DDX18 (predicted) [Sorex araneus]
          Length = 553

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 60  TSFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 119

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 120 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTYHVHTYGLIMGGSNRSAE 177

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 178 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 237

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 238 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKTNATVDGLEQGYVVCPSEKRFL 297

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 298 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 357

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 358 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 416

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 417 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 474

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 475 SHSLKQI 481


>gi|194378748|dbj|BAG63539.1| unnamed protein product [Homo sapiens]
          Length = 657

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 174 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 233

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 234 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 293

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 294 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 353

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 354 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 413

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + +++IL   G+ +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 414 VVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 473

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 474 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 533

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 534 GLATSFFNEKNMNITKDLLDLLVEAKQEVP 563


>gi|115434786|ref|NP_001042151.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|55296347|dbj|BAD68263.1| putative p68 RNA helicase [Oryza sativa Japonica Group]
 gi|113531682|dbj|BAF04065.1| Os01g0172200 [Oryza sativa Japonica Group]
 gi|215713416|dbj|BAG94553.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 759

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 175/361 (48%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + + G+   T +Q       LR +D++  A+TGSGKT+ + +     +L +  + +    
Sbjct: 246 VQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIP--GFILLKRLQHNSRDG 303

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L ++PTRELA Q+  E +     + +      GG     + RDL+ GA IVV TPGR
Sbjct: 304 PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGR 363

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + +++  +  +VLDEAD MLD+GF   I  I+     KR+ LMF+AT    + 
Sbjct: 364 LNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVR 423

Query: 195 TLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A +       V +    +   +  I     ++   ++   +  ILR     + I+   
Sbjct: 424 KIASDLLSNPVQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFC 483

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   +           +   A+ G+ SQ ER + L   R GR  + +ATDVAARG+D+ D
Sbjct: 484 STKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGRCPILVATDVAARGLDIKD 543

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---RLFREANVSVVW 369
           + +V++ +  +  E+ +HR GRTGRAG  G++         + A    ++   AN SV  
Sbjct: 544 IRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQ 603

Query: 370 E 370
           +
Sbjct: 604 Q 604


>gi|188533798|ref|YP_001907595.1| ATP-dependent RNA helicase DbpA [Erwinia tasmaniensis Et1/99]
 gi|188028840|emb|CAO96702.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
          Length = 459

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/409 (32%), Positives = 210/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L+E GY+ +T VQ A L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAASLPAILEGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   + A            AL + PTRELA QV +EL  L   T  +  + + G      
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTANIKILTLCGGQPVGA 114

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  S
Sbjct: 115 QRDSLLHAPHIVVGTPGRILDHLKRETLKLDAITTLVLDEADRMLEMGFREDIDMIISHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++R+ L+FSAT   AI  +++  Q+D + V     +   +  +         ++  A++
Sbjct: 175 PQQRQTLLFSATWPQAIAHISQKIQRDPLTVETGDVSDLPAI-EQTFYEAGAREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L         L G+L Q++R   L    +G  R
Sbjct: 234 GLLSERQPASCVVFCNTKRECDDIAYALENAQISAQPLHGDLEQRDRDQMLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V ++  +   RA
Sbjct: 294 VLVATDVAARGLDIKALSMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSLVAPDEMIRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       + W P  ++++       + L   +   S+ G  K  + 
Sbjct: 354 HALEDYLQQKLAWSPVSTLKSA----VSKPLPAEMVTVSLDGGRKAKIR 398



 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                SL  G K K     ++  L    G+    +G I + P L +V +  + V  + + 
Sbjct: 383 EMVTVSLDGGRKAKIRPGDILGALTGEGGLRGDQVGKIDIGPTLAYVAIPRELVRKVMQQ 442

Query: 525 VKLDK 529
           ++  K
Sbjct: 443 LQQVK 447


>gi|238793781|ref|ZP_04637402.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
 gi|238726845|gb|EEQ18378.1| ATP-dependent RNA helicase srmB [Yersinia intermedia ATCC 29909]
          Length = 441

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 206/418 (49%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILNEPVELEADPSRRERKKIQQWYYRADNIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      ++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGKIGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           N      V+ E  P+ +A  E+   +  +  L     ++   K+ V V +   D + +
Sbjct: 368 NEPLKPRVIDELRPTSKAPSEKTTGKPSKKVLAKRKELKEASKEKVKVKVRHRDAKNV 425


>gi|320540013|ref|ZP_08039670.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
 gi|320029936|gb|EFW11958.1| putative ATP-dependent RNA helicase, specific for 23S rRNA
           [Serratia symbiotica str. Tucson]
          Length = 461

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 216/400 (54%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T VQ A L   L+ +DV   A+TGSGKT AFG+ +   +    
Sbjct: 11  LPAEQLANLNQLGYVEMTPVQLAALPAILKGQDVRAKAKTGSGKTAAFGIGVLDNINVA- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                  +  AL + PTRELA Q+ +EL  L   T  + +    GG  +  +   L +  
Sbjct: 70  -----LVSTQALILCPTRELADQMSKELRRLARFTQNIKILTLCGGQPLGPQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF DDI+ ++  +P +R+ L+F
Sbjct: 125 HIVVGTPGRILEHLRKKTLVLEMLKVLVLDEADRMLDMGFADDIDEVISETPPQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q++ +++       + + I+ R      + R   +V+++R++   
Sbjct: 185 SATYPADIERISARVQREPLKI-EVDNGDEQTTIEQRFYETTANQRAALLVSVIRHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L  +   V+AL G+L Q+ER   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQTVFEALEAYGISVLALHGDLEQRERDQVLVRFTNRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +LELV++ EL+ +P+  +HR GRTGRAGR G+++ +       RA  +  +  +
Sbjct: 304 RGLDITELELVVNYELAFDPQVHVHRIGRTGRAGRHGLAISLCTPQEMVRAHAIEDDMQM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W P   +  +    A   L+  +    I G  K  + 
Sbjct: 364 KITWVPVSELSVV----ATTPLEAEMTTLCIDGGRKAKIR 399



 Score = 49.2 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLC-RSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
             +   +  G K K     ++  L    +G+   ++G I + P   +V +    +   + 
Sbjct: 384 EMTTLCIDGGRKAKIRPGDILGALTSGDTGLTAAAVGKIDMFPQHAYVAIHQASAHKAIQ 443

Query: 520 LLRRTVKLDKGIQLKYL 536
            L++     K  +++ +
Sbjct: 444 QLQQGKIKGKRCKVRLM 460


>gi|225873935|ref|YP_002755394.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
 gi|225793658|gb|ACO33748.1| ATP-dependent RNA helicase [Acidobacterium capsulatum ATCC 51196]
          Length = 430

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 133/394 (33%), Positives = 204/394 (51%), Gaps = 8/394 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+   +   L+   +V  T VQEA + P +  KDVL +AQTG+GKT+ F L   
Sbjct: 1   MQFSELNLSSHLKNQLAVNQFVTPTPVQEAAIPPAMEGKDVLATAQTGTGKTLGFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LLA     +    P  L + PTRELA+QV ++   L  K+    A  IGG S + + R
Sbjct: 61  ERLLA-----TKGKHPAVLILTPTRELALQVEKQYAQLAGKSLPQAATLIGGASENNQIR 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           DL+ GA ++V TPGRL D +  + +++  ++ +VLDEAD MLD+GF   I  I+   P++
Sbjct: 116 DLKAGARLIVATPGRLEDFLERRLIDLKRIEVLVLDEADRMLDMGFIPAIRRIVAKLPRQ 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ + FSATI PA+  L      + VR++  S  +  S +   A  V    +    V+ +
Sbjct: 176 RQTMCFSATIDPAVAHLLDEILTNPVRLSFGSTQQTSSSVRLIAYEVDADQKAAL-VHRV 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  ++VF  T+       K L      V  L G+ SQ +R+ AL+  + GRARV +
Sbjct: 235 VTAEEGQSLVFVGTKRRTEHVAKRLDRAGISVAVLHGDRSQSQRNRALEDFQRGRARVLV 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RGI + ++  VI+ ++    E+ +HR+GRTGRAG  G++        +R   R 
Sbjct: 295 ATDVASRGIHVDNIAQVINYDMPKMTEDFIHRAGRTGRAGATGVAATFYTPLERREFNRF 354

Query: 360 FREANVSVVWEPAPSVEAI-RERDAQRILQDPLF 392
            +  N  +      S   + RE   Q +   P+ 
Sbjct: 355 EKTLNRKIERVMIASDSGLDREERGQMVNHAPVL 388


>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 549

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 219/478 (45%), Gaps = 39/478 (8%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+   +  A+ +  Y + T +QE  + P L  KDV   AQTG+GKT AF + + 
Sbjct: 1   MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM 60

Query: 60  STLLAEND---------------RFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTG 102
             +L                   R      P    L + PTRELA QV   +  L   +G
Sbjct: 61  ERILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSG 120

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           +      GG    +++  L+NG   +V TPGRL D  +   +++  ++A+V DEAD M D
Sbjct: 121 LRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD 180

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           +GF+DD+++IL   P++R++L+FSAT++  +      +  + V +NI+ +  +  ++  +
Sbjct: 181 MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQ 240

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              V   ++   ++++L+ H  K AI+F + + SV R  K L E+    +A+S  L+Q +
Sbjct: 241 IFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQAQ 300

Query: 283 RSNALQMMR-DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           R+  ++  + +    V +ATDVAARG+D+  +++V++ EL  + E+ +HR GRTGRAG  
Sbjct: 301 RNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAGTT 360

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           G +  ++         R+       +          I   +  ++L+D            
Sbjct: 361 GQAFSLVGDKDIESLGRIEDYLKHKI---------EIGYLENDQLLKD-----------F 400

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
           K +      H P+ +                          R+R     R  +     
Sbjct: 401 KPMTSSYDGHYPKSLDRARAPREGGRGGDRGPRREGDRGPRRERGDRGPRQDRGPRPE 458


>gi|219870628|ref|YP_002475003.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
 gi|219690832|gb|ACL32055.1| ATP-dependent RNA helicase RhlB [Haemophilus parasuis SH0165]
          Length = 406

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 110/364 (30%), Positives = 183/364 (50%), Gaps = 3/364 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  AL  +G+   T +Q   L   L  +D+   AQTG+GKT+AF +A    LL   
Sbjct: 15  IHDSVLAALDSKGFEFCTPIQAKTLPYTLIRQDIAGQAQTGTGKTLAFLVATFHHLLNH- 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  + P AL +APTRELAVQ+  +   L     + +A+  GG    ++ ++++ G  
Sbjct: 74  DIPTKHNQPRALILAPTRELAVQIASDASILTQYADLRLALAYGGDGYDKQLQEIERGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
           I++GT GR+ D+++   +++  ++ VVLDEAD M DLGF  DI +++   PK      ++
Sbjct: 134 ILIGTTGRVIDYVKQGIIDLDKIQVVVLDEADRMFDLGFIKDIRYLMRKCPKPEERLTML 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+S  +  LA     +A  V I    R    I       +  D+   ++ ++     
Sbjct: 194 FSATLSHRVRELAFEDMHNAEYVEIEPLQRTGHRIKEELFYPSNEDKMALLLTLMEEEWP 253

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF +T+         L+    +V  L+G++ Q++R   L     G   + +ATDVA
Sbjct: 254 DRCIVFANTKHKCEEIWSYLSADGHRVGLLTGDIPQKKRLALLDSFTQGELDILVATDVA 313

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+ +PD+  V + +L  + E+ +HR GRTGRAG  G+S+    +        +     
Sbjct: 314 ARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFACERYAVNLPAIEEYIG 373

Query: 365 VSVV 368
            ++ 
Sbjct: 374 HAIP 377


>gi|195440590|ref|XP_002068123.1| GK12420 [Drosophila willistoni]
 gi|194164208|gb|EDW79109.1| GK12420 [Drosophila willistoni]
          Length = 541

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 163/419 (38%), Gaps = 18/419 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + + L   G+   T +Q   L   LR + ++  A TGSGKT+AF   + + L 
Sbjct: 126 FQLLPR-LHQNLQSYGFQQPTPIQMQALPVMLRNRALMACAPTGSGKTLAFLTPIINGL- 183

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    S   AL +APTRELA Q+ RE   L  +TG+            ++      
Sbjct: 184 ----RSHQTSGIRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQQHGPECK 239

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +  L AV     DE   L       F            
Sbjct: 240 QKYDILISTPNRVRFLLQQEPPLLDLSAVEWFVLDEADRLMEEGKNNFKEQLDDIYSACS 299

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
                ++    T      K A+R              +   +       + + S +  AI
Sbjct: 300 HSGKRVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGKLVAI 359

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+++       ++F  ++    +  + L      V  +  E +Q +R N ++  R+G  
Sbjct: 360 RNLVKEGLHPPVLIFVQSKDRAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGNI 419

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q     
Sbjct: 420 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTAN 479

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            R   ++ + +  +V       ++ + + +A+   + PL  + I    K +      +H
Sbjct: 480 LRSIAQIIKNSGGTVPEYML-QMKKVSKSEAKMRAKKPLDREEISTKIKPVELKPEKEH 537


>gi|168053931|ref|XP_001779387.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669185|gb|EDQ55777.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 741

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 113/364 (31%), Positives = 189/364 (51%), Gaps = 6/364 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE++     +  A+S++GY   T +Q       L  +D++  A+TGSGKT AF L +
Sbjct: 233 VKTFEDLGFDASLMGAISKQGYERPTPIQCQSCPIVLSGRDLIGIAKTGSGKTAAFVLPM 292

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +      G+ ++   GG+S   + 
Sbjct: 293 MVHIM-DQPELGKGEGPIGVICAPTRELAQQIYSEAKKFAKVHGIRISGVYGGMSKFEQF 351

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +VV TPGRL D I+ K L++     +VLDEAD M DLGF   I  I+     
Sbjct: 352 KELKAGCEVVVATPGRLIDMIKMKALSMHRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 411

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 412 DRQTLLFSATMPKRVERLAREILTDPIRVTVGEIGSANEDITQVVTVLPSDAEKTPWLLD 471

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +  +    + +VF ST+  V      ++E  F+V AL G+  Q  R   LQ  ++G   
Sbjct: 472 RLQPFVDDGDVLVFASTKLRVEELEGKISEAGFKVAALHGDKDQATRMEVLQKFKNGIYH 531

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           + +ATDVAARG+D+  ++ V++ +++ + ++ +HR GRTGRAG + G++  ++     R 
Sbjct: 532 ILVATDVAARGLDIKSIKTVVNVDIARDMDSHVHRIGRTGRAGDKDGVAHTLVTGKEARF 591

Query: 356 AERL 359
           A  L
Sbjct: 592 AGEL 595


>gi|330819324|ref|YP_004348186.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
 gi|327371319|gb|AEA62674.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
          Length = 465

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + GY  +T +Q A L   L  +D++  A+TGSGKT AF LAL S L    
Sbjct: 15  LSPAMLANLEQLGYTEMTPIQAASLPLALAGQDLIAQAKTGSGKTAAFSLALLSRLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 72  ---ARRFDVQAMILCPTRELADQVAQEIRRLARAEENIKVLTLCGGTPMRPQAASLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P +R  L+F
Sbjct: 129 HIVVGTPGRIMDHLERGTLALGALNTLVLDEADRMLDMGFFDDIATVARQCPTERLTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    IT L++ +     +    +E      I  R   V   +R +A+  +L ++   
Sbjct: 189 SATYPEGITKLSRQF-LRDPKEIKLAEQHDARKIRQRFYEVTEDERLHAVGQLLNHYRPA 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL+   F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STIAFCNTKQQCRDLLDVLSAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGIEQAQGR 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W+P  S+           L  P+    I G  K+ + 
Sbjct: 368 EVEWQPLASLTPAS----NEPLLPPMETLQILGGRKEKIR 403



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 20/63 (31%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K+K     ++  L   +G     IG I V    T+V V         R
Sbjct: 387 PPMETLQILGGRKEKIRPGDVLGALTGDAGFQGSQIGKINVTEFSTYVAVERSVAHEALR 446

Query: 524 TVK 526
            + 
Sbjct: 447 KLN 449


>gi|327268476|ref|XP_003219023.1| PREDICTED: ATP-dependent RNA helicase DDX3X-like isoform 1 [Anolis
           carolinensis]
          Length = 713

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 196/390 (50%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 227 IESFSDVDMGEIIMGNIELTRYTRPTPVQKYAIPIIKDKRDLMACAQTGSGKTAAFLLPI 286

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 287 LSQIYTDGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAYRSKVRPC 346

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 347 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 406

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++          + +MFSAT    I  LA+++ ++ + + +        +I  +
Sbjct: 407 PQIRRIVEKDTMPPKGVRQTMMFSATFPKEIQMLARDFLEEYIFLAVGRVGSTSENITQK 466

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 467 VVWVEDSDKRSFLLDLLDATGKDSLTLVFVETKKGADSLEDFLFREGYACTSIHGDRSQR 526

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR+ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 527 DREEALHQFRSGRSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 586

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 587 GLATSFFNERNINITKDLLDLLVEAKQEVP 616


>gi|303282327|ref|XP_003060455.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
 gi|226457926|gb|EEH55224.1| DEAD/DEAH box helicase [Micromonas pusilla CCMP1545]
          Length = 671

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 180/401 (44%), Gaps = 22/401 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L+ +G    T +Q   L   L  +D++  A TGSGK++ F L +
Sbjct: 223 IKSFKEMKFPGPILNELARKGIARPTPIQIQGLPVILTGRDIIGIAFTGSGKSLTFILPM 282

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELE-------WLYAKTGVVVAVCI 109
             + + E  R        P  L + P+RELA Q    +E               ++    
Sbjct: 283 IMSAMMEERRMPLQGMEGPCGLILCPSRELARQTHEVIEGFTVELSKQGMSEMRIMLCIG 342

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G  S  +       G H+V  TPGRL D +  K +N+   K + LDEAD M+DLGF DDI
Sbjct: 343 GIDSREQSDIVRDRGVHMVTATPGRLKDLLHRKRMNLDICKYLCLDEADRMVDLGFEDDI 402

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I      +R+ L+FSAT+   I   A++   + + VN+      + D+      V   
Sbjct: 403 RDIYSFFKSQRQTLLFSATMPVKIRKFAESALVNPIVVNVGRAGAANLDVIQEVEYVKQE 462

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       ++FC  +A V    + L     + VA+ G   Q ER   +  
Sbjct: 463 AKIVYLLECLQKTAPP-VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKGQDERDWGISE 521

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  R  V +ATDVA +G+D P+++ VI+ ++    EN +HR GRTGR G+ G++   I 
Sbjct: 522 FKSERKDVLVATDVAGKGLDFPNIQHVINYDMPEEIENYVHRIGRTGRCGKTGIATTFIN 581

Query: 350 QNMQR----RAERLFREANVSVVW------EPAPSVEAIRE 380
           +N         + L REA   +        +P    E + +
Sbjct: 582 KNQSETTLLDLKHLLREAKQRIPPVLAMLDDPMDQAEELAK 622


>gi|152969927|ref|YP_001335036.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954776|gb|ABR76806.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 457

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEINTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G +   IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|332305039|ref|YP_004432890.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172368|gb|AEE21622.1| DEAD/DEAH box helicase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 459

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 134/407 (32%), Positives = 215/407 (52%), Gaps = 14/407 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + + L   G+  +T +Q   L   L  +DV+  A+TGSGKT AFGLAL 
Sbjct: 3   KEFSSLGLEPALLDNLQSMGFSQMTDIQADTLPAILSGRDVVAKAKTGSGKTAAFGLALL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             L  +  R        AL + PTRELA QV  E+  L      + V    GG  +  + 
Sbjct: 63  HNLDVKRFRV------QALVMCPTRELAEQVALEIRRLGRAIHNIKVLTLCGGTPMGPQI 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+ DH+  + L++S +  +VLDEAD MLD+GF D+++ ++ S P 
Sbjct: 117 GSLEHGAHIIVGTPGRIMDHLYKRRLDLSEVNTLVLDEADRMLDMGFEDEMDAVIKSVPA 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT   +I  ++   QKD + V + S +   S        V  + R  A   +
Sbjct: 177 QRQTLLFSATYPESIAAISGQVQKDPLEVTVESTHDTDSI-QQVFFEVDDAHRTKATAAL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L ++  ++AIVFC+T+ +       L      V+AL G+L Q+ER+  L    +    V 
Sbjct: 236 LSHYQPESAIVFCNTKIACQEVADSLQSLGVSVLALHGDLEQRERNQVLVRFANKSVSVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ ++  VI   ++ +PE  +HR GRTGRA  KG+++ ++  +   RA  
Sbjct: 296 VATDVASRGLDIKEVNAVISYHITPDPEVHIHRIGRTGRAESKGVALTLVAPDEVARANA 355

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       + W     ++A+R     R++Q       + G +K  + 
Sbjct: 356 IEDYQKAKLKWT---GIQAMR-FHVNRLVQPQYATLCVDGGKKAKLR 398



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKG 530
           +  G K K     L+  L + + I    IG I +     +V V    V    R +   K 
Sbjct: 389 VDGGKKAKLRPGDLLGALTKQAEIPGDDIGKIHITEFHAYVAVKTRSVKRAMRQLGEGKI 448

Query: 531 IQLKY 535
              K+
Sbjct: 449 KGKKF 453


>gi|322376932|ref|ZP_08051425.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
 gi|321282739|gb|EFX59746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M334]
          Length = 447

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 199/459 (43%), Gaps = 25/459 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L   +
Sbjct: 8   FKKYISEALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDETS 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQN 123
           D      +  A+  AP+RELA Q+ +    + A + V V V           +  +   N
Sbjct: 68  D------SVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIDKLASN 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  + +
Sbjct: 122 QPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFM 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +   
Sbjct: 182 VFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQLMQ 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+         L     +V  + G+++ +ER   +  +++      +ATD+
Sbjct: 242 PYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDL 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L +  
Sbjct: 302 AARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELEK-- 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + + + P             ++++D  F D+   D +   +    K D E I     + 
Sbjct: 360 -LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKK 405

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +      ++I        R   R ++RA          
Sbjct: 406 KKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|2558533|emb|CAA73349.1| putative RNA helicase (DEAD box) [Danio rerio]
          Length = 688

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 113/394 (28%), Positives = 194/394 (49%), Gaps = 26/394 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 207 IDSFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPV 266

Query: 59  ASTLLAENDRFS----------------PASAPLALAIAPTRELAVQVGRELEWLYAKTG 102
            S +  +    +                    P++L +APTRELA+Q+  E      ++ 
Sbjct: 267 LSQIYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSH 326

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V   V  GG  + ++ RDL+ G H++V TPGRL D +    + + +   +VLDEAD MLD
Sbjct: 327 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD 386

Query: 163 LGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           +GF   I  I++          + +MFSAT    I  LA+++ +D + + +        +
Sbjct: 387 MGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSEN 446

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I  + V V  +D+ + ++++L   G  +  +VF  T+         L    +   ++ G+
Sbjct: 447 ITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 506

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ++R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR
Sbjct: 507 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566

Query: 338 AGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            G  G++         N+ +    +  EA   V 
Sbjct: 567 VGNLGLATSFFNDKNGNITKDLLDILVEAKQEVP 600


>gi|15229677|ref|NP_188490.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75335038|sp|Q9LIH9|RH51_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 51
 gi|9294321|dbj|BAB02218.1| DEAD-box ATP-dependent RNA helicase [Arabidopsis thaliana]
 gi|17979083|gb|AAL49809.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|20465335|gb|AAM20071.1| putative DEAD box helicase protein [Arabidopsis thaliana]
 gi|332642600|gb|AEE76121.1| DEAD-box ATP-dependent RNA helicase 51 [Arabidopsis thaliana]
          Length = 568

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 222/478 (46%), Gaps = 16/478 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  ++ +    A+ E G+  +T +Q   + P L  KDVL +A+TGSGKT+AF +    
Sbjct: 90  TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  RFSP +    + I PTRELA+Q     E L       V++ IGG +   E + 
Sbjct: 150 LLFKE--RFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQR 207

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           + +G+++V+ TPGRL DH++        HLK +V+DEAD +L+  F +D+  IL   PK 
Sbjct: 208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKT 267

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+  +FSAT +  +  LA+      V V++    R+ ++   +    +V    R   +++
Sbjct: 268 RQTALFSATQTSKVKDLARVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLIS 327

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  +VF ST  SV   T+++      V  + G + Q  R+         +  +
Sbjct: 328 FLKKNLNKKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGI 387

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVF-VIPQNMQRR 355
            + TDVAARG+D+P ++ +I  +    P   +HR GRT R  G KG ++  +IP+ +Q  
Sbjct: 388 LLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQ-- 445

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             R  + A V V             + A ++ +     L+ +  D  +        H  +
Sbjct: 446 FIRYLKAAKVPVKELEFNEKRLSNVQSALEKCVAKDYNLNKLAKDAYRAYLSAYNSHSLK 505

Query: 415 KI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            I        L +  +   +      +++ SG  + R   +     G S  +  G S 
Sbjct: 506 DIFNVHRLDLLAVAESFCFSSPPKVNLNIESGAGKVRKARKQQGRNGFSPYSPYGKST 563


>gi|329897169|ref|ZP_08271909.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
 gi|328921324|gb|EGG28718.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC3088]
          Length = 397

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 196/378 (51%), Gaps = 6/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + + + + + G+V  + +Q AIL   LR  D +  AQTG+GKT AF + + +
Sbjct: 16  TFESLDLDERLLKGIKDLGFVTCSPIQGAILPHTLRGLDAIGKAQTGTGKTAAFLITVFN 75

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRER 118
            LLA           P AL IAPTREL +Q+  + + L   TG+ V  +  G     + +
Sbjct: 76  DLLAHPIDDERFVGEPRALVIAPTRELVMQIAEDAKDLGKYTGLRVVTLIGGMDYQKQLQ 135

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  Q    +VV TPGRL D +  + L +  ++ +VLDEAD MLD+GF   ++ I+ ++P 
Sbjct: 136 KLDQEPVDLVVATPGRLIDFMTRQDLFLDRVETIVLDEADRMLDMGFIPQVKRIVRATPP 195

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           K       FSAT +  I  L++ +    +++ I  E+   +++D +  LV+   R   ++
Sbjct: 196 KEHRQTLLFSATFTQDIINLSEQWTYKPIKIEIEPESVATANVDQKVYLVSAEQRYKILL 255

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+LR   A + IVF + R  V    + L +       LSGE+ Q +R+  L+  + G+ +
Sbjct: 256 NLLRDEAATSVIVFANRRDQVRHLYERLRKASIPCGVLSGEIPQNKRTRTLEDFKRGKLK 315

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA RGI +  +  V++  L  +P++ +HR GRTGRAG  G S+    ++     
Sbjct: 316 VLVATDVAGRGIHVDGVSHVVNYNLPEDPDDYVHRIGRTGRAGATGTSISFASEDDAFLL 375

Query: 357 ERLFREANVSVVWEPAPS 374
             +       +  E  P 
Sbjct: 376 PDIEALLGERLECEHPPE 393


>gi|315637556|ref|ZP_07892763.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
 gi|315478147|gb|EFU68873.1| ATP-independent RNA helicase DbpA [Arcobacter butzleri JV22]
          Length = 454

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 206/379 (54%), Gaps = 11/379 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+ +   + L    Y  LT +QE  +   L+ KD++  A+TGSGKTVAF L + 
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
           + L A+  +        AL +APTRELA Q+ + L  L      V V    GGV    + 
Sbjct: 61  NKLKAKEFKI------QALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQV 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ+ AHIVV TPGR+  HI+ K +N+ ++   VLDEAD+MLD+GF DDI  I+++ PK
Sbjct: 115 VSLQHNAHIVVATPGRVLKHIKEKNINLENINTFVLDEADKMLDMGFYDDIMEIIENLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I   A N  K+ +   I+ E       + +   V  S++   I  +
Sbjct: 175 NRQTMLFSATYEKNIEIFASNILKNPIYKEISDEKEILI--NQKFYEVTPSEKTALIPAL 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + ++ AK  ++FC+ + +  +    L +    ++ L  +L Q++R   + +  +    + 
Sbjct: 233 ISHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+ + D++LVI+ +LS + +   HR GRT RAG+ G+++ +  +N   + E 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFE- 351

Query: 359 LFREANVSVVWEPAPSVEA 377
           + +E   ++  E    ++ 
Sbjct: 352 IIKEKFNNIKIENPKDIKD 370



 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           S +         ++ G KQK     ++  L   +G+    IG I V    ++V V +D +
Sbjct: 373 SFEINSNFRTVFINGGKKQKLRKGDILGALISEAGLKSDDIGKIDVMDFCSYVAVKSDKI 432

Query: 519 DLLRRTVKLDKGIQLKYLGGEK 540
             +  T K  +     Y+  EK
Sbjct: 433 SNIFSTSKSMRIKGKYYIIIEK 454


>gi|296190482|ref|XP_002743273.1| PREDICTED: eukaryotic initiation factor 4A-III-like [Callithrix
           jacchus]
          Length = 437

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 195/373 (52%), Gaps = 9/373 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV   +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVTAQSQSGTGKTATFNISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHTCIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IRG+ L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRGRSLRTCAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   I  +   +  D VR+ +  +      I    V +     + + + ++ 
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPVRILVKRDKLTLEGIKQFFVAVEREEWKFDTLCDLY 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++FC+T+  V   T+ + E  F V ++ G++ Q+E  + ++  R G ++V I
Sbjct: 273 DTLTITQVVIFCNTKRKVDWLTEKMREANFTVSSIHGDMPQKEWESIMKEFRAGTSQVLI 332

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARG+D+P + L+I  +L++N E  +HR GR+GR GRKG+++  +  +  R    +
Sbjct: 333 STDVWARGLDVPQVSLIITYDLTNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392

Query: 360 FREANVSVVWEPA 372
            +  +  +   P 
Sbjct: 393 EQYYSTQIDEMPM 405


>gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
 gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. DR1]
          Length = 383

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 198/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     ++++
Sbjct: 65  LLHNPIQEQRFRGEPRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIIVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + + V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L    ++V  LSGE++Q +R   L+  + G+  V
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLEQFKQGKNNV 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  VI+  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVINYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|238758478|ref|ZP_04619655.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
 gi|238703382|gb|EEP95922.1| ATP-independent RNA helicase dbpA [Yersinia aldovae ATCC 35236]
          Length = 457

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +    
Sbjct: 8   LPAEQLSNLNELGYTEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  
Sbjct: 68  ------FVTQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAP 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R K L +  LK +VLDEAD MLD+GF D I+ ++  +P +R+ L+F
Sbjct: 122 HIVVGTPGRIQEHLRKKTLVLDELKILVLDEADRMLDMGFTDAIDDVIAYTPVQRQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q++ +      +  +   I+          R   ++++L ++   
Sbjct: 182 SATYPAGIERISARVQREPL-NVEVDDGDEEPAIEQVLFETTREKRLPLLISVLSHYQPD 240

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 241 SCVVFCNTKKDCQSVYEALESRGISVLALHGDLEQRDRDQVLVRFANHSCRVLVATDVAA 300

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL LV++ EL+ +PE  +HR GRTGRAG  G++V +       RA  +     +
Sbjct: 301 RGLDIKDLALVVNFELAFDPEVHVHRIGRTGRAGMSGLAVSLCTPQEMTRAHAIEDYLQI 360

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W    S E I  R    + +  +    I G  K  + 
Sbjct: 361 KLKWT---SAEQI-SRSTNTMPEPEMVTLCIDGGRKAKIR 396



 Score = 57.3 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 22/68 (32%)

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL 521
                    +  G K K     ++  L   +G+    +G I + P   +V +        
Sbjct: 378 PEPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRA 437

Query: 522 RRTVKLDK 529
            + ++  K
Sbjct: 438 LQQLQQGK 445


>gi|110641577|ref|YP_669307.1| ATP-dependent RNA helicase DbpA [Escherichia coli 536]
 gi|110343169|gb|ABG69406.1| ATP-independent RNA helicase DbpA [Escherichia coli 536]
          Length = 457

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +          L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLSSAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I    A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLKAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLK 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|297560235|ref|YP_003679209.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844683|gb|ADH66703.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 489

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 191/364 (52%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P  +   L+ +G    +++Q A L   L  +DVL  +QTGSGKT+AFGLAL + 
Sbjct: 62  FEDLEMPAQLKSTLARQGLTTPSAIQAATLPNSLAGRDVLGRSQTGSGKTLAFGLALLAR 121

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R +    PLA+ +APTRELA QV   L        V     +GG+ + R+ R L
Sbjct: 122 L---EGRVAEPRRPLAVVLAPTRELAQQVNDSLAPYARSLRVRTTTVVGGMPISRQSRAL 178

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D +      +  +   VLDEAD+M D+GF   +  IL   P   +
Sbjct: 179 RQGVELVVATPGRLRDLMERDDCVLDQVDVTVLDEADQMTDMGFMPQVTAILTEVPTGGQ 238

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   + TL + +  D V  ++       S +++  + V+ +D+ +        
Sbjct: 239 RMLFSATLDRNVDTLVRRFLNDPVVHSVDPSEGAVSTMEHHVLHVSHADKQD--AATRIA 296

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R  K L     +   L G  SQ +R+  L+  ++G     +AT
Sbjct: 297 ARDGQVILFLDTKHAVDRMAKHLLNSGVRAAPLHGGRSQPQRTRTLKQFKEGTVTALVAT 356

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG+ G  V ++  + +R  +RL R
Sbjct: 357 NVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGQTGSVVTLVLPSERRDMDRLMR 416

Query: 362 EANV 365
            A +
Sbjct: 417 LARI 420


>gi|168490848|ref|ZP_02714991.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574625|gb|EDT95153.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
           CDC0288-04]
          Length = 445

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 202/462 (43%), Gaps = 30/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVSRQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I    PK  
Sbjct: 119 ESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGCLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I  G 
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMI--GL 400

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           ++  +      ++I        R   R ++RA          
Sbjct: 401 VKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 442


>gi|227550039|ref|ZP_03980088.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077885|gb|EEI15848.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 430

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 129/374 (34%), Positives = 188/374 (50%), Gaps = 4/374 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I +AL E G  +  S+QE      L  KDV+  A+TG GKT AFG+ L  
Sbjct: 14  TFAELGVAAEIVDALHELGITHTFSIQELAAPLALAGKDVIGQARTGMGKTYAFGVPLLD 73

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + D       P AL I PTRELAVQVG +L      T V +    GG     +   
Sbjct: 74  RVFDDADVAELDGTPRALIIVPTRELAVQVGEDLSRAAKYTPVRITTVYGGRPYEAQIAV 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +G  +VVGTPGRL D +    L +  +  +VLDEADEMLDLGF  DI+ +  + P+  
Sbjct: 134 LSSGVDVVVGTPGRLIDLLNRGNLQLDRVAVLVLDEADEMLDLGFFPDIQKLWAALPQPV 193

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I T   +   +   +R   A+    HS            D+      I
Sbjct: 194 QAMLFSATMPGPILTLARSLMNRPVHIRAEAANTPSTHSTTRQVVFRSHRMDKLEVTARI 253

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    IVF   + + +   + LAE  F V ++ G+L Q  R  AL+  R G   + 
Sbjct: 254 LQARGRGRTIVFTRMKRTAAEVARDLAERGFDVGSVHGDLGQGAREQALEAFRSGEVSIL 313

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   +P   +HR GRTGRAG+ G++V ++  +  ++   
Sbjct: 314 VATDVAARGIDVDDVTHVINFQTPDDPMTYVHRIGRTGRAGQTGIAVTLVGFDEGQKWTA 373

Query: 359 LFREANVSVVWEPA 372
           +  E  + +   PA
Sbjct: 374 INAELGLEMPDPPA 387


>gi|145614688|ref|XP_361928.2| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
 gi|152032666|sp|A4RN46|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|145021588|gb|EDK05717.1| hypothetical protein MGG_11403 [Magnaporthe oryzae 70-15]
          Length = 1012

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 110/419 (26%), Positives = 198/419 (47%), Gaps = 15/419 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + +++  Y   T++Q   L   +  +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 385 LTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHI-KDQ 443

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ L + PTRELAVQ+ R+ +      G+      GG  +  +  DL+ GA 
Sbjct: 444 EPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAE 503

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV T GR+ D +      +  L+    +VLDEAD M D+GF   +  I  +    R+ +
Sbjct: 504 IVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTV 563

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI----L 239
           +FSAT+   +  L K   K+ V + +  ++   S+I     +     + N ++ +     
Sbjct: 564 LFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELY 623

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      +++F   +       + L    +  ++L G   Q +R + +   + G   V I
Sbjct: 624 KDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMI 683

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  + +  +  A  +
Sbjct: 684 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGI 743

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
            +    S    P   +E +R+   +++            D+       L K D E+ AA
Sbjct: 744 AKALEQSGQPVPEKLIE-MRKAFREKVKAGKA------KDQSGFGGKGLEKLDKEREAA 795


>gi|227549310|ref|ZP_03979359.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078629|gb|EEI16592.1| possible ATP-dependent RNA helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 430

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 6/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ I   L+++G      +QE  +   L  +DVL    TGSGKT  FGL +
Sbjct: 1   MTSFADLGLPRPIVNVLAKQGITQPFPIQEEAIPDALAGRDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L +APTRELA Q+   L+ L A  G+ +   +GGV+++   
Sbjct: 61  LARL---AGAPSKPGHPRGLILAPTRELATQIRERLDDLAAALGLRLLDVVGGVNINNHL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I  + L   H++   LDEAD+M D+GF   +  +LD +PK
Sbjct: 118 RSLAAPVDVLVATPGRAEDLISQRKLFFDHVEITALDEADQMADMGFLPQVRKLLDRTPK 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L   Y  D V  + A      + +++  +LV   D  + +V  
Sbjct: 178 GGQRLLFSATLDGDVEKLIARYMSDPVTHSTAPVQASVNTMEHYRLLVGDRDARSDVVLH 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L         L G+  Q  R+ AL+   DG A V 
Sbjct: 238 IGAREGK-TIMFMRTKHGVDRQVKKLRRAGINAQGLHGDKGQGARTRALEGFGDGTAPVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++    ++  ++
Sbjct: 297 VATDIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVLDEQEKEVQQ 356

Query: 359 LFREANVSVVW 369
           L  +A VS   
Sbjct: 357 LMNKAGVSATP 367


>gi|15898685|ref|NP_343290.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|284175881|ref|ZP_06389850.1| ATP-dependent RNA helicase [Sulfolobus solfataricus 98/2]
 gi|13815150|gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|261603175|gb|ACX92778.1| DEAD/DEAH box helicase domain protein [Sulfolobus solfataricus
           98/2]
          Length = 343

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 107/357 (29%), Positives = 169/357 (47%), Gaps = 20/357 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FEN+ + + +ALSE GY+  T VQE ++   L  K V+  A+TGSGKT A+ + +    
Sbjct: 1   MFENLSEDLRKALSEAGYIKPTKVQEVVIPELLNGKSVIAQAKTGSGKTAAYVIPILERN 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL ++PTRELA Q+  E+  L     + V++      +     D Q
Sbjct: 61  ST------------ALILSPTRELATQILDEIRKLGKYKQIDVSLI-----IGGMSYDGQ 103

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + IVVGTPGRL D      ++ S    +++DEAD MLD+GF DDI  IL+ S  K   
Sbjct: 104 RQSRIVVGTPGRLLDLWSKGKIDFSGYDVIIVDEADRMLDMGFIDDIRMILNHSNAKITG 163

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +      +T   +  +     V    +  +     +  V    SD+ + ++      
Sbjct: 164 FFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQIFVKVRNDWSDKVSKLL---EEI 220

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +ATD
Sbjct: 221 SGEKILVFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVATD 280

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +A+RGID+ D++ VI+ ++  + E  +HR GRTGR GR G +V           +R+
Sbjct: 281 LASRGIDIVDVDKVINFDIPRDVETYIHRVGRTGRMGRVGQAVTFYTFREADMIKRI 337


>gi|238762788|ref|ZP_04623757.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
 gi|238699093|gb|EEP91841.1| ATP-dependent RNA helicase srmB [Yersinia kristensenii ATCC 33638]
          Length = 441

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 124/425 (29%), Positives = 206/425 (48%), Gaps = 11/425 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L  
Sbjct: 3   VTTFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV  +   L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIV 236
           +++ L+FSAT+                    A  +R+      +       +  +   +V
Sbjct: 181 RKQTLLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADDIEHKTALLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+    + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  
Sbjct: 241 HLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ--- 353
           V +ATD+A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +     
Sbjct: 301 VLVATDIASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLL 360

Query: 354 RRAERLFRE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKH 411
            R  R  +E     V+ E  P+ +A  E+   +  +  L     ++   K+   V +   
Sbjct: 361 GRIGRYLKEPLKPRVIDELRPTSKAPSEKSTGKPSKKVLAKRKELKEAGKEKAKVKVRHR 420

Query: 412 DPEKI 416
           D + +
Sbjct: 421 DAKNV 425


>gi|123474251|ref|XP_001320309.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121903112|gb|EAY08086.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 424

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 105/381 (27%), Positives = 183/381 (48%), Gaps = 8/381 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +  ++   +   G+   + +Q   + P L  + V+  AQ+G+GKT AF + + + +   
Sbjct: 46  ELKPLLLRGIYNYGFRGPSDIQSLSIKPILMNRCVIAQAQSGTGKTGAFAIGILNRIDTT 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                      AL +APTRELA Q+     E       + V +  GG SV  ++   Q  
Sbjct: 106 QP------TTQALVLAPTRELATQIYYFFVEIGSKMADLKVELFKGGNSVADDQAKAQEC 159

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI V TPGR  D I    L   +++   +DEADEML  GF   I+ I +   K  + L+
Sbjct: 160 PHIAVSTPGRALDLISKGYLRCENIQIACIDEADEMLGEGFISQIKEIFEYLNKDIQFLL 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
           FSAT    I ++   +  D V++ + +E      I      +    ++   +++I     
Sbjct: 220 FSATFPKEILSIIDQFMNDPVKILVKAEMLTLEGIKQFYVNVETSVNKFPTLLDIYGSLS 279

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F +++ +V    K    + F + A+ G + Q ER   +   R G  R  ++TD+
Sbjct: 280 IQKAVIFANSKETVEYLQKSFEANEFNISAIHGGMEQAERDRIMHQFRTGNTRALVSTDL 339

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ EL +  EN LHR GR+GR GRKG+++ +   +   R + + +  
Sbjct: 340 LARGIDVQQITLVINFELPNTAENYLHRIGRSGRYGRKGIAINICDASDMIRIKEIEKIY 399

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
              +   PA   + +++ ++Q
Sbjct: 400 QTQIAELPADIADLVKDANSQ 420


>gi|302521780|ref|ZP_07274122.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
 gi|302430675|gb|EFL02491.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase [Streptomyces sp.
           SPB78]
          Length = 485

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 124/369 (33%), Positives = 189/369 (51%), Gaps = 11/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G V+   +Q   L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 17  LPET-AEALEAVGIVSPFPIQSLTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVSA 75

Query: 63  LAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R +P     AP AL + PTREL  QV  +L+       V V    GG +   +  
Sbjct: 76  DVEAGRATPDKLSEAPQALVVVPTRELCTQVTNDLQTAGKVRDVRVLAIYGGRAYEPQVE 135

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D    + L++S ++A+VLDEADEMLDLGF  D+E I+   P K
Sbjct: 136 ALKKGVDVVVGTPGRLLDLAGQRKLDLSKVRALVLDEADEMLDLGFLPDVEKIVAMLPVK 195

Query: 180 RRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+  A+        +        +   EN   ++ +         D+   + 
Sbjct: 196 RQTMLFSATMPGAVVALARRYMSQPTHINATSPDDENATVANTEQHVFRAHSMDKPEMVA 255

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G    ++FC T+ + +  ++ L    F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 256 RILQAEGRGLVMIFCRTKRTAADISEQLQRRGFAAGAVHGDLGQGAREQALRAFRNGKVD 315

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAGR G +V ++  +   R 
Sbjct: 316 VLVCTDVAARGIDVEGVTHVINYQTPEDEKTYLHRIGRTGRAGRSGTAVTLVDWDDIPRW 375

Query: 357 ERLFREANV 365
           + + +   +
Sbjct: 376 QLINKALGL 384


>gi|301025571|ref|ZP_07189094.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300395891|gb|EFJ79429.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
          Length = 457

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 197/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLDELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGL 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P   +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPVNSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|261820728|ref|YP_003258834.1| ATP-dependent RNA helicase DbpA [Pectobacterium wasabiae WPP163]
 gi|261604741|gb|ACX87227.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
           WPP163]
          Length = 490

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 205/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +
Sbjct: 41  LPAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L      + +    GG  + ++   L +  
Sbjct: 101 ------FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAP 154

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+F
Sbjct: 155 HIVVGTPGRIQDHLRKRSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLF 214

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+   R  IA    + +  + R        R   ++ IL ++   
Sbjct: 215 SATYPEEIEQISARVQRQPQRFEIADNVEESAI-EQRFYETTKEQRLPLLIAILSHYQPA 273

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+         L      V AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 274 SCVVFCNTKRDCQSVFDALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAA 333

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L LV++ EL+ +PE  +HR GRTGRAG +G++V +       RA  +     +
Sbjct: 334 RGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIEDYLGM 393

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W    S + I  R  +  L+  +    I G  K  + 
Sbjct: 394 RIKWT---SADEI-SRSGEVALEPEMMTLCIDGGRKAKIR 429



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 23/75 (30%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G            +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 404 SRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPLHAYVAIR 463

Query: 515 ADGVDLLRRTVKLDK 529
            D      +  +  K
Sbjct: 464 KDSAKRALQQFQKGK 478


>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 399

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 178/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +A+   GY   T++Q   +   +  +D++ +AQTG+GKT +F L +   L    
Sbjct: 8   LSKPITDAIQSLGYAKPTTIQNKAIPAIMHGEDLIAAAQTGTGKTASFVLPILEKL--AK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL +APTRELA Q+ ++++       +      GGV    +++ L +G  
Sbjct: 66  GETQRKKRIRALILAPTRELAEQIDQKVKQYGQNLSLTSLAMYGGVDEKPQKQALIDGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D    + +    ++ +V+DEAD MLD+GF DDI  ILD  P   + L+FS
Sbjct: 126 ILIATPGRLLDLYGKRAVYFEEVEILVMDEADRMLDMGFIDDINKILDRLPTDIQHLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    D   ++IA+      +I+   + V    +   + ++++ +    
Sbjct: 186 ATLSNKVRDLAKTAVHDPFEISIAANQASKKNIEQWLITVDKDKKSALLSHLIKENDWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   + G+ +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLLADFKAGKIQYMIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA  +G ++  + ++  +    +       
Sbjct: 306 GIDIEGLSRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        +
Sbjct: 366 IERREVEGFK 375


>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 443

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    + N T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHFDFKNATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPILHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++   A  P AL +APTRELA QV  EL+ +        ++ +GG + + + + L+    
Sbjct: 66  NKSFSAKDPRALILAPTRELAKQVYGELKSMLGGLSYDASLIVGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I        ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHMAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +                         +   L  +++ +   ++   
Sbjct: 186 SATLDHADVNDIALEMLDAPKRIAIDIGSAEHKDISQKFYLCDHLDHKESLLERAIQEAN 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R T+ L     + +ALSG L+Q +R+  +        ++ + TD+
Sbjct: 246 YKQLIIFTATRVDTERLTEKLNSDGLKAIALSGSLTQTQRNTIMSQFERAVFKILVTTDI 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  VI+ ++  + E  +HR GRTGRAG KG ++  +        +R+    
Sbjct: 306 ASRGLDIANVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISFVGPKDWDSFKRVETYL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     +E
Sbjct: 366 QQDINFSQFDGLE 378


>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 117/363 (32%), Positives = 188/363 (51%), Gaps = 10/363 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 56  KSFKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDLIGLAETGSGKTAAFALPIL 115

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 116 QALMDKPQ------SLFGLVLAPTRELAYQISEAFEALGSLISVRCAVIVGGMDMVPQAI 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 170 ALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPR 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V 
Sbjct: 230 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQTFLFIPHKYKDIYLVY 289

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++AI+F  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 290 LLNEFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSYRLGALGKFRSRSRDI 349

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G +   + Q       
Sbjct: 350 LVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWL 409

Query: 358 RLF 360
           R+ 
Sbjct: 410 RIE 412


>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
 gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
           bacterium SWAT-3]
          Length = 443

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 9/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATEIQSKAIPVAMAGKDLLASSKTGSGKTLAFVLPMIHKAL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +        A+ +GG + + + + L+    
Sbjct: 66  TKAFSARDPRGVILAPTRELAKQVYGELRSMLGGLSYEAALILGGENFNDQVKALRKYPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLDSVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S  +         +   L  ++  +  +L    
Sbjct: 186 SATLDHAEVNDIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVLEEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +TRA   R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER----L 359
           A+RGID+P++  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R    L
Sbjct: 306 ASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWESFKRVELYL 365

Query: 360 FREANVSVVWEPAPSVEAIRERD 382
            ++ N SV+       + I+ R 
Sbjct: 366 QQDLNFSVLEGLKGKFKGIKPRK 388


>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 678

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 106/407 (26%), Positives = 178/407 (43%), Gaps = 18/407 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F++  +  ++ + LS   +   T VQ   +   +  +D++ SAQTGSGKT A+ L +
Sbjct: 252 MTSFQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLPI 311

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSV 114
              LL +  +         P  + IAPTREL  Q+   +      T +   +  G     
Sbjct: 312 LHNLLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSKGTDIRNGLLYGGTSVY 371

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           H++ + LQ G HI+  TPGRL D +    +  S +K  VLDEAD MLD+GF+ DIE +L 
Sbjct: 372 HQKSKILQRGVHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRMLDMGFKPDIEQVLT 431

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR------QHSDIDYRAVLVAL 228
           +S         +   S    +  ++     ++ +                +     +   
Sbjct: 432 NSTMPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVGEIGGACKDVVQTVIEVTKF 491

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++  +  I      +  IVF   +         L+E  F   ++ G   Q ER  AL+
Sbjct: 492 KKKNALLDIIKEMENCQGTIVFVERKKVADYTAAYLSEVDFPTTSIHGAREQPEREQALR 551

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  R ++ +AT VAARG+D+  +  V++ +L    +  +HR GRTGR G  G ++   
Sbjct: 552 DFKTNRMKILVATAVAARGLDIKGVNYVVNFDLPKTIDEYVHRIGRTGRLGNAGKAISFF 611

Query: 349 -PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            P++    A  L +    +    P+   +A     A+RIL  P   +
Sbjct: 612 DPESDGPLAAELIKILKQADQEVPSFLNDA-----AERILASPTIDN 653


>gi|288935786|ref|YP_003439845.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|290509812|ref|ZP_06549183.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
 gi|288890495|gb|ADC58813.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
 gi|289779206|gb|EFD87203.1| ATP-independent RNA helicase DbpA [Klebsiella sp. 1_1_55]
          Length = 457

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEIDTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G +   IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|115533224|ref|NP_001041134.1| hypothetical protein F58E10.3 [Caenorhabditis elegans]
 gi|3877954|emb|CAB04518.1| C. elegans protein F58E10.3a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 561

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 179/370 (48%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I E L  + +   T +Q       +  +D++  A+TGSGKT+AF L     +  + 
Sbjct: 137 LPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQA 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV           G+ +    GG S   + RDL+ G  
Sbjct: 196 HR-QRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +     N+     +VLDEAD MLD+GF   I+ I+      R+ LMFS
Sbjct: 255 IVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRDNAIVNILRYH 242
           AT    +  LA ++QKDA  +N+ S     +    +        A   +   ++N +   
Sbjct: 315 ATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHIMNQ 374

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATD
Sbjct: 375 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATD 434

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+ D++ VI+ +  +N E+ +HR GRTGR+ +KG +          +A+ L + 
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKV 494

Query: 362 --EANVSVVW 369
             EA  +V  
Sbjct: 495 LDEAKQTVPQ 504


>gi|320178071|gb|EFW53051.1| ATP-dependent RNA helicase RhlB [Shigella boydii ATCC 9905]
          Length = 421

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E+L ++G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPKVVESLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APT ELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIADRKVNQPRALIMAPTHELAVQIHADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  + +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|285017902|ref|YP_003375613.1| ATP-independent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283473120|emb|CBA15626.1| probable atp-independent rna helicase protein [Xanthomonas
           albilineans]
          Length = 458

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 131/410 (31%), Positives = 202/410 (49%), Gaps = 12/410 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++   +   +   GY  +T VQ   L P L   DV+V A TGSGKT AFGL L
Sbjct: 1   MTDFDILSLSPALAPGIDALGYTTMTPVQAQSLPPILAGHDVIVQAPTGSGKTAAFGLGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV--HR 116
              L     R        AL + PTRELA QVG+++  L      +  V + G      +
Sbjct: 61  LHKLDPALVRA------QALVLCPTRELADQVGKQVRKLATGIANMKLVVLTGGMPLAPQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 +   +VVGTPGR+ +  R + L++  ++ +VLDEAD MLD+GF + I  I    
Sbjct: 115 LASLEAHDPQVVVGTPGRIQELARKRVLHLGGVRTLVLDEADRMLDMGFEEPIREIAGRC 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+ L+FSAT    I  LA+   KD   + +A              +   S R  A+ 
Sbjct: 175 DKHRQSLLFSATFPETIRALARELLKDPTEITVAGAESAPEIDQQFFEVD-PSYRQKAVA 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     ++++VFC+TR  V      L +  F  +AL G++ Q++R   L    +    
Sbjct: 234 GLLLRFAPESSVVFCNTRKEVDEVASSLQQFGFSALALHGDMEQRDRDEVLVRFVNRSCN 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +A+DVAARG+D+ DL  V++ EL ++ E   HR GRT RAG+ G+++ ++     +RA
Sbjct: 294 VLVASDVAARGLDVEDLAAVLNYELPTDTETYRHRIGRTARAGKHGLALSLVAPRELQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + L  E ++ + W  AP   A R     +     L +D  + D+ +  D+
Sbjct: 354 QALETEQSLPLRWSRAPLATA-RPAQLPQAAMVTLRIDGGKTDKLRPGDI 402



 Score = 65.4 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 55/187 (29%), Gaps = 11/187 (5%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
             + R E L R  N S     A  V A  +   D   +L   L  D+     +       
Sbjct: 276 EQRDRDEVLVRFVNRSCNVLVASDVAARGLDVEDLAAVLNYELPTDTETYRHRIGRTARA 335

Query: 409 AKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            KH           + RA     E+  P+                     ++        
Sbjct: 336 GKHGLALSLVAPRELQRAQALETEQSLPLRWSRA---------PLATARPAQLPQAAMVT 386

Query: 469 FSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLD 528
             +  G   K     ++  L   +G++  +IG I + P  ++V ++          ++  
Sbjct: 387 LRIDGGKTDKLRPGDILGALTGEAGLSGAAIGKIAIYPTRSYVAIARAQASKALAKLQAG 446

Query: 529 KGIQLKY 535
           K    ++
Sbjct: 447 KIKGRRF 453


>gi|145524966|ref|XP_001448305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415849|emb|CAK80908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 173/373 (46%), Gaps = 13/373 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F+ +PQ + EAL  +   + +++Q+AI+       DV+  A+TGSGKT+A+ L     
Sbjct: 104 QNFDFLPQNLQEALKAKSITSPSAIQQAIIPLIFEGHDVIAIAETGSGKTLAYALPGIMH 163

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A+       + P  L +APTRELA Q+  +          V   C+ G      +   
Sbjct: 164 MQAQPQ----ITGPRILVLAPTRELAQQIQTQ------YDLFVKTCCLFGGIQKPLQYFA 213

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +     V+             GL +  +  VVLDEAD MLD+GF D I  +L    K R+
Sbjct: 214 KPQTPKVIIATPGRLLDFIKDGLPLKSITQVVLDEADRMLDMGFEDQIRDVLKEVRKDRQ 273

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
            L FSAT    +  LA N   +        E     + +    L+    ++   ++    
Sbjct: 274 TLFFSATWPKEVQRLANNLCNEDPVFLQLGERGLSVNKNITQSLIISGGNKFEQLIEYFN 333

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  +VFC  +    +    L++H      L G+L Q +R   +Q  RDG A+  I 
Sbjct: 334 QIKDKKVLVFCQKKIDTQKLEYKLSQHGINARYLHGDLRQNQRDFIMQEFRDGSAKCLIT 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--MQRRAER 358
           T++A+RG+D+ D+++VI+ +   N E+ +HR GRTGRAG+KG ++  I  N    +  + 
Sbjct: 394 TNLASRGLDVSDVDIVINYDFPENIEDYIHRIGRTGRAGKKGEALSFIEPNDLDSKLKDD 453

Query: 359 LFREANVSVVWEP 371
           L +    S    P
Sbjct: 454 LIKVFKQSCQEIP 466


>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
          Length = 775

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 106/360 (29%), Positives = 184/360 (51%), Gaps = 9/360 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +  ++ + +   GY+  T VQ+A +   L ++D++  A TGSGKT A+ + +
Sbjct: 342 ITSFEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPV 401

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +            P  + +APTRELA+Q+ RE       + +   +  GG  V+
Sbjct: 402 MNILLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVN 461

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R +LQ G +I+V T GRL D +     + + +K ++LDEAD MLD+GF  DIE +++ 
Sbjct: 462 HQRSNLQAGCNILVATAGRLKDFLDRGIFDFTAVKFLILDEADRMLDMGFGPDIEKMVNH 521

Query: 176 SPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                    R+ MFSAT    +  LA  Y +D + V        + D++      +  D+
Sbjct: 522 PTMPPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDK 581

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++ +L+  G    IVF  ++ +       L  +  Q  ++ G+  Q +R  AL+  +
Sbjct: 582 RTKLMEVLQDLGDAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFK 641

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   + +AT+VAARG+D+  +  V++ +L ++ E  +HR GRTGR G  G S+    + 
Sbjct: 642 NGVRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFDEE 701


>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 402

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 103/358 (28%), Positives = 179/358 (50%), Gaps = 2/358 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   GY   T +Q   +   L  +D++ +AQTG+GKT +F L +   L    
Sbjct: 12  LCASLTDALDTLGYPKPTRIQTQAIPVILEGQDLIAAAQTGTGKTASFVLPMLEKLRH-- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  +++       +      GGV    +++ L  G  
Sbjct: 70  GQTQKKKRIRALILVPTRELAIQVDEKIKQYGQNLALRSLAMFGGVDEKTQKQALIEGLD 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    ++ +VLDEAD MLD+GF DDI  ILD  P+  + L+FS
Sbjct: 130 ILVATPGRLLDMYGQRAVYFEEIEMLVLDEADRMLDMGFIDDINKILDRLPENIQHLLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK+   +   ++IA++    S+I+   + V    +   + ++++ +    
Sbjct: 190 ATLSNKVRDLAKSAIHNPFEISIAAKQASKSNIEQWIITVDKDQKSALLSHLIKENQWDQ 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+   ++    L +      A     SQ  R   L+  + G+ +  ++T VAAR
Sbjct: 250 TLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLEDFKAGKIKYLVSTGVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+  L  V++ +L    +  +HR GRTGRA  KG ++ ++ ++  +    +     
Sbjct: 310 GIDIEALPRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 367


>gi|67483578|ref|XP_657009.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474243|gb|EAL51623.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 384

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 191/373 (51%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE+  +   + + + ++GY   + +Q+  + P  + +DV+  +Q+G+GKT  F + + 
Sbjct: 12  ETFESMGLKDELLKGIYQQGYTKPSGIQQKGIVPITKGRDVIAQSQSGTGKTATFSIGIL 71

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       S       + I+PTRELAVQ  R +  L     + V  CIGG S   + +
Sbjct: 72  QNVE------SNKREVQVIIISPTRELAVQSERVISGLSQYMAIQVRGCIGGKSEKEDIK 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  ++ GTPGR+   I+ + +N+ H+K +V+DEADEML+ GF   I  I    P K
Sbjct: 126 AIEKGCQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMLNKGFMPIIYDIFKYLPIK 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRDNAIVNI 238
           R++++ SAT++P +  +        + + I  +     +I    + +     + + +  I
Sbjct: 186 RQIVLCSATLTPDVIEIGTKIMNKPIEILIKRDEVTVEEIKQYFIEMEGEEQKFDTLCEI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+ R  V   T+ + +  F V+++  E+ QQER   + + R G  RV 
Sbjct: 246 YDSMTITQSVIFCNMRKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARGID+  + LVI+ ++  N E  +HR GR+GR GR G+++  + +N       
Sbjct: 306 ITTDVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMEELRD 365

Query: 359 LFREANVSVVWEP 371
           L R  +  +   P
Sbjct: 366 LERYYSTQINELP 378


>gi|67484682|ref|XP_657561.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56474830|gb|EAL52186.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 450

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 167/383 (43%), Gaps = 13/383 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +   Q +   L + G +  T +Q+  + P L   +VL  A+TGSGKT AF L +
Sbjct: 29  LNTFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPI 88

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA Q+  + +   A   + V   +GGV V R  
Sbjct: 89  IHHLSTDP------YTGFALVLTPTRELASQIADQFKAFGACINIRVVQVVGGVDVIRIL 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
             L    H+++ TPG+L   I     +    K ++LDEAD + D      DD++ I    
Sbjct: 143 HHLSGSPHVIIATPGKLVSLIDHLPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKF 202

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K     +FSAT    I  L      D   +    + +   + D   + +    +   + 
Sbjct: 203 SKTVTTGLFSATTDSLIPQLPALGLTDTKILITGEKQKLSDNCDQTYIFIPNKVKHCYLT 262

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   K  IVFC +        ++      +   L   L Q  R N L   R   A 
Sbjct: 263 Y---LCINKQCIVFCGSVLRTEVIFRMFKSMELKATVLHSALPQIARENNLNSFRSDEAS 319

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+A+RG+D+PD+ LVI+ ++    E+ +HR GRT RA RKG+++ ++ +    R 
Sbjct: 320 ILVATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRI 379

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
           + +  +  + +        + + 
Sbjct: 380 QSIESQLGIQLKEYKVDEEKVLN 402


>gi|212636402|ref|YP_002312927.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212557886|gb|ACJ30340.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 446

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 190/382 (49%), Gaps = 11/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +A+S+RGY  LT VQ  +L   +  +D++  AQTG+GKT AF L L +TL+ +
Sbjct: 7   DLHPHILDAVSKRGYKALTEVQCHVLPVAMLGQDIMACAQTGTGKTAAFALPLLNTLVGQ 66

Query: 66  NDRFSP----------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             + S            S    L + PTRELA+QV   ++          A   GG +++
Sbjct: 67  ALQQSKVAEEDTFNQYRSELKVLVLTPTRELAIQVADNIQAYAQCLPFKTAAVYGGANMN 126

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R+ +Q G  I+V TPGRL D I   GL++  +  +V+DEAD MLD+GF  DIE +   
Sbjct: 127 PQRKAVQAGVDILVATPGRLFDLIGQFGLDLGCVTHLVVDEADRMLDMGFVRDIERVKRL 186

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              + + L FSAT S  +  LA+     A      +     S I     LV    +   +
Sbjct: 187 VAVEHQTLFFSATYSEEVKALAQKM-LVAPEWIDVTTAATASKIAQEVYLVDKRRKAELL 245

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             ++  +  +  +VF S++ S       L     +     G+ +Q  R+ AL+  ++G+ 
Sbjct: 246 SELVGRNNWQQVLVFVSSKESAEHLHSELKLDGVKSAVFHGDKTQGSRNRALEEFKNGKL 305

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG +G ++  +    +  
Sbjct: 306 RVMVATDVAARGLDIEALPLVINLELPFAAEDYVHRVGRTGRAGLEGRAISFVSPQDKTM 365

Query: 356 AERLFREANVSVVWEPAPSVEA 377
              +     +++     P  E 
Sbjct: 366 LSEIETIIEMTLPCITLPGYEQ 387


>gi|17977678|ref|NP_524220.1| abstrakt [Drosophila melanogaster]
 gi|12643521|sp|Q9V3C0|DDX41_DROME RecName: Full=ATP-dependent RNA helicase abstrakt; Short=DEAD box
           protein abstrakt
 gi|6635811|gb|AAF19985.1|AF212866_1 abstrakt protein [Drosophila melanogaster]
 gi|7296891|gb|AAF52165.1| abstrakt [Drosophila melanogaster]
 gi|15291815|gb|AAK93176.1| LD28839p [Drosophila melanogaster]
 gi|220945834|gb|ACL85460.1| abs-PA [synthetic construct]
 gi|220955594|gb|ACL90340.1| abs-PA [synthetic construct]
          Length = 619

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 185/391 (47%), Gaps = 20/391 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L+ +G  N T +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 182 MK----FPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 237

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGV 112
             L +     F     P  L I P+RELA Q    ++             +   + +GG+
Sbjct: 238 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 297

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V      +  G HIVV TPGRL D +  K L +   + + +DEAD M+D+GF +D+  I
Sbjct: 298 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 357

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   A++     V +N+        ++  +   V    + 
Sbjct: 358 FSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 417

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +++ L+       ++F   +  V    + L     + VA+ G   Q+ERS A+   R 
Sbjct: 418 VYLLDCLQKTAPP-VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRV 476

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+  KG++  +I +  
Sbjct: 477 GKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 536

Query: 353 QR----RAERLFREANVSVV---WEPAPSVE 376
           ++      + L  E    V     E AP  E
Sbjct: 537 EQSVLLDLKHLLIEGKQEVPDFLDELAPETE 567


>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
 gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
           33030]
          Length = 440

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I EAL E G   + S+QE  L   L  +D++  A+TG GKT AFG+ L  
Sbjct: 7   TFAELGVAAEIVEALGESGIERVFSIQELTLPLALAGRDLIGQARTGMGKTFAFGVPLLD 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +         P AL I PTRELAVQV  +L    +KT V +    GG     +   
Sbjct: 67  RVFDDAAIEELDGTPRALVITPTRELAVQVSEDLTLAASKTPVRLTTIYGGRPYDEQLNA 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL D      L +  +  +VLDEADEMLDLGF  DI+ +  +  +  
Sbjct: 127 LEAGVDVVVGTPGRLLDLHERGDLVLDRVAILVLDEADEMLDLGFLPDIQRLWGALSQPL 186

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I         +   +R   A  ++ H        +    D+   +  +
Sbjct: 187 QTMLFSATMPAPILKLAREMMNKPVHIRAESADSSQLHDTTKQVVFVSHKMDKPEVVARV 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    I+F  T+ + +   + +A   F V ++ G+L Q  R  +L+  R G   + 
Sbjct: 247 LQADGRGRTIIFTRTKRTAAEVAEDVARRGFAVGSVHGDLGQSARERSLEAFRKGDVEIL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   +P   +HR GRTGRAGR G +V ++  +   + + 
Sbjct: 307 VATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGRTGTAVTLVGFDETGKWKI 366

Query: 359 LFREANVSVVWEP 371
           +  E  + +   P
Sbjct: 367 ISDELGLDMPEPP 379


>gi|86134570|ref|ZP_01053152.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85821433|gb|EAQ42580.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 450

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 116/461 (25%), Positives = 199/461 (43%), Gaps = 17/461 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E ++   +  A+ + G+ N T +QE   +     KDV+  AQTG+GKT A+ + + 
Sbjct: 1   MTFKELDLSNQLQYAIEDLGFENPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMMPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +FS    P  L + PTREL VQV  E+E L       V    GG +++ +++
Sbjct: 61  RDL-----KFSKQKHPRVLVLVPTRELVVQVVDEIEKLSKYINTRVLGVYGGTNINTQKQ 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  I+V TPGRL D      L +  ++ +V+DE D MLDLGFR  +  I D  P++
Sbjct: 116 AILQGQDIIVATPGRLYDLGLSNALKLKSIQKLVIDEVDVMLDLGFRFQLMNIFDILPER 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIV 236
           R+ ++FSAT++  +  L  ++ K+  +++IA      ++I+                  +
Sbjct: 176 RQNVLFSATMTEDVDELIYDFFKNPEKISIAVSGTPLNNIEQISYNVPNFFTKVNLLNHL 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
              +    K  I     R +   F  +      +   +    +Q  R  +++   +G  R
Sbjct: 236 LSDKETYNKVLIFVGFKRTADYLFKHLEEVFGSETCVIHSNKTQNYRIRSIRQFDEGNNR 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDV ARG+D  ++  VI+ +    PEN +HR GRTGRA + G ++ +     Q   
Sbjct: 296 ILVATDVMARGLDFDNVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILLSTAKEQEAK 355

Query: 357 ERLFREANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           E +    +  +     P    I  +  + +R  +D     +  G E         K +  
Sbjct: 356 EEIEALMDYKIPLLELPEEIEISTQLTEDERPKEDREQSKNRTGLEYVPGPAFHEKSEKN 415

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
                  +++  G    E          R     + R  K 
Sbjct: 416 S------KVNLGGSYRREIAKKYKKPKTRGDKNYNRRNKKK 450


>gi|256052028|ref|XP_002569581.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|227284279|emb|CAY16829.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 840

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 99/344 (28%), Positives = 172/344 (50%), Gaps = 3/344 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + EA+ + GY   T +Q   +   L  +DV+   +TGSGKT AF   L   ++ + 
Sbjct: 304 LDEPLMEAIRKAGYTQPTPIQAQAVPLILAGRDVIGIGKTGSGKTAAFLWPLIIHIM-DQ 362

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ +  APTRELA+Q+  E + L     + V    GG S+  +++  + G  
Sbjct: 363 PELKLGDGPIGVICAPTRELALQIYSEAKKLAKVYNLTVVCAYGGGSLWEQQKACEAGCE 422

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++ K  N+  +  +V DEAD+M +LGF   +  I +     R+ L+FS
Sbjct: 423 ILVCTPGRLIDIVKKKSTNLRRVTYLVFDEADKMFNLGFEPQVRSIANHVRPDRQTLLFS 482

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    +  LA++   D VR+        + DI     +    ++    +     R    
Sbjct: 483 ATFKRRLERLARDILLDPVRIIQGELGEANEDITQHVEIFDKIEQKWDWLTRNLVRLTTE 542

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + +       + L     +V+ + G++ Q +R+  +Q  +   A + +ATDVA
Sbjct: 543 GSVLIFVTRKVHSEEVAQKLKSRDLKVLLIHGDMHQSDRNTVIQAFKRQEAPILVATDVA 602

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +RG+D+P +  VI+ E++ + +   HR GRTGRAG KG +  + 
Sbjct: 603 SRGLDIPSIHNVINYEVARDIDTHTHRIGRTGRAGAKGTAYTLF 646


>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 753

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 129/499 (25%), Positives = 212/499 (42%), Gaps = 40/499 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 134 NLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLERLLYR 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQV   ++ L   T V  A+ +GG+S   +   L+   
Sbjct: 194 PRRI---PAIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALRARP 250

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      + +  L  +VLDEAD +L+LGF  ++  ++   PK+R+ ++
Sbjct: 251 DIVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQTML 310

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAIVNILRY 241
           FSAT++  ++ L        VR++     ++   +    V +     +D++  ++ +   
Sbjct: 311 FSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLALCTR 370

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   +      +   L G L+Q  R +AL+  R       IAT
Sbjct: 371 TFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVDFLIAT 430

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +E VI+    S+    +HR GRT RAGRKG +V  + +  +   + + +
Sbjct: 431 DVAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIAK 490

Query: 362 EAN-----------------VSVVWEPAPSVEAIRERDAQRILQDPL----FLDSIQGDE 400
           +A                    +        E ++    ++ L+          ++   E
Sbjct: 491 KAGSQLQNRQVAPTSIYNWRSKIEEMEDGVREVMQAERYEKALRKAEMEVNKAQNMMDHE 550

Query: 401 KKMVDVLLAKH------DPEKIAAGFLRIHRAGLCAP------EEITPVSLVSGRDRFRD 448
           K++      +           IAA   R    G  AP      EE         R R R+
Sbjct: 551 KEIFSRPKREWFLSTKEKKTTIAAAKARKEGKGEKAPAAMISVEEADEAKRKDKRKRDRE 610

Query: 449 DSRAFKVGGGSRDNFKGSS 467
            +   K         + + 
Sbjct: 611 KNMTRKQRRKLEAEREDAE 629


>gi|261193373|ref|XP_002623092.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
 gi|239588697|gb|EEQ71340.1| ATP-dependent RNA helicase DBP4 [Ajellomyces dermatitidis SLH14081]
          Length = 810

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 181/397 (45%), Gaps = 10/397 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +     LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L   
Sbjct: 51  FSDLPLSEPTLNGLSASHFKSLTDIQAKAIPHALKGRDILGAAKTGSGKTLAFLVPLLEL 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+  L
Sbjct: 111 LY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQEEQERL 168

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK+R+
Sbjct: 169 GRMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPKERQ 228

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT +  ++          + + V+  + +   + +    ++  L ++ + + + +
Sbjct: 229 TMLFSATQTKKVSDLARLSLRNPEYISVHETAASATPAKLQQNYIVTPLPEKLDTLWSFI 288

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRARV 297
           R       +VF S+   V    +        +  L     Q++ +           +   
Sbjct: 289 RSSLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSAAKHAC 348

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             +TD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + +    
Sbjct: 349 LFSTDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEAGML 408

Query: 358 RLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLF 392
           +   +  + +      S +   I+ +      +DP  
Sbjct: 409 KRLEQKKIPIEKINIRSKKQQSIKNQLQNMCFKDPAL 445


>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
 gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
          Length = 462

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 116/407 (28%), Positives = 194/407 (47%), Gaps = 8/407 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L +   L  +    
Sbjct: 51  PLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPILQHLFQQQHAN 110

Query: 70  SPASA----PLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
            P S+       L + PTRELA QV   ++         +      GGVS + +   L+ 
Sbjct: 111 KPLSSKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRG 170

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D I    + +  +K +VLDEAD ML LGF D++  +LD  PK ++ L
Sbjct: 171 GTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLDLLPKNKQTL 230

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  L +    D V + + S +        R   V   ++   + ++++ H 
Sbjct: 231 LFSATFPEQVQALTQELLNDPVEIQLQSADASTL--VQRVFTVNKGEKTALLAHLIKQHE 288

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A++F + + S       L++         G+  Q  R+  L+  + G   V IATD+
Sbjct: 289 WRQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLEAFKSGEIEVLIATDI 348

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I  +     + + ++ 
Sbjct: 349 AARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKKN 408

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            + +  E     EA    +A  I   P+      G +K+     L +
Sbjct: 409 KIRLEREQVEGFEADEVNEAFLIANKPMAKPEGSGKKKRKNKASLNE 455


>gi|5901872|gb|AAD55444.1|AF181659_1 BcDNA.GM05306 [Drosophila melanogaster]
          Length = 641

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|303288912|ref|XP_003063744.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454812|gb|EEH52117.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 577

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 115/423 (27%), Positives = 198/423 (46%), Gaps = 12/423 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   +     ++  GY  +T VQ   + P L  +DVL +A+TGSGKT+AF +   
Sbjct: 73  KTFASLSLSKPTMAGIATMGYETMTEVQARTIPPLLAGRDVLGAARTGSGKTLAFLVPSV 132

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +F P +    + + PTRELA+Q+    + L  K      + IGG +   E  
Sbjct: 133 ELLYH--AKFMPRNGAGVMILTPTRELALQIYNVTQQLMTKHSQTHGLIIGGANRRAEAE 190

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH++       S LK   +DEAD MLD+GF +++  I+   PK
Sbjct: 191 KLVKGVNLLVATPGRLLDHMQNTKGFTFSSLKIFCMDEADRMLDIGFEEEMRTIVKMIPK 250

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIV 236
            R+ ++FSAT +  +  LA+   K    + +         + ++    +V    R   + 
Sbjct: 251 DRQTMLFSATQTTKVEDLARLSLKSPTYIGVDDARAVSTATGVEQGYCVVPSEKRFLLLF 310

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  +VF S+  SV    ++L      V  + G+  QQ R+            
Sbjct: 311 TFLKKNLKKKVMVFFSSCNSVKYHAELLNYIDIPVSDIHGKQKQQRRTTTFFEFCKAERG 370

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR--AGRKGMSVFVIPQNMQR 354
           V + TDVAARG+D+PD++ +I  +   +P+  +HR GRT R   GR G ++  +      
Sbjct: 371 VLLCTDVAARGLDIPDVDWIIQFDPPDDPKEYIHRVGRTARGTDGR-GRALLFLIPEELA 429

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             + L + A V +     P+ + A  +   +++++   +L     D  +   +    H  
Sbjct: 430 FLKYL-KAAKVPLNEYEFPNKKIANVQSQLEKLVEKNYYLHQSARDAYRAYILAYNSHTL 488

Query: 414 EKI 416
           + +
Sbjct: 489 KDV 491


>gi|226292592|gb|EEH48012.1| ATP-dependent RNA helicase DED1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 687

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 192/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 197 ITAFTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 256

Query: 59  ASTLLAENDR---------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S  L +                + P AL + PTREL  Q+  E      +T +   V  
Sbjct: 257 LSKSLEKRGPDGDAPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 316

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    +++SH++ +VLDEAD MLD+GF   I
Sbjct: 317 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQI 376

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I           R+ LMFSAT  P I  LA+ + KD + +++        +I  R + 
Sbjct: 377 RRIVQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIE 436

Query: 226 VA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 437 CDSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 496

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 497 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLS 556

Query: 345 VFVIPQ----NMQRRAERLFREANVSVV 368
                +     + R    L ++AN  V 
Sbjct: 557 TAFFSRIKNFKIARSMVDLLKDANQEVP 584


>gi|46446899|ref|YP_008264.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400540|emb|CAF23989.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 407

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 194/382 (50%), Gaps = 8/382 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  +I +AL +  +   + +Q   +    +++D++  +QTGSGKT    + + + +  E
Sbjct: 21  NLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQTGSGKTATCAIPICNRVNTE 80

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      AL I PTRELA+Q   E + +    GV      GG     ++  L++G 
Sbjct: 81  LTDI------QALIIVPTRELALQYATETQKIGKYKGVKAFAIFGGEDSALQQSKLKHGV 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I  + +++SH++ ++LDEADEML +GF DD+ FI+       + L+F
Sbjct: 135 QVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVFIIQCLNHSHQTLLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  AI  LAK++ KD   VN+  E      +++  V      RD+ ++ +++ +   
Sbjct: 195 SATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCFVYCLAHQRDHELIQLIKENNPT 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AI+FC +R  V +  + L  HL  V  L   L+Q  R+      R G+ R+ +ATD+ A
Sbjct: 255 QAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFRTGKIRLLVATDIVA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D   +  V   +LS   +  +HRSGRTGR G+ G+ + ++          + ++   
Sbjct: 315 RGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLVTSRELPYLNAILKQIKQ 374

Query: 366 SVVWE--PAPSVEAIRERDAQR 385
              W   P P  +   +   +R
Sbjct: 375 EPRWIGCPPPEKQEAAKPRKRR 396


>gi|332362965|gb|EGJ40754.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK49]
          Length = 447

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 199/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G +G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLRGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|256087842|ref|XP_002580072.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665577|emb|CAZ36311.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 454

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 110/404 (27%), Positives = 192/404 (47%), Gaps = 23/404 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     I + +S  G+V  + +Q   +   LR+KD++  A+TGSGKT AF + + 
Sbjct: 4   KSFKELGVCNEICDVISTLGWVKPSEIQLKAIPAALRKKDIVGLAETGSGKTAAFAIPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL      S      AL + PTRELA+QV      L  K G+ V   +GG  V  + R
Sbjct: 64  QDLL------SKPRHNFALILTPTRELALQVKCLFMELGDKFGLKVVCLVGGQHVEDQVR 117

Query: 120 D--LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           D        IV      +      K L ++H++  VLDEAD+ML+  F   + FI+    
Sbjct: 118 DLKRLKFHVIVGTPGRVVYHLENTKELRLNHVRYFVLDEADQMLEDTFEQQLAFIITKLH 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             ++  ++SAT++  +  + K   K  V + ++S+  +   +D+  V +   ++D  ++ 
Sbjct: 178 PNKQTFLYSATMTQNVDKIRKVCTKSPVILEVSSKYSKVDKLDHAFVFIPDKEKDFYLIY 237

Query: 238 ---ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE----LSQQERSNALQMM 290
                +      +I+F ST     R   +L      + A S      + Q +R ++L   
Sbjct: 238 LLLSSKSADKSRSIIFTSTWRESFRIVAMLKSLADVISAASAPLNGVMQQDKRQSSLFDF 297

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMS 344
           R GR  + +ATD+A+RG+D PD++LVI+ ++        + +  +HR GRT RAGR G +
Sbjct: 298 RTGRVSILVATDLASRGLDFPDVDLVINYDVPRRPSWSDSAKAYIHRVGRTARAGRHGRA 357

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +  +      R + +    N  +   P P  + +  +  Q+++Q
Sbjct: 358 ITFVTPYSVTRLKAIESALNERIPQLPWPGTDCLDSQLRQQVIQ 401


>gi|41282082|ref|NP_571016.2| pl10 [Danio rerio]
 gi|37590512|gb|AAH59794.1| Pl10 [Danio rerio]
          Length = 688

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 190/384 (49%), Gaps = 24/384 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +   
Sbjct: 217 EIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQIYTDGPG 276

Query: 69  FS----------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            +                    P++L +APTRELA+Q+  E      ++ V   V  GG 
Sbjct: 277 EALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGA 336

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            + ++ RDL+ G H++V TPGRL D +    + + +   +VLDEAD MLD+GF   I  I
Sbjct: 337 DIGQQIRDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRI 396

Query: 173 LDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++          + +MFSAT    I  LA+++ +D + + +        +I  + V V  
Sbjct: 397 VEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEE 456

Query: 229 SDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           +D+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ++R  AL
Sbjct: 457 NDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEAL 516

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++   
Sbjct: 517 HQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 576

Query: 348 IPQ---NMQRRAERLFREANVSVV 368
                 N+ +    +  EA   V 
Sbjct: 577 FNDKNGNITKDLLDILVEAKQEVP 600


>gi|296237741|ref|XP_002763877.1| PREDICTED: ATP-dependent RNA helicase DDX3Y-like [Callithrix
           jacchus]
          Length = 647

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 166 IENFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 225

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 226 LSQIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPC 285

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD+MLD+GF 
Sbjct: 286 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFE 345

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 346 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 405

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            + V   D+ + +++I          +VF  T+         L        ++ G+ SQ+
Sbjct: 406 VIWVEDLDKRSFLLDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 465

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL+  R GR+ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 466 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 525

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 526 GLATSFFNEKNVNIAKDLLDLLVEAKQEVP 555


>gi|126664017|ref|ZP_01735011.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
 gi|126623966|gb|EAZ94660.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
          Length = 448

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 110/386 (28%), Positives = 183/386 (47%), Gaps = 10/386 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+  ++P+ + +AL E G+V+ T +QE   +  L  +D++  AQTG+GKT A+ L +
Sbjct: 1   MKTFQEFDLPKSLQKALDELGFVHATPIQEKSHSVILSGRDMMGIAQTGTGKTFAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +N+  +       + + PTREL VQV  E+E L     V      GGV+++ +R
Sbjct: 61  LKQWKFQNNESAR-----IVILVPTRELVVQVAEEVEKLTKYMSVRTLGIYGGVNINTQR 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+VGTPGR+ D      L    L+ +V+DE DE+L+LGFR  +  IL     
Sbjct: 116 KALAQGVDILVGTPGRVMDLGLDGVLRFDELQKLVIDEFDEILNLGFRTQLTSILSMMRG 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---SDRDNAI 235
           K++ ++FSAT++  +  +   Y +    V++A        I+     V            
Sbjct: 176 KKQNILFSATMTEEVDAMLDEYFEFPEEVSLAQSGTPLEQIEQIVYKVPNFLTKLNMLKH 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +        +  I   + R     F  +  E   Q   +    SQ  R N +   + G  
Sbjct: 236 LVRETETMERVLIFVNNKRIVDLVFETLDEEFPGQFGVIHSNKSQNYRLNTMASFQAGEL 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R  + TD+ ARG+D+ D+  VI+ + +  PE  +HR GRTGRA + G+++ ++  +    
Sbjct: 296 RGLVTTDIMARGLDISDITHVINLQFTEEPEKYMHRIGRTGRADKTGIAISLVSPSEVES 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRER 381
              +    +  +   P P    I ER
Sbjct: 356 KIEVELLMDTKIKEFPLPEDLKIEER 381


>gi|227829832|ref|YP_002831611.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
 gi|227456279|gb|ACP34966.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.S.2.15]
          Length = 360

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +   
Sbjct: 17  NMFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                          AL ++PTRELA Q+  E++ L     + V++      +     D 
Sbjct: 77  NST------------ALILSPTRELATQILDEIKKLGKYKQIDVSLI-----IGGMSYDD 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q  + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K  
Sbjct: 120 QRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               +      +T   +  +     V    +  +     +  V    +D+ + ++     
Sbjct: 180 GFFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLL---EE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++           +R+
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRI 354


>gi|307822012|ref|ZP_07652244.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
 gi|307736578|gb|EFO07423.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 182/378 (48%), Gaps = 7/378 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + +  A+ + G+   T VQ   +   L  KD+LVSA+TGSGKT AF L    
Sbjct: 11  SFSSLSLDEQLLSAVKKLGFEQPTPVQLQSIPLALEHKDLLVSAETGSGKTAAFLLPALH 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL      S  S   AL + PTRELA Q+ +  + L   T +   +  GG     ++  
Sbjct: 71  HLLTLP---SGKSGVRALILTPTRELAQQIFKHCQQLTEFTDLKTGLITGGDDFRLQQNM 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IV+ TPGR+ + +  +  + S+L+ ++LDEAD MLD+GF +D+  I +S   +R
Sbjct: 128 LRRNTEIVIATPGRVLELMEQEIPDFSNLEVLILDEADRMLDMGFSEDVLTIANSCNTQR 187

Query: 181 RMLMFSA--TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSA  T    I    +  +   V       +   +      +      +   ++ +
Sbjct: 188 QTLLFSATLTHFGVIKMADRVLKNHEVVALNTLHDGHRNIEQQIVLADDNDHKLKLLIWL 247

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      A+VF ++R         L     +V  L GE+ Q++R+  +++ R+G  ++ 
Sbjct: 248 LQNETYDKALVFTNSRIQADALRGPLRGQKLRVGVLHGEMDQKDRNRMMELFREGEVKIM 307

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARG+D+  + LVI+ ++  N  N +HR GRTGR    G+++ ++          
Sbjct: 308 LATDLAARGLDIKGINLVINFDVPRNGINYIHRIGRTGRVDELGLTIALVKHTEWNLMSG 367

Query: 359 LFREANVSVVWEPAPSVE 376
           + R             +E
Sbjct: 368 IERFLKQKFKHRNIKELE 385


>gi|237731652|ref|ZP_04562133.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
 gi|226907191|gb|EEH93109.1| ATP-dependent RNA helicase DbpA [Citrobacter sp. 30_2]
          Length = 457

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    E L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------AALFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++ + +           I+ +    +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQQNPLTI-EIDTVDALPAIEQQFFETSSHGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G AR
Sbjct: 234 KLLSQHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+  +I   +A+
Sbjct: 354 NILSEMLQLKLNWLTAPANGSILPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +       G      
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLTAPANGSILPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQNIAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|82539875|ref|XP_724294.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478891|gb|EAA15859.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 715

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 192/429 (44%), Gaps = 49/429 (11%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I   L+E+ +   T++Q+      L  KD++  A+TGSGKT+AF L  
Sbjct: 288 ITNFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPC 346

Query: 59  ASTLLAENDRFSPASAP--------------------------------------LALAI 80
              +L    +    +                                          L +
Sbjct: 347 LMHILKHKQKEMEENGVEPIKNNEVKLSENDNNDNNYDPDFEKEFQNDDSENRKTYGLIL 406

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTREL +QV  E++   ++  +      GGV  + +  +++ GA I+V TPGRL D++ 
Sbjct: 407 LPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLE 466

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT---TLA 197
              +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT    +       
Sbjct: 467 NGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDF 526

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            ++    +++  +      +      V  ++  +   +  +   +     ++FC T+ + 
Sbjct: 527 CSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNC 586

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L  H +  +++ G+  Q+ER   L   ++ R  + +ATDVA+RG+D+ ++ +VI
Sbjct: 587 DNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVI 646

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-----MQRRAERLFREANVSVVWEPA 372
           + ++ +  E+ +HR GRTGRAG KG S+   P +      QR A+ L +  N +    P 
Sbjct: 647 NYDIPNTIEDYIHRIGRTGRAGNKGKSILFFPYDYYVPQKQRFAKELVKLLNKTNQQVPK 706

Query: 373 PSVEAIRER 381
              E +  R
Sbjct: 707 ELREIVSTR 715


>gi|329925824|ref|ZP_08280569.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
 gi|328939612|gb|EGG35959.1| putative DEAD-box ATP-dependent RNA helicase CshA [Paenibacillus
           sp. HGF5]
          Length = 448

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/363 (31%), Positives = 190/363 (52%), Gaps = 6/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +   L+E G V  + VQ   + P L  KDVL ++QTG+GKT+A+ L +   +  E 
Sbjct: 11  IAEDLSSRLAEFGIVTPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQGIDPE- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L+    
Sbjct: 70  -----IKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLHPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  S
Sbjct: 125 LIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP    L K      V + I  E R  S +++   +    D+ + +  ++R++    
Sbjct: 185 ATVSPETAELVKKEMDQPVEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYNPDR 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +    ++     L        AL G+  +  RS  L   R+GR ++ +A+DVAAR
Sbjct: 245 AIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S
Sbjct: 305 GLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGIS 364

Query: 367 VVW 369
           +  
Sbjct: 365 IEE 367


>gi|50842805|ref|YP_056032.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840407|gb|AAT83074.1| putative ATP-dependent RNA helicase [Propionibacterium acnes
           KPA171202]
 gi|314923604|gb|EFS87435.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314966442|gb|EFT10541.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315092781|gb|EFT64757.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
 gi|315103751|gb|EFT75727.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315105899|gb|EFT77875.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
 gi|327327264|gb|EGE69040.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL103PA1]
          Length = 561

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 198/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 LRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++ ++   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 DATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|309361517|emb|CAP29330.2| hypothetical protein CBG_09775 [Caenorhabditis briggsae AF16]
          Length = 820

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 172/373 (46%), Gaps = 3/373 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+          +
Sbjct: 275 SFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH-TMD 333

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                    P+A+ + PTRELA+QV +E +         V+    GG    +       G
Sbjct: 334 QPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQNEG 393

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGR+ D ++ +  N      +V DEAD M D+GF   ++ I D     R+ LM
Sbjct: 394 AEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLM 453

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
           FSAT    +  LA++   D VR+        ++DI+ +  ++   D + + ++  L    
Sbjct: 454 FSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLVEFA 513

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   ++   T+   S       +     + L      Q   N   +    ++++ +ATDV
Sbjct: 514 SLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRKKSQILVATDV 573

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ ++  V++ +++ + +  +HR GRTGRAG +G +  ++ +        L +  
Sbjct: 574 AARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVGHLVKNL 633

Query: 364 NVSVVWEPAPSVE 376
                  P P ++
Sbjct: 634 ESVSQEVPKPLMD 646


>gi|157374733|ref|YP_001473333.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           sediminis HAW-EB3]
 gi|157317107|gb|ABV36205.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
           HAW-EB3]
          Length = 465

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 178/375 (47%), Gaps = 5/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L     ++  
Sbjct: 26  SLDTRLLKTLDHMGIEKPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAMQRII-- 83

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + R      P  L + PTRELA QV  +L  L A T       +GG + + + + L+   
Sbjct: 84  STRALSKRDPRVLILLPTRELANQVYSQLRLLVANTQYKAVKILGGENFNDQAKSLERDP 143

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
           H VV TPGRL DH+    L+++ L+ ++LDEAD MLDLGF D ++ I    D   ++  M
Sbjct: 144 HFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFVDQLKAINAAADHKRRQTLM 203

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +   +      A+  +        A             +   L  ++  + +IL+  
Sbjct: 204 FSATLDHNKINEIAAELLKDPMHVSIGAGNIENLDITQRIYLSDHLDHKEALLNHILKNE 263

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R    LAE  F   +LSG+L Q  R+  +     G   + + TD
Sbjct: 264 KNKQVIIFTATRQDTDRLATKLAEAGFNTASLSGDLKQNARNQIMDQFSRGLQDILVTTD 323

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        +++   
Sbjct: 324 VASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQVF 383

Query: 363 ANVSVVWEPAPSVEA 377
              +        +EA
Sbjct: 384 LRKTFEISTIDGLEA 398


>gi|313358754|gb|ADR51551.1| vasa-like protein variant 1 [Scylla paramamosain]
 gi|313358756|gb|ADR51552.1| vasa-like protein variant 2 [Scylla paramamosain]
 gi|313358758|gb|ADR51553.1| vasa-like protein variant 3 [Scylla paramamosain]
          Length = 632

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 188/384 (48%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  N+  V+ E +S+  +   T +Q+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 193 VTTFQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPM 252

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +L    E+  F   + P+ L +APTRELA+Q+ +E      +T +  +   GGV+ +
Sbjct: 253 LHYILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATN 312

Query: 116 RERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            + R ++    HI++ TPG+L   +    +++  LK +V DEAD MLDLGF DD+E ++ 
Sbjct: 313 FQLRRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVA 372

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                 +     +MFSAT    +   A  +  + + +        + D+    V VA  +
Sbjct: 373 HPDMPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFE 432

Query: 231 RDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +             +  +VF   +         L+ + F+ V L G   Q++R  AL 
Sbjct: 433 KRDKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGFRSVTLHGGRYQEQREEALS 492

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  + RV +AT VAARG+D+  +  VI+ +L  + +  +HR GRTGR G +G +V   
Sbjct: 493 AFRSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFY 552

Query: 349 PQ----NMQRRAERLFREANVSVV 368
                 N+ +   R+  +A   V 
Sbjct: 553 DPEQDLNLAKDLVRILTDAEQEVP 576


>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 411

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 197/382 (51%), Gaps = 3/382 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  GY + T +Q   +   L ++DV+  A TG+GKT AF L +   LLA 
Sbjct: 7   SLNSTLVNTLASLGYESPTPIQLEAIPTILAKRDVMAGAHTGTGKTAAFALPILHHLLAL 66

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +     +      AL + PTRELAVQV +        T + V +  GGVS+  +      
Sbjct: 67  SPLQELTAVRPVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIDAQVAVFNA 126

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +++ TPGRL DH+R   L++  L  +V DEAD MLD+GF D+I+ +L   P  R+ L
Sbjct: 127 GIDVLIATPGRLLDHLRQGALSLKQLSVLVFDEADRMLDMGFMDEIQAVLKQVPSDRQTL 186

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+  AI +L+K   +D   + +A  N   ++I+     V    +   + +++R   
Sbjct: 187 LFSATLDAAIFSLSKTLLRDPKLIEVAKRNTTAAEIEQVVYAVDADRKTELVSHLVRSKN 246

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  T+  V +  + L +      A  G+LSQ  R   LQ  + G+ +V +ATDV
Sbjct: 247 WHQVLIFSRTKQGVDKLVQQLNKADIITQAFHGDLSQGAREKVLQEFKQGKIQVLVATDV 306

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +L+ VI+ EL    E+ +HR GRTGRAG  G+++ +  Q      E +    
Sbjct: 307 AARGLDIVELKYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVEVVL 366

Query: 364 NVSVVWEPAPSVE-AIRERDAQ 384
           +  +  +  P  E    + D +
Sbjct: 367 DKRLPQQWLPGFEPDFNKMDTE 388


>gi|307702030|ref|ZP_07639038.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
 gi|307616675|gb|EFN95864.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
           mitis NCTC 12261]
          Length = 447

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 199/459 (43%), Gaps = 25/459 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L   +
Sbjct: 8   FKKYISEALEELKFTTPTEVQDKLIPIVLTGRDLVGESKTGSGKTHTFLLPIFQQLDEAD 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQN 123
           D      +  A+  AP+RELA Q+ +    + A + V V V           +  +   N
Sbjct: 68  D------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDKLASN 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  + +
Sbjct: 122 QPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFM 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +   
Sbjct: 182 VFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQLMQ 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+         L     +V  + G+++ +ER   +  +++      +ATD+
Sbjct: 242 PYLAMIFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDL 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L +  
Sbjct: 302 AARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELEK-- 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + + + P             ++++D  F D+   D +   +    K D E I     + 
Sbjct: 360 -LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVKKKK 405

Query: 424 HRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +      ++I        R   R ++RA          
Sbjct: 406 KKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|145355346|ref|XP_001421924.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582163|gb|ABP00218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 421

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 182/375 (48%), Gaps = 15/375 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F+    P+ +  AL  +GY   T +Q       L+ KDV+  A+TGSGKT  F L  
Sbjct: 2   FTTFDEAAFPKPLRAALKAQGYDAPTPIQAEAWPILLKGKDVVAIAKTGSGKTCGFLLPA 61

Query: 59  ASTLLAEND-RFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            ++++   D R+ P A  P  + +APTRELA+Q+  E        G   AV  GG +   
Sbjct: 62  LASIMQLLDGRWRPGAVTPTVIVLAPTRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGD 121

Query: 117 ERRDLQNGAHIVVGTPGRLCDH-----IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + R L++GA +VV TPGRL D           ++      VVLDEAD MLD+GF   I+ 
Sbjct: 122 QLRALRSGADVVVATPGRLNDFLEPPPGFTAPVSAVKASYVVLDEADRMLDMGFEPQIKK 181

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVAL 228
           I    P  R+ +MF+AT   A+  +A ++    + + I S   +   +  I     ++  
Sbjct: 182 IFKLCPSARQTVMFTATWPKAVQKIADSFTTKPIHIQIGSGGDKLTANKSITQTVEVLEE 241

Query: 229 SDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSN 285
            ++ +  V IL+         I+F  T+       + L +  F    A+ G+  Q ER  
Sbjct: 242 EEKFDRCVAILKKELGKDDTCIMFAGTKRRCDFLDRRLKQSGFSSAGAIHGDKDQYEREM 301

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            L   R GR  + +ATDVAARG+D+P +  V+  +     E+ +HR GRTGRAG++G + 
Sbjct: 302 VLDNFRRGRGNILVATDVAARGLDIPGVAAVLVYDFPLQVEDYVHRIGRTGRAGKEGKAF 361

Query: 346 FVIPQNMQRRAERLF 360
               ++ +  A  L 
Sbjct: 362 TFFTKDNRGAANELI 376


>gi|302788684|ref|XP_002976111.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
 gi|300156387|gb|EFJ23016.1| hypothetical protein SELMODRAFT_10661 [Selaginella moellendorffii]
          Length = 597

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 210/421 (49%), Gaps = 9/421 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   I +AL++RG VNL  +Q A+  P ++  D++  A+TG+GKT+AFG+ +   +  E 
Sbjct: 11  IDSRIVDALAKRGIVNLFPIQRAVFQPAMQGLDLIARAKTGTGKTLAFGIPILDNISREK 70

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F PA  P A+ +APTRELA QV  EL        VV     GGVS+  +RR L + 
Sbjct: 71  SSMQFRPAGTPRAIILAPTRELAKQVENELVLAAPHLSVVC--IYGGVSIEGQRRQLASS 128

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D +    L ++ +K  +LDEAD+ML +GF +++E I+   P +R  ++
Sbjct: 129 VEVVVGTPGRVIDMLERGDLRLNEVKFAILDEADQMLAVGFAEEVERIMQKLPLQRHTML 188

Query: 185 FSATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+   I  L   Y K+   ++      +        Y      L+        +  Y
Sbjct: 189 FSATMPSWIRNLTSKYLKNPTMIDLVGENEDKVAEGIKLYAVSTNDLAKNKLLADLLTVY 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF  T+        V++  +    AL G++SQ +R   L   RDGR  V +AT
Sbjct: 249 AKGGKAIVFTKTKRDTDDVAAVMSRSIGC-EALHGDISQYQREKTLSGFRDGRFNVLVAT 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+P+++L++H E+  + E  +HRSGRTGRAG+KG  + +   N +R    +  
Sbjct: 308 DVAARGLDIPNVDLIVHYEVPGDSETFVHRSGRTGRAGKKGTCILMYTLNQKRVLRTIES 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIAAGF 420
           E          P+ E +    +    +    +   +          LL +     +AA  
Sbjct: 368 EVGCKFEAIGPPAAEDVLASSSDHASESIKSVHPDLAKLFLPAAQKLLEEQGVNALAAAM 427

Query: 421 L 421
            
Sbjct: 428 A 428


>gi|160331647|ref|XP_001712530.1| rrp3 [Hemiselmis andersenii]
 gi|159765979|gb|ABW98205.1| rrp3 [Hemiselmis andersenii]
          Length = 398

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 105/399 (26%), Positives = 190/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +   + +        +   T +Q  ++   L  +D++  AQTGSGKT+A+ L +
Sbjct: 1   MFSFDKLGISKELCRICKANNFFIPTKIQAKVIPHALNGRDIIGYAQTGSGKTIAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L          +A  ++ + P+RELA Q+    E      G+ + V +GG+    ++
Sbjct: 61  IQNL------VKKKTAFFSIILVPSRELAFQIASYFEAFGNIFGIKIVVLVGGLENFSQK 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HI++ TPGRL +H+       I  L+ +V+DEAD +  L F+ +   I    P
Sbjct: 115 ALLSLNPHILICTPGRLIEHLEKFLKNKIKKLEILVIDEADRLFQLDFKKEFSIIFSELP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K ++ L FSAT+S  +  L KN  K+ V++ I  + +    +    + +    +D   + 
Sbjct: 175 KNKQSLFFSATMSLNLENLQKNNMKNPVKIQINRKYKVVKTLQQNYIFIPQKLKDCYFIY 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +       + +VF  T+    + T +     F    L G ++Q +R   LQ  R G+ ++
Sbjct: 235 LCNEFNGSSILVFVDTQKCAEKKTLLAKFLGFNAEYLHGGMNQNKRLEILQKFRFGKIKI 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+A+RG+D+P+++LV++ +L    +  LHR GRT RAG+ G ++ ++ Q      +
Sbjct: 295 LIATDLASRGLDIPNVDLVLNYDLPHLAKEYLHRVGRTARAGKSGRTINIVTQYDIHLCQ 354

Query: 358 RLFREANVSVVWEPAPSVEA-IRERDAQRILQDPLFLDS 395
           ++        +          I E+   ++ Q   FL S
Sbjct: 355 KIETLVQQKFILLNFKLAHVLILEQTVDKMKQKVNFLIS 393


>gi|187608185|ref|NP_001119895.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
 gi|169154730|emb|CAQ14635.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 196/395 (49%), Gaps = 27/395 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 222 IESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPV 281

Query: 59  ASTLLAENDR-----------------FSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101
            S + +E                          P++L +APTRELA+Q+  E      ++
Sbjct: 282 LSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRS 341

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
            V   V  GG  + ++ RDL+ G H++V TPGRL D +    + + + K +VLDEAD ML
Sbjct: 342 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRML 401

Query: 162 DLGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D+GF   I  I++          + +MFSAT    I  LA+++ ++ + + +        
Sbjct: 402 DMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSE 461

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +I  + V V  +D+ + ++++L   G  +  +VF  T+         L    +   ++ G
Sbjct: 462 NITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHG 521

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           + SQ++R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTG
Sbjct: 522 DRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 581

Query: 337 RAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           R G  G++         N+ +    +  EA   V 
Sbjct: 582 RVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVP 616


>gi|327459301|gb|EGF05647.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1]
 gi|327490518|gb|EGF22299.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1058]
 gi|332364598|gb|EGJ42367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1059]
          Length = 447

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKMRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLHGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFTP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|194757571|ref|XP_001961038.1| GF13667 [Drosophila ananassae]
 gi|190622336|gb|EDV37860.1| GF13667 [Drosophila ananassae]
          Length = 782

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 120/477 (25%), Positives = 213/477 (44%), Gaps = 20/477 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A  ++     P    I E+   ++      + +I  +E+    +   +    K     L
Sbjct: 521 NAESTIKNRIIPP--EIIEKYRNKLTSLEPEIQNILEEEQAERQLAKTEQQLSKTERKLL 578

Query: 422 ------------RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                       +  R    A   +TP               A K            
Sbjct: 579 GQSNERRGWFQTKKQREDEKARLALTPADEEKPAGPKGKGKGAVKRKRPEYGGDGED 635


>gi|225680888|gb|EEH19172.1| ATP-dependent RNA helicase ded1 [Paracoccidioides brasiliensis
           Pb03]
          Length = 686

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 192/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N  + + +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   +
Sbjct: 197 ITAFTNPPLHEHLLSNIILSRYTVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPI 256

Query: 59  ASTLLAENDR---------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
            S  L +                + P AL + PTREL  Q+  E      +T +   V  
Sbjct: 257 LSKSLEKRGPDGDVPRGLGRQSKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVY 316

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + R L  G +++V TPGRL D +    +++SH++ +VLDEAD MLD+GF   I
Sbjct: 317 GGAEMGNQLRQLDQGCNVLVATPGRLVDMMERGRISLSHIQYLVLDEADRMLDMGFEPQI 376

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I           R+ LMFSAT  P I  LA+ + KD + +++        +I  R + 
Sbjct: 377 RRIVQGSDMPDKHLRQTLMFSATFPPDIQKLAEEFLKDHIFLSVGRVGSTSENITQRVIE 436

Query: 226 VA-LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                D+D+A+++IL        +VF  T+      +  L +H     A+ G+ +Q+ER 
Sbjct: 437 CDSDKDKDSALLDILCSDSTGLTLVFVETKRQADMLSDFLLDHRLPATAIHGDRTQRERE 496

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL++ R GR  + +AT VAARG+D+P++  VI+ +L +  ++ +HR GRTGRAG  G+S
Sbjct: 497 RALELFRTGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGLS 556

Query: 345 VFVIPQ----NMQRRAERLFREANVSVV 368
                +     + R    L ++AN  V 
Sbjct: 557 TAFFSRIKNFKIARSMVDLLKDANQEVP 584


>gi|332091754|gb|EGI96834.1| ATP-independent RNA helicase dbpA [Shigella boydii 5216-82]
          Length = 457

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G  +   
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQLFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSLHQPSSCVVFCNTQKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     +++ W+  P   +I   +A+
Sbjct: 354 NIISDMLQITLNWQTPPVNSSIVPLEAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   +   + +   V        
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQITLNWQTPPVNSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQDGK 445


>gi|328706401|ref|XP_001950362.2| PREDICTED: putative ATP-dependent RNA helicase Pl10-like
           [Acyrthosiphon pisum]
          Length = 681

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 192/391 (49%), Gaps = 23/391 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++I    +I   ++   Y   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 194 IDTFDDIKLTDIIRMNIALTRYDTPTPVQKYAIPIIVGRRDVMACAQTGSGKTAAFLVPI 253

Query: 59  ASTLLAENDRF--------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +  +            S    PL L +APTRELA Q+  E +    ++ V   V  G
Sbjct: 254 LNQIYEKGPAAYNVGPKLQSRRKYPLGLILAPTRELATQIYDEAKKFAYRSRVRPCVVYG 313

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  V  + RDL+ G H++V TPGRL D +    + +   + +VLDEAD MLD+GF   I 
Sbjct: 314 GSHVMDQIRDLEQGCHLLVATPGRLVDMLERGKIGLDFCRYLVLDEADRMLDMGFETQIR 373

Query: 171 FILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I++             MFSAT    I  LA+++  + + + I        +I  + V V
Sbjct: 374 RIVEKDSMPPPGDRQTLMFSATFPKEIQMLARDFLDNYIFLAIGRVGSTSENITQKIVWV 433

Query: 227 ALSDRDNAIVNILRYHGAKN------AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              ++ + ++++L     ++       +VF  T+       + L  + + V ++ G+ +Q
Sbjct: 434 EDRNKRSYLLDLLNATPIRSKPAESLILVFVETKKGADSLEEFLYSNGYPVTSIHGDRTQ 493

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER +AL+  R G   V +AT VAARG+D+P +  VI+ +L S+ E  +HR GRTGR G 
Sbjct: 494 REREDALKSFRSGNTPVLVATAVAARGLDIPHVTHVINYDLPSDVEEYVHRIGRTGRMGN 553

Query: 341 KGMSVFVI---PQNMQRRAERLFREANVSVV 368
            G++        +N+ R    L  E+   + 
Sbjct: 554 LGLATSFFNDKNRNLTRDLMELITESKQELP 584


>gi|322392273|ref|ZP_08065734.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
 gi|321144808|gb|EFX40208.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           peroris ATCC 700780]
          Length = 407

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 27/422 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + I EAL E  +   T VQE ++   L  +D++  ++TGSGKT  F L +   L  E+
Sbjct: 8   FKKYIEEALEELKFTTPTEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLDEES 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQN 123
           D      +   +  AP+RELA Q+ +    +   + V + V           +  +   N
Sbjct: 68  D------SVQVVITAPSRELATQIYQAARQIAGHSEVEIRVANYVGGTDKARQIDKLASN 121

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIV+GTPGR+ D ++   L I   +  V+DEAD  LD+GF + ++ I  S PK  + +
Sbjct: 122 QPHIVIGTPGRIYDLVKSGDLAIHKAQTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFM 181

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +   
Sbjct: 182 VFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELTQVMQ 241

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+         L     +V  + G+++ +ER   +  +++      +ATD+
Sbjct: 242 PYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVATDL 301

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L +  
Sbjct: 302 AARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELEK-- 359

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
            + + + P             ++++D  F D+   D +   +    K D E I  G ++ 
Sbjct: 360 -LGIKFTP-------------KVVKDGEFQDTYDRDRRANREKKQEKLDIEMI--GLVKK 403

Query: 424 HR 425
            R
Sbjct: 404 KR 405


>gi|167584515|ref|ZP_02376903.1| ATP-dependent RNA helicase DbpA [Burkholderia ubonensis Bu]
          Length = 464

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 139/405 (34%), Positives = 205/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSTLPLTPATLANLAQLGYADMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGTLALDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGCIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    DA   L  P+    I G  K  + 
Sbjct: 362 QALKREVEWHPLAELKA----DASEPLLPPMETLQILGGRKDKIR 402



 Score = 54.6 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
               S           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 377 KADASEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 436

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 437 RGIARDALRKLNAGKIKGKRVKVRLMD 463


>gi|157737778|ref|YP_001490462.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
 gi|157699632|gb|ABV67792.1| ATP-dependent RNA helicase DbpA [Arcobacter butzleri RM4018]
          Length = 454

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 207/379 (54%), Gaps = 11/379 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+ +   + L    Y  LT +QE  +   L+ KD++  A+TGSGKTVAF L + 
Sbjct: 1   MQFSELNLSKEFLQNLDSLEYKTLTLIQEKTIPDALQNKDLIAKAKTGSGKTVAFCLPIV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
           + L A+  +        AL +APTRELA Q+ + L  L      V V    GGV    + 
Sbjct: 61  NKLKAKEFKI------QALILAPTRELANQIAQNLRNLSRHIHNVKVLTLCGGVPFKPQV 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             LQ+ AHIVV TPGR+  HI+ K +N+ ++   VLDEAD+MLD+GF DDI  I+++ PK
Sbjct: 115 VSLQHNAHIVVATPGRVLKHIKEKNINLENISTFVLDEADKMLDMGFYDDIMEIIENLPK 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ ++FSAT    I T A N  K+ +   I+ E       + +   V  S++   I  +
Sbjct: 175 NRQTMLFSATYEKNIETFASNILKNPIYKEISDEKEILI--NQKFYEVTPSEKTALIPAL 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + ++ AK  ++FC+ + +  +    L +    ++ L  +L Q++R   + +  +    + 
Sbjct: 233 ISHNQAKTTLIFCNMKITCEKLADDLYDLGLDILTLHSDLEQKQRDETMVLFSNKSYPIL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVA+RG+ + D++LVI+ +LS + +   HR GRT RAG+ G+++ +  +N   + E 
Sbjct: 293 IATDVASRGLHIDDVDLVINYDLSLDEKIHTHRIGRTARAGKGGLAISLFTENEIDKFE- 351

Query: 359 LFREANVSVVWEPAPSVEA 377
           + +E   ++  E    ++ 
Sbjct: 352 IIKEKFNNIKIENPKDIKD 370



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           S +         ++ G KQK     ++  L   +G+    IG I V    ++  V +D +
Sbjct: 373 SFEINSNFRTVFINGGKKQKLRKGDILGALISEAGLKSDDIGKIDVMDFCSYAAVKSDKI 432

Query: 519 DLLRRTVKLDKGIQLKYLGGEK 540
             +  T K  +     Y+  EK
Sbjct: 433 SNIFSTSKSMRIKGKYYIIIEK 454


>gi|124481673|gb|AAI33163.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 [Danio rerio]
          Length = 709

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 112/395 (28%), Positives = 193/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 222 IESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPV 281

Query: 59  ASTLLAENDR-----------------FSPASAPLALAIAPTRELAVQVGRELEWLYAKT 101
            S + +E                          P++L +APTRELA+Q+  E      ++
Sbjct: 282 LSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRS 341

Query: 102 GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML 161
            V   V  GG  + ++ RDL+ G H++V TPGRL D +    + + + K +VLDEAD ML
Sbjct: 342 RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRML 401

Query: 162 DLGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D+GF   I  I++          + +MFSAT    I  LA+++ ++ + + +        
Sbjct: 402 DMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSE 461

Query: 218 DIDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +I  + V V  +D+ + ++++          +VF  T+         L    +   ++ G
Sbjct: 462 NITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHG 521

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           + SQ++R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTG
Sbjct: 522 DRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 581

Query: 337 RAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           R G  G++         N+ +    +  EA   V 
Sbjct: 582 RVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVP 616


>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
 gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
          Length = 446

 Score =  180 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + ++   +   T +Q+  +   +  KD+L S++TGSGKT+AF L     +    
Sbjct: 8   LDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY--R 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  L + PTRELA QV  +L  L A T     + +GG + + + + L+N   
Sbjct: 66  SKPFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPM 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGRL DH+  +  ++  L+ ++LDEAD +LDLGF   +  I    +   ++  M 
Sbjct: 126 FVVATPGRLADHLEHRSTHLDGLEMLILDEADRILDLGFEAQLRRINEAANHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   S  +   ++            S            +   L  +   +  IL    
Sbjct: 186 SATLDHSDVVEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKILETQD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TD+
Sbjct: 246 YKQVIIFTATRADTDRLTAELNERKLKAVALSGSLNQNQRNSIMSQFERTCHKILVTTDI 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++ LVI+ ++  + E  +HR GRTGRAG KG +V ++     +    +    
Sbjct: 306 ASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSFNNVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     +E
Sbjct: 366 KQKIEFTTIEGLE 378


>gi|300176370|emb|CBK23681.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 171/370 (46%), Gaps = 9/370 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + I + L E+G+   + VQ   +   L  KD+L  ++ G+GKT A+ +   + 
Sbjct: 36  FEKYGLKEEIMKVLCEKGWERPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIPCMNQ 95

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + P RELA+Q  R +        V    C GG  +  +   L
Sbjct: 96  IDPKE------RVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQPLADDLYRL 149

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G H++VGT  R+ D  R    ++SH K +VLDEAD+ML   FR  +E ++   P + +
Sbjct: 150 RRGVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAYLPAEHQ 209

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+ SAT    + + A  Y  + V +N          I    V +    + NA+  +   
Sbjct: 210 TLLLSATFPSTVRSFAAEYMHEPVMINTM-NELMLKGITQYYVYLEERQKVNALHTLFSK 268

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++ A V    K + +  +    +   + Q +R+        G AR  + T
Sbjct: 269 LEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLVCT 328

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARG+++  + +VI+ +L  + E  LHR GR+GR G  G++V  I    +     + +
Sbjct: 329 DLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTIEQ 388

Query: 362 EANVSVVWEP 371
           E ++ V   P
Sbjct: 389 ELDIEVQPFP 398


>gi|215486637|ref|YP_002329068.1| ATP-dependent RNA helicase DbpA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966726|ref|ZP_07780944.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
 gi|215264709|emb|CAS09083.1| ATP-dependent RNA helicase, specific for 23S rRNA [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312288190|gb|EFR16092.1| ATP-independent RNA helicase dbpA [Escherichia coli 2362-75]
          Length = 457

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 196/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L   +               L + PTRELA QV  EL  L        +    GG     
Sbjct: 61  LLQQIDVS------LFQTQGLVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I    A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLKAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLK 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|6118254|gb|AAF04040.1|AF187729_1 DEAD-box protein abstrakt [Drosophila melanogaster]
          Length = 614

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 113/391 (28%), Positives = 185/391 (47%), Gaps = 20/391 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L+ +G  N T +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 177 MK----FPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIM 232

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGV 112
             L +     F     P  L I P+RELA Q    ++             +   + +GG+
Sbjct: 233 FALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGL 292

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            V      +  G HIVV TPGRL D +  K L +   + + +DEAD M+D+GF +D+  I
Sbjct: 293 PVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 352

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                 +R+ L+FSAT+   I   A++     V +N+        ++  +   V    + 
Sbjct: 353 FSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 412

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +++ L+       ++F   +  V    + L     + VA+ G   Q+ERS A+   R 
Sbjct: 413 VYLLDCLQKTAPP-VLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRV 471

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+  KG++  +I +  
Sbjct: 472 GKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 531

Query: 353 QR----RAERLFREANVSVV---WEPAPSVE 376
           ++      + L  E    V     E AP  E
Sbjct: 532 EQSVLLDLKHLLIEGKQEVPDFLDELAPETE 562


>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 449

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 183/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ Q + ++L   G    T++QE  L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRALTKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSS 176
            L    H +V TPGR+ DH+  K L ++ L+ +VLDEAD MLDLGF   ++ I    D  
Sbjct: 119 ALAKEPHFIVATPGRIADHLEQKNLFLNGLELLVLDEADRMLDLGFAPQLKAINAAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +   S      A   +  +     A+            +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHSEINEIAAALLKNPSHVAIGAAHTEHQDITQRIYLCDHLDHKEALLT 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L     K  I+F +TRA   R    L+   F   ALSGEL Q  R+  +     G+ +
Sbjct: 239 RLLSDETHKQVIIFTATRADTERLASKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDNF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++      +        +EA
Sbjct: 359 KKVQLFLRKTFEISVIQGLEA 379


>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
 gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
          Length = 821

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 183/380 (48%), Gaps = 11/380 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     I +A+ ++GY   T +Q   L   L   DV+  A+TGSGKT AF + +   
Sbjct: 55  FESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPMLEK 114

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A     SP     AL ++PTRELA+Q  +  + L   T + + V +GG S+  +   L
Sbjct: 115 LRAH----SPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQL 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD + ++GF + +  IL    + R
Sbjct: 171 SKNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELR 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNI 238
           + L+FSAT+   +   AK   KD + V + +E +   D+      +   ++      +  
Sbjct: 231 QTLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLR 290

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  +VF ST+  V    +VL      +  + G + Q  R   +   R  +  + 
Sbjct: 291 EVVSSEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMIL 350

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+P L+ V++ +  + P+  +HR GR  RAGR G +   +  +       
Sbjct: 351 LVTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLD 410

Query: 359 LFREANVSVVWEPAPSVEAI 378
           L     +S    PAP+ E I
Sbjct: 411 L--HLFLSKPVRPAPTEEDI 428


>gi|291613137|ref|YP_003523294.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
 gi|291583249|gb|ADE10907.1| DEAD/DEAH box helicase domain protein [Sideroxydans lithotrophicus
           ES-1]
          Length = 475

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 130/405 (32%), Positives = 201/405 (49%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L +  Y  +T +Q   L   L   D++  A+TGSGKT AF L L + 
Sbjct: 20  FNELPLSPALLANLQQLEYRTMTPIQAESLPITLAGNDLIAQAKTGSGKTAAFALPLLTN 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           A  A+ + PTRELA QV +EL  L      +  + + G S  R +RD 
Sbjct: 80  LNP------RRFAVQAMVLCPTRELADQVTQELRRLARFADNIKILSLVGGSTMRPQRDS 133

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            ++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI F++   P +R
Sbjct: 134 LEHGAHIVVGTPGRIMDHLERGSLKLDALNTLVLDEADRMLDMGFYDDIAFVVKHCPAQR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT    I  LA+ + +    V +  ++        R   V   +R  A+  +L+
Sbjct: 194 QTMLFSATYPEGIARLAQKFMRKPQEVKLPEQHEGSKI-RQRFYEVKHEERLQAVATLLK 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + + FC+T+        VL       + L+G++ Q+ER   L    +    V +A
Sbjct: 253 HYRPVSTLAFCNTKQQCRDLLDVLHAEGIHALTLNGDMEQRERDQVLIQFANRSCSVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA  +G ++ +       R   + 
Sbjct: 313 TDVAARGLDIAQLEAVINVDVTPDPEIHIHRIGRTGRADAEGWALSLASPADMHRISNIA 372

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       W    SV    +R   + L  P+    I G  K+ + 
Sbjct: 373 KMVGSEPEWHTLESV----KRANDKPLIPPMVTLQILGGRKEKIR 413



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
                +          +  G K+K     ++  L   +G  R+ +G I V    T+V   
Sbjct: 388 KRANDKPLIPPMVTLQILGGRKEKIRPGDVLGALTGEAGFTREQVGKITVTDMSTYVAVA 447

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLGG 538
             ++ + V  L       K ++++ L  
Sbjct: 448 RNIAREAVKRLSAGKVKGKTVKVRALED 475


>gi|167381238|ref|XP_001735636.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165902329|gb|EDR28186.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 450

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 102/383 (26%), Positives = 167/383 (43%), Gaps = 13/383 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +   Q +   L + G +  T +Q+  + P L   +VL  A+TGSGKT AF L +
Sbjct: 29  LNTFDGLGIKQFLLPTLKQFGIIKPTKIQQLCIPPLLSFHNVLGGAETGSGKTAAFALPI 88

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA Q+  + +   +   + V   +GGV V R  
Sbjct: 89  IHHLSTDP------YTGFALVLTPTRELASQIADQFKVFGSCINIRVVQVVGGVDVIRIL 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSS 176
             L    H+V+ TPG+L   I     +    K ++LDEAD + D      DD++ I    
Sbjct: 143 HHLSGSPHVVIATPGKLVSLIDHLPFSFDSAKFLILDEADRLFDPSTGMLDDVQKIRSKF 202

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K     +FSAT    I  L      D   +      +   + D   + +    +   + 
Sbjct: 203 SKTVTTGLFSATTDSLIPQLPALGLADTKILITGERQKLSDNCDQTYIFMPNKVKHCYLT 262

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   K  IVFC +        ++      +   L   L Q  R N L   R G A 
Sbjct: 263 Y---LCINKQCIVFCGSVLRTEVIFRMFKSMEIKATVLHSALPQIARENNLNSFRSGEAL 319

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATD+A+RG+D+PD+ LVI+ ++    E+ +HR GRT RA RKG+++ ++ +    R 
Sbjct: 320 ILVATDLASRGLDIPDVPLVINYDVPHTAEDYIHRVGRTARANRKGLAITLVDEYESDRI 379

Query: 357 ERLFREANVSVVWEPAPSVEAIR 379
           + +  +  V +        + + 
Sbjct: 380 QSIESQLGVQLKEYKVDEEKVLN 402


>gi|161503259|ref|YP_001570371.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864606|gb|ABX21229.1| hypothetical protein SARI_01328 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 457

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 195/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLKVLPTAQLNNLNELGYLEMTPVQAASLPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVS------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGV 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKRTVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT    I  ++   Q+  +             I+ +    +  ++ + + 
Sbjct: 175 PATRQTLLFSATWPETIAAISGRVQQQPM-HIDIDTVDALPAIEQQFFETSAQEKISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAAGQSALALHGDLEQRDRDQTLVRFTNGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELVVNYELAWDPEAHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W  AP+ + +    A+
Sbjct: 354 NILSEMLQLKLNWLNAPARQPLLPLAAE 381



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEAHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKACK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|308050782|ref|YP_003914348.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
 gi|307632972|gb|ADN77274.1| DEAD/DEAH box helicase domain protein [Ferrimonas balearica DSM
           9799]
          Length = 444

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 109/372 (29%), Positives = 180/372 (48%), Gaps = 4/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL++ GY   T++Q A+L   L E+D+L SA TG+GKT A+ L     LL  
Sbjct: 7   DLDPRLEKALAKSGYTKPTTIQRAVLEAALEERDILASAPTGTGKTAAYLLPALQHLLDF 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R   A     L + PTRELA QV      L A T + +   +GG     +   L+   
Sbjct: 67  PRR--EAGHARVLVLTPTRELAQQVEAYGRKLLAGTQLSIGAIVGGKDYQHDADLLKQNM 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL  ++  +  +   ++ +V+DEAD MLD+GF   ++ I   +  +++ ++F
Sbjct: 125 DILVATPGRLIMYLEDEKFDPRQVEIMVIDEADRMLDMGFMPVVDRIAAETRWRKQTMLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNI--ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+  A          +           + +     Y      +  +   +  +L    
Sbjct: 185 SATLEGAGLDNFVRELLNDPVHCDAKPPRSERKKITQYYYRADDMDHKFKLLKRLLADPE 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F  TR   +     L     +   L G + Q +R +AL+  R+GR +V +ATDV
Sbjct: 245 CTRAMIFTKTRDRATELHAKLFAAKIRTAVLQGAMVQGKRDDALERFREGRVQVLVATDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+ ++  VI+ +L    E  LHR GRT RAG KGM++ ++  +     +R+ R  
Sbjct: 305 AARGIDIANVTHVINFDLPRTSEVYLHRIGRTARAGAKGMALNLVEAHDMPMLDRIQRYI 364

Query: 364 NVSVVWEPAPSV 375
           +  +      S+
Sbjct: 365 DEPIKVRVIESL 376


>gi|301775045|ref|XP_002922942.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Ailuropoda
           melanoleuca]
 gi|281344914|gb|EFB20498.1| hypothetical protein PANDA_011982 [Ailuropoda melanoleuca]
          Length = 669

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 211/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++      A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 176 TSFASLSNLVNEHTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 235

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 236 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 293

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 294 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 353

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 354 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 413

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 414 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 473

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 474 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 532

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 533 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 590

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 591 SHSLKQI 597


>gi|15222526|ref|NP_174479.1| STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent
           helicase/ helicase/ nucleic acid binding [Arabidopsis
           thaliana]
 gi|75333350|sp|Q9C551|RH5_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase, putative [Arabidopsis thaliana]
 gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase, putative [Arabidopsis thaliana]
 gi|19347812|gb|AAL86356.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|21436171|gb|AAM51373.1| putative p68 RNA helicase [Arabidopsis thaliana]
 gi|332193302|gb|AEE31423.1| DEAD-box ATP-dependent RNA helicase 5 [Arabidopsis thaliana]
          Length = 537

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 198/397 (49%), Gaps = 15/397 (3%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   N+P+ + +      +   + +Q       L  +D++  A+TGSGKT+AFG+  
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172

Query: 59  ASTLLAENDRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +L +N +    S    P  L ++PTRELAVQ+   L       G+      GG S  
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   +++G  IV+GTPGRL D I    L +S +  VVLDEAD MLD+GF + + FIL +
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN 292

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSD 230
           + K R+M+MFSAT    +  LA+ +        I      + N     I       A   
Sbjct: 293 TNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQ 352

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R  A++           +VF   +    R  + L +  ++ V++ G  +Q ER+ +L + 
Sbjct: 353 RLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLF 412

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++G   + +ATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++      
Sbjct: 413 KEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472

Query: 351 NMQRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
             +  A  L    REA   V  +       +++++++
Sbjct: 473 LNKGLAGELVNVLREAGQVVPADLLKFGTHVKKKESK 509


>gi|333000436|gb|EGK20018.1| ATP-dependent RNA helicase srmB [Shigella flexneri VA-6]
          Length = 444

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 120/399 (30%), Positives = 188/399 (47%), Gaps = 10/399 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + EAL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDKSLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ L+FSAT           +  +         S   +     +      L  +   +V
Sbjct: 181 RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V      L E       L GE+ Q +R+ A++ + +GR  
Sbjct: 241 HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARGID+PD+  V + ++  + +  LHR GRT RAGRKG ++ ++  +     
Sbjct: 301 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL 360

Query: 357 ----ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
                 +       V+ E  P   A  E+   +  +  L
Sbjct: 361 GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVL 399


>gi|308276378|gb|ADO26277.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 450

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 124/395 (31%), Positives = 188/395 (47%), Gaps = 7/395 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I   L+ +G      +QEA +   L+ +DVL    TGSGKT  FGL +
Sbjct: 1   MTSFSDLGLPVSIVHVLNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L + PTRELA QV   L+   A  G+ +   +GGVS++R  
Sbjct: 61  IAAL--AKTGASLPGHPRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   I+V TPGR  D +  K L +  +    LDEAD+M D+GF   +  +L+ +P+
Sbjct: 119 TAFAAPVDILVATPGRAQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPR 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + +  D V  + A        + +   L          V +
Sbjct: 179 DAQRLLFSATLDGDVNKLVERFMHDPVTHSTAEVAAAVDTMTH-YRLHVGDRDSRNDVVL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V R  K L       V + G+  Q  R+NA+    DG   V 
Sbjct: 238 RIAGRIGKTIMFMRTKHGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D++LV+H +  +  +  LHR+GRT RAG  G  V ++ +   +  + 
Sbjct: 298 VATDIAARGIDIGDVDLVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDT 357

Query: 359 LFREANV--SVVWEPAPSVEAIRERDAQRILQDPL 391
           L  +A V    +   A S E +    AQ+I  +PL
Sbjct: 358 LLHKAGVNAESLEVSANSPELVHITGAQKITGEPL 392


>gi|242023201|ref|XP_002432024.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212517382|gb|EEB19286.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 610

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 172/374 (45%), Gaps = 14/374 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +   + +  Y   T +Q       L  ++++  A+TGSGKT+ F L    
Sbjct: 202 SFEETGLADDVINIVRKLNYFAPTPIQSQGWPIALSGQNMVGIARTGSGKTLGFVLPAVI 261

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  +      P+AL +APTREL  Q           +G+      GG   + + R 
Sbjct: 262 HIQHQ-PKLERGDGPIALVLAPTRELVQQTQNVAIPFARASGIRSVAVYGGSDKYGQDRH 320

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  I V TPGRL D +     N+     +VLDEAD M D+GF   I  I+D     R
Sbjct: 321 LRNGTEICVATPGRLLDFLNSGTTNLERCTYLVLDEADRMFDMGFEPQIRSIIDQIRPDR 380

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIV 236
           ++LM+SAT    I  LA+ Y KD +++N+ S+    N   + I +         +   ++
Sbjct: 381 QVLMWSATWPKEIKRLAEEYLKDYIQLNVGSQELTANPNINQIVHVCQSERDKKKLQNVL 440

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        ++F +T+         L +  ++  +L G     +       +  GR +
Sbjct: 441 KEIGEQDEIKTLIFTATKQKSDSIAFWLQDLGYRCDSLHGG----KTQKNRDFILRGRIK 496

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+ D+  VI+ +  +N E+ +HR GRTGR    G S   +      +A
Sbjct: 497 ILVATDVAARGLDVSDIRYVINYDYPNNMEDYIHRIGRTGRHNATGTSYTFLTDEDASKA 556

Query: 357 ERL---FREANVSV 367
             L    REAN +V
Sbjct: 557 GDLISVLREANQNV 570


>gi|90020294|ref|YP_526121.1| ATP-dependent RNA helicase DbpA [Saccharophagus degradans 2-40]
 gi|89949894|gb|ABD79909.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
          Length = 464

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 196/368 (53%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L   GY  +T +Q   L   +  KDV+   +TGSGKT AFGL L ++L  + 
Sbjct: 14  LQPGLMQNLESLGYNTMTPIQAQSLPNIIAGKDVIGQGKTGSGKTAAFGLGLLNSLDVKR 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                     +L + PTRELA QV +E+  L      + V    GG+    +   L++GA
Sbjct: 74  ------FYVQSLVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGA 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R   L++S L  +VLDEAD ML++GF+  ++ I+++ PK+R+ L+F
Sbjct: 128 HIVVGTPGRVEEHVRKNNLDLSKLSVLVLDEADRMLEMGFQAALDAIIETMPKQRQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A       V   + S +   +       +     R  A+  +L  H  +
Sbjct: 188 SATFPEEIQAIASRIMTAPVMTQVESTHDTSTIKQRFYKVDNDDQRLLAVRLLLLQHKPE 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+         LA H F  +AL G+L Q++R   L    +G A V +ATDVAA
Sbjct: 248 SAVVFCNTKRETQMVADDLAGHGFTALALHGDLEQRDRDLTLVRFANGSATVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ VI+  ++ + E  +HR GRTGRAG KG++  +  +    +  RL      
Sbjct: 308 RGLDIESLDAVINYHIARDMEVHVHRIGRTGRAGAKGIACSIYSEKEHFKLARLEETMGQ 367

Query: 366 SVVWEPAP 373
            VV +  P
Sbjct: 368 QVVNDKLP 375



 Score = 60.4 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 26/70 (37%)

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
                  +   +  G KQK     ++  L   +GI    IG I V  + ++V V+   + 
Sbjct: 383 PAPKPKMATLQIDGGKKQKVRPGDIVGGLTGENGIAGTEIGKISVFDNSSYVAVALPVMK 442

Query: 520 LLRRTVKLDK 529
                ++  K
Sbjct: 443 TALNKIRDGK 452


>gi|188590818|ref|YP_001795418.1| ATP-dependent RNA helicase dbpa [Cupriavidus taiwanensis LMG 19424]
 gi|170937712|emb|CAP62696.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 469

 Score =  180 bits (455), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 211/405 (52%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L++ GY  +T +Q A L   L  +D++  A+TGSGKT AFGLAL   
Sbjct: 14  FSALPLSPAMLATLAQLGYDEMTPIQAASLPITLAGQDLVAQAKTGSGKTAAFGLALLHR 73

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L              A+ + PTRELA QV +E+  L   +  V V    GG  +  +   
Sbjct: 74  LDPRRFDV------QAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGSPMRPQVDS 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAHIVVGTPGR+ DHI    L+++ +  +VLDEAD MLD+GF DDI ++    P+ R
Sbjct: 128 LIHGAHIVVGTPGRILDHIDRGSLDLAAINTLVLDEADRMLDMGFFDDIAYVASRCPRDR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT  P I  L+ +      +         ++ I  R   V  S+R NA+  +L 
Sbjct: 188 QTLLFSATYPPGIDKLS-HRFLRNPQSLKLEATHDNTTIRQRFYEVEESERLNAVGRLLD 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+T+A      ++L    +Q +AL GEL Q+ER   L    +    V +A
Sbjct: 247 HFRPASTLAFCNTKARCRDLVELLRAQGYQALALHGELEQRERDQVLVQFANRSCSVLVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ E++ +PE  +HR GRTGRA ++G +  ++  +   R   L 
Sbjct: 307 TDVAARGLDIAQLEAVINVEITPDPEVHVHRIGRTGRADQEGWAFSLVSMDEMGRVGNLE 366

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       W P   +  +    ++R+L  P+    + G  K+ + 
Sbjct: 367 QHHGGEFEWHP---LAELTPASSERLLA-PMVTLQMLGGRKEKIR 407



 Score = 50.4 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
                 +  G K+K     ++  L   +G  ++ IG I V    T++ V 
Sbjct: 392 PMVTLQMLGGRKEKIRPGDILGALTGEAGFAKEQIGKINVLEMSTYIAVE 441


>gi|323448800|gb|EGB04694.1| hypothetical protein AURANDRAFT_70381 [Aureococcus anophagefferens]
          Length = 544

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 181/380 (47%), Gaps = 11/380 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  ++P  +   + ++G+   + +Q       L  +D++  ++TGSGKT+AF L  
Sbjct: 148 VSTFEEASMPDYVLTEVMKQGFKEPSPIQAQGWPMALLGRDMIGISRTGSGKTLAFLLPG 207

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+ L +APTRELAVQ+  E +   A + +      GG     + 
Sbjct: 208 MIHINAQ-PYLQPGDGPIVLVLAPTRELAVQIKVECDKFGASSQIKNTCVYGGAPKRTQT 266

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DLQ G  IV+ TPGRL D +     N+  +  +VLDEAD MLD+GF   +  I+     
Sbjct: 267 GDLQRGVEIVIATPGRLIDFLESGVTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRP 326

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  +A ++ KD  +V + S E   + DI      V    +   + +
Sbjct: 327 DRQTLMWSATWPKEVRNMANDFLKDFYQVTVGSLELSANKDITQYVECVDDGAKYRRMTD 386

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ HG    IVF  T+    + ++ LA   F    + G+ +Q ER   L   R G+  +
Sbjct: 387 FLKEHGVDKMIVFVETKRGCDQLSRSLAHEGFPARCIHGDKAQDERDWVLNEFRSGKCPL 446

Query: 298 CI----ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            +    A    AR        +V++ +  SN E+ +HR GR GRAG+KG ++    Q   
Sbjct: 447 LVATDRAPRARARLTARLRRRMVVNFDFPSNLEDYVHRIGRCGRAGQKGTALSFFTQKSS 506

Query: 354 RRAE---RLFREANVSVVWE 370
           + A    ++  +A   +  E
Sbjct: 507 KWASGLCKILGDAGQKIPPE 526


>gi|25028142|ref|NP_738196.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259507199|ref|ZP_05750099.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
 gi|23493426|dbj|BAC18396.1| putative ATP-dependent RNA helicase [Corynebacterium efficiens
           YS-314]
 gi|259165214|gb|EEW49768.1| ATP-dependent RNA helicase [Corynebacterium efficiens YS-314]
          Length = 460

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 183/374 (48%), Gaps = 5/374 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+P  I + L + G  +   +Q A +   L   DVL    TGSGKT  FGL +
Sbjct: 1   MTTFSELNLPDPIVKELRKEGITDAFPIQAAAIPDALAGLDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A     S    P  L + PTRELA QV   LE   A  G+     +GGV+++R  
Sbjct: 61  LARLAASGA--SRPGQPRGLILVPTRELAAQVRERLEGPAAAMGLRTLEVVGGVNINRNI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L +   ++V TPGR  D +  K L+++ ++   LDEAD M D+GF   +  ++D +P 
Sbjct: 119 TALASPVDVLVATPGRAQDLVNQKKLSLAQVEITALDEADHMADMGFLPQVRRLMDLTPA 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K + L+FSAT+   +T L   Y  + V  + A      + + +  +LV   D    +V  
Sbjct: 179 KGQRLLFSATLDGDVTKLVDRYMHNPVTHSTAPVAAAVNTMTHYRLLVGGRDSRALVVER 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L       V + G+  Q  R+NAL    DG   V 
Sbjct: 239 IAAREGK-TIMFMRTKHGVDRQVKKLRRVGINAVGIHGDKGQNTRTNALAGFTDGSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++     +    
Sbjct: 298 VATDIAARGIDVDDISLVVHVDPPAEHKAYLHRAGRTARAGTTGTVVTLVMDEQVKEVRD 357

Query: 359 LFREANVSVVWEPA 372
           LFR+A V       
Sbjct: 358 LFRKAGVEAAEVEV 371


>gi|326491449|dbj|BAJ94202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 674

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 110/349 (31%), Positives = 173/349 (49%), Gaps = 4/349 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+ + T +Q       L  +DV+  A+TGSGKT+ + L     +  +  + S  S 
Sbjct: 27  IQRAGFPSPTPIQAQSWPIALLNQDVVAIAKTGSGKTLGYLLPGFMHI--KRMQNSTRSG 84

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA Q+  E       + +      GG     + RDL+ G  +VV TPGR
Sbjct: 85  PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGVDVVVATPGR 144

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  + +++  +  +VLDEAD MLD+GF   I  I+   P  R+ LM++AT    + 
Sbjct: 145 LNDILEMRKISLKQVSYLVLDEADRMLDMGFEPQIRKIVRDIPSGRQTLMYTATWPKEVR 204

Query: 195 TLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A       V+V I S +    +  I     ++  S++   +  ILR H + + I+   
Sbjct: 205 RIADELLVHPVQVTIGSVDELVANKAITQHVEVITPSEKLRRLEQILRSHDSGSKILIFC 264

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T   +           F   A+ G+ SQ ER   L   R GRA + +ATDVAARG+D+ D
Sbjct: 265 TTKRMCDQLSRTLNRQFGAAAIHGDKSQNEREKVLSQFRSGRAPILVATDVAARGLDIKD 324

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           + +VI+ +  +  E+ +HR GRTGRAG  G++   +     + A  L +
Sbjct: 325 IRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFLCDQDSKYASDLIK 373


>gi|308473123|ref|XP_003098787.1| CRE-VBH-1 protein [Caenorhabditis remanei]
 gi|308268083|gb|EFP12036.1| CRE-VBH-1 protein [Caenorhabditis remanei]
          Length = 686

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 106/387 (27%), Positives = 174/387 (44%), Gaps = 23/387 (5%)

Query: 5   ENIPQV-----IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           EN  +      + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L + 
Sbjct: 169 ENFSEAGFGPAVMENVTHSGYTKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPII 228

Query: 60  STLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
             ++A         A         P AL ++PTRELA+Q+ +E      KT +  A+  G
Sbjct: 229 QHIMAGGPEMIKTPAFTNGRRTYFPSALVLSPTRELAIQIHKEASKFSYKTNLQTAILYG 288

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L++GAHI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I
Sbjct: 289 GRENYRDQVNRLRSGAHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQI 348

Query: 170 EF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                  +   + +   M   +      +       +           +   +       
Sbjct: 349 RKIVGQGMPAKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLW 408

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           +  +  R N +  ++        +VF  T+   +     L     + V++ G+L Q ER 
Sbjct: 409 VNEMEKRQNLMEILMNEDSTNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 468

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L+M R G+  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++
Sbjct: 469 RNLEMFRSGQFPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIA 528

Query: 345 VFVIPQNMQ---RRAERLFREANVSVV 368
                   +   R  + L  EAN  V 
Sbjct: 529 TSFFNDKNRGIGRDLKNLILEANQEVP 555


>gi|206562042|ref|YP_002232805.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia J2315]
 gi|198038082|emb|CAR54030.1| ATP-independent RNA helicase [Burkholderia cenocepacia J2315]
          Length = 465

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 206/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++   +     +L  P+    I G  K  + 
Sbjct: 362 QAQKREVEWHPLAELKPADD----SVLLPPMETLQILGGRKDKIR 402



 Score = 58.1 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G + + IG I V    T+V     V+ D + 
Sbjct: 386 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIERGVARDALR 445

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       K ++++ +  E
Sbjct: 446 KLNAGKIKGKRVKVRLMDEE 465


>gi|229893773|gb|ACQ90244.1| DEAD-box RNA helicase [Glycine max]
          Length = 537

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 119/395 (30%), Positives = 194/395 (49%), Gaps = 13/395 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +  +P+ + E     G+   + +Q       L  +D++  A TGSGKT+AFG+  
Sbjct: 118 VKSFADSGLPENVLECCK--GFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPA 175

Query: 59  ASTLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
              +L +   + S    PL L ++PTRELA Q+   +       GV      GG S   +
Sbjct: 176 VMHVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQ 235

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IV+GTPGR+ D I      +  +  VVLDEAD MLD+GF   +  IL  + 
Sbjct: 236 ISSLKSGIDIVIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTC 295

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-- 235
             R+M+MFSAT    +  LA+ +        +       ++ D   ++  L DR      
Sbjct: 296 SDRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRL 355

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +           +VF   +    R   +L E  ++VV++ G+ +Q +R+ AL + ++
Sbjct: 356 VALLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKN 415

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               + IATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  
Sbjct: 416 ASCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQN 475

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           +  A  L    REA  +V          +++++++
Sbjct: 476 KGLAGELVNVLREAGQTVPDALLKFGTHVKKKESK 510


>gi|152996051|ref|YP_001340886.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836975|gb|ABR70951.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 417

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 190/376 (50%), Gaps = 6/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +A+S+ G+   T +QE  +   L   D+L +A TG+GKT+AF       +L  
Sbjct: 23  DLDFTIEQAISDLGFEAPTEIQEQAIPIALDGSDLLATAPTGTGKTIAFCAPAVQHILDR 82

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +++ +  +AP  L +AP+RELA Q+   +E L   T +   + IGG     +++ L    
Sbjct: 83  DEQST--TAPKVLILAPSRELARQIFNVVEQLTKHTRIQSHLIIGGTPYGMQQQQLSEPC 140

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL +    + L+++ +   V+DEAD MLD+GF   I  I    PK+ + LMF
Sbjct: 141 DILVATPGRLVELDEKQWLDLTDVSYFVIDEADRMLDMGFVSAINCIAKELPKEHQTLMF 200

Query: 186 SATISPAITTLAK----NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           SAT+             N +   +R+  +S             + +   ++  + ++L  
Sbjct: 201 SATLEGEKMGRFASALLNSETQQIRLGESSRTVPSQIRQIAYRVDSEEHKEAVLKHLLTQ 260

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              + A++F S R  V  + + + +       L GE+ Q +RS  ++ M+ GR +V +AT
Sbjct: 261 ERVQQAVLFVSNREHVDIWVQRIRKMGLMCDGLHGEMKQGDRSEHMKQMKRGRLQVLVAT 320

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RGIDLP++  VI+  L    ++ +HR+GR  R G  G  + +I  N     E++ R
Sbjct: 321 DVASRGIDLPEINTVINLRLPRKADSYIHRAGRASREGEPGDCISLIDINDLPMIEKIQR 380

Query: 362 EANVSVVWEPAPSVEA 377
               ++ +     +EA
Sbjct: 381 FMQANIKFGRIEGLEA 396


>gi|15898827|ref|NP_343432.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|229578785|ref|YP_002837183.1| DEAD/DEAH box helicase [Sulfolobus islandicus Y.G.57.14]
 gi|238619197|ref|YP_002914022.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284997087|ref|YP_003418854.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
 gi|13815318|gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus P2]
 gi|228009499|gb|ACP45261.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.G.57.14]
 gi|238380266|gb|ACR41354.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.4]
 gi|284444982|gb|ADB86484.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           L.D.8.5]
          Length = 360

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +   
Sbjct: 17  NMFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                          AL ++PTRELA Q+  E++ L     + V++      +     D 
Sbjct: 77  NST------------ALILSPTRELATQILDEIKKLGKYKQIDVSLI-----IGGMSYDD 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q  + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K  
Sbjct: 120 QRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               +      +T   +  +     V    +  +     +  V    +D+ + ++     
Sbjct: 180 GFFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLL---EE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++           +R+
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRI 354


>gi|253689218|ref|YP_003018408.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755796|gb|ACT13872.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 460

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 138/399 (34%), Positives = 210/399 (52%), Gaps = 12/399 (3%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P      L+E GY ++T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  + 
Sbjct: 12  PAEQLSNLNELGYTDMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD- 70

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAH 126
                    AL + PTRELA QV +EL  L      + +    GG  + ++   L +  H
Sbjct: 71  -----FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ DH+R + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FS
Sbjct: 126 IVVGTPGRIQDHLRKQSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    I  ++   Q+   R  IA + ++ +  + R        R   +++IL +H   +
Sbjct: 186 ATYPEEIEQISARVQRQPQRFEIADDVKESAI-EQRFYETTKEQRLPLLISILGHHQPSS 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VFC+T+         L      V+AL G+L Q++R   L    +   RV +ATDVAAR
Sbjct: 245 CVVFCNTKRDCQSVFDALDMRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +LELV++ EL+ +PE  +HR GRTGRAG +G++V +       RA  +     + 
Sbjct: 305 GLDIKELELVVNFELAFDPEVHVHRIGRTGRAGMQGLAVSLCTPQEMNRANLIEDYLGMR 364

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + W  A S++    R  +  L+  +    I G  K  + 
Sbjct: 365 IKWAAADSLD----RTGEVTLEPEMMTLCIDGGRKAKIR 399



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G            +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 374 DRTGEVTLEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPLHAYVAIR 433

Query: 515 ADGVDLLRRTVKLDK 529
                   + ++  K
Sbjct: 434 KASAKRALQQLQKGK 448


>gi|119890683|ref|XP_001249975.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|297473570|ref|XP_002686695.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos
           taurus]
 gi|296488716|gb|DAA30829.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10-like [Bos taurus]
          Length = 671

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F+++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 178 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 237

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 238 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 295

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +IVV TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 296 AQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 355

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 356 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 415

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 416 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 475

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 476 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 534

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 535 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 592

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 593 SHSLKQI 599


>gi|76675332|ref|XP_597469.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 1 [Bos
           taurus]
 gi|297471793|ref|XP_002685472.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
 gi|296490513|gb|DAA32626.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Bos taurus]
          Length = 671

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F+++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 178 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 237

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 238 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 295

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +IVV TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 296 AQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 355

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 356 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 415

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 416 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 475

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 476 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 534

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 535 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 592

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 593 SHSLKQI 599


>gi|323474157|gb|ADX84763.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           REY15A]
 gi|323476770|gb|ADX82008.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           HVE10/4]
          Length = 360

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +   
Sbjct: 17  NMFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                          AL ++PTRELA Q+  E++ L     + V++      +     D 
Sbjct: 77  NST------------ALILSPTRELATQILDEIKKLGKYKQIDVSLI-----IGGMSYDD 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q  + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K  
Sbjct: 120 QRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               +      +T   +  +     V    +  +     +  V    +D+ + ++     
Sbjct: 180 GFFSATIPDEIMTLAEEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLL---EE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++           +R+
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRI 354


>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 196/425 (46%), Gaps = 19/425 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 176 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFR 235

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++  
Sbjct: 236 PKRV---FATRVLILTPTRELAVQIHSMIQKLAQFTDIKCGLIVGGLSVREQEVVLRSMP 292

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ ++
Sbjct: 293 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 352

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  +  L K      +R++     R+   +    V +  +   N     +++   
Sbjct: 353 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 412

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       IAT
Sbjct: 413 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 472

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +  + +   + + +
Sbjct: 473 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 532

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    +     P    ++            +   I   E +   V+ A+ D   +    +
Sbjct: 533 KVGSKLKSRVIPEQSIVK------------WSHIIDEMEDQYSAVISAERDERALRKAEM 580

Query: 422 RIHRA 426
              +A
Sbjct: 581 EFAKA 585


>gi|86570094|ref|NP_001033411.1| hypothetical protein F53H1.1 [Caenorhabditis elegans]
 gi|14574201|gb|AAK68386.1|AF045641_1 Hypothetical protein F53H1.1 [Caenorhabditis elegans]
          Length = 970

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 196/377 (51%), Gaps = 8/377 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +     
Sbjct: 315 MMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELE 373

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV 
Sbjct: 374 EGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGAEIVVC 433

Query: 131 TPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+        GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSA
Sbjct: 434 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSA 493

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T    +  LA+      V + +  ++   SDI   AV+ A   +   ++ +   Y+   +
Sbjct: 494 TFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGS 553

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +IVF   +         L    +  VA   G + Q +R +++   + G  +V +AT VAA
Sbjct: 554 SIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAA 613

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREAN 364
           RG+D+ +L LV++ +  ++ E+ +HR GRTGRAGRKG +   + P++ ++ A  + R A 
Sbjct: 614 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICR-AF 672

Query: 365 VSVVWEPAPSVEAIRER 381
            +   +P   ++A+ ER
Sbjct: 673 ETAGCKPPADLKAMFER 689


>gi|296102188|ref|YP_003612334.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295056647|gb|ADF61385.1| ATP-dependent RNA helicase DbpA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 457

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    + L+E GY+ +T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------ATLLQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKSTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++   QK+ + + I S +   +         +   +   + 
Sbjct: 175 PEDRQTLLFSATWPDAIAAISGRVQKNPLTIEIDSVDALPAIEQQFFE-TSQQGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G AR
Sbjct: 234 KLLSQHQPASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W   P    +   +A+
Sbjct: 354 NILSEMLQIKLNWVNTPGNVRVVPLEAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQIKLNWVNTPGNVRVVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V +         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGLDGADIGKITVHPAHVYVAIRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|283457687|ref|YP_003362273.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133688|dbj|BAI64453.1| superfamily II DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 574

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 128/367 (34%), Positives = 195/367 (53%), Gaps = 9/367 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +    Q I +AL+  G  +   +QE  L   L  +D++  A+TG+GKT+ FGL   
Sbjct: 14  KSFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTI 73

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D          AP AL + PTRELA+QVG +L          VA   GGV + 
Sbjct: 74  QRVVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIE 133

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGR+ D  +   LN+  +K VVLDEADEMLDLGF+  +E IL  
Sbjct: 134 PQAELLRRGLEVVVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSY 193

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRD 232
            P+ R+ ++FSAT+   +  +A+ Y    +R+   +    ++  + I          D+D
Sbjct: 194 LPEDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKD 253

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  ILR  G    ++F  T+   +R  + L    F    L G+L+Q  R  AL+  R 
Sbjct: 254 EMIGRILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRT 313

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + +ATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V ++  + 
Sbjct: 314 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDD 373

Query: 353 QRRAERL 359
             R + +
Sbjct: 374 LPRWKVI 380


>gi|328767309|gb|EGF77359.1| hypothetical protein BATDEDRAFT_91848 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 630

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 121/393 (30%), Positives = 190/393 (48%), Gaps = 20/393 (5%)

Query: 1   MKIFEN--IPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K F    IP  I   L   +G V  T +Q   L      +D++  A TGSGKT+ F L 
Sbjct: 181 IKTFREMRIPSAIVSYLKNTKGIVKPTPIQVQGLPTAFSGRDMIGIAFTGSGKTLVFILP 240

Query: 58  LASTLLAENDR--FSPASAPLALAIAPTRELAVQVG------RELEWLYAKTGVVVAVCI 109
           L    L    R  +     P+ L + P+RELA Q         E         + V +C+
Sbjct: 241 LVMLALEAETRLPWIQGEGPVGLILCPSRELARQTYDFTKELCEALEQSGYPSIRVLLCM 300

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG+S+  +   L+ GAHIVV TPGRL D +     N+++ K + +DEAD M+D+GF DD+
Sbjct: 301 GGISMAEQGSVLRAGAHIVVATPGRLQDMLEKNKFNLNNCKYLCMDEADRMIDMGFEDDV 360

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             I+     +R+ L+FSAT+   I   AK+     V VN+      + D+      V   
Sbjct: 361 RNIMSFFKSQRQTLLFSATMPKKIQNFAKSALISPVVVNVGRAGAANLDVIQEVEYVKQE 420

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       + F   +  V    + L     + VA+ G   Q+ER  A++ 
Sbjct: 421 AKMVYLLECLQKTPPPVVV-FAENKNDVDDIHEYLLLKGIEAVAIHGSKDQEEREFAIKS 479

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +  +A V +ATDVA++G+D   ++ VI+ ++    E+ +HR GRTGR+G+ G++   I 
Sbjct: 480 FKACKADVLVATDVASKGLDFSMIQHVINYDMPKEIEDYVHRIGRTGRSGKTGVATTFIN 539

Query: 350 QNMQRRA----ERLFREANVSVVWEPAPSVEAI 378
           +N   +     + L REA   V     P +EAI
Sbjct: 540 RNSSEQILLDLKYLLREAKQRVP----PVLEAI 568


>gi|326923057|ref|XP_003207758.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Meleagris
           gallopavo]
          Length = 703

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 219/439 (49%), Gaps = 14/439 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +S+ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF +     +    
Sbjct: 219 VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIY--K 276

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    + ++PTRELA+Q    L+ +         + +GG +   E + L NG +
Sbjct: 277 LKFMPRNGTGVIILSPTRELAMQTYGVLKEVMNHHVHTYGLIMGGSNRSAEAQKLGNGIN 336

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 337 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLF 396

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+   K         +N++ + +D      V+     R   +   L+ +
Sbjct: 397 SATQTRKVEDLARISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKN 456

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TD
Sbjct: 457 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTD 516

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R  
Sbjct: 517 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFL-RYL 574

Query: 361 REANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA- 417
           ++A V +         +  I+ +  +++++   FL     +  K        H  ++I  
Sbjct: 575 KQARVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKAYIRAYDSHSLKQIYN 633

Query: 418 AGFLRIHRAGLCAPEEITP 436
            G L +++  L    ++ P
Sbjct: 634 VGNLDLNKVSLSFGFKVPP 652


>gi|168021219|ref|XP_001763139.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685622|gb|EDQ72016.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 494

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 122/499 (24%), Positives = 232/499 (46%), Gaps = 33/499 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE++P  +    AL + G+ ++T +Q   +   L  +DVL +A+TGSGKT++F +   
Sbjct: 4   TSFESLPVSEPTKNALKDTGFSHMTEIQARSIPQLLTGRDVLGAARTGSGKTLSFVVPAV 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      F P +    + I+PTRELA+Q+      +         + +GG +   E  
Sbjct: 64  ELLFH--AHFMPRNGAGVIIISPTRELAMQIYGVARDILKYHKQTHGIVMGGANRRTEAE 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G + +V TPGRL DH++        +LK +V+DEAD +L++GF ++++ I+   PK
Sbjct: 122 KLAKGVNFLVATPGRLLDHLQNTKGFIFKNLKCLVIDEADRILEIGFEEEMKQIIKLLPK 181

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
           +R+ ++FSAT +  +  LA+   K A       + R  + +   +    +V+ ++R   +
Sbjct: 182 ERQTVLFSATQTTKVEDLARVSFKKAPLYIGVDDGRSKATVEGLEQGYCVVSSAERFLLL 241

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV   +++L       + + G+  QQ+R++      +   
Sbjct: 242 FTFLKKNLKKKIMVFFSSCNSVKFHSELLNYIDIPCLDIHGKQKQQKRTSTYFEFCNAEK 301

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ +I  +   +P   +HR GRT R  G +G ++  +      
Sbjct: 302 GILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGEGSQGRALLFLIPEELG 361

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-- 411
             + L + A V +     PS + A  +   +++++   +L     D  +   +    H  
Sbjct: 362 FLKYL-KGAKVPLNEYEFPSNKIANVQSQLEKLVEKNYYLHQSARDAYRSYLLAYNSHAM 420

Query: 412 ---------DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                    D + +A+ F      G   P +++ ++L S   +FR      +     +  
Sbjct: 421 KDIFNVHRLDLQAVASSF------GFSCPPKVS-LNLDSSAAKFRKKGPKVEGRSSGKHG 473

Query: 463 FKGSSWFSLSVGSKQKAEA 481
           F  S+ +    G K   + 
Sbjct: 474 FNASNPY----GKKAGGDK 488


>gi|158287566|ref|XP_309566.4| AGAP011084-PA [Anopheles gambiae str. PEST]
 gi|157019713|gb|EAA05253.5| AGAP011084-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 116/460 (25%), Positives = 224/460 (48%), Gaps = 14/460 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL +
Sbjct: 180 DLSRPLMKAIGALGYIYPTPIQASTIPIALMGRDICGCAATGTGKTAAYMLPTIERLLYK 239

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     +    L + PTREL  QV +  + L   T V V + IGG+ V  +   L+   
Sbjct: 240 PNVAQAVT--RVLVLVPTRELGAQVYQVAKQLTQFTNVDVGIAIGGLDVKAQEAVLRKNP 297

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S    R+ ++
Sbjct: 298 DVVIATPGRLIDHIKNTPSFSLDSIEILILDEADRMLDEYFAEQMKEIIRSCSATRQTML 357

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA    K  V++ + +      ++    + +       R+  +  ++  
Sbjct: 358 FSATMTEEVKDLAAVSLKKPVKIFVNNNQTVAFNLRQEFIRIREGREADREAILAALVCR 417

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  + IAT
Sbjct: 418 TFHDHCMVFVQTKRTAHRLRILLGLLGVKTGELHGDLTQAQRLESLKEFKDEQVDILIAT 477

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  + +  E+ +HR GRT RAG+ G+SV +  +  ++  + + +
Sbjct: 478 DVAARGLDISTVKTVINFVMPATLEHYIHRVGRTARAGKAGVSVSLAGEQERKIVKEIVK 537

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A  SV     P    I E+   ++      +D +  +E+      L +   +++ +   
Sbjct: 538 NAVSSVKNRIIPL--DIIEKYRNKVAALEPEIDRVLAEERA---EKLLRQTEQQLTSAER 592

Query: 422 RIH-RAGLCAPEEITPVSL--VSGRDRFRDDSRAFKVGGG 458
           ++   AG  A +++ P      +  +R  + +R      G
Sbjct: 593 KLLGNAGKAAKQDVPPPREWFQTQHERREEKNRLAGEEQG 632


>gi|327404500|ref|YP_004345338.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327320008|gb|AEA44500.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 407

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 120/410 (29%), Positives = 208/410 (50%), Gaps = 15/410 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P    I + L   G+   T +Q   ++P L  +DV   AQTG+GKT AF + +   
Sbjct: 3   FSDYPISDEIKKQLEVLGFKRPTDIQFKAISPILNGEDVFGIAQTGTGKTAAFAIPIIHK 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +   + +P  + +APTRELA Q+    E +   + + +   +GG+   ++ ++L
Sbjct: 63  LSTSRPK---SKSPRCIVLAPTRELAEQIKDAFESIGVGSNIRITAILGGLEQDKQIQEL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  ++V TPGR+ D      L++  ++ +VLDEAD MLDLGF  D++ I   SP++ R
Sbjct: 120 KRGTDVIVATPGRVFDLRSQGHLSLDSIQFLVLDEADRMLDLGFAHDMKAIHKLSPQRNR 179

Query: 182 M-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             + FSATI   I  LA +  +DA+R+ I+ ++    ++++ A+ V + D+   + NI++
Sbjct: 180 QTMFFSATIDKKIKALAYDLVRDAIRIQISPDDPVSKNVEHGAITVEMDDKRFFLENIIK 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +     +VF  T+    R    +        AL G + Q++R   L+  + G  ++ I 
Sbjct: 240 EYEEFKYVVFVRTKVRCERVVAAMERVGIHSEALHGGIEQKDRFAVLERFKSGENKILIT 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  ++ VI+ +L   PE  +HR GRTGR   KG ++       ++  E + 
Sbjct: 300 TDVAARGIDIQGVDYVINYDLPDQPEQYVHRIGRTGRGENKGQALSFCSSEEEKMLEEIE 359

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                 +          I + D   IL+D    + +  + KK++D    +
Sbjct: 360 LYLGYDIEKI------EISKGDYSAILRD---TEDLSYNWKKLLDEANEE 400


>gi|294084931|ref|YP_003551691.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 651

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 122/363 (33%), Positives = 181/363 (49%), Gaps = 1/363 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+  G V  T +Q+  +   L   D++  AQTG+GKT AF L L + L   
Sbjct: 23  DLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQLSY- 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +        P AL +APTRELA Q+   L  L A   +      GG     + R L+ G 
Sbjct: 82  SPSVRSGQPPKALILAPTRELANQISANLSRLSADMNIRHICVFGGARYEGQIRGLKRGV 141

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D +     + S +   +LDEAD MLDLGF   ++ I  S P  R+ ++F
Sbjct: 142 DIVVATPGRLMDLMERGSFDPSGITHWILDEADHMLDLGFYPAMKHISASLPADRQTMLF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L   +  D  RV           I  R  L+A +D+ + + ++L +    
Sbjct: 202 SATMPPEIEKLGNEFLTDPERVKAPQSGITADKITQRVTLMAEADKRDRLCDVLNHEDTG 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+      +K + +  F V  L G++ Q  R   L+  RDGR +  IATDVAA
Sbjct: 262 QCLIFVRTKRRADALSKFMEDRGFAVDTLHGDMRQGLRQKVLRNFRDGRLQGLIATDVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  V++ +L+  PE  +HR GRTGRAG  G+++     + + R   +      
Sbjct: 322 RGIDIAGLSHVVNFDLTDTPEAYVHRIGRTGRAGLGGLALSFCSPSEEPRLAAIIAAVGP 381

Query: 366 SVV 368
            V 
Sbjct: 382 RVE 384


>gi|194863559|ref|XP_001970500.1| GG23340 [Drosophila erecta]
 gi|190662367|gb|EDV59559.1| GG23340 [Drosophila erecta]
          Length = 782

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSVEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|50419477|ref|XP_458265.1| DEHA2C13486p [Debaryomyces hansenii CBS767]
 gi|74659403|sp|Q6BU54|DED1_DEBHA RecName: Full=ATP-dependent RNA helicase DED1
 gi|49653931|emb|CAG86342.1| DEHA2C13486p [Debaryomyces hansenii]
          Length = 630

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 190/378 (50%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 163 LDPLLVENVKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNG 222

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P +A         P AL +APTREL  Q+  E +    ++ V  +V  GG  +  +
Sbjct: 223 PAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQ 282

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R+L+ G  ++V TPGRL D +    ++++ +K +VLDEAD MLD+GF   I  I+    
Sbjct: 283 IRNLERGCDLLVATPGRLKDLLERGRVSLASIKYLVLDEADRMLDMGFEPQIRHIVQECD 342

Query: 178 KK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LA+++ K+ + +++        +I  + + V   ++ +
Sbjct: 343 MPGVEDRQTLMFSATFPKEIQFLARDFLKEYIFLSVGRVGSTSENITQKILYVEDEEKKS 402

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            ++++L  +     I+F  T+         L +  F   A+ G+ SQ ER  AL   + G
Sbjct: 403 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKTG 462

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +AT VAARG+D+P++  +++ +L S+ ++ +HR GRTGRAG  G++     +N +
Sbjct: 463 TAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRAGNIGIATAFFNRNNK 522

Query: 354 RRAE---RLFREANVSVV 368
              +    L  EAN  + 
Sbjct: 523 NIVKGLVDLLTEANQEIP 540


>gi|116618678|ref|YP_819049.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097525|gb|ABJ62676.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 454

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 98/396 (24%), Positives = 191/396 (48%), Gaps = 10/396 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +ALS  G+   T+VQ  ++   L+ +DV+  +QTGSGKT  F + + + L  +
Sbjct: 12  NLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILNQLEQD 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVHRERRDLQ 122
           N+         A+   P+RELA Q+ + ++    +    +++     G     + ++   
Sbjct: 72  NEYV------QAVITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQLEN 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   IV+GTPGR+ D +    L +  +  +V+DEAD  LD+GF +++++I  + P+  + 
Sbjct: 126 HQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     D+++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTIDNWLLATKSKDKNDIIYQVLTIG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      +  L  H  +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKERAKEISSFLRGHGLKVAEIHGDIEPRERRRVMKAIQNLEYQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++ +  E  +HR GRTGR G  G+++ +   + +     L   
Sbjct: 306 LAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVAELE-A 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
             ++   +     E I  +D +  +Q       +  
Sbjct: 365 LGITFKAKQIKGNEIIDVKDRRARVQRVATTKKLDS 400


>gi|306829191|ref|ZP_07462381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
 gi|304428277|gb|EFM31367.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           mitis ATCC 6249]
          Length = 454

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 202/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 15  FKN---YIAEALEELKFETPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 71

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 72  ETSD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIDKL 125

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 126 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 185

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 186 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYELTQ 245

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 246 AMQPYLAMIFVNTKTRADELHTYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 305

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L 
Sbjct: 306 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGIAITLYQPSDDSDIRELE 365

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 366 K---LGIKFTP-------------KMIKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 409

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 410 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 451


>gi|68071941|ref|XP_677884.1| eukaryotic initiation factor [Plasmodium berghei strain ANKA]
 gi|56498165|emb|CAH98223.1| eukaryotic initiation factor, putative [Plasmodium berghei]
          Length = 390

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 185/374 (49%), Gaps = 9/374 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+I   + +   +   G+   +++Q+  + P L  +DV++ +Q+G+GKT  F +   
Sbjct: 17  TSFESIGIDEGLLRGIYAYGFDRPSAIQQRGIKPILNGRDVILQSQSGTGKTCVFAVGAL 76

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +          +    + ++PTRELA Q  +    L     V V  CIGG  +  + +
Sbjct: 77  NCVNRN------LNETQIIILSPTRELAEQTQKVCLALADYIHVTVYCCIGGKKLSDDIK 130

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L NG HI+ GTPGR+   +  + L   ++K +V+DEADEML+ GF++ +  I       
Sbjct: 131 ALNNGVHIISGTPGRIYHMLNLRHLKCKYIKQLVIDEADEMLNKGFKEQVYDIYRFLSPN 190

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++++ SAT+   +  +   +  + V++ +  +      I    + +     +   + ++
Sbjct: 191 TQIVLSSATLPHEVLEITNKFMHNPVKILVKRDELTLEGIKQFFISIEKEQWKYETLADL 250

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VFC+T+  V    K + E  F V  +   +SQ ER + +   R  + RV 
Sbjct: 251 YESLTITQAVVFCNTKLKVDWLAKKMQESNFTVCKMHAGMSQSERDDIMLKFRQCKYRVL 310

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+  RG+D+ ++ LV++ +L ++ E  +HR GR+GR GRKG+++  +  +  +    
Sbjct: 311 ISTDIWGRGLDVHEVSLVVNYDLPNSRECYIHRIGRSGRFGRKGVAINFVKNDDIKILRD 370

Query: 359 LFREANVSVVWEPA 372
           + +  +  +   P 
Sbjct: 371 IEQFYSTQIDEMPM 384


>gi|300113246|ref|YP_003759821.1| DEAD/DEAH box helicase domain-containing protein [Nitrosococcus
           watsonii C-113]
 gi|299539183|gb|ADJ27500.1| DEAD/DEAH box helicase domain protein [Nitrosococcus watsonii
           C-113]
          Length = 431

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 189/379 (49%), Gaps = 3/379 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+V  T +Q   L   L  +DV   AQTG+GKT AF LA    LL E
Sbjct: 15  NLAEALIQGIQKAGFVICTPIQALALPLLLAGEDVAGQAQTGTGKTAAFLLATMQRLLRE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 +  P  L + PTRELA+QV ++ + L   T +   V  GG +  ++R  L+ G 
Sbjct: 75  -PSVGVSQQPRGLIVVPTRELAIQVSKDAQLLGQHTDLRCVVVYGGTNYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GTPGRL D+ +   +    ++ VVLDEAD M DLGF  DI +IL   P   +   +
Sbjct: 134 DILIGTPGRLIDYYQQGIIGFKKIQTVVLDEADRMFDLGFIRDIRYILRRLPPPDKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  Y  +   + I  +      I  R    A  ++ + ++ +L+   
Sbjct: 194 LFSATLSLRVMELAYEYMNNPRLLRIEPQKVTVDKITERIYFPANEEKISLLLALLKRLA 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+    +    L  + F+   LS ++ Q +R   L   +DG   + +ATDV
Sbjct: 254 PRHAIVFANTKHGAEQVWGYLEGNGFKAALLSSDVPQGKRQRLLTAFQDGIYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +  +  V + +L  +PE+ +HR GRT RAG  G +V    ++       +    
Sbjct: 314 AARGLHVSTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACEDYAFSLPDIEEYI 373

Query: 364 NVSVVWEPAPSVEAIRERD 382
              VV       E +  + 
Sbjct: 374 GHKVVPFSVEEEELLVPKQ 392


>gi|323350323|ref|ZP_08085988.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
 gi|322123508|gb|EFX95179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis VMC66]
          Length = 447

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHR 116
             L  E D         A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEEADTV------QAVITAPSRELAAQIYQAARQLASFSEKEIRVANYIGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|312172469|emb|CBX80726.1| ATP-dependent RNA helicase dbpA [Erwinia amylovora ATCC BAA-2158]
          Length = 459

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 133/409 (32%), Positives = 212/409 (51%), Gaps = 15/409 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P    + L+E GY+ +T VQ   L   L  +DV   A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTQLPASQIDNLNELGYLAMTPVQAESLPAILAGRDVRAQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   + A            AL + PTRELA QV +EL  L   T  +  + + G      
Sbjct: 61  VMHRVDASQ------YVTQALVLCPTRELADQVTKELRRLARFTSNIKILTLCGGQPVGA 114

Query: 118 RRDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD   +  HIVVGTPGR+ DH++ + L +  +  +VLDEAD ML++GFR+DI+ I+  S
Sbjct: 115 QRDSLLHAPHIVVGTPGRILDHLQRETLKLDAINTLVLDEADRMLEMGFREDIDAIISHS 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ L+FSAT   AI  ++++ Q++ + +     +   +  +      A  ++  A++
Sbjct: 175 PQTRQTLLFSATWPQAIAQISQSIQRNPLTIETGDVSDLPAI-EQTFYEAASREKLTALI 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L      + +VFC+T+         L +       L G+L Q+ER   L    +G  R
Sbjct: 234 GLLSERQPSSCVVFCNTKRECDDIAYALDKAQISAQPLHGDLEQRERDQMLIRFANGSCR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L +V++ +LS +PE  +HR GRT RAG++G +V  +  +   RA
Sbjct: 294 VLVATDVAARGLDIKALAMVVNYQLSFDPEVHVHRIGRTARAGQEGCAVSFVAPDEMIRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L       ++W    +++++    A R L   +   S+ G  K  + 
Sbjct: 354 HALEDYLQQKLLWCNLSALKSV----AARPLLAEMVTVSLDGGRKAKIR 398



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDL 520
                SL  G K K     ++  L    G++   +G I + P L +V    E++   +  
Sbjct: 383 EMVTVSLDGGRKAKIRPGDILGALTGDGGLSGDQVGKIDIAPTLAYVAIRRELARKVMQQ 442

Query: 521 LRRTVKLDKGIQLKYL 536
           L++     K  + + L
Sbjct: 443 LQQVKIKGKSCRARLL 458


>gi|215788934|gb|ACJ69403.1| Vasa [Botryllus schlosseri]
          Length = 547

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 177/385 (45%), Gaps = 17/385 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  +P  +G+ + + GY   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 91  ITSFDDAKLPDTVGQNVLKSGYEKPTPVQKYSIPIVNNNRDLMACAQTGSGKTAAFLLPV 150

Query: 59  ASTLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            S +        D FS +  P A+ + PTREL  Q+  E       T +   V  GG SV
Sbjct: 151 LSGMFRNGLKSADSFSESQTPQAIVVGPTRELVNQIYIEARKFARGTMIQPVVVYGGTSV 210

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +  +L  G ++++ TPGRL D I    ++   ++ ++LDEAD MLD+GF  +I  +L 
Sbjct: 211 RSQLANLSRGCNMLIATPGRLLDFIDRGKVSCECVEYIILDEADRMLDMGFEPEIRRLLG 270

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALS 229
           +     +    +   S       +    + +R +             SD+    + +  S
Sbjct: 271 APGMPDKNTRHTLMFSATSPDDIQKLAHEFLRDDFLFLTVGRVGGACSDVTQAMIQIDHS 330

Query: 230 DRDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           ++ +    +           +VF  T+ +      + ++      ++ G+  Q+ER  AL
Sbjct: 331 EKRDKLMELLSDVPTTKARTLVFVDTKRNADFLATLPSQENLPTTSIHGDRQQREREMAL 390

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              ++G   + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G +   
Sbjct: 391 VDFKNGTCPILIATSVAARGLDIPKVEHVINYDLPSEIDEYVHRIGRTGRCGNLGTATSF 450

Query: 348 IPQN----MQRRAERLFREANVSVV 368
              +    + R   ++  +A   V 
Sbjct: 451 YDDSKDGTLARSLVKVLSDAQQEVP 475


>gi|238788233|ref|ZP_04632028.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
 gi|238723820|gb|EEQ15465.1| ATP-dependent RNA helicase srmB [Yersinia frederiksenii ATCC 33641]
          Length = 438

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 204/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +   +        S   +   + +      +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRADNIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      +  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGKIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     VV E  PS +A  E+   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVVDELRPSSKAPSEKTTGKPSKKVLAKRKELKEAGKEKAKVKVRHRDAKNV 425


>gi|240282249|gb|EER45752.1| DEAD/DEAH box RNA helicase [Ajellomyces capsulatus H143]
          Length = 579

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 99/414 (23%), Positives = 180/414 (43%), Gaps = 35/414 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 116 VKNFDDAGLHPVMRENIKLCGYKAPTPIQAYAIPAVLTGNDLIAVAQTGSGKTAAFLIPV 175

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 176 LSKLMGKAKKLAAPRPDLGNGFSESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 235

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADEML
Sbjct: 236 LRPCVVYGGGPTREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKYTIVDEADEML 295

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  ++         +     R M+  +           K    D VR+ I      H
Sbjct: 296 HSDWETELSKLISGGDTNEDADHRYMMFSATFNKGCRELARKFLAADHVRIRIGRAGSAH 355

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++    V      +  A+ ++L        +VF +T+A        L        ++  
Sbjct: 356 LNVSQNIVYAEDHLKKQALYDLLISMPPSRTLVFVNTKAQADLIDDYLYNMGLPSTSIHS 415

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +HR 
Sbjct: 416 DRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSAAHGGIEEYIHRI 475

Query: 333 GRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAIR 379
           GRT R G +G++          ++     ++  E    +        P  + +R
Sbjct: 476 GRTARIGNEGLATSFYNHDRNSDIAADLVKILLECKQPLPDFLESEKPEGDDVR 529


>gi|157145669|ref|YP_001452988.1| ATP-dependent RNA helicase DbpA [Citrobacter koseri ATCC BAA-895]
 gi|157082874|gb|ABV12552.1| hypothetical protein CKO_01417 [Citrobacter koseri ATCC BAA-895]
          Length = 457

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P    E L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLENLNELGYLEMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------ASLFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P +R+ L+FSAT   AI  ++   Q++ + + I S +   S         +   +   + 
Sbjct: 175 PSRRQTLLFSATWPEAIAAISGRVQQNPLTIEIDSVDALPSIEQQFFE-TSSQGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G AR
Sbjct: 234 KLLSQHQPASCVVFCNTKKDCQSVCDALNSVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     + + W   P    +   +A+
Sbjct: 354 NILSEMLQLKLNWLTPPGNVPVAPLEAE 381



 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +              
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQLKLNWLTPPGNVPVAPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKITVHPAHVYVAVRQPVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|301120023|ref|XP_002907739.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262106251|gb|EEY64303.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 639

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 115/377 (30%), Positives = 184/377 (48%), Gaps = 13/377 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E +   +   L    Y   T VQ+  +   L  +D++  AQTGSGKT  F     + +L 
Sbjct: 169 EQLGPEVIRNLELCKYSKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPTLAAMLR 228

Query: 65  ENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                 P           P  L ++PTRELA Q+  E +     TG+   V  GG  V R
Sbjct: 229 VGGTPPPDVGHGRSRKIFPAGLILSPTRELASQIHDEAKKFCYCTGIAPVVIYGGAEVGR 288

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LD 174
           + R+L+ G  ++V TPGRL D +    +++S ++ ++LDEAD MLD+GF   I  I   +
Sbjct: 289 QLRELERGCDLLVATPGRLVDLMERGRISLSCIRFLILDEADRMLDMGFEPQIRRIVEQE 348

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             P++R+  MFSAT    I  LA ++ +D + + +        D+      +   D+++ 
Sbjct: 349 DMPRERQTFMFSATFPCEIQRLASDFLRDYIFLTVGRVGSASKDVKQTVEYIEQYDKEDY 408

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V  L        +VF  T+        +L    F   ++ G+ SQ+ER  AL   + GR
Sbjct: 409 LVRFLNQVQDGLILVFVETKRGADFLEDMLCREGFPATSIHGDRSQREREQALASFKSGR 468

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ---N 351
             V +ATDVAARG+D+  +  VI+ +L +N ++ +HR GRTGR G  G ++ ++ +   N
Sbjct: 469 TPVLVATDVAARGLDIDGVTQVINFDLPNNIDDYVHRIGRTGRVGNVGYALSMMNEKNRN 528

Query: 352 MQRRAERLFREANVSVV 368
           + R    L  E    + 
Sbjct: 529 IAREMYELMAENGQEIP 545


>gi|111024195|ref|YP_707167.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
 gi|110823725|gb|ABG99009.1| ATP-dependent RNA helicase [Rhodococcus jostii RHA1]
          Length = 465

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 191/361 (52%), Gaps = 5/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+  AL   G      +Q A +   L  +DVL  A TGSGKT+AFGL +   L    
Sbjct: 21  LPAVMTHALDRSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLAFGLPMLVRL---K 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P  + + PTRELA+Q+ R L+      G+ VA  +GG+ + R+   L  G  
Sbjct: 78  GAASRRGFPRGIVLVPTRELALQIERALDEPALSVGLRVANVVGGIPIKRQVEILSRGVD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL DH+    +++  +  + LDEAD M DLGF   +  ILD +P   + L+FS
Sbjct: 138 LLIATPGRLADHVAQGSVSLDDVTVLALDEADHMADLGFMPQVTTILDKTPADGQRLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL + Y +D V  + A      S + +  + V   D+ + + +I        
Sbjct: 198 ATLDGEVDTLVRRYLRDPVTHSTAPVTASVSTMRHHLLFVDRVDKKSVVAHIGSRV--GR 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V R  + L E      AL G  +Q  R+  L+   +G   V +ATDVAAR
Sbjct: 256 TLMFVRTKYGVDRLAQQLHEAGISAGALHGGKAQNNRTRTLESFAEGTTPVLVATDVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +  ++P++ LHR+GRT RAG  G+ V ++ ++ +   E+L R+A + 
Sbjct: 316 GIHVDDISLVVHVDPPADPKDYLHRAGRTARAGESGVVVTLVTEDERAEVEKLTRKAGIE 375

Query: 367 V 367
           V
Sbjct: 376 V 376


>gi|330794200|ref|XP_003285168.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
 gi|325084889|gb|EGC38307.1| hypothetical protein DICPUDRAFT_76134 [Dictyostelium purpureum]
          Length = 815

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 186/389 (47%), Gaps = 9/389 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF+++P  Q+  + L+E  +  LT +Q A L   L  +D+L +A+TGSGKT+AF + + 
Sbjct: 109 TIFKDLPLSQLTQKGLTESKFYKLTDIQRASLPHTLCGRDILGAARTGSGKTLAFIIPVL 168

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL    +R+S      A+ ++PTRELA+Q+   L+ +         + IGG +V +E+ 
Sbjct: 169 ETLW--RNRWSRNDGIGAIVLSPTRELAIQIFDVLKSVGKHHTFSAGLLIGGRNVTQEKE 226

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L       G + S+LK +VLDEAD +LDLGF   +  IL++ PK+
Sbjct: 227 KVNAMNILIATPGRLLQHMDETYGFDCSNLKMLVLDEADRILDLGFSKSLNSILENLPKQ 286

Query: 180 RRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT + ++  L +    + + + V          ++     ++ L  + N + +
Sbjct: 287 RQTLLFSATQTKSVRDLVRLSLNEPEYISVYEKDIITAPQNLTQTICIIPLEMKLNMLYS 346

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            ++ H     IVF ++   +    +                  ++ +     +     +A
Sbjct: 347 FVKTHLTSKVIVFFASCKQIRFVYETFRLLNPGTSLFQLHGKMKQWTRLEVFEDFCKKKA 406

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  ATD+AARG+D P++E VI  +   + E  +HR GRT R    G ++ ++  + +  
Sbjct: 407 GVLFATDIAARGLDFPEVEWVIQVDCPDDIETYIHRIGRTARNNATGQAITILLPSEKEA 466

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQ 384
              L  +  +       P+ E +   D+Q
Sbjct: 467 MTALLEKQKMK-YEVLEPNPEKLVSIDSQ 494


>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
 gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
          Length = 741

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 224/488 (45%), Gaps = 21/488 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 121 NVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLLFR 180

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L I PTRELAVQ+   +E L   T +   + +GG+S   +   L+   
Sbjct: 181 PRRI---PAIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEVALRTHP 237

Query: 126 HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH+R         L  +VLDEAD +L+LGFR++I  ++   P +R+ ++
Sbjct: 238 DIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTML 297

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRY 241
           FSAT++  ++ L K   K  VR++      + S +    + +      D++  ++++   
Sbjct: 298 FSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIVLSLCSR 357

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+    R   +      +   L G L+Q +R  AL+  R       IAT
Sbjct: 358 SLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIAT 417

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +E VI+ E     +  +HR GRT RAGR G SV ++ +  +   + + +
Sbjct: 418 DVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAK 477

Query: 362 EANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDE----KKMVDVLLAKHDPEK 415
            A   +        S+ + RER  +++ +D + +   + +E    K  ++   A++  + 
Sbjct: 478 RAGSKLQKRVVAATSIASWRER-IEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDY 536

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGR-------DRFRDDSRAFKVGGGSRDNFKGSSW 468
            A  F R  +    + ++ T ++ VS         D   +  +  K    +         
Sbjct: 537 EAEIFARPKKTWFQSQQDKTRIAKVSPASYKAISVDEGEELQKKEKRKAETEKALPRKKR 596

Query: 469 FSLSVGSK 476
             L    +
Sbjct: 597 RRLEAARE 604


>gi|289428099|ref|ZP_06429802.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|289158699|gb|EFD06900.1| putative ATP-dependent RNA helicase DeaD [Propionibacterium acnes
           J165]
 gi|313822547|gb|EFS60261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|314960461|gb|EFT04563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314989611|gb|EFT33702.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315085333|gb|EFT57309.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|327327119|gb|EGE68898.1| ATP-dependent RNA helicase DeaD [Propionibacterium acnes HL096PA3]
 gi|327443743|gb|EGE90397.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|328754844|gb|EGF68460.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
          Length = 560

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 409 TRWKLINKALNLELSE 424


>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
 gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
           40B]
          Length = 447

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 173/366 (47%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+    
Sbjct: 70  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I        ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      A+            S            +   L  ++  +  +L    
Sbjct: 190 SATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T+ L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 369

Query: 364 NVSVVW 369
              + +
Sbjct: 370 QQDLEF 375


>gi|332162701|ref|YP_004299278.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606806|emb|CBY28304.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666931|gb|ADZ43575.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860494|emb|CBX70798.1| ATP-dependent RNA helicase srmB [Yersinia enterocolitica W22703]
          Length = 441

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 204/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+                    A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +A  E+   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKAPSEKSTGKPSKKVLAKRKELKEAGKEKTKVKVRHRDAKNV 425


>gi|8489871|gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 187/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +  +   I + ++   Y   +S+Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 117 IESFNDMCLHPSIMKDIAYHEYTRPSSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPM 176

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               L +         PLAL +APTRELA Q+ +E++        +   + +GG ++ ++
Sbjct: 177 LQHCLVQPP-IRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESLKNCIVVGGTNIEKQ 235

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  I V TPGR  DH++    ++S +  VVLDEAD MLD+GF   I  I+ S P
Sbjct: 236 RSELRAGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLP 295

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K + L+FSAT+   I  LAK Y  + V+V +   +   +++    V V+ S++ + +++
Sbjct: 296 EKHQTLLFSATMPVEIEALAKEYLANPVQVKVGKVSSPTTNVSQTLVKVSGSEKIDRLLD 355

Query: 238 ---------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                        H     IVF   +       + L       V+L G  SQ ER  ALQ
Sbjct: 356 LLVEEASQAEKCGHRFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGHSQNEREAALQ 415

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R     + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G++    
Sbjct: 416 NFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFY 475

Query: 349 PQNMQRRAERLFR 361
                     + +
Sbjct: 476 TDRDMFLVTNIRK 488


>gi|253988777|ref|YP_003040133.1| ATP-dependent RNA helicase SrmB [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780227|emb|CAQ83388.1| srmB [Photorhabdus asymbiotica]
          Length = 448

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/392 (28%), Positives = 188/392 (47%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL+ +GY   T++Q A +   +  +DVL SA TG+GKT A+ L     LL  
Sbjct: 10  DLDERLLDALNNKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + + L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVANQAKELAAHTNLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+                    A  +R+      +    A + +    +         
Sbjct: 188 SATLEGDAIRDFAERLLKDPIEIDAEPSRRERKKIQQFYYRADNLKHKTALLCHLLKQPD 247

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F   R  V      L +   +   L GE+ Q +R+ A++ + DG   V ++TDV
Sbjct: 248 VTKSIIFVRKRERVHELVDELRQAGIKAWYLEGEMVQAKRTEAVKRLNDGSVNVLVSTDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++  +      ++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHDHLLLGKISRYI 367

Query: 364 NVSV----VWEPAPSVEAIRERDAQRILQDPL 391
           N  +    V E  P+  A  E+ + +  +  L
Sbjct: 368 NEPLKPRTVNELRPTTRAPSEKTSNKPSKKVL 399


>gi|165934071|gb|ABY74563.1| DEAD box polypeptide 18 (predicted) [Callithrix jacchus]
          Length = 623

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 130 TSFASLSNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 189

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 190 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 247

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 248 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 307

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 308 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 367

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 368 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 427

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 428 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 486

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 487 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 544

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 545 SHSLKQI 551


>gi|320166884|gb|EFW43783.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 876

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 6/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               +  A+S+ GY   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 297 FDSPLMAAISKHGYTQPTPIQAQAVPVGLSGRDIIGIAKTGSGKTAAFLWPMLVHIM-DQ 355

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D       P+ + +APTREL  Q+  E        G+ VA   GG S + + + LQ G  
Sbjct: 356 DELDVGEGPIGVIVAPTRELCQQIYNEATKFGRVYGLRVAAIYGGESKYEQSKVLQQGVE 415

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL + ++ K  N+     +VLDEAD+M ++GF   +  I++     R+ L+FS
Sbjct: 416 ILVATPGRLIEMLKDKLTNMLRATFLVLDEADKMFNMGFEPQVRSIINRIRPDRQTLLFS 475

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA 244
           AT    I  LA++   D VR+ +      + D+   AV++   D   + +      +   
Sbjct: 476 ATFKKRIERLARDVLTDPVRIVVGDVGEANQDVAQTAVILHSDDEKFSWLTSHIVEFMST 535

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF + +A     T  L +  F+  AL G++ Q  R+  +   +     + +ATDVA
Sbjct: 536 GSVLVFVTKKAGCQLVTDKLNKAHFEASALHGDVDQNSRNTIIAKFKRKAFPILVATDVA 595

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  +  V++ +++ + +   HR GRTGRAG KG +  ++       A  L R  N
Sbjct: 596 ARGLDISHIRTVVNFDVARDIDTHTHRIGRTGRAGEKGSAYTLLSSKDASFAGDLVR--N 653

Query: 365 VSVVWEPA-PSVEAIRERDA 383
                +P  P + A+  ++A
Sbjct: 654 FESANQPVSPQLLALASQNA 673


>gi|270610556|gb|ACZ92304.1| vasa-like protein [Scylla paramamosain]
          Length = 632

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 187/384 (48%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  N+  V+ E +S+  +   T +Q+  +   + ++D++  AQTGSGKT AF L +
Sbjct: 193 VTTFQEMNLRNVLLENVSKAEFPRPTPIQKYSIPILMNQRDLMACAQTGSGKTAAFLLPM 252

Query: 59  ASTLL---AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +L    E+  F   + P+ L +APTRELA+Q+ +E      +T +  +   GGV+ +
Sbjct: 253 LHYILENDIESHSFEDVAQPVGLVLAPTRELAIQIFQEARKFSLQTVIKNSCIYGGVATN 312

Query: 116 RERRDLQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            + R ++    HI++ TPG+L   +    +++  LK +V DEAD MLDLGF DD+E ++ 
Sbjct: 313 FQLRRMKEQGCHIIIATPGKLLFFLGMGKISLKSLKFLVFDEADRMLDLGFIDDMEKLVA 372

Query: 175 SSPKKRR----MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                 +     +MFSAT    +   A  +  + + +        + D+    V VA  +
Sbjct: 373 HPDMPPKGERLTMMFSATFPEEVQRCALRFLDNYLFLVAGQVGAANKDVCQTIVQVAKFE 432

Query: 231 RDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +             +  +VF   +         L+ +  + V L G   Q++R  AL 
Sbjct: 433 KRDKLAEYLRSFEDSQEKVLVFVEMKRQADFVGTYLSTNGSRSVTLHGGRYQEQREEALS 492

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  + RV +AT VAARG+D+  +  VI+ +L  + +  +HR GRTGR G +G +V   
Sbjct: 493 AFRSNQYRVLVATSVAARGLDIRGVGYVINYDLPKSADEYVHRIGRTGRVGNRGQAVSFY 552

Query: 349 PQ----NMQRRAERLFREANVSVV 368
                 N+ +   R+  +A   V 
Sbjct: 553 DPEQDLNLAKDLVRILTDAEQEVP 576


>gi|303278630|ref|XP_003058608.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459768|gb|EEH57063.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 471

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 182/373 (48%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +   I   +    Y   T +Q   +   L  +DVL  A+TGSGKT AF + +
Sbjct: 45  VESFEDMMLNAKILLDIRFHEYDKPTPIQAQAIPIILSGRDVLGCAETGSGKTAAFSIPM 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               L E D       P A+ +APTRELA Q+ +E +     + G    + +GG ++  +
Sbjct: 105 IQHCL-EQDPIKRGDGPFAIVMAPTRELAQQIEKEAKVFSRSSKGFKTTIVVGGTNMSDQ 163

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R DL+ G  + V TPGRL DH+     N+  +  V+LDEAD MLD+GF   I  ++ + P
Sbjct: 164 RSDLRQGVEVCVATPGRLIDHLHQGNTNLGRVSLVILDEADRMLDMGFEPQIREVMQNLP 223

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              + L+FSAT+   + +LA +Y    V+V + + +   +++      +  + + + +  
Sbjct: 224 TPHQTLLFSATMPAEVESLAADYLNKPVKVKVGAVSVPTANVAQHLEKLVDAQKVDRLCE 283

Query: 238 ILRYHGAK---------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L    A+           +VF   +A      ++L        A  G  SQQER  AL 
Sbjct: 284 LLLEEKAEAEKFGGSLPMTVVFVERKARADEVMELLNAEGVSAAAFHGGRSQQEREAALS 343

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             ++G+  V  ATDVAARG+D+  +  V++ ++    E+ +HR GRTGRAG  G +    
Sbjct: 344 DYKNGKCSVLCATDVAARGLDVKGIAHVVNLDMPRMFEDYVHRVGRTGRAGMTGRATSFY 403

Query: 349 PQNMQRRAERLFR 361
                    ++ R
Sbjct: 404 TDRDSYIVAQVKR 416


>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74685735|sp|Q5KIK3|DRS1_CRYNE RecName: Full=ATP-dependent RNA helicase DRS1
 gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 808

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 227/487 (46%), Gaps = 19/487 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL+   +   T +Q   +   L  +D+L SA TGSGKT AF + +   L   
Sbjct: 228 NLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY- 286

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
            DR    +A   L + PTRELAVQ     + L  K    V  A+ +GG+S++ +   L+ 
Sbjct: 287 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 346

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+          L  +V+DEAD ML+ GF D++E I+ + P+ R+ 
Sbjct: 347 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 406

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRY 241
           ++FSAT++ ++  L K      +RV +  +      +      + +   R  +++ + + 
Sbjct: 407 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKR 466

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  ++A   +   V      +   L G L+Q++R  AL   + G     +AT
Sbjct: 467 TIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLAT 526

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ ++        HR GRT RAGRKG SV ++ +  ++  +   +
Sbjct: 527 DLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIK 586

Query: 362 EANVSVVWE---PAPSVEAIRERDAQ---RILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +A    V     P+ +V A++E+  +    I +        +   +  +++   ++  E 
Sbjct: 587 QAEADQVRHRIIPSEAVTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQNMVEH 646

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
            A  F R  R    + +E    S  +G+D +     +F   G S +  K      L  G 
Sbjct: 647 EAEIFSRPARTWFQSGKE-KQASKSAGKDAYVG---SFPSTGKSAEKEKE----KLKRGK 698

Query: 476 KQKAEAR 482
                 R
Sbjct: 699 YDGLSRR 705


>gi|297192239|ref|ZP_06909637.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151271|gb|EFH31061.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 539

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 194/375 (51%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G ++   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 31  LPET-AEALEAVGILSPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVTVPA 89

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 90  DVEAGRAKPEQLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVE 149

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++VGTPGRL D    + L++SH++A+VLDEADEMLDLGF  D+E I+   P K
Sbjct: 150 ALKKGVDVIVGTPGRLLDLAGQRKLDLSHVRALVLDEADEMLDLGFLPDVEKIIQQLPAK 209

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+  A+  LA+ Y      ++  S +       +   R       D+   + 
Sbjct: 210 RQTMLFSATMPGAVIGLARRYMSQPTHISATSPDDEGATVRNTTQRVYRAHSMDKPEMVS 269

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A++FC T+ + +     LA+  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 270 RILQAEGRGLAMIFCRTKRTAADIADQLAQRGFASGAVHGDLGQGAREQALRAFRNGKVD 329

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG  G +V ++  +   R 
Sbjct: 330 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGTAVTLVDWDDIPRW 389

Query: 357 ERLFREANVSVVWEP 371
           + + +  ++     P
Sbjct: 390 QLINKALDLGFPDPP 404


>gi|117164725|emb|CAJ88273.1| putative DEAD/DEAH box helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 472

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 197/371 (53%), Gaps = 5/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +A++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL +      
Sbjct: 47  LPPALLKAMTGLGVTRPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLALLAR---TA 103

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  PLAL +  TRELA QV   L        + +A  +GG+S++R+   L+NGA 
Sbjct: 104 GRRADAKRPLALVLVSTRELAQQVSEALAPYARTMDLRLATVVGGLSINRQAEQLRNGAE 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +  ILD  P   + L+FS
Sbjct: 164 VVVATPGRLADLVSRRDCHLDRVRITVLDEADQMCDMGFLPQVTGILDQVPGDGQRLLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +++  D V  ++   +   + +++  + V  +D+    V          
Sbjct: 224 ATLDGDVDQLVRSHLHDPVLASVDPVSGSVATMEHHVLTVHPADKHA--VATEIAARDGR 281

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+A V RF + L     +  AL    SQ +R++ L    DG   V +AT+VAAR
Sbjct: 282 VLMFLDTKAGVDRFLRHLRAGGVRAAALHSGKSQPQRTHTLAQFVDGGVTVLVATNVAAR 341

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++ +  ++ ++ LHR GRT RAG+ G  V ++  + +R   R+  EA + 
Sbjct: 342 GIHVDALDLVVNVDPPADAKDYLHRGGRTARAGQSGRVVTLVTPDQRRDVNRMMSEAGIR 401

Query: 367 VVWEPAPSVEA 377
               P  S E 
Sbjct: 402 PTITPVRSGEQ 412


>gi|94499046|ref|ZP_01305584.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
 gi|94428678|gb|EAT13650.1| ATP-dependent RNA helicase [Oceanobacter sp. RED65]
          Length = 475

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 106/365 (29%), Positives = 183/365 (50%), Gaps = 3/365 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  ++ + G+   + +Q   L   L  +D++  AQTG+GKT AF + +   LL  
Sbjct: 104 NLDARIMRSIQDLGFSYASPIQAEALPYTLAGRDIIGKAQTGTGKTAAFLITVLQKLLTV 163

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                 AS P AL +APTRELA+Q+ ++ + L       +V V  G     ++ +     
Sbjct: 164 KPEERFASEPRALILAPTRELAMQIAKDADGLSKYADLNIVTVLGGVDYDKQKEQLENEV 223

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             +VV TPGRL D+++   + +  ++ +V+DEAD MLD+GF  D++ I+  +P+   R+ 
Sbjct: 224 VDVVVATPGRLLDYLQQGIVYLDQVEMLVIDEADRMLDMGFIPDLKRIIRGTPEKSIRQT 283

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT    +  L++++     +V I  E+     +  + + +  + +DNA++  L   
Sbjct: 284 QLFSATYPYDVVALSESWTYKPEQVEIEPESVATETVKQQFISLQETQKDNALIEYLEKE 343

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +I+F + R +       L +   + + LSGE++Q +R   L   +     V +ATD
Sbjct: 344 NTGKSIIFANRRDTCRDLADRLNKRGVKALLLSGEVAQAKRMKTLDRFKSEDGAVLVATD 403

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  V +  L  +PE+ +HR GRTGRAG  G ++  I +        L   
Sbjct: 404 VAGRGIHVDGITHVFNYNLPDDPEDYVHRIGRTGRAGESGTAITFIDEYEAYGLMDLESY 463

Query: 363 ANVSV 367
               V
Sbjct: 464 LGKKV 468


>gi|107027331|ref|YP_624842.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
 gi|105896705|gb|ABF79869.1| ATP-dependent RNA helicase DbpA [Burkholderia cenocepacia AU 1054]
          Length = 465

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 207/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       + +    A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARSFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++   +     +L  P+    I G  K  + 
Sbjct: 362 QAQKREVEWHPLAELKPADD----SVLLPPMETLQILGGRKDKIR 402



 Score = 58.1 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G + + IG I V    T+V     V+ D + 
Sbjct: 386 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIERGVARDALR 445

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       K ++++ +  E
Sbjct: 446 KLNAGKIKGKRVKVRLMDEE 465


>gi|320106012|ref|YP_004181602.1| DEAD/DEAH box helicase domain-containing protein [Terriglobus
           saanensis SP1PR4]
 gi|319924533|gb|ADV81608.1| DEAD/DEAH box helicase domain protein [Terriglobus saanensis
           SP1PR4]
          Length = 501

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/407 (29%), Positives = 204/407 (50%), Gaps = 30/407 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-- 63
           NI + + + L+   +VN T VQ   + P L  +DVL +A TG+GKT++F + +   +   
Sbjct: 37  NISEKLKQRLAANNFVNPTPVQAKAIPPALEGRDVLATAATGTGKTLSFLIPMIERMDAN 96

Query: 64  ---------------------------AENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
                                             P +   AL + PTRELA+QV      
Sbjct: 97  PLAALVQQVAQEQAPQPPQYGRQRGGRNNPPPRGPRAPIRALILLPTRELAMQVLDAYAK 156

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +         +  GG+S   +   L+ G  +VV TPGRL D+++ + +N+++++ +VLDE
Sbjct: 157 IVPNAKQDSVLVCGGLSEGAQLDALRRGPRLVVATPGRLEDYLKRREINLNNVEMLVLDE 216

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
            D MLD+GF   I  I+ + PK R+ + +SAT+   IT + ++Y  + +R+ I + ++ +
Sbjct: 217 VDRMLDMGFLPAIRRIVGALPKTRQTMCYSATLDANITEIVRDYVSNPIRIQIGTTSKPN 276

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ RA  V    + + +  +L  H     +VF  T+    R  K L +   +   + G
Sbjct: 277 ERVELRAFTVMQDQKLSLLDQLLGEHAGSY-LVFSRTKHGADRIAKKLEKLGHETDVIHG 335

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           + SQ +R+ AL+    GR+RV +ATDVAARGID+  +  V++ +L +  ++ +HR GRTG
Sbjct: 336 DRSQSQRTAALKSFAMGRSRVLVATDVAARGIDIQHIAHVVNYDLPNGSDDFVHRIGRTG 395

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
           RA   G++   +    +  A +L RE  +S  W  A    A  ER+ 
Sbjct: 396 RASASGVATTFVMPQERSDARKLERELKISFKWAEADKGLAKEERNK 442


>gi|290957574|ref|YP_003488756.1| helicase [Streptomyces scabiei 87.22]
 gi|260647100|emb|CBG70199.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 865

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 14/383 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             F ++   P+   EAL   G +    +QE  L   L   D++  A+TG+GKT+ FGL L
Sbjct: 30  TTFRDLGIFPET-AEALEAVGIITPFPIQEMTLPVALTGTDIIGQAKTGTGKTLGFGLPL 88

Query: 59  ASTL----LAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
              +      E  R  P     +P AL + PTREL  QV  +L        V V    GG
Sbjct: 89  LERVVVPADVEAGRAKPEDLVDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGG 148

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
            +   +   L+ G  +V+GTPGRL D    K LN+ ++K +VLDEADEMLDLGF  D+E 
Sbjct: 149 RAYEPQVEALKKGVDVVIGTPGRLLDLAGQKKLNLKNVKCLVLDEADEMLDLGFLPDVEK 208

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVAL 228
           I++  P +R+ ++FSAT+  A+  LA+ Y      +   S +       +          
Sbjct: 209 IINMLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATSPDDEGATVRNTSQHIYRAHN 268

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            D+   +  IL+  G    +VFC T+ + +     L +  F   A+ G+L Q  R  AL+
Sbjct: 269 MDKPELVARILQADGRGLVMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALR 328

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG KG+++ ++
Sbjct: 329 AFRNGKVDVLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGAKGIAITLV 388

Query: 349 PQNMQRRAERLFREANVSVVWEP 371
             +   R + + +  ++     P
Sbjct: 389 DWDDIPRWQLINKALDLGFNDPP 411


>gi|145349996|ref|XP_001419411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579642|gb|ABO97704.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 183/364 (50%), Gaps = 13/364 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  + + I   +  R Y   + +Q   +   L  +DVL  A+TGSGKT AF + +
Sbjct: 31  IESFEDMTLVRDIMADIRYREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPM 90

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               L +         P A+ +APTRELA Q+  E +     + G   A+ +GG ++  +
Sbjct: 91  IQHALNQAP-LRQGDGPYAIVMAPTRELAQQIEAEAKTFTRSSKGFRTAIIVGGTNMSEQ 149

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R  L++G  IVV TPGRL DH++    N+S +  VVLDEAD MLD+GF   I  +L + P
Sbjct: 150 RGALRSGVQIVVATPGRLIDHLQQGNTNLSRVSFVVLDEADRMLDMGFEPQIREVLMNLP 209

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  + L+FSAT+   +  LA +Y    V+V + + +   +++      V  +++ + +V 
Sbjct: 210 KPHQTLLFSATMPSEVEALASDYLHKPVKVKVGTTSAPTANVSQHLEKVVDAEKVDRLVT 269

Query: 238 ILRY---------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +L                 ++F   +       ++L        AL G  SQ ER  AL 
Sbjct: 270 MLIGEQREAMKLGQDMPMTVIFVERKNRADEIAELLNAENVPAAALHGGRSQGEREAALH 329

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + GR  V +ATDVAARG+D+  +  V++ +L  N E+ +HR GRTGRAG  G S    
Sbjct: 330 DYKTGRCSVLVATDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFY 389

Query: 349 PQNM 352
               
Sbjct: 390 TDRD 393


>gi|71281498|ref|YP_266942.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
 gi|71147238|gb|AAZ27711.1| ATP-dependent RNA helicase RhlB [Colwellia psychrerythraea 34H]
          Length = 428

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/361 (31%), Positives = 184/361 (50%), Gaps = 4/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L   G+   TS+Q   L   L+  D+   AQTG GKT+AF  A    LL +
Sbjct: 15  NLAPQVVTGLEAMGFDYCTSIQAKSLPVLLQGTDLAGQAQTGEGKTIAFLAATFHHLLQK 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELA+Q+ R+   +   TG+ + V  GG     +R +L+ G 
Sbjct: 75  EAPTH--NQPRALIMAPTRELAIQIHRDATEMAKSTGLRLGVVYGGEGYESQRLELEAGV 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GT GRL D+++    N+ +++ +VLDEAD M DLGF  DI ++ D  P       +
Sbjct: 133 DILIGTCGRLIDYMKQGIYNLKNIEVIVLDEADRMFDLGFIKDIRYMFDKMPPATERLSM 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA ++  D   V +  E + +S I       +  D+   +  ++    
Sbjct: 193 LFSATLSFRVKELAFDHMNDPTSVEVEPEQKTNSRISEELFYPSNEDKMTLLQTLIEEDW 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+    +    L     +V  L+G++ Q++R   L+   DG   + +ATDV
Sbjct: 253 PEKAIVFANTKHVCEKVFDHLNADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + ++ +HR GRTGRAG  G ++ +  +        +    
Sbjct: 313 AARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISLACEQYVFNLPEIETYI 372

Query: 364 N 364
            
Sbjct: 373 G 373


>gi|67598831|ref|XP_666241.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis
           TU502]
 gi|54657199|gb|EAL36013.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium hominis]
          Length = 519

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/415 (26%), Positives = 189/415 (45%), Gaps = 10/415 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI   + +AL E G   +T +Q   +   L  KDVL +A+TGSGKT+AF +  A+ 
Sbjct: 28  FESSNICDQLKKALKEMGMETMTEIQAKAIPRILSGKDVLGAAKTGSGKTLAFLIPAANL 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N  F P +    + I+PTREL++Q+      L         + +GG +   E   L
Sbjct: 88  LY--NVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVMGGANRRTEAEKL 145

Query: 122 QNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G +I+V TPGRL DH    K     +L  +V+DEAD +L++GF +++  I+   PK+R
Sbjct: 146 SKGVNILVATPGRLLDHLQNTKQFLFKNLLNLVIDEADRILEIGFEEEMNQIIKLLPKER 205

Query: 181 RMLMFSATISPAITTLAK--NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +  +FSAT +  +  L +        V     S     S ++   V+   + R   +   
Sbjct: 206 QTSLFSATQTTKVADLVRLSLKNPVLVESKNTSSIATVSGLEQGYVIAQANQRFLLLYTF 265

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +  K  +VF S+  S     ++         ++ G+  Q  R             + 
Sbjct: 266 LKKNRDKKVMVFFSSCMSTKFHEELFNYVDLTCSSIHGKKKQTSRMQTYYDFCSADKGLL 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAE 357
           + TDVAARG+D+P+++ ++  +   +P   +HR GRT R AG  G ++  +        +
Sbjct: 326 LCTDVAARGLDIPNVDWIVQYDPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFLQ 385

Query: 358 RLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            L R+ N+ +        + A  +   +R+++    L     D  +      A H
Sbjct: 386 YL-RKMNIPLNEYVFGKNKVANVQNQLERLIEKNYHLHCSARDAYRAYLHSYASH 439


>gi|212638706|ref|YP_002315226.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
 gi|212560186|gb|ACJ33241.1| ATP-dependent RNA helicase [Anoxybacillus flavithermus WK1]
          Length = 426

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 188/366 (51%), Gaps = 12/366 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  +    I EA+    +   T +QE ++   LR + V+  +QTG+GKT A+ L +  
Sbjct: 1   MFERFSFHPFIIEAIEHLKFHKPTPIQERVIPAVLRGESVIGQSQTGTGKTHAYLLPIIQ 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE--- 117
            +          +   A+  APTRELA Q+  E+  +         +         +   
Sbjct: 61  RIDP------RVAEVQAVITAPTRELATQIYHEVLKITKFCPNDHRITARCFVGGTDKLR 114

Query: 118 -RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
               L+   H+V+GTPGR+ D +R + L +   + +V+DEAD MLD+GF  D++ +    
Sbjct: 115 SIEKLKTQPHLVIGTPGRIDDLVREQALFVHTARMLVVDEADVMLDMGFIADVDRVAGRM 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +ML+FSATI   +    K Y +    ++IA +      I++  + +   DR   + 
Sbjct: 175 PEDLQMLVFSATIPEKLKPFLKKYMEHPTHIHIAPKQIAAPTIEHILIPLRHRDRLQLLH 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L  +    A+VF +TR +       L +   +V  L G+LS +ER   ++ +RD + +
Sbjct: 235 DVLVSYNPYLALVFVNTRKTADEVANGLIDKGLKVGVLHGDLSPRERKKMMKAIRDLQFQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+ EL S+ +  +HR+GRTGRAG KG++  +   + Q   
Sbjct: 295 YIVATDLAARGIDIEGVSHVINYELPSDLDFYVHRAGRTGRAGYKGVAATIYETSDQYAL 354

Query: 357 ERLFRE 362
            +L ++
Sbjct: 355 VKLEKK 360


>gi|195330913|ref|XP_002032147.1| GM26397 [Drosophila sechellia]
 gi|194121090|gb|EDW43133.1| GM26397 [Drosophila sechellia]
          Length = 680

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 251

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 252 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 311

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 312 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 371

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 372 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 431

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 432 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 491

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 492 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 550

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A V +         +  I +   ++++    FL+    +  K        H  ++I
Sbjct: 551 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQI 606


>gi|315503693|ref|YP_004082580.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410312|gb|ADU08429.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 553

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q   EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A ++ 
Sbjct: 30  QETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEG 89

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL +QV ++L+      GV V    GGV+   +   L+ G  I+
Sbjct: 90  SDGV--PQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEIL 147

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT
Sbjct: 148 VGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSAT 207

Query: 189 ISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I  L++ + +  V ++    +E          A      ++   +  IL+  G   
Sbjct: 208 MPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQAEGRGL 267

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAAR
Sbjct: 268 TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAAR 327

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ +   + +   HR GRTGRAG  G++V  +  +   R   + +   + 
Sbjct: 328 GIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIIDKTLGLD 387

Query: 367 VVWEP 371
           +   P
Sbjct: 388 MPEPP 392


>gi|302870034|ref|YP_003838671.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572893|gb|ADL49095.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 553

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/365 (33%), Positives = 189/365 (51%), Gaps = 4/365 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q   EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A ++ 
Sbjct: 30  QETVEALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGIPLLERVFAPSEG 89

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL +QV ++L+      GV V    GGV+   +   L+ G  I+
Sbjct: 90  SDGV--PQALVVVPTRELGIQVAKDLDAAGRTRGVRVLPIYGGVAYEPQIEALRKGVEIL 147

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT
Sbjct: 148 VGTPGRLLDLQKQKHLRLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEDRQTMLFSAT 207

Query: 189 ISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I  L++ + +  V ++    +E          A      ++   +  IL+  G   
Sbjct: 208 MPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTTQLAYRTHSLNKVEIVARILQAEGRGL 267

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAAR
Sbjct: 268 TMIFTRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAAR 327

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ +   + +   HR GRTGRAG  G++V  +  +   R   + +   + 
Sbjct: 328 GIDVTGVTHVINYDCPEDQDTYTHRIGRTGRAGATGVAVTFVDWDDMPRWRIIDKTLGLD 387

Query: 367 VVWEP 371
           +   P
Sbjct: 388 MPEPP 392


>gi|195021969|ref|XP_001985492.1| GH14471 [Drosophila grimshawi]
 gi|193898974|gb|EDV97840.1| GH14471 [Drosophila grimshawi]
          Length = 603

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 166/454 (36%), Gaps = 17/454 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L   G+   T++Q   L   L  + ++  A TGSGKT+AF   + ++L   
Sbjct: 128 NLLPRLQENLLSYGFAQPTAIQMQALPVLLANRALMACAPTGSGKTLAFLTPIINSL--- 184

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R    +   AL +APTRELA Q+ RE   L   TG+            ++        
Sbjct: 185 --RSHKTTGLRALVLAPTRELAQQIYRECGELTRSTGLRTHFISKVSEARQQHGPECKQK 242

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           + ++ +       +  +   +  LK +     DE   L       F              
Sbjct: 243 YDILISTPNRVRFMLQQQPPLLDLKGIEWFVLDEADRLMEEGQNNFKEQLDDIYAACTHA 302

Query: 186 SATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAIVN 237
              ++    T      K A+R              +   +       + + S +  A+  
Sbjct: 303 QKRVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGKLLAVRE 362

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R       +VF  ++    +  + L      V  +  E +Q +R N ++  R+G   V
Sbjct: 363 MVRNGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERTQHQRDNCVRAFREGHIWV 422

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QR 354
            I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q+     R
Sbjct: 423 LICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTANLR 482

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              ++ R +   V       ++ +R+ +A+   + PL  + I    +  +     +    
Sbjct: 483 SVAQIIRNSGGKVPEYML-QMKKVRKSEAKVRAKKPLEREDISTKIRPEIPKNFVQLQKV 541

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           +     L+          +    +  S     R 
Sbjct: 542 EKTEKVLKQQAKAKKNMNQDNNSAKSSDSVPSRK 575


>gi|91223278|ref|ZP_01258544.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91192091|gb|EAS78354.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 443

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 173/366 (47%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  + A      A+ +GG + + + + L+    
Sbjct: 66  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I        ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      A+            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHADVNEIAAEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILDRVLSEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T+ L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRDDTERLTEKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 365

Query: 364 NVSVVW 369
              + +
Sbjct: 366 QQDLEF 371


>gi|30683736|ref|NP_193396.3| DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]
 gi|75338927|sp|Q9ZRZ8|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
 gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
 gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
          Length = 789

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 196/425 (46%), Gaps = 19/425 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L     LL  
Sbjct: 173 NLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFR 232

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L + PTRELAVQ+   ++ L   T +   + +GG+SV  +   L++  
Sbjct: 233 PKRV---FATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMP 289

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH      +++  L  ++LDEAD +L  GF  +I  ++   PK+R+ ++
Sbjct: 290 DIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTML 349

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---VNILRY 241
           FSAT++  +  L K      +R++     R+   +    V +  +   N     +++   
Sbjct: 350 FSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTR 409

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  R   +      +   L G L+Q +R ++L++ R       IAT
Sbjct: 410 TFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIAT 469

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+       ++ +HR GRT RAGR+G +V  +  + +   + + +
Sbjct: 470 DVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAK 529

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +    +     P    ++            +   I   E +   V+ A+ D   +    +
Sbjct: 530 KVGSKLKSRVIPEQSIVK------------WSQIIDEMEDQYSAVISAERDERALRKAEM 577

Query: 422 RIHRA 426
              +A
Sbjct: 578 EFAKA 582


>gi|127511532|ref|YP_001092729.1| ATP-dependent RNA helicase DbpA [Shewanella loihica PV-4]
 gi|126636827|gb|ABO22470.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 468

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/405 (32%), Positives = 210/405 (51%), Gaps = 13/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    + + L   G+  +T +Q   L   L  +DV+   +TGSGKT AFGL L + 
Sbjct: 13  FDSLPLNPALLDTLKSIGFHQMTPIQAQSLPAILNGQDVIGQGKTGSGKTAAFGLGLLNK 72

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L  +  R         L + PTRELA QV  EL  L      + +    GGV +  +   
Sbjct: 73  LDVKRFRI------QTLVLCPTRELADQVAAELRTLARGIHNIKILTLCGGVPMGPQIGS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L++ ++  +VLDEAD ML++GF+ +++ I+   P++R
Sbjct: 127 LEHGAHIIVGTPGRIIDHLDRGRLDLDNVDTLVLDEADRMLEMGFQRELDAIMQEVPRER 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +  D + V +  ++   S   +       +DR  A+  +L 
Sbjct: 187 QTLLFSATFPEQIQGLSEQFMIDPLMVKVEVQHGGESIEQHFYECGNNNDRMKALQLLLL 246

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  ++A+VFC+T+         L    F VVAL G+L Q++R   L    +  A V +A
Sbjct: 247 KHQPESAVVFCNTKRETKDVAAKLTNAGFSVVALHGDLEQRDRDQMLLKFANKSASVMVA 306

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++V++  ++ + E  +HR GRTGRAG KG +  +       +   L 
Sbjct: 307 TDVAARGLDIDALDMVVNYHMAYDTEVHIHRIGRTGRAGSKGAAHTLFNHEDGYKLSLLA 366

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 +  E  P  EA+ +       Q  +    I G +K+ V 
Sbjct: 367 DALGREIDGEALPG-EALLDT---MPPQPRMVTIQIDGGKKQKVR 407



 Score = 54.2 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
                      +  G KQK     ++  L   +GI    +G I++    ++V V      
Sbjct: 387 MPPQPRMVTIQIDGGKKQKVRPGDILGCLTGDNGIEGSEVGKIKITEFRSYVAVDRK--- 443

Query: 520 LLRRTVKLDKGIQLKYLG 537
           +LR+   L+K ++ K  G
Sbjct: 444 VLRKA--LNKIVKGKLKG 459


>gi|238759674|ref|ZP_04620834.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
 gi|238702102|gb|EEP94659.1| ATP-dependent RNA helicase srmB [Yersinia aldovae ATCC 35236]
          Length = 441

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 122/418 (29%), Positives = 206/418 (49%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +   +        S   +   + +     ++  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILNEPVELEADPSRRERKKILQWYYRADSIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      ++ R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTSDVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGKIGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           N      V+ E  P+ +A  E+   +  +  L     ++   K+ V V +   D + +
Sbjct: 368 NEPLKPRVIDELRPTSKAPSEKATGKPSKKVLAKRKELKEASKEKVKVKVRHRDAKNV 425


>gi|47217820|emb|CAG07234.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 737

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 101/369 (27%), Positives = 176/369 (47%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +   ++ + 
Sbjct: 108 FDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQK 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+A+ + PTREL  Q+  E +       +      GG S+  + + LQ GA 
Sbjct: 168 E-LEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAE 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH++ K  ++  +  +V DEAD M D+GF   +  I       R+ L+FS
Sbjct: 227 IVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    I  LA++   D +RV        + D+     L+       + +      +  +
Sbjct: 287 ATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVELLLSGSDKWSWLTRRLVEFTSS 346

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + ++F + + +       L +  + +  L G++ Q ER+  +   +     + +ATDVA
Sbjct: 347 GSVLIFVTKKTNSEELATNLTQEGYSLGLLHGDMDQSERNKVISDFKKSNMPILVATDVA 406

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE-- 362
           ARG+D+P +  V++ +++ + +   HR GRTGRAG KG++  ++       A  L R   
Sbjct: 407 ARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDSSFAGDLVRNLE 466

Query: 363 -ANVSVVWE 370
            AN +V  E
Sbjct: 467 GANQAVSKE 475


>gi|315047684|ref|XP_003173217.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
 gi|311343603|gb|EFR02806.1| ATP-dependent RNA helicase has1 [Arthroderma gypseum CBS 118893]
          Length = 567

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 121/474 (25%), Positives = 217/474 (45%), Gaps = 16/474 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 94  SLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--R 151

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +   AL I PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 152 SLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLNKGV 211

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++GTPGRL DH+R        +LK +V+DEAD +L++GF D++  I+   PK  R  M
Sbjct: 212 NVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTM 271

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   ++     R   + + L+
Sbjct: 272 LFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLK 331

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I 
Sbjct: 332 KNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLIC 391

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  +  +       L
Sbjct: 392 TDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGFINHL 451

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI-- 416
            REA V VV    P+   I  +   ++++    +L+    +  +      A H    +  
Sbjct: 452 -REARVPVVEFEFPTKHIINIQSQLEKLISQNYYLNQSAKEGYRSYLHAYASHSLRSVFD 510

Query: 417 --AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                 +++ ++          ++L  G    RD     +   GS+        
Sbjct: 511 VNKLDLVKVAKSYGFTTPPRVDIAL--GASMSRDKKVQGRRTYGSQPKGASFKR 562


>gi|195591171|ref|XP_002085316.1| GD12376 [Drosophila simulans]
 gi|194197325|gb|EDX10901.1| GD12376 [Drosophila simulans]
          Length = 592

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 157/405 (38%), Gaps = 18/405 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + + L  R +   T +Q   L   L+ + ++  A TGSGKT+AF   +   L 
Sbjct: 124 FKMLPR-LQQNLLSRNFDRPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIIDGL- 181

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    +   AL +APTRELA Q+ RE   L  +TG+            ++      
Sbjct: 182 ----RVHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECK 237

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +  L  V     DE   L       F            
Sbjct: 238 QRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACS 297

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
             +  ++    T      K A+R              +   +       + +   +  A+
Sbjct: 298 HPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAM 357

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G  
Sbjct: 358 RDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGSI 417

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q     
Sbjct: 418 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSN 477

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            R    + + +  +V       ++ +R+ +A+   + PL  + I 
Sbjct: 478 LRSIALIIKNSGGTVPEYML-QMKKVRKSEAKMRAKKPLDREDIS 521


>gi|225558597|gb|EEH06881.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus G186AR]
          Length = 810

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 185/398 (46%), Gaps = 10/398 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++P  +   + LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  FEAFSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG  +  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK
Sbjct: 166 ERLGKMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   V++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       IVF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 YSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDP 390
              +   +  + +      S +   I+ +      +DP
Sbjct: 406 GMLKRLEQKKIPIEKINVRSKKQQSIKNQLQNMCFKDP 443


>gi|224137340|ref|XP_002322533.1| predicted protein [Populus trichocarpa]
 gi|222867163|gb|EEF04294.1| predicted protein [Populus trichocarpa]
          Length = 443

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 182/391 (46%), Gaps = 4/391 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + EA    G+   T +QE  +   L+ KD++  A TGSGKT AF L   
Sbjct: 10  KTFADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTL 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI--GGVSVHRE 117
             +L ++             ++PTRELA+Q+  + E L +  GV   V +    +     
Sbjct: 70  EAILKDSQERKSVQPFFVCVLSPTRELAIQIAEQFEALGSGIGVRCVVLVGGEDMLQQSI 129

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
               +    IV             KG ++  LK ++LDEAD +L + F   ++ IL + P
Sbjct: 130 VLAKKRPHVIVGTPGRLADHLSNTKGFSLHALKYLILDEADRLLSMDFEKSLDEILKAIP 189

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR  +FSAT++     L +   ++ V++  A +      ++     +  + +D  +V+
Sbjct: 190 RNRRTYLFSATMTNKAGKLQRACLRNPVKIEAAFKYSIVDTLEQGFYFMPAALKDCYLVH 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       ++VF  T         VL +     + ++G++SQ  R  AL   + G   +
Sbjct: 250 VLSSKKGATSMVFTRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALNKFKAGEFNI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TDVA+RG+D+  +++V++  + +N ++  HR GRT RAGR G+++ ++ Q      +
Sbjct: 310 LICTDVASRGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQFDIGPFK 369

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           ++ +            + E      A+R+ +
Sbjct: 370 QIEKHIGDDFKIPKYTANEDEVLLLAERVTE 400


>gi|308177940|ref|YP_003917346.1| ATP-dependent RNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745403|emb|CBT76375.1| putative ATP-dependent RNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 538

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 10/378 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++   + I  +LSE G      +Q   L   L   D++  A+TG+GKT+ FG+   
Sbjct: 26  QSFADLKVREDIVASLSEAGIEYPFPIQALTLPVALGGNDIIGQAKTGTGKTLGFGIPAL 85

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++ E D+         AP AL +APTRELA+QVG +L      + + +    GG    
Sbjct: 86  QRVVREGDKGYEDLEFPGAPQALIVAPTRELAIQVGADLAQASKHSNISITTIYGGRPYE 145

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  ++VGTPGRL D  R + LN+  +K VVLDEADEMLDLGF  D+E IL +
Sbjct: 146 EQINALKAGTDVIVGTPGRLIDLNRQRVLNLKQVKTVVLDEADEMLDLGFLPDVERILAA 205

Query: 176 SPKKRRMLMFSATIS----PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
            P  R+ ++FSAT+                    +     ++    +I          D+
Sbjct: 206 LPPVRQAMLFSATMPGAVITMARRYMTRPTHIRAQDPGDDDSLTKRNIRQLIYRAHNMDK 265

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D  +  +L+  G    I+F  T+ S +R +  L +  F   +L G+L Q  R  AL+  R
Sbjct: 266 DEMVARLLQAEGRGKTIIFTQTKRSAARLSDELIDRGFNAGSLHGDLGQGAREQALKAFR 325

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + +ATDVAARGID+ D+  V++ +   +    LHR GRTGRAG  G +V  +  +
Sbjct: 326 SGKVEILVATDVAARGIDVDDVTHVVNLQCPDDENTYLHRVGRTGRAGNTGTAVTFVDWD 385

Query: 352 MQRRAERLFREANVSVVW 369
              R   + +   ++V  
Sbjct: 386 SVPRWSLINKALGLNVPE 403


>gi|281178534|dbj|BAI54864.1| ATP-dependent RNA helicase [Escherichia coli SE15]
          Length = 457

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+  GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNGLGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKECQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 525

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 200/477 (41%), Gaps = 41/477 (8%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I  AL ++G ++   +Q   L   L  +D++  A+TG+GKT+ F + + 
Sbjct: 26  KTFADFDVEPEIVAALRDQGIIHPFPIQALTLPVALNRQDIIGQAKTGTGKTLGFAIPIL 85

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++   D        +  P AL I PTRELA QV  E+          +    GGV   
Sbjct: 86  HDIIGPGDEGWDEIPDSGFPQALVILPTRELAKQVAAEIRAAATHRVARIIEIYGGVGFD 145

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D +    L +  ++ +V+DEADEMLD+GF  D+E ++  
Sbjct: 146 SQVEALRKGVEVVVGTPGRLIDLMNQGTLKLGRIRTLVMDEADEMLDMGFLPDVEKLISQ 205

Query: 176 SPKKRRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P +R  ++FSAT+   +                 +    ++    +      V   ++ 
Sbjct: 206 IPPRRHTMLFSATMPGPVVALARRYMYQPTHIRATDPTDSSQTVRQVKQVVYRVHSLNKT 265

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  IL+       I+F  T+ +  R +  LAE  F   A+ G+L Q  R  AL+  R 
Sbjct: 266 EVIARILQARNRGLTIIFTRTKRTCQRLSDELAERGFATGAIHGDLGQNARERALRAFRH 325

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ E   + +  +HR GRT RAG KG ++  I    
Sbjct: 326 GKVDVLVATDVAARGIDVDDVTHVINYECPEDDKTYIHRIGRTARAGNKGSAITFIDWED 385

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL-AKH 411
             R                             R++   L LD     E       L +  
Sbjct: 386 LTRW----------------------------RVINRTLDLDFADPQETYHTSPHLYSDL 417

Query: 412 DPEKIAAGFL---RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
           D    A   L   R  RAGL A E          R   R   +    G    +  +G
Sbjct: 418 DIPTDATANLPRFRRVRAGLEAEELEDLGGRDPARPGKRRAGKGSGAGRRKSEKGRG 474


>gi|123441353|ref|YP_001005340.1| ATP-dependent RNA helicase SrmB [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088314|emb|CAL11105.1| ATP-dependent RNA helicase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 441

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 204/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLVDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+                    A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +A  E+   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKAPSEKSTGKPSKKVLAKRKELKEAGKEKTKVKVRHRDAKNV 425


>gi|327306545|ref|XP_003237964.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
 gi|326460962|gb|EGD86415.1| DEAD box ATP-dependent RNA helicase [Trichophyton rubrum CBS
           118892]
          Length = 565

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/418 (27%), Positives = 203/418 (48%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A+S  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 93  SLSEPTVKAISGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--R 150

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +   AL I PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 151 SLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLNKGV 210

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++GTPGRL DH+R        +LK +V+DEAD +L++GF D++  I+   PK+ R  M
Sbjct: 211 NVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKEDRQTM 270

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   ++     R   + + L+
Sbjct: 271 LFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLK 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I 
Sbjct: 331 KNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLIC 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  +  +       L
Sbjct: 391 TDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGFINHL 450

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            REA V VV    P+   I  +   ++++    +L+    +  +      A H    +
Sbjct: 451 -REARVPVVEFEFPTKHIINIQSQLEKLISQNYYLNQSAKEGYRSYLHAYASHSLRSV 507


>gi|50750746|ref|XP_422125.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 18
           [Gallus gallus]
          Length = 662

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 219/439 (49%), Gaps = 14/439 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +S+ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF +     +    
Sbjct: 178 VSENTLKGISDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIY--K 235

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    + ++PTRELA+Q    L+ L         + +GG +   E + L NG +
Sbjct: 236 LKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGIN 295

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 296 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLF 355

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LAK   K         +N++ + +D      V+     R   +   L+ +
Sbjct: 356 SATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKN 415

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TD
Sbjct: 416 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTD 475

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R  
Sbjct: 476 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFL-RYL 533

Query: 361 REANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA- 417
           ++A V +         +  I+ +  +++++   FL     +  K        H  ++I  
Sbjct: 534 KQARVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKAYIRAYDSHSLKQIYN 592

Query: 418 AGFLRIHRAGLCAPEEITP 436
            G L +++  L    ++ P
Sbjct: 593 VGNLDLNKVSLSFGFKVPP 611


>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
 gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 482

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 191/367 (52%), Gaps = 10/367 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 56  KSFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 115

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 116 QALMEKPQ------SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAI 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 170 ALGKKPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPR 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  + +L +    + +RV+I+S   Q         + +    +D  +V 
Sbjct: 230 ERRTYLFSATMSSKVESLQRASLSNPLRVSISSSKYQTVSTLLQSYLFIPHKYKDLYLVY 289

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +  ++AIVF  T     R   +L    F  + L G+LSQ  R  AL   R     +
Sbjct: 290 LLNEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDI 349

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G +  ++ Q       
Sbjct: 350 LVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWL 409

Query: 358 RLFREAN 364
           R+     
Sbjct: 410 RIENALG 416


>gi|50122015|ref|YP_051182.1| ATP-dependent RNA helicase DbpA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612541|emb|CAG75991.1| ATP-independent RNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 460

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +
Sbjct: 11  LPAEQLSNLNELGYTEMTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L      + +    GG  + ++   L +  
Sbjct: 71  ------FTTQALVLCPTRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+R + L +  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+F
Sbjct: 125 HIVVGTPGRIQDHLRKQSLALDSLKVLVLDEADRMLDMGFTDAIDDVISYTPSDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++   Q+   R  IA +  + +  + R        R   ++ IL ++   
Sbjct: 185 SATYPQEIEQISARVQRQPQRFEIADDVEESAI-EQRFYETTKDQRLPLLIAILSHYQPA 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+       + L      V AL G+L Q++R   L    +   RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQSVFEALEMRGISVSALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L LV++ EL+ +PE  +HR GRTGRAG +G++V +       RA  +     +
Sbjct: 304 RGLDIKELALVVNFELAFDPEVHVHRIGRTGRAGTQGLAVSLCTPQEMNRANLIEDYIGM 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            + W    S + I  R     L+  +    I G  K  + 
Sbjct: 364 RIKWT---SADEI-SRSGDVALEPEMMTLCIDGGRKAKIR 399



 Score = 58.8 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 23/75 (30%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G            +  G K K     ++  L    G+    +G I + P   +V + 
Sbjct: 374 SRSGDVALEPEMMTLCIDGGRKAKIRPGDILGALTGDVGLTAAEVGKIDMFPLHAYVAIR 433

Query: 515 ADGVDLLRRTVKLDK 529
            D      + ++  K
Sbjct: 434 KDSAKRALQQLQKGK 448


>gi|311746403|ref|ZP_07720188.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575289|gb|EAZ79621.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 399

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 113/351 (32%), Positives = 191/351 (54%), Gaps = 9/351 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++    V+   LSE+GY N+T++QE  +   L  +D+L  + TGSGKT AF + + 
Sbjct: 55  TSFASLSLDSVMMRNLSEKGYENMTNIQEQSIEALLEGRDLLGISNTGSGKTGAFLIPII 114

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              L    +F+      AL + PTRELA+Q+ +E + L     +  A  IGG +++ + +
Sbjct: 115 EHALKNPGQFT------ALIVTPTRELALQIDQEFKSLSKGMRLHSATFIGGTNINTDMK 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++VGTPGRL D    K L ++ +K +VLDE D MLD+GF +D++ ++    ++
Sbjct: 169 VLSRKLHVIVGTPGRLLDLTNRKLLKLNQVKTLVLDEFDRMLDMGFVNDVKKLVGGMTQR 228

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNI 238
            + ++FSAT+ P    L ++  K+ V V I +    + +I+     +    D+   + ++
Sbjct: 229 EQTMLFSATLEPNQKNLIQSLLKNPVEVKINTGVSTNENIEQGIIRVPEGKDKFGMLADL 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +       IVF  T+    R +K L +   +   + G  SQ  R+  ++  + G  RV 
Sbjct: 289 FQNRAMDKVIVFTETKRLADRLSKKLNQAGVKSGLIHGNKSQNFRNKTIEQFKSGETRVL 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +ATDVAARGID+ D+  VI+ +L    ++ +HR GRTGRAG+ G ++  + 
Sbjct: 349 VATDVAARGIDVADVSHVINYQLPMTMDSYIHRIGRTGRAGKTGHAITFVN 399


>gi|254571715|ref|XP_002492967.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|238032765|emb|CAY70788.1| Nucleolar DEAD-box protein required for ribosome assembly and
           function [Pichia pastoris GS115]
 gi|328353020|emb|CCA39418.1| ATP-dependent RNA helicase DDX27 [Pichia pastoris CBS 7435]
          Length = 761

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/429 (27%), Positives = 216/429 (50%), Gaps = 31/429 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + LS  GY   + +Q A +   L  KD++  AQTGSGKT A+ + +   LL +
Sbjct: 253 SLSRPVLKGLSTLGYTKPSPIQSASIPIGLLGKDIVAGAQTGSGKTAAYMIPIIERLLFK 312

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + S   A   + + PTRELA+QV    + +     G+   + +GG+++ ++ ++L+  
Sbjct: 313 PSKIS---ATRVVVLTPTRELAIQVNDVGKKISQFVNGIEFGLAVGGLNLRKQEQELRKR 369

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     ++  ++ +V+DEAD ML+ GF+++++ IL   P K++ +
Sbjct: 370 PDIVIATPGRFIDHIRNSPSFSVESVEILVIDEADRMLEDGFQEELKEILTLLPGKKQTM 429

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-----NAIVNI 238
           +FSAT++ +I  L +      VR+ I    +  S +    V +  +          I+  
Sbjct: 430 LFSATMNNSIKDLIQLSLHKPVRIMIDPPKQAVSGLVQEFVRLRKNLEMKPALLFDILTK 489

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        +VF + +    +   +L     +V  L G L+Q++R  ++   ++    + 
Sbjct: 490 VNPSQQHRIVVFIARKMDAHKLRIILGLLGLKVSELHGSLTQEQRLKSITDFKNLTVPIL 549

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++    +  LHR GRT RAGR+G S+  + ++ Q RA  
Sbjct: 550 ICTDLASRGLDIPKIEVVINYDMPKTYDIYLHRVGRTARAGREGRSITFVSESNQDRA-- 607

Query: 359 LFREA------------NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           + REA              +V W+    +  + E  A+ I         I  +EK+    
Sbjct: 608 IVREAMKGIATAKNRALGRNVDWDSIEKIHQLIEEKAETI-------GDILSEEKEEKQF 660

Query: 407 LLAKHDPEK 415
           L A+ +  K
Sbjct: 661 LRAEMEVRK 669


>gi|260796379|ref|XP_002593182.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
 gi|229278406|gb|EEN49193.1| hypothetical protein BRAFLDRAFT_209728 [Branchiostoma floridae]
          Length = 614

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 204/402 (50%), Gaps = 22/402 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ ++I   +    Y+  T VQ+  +      +D++  AQTGSGKT AF + + S +   
Sbjct: 144 DLGEIISNNIKLSNYMKPTPVQKYAIPIARANRDLMACAQTGSGKTAAFLIPILSLIYEN 203

Query: 66  NDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             +  P               PLAL +APTRELA Q+  E +    ++ V   V  GG  
Sbjct: 204 GPQGLPQHGRQYGGSGSRKRYPLALVLAPTRELASQIYDESKKFAYRSHVRPCVVYGGAD 263

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + RDL+ G H++VGTPGRL D +    + + ++K ++LDEAD MLD+GF   I  I+
Sbjct: 264 IGGQMRDLERGCHLLVGTPGRLVDMMERGRIGLDYIKYLILDEADRMLDMGFEPQIRRIV 323

Query: 174 DSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           +         RR +MFSAT    I  LA+++  + + + +        +I  + V V   
Sbjct: 324 EQDTMPGTGKRRTMMFSATFPKEIQMLARDFLDNYIFLAVGRVGSTSDNITQKVVWVDEQ 383

Query: 230 DRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
           D+ + ++++L   G ++   + F  T+         L    + V ++ G+ SQ+ER +AL
Sbjct: 384 DKRSFLLDLLNATGKEDSLTLTFVETKKGADSLEAFLYSEGYPVSSIHGDRSQREREDAL 443

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R G   + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G++   
Sbjct: 444 MTFRTGVTPILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRVGNLGLATSF 503

Query: 348 I---PQNMQRRAERLFREANVSV-VWEPAPSVEAIRERDAQR 385
                +N+ R    +  E+   +  W  + + E  R++ + R
Sbjct: 504 FNDKNRNVVRDLVDILIESKQELPPWLESMAYEERRQQSSGR 545


>gi|170589285|ref|XP_001899404.1| KIAA0801 protein [Brugia malayi]
 gi|158593617|gb|EDP32212.1| KIAA0801 protein, putative [Brugia malayi]
          Length = 964

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 187/375 (49%), Gaps = 7/375 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I   L +  Y   T +Q   +   +  +DV+  A+TGSGKT+AF L +   +L +     
Sbjct: 315 ILSTLKKLEYKKPTPIQCQAIPAIISGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELE 373

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ ++PTRELA+Q  +E      +  V VA   GGV +  +  DL+ GA +VV 
Sbjct: 374 EMDGPIAVIMSPTRELAMQTWKEANKFAKQLNVRVACVYGGVGISDQIGDLKRGAEVVVC 433

Query: 131 TPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           T GRL D     +GK  N+  +  +VLDEAD M D+GF   +  I+++    R+ ++FSA
Sbjct: 434 TVGRLTDMLAANKGKVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFSA 493

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAKN 246
           T    +  LA+      + + +  ++    D++   V++    +   ++ +   Y    N
Sbjct: 494 TFPRQMEALARKILDKPIEIMVGGKSVVCDDVNQNVVILEEHQKMLKLLELLGVYWENGN 553

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +         L    +    L G + Q +R + +   + G+ ++ +AT VAAR
Sbjct: 554 VLVFVDKQEKADDLVAQLMRSGYNCAPLHGGIDQFDRDSTILDYKAGKIKLLVATSVAAR 613

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFREANV 365
           G+D+  L LV++ +  ++ E+ +HR GRTGRAG KG +   I P   +R A  + R A  
Sbjct: 614 GLDIKKLILVVNYDCPNHYEDYVHRVGRTGRAGNKGYAYTFILPTGQERMAGEVCR-AFE 672

Query: 366 SVVWEPAPSVEAIRE 380
           +   EP   ++ + E
Sbjct: 673 TAGKEPPEQLKKMWE 687


>gi|237786051|ref|YP_002906756.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758963|gb|ACR18213.1| putative ATP-dependent RNA helicase [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 558

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 192/377 (50%), Gaps = 12/377 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I +AL+E G  +  ++QE  L   L  KD++  A+TG GKT+A+G+ L  
Sbjct: 93  TFEELGVAAEIVDALAEHGITHTFAIQELTLPLALDGKDLIGQARTGMGKTLAYGVPLLD 152

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--------VVAVCIGGV 112
            +  +         P AL +APTRELA QV  +L                  V    GG 
Sbjct: 153 RIFDDAAIPELDGTPRALVVAPTRELAYQVADDLTLAARHLANFNEEHRSLRVTTICGGH 212

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              ++   L+ G   +VGTPGRL D  + + LN+SH+  +VLDEADEMLDLGF  DIE I
Sbjct: 213 PFEKQIAQLREGTDCIVGTPGRLLDLCKNRELNLSHVAVLVLDEADEMLDLGFLPDIEKI 272

Query: 173 LDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           L   P+KR+ ++FSAT+   I         +   +R     ++  H+     A      +
Sbjct: 273 LQQVPEKRQTILFSATMPAPIMALARTFMNKPVHIRAEGTDDSTTHTTTKQVAFKNHKLN 332

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL+ H     I+F  T+ S +     LA+  F V A+ G+++Q  R  +L   
Sbjct: 333 KLATLSAILQAHNRGRTIIFTRTKRSAADVADDLAQRGFLVGAVHGDMAQPAREKSLNAF 392

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R  +  + +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG  G +V ++  
Sbjct: 393 RSKKIEILVATDVAARGIDVDDVTHVINYQVPDDAMTYVHRIGRTGRAGHTGTAVTLVGW 452

Query: 351 NMQRRAERLFREANVSV 367
           +   + + +  E ++++
Sbjct: 453 DEVTKWKVIDDELDLNI 469


>gi|255564033|ref|XP_002523015.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 956

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/347 (32%), Positives = 181/347 (52%), Gaps = 6/347 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I   + + G++  T +Q       LR +D++  A+TGSGKT+ + +    
Sbjct: 489 TFEASGFPPEILNDIRDAGFLAPTPIQAQTWPIALRNRDIVAIAKTGSGKTLGYLIPAF- 547

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L    R +P + P  L +APTRELA Q+  E+      + V      GG     + ++
Sbjct: 548 -ILLRQCRNNPQNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKGPQLKE 606

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  GA IVV TPGRL D +  K ++   +  +VLDEAD MLD+GF   I  I++  P +R
Sbjct: 607 LTRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRR 666

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LM++AT    +  +A +   + V+VNI S +    +  I     +V   ++++ +  I
Sbjct: 667 QTLMYTATWPKEVRKIANDLLVNPVQVNIGSVDELAANKSITQYVEVVPQMEKESRLGQI 726

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR     + ++   +   +         H F   A+ G+ SQ ER   L   R G++ + 
Sbjct: 727 LRAQERGSKVIIFCSTKRLCDQLARSIGHQFGAAAIHGDKSQGERDWVLNQFRSGKSPIL 786

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +ATDVAARG+D+ D+ +VI+ +  +  E+ +HR GRTGRAG  G++V
Sbjct: 787 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVNV 833


>gi|149908489|ref|ZP_01897151.1| ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149808323|gb|EDM68260.1| ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 432

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 189/365 (51%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   G+   T +Q   L   ++ KDV   AQTG+GKT+AF  A+   LL + 
Sbjct: 16  LNADVLSGLEASGFEYCTPIQALSLPFAIKGKDVAGQAQTGTGKTIAFLAAIFHHLLKKP 75

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P + P A+ +APTRELA+Q+ ++   +   TG+ + +  GG S   +R +L  G 
Sbjct: 76  VAEDRPKNKPRAIILAPTRELAIQIHKDALPIAKATGLKMGLVYGGESYDIQRDNLAKGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++GT GR+ D  + K +++S ++A+VLDEAD MLD GF  DI +++   P+ ++ L  
Sbjct: 136 DIIIGTVGRIIDFEKQKAMDLSGVEALVLDEADRMLDQGFIKDIRYLMRKMPEPKQRLNL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT +  I  LA  +  +   V + +E    S I       +  D+   +  ++    
Sbjct: 196 LFSATFTWDIRELAYQHMNEPEEVTVPAEKVTGSSITQELFHPSNDDKMALLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + AIVF +T+         LA    +V  L+G++ Q++R++ L+    G+  + +ATDV
Sbjct: 256 PERAIVFANTKHKCEEIWGHLAADKHRVGLLTGDIPQKKRNSILEQFTQGKLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  N  + +HR GRTGRAG +G S+    +        +    
Sbjct: 316 AARGLHIPAVSHVFNYDLPDNCGDYVHRIGRTGRAGAEGHSISFACEKYIYNLPAIEEFI 375

Query: 364 NVSVV 368
             ++ 
Sbjct: 376 EGTIP 380


>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
 gi|142982588|sp|A1D1R8|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
 gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
           NRRL 181]
          Length = 819

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/480 (24%), Positives = 208/480 (43%), Gaps = 32/480 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 305 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 364

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 365 PRKVPTSR---VAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRP 421

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + P+ R+ ++
Sbjct: 422 DVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQTML 481

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + S+     ++              R   ++ +   
Sbjct: 482 FSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCNE 541

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   V      +   L G +SQ++R  +++  R+G+    +AT
Sbjct: 542 IYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLAT 601

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  +   +
Sbjct: 602 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVK 661

Query: 362 EANVS----VVWEPAPSV------------EAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                    V     P+V            + I E   +  L+  +    +Q  + + + 
Sbjct: 662 AGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENMI 721

Query: 406 VLLAK---------HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              A+          + E+      ++    L  P +   V L +   +  DD+R    G
Sbjct: 722 KHEAEIMSRPKRTWFETERDKRAARKLGATELNGPSKKDKVKLSNKDKKRLDDARQRHEG 781


>gi|71999646|ref|NP_741347.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536860|gb|AAU05556.1| Hypothetical protein Y94H6A.5b [Caenorhabditis elegans]
          Length = 871

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 192/457 (42%), Gaps = 16/457 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++G+   T +Q   +   +  KDV+  ++TGSGKT AF + +   L    
Sbjct: 31  LDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL---- 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  + ++ L   TG+  A  +GG  +  +   +     
Sbjct: 87  -KRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL   I    L +S+++ VV DEAD + ++GF+D +   L   P+ R+ L+FS
Sbjct: 146 ILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   AK    D + V +  + +    +     +    ++  A   +        
Sbjct: 206 ATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRRMDREN 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VFC+T   V     +L         +  +L    R   +Q   + +  + + TDVA
Sbjct: 266 KQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVA 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+       +  +HR GR  RAGR G ++ +I  +       LF    
Sbjct: 326 ARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLG 385

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             + +    S     E    R+       DSI   E +    +   HD  +      +  
Sbjct: 386 KPINFASDKSEYKEDETLIGRVP------DSIVSLETEFFHSI---HDNNEDMQDLRQKA 436

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
              +       P        R + D R   V      
Sbjct: 437 TNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHP 473


>gi|326478694|gb|EGE02704.1| ATP-dependent RNA helicase has1 [Trichophyton equinum CBS 127.97]
          Length = 568

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/418 (27%), Positives = 202/418 (48%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 96  SLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--R 153

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +   AL I PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 154 SLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLNKGV 213

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++GTPGRL DH+R        +LK +V+DEAD +L++GF D++  I+   PK  R  M
Sbjct: 214 NVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTM 273

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   ++     R   + + L+
Sbjct: 274 LFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLK 333

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I 
Sbjct: 334 KNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLIC 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  +  +       L
Sbjct: 394 TDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGFINHL 453

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            REA V VV    P+   I  +   ++++    +L+    +  +      A H    +
Sbjct: 454 -REARVPVVEFEFPTKHIINIQSQLEKLISQNYYLNQSAKEGYRSYLHAYASHSLRSV 510


>gi|317491008|ref|ZP_07949444.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920555|gb|EFV41878.1| DEAD/DEAH box helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 442

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 121/412 (29%), Positives = 201/412 (48%), Gaps = 8/412 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKTVA+ L +   LL  
Sbjct: 10  ELDERLLDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTVAYLLPVLQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLVLTPTRELAMQVAEQAIELAKHTNLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHG 243
           SAT+                    A  +R+      +    A     +   + ++L+   
Sbjct: 188 SATLEGDAIKEFSERLLQDPVEIEADPSRRERKKIQQWYYRADTLEHKTKLLCHLLKEPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +++F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VTKSVIFVRKRERVHELVGWLREAGINSCYLEGEMVQAKRNEAMKRMLDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---- 359
           AARG+D+PD+  V + ++    +  LHR GRTGRAGRKG+++ ++  +      ++    
Sbjct: 308 AARGLDIPDISHVFNFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDHLLLGKISRYV 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             +    VV E  P+ +   E++  +  +  L     + DE+K    +  +H
Sbjct: 368 EEQIKSRVVDELRPTTKPPSEKNKGKPSKKTLLKRQEKKDEEKKDKKVKVRH 419


>gi|302759400|ref|XP_002963123.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
 gi|302796878|ref|XP_002980200.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300151816|gb|EFJ18460.1| hypothetical protein SELMODRAFT_153756 [Selaginella moellendorffii]
 gi|300169984|gb|EFJ36586.1| hypothetical protein SELMODRAFT_165735 [Selaginella moellendorffii]
          Length = 574

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 122/394 (30%), Positives = 202/394 (51%), Gaps = 24/394 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +   + +A+++ GY N + +Q A +   L+++DV+  A+TGSGKT AF L +
Sbjct: 153 MRNWEEGGLSTELLKAVNKAGYKNPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 212

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  L      + A  P A+ +APTRELA Q+  E         + V   +GG S+  
Sbjct: 213 LTYISRLPPMTEENEAEGPYAVVMAPTRELAQQIEEETVKFAHYLDIHVVSIVGGQSIEE 272

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------- 169
           +   L+ G  IV+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +       
Sbjct: 273 QGFKLRQGCEIVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAM 332

Query: 170 ----------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                     +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I
Sbjct: 333 PSSNLKPENEDAELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLI 392

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               ++V  S++ + +  +L     K AIVF +T+ +     + L +  ++V  L G  +
Sbjct: 393 TQNVLMVKDSEKLDRLQRMLNDLADKTAIVFVNTKKAADGLARQLDKLGYRVTTLHGGKT 452

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  +L+  R  R    +ATDVA RGID+PD+  VI+ ++ +N E   HR GRTGRAG
Sbjct: 453 QEQREISLEGFRSKRYNCLVATDVAGRGIDIPDVAHVINFDMPNNIEMYTHRIGRTGRAG 512

Query: 340 RKGMSVFVIP---QNMQRRAERLFREANVSVVWE 370
           + G++   +      +    +++  ++N  V  E
Sbjct: 513 KTGVATTFLTLGDTEVFYDLKQMLVQSNSPVPPE 546


>gi|291404256|ref|XP_002718616.1| PREDICTED: nucleolar protein GU2-like [Oryctolagus cuniculus]
          Length = 780

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 138/581 (23%), Positives = 237/581 (40%), Gaps = 38/581 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  VQ    +     +D++  A+TG+GKT +F + L   
Sbjct: 186 FSNFPISEETIKLLKARGVTFLFPVQAKTFHHVYSGRDLIAQARTGTGKTFSFAIPLIEK 245

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 246 LQGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLA--VACFYGGTPYGNQIERM 303

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH+    L++S LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 304 RNGIDILVGTPGRIKDHLENGKLDLSKLKHVVLDEVDQMLDMGFADQVEDILKVAYKKDS 363

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A                   +         +    +  L+ + +      
Sbjct: 364 EDNPQTLLFSATCPHWVFNVAKKYMKATYEQVDLIGKKTQKTAITVEHLAIKCHWSQRAA 423

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        IVFC T+      ++  +          G++ Q++R   L+  R
Sbjct: 424 VIGDVIRVYSGHQGRTIVFCETKKEAQELSQNSSIKQDAQSLH-GDIPQKQREITLKGFR 482

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 483 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 542

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 543 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 599

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 600 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF--VTMILRCSIEMPNISYAWKELKE 657

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 658 QLGEDVDSKIKGMV-FLKGKLGVC---------------FDVPTAAVTEIQEKWHDSRRW 701

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +      +  +DG ++ F+  +G S+
Sbjct: 702 QLSVAT-EQPELEGPREGYGAFRGQRDG-SRGFRGQRGGSR 740


>gi|307111894|gb|EFN60128.1| hypothetical protein CHLNCDRAFT_56582 [Chlorella variabilis]
          Length = 863

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 124/403 (30%), Positives = 194/403 (48%), Gaps = 27/403 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ + +A+   GY   + +Q A +   L+ +DV+  A+TGSGKT AF L +   +  +
Sbjct: 445 NLPKSLRKAVERAGYKKPSPIQMAAIPLGLQFRDVIGIAETGSGKTAAFVLPMLVYIEKQ 504

Query: 66  NDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                     A  P ++ +APTRELA Q+  E   L   T   V   +GG S+  +   L
Sbjct: 505 PPMLGNPDIEAEGPYSVVLAPTRELAQQIEEEARNLAHYTEFRVVSVVGGQSIEDQGVAL 564

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR- 180
           + G  IVV TPGRL D I      ++    VVLDEAD M+DLGF      ++        
Sbjct: 565 RKGCEIVVATPGRLVDCIERSYAVLNQCNYVVLDEADRMIDLGFEPQASAVMGVLDAMPS 624

Query: 181 -------------------RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                                 MFSAT+ PA+  LA+ Y +  V + I +  +   +I  
Sbjct: 625 SNLKPENEDEPLESNRVYRTTYMFSATMPPAVERLARKYLRRPVVITIGTAGKATDNITQ 684

Query: 222 RAVLVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R ++V  +++  ++   L      +  IVF +T++      + L    ++V  L G  SQ
Sbjct: 685 RVIMVKENEKARSLEQELNAMGDDQRIIVFANTKSQCDAVARQLGNMDYRVTMLHGGKSQ 744

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R  +++  R+    V +ATDVA RGID+P++ LVI+ ++++  E   HR GRTGRAGR
Sbjct: 745 DQREESIKGFREDVYNVLVATDVAGRGIDVPNVALVINYDMANTIEQYTHRIGRTGRAGR 804

Query: 341 KGMSVFVIPQNMQRRAERLFR--EANVSVVWEPAPSVEAIRER 381
           KG +V  +          L +  E N + V       EA R++
Sbjct: 805 KGTAVTFLTLKDSELFYDLKKFLEENKAAVPSQLAQHEAARQK 847


>gi|313764129|gb|EFS35493.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|314929970|gb|EFS93801.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314972830|gb|EFT16927.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|328753876|gb|EGF67492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
          Length = 560

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +   + +  
Sbjct: 409 TRWKLINKALTLELSE 424


>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
 gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
           43827]
          Length = 609

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 7/359 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I  AL E G     ++QE  L   L  +DV+  A+TG+GKT+ FG+ L   ++   D 
Sbjct: 61  EEIVRALGEAGIERAFAIQELTLPLALAGEDVIGQARTGTGKTLGFGIPLLQRVITPGDG 120

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTREL +QV  +L        V V    GG     +   L+ G  +V
Sbjct: 121 -----TPQALVVVPTRELCLQVTHDLTDASKHMDVRVLAIYGGRPYEPQIAALRKGVDVV 175

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D    + L +  ++++VLDEADEMLDLGF  DIE +L   P +R+ ++FSAT
Sbjct: 176 VGTPGRLLDLAEQRHLVLGKVRSLVLDEADEMLDLGFLPDIERVLRMVPDERQTMLFSAT 235

Query: 189 ISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +   I T       Q   VR         H   +         D+   +  +L+      
Sbjct: 236 MPGPIITLARTFLNQPTHVRAEENDAGAVHERTEQFIYRAHALDKVELLARVLQARDRGL 295

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +++F  T+ +  +    +AE  F V A+ G+L Q  R  AL+  R G+  V +ATDVAAR
Sbjct: 296 SMIFTRTKRTAQKVADDMAERGFAVAAVHGDLGQGAREQALRAFRSGKIDVLVATDVAAR 355

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           GID+  +  V++ +   + +  +HR GRTGRAGR G++V ++  +   R + +    N+
Sbjct: 356 GIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDEIPRWQMISDALNL 414


>gi|222153538|ref|YP_002562715.1| helicase [Streptococcus uberis 0140J]
 gi|222114351|emb|CAR43072.1| putative helicase [Streptococcus uberis 0140J]
          Length = 447

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 197/460 (42%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL    +   T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKEYIQKALDAIRFQEPTEVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLKEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           +          A+  AP+RELA Q+      + + +   + +         + +  +   
Sbjct: 67  SQDV------QAVITAPSRELATQIFEAARQIASYSEEEIRLANYVGGTDKLRQIEKLQV 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIVVGTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVVGTPGRIYDLVQSGHLAIHKAATFVVDEADMTMDMGFLDTVDKIASTLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +E      ID   +     + +  I+  L+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLSNPVMEQIKTETVISDTIDNWLLSTKGRNNNEQILMTLKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+       + L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYLAMIFVNTKERADELHQFLISNGLKVAKIHGGVPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L+D  F DS   D ++  +    K D E I     +
Sbjct: 360 --MGIAFVP-------------KVLKDGEFQDSYDRDRRQNREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I  V     R   R +SRA          
Sbjct: 405 KKKVKPAYKKKIQWVVDEKRRKERRAESRAKGRAARKAKK 444


>gi|195474630|ref|XP_002089594.1| GE19181 [Drosophila yakuba]
 gi|194175695|gb|EDW89306.1| GE19181 [Drosophila yakuba]
          Length = 782

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|322698059|gb|EFY89832.1| ATP-dependent RNA helicase HAS1 [Metarhizium acridum CQMa 102]
          Length = 581

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/481 (24%), Positives = 206/481 (42%), Gaps = 19/481 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+ +   +   +A++E G+  +T++Q   + P L  KDVL +A+TGSGKT+AF +    
Sbjct: 105 MFDQLKLSEKTMKAINEMGFTKMTAIQRTAIPPLLAGKDVLGAAKTGSGKTLAFLIPAIE 164

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     RF P +    + ++PTRELA+Q+      L         + IGG +   E   
Sbjct: 165 IL--SALRFKPRNGTGVIVVSPTRELALQIFGVARELMQHHSQTYGIVIGGANRKAEAEK 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G ++++ TPGRL DH+        +LK++V+DEAD +L++GF D+I  I+       
Sbjct: 223 LSKGVNLLIATPGRLLDHLLNTPFVFKNLKSLVIDEADRILEVGFEDEIRQIVKVLSNDD 282

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--A 234
           R  M  +            ++       + V+   +      ++   VL     R     
Sbjct: 283 RQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVDGLEQGYVLCDADKRFILLF 342

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                     K  IVF S+  SV  + ++L      V+ L G+  QQ+R+N      +  
Sbjct: 343 SFLKRMKEKKKKVIVFFSSCNSVKYYAELLNYIDCPVLDLHGKQKQQKRTNTFFEFSNAE 402

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQ 353
             + I TDVAARG+D+P ++ ++  +   N  + +HR GRT R A  KG S+  +  N  
Sbjct: 403 HGILICTDVAARGLDIPAVDFIVQFDPPDNTRDYIHRVGRTARGANTKGRSLLFLQPNEV 462

Query: 354 RRAERLFREANVSVVWEPAPS--VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                L + A V VV    P+  ++ ++    + ++    +L     +  K      A H
Sbjct: 463 GFLSHL-KAARVPVVEFEFPTKHIKNVQS-SLEGLIGKNYYLQQSAKEAFKSYLHAYASH 520

Query: 412 DPEKIA----AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
               +        +R+ ++   A      ++L     R R   R        +   +G  
Sbjct: 521 GLRSVYDVHKLDLVRVAKSFGFATPPRVDINLGQSMSRNRVQGRRSYGSQPRQPVRQGGR 580

Query: 468 W 468
            
Sbjct: 581 R 581


>gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
          Length = 560

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 197/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 409 TRWKLINKALNLELSE 424


>gi|221113161|ref|XP_002160326.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX41
           [Hydra magnipapillata]
          Length = 605

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 190/382 (49%), Gaps = 15/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P+ I + L  +   + T +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 164 LKRFKDMKFPRSILQCLKRKDIKSPTPIQMQGLPTVLSGRDMIGIAFTGSGKTLVFTLPI 223

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA------VCIG 110
               + +     F     P  L IAP+RELA Q    +        +  A      +CIG
Sbjct: 224 VMFCVEQEKVLPFRKGEGPYGLLIAPSRELAKQTYDIILEFSESLRMDGAPTLKILLCIG 283

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G SV  +  ++++G HIVV TPGRL D +  K + +   + + LDEAD M+D+GF DD+ 
Sbjct: 284 GTSVKDQAENIKHGVHIVVATPGRLMDLLNKKLITLDVCRFLCLDEADRMIDMGFEDDVR 343

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   A++     V VN+        DI      V   +
Sbjct: 344 TIFSYFKGQRQTLLFSATMPKKIQNFARSALVQPVTVNVGRAGAASLDIIQEVEYVKQEE 403

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++F   ++ V    + L     + VA+ G+ +Q+ER  ++   
Sbjct: 404 KILFLLKCLQKTAPP-VLIFAEKKSDVDDIHEYLLLKGVEAVAIHGDKAQEERHRSVTQF 462

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+ +  V +ATDVA++G+D P+++ VI+ ++  + EN +HR GRTGR+G+ G +   I +
Sbjct: 463 RERKKDVLVATDVASKGLDFPNIQHVINYDMPDDIENYVHRIGRTGRSGKTGYATTFINK 522

Query: 351 NMQR----RAERLFREANVSVV 368
           N +       + L  EA   V 
Sbjct: 523 NCEESVLMDLKHLLIEAKQKVP 544


>gi|71665094|ref|XP_819521.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884825|gb|EAN97670.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 511

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 214/450 (47%), Gaps = 14/450 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A +E G+ N T +Q A +      +D++  AQTGSGKT A+ L L + LL + 
Sbjct: 44  LCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ- 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L + PTRELA QV  +   L    G+ VA  +GG  +  +  +L    H
Sbjct: 103 ---SKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPH 159

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ DH++      +  L A+VLDEAD+MLD+ +  +I+ IL+  P  R+ ++F
Sbjct: 160 VVVGTPGRIKDHLQNTKGFQLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLF 219

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L K    D V + +  +N     +    V    +     +   L      
Sbjct: 220 SATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLPYLHLYLTRETGN 279

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC + A V R T  L     Q + L G + Q  R+ AL   ++G+ R+ + TDVA 
Sbjct: 280 HILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKVRILVCTDVAQ 339

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+   ++V++  L    E+ +HR GRT RAG +G +V +I Q      +R+     V
Sbjct: 340 RGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRIEATTGV 399

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                P      ++E D   +LQ  +    ++I+   +   +    K   + + A   + 
Sbjct: 400 KCEEWP------VQEGDVAAVLQRVEDAEQETIKEIRENEQESKFEKEVRQLVTAKKGKR 453

Query: 424 HRA-GLCAPEEITPVSLVSGRDRFRDDSRA 452
            R  G    ++     +     R R ++ A
Sbjct: 454 ERGEGDMGYDDSKHGKVDFATLRLRRENEA 483


>gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
           RUH2202]
          Length = 383

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 196/371 (52%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKKAIDALGFKQMTPIQQKVLKYTLGGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   VV +  G     ++++
Sbjct: 65  LLHNPIQEQRFRGEPRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKKQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT S  +  LA+ +  + + V I  E + ++D++ R  +VA  D+   + +
Sbjct: 185 EERQTLMFSATFSYDVLNLARQWLFEPITVEIEPEQKTNNDVEQRVYVVAKQDKYRLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+  +
Sbjct: 245 ILREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEIAQDKRLKMLDQFKQGKNNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNYTLPEQSDDYVHRIGRTGRAGSQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|154345840|ref|XP_001568857.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066199|emb|CAM43989.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 571

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 3/347 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ +   L  +G+   T +Q    +  L  +D++  A+TGSGKT+AF +   + +  + 
Sbjct: 111 VPQYLKAKLLAQGFKAPTPIQAQSWSIVLSGRDLVGVAKTGSGKTLAFIVPALAHIALQE 170

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ + +APTRELA Q+ +E   +  ++ +      GG     +   L+ G H
Sbjct: 171 P-LKMGDGPMVIVLAPTRELAQQIEQETIKVLPQS-IRCGCIYGGAPKGPQLGLLRQGVH 228

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  K +N+  +  +VLDEAD MLD+GF   +  I       R+ LMFS
Sbjct: 229 ILVATPGRLIDFMEIKRVNLLRVTYLVLDEADRMLDMGFEPQVRAICGQIRPDRQTLMFS 288

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    I  LA ++QK+ VR+N+ S     + D+    +L + + + + +  ++  H  +
Sbjct: 289 ATWPRDIQNLAASFQKNWVRINVGSMELLANKDVTQHFILTSEAAKLDELKRLMERHRNQ 348

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VFC T+ +       L  +    +A+ G+  Q++R   L+  R       +ATDVAA
Sbjct: 349 RVLVFCKTKKTADYLEFQLKRNGVDCMAIHGDKEQRQREFILERFRKDSRLCVVATDVAA 408

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           RG+D+ +LE V++ +     ++ +HR GRTGRAG KG S  +I ++ 
Sbjct: 409 RGLDIKELETVVNYDFPMQIDDYVHRIGRTGRAGAKGASFTMITKHE 455


>gi|327467234|gb|EGF12738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK330]
          Length = 447

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   + V           +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEREIRVANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLLGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|261409198|ref|YP_003245439.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
           Y412MC10]
 gi|261285661|gb|ACX67632.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
          Length = 448

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 189/363 (52%), Gaps = 6/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +   L+E G    + VQ   + P L  KDVL ++QTG+GKT+A+ L +   +  E 
Sbjct: 11  IAEDLSSRLAEFGIATPSPVQAEAIPPILEGKDVLATSQTGTGKTLAYLLPVLQGIDPE- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L +APT+ELAVQ+ RE E      G+ V   IGG +  R+   L+    
Sbjct: 70  -----IKGAQKLILAPTQELAVQIVRESERYGEARGIGVLGLIGGAAAKRQIEKLRLHPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ + I  + L +  +  +V+DE D++ +LG   D++ IL S+ + R+++  S
Sbjct: 125 LIVGTPGRVRELIEIRKLKMHQVTTIVVDEVDQVFNLGGAGDVDRILRSALRDRQLVFLS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP    L K      V + I  E R  S +++   +    D+ + +  ++R++    
Sbjct: 185 ATVSPETAELVKKEMDQPVEIGIDPERRTPSALEHYYFVSEERDKLDMLRRVVRHYNPDR 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +    ++     L        AL G+  +  RS  L   R+GR ++ +A+DVAAR
Sbjct: 245 AIVFVNATEDLAEVEAKLNYLGLNAAALYGDADKMTRSRVLNAFREGRTKLLVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L +VI+ +   + E+  HR+GRTGR GR GM++ ++         +  RE  +S
Sbjct: 305 GLDIEGLGMVINYDPPIDAEHYTHRAGRTGRMGRSGMAITLVTDRQTFIMRKFNRELGIS 364

Query: 367 VVW 369
           +  
Sbjct: 365 IEE 367


>gi|282863822|ref|ZP_06272880.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561523|gb|EFB67067.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 496

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 127/379 (33%), Positives = 190/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 60  DLPAPLLATLGAEGVTEPFPIQAATLPNALVGRDVLGRGRTGSGKTLAFGLALLAR---T 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PLAL + PTRELA QV   L        +  A  +GG+S+ R+   L+ GA
Sbjct: 117 AGRRADARRPLALVLVPTRELAQQVTDALAPYARSLKLRTATVVGGMSIGRQASALRAGA 176

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +      +  +   VLDEAD+M DLGF   +  +LD      + ++F
Sbjct: 177 DVVVATPGRLADLVGRGDCRLDRVAVTVLDEADQMADLGFLPQVTELLDLVRPDGQRMLF 236

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 237 SATLDREVDQLVRRYLHDPVVHSVDPAAGTVTTMEHHVLHVQGADKYATTTE--IAARDG 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T  L     +  AL G  SQ +R+  L   R G   V +AT+VAA
Sbjct: 295 RVIMFLDTKHAVDRLTAHLRGSGVRAAALHGGKSQPQRTRTLDRFRTGDLTVLVATNVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++P++ LHR+GRT RAG  G  V ++  + +R   RL  EA V
Sbjct: 355 RGIHVDDLDLVVNVDPPTDPKDYLHRAGRTARAGESGKVVTLVLPDQRRELTRLMTEAGV 414

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P V  +R  +A+
Sbjct: 415 R------PQVTQVRSGEAE 427


>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
 gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
          Length = 784

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 123/481 (25%), Positives = 222/481 (46%), Gaps = 26/481 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQETVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A  SV     P    I E+   ++      + +I  +E+    +   +    K     L
Sbjct: 521 NAESSVKNRIIPP--EIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQLSKTERKLL 578

Query: 422 ------------------RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                                R  L + +E +  +  +G+ +     +  + GG   D  
Sbjct: 579 GQPNERRTWFQTKQQRENEKARLALTSNDEESKPAPAAGKGKTAGKRKRPEYGGDGEDGP 638

Query: 464 K 464
            
Sbjct: 639 P 639


>gi|164658197|ref|XP_001730224.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
 gi|159104119|gb|EDP43010.1| hypothetical protein MGL_2606 [Malassezia globosa CBS 7966]
          Length = 653

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/379 (29%), Positives = 185/379 (48%), Gaps = 17/379 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +    Y   T VQ+  +      +D++  AQTGSGKT  F   + S L    
Sbjct: 189 VDEHLISNIRLARYSTPTPVQKYSIPIVGAGRDLMGCAQTGSGKTGGFLFPILSALFTHG 248

Query: 67  DRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               P            P  L +APTREL  Q+  E      ++ V  AV  GG  +  +
Sbjct: 249 PPPMPPQPPMYGRQKAFPSVLILAPTRELVSQIHEEARKFTYRSWVRPAVVYGGAEMGAQ 308

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI----L 173
            R ++ G  ++  TPGRL D I    +++++++ +VLDEAD MLD+GF   I  I     
Sbjct: 309 LRQIERGCDMLSATPGRLVDLIERGRISLANVRFLVLDEADRMLDMGFEPQIRRIVLGED 368

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 R+ LMFSAT    I  LAK++ K+ V +++        +I  +   V   D+ +
Sbjct: 369 MPGVMDRQTLMFSATFPQNIQMLAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDRDKQS 428

Query: 234 AIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            ++++L     +   ++F  T+      +  L        ++ G+ +Q+ER  AL + R 
Sbjct: 429 MLLDVLAAMPTSGLTLIFVETKRMADMLSDFLIYSNIAATSIHGDRTQREREYALDLFRS 488

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GR  + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  G +     +N 
Sbjct: 489 GRTPILVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNIGHATAFFNRNN 548

Query: 353 Q---RRAERLFREANVSVV 368
           +   R   +L +EAN  V 
Sbjct: 549 RNIVRDLVKLLQEANQEVP 567


>gi|167527009|ref|XP_001747837.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773586|gb|EDQ87224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 532

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 11/365 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++   L    Y   T VQ+  +     ++D++  AQTGSGKT AF + + + +    
Sbjct: 167 LCELMTGNLELARYTVPTPVQKYSIPIVQAKRDLMACAQTGSGKTAAFLVPILNRVYETG 226

Query: 67  DRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               P +A      P+AL +APTRELA+Q+  E +    ++ V +    GG S   + +D
Sbjct: 227 PVPPPPNARRSQQFPVALILAPTRELAIQIYGEAQKFSYRSRVRICCVYGGASPRDQIQD 286

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I  I++     +
Sbjct: 287 LRRGCQLLVATPGRLVDFMERGVIGLDSIRFLVLDEADRMLDMGFEPQIRRIVEEDNMPQ 346

Query: 181 ----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + LMFSAT    I  LA+++  D V +++        +I      +  +D+  +++
Sbjct: 347 VGIRQTLMFSATFPKDIQMLAQDFLDDYVHLSVGRVGSTSENIQQIVHWIDEADKRPSLL 406

Query: 237 NILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++    +++  ++F  T+ +       L        ++ G+ +Q ER  AL   R GR 
Sbjct: 407 DLISAASSEDLFLIFVETKKAADALEYYLTMQGRPATSIHGDRTQYEREEALADFRAGRR 466

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGRAG KG +V       +  
Sbjct: 467 PILVATAVAARGLDIPNVKHVINFDLPSDIDEYVHRIGRTGRAGHKGTAVSFFNDKNRNV 526

Query: 356 AERLF 360
           A  L 
Sbjct: 527 ARDLL 531


>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380651|sp|A7TJM9|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 752

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 223/457 (48%), Gaps = 16/457 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + LS+ GY   + +Q A +   L  KD++  A TGSGKT AF + +   LL + 
Sbjct: 238 LSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIERLLYKP 297

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            + +   +   + + PTRELA+Q+    + +    +G+   + +GG+++ ++ ++L+   
Sbjct: 298 AKVA---STRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKTRP 354

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGR  DH       N+  ++ +V+DEAD ML+ GF++++  IL   P KR+ L+
Sbjct: 355 DIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQTLL 414

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG- 243
           FSAT++  I +L     +  VR+ I    +  + +    V +   D     +        
Sbjct: 415 FSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLIRKL 474

Query: 244 ----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                K  +VF + +    +   +L     +V  L G L+Q++R  ++   +     V I
Sbjct: 475 DGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPVLI 534

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   +
Sbjct: 535 CTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--SI 592

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            R A  SV    + +    R  +  +I +    ++S       + D+L+ +   ++I   
Sbjct: 593 VRSAIKSVEESSSKNKAVSRNVEWTQIEETNKLVESFGET---IDDILVEEKQEKEILRA 649

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
            +++ R G    +    +     R  F+ ++      
Sbjct: 650 EMQL-RKGENMIKHKKEIQSRPKRTWFQSEAEKKNAK 685


>gi|57113867|ref|NP_001008986.1| ATP-dependent RNA helicase DDX3Y [Pan troglodytes]
 gi|51315848|sp|Q6GVM6|DDX3Y_PANTR RecName: Full=ATP-dependent RNA helicase DDX3Y; AltName: Full=DEAD
           box protein 3, Y-chromosomal
 gi|48728366|gb|AAT46349.1| DDX3Y [Pan troglodytes]
          Length = 660

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 184/380 (48%), Gaps = 20/380 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +   
Sbjct: 187 EIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPG 246

Query: 69  FS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +                P++L +APTRELAVQ+  E      ++ V   V  GG  + +
Sbjct: 247 EALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ 306

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I++  
Sbjct: 307 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 366

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                     +MFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 367 TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKR 426

Query: 233 NAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + +++I          +VF  T+         L    +   ++ G+ SQ++R  AL   R
Sbjct: 427 SFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 486

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G++ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  G++     + 
Sbjct: 487 SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEK 546

Query: 351 --NMQRRAERLFREANVSVV 368
             N+ +    L  EA   V 
Sbjct: 547 NINITKDLLDLLVEAKQEVP 566


>gi|194748100|ref|XP_001956487.1| GF25239 [Drosophila ananassae]
 gi|190623769|gb|EDV39293.1| GF25239 [Drosophila ananassae]
          Length = 535

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 166/433 (38%), Gaps = 23/433 (5%)

Query: 1   MKIFENIP------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  FE++         + + +  RG+   T +Q   L   L+ + ++  A TGSGKT+AF
Sbjct: 107 LTSFEDLTKDYKLLPRLQQNVLSRGFAQPTPIQMQALPVLLQRRALMACAPTGSGKTLAF 166

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              L + L     R    +   AL +APTRELA Q+ RE   L  +TG+           
Sbjct: 167 LTPLINGL-----RAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEA 221

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            ++        + ++ +       +  +   +  L  V     DE   L       F   
Sbjct: 222 KQKHGTECKQRYDILVSTPNRVRFLLQQQPPLLDLSQVEWFVLDEADRLMEEGQNNFKEQ 281

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLV 226
                         ++    T      K A+R                  S       + 
Sbjct: 282 LDDIYAACSNPGKCVAFFSATYTVPVAKWALRHLKNLVRVTIGIQNTATDSVQQELLFVG 341

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + S +  A+ +++R       +VF  ++    +  + L      V  +  E SQ +R N 
Sbjct: 342 SESGKLVAVRDLVRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNC 401

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  R+G   V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++ 
Sbjct: 402 VRAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAIT 461

Query: 347 VIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              Q+     R   ++ + +  +V       ++ +R+ +A+   + PL  + I    +  
Sbjct: 462 FFTQDDTANLRSIAQIIKNSGGTVPEYML-QMKKVRKSEAKMRAKKPLDREDISTKIRPE 520

Query: 404 VDVLLAKHDPEKI 416
                 +++  ++
Sbjct: 521 GKEESKQNELTEL 533


>gi|86132787|ref|ZP_01051379.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85816741|gb|EAQ37927.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 454

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 203/454 (44%), Gaps = 12/454 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL + GY   T +Q   L P +   DV+  AQTG+GKT A+ L +  TL   
Sbjct: 9   NLDKFLWNALDDMGYTQPTPIQVDALAPVMSGSDVVGIAQTGTGKTFAYLLPILRTL--- 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +S    P  L + PTREL +QV  ELE L     V +A   GG +++ ++  +  G 
Sbjct: 66  --PYSRQENPRVLILVPTRELVLQVVNELEKLTKYIDVRIAGVYGGSNINTQKALIAQGQ 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D    + L +  ++ VV+DE D MLDLGFR  +  I D  PK+R+ +MF
Sbjct: 124 DIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQHIMF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI--LRYH 242
           SAT++  +  L K+Y      + +A       +I      +     + N I+        
Sbjct: 184 SATMTEDVDALIKDYFNKPKFIKVARSGTPLENIKQVGYKIPNFYTKVNFILEELASAKA 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +     R +   + K+      QV  +    +Q  R N++    +G+ R+ +ATD
Sbjct: 244 YPKTLLFVRDKRMADRLYLKLEEAFPGQVDLIHSNKTQNYRINSINAFSEGKVRMMVATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ D+  VI+      PEN LHR GRTGRA ++G S+ +         E +   
Sbjct: 304 VMARGLDIDDITHVINVNTPRFPENYLHRIGRTGRAQKEGTSIVLSTPAEDAFLEEIEAL 363

Query: 363 ANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             V V  E  P  V+  +E   +   +     +  + ++        A H+  +      
Sbjct: 364 MGVKVPIETLPEDVQISKELTPEERPEAKEIFNPHKWNKNDEDAPGPAFHEKSE---KNS 420

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
           +++  G    E          R     + R  + 
Sbjct: 421 KVNLGGSYRREIAKKYKKPKTRGDKNYNKRNKRK 454


>gi|209418026|gb|ACI46551.1| RE58551p [Drosophila melanogaster]
          Length = 609

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/424 (21%), Positives = 166/424 (39%), Gaps = 19/424 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + + L  R + + T +Q   L   L+ + ++  A TGSGKT+AF   + + L 
Sbjct: 139 FKMLPR-LQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL- 196

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    +   AL +APTRELA Q+ RE   L  +TG+            ++      
Sbjct: 197 ----RAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECK 252

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +  L  V     DE   L       F            
Sbjct: 253 QRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACS 312

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
             +  ++    T      K A+R              +   +       + +   +  AI
Sbjct: 313 NPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAI 372

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G  
Sbjct: 373 RDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSI 432

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q     
Sbjct: 433 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSN 492

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            R    + + +  +V       ++ +R+ +A+   ++PL  + I   + +       KH 
Sbjct: 493 LRGIALIIKNSGGTVPEYML-QMKKVRKSEAKMRAKEPLDREDI-STKIRPETKGDEKHK 550

Query: 413 PEKI 416
             K+
Sbjct: 551 STKL 554


>gi|109130176|ref|XP_001087519.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Macaca
           mulatta]
          Length = 592

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 169/372 (45%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + ++++  G+V  T +Q       L+  D++  AQTG+GKT+++ +     + 
Sbjct: 187 FQQYPD-LLKSITRVGFVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHVD 245

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E      K    + +C G   + +   D+  
Sbjct: 246 SQPLSREQRNGPGMLVLTPTRELALQVEAECSKYSYKDLKSICICGGRNRIGQI-EDISK 304

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 305 DVDIIIATPGRLNDLQMNNSVNLRSITYLVMDEADKMLDMEFEPQIMKILLDVHPDRQTV 364

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA++Y +   +           + +    ++    ++       +   
Sbjct: 365 MISATWPDTVRRLARSYLKDPMIVYVGNLNLAAVNTVKQNIIVTTEEEKRALTQEFIENM 424

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S +      +         V +L G   + ++  ALQ    G  ++ I T
Sbjct: 425 SPNDKVIMFVSQKRIADDLSSDFNIQGISVESLHGNSEESDKERALQDFESGNIKILITT 484

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARG+D+ D+  V + +   N E  +HR GR GRAG+ G SV +I Q   + A  L +
Sbjct: 485 DLVARGLDVNDVTHVYNYDFPWNIEEYVHRVGRIGRAGKTGTSVTLITQRDAKMAGELIK 544

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 545 ILERANQSVPED 556


>gi|311244125|ref|XP_001925444.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Sus
           scrofa]
          Length = 643

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 188/378 (49%), Gaps = 10/378 (2%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+V+   + + G+   T +Q       L+  D++  AQTG+GKT+++ +     + 
Sbjct: 244 FQCYPEVMI-NIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVD 302

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG     + +DL  
Sbjct: 303 SQP---VARNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCVYGGGDRDGQIKDLLK 358

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      + +  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 359 GVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTV 418

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++ + I   +   
Sbjct: 419 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESM 478

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  I+F S +A     +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 479 SPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDRERALKNFKTGKVRILIAT 538

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAER 358
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAGR G+S+ +I ++  +       
Sbjct: 539 DLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIH 598

Query: 359 LFREANVSVVWEPAPSVE 376
           +   AN S+  +     E
Sbjct: 599 ILERANQSIPEDLVEMAE 616


>gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
 gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
          Length = 379

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 107/379 (28%), Positives = 190/379 (50%), Gaps = 5/379 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + +  A+ +  Y     +Q   +   L  KD+L  A TGSGKT ++ L +
Sbjct: 2   IMNFSDLGLNKQLLTAIEKAKYTKPYPIQIEAIPAFLNRKDILGIAPTGSGKTASYILPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  + +  S     L L   PTRELA QV +  +         +        V    
Sbjct: 62  LQLLQGKKEHRSRNIPVLVL--VPTRELAAQVAQVADNFSRFLERRIKTLAVFGGVSINP 119

Query: 119 RDLQ-NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + ++ NG  I+V TPGRL D +    L+IS ++ +VLDE D++L++GFR++++ IL   P
Sbjct: 120 QMMKLNGTDILVATPGRLLDLLSKNALSISDVEILVLDEMDKVLNMGFREEVDQILADIP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R+ ++FSAT    +  +  +  KD  R+++ +     + I+  A  ++   +   + +
Sbjct: 180 KNRQTILFSATQDETLEEVISSLLKDPKRISVKAAEVDMNLINQYAYRISAEKKGPLLRH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I+        +VF S+  + +   + L ++    +A  G+ SQ  R+ AL   + G+ RV
Sbjct: 240 IINSGDWSQILVFTSSIRTANNLVQKLVKNGIDALAFHGDKSQGARTEALARFKSGKTRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+A RGID+  L LVI+ EL  +P++ +HR GRTGRAG  G ++ +I +      +
Sbjct: 300 LVATDLAGRGIDIQFLPLVINFELPRSPKDYVHRVGRTGRAGATGEAISLITEEDLHHFK 359

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    V       ++
Sbjct: 360 IIQKKMKKHVQLRSTDDLD 378


>gi|299115674|emb|CBN75874.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 699

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/389 (29%), Positives = 191/389 (49%), Gaps = 22/389 (5%)

Query: 5   ENIPQVI----GEALSE--------RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           EN+P+ I     + L E         GY   T VQ+  +   +  +D++  AQTGSGKT 
Sbjct: 202 ENVPEPIDSFELDMLGEDLMRTTNLCGYTKPTPVQKYSIPIGISNRDLMACAQTGSGKTA 261

Query: 53  AFGLALASTLLAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            F      +LL       P        P+AL +APTRELA Q+  E      +TG+   V
Sbjct: 262 GFLFPTLISLLRRGGPQYPNDGRRKSYPVALVLAPTRELASQIYDEARRFCYRTGIAPVV 321

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  V  + R+L+ G  ++V TPGRL D +    ++++ ++ +VLDEAD MLD+GF  
Sbjct: 322 IYGGADVRSQFRELERGCDLLVATPGRLVDLLERGRISLACIQFLVLDEADRMLDMGFEP 381

Query: 168 DIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I      +   +R+  MFSAT    I  LA ++  D + + +        D+    
Sbjct: 382 QIRRIVEEEDMTRVGERQTFMFSATFPREIQQLAADFMTDYIFLAVGRVGSASKDVTQTV 441

Query: 224 VLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V  + +   ++  L    A    +VF  T+ +       L++  +   ++ G+ +Q+E
Sbjct: 442 EYVDQNQKFPMLLRTLNNLEATGLVLVFTETKRNADYLEYQLSDQGYPASSIHGDKTQRE 501

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R +AL++ + G   + +ATDVAARG+D+ ++  VI+ +L +N ++ +HR GRTGR G  G
Sbjct: 502 REDALRLFKTGTTPILVATDVAARGLDINNVTQVINYDLPTNIDDYVHRIGRTGRVGNVG 561

Query: 343 MSVFVIPQNMQRRAERLFREANVSVVWEP 371
            ++  + +  +  A  L+     +    P
Sbjct: 562 NALSFMNEKNRNVARELYEMLGENQQECP 590


>gi|126644825|ref|XP_001388129.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium parvum
           Iowa II]
 gi|126117357|gb|EAZ51457.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
           parvum Iowa II]
 gi|323509235|dbj|BAJ77510.1| cgd3_3920 [Cryptosporidium parvum]
          Length = 519

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 10/415 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI   + +AL E G   +T +Q   +   L  KDVL +A+TGSGKT+AF +  A+ 
Sbjct: 28  FESSNICDQLKKALKEMGMETMTEIQAKAIPRILNGKDVLGAAKTGSGKTLAFLIPAANL 87

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N  F P +    + I+PTREL++Q+      L         + +GG +   E   L
Sbjct: 88  LY--NVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVMGGANRRTEAEKL 145

Query: 122 QNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G +I+V TPGRL DH    K     +L  +V+DEAD +L++GF +++  I+   PK+R
Sbjct: 146 SKGVNILVATPGRLLDHLQNTKQFLFKNLLNLVIDEADRILEIGFEEEMNQIIKLLPKER 205

Query: 181 RMLMFSATISPAITTLAK--NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +  +FSAT +  +  L +        V     S     S ++   V+   + R   +   
Sbjct: 206 QTSLFSATQTTKVADLVRLSLKNPVLVESKNTSSIATVSGLEQGYVIAQANQRFLLLYTF 265

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ +  K  +VF S+  S     ++         ++ G+  Q  R             + 
Sbjct: 266 LKKNRDKKVMVFFSSCMSTKFHEELFNYVDLTCSSIHGKKKQTSRMQTYYDFCSADKGLL 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAE 357
           + TDVAARG+D+P+++ ++  +   +P   +HR GRT R AG  G ++  +        +
Sbjct: 326 LCTDVAARGLDIPNVDWIVQYDPPDDPREYIHRVGRTARGAGGTGKALLFLLPEEIAFLQ 385

Query: 358 RLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            L ++ N+ +        + A  +   +R+++    L     D  +      A H
Sbjct: 386 YL-KKMNIPLNEYVFGKNKVANVQNQLERLIEKNYHLHCSARDAYRAYLHSYASH 439


>gi|213023601|ref|ZP_03338048.1| ATP-dependent RNA helicase SrmB [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 359

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/357 (31%), Positives = 177/357 (49%), Gaps = 6/357 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+   A  +IVF   R  V    + L         L GE++Q +R+  ++ + DGR  
Sbjct: 241 HLLKQDDATRSIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           V +ATDVAARGID+PD+  VI+ ++  + +  LHR GRTGRAGRKG ++ ++  +  
Sbjct: 301 VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDH 357


>gi|172062287|ref|YP_001809938.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171994804|gb|ACB65722.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------TRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E   +S I  R   VA ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVE 376
           +     V W P   ++
Sbjct: 362 QALKREVEWHPLAELK 377



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G + + IG I V    T+V   
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLGGE 539
             V+ D +  L       K ++++ +  E
Sbjct: 437 RGVARDALRKLNAGKIKGKRVKVRLMDEE 465


>gi|115359843|ref|YP_776981.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
 gi|115285131|gb|ABI90647.1| ATP-dependent RNA helicase DbpA [Burkholderia ambifaria AMMD]
          Length = 465

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------TRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E   +S I  R   VA ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVE 376
           +     V W P   ++
Sbjct: 362 QALKREVEWHPLAELK 377



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G + + IG I V    T+V   
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLGGE 539
             V+ D +  L       K ++++ +  E
Sbjct: 437 RGVAHDALRKLNAGKIKGKRVKVRLMDEE 465


>gi|323187577|gb|EFZ72886.1| ATP-independent RNA helicase dbpA [Escherichia coli RN587/1]
          Length = 457

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 196/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVRAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
           L   +               L + PTRELA QV  EL  L        +    GG     
Sbjct: 61  LLQQIDVS------LFQTQGLVLCPTRELADQVAGELRRLARFLLNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I    A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLKAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLK 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|304367670|gb|ADM26640.1| vasa-like protein [Branchiostoma floridae]
          Length = 785

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 195/373 (52%), Gaps = 13/373 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           +     +++  Y   T VQ+  +   L  +D++  AQTGSGKT AF L + + ++ E   
Sbjct: 344 ETFRANVAKAKYDRPTPVQKYSIPIVLGGRDLMACAQTGSGKTAAFLLPVLTGMMKEGLA 403

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              FS    P A+ +APTRELA+Q+  E       T +   +  GGVSV   +  +Q G 
Sbjct: 404 GSSFSNIQEPQAICVAPTRELAIQIFSEARKFSYGTMLRPCIAYGGVSVMHHKSQIQRGC 463

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF------ILDSSPKK 179
           H++V TPGRL D I    ++I  LK ++LDEAD MLD+GF  +I            +  +
Sbjct: 464 HLLVATPGRLLDFIDKGVISIKKLKYLILDEADRMLDMGFEPEIRRLVETASWGMPAKGE 523

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSAT    I  LA+++ +D + + I      ++D++   +  +  D+   + +IL
Sbjct: 524 RQTLMFSATFPEEIQKLAQDFLEDYIFLTIGRVGGANTDVEQTVMESSQYDKREKLTDIL 583

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G +  +VF  T+ +       L++  F   ++ G+  Q+ER  AL   R GRA V +
Sbjct: 584 GNLGQERVLVFVETKRNADFLASYLSQSGFPTTSIHGDRLQKEREEALMDFRTGRAPVLV 643

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----MQRR 355
           AT VAARG+D+P + +V++ +L S+ +  +HR GRTGR G  G ++     +    + R 
Sbjct: 644 ATSVAARGLDIPKVMVVVNYDLPSSIDEYVHRIGRTGRVGNTGKAISFYDSDKDASLARS 703

Query: 356 AERLFREANVSVV 368
             ++  +A  +V 
Sbjct: 704 LVKVLADAQQNVP 716


>gi|297794203|ref|XP_002864986.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310821|gb|EFH41245.1| hypothetical protein ARALYDRAFT_496826 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 591

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/419 (26%), Positives = 203/419 (48%), Gaps = 14/419 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE++       +++ E G+  +T +Q   + P +  KDVL +A+TGSGKT+AF +  A
Sbjct: 113 ETFESLSLSDNTYKSVKEMGFARMTQIQAKAIPPLMMGKDVLGAARTGSGKTLAFLIPAA 172

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     RF+P +    + I PTRELA+Q     + L       V   IGG +  +E  
Sbjct: 173 ELLYHV--RFTPRNGTGVIVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGENRKKEAE 230

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +++V TPGRL DH+         +LK  V+DEAD +L+  F +D++ I+   PK
Sbjct: 231 ILAKGVNLLVATPGRLLDHLENTNGFVFKNLKLFVMDEADRILEQNFEEDLKKIIKLLPK 290

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
            R+  +FSAT S  +  LA+      V +++    ++ ++   +    +V    R   ++
Sbjct: 291 TRQTSLFSATQSAKVEDLARVSLASPVYIDVDEGRQKVTNEGLEQGYCVVPSGMRLLFLL 350

Query: 237 NILRYHGAKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             L+    K  I+ F ST  S     ++        + + G + Q +R++ L   +    
Sbjct: 351 TFLKRFHGKKKIMVFFSTCKSTKFHAELFRYIKLDCLEIRGGIDQSKRTSTLFQFKKAET 410

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQR 354
            + + T+VAARG+D P ++ ++  +   NP   +HR GRT R  G KG ++ V+  +  +
Sbjct: 411 GILLCTNVAARGLDFPHVDWIVQYDPPDNPTEYIHRVGRTARGEGAKGKALLVLTPDELQ 470

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHD 412
             + L + A + V        + +   D +  L+D +  + +++   K+     ++ +D
Sbjct: 471 FIQYL-KAAKIPVEEHEFEEGKLL---DVKSFLEDLISKNYALKESAKEAYKTYISGYD 525


>gi|169852452|ref|XP_001832910.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
 gi|116506045|gb|EAU88940.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130]
          Length = 640

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 213/468 (45%), Gaps = 14/468 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +    AL + G+  +TS+Q   +   L  KDVL +A+TGSGKT+AF +     L   
Sbjct: 111 DLSEPTLRALKDMGFETMTSIQAKSIPVLLAGKDVLGAARTGSGKTLAFLIPAVELL--H 168

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    + + PTRELA+Q+    + L A       V IGG +   E   L  G 
Sbjct: 169 RLKFKPVNGTGIIILTPTRELALQIFGVAKDLMAYHSQTFGVVIGGANPKAEVDKLSKGV 228

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +++V TPGRL DH++        +L+A+V+DEAD +L++GF ++++ I+   P + R  M
Sbjct: 229 NLLVATPGRLLDHLQNAKGFVYRNLRALVIDEADRILEIGFEEEMKRIISILPNENRQSM 288

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       V V+        S +    V+ +   R   +   L+
Sbjct: 289 LFSATQTTKVTDLARISLRPGPVHVDVDKEEATSTVSTLSQGYVVCSSDMRFRLLYTFLK 348

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV    ++L      V+ L G+  Q +R+N      +  + + + 
Sbjct: 349 KNLKKKVIVFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQMKRTNTFFEFINAESGILLC 408

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++ ++  +   +P + +HR GRT RAG+ G S+  + ++      R  
Sbjct: 409 TDVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVGKSLLFLLESELGFL-RYL 467

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-- 417
           ++A V +     P+   A  +   +++LQ   FL     D  +      A +  +KI   
Sbjct: 468 KDAKVPLNEYSFPAERIANIQTQLEKLLQKNYFLHKSAKDGFRSYLQSYASYSLKKIYDV 527

Query: 418 --AGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                 ++ ++ G   P  +  V    G    +   R     G   ++
Sbjct: 528 NKLDLAKVGKSFGFATPPRVNLVVGPGGGKGNQAKKRKRNEDGSESED 575


>gi|227503665|ref|ZP_03933714.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
 gi|227075701|gb|EEI13664.1| possible ATP-dependent RNA helicase [Corynebacterium accolens ATCC
           49725]
          Length = 435

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 174/371 (46%), Gaps = 5/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  PQ +   L+++G      +Q A +   L  KDVL    TGSGKT  FGL  
Sbjct: 1   MTTFAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P A+ +APTRELA Q+ + L+      G+ V   +GGV+++   
Sbjct: 61  LARL--AGSGASTPGHPRAVVLAPTRELATQIQQRLDEPATALGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L+   ++   LDEAD+M D+GF   +  +L+ +P 
Sbjct: 119 RSLARPVDLLVATPGRAQDLIAQGRLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPP 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + +  D V  + A        + +    V      N +V  
Sbjct: 179 TGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L         L G+  Q  R+ A+    D    V 
Sbjct: 239 IAARAGK-TIMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADRSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +     
Sbjct: 298 VATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAA 357

Query: 359 LFREANVSVVW 369
           L ++A V+   
Sbjct: 358 LIKKAGVNATE 368


>gi|254515296|ref|ZP_05127357.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
 gi|219677539|gb|EED33904.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR5-3]
          Length = 428

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/373 (31%), Positives = 181/373 (48%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   ++E G+   + +Q  +L   L+  D +  AQTG+GKT AF + +   LL  
Sbjct: 51  DLHPTLMHGIAEIGFEYCSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFDDLLRN 110

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL +Q+  +   L   TG     +  G     +  +  + 
Sbjct: 111 PHEGERFLGEPRALVIAPTRELVMQIAADAADLGKYTGLNTCTLIGGMDYQKQLNQLGRE 170

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL D    + L +  ++ +VLDEAD MLD+GF   ++ I+  +P K    
Sbjct: 171 VVDLVVATPGRLIDFTGRRDLVLDQVEVLVLDEADRMLDMGFIPQVKRIVRQTPHKDYRQ 230

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  I  L++ +  DAV V I  ++     +D R  L +  +R   +VN+LR 
Sbjct: 231 TLLFSATFTQDIINLSEQWTTDAVTVEIEPDHVATDSVDQRIYLASSEERFRILVNLLRS 290

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A + IVF + R  V R  + L +       LSGE++Q +R+  L   + G   V +AT
Sbjct: 291 DDATSVIVFANRRDQVRRLYERLRKASITCGMLSGEIAQAKRTKTLDQFKKGEISVLVAT 350

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G S+    ++       L  
Sbjct: 351 DVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGTSISFASEDDAFLLPDLEA 410

Query: 362 EANVSVVWEPAPS 374
                V  E  P 
Sbjct: 411 LLGAPVRCEHPPE 423


>gi|194222171|ref|XP_001916624.1| PREDICTED: similar to DEAD box polypeptide 18 (predicted) [Equus
           caballus]
          Length = 623

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 130 TSFASLTSLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 189

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 190 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHIHTYGLIMGGSNRSAE 247

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 248 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 307

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 308 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 367

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 368 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 427

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 428 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 486

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 487 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 544

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 545 SHSLKQI 551


>gi|110834781|ref|YP_693640.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
 gi|110647892|emb|CAL17368.1| ATP-dependent RNA helicase RhlB [Alcanivorax borkumensis SK2]
          Length = 422

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 195/389 (50%), Gaps = 5/389 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   +++ G+   T +Q  +L   L   D +  AQTG+GKT AF + + + LL  
Sbjct: 29  DLHLDLMHGIADSGFQYCTPIQAEVLEHTLAGADAIGRAQTGTGKTAAFLITVINDLLKH 88

Query: 66  NDRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                  A  P AL +APTRELA+Q+ ++   L   T   V++V  G     ++ R    
Sbjct: 89  PIDVQRFAGEPRALIVAPTRELAMQIEKDANILTKYTDLQVMSVVGGMNFNRQQERLQNK 148

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRR 181
              I+V TPGRL D  + + L +  ++ +VLDEAD MLD+GF  D++ I+  +P  + R+
Sbjct: 149 LIDILVATPGRLLDFAKRRDLWLDRVEFLVLDEADRMLDMGFIPDVKRIVGMTPKSQYRQ 208

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             +FSAT +  +  L++ + +DA  V I         ++ +  +    D+   + N++  
Sbjct: 209 TQLFSATFNDDVMNLSRRWTQDAEIVEIEPTQVTTDTVEQKVYITNTDDKFKLLYNLITG 268

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF + R    R    L +   +V  +SG++ Q +RS  L+  R G  +V IAT
Sbjct: 269 MNMDKVIVFANRRDITRRVCDRLQKRGLKVSLISGDVPQTQRSKTLERFRAGDLQVLIAT 328

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  GMS+    ++       L  
Sbjct: 329 DVAGRGIHIDGVSHVVNYNLPEDPEDYVHRIGRTGRAGASGMSISFACEDDAFLLPELEN 388

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDP 390
              + +  E  P+ + + ER+     + P
Sbjct: 389 AIGMKLECEYPPA-DLLAERERSASAKAP 416


>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
 gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
          Length = 389

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 181/372 (48%), Gaps = 9/372 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  P  +   EAL+ +G    T +Q+ ++   L  ++++V +QTG+GKT+A+ L +
Sbjct: 1   MNQFQQWPIGEPFLEALTNQGITEPTEIQQQVIPEALDGQNLIVHSQTGTGKTLAYLLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRE 117
            +      ++        AL +APT+ELA+Q+    + L A T + V  +  G     + 
Sbjct: 61  LTKTEELPEQ------TQALILAPTQELAMQIVEVAKQLTATTSITVLPLIGGANIKRQV 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +  +   H+ VGTPGR+ + +  K L + H+K +V+DEAD M++     +    +    
Sbjct: 115 EKLKKKKPHVAVGTPGRILELMEMKKLKVPHVKMIVVDEADRMMEETSAWNAFENVAKRI 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 +F +    +  T         +    A  N     +++  +     +R + +  
Sbjct: 175 GNEAQYLFVSATFASRFTELVAPYVPFIETVSAQGNTVQQAVNHWFIRCEKRERMDVVRK 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++ +   +  IVF +    V+  T  L     + VALS + ++QER  AL  ++   A+V
Sbjct: 235 LIHHENIQRGIVFVNRLEHVAETTAKLQFKGIKAVALSSDQTKQERERALHQLKTSEAQV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+DVAARG+D+ D+  VI  E  +  E  +HR+GRTGR G++G  + +  +    + E
Sbjct: 295 LIASDVAARGLDVDDVSHVIQLEPPTTSEAYVHRAGRTGRMGKEGTVITLTSEREMYKLE 354

Query: 358 RLFREANVSVVW 369
           ++ +  N+S   
Sbjct: 355 KIEKGLNLSFEE 366


>gi|326478704|gb|EGE02714.1| ATP-dependent RNA helicase DHH1 [Trichophyton equinum CBS 127.97]
          Length = 441

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 164/355 (46%), Gaps = 9/355 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 49  FEDFYIKRDLMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
               N + +      AL + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 109 ---TNPKIAK---TQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRL 162

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 163 NDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLTFHPKDRQ 222

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT    + T    + ++   +N+  E             V    + + +  +   
Sbjct: 223 VMLFSATFPIIVKTFKDKHMRNPYEINLMDELTLRGI-TQYYAFVEERQKVHCLNTLFSK 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +        + Q  R+      R+G  R  + +
Sbjct: 282 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCS 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +   
Sbjct: 342 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRYNL 396


>gi|306836062|ref|ZP_07469052.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
 gi|304568089|gb|EFM43664.1| ATP-dependent RNA helicase RhlE [Corynebacterium accolens ATCC
           49726]
          Length = 435

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 176/371 (47%), Gaps = 5/371 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  PQ +   L+++G      +Q A +   L  KDVL    TGSGKT  FGL  
Sbjct: 1   MTTFAELGLPQRVVHVLNDQGITEAFPIQAAAIPDVLAGKDVLGRGPTGSGKTFTFGLPT 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P A+ +APTRELA Q+ + L+   A  G+ V   +GGV+++   
Sbjct: 61  LARL--AGSGASTPGHPRAVVLAPTRELATQIQQRLDEPAAALGLRVLAVVGGVNINHHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     ++V TPGR  D I    L+   ++   LDEAD+M D+GF   +  +L+ +P 
Sbjct: 119 RSLARPVDLLVATPGRAQDLIAQGKLSFDKVQITTLDEADQMADMGFLPQVRKLLNYTPP 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + +  D V  + A        + +    V      N +V  
Sbjct: 179 TGQRLLFSATLDGDVNKLVEQFLHDPVVHSTAPVTAAVESMSHHLFFVGDRPARNEVVMR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L         L G+  Q  R+ A+    DG   V 
Sbjct: 239 IAARAGK-TIMFMRTKHGVDRQVKKLRRVGINAYPLHGDKGQGARTRAISGFADGSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT R G  G  V ++    +     
Sbjct: 298 VATDIAARGIDIADVSLVVHVDPPAEHKAYLHRAGRTARGGATGTVVTLVTDEQRSEVAA 357

Query: 359 LFREANVSVVW 369
           L ++A V+   
Sbjct: 358 LIKKAGVNATE 368


>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
 gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
          Length = 447

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 186/385 (48%), Gaps = 10/385 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  ++   + +AL+++G    T++Q   +   +   DVL S+ TG+GKT+AF L  
Sbjct: 3   ISNFDEFDLDPQLLKALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    R     AP  L + PTRELA+QV  + + L   T + +A   GGV+     
Sbjct: 63  IQHLLDFPRR--KPGAPRVLVLTPTRELAMQVAEQAQQLAQFTSLSIATITGGVAYQNHG 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +V+ TPGRL  +I+ +  +   ++ ++ DEAD ML +GF  D E I   +  
Sbjct: 121 EIFNKNQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADRMLQMGFGQDAERIAAETRW 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIV 236
           +++ ++FSAT+             D      A  +R+      +      +   +   + 
Sbjct: 181 RKQTMLFSATLEGEELNSFAQRLLDNPVEVNAEPSRRERKKIQQWYYHADSKEHKIKLLA 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        IVF   R  V    ++L +   +   L GE++Q +R+NA++ +RDG   
Sbjct: 241 RVIVDEKVSKGIVFVRHREEVRELAEILRKRGIRSTYLEGEMAQTQRNNAIEKLRDGVVT 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +AT+VAARGID+ D+  V + +L  N +  LHR GRT RAG+KG ++  +  +     
Sbjct: 301 ILVATNVAARGIDIDDISHVFNFDLPYNADVYLHRIGRTARAGKKGCAISFVEAHDYPLL 360

Query: 357 ERLFREANV----SVVWEPAPSVEA 377
            ++ R         V+ + AP  +A
Sbjct: 361 GKICRYTGEILKARVIEDLAPRTKA 385


>gi|328875962|gb|EGG24326.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 806

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 111/369 (30%), Positives = 191/369 (51%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
              ++ +++ ++GY   TS+Q+  +   L  +D++  A+TGSGKT +F       ++ + 
Sbjct: 338 FDDIMIQSIQKQGYETPTSIQKQAVPIALSGRDLIAIAKTGSGKTASFIWPAIVHIMNQ- 396

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+A+ ++PTRELA Q+  E +       +   V  GGV+   + R+L+ G  
Sbjct: 397 PYLEKGDGPIAVFVSPTRELAHQIYMETQKFAKPYKIKTTVVYGGVTKLLQCRELKAGCE 456

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D I+ K   ++    +VLDEAD M D+GF   ++ I+      R+ L+FS
Sbjct: 457 ILVGTPGRIIDMIKLKATKMNRCTFLVLDEADRMFDMGFEPQVQSIIGQIRPDRQTLLFS 516

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI--LRYHGA 244
           AT   AI  LA+N   D +R++I +    + DI     ++         +          
Sbjct: 517 ATFPNAIEQLARNILTDPIRISIGNSGSANQDIKQFVKVLPSDGEKWGWLTETLPLMLTE 576

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            N ++F ST+ +V + +  L +  F    + G+  QQER+  +   + G   + +ATDVA
Sbjct: 577 GNVVIFVSTKVAVEQLSTNLLKFGFLADGIHGDKDQQERTQIISRFKSGTVPILVATDVA 636

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR--- 361
           ARG+D+  ++ V++ ++S + ++  HR GRTGRAG +G +  +I       +  L R   
Sbjct: 637 ARGLDISLIKNVVNFDVSRDIDSHTHRVGRTGRAGTQGTAHTLITPKDTHFSADLVRHLE 696

Query: 362 EANVSVVWE 370
           EAN +V  E
Sbjct: 697 EANQNVPPE 705


>gi|163839948|ref|YP_001624353.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953424|gb|ABY22939.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 565

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 141/478 (29%), Positives = 222/478 (46%), Gaps = 17/478 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I EAL++ G V+   +Q   L   L   D++  A+TG+GKT+ FG+ +   + A 
Sbjct: 42  NVRADIVEALADAGIVHPFPIQSMTLPVALGGHDIIGQAKTGTGKTLGFGVPVLQRVTAP 101

Query: 66  NDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            D          AP AL + PTRELAVQV  +L+    K G  +    GG +   +   L
Sbjct: 102 KDEGYDALPVPGAPQALIVVPTRELAVQVANDLQTAARKRGARITTIYGGRAFEPQIESL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGRL D  + + LN+ +++ VVLDEADEMLDLGF  D+E ++ ++P  R+
Sbjct: 162 TKGVEVVVGTPGRLIDLFKQRHLNLKNVRMVVLDEADEMLDLGFLPDVETLMAATPAVRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+   I  +A+ Y      +  A  +       DI          D+   +  I
Sbjct: 222 TMLFSATMPGPIVAMARRYMTQPTHIRAADPDDEGLTKRDIRQLVYRAHSMDKIEVVARI 281

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    I+F  T+ + ++  + LAE  F   A+ G+L Q  R  AL+  R+ +  V 
Sbjct: 282 LQARGRGRTIIFTKTKRTAAKVAEELAERGFASAAIHGDLGQGAREQALRAFRNNKVDVL 341

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG KG +V  +  +       
Sbjct: 342 VATDVAARGIDVDDVTHVINYQCVEDEKIYLHRVGRTGRAGNKGTAVTFVDWDDMPGWGL 401

Query: 359 LFREANVSVVWEPAPSVE---------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + +   +    EP  +            I E    R+ +       +  +  + +     
Sbjct: 402 INKTLGLPFD-EPVETYSSSPHLYSDLDIPEGTKGRLPKSQRTHAGLNAEVLEDLGETGK 460

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           +H  +   +G    +R G               R      +R+    G + DN   S+
Sbjct: 461 RHGGQSTGSGRGNDNRNGAGGNRGGQSRDGQRRRSNDERPARSRNSNGPAADNAADST 518


>gi|161521775|ref|YP_001585202.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|189352063|ref|YP_001947690.1| ATP-dependent RNA helicase DbpA [Burkholderia multivorans ATCC
           17616]
 gi|221210620|ref|ZP_03583600.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
 gi|160345825|gb|ABX18910.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
           ATCC 17616]
 gi|189336085|dbj|BAG45154.1| ATP-independent RNA helicase [Burkholderia multivorans ATCC 17616]
 gi|221169576|gb|EEE02043.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD1]
          Length = 464

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 195/372 (52%), Gaps = 10/372 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L + GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S 
Sbjct: 9   FSTLPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +   + +     E    S I  R   V  ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRSPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPA 372
           +     V W P 
Sbjct: 362 QAQKRDVEWRPL 373



 Score = 57.3 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF--KGSSWFSLSVGSKQKAEARWL 484
            L + +E+  V  +    +   + R       + D           +  G K K     +
Sbjct: 347 SLASMDEMGRVGAIEQAQKRDVEWRPLSELTPASDAPLLPPMETLQILGGRKDKIRPGDV 406

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKYLG 537
           +  L   +G + + IG I V    T+V     ++ D +  L       K ++++ + 
Sbjct: 407 LGALTGDAGFDGKQIGKINVTEFSTYVAVERGIAHDALRKLNAGKIKGKRVKVRLMD 463


>gi|268573013|ref|XP_002641484.1| Hypothetical protein CBG09775 [Caenorhabditis briggsae]
          Length = 814

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 172/373 (46%), Gaps = 3/373 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  +++ EA+ +  Y   T +Q   +   L  +DVL  A+TGSGKT A+          +
Sbjct: 269 SFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH-TMD 327

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
                    P+A+ + PTRELA+QV +E +         V+    GG    +       G
Sbjct: 328 QPDLKEGEGPVAVIVVPTRELAIQVYQEAKRFCKVYNINVICAYGGGSKWEQSNELQNEG 387

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGR+ D ++ +  N      +V DEAD M D+GF   ++ I D     R+ LM
Sbjct: 388 AEMVVCTPGRIIDLVKMEATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDRQCLM 447

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHG 243
           FSAT    +  LA++   D VR+        ++DI+ +  ++   D + + ++  L    
Sbjct: 448 FSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVYVMQNQDVKFHWLIRNLVEFA 507

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +   ++   T+   S       +     + L      Q   N   +    ++++ +ATDV
Sbjct: 508 SLGKVLIFVTKKLDSEDLAKKLKLKDFDIVLLHGDMLQAERNENLLKFRKKSQILVATDV 567

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ ++  V++ +++ + +  +HR GRTGRAG +G +  ++ +        L +  
Sbjct: 568 AARGLDISEIRTVVNFDMARDIDTHVHRIGRTGRAGHRGTAYTLVTEKDIETVGHLVKNL 627

Query: 364 NVSVVWEPAPSVE 376
                  P P ++
Sbjct: 628 ESVSQEVPKPLMD 640


>gi|71019993|ref|XP_760227.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
 gi|74701057|sp|Q4P733|DED1_USTMA RecName: Full=ATP-dependent RNA helicase DED1
 gi|46099796|gb|EAK85029.1| hypothetical protein UM04080.1 [Ustilago maydis 521]
          Length = 672

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 114/391 (29%), Positives = 188/391 (48%), Gaps = 22/391 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +  I   + E +    Y N T VQ+  +      +D++  AQTGSGKT  F   +
Sbjct: 188 VTTFTSPPIDAHLLENIKLARYTNPTPVQKYSIPIIKLGRDLMGCAQTGSGKTGGFLFPI 247

Query: 59  ASTLLAENDRF------------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S L                      + P  L +APTREL  Q+  E      ++ V  A
Sbjct: 248 LSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTRELVSQIHDEARKFTYRSWVKPA 307

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  +  + R ++ G  ++  TPGRL D +    +++S+++ +VLDEAD MLD+GF 
Sbjct: 308 VVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRISLSNVRFLVLDEADRMLDMGFE 367

Query: 167 DDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I           R+ LMFSAT    I  LAK++ K+ V +++        +I  +
Sbjct: 368 PQIRRIVEGEDMPGVMDRQTLMFSATFPRDIQLLAKDFLKEYVFLSVGRVGSTSENITQK 427

Query: 223 AVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              V   D+ + ++++L         ++F  T+      +  L        ++ G+ +Q+
Sbjct: 428 IEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQR 487

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL++ R G+  + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  
Sbjct: 488 ERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNV 547

Query: 342 GMSVFVI---PQNMQRRAERLFREANVSVVW 369
           G +        +N+ R    L +EAN  V  
Sbjct: 548 GHATAFFNRGNKNIVRDLIELLKEANQEVPQ 578


>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 772

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 219/470 (46%), Gaps = 25/470 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 253 SLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKTGAFVVPILERLLYR 312

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +     + + PTRELA+Q       L A T +   + +GG+S+  +  +L+   
Sbjct: 313 PKKVPTSR---VVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKAQEVELRLRP 369

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R     N+  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 370 DVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 429

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHS----DIDYRAVLVALSDRDNAIVNILR 240
           FSAT++ ++  L +       RV + S+  +          R        R   +V+I +
Sbjct: 430 FSATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGREEKRMGYLVHICK 489

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  IVF   +    R   +          L G ++Q +R  +++  RDG+    +A
Sbjct: 490 TMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRDGKVNYLLA 549

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RG+D+  ++ VI+ E   N E  +HR GRT RAGR G+++ +  +  ++      
Sbjct: 550 TDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRK------ 603

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDPEKIA 417
                 VV     + +A   +   RI++      +   +   E ++ ++++ +   ++ A
Sbjct: 604 ------VVKAAVKAGKAQGAKIMSRIIEPAEADKWQAQVDEMEDEIEEIMVEEKQEKQFA 657

Query: 418 AGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              +++ +    L    EI      +  +  +D  +A + G    +  KG
Sbjct: 658 QAEMQVRKGENILQHEAEIKARPKRTWFETEQDKKKAKEAGREELNGPKG 707


>gi|1054723|emb|CAA31405.1| vasa [Drosophila melanogaster]
          Length = 661

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 177/369 (47%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ G+   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 251 DLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 311 PHELELGR-PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-- 183
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+     +      
Sbjct: 370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  +A  + K+ V V I       SD+      V    +  + +  +    
Sbjct: 430 MFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYAK-RSKLIEILSEQ 488

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           A   IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT V
Sbjct: 489 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV 548

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERL 359
           A+RG+D+ +++ VI+ ++ S  ++ +HR GRTG  G  G +         R       ++
Sbjct: 549 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAIAADLVKI 608

Query: 360 FREANVSVV 368
              +  +V 
Sbjct: 609 LEGSGQTVP 617


>gi|127512383|ref|YP_001093580.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126637678|gb|ABO23321.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 441

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 191/392 (48%), Gaps = 10/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   GY   T +Q   +   L  +D+L  A+TGSGKT AF L L   L+  
Sbjct: 30  NLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQKLV-- 87

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDLQN 123
             R    +   AL + PTRELA QV        A+      V      VSV+ +   L+ 
Sbjct: 88  GQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLALRG 147

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA I+V TPGRL D +    + +S LKA+VLDEAD ML+LGF +++  IL   P +++ L
Sbjct: 148 GADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQKQTL 207

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    + +L      D V + +          + R   V  S++   +  +++   
Sbjct: 208 LFSATFPEEVLSLTAKLLTDPVEIQMQEAQSADI--EQRVYTVNRSNKTALLAELIKVRQ 265

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  +VF S + S     + L +         G+ +Q  RS  L   ++G   V IATD+
Sbjct: 266 WRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVLIATDI 325

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +VI+ EL  +P + LHR GR+GRAG  G ++ +I  +     + + ++ 
Sbjct: 326 AARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFKVIEKKN 385

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            + +  E  P  EA    DA+  L  P   D 
Sbjct: 386 KLRLPREQYPGFEA----DAEAPLDCPSRQDK 413


>gi|325521922|gb|EGD00628.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. TJI49]
          Length = 464

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 206/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S 
Sbjct: 9   FSALPLTPAALANLAQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V  ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++   +    + L  P+    I G  K  + 
Sbjct: 362 QAQKRDVEWHPLAELKPASD----QTLLPPMETLQILGGRKDKIR 402



 Score = 56.9 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K K     ++  L   +G + + IG I V    T+V V         R
Sbjct: 386 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAVERGIAQDALR 445

Query: 524 TVKLD--KGIQLKY 535
            +     KG ++K 
Sbjct: 446 KLNAGKIKGKRVKV 459


>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
 gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
          Length = 766

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/378 (31%), Positives = 187/378 (49%), Gaps = 9/378 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++   P  +  A++++ Y   T++Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 218 IKNFQDCGFPVPLMNAIAKQAYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 277

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ +         P+ +  APTRELA Q+  E +       + VA   GGVS   + 
Sbjct: 278 IVHIM-DQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQF 336

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  +V+ TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 337 KELKAGCEVVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 396

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-- 236
            R+ L+FSAT+   +  LA+    D +RV +      + DI     ++         +  
Sbjct: 397 DRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLE 456

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +       + +VF S +A V    K L +  F++ AL G+  Q  R   LQ  + G   
Sbjct: 457 KLPGMIDDGDVLVFASKKARVDEIEKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYH 516

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ +++   +  +HR GRTGRAG + G +  +I Q   R 
Sbjct: 517 VLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARF 576

Query: 356 AERL---FREANVSVVWE 370
           A  L      A   V  E
Sbjct: 577 AGELVHSLIAAGQDVPNE 594


>gi|297562761|ref|YP_003681735.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847209|gb|ADH69229.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 516

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 130/415 (31%), Positives = 197/415 (47%), Gaps = 11/415 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL   G +    +QE  L   L   D++  A+TG+GKT+AFGL L     A+ 
Sbjct: 1   MSTELADALEAEGIIEPFLIQELALPIALGGSDIIGQARTGTGKTLAFGLPLLQR--AQK 58

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +P   P AL + PTRELA+QV  +L     ++G  +    GG S   +   L+ G  
Sbjct: 59  DPGTPKR-PRALVVVPTRELAIQVAADLTTASKRSGTRILTVYGGRSYEPQVNGLKEGTD 117

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VVGTPGRL D  + K L +  + AVVLDEAD+MLDLGF  DIE IL  +P  R+ ++FS
Sbjct: 118 VVVGTPGRLLDLEKQKHLRLDGVSAVVLDEADKMLDLGFLPDIERILTRTPDDRQTMLFS 177

Query: 187 ATISPA-----ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           AT+           L +     A   +    +     I   A      D+   +  +L+ 
Sbjct: 178 ATMPSEIVSLSRKYLRRPTHVRASDDDEIDGSAITGQITQHAFRTHQMDKIEMLARLLQA 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                ++VFC T+ +  R    L    F V A+ G+L Q +R  AL+  R+G+  + +AT
Sbjct: 238 SDHGQSMVFCQTKRACDRVAGDLEARGFAVAAVHGDLGQSQRERALRAFRNGKINILVAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+ D+  V++ E   + +   HR GRTGRAGR G +V  +      R + +  
Sbjct: 298 DVAARGLDVDDVTHVVNYETPEDEKTYTHRIGRTGRAGRSGTAVTFVDWQEMPRWKLING 357

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +       P             L+ P        ++++     L   + E I
Sbjct: 358 ALGLPFHE---PEETYSTSPHFFEALRIPAGTKGKLAEDRRDDHAGLEAEEIEDI 409


>gi|154286470|ref|XP_001544030.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
 gi|150407671|gb|EDN03212.1| hypothetical protein HCAG_01076 [Ajellomyces capsulatus NAm1]
          Length = 721

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 185/398 (46%), Gaps = 10/398 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++P  +   + LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  FEAFSDLPLSEPTADGLSACHFKSLTDIQARAIPHALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG  +  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK
Sbjct: 166 ERLGKMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   V++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       IVF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 YSCLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDP 390
              +   +  + +      S +   I+ +      +DP
Sbjct: 406 GMLKRLEQKKIPIEKINVRSKKQQSIKNQLQNMCFKDP 443


>gi|227827050|ref|YP_002828829.1| DEAD/DEAH box helicase [Sulfolobus islandicus M.14.25]
 gi|229584218|ref|YP_002842719.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
 gi|227458845|gb|ACP37531.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.14.25]
 gi|228019267|gb|ACP54674.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           M.16.27]
          Length = 360

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +   
Sbjct: 17  NMFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                          AL ++PTRELA Q+  E++ L     + V++      +     D 
Sbjct: 77  NST------------ALILSPTRELATQILDEIKKLGKYKQIDVSLI-----IGGISYDD 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q  + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K  
Sbjct: 120 QRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               +      +T   +  +     V    +  +     +  V    +D+ + ++     
Sbjct: 180 GFFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLL---EE 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 237 IDGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++           +R+
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRI 354


>gi|261345270|ref|ZP_05972914.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
 gi|282566969|gb|EFB72504.1| ATP-dependent RNA helicase RhlB [Providencia rustigianii DSM 4541]
          Length = 428

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 187/382 (48%), Gaps = 3/382 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL+++G+   T +Q A L   +  KDV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPKVIEALNKKGFNFCTPIQAATLPFTVEGKDVAGQAQTGTGKTLAFLTSTFHFLLTHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + + L   TG+ + +  GG     + + LQNG 
Sbjct: 76  AMDGKKTNQPRALIMAPTRELAVQIYSDSKELAEYTGLKMGLAYGGDGYDEQLKVLQNGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I+VGT GRL D+ +   ++++ ++ VVLDEAD M DLGF  DI +I    P     L  
Sbjct: 136 DILVGTTGRLIDYAKQGHVDLTAIQVVVLDEADRMYDLGFIKDIRWIFRRMPSAADRLNL 195

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT+S  +  LA     +   + +    +    I       +  ++   +  +L    
Sbjct: 196 LFSATLSYRVRELAFEQMNNPEYIEVEPLQKTGHRIKEELFYPSNEEKMRLLQTLLEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +T+         LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PERCIIFANTKHRCDDIWAHLAADGHRVGLLTGDVAQKKRLRILEQFTQGHIDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGNSISLACEEYSLNLPAIEEYI 375

Query: 364 NVSVVWEPAPSVEAIRERDAQR 385
             S+      S   + E  A +
Sbjct: 376 QHSIPVSKYNSEALLSELPAPK 397


>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
          Length = 512

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 191/387 (49%), Gaps = 11/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +P  + +     G+   + +Q       L  +D +  A TGSGKT+AFG+     +  + 
Sbjct: 101 LPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKM 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++ +    P  L ++PTRELA Q+   L    A  G+      GG S   +   L++G 
Sbjct: 159 GEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+M+MF
Sbjct: 219 DIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQMVMF 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-----VNILR 240
           SAT  PA+  LA+ +        +       ++ D   ++  L DR         ++   
Sbjct: 279 SATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYH 338

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF   +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IA
Sbjct: 339 KAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  +  A  L 
Sbjct: 399 TDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELV 458

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQ 384
              REA   V          ++++++Q
Sbjct: 459 NVLREAGQVVPPALTKFGTHVKKKESQ 485


>gi|194043658|ref|XP_001927639.1| PREDICTED: ATP-dependent RNA helicase DDX18-like [Sus scrofa]
          Length = 669

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/427 (26%), Positives = 211/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++      A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 176 TSFASLTDLVNENTLRAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 235

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 236 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 293

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +IVV TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 294 AQKLANGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 353

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 354 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 413

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       + 
Sbjct: 414 LLFTFLKKNRKKKLMVFFSSCKSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNA 473

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 474 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 532

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 533 ELGFL-RYLKQSKVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 590

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 591 SHSLKQI 597


>gi|134299705|ref|YP_001113201.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052405|gb|ABO50376.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 438

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 193/374 (51%), Gaps = 11/374 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ +     I E LS++G  N T++Q+  +   L+ KD++  +QTGSGKT+A+ L +
Sbjct: 2   VTSFDKLEIDADIAEGLSKQGIKNPTAIQKVAIPLALKNKDIIGQSQTGSGKTLAYLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHR 116
              +       S      AL +APT EL +Q+ ++++ L +  G+ +   V IG V++ R
Sbjct: 62  FQKID------SSKRETQALILAPTHELVMQIDKQIKTLSSNAGLTINSTVMIGEVNIVR 115

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+   HI+VG+ GR+ + I+ K ++   +K +V+DEAD +LD      ++ ++ ++
Sbjct: 116 QIEKLKEKPHIIVGSTGRVLELIKRKKISSHTIKTIVIDEADMLLDQNNLAGVKDVIKTT 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            + R++++FSA ++      +K   KDA  + I  E   + +I +  ++    D+   + 
Sbjct: 176 MRDRQLMIFSAYMNQRAMAESKELTKDAEVIIIEDEILVNPNITHLYLIAEQRDKMKVLR 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     K AI+F + +    + T +  ++    V+     + +E             +
Sbjct: 236 KLIAATKPKKAIIFVN-KMEDIQTTALKLQYHNFKVSEIYGKAAKEERQKAMEGFRSEGQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+D+AARG+D+  +  + + +L  + +  LHR GRTGR G+ G ++ ++ +      
Sbjct: 295 LLVASDMAARGLDINGVTHIFNLDLPEDSKEYLHRVGRTGRKGKLGTAISIVTERETALL 354

Query: 357 ERLFREANVSVVWE 370
           ++  RE  + +  +
Sbjct: 355 KKYEREFKIIIEEK 368


>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 627

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 189/371 (50%), Gaps = 11/371 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + IF    +   +   L    Y+  T VQ+  +   L  +D++  AQTGSGKT  F    
Sbjct: 149 ITIFTEVELGPEVCRNLELCKYMKPTPVQKYSIPIGLAGRDMMACAQTGSGKTGGFLFPT 208

Query: 59  ASTLLAENDRF-------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + +L E  +           S P AL +APTRELA Q+  E +     TGV   V  GG
Sbjct: 209 LAAMLREGAKPVDGAGSSQRKSHPAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGG 268

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             V R+ R+L+ G  ++V TPGRL D +    +++S ++ ++LDEAD MLD+GF   I  
Sbjct: 269 AEVGRQVRELERGCDLLVATPGRLVDLMERGRVSLSGIRFLILDEADRMLDMGFEPQIRR 328

Query: 172 --ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
               +  P++R+  MFSAT    +  LA ++ +D + + +        D+  +   +   
Sbjct: 329 LVEQEDMPRERQTFMFSATFPREMQRLAADFLQDYIFLTVGRVGSASKDVKQQIEFIEPH 388

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           D+++ +V  L        +VF  T+       ++L    F   ++ G+ +Q+ER  AL  
Sbjct: 389 DKEDYLVRFLNQVQEGLILVFVETKRGADYLEQLLCREGFPATSIHGDRTQREREAALNS 448

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R GR  V +ATDVAARG+D+  +  VI+ +L +N ++ +HR GRTGRAG  G ++ ++ 
Sbjct: 449 FRSGRTPVLVATDVAARGLDINGVTHVINFDLPNNIDDYVHRIGRTGRAGNLGHALSMMT 508

Query: 350 QNMQRRAERLF 360
              +  +  L+
Sbjct: 509 DKNRNISRELY 519


>gi|323359563|ref|YP_004225959.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275934|dbj|BAJ76079.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 482

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   Q I +AL+ +G V+   +QE  +   L  +D++  A+TG+GKT  FG+ +
Sbjct: 1   MTTFAELGVDQDIVDALASKGIVDAFPIQEQTIPLGLPGQDIIGQAKTGTGKTFGFGIPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L       +P     AL + PTRELAVQV  +++ L +     V    GG +   + 
Sbjct: 61  VQRL-----GLNPEPGVKALIVVPTRELAVQVYEDMDMLTSNRPTSVVAIYGGKAYEGQI 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA IVVGTPGRL D    + L++S+   VVLDEAD+MLDLGF  DIE I    P 
Sbjct: 116 DQLKAGAQIVVGTPGRLIDLANQRLLDLSNATEVVLDEADKMLDLGFLADIEKIFSKVPP 175

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R   +FSAT+   I             +R N   E    ++I +        D+D  I 
Sbjct: 176 VRHTQLFSATMPGPIVALARRFMSNPIHMRANDPDEGLTQANIKHLVYRAHSLDKDEVIA 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G + A++F  T+ +  +    L +  F   A+ G++SQ+ R  ++   + G+  
Sbjct: 236 RILQSEGREKAVIFTRTKRAAQKLVDELGDRGFNAAAVHGDMSQEARERSMAAFKAGKKD 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG+ G++V  +  +   + 
Sbjct: 296 VLIATDVAARGIDVNDVTHVINHTIPDDEKTYLHRAGRTGRAGKTGIAVTFVDWDDLHKW 355

Query: 357 ERLFREANVSVVWEPAPS 374
             + R        +P P+
Sbjct: 356 ALINRALEFG---QPEPT 370


>gi|315084648|gb|EFT56624.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
          Length = 630

 Score =  179 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 156/590 (26%), Positives = 256/590 (43%), Gaps = 39/590 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 49  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 108

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 109 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 168

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGR 228

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 229 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 289 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 349 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 408

Query: 354 RRAERLFREANVSVVWEPAPS--------VEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            R + + +  N+ +  EP  +         +     DAQ  + DP      +   +K   
Sbjct: 409 TRWKLINKALNLELS-EPVETYSTSPHLYTDLDIPEDAQGQIIDPE-----KAATEKKRR 462

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                HD         R  R      ++     +     +    S    V          
Sbjct: 463 QHRHGHDGSHHEKATRRHSRDASKDGDKARRKRIRRRNGKVVRGSSPNPVAQPPHQKA-N 521

Query: 466 SSWFSLSVGSKQ------KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
            +  + +           +A  R       R++  NR S  A+ +  D  FV   A GV 
Sbjct: 522 QNRHAANSNHHDIVAGPREARPRHRR---ARNALHNRPSNMAVTITSDPQFVRADAHGVT 578

Query: 520 LLRRTVKLDKGIQLKYLGGEKP-------DFRGYKSSGFKSKNSQDGATK 562
               T+   +G+        +P       D   Y  +  + ++++    +
Sbjct: 579 ASPPTLNKMRGVSGSPEHHVQPNQSYWKVDDDPYNPAITRGQSARPQGHR 628


>gi|326504986|dbj|BAK02880.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 756

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 179/395 (45%), Gaps = 10/395 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P      +AL ++GY  ++ +Q A L   L  +DVL +A+TGSGKT+AF + +   
Sbjct: 68  FDELPLSTKTKDALRQQGYKEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVIEK 127

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  ++S       + ++PT +LA Q+   +  +           +    + +E+  +
Sbjct: 128 LYRE--KWSQEDGVGCIILSPTNDLAGQIWEVVRKVGKHHNFSGGAIVKRTGIEQEKERI 185

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   +V      +         + S+L+ +VLDEAD++LD  F+  ++ I+   PK R+
Sbjct: 186 NSLNILVCTPGRLVQHFDETPNFDCSNLQILVLDEADQILDQNFKSQVDIIISQIPKVRQ 245

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++           + + V+  +      +++  A++V L  + N + + +
Sbjct: 246 TLLFSATQTKSVKDLARVSLKNPEYISVHEQAITATPDNLEQCAMIVPLEQKLNMLWSFI 305

Query: 240 RYHGAKNAIVFCST-RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           + H     +VF S+ +     +           +       + E   A+         V 
Sbjct: 306 KRHLKSKILVFLSSVKQVKFVYEIFKKLRPGIPLKCMHGRMKYEVQQAIVAEFSESTSVL 365

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            +TD+ ARG+D+ +++ V+  +   +    +HR GRT R  +KG S+  +    +R  E+
Sbjct: 366 FSTDIFARGLDIGNVDWVVQVDCPESVALYIHRVGRTARYNKKGKSLIFLCPEEERMLEK 425

Query: 359 L---FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           L     +  ++V       +E I +  A  +++ P
Sbjct: 426 LKATESKIPINVRKPKVEQLEQISQNVAAVLVKFP 460


>gi|313807189|gb|EFS45682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313819383|gb|EFS57097.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313820647|gb|EFS58361.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313825517|gb|EFS63231.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|314924891|gb|EFS88722.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314978145|gb|EFT22239.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314986302|gb|EFT30394.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
 gi|315088606|gb|EFT60582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
          Length = 564

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKALNLELSE 428


>gi|296877050|ref|ZP_06901091.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
 gi|296431911|gb|EFH17717.1| ATP-dependent RNA helicase DbpA [Streptococcus parasanguinis ATCC
           15912]
          Length = 453

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 113/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N    I EAL E  +   T VQE ++   L   D++  ++TGSGKT  F L + 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
            TL  E+++        A+  AP+RELA Q+ +    + + +   + +           +
Sbjct: 67  QTLNEESEQVE------AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQ 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +      HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I    
Sbjct: 121 IEKLQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++ + L+FSATI   +    K Y  + V   I ++      ID   V     D++  I 
Sbjct: 181 PQQLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISETIDNWLVSTKGRDKNEQIY 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L     +V  + G++  +ER   +  +++    
Sbjct: 241 QLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +     
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++L++ +  D+   D +   +    K D E I
Sbjct: 361 RELEK---MGIRFVP-------------KVLKNGVIEDTYDRDRRANREKKQEKLDIEMI 404

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 405 GLVKKKKKKIKPGYKKKIKWAVDEKRRKAKRAENRARGRAERKAKR 450


>gi|191171034|ref|ZP_03032585.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
 gi|190908766|gb|EDV68354.1| ATP-independent RNA helicase DbpA [Escherichia coli F11]
          Length = 457

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 196/388 (50%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +          L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLSSAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      A  + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQAFVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I    A+
Sbjct: 354 NIISDMLQIKLNWQTLPANSSIVPLKAE 381



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLK 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|21356161|ref|NP_651970.1| Rs1 [Drosophila melanogaster]
 gi|7304081|gb|AAF59119.1| Rs1 [Drosophila melanogaster]
 gi|28626484|gb|AAO49161.1| LD15481p [Drosophila melanogaster]
          Length = 782

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/402 (27%), Positives = 201/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       ++V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  ++     P  E I +   +    +P   + +  ++ + 
Sbjct: 521 NAESTIKNRIIP-PEIIEKYRNKLTSLEPEIQNILDEEQAER 561


>gi|28571808|ref|NP_732694.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|28571809|ref|NP_524446.3| pitchoune, isoform A [Drosophila melanogaster]
 gi|33860195|sp|Q9VD51|DDX18_DROME RecName: Full=Probable ATP-dependent RNA helicase pitchoune
 gi|17945959|gb|AAL49024.1| RE48840p [Drosophila melanogaster]
 gi|21429110|gb|AAM50274.1| LD46167p [Drosophila melanogaster]
 gi|28381409|gb|AAF55951.2| pitchoune, isoform A [Drosophila melanogaster]
 gi|28381410|gb|AAN13900.2| pitchoune, isoform B [Drosophila melanogaster]
 gi|220946416|gb|ACL85751.1| pit-PA [synthetic construct]
 gi|220956056|gb|ACL90571.1| pit-PA [synthetic construct]
          Length = 680

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 251

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 252 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 311

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 312 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 371

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 372 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 431

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 432 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 491

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 492 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 550

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A V +         +  I +   ++++    FL+    +  K        H  ++I
Sbjct: 551 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQI 606


>gi|325686939|gb|EGD28963.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK72]
          Length = 447

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFVEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVCIGGVSVHR 116
             L  E D         A+  AP+RELA Q+ +    L + +     +     G     +
Sbjct: 61  QMLDEEADTV------QAVITAPSRELAAQIYQAARQLASFSEKEIRMANYIGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFIP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|67624257|ref|XP_668411.1| RNA-dependent helicase [Cryptosporidium hominis TU502]
 gi|54659606|gb|EAL38175.1| similar to RNA-dependent helicase p68 (DEAD-box protein p68)
           (DEAD-box protein 5) [Cryptosporidium hominis]
          Length = 406

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 10/358 (2%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
             T++Q       L   D++  A+TGSGKT+ F L     + A+         P+ L +A
Sbjct: 10  EPTAIQVQGWPVALSGHDMIGIAETGSGKTLGFLLPAMIHIRAQ-PLLRYGDGPICLVLA 68

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTREL  Q+  +     +   +      GGV    ++  ++NG  I +  PGRL D +  
Sbjct: 69  PTRELVEQIREQANQFGSIFKLRNTAIYGGVPKRPQQASIRNGVEICIACPGRLIDLLEE 128

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
              N+S +  +VLDEAD MLD+GF   I  ++      R+ L++SAT    +  LA++  
Sbjct: 129 GYTNLSRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLLWSATWPKEVQKLARDLC 188

Query: 202 KDAVRVNIA------SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
           K+               +                 R    +  +    A   ++FC T+ 
Sbjct: 189 KEIPIHINVGSVDALKASHNIKQYVNVVEESEKKARLKMFLGQVMVESAPKVLIFCETKR 248

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                TK L    +  + + G+  Q+ER+  L   R G + + IATDVAARG+D+ D+  
Sbjct: 249 GADILTKELRLDGWPALCIHGDKKQEERTWVLNEFRTGASPIMIATDVAARGLDIKDINF 308

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVWE 370
           VI+ +  +  E+ +HR GRTGRAG  G+S+     +  R A  L    +EA   +  E
Sbjct: 309 VINFDFPNQIEDYIHRIGRTGRAGATGVSLSFFTPDKYRMASDLIKVLKEAKQRIPPE 366


>gi|327440903|dbj|BAK17268.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 436

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/401 (27%), Positives = 194/401 (48%), Gaps = 9/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + +A+++ G+   T +Q+ ++   L+ K  +  A TG+GKT +F L +   ++ E 
Sbjct: 9   FKPFLQDAIAKLGFTEPTPIQKEMIPLVLKGKSAIGQAHTGTGKTHSFLLPIVERIVEEK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     A+  +PTRELA Q+   L  L   T +   + IGG    R    L+    
Sbjct: 69  QEV------QAVITSPTRELAQQIFDALNQLVEGTEISTKLFIGGTDKQRTIDRLKTQPQ 122

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D ++   L +     +V+DEAD   D+GF +DI+      P+K  M +FS
Sbjct: 123 IVVGTPGRIKDLVKENALLVHTAPILVVDEADLAFDMGFIEDIDGFASHMPEKLEMFVFS 182

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y    + +++  +      ID+  V V    R+  ++ +++      
Sbjct: 183 ATIPEKLKPFLKKYMDSPIHIHMNDKRPVAEGIDFVLVPVRSKARNTRLLEVIKGINPFL 242

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++FC+TR +       LAE   +   + G+LS ++R   ++ +RD   +  +ATD+AAR
Sbjct: 243 AVIFCNTRKNAESVASFLAEQGIRAGQIHGDLSPRDRKKMMKQVRDLEFQYIVATDLAAR 302

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ E+  + E  +HR GRT RAG KG ++ +     +    R+ +   + 
Sbjct: 303 GIDIQGISHVINYEIPEDLEFFIHRVGRTARAGSKGTAITLFQPEDEDAVVRIEK-MGIP 361

Query: 367 VVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V +   + E   +++R  +   +     D I    K +V 
Sbjct: 362 FVQKDIKNGEWSDLKDRHQRASRKGERKEDEIDAKAKALVR 402


>gi|320158163|ref|YP_004190541.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319933475|gb|ADV88338.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 443

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +         + +GG + + + + L     
Sbjct: 66  TKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKALARYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  K + +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERVLSEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR+   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 366 QQDIAFSEFDDLK 378


>gi|149238155|ref|XP_001524954.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032522|sp|A5E2Z9|HAS1_LODEL RecName: Full=ATP-dependent RNA helicase HAS1
 gi|146451551|gb|EDK45807.1| ATP-dependent RNA helicase DDX18 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 559

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 212/469 (45%), Gaps = 17/469 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  +  +   +A+ E G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L    
Sbjct: 94  SFEKADFSEPTMKAIKEMGFQKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVE 153

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +  P +    + I PTRELA+Q+      L         + IGG    +E   
Sbjct: 154 LLY--SLKIKPRNGTAVIIITPTRELALQIFGVARQLMEYHSQTCGIVIGGADRRQEATK 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +++V TPGRL DH++        +LKA+V+DEAD +L++GF ++++ I+   P +
Sbjct: 212 LAKGVNLLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNE 271

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R  M  +            ++       + V    +      ++   V+     R   +
Sbjct: 272 DRQTMLFSATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLL 331

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            + L+ +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      + + 
Sbjct: 332 FSFLKRNIKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQ 391

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +   
Sbjct: 392 GILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTDGKGKSLMFLTPSELG 451

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + ANV +     P+ + A  +    ++++    L     D  +      + H  
Sbjct: 452 FL-RYLKAANVPLNEYEFPANKIANVQSQLTKLIKTNYLLHQSAKDGYRAYLQAYSSHSL 510

Query: 414 EKIAA----GFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           + +        +++ ++ G   P ++      SG+   +   +  +   
Sbjct: 511 KTVYQIDKLDLVKVGKSFGFDVPPKVNITIGASGKSIEKKHKKQKRDRK 559


>gi|37676020|ref|NP_936416.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|326424408|ref|NP_763420.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
 gi|37200560|dbj|BAC96386.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|319999798|gb|AAO08410.2| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
          Length = 447

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 173/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHLDFQKATKIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +         + +GG + + + + L     
Sbjct: 70  TKALSARDPRGVILAPTRELAKQVYGELRTMLGGLSYDATLIVGGENFNDQVKALARYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  K + +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLEHKSVFLEGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 190 SATLDHAEVNDIASEMLDAPKRIAIGVSNEEHKDITQRFYLCDHLDHKEALLERVLSEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR+   R T+ L E   + +ALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRSDTDRLTEKLNEKKLKAIALSGSLNQNQRNTIMSQFERTVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDISTVTHVINFDMPKHTEEYVHRIGRTGRAGNKGDAISLVGPKDWDSFKRVEAYL 369

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 370 QQDIAFSEFDDLK 382


>gi|52081051|ref|YP_079842.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52786429|ref|YP_092258.1| YqfR [Bacillus licheniformis ATCC 14580]
 gi|52004262|gb|AAU24204.1| DEAD/DEAH box ATP dependent helicase YqfR [Bacillus licheniformis
           ATCC 14580]
 gi|52348931|gb|AAU41565.1| YqfR [Bacillus licheniformis ATCC 14580]
          Length = 439

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 195/397 (49%), Gaps = 19/397 (4%)

Query: 1   MK--IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE  ++   I EA+   G+   T +Q+ ++   L+ +  +  +QTG+GKT A+ L
Sbjct: 1   MKQTKFEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L S +  E +          +  APTRELA Q+ +E+  +    G   A+         
Sbjct: 61  PLLSRIDPEKEFV------QVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGT 114

Query: 117 ERRDLQN----GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +++   +      H+VVGTPGR+ D IR + L++    + V+DEAD MLD+GF +D++FI
Sbjct: 115 DKQKSIDKLKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFI 174

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               P+  +ML+FSATI   +    K Y  +    ++  ++     I++  +     D++
Sbjct: 175 GSHMPEGLQMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKN 234

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ ++ +     AIVF +T+ +       L +   +V  L G L+ +ER   ++ + D
Sbjct: 235 ELLLEVMTHLNPYLAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGD 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
                 IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G +V     + 
Sbjct: 295 LEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAVTFYDTSD 354

Query: 353 QRRAERLFRE----ANVSVVWEPAPSVEAIRERDAQR 385
           +    +L +      N+ +       ++  R+R   R
Sbjct: 355 EDALVKLEQMGIVFENMRIEKGEWKKIDD-RKRRQNR 390


>gi|126667283|ref|ZP_01738256.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
 gi|126628228|gb|EAZ98852.1| ATP-dependent RNA helicase [Marinobacter sp. ELB17]
          Length = 463

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/370 (30%), Positives = 180/370 (48%), Gaps = 5/370 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A++  G+   T +Q   L   L  +D++  AQTG+GKT AF +    T+L  
Sbjct: 48  NLDHRLQQAIAAIGFEYCTPIQAETLPWTLACQDLIGQAQTGTGKTAAFLITAIQTMLET 107

Query: 66  NDRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQ 122
               S   A  P  LA+APTRELA+Q+ ++ E L A TG  V  V  G     +  +   
Sbjct: 108 PIEDSKRFASEPRVLALAPTRELAMQIAKDAEQLCAHTGHKVVTVVGGMHYDKQRDQLQN 167

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V TPGRL D +  + + +  +  ++LDEAD MLD+GF  D++ I+     K   
Sbjct: 168 EVVDILVATPGRLIDFLGSQDVFLDQIDILILDEADRMLDMGFIPDVKRIIRKCTPKEDR 227

Query: 183 LM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
               FSAT +  +  LA  + + A  V I  E +    ++    LV   ++   +VN L+
Sbjct: 228 QTLLFSATFNQDVLNLASMWTQSAEFVEIEPEQKTAERVEQTVYLVGDDEKLRVLVNYLK 287

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF + R       + L      V  +SGE++Q +R   L+  + G  +V +A
Sbjct: 288 RPEVDKALVFANRRDQCRDLEEDLRNQGVSVSLMSGEIAQAKRLKTLEQFKAGSIQVLVA 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA RGI +  +  V +  L  N E+ +HR GRTGRAG  G+S+    ++       + 
Sbjct: 348 TDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGSTGVSISFAGEDDSFALPAIE 407

Query: 361 REANVSVVWE 370
           +     +  E
Sbjct: 408 KYIGQKLANE 417


>gi|326693663|ref|ZP_08230668.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc argentinum KCTC 3773]
          Length = 454

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 182/395 (46%), Gaps = 10/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL++ G+   T VQ  ++   L+ KDV+  +QTGSGKT  F + + + L  +
Sbjct: 12  NLKPEIIIALTKIGFTKPTPVQAKLIPAILQGKDVVGQSQTGSGKTHTFLIPIFNQLEQD 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                      A+   P+RELA Q+ +  +   ++    + +         + + ++   
Sbjct: 72  RQYV------QAVITTPSRELAAQITKAAKDFASQLNPDITIAEYVGGTDKLRQIKQLEN 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           N   IV+GTPGR+ D +    L +  +  +V+DEAD  LD+GF  ++++I  + PK  + 
Sbjct: 126 NQPQIVIGTPGRIKDLVESGALKLHAVHTMVVDEADMTLDMGFLTEVDYIAGAMPKDLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  + +   I         I+   +     D+++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYMANPLFEAIPVSTVIADTIENWLLATKSKDKNDVIYQVLTTG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L     +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALIFANTKDRAKEIASDLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQYFVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++ S  E  +HR GRTGR G  G+++ +   + +     L   
Sbjct: 306 LAARGIDIEGVSHVINDDIPSELEFFVHRVGRTGRNGMPGLAITLYGPDEEDEVAELE-A 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             +        + E +  +D +   Q       + 
Sbjct: 365 LGIDFKAMQLKNGEFVPVKDRRARTQRVATTRKLD 399


>gi|242033243|ref|XP_002464016.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
 gi|241917870|gb|EER91014.1| hypothetical protein SORBIDRAFT_01g010590 [Sorghum bicolor]
          Length = 750

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 339 ELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 398

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  I
Sbjct: 399 EENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEI 458

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 +
Sbjct: 459 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 518

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S+
Sbjct: 519 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESE 578

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   
Sbjct: 579 KMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGF 638

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 639 RNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTL 698

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 699 ENTDIFFDLKQMLIQSNSPVPPE 721


>gi|170050080|ref|XP_001859201.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167871660|gb|EDS35043.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 600

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 214/471 (45%), Gaps = 15/471 (3%)

Query: 4   FENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           FE++         +A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF +   
Sbjct: 107 FESLKGKVSDNTLKAITEMGFTKMTEIQAKAIPPLLAGRDLIGSAKTGSGKTLAFLIPAV 166

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     +F P +    L I+PTRELA+Q+   L+ L A       + +GG S H E  
Sbjct: 167 ELIY--KLQFKPRNGTGVLVISPTRELAMQIFGVLKELSAHHHYTYGLLMGGASRHTENE 224

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +I+V TPGRL DH          +L+ +++DE D +L++GF +D++ I+   PK
Sbjct: 225 KLSKGLNIIVATPGRLLDHLKGTPNFLFKNLQCLIIDECDRILEIGFEEDMKQIISILPK 284

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
           KR+ ++FSAT +     L K   K         +N+  + +   +   ++     R   +
Sbjct: 285 KRQTMLFSATQTSRTEELGKLALKSEPIYVGVDDNKTEATVSGLEQGYIVCPSEKRLLVL 344

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++       V ++ G+  Q +R++      +  +
Sbjct: 345 FTFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVNSIHGKQKQAKRTSVFFQFCNAES 404

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ ++  +  ++ +  +HR GRT R     G ++ ++      
Sbjct: 405 GILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGDNLCGHALLLLRPEEVA 464

Query: 355 RAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHD 412
             + L ++A V +        + A  +   + +L    FL+ S +   K  V      H 
Sbjct: 465 FLKYL-KQAKVPLNEFEFSWNKIADIQLQLETLLAKNYFLNQSGKLAFKSYVRAYEGHHM 523

Query: 413 PEKIAAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +    G L + +          P V           D RA   G G   +
Sbjct: 524 KDVFNVGNLDLLQVARNFGFTQPPHVDFGKSYKIQNSDRRAGNRGLGHFKS 574


>gi|302798402|ref|XP_002980961.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
 gi|300151500|gb|EFJ18146.1| hypothetical protein SELMODRAFT_51367 [Selaginella moellendorffii]
          Length = 653

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 123/364 (33%), Positives = 196/364 (53%), Gaps = 6/364 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+ +    ++  A++++GY N T +Q   L   L  +D++  A+TGSGKT AF L +
Sbjct: 182 VKQFKELGLDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPM 241

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ + +       P+ +  APTRELA Q+  E        G+ V+   GG+S   + 
Sbjct: 242 IVHIM-DQEELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQF 300

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           ++L+ G  IVV TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+     
Sbjct: 301 KELKAGCEIVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRP 360

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
            R+ L+FSAT+   + TLA+      VRV      R + D+   A +VA   D+   +++
Sbjct: 361 DRQTLLFSATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLS 420

Query: 238 ILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            L       + +VF ST+  V    K L +  F+V AL G+  Q  R + LQ  + G+  
Sbjct: 421 KLPQMVDAGDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFH 480

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRR 355
           V +ATDVAARG+D+  ++ V++ + + + +  +HR GRTGRAG ++G++  ++ Q   R 
Sbjct: 481 VLVATDVAARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVTQKEARF 540

Query: 356 AERL 359
           A  L
Sbjct: 541 AGDL 544


>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
 gi|74659385|sp|Q6BTL5|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii]
          Length = 771

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 220/455 (48%), Gaps = 18/455 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++   + + + LS+ GY   + +Q A +   L  KD++  A TGSGKT A+ + + 
Sbjct: 258 TTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPII 317

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL +  + S   +   + +APTRELA+QV    + +      +   + +GG+++ ++ 
Sbjct: 318 ERLLYKPAKIS---STRVIVLAPTRELAIQVCDVGKKIGQFVNNLNFGLAVGGLNLRQQE 374

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
           + L+    IV+ TPGRL DHIR     +I  L+ +V+DEAD MLD GF+ ++ E +    
Sbjct: 375 QQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILSLIP 434

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             KR+ L++SAT++  I  L +   +  VRV I         +    V +   D     +
Sbjct: 435 RHKRQTLLYSATMNTKIQDLIQLSLQKPVRVMIDPPKSAAIKLVQEFVRIRKRDHLKPAL 494

Query: 237 NIL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                           +VF + + S  +   +L     +V  L G L+Q++R  ++   +
Sbjct: 495 LFQLIKSVDPSQQNRIVVFVARKESAHKLRIILGLLGMRVSELHGSLTQEQRLASVNDFK 554

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +    V I TD+AARG+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + ++
Sbjct: 555 NLTVPVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTARAGREGKSITFVGES 614

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            Q RA  + ++A  S+  E A + +  +        ++   L+ I   +  +++ +L   
Sbjct: 615 TQDRA--IVKDAIKSISEEQARNSKQGKAVSRNVDWKEVEELNKIVESKATVIEEVL--- 669

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
           D EK A   L        A   I     +  R R 
Sbjct: 670 DEEKQAKEMLHAEMELSKATNMIKHEKEIQSRPRR 704


>gi|90408198|ref|ZP_01216366.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
 gi|90310728|gb|EAS38845.1| putative ATP-dependent RNA helicase DbpA [Psychromonas sp. CNPT3]
          Length = 462

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 129/400 (32%), Positives = 206/400 (51%), Gaps = 11/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L    Y  +T +Q   L   L  KDV+   +TGSGKT AF L L   L  + 
Sbjct: 11  LNSALLHNLKSLEYTQMTEIQAQSLPHILAGKDVIAQGKTGSGKTAAFALGLLQKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + V    GG     +   L++GA
Sbjct: 71  FRI------QSLILCPTRELADQVSSEIRRLARGIHNIKVLTLCGGAPFGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+R + L +  +  +VLDEAD MLD+GF D IE I++ +PK R+ L+F
Sbjct: 125 HIIVGTPGRIQDHLRKQTLCLDEVSMLVLDEADRMLDMGFVDAIEDIIEQAPKSRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +++N  +D V + + + +  ++   Y  ++ +  +R  A+  ++  +   
Sbjct: 185 SATFPDQIQQISRNILRDPVSIKVEAMHDDNTISQYFYLVRSAEERMLALRLLILQYQPT 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+  V    + L    F  +AL G+L Q++R  AL    +    + +ATDVAA
Sbjct: 245 SAVVFCNTKREVQEVAEELNNRGFSALALHGDLDQKDRDQALIRFSNRSCSILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L  V +  L+ + E  +HR GRTGRAG KGM+        + R   L    + 
Sbjct: 305 RGLDIENLSAVFNYNLAHDQEIHVHRIGRTGRAGSKGMAFSFYSAKDEHRIHLLEDLLDR 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++  +  P   ++ E   Q      +    I+G +K+ + 
Sbjct: 365 NIQAQELPEA-SVLELQPQ---PSAMITLRIEGGKKQKIR 400



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%)

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +          +  G KQK     ++  L    GI+   IG I++ P+  +V V
Sbjct: 380 QPQPSAMITLRIEGGKKQKIRPGDIVGALTGDDGISGDDIGKIQISPNWAYVAV 433


>gi|68070111|ref|XP_676967.1| ATP-dependent RNA helicase [Plasmodium berghei strain ANKA]
 gi|56496896|emb|CAH98719.1| ATP-dependent RNA helicase, putative [Plasmodium berghei]
          Length = 715

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 192/429 (44%), Gaps = 49/429 (11%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I   L+E+ +   T++Q+      L  KD++  A+TGSGKT+AF L  
Sbjct: 288 ITKFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPC 346

Query: 59  ASTLLAENDRFSPASAP--------------------------------------LALAI 80
              +L    +    +                                          L +
Sbjct: 347 LMHILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLIL 406

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTREL +QV  E++   ++  +      GGV  + +  +++ GA I+V TPGRL D++ 
Sbjct: 407 LPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLE 466

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT---TLA 197
              +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT    +       
Sbjct: 467 NGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDF 526

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            ++    +++  +      +      V  ++  +   +  +   +     ++FC T+ + 
Sbjct: 527 CSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNC 586

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L  H +  +++ G+  Q+ER   L   ++ R  + +ATDVA+RG+D+ ++ +VI
Sbjct: 587 DNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVI 646

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-----MQRRAERLFREANVSVVWEPA 372
           + ++ +  E+ +HR GRTGRAG KG S+   P +      QR A+ L +  N +    P 
Sbjct: 647 NYDIPNTIEDYIHRIGRTGRAGNKGQSILFFPYDYYVPQKQRFAKDLIKLLNKTNQQVPK 706

Query: 373 PSVEAIRER 381
              E +  R
Sbjct: 707 ELREIVSTR 715


>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 790

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/383 (28%), Positives = 193/383 (50%), Gaps = 8/383 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  AL+   +   T +Q   +   L  +D+L SA TGSGKT AF + +   L   
Sbjct: 210 NLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDILGSAVTGSGKTAAFMVPILERLCY- 268

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
            DR    +A   L + PTRELAVQ     + L  K    V  A+ +GG+S++ +   L+ 
Sbjct: 269 RDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRT 328

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              I++ TPGRL DH+          L  +V+DEAD ML+ GF D++E I+ + P+ R+ 
Sbjct: 329 LPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQT 388

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRY 241
           ++FSAT++ ++  L K      +RV +  +      +      + +   R  +++ + + 
Sbjct: 389 MLFSATMTDSVDELVKLSLDKPIRVFVDPKRNTAKGLTQEFVRIRSDDSRSPSLLALCKR 448

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  ++A   +   V      +   L G L+Q++R  AL   +       +AT
Sbjct: 449 TIREKCIIFFRSKALAHQMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKASTVDYLLAT 508

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ ++        HR GRT RAGRKG S+ ++ +  ++  +   +
Sbjct: 509 DLASRGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADRKMLKAAIK 568

Query: 362 EANVSVVWE---PAPSVEAIRER 381
           +A    V     P+ +V A++E+
Sbjct: 569 QAEADQVRHRIIPSEAVTAMKEK 591


>gi|308162755|gb|EFO65133.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           P15]
          Length = 391

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 189/366 (51%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   GY   +++Q   + P +  KD +  AQ+G+GKT AF + +   +   
Sbjct: 26  NLHPDLLFGIFTYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQRIDLA 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   +P A+ ++PTRELA+Q  + ++ + ++  V VA CIGG  V  +        
Sbjct: 86  ------LKSPQAIILSPTRELALQTLKVVDGIGSRLEVQVAQCIGGTQVDDDIAAA-QSC 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL   ++ K +  S++K VVLDEADEML  GF + I  I+       ++++ 
Sbjct: 139 HLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLV 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L + + +D V + +         I    V +  + +   + +I +    +
Sbjct: 199 SATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVDLQDAWKAEVVEDIYKVLSVQ 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC++   V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ A
Sbjct: 259 QGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ ++   PE  LHR GR+GR GRKG+++  + +  ++  + +  + NV
Sbjct: 319 RGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTEKDKQSMQAITDKFNV 378

Query: 366 SVVWEP 371
           +    P
Sbjct: 379 TTENLP 384


>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
 gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
          Length = 754

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 122/426 (28%), Positives = 200/426 (46%), Gaps = 35/426 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ +  A+ + GY   + +Q A +   L ++DV+  A+TGSGKT AF + +
Sbjct: 321 MRSWEESTMPEQVKRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPM 380

Query: 59  ASTLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +           A  P AL +APTRELA Q+  E           VA  +GG S+  
Sbjct: 381 LAYIQELPPMTDEVAALGPYALVMAPTRELAQQIEEETVKFAQFMNYRVASVVGGQSIEE 440

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G  IV+GTPGR+ D +  +   +     +VLDEAD M+D+GF   +  ++DS 
Sbjct: 441 QGFKLRRGCEIVIGTPGRIIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVISVMDSM 500

Query: 177 ------------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
                                    K R   MFSAT+ P++  LA+ Y ++   V I S 
Sbjct: 501 SAESLKPEEEAEKIDEQGLEASLGTKYRMTYMFSATMPPSVEKLARKYMRNPAVVTIGSA 560

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
            +    I         + +   +  +L  +    AI+F +T+  V   + +  +  + V 
Sbjct: 561 GKTSDLIKQIVQWTTSNQKPAQLELVLSQYPDTQAIIFVNTKRVVDHVSNLCFKMGYSVG 620

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G  SQ +R  +L+  + G   + +ATDVA RGID+  ++LV++ E+    EN  HR 
Sbjct: 621 AIHGGKSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIENYTHRI 680

Query: 333 GRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWE----PAPSVEAIRERDAQR 385
           GRTGRAGR+G +V  +           + L   +   V  E     A  V+ +R+    +
Sbjct: 681 GRTGRAGRQGTAVSFLTSEDTDVMYELKELLTNSGNHVPGELANHQAAKVKPMRDAKGNK 740

Query: 386 ILQDPL 391
           + +D  
Sbjct: 741 MTRDQY 746


>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
 gi|74672247|sp|Q4WRV2|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
 gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           Af293]
 gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
           A1163]
          Length = 830

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/480 (24%), Positives = 208/480 (43%), Gaps = 32/480 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 316 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 375

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 376 PRKVPTSR---VAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRP 432

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 433 DVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 492

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + S+     ++              R   ++ +   
Sbjct: 493 FSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCNE 552

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   V      +   L G +SQ++R  +++  R+G+    +AT
Sbjct: 553 IYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGKVAFLLAT 612

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  +   +
Sbjct: 613 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVK 672

Query: 362 EANVS----VVWEPAPSV------------EAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                    V     P+V            + I E   +  L+  +    +Q  + + + 
Sbjct: 673 AGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENLI 732

Query: 406 VLLAK---------HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              A+          + E+      ++    L  P +   V L +   +  DD+R    G
Sbjct: 733 KHEAEIMSRPKRTWFETERDKRAARKLGATELNGPSKKDKVKLSNKDKKRLDDARQRHEG 792


>gi|307728119|ref|YP_003905343.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gi|307582654|gb|ADN56052.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 467

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 137/400 (34%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L A N
Sbjct: 16  LPPAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDARN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 76  ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVKQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I            +    +E   ++ I  R   V   +R +A+  +L ++   
Sbjct: 190 SATYPEGI-VKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+       +VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STIAFCNTKQQCRDLLEVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIEQAQKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     + A         L  P+    I G  K+ + 
Sbjct: 369 EVEWHKLSELTATS----NEPLLPPMETLQILGGRKEKIR 404



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      + +R
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIGKINVTEMSTYVAVERSIAREAVR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|327462431|gb|EGF08756.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           sanguinis SK1057]
          Length = 447

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/466 (24%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +   T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALRDLNFFEATPVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV---AVCIGGVSVHR 116
             L  E      A +  A+  AP+RELA Q+ +    L + +   +       G     +
Sbjct: 61  QMLDEE------ADSVQAVITAPSRELAAQIYQAARQLASFSEKEIRGANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I   K  V+DEAD  LD+GF   ++ I    
Sbjct: 115 IGKLESSQPHIVIGTPGRIYDLVESGDLAIHKAKTFVVDEADMTLDMGFLATVDKIAGRL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVIADTIENWLLSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 QISQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++++D  F D+   D +   +    K D E +
Sbjct: 355 RELEK---MGIKFVP-------------KMIKDDEFQDTYDRDRRANREKSREKLDTEML 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|319955577|ref|YP_004166844.1| dead/deah box helicase domain protein [Cellulophaga algicola DSM
           14237]
 gi|319424237|gb|ADV51346.1| DEAD/DEAH box helicase domain protein [Cellulophaga algicola DSM
           14237]
          Length = 449

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/397 (26%), Positives = 185/397 (46%), Gaps = 14/397 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+ + +  A+ +  +   T +QEA  +  +  KD++  AQTG+GKT+A+ L +
Sbjct: 1   MSSFEDFNLKKQLNYAIEDLKFSAPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +      FS    P  L + PTREL +QV   +E       + V    GG +++ ++
Sbjct: 61  LQEI-----TFSKQIHPRVLVLVPTRELVLQVVENIESFAKYINIRVLGVYGGTNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +    G  I+V TPGRL D    K + +  +K +V+DE D MLDLGFR  +  + D  P 
Sbjct: 116 QQCAQGTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINLFDLLPA 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ +MFSAT++  +  L  ++     +V+IA       +I      V        ++  
Sbjct: 176 RRQNIMFSATMTDDVDALIDDFFTAPEKVSIAVSGTPLDNIKQVCYAVPNFYTKINLLIR 235

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRA 295
                   +  +VF S +    +  + +          +    +Q  R  +++   +G+ 
Sbjct: 236 LLKDKDTYQKVLVFVSNKRFADKVFEEMEVAFGNESCVIHSNKTQNYRMRSIRQFDEGKN 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ + TDV ARG+DL  +  VI+ +  + PEN +HR GR+GRA  +G SV    +  +  
Sbjct: 296 RILVTTDVMARGLDLDKITHVINFDTPNYPENYMHRIGRSGRAEHQGNSVLFYTEKEEPL 355

Query: 356 AERLFREANVSVVWEPAPSV----EAIRERDAQRILQ 388
            E +    +  +     P      E +   +  RI++
Sbjct: 356 KEAIEALMDYEIPLMAIPENVELSEELIAEERPRIIE 392


>gi|171315596|ref|ZP_02904831.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
 gi|171099267|gb|EDT44026.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           MEX-5]
          Length = 465

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 132/376 (35%), Positives = 198/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------TRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E   +S I  R   V  ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDNSKIRQRFYEVTETERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVE 376
           +     V W P   ++
Sbjct: 362 QALKREVEWHPLAELK 377



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G + + IG I V    T+V   
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLGGE 539
             V+ D +  L       K ++++ +  E
Sbjct: 437 RGVAHDALRKLNAGKIKGKRVKVRLMDEE 465


>gi|10039333|dbj|BAB13309.1| PL10-related protein PoPL10 [Ephydatia fluviatilis]
          Length = 491

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 189/387 (48%), Gaps = 16/387 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +  + ++I   +    Y   T VQ+  L   L ++D++  AQTGSGKT AF + +
Sbjct: 31  IEKFSDCQLSEIIQLNVELTHYSKPTPVQKHALPIILSKRDLMACAQTGSGKTAAFLIPI 90

Query: 59  ASTLLAENDRFSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI 109
              +  +     P+ +         P AL + PTRELAVQ+  E      ++ V   V  
Sbjct: 91  LDLVFQQGCPRPPSDSRYSGRRKQYPTALVLGPTRELAVQIFEEARKFSYRSRVRPCVVY 150

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG  +  + RDL++G H++V TPGRL D +    + +  ++ +VLDEAD MLD+GF   I
Sbjct: 151 GGADIGAQMRDLEHGCHLLVATPGRLVDMMERGKIGLDGVRYLVLDEADRMLDMGFEPQI 210

Query: 170 EFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
             I++         R+ LMFSAT    I  LA+++  D + + +        +I  + V 
Sbjct: 211 RRIVEQDVMPKTGDRQTLMFSATFPKEIQMLARDFLHDYIFLAVGRVGSTSQNITQKVVW 270

Query: 226 VALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V   D+ + ++++L         +VF  T+ +       L    +    + G+ +Q ER 
Sbjct: 271 VDECDKRSFLLDLLNASAPDTLTLVFVETKKNCDALDNFLYTQGYSCTCIHGDRTQGERE 330

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL   R  R  + +AT VAAR +D+P+++ V++ ++ ++ E  +HR GRTG+ G  G++
Sbjct: 331 QALHSFRTARMPILVATAVAARSLDIPNVKHVVNFDMPADIEEYVHRIGRTGKVGNLGLA 390

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEP 371
                +  +     L      ++   P
Sbjct: 391 TSFFNERNRNLCNDLMELLLETMQEVP 417


>gi|326503202|dbj|BAJ99226.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 591

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/502 (23%), Positives = 218/502 (43%), Gaps = 43/502 (8%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F  +P  ++  +A+ E  Y +L  +Q   +   L  +DV+ +A+TGSGKT+AF +    
Sbjct: 98  LFSELPISELTAKAIREMNYTHLAQIQARSIPHLLEGRDVMGAAKTGSGKTLAFLIPAIE 157

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N  FSP +    + + PTRELA+Q     + L       +   IGG     E   
Sbjct: 158 LLY--NLHFSPRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTLGYVIGGNGRRTEADQ 215

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +++V TPGRL DH++         LK +++DEAD +L+  F +D++ I    P+ 
Sbjct: 216 LAKGVNLLVATPGRLLDHLQNTKGFIYKRLKCLIIDEADRILEQNFEEDMKQIFKRLPQN 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---------DYRAVLVALSD 230
           R+ ++FSAT +  +   AK   +               D               ++    
Sbjct: 276 RQTVLFSATQTKEVEDFAKLSFEKNEERKEKPVYISVDDGKSNATVEGLQQGYCVIPSDK 335

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R   +   L+   +K  +VF S+ +SV    ++L     +   + G+  QQ+R+      
Sbjct: 336 RFLVLYAFLKKKQSKKVMVFFSSCSSVKFHAELLNFLQIECEDIHGKQKQQKRTTTFFNF 395

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMS-VFVI 348
                 + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R  + KG + +F++
Sbjct: 396 CKADKGILLCTNVAARGLDIPDVDYIVQYDPPDEPKDYIHRVGRTARGEKGKGSALLFLL 455

Query: 349 PQNMQRRAERLFREANVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           PQ ++       + A +S+          P++++      + I+ +  FL+    +  + 
Sbjct: 456 PQELKFLI--YLKAAKISLTEYEFNNKNVPNLQS----HLENIVGENYFLNQSAKEAYRS 509

Query: 404 VDVLLAKH-----------DPEKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFR 447
             +    H           D + +AA F      +++     +  +      V G  R  
Sbjct: 510 YILAYNSHAMKDIFNVHDLDMKAVAASFCFKNPPKVNLDLESSASKRRKTRKVDGGARRH 569

Query: 448 DDSRAFKVGGGSRDNFKGSSWF 469
             + A   G    D+ +  + F
Sbjct: 570 GINAANPYGRKGGDDNRQFARF 591


>gi|316973448|gb|EFV57036.1| ATP-dependent RNA helicase DBP8 [Trichinella spiralis]
          Length = 563

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 215/463 (46%), Gaps = 29/463 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E  +  G V  + VQ   +   L  KD +  ++TG+GKT+AF + +   L  + 
Sbjct: 112 LSSWLVEQCAVMGIVEPSPVQLNCIPEILIGKDAIGCSKTGTGKTLAFAIPIIQRLSEDP 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + P+RELA Q+G + + L    G+  ++ +GG  +  +  ++ N  H
Sbjct: 172 ------YGIYALVLTPSRELAFQIGEQFQVLGKPLGLRTSIVVGGRDMIEQANEIANQPH 225

Query: 127 IVVGTPGRLCDHI--RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           I++ TPGRL DHI  R        +K  VLDEAD +LD  +   +E I++  PK+R+ L+
Sbjct: 226 ILIATPGRLADHILSRSDENWFHKIKFFVLDEADRLLDGQYDLQLETIIEKLPKERQTLL 285

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI+ A+  L +   K        S       ++ R VL   S +D  +  +++    
Sbjct: 286 FSATITDALCRLQELSVKKPFFWQEQSCTVTVDTLEQRYVLCPKSVKDAYVTYVVKLFTD 345

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           KN     ++F  +       T + A+  F+V AL   +SQ+ER ++  + +  + ++ I 
Sbjct: 346 KNPQSSVLIFSHSCYECQALTLMFADLGFKVGALHSMISQRERLSSFNLFKSNQLKILIC 405

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RG+DLP ++LVI+  + +  +  +HR GR+ RAGR G +V  I Q      + + 
Sbjct: 406 TDVASRGLDLPFVDLVINHNIPAVAKTYIHRVGRSARAGRSGRAVTFITQYDIALLQAIE 465

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +  N  +          + ++     + + L        +++ +  +  +H  E+ A   
Sbjct: 466 KAINCQMNELK------VNDKKVSNYVTEVLVA------KREAILKMDEQHFGERRA--- 510

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
             I+R        + P  +    +R +D  ++      S    
Sbjct: 511 --INRRKEMILSGLDPEDVDRFLERRKDRKQSKDKSDMSDYRR 551


>gi|240275036|gb|EER38551.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H143]
          Length = 811

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 185/398 (46%), Gaps = 10/398 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++P  +   + LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  FEAFSDLPLSEPTADGLSACHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG  +  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK
Sbjct: 166 ERLGKMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   V++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       IVF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 YACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDP 390
              +   +  + +      S +   I+ +      +DP
Sbjct: 406 GMLKRLEQKKIPIEKINVRSKKQQSIKNQLQNMCFKDP 443


>gi|219880759|gb|ACL51654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Callithrix
           jacchus]
          Length = 654

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 173 IENFSDIDMGEIILGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 232

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 233 LSQIYTDGPGEALKAVKGNGRCGRRKQYPVSLVLAPTRELAVQIYEEARKFSYRSRVRPC 292

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD+MLD+GF 
Sbjct: 293 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIALDFCKYLVLDEADKMLDMGFE 352

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 353 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 412

Query: 223 AVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            + V   D+ + +++I          +VF  T+         L        ++ G+ SQ+
Sbjct: 413 VIWVEDLDKRSFLLDILGATGRDSLTLVFVETKKGADSLEDFLYHEGHACTSIHGDRSQR 472

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL+  R GR+ + +AT VAARG+D+ ++  VI+ +L S+ E  +HR GRTGR G  
Sbjct: 473 DREEALRQFRSGRSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 532

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 533 GLATSFFNEKNVNIAKDLLDLLVEAKQEVP 562


>gi|332675736|gb|AEE72552.1| DEAD-box ATP-dependent RNA helicase CshA [Propionibacterium acnes
           266]
          Length = 564

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 8/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++   + I +AL   G V+   +Q   +   +   D++  A+TG+GKT+AFG+ + 
Sbjct: 53  TSFADLGVREDICQALEGVGIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITIL 112

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             +    D      +    P AL + PTRELA+QV +++    +  G  V    GGV   
Sbjct: 113 QRITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDISTAASVRGTRVLTVYGGVGYE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  +VVGTPGRL D  + K L++SH + VVLDEADEMLDLGF  D+E ++  
Sbjct: 173 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHERIVVLDEADEMLDLGFLPDVENLIGR 232

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I     ++  +   VR   A       D           D+  
Sbjct: 233 TPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVYQAHPLDKIE 292

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I  IL+ +  +  I+FC T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G
Sbjct: 293 IIGRILQANDVEKVIIFCRTKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHG 352

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A + +ATDVAARGID+  +  VI+ E   + +  +HR GRTGRAG KG++V ++     
Sbjct: 353 EATILVATDVAARGIDVTGVSHVINHECPEDEKTYVHRIGRTGRAGAKGLAVTLVDWADV 412

Query: 354 RRAERLFREANVSVVW 369
            R + + +  N+ +  
Sbjct: 413 TRWKLINKTLNLELSE 428


>gi|88797378|ref|ZP_01112968.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780247|gb|EAR11432.1| Superfamily II DNA and RNA helicase [Reinekea sp. MED297]
          Length = 462

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 129/405 (31%), Positives = 202/405 (49%), Gaps = 13/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L+   Y  +T +Q+  L   L  +DV+  A+TGSGKT AFGL +   
Sbjct: 5   FSDLPLKPALLTNLNTLNYTAMTEIQQKTLPLVLDGQDVIAQAKTGSGKTAAFGLGVLQA 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L  E  R        +L + PTRELA QV +EL  L      + +    GG+    +   
Sbjct: 65  LQVERFRI------QSLILCPTRELADQVAQELRKLARAIHNIKILTLCGGMPFGPQIGS 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +GAHI+VGTPGR+ +H+R   L +  ++ +V DEAD MLD+GF++ I+ I+D  P +R
Sbjct: 119 LAHGAHIIVGTPGRIEEHLRKGTLKLDDVQTLVFDEADRMLDMGFQEVIDTIVDQVPAQR 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I +L     + A  V + S ++            +  DR      +L 
Sbjct: 179 QTLLFSATYPDEIDSLCARVTRKATLVQVESAHQADVIEQRFYRTESFDDRLQMSQRLLL 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                N ++FC+T+         L +  F  +AL G++ Q++R+  L    +G   V +A
Sbjct: 239 NDKPMNTLIFCNTKRETDEVADFLKQAGFDALALHGDMEQRQRNETLIRFANGSVSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L+ VI+  ++ +PE   HR GRTGRAG +G +     +    +  R+ 
Sbjct: 299 TDVAARGLDIDKLDAVINFHIAKDPEVHTHRIGRTGRAGERGRAYSFFAEKEGHKLLRMD 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              +     +  PS E +     Q   Q P+    I G +K+ V 
Sbjct: 359 LAQDPLGHPDTPPSAEVLN----QSPFQAPMATLQIDGGKKQKVR 399



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 60/189 (31%), Gaps = 26/189 (13%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEA----IRERDA---QRILQDPLF-LDSIQGDEKK 402
             ++R E L R AN SV    A  V A    I + DA     I +DP      I    + 
Sbjct: 277 EQRQRNETLIRFANGSVSVLVATDVAARGLDIDKLDAVINFHIAKDPEVHTHRIGRTGRA 336

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLC-APEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
                      EK     LR+  A       +  P + V  +  F+              
Sbjct: 337 GERGRAYSFFAEKEGHKLLRMDLAQDPLGHPDTPPSAEVLNQSPFQ-------------- 382

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLC-RSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                +   +  G KQK     ++  L      I+ + +G I V     +V V  +    
Sbjct: 383 --APMATLQIDGGKKQKVRPGDILGALTGGERPIDGKDVGKINVLDLSAYVAVRRNVASQ 440

Query: 521 LRRTVKLDK 529
             + ++  K
Sbjct: 441 ALKKIENGK 449


>gi|326470514|gb|EGD94523.1| ATP-dependent RNA helicase HAS1 [Trichophyton tonsurans CBS 112818]
          Length = 568

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/418 (27%), Positives = 202/418 (48%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 96  SLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDLLGAAKTGSGKTLAFLIPAVEIL--R 153

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +F P +   AL I PTRELA+Q+      L         V IGG +   E   L  G 
Sbjct: 154 SLKFKPRNGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAEKLNKGV 213

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++GTPGRL DH+R        +LK +V+DEAD +L++GF D++  I+   PK  R  M
Sbjct: 214 NVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPKDDRQTM 273

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   ++     R   + + L+
Sbjct: 274 LFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLLLFSFLK 333

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +      I 
Sbjct: 334 KNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSAQGTLIC 393

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  +  +       L
Sbjct: 394 TDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEVGFINHL 453

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            REA V VV    P+   I  +   ++++    +L+    +  +      A H    +
Sbjct: 454 -REARVPVVEFEFPTKHIINIQSQLEKLISQNYYLNQSAKEGYRSYLHAYASHSLRSV 510


>gi|322490767|emb|CBZ26031.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 527

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 207/423 (48%), Gaps = 16/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   + +  A +E G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCEELCSACAEAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +            L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLTQRK----TPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H IV             KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K    D V + +  +N     +    +    +   + +   
Sbjct: 229 DRRTMLFSATLSTKIDRLQKASLLDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLALRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEPAPSVEAIR---------ERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + ++  V  V  P+ +   ++         E++A R +++     S++ + +++      
Sbjct: 409 IEQQTGVKCVEYPSLAESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKG 468

Query: 410 KHD 412
           K D
Sbjct: 469 KRD 471


>gi|322391023|ref|ZP_08064527.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142253|gb|EFX37727.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           parasanguinis ATCC 903]
          Length = 453

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 113/466 (24%), Positives = 198/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N    I EAL E  +   T VQE ++   L   D++  ++TGSGKT  F L + 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
            TL  ++ +        A+  AP+RELA Q+ +    + + +   + +           +
Sbjct: 67  QTLNEDSQQVE------AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQ 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +      HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I  S 
Sbjct: 121 IEKLQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASSL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++ + L+FSATI   +    K Y  + V   I ++      ID   V     D++  I 
Sbjct: 181 PQQLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIY 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L     +V  + G++  +ER   +  +++    
Sbjct: 241 QLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +     
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++L++ +  D+   D +   +    K D E I
Sbjct: 361 RELEK---MGIRFVP-------------KVLKNGVIEDTYDRDRRANREKKQEKLDIEMI 404

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 405 GLVKKKKKKIKPGYKKKIKWAVDEKRRKAKRAENRARGRAERKAKR 450


>gi|189201972|ref|XP_001937322.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984421|gb|EDU49909.1| ATP-dependent RNA helicase DED1 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 611

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/432 (25%), Positives = 186/432 (43%), Gaps = 35/432 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +  V+ E +    Y   T +Q   +   L   DV+  AQTGSGKT AF + +
Sbjct: 118 VRNFEDAGLHPVMLENVKLCQYAYPTPIQAYCIPAVLTGNDVVAIAQTGSGKTAAFLVPI 177

Query: 59  ASTLLAENDRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
            S L+ +  + +                   PL L I PTRELA Q   E   L  +T +
Sbjct: 178 LSKLMGKARQLAAPRPNPIHYNPLTDKVRAEPLVLVICPTRELACQTFDEARRLCYRTMM 237

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLD 162
              V  GG     +R  L+ G  I++ TPGRL D  +    L+   LK  V+DEADE+L 
Sbjct: 238 RPCVVYGGAPSKNQREQLELGCDILIATPGRLMDFAQNANLLSFRRLKFTVIDEADELLS 297

Query: 163 LGFRDDIEFILD-----SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
             + D +E I       +      ++  +     A     +    D  R+ +      H 
Sbjct: 298 SDWEDVMEKIFQGGDTNTDADHTYLMFSATFPKAARRVAKEYMADDFFRIKVGRVGSTHE 357

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           +I  + +    + ++ A+ +++   G +  +VF +++A        L      V ++  +
Sbjct: 358 NIKQQIIWAEENAKNQALFDLIFSEGPQRTLVFTNSKAKCDMVDDFLYNKGLPVTSIHSD 417

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSG 333
            +Q+ER +AL+  R  R  + +AT V ARG+D+ +++ VI+ +L S         +HR G
Sbjct: 418 RTQREREDALRSFRTARCPILVATGVTARGLDVANIKHVINYDLPSTMHEGITEYIHRIG 477

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
           RT R G +G +            E L +            S + + E   Q I +DP  +
Sbjct: 478 RTARIGNEGKATSFFNDRNDDIGEDLTKIL--------LESKQDVPEFLQQHIPEDPTAI 529

Query: 394 DSIQGDEKKMVD 405
           D   G + +  D
Sbjct: 530 DWHDGTDDESDD 541


>gi|198244929|ref|YP_002217852.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226739544|sp|B5FN74|RHLB_SALDC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|197939445|gb|ACH76778.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326625639|gb|EGE31984.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 421

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++ + N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|320664062|gb|EFX31249.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGK  AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKMAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCATEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 50.4 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CA EE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCATEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|331217149|ref|XP_003321253.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309300243|gb|EFP76834.1| ATP-dependent RNA helicase DBP2-A [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 574

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/401 (30%), Positives = 196/401 (48%), Gaps = 32/401 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +   G+   + +Q       L  +DV+  + TGSGKT+AF +     + A+ 
Sbjct: 118 FPDYIMSEIRNAGFNAPSPIQCQAWPMALSGRDVVAVSATGSGKTIAFSIPAMIHINAQ- 176

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+  E     A + +      GGV   ++ RDL  GA 
Sbjct: 177 PLLAPGDGPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQIRDLTRGAE 236

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +  +  N+  +  +V+DEAD MLD+GF   I+ I++     R+ LMFS
Sbjct: 237 IVIATPGRLIDMLESRKTNLHRVTYLVMDEADRMLDMGFEPQIKKIVEQIRPDRQTLMFS 296

Query: 187 ATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA  Y KD ++VN+ S +   + +I     + +  ++   ++  L    ++
Sbjct: 297 ATWPKEVQRLASEYLKDFIQVNVGSLDLTANINITQIVEVCSDFEKRGKLIKHLEKISSE 356

Query: 246 NA--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
           +A  ++F  T+      TK L +  +  +A+ G+  QQER   L+  + GR+ + IATDV
Sbjct: 357 SAKVLIFVGTKRVADDLTKYLRQDGWPSLAIHGDKQQQERDWVLEEFKSGRSPIMIATDV 416

Query: 304 AARGI----------------------------DLPDLELVIHAELSSNPENLLHRSGRT 335
           A+RG+                            D+ D+  VI+ ++ +  E+ +HR GRT
Sbjct: 417 ASRGLAVPHIHLDYRARMSWAGLLLDLFFDPLGDVKDIAYVINYDMPNGIEDYIHRIGRT 476

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           GRAGR G +   I  +  + A  L +    +    P+  VE
Sbjct: 477 GRAGRTGTAYSYISADQSKLARELVKILRDAKQIVPSALVE 517


>gi|221197472|ref|ZP_03570519.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
 gi|221204145|ref|ZP_03577163.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221176311|gb|EEE08740.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2]
 gi|221184026|gb|EEE16426.1| ATP-independent RNA helicase DbpA [Burkholderia multivorans CGD2M]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 133/372 (35%), Positives = 194/372 (52%), Gaps = 10/372 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L + GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S 
Sbjct: 9   FSALPLTPAMLANLEQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLQLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V  ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTETERLHAVGMLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLIDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQAGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPA 372
           +     V W P 
Sbjct: 362 QAQKRDVEWRPL 373



 Score = 57.3 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF--KGSSWFSLSVGSKQKAEARWL 484
            L + +E+  V  +    +   + R       + D           +  G K K     +
Sbjct: 347 SLASMDEMGRVGAIEQAQKRDVEWRPLSELTPASDAPLLPPMETLQILGGRKDKIRPGDV 406

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQLKYLG 537
           +  L   +G + + IG I V    T+V     ++ D +  L       K ++++ + 
Sbjct: 407 LGALTGDAGFDGKQIGKINVTEFSTYVAVERGIAHDALRKLNAGKIKGKRVKVRLMD 463


>gi|38233323|ref|NP_939090.1| putative ATP-dependent RNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199582|emb|CAE49235.1| Putative ATP-dependent RNA helicase [Corynebacterium diphtheriae]
          Length = 436

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 181/365 (49%), Gaps = 2/365 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I +AL+  G     ++QE  L   L  +D++  A+TG GKT  FG+ L   +    D 
Sbjct: 17  REITDALATVGVKRTFAIQELTLPIALDGRDLIGQARTGMGKTYGFGVPLIDRVFDAADV 76

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P AL + PTRELA QVG +L+ L     + VA   GG     +   L++G  +V
Sbjct: 77  AELDGTPRALVVVPTRELAHQVGDDLKLLSRNIPITVATIYGGRPYEEQIAQLESGVDVV 136

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE +L +     + ++FSAT
Sbjct: 137 VGTPGRLIDLYQRGNLALDHVAVLVLDEADEMLDLGFFPDIEKLLAALTHPHQTMLFSAT 196

Query: 189 IS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           +            +    +R       + H+            D+      IL+  G   
Sbjct: 197 MPGAVVTLARTFMHHPVHIRAEDTGAAQTHASTTQVIFQAHRMDKSAVTARILQAEGRGK 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ + +     LA+  F+V  + G+L Q  R  +L   R G+A + +ATDVAAR
Sbjct: 257 TIIFARTKRTAAELADDLAQRGFRVAGVHGDLGQSAREASLDAFRTGKAHILVATDVAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++  +   + + +  E N+ 
Sbjct: 317 GLDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELPKWQLINDELNLG 376

Query: 367 VVWEP 371
               P
Sbjct: 377 QPEPP 381


>gi|58259441|ref|XP_567133.1| ATP-dependent RNA helicase ded1 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107531|ref|XP_777650.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687306|sp|Q5KN36|DED1_CRYNE RecName: Full=ATP-dependent RNA helicase ded1
 gi|50260344|gb|EAL23003.1| hypothetical protein CNBA7700 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223270|gb|AAW41314.1| ATP-dependent RNA helicase ded1, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 637

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 184/392 (46%), Gaps = 23/392 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N P   V+ E +    Y   T VQ+  +      +D++  AQTGSGKT  F   +
Sbjct: 159 VTEFTNPPINPVLLENVKYARYATPTPVQKYSIPIVADGRDLMACAQTGSGKTGGFLFPI 218

Query: 59  ASTLLAEND-------------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            S L                  R +    P AL +APTREL  Q+  E      ++ V  
Sbjct: 219 LSALFTYGPSTPPVEQDTGYGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRP 278

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
           AV  GG  +  + R L  G  ++  TPGRL D I    ++++++K +VLDEAD MLD+GF
Sbjct: 279 AVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGF 338

Query: 166 RDDIEFILDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
              I  I+D         R+ LMFSAT    I  LA+++ K+ + + +        +I  
Sbjct: 339 EPQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQ 398

Query: 222 RAVLVALSDRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
           R   V   D+ + ++++L         +VF  T+         L        ++ G+ +Q
Sbjct: 399 RVEYVDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQ 458

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL   + GRA + +AT VAARG+D+P++  VI  +L ++     HR GRTGRAG 
Sbjct: 459 REREAALYAFKSGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGN 518

Query: 341 KGMSVFVIPQ---NMQRRAERLFREANVSVVW 369
            G S     +   N+ +    L +EAN  V  
Sbjct: 519 VGTSTAFFNRGNTNIGKDLIELLKEANQEVPQ 550


>gi|328870357|gb|EGG18732.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 734

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 168/349 (48%), Gaps = 8/349 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ Q I + +    Y + + +Q   +   +  ++V+  A TGSGKT AF + +  +L   
Sbjct: 254 NMRQYILKNIRAAKYKDPSPIQMQSIPAIISGREVIACAPTGSGKTAAFSIPILQSLHE- 312

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                       + ++PTRELA Q+ R            + V    V    +   +    
Sbjct: 313 ----PKKLGFRCVIVSPTRELAQQIYRNFRLFSKGKPFKICVLSKTV-SGDQMAPISKNF 367

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
            I++ TP R+ + I+ + + ++H++ +V DEAD++ D  F + ++ ++++       +  
Sbjct: 368 DILITTPQRIVNLIQSRVVKLNHVEHLVFDEADKLFDDQFLEQVDSVINACKNASLKIHL 427

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
           FSAT++  +  +A++  K+ ++V I S+N    ++D +   +     +  A+  + +   
Sbjct: 428 FSATMNVVVEEMARSIMKNPIKVLIGSQNSASINVDQKLLFVGKEDGKLLALRQLFQKGL 487

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  ++   +   + L      V  +  + +QQ+R   +Q  R G+  V I T++
Sbjct: 488 EPPILIFVQSKERATELFQELIFDNINVDVIHSDRTQQQRDTIVQRFRSGKIWVLICTEL 547

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            ARG+D   +  VI+ +  +   + +HR GRTGRAGR+G ++ +  ++ 
Sbjct: 548 MARGMDFKGVNYVINFDFPNTIASYVHRIGRTGRAGRQGKAITLYTKDD 596


>gi|331657397|ref|ZP_08358359.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
 gi|331055645|gb|EGI27654.1| ATP-independent RNA helicase DbpA [Escherichia coli TA206]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 133/388 (34%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +TSVQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHR 116
           L   +               L + PTRELA QV  EL  L    +   +    GG     
Sbjct: 61  LLQQIDVS------LFQTQGLVLCPTRELADQVAGELRRLARFLSNTKILTLCGGQPFGM 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  LQ+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQSVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVPLEAE 381



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|242020238|ref|XP_002430562.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
 gi|212515734|gb|EEB17824.1| ATP-dependent RNA helicase DBP4, putative [Pediculus humanus
           corporis]
          Length = 606

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 112/414 (27%), Positives = 195/414 (47%), Gaps = 18/414 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F + P  +   + L E  Y+  + +Q   +   L+ +DVL +AQTGSGKT+AF + +
Sbjct: 50  IKKFSDFPLSRSTLKGLYESNYITPSEIQRESIGYALQGEDVLGAAQTGSGKTLAFLIPV 109

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   ++      AL I PTRELA Q+   L+ +         + IGG  +H E+
Sbjct: 110 LEILYCKQ--WTRLDGVGALIITPTRELAYQIFETLKKIGKHHDFSAGLIIGGKDLHFEK 167

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     I+      L         + + ++ +VLDEAD  LDLGF++ +  I+++ P 
Sbjct: 168 GRMDQCNIIICTPGRILHHMDENPLFDCNSMQILVLDEADRCLDLGFQETMNNIIENLPP 227

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +       +    +   V+  L D+   I 
Sbjct: 228 KRQTLLFSATQTKSVKDLARLSLKNPKYVAVHEHKSHSTPESLEQSYVVCELHDKIKMIW 287

Query: 237 NILRYHGAKNAIVFCSTRASVSRFT--KVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + ++ H  +  ++F S+   V               ++AL G+L Q  R          +
Sbjct: 288 SFIKNHKRQKILIFLSSCKQVKYIYLLFCRLRPGSPLLALYGKLHQLRRMKIYDEFCAKQ 347

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
             V  ATD+AARG+D PD+  V+  +   + +  +HR+GRT R  + G S+  ++P   +
Sbjct: 348 NVVMFATDIAARGLDFPDVNWVVQLDCPEDAKTYIHRAGRTARYKKGGESLLVLLPSEEK 407

Query: 354 RRAERL--FR------EANVSVVWEPAPSVEAIRERDAQ-RILQDPLFLDSIQG 398
             +E L   +      E N  ++  PA  +EA+  RD   ++     F+  I+G
Sbjct: 408 AMSEELSAEKIPISKIEINPKMLQSPARKIEALVARDPNLKLDAQRAFVAYIKG 461


>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
 gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
          Length = 787

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 207/432 (47%), Gaps = 15/432 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 163 NLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTVERLLYR 222

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 223 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIEVGLAIGGLDVKAQETVLRQNP 280

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+      +  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 281 DIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 341 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 400

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 401 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 460

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 461 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 520

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
            A  SV     P  E I +   +    +P   + +  ++ +       +           
Sbjct: 521 NAESSVKNRIIP-PEIIEKYRNKLTALEPEIQNILDEEQAERQLAKTEQQ--------LS 571

Query: 422 RIHRAGLCAPEE 433
           +  R  L  P E
Sbjct: 572 KTERKLLGQPNE 583


>gi|89900206|ref|YP_522677.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
 gi|89344943|gb|ABD69146.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
          Length = 623

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 138/527 (26%), Positives = 215/527 (40%), Gaps = 51/527 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK----------DVLVSAQTGSGKTVAFGL 56
           +   + +A+ + G+   T+VQ   +   ++            D++VS+QTGSGKT AF L
Sbjct: 59  LAPELIQAVKDLGFTQPTTVQLKTIPLAMQGHSASDDAARFIDLMVSSQTGSGKTAAFLL 118

Query: 57  ALASTLLAE------------------------------------NDRFSPASAPLALAI 80
            +  TLL +                                    N R    +AP AL +
Sbjct: 119 PVLHTLLTQMAQAEAKERSDFERAVADAAAKGEAPPKRAKRKDPTNPRHFAPAAPGALIV 178

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA QV  +   L      +    I G   ++ +      A++VV TPGRL D  R
Sbjct: 179 CPTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQNANLVVATPGRLLDLQR 238

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA   
Sbjct: 239 SMQIKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTIERKQTMMFSATFAPRIQQLASRV 298

Query: 201 QKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
            ++  R+ I S   +H++I  +         +   + + LR      A+VF ST+     
Sbjct: 299 MREPQRLQIDSPQEKHANISQKLFWADNAQHKRKLLDHWLRDTTINQALVFASTQIECDG 358

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 359 LANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTVTHVFNF 418

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
            L    E+  HR GRTGRAGR G++V       +R+   +    +  +  E  P +E  +
Sbjct: 419 GLPMKAEDYTHRIGRTGRAGRDGIAVTFAEFRDRRKIMDIEHYTHQQLKGETIPGMEPQQ 478

Query: 380 ----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEIT 435
                R                   ++       +        G      AG        
Sbjct: 479 RFPDSRPTSNFGGRESRGGGGDYHSRERGFGGGGRPGGFGANRGGFADRNAGAPRDSGNN 538

Query: 436 PVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
                S     + D+R+     G     KG      +      A  R
Sbjct: 539 GYQNASNNGFGQRDARSGGAPEGFNYERKGGFNDRFAGARNDGAAPR 585


>gi|238796726|ref|ZP_04640232.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
 gi|238719457|gb|EEQ11267.1| ATP-dependent RNA helicase srmB [Yersinia mollaretii ATCC 43969]
          Length = 441

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 122/418 (29%), Positives = 203/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFGERILNEPVELEADPSRRERKKIQQWYYRADDIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATDV
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +    +   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKEPSSKSTGKPSKKVLAKRKELKEASKEKAKVKVRHRDAKNV 425


>gi|71281141|ref|YP_268282.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
 gi|71146881|gb|AAZ27354.1| ATP-dependent RNA helicase DbpA [Colwellia psychrerythraea 34H]
          Length = 468

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 133/399 (33%), Positives = 208/399 (52%), Gaps = 11/399 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + + LS  GY  +T +Q   L   L+ KDV+  A+TGSGKT AFGLAL + L  +  R
Sbjct: 19  QDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNKLEVKKFR 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHI 127
                   ++ I PTRELA QV +EL  L      + +    GG     +   L++GAH+
Sbjct: 79  I------QSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHGAHV 132

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGRL +H+    L + +L  +VLDEAD ML++GF+  ++ I+  +P  R+ L+FSA
Sbjct: 133 IVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTLLFSA 192

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    I +++++   D V V IAS   Q +       +    DR +A+  +L  +  ++ 
Sbjct: 193 TFPDQIKSISESIMTDPVMVKIASSEDQSTISQKFFKVGNDDDRLDALRLLLLGNQVEST 252

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
            +FC+T+    +    L    F V+AL G+L Q++R   L    +  A + +ATDVAARG
Sbjct: 253 AIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARG 312

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L+LVI+  ++ + E  +HR GRTGRAG  G++  +       +   L       +
Sbjct: 313 LDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYLEAVI 372

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
             EP PS+  +         Q  +    I G +K+ V  
Sbjct: 373 TPEPLPSLAVLSNERP----QAKMATIQIDGGKKQKVRA 407



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E    G L  +   +  PE +  ++++S                         +   +
Sbjct: 355 DKESYKVGLLEDYLEAVITPEPLPSLAVLSNER-----------------PQAKMATIQI 397

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             G KQK  A  ++  L   +G+    +G I V  +  +V V+   ++L  + +   K
Sbjct: 398 DGGKKQKVRAGDILGALTGDNGVQGSQVGKISVLDNKAYVAVTKAALNLALKKISKGK 455


>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 446

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + ++   +   T +Q   +   +  KD+L S++TGSGKT+AF L     +    
Sbjct: 8   LDPRLLKKINHLAFDRATEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQRMY--R 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P  + + PTRELA QV  +L  L A T     + +GG + + + + L+N   
Sbjct: 66  SKPFTRRDPRVVILTPTRELAKQVFAQLRTLNAGTPYDGTLIVGGENFNDQVKALRNDPM 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRML 183
            VV TPGRL DH+  +  ++  L+ ++LDEAD MLDLGF  ++  I    +   ++  M 
Sbjct: 126 FVVATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFAPELRRINEAANHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +      I   ++            S            +   L  +   +  +L    
Sbjct: 186 SATLDNQEVIEIASEMLDNPKRISIGHSAEEHKDITQRFILCDHLDHKQALLDKVLETTD 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +TRA   R T  L E   + VALSG L+Q +R++ +        ++ + TD+
Sbjct: 246 YNQVIIFTATRADTDRLTNELNERKLKAVALSGNLNQNQRNSIMSQFERNCHKILVTTDI 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++ LVI+ ++  + E  +HR GRTGRAG KG +V ++     +  + +    
Sbjct: 306 ASRGLDIDNVSLVINFDMPKHAEEYVHRVGRTGRAGNKGDAVSLVGPKDWKSFKNVEAFL 365

Query: 364 NVSVVWEPAPSVE 376
           N  + +     +E
Sbjct: 366 NQRIEFSTIEGLE 378


>gi|326429375|gb|EGD74945.1| DEAD box polypeptide 47 isoform 1 [Salpingoeca sp. ATCC 50818]
          Length = 711

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/416 (28%), Positives = 191/416 (45%), Gaps = 17/416 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I       L + GY  L  +Q    +  +   D+   A+TG GKT++F L +   LLA 
Sbjct: 122 DISDKSRNNLEKHGYKYLFPIQAKTFDLIMAGNDIFGKARTGEGKTLSFALPVIEKLLAS 181

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D  +    P  L +APTRELA QV RE + +            GG     +RR  +NG 
Sbjct: 182 PD-TTRGRRPRVLVMAPTRELASQVWREFQKVGPSLASTC--IYGGTDYEPQRRAFRNGL 238

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VVGTPGRL DH+    L +++L+ +VLDEAD ML++GF D +E +L  + ++      
Sbjct: 239 DVVVGTPGRLMDHMESGALQLTNLQYLVLDEADRMLEVGFVDTVEKMLSMAVEQAGQKPQ 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI--------VN 237
               S  +    K+     +  +   +            +  L+ R            V 
Sbjct: 299 MILFSATMPPFIKSTLTKYMPEHKVVDTVGKEMNRTSTGVQHLALRCPWQARNTVIADVV 358

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        ++F  T+   +             V   G+++Q++R  +LQ  RDG+ R 
Sbjct: 359 QVYSGAHGRTMIFTQTKRDANELALNDTLKQEVQVLH-GDIAQKQRELSLQCFRDGKVRC 417

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+P+++LV+  E   + E+ +HRSGRTGRAGRKG  +     N +++  
Sbjct: 418 LVATDVAARGIDIPEVDLVVQCEPPKDVESYIHRSGRTGRAGRKGTCICFYKPNQEQQLR 477

Query: 358 RLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            + R A +S     AP    I +   RDA R L      + +    ++     + +
Sbjct: 478 EVERRAGISFTRIGAPQPADIIKASARDATRFLDS--VTNDVLVYFQEAAQAFIEE 531


>gi|116207046|ref|XP_001229332.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
 gi|118597490|sp|Q2HAD8|PRP5_CHAGB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|88183413|gb|EAQ90881.1| hypothetical protein CHGG_02816 [Chaetomium globosum CBS 148.51]
          Length = 1064

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 113/492 (22%), Positives = 217/492 (44%), Gaps = 27/492 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I + +   GY   TS+Q   L   +  +DV+  A+TGSGKT+AF L +   +  + 
Sbjct: 436 LTRPILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHI-KDQ 494

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +     +AL + PTREL  Q+  +L        +      GG ++  +  +L+ GA 
Sbjct: 495 DPVTGDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAE 554

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I+V TPGR+ D +      +++LK    +VLDEAD M D+GF   +  I ++    R+ +
Sbjct: 555 IIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNVRPDRQTI 614

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   I  L K   ++ V + +   +    +I     ++    +   ++ +L    
Sbjct: 615 LFSATMPRIIDALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVRLLELLGELY 674

Query: 244 AK----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           A      A++F   +       + +    +  +++ G   Q++R++ +   + G   + I
Sbjct: 675 ADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMI 734

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L+LV++ +  ++ E+ +HR+GRTGRAG  G +V  I +  +  A  +
Sbjct: 735 ATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGI 794

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLF---------LDSIQGD-------EKKM 403
            +    S    P   +  +R+   +++               L+ +  +       E+K 
Sbjct: 795 AKALEQSGQPVP-EQLNEMRKAWKEKVKTGKAKDASGFGGKGLERLDKEREAARVRERKT 853

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
                 + D ++         +    +       ++VS      D S A  +   +    
Sbjct: 854 HKAEGEEDDFKEEETAEDAAKKDKAKSAILAAASAIVSRESAKADASEAKPLPAAAEGAV 913

Query: 464 KGSSWFSLSVGS 475
           KG     ++ G 
Sbjct: 914 KGGVT--VNAGK 923


>gi|324113196|gb|EGC07171.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
          Length = 463

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 199/379 (52%), Gaps = 8/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY+ +T VQ A L   L  KD+ V A+TGSGKT AFGL L   +    
Sbjct: 16  LPAAQLTNLNELGYLTMTPVQAAALPAILAGKDIRVQAKTGSGKTAAFGLGLLQHID--- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125
              +      AL + PTRELA QV  EL  L         + + G      +RD  Q+  
Sbjct: 73  ---ATLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGIQRDSLQHAP 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+F
Sbjct: 130 HIIVATPGRLLDHLQKGTVSLEALHTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  ++   Q+D + + I S +      +      + S + + +  +L  +   
Sbjct: 190 SATWPEAIAAISGRVQRDPLTIEIDSTDALPPV-EQHFYETSSSGKISLLQRLLSVYQPS 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+         L +     +AL G+L Q++R   L    +G  R+ +ATDVAA
Sbjct: 249 SCVVFCNTKKDCQLVCDALNDVGQSAIALHGDLEQRDRDQTLVRFANGSVRILVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LELV++ EL+ +PE  +HR GRT RAG+ G+++        +RA  +     +
Sbjct: 309 RGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQL 368

Query: 366 SVVWEPAPSVEAIRERDAQ 384
            + W+  P+V  I    A+
Sbjct: 369 KLNWQMPPAVTTIVPLAAE 387



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 326 WDPEVHVHRIGRTARAGKSGLAISFCAPEEAQRANIISDMLQLKLNWQMPPAVTTIVPLA 385

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V  +      +
Sbjct: 386 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKITVHPAHVYVAVRQEVA---LK 442

Query: 524 TVKLDKGIQLK 534
             K  +G ++K
Sbjct: 443 AWKQLQGGKIK 453


>gi|108763762|ref|YP_633382.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
 gi|108467642|gb|ABF92827.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
          Length = 423

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 188/387 (48%), Gaps = 5/387 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++  GY   T VQ A +   LR  DV  SA+TGSGKT AF L +   L    
Sbjct: 8   LSDALTRAVAGLGYDEPTPVQRATIPVVLRGGDVWASAKTGSGKTAAFLLPILEAL--RA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                     A  + PTRELA Q+   ++         +   + +GGVS + +   L+ G
Sbjct: 66  RPGGSVRPVRAFILVPTRELAAQIVDSIQRYGQHLKKPLKTCLAVGGVSANPQMLALRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGR  D +    L +  ++ +VLDEAD +  LGF D++  +L   P +R+ L+
Sbjct: 126 ADIVVATPGRALDLVHQNALRLDQVETLVLDEADRLFSLGFADELNSLLALLPTRRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSDRDNAIVNILRYHG 243
           FSAT  PA+   A+    +  R+++       ++    RA+ V +  R   + ++L  H 
Sbjct: 186 FSATFPPAVRKFAEQLLHEPTRIDVDDGELPSTEFILQRALQVDVPRRTMLLRHLLETHA 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
             + + F ++R +       L        +L GELSQ  R+ AL   +  R RV +ATDV
Sbjct: 246 WSHVLTFVASRYTADHVALKLNRAGIVATSLHGELSQGARTRALADFKAKRVRVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  V++ +L  +  + +HR GRTGRAG KG+++  +    +     + +  
Sbjct: 306 AARGLDIAQLPAVVNYDLPRSTADYVHRIGRTGRAGDKGVAISFVSAGTEAHFRLIEKRH 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
            + +  E  P  E   E       +DP
Sbjct: 366 QLDLPREQVPGFEPTEEVSTTTPPRDP 392


>gi|320168199|gb|EFW45098.1| DEAD box polypeptide 49 [Capsaspora owczarzaki ATCC 30864]
          Length = 611

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/408 (28%), Positives = 195/408 (47%), Gaps = 8/408 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +     G  + T +Q   +   L  ++V+  A+TGSGKT AF L +   L  + 
Sbjct: 185 LKQWLVKQCEAMGLKHPTDIQVNTIKHVLAGRNVIGCAKTGSGKTAAFALPILHRLSDDP 244

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P A+ + PTRELA Q+  +   L     +  AV +GGV + ++   L    H
Sbjct: 245 ------YGPFAVVLTPTRELAFQIAEQFRALGKGINLREAVVVGGVDMMQQSLVLAKRPH 298

Query: 127 IVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
           +++ TPGRL DH+      +++  + +VLDEAD +L+ GF  D+  IL ++   +R  + 
Sbjct: 299 VIIATPGRLADHLNSNSQLSLARARFLVLDEADRLLEEGFSPDLNRILAAASNPQRQTLL 358

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI+  I  L      + V     S     + +D R V+     +D  +  +L  H  
Sbjct: 359 FSATITKNIANLESMSMSNVVHYETKSSVATVTTLDQRFVITPAKVKDCYLSYLLGQHED 418

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K+ IVF S+  +    T+++    F+ VAL  E+SQ  R  +L   +     + IATDVA
Sbjct: 419 KSIIVFTSSCRNCETITRMIKALGFRCVALHSEMSQSMRLGSLAKFKSSIVNILIATDVA 478

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+P ++LVI+ ++     + +HR GRT RAGR GM+V  + Q      + +  +  
Sbjct: 479 SRGLDIPTVKLVINNDVPRTSTDYVHRVGRTARAGRGGMAVTFVTQYDIELIQHIESKIK 538

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           V +         A+   +     +    ++  + +  +     L K D
Sbjct: 539 VKLSALTMDEDAALVNLNDVTTAKRTAIMEMAEENFGERRRRNLEKQD 586


>gi|291166420|gb|EFE28466.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Filifactor alocis
           ATCC 35896]
          Length = 381

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 200/388 (51%), Gaps = 13/388 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ +    AL +    N T +Q  ++    +  D+L  AQTG+GKT+AF + + 
Sbjct: 1   MKFKEFNLRKEHILALQDMYIENPTDIQSKVIPKMRKGNDILAHAQTGTGKTLAFLIPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++         +S   +L I PTREL+ Q+   L++      + V    GG ++  + +
Sbjct: 61  ESI------PDISSGIKSLIIVPTRELSNQITDVLKYFQKYRSLSVVNASGGHNITTQIQ 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +   IVVGTPGR+ D +R   +N  ++ + V+DE D++L  GF +D+  +++ +P+K
Sbjct: 115 KLSSNTDIVVGTPGRVLDLLRNGNINFKNIDSFVIDEMDQILAFGFLEDVILLMNKTPRK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +++ MFSAT+S  +  L+K +  + + +          +I    V    S + ++++  +
Sbjct: 175 KQVCMFSATVSQDVKKLSKQFMLNPIYLTAERGEVVLDNISQLIVQTKDSRKLSSLMYSI 234

Query: 240 RYHGAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   ++FC+++ +  + ++  +      +  L GE+SQ +R N L+  R+ + +  
Sbjct: 235 EKINPFMCMIFCNSKKNAEKLYSDFIHHQYKNMELLHGEMSQNKRENILKKFRELKVQYL 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD++ARG+++  +  VI+ ++  + E  +HR GRTGR  + G ++  + +      ++
Sbjct: 295 ITTDLSARGMNIEGVSHVINYDIPRDVEYYIHRIGRTGRMNQIGYAISFVTEKDIANMKK 354

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRI 386
           + +    ++     P V    +++ +++
Sbjct: 355 IQKRIKKTI-----PVVYDTNDKEREKM 377


>gi|254283223|ref|ZP_04958191.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
 gi|219679426|gb|EED35775.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium NOR51-B]
          Length = 409

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 198/375 (52%), Gaps = 9/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + + + LL  
Sbjct: 33  DLREEIMHGVAEAGFEYCSPIQAQILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCN 92

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                   A P A+ IAPTREL +Q+  + E L   TG   VA+  G     + ++  + 
Sbjct: 93  PLEGERFLAEPRAVIIAPTRELVMQIAADAEDLGRHTGLNTVALIGGADYQKQLQKVSRR 152

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              ++V TPGRL D +  + L +  ++ +VLDEAD MLD+GF   ++ I+ S+P+K    
Sbjct: 153 VTDLIVATPGRLIDFVERRDLYLDRVETLVLDEADRMLDMGFIPQVKRIVRSTPRKEDRQ 212

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +P I  LA+ +  D V + I  ++     +D +  LVA  +R   ++N+LR 
Sbjct: 213 TLLFSATFTPDIMNLARQWTFDPVTIEIEPDHVATDSVDQKVYLVASHERMRVLLNVLRS 272

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A + IVF + R  V    + L +       LSGE++Q +R+  L   +DG   V +AT
Sbjct: 273 DEATSVIVFANRRDQVRNVYEKLRKAGISCGILSGEVNQAKRTKTLAQFKDGTISVLVAT 332

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G+S+    ++       +  
Sbjct: 333 DVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDGFLLPDIE- 391

Query: 362 EANVSVVWEPAPSVE 376
               +++ EP P ++
Sbjct: 392 ----ALLGEPLPCIQ 402


>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 660

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/395 (26%), Positives = 182/395 (46%), Gaps = 12/395 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +P  +  AL  +G    T +Q   +   L  +D++  A TGSGKTV F + L
Sbjct: 216 IKSFREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPL 275

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGV-------VVAVCI 109
               L E  +        P  + + P+RELA Q    +++               V    
Sbjct: 276 IMLALEEEMKLPVVGGEGPFGVILCPSRELARQTFDVVDYFCKHLHRGGFPELRTVLCIG 335

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           G     +     + G H +V TPGR+ D +    ++    K + LDE D MLD+GF +++
Sbjct: 336 GEDKRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYICLDEGDRMLDMGFDEEV 395

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           + I++   ++R+ L+FSAT+       AK+     V VN+      + D+      V   
Sbjct: 396 QKIMNHFKQQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQE 455

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       I FC  +  V    + L       V++ G   Q+ER+ A+++
Sbjct: 456 AKIVYLLECLQKTAPPVCI-FCEKKQDVDDIHEYLLLKGVDAVSIHGGKEQEERNEAIKL 514

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            ++G   V IATD+AA+G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I 
Sbjct: 515 FKEGVKDVLIATDIAAKGLDFPDIQHVINFDMPDEIENYVHRIGRTGRCGKTGVATTFIN 574

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           + ++  A    +   +       P + A+ + D +
Sbjct: 575 KMVEESALLDLKHLLMEAQQRVPPVLMALEDPDQE 609


>gi|156386665|ref|XP_001634032.1| predicted protein [Nematostella vectensis]
 gi|156221110|gb|EDO41969.1| predicted protein [Nematostella vectensis]
          Length = 643

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 174/378 (46%), Gaps = 8/378 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F + P  +   + L + G+V  T +Q+  +   L  +DVL +A+TGSGKT+AF + +
Sbjct: 49  VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             TL  +  +++      AL I+PTRELA Q    L  +  K  +   + IGG  +  E+
Sbjct: 109 IETLWRQ--KWTSMDGLGALVISPTRELAYQTFEVLVKIGNKHDLSAGLIIGGKDLKNEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +     +V      L         + + L+ +VLDEAD +LD+GF   +  I+++ P 
Sbjct: 167 KRIMKTNIVVCTPGRLLQHMDETPNFDCTSLQILVLDEADRILDMGFAPTLNAIIENLPS 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L++SAT + ++         +   +  +  S+    + +    V+  L D+ N + 
Sbjct: 227 ERQTLLYSATQTRSVKDLARLSLQEPTYISAHEKSDTSTPNRLTQSYVVCELPDKLNFLF 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + +R H     +VF S+   V    +        +  ++    Q++              
Sbjct: 287 SFIRNHLKSKILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQKQLKRVAIYDEFCKKT 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P +  VI  +   +    +HR+GRT R  + G S+ V+  + ++
Sbjct: 347 QCVLFATDIAARGLDFPAVNWVIQLDCPEDANTYIHRAGRTARYQKDGQSLLVLLPSEEQ 406

Query: 355 RAERLFREANVSVVWEPA 372
              +  ++  V +     
Sbjct: 407 EMIKALKDKKVPINEIKV 424


>gi|310796577|gb|EFQ32038.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 808

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 107/469 (22%), Positives = 192/469 (40%), Gaps = 7/469 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P  +     L +  +  LT +Q   L   L+  D+L +A+TGSGKT+AF + + 
Sbjct: 53  KNFSDLPLCEATRTGLDKSHFETLTDIQSRALPLALKGSDILGAAKTGSGKTLAFVIPVL 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R++      AL I+PTRELA Q+   L  +         + IGG S+  E  
Sbjct: 113 EKLY--RARWTEYDGLGALIISPTRELAAQIFEVLRKVGRNHSFSAGLVIGGKSLKEEAE 170

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +  G ++ +L+ +VLDEAD ++D+GF+  ++ +++  P  
Sbjct: 171 RLSKMNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQSAVDALVEHLPAT 230

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I+ LA+   +D   V++  E+   +   +  +       D     I 
Sbjct: 231 RQTLLFSATQSKKISDLARLSLRDPEYVSVHEESTPKNLQQHYILTPLHEKLDTLYGFIK 290

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ-ERSNALQMMRDGRARVC 298
               +K  + F S +     +  +        +       +Q +R    +   D      
Sbjct: 291 ANLRSKIIVFFSSGKQVRFAYESMRHLQPGIPLLHLLGKQKQLQRMEITKRFADANYSCL 350

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            ATDV ARG+D P ++ V+  +   + +  +HR GRT R  R G +V  +  + +    +
Sbjct: 351 FATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYERDGKAVLFLDPSEEAGMLK 410

Query: 359 LFREANVSVVWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                 V +        +   I+++      Q+P      Q      V  +  + D E  
Sbjct: 411 RLEAKKVPIQKITVKENKKKSIKDQLQSMCFQNPDLKYLGQKAFISYVRSVYLQKDKEVF 470

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
               L +            P   +   +  +    A + G  S ++ +G
Sbjct: 471 KFDELDLDTYAASLGLPGAPQIKLRKGEDIKKIKNAPRRGMSSDEDSEG 519


>gi|67968237|dbj|BAE00180.1| VASA RNA helicase [Daphnia magna]
          Length = 779

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/360 (29%), Positives = 183/360 (50%), Gaps = 9/360 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +  ++ + +   GY+  T VQ+A +   L ++D++  A TGSGKT A+ + +
Sbjct: 346 ITSFEEAGLRPLLLQNIKNSGYIKPTPVQKASIAVILAKRDLIACAVTGSGKTAAYLVPV 405

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +            P  + +APTRELA+Q+ RE       + +   +  GG  V+
Sbjct: 406 MNILLEQGVAGASHGMLQKPEVVIVAPTRELAIQIHREACKFSYNSVLKSVIIYGGTVVN 465

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R +LQ G +I+V T GRL D +     + + ++ ++LDEAD MLD+GF  DIE +++ 
Sbjct: 466 HQRTNLQAGCNILVATAGRLKDFLDRGIFDFTAVRFLILDEADRMLDMGFGPDIEKMVNH 525

Query: 176 SPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                    R+ MFSAT    +  LA  Y +D + V        + D++      +  D+
Sbjct: 526 PTMPPKGIRRVCMFSATFPDEVQALAATYMEDYIFVTTGIVGGTNPDVEQLFFQCSKRDK 585

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++ +L+  G    IVF  ++ +       L  +  Q  ++ G+  Q +R  AL+  +
Sbjct: 586 RAKLMEVLQDLGDAKTIVFVDSKKTADFVAAFLCNNNLQSTSIHGDRLQSQREQALRDFK 645

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   + +AT+VAARG+D+  +  V++ +L ++ E  +HR GRTGR G  G S+      
Sbjct: 646 NGVRNILVATNVAARGLDIAGVNYVVNYDLPTDIEEYVHRVGRTGRVGNIGKSISFFDDE 705


>gi|119773524|ref|YP_926264.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
 gi|119766024|gb|ABL98594.1| ATP-dependent RNA helicase RhlE [Shewanella amazonensis SB2B]
          Length = 464

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/370 (31%), Positives = 179/370 (48%), Gaps = 4/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  AL    Y   T +Q+  +   L  +++L +AQTG+GKT AFGL L   L    
Sbjct: 8   LAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLIERL--SQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        A+ +APTREL VQV   L    A   + V    GGV +  +++ L  G  
Sbjct: 66  GKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQALIAGVD 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D    + +    ++ +VLDEAD MLD+GF + I  ++   P  R+ L+FS
Sbjct: 126 ILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+SP I  LAK    D V + IA  +++        V V    +   + ++++    + 
Sbjct: 186 ATLSPRIRELAKTAVPDPVEIAIAKPSKKEI--SQWLVTVDKDTKSALLSHLIQTEQWQQ 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  R   L   +DG  +  +AT VAAR
Sbjct: 244 ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVATGVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  LE V++ +L   P+  +HR GRTGRAG  G +V ++ ++  +    +       
Sbjct: 304 GIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCMIESRLGHV 363

Query: 367 VVWEPAPSVE 376
           +        E
Sbjct: 364 IERRVIEGFE 373


>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 399

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 179/370 (48%), Gaps = 2/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +A+ E GY   T +Q   +   L  +D+L +AQTG+GKT +F L +   L    
Sbjct: 8   LEQPLIDAIHELGYQKPTHIQTQAIPSALSGQDLLAAAQTGTGKTASFVLPILQKL--NA 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL + PTRELA+QV  +++       +      GGV    +++ L +G  
Sbjct: 66  GQTQKKKRARALILTPTRELALQVEEKIQSYGKYLSLKSIALYGGVDDKAQKQALIDGID 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D    + +    ++ +VLDEAD+MLD+GF + I  ILD  P+  + L+FS
Sbjct: 126 IVVATPGRLLDLYGKRAIYFEEIEILVLDEADKMLDMGFIEGINKILDRLPRDIQNLLFS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+S  +  LAK    +   ++IA+      +I+   + V    +   + ++++++    
Sbjct: 186 ATLSNKVRDLAKTAVYNPYEISIAANQASKKNIEQWLITVDKDKKSALLSHLIQHNNWDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A++F  T+   ++    L +      A     SQ  RS  L   + G  +  IAT V AR
Sbjct: 246 ALIFIETKHGAAKLASQLEKRGIYAEAFHSGRSQAIRSKLLDDFKSGEIKYLIATGVGAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L  VI+ +L    +  +HR GRTGRA   G ++  + ++  +    +       
Sbjct: 306 GIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNLCMIESRLGHL 365

Query: 367 VVWEPAPSVE 376
           +        +
Sbjct: 366 IERREIEGFQ 375


>gi|195154715|ref|XP_002018267.1| GL17616 [Drosophila persimilis]
 gi|194114063|gb|EDW36106.1| GL17616 [Drosophila persimilis]
          Length = 527

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 219/490 (44%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  KD + +AQTGSGKT AF L +   L  E 
Sbjct: 14  LRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    P  R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +     KD +  +  S       +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESLRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +    R  IA
Sbjct: 248 ENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVA+RG+D+P ++LVI+  L   P+  +HR GRT RAGRKGMS+ +   P++++     
Sbjct: 308 TDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IETEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E   V L   R +  D +R  K G 
Sbjct: 425 KDPDEMEALYRKKQKDKLKEIRRKRKLQQADSATSEEGKVLLQDERFKSVDSARFEKKGR 484

Query: 458 GSRDNFKGSS 467
           G   + K   
Sbjct: 485 GRSRSSKDGV 494


>gi|163939929|ref|YP_001644813.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229011434|ref|ZP_04168624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
 gi|229059822|ref|ZP_04197198.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|229132964|ref|ZP_04261806.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|229167008|ref|ZP_04294754.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|163862126|gb|ABY43185.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228616468|gb|EEK73547.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH621]
 gi|228650461|gb|EEL06454.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST196]
 gi|228719492|gb|EEL71094.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH603]
 gi|228749832|gb|EEL99667.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides DSM
           2048]
          Length = 389

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       +  ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVLDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           +  SATI+ A    A++   +   V +     Q    ++  ++    ++++ I  ++   
Sbjct: 175 VFCSATITKAAEDAARDLTVEPQLVRVTRSEAQSLV-EHTYIVCERREKNDYIRRVMHMG 233

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 234 NVK-AVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREVTMRAFRSGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|313677314|ref|YP_004055310.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312944012|gb|ADR23202.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 380

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 181/371 (48%), Gaps = 3/371 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   LS++   +   +Q+ ++   +  KDVL  A+TGSGKT+A+ L + + L   
Sbjct: 7   NLPIALSNVLSKQNIKSPFPIQQEVIPLAMDGKDVLGIAKTGSGKTLAYVLPILTKLNFF 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN-G 124
            +  +    P  L + PTREL+ QV    +                       +      
Sbjct: 67  PE--ARNRQPQVLILVPTRELSQQVLEVFKLFVDTNRNHSKTMAVFGGTSVNPQMQGMGE 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D +    L +S L+ +V+DEAD++L+  F+ +++ IL   P   + L+
Sbjct: 125 VKILVATPGRLLDLVSSNALKLSSLQLLVIDEADKILNANFKKELDEILKIIPGTAQKLL 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+SP +  L + Y      ++I  +  +   I   A  V  + +   +  +++    
Sbjct: 185 FSATLSPDVQKLKQLYLNKPSIIHIEQKEEKVELIKQSAYAVEANQKGPLLRYLIKSKDL 244

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF S+  S ++    L ++    +A+  + SQ  R+ AL   RDG+  V + TD+ 
Sbjct: 245 KQVMVFTSSITSANKVADKLRKNGIDALAVHSKKSQHARNQALSDFRDGKVNVLVTTDLL 304

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RGID+  L  VI+ EL  +P++ +HR GRTGRA   G ++ +I +      E + ++ N
Sbjct: 305 SRGIDIEYLPFVINYELPRSPKDFVHRIGRTGRAKHAGEAISLISKEESHHFEVIQKKIN 364

Query: 365 VSVVWEPAPSV 375
             +      ++
Sbjct: 365 YKITLTEIENI 375


>gi|150025027|ref|YP_001295853.1| DEAD-box ATP dependent DNA helicase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771568|emb|CAL43039.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
           [Flavobacterium psychrophilum JIP02/86]
          Length = 444

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 200/443 (45%), Gaps = 15/443 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLAL 58
           K F N+   + I +AL +      T +Q+  +   L  +D  +  A+TG+GKT AFGL L
Sbjct: 3   KQFANLGIAEPILKALLDLKITVPTEIQQKSVPVLLSSQDDFIGLAKTGTGKTAAFGLPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRE 117
              +   N +        A+ + PTREL  Q+   LE        V +A   GG+ +  +
Sbjct: 63  LQLINVNNAKI------QAVILVPTRELGNQIFTNLESFAKYLPEVSIASVCGGIPIKPQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              LQ   HIVV TPGRL D I+   +NI  +  ++LDEADEM         E  +D   
Sbjct: 117 IERLQQTTHIVVATPGRLIDLIKRGAINIKEINYLILDEADEMATALKEGLDEIAIDLPK 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++  L  +         +     K   +V+ + E   +S I++  ++V   ++   +++
Sbjct: 177 NRKTWLFSATMPGTVKQLVQNYMSKKVTQVSASMEIVGNSSINHEYIVVDPIEKLEVLMH 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  I+FC T+A+V++  K LA + F   A+ G L+Q  R   +   R G   +
Sbjct: 237 FLTSKEGQRGIIFCKTKAAVNKLAKNLAINRFSSGAIHGSLTQPIRDRIMDQFRAGHINI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ ++  V++  L    E  +HRSGRT RAG  G S+ ++ Q       
Sbjct: 297 LVATDLAARGIDVKEISYVVNYHLPDVHETYVHRSGRTARAGANGFSLTILQQEEIAEIA 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              +   +       P+ E+I E +A    + +        +  D K+ +  +      +
Sbjct: 357 DFEKALGIKFEKFEKPNPESIEENNAYLWAKQIFKTKPNHELSIDIKEKIKTVFHHLTKD 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPV 437
           ++      +    L    + TPV
Sbjct: 417 ELIEKL--MANYFLQNKPDTTPV 437


>gi|307705236|ref|ZP_07642104.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
 gi|307621209|gb|EFO00278.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
          Length = 447

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFTP-------------KMVKDGEFQDTYDRDRRVNREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKVKR 444


>gi|123509953|ref|XP_001329985.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121913036|gb|EAY17850.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 402

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 195/405 (48%), Gaps = 11/405 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+   G+   T +QE  +   +  +DV  +A+TGSGKT AF + L   LL ++
Sbjct: 8   VHPDIIAAVESMGWSKPTPIQEKTIKQAIAGEDVSGAAETGSGKTGAFLIPLLHQLLEKD 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      + +APTREL +Q+    + + AK  + +    GGV    +   L    H
Sbjct: 68  RPEKYG-----IILAPTRELVIQIAEVAQLMSAKLNITIVPIYGGVDDVEQMAQLAKRPH 122

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL   IR     ++  ++ +V+DEAD+M  + F DDI  I  +  K  ++++F
Sbjct: 123 IIVATPGRLAQLIRDAKGFDLKPVRVIVIDEADKMAAVEFFDDISVITSNCAKTHQIMLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +      Y K A  V + SE +    +    +    S ++  +V +L +    
Sbjct: 183 SATMPKDLEKFTALYSKKASIVELTSEKQVPQALQEYMLTSPKSQKEATLVALLHHFETS 242

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F S     +  T  L +  F V + +G +SQ +R   +Q  R+ + R+ +AT V  
Sbjct: 243 QIIIFVSGVREATILTMTLEKMNFAVGSATGGMSQFDREEQVQKFRENKIRILVATKVVG 302

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P++++V++ +L  N +  +HR+GR GRA + G+++  +     ++ + L +    
Sbjct: 303 RGVDIPNIDVVVNYDLPDNGKEYIHRAGRAGRALKSGIAITFVTMESLQKYQDLEKYLK- 361

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                  P  E  +E+  Q I +D      +  ++ K +   +  
Sbjct: 362 ----RELPKFEFDKEKKIQEISKDLEEAHELAVEKYKKLSRGIKD 402


>gi|78776342|ref|YP_392657.1| ATP-dependent RNA helicase DbpA [Sulfurimonas denitrificans DSM
           1251]
 gi|78496882|gb|ABB43422.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 457

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 123/361 (34%), Positives = 195/361 (54%), Gaps = 10/361 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F N+   + +   L+E GY  ++ +QE  L   L  KDV+  A+TGSGKT AFG+ L 
Sbjct: 5   KEFSNLNLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAKTGSGKTAAFGIGLL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             L  +  R        AL + PTREL+ QV REL  L      + +    GGV+   + 
Sbjct: 65  HKLQVKKFRV------QALILCPTRELSDQVARELRVLARFSHNIKILTLCGGVAFGPQL 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAHI+VGTPGR+  H++   L++  +  +VLDEAD MLD+GF ++I  +L+  PK
Sbjct: 119 GSLRHGAHIIVGTPGRILKHLKKDTLSLEDVDTLVLDEADRMLDMGFSEEINEVLEFVPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT +  I  ++K+ Q  A+ V   S    +   +    +     +   +++I
Sbjct: 179 NRQTLLFSATYTDEILDISKSIQNGAIHVKTTSTEIANKIEERFYEVNNAD-KIKTVIDI 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     +N I+F +T+  V    K L E     +A+ G+L Q +R++ L    +    V 
Sbjct: 238 LSNFRPQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L +VI+ +L  + E   HR GRT RAG +G++  +     + + + 
Sbjct: 298 VATDVAARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYSAYEEEKVDE 357

Query: 359 L 359
            
Sbjct: 358 Y 358



 Score = 69.6 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 69/213 (32%), Gaps = 38/213 (17%)

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD-----PE 414
           FR  NV +       V+ I +R  +  +        ++  ++  V V  A          
Sbjct: 241 FRPQNVIIFANTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLVAT 300

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG----------GGSRDNFK 464
            +AA  L I    +    ++ P SL +   R    +RA   G              D +K
Sbjct: 301 DVAARGLDIKELSMVINYDL-PHSLETYTHRIGRTARAGAEGLAFTLYSAYEEEKVDEYK 359

Query: 465 GSSWFS----------------------LSVGSKQKAEARWLMPMLCRSSGINRQSIGAI 502
             +                         +  G K K  A  ++  L   +G++  SIG I
Sbjct: 360 NDNRIFESSKTLKTVSGFVMKPQNITLVIEGGKKDKVRAGDILGALTGEAGLSGSSIGKI 419

Query: 503 RVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
            +    ++V + A  +D     +K  K    K+
Sbjct: 420 DIYDRQSYVAIEASKIDEAHDKLKSGKIKGKKF 452


>gi|330969256|gb|EGH69322.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|11890755|gb|AAF78930.2|AAF78930 RNA helicase II/Gu protein [Homo sapiens]
          Length = 715

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 139/590 (23%), Positives = 238/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTREL  QV ++   +  K    VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELCNQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 533

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 534 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 591

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 592 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 635

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 636 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 684


>gi|54294961|ref|YP_127376.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Lens]
 gi|53754793|emb|CAH16280.1| hypothetical protein lpl2040 [Legionella pneumophila str. Lens]
          Length = 468

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 206/377 (54%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L+L +
Sbjct: 12  SFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           A  AL + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLD 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHI+VGTPGR+  H++   L++S +KA++LDEAD MLD+GF DDI+ I+   PK+
Sbjct: 126 SLRHGAHIIVGTPGRILKHLKNTSLDLSQVKALILDEADRMLDMGFFDDIKNIISVCPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+K + KD   V++ +   +     +   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANKSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++ ++     +R   +
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                  + W     +E
Sbjct: 366 EDNYPHPIHWGNINELE 382



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  ++ G K K     ++  L + +G+   +IG I +    ++V +     D 
Sbjct: 391 PEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHRSQADK 447


>gi|291437415|ref|ZP_06576805.1| helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340310|gb|EFE67266.1| helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 463

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 184/371 (49%), Gaps = 11/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G +    +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 11  LPET-AEALEAVGIITPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPV 69

Query: 63  LAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 70  DVEAGRAKPEDLTDAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D    K LN++H+KA+VLDEADEMLDLGF  D+E I++  P +
Sbjct: 130 ALKKGVDVVVGTPGRLLDLAGQKKLNLAHVKALVLDEADEMLDLGFLPDVEKIINLLPVR 189

Query: 180 RRMLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+      +     +            E    ++           D+   + 
Sbjct: 190 RQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANTKQFVYRAHNMDKPEMVA 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A+VFC T+ + +     L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 250 RILQAEGRGLAMVFCRTKRTAADLADQLKQRGFASGAVHGDLGQGAREQALRAFRNGKVD 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +     +  LHR GRTGRAG KG ++ ++  +   R 
Sbjct: 310 VLVCTDVAARGIDVEGVTHVINYQSPEEEKTYLHRIGRTGRAGAKGTAITLVDWDDIPRW 369

Query: 357 ERLFREANVSV 367
           + + +   +  
Sbjct: 370 QLINKALELDF 380


>gi|24372485|ref|NP_716527.1| ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
 gi|24346478|gb|AAN53972.1|AE015534_11 ATP-dependent RNA helicase DbpA [Shewanella oneidensis MR-1]
          Length = 458

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 127/363 (34%), Positives = 195/363 (53%), Gaps = 7/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E LS  GY  +T +Q   L   L  +DV+   +TGSGKT AFGL L + L  + 
Sbjct: 8   LKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R         L + PTRELA QV +E+  L      V V    GGV +  +   L++GA
Sbjct: 68  FRI------QTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DH+    L++S+L  +VLDEAD ML++GF+  ++ I++ SP++R+ L+F
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I ++AK    + V V  A  + +++   +   L     R  A+  +L  H  +
Sbjct: 182 SATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+VFC+T+    +    L    F V+AL G+L Q++R   L    +  A V +ATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L+ V +  ++ + E  +HR GRTGRAG KG +          +   L    + 
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361

Query: 366 SVV 368
            + 
Sbjct: 362 EIT 364



 Score = 46.9 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 22/69 (31%)

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
            N        +  G K+K     ++  L   +GI    +G I V     +V V+      
Sbjct: 378 PNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILVTDYRAYVAVNRKVAKK 437

Query: 521 LRRTVKLDK 529
               +   +
Sbjct: 438 ALSKITSGR 446


>gi|269218758|ref|ZP_06162612.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211869|gb|EEZ78209.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 531

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 12/384 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F +      I +AL ++G  +   +Q   L   LR  D++  A+TG+GKT+ FG+ + 
Sbjct: 36  TVFADFGVSTPIVDALKDKGITHPFPIQALTLPVALRGNDIIGQAKTGTGKTLGFGIPML 95

Query: 60  ST---LLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                +  E     P  A   P  L I PTRELA QV  EL    A+  + +    GG +
Sbjct: 96  ENTAGIDEEGWESVPVQARGKPQGLVILPTRELAKQVAEELRAAAARRRLRIVEVYGGRA 155

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++  L+ GA IVVGTPGRL D ++ + L++++++ VVLDEADEMLDLGF +D+E IL
Sbjct: 156 YEPQQEALKEGAEIVVGTPGRLVDLMKHRFLDLTYVRTVVLDEADEMLDLGFLEDVEKIL 215

Query: 174 DSSPKKRRMLMFSATISPA---ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            S+P  R  ++FSAT+      +     +        + +        +          +
Sbjct: 216 ASTPSNRHTMLFSATMPGPVVAMARRYMSRPTHIRAADPSDTGVTVKSVRQVVYRCHALN 275

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL+  G    IVF  T+ + +R  + L E  F   AL G+L Q  R  AL+  
Sbjct: 276 KSEVLARILQAKGRGLTIVFTRTKRTAARLAEELTERGFAAGALHGDLGQGAREQALRAF 335

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G +V  +  
Sbjct: 336 RNGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYIHRIGRTGRAGQSGTAVTFVDW 395

Query: 351 NMQRRAERLFREANVSVVWEPAPS 374
           +   R   + +  N+    EP  +
Sbjct: 396 DDLPRWTLIDKALNLR-QPEPLET 418


>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
 gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
           77-13-4]
          Length = 768

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/473 (24%), Positives = 216/473 (45%), Gaps = 19/473 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  ++ + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + +
Sbjct: 254 MSSFQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKTGAFIVPI 313

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    +         + + PTRELA+Q       L A T +   + +GG+S+  + 
Sbjct: 314 LERLLYRPKKIP---TTRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLKVQE 370

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L+    +++ TPGR  DH+R     N+  ++ ++LDEAD ML+ GF D++  IL + P
Sbjct: 371 AELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILILDEADRMLEDGFADELNEILTTLP 430

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNA 234
           K R+ ++FSAT++  +  L +       RV + S+ +    +              R   
Sbjct: 431 KSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGREEKRMGY 490

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  I +    +  I+F   +    R   +          L G ++Q +R ++++  RDG+
Sbjct: 491 LAYICKTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRDGK 550

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATD+A+RG+D+  ++ VI+ E   + E  +HR GRT RAGRKG ++ +  +  ++
Sbjct: 551 VSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITLAAEPDRK 610

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             +   + A        + +++A  E D         F + I   + ++ +++  + + +
Sbjct: 611 VVKAAVKAAKAQGAKVVSRAIDA-SEADK--------FQNEIDEMDDEIDEIMQEEKEEK 661

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            +A   +++ R G    E    +     R  F  +    K     R+   G  
Sbjct: 662 HLAHVEMQV-RKGENLIEHEADIKSRPKRTWFETEHDKKKSKLAGREELNGMR 713


>gi|290955325|ref|YP_003486507.1| DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
 gi|260644851|emb|CBG67937.1| putative DEAD-box RNA-helicase [Streptomyces scabiei 87.22]
          Length = 459

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   +++ G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL        
Sbjct: 34  LPPALLRTMTDLGVTEPFPIQAATLPHALAGRDVLGRARTGSGKTLAFGLALLVR---TA 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + +  PLAL + PTRELA QV   L       GV +   +GG+S+++++  L+ GA 
Sbjct: 91  GRRAESKRPLALVLVPTRELAQQVTDALTPYAETLGVRLTTVVGGLSINKQQAALRAGAE 150

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D +  +   ++ ++  VLDEAD+M DLGF   +  IL+  P   + L+FS
Sbjct: 151 VLVATPGRLADLVSRRDCVLNQVRITVLDEADQMCDLGFLPQVSEILEQVPADGQRLLFS 210

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +++  D V  ++       + +++  + +  +D+               
Sbjct: 211 ATLDRDVDQLVRDHLHDPVPASVDRVAGSVTTMEHHVLNIHGADKYATATE--IAARDGR 268

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+A V +FT+ L     +  AL    SQ +R++ L   +DG   V +AT+VAAR
Sbjct: 269 VLMFLDTKAGVDQFTRHLRASGVRAGALHSGKSQPQRTHTLGQFKDGLITVLVATNVAAR 328

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+  +A + 
Sbjct: 329 GIHIEALDLVVNVDPPADAKDYLHRGGRTARAGESGKVVTLVTPNQRRDVNRMMSDAGIR 388

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P+V  +R  +AQ
Sbjct: 389 ------PTVTQVRSGEAQ 400


>gi|195502468|ref|XP_002098237.1| GE10265 [Drosophila yakuba]
 gi|194184338|gb|EDW97949.1| GE10265 [Drosophila yakuba]
          Length = 681

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 195 VSEATLRAVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 252

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 253 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 312

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 313 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 372

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 373 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 432

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 433 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 492

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 493 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 551

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A V +         +  I +   ++++    FL+    +  K        H  ++I
Sbjct: 552 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQI 607


>gi|194911317|ref|XP_001982328.1| GG11103 [Drosophila erecta]
 gi|190656966|gb|EDV54198.1| GG11103 [Drosophila erecta]
          Length = 683

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 197 VSEATLRAVKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 254

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 255 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 314

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 315 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 374

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 375 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 434

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 435 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 494

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 495 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 553

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A V +         +  I +   ++++    FL+    +  K        H  ++I
Sbjct: 554 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQI 609


>gi|300120970|emb|CBK21212.2| unnamed protein product [Blastocystis hominis]
          Length = 617

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 186/373 (49%), Gaps = 10/373 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + + +   G+   T +Q       L  +DV+  A TGSGKT+AF L     + A+ 
Sbjct: 199 FPADVLDVIHRAGFKAPTPIQSQGWPMALSGRDVVGIAATGSGKTLAFILPAIIHIRAQ- 257

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P   P+ L ++PTRELA Q   E       +G+      GGV   ++  DL+ GA 
Sbjct: 258 PMLRPGDGPICLVLSPTRELANQTQEECARFGTSSGIRNTCVYGGVPRRQQAYDLRRGAE 317

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL D +     N+  +  +V+DEAD MLD+GF   I  I+      R+ LM+S
Sbjct: 318 IVIATPGRLLDFLESGVTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWS 377

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT    +  LA+++  + ++VNI S + +    +      V    + +  + ILR    +
Sbjct: 378 ATWPKEVQALARDFLTNPIQVNIGSLDLKVTDHVKQVIKCVTEGQKLDETLKILRSKNPE 437

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  ++      T++L +  F  +A+ G+  Q+ER   L   + GR  + +ATDVA
Sbjct: 438 SRCIIFTQSKRGADELTRILRQRGFNALAIHGDKEQRERDFVLHEFKSGRVTIMVATDVA 497

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGR---AG-RKGMSVFVIPQ---NMQRRAE 357
           +RG+D+ D+ +VI+ +  S  E+ +HR GR GR    G  +GM+V         + R   
Sbjct: 498 SRGLDVKDIRVVINYDFPSCVEDYIHRVGRAGRKTADGYSEGMAVSFFTDTSAKVTRELI 557

Query: 358 RLFREANVSVVWE 370
           ++ REA+  V  E
Sbjct: 558 KVLREAHQDVPPE 570


>gi|290987818|ref|XP_002676619.1| predicted protein [Naegleria gruberi]
 gi|284090222|gb|EFC43875.1| predicted protein [Naegleria gruberi]
          Length = 493

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 112/387 (28%), Positives = 193/387 (49%), Gaps = 9/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTLL 63
           +P  I  A+++  +   T+VQ+  +   +   D++  A+TGSGKT ++ + +    + L 
Sbjct: 95  LPLEIINAITDLKFKEPTAVQKQCIPIAMNGIDLVGLAETGSGKTASYIIPMCCQIAKLP 154

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ND  +    P  L + PTRELA Q+ RE      +    V   IGGVS+ ++ R ++ 
Sbjct: 155 RMNDEIA-KDGPYGLILVPTRELAEQIEREATKYARQFEFRVQAIIGGVSIEKQSRLIRG 213

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSPKKRR 181
           G  I+V TPGRL D +    + ++    +VLDEAD+M+++ F  D+  I     +  +R+
Sbjct: 214 GCEILVATPGRLIDCLNNSIVVLNQCHFIVLDEADKMIEMNFEKDVNTILENMPTHIQRQ 273

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+ P +  +A  Y K  V V +    R    I+   + +   +     +  L Y
Sbjct: 274 TMLFSATMPPEVENIAMKYLKKRVTVAVGEVGRAVERIEQEVMWIKHENAKRDKLLELLY 333

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVFC+ +  V    K ++   F+  ++ G  SQ+ R++AL+  + G+  V +AT
Sbjct: 334 DADPPVIVFCNLKKEVDAIAKFVSNAGFRSTSIHGNKSQEARNSALEAFKSGKFDVIVAT 393

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAER 358
           DV  RGID+  + LV++  L        HR GRTGRAGR G +V  + ++        ++
Sbjct: 394 DVLGRGIDISGVTLVVNYSLPKTISAYTHRIGRTGRAGRTGRAVSFLTKDDTEIMYDLKK 453

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQR 385
           +      +V  E A    A ++ D ++
Sbjct: 454 MLESTKNTVPEELAQHPSAAQKPDKKK 480


>gi|109089499|ref|XP_001110939.1| PREDICTED: nucleolar RNA helicase 2-like isoform 3 [Macaca mulatta]
          Length = 783

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 141/592 (23%), Positives = 240/592 (40%), Gaps = 50/592 (8%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQSGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 601

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F        +   +       +W  L
Sbjct: 602 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNIS----YAWKEL 657

Query: 472 --SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              +G +  ++ + ++  L    G+                 +V    V  ++      +
Sbjct: 658 KEQLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSR 701

Query: 530 GIQLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
             QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 702 RWQLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752


>gi|332252169|ref|XP_003275228.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Nomascus leucogenys]
          Length = 671

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 178 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 237

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 238 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 295

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 296 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 355

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 356 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 415

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 416 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 475

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 476 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 534

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 535 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 592

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 593 SHSLKQI 599


>gi|114580554|ref|XP_515753.2| PREDICTED: ATP-dependent RNA helicase DDX18 isoform 3 [Pan
           troglodytes]
          Length = 670

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|12654791|gb|AAH01238.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|13097183|gb|AAH03360.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
 gi|19353239|gb|AAH24739.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapiens]
          Length = 670

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|62630202|gb|AAX88947.1| unknown [Homo sapiens]
          Length = 546

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 53  TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 112

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 113 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 170

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 171 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 230

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 231 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 290

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 291 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 350

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 351 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 409

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 410 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 467

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 468 SHSLKQI 474


>gi|38327634|ref|NP_006764.3| ATP-dependent RNA helicase DDX18 [Homo sapiens]
 gi|20532388|sp|Q9NVP1|DDX18_HUMAN RecName: Full=ATP-dependent RNA helicase DDX18; AltName: Full=DEAD
           box protein 18; AltName: Full=Myc-regulated DEAD box
           protein; Short=MrDb
 gi|119615599|gb|EAW95193.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
 gi|119615600|gb|EAW95194.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18, isoform CRA_b [Homo
           sapiens]
          Length = 670

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|1498229|emb|CAA67295.1| RNA helicase [Homo sapiens]
          Length = 610

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 117 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 176

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 177 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 234

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 235 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 294

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 295 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 354

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 355 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 414

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 415 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 473

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 474 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 531

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 532 SHSLKQI 538


>gi|218897115|ref|YP_002445526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|218541908|gb|ACK94302.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
          Length = 389

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/370 (27%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   + I     +        +        N  V  + + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLMRITRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|330950967|gb|EGH51227.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae Cit 7]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|302188406|ref|ZP_07265079.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           642]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|289678220|ref|ZP_06499110.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           FF5]
 gi|330975704|gb|EGH75770.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|255326979|ref|ZP_05368055.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296196|gb|EET75537.1| dead/deah box helicase [Rothia mucilaginosa ATCC 25296]
          Length = 565

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 9/367 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +    Q I +AL+  G  +   +QE  L   L  +D++  A+TG+GKT+ FGL   
Sbjct: 14  KSFADFGVRQDISDALAAVGITSPFPIQELTLPVALSGQDIIGQAKTGTGKTLGFGLPTI 73

Query: 60  STLLAENDR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++  +D          AP AL + PTRELA+QVG +L          VA   GGV + 
Sbjct: 74  QRVVGRDDEGWADLEYPGAPQALILVPTRELAIQVGEDLAIAAKLRNARVATLYGGVPIE 133

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  + VGTPGR+ D  +   LN+  +K VVLDEADEMLDLGF+  +E IL  
Sbjct: 134 PQAELLRRGLEVAVGTPGRIIDLYQQGFLNLKQVKIVVLDEADEMLDLGFQPSVEKILSY 193

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRD 232
            P+ R+ ++FSAT+   +  +A+ Y    +R+   +    ++  + I          D+D
Sbjct: 194 LPEDRQSMLFSATMPGPVIAMARQYMTKPMRISAADPEDASKTKASIRQVVYRAHHLDKD 253

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  ILR  G    ++F  T+   +R  + L    F    L G+L+Q  R  AL+  R 
Sbjct: 254 EMIGRILRATGRGRTVIFTKTKRDAARVAEELVNRGFAAAPLHGDLNQVAREQALKAFRT 313

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + +ATDVAARGID+ D+  VI+  +  + +  LHR+GRTGRAG +G +V ++  + 
Sbjct: 314 GKVDILVATDVAARGIDVEDVTHVINHRVPEDEKTYLHRTGRTGRAGNEGTAVTLVDWDD 373

Query: 353 QRRAERL 359
             R + +
Sbjct: 374 LPRWKVI 380


>gi|161486737|ref|YP_234164.2| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. syringae
           B728a]
          Length = 483

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|225434327|ref|XP_002266157.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
          Length = 568

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/373 (31%), Positives = 188/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +  + Q I + ++   Y   T +Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 122 IESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPM 181

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
               LA+         PLAL +APTRELA Q+ +E++           A+ +GG ++  +
Sbjct: 182 IQHCLAQPP-VRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNISEQ 240

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G +IVV TPGR   H++    ++S +  VVLDEAD MLD+GF   I  ++ + P
Sbjct: 241 RSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRMLDMGFEPQIREVMQNLP 300

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K + L+FSAT+   I TLA+ Y  + V+V +   +   +++      V+ S++ + ++ 
Sbjct: 301 QKHQTLLFSATMPMEIETLAQEYLNNPVQVKVGKVSCPTANVSQILEKVSESEKIDGLLA 360

Query: 238 ---------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                              IVF   +       + L     + VAL G  SQ ER  AL+
Sbjct: 361 LLVEEASQAERCGRPFPLTIVFVERKTRCDEVAEALVAQGLRAVALHGGRSQAEREAALR 420

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G   + +ATDVA+RG+D+  +  VI+ +L    EN +HR GRTGRAG  G +    
Sbjct: 421 DFRNGATNILVATDVASRGLDVTGVAHVINLDLPKAMENYVHRIGRTGRAGSTGQATSFY 480

Query: 349 PQNMQRRAERLFR 361
                     + +
Sbjct: 481 TDRDVFLVAHIRK 493


>gi|63255030|gb|AAY36126.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 485

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 102 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 161

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 162 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 221

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 222 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 281

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 282 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 341

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 342 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 401

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 402 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 461

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 462 KLGRKISCETPPT 474


>gi|71756053|ref|XP_828941.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834327|gb|EAN79829.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
 gi|261334867|emb|CBH17861.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 401

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 186/372 (50%), Gaps = 8/372 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + + +   +   GY   T++Q+  + P L+ +D++  A +GSGKT AF + L  
Sbjct: 30  TFEAMGLKKDLLHGMYGYGYKKPTAIQKRFVAPFLQSRDLVAQASSGSGKTSAFCICLLQ 89

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                            L ++PTRELA+Q       +    G+     IGG S+  + R 
Sbjct: 90  A------SEPTLRETQGLVLSPTRELALQTQDLCNNIGHYMGISAYAAIGGKSIEDDLRR 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  IV GTPGR+ D I+ + L ++HLK +VLDEADEML  GF+  I  I    P  +
Sbjct: 144 LESGVQIVSGTPGRVFDMIKRRHLRVNHLKTLVLDEADEMLGKGFKAQIHDIYRMIPPLQ 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +L+ +      +    K   +    +    E    S + Y   +    ++ + + ++  
Sbjct: 204 VVLVSATLPVDVLDMTEKFMTEPVRILVKRDEITVDSIMQYFVSVDEEKNKFDTLCDLYD 263

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                +A++FC+TR  V +  K + +  F V  + G++ Q ER   ++  R+G++RV I+
Sbjct: 264 TLTIAHAVIFCNTRKKVEQLAKKMTKEKFTVSFMHGDMPQAERDEIMRNFREGKSRVLIS 323

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ +RGID+  + LV++ +L  + E  +HR GRTGR GRKG+++  +  +  R    + 
Sbjct: 324 TDLWSRGIDVEQISLVLNYDLPFSREQYIHRIGRTGRMGRKGLAISFVKHDELRLLRDIE 383

Query: 361 REANVSVVWEPA 372
           +     +   PA
Sbjct: 384 QFYATQIEELPA 395


>gi|296118823|ref|ZP_06837399.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968312|gb|EFG81561.1| ATP-dependent RNA helicase DeaD [Corynebacterium ammoniagenes DSM
           20306]
          Length = 407

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/365 (31%), Positives = 181/365 (49%), Gaps = 3/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL+ RG  +  ++QE  L   L   D++  A+TG GKT  FG+ L   +    D  
Sbjct: 6   EICDALAARGITHTFAIQELTLPIALNGTDLIGQARTGMGKTYGFGVPLLDRVFDAADVP 65

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
               +P AL + PTRELAVQV  +L    A+  V +A  +GG     ++  L+ G  +VV
Sbjct: 66  ELDGSPRALVVVPTRELAVQVANDLSIAAAQIPVRIATILGGRDFEAQQEALRAGVDVVV 125

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM---FS 186
           GTPGR+ D  + K L +  +  +VLDEADEMLDLGF  D+E IL +        M    +
Sbjct: 126 GTPGRILDLYQRKNLRLDKVSVLVLDEADEMLDLGFLPDVEKILAALKDSPHQTMLFSAT 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +          +   +R +  S    H+            D+   +  IL+      
Sbjct: 186 MPGAIVRLARTFMNRPVHIRADAESSAPTHASTQQIIFQAHRMDKLPVLSRILQVPERGR 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+ + ++  + LA+  F V A+ G+L+QQ R  AL   RDG   + +ATDVA+R
Sbjct: 246 TLVFTRTKRTAAQVAQDLADLGFTVGAVHGDLNQQAREQALAGFRDGTVPILVATDVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +    +HR GRTGRAG  G ++ ++  +   + + +  E  + 
Sbjct: 306 GIDVEDVTHVINYQVPDDAMTYVHRIGRTGRAGHSGTAITLVGYDELLKWQGINSELGLE 365

Query: 367 VVWEP 371
               P
Sbjct: 366 QPEPP 370


>gi|253741975|gb|EES98832.1| Translation initiation factor eIF-4A, putative [Giardia
           intestinalis ATCC 50581]
          Length = 391

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 188/366 (51%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   +   GY   +++Q   + P +  KD +  AQ+G+GKT AF + +   +   
Sbjct: 26  DLHPDLLFGIFSYGYKTPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQRIDIA 85

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   +P A+ ++PTRELA+Q  + +E + ++  V VA CIGG  V  +        
Sbjct: 86  ------MKSPQAIILSPTRELALQTLKVVEGIGSRLQVEVAQCIGGTQVDDDITAA-QSC 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL   ++ K +  S++K V+LDEADEML  GF + I  I+       ++++ 
Sbjct: 139 HLIVATPGRLLSLLQKKYVTTSNVKMVILDEADEMLSRGFTEQIVSIMKFMNADIQIVLV 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L + + +D V + +         I    V +  + +   + +I +    +
Sbjct: 199 SATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLSVQ 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC++ A V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ A
Sbjct: 259 QGVIFCNSIARVKELAEKLKSAGHTISCIHSELDQAERNKIMGEFRSGQTRILIATNIIA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ ++    E  LHR GR+GR GRKG+++  +    ++  + +  + NV
Sbjct: 319 RGIDVQNVSLVINYDIPREAETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQSITDKFNV 378

Query: 366 SVVWEP 371
           +    P
Sbjct: 379 TTENLP 384


>gi|228907868|ref|ZP_04071720.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
 gi|228851763|gb|EEM96565.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 200]
          Length = 389

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|237681149|ref|NP_001153721.1| ATP-dependent RNA helicase belle [Tribolium castaneum]
 gi|270008148|gb|EFA04596.1| belle [Tribolium castaneum]
          Length = 699

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 190/387 (49%), Gaps = 21/387 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   + ++I   ++   Y   T VQ+  +   + ++DV+  AQTGSGKT AF + +
Sbjct: 214 ITSFEEVQLTEIIRNNINLARYDTPTPVQKYAIPIIVGKRDVMACAQTGSGKTAAFLVPI 273

Query: 59  ASTLLAEND------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV 112
            + +           R      PL L +APTRELA Q+  E +    ++ V   V  GG 
Sbjct: 274 LNQMYEHGPPNITHGRSRRKQYPLGLVLAPTRELATQIYDESKKFAYRSRVRPCVVYGGA 333

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            +  + RDL  G H++V TPGRL D I    + + + + +VLDEAD MLD+GF   I  I
Sbjct: 334 HIGDQMRDLDRGCHLLVATPGRLLDMIDRGRIGLDYCRYLVLDEADRMLDMGFELQIRRI 393

Query: 173 LDSSPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           ++         R+ LMFSAT    I  LA+++  + + + +        +I  + V V  
Sbjct: 394 VEKETMPKTGERQTLMFSATFPSPIQMLARDFLDNYIFLAVGRVGSTSENITQKVVWVEE 453

Query: 229 SDRDNAIVN------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            D+ + +++      + +       +VF  T+       + L    + V ++ G+ SQ+E
Sbjct: 454 HDKRSFLLDLLNAAEMSQPSAESLTLVFVETKKGADSLEEFLHFEGYPVTSIHGDRSQRE 513

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R +AL+  R G   + +AT VAARG+D+P ++ VI+ +L S+ E  +HR GRTGR G  G
Sbjct: 514 REDALRQFRSGNTPILVATAVAARGLDIPHVKHVINFDLPSDIEEYVHRIGRTGRMGNLG 573

Query: 343 MSVFVIPQNMQRRAE---RLFREANVS 366
           ++        +  A     L  EA   
Sbjct: 574 LATSFFNDRNRNLASGLLDLLIEAKQE 600


>gi|50547049|ref|XP_500994.1| YALI0B16896p [Yarrowia lipolytica]
 gi|74660102|sp|Q6CEB8|DRS1_YARLI RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49646860|emb|CAG83247.1| YALI0B16896p [Yarrowia lipolytica]
          Length = 753

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/431 (27%), Positives = 217/431 (50%), Gaps = 26/431 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  N+ + + + +S  GY   T +Q   +   L  KD++  A TGSGKT A+ + + 
Sbjct: 252 KTFQTLNLSRPVMKGISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVL 311

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL ++ + +   A   + + PTREL++QV    + L    +GV   + +GG+++  + 
Sbjct: 312 ERLLYKSSKVA---ATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQE 368

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++L+    +V+ TPGR  DH       N+  ++ +V+DEAD ML+ GF+ ++  IL   P
Sbjct: 369 QELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLP 428

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV- 236
           KKR+ L+FSAT++ +I++L +      VRV I    +  S +    V +   D     + 
Sbjct: 429 KKRQTLLFSATMNSSISSLIQLSLSRPVRVMINPPKQAASGLVQEFVRIRKRDHLKPALL 488

Query: 237 --NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              + +    +  I+F + + +  R   +L     ++  L G LSQ++R  ++   +   
Sbjct: 489 ASILKKMDKEQRTIIFVARKETAHRLRIMLGLLGVRIGELHGALSQEQRLQSITAFKKLE 548

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + + TD+A+RG+D+P +E V++ ++       LHR GRT RAGR+G S+ ++ +    
Sbjct: 549 VPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHRVGRTARAGREGRSITLVGEAAAD 608

Query: 355 RAERLFREANVSVVWEPA----------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           RA  + REA  SV               P VE +      +I +    ++ I  +EK+  
Sbjct: 609 RA--IVREAIKSVSESKQGKAVGRNVDWPEVEKLYS----KIEEKGDIVNEILAEEKEEK 662

Query: 405 DVLLAKHDPEK 415
            +L A+ +  K
Sbjct: 663 AMLQAEMEVRK 673


>gi|301090390|ref|XP_002895410.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262098662|gb|EEY56714.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 565

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 186/395 (47%), Gaps = 20/395 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE    P  I +AL  +  +  T +Q   +   L  +D++  A TGSGKTV F L L
Sbjct: 90  IKSFEYMRFPPAILDALKAKNILRPTPIQVQAIPCILAGRDMIGIAFTGSGKTVTFTLPL 149

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAK-----TGVVVAVCIGG 111
               L E  +        P  L + P+REL  Q    +    +         +  +   G
Sbjct: 150 VMLALEEEKKMPIIGHEGPFGLIVGPSRELMRQTFDVVTHFTSHLFKAGYPELRGLLCIG 209

Query: 112 VSVHRERRDLQ--NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
               R++ DL    G HIVV TPGRL   ++ + +N+   K + LDE D MLDLGF +++
Sbjct: 210 GEDKRQQSDLIASRGVHIVVATPGRLNHFLKLREMNLRLCKYICLDEGDRMLDLGFDEEV 269

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
               +    +R+ L+FSAT+       AK+     V VN+      + D+      V   
Sbjct: 270 AATFNHFTSQRQTLLFSATMPQKFQDFAKDVLVKPVLVNVGRAGAANLDVIQEVEYVKQD 329

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       I FC  +  V    + L     +  ++ G   Q+ER+ A+ +
Sbjct: 330 AKIVYLLECLQKTSPPVVI-FCERKGDVDDIYEYLILKGVEAASIHGGKDQEERNEAIDL 388

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            + G+  V +ATDVAA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++   I 
Sbjct: 389 FKSGQKDVLVATDVAAKGLDFPDIKHVINFDMPAEIENYVHRIGRTGRCGKTGVATTFIN 448

Query: 349 ---PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
              P++     + L  EA  +V     P ++A+ +
Sbjct: 449 KSVPESALLDLKHLLVEAKQTVP----PVLKALED 479


>gi|92113747|ref|YP_573675.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
 gi|91796837|gb|ABE58976.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
           DSM 3043]
          Length = 424

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 194/371 (52%), Gaps = 3/371 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLA 64
           ++P  +  A+   G+   T +Q   L   L   DV+  AQTG+GKT AF +++ +  L  
Sbjct: 50  DLPVPLMRAIHALGFEYCTPIQAEALAKTLLGGDVVGKAQTGTGKTAAFLISILAYFLEE 109

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +        AP AL +APTRELA+Q+ ++ + L   T + VA  +GG+   ++R  L   
Sbjct: 110 KAPDGQKPGAPRALIVAPTRELALQIEKDAKALARFTSLNVASVVGGMDYQKQRDQLGRK 169

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRM 182
             ++V TPGRL D    + ++++  + +VLDEAD ML +GF  D++ I+  +PK  +R+ 
Sbjct: 170 VDVLVATPGRLLDFHEKRDVDLTQTEVLVLDEADRMLSMGFIPDVKRIVRHTPKAEERQT 229

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT S  I  LA  +  DA  V I       ++ID R  LV+ SD+   +VN+L   
Sbjct: 230 FLFSATFSQDILNLANQWTHDAAHVEIEVSLENAANIDQRVYLVSDSDKQRLLVNLLNQE 289

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  IVF + R  V      L +    V  LSG++ Q  R   L   R+G   V +ATD
Sbjct: 290 NMERVIVFGNRRDLVRNLDSELRKAGINVAMLSGDVPQNTRITTLDKFRNGEVDVLVATD 349

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI + D+  V++  L  +PE+ +HR GRTGRAG +G+S+  + +        +   
Sbjct: 350 VAGRGIHIDDVSHVVNYTLPEDPEDYVHRIGRTGRAGAEGVSISFVGEEDAFALPGIESY 409

Query: 363 ANVSVVWEPAP 373
               +  +  P
Sbjct: 410 IGDKLPCQHPP 420


>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
          Length = 477

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 203/401 (50%), Gaps = 12/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + GY  +T +Q A L P L  +D++  A TGSGKT AFGLAL   L    
Sbjct: 24  LSPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERLNP-- 81

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL + PTRELA QV  E+  L   +  + V    GGV +  +   L++GA
Sbjct: 82  ----RRFAVQALVLCPTRELADQVAAEIRRLARAQENIKVVTLCGGVPLRGQAASLEHGA 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L++  L   VLDEAD MLD+GF +DI  +    P  R+ L+F
Sbjct: 138 HVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLF 197

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+ + KD  R+ + +++ +         +     R +A+  +L +   +
Sbjct: 198 SATYPEGIERIARQFMKDPQRIVVQAQHAEGKIGQRWYEVQERE-RLHAVSQLLNHFRPE 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI FC+T+       +VL    F  +AL G+L Q++R   L    +    V +ATDVAA
Sbjct: 257 SAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L+ VI+ +++ +PE  +HR GRTGRA  +G+++ +       +  R+      
Sbjct: 317 RGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIEVLQGR 376

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
              W P   +           LQ P+    I G  K+ +  
Sbjct: 377 PSEWHPLSGLTPAPGG----PLQPPMATIQIIGGRKEKIRA 413



 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L +  A L    ++  + ++ GR              G        +   +  G K+
Sbjct: 351 AEGLALSLASLPEMGQVGRIEVLQGRPSEWHPLSGLTPAPGGPLQ-PPMATIQIIGGRKE 409

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQL 533
           K  A  ++  L    G  R+ +G I V    T+V     V+      L       + ++ 
Sbjct: 410 KIRAGDVLGALTGEMGFTREQVGKINVNDFSTYVAVERSVARQAAQRLSSGRVKGRSVKA 469

Query: 534 KYLGG 538
           + +  
Sbjct: 470 RLVED 474


>gi|300724118|ref|YP_003713435.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297630652|emb|CBJ91317.1| ATP-dependent RNA helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 446

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 196/391 (50%), Gaps = 9/391 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE + + + +AL+++GY   T++Q A +   +  +DVL SA TG+GKT A+ L    
Sbjct: 6   FSEFE-LDESLLDALNDKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAIQ 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    + S    P  L + PTRELA+QV  + + L A T + +A   GGV+       
Sbjct: 65  HLLDFPRKKS--GPPRILILTPTRELAMQVAEQAKELAAHTHLDIATITGGVAYMNHAEV 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +D+E I   +  ++
Sbjct: 123 FSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDVETIAGETRWRK 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNI 238
           + L+FSAT+                    A  +R+      +    A     +   + ++
Sbjct: 183 QTLLFSATLEGESIRDFAERLLTDPVEIDAEPSRRERKKIQQFYYRADTLEHKMALLCHL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+      +IVF   R  V      L++   Q   L GE+ Q +R++A++ + DG+  V 
Sbjct: 243 LQKSDVTKSIVFVRKRERVREVADWLSQAGIQAAFLEGEMVQAKRTDAVKRLNDGKVNVL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++  +      +
Sbjct: 303 VATDVASRGLDIEDVSHVFNFDLPRTADVYLHRIGRTARAGRKGTAIALVESHDHPLLGK 362

Query: 359 LFREAN----VSVVWEPAPSVEAIRERDAQR 385
           + R  N    + VV E  P  +A  E+ + +
Sbjct: 363 ISRYLNEPMKIRVVDELRPQTKAPSEKKSYK 393


>gi|114630811|ref|XP_507825.2| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Pan troglodytes]
          Length = 783

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 239/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 601

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 602 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 659

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 660 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 703

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 704 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752


>gi|322412436|gb|EFY03344.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 447

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 200/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q I +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHSPKDIRLTNYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +E      ID   V     D++  I+ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLSNPVIEQIKTETVIADTIDNWLVSTKGRDKNGQILEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + +V+ P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIVFTP-------------KMLKNGEFQDTYDRDRRQNREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|332796635|ref|YP_004458135.1| DEAD/DEAH box helicase domain-containing protein [Acidianus
           hospitalis W1]
 gi|332694370|gb|AEE93837.1| DEAD/DEAH box helicase domain protein [Acidianus hospitalis W1]
          Length = 370

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 165/369 (44%), Gaps = 22/369 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+N+ + + +AL E  YVN T VQE  +   L+ K VL  A+TGSGKT A+ + +    
Sbjct: 21  MFKNLSEELTKALQEANYVNPTKVQELAIPQMLQGKSVLAQAKTGSGKTAAYLIPIIEK- 79

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL + PTRELA QV  E   L     + + V IGGV    + ++ +
Sbjct: 80  -----------EEQALVLTPTRELAEQVANEARKLGKYKKMSIGVIIGGVPYSGQDKEAK 128

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D      L++S     ++DE D M D+GF DD+        K    
Sbjct: 129 K--DIVIGTPGRILDLWGKGYLDLSRFSVAIVDEVDRMFDMGFIDDVR----MILKNANP 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            M+    +     +    ++ +  +     +                 RD          
Sbjct: 183 DMYGFFSATVPEEVESLAKEFSPNIEFLKVDDIKPVEIEHLFYEVKGWRDKISKLKDELD 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  IVF +T+  V    + L +     +   G+L Q+ R   L   R G+  V ++TD
Sbjct: 243 DNEKTIVFVNTKKKVEELYEELRDDFEISLL-HGDLPQRVRLRNLSSFRRGKTNVLLSTD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERL 359
           +A+RGID+ D+  VI+ +   + E  +HR GRTGR GRKG+++    +   +   + + L
Sbjct: 302 LASRGIDVIDVTKVINFDTPRDVETYIHRVGRTGRMGRKGIAITFYTRRDAQLILKIKDL 361

Query: 360 FREANVSVV 368
            +   + V 
Sbjct: 362 IKGKKLEVQ 370


>gi|296425145|ref|XP_002842103.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638362|emb|CAZ86294.1| unnamed protein product [Tuber melanosporum]
          Length = 513

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 123/422 (29%), Positives = 205/422 (48%), Gaps = 26/422 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+ +     + EA    GY N TS+Q   +   L  KD++  A+TGSGKT AF + +
Sbjct: 81  LKSFKELGVMDSLCEACENLGYKNPTSIQVESIPVALEGKDLIGLAETGSGKTAAFAIPI 140

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L          +   A  +APTRELA Q+  + E L    GV  AV +GG+ +  + 
Sbjct: 141 LQALWDNP------TGLFACILAPTRELAFQISEQFEALGGGIGVRSAVIVGGMDMMTQS 194

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             L    HI+V TPGRL DH+      ++ +LK +V+DEAD +LD+ F   ++ IL   P
Sbjct: 195 VALGKKPHILVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPILDKILKVIP 254

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + RR  +FSAT++  +  L +      VR+++ S+    S +  + + +    +D  +V 
Sbjct: 255 QTRRTYLFSATMTSKVEKLQRASLSSPVRISVGSKYSTVSTLIQKFLFIPFKHKDTYLVY 314

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  I+FC T    SR   +L    F  V L+G++SQ  R  AL   + G   +
Sbjct: 315 LMNEFAGQTTIIFCRTVQETSRLAILLRHLGFNAVPLNGQMSQSARLGALNKFKSGSRNI 374

Query: 298 CIATDVAARGIDLP-----DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +ATDVAARG+D+       L  V++ +L+ + +  +HR GRT RAGR G S+ ++ Q  
Sbjct: 375 LVATDVAARGLDMHVSPDALLYCVLNHDLAQDSKTYIHRVGRTARAGRSGRSISLVTQYE 434

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                R+       +          ++E D        +F + +   +++    L  + +
Sbjct: 435 VELFLRIEAALGKKIPEF------DVQEEDV------LIFSERVGEAQREAAKQLREERE 482

Query: 413 PE 414
            +
Sbjct: 483 KK 484


>gi|229514570|ref|ZP_04404031.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
 gi|229348550|gb|EEO13508.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
          Length = 452

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 174/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+   +   T +Q   +   +  +D+L S++ GSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLAHYNFKQATEIQHQAIPLTIAGRDLLASSRQGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  L + PTRELA QV  EL  +         +  GG + + + + L  G  
Sbjct: 70  TKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGENFNDQVKALARGPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKELRRIHNAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   +                  +  +   L  ++  +  IL    
Sbjct: 190 SATLDHADVNDMAMELLNEPKRIAIGVGSEEHKDITQHFYLCDHLDHKEALLDRILADAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TRA   R T+ L ++  + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRADTDRLTEKLNQNNLKAVALSGNLNQTQRNTIMGQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+P +  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAMSLVGPKDWESFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +E    +E
Sbjct: 370 QQEIQFEVLAGLE 382


>gi|293394818|ref|ZP_06639108.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
 gi|291422569|gb|EFE95808.1| ATP-dependent RNA helicase SrmB [Serratia odorifera DSM 4582]
          Length = 440

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 203/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +  AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L +   LL  
Sbjct: 10  DLDERLINALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVLQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  + + L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWRNQTLLF 187

Query: 186 SAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT           +  ++        S   +   + +      +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVKHKTALLVHLLQQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +++F   R  V      L E       L GE+ Q +R+ A++ M DGR  V +ATDV
Sbjct: 248 VQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +      ++ R  
Sbjct: 308 AARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKVGRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-KKMVDVLLAKHDPEKI 416
           N      V+ E  PS +   E+   +  +  L   +   ++ K+   V +   D + +
Sbjct: 368 NEPLKARVIDELRPSTKQPSEKSNGKPSKKVLAKRAESKEKNKEKAKVKVRHRDAKNV 425


>gi|24666101|ref|NP_649009.1| CG5589 [Drosophila melanogaster]
 gi|7293941|gb|AAF49303.1| CG5589 [Drosophila melanogaster]
          Length = 594

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/424 (21%), Positives = 165/424 (38%), Gaps = 19/424 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+ +P+ + + L  R + + T +Q   L   L+ + ++  A TGSGKT+AF   + + L 
Sbjct: 124 FKMLPR-LQQNLLSRNFDHPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGL- 181

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               R    +   AL +APTRELA Q+ RE   L  +TG+            ++      
Sbjct: 182 ----RAHKTTGLRALVLAPTRELAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECK 237

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             + ++ +       +  +   +  L  V     DE   L       F            
Sbjct: 238 QRYDILVSTPNRVRFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACS 297

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAI 235
             +  ++    T      K A+R              +   +       + +   +  AI
Sbjct: 298 NPTKCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSEGGKLVAI 357

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +++R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G  
Sbjct: 358 RDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAERSQHQRDNCVKAFREGSI 417

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM--- 352
            V I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q     
Sbjct: 418 WVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDTSN 477

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            R    + + +  +V       ++ +R+ +A+   + PL  + I   + +       KH 
Sbjct: 478 LRGIALIIKNSGGTVPEYML-QMKKVRKSEAKMRAKKPLDREDI-STKIRPETKGDEKHK 535

Query: 413 PEKI 416
             K+
Sbjct: 536 STKL 539


>gi|320587284|gb|EFW99764.1| ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 481

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 186/375 (49%), Gaps = 22/375 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +     + E     GY   T +Q A +   L+ +D++ +A+TGSGKT+AF L + 
Sbjct: 70  KTFKELGLVDALCEVCEMLGYTAPTPIQAAAIPVALKNRDIIGTAETGSGKTIAFALPML 129

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL   DR  P      L ++PTRELAVQ+G+  E   A +     V  G         
Sbjct: 130 QALL---DRPRPLFG---LVLSPTRELAVQIGQTFESFAAISLRCAVVVGGMDM------ 177

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  +          H+  KG ++ HL+ +V+DEAD +LD+ F   +E IL   P++
Sbjct: 178 -------VSQSIALAKKPHVVTKGFSLKHLQYLVIDEADRLLDMDFGPILEKILRHLPRE 230

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVNI 238
           RR ++FSAT+S  + +L +   +D VRVN+AS   Q         ++   + +D  +V +
Sbjct: 231 RRTMLFSATMSSQVESLQRASLRDPVRVNVASSAHQTVSTLKQSVIVTPTTRKDVCLVYL 290

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     ++ +VF  T     R   +L    F  V L   LSQ +R +AL  ++ G   + 
Sbjct: 291 VNEFYGQSIMVFTRTIYETQRLAILLRALGFGAVPLHARLSQSQRLSALNKIKSGSREML 350

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARG+D+P + +VI+ ++  + +  +HR GRT RAG+ G +V ++ Q        
Sbjct: 351 IATDVAARGLDIPHIGIVINYDVPQDSKTYVHRVGRTARAGKSGHAVNLVTQYDHTHFLA 410

Query: 359 LFREANVSVVWEPAP 373
           + +   +     P P
Sbjct: 411 VEKAIGMERKILPFP 425


>gi|268565781|ref|XP_002639546.1| C. briggsae CBR-VBH-1 protein [Caenorhabditis briggsae]
          Length = 638

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/388 (26%), Positives = 171/388 (44%), Gaps = 23/388 (5%)

Query: 5   ENIP-----QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           EN         + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L + 
Sbjct: 124 ENFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPII 183

Query: 60  STLLAENDRF---------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
             ++A                   P AL ++PTRELA+Q+ +E      KT +  A+  G
Sbjct: 184 QHIMAGGPDMIKTPTFNNGRRTYYPSALVLSPTRELAIQIHKEAAKFSYKTNLQTAILYG 243

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L++G HI++ TPGRL D I    + +S  + +VLDEAD MLD+GF   I
Sbjct: 244 GRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVLDEADRMLDMGFEPQI 303

Query: 170 EF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                  +   + +   M   +      +       +           +   +       
Sbjct: 304 RKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVGRVGSTSENIEQRLLW 363

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           +  +  R N +  ++        +VF  T+   +     L     + V++ G+L Q ER 
Sbjct: 364 VNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERE 423

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             L+M R G+  + +AT VAARG+D+P++  V++ +L  + +  +HR GRTGR G  G++
Sbjct: 424 RNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYVHRIGRTGRCGNLGIA 483

Query: 345 VFVIPQNMQ---RRAERLFREANVSVVW 369
                   +   R  + L  EAN  V  
Sbjct: 484 TSFFNDKNRGIGRDLKTLIMEANQEVPE 511


>gi|325183265|emb|CCA17723.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
 gi|325183911|emb|CCA18369.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 660

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 195/425 (45%), Gaps = 19/425 (4%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L + G  NL  +Q    +  +   +++  A+TG GKT+AF L +   LL    +  P
Sbjct: 107 KKNLKKHGIANLFPIQAMTFDKIMDGNNLIGRARTGMGKTLAFALPVVEKLLQSKIKPVP 166

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             AP  + + PTRELA QV  E E L   T +      GG    ++    ++G  IV+GT
Sbjct: 167 NRAPRVICVTPTRELARQVTTEFEKL--DTTLNTVCIYGGTPYQQQNAAFRSGTDIVIGT 224

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
            GR+ DHI    L  ++ + ++LDEAD ML++GFR+DI+ I D++ K           + 
Sbjct: 225 TGRIMDHIDRGNLRFANCEFLILDEADTMLEMGFREDIQRIFDATQKSGVKPQILLFSAT 284

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--------RYHG 243
               L +   +   +        Q SD      +  ++   +                  
Sbjct: 285 IPKWLHEIADRYMDKKYEFVNLVQDSDDQASLDVQHVAIPCHWQSRPTLLASLLGVYGKQ 344

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+   +  +          V   G+++Q +R   ++  RDG+ R+ IATDV
Sbjct: 345 NARTIIFAETKKDCNELSVHPEIKQDCHVL-HGDIAQAQRETTMKAFRDGQIRLLIATDV 403

Query: 304 AARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           AARG+D+ +++LVI++E         + +  +HRSGRTGRAG+KG+ + +     +   +
Sbjct: 404 AARGLDM-NVDLVINSEPPRKASGYADVDTYVHRSGRTGRAGKKGVCITLYTPRQKELLD 462

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ-GDEKKMVDVLLAKHDPEKI 416
            + R+     +    PS E + +  A++  +    +D +     ++  +  L  H+P+K 
Sbjct: 463 LIERKIGNKFIMRDQPSQEELIKVSAEKAFKSMDQVDPVMIAIFEEKAEEYLENHEPKKA 522

Query: 417 AAGFL 421
            A  L
Sbjct: 523 LAVAL 527


>gi|143456125|sp|Q0J7Y8|RH45_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 45
          Length = 947

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 108/454 (23%), Positives = 194/454 (42%), Gaps = 32/454 (7%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K +    +   + + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +
Sbjct: 284 IKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPM 343

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +     P   P+ L +APTREL VQ+  +++      G+      GG  V ++ 
Sbjct: 344 L-RHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQI 402

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +L+ GA IVV TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +
Sbjct: 403 SELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQN 462

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +   R+ ++FSA     +  LA+      V + +   +  + DI     +   ++R   +
Sbjct: 463 TRPDRQTVLFSAIFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPENERFLRL 522

Query: 236 VNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + +L     +  I VF  ++       K L +  +  ++L G   Q +R + L       
Sbjct: 523 LELLGEWFDRGKILVFVHSQDKCDSLLKDLFQRGYPCLSLHGGKDQTDRESTLADF---- 578

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                            +LELV++ ++ ++ E+ +HR GRTG AGRKG +V  I    +R
Sbjct: 579 ---------------KSNLELVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISDEEER 623

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            A  L +   +S    P   ++ + +R   ++ Q      + Q             ++ E
Sbjct: 624 YAPDLAKALELSEQAVPQ-DLKGLADRFMAKVKQ-----GTEQAHGTGYGGSGFKFNEEE 677

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
             A    +  +A     EE    S        R 
Sbjct: 678 DEARRSAKKAQAREYGYEEDKSDSDSDEEGGVRK 711


>gi|330899540|gb|EGH30959.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 483

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 100 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 159

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 160 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDRQLKQLEAR 219

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 220 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 279

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 280 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 339

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 340 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 399

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 400 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 459

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 460 KLGRKISCETPPT 472


>gi|228900742|ref|ZP_04064960.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
 gi|228858926|gb|EEN03368.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           IBL 4222]
          Length = 389

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I     +        +        N  V  + + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|229029843|ref|ZP_04185913.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
 gi|228731458|gb|EEL82370.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1271]
          Length = 389

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I     +        +        N  V  + + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHSEASKQEREATMRAFRSGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ Q  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|312212689|emb|CBX92772.1| hypothetical protein [Leptosphaeria maculans]
          Length = 848

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 214/533 (40%), Gaps = 41/533 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P  +   + L    +  +T VQ   +   L  +D+L +A+TGSGKT++F + + 
Sbjct: 93  KDFTDLPLSEPTKQGLKSSHFAVMTDVQAKAIPLALLGRDILAAAKTGSGKTLSFLIPVL 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L         A    AL ++PTRELA+Q+   L  +     +  A  + G       R
Sbjct: 153 ENLYRLQHVGQDA-GLGALILSPTRELAIQIFDVLRKIGRHGHMFSASLLIGGKSLEAER 211

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +     +I+V TPGRL  H+      +   LK +VLDEAD +LD+GF+ D++ I+D  PK
Sbjct: 212 NALPKTNILVATPGRLLQHLSQTAMFSADDLKMLVLDEADRILDMGFQRDVDAIIDYLPK 271

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT S  ++          + V V+   ++     +    ++  L ++ + + 
Sbjct: 272 ERQTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKGLTQNYIICPLEEKMDTLW 331

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++       + F ST  +V    +        +  L     Q++ +           +
Sbjct: 332 SFIQASKKSKILCFFSTAKTVRFVYESFRHMQPGIPLLHIHGRQKQGARLETTAKFSAAK 391

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM-SVFVIPQNMQ 353
                ATDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G   VF+ P   +
Sbjct: 392 YSCLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVVFLAPSEEE 451

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----------EKK 402
              +RL  ++  V ++         I+++      QDP      Q            +K 
Sbjct: 452 GMLKRLEAKKVPVEMINVRQKKRTTIKDQLQNMCFQDPALKYLGQKAFMTHVKSIYLQKD 511

Query: 403 MVDVLLAKHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
                L ++D E  AA         ++  +       +     ++   D   ++    K 
Sbjct: 512 KEVFKLKEYDLEAYAASLGLPGTPRIKFLQNDDSKQRKQASRQVIEVSDSSDEEETTKKA 571

Query: 456 GGGSRDNFKGSSWFSLSV-----------GSKQKAEARWLMPMLCRSSGINRQ 497
                   +     +  V           G +  A A          +G+N  
Sbjct: 572 KPVRTKYDRMFERQNQDVLAEHYKKLVRRGDEDGAAANDFTGA---ETGVNGD 621


>gi|307181904|gb|EFN69344.1| ATP-dependent RNA helicase vasa [Camponotus floridanus]
          Length = 355

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 160/350 (45%), Gaps = 12/350 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + + + GY   T VQ+  +   +  +D++  AQTGSGKT AF + +  TLL   
Sbjct: 6   LRTILLDNIKKSGYTKPTPVQKYAIPIIMSGRDLMACAQTGSGKTAAFVVPILHTLLENP 65

Query: 67  DRF---SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 S +  P  L ++PTREL  Q+ ++ +     + +   V  GG SV   R  +  
Sbjct: 66  RDLITTSTSCEPQVLIVSPTRELTQQIYQQAKKFSLNSIIRCEVAYGGTSVSHNREKIFA 125

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G H++V TPGRL D I    + +S L+  VLDEAD MLD+GF  DIE I+D         
Sbjct: 126 GCHVLVATPGRLLDFIGRGRIKLSSLRFFVLDEADRMLDMGFLPDIEKIVDHETMVPAEE 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-------SENRQHSDIDYRAVLVALSDRDNAIV 236
             +   S    +  +      ++  +                  Y+A       +    +
Sbjct: 186 RQTLMFSATFPSEIQELAGRFLKNYLFLAVGIVGGACADVQQNFYQASGQPEKRKLLKEL 245

Query: 237 NILRYHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              +      +  +VF   +         L+E  F   ++ G+  Q+ER  AL   + G+
Sbjct: 246 LDKQSQMGSIEGTLVFVEQKRHTDFIAAFLSESNFPTTSIHGDRLQREREEALSDFKRGK 305

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
             + +AT VAARG+D+ ++  VI+ +L    +  +HR GRTGR G +G +
Sbjct: 306 MSILVATAVAARGLDIKNVAHVINFDLPKTIDEYVHRIGRTGRVGNRGKA 355


>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1173

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 116/411 (28%), Positives = 205/411 (49%), Gaps = 17/411 (4%)

Query: 4    FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE++     +     + G+   +++Q   +   L  +D+L SA+TG GKT AF L + S 
Sbjct: 662  FEDLGLAPWLLACCKQLGFKAPSNIQYNTIPAILSGRDILASAKTGQGKTAAFALPILSA 721

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L  +           A+ + PTRELAVQ+G +   L +   V   V IGG+   ++   L
Sbjct: 722  LSEDP------YGIFAVVLTPTRELAVQIGEQFRALGSAINVNCCVVIGGIDNVQQSLIL 775

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                HI+V TPGRL  H+           + +VLDEAD ML   F  +++ I++  P K 
Sbjct: 776  DKRPHIIVATPGRLAAHLNNGMKLALQFCRFLVLDEADRMLGPDFELEVQKIVEHLPPKI 835

Query: 181  RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + L++SAT++ +   L     K+       ++      +    V +    +D  +V +L+
Sbjct: 836  QTLLYSATMTNSNKKLESIPIKNPYIFEDNNKYDTVETLSQYYVFMPAQAKDCHLVYLLK 895

Query: 241  YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             H + + IVF +   +V     +L +   + V+L   LSQ++R NAL+  + G+ RV IA
Sbjct: 896  KHDSSSVIVFINNCRTVEAVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIA 955

Query: 301  TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
            TDVA+RG+D+PD+++VI+ +LS++ ++ +HR GRT R GR G ++  +  +     + + 
Sbjct: 956  TDVASRGLDIPDVQMVINYKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHDVELVKNVE 1015

Query: 361  REANVSVVWEPAPSVEAI-----RERDAQRILQDPLFLDSIQGDEKKMVDV 406
                  +        EA+         A+++++  ++LD I+   K+    
Sbjct: 1016 AAIGKQLELYTTED-EAVYRHLGEASTARKLVE--IYLDEIEFGVKEKERR 1063


>gi|229161125|ref|ZP_04289112.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
 gi|228622221|gb|EEK79060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus R309803]
          Length = 389

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +     +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQVARVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|158294036|ref|XP_315363.4| AGAP005351-PA [Anopheles gambiae str. PEST]
 gi|157015378|gb|EAA11336.4| AGAP005351-PA [Anopheles gambiae str. PEST]
          Length = 640

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/377 (26%), Positives = 160/377 (42%), Gaps = 30/377 (7%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE    P  I + L   G+   T +Q       L  +D++  A+TGSGKT+++ +    
Sbjct: 86  TFEESGFPAEIIDELRYAGFTTPTPIQAQGWPIALSGRDMVGIAKTGSGKTLSYLIPALI 145

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+AL +APTRELA Q+ +  +              GG    +++ D
Sbjct: 146 HID-QQPRLRRGDGPIALILAPTRELAQQIKQVADDFGRALKYKNTCLFGGGKKRKQQDD 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R
Sbjct: 205 LEYGVEIVIATPGRLIDFLSSNQTNLRRCSYLVLDEADRMLDMGFEPQIRTIIEQIRPDR 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIV 236
           + LM+SAT    +  L K+Y KD  ++N+ S     N     I           + + ++
Sbjct: 265 QTLMWSATWPDIVARLVKDYLKDYAQINVGSLKLAANHNILQIIDVCQEYEKESKLSILL 324

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+F  T+  V   T+ +    +    + G+ SQ E              
Sbjct: 325 REIMAEKECKTIIFIETKKRVDDITRKVKRDGWPARCIHGDKSQNE-------------- 370

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
                D     +D  D++ VI+ +  +  E+ +HR GRTGR    G +      N   +A
Sbjct: 371 ----RDATLNYVD--DVKFVINFDFPTTSEDYIHRIGRTGRCNNTGTAYTFFTPNNASKA 424

Query: 357 ERL---FREANVSVVWE 370
             L    +EA   +  +
Sbjct: 425 RDLIDVLKEAKQVINPK 441


>gi|195995533|ref|XP_002107635.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
 gi|190588411|gb|EDV28433.1| hypothetical protein TRIADDRAFT_51339 [Trichoplax adhaerens]
          Length = 418

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 171/370 (46%), Gaps = 23/370 (6%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   +  KD++  A+ G+GKT A+ + L   
Sbjct: 53  FEDYCLKRDLLIGIFEKGFEKPSPIQEESIPVAVSGKDIIARAKNGTGKTGAYLIPLLQL 112

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              +       +   ++ + PTRELA+Q  +  + L     + V V  GG ++  +   L
Sbjct: 113 TDPDK------NVVQSIVLVPTRELALQTSQICKELGKHMQINVMVTTGGTNLRDDIMRL 166

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  H++V TPGR+ D  R    ++++ K +VLDEAD++L +   + +E ++   P +R+
Sbjct: 167 NDPVHVMVATPGRMFDLARRNIADLNNCKLLVLDEADKLLSMDSNEYLEGLIRLLPDRRQ 226

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +LM+SAT   ++ +    +  +A  +N+  +        Y A +                
Sbjct: 227 ILMYSATFPVSVCSFKDRHLHNAFEINLMDDLTLKGITQYYAHVHERQKVHCLNTLFA-- 284

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                          V    K + +  +    +  ++SQ +R+      R G  R  + T
Sbjct: 285 -------------KRVELLAKKITQLGYSCFYIHAQMSQHDRNRVFHDFRRGECRNLVCT 331

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +VI+ +   + E  LHR GR+GR G  G+++ ++  N +R   ++  
Sbjct: 332 DLFTRGIDIQAVNVVINFDFPISSETYLHRIGRSGRFGHLGLAINLVTPNDRRSLYQIEE 391

Query: 362 EANVSVVWEP 371
           E   ++   P
Sbjct: 392 ELATTIKAIP 401


>gi|163800192|ref|ZP_02194093.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
 gi|159175635|gb|EDP60429.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           AND4]
          Length = 443

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++   A  P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+    
Sbjct: 66  NKSFSARDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALVLGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I  ++  +RR  +  
Sbjct: 126 FIVATPGRLADHLDHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 185

Query: 187 ATISPAITTL---AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +            ++            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHAEVNGIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+  +  VI+ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 306 ASRGIDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 366 QQDLSFSVLEGLK 378


>gi|48146237|emb|CAG33341.1| DDX18 [Homo sapiens]
          Length = 610

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 117 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 176

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 177 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 234

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 235 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 294

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 295 PTRRQTMLFSATQTRKVEDLARISLKKGPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 354

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 355 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 414

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 415 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 473

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 474 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 531

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 532 SHSLKQI 538


>gi|322815569|gb|EFZ24204.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 544

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 215/450 (47%), Gaps = 14/450 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +  A +E G+ N T +Q A +      +D++  AQTGSGKT A+ L L + LL + 
Sbjct: 77  LCEELISACAEAGWQNPTRIQAATIPVVKEGRDIIGVAQTGSGKTGAYVLPLVNWLLTQ- 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L + PTRELA QV  +   L    G+ VA  +GG  +  +  +L    H
Sbjct: 136 ---SKVPYLSVLVMVPTRELAQQVTAQFVMLGHSVGLRVATLVGGADMVDQACELSKRPH 192

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VVGTPGR+ DH++      +  L A+VLDEAD+MLD+ +  +I+ IL+  P  R+ ++F
Sbjct: 193 VVVGTPGRIKDHLQNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEHLPHSRQTMLF 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I  L K    D V + +  +N     +    V    +   + +   L      
Sbjct: 253 SATLNTKIDRLQKASLNDPVLLEVHRKNTTVDTLKQYYVFCPFAQMLSYLHLYLTRETGN 312

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC + A V R T  L     Q + L G + Q  R+ AL   ++G+ R+ + TDVA 
Sbjct: 313 HILVFCRSAALVHRITLTLRILGHQALPLMGRMDQTNRNIALTKFKEGKIRILVCTDVAQ 372

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+   ++V++  L    E+ +HR GRT RAG +G +V +I Q      +R+     V
Sbjct: 373 RGLDISHTDVVVNYALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDILLLQRIEATTGV 432

Query: 366 SVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRI 423
                P      ++E D   +LQ  +    ++I+   +   +    K   + + A   + 
Sbjct: 433 KCEEWP------VQEGDVAAVLQRVEDAEQETIKEIRENEQESKFEKEVRQLVTAKRGKR 486

Query: 424 HRA-GLCAPEEITPVSLVSGRDRFRDDSRA 452
            R  G    ++     +     R R ++ A
Sbjct: 487 GRGEGDMGYDDSKHGKVDFATLRLRRENEA 516


>gi|264681499|ref|NP_001161137.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
 gi|261263564|gb|ACX55119.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked [Rattus
           norvegicus]
          Length = 652

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 185/389 (47%), Gaps = 25/389 (6%)

Query: 5   ENIP-----QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           EN       ++I   +    Y   T VQ+  +     ++D++  AQTGSG T AF L + 
Sbjct: 173 ENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLLPIL 232

Query: 60  STLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
           S +  +    +                P++L +APTRELAVQ+  E      ++ V   V
Sbjct: 233 SQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCV 292

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG    ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF  
Sbjct: 293 VYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 352

Query: 168 DIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I++            +MFSAT    I  LA+++  + + + +        +I  + 
Sbjct: 353 QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKV 412

Query: 224 VLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
           V V   D+ + ++++          +VF  T+         L +  +   ++ G+ SQ++
Sbjct: 413 VWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKD 472

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G
Sbjct: 473 REEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG 532

Query: 343 MSVFVIPQ---NMQRRAERLFREANVSVV 368
           ++     +   N+ +    L  EA   V 
Sbjct: 533 LATSFFNERNLNITKDLLDLLVEAKQEVP 561


>gi|226510036|ref|NP_001147911.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195614524|gb|ACG29092.1| ATP-dependent RNA helicase DDX23 [Zea mays]
          Length = 736

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 325 ELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 384

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  I
Sbjct: 385 EENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEI 444

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 +
Sbjct: 445 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 504

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S+
Sbjct: 505 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESE 564

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   
Sbjct: 565 KMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGF 624

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 625 RNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVATSFLTY 684

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 685 ENTDIFFDLKQMLMQSNSPVPPE 707


>gi|332834196|ref|XP_003312635.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Pan troglodytes]
          Length = 715

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 239/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 533

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 534 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 591

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 592 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 635

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 636 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 684


>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
 gi|75325214|sp|Q6YS30|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
 gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
          Length = 512

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 190/387 (49%), Gaps = 11/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +P  + +     G+   + +Q       L  +D +  A TGSGKT+AFG+     +  + 
Sbjct: 101 LPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKM 158

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++ +    P  L ++PTRELA Q+   L    A  G+      GG S   +   L++G 
Sbjct: 159 GEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGV 218

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+ +MF
Sbjct: 219 DIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMF 278

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-----VNILR 240
           SAT  PA+  LA+ +        +       ++ D   ++  L DR         ++   
Sbjct: 279 SATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYH 338

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF   +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IA
Sbjct: 339 KAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIA 398

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  +  A  L 
Sbjct: 399 TDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELV 458

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQ 384
              REA   V          ++++++Q
Sbjct: 459 NVLREAGQVVPPALTKFGTHVKKKESQ 485


>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase domain-containing protein [Dyadobacter
           fermentans DSM 18053]
 gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
           18053]
          Length = 385

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 182/366 (49%), Gaps = 3/366 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + ++E+ Y     +Q+A +   L+  DVL  A+TGSGKT +F L +  +   + 
Sbjct: 13  LSEPLLKTIAEQNYTQPYPIQQAAIPAILKGNDVLGIAKTGSGKTASFVLPILES--FQK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
              +      AL + PTRELAVQ+G   +    +    V        V    + +     
Sbjct: 71  MPPAKNRHITALVLVPTRELAVQIGSVFQIFSERLPRKVKTLAVFGGVSINPQMIALQNV 130

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL + +  K L+++  + +VLDEAD+ML++GF D++  I    PKKR+ ++F
Sbjct: 131 EILVATPGRLLELLSYKALSLAETRILVLDEADKMLNMGFADEMRDIFFLLPKKRQSILF 190

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  + K+  K  VR+ I  E +    I      V    +   +  +++    K
Sbjct: 191 SATLGDEVDKINKDQLKSPVRIEIEEEEQNLDLIKQTGYFVDPDRKGPLLRYLIKSQQMK 250

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S   +     + L ++    +A+  + SQ  R+ AL   + G+  V +ATD+A+
Sbjct: 251 QVLVFVSATRTADNLVEKLKKNGIDAMAMHSKKSQGARTEALNKFKSGKLTVLVATDLAS 310

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ EL  +P++ +HR GRTGRA   G ++ +I        + + ++   
Sbjct: 311 RGIDIQFLPYVINFELPRSPKDYVHRIGRTGRAENPGEAISLICPEDVHHFKIIQKKMGK 370

Query: 366 SVVWEP 371
            V    
Sbjct: 371 KVEMME 376


>gi|46124943|ref|XP_387025.1| hypothetical protein FG06849.1 [Gibberella zeae PH-1]
 gi|91207408|sp|Q4I7F9|PRP28_GIBZE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 721

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/417 (26%), Positives = 188/417 (45%), Gaps = 32/417 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            N+PQ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 293 SNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISD 352

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   D  +    P AL +APTREL  Q+  E        G  V   +GG  +  +  +L+
Sbjct: 353 LPPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGGHQIEEQAYNLR 412

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GA IVV TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 413 DGAEIVVATPGRLLDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDALPVTNEK 472

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------- 216
                  +  I       +    +  + +                               
Sbjct: 473 PDTDEAENAQIMQRYLGGRDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGNAGEAVD 532

Query: 217 -SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
             +     V      +      +   +     IVF + + +     + + +  +  V L 
Sbjct: 533 TVEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGWSAVTLH 592

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 593 GSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 652

Query: 336 GRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           GRAG+ G+++  +           +++  ++++S V E     EA + +  +   +D
Sbjct: 653 GRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKVPEELRRHEAAQSKPVRGAKKD 709


>gi|260904108|ref|ZP_05912430.1| DNA/RNA helicase, superfamily II [Brevibacterium linens BL2]
          Length = 489

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 191/373 (51%), Gaps = 20/373 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I  AL+ +G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L   ++ +N+  
Sbjct: 16  PIVAALAAKGITHPFPIQAMTLPVALSGADIIGQAKTGTGKTLGFGIPLLQRVVGKNEDG 75

Query: 70  ----------------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
                           +    P AL + PTRELA QV  +L     +  + +    GG+ 
Sbjct: 76  AAPADPENTPEFVSDSTETRLPQALVVVPTRELAKQVAADLVTASTQRDIDIMTIYGGMD 135

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + + L++G  +VVGTPGRL D    K L +  ++ VVLDEADEMLDLGF  D+E I+
Sbjct: 136 FDPQIKKLKSGVDVVVGTPGRLLDLYGRKVLRLHKVRTVVLDEADEMLDLGFLPDVEKII 195

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---SDIDYRAVLVALSD 230
           ++ P  R+ ++FSAT+  A+ TLA+ Y      +             + +         D
Sbjct: 196 NAVPAHRQTMLFSATMPGAVITLARRYMSRPTHIRAHDNEDLSLLGKNTEQLVYRAHSMD 255

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  +L+  G    I+F  T+ +  +    L +  FQV  L G+L Q +R  AL+  
Sbjct: 256 KSELVARMLQAEGRGRTIIFTRTKRTADKLAAELGDRGFQVKPLHGDLGQAQREKALKSF 315

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G+  V +ATDVAARGID+ D+  V++ +   + +  +HR GRTGRAG  G++V ++  
Sbjct: 316 REGQVDVLVATDVAARGIDIDDVTHVVNYQCPDDEKTYVHRIGRTGRAGNTGIAVTLVDW 375

Query: 351 NMQRRAERLFREA 363
           +   R  RL  +A
Sbjct: 376 DDMPR-WRLINKA 387


>gi|307708913|ref|ZP_07645373.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
 gi|307620249|gb|EFN99365.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
          Length = 447

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFTTPTEVQDKLIPIVLVGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQAARQIAAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRTENRARGRAERKAKR 444


>gi|301755880|ref|XP_002913778.1| PREDICTED: nucleolar RNA helicase 2-like [Ailuropoda melanoleuca]
          Length = 794

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 241/582 (41%), Gaps = 40/582 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 190 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 249

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 250 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLA--VACFYGGTPYGGQIERM 307

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 308 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 367

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 368 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 427

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++ ++          G++ Q++R   L+  R
Sbjct: 428 VIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLH-GDIPQKQREITLKGFR 486

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 546

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 547 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAVSHFKQSAEKL 603

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F                       S+
Sbjct: 604 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF----------------VTMILRCSI 647

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF-VEVSADGVDLLRRTVKLDKG 530
            + +      + L   L     I+ +  G + ++       +V    V  ++      + 
Sbjct: 648 EMPNIS-YAWKELKEQLSE--DIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEKWHDSRR 704

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            QL     E+P+  G +  GF+    Q   ++ F+  +  S+
Sbjct: 705 WQLSVAT-EQPELEGPR-EGFRGFRGQREGSRGFRGQREGSR 744


>gi|228965117|ref|ZP_04126213.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794550|gb|EEM42060.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 389

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I     +        +        N  V  + + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|224124820|ref|XP_002319430.1| predicted protein [Populus trichocarpa]
 gi|222857806|gb|EEE95353.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 190/373 (50%), Gaps = 13/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  + Q I + ++   Y   TS+Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 114 IESFEDMCLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPM 173

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               LA+         PLAL +APTRELA Q+ +E++           A+ +GG ++  +
Sbjct: 174 IQHCLAQ-PTVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQ 232

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R +L+ G  ++V TPGRL DH++    ++S +  +VLDEAD MLD+GF   I  ++ + P
Sbjct: 233 RLELRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLP 292

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K + L+FSAT+   I TL + Y    V+V +   +   +++      V+ S++ + ++ 
Sbjct: 293 EKHQTLLFSATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLA 352

Query: 238 ---------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                              IVF   +   +   + L     Q VAL G  SQ +R  AL+
Sbjct: 353 LLVEDASQAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSDREAALR 412

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +    
Sbjct: 413 DFRSGSTSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFY 472

Query: 349 PQNMQRRAERLFR 361
                    ++ +
Sbjct: 473 TDQDLFLVAQIKK 485


>gi|30062866|ref|NP_837037.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 2457T]
 gi|56479969|ref|NP_707684.2| ATP-dependent RNA helicase DbpA [Shigella flexneri 2a str. 301]
 gi|110805760|ref|YP_689280.1| ATP-dependent RNA helicase DbpA [Shigella flexneri 5 str. 8401]
 gi|30041114|gb|AAP16844.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|56383520|gb|AAN43391.2| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|110615308|gb|ABF03975.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|281601230|gb|ADA74214.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|313650581|gb|EFS14984.1| ATP-independent RNA helicase dbpA [Shigella flexneri 2a str. 2457T]
 gi|332757684|gb|EGJ88015.1| ATP-independent RNA helicase dbpA [Shigella flexneri 4343-70]
 gi|333004752|gb|EGK24274.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-218]
 gi|333018569|gb|EGK37863.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-304]
          Length = 455

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 195/388 (50%), Gaps = 13/388 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E      ALS     ++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVEQ--SALSLHGDLEQRDQTLVRFANGSAR 291

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 292 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 351

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 352 NIISDMLQIKLNWQTPPANSSIVTLEAE 379



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 318 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 377

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 378 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 437

Query: 524 TVKLDK 529
            ++  K
Sbjct: 438 QLQGGK 443


>gi|333004456|gb|EGK23986.1| ATP-independent RNA helicase dbpA [Shigella flexneri VA-6]
          Length = 455

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 132/388 (34%), Positives = 196/388 (50%), Gaps = 13/388 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +     LAL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTLALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +             +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E      ALS     ++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVEQ--SALSLHGDLEQRDQTLVRFANGSAR 291

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 292 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 351

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 352 NIISDMLQIKLNWQTPPANSSIVTLEAE 379



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 318 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 377

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 378 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 437

Query: 524 TVKLDK 529
            ++  K
Sbjct: 438 QLQGGK 443


>gi|281346961|gb|EFB22545.1| hypothetical protein PANDA_001614 [Ailuropoda melanoleuca]
          Length = 765

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/582 (24%), Positives = 241/582 (41%), Gaps = 40/582 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 161 FSNFPISEPTIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 220

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 221 LQGEMQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLA--VACFYGGTPYGGQIERM 278

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 279 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 338

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 339 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 398

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++ ++          G++ Q++R   L+  R
Sbjct: 399 VIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIKQDAQSLH-GDIPQKQREITLKGFR 457

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 458 NGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 517

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 518 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAVSHFKQSAEKL 574

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F                       S+
Sbjct: 575 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF----------------VTMILRCSI 618

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTF-VEVSADGVDLLRRTVKLDKG 530
            + +      + L   L     I+ +  G + ++       +V    V  ++      + 
Sbjct: 619 EMPNIS-YAWKELKEQLSE--DIDSKVKGMVFLKGKQGVCFDVPTAAVTEIQEKWHDSRR 675

Query: 531 IQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
            QL     E+P+  G +  GF+    Q   ++ F+  +  S+
Sbjct: 676 WQLSVAT-EQPELEGPR-EGFRGFRGQREGSRGFRGQREGSR 715


>gi|195403478|ref|XP_002060316.1| GJ16043 [Drosophila virilis]
 gi|194140655|gb|EDW57129.1| GJ16043 [Drosophila virilis]
          Length = 605

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/381 (29%), Positives = 177/381 (46%), Gaps = 12/381 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    P+     +  + Y+  T +Q       +   +++  A+TGSGKT+AF L  
Sbjct: 120 IQCFDEACFPEYCMNEIRRQRYIEPTPIQAQSWPIVMSGNNLVGIAKTGSGKTLAFILPA 179

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+        + + V      GG    ++ 
Sbjct: 180 IVHIRGQAP-LERGGGPIALVLAPTRELAQQIQSVANDFGSSSSVRNTCIFGGSPRTKQA 238

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DLQ G  IV+ TPGRL D ++    N+     +VLDEAD M+D+GF   I  I      
Sbjct: 239 SDLQRGVEIVIATPGRLLDFLQAGTTNLRRCTYLVLDEADRMMDMGFEPQIRKIFGQIRP 298

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------RD 232
            R+ LM+SAT    +  LA+++  + + +NI S     +    + V V          +D
Sbjct: 299 DRQTLMWSATWPKEVRQLAEDFLGNYIHINIGSMELSANHNIRQYVEVCAEHEKGAKLKD 358

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                  +       I+F +T+  V +  + +      V ++ G+ SQ +R N L   R 
Sbjct: 359 LLSHIYDQAAMPGKIIIFVATKKKVDKLARFINALGVSVGSIHGDKSQMDRDNVLNDFRS 418

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           GRA + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRTGR    G S     +  
Sbjct: 419 GRANILVATDVAARGLDIDGIKYVINFDFPQSSEDYIHRIGRTGRNRSTGTSYAFFTRKN 478

Query: 353 ---QRRAERLFREANVSVVWE 370
               R    + REAN  V  E
Sbjct: 479 AKCARALIEVLREANQIVNPE 499


>gi|332202625|gb|EGJ16694.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
           GA41317]
          Length = 461

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/425 (26%), Positives = 194/425 (45%), Gaps = 30/425 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I  G 
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMI--GL 400

Query: 421 LRIHR 425
           ++  R
Sbjct: 401 VKKKR 405


>gi|225443496|ref|XP_002270644.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 709

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 196/386 (50%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 296 LSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 355

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 356 PISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 415

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 416 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 475

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V 
Sbjct: 476 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVK 535

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L
Sbjct: 536 GSEKMPKLQKLLDELGDKTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISL 595

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 596 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 655

Query: 348 IPQNMQ---RRAERLFREANVSVVWE 370
           +  +        +++  ++N  V  E
Sbjct: 656 LTLHDSDVFYDLKQMLIQSNSPVPPE 681


>gi|298485798|ref|ZP_07003877.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159824|gb|EFI00866.1| ATP-dependent RNA helicase RhlB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 484

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 161 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 220

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 221 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 280

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 281 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 341 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 401 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 460

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 461 KLGRKISCETPPT 473


>gi|29833596|ref|NP_828230.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29610720|dbj|BAC74765.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 498

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL       
Sbjct: 63  DLPAELLKTLTSLGVNEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLVR---T 119

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 120 AGQRAEARKPLALILVPTRELAQQVTDALTPYAQLLKLRLATVVGGMSIGRQASALRAGA 179

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I  K   +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 180 EVVVATPGRLADLIERKDCRLDRVSITVLDEADQMADMGFMPQVTELLDQVRPDGQRMLF 239

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 240 SATLDRNIDLLVRRYLHDPVVHSVDPSAGTVTTMEHHVLHVHGTDKFATATE--IAARDG 297

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V +FTK L     +  AL G  SQ +R+  L   R G     +AT+VAA
Sbjct: 298 RVLMFLDTKHAVDQFTKHLLGSGVKAAALHGGKSQPQRTRTLAQFRTGDITALVATNVAA 357

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 358 RGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMARLMSDAGI 417

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P +  +R  +A+
Sbjct: 418 R------PQITQVRSGEAE 430


>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
 gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           LGP32]
          Length = 447

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 70  TKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPR 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 130 FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S  +         +   L  ++  +  ++    
Sbjct: 190 SATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +TRA   R T+ L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+P++  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 310 ASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVELYL 369

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 370 QQDLTFSVLEGLK 382


>gi|149007640|ref|ZP_01831257.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
 gi|147760795|gb|EDK67766.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74]
          Length = 412

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 190/416 (45%), Gaps = 28/416 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +   + + + P             ++++D  F D+   D +   +    K D E I
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMI 398


>gi|54301879|ref|YP_131872.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
 gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
          Length = 455

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 193/406 (47%), Gaps = 7/406 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L +   L  +    
Sbjct: 45  PLLARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPMLQHLFLQQHLS 104

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV   ++         +      GGVS + +   L+ G
Sbjct: 105 SKSSKGNYVTRLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGG 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF D++  +L   PK ++ L+
Sbjct: 165 TDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLGLLPKNKQTLL 224

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL +    D V + + S +        R   V   ++   + ++++ +  
Sbjct: 225 FSATFPEQVQTLTQELLNDPVEIQLQSADASTL--VQRVFTVNKGEKTALLAHLIKQNEW 282

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L++         G+  Q  R+  L   + G   V IATD+A
Sbjct: 283 RQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRVLDAFKAGEIEVLIATDIA 342

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I  +     + + ++  
Sbjct: 343 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVIEKKNK 402

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + +  E     EA    +A  I   P+      G +K+     L +
Sbjct: 403 IRLEREQVEGFEADEVNEAFLIANKPMAKPEGSGKKKRKNKASLNE 448


>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 443

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 175/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 66  TKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S  +         +   L  ++  +  ++    
Sbjct: 186 SATLDHAEVNDIANEMLDSPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +TRA   R T+ L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVMIFTATRADTDRLTEKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+P++  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVELYL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 366 QQDLTFSVLEGLK 378


>gi|238784177|ref|ZP_04628190.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
 gi|238714886|gb|EEQ06885.1| ATP-dependent RNA helicase srmB [Yersinia bercovieri ATCC 43970]
          Length = 441

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 203/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRADDIEHKTALLVHLLKQPE 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +    +   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKEPSSKSTGKPSKKVLAKRKELKEASKEKAKVKVRHRDAKNV 425


>gi|251783115|ref|YP_002997418.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391745|dbj|BAH82204.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127866|gb|ADX25163.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 447

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 199/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q I +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYIQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVVTAPSRELATQIFDACKQIAKHSPKDIRLANYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 GQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +E      ID   V     D++  I+ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTETVIADTIDNWLVSTKGRDKNGQILEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLVANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + +V+ P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIVFTP-------------KMLKNGEFQDTYDRDRRQNREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|332534400|ref|ZP_08410240.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036134|gb|EGI72609.1| ATP-dependent RNA helicase DbpA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 462

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 204/368 (55%), Gaps = 7/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + LS  GY ++T VQ   L P L  KD++  A+TGSGKT AF L + + L  + 
Sbjct: 11  LPAGLVDNLSTLGYAHMTPVQAQSLPPVLAGKDIIAQAKTGSGKTAAFSLGVLAKLNVKR 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R        +L + PTRELA QV  E+  L      + +    GGVS+  +   L++GA
Sbjct: 71  FRI------QSLVLCPTRELAEQVAVEMRKLARGIHNIKILTLCGGVSIGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+ DHIR   L +  ++ +VLDEAD+MLD+GF+D ++ I++  P+ R+ L+F
Sbjct: 125 HIIVGTPGRVDDHIRKGTLRLDDVETLVLDEADQMLDMGFQDTLDAIIERIPQNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   AI  +AK   K+   V +  E  + +   Y   +     R   +  +L     +
Sbjct: 185 SATFPRAIEAIAKRVLKNPEMVKVEEEQAKSTIKQYFYKMDNNKQRYPTLKLLLLKFTPQ 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+    +    LA+  F  VAL G+L Q++R   L    +  A + +ATDVAA
Sbjct: 245 SCVVFCNTKVETQQVCDDLADEGFSAVALHGDLEQRDRERTLIHFSNKSASILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ D+++VI+  L+ + +  +HR GRTGRAG+KG++  +  +    +  ++      
Sbjct: 305 RGLDIDDMDMVINYHLAHDTQTHVHRVGRTGRAGKKGIACSIYGEAEAFKIAQIGDHYER 364

Query: 366 SVVWEPAP 373
            +  E  P
Sbjct: 365 DITPEQMP 372



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 16/123 (13%)

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A   +I + G     +ITP  +       +   R                   +  G KQ
Sbjct: 350 AEAFKIAQIGDHYERDITPEQMPPFNLLDKPPYRPE------------MVTLMIDSGKKQ 397

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLLRRTVKLDKGIQL 533
           K  A  ++  L    G+  + +G I V  ++ FV V    S   +  L       + I+ 
Sbjct: 398 KVRAGDILGALTGKDGVAGRQVGKINVLDNVAFVAVERNSSKPALRKLTEGNIKGRKIRA 457

Query: 534 KYL 536
           + L
Sbjct: 458 RRL 460


>gi|77461469|ref|YP_350976.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
 gi|77385472|gb|ABA76985.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf0-1]
          Length = 478

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 210/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 25  FNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 84

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL I PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 85  INP------RYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIGS 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D IE I++ +P +R
Sbjct: 139 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPARR 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA  + +D   V  A      + I+ R   ++  +R +A+  +L 
Sbjct: 199 QTLLFSATYPVGIKQLASKFMRDPQTV-KAEAFHDDTQIEQRFYEISPEERMSAVTKVLH 257

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 258 HFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 317

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +   RA+ + 
Sbjct: 318 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE 377

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + W+   ++++         LQ P+    I G  K  V 
Sbjct: 378 QLQKTPLNWDQVDNLKS----QGGAPLQPPMSTLCIAGGRKDKVR 418



 Score = 64.6 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EV 513
           G        S   ++ G K K     ++  L   +GI    +G I +    ++V     V
Sbjct: 396 GGAPLQPPMSTLCIAGGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQSYVAVERTV 455

Query: 514 SADGVDLLRRTVKLDKGIQLKYL 536
               +  L       + ++++ L
Sbjct: 456 VMQALQRLNNGKIKGRSLRVRVL 478


>gi|1230564|gb|AAB02546.1| Gu protein [Homo sapiens]
          Length = 801

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 239/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 206 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 266 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 323

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 324 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 383

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 384 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 443

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 444 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 502

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 503 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 562

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 563 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 619

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 620 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 677

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 678 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 721

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 722 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 770


>gi|315222026|ref|ZP_07863937.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
 gi|315188992|gb|EFU22696.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
          Length = 447

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 197/468 (42%), Gaps = 26/468 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  +      A +   +  AP+RELA Q+ +    + A +   + V           +
Sbjct: 61  QKLNED------ADSVQVVITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I  S 
Sbjct: 115 IGKLSSSQPHIVIGTPGRIYDLVESGDLVIHKAHTFVVDEADMTLDMGFLMTVDKIASSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I  +      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKIKTVISDTIENWLISTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 KITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             +++++  F D+   D +   +    K D E I
Sbjct: 355 RELEK---LGIHFIP-------------KMIKNGEFQDTYDRDRRANREKTQEKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
                +  +      ++I        R   R ++RA           +
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKRQQ 446


>gi|311031661|ref|ZP_07709751.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
          Length = 435

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 108/397 (27%), Positives = 191/397 (48%), Gaps = 17/397 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   I EA+ E  +   T VQE ++   L  +  +  +QTG+GKT A+ + + 
Sbjct: 3   TTFEKFNVKPFILEAVKELRFQKPTEVQERMIPSLLNGESAIGQSQTGTGKTHAYLIPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVH 115
           S +              A+  APTRELA Q+ +E+    ++   +  +     IGG    
Sbjct: 63  SKIDPS------LQEVQAVITAPTRELANQIYQEVLKITKFCSGEDMITARCYIGGTDKQ 116

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R    L+   HIVVGTPGR+ D +    L +   + +V+DEAD MLD+GF +DI+ +  +
Sbjct: 117 RTIDRLKQQPHIVVGTPGRIKDLMVENALLVHTARTIVVDEADLMLDMGFIEDIDKVAAA 176

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  ++++FSATI   +    + Y ++    ++A +    + I +  + V    +   +
Sbjct: 177 MPKNLQIMVFSATIPEKLKPFLRKYMENPKYTHVAPKQVTAAKIKHLLMPVKSKSKTKLL 236

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L  +    AIVF +T+         L E   +V  + G+L+ +ER   ++ + +   
Sbjct: 237 HDLLVEYNPYLAIVFTNTKKKADEVADALLEQGLKVGRIHGDLNPRERKKMMKQINELEY 296

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RA   G ++ +     +  
Sbjct: 297 QYVVATDLAARGIDIAGVSHVINYELPSDLDFYVHRVGRTARADYSGNAITLYEPTDENA 356

Query: 356 AERLFREANVSVVWEPAPSVEAI----RERDAQRILQ 388
             ++ +   +        + E +    R +   R  Q
Sbjct: 357 LAQIEK-MGIEFTQIDFKNGELVEIGPRNKRQNRKKQ 392


>gi|307167913|gb|EFN61290.1| Probable ATP-dependent RNA helicase DDX49 [Camponotus floridanus]
          Length = 457

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 206/433 (47%), Gaps = 25/433 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     +       G  N T +Q+  +   L  +D +  A+TGSGKT+AF L +
Sbjct: 4   IKDFSDLKLNSWLLAQCDTMGLKNPTLIQQNCIPRILAGEDCIGCAKTGSGKTLAFALPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA Q+  +   +     +   V +GG+ +  + 
Sbjct: 64  LQKLCEDP------YGIFALVLTPTRELAFQIADQFAAIGKAINLKKCVVVGGMDMMVQG 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L    HIVV TPGRL DH+      ++  +K +VLDEAD +L   F   ++ I  + P
Sbjct: 118 LELSKRPHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAAVP 177

Query: 178 KKRRMLMFSATISP--AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           K++++L+FSAT++          + +         +      ++D R VL      D+ +
Sbjct: 178 KQKQVLLFSATMTDALDKVKQIASSKVFIWEEEDDAGIATVRELDQRYVLCPKDVLDSFL 237

Query: 236 VNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V ++R   A N     ++F  T       + +L +  F  +AL   + Q+ER  AL   +
Sbjct: 238 VEVIRTFRATNKNGSIMIFTDTCKHCQLLSMMLNDVGFTNMALHAMIKQKERLAALSKFK 297

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
               ++ IATDVAARG+D+P +ELV++  + + P+  +HR GRT RAGR GM++ +I  N
Sbjct: 298 SNHVQILIATDVAARGLDIPTVELVVNHIIPNVPKEYIHRVGRTARAGRNGMAISLITPN 357

Query: 352 MQRRAERLFREANVSVVWEPAPSVE--------AIRERDAQRILQDPLFLDSIQGDEKKM 403
             +    +       +        E        ++ +R+A+  L +  F +    +++K 
Sbjct: 358 DIKLLHMIEDTIGTKLTEYKVDDKEIVTILTQISVAKREAEIRLDETDFYEKKMINKRK- 416

Query: 404 VDVLLAKHDPEKI 416
             ++L   DP++I
Sbjct: 417 -KLILEGKDPDEI 428


>gi|257487412|ref|ZP_05641453.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|320325825|gb|EFW81886.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327257|gb|EFW83271.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879451|gb|EGH13600.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330988315|gb|EGH86418.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 482

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 158

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 159 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 218

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 219 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 278

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 279 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 338

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 339 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 399 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 458

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 459 KLGRKISCETPPT 471


>gi|167389793|ref|XP_001739087.1| ATP-dependent RNA helicase FAL1 [Entamoeba dispar SAW760]
 gi|165897365|gb|EDR24551.1| ATP-dependent RNA helicase FAL1, putative [Entamoeba dispar SAW760]
          Length = 384

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 192/378 (50%), Gaps = 9/378 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE+  + + + + + ++GY   + +Q+  + P  + KDV+  +Q+G+GKT  F + + 
Sbjct: 12  ETFESMGLKEELLKGIYQQGYNKPSGIQQRGIVPITKGKDVIAQSQSGTGKTATFSIGIL 71

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       S       + I+PTRELA+Q  R +  L     + V  CIGG S   + +
Sbjct: 72  QNVE------SNKREVQVIIISPTRELAIQSERVISGLSQYMAIQVRGCIGGKSEKEDIK 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  ++ GTPGR+   I+ + +N+ H+K +V+DEADEM + GF + I  I+   P K
Sbjct: 126 AIEKGCQVISGTPGRIMGLIKKRVINVRHIKTLVIDEADEMFNKGFMEIIYDIIKYLPIK 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
           R++++ SAT++  +  +        + + I        +I    + +     + + +  I
Sbjct: 186 RQIVLCSATLTGDVIEIGTKIMNKPIEILIKRNEITVEEIKQYFIEIEKEEQKFDTLCEI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +++FC+ +  V   T+ + +  F V+++  E+ QQER   + + R G  RV 
Sbjct: 246 YDSMTITQSVIFCNMKKKVDWLTENMMKANFPVISMHSEMPQQERDYIMNIFRKGEKRVL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDV ARGID+  + LVI+ ++  N E  +HR GR+GR GR G+++  + +N       
Sbjct: 306 ITTDVWARGIDVTQISLVINYDMPLNREVYIHRIGRSGRFGRTGIAINFVLKNEMDNLRD 365

Query: 359 LFREANVSVVWEPAPSVE 376
           L R  +  +   P    E
Sbjct: 366 LERYYSTQINELPENFAE 383


>gi|145257496|ref|XP_001401758.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           niger CBS 513.88]
 gi|143359821|sp|A2QIL2|PRP28_ASPNC RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|134058672|emb|CAK38656.1| unnamed protein product [Aspergillus niger]
          Length = 810

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 115/418 (27%), Positives = 198/418 (47%), Gaps = 37/418 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++  N+P+ + E ++  GY   T +Q A +   ++ +D++  A TGSGKT AF L L
Sbjct: 371 MRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPL 430

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +  A  P A+ +APTRELA Q+  E +      G  V   +GG S+
Sbjct: 431 LCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSL 490

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 491 EEQAYSLRDGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILD 550

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------ 216
           + P            +P   +   N+ +   R  +                         
Sbjct: 551 ALPVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMYTATMPTAVERIARKYLRRPAIVT 610

Query: 217 --------SDIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAE 266
                     ++ R  ++A  D+    +  +   G   A  IVF + + +     + + +
Sbjct: 611 IGSAGEAVDTVEQRVEMIAGEDKRKKRLGDILSSGEFRAPIIVFVNIKRNCDAIAREIKQ 670

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F  V L G  +Q +R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E
Sbjct: 671 WGFSSVTLHGSKTQDQREAALASVRNGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIE 730

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           +  HR GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 731 SYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSK 788


>gi|291225666|ref|XP_002732826.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23-like
           [Saccoglossus kowalevskii]
          Length = 768

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 188/381 (49%), Gaps = 28/381 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P  I + +   GY   T +Q   +   L+ +DV+  A+TGSGKT AF + L    S+L 
Sbjct: 346 LPDYIIDVIDSMGYKEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVWISSLP 405

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 406 KIARQEDVDQGPYAVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQGFKLRM 465

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------- 176
           G  IV+ TPGRL D +  + L ++    VVLDEAD M+D+GF  D++ IL+         
Sbjct: 466 GCEIVIATPGRLIDVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLPVSNQKP 525

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ P +  +A+NY +    V+I S  +    
Sbjct: 526 DTDDAEDHDKLLANFASKHKYRQTVMFTATMPPPVERIARNYLRRPAVVHIGSVGKPVDR 585

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V   ++   +V++L        + F + +       K L +  +    L G  
Sbjct: 586 VEQVVYMVKQQEKRQKLVHLLEAGFEPPVMTFVNQKKGCDVLAKSLEKMGYNATTLHGGK 645

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  AL  +++G   + + TDVA RGID+ D+ +VI+ +++ N E+  HR GRTGRA
Sbjct: 646 SQEQREFALASLKNGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYTHRIGRTGRA 705

Query: 339 GRKGMSVFVIPQNMQRRAERL 359
           G+ G++V ++  + +     L
Sbjct: 706 GKTGLAVSLVTPDDKMVMYDL 726


>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
 gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
          Length = 560

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/417 (26%), Positives = 196/417 (47%), Gaps = 12/417 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE     +   +A+ + G+  +T VQ   + P L  +DVL +A+TGSGKT+AF L     
Sbjct: 98  FEEAGFSEPTLKAIRQMGFKKMTKVQAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAIEL 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   + +F P +    + I+PTRELA+Q+      L         + IGG +  +E   L
Sbjct: 158 LY--SLKFKPRNGTGVVIISPTRELALQIFGVARELMEHHTQTFGIVIGGANRRQEADKL 215

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G ++++ TPGRL DH++        +LKA+V+DEAD +L++GF ++++ I+   P + 
Sbjct: 216 VKGVNLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEEMKQIIKILPNED 275

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R  M  +            ++       + V   S       ++   V+     R   + 
Sbjct: 276 RQSMLFSATQTTKVEDLARMSLRPGPLYINVVPESAASTADGLEQGYVVCESDKRFLLLF 335

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L+ +  K  IVF S+   V  F ++L      V+ L G+  Q +R+N      + +  
Sbjct: 336 SFLKRNAKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQAKRTNTFFEFCNAKQG 395

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRR 355
           + I TDVAARG+D+P ++ ++  +   +P + +HR GRT R  + KG S+  +  +    
Sbjct: 396 ILICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGKGKSLMFLTPSELGF 455

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R  + ANV +     P+ + A  +    ++++   +L     D  +      A H
Sbjct: 456 L-RYLKAANVPLNEYEFPANKIANVQSQLTKLIKSNFWLHQSAKDGYRSYLQAYASH 511


>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
          Length = 447

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/400 (26%), Positives = 180/400 (45%), Gaps = 8/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+    
Sbjct: 70  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I        ++  M 
Sbjct: 130 FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 190 SATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 310 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYL 369

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              + +     ++   +    R    P F +     +K  
Sbjct: 370 QQDLNFSVFEDLKGKFKGLKPR---KPDFRNKKTETKKAR 406


>gi|153831607|ref|ZP_01984274.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
 gi|148872117|gb|EDL70934.1| ATP-dependent rna helicase, dead box family [Vibrio harveyi HY01]
          Length = 443

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/400 (26%), Positives = 180/400 (45%), Gaps = 8/400 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+    
Sbjct: 66  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGGENFNDQVKALRRYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I        ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 186 SATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 306 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYL 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              + +     ++   +    R    P F +     +K  
Sbjct: 366 QQDLNFSVFEDLKGKFKGLKPR---KPDFRNKKTETKKAR 402


>gi|148706200|gb|EDL38147.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked, isoform CRA_a
           [Mus musculus]
          Length = 639

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 192/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F +I   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 159 IENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 218

Query: 59  ASTLLAENDRFS------------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +  +    +                P++L +APTRELAVQ+  E      ++ V   
Sbjct: 219 LSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 278

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG    ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 279 VVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 338

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 339 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 398

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V   D+ + ++++L   G  +  +VF  T+         L +  +   ++ G+ SQ+
Sbjct: 399 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 458

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R GR  + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 459 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 518

Query: 342 GMSVFVIPQ---NMQRRAERLFREANVSVV 368
           G++     +   N+ +    L  EA   V 
Sbjct: 519 GLATSFFNERNLNITKDLLDLLVEAKQEVP 548


>gi|66820759|ref|XP_643949.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
 gi|74927179|sp|Q86IZ9|DDX52_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx52; AltName:
           Full=DEAD box protein 52
 gi|60472102|gb|EAL70055.1| hypothetical protein DDB_G0274325 [Dictyostelium discoideum AX4]
          Length = 668

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 166/374 (44%), Gaps = 13/374 (3%)

Query: 1   MKIFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           M  F  +       + +   ++E GY   + +Q  ++   L+E++V+  A TGSGKT +F
Sbjct: 194 MTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASF 253

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L              ++ IAPTRELA Q+ R    L       + V    +  
Sbjct: 254 SIPILQALYE-----PKKEGFRSVIIAPTRELAQQIYRNFRLLSKGKPFRICVLSKNLHN 308

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
                +L     I++ TP RL   I+   L+++ ++ +V DEAD++ D  F++ ++ ++ 
Sbjct: 309 QSTNENLIKNYDILITTPLRLVYLIKENLLSLNKVEYLVFDEADKLFDKNFQEQVDIVVT 368

Query: 175 SSPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
           +    +  +  FSAT++  +  L  +  K+ +++ I  +N     +D +   +     + 
Sbjct: 369 ACQNPKLKICLFSATMNQQVEELGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKL 428

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+  +++       ++F  ++       + L      V  +  E +Q +R   ++  R 
Sbjct: 429 LAVRQLIQKGLEPPILIFTQSKERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRM 488

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V I T++ ARG+D   +  VI+ +      + +HR GRTGRAGR G++  +     
Sbjct: 489 GKIWVLICTELMARGMDFKGVNFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDAD 548

Query: 353 QRRAERLFREANVS 366
                 +      S
Sbjct: 549 TPMLPTIVHAMKQS 562


>gi|329939625|ref|ZP_08288926.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329301195|gb|EGG45090.1| putative ATP-dependent RNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 848

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 128/369 (34%), Positives = 192/369 (52%), Gaps = 11/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G +N   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 50  LPET-AEALEAVGILNPFPIQEMTLPVALSGSDVIGQAKTGTGKTLGFGLPLLERVSVPA 108

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P    + P AL + PTREL VQV  +L        V V    GG +   +  
Sbjct: 109 DVEAGRARPEDVTNTPQALVVVPTRELCVQVTNDLLTAGKVRNVRVTAIYGGRAYEPQVE 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D    K LN++H++ +VLDEADEMLDLGF  D+E I+   P +
Sbjct: 169 ALKKGVDVVVGTPGRLLDLAGQKKLNLAHVRCLVLDEADEMLDLGFLPDVEKIIGMLPAR 228

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+  A+ +LA+ Y      +   S   +     +I          D+   I 
Sbjct: 229 RQTMLFSATMPGAVISLARRYMSQPTHIRATSPEGEGVTLANIKQFVYRAHSMDKPEMIA 288

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+  G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 289 RILQAEGRGLAMIFCRTKRTAADIAEQLQQRGFASGAVHGDLGQGAREQALRAFRNGKVD 348

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +   + +  LHR+GRTGRAG  G ++  +  +   R 
Sbjct: 349 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRTGRTGRAGASGTAITFVDWDDIPRW 408

Query: 357 ERLFREANV 365
           + + +   +
Sbjct: 409 QLINKALGL 417


>gi|256823808|ref|YP_003147771.1| DEAD/DEAH box helicase domain-containing protein [Kangiella
           koreensis DSM 16069]
 gi|256797347|gb|ACV28003.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
           16069]
          Length = 420

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 191/371 (51%), Gaps = 3/371 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+++ G+   T +Q   L   L+ ++V   AQTG+GKT+AF LA+ + +L   
Sbjct: 16  LDPKLLKAVADLGFEYCTPIQAKSLPLLLKGQNVAGQAQTGTGKTIAFLLAIMNDILTLP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +      + P +L +APTRELAVQ+ ++   L   T + + V  GG    ++R+ L +G 
Sbjct: 76  EIEGRRKNEPRSLIMAPTRELAVQIAKDAVQLAKHTDLKIRVVYGGEDHEKQRQQLIDGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ + K   +  + +VVLDEAD M DLGF  DI ++ +  P    R  +
Sbjct: 136 DILIGTTGRLIDYFKTKAFGLEAIDSVVLDEADRMFDLGFIKDIRYLFNRMPPATDRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  +  +   V + ++    + I       +  +    +V +++   
Sbjct: 196 LFSATLSHRVQELAYEHMNNPQHVQVQTQQVSANKIREALFYPSREEALPLLVGLMQRLE 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +IVF +T+ +       LA +  +   L+G++ Q++R   L  +++    V + TDV
Sbjct: 256 PEKSIVFTNTKRAAEHVWACLAGNDIKAGLLTGDVHQKKRLRLLDELKNDDVSVLVCTDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +  +  V +  L  + E+ +HR GRT RAG +G ++    ++       + +  
Sbjct: 316 AARGLHIDGVTHVFNYHLPDDAEDYVHRIGRTARAGAEGDAISFAGEDFAMNLTAIEQYV 375

Query: 364 NVSVVWEPAPS 374
             ++      S
Sbjct: 376 GHNLPKLEIKS 386


>gi|309360868|emb|CAP30554.2| hypothetical protein CBG_11408 [Caenorhabditis briggsae AF16]
          Length = 559

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 177/370 (47%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L  + +   T +Q       +  +D++  A+TGSGKT+AF L     +  + 
Sbjct: 137 LPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQP 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV           G+ +    GG S   + RDL+ G  
Sbjct: 196 HR-QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 255 IAVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRDNAIVNILRYH 242
           AT    + +LA ++QKDA  +N+ S     +    +        A   +   ++N +   
Sbjct: 315 ATWPKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQ 374

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATD
Sbjct: 375 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATD 434

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+ D++ VI+ +  +N E+ +HR GRTGR  +KG +          +A+ L + 
Sbjct: 435 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAKDLLKV 494

Query: 362 --EANVSVVW 369
             EA  +V  
Sbjct: 495 LDEAKQNVPQ 504


>gi|50659095|ref|NP_004719.2| nucleolar RNA helicase 2 [Homo sapiens]
 gi|76803555|sp|Q9NR30|DDX21_HUMAN RecName: Full=Nucleolar RNA helicase 2; AltName: Full=DEAD box
           protein 21; AltName: Full=Gu-alpha; AltName:
           Full=Nucleolar RNA helicase Gu; AltName: Full=Nucleolar
           RNA helicase II; AltName: Full=RH II/Gu
 gi|31455230|gb|AAH08071.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|55664208|emb|CAH72377.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapiens]
 gi|119574691|gb|EAW54306.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_b [Homo
           sapiens]
 gi|261858100|dbj|BAI45572.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
          Length = 783

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 239/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 601

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 602 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 659

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 660 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 703

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 704 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752


>gi|302804021|ref|XP_002983763.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
 gi|300148600|gb|EFJ15259.1| hypothetical protein SELMODRAFT_268770 [Selaginella moellendorffii]
          Length = 418

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/407 (28%), Positives = 194/407 (47%), Gaps = 20/407 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + +  A  E G  + T VQ A +   L+ KDVL  AQTGSGKT AF L +   L      
Sbjct: 11  EWLVGACKELGMRHPTPVQRACVPQILKGKDVLGMAQTGSGKTAAFALPILQRLGENP-- 68

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA Q+  + + L A   +  AV +GG+ +  + + L    H+V
Sbjct: 69  ----YGIFALVMTPTRELAFQISDQFKALGAGVHLRCAVVVGGMDMTTQAQILTERPHVV 124

Query: 129 VGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           + TPGR+  H+          S  K +VLDEAD +LD GF+D+++ I D   K+R+ L+F
Sbjct: 125 IATPGRIKAHLGSDPDIAAAFSKTKFLVLDEADLLLDRGFQDELQTIFDGISKQRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYH 242
           SAT++  +  L   +   A         +    +D R + +    ++     ++  L   
Sbjct: 185 SATMTGDLQALRDLFGHRAFFYQAYEGLKTVESLDQRYIFMPGKVKNVYLTYLLENLELG 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ I+F S   +    + +L E     VAL    +Q +R  AL   + G+A + IATD
Sbjct: 245 DIRSVIIFVSRCRTCHLLSLILDELGISAVALHSVKTQPQRLAALNQFKSGQATILIATD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA+RG+D+P ++LV++ ++    ++ +HR GRT RAGR G ++ ++ +        +   
Sbjct: 305 VASRGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTELDVELVHEVESF 364

Query: 363 ANVSVVWEPAPSVEAIR--------ERDAQRILQDPLFLDSIQGDEK 401
               +        + ++        +R A   ++D    + +   +K
Sbjct: 365 LGKKLEEYEVSESDVLKNITKVYKAKRVAIMKMEDSGIQEKMDARKK 411


>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
 gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
          Length = 598

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 176/361 (48%), Gaps = 9/361 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +      I +AL E G     ++QE  L   +   D++  A+TG GKT+ FG+ L  
Sbjct: 75  TFASFGVKPEIVKALGEAGIERTFAIQELTLPLAMAGDDLIGQARTGMGKTLGFGVPLLH 134

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    D       P  L + PTREL +QV  +L+      G+      GG     +   
Sbjct: 135 RVQVPGDG-----TPQVLVVVPTRELCIQVANDLKGAGKHLGIRTLAIYGGRPYEPQIEA 189

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +V+GTPGRL D    + L +  ++ +VLDEADEMLDLGF  DIE IL   P +R
Sbjct: 190 LRKGIDVVIGTPGRLLDLAEQQHLVLGKVRGLVLDEADEMLDLGFLPDIERILRMVPDER 249

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I T       Q   +R      +  H             D+   I  +
Sbjct: 250 QTMLFSATMPGPIITLARTFLRQPTHIRAEENDASAIHERTTQFVYRAHSMDKPEVIARV 309

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++F  T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V 
Sbjct: 310 LQAEDRGLTMIFSRTKRTAQKVADDLVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVL 369

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +   R + 
Sbjct: 370 VATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGVAVTLVDWDEMPRWKL 429

Query: 359 L 359
           +
Sbjct: 430 I 430


>gi|198458635|ref|XP_001361114.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
 gi|198136412|gb|EAL25690.2| GA11795 [Drosophila pseudoobscura pseudoobscura]
          Length = 527

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 219/489 (44%), Gaps = 38/489 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  KD + +AQTGSGKT AF L +   L  E 
Sbjct: 14  LRPWMVKQLTKLGLKGATPIQQNCIPAILSGKDCIGAAQTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    P  R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPSTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +     KD +  +  S       +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFMKESSIFPISKDCIEWSQDSNVATVDTLDQRYLLCADYDRDMVLIESLRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +    R  IA
Sbjct: 248 ENENSNVMIFTNTKKYCQLLSMTLKSMDIDNVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVA+RG+D+P ++LVI+  L   P+  +HR GRT RAGRKGMS+ +   P++++     
Sbjct: 308 TDVASRGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IETEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E   V L   R +  D +R  K G 
Sbjct: 425 KDPDEMEALYRKKQKDKLKEIRRKRKLQQADSATSEEGKVLLQDERFKSVDSARFEKKGR 484

Query: 458 GSRDNFKGS 466
           G   + K  
Sbjct: 485 GRSRSSKDG 493


>gi|156084736|ref|XP_001609851.1| DEAD box RNA helicase [Babesia bovis T2Bo]
 gi|154797103|gb|EDO06283.1| DEAD box RNA helicase, putative [Babesia bovis]
          Length = 714

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 192/405 (47%), Gaps = 30/405 (7%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +   N+P  +  A+ + G+ + T +Q   +   L  +D++  A+TGSGKTVAF L +
Sbjct: 296 MRTWAESNLPSELLRAIKDAGFKSPTPIQMQAIPIGLGMRDLIGLAETGSGKTVAFVLPM 355

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  L   +  +    P AL +APTRELA Q+  E     A       + +GG SV +
Sbjct: 356 LTYVKALPPLNEDTLQDGPYALTLAPTRELATQIHAETVKFSAFCSCRTVLVVGGHSVDQ 415

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  +L+NGA IV+GTPGR+ D +      ++    V+LDEAD M+D+GF + +  ILD  
Sbjct: 416 QGFELRNGAEIVIGTPGRIKDCLDRSYTVLTQCNYVILDEADRMIDMGFEEIVNDILDCI 475

Query: 177 P------------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           P                        K R   MFSAT+  A+  L K Y +  V V+I   
Sbjct: 476 PTSNLKDLDENLALQQELSTKAGYRKYRITQMFSATMPAAVEKLTKKYLRSPVIVSIGDV 535

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
                 I  R   +    +    +  L +      IVF + +       + ++    + +
Sbjct: 536 GSGKKSITQRFEFITEHRK-KQKLQDLLHTLEGQIIVFVNMKKVADVVARHISNMNLRAI 594

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           +L G  +Q  R  AL+  + G   + +ATDV  RG+D+  +  VI+ ++  + E   HR 
Sbjct: 595 SLHGGKTQDIREGALESFKAGDFDILVATDVVGRGLDVKGVTAVINFDMPKDIETYTHRI 654

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           GRTGRAG KGM++  + ++       L ++  +S   +  P +E 
Sbjct: 655 GRTGRAGAKGMAISFVTEDDSHLFYDLKQQL-ISTGNDIPPELEK 698


>gi|332076039|gb|EGI86505.1| DEAD-box ATP-dependent RNA helicase cshB [Streptococcus pneumoniae
           GA41301]
          Length = 411

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/427 (26%), Positives = 194/427 (45%), Gaps = 30/427 (7%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ESNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I  G 
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMI--GL 400

Query: 421 LRIHRAG 427
           ++  R  
Sbjct: 401 VKKKRKS 407


>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
           AFUA_1G14990) [Aspergillus nidulans FGSC A4]
          Length = 814

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/488 (25%), Positives = 220/488 (45%), Gaps = 24/488 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 304 NLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 363

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 364 PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRP 420

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 421 DVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 480

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + ++      +              R   ++++ + 
Sbjct: 481 FSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKE 540

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   V      +   L G +SQ++R  +++  RDG     +AT
Sbjct: 541 VYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLAT 600

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  +HR GRT RAGR G +  +  +  ++       
Sbjct: 601 DLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRK------- 653

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD--SIQGDEKKMVDVLLAKHDPEK-IAA 418
                VV     + +A   +   R++   +  D  S   D ++ +D +L +   EK +A 
Sbjct: 654 -----VVKAAVKAGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQ 708

Query: 419 GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
             +++ +    +    EI      +  +  R+   A K+G    +         LS   K
Sbjct: 709 AEMQVTKGENLIKHEAEIKSRPKRTWFETEREKRVAKKIGAAELNGPSKKEKVKLSNKDK 768

Query: 477 QKAEARWL 484
           ++ +A  L
Sbjct: 769 KRLDAAKL 776


>gi|154273987|ref|XP_001537845.1| hypothetical protein HCAG_07267 [Ajellomyces capsulatus NAm1]
 gi|150415453|gb|EDN10806.1| hypothetical protein HCAG_07267 [Ajellomyces capsulatus NAm1]
          Length = 496

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 179/414 (43%), Gaps = 35/414 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   +  V+ E +   GY   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 34  VKNFDEAGLHPVMRENIKLCGYKVPTPIQAYAIPAVLTGNDLIAVAQTGSGKTAAFLIPV 93

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTREL+ Q+  E   L  ++ 
Sbjct: 94  LSKLMGKAKKLAAPRPDLGNGFNESLDCVRAEPLVLIVVPTRELSTQIFDEARRLCYRSM 153

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADEML
Sbjct: 154 LRPCVVYGGGPTREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKYTIVDEADEML 213

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  ++  ++     +     R M+  +           K    D VR+ I      H
Sbjct: 214 HSDWETELSKLMSGGDTNEDADHRYMMFSATFNKGCRELARKFLAADHVRIRIGRAGSAH 273

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++    V      +  A+ ++L        +VF +T+         L        ++  
Sbjct: 274 LNVSQNIVYAEDHLKKQALYDLLISMPPSRTLVFVNTKTQADLIDDYLYNMGLPSTSIHS 333

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +HR 
Sbjct: 334 DRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSATHGGIEEYIHRI 393

Query: 333 GRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAIR 379
           GRT R G +G++          ++     ++  E    +        P  + +R
Sbjct: 394 GRTARIGNEGLATSFYNHDRNSDIAADLVKILLECKQPLPDFLESEKPEGDDVR 447


>gi|146104251|ref|XP_001469775.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074145|emb|CAM72887.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503545|emb|CBZ38631.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 527

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 228/479 (47%), Gaps = 28/479 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   Q +  A ++ G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFQDLGLCQELCTACADAGWQHPTRIQASAITVFAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LLA+            L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLAQRK----TPYLSVLVMVPTRELAQQVTAQFVLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H+VVGTPGR+ DH+       +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVVVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  I  L K   +D V + +  +N     +    +    +   + +   
Sbjct: 229 NRRTMLFSATLSTKIDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V + T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHKITLTLRILGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEP-APSVE-----------------AIRERDAQRILQ-DPLFLDSIQGD 399
           + ++  V  V  P  P  E                  IRE   +R L+ +   L + +  
Sbjct: 409 IEQQTGVKCVEYPFLPESEVQLVLQRVEDAEQEAIREIREDAEERSLEKESRQLTTARKG 468

Query: 400 EKKMVDVLLAKHDPEKIAAGF--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           ++   D  +   D +   + F  LR+ R      E        S   + R+  +  K  
Sbjct: 469 KRDRGDADMGYDDAKHGTSDFATLRMRREHESIFEMTKKEQHKSLWAKRREAKQQAKSR 527


>gi|71995718|ref|NP_497615.2| hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
 gi|66275464|gb|AAY43989.1| Hypothetical protein Y71H2AM.19 [Caenorhabditis elegans]
          Length = 643

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/390 (27%), Positives = 180/390 (46%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +F ++   + I E +   GY   T VQ+  +      +D++  AQTGSGKT AF + L
Sbjct: 165 ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPL 224

Query: 59  ASTLLAEND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + +L +                   P AL ++PTREL++Q+  E      +T +  A+ 
Sbjct: 225 VNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALL 284

Query: 109 IG-GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            G   +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF  
Sbjct: 285 YGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEP 344

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDY 221
            I  I++ +    +    +A  S       +   +D ++ N          +   + +  
Sbjct: 345 QIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQK 404

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +     R   +  +     +   +VF  T+   S     L    ++VV + G+L Q 
Sbjct: 405 IVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQF 464

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER   L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  
Sbjct: 465 EREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNV 524

Query: 342 GMSVFVI---PQNMQRRAERLFREANVSVV 368
           G++        +N+ R    L  EAN  + 
Sbjct: 525 GLATSFFNDKNRNIARELMDLIVEANQELP 554


>gi|312867841|ref|ZP_07728046.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
 gi|311096596|gb|EFQ54835.1| putative DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
           parasanguinis F0405]
          Length = 425

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 186/420 (44%), Gaps = 26/420 (6%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N    I EAL E  +   T VQE ++   L   D++  ++TGSGKT  F L + 
Sbjct: 7   MKFTEFNFKPYIQEALKEINFREATEVQEKLIPIVLAGNDLVGESKTGSGKTHTFLLPIF 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
            TL  ++ +        A+  AP+RELA Q+ +    + + +   + +           +
Sbjct: 67  QTLNEDSQQVE------AVITAPSRELATQIYQAARQIASHSEKEIRIVNYVGGTDKSRQ 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +      HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I    
Sbjct: 121 IEKLQVKQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLSTVDKIASRL 180

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P++ + L+FSATI   +    K Y  + V   I ++      ID   V     D++  I 
Sbjct: 181 PQQLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIY 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L     +V  + G++  +ER   +  +++    
Sbjct: 241 QLTKTLQPYLAMIFVNTKTRADDLHAYLVAQGLKVAKIHGDIPPRERKRIMNQVKNLDFE 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +     
Sbjct: 301 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGVAITLYQPSDDSDI 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++L++ +  D+   D +   +    K D E I
Sbjct: 361 RELEK---MGIRFVP-------------KVLKNGVIEDTYDRDRRANREKKQEKLDIEMI 404


>gi|215254416|gb|ACJ64200.1| vasa [Halocynthia roretzi]
          Length = 691

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 176/384 (45%), Gaps = 16/384 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+  ++P+ + + + +  Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 237 ISSFDEADLPETVRQNIRKANYKKPTPVQKYSIPIVNSDRDLMACAQTGSGKTAAFLLPV 296

Query: 59  ASTLLAE---NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              ++     ND FS    P A+ + PTREL  Q+  E       T +   V  GG SV 
Sbjct: 297 LRGMVKNGITNDMFSEKQLPQAVVVGPTRELVYQIFLETRKFSKNTIIKPIVAYGGTSVA 356

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L  G +I++ TPGRL D I    + +++L+ ++LDEAD MLD+GF  +I  ++ +
Sbjct: 357 HQLSQLSRGCNILIATPGRLLDFINRGKVGLANLQYLILDEADRMLDMGFEPEIRRLVAA 416

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSD 230
                +    +   S       +    + +R +             SD+    + V  +D
Sbjct: 417 PDIPDKYNRHTLMFSATFPNNIQELAHEFLRDDFLFLTVGRVGGACSDVTQTVLQVDTND 476

Query: 231 RDN--AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +      +           +VF  T+ +       L++      ++ G+  Q+ER  AL 
Sbjct: 477 KREKLMQLIADVEETKARTLVFVDTKRNADFLACFLSQEGCPTTSIHGDRLQREREQALY 536

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   + IAT VAARG+D+P +E VI+ +L S  +  +HR GRTGR G  G +    
Sbjct: 537 DFKSGVCPILIATSVAARGLDIPKVEHVINFDLPSEIDEYVHRIGRTGRCGNLGQATSFY 596

Query: 349 PQN----MQRRAERLFREANVSVV 368
             +    + R   ++  ++   V 
Sbjct: 597 CDDKDGALARSLVKILADSQQEVP 620


>gi|260949783|ref|XP_002619188.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
 gi|238846760|gb|EEQ36224.1| hypothetical protein CLUG_00347 [Clavispora lusitaniae ATCC 42720]
          Length = 764

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/423 (23%), Positives = 188/423 (44%), Gaps = 11/423 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P  +     L E  +V++T +Q   +   L+ +D++ +A+TGSGKT+AF + +
Sbjct: 43  ISQFADLPITEATARGLKEANFVSMTDIQRKCIPLALKGEDIMGTARTGSGKTLAFLVPV 102

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+  N   +      AL I+PTRELAVQ+   L  +         +  GG  V  E+
Sbjct: 103 IERLVHSN--ITGLDGLAALIISPTRELAVQIFEVLTKIGKHNSFSAGLVTGGKDVQYEK 160

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G++ S+L+ +VLDEAD  LD+GF+  I+ I+     
Sbjct: 161 ERVARMNILVGTPGRVSQHLNETFGMDTSNLQVLVLDEADRCLDMGFKKQIDSIVSHLSP 220

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAI 235
           +R+ L+FSAT S +I  LA+    + ++V ++S+         +D   V + L ++ + +
Sbjct: 221 ERQTLLFSATQSDSIKDLARLSLTNPIKVGVSSDATLSATPETLDQYYVRIPLEEKLDVL 280

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     +VF S+   V    +        +  L      ++ S           
Sbjct: 281 WSFIKSHLKSKILVFFSSSKQVQYTYESFRTLQPGISLLKLYGRHKQTSRLETTTKFSHA 340

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR G S+ ++  + +
Sbjct: 341 QYACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRCARFGRPGKSLLMLTPSEE 400

Query: 354 RRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               +  +  N+ +        S ++IR +      +DP   +  Q         +  + 
Sbjct: 401 EGMLKRLKNQNIDIKIMNIKQKSKKSIRPQLQSLCFKDPQMKNLGQRAFISYYRSVYIQK 460

Query: 412 DPE 414
           D +
Sbjct: 461 DKD 463


>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 443

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 5/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++   A  P AL +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 66  NKAFSAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRKYPK 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 126 FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +           A+            +   L  ++  +  IL    
Sbjct: 186 SATLDHAEVNDIAFEMLDAPKRIAVGAASEEHKDITQKFYLCDHLDHKEAILERILEEAQ 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R T+ L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YKQLIIFTATRIDTERLTQKLNEKKLKAVALSGSLNQTQRNTIMSQFERAVFKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V++ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 306 ASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAYL 365

Query: 364 NVSVVWEPAPSV 375
              + +     +
Sbjct: 366 QQDLSFSELEGL 377


>gi|322708287|gb|EFY99864.1| ATP-dependent RNA helicase DBP4 [Metarhizium anisopliae ARSEF 23]
          Length = 796

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 181/395 (45%), Gaps = 14/395 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  Q     +    +  LT VQ+  +   L++ DVL +A+TGSGKT+AF + +
Sbjct: 49  IKTFSDLPLSQPTISGIKASHFQTLTEVQQQAIPLALKDNDVLGAAKTGSGKTLAFLIPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELAVQ+   L  +         + IGG ++  E 
Sbjct: 109 LEKLY--RAQWTEFDGLGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEA 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G + ++L+ +VLDEAD ++D+GF+  ++ +++  PK
Sbjct: 167 ERLARMNILVCTPGRMLQHLDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALVEHLPK 226

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ LMFSAT S  ++ LA+   K+   V++     +   +++    +   L ++ + + 
Sbjct: 227 SRQTLMFSATQSKKVSDLARLSLKEPEYVSVHEAATSATPTNLQQHYITTPLPEKLDTLY 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
             L+ +     IVF S+   V    +        +  L     Q++ +           +
Sbjct: 287 GFLKSNLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQRQVARLEITSRFTAAK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARGID P ++ VI  +   + +  +HR GRT R   KG +V  +  + + 
Sbjct: 347 HSCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRTARYQSKGRAVLFLDPSEEP 406

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
              +   +  + +          +RE+  + I  D
Sbjct: 407 GMVKRLEQKKIPIQKVN------VREKKKKSIKND 435


>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
          Length = 751

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 231/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 236 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 295

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 296 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 352

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 353 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 412

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 413 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 472

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 473 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 532

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 533 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 590

Query: 359 LFREANVSVVWEPAPS--------VEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLA 409
           + R A  SV    + +        V+ ++  +  ++++      + I  +EK+  ++L A
Sbjct: 591 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMDDTIEDILVEEKEEKEILRA 650

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 651 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 710

Query: 463 FKGSSW-FS 470
                  + 
Sbjct: 711 DGNGVRSYR 719


>gi|3047077|gb|AAC13590.1| contains similarity to the conserved C-terminal domain of helicases
           (Pfam: helicase_C.hmm, score: 90.11), similar to
           DEAD-box h [Arabidopsis thaliana]
          Length = 477

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 200/373 (53%), Gaps = 12/373 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ + E+L +RG  +L  +Q A+L P L+ +D++  A+TG+GKT+AFG+ +   L  E
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167

Query: 66  NDRFSPASA------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
              ++   +      P  L +APTRELA QV +E++        V     GGVS   ++ 
Sbjct: 168 AGDYTAFRSLRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC--VYGGVSYTIQQS 225

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  +VVGTPGR+ D I G+ L +  ++ +VLDEAD+ML +GF + +E IL++ P K
Sbjct: 226 ALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTK 285

Query: 180 RRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+   +        +   +   V    E        Y     + S R     
Sbjct: 286 RQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSD 345

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I  Y      IVF  T+   +    +   +     AL G++SQ +R   L   R G+  
Sbjct: 346 LITVYAKGGKTIVFTQTKR-DADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFT 404

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P+++LVIH EL ++PE  +HRSGRTGRAG++G ++ +   + +R  
Sbjct: 405 VLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTV 464

Query: 357 ERLFREANVSVVW 369
             L R+      +
Sbjct: 465 RSLERDVGCHFEF 477


>gi|297584627|ref|YP_003700407.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297143084|gb|ADH99841.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
           MLS10]
          Length = 432

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/356 (29%), Positives = 177/356 (49%), Gaps = 8/356 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL + G    T +QE I+    + +DV+  +QTG+GKT+AF L L + L  E 
Sbjct: 10  LADYLIEALKDEGIDLPTEIQERIIPAVNKGEDVIGRSQTGTGKTLAFLLPLLTRLDPEK 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNG 124
                      +  APTRELA Q+    +   +   T V   + +GG    R     +  
Sbjct: 70  KE------TQIVITAPTRELASQLYDVCKRYASFSETTVTSQLIVGGTDRKRMLEKAKQR 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIV+GTPGR+ D ++   LN   + + V+DEAD+MLD+GF ++++ I     +  ++L+
Sbjct: 124 PHIVIGTPGRILDMMKEAALNPMTVSSFVVDEADQMLDMGFLEEVDRIASMMNENLQLLV 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI  ++    K Y      V +  +    S+I +  +     DR   +V I +    
Sbjct: 184 FSATIPESLKPFLKKYMNHPKEVEVQPKQSAPSEISHWLIPDRDRDRKEILVTIAKDLNP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+F +T+ S     K +    F V  + G++  ++R   L+ ++    +  +ATD+ 
Sbjct: 244 FLAIIFTNTKESADEVFKRMLAEGFNVDCIHGDIQPRQRKKVLKKLQTAEIQYLVATDLV 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           ARGID+  +  +I+ E+    E  +HR GRT RAG  G ++    ++ Q   E+L 
Sbjct: 304 ARGIDVKGVSHIINFEIPKELEYYVHRVGRTARAGWDGTAITFFGRSDQPSIEKLE 359


>gi|125546083|gb|EAY92222.1| hypothetical protein OsI_13943 [Oryza sativa Indica Group]
          Length = 591

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 208/500 (41%), Gaps = 29/500 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F  +   +    A+ E  Y  LT +Q   +   L  KDV+ +A+TGSGKT+AF +    
Sbjct: 98  LFSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIE 157

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L      F P +    + + PTRELA+Q     + L       +   IGG     E   
Sbjct: 158 MLHH--AHFMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHSQTLGYIIGGNGRRGEADQ 215

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +++V TPGRL DH++         LK +++DEAD +L+  F +D++ I    P  
Sbjct: 216 LAKGVNLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLN 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---------DYRAVLVALSD 230
           R+ ++FSAT +  +   AK   +               D               ++  + 
Sbjct: 276 RQTVLFSATQTEQVKEFAKLSFEKNEESTSKPVYVGVDDAETNATVEGLQQGYCVIDSAR 335

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R   +   L+    K  +VF S+  SV    ++L     +   + G+  QQ+R+      
Sbjct: 336 RFLVLYAFLKKKQNKKVMVFFSSCNSVKFHAELLNFLQIECSDIHGKQKQQKRTTTFFNF 395

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMS-VFVI 348
                 + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R  + KG + +F++
Sbjct: 396 CKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEKGKGEALLFLL 455

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           PQ ++       + A +S+        +    +   + I+ +  FL+    +  +   + 
Sbjct: 456 PQELKFLI--YLKAAKISLTELVFNENKVPNLQSHLENIVGENYFLNQSAKEAYRSYILA 513

Query: 408 LAKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
              H  + I          +  +          + L S   + R   R  KV GG R   
Sbjct: 514 YDSHSMKDIFDVHNLNLKDVAASFCFKNPPKVNIDLESSASKHRRKMR--KVDGGRRHGI 571

Query: 464 KGSSWFSLSVGSKQKAEARW 483
             ++ +    G K   + R 
Sbjct: 572 SAANPY----GRKGGDDKRQ 587


>gi|75328082|sp|Q84T03|RH27_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 27
 gi|29150366|gb|AAO72375.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|108711610|gb|ABF99405.1| ATP-dependent RNA helicase C1F7.02c, putative, expressed [Oryza
           sativa Japonica Group]
 gi|125588287|gb|EAZ28951.1| hypothetical protein OsJ_12997 [Oryza sativa Japonica Group]
          Length = 590

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 208/500 (41%), Gaps = 29/500 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F  +   +    A+ E  Y  LT +Q   +   L  KDV+ +A+TGSGKT+AF +    
Sbjct: 97  LFSELGVSEPTARAIREMNYTYLTQIQARSIPHLLNGKDVMGAAKTGSGKTLAFLIPAIE 156

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L      F P +    + + PTRELA+Q     + L       +   IGG     E   
Sbjct: 157 MLHH--AHFMPRNGTGVVVVCPTRELAIQTHNVAKELMKYHSQTLGYIIGGNGRRGEADQ 214

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L  G +++V TPGRL DH++         LK +++DEAD +L+  F +D++ I    P  
Sbjct: 215 LAKGVNLLVATPGRLLDHLQNTKGFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLN 274

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---------DYRAVLVALSD 230
           R+ ++FSAT +  +   AK   +               D               ++  + 
Sbjct: 275 RQTVLFSATQTEQVKEFAKLSFEKNEESTSKPVYVGVDDAETNATVEGLQQGYCVIDSAR 334

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           R   +   L+    K  +VF S+  SV    ++L     +   + G+  QQ+R+      
Sbjct: 335 RFLVLYAFLKKKQNKKVMVFFSSCNSVKFHAELLNFLQIECSDIHGKQKQQKRTTTFFNF 394

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMS-VFVI 348
                 + + T+VAARG+D+PD++ ++  +    P++ +HR GRT R  + KG + +F++
Sbjct: 395 CKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTARGEKGKGEALLFLL 454

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           PQ ++       + A +S+        +    +   + I+ +  FL+    +  +   + 
Sbjct: 455 PQELKFLI--YLKAAKISLTELVFNENKVPNLQSHLENIVGENYFLNQSAKEAYRSYILA 512

Query: 408 LAKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
              H  + I          +  +          + L S   + R   R  KV GG R   
Sbjct: 513 YDSHSMKDIFDVHNLNLKDVAASFCFKNPPKVNIDLESSASKHRRKMR--KVDGGRRHGI 570

Query: 464 KGSSWFSLSVGSKQKAEARW 483
             ++ +    G K   + R 
Sbjct: 571 SAANPY----GRKGGDDKRQ 586


>gi|289628603|ref|ZP_06461557.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647202|ref|ZP_06478545.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867826|gb|EGH02535.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 482

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 158

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 159 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 218

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 219 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 278

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 279 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 338

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 339 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 399 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 458

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 459 KLGRKISCETPPT 471


>gi|90417199|ref|ZP_01225126.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
 gi|90330975|gb|EAS46236.1| putative ATP-dependent RNA helicase DbpA [marine gamma
           proteobacterium HTCC2207]
          Length = 466

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 126/401 (31%), Positives = 205/401 (51%), Gaps = 11/401 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L+  GY  +T +Q   L   L  KDV+  A+TGSGKT  F L L + L  +
Sbjct: 14  DLNPALVDNLASLGYSEMTPIQAQALPSILASKDVIAKAKTGSGKTATFSLGLLNKLDVK 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
             R         L + PTRELA QV  E+  L      + V    GGV+   +   L++G
Sbjct: 74  RFRV------QTLVLCPTRELADQVAAEIRKLARGIHNIKVLTLCGGVAFGPQVGSLEHG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI+VGTPGR+ DH+R   LN+ +L  ++LDEAD MLD+GF+  ++ I+   P++R+ ++
Sbjct: 128 AHIIVGTPGRVEDHLRKANLNLDNLTTLILDEADRMLDMGFQQALDDIVGYMPRQRQTML 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +A+   +  V V +   +   S ++    +     R  A+  +L+ H  
Sbjct: 188 FSATYPEKIDKIAQRIMRSPVTVEVQDSHSSQSIVETLYQIDNDQSRIEAVRLLLQAHQP 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++FC+T+    R    L    ++  AL G+L Q++R   L    +    V +ATDVA
Sbjct: 248 ETTLIFCNTKIETDRVANELRAVGYEASALHGDLEQKDRDQTLACFANRSVSVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L++VI+ +++   E   HR GRTGRAG +G++  +  Q    + + L     
Sbjct: 308 ARGLDIDALDMVINYQMAQELEVHTHRIGRTGRAGAQGIACSLYTQKETYKIDLLEDYLE 367

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                   P +E +RE     +   P+    I G +K+ + 
Sbjct: 368 QKFNRGDLPHLELLREP----VFYPPMVTIHIGGGKKQKLR 404



 Score = 55.0 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV 513
           +       +  G KQK     ++  L  + GI    IG I+V     +V V
Sbjct: 387 YPPMVTIHIGGGKKQKLRPGDIVGALTGADGIPGTEIGKIQVGDHWAYVAV 437


>gi|300122522|emb|CBK23092.2| ATP-dependent RNA helicase DBP4 [Blastocystis hominis]
          Length = 687

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 181/400 (45%), Gaps = 10/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE +P      + L+E G+  +T +Q+  L   L  +D+L  A+TGSGKT+AF +  
Sbjct: 61  IKKFEALPLSNYTKKGLNEAGFTEMTDIQQKSLISALMGRDILGCAKTGSGKTLAFLIPA 120

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E  R++       + I+PTRELA+Q+   L  +         + IGG     E+
Sbjct: 121 LECLYRE--RWTEEDGIGIVIISPTRELAMQIFDVLCTIGKYHSFSAGLVIGGKDFEEEQ 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + +   +V      L    +  G + S+++ +VLDE D  LD+GF+  I+ I+DS   
Sbjct: 179 SRIVSMNILVATPGRFLQHLEQTPGFDCSNVRGLVLDEVDRCLDMGFKTTIDHIVDSLGG 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
            R+  +FSATI   + TLA +   + V +N+ S++   +      R ++  LS +   + 
Sbjct: 239 DRQTQLFSATIDENVKTLASSILSNPVSINVNSDDDYATPTTLTQRYIVCDLSRKVELLY 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGR 294
           + ++ H     +VF ++R  V    +        V  L     Q++              
Sbjct: 299 SFIKSHLRCKILVFAASRKEVRFLFEAFRRMKPGVSLLHLHGKQKQTMRTYTYYDFIQKD 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V   TDVAARGID P ++ V+  +   +    +HR GR GR   KG  +  +    + 
Sbjct: 359 HAVLFCTDVAARGIDFPAVDWVVQFDCPEDAATYIHRVGRAGRFRAKGNGLLFLLPQEEA 418

Query: 355 RAERLFREANVSVVWEPA-PS-VEAIRERDAQRILQDPLF 392
               +  EAN+ +      PS  +++  R  + I +D   
Sbjct: 419 AFLPMMAEANIPLKRIAVNPSRTQSVTNRLMEEIARDETL 458


>gi|226437753|gb|ACO56244.1| putative DEAD-box RNA helicase [Caenorhabditis elegans]
          Length = 708

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/390 (27%), Positives = 180/390 (46%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +F ++   + I E +   GY   T VQ+  +      +D++  AQTGSGKT AF + L
Sbjct: 230 ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPL 289

Query: 59  ASTLLAEND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + +L +                   P AL ++PTREL++Q+  E      +T +  A+ 
Sbjct: 290 VNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALL 349

Query: 109 IG-GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            G   +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF  
Sbjct: 350 YGGRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEP 409

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDY 221
            I  I++ +    +    +A  S       +   +D ++ N          +   + +  
Sbjct: 410 QIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQK 469

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +     R   +  +     +   +VF  T+   S     L    ++VV + G+L Q 
Sbjct: 470 IVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQF 529

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER   L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  
Sbjct: 530 EREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNV 589

Query: 342 GMSVFVI---PQNMQRRAERLFREANVSVV 368
           G++        +N+ R    L  EAN  + 
Sbjct: 590 GLATSFFNDKNRNIARELMDLIVEANQELP 619


>gi|229172846|ref|ZP_04300400.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
 gi|228610591|gb|EEK67859.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus MM3]
          Length = 389

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSATI+ A    A++   +   V I     +        +        N  V  + + 
Sbjct: 175 VFFSATITKAAEDAARDLAVEPQLVRITRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLQFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ Q  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTQQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|331008996|gb|EGH89052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 482

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 158

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 159 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 218

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 219 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 278

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 279 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 338

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 339 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 399 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 458

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 459 KLGRKISCETPPT 471


>gi|300721423|ref|YP_003710694.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
 gi|297627911|emb|CBJ88457.1| putative ATP-dependent helicase with nucleoside triP hydrolase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 427

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 110/372 (29%), Positives = 182/372 (48%), Gaps = 5/372 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   +  AL ++G+ N T +Q   L   +  +DV   AQTG+GKT+AF  +  
Sbjct: 9   KKFSDFALHPKVLGALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASTF 68

Query: 60  STLLAEN-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             LL     +    + P AL +APTRELAVQ+  + + L   TG+ + +  GG    ++ 
Sbjct: 69  HYLLTHPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYGGDGYDKQL 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L++G  IV+GT GRL D+ +   +++  ++ VVLDEAD M DLGF  DI ++    P 
Sbjct: 129 KVLESGVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIRWLFRRIPA 188

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               L   FSAT+S  +  LA     +   V +    +    I       +  ++   + 
Sbjct: 189 ATERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIREELFYPSNEEKMRLLQ 248

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        I+F +T+         LA    +V  L+G+++Q++R   L+    G   
Sbjct: 249 TLLEEEWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILEEFSLGNLD 308

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +      
Sbjct: 309 ILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACEEYVLNL 368

Query: 357 ERLFREANVSVV 368
             +       + 
Sbjct: 369 PSIEEYIQHQIP 380


>gi|170696968|ref|ZP_02888064.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170138142|gb|EDT06374.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 133/376 (35%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL + 
Sbjct: 9   FSALPLTPAALANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLAR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------TRRFDVQAMVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E   +S I  R   VA ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDNSKIRQRFYEVAETERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVE 376
           +     V W P   ++
Sbjct: 362 QALKRDVEWHPLAELK 377



 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G + + IG I V    T+V   
Sbjct: 377 KPAGNDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIE 436

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLGGE 539
             V+ D +  L       K ++++ +  E
Sbjct: 437 RGVAHDALRKLNAGKIKGKRVKVRLMDEE 465


>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 447

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 171/366 (46%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  +        A+ +GG + + + + L+    
Sbjct: 70  TKSFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALILGGENFNDQVKALRRYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I        ++  M 
Sbjct: 130 FIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELRRIHKAAKHRRRQTLMF 189

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +      ++            S            +   L  ++  +  +L    
Sbjct: 190 SATLDHAEVNDIASEMLNAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERVLEEAE 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +TR    R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 250 YRQVIIFTATRDDTERLTNKLNEKKLKAVALSGNLNQTQRNTIMSQFERAVFKILVTTDV 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+  +  VI+ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 310 ASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVETYL 369

Query: 364 NVSVVW 369
              + +
Sbjct: 370 QQDLNF 375


>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
 gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
          Length = 748

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 221/464 (47%), Gaps = 19/464 (4%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + + + L+  GY   + +Q A +   L  KD++  A TGSGKT A+ + + 
Sbjct: 236 KSFQSLDLARPVLKGLASLGYTKPSPIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPII 295

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL ++ + +   +   + + PTRELA+QV    + +      +   + +GG+++ ++ 
Sbjct: 296 ERLLYKSSKVA---STRVVILTPTRELAIQVCDVGKKIGRYVNNLTFGLAVGGLNLRQQE 352

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSS 176
           + L+    IVV TPGRL DHIR     ++  L+ +V+DEAD ML+ GF+ ++ E +    
Sbjct: 353 QQLKTRPDIVVATPGRLIDHIRNSASFSLDALEILVMDEADRMLEEGFQVELTEILTLIP 412

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             KR+ ++FSAT++  I  L +      VR+ I       + +    V +   D     +
Sbjct: 413 KHKRQTMLFSATMNTKIQDLIQLSLNKPVRIMIDPPKAAANKLVQEFVRIRKKDEMKPAL 472

Query: 237 NIL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                           +VF S + +  R   +L     +V  L G L+Q++R N +   +
Sbjct: 473 LYYLLKSVDPSQQSRIVVFVSRKETAHRLRIILGLLGMKVSELHGSLTQEQRLNNVNDFK 532

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +    V I TD+AARG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G S+  + + 
Sbjct: 533 NLTVPVLICTDLAARGLDIPKIEMVINYDMPKSHEIYLHRVGRTARAGREGRSITFVGEA 592

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R   + + A  S+    +      R  D  ++    ++ + +Q     + +VL  + 
Sbjct: 593 AADR--NIVKAAMKSLEESQSQQKAVSRNVDWPKV---EVYHNVVQEKNDTVQEVLEEEK 647

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
             +++ A  + + +A     +    +     R  F  +S   K 
Sbjct: 648 SAKEVLAAEMELAKAD-NLIKYGKDIQSRPRRTWFESESEKKKR 690


>gi|262042929|ref|ZP_06016074.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039769|gb|EEW40895.1| ATP-independent RNA helicase DbpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 457

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 130/388 (33%), Positives = 199/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSITPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEIDTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G     IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDLGFAGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|320637247|gb|EFX07073.1| ATP-dependent RNA helicase DbpA [Escherichia coli O157:H7 str.
           G5101]
          Length = 457

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E  Y+ +T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPPAQLTNLNELDYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQQID------ASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGM 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D + + I S +      + +    +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPI-EQQFCETSSKGKIPLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L E     ++L G+L Q++R   L    +G AR
Sbjct: 234 RLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +     + + W+  P+  +I   +A+
Sbjct: 354 NIISDMLQIKLNWQTPPANSSIVTLEAE 381



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 320 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQGGK 445


>gi|116672314|ref|YP_833247.1| DEAD/DEAH box helicase domain-containing protein [Arthrobacter sp.
           FB24]
 gi|116612423|gb|ABK05147.1| DEAD/DEAH box helicase domain protein [Arthrobacter sp. FB24]
          Length = 635

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFAGLGTPKELADTLTAQGITEPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPL 60

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E   F     P+ L +APTRELA Q+   +E +    G+   V  GG+S  R+
Sbjct: 61  VARLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPMAKAMGLNTTVIYGGISQARQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P
Sbjct: 121 EKALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  + + Y  + +  ++       + +++  ++V        ++ 
Sbjct: 181 SQGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  + F  T+    +  K L +     V L G LSQ  R   L     G  RV
Sbjct: 241 ELASGAGRRVL-FMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 300 LVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVK 359

Query: 358 RLFREANVSVVWE 370
           +L + A V V +E
Sbjct: 360 KLMKAAGVEVNFE 372


>gi|159484128|ref|XP_001700112.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272608|gb|EDO98406.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 637

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/382 (30%), Positives = 181/382 (47%), Gaps = 19/382 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P  +   L+ +G    T +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 196 MK----LPPAVLRVLASKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFTLPMIL 251

Query: 61  TLLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIGGV 112
             L E  R        P+ + I P+RELA Q     +             V V +CIGG+
Sbjct: 252 IALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCQALNADRYPEVRVMLCIGGI 311

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG-FRDDIEF 171
                   L+ G H VV TPGRL D +  K +N+   + + LDEAD M+D   F DD+  
Sbjct: 312 DPKPMYETLRRGLHAVVATPGRLKDLLHKKRMNLDICRYLCLDEADRMVDQVGFEDDVRD 371

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL     +R+ LMFSAT+   I   A++   D V VN+      + D+      V    +
Sbjct: 372 ILSFFRGQRQTLMFSATMPAKIKAFAESALVDPVEVNVGRAGAANMDVIQEVEYVKEEAK 431

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       +VF   +  V    + L     + VA+ G+ +Q++R  A+   +
Sbjct: 432 LPYLLECLQKTAPP-VLVFAENKRDVDIIHEYLLVQGVEAVAVHGDKAQEDRHAAIASFK 490

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            G A V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I   
Sbjct: 491 KGDADVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFINTK 550

Query: 349 --PQNMQRRAERLFREANVSVV 368
              + +    + L +EA   V 
Sbjct: 551 QCSETILLDLKHLLKEAKQRVP 572


>gi|51476855|emb|CAH18395.1| hypothetical protein [Homo sapiens]
 gi|119574692|gb|EAW54307.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo
           sapiens]
 gi|123993911|gb|ABM84557.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|124000685|gb|ABM87851.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [synthetic construct]
 gi|189054973|dbj|BAG37957.1| unnamed protein product [Homo sapiens]
          Length = 715

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 140/590 (23%), Positives = 239/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 180 LHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 298 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 533

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 534 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 591

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 592 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 635

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 636 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 684


>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
           mellifera]
          Length = 739

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/419 (26%), Positives = 202/419 (48%), Gaps = 13/419 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++   +V+ T +Q A +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 162 NLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAAYMLPTLERLLYR 221

Query: 66  NDRFSPASAP---LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                P   P     L + PTREL VQV +  + L   T + V + +GG+ V  +   L+
Sbjct: 222 -----PLDGPAISRVLVLVPTRELGVQVYQVTKQLSQFTTIEVGLSVGGLDVKAQEAVLR 276

Query: 123 NGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               IV+ TPGRL DH       ++  ++ ++LDEAD MLD  F + +++I+    + R+
Sbjct: 277 RNPDIVIATPGRLIDHLKNTPTFSLDSIEVLILDEADRMLDEYFAEQMKYIVKQCSRSRQ 336

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNI 238
            ++FSAT++  +  LA       V+V I S      ++    + +       R+  +  +
Sbjct: 337 TILFSATMTEEVKDLAAVSLNKPVKVFIDSNQDVAFNLRQEFIRIRKEREGDREAILAAL 396

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +      + +VF  T+    R   +L     +V  L G L+Q +R   L   ++    + 
Sbjct: 397 ICRTFHDHVMVFVQTKKQAHRLHILLGLLGIKVGELHGNLTQPQRLENLTKFKNEEIDIL 456

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  ++ VI+  + +  ++ +HR GRT RAGR G+SV +  +  +   + 
Sbjct: 457 LATDVAARGLDISGVKTVINFVMPATMQHYIHRVGRTARAGRVGVSVSLAGEQERSLVKE 516

Query: 359 LFREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + + A   V     PS +     +  Q +  D   +   + +E+++  +    +  EK+
Sbjct: 517 IIKNAKNPVKNRIIPSDIIDKYYKKLQSLEPDVEKILEEERNERELAKIENQANRAEKL 575


>gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 804

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/583 (21%), Positives = 234/583 (40%), Gaps = 42/583 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F N+ + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + + +
Sbjct: 24  FQSF-NLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL A     S       L ++PTREL++Q+ R    L     +  A  +GG S+ ++   
Sbjct: 83  TLKAH----SKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFEL 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   IVV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 139 LASNPDIVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESC 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--------D 232
           +  +FSAT+   +         + V + + SE +    +   A LV   ++         
Sbjct: 199 QRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLK 258

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +           A++F  ++  V     +L  +     A+ G++ Q+ R  A++    
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTAYSISTSAVHGQMDQEARRLAVRSFAK 318

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 319 RETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFED 378

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDA--QRILQDPLFLDSIQGDEKKMVDVLLAK 410
                 L +     +   P P        D    R+ ++ + L+ +   ++   + +  +
Sbjct: 379 FPYYVDLMQFIGRPLQSAPVPGDLLFTADDGCYGRLPEEDIQLE-LDFLKRLHENDVEVR 437

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWF 469
           +    +     + +R       E    +        R       +   GS         F
Sbjct: 438 NMARVVQNAHKKFNRTKKKPSHEAIQEARKPQYAFDRTPLHPMLLERLGSTRVRADEVRF 497

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLRRTVKLD 528
            L     ++ + + L                 + +       E+   +    L R+   +
Sbjct: 498 DL-----KRFKPKELF----------------LEIGSKEKLFEIRPPETAQSLARSANAE 536

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            G++    GG        K   F  +  Q    +R +  +  S
Sbjct: 537 GGVK---KGGAASVAPPAKPLSFAERMLQRAQERRKREREVGS 576


>gi|221124764|ref|XP_002163050.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
           [Hydra magnipapillata]
          Length = 396

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 110/420 (26%), Positives = 194/420 (46%), Gaps = 60/420 (14%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    V+ E+    G+ + T +Q   +   L  KD++  A+TGSGKT AF L +  
Sbjct: 10  TFKDLGVTDVLCESCLRLGWTHPTKIQREAIPLALEGKDIIGLAETGSGKTGAFALPVLQ 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TLL    R        AL I PTRELA Q+  + E L +  G+  AV +GGV +  +   
Sbjct: 70  TLLDNPQR------LYALVITPTRELAFQISEQFEALGSSIGIKCAVIVGGVDLMTQSLA 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    HIV+ TPGRL DH+      ++  LK +++DEAD +L++ F +++  IL   PK+
Sbjct: 124 LTKKPHIVIATPGRLVDHLENTKGFSLRSLKYLIMDEADRILNMDFEEEVNKILKVIPKE 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +   K+ V+V ++++ +    +    + +    +   +  + 
Sbjct: 184 RSTYLFSATMTKKVAKLQRASLKNPVKVEVSTKFQTVEKLQQSYIFIPNKFKAKRLGALN 243

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +Y      I                                                  I
Sbjct: 244 KYKSKSRTI-------------------------------------------------LI 254

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G S+  + Q      +R+
Sbjct: 255 ATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRI 314

Query: 360 FREANVSVVWEPAPSVEAIR--ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +     +   P    E +   ER  +      + L  +   ++K +D+   ++  EKI+
Sbjct: 315 EQLIGKKLPLHPMVEEEVMLLVERVTEAQRYAKMELKQVHETKRKTIDIDDEENSTEKIS 374


>gi|156095474|ref|XP_001613772.1| pre-mRNA splicing factor RNA helicase PRP28 [Plasmodium vivax
           SaI-1]
 gi|148802646|gb|EDL44045.1| pre-mRNA splicing factor RNA helicase PRP28, putative [Plasmodium
           vivax]
          Length = 1006

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 25/380 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + + +  
Sbjct: 586 SNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLAYVKQ 645

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 646 LPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEAQAFELR 705

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++GTPGR+ D +      ++    V+LDEAD M+D+GF D + FILD  P     
Sbjct: 706 KGVEIIIGTPGRIHDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTTNLK 765

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----------------- 225
               A            ++   +    ++      +   R  L                 
Sbjct: 766 SEDDALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAGKRS 825

Query: 226 ------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                      +    +  +        IVF + +       K +++  F+ VAL G  +
Sbjct: 826 IEQKLEFTTEGKKKQKLQEILEEYEAPIIVFVNQKKVADIIAKSISKMKFRAVALHGGKA 885

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R   L   ++G   + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRTGRAG
Sbjct: 886 QELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRTGRAG 945

Query: 340 RKGMSVFVIPQNMQRRAERL 359
            KGM++  + +        L
Sbjct: 946 MKGMAISFVTEQDSHLFYDL 965


>gi|73996610|ref|XP_862993.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 3 [Canis familiaris]
 gi|119578414|gb|EAW58010.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_a [Homo
           sapiens]
          Length = 634

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 210 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 269

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 270 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 329

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 330 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 389

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 390 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 449

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 450 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 509

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 510 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 569

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 570 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 604


>gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
          Length = 462

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 109/412 (26%), Positives = 199/412 (48%), Gaps = 16/412 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +  ++S  G+   T++Q  +L   L+ +D++  A+TGSGKT AFGL +  
Sbjct: 34  TFSSLGLCAELCASVSTLGWRAPTAIQSEVLPYALQGRDIIALAETGSGKTAAFGLPILQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    RF       AL +APTREL +Q+ +++  +    GV V   +GG+  + +   
Sbjct: 94  QLLQRTQRF------YALILAPTRELCLQISQQMLAMGGSLGVTVVTLVGGLDHNTQAIA 147

Query: 121 LQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L    H+VVG+PGR+ DH++      L    +  +   +    LD      +      SP
Sbjct: 148 LAKKPHVVVGSPGRVVDHLQQTKGFSLKSVKVLVLDEADRLLSLDFDAALQVLLEHVGSP 207

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ ++FSAT++  ++ L K   K  V++ + S+    S +    +LV    +   +  
Sbjct: 208 AERQTMLFSATMTTKVSKLQKASLKKPVKLEVNSKYDVASLLQQHFLLVPFKLKHTHLAA 267

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L +    + IVF +T A+       L    FQ V L G+++Q +R  AL   R      
Sbjct: 268 ALLHLSPSSVIVFTNTCANARTIALFLRHLGFQSVCLHGKMTQPQRIGALTKFRAAETSC 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT+V +RG+D+P +++VI+ ++  + +  +HR GRT RAGR G ++ ++ Q      +
Sbjct: 328 LVATEVGSRGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYDVEAYQ 387

Query: 358 RLFREANVSVVW-EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
           R+       +       + E +     +++L+    L S + + ++  D  L
Sbjct: 388 RIEHALGQKLDELTELTATEKVMPLH-EKVLE---ALRSAELEAREADDAAL 435


>gi|296117857|ref|ZP_06836440.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969088|gb|EFG82330.1| putative ATP-dependent RNA helicase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 450

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 181/370 (48%), Gaps = 5/370 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ I   L+++G  +   +QEA +   L  KD+L    TGSGKT  FGL +
Sbjct: 1   MTTFADLGLPRPIVSVLAQQGITSPFPIQEAAIPDALAGKDILGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L +APTRELA+Q+ + L+      G+ V   +GGV+++   
Sbjct: 61  IARL--AGSGASKPGRPRGLVLAPTRELAIQIQQRLDEPANAMGLRVLSVVGGVNINNHI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L     I+V TPGR  D +  K L++S      LDEAD+M D+GF   ++ +L  +P 
Sbjct: 119 RQLARPVDILVATPGRAQDLVNQKKLSLSDATLTALDEADQMADMGFLPQVKKLLALTPD 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L   +  D V  + A        + +    V   +  N +V  
Sbjct: 179 NAQRLLFSATLDGDVNKLVSRFMHDPVTHSTAPVQASVDTMKHYVFFVGEREDRNKVVLR 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L       + L G+  Q  RS  LQ   DG   V 
Sbjct: 239 IAAREGK-TIMFMRTKHGVDRQAKKLRRAGIPAMGLHGDKGQNTRSTTLQGFADGSVSVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++    +    +
Sbjct: 298 VATDIAARGIDVHDVSLVVHVDPPAEHKAYLHRAGRTARAGEAGSVVTLVMNEQRDEVAK 357

Query: 359 LFREANVSVV 368
           L  +A V   
Sbjct: 358 LIDKAGVDAE 367


>gi|307706950|ref|ZP_07643749.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
 gi|307617664|gb|EFN96832.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
          Length = 447

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 202/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  ++  T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFITPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  ETSD------SVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKANTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QLMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|300176667|emb|CBK24332.2| unnamed protein product [Blastocystis hominis]
          Length = 408

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 170/370 (45%), Gaps = 9/370 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + I   L E+G+   + VQ   +   L  KD+L  ++ G+GKT A+ +   + 
Sbjct: 36  FEKYGLKEEIMSVLCEKGWEKPSPVQSQTIPSILSGKDILARSKNGTGKTGAYVIPCMNQ 95

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + P RELA+Q  R +        V    C GG  +  +   L
Sbjct: 96  IDPKE------RVIQVLILVPARELALQTSRVVREFGKALKVDSMCCFGGQRLADDLYRL 149

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G H++VGT  R+ D  R    ++SH K +VLDEAD+ML   FR  +E ++   P + +
Sbjct: 150 RRGVHVLVGTAARILDITRRGHCDLSHCKYLVLDEADKMLSDNFRQVVEDLIAFLPAEHQ 209

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+ SAT    + + A  Y  + V +N          I    V +    + NA+  +   
Sbjct: 210 TLLLSATFPSTVRSFAAEYMHEPVMINTM-NELTLKGITQYYVYLEERQKVNALHTLFSK 268

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++ A V    K + +  +    +   + Q +R+        G AR  + T
Sbjct: 269 LEVNQSIIFCNSVARVELLAKKIIDLGYSCYYIHSRMEQDDRNKVFHNFSQGAARHLVCT 328

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARG+++  + +VI+ +L  + E  LHR GR+GR G  G++V  I    +     + +
Sbjct: 329 DLLARGLNVTTVNVVINFDLPQSSETYLHRIGRSGRYGHLGLAVNFITDKDKEVFFTIEQ 388

Query: 362 EANVSVVWEP 371
           E ++ V   P
Sbjct: 389 ELDIEVQPFP 398


>gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
 gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
           27244]
 gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
           19194]
          Length = 383

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 194/371 (52%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLKLHPQLKKAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   +V +  G     +++ 
Sbjct: 65  LLNNPIQEQRFRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKM 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +N   I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP K
Sbjct: 125 LDRNFVDIIVATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPSK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + + D++ R  +VA  D+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNVDVEQRVYVVAKEDKYKLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR       ++F + R  V R    L    ++V  LSGE++Q +R   L   + G+  +
Sbjct: 245 ILRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEIAQDKRLKMLDQFKQGKHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGAQGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGKKLP 375


>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
 gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
          Length = 790

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 202/402 (50%), Gaps = 7/402 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A+   GY+  T +Q + +   L  +D+   A TG+GKT A+ L     LL  
Sbjct: 164 NLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYMLPTVERLLYR 223

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 224 P--LNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNP 281

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I++S  K R+ ++
Sbjct: 282 DIVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQTML 341

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRY 241
           FSAT+S  +  LA       V+V + +  +   ++    + +      DR+  + +++  
Sbjct: 342 FSATMSEQVKDLAAVSLDKPVKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASLICR 401

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+    R   +L     +   L G L+QQ+R  +L+  ++ +  V IAT
Sbjct: 402 TFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIAT 461

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAGR G+SV +  +  ++  + + +
Sbjct: 462 DVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVKDIIK 521

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
            A  SV     P  E I +   +    +P   + +  ++ + 
Sbjct: 522 NAESSVKNRIIP-PEIIDKYRNKLTALEPEIQNILDEEQAER 562


>gi|118469425|ref|YP_886296.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170712|gb|ABK71608.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 502

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 127/365 (34%), Positives = 184/365 (50%), Gaps = 9/365 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + ++ +R
Sbjct: 15  DEIVRALAENGIEHPFAIQELTLPLALAGDDLIGQARTGMGKTYAFGVPLLHRVSSDENR 74

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRERRDLQ 122
                AP AL + PTREL +QV  +L                V    GG     +   L+
Sbjct: 75  P-LTGAPRALVVVPTRELCLQVYNDLAGAAKHLPTNDGRKFTVTSIYGGRPYEPQIEALR 133

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  +P  R+ 
Sbjct: 134 KGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILQLTPDSRQA 193

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R         H      A      D+   +  IL+
Sbjct: 194 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTAQYAYRAHALDKVELVSRILQ 253

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    +VF  T+ +  + +  LAE  F+V A+ G+L Q  R  AL+  R G   V +A
Sbjct: 254 ARGRGATMVFTRTKRTAQKVSDELAERGFKVGAVHGDLGQGAREKALKSFRTGEIDVLVA 313

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G+++ ++  +   R E + 
Sbjct: 314 TDVAARGIDIDDVTHVINYQCPEDEQAYVHRIGRTGRAGKTGVAITLVDWDELARWEMID 373

Query: 361 REANV 365
           +  N+
Sbjct: 374 KALNL 378


>gi|54297986|ref|YP_124355.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila str. Paris]
 gi|53751771|emb|CAH13194.1| hypothetical protein lpp2042 [Legionella pneumophila str. Paris]
          Length = 468

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 206/377 (54%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L +
Sbjct: 12  SFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           A  AL + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLD 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+
Sbjct: 126 SLRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+K + KD   V++ +   +     +   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQVERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++ ++     +R   +
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                  + W    ++E
Sbjct: 366 EDNYPHPIHWGNINALE 382



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  ++ G K K     ++  L + +G+   +IG I +    ++V +     D 
Sbjct: 391 PEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHHSQADK 447


>gi|328774195|gb|EGF84232.1| hypothetical protein BATDEDRAFT_84954 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 764

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/403 (29%), Positives = 187/403 (46%), Gaps = 21/403 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     E+L  RG V L  +Q A  +P ++  D+L  A+TG+GKT+AF L +   L  E
Sbjct: 147 NLSLSTIESLKARGIVQLFPIQAASFDPIIKGMDLLGRARTGTGKTLAFSLPMIEVLKRE 206

Query: 66  NDRF-----SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +           AP  L +APTRELA+QV RE + + +   +      GG     +   
Sbjct: 207 RESNRHLFSQRGRAPRVLIMAPTRELAMQVHREFDSISSG-ELKSTCAYGGSPYDSQCNA 265

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +++G  ++VGTPGRL DHI    L ++ L+ + LDEAD+MLD+GF + +E IL    +++
Sbjct: 266 MRDGIDVIVGTPGRLIDHIERGTLKLNQLRFICLDEADQMLDIGFAESMEKILQQVQEQK 325

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH---------------SDIDYRAVL 225
             L  +      + +                 N+                       +  
Sbjct: 326 SKLTDAPDHQVLLFSATMPVWIKQAVSKYMKPNKVTLDLIGTDKQKTSATVKHYAIASHW 385

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              S     IV I    GA   I+F  T+   +               L G++ Q++R  
Sbjct: 386 QNRSALLGDIVAIYGRGGAGRTIIFVETKGEANELAMNDKLVTMGTQVLHGDIQQKQREV 445

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            +Q  R+G+    I T+V ARG+D+P+++LVI+ E  S+ E+ +HRSGRTGRAG+ G+ V
Sbjct: 446 TMQGFREGKFTSLITTNVCARGVDIPEVDLVINCEPPSDVESYIHRSGRTGRAGKSGICV 505

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
                N +   + + R A V+ +   AP  + I    A   L+
Sbjct: 506 TFYKPNQEYALQNIARHAGVNFIKIGAPQPKDIVAARASDTLE 548


>gi|330014982|ref|ZP_08308018.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
 gi|328532472|gb|EGF59268.1| ATP-independent RNA helicase DbpA [Klebsiella sp. MS 92-3]
          Length = 457

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 200/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++TSVQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSMTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L + PTRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCPTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEIDTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G +   IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|227494914|ref|ZP_03925230.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831366|gb|EEH63749.1| ATP-dependent RNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 528

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 182/383 (47%), Gaps = 11/383 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  I   I +ALS +G      +Q   L   L  +D++  A+TG+GKT+ FGL   
Sbjct: 42  KTFADFGINTEICDALSAKGITYPFPIQALTLPVALAGRDIIGQAKTGTGKTLGFGLPTL 101

Query: 60  STLLAEND-----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
             +                 P A+ I PTREL  QV  +L     +T V +    GG + 
Sbjct: 102 MKVHGPASAKYATEVHYQGHPQAMVIVPTRELCKQVAADLRAAAKQTSVRITEIYGGAAF 161

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L  G  ++VGTPGRL D ++ K L +  +  VVLDEADEMLDLGF  D+E +L 
Sbjct: 162 EPQIDALTKGTDLIVGTPGRLIDLLKRKVLQLHGVNTVVLDEADEMLDLGFLPDVEILLS 221

Query: 175 SSPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
             P+ R+ ++FSAT+   I                     +      +          ++
Sbjct: 222 RVPQTRQTMLFSATMPGEIVALARRYMKQPTHIRAQEADDQGATVKTVKQVIYRCHALNK 281

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  IL+      A++F  T+ + +  ++ L+   F V +L G+L Q  R  A++  R
Sbjct: 282 IEVVARILQARERGLAVIFTKTKRTAATLSEDLSARGFAVASLHGDLGQGAREQAMRAFR 341

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG  G +V  +  +
Sbjct: 342 SGKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYLHRIGRTGRAGASGTAVTFVDWD 401

Query: 352 MQRRAERLFREANVSVVWEPAPS 374
              R   + +  N+ V  EP  +
Sbjct: 402 DVPRWGLISKALNLGVP-EPLET 423


>gi|50557160|ref|XP_505988.1| YALI0F28391p [Yarrowia lipolytica]
 gi|74659615|sp|Q6C024|PRP28_YARLI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49651858|emb|CAG78800.1| YALI0F28391p [Yarrowia lipolytica]
          Length = 575

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/408 (29%), Positives = 205/408 (50%), Gaps = 27/408 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
           + IP ++ + +S  GY   T +Q A +   L  +DV+  A+TGSGKT +F + L S +  
Sbjct: 168 KEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICE 227

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L + D  S  + P  L +APTRELA+Q+  E     A  G  V   +GG S   +   +Q
Sbjct: 228 LPKLDERSKVNGPYGLILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQ 287

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
            GA ++V TPGRL D I  + L ++    VV+DEAD M+D+GF + ++ +L S P     
Sbjct: 288 EGAELIVATPGRLLDVIDRRLLVLNQCCYVVMDEADRMVDMGFEEQVQKVLASLPSSNAK 347

Query: 178 ---------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                          + R+ +M++AT+  AI  LAK Y +    V I S  +  S +   
Sbjct: 348 PDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTVTQL 407

Query: 223 AVLVALSDRDNAIV--NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +   ++    +   I +       +VF + +      +  L    ++   + G   Q
Sbjct: 408 VEFLNTDEKRKRRLLDIISKRQYRPPIVVFLNYKRDCEAVSDALVAAGWRTAIIHGGKQQ 467

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  A+Q ++ G   V +ATDVA RG+D+P++ LV++ ++++N E+  HR GRTGRAG+
Sbjct: 468 EQREQAVQHLKRGAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGK 527

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +G +V  + Q        L +  + S   E +P+ + +    A R+ +
Sbjct: 528 RGTAVTFLGQEDDDVLFELKQMISRS---EASPNNQELSRHPAARMKK 572


>gi|149919487|ref|ZP_01907967.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
 gi|149819612|gb|EDM79039.1| DEAD/DEAH box helicase [Plesiocystis pacifica SIR-1]
          Length = 1390

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 226/463 (48%), Gaps = 27/463 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  A+   G+   T VQ       ++  DVLV +QTGSGKT AF L   +      
Sbjct: 163 LPEHVRNAVDAAGWTAPTKVQARTYETMIQGTDVLVQSQTGSGKTGAFCLPWLANRFQPG 222

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  +  +    + + PTRELA QV  EL  L  +T V V    GG +++ +   L  G H
Sbjct: 223 D--AAETGVQLIVLLPTRELAKQVCNELVRLAIETPVDVLPVYGGTAMNPQLDALARGVH 280

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            VVGTPGR+ DHIR K L++S ++ VVLDE DEML +GF +DI  IL + PK+R+  +FS
Sbjct: 281 AVVGTPGRVLDHIRRKSLDLSKVRTVVLDECDEMLSMGFLEDIRAILRACPKERQTCLFS 340

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  +A+   ++   + ++ ++   ++I +       S +   +V+++       
Sbjct: 341 ATVPRDIARIARRDMREPEHIVLSGDDIAAAEIYHGFYSTGGSIKTRDLVDMIIVEDPAA 400

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           A+VFC+TR        VL ++ +   ALS +L+Q  R + + + RD + R  +ATDVAAR
Sbjct: 401 AMVFCNTREETRLVASVLQKNGYSAHALSSDLTQAAREHVMGLFRDRKLRFLVATDVAAR 460

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN-V 365
           GID+  +  VI+     N EN +HR+GRTGRAGR G+++ ++          L R    +
Sbjct: 461 GIDVSHVSHVINYSFPENAENYVHRTGRTGRAGRPGVALSIVSPLEIGAFYTLTRAYKSI 520

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL------AKHDP--EKIA 417
                  P  + +  R  +      + LD +  D +K V             DP  +++ 
Sbjct: 521 QFTERKLPPKDELAARRTE------VTLDRLSHDFQKPVSPEWLLLARRLLADPRGDRVV 574

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
           A  L           E         ++R R+D      G GS 
Sbjct: 575 AYLLN----------EAVEAKAKQDKERAREDREDGDEGEGSE 607



 Score = 43.8 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 401  KKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            K   +V  +K+     AA F R   A   A ++ TP    +GR+    +  A        
Sbjct: 1146 KDFWEVWASKYS----AADFERDEDARDEANDD-TPSEADTGREPAAAEDTAAIPSLPDS 1200

Query: 461  DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS----AD 516
                     SL++G +   ++  +  +L R++G++ +++  + V+ + +   +       
Sbjct: 1201 SGDDTLIQVSLNLGRRHGHKSADVRALLKRTTGLHGKAVRDLTVRDETSLFRMETGLFET 1260

Query: 517  GVDLLRRTVKLDKGIQL-KYLGGEKPDFR 544
              + L  T   +  + L     G+ P  R
Sbjct: 1261 VAERLAGTTVGEVALALSSVDDGDAPALR 1289


>gi|224056049|ref|XP_002193612.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Taeniopygia
           guttata]
          Length = 858

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 210/418 (50%), Gaps = 13/418 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +++ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF +     +    
Sbjct: 374 VSENTLKGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIY--K 431

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    + ++PTRELA+Q    L+ L         + +GG +   E + L NG +
Sbjct: 432 LKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTYGLIMGGSNRSAEAQKLGNGIN 491

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++F
Sbjct: 492 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLF 551

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LAK   K         +N++ + +D      V+     R   +   L+ +
Sbjct: 552 SATQTRKVEDLAKISLKKEPLYVGVDDNKETATVDGLEQGYVVCPSEKRFLLLFTFLKKN 611

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TD
Sbjct: 612 RKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQTKRTTTFFQFCNAESGILLCTD 671

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLF 360
           VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R  
Sbjct: 672 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFL-RYL 729

Query: 361 REANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           ++A V +         +  I+ +  +++++   FL     +  K        H  ++I
Sbjct: 730 KQARVPLSEFEFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKAYIRAYDSHSLKQI 786



 Score = 93.1 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + +++ G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF +     +    
Sbjct: 138 VSENTLKGINDMGFTHMTEIQHKSIKPLLEGRDILAAAKTGSGKTLAFLIPAVELIY--K 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
            +F P +    + ++PTRELA+Q    L+ L        
Sbjct: 196 LKFMPRNGTGVIILSPTRELAMQTYGVLKELMNHHVHTY 234


>gi|237799853|ref|ZP_04588314.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022708|gb|EGI02765.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 484

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 113/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 161 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 220

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 221 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 280

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  +   V I S N    +++     VA +D+   + N++  
Sbjct: 281 TLLFSATFTEDVMNLAKQWTTEPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 341 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 401 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 460

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 461 KLGRKISCETPPT 473


>gi|17510559|ref|NP_490891.1| hypothetical protein Y71G12B.8 [Caenorhabditis elegans]
          Length = 763

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/491 (24%), Positives = 220/491 (44%), Gaps = 35/491 (7%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  N+ + I +A S  GY + T +Q+A +   L  KD+   A TG+GKT AF L +  
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILE 208

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++    R   AS    L + PTRELA+QV +    L     + V +C GG+ +  +   
Sbjct: 209 RMIY---RPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAA 265

Query: 121 LQNGAHIVVGTPGRLCDHIR-------------------------GKGLNISHLKAVVLD 155
           L++G  +VV TPGRL DH+                           K   I + + +VLD
Sbjct: 266 LRSGPDVVVATPGRLIDHLHNSPSFNLSNIEVFFKTPNIPPKKNSRKICKIPNFQVLVLD 325

Query: 156 EADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
           EAD ML+  FRD +  ++    + R+ L+FSAT++  I  LA    +  V++ I      
Sbjct: 326 EADRMLEEAFRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINENTDT 385

Query: 216 HSDIDYRAVLV---ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
              +    + +     +DR+  +  ++      N IVF  T+    R   +L     +V 
Sbjct: 386 ALKLRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLGIKVG 445

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            +   L+Q +R  +L   +     V ++TD+A+RG+D+  ++ VI+  +  + +  +HR 
Sbjct: 446 QMQSSLTQGQRIESLSKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRV 505

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           GRT RAG+ G S+ ++ ++ ++  + +        + +   + E + E   +RI +    
Sbjct: 506 GRTARAGKAGRSISLVGEDERKLLKEIVNSNADRTLKQRLVAPEVV-EAYRRRIDELEET 564

Query: 393 LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS-GRDRFRDDSR 451
           +  I  +++   ++ +A+    K           G  A   +  +      + R R++ R
Sbjct: 565 IQQIDEEDRAEKELRIAEASMAKTQNALEVGENGGAPAERRVWMMKESQIEKQRKREEKR 624

Query: 452 AFKVGGGSRDN 462
             KV    +  
Sbjct: 625 QMKVDARKKAE 635


>gi|226490952|ref|NP_001152536.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|195657271|gb|ACG48103.1| ATP-dependent RNA helicase DDX23 [Zea mays]
 gi|224030151|gb|ACN34151.1| unknown [Zea mays]
          Length = 758

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 347 ELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 406

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  I
Sbjct: 407 EENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEI 466

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 +
Sbjct: 467 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 526

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S+
Sbjct: 527 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESE 586

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   
Sbjct: 587 KMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKSGFRVTTLHGGKSQDQREISLDGF 646

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 647 RNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGVATSFLTL 706

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 707 ENTDIFFDLKQMLIQSNSPVPPE 729


>gi|70733057|ref|YP_262830.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
 gi|68347356|gb|AAY94962.1| ATP-independent RNA helicase DbpA [Pseudomonas fluorescens Pf-5]
          Length = 461

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 210/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL I PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 68  INP------RYFGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  +VLDEAD MLD+GF D IE I++ +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA  + +D   V  A      + I+ R   ++  +R +A+  +L 
Sbjct: 182 QTLLFSATYPVGIKQLASKFMRDPQTV-KAEAFHDDTQIEQRFYEISPEERMSAVTKVLH 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 241 HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +   RA+ + 
Sbjct: 301 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE 360

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     + W+   ++++         LQ P+    I G  K  V 
Sbjct: 361 QLQKAPLNWDQVDNLKS----QGGAPLQPPMSTLCIAGGRKDKVR 401



 Score = 62.3 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EV 513
           G        S   ++ G K K     ++  L   +GI    +G I +    ++V     V
Sbjct: 379 GGAPLQPPMSTLCIAGGRKDKVRPGDILGALTGDAGIPGAQVGKIAIFDFQSYVAVERTV 438

Query: 514 SADGVDLLRRTVKLDKGIQLKYL 536
               +  L       + ++++ L
Sbjct: 439 VMQALQRLNNGKIKGRSLRVRVL 461


>gi|10039341|dbj|BAB13313.1| Vasa-related protein PlVAS1 [Dugesia dorotocephala]
          Length = 573

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 175/381 (45%), Gaps = 17/381 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA-----S 60
            +P+ + E + +  YV LT VQ+  +    R +D++  AQTGSGKT AF + +      +
Sbjct: 119 ELPEFLMENIRDMKYVKLTPVQKYAVPIIDRGRDLMACAQTGSGKTAAFLIPIIKGLHGT 178

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  ++   S  + P AL + PTREL  Q+      L   + +  A   GG+ +++ RR+
Sbjct: 179 VLETDSSNTSSTAFPRALIMTPTRELCRQIFTAARLLCRGSNIRCAYMYGGIEMNKSRRN 238

Query: 121 LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +Q     I+V TPGRL   +    +++ ++K  VLDEAD MLD     ++   +     +
Sbjct: 239 IQATGCDILVATPGRLIHFLELVWVSLRYIKYFVLDEADRMLDEEGFYEVVNKIYKEAHQ 298

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-------RQHSDIDYRAVLVALSDRD 232
                 S  +S    T     Q  A R+               + D+    +     D+ 
Sbjct: 299 SGDADRSIHLSMFSATFPNEIQTLASRLLSNYLFLAVGVVGSANCDVKQEIIRAEQRDKV 358

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            + + +++    +  ++F  ++     F   L    F+   + G+  Q++R +AL   + 
Sbjct: 359 TSAIELIKTIPDEKTLIFVESKRMADFFGIKLGYLGFKATTIHGDREQEQRESALNDFKS 418

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           GR    +AT+VAARG+D+P ++ VI+ ++    +  +HR GRTGR G  G ++     Q 
Sbjct: 419 GRINFMVATNVAARGLDIPKVDNVINIDMPDTIDTYVHRIGRTGRCGNVGRAISFFDDQK 478

Query: 352 MQRRAERL---FREANVSVVW 369
               A  L    +EAN  V  
Sbjct: 479 DLGLAGALVGKLQEANQPVEQ 499


>gi|323494307|ref|ZP_08099419.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311470|gb|EGA64622.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 447

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 187/373 (50%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 12  LDNRLLKNLKHFDFKKATEIQQQAIPVAIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P A+ +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 70  TKAFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDATLIVGGENFNDQVKALRRYPK 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LM 184
            +V TPGRL DH+  + L +  L+ +VLDEAD MLDLGF  ++  I +++  +RR   + 
Sbjct: 130 FIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIVNILRYHG 243
            +      +  +A        R+ I + + +H DI  +  L      ++  +  +L+   
Sbjct: 190 SATLDHAEVNDIAFEMLDAPKRIAIGAGSEEHKDITQKFYLCDHLDHKEAILERVLQEAD 249

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TRA   R T  L E   + VALSG L+Q +R+  +        ++ + TD+
Sbjct: 250 YKQLIIFTATRADTERLTAKLNEKKLKAVALSGGLTQTQRNTIMSQFERAVFKILVTTDI 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V++ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 310 ASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAFL 369

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 370 QQDLSFSELEGLK 382


>gi|270293066|ref|ZP_06199277.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
 gi|270279045|gb|EFA24891.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
           M143]
          Length = 447

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 114/462 (24%), Positives = 201/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I +AL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIEKALEELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  ETSD------SVQAVITAPSRELATQIYQAARQIVAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 AISQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMERIKTKTVISDTIDNWLISTKGRDKNAQIYELTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 VMQPYLAMIFVNTKTRADELHAYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFIP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRADRKAKR 444


>gi|193290168|ref|NP_001123270.1| pitchoune [Nasonia vitripennis]
          Length = 643

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/499 (23%), Positives = 227/499 (45%), Gaps = 24/499 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + + +   +A++E G+ ++T +Q   + P L  +D++ +A+TGSGKT++F +     +  
Sbjct: 146 DKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSFLIPAVELIY- 204

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + I+PTREL++Q    L+ L         + +GG S   E + L  G
Sbjct: 205 -KLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLSKG 263

Query: 125 AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH          +L+ +++DEAD +LD+GF ++++ I++  PK+R+ +
Sbjct: 264 VNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKRRQTM 323

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +     L     K         + ++ + ++      V      R   +   L+
Sbjct: 324 LFSATQTKKTEALTTLAVKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLFTFLK 383

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+++ G+  Q +R+       + ++ + + 
Sbjct: 384 KNRQKKVMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLC 443

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++         R 
Sbjct: 444 TDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFL-RY 502

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKH------ 411
            ++A V V        + A  +   ++++    FL+ S +   K  V    + H      
Sbjct: 503 LKQARVPVNEFEFSWNKIADIQLQMEKLISKNYFLNMSAKEAFKAYVRAYDSHHLKQIFD 562

Query: 412 ----DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG---GSRDNFK 464
               D  K+A  F       +     ++  S    R           + G   G+    +
Sbjct: 563 VETLDLTKVAKSFGFTTPPAVDLKVGVSKDSRPRKRLGGGGYGYFKGLNGEQPGAARRAE 622

Query: 465 GSSWFSLSVGSKQKAEARW 483
            +  F   VG +  ++ R 
Sbjct: 623 RTKTFR-QVGKRNHSDRRQ 640


>gi|134085663|ref|NP_001076996.1| nucleolar RNA helicase 2 [Bos taurus]
 gi|133778115|gb|AAI23649.1| DDX21 protein [Bos taurus]
 gi|296472163|gb|DAA14278.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Bos taurus]
          Length = 784

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/581 (23%), Positives = 241/581 (41%), Gaps = 38/581 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLVEK 248

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 249 LLGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLA--VACFYGGTPYGGQIERM 306

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 307 KNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 366

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 367 EDNPQTLLFSATCPYWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++ +A          G++ Q++R   L+  R
Sbjct: 427 VIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQDAQSLH-GDIPQKQREITLKGFR 485

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 486 NGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 545

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 546 EEYQLAQVEQKAGIKFKRIGVPSPTEIIKASSKDAIR---LLDSVPPTAIGHFKQSAEKL 602

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 603 IEEKGAVEALAAALAHISGATSVDQRSLINSEAGF--VTMILRCSIEMPNISYAWKELKE 660

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    ++ + ++  L    G+                 ++    V  ++      +  
Sbjct: 661 QLGEDIDSKVKGMV-FLKGKQGVC---------------FDIPTASVTEVQEKWHDSRRW 704

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +  G+++   Q    + F+  +  ++
Sbjct: 705 QLSVAT-EQPELEGPR-EGYRNFRGQREGNRGFRGQREGNR 743


>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
          Length = 755

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 240 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 299

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 300 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 356

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 357 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 416

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 417 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 476

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 477 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 536

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 537 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 594

Query: 359 LFREANVSVVWEPA--------PSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA 409
           + R A  SV    +         +V+ ++  +  ++++     ++ I  +EK+  ++L A
Sbjct: 595 IVRAAIKSVEENKSLTQGKALGXNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRA 654

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 655 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 714

Query: 463 FKGSSW-FS 470
               +  + 
Sbjct: 715 DGNGARSYR 723


>gi|225427683|ref|XP_002273691.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 797

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 195/386 (50%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 299 LSTELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 358

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 359 PMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 418

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 419 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 478

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++ 
Sbjct: 479 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMMK 538

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++   +  +L   G K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L
Sbjct: 539 ESEKMFKLQKLLDELGDKTAIVFINTKKSADNLAKGLDKAGYRVTTLHGGKSQEQREISL 598

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 599 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 658

Query: 348 IPQNMQ---RRAERLFREANVSVVWE 370
           +  +        +++  + N  V  E
Sbjct: 659 LTLHDSDVFYDLKQMLIQNNSPVPPE 684


>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
           [Acyrthosiphon pisum]
          Length = 641

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 176/384 (45%), Gaps = 15/384 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + +V+   L+E  Y N T +Q+  +   +  KD++ SAQTGSGKT AF L +
Sbjct: 221 ITSFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPI 280

Query: 59  ASTLLAENDRFS---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            ++L++E            P  L ++PTRELA Q+      L   T +      GG +V+
Sbjct: 281 LNSLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSNGTSIRCRALYGGTAVY 340

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R  + +G HI+V TPGRL D +    +  S L+ +VLDEAD MLD+GF   I+ I   
Sbjct: 341 HQREKILSGVHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRMLDMGFTPAIQCIFSD 400

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR------QHSDIDYRAVLVALS 229
           +         +   S  +    +   K  ++ +  S                   +   S
Sbjct: 401 NTMVSSAERSTLMFSATLPIDVQQIAKSYLKPDYISVAVGEVGGACKDVTQTFVEVNKFS 460

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            ++  +  +   +  +  IVF   +         L+E  +   ++ G+  Q ER  AL+ 
Sbjct: 461 KKNELVALLNETNDCQGTIVFVEQKRQADFIAAFLSELNYPTTSIHGDREQPEREKALRD 520

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            +  + +V +AT VAARG+D+  +  V++ +L    E  +HR GRTGR G  G +V    
Sbjct: 521 FKTKKMKVLVATAVAARGLDIMGVTTVVNFDLPKTIEEYVHRIGRTGRLGNSGRAVSFYD 580

Query: 349 PQNMQRRAERL---FREANVSVVW 369
           P N    A  L    + A+ ++  
Sbjct: 581 PDNDSAMAPYLVNTLKRADQNIPE 604


>gi|156375300|ref|XP_001630019.1| predicted protein [Nematostella vectensis]
 gi|156217032|gb|EDO37956.1| predicted protein [Nematostella vectensis]
          Length = 411

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 178/362 (49%), Gaps = 10/362 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L+++ +   T +Q   L+  +  +D++  A+TGSGKT+A+ L L   L  +
Sbjct: 46  NLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTK 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +P   P+AL + PTREL  QV   +  +            GGV V  +   L+ GA
Sbjct: 106 APS-NPGDTPVALILTPTRELMQQVFMNVSEMLDVIRCPGNPVCGGVPVSTQTIALREGA 164

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL---DSSPKKRRM 182
            +VV TPGRL D  +   L +  +  +V+DEAD ML +G  + +  I+     + + R+ 
Sbjct: 165 DVVVATPGRLLDLCKRGALCLDKITYLVMDEADRMLGMGMEEQLRKIVGLATGTSRARQT 224

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L++SAT+  ++  LA++   + + + +         +    V +    +   ++  LR  
Sbjct: 225 LLWSATLPESLERLARSAVLNPITIQVGPGGLIAPSVQQNVVFLYHYQKPQKLLETLRTT 284

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF S+  +V   T++L +  F    L  E  Q  R   ++  RDG+  + +ATD
Sbjct: 285 PYPPVIVFTSSIQNVDYVTELLKQEQFHASGLHSEKPQDYRFKLVKAFRDGKVDILVATD 344

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP------QNMQRRA 356
           VA+RG+D P++  VI+ +L    E  +HR GRTGR G  G++   +       + ++   
Sbjct: 345 VASRGLDFPEVTHVINYDLPDTIECYIHRCGRTGRIGHHGIATSFLTLDCKIAEELKEML 404

Query: 357 ER 358
           ER
Sbjct: 405 ER 406


>gi|294867179|ref|XP_002764990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239864870|gb|EEQ97707.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 580

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/388 (26%), Positives = 178/388 (45%), Gaps = 22/388 (5%)

Query: 1   MKIFE--NIPQVIGEALSER---GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           +  FE  N P  +   L++R   G  + +++Q          +D++  A+TGSGKT+A+ 
Sbjct: 181 VTTFEESNFPDYLISTLNQRFPGG--HPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYL 238

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           +     + A+ +       P+AL + PTREL+ Q+  E         + +A   GG    
Sbjct: 239 MPAIVHIAAQPE-VEQGDGPVALVLVPTRELSQQLLAESMLQIGSVPLRIACVYGGQPKR 297

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           ++ R+L     ++V TPGRL D ++    N+  +  +V+DEADEML LGF   ++ I  +
Sbjct: 298 QQERELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEMLALGFGRQLDSICSA 357

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R+ LM+SAT    I  LA+ + ++             +        V L       
Sbjct: 358 IRPDRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAACHQVTQDFVFLEHPGMKQ 417

Query: 236 VNILRYHGAK-----------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              +     K            A++FC+T+  V + T++L    +  V +  +  Q ER 
Sbjct: 418 KEFMDNVIPKVWNVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNAVCIHSDKEQSERE 477

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
                 RDG  R+ +AT++  RG+D+ +++ VI+ ++  N E  +HR GRT RAG  G S
Sbjct: 478 WVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRTARAGAHGTS 537

Query: 345 VFVIPQNMQRRAE---RLFREANVSVVW 369
           + +      R A+    +  EA  ++  
Sbjct: 538 ITLFTAQEGRHAKDLVDILNEAGQNIPE 565


>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
          Length = 468

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 205/377 (54%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L+L +
Sbjct: 12  SFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDLIAQAKTGSGKTAAFALSLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           A  AL + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFAVQALVLCPTRELAEQVSQAIRRLACFMPNVKIINLSGGIPMQPQLD 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+
Sbjct: 126 SLRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+K + K+   V + +   +     +   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKQLSKQFMKNPKEVYVETPLDEIDIEQHFYEVTKQTQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++ ++     +R   +
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                  + W     +E
Sbjct: 366 EDNYPHPIHWGNINELE 382



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  ++ G K K     ++  L + +G+   +IG I +    ++V +     D 
Sbjct: 391 PEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHRSQADK 447


>gi|194468573|ref|ZP_03074557.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194454937|gb|EDX43776.1| ATP-dependent RNA helicase RhlB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 421

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 113/365 (30%), Positives = 185/365 (50%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + EAL ++G+ N T +Q   L   L  + V   AQTG+GKT+AF  +    LL+  
Sbjct: 16  LHPQVVEALEKKGFYNCTPIQALALPLTLAGRYVAGQAQTGTGKTMAFLTSTFHYLLSHP 75

Query: 67  D-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  + P AL +APTRELAVQ+  + E L   TG+ + +  GG    ++ + L++G 
Sbjct: 76  AIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRML 183
            I++GT GRL D+ +   +N+  ++ VVLDEAD M DLGF  DI ++    P   +R  +
Sbjct: 136 DILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +A  V +  E +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+         LA    +V  L+G+++Q++R   L     G   + +ATDV
Sbjct: 256 PDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYI 375

Query: 364 NVSVV 368
             S+ 
Sbjct: 376 GHSIP 380


>gi|187779628|ref|ZP_02996101.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
 gi|187773253|gb|EDU37055.1| hypothetical protein CLOSPO_03224 [Clostridium sporogenes ATCC
           15579]
          Length = 421

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 196/369 (53%), Gaps = 8/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L +      T +QE  +   +  KD++  ++TG+GKT+A+ L +   +  E
Sbjct: 9   NLEPKLIEGLKKLNINIPTEIQEKTIPLAMENKDIIGQSETGTGKTLAYLLPIFKKINTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQN 123
                      A+ +APT ELA+Q+  E++ + + + +       IG  ++ R+   L+ 
Sbjct: 69  KREM------QAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKE 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HI+VG+PGR+ + I+ K +    +K +V+DE D++LD      ++ ++ ++ ++R+++
Sbjct: 123 KPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKDVIKATLRERQLM 182

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI+ +   +AK+  K+   V +  +N  + +I +  +     +R   +  ++    
Sbjct: 183 LFSATITESTLNIAKDLMKEPQIVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATN 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T  L  H  +   + G   +++R  AL+  R G+ ++ +++D+
Sbjct: 243 PKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRLGKIQILVSSDL 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+ D+  + + +L  NP+  LHR GRTGRA ++G ++ +I +       +  +E 
Sbjct: 303 SARGLDVKDVTHIFNLDLPENPKEYLHRVGRTGRASKEGTAISIITEKEIPLIRKYEKEF 362

Query: 364 NVSVVWEPA 372
           N+++  +  
Sbjct: 363 NINIEEKKI 371


>gi|313202589|ref|YP_004041246.1| dead/deah box helicase domain protein [Paludibacter propionicigenes
           WB4]
 gi|312441905|gb|ADQ78261.1| DEAD/DEAH box helicase domain protein [Paludibacter propionicigenes
           WB4]
          Length = 443

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 188/385 (48%), Gaps = 9/385 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   + NI   +  ALS+ G    T++QE      +  KD++  AQTG+GKT+A+ L   
Sbjct: 1   MTFTDFNINSPLLNALSDLGLTQPTTIQEKAYPVIMSGKDMVGIAQTGTGKTIAYLLPCL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                   +F+    P  L + PTREL +QV  ++E L     V V    GGV++ R+  
Sbjct: 61  -----RQWKFTKEKHPQILIVVPTRELVIQVVEQVEKLTTYMSVRVVGVYGGVNMIRQTP 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  ++V TPGRL D      L +  +K  V+DE DEML+LGFR  +  I+D  P K
Sbjct: 116 LVVAGVDVLVATPGRLLDLALNGSLKLKSIKRFVIDEVDEMLNLGFRPQLVRIIDLLPTK 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ LMFSATIS  +  L  ++  + + +  A       +I      V        ++  L
Sbjct: 176 RQNLMFSATISEELKDLVHDFFVEPLEIEAAPTGTPLENIKQIGFRVPNFYTKVNMLEFL 235

Query: 240 RYHGAKN--AIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +  +    +VF ST+      + ++ ++   Q   +    SQ  R  +++  ++   R
Sbjct: 236 LNNHPEFSKVLVFTSTKKLADALYDEIASKFPGQFGLIHSNKSQNNRFESMRGFKESEYR 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+ ARG+D+ D+  V++ ++   PEN +HR GRTGRA +KG+++  I +  +   
Sbjct: 296 VLIATDIVARGLDISDVSHVVNFDVPEVPENYMHRIGRTGRADKKGVALTFITKADKEYR 355

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
           E +    N  +     P    + + 
Sbjct: 356 EAIEALMNKKIPMTAMPEEVEVSKE 380


>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase-like [Thiomicrospira crunogena XCL-2]
 gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
          Length = 401

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 186/378 (49%), Gaps = 7/378 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++   +  A+ E+ Y   T +Q   +   L  KDVL  A TG+GKT AF L    
Sbjct: 2   TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +     P+  P  L +APTRELA Q+ + ++ L A       V  GG +  ++   
Sbjct: 62  FLLDDPR---PSRKPRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVTGGFASDKQLEI 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ+   I+V TPGRL + +  + +++S ++ +++DEAD MLD+G   D+  ++++ P   
Sbjct: 119 LQSKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALIEAIPGDF 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           +   FSAT++ +  T       D+  +   +   + S+   + V      + +   +  I
Sbjct: 179 QAACFSATLAGSGITKFAEEVLDSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLKAI 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L     ++AIVFC+ +         L         L G+  Q +R    Q  + G+ +V 
Sbjct: 239 LEDETCQSAIVFCNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVL 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ ++  VI+ ++    +  +HR GRTGRA + G+++ ++ ++     +R
Sbjct: 299 VATDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVERHDITNLQR 358

Query: 359 LFREANVSVVWEPAPSVE 376
           +      S+       +E
Sbjct: 359 IEYHLQQSLPVSKIKGLE 376


>gi|13399860|pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
 gi|13399861|pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 367

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 119/357 (33%), Positives = 191/357 (53%), Gaps = 14/357 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  A+  +G+   T +Q  ++   L  E +++  A+TGSGKT +F + L   +  
Sbjct: 12  NLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE 71

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            N          A+ + PTRELA+QV  E+E L     + +A   GG +++ + + L   
Sbjct: 72  NN-------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KN 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A+IVVGTPGR+ DHI    LN+ ++K  +LDEADE L+ GF  D+E IL++  K +R+L+
Sbjct: 124 ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKDKRILL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LAK Y  D   +       + +    ++ +    +     +  L  +  
Sbjct: 184 FSATXPREILNLAKKYXGDYSFI-----KAKINANIEQSYVEVNENERFEALCRLLKNKE 238

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VFC T+         L +  F+  A+ G+LSQ +R   +++ +  + R+ IATDV 
Sbjct: 239 FYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVX 298

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +RGID+ DL  VI+  L  NPE+  HR GRTGRAG+KG ++ +I +   ++   + R
Sbjct: 299 SRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355


>gi|228939265|ref|ZP_04101858.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972144|ref|ZP_04132760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978757|ref|ZP_04139128.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228781018|gb|EEM29225.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           Bt407]
 gi|228787628|gb|EEM35591.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820460|gb|EEM66492.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939841|gb|AEA15737.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 389

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + EA  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQEAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|124506289|ref|XP_001351742.1| snrnp protein, putative [Plasmodium falciparum 3D7]
 gi|23504671|emb|CAD51549.1| snrnp protein, putative [Plasmodium falciparum 3D7]
          Length = 1123

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 25/380 (6%)

Query: 5    ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  
Sbjct: 703  SNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQ 762

Query: 65   END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                   +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 763  LPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELR 822

Query: 123  NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             G  IV+GTPGRL D +      ++    V+LDEAD M+D+GF D + +ILD  P     
Sbjct: 823  RGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYILDKIPTSNLK 882

Query: 183  LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD------------ 230
                A            ++   +    ++      +   R  L A +             
Sbjct: 883  SEDDALALQEEMMTKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRS 942

Query: 231  -----------RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                       +    +  +        IVF + +      +K + +  ++ VAL G  +
Sbjct: 943  IEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSITKMKYKAVALHGGKA 1002

Query: 280  QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
            Q+ R   L   ++    + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRTGRAG
Sbjct: 1003 QEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAG 1062

Query: 340  RKGMSVFVIPQNMQRRAERL 359
             KG+++  I ++       L
Sbjct: 1063 MKGLAISFITEHDSHLFYDL 1082


>gi|145974737|gb|ABQ00072.1| PL10A [Fenneropenaeus chinensis]
          Length = 660

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 123/407 (30%), Positives = 193/407 (47%), Gaps = 39/407 (9%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +I   ++I + +S   Y   T VQ+  L   L ++D++  AQTGSGKT AF + +
Sbjct: 218 INTFADIKLTEIIKQNISMARYDRPTPVQKYALPFILAKRDLMACAQTGSGKTAAFLVPI 277

Query: 59  ASTLLAE--------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +  +        N R      PL+L +APTRELA Q+  E      +  V   V  G
Sbjct: 278 LNQIYEQGPVQVKNNNPRGRNKQYPLSLILAPTRELATQIYEEARKFSYRARVRPCVVYG 337

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G  V  + RDL  G H++V TPGRL D I    + + + K +VLDEAD MLD+GF   I 
Sbjct: 338 GADVVSQMRDLSRGCHLLVATPGRLADMIDRGKIGLDYCKYLVLDEADRMLDMGFEPQIR 397

Query: 171 FILDSSPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I++             MFSAT    I  LA+++  + + + +        +I  + V V
Sbjct: 398 RIVEEDNMPPTGQRQTLMFSATFPKEIQRLAQDFLDNYIFLAVGRVGSTSENITQKIVWV 457

Query: 227 ALSDRD----------------------NAIVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
           +  D+                          + +         +VF  T+       + L
Sbjct: 458 SEDDKRSFLLDILNAAGLDRATEANKDEKMAMGVPPRREESLTLVFVETKKGADALEEFL 517

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
             H + V ++ G+ SQ+ER +AL++ R G+  + +AT VAARG+D+P ++ VI+ +L S+
Sbjct: 518 YRHGYPVTSIHGDRSQREREDALRVFRSGQCPILVATAVAARGLDIPHVKHVINFDLPSD 577

Query: 325 PENLLHRSGRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVV 368
            E  +HR GRTGR G  G++        +NM R    L +EA   + 
Sbjct: 578 IEEYVHRIGRTGRMGNLGLATSFFNDKNRNMVRDLVELLQEAKQELP 624


>gi|71995514|ref|NP_001021793.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|51988117|gb|AAU20831.1| Vasa- and belle-like helicase protein 1, isoform c, partially
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 660

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 169/379 (44%), Gaps = 18/379 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA    
Sbjct: 148 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 207

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSVHRER 118
                A         P AL ++PTRELA+Q+ +E      K+ +  A+  G   +   + 
Sbjct: 208 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQV 267

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----IL 173
             L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I       + 
Sbjct: 268 NRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 327

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             + +   M   +      +                   +   +       +  +  R N
Sbjct: 328 PKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSN 387

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L++ R G
Sbjct: 388 LMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSG 447

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++        +
Sbjct: 448 QCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 507

Query: 354 ---RRAERLFREANVSVVW 369
              R  + L  E+N  V  
Sbjct: 508 GIGRDLKNLIVESNQEVPE 526


>gi|17510307|ref|NP_491112.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|14574398|gb|AAK68520.1|AC024810_19 Vasa- and belle-like helicase protein 1, isoform b, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 644

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 169/379 (44%), Gaps = 18/379 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA    
Sbjct: 132 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 191

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSVHRER 118
                A         P AL ++PTRELA+Q+ +E      K+ +  A+  G   +   + 
Sbjct: 192 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQV 251

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----IL 173
             L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I       + 
Sbjct: 252 NRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 311

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             + +   M   +      +                   +   +       +  +  R N
Sbjct: 312 PKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSN 371

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L++ R G
Sbjct: 372 LMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSG 431

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++        +
Sbjct: 432 QCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 491

Query: 354 ---RRAERLFREANVSVVW 369
              R  + L  E+N  V  
Sbjct: 492 GIGRDLKNLIVESNQEVPE 510


>gi|17510309|ref|NP_491113.1| Vasa- and Belle-like Helicase family member (vbh-1) [Caenorhabditis
           elegans]
 gi|7332077|gb|AAF60764.1| Vasa- and belle-like helicase protein 1, isoform a, confirmed by
           transcript evidence [Caenorhabditis elegans]
          Length = 641

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 169/379 (44%), Gaps = 18/379 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L +   +LA    
Sbjct: 129 PAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLPIIQHILAGGPD 188

Query: 69  FSPASA---------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSVHRER 118
                A         P AL ++PTRELA+Q+ +E      K+ +  A+  G   +   + 
Sbjct: 189 MVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRENYRDQV 248

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----IL 173
             L+ G HI++ TPGRL D I    + ++  + +VLDEAD MLD+GF   I       + 
Sbjct: 249 NRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEADRMLDMGFEPQIRKIVGQGMP 308

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
             + +   M   +      +                   +   +       +  +  R N
Sbjct: 309 PKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVGSTSENIEQRLLWVNEMEKRSN 368

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  ++  H     +VF  T+   +     L     + V++ G+L Q ER   L++ R G
Sbjct: 369 LMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSG 428

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +AT VAARG+D+P++  VI+ +L  + +  +HR GRTGR G  G++        +
Sbjct: 429 QCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIATSFFNDKNR 488

Query: 354 ---RRAERLFREANVSVVW 369
              R  + L  E+N  V  
Sbjct: 489 GIGRDLKNLIVESNQEVPE 507


>gi|300778148|ref|ZP_07088006.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300503658|gb|EFK34798.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 380

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 183/377 (48%), Gaps = 5/377 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I  ++++ GY+    +QE  +   L+ KD++  AQTGSGKT  F + +  
Sbjct: 2   SFESLGLSHNIIRSVNKLGYLKPFPIQEQAVPVILQGKDLMGIAQTGSGKTACFVMPILE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +N           L + PTRELA+Q+    +         +        V    + 
Sbjct: 62  KL--QNADVKKGRNIQVLILVPTRELAIQIDEVFKAFTGNLKREIRTMAVYGGVSINPQM 119

Query: 121 LQNG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  +++ TPGRL D I    L+IS ++ +V+DEAD+M  LGF +++  +    P  
Sbjct: 120 KGMFGVEVLIATPGRLLDLIDHNALSISGIRHLVIDEADKMFQLGFGEEMNKLFALMPVV 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++  +FSAT++  +  + +    + V + I  E  +  +I+  A  VA  ++   +  ++
Sbjct: 180 KQTTLFSATLNDKVAEMKEKLSINPVIIEIKKEEVEIENIEQLAYHVAPENKGPFLRYLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    + A++F S+  S     + L ++  + VA+  + SQ  R N L+  +   A++ +
Sbjct: 240 KEKKVEKALIFVSSTRSADNLVEKLKKNKIKAVAIHSQKSQGARRNNLEEFKVNGAQILV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+  RGI +  L  VI+ EL  +P + +HR GRTGRA  KG ++ ++  +  +    +
Sbjct: 300 ATDLIGRGIHIESLPCVINYELPRSPLDYIHRIGRTGRANEKGTAISILTDDELQHFRVI 359

Query: 360 FREANVSVVWEPAPSVE 376
            ++    V  +    ++
Sbjct: 360 QKKMGKKVTLQRTEGID 376


>gi|15595652|ref|NP_249146.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|107099439|ref|ZP_01363357.1| hypothetical protein PaerPA_01000451 [Pseudomonas aeruginosa PACS2]
 gi|254237315|ref|ZP_04930638.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
 gi|9946315|gb|AAG03844.1|AE004483_2 RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
 gi|126169246|gb|EAZ54757.1| RNA helicase DbpA [Pseudomonas aeruginosa C3719]
          Length = 458

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 204/405 (50%), Gaps = 15/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L              AL + PTRELA QV +E+  L      +  +   GGV    +   
Sbjct: 66  LNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVAS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH+VVGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R
Sbjct: 120 LEHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LAK +     R          S I+ R   +    R +A+V +L+
Sbjct: 180 QTLLFSATYPDGIEKLAKTF-MRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ + FC TR         L       +AL G+L Q+ER   L +  +    V +A
Sbjct: 239 HFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ + 
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + W     ++A  E      L  P+    I G  K  V 
Sbjct: 359 DLQKQPLAWYALGQLKASPE-----PLLPPMSTLCIAGGRKDKVR 398



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                   S   ++ G K K     L+  L   +G+   ++G I +     FV +     
Sbjct: 377 PEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIERGLA 436

Query: 519 DLLRRTVKLDK 529
               + +   K
Sbjct: 437 HQALKRLSEGK 447


>gi|289168235|ref|YP_003446504.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
 gi|288907802|emb|CBJ22642.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
          Length = 447

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 202/462 (43%), Gaps = 28/462 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALEELKFKAPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  ETSD------SVQAVITAPSRELATQIYQAARQIAAHSEVEVRVVNYVGGTDKARQIDKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGRDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGIAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + + + P             ++++D  F D+   D +   +    K D E I    
Sbjct: 359 K---LGIKFTP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIEMIGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
            +  +      ++I        R   R ++RA          
Sbjct: 403 KKKKKVKPGYKKKIQWAVDEKRRKTKRAENRARGRAERKAKR 444


>gi|149376365|ref|ZP_01894128.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
 gi|149359379|gb|EDM47840.1| ATP-dependent RNA helicase RhlB [Marinobacter algicola DG893]
          Length = 428

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 119/370 (32%), Positives = 189/370 (51%), Gaps = 9/370 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL----ALAST 61
           N+ Q + +A+++ G+ + T +Q   L   L  +D++  AQTG+GKT AF +    ++  T
Sbjct: 17  NLDQRVLDAITDIGFEHCTPIQAETLPFTLACQDLIGQAQTGTGKTAAFLITAIQSMLET 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
            + + DRF  AS P  LA+APTRELA+Q+ ++ E L   TG  V  V  G     +  + 
Sbjct: 77  PIPKEDRF--ASEPRVLALAPTRELAMQIAKDAEQLCGYTGHNVVTVVGGMNYDKQRDQL 134

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+     K 
Sbjct: 135 QNEIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKE 194

Query: 181 RMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                 FSAT +  +  LA  + K A  V I  E +    +     LV   ++   +VN 
Sbjct: 195 ERQTLLFSATFNQDVLNLASMWTKSAEFVEIEPEQKTAERVKQTVYLVGEDEKLPVLVNY 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    + AIVF + R       + L     +V  +SGE++Q +R   L+  ++G  +V 
Sbjct: 255 LQRPEVEKAIVFANRRDQCRDLDEDLRNQGVKVALMSGEIAQNKRLKTLEQFKNGSIQVL 314

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+SV    ++       
Sbjct: 315 VATDVAGRGIHVDGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSVSFASEDDAFSLPA 374

Query: 359 LFREANVSVV 368
           +    +  + 
Sbjct: 375 IESYISQKLT 384


>gi|194743072|ref|XP_001954024.1| GF18065 [Drosophila ananassae]
 gi|190627061|gb|EDV42585.1| GF18065 [Drosophila ananassae]
          Length = 678

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 198/417 (47%), Gaps = 11/417 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 192 VSEATLRAVQEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 249

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 250 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 309

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 310 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 369

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 370 SATQTAKIDALSKLALKAEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 429

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 430 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 489

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 490 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 548

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            A V +         +  I +   ++++    FL+    +  K        H  ++I
Sbjct: 549 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQI 604


>gi|227432082|ref|ZP_03914095.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352164|gb|EEJ42377.1| ATP-dependent RNA helicase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 454

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 188/396 (47%), Gaps = 10/396 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +ALS  G+   T+VQ  ++   L+ +DV+  +QTGSGKT  F + + + L  +
Sbjct: 12  NLKKEVIDALSAIGFYEPTAVQAKLIPDVLQGRDVVGQSQTGSGKTHTFLIPILNQLEQD 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVHRERRDLQ 122
                      A+   P+RELA Q+ + ++    +    +++     G     + ++   
Sbjct: 72  KKYV------QAVITTPSRELAAQITKAMKEFSNQLNTDISISEFVGGTDKQRQIKQLEN 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D +    L +  +  +V+DEAD  LD+GF +++++I  + P+  + 
Sbjct: 126 QQPQIVIGTPGRIKDLVESGSLKLHAVHTLVVDEADMTLDMGFLNEVDYIAGAMPEGLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     D+++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPHFEAIPVSTVIADTIDNWLLATKSKDKNDIIYQVLTIG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      +  L  H  +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKERAKEISSFLRGHGLKVTEIHGDIEPRERRRVMKAIQNLEYQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++ +  E  +HR GRTGR G  G+++ +   + +     L   
Sbjct: 306 LAARGIDIEGVSHVINDDIPAELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVAELE-A 364

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
             ++   +     E I  +D +  +Q       +  
Sbjct: 365 LGITFKAKQIKGNEIIDVKDRRARVQRVATTKKLDS 400


>gi|74006738|ref|XP_861475.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 9 [Canis familiaris]
          Length = 663

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 195/391 (49%), Gaps = 23/391 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I++            +MFSAT    I  LA+++  + + + +        +I  +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418

Query: 223 AVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
            V V  SD+ + ++++L   G  +  +VF  T+         L    +   ++ G+ SQ+
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  AL   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538

Query: 342 GMSVFVIPQ----NMQRRAERLFREANVSVV 368
           G  +         N+ +    L  EA   V 
Sbjct: 539 GKCLVTFDGLRNINITKDLLDLLVEAKQEVP 569


>gi|320582192|gb|EFW96410.1| ATP-dependent RNA helicase, putative [Pichia angusta DL-1]
          Length = 428

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 104/395 (26%), Positives = 178/395 (45%), Gaps = 21/395 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P+ + E+L        T++Q A +   L+ +D +  A+TGSGKT+AFG  +
Sbjct: 1   MSDFASLGLPRWLVESLQAMKITRPTNIQAACIPEILKGRDCIGGAKTGSGKTIAFGAPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    +       S    L + PTRELA+Q+  +   L A   + V + IGG S+  + 
Sbjct: 61  LAKWSQDP------SGIFGLVLTPTRELAMQIADQFAALGATVNLKVRLIIGGESMTDQV 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNIS---HLKAVVLDEADEMLDLGFRDDIEFILDS 175
             ++   H ++ TPGRL   I            +K +VLDEAD +L   F D ++   ++
Sbjct: 115 AMIKENPHFIIATPGRLAHIIMENEDECRGLKRVKYLVLDEADRLLTDSFTDHLQTCFEA 174

Query: 176 SPKKRRMLM--------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            P   +            S                    ++     +  S +    VL  
Sbjct: 175 LPNSNKRQTLLFTATVTDSVRALKDRPVAPGKQPVFLHELDNVDTVKIPSTLRLLYVLAP 234

Query: 228 LSDR--DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +  +      +     +    AIVF +   +     ++L        +L  E+ Q ER+N
Sbjct: 235 VVVKESMLHNILTNEDYKESTAIVFVNRSETAEILRRLLRHLEVTTTSLHSEMPQSERTN 294

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           +L   R G ARV +ATD+A+RG+D+P +ELVI+ ++  +P++ +HR GRT RAGRKG ++
Sbjct: 295 SLHRFRAGAARVLVATDLASRGLDIPSVELVINFDIPRDPDDYVHRVGRTARAGRKGDAI 354

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++  N   R   +     V +   P    + I++
Sbjct: 355 SMVTPNDLSRILAIEDRVGVKMEELPLSDNKVIKQ 389


>gi|160380652|sp|A7A0P8|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 239 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 298

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 299 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 355

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 356 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 415

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 416 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 475

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 476 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 535

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 536 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 593

Query: 359 LFREANVSVVWEPAPS--------VEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA 409
           + R A  SV    + +        V+ ++  +  ++++     ++ I  +EK+  ++L A
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRA 653

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 654 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 713

Query: 463 FKGSSW-FS 470
               +  + 
Sbjct: 714 DGNGARSYR 722


>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
 gi|1706521|sp|P32892|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
           Full=Deficiency of ribosomal subunits protein 1
 gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
 gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
 gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
          Length = 752

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 237 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 296

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 297 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 353

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 354 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 413

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 414 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 473

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 474 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 533

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 534 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 591

Query: 359 LFREANVSVVWEPAPS--------VEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA 409
           + R A  SV    + +        V+ ++  +  ++++     ++ I  +EK+  ++L A
Sbjct: 592 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRA 651

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 652 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 711

Query: 463 FKGSSW-FS 470
               +  + 
Sbjct: 712 DGNGARSYR 720


>gi|319651577|ref|ZP_08005704.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
 gi|317396644|gb|EFV77355.1| hypothetical protein HMPREF1013_02316 [Bacillus sp. 2_A_57_CT2]
          Length = 410

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 182/360 (50%), Gaps = 10/360 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I EA+ + G+   T +QE ++   L+ +  +  +QTG+GKT ++ L +   +   
Sbjct: 10  NLKPFIIEAVKDFGFFEPTEIQERMIPAVLKGESAIGQSQTGTGKTHSYVLPILQKVDPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG----VVVAVCIGGVSVHRERRDL 121
                      A+  APTRELA Q+  E+  +         +     IGG    R    L
Sbjct: 70  RQEV------QAIITAPTRELANQIYHEILKVTEHCPEGEEITARCYIGGTDKQRTIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H+VVGTPGR+ D ++ + L +   + +++DEAD MLD+GF +D++ I    P+K +
Sbjct: 124 KRQPHVVVGTPGRINDLVKEQALFVHTAEILIVDEADLMLDMGFIEDVDQIAARMPEKLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   V++  +    ++I++  +     ++   +   L  
Sbjct: 184 MLVFSATIPEKLKPFLKKYMENPKYVHVEPKQAAAANIEHWLLPSRHRNKVELVYQALTS 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF +T+         L     +V  + G+L+ +ER   ++ + D   +  +AT
Sbjct: 244 LNPYLAIVFTNTKKKADEVADGLISKGLKVGRIHGDLNPRERKKMMKQILDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL ++ +  +HR GRT RAG  G++V V   + +    RL +
Sbjct: 304 DLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGFSGIAVTVYETSDEDALNRLEK 363


>gi|167574569|ref|ZP_02367443.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis C6786]
          Length = 465

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 139/391 (35%), Positives = 204/391 (52%), Gaps = 12/391 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ++ GYV++T +Q A L   L   D++  A+TGSGKT AF L L + L       +     
Sbjct: 24  TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLD------ARRFDV 77

Query: 76  LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            A+ + PTRELA QV +E+  L   +  V V    GG  +  +   L++GAHIVVGTPGR
Sbjct: 78  QAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I 
Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ +     +     E  + S I  R   V   +R +A+  +L ++   + + FC+T+
Sbjct: 198 KLSQQF-LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                   VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE
Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   
Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +EA  E DA   L  P+    I G  K+ + 
Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIR 403



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G +   IG I V    T+V V      D LR
Sbjct: 387 PPMETLQILGGRKEKIRPGDVLGALTGEAGFSGAQIGKINVTEFSTYVAVERSIARDALR 446


>gi|167567410|ref|ZP_02360326.1| ATP-dependent RNA helicase DbpA [Burkholderia oklahomensis EO147]
          Length = 465

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 139/391 (35%), Positives = 204/391 (52%), Gaps = 12/391 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           ++ GYV++T +Q A L   L   D++  A+TGSGKT AF L L + L       +     
Sbjct: 24  TQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLPLLARLD------ARRFDV 77

Query: 76  LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            A+ + PTRELA QV +E+  L   +  V V    GG  +  +   L++GAHIVVGTPGR
Sbjct: 78  QAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGR 137

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+FSAT    I 
Sbjct: 138 IMDHLERGSLALGALNTLVLDEADRMLDMGFFDDIATVARQCPKERQTLLFSATYPDGIA 197

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L++ +     +     E  + S I  R   V   +R +A+  +L ++   + + FC+T+
Sbjct: 198 KLSQQF-LRNPKEVKLEERHEDSKIRQRFYEVTEDERLHAVGMLLNHYRPVSTLAFCNTK 256

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                   VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE
Sbjct: 257 QQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLE 316

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ +++ +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   
Sbjct: 317 AVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMNEMGRVGSIEQAQKRDVEWHPLAE 376

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +EA  E DA   L  P+    I G  K+ + 
Sbjct: 377 LEA--ESDAP--LLPPMETLQILGGRKEKIR 403



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                  +  G K+K     ++  L   +G +   IG I V    T+V V     
Sbjct: 387 PPMETLQILGGRKEKIRPGDVLGALTGEAGFSGAQIGKINVTEFSTYVAVERSIA 441


>gi|116054184|ref|YP_788628.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243551|ref|ZP_04936873.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|296386953|ref|ZP_06876452.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PAb1]
 gi|313111919|ref|ZP_07797709.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
 gi|115589405|gb|ABJ15420.1| RNA helicase DbpA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196929|gb|EAZ60992.1| RNA helicase DbpA [Pseudomonas aeruginosa 2192]
 gi|310884211|gb|EFQ42805.1| RNA helicase DbpA [Pseudomonas aeruginosa 39016]
          Length = 458

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 204/405 (50%), Gaps = 15/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L              AL + PTRELA QV +E+  L      +  +   GGV    +   
Sbjct: 66  LNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVAS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH+VVGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R
Sbjct: 120 LEHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LAK +     R          S I+ R   +    R +A+V +L+
Sbjct: 180 QTLLFSATYPDGIEKLAKTF-MRDPRQVKVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ + FC TR         L       +AL G+L Q+ER   L +  +    V +A
Sbjct: 239 HFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ + 
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + W     ++A  E      L  P+    I G  K  V 
Sbjct: 359 DLQKQPLAWYALGQLKASPE-----PLLPPMSTLCIAGGRKDKVR 398



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                   S   ++ G K K     L+  L   +G+   ++G I +     FV +     
Sbjct: 377 PEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIERGLA 436

Query: 519 DLLRRTVKLDK 529
               + +   K
Sbjct: 437 HQALKRLSEGK 447


>gi|309812379|ref|ZP_07706134.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
 gi|308433684|gb|EFP57561.1| DEAD/DEAH box helicase [Dermacoccus sp. Ellin185]
          Length = 522

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 180/368 (48%), Gaps = 5/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P V+ + L + G    T +Q A L   L+ +DVL   +TGSGKT AF L L
Sbjct: 1   MPSFSDLGVPAVLVKTLDKLGIDTPTPIQAATLPDSLKGRDVLGRGRTGSGKTFAFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L         A  P +L +APTRELA Q+   L+ L A  G+      GGV  + + 
Sbjct: 61  VARLDETRYEID-AYRPRSLVLAPTRELANQIADSLKPLAAAAGLSYTTVFGGVGQNPQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L+ G  +++  PGRL D +     ++S ++  +LDEAD M D+GF   ++ IL   P+
Sbjct: 120 KALKAGVDVLIACPGRLEDLMSQGFCDLSDVEVCILDEADHMADMGFLPGVKRILTKVPR 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  L K +  + V     S     + +++    V    R +  V  
Sbjct: 180 EAQHLLFSATLDGGIDVLVKKFLSNPVTHQADSAQSPVATMEHHVFAVDSDSRID--VLT 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    +VF  T+    +  K LA      V L G LSQ  R   L     G     
Sbjct: 238 DLVSAPGRTVVFTRTKHGAKKLAKQLAGRGIPAVDLHGNLSQNARVRNLDAFHSGAVETL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + D+ LV+HA+  +  +  LHRSGRT RAG  G  + ++  + +   + 
Sbjct: 298 VATDIAARGIHVDDVSLVVHADPPTEHKAYLHRSGRTARAGAAGTVITLMTPDQRGDVKS 357

Query: 359 LFREANVS 366
           L R A ++
Sbjct: 358 LLRMAKIN 365


>gi|312194304|ref|YP_004014365.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225640|gb|ADP78495.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 489

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 181/378 (47%), Gaps = 6/378 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  +   L+       T +Q A L   L  +DVL   +TGSGKT+AF L +
Sbjct: 1   MSSFTDLGVPARLTSVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A AP AL +APTRELA Q+   L+ L A  G+      GGV  + + 
Sbjct: 61  VARL--SGGPRAQAGAPRALILAPTRELAAQIDTALQPLAAVAGLTSCTVFGGVGQNPQV 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  IVV  PGRL D I+ +  +++ +K  VLDEAD M DLGF   +  +L  +P 
Sbjct: 119 AAIRRGVDIVVACPGRLEDLIKQRHCSLAQVKITVLDEADHMADLGFLPAVRRLLGQTPS 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+  AI TL + Y          S       + +  + V    R   +V+ 
Sbjct: 179 GGQRMLFSATLDKAIDTLVRQYLNKPAVHEADSAQSPVGTMAHHVLHVERDSRLPVLVD- 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    +VF  T+       + L       V L G LSQ  R+  L   + GRA   
Sbjct: 238 -LSSAPGRTVVFTRTKHGAKALARHLNRAGVPTVELHGNLSQNARTRNLDDFQTGRAAAL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + D+ LVIHA+  ++ +  LHRSGRT RAG  G  + +   +  R   +
Sbjct: 297 VATDIAARGIHVDDVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTDQLREVSQ 356

Query: 359 LFREANVSVVWEPAPSVE 376
           L R A +        S +
Sbjct: 357 LARTAGIKPATTRVASAD 374


>gi|283785363|ref|YP_003365228.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
 gi|282948817|emb|CBG88418.1| ATP-independent RNA helicase [Citrobacter rodentium ICC168]
          Length = 457

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 137/409 (33%), Positives = 206/409 (50%), Gaps = 17/409 (4%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F     +P      L E GY+++T VQ A L   L  +DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSILNVLPAAQLANLRELGYLSMTPVQAAALPAILAGQDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +       +      +L + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLQHID------AALFKTQSLVLCPTRELADQVAGELRRLARSMPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLEGLTTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+D V +           I+ +    +   +   + 
Sbjct: 175 PASRQTLLFSATWPEAIAAISARVQRDPVTI-EIDAVDALPAIEQQFFETSTQGKIPRLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q+ER   L    +G AR
Sbjct: 234 TLLSLHQPASCVVFCNTKKDCQAVCDALNASGQSALALHGDLEQRERDMTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  LELV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKALELVVNFELAWDPEVHVHRIGRTARAGNRGLAISFCAPAEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     +++ W  AP+  AI      + L+  +    I G +K  + 
Sbjct: 354 NILAEMLQLTLNWCDAPTNMAI------KPLEAEMMTLCIDGGKKAKMR 396



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +  G K K     ++  L    G++   IG I V P   +V V         + 
Sbjct: 381 EMMTLCIDGGKKAKMRPGDVLGALTGDMGLDGADIGKITVHPAHVYVAVRQSVAHHAWKQ 440

Query: 525 VKLDK 529
           ++  K
Sbjct: 441 LQNGK 445


>gi|302915827|ref|XP_003051724.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732663|gb|EEU46011.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 714

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 109/409 (26%), Positives = 180/409 (44%), Gaps = 32/409 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            N+P  +   + + GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 283 SNLPPRLLSVVDQVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISD 342

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   +  +    P AL +APTREL  Q+  E +      G      +GG S+  +   L+
Sbjct: 343 LPPLEDHNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEEQAYALR 402

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NGA I+V TPGRL D I  + L +     V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 403 NGAEIIVATPGRLVDCIERRLLVLGQCCYVIMDEADRMIDLGFEESVNKILDALPVSNEK 462

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------- 216
                  +  +            +  + +                               
Sbjct: 463 PDTDDAENAQLMKRYLGGNDRYRQTMMYTATMPPVVEKIAKKYLRRPAVVTIGNAGEAVD 522

Query: 217 -SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
             +     V      +      +     A   IVF + + +     + +    +  V L 
Sbjct: 523 TVEQRVEFVSGEDRRKKRLQEILSSEAFAPPIIVFVNIKRNCDAVARDIKAMGWSAVTLH 582

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 583 GSKTQEQREAALASVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 642

Query: 336 GRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRAG+ G+++  +           +++  ++++S V E     EA + R
Sbjct: 643 GRAGKSGVAITFLGNEDADNMYDLKQILSKSSISKVPEELRRHEAAQSR 691


>gi|297686801|ref|XP_002820927.1| PREDICTED: nucleolar RNA helicase 2-like [Pongo abelii]
          Length = 783

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 139/590 (23%), Positives = 238/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 248 LHGELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 366 EDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 601

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 602 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 659

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 660 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 703

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 704 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752


>gi|125559478|gb|EAZ05014.1| hypothetical protein OsI_27195 [Oryza sativa Indica Group]
          Length = 414

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 118/371 (31%), Positives = 195/371 (52%), Gaps = 13/371 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q   +   L+ +DV+   QTGSGKT AF L +   LL    R       LA
Sbjct: 1   MGWKAPTRIQAEAIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRPRF----LA 56

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
             +APTRELA+Q+ ++ E L +   +  +V IGG+    +   L    H+VVGTPGRL D
Sbjct: 57  CVLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLD 116

Query: 138 HIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           H+      + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSAT++  +  L
Sbjct: 117 HLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKL 176

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +   K+ V+V +AS+      +     +V    +D  ++++L        +VF  T  S
Sbjct: 177 RRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCES 236

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                 +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG+D+  +++V
Sbjct: 237 TRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVV 296

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +   N ++ +HR GRT RAG+ G +V ++ Q         F+     +  E  P+  
Sbjct: 297 INYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFE----GEFFKLTEQFLGGEEIPA-- 350

Query: 377 AIRERDAQRIL 387
             R+ DA  I+
Sbjct: 351 --RKVDADEIM 359


>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
 gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
           12B01]
          Length = 443

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 176/373 (47%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q   +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 8   LDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIHKAL--K 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +   A  P  + +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 66  TKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGGENFNDQVKALRKYPR 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +V TPGRL DH+  + L +  ++ ++LDEAD MLDLGF  ++  I +++  +RR  +  
Sbjct: 126 FIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMF 185

Query: 187 ATISPAITTLAKNYQK---DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +             +            S  +         +   L  ++  +  ++    
Sbjct: 186 SATLDHAEVNGIANEMLDAPKRISVGVSNEQHLDITQKFYLCDHLDHKEAILDRVIEEAE 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +TRA   R T  L E   + VALSG L+Q +R+  +        ++ + TDV
Sbjct: 246 YRQVMIFTATRADTDRLTDKLNEKKLKAVALSGNLNQTQRNAIMSQFERAVYKILVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RGID+P++  VI+ ++  + E  +HR GRTGRAG KG ++ ++        +R+    
Sbjct: 306 ASRGIDIPNVSHVINFDMPKHTEEYVHRVGRTGRAGNKGDAISLVGPKDWDSFKRVELYL 365

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 366 QQDLTFSVLEGLK 378


>gi|316978431|gb|EFV61418.1| putative ATP-dependent RNA helicase Pl10 [Trichinella spiralis]
          Length = 552

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 177/383 (46%), Gaps = 20/383 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I + +    Y   T VQ+  +   L  +D++  AQTGSGKT AF L +   +L+ 
Sbjct: 90  NLHPWIMDNIRLCHYDKPTPVQKFAIPTALENRDLMACAQTGSGKTAAFLLPILHHILSG 149

Query: 66  NDRF----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSV 114
                              P AL +APTREL +Q+  E      +T ++  +  G   + 
Sbjct: 150 GPEMLRKSDTAPNGRRRLYPAALVLAPTRELTLQIFNEACKFSYRTPIMSTILYGGRENY 209

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G H++V TPGRL D +    + +   + +VLDEAD MLD+GF   I  I++
Sbjct: 210 RDQINKLRIGCHLLVATPGRLNDVMNQGYIGLDACRFLVLDEADRMLDMGFEPQIRQIVE 269

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALS 229
            S   RR    +   S       +   +D +  +              +I  + V V   
Sbjct: 270 MSGMPRRSHRQTMMFSATFPHEIQMLAQDFLVPDYVFLAVGRVGSTSENITQKLVWVEDY 329

Query: 230 DRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           D+   ++++L     +   ++F  T+   +     L+   + VVA+ G+L Q ER   L+
Sbjct: 330 DKRAFLLDLLNASSPETLTLIFVETKRGAADLAYFLSGERYSVVAIHGDLKQFEREQHLE 389

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G   + +AT VAARG+D+P+++ VI+ +L S  +  +HR GRTGR G  G++    
Sbjct: 390 SFRSGNTPILVATAVAARGLDIPNVKHVINYDLPSEIDEYVHRIGRTGRVGNIGLATTFF 449

Query: 349 ---PQNMQRRAERLFREANVSVV 368
               +NM R    L  EAN  + 
Sbjct: 450 NNKNKNMARDLAELLVEANQELP 472


>gi|308502287|ref|XP_003113328.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
 gi|308265629|gb|EFP09582.1| hypothetical protein CRE_25199 [Caenorhabditis remanei]
          Length = 698

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 181/388 (46%), Gaps = 22/388 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++   + I + +   GY   T VQ+  +      +D++  AQTGSGKT AF + L +
Sbjct: 228 LFSDLSLHEWIEDNIKTAGYDRPTPVQKYSIPALQSGRDLMSCAQTGSGKTAAFLVPLVN 287

Query: 61  TLLAEND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           ++L +                   P AL ++PTREL++Q+  E      +T +  A+  G
Sbjct: 288 SILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIYNESRKFAYRTPITSALLYG 347

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I
Sbjct: 348 GRENYKDQIHKLRLGCHILIATPGRLIDVMDQGLIGLEGCRYLVLDEADRMLDMGFEPQI 407

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRA 223
             I++ +    +    +A  S       +   +D ++ N          +   + +    
Sbjct: 408 RQIVEFNRMPPKEERVTAMFSATFPKEIQLLAQDFLKPNYVFLAVGRVGSTSENIMQKIV 467

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            +     R   +  +     +   +VF  T+   S     L+   +QVV + G+L Q ER
Sbjct: 468 WVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYYLSRQNYQVVTIHGDLKQFER 527

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              L + R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G+
Sbjct: 528 EKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGL 587

Query: 344 SVFVI---PQNMQRRAERLFREANVSVV 368
           +        +N+ R    L  EAN  + 
Sbjct: 588 ATSFFNDKNRNIARELMDLIVEANQELP 615


>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 413

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 117/372 (31%), Positives = 186/372 (50%), Gaps = 2/372 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   +   LSE  Y   T VQ   +   L   D++  AQTG+GKT AF L +   L  L 
Sbjct: 8   LSAELLNVLSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPILERLSQLK 67

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +      +   AL + PTRELA+QV +          +  A+  GGVS+  +   L+ G
Sbjct: 68  SSQTSYELTPVRALILTPTRELALQVHQSFVRYGDGLTLKSAIVYGGVSIDAQADILKAG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL DH+R   L ++ L  +V DEAD MLD+GF+D+I+ IL   PK+R+ L+
Sbjct: 128 VDILIATPGRLLDHLRRGSLTLTQLAFLVFDEADRMLDMGFKDEIDAILKQLPKERQTLL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L+K   KD   + +   N     ++ R   V    +   + +++     
Sbjct: 188 FSATFDDGVFNLSKRLLKDPKLIEVGKRNAAAGKVEQRVYAVDADRKSELLCHLILSKKW 247

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F   +    +    L     + +A  G+LSQ  R   LQ  + G  +V +ATDVA
Sbjct: 248 RQVLIFSRKKQGADKLAAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE+V++ EL    E+ +HR GRTGRAG  G+++ +  ++     E +    +
Sbjct: 308 ARGLDVESLEVVVNYELPFVAEDYVHRIGRTGRAGNSGLAITLYCEDDALLLEEVEAVLD 367

Query: 365 VSVVWEPAPSVE 376
             +  +     E
Sbjct: 368 TRLPQQWLEGFE 379


>gi|302340274|ref|YP_003805480.1| DEAD/DEAH box helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637459|gb|ADK82886.1| DEAD/DEAH box helicase domain protein [Spirochaeta smaragdinae DSM
           11293]
          Length = 541

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 194/374 (51%), Gaps = 9/374 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E N+ + +   + + G+     VQEA L   L+ KDV V +QTGSGKT AF + + 
Sbjct: 1   MKFEEFNLHEDVLAGIKDAGFEACMPVQEATLKETLQGKDVTVQSQTGSGKTAAFLVTIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                       ++    + I+PTRELAVQ+  E + L A  G+ +    GGV   ++  
Sbjct: 61  QRWCTTKPEERRST----MIISPTRELAVQIEDEAKLLGAHMGMNIGCFYGGVGYKQQEE 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  + +GTPGRL D  + + ++ + +  VV+DEAD + D+GF  DI  +L     +
Sbjct: 117 ALKKGVDLYIGTPGRLIDFGQNRKIDFTTIGTVVIDEADRLFDMGFYPDIRRMLKMMGPR 176

Query: 180 RRMLMF--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + +    SAT+   +  +A  +    V V+I  E+    +I      V    + + ++ 
Sbjct: 177 EKRMTMLFSATLGTKVLNVAWEHMNMPVEVSIEPEHITVREITQELYHVEGEKKFSLMLG 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+ +   NAI+F + + +     K L+ + +    L G+L Q++R + +  ++ G  R 
Sbjct: 237 LLKKYDPPNAIIFTNMKVTAVEVAKRLSRNGYAAKFLMGDLPQKKRLSTIDRVKHGEIRF 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + DL +VI+ ++  +PE+ +HR GRT RAG+ G ++ +  +      E
Sbjct: 297 LVATDVAARGLHVDDLAMVINYDIPEDPESYVHRIGRTARAGKSGRAITLACERYVYGLE 356

Query: 358 RLFR--EANVSVVW 369
            + +  E  + V W
Sbjct: 357 PIEQLLEQKIPVEW 370


>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
          Length = 754

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 239 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 298

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 299 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 355

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 356 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 415

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 416 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 475

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 476 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 535

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 536 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 593

Query: 359 LFREANVSVVWEPAPS--------VEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA 409
           + R A  SV    + +        V+ ++  +  ++++     ++ I  +EK+  ++L A
Sbjct: 594 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVEPMNDTIEDILVEEKEEKEILRA 653

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 654 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 713

Query: 463 FKGSSW-FS 470
               +  + 
Sbjct: 714 DGNGARSYR 722


>gi|302562189|ref|ZP_07314531.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302479807|gb|EFL42900.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 451

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 186/375 (49%), Gaps = 5/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   LS  G      +Q A L   L  +DVL   +TGSGKT+AFGL L +      
Sbjct: 15  LPAEVLRTLSALGVREPFPIQAATLPDSLEGRDVLGRGRTGSGKTLAFGLPLLTR---TA 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QV ++L        + +   +GG+S+ R+   L+ GA 
Sbjct: 72  GRRAAPKQPLALVLVPTRELAQQVTQDLAPYAEALRLRMTTVVGGLSIGRQTAALRQGAE 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I      +  ++  VLDEAD+M D+GF   +   LD      + ++FS
Sbjct: 132 VVVATPGRLHDLIERNACRLGSVRITVLDEADQMCDMGFLPQVTDALDQVHPDGQRMLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  D V  ++       + +++  ++V   DR    V          
Sbjct: 192 ATLDRDVDKLVGRYLHDPVVHSVDPPAGAVTTMEHHVLVVHGPDRYA--VVTEIAARDGR 249

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+ +V + T+ L        AL G  SQ +R+  L   +DG   V +AT VAAR
Sbjct: 250 VLLFLDTKHAVDQLTRHLRASGVPAGALHGGKSQPQRTRTLAQFKDGGITVLVATGVAAR 309

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+  EA V 
Sbjct: 310 GLHIDDLDLVVNVDPPADPKDYVHRAGRTARAGASGSVVTLVTAGARRETSRMMAEAGVE 369

Query: 367 VVWEPAPSVEAIRER 381
                  S EA   R
Sbjct: 370 AAVTKVRSGEAELSR 384


>gi|296108765|ref|YP_003615714.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
 gi|295433579|gb|ADG12750.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus infernus
           ME]
          Length = 357

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 188/356 (52%), Gaps = 13/356 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +     +AL  +G+   T +QE I+   L E  +++  AQTG+GKT AFGL +   +  E
Sbjct: 8   LSDNTLKALKRKGFKKPTKIQEKIIPILLSEDVNIVGQAQTGTGKTAAFGLPIIEKINDE 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +         AL + PTRELA QV  EL+ L  K  + +    GG  +  +   L  GA
Sbjct: 68  KE-------IKALILTPTRELAKQVAEELKSLKGKKNLKIVEIYGGKPIKEQIYKL-RGA 119

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +IVVGTPGRL DHI+ K +N+ +L   VLDEADEML++GF +D+E IL  +   + +L+F
Sbjct: 120 NIVVGTPGRLLDHIKRKTINLKNLSYFVLDEADEMLNMGFIEDVEEILKHTNDDKNILLF 179

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  LAK Y +D   + + S         ++      +     ++  +      
Sbjct: 180 SATLPREILNLAKKYMRDYKLIKVKSSKNLIEQKHFKVS----NSEKFNLLCKIINEENF 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC TR  V    + L E  +   A  G+LSQ  R   L+  +  +  + ++TDVAA
Sbjct: 236 YGLIFCKTREDVKNLARKLIEKGYSAEAFHGKLSQFRREKILKRFKMKKINILVSTDVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RGID+  L  VI+  L  NPE  +HR GRTGRAG++G ++  +  +  ++   + R
Sbjct: 296 RGIDIEGLTHVINYSLPQNPEYYVHRIGRTGRAGKRGKAITFVEPHEYKKYAHMKR 351


>gi|156550989|ref|XP_001604385.1| PREDICTED: similar to RE48840p [Nasonia vitripennis]
          Length = 1378

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 201/413 (48%), Gaps = 9/413 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + + +   +A++E G+ ++T +Q   + P L  +D++ +A+TGSGKT++F +     +  
Sbjct: 212 DKVCENTLKAIAEMGFTDMTEIQAMSIPPLLEGRDLVGAAKTGSGKTLSFLIPAVELIY- 270

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + I+PTREL++Q    L+ L         + +GG S   E + L  G
Sbjct: 271 -KLKFMPRNGTGCIIISPTRELSMQTFGVLKELMKYHYHTYGLLMGGASRQTEAQKLSKG 329

Query: 125 AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH          +L+ +++DEAD +LD+GF ++++ I++  PK+R+ +
Sbjct: 330 VNIVVATPGRLLDHLQNTPDFLYKNLQCLIIDEADRILDIGFEEELKQIINILPKRRQTM 389

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +     L     K         + ++ + ++      V      R   +   L+
Sbjct: 390 LFSATQTKKTEALTTLAVKKEPVYVGVDDEKEKATVEGLEQGYVACPSEKRFLLLFTFLK 449

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+++ G+  Q +R+       + ++ + + 
Sbjct: 450 KNRQKKVMVFFSSCMSVKYHHELLNYIDLPVMSIHGKQKQTKRTTTFFQFCNAQSGILLC 509

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+PD++ ++  +   +P+  +HR GRT R  G  G ++ ++         R 
Sbjct: 510 TDVAARGLDIPDVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFL-RY 568

Query: 360 FREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            ++A V V        + A  +   ++++    FL+    +  K        H
Sbjct: 569 LKQARVPVNEFEFSWNKIADIQLQMEKLISKNYFLNMSAKEAFKAYVRAYDSH 621


>gi|257141454|ref|ZP_05589716.1| ATP-dependent RNA helicase DbpA [Burkholderia thailandensis E264]
          Length = 465

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 137/405 (33%), Positives = 204/405 (50%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GY  +T +Q A L   L   D++  A++GSGKT AF LAL + 
Sbjct: 10  FSALPLTPATLANLAQLGYTVMTPIQAASLPIALAGHDLITHAKSGSGKTAAFSLALLAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      AL + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 70  LD------ARRFDVQALVLCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQTQS 123

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 124 LEHGAHIIVGTPGRIMDHLDRGHLTLDALNTLVLDEADRMLDMGFFDDIAKVARLCPPTR 183

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +     E    S I  R   V   +R +A+  +L+
Sbjct: 184 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLEERHDDSKIRQRFYEVTEDERLHAVGLLLK 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 243 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 302

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 303 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 362

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W P   ++A    D    L  P+    I G  K  + 
Sbjct: 363 QALGRDVEWHPLAELKA----DGNEPLLPPMETLQILGGRKDKIR 403



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
              G+           +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 378 KADGNEPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGSQIGKINVTEFSTYVALE 437

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 438 RGIARDALRKLNAGKIKGKRVKVRLMD 464


>gi|229085106|ref|ZP_04217357.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
 gi|228698231|gb|EEL50965.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-44]
          Length = 389

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 190/370 (51%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     D +  ++ ++ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMVDAVHDVIKATMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++     ++         S +++  ++    ++++ +  I+   
Sbjct: 175 VFFSATMTKDAEEVARDF-AVEPQLVRVKRTETKSLVEHTYIVCERREKNDYVRRIMHIG 233

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 234 NVK-AVAFLNDPYRLDEIAEKLRYRKMKASALHAEASKQEREATMRAFRQGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIQFTKQEM 362


>gi|163789073|ref|ZP_02183517.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159875737|gb|EDP69797.1| possible ATP-dependent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 110/405 (27%), Positives = 185/405 (45%), Gaps = 10/405 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  AL + G+   T +Q    N     KDV+  AQTG+GKT+A+ L +   L   
Sbjct: 7   NLNTPLYNALDDLGFDTPTPIQAQSFNVVASGKDVVGIAQTGTGKTLAYMLPILRNL--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV  E+E         V    GG +++ +++ +  G 
Sbjct: 64  --KYSRQDNPRVLVLVPTRELVVQVVSEIEKFSKYINNRVLGVYGGTNINTQKQAVAQGQ 121

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D    + L +  ++ +V+DE D MLDLGFR  +  I D  P +R+ +MF
Sbjct: 122 DIIVATPGRLYDLAVSRVLQLKSIQKLVIDEVDVMLDLGFRHQLMNIFDILPPRRQNIMF 181

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242
           SAT++  +  L  ++  +  +++IA       +I                   +      
Sbjct: 182 SATMTKDVDELITDFFINPTKISIAVSGTPLENIKQIRYDVPNFYTKVNLLEELLHDTNE 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +K  I     R +   F K+      Q   +    +Q  R  +++  R G  R+ +ATD
Sbjct: 242 FSKVLIFVAYKRMADRLFDKLEDIFPGQSCVIHSNKTQNYRLRSIEQFRAGEHRLLVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ ++  VI+ + +  PEN +HR GRTGRA ++G ++    +  Q   ER+   
Sbjct: 302 VMARGLDIDNITHVINFDTTDYPENYMHRIGRTGRAEKQGRTILFSTEAEQDARERIEEL 361

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
             + +     P    I     +   + P   +     +++  D  
Sbjct: 362 MQMQIETFVIPESVEISTELIEE--ERPQIREHYNPTKRRDEDAP 404


>gi|114563615|ref|YP_751128.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114334908|gb|ABI72290.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 451

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 113/381 (29%), Positives = 185/381 (48%), Gaps = 6/381 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ + + ++L   G    T VQ   L   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDKRLLDSLKHLGISTPTDVQAQALPIALSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRVI--STRALSKKDPRVLILLPTRELAQQVYGQLRLLVANTQYKAISVLGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H +V TPGR+ DH++ + L ++ L+ +VLDEAD MLDLGF   ++ I D++  K
Sbjct: 119 ALARDPHFIVATPGRIADHLQQRHLYLNGLELLVLDEADRMLDLGFAPQLKAINDAADHK 178

Query: 180 RR---MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           RR   M   +   +          +  +      S            ++  L  +   + 
Sbjct: 179 RRQTLMFSATLDHNSIGDIATTLLKSPSHVSIGESYTEHKDIEQRIILVDHLDHKQAVLQ 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL     K  IVF +TR+   R   +LA   F   ALSG+L Q  R+  +     G+++
Sbjct: 239 HILSQETHKQVIVFTATRSDTDRLATLLAAQGFATSALSGDLKQSARNQIMDQFARGQSQ 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG +V  +        
Sbjct: 299 ILVTTDVASRGLDLINVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSFVGPKDWDSF 358

Query: 357 ERLFREANVSVVWEPAPSVEA 377
           +++      +        ++A
Sbjct: 359 KKVQLFLRKNFEPTVIEGLKA 379


>gi|325185113|emb|CCA19605.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 711

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 192/385 (49%), Gaps = 14/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I   L + G    T++Q       L  +D++  A+TGSGKT+AF + +   ++ + 
Sbjct: 190 LDRKILNLLMKLGLEAPTAIQAQTFPVALSGRDMIGIAKTGSGKTLAFTIPMIWHVMDQR 249

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +  S    P+A+ I+PTRELA Q+  +++      G       GGV    + + L+ GA 
Sbjct: 250 E-LSKGEGPIAIVISPTRELAHQIYTQVKMFTKLYGAECVAVYGGVGKWEQVQALRKGAE 308

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL + IR K +  + +  VVLDEAD M +LGF   +  +L      R+ L+FS
Sbjct: 309 VLIATPGRLIELIRKKTIKTNRVTFVVLDEADRMFELGFESQLRSMLGQLRPDRQSLLFS 368

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT  P I  LA+    + ++V +    + +  I    V++    +    +          
Sbjct: 369 ATFRPRIEQLARAILHNPIKVTVGKAGQANEVISQIPVVLLNHGKKWEWLMKNLERIVDQ 428

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +++      +K L    ++   L G+ SQ +RS+AL   ++G+  V +ATDVA
Sbjct: 429 GRVLIFANSKVGCEELSKNLDAMHYRCCLLHGDKSQYDRSSALADFKNGKCPVMVATDVA 488

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG----RKGMSVFVIPQNMQRRAERL- 359
           +RG+D+ D++ V++ +++ N +  +HR GRTGR G      G++  +I     + A +L 
Sbjct: 489 SRGLDIRDVKTVVNYDVAKNIDIHVHRIGRTGRMGVDGFEPGVAYTLITNKETQFAAQLV 548

Query: 360 --FREANVSVVWEPAPSVEAIRERD 382
                A   V  E      AI ERD
Sbjct: 549 CNMDTAGQPVSAELL----AIAERD 569


>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
           alpha153]
          Length = 399

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 115/335 (34%), Positives = 175/335 (52%), Gaps = 5/335 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I  A+S  GY + T +Q   +   L  +D++ SAQTGSGKT AF L     L   
Sbjct: 9   NLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQTGSGKTAAFLLPTLQKLTKR 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +++  P   P AL + PTRELA QV +                 +GG S   + R L   
Sbjct: 69  SEK--PGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQTRALSKP 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++V TPGRL D ++   ++   L+ ++LDEAD MLD+GF DDIE I++++P  R+ L+
Sbjct: 127 VDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   A+  LA+   KD   + +   + Q    +       +  ++  + +ILR    
Sbjct: 187 FSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMRHKNRLLDHILRDADI 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F ST+A        L E  F    L G++ Q  R+  L  +R GR ++ +ATDVA
Sbjct: 247 DQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMDLRKGRCKILVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSG--RTGR 337
           ARGID+P +  VI+ +L    E+ +HR G  R+GR
Sbjct: 307 ARGIDVPTITHVINYDLPKQAEDYVHRIGPYRSGR 341


>gi|126326113|ref|XP_001363225.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 668

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 111/416 (26%), Positives = 209/416 (50%), Gaps = 13/416 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +   +A++E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF +     ++    +
Sbjct: 185 ENTLKAIAEMGFTNMTEIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPSIELIV--KLK 242

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F P +    L ++PTRELA+Q    L+ L         + +GG +   E + L NG +I+
Sbjct: 243 FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINII 302

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ ++FSA
Sbjct: 303 VATPGRLLDHMQNTPGFMFKNLQCLVIDEADRILEVGFEEEMKQIIKLLPKRRQTMLFSA 362

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGA 244
           T +  +  LAK   K         +++  + +D      V+     R   +   L+ +  
Sbjct: 363 TQTRKVEDLAKISLKKEPLYVGVDDDKDTATVDGLEQGYVVCPSEKRFLLLFTFLKKNRK 422

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  + + + TDVA
Sbjct: 423 KKLMVFFSSCMSVKYHYELLNYIDLPVMAIHGKQKQNKRTTTFFQFCNADSGILLCTDVA 482

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAERLFRE 362
           ARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++         R  ++
Sbjct: 483 ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEELGFL-RYLKQ 540

Query: 363 ANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           A V +         +  I +   +++++   FL     +  K        H  ++I
Sbjct: 541 AKVPLSEFEFSWSKISDI-QAQLEKLIEKNYFLHKSAQEAYKSYVRAYDSHSLKQI 595


>gi|321469269|gb|EFX80250.1| putative germ-line specific RNA helicase vasa protein [Daphnia
           pulex]
          Length = 761

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 113/360 (31%), Positives = 181/360 (50%), Gaps = 9/360 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +  ++ + +   GYV  T VQ+  +   L ++D++ SA TGSGKT A+ + +
Sbjct: 326 ITSFEEAGLRPLLLQNIKNSGYVKPTPVQKGSIAVILAKRDLIASAVTGSGKTAAYLVPV 385

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + LL +            P  + +APTRELA+Q+ RE       + +   +  GG    
Sbjct: 386 MNILLEQGISGGSHGMVQKPEVVILAPTRELAIQIHREAYKFAYNSVLKSVLIYGGTVSS 445

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +R +LQ G +I+V T GRL D +     + S +K ++LDEAD MLD+GF  DIE I   
Sbjct: 446 NQRSNLQAGCNILVATTGRLKDFLDRGVFDFSAVKFLILDEADRMLDMGFGPDIEKIAAH 505

Query: 176 SPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                    R  MFSAT    +  LA NY +D + V   +    + D+       A +++
Sbjct: 506 PTMPPKGIRRTCMFSATFPEEVQALAANYMEDYIFVTTGTVGGTNPDVQQEFFQCARNEK 565

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  LR  G    IVF  ++ +       L  +  Q  ++ G+  Q +R  AL+ ++
Sbjct: 566 RTKLMETLRGLGESKIIVFVDSKKTADFVAVYLCNNDIQATSIHGDRLQSQREEALRDLK 625

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +AT+VAARG+D+  +  VI+ +L S+ E  +HR GRTGR G  G S+    + 
Sbjct: 626 SGKRNVLVATNVAARGLDIEGVNYVINYDLPSDIEEYVHRIGRTGRVGNVGHSISFFDEE 685


>gi|52842336|ref|YP_096135.1| ATP-dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629447|gb|AAU28188.1| ATP dependent RNA helicase DbpA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 468

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 205/377 (54%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L +
Sbjct: 12  SFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDMIAQAKTGSGKTAAFALCLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L              AL + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFVVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLD 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+
Sbjct: 126 SLRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISVCPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+K + KD   V++ +   +     +   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRHAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++ ++     +R   +
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGIALSIVTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                + + W     +E
Sbjct: 366 EDNYPLPIHWGNINELE 382



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  ++ G K K     ++  L + +G+   +IG I +    ++V +     D 
Sbjct: 391 PEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHHSQADK 447


>gi|331006961|ref|ZP_08330204.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
 gi|330419223|gb|EGG93646.1| ATP-dependent RNA helicase RhlB [gamma proteobacterium IMCC1989]
          Length = 451

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 185/372 (49%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+   + +Q   L   L   D+L  AQTG+GKT AF  A+   LL   
Sbjct: 76  LEAPLMHAIADLGFEYCSPIQAQSLPNTLNGHDMLGKAQTGTGKTAAFLTAIIDDLLKNP 135

Query: 67  DRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                 +    AL IAPTREL VQ+  + + L   T   V  +  G     +++      
Sbjct: 136 LEGERYAGEARALIIAPTRELVVQIAEDAKLLVKHTDLTVHTLVGGMDYTKQQQGVRNKF 195

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML- 183
             I+V TPGRL D    K +++  ++ +VLDEAD MLD+GF   +  I+  +P+      
Sbjct: 196 VDILVATPGRLLDFASNKDVHLDQVEILVLDEADRMLDMGFIPQVRRIVRLTPRCENRQT 255

Query: 184 -MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LA+ + ++   V I  E+     ++    LVA S++   + N+ R  
Sbjct: 256 LFFSATFTDDVMRLAEQWTQNPCSVEIEPESVATDTVEQHVYLVAASEKYKLLTNLARQP 315

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++ IVF + R    R  + L +H F    LSGE++Q +R   L   + G+ ++ +ATD
Sbjct: 316 DVESLIVFGNRRDECRRLHEQLVKHGFSAGLLSGEVAQNKRIKTLDGFKSGKIKILVATD 375

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI + ++  V++  L   PE+ +HR GRTGRAG+KG+S+    ++       L + 
Sbjct: 376 VAGRGIHINNISHVVNFSLPEEPEDYVHRIGRTGRAGKKGVSISFACEDDAFLLPELEKL 435

Query: 363 ANVSVVWEPAPS 374
               +  E  P 
Sbjct: 436 LGQKLECEQPPE 447


>gi|322833585|ref|YP_004213612.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
 gi|321168786|gb|ADW74485.1| DEAD/DEAH box helicase domain protein [Rahnella sp. Y9602]
          Length = 460

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 130/364 (35%), Positives = 193/364 (53%), Gaps = 8/364 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L+E GY  +T +QEA L   L  +DV   A+TGSGKT AFG+ L +++    
Sbjct: 11  LPVEQLSNLNELGYTEMTPIQEASLPAILLGQDVRAKAKTGSGKTAAFGIGLLNSITVSQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                     AL + PTRELA QV +EL  L   T  + +    GG ++  +   L +  
Sbjct: 71  ------FVAQALVLCPTRELADQVSKELRRLARFTQNIKILTLCGGQAIGPQLESLVHPP 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ +H+R   L +  LK +VLDEAD MLD+GF +DIE ++  +P+ R+ L+F
Sbjct: 125 HIVVGTPGRIQEHLRKGTLKLDELKVLVLDEADRMLDMGFSEDIEDVVSYTPQDRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  ++  +Q+  ++V         +DI    +      R + +  +L  +   
Sbjct: 185 SATYPDGIERISSKFQRQPLKV-EIEGEDDIADIRQIFIEADKHQRLSLLAAVLYQYQPT 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VFC+T+         L       +AL+G+L Q++R   L    +G  RV +ATDVAA
Sbjct: 244 SCVVFCNTKRDCQDVCDDLKAKGISALALNGDLEQRDRDRVLVRFSNGSCRVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L LVI+ ELS +PE  +HR GRTGRAG  G++V ++      R   L      
Sbjct: 304 RGLDIKQLGLVINYELSFDPEVHVHRVGRTGRAGTSGLAVSLVTPQEMPRVTALEDYTRQ 363

Query: 366 SVVW 369
              W
Sbjct: 364 RFTW 367



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 427 GLCAPEEITPVSLVSG--RDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWL 484
            L  P+E+  V+ +    R RF     A  +           +   +  G K K     +
Sbjct: 344 SLVTPQEMPRVTALEDYTRQRFTWQPAAQALAAAPVALDPEMATLCIDGGRKAKIRPGDI 403

Query: 485 MPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +  L   +G+    +G I + P   +V +         + ++  K
Sbjct: 404 LGALTGDAGLTAAEVGKIDMFPVHAYVAIRQKSAKKALQRLQEGK 448


>gi|34498296|ref|NP_902511.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34104150|gb|AAQ60509.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 420

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 147/392 (37%), Positives = 206/392 (52%), Gaps = 8/392 (2%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++   P ++  AL E+ YV  T++Q A +   L+  DVL +AQTGSGKT AF L L  
Sbjct: 3   FASLGLQPDLVQSAL-EQDYVRPTAIQSAAIPAILQGGDVLATAQTGSGKTAAFCLPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRER 118
             L           P AL + PTRELA QVG  L  L         VAV  GGVS++ + 
Sbjct: 62  QWLDSPRAI--LRQPRALILLPTRELAAQVGDILRDLAQSLPRKLKVAVVYGGVSINPQM 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA IVV TPGRL D +    L +S +K +VLDEAD +LDLGF D++  +LD  P 
Sbjct: 120 MALRGGADIVVATPGRLLDLLDHNALRLSAVKTLVLDEADRLLDLGFADELGSVLDRLPP 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT  PA+  LA+   K  +R++I        DI  RA+ V    R   + ++
Sbjct: 180 ARQNLLFSATFPPAVRALAEKLLKQPLRIDIEHAAATAPDIRQRAIEVDAGKRTLLLRHL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       A+VF ++R +  R    L  +     AL G+ SQ +R  AL  ++ GR RV 
Sbjct: 240 LATRDWDKALVFVASRQAADRVADKLRRNGVPAAALHGDCSQGQRGQALADLKSGRLRVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  L LV++ +L  +P +  HR GRTGRAG +G ++  +  +       
Sbjct: 300 VATDVAARGIDIARLPLVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFVSADCAAHFRL 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           + +   + +  E     E      A   L DP
Sbjct: 360 IEKRQQLRLPRERIAGFEPTETAIAAASLTDP 391


>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 521

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 119/360 (33%), Positives = 188/360 (52%), Gaps = 6/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
             + +   + + GY   T +Q   +   L   D++  AQTGSGKT AF   +   L+ + 
Sbjct: 74  FDESLLNCIIKHGYTEPTGIQRQAVPVALSGHDLIGIAQTGSGKTAAFLWPMLVHLM-DQ 132

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                   P+ L +APTRELA Q+  E +       GV V V  GGVS + + ++L+ G 
Sbjct: 133 PELERGDGPIGLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYGGVSKNDQFKELRAGV 192

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D I+ K  N++ +  +VLDEAD+ML+LGF   +  I D     R+ L+F
Sbjct: 193 EILVATPGRLIDLIKMKATNLTRVTYLVLDEADQMLNLGFEPQVRSICDHIRPDRQTLLF 252

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--NILRYHG 243
           SAT    I  L +    +  R++I +  + +SDI    V++         +  ++ R   
Sbjct: 253 SATFRKRIEHLVRALLNNPTRISIGNVGQSNSDITQIPVVLENDGVKFGWLTAHLPRLVA 312

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRARVCIAT 301
               +VF S +A V      L+      V  AL G+L Q +R   L+  + G++RV ++T
Sbjct: 313 QGPVLVFVSRKAGVDELASNLSAAQIASVVGALHGDLMQAQRDQVLKEFKSGKSRVLVST 372

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+  ++ VI+ ++S + ++ +HR GRTGRAG KG +  +I     R A  L +
Sbjct: 373 DVASRGLDIKGVKTVINYDVSKDIDSYVHRIGRTGRAGEKGTAYTLITMQEDRFASDLVQ 432


>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
 gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
          Length = 383

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 200/371 (53%), Gaps = 6/371 (1%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +  A+   G+ ++T +Q+ +L   L   D +  AQTG+GKT AF +++ + 
Sbjct: 5   FETLNLHPQLKRAIDALGFKDMTPIQQKVLKFTLAGHDAIGRAQTGTGKTAAFLVSVIND 64

Query: 62  LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERR 119
           LL    +       P AL +APTRELA+Q+  + + L   +   VV +  G     ++ +
Sbjct: 65  LLNNPIQEQRYRGEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGGVDFDKQKAQ 124

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K
Sbjct: 125 LDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRK 184

Query: 180 RRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +    MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA SD+   + +
Sbjct: 185 EQRQTLMFSATFSYDVLNLAQQWLFEPVTVEIEPEKKTNADVEQRVYMVAKSDKYKLLQD 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR    +  ++F + R  V +    L    ++VV LSGE++Q +R   L   ++G+  +
Sbjct: 245 ILRDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGEIAQDKRLKMLDQFKNGQHNI 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++      
Sbjct: 305 MIATDVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTRGVSISFLSEDDAFYLP 364

Query: 358 RLFREANVSVV 368
            + +     + 
Sbjct: 365 EIEKAIGQKLP 375


>gi|229096653|ref|ZP_04227624.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
 gi|228686859|gb|EEL40766.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-29]
          Length = 389

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 184/370 (49%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A +   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAASDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|332218192|ref|XP_003258243.1| PREDICTED: nucleolar RNA helicase 2 isoform 1 [Nomascus leucogenys]
          Length = 783

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 141/592 (23%), Positives = 240/592 (40%), Gaps = 50/592 (8%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 188 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 247

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 248 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 305

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 306 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 365

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 366 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 425

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 485 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 544

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 545 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 601

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F        +   +       +W  L
Sbjct: 602 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNIS----YAWKEL 657

Query: 472 --SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              +G +  ++ + ++  L    G+                 +V    V  ++      +
Sbjct: 658 KEQLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSR 701

Query: 530 GIQLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
             QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 702 RWQLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752


>gi|331698451|ref|YP_004334690.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953140|gb|AEA26837.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
           CB1190]
          Length = 504

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 204/461 (44%), Gaps = 46/461 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L   G+     +Q A L   L  +D+L   QTGSGKT+AFGLAL S L    
Sbjct: 69  LPEAVLRTLDAEGFTAPFPIQAATLPVTLAGRDLLGRGQTGSGKTLAFGLALLSRL---A 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  P  L + PTRELA QV   L+      G+  A  +GG+S +R+   L  G  
Sbjct: 126 GGRAVARRPRGLVLVPTRELAQQVVDALDPFARALGLRAAAVVGGLSFNRQADALARGVD 185

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH   +  ++S ++   +DEAD M D+GF   +  ILD +P   + L+FS
Sbjct: 186 LLVATPGRLTDHTNQRTADLSGIEVTAIDEADRMADMGFLPQVRAILDLTPADGQRLLFS 245

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  D V   +AS       +D+  +LV    +    V          
Sbjct: 246 ATLDGDVAALVSRYLHDPVTRAVASATGAVDTMDHHLLLVDSVTKAR--VVAEIAARDGR 303

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V R+ + L         L G  SQ +R+ A+   ++GR  V +ATDVAAR
Sbjct: 304 TILFARTKHGVDRWVRNLRRDGVSAAGLHGGKSQNQRNRAIADFKEGRTPVLVATDVAAR 363

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +   +P++ LHR+GRT R G  G  V ++    +R  + L R+A V 
Sbjct: 364 GIHVDDVSLVVHIDPPGDPKDYLHRAGRTARGGESGTVVTLVTPEERRDVDTLTRQAGVR 423

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 P+V                                   HD    +A   R+  A
Sbjct: 424 ------PTV-----------------------------------HDAAPGSATLQRVTGA 442

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              +   +        + R +      + G G+    +G  
Sbjct: 443 REPSGIAVVEPRPAPQQPRGQGRRSRPRQGAGAPGGTQGGR 483


>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 478

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 203/401 (50%), Gaps = 12/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + GY  +T +Q A L P L  +D++  A TGSGKT AFGLAL   L    
Sbjct: 25  LAPEVLANLRQLGYERMTPIQAASLPPALLGRDLIAQASTGSGKTAAFGLALLERLNP-- 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL + PTRELA QV  E+  L   +  + V    GGV +  +   L++GA
Sbjct: 83  ----RRFAVQALVLCPTRELADQVASEIRRLARAQENIKVVTLCGGVPLRGQVASLEHGA 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L++  L   VLDEAD MLD+GF +DI  +    P  R+ L+F
Sbjct: 139 HVVVGTPGRVMDHLERGTLDLGALATFVLDEADRMLDMGFSEDIAQVARRCPDTRQTLLF 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  +A+ + KD  R+ + +++ +         +     R +A+  +L +   +
Sbjct: 199 SATYPDGIERIARQFMKDPQRIAVQAQHAEGKIEQRWYEVQERE-RLHAVSQLLNHFRPE 257

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +AI FC+T+       +VL    F  +AL G+L Q++R   L    +    V +ATDVAA
Sbjct: 258 SAIAFCNTKQQCRDLVEVLRAQGFSALALHGDLEQRDRDQVLVQFANRSCSVLVATDVAA 317

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L+ VI+ +++ +PE  +HR GRTGRA  +G+++ +       +  R+      
Sbjct: 318 RGIDIAGLQAVINVDVAPDPEVHIHRIGRTGRADAEGLALSLASLPEMGQVGRIEVLQGR 377

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
              W P   +           LQ P+    I G  K+ +  
Sbjct: 378 PSEWHPLSGLTPAPGG----PLQPPMATIQIIGGRKEKIRA 414



 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L +  A L    ++  + ++ GR              G        +   +  G K+
Sbjct: 352 AEGLALSLASLPEMGQVGRIEVLQGRPSEWHPLSGLTPAPGGPLQ-PPMATIQIIGGRKE 410

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQL 533
           K  A  ++  L    G  R+ +G I V    T+V     V+      L       + ++ 
Sbjct: 411 KIRAGDVLGALTGEMGFTREQVGKINVNDFSTYVAVERSVARQAAQRLSSGRVKGRSVKA 470

Query: 534 KYLGG 538
           + +  
Sbjct: 471 RLVED 475


>gi|195474915|ref|XP_002089735.1| GE19250 [Drosophila yakuba]
 gi|194175836|gb|EDW89447.1| GE19250 [Drosophila yakuba]
          Length = 527

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 224/502 (44%), Gaps = 42/502 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   I   +     +D    +  S+      +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFIKESSIFPIARDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++     
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L   R +  D +R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLKEIRRKRKLQQAESAASEEGKALLQDERFKSVDSARFEKKGK 484

Query: 458 GSRDNFKGSSWF----SLSVGS 475
           G     +G +       L+ G 
Sbjct: 485 GRSKATQGDTTTKPLKRLNKGK 506


>gi|170694034|ref|ZP_02885190.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
 gi|170141106|gb|EDT09278.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
          Length = 467

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L   N
Sbjct: 16  LPAATLANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLDTRN 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 76  ------FAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I            +    +E   ++ I  R   V   +R +A+  +L ++   
Sbjct: 190 SATYPEGI-VKLSQQFLRNPKEVKLAERHDNTKIRQRFYEVTEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   N   R   L +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGGLEQAHKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     +       +   L  P+    I G  K+ + 
Sbjct: 369 DVEWHKLSELTP----KSNEPLLPPMETLQILGGRKEKIR 404



 Score = 48.8 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      + +R
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGDAGFAGSQIGKINVTEMSTYVAVERSIAREAVR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|281358292|ref|ZP_06244774.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315119|gb|EFA99150.1| DEAD/DEAH box helicase domain protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 542

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 127/392 (32%), Positives = 201/392 (51%), Gaps = 14/392 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   T +Q   L   L  +D+   AQTG+GKT AF LA+ + LL   
Sbjct: 132 LHEDVQFGIQHAGFEYCTPIQALTLPALLEGRDLAGKAQTGTGKTAAFLLAVFTRLLNHP 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL +APTRELA+Q+ ++ E L   TG+   V  GG+   ++RR L+    
Sbjct: 192 LEERKPGCPRALVLAPTRELAMQIQKDAEVLEIFTGLTSVVVFGGMDHEKQRRSLEQPVD 251

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-- 184
           +V+GTPGR+ D+ RG  L +S ++ +V+DEAD MLD+GF  D++ I+   P+K       
Sbjct: 252 LVIGTPGRIIDYSRGGSLKLSKVEVLVIDEADRMLDMGFIPDVKRIVSQLPRKGERQTLL 311

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+   I  LA  +  + V V    E     +I+     V   ++   ++ ILR    
Sbjct: 312 FSATLEDHILRLASGWLAEPVIVESEPEKMVSENIEQTFYSVLRDEKLALLLYILRTEPY 371

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F + +    R    LA   ++V  LSG++ Q++R   L+  R G  ++ IATDVA
Sbjct: 372 DRVLIFGNRKDVNLRLQYDLARFGYEVPVLSGDIPQEKRIKVLERFRAGTEKIVIATDVA 431

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGI + D+ LVI+ +L    E+ +HR GRTGRAG  G S+  + +        + +  +
Sbjct: 432 ARGIHVDDVSLVINYDLPERAEDYVHRIGRTGRAGHNGKSISFLCEYGAYYLPDIEKLLD 491

Query: 365 VSV-----------VWEPAPSVEAIRERDAQR 385
           V             + EP P  + + +R+A R
Sbjct: 492 VQFHSTQPTEDMLKMPEPVPGAK-LPKREADR 522


>gi|330962153|gb|EGH62413.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 484

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 161 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQLEAR 220

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 221 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 280

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 281 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 341 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 401 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 460

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 461 KLGRKISCETPPT 473


>gi|218889195|ref|YP_002438059.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
 gi|218769418|emb|CAW25178.1| RNA helicase DbpA [Pseudomonas aeruginosa LESB58]
          Length = 458

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 205/405 (50%), Gaps = 15/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFGLAL S 
Sbjct: 6   FSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L              AL + PTRELA QV +E+  L      +  +   GGV    +   
Sbjct: 66  LNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVAS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH+VVGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P++R
Sbjct: 120 LEHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LAK +     R          S I+ R   +    R +A+V +L+
Sbjct: 180 QTLLFSATYPDGIEKLAKTF-MRDPRQVRVESLHADSQIEQRFFEIDPKQRMDAVVRLLQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++++ FC TR         L       +AL G+L Q+ER   L +  +    V +A
Sbjct: 239 HFRPQSSVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVFANRSCNVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ + 
Sbjct: 299 TDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + W     ++A  E      L  P+    I G  K  V 
Sbjct: 359 DLQKQPLAWYALGQLKASPE-----PLLPPMSTLCIAGGRKDKVR 398



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 23/71 (32%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
                   S   ++ G K K     L+  L   +G+   ++G I +     FV +     
Sbjct: 377 PEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIERGLA 436

Query: 519 DLLRRTVKLDK 529
               + +   K
Sbjct: 437 HQALKRLSEGK 447


>gi|254565179|ref|XP_002489700.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|238029496|emb|CAY67419.1| ATP-dependent RNA helicase [Pichia pastoris GS115]
 gi|328350119|emb|CCA36519.1| ATP-dependent RNA helicase DDX18 [Pichia pastoris CBS 7435]
          Length = 546

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 112/412 (27%), Positives = 196/412 (47%), Gaps = 10/412 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+   G+  +T+VQ   + P L  +DVL +A+TGSGKT+AF +     L   +
Sbjct: 91  LSEPTLKAIGNMGFTKMTAVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLY--S 148

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +   A+ I PTRELA+Q+      L         + IGG +   E   L  G +
Sbjct: 149 LKFKPRNGTGAIVITPTRELALQIFGVARELMESHSQTFGILIGGANRRAEAEKLMKGVN 208

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH++        +LKA+++DEAD +L++GF D+++ I+   P + R  M 
Sbjct: 209 IIIATPGRLLDHLQNTKGFIFKNLKALIIDEADRILEIGFEDEMKQIIKILPNENRQTML 268

Query: 186 SATISPAITTL----AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +             +       + V+  +E      ++   V+     R   + + L+ 
Sbjct: 269 FSATQTTKVEDLARVSLRKGPLYINVDSENETSTVDGLEQGYVVCDSDKRFLLLFSFLKR 328

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV  ++++L      V+ L G+  QQ+R+N      +    V I T
Sbjct: 329 NQKKKIIVFLSSCNSVKYYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNATQGVLICT 388

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ +I  +   +P + +HR GRT R    KG S+  +  +      R  
Sbjct: 389 DVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNGKGKSLMFLIPSELGFL-RYL 447

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           + A V +     P+ + A  +   +++++   +L+    D         A H
Sbjct: 448 KAAKVPLNEFEFPTNKIANVQSQLEKLIKSNYWLNQSARDGYTAYLQAYASH 499


>gi|332374956|gb|AEE62619.1| unknown [Dendroctonus ponderosae]
          Length = 588

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 163/380 (42%), Gaps = 18/380 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   +   E L + GY + T +Q+  +   L+ + +L  A TGSGKT AF + +  
Sbjct: 119 TFSDLKVKESTIENLRKCGYEDPTPIQKQAMPIMLQGRHLLACAPTGSGKTAAFLVPIIE 178

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERR 119
            L     +        AL + PTRELA Q  RE   L    G  + +         +   
Sbjct: 179 AL-----KEPQKQGFRALILCPTRELASQTQRECVRLSEGIGFRIHIIGKVNKALTQYGA 233

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGL-----NISHLKAVVLDEADEMLDLGFRDDIEFI-L 173
                  I++ TP RLC  ++         N+  L     D+  E     FRD ++ I  
Sbjct: 234 KSNKKYDILITTPNRLCFLLKQDPPAIQLSNVQWLVIDEADKLFEEGSRSFRDQLDQILQ 293

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RD 232
             S   R++ MFSAT +P +     +     +RV +   N     +D +   V     + 
Sbjct: 294 ACSSSDRKVAMFSATHTPVVAKWCVHNMPGLLRVTVGQRNAATDTVDQKLQFVGSEQGKL 353

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            AI +++R   +   ++F  ++    +    L      V A+  + +Q +R N ++  R+
Sbjct: 354 IAIRDLIRQGISPPVLIFVQSKERAQQLFNELIYDGIMVDAIHADRTQTQRDNVVKCFRE 413

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V I T++ ARGID   + LV++ +   +  + +HR GR GRAGR G +V    Q+ 
Sbjct: 414 GKIWVLICTELMARGIDFKGVNLVVNYDFPPSTISYVHRIGRAGRAGRTGKAVTFFTQDD 473

Query: 353 ---QRRAERLFREANVSVVW 369
               R    + +E+   V  
Sbjct: 474 TPLLRSVAHVLKESGCDVPE 493


>gi|327482576|gb|AEA85886.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri DSM 4166]
          Length = 460

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 141/529 (26%), Positives = 221/529 (41%), Gaps = 89/529 (16%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+AL   
Sbjct: 6   FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           L              AL + PTRELA QV +EL  L      + +    GGVS+  +   
Sbjct: 66  LNP------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIAS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH++VGTPGR+ +H++   L +  L  +VLDEAD MLD+GF D I  I+  +P KR
Sbjct: 120 LEHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   +I  LA ++ +   +V + S +      + R   +    R +A+  +L 
Sbjct: 180 QTLLFSATYPASIEQLAASFMRAPQQVRVESLHTDSQI-EQRFYEIDPEQRLDAVARLLA 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ + FC T+       + L        AL+G+L Q++R   L M  +    V +A
Sbjct: 239 SFRPESCVAFCFTKQQCQELVEYLNAKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ +PE  +HR GRTG                        
Sbjct: 299 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTG------------------------ 334

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R  N  +        EA R +  +++ + PL                   H  +++ A  
Sbjct: 335 RAGNQGLAASLVAPAEAHRAQAIEKLQKSPL-----------------NWHSLDELKA-- 375

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                               G             ++ G K K  
Sbjct: 376 ------------------------------------GAGAPLQPPMVTLCIAAGRKDKLR 399

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              ++  L   +G+    +G I +     FV V  D      + +   K
Sbjct: 400 PGDILGALTGDAGLPGSQVGKIAIFDFQAFVAVERDAAKQALKRLNEGK 448


>gi|146284217|ref|YP_001174370.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
 gi|145572422|gb|ABP81528.1| ATP-dependent RNA helicase DbpA [Pseudomonas stutzeri A1501]
          Length = 512

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 141/529 (26%), Positives = 221/529 (41%), Gaps = 89/529 (16%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+AL   
Sbjct: 58  FSTLPLSAAMLANLEALGYATMTPIQAQSLPLMLKGHDLIAQAKTGSGKTAAFGIALLDP 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           L              AL + PTRELA QV +EL  L      + +    GGVS+  +   
Sbjct: 118 LNP------RYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIAS 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH++VGTPGR+ +H++   L +  L  +VLDEAD MLD+GF D I  I+  +P KR
Sbjct: 172 LEHGAHVIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPAKR 231

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   +I  LA ++ +   +V + S +      + R   +    R +A+  +L 
Sbjct: 232 QTLLFSATYPASIEQLAASFMRAPQQVRVESLHTDSQI-EQRFYEIDPEQRLDAVARLLA 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ + FC T+       + L        AL+G+L Q++R   L M  +    V +A
Sbjct: 291 SFRPESCVAFCFTKQQCQELVEYLNGKGISAAALNGDLEQRDRDQVLAMFANRSLSVLVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ +PE  +HR GRTG                        
Sbjct: 351 TDVAARGLDIDALDMVINVELARDPEIHVHRIGRTG------------------------ 386

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           R  N  +        EA R +  +++ + PL                   H  +++ A  
Sbjct: 387 RAGNQGLAASLVAPAEAHRAQAIEKLQKSPL-----------------NWHSLDELKA-- 427

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
                                               G             ++ G K K  
Sbjct: 428 ------------------------------------GAGAPLQPPMVTLCIAAGRKDKLR 451

Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
              ++  L   +G+    +G I +     FV V  D      + +   K
Sbjct: 452 PGDILGALTGDAGLPGSQVGKIAIFDFQAFVAVERDAAKQALKRLNEGK 500


>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
 gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
          Length = 482

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 124/366 (33%), Positives = 187/366 (51%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   L  +G     ++QE  L+  L+  D++  A+TGSGKT+AFG+ +    ++  
Sbjct: 1   MHPEICAPLERKGITTPFAIQEMTLSVALQGTDLIGQARTGSGKTLAFGIPVVQRSVSPK 60

Query: 67  DRFS---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           DR     P   P AL +APTRELA+QV  E+  +    G+ V    GG     +   L+ 
Sbjct: 61  DRDYIDLPQGKPQALIVAPTRELAMQVSAEISMISEDRGLRVLTVYGGAGYEPQIEALEK 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D    K L++SH+ A+VLDEADEMLDLGF  D+E ++  +P+ R+ L
Sbjct: 121 GVDIVVGTPGRLIDLANRKVLDLSHVHALVLDEADEMLDLGFLPDVEKLVTLTPETRQTL 180

Query: 184 MFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+  AI     +       +R   A+E                 D+   I  +L+ 
Sbjct: 181 LFSATMPGAIVALARSYMRHPMNIRAESAAERETVPATAQFVYQAHDLDKPEMIGRLLQC 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+    R    LAE  F    L G++ Q  R   +Q  RDG+  V +AT
Sbjct: 241 EDHDKVVVFARTKRQAQRVADDLAERGFPASPLHGDMQQAARERVMQKFRDGKVEVLVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  V++     + +  +HR GRTGRAG  G++V ++      + + + +
Sbjct: 301 DVAARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGASGVAVTLVDWADLHKWKMINK 360

Query: 362 EANVSV 367
             ++  
Sbjct: 361 ALDLPF 366


>gi|329295987|ref|ZP_08253323.1| ATP-dependent RNA helicase RhlE [Plautia stali symbiont]
          Length = 408

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L  + 
Sbjct: 8   LNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQRLSEKP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  AAARGRRPVRALILTPTRELAAQVGENVREYSQYLNMRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      +++S ++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLIATPGRLLDLAHQNAVDLSQVEILVLDEADCMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+    +  +V +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKALAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMIGRDNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       +EP PS++A
Sbjct: 368 IPRIALPGFEPDPSIKA 384


>gi|52143321|ref|YP_083508.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|196039663|ref|ZP_03106967.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228958407|ref|ZP_04120130.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229091118|ref|ZP_04222341.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|300118169|ref|ZP_07055917.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
 gi|51976790|gb|AAU18340.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           E33L]
 gi|196029366|gb|EDX67969.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|228692249|gb|EEL45985.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-42]
 gi|228801265|gb|EEM48159.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|298724480|gb|EFI65174.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus SJ1]
          Length = 389

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPHLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|325676737|ref|ZP_08156410.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552285|gb|EGD21974.1| ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707]
          Length = 712

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 141/568 (24%), Positives = 234/568 (41%), Gaps = 57/568 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+       + +Q   +   +  K++L  AQTGSGKT+AFGL + + L    
Sbjct: 53  LPEPVVAALARNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARHE 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 113 DRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGVD 171

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 172 ILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLFS 231

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL + +  +    +        + +D+  +LV   D+D   +  +       
Sbjct: 232 ATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAV-LAEIASREGGR 290

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T+ L E      AL G  +Q +R+  L+  + GR  V +ATDVAAR
Sbjct: 291 TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAAR 350

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV+H +   + ++ LHR+GRT RAG  G+   ++  N +R   RL   A V+
Sbjct: 351 GIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGVN 410

Query: 367 VVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
               P  P  E                L +I G +    + +   +   +      R  R
Sbjct: 411 ATAVPVFPGSEE---------------LATITGAQAPSGEPVRDSYFRSE------RDSR 449

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
                           G  R   D R  +   G R   +             +       
Sbjct: 450 GDRRERSFGDRGPRREGGFRGNRDDRGPRRDFGDRGPRRDGDGGGFRGNRDDRG------ 503

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
                     R+  G    + + +F               + D+G   +   G++ +   
Sbjct: 504 ---------PRRDFGD---RDNRSF-------------GNRDDRGP--RRDFGDRDNRAP 536

Query: 546 YKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +  G    N  D   +R    +G  ++
Sbjct: 537 RRDGGGFRGNRDDRGPRRDFGDRGPRRD 564


>gi|229155721|ref|ZP_04283827.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
 gi|228627707|gb|EEK84428.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           4342]
          Length = 389

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAETSKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|260776996|ref|ZP_05885890.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606662|gb|EEX32936.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 449

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 173/373 (46%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L    +   T +Q+  +   +  KD+L S++TGSGKT+AF L +    L   
Sbjct: 14  LDNRLLKNLKHFDFKQATEIQQQAIPVSIAGKDLLASSKTGSGKTLAFVLPMLHKSL--K 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++   A  P  + +APTRELA QV  EL  +         + +GG + + + + L+    
Sbjct: 72  NKAFSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYDATLIVGGENFNDQVKALRRYPK 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + L +  L+ ++LDEAD MLDLGF  ++  I +      ++  M 
Sbjct: 132 FIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMF 191

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +            S            +   L  ++  +  IL    
Sbjct: 192 SATLDHAEVNEIAFEMLDAPKRIAIGVSNEEHKDITQKFYLCDHLDHKEAILERILEEAE 251

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +TR    R T  L E   + +ALSG L+Q +R+  +        ++ + TDV
Sbjct: 252 YKQLIIFTATRVDTERLTDKLNEKKLKAIALSGNLNQTQRNTIMSQFERAVFKILVTTDV 311

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V++ ++  + E  +HR GRTGRAG KG +V ++        +R+    
Sbjct: 312 ASRGLDIANVTHVVNFDMPKHTEEYVHRVGRTGRAGNKGDAVSLVGPKDWDSFKRVEAYL 371

Query: 364 NVSVVWEPAPSVE 376
              + +     ++
Sbjct: 372 QQDLTFSELEGLK 384


>gi|157876832|ref|XP_001686758.1| DEAD box RNA helicase [Leishmania major strain Friedlin]
 gi|68129833|emb|CAJ09139.1| putative DEAD box RNA helicase [Leishmania major strain Friedlin]
          Length = 657

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 11/396 (2%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +   
Sbjct: 169 LNPHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRS 228

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F P++   A+ I PTREL +Q+   L  L       +          R +   +   
Sbjct: 229 G--FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLAN 286

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I++                  +  +L  + +DEAD +LD GF +D+  I+   PK R+ 
Sbjct: 287 GIMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQT 346

Query: 183 LMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT +  +     ++ +     + +    +      ++   V+     R   + + +
Sbjct: 347 FLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCTSEQRLLVLYHFV 406

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V  
Sbjct: 407 KKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLF 466

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++  +    +   + L
Sbjct: 467 TTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELFLKYL 526

Query: 360 FREANVSVVWE--PAPSVEAIRERDAQRILQDPLFL 393
           + +A V V         ++   +   ++++    +L
Sbjct: 527 YDDAKVKVNEYIFDLTKLKENVQGQLEQLVSSNYYL 562


>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 643

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 214/420 (50%), Gaps = 17/420 (4%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A+ E  Y   T++Q   +   L+ KD+L S+ TGSGKT AF + +         R
Sbjct: 199 KPLLKAVEEMQYEFPTNIQSLAIPAALQGKDLLASSLTGSGKTAAFLIPILQKFY----R 254

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
               +   AL + PTRELA Q+      L   T +   + IG  ++ ++  +L+    ++
Sbjct: 255 SPFTNYSKALIVTPTRELAFQIYEVFTKLNKYTKLRACLVIGQSAMQKQEAELRGNPEVI 314

Query: 129 VGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           + TPGRL DH    + +++ +L+ ++ DEAD++LDLGF    + I+++  ++R+ L+FSA
Sbjct: 315 IATPGRLIDHLQNSRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIVENCNRERQTLLFSA 374

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGAKN 246
           T++  +  L     +  +R+    + + +  +      +     R+ A++ I   +  + 
Sbjct: 375 TLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQKMLRIQHEDFREAALLAIAAKYYKER 434

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R   +      +V  L G+L+Q +R  A    ++G+ +  +ATD+A+R
Sbjct: 435 TIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAFSDFKEGKYQYLMATDLASR 494

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  ++ VI+ EL S     +HR GRT RAG +G+S+ +      +  +++ +E    
Sbjct: 495 GLDIQGVKAVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLKENKDK 554

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
           ++ + + SVE +++           + + IQ  E+++V VL  +    ++    + + +A
Sbjct: 555 MMEKVSLSVETLQK-----------YKEKIQNVEREVVKVLEEEQAERQLRKAEMELQKA 603


>gi|73996626|ref|XP_863183.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 10 [Canis familiaris]
          Length = 812

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 122/396 (30%), Positives = 202/396 (51%), Gaps = 35/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L  TL+ 
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLLTLIE 455

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E+D+      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G
Sbjct: 456 ESDQ-----GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 510

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-------- 176
             IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+          
Sbjct: 511 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 570

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  
Sbjct: 571 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 630

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 631 VEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGK 690

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRA
Sbjct: 691 GQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRA 750

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           G+ G+++  + +        +F E   +++  P  S
Sbjct: 751 GKSGVAITFLTKEDS----AVFYELKQAILESPVSS 782


>gi|159117719|ref|XP_001709079.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
 gi|157437194|gb|EDO81405.1| Translation initiation factor eIF-4A, putative [Giardia lamblia
           ATCC 50803]
          Length = 391

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 106/366 (28%), Positives = 188/366 (51%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   +   GY   +++Q   + P +  KD +  AQ+G+GKT AF + +   +   
Sbjct: 26  NLHPDLLFGIFTYGYKIPSAIQSQAIVPIISGKDTIAQAQSGTGKTAAFTIGMLQRIDI- 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                   +P A+ ++PTRELA+Q  + ++ + ++  V VA CIGG  V  +        
Sbjct: 85  -----GLKSPQAIILSPTRELALQTLKVVDGIGSRLKVQVAQCIGGTQVDDDIAAA-QSC 138

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H++V TPGRL   ++ K +  S++K VVLDEADEML  GF + I  I+       ++++ 
Sbjct: 139 HLIVATPGRLLSLLQKKYVTTSNVKMVVLDEADEMLSRGFTEQIVSIMKFMNADIQIVLV 198

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+ P I  L + + +D V + +         I    V +  + +   + +I +    +
Sbjct: 199 SATLPPEILELTRQFMRDPVSILVKEAELTLDGIRQYVVELQDAWKTEVVEDIYKVLSVQ 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++FC++   V    + L      +  +  EL Q ER+  +   R G+ R+ IAT++ A
Sbjct: 259 QGVIFCNSIGRVKELAEKLKSAGHTLSCIHSELDQAERNKIMGEFRSGQTRILIATNIIA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++ LVI+ ++   PE  LHR GR+GR GRKG+++  +    ++  + +  + NV
Sbjct: 319 RGIDVQNVSLVINYDIPREPETYLHRIGRSGRFGRKGVAINFVTDKDKQSMQAITDKFNV 378

Query: 366 SVVWEP 371
           +    P
Sbjct: 379 TTENLP 384


>gi|145517995|ref|XP_001444875.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412308|emb|CAK77478.1| unnamed protein product [Paramecium tetraurelia]
          Length = 813

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 166/378 (43%), Gaps = 13/378 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K FE +P    + L  +     T +Q+AI    L  +DV+  A+TGSGKT+A+ L     
Sbjct: 434 KDFEFLPAEYQQILISKKITTPTPIQKAIFPLILEGRDVIAIAETGSGKTLAYALPGIIH 493

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ER 118
               +        P  L +APTRELA Q+  + E       V   V            + 
Sbjct: 494 ----SQAQPKVLGPRILVLAPTRELAQQIQSQYELFTRTCCVYGGVFKNLQYSEILGIKE 549

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +     V+ +           GL ++ +  VVLDEAD MLD+GF D I  IL +   
Sbjct: 550 SRNKINLPSVIISTPGRLLDFMKDGLPLNSITQVVLDEADRMLDMGFEDQITQILSAVRD 609

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L FSAT    +  LA +       +     +    +    + V++   ++      
Sbjct: 610 DRQTLFFSATWPNEVQRLANSLCNQDPIMIQLGEQGLSVNKNIQQEVIIVYENKFEKFAE 669

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      +  ++FC  +    +    L+ H  +   L G+L Q ER   +   + G    
Sbjct: 670 LTDRLKGQKLLIFCQKKLDTQKLEYRLSIHGLKARYLHGDLKQAERDQIMVEFKSGAINC 729

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-----PQNM 352
            I T++A+RG+D+ D+++VI+ +     E+ +HR GRTGRAG+KG ++ ++        +
Sbjct: 730 LITTNLASRGLDVSDVDVVINYDFPDTIEDYIHRIGRTGRAGKKGQAISLLEPAFFNNRL 789

Query: 353 QRRAERLFREANVSVVWE 370
           +    ++ ++++  +  E
Sbjct: 790 KNDLVQVLQQSDQVIPQE 807


>gi|152986227|ref|YP_001345953.1| ATP-dependent RNA helicase DbpA [Pseudomonas aeruginosa PA7]
 gi|150961385|gb|ABR83410.1| DEAD/DEAH box heliCase domain/helicase conserved domain/dbpa rna
           binding domain protein [Pseudomonas aeruginosa PA7]
          Length = 458

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 139/407 (34%), Positives = 210/407 (51%), Gaps = 15/407 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F ++P    +   L   GY  +T +Q   L   L+ +D++  A+TGSGKT AFGL L 
Sbjct: 4   TVFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGRDLIAQAKTGSGKTAAFGLGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L              AL + PTRELA QV +E+  L      +  +   GGV    + 
Sbjct: 64  APLNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQV 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAH+VVGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I+   P+
Sbjct: 118 ASLEHGAHVVVGTPGRIQEHLRKGTLVLDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPE 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  LAK + +D  +V + S +      + R   +    R +A+V +
Sbjct: 178 RRQTLLFSATYPDGIEKLAKAFMRDPQQVKVESLHTDSQI-EQRFFEIDPKQRMDAVVRL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L++   ++ + FC TR         L  H    +AL G+L Q+ER   L +  +    V 
Sbjct: 237 LQHFRPQSCVAFCQTRQQCQELADALKAHRISALALHGDLEQRERDQVLTVFANRSCTVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  LE VI+ EL+ +PE  +HR GR+GRAG KG+++ ++      RA+ 
Sbjct: 297 VATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQA 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       + W     ++A  E      L  P+    I G  K  V 
Sbjct: 357 IEDLQKQPLAWYALGQLKANPE-----PLLPPMSTLCIAGGRKDKVR 398



 Score = 58.8 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 456 GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV---- 511
                      S   ++ G K K     L+  L   +G+   ++G I +     FV    
Sbjct: 374 KANPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIER 433

Query: 512 EVSADGVDLLRRTVKLDKGIQLKYL 536
            ++   +  L       +  +++ L
Sbjct: 434 GLAHQALKRLSEGRIKGRSFKVRLL 458


>gi|293395719|ref|ZP_06640001.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
 gi|291421656|gb|EFE94903.1| ATP-independent RNA helicase DbpA [Serratia odorifera DSM 4582]
          Length = 445

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 131/357 (36%), Positives = 190/357 (53%), Gaps = 8/357 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
            L+E GY  +T VQ A L   L  +DV   A+TGSGKT AFG+ L   +           
Sbjct: 3   NLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGIGLLDKINVSQ------V 56

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           A  AL + PTRELA QV +EL  L   T  + +    GG  +  +   L +  HIVVGTP
Sbjct: 57  ATQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGAQLDSLVHAPHIVVGTP 116

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR+ +H+R K L +  +K +VLDEAD MLD+GF DDI+ ++  +P +R+ L+FSAT    
Sbjct: 117 GRIQEHLRKKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQTLLFSATYPAG 176

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           I  ++   Q+  +      +    + I  R        R   +V  +R+    + +VFC+
Sbjct: 177 IERISDRVQRAPL-SVEVDDGDAPTTIAQRFYETTRDQRPALLVAAIRHFQPTSCVVFCN 235

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+       + L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ D
Sbjct: 236 TKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKD 295

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           LELV++ ELS +PE  +HR GRTGRAG  G+++ +       RA  L    +  + W
Sbjct: 296 LELVVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMTRAHALEEYLDCKLQW 352



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 25/75 (33%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
            G  +       +   +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 359 SGASTAPLEAEMATLCIDGGRKAKIRPGDILGALTGEAGLTAAEVGKIDMFPVHAYVAIR 418

Query: 515 ADGVDLLRRTVKLDK 529
                   + ++  K
Sbjct: 419 KASARKALQQLQQGK 433


>gi|226183|prf||1413329A gene vasa
          Length = 660

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 5/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++  +I + +++ G+   T +Q+  +      +D++  AQTGSGKT AF L + S LL +
Sbjct: 251 DLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  + ++PTRELA+Q+  E      ++ + + +  GG S   +   +  G 
Sbjct: 311 PHELELGR-PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGC 369

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+V+ TPGRL D +    +     + VVLDEAD MLD+GF +D+  I+     +      
Sbjct: 370 HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL 429

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
             + +          +   +R               + +         + +  +    A 
Sbjct: 430 MFSATFPEEIQRMAGEFLKLRFVAIGIVGGRCSDVKQTIYEVNKYAKRSKLIEILSEQAD 489

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+         L+E  F   ++ G+  Q +R  AL+  ++G  +V IAT VA+
Sbjct: 490 GTIVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFKNGSMKVLIATSVAS 549

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFR 361
           RG+D+ +++ VI+ ++ S  ++ +HR GRTG  G  G +         R       ++  
Sbjct: 550 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNWGRAQSFFDPEKDRAIAADLVKILE 609

Query: 362 EANVSVV 368
            +  +V 
Sbjct: 610 GSGQTVP 616


>gi|291434996|ref|ZP_06574386.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291337891|gb|EFE64847.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 497

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS  G      +Q A L   L  +D+L   +TGSGKT+AFGL L +     
Sbjct: 60  ELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLLTR---T 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG+S+ R+  +L+ GA
Sbjct: 117 AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELRQGA 176

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  ++  VLDEAD+M DLGF   +  +LD      + ++F
Sbjct: 177 EVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQRMLF 236

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L +    D V  ++       + +++  ++V   DR    V         
Sbjct: 237 SATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYA--VTTEIAARDG 294

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAA
Sbjct: 295 RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVAA 354

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A +
Sbjct: 355 RGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRMMAGAGI 414

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  +A+
Sbjct: 415 E------PTVTRVRSGEAE 427


>gi|239926683|ref|ZP_04683636.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 471

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   LS  G      +Q A L   L  +D+L   +TGSGKT+AFGL L +     
Sbjct: 34  ELPVEVLRTLSGLGVREPFPIQAATLPDALEGRDILGRGRTGSGKTLAFGLPLLTR---T 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV + L        + +A  +GG+S+ R+  +L+ GA
Sbjct: 91  AGRRAEPKQPLALILVPTRELAQQVAQALAPYAEALRLRMATVVGGMSIGRQVAELRQGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  ++  VLDEAD+M DLGF   +  +LD      + ++F
Sbjct: 151 EVVVATPGRLHDLIERNACRLGRVRITVLDEADQMCDLGFLPQVVDVLDQVHPDGQRMLF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L +    D V  ++       + +++  ++V   DR    V         
Sbjct: 211 SATLDRDVDQLVRRCLHDPVVHSVDPSAGTVTTMEHHVLVVHGPDRYA--VTTEIAARDG 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V + T+ L        AL    SQ +R+  L   ++G+  V +AT+VAA
Sbjct: 269 RVLLFLDTKHAVDQLTRHLRASGVHAGALHSGKSQPQRTRTLAQFKNGQLTVLVATNVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+ + DL+LV++ +  ++P++ +HR+GRT RAG  G  V ++    +R   R+   A +
Sbjct: 329 RGLHVDDLDLVVNVDPPTDPKDYVHRAGRTARAGESGSVVTLVLSGQRRETSRMMAGAGI 388

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  +A+
Sbjct: 389 E------PTVTRVRSGEAE 401


>gi|213967088|ref|ZP_03395237.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
 gi|213927930|gb|EEB61476.1| atp dependent rna helicase [Pseudomonas syringae pv. tomato T1]
          Length = 486

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 103 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 162

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 163 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 222

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 223 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 282

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 283 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 342

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 343 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 402

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 403 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 462

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 463 KLGRKISCETPPT 475


>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
 gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
          Length = 638

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 222/486 (45%), Gaps = 38/486 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   L+   +   T +Q   +   L  KD++  A TGSGKT AF + +   L    
Sbjct: 84  LNRALLRGLAALNFSRPTPIQARTIPIALAGKDIVAGAVTGSGKTAAFLIPIMERLSYRQ 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                A +   + + PTRELA+Q     + L     V   +C+GG+S+  +  +L+    
Sbjct: 144 RSADDAKS-RVVVLCPTRELAIQCHSVAQALGKFMNVRFCLCVGGLSLKLQEAELKTRPD 202

Query: 127 IVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH+R      +  ++ +V+DEAD ML+ GF D++  I+   PK+R+ ++F
Sbjct: 203 VIIATPGRLIDHVRNSASFGMEDVEILVMDEADRMLEDGFEDELNEIVRLCPKQRQTMLF 262

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA--------------LSDR 231
           SAT++  +  L +   +  VR+ +  +    S +    V V                  R
Sbjct: 263 SATMTEDVDQLVRLSLRTPVRLFVDPKRSTASKLTQEFVRVRAQSRLTGHARQQAEDQHR 322

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +V +         I+F  ++    +   +          L G+LSQ++R  +L + R
Sbjct: 323 AAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQSLSLFR 382

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG+    +ATD+A+RGID+  ++ VI+ ++ +  E  LHR GRT RAGR+G +V ++ + 
Sbjct: 383 DGKVDFLLATDLASRGIDIRGVQTVINYDMPAQLEPYLHRVGRTARAGRQGRAVTLVGEP 442

Query: 352 MQRRAERLFREA---NVSVVWEPAPSVEAIRER------DAQRILQDPLFLDSIQGDEKK 402
            +R  + + +      V     P+  V+ + +       + ++ILQ+     +++  E +
Sbjct: 443 DRRLLKTVLKRTPPEQVKHRLMPSEMVQKLSDTIASLKPEVEQILQEEKEERALRQAEME 502

Query: 403 MV--DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLV---------SGRDRFRDDSR 451
           +   + ++A  D  +I A   R       A  +   VS             RDRF   SR
Sbjct: 503 VQKGENMMAHQD--EIYARPARTWFQSEKAKADAKQVSREQQNAKVDVSKARDRFAGLSR 560

Query: 452 AFKVGG 457
             K   
Sbjct: 561 RKKRNK 566


>gi|162533080|ref|NP_791083.3| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|32363284|sp|Q887N8|RHLB_PSESM RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28851702|gb|AAO54778.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 397

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 14  NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 73

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 74  PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 133

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 134 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 193

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 194 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 253

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 254 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 313

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 314 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 373

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 374 KLGRKISCETPPT 386


>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
 gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Oceanospirillum sp. MED92]
          Length = 417

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 117/376 (31%), Positives = 196/376 (52%), Gaps = 4/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +       LS  GY   T++Q+  +   L+  D++ +A+TGSGKT  F L L   L +  
Sbjct: 8   LSDFFTSTLSSLGYKEPTAIQDKAIPAVLKGHDLIAAAETGSGKTAGFVLPLLEKLHSIP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNG 124
              +  +   AL + PTRELAVQV + ++                GG +++ + + L  G
Sbjct: 68  APGNNLTH--ALVLVPTRELAVQVSQSVDRYSENCPRKIRSVAIYGGAAINPQMQSLSKG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D +R   L++  LKA+VLDEAD MLDLGF D+++ ILD +P   + L+
Sbjct: 126 CDIVVATPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L +   ++ V +++  E      +  RA+ V  ++R   + ++++    
Sbjct: 186 FSATFPDKVKELTEELLRNPVEISVKQEATLPDQLHQRAIEVDRNNRTMLLKHLIKQEKW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F  ++ + +     L     Q   L G+L+Q+ER  AL+    GR ++ IATD+A
Sbjct: 246 QQLLIFVGSKRTANNIELKLYRSGIQSSTLHGDLTQKERLGALEDFSKGRCKILIATDLA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L  V++ +L     + +HR+GRT RAG  G+++  +        + + +   
Sbjct: 306 ARGIDIPSLPCVLNYDLPRATSDYVHRAGRTARAGEAGLAISFVDHESDAHFKLIEKRIR 365

Query: 365 VSVVWEPAPSVEAIRE 380
           + +  E  P  E  +E
Sbjct: 366 MKIPREQIPGFERAQE 381


>gi|253681398|ref|ZP_04862195.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
 gi|253561110|gb|EES90562.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum D str. 1873]
          Length = 370

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 114/358 (31%), Positives = 184/358 (51%), Gaps = 7/358 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  I +   + L  +G    T +QE  ++      DV+  AQTG+GKT AF L + 
Sbjct: 1   MNFKELGISEDTIKVLKSQGITVPTPIQEKSMDLIKNGNDVIAEAQTGTGKTFAFLLPMF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +    ++         L + PTRELA+Q+  E   L     + +    GG  +  + +
Sbjct: 61  ENMSPNINKI------QGLIVTPTRELAIQITEEANKLKKAKDLNILAAYGGKDISSQLK 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   H+++ TPGRL DHI+   +NI  LK +VLDEAD+ML +GF++++E I+    KK
Sbjct: 115 KLKGNIHLIIATPGRLLDHIKRNTINIEKLKTIVLDEADQMLYMGFKNEVEEIMKHISKK 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            ++L FSAT++  +  LA  Y K+   V+I +E     +I    V      + +A+  +L
Sbjct: 175 TQILCFSATMNSQVKKLAYRYMKEPNVVSIQNEEVTLKNIKQAVVETTDRRKQDALCKVL 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A  AI+FC T+  V      L +  +    + G+L+Q +R   ++  ++   +  I
Sbjct: 235 DEDNAFMAIIFCRTKRRVDNLEAALHQRGYNCKKIHGDLTQSKRERVMKEFKNMDIQYLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           ATDVAARG+D+  +  V   ++  N E+ +HR GRTGRAG KG +   I    +R  +
Sbjct: 295 ATDVAARGLDISGVTHVYSYDIPENTESYIHRIGRTGRAGEKGETCLFIDPKDKRTLD 352


>gi|242240212|ref|YP_002988393.1| ATP-dependent RNA helicase SrmB [Dickeya dadantii Ech703]
 gi|242132269|gb|ACS86571.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
          Length = 446

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 116/392 (29%), Positives = 192/392 (48%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + EAL++ G+   T++Q A + P +  +D+L SA TG+GKT A+ L     LL  
Sbjct: 10  DLDESLLEALNDMGFKRPTAIQAAAIPPAMDGRDILGSAPTGTGKTAAYLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARTLAAHTHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       +  +   + ++LR   
Sbjct: 188 SATLEGNAVQDFAERLLNEPVSVEADPSRRERKKIQQWYYRADNIEHKTALLCHLLRQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+F   R  V      L +       L GE+ Q +R+ A+  + +GR  V +ATDV
Sbjct: 248 VTRSIIFVRKRERVHELVDWLRQAGIDACYLEGEMVQAKRNEAITRLSNGRVNVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +      ++ R  
Sbjct: 308 AARGLDILDISHVFNFDMPRTADIYLHRIGRTGRAGRKGCAISLVEAHDHLLLGKVSRYL 367

Query: 364 N----VSVVWEPAPSVEAIRERDAQRILQDPL 391
           N    + VV E  P+  A  E+   +  +  L
Sbjct: 368 NEPLKMRVVEELRPTTRAPSEKSTGKPSKKAL 399


>gi|116208202|ref|XP_001229910.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
 gi|88183991|gb|EAQ91459.1| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51]
          Length = 1453

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 215/482 (44%), Gaps = 19/482 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 282 SLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY- 340

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         + + PTRELA+Q       L + T +   + +GG+S+  +  +L+   
Sbjct: 341 --RPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRP 398

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 399 DVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 458

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  L +       R+ + S+ +    +    V +     +  +  +  Y   
Sbjct: 459 FSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQD 518

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
               V  ++   +        +     +A + E     +       RDG+    +ATD+A
Sbjct: 519 P---VHRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEPGSAFRDGKVNYLLATDLA 575

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+  ++ VI+ E   + E  +HR GRT RAGR G+++ +  +  ++  +   R   
Sbjct: 576 SRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAGK 635

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
                  +  ++A    DA +      + D I   + ++ ++L  + + +++A   +++ 
Sbjct: 636 AQGAKIISRVIDA---ADADK------WQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVK 686

Query: 425 RAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +    +   EEI      +  +   D  +A ++G    +  + +       G     + +
Sbjct: 687 KGENLIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMK-KKGAGRLSNKDKK 745

Query: 483 WL 484
            L
Sbjct: 746 KL 747


>gi|7573310|emb|CAB87628.1| DRH1 DEAD box protein-like [Arabidopsis thaliana]
          Length = 713

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +         
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMG 301

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L ++PTRELA Q+  E       + +  A   GG     + ++++ G  IVV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++AT    + 
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 421

Query: 195 TLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A +       V +    E   +  I     ++A  ++ + +  ILR     + I+   
Sbjct: 422 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFC 481

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   +           F   A+ G+ SQ ER + L   R GR  V +ATDVAARG+D+ D
Sbjct: 482 STKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKD 541

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE---ANVSVVW 369
           + +V++ +  +  E+ +HR GRTGRAG  G++         + A  L +    AN  V  
Sbjct: 542 IRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPP 601

Query: 370 E 370
           +
Sbjct: 602 Q 602


>gi|79513425|ref|NP_196965.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding / protein binding [Arabidopsis thaliana]
 gi|332004671|gb|AED92054.1| DEAD-box ATP-dependent RNA helicase 46 [Arabidopsis thaliana]
          Length = 712

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 7/361 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +         
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMG 301

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L ++PTRELA Q+  E       + +  A   GG     + ++++ G  IVV TPGR
Sbjct: 302 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGR 361

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++AT    + 
Sbjct: 362 LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVR 421

Query: 195 TLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A +       V +    E   +  I     ++A  ++ + +  ILR     + I+   
Sbjct: 422 KIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFC 481

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   +           F   A+ G+ SQ ER + L   R GR  V +ATDVAARG+D+ D
Sbjct: 482 STKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKD 541

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE---ANVSVVW 369
           + +V++ +  +  E+ +HR GRTGRAG  G++         + A  L +    AN  V  
Sbjct: 542 IRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPP 601

Query: 370 E 370
           +
Sbjct: 602 Q 602


>gi|229109595|ref|ZP_04239184.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
 gi|228673843|gb|EEL29098.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock1-15]
          Length = 389

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 184/370 (49%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++      A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKVAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|47226775|emb|CAG06617.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 558

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 141/358 (39%), Gaps = 10/358 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + + +++S+ GY   T VQ+  +      +D++  AQTGSGKT AF L +  
Sbjct: 170 TFDEAELCESLRKSISKSGYTKPTPVQKHGIPIIFAGRDLMACAQTGSGKTAAFLLPILQ 229

Query: 61  TLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L+A+      FS    P A+ +APTREL  Q+  E                        
Sbjct: 230 KLIADGVAASSFSELQEPEAIIVAPTRELISQIFLEARKFAFGXXXXXXXXXXXXXXXXX 289

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                                                         GF  D+  ++ S  
Sbjct: 290 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEPDMRRLVGSPG 349

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-----QHSDIDYRAVLVALSDRD 232
              +    +   S       +   +D +RV+             +D++   + ++   + 
Sbjct: 350 MPSKENRQTLMFSATFPEDIQRLARDFLRVDYIFLTVGIVGGACTDVEQSFIEMSKFSKR 409

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +++I+R  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R 
Sbjct: 410 EQLLDIVRATGMERTMVFVETKRQADFIAAHLCQENVPTTSIHGDREQREREMALANFRS 469

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           G+  V +AT VAARG+D+PD++ VI+ +L +N +  +HR GRTGR G  G +V     
Sbjct: 470 GKCPVLVATSVAARGLDIPDVQHVINFDLPNNIDEYVHRIGRTGRCGNVGRAVSFYDP 527


>gi|229513487|ref|ZP_04402951.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
 gi|229349364|gb|EEO14320.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TMA 21]
          Length = 439

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 127/389 (32%), Positives = 210/389 (53%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        A
Sbjct: 1   MGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRV------QA 54

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV  ++  L      + V    GG+ +  +   L++GAHI+VGTPGR+ 
Sbjct: 55  LVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++  +R+ L+FSAT   +I  +
Sbjct: 115 DHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAAAERQTLLFSATYPASIEQI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  
Sbjct: 175 AQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKRE 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V
Sbjct: 235 VQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++     P   
Sbjct: 295 FNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPA 354

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           A       R     +    I G +K  V 
Sbjct: 355 A-----GARPYAANMVTIQIDGGKKDKVR 378



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 321 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 380

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 381 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA 416


>gi|229524545|ref|ZP_04413950.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338126|gb|EEO03143.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae bv. albensis
           VL426]
          Length = 439

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 211/389 (54%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        A
Sbjct: 1   MGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRV------QA 54

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV  ++  L      + V    GG+ +  +   L++GAHI+VGTPGR+ 
Sbjct: 55  LVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT   +I  +
Sbjct: 115 DHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  
Sbjct: 175 AQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKRE 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V
Sbjct: 235 VQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++     P   
Sbjct: 295 FNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPA 354

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           A       R     +    I G +K  V 
Sbjct: 355 A-----GARPYAANMVTIQIDGGKKDKVR 378



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 28/96 (29%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 321 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 380

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            ++  L     +  + IG I + P   +V V     
Sbjct: 381 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA 416


>gi|156049233|ref|XP_001590583.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980]
 gi|160380617|sp|A7ESL8|DBP4_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp4
 gi|154692722|gb|EDN92460.1| hypothetical protein SS1G_08323 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 808

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 118/522 (22%), Positives = 208/522 (39%), Gaps = 30/522 (5%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +P        L    +  LT VQ   +   L+ KD+L +A+TGSGKT+AF + +
Sbjct: 48  IKNFSELPLSGPTSSGLEASHFKTLTDVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPV 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  +++      AL I+PTRELA+Q+   L  +         + IGG S+  ER
Sbjct: 108 LENLYRQ--KWTELDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEER 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    ++ +L+ +VLDEAD ++D+GF+  ++ IL+  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHMDQTAAFDVDNLQMLVLDEADRIMDMGFQTSVDAILEHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   K+   V +     +   + +     +V L ++ N + 
Sbjct: 226 QRQTMLFSATQTKKVSDLARLSLKEPEYVAVHEAASSATPTTLQQHYCVVPLPEKLNTLF 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
             +R +     IVF S+   V    + L      +  L     Q++ +           +
Sbjct: 286 GFIRANLKAKIIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQTARLDITSKFSSSK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R G+ G +V  + P   +
Sbjct: 346 NSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYGKVGRAVLFLDPSEEE 405

Query: 354 RRAERLFREA--NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----------EK 401
              +RL  +      +   P  + + I+ +      QDP      Q            +K
Sbjct: 406 GMLKRLEHKKVPIQKINIRPNKT-QDIKNQLQNMCFQDPELKYLGQKAFVSYAKSVFLQK 464

Query: 402 KMVDVLLAKHDPEKIAA-----GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
                 +   D E  A+     G  +I        + +      +      D     K  
Sbjct: 465 DKEIFNINDIDLEGYASSIGLPGAPKIKFQKGNDAKNVKNAPRAAIESSDEDSETEKKPK 524

Query: 457 GGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQS 498
                  K    F       Q   +     M+   + +    
Sbjct: 525 KKDEVRTKYDRMFER---RNQDVLSGHYSKMIADDTPMKDVD 563


>gi|313229621|emb|CBY18436.1| unnamed protein product [Oikopleura dioica]
          Length = 962

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 184/382 (48%), Gaps = 15/382 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +  +   I E L    Y   T +Q+  ++      D++ +AQTGSGKT A  + + +
Sbjct: 531 TFSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPIIN 590

Query: 61  TLLAENDRFSPASAPL---ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHR 116
            L   N      +A      + +APTRELA Q+  E  ++    T VV  +C GG     
Sbjct: 591 YLKMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTRE 650

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + ++ G +IV+GTPGR+ D +    ++ S  + +VLDEAD MLD GF  DI  I    
Sbjct: 651 QSQRIREGCNIVIGTPGRMKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAYL 710

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDR 231
           P K      +A  S    T  ++  +D +R N            ++ +  +   +   ++
Sbjct: 711 PPKDTGKRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKREK 770

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            N  V I + +  K  ++F +T+        +L     +   + G+  Q++R  A+  ++
Sbjct: 771 FNRTVEICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDLK 830

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             R  V +ATDVAARGID+ D+E+VI+ +     E+ +HR GRT R G+KG+++  I   
Sbjct: 831 ANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFIDAM 890

Query: 352 MQRR----AERLFREANVSVVW 369
             R+      ++ ++A  +V  
Sbjct: 891 KDRQHASSLVKICQDAKQTVPP 912


>gi|229507384|ref|ZP_04396889.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229509692|ref|ZP_04399173.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229516817|ref|ZP_04406263.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229521626|ref|ZP_04411044.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229527506|ref|ZP_04416898.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229606890|ref|YP_002877538.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
 gi|229335138|gb|EEO00623.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae 12129(1)]
 gi|229341220|gb|EEO06224.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae TM 11079-80]
 gi|229345880|gb|EEO10852.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae RC9]
 gi|229353166|gb|EEO18105.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae B33]
 gi|229354889|gb|EEO19810.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae BX 330286]
 gi|229369545|gb|ACQ59968.1| ATP-dependent RNA helicase DbpA [Vibrio cholerae MJ-1236]
          Length = 439

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 211/389 (54%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L+ +DV+   +TGSGKT AFGL + S L  +  R        A
Sbjct: 1   MGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRV------QA 54

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV  ++  L      + V    GG+ +  +   L++GAHI+VGTPGR+ 
Sbjct: 55  LVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    +++S L  +VLDEAD ML++GF++ +E I+ ++P +R+ L+FSAT   +I  +
Sbjct: 115 DHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFSATYPASIEQI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A++  ++A+ + + + +   S   Y   +   + RD A+  +L +H   +++VFC+T+  
Sbjct: 175 AQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTSSVVFCNTKRE 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
           V      L +  F V+ L G++ Q+ER  AL    +    + +ATDVAARG+D+ +L+ V
Sbjct: 235 VQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            + +LS +PE  +HR GRTGRAG KG++      N   R  ++    ++++     P   
Sbjct: 295 FNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPA 354

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           A       R     +    I G +K  V 
Sbjct: 355 A-----GARPYAANMVTIQIDGGKKDKVR 378



 Score = 55.0 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 5/117 (4%)

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +  +     E      +    D   + S   +   G+R          +  G K K    
Sbjct: 321 LAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPG 380

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGE 539
            ++  L     +  + IG I + P   +V V          T  L+K    K  G +
Sbjct: 381 DILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIA-----TKALNKIANGKMKGRQ 432


>gi|39970591|ref|XP_366686.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
 gi|149210055|ref|XP_001522402.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|86196464|gb|EAQ71102.1| hypothetical protein MGCH7_ch7g509 [Magnaporthe oryzae 70-15]
 gi|145017425|gb|EDK01788.1| hypothetical protein MGG_02762 [Magnaporthe oryzae 70-15]
          Length = 619

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 193/427 (45%), Gaps = 30/427 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + + +   GY   T +Q   +    +  DV+  AQTGSGKT AF + + + 
Sbjct: 124 FEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVINK 183

Query: 62  LLAENDRFS---------------PASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           L+ +  + +               P  A PL + + PTRELA+Q   E   L  ++ +  
Sbjct: 184 LMGKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSMLRP 243

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG 164
            V  GG +   + R +  G  I+  TPGRL   +     LN+  ++ VV+DEADEML   
Sbjct: 244 GVVYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLTAD 303

Query: 165 FRDDIEFILD---SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
           + +D++ I+    ++ + + +L  +           ++  +D V++ +      HS+I  
Sbjct: 304 WEEDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSNIIQ 363

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQ 280
             +  A  ++  A+ +++     +  I+F + + +          E      ++  + +Q
Sbjct: 364 TVIETAPMNKKRALNDLINSMPPQRTIIFVNNKWTADELDDYLYNECKLPCTSMHADRTQ 423

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTG 336
           +ER +AL+  R G A + + T V ARGID+ ++  V++ +L S      E   HR GRTG
Sbjct: 424 REREDALRAFRAGTAPILVTTGVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIGRTG 483

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFR---EANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
           R G KG++        +  A  L R   E N  +    +  +     R+  +   D  F 
Sbjct: 484 RIGNKGLATSFYTDRDEAIASVLVRTMLETNQEIPEFLSGYIPDGDARENLKFEADSDFE 543

Query: 394 DSIQGDE 400
           D++  D+
Sbjct: 544 DNVDADD 550


>gi|219120692|ref|XP_002181079.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407795|gb|EEC47731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 500

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 185/391 (47%), Gaps = 27/391 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     PQ I  +L ++G    T +Q   L   L  +D++  A TGSGKT+ FGL L  
Sbjct: 61  MK----FPQPILASLKQKGIARPTPIQMQGLPVALAGRDMVGIAFTGSGKTLTFGLPLVM 116

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGREL----------------EWLYAKTG 102
             L E  R   +P   P+ + +AP+RELA Q    +                E       
Sbjct: 117 AALEEELRMPIAPGEGPVGIILAPSRELARQTYELVSELATALTTPPAGDSREKNRYPQL 176

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
               +  G     + +   Q G H VV TPGRL D ++ K LN+   + + LDEAD MLD
Sbjct: 177 RTQLLIGGESVRDQVQTVQQQGIHCVVATPGRLRDLLKRKALNLMICRYICLDEADRMLD 236

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           LGF +++  I++  P +R+ L+FSAT        A+      + VN+      + D+   
Sbjct: 237 LGFDEEVGTIMNHFPHQRQTLLFSATFPKKFQDFARQTLVQPIVVNVGRAGAANLDVIQE 296

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              V    +   +++ L+       I+FC  +  V    + L     Q V++ G   Q+E
Sbjct: 297 VEYVKQEAKIVYLLHCLQKTAPP-VIIFCERKGDVDDIHEYLLLKGVQAVSIHGGKDQEE 355

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+ A+ + + G+  V IATDVAA+G+D   ++ VI+ ++ +  EN +HR GRTGR G+ G
Sbjct: 356 RNEAITLFKSGQKDVLIATDVAAKGLDFAAIQHVINFDMPTEIENYVHRIGRTGRCGKTG 415

Query: 343 MSVFVIPQNMQR----RAERLFREANVSVVW 369
           ++   I ++ +       + L REA   +  
Sbjct: 416 VATTFINKSCEETTLLDLKGLLREARQRIPP 446


>gi|6635383|gb|AAF19805.1| EIF4A protein [Brassica oleracea]
          Length = 354

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 116/353 (32%), Positives = 181/353 (51%), Gaps = 7/353 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   +++Q+  + P  +  DV+  AQ+G+GKT  F   +   L              AL 
Sbjct: 1   FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYT------LVQCQALV 54

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           +APTRELA Q+ + +  L    GV V  C+GG SV  ++R LQ+G H+VVGTPGR+ D +
Sbjct: 55  LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDML 114

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           R + L    +K  VLDEADEML  GF+D I  I    P K ++ +FSAT+ P    + + 
Sbjct: 115 RRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRK 174

Query: 200 YQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           +    VR+ +  +      I      +     +   + ++        +++F +TR  V 
Sbjct: 175 FMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 234

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
             T  +      V A  G++ Q  R   ++  R G +RV I TD+ ARGID+  + LVI+
Sbjct: 235 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 294

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +L + PEN LHR GR+GR GRKG+++  +  + +R    + +  NV V   P
Sbjct: 295 FDLPTQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQKFYNVVVEELP 347


>gi|228991148|ref|ZP_04151107.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
 gi|228768561|gb|EEM17165.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus pseudomycoides
           DSM 12442]
          Length = 389

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     + +  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMETVFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++      +         S +++  ++    ++++ I  ++   
Sbjct: 175 VFFSATMTKDAEEVARDF-AVEPELVRIKRTETKSLVEHTYIVCERREKNDYIRRVMHTG 233

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A+ F +    +    + L     +  AL  E ++QER   ++  R G+  + +ATD
Sbjct: 234 NVK-AVAFLNDPYRLDEIAEKLKYRKMKAAALHAEANKQEREATMRAFRQGKIEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIQFKKQEM 362


>gi|70994152|ref|XP_751923.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
 gi|74671396|sp|Q4WPE9|PRP28_ASPFU RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|66849557|gb|EAL89885.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
 gi|159125162|gb|EDP50279.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
          Length = 796

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 31/412 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + E + + GY   T +Q A +   L+ +D++  A TGSGKT +F L L
Sbjct: 363 MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL 422

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E        G  V   +GG S 
Sbjct: 423 LVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSF 482

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 483 EEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 542

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------- 220
           + P            + A     +  Q       + S   + +                 
Sbjct: 543 ALPVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGE 602

Query: 221 ------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
                  R  ++A  D+    +  +          IVF + + +     + + +  F  V
Sbjct: 603 AVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSV 662

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR 
Sbjct: 663 TLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI 722

Query: 333 GRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 723 GRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSK 774


>gi|223944961|gb|ACN26564.1| unknown [Zea mays]
          Length = 734

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 127/383 (33%), Positives = 197/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 323 ELLRAIDKAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 382

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  I
Sbjct: 383 EENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGLKVVSIVGGQSIEEQGFKIRQGCEI 442

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 +
Sbjct: 443 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 502

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S+
Sbjct: 503 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESE 562

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL   G K AIVFC+T+ +     K L +  F+V  L G  SQ +R  +L   
Sbjct: 563 KMPRLQKILTDLGDKTAIVFCNTKKTADMRAKDLDKAGFRVTTLHGGKSQDQREISLDGF 622

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 623 RNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGVASSFLTY 682

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 683 ENTDIFFDLKQMLMQSNSPVPPE 705


>gi|119500728|ref|XP_001267121.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
 gi|143359899|sp|A1CX72|PRP28_NEOFI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119415286|gb|EAW25224.1| DEAD/DEAH box helicase, putative [Neosartorya fischeri NRRL 181]
          Length = 796

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 191/412 (46%), Gaps = 31/412 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + E + + GY   T +Q A +   L+ +D++  A TGSGKT +F L L
Sbjct: 363 MRSWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL 422

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E        G  V   +GG S 
Sbjct: 423 LVYISELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSF 482

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 483 EEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 542

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------- 220
           + P            + A     +  Q       + S   + +                 
Sbjct: 543 ALPVTNEKPDTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGE 602

Query: 221 ------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
                  R  ++A  D+    +  +          IVF + + +     + + +  F  V
Sbjct: 603 AVDTVEQRVEMIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKQMGFSSV 662

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR 
Sbjct: 663 TLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSIESYTHRI 722

Query: 333 GRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 723 GRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSK 774


>gi|47214951|emb|CAG10773.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 557

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 167/386 (43%), Gaps = 42/386 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  + E +S++ +   T +Q       L  KD++  AQTGSGKT+A         L+  
Sbjct: 100 FPSYVMEVISKQNWTEPTPIQSQGWPVALGGKDMVGIAQTGSGKTLAVT---FHVCLSVC 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P+  P  L +APTRELA QV +        + +      GG     + RDL+ G  
Sbjct: 157 PSVPPSLRPKCLVLAPTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVE 216

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++         +  
Sbjct: 217 ICIATPGRLIDFLECGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRLSANHNILQ 276

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
                +                                 +   D+   ++  +       
Sbjct: 277 IVDVCSD--------------------------------MEKEDKLIRLLEEIMSEKENK 304

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T+ +    +  + + G+ SQQER   L   R G+A + IATDVA+R
Sbjct: 305 TIIFVETKRRCDELTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRYGKAPILIATDVASR 364

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREA 363
           G+D+ D++ VI+ +  ++ E+ +HR GRT R+ + G +      N  ++A  L    REA
Sbjct: 365 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAGDLISVLREA 424

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
           N ++     P +  + E    R++++
Sbjct: 425 NQAIN----PKLIQMAEDRGGRVVEE 446


>gi|330812282|ref|YP_004356744.1| ATP-independent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380390|gb|AEA71740.1| putative ATP-independent RNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 560

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 129/376 (34%), Positives = 203/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 107 FNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 167 I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIAS 220

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D IE I+  +P++R
Sbjct: 221 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIQQTPERR 280

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  +     +   A      + I+ R   ++  +R +A+V +L 
Sbjct: 281 QTLLFSATYPVGIKQLSSKF-MRNPQQVKAEAFHSDAQIEQRFYEISPEERMDAVVKVLA 339

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 340 HFRPASCVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 399

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG+++ ++  +   RA+ + 
Sbjct: 400 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAISLVAPSEAHRAQAIE 459

Query: 361 REANVSVVWEPAPSVE 376
           +     + W+   +++
Sbjct: 460 QLQKSPLSWDQLDNLK 475



 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EV 513
           G        S   +  G K K     ++  L   +GI    +G I +     +V     +
Sbjct: 478 GGGPLLPAMSTLCIGAGRKDKVRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERGI 537

Query: 514 SADGVDLLRRTVKLDKGIQLKYL 536
           +   +  L       + ++++ L
Sbjct: 538 AKQALQRLNDGKIKGRSLRVRIL 560


>gi|228920836|ref|ZP_04084175.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838767|gb|EEM84069.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 389

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKVEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
 gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
          Length = 1676

 Score =  177 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 125/488 (25%), Positives = 220/488 (45%), Gaps = 24/488 (4%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + I   L+   + N T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 796  NLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 855

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 856  PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLKKRP 912

Query: 126  HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 913  DVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 972

Query: 185  FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
            FSAT++ ++  L +      VR+ + ++      +              R   ++++ + 
Sbjct: 973  FSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLLHLCKE 1032

Query: 242  HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                  IVF   +    R   V      +   L G +SQ++R  +++  RDG     +AT
Sbjct: 1033 VYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGNVNFLLAT 1092

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+A+RG+D+  +E VI+ E   + E  +HR GRT RAGR G +  +  +  ++       
Sbjct: 1093 DLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRK------- 1145

Query: 362  EANVSVVWEPAPSVEAIRERDAQRILQDPLFLD--SIQGDEKKMVDVLLAKHDPEK-IAA 418
                 VV     + +A   +   R++   +  D  S   D ++ +D +L +   EK +A 
Sbjct: 1146 -----VVKAAVKAGKAQGAKIVSRVVDPSVADDWASKAKDMEEEIDAVLEEEKLEKQLAQ 1200

Query: 419  GFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
              +++ +    +    EI      +  +  R+   A K+G    +         LS   K
Sbjct: 1201 AEMQVTKGENLIKHEAEIKSRPKRTWFETEREKRVAKKIGAAELNGPSKKEKVKLSNKDK 1260

Query: 477  QKAEARWL 484
            ++ +A  L
Sbjct: 1261 KRLDAAKL 1268


>gi|269104240|ref|ZP_06156936.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160880|gb|EEZ39377.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 431

 Score =  177 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 203/396 (51%), Gaps = 11/396 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   Q +   ++E GY   T +Q  ++   L  +DV+  A TG+GKT AF L +
Sbjct: 7   LTSFTELALIQPLLARVTESGYQQPTPIQGQVIPNVLAGRDVIAGANTGAGKTAAFALPI 66

Query: 59  ASTLLAENDRFS----PASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGV 112
              L ++           +   AL + PTRELA QV   +    A     +  A   GGV
Sbjct: 67  LQELYSQKQSDQTHGRRGNFVSALVLVPTRELARQVADSITSYSAHFNGAIKTAAVYGGV 126

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S + +  +L++GA I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  +
Sbjct: 127 STNAQMLELRHGADILVATPGRLLDLVDHNAIKLDRVKTLVLDEADRMLSLGFTEELTNV 186

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L+  PK+++ L+FSAT    + +L ++   + V + I S++      +     V   ++ 
Sbjct: 187 LNQLPKQKQTLLFSATFPEQVQSLTQDLLNNPVEIQIQSDDASTI--EQHVYTVNKGEKT 244

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++++ +  + A+VF + + S     + L +   +     G+ +Q  R+  ++  + 
Sbjct: 245 AVLAHLIKQNQWRQALVFVAAKNSCKHLAEKLHKRGIEAEVFHGDKAQSSRTRIIEDFKS 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I    
Sbjct: 305 GKIEVLIATDIAARGLDIEKLPVVINVDLPRSPSDYMHRIGRSGRAGEAGLAISLIDYED 364

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
               + + ++  + +  E     E   E  A+++L 
Sbjct: 365 FHHFKVIEKKNKIRLEREQVAGFE-FDEAKAKKMLD 399


>gi|164658139|ref|XP_001730195.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
 gi|159104090|gb|EDP42981.1| hypothetical protein MGL_2577 [Malassezia globosa CBS 7966]
          Length = 480

 Score =  177 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 106/399 (26%), Positives = 179/399 (44%), Gaps = 23/399 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K F+++     + + +    Y   + +QE  L   L+   ++++  +Q+G+GKT AF L
Sbjct: 86  VKSFDDLGLHADLLKGIYAMKYTKPSKIQERALPLLLQNPPRNMIGQSQSGTGKTAAFVL 145

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + S +    D+      P ALA+AP+RELA Q+   ++ +   T V  A          
Sbjct: 146 TMLSRIDFSVDK------PQALALAPSRELARQIMDVVQEMGKYTPVKTA----FAIPDA 195

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILD 174
            +R  +  AH+VVGTPG+  D I+ + L+ S +K  VLDEAD MLD     +  I     
Sbjct: 196 MKRGEKVQAHLVVGTPGKTFDLIKTRALDPSGVKVFVLDEADNMLDQQGLGEQSIRVKNT 255

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                + +L  +       T   K             E    S   +         +   
Sbjct: 256 MPKTCQLVLFSATFPEHVRTFAVKFAPNANEIRLKQEELSVESIRQFYMDCKTEEHKYEV 315

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +V +        +I+FC+ R +  +  + +     +V +L G+L    R   +   R G+
Sbjct: 316 LVELYNLLTIGQSIIFCAKRDTADKIAQRMTAEGHRVDSLHGKLDTAARDRTIDEFRSGK 375

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI 348
            +V IAT+V ARGID+  + LVI+ ++        + E  LHR GRTGR GRKG+S+  +
Sbjct: 376 CKVLIATNVIARGIDIQQVTLVINYDMPLTQQGDPDAETYLHRIGRTGRFGRKGVSINFV 435

Query: 349 PQNMQRR-AERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             +  RR  E + R  +  +V      +EA+     + +
Sbjct: 436 HDDTSRRQMESIERALHCHIVPVQTDDLEAMESTIKEAL 474


>gi|30020240|ref|NP_831871.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30262130|ref|NP_844507.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47527402|ref|YP_018751.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47566879|ref|ZP_00237597.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49184972|ref|YP_028224.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481521|ref|YP_036269.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319414|ref|ZP_00392373.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118477548|ref|YP_894699.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870274|ref|ZP_02214930.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167632786|ref|ZP_02391112.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638259|ref|ZP_02396536.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170686363|ref|ZP_02877584.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|170706085|ref|ZP_02896547.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|177650849|ref|ZP_02933746.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190567856|ref|ZP_03020767.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196036903|ref|ZP_03104288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196046115|ref|ZP_03113343.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206972062|ref|ZP_03233010.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206975047|ref|ZP_03235961.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217959604|ref|YP_002338156.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218231862|ref|YP_002366836.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218903259|ref|YP_002451093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|222095747|ref|YP_002529804.1| ATP-dependent RNA helicase (d-e-a-d box family) [Bacillus cereus
           Q1]
 gi|225864093|ref|YP_002749471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227815071|ref|YP_002815080.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228914725|ref|ZP_04078334.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927197|ref|ZP_04090260.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933452|ref|ZP_04096305.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945743|ref|ZP_04108090.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956133|ref|ZP_04118019.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228985230|ref|ZP_04145395.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229043887|ref|ZP_04191583.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|229069681|ref|ZP_04202967.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|229079319|ref|ZP_04211863.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|229121683|ref|ZP_04250906.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|229127547|ref|ZP_04256538.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|229138830|ref|ZP_04267411.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|229144746|ref|ZP_04273145.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|229150373|ref|ZP_04278590.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|229178524|ref|ZP_04305889.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|229184351|ref|ZP_04311558.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|229190238|ref|ZP_04317240.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|229196367|ref|ZP_04323115.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|229600206|ref|YP_002866487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684699|ref|ZP_05148559.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254720956|ref|ZP_05182747.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254737143|ref|ZP_05194847.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743671|ref|ZP_05201356.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254751458|ref|ZP_05203495.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254758331|ref|ZP_05210358.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|296502724|ref|YP_003664424.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|301053653|ref|YP_003791864.1| ATP-dependent RNA helicase [Bacillus anthracis CI]
 gi|29895790|gb|AAP09072.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|30256756|gb|AAP25993.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47502550|gb|AAT31226.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|47556508|gb|EAL14841.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|49178899|gb|AAT54275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49333077|gb|AAT63723.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118416773|gb|ABK85192.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714162|gb|EDR19683.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513560|gb|EDR88929.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167531598|gb|EDR94263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170129087|gb|EDS97952.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0389]
 gi|170669439|gb|EDT20181.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|172083310|gb|EDT68371.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0174]
 gi|190560911|gb|EDV14885.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195990488|gb|EDX54471.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196023170|gb|EDX61849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|206732985|gb|EDZ50159.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206746468|gb|EDZ57861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           H3081.97]
 gi|217065161|gb|ACJ79411.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|218159819|gb|ACK59811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|218535161|gb|ACK87559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|221239805|gb|ACM12515.1| ATP-dependent RNA helicase (D-E-A-D box family) [Bacillus cereus
           Q1]
 gi|225790511|gb|ACO30728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227006946|gb|ACP16689.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228587221|gb|EEK45291.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1293]
 gi|228593222|gb|EEK51039.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus ATCC
           10876]
 gi|228599147|gb|EEK56760.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus BGSC
           6E1]
 gi|228604928|gb|EEK62384.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 172560W]
 gi|228633070|gb|EEK89682.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus m1550]
 gi|228638707|gb|EEK95138.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST24]
 gi|228644746|gb|EEL00997.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-ST26]
 gi|228655893|gb|EEL11740.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           BDRD-Cer4]
 gi|228661727|gb|EEL17344.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus 95/8201]
 gi|228703987|gb|EEL56429.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock4-2]
 gi|228713421|gb|EEL65310.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus F65185]
 gi|228725418|gb|EEL76679.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH676]
 gi|228774525|gb|EEM22926.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228803570|gb|EEM50303.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228813964|gb|EEM60238.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826181|gb|EEM71961.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832523|gb|EEM78097.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845044|gb|EEM90086.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229264614|gb|ACQ46251.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|296323776|gb|ADH06704.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|300375822|gb|ADK04726.1| ATP-dependent RNA helicase [Bacillus cereus biovar anthracis str.
           CI]
 gi|324326167|gb|ADY21427.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 389

 Score =  177 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R++
Sbjct: 115 KHPRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|327353874|gb|EGE82731.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ATCC 18188]
          Length = 585

 Score =  177 bits (447), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 98/413 (23%), Positives = 181/413 (43%), Gaps = 35/413 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 130 VKSFDDAGLHPVMRENIKLCGYNVPTPIQAYAIPAVLAGNDLIAVAQTGSGKTAAFLIPV 189

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 190 LSKLMGKAKKLAARRPDLGNGFNESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 249

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADEML
Sbjct: 250 LRPCVVYGGGPSREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKFTIIDEADEML 309

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  ++  ++     +     R M+  +           K    D VR+ I      H
Sbjct: 310 HSDWEIELNKLMSGGDTNEDADHRYMMFSATFNKGCRELARKYLAADHVRIRIGRAGSAH 369

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  +        +  AI ++L        +VF +++A        L        ++  
Sbjct: 370 LNVSQKIYYTDDDKKKEAIYDLLLSMPPSRTLVFVNSKAQADLLDDYLYNMGLPSTSIHS 429

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +HR 
Sbjct: 430 DRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSAAHGGIEEYIHRI 489

Query: 333 GRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAI 378
           GRT R G +G++          ++     ++  E    V        P  + +
Sbjct: 490 GRTARIGNEGLASSFYNHERNSDIAADLVKILLECKQPVPDFLESEKPEGDDV 542


>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
           Hxd3]
          Length = 425

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 9/373 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE       +   + E GY   T +Q   + P +  +DV+  AQTG+GKT AF L +   
Sbjct: 3   FEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPILHR 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+             AL +APTRELA Q  + +  L  KTG+  A   GGV +  + + L
Sbjct: 63  LMKGQKG-----GIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IVV  PGRL DHI  +  N+S L+ +V+DEAD++ D+GF  DI+ IL   PK+R+
Sbjct: 118 -KKVDIVVACPGRLLDHIGRRTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQ 176

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   I  LA +  ++   V           + +    VA   +   ++++L+ 
Sbjct: 177 TLLFSATMPAEIRKLAADILQNPATV-QVGNEAPADTVSHALYPVAQHLKTAFLLDLLKQ 235

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A++ +VF  T+       + LA   F+  +L G LSQ +R  AL   R G  ++ +AT
Sbjct: 236 TQARSVLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILVAT 295

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ ++ S PE  +HR GRTGRA   G +   I    +     + R
Sbjct: 296 DIAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGEDRNMVRAINR 355

Query: 362 EANVSVVWEPAPS 374
                +      S
Sbjct: 356 LLGSEIEQRTLES 368


>gi|303271399|ref|XP_003055061.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463035|gb|EEH60313.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 733

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 196/403 (48%), Gaps = 33/403 (8%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M+ +E    +P+ I  A+ + GY   + +Q A +   L ++DV+  A+TGSGKT AF + 
Sbjct: 295 MRCWEETSLLPEKILRAIQKVGYAKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVP 354

Query: 58  LASTLLAENDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + + ++          A  P AL +APTRELA Q+  E           V   +GG S+ 
Sbjct: 355 MLAYIMELPVMTDEVAAHGPYALVMAPTRELAQQIEEETTKFAHFLNYRVTSVVGGQSIE 414

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ G  IV+GTPGR+ D +  +   +     +VLDEAD M+D+GF   +  ++DS
Sbjct: 415 DQGFKLRRGCEIVIGTPGRVIDVLERRYTVLQQCNYIVLDEADRMIDMGFEPQVMSVMDS 474

Query: 176 S-------------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
                                      + R   MFSAT+ P++  LA+ Y ++   VNI 
Sbjct: 475 MSADNLKPIDEAETIDAGGLEAGAAGTRYRMTYMFSATMPPSVERLARKYLRNPAVVNIG 534

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
           S  +    I    + +    ++  +  +L  +    AIVF +T+ +V     +  +  + 
Sbjct: 535 SAGKTSDLIKQVVMWMTRGAKETQLELVLSRYPDTQAIVFVNTKRAVDHVQSLCVKQGYS 594

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
           V ++ G  SQ +R ++L+  + G   + +ATDVA RGID+ D++LV++ E+    EN  H
Sbjct: 595 VASIHGGKSQDQREDSLKGFKAGEYDILVATDVAGRGIDVKDIDLVVNYEMPLVIENYTH 654

Query: 331 RSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWE 370
           R GRTGRAGR+G +V  I           + L   +  +V  E
Sbjct: 655 RIGRTGRAGRQGTAVSFITSEDTDVMYDLKELLTNSGNAVPPE 697


>gi|205374127|ref|ZP_03226927.1| DEAD-box ATP dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 393

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 108/362 (29%), Positives = 183/362 (50%), Gaps = 9/362 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            KIFE +   I +A+ + GY   T +Q+ I+   L     +  +QTG+GKT+A+ L +  
Sbjct: 6   FKIFE-LKPFINKAIEKAGYKEPTEIQQLIIPIALNGDSAIGQSQTGTGKTLAYLLPILE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRER 118
           ++    D         A+  APTRELA Q+  E   L   +   +   + IGG    R  
Sbjct: 65  SINPNKDEV------QAVITAPTRELAQQIFTEAMKLAEFSEEEITGKLFIGGTDKQRSI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+   H+VVGTPGR+ D +  + LN+     +V+DEAD MLD+GF  D++ I    PK
Sbjct: 119 EKLKKQPHLVVGTPGRIKDLVNEQALNVFSANMLVVDEADLMLDMGFIHDVDQIAGRMPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++L+FSATI   +      Y ++    N+  +    ++I++  +     ++   +  I
Sbjct: 179 DLQILVFSATIPEKLKPFLNKYMENPEYANVQPKQATAANIEHILIPKRSREKVAVVETI 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AI+F +T+         L++   +V  L G L+ +ER+  ++ +R+   +  
Sbjct: 239 LSGINPYLAIIFTNTKVKADEVAAALSKRGIKVGRLHGGLTPRERTKEMKAIRNLEYQYI 298

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  +I+ EL  + +  +HR GRT RAG  G++  +   + +    R
Sbjct: 299 VATDLAARGIDIDGVSHIINYELPQDLDFYIHRVGRTARAGLTGVAFTIYEVSDEDALNR 358

Query: 359 LF 360
           L 
Sbjct: 359 LE 360


>gi|194863293|ref|XP_001970368.1| GG23409 [Drosophila erecta]
 gi|190662235|gb|EDV59427.1| GG23409 [Drosophila erecta]
          Length = 526

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 144/490 (29%), Positives = 225/490 (45%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PKKR+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKKRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   I   +      D    +  S+      +D R +L A  DRD  ++  LR +  
Sbjct: 188 SATMKDFIKESSIFPIASDCFEWSQDSDVATVDTLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENESANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQVRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++     
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L+  R +  D+ R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLKEIRRKRKLQQAESAASEEGKALLLDERFKSVDNGRFEKKGK 484

Query: 458 GSRDNFKGSS 467
           G     +G +
Sbjct: 485 GRSRAAQGDT 494


>gi|332218194|ref|XP_003258244.1| PREDICTED: nucleolar RNA helicase 2 isoform 2 [Nomascus leucogenys]
          Length = 715

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 139/590 (23%), Positives = 238/590 (40%), Gaps = 46/590 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 120 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 179

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E         P  L +APTRELA QV ++   +  K    VA   GG     +   +
Sbjct: 180 LHEELQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLS--VACFYGGTPYGGQFERM 237

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 238 RNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 297

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 298 EDDPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 357

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 358 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFR 416

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 417 NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHK 476

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 477 EEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 533

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 534 IEEKGAVEALAAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKE 591

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G +  ++ + ++  L    G+                 +V    V  ++      +  
Sbjct: 592 QLGEEIDSKVKGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWHDSRRW 635

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +           G +    Q    +RF+  +  S+
Sbjct: 636 QLSVAT-EQPELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 684


>gi|301386366|ref|ZP_07234784.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060652|ref|ZP_07252193.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           K40]
 gi|302133062|ref|ZP_07259052.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 484

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 161 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 220

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 221 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 280

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 281 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 341 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 401 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 460

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 461 KLGRKISCETPPT 473


>gi|294657726|ref|XP_460025.2| DEHA2E16632p [Debaryomyces hansenii CBS767]
 gi|218511815|sp|Q6BP45|ROK1_DEBHA RecName: Full=ATP-dependent RNA helicase ROK1
 gi|199432904|emb|CAG88281.2| DEHA2E16632p [Debaryomyces hansenii]
          Length = 550

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 11/374 (2%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            FE++       + +   L + G+   T +Q+  +   L  +D++  A TGSGKT+AF +
Sbjct: 111 SFEDLIGRYKLDKKLLSNLIDAGFTEPTPIQDEAIPISLEGRDLIACAPTGSGKTLAFLI 170

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L  T+L  N           L I+PT ELAVQ+ +EL  +     + + +    ++   
Sbjct: 171 PLVQTILQSNPNVK-NYGIRGLIISPTNELAVQIFQELNTMTKGKKMKIGILSKQLANKI 229

Query: 117 ERRDLQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILD 174
             + + +    I+V TP RL D I+ + +++S ++ +V+DE D++ D GF +   E + +
Sbjct: 230 NNKIINSSKYDILVSTPLRLIDSIKNETISLSKVEQLVIDETDKLFDQGFVEQTDEILSN 289

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            +  K R  MFSATI   +  +A++  KD +RV I  +    + I+ + V     +    
Sbjct: 290 CTNTKLRKSMFSATIPSGVEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLL 349

Query: 235 IVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            +  +          I+F  +          L      V  +  E + ++R   ++  + 
Sbjct: 350 AIRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKS 409

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V I TDV ARG+D   + LVI+ ++  + +  +HR GRTGR G+ G +V    +  
Sbjct: 410 GDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKED 469

Query: 353 QRRAERLFREANVS 366
            +  + +      S
Sbjct: 470 DKAVKPIINVMKQS 483


>gi|313221011|emb|CBY31843.1| unnamed protein product [Oikopleura dioica]
          Length = 497

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 185/383 (48%), Gaps = 15/383 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +  +   I E L    Y   T +Q+  ++      D++ +AQTGSGKT A  + + 
Sbjct: 65  QTFSDMKLCPEIMENLQRMKYTKPTPIQQYAVSILGSGSDLMATAQTGSGKTAAMMIPII 124

Query: 60  STLLAENDRFSPASAPL---ALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVH 115
           + L   N      +A      + +APTRELA Q+  E  ++    T VV  +C GG    
Sbjct: 125 NYLRMSNIGSRGYNACQKVDCIVVAPTRELATQLYDECYKFCGRNTNVVPGLCYGGTGTR 184

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + ++ G +IV+GTPGRL D +    ++ S  + +VLDEAD MLD GF  DI  I   
Sbjct: 185 EQSQRIREGCNIVIGTPGRLKDFLEKGVIDASEAQFLVLDEADRMLDQGFGPDIREINAY 244

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSD 230
            P K      +A  S    T  ++  +D +R N            ++ +  +   +   +
Sbjct: 245 LPPKDTGKRTTALFSATFETAIQSAAQDYLRPNYIFVAIGIIGGANTAVTQQFEQLQKRE 304

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + N  V I + +  K  ++F +T+        +L     +   + G+  Q++R  A+  +
Sbjct: 305 KFNRTVEICKQNQGKRTLIFVATKIFADSLGSMLVGDGIKATTIHGDRQQRDREQAINDL 364

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +  R  V +ATDVAARGID+ D+E+VI+ +     E+ +HR GRT R G+KG+++  I  
Sbjct: 365 KANRMHVLVATDVAARGIDIDDVEVVINFDFPKELESYIHRIGRTARKGKKGLAITFIDA 424

Query: 351 NMQRR----AERLFREANVSVVW 369
              R+      ++ ++A  +V  
Sbjct: 425 MKDRQHASSLVKICQDAKQTVPP 447


>gi|157149988|ref|YP_001449893.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074782|gb|ABV09465.1| ATP-dependent RNA helicase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 447

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 199/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  + D          +  AP+RELA Q+ +    + + +   + V           +
Sbjct: 61  QKLNEDEDHV------QVVITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKTRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S 
Sbjct: 115 IDKLEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   V     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIENWLVSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I R      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 EISRILQPYLAMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             +++++  F D+   D +   +    K D E I
Sbjct: 355 RELEK---LGIKFIP-------------KMIKNGEFQDTYDRDRRANREKSYEKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|119718785|ref|YP_925750.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119539446|gb|ABL84063.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 507

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 186/365 (50%), Gaps = 5/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +   L++RG V  T +Q A L   L  +DVL   +TGSGKT AF L L + 
Sbjct: 10  FADLGVPASLAAVLADRGIVQPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPLVAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A   R + A  P AL +APTREL  Q+   L+ L    G+      GGV  + + + L
Sbjct: 70  LTASG-RPAQARKPRALVLAPTRELVNQIEEALKPLARTAGLTTQTVFGGVGQNPQVQGL 128

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IV+  PGRL D I     ++S ++  VLDEAD M DLGF   +  I+D +P+  +
Sbjct: 129 RRGADIVLACPGRLEDLIGQGHCDLSQVEITVLDEADHMADLGFLPGVRRIMDRTPRDGQ 188

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+  AI  L K + ++ V     S     + +D+  + VA   R   +V+    
Sbjct: 189 RLLFSATLDKAIDVLVKRFLRNPVTHQADSAQSPVATMDHHVLHVAREHRVPVLVD--LT 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF  T+       + L +     V L G LSQ  R+  +     GRA   +AT
Sbjct: 247 SAPGRTVVFTRTKYGAKALARQLNKSGVPAVELHGNLSQGARTRNMDAFHTGRASTLVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGI + D+ LV+HA+     +  LHRSGRT RAG +G  + ++  +  R    L R
Sbjct: 307 DIAARGIHVDDVALVVHADPPVEHKAYLHRSGRTARAGARGTVITLMTDDQVRDVRDLTR 366

Query: 362 EANVS 366
            A + 
Sbjct: 367 AAGIK 371


>gi|306826916|ref|ZP_07460216.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430934|gb|EFM33943.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           pyogenes ATCC 10782]
          Length = 453

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 198/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q I +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYIQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +       + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKDQK 444


>gi|302835956|ref|XP_002949539.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
 gi|300265366|gb|EFJ49558.1| hypothetical protein VOLCADRAFT_42311 [Volvox carteri f.
           nagariensis]
          Length = 423

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 110/380 (28%), Positives = 179/380 (47%), Gaps = 13/380 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +       G    T VQ   +   L+ +DV+  AQTGSGKT AF L +   L  + 
Sbjct: 45  LSEWLCGVCKSLGMNTPTEVQRGCIPAILQGRDVIGLAQTGSGKTAAFALPILQVLAKDP 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +   L A   +   V IGGV +  + R+L    H
Sbjct: 105 ------YGVFALVLTPTRELAAQICEQFRALGAGMRLKELVIIGGVDMQHQARELARRPH 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHL---KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VV TPGRL   +   G   + L   + +VLDEAD +LD  F DD+ ++     + R+ L
Sbjct: 159 VVVATPGRLRGLLDADGGLSAGLSRTRFLVLDEADRVLDPTFEDDLRYVRFCLRQDRQTL 218

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++ ++  L K   +DA         R    +    + +    ++  +  +L    
Sbjct: 219 LFSATMTRSLIALQKASLQDAHVFQAYEGLRTADRLREEYLFLPAKVKEVYLHYLLTVVV 278

Query: 244 A----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++AI+FCST       + +L E      AL    SQ+ R +AL   +  +  + +
Sbjct: 279 PARKVRSAIIFCSTCRGCHLLSVLLEELGLPAAALHSGKSQKARLSALARFKSEQVPLLL 338

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P ++LV++ +L     + +HR GRT RAGR G S+ ++ Q   +    +
Sbjct: 339 ATDVASRGLDIPTVDLVVNYDLPVLARDYVHRVGRTARAGRSGWSLSLVTQYDVQLVHAI 398

Query: 360 FREANVSVVWEPAPSVEAIR 379
                  +        E ++
Sbjct: 399 EELIGHKLDEHKLDEDEVLK 418


>gi|297826827|ref|XP_002881296.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327135|gb|EFH57555.1| hypothetical protein ARALYDRAFT_902447 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 731

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 121/394 (30%), Positives = 196/394 (49%), Gaps = 24/394 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L +
Sbjct: 310 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 369

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  L      +    P A+ +APTRELA Q+  E        G  V   +GG S+  
Sbjct: 370 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 429

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------- 169
           +   +  G  IV+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +       
Sbjct: 430 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAM 489

Query: 170 ----------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                     E  LD     R   MFSAT+ P +  LA+ Y ++ V V I +  +    I
Sbjct: 490 PSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLI 549

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               +++  S++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  S
Sbjct: 550 SQHVIMMKESEKFFRLQKLLDELGDKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 609

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  +L+  R  R  V +ATDV  RGID+PD+  VI+ ++  + E   HR GRTGRAG
Sbjct: 610 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 669

Query: 340 RKGMSVFVIPQNMQ---RRAERLFREANVSVVWE 370
           + G++   +  +        +++  ++N +V  E
Sbjct: 670 KSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPE 703


>gi|229102742|ref|ZP_04233441.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
 gi|229115630|ref|ZP_04245035.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228667772|gb|EEL23209.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus Rock1-3]
 gi|228680674|gb|EEL34852.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus
           Rock3-28]
          Length = 389

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|124001007|ref|XP_001276924.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121918910|gb|EAY23676.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 491

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 119/421 (28%), Positives = 214/421 (50%), Gaps = 12/421 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P  +   E L    +  + ++QE  +   L   D+L +A+TGSGKT+AF +   
Sbjct: 27  KEFSTLPLHEKTLEVLKRLPFNTMYAIQEQAIPILLSGGDILAAAKTGSGKTLAFLIPAI 86

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +N   +     + L +APTRELA Q+      L   T V      GG     E  
Sbjct: 87  DLLFRKNA--TKKDGTIVLIVAPTRELADQIFDVATLLLKDTEVSFGAAYGGKEKKNETT 144

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L++G +++V TPGRLCDHI   K  ++ +LK +++DEAD +L+ G++D +  I++  P 
Sbjct: 145 LLKSGINLLVATPGRLCDHILTTKDWSLENLKMLIIDEADRILEDGYKDQLHAIVEGIPS 204

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---DIDYRAVLVALSDRDNAI 235
           +R+  +FSAT +  ++ +A+   K         +N       ++    +++  S R   +
Sbjct: 205 ERQTALFSATQTKDVSKIAEVSFKHTPVYVGVDDNADEVTAANLTQDCMIITPSKRLMLL 264

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + IL+ +  K  IVF +TRA V    + L +     +AL G+ +QQ+R  +L+  R+ ++
Sbjct: 265 ITILKRNDKKKVIVFFNTRAGVKFHHQYLKKMNINTIALHGDQTQQKRLTSLEEFRNKKS 324

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + + TDVAARG+D+  +  VI  +   + +  +HR GR  RAG+ G ++ ++  N ++ 
Sbjct: 325 GIMLCTDVAARGLDIEGVHWVIQYDPPQSIKEYIHRVGRCARAGKSGKALIILLPNEKKF 384

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
            +RL +E  V +     P  + +   D ++ L   +   ++Q   K+ +   L  +D   
Sbjct: 385 VDRL-QENKVPIKVCKFPENKIL---DLRKTLAALMEDKNLQKRAKEALKAFLMFYDSHT 440

Query: 416 I 416
           +
Sbjct: 441 M 441


>gi|295702531|ref|YP_003595606.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294800190|gb|ADF37256.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
          Length = 401

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 201/386 (52%), Gaps = 8/386 (2%)

Query: 1   MKIF-ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  F E +   + EA  + G+   T++Q   ++  L  KDV+  + TG+GKT+A+ L + 
Sbjct: 1   MSQFIETLQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              A+ +A + EL +Q+  E++     +G+  A  IGG ++ R+  
Sbjct: 61  HRIQPGPSHI------QAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLE 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+VGTPGRL + I+ K L +  +K +V+DEAD++        ++ I+  +   
Sbjct: 115 KLKKRPNIIVGTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHVQTVQQIVKMALSD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L+FSAT+S    +LAK+     + + +  +    S +++  +     D+ + +  ++
Sbjct: 175 RQILVFSATVSERTKSLAKDMMNHPLEIEVGRDELPASKVEHVYIKSEARDKVDVLRKLV 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K A+ F     ++  F + L     +  +L  E  +++R+  ++  R G   V +
Sbjct: 235 RQEQMK-ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLL 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  VIH ++  + +  +HRSGRTGR+G +G  + ++ +  +R  +++
Sbjct: 294 ATDVAARGLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQI 353

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
            RE  +S+V +     E + E   ++
Sbjct: 354 ARELQLSLVKKELYMGEIVDEGTKEQ 379


>gi|330470231|ref|YP_004407974.1| dead/deah box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328813202|gb|AEB47374.1| dead/deah box helicase domain protein [Verrucosispora maris
           AB-18-032]
          Length = 563

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 119/359 (33%), Positives = 187/359 (52%), Gaps = 3/359 (0%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           EAL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L   + A  +  S  
Sbjct: 38  EALAAAGITRAFAIQEYALPIALRGADLIGQAPTGTGKTLGFGVPLLERVFAPGEG-SGD 96

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
             P AL + PTREL +QV +++       GV V    GGV+   +   L+ G  I+VGTP
Sbjct: 97  GLPQALVVVPTRELGIQVAKDIAAAGRTRGVRVLPIYGGVAYEPQVEALRKGVEILVGTP 156

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GRL D  + K L ++ ++A+VLDEAD MLDLGF DD+E IL   P+ R+ ++FSAT+   
Sbjct: 157 GRLLDLAKQKHLRLNGIRALVLDEADRMLDLGFLDDVERILAMLPEDRQTMLFSATMPDP 216

Query: 193 ITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           I TL++ + +  + ++    +E       +         ++   +  IL+       ++F
Sbjct: 217 IVTLSRRFLRHPITIHAGHTAETGPSPQTEQLVYRTHSMNKVEIVARILQAESRGLTMIF 276

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+ +  R  + L    F V A+ G+L Q  R  AL+  R G+    +ATDVAARGID+
Sbjct: 277 TRTKRAADRVAEDLDFRGFAVAAVHGDLGQGARERALRAFRAGKIDTLVATDVAARGIDV 336

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
             +  VI+ +   + +   HR GRTGRAG  G++V  +  +   R   + +   + +  
Sbjct: 337 TGVTHVINYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRIIDKTLGLDMPE 395


>gi|167515852|ref|XP_001742267.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778891|gb|EDQ92505.1| predicted protein [Monosiga brevicollis MX1]
          Length = 591

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 120/405 (29%), Positives = 187/405 (46%), Gaps = 17/405 (4%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +GY  L  +Q     P L  KD+L  A+TG GKT++F L +   LL E  R     AP A
Sbjct: 17  KGYTKLFEIQSRTFTPILEGKDILGKARTGEGKTLSFALPIIELLLKEG-RNGRGRAPRA 75

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L +APTRELA QVG+E   +            GG     +   ++ G  +++GTPGRL D
Sbjct: 76  LCMAPTRELAHQVGKEFADIGPSLASTC--VYGGAPYMPQESAIRRGLDVIIGTPGRLKD 133

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L ++ +K ++LDEAD ML+ GF + I+ I   +  +          S  +    
Sbjct: 134 HLDKGTLKLTDIKYLILDEADRMLEQGFVEAIDEIQKMTIAQSGGKPQMILFSATMPDFI 193

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--------IVNILRYHGAKNAIV 249
            +  K+ +  ++  +    S       +  L+ +            V  +        I+
Sbjct: 194 LSTVKNYMPNHVTVDTVGSSRNRTSKGVDHLAIKCPWTERRAVIADVVQMYSGAHGRTII 253

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  T+   +             V   G++ Q++R  +LQ  RDG+ R  +ATDVAARG+D
Sbjct: 254 FTQTKKDANELALETDLRQEVQVLH-GDIPQKQREMSLQAFRDGKVRCLVATDVAARGLD 312

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +P+++LV+  E   + E+ +HRSGRTGRAGR G  +     N +     + R A +S   
Sbjct: 313 IPEVDLVVQCEPPKDVESYIHRSGRTGRAGRTGTCICFYKPNQEDAMRYVERRAGISFRR 372

Query: 370 EPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             AP  E + +   RDA R L+     DS+    K     L+ + 
Sbjct: 373 IGAPQPEDVIKASARDAFRSLE--AINDSVLAHFKDAARELIEER 415


>gi|91077478|ref|XP_968425.1| PREDICTED: similar to CG5800 CG5800-PA [Tribolium castaneum]
 gi|270002829|gb|EEZ99276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Tribolium castaneum]
          Length = 770

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 102/406 (25%), Positives = 183/406 (45%), Gaps = 13/406 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++P      + L E GY   T +Q   +   L  KD+L +AQTGSGKT+AF + +
Sbjct: 50  INSFDDLPLSPKTLKGLKECGYTKPTDIQRETIKLGLTGKDILGAAQTGSGKTLAFLIPI 109

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   ++      AL I PTRELA Q+  EL  +         + IGG  +  ER
Sbjct: 110 LERLYCKQ--WTRLDGLGALVITPTRELAYQIFEELRRVGEHHEFSAGLIIGGKDLKFER 167

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++      L         +  +++ +VLDEAD  LD+GF   +  I+ + P 
Sbjct: 168 NRMDQCNIVIGTPGRILQHMDENPLFDCVNMEILVLDEADRCLDMGFEQTMNAIVANLPA 227

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++             V V+  SE      +    V+  L D+ + + 
Sbjct: 228 KRQTLLFSATQTKSVRDLARLSLKNPAYVSVHEHSEYSTPKGLQQSYVVCELKDKVSILW 287

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + ++ H  + +I+F ++   V    ++       V  ++   +  +       +      
Sbjct: 288 SFIKNHLKQKSIIFLASCKEVKYVYEIFCRLRPGVSLMALYGTLHQLRRMDIYENFCKKT 347

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + V  ATD+AARG+D P++  V+ A+   +    +HR GRT R  R G S+ ++  +  +
Sbjct: 348 SAVLFATDIAARGLDFPEVHWVVQADCPEDAATYIHRVGRTARFFRGGESLLLLLPSELK 407

Query: 355 RAERLFREANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQ 397
             + L +E  + +      P      +R+ +A  + +DP   D+ Q
Sbjct: 408 MLDNL-KEKKIPIEKIDINPLKLNNPVRKMEAF-LARDPDLKDTAQ 451


>gi|328709089|ref|XP_003243867.1| PREDICTED: probable ATP-dependent RNA helicase pitchoune-like
           [Acyrthosiphon pisum]
          Length = 511

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 113/469 (24%), Positives = 213/469 (45%), Gaps = 16/469 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   + +++ G+  +T +Q   + P L  +D++ +A+TGSGKT+AF +     +   
Sbjct: 29  HVCENTLKGIADMGFTVMTEIQAKTIPPLLEGRDLVGAAKTGSGKTLAFLIPAVELIY-- 86

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +F P +    + I+PTREL++Q    L+ L         + +GG +   E   L  G 
Sbjct: 87  KLKFMPRNGTGCIIISPTRELSMQTYGVLKELMKHHHHTYGLMMGGANRQTEATKLSKGI 146

Query: 126 HIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +IVV TPGRL DH          +L+ +++DEAD +LD+GF ++I+ I++  PK+R+ +M
Sbjct: 147 NIVVATPGRLLDHLQNSPDFLYKNLQCLIIDEADRILDIGFEEEIKQIINLLPKRRQTMM 206

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRY 241
           FSAT +     L     K         +++  + +D      V+     R   +   L+ 
Sbjct: 207 FSATKTHKTDALTTFALKKEPIYIGVDDSKVEATVDGLEQGYVICPSEKRFLLLFTFLKK 266

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  +VF S+  +V  F ++L      V+ + G+  Q+ R+       +    + + T
Sbjct: 267 NRKKKVMVFFSSCLAVKYFHELLNYIDLPVMCIHGKQKQERRTTTFFQFCNAETGILLCT 326

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLF 360
           DVAARG+D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++        + L 
Sbjct: 327 DVAARGLDIPLVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFLQYL- 385

Query: 361 REANVSVVWEPAP--SVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKIA 417
           ++A V +         +  I +   ++++    FL  S +   K  V    + H  +   
Sbjct: 386 KKAKVPLNEFDFSWNKISDI-QLQLEKLVAKNYFLHISAKEAFKSYVRAYDSHHLKQIFD 444

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            G L I +          P   ++ +          + GGG    F   
Sbjct: 445 VGTLDITKVAASFGFTTPPAVELNAKAVRPRK----RHGGGGLGKFNNM 489


>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae]
          Length = 856

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 198/417 (47%), Gaps = 10/417 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + + 
Sbjct: 338 KSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL 397

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 398 ERLLFRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 454

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 455 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 514

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + S+     ++              R   +
Sbjct: 515 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYL 574

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++ +       IVF   +    R          +   L G +SQ++R  +++  R+G+ 
Sbjct: 575 LHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKV 634

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+AARG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 635 SFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 694

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +   + +        +  V+ A+ +R AQ+       ++++  +EK    +  A+ 
Sbjct: 695 VKAAVKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEM 751


>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
 gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
           corporis]
          Length = 723

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 3/359 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + + +RGY   T +Q   +   L+ +DV+  A+TGSGKT  F L +   L+ +  + 
Sbjct: 37  PVLKGIQKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPK- 95

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                  AL ++PTRELA+Q  + ++ L   T +     +GG S+ ++   +     I+V
Sbjct: 96  -SRLGVRALILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIV 154

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + ++ ILD     R+ ++FSAT+
Sbjct: 155 ATPGRFLHICVEMELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRLGVSRQTVLFSATL 214

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG-AKNAI 248
              +   AK    + V + +  E +    +D     V   ++  A++ +L         +
Sbjct: 215 PKLLVDFAKAGLVNPVLLRLDVETKIPEMLDLVYFSVKHDEKLAALLCLLNLLPKNTQTL 274

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +F +T+  V    K+L +       +  +L    R       ++    V I TDVAARG+
Sbjct: 275 IFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNKVCSVLIVTDVAARGV 334

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           D+P L+ VI+    + P+  +HR GR  RAGR G +  ++          L       +
Sbjct: 335 DIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEFPYIIDLHLFLGKKI 393


>gi|332016384|gb|EGI57297.1| Putative ATP-dependent RNA helicase DDX49 [Acromyrmex echinatior]
          Length = 461

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 116/433 (26%), Positives = 201/433 (46%), Gaps = 25/433 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++     +       G    T +Q+  +   L  +D +  A+TGSGKT+AF L +
Sbjct: 10  IKHFSDLKLNSWLLAQCESMGLKKPTPIQQNCIPRILMGEDCIGCAKTGSGKTLAFVLPI 69

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + PTRELA Q+  +   +     +   V +GG+ +  + 
Sbjct: 70  LQKLCEDP------YGIFALVLTPTRELAFQIADQFTAIGKAINLKKCVIVGGMDMMVQG 123

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L    HIVV TPGRL DH+      ++  +K +VLDEAD +L   F   ++ I  + P
Sbjct: 124 LELSKRPHIVVATPGRLADHLDSCDTFSLQKIKFLVLDEADRLLGGHFDGQLKTIFAALP 183

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAI 235
           K++++L FSAT++  +  + +    +        +    +    D R VL      D+ +
Sbjct: 184 KQKQVLFFSATMTDTLDKVKQIASAEVFTWQEEDDFGIATVKELDQRYVLCPKDVLDSYL 243

Query: 236 VNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V +++     N     ++F  T       + +L    F  VAL   + Q+ER  AL   +
Sbjct: 244 VEVIKTFRTTNENGSIMIFTDTCKYCQLLSMMLNNVGFTNVALHAMIKQKERLAALNKFK 303

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
               ++ IATDVAARG+D+P ++L+I+  + + P+  +HR GRT RAG+ GMS+ +I  N
Sbjct: 304 SNHVQILIATDVAARGLDIPTVQLIINHVIPNVPKEYIHRVGRTARAGKNGMSISLITPN 363

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVL 407
             +    +     + +        + I    +   A+R  +  + LD     EKKM++  
Sbjct: 364 DIKLLHAIENVIGIKLTEYKIDDKKIITILTQVSVAKRTAE--IKLDETDFYEKKMINKQ 421

Query: 408 ----LAKHDPEKI 416
               L + D  ++
Sbjct: 422 KKLILEELDGSQL 434


>gi|307109393|gb|EFN57631.1| hypothetical protein CHLNCDRAFT_20835 [Chlorella variabilis]
          Length = 608

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 120/450 (26%), Positives = 192/450 (42%), Gaps = 14/450 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---L 63
           + + +   L  +G   L  +Q   L P L  +D++  A+TG GKT+AF L +   L    
Sbjct: 10  LSEPVKSLLRAKGIEALFDIQAQCLPPLLEGQDLVGRARTGCGKTLAFVLPIVERLAGGQ 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               + +   AP  + +APTRELA QV  + E+      +      GG     +   L+ 
Sbjct: 70  GAGGKRAFGRAPSVVVLAPTRELAKQVAADFEYYAKAFSLTTVCLYGGTQYGPQEGMLRR 129

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD------SSP 177
           G  +V+GTPGR+ DH+    L ++ L+  VLDE DEML++GF +D+E IL+      +  
Sbjct: 130 GVDVVIGTPGRVKDHLERGTLKLNQLRFRVLDECDEMLNMGFVEDVEKILNAGVDAATVQ 189

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                      +        K        V         S                    
Sbjct: 190 TLLFSATLPHWVKDITKRFLKPGFTTVDLVGSQKMKASTSVRHLLLPCHWSQRSQIVPDL 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y      I+F  T+   +  +  LAE      AL G++ Q +R   L   R G+  V
Sbjct: 250 VKCYGVCGRTIIFTETKNDANELSGTLAESFGAR-ALHGDIPQGQREVTLAGFRSGKFSV 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  +ELVI  E   +PE  +HRSGRTGRAG+ G+ + ++ +  +    
Sbjct: 309 LVATDVAARGLDISGVELVIQLEPPKDPETYIHRSGRTGRAGQTGICLTLVDRRKEGLIP 368

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHDPEKI 416
            +  +A +      AP    + +   +R L+    +D S+    +     LL      + 
Sbjct: 369 YIQTKAGLKFERVGAPQPSDMAQLAGERALEAVQAVDVSVLPFFRAAAQKLLESVGSPED 428

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
           A        A +    E+ P SL++  + F
Sbjct: 429 AVAL---ALAKITGHVEMRPRSLLTAHEDF 455


>gi|195053518|ref|XP_001993673.1| GH20986 [Drosophila grimshawi]
 gi|193895543|gb|EDV94409.1| GH20986 [Drosophila grimshawi]
          Length = 689

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 214/467 (45%), Gaps = 11/467 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A++E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 204 VSEATLRAIAEMGFSEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 261

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 262 LHFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGRGIN 321

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 322 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 381

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+ + E      ++   ++     R   +   L+ +
Sbjct: 382 SATQTDRIDALSKLALKKEPIYVGVHDSQETATVDGLEQGYIVCPSEKRLLVLFTFLKKN 441

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 442 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 501

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +P   +HR GRT R  G  G ++ ++         R  +
Sbjct: 502 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLMLRPEELGFL-RYLK 560

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            A V +         +  I +   ++++    FL+    +  K        H  ++I   
Sbjct: 561 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNV 619

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                +A   +   + P  +       + +    +VGGG    +K  
Sbjct: 620 NTLDLQAVSKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGFGYYKQM 666


>gi|310643767|ref|YP_003948525.1| dead/deah box helicase domain protein [Paenibacillus polymyxa SC2]
 gi|309248717|gb|ADO58284.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
          Length = 463

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 133/491 (27%), Positives = 227/491 (46%), Gaps = 44/491 (8%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M + FE +   Q + + L+E      + VQ   +   ++ K VL  +QTG+GKT+A+ L 
Sbjct: 1   MTLNFEALGVEQDLLDKLTEHEITQPSPVQAEAIPEIMKGKHVLARSQTGTGKTLAYLLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  +        A   L +AP++ELA+Q+ RE +      G+ V   IGG ++ R+
Sbjct: 61  LLQAIDPQK------KATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++   +VVGTPGR+ + I  K L + ++  +V+DE D+M  LG   D+  IL S+ 
Sbjct: 115 IEKLKDHPQLVVGTPGRVRELIASKKLKMHNITTIVIDEVDQMFQLGGAGDVTHILGSAQ 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+++  SAT++  I +LA+    D V + I  + +  S +++   +    D+ + +  
Sbjct: 175 RDRQLVFLSATLNNEIQSLAQREMPDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R+   + A+VF +T  ++      L        +L G+  +  RSN L   R+ + +V
Sbjct: 235 LVRHFNPRKALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+  LE+VIH + +++ +  +HR+GRTGR GRKG+ V V+ +       
Sbjct: 295 LVASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVVSVVTERETFIMR 354

Query: 358 RLFREANVSVVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +  RE  + +          +  R  DA+R    P    SI                   
Sbjct: 355 KFSRELGIDIAERALYGGRVVVPRPADAKRAPVRPSETRSIS------------------ 396

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR--DDSRAFKVGGGSRDNFKGSSWFSLSV 473
                      G       TPV   +GR      + S   K  G +      +       
Sbjct: 397 ----------NGTVTENRKTPVRTEAGRPGRNSVNGSAPGKSKGAALSKAGKAQRERD-- 444

Query: 474 GSKQKAEARWL 484
             K K   RWL
Sbjct: 445 -RKNKGAPRWL 454


>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
           formation [Pichia pastoris GS115]
 gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Pichia pastoris CBS 7435]
          Length = 784

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 110/387 (28%), Positives = 193/387 (49%), Gaps = 9/387 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ     + +  Y   T +Q   L   +  KD++  A+TGSGKT+AF L +   ++++ 
Sbjct: 222 LPQQFMSVIEDLKYEAPTPIQSEALPNLMSGKDLIGIAKTGSGKTLAFLLPMFRQIISQP 281

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D  S    P+ + + PTRELA+Q+ +E +       +      GG S+ ++  D++   H
Sbjct: 282 DPES-GEGPIGVILTPTRELALQIFKECKPFMKSLNLKGICVYGGASISQQISDIKKRVH 340

Query: 127 IVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             V TPGRL D +      +++L     +VLDEAD M D+GF   +  I+ ++   R+ L
Sbjct: 341 FAVCTPGRLIDLLTANSGRVTNLSRTSYLVLDEADRMFDMGFEPQVMKIIPNTRPDRQTL 400

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT  P +  LAK    + + V +  ++     I  +  ++   +R + ++ +L    
Sbjct: 401 VFSATFPPKMEALAKKVLNNPLEVIVGEKSVVADTITQKVFVIDPQERFSKLLELLGTFK 460

Query: 244 AKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +K+     +VF   + S       L +  +   +L G   Q +R   +Q  + G + + +
Sbjct: 461 SKDPTGKVLVFVERQDSADVLLTNLLKRGYNAQSLHGGKEQMDRDFIIQDFKTGNSDILV 520

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT VAARG+D+  L LVI+ +  ++ E+ +HR GRTGRAG  G +V  +     R A  +
Sbjct: 521 ATSVAARGLDVKRLNLVINYDSPNHMEDYVHRVGRTGRAGSTGEAVTFLTAKDYRAAYDV 580

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRI 386
            R   VS    P  +V+A+     +++
Sbjct: 581 SRALKVSKQLVPD-NVQAVANVFIEQL 606


>gi|328952772|ref|YP_004370106.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
 gi|328453096|gb|AEB08925.1| DEAD/DEAH box helicase domain protein [Desulfobacca acetoxidans DSM
           11109]
          Length = 415

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 110/367 (29%), Positives = 180/367 (49%), Gaps = 7/367 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
             IF +    +   +    +   T +Q   +   ++  DV+  A TG+GKT AF L +  
Sbjct: 3   FSIF-DFHHQVTAGVVAARFRTPTPIQAKAIPLIMQGHDVVGLAHTGTGKTAAFVLPILH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    R        AL IAPTRELA Q+   +  L ++TG+      GGV  + +   
Sbjct: 62  RLMQGERR-----QVRALVIAPTRELAQQIHEAIGTLGSRTGLRSVTIYGGVGFNPQVDK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV  PGRL DH+    +++S+L+ +VLDE+D M D+GF  DI  I+   P +R
Sbjct: 117 LKRGAEIVVACPGRLLDHMNQGTIDLSNLEVLVLDESDRMFDMGFLPDIRKIIKHVPTER 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I  LA    K  V V +        ++ +R   +    +   ++ +LR
Sbjct: 177 QTLLFSATMPDDILHLAHEVLKAPVTVQVN-NIGPAINVSHRLYPIKQHLKTALLLELLR 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   ++ ++F  T+    R  + L +  ++  +L G LSQ  R   +   R+G  ++ +A
Sbjct: 236 HTNTESVLIFTRTKHRAKRLGEQLGKAGYRATSLQGNLSQGRRQAVMNGFRNGTFQILVA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+ ++    +   HR GRTGR  + G +   I    +    R+ 
Sbjct: 296 TDIAARGIDVTQISHVINYDMPDTIDAYTHRIGRTGRNTKTGDAFTFITSEDEDMVRRIE 355

Query: 361 REANVSV 367
                 V
Sbjct: 356 NVLRTRV 362


>gi|311278491|ref|YP_003940722.1| DEAD/DEAH box helicase domain-containing protein [Enterobacter
           cloacae SCF1]
 gi|308747686|gb|ADO47438.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
          Length = 444

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 113/394 (28%), Positives = 186/394 (47%), Gaps = 6/394 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +   + + +AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L  
Sbjct: 3   VTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL    + S    P  L + PTRELA+QV      L   T + +A   GGV+     
Sbjct: 63  LQHLLDFPRKKS--GPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   IVV T GRL  +I+ +  +   ++ ++LDEAD MLDLGF  DIE I   +  
Sbjct: 121 EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDLGFAQDIEHISGETRW 180

Query: 179 KRRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +++ ++FSAT           +  +         S   +     +         +   + 
Sbjct: 181 RKQTMLFSATLEGDAIKDFAERLLEDPVEVSATPSTRERKKIHQWYYRADNFEHKLELLK 240

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+      +IVF   R  V    ++L         L GE++Q +R   ++ + DGR  
Sbjct: 241 HLLKQDDVTRSIVFVRKRERVHEMAELLRAAGINNCYLEGEMAQAKRVEGIKRLTDGRVN 300

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVAARGID+PD+  V + ++  + +  LHR GRTGRAGRKG ++ ++  +     
Sbjct: 301 VLIATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTGRAGRKGTAISLVEAHDHLLL 360

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
            ++ R     +       +  +    ++++   P
Sbjct: 361 MKIGRYIEEPLKPRVIDELRPVTRPPSEKMTGKP 394


>gi|168059277|ref|XP_001781630.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666944|gb|EDQ53586.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1072

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 179/386 (46%), Gaps = 39/386 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + + G+     +Q   L   +  +D +  A+TGSGKT+AF L +   ++ + 
Sbjct: 485 LNSKVLDVIKKSGFEKPMPIQTQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIM-DQ 543

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+ L +APTREL  Q+  ++       G+      GG  V ++  DL+ G  
Sbjct: 544 PPLQQGDGPIGLIMAPTRELVQQIYNDIRKFSKVVGLTCVPVYGGSGVAQQISDLKRGTE 603

Query: 127 IVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVV TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ ++   R+ +
Sbjct: 604 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTV 663

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    +  LA+      V + I   +  +SDI     +   S+R   ++ +L    
Sbjct: 664 LFSATFPRQVEVLARKVLTKPVEIQIGGRSVVNSDITQTVEVRPESERFLRLLELLGEWY 723

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+                               QE+ + +   +     + IAT +
Sbjct: 724 EKGKILVFVH--------------------------SQEKESTITDFKTSVCNLMIATSI 757

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +LELV++ ++ ++ E+ +HR GRTGRAGRKG +V  I    +R A  L +  
Sbjct: 758 AARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISTEEERYAPDLVKAL 817

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQD 389
            +S   +P P        D +++  D
Sbjct: 818 ELS--EQPIP-------EDLKKLADD 834


>gi|326934515|ref|XP_003213334.1| PREDICTED: probable ATP-dependent RNA helicase DDX49-like
           [Meleagris gallopavo]
          Length = 482

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 133/456 (29%), Positives = 218/456 (47%), Gaps = 29/456 (6%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P ++ +A  + G    T VQ + + P L+ +D L  A+TGSGKT AF L 
Sbjct: 1   MAAFRELGLAPWLVEQA-RQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L  +            L + PTRELA Q+  +   L    G+   V +GG+ +  +
Sbjct: 60  VLQVLSEDP------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGF---RDDIEFIL 173
             +L    H+V+ TPGRL DH       ++  LK +VLDEAD +L+ G      D+E IL
Sbjct: 114 ALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVIL 173

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           ++ P +R+ L+FSAT++  +  L             ASE R   ++D R +LV  + +D 
Sbjct: 174 EAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDA 233

Query: 234 AIVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V+        H   + I+F  T         +L +  F  VAL   + Q++R  AL  
Sbjct: 234 YLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAK 293

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ 
Sbjct: 294 FKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVT 353

Query: 350 QNMQRRAERLFREANVSVVW---EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD- 405
           Q        +  E  + +     E    ++ +   +  R  +  + L+ +  DEKK ++ 
Sbjct: 354 QYDIHLVHAIEEEIKLKLQEFSVEEKLVLDILNHVNVTR-RECEIELEYMDFDEKKEINK 412

Query: 406 ---VLLAKHDP---EKIAAGFLRIHRAGLCAPEEIT 435
              ++L   DP   EK  A   +I +      E++ 
Sbjct: 413 RKQMILEGKDPDLEEKRKAELAKIKKKNNKFREKVQ 448


>gi|241148960|ref|XP_002405949.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
 gi|215493782|gb|EEC03423.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
          Length = 460

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 25/368 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P  I + +  + Y   T +Q       L  K+++  AQTGSGKT+ + L     +  +
Sbjct: 96  NFPDYIMKGIEAQKYTTPTCIQAQGWPIALSGKNLVGIAQTGSGKTLGYILPAIIHINHQ 155

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+AL +APTRELA Q+ +        + V      GG     + RD++ G+
Sbjct: 156 -PYLQRGDGPIALVLAPTRELAQQIQQVSSEFGKASRVRSTCVFGGAPKGPQLRDIERGS 214

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I + TPGRL D +    +N+     +                      +          
Sbjct: 215 EICIATPGRLIDFLEAGKVNLRRCTYL------------------PDCQTLMWSATWPKE 256

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
             +++             A+++       Q  D+           + +  +   + +   
Sbjct: 257 VRSLAEEFLRDYIQINIGALQLCANHRILQIIDVCQETEKEDKLMKLHQEILNEKENK-- 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF  T+  V   T+ +  + +  + + G+ +QQER   L   R GRA + +ATDVAA
Sbjct: 315 -TIVFAETKRKVDDLTRKMRRYGWPAICIHGDKTQQERDWVLNEFRSGRAPILVATDVAA 373

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FRE 362
           RG+D+ D+  VI+ +  +  E+ +HR GRT R+ + G +      N  R+A+ L    +E
Sbjct: 374 RGLDVDDVRFVINYDYPNCSEDYIHRIGRTARSNKTGTAYTFFTPNNSRQAKELISVLQE 433

Query: 363 ANVSVVWE 370
           AN  V  +
Sbjct: 434 ANQVVNPK 441


>gi|319644991|ref|ZP_07999224.1| YqfR protein [Bacillus sp. BT1B_CT2]
 gi|317392800|gb|EFV73594.1| YqfR protein [Bacillus sp. BT1B_CT2]
          Length = 439

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 195/397 (49%), Gaps = 19/397 (4%)

Query: 1   MK--IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE  ++   I EA+   G+   T +Q+ ++   L+ +  +  +QTG+GKT A+ L
Sbjct: 1   MKQTKFEMYDLKPFIIEAVHHLGFYEPTDIQKRLIPAALKGESAIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L S +  E +          +  APTRELA Q+ +E+  +    G   A+         
Sbjct: 61  PLLSRIDPEKEFV------QVVITAPTRELANQIHQEVLKITKFLGPDEAIRSKCFIGGT 114

Query: 117 ERRDLQN----GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +++   +      H+VVGTPGR+ D IR + L++    + V+DEAD MLD+GF +D++FI
Sbjct: 115 DKQKSIDKLKTQPHLVVGTPGRIADLIREQALDVHKAGSFVIDEADLMLDMGFLEDVDFI 174

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               P+  +ML+FSATI   +    K Y  +    ++  ++     I++  +     D++
Sbjct: 175 GSHMPEGLQMLVFSATIPEKLKPFLKKYMANPRYAHVEPKHITAEKIEHVLIPSRHRDKN 234

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ ++ +     AIVF +T+ +       L +   +V  L G L+ +ER   ++ + D
Sbjct: 235 ELLLEVMTHLNPYLAIVFANTKTTADEIAAYLTDKGMKVGLLHGGLTPRERKKVMKQIGD 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
                 IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++     + 
Sbjct: 295 LEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGTSGTAMTFYDTSD 354

Query: 353 QRRAERLFRE----ANVSVVWEPAPSVEAIRERDAQR 385
           +    +L +      N+ +       ++  R+R   R
Sbjct: 355 EDALVKLEQMGIVFENMRIEKGEWKKIDD-RKRRQNR 390


>gi|311032733|ref|ZP_07710823.1| ATP-dependent RNA helicase [Bacillus sp. m3-13]
          Length = 449

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 177/368 (48%), Gaps = 7/368 (1%)

Query: 2   KIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
             F N +   I +   +  +   T VQE  +   L  KDVLV + TG+GKT+A+ L +  
Sbjct: 3   TTFINTLQPFIQQIWEKSEFAAATPVQEQAIPVILDGKDVLVESPTGTGKTLAYLLPIIE 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +            P AL +AP++ELA+Q+  +++     + +  A  IGG +V R+   
Sbjct: 63  RIDLSKQ------HPQALIVAPSKELAMQIFEQIQKWTEGSEISGASFIGGANVKRQLEK 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   HI+VGTPGRL + I+ K + +  +K +V+DEAD++     +  IE I+ SS ++ 
Sbjct: 117 LKKKPHILVGTPGRLQELIQMKKIKMHEVKTIVMDEADQLFVPEHKKTIENIIKSSMQQE 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R L+  +      T            V   ++             V        ++  L 
Sbjct: 177 RQLLLFSATLKEETEKQAVDLLKEPLVIKVTKEDLPPARVEHLYAVVDQRDKANVLANLL 236

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+ F     +++  T+ L      V  L  E S+QER NA++  R     V +A
Sbjct: 237 REPGIKALAFVRDIGNLAVLTEKLLYKQLNVGFLHSESSKQERENAMKNFRKDEYPVLLA 296

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ +L  VIH +L    E+ +HRSGRTGR G +G  + ++ +  +RR ++  
Sbjct: 297 TDVAARGLDIKELSHVIHYDLPEEVESYVHRSGRTGRQGAEGTVISIVSEREERRLKQFA 356

Query: 361 REANVSVV 368
           RE  + + 
Sbjct: 357 RELGLKLE 364


>gi|255070425|ref|XP_002507294.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
 gi|226522569|gb|ACO68552.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
          Length = 484

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 179/385 (46%), Gaps = 13/385 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + E ++  G    T VQ   +   L  +DV+  AQTG+GKT AF L +   L  E 
Sbjct: 75  LNSWLCENITSMGIATATPVQRGCIPAILAGRDVIGVAQTGTGKTAAFALPILQILGREP 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA Q+  +     A   +      GG ++  + + L    H
Sbjct: 135 ------YGIFCLCLTPTRELASQISEQFIAFSAGMTLRCETVFGGENIRTQAKALMLRPH 188

Query: 127 IVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           I V TPGRL DH            +++ +VLDEAD +LD GF  +++ I+ + P   R  
Sbjct: 189 IAVATPGRLMDHFLHCSAVAKCFENVRCLVLDEADRLLDPGFEAELQAIMHNLPSANRQT 248

Query: 184 -MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---IL 239
            MFSATI+ +I+ + +     A+      + +           +A   ++  +V+     
Sbjct: 249 LMFSATITKSISAVQELALGKALLFEALKDTQLAGRCKEEYCFIAPRVKEVYLVHILKRA 308

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G ++ IVF  T        ++L+      VAL     Q  R  +L   + G  ++ I
Sbjct: 309 PTWGTRSMIVFAGTVRKCQMLKEILSVLGINCVALHAAKKQARRHASLSRFKSGEIQIMI 368

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RG+D+P +++V++ ++   P + +HR GRT RAGR G ++ ++ Q+      ++
Sbjct: 369 ATDIASRGLDIPTVDMVVNYDVPLIPRDYIHRIGRTARAGRVGRAITLVTQHDISLVHQI 428

Query: 360 FREANVSVVWEPAPSVEAIRERDAQ 384
            +     +V     S EAI +  AQ
Sbjct: 429 EQLTCRKLVELSKLSEEAILKDMAQ 453


>gi|259047162|ref|ZP_05737563.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
 gi|259036212|gb|EEW37467.1| DEAD/DEAH box family ATP-dependent RNA helicase [Granulicatella
           adiacens ATCC 49175]
          Length = 462

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 98/389 (25%), Positives = 180/389 (46%), Gaps = 11/389 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   + +AL++  +   T +QE I+   L+ + V+  +QTGSGK+ +F L L 
Sbjct: 29  MKFTDYALQPYLQKALADLKFTQPTPIQERIIPLLLKGESVIGQSQTGSGKSHSFLLPLI 88

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHR 116
           + +               +   P+RELA Q+      L   +   + +           +
Sbjct: 89  NKIDPSRQE------LQLVITVPSRELAEQLTAVAAQLITFSDTEILLEKCIGGTDKKRQ 142

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  Q   HIV+GTPGR+ D ++   L +  ++ +V+DEAD   DLGF + ++ I    
Sbjct: 143 VAKLTQTQPHIVIGTPGRIFDLMQENALFVQTVQMMVVDEADMTFDLGFLETVDEIASRM 202

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +M +FSATI   I    K Y  +   + I +       I  + ++    +  + + 
Sbjct: 203 PENLQMSVFSATIPDKIRPFLKKYLGNPKVIQIENTQLVSPTIKNQLLVTKAQNPMDVLR 262

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        ++F +T+      TK L  H F+V  + G++  +ER   ++ ++    +
Sbjct: 263 QLLVMGHPYLVLIFVNTKQKADEVTKDLRNHNFKVATIHGDIPSRERRRVMKQIQQMDYQ 322

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+ E+    E  +HR GRTGR G +G ++     + ++  
Sbjct: 323 FVVATDLAARGIDIEGVSHVINLEIPGELEFFIHRVGRTGRNGLEGTAITFYTPDQEQAI 382

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           + L  +  +S       + E +   D  R
Sbjct: 383 QTLEGK-GISFETVELKNGELVESYDRSR 410


>gi|156377720|ref|XP_001630794.1| predicted protein [Nematostella vectensis]
 gi|156217822|gb|EDO38731.1| predicted protein [Nematostella vectensis]
          Length = 495

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 210/418 (50%), Gaps = 9/418 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E++ +   + + + G+  +T +Q   + P L+ +D+L +A+TGSGKT+AF + +   L  
Sbjct: 6   EDVSEKTLQGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLY- 64

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F   +    + I+PTREL++Q       L         + +GGV+   E   LQ G
Sbjct: 65  -KLQFKTRNGTGVIIISPTRELSLQTYGVARDLLKHHNFTYGIIMGGVNRKAEAERLQKG 123

Query: 125 AHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            ++++ TPGRL DH++        +L+ +V+DEAD +L++GF +++  I+   P KR+ +
Sbjct: 124 VNLLIATPGRLLDHLQNTQGFLYKNLQCLVIDEADRILEIGFEEEMRQIIRILPSKRQTV 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILR 240
           +FSAT +  +  LAK   K +       ++++ S +   +   ++V    R   +   L+
Sbjct: 184 LFSATQTKNVEDLAKLSLKRSPLYVGVDDHKETSTVEGLEQGYIVVPSEKRFLVLFTFLK 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF S+  SV   +++L      V+ + G+  QQ+R+       + ++ + + 
Sbjct: 244 KNRSKKVMVFFSSCNSVKYHSELLNYIDLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLC 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P+++ ++  + + +P+  +HR GRT R    KG ++  +         R 
Sbjct: 304 TDVAARGLDIPEVDWIVQYDPADDPKEYIHRVGRTARGTEGKGHALLFLLPEELAFL-RY 362

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + A V +      S + +  +   +R+++   +L     D  K      A H  + I
Sbjct: 363 LKHAKVPLNEYDFSSSKILNIQSQLERLIEKNYYLHKSAKDAYKAYIQAYASHQHKSI 420


>gi|332993053|gb|AEF03108.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           sp. SN2]
          Length = 466

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 104/356 (29%), Positives = 179/356 (50%), Gaps = 5/356 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   L  R +  LT +QE  + P ++ KD++ S++TGSGKT+AF +   + ++++ 
Sbjct: 8   VHHKIITKLESRNFTELTEIQEKSMLPAIQGKDIIASSKTGSGKTLAFLIPAINRMMSQ- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL +APTRELA QV  E + +     +   + +GG + + + + L+   H
Sbjct: 67  -KALSRQDPRALILAPTRELAKQVFIEAKTMCTGLNLSCTLVVGGENYNDQVKALRRNPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGT GR+ DH++ K + ++ L+ ++ DEAD MLDLGF + +  I + +  ++R  M  
Sbjct: 126 IIVGTAGRVADHLKDKSIFLNGLELLIFDEADRMLDLGFSEQLNMINEFANHRKRQTMLF 185

Query: 187 ATISPAITTLAKNYQKDA---VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +    +I       +            S                +  +D  + + +    
Sbjct: 186 SATLDSIELNYMTARLTKAAVRVSVGDSTAHHGDIQQQCFFADNIEHKDALLHHEISNRT 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +TR    R T +L +   + +AL G+L Q +R+  +     G+  V + TDV
Sbjct: 246 YNQAIVFTATREDTDRLTTMLNKDKLEAIALRGDLPQNQRAAIMSEFARGQHSVLVTTDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+RG+DL  + LVI+ +L  N +  +HR GRTGRAG+KG +   +     +    L
Sbjct: 306 ASRGLDLSKVGLVINFDLPKNADEYIHRIGRTGRAGQKGEAASFVGPRDWKSFIAL 361


>gi|228997258|ref|ZP_04156882.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
 gi|229009233|ref|ZP_04166534.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228752045|gb|EEM01771.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock1-4]
 gi|228762532|gb|EEM11455.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus mycoides
           Rock3-17]
          Length = 389

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 189/370 (51%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKEFTEIQKQAIPMILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTDISGASLIGGADIKRQVERLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     + +  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMEAVFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++      +         S +++  ++    ++++ I  ++   
Sbjct: 175 VFFSATMTKDAEEVARDF-AVEPELVRIKRAEIKSLVEHTYIVCERREKNDYIRRVMHTG 233

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 234 NVK-AVAFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRQGKIEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++
Sbjct: 293 IAARGLDIDDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIQFKKQEM 362


>gi|295667643|ref|XP_002794371.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
 gi|226286477|gb|EEH42043.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb01]
          Length = 816

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 104/476 (21%), Positives = 208/476 (43%), Gaps = 11/476 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +   + LS   +  LTS+Q   L   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  VEAFSDLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + + ++ +VLDEAD ++D+GF++ ++ I++  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPK 225

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+ A+ +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLHQNYIVTPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       +VF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  + P    
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLDPTEEA 405

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +RL  R+  +  +       ++I+ +      +DP      Q      V  +  + D
Sbjct: 406 AMLKRLEQRKIPIEKINVRTKKQQSIKNQLQNMCFKDPALKYLGQKAFISYVKSIHVQKD 465

Query: 413 PEKIAAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            E      L +            P +  + G D  +  + + ++   S  +   + 
Sbjct: 466 KEVFVVKDLPLEEYAESLGLPGAPRIKFIKGEDTKKRKNASRQLAALSSGDETDTD 521


>gi|307200175|gb|EFN80473.1| ATP-dependent RNA helicase bel [Harpegnathos saltator]
          Length = 611

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 112/360 (31%), Positives = 184/360 (51%), Gaps = 20/360 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + ++I  +++  GY   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 216 ITSFDEVKLTEIIKNSIALAGYDKPTPVQKYAIPIIIGRRDVMACAQTGSGKTAAFLVPI 275

Query: 59  ASTLLAENDRFSPASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +     R  P  A        PL L +APTRELA Q+  E      ++ +  AV  G
Sbjct: 276 LNQIYESGPRPPPPQASTGRRKQYPLGLVLAPTRELATQIYDEARKFAYRSRMRPAVVYG 335

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G ++  + R+L  G H++V TPGRL D +    + + + + +VLDEAD MLD+GF   I 
Sbjct: 336 GSNIVDQMRELDRGCHLLVATPGRLVDMLGRGKIGLHNCRYLVLDEADRMLDMGFEPQIR 395

Query: 171 FILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I+           + LMFSAT    I  LA+++  + + + +        +I  + V V
Sbjct: 396 RIVQQDNMPPTGERQTLMFSATFPKEIQILARDFLSNYIFLAVGRVGSTSENITQKIVWV 455

Query: 227 ALSDRDNAIV------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              D+ + ++      N          +VF  T+       + LA+  + V ++ G+ +Q
Sbjct: 456 EEHDKRSYLLDLLQASNFADSSAESLTLVFVETKKGADMLEEYLAQMGYPVTSIHGDRTQ 515

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER  AL+  R G+A + +AT VAARG+D+P ++ VI+ +L  + E  +HR GRTGR G 
Sbjct: 516 REREEALRRFRAGKAPILVATAVAARGLDIPHVKHVINFDLPGDVEEYVHRIGRTGRMGN 575


>gi|304311852|ref|YP_003811450.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301797585|emb|CBL45806.1| Superfamily II DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 458

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 200/368 (54%), Gaps = 8/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L   GY  +T +Q   L P L   DV+  ++TGSGKT AFG+ + ++L   N
Sbjct: 11  LPPHLVENLRGLGYSQMTPIQAQALPPILDGADVIAQSKTGSGKTAAFGIGVLTSL---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
            RF       AL + PTRELA QV +EL  L      + +    GG ++  +   L++GA
Sbjct: 68  PRF---FGTQALVLCPTRELADQVAKELRRLARSLQNIKILTLCGGTAIGPQFASLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGR+  H+    L++  LK +VLDEAD MLD+GF D I  I    PK+R+ L+F
Sbjct: 125 HIIVGTPGRVTKHLDKGSLDLQGLKTLVLDEADRMLDMGFYDQIAEIARFIPKRRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT +PAI  L++N+Q + V + + S +      +     V    R  A+  +L+    +
Sbjct: 185 SATYTPAIRELSRNFQSNPVEITVESVHADSEI-EQYFYEVDHKQRRRALSALLKNFKPE 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A++FC+T+         L    F    L G++ Q++R   L    +      +ATDVAA
Sbjct: 244 SAVLFCNTKQLCDEVADALNAQGFYAQTLHGDMEQRDRDLVLLKFSNRSCPYLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL  V++ +++ +P+  +HR GRTGRAG+KG+++ +      +RA  +      
Sbjct: 304 RGLDIKDLAAVVNVDVAFDPDVHIHRIGRTGRAGQKGLALSLCSPAEVQRANAIETLLGR 363

Query: 366 SVVWEPAP 373
            + W   P
Sbjct: 364 PLHWRDLP 371



 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 24/77 (31%)

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                            ++  G + K     ++  L   +G+   SIG I +    T+V 
Sbjct: 371 PPSNDNETPEPPRMVTLNIGGGKRDKLRPGDILGALTGDAGLPGASIGKIDIGDQQTYVA 430

Query: 513 VSADGVDLLRRTVKLDK 529
           V         + ++  K
Sbjct: 431 VERAIAQKAVKRLQSGK 447


>gi|148989841|ref|ZP_01821135.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
 gi|147924783|gb|EDK75867.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73]
          Length = 401

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 189/414 (45%), Gaps = 28/414 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I EAL E  +   T VQ+ ++   L  +D++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YIREALKELKFTTPTEVQDKLIPIVLAGRDLVGESKTGSGKTHTFLLPIFQQLD 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRD 120
             +D      +  A+  AP+RELA Q+ +    + A + V V V           +  + 
Sbjct: 65  EASD------SVQAVITAPSRELATQIYQVARQISAHSDVEVRVVNYVGGTDKARQIEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S PK  
Sbjct: 119 ASNQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDL 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSATI   +    K Y  + V   I ++      ID   +     D++  I  + +
Sbjct: 179 QFMVFSATIPQKLQPFLKKYLSNPVMEKIKTKTVISDTIDNWLISTKGHDKNAQIYQLTQ 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A++F +T+         L     +V  + G+++ +ER   +  +++      +A
Sbjct: 239 LMQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVQNLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +   + + + P             ++++D  F D+   D +   +    K D E
Sbjct: 359 K---LGIKFSP-------------KMVKDGEFQDTYDRDRRANREKKQDKLDIE 396


>gi|84495604|ref|ZP_00994723.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
 gi|84385097|gb|EAQ00977.1| ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
          Length = 514

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 175/360 (48%), Gaps = 3/360 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L+ER  ++ T +Q A L   L  +DVL   +TGSGKT AF L + + L A  
Sbjct: 25  VPESLVRVLAERDILSPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPMLARLSAGG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P AL +APTRELA+Q+   L  L    G+      GGV    +   +  G  
Sbjct: 85  TRRQ-AKRPRALILAPTRELAIQIDEALAPLAQPLGITSKTVFGGVGQGPQVNAITRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV  PGRL D +    + +  ++  +LDEAD M DLGF   ++ ILD +P+  + ++FS
Sbjct: 144 VVVACPGRLEDLMNQGHVILDAVEITILDEADHMADLGFLPVVKRILDKTPRNGQRMLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL K Y    V     S     S + +  + V      +  V          
Sbjct: 204 ATLDAGVNTLVKRYLNSPVTHEADSAQSPVSTMSHHVLHVTTDG--HLQVLRDLTAAPGR 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  + L       V L G LSQ  R+  +     G A   +ATD+AAR
Sbjct: 262 KVVFTRTKHRAKKIARQLNAEGIPAVELHGNLSQNARTRTMDAFHAGTAHTLVATDIAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++  +  R    L R+A ++
Sbjct: 322 GIHVDDVSLVIHADPPVEHKAYLHRSGRTARAGNSGTVVTLMTDDQVRDVRDLTRKAGIN 381


>gi|302668010|ref|XP_003025583.1| hypothetical protein TRV_00223 [Trichophyton verrucosum HKI 0517]
 gi|291189698|gb|EFE44972.1| hypothetical protein TRV_00223 [Trichophyton verrucosum HKI 0517]
          Length = 714

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++   +   GY+  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 245 IKSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 304

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 305 LSKLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 364

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 365 LRPCVIYGGGPSRDQRMELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELL 424

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 425 KSDWDVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTH 484

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 485 LNVTQQFVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 544

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 545 DRTQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRI 604

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 605 GRTARIGNPGLATSFYNDKNSDIASDLVK 633


>gi|332374906|gb|AEE62594.1| unknown [Dendroctonus ponderosae]
          Length = 458

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 100/393 (25%), Positives = 177/393 (45%), Gaps = 21/393 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  N+   + + + E G+   + +QE  L   L +  ++++  AQ+G+GKT AF L
Sbjct: 71  VKTFEALNLKPNLLKGVYEMGFNAPSKIQEMALPTLLADPCQNLIAQAQSGTGKTAAFVL 130

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S ++ +         P  L ++PT ELA+Q G     +      +       V    
Sbjct: 131 AMLSRVVPDKH------YPQVLCLSPTYELAIQTGEVAANMAKFCPEIE--MRFAVRGEM 182

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILD 174
             R  +   HIV+GTPG++ D  + K L++  +   VLDEAD M+D     D  I    D
Sbjct: 183 LPRGTKIAEHIVIGTPGKVLDWTKQKHLDLKKITVFVLDEADVMIDQQGHQDQCIRIHKD 242

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
            S   + +   +      +       +   V      E    +   Y        ++ NA
Sbjct: 243 LSASCQMLFFSATYSQEVMDFAEHIVKNPIVIRLRREEESLDNIGQYYFKCSTADEKYNA 302

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + NI        AI FC T+      ++ ++     V  LSG+L+ ++R N L   R+G+
Sbjct: 303 LTNIYGTLSIGQAINFCRTKKMAEWLSQKMSNDGHAVAILSGDLTVEQRINVLDRFREGK 362

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI 348
            +V I T+V +RGID+  + +V++ +L       ++ E  LHR GRTGR G+KG+++ ++
Sbjct: 363 EKVLITTNVLSRGIDVEQVTIVVNFDLPVNVEGKADCETYLHRIGRTGRFGKKGLAINLV 422

Query: 349 PQN-MQRRAERLFREANVSVVWEPAPSVEAIRE 380
             +   +    +       + +  A   + I +
Sbjct: 423 DSDSSMKILRDIEEHFGRKIQYLNADDCDEIEK 455


>gi|156552297|ref|XP_001600622.1| PREDICTED: similar to LD28101p [Nasonia vitripennis]
          Length = 782

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 104/444 (23%), Positives = 190/444 (42%), Gaps = 15/444 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +   + +RGY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L    
Sbjct: 45  LSQSVIRGILKRGYKIPTPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMFEKLKTRQ 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  R ++ +   TG+  +V +GG S+  +   +     
Sbjct: 105 AK----TGARALILSPTRELALQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHGNPD 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         +N+  ++ V+ DEAD + ++GF + I  I +  PK R+ L+FS
Sbjct: 161 IIVATPGRFLHICIEMDMNLKSIEFVIFDEADRLFEMGFGEQIHEIANRLPKNRQTLLFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHGA 244
           AT+   +   A    ++ V V +  E++   ++    +     ++      +        
Sbjct: 221 ATLPKVLVEFATAGLRNPVLVRLDVESKLPDELKLCFITCRPEEKLAVLMCLLKQVIKPG 280

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T   V    ++L +       +   L    R       ++G+ +V + TDVA
Sbjct: 281 AQTVIFAATMHHVEYIHQILDQAGILNTFIYSNLDPSARKINAAKFQNGKVKVLVVTDVA 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 341 ARGIDIPHLDNVINFNFPAKSKLFIHRVGRCARAGRSGTAYNIVAPDEYAYLLDLHLFLG 400

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
            S    P    + I E    ++ Q  +         ++ +  L+A H+     A    + 
Sbjct: 401 RSFNIVPVSEAKNIPEGSIGKMPQSMI---------EEELSELIAWHENVTDIANMQNVC 451

Query: 425 RAGLCAPEEITPVSLVSGRDRFRD 448
                      P +      R ++
Sbjct: 452 NNAYQQYCRSRPPASAESNKRIKE 475


>gi|328869570|gb|EGG17948.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
          Length = 631

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 18/382 (4%)

Query: 1   MKIFENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    +P+ I   L E +G    T +Q   L   L  +D++  A TGSGKT+ F L + 
Sbjct: 190 MK----LPREIIRYLKEAKGIKKPTPIQIQGLPVALSGRDMIGIAFTGSGKTLVFALPMV 245

Query: 60  STLLAENDR--FSPASAPLALAIAPTRELAVQVGR------ELEWLYAKTGVVVAVCIGG 111
              +    R        P  L I P+RELA Q         +         +   + IGG
Sbjct: 246 LLAMDAEKRLPIEAGEGPFGLIICPSRELARQTYDLVNALSDAIKKERGFELRTLLAIGG 305

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  +    + G H++V TPGRL D +  + +++++ K + LDEAD ++DLGF DDI  
Sbjct: 306 IDMGEQEHLFKRGIHMIVATPGRLIDLLNKRRVSLAYCKYLGLDEADRLIDLGFEDDIRT 365

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           ++D    +R+ L+FSAT+   I T A++     V VN+      + D+      V    +
Sbjct: 366 VMDYFQGQRQTLLFSATMPKKIQTFARSALVRPVEVNVGRAGAANLDVIQEVEYVKQESK 425

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       ++FC  +  V    + L     + VA+ G+ SQ+ER  A++  +
Sbjct: 426 IVYLLECLQKTAPP-VLIFCENKKDVDDIHEYLLLKQVEAVAVHGDKSQEERDTAIKAFK 484

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           DG+  V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I +N
Sbjct: 485 DGKKDVLVATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRCGKTGVATTFINKN 544

Query: 352 MQR----RAERLFREANVSVVW 369
                    + L  E+   V  
Sbjct: 545 QSESVLLDLKHLLIESKQKVPQ 566


>gi|4689114|gb|AAD27766.1|AF077033_1 putative ATP-dependent RNA helicase ROK1 [Homo sapiens]
          Length = 598

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 145/383 (37%), Gaps = 21/383 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +     +    ++ T      ++  +      L +V     DE   L             
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLLKMQTGSETSWLP 336

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-------DYRAVLVALS 229
                    S     + T      Q       ++S     +              + + +
Sbjct: 337 FSWPAHPTRSEEPMFSATFAYDVEQWCNSTWTMSSVCPLEARNSAVETVEQELLFVGSET 396

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +  A+  +++       +VF  +          L      V  +  E +QQ+R N +  
Sbjct: 397 GKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHS 456

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++    
Sbjct: 457 FRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 516

Query: 350 QNMQ---RRAERLFREANVSVVW 369
           ++ +   R    + ++A   V  
Sbjct: 517 EDDKPLLRSVANVIQQAGCPVPE 539


>gi|331015254|gb|EGH95310.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 484

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 101 NLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 160

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 161 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 220

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 221 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 280

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 281 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 340

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 341 NGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 400

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 401 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 460

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 461 KLGRKISCETPPT 473


>gi|254381813|ref|ZP_04997176.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194340721|gb|EDX21687.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 518

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 130/380 (34%), Positives = 197/380 (51%), Gaps = 14/380 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F ++   P+   EAL   G V+   +QE  L   L   DV+  A+TG+GKT+ FGL 
Sbjct: 33  LTTFRDLGIFPET-AEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLP 91

Query: 58  LASTL----LAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           L   +      E  R +P     +P AL + PTREL  QV  +L        V V    G
Sbjct: 92  LLERVIVPADVEAGRATPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYG 151

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   +   L+ G  ++VGTPGRL D    K L++S +KA+VLDEADEMLDLGF  D+E
Sbjct: 152 GRAYEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVE 211

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVLVA 227
            I++  P KR+ ++FSAT+  A+  LA+ Y      +   S        ++I        
Sbjct: 212 KIINYLPPKRQTMLFSATMPGAVIGLARRYMTQPTHIRATSPEGEGVTVANIKQHVFRAH 271

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  IL+  G   A++FC T+ + +   + L +  F   A+ G+L Q  R  AL
Sbjct: 272 NMDKPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLEKRGFASGAVHGDLGQGAREQAL 331

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG KG++V +
Sbjct: 332 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQAPEDEKTFLHRVGRTGRAGNKGIAVTL 391

Query: 348 IPQNMQRRAERLFREANVSV 367
           +  +   R + + +   +  
Sbjct: 392 VDWDDIPRWQLINKALELDF 411


>gi|125586856|gb|EAZ27520.1| hypothetical protein OsJ_11472 [Oryza sativa Japonica Group]
          Length = 394

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 188/381 (49%), Gaps = 19/381 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   I + +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++
Sbjct: 30  ISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSV 89

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       +      AL ++PTRELA Q  R +  +     + V  CIGG S+  + 
Sbjct: 90  CQIVD------TAVREVQALILSPTRELAAQTERVMLAIGDYINIQVHACIGGKSIGEDI 143

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G H+V GTPGR+CD I+ + L    +K ++LDEADEML  GF+D I  +    P 
Sbjct: 144 RKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPP 203

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVN 237
           + ++ + SAT+   I  +   +  D VR+ +  +      I    V +     + + + +
Sbjct: 204 ELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCD 263

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV
Sbjct: 264 LYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRV 323

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD          + LVI+ +L +N E  +HR GR+GR GRKG+++  + +   R   
Sbjct: 324 LITTD----------VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILR 373

Query: 358 RLFREANVSVVWEPAPSVEAI 378
            + +  +  +   P    + I
Sbjct: 374 DIEQYYSTQIDEMPMNVADLI 394


>gi|15226155|ref|NP_180929.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|75319077|sp|P93008|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|1707017|gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|17473908|gb|AAL38370.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|20259792|gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
           [Arabidopsis thaliana]
 gi|330253781|gb|AEC08875.1| DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana]
          Length = 733

 Score =  176 bits (446), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 121/394 (30%), Positives = 196/394 (49%), Gaps = 24/394 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  L      +    P A+ +APTRELA Q+  E        G  V   +GG S+  
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------- 169
           +   +  G  IV+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +       
Sbjct: 432 QGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAM 491

Query: 170 ----------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                     E  LD     R   MFSAT+ P +  LA+ Y ++ V V I +  +    I
Sbjct: 492 PSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLI 551

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
               +++  S++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  S
Sbjct: 552 SQHVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKS 611

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  +L+  R  R  V +ATDV  RGID+PD+  VI+ ++  + E   HR GRTGRAG
Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671

Query: 340 RKGMSVFVIPQNMQ---RRAERLFREANVSVVWE 370
           + G++   +  +        +++  ++N +V  E
Sbjct: 672 KSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPE 705


>gi|319939694|ref|ZP_08014053.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
 gi|319811283|gb|EFW07589.1| ATP-dependent RNA helicase [Streptococcus anginosus 1_2_62CV]
          Length = 447

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MEFTEFKFKDYIQEALKDLNFVEATEVQEKLIPVVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  +      A +   +  AP+RELA Q+ +    + A +   + V           +
Sbjct: 61  QKLNED------ADSVQVVITAPSRELARQIYQAARQIAAFSDKEIRVAHYVGGTDKNRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I  S 
Sbjct: 115 IGKLSSSQPHIVIGTPGRIYDLVESGDLAIHKAHTFVVDEADMTLDMGFLMTVDKIASSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   +     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVIEQIKTKTVISDTIENWLISTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 EITQLLQPYLAMIFVNTKTRADELHSYLTAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             +++++  F D+   D +   +    K D E I
Sbjct: 355 RELEK---MGIHFNP-------------KMIKNGEFQDTYDRDRRANREKTQEKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|300932825|ref|ZP_07148081.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 420

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 185/366 (50%), Gaps = 4/366 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I + L+ R   +  ++QE  L   L  KD++  A+TG GKT  FG+ L   +  +    
Sbjct: 17  EICDGLATRDITHAFAIQELCLPLALAGKDLIGQARTGMGKTYGFGIPLLDRVFDDAHVT 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNGAHI 127
            P  +P AL I PTREL +QV  +L         +   A+  G     + ++  Q  + +
Sbjct: 77  PPDGSPRALVIVPTRELCIQVADDLTIAAQFLPEINVLALYGGVKFETQIQQLQQGHSDV 136

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VGTPGRL D  R   L + +++ VVLDEADEMLD GF DD++ ++  + + R+M++FSA
Sbjct: 137 LVGTPGRLLDLHRRGELVLENVEIVVLDEADEMLDQGFLDDVQALIAETSENRQMMLFSA 196

Query: 188 TISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           T+   I   +         +R + A   + H+     A      DR +A+  IL+  G  
Sbjct: 197 TMPGPIMALSRTFMRHPVQIRADQAQSQQTHATTTQLAFQSHKLDRMSALARILQTPGRG 256

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF  T+   +     L E  F   A+ G++ Q ER   L+  R+G   V +ATDVAA
Sbjct: 257 RTMVFTRTKKQAAFVASDLGELGFAAGAVHGDMRQHERQQCLEAFREGTVDVLVATDVAA 316

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ D+  VI+ +   +    +HR GRTGRAG  GM+V ++  +   R   L    N+
Sbjct: 317 RGIDVEDVTHVINYQCPDDDRAYVHRIGRTGRAGHTGMAVTLVGWDEVDRFNALCETLNL 376

Query: 366 SVVWEP 371
            +   P
Sbjct: 377 DLSNPP 382


>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 944

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 147/600 (24%), Positives = 257/600 (42%), Gaps = 42/600 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + +  A+   GYV  TSVQ+  +   L  +DV  SA TGSGKT AF L +   LL  
Sbjct: 313 NISRPLLRAVEAMGYVTPTSVQQRAVPFALAGRDVCASATTGSGKTAAFLLPILERLLYR 372

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNG 124
             + +       + I PTREL VQ+      L   T +  A V  G  ++  +  +L+  
Sbjct: 373 PKKVA---VTRVMIITPTRELGVQIHSMCRSLSQFTDIACALVVGGNKNLKAQEAELRAR 429

Query: 125 AHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR+ DH      +++  ++ +VLDEAD +L+LGF++++  ++ S P  R+ L
Sbjct: 430 PDIVICTPGRMVDHLTNSASVHMDDVEILVLDEADRLLELGFQEEVAELVKSCPIGRQTL 489

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILR 240
           +FSAT++  +  LA       VRV  +  N     +    V +  S    R+  ++++L 
Sbjct: 490 LFSATMNTKVDDLASLALNKPVRVKASPMNSAPQRLVQEFVRIRQSREQDREAILLSLLT 549

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF  T+    R   VL     +   L G L+  +R  AL   + G   V +A
Sbjct: 550 RTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLEALDRFKSGDVTVLVA 609

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+ E+  + ++ +HR GRT RAG  G SV +I ++ +   + + 
Sbjct: 610 TDLAARGLDITGVHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVL 669

Query: 361 REANVSVVWE----PAPSVEAIRERD--AQRILQDPLFLDSIQGDEK-----KMVDVLLA 409
           +     V  +    P  +++  R +    +  ++  L  + ++ +E+         V L 
Sbjct: 670 KTQGEGVEIKSRAVPQSAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRAVNLV 729

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD-----------------RFRDDSRA 452
           +H  E  A    R  R  + + +  T ++  S  +                     D+  
Sbjct: 730 EHQKEIHA----RPARQWIVSQQRKTELAEESKAEAVAQALKAAGKTTIPVPPRGGDADR 785

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
                G+    +      L+   +++  AR       +      ++ G   V  +++   
Sbjct: 786 GNTDQGAAKKEREQKLHRLTRKKRRRILAREADEREAKEEAEELKAQGK-SVPSNVSSKS 844

Query: 513 VSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFK-SKNSQDGATKRFKRFKGAS 571
           +        R   K ++   L  L G K        S F    N++ G   + K  +G +
Sbjct: 845 MVRAAKKEAREAEKKNEDKPLAQLRGAKRKLDVGSGSAFDFDLNTKKGGAAKGKDGEGKA 904


>gi|242022035|ref|XP_002431447.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212516735|gb|EEB18709.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 636

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 123/488 (25%), Positives = 224/488 (45%), Gaps = 30/488 (6%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +   +A+ + G+  +T +Q   + P L  +D++ SA+TGSGKT+AF + +   +     +
Sbjct: 152 ENTLKAIVDMGFTTMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPVVELIY--KLK 209

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F P +   A+ I+PTREL++Q    L+ L         + IGG +   E   L  G +I+
Sbjct: 210 FLPRNGVGAIIISPTRELSMQTFGVLKELMKYHYHTYGLVIGGANRKAEAEKLSKGINIL 269

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I++  PK+R+ ++FSA
Sbjct: 270 VATPGRLLDHLQNTPGFLFKNLQCLVIDEADRILDIGFEEELKQIINLLPKRRQTMLFSA 329

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGA 244
           T +     L K   K         + ++ + +   +   V+     R   +   L+ +  
Sbjct: 330 TTTAKTENLTKLALKKEPVYVGIDDRKEKATVEGLEQGYVVCPSEKRFLLLFTFLKKNKK 389

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF S+  SV    ++L      V+ + G+  Q +R+       +  + + + TDVA
Sbjct: 390 KKVMVFFSSCLSVKFHHELLNYIDLPVMCIHGKQKQAKRTTVFFQFCNAESGILLCTDVA 449

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFREA 363
           ARG+D+P ++ ++  +   +P+  +HR GRT R  G  G ++ ++         R  ++A
Sbjct: 450 ARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGEGSSGHALLILRPEELGFL-RYLKQA 508

Query: 364 NVSV-VWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKH---------- 411
            V +  +E + S  A  +   ++++    FL+ S +   K  V    + H          
Sbjct: 509 RVPLNEFEFSWSKIADIQVQLEKLIGKNYFLNLSAKEAFKSYVRAYDSHHLKNIFDVNTL 568

Query: 412 DPEKIAAGFLRIHRAGLCAPE----EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           D EK+A  F      G   P     ++  V     R R       +     S    + S 
Sbjct: 569 DLEKVATSF------GFTVPPRVDLQVGGVKSDRPRKRGGGGGFGYSKSFNSNKKERKSI 622

Query: 468 WFSLSVGS 475
            F    G 
Sbjct: 623 IFKQPKGK 630


>gi|116181632|ref|XP_001220665.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
 gi|118597484|sp|Q2HEB0|PRP28_CHAGB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|88185741|gb|EAQ93209.1| hypothetical protein CHGG_01444 [Chaetomium globosum CBS 148.51]
          Length = 705

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 108/409 (26%), Positives = 184/409 (44%), Gaps = 32/409 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            N+P+ + E +   GY   T +Q A +    + +D++  A TGSGKT AF L L   +  
Sbjct: 274 SNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISE 333

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L     F+    P AL +APTREL  Q+  E        G  V   +GG S+  +   L+
Sbjct: 334 LPPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALR 393

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NGA I+V TPGRL D +  + L  S    +++DEAD M+D GF + +  ILD+ P     
Sbjct: 394 NGAEIIVATPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANEK 453

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------S 217
                  +  + +     +    +  + +                               
Sbjct: 454 PDTEDAENSQLMSRYLGGKDRYRQTMMYTATMPPLVEKIAKKYLRRPAIVTIGNAGEAVD 513

Query: 218 DIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   V+  D+    +  +          IVF + + +     K +    +  V L 
Sbjct: 514 TVEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYSTVTLH 573

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  +L  +R+G+A + +ATD+A RGID+ D+ LV++  + S+ E   HR GRT
Sbjct: 574 GSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRT 633

Query: 336 GRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 634 GRAGKSGVAITFLGNEDSDVMYDLKQIISKSSISKVPEELRRHEAAQSK 682


>gi|317151291|ref|XP_001824556.2| DEAD/DEAH box RNA helicase [Aspergillus oryzae RIB40]
          Length = 593

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 96/400 (24%), Positives = 173/400 (43%), Gaps = 32/400 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  ++ E +    Y   T +Q   +   +   D++  AQTGSGKT AF + +
Sbjct: 134 IKSFDDAGLHPIVRENVKLCHYDIPTPIQAYAIPAVMTGHDLIAIAQTGSGKTAAFLIPV 193

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 194 LSKLMGKAKKLAAPRPNLADGFNPIVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 253

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG  V  +R +LQ G  I++GTPGRL D +    + ++  +K  ++DEADE+L
Sbjct: 254 LRPCVVYGGAPVRDQRDELQKGCDILIGTPGRLLDFMDKPHILSLRRVKYTIIDEADELL 313

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  D         ++     R M+  +           K    D VR+ I      H
Sbjct: 314 LADWESDFNKIMSGGDMNEDADHRYMMFSATFNKECRQLARKFLAGDHVRIRIGRPGSTH 373

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++D   V      +   + ++L        ++F +++A        L        ++  
Sbjct: 374 INVDQTIVYSEEHLKKQCLYDLLLAMPPSRTLIFVNSKAQADLLDDYLYNMGLPSTSIHS 433

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRS 332
           + +Q+ER +AL+  R  +  + +AT V+ARG+D+ ++  V++ +L           +HR 
Sbjct: 434 DRTQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNYDLPRQSHGGIVEYVHRI 493

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAE----RLFREANVSVV 368
           GRT R G +G++      +          RL  E N  + 
Sbjct: 494 GRTARIGNEGLATSFYNHDRDSDLAPDLVRLLLETNQKIP 533


>gi|302815317|ref|XP_002989340.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
 gi|300142918|gb|EFJ09614.1| hypothetical protein SELMODRAFT_41331 [Selaginella moellendorffii]
          Length = 653

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 121/356 (33%), Positives = 192/356 (53%), Gaps = 4/356 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++  A++++GY N T +Q   L   L  +D++  A+TGSGKT AF L +   ++ + 
Sbjct: 190 LDSLLMGAITKQGYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIM-DQ 248

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+ +  APTRELA Q+  E        G+ V+   GG+S   + ++L+ G  
Sbjct: 249 EELGKGEGPIGVICAPTRELAQQIFNESRKFAKPYGIRVSGVFGGMSKLDQFKELKAGCE 308

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D ++ K L +     +VLDEAD M DLGF   I  I+      R+ L+FS
Sbjct: 309 IVVATPGRLIDMLKMKALTMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 368

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILRYHGA- 244
           AT+   + TLA+      VRV      R + D+   A +VA   D+   +++ L      
Sbjct: 369 ATMPRRVETLAREVLSAPVRVTAGEVGRANEDVTQVAQIVATDADKLQWMLSKLPQMVDA 428

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VF ST+  V    K L +  F+V AL G+  Q  R + LQ  + G+  V +ATDVA
Sbjct: 429 GDVLVFASTKVRVEELEKHLQDSGFKVAALHGDKDQASRVDVLQGFKSGQFHVLVATDVA 488

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQRRAERL 359
           ARG+D+  ++ V++ + + + +  +HR GRTGRAG ++G++  ++ Q   R A  L
Sbjct: 489 ARGLDIKSIKTVVNYDTAKDMDTHVHRVGRTGRAGDKEGVAYTLVAQKEARFAGDL 544


>gi|238753931|ref|ZP_04615291.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
 gi|238707919|gb|EEQ00277.1| ATP-dependent RNA helicase srmB [Yersinia ruckeri ATCC 29473]
          Length = 437

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 202/418 (48%), Gaps = 9/418 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  DLDDRLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPALQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  +   L   T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       +  +   +V++L+   
Sbjct: 188 SATLEGEAIREFAERILEEPVELEADPSRRERKKIQQWYYRADDIEHKTALLVHLLKQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +I+F  TR  V +    L E       L GE+ Q +R+ A+  + DGR  V +ATD+
Sbjct: 248 VQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVNVLVATDI 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           A+RG+D+ D+  V + +L    +  LHR GRTGRAGRKG+++ ++  +      R  R  
Sbjct: 308 ASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLLGRIGRYL 367

Query: 361 RE-ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           +E     V+ E  P+ +    +   +  +  L     ++   K+   V +   D + +
Sbjct: 368 KEPLKPRVIDELRPTSKEPSAKSTGKPSKKVLAKRKELKEASKEKTKVKVRHRDAKNV 425


>gi|325094386|gb|EGC47696.1| ATP-dependent RNA helicase DBP4 [Ajellomyces capsulatus H88]
          Length = 811

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 185/398 (46%), Gaps = 10/398 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            + F ++P  +   + LS   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  FEAFSDLPLSEPTADGLSAGHFKSLTDIQARAIPYALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG  +  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKGLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I+D  PK
Sbjct: 166 ERLGKMNILVCTPGRMLQHMDQTAAFDTNHIQLLVLDEADRIMDMGFQSTVDAIIDHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   V++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTKKVSDLARLSLRDPEYVSVHETAASATPAKLQQNYIITPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       IVF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIIVFFSSGKQVRFVYESFRHMRPGIPLLHLHGRQKQGARVDITKKFSAAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 YACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDP 390
              +   +  + +      S +   I+ +      +DP
Sbjct: 406 GMLKRLEQKKIPIEKINVRSKKQQSIKNQLQNMCFKDP 443


>gi|308496397|ref|XP_003110386.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
 gi|308243727|gb|EFO87679.1| hypothetical protein CRE_05666 [Caenorhabditis remanei]
          Length = 562

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 111/370 (30%), Positives = 176/370 (47%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L  + +   T +Q       +  +D++  A+TGSGKT+AF L        + 
Sbjct: 140 LPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHTTKQP 198

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV           G+ +    GG S   + RDL+ G  
Sbjct: 199 HR-QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 257

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 258 VVVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFS 317

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRDNAIVNILRYH 242
           AT    + ++A ++QKDA  +N+ S     +    +            +   ++N +   
Sbjct: 318 ATWPKEVRSMASDFQKDAAFLNVGSLELAANHNITQVVDILEEHGKQAKLMDLLNQIMNQ 377

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATD
Sbjct: 378 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPILLATD 437

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+ D++ VI+ +  +N E+ +HR GRTGR  +KG +          +A+ L + 
Sbjct: 438 VAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKAKDLLKV 497

Query: 362 --EANVSVVW 369
             EA  +V  
Sbjct: 498 LDEAKQTVPQ 507


>gi|163751114|ref|ZP_02158344.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
 gi|161329070|gb|EDQ00142.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
           benthica KT99]
          Length = 445

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 170/363 (46%), Gaps = 6/363 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ + +   L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDKRLLNTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRII--STRALSKRDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSS 176
            L    H VV TPGRL DH+    L+++ L+ ++LDEAD MLDLGF +    I    D  
Sbjct: 119 LLARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +          A+  +        A             +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHGLISNIAAELLKSPEHVDIGAGNIENQDITQRIYLADHLDHKEALLD 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL     K  I+F +TR    R    LA    +  +LSG L Q  R+  +     G  +
Sbjct: 239 SILNNETHKQIIIFTATRDDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TD+A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++  +        
Sbjct: 299 ILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISFVGPKDWLSF 358

Query: 357 ERL 359
           +++
Sbjct: 359 KQI 361


>gi|142982571|sp|P0C2N7|DRS1_CHAGB RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 795

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 215/482 (44%), Gaps = 19/482 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 282 SLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLY- 340

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R         + + PTRELA+Q       L + T +   + +GG+S+  +  +L+   
Sbjct: 341 --RPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKFCLAVGGLSLKVQEGELRLRP 398

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGR  DH+R      +  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 399 DVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 458

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++  +  L +       R+ + S+ +    +    V +     +  +  +  Y   
Sbjct: 459 FSATMTSTVDKLIRVGLNKPARIMVDSQKQTAVTLAQEFVRLRPGREEKRMGYLGPYLQD 518

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
               V  ++   +        +     +A + E     +       RDG+    +ATD+A
Sbjct: 519 P---VHRTSHYLLQAEEDCSPDPDHLRLAGAFEHRAPWKHEPGSAFRDGKVNYLLATDLA 575

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+  ++ VI+ E   + E  +HR GRT RAGR G+++ +  +  ++  +   R   
Sbjct: 576 SRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAITLAAEPDRKVVKAAVRAGK 635

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
                  +  ++A    DA +      + D I   + ++ ++L  + + +++A   +++ 
Sbjct: 636 AQGAKIISRVIDA---ADADK------WQDQIDEMDDEIDEILQEEKEEKQLAQIEMQVK 686

Query: 425 RAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
           +    +   EEI      +  +   D  +A ++G    +  + +       G     + +
Sbjct: 687 KGENLIKHEEEIHARPKRTWFETQEDKKKAKELGRAELNGVRDAMK-KKGAGRLSNKDKK 745

Query: 483 WL 484
            L
Sbjct: 746 KL 747


>gi|301122021|ref|XP_002908737.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262099499|gb|EEY57551.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 518

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 189/429 (44%), Gaps = 52/429 (12%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     + +     G  + T VQ   + P L  +DV+  AQTGSGKT AF L +  
Sbjct: 53  SFLNLGVDPWLVKRCELLGIRHPTPVQAHCIPPILAGRDVIGCAQTGSGKTAAFALPILH 112

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL  +         P AL + PTRELA Q+  +     +   V  AV +GGV + ++   
Sbjct: 113 TLSKDP------YGPYALVLTPTRELAFQIADQFNAFGSSMAVRCAVIVGGVDMLKQSLT 166

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           LQ   HI+V TPGR  DH+          +K VVLDEAD +LD+ F  D+ FI D  P K
Sbjct: 167 LQQRPHIIVATPGRFRDHLLRADPPNISLVKYVVLDEADRLLDVSFAKDLSFIFDKLPTK 226

Query: 180 RRMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           R+ L+FSAT++             DA R +     +  + +    + +    +   ++ +
Sbjct: 227 RQTLLFSATMTANLDRLEQTALSDDAFRFDATPSVKTVATLKQFYLFIPAQVKMTYLMYL 286

Query: 239 LRYHGAKN--------------------------------------AIVFCSTRASVSRF 260
           ++                                             ++F +T       
Sbjct: 287 MKMLDPNEEEEEESNRKVTKSRKGKKDQELEKLLEAATSSKRQLRSMMIFVATCKMCELV 346

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
            ++  E   + V L   LSQ  R  AL   + G + + I+TDVA+RG+D+P++++V++ +
Sbjct: 347 GEIGNELGTKCVTLHSMLSQNRRLAALGKFKSGLSHILISTDVASRGLDIPEVDVVLNFD 406

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           L  + ++ +HR GRT RAGR G ++ ++ Q+     + +  +    +      + E    
Sbjct: 407 LPRDADDYIHRVGRTARAGRSGQAISLVTQHDIELLQNIEDKVGKKMDDYETDAPE---- 462

Query: 381 RDAQRILQD 389
           +   ++L D
Sbjct: 463 KKVLKLLND 471


>gi|71737101|ref|YP_273396.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557654|gb|AAZ36865.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 482

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 184/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  A+ + G+   T +Q  +L   L+ KD +  AQTG+GKT AF +++   L   
Sbjct: 99  NIAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQT 158

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   T   V+    G     + ++    
Sbjct: 159 PPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGGMDFDKQLKQLEAR 218

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 219 HCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 278

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I S N    +++     VA +D+   + N++  
Sbjct: 279 TLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTD 338

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +G    +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +AT
Sbjct: 339 NGWGRVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT 398

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  
Sbjct: 399 DVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEE 458

Query: 362 EANVSVVWEPAPS 374
           +    +  E  P+
Sbjct: 459 KLGRKISCETPPT 471


>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
 gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
 gi|91206589|sp|Q2UQI6|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
 gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
           NRRL3357]
          Length = 820

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 198/417 (47%), Gaps = 10/417 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + + 
Sbjct: 302 KSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL 361

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 362 ERLLFRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 418

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 419 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 478

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + S+     ++              R   +
Sbjct: 479 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYL 538

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++ +       IVF   +    R          +   L G +SQ++R  +++  R+G+ 
Sbjct: 539 LHLCKEVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGKV 598

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+AARG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 599 SFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 658

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +   + +        +  V+ A+ +R AQ+       ++++  +EK    +  A+ 
Sbjct: 659 VKAAVKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEM 715


>gi|70943453|ref|XP_741771.1| ATP-dependent RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56520361|emb|CAH82196.1| ATP-dependent RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 557

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 189/429 (44%), Gaps = 49/429 (11%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I   L+E  +   T++Q+      L  KD++  A+TGSGKT+AF L  
Sbjct: 130 ITQFSDLDFHESILNYLNE-NFKEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPC 188

Query: 59  ASTLLAENDRFSPASA--------------------------------------PLALAI 80
              +L         +                                          L +
Sbjct: 189 LMHILKHKQAEMEQNGGEHIKNNENKLSESNKNDNNYDPDFENEFQNEDNEDRKTYGLIL 248

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTREL +QV  E++    +  +      GGV  + +  +++ GA I+V TPGRL D++ 
Sbjct: 249 LPTRELCMQVLNEIKKFENELDLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLE 308

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT---TLA 197
              +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT    +       
Sbjct: 309 NGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQINKNKQLLFLTATWPEQVRKLAYDF 368

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            ++    +++  +      +      V  ++  +   +  +   +     ++FC T+ + 
Sbjct: 369 CSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNC 428

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L  H +  +++ G+  Q+ER   L   ++ R  + +ATDVA+RG+D+ ++ +VI
Sbjct: 429 DNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVI 488

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-----MQRRAERLFREANVSVVWEPA 372
           + ++ +  E+ +HR GRTGRAG KG S+   P +      QR A+ L +  N +    P 
Sbjct: 489 NYDIPNTIEDYIHRIGRTGRAGNKGKSILFFPYDYYVPQKQRFAKDLVKLLNKTNQQVPN 548

Query: 373 PSVEAIRER 381
              E +  R
Sbjct: 549 ELREIVSTR 557


>gi|148359632|ref|YP_001250839.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
 gi|148281405|gb|ABQ55493.1| ATP dependent RNA helicase DbpA [Legionella pneumophila str. Corby]
          Length = 468

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F   P  Q + ++L+   Y N+T +Q   L   LR +D++  A+TGSGKT AF L L +
Sbjct: 12  SFSQFPLRQELIKSLASSNYENMTPIQMQSLPIILRNEDIIAQAKTGSGKTAAFALCLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           A  AL + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFAVQALVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMQPQLG 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHI+VGTPGR+  H++   L++S +KA+VLDEAD MLD+GF DDI+ I+   PK+
Sbjct: 126 SLRHGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLDMGFFDDIKNIISICPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  L+K + KD   V++ +   +     +   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKRLSKQFMKDPKEVHVVTPPEEIDIEQHFYEVSRQAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+T+      T  L    F  +AL+G++ Q ER  A+    +    + +
Sbjct: 246 LHYRPVSVLIFCNTKQQTVEVTDQLINEGFSAIALNGDMEQIERDLAVLRFANQSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + +  +HR GRTGRAG KG+++ ++     +R   +
Sbjct: 306 ATDVAARGLDIKELSAVINFDLAFDHDIHIHRIGRTGRAGSKGIALSIVTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                  + W     +E
Sbjct: 366 EDNYPHPIHWGNINELE 382



 Score = 55.4 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 22/57 (38%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                  ++ G K K     ++  L + +G+   +IG I +    ++V +     D 
Sbjct: 391 PEMVTLCIASGKKDKIRPGDILGALTKDAGLAGNTIGKINITAMYSYVAIHHSQADK 447


>gi|169596224|ref|XP_001791536.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
 gi|111071244|gb|EAT92364.1| hypothetical protein SNOG_00869 [Phaeosphaeria nodorum SN15]
          Length = 598

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 192/414 (46%), Gaps = 29/414 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +    Y   T +Q   +   L  +DV+  AQTGSGKT AF + +
Sbjct: 119 VKEFDDAGLHPVMSENIKLCQYRFPTPIQSYCIPAVLSGRDVIGVAQTGSGKTAAFLIPI 178

Query: 59  ASTLLAE-----NDRFSPAS----------APLALAIAPTRELAVQVGRELEWLYAKTGV 103
            S L+ +       R +PA            PL L + PTRELA Q+  E   L  +T +
Sbjct: 179 LSRLMGKARQLAAPRPNPARYNPQTDRVRAEPLVLVVCPTRELACQIFDEARRLCYRTML 238

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLD 162
              V  GG     +R  L+ G  I++ TPGRL D +     L++  LK  ++DEADE+L 
Sbjct: 239 RPCVIYGGAPSRNQREQLEMGCDILIATPGRLMDFMGNISLLSLKRLKYTIIDEADELLS 298

Query: 163 LGFRDDIEF------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
            G+ + +E        ++S      ++  +     A     +  ++DAVR+ +      H
Sbjct: 299 NGWEEIMEKLFQGGGDINSDGDHTYLMFSATFPKEARRLAKEYMEEDAVRIKVGRVGSTH 358

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            +I  + V VA S+++ A+ +++        +VF +++         +      V ++  
Sbjct: 359 ENIKQQIVYVAESEKNQALFDLIFSEEPGRILVFTNSKFKCDTVDDFIYNKGLPVTSMHS 418

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRS 332
           + +Q+ER +AL+  R GR  + +AT V+ARG+D+ +++ VI+ +L S         +HR 
Sbjct: 419 DRTQREREDALRSFRTGRCPIMVATGVSARGLDVANIKHVINYDLPSTQHGGITEYIHRI 478

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
           GRT R G +G +            E L +   +    E    +E  +  + + I
Sbjct: 479 GRTARIGNEGKATSFFNDRNDDLGEDLCKIL-IEAKQEIPEFLEQFKPENPEAI 531


>gi|71999644|ref|NP_741348.2| hypothetical protein Y94H6A.5 [Caenorhabditis elegans]
 gi|51536859|gb|AAU05555.1| Hypothetical protein Y94H6A.5a [Caenorhabditis elegans]
          Length = 825

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 192/457 (42%), Gaps = 16/457 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++G+   T +Q   +   +  KDV+  ++TGSGKT AF + +   L    
Sbjct: 31  LDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKL---- 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  + ++ L   TG+  A  +GG  +  +   +     
Sbjct: 87  -KRRDTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL   I    L +S+++ VV DEAD + ++GF+D +   L   P+ R+ L+FS
Sbjct: 146 ILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   AK    D + V +  + +    +     +    ++  A   +        
Sbjct: 206 ATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRRMDREN 265

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VFC+T   V     +L         +  +L    R   +Q   + +  + + TDVA
Sbjct: 266 KQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVA 325

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+       +  +HR GR  RAGR G ++ +I  +       LF    
Sbjct: 326 ARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLG 385

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             + +    S     E    R+       DSI   E +    +   HD  +      +  
Sbjct: 386 KPINFASDKSEYKEDETLIGRVP------DSIVSLETEFFHSI---HDNNEDMQDLRQKA 436

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
              +       P        R + D R   V      
Sbjct: 437 TNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHP 473


>gi|50914756|ref|YP_060728.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
 gi|50903830|gb|AAT87545.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
          Length = 447

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 199/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQQRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|239989321|ref|ZP_04709985.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 527

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 198/386 (51%), Gaps = 13/386 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +  P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 82  VETFGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 141

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+ 
Sbjct: 142 LAR---TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQA 198

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 199 SALRGGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNP 258

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y KD V  ++       + +++  + V  +D+       
Sbjct: 259 DGQRMLFSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTE- 317

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V 
Sbjct: 318 -IAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVL 376

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 377 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTR 436

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQ 384
           L  +A ++      P V  +R  +A+
Sbjct: 437 LMADAGIT------PQVTQVRSGEAE 456


>gi|145351197|ref|XP_001419971.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580204|gb|ABO98264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 575

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 116/395 (29%), Positives = 192/395 (48%), Gaps = 18/395 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++PQ I  A+++ GY   + +Q A +   L ++DV+  A+TGSGKT AF + + + ++  
Sbjct: 161 SLPQEILRAIAQVGYEKPSPIQMASIPIGLLKRDVIGIAETGSGKTCAFVVPMLAHIMQL 220

Query: 66  NDRFSP--ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                   A  P AL +APTRELA Q+  E           V + +GG S+  +   L+ 
Sbjct: 221 PKMTDEIAAHGPYALIMAPTRELAQQIEEETLKFAQYLDYRVGLVVGGQSIEDQGFKLRK 280

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+VGTPGR+ D I  +   +S    +VLDEAD M+D+GF   +  ++++        
Sbjct: 281 GVEILVGTPGRIIDVIERRYTVLSQCNYIVLDEADRMIDMGFEPQVVAVMEAMGSGNLKP 340

Query: 184 M------------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                             S  +  LA++Y ++   V I S  +    I    + V+ ++R
Sbjct: 341 EDEAEELDGQALEQGGPTSSNVERLARSYLRNPAVVTIGSAGKTSDLIKQEIIWVSRNER 400

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D+    +L  H    AIVF + + SV     +     +   ++ G  SQ +R  +L+  +
Sbjct: 401 DSKFELVLSRHPNTQAIVFVNAKRSVDAVANLCYRLGYSCASIHGGKSQDQREESLRGFK 460

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   + +ATDVA RGID+  ++LV++ EL    EN  HR GRTGRAGRKG +V  +  +
Sbjct: 461 AGDYDILVATDVAGRGIDVKGIDLVVNYELPHTIENYTHRIGRTGRAGRKGTAVSFLTSD 520

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
            +     +  E    ++       +A+   +A R+
Sbjct: 521 DR----DIMYELKELLIESKNHVPDALANHEAARV 551


>gi|226291927|gb|EEH47355.1| ATP-dependent RNA helicase DBP4 [Paracoccidioides brasiliensis
           Pb18]
          Length = 814

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 187/400 (46%), Gaps = 10/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +   + LS   +  LTS+Q   L   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  VEAFADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + + ++ +VLDEAD ++D+GF++ ++ I++  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   +++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTQKVSDLARLSLQDPEYISVHEAASSATPAKLQQNYIVTPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       +VF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLF 392
              +   +  + +      + +   I+ +      +DP  
Sbjct: 406 AMLKRLEQKKIPIEKINVRTKKQQSIKHQLQNMCFKDPAL 445


>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
          Length = 828

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 210/487 (43%), Gaps = 34/487 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 304 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 363

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +     + + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 364 ERLLYRPRKVPTSR---VVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 420

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 421 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 480

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 481 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYL 540

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       IVF  ++    R   +      +V  L G +SQ++R  +++  RDG+ 
Sbjct: 541 IVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKV 600

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 601 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 660

Query: 356 AERLF---REANVSVVWEPAPSVEA-----------------IRERDAQRILQDPLF--- 392
            +      R     +V     + EA                 +RE   ++ L        
Sbjct: 661 VKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVT 720

Query: 393 --LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
              + +  D++ M        + EK      +     L  P +     L     +  DD+
Sbjct: 721 RGSNLLNHDKEIMSRPKRTWFESEKEKLQAKQRSLEELNGPSKKKKGKLSGKDKKKLDDN 780

Query: 451 RAFKVGG 457
           R  + G 
Sbjct: 781 RERREGK 787


>gi|330796382|ref|XP_003286246.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
 gi|325083751|gb|EGC37195.1| hypothetical protein DICPUDRAFT_54136 [Dictyostelium purpureum]
          Length = 630

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/399 (26%), Positives = 178/399 (44%), Gaps = 29/399 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P+ + +A+   GY   + +Q   +   +  +D+L  A+TGSGKT AF + +   +  
Sbjct: 215 SSLPRQVLDAVRHLGYEKPSPIQMQSIPVSVSGRDILGIAETGSGKTCAFVIPMCIYISK 274

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +    + + A  P A+ +APTREL  Q+ +E        G  V   +GG  +  +   L 
Sbjct: 275 QPRLTKETEAEGPYAVVMAPTRELVQQIEKETRNFAQFYGFRVVSLVGGQPIEEQAYQLG 334

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------------- 169
            G  IVV TPGRL D ++ + L ++    +VLDEAD M++LGF   +             
Sbjct: 335 KGCEIVVATPGRLNDCLQKRYLVLNQCNYIVLDEADMMINLGFESQVTSVLDAMPSTNLK 394

Query: 170 --------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                       D     R  ++FSAT+ P +  +AK Y +    + I    +    I  
Sbjct: 395 SENEELAERQETDRERVYRTTILFSATMPPQVEQIAKKYLRRPCTITIGEAGKVVDRIRQ 454

Query: 222 RAVLVALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             + V   + +   +V +++       I+F + +        VL E       L G  SQ
Sbjct: 455 TVIFVKSENDKKEHLVQLIKDGPPPPIIIFVNKKKHCENIGAVLEECGVSYTILHGGRSQ 514

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL   +   + V IAT VA+RGI +  +  VI+ ++ +N E+  HR GRTGRAG 
Sbjct: 515 EQREAALDNFKKKNSDVLIATGVASRGIHVDGVTHVINFDIPNNIEDYTHRIGRTGRAGS 574

Query: 341 KGMSVFVIPQ---NMQRRAERLFREAN--VSVVWEPAPS 374
            G++   I      +    + +    N  V +     P+
Sbjct: 575 SGLATSFISDKDTEIMYDLKNILTATNNIVPIELLKNPA 613


>gi|311694990|gb|ADP97863.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 427

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 113/368 (30%), Positives = 183/368 (49%), Gaps = 5/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A++  G+   T +Q   L   L  +D++  AQTG+GKT AF +    +LL  
Sbjct: 17  NLDKRLLDAITAIGFEYCTPIQAETLPWTLACEDLIGQAQTGTGKTAAFLITAIQSLLET 76

Query: 66  N--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQ 122
              ++   AS P  LA+APTRELA+Q+ ++ E L   TG  V  V  G     +  +   
Sbjct: 77  PIPEKERFASEPRVLALAPTRELAMQIAKDAEQLCQHTGHNVVTVVGGMNYDKQRDQLQN 136

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I+V TPGRL D +  + + +  L  ++LDEAD MLD+GF  D++ I+     K   
Sbjct: 137 EIVDILVATPGRLIDFLGSQDVFLDQLDILILDEADRMLDMGFIPDVKRIIRKCTPKEER 196

Query: 183 LM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
               FSAT +  +  LA  +  +A  V I  E +    ++    LV   ++   +VN L+
Sbjct: 197 QTLLFSATFNQDVLNLASMWTSNAEFVEIEPEQKTAERVEQTVYLVGDDEKLPVLVNFLK 256

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + A+VF + R       + L     +V  +SGE++Q +R   L   + G  +V +A
Sbjct: 257 RPEVEKALVFANRRDQCRDLEEDLRNQGVKVALMSGEIAQNKRLKTLDQFKKGSIQVLVA 316

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA RGI +  +  V +  L  N E+ +HR GRTGRAG+ G+S+    ++       + 
Sbjct: 317 TDVAGRGIHVNGVTHVFNYNLPDNAEDYVHRIGRTGRAGKHGVSISFAGEDDSFALPAIE 376

Query: 361 REANVSVV 368
              +  + 
Sbjct: 377 TYISQKLK 384


>gi|240172122|ref|ZP_04750781.1| putative ATP-dependent RNA helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 504

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/359 (34%), Positives = 177/359 (49%), Gaps = 8/359 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL E+G  +  ++QE  L   L  +DV+  A+TG GKT AFG+ L   + ++   
Sbjct: 19  DEIVRALREKGIEHPFAIQELTLPLALAGEDVIGQARTGMGKTFAFGVPLLQRITSDTAA 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERRDLQ 122
                 P AL + PTREL +QV  +L              + V    GG +   +   L+
Sbjct: 79  RPLTGTPRALVVVPTRELCLQVTDDLATAAKYLTAEETRRLSVVSIYGGRAYEPQVEALR 138

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P +R+ 
Sbjct: 139 AGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPAERQS 198

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R         H   +         D+   +  IL+
Sbjct: 199 MLFSATMPDPIITLARTFMVQPTHIRAEAPHSLAVHDTTEQFVYRAHALDKVELVSRILQ 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+ +  +    L E  F V A+ G+L Q  R  AL+  R G   V +A
Sbjct: 259 ARDRGATMIFTRTKRTAQKVADELKERGFAVGAVHGDLGQIAREKALKAFRGGDVNVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +   R   +
Sbjct: 319 TDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTLVDWDELDRWTTI 377


>gi|296169013|ref|ZP_06850678.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896310|gb|EFG75967.1| ATP-dependent RNA helicase DeaD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 443

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 126/373 (33%), Positives = 188/373 (50%), Gaps = 10/373 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N+     I  AL+E+G     ++QE  L   L   D++  A+TG GKT+AFG+ L +
Sbjct: 11  TFANLGVRDEIVRALAEKGIERPFAIQELTLPLALAGDDLIGQARTGMGKTLAFGVPLLN 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSV 114
            + A     +    P AL + PTREL +QV  +L              + V    GG   
Sbjct: 71  RITAGVGVRALNGTPRALVVVPTRELCLQVHGDLSDAAKYLKAEGDRPLSVVSIYGGRPY 130

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL 
Sbjct: 131 EPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSMLVLDEADEMLDLGFLPDIERILR 190

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P++R+ ++FSAT+   I T       Q   +R         H   +         D+ 
Sbjct: 191 QIPEERQSMLFSATMPGPIITLARTFMNQPTHIRAEAPHSAATHDTTEQFVYRAHALDKV 250

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R+
Sbjct: 251 EMVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQIAREKALKAFRN 310

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  + 
Sbjct: 311 GDIDVLVATDVAARGIDIDDITHVINYQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 370

Query: 353 QRRAERLFREANV 365
             R   + +   +
Sbjct: 371 LPRWSMIDKALGL 383


>gi|226366440|ref|YP_002784223.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244930|dbj|BAH55278.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 645

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 145/580 (25%), Positives = 230/580 (39%), Gaps = 47/580 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + +AL+       + +Q   +   L   +VL  AQTGSGKT+AFGL + + L    
Sbjct: 39  LPAPLVQALARNSITVPSPIQALSVPDALAGTNVLGRAQTGSGKTLAFGLPMLARLARHE 98

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 99  DRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAVGGTPFTKQVDQLRRGVD 157

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+FS
Sbjct: 158 ILVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLLFS 217

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + +L + +  D V+ +          +++  +LV    +DN  V          
Sbjct: 218 ATLDREVQSLVRQFLPDHVQHSTEDGRASVDTMEHYVLLVDRGQKDN--VLAEIGAREGR 275

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T  L        AL G  +Q +R+  L+  ++GR  V +ATDVAAR
Sbjct: 276 TIMFARTKLGCEGITDRLRAVGIAAEALHGGKAQNQRTRVLERFKNGRTPVLVATDVAAR 335

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R   RL   A V 
Sbjct: 336 GIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRTFRRLTGMAGVD 395

Query: 367 VVWEPA-PSVEAIRERDAQRI-----LQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
               P  P  E +      +      ++D        GD K        +        G 
Sbjct: 396 ATAVPVTPGSEKLASITGAKAPSGEPVRDTYSRGERGGDRKFGDRGPRREGGYAGRDGGG 455

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW---------FSL 471
            R +R       E +     SG   +   S   +   G     +G            +  
Sbjct: 456 YRGNRNDRGDRGERSYGDRPSGGRGYEGRSFEGRGNEGRGYEGRGPRRDQTDTRSGGYRG 515

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
               +                G           + + TF    +D               
Sbjct: 516 DRPQRDG----------DNRGGYRGD-------RDNRTF----SDRAPR----RDFGDSA 550

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
             +  G   P     +  G +  + +    + F R     
Sbjct: 551 PRRDFGDRAP----RRDYGDRGDSHRGSGERSFDRSAPRR 586


>gi|254480020|ref|ZP_05093268.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039582|gb|EEB80241.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 440

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/374 (29%), Positives = 186/374 (49%), Gaps = 4/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +   L    Y   T VQE ++   L   D+ VSA+TGSGKTVA+ L     +L  
Sbjct: 6   ELDRGLRLGLDALEYEKATEVQEQVIPAALEGTDLRVSAETGSGKTVAYLLPTLQRIL-- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +   +  +  LA+ + PTRELA QV +    L  KT +      GG     +R  L+   
Sbjct: 64  SAPINRKAGALAVVLVPTRELARQVQKNCRDLMQKTQLGAQAITGGADFKYQRALLRKNP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL +H      ++  L+ ++LDEAD MLD+GFRDD+  +      +R+++M 
Sbjct: 124 ELIIATPGRLLEHCEKGSADLGSLQTLILDEADRMLDMGFRDDVMKLASFCGAERQVIML 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHS--DIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+                +    SE RQ        R +  +   +D  +  ++   G
Sbjct: 184 SATLKHKGLGGVAKDLLRDPQTIEVSEFRQPHSSIHHQRILADSQEHKDKLLCALMDKGG 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF + R +  R   +L+ H  +   L GE+S +ER + +   RD +  +  A+DV
Sbjct: 244 FTRALVFANKRTTAQRLAGLLSHHGLRCGCLHGEMSTEERKHVMTQFRDSKVDMVCASDV 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D++LV++ +L    ++ LHR+GRTGRAG  G+++ ++          + R  
Sbjct: 304 AARGLDVKDIDLVVNYDLPQKGDDYLHRTGRTGRAGATGLAISLVSGLEWNLMVSIQRYL 363

Query: 364 NVSVVWEPAPSVEA 377
           N+       P ++A
Sbjct: 364 NLEFEKRSLPGLKA 377


>gi|149918583|ref|ZP_01907072.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
 gi|149820659|gb|EDM80071.1| DEAD/DEAH box helicase-like protein [Plesiocystis pacifica SIR-1]
          Length = 672

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 152/419 (36%), Positives = 223/419 (53%), Gaps = 8/419 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +P  + +A+ ERG+  LTSVQ+A+L+P+LR  ++ +S+ TGSGKT+A GLALA +LL
Sbjct: 19  FEGVPAPLAKAMRERGFTGLTSVQQAVLSPELRGHNLRISSATGSGKTMALGLALAESLL 78

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV-SVHRERRDLQ 122
            +  R      P AL I PTRELA QV  EL  LY+    V    + G   +  + R L 
Sbjct: 79  GDEAR--SRRGPTALVITPTRELASQVRGELASLYSMVRGVEVEVVTGGVDIRGDWRRLA 136

Query: 123 NGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
               ++V TPGRL DH+R       ++ S +  VVLDEAD+MLD+GFRD+++ I+   P+
Sbjct: 137 RRPRVLVATPGRLLDHMRNDSGERGVDCSDVSHVVLDEADQMLDMGFRDELDAIVAELPE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRDNAIVN 237
            R   + SAT    +  LA  +Q D  R    +               V + +R  A+VN
Sbjct: 197 SRTSHLVSATFPREVRRLADAFQGDEARTVQGTALGAPHQDIEVTCYSVDMGNRYPALVN 256

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     +  ++F   R         LA   F  +  SGELSQ +R+  L+  R G    
Sbjct: 257 LMLLASGRRTLIFVRRRIDTDTLASQLASDGFSALPFSGELSQAQRTRTLEAFRSGIVNT 316

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VIHA+L ++  N  HRSGRTGRAGRKG S  ++P+  + R  
Sbjct: 317 LVATDVAARGIDVADIATVIHADLPTDHANYTHRSGRTGRAGRKGASWLLVPRRAEGRIR 376

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           RL   A V   W   P+ + IR+   +R  ++   L + + + +       A+     +
Sbjct: 377 RLLSSAKVEPNWATPPTPKKIRKAVRKRTRRELNRLLTTELEAEGSDASPAAEGSAPAV 435



 Score = 65.0 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 52/204 (25%)

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR--------- 445
           ++   +      LL +HDP+ + A  L +    L             GR           
Sbjct: 485 NLAEADLAYAATLLERHDPQVLVATLLEMATPPLPREPMAIESKKSKGRRDRDRHDRDRD 544

Query: 446 ---------FRDDSRAFK--------------VGGGSRD----NFKGSSWFSLSVGSKQK 478
                    F    R  +               G G  D       G   F ++ G +  
Sbjct: 545 DRGPRRERRFDRQDRPERGGDRRRDDRGERRDKGRGRDDFDFAEQPGYRRFEINWGQRGG 604

Query: 479 AEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGG 538
           A    L+  LCR   I  +S+GA+R+    +  EV+ D  +   R               
Sbjct: 605 ATPGRLLAHLCRRGEITSRSVGAVRIGLRSSVFEVAVDVAETFARK-------------A 651

Query: 539 EKPDFRGYKSSGFKSKNSQDGATK 562
            KPD R  K    K + ++ G  +
Sbjct: 652 AKPDARDPK---LKIRPAKAGPPR 672


>gi|157125871|ref|XP_001654429.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108873494|gb|EAT37719.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 804

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/409 (26%), Positives = 205/409 (50%), Gaps = 8/409 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + +A+   GY+  T +Q A +   L  +D+   A TG+GKT A+ L     LL +
Sbjct: 187 NLSRPLMKAIGVLGYIYPTPIQAATIPIALLGRDICGCAATGTGKTAAYMLPTLERLLYK 246

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                  +    L + PTREL  QV +  + L   T + V + IGG+ V  +   L+   
Sbjct: 247 PSAAQAVT--RVLVLVPTRELGAQVYQVSKQLTQFTSIEVGIAIGGLDVKAQEAVLRTNP 304

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +V+ TPGRL DHI+     ++  ++ ++LDEAD MLD  F + ++ I+ S  K R+ ++
Sbjct: 305 DVVIATPGRLIDHIKNTPSFSLDSIEVLILDEADRMLDEYFAEQMKEIIQSCSKTRQTML 364

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++  +  LA       V+V + +      ++    + +       R+  +  ++  
Sbjct: 365 FSATMTDQVKDLAAVSLTKPVKVFVNNNQTVAFNLRQEFIRIREGREADREPLLAALICR 424

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               + +VF  T+ +  R   +L     +   L G+L+Q +R  +L+  +D +  V IAT
Sbjct: 425 TFHDHCMVFVQTKKTAHRLRILLGLLGVKSGELHGDLTQSQRLESLKQFKDEQVDVLIAT 484

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  ++ VI+  +    E+ +HR GRT RAG+ G+SV +  +  ++  + + +
Sbjct: 485 DVAARGLDISGVKTVINFVMPITMEHYIHRVGRTARAGKAGVSVSLAGELERKIVKDIIK 544

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            A   V     P+   I ++  +++L     ++ +  +E+    +L  +
Sbjct: 545 NAVSPVKNRIIPT--EIVDKYRKKVLALEEEIEKVLCEERAEKMLLQTE 591


>gi|167535963|ref|XP_001749654.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771802|gb|EDQ85463.1| predicted protein [Monosiga brevicollis MX1]
          Length = 400

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 11/374 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+ N + VQE  +   L  +D+L  A+ G+GKT A+ +     
Sbjct: 17  FEDFGLKRELLLGIFEKGFENPSPVQEECIPNALMRRDILARAKNGTGKTGAYLIPTLQL 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +          +   AL + PTRELA+Q     + L     + +    GG +   +   L
Sbjct: 77  VDPA------LACIQALILVPTRELALQTASIAKELGKHLNLEIMTTTGGTNTRDDILRL 130

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VV T GR+ D I      ++    +V DEAD++L     D ++ I+   P+KR+
Sbjct: 131 GQTVHVVVATGGRILDLIERGVAQMARCNILVFDEADKLLSEDSLDTVQKIISHLPEKRQ 190

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++ SAT   A+    K Y K+   +N+                +   D+   +  +   
Sbjct: 191 TMLLSATYPVAVQGFTKRYLKNPHVINLMETLTLKGV-TQFYAFLEEKDKVRCLNTLFGK 249

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FCS+ + V    K + +  +  + +   + Q  R+      R G++R  + T
Sbjct: 250 LQINQSIIFCSSHSRVELLAKKITKLGYSCLYIHSRMEQSHRNTVFDAFRKGKSRHLVCT 309

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+  RGID+  + +V++ +     E  LHR GR+GR G  G+++ ++    +    R+ R
Sbjct: 310 DLFTRGIDIQAVNVVVNFDFPREAETYLHRIGRSGRYGHLGLAINLVTAGNREALLRIER 369

Query: 362 EANVSVVWEPAPSV 375
           E   ++   P PSV
Sbjct: 370 ELGTAIA--PMPSV 381


>gi|145493178|ref|XP_001432585.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399698|emb|CAK65188.1| unnamed protein product [Paramecium tetraurelia]
          Length = 564

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 214/454 (47%), Gaps = 17/454 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + +A  ++GY + T+VQ  I+   +  KDVL S+ TGSGKT AF L +        
Sbjct: 123 LNKALVKACHDQGYTHPTNVQAKIIPIIMNGKDVLASSCTGSGKTAAFLLPIMQRF---- 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I PTRELA+Q     E L        A+ IG V + ++  +L+    
Sbjct: 179 GNLKNLQYSKALIILPTRELALQCFEMFEKLNKYANCTAALVIGAVPIQQQETELRKYPD 238

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGR  D       L I +++ +V DEAD ++++GF  +I  IL ++ K R+ ++ 
Sbjct: 239 IIIATPGRTVDLLTNSSSLEIQNIEILVFDEADRLMEMGFEKEIRQILQATSKDRQTVLI 298

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR---AVLVALSDRDNAIVNILRYH 242
           SAT++  +  L+     + ++VN+         +            SDR+  ++ +L+  
Sbjct: 299 SATLNATVKQLSLLALNNPIKVNVDFVGGLAYGLKQYLLRIRSNQDSDREATLITLLKTK 358

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  I+F  T+    R   VL         L G LSQQ+R  A +  ++G+ +  +ATD
Sbjct: 359 FKEKTIIFVKTKHDCHRLAIVLGFLDMSSCELHGNLSQQQRIQAYEDFKEGKFQFLLATD 418

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+DL D++ VI+ E+       +HR GRT R G +G+SV +  +N   + +++ R+
Sbjct: 419 LAARGLDLTDVKAVINYEIPYEVTRYIHRVGRTARIGAQGISVTICLENEVVKFKKMIRQ 478

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           +   +    A         D  ++ Q    +  ++   +K++   +A+ +  K      +
Sbjct: 479 SKQQLFKMIA---------DTNKVRQMRRQIQQLEPQIRKVIKEEVAEMEVRKTEMMTQK 529

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
                  + ++        G+ + ++  RA K  
Sbjct: 530 GEIPMEESEDDDNIPEPKKGKPQMKNKKRAKKFN 563


>gi|315604928|ref|ZP_07879985.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313364|gb|EFU61424.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 598

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 191/376 (50%), Gaps = 9/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ + 
Sbjct: 70  KSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVL 129

Query: 60  STLLAENDRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++A ++         + P AL I PTREL  QV ++L          +    GGV+  
Sbjct: 130 EDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLRDAAKYLSTRIVEIYGGVAFE 189

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L  GA IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L  
Sbjct: 190 PQIEALTRGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLGR 249

Query: 176 SPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P+ R  ++FSAT+   +         +       +   +N+  + +      V   ++ 
Sbjct: 250 VPENRHTMLFSATMPGPVVALARRFMVHPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKV 309

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++FC T+ + +R  + L    F V AL G+L Q  R  AL+  R 
Sbjct: 310 EVVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGALHGDLGQGAREQALRAFRK 369

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  + 
Sbjct: 370 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDD 429

Query: 353 QRRAERLFREANVSVV 368
             R   + +   + V 
Sbjct: 430 TPRWSLISKALGLGVP 445


>gi|229017434|ref|ZP_04174336.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
 gi|229023607|ref|ZP_04180100.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228737643|gb|EEL88146.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1272]
 gi|228743856|gb|EEL93956.1| ATP-dependent RNA helicase, DEAD/DEAH box [Bacillus cereus AH1273]
          Length = 389

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 185/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++        + ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAAQDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++ A    A++   +   V +     +        +        N  V  + + 
Sbjct: 175 VFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHM 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A+ F +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 233 GDVKAVAFLNDPFRLDEITQKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ DL  VIH EL    +  +HRSGRTGR G++G  V ++ +  +R+  +  ++
Sbjct: 293 IAARGIDIDDLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTEQEERKLLQFAKK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFTKQEM 362


>gi|170593039|ref|XP_001901272.1| DEAD [Brugia malayi]
 gi|158591339|gb|EDP29952.1| DEAD, putative [Brugia malayi]
          Length = 689

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/422 (29%), Positives = 202/422 (47%), Gaps = 32/422 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P  + +AL ++  +  T +Q   +   L  +D++  A TGSGKT+ F L L  
Sbjct: 252 MK----FPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLIM 307

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGG 111
             L +     F     P  L I P+RELA Q+   +E L+           + V +CIGG
Sbjct: 308 FCLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGG 367

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  + R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+GF ++I  
Sbjct: 368 LPISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRT 427

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I      +R+ L+FSAT+   I   A++    AV VN+        ++      V   ++
Sbjct: 428 IFSFFKGQRQTLLFSATMPRKIQNFARSALVRAVIVNVGRAGAASLNVIQEIEYVRADEK 487

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              I++ L+    +  ++F   ++ V    + L      V +L G   Q++R   +   R
Sbjct: 488 LTRILDCLQKTAPR-VLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFR 546

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GRKGM+   I   
Sbjct: 547 RGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFIN-- 604

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                    R A++SV       ++ +R    +   + PLFL  + G E +  +      
Sbjct: 605 ---------RRADISV-------LQDLRALLLEAGQELPLFLRDMGGPELEQPNDSANAD 648

Query: 412 DP 413
           D 
Sbjct: 649 DK 650


>gi|297807481|ref|XP_002871624.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297317461|gb|EFH47883.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 713

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/358 (28%), Positives = 172/358 (48%), Gaps = 7/358 (1%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   + +Q       ++ +D++  A+TGSGKT+ + +     L  +         P  
Sbjct: 247 AGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL--QRIHNDSRMGPTI 304

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q+  E       + +  A   GG     + ++++ G  IVV TPGRL D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +  + +++  +  +VLDEAD MLD+GF   I  I++  P KR+ LM++AT    +  +A
Sbjct: 365 ILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424

Query: 198 KN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
            +       V +    E   +  I     ++A  ++ + +  ILR     + I+   +  
Sbjct: 425 ADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTK 484

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
            +           F   A+ G+ SQ ER + L   R GR  V +ATDVAARG+D+ D+ +
Sbjct: 485 RMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRV 544

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE---ANVSVVWE 370
           V++ +  +  E+ +HR GRTGRAG  G++         + A  L +    AN  V  +
Sbjct: 545 VVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602


>gi|152975383|ref|YP_001374900.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024135|gb|ABS21905.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 389

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 186/370 (50%), Gaps = 8/370 (2%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           + +++   + +A  + G+   T +Q   +   L  +DV+  + TG+GKT+A+ L L   +
Sbjct: 1   MIKDMQPFLQQAWEKAGFKECTEIQAQAIPTILDGQDVIAESPTGTGKTLAYLLPLLHKI 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             E         P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+
Sbjct: 61  NPE------VKQPQVVILAPTRELVMQIHAEVQKFTAGTEISGASLIGGADIKRQVEKLK 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               ++VG+PGR+ + IR K L +  +K +V DE D+++     D I  ++ S+ + R++
Sbjct: 115 KHPKVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMIDTIFDVIKSTMRDRQL 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSAT++     +A+++      + +     +    ++  ++    +++  +  I+   
Sbjct: 175 VFFSATMTKEAEEVARDFAVQPQFICVKRAETKSLV-EHMYIVCERREKNEYVRRIMHTG 233

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A+ F +    +    + L     +  AL  E S+QER   ++  R G+  + +ATD
Sbjct: 234 QVK-AVAFLNDPYRLDEIAEKLKYRKMKAAALHAEASKQEREATMRAFRSGKLEILLATD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ DL  VIH EL    +  +HRSGRTGR G++G  + ++    +R+  +   +
Sbjct: 293 VAARGLDINDLTHVIHLELPDTLDQYIHRSGRTGRMGKEGTVISLVTPQEERKLLQFANK 352

Query: 363 ANVSVVWEPA 372
             +    +  
Sbjct: 353 LGIVFKKQEI 362


>gi|156103037|ref|XP_001617211.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148806085|gb|EDL47484.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 923

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 101/406 (24%), Positives = 181/406 (44%), Gaps = 42/406 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +++   + +  Y   T +Q+  L+  + + D++  AQTGSGKT  + L + + +L  
Sbjct: 346 NLHEILLSNIKKVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPIINHMLLN 405

Query: 66  NDR---------------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           +                 ++    P+ L +APTRELAVQ+  + +    +TG+   V  G
Sbjct: 406 DPPKHTFYEENQKSSSYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKPVVLYG 465

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G ++  +  +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I 
Sbjct: 466 GSNIKTQLSNLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIR 525

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--------------- 215
            I+                +        N       +  ++  R+               
Sbjct: 526 SIMYDYDMPGNENDSRMNPNKMEYKRYTNDVVKRQTIMFSATFRKEIQVLAKEYLFNYTF 585

Query: 216 ---------HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
                    +  I    + +   ++ N ++ +L  +     I+F  T+       + L  
Sbjct: 586 LLVGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADIIERFLNN 645

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
                V + G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN +
Sbjct: 646 QKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINFDLPSNID 705

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           + +HR GRTGRAG  G++   +  + +   + L     E N ++  
Sbjct: 706 DYIHRIGRTGRAGNIGIATSFVNDDNRNIFKDLLATLEECNQAIPR 751


>gi|149236686|ref|XP_001524220.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013482|sp|A5E3K3|DBP4_LODEL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|146451755|gb|EDK46011.1| hypothetical protein LELG_04190 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 775

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/423 (24%), Positives = 193/423 (45%), Gaps = 11/423 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  Q     L E  +V+LT +Q+  +   L+ +D++ +A+TGSGKT+AF + +
Sbjct: 47  IKHFSDLPITQNTLRGLKECSFVSLTDIQKKSIPVALKGEDLMGTARTGSGKTLAFLIPV 106

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL   +  +      AL ++PTRELAVQ+   L  +         +  GG  V  E+
Sbjct: 107 IEILL--RNDITEYDGLAALIVSPTRELAVQIFEVLAKIGKYNSFSAGLVTGGKDVQYEK 164

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G+  S+L+ +VLDEAD  LD+GFR  I+ IL+  P+
Sbjct: 165 ERISRMNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFRKQIDNILNHLPR 224

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
            R+ L+FSAT + ++  LA+    +  R+  +S+    +     D   V V L+++ + +
Sbjct: 225 TRQTLLFSATHTDSVQDLARLSLTNPKRIGTSSDQDISAIPESLDQYYVKVPLNEKLDVL 284

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     +VF S+   V    +        +  +      ++ S           
Sbjct: 285 WSFIKSHLKSKILVFFSSSKQVQYAYETFRTLQPGIPLMKLYGRHKQTSRLETTVKFSQA 344

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNM 352
           +     ATD+ ARG+D P ++ VI  +   +    +HR GR+ R GR+G S+  ++P   
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEE 404

Query: 353 QRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               +R+   +    ++     S ++IR +      +DP+  +  Q         +  + 
Sbjct: 405 DGMLKRMKVHKIEPKMMNIKEKSKKSIRPQLQSLCFKDPVIKNLGQRAFIAYFRSVYIQK 464

Query: 412 DPE 414
           D +
Sbjct: 465 DKD 467


>gi|205352662|ref|YP_002226463.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272443|emb|CAR37330.1| ATP-independent RNA helicase (DbpA) [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326627728|gb|EGE34071.1| ATP-dependent RNA helicase DbpA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 457

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 134/409 (32%), Positives = 202/409 (49%), Gaps = 17/409 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+ +T VQ A L   L   DV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              AL + PTRELA QV  EL  L         + + G      
Sbjct: 61  LLHRIDVT------LFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++ + +++  L  +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q+  +R+ I + +   +         A   + + + 
Sbjct: 175 PATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALLAIEQQFFETSAHE-KISLLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       +AL G+L Q++R   L    +G AR
Sbjct: 234 TLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSAR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+D+  LEL+++ EL+ +PE  +HR GRT RAG  G+++        +RA
Sbjct: 294 ILVATDVAARGLDIKSLELLVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             L     + + W  AP+      R     L   +    I G +K  + 
Sbjct: 354 NILSEMLQLKLNWLNAPA------RQPSLPLAAEMATLCIDGGKKAKMR 396



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + +         S    
Sbjct: 320 WDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLA 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQVVAQKAWK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|302810291|ref|XP_002986837.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
 gi|300145491|gb|EFJ12167.1| hypothetical protein SELMODRAFT_124676 [Selaginella moellendorffii]
          Length = 415

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/402 (24%), Positives = 189/402 (47%), Gaps = 19/402 (4%)

Query: 1   MKIFENIP------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ F+ +         + + L E GY   T VQ  ++   L+E++  V A TGSGK++AF
Sbjct: 18  LRSFQQLSSEYDCEPNLIKNLVEAGYKEPTPVQRQVIPVLLQERECFVCAPTGSGKSLAF 77

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L +   L     + S      A+ + PTRELA Q+  E   L   + +   +    +  
Sbjct: 78  ILPILMKL-----KKSSPDGIRAVILCPTRELAAQLITECRRLANGSKIRARLLTKRLFK 132

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           + +   L     I+V TP RL   ++ + +++  ++  +LDE+D++ +LGF   I+ I+ 
Sbjct: 133 NPDFASL--RCDILVSTPLRLDKLVKSEKIDLKRVEYFILDESDKLFELGFMQQIDSIVS 190

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RD 232
             +       +FSAT+   +  LA+    DA+R+ I   N     +  + +     + + 
Sbjct: 191 ACTRTNIVRALFSATLPETVEELARTIMHDAIRIVIGDRNSASETVQQKLMYAGNEEGKL 250

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+    +   +   I+F   +    +  K L     +V ++  + +Q +R  A+   R 
Sbjct: 251 LALKQFFKEGLSPPIILFVQCKERAKQLHKALLSEKLRVDSIHADRTQTQREIAVLNFRT 310

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + IATD+ ARG+D   +  VI+ ++  +    +HR GR+GRAGR G ++ +  +  
Sbjct: 311 GKTWILIATDLMARGMDFKGVNWVINYDVPQDTTVYIHRIGRSGRAGRPGNALTLYAEED 370

Query: 353 ---QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
               R    + + +   V  E   S+  IR+R+ +RI + P+
Sbjct: 371 VPLLRSIANVMKASGCDVP-EWMLSLPKIRKRNQKRIRRQPV 411


>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
          Length = 705

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 170/378 (44%), Gaps = 14/378 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P+ I   + +  Y   T VQ+  +     ++D++  AQTGSGKT AF L + S +  +
Sbjct: 251 NLPETICANVKKAKYSRPTPVQKYSIPIINADRDLMSCAQTGSGKTAAFLLPVLSGMFRK 310

Query: 66  N---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               D  S    P A+ + PTREL +Q+  E       + +   V  GG SV  + RDL 
Sbjct: 311 GLKSDTLSEKQTPQAIVVGPTRELVLQIFLEARKFAYGSVIRPVVAYGGTSVGSQLRDLC 370

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G +I++ TPGRL D I    ++   ++ ++LDEAD MLD+GF  +I  +L S     + 
Sbjct: 371 RGCNILIATPGRLLDFINRGKVSCECVEYLILDEADRMLDMGFEPEIRRLLGSPGMPDKN 430

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDRDN--AI 235
              +   S       +    + +R +             SD+    + V   D+      
Sbjct: 431 SRHTLMFSATFPNEIQKLAHEFLRDDFLFLSVGRVGGACSDVTQTILQVDEEDKRETLMQ 490

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +           +VF  T+         L++      ++ G+  Q+ER  AL   + G  
Sbjct: 491 LLSDVAETRSRTLVFVETKRKADFLAAFLSQENLPTTSIHGDRYQREREMALADFKSGTC 550

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---- 351
            + IAT VAARG+D+P +E VI+ +L +  +  +HR GRTGR G  G +      N    
Sbjct: 551 PIMIATSVAARGLDIPKVEHVINFDLPNEIDEFVHRVGRTGRCGNLGQATSFYSDNKDGM 610

Query: 352 MQRRAERLFREANVSVVW 369
           + R   ++  +A   V  
Sbjct: 611 LARSLVKVLADAQQEVPE 628


>gi|164655062|ref|XP_001728662.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
 gi|159102545|gb|EDP41448.1| hypothetical protein MGL_4141 [Malassezia globosa CBS 7966]
          Length = 623

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 120/370 (32%), Positives = 192/370 (51%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  I +A+   GY   TS+Q   +   L  +D++  A+TGSGKT +F + + + ++A+ 
Sbjct: 234 IPGAILDAIEAMGYREPTSIQRQAIPIGLIPRDLIGLAETGSGKTASFVVPMLAYVMAQ- 292

Query: 67  DRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            R +P      P  L +APTRELA+Q+  E     A+  + V   +GG  +  +   L +
Sbjct: 293 PRMAPGDVYMGPYGLILAPTRELALQIEAETRKFAARLQIQVVSLVGGRDLGEQAFHLND 352

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA IV+ TPGRL D +    L +     +V+DEAD M+D+ + + + +ILDS P  R  +
Sbjct: 353 GAEIVIATPGRLQDCLERHMLVLGQCHYLVMDEADRMVDMNYEEALHYILDSLPTTRTTM 412

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYH 242
           ++SAT+ P +  +A+ Y    V V I    +    I+     + +  DR   ++++L   
Sbjct: 413 LYSATMPPTVDKIARTYLTRPVTVTIGQAGQAVGTIEQCVEFVDSEEDRQQRLLHVLDSG 472

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A   IVF + +A+     K L    + V  L   LSQ +R  A+  +RDG   V   TD
Sbjct: 473 FAPPMIVFVNQKANADLVGKDLRRAGWNVAVLHSGLSQPQREAAIASLRDGYNEVLCCTD 532

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-FR 361
           + ARGIDLPD+ LV++ +  +   + +HR GRTGRAG+KG ++  +  +  +    L   
Sbjct: 533 IGARGIDLPDVSLVVNYQFPTQFASYIHRIGRTGRAGKKGHAMSFVNDDDAQHFYALRLE 592

Query: 362 EANVSVVWEP 371
            A   V   P
Sbjct: 593 LAKSPVSSVP 602


>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
 gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
          Length = 460

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 189/374 (50%), Gaps = 5/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  ++   G+   T VQEA +   L   D++ ++QTGSGKT+A+GL +   +L + 
Sbjct: 8   IDPRLISSIEHLGFEQATEVQEAAIPLILGGCDIMATSQTGSGKTIAYGLPILQRMLKQ- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     A  A+ +APTRELA+QV   ++ L       + + IG  S   + + L+    
Sbjct: 67  -RRFEHRAVRAVILAPTRELAIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRKNPE 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSSPKKRRML 183
           +++ TPGRL DHIR K +++ HL+ +VLDEAD MLD+GFRDD   I     +  ++  + 
Sbjct: 126 VLIATPGRLLDHIREKSISLEHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLF 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +           +  +         S ++             L+ ++  +V++++   
Sbjct: 186 SATLEHVDVANICNQVLRAPERIEINRSNDQHEKIEQRLFFSDNLTHKEEQLVHLVKSED 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  ++F +T+    R  K+L ++     ++ G++ Q +R   L+  R GR  V +ATDV
Sbjct: 246 YRQLLIFTATKLDTERLAKLLMDNDIDATSIHGDMLQNQRKRTLEDFRRGRVGVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+  L  VI+ +L  NPE+ +HR+GRTGRAG  G+++ ++         ++    
Sbjct: 306 AARGLDIRTLSHVINFDLPINPEDFIHRTGRTGRAGATGIAISLVSPKDWTSFGKIQSYL 365

Query: 364 NVSVVWEPAPSVEA 377
            V +        EA
Sbjct: 366 KVKLPCTMLEGFEA 379


>gi|125601387|gb|EAZ40963.1| hypothetical protein OsJ_25445 [Oryza sativa Japonica Group]
          Length = 414

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 117/371 (31%), Positives = 195/371 (52%), Gaps = 13/371 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q  ++   L+ +DV+   QTGSGKT AF L +   LL    R        A
Sbjct: 1   MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRP----CFFA 56

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
             +APTRELA+Q+ ++ E L +   +  +V IGG+    +   L    H+VVGTPGRL D
Sbjct: 57  CVLAPTRELAIQIAKQFEALGSAISLQCSVLIGGIPRTSQTISLAKRPHVVVGTPGRLLD 116

Query: 138 HIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           H+      + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSAT++  +  L
Sbjct: 117 HLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSATMTEKVKKL 176

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +   K+ V+V +AS+      +     +V    +D  ++++L        +VF  T  S
Sbjct: 177 RRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMIMVFVRTCES 236

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                 +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG+D+  +++V
Sbjct: 237 TRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRGLDIQGVDVV 296

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +   N ++ +HR GRT RAG+ G +V ++ Q         F+     +  E  P+  
Sbjct: 297 INYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFE----GEFFKLTEQFLGGEEIPA-- 350

Query: 377 AIRERDAQRIL 387
             R+ DA  I+
Sbjct: 351 --RKVDADEIM 359


>gi|327394851|dbj|BAK12273.1| ATP-dependent RNA helicase SrmB [Pantoea ananatis AJ13355]
          Length = 442

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/367 (30%), Positives = 183/367 (49%), Gaps = 4/367 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL E+GY   T++Q A + P L  +DVL SA TG+GKT A+ L +   LL    + S   
Sbjct: 18  ALQEKGYTRPTAIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPVLQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV  +   L   T + +A   GGV+             +VV T G
Sbjct: 76  PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAFMNHAEVFSENQDVVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT+    
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGEH 195

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL--SDRDNAIVNILRYHGAKNAIVFC 251
                    +      A  +R+      +    A     +   +V++L+      +IVF 
Sbjct: 196 IKDFAERLLNEPVELEADPSRRERKKIQQWYHRADDLEHKTKLLVHLLKQPEVTRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  +      L +   +   L GE+ Q +R+ A++ + +GR  V +ATD+AARGID+ 
Sbjct: 256 RKRERLHELVSWLHDAGIRTSYLEGEMVQAKRNEAIKRLVEGRVNVLVATDIAARGIDVD 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           D+  VI+ ++    +  LHR GRTGRAGRKG+++ ++  +      ++ R  +  +    
Sbjct: 316 DVSHVINFDMPRTADTYLHRIGRTGRAGRKGIAISLVEAHDHLLLGKVSRYVDEPIKARV 375

Query: 372 APSVEAI 378
              +  +
Sbjct: 376 IDELRPV 382


>gi|300214777|gb|ADJ79193.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 440

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/395 (27%), Positives = 188/395 (47%), Gaps = 10/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
            D         A+   P+RELA Q+    + L   +     +     G     +  +   
Sbjct: 68  KDEV------QAVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   V     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++ +   + ++  + L   
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELE-S 360

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             V  V +   + E +   D  R  +     +S+ 
Sbjct: 361 MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMD 395


>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 452

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 121/374 (32%), Positives = 183/374 (48%), Gaps = 5/374 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I + L++RG     ++QE  L   L  +D++  A+TG GKT  FG+ L  
Sbjct: 10  TFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLD 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + D   P   P AL + PTRELA QV  +L+   A   V +A   GG     + + 
Sbjct: 70  RVFDDADIAPPDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLAAIYGGRPYEEQIKL 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  +V+GTPGRL D      L + H+  VVLDEADEMLDLGF   IE IL++     
Sbjct: 130 LQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNA 189

Query: 181 RMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              M    +   +    +    ++   +R    ++   H             D+   I +
Sbjct: 190 HQTMLFSATMPGAILNLSRQFMHKPVHIRAESEADEVTHETTRKVTFQAHRMDKVAVIAH 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G   +I+F  T+ S ++    LAE  F V A+ G+L Q+ R  +LQ  R G   +
Sbjct: 250 ILQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++  +   +  
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWR 369

Query: 358 RLFREANVSVVWEP 371
            +  E  +     P
Sbjct: 370 VINDELGLDTATPP 383


>gi|145349792|ref|XP_001419312.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579543|gb|ABO97605.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 481

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/407 (25%), Positives = 175/407 (42%), Gaps = 14/407 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++P  Q    AL E  +  +T++Q A L   L  +DVL +A+TGSGKT+A+ + L
Sbjct: 1   MRKFAHLPISQATKAALRECKFKEMTAIQRATLPHALCGRDVLGAAKTGSGKTLAYVVPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L     ++       AL I+PTRELA+Q+ + L  + A+  +   + IGG  V  E 
Sbjct: 61  IESLW--RKKWGRQDGVGALVISPTRELAIQIFQCLTKVGARHTMSAGLLIGGKDVQEEA 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V      L         +   L+ +VLDEAD MLDLGF   +  I+D+ PK
Sbjct: 119 NRVNKMNILVCTPGRLLQHMDETPMFDCVTLQMLVLDEADRMLDLGFTKTLNAIIDNLPK 178

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT + ++           + + V+  S +     +       AL  +   + 
Sbjct: 179 NRQTLLFSATQTKSVKDLARLGLKDPEYLSVHAESVHSTPPKLQQMVTTCALEKKIEVLW 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR-- 294
           + ++ H     +VF S+   V    ++       V         ++              
Sbjct: 239 SFIKTHLNAKTLVFFSSCKQVKFVYEIFKRMRPGVPLQCIHGRLKQARRQGVFYNFCNAK 298

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATDVA+RG+D P ++ V+ A+   +    +HR GRT R    G  + ++      
Sbjct: 299 ETVLFATDVASRGLDFPSVDWVVQADCPEDVATYIHRVGRTARYTAAGKGLLMLTPGESH 358

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
             + L       V   P   ++   ++ + RI      L S   D K
Sbjct: 359 FMKELE------VAKVPLKPIKLNPKKQSSRIQSSMQGLLSKDSDLK 399


>gi|300172973|ref|YP_003772139.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887352|emb|CBL91320.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 454

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 180/385 (46%), Gaps = 12/385 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL++ G+   T VQ  ++   L+  DV+  +QTGSGKT  F + + + L   
Sbjct: 12  NLKPEIIVALTKIGFTQPTPVQAKLIPSILQGNDVVGQSQTGSGKTHTFLIPILNQLSQN 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVHRERRDLQ 122
                      A+   P+RELA Q+ +  +         V +     G   + + ++  +
Sbjct: 72  EQYV------QAVITTPSRELAAQITKAAKDFAESWQQNVTISEFVGGTDKMRQIKQLEK 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D +    L +  +  +V+DEAD  LD+GF  +++FI  + P K + 
Sbjct: 126 GQPQIVIGTPGRIKDLVSTGALKLHAVHTLVVDEADMTLDMGFLSEVDFIAGAMPDKLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     +R++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPKFEAIPVSTVIADTIDNWLLATKSKNRNDVIYQVLSIG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+         L     +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKERAKEIASNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEFQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++    E  +HR GRTGR G  G+++ +   + ++    L   
Sbjct: 306 LAARGIDIEGVSHVINDDIPDELEFFVHRVGRTGRNGLAGLAITLYGPDEEQEVAELE-A 364

Query: 363 ANVSVVWEPAPSVE--AIRERDAQR 385
             ++   +     E   +++R A++
Sbjct: 365 LGINFKAKQIKDGEIVDVKDRRARK 389


>gi|189205421|ref|XP_001939045.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187975138|gb|EDU41764.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 690

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/406 (26%), Positives = 181/406 (44%), Gaps = 27/406 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  +   + + GY   T +Q A +   L+ +D++  A+TGSGKT AF L L + +  L 
Sbjct: 276 LPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLAYISQLP 335

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +APTRELA Q+  E        G   AV +GG S+  +   +++G
Sbjct: 336 PLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRDG 395

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  IL + P       
Sbjct: 396 AEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVNNEKPD 455

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------------YRAV 224
                           Q       +     + +                        R  
Sbjct: 456 TEEAEDADAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDTVEQRVE 515

Query: 225 LVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            +   ++    +  +      A   IVF + + +     + +    F    + G  +Q++
Sbjct: 516 FIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQ 575

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL  ++ G+  V +ATD+A RGID+PD+ LV++  + S+ E   HR GRTGR  +KG
Sbjct: 576 REAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRTGRQDKKG 635

Query: 343 MSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
            ++              +++  ++N+S V E     EA +++  +R
Sbjct: 636 TAITFWGNEDADVLYDLKQILTKSNLSKVPEDLRKHEAAQQKGKKR 681


>gi|322796322|gb|EFZ18887.1| hypothetical protein SINV_00745 [Solenopsis invicta]
          Length = 420

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 109/410 (26%), Positives = 184/410 (44%), Gaps = 15/410 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +       G    T +QE  +   L  +D +  A+TGSGKT+AF L +   L  + 
Sbjct: 13  LNSWLLAQCKSMGLKKPTPIQENCIPRILMGEDCIGCAKTGSGKTLAFALPILQKLCEDP 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +   +     +   V +GG+ +  +  +L    H
Sbjct: 73  ------YGIFALVLTPTRELAFQIADQFAAIGKVINLKKCVIVGGMDMMIQGLELSKRPH 126

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV TPGRL DH+      ++  +K +VLDEAD +L   F   ++ I    PK++++L F
Sbjct: 127 IVVATPGRLADHLDSCNTFSLQKIKFLVLDEADRLLGGHFDKQLKKIFAVLPKQKQILFF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV----NIL 239
           SAT++  +  + K             +       ++D R VL      D+ +V       
Sbjct: 187 SATMTDTLDKVKKMACNKVFTWQEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIRTFR 246

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     ++F  T  +    +  L +  F  VAL   L Q+ER  AL   +    ++ I
Sbjct: 247 TTNKNGCIMIFTDTCKNCQLLSMTLNDVGFTNVALHAMLKQKERLVALNKFKSNHIQILI 306

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT+VAARG+D+P ++LV++  + + P+  +HR GRT RAG  GM++ +I  +  +    +
Sbjct: 307 ATNVAARGLDIPAVQLVVNHVIPNVPKEYIHRVGRTARAGENGMAISLITPHDIKLLHAI 366

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVL 407
                  +        E +       +   +  + LD     EKKM++  
Sbjct: 367 EDAIGTKLTEYKVDDKEIVTILTQISVAKREAEIKLDETDFYEKKMINKQ 416


>gi|152013501|sp|A4RHF1|DED1_MAGO7 RecName: Full=ATP-dependent RNA helicase DED1
          Length = 671

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 190/391 (48%), Gaps = 24/391 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 188 TFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLMACAQTGSGKTGGFLFPILS 247

Query: 61  TLLAENDRFSPAS-------------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
                     PA+              P +L +APTREL  Q+  E      ++ V   V
Sbjct: 248 QAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCV 307

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG  +  + R ++ G  ++V TPGRL D I    +++ ++K +VLDEAD MLD+GF  
Sbjct: 308 VYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEP 367

Query: 168 DIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I       + + R+ LMFSAT    I  LA+++ KD + +++        +I  R 
Sbjct: 368 QIRRIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRV 427

Query: 224 V-LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
           + +    D+ + ++++L  HG    ++F  T+ +    +  L        ++ G+ +Q+E
Sbjct: 428 MEVKHRDDKISHLLDLLSTHGGGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRE 487

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+M R GR  + +AT VAARG+D+P++  VI+ +L ++ ++ +HR GRTGRAG  G
Sbjct: 488 RERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTG 547

Query: 343 MSVFVIPQNMQ----RRAERLFREANVSVVW 369
           ++             +    + +EA   +  
Sbjct: 548 IATAFFDMKDNSGVAQELLNILKEAKQDIPP 578


>gi|107103380|ref|ZP_01367298.1| hypothetical protein PaerPA_01004450 [Pseudomonas aeruginosa PACS2]
          Length = 523

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 201 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 260

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 261 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 320

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 321 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 380

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 381 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 441 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 500

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 501 LLGRKITCEMPPA 513


>gi|32352202|dbj|BAC78594.1| RNA helicase [Oryza sativa Japonica Group]
          Length = 408

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 113/376 (30%), Positives = 187/376 (49%), Gaps = 9/376 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-NDRFSPASAPL 76
           +G+   + +Q       L  +D +  A TGSGKT+AFG+     +  +  ++ +    P 
Sbjct: 6   KGFERPSPIQAYAWPYLLDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPR 65

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L ++PTRELA Q+   L    A  G+      GG S   +   L++G  IV+GTPGR+ 
Sbjct: 66  VLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMK 125

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+ +MFSAT  PA+  L
Sbjct: 126 DLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQL 185

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-----VNILRYHGAKNAIVFC 251
           A+ +        +       ++ D   ++  L DR         ++          +VF 
Sbjct: 186 AQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFV 245

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +   +R   +L    +  V++ G+ +Q +R+ AL + ++G   + IATDVA+RG+D+P
Sbjct: 246 LYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEGSCPLMIATDVASRGLDIP 305

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVV 368
           D+E+VI+       E+ +HR GRTGRAG+KG++     Q  +  A  L    REA   V 
Sbjct: 306 DVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQENKGLAGELVNVLREAGQVVP 365

Query: 369 WEPAPSVEAIRERDAQ 384
                    ++++++Q
Sbjct: 366 PALTKFGTHVKKKESQ 381


>gi|256786770|ref|ZP_05525201.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289770661|ref|ZP_06530039.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289700860|gb|EFD68289.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 528

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 193/383 (50%), Gaps = 7/383 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++P  +  AL ++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 54  VETFAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 113

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       + +    PLAL + PTRELA QV   L       G+  A  +GG+S+ R+ 
Sbjct: 114 LAR---TAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQA 170

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 171 GALRSGAEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAA 230

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y  D V  ++       + +++  + V   D+  A +  
Sbjct: 231 DGQRMLFSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATIE- 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V R  K L +   +   L G  SQ +R+  L   +DG+    
Sbjct: 290 -IAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTAL 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 349 VATNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTR 408

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L   A ++    P  S EA   R
Sbjct: 409 LMSLAGITPQVTPVRSGEAELAR 431


>gi|242803584|ref|XP_002484204.1| DEAD box  RNA helicase (Hca4), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218717549|gb|EED16970.1| DEAD box RNA helicase (Hca4), putative [Talaromyces stipitatus ATCC
           10500]
          Length = 817

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/400 (24%), Positives = 189/400 (47%), Gaps = 10/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +P        L+   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 48  LESFSELPLSDPTSSGLTASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLVPV 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      A+ ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LENLY--RKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +   L++ +L+ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQQTVDAIIEHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
            R+ ++FSAT +  ++ LA+   +D   V +     +   S +    ++  L ++ + + 
Sbjct: 226 TRQTMLFSATQTKKVSDLARLSLQDPEYVAVHETAASATPSTLQQHYIITPLPEKLDTLY 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     IVF S+   V    + L      +  L     Q++             +
Sbjct: 286 SFIRSNLKSKTIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFAQSK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P   +
Sbjct: 346 HAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEE 405

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
              +RL  ++  +  +   A   ++I+++      +DP  
Sbjct: 406 GMLKRLEQKKVPIERINVKAKKQQSIKDQLQNMCFKDPEL 445


>gi|124268102|ref|YP_001022106.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
 gi|124260877|gb|ABM95871.1| putative ATP-dependent RNA helicase [Methylibium petroleiphilum
           PM1]
          Length = 516

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 193/399 (48%), Gaps = 21/399 (5%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     +  A+++ G+   TSVQE  +   L+  D +VS+QTGSGKT AF L +   
Sbjct: 76  FESLGLAAPLLHAVTQLGFTAPTSVQEQAIPAALKGGDWMVSSQTGSGKTAAFLLPVLHR 135

Query: 62  LLAEND-RFSPASAPLALAIAPTRELAVQV-----------GRELEWLYAKTGVVVAVCI 109
           LL       +  + P A+ + PTRELA QV           G  L     +  +  A   
Sbjct: 136 LLNAGAAEQTRVATPRAVVLCPTRELAQQVSADAIDLMRGVGEALRAEAKQHPLRDAARG 195

Query: 110 GGV------SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
             +          ++     GA +VV TPGRL D      + +   + +V+DEAD MLDL
Sbjct: 196 LRIATVVGGMPFGKQLFDLRGAQLVVATPGRLLDLHSRGQIRLDATQVLVVDEADRMLDL 255

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF +D+  I D++ ++ + +MFSAT +P I  LA    +   R+ +A+ +  HSDI    
Sbjct: 256 GFAEDLAAIADATAQRDQTMMFSATFAPRIMALASKLMRSPGRLELATAHDVHSDITQTL 315

Query: 224 VL-VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
                +  +   + + LR      A+VF ST+       + L +     VAL G + Q  
Sbjct: 316 HWADNMGHKQALLEHWLRDAEVDQAVVFASTQVDTEAIAEALQQQGHSAVALHGAMPQAV 375

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+  LQ +RDG  RV +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGRAGR G
Sbjct: 376 RNRRLQNVRDGHVRVLVATDVAARGLDVPSISHVINFGLPMKAEDYVHRIGRTGRAGRSG 435

Query: 343 MSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
            ++ +     + +   +       +       +E   +R
Sbjct: 436 TAITIAEHRERGKIRAIEAFTRQPIEASVIVGLEPTPQR 474


>gi|116333834|ref|YP_795361.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099181|gb|ABJ64330.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
          Length = 452

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/400 (25%), Positives = 184/400 (46%), Gaps = 12/400 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N+   +  AL + G+   T+VQE ++       DV+  +QTGSGKT  F L + +
Sbjct: 5   FKNF-NLQPYLMTALQKIGFQQPTAVQEKLIPVISAGHDVVGQSQTGSGKTHTFLLPIFN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVHRE 117
            L +EN          A+   P+RELA Q+    E L A+      +     G     + 
Sbjct: 64  QLTSENQ-------VQAVITTPSRELAYQIRTAAEQLAAEAPFEIRIGNYVGGTDKQRQI 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +       +V+GTPGR+ D I+ + L++   +  V+DEAD  LDLGF D ++ I    P
Sbjct: 117 EKLRHYQPQLVIGTPGRVQDLIQSQALDVHTTRQFVVDEADMTLDLGFLDQVDKIAGRMP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  +M++FSATI   +    + Y    V   I +     S ID   +     +++  I  
Sbjct: 177 KNLQMMVFSATIPQRLDPFLRKYMNHPVVEEIPTATVISSTIDNWLISTKGQNKNQLIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++        ++F +T+  V +    L     +V  + G +  +ER   ++ +++ + + 
Sbjct: 237 LITMGEPYLVLIFANTKTRVEQIHDFLQSQGLKVAMIHGGIKPRERKRVMREVKNLQFQF 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ ++  + +  +HR GRTGR G  G ++ +   + + +  
Sbjct: 297 VVATDLAARGIDIEGVSHVINDDIPEDLDFFVHRVGRTGRQGMPGTAITLYSPDEEAKIA 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            +     +    +   + E +   D  R  +     + + 
Sbjct: 357 EIE-AMGIKFQPKRISNGEIVDSYDRNRRQKRVKSTEKLD 395


>gi|21222144|ref|NP_627923.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7210999|emb|CAB76979.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 528

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/383 (32%), Positives = 193/383 (50%), Gaps = 7/383 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++P  +  AL ++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 54  VETFAELDLPARMLAALGDQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 113

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       + +    PLAL + PTRELA QV   L       G+  A  +GG+S+ R+ 
Sbjct: 114 LAR---TAGKRAEPRRPLALVLVPTRELAQQVTDALTPYARAVGLRSATVVGGMSIGRQA 170

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 171 GALRSGAEVVVATPGRLKDLIDRGDCALGDVTITVLDEADQMTDMGFMPQVTALLDQVAA 230

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y  D V  ++       + +++  + V   D+  A +  
Sbjct: 231 DGQRMLFSATLDRNVDKLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQDEDKQRATIE- 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V R  K L +   +   L G  SQ +R+  L   +DG+    
Sbjct: 290 -IAARDGRVIMFLDTKHRVDRLVKHLLKSGVRAAGLHGGKSQPQRTRTLAQFKDGQVTAL 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 349 VATNVAARGIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGSVVTLVTPDQRREMTR 408

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L   A ++    P  S EA   R
Sbjct: 409 LMSLAGITPQVTPVRSGEAELAR 431


>gi|259506519|ref|ZP_05749421.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
 gi|259165939|gb|EEW50493.1| ATP-dependent RNA helicase DeaD [Corynebacterium efficiens YS-314]
          Length = 424

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 181/373 (48%), Gaps = 4/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I +AL   G  +  ++QE  L   L   D++  A+TG GKT  FG+ L  
Sbjct: 9   TFTELGVAAEITDALDALGIRHTFAIQEYTLPIALDGHDLIGQARTGMGKTYGFGVPLLD 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +    D       P AL I PTRELAVQVG +LE       + V    GG     +   
Sbjct: 69  RVFDSADIEEIDGTPRALVIVPTRELAVQVGEDLERAAVNLPLKVFTFYGGTPYEEQIDA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE I+ +   K 
Sbjct: 129 LETGVDVVVGTPGRLLDLYQRGALRLDKVAILVLDEADEMLDLGFLPDIEKIMRALTHKH 188

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I T   +   +   +R   A     H+            D++     I
Sbjct: 189 QTMLFSATMPGPILTLARSFLDKPVHIRAESADSAATHATTRQIVFQAHRMDKEAVTARI 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    I+F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + 
Sbjct: 249 LQARGRGKTIIFARTKRTAAQVAEDLAARGFTVGSVHGDMGQPARERSLNAFRSGKIDIL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++  +   +   
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDPMTYVHRIGRTGRAGHTGTAVTLVGYDELLKWTA 368

Query: 359 LFREANVSVVWEP 371
           +  E  +     P
Sbjct: 369 INNELELGQPNPP 381


>gi|302505192|ref|XP_003014817.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
 gi|291178123|gb|EFE33914.1| hypothetical protein ARB_07378 [Arthroderma benhamiae CBS 112371]
          Length = 595

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++   +   GY+  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 IKSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 186 LSKLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 246 LRPCVIYGGGPSRDQRMELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELL 305

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 306 KSDWDVEFTKILAGGDINEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 366 LNVTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 426 DRTQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 486 GRTARIGNPGLATSFYNDKNSDIASDLVK 514


>gi|226291622|gb|EEH47050.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb18]
          Length = 443

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 7   SGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGE 66

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 67  LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYS 126

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 127 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVAN 186

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +P   +     +    +  + +                             
Sbjct: 187 EKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEA 246

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   V+  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 247 VDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 306

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 307 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 366

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 367 RTGRAGKSGVAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 417


>gi|12325365|gb|AAG52624.1|AC024261_11 photosystem II protein psbT, putative, 5' partial; 92652-90780
           [Arabidopsis thaliana]
          Length = 347

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/350 (29%), Positives = 182/350 (52%), Gaps = 7/350 (2%)

Query: 24  TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
           + +Q+  L P L+ +DV+  AQ+G+GKT    +++   +   + +         L ++P+
Sbjct: 1   SEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKV------QVLVLSPS 54

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q  + ++ + A T +    CIGG S+  + + L+ G H V GTPGR+ D I+   
Sbjct: 55  RELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGS 114

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           L    +K +VLDE+DEML  G +D I  +  + P   ++ + SAT+   I  + + +  D
Sbjct: 115 LQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTD 174

Query: 204 AVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
            VR+ +  +      I      +     + + + ++        AI+FC+TR  V   T+
Sbjct: 175 PVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTE 234

Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
            +    F V ++ G+  Q+ER + +   R  ++RV IA+DV ARGID+  +  VI+ ++ 
Sbjct: 235 KMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIP 294

Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           +NPE  +HR GR GR GR+G+++  +  +  +  + + R     +   PA
Sbjct: 295 NNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPA 344


>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 1130

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 191/361 (52%), Gaps = 8/361 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+  RG+   T +Q   +   L  +DV+  ++TGSGKT AF + L + 
Sbjct: 301 FESMNLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINK 360

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L       S      AL + PTRELA+Q+   L+     T +   + +GG  +  +   L
Sbjct: 361 LQNH----SRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESL 416

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   I++ TPGRL   I    L+++ ++ ++ DE D + ++GF D ++ IL    ++R+
Sbjct: 417 ASNPDIIIATPGRLSQLIDETDLSLNKVEFLIFDECDYLFEMGFADQMKTILKKVSQQRQ 476

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            LMFSATI   +++ A+   K+ V V + SE   + +I    +L   +++  ++V +L+ 
Sbjct: 477 TLMFSATIPEELSSFARAGLKEYVFVKLDSEFTINENITLNFILTRNNEKIASLVYLLKS 536

Query: 242 HGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +N+IVF ST+  V     +L +     V++ G++    R + +   R+ +  V +
Sbjct: 537 VIPSEENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCNVMV 596

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+A+RGIDLP++  VIH +  ++ +  +HRSGRT RAGRKG +  ++  N       +
Sbjct: 597 VTDLASRGIDLPNVNNVIHYDYPASTKIFIHRSGRTARAGRKGNTYALMGMNEIMYVSEI 656

Query: 360 F 360
            
Sbjct: 657 M 657


>gi|89100489|ref|ZP_01173351.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
 gi|89084832|gb|EAR63971.1| hypothetical protein B14911_05646 [Bacillus sp. NRRL B-14911]
          Length = 436

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/408 (27%), Positives = 190/408 (46%), Gaps = 13/408 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   I EA+ + G+   T +QE ++   L+    +  +QTG+GKT ++ L +   
Sbjct: 6   FERYELKPFIIEAVKKLGFYEPTEIQERLIPIILKGDSAIGQSQTGTGKTHSYILPILQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRE 117
           +              A+  APTRELA Q+ +E+    E       +   + IGG    R 
Sbjct: 66  IDPSRQ------GVQAVITAPTRELATQIHKEVLKVTEQADGDEEISSKLFIGGTDKQRT 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+    +VVGTPGR+ D ++   L +     +V+DEAD MLD+GF +D++ +    P
Sbjct: 120 IEKLKVQPQVVVGTPGRINDLVKENALLVHTASMLVVDEADLMLDMGFLEDVDQVAGKMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++   V I  +    + I++  +     ++   +  
Sbjct: 180 EKLQMLVFSATIPEKLKPFLKKYLENPKFVQIEPKQIAAAKIEHYLLPSKHKNKTEIVFR 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L       AIVF +T+         L +   +V  + G+LS +ER   ++ + D   + 
Sbjct: 240 ALEAFNPYLAIVFTNTKKKADEVADALMQKGLKVGRIHGDLSPRERKKMMKQIMDLEFQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ EL ++ +  +HR GRT RAG  G+++ +   + +    
Sbjct: 300 IVATDLAARGIDIQGISHVINYELPTDLDFYIHRVGRTARAGSSGIALTIYDTSDEDALN 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           RL +   +          E I   D  R  +     D I    +  V 
Sbjct: 360 RLEK-LGIEFKHVDLQKGEWIDLGDRNRRKKRQRQTDEIDAHAQSRVK 406


>gi|322701321|gb|EFY93071.1| DEAD/DEAH box RNA helicase [Metarhizium acridum CQMa 102]
          Length = 631

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/399 (27%), Positives = 178/399 (44%), Gaps = 30/399 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +  V+ E +   GY   T +Q+  +   L+  DV+  AQTGSGKT A+ + +
Sbjct: 98  LRTFKDAALHPVMAENIKLMGYDAPTPIQKYTIPSMLQGHDVIGIAQTGSGKTAAYLIPI 157

Query: 59  ASTLLAENDRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
              L+ +  + +                   PL L +APTRELAVQ+  E      ++ +
Sbjct: 158 LGKLMGKAKKLAAPRPNPATYREGIDAVTAEPLVLVVAPTRELAVQIFNEARKFCYRSML 217

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLD 162
              V  GG+ + ++   L  G  I+VGTPGRL D I    +     LK +++DEADEMLD
Sbjct: 218 RPCVVYGGLPMGQQISLLSKGCDILVGTPGRLVDFISRPHILTLRRLKYMIIDEADEMLD 277

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD----AVRVNIASENRQHSD 218
             + D++  IL    +    + +    +          +       VR  +        +
Sbjct: 278 SDWNDELSMILTGGEQDEGNIKYGLFSATFPKAARDLAKDHLSAAHVRFRVGRAGSTTEN 337

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I    +     ++ + ++ +L        I+F ++R  V      L      V ++  E 
Sbjct: 338 IKQVILATEREEKRDTLLRLLNQMTGVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSER 397

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGR 334
           +Q+ER  AL+  R G+A + IAT V ARGID+ ++  VI+ +L +      E   HR GR
Sbjct: 398 TQKEREAALRSFRAGQAPILIATGVTARGIDVRNVMHVINYDLPTMEHGGIEEYTHRIGR 457

Query: 335 TGRAGRKGMSVFVI-PQNMQRRAERLFR---EANVSVVW 369
           TGR G +G++     P N    A  L R   E    +  
Sbjct: 458 TGRIGHRGLATSFFDPVNDDSMASVLTRTLLETKQEIPE 496


>gi|313682309|ref|YP_004060047.1| dead/deah box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
 gi|313155169|gb|ADR33847.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
           16994]
          Length = 450

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 203/379 (53%), Gaps = 16/379 (4%)

Query: 1   MKIFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     + EAL    +  +TS+Q   L   L++KD +  A TGSGKT+AFGL +
Sbjct: 1   MSTFETLALRIPLKEALKRLEFTQMTSIQSQALPVILQKKDCIAQAATGSGKTLAFGLGV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +  +      +    +L + PTRELA QV + +  L ++ G +  +   GGV +  +
Sbjct: 61  LERINPK------SFGTQSLILCPTRELAEQVAKVIRSLASEIGNIKVLTLCGGVPMKGQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++GAHI+VGTPGR+   ++ +  + + ++ VVLDEAD+M+D+GF +DI  IL  +P
Sbjct: 115 IHSLKHGAHIIVGTPGRVLKLLQMETFDPAQIQTVVLDEADQMIDMGFIEDITSILGFTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT   +I T+  ++ KD V V       +    +   +    +D+  AI  
Sbjct: 175 PSRQSLLFSATFPESIQTITSDFMKDPVMVTAEHSLSKPKIEEIAYL---CNDKLPAISM 231

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+ HG  N I+FC+T+   +   + L       + L G++ Q +R+ A+   R+  A +
Sbjct: 232 VLQLHGITNTIIFCNTKVDANALCEDLNRIGVHALTLHGDMEQFDRNEAIIQFRNLSAPI 291

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA RGID+  L+ +I+ E+    E   HR GRTGRAG+ G+++ ++      R  
Sbjct: 292 LVATDVAGRGIDIEGLDAIINYEVPIQNERYTHRIGRTGRAGKNGIAITLVNHYQYERFI 351

Query: 358 RLFREANVSVVWEPAPSVE 376
            L R     V     P ++
Sbjct: 352 DLKR----PVTPIELPGIK 366



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K+K  A  ++  L    G++++ IG I     L++V V  +  + + + +
Sbjct: 375 MRTICIDAGKKEKLRAGDIVGALIHECGLSKEEIGKIDQLDHLSYVAVPRNIAENIYQKL 434

Query: 526 KLDKGIQLK 534
            +++ I+ K
Sbjct: 435 -VNRPIKGK 442


>gi|227525|prf||1705301A ATP dependent RNA helicase
          Length = 697

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 20/380 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL------ 62
           ++I   +    Y   T VQ+  +   + ++D++  AQTGSGKT AF L + S +      
Sbjct: 230 EIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPG 289

Query: 63  -----LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                L EN R+      PL+L +APTRELAVQ+  E      ++ V   V  GG  + +
Sbjct: 290 DAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQ 349

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF   I  I++  
Sbjct: 350 QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 409

Query: 177 PKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                   + +MFSAT    I  LA+++  + + + +        +I  + V V   D+ 
Sbjct: 410 TMPPKGVRQTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQKVVWVEEMDKR 469

Query: 233 NAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           + ++++L   G  +  +VF  T+         L E  +   ++ G+ SQ++R  AL   R
Sbjct: 470 DFLLDLLNATGKDSLTLVFVETKKGADALEDFLYEEGYACTSIHGDRSQRDREEALHQFR 529

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G++ + +AT VAARG+D+ +++ VI+ +L S+ E  + R GRTGR G  G++     + 
Sbjct: 530 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNLGLATSFFNEK 589

Query: 351 --NMQRRAERLFREANVSVV 368
             N+ +    L  EA   V 
Sbjct: 590 NINITKDLLDLLVEAKQEVP 609


>gi|326473030|gb|EGD97039.1| ATP-dependent RNA helicase DBP4 [Trichophyton tonsurans CBS 112818]
          Length = 703

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/401 (24%), Positives = 187/401 (46%), Gaps = 13/401 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 49  IESFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 109 LENLF--RKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +++ +VLDEAD ++D+GF++ ++ I++  PK
Sbjct: 167 ERLGRMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQNTVDAIVEHLPK 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+ A+ +   S +    V+  L D+ + + 
Sbjct: 227 ERQTMLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVTPLPDKLDTLW 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R       IVF S+   V    +   +    +  L     Q++ +           +
Sbjct: 287 SFIRSSLKSKVIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P    
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEI 406

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
               RL ++    +  E   ++ A +++  +  LQ+  F D
Sbjct: 407 GMLSRLEQK---KIPIEKI-NIRANKQQSIKHQLQNMCFKD 443


>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
 gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
           [Candida dubliniensis CD36]
          Length = 592

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 122/482 (25%), Positives = 224/482 (46%), Gaps = 20/482 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + ++E  +   T +Q A +   L  KD++  AQTGSGKT A+ + +   LL + 
Sbjct: 121 LSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYK- 179

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
               P+++   + + PTRELA+QV    + L      + + + +GG+++ ++   L+   
Sbjct: 180 ----PSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP 235

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML- 183
            IV+ TPGRL DHIR     ++  ++ +V+DEAD ML+ GF++++  IL   PK +R   
Sbjct: 236 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKRQTL 295

Query: 184 -MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +   +     +  + QK    +    +      +     +        A++  L   
Sbjct: 296 LFSATMNTRIQDLIQLSLQKPVRIMIDPPKQVASKLLQQFVRIRKRDHLKPALLYQLLKG 355

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   +VF + + +  +   VL     +V  L G LSQ++R   ++  +     V I TD
Sbjct: 356 VSTRVVVFVARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPVLICTD 415

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P +ELVI+ ++    E  LHR GRT RAGR G S+  + ++ Q RA  + + 
Sbjct: 416 LAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA--IVKA 473

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           A V+     A +V+  +     +I+      +D +  +EK+  ++L A+ +  K A+  +
Sbjct: 474 AIVN-GKGVAKTVDWNQAEQTSKIISSKESVIDEVLQEEKEAKELLRAEMELTK-ASNLI 531

Query: 422 RIHRAGLCAPEE-----ITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
           +  +     P+           L     +     R     G S    K +    +S   K
Sbjct: 532 KHEQEIHSRPKRTWFKGEVMEHLTKHGKKVNAKKRKANEEGRSYKKTK-TDRMKISNKKK 590

Query: 477 QK 478
            K
Sbjct: 591 SK 592


>gi|19746579|ref|NP_607715.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
 gi|94994869|ref|YP_602967.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|139473299|ref|YP_001128014.1| ATP-dependent RNA helicase [Streptococcus pyogenes str. Manfredo]
 gi|19748794|gb|AAL98214.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS8232]
 gi|94548377|gb|ABF38423.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
 gi|134271545|emb|CAM29769.1| putative helicase [Streptococcus pyogenes str. Manfredo]
          Length = 447

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 199/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|163782068|ref|ZP_02177067.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882600|gb|EDP76105.1| ATP-dependent RNA helicase DeaD [Hydrogenivirga sp. 128-5-R1-1]
          Length = 361

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/365 (30%), Positives = 181/365 (49%), Gaps = 12/365 (3%)

Query: 1   MKI-FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  F  +   +  AL E  +   T +QE+ +   L  KD+L+ A+TG+GKT AFG+ + 
Sbjct: 1   MQFNFNQLSNRLQNALEEIEFTKPTPIQESAIPVALEGKDLLIQARTGTGKTGAFGIPII 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRER 118
             L              AL +APTRELA+Q+   L  L   + + V +   G        
Sbjct: 61  EKL---------KRGERALVLAPTRELAIQIRDHLRDLARFSKISVFSFYGGTSVGRDLS 111

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +    +VVGTPGR+ D I    L +   K +VLDE D MLD+GFR+DIE+I+   P+
Sbjct: 112 LLERRIPDVVVGTPGRIKDLIERGALKLDTFKYLVLDEVDIMLDMGFREDIEWIVSKLPE 171

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVN 237
           +R+    SAT+   I  +A+ + K                I+   V       +   +  
Sbjct: 172 ERQTFFVSATVPREIREIARKFMKPGFEHISVESEELKPRINEIVVRTRSEIHKTEELER 231

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ILR +  +  IVF   + +       L +  + V AL G+++Q+ R   +++ R+ R +V
Sbjct: 232 ILRENDDEKIIVFVKMKRNAKELAYTLRKKGYNVEALHGDMTQKRRETVMKLFRNNRVKV 291

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+  + ++I+  L  +P    HR GRTGR G +G ++ ++  + +R   
Sbjct: 292 LIATDVASRGLDIEGVSMIINFHLPEDPRVYTHRIGRTGRFGSEGTAISLVSPSEKRNLW 351

Query: 358 RLFRE 362
           R+ + 
Sbjct: 352 RIEKH 356


>gi|328766962|gb|EGF77014.1| hypothetical protein BATDEDRAFT_645 [Batrachochytrium dendrobatidis
           JAM81]
          Length = 589

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 184/389 (47%), Gaps = 11/389 (2%)

Query: 7   IPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  + E +     Y   +S+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +
Sbjct: 67  MPPGVLEVIRRVLKYDRPSSIQSQAIPAIVGGRDVIGIAKTGSGKTIAFLLPMFRHIKDQ 126

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                     +AL + PTRELAVQ+ RE +       +    C GG  +  +  +L+ GA
Sbjct: 127 RP-IQAMEGSIALIMTPTRELAVQIHRECKHFTKILNLRAVCCYGGSPIKDQIAELKRGA 185

Query: 126 HIVVGTPGRLCDHIRGK---GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I++ TPGR+ D +        N+  +  +VLDEAD M D+GF   +  ++++    R+ 
Sbjct: 186 EIIICTPGRMIDLLCSNAGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKMVNNIRPDRQT 245

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--- 239
           ++FSAT    +  LA+   +  + + +   +   SD+     +    +     +  +   
Sbjct: 246 VLFSATFPRKMEALARKILRRPLEITVGGRSVVASDVTQIVEVHHDDETKFLRLLEILGL 305

Query: 240 --RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     ++F   + +       L    +   +L G   Q +R + L   + G   +
Sbjct: 306 SSATDPDAKILIFVDRQEAADSMLNKLLRRGYPCQSLHGGKDQADRDSTLSDFKTGSTNI 365

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IAT VAARG+D+  L++V++ E  ++ E+ +HR GRTGRAG KG +   I     R A 
Sbjct: 366 MIATSVAARGLDVKQLKIVVNYECPNHMEDYVHRVGRTGRAGNKGTAYTFILPEQDRFAL 425

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRI 386
            + +   +S V  P+ S++ + +R  ++I
Sbjct: 426 DIVKALTMSGVEVPS-SLQELTDRFMEKI 453


>gi|320168710|gb|EFW45609.1| myc-regulated DEAD box protein [Capsaspora owczarzaki ATCC 30864]
          Length = 707

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 184/418 (44%), Gaps = 11/418 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     +A+++  + ++T +Q   + P +  KD+L +A+TGSGKT+AF +      L   
Sbjct: 218 VSDKTLQAIADMKFTHMTEIQRRCIPPLVAGKDLLAAAKTGSGKTLAFLIPAIE--LMSQ 275

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F P +    + I+PTREL++Q       L         + +GG +  +E   L  G +
Sbjct: 276 LNFMPRNGTGVIIISPTRELSLQTYGVCRDLLRHHNHTFGLVMGGANRKQEAEKLCKGIN 335

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DH++     N  HL+ +++DEAD +L++GF ++++ I+   PK  +    
Sbjct: 336 ILIATPGRLLDHLQNTKGFNFKHLEMLIIDEADRILEIGFEEEMKQIIRLLPKDSQRRTV 395

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID-----YRAVLVALSDRDNAIVNILR 240
             + +                      + +             V+     R   +   L+
Sbjct: 396 LFSATQTRNVEDLARISLKKEPLYIGVDDEKIVATAEGLEQGYVVCKAGQRFLLLFTFLK 455

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV   +++L      V+ + G   QQ+R+N      + +  + + 
Sbjct: 456 KNQNKKVMVFFSSCNSVKFHSELLNYIDLPVLEIHGRQKQQKRTNTFFEFCNAKTGILLC 515

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT R     G ++  +         R 
Sbjct: 516 TDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRTARGVNGSGHALLFLLPEELAFL-RY 574

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            ++A V +     P  +    +   +++++   +L     D  +      A H    I
Sbjct: 575 LKQAKVPLNEYEFPVSKIHNVQSQLEKLIEKNYYLHRSARDGYRSYLQAYASHAHRSI 632


>gi|195028030|ref|XP_001986885.1| GH21617 [Drosophila grimshawi]
 gi|193902885|gb|EDW01752.1| GH21617 [Drosophila grimshawi]
          Length = 524

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 131/440 (29%), Positives = 206/440 (46%), Gaps = 25/440 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +QE  +   L  KD + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLAKQLTKLGLKGATPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKSRQNLFF 187

Query: 186 SATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +           +  S+      +D R +L A  DRD  +V        
Sbjct: 188 SATMKDFMKESSIFPIAKDCLEWSQDSDVATVDTLDQRYLLCADYDRDMVLVESLRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  LA    + V L G + Q+ER  AL   +    R  IA
Sbjct: 248 ENENSNVMIFTNTKKYCQLLSMTLANMEIENVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+++ +   P++++     
Sbjct: 308 TDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEAEINTKLTEHPIDQRMVERIFMQVNVSRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLCA 430
            DP+++ A + +  +  L  
Sbjct: 425 KDPDQMEALYRKKQKDKLRE 444


>gi|221061229|ref|XP_002262184.1| rna helicase [Plasmodium knowlesi strain H]
 gi|193811334|emb|CAQ42062.1| rna helicase, putative [Plasmodium knowlesi strain H]
          Length = 908

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 101/406 (24%), Positives = 180/406 (44%), Gaps = 42/406 (10%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ +++   +    Y   T +Q+  L+  + + D++  AQTGSGKT  + L + + +L  
Sbjct: 338 NLHEILLANIKRVNYDKTTPIQKYSLSIIMNKNDLIGVAQTGSGKTAGYLLPIINHMLLN 397

Query: 66  NDR---------------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           +                 ++    P+ L +APTRELAVQ+  + +    +TG+   V  G
Sbjct: 398 DPPKHTFYEENQRSSSYYYNRVCLPVCLILAPTRELAVQIFYDSKKFCFETGIKPVVLYG 457

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G ++  +  +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I 
Sbjct: 458 GSNIKMQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTSFLVLDEADRMLDMGFSPQIR 517

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ--------------- 215
            I+                +        N       +  ++  R+               
Sbjct: 518 SIMYDYDMPGNDNESRMNPNKMEYKRYTNEIVKRQTIMFSATFRKEIQVLAKEYLYNYTF 577

Query: 216 ---------HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
                    +  I    + +   ++ N ++ +L  +     I+F  T+       + L  
Sbjct: 578 LLIGKVGSTNEYIKQNLIYIEEENKCNYLLKLLSENNNGLTIIFVETKRKADILERFLNN 637

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
                V + G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN +
Sbjct: 638 QKLNAVCIHGDKSQDERERALKLFKRGIKNMLVATDVAARGLDISNIKHVINFDLPSNID 697

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           + +HR GRTGRAG  G++   +  + +   + L     E N ++  
Sbjct: 698 DYIHRIGRTGRAGNIGIATSFVNDDNRNIFKDLLATLEECNQAIPP 743


>gi|316979290|gb|EFV62098.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
          Length = 540

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/364 (30%), Positives = 178/364 (48%), Gaps = 8/364 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE       + + L+   +   + +Q       L  +D++  AQTGSGKT++F L    
Sbjct: 99  TFEEVGFTDSLTKQLNS-NFAKPSVIQATSWPIALSGRDMVGIAQTGSGKTLSFLLPSIV 157

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +  R      P+ L +APTRELA QV        ++ GV      GG S   ++R+
Sbjct: 158 HIKHQ-PRVERGEGPIVLVLAPTRELAQQVQEVAIEYGSRNGVRSVCVYGGASKGPQQRE 216

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  + + TPGRL D +R    N+     +VLDEAD MLD+GF   I  I+D +   R
Sbjct: 217 LERGVEVCIATPGRLLDFLRMGVTNLRRCTFLVLDEADRMLDMGFEPQIRQIVDQTRPDR 276

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIV 236
           + +MFSAT    +  LA+++ +D V VNI S     N     +          +R   ++
Sbjct: 277 QTIMFSATWPTEVRALAESFLRDYVFVNIGSLQLAANHNIEQVVEIVSEFEKHERLLKLL 336

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        ++F  T+      T+ L +  + V+++ G+ +Q ER   L   R G++ 
Sbjct: 337 QEVTKDSDPKVLIFVETKRKADELTRWLRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSP 396

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARG+D+ D++ V++ +     E+ +HR GRTGR  R G +      N  R A
Sbjct: 397 IVIATDVAARGLDVDDIKFVVNYDYPQCSEDYVHRIGRTGRCNRTGTAYTFFNANNARYA 456

Query: 357 ERLF 360
           + L 
Sbjct: 457 KDLI 460


>gi|255561546|ref|XP_002521783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223538996|gb|EEF40593.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 714

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 198/386 (51%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 301 LTPELLKAVERAGYEKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 360

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 361 PMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 420

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 421 CEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPE 480

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V VNI +  +    I    ++V 
Sbjct: 481 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVNIGTAGKATDLISQHVIMVK 540

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++   +  +L   G K AIVF +T+ +     K L +  ++V  L G  SQ++R  +L
Sbjct: 541 ESEKFFKLQRLLDEAGDKTAIVFVNTKKNADTVAKNLDKAKYRVTTLHGGKSQEQREISL 600

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  +  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 601 EGFRTKKYTVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVATTF 660

Query: 348 IP---QNMQRRAERLFREANVSVVWE 370
           +     ++    +++  ++N  V  E
Sbjct: 661 LTLHDTDVFYDLKQMLVQSNSHVPPE 686


>gi|308174303|ref|YP_003921008.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307607167|emb|CBI43538.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328554249|gb|AEB24741.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 438

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 192/379 (50%), Gaps = 14/379 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   F+  N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+ L
Sbjct: 1   MKETKFDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCIGGVS 113
            + + +   +D         A+  APTRELA Q+ +E   +        +     IGG  
Sbjct: 61  PILNRIDPGSDTV------QAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTD 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLDLGF +D+++I 
Sbjct: 115 KQKSIDKLKTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIG 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P++ +ML+FSATI   +    K Y ++    ++  +      I++  V     D+D 
Sbjct: 175 SRMPEELQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDK 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +++        IVF +T+ +     K L E   ++  L G L+ +ER   ++ + D 
Sbjct: 235 LLFDMMSNLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDL 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +   + +
Sbjct: 295 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDE 354

Query: 354 RRAERLFREANVSVVWEPA 372
               RL +   +   +   
Sbjct: 355 DALVRLEK-MGIEFAYAEL 372


>gi|156373178|ref|XP_001629410.1| predicted protein [Nematostella vectensis]
 gi|156216410|gb|EDO37347.1| predicted protein [Nematostella vectensis]
          Length = 471

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 155/401 (38%), Gaps = 15/401 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   + ERGY   T +Q          ++VL  A TGSGKT AF L +   L    
Sbjct: 54  FPDYIIHNVQERGYTTPTPIQMQATPLMAHGREVLCCAPTGSGKTAAFILPILHML---- 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    S   A+ ++PTRELA Q+ RE   L       + V     +         +   
Sbjct: 110 -KGPKKSGFRAVVVSPTRELAQQIYREFCHLAKGCAFRIHVLTKANASTNTFGAKSSKRF 168

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDE-------ADEMLDLGFRDDIEFILDSSPKK 179
            ++ T      H+  +      L  V            +E  D             +   
Sbjct: 169 DILVTTPNRLVHLLTQEPPGIELHNVEWLILDEADKLFEEGKDGFREQIATIYQACNKPD 228

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNI 238
               +FSAT+S  I   A  +  + VRV +   N   + +D     +   S +  A+ +I
Sbjct: 229 IHRGLFSATLSNGIEEWAGLHLDNHVRVTVGIRNSATATVDQELLFVGQESGKLLAVRDI 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       ++F  ++         L      V  +  + +Q +R N ++  R G+  V 
Sbjct: 289 VQKGFTPPVLIFVQSKDRAKELFHELIYDGINVDVIHSDRTQAQRDNIVKSFRTGKIWVL 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IAT++  RGID   + LVI+ +  ++    +HR GRTGRAGR G ++    +        
Sbjct: 349 IATELMGRGIDFKGVNLVINYDFPTSAVAYIHRIGRTGRAGRTGKAITFFTEEDTTSLRS 408

Query: 359 LFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQ 397
           +      S    P     ++    R+ +++ + P+   +IQ
Sbjct: 409 IANVIKSSGCDVPDWMLKIKKASRREKKKLEKAPVKRAAIQ 449


>gi|301300913|ref|ZP_07207085.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851512|gb|EFK79224.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 440

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 109/395 (27%), Positives = 188/395 (47%), Gaps = 10/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
            D         A+   P+RELA Q+    + L   +     +     G     +  +   
Sbjct: 68  KDEV------QAVITTPSRELAYQIYEAAKQLAKFSSENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   +     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++ +   + ++  + L   
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELE-S 360

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             V  V +   + E +   D  R  +     +S+ 
Sbjct: 361 MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMD 395


>gi|169630612|ref|YP_001704261.1| ATP-dependent DEAD-box RNA helicase [Mycobacterium abscessus ATCC
           19977]
 gi|169242579|emb|CAM63607.1| Probable ATP-dependent DEAD-box RNA helicase [Mycobacterium
           abscessus]
          Length = 490

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 173/379 (45%), Gaps = 12/379 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   + I  AL E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 7   TFAQLGVRKEIARALREAGIEHPFAIQELTLPLALAGSDLIGQARTGMGKTYAFGVPLLH 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-----VVVAVCIGGVSVH 115
            +    +       P AL + PTREL +QV  +L               V    GG    
Sbjct: 67  RIATGVEDRPLNGTPRALVVVPTRELCIQVYEDLTKASKYLSAGDRDFTVVSIYGGRPYE 126

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF---- 171
            +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE     
Sbjct: 127 PQIEALRAGADVVVGTPGRLLDLAQQGHLQLGGLAMLVLDEADEMLDLGFLPDIERILAL 186

Query: 172 -ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
                + ++  +   +              +   +R      +  H   +         D
Sbjct: 187 APSADAGRQSMLFSATMPDPIITLARTFMNRPTHIRAEDPQASSVHDSTEQFVYRAHALD 246

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   +  IL+  G    ++F  T+ +  + +  LAE  F V A+ G+L Q  R  AL   
Sbjct: 247 KIELVSRILQADGRGATMIFTRTKRTAQKVSDELAERGFAVGAVHGDLGQIAREKALTSF 306

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  
Sbjct: 307 RSGQINVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGRTGIAVTLVDW 366

Query: 351 NMQRRAERLFREANVSVVW 369
           +   R + + +   + V  
Sbjct: 367 DDIARWQLIDKALGLGVPE 385


>gi|296420816|ref|XP_002839964.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636172|emb|CAZ84155.1| unnamed protein product [Tuber melanosporum]
          Length = 593

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 23/396 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M IF+   +  V+   +   GY   T +Q   +   L   D+L  AQTGSGKT AF + +
Sbjct: 144 MSIFDEAPLHPVMKGNIKLAGYEIPTPIQRYCIPAILEGHDLLSCAQTGSGKTAAFLIPI 203

Query: 59  ASTLLAEN-----DRFSPAS------APLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
            S L+ +       R  P S       PL L +APTRELA Q+  E      ++ +   V
Sbjct: 204 LSKLMGKASSLAAPRPVPGSTEPYIAQPLVLVVAPTRELATQIFDESRRFCYRSKLRPCV 263

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFR 166
             GG     +R +L+ G  I+VGTPGRL D I    + ++  LK VV+DEADEMLD+GF 
Sbjct: 264 VYGGADSATQRMELKKGCDILVGTPGRLADFIERGRILSLRRLKFVVIDEADEMLDMGFE 323

Query: 167 DDIEF------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
             I          +    ++ ++  +                D V + +      H +I 
Sbjct: 324 PQIRKLLQSSGNANEDDDQQVLMFSATFQKAIRKLARDFLSDDFVHIKVGRIGSTHENIT 383

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R + V    +  AI ++L        ++F + +         L        ++ G+ +Q
Sbjct: 384 QRVLWVDELRKKEAIYDLLCTAPPARTLIFVNHKRVADSLDDYLYNLKLPTTSIHGDRTQ 443

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER +A+   R G+  + IAT VAARG+D+ ++  VI+ ++  N +  +HR GRT R G 
Sbjct: 444 REREDAILAFRSGKCPIMIATAVAARGLDIKNVMHVINYDMVQNIDEYIHRIGRTARIGN 503

Query: 341 KGMSVFVIPQNMQRRAERLFR---EANVSVVWEPAP 373
           +G++      + +  A  L +   E++  +     P
Sbjct: 504 RGLATSFYNSSNEGIASDLVKVLLESSQEIPEFLEP 539


>gi|240254385|ref|NP_177829.4| ATP binding / ATP-dependent helicase/ RNA binding / helicase/
           hydrolase, acting on acid anhydrides, in
           phosphorus-containing anhydrides / nucleic acid binding
           [Arabidopsis thaliana]
          Length = 891

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 206/463 (44%), Gaps = 16/463 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +  A+ ++GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P     AL ++PTR+LA Q  +  + L   T + V++ +GG S+  +  +L
Sbjct: 90  L----KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEEL 145

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G  +++ TPGRL   +          ++ VV DEAD +  +GF + +  IL    + R
Sbjct: 146 TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENR 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   ++   V +  EN+   D+    + V   ++ +A++ ++R
Sbjct: 206 QTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVR 265

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            H    +  ++F ST+  V     +      +     G++ Q  R   +   R  +  + 
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLL 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+AARGID+P L+ VI+ +    P+  +HR GR  RAGR G +   +          
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLD 385

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-----IQGDEKKMVDVLLAKHDP 413
           L     +S    PAP+ + + +   + + +    +DS      +  +K +  +     + 
Sbjct: 386 L--HLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREM 443

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              +A    + R    A    +       ++  R      + G
Sbjct: 444 IDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREG 486


>gi|75318355|sp|O49289|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29
 gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana]
 gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
          Length = 845

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 206/463 (44%), Gaps = 16/463 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +  A+ ++GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P     AL ++PTR+LA Q  +  + L   T + V++ +GG S+  +  +L
Sbjct: 90  L----KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEEL 145

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G  +++ TPGRL   +          ++ VV DEAD +  +GF + +  IL    + R
Sbjct: 146 TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENR 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   ++   V +  EN+   D+    + V   ++ +A++ ++R
Sbjct: 206 QTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVR 265

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            H    +  ++F ST+  V     +      +     G++ Q  R   +   R  +  + 
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLL 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+AARGID+P L+ VI+ +    P+  +HR GR  RAGR G +   +          
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLD 385

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-----IQGDEKKMVDVLLAKHDP 413
           L     +S    PAP+ + + +   + + +    +DS      +  +K +  +     + 
Sbjct: 386 L--HLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREM 443

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              +A    + R    A    +       ++  R      + G
Sbjct: 444 IDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREG 486


>gi|47207397|emb|CAF90961.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 502

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 169/398 (42%), Gaps = 37/398 (9%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + +   
Sbjct: 91  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLER 150

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +  + D         AL + PTRELA+QV +  ++      GV V    GG ++  +   
Sbjct: 151 IDLKKDHI------QALVLVPTRELALQVSQISIQIAKHLGGVKVMATTGGTNLRDDIMR 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML------------------- 161
           L    H+V+ TPGR+ D ++     +  ++ +V+DE  +                     
Sbjct: 205 LDETVHVVIATPGRILDLMKKGVAKVDKVQIMVMDEVGKRTPKAALCGGVGAAGPCVWVV 264

Query: 162 --------DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
                      F   +E I+    K R++L++SAT   ++      + +    +N+  E 
Sbjct: 265 SPQADKLLSQDFVALVEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL 324

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
                       V    + + +  +        +I+FC++   V    K + +  +    
Sbjct: 325 TLKGI-TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFY 383

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           +  ++ Q+ R+      R+G  R  + TD+  RGID+  + +VI+ +   N E  LHR G
Sbjct: 384 IHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG 443

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           R+GR G  G+++ +I  + +   + +  +    +   P
Sbjct: 444 RSGRFGHLGLAINLITSDDRFNLKTIEEQLITDIKPIP 481


>gi|7022744|dbj|BAA91709.1| unnamed protein product [Homo sapiens]
          Length = 670

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 211/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF   +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMTRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|227891108|ref|ZP_04008913.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227866982|gb|EEJ74403.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 440

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/395 (27%), Positives = 188/395 (47%), Gaps = 10/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
            D         A+   P+RELA Q+    + L   +     +     G     +  +   
Sbjct: 68  KDEV------QAVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   V     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLVSTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++ +   + ++  + L   
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELE-S 360

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             V  V +   + E +   D  R  +     +S+ 
Sbjct: 361 MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMD 395


>gi|260808869|ref|XP_002599229.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
 gi|229284506|gb|EEN55241.1| hypothetical protein BRAFLDRAFT_64422 [Branchiostoma floridae]
          Length = 436

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 176/369 (47%), Gaps = 23/369 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++    V+ EA     +   T +Q   +   L  KDV+  A+TGSGKT  F L + 
Sbjct: 21  TTFKDLGVVDVLCEACEHLKWTTPTKIQTEAIPLALEGKDVIGLAETGSGKTGTFALPIL 80

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +LL +  R        AL + PTRELA Q+  + E L +  G+   V +GG+ +  +  
Sbjct: 81  QSLLEKPQR------LFALVLTPTRELAFQISEQFEALGSSIGIKCVVVVGGIDMVTQAL 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H+++ TPGRL DH+             +               ++ IL   P++
Sbjct: 135 QLAKKPHVIIATPGRLVDHLENTKGFNLRALKYL---------------VDKILKVIPRE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L +    + V+V + S+ +    +    + +    +D  +V+IL
Sbjct: 180 RHTYLFSATMTKKVAKLQRASLSNPVKVEVNSKYKTVDTLQQSYLFIPSKYKDVYLVSIL 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VFCST  +  R   +L    F  + L G+LSQ  R  AL   +     + I
Sbjct: 240 NELAGNSFMVFCSTCNNTQRTAFLLRNLGFNAIPLHGQLSQNSRLGALHKFKAKSRSILI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R+
Sbjct: 300 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELYQRI 359

Query: 360 FREANVSVV 368
                  + 
Sbjct: 360 EHLIGKKLP 368


>gi|29830698|ref|NP_825332.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607811|dbj|BAC71867.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 502

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 125/383 (32%), Positives = 191/383 (49%), Gaps = 13/383 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  ALS  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 68  FADLAMPSQLLAALSSEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 127

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R  P   PLAL + PTRELA QV   L        + +   +GG+S+ R+   L
Sbjct: 128 --TAGQRAEPRQ-PLALVLVPTRELAQQVTDALAPYARSVKLRLTTVVGGMSIGRQSGAL 184

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 185 RAGAEVVVATPGRLKDLIDRGDCRLDQVGITVLDEADQMADMGFMPQVTALLDQVRPEGQ 244

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 245 RMLFSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHQ--ATTEIA 302

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 303 ARDGRVIMFLDTKHAVDRLTEHLLSSGVRAAALHGGKSQPQRNRTLSQFKTGHVTVLVAT 362

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  S+ ++ LHR GRT RAG+ G  V ++  + +R   RL  
Sbjct: 363 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGQSGSVVTLVTPHQRRDMSRLMT 422

Query: 362 EANVSVVWEPAPSVEAIRERDAQ 384
            A +       P    +R  DA+
Sbjct: 423 VAGI------VPQTTQVRSGDAE 439


>gi|260072689|gb|ACX30586.1| hypothetical protein SUP05_FGYC65E210031 [uncultured SUP05 cluster
           bacterium]
          Length = 440

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 127/390 (32%), Positives = 207/390 (53%), Gaps = 13/390 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY ++T +Q+  L   L  KDV+   +TGSGKT AFGL L   L  ++ +        +
Sbjct: 1   MGYQSMTPIQQLSLPAILSGKDVIGQGKTGSGKTAAFGLGLLQKLDVKSFKA------QS 54

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           + + PTRELA QV  E+  L      + V    GG     +   L++G HIVVGTPGR+ 
Sbjct: 55  IVLCPTRELADQVATEIRKLARAIHNIKVLTLCGGAPFGPQIGSLEHGVHIVVGTPGRIE 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           +H+R   L +  +  +VLDEAD MLD+GF+D I+ I++  P KR+ L+FSAT    I ++
Sbjct: 115 EHLRKGTLKLGSITTLVLDEADRMLDMGFQDTIDEIIEKIPSKRQTLLFSATFPNEIASI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           A+   ++   V   S + + +   Y     +  DR  A+  +L  H  ++ ++FC+T+  
Sbjct: 175 AERVMQNPTMVEAPSTHEESTIKQYFYKANSADDRMTALRLLLAKHKPESVLIFCNTKID 234

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L  + F  +A+ G+L Q+ER  AL    +    V +ATDVAARG+D+  L++V
Sbjct: 235 TQDVADELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSVLVATDVAARGLDIDALDMV 294

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++  ++ +PE  +HR GRTGRAGR G++  +       + + L  + +     +P PS  
Sbjct: 295 VNFNIAHDPEVHVHRIGRTGRAGRSGIACTLYGDRETHKLDALELDIDFDRYTDPLPS-- 352

Query: 377 AIRERDAQRILQDPLF-LDSIQGDEKKMVD 405
              +    ++++ PL     I G +K+ + 
Sbjct: 353 ---DSYLDKLIKKPLMTTLKIDGGKKQKLR 379



 Score = 62.7 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   +  G KQK     ++  L    GI    IG I V  + ++V VS++ V +  + +
Sbjct: 365 MTTLKIDGGKKQKLRPGDIVGGLTGKGGIPGDKIGKINVSSNWSYVAVSSELVKVALKKI 424

Query: 526 KLDK 529
             DK
Sbjct: 425 SNDK 428


>gi|294630456|ref|ZP_06709016.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833789|gb|EFF92138.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 514

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 186/368 (50%), Gaps = 7/368 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   ++P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 74  VETFAELDLPARLLTALEREGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 133

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R +    PLAL + PTRELA QV   L       G+  A  +GG+S+ R+ 
Sbjct: 134 LAR---TAGRRAEPRQPLALVLVPTRELAQQVTDALTPYARALGLRAATVVGGMSIGRQA 190

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 191 GALRGGAELVVATPGRLKDLIDRGDCRLDEVAVTVLDEADQMADMGFMPQVTALLDQVRP 250

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 251 DGQRLLFSATLDRNIDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHDTDKHRTTTE- 309

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R TK L     +   L G  SQ +R+  L   + G+  V 
Sbjct: 310 -IAARDGRTIMFLDTKHAVDRLTKHLLNSGVRAAGLHGGKSQPQRNRTLTQFKTGQVTVL 368

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 369 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRAMNR 428

Query: 359 LFREANVS 366
           L   A +S
Sbjct: 429 LMASAGIS 436


>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
          Length = 829

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/489 (25%), Positives = 210/489 (42%), Gaps = 38/489 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 305 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 364

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 365 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 421

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 422 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPK 481

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 482 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYL 541

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       IVF  ++    R   +      +V  L G +SQ++R  +++  RDG+ 
Sbjct: 542 IVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKV 601

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 602 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 661

Query: 356 AERLF---REANVSVVWEPAPSVEA-----------------IRERDAQRILQDPLF--- 392
            +      R     +V     + EA                 +RE   ++ L        
Sbjct: 662 VKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVT 721

Query: 393 ----LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
               L + + +          + + EK+ A   +     L  P +     L     +  D
Sbjct: 722 RGSNLLNHEKEIMSRPKRTWFESEKEKLQAK--QRSLEELNGPSKKKKGKLSGKDKKKLD 779

Query: 449 DSRAFKVGG 457
           D+R  + G 
Sbjct: 780 DNRERREGK 788


>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 939

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 189/404 (46%), Gaps = 14/404 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I EA+   GY   T +Q       L  +DV+  A+TGSGKT+AF L +   L    
Sbjct: 12  FSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVLPMLQRLGC-- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + S       L ++PTREL +Q  R +     KT + +    GG S+ R+  +L     
Sbjct: 70  -KHSTIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFENLSGNPD 128

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRLC HI    L++S +  +VLDEAD + + G    I+ I+   P  R+ ++ S
Sbjct: 129 IVIATPGRLCHHIVEAKLSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPASRQCILVS 188

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   + + ++    +   + + S++     +    +     D+      +  +     
Sbjct: 189 ATMPTGLVSFSRAKLVEPEFIRLDSDHLISDTLKLIFIFTREDDKLATLLYLLRVTIPHN 248

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VFC+T+  V    K+L E    + ++ G + Q  R+  L   R  + RV I TD+A
Sbjct: 249 ERVMVFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTRVMIVTDIA 308

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P LE VI+ +   + +  +HR+GRTGRAG+ G +  ++          L     
Sbjct: 309 ARGLDIPLLENVINFDYPLSAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYTVDLMLFLG 368

Query: 365 VSVV----WEPAPSVEA-----IRERDAQRILQDPLFLDSIQGD 399
           + V         P+++A     I ++D    L+     +++  D
Sbjct: 369 LRVSTLTNKTKDPNIQATDISNIGDKDNNITLESEKVEENLLKD 412


>gi|223947385|gb|ACN27776.1| unknown [Zea mays]
          Length = 430

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/417 (25%), Positives = 189/417 (45%), Gaps = 33/417 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + EA    G+   T +Q   +   L+ KD++  AQTGSGKT AF L + 
Sbjct: 24  STFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPIL 83

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL+         +  A  ++PTRELA+Q+  + E L +  G+  +V +GGV   ++  
Sbjct: 84  QELLSNRQA---EQSFFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVL 140

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +    HIV                        VLDEAD++L++ F   ++ IL   PK 
Sbjct: 141 SIGKRPHIV------------------------VLDEADKLLNVEFEKSLDDILSEMPKD 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT++  +  L +   ++  +V ++S+      +      V   D+D  ++++L
Sbjct: 177 RRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDKDCYLLHVL 236

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F  T  S      +L     + +++SG++SQ +R  AL   +     + I
Sbjct: 237 NERLESMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILI 296

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVA+RG+D+  +++VI+ ++  N ++ +HR GRT RAGR G +V ++ Q   +    +
Sbjct: 297 CTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLI 356

Query: 360 FREANVSVVWEPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            +     +        E +  +    DA+RI    L         + + D      D
Sbjct: 357 EQLLGKKIDQCKVDRDEVLILKGPISDAKRIALTKLKDSGGHKKRRNVGDDDEEVED 413


>gi|330925821|ref|XP_003301209.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
 gi|311324270|gb|EFQ90696.1| hypothetical protein PTT_12655 [Pyrenophora teres f. teres 0-1]
          Length = 690

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 182/406 (44%), Gaps = 27/406 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  +   + + GY   T +Q A +   L+ +D++  A+TGSGKT AF L L + +  L 
Sbjct: 276 LPDQLMRIVDQVGYTEPTPIQRAAIPIALQCRDLIGVAKTGSGKTAAFLLPLLAYISQLP 335

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +APTRELA Q+  E        G   AV +GG S+  +   +++G
Sbjct: 336 PLDAINRHDGPYALILAPTRELAQQIEEEARKFATPLGFRTAVLVGGHSIEEQSFQMRDG 395

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  IL + P       
Sbjct: 396 AEIIIATPGRLNDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILAALPVSNEKPD 455

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------------YRAV 224
                 P         Q       +     + +                        R  
Sbjct: 456 TEEAEDPDAMKRGLYRQTMMYTATMPPALERIAKQYSRRPAIVTIGNLGEATDTVEQRVE 515

Query: 225 LVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            +   ++    +  +      A   IVF + + +     + +    F    + G  +Q++
Sbjct: 516 FIQGEEKRKKRLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSSATMHGSKTQEQ 575

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL  ++ G+  V +ATD+A RGID+PD+ LV++  + S+ E   HR GRTGR  +KG
Sbjct: 576 REAALAALKSGQTNVLVATDLAGRGIDIPDVSLVVNFNMPSSIEAYTHRIGRTGRQDKKG 635

Query: 343 MSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
            ++              +++  ++N+S V E     EA +++  +R
Sbjct: 636 TAITFWGNEDADVLYDLKQILTKSNLSKVPEDLRKHEAAQQKGKKR 681


>gi|78357523|ref|YP_388972.1| DEAD/DEAH box helicase-like [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219928|gb|ABB39277.1| DEAD/DEAH box helicase-like protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 530

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 187/356 (52%), Gaps = 3/356 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA+S RG+VN T +QE  L P L  +D+L  A TG+GKT AF L L   LL +
Sbjct: 62  SLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLAATGTGKTAAFVLPLLHRLLLQ 121

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +  S      AL +APTREL  Q+  E++ L     +  A   GGV +H +   L+ G 
Sbjct: 122 GE--SARGTLRALVVAPTRELVAQIHEEVKTLARFCRLRSATVYGGVGMHAQTVQLRTGV 179

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+  PGRL DH+R    ++SH+  +VLDEAD M D+GF  D+  IL  +  +++ ++F
Sbjct: 180 DIVLACPGRLLDHVRRGHADLSHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQTMLF 239

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  LA+   +  VR+           + +    V    +   +  +LR     
Sbjct: 240 SATMPAPLRELAEECLRQPVRI-ELDTCAIAPTVRHSLCPVPKHLKTPLLKYVLRAFARD 298

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + +VF  TR    R  + L +   +   L G LSQ  R  AL+  R G  RV +ATD+AA
Sbjct: 299 SVLVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRVMVATDIAA 358

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RGID+  +  VI+ +   + E  +HR+GRTGRA   G+++  + Q  + +   L R
Sbjct: 359 RGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTFVTQEDEPQVRTLER 414


>gi|146104248|ref|XP_001469774.1| DEAD box RNA helicase [Leishmania infantum]
 gi|134074144|emb|CAM72886.1| putative DEAD box RNA helicase [Leishmania infantum JPCM5]
 gi|322503544|emb|CBZ38630.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 658

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 164/370 (44%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +   
Sbjct: 170 LNPHIVSALEQEFKFKELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRS 229

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
              F P++   A+ I PTREL +Q+   L  L       +                +   
Sbjct: 230 G--FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLAN 287

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +V      L         +  +L  + +DEAD +LD GF +D+  I+   PK R+ 
Sbjct: 288 GVMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQT 347

Query: 183 LMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT +  +     ++ +     + +    +      ++   V+ A   R   + + +
Sbjct: 348 FLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFV 407

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V  
Sbjct: 408 KKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLF 467

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++  +    +   + L
Sbjct: 468 TTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELFLKYL 527

Query: 360 FREANVSVVW 369
           + +A V V  
Sbjct: 528 YDDAKVKVNE 537


>gi|218889855|ref|YP_002438719.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
 gi|254236766|ref|ZP_04930089.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|254242553|ref|ZP_04935875.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|308154507|ref|NP_252550.3| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|32363412|sp|Q9HXE5|RHLB_PSEAE RecName: Full=ATP-dependent RNA helicase rhlB
 gi|122261039|sp|Q02S21|RHLB_PSEAB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739542|sp|B7UUT0|RHLB_PSEA8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|9950039|gb|AAG07248.1|AE004803_4 ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAO1]
 gi|115587113|gb|ABJ13128.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168697|gb|EAZ54208.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa C3719]
 gi|126195931|gb|EAZ59994.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 2192]
 gi|218770078|emb|CAW25840.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa LESB58]
          Length = 397

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 15  NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 75  PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 135 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 195 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 255 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 315 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 374

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 375 LLGRKITCEMPPA 387


>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
          Length = 730

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 180/382 (47%), Gaps = 13/382 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE   +   +   + +  Y   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 277 IHSFEESTLCPEVKCNVVKAKYSKPTPVQKYGIPIISGGRDLMACAQTGSGKTAAFLLPI 336

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + +L++      FS    P  + ++PTREL  Q+  E       T +   V  GG SV 
Sbjct: 337 INGMLSDGVTGSSFSEFQEPQCIIVSPTRELTSQIYNEAYKFARGTMLRPVVIYGGTSVG 396

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R++  G H++V TPGRL D I    + +S  K +VLDEAD MLD+GF  ++E ++  
Sbjct: 397 HQLREVGKGCHLLVATPGRLMDFINRGRIKVSKCKYLVLDEADRMLDMGFGPEMEKLIYL 456

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    +   A  Y +D + + +        DI    + V   D+
Sbjct: 457 PDMPKKGERQCLMFSATFPQEVQQKAAEYLEDYLFLTVGRVGGATPDITQTIIEVGKYDK 516

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  +L  +  +  +VF  T+         L +      ++ G+  Q+ER  AL   R
Sbjct: 517 KEKLSEMLMNNPDERTLVFTETKRGADFLATCLCQESLPATSIHGDREQREREEALADFR 576

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            GRAR+ +AT VAARG+D+  ++ V++ ++ S+ E  +HR G TGR G  G +       
Sbjct: 577 SGRARISVATSVAARGLDISGVKHVVNYDMPSSIEEYVHRIGWTGRVGNLGKATSFYDAM 636

Query: 349 -PQNMQRRAERLFREANVSVVW 369
                 R   ++  +A   V  
Sbjct: 637 SDSQNARALIKILADAQQDVPE 658


>gi|154345774|ref|XP_001568824.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066166|emb|CAM43956.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 527

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 219/479 (45%), Gaps = 28/479 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++   + +  A +E G+ + T +Q + +      +D++  AQTGSGKT A+ L L 
Sbjct: 53  KTFKDLGLCRELCMACAEAGWQHPTRIQASTITVVAEGRDLIGVAQTGSGKTGAYALPLV 112

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL +            L + PTRELA QV  +   L    G+ VA  +GG  +  +  
Sbjct: 113 NWLLTQPK----TPYLSVLVMVPTRELAQQVTAQFLLLGRSVGLRVATLVGGADMVEQAC 168

Query: 120 DLQNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L    H IV             KG  +  L A+VLDEAD+MLD+ +  +I+ IL+  P+
Sbjct: 169 ELSKRPHVIVGTPGRVKDHLSNTKGFKLVKLHALVLDEADKMLDMDYEKEIDAILEQLPQ 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR ++FSAT+S  +  L K   +D V + +  +N     +    +    +   + +   
Sbjct: 229 DRRTMLFSATLSTKVDRLQKASLRDPVLLQVHRKNTTVDTLKQYYIFAPFAQMLSYLHLF 288

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L      + ++FC + A V R T  L     + + L G + Q  R+ AL   ++G+ R+ 
Sbjct: 289 LTKETGNHILIFCRSAALVHRITLALRTLGHRALPLMGRMDQSNRNIALTKFKEGKVRML 348

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVA RG+D+P  ++V++  L  + E+ +HR GRT RAG +G +V +I Q      ++
Sbjct: 349 ICTDVAQRGLDIPHTDVVVNFSLPDHVEDYIHRVGRTARAGAEGKAVNLISQYDIVLLQK 408

Query: 359 LFREANVSVVWEP-APSVE-----------------AIRERDAQRILQ-DPLFLDSIQGD 399
           + ++  V  V  P  P  E                  IRE   +R L+ +   L + +  
Sbjct: 409 IEQQTGVKCVEYPSLPESEVQLVLQRVEDAEQEAIREIREDAGERNLEKESRQLTTARKG 468

Query: 400 EKKMVDVLLAKHDPEKIAAGF--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           ++   D  +   D +   + F  LR+ R      E        S   + R+  +  K  
Sbjct: 469 KRDRGDTDMGYDDAKHGTSDFATLRMRREHESIFEMTKKEQHRSLWAKRREAKKHAKSR 527


>gi|156057183|ref|XP_001594515.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980]
 gi|154702108|gb|EDO01847.1| hypothetical protein SS1G_04322 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 638

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 181/388 (46%), Gaps = 27/388 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  +  V+ E +   GY   T +Q+  L    +  DV+  AQTGSGKT AF + +
Sbjct: 154 IRKFEDAGLHPVMLENVKLAGYHVPTPIQQYCLPAVKKGHDVVACAQTGSGKTAAFLIPI 213

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL + + P+RELA Q+  E      +T 
Sbjct: 214 LSKLMGKAKKLAAPRPNPATYVPSQDNYIKAEPLVVIVCPSRELATQIFDEARRFCYRTM 273

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEML 161
           +   V  GG  +  +   L  G  +++GTPGRLCD IR         LK +V+DEADEML
Sbjct: 274 LRPCVVYGGGPLAEQLGQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEML 333

Query: 162 DLGFRDDIEFIL----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D  + +++  I+            M+  +     A     ++   D VR+ +      HS
Sbjct: 334 DSSWEEELRQIMSGGDQEEGNINYMMFSATFPKMARDIAKEHLAHDHVRIRVGRAGSSHS 393

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           +I    + V  + +  A+ ++L        I+F +T+ +       L  +     ++  +
Sbjct: 394 NIKQDIIYVEAASKRKALYDLLLSIPPARTIIFVNTKRTADEIDDYLFNNDLPCTSIHSD 453

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSG 333
            +Q+ER ++++  R+GR  + IAT V+ARG+D+ ++  VI+ +L S      E   HR G
Sbjct: 454 RTQREREDSIRAFRNGRMPILIATGVSARGLDVHNIMHVINFDLPSQAHGGIEEYTHRIG 513

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           RTGR G +G++        +  AE L +
Sbjct: 514 RTGRIGNRGLASSFYNDRNEDIAEALVK 541


>gi|295397327|ref|ZP_06807419.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
 gi|294974401|gb|EFG50136.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
          Length = 450

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 175/363 (48%), Gaps = 10/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +AL++  +   + +Q  ++      +DV+  +QTGSGKT AF L L + + AE
Sbjct: 7   NLKPFINDALADLNFYEPSPIQATVIPVIQSGRDVIAQSQTGSGKTHAFLLPLLNKITAE 66

Query: 66  NDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N           +  AP+RE      Q GR++     +   +     G  +V +  R   
Sbjct: 67  NH-------TQLVITAPSRELAEQLYQAGRQILSFSDEDLHIERAFGGTDTVKQANRLEN 119

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +VV TPGRL D I  + +++  +   V+DEAD  LDLGF ++++ I    PK   M
Sbjct: 120 AVPQVVVATPGRLLDLINNQLISVHQVTDFVVDEADMTLDLGFLNEVDQIAGRMPKSLNM 179

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI   +    + Y  +   + I + ++    ID   V V   DR   + + L   
Sbjct: 180 YVFSATIPDKLKPFLRKYLSNPEWITIEARHKISDTIDNYLVPVKGRDRKALLFDTLTIG 239

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+ +V    K L      V  + G+L  +ER   ++ +++   +  +ATD
Sbjct: 240 QPYLALIFANTKETVQELYKYLKSQGLNVGQIHGDLPARERRRVMKQVQNLDFQYVVATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ E+ +  E  +HR GRTGR G+ G ++     +  +  E L  +
Sbjct: 300 LAARGIDIDGVSHVINYEVPNELEFFIHRVGRTGRQGKPGTAITFYIPDELKDIEWLENK 359

Query: 363 ANV 365
             +
Sbjct: 360 GII 362


>gi|291391442|ref|XP_002712440.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Oryctolagus
           cuniculus]
          Length = 665

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 214/427 (50%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F+++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 172 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIP 231

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 232 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 289

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 290 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 349

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 350 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 409

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 410 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 469

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 470 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 528

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 529 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 586

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 587 SHSLKQI 593


>gi|216397600|gb|ACJ72832.1| DEAD box polypeptide 18 (predicted) [Oryctolagus cuniculus]
          Length = 622

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 214/427 (50%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F+++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 129 TSFDSLTNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIP 188

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 189 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 246

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 247 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 306

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 307 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 366

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 367 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 426

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 427 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 485

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 486 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 543

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 544 SHSLKQI 550


>gi|26344732|dbj|BAC36015.1| unnamed protein product [Mus musculus]
          Length = 660

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 213/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 167 TSFASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 226

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 227 VIELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 284

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 285 VQKLLNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 344

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         ++++ + +D      V+     R  
Sbjct: 345 PARRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFL 404

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 405 LLFTFLKKNRKKKVMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 464

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 465 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKECIHRVGRTARGLNGR-GHALLILRPE 523

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         V  I+ +  +++++   FL     +  K       
Sbjct: 524 ELGFL-RYLKQSKVPLNQFDFSWSKVSDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 581

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 582 SHSLKQI 588


>gi|326923424|ref|XP_003207936.1| PREDICTED: hypothetical protein LOC100542017, partial [Meleagris
            gallopavo]
          Length = 1461

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 202/438 (46%), Gaps = 19/438 (4%)

Query: 4    FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            F N P  +   + L  RG   L  VQ    +P    KDV+  AQTG+GKT +F + L   
Sbjct: 872  FSNFPISKGTVQLLQARGVTYLFPVQVKTFHPVYSGKDVIAQAQTGTGKTFSFAIPLIEK 931

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            L A++       +P  L +APTRELA QV ++ + +  K    VA   GG   + +   +
Sbjct: 932  LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKL--TVACFYGGTPYNGQIDLI 989

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            ++G  I+VGTPGR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 990  RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 1049

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----------VLVALSDR 231
                   +  A               +   +         +A             +    
Sbjct: 1050 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRRTQKAATTVEHLAIECHWSQRAA 1109

Query: 232  DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                V  +        IVFC T+   +      +          G++ Q++R   L+  R
Sbjct: 1110 VIGDVIQVYSGSHGRTIVFCETKKDANELALNASIKQDCQSLH-GDIPQKQREITLKGFR 1168

Query: 292  DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            +G  +V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    + 
Sbjct: 1169 NGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRK 1228

Query: 352  MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
             + +   + ++A ++      P+   I +   +DA R L D +   +I   ++    ++ 
Sbjct: 1229 EENQLRYVEQKAGITFKRVGVPTATDIIKASSKDAIRCL-DSVPQSAIDYFKESAQLLIE 1287

Query: 409  AKHDPEKIAAGFLRIHRA 426
             K     +AA    I  A
Sbjct: 1288 EKGPVNALAAALAHISGA 1305


>gi|90407101|ref|ZP_01215290.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
 gi|90311823|gb|EAS39919.1| ATP-dependent RNA helicase SrmB [Psychromonas sp. CNPT3]
          Length = 465

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 189/388 (48%), Gaps = 15/388 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + +A+S  G+   TS+Q   + P + E+D++ SA TG+GKT+AF L  
Sbjct: 4   ITSFDALELDESLLDAISLMGHTRPTSIQLLAIPPAMDEQDIMASAPTGTGKTLAFLLPA 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    R     +   L + PTRELA+Q+    + L   T +VV   IGGVS   + 
Sbjct: 64  IQRLIDFPRR--KGGSARILILTPTRELAMQISGVAQQLTQATSLVVGNIIGGVSYQEQE 121

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + +   IV+ TPGRL ++I  +  +   +++++LDEAD MLD+GF ++++ I   +  
Sbjct: 122 AIITDNVDIVIATPGRLMEYIDAEAFDCREVESLILDEADRMLDMGFINEMDRIAGETRW 181

Query: 179 KRRMLMFSATISPAITTLA-----------KNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           +++  +FSAT+                              I          +++  L+A
Sbjct: 182 RKQTSLFSATLEGKGLRDFSRDVLNEPLALNAIISRRESGKINQWIHLADSPEHKLKLLA 241

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +D           AK  IVF  TR  ++     LAE       L GE+ Q++R+ AL
Sbjct: 242 ELLKDENNDADSEEKIAKKIIVFVKTRERLAFLVSQLAELNIHCNYLRGEMDQEKRTLAL 301

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              ++ +  + IATDVAARGID+ D+  VI+ +L  + +  +HR GRT R G+KG ++ +
Sbjct: 302 AQFKEDKVNILIATDVAARGIDVADITHVINYDLPRSADIYVHRIGRTARGGKKGTAISL 361

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSV 375
           I  +      ++ R  +  +      ++
Sbjct: 362 IEAHDIDMLAKIERYTDQVLKRRIIKTL 389


>gi|332025244|gb|EGI65418.1| Putative ATP-dependent RNA helicase DDX10 [Acromyrmex echinatior]
          Length = 795

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/394 (25%), Positives = 182/394 (46%), Gaps = 16/394 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +V  ++L+E  YV +T +Q+  +   L+  D+L +A+TGSGKT+AF + +   
Sbjct: 42  FSDLPLSRVTLKSLTENNYVEMTDIQKQSIGLALQGNDILGAAKTGSGKTLAFLIPILEI 101

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +   ++      +L I PTRELA Q+   L  +     +   + IGG  +  E++ +
Sbjct: 102 LYCKQ--WTRLDGLGSLIITPTRELAYQIYETLRKVGQYHSISAGLIIGGKDLKFEKKRM 159

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+      L         N  +++ +VLDEAD  LD+GF   +  I+++ P KR+
Sbjct: 160 DQCNVIICTPGRLLQHMDENPLFNCVNMQILVLDEADRCLDMGFEKTMNSIIENLPPKRQ 219

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++             V V+  S +     +    ++ +L D+   + + +
Sbjct: 220 TLLFSATQTKSVKDLARLSLKDPLYVSVHEHSAHTTPEGLQQSYIICSLEDKLAMLWSFI 279

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE--RSNALQMMRDGRARV 297
           R H  +  IVF S+   V    +        +  L+   +  +  R N  +     +  V
Sbjct: 280 RNHVKQKIIVFFSSCKQVKYIYEAFCRLRPGISLLALYGTLHQLRRMNIYESFCKKQHAV 339

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR+GRT R    G S+ V+  + +   E
Sbjct: 340 LFATDIAARGLDFPTVNWVVQMDCPEDVNAYIHRAGRTARFKSGGESLLVLLPSEEMIIE 399

Query: 358 RL--------FREANVSVVWEPAPSVEAIRERDA 383
           RL          + N + +  P   +EA+  RD 
Sbjct: 400 RLKQRKIPINMIKINPNKLQSPHRKLEALLARDV 433


>gi|297204692|ref|ZP_06922089.1| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148758|gb|EDY54797.2| DEAD-box RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 486

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 192/379 (50%), Gaps = 7/379 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P+ +  AL+ +G      +Q A L   L  +D L   +TGSGKT+AFGLAL
Sbjct: 57  VEAFADLDMPEPLLAALTAQGVSVPFPIQSATLPNTLAGRDALGRGRTGSGKTLAFGLAL 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+ 
Sbjct: 117 LAR--TAGQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVQLRLATVVGGMSIGRQA 173

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    
Sbjct: 174 NALRSGAEVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMADMGFMPQVTALLDQVRP 233

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       S +++  + V  +D+       
Sbjct: 234 EGQRMLFSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVSTMEHHVLHVHGADKHWTTTQ- 292

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 293 -IAAREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVL 351

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 352 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTR 411

Query: 359 LFREANVSVVWEPAPSVEA 377
           L   A +        S E 
Sbjct: 412 LMTAAGIMPKITQVRSGEE 430


>gi|42521938|ref|NP_967318.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574468|emb|CAE77972.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/354 (29%), Positives = 181/354 (51%), Gaps = 7/354 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  V+  AL++      T VQ   +   L   D++  AQTGSGKT+AF L+L +TL  +
Sbjct: 39  NLAPVLLPALTKMKISKPTPVQSQAIPASLDGSDIIAIAQTGSGKTLAFALSLLTTLQKK 98

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +          L + P+RE+A Q+ +    L A+  V V + IGG +  ++   L+   
Sbjct: 99  PEA-------RGLILVPSREMAQQIYKVFLELCAEMPVSVCLAIGGTTGSKQANQLKKNP 151

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGR+ DH+ G  L + +++ +VLDEAD MLD+GF   +  I  +    R+ +MF
Sbjct: 152 RLIIATPGRMNDHLSGNKLLLQNVEVIVLDEADRMLDMGFAPQLRTIQSTLRGPRQTMMF 211

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SA+    + ++A+ + K  V +  + +     +   + VL       N  +         
Sbjct: 212 SASFGSNVESIAQLFMKPDVVMVRSEKAEAPVESLKQKVLFLDRSMKNDRLLDELNATRG 271

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             IVF   + +       L E+ F    + G LSQ +R+  ++  R+G  R+ +ATD+ A
Sbjct: 272 GVIVFTGNQENCEAVGNYLKEYGFSTDLIHGGLSQGQRNRVVRGFREGEIRIVVATDLLA 331

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RG+D+P ++ V++ +L    E+ LHR GRT RAGR G ++  +  +  R   ++
Sbjct: 332 RGLDVPHVDHVVNFDLPFQSEDFLHRIGRTARAGRGGEAITFVTPSDTRMYAKI 385


>gi|71904068|ref|YP_280870.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
 gi|71803163|gb|AAX72516.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
          Length = 447

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 199/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +       + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA      +   
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERNAKK 444


>gi|302506493|ref|XP_003015203.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
 gi|291178775|gb|EFE34563.1| hypothetical protein ARB_06326 [Arthroderma benhamiae CBS 112371]
          Length = 816

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 185/401 (46%), Gaps = 13/401 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 49  IESFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 109 LENLY--RKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +++ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 167 ERLGRMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPK 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+  + +   S +    V+  L D+ + + 
Sbjct: 227 ERQTMLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVTPLPDKLDTLW 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R       IVF S+   V    +   +    +  L     Q++ +           +
Sbjct: 287 SFIRSSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P    
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEI 406

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
               RL ++    +  E   ++ A +++  +  LQ+  F D
Sbjct: 407 GMLSRLEQK---KIPIEKI-NIRANKQQSIKHQLQNMCFKD 443


>gi|227832522|ref|YP_002834229.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183610|ref|ZP_06043031.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453538|gb|ACP32291.1| putative ATP-dependent RNA helicase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 462

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 180/365 (49%), Gaps = 3/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL++ G     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D  
Sbjct: 24  EICDALADNGITRTFAIQELTLPIALNGQDLIGQARTGMGKTYGFGVPLLDRVFDDADIP 83

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL IAPTRELA+QV  +LE   A   + V    GG     +   +++GA +VV
Sbjct: 84  ELDGTPRALVIAPTRELAIQVSGDLELAAANLPLSVVTLCGGRPYEEQITQIESGADVVV 143

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  + K L+  H+  +VLDEADEMLDLGF  DIE IL          M  +  
Sbjct: 144 GTPGRLLDLCQKKHLSFDHVSVLVLDEADEMLDLGFLPDIEKILSLLHGNPHQTMLFSAT 203

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK---N 246
            P           +      A              +   + R + I  + +   A+    
Sbjct: 204 MPGPIVTLARTFLEKPVHIRAESGDAQHTHSSTRKVTFQAHRMDKIAVLGKALQAEGRGR 263

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S +   + LA+  F+V A+ G+L Q+ R  +L   R+G   + +ATDVAAR
Sbjct: 264 TIIFTRTKRSAAAVAEELAQRGFRVGAVHGDLDQKARERSLNTFREGTVEILVATDVAAR 323

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++  +   + + +  E ++ 
Sbjct: 324 GIDIEDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDELSKWQVINDELDLG 383

Query: 367 VVWEP 371
               P
Sbjct: 384 QPEPP 388


>gi|226943260|ref|YP_002798333.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
 gi|226718187|gb|ACO77358.1| ATP-dependent RNA helicase RhlB [Azotobacter vinelandii DJ]
          Length = 521

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ S LL  
Sbjct: 139 DLDPRLMHAIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISIISQLLQT 198

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V++   G     + ++  + 
Sbjct: 199 PPPKERYMGEPRALIIAPTRELVVQIAKDALALTRYTGLNVMSFVGGMDFDKQLKQLEEK 258

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 259 FCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPYKGERQ 318

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  E+     ++     VA SD+   + N++  
Sbjct: 319 TLLFSATFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHVYAVAGSDKYRLLYNLVTR 378

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+GR RV +AT
Sbjct: 379 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIKVLEGFREGRIRVLVAT 438

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG KG S+    ++       +  
Sbjct: 439 DVAGRGIHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGTSISFAGEDDAFALPPIEA 498

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 499 LLGRKIDCEIPPA 511


>gi|224057083|ref|XP_002193182.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Taeniopygia
           guttata]
          Length = 622

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 186/396 (46%), Gaps = 17/396 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 208 FEHCGFPETLNNNLKNSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMK 267

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
           +L E +       P AL +APTRELA+Q+  + +  +     +   + +GG+ +  +   
Sbjct: 268 VLKETE------TPSALILAPTRELAIQIESQAKELMAGLPNMRTVLLVGGLPLPPQLHR 321

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL + ++   + +  +K +V+DE D ML +GF+  +  IL+      
Sbjct: 322 LRQSVKVIIATPGRLLEILKQSSVQLHGIKIIVVDEVDTMLKMGFQQQVLDILEDISHDH 381

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI   I  LA     + VR+ I  +N   S++          +   +   I+N
Sbjct: 382 QTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 441

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      Q  A+  E SQ ER++ LQ +   +  V
Sbjct: 442 DNKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTAMHSEKSQVERTDILQGLLQEKYEV 501

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G  G ++  I  N ++   
Sbjct: 502 IVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 561

Query: 358 RLFREANVSVVWEPA-----PSVEAIRERDAQRILQ 388
            + +    +    P      P +   + R+ QR+ Q
Sbjct: 562 DVVKRVKPTGTILPPQLLNSPYLHDQKRREQQRLKQ 597


>gi|212539820|ref|XP_002150065.1| DEAD box  RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
 gi|210067364|gb|EEA21456.1| DEAD box RNA helicase (Hca4), putative [Penicillium marneffei ATCC
           18224]
          Length = 819

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/400 (24%), Positives = 190/400 (47%), Gaps = 10/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +P        L+   + +LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 48  LESFSELPLSDPTTSGLAASHFKSLTDIQSRSIPYALKGRDILGAAKTGSGKTLAFLIPV 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      A+ ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LENLY--RKKWTEYDGLGAIVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGGKSLKEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +   L++ +L+ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHLDQTAELDVYNLQMLVLDEADRIMDMGFQKTVDAIVEHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT +  ++ LA+   +D   V +     +   S +    ++  L ++ + + 
Sbjct: 226 TRQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYIITPLPEKLDTLF 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R +     IVF S+   V    + L      +  L     Q++           + +
Sbjct: 286 SFIRSNLKSKTIVFMSSGKQVRFVYESLRHLQPGIPLLHLHGRQKQGGRLDITTRFANSK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
             V  +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P   +
Sbjct: 346 HAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERNGRAVLFLDPSEEE 405

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
              +RL  ++  +  +   A   ++++++      +DP  
Sbjct: 406 GMLKRLEQKKVPIERINVKAKKQQSVKDQLQNMCFKDPEL 445


>gi|212544462|ref|XP_002152385.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210065354|gb|EEA19448.1| DEAD/DEAH box RNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 593

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 171/371 (46%), Gaps = 26/371 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + +   GY   T +Q   +   L  +D+L  AQTGSGKT A+ + + S L+ + 
Sbjct: 136 LHPIMEKNVRLCGYTIPTPIQAYGIPAILEGRDLLAVAQTGSGKTAAYLVPILSKLMGKA 195

Query: 67  DRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +                    PL L I PTRELA Q+  E   L  ++     V  G
Sbjct: 196 KKLAAPRPNITEGFEPKVHAVRAEPLVLVIVPTRELACQIFDEARRLCYRSMFRPCVAYG 255

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDI 169
           G  V  +R +LQ G  I++GTPGRL D +    + ++  ++  V+DEADE+L+  +  + 
Sbjct: 256 GGPVSHQRMELQKGCDILIGTPGRLIDFMGQPHVLSLRRVRYTVIDEADELLNYDWETEF 315

Query: 170 EF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                    +     R M+  +           K  +   VR+ +      H++I+ R  
Sbjct: 316 TQLLSGGDSNEDADHRYMMFSATFNKTCRQVAKKYLEHGYVRIRVGRLGSSHANIEQRVY 375

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
               S ++  + ++L        ++F +T+A   R    L        ++  + +Q+ER 
Sbjct: 376 YADDSVKEQCLYDLLLSMPPARTLIFVNTKAQADRLDDFLYNRGLPSTSIHSDRTQRERE 435

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSGRTGRAGR 340
           +A+   R G+  + IAT V++RG+D+ ++  VI+ +L S+     +  +HR GRT R G 
Sbjct: 436 DAMSAFRSGKTPILIATGVSSRGLDIKNVMHVINFDLPSSDQGGIDEYVHRIGRTARIGN 495

Query: 341 KGMSVFVIPQN 351
           +G++  +   +
Sbjct: 496 EGIATSLYNHD 506


>gi|154345772|ref|XP_001568823.1| DEAD box RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066165|emb|CAM43955.1| putative DEAD box RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 654

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 163/370 (44%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +   
Sbjct: 166 LNAHIVSALEQEFKFTELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRS 225

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
              F P++   A+ I PTREL +Q+   L  L       V                +   
Sbjct: 226 G--FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGQSRNQEGFKLAN 283

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +V      L         +  +L  + +DEAD +LD GF +D+  I+   PK R+ 
Sbjct: 284 GVMIVVASPGRLLDHLKLTADWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQT 343

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNIL 239
            +FSAT +  +  LA+               +  + +D      V+ A   R   + + +
Sbjct: 344 FLFSATQTTRVEQLARISFHKTPVFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFV 403

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V  
Sbjct: 404 RKNLKKKIIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLF 463

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++  +    +     L
Sbjct: 464 TTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELFLRYL 523

Query: 360 FREANVSVVW 369
           + +ANV V  
Sbjct: 524 YDDANVRVNE 533


>gi|118092587|ref|XP_001232052.1| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 713

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/514 (26%), Positives = 223/514 (43%), Gaps = 38/514 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  VQ    NP    KDV+  A+TG+GKT +F + L   
Sbjct: 135 FSNFPISKGTIQLLQARGVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIPLIEK 194

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A++       +P  L +APTRELA QV ++ + +  K    VA   GG   + +   +
Sbjct: 195 LQADSQERRRGRSPKVLVLAPTRELANQVAKDFKDITRKL--TVACFYGGTPYNGQIDLI 252

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 253 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 312

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----------VLVALSDR 231
                  +  A               +   +         +A             +    
Sbjct: 313 EDNPQTLLFSATCPNWVYDVAKKYMKSKYEQVDLIGRKTQKAATTVEHLAIECHWSQRAA 372

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        IVFC T+   +      +          G++ Q++R   L+  R
Sbjct: 373 VIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQDCQSLH-GDIPQKQREITLKGFR 431

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    + 
Sbjct: 432 NGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRK 491

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            + +   +  +A ++      P+   I +   +DA R L D +   +I+  ++    ++ 
Sbjct: 492 EENQLRYVEVKAGITFKRVGVPTATDIIKASSKDAIRCL-DSVPQTAIEYFKESAQLLIE 550

Query: 409 AKHDPEKIAAGFLRIHRAG------------------LCAPEEITPVSLVSGRDRFR-DD 449
            K     +AA    I  A                   L   EEI  +S V  R R +   
Sbjct: 551 EKGPVNALAAALAHISGATSIEQRSLLNSDVGFVTMVLRCSEEINNMSYVWRRLREQLGG 610

Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARW 483
               KV        +    F + V  ++  E RW
Sbjct: 611 DVDRKVNRMRFIKGRMGVCFDIPVADQKDIEERW 644


>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 547

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/381 (31%), Positives = 190/381 (49%), Gaps = 14/381 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E   V   ++QE  L   L  +DV+  A+TG+GKT+ FG+ +  
Sbjct: 64  TFAELGVRPEIVSALAENDIVRTFAIQELTLPLALDGEDVIGQARTGTGKTLGFGVPMLQ 123

Query: 61  TLLAENDRFS----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            +    ++ +              P AL + PTREL VQV R++       GV V    G
Sbjct: 124 RITPPGEQPAATAEGEAADRTKDVPQALVVVPTRELCVQVARDIAAAGKNLGVRVVAIYG 183

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   +   L+ G  ++VGTPGRL D    + L +  +KA+VLDEADEMLDLGF  D+E
Sbjct: 184 GRAYEPQLEALRKGVDVIVGTPGRLLDLAEQRHLVLGRVKALVLDEADEMLDLGFLPDVE 243

Query: 171 FILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            IL   P++R  ++FSAT+   I     A   +   +R   A +   H            
Sbjct: 244 RILRMLPEQRHTMLFSATMPGPIVQLSRAFLTRPTHIRAEEADQGSIHERTKQLVYRAHA 303

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            D+   +  +L+      +++F  T+ +  R    LAE  F   A+ G+L Q  R  AL+
Sbjct: 304 MDKVELVTRVLQAKDRGLSMIFTRTKRTAQRVADDLAERGFAAAAVHGDLGQGAREQALR 363

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R  +  V +ATDVAARGID+  +  V++ +   + +  +HR GRTGRAGR+G++V ++
Sbjct: 364 AFRAEKVDVLVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVTLV 423

Query: 349 PQNMQRRAERLFREANVSVVW 369
             +   R + +  + N+ +  
Sbjct: 424 DWDEIPRWKLISEDLNLGMPE 444


>gi|299533009|ref|ZP_07046396.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
 gi|298719233|gb|EFI60203.1| hypothetical protein CTS44_19497 [Comamonas testosteroni S44]
          Length = 469

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 139/406 (34%), Positives = 208/406 (51%), Gaps = 14/406 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +   
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L   N R+    A  AL + PTRELA QV  E+  L   +  + V    GGV    +   
Sbjct: 76  L---NPRW---FAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIAS 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAHIVVGTPGR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R
Sbjct: 130 LENGAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADR 189

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I +LA  + +D   V   +       I  R   V   D+ + +  +L 
Sbjct: 190 QTLLFSATYPDGIASLASRFMRDPQTV-KVATQHSAGKIAQRWYEVGARDKVDTVAKLLA 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   +++I FC+T+         L    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++  +      ++ 
Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +    +  + P   VE +       +L  P+    I G  K+ +  
Sbjct: 369 QLQGRASQFFP---VEELTPAAGGELL-PPMMTIQIIGGRKEKIRA 410



 Score = 46.5 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 6/118 (5%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E +A   + +   G     E     L     +F          GG            +
Sbjct: 347 DAEGLALNLVSMDEMGSVGKIE----QLQGRASQFFPVEELTPAAGGEL--LPPMMTIQI 400

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             G K+K  A  +M  +C   G +R+ IG I V    T+V V           +   K
Sbjct: 401 IGGRKEKIRAGDVMGAMCADFGYSREQIGKISVNDFSTYVAVDRKIASAACAKLNGGK 458


>gi|323524408|ref|YP_004226561.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1001]
 gi|323381410|gb|ADX53501.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
          Length = 467

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 16  LPAAALANLTQLGYVEMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +   A  A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 73  ---ARKFAVQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  ++   PK+R+ L+F
Sbjct: 130 HIVVGTPGRIMDHLERGSLPLQSLNTLVLDEADRMLDMGFFDDIATVVRQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I            +    +E    + I  R   V+  +R +A+  +L ++   
Sbjct: 190 SATYPEGI-VKLSQQFLRNPKEVKLAERHDDTKIRQRFYEVSEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STLAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGGIEQAQKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     + +         L  P+    I G  K+ + 
Sbjct: 369 EVEWHKLSELTSTS----NEPLLPPMETLQILGGRKEKIR 404



 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV-DLLR 522
                  +  G K+K     ++  L   +G     IG I V    T+V V      + +R
Sbjct: 388 PPMETLQILGGRKEKIRPGDVLGALTGEAGFAGSQIGKINVTEMSTYVAVERSIAREAVR 447

Query: 523 R 523
           +
Sbjct: 448 K 448


>gi|296130315|ref|YP_003637565.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
 gi|296022130|gb|ADG75366.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
           20109]
          Length = 598

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 184/371 (49%), Gaps = 7/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I  AL+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L   ++A 
Sbjct: 54  DVRPEIVAALAAAGITQPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLHRVIAP 113

Query: 66  N----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                DR      P AL + PTRELAVQV  +L        V +    GG +   +   L
Sbjct: 114 GEDGYDRLPAPGEPQALVVVPTRELAVQVAGDLAMASTGRKVRIVQVYGGRAYEPQVEAL 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q GA +VVGTPGR+ D +  + L + H   VVLDEADEMLDLGF  D+E +L ++P  R 
Sbjct: 174 QRGADVVVGTPGRMIDLLNQRHLRLKHATEVVLDEADEMLDLGFLPDVEKLLAATPPNRH 233

Query: 182 MLMFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++FSAT+     A+     +            E +   +I   A      D+   +  I
Sbjct: 234 TMLFSATMPGAVVAMARRYMSQPTHIRASAPDDEGQTVKNIKQVAYRAHALDKVELLARI 293

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    IVF  T+ + ++    L E  F   A+ G+L Q  R  AL+  R G+  V 
Sbjct: 294 LQARGRGLTIVFARTKRTAAKVADELVERGFAAGAIHGDLGQGAREQALRAFRHGKVDVL 353

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  V++ +   + +  LHR+GRTGRAG KG +V  +  +   R   
Sbjct: 354 VATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDIPRWGL 413

Query: 359 LFREANVSVVW 369
           + +   + +  
Sbjct: 414 IDKALGLGIPE 424


>gi|255961279|ref|YP_346703.3| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf0-1]
 gi|77381201|gb|ABA72714.1| ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 492

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 190/384 (49%), Gaps = 6/384 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL   
Sbjct: 109 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTP 168

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 169 PPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARH 228

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 229 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 288

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I   N  + +++     VA +D+   + N++  +
Sbjct: 289 LLFSATFTDDVMNLAKQWTTDPAIVEIEVTNVANENVEQHIYAVAGADKYKLLFNLVNDN 348

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  IVF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 349 GWERVIVFANRKDEVRRIEERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 408

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +  +
Sbjct: 409 VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEK 468

Query: 363 ANVSVVWEPAPS--VEAIRERDAQ 384
               +  E  P+  + A+  +  Q
Sbjct: 469 LGRKISCETPPTHLLRAVERKRPQ 492


>gi|88802153|ref|ZP_01117681.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
 gi|88782811|gb|EAR13988.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
           [Polaribacter irgensii 23-P]
          Length = 452

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/409 (27%), Positives = 186/409 (45%), Gaps = 18/409 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  A+ + G+   T +QE   +     KDV+  AQTG+GKT A+ L +  
Sbjct: 2   TFEDLDLSNQLQYAIDDLGFERPTPIQEQAFSVVRSGKDVVGIAQTGTGKTFAYMLPILR 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L      FS    P  L + PTREL +QV  ++  L       V    GG +++ +R+ 
Sbjct: 62  DL-----PFSKQQHPRVLILVPTRELVLQVVEQITQLSKYINTRVLGVYGGANINTQRQA 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +Q G  I+V TPGRL D      L +  +  +V+DE D MLDLGFR  +  I D  P+KR
Sbjct: 117 IQQGQDIIVATPGRLYDLAISNSLKMKSIHKLVIDEVDVMLDLGFRFQLMNIFDVIPEKR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV---LVALSDRDNAIVN 237
           + ++FSAT++  +  L  ++ K+  ++++A       +I+  +               + 
Sbjct: 177 QNILFSATMTEDVDALIYDFFKNPEKISVAVSGTPLDNIEQVSYATPNFFTKVNLLHTLL 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             R    K  I     R +   F  +      ++  +    +Q  R  +++   +G+ R+
Sbjct: 237 KDRETFHKVLIFVGFKRTADLLFKHLEEAFNDEICVIHSNKTQNYRIRSIRQFDEGKNRI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDV ARG+D   +  VI+ +    PEN +HR GRTGRA + G ++       Q    
Sbjct: 297 LLATDVMARGLDFDKVSHVINFDTPDFPENYMHRIGRTGRAEKAGKTILFSTPKEQEAKG 356

Query: 358 RLFREANVSVVWEPAPS--------VEAIRERDAQRILQDPLFLDSIQG 398
            +    N  +     P          E  R R+ Q I ++   L+ + G
Sbjct: 357 GIEVLMNYEIPLLELPEEVEVSTMLTEDERPREDQGISKNRTSLEYVPG 405


>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
 gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
          Length = 558

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 190/388 (48%), Gaps = 11/388 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   IP+ I + L ++G    + +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 108 ITTFKEMKIPRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPM 167

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLY------AKTGVVVAVCIG 110
               L E  +        P  L ++P+RELA Q    +              +   + IG
Sbjct: 168 VLFALEEEKKLPIIQGEGPFGLILSPSRELARQTYDLVNSFTDSLAKDGFPKLRTLLAIG 227

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  + +  + G H++V TPGRL + ++ K +N +  K + LDEAD ++D GF DDI 
Sbjct: 228 GIDMREQEQVFRKGIHMIVATPGRLLELLQKKKINFNLCKYLGLDEADRLIDFGFEDDIR 287

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +LD    +R+ L+FSAT+   I   A++     V VN+      + ++      V    
Sbjct: 288 SVLDHFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEA 347

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+       ++FC  +  V    + L     + V++ G+ SQ+ER  A++  
Sbjct: 348 KIVYLLECLQKTPPP-VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQEEREGAIKAF 406

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G+  V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G KG++   I +
Sbjct: 407 REGKKDVLVATDVASKGLDFPDIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINK 466

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAI 378
                     +   +    +  P++  I
Sbjct: 467 TNTESLLLDLKYLLIEAKQKVPPALLEI 494


>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 834

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 205/463 (44%), Gaps = 16/463 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +  A+ ++GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 30  FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P     AL ++PTR+LA Q  +  + L   T + V++ +GG S+  +  +L
Sbjct: 90  L----KQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEEL 145

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G  +++ TPGRL   +          ++ VV DEAD +  +GF + +  IL    + R
Sbjct: 146 TKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENR 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   ++   V +  EN+   D+    + V   ++  A++ ++R
Sbjct: 206 QTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLRLSFLTVRPEEKYAALLYLVR 265

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            H    +  ++F ST+  V     +      +     G++ Q  R   +   R  +  + 
Sbjct: 266 EHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLL 325

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+AARGID+P L+ VI+ +    P+  +HR GR  RAGR G +   +          
Sbjct: 326 IVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGSAYSFVTPEDVPYMLD 385

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS-----IQGDEKKMVDVLLAKHDP 413
           L     +S    PAP+ + + +   + + +    +DS      +  +K +  +     + 
Sbjct: 386 L--HLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREM 443

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
              +A    + R    A    +       ++  R      + G
Sbjct: 444 IDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREG 486


>gi|320547900|ref|ZP_08042183.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
 gi|320447440|gb|EFW88200.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           equinus ATCC 9812]
          Length = 447

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 202/467 (43%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I EAL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIREALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           N+          +  AP+RELA Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  NNNV------QVVITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 AQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAI 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         LA +  +V  + G++  +ER   +  ++       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLASNGLKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --LGIKFVP-------------KMLKNGEFKDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----EEKRKRERRAANRAKGRAERKARKQTF 447


>gi|302850370|ref|XP_002956712.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
 gi|300257927|gb|EFJ42169.1| hypothetical protein VOLCADRAFT_77220 [Volvox carteri f.
           nagariensis]
          Length = 648

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 177/385 (45%), Gaps = 22/385 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P  +   L+ +G    T +Q   L   L  +D++  A TGSGKT+ F L +  
Sbjct: 204 MK----LPPAVLRVLAGKGIKKPTQIQMQGLPVALSGRDMIGIASTGSGKTLVFALPMVL 259

Query: 61  TLLAENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGV 112
             L E  R        P+ + I P+RELA Q     +      G      +   +CIGG+
Sbjct: 260 IALQEEMRMPLGQNEGPIGMVICPSRELATQTYEIADMYCKALGADRYPEIRAMLCIGGI 319

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG-FRDDIEF 171
                   ++ G H VV TPGRL D +  + +N+   + + LDEAD M+D   F DD+  
Sbjct: 320 DAKPMYETIRRGVHAVVATPGRLKDLLHKRRMNLDVCRFLCLDEADRMVDQVGFEDDVRD 379

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDA---VRVNIASENRQHSDIDYRAVLVAL 228
           IL     +R+ LMFSAT+   I   A++   D         A     + D+      V  
Sbjct: 380 ILSFFRGQRQTLMFSATMPAKIKAFAESALVDPLLVRFHTAAVWCAANMDVIQEVEYVKE 439

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +   ++  L+       ++F   +  V    + L     + VA+ G+ +Q++R  A+ 
Sbjct: 440 EAKLPYLLECLQKTAPP-VLIFAENKRDVDAIHEYLMVQGVEAVAVHGDKAQEDRHAAIH 498

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   V +ATDVA++G+D PD++ VI+ ++    EN +HR GRTGR G+ G++   I
Sbjct: 499 QFKAGEKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRCGKTGVATTFI 558

Query: 349 -----PQNMQRRAERLFREANVSVV 368
                 + +    + L REA   V 
Sbjct: 559 NTKQCSETILLDLKHLLREAKQRVP 583


>gi|284992633|ref|YP_003411187.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065878|gb|ADB76816.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 611

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 187/368 (50%), Gaps = 4/368 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL+E G     ++QE  L   L   D++  A+TG+GKT+ FG+ +   ++  
Sbjct: 114 DVHPDVVAALAEAGITRTFAIQELTLPLALAGNDLIGQARTGTGKTLGFGVPMLQRVVPP 173

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +       P AL + PTREL VQV R+L    +K G+ V    GG +   +   LQ G 
Sbjct: 174 AEGGDGV--PQALVVVPTRELCVQVSRDLATAGSKRGIRVQAIYGGRAFEPQVAALQAGV 231

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVVGTPGRL D  +   L +  +K +VLDEADEMLDLGF  DIE IL   P KR+ ++F
Sbjct: 232 EIVVGTPGRLLDLAQRGDLILGKVKVLVLDEADEMLDLGFLPDIERILAMVPDKRQTMLF 291

Query: 186 SATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           SAT+   I T   +   Q   +R +   E                 D+   +  +L+   
Sbjct: 292 SATMPGPIVTLSRSFMTQPTHIRAHGNDEGSTVPQTTQFIYRAHNLDKPELLSRVLQARD 351

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VFC T+ +  +    L E  F   A+ G+L Q  R  AL+  R G+  V +ATDV
Sbjct: 352 RSLVMVFCRTKRTAQKVADELVERGFAAAAVHGDLGQGAREQALRAFRSGKVDVLVATDV 411

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  V++ +   + +  LHR GRTGRAG +G++V ++  +   R + + +  
Sbjct: 412 AARGIDVTGVSHVVNYQCPEDEKTYLHRIGRTGRAGSEGVAVTLVDWDDIPRWQLINKAL 471

Query: 364 NVSVVWEP 371
            +     P
Sbjct: 472 ELDFTDPP 479


>gi|15675529|ref|NP_269703.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71911177|ref|YP_282727.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
 gi|13622729|gb|AAK34424.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
 gi|71853959|gb|AAZ51982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
          Length = 447

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 198/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +       + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEKLKD 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|328773869|gb|EGF83906.1| hypothetical protein BATDEDRAFT_15345 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 212/460 (46%), Gaps = 9/460 (1%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ   + P +  +D+L +A+TGSGKT+AF +     L     +F P +    L I+P
Sbjct: 1   MTEVQARSIPPAMTGRDILGAAKTGSGKTLAFLIPAIELL--HKLQFKPRNGCGVLIISP 58

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH-IRG 141
           TRELA+Q+    + L+        + +GG +   E   L  G +++V TPGRL DH    
Sbjct: 59  TRELALQIFGVAKELFEHHSQTFGILMGGANRKAEAEKLGKGVNLIVATPGRLLDHLQNT 118

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           K     +LK +++DEAD +L++GF +++  I+   P +R+ ++FSAT +  +  LA+   
Sbjct: 119 KSFIFKNLKMLIIDEADRILEVGFEEEMHKIIGLLPTERQTMLFSATQTTKVEDLARVSL 178

Query: 202 KDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
           K A       E++  +  +      V+     R   +   L+ +  K  IVF S+  SV 
Sbjct: 179 KKAPLYINVDEHKDMATNEGLEQGYVICPSEQRFLLLFTFLKKNLKKKIIVFFSSCNSVK 238

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              ++L      V+ L G+  QQ+R++      +  + V + TDVAARG+D+P ++ ++ 
Sbjct: 239 YHAELLNFIDIPVLDLHGKQKQQKRTSTFFEFVNAESGVLLCTDVAARGLDIPAVDWILQ 298

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE-A 377
            +   +P   +HR GRT RAG +G ++  +         R  + A V +     P  + A
Sbjct: 299 FDPPDDPREYIHRVGRTARAGGRGKALLFLLPTELGFL-RYLKHAKVPLNEYQFPPNKIA 357

Query: 378 IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-AGFLRIHRAGLCAPEEITP 436
             +   +R+++   +L+    D  +      A H  +KI   G L + R        + P
Sbjct: 358 NVQGQLERLIEKNYYLNRSAKDGYRSYLQAYASHSLKKIFDVGVLDLQRVAKAYGFTVPP 417

Query: 437 VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
              ++     + D R        R  +        S G +
Sbjct: 418 SVNLTMGASGKTDRRQQNKKQARRGMYGSKVGDKSSDGRQ 457


>gi|172056876|ref|YP_001813336.1| DEAD/DEAH box helicase domain-containing protein [Exiguobacterium
           sibiricum 255-15]
 gi|171989397|gb|ACB60319.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sibiricum
           255-15]
          Length = 450

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 190/391 (48%), Gaps = 13/391 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   + EAL +      T +Q  I+   L+ +D++  +QTG+GKT++F L +
Sbjct: 1   MNGFSHFDLHPFVVEALEDARIKKPTDIQSRIIPAALKGRDIIGQSQTGTGKTLSFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHR 116
              +  E           A+ +APTRELA Q+  EL+ +       +  ++  GG+   R
Sbjct: 61  VQNVNPELQEM------QAIIVAPTRELAWQIHEELKSILVKQPDYIKTSLITGGMDRER 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++    IV+GTPGR+ D  + + L    +K  ++DEAD+MLD+GF  +++ I  + 
Sbjct: 115 QIGRVKVSPQIVIGTPGRILDLFKEQALKPHFVKHYIIDEADQMLDMGFLPEVDRIAQAL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+K +M++FSATI   +    K Y  +    ++  + +    I +  V V   DR +  +
Sbjct: 175 PEKLQMMVFSATIPEKLQPFLKKYMNNPRYAHVDPKQQTAKKIVHHTVPVKHRDRSDLTL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       +VF +T+        +  E    V +L G+L  + R  A++ + + + +
Sbjct: 235 KLAKALNPYICLVFTNTKTEAIELEALFLEAGLNVGSLHGDLPARRRKQAIKEINEAKYQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             I TD+AARGID+  +  VI+  +  + +  +HR GRTGR  + G++  +   +     
Sbjct: 295 YVIVTDLAARGIDISGVSHVINHGIPKDLDFYVHRVGRTGRVDQDGLAYTLFEDHENGSI 354

Query: 357 ERLFREANVSVVWEPAPS--VEAIRERDAQR 385
            RL     +  +     S  V  ++ER   +
Sbjct: 355 NRLEDR-GIEFINVDVKSGQVSEVKERRRAK 384


>gi|225680133|gb|EEH18417.1| ATP-dependent RNA helicase dbp4 [Paracoccidioides brasiliensis
           Pb03]
          Length = 816

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 187/400 (46%), Gaps = 10/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +   + LS   +  LTS+Q   L   L+ +D+L +A+TGSGKT+AF + L
Sbjct: 48  VEAFADLPLSEASLDGLSASHFKTLTSIQAKALPHALKGRDILGAAKTGSGKTLAFLVPL 107

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 108 LELLY--RKQWTEYDGLGALVLSPTRELAIQIFEVLRKIGRHHSFSAGLVIGGKSLQEEQ 165

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    + + ++ +VLDEAD ++D+GF++ ++ I++  PK
Sbjct: 166 ERLGRMNILVCTPGRMLQHMDQTAAFDTNRIQLLVLDEADRIMDMGFQNTVDAIVEHLPK 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++ LA+   +D   +++     +   + +    ++  L ++ + + 
Sbjct: 226 ERQTMLFSATQTQKVSDLARLSLRDPEYISVHEAASSATPAKLQQNYIVTPLPEKLDTLW 285

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
           + +R       +VF S+   V    +        +  L     Q++ +           +
Sbjct: 286 SFIRSSLKSKIMVFFSSGKQVRFVYESFRHMQPGISLLHLHGRQKQGARVDITKKFSVAK 345

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ VI  +   + +  +HR+GRT R  R G +V  +  + + 
Sbjct: 346 HACLFATDIAARGLDFPAVDWVIQVDCPEDADTYIHRAGRTARYERNGRAVLFLEPSEEA 405

Query: 355 RAERLFREANVSVVWEPAPSVEA--IRERDAQRILQDPLF 392
              +   +  + +      + +   I+ +      +DP  
Sbjct: 406 AMLKRLEQKKIPIEKINVRTKKQQSIKHQLQNMCFKDPAL 445


>gi|195120383|ref|XP_002004708.1| GI20069 [Drosophila mojavensis]
 gi|193909776|gb|EDW08643.1| GI20069 [Drosophila mojavensis]
          Length = 521

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 135/479 (28%), Positives = 214/479 (44%), Gaps = 37/479 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G   +T +QE  + P L  KD + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLAKQLTKLGLKGVTPIQENCIPPILAGKDCIGAAKTGSGKTFAFALPILEKLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKFLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +        +  +  S+      ++ R +L A  DRD  ++        
Sbjct: 188 SATMKDFMKESSIFPISKDLMEWSQESDVATVETLEQRYLLCADYDRDMVLIEALRKFRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  LA    + V L G + Q+ER  AL   +    R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLASMEIENVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+++ +   P++++     
Sbjct: 308 TDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEAEINCKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
            DP+++ A + +  +  L                R R   RA                F
Sbjct: 425 KDPDEMEALYRKKQKEKL------------REIRRKRKQQRAEMSASEEGKAVLNDERF 471


>gi|322706999|gb|EFY98578.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           anisopliae ARSEF 23]
          Length = 714

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 184/415 (44%), Gaps = 34/415 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +PQ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 271 MRSWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL 330

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +         +    P AL +APTREL  Q+  E +      G      +GG S+  
Sbjct: 331 LVYISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEE 390

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NGA I+V TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD+ 
Sbjct: 391 QAFALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDAL 450

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------- 216
           P            +  +       +    +  + +                         
Sbjct: 451 PVSNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGN 510

Query: 217 -------SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                   +     +      +      + +   A   IVF + + +     + +    +
Sbjct: 511 AGEAVDTVEQRVEFISGEDRRKKRLQEILSKNDFAPPIIVFVNIKRNCDAVARDIKSMGW 570

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  ++++ E+  
Sbjct: 571 STVTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYT 630

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           HR GRTGRAG+ G+++  +            ++  ++++S V E     EA + +
Sbjct: 631 HRIGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSKSSISKVPEELKRHEAAQSK 685


>gi|74006740|ref|XP_861512.1| PREDICTED: similar to DEAD-box protein 3, X-chromosomal
           (Helicase-like protein 2) (HLP2) (DEAD-box, X isoform)
           isoform 10 [Canis familiaris]
          Length = 640

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/385 (27%), Positives = 177/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   +    Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238

Query: 59  ASTL-----------LAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S +           + EN R+      P++L +APTRELAVQ+  E      ++ V   
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 298

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  + ++ RDL+ G H++V TPGRL D +    + +   K +VLDEAD MLD+GF 
Sbjct: 299 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFE 358

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
             I  I++      + +  +                  +      +  Q    D+    +
Sbjct: 359 PQIRRIVEQDTMPPKGVRHT-----------------MMFSATFPKEIQMLARDFLDEYI 401

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            L+       +          +VF  T+         L    +   ++ G+ SQ++R  A
Sbjct: 402 FLAVGRVGSTSENITQKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 461

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R G++ + +AT VAARG+D+ +++ VI+ +L S+ E  +HR GRTGR G  G++  
Sbjct: 462 LHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 521

Query: 347 VIPQ---NMQRRAERLFREANVSVV 368
              +   N+ +    L  EA   V 
Sbjct: 522 FFNERNINITKDLLDLLVEAKQEVP 546


>gi|78049510|ref|YP_365685.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123584009|sp|Q3BNH8|RHLB_XANC5 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|78037940|emb|CAJ25685.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 573

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 213/471 (45%), Gaps = 9/471 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE-----KKMVDVLLAKHDPEKI 416
                +  EP  S        A R+  +    D   GD      ++  +   A+      
Sbjct: 375 YIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAREQRAAEEQRRGG 434

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
                   R+G          +   G+ R R   R       +  + +   
Sbjct: 435 GRSGSGGSRSGSGGGGGRREGAGADGKPRPRRKPRVEGQAPATAASTEHPV 485


>gi|294497160|ref|YP_003560860.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
 gi|294347097|gb|ADE67426.1| ATP-dependent RNA helicase [Bacillus megaterium QM B1551]
          Length = 401

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 201/386 (52%), Gaps = 8/386 (2%)

Query: 1   MKIF-ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M  F E +   + EA  + G+   T++Q   ++  L  KDV+  + TG+GKT+A+ L + 
Sbjct: 1   MSQFIETLQPFLQEAWKKAGFNEPTAIQTKAISEILANKDVIGESPTGTGKTLAYLLPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +              A+ +A + EL +Q+  E++     +G+  A  IGG ++ R+  
Sbjct: 61  HRIQPGPSHI------QAVILASSHELVMQIHGEIQTWSQGSGISSAAFIGGANMKRQLE 114

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+   +I+VGTPGRL + I+ K L +  +K +V+DEAD++        ++ I+  +   
Sbjct: 115 KLKKRPNIIVGTPGRLNELIKMKKLKMHEVKTIVIDEADQLFVPEHFQTVQQIVKMALSD 174

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++L+FSAT+S    +LAK+     + + +  +    S +++  +     D+ + +  ++
Sbjct: 175 RQILVFSATVSERTKSLAKDMMNHPLEIEVGRDELPASKVEHVYIKSEARDKVDVLRKLV 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    K A+ F     ++  F + L     +  +L  E  +++R+  ++  R G   V +
Sbjct: 235 RQEQMK-ALAFFKGIDTLIEFEEKLTFKRVEAGSLHSETKKEDRATTIKGFRKGDFPVLL 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L  VIH ++  + +  +HRSGRTGR+G +G  + ++ +  +R  +++
Sbjct: 294 ATDVAARGLDIKGLTHVIHIDVPQDADQYVHRSGRTGRSGAEGTVISLVTEREERNLKQI 353

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
            RE  +S+V +     E + +   ++
Sbjct: 354 ARELQLSLVKKELYMGEIVDDGTKEQ 379


>gi|198424759|ref|XP_002127650.1| PREDICTED: similar to Ddx10 protein [Ciona intestinalis]
          Length = 736

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/452 (24%), Positives = 199/452 (44%), Gaps = 10/452 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  P        L + G+V+LT++Q A + P +  KD+L +A+TGSGKT+AF + +
Sbjct: 47  VEKFEEFPFATKTKAGLRKAGFVSLTAIQRAAIKPAMLGKDILGAAKTGSGKTLAFIIPI 106

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   N  ++    P AL I+PTRELA Q+   L+ +  K      + IGG +V  E 
Sbjct: 107 LECLHKHN--WNSLDGPGALVISPTRELAFQIFEVLKKVGGKHNFSAGLLIGGNNVKEEA 164

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     I+      L         ++++LK ++LDEAD +LD+GF+  ++ I+++ P 
Sbjct: 165 HSVGKTNIIICTPGRLLQHMDTTSYFHMNNLKMLILDEADRILDMGFKTTLDAIIENLPS 224

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           +R+ L+FSAT + ++  LA+   +D   +++ SE +  +      R +   L D+ N + 
Sbjct: 225 ERQTLLFSATQTKSVKDLARLSLRDPAYISVHSEAKHSTPQGLTQRFICCELKDKLNVLF 284

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R H     +VF S+   V        +       L       +       Q     +
Sbjct: 285 SFIRNHQKSKCLVFVSSCKQVQFIFAAFCKLRPGTPMLHLHGRMNQLRRMSVYQEFCRKK 344

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+AARG+D P+++ V+  +   + +  +HR+GRT R    G S+ V+    + 
Sbjct: 345 FAVLVATDIAARGLDFPEIDWVVQLDCPEDADTYIHRAGRTARYNGNGNSLLVLTPTEKE 404

Query: 355 RAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +  +   V ++     S +   I  +      +D  F +  Q      +       D
Sbjct: 405 AMLKHLQNKKVPILKSEIQSNKLGKIDRKLQSYCAEDKEFKEKAQRCFVAYIRSTFLMKD 464

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
                A  +            I P      R 
Sbjct: 465 KSVFDAMKVPFSEFSSSLGLAIPPRVRFLERK 496


>gi|58259181|ref|XP_567003.1| Pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134107275|ref|XP_777522.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687426|sp|Q5KNF8|PRP28_CRYNE RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|50260216|gb|EAL22875.1| hypothetical protein CNBA6450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223140|gb|AAW41184.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 738

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/412 (28%), Positives = 179/412 (43%), Gaps = 33/412 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  I + + E GY   + +Q   +   ++ +D++  A+TGSGKT AF + +   +    
Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +    P AL +APTRELA Q+  E        G      +GG SV  ++  L++G
Sbjct: 382 PLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGGRSVEEQQFALRDG 441

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D +    L +S  + VV+DEAD M+DLGF  D+ FILDS P       
Sbjct: 442 AEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPD 501

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------------------- 221
            S  + P      + ++   +         +     Y                       
Sbjct: 502 DSVALQPTKEGEWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRV 561

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             V      +   I  +         IVF + + +     K + +     V L    SQ+
Sbjct: 562 EFVHGDEKKKARLIEILRTIGLPPPIIVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQE 621

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  ALQ +RDG   V +ATD+A RGID+PD+ LVI+ ++S   E  +HR GRTGRAG+ 
Sbjct: 622 QREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKT 681

Query: 342 GMSVFVIPQNMQRRAERL--------FREANVSVVWEPAPSVEAIRERDAQR 385
           G+++  +  +       L          + N  +    A      RE   +R
Sbjct: 682 GVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTREMKRKR 733


>gi|313231894|emb|CBY09006.1| unnamed protein product [Oikopleura dioica]
          Length = 1234

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/570 (22%), Positives = 234/570 (41%), Gaps = 50/570 (8%)

Query: 4    FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
            FE   + + +AL+  G+   T +Q+A +   +  +D+   A TGSGKT AF L +     
Sbjct: 659  FE---RKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQR-F 714

Query: 64   AENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A  D     S    L + PTREL VQV       +     V VA   GG+ + ++ + L+
Sbjct: 715  ALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQVLR 774

Query: 123  NGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+V TPGRL DH       ++  ++ +VLDEAD MLD  F   ++ IL  + K R+
Sbjct: 775  RDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKTRQ 834

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             ++FSAT++  +  L        +++ I+S       ++ + V +      +    +   
Sbjct: 835  TMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVAAL 894

Query: 242  HGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + + +  ++   TR    R   +L     +VV L G +SQ  R  AL   ++G A + + 
Sbjct: 895  NKSLRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAHIMVC 954

Query: 301  TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
            TDVAARG+D+P +  VI+  L +N ++ +HR GRT RAG++G S+ ++ ++  +  + + 
Sbjct: 955  TDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKILKMII 1014

Query: 361  REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            + +  S       +         + +      L+  +   KK++D+   +       A  
Sbjct: 1015 KASKTSCKTRTLAT---------EVVTNFKTKLNEYESKVKKIIDMENEE-------AAL 1058

Query: 421  LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
              I      A  ++  +     R  F+              +         + G ++   
Sbjct: 1059 AAIENQVNAAKNKV--IRPNEKRGWFQTKYERELEKADRMLDAHSGIRNRNTRGKQKN-- 1114

Query: 481  ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLL--RRTVKLDKGIQLKYLGG 538
                                 I         ++     D    R   +  KG +++ LG 
Sbjct: 1115 --------------------KIDTNTPEGRAQLEMQKADAFRHREQKREKKGNRVRALGS 1154

Query: 539  EKPDFRGYKSSGFKSKNSQDGATKRFKRFK 568
            E+      ++   K    +DG   R    +
Sbjct: 1155 EQSQKEKAEAR-EKKLARKDGKKNRSGFAR 1183



 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/480 (24%), Positives = 213/480 (44%), Gaps = 26/480 (5%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE   + + +AL+  G+   T +Q+A +   +  +D+   A TGSGKT AF L +     
Sbjct: 110 FE---RKLLKALANVGWTTPTPIQKASIPVAVTGRDICACATTGSGKTGAFVLPILQR-F 165

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQ 122
           A  D     S    L + PTREL VQV       +     V VA   GG+ + ++ + L+
Sbjct: 166 ALRDPSKVESCTRVLVLLPTRELCVQVFAVFRKLVAELENVTVACAAGGLDLVQQTQVLR 225

Query: 123 NGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               I+V TPGRL DH       ++  ++ +VLDEAD MLD  F   ++ IL  + K R+
Sbjct: 226 RDPDILVATPGRLIDHLHNTPNFSLQEIEILVLDEADRMLDEFFASQMKEILSQTCKTRQ 285

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT++  +  L        +++ I+S       ++ + V +      +    +   
Sbjct: 286 TMLFSATMTDTVQELTDVALTKPMKIFISSNTDVADGLEQQFVRIRPGREGDREAMVAAL 345

Query: 242 HGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           + + +  ++   TR    R   +L     +VV L G +SQ  R  AL   ++G A + + 
Sbjct: 346 NKSLRMLLILYQTRKMAHRMHILLGLLGLKVVELHGSMSQTARLEALANFKNGTAHIMVC 405

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P +  VI+  L +N ++ +HR GRT RAG++G S+ ++ ++  +  + + 
Sbjct: 406 TDVAARGLDIPSVRTVINMTLPNNYKSYVHRVGRTARAGKQGRSISLVGESEWKILKMII 465

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           + +  S       +         + +      L+  +   KK++D+   +       A  
Sbjct: 466 KASKTSCKTRTLAT---------EVVTNFKTKLNEYESKVKKIIDMENEE-------AAL 509

Query: 421 LRIHRAGLCAPEEITPVSLVSG---RDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
             I      A  ++   +   G       R+  +A ++     D         L +    
Sbjct: 510 AAIENQVNAAKNKVIRPNEKRGWFQTKYERELEKADRMLKNKIDTNTPEGRAQLEMQKAD 569


>gi|302415451|ref|XP_003005557.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
 gi|261354973|gb|EEY17401.1| ATP-dependent RNA helicase dhh-1 [Verticillium albo-atrum VaMs.102]
          Length = 390

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 11/350 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FEN  + + +   + E G+   + +QE  +   L  +DVL  A+ G+GKT AF +     
Sbjct: 48  FENFQLKRDLLMGIFEAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALEK 107

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  +         L + PTRELA+Q  +  + L    G+ V V  GG  +  +   L
Sbjct: 108 INPKVSKI------QCLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRL 161

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q+  HIVVGTPGR+ D       ++S     ++DEAD++L + F   IE +L   PK R+
Sbjct: 162 QDPVHIVVGTPGRILDLAGKTVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQ 221

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +++FSAT   ++   +     +   +N+  E             V    + + +  +   
Sbjct: 222 VMLFSATFPLSVKDFSDKNMANPYEINLMDELTLRGI-TQYYAFVEEKQKVHCLNTLFSK 280

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +       +++QQ R+      R+G  R  + +
Sbjct: 281 LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCS 340

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIP 349
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G    G S+  IP
Sbjct: 341 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYGHLADGWSLRAIP 390


>gi|145506703|ref|XP_001439312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406496|emb|CAK71915.1| unnamed protein product [Paramecium tetraurelia]
          Length = 493

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 137/373 (36%), Gaps = 11/373 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK +  + Q +   L++ GY   T +Q   +   L++K+++  A TGSGKT AF L    
Sbjct: 100 MKNY--LNQDLMNQLTKSGYQKPTPIQMVAIPIILQKKNLIAIAPTGSGKTCAFALPTLH 157

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +       P  L  AP +ELA Q+ +E      +  +            +  + 
Sbjct: 158 NLENHKEG-----GPRCLVFAPAQELADQLYKEFNKFNKELKIKQ--IQEMNREKQAFKQ 210

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N   I++ +P +     +   L+      +   +    L L  +      +  S +  
Sbjct: 211 AWNHIDILISSPLKFLKLHKVVDLSTVEYVIMDEADKYFELGLLAQVKQLLRILESLQIT 270

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            M   +    P      +        +     +           +     +   I N++ 
Sbjct: 271 YMFFSATLPEPVEDIYRELLIDPIKIMIGGRNHVLSRIDQQLRYVSNEYGKIQEIKNLIN 330

Query: 241 Y-HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVC 298
                   +VF  ++         + +     V    G++  + R   ++    G   + 
Sbjct: 331 EGQMTPPVLVFVQSKTRAEALMYEIEQLKVIRVNCIHGDMESKTRQEIVEQFHKGTIWML 390

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARGID  D++LVI+ +   +    +HR GRTGRAG++G ++ +   + +     
Sbjct: 391 ICTDMMARGIDFKDVQLVINYDFPQSMITYVHRVGRTGRAGKQGKAITLFTDDDKSMLRS 450

Query: 359 LFREANVSVVWEP 371
           L     VS    P
Sbjct: 451 LANVLKVSGCQVP 463


>gi|298208437|ref|YP_003716616.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
 gi|83848360|gb|EAP86229.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Croceibacter atlanticus HTCC2559]
          Length = 372

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 206/372 (55%), Gaps = 11/372 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK F ++     + + L+E G +N T +QE  +   L +  D +  AQTG+GKT A+GL 
Sbjct: 1   MKTFSDLGISPKLVKGLTELGIINPTEIQEQAIPVLLEKPTDFVGQAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHR 116
           +   +       +  +   AL + PTRELA+QV ++L      +  + +    GG  + +
Sbjct: 61  MLELIN------ASKNHVQALVLCPTRELAMQVSKQLFKFTKYSDKIFSETVYGGAQIDK 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + LQ   HI+V TPGRL D ++ K ++++++K VVLDEADEML +GF+ D++ IL + 
Sbjct: 115 QIKALQRPTHIIVATPGRLVDLMKKKVVDLTNVKTVVLDEADEMLSMGFKKDLDTILSAL 174

Query: 177 PKKRRMLMFSAT-ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           P  +   +FSAT        +  +   +A+++ ++ +N  +  I+++ +LV  +D+   +
Sbjct: 175 PATKNRWLFSATLPEGIRQIINSHLSSNAIKIKVSGKNVVNKKIEHKYILVEDADKLTTL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L++ G +  IVFC T+ +     K L        A+ G+L Q+ER   ++  ++   
Sbjct: 235 LQYLKFKGKERGIVFCKTKNTTKTLAKQLIAKNISADAIHGDLLQKERDKVMRAFKNESL 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ +ATD+ ARGID+ DL  V+H EL S  E   HRSGRT RAG++GMS+ ++     ++
Sbjct: 295 RILVATDLTARGIDVEDLAFVVHYELPSQDEFYTHRSGRTARAGKEGMSLAIVNSKELKQ 354

Query: 356 AERLFREANVSV 367
                +   +S 
Sbjct: 355 LRFFEKTLGISF 366


>gi|198466271|ref|XP_002135148.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
 gi|198150524|gb|EDY73775.1| GA23405 [Drosophila pseudoobscura pseudoobscura]
          Length = 597

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/431 (20%), Positives = 166/431 (38%), Gaps = 22/431 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   G+   T +Q   L    +++ ++  A TGSGKT+AF   + + L    
Sbjct: 130 LLPRLQQNVLSYGFSQPTPIQMQALPVLFQKRALMACAPTGSGKTLAFLTPIINGL---- 185

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +   AL +APTRELA Q+ RE   L  +TG+            ++        +
Sbjct: 186 -RSHKTTGLRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKHGAECKQKY 244

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            ++ +       +  +   +  LK V     DE   L       F               
Sbjct: 245 DILISTPNRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHPQ 304

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++    T      K A+R              +   +       + + S +  A+ N+
Sbjct: 305 KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGKLVAMRNL 364

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G   V 
Sbjct: 365 VRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGNIWVL 424

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRR 355
           I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q+     R 
Sbjct: 425 ICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTANLRS 484

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + + +  +V       ++ +R+ +A+   + PL  + I    +       A  +  +
Sbjct: 485 IALIIKNSGGTVPEYML-QMKKVRKSEARIRAKKPLEREDISTKIRPE-----ASIEATQ 538

Query: 416 IAAGFLRIHRA 426
            +A   +I +A
Sbjct: 539 KSAKLQKIQKA 549


>gi|229582467|ref|YP_002840866.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
 gi|228013183|gb|ACP48944.1| DEAD/DEAH box helicase domain protein [Sulfolobus islandicus
           Y.N.15.51]
          Length = 360

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/358 (29%), Positives = 169/358 (47%), Gaps = 20/358 (5%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            +FEN+ + + +AL+E GY+  T VQE ++   +  K V+V A+TGSGKT A+ + +   
Sbjct: 17  NMFENLSEDLRKALNEAGYIKPTRVQEVVIPELMNSKSVIVQAKTGSGKTAAYVIPILER 76

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                          AL ++P+RELA Q+  E++ L     + V++ I          D 
Sbjct: 77  NST------------ALILSPSRELATQILDEIKKLGKYKQIDVSLII-----GGMSYDD 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           Q  + IVVGTPGRL D      ++ S    V++DEAD MLD+GF DDI  IL+    K  
Sbjct: 120 QRQSKIVVGTPGRLLDLWSKGKIDFSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIA 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               +      +T   +  +     V    +  +     +  V    +D+ + ++     
Sbjct: 180 GFFSATIPDEIMTLAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKLLE---E 236

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  +VF  TR    +   +L      V  LSG++ Q  R       + G+  V +AT
Sbjct: 237 INGEKILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNVLVAT 296

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           D+A+RGID+ D+  VI+ ++  + E  +HR GRTGR GR G ++           +R+
Sbjct: 297 DLASRGIDIIDVNKVINFDIPRDVETYIHRVGRTGRMGRVGQAITFYTFREADMIKRI 354


>gi|126344320|ref|XP_001381629.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Monodelphis domestica]
          Length = 818

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 394 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 453

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 454 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 513

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 514 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 573

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 574 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 633

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 634 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 693

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 694 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 753

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 754 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 788


>gi|28211493|ref|NP_782437.1| ATP-dependent RNA helicase [Clostridium tetani E88]
 gi|28203934|gb|AAO36374.1| ATP-dependent RNA helicase [Clostridium tetani E88]
          Length = 386

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 198/391 (50%), Gaps = 10/391 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   + Q + E L + G    T +Q   +   L  KDV+  + TGSGKT+A+ L +
Sbjct: 2   IESFDKLGLNQNLIEGLKQEGINKPTDIQIKTIPLALENKDVIGQSPTGSGKTLAYLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHR 116
              +              A+ +APT ELA+Q+ +E++ L   +   V     IG  +V R
Sbjct: 62  FQKIDTSKREM------QAIILAPTHELAMQINKEIQLLSGNSKVSVTSTPIIGNANVKR 115

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+   H++VG+ GR+ + I+ K ++   +K +V+DE D++LD      I+ ++ ++
Sbjct: 116 QIEKLKEKPHVIVGSSGRILELIKKKKISAHTIKTIVVDEGDKLLDHSNLSSIKDVIKTT 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            + R++++FSATI+     +AK   KDA  +   SEN  + +I +   +    D+   + 
Sbjct: 176 MRDRQLMVFSATINEKTLNVAKGLMKDAEFIKAKSENAINPNITHMYFISDQRDKIEVLR 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++     + AIVF +        T  L  H  +   + G  S+++R  AL+  R G+ +
Sbjct: 236 KLVASINPEKAIVFINKSDETEIITAKLKYHKIKAEGIHGSSSKKDRQKALEGFRSGKLQ 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+D+AARG+D+ ++  + + +L S+P+  LHR GRT R G  G ++ ++        
Sbjct: 296 LLVASDIAARGLDIKNVSHIFNLDLPSDPKEYLHRVGRTSRTGETGTAISIVTDKELSLI 355

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           ++  R+  + +  +     + +  + + R +
Sbjct: 356 KKYERDFKIEINSKTIYKGKILNSKKSSRSI 386


>gi|66810125|ref|XP_638786.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
 gi|74897069|sp|Q54Q94|DDX10_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx10; AltName:
           Full=DEAD box protein 10
 gi|60467406|gb|EAL65432.1| hypothetical protein DDB_G0284017 [Dictyostelium discoideum AX4]
          Length = 878

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 182/389 (46%), Gaps = 9/389 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+++P  Q+  +AL+E  ++ LT +Q A L   L  +D+L +A+TGSGKT++F L + 
Sbjct: 141 TDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKTGSGKTLSFILPIL 200

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TL    +R+       A+ ++PTRELA+Q+   L+ +         + IGG +V +E+ 
Sbjct: 201 ETLW--RNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKD 258

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L       G + S+LK +VLDEAD +LDLGF   +  I+++ P++
Sbjct: 259 KINAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRE 318

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT + +I         + + + V          ++     ++ L  + N + +
Sbjct: 319 RQTLLFSATQTKSIRDLARLSLQEPEYISVYEKDITTTPQNLTQTLCVIPLEMKLNMLFS 378

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            ++ H     IVF ++   V    +                  ++ +     +     +A
Sbjct: 379 FIKTHLTSKIIVFFASCKQVRFAHETFKLLNPGTTLFPLHGKMKQWTRLEVFEDFCKKKA 438

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
               ATD+AARG+D P +E VI  +   + E  +HR GRT R    G S+ ++  + +  
Sbjct: 439 GTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTARNDAPGQSITILLPSEKDG 498

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQ 384
              L  +  +       P+ E +   D++
Sbjct: 499 MVNLMEKQKMKFEILE-PNPEKLVSIDSK 526


>gi|317047409|ref|YP_004115057.1| DEAD/DEAH box helicase domain-containing protein [Pantoea sp.
           At-9b]
 gi|316949026|gb|ADU68501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
          Length = 451

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A++E+GY   T +Q   +   L  +D+L SAQTG+GKT  F L L   L A++
Sbjct: 8   LNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLLQRLSAKD 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QVG  +        +   V  GGVS++ +   L+ G  
Sbjct: 68  APARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMMKLRGGVD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D      +++SH++ +VLDEAD MLD+GF  DI  +L   P KR+ L+FS
Sbjct: 128 VLVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I +LA+    +  +V +A  N     +  +   V    +   +  ++     + 
Sbjct: 188 ATFSDEIKSLAEKLLNNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMIGRDNWQQ 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +   + L +      A+ G  SQ  R+ AL   + G  RV +ATD+AAR
Sbjct: 248 VLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLVATDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+ +L  V++ EL +  E+ +HR GRTGRA   G ++ ++  +  +    + R     
Sbjct: 308 GLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDIERLLKRE 367

Query: 367 VV------WEPAPSVEA 377
           +       ++P PS++A
Sbjct: 368 IPRIALPGFDPDPSIKA 384


>gi|145502420|ref|XP_001437188.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124404337|emb|CAK69791.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 180/384 (46%), Gaps = 10/384 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +   +   G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  
Sbjct: 16  VETFEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGA 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +         + +AP RELA Q+   ++ +     +    CIGG S    R
Sbjct: 76  LQRIDPNQRK------TQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G HI++ TPGRL D ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P 
Sbjct: 130 EKCKQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPG 189

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++ +FSAT    I         +  A  +    +        +   +     +   +V
Sbjct: 190 DIQIALFSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLV 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      +I+FC+++ +V      L    F V  +  ++ Q+ER   +Q  + G AR
Sbjct: 250 ELYKNLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAAR 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + ++TD+  RGID+  L LVI+ E     E  +HR GR GR GRKG+++ ++ Q      
Sbjct: 310 ILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLL 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380
             + +  N  +   P    E  +E
Sbjct: 370 LEVEKYYNTKIDEMPKDLAEVEKE 393


>gi|145500870|ref|XP_001436418.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403557|emb|CAK69021.1| unnamed protein product [Paramecium tetraurelia]
          Length = 395

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 180/384 (46%), Gaps = 10/384 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +   + +   +   G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  
Sbjct: 16  VETFEELTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGA 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +         + +AP RELA Q+   ++ +     +    CIGG S    R
Sbjct: 76  LQRIDPNQRK------TQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR 129

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G HI++ TPGRL D ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P 
Sbjct: 130 EKCKQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPG 189

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++ +FSAT    I         +  A  +    +        +   +     +   +V
Sbjct: 190 DIQIALFSATFPQEIIELSKQFLREGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFRVLV 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      +I+FC+++ +V      L    F V  +  ++ Q+ER   +Q  + G AR
Sbjct: 250 ELYKNLTVSQSILFCNSKKTVDDLHDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAAR 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + ++TD+  RGID+  L LVI+ E     E  +HR GR GR GRKG+++ ++ Q      
Sbjct: 310 ILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLL 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380
             + +  N  +   P    E  +E
Sbjct: 370 LEVEKYYNTKIDEMPKDLAEVEKE 393


>gi|326526777|dbj|BAK00777.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 731

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 129/383 (33%), Positives = 199/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 320 ELLRAIEKVGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 379

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +
Sbjct: 380 EDNEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEV 439

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 E
Sbjct: 440 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEE 499

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S+
Sbjct: 500 EELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMVKESE 559

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + +  IL   G K AIVFC+T+ S     K L +  F+V AL G  SQ +R  +L   
Sbjct: 560 KMSRLQKILTDLGDKTAIVFCNTKKSADNRAKDLDKAGFRVTALHGGKSQDQREISLDGF 619

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 620 RNRRFNVLVATDVAGRGIDIPDVAHVINYEMPSSVDTYTHRIGRTGRAGKKGLATSFLTL 679

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 680 DNTDIFFDLKQMLTQSNSPVPPE 702


>gi|307191878|gb|EFN75297.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
          Length = 465

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 164/364 (45%), Gaps = 27/364 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE    P  +   +  +G+   T++Q       L  +D++  AQTGSGKT+A+ L     
Sbjct: 49  FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 108

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +  R S    P+AL +APTRELA Q+ +        + V      GG     + RDL
Sbjct: 109 INHQ-PRLSRNDGPIALILAPTRELAQQIQQVASDFGMSSQVRNTCIFGGAPKGPQARDL 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++     R+
Sbjct: 168 ERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQ 227

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVN 237
            LM+SAT    +  LA+ +  D +++NI S     +    + V V        +   ++ 
Sbjct: 228 TLMWSATWPKEVRNLAEEFLTDYIQINIGSLQLAANHNILQIVDVCEEYEKEGKLMKLLE 287

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +        I+F  T+  V   T+ +  + +Q + + G+ SQQER   L          
Sbjct: 288 EISNEPENKTIIFVETKRKVDDITRAINRYGWQAIGIHGDKSQQERDYVLN--------- 338

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
                       + D++ VI+ +  SN E+ +HR GRTGR+ R G +          +A 
Sbjct: 339 -----------HVEDVKFVINLDYPSNSEDYVHRIGRTGRSQRTGTAYAFFTPGNAHKAS 387

Query: 358 RLFR 361
            L +
Sbjct: 388 DLIQ 391


>gi|293189188|ref|ZP_06607912.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
 gi|292821860|gb|EFF80795.1| ATP-dependent RNA helicase DeaD [Actinomyces odontolyticus F0309]
          Length = 502

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 192/376 (51%), Gaps = 9/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ + 
Sbjct: 63  KSFADFGVTDPIVDALEDKGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVL 122

Query: 60  STLLAENDRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++A ++         + P AL I PTREL  QV ++L          +    GGV+  
Sbjct: 123 EDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFE 182

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ GA IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L  
Sbjct: 183 PQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSR 242

Query: 176 SPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P+ R  ++FSAT+   +                 +   +N+  + +      V   ++ 
Sbjct: 243 VPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKV 302

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++FC T+ + +R  + L    F V +L G+L Q  R  AL+  R+
Sbjct: 303 EVVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRN 362

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  + 
Sbjct: 363 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDD 422

Query: 353 QRRAERLFREANVSVV 368
             R   + +   + V 
Sbjct: 423 TPRWSLISKALGLGVP 438


>gi|117617930|ref|YP_855071.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559337|gb|ABK36285.1| ATP-independent RNA helicase DbpA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 458

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 134/402 (33%), Positives = 208/402 (51%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + + L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AFGL L + L   
Sbjct: 9   NLSPALQDNLASLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLANLDVN 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV  E+  L      V  V   GG     +   L  G
Sbjct: 69  RLEV------QALVLCPTRELADQVATEIRRLARTLPNVKLVTLCGGTPTAPQSATLSFG 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI VGTPGR+  H+    L +  LK +VLDEAD MLD+GF +DI  ++  +P+ R+ L+
Sbjct: 123 AHIAVGTPGRILKHLEQGTLELDGLKTLVLDEADRMLDMGFGEDINRVISHAPRDRQTLL 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +++  Q++ V V++ S +   +  + +   V    R +A+  +L ++  
Sbjct: 183 FSATYPEGIAQMSRGVQRNPVEVSVESLHEDSAI-EQKLYEVPAGQRLDALGWLLSHYQP 241

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDVA
Sbjct: 242 SSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 301

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R   +     
Sbjct: 302 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFIEEY-- 359

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                 P P  +        + +   +   SI    K  V  
Sbjct: 360 ---QQAPIPQGDLAGIGRDIKPIAPQMVTLSIDAGRKSKVRA 398



 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFR-DDSRAFKVGGGSRDN 462
           +DPE       R  RAG       L  P E   V+ +    +          +G   +  
Sbjct: 320 YDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFIEEYQQAPIPQGDLAGIGRDIKPI 379

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGV 518
                  S+  G K K  A  ++  L    GI    +G I++    ++V    +V++  +
Sbjct: 380 APQMVTLSIDAGRKSKVRAGDILGALTGEGGIAGADVGKIQISEQYSYVAVKRQVASAAL 439

Query: 519 DLLRRTVKLDKGIQLKYLG 537
             L+      +  + + LG
Sbjct: 440 KRLQEGKIKGRSYRARKLG 458


>gi|268568362|ref|XP_002640231.1| Hypothetical protein CBG12746 [Caenorhabditis briggsae]
 gi|187029335|emb|CAP31678.1| hypothetical protein CBG_12746 [Caenorhabditis briggsae AF16]
          Length = 631

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 187/382 (48%), Gaps = 18/382 (4%)

Query: 1   MKIFENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK     P+ + + L + +G V  T++Q   +   L  +D++  A TGSGKT+ F L L 
Sbjct: 195 MK----FPKPLLQFLQKQKGIVTPTAIQIQGIPVALCGRDMIGIASTGSGKTMTFVLPLI 250

Query: 60  STLLAENDR--FSPASAPLALAIAPTRELAVQVGR------ELEWLYAKTGVVVAVCIGG 111
              + +  +  F     P  L I P+RELA Q+        E         +   +CIGG
Sbjct: 251 MFCIEQEVKLPFMRNEGPFGLIIVPSRELARQIYDLIIEMSEAIAKAGFPELRAGLCIGG 310

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           V +  + +D + G HIVV TPGRL D +  K +N+   + +VLDEAD MLD+GF D+I+ 
Sbjct: 311 VPIGEQAKDFRQGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 370

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I      +R+ L+FSAT+   I   AK+     + VN+        ++      V   ++
Sbjct: 371 IFYFFKSQRQTLLFSATMPKKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENK 430

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+    K  ++F   +  V    + L     +V ++ G   Q +R   ++  R
Sbjct: 431 LVRVLECLQKTSPK-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFR 489

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V +ATDVA++G+D   +E VI+ ++  + EN +HR GRTGR+GRKG++   I + 
Sbjct: 490 KNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 549

Query: 352 MQR----RAERLFREANVSVVW 369
            +       ++L  EA   +  
Sbjct: 550 SEMSVLSDLKQLLVEAGQELPE 571


>gi|294141707|ref|YP_003557685.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293328176|dbj|BAJ02907.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 352

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/352 (29%), Positives = 169/352 (48%), Gaps = 6/352 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  + ++ + + + L   G    T +Q+  +   L  KD++ S++TGSGKT+AF L   
Sbjct: 1   MQFTDFSLDKRLLDTLDHMGIETPTEIQQQAIPVGLSGKDLMASSKTGSGKTLAFLLPAM 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++  + R      P  L + PTRELA QV  +L  L A T       +GG + + + +
Sbjct: 61  QRII--STRALSKKDPRVLILLPTRELANQVYGQLRLLVANTQYKAMKILGGENFNDQAK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD---IEFILDSS 176
            L    H VV TPGRL DH+    L+++ L+ ++LDEAD MLDLGF +    I    D  
Sbjct: 119 LLARDPHFVVATPGRLADHLAQHHLHLNGLELLILDEADRMLDLGFAEQLKAINKAADHK 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            ++  M   +          A+  +        A             +   L  ++  + 
Sbjct: 179 RRQTLMFSATLDHGQINDIAAELLKSPEHVDVGAGNIENLDITQRIYLADHLDHKEALLE 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +IL     K  I+F +TR    R    LA    +  +LSG L Q  R+  +     G  +
Sbjct: 239 SILNNETHKQIIIFTATREDTDRLATKLAASGHKTASLSGNLKQSARNQIMDQFSRGLQK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + + TD+A+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++
Sbjct: 299 ILVTTDIASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350


>gi|308804011|ref|XP_003079318.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057773|emb|CAL53976.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri]
          Length = 683

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 9/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +AL +RG   L  +Q+A+L P +  +DV+  A+TG+GKT+AF L +   LL+  
Sbjct: 32  MSETTVQALRKRGVDALFPIQQAVLRPAMDGQDVVGRARTGTGKTLAFSLPVIEKLLSNG 91

Query: 67  DRFSPASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P  + +APTRELA QV  E+           A   GG  + ++   L+ G
Sbjct: 92  RGSGGRGYRNPKCIVLAPTRELAKQVENEIFITAPTLD--TACVYGGTPIGQQESKLRRG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGR+ D +  + L++S ++ VVLDEAD+ML++GF +D+E IL   P  R+  +
Sbjct: 150 VDIVVGTPGRIMDLMNRRALDLSEIEFVVLDEADQMLNVGFEEDVEAILHDCPAGRQTFL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNI----ASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           FSAT+   +  + K + K    V        +    +       +   S     +  +  
Sbjct: 210 FSATMPQWVKQITKKFLKAQHVVVDLVGDNKQKVADTIDLMTCAVSQTSRTSIVMDLVTV 269

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           Y   K  I F  T+ +    T  L + +   V   G+++Q +R   LQ  RD R  V IA
Sbjct: 270 YAKDKKCICFTQTKRAADELTAALGKRVSCEVLH-GDIAQAQRERTLQRFRDNRFTVLIA 328

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ D++LVIH EL ++ E+ +HR GRTGRAG++G ++ +          R+ 
Sbjct: 329 TDVAARGLDISDVDLVIHYELPNDVESFVHRCGRTGRAGQQGAAIAMYTDRESYMIRRIQ 388

Query: 361 REANVSVVWEPAPSVEAI 378
           +E          PS   +
Sbjct: 389 KETGCDFRAIDIPSSTEV 406


>gi|255534825|ref|YP_003095196.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341021|gb|ACU07134.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
           3519-10]
          Length = 380

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 178/369 (48%), Gaps = 5/369 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +++ + G++    VQE  +   L  KD++  AQTGSGKT  F + +  
Sbjct: 2   SFESLGLSHNIIKSVRKLGFLKPFPVQEQTIPVILSGKDLMGVAQTGSGKTACFVMPILD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +N+          L +APTREL +Q+              +        V    + 
Sbjct: 62  KL--QNEDIKKDRNIQVLVLAPTRELVIQIDEVFRVFTENLKREIRTMAVYGGVSINPQM 119

Query: 121 LQN-GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
               G  ++V TPGRL D I  K L+IS +  +V+DEAD+M  LGF +++  +    P K
Sbjct: 120 KGMLGVEVLVATPGRLLDLIDHKALSISQITHLVIDEADKMFQLGFEEEMNTLFAMMPPK 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ ++FSAT++  +  + +    + V V I  E      I   A  V    +   +  ++
Sbjct: 180 KQTVLFSATLNDKVEEIKQRLTIEPVLVEIKQEEVDIDQITQIAYHVTNESKGPFLRYLI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +    K A+VF S+  S     + L ++     A+ G+ SQ  RS  LQ  ++G  ++ +
Sbjct: 240 KEQDIKQALVFASSTRSADHLAEKLNKNKIPATAIHGQKSQGSRSGNLQGFKEGETQILV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+  RGI +  LE+VI+ EL  +P + +HR GRTGRA   G ++ ++  +  +    +
Sbjct: 300 ATDLIGRGIHIDALEVVINYELPRSPLDYIHRIGRTGRANGHGTAITLLTDDELQHFRVI 359

Query: 360 FREANVSVV 368
            ++    V 
Sbjct: 360 QKKMGKRVE 368


>gi|320581153|gb|EFW95374.1| ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 747

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/475 (28%), Positives = 223/475 (46%), Gaps = 21/475 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I +ALS  GY   +++Q A +   L  KD++  A TGSGKT A+ + +   LL   
Sbjct: 247 LSRPILKALSALGYSKPSAIQSASIPIALLGKDIVAGAVTGSGKTAAYMIPIIERLLY-- 304

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
            + S   +   + +APTRELA+QV    + +     G+   + +GG+++ ++ ++L+   
Sbjct: 305 -KPSKMPSTRVIVLAPTRELAIQVADVGKKIGQFVNGLTFGLAVGGLNLRQQEQELKKRP 363

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHIR     N+  ++ +V DEAD ML+ GF+ ++  IL   P  R+ ++
Sbjct: 364 DIVIATPGRLIDHIRNSVSFNVESVEVLVFDEADRMLEEGFQKELTEILSLLPLNRQTML 423

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL----R 240
           FSAT++  I +L +   K  VRV I +     S++    V +   +     +        
Sbjct: 424 FSATMNSRIKSLIQLSLKKPVRVMIGAPKAAASELVQEFVRIRKRESSKPALLFNILSEM 483

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVF S +    R    L     +V  L G L+Q++R  A+   ++    + I 
Sbjct: 484 DGLHSRVIVFVSRKEMAHRLRISLGLLGLKVSELHGSLTQEQRLKAIVDFKNLTVPILIC 543

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+P +ELVI+ ++    E  LHR GRT RAGRKG+S+  + ++ Q R   + 
Sbjct: 544 TDLAARGLDIPKIELVINFDMPKTYEIYLHRVGRTARAGRKGLSISFVGESSQDR--NIV 601

Query: 361 REANVSVVWEPAPSVEAI-------RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
           +EA   V  E A   +AI             RILQ+   +     +E+K    LL     
Sbjct: 602 KEAIKQVETENA--GKAIGRNVNWENVEKIHRILQEKESVIFDVLNEEKQEKELLKAEQE 659

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
            K     L   +     P + T       + +  D            ++ K  + 
Sbjct: 660 IKKGENMLNFEQEIKSRP-KRTWFMTSQQKKKESDRLNPENQKDKKLNSKKRKAL 713


>gi|94988990|ref|YP_597091.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94990990|ref|YP_599090.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94992883|ref|YP_600982.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94542498|gb|ABF32547.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
 gi|94544498|gb|ABF34546.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
 gi|94546391|gb|ABF36438.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 447

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 198/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +       + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHFQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|71030480|ref|XP_764882.1| RNA helicase-1 [Theileria parva strain Muguga]
 gi|68351838|gb|EAN32599.1| RNA helicase-1, putative [Theileria parva]
          Length = 598

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 21/370 (5%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGS----------GK 50
            FE+  +P+ I +AL  +     T +Q   +   L  +DV+  + TG+          GK
Sbjct: 193 TFEDMKLPRPILKALRHKKIFEPTKIQMQAMPAVLLGRDVIGISPTGTLTKFNLFLGTGK 252

Query: 51  TVAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV---- 104
           T+ F + +         R    P   P  L I P+RELA Q+    ++            
Sbjct: 253 TLVFVIPMIMQSWEIELRLPIEPREGPFGLVICPSRELASQIYDITKYFAEYISKYDRPK 312

Query: 105 --VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
              A  IGG  +  +   +++G H+V+ TPGRL   +  + +N++  + +  DEAD ++D
Sbjct: 313 LYCACVIGGTGIKDQEHSIKSGVHMVIATPGRLNYFLNSRIINLTQCRYLCFDEADRIID 372

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           LGF  +I+ I      + + L+FSATI   I   AK    + + VN+      + ++   
Sbjct: 373 LGFDSEIKSIFSHVNNQHQTLLFSATIPSKIQEFAKLTLTNPIVVNVGVSGSANKNVKQV 432

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            V V    +   ++           ++FC  +A V    + L     +  A+ G LSQ+E
Sbjct: 433 VVAVPKESKLPMLLQC-LKKTPPPVLIFCENKADVEIINEYLILKGVEASAIHGGLSQEE 491

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  ++   ++ +  V I TD+A++G+D P ++ VI+ +L  + EN +HR GRTGR G KG
Sbjct: 492 RIESISDFKNHKKDVLIGTDIASKGLDFPSIQHVINFDLPRDMENYVHRIGRTGRRGEKG 551

Query: 343 MSVFVIPQNM 352
           ++  ++  + 
Sbjct: 552 LATTLLDGSE 561


>gi|134292614|ref|YP_001116350.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
 gi|134135771|gb|ABO56885.1| ATP-dependent RNA helicase DbpA [Burkholderia vietnamiensis G4]
          Length = 465

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 138/405 (34%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L++ GYV++T +Q A L   L   D++  A+TGSGKT AF LAL S 
Sbjct: 9   FSALPLTPATLANLTQLGYVDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLSR 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L       +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + 
Sbjct: 69  LD------ARRFDVQAMILCPTRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQS 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R
Sbjct: 123 LEHGAHVVVGTPGRIMDHLERGNLKLDALNTLVLDEADRMLDMGFFDDIVKVARMCPATR 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L++ +     +    +E    S I  R   V  ++R +A+  +L 
Sbjct: 183 QTLLFSATYPDGIAKLSQQF-LRNPKEVKLAERHDDSKIRQRFYEVTDTERLHAVGQLLN 241

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++   + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 242 HYRPVSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELEQRERDQVLIQFANRSCSVLVA 301

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRA ++G ++ +   +   R   + 
Sbjct: 302 TDVAARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQEGWALSLASMDEMGRVGAIE 361

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +     V W    S+  ++  D   +L  P+    I G  K  + 
Sbjct: 362 QAQKRDVEWH---SLAELKPADEGTLL-PPMETLQILGGRKDKIR 402



 Score = 59.2 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G + + IG I V    T+V     V+ D + 
Sbjct: 386 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIECGVARDALR 445

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       K ++++ +  E
Sbjct: 446 KLNAGKIKGKRVKVRLMDDE 465


>gi|241954424|ref|XP_002419933.1| ATP-dependent RNA helicase, putative; atp-dependent rna helicase
           dbp4 (ec 3.6.1.-) (dead box protein 4 (helicase ca4)
           (helicase uf1) [Candida dubliniensis CD36]
 gi|223643274|emb|CAX42148.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 765

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 189/403 (46%), Gaps = 11/403 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P  +   + L E  +V+LT +Q+  +   L+ +D++ +A+TGSGKT+AF + +
Sbjct: 47  ISQFSDLPITENTLKGLKEATFVSLTDIQKKTIPVALKGEDLMGTARTGSGKTLAFLIPV 106

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L+   ++ +      AL ++PTRELAVQ+   L  +         +  GG  V  E+
Sbjct: 107 IESLI--RNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNSFSAGLVTGGKDVQFEK 164

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G+  S+L+ +VLDEAD  LD+GF+  I+ IL   P 
Sbjct: 165 ERVSRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPT 224

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
            R+ L+FSAT S ++  LA+    +  ++ ++S+    +  +      V V L ++ + +
Sbjct: 225 TRQTLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVL 284

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     +VF S+   V    +        +  +      ++ S           
Sbjct: 285 WSFIKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQA 344

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR+ R GRKG S+  ++P   
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEE 404

Query: 353 QRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +   +RL   +    ++     S ++IR +      +DP+  +
Sbjct: 405 EGMLKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKN 447


>gi|217972736|ref|YP_002357487.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS223]
 gi|217497871|gb|ACK46064.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
          Length = 427

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 4/381 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      D +     SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNDPLEYQFQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQ 388
           V E     EA  E  A+ + Q
Sbjct: 377 VREQIVGFEADDEMPAELLEQ 397


>gi|126175005|ref|YP_001051154.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS155]
 gi|125998210|gb|ABN62285.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
          Length = 427

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 4/381 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      D +     SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNDPLEYQFQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQ 388
           V E     EA  E  A+ + Q
Sbjct: 377 VREQIVGFEADDEMPAELLEQ 397


>gi|145493274|ref|XP_001432633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124399746|emb|CAK65236.1| unnamed protein product [Paramecium tetraurelia]
          Length = 566

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/395 (26%), Positives = 186/395 (47%), Gaps = 17/395 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++     I + LS+      T +Q   L   L  +D++  A +G GKT+ F L  
Sbjct: 116 IKSFQDLRVDHRILKILSKMKIKKPTPIQMQGLPAVLMGRDIIGVAPSGQGKTLVFLLPA 175

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----- 111
               + E  +        P AL + P+ ELA+      +    K        I       
Sbjct: 176 LLQCIEEEMKMPVIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKGFPAIHCLLGIG 235

Query: 112 -VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
            + +  + + ++NG HIV+GTPGR+ D +  K +N+   + +VLDEAD MLD  F  +I 
Sbjct: 236 GMDMSSQLQSIRNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIR 295

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            IL+     R+ ++FSAT+   I    K    D + +N+    + + ++    + V   +
Sbjct: 296 NILEHFTGPRQTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEE 355

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + +++ L+       I F   +  V    + L     +VV L G   Q++R+ AL+  
Sbjct: 356 KLHYLLDCLKKTTPPVVI-FSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQF 414

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +G+  V +ATDVAA+G+D PD++ VI+ ++  + E+ +HR GRTGR G+ G +   + +
Sbjct: 415 LNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFVNR 474

Query: 351 NMQR----RAERLFREANVSVVW--EPAPSVEAIR 379
             +       + L  E+   +    E   S E + 
Sbjct: 475 QQEESILLDLKYLLVESKQKIPQFLEKLKSDEDLN 509


>gi|320095784|ref|ZP_08027429.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977291|gb|EFW08989.1| ATP-dependent RNA helicase DeaD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 575

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/382 (31%), Positives = 196/382 (51%), Gaps = 10/382 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ + 
Sbjct: 78  KSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALDRHDIIGQAKTGTGKTLGFGIPVL 137

Query: 60  S-TLLAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
              +  +   F      ++P AL + PTREL+ QV  +L          +    GGV+  
Sbjct: 138 EDVIAPDEPGFDDLLNPNSPQALIVLPTRELSKQVASDLRAAAKYLSTRIVEIYGGVAFE 197

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ GA +VVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L  
Sbjct: 198 PQISALKKGADVVVGTPGRLIDLLRQGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSR 257

Query: 176 SPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P  R  ++FSAT+   +         +       +   +++  + +      V   ++ 
Sbjct: 258 VPSHRHTMLFSATMPGPVVALARKFMEHPTHIRAQDPDDQHQTVNTVKQVVYRVHSLNKV 317

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G   A++FC T+ + +R  + LA   F V +L G+L Q  R  AL+  R+
Sbjct: 318 EVLARILQSKGRGRAVIFCRTKRTAARLGEDLAARGFAVGSLHGDLGQGAREQALRAFRN 377

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  V++ +   + +  +HR GRTGRAG  G +V  +  + 
Sbjct: 378 GKVDVLVATDVAARGIDVDDVTHVVNYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDD 437

Query: 353 QRRAERLFREANVSVVWEPAPS 374
             R   + +   + V  EP  +
Sbjct: 438 TPRWSLISKALGLGVP-EPLET 458


>gi|123504635|ref|XP_001328793.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121911741|gb|EAY16570.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 515

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/498 (24%), Positives = 214/498 (42%), Gaps = 37/498 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE +     I  AL +  +   T VQ   +   L+ +DV  SA TGSGKT AF +  
Sbjct: 15  VESFEELGLSHSIIRALHKMNFEIPTPVQNKTIPIALQGRDVCASAVTGSGKTAAFLIPT 74

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSVHRE 117
              LL      S  +   A+ ++PTRELA Q    L  +   T +   +  G   +V  E
Sbjct: 75  VERLLRSK---STEAQTRAVILSPTRELAAQTYSVLSQIIQFTPLTALLLTGGSSNVKEE 131

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L      +V TPGR+ DHI+      + ++  +VLDE+D +L  GF   IE +  S 
Sbjct: 132 EERLLEYPDFLVCTPGRIIDHIKNCEGFTLENVLVLVLDESDRLLQEGFYSQIEEVHKSL 191

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  + ++ +AT++ +++ LA+   K  VR+++    +    +    +      RD  +V
Sbjct: 192 PETTQSILVTATMNSSVSRLAEMSLKKPVRIDLDDVFKVAKGLTQEFIRCTKETRDATLV 251

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   K  ++F +T+  V     +       V  L G+++Q +R  A  +   G+A 
Sbjct: 252 ACCSRLCTKKTLIFGNTKKIVHNLYLLFKALGMPVAELQGDMTQLKRYEAHSLFAGGQAE 311

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IATDVAARG+D+  +E VI+  +  +    +HR GRT R   +G ++ +I ++ +   
Sbjct: 312 FLIATDVAARGLDIKGIENVINYNMPRSLTFYVHRVGRTARINTEGRTIALITEDDREMM 371

Query: 357 ERLFREANVS-----------VVWEPAPSVEAIRERDAQRI------------LQDPLFL 393
           + +  ++  S           V+      ++ ++E+ A+              L+D    
Sbjct: 372 KSIIEKSAESNPVSKRTIPDNVIEATQKKIDEVQEKVAEMREEEKEEKVLEKSLKDIERA 431

Query: 394 DSIQGD------EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
             I  +      +KK   V   K DP+  AA      ++     ++         ++  +
Sbjct: 432 RDIASNPMSAVTDKKRTFVSKNKRDPKD-AAVVAAKLKSKKDRRKKRNDDDDKPRKNDNK 490

Query: 448 DDSRAFKVGGGSRDNFKG 465
           +  +  K   G  D   G
Sbjct: 491 NFEKNDKKKSGKFDKNGG 508


>gi|326471484|gb|EGD95493.1| DEAD box helicase [Trichophyton tonsurans CBS 112818]
          Length = 594

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++   +   GY+  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 IKSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 186 LSRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 246 LRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELL 305

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 306 KSDWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 366 LNVTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 426 DRTQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSANHGGIDEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 486 GRTARIGNPGLATSFYNDKNSDIASDLVK 514


>gi|170720088|ref|YP_001747776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida W619]
 gi|169758091|gb|ACA71407.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 483

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/371 (31%), Positives = 181/371 (48%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR KD +  AQTG+GKT AF +++ S L    
Sbjct: 101 LSNELMHAIHDLGFPYCTPIQAQVLGYTLRGKDAIGRAQTGTGKTAAFLISIISQLQQTP 160

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 161 PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKTLEARH 220

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 221 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 280

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  +
Sbjct: 281 LLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASETVEQHVFAVAGSDKYKLLYNLVTQN 340

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 341 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 401 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEEL 460

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 461 LGRKIKCEMPP 471


>gi|15232722|ref|NP_187573.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75337164|sp|Q9SF41|RH45_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 45
 gi|6682258|gb|AAF23310.1|AC016661_35 putative RNA helicase [Arabidopsis thaliana]
 gi|332641267|gb|AEE74788.1| DEAD-box ATP-dependent RNA helicase 45 [Arabidopsis thaliana]
          Length = 989

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 177/382 (46%), Gaps = 35/382 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  Y     +Q   L   +  +D +  A+TGSGKT+ F L +   +  +     
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 465

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  ++       G++     GG  V ++  +L+ G  IVV 
Sbjct: 466 AGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVC 525

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +    R+ ++FSA
Sbjct: 526 TPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 585

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   S+R + ++ +L     K  
Sbjct: 586 TFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKGK 645

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++                                 +  ++   +     + IAT VAARG
Sbjct: 646 VLVFVR----------------------------SQEKSISDFKSDVCNLLIATSVAARG 677

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S 
Sbjct: 678 LDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS- 736

Query: 368 VWEPAP-SVEAIRERDAQRILQ 388
             +P P  V+A+ E    ++ Q
Sbjct: 737 -EQPVPDDVKAVAEGFMAKVKQ 757


>gi|316976022|gb|EFV59375.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 964

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/395 (26%), Positives = 191/395 (48%), Gaps = 17/395 (4%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE-- 65
            + + + L +  Y   T +Q   +   L  +DV+  A+TGSGKT+AF + +   +L +  
Sbjct: 304 SRRVMDLLKKYNYEKPTPIQAQAIPAILCGRDVIGIAKTGSGKTLAFLIPMFRHVLDQPP 363

Query: 66  ---------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                    N+R     A + L + PTRELA+Q+ +E +       +      GG  +  
Sbjct: 364 LDDMDGPIGNERPVQYCALVTLIMTPTRELAMQIAKECKKFSRPLNLSTVCVYGGTGISE 423

Query: 117 ERRDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  +L+ GA I+V TPGR+ D      GK  N+  +  +VLDEAD M D+GF   +  I+
Sbjct: 424 QIAELKRGAEIIVCTPGRMIDMLAANNGKVTNLRRVTYLVLDEADRMFDMGFEPQVLKII 483

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            +    R+ +MFSAT    +  LA+   +  + + + + +    D++  A++V    R  
Sbjct: 484 GNIRPDRQTVMFSATFPRQMEALARKVLEKPIEIIVGNRSTVCQDVEQHAIIVDEEHRFL 543

Query: 234 AIVNILRYHGA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            ++ +L  +    N ++F   +         L    +    L G L Q +R + +   ++
Sbjct: 544 KLLELLGVYYELGNILIFVDKQEHADELVADLMRAGYICAPLHGGLDQFDRDSTIVDFKN 603

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
           G   + IAT VAARG+D+ ++ LV++ +  ++ E+ +HR GR GRAG KG +   I P  
Sbjct: 604 GVITLLIATSVAARGLDVKNMILVVNYDCPNHYEDYVHRVGRCGRAGNKGFAYTFIQPYG 663

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
            +  A  + +   ++    P P ++ + E   Q++
Sbjct: 664 QEVSAGNIVKAFELAGQEVP-PGLKLMWETYKQQM 697


>gi|254572872|ref|XP_002493545.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|238033344|emb|CAY71366.1| ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase [Pichia
           pastoris GS115]
 gi|328354630|emb|CCA41027.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 606

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 188/383 (49%), Gaps = 20/383 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +++ E +    +   T VQ+  +      +D++  AQTGSGKT  F   + S      
Sbjct: 145 LDELLLENIKLSRFTKPTPVQKYSVPIVSNHRDLMACAQTGSGKTGGFLFPVLSECFQTG 204

Query: 67  DRFSPASA----------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                  +          P  L +APTREL  Q+  E +    ++ +   V  GG ++  
Sbjct: 205 PAPIEVESETVFRKHRAYPTILVMAPTRELVSQIYDEAKKFAYRSWMRPCVVYGGANIRD 264

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----I 172
           +  DL  G  ++V TPGRL D +    ++++ +K ++LDEAD MLD+GF   I       
Sbjct: 265 QMEDLILGCDLLVATPGRLSDLLERGKISLAKIKYLILDEADRMLDMGFEPQIRHIVQGC 324

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
              S  +R  LMFSAT    I  LAK++ KD + +++        +I  R + V   ++ 
Sbjct: 325 DMPSVNERHTLMFSATFPRDIQLLAKDFLKDYIFLSVGRVGSTSENITQRVLSVEDDEKK 384

Query: 233 NAIVNILRYHGAKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           + +++IL           ++F  T+      +  L    F   ++ G+ +QQER +AL +
Sbjct: 385 SVLLDILSSSDDIKEGLTLIFVETKRMADTLSHFLVTRNFPATSIHGDRTQQEREHALHL 444

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            + G A + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G++   + 
Sbjct: 445 FKSGAAPILVATAVAARGLDIPNVTHVVNYDLPADIDDYVHRIGRTGRAGNVGIATAFVN 504

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +N+ +    L  EAN  V  
Sbjct: 505 RGNKNLIKGLIELLTEANQEVPQ 527


>gi|258577621|ref|XP_002542992.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
 gi|237903258|gb|EEP77659.1| hypothetical protein UREG_02508 [Uncinocarpus reesii 1704]
          Length = 783

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/409 (26%), Positives = 190/409 (46%), Gaps = 34/409 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +P  + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +    
Sbjct: 350 LPARLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELP 409

Query: 65  --ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +   +  +  P A+ +APTRELA Q+  E     +  G  V   +GG S+  +   L+
Sbjct: 410 RLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCSPLGFNVVSIVGGHSLEEQSFSLR 469

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P     
Sbjct: 470 NGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEK 529

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ-------------------------HS 217
                   P   +     +    +  + +                               
Sbjct: 530 PDTDEAEDPRAMSQHVGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIITIGNVGEAVD 589

Query: 218 DIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            ++ R   +A  D+    +  +          IVF + + +     + + +  F  V L 
Sbjct: 590 TVEQRVEFIAGEDKRKKRLADILASGEYRPPIIVFVNIKRNCDAVARDIKQMGFSAVTLH 649

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRT
Sbjct: 650 GSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRT 709

Query: 336 GRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 710 GRAGKSGVAITFLGNEDSDVMYDLKQMLMKSSISRVPEELRKHEAAQSK 758


>gi|195166521|ref|XP_002024083.1| GL22752 [Drosophila persimilis]
 gi|194107438|gb|EDW29481.1| GL22752 [Drosophila persimilis]
          Length = 597

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/419 (20%), Positives = 160/419 (38%), Gaps = 17/419 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   G+   T +Q   L    +++ ++  A TGSGKT+AF   + + L    
Sbjct: 130 LLPRLQQNVLSYGFSQPTPIQMQALPVLFQKRALMACAPTGSGKTLAFLTPIINGL---- 185

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +   AL +APTRELA Q+ RE   L  +TG+            ++        +
Sbjct: 186 -RSHKTTGLRALVLAPTRELAQQIYRECSELTRETGLRTHFISKVSEAKQKHGAECKQKY 244

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            ++ +       +  +   +  LK V     DE   L       F               
Sbjct: 245 DILISTPNRVRFLLQQQPPLLDLKGVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSHPQ 304

Query: 187 ATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVALSDRDNAIVNI 238
             ++    T      K A+R              +   +       + + S +  A+ N+
Sbjct: 305 KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATDTVQQELLFVGSESGKLVAMRNL 364

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +R       +VF  ++    +  + L      V  +  E SQ +R N ++  R+G   V 
Sbjct: 365 VRQGLQPPVLVFVQSKDRAKQLFEELLYDGINVDVIHAERSQHQRDNCVRAFREGNIWVL 424

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRR 355
           I T++  RGID   + LVI+ +      + +HR GRTGRAGR G ++    Q+     R 
Sbjct: 425 ICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQDDTANLRS 484

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              + + +  +V       ++ +R+ +A+   + PL  + I    +    +   +   +
Sbjct: 485 IALIIKNSGGTVPEYML-QMKKVRKSEARIRAKKPLEREDISTKIRPEASIEATQKSAK 542


>gi|309359591|emb|CAP32649.2| hypothetical protein CBG_13909 [Caenorhabditis briggsae AF16]
          Length = 835

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 185/480 (38%), Gaps = 21/480 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++G+   T +Q   +   +  KDV+  ++TGSGKT AF + +   L   +
Sbjct: 31  LDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKGRD 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG+  A  +GG  +  +   +     
Sbjct: 91  TK-----GIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHENPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL   I    L +  ++ VV DEAD + ++GF+D +   L   P+ R+ L+FS
Sbjct: 146 ILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205

Query: 187 ATISPAITTLAKNYQKDAV--------------RVNIASENRQHSDIDYRAVLVALSDRD 232
           AT+   +   AK    D +               +                       R 
Sbjct: 206 ATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLSRCSICAEFGKFRK 265

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +           K  +VFC+T   V     +L         +  +L    R   +Q   +
Sbjct: 266 SENFETRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKFHE 325

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + TDVAARG+D+P L+ VI+    S  +  +HR GR  RAGR G ++ +I  + 
Sbjct: 326 KQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVARAGRSGTAISLIANDE 385

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                 LF      + +    S     E    R+    + L++       + D      D
Sbjct: 386 LPYLTDLFMFLGKPIKFATDGSEYKEDETLIGRVPDSIVSLET--EFFNSIHDNNEEMID 443

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
             + A   +  +      P   +   +         +           D         +S
Sbjct: 444 LRQKATNAMMKYTRTRQPPSAESARRVKQDIRTDSVECAPHPFLKADGDKQSNDILNRIS 503


>gi|169642132|gb|AAI60762.1| LOC100127243 protein [Xenopus laevis]
          Length = 638

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/416 (25%), Positives = 196/416 (47%), Gaps = 23/416 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++   P V+G  +   GY   T +Q  ++   L E+D+L SA TGSGKT AF L     
Sbjct: 225 FDHCQFPPVLGSNIKAAGYEVPTPIQMQMIPVGLMERDILASADTGSGKTAAFLLPAIIR 284

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L + D      +P AL + PTRELAVQ+  + +  +     +  A+ +GG+ +  +   
Sbjct: 285 CLEKKD------SPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHR 338

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++ TPGRL + I    +N+  LK +++DEAD ML +GF+  +  IL+ +    
Sbjct: 339 LKQAVQIIIATPGRLLEIINQDCVNLGDLKILIVDEADTMLKMGFQQQVLDILEHASHDH 398

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI   I    K   +D VR+ +  +N+  S++          +   +   I+N
Sbjct: 399 QTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCSNVRQIVLWVEEPSKKKKLFEILN 458

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      +      + VA+  + SQ ER   LQ +  G   V
Sbjct: 459 DSKLFQPPVLVFVDCRLGADLLSDAICKITGLECVAMHSDKSQMERMKILQGLLQGEYDV 518

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++  + +  +H+ GR GR G +G ++ +I +N +    
Sbjct: 519 VVSTGVLGRGLDLVNVKLVVNFDMPPSMDEYVHQIGRAGRLGHRGTAITLINRNNRSLFW 578

Query: 358 RLFREANVSVVWEPA-----------PSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            L +    +    P              V+    RD ++++     LD I+  +++
Sbjct: 579 DLVKRVQPTGSLLPPQLLNSPYLQEQKKVDERGRRDKEKVVTGDQILDLIRKHDRR 634


>gi|315045866|ref|XP_003172308.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
 gi|311342694|gb|EFR01897.1| ATP-dependent RNA helicase DBP4 [Arthroderma gypseum CBS 118893]
          Length = 818

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 191/424 (45%), Gaps = 14/424 (3%)

Query: 1   MKIFENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           ++ F ++P  + EA    LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF +
Sbjct: 49  IESFTDLP--LSEATRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLV 106

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L     +++      A+ I+PTRELA+Q+   L  +         + IGG S+  
Sbjct: 107 PVLENLF--RKQWTEYDGLGAMIISPTRELAIQIFEVLRKIGRHHTFSAGLVIGGKSLQE 164

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           E+  L     +V      L    +    +  +++ +VLDEAD ++D+GF+  ++ I++  
Sbjct: 165 EQERLGRMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHL 224

Query: 177 PKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           PK+R+ ++FSAT +  ++          + + V+ A+ +   S +    V+  L D+ + 
Sbjct: 225 PKERQTMLFSATQTKKVSDLARLSLQDPEYISVHEAASSATPSTLQQHYVVTPLPDKLDT 284

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRD 292
           + + +R       IVF S+   V    +   +    +  L     Q++ +          
Sbjct: 285 LWSFIRSSVKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSA 344

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
            +     ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P  
Sbjct: 345 SKNSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSE 404

Query: 352 MQRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                 RL  ++  +  +   A   ++I+ +      +DP      Q      V  +  +
Sbjct: 405 EIGMLSRLEQKKIPIEKINIRANKQQSIKHQLQNMCFKDPQLKYLGQKAFTSYVKSIYIQ 464

Query: 411 HDPE 414
            D E
Sbjct: 465 KDKE 468


>gi|77166040|ref|YP_344565.1| DEAD/DEAH box helicase-like [Nitrosococcus oceani ATCC 19707]
 gi|254436366|ref|ZP_05049872.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76884354|gb|ABA59035.1| DEAD/DEAH box helicase-like protein [Nitrosococcus oceani ATCC
           19707]
 gi|207088056|gb|EDZ65329.1| DEAD/DEAH box helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 431

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 113/366 (30%), Positives = 185/366 (50%), Gaps = 3/366 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + + + + G+   T +Q   L   L  +DV   AQTG+GKT +F LA    LL E
Sbjct: 15  NLAEALIQGIQKAGFAICTPIQALALPLLLAGEDVAGQAQTGTGKTASFLLATMQCLLRE 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P  L +APTRELA+QV ++ ++L   T +      GG +  ++R  L+ G 
Sbjct: 75  -PSAGAGQQPRGLIVAPTRELALQVSKDAQFLGQYTNLKCVAVHGGANYRKQRHLLEQGC 133

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--L 183
            I++GTPGRL D+ + + +    ++ VVLDEAD M DLGF  DI +IL   P   +   +
Sbjct: 134 DILIGTPGRLIDYYQQRIIGFKKIQVVVLDEADRMFDLGFIRDIRYILRRLPPPDKRLGM 193

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA  Y  +   + I  +      I  R    A  ++ + ++ + +   
Sbjct: 194 LFSATLSLRVMELAYEYMNNPQLLRIEPQKVTVDKITERVYFPANEEKISLLLALFKRLV 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            ++AIVF +T+    +    L  + F+   LS ++ Q +R   L   +D    + +ATDV
Sbjct: 254 PRHAIVFTNTKHVAEKVWGYLEGNGFKAALLSSDVPQGKRQRLLAAFQDRIYPILVATDV 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +  +  V + +L  +PE+ +HR GRT RAG  G++V    ++       +    
Sbjct: 314 AARGLHISTVTHVFNYDLPQDPEDYVHRIGRTARAGASGLAVSFACEDYAFSLPDIEEYI 373

Query: 364 NVSVVW 369
              VV 
Sbjct: 374 GHKVVP 379


>gi|328912646|gb|AEB64242.1| DEAD-box RNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 192/379 (50%), Gaps = 14/379 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   F+  N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+ L
Sbjct: 10  MKETKFDGYNLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLL 69

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCIGGVS 113
            + + +   +D         A+  APTRELA Q+ +E   +        +     IGG  
Sbjct: 70  PILNRIDPGSDTV------QAVITAPTRELANQIYQEALKITQGAEDEQIRTKCFIGGTD 123

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLDLGF +D+++I 
Sbjct: 124 KQKSIDKLKTQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDLGFLEDVDYIG 183

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P++ +ML+FSATI   +    K Y ++    ++  +      I++  V     D+D 
Sbjct: 184 SRMPEELQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDK 243

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +++        IVF +T+ +     K L E   ++  L G L+ +ER   ++ + D 
Sbjct: 244 LLFDMMSNLNPYLGIVFANTKNTADHIAKYLTEKGMRIGLLHGGLTPRERKKVMKQINDL 303

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +   + +
Sbjct: 304 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDE 363

Query: 354 RRAERLFREANVSVVWEPA 372
               RL +   +   +   
Sbjct: 364 DALVRLEK-MGIEFAYAEL 381


>gi|322701026|gb|EFY92777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Metarhizium
           acridum CQMa 102]
          Length = 712

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 184/415 (44%), Gaps = 34/415 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +PQ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 270 MRSWEESGLPQRLLDIVDRVGYKEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL 329

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +         +    P AL +APTREL  Q+  E +      G      +GG S+  
Sbjct: 330 LVYISDLPPLTEVNKNDGPYALILAPTRELVQQIETEAKKFAEPLGFRCVSIVGGHSLEE 389

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NGA I+V TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD+ 
Sbjct: 390 QAFALRNGAEIIVATPGRLVDCIERRLLVLSQCCYIIMDEADRMIDLGFEESVNKILDAL 449

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------- 216
           P            +  +       +    +  + +                         
Sbjct: 450 PVSNEKPDTDDAENAQLMKSYLGSRDKYRQTMMYTATMPPLVERIAKKYLRRPATATIGN 509

Query: 217 -------SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                   +     V      +      + +   A   IVF + + +     + +    +
Sbjct: 510 AGEAVDTVEQRVEFVSGEDRRKKRLQEILSKNEFAPPIIVFVNIKRNCDAVARDIKSMGW 569

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R G  +V +ATD+A RGID+PD+ LV++  ++++ E+  
Sbjct: 570 STVTLHGSKTQEQREAALASVRSGATQVLVATDLAGRGIDVPDVSLVVNFNMATSIESYT 629

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           HR GRTGRAG+ G+++  +            ++  ++++S V E     EA + +
Sbjct: 630 HRIGRTGRAGKSGVAITFLGNEDADVMYDLRQMLSKSSISKVPEELKRHEAAQSK 684


>gi|313674605|ref|YP_004052601.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
           4126]
 gi|312941303|gb|ADR20493.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
           4126]
          Length = 371

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 120/375 (32%), Positives = 202/375 (53%), Gaps = 10/375 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLAL 58
           M   E  I   + + LSE    N T +QE ++   ++   D++  AQTG+GKT AFGL +
Sbjct: 1   MTFKELGISDKLIKGLSELNIQNPTKIQELVIGHLMQNTGDLVAQAQTGTGKTAAFGLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRE 117
              +  ++D+        A+ ++PTRELA Q+  +L      +  V   V  GG  + ++
Sbjct: 61  LERINPKDDKI------QAVILSPTRELAQQIKHQLFKFTKYSDKVFMEVVFGGEKIEKQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            ++L+    I+V TPGRL D IR K ++I   K +VLDEADEML +GF+ D+EFIL++  
Sbjct: 115 IQNLKRPTQILVATPGRLNDLIRRKAVDIRDAKLMVLDEADEMLSMGFKKDLEFILNTMK 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIV 236
            K+ + +FSATI   I  + K Y +   +   AS N   +  I ++ V     ++   + 
Sbjct: 175 HKKDIWLFSATIPTDIKYIIKQYLEPNAKQIKASGNELVNEKIMHQYVPCDTDEKMMVLD 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+    +  I+FC+T+ S     + L         L G++ Q++R   ++  ++ +  
Sbjct: 235 YFLKTQKKERGIIFCNTKNSARALHEQLNARKISTGILEGDMHQKDRDKEMRAFKNKKLD 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATDVAARGID+ +L  V+H E+    +  +HRSGRT RAG+ G+S+ +  +N   + 
Sbjct: 295 LLIATDVAARGIDVANLAFVVHYEIPKQVDYYVHRSGRTARAGKTGISMALCTKNEVTQI 354

Query: 357 ERLFREANVSVVWEP 371
           +++ +E  + +   P
Sbjct: 355 KKIQQELGIKIKPVP 369


>gi|254491606|ref|ZP_05104785.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
           DMS010]
 gi|224463084|gb|EEF79354.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
           DMS010]
          Length = 415

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/356 (30%), Positives = 185/356 (51%), Gaps = 3/356 (0%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP-ASA 74
           ++ G+   T +Q   L   L  +DV   AQTG+GKT+AF LA    LL      +     
Sbjct: 2   AQAGFEFCTPIQAQSLPLLLSGRDVAGQAQTGTGKTIAFLLATFQRLLEIPAADNWDKKQ 61

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL +APTRELA+Q+ ++ E L  + G+ +A+  GG    R+R ++  G  +++GTPGR
Sbjct: 62  PRALILAPTRELAIQIAKDAELLNVEAGLRIAIAHGGKDYQRQRDNITEGVDVLIGTPGR 121

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM--LMFSATISPA 192
           L D+ +    ++  + A+VLDEAD M DLGF  D+ + L   PK  +   ++FSAT+S  
Sbjct: 122 LLDYQKQGVFSLKFIDAMVLDEADRMFDLGFIKDVRYFLRRIPKPEKRLGMLFSATLSYK 181

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           ++ LA  +  +  +V +A E      I+      A  ++   ++ ++     +  I+F +
Sbjct: 182 VSELAYEHMNNPEKVQVAPEKMMGDRIEEWVYYPANDEKVPLLLALIERLQPERGIIFVN 241

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +       L  +  +   LSG++ Q++R   L+  +DG     +ATDVAARG+ +P 
Sbjct: 242 TKQAADVVWGYLEGNEHKAALLSGDVPQKKREQLLKHFQDGEFPFLVATDVAARGLHIPA 301

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           +  V + +L  + E+ +HR+GRT RAG  G+++    +        +       + 
Sbjct: 302 VTHVFNYDLPQDVEDYVHRTGRTARAGASGVAISFACEEFVFSLPEIEDYIKHKLP 357


>gi|145501031|ref|XP_001436498.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124403638|emb|CAK69101.1| unnamed protein product [Paramecium tetraurelia]
          Length = 553

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/395 (27%), Positives = 190/395 (48%), Gaps = 17/395 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+++     I + LS+      T +Q   L   L  +D++  A +G GKT+ F L  
Sbjct: 107 IKSFQDLRVDHRILKILSKMKIKKPTPIQMQGLPTVLMGRDIIGVAPSGQGKTLVFLLPA 166

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               + E  +        P AL + P+ ELA+      +            G+   + IG
Sbjct: 167 LLQCVDEQMKMPIIRGEGPFALILLPSHELAILTYELAKQYCQKFQKKGFPGIHCLLGIG 226

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+ +  + + ++NG HIV+GTPGR+ D +  K +N+   + +VLDEAD MLD  F  +I 
Sbjct: 227 GMDMSSQLQSIKNGVHIVIGTPGRISDMVNKKKINMDLCRFIVLDEADRMLDQVFELEIR 286

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            IL+     R+ ++FSAT+   I    K    D + +N+    + + ++    + V   +
Sbjct: 287 NILEHFTGPRQTMLFSATLPKKIQEFTKQTLVDPLVINVGRSGQINLNVIQEILYVKQEE 346

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + +++ L+       I F   +  V    + L     +VV L G   Q++R+ AL+  
Sbjct: 347 KLHYLLDSLKKTTPPVVI-FSEHQNDVDDINEYLLIKGVEVVGLHGGKQQEDRTKALKQF 405

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +G+  V +ATDVAA+G+D PD++ VI+ ++  + E+ +HR GRTGR G+ G +   + +
Sbjct: 406 LNGQKDVLVATDVAAKGLDFPDIKHVINYDMPKDIESYIHRIGRTGRQGKTGRATTFVNR 465

Query: 351 NMQR----RAERLFREANVSVVW--EPAPSVEAIR 379
             +       + L  E+   +    E   S E + 
Sbjct: 466 QQEESILLDLKYLLVESKQKIPQFLEKLKSDEDLN 500


>gi|73953311|ref|XP_851746.1| PREDICTED: similar to Nucleolar RNA helicase II (Nucleolar RNA
           helicase Gu) (RH II/Gu) (DEAD-box protein 21) [Canis
           familiaris]
          Length = 784

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/581 (23%), Positives = 239/581 (41%), Gaps = 38/581 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q          KD++  A+TG+GKT +F + L   
Sbjct: 189 FSNFPISEETIKLLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIVK 248

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 249 LQGELQDRKRGRAPQVLVLAPTRELANQVSRDFSDITRKLA--VACFYGGTPYGGQIERM 306

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 307 RNGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDS 366

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 367 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 426

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++ ++          G++ Q++R   L+  R
Sbjct: 427 VIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVSIRQDAQSLH-GDIPQKQREITLKGFR 485

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 486 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFYQHK 545

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +  ++ ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 546 EEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKL 602

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 603 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF--VTMILRCSIEMPNISYAWKELKE 660

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    ++ + ++  L    G+                 +V    +  ++      +  
Sbjct: 661 QLGEDIDSKVKGMV-FLKGKQGVC---------------FDVPTAALTEIQEKWHDSRRW 704

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
           QL     E+P+  G +  G+++   Q   ++  +  +  S+
Sbjct: 705 QLSVAT-EQPELEGPR-EGYRNFRGQREGSRGSRGQREGSR 743


>gi|70949030|ref|XP_743963.1| snrnp protein [Plasmodium chabaudi chabaudi]
 gi|56523710|emb|CAH74477.1| snrnp protein, putative [Plasmodium chabaudi chabaudi]
          Length = 667

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 25/380 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  
Sbjct: 248 SNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQ 307

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 308 LPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELR 367

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P     
Sbjct: 368 RGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLK 427

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----------------- 225
               A            ++   +    ++      +   R  L                 
Sbjct: 428 SEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRS 487

Query: 226 ------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                      +    +  L        IVF + +       K +++  F+ +AL G   
Sbjct: 488 IEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFKAIALHGGKV 547

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 548 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 607

Query: 340 RKGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 608 MKGLAISFVTEQDTHLFYDL 627


>gi|327392908|dbj|BAK10330.1| ATP-independent RNA helicase DbpA [Pantoea ananatis AJ13355]
          Length = 439

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 198/389 (50%), Gaps = 13/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY ++T VQ A L   L  +DV   A+TGSGKT AFG+ L   +       S      A
Sbjct: 1   MGYTSMTPVQAATLPAILDGRDVRAQAKTGSGKTAAFGIGLLQHID------SAHFQTQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
           L + PTRELA QV   L  L   T  +  + + G      +RD   +  HIVVGTPGR+ 
Sbjct: 55  LILCPTRELADQVSNVLRQLARFTRNIKILTLCGGQPMSAQRDSLVHAPHIVVGTPGRIL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DHI+ + L +  L+ +VLDEAD ML++GFRDD+E I+ ++P  R+ L+FSAT    I  L
Sbjct: 115 DHIKRETLKLESLRTLVLDEADRMLEMGFRDDMETIIAATPASRQTLLFSATWPEGIAAL 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           ++ +Q++A+ V     +   +             + + ++++L      + +VFC+T+  
Sbjct: 175 SQRFQREALSVVTEEVSELPAIEQQFIEASHGE-KLSLLISLLSERQPSSCVVFCNTKRE 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L       + L G+L Q++R   L    +G  RV +ATDVAARG+D+  L LV
Sbjct: 234 CDDIAAALNARDISALPLHGDLEQRDRERVLIRFANGSGRVLVATDVAARGLDIKLLSLV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ +L+ +PE  LHR GRT RAG +G +V  +  +   RA  L       + W  A S+ 
Sbjct: 294 VNYQLAWDPEVHLHRIGRTARAGEQGAAVSFVAADEMARAHALEDFLQQKLPWVAASSL- 352

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
               + + + L   +    I G  K  + 
Sbjct: 353 ----KKSSKALPAAMMTLCIDGGRKAKIR 377



 Score = 55.8 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 20/64 (31%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                +  G K K     ++  L   +G     IG I +     +V + A         +
Sbjct: 363 MMTLCIDGGRKAKIRPGDILGALTGEAGYRADQIGKIDLTATHAYVAIEAAQAKQALVKL 422

Query: 526 KLDK 529
           K  K
Sbjct: 423 KQGK 426


>gi|311694220|gb|ADP97093.1| DEAD/DEAH box helicase domain protein [marine bacterium HP15]
          Length = 457

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 206/395 (52%), Gaps = 21/395 (5%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   +   L++ G+   T +Q   + P L  KD++  A+TGSGKT AFG++L
Sbjct: 1   MSSFNDFGLSTAMCSNLNQLGFAQPTEIQAKAIAPGLAGKDIIAMAKTGSGKTAAFGISL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
              L           A  AL + PTRELA QV + +  L   +  + V    GGV++  +
Sbjct: 61  VERLNP------RLFAVQALVLCPTRELADQVAKAIRELARARDNIKVLTLCGGVAIGPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L +GAHIVVGTPGR+ DH+R + L++  LK VVLDEAD MLD+GF++ +E IL  +P
Sbjct: 115 IGSLSHGAHIVVGTPGRIQDHLRKQTLSLVRLKTVVLDEADRMLDMGFQEAMEDILSQTP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ +MFSAT    I  L+K YQK  V V            +    +   S + +AIV 
Sbjct: 175 PSRQTMMFSATWPAPIRELSKQYQKSPVDVRAEDTGDNPDIEELFYEVSPQS-KSDAIVA 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     ++ IVFC+T+         L E  F  + L G+L Q++R + L    +    +
Sbjct: 234 LLSERQPESCIVFCTTKQQCDDMAAELGERGFSALPLHGDLEQRDRDSVLVRFGNQSCSI 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L LVI+AE + +PE   HR GRTGRAG +G +V         +  
Sbjct: 294 LVATDVAARGLDIKSLPLVINAEPARDPEVHTHRIGRTGRAGEQGHAVTFCTPAQGHKIT 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           R+  E   SV W            D +++L  PL 
Sbjct: 354 RIESERGRSVTW-----------GDTEKLLATPLK 377



 Score = 62.3 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 23/66 (34%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  ++ G K K     ++  L   +G+  +++G I +     FV V          
Sbjct: 381 PAMKTLCIAGGRKDKVRPGDVLGALTGEAGLPGKAVGKIDLFDHQCFVAVEKSLAAKALA 440

Query: 524 TVKLDK 529
            ++  K
Sbjct: 441 RLESGK 446


>gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1]
 gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1]
          Length = 383

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 113/367 (30%), Positives = 197/367 (53%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + +A+   G+  +T +Q+ +L   L   D +  AQTG+GKT AF +++ + LL  
Sbjct: 9   NLHPQLKQAIDALGFTQMTPIQQKVLKYTLAGHDAIGRAQTGTGKTAAFLISVINDLLNN 68

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQN 123
             +         AL +APTRELA+Q+  +   L   T + V   +GGV   ++++   + 
Sbjct: 69  PIQEQRYRGEVRALILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKKPLNEK 128

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D +  K + +  ++ +V+DEAD +LD+GF   ++ I+  SP+K +  
Sbjct: 129 FIDILVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQ 188

Query: 184 --MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
             MFSAT S  +  LA+ +  + V V I  E + ++D++ R  +VA  D+   + +ILR 
Sbjct: 189 TLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNNDVEQRVYMVAKQDKYRLLQDILRD 248

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F + R  V R    L +  ++V  LSGE++Q +R   L+  + G+  + IAT
Sbjct: 249 EPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEIAQDKRLKMLEQFKQGKNNIMIAT 308

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L    ++ +HR GRTGRAG +G+S+  + ++       + +
Sbjct: 309 DVAGRGIHVDGVSHVVNFTLPEQSDDYVHRIGRTGRAGTQGVSISFLSEDDAFYLPEIEK 368

Query: 362 EANVSVV 368
                + 
Sbjct: 369 AIGKKLP 375


>gi|242005744|ref|XP_002423722.1| predicted protein [Pediculus humanus corporis]
 gi|212506907|gb|EEB10984.1| predicted protein [Pediculus humanus corporis]
          Length = 1130

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 133/356 (37%), Gaps = 12/356 (3%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            ++   I + L   GY N T +Q   +   L  + VL  A TGSGKT AF + +   L   
Sbjct: 758  HVSPNIVKNLENSGYNNPTPIQAQAIPAMLEGRQVLACAPTGSGKTAAFLVPIFYHL--- 814

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +         + + PTRELA Q  RE   L   T + + +            +     
Sbjct: 815  --KGPTKKGYRCVIVCPTRELARQTYRECLRLSEGTRLKINIIKKVTLDKENYSNTSKKF 872

Query: 126  HIVVGTPGRLCDHIRGKGLN-------ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             I++ TP RL   ++ +             +          +     +  + +    S  
Sbjct: 873  DILITTPNRLVYLLKQEPPKVNLKSVEWLIVDESDKLFEAGIRGFRDQLAVIYNACDSSV 932

Query: 179  KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +R +  +           +N +   +       +   +       +   + +  A  N+
Sbjct: 933  IKRAMFSATQTPHLTKWCRRNLKNLVLINVGVRNSAVETVKQELLFVGCEAGKLVAFRNL 992

Query: 239  LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +        +VF  ++         L      V  +  + +Q++R N ++  R+G+  V 
Sbjct: 993  INRGLTPPVLVFVQSKERAQELFNELVYDGINVDVIHSDRTQKQRDNVIRSFREGKIWVL 1052

Query: 299  IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            I T++  RGID   + LV++ +   +  + +HR GRTGRAGR G ++    Q+   
Sbjct: 1053 ICTELMGRGIDFKGVNLVVNYDFPPSSVSYIHRIGRTGRAGRPGRAITYFTQDDTH 1108


>gi|154418331|ref|XP_001582184.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916417|gb|EAY21198.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 640

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 186/368 (50%), Gaps = 6/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L  RG+   TS+Q   +   L  +D++  A TGSGKT+AF +     +LA+ 
Sbjct: 108 LPAPLMSHLRLRGFKQPTSIQCQAIPCILSGRDIIGCAVTGSGKTLAFIIPCLLHVLAQP 167

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +A  A+ ++PTRELA Q   E + +++      A  +GG  +  + R ++NG++
Sbjct: 168 PTGQYEAA--AVILSPTRELAYQTHIECQKIFSLMDKKSACLVGGNDIENQLRAIKNGSN 225

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGR  D +     NI  +  +V+DEAD M DLGF   +  I +   K R+ LMFS
Sbjct: 226 VIIATPGRFIDLLSSSAFNIKKVSYLVIDEADRMFDLGFEPQVIRIAERMRKDRQTLMFS 285

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI-LRYHGAK 245
           AT    +  +A+   ++++ + +   N    +I+   ++    ++ N+++ I   Y    
Sbjct: 286 ATFPHTVERIARKLLQNSIEIVVGLRNVVTPNINQSILVTNEDNKFNSLLKILGDYTTQG 345

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF +T+         L +  + V  L G +   +R++ L   R+GR  V + T V A
Sbjct: 346 QALVFTNTQDRAEDLFGKLNKSGYSVGLLHGSMDSPDRNSILHDFREGRFSVLVLTSVGA 405

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FRE 362
           RGID+  +  VI+ +   +  + +HR GRTGRAG+KG +   +    +  A  +    ++
Sbjct: 406 RGIDIASIICVINYDAPDHEADYVHRVGRTGRAGKKGYAFTFVTDKDKTAAAGIKNAMKK 465

Query: 363 ANVSVVWE 370
           +   +  +
Sbjct: 466 SGCEIPKD 473


>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
 gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
          Length = 749

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 151/613 (24%), Positives = 257/613 (41%), Gaps = 60/613 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +  A    GY   T +Q A +   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 123 NVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPILERLLFR 182

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R     A   L I PTRELAVQ+   +E L   T +  ++ +GG+S   +   L+   
Sbjct: 183 PRRIP---AIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEVALRTHP 239

Query: 126 HIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IVV TPGR+ DH+R         L  +VLDEAD +L+LGFR++I  ++   P +R+ ++
Sbjct: 240 DIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPSRRQTML 299

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRY 241
           FSAT++  ++ L K   K  VR++      + S +    + +      D++  ++++   
Sbjct: 300 FSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIVLSLCSR 359

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+    R   +      +   L G L+Q +R  AL+  R       IAT
Sbjct: 360 SLKSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQEVDFLIAT 419

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +E VI+ E     +  +HR GRT RAGR G SV ++ +  +   + + +
Sbjct: 420 DVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAK 479

Query: 362 EANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEK----KMVDVLLAKHDPEK 415
            A   +        S+ + RER  +++ +D + +   + +EK      ++   A++  + 
Sbjct: 480 RAGSKLQKRVVAATSIASWRER-IEKMEEDLVQILQQEREEKFLRKAEMEANKAQNMMDY 538

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGR-------------DRFRDDSRAFKVGGGSRDN 462
            A  F R  +    + ++ T ++ VS               D   +  +  K    +   
Sbjct: 539 EAEIFARPKKTWFQSQQDKTRIAKVSPASYGPALKKKAISVDEGEELQKKEKRKAETEKA 598

Query: 463 FKGSSWFSLSVGSK---QKAEARWLMPMLCRSSGINRQSIGAI-RVQPDLTFVEVSADGV 518
                   L    +   + A+         +   +  +  G   +  P  + V++     
Sbjct: 599 LPRKKRRRLEAARETAEEGADEDE-----NQHRKVRGRERGKKNKNNPGTSLVDI----- 648

Query: 519 DLLRRTVKLDKGIQLKYLGGEKP------------------DFRGYKSSGFKSKNSQDGA 560
              RR   +    + +  G   P                  D     S      + +D  
Sbjct: 649 -GYRRAKAVKAAEKARQEGRFTPSKKSSDDRKRKKKKKDPEDEMVRSSKPEAGASRRDAT 707

Query: 561 TKRFKRFKGASKN 573
            KR KR  G SK 
Sbjct: 708 NKRPKRKPGVSKR 720


>gi|291000284|ref|XP_002682709.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
 gi|284096337|gb|EFC49965.1| dead box-containing ATP-dependent RNA helicase [Naegleria gruberi]
          Length = 955

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/458 (25%), Positives = 199/458 (43%), Gaps = 23/458 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + E LS+      T +QE  + P L  K+V+  +QTGSGKT AF L +   L  + 
Sbjct: 143 ISSWLEEHLSKLQINMPTVIQEKCIPPTLAGKNVIGMSQTGSGKTAAFALPIIQNLAKD- 201

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL I P RELA+Q+ +  E L     + VA+ +GG+   ++   L +  H
Sbjct: 202 -----MYGIYALIITPARELAIQIKQHFEILAGDLPIRVALLVGGMDYLKQAHLLDSSPH 256

Query: 127 IVVGTPGRLCDHIRGKGLN--ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           IVVGTPGR+ D IR    +     +K +V DEAD +  + +  D++ IL  S  KR+ L+
Sbjct: 257 IVVGTPGRIEDAIRTFNNDGYFKKIKYLVFDEADRIFSMDYSLDLDRILSVSNPKRQTLL 316

Query: 185 FSATISPAITTLAKNYQKDA-----------VRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +SAT++  +  LAK    ++              +     +   ++    + +    +D 
Sbjct: 317 YSATMNNQVKKLAKMAMSNSGKTKEEREQSLYIYDACKLFQLADNLSQYYLFMPEHVKDA 376

Query: 234 AIVNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             V ++        +IVF S         +          +L    SQ+ER   L+  R 
Sbjct: 377 YFVQLINSLPDNSISIVFFSDITQCELMNQTCRLLGISCDSLHASKSQKERFAVLKYFRK 436

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            R +    TDVA RG+D+P +  VI+ +L    +  +HR GRT RAGR G+ + +I Q  
Sbjct: 437 RRLKFLFCTDVANRGLDIPAVGYVINYDLPDTTDKYVHRVGRTARAGRLGVCISLISQFE 496

Query: 353 QRRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +R + +  + +V +  +EP    +A  E     + +       I   +    D      
Sbjct: 497 VKRIKAIESDTDVQMAKYEPFDEEQAESEEHLLSVAEQKCKA-KITLLDSGFYDRFEKVK 555

Query: 412 DPEKIAAGFLRIHRAGLCAP-EEITPVSLVSGRDRFRD 448
             +++ A   +  +        +    +    +DRF D
Sbjct: 556 SKQQLTADLRKQAQIFFEKRSMDQLKQNSGRWKDRFND 593


>gi|224052119|ref|XP_002191015.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Taeniopygia guttata]
          Length = 589

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 148/596 (24%), Positives = 238/596 (39%), Gaps = 63/596 (10%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  Q   + L+ RG   L  VQ     P    KDV+  A+TG+GKT +F L L   
Sbjct: 24  FSNFPLSQNTVKLLTARGIKYLFPVQVKTFQPIYDGKDVIAQARTGTGKTFSFALPLIEK 83

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L +         AP  L + PTRELA QV ++ + L  K    VA   GG     +   L
Sbjct: 84  LQSVTQDGRRGRAPKVLVLVPTRELATQVAKDFKNLTKKLS--VACFYGGSPYKEQLDLL 141

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DHI+   L +S +K VVLDE D MLD+GF + +E IL SS K+  
Sbjct: 142 KSGIDILVGTPGRIQDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEILGSSYKRGS 201

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI------ 235
                  +  A               +   +         R                   
Sbjct: 202 ENNPQTLLFSATCPRWVYDVAKKYMRDEYEQIDLIGKKAQRTATTVEHLAIQCRSSQRAG 261

Query: 236 ----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +        IVFC T+   +      +          G++ Q++R   L+  R
Sbjct: 262 VLGDIIQVYSGSRGRTIVFCETKKEANELAMNASLKQDAQSLH-GDIPQKQREITLKGFR 320

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V IAT+VAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ + +  + 
Sbjct: 321 NGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICLFQRR 380

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER---DAQRILQD--PLFLDSIQGDEKKMVDV 406
            +   +++  +A ++      PS   + +    DA+++L+   P  +D  +   ++++D 
Sbjct: 381 EEDLLKQVEHKAGITFKRVGVPSATDVIKASSSDAKKLLEAVPPAAVDYFRKSAEELIDE 440

Query: 407 ----LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD--RFRDDSRAFKVGGGSR 460
                        I+       R+ L +      + L    +    R   R  K   G  
Sbjct: 441 KGAVAALAAALAHISGAAHIQQRSLLNSTAGFVTMVLKCSIEMHNMRYAWRGLKEQLGEE 500

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
            + K S+                 M  L    G+                 ++  D +  
Sbjct: 501 VDNKVSA-----------------MRFLKGKMGVC---------------FDIPVDELSN 528

Query: 521 LRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKS----KNSQDGATKRFKRFKGASK 572
           ++   +  +  QL     E P+   Y   G +      NS+ G  KR   FK  ++
Sbjct: 529 IQEQWRDTRRWQLSVA-SELPELEEYPQEGGRGFSRFGNSRQGDFKRNSWFKSGNR 583


>gi|152971432|ref|YP_001336541.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896027|ref|YP_002920763.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae NTUH-K2044]
 gi|262040311|ref|ZP_06013562.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150956281|gb|ABR78311.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548345|dbj|BAH64696.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259042420|gb|EEW43440.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 443

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/408 (30%), Positives = 191/408 (46%), Gaps = 9/408 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAI 193
             +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT       
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIK 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               +  ++        S   +     +      +  +   +VN+L+   A  AIVF   
Sbjct: 198 DFAERLLEEPVEVSANPSTRERKKIHQWYYRADDIEHKTKLLVNLLQQPEATRAIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD+
Sbjct: 258 RERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSVVW 369
             V + ++    +  LHR GRTGRAG+KG ++ ++  +           +       V+ 
Sbjct: 318 SHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEEPLKARVID 377

Query: 370 EPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           E  P+  A  E+   +  +  L      + DEK+   V     D + I
Sbjct: 378 ELRPTTRAPSEKLTGKPSKKVLAKRAQKKKDEKEKPRVKKRHRDTKNI 425


>gi|145517226|ref|XP_001444496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411918|emb|CAK77099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 434

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 180/384 (46%), Gaps = 10/384 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++   + +   +   G+   +++Q+  + P +  KDVL  AQ+G+GKT  F +  
Sbjct: 55  VETFEDLTLSKDLLRGIFSYGFERPSAIQQKAIKPIILGKDVLAQAQSGTGKTGTFTIGA 114

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +         + +AP RELA Q+   ++ +     +    CIGG S    R
Sbjct: 115 LQRIDPNQRK------TQVIILAPVRELAKQIYDVVKGIGQYLNIEAFCCIGGTSTQETR 168

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              + G HI++ TPGRL D ++ K L+ + ++ +V+DEAD+MLD GF D+   IL   P 
Sbjct: 169 EKCKQGVHIIIATPGRLIDMMKNKYLDATFMRLLVVDEADQMLDQGFSDNFAEILKMVPG 228

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             ++ +FSAT    I            A  +    +        +   +     +   +V
Sbjct: 229 DIQIALFSATFPQEIIELSKQFLRDGTAKILVKKEQLTLEGIRQFYIAIQQEDQKFKVLV 288

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      +I+FC+++ +V      L    F V  +  ++ Q+ER   +Q  + G AR
Sbjct: 289 ELYKNLTVSQSILFCNSKKTVDDLYDKLTAEGFTVSKIHSQMEQKEREQVMQEFKKGAAR 348

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + ++TD+  RGID+  L LVI+ E     E  +HR GR GR GRKG+++ ++ Q      
Sbjct: 349 ILVSTDLMGRGIDVQQLSLVINYEFPRLKEQYIHRVGRAGRYGRKGVAINMVAQQEANLL 408

Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380
             + +  N  +   P    E  +E
Sbjct: 409 LEVEKYYNTKIDEMPKDLAEVEKE 432


>gi|304414180|ref|ZP_07395548.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
 gi|304283394|gb|EFL91790.1| ATP-dependent RNA helicase [Candidatus Regiella insecticola LSR1]
          Length = 431

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/365 (28%), Positives = 178/365 (48%), Gaps = 3/365 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-AE 65
           +   + E L   G+ N T +Q   L   L  +DV   AQTG+GKT+AF  +    LL   
Sbjct: 16  LHPQVIEVLENEGFHNCTPIQALTLPITLTGQDVAGQAQTGTGKTLAFLASTFHHLLSFP 75

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +     + P AL + PTRELA+Q+  +   L   +G+ + +  GG    ++ + L+ G 
Sbjct: 76  AEEGKMINQPRALIMGPTRELALQIHADAVSLSQSSGLKLGLAYGGDGYDKQLKVLEKGV 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--KKRRML 183
            I++GT GR+  + +   +N++ ++ VVLDEAD M D+ F  DI ++  S P   KR  +
Sbjct: 136 DILIGTTGRIIGYAKQGYINLAAIQVVVLDEADRMCDISFIKDIRWLFHSMPSADKRLNM 195

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+S  +  LA     +   V +    +    I       +  ++   +  ++    
Sbjct: 196 LFSATLSCRVHELAFELMHNGQYVEVEPLQKTGHRIQEELFYPSNEEKMRLLQTLIEEEW 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +T+       + LA    +V  L+G+++Q++R   L+    G   + +ATDV
Sbjct: 256 PDRCIIFSNTKHRCEDIWRHLAADGHRVGLLTGDVAQKKRQRILEEFTKGDLDILVATDV 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P +  V + +L  + E+ +HR GRTGRAG  G S+ +  +        +    
Sbjct: 316 AARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSISLACEEYALNLPAIEGYI 375

Query: 364 NVSVV 368
              + 
Sbjct: 376 GHRIP 380


>gi|284046175|ref|YP_003396515.1| DEAD/DEAH box helicase [Conexibacter woesei DSM 14684]
 gi|283950396|gb|ADB53140.1| DEAD/DEAH box helicase domain protein [Conexibacter woesei DSM
           14684]
          Length = 460

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 201/371 (54%), Gaps = 9/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +  AL++RG      +QE ++   L   DVL+ + TGSGKT+AFG+ L 
Sbjct: 3   TSFADLGSSNAVVTALTKRGIATAFPIQELVVPDVLAGHDVLIQSPTGSGKTLAFGVPLM 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A + R      P AL +APTRELA+Q+  E   +     + +    GGV + R+ R
Sbjct: 63  DRIEATDKR------PSALVLAPTRELALQIVDETREIAHARALSITAVYGGVGLERQAR 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    +HI+V TPGRL D ++ +   ++++K ++LDEAD MLD+GFR  ++ I+ ++   
Sbjct: 117 NA-ARSHILVATPGRLEDLLQRRAFTLANVKLLILDEADRMLDMGFRPAVDRIVKATNAN 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ ++FSAT+   +  +A  Y  DA R  +A    + +DID+R + V    + + +V  L
Sbjct: 176 RQTMLFSATLKGEVDRIANEYTHDARRHELAPAPERVADIDHRFLPVLHEHKLDHLVQEL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+HG    +VF  T+    R  K L     + VA+ G+ +Q +R  AL     G   V +
Sbjct: 236 RHHGRGLTLVFVRTKRGADRLVKRLRAQNVESVAMHGDKTQGQRERALSRFERGEVDVLV 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+  +  VI+ +   + E  +HR GRTGRAG  G+ V  +  +  +   ++
Sbjct: 296 ATDVAARGIDVNGVSHVINFDAPEDREGYVHRIGRTGRAGATGIGVTFVMADQAKDMGKI 355

Query: 360 FREANVSVVWE 370
             E  +   +E
Sbjct: 356 AVELGLEREFE 366


>gi|308501725|ref|XP_003113047.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
 gi|308265348|gb|EFP09301.1| hypothetical protein CRE_25460 [Caenorhabditis remanei]
          Length = 852

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 172/389 (44%), Gaps = 19/389 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  +++ EA+ +  Y   T +Q   +   +  +DVL  A+TGSGKT A+       ++ +
Sbjct: 272 SFDKLLMEAIRKSEYEQPTPIQAMAIPSAISGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
            D       P+A+ + PTRELA+QV +E +         V+    GG    +       G
Sbjct: 332 PD-LKSGEGPVAVIVVPTRELAIQVFQEAKRFCKVYNINVICAYGGGSKWEQSNELQNEG 390

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD----------------D 168
           A +VV TPGR+ D ++    N      +V DEAD M D+GF                   
Sbjct: 391 AEMVVCTPGRIIDLVKMGSTNFLRTTFLVFDEADRMFDMGFGMLFIQDPYLKYKKSSEAQ 450

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA- 227
           ++ I D     R+ LMFSAT    +  LA++   D VR+        ++DI+ +  ++  
Sbjct: 451 VKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQS 510

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              + + ++  L    +   ++   T+   +       +     V L      Q   N  
Sbjct: 511 QEVKFHWLIRNLVEFASIGKVLIFVTKKLDAEDVAKKLKLKDFEVILLHGDMLQAERNDN 570

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
            +    ++ + +ATDVAARG+D+ ++  VI+ +++ + +  +HR GRTGRAG KG +  +
Sbjct: 571 LLKFRKKSPILVATDVAARGLDIAEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTL 630

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVE 376
           + +        L +         P P ++
Sbjct: 631 VTEKDIEMVGHLVKNLESVSQEVPKPLLD 659


>gi|301111464|ref|XP_002904811.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095141|gb|EEY53193.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 681

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/433 (26%), Positives = 203/433 (46%), Gaps = 22/433 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I     + L  RG   L  +Q    +  +  KD++  A+TG GKT+AF L +   LL + 
Sbjct: 113 ICDETKKNLQARGIHTLFPIQAMTFDKIVDGKDLMGRARTGMGKTLAFALPVIELLLQDK 172

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +   AP  + +APTRELA QV  E E        V     GG S   +    ++G  
Sbjct: 173 RPRARGRAPRVVCMAPTRELAKQVATEFELTGPSLSTVC--IYGGASYQSQNNAFRSGVD 230

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM---- 182
           I+VGT GR+ DHI    L + + + ++LDEAD ML++GFR+D++ +  +  + +      
Sbjct: 231 ILVGTTGRVIDHIDRGNLRLHNCEFLILDEADTMLEMGFREDVQKVFTAMDQVKNESTGK 290

Query: 183 -----LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AI 235
                   +              + + V +   S+++  +D+ + A+      R    A 
Sbjct: 291 RQTLLFSATIPKWVKDVADKYMKKAEYVNLVKDSDDQASTDVQHIAIPCHWQGRPTLLAN 350

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  +        I+F  T+   +             V   G+++Q++R   ++  R+GR 
Sbjct: 351 LLGVYAKKDSRTIIFAETKKDCNELAVHPEIKTDCQVL-HGDIAQEQRETTMKAFREGRL 409

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMSVFVIP 349
           R+ IATDVAARG+D+ +++LVI++E         + +  +HRSGRTGRAG+KG+ + +  
Sbjct: 410 RLLIATDVAARGLDM-NVDLVINSEPPRKMSGMADVDTYVHRSGRTGRAGKKGICITLYT 468

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLL 408
              + +  ++ R+     + +  P  E + +  A + L++   +D S+    ++    LL
Sbjct: 469 NRQRDQLNQIERKIGNKFIMKGPPDQEDLIKASAAKALKEIDNVDPSMIEIFQEKARELL 528

Query: 409 AKHDPEKIAAGFL 421
              +PEK  A  L
Sbjct: 529 ETMEPEKCLAAAL 541


>gi|260800277|ref|XP_002595060.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
 gi|229280302|gb|EEN51071.1| hypothetical protein BRAFLDRAFT_125765 [Branchiostoma floridae]
          Length = 875

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 174/370 (47%), Gaps = 5/370 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F +    + +   + +  Y   T +Q   +   L  +D++  A+TGSGKT AF   +
Sbjct: 235 VTSFAHFGFDEQLLHQIRKSEYSQPTPIQAQGIPVALSGRDIIGIAKTGSGKTAAFVWPM 294

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++ + +   P   P+ L  APTREL+ Q+  E +      G+ V    GG S+  + 
Sbjct: 295 LVHIMDQKE-LEPGDGPIGLICAPTRELSQQIYAEAKRFGKCYGLSVVAAYGGGSMWEQT 353

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ GA IVV TPGRL D ++ K  N+  +  +V DEAD M D+GF   +  I +    
Sbjct: 354 KALQLGAEIVVCTPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANHVRP 413

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT    I  L ++   D ++V        + D+     +          +  
Sbjct: 414 DRQTLLFSATFKKRIERLCRDILMDPIKVVQGDLGEANEDVQQIVEIFPAGPPKWQWLTR 473

Query: 239 L--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
               +    + ++F + +A+       L    F+   L G++ Q ER+  +   +     
Sbjct: 474 RLVEFTSVGSVLIFVTKKANSEELASNLKAQDFEAGLLHGDMDQSERNKVISDFKKKTIP 533

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+P ++ V++ +++ + +   HR GRTGRAG K   +  +  N     
Sbjct: 534 VMVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGNKVTDISTLKANSDNPL 593

Query: 357 ERLFREANVS 366
            +L    +++
Sbjct: 594 FQLIEACDMT 603


>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
 gi|150273402|gb|EDN00530.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/365 (33%), Positives = 199/365 (54%), Gaps = 9/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++GYV  T VQ   +   +  KDV+  A TG+GKT AFG+ +   +  E+
Sbjct: 19  LSAEVMKAIDKKGYVRATPVQAGAIPYFMEWKDVIAKAPTGTGKTFAFGIPMVEHIDPES 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
           D      A  AL +APTRELA+Q+  EL  L     GV      GG  + ++   L+   
Sbjct: 79  D------AVQALVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKKHP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ + + +  ++ VVLDEAD MLD+GF  D+  ILD    ++ + +F
Sbjct: 133 QIVVATPGRLMDHMKRRTVKLDKVETVVLDEADRMLDMGFIHDVTRILDQIKSRKNLGLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGA 244
           SATIS  +  ++  YQ+D V + +  +     DI      L    D+   +V +L + G 
Sbjct: 193 SATISREVMDISWVYQRDPVEIVVRPDEENKPDIQQYRIDLEGRGDKLETMVALLTHGGY 252

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + AI FC+T+    R + +L        A+ G++ Q+ R   LQ  R+G+ RV +ATDVA
Sbjct: 253 ERAIAFCNTKNMTDRLSGLLQMRGITAQAIHGDIQQRIREKTLQAFREGKMRVLVATDVA 312

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFREA 363
           ARG+D+ D+++V + ++    E  +HR GRTGRA R G++  ++     Q + E++ +  
Sbjct: 313 ARGLDIDDVDVVFNYDVPDEIEYYIHRIGRTGRAKRHGVAYSLVVGITEQMKMEQIAKNT 372

Query: 364 NVSVV 368
              + 
Sbjct: 373 KADIT 377


>gi|123468442|ref|XP_001317439.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121900173|gb|EAY05216.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 416

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 189/386 (48%), Gaps = 13/386 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   Q + +A    G+     +Q   + P + +KD+  +A+TGSGKT A+ L +  
Sbjct: 7   TFSDLGLCQPMVDACKSLGWKYPMPIQIKTIPPAIEKKDICGTAETGSGKTGAYMLPIFH 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +      F       AL  APTRELA Q+      +     V V   IGGV    + + 
Sbjct: 67  HMWENPHSF------FALVFAPTRELATQIDHVTRDIGKDIKVRVCTIIGGVDEDSQVKA 120

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI--SHLKAVVLDEADEM-LDLGFRDDIEFILDSSP 177
           L+   H+VV TPGRL   IR     I  + ++ +V DEAD M  +  F+ DI+ IL    
Sbjct: 121 LKAQPHVVVATPGRLARLIRNNPKVIPLNKVECLVFDEADNMLREPSFQTDIQLILSKLN 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +  +FSAT+   I  LAK    D VR+++ S N     +    V+     ++  +V 
Sbjct: 181 STHQTYLFSATMPEEIEQLAKQTMSDPVRLSLTSVNTVARTLTEHLVISETGKKEATLVA 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++  +  K  I+F  +  + +  + +L+   F+ +   G+L Q+ER NA+   ++G  RV
Sbjct: 241 LMNQYPDKQTIIFVGSCKTATIISTLLSNLNFRTIVYHGQLPQRERINAIDRFKNGDYRV 300

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +AT+V +RG+D+P ++LVI+ EL    E  +HR GR GRA R G++V +I  N      
Sbjct: 301 LVATNVGSRGLDVPHVDLVINYELPEEHEEYIHRVGRAGRAERSGVAVTIITANEVVGYI 360

Query: 358 RLFREA--NVSVVWEPAPSVEAIRER 381
           RL       +     P   +E + E+
Sbjct: 361 RLENFLKKKIPKKDIPLEKIEEVTEK 386


>gi|154509558|ref|ZP_02045200.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799192|gb|EDN81612.1| hypothetical protein ACTODO_02090 [Actinomyces odontolyticus ATCC
           17982]
          Length = 581

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 192/376 (51%), Gaps = 9/376 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +      I +AL ++G  +   +Q   L P L   D++  A+TG+GKT+ FG+ + 
Sbjct: 63  KSFADFGVTDPIVDALEDQGITHPFPIQALTLGPALERHDIIGQAKTGTGKTLGFGIPVL 122

Query: 60  STLLAENDRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
             ++A ++         + P AL I PTREL  QV ++L          +    GGV+  
Sbjct: 123 EDVIAPDEEGYEDLLNPNKPQALIILPTRELTKQVAQDLREAAKYLSTRIVEIYGGVAFE 182

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ GA IVVGTPGRL D +R   L++S ++ VVLDEADEMLDLGF  D+E +L  
Sbjct: 183 PQIEALERGADIVVGTPGRLIDLLRKGHLHLSGVETVVLDEADEMLDLGFLPDVETLLSR 242

Query: 176 SPKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            P+ R  ++FSAT+   +                 +   +N+  + +      V   ++ 
Sbjct: 243 VPENRHTMLFSATMPGPVVALARRFMVQPTHIRAQDPDDQNQTVNTVKQVIYRVHAMNKV 302

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++FC T+ + +R  + L    F V +L G+L Q  R  AL+  R+
Sbjct: 303 EVVARILQAEGRGRTVIFCRTKRTAARLGEDLTARGFAVGSLHGDLGQGAREQALRAFRN 362

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG  G +V  +  + 
Sbjct: 363 GKVDVLVATDVAARGIDVDDVTHVINYQCPEDEKIYIHRIGRTGRAGNSGTAVTFVDWDD 422

Query: 353 QRRAERLFREANVSVV 368
             R   + +   + V 
Sbjct: 423 TPRWSLISKALGLGVP 438


>gi|119191710|ref|XP_001246461.1| hypothetical protein CIMG_00232 [Coccidioides immitis RS]
 gi|118575177|sp|Q1EB31|DBP4_COCIM RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 806

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 184/399 (46%), Gaps = 11/399 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  +P      + LS   +  LT +Q   +   ++ +D+L +A+TGSGKT+AF + + 
Sbjct: 48  ESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+ 
Sbjct: 108 ENLY--RKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQE 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +    + +H++ +VLDEAD ++D+GF+  ++ I++  PK+
Sbjct: 166 RLGRMNILVCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKE 225

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+ ++FSAT +  ++ LA+   +D   +++       +        V+  L ++ + + +
Sbjct: 226 RQTMLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWS 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRA 295
            +R       +VF S+   V    +        +  L     Q++ +           + 
Sbjct: 286 FIRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKY 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
               +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + +  
Sbjct: 346 SCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEG 405

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
             +   +  + +      +++A +++     LQ+  F D
Sbjct: 406 MLKRLEQKKIPIERI---NIKAKKQQSIMNQLQNMCFKD 441


>gi|281182661|ref|NP_001162381.1| ATP-dependent RNA helicase DDX18 [Papio anubis]
 gi|162415904|gb|ABX89268.1| DEAD box polypeptide 18 (predicted) [Papio anubis]
          Length = 670

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/427 (25%), Positives = 212/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSVRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    +F P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLANGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|157734244|gb|ABV68940.1| ATP-dependent DEAD-box helicase [Apocynum venetum]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/377 (28%), Positives = 176/377 (46%), Gaps = 7/377 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   T +Q+  + P ++ +D +  AQTGSGKT    L++        
Sbjct: 39  LKEDLIRGIYAYGFEKPTPIQQRAVMPLIQGRDAIAQAQTGSGKTSMIALSVCQVAD--- 95

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL ++PTRELA Q  R L  L  +  +   VCIGG SV  +   L+ G H
Sbjct: 96  ---TSVRDVQALILSPTRELATQTERVLIALGDRININAHVCIGGNSVGEDIHKLEKGVH 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGRL D I+ + L    +K +VLDEAD ML  GFRD+I       P + ++ + +
Sbjct: 153 VVSGTPGRLIDMIKRRTLRTRVIKILVLDEADRMLGRGFRDNIYDAYRYLPPELQVCLIT 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   +  +   +  D V++    E+     I    V +     + + + +I       
Sbjct: 213 ATLPHELIEMTSKFMTDPVKILAKREDLTLDGIKQWFVAVEREDWKFDTLCDIYDSLTIS 272

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+TR  V   T  +  + F    +  ++  +ER   +   + G  +  I TDV A
Sbjct: 273 LAVIFCNTRRKVDWLTDKMHSNQFTASVMHSDMPNKEREVIMNEFKGGATKALITTDVWA 332

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  + +VI+ +L  N E  +HR GRTG+ GRK   +  +     R    + +    
Sbjct: 333 RGIDVQQVGIVINYDLPQNRELYIHRIGRTGKFGRKSAVINFVKSEDIRLLRDIEQYYTS 392

Query: 366 SVVWEPAPSVEAIRERD 382
            +   P    E +  + 
Sbjct: 393 QIDDMPMQVAELLISQR 409


>gi|21910935|ref|NP_665203.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
 gi|28895375|ref|NP_801725.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
 gi|21905142|gb|AAM80006.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28810621|dbj|BAC63558.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 200/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEA 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDACKQIAKHSQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDTVDKIAASFPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +S +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGISPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --MGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|326481784|gb|EGE05794.1| ATP-dependent RNA helicase DED1 [Trichophyton equinum CBS 127.97]
          Length = 594

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++   +   GY+  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 IKSFEDAGLHPIMLNNIKLCGYIVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 186 LSRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 246 LRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELL 305

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 306 KSDWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLATDYVRIRIGRVGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 366 LNVTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 426 DRTQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSANHGGIDEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 486 GRTARIGNPGLATSFYNDKNSDIASDLVK 514


>gi|190346939|gb|EDK39127.2| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 186/400 (46%), Gaps = 10/400 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   GY   T++Q   +      +D++  A TGSGKT+A+ + +A  L++ 
Sbjct: 251 NLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISS 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       + IAPT ELA+Q+ + L  +   + + V +    V+       +    
Sbjct: 311 PK--TKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANK 368

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRML 183
             +++ TP RL D ++ + +++S ++ +V+DEAD++ D GF +   E +   +   RR  
Sbjct: 369 FDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTS 428

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           MFSATI   +  +A +  KD +R+ +  +    + ID + V     +     +  +    
Sbjct: 429 MFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQG 488

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  +          L      V  +  E + ++R  A++  ++G A V I T
Sbjct: 489 EFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITT 548

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
           DV ARG+D   + LVI+ ++    +  +HR GRTGR G++G +V    +  +   +    
Sbjct: 549 DVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLN 608

Query: 359 LFREANVSVVWEP-APSVEAIRERDAQRILQDPLFLDSIQ 397
           + +++     +     S+E + +++ Q+I Q  +    I 
Sbjct: 609 VMKQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKIS 648


>gi|15240418|ref|NP_200302.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75333773|sp|Q9FFT9|RH32_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 32
 gi|9758271|dbj|BAB08770.1| RNA helicase-like protein [Arabidopsis thaliana]
 gi|332009172|gb|AED96555.1| DEAD-box ATP-dependent RNA helicase 32 [Arabidopsis thaliana]
          Length = 739

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L +  YV++T VQ A +   L  +D+L +A+TGSGKT+AF + +   
Sbjct: 73  FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R+SP      + I+PTRELA Q    L  +         + IGG       ++ 
Sbjct: 133 L--HRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKER 190

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +  +I+V  PGRL  H+          L+ ++LDEAD +LD  F+  ++ I+   PK R
Sbjct: 191 VHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHR 250

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT +  +           + + V+  +     + +    ++V +  + + + + 
Sbjct: 251 QTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSF 310

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-LQMMRDGRARV 297
           ++ H     +VF ST+  V    +   +    +   S      +     +      R  V
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSV 370

Query: 298 CIATDVAARGIDL-PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
              TDV ARG+D    ++ V+  +   +  + +HR GRT R   +G S+  +  + ++  
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMI 430

Query: 357 ERLFREANVSVVWEPA 372
           E+L +EA V +    A
Sbjct: 431 EKL-QEAKVPIKLIKA 445


>gi|329116579|ref|ZP_08245296.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
 gi|326906984|gb|EGE53898.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus parauberis
           NCFD 2020]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 200/460 (43%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  Q I +AL    +   T VQ+ ++      +D++  ++TGSGKT  F L +   L  +
Sbjct: 7   NFKQYIQDALDAIKFTEPTDVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                  +    L  AP+RELA Q+    + + + +   + +         + +  +   
Sbjct: 67  ------LAQVQVLITAPSRELATQIFDAAKQIASHSDKEIRLVNYVGGTDKLRQIEKLKV 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIVVGTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVVGTPGRIYDLVKSGDLEIHKATTFVVDEADMTMDMGFLDTVDKIASALPKAVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      I+   V     D ++ I++IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVIEQIKTQTVIADTIENWLVSTKGRDNNSQILSILQNM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++    +  +ATD
Sbjct: 241 NPYLAMLFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFQYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  +I+  +  +    +HR GRTGR G  G ++ +   +     + L + 
Sbjct: 301 LAARGIDIEGVSHIINDAIPQDLSFFVHRVGRTGRNGMSGTAITLYKPSDDSDIKELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 360 --LGIQFVP-------------KVLKNGQFEDTYDRDRRQSREKSYKKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I  V     R   R + RA          
Sbjct: 405 KKKVKPAYKKKIQWVVDEKRRKERRAEGRAKGRAERKSKK 444


>gi|154293477|ref|XP_001547268.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
 gi|150845271|gb|EDN20464.1| hypothetical protein BC1G_13890 [Botryotinia fuckeliana B05.10]
          Length = 636

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 27/385 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +  V+ E +   GY   T +Q+  L    ++ DV+  AQTGSGKT AF + + S 
Sbjct: 156 FEDAGLHPVMLENIKLAGYHVPTPIQQYCLPAIKKDHDVVACAQTGSGKTAAFLIPILSK 215

Query: 62  LLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           L+ +  + +                    PL + + P+RELA Q+  E      ++ +  
Sbjct: 216 LMGKAKKLAAPRPNPATYVPDRDNYVRAEPLVVVVCPSRELATQIFDEARRFCYRSMLRP 275

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLG 164
            V  GG  +  +   L  G  +++GTPGRLCD IR         LK +V+DEADEMLD  
Sbjct: 276 CVVYGGGPLVEQLSQLAKGCDLLIGTPGRLCDMIRRPHALTLKRLKYMVIDEADEMLDSS 335

Query: 165 FRDDIEFIL----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           + ++++ I+            M+  +     A     ++   D VR+ +      H++I 
Sbjct: 336 WEEELKQIMSGGDQEEGNIIYMMFSATFPKMARAIAKEHLAHDHVRIRVGRAGSSHTNIK 395

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              + V  + +  A+ ++L        I+F +T+ S       L  +     ++  + +Q
Sbjct: 396 QDIIYVEAASKRQALYDLLLSTPPARTIIFVNTKRSADEIDDYLFNNDLPCTSIHSDRTQ 455

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSGRTG 336
           +ER ++++  R+G+  + IAT V+ARG+D+ ++  VI+ +L SN     E   HR GRTG
Sbjct: 456 REREDSIRAFRNGKMPILIATGVSARGLDVHNVMHVINFDLPSNDHGGIEEYTHRIGRTG 515

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFR 361
           R G  G++        +  AE L +
Sbjct: 516 RIGNMGLASSFYNDRNEDIAEALVK 540


>gi|330828193|ref|YP_004391145.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
 gi|328803329|gb|AEB48528.1| ATP-dependent RNA helicase DbpA [Aeromonas veronii B565]
          Length = 459

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 131/371 (35%), Positives = 204/371 (54%), Gaps = 8/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AFGL L + L   
Sbjct: 10  NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFGLGLLAKLNVN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +E+  L      V  V   GG     +   L  G
Sbjct: 70  RLEV------QALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTPTAPQSATLSFG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI VGTPGR+  H+    L +S LK +VLDEAD MLD+GF +DI  ++  +P++R+ L+
Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEDINRVISYAPERRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +++  Q++ V V++ S +   +  + +   V    R +A+  +L ++  
Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAI-EQKLYEVPAGQRLDALTWLLSHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDVA
Sbjct: 243 SSCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R   +     
Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNFIEEYQQ 362

Query: 365 VSVVWEPAPSV 375
             +      S+
Sbjct: 363 APMPLGDLDSI 373



 Score = 62.7 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 27/77 (35%)

Query: 453 FKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVE 512
             +G   +         S+  G K K  A  ++  L    GI    +G I++    ++V 
Sbjct: 371 DSIGRDIKPIAPQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADVGKIQISEQYSYVA 430

Query: 513 VSADGVDLLRRTVKLDK 529
           V         + ++  K
Sbjct: 431 VKRSVASAALKRLQEGK 447


>gi|146419062|ref|XP_001485496.1| hypothetical protein PGUG_03226 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 676

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 186/400 (46%), Gaps = 10/400 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   GY   T++Q   +      +D++  A TGSGKT+A+ + +A  L++ 
Sbjct: 251 NLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISS 310

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       + IAPT ELA+Q+ + L  +   + + V +    V+       +    
Sbjct: 311 PK--TKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANK 368

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRML 183
             +++ TP RL D ++ + +++S ++ +V+DEAD++ D GF +   E +   +   RR  
Sbjct: 369 FDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTS 428

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           MFSATI   +  +A +  KD +R+ +  +    + ID + V     +     +  +    
Sbjct: 429 MFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQG 488

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  +          L      V  +  E + ++R  A++  ++G A V I T
Sbjct: 489 EFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITT 548

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
           DV ARG+D   + LVI+ ++    +  +HR GRTGR G++G +V    +  +   +    
Sbjct: 549 DVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLN 608

Query: 359 LFREANVSVVWEP-APSVEAIRERDAQRILQDPLFLDSIQ 397
           + +++     +     S+E + +++ Q+I Q  +    I 
Sbjct: 609 VMKQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKIS 648


>gi|90962087|ref|YP_536003.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
 gi|90821281|gb|ABD99920.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
          Length = 440

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/395 (27%), Positives = 188/395 (47%), Gaps = 10/395 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + I +AL E  +   T VQ  ++   L+ K V+  +QTGSGKT  F L +   L A+
Sbjct: 8   NFKEYIYQALDEINFKEPTEVQARLIPTILKGKSVVGQSQTGSGKTHTFLLPIFQNLNAQ 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
            D         A+   P+RELA Q+    + L   +     +     G     +  +   
Sbjct: 68  KDEV------QAVITTPSRELAYQIYEAAKQLAKFSPENIWIQNYVGGTDKQRQIEKLKS 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   +V+GTPGR+ D +R   L+I +   +V+DEAD  LDLGF  + + I  + PK  +M
Sbjct: 122 HQPQLVIGTPGRILDLVRENALDIHNAHYLVVDEADMTLDLGFLKETDAIASTLPKDLQM 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    + Y  + V   +A+++     ID   +     DR+  I ++L   
Sbjct: 182 LVFSATIPEKLRPFLRKYMYNPVIEVVANKHVISPTIDNWLISTKGRDRNKLIYDLLTMG 241

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+      T  L     +V  + G +  ++R   ++ +++   +  +ATD
Sbjct: 242 EPYLALVFANTKERADELTNYLRSQGLKVAKVHGGIQPRQRKRIMREIQNLDYQFVVATD 301

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++  + E  +HR GRTGR G KG ++ +   + ++  + L   
Sbjct: 302 LAARGIDIEGVSHVINDDIPEDLEFFVHRVGRTGRNGMKGTAITLYEPSEEKLIDELE-S 360

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
             V  V +   + E +   D  R  +     +S+ 
Sbjct: 361 MGVHFVPKAVKNGEIVDSYDRNRREKRQTRKESMD 395


>gi|255083352|ref|XP_002504662.1| predicted protein [Micromonas sp. RCC299]
 gi|226519930|gb|ACO65920.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/364 (30%), Positives = 178/364 (48%), Gaps = 13/364 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
           +   +   + +Q       L   D++  A TGSGKT+AFGL     +LA+  + +P  +P
Sbjct: 64  ATANFKKPSPIQAQSWPIVLSGHDMVGIAATGSGKTMAFGLPALMQILAQ-PKCAPG-SP 121

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG--GVSVHRERRDLQNGAHIVVGTPG 133
             L +APTRELA Q  +  E      GV      G       ++      G  ++V TPG
Sbjct: 122 QCLVLAPTRELAQQTAKVFEDAGTACGVRCVCVYGGAPKWEQKKLMQQGGGCAVIVATPG 181

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    + +  +  +VLDEAD MLDLGF  +I  I   +   R+ +MFSAT   +I
Sbjct: 182 RLRDFMNDGDVKLDKVTMLVLDEADRMLDLGFEPEIREIAGKTRADRQTVMFSATWPTSI 241

Query: 194 TTLAKNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-----KNA 247
             LA  +  + V+V I     +    +     +V  +++D  +  +L+ +          
Sbjct: 242 QGLAAEFMCNPVKVRIGAEGLKASHSVTQVVEVVEPNEKDAHLARVLKKYLGGKKPVPRT 301

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF   +   +R  + L    +Q   + G++SQ++R  +++  + G + + IATDVAARG
Sbjct: 302 LVFALYKKECARLHENLRRQNWQAACIHGDMSQRDRELSVEAFKSGSSPLLIATDVAARG 361

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREAN 364
           +D+  +E VI+       E+ +HR GRTGRAG+ G++     Q+ + RA  L    REA 
Sbjct: 362 LDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGQTGLAHTFFTQHDKARAGELANVLREAG 421

Query: 365 VSVV 368
             V 
Sbjct: 422 AEVP 425


>gi|260220807|emb|CBA28741.1| hypothetical protein Csp_A08660 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 652

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 128/416 (30%), Positives = 191/416 (45%), Gaps = 46/416 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK---------DVLVSAQTGSGKTVAFGLA 57
           +   + +A  + GY   T+VQ+  +   +            D++VS+QTGSGKT AF L 
Sbjct: 65  LAPALVQACKDLGYTQPTTVQQKAIPLAMAGVGSEKAGKFVDLMVSSQTGSGKTAAFLLP 124

Query: 58  LASTLLAE------------------------------------NDRFSPASAPLALAIA 81
           +  TLL +                                    N R   A  P AL + 
Sbjct: 125 VLHTLLTQQAEAEEAERAEYEQACADAAAKGEPAPKRAKRKDPTNPRNFKAPTPGALIVC 184

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           PTRELA QV  +   L      +    I G   ++ +      A++VV TPGRL D  R 
Sbjct: 185 PTRELAQQVAHDAIDLVQHCRGLRVANIVGGMPYQLQIAKLQNANLVVATPGRLLDLQRS 244

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             + +  ++ +V+DEAD MLDLGF DD+  I   +  +++ +MFSAT +P I  LA    
Sbjct: 245 MQIKLDQVQFLVVDEADRMLDLGFADDLAEINQLTIDRKQTMMFSATFAPRIQQLAARVM 304

Query: 202 KDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
           ++  RV I S   +H++I            +   + + LR      A+VF ST+      
Sbjct: 305 REPQRVTIDSPQEKHANIKQVLFWADNAQHKRKLLDHWLRDTTINQAVVFASTQIECDGL 364

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V +  
Sbjct: 365 ANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNFG 424

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           L    E+  HR GRTGRAGR G++V       +R+   +   +   +  E  P +E
Sbjct: 425 LPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEAYSRQPIKPETIPGLE 480


>gi|238881563|gb|EEQ45201.1| hypothetical protein CAWG_03515 [Candida albicans WO-1]
          Length = 765

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/400 (24%), Positives = 188/400 (47%), Gaps = 11/400 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   + L E  +V+LT +Q+  +   L+ +D++ +A+TGSGKT+AF + +  +
Sbjct: 50  FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIES 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+   ++ +      AL ++PTRELAVQ+   L  +         +  GG  V  E+  +
Sbjct: 110 LI--RNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERV 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V              G+  S+L+ +VLDEAD  LD+GF+  I+ IL   P  R+
Sbjct: 168 SRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQ 227

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNI 238
            L+FSAT S ++  LA+    +  ++ ++S+    +  +      V V L ++ + + + 
Sbjct: 228 TLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSF 287

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRAR 296
           ++ H     +VF S+   V    +        +  +      ++ S           +  
Sbjct: 288 IKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHA 347

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRR 355
              ATD+ ARG+D P ++ V+  +   +    +HR GR+ R GRKG S+  ++P   +  
Sbjct: 348 CLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGM 407

Query: 356 AERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            +RL   +    ++     S ++IR +      +DP+  +
Sbjct: 408 LKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKN 447


>gi|68470912|ref|XP_720463.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
 gi|68471370|ref|XP_720233.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|74627403|sp|Q5AF95|DBP4_CANAL RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46442091|gb|EAL01383.1| hypothetical protein CaO19.10227 [Candida albicans SC5314]
 gi|46442332|gb|EAL01622.1| hypothetical protein CaO19.2712 [Candida albicans SC5314]
          Length = 765

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/400 (24%), Positives = 188/400 (47%), Gaps = 11/400 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   + L E  +V+LT +Q+  +   L+ +D++ +A+TGSGKT+AF + +  +
Sbjct: 50  FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIES 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+   ++ +      AL ++PTRELAVQ+   L  +         +  GG  V  E+  +
Sbjct: 110 LI--RNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDVQFEKERV 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V              G+  S+L+ +VLDEAD  LD+GF+  I+ IL   P  R+
Sbjct: 168 SRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQ 227

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNI 238
            L+FSAT S ++  LA+    +  ++ ++S+    +  +      V V L ++ + + + 
Sbjct: 228 TLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSF 287

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRAR 296
           ++ H     +VF S+   V    +        +  +      ++ S           +  
Sbjct: 288 IKSHLKSKILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQHA 347

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRR 355
              ATD+ ARG+D P ++ V+  +   +    +HR GR+ R GRKG S+  ++P   +  
Sbjct: 348 CLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRSARFGRKGKSLLMLLPSEEEGM 407

Query: 356 AERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
            +RL   +    ++     S ++IR +      +DP+  +
Sbjct: 408 LKRLKIHKIEPKLMNIKQKSKKSIRPQLQSLCFKDPVMKN 447


>gi|295399200|ref|ZP_06809182.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110198|ref|YP_003988514.1| DEAD/DEAH box helicase [Geobacillus sp. Y4.1MC1]
 gi|294978666|gb|EFG54262.1| DEAD/DEAH box helicase domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215299|gb|ADP73903.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y4.1MC1]
          Length = 435

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 126/430 (29%), Positives = 201/430 (46%), Gaps = 26/430 (6%)

Query: 1   MK--IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK  +FE       I EA+ E  +   T +QE I+   LR K  +  +QTG+GKT A+ L
Sbjct: 1   MKETLFERFSFQPFIIEAIKELRFYKPTEIQERIIPIALRGKSAIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---- 112
            +   +  +        A  A+  APTRELA Q+  E+  +         +         
Sbjct: 61  PIIEKIDPDR------KAVQAVITAPTRELATQIYHEILKITKFCPSDRQITARCFIGGT 114

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
              +    L+   HIVVGTPGR+ D IR + L +     +V+DEAD MLD+GF  D++ I
Sbjct: 115 DKQKAIEKLKTQPHIVVGTPGRINDLIREQALLVRTANTLVVDEADLMLDMGFIVDVDQI 174

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
               PK+ +ML+FSATI   +    K Y ++   V++A +      I++  V +   D+ 
Sbjct: 175 AARMPKELQMLVFSATIPEKLKPFLKKYMENPEYVHVAPKQVAAEKIEHVLVPLRSRDKV 234

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L  +    AIVF +T+         L E   +V  L G+LS +ER   ++ +RD
Sbjct: 235 KLLHEMLLAYNPYLAIVFTNTKKMADEVADKLIEKGMKVGILHGDLSPRERKKMMKQIRD 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              +  +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  GM+  +   + 
Sbjct: 295 LEFQYIVATDLAARGIDIEGVSHVINYELPKDLQFYIHRAGRTARAGYTGMAATIYEPSD 354

Query: 353 QRRAERLFREAN-------VSVVWEPAPSVEAIRERDAQ-----RILQDPLFLDSIQGDE 400
           Q    +L +          +   W   P      +R+ Q     ++L        ++   
Sbjct: 355 QDAITKLEKMGIEFLHRDLIRGEWVDLPPWNRRSKREKQGGEIAQLLAKMKKAKQVKPGY 414

Query: 401 KKMVDVLLAK 410
           KK +   + K
Sbjct: 415 KKKLLAEMEK 424


>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
 gi|187036409|emb|CAP24509.1| hypothetical protein CBG_03667 [Caenorhabditis briggsae AF16]
          Length = 565

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 210/482 (43%), Gaps = 25/482 (5%)

Query: 1   MKI--FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M    F  +     I + L        T VQ A +   L   D+L  A+TG+GKT+AF +
Sbjct: 90  MTTRKFSELGVSSWITQQLQTMHIKTATPVQAACIPRILDGSDILGCARTGTGKTLAFAI 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L  +           AL + PTRELA Q+  +   +     +  +V +GG S+  
Sbjct: 150 PILQKLSIDP------YGIYALILTPTRELAFQIADQFTAVGKPITLKCSVIVGGRSLIH 203

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + R+L    HIVV TPGRL D I      I   ++  VLDEAD ML+  + D ++ I  S
Sbjct: 204 QARELSERPHIVVATPGRLTDLIESDPEVIAKKIQFFVLDEADRMLEGQYNDQLKPIFQS 263

Query: 176 SPKKRRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            P+KR+ L+ SATI+  I         +          +      ++ + V+  ++ +D 
Sbjct: 264 IPEKRQTLLLSATITQNINTLHKVSTRKPYFFEDKGKDDETTVDRLEQKFVVCPVAVKDA 323

Query: 234 AIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V +++ +  KN     ++F  T         +     F+V +L  ++ Q++R  AL  
Sbjct: 324 YLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSA 383

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R    +V I TDVA+RG+D+P ++LV++  +   P+  +HR GR+ RAGR G ++  + 
Sbjct: 384 FRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVT 443

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDV 406
           Q      + + +     +      S + + +   Q ++   +  L L++ +  E+K ++ 
Sbjct: 444 QYDVELLQAVEKTIGKKLDELKV-SAKHVTKYVTQVLVAKKEAELKLENQKFGERKEINR 502

Query: 407 LLAK----HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                    + E +      +    + + +            R  ++ R  K G   +  
Sbjct: 503 RKEMLMKGMNEEDVDRHLDEMKNRRVTSSKRKLEKIRGQLDRRRNENERNQKKGAAKKPK 562

Query: 463 FK 464
            +
Sbjct: 563 IE 564


>gi|127513380|ref|YP_001094577.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           loihica PV-4]
 gi|126638675|gb|ABO24318.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
          Length = 460

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 192/386 (49%), Gaps = 9/386 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +  +L   G    T +Q   +   L  +D++ S++TGSGKT+AF L     ++  
Sbjct: 20  SLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQRVI-- 77

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +      P  L + PTRELA QV  +L  L A T       +GG + + + + L    
Sbjct: 78  ATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALARDP 137

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR---M 182
           H VV TPGRL DH+  + L ++ L+ ++LDEAD MLDLGF + +  I  ++  KRR   M
Sbjct: 138 HFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRRQTLM 197

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +          A+  ++       AS            +   LS ++  +  +L+  
Sbjct: 198 FSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQLE 257

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  I+F +TR    R   VLAE  F   +LSGEL Q  R+  +     G+ ++ + TD
Sbjct: 258 PHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILVTTD 317

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERL 359
           VA+RG+DL ++ LVI+ ++    E  +HR GRTGRAG KG ++ ++        ++ +  
Sbjct: 318 VASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQNF 377

Query: 360 FREA-NVSVVWEPAPSVEAIRERDAQ 384
            R++   S + E AP  + ++++ +Q
Sbjct: 378 LRKSFEFSELEELAPKFKGLKDKPSQ 403


>gi|328855473|gb|EGG04599.1| hypothetical protein MELLADRAFT_78286 [Melampsora larici-populina
           98AG31]
          Length = 646

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 193/390 (49%), Gaps = 22/390 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F N P    +   +    Y   T VQ+  +      +D++  AQTGSGKT  F   +
Sbjct: 159 ITEFTNPPMDPHLLANIELARYKTPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPI 218

Query: 59  AST-----------LLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            S            + A+   +    A P AL +APTREL  Q+  E      ++ V  A
Sbjct: 219 ISAAFAKGPLPTAGMQAQGGGYGKRKAFPTALILAPTRELVSQIHEEARKFTYRSWVRPA 278

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
           V  GG  V ++ R ++NG  ++  TPGRL D I    +++S+++ +VLDEAD MLD+GF 
Sbjct: 279 VVYGGAEVGQQLRQIENGCDLLSATPGRLVDLIERGRISLSNIRYLVLDEADRMLDMGFE 338

Query: 167 DDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
             I  I          +R+ LMFSAT    I  LAK++ KD + +++        +I  +
Sbjct: 339 PQIRRIVTGEDMPGVHERQTLMFSATFPRDIQMLAKDFLKDYIFLSVGRVGSTSENITQK 398

Query: 223 AVLVALSDRDNAIVNILRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              V  +D+ + +++IL         +VF  T+         L    F   ++ G+ +Q+
Sbjct: 399 VEYVEDADKRSVLLDILTSMPQGGLTLVFVETKRMADMLEGFLVSSNFAATSIHGDRTQR 458

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           ER  AL+  R  R  + +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG  
Sbjct: 459 ERERALETFRSSRTPIMVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRAGNT 518

Query: 342 GMSVFVI---PQNMQRRAERLFREANVSVV 368
           G+S        +N+ R    L REA+  + 
Sbjct: 519 GVSTAFFNRGNKNIVRELIELLREAHQEIP 548


>gi|296387620|ref|ZP_06877095.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PAb1]
          Length = 523

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 201 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 260

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 261 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 320

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 321 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 380

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 381 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 441 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 500

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 501 LLGRKITCEMPPA 513


>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 480

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/375 (30%), Positives = 178/375 (47%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I + L   G+   T +Q       +   D++  A+TGSGKT  F L          
Sbjct: 53  FSDSIQKTLKSAGFERPTFIQSQAWPIAINGSDMICVAKTGSGKTCGFLLPSFHQYFQSK 112

Query: 67  DRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              +     P+ L +APTRELA Q+  E +      G+    C GG   + +   L+ G 
Sbjct: 113 ATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQIAALERGV 172

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM- 184
             V+ TPGRL D I  K  N+S++K VVLDEAD MLD+GF   I  I+ S P        
Sbjct: 173 ECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPDSTNRQTL 232

Query: 185 -FSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRY 241
            FSAT    I  LA ++  D +++N+   N    + DI  + ++ +  D+ + +  IL  
Sbjct: 233 LFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKDITQKIMMCSEDDKIDRLKEILTD 292

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +         L +  F V +L G+  Q ER+  +   + G  R+ IAT
Sbjct: 293 LKHSKVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIAT 352

Query: 302 DVAARGIDLPDLELVIHAELS---SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE- 357
           DVAARG+D+ D+ +V++ ++    +  E+ +HR GRTGRAG KG++  +     ++ A  
Sbjct: 353 DVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTMFTPGDKKLATQ 412

Query: 358 --RLFREANVSVVWE 370
              +  +A   V  E
Sbjct: 413 LVEILEKAEQEVPAE 427


>gi|82539888|ref|XP_724299.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478899|gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii]
          Length = 967

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 25/380 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  
Sbjct: 548 SNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQ 607

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 608 LPPLTYETSQDGPYALIIAPSRELAIQIYDETNKFASYCSCRTVAVVGGRNAEAQAFELR 667

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P     
Sbjct: 668 RGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLK 727

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----------------- 225
               A            ++   +    ++      +   R  L                 
Sbjct: 728 SEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRS 787

Query: 226 ------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                      +    +  L        IVF + +       K +++  F+ +AL G   
Sbjct: 788 IEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFRAIALHGGKV 847

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 848 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 907

Query: 340 RKGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 908 MKGLAISFVTEQDTHLFYDL 927


>gi|303313405|ref|XP_003066714.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106376|gb|EER24569.1| ATP-dependent RNA helicase DBP4, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 805

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 182/399 (45%), Gaps = 10/399 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  +P      + LS   +  LT +Q   +   ++ +D+L +A+TGSGKT+AF + + 
Sbjct: 48  ESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+ 
Sbjct: 108 ENLY--RKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQE 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +    +  H++ +VLDEAD ++D+GF+  ++ I++  PK+
Sbjct: 166 RLGRMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKE 225

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+ ++FSAT +  ++ LA+   +D   +++       +        V+  L ++ + + +
Sbjct: 226 RQTMLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWS 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRA 295
            +R       +VF S+   V    +        +  L     Q++ +           + 
Sbjct: 286 FIRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKY 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQR 354
               +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P   + 
Sbjct: 346 SCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEG 405

Query: 355 RAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +RL  ++  +  +   A   ++I  +      +DP  
Sbjct: 406 MLKRLEQKKIPIERINIKAKKQQSIVNQLQNMCFKDPAL 444


>gi|302665680|ref|XP_003024449.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
 gi|291188502|gb|EFE43838.1| hypothetical protein TRV_01412 [Trichophyton verrucosum HKI 0517]
          Length = 816

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/401 (24%), Positives = 185/401 (46%), Gaps = 13/401 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 49  IESFTDLPLSEPTRLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 109 LENLY--RKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +++ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 167 ERLGRMNILVCTPGRMLQHMDQTAAFDTGNIQMLVLDEADRIMDMGFQSTVDAIVEHLPK 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+  + +   S +    V+  L D+ + + 
Sbjct: 227 ERQTMLFSATQTKKVSDLARLSLQDPEYISVHQTASSATPSTLQQHYVVTPLPDKLDTLW 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R       IVF S+   V    +   +    +  L     Q++ +           +
Sbjct: 287 SFIRSSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P    
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERNGRAVLFLDPSEEI 406

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
               RL ++    +  E   ++ A +++  +  LQ+  F D
Sbjct: 407 GMLSRLEQK---KIPIEKI-NIRANKQQSIKHQLQNMCFKD 443


>gi|77408189|ref|ZP_00784934.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
 gi|77173204|gb|EAO76328.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae COH1]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/465 (23%), Positives = 197/465 (42%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I  AL E  +V  T VQ  ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKPYIQRALDELKFVAPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D          +  AP+RELA Q+ +  + +   +   + V         + + 
Sbjct: 62  KLDESSDDV------QVVITAPSRELATQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  S P
Sbjct: 116 EKLKVSQPHIVIGTPGRIYDLVKSGDLVIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++L+FSATI   +    K Y  + V   I +       ID   +     D++  I+ 
Sbjct: 176 KDVQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L+ +  +V  + G ++ +ER   +  +++     
Sbjct: 236 LSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             +++++  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGINFIP-------------KVIKNGEFQDTYDRDRRNNREKSYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R  +RA          
Sbjct: 400 LVKKKKKKIKPGYKKKIQWKVEEKRRKERRASNRAKGRAERKAKK 444


>gi|288904629|ref|YP_003429850.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           gallolyticus UCN34]
 gi|288731354|emb|CBI12905.1| putative ATP-dependent RNA helicase, DEAD/DEAH box family
           [Streptococcus gallolyticus UCN34]
          Length = 447

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 202/467 (43%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I EAL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           ++          +  AP+RELA Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  SNNV------QVVITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEKLQS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G++  +ER   +  ++       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --MGIKFVP-------------KMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----DEKRKRERRAANRAKGRAERKARKQTF 447


>gi|303313235|ref|XP_003066629.1| ATP-dependent RNA helicase ded1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240106291|gb|EER24484.1| ATP-dependent RNA helicase ded1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 593

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 28/378 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T VQ   +   +   D++  AQTGSGKT AF + +
Sbjct: 128 IKSFDDAGLHPVLLENVKLCGYEVPTPVQAYSIPAVMNGYDLIAVAQTGSGKTAAFLIPV 187

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + + A                  PL L +APTRELA Q+  E   L  ++ 
Sbjct: 188 LSKLMGKAKKLAAARPDLTNGFNESVDSVRAEPLVLIVAPTRELATQIFDEARRLCYRSM 247

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEML 161
           +   V  GG     +R DL  G  I++GTPGR+ D +     L++  +K  ++DEADEML
Sbjct: 248 LRPCVIYGGAPAREQRIDLHKGCDILIGTPGRILDFMGRNSLLSLHRVKYTIIDEADEML 307

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +   I+     +       M+  +           +    D VR+ I      H
Sbjct: 308 HSNWEREFTQIMSGGDVNEDADHCYMMFSATFNKECRQVARRFLSIDHVRIRIGRAGSSH 367

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + +      +  A+ +++        +VF + +         L  +     ++  
Sbjct: 368 LNVTQQVIYTEDDKKKKALYDLILSIPPSRTLVFVNNKQQADLLDDFLFNNGLPSTSIHS 427

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  R G   + +AT ++ARG+D+  +  VI+ +L S      +  +HR 
Sbjct: 428 DRTQREREDAIRAFRTGVCPIMVATGISARGLDIRHVMHVINFDLPSVEHGGIDEYIHRI 487

Query: 333 GRTGRAGRKGMSVFVIPQ 350
           GRT R G +G++      
Sbjct: 488 GRTARIGNEGLATSFYND 505


>gi|119191928|ref|XP_001246570.1| hypothetical protein CIMG_00341 [Coccidioides immitis RS]
          Length = 682

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 28/378 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T VQ   +   +   D++  AQTGSGKT AF + +
Sbjct: 217 IKSFDDAGLHPVLLENVKLCGYEVPTPVQAYSIPAVMNGYDLIAVAQTGSGKTAAFLIPV 276

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + + A                  PL L +APTRELA Q+  E   L  ++ 
Sbjct: 277 LSKLMGKAKKLAAARPDLTNGFNESVDSVRAEPLVLIVAPTRELATQIFDEARRLCYRSM 336

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEML 161
           +   V  GG     +R DL  G  I++GTPGR+ D +     L++  +K  ++DEADEML
Sbjct: 337 LRPCVIYGGAPAREQRIDLHKGCDILIGTPGRILDFMGRNSLLSLHRVKYTIIDEADEML 396

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +   I+     +       M+  +           +    D VR+ I      H
Sbjct: 397 HSNWEREFTQIMSGGDVNEDADHCYMMFSATFNKECRQVARRFLSIDHVRIRIGRAGSSH 456

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + +      +  A+ +++        +VF + +         L  +     ++  
Sbjct: 457 LNVTQQVIYTEDDKKKKALYDLILSIPPSRTLVFVNNKQQADLLDDFLFNNGLPSTSIHS 516

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  R G   + +AT ++ARG+D+  +  VI+ +L S      +  +HR 
Sbjct: 517 DRTQREREDAIRAFRTGVCPIMVATGISARGLDIRHVMHVINFDLPSVEHGGIDEYIHRI 576

Query: 333 GRTGRAGRKGMSVFVIPQ 350
           GRT R G +G++      
Sbjct: 577 GRTARIGNEGLATSFYND 594


>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
          Length = 722

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 233/489 (47%), Gaps = 29/489 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GYV  + +Q A +   L  KD++  A TGSGKT AF + +   LL +
Sbjct: 207 SLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYK 266

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV    + +    +G+   + +GG+++ ++ + L++ 
Sbjct: 267 PAKIA---STRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKSR 323

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR  DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P  R+ L
Sbjct: 324 PDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQNL 383

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I +L     K  VR+ I    +  + +    V +   D     +       
Sbjct: 384 LFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRK 443

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + + +  R   ++      V  L G L+Q++R +++   ++    V 
Sbjct: 444 LDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVL 503

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E+VI+ ++  + E  LHR GRT RAGR+G SV  + ++ Q R   
Sbjct: 504 ICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDR--S 561

Query: 359 LFREANVSVVWEPAPS--------VEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLA 409
           + R A  SV    + +        V+ ++  +  ++++     ++ I  +EK+  ++L A
Sbjct: 562 IVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRA 621

Query: 410 KHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           +    K             R  R    +  +     ++    R +  + + K        
Sbjct: 622 EMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKA 681

Query: 463 FKGSSW-FS 470
               +  + 
Sbjct: 682 DGNGARSYR 690


>gi|297833724|ref|XP_002884744.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330584|gb|EFH61003.1| hypothetical protein ARALYDRAFT_317764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 930

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/382 (27%), Positives = 179/382 (46%), Gaps = 35/382 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I + L +  YV    +Q   L   +  +D +  A TGSGKT+AF L +   +  +     
Sbjct: 348 ILDTLKKLNYVKPMPIQAQALPIIMSGRDCIGIANTGSGKTLAFVLPMLRHI-KDQPPIE 406

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+ L +APTREL  Q+  +++      GV      GG  V ++  +L+ G  IVV 
Sbjct: 407 AGDGPIGLVMAPTRELVQQIHSDIKRFAKALGVRCVAVYGGSGVAQQINELKRGTEIVVC 466

Query: 131 TPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+ D +     K  N+  +  +V+DEAD M D+GF   I  I+ +    R+ ++FSA
Sbjct: 467 TPGRMIDVLCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 526

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    + TLA+      V + +   +  + DI     +   S+R + ++ +L     K  
Sbjct: 527 TFPRQVETLARKVVDKPVEIQVGGRSVVNKDIIQLVEIRPESERFSRLLELLGEWYEKGK 586

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++                                 +  +L   ++    + IAT VAARG
Sbjct: 587 VLVFFR----------------------------SQEKSLSEFKNNVCNLLIATSVAARG 618

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ +LELV++ +  ++ E+ +HR GRTGRAGRKG +V  I ++  + A  L +   +S 
Sbjct: 619 LDVKELELVVNFDPPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELS- 677

Query: 368 VWEPAP-SVEAIRERDAQRILQ 388
             +P P  V+A+ +    ++ Q
Sbjct: 678 -EQPVPDDVKAVADGFMAKVKQ 698


>gi|313109282|ref|ZP_07795250.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
 gi|310881752|gb|EFQ40346.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa 39016]
          Length = 523

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 141 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 200

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 201 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 260

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 261 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 320

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 321 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 380

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 381 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 440

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 441 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 500

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 501 LLGRKITCEMPPA 513


>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
          Length = 786

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/463 (24%), Positives = 206/463 (44%), Gaps = 16/463 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     +  A+  +GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P +   AL ++PTR+LA+Q  +  + L   T V +++ +GG S+  +  +L
Sbjct: 89  L----KQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEEL 144

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD +  +GF + +  IL      R
Sbjct: 145 AQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNR 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   +D   V +  + +   D+      +   ++  A++ ++R
Sbjct: 205 QTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIR 264

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  ++F ST+  V     +  E   +     G++ Q  R   +   R  +  + 
Sbjct: 265 EQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVAARGID+P L+ V++ +    P+  +HR GR  RAGR G +   +          
Sbjct: 325 IVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLD 384

Query: 359 LFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L     +S     AP+ E + +       +I Q      ++ G   + V  L++    E 
Sbjct: 385 L--HLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQTVIDLVSDRVREL 442

Query: 416 I--AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +  +A    + +    A    +       R+  R      + G
Sbjct: 443 VDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREG 485


>gi|225457847|ref|XP_002279081.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 778

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/463 (24%), Positives = 206/463 (44%), Gaps = 16/463 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     +  A+  +GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 29  FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +  P +   AL ++PTR+LA+Q  +  + L   T V +++ +GG S+  +  +L
Sbjct: 89  L----KQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEEL 144

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD +  +GF + +  IL      R
Sbjct: 145 AQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNR 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   +D   V +  + +   D+      +   ++  A++ ++R
Sbjct: 205 QTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIR 264

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  ++F ST+  V     +  E   +     G++ Q  R   +   R  +  + 
Sbjct: 265 EQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVAARGID+P L+ V++ +    P+  +HR GR  RAGR G +   +          
Sbjct: 325 IVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLD 384

Query: 359 LFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L     +S     AP+ E + +       +I Q      ++ G   + V  L++    E 
Sbjct: 385 L--HLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQTVIDLVSDRVREL 442

Query: 416 I--AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +  +A    + +    A    +       R+  R      + G
Sbjct: 443 VDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREG 485


>gi|159036117|ref|YP_001535370.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157914952|gb|ABV96379.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 548

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/373 (32%), Positives = 192/373 (51%), Gaps = 6/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   Q   +AL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L  
Sbjct: 26  TFAELGARQETVDALAAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLE 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA  +       P AL + PTREL +QV ++L+   +  GV V    GGV+   +   
Sbjct: 86  QVLAPAEGGD--GTPQALVVVPTRELGIQVAKDLQAAGSTRGVRVLPIYGGVAYEPQIEA 143

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  I+VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P+ R
Sbjct: 144 LRSGVEILVGTPGRLLDLAKQKHLKLDRVRALVLDEADRMLDLGFLDDVERILAILPEDR 203

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I  L++ + +  V ++    +E          A      ++   +  I
Sbjct: 204 QTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARI 263

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ +  R    L    F V A+ G+L Q  R  AL+  R G+    
Sbjct: 264 LQARGRGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTL 323

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  V++ +   + +   HR GRTGRAG  G++V  +  +   R   
Sbjct: 324 VATDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRI 383

Query: 359 LFREANVSVVWEP 371
           + +   + +   P
Sbjct: 384 IDKTLGLDMPEPP 396


>gi|149197724|ref|ZP_01874774.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
 gi|149139294|gb|EDM27697.1| probable ATP-dependent RNA helicase [Lentisphaera araneosa
           HTCC2155]
          Length = 482

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 132/523 (25%), Positives = 215/523 (41%), Gaps = 69/523 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + I  A+   GY   T +Q   L   L+ +D LV A+TG+GKT AF +     L AE 
Sbjct: 12  LKKTILSAIYTAGYKKPTPIQNKSLKIILQGQDALVRAKTGTGKTAAFAIPALQHLRAE- 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P  L + P REL  Q+ +E   L           + G       +   +GA 
Sbjct: 71  -----VQHPQVLILTPGRELCKQISQEFIKLGKGLENFRVAEVTGGGKLSGVKKSLHGAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++  TPGRL D      LN + +  +V+DEAD + D+GFR+ +  IL   PK  + ++ S
Sbjct: 126 VISATPGRLIDIKEQGLLNSNCINMLVIDEADRLFDMGFREAVTSILKDLPKSVQTVLCS 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT +  I   +K   K  V +   S      +++  AV V   +       +L+ H    
Sbjct: 186 ATFTDDIKNFSKTLLKKPVIIEDRSNIGSEENLEEWAVSVYPENHLKLTEKLLKKHKNDQ 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVFC+ +  V    + L +  F V  L   + +  R+ AL++ RD + R+ +ATDVA+R
Sbjct: 246 VIVFCNHKERVDEVAEKLDDMGFDVHPLHSGMEKNVRNQALKLFRDKQVRILVATDVASR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+P L LV++ +L  +  + +HR+GRT RAG+ G+ +       ++  +         
Sbjct: 306 GIDIPGLPLVVNYDLPYDFPDYVHRAGRTARAGKSGLVISFYNGRKEKTIKSFEERTG-- 363

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                         R   R+  + +       DEK++    LAK   + +          
Sbjct: 364 --------------RQMLRVSFNQIM------DEKQVSQKPLAKKKQDSV---------- 393

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
                           +   RD SR    GG  +    G                  L  
Sbjct: 394 --------------RKKANIRDCSRIIVYGGKKQGLNNGL-----------------LKK 422

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +L ++ G++   IG I V    T + V  +    +  T++  K
Sbjct: 423 ILAKNCGLDDSDIGYIEVNEKHTLLGVLREKSSRVLTTLQKTK 465


>gi|302922639|ref|XP_003053509.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
 gi|256734450|gb|EEU47796.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
           77-13-4]
          Length = 1201

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 174/378 (46%), Gaps = 32/378 (8%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + +   GY   T +Q   L   +  +DV+  A+TGSGKTVAF L +   +  +      
Sbjct: 615 LDVIDNLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHI-KDQPPLKD 673

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELAVQ+ R+ +      G+      GG  +  +  +L+ GA I+V T
Sbjct: 674 TDGPIGLIMTPTRELAVQIHRDCKPFLKMMGLRSVCAYGGAPIREQIAELKRGAEIIVCT 733

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D     +G+  N+  +  VVLDEAD M D+GF   +  I  +    ++ ++FSAT
Sbjct: 734 PGRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDKQTILFSAT 793

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +   I +L K   K+ + V +   +    +I+    +     +   ++ +L     ++  
Sbjct: 794 MPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFLRVLELLGELYDRD-- 851

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
                                          Q +R + +   + G   + IAT VAARG+
Sbjct: 852 -------------------------EDARKDQVDRDSTISDFKKGVVPILIATSVAARGL 886

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G++V  +    +  A  + +    S  
Sbjct: 887 DVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQENCAPGIAKALEQSGQ 946

Query: 369 WEPAPSVEAIRERDAQRI 386
             P   +  +R+   +++
Sbjct: 947 PVP-ERLNEMRKAHREKV 963


>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
 gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
           C735 delta SOWgp]
          Length = 840

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 21/474 (4%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+N  + + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + + 
Sbjct: 319 STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPIL 378

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 379 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 435

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL++ PK
Sbjct: 436 VLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPK 495

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + S+      +              R   +
Sbjct: 496 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYL 555

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +         IVF   +    R   +      +   L G +SQ++R NA++  RDG+ 
Sbjct: 556 VLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKV 615

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 616 PFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 675

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +   +          +  V+ A+ +  A ++ +    ++ I  +EK+           +
Sbjct: 676 VKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKE----------EK 725

Query: 415 KIAAGFLRIHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           ++A   +++ R   L   E                + R  K    S  N   S 
Sbjct: 726 QLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAKKRALSELNGPDSV 779


>gi|157121045|ref|XP_001653747.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108882993|gb|EAT47218.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 814

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 191/381 (50%), Gaps = 28/381 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L + +  L 
Sbjct: 393 FPKEILDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQSLP 452

Query: 65  ENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           + DR   A   P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L+ 
Sbjct: 453 KIDRLETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRLRL 512

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 513 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 572

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 573 DTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPTER 632

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    ++  +++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 633 TEQIVHIMTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 692

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTGRA
Sbjct: 693 GQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRA 752

Query: 339 GRKGMSVFVIPQNMQRRAERL 359
           G+ G ++    ++       L
Sbjct: 753 GKTGCAISFCTKDDSHLFYDL 773


>gi|66911669|gb|AAH96848.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Danio rerio]
 gi|182889788|gb|AAI65637.1| Ddx18 protein [Danio rerio]
          Length = 653

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/426 (25%), Positives = 210/426 (49%), Gaps = 17/426 (3%)

Query: 3   IFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            F ++ +V+     + + E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF +  
Sbjct: 160 SFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPS 219

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +F P +    + ++PTRELA+Q    L+ L         + +GG +   E 
Sbjct: 220 IELIY--KLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEA 277

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L NG +I+V TPGRL DH++        +L+ +++DEAD +L++GF ++++ I+   P
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNA 234
           KKR+ ++FSAT +  +  LA+   K         +N+  + +   +   V+     R   
Sbjct: 338 KKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLL 397

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 398 LFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAD 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++    
Sbjct: 458 SGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEE 516

Query: 353 QRRAERLFREANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                R  ++A V +         +  I+ +   ++++   +L     +  K        
Sbjct: 517 LGFL-RFLKQAKVPLSEFEFSWTKISDIQSQ-LDKLIEKNYYLHKSAQEAYKSYVRAYDS 574

Query: 411 HDPEKI 416
           H  ++I
Sbjct: 575 HSLKQI 580


>gi|51010913|ref|NP_001003411.1| ATP-dependent RNA helicase DDX18 [Danio rerio]
 gi|49618963|gb|AAT68066.1| myc-regulated DEAD/H box 18 RNA helicase [Danio rerio]
          Length = 653

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/426 (25%), Positives = 210/426 (49%), Gaps = 17/426 (3%)

Query: 3   IFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            F ++ +V+     + + E G+  +T +Q   + P L  +DVL +A+TGSGKT+AF +  
Sbjct: 160 SFASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPS 219

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +     +F P +    + ++PTRELA+Q    L+ L         + +GG +   E 
Sbjct: 220 IELIY--KLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEA 277

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L NG +I+V TPGRL DH++        +L+ +++DEAD +L++GF ++++ I+   P
Sbjct: 278 QKLANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLP 337

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNA 234
           KKR+ ++FSAT +  +  LA+   K         +N+  + +   +   V+     R   
Sbjct: 338 KKRQSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLL 397

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       +  
Sbjct: 398 LFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNAD 457

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNM 352
           + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++    
Sbjct: 458 SGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGINGR-GHALLILRPEE 516

Query: 353 QRRAERLFREANVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                R  ++A V +         +  I+ +   ++++   +L     +  K        
Sbjct: 517 LGFL-RFLKQAKVPLSEFEFSWTKISDIQSQ-LDKLIEKNYYLHKSAQEAYKSYVRAYDS 574

Query: 411 HDPEKI 416
           H  ++I
Sbjct: 575 HSLKQI 580


>gi|170046083|ref|XP_001850610.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
 gi|167868981|gb|EDS32364.1| ATP-dependent RNA helicase DBP8 [Culex quinquefasciatus]
          Length = 516

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 141/500 (28%), Positives = 224/500 (44%), Gaps = 45/500 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L + G    T +Q+A +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LKPWITKQLEKLGLRRPTPIQQACIPRILDGQDCIGAAKTGSGKTFAFALPILQRLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 ++  AL + PT ELA Q+  +        GV V V  GG     E + LQ   H
Sbjct: 74  ------TSNFALILTPTHELAYQIAEQFSVAGQPMGVKVCVVTGGTDQLLEAQRLQARPH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL  H+ G        L+ +V+DEAD +L   F +D+E I    P+KR+ L F
Sbjct: 128 IVVAMPGRLAAHLTGCNTYSFRALQFLVVDEADRVLSGSFDEDLEAIKRFLPEKRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   +   +       A   +  SE      +D R +L A  DRD  ++  LR    
Sbjct: 188 SATLKEFMRESSVFPIAGGAFEWSEESEVATVETLDQRYILCADYDRDMVLIETLRKFKE 247

Query: 245 K----NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    N I+F +++      +  L +  F  V L G L Q+ER  AL   +    R+ IA
Sbjct: 248 EKEDANVIIFTNSKKDCQVLSLTLNKIGFDNVCLHGFLRQKERVAALNRFKSKHVRILIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVA+RG+D+P+++LV++  L   P   +HR GRT RAGRKG+++ +   P++++     
Sbjct: 308 TDVASRGLDIPNVQLVLNHRLPKVPNEYIHRVGRTARAGRKGLAISIFRFPRDLE-FLGE 366

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKMVDVLLAK 410
           +    N  +   P      + +R  +RI         +  + LD+   DE++        
Sbjct: 367 IEALINTKLTEHP------VDQRLVERIFMQVSVARREAEMNLDNKDFDERRHNYRRKKW 420

Query: 411 ----HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
                DP+++ A + R                 V  ++R R ++   K  G         
Sbjct: 421 LEQGLDPDEMDAKWKR-----------EQEQRKVERKERLRRENEMRKEHGERLGFVVKD 469

Query: 467 SWFSLSVGSKQKAEARWLMP 486
             F  +V   +K + R  + 
Sbjct: 470 DRFKDAV-ESKKFKKRKFVE 488


>gi|115454875|ref|NP_001051038.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|75320262|sp|Q53RK8|RH21_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 21
 gi|62733557|gb|AAX95674.1| DEAD/DEAH box helicase, putative [Oryza sativa Japonica Group]
 gi|108710689|gb|ABF98484.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710690|gb|ABF98485.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|108710691|gb|ABF98486.1| transposon protein, putative, CACTA, En/Spm sub-class, expressed
           [Oryza sativa Japonica Group]
 gi|113549509|dbj|BAF12952.1| Os03g0708600 [Oryza sativa Japonica Group]
 gi|125545447|gb|EAY91586.1| hypothetical protein OsI_13221 [Oryza sativa Indica Group]
 gi|125587655|gb|EAZ28319.1| hypothetical protein OsJ_12293 [Oryza sativa Japonica Group]
 gi|215697317|dbj|BAG91311.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 736

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 199/383 (51%), Gaps = 22/383 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +  A+ + GY   + +Q A +   L+++DV+  A+TGSGKT AF L + S +       
Sbjct: 325 ELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPIS 384

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G  +
Sbjct: 385 EENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEV 444

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-----------------E 170
           V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +                 +
Sbjct: 445 VIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENED 504

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
             LD+    R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++   S+
Sbjct: 505 EELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQNVIMTKESE 564

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           + + +  IL   G K AIVFC+T+ S     K L +  F+V  L G  SQ++R  +L   
Sbjct: 565 KMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDKAGFRVTTLHGGKSQEQRETSLDGF 624

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           R+ R  V +ATDVA RGID+PD+  VI+ E+ S+ +   HR GRTGRAG+KG++   +  
Sbjct: 625 RNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTYTHRIGRTGRAGKKGLATSFLTL 684

Query: 350 --QNMQRRAERLFREANVSVVWE 370
              ++    +++  ++N  V  E
Sbjct: 685 ENTDIFFDLKQMLIQSNSPVPPE 707


>gi|325118686|emb|CBZ54237.1| VASA RNA helicase, related [Neospora caninum Liverpool]
          Length = 769

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 191/435 (43%), Gaps = 66/435 (15%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  ++ + +S   Y   T +Q+  +   L  +D++  AQTGSGKT AF   + + +L + 
Sbjct: 242 IHPLLLQNVSRVNYTKPTPIQKNSIPTILSGRDLMACAQTGSGKTAAFLYPIIARMLQDG 301

Query: 67  DRFSPASA-------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
               P +A             P+ L ++PTRELA+Q+  E       TGV      GG  
Sbjct: 302 PPPLPQAAAGGGSGYRKPPAYPICLVLSPTRELAMQIYEEARKFQFGTGVRTVAVYGGSD 361

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH------------------------- 148
           V R+  DL  G  I V TPGRL D +  +  +                            
Sbjct: 362 VKRQLIDLDGGCDICVATPGRLVDLLERRKRSAGPGVSCKSGQKASPSPECSSEREVRLG 421

Query: 149 -LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR------------------------RML 183
            ++  VLDEAD MLD+GF   I+ I++S                             + +
Sbjct: 422 LVQFFVLDEADRMLDMGFLPQIKLIVESFDLPPSPSPQTAGYPSLGGDSGPGRRVGRQTV 481

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           MFSAT    I  LAK++ +D + + +      +  I  R        +   +V +LR   
Sbjct: 482 MFSATFPREIQMLAKDFLEDYIYLAVGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRETE 541

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F  T+         L +  F  +++ G+ +QQER  AL++ +  +  + +ATDV
Sbjct: 542 KGLTIIFVETKRKADMIEDYLVDDDFPAISIHGDRTQQEREEALRLFKAAKCPILVATDV 601

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLF 360
           AARG+D+ ++  VI+ +L +N ++ +HR GRTGRAG  G++   + ++ +   R    L 
Sbjct: 602 AARGLDISNVTHVINFDLPTNIDDYVHRIGRTGRAGNLGLATSFVNESNKPILRDLLNLL 661

Query: 361 REANVSVVWEPAPSV 375
            EA   +     P V
Sbjct: 662 EEAKQDIPSFLPPLV 676


>gi|242280284|ref|YP_002992413.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
 gi|242123178|gb|ACS80874.1| DEAD/DEAH box helicase domain protein [Desulfovibrio salexigens DSM
           2638]
          Length = 400

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 111/354 (31%), Positives = 177/354 (50%), Gaps = 4/354 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   +   GY   T VQ   +   L+ +DV+  AQTG+GKT AF L +   LL E     
Sbjct: 12  LISGIRSAGYEVPTPVQLKAIPAVLQGRDVMGLAQTGTGKTAAFVLPVLQRLLDEEA--E 69

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                  L ++PTRELA+Q       L  +TG+  A   GG  + ++ +++     ++  
Sbjct: 70  KRGPVKVLVLSPTRELALQTHETFIELGRQTGIRSAAVYGGAGIGKQAKEV-KKVTVINA 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGRL D +  + +++S +  ++LDEAD MLD+GF D++E +L   P +R+ LMFSAT+ 
Sbjct: 129 TPGRLLDLLEREEIDLSQVDTLILDEADRMLDMGFMDEVEKVLAKLPAERQNLMFSATMP 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            AI +L+KN   D   V +A          Y   +     + + +  +      +  +VF
Sbjct: 189 DAINSLSKNILHDPEVVRVAVTVSADGVSLYSCPVPVH-LKQSFLKVLFNEIEFERVLVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             T+    R  + LA+       L G+LSQ +R+  L   + G   V +ATD+AARGID 
Sbjct: 248 VRTKRWARRLAQRLAKGGLAAADLHGDLSQSKRNRTLNGFKFGDFTVLVATDLAARGIDC 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            ++  VI+ ++  N E  +HR+GRTGRA  KG +   +    + R   +     
Sbjct: 308 SNISHVINYDMPDNVEIFVHRTGRTGRADAKGTAYTFVADEDKARLAEIEESLG 361


>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 848

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 129/425 (30%), Positives = 211/425 (49%), Gaps = 13/425 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     + EA ++ G+ + T +Q   L      KDV+  A+TGSGKT AF L +  
Sbjct: 407 SFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQ 466

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    R        A+ +APTRELA Q+   +E L    G+     +GG+ + ++   
Sbjct: 467 ALLENPQR------LFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVA 520

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+V+ TPGRL DH+      ++   K +VLDEAD ML + F ++I  +L   P++
Sbjct: 521 LALKPHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRE 580

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           RR  +FSAT++  +  L +   K+  RV +A++      +  + + +    +D  +  +L
Sbjct: 581 RRTFLFSATMTSKVAKLQRASLKNPARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVL 640

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                ++ IVF ST  +  R   +L    FQ V L G++ Q +R  AL   + G+  V I
Sbjct: 641 NEFAGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLI 700

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+P ++LV++ E+ S+ ++ +HR GRT RAGR G S+  + Q      +R+
Sbjct: 701 ATDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRM 760

Query: 360 FREANVSVVWE--PAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                  +        +V  ++ER  +AQR+    +         K          D E 
Sbjct: 761 EALIGQKLPPYVCDEETVLVLQERVGEAQRMAAREMREADFNKKGKHRGGGGDGGEDAET 820

Query: 416 IAAGF 420
           +   F
Sbjct: 821 VVRSF 825


>gi|242008404|ref|XP_002424996.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212508625|gb|EEB12258.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 684

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 36/378 (9%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  I   ++I   +    Y   T VQ+  +   +  +D++  AQTGSGKT AF + +
Sbjct: 240 IESFSEIKMTEIISNNIMLARYDKPTPVQKYAIPIIMSRRDLMACAQTGSGKTAAFLVPI 299

Query: 59  ASTLLAENDRFSPASA-----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            + +     + +   +     P+ L +APTRELA Q+  E      ++ +   V  GG  
Sbjct: 300 LNQMYQRGPQNNRPYSHRKQYPMGLVLAPTRELATQIYDEARKFSYRSRLRPCVVYGGSY 359

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           +  + R+L+ G H++V TPGRL D +    + + + K +VLDEAD MLD+GF   I  I+
Sbjct: 360 LQDQFRELEKGCHLLVATPGRLADMLDRDKIGLENCKFLVLDEADRMLDMGFEPQIRRIV 419

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +    +          +     +  + +   +                          D 
Sbjct: 420 EKDMPRTGERQTLMFSATFPDVIQADKRSFLL--------------------------DL 453

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                 +       +VF  TR       + L    + V  + GE SQ+ER +AL+  R G
Sbjct: 454 LNATRYKNGTESLTLVFVETRKGADCLEEYLHYQGYPVSCIHGERSQREREDALRRFRSG 513

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ--- 350
              + +AT VAARG+D+  +  VI+ +L S+ E  +HR GRTGR G  G++     +   
Sbjct: 514 ETPILVATAVAARGLDISHVTHVINFDLPSDIEEYVHRIGRTGRMGNLGVATSFFNEKNR 573

Query: 351 NMQRRAERLFREANVSVV 368
           N+ R    L  E N  + 
Sbjct: 574 NIVRDLVELLTETNQDLP 591


>gi|87121888|ref|ZP_01077774.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86162917|gb|EAQ64196.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 433

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 7/382 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   I +A+ + G+   T +Q   +   +  +D+L SA TG+GKT++F     
Sbjct: 1   MSFSELELDPTIEQAIIQLGFKEPTEIQTQGIPVLMDGEDLLASAPTGTGKTLSFCAPAV 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L  ++  +  +AP AL +APTRELA Q+   ++ L   T +   + +GG     +++
Sbjct: 61  QHILDRDE--ASTNAPKALILAPTRELARQIFNLVKELLIHTRIQPQLIVGGTPYGMQQQ 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+V TPGRL +    + L++S +   V+DEAD MLD+GF D I  ++   PK+
Sbjct: 119 QLSEDCDILVATPGRLKELDDKQWLDLSDVSYFVIDEADRMLDMGFADTITALVKELPKE 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR----AVLVALSDRDNAI 235
           R+  M SAT+         +         I   +   +           +   + ++  +
Sbjct: 179 RQTAMLSATLDGDKLGQLADKIFKQTPEAIQINDSTRTIPSQIKQIAYRVDDDAHKEAIV 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L+  G + A++F S R  V  +   +         L G + Q +RS  ++ M+ GR 
Sbjct: 239 KHLLKQEGVQQALLFVSNRDHVDVWVNKIRALHIMCSGLHGVMKQGDRSEHMKQMQKGRL 298

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +V +ATDVAARGIDLP++  VI+  L    ++ +HR+GR  R G +G  + +I       
Sbjct: 299 QVLVATDVAARGIDLPEINTVINLRLPQKSDSYVHRAGRASRDGNEGTCISLIDSTDLAM 358

Query: 356 AERLFREANVSVVWEPAPSVEA 377
            E++ R     + +     +EA
Sbjct: 359 MEKIQRYMQSPIKFGRIEGLEA 380


>gi|327304765|ref|XP_003237074.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
 gi|326460072|gb|EGD85525.1| ATP-dependent RNA helicase DBP4 [Trichophyton rubrum CBS 118892]
          Length = 815

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 184/400 (46%), Gaps = 11/400 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 49  IESFTDLPLSEPTTLGLSASHFKELTDIQSRAIPHALQGRDILGAAKTGSGKTLAFLVPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 109 LENLF--RKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGKSLQEEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +++ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 167 ERLGRMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPK 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+ A+ +   S +    V+  L D+ + + 
Sbjct: 227 ERQTMLFSATQTKKVSDLARLSLQDPEYISVHQAASSATPSTLQQHYVVTPLPDKLDTLW 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + +R       IVF S+   V    +   +    +  L     Q++ +           +
Sbjct: 287 SFIRSSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARLDITHKFSASK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  +  + + 
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEV 406

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
                  +  + +      ++ A +++  +  LQ+  F D
Sbjct: 407 GMLSRLEQKKIPIEKI---NIRANKQQSIKHQLQNMCFKD 443


>gi|317140423|gb|ADV03672.1| vasa-like protein [Gadus morhua]
          Length = 354

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 8/338 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +++ GYV  T VQ+  +      +D++  AQTGSGKT AF L +   L+A+ 
Sbjct: 17  LCESLERNVAKSGYVKPTPVQKHGIPIIAAGRDIMACAQTGSGKTAAFLLPILQKLMADG 76

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                FS    P A+ +APTREL  Q+  E       T V   V  GG+S   + RDL  
Sbjct: 77  VAASSFSEQQEPEAIIVAPTRELINQIFLEARKFAHGTCVRPVVLYGGISTGHQIRDLLR 136

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-----ILDSSPK 178
           G +++ GTPGRL D I    + ++ L+ +V+DEAD MLD+GF  ++        + S  +
Sbjct: 137 GCNVLCGTPGRLMDMIGRGKVGLTKLRYLVMDEADRMLDMGFEPEMRRLVGSPGMPSKEE 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           ++ ++  +              +KD + + +       SD++ + V V    + + +++I
Sbjct: 197 RQTLMFSATYPEDIQRMAGDFLKKDYLFLAVGVVGGACSDVEQKLVQVTKFSKRDQLLDI 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G +  +VF  T+         L +      ++ G+  Q+ER  AL   R G+  V 
Sbjct: 257 LKNTGTERTMVFVETKRQADFIAAFLCQENVATTSIHGDREQREREQALGDFRSGKCPVL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           +AT VAARG+D+ D++ V++ +L +N ++ +HR GRTG
Sbjct: 317 VATSVAARGLDIKDVQHVVNFDLPNNIDDYVHRIGRTG 354


>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
 gi|91206590|sp|Q4I830|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 796

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 182/356 (51%), Gaps = 7/356 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + I   L+  G+   T +Q   +   L  KDV+  A+TGSGKT AF L +   LL  
Sbjct: 262 SLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAFILPILERLLYR 321

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +       + L   PTRELA+Q       L A T +   + +GG+S+  +  +L+   
Sbjct: 322 PKKIPTTRVVVLL---PTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLKAQELELKLRP 378

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R     ++  ++ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 379 DVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQTML 438

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +       RV + S+ +  + +              R   + ++ + 
Sbjct: 439 FSATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKRMGYLAHVCKN 498

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F   +    R   +          L G ++Q +R ++++  RDG+    +AT
Sbjct: 499 LYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRDGKVAYLLAT 558

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           D+A+RG+D+  ++ VI+ E   + +  +HR GRT RAGRKG+++ +  ++ ++  +
Sbjct: 559 DLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKVVK 614


>gi|320036344|gb|EFW18283.1| ATP-dependent RNA helicase dbp4 [Coccidioides posadasii str.
           Silveira]
          Length = 805

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 182/399 (45%), Gaps = 10/399 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  +P      + LS   +  LT +Q   +   ++ +D+L +A+TGSGKT+AF + + 
Sbjct: 48  ESFSELPLSDATLQGLSASHFKTLTDIQSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     +++      AL ++PTRELA+Q+   L  +         + IGG S+  E+ 
Sbjct: 108 ENLY--RKQWTEYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQE 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +    +  H++ +VLDEAD ++D+GF+  ++ I++  PK+
Sbjct: 166 RLGRMNILVCTPGRMLQHMDQTAAFDTDHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKE 225

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+ ++FSAT +  ++ LA+   +D   +++       +        V+  L ++ + + +
Sbjct: 226 RQTMLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWS 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRA 295
            +R       +VF S+   V    +        +  L     Q++ +           + 
Sbjct: 286 FIRNTLKSKILVFFSSSKQVRFVYEAFRHMQPGIPLLHLHGRQKQSARIDITSKFSRAKY 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQR 354
               +TDVAARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P   + 
Sbjct: 346 SCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFLDPSEEEG 405

Query: 355 RAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +RL  ++  +  +   A   ++I  +      +DP  
Sbjct: 406 MLKRLEQKKIPIERINIKAKKQQSIVNQLQNMCFKDPAL 444


>gi|171696192|ref|XP_001913020.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948338|emb|CAP60502.1| unnamed protein product [Podospora anserina S mat+]
          Length = 715

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 196/425 (46%), Gaps = 36/425 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E  N+P+ + + + + GY   + +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 280 MRSWEESNLPRRLLDIVHDVGYDEPSPIQRASIPIALQARDLIGVAVTGSGKTAAFLLPL 339

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +  L   +  +    P AL +APTREL  Q+  E        G  V   +GG S+  
Sbjct: 340 LVYISELPPLNDVNKNDGPYALILAPTRELVQQIENEARKFATPLGFTVVSIVGGHSLEE 399

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NGA I+V TPGRL D +  + L  +    +++DEAD M+D GF + +  ILD+ 
Sbjct: 400 QAYALRNGAEIIVATPGRLVDCLERRLLVFTQCCYIIMDEADRMIDQGFEEPLTKILDAL 459

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------- 216
           P            +P +       +    +  + +                         
Sbjct: 460 PVTNEKPDTEEAENPQLMKKYLGGKDRYRQTMMYTATMPPLVERIAKKYLRRPAIVTIGN 519

Query: 217 -----SDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                  ++ R   +A  D+    +  +          IVF + + +     K +    F
Sbjct: 520 AGEAVDTVEQRVEFIAGEDKRKNRLREILNSGQFKPPIIVFVNIKRNCEMVAKDIKSWGF 579

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
               L G  +Q++R  +L  +R+G++ + +ATD+A RGID+PD+ LV++  + S+ E+  
Sbjct: 580 STTTLHGSKTQEQREASLASVRNGQSSILVATDLAGRGIDVPDVSLVVNFNMPSSIESYT 639

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER--DAQ 384
           HR GRTGRAG+ G+++  +           +++  ++++S V +     EA + +    Q
Sbjct: 640 HRIGRTGRAGKSGVAITFLGNEDTEVMYDLKQIISKSSISKVPDELRRHEAAQSKPQRGQ 699

Query: 385 RILQD 389
           + ++D
Sbjct: 700 KKVED 704


>gi|264680431|ref|YP_003280341.1| hypothetical protein CtCNB1_4299 [Comamonas testosteroni CNB-2]
 gi|262210947|gb|ACY35045.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 469

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 133/401 (33%), Positives = 207/401 (51%), Gaps = 12/401 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +   L   N
Sbjct: 21  LSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDRL---N 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R+    A  AL + PTRELA QV  E+  L   +  + V    GGV    +   L+NGA
Sbjct: 78  PRW---FAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIASLENGA 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R+ L+F
Sbjct: 135 HIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPADRQTLLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I +LA  + +D   V +A+++           +     + + +  +L +   +
Sbjct: 195 SATYPDGIASLASRFMRDPQTVKVATQHSAGKIAQRWYEVGTRE-KVSTVAKLLAHFRPE 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           ++I FC+T+         L    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 254 SSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++  +      ++ +    
Sbjct: 314 RGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIEQLQGR 373

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           +  + P   V+ +       +L  P+    I G  K+ +  
Sbjct: 374 ASQFFP---VDELTPAAGGELL-PPMMTIQIIGGRKEKIRA 410



 Score = 47.3 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 6/118 (5%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E +A   + +   G     E     L     +F          GG            +
Sbjct: 347 DAEGLALNLVSMDEMGSVGKIE----QLQGRASQFFPVDELTPAAGGEL--LPPMMTIQI 400

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             G K+K  A  +M  +C   G +R+ IG I V    T+V V           +   K
Sbjct: 401 IGGRKEKIRAGDVMGAMCADFGYSREQIGKISVNDFSTYVAVDRKIASAACARLNAGK 458


>gi|109096395|ref|XP_001104093.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 2
           [Macaca mulatta]
          Length = 800

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 376 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 435

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 436 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 495

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 496 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 555

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 556 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 615

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 616 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 676 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 735

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 736 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 770


>gi|70663482|emb|CAJ15140.1| PL10a protein [Platynereis dumerilii]
          Length = 771

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 196/391 (50%), Gaps = 22/391 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST---- 61
            + +++   +    Y   T VQ+  +    +++D++  AQTGSGKT +F + + S     
Sbjct: 295 ELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLD 354

Query: 62  -----LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                +  +N+R +    P+AL +APTRELA Q+  E      ++ V   V  GG  +  
Sbjct: 355 GQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGA 414

Query: 117 ERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RD  + G H++V TPGRL D +    + + H++ VVLDEAD MLD+GF   I  I++ 
Sbjct: 415 QMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEK 474

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                       MFSAT    I  LA+++  + + + +        +I  + V V   D+
Sbjct: 475 DTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDK 534

Query: 232 DNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            + ++++L   G  +  +VF  T+         L    +    + G+ SQ+ER  AL+  
Sbjct: 535 RSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNF 594

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R G+  V +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++      
Sbjct: 595 RSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFND 654

Query: 349 -PQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             +N+ R    L  EA   V     P +E+I
Sbjct: 655 KNKNIVRDMVDLLIEAKQEVP----PWIESI 681


>gi|297796361|ref|XP_002866065.1| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297311900|gb|EFH42324.1| hypothetical protein ARALYDRAFT_495573 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 741

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/376 (27%), Positives = 175/376 (46%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P        L +  YV++T VQ A +   L  +D+L +A+TGSGKT+AF + +   
Sbjct: 73  FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R+SP      + I+PTRELA Q    L  +         + IGG       ++ 
Sbjct: 133 L--HRERWSPEDGVGCIIISPTRELAAQTFSVLNKVGKFHKFSAGLLIGGREGVDVEKER 190

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  +I+V  PGRL  H+        SHL+ ++LDEAD +LD  F+  ++ I+   PK R
Sbjct: 191 VNEMNILVCAPGRLLQHMDETPNFECSHLQILILDEADRVLDSAFKGQLDPIISQLPKHR 250

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNI 238
           + L+FSAT +  +  LA+   +D   +++  E    +        ++V +  + + + + 
Sbjct: 251 QTLLFSATQTKKVKDLARLSLRDPEYISVHEEAPTATPASLMQTVMIVPVEKKLDMLWSF 310

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-LQMMRDGRARV 297
           ++ H     +VF ST+  V    +   +    +   S      +     +      R  V
Sbjct: 311 IKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGVYSQFIERQSV 370

Query: 298 CIATDVAARGIDL-PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
              TDV ARG+D    ++ V+  +   +  + +HR GRT R   +G S+  +  + ++  
Sbjct: 371 LFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEKMI 430

Query: 357 ERLFREANVSVVWEPA 372
           E+L +EA V V    A
Sbjct: 431 EKL-QEAKVPVKLIKA 445


>gi|114644990|ref|XP_001159984.1| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 1 [Pan
           troglodytes]
          Length = 800

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 376 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 435

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 436 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 495

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 496 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 555

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 556 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 615

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 616 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 676 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 735

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 736 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 770


>gi|221056985|ref|XP_002259630.1| snrnp protein [Plasmodium knowlesi strain H]
 gi|193809702|emb|CAQ40404.1| snrnp protein, putative [Plasmodium knowlesi strain H]
          Length = 1001

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 165/380 (43%), Gaps = 25/380 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  
Sbjct: 581 SNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQ 640

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 641 LPPLTYETSQDGPYALIIAPSRELAIQIFDETNKFASYCSCRTVAVVGGRNAEEQAFELR 700

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I++GTPGR+ D +      ++    V+LDEAD M+D+GF D + FILD  P     
Sbjct: 701 KGVEIIIGTPGRIQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDSVHFILDKIPTSNLK 760

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----------------- 225
               A            ++   +    ++      +   R  L                 
Sbjct: 761 SEDEALALQEEMMAKAGHRLYRLTQMFSATMPPAVERLSRKYLRAPAYISIGDPGAGKRS 820

Query: 226 ------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                      +    +  +        IVF + +       K +++  F+ VAL G  +
Sbjct: 821 IEQKLEFITEGKKKQKLQEVLEVYEPPIIVFVNQKKVADIIAKSISKMKFRAVALHGGKA 880

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R   L   ++G   + +ATDVA RGID+  ++LVI+ ++  + E+  HR GRTGRAG
Sbjct: 881 QELREQTLNSFKNGDFDILVATDVAGRGIDVQGVKLVINFDMPKDIESYTHRIGRTGRAG 940

Query: 340 RKGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 941 MKGLAISFVTEQDSNLFYDL 960


>gi|193785886|dbj|BAG54673.1| unnamed protein product [Homo sapiens]
          Length = 800

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 376 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 435

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 436 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 495

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 496 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 555

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 556 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 615

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 616 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 675

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 676 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 735

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 736 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 770


>gi|308493749|ref|XP_003109064.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
 gi|308247621|gb|EFO91573.1| hypothetical protein CRE_11850 [Caenorhabditis remanei]
          Length = 519

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/395 (29%), Positives = 187/395 (47%), Gaps = 16/395 (4%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL- 62
           F N P ++ E + + G+   + +Q  +    L  KD +  +QTGSGKT+AF L     + 
Sbjct: 106 FGNNPAIMAE-IEKNGFEKPSPIQSQMWPILLCGKDCIGVSQTGSGKTLAFLLPAFLHID 164

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
             LA+ ++     +P  L ++PTRELA Q+  E++  Y+  G       GG S   + + 
Sbjct: 165 AQLAQYEKNEKKPSPFVLVLSPTRELAQQIEGEVQK-YSYNGYKSVCLYGGGSRSEQVQS 223

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            + G  IV+ TPGRL D      ++++ +  VVLDEAD MLD+GF   I  IL      R
Sbjct: 224 CKGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILFEIRPDR 283

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN-- 237
            + + SAT    +  L   Y K A+     S +      +      +   +R   +    
Sbjct: 284 LVALTSATWPEGVRNLTDRYTKQAIMAVNGSLDLTSCKSVTQHFEFIPHENRFERVCEIV 343

Query: 238 ---ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
                 +  +   I+F  ++      +            L G  SQ +R  +L+M+R G 
Sbjct: 344 NFLNNAHGNSYKMIIFVKSKVMADHLSSEFCMKGINSQGLHGGRSQSDRELSLKMLRTGE 403

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ +ATD+A+RGID+PD+  V++ +   + E  +HR GRTGRAGRKG S+  +  N + 
Sbjct: 404 VQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFMWWNDRS 463

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             + L     +S++ +    V    +RDA R  Q 
Sbjct: 464 NFDGL-----ISILEKSGQEVPEQLKRDAARYRQK 493


>gi|254496850|ref|ZP_05109700.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
 gi|254353922|gb|EET12607.1| ATP-dependent RNA helicase DbpA [Legionella drancourtii LLAP12]
          Length = 475

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 123/371 (33%), Positives = 197/371 (53%), Gaps = 9/371 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +   L+  GY  +T +Q   L   L+  DV+  A+TGSGKT AFGL L +
Sbjct: 19  SFSDLGLRDTLLTNLASLGYEKMTPIQVQSLPTLLKRIDVIAQAKTGSGKTAAFGLTLLN 78

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L  E        A  AL + PTRELA QV + +  L      V  +   GG+    +  
Sbjct: 79  HLKVE------FFATQALVLCPTRELAEQVSQAIRRLARLLPNVKVLNLSGGMPFTPQLD 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAHIVVGTPGR+  H+    L++ HL  +VLDEAD MLD+GF D+I+ I+ + P  
Sbjct: 133 SLRHGAHIVVGTPGRIQKHLDKNSLSLKHLNTLVLDEADRMLDMGFFDEIKNIIRTCPTT 192

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  LA  + +D  ++ I   + + +   +   +    D+   + ++L
Sbjct: 193 RQTLLFSATYPAEIKNLADEFMRDPQKITIEENHDELNIEQHFYEVNNAKDKFALLNDLL 252

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R+H   + ++FC+T+   ++ ++ L +  F    L+G++ Q +R  A+    +    + +
Sbjct: 253 RHHKPTSTLIFCNTKEQTNQVSRQLTQAGFSATMLNGDMEQIDRDLAMIRFGNKSCSILV 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  V++ EL+ +    +HR GRTGRAG KG+   +       R   +
Sbjct: 313 ATDVAARGLDIKELPAVVNYELAFDLAVHIHRIGRTGRAGHKGLVFNITTPADAERLCLI 372

Query: 360 FREANVSVVWE 370
             E    + WE
Sbjct: 373 EEELGRPITWE 383



 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +S G K K     ++  L + +G+   SI  I +    ++V +    VD    
Sbjct: 398 PEMVTLCISAGRKDKIRPGDILGALTKEAGLAGNSIEKIDITTLYSYVAIHKTQVDKAYE 457

Query: 524 TVKLDKGIQLKYL 536
             K  K    K L
Sbjct: 458 HFKHGKIKGRKVL 470


>gi|143456390|sp|Q0DBS1|RH51_ORYSJ RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 51
 gi|53792028|dbj|BAD54613.1| putative myc-regulated DEAD/H box 18 RNA helicase [Oryza sativa
           Japonica Group]
          Length = 590

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/528 (18%), Positives = 192/528 (36%), Gaps = 56/528 (10%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K+F ++P   +   A+ +  Y +LT +Q   + P +   DV+ SA+TGSGKT+AF +   
Sbjct: 86  KLFSDLPISDLTANAIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAI 145

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     RFSP +    + + PTRELA+Q     + L       +   IGG+ +  E  
Sbjct: 146 ELLC--RLRFSPRNGTGVIVLCPTRELAIQTHNVAKELMRYHSQTLGYVIGGIDLRGEAE 203

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G +++V TPGRL DH++            ++ +  + +     ++    +     +
Sbjct: 204 QLAKGINVLVATPGRLLDHMQKTKSFKYECLKCLIIDEADRILEQNFEEQMKQIFKLLPR 263

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           +       + +               +             D+ +       +    V   
Sbjct: 264 QGRQTVLFSATQTEKVEDFAKLTFGSKEERQRTLVYVGVDDHESKATVEGLKQGYCVIPS 323

Query: 240 RYHG-------------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
                                +VF S+  SV    ++L     +   + G+L Q +R++ 
Sbjct: 324 ERRFLVLYAFLKKALSEKTKVMVFFSSCNSVKFHAQLLNFIQIECYDIHGQLKQHQRTST 383

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSV 345
                     + + T+VAARG+D+PD++ ++  +     ++ +HR GRT R    KG ++
Sbjct: 384 FFKFHKAEHGILLCTNVAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGKGSAI 443

Query: 346 -FVIPQNMQRRAERLFREANVSVVW-----EPAPSVEAIRERD----AQRILQDPLFLDS 395
            F++P+ +Q       + AN+SV       E  P ++     D     ++I+     L+ 
Sbjct: 444 LFLLPKELQLLIH--LKAANISVSEYVFRQELVPKLQPYLHYDSSFEQEKIVGGNYILNR 501

Query: 396 IQGDEKKMVDVLLAKHDPEKIAA----GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
              +  K   +    H  + I A        +  +   +      + L S   + R    
Sbjct: 502 SAKEAYKSYLLAYKSHSMKDIFAIHQLDLTSVAASFCFSEPPKVNLDLESSASKHRKKRN 561

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSI 499
                              ++ G +             R    +R+  
Sbjct: 562 -------------------VNTGRRHGIGPSNPYG---RKGSDDRRQF 587


>gi|307331747|ref|ZP_07610851.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306882613|gb|EFN13695.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 1097

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/375 (32%), Positives = 185/375 (49%), Gaps = 11/375 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +P+   EAL   G ++   +QE  L   L   DV+  A+TG+GKT+ FGL L   +    
Sbjct: 44  LPET-AEALEAVGIMSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVVVSA 102

Query: 63  LAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             E  R  P     AP AL + PTREL  QV  +L        V V    GG +   +  
Sbjct: 103 DVEAGRAKPEQLTDAPQALVVVPTRELCQQVTNDLLTAGKVRAVRVLSIYGGRAYEPQVE 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D    K L +S +K++VLDEADEMLDLGF  D+E I+   P K
Sbjct: 163 ALKKGVDVVVGTPGRLLDLAGQKKLRLSSVKSLVLDEADEMLDLGFLPDVEKIIQLLPAK 222

Query: 180 RRMLMFSATISPAIT---TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           R+ ++FSAT+   +        +            E    ++I          D+   + 
Sbjct: 223 RQTMLFSATMPGQVISLARRYMSQPTHIRATAPDDEGATVANITQHVFRAHSMDKPEVVA 282

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+  G    ++FC T+ + +     LA   F   A+ G+L Q  R  AL+  R+G+  
Sbjct: 283 RVLQADGRGLVMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVD 342

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG  G+++ ++  +   R 
Sbjct: 343 VLVCTDVAARGIDVEGVTHVINYQSPEDEKTYLHRIGRTGRAGASGIAITLVDWDDIPRW 402

Query: 357 ERLFREANVSVVWEP 371
           + + +  +++     
Sbjct: 403 QLINKALDLAFHEPE 417


>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 428

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 113/382 (29%), Positives = 184/382 (48%), Gaps = 7/382 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +  +    
Sbjct: 18  PLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLD 77

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            R    +    L + PTRELA QV   ++         +      GGVSV+ + + L+ G
Sbjct: 78  RRSGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQSLRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+
Sbjct: 138 TDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL      D + V + S N        R   V    +   + ++++ H  
Sbjct: 198 FSATFPEQVQTLTHELLTDPIEVQLQSANASTL--VQRVFEVEKGRKTALLAHLIQQHEW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L +         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 256 RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I        + + ++  
Sbjct: 316 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNK 375

Query: 365 VSVVWEPAPSVEAIRERDAQRI 386
           + +  E     E   E  A+ I
Sbjct: 376 IRLEREQIEGFEVDAEAVAELI 397


>gi|171061032|ref|YP_001793381.1| DEAD/DEAH box helicase domain-containing protein [Leptothrix
           cholodnii SP-6]
 gi|170778477|gb|ACB36616.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
          Length = 417

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 132/384 (34%), Positives = 195/384 (50%), Gaps = 6/384 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P ++  A    G +  T +Q   +   LR  DVL +A+TGSGKT AF L L   L    
Sbjct: 9   LPALVSAA-QAHGLLRPTPIQAEAIPAILRGVDVLGAARTGSGKTAAFALPLLQRLQPCL 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
             +   +   AL + PTRELA+QVG  LE L +       + +  GGVS++ +   L+ G
Sbjct: 68  GEWRRRT--QALVLVPTRELALQVGEVLEDLSSHLVEPPRIVIAFGGVSINPQMMALRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML- 183
           A +VV TPGRL D +    L I  L  +VLDEAD +LDLGF D++  I    P +R    
Sbjct: 126 AEVVVATPGRLLDLLGHNALRIDTLNTLVLDEADRLLDLGFADELARIRAQLPPRRFQHL 185

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSAT    +  LA  +  + VR+ + ++  +  DI  RA+ V  + R   +  +L   G
Sbjct: 186 FFSATFPEEVQALADEWLHEPVRIELQADAAETPDITQRAIEVDATRRTPLLRKLLAEPG 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + A+VF +TR +       L     +  AL GELSQ  R+ AL   R    +V +ATDV
Sbjct: 246 WEQALVFVATRYATELLAHKLHRSGIKAAALHGELSQGARNAALAAFRQRELQVLVATDV 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  L +V++ +L  + ++  HR GRTGRAG  G +V  I  + +     + +  
Sbjct: 306 AARGIDIARLPVVVNFDLPRSTDDYTHRIGRTGRAGEVGQAVSFISADTEAHFRLIEKRQ 365

Query: 364 NVSVVWEPAPSVEAIRERDAQRIL 387
              V  E     E +    A++ +
Sbjct: 366 QQRVPREQIAGFEPVEVATAEQAV 389


>gi|29830989|ref|NP_825623.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29608103|dbj|BAC72158.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 510

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 191/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + L  +
Sbjct: 83  DMPERLLTALGAEGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLARLDGQ 142

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ GA
Sbjct: 143 R---AEPRQPLGLVLVPTRELAQQVTDALTPYARALRLRLTTVVGGLSIGRQASALRGGA 199

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 200 EVVVATPGRLKDLIDRDDCRLDRVAITVLDEADQMADMGFMPQVTALLDQVRPDGQRMLF 259

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 260 SATLDRNVDLLVRRYLHDPVVHSVDPSAGAVTTMEHHLLHVHDTDKHATTTE--IAARDG 317

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R TK L     +  AL G  SQ +R+  L   +DG   V +AT+VAA
Sbjct: 318 RVIMFLDTKHAVDRLTKNLLSVGVRASALHGGKSQSQRTRTLAQFKDGHVTVLVATNVAA 377

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL  +A +
Sbjct: 378 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRLMADAGI 437

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P    +R  +A+
Sbjct: 438 T------PQTTQVRSGEAE 450


>gi|254387115|ref|ZP_05002388.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
 gi|194345933|gb|EDX26899.1| DEAD-box RNA helicase [Streptomyces sp. Mg1]
          Length = 524

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 190/380 (50%), Gaps = 6/380 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 15  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 74

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R  P   PLAL + PTRELA QV   L        + +A  +GG+S++R+   L
Sbjct: 75  --TAGHRAQPKQ-PLALVLVPTRELAQQVTDALAPYATSVNLRIATVVGGMSINRQSGAL 131

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +L     + +
Sbjct: 132 RRGAEVLVATPGRLKDLIDRGDADLSQVAITVLDEADQMTDMGFMPQVTALLKQVRPEGQ 191

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       + +++  + V     D   V     
Sbjct: 192 TMLFSATLDKNIDKLVKMFLHDPVGHSVDPSAGAVTTMEHHVLYVMDET-DKKAVATRIA 250

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V R  K L     +   L G  SQ +R+  L   + G     +AT
Sbjct: 251 ARDGRVIMFVDTKRGVDRMVKKLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALVAT 310

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 311 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQRREMTRLMS 370

Query: 362 EANVSVVWEPAPSVEAIRER 381
           +A +S       S +    R
Sbjct: 371 DAGISPRTAQIKSSDEELSR 390


>gi|158316506|ref|YP_001509014.1| DEAD/DEAH box helicase domain-containing protein [Frankia sp.
           EAN1pec]
 gi|158111911|gb|ABW14108.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
          Length = 491

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 176/368 (47%), Gaps = 6/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  + + L+       T +Q A L   L  +DVL   +TGSGKT+AF L +
Sbjct: 1   MSSFTDLGVPARLTDVLTRLAIETPTPIQRATLPDALAGRDVLGRGRTGSGKTLAFLLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       + A AP AL +APTRELA Q+   L  L A  G+      GGV    + 
Sbjct: 61  VARL--SGGPRAQAGAPRALVLAPTRELAAQIDTALRPLAAAAGLTSCTVFGGVGQEPQV 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  IVV  PGRL D +     +++ +K VVLDEAD M DLGF   +  ++  +  
Sbjct: 119 AAIRRGVDIVVACPGRLEDLLAQGRCSLAQVKIVVLDEADHMADLGFLPAVRRLIGQTAA 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+  AI TL + Y          S       + +  + V    R   +V+ 
Sbjct: 179 GGQRMLFSATLDKAIDTLVRQYLSRPAVHEADSAQSPVGTMAHHLLHVERDSRLPVLVD- 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   A+VF  T+       + L     + V L G LSQ  R+  L     GRA   
Sbjct: 238 -LSSAPGRAVVFTRTKHGAKALARQLNRAGVRAVELHGNLSQNARTRNLDDFHTGRASAL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + ++ LVIHA+  ++ +  LHRSGRT RAG  G  + +      R   +
Sbjct: 297 VATDIAARGIHVDNVALVIHADPPADHKAYLHRSGRTARAGNSGTVITLATTEQIREVTQ 356

Query: 359 LFREANVS 366
           L R A + 
Sbjct: 357 LARAAGIR 364


>gi|154686775|ref|YP_001421936.1| YqfR [Bacillus amyloliquefaciens FZB42]
 gi|154352626|gb|ABS74705.1| YqfR [Bacillus amyloliquefaciens FZB42]
          Length = 438

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/359 (30%), Positives = 186/359 (51%), Gaps = 9/359 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+ L + + +   
Sbjct: 10  NLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKNESVIGQSQTGTGKTHAYLLPILNRIDPG 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +D         A+  APTRELA Q+ +E   +        +     IGG    +    L+
Sbjct: 70  SDTV------QAVITAPTRELANQIHQEALKITQGAEDEPIRTKCFIGGTDKQKSIDKLK 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              H+VVGTPGR+ D I+ + LN+   +++V+DEAD MLD+GF +D+++I    P++ +M
Sbjct: 124 TQPHLVVGTPGRIADLIKAQALNVYKAQSLVIDEADLMLDMGFLEDVDYIGSRMPEELQM 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y ++    ++  +      I++  V     D+D  +  ++ + 
Sbjct: 184 LVFSATIPEKLKPFLKKYMENPKYAHVEPKRITAEKIEHVLVPSKQRDKDKLLFEMMSHL 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +T+ +     K L E   +V  L G L+ +ER   ++ + D      IATD
Sbjct: 244 NPYLGIVFANTKNTADHIAKYLTEKGMRVGLLHGGLTPRERKKVMKQINDLEFTYVIATD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +   + +    RL +
Sbjct: 304 LAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQALTIYELSDEDALARLEK 362


>gi|306830625|ref|ZP_07463790.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304427133|gb|EFM30240.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 447

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 202/467 (43%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I EAL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           ++          +  AP+RELA Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  SNNV------QVVITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G++  +ER   +  ++       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --MGIKFVP-------------KMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----DEKRKRERRAANRAKGRAERKARKQTF 447


>gi|224825377|ref|ZP_03698482.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224602298|gb|EEG08476.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 460

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 198/371 (53%), Gaps = 10/371 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++P    + + L+  GY  +T +Q   L   L  +D++  A+TGSGKT AFGL L 
Sbjct: 4   TDFSSLPLSPSLVDNLASLGYTRMTPIQAQSLPVILNRQDLIAQAKTGSGKTAAFGLGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             +   N R+    A  AL + PTRELA QV +E+  L      + V    GG  +  + 
Sbjct: 64  DKI---NPRW---FAVQALVLCPTRELADQVAKEIRRLARSVDNIKVVTLCGGTPMGPQI 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAH+VVGTPGRL DH+    L++S ++ +VLDEAD M+D+GF ++I  I+ + P+
Sbjct: 118 GSLEHGAHVVVGTPGRLHDHLSRNTLDLSTVETLVLDEADRMVDMGFYEEIVGIVAACPR 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT    I   +  + K+ V V + S +      +     +    R   +  +
Sbjct: 178 KRQTLLFSATYPDTIRKQSARFLKNPVEVKVESLHDAGHI-EQHFYKIQPERRVATVAAL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +    + I FC+T+  V      L +  F  +AL GEL Q+ER   L    +    V 
Sbjct: 237 LGHFRPVSTIAFCNTKQQVRELANELQQQGFSALALYGELEQRERDEILVQFANRSCSVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  LE VI+ +LS +PE  +HR GRTGR G KG+++ ++  N  +R   
Sbjct: 297 VATDVAARGLDISTLEAVINVDLSHDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKRLAL 356

Query: 359 LFREANVSVVW 369
           +         W
Sbjct: 357 IEDYQQAKPNW 367



 Score = 62.3 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 12/140 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDD-SRAFKVGGGSRDN 462
           HDPE       R  R G       L  P +   ++L+    + + + +   ++       
Sbjct: 321 HDPEIHIHRIGRTGRGGEKGLALSLVGPNDSKRLALIEDYQQAKPNWADPAELTSSGSPL 380

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGV 518
                   ++ G K K     ++  L   +GI  Q +G I V    ++V     ++    
Sbjct: 381 VPPMVTLCIAAGRKDKVRPGDILGALTGEAGIAGQQVGKISVFEFSSYVALDRHIAQQAF 440

Query: 519 DLLRRTVKLDKGIQLKYLGG 538
             L       +  +++++G 
Sbjct: 441 SRLAEGRIKGRSFKMRFVGA 460


>gi|325928804|ref|ZP_08189971.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
 gi|325540777|gb|EGD12352.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
          Length = 571

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 123/456 (26%), Positives = 208/456 (45%), Gaps = 4/456 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                +  EP  S        A R+  +    D   GD    +     +    +      
Sbjct: 375 YIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAREQRAAEEQRRGG 434

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
               +G             +G D      R  +V G
Sbjct: 435 GRSGSGGSRSGSGGGRREGAGADGKPRPRRKPRVEG 470


>gi|322490766|emb|CBZ26030.1| putative DEAD box RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 658

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 164/370 (44%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  E  +  LT +Q   +   L+ +D+L  A+TG+GKT+AF + +   +   
Sbjct: 170 LNPHIVSALEQEFKFRELTPIQSRCIPAALQGRDLLAEAKTGAGKTLAFLIPIVEIVCRS 229

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
              F P++   A+ I PTREL +Q+   L  L       +                +   
Sbjct: 230 G--FRPSNGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSLTFLCCIGGQSRNQEGFKLAN 287

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +V      L         +  +L  + +DEAD +LD GF +D+  I+   PK R+ 
Sbjct: 288 GVMIVVASPGRLLDHLKLTTDWHTKNLLLLAVDEADRVLDNGFEEDMREIVALLPKNRQT 347

Query: 183 LMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT +  +     ++ +     + +    +      ++   V+ A   R   + + +
Sbjct: 348 FLFSATQTTRVEQLARISFHKTPIFISMKSKKDKATVDTLEQGYVVCASEQRLLVLYHFV 407

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  IVF S+R SVS   ++        +A  G+  Q +RS       +  + V  
Sbjct: 408 KKNLKKKVIVFFSSRNSVSFHCELFNYIDVPCIAFHGKQKQHQRSATYMQFCNAPSGVLF 467

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P+++ ++  +   +P   +HR GRT RAGR G ++  +    +   + L
Sbjct: 468 TTDVAARGLDIPEVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEELFLKYL 527

Query: 360 FREANVSVVW 369
           + +A V V  
Sbjct: 528 YDDAKVKVNE 537


>gi|119477463|ref|ZP_01617654.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
 gi|119449389|gb|EAW30628.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2143]
          Length = 457

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 189/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   +++ G+   + +Q   L   ++  D +  AQTG+GKT AF + + +  LA 
Sbjct: 81  SLDDRLMHGIADLGFEYCSPIQAGTLPQTMQGHDAIGKAQTGTGKTAAFLITIINDFLAN 140

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQN 123
             +    +  P AL IAPTREL VQ+G + + L   TG+ VA +  G     + ++  + 
Sbjct: 141 PIKEERYAGEPRALIIAPTRELVVQIGEDAKSLNKYTGLKVATLIGGMDYQKQLQQLSRE 200

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IVV TPGRL D      L +  ++ +V+DEAD MLD+GF   +  I+ S+P+K    
Sbjct: 201 LVDIVVATPGRLLDFQSRGDLYLDQIEILVIDEADRMLDMGFIPQVRRIVRSTPRKESRQ 260

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +P + +L + +  +   + I  ++     +D +  +VA   +   + NI++ 
Sbjct: 261 TLLFSATFTPEVLSLTEQWTFEPFSLEIEPDSVATDTVDQKVYIVAADQKFALLRNIVQL 320

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             AK+ IVF + R    +  + L +   +   LSGE+ Q +RS  LQ  +DG  +V +AT
Sbjct: 321 PDAKSIIVFANRRDQTRKLYERLRKAGIRCGILSGEIPQNKRSQTLQRFKDGDLQVLVAT 380

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +PE+ +HR GRTGRAG  G S+    ++       L  
Sbjct: 381 DVAGRGIHVDGVSHVINYTLPEDPEDYVHRIGRTGRAGATGTSISFACEDDSFLLAPLEE 440

Query: 362 EANVSVVWEPAPS 374
                +     P 
Sbjct: 441 LLGSKLSCTQPPE 453


>gi|269796056|ref|YP_003315511.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098241|gb|ACZ22677.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
          Length = 593

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 216/479 (45%), Gaps = 15/479 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
             I +AL++ G V    +Q   L   +   D++  A+TG+GKT+ FG+ L   ++A    
Sbjct: 23  PEIVQALADAGIVAPFPIQAMTLPVAMAGHDIIGQAKTGTGKTLGFGVPLLHRVVAPGEP 82

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D       P AL I PTRELAVQV ++LE    K  V +    GG +   + + L+ G
Sbjct: 83  GYDELPAPGKPQALVIVPTRELAVQVAKDLEAASTKRSVRIVQLYGGRAYEPQVKALEQG 142

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGR+ D ++   L+++  + VVLDEADEMLDLGF  D+E +L  +P  R  ++
Sbjct: 143 VEVVVGTPGRMIDLLKQGFLDLTRAQCVVLDEADEMLDLGFLPDVEKLLARTPAVRHTML 202

Query: 185 FSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT+     A+              +     +   +I          D+   +  IL+ 
Sbjct: 203 FSATMPGAVVAMARRYMKQPTHIRANDPDDGGQTVKNIKQVVYRAHALDKVEVLARILQS 262

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G   +IVF  T+ + ++    LA+  F   A+ G+L Q  R  AL+  R G+  V +AT
Sbjct: 263 EGRGLSIVFARTKRTAAKVADELADRGFASGAIHGDLGQGAREQALRAFRSGKIDVLVAT 322

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+ ++  V++ +   + +  LHR+GRTGRAG KG +V  +  +   R   + +
Sbjct: 323 DVAARGIDVDEVTHVVNYQCPEDEKTYLHRTGRTGRAGHKGTAVTFVDWDDLPRWSLINK 382

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
             ++ +  EP  +        +  +  D    +  +G          A  D E +     
Sbjct: 383 ALDLDIP-EPVETYST-----SPHLYTDLDIPEGTKG-RLPRSAQTRAGLDAE-VLEDLG 434

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
              + G   P +        G     D  R  + G  S    +G        G  Q   
Sbjct: 435 ETGKRGAARPAQSGGRDSGRGDAGRGDSRRDGRSGERSGGRGQGGQGSRGETGRGQGGR 493


>gi|34498308|ref|NP_902523.1| ATP-dependent RNA helicase DbpA [Chromobacterium violaceum ATCC
           12472]
 gi|34104162|gb|AAQ60521.1| ATP-dependent RNA helicase dbpA [Chromobacterium violaceum ATCC
           12472]
          Length = 460

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 8/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L   GY  +T++Q A L   L  +D++  A+TGSGKT AFGL L S++   N
Sbjct: 11  LPAPLLSNLDSLGYHQMTAIQAASLPAILEGRDLIAQAKTGSGKTAAFGLGLLSSI---N 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
            R+       AL + PTRELA QV +E+  L      + V    GG  +  +   L++GA
Sbjct: 68  PRW---FGVQALVMCPTRELADQVAQEIRRLARAIDNIKVVTLTGGTPMGPQIGSLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DH+  + LN++ +K +VLDEAD M+D+GF ++I  I+ + P+ R+ L+F
Sbjct: 125 HIVVGTPGRLQDHLFRETLNLTGVKTLVLDEADRMIDMGFIEEIVGIVRACPRTRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + K+ V V + S ++     +     V    R   +  ILR+    
Sbjct: 185 SATYPEDIRKASAQFLKNPVEVKVESLHKADHI-EQWFYKVKPETRLETVSRILRHLRPT 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+ FC+TR       + L E  F  + L G+L Q+ER   L    +  A V +ATDVAA
Sbjct: 244 SALAFCNTRERCKELVRELQEQGFHALTLHGDLEQRERDQILLRFANKSATVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ +L++VI+ +++ +PE  +HR GRTGR  + G+++ +   +  +R  ++      
Sbjct: 304 RGLDIKELDVVINVDVTHDPEVHIHRIGRTGRGEQHGLALTLATDSEAKRLVQIENYQQA 363

Query: 366 SVVWEPAPSV 375
            + W     +
Sbjct: 364 ELTWADVEEL 373



 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLL 521
                ++ G ++K     L+  L   +G     IG I +    +FV     ++ D +  L
Sbjct: 385 MVTLEIAGGKREKLRPGDLLGALTGEAGFAGSQIGKINIFEFNSFVALDRAIAEDALAKL 444

Query: 522 RRTVKLDKGIQLKYLG 537
            R     K  +++ +G
Sbjct: 445 SRGKIKGKQFKMRLVG 460


>gi|19552665|ref|NP_600667.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62390333|ref|YP_225735.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|145295583|ref|YP_001138404.1| hypothetical protein cgR_1510 [Corynebacterium glutamicum R]
 gi|21324218|dbj|BAB98843.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325670|emb|CAF21459.1| Superfamily II DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|140845503|dbj|BAF54502.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 448

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 210/483 (43%), Gaps = 43/483 (8%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P  I   L  +G      +QEA +   L  KDVL    TGSGKT  FGL +
Sbjct: 1   MTTFLELKLPDEIVRELRSQGITEAFPIQEAAIPDALAGKDVLGRGPTGSGKTFTFGLPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L       S    P  L + PTRELA QV   L+      G+ V   +GGV+++R  
Sbjct: 61  ITRLARSGA--SKPGRPRGLVLVPTRELAAQVRERLDDPARVMGLRVLEVVGGVNINRNI 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     I+V TPGR  D I  K L+++ +    LDEAD+M D+GF   ++ ++D +PK
Sbjct: 119 TALATPVDILVATPGRAQDLINQKKLSLADVSVTALDEADQMADMGFLPQVKKLMDLTPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   ++ L   Y  + +  + A        +++  +LV   D  N++V  
Sbjct: 179 NGQRLLFSATLDGDVSKLVDRYLHNPITHSTAPVQAAVDTMEHYRLLVGGRDPRNSVVLS 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K  I+F  T+  V R  K L       V + G+  Q  R+NAL    DG   V 
Sbjct: 239 IAAREGK-TIMFMRTKHGVDRQVKKLRRVGVNAVGIHGDKGQSTRTNALAGFADGSIPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+ D+ LV+H +  +  +  LHR+GRT RAG  G  V ++     +    
Sbjct: 298 VATDIAARGIDVDDVSLVVHVDPPAEHKAYLHRAGRTARAGTSGTVVTLVMDEQIKEVRE 357

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           LF++A V+                  ++ ++   L  I G  +           P  +A 
Sbjct: 358 LFQKAGVTAAEV--------------KVNENSPELAKITGARR-----------PSGVA- 391

Query: 419 GFLRIHRAGLCAPEEITPVSLVS---GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
                    L AP +  P         R   R  SR  +  G S     G S        
Sbjct: 392 ---------LPAPGQQQPKREQKNTHNRSDSRGSSRNPRRRGQSGSRSTGRSNPRRQTSR 442

Query: 476 KQK 478
           K  
Sbjct: 443 KDG 445


>gi|89100060|ref|ZP_01172930.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
 gi|89085294|gb|EAR64425.1| hypothetical protein B14911_17825 [Bacillus sp. NRRL B-14911]
          Length = 381

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 178/360 (49%), Gaps = 7/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I E   + G+   T+VQ   +      +DV+  + TG+GKT+A+ L L   +    
Sbjct: 11  LKPFIQEVWEKSGFNEPTAVQSKSIPFIQEGRDVIAESPTGTGKTLAYLLPLLDKIDP-- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  A  A+ +AP++EL +Q+  E++     +G+  A  IGG +  R+   L+    
Sbjct: 69  ----GKKAVQAVIVAPSQELVMQIFSEVQKWAEGSGIKGATFIGGANTKRQLEKLKKHPQ 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I +GTPGR+ + I+ K L +  +K VVLDE D++L     + ++ IL S+   R++  FS
Sbjct: 125 IALGTPGRMLELIKQKKLKMHEVKTVVLDEGDQLLVPEHLETVKTILKSTLADRQLAFFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  +   +A+    DA  + +  E    SD+D+        D+    +  +       
Sbjct: 185 ATLPESTAKVAQELSADAELIRVGKEEAIPSDVDHIYFACEQRDKIKL-LEKISRVKDIK 243

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            + F     +++  ++ L     +   L  +L + +R   L+  R+G++ +  ATDVAAR
Sbjct: 244 GLAFVKDIGNLAVLSEKLDFKGVKAGILHSDLDKMDRQKHLKNFREGKSSLLFATDVAAR 303

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  V+H +   + +  +HRSGRTGR G  G  + ++ +  +R  ++  +E  ++
Sbjct: 304 GLDIQGVTHVVHYDFPKDIKQYVHRSGRTGRFGASGTVISLVTEREERELKKFCQELGIT 363


>gi|296220525|ref|XP_002756346.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 3 [Callithrix
           jacchus]
          Length = 643

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|332686449|ref|YP_004456223.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
 gi|332370458|dbj|BAK21414.1| ATP-dependent RNA helicase YqfR [Melissococcus plutonius ATCC
           35311]
          Length = 449

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/402 (28%), Positives = 189/402 (47%), Gaps = 12/402 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       + EAL E+G+   T VQE ++    + K+V+  +QTGSGKT  F L L
Sbjct: 1   MSSFKQFQFKPFLMEALKEKGFQQPTQVQEKLIQMIQKGKNVIGQSQTGSGKTHTFLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVH 115
            + +    D          +   P+RELA Q+ +        +     +     G     
Sbjct: 61  LNKIDPTIDEV------QVIITTPSRELANQIYQAAIQAAKFSSPEIHISNFIGGTDKQR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +       +VVGTPGR+ D I  + L +    A V+DEAD  LD+GF +D++ I   
Sbjct: 115 QLIKLKNQQPQLVVGTPGRILDMINEQALKVHTAFAFVIDEADMTLDMGFLEDVDQIASR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  +ML+FSATI   +    K Y ++ V   I SE    S ID         D +  +
Sbjct: 175 LPKNLQMLVFSATIPEKLRPFLKKYLENPVIEEIKSETVIASTIDNWLFSTKGKDVNQLV 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       AI+F +T+  V   T  L EH  +V  + G++S +ER   ++ +++   
Sbjct: 235 YQLLTIGHPYLAIIFANTKQRVDEITTYLKEHGLRVAKIHGDISPRERKRVMRQVQNLEY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+ E+  + +  +HR GRTGR G KG ++ +     +++
Sbjct: 295 QYVVATDLAARGIDIEGVSEVINTEIPKDLDFFIHRVGRTGRNGLKGTAITLYSPADEQQ 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
              + +   ++   +   + E I   D  R L+     D + 
Sbjct: 355 ITEIEK-LGITFQPKEIKNGEIIATYDRNRRLKREKTQDELD 395


>gi|325977606|ref|YP_004287322.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177534|emb|CBZ47578.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 447

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 201/467 (43%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I EAL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           ++          +  AP+RELA Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  SNNV------QVVITAPSRELATQIYQATKQIAEKSETEIRVANYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQIKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYKPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --LGIKFVP-------------KMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----DEKRKRERRAANRAKGRAERKARKQTF 447


>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
 gi|307767911|gb|EFO27145.1| Ddx49-A-prov protein [Loa loa]
          Length = 478

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 127/442 (28%), Positives = 219/442 (49%), Gaps = 25/442 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +   + +   +        T VQ   +   L   DVL  A+TG+GKT+AFGL + 
Sbjct: 43  TTFSELGLSKWLCNQVRHLAMNTPTPVQVNCIPHILAGSDVLGCAKTGTGKTLAFGLPIL 102

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA+Q+G +   L    G+ + + +GG     +  
Sbjct: 103 HELAIDP------YGICALVLTPTRELAIQIGDQFAALGTPIGLKIGIVVGGKDRVAQGN 156

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           DL    HIVV TPGRL DH+     N       L+ +VLDEAD +LD  +  +++ IL+ 
Sbjct: 157 DLARRPHIVVATPGRLADHLESDSENTGKLFKKLRFLVLDEADRLLDGQYSIELKTILNF 216

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK+R+ L+FSATI+ A++ L +   K        SE      ++ + VL   + +D  +
Sbjct: 217 LPKQRQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIATVDKLEQKYVLCPCAVKDAYL 276

Query: 236 VNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V +++    K+     ++F  T         +     FQV +L  ++SQQER+++L   R
Sbjct: 277 VYVVKNFHEKHPDSLILIFSHTCRECQALAIMFHGLGFQVGSLHSQISQQERTSSLTKFR 336

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GR ++ I TDVA+RG+D+P ++LVI+  +  NP+  +HR GR+ RAGR G ++  + Q 
Sbjct: 337 SGRIKILICTDVASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQY 396

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMV---- 404
                + + +     +      + + + +   Q ++   +  + LD     E+K++    
Sbjct: 397 DIFLVQEIEKVIGKKLDKLIV-NDKKVTQYVTQVLVTKREAEIKLDQQNFGERKIINKRK 455

Query: 405 DVLLAKHDPEKIAAGFLRIHRA 426
           ++L+A  DP+++    L++ R 
Sbjct: 456 EMLIAGLDPDEV-EKTLKMQRE 476


>gi|19115564|ref|NP_594652.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74625979|sp|Q9UTP9|DBP4_SCHPO RecName: Full=ATP-dependent RNA helicase dbp4
 gi|6318264|emb|CAB60250.1| ATP-dependent RNA helicase Hca4 (predicted) [Schizosaccharomyces
           pombe]
          Length = 735

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 173/366 (47%), Gaps = 8/366 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q    AL    ++ LT +Q+  +   L+ +D+L +A+TGSGKT+AF + L   
Sbjct: 41  FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++      AL I+PTRELA+Q    L  +         + IGG +   E+  L
Sbjct: 101 LY--RKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +    + S L+ ++LDEAD +LD+GFR  ++ I+ S P  R+
Sbjct: 159 SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQ 218

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNIL 239
            ++FSAT + ++  LA+   ++   +++   +     S+++   + V L+++ + +   +
Sbjct: 219 TMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFI 278

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R H     IVF S+   V    +        +  L     Q++ +           R  V
Sbjct: 279 RTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVV 338

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
              TD+ ARG+D P ++ VI  +   + +  +HR GRT R  R G ++ ++  + +   +
Sbjct: 339 LFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLK 398

Query: 358 RLFREA 363
           RL  + 
Sbjct: 399 RLESKK 404


>gi|332218198|ref|XP_003258246.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Nomascus
           leucogenys]
          Length = 643

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|194374303|dbj|BAG57047.1| unnamed protein product [Homo sapiens]
          Length = 643

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|121704948|ref|XP_001270737.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119398883|gb|EAW09311.1| DEAD/DEAH box RNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 584

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/447 (24%), Positives = 191/447 (42%), Gaps = 35/447 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +   + E +   GY   T +Q   +   L   D++  AQTGSGKT AF +  
Sbjct: 128 VRNFDDAGLHPFMRENIRLCGYEIPTPIQAYSIPAVLTGHDLIAIAQTGSGKTAAFLIPA 187

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 188 LSQLMGKAKKLAAPRPNLANGFNPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 247

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++GTPGRL D +    + ++S +K  ++DEADE+L
Sbjct: 248 LRPCVVYGGAPSREQREELQKGCDILIGTPGRLLDFMDKPHVLSLSRVKYTIIDEADELL 307

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  D   I+     +     R M+  +           K   +D VR+ I      H
Sbjct: 308 LSDWESDFTKIMSVEDVNEDADHRYMMFSATFNKDCRRLARKFLAEDHVRIRIGRPGSTH 367

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++D   +      +   + ++L        ++F +T+         L        ++  
Sbjct: 368 VNVDQNIIFAEDHLKKQCLYDLLLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHS 427

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  R  R  + +AT V+ARG+D+ ++  VI+ +L S         +HR 
Sbjct: 428 DRTQREREDALRAFRTARCPILVATGVSARGLDIKNVMHVINFDLPSVMHGGITEYIHRI 487

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           GRT R G +G++           A  L     V ++ E A  +    E  + +   D + 
Sbjct: 488 GRTARIGNEGLATSFYNDRNAELAPDL-----VKILIESAQKIPDFLE--SYKPADDVVK 540

Query: 393 LDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            D    DE    + +   +D   + AG
Sbjct: 541 FDDDTDDEGAENETVNDNNDTGTVWAG 567


>gi|126343381|ref|XP_001380653.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Monodelphis domestica]
          Length = 744

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 185/405 (45%), Gaps = 18/405 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  +   + L  RG   L  +Q    +P    KD++  A+TG+GKT +F + L   
Sbjct: 144 FSRFPISEETIKLLKARGVTYLFPIQVKAFSPVYEGKDLIAQARTGTGKTFSFAIPLIEK 203

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + +      +P  L +APTRELA QV ++ + +  K    VA   GG     +   +
Sbjct: 204 LQRDQEELKKTRSPKVLVLAPTRELANQVAKDFQDITRKLS--VACFYGGTPYQGQINHI 261

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLD+GF D +E I+  S K   
Sbjct: 262 RRGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDMGFADQVEDIIHGSYKTGS 321

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A                   E      +                 +    
Sbjct: 322 EDNPQTLLFSATCPQWVYKVAKKYMKTKYEEIDLVGKMTQKTATTVEHLAIQCHWSQRAA 381

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 382 VIGDVIQVYSGNDGRAIIFCETKKNVAEMALNPHIKQNAQ-CLHGDIAQSQREITLKGFR 440

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +     N
Sbjct: 441 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPN 500

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFL 393
            + + + +  +A ++      P+   +   R  DA R L    F+
Sbjct: 501 ERGQLKYVEGKAGITFKRVGVPTTMDLVKSRSMDAIRSLASVSFV 545


>gi|321261169|ref|XP_003195304.1| hypothetical protein CGB_G4440W [Cryptococcus gattii WM276]
 gi|317461777|gb|ADV23517.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 615

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/381 (28%), Positives = 176/381 (46%), Gaps = 18/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    IP+ I   L  +G    T +Q   L      +D++  A TGSGKT+AF L    
Sbjct: 185 MK----IPKPILSYLQAKGIKRPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFVLPAIM 240

Query: 61  TLLAENDR--FSPASAPLALAIAPTRE-------LAVQVGRELEWLYAKTGVVVAVCIGG 111
             L    R  F     P+ L I P+RE         V V   L+       +   +CIGG
Sbjct: 241 AALEMEARVPFVRGEGPVGLIICPSRELARQTYEQCVAVCAVLKESGNYPELRSLLCIGG 300

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +S+  +   L  G H+VV TPGRL D +  + LN  + K + +DEAD M+D+GF +D+  
Sbjct: 301 ISMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRS 360

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+     +R+ L+FSAT+   I   A+    + + VN+      + D+      V    +
Sbjct: 361 IMSHFKYQRQTLLFSATMPRKIQDFAQQSLINPILVNVGRAGAANMDVIQEVEYVKQEAK 420

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       I+F   +  V    + L     + VA+ G  +Q+ER  A++  +
Sbjct: 421 MVYLLECLQKTPPP-VIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQEEREYAIRSFK 479

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +A+ VA++G+D  +++ VI   +    E+ +H  GRTGR+G+ G++   +  N
Sbjct: 480 TGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTFVNMN 539

Query: 352 MQR----RAERLFREANVSVV 368
                    + L  EA   + 
Sbjct: 540 TSEQTLLDLKYLLMEAKQKIP 560


>gi|308504808|ref|XP_003114587.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
 gi|308258769|gb|EFP02722.1| hypothetical protein CRE_28204 [Caenorhabditis remanei]
          Length = 631

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 119/390 (30%), Positives = 188/390 (48%), Gaps = 26/390 (6%)

Query: 5   ENIPQVIGEALS-------------ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
           ENIP  IG  L              E+G V  T++Q   +   L  +D++  A TGSGKT
Sbjct: 183 ENIPPPIGSFLEMKFPKTLLEFMQNEKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKT 242

Query: 52  VAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVG------RELEWLYAKTGV 103
           + F L L    L +  +  F     P  L I P+RELA Q+        +         +
Sbjct: 243 MTFVLPLVMFCLEQELKLPFMRNEGPFGLIIVPSRELARQIYDLVIEMFDAINKAGLPEM 302

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              +CIGGV +  + +D +NG HIVV TPGRL D +  K +N+   + +VLDEAD MLD+
Sbjct: 303 RAGLCIGGVPIGEQAKDFRNGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDM 362

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF D+I+ I      +R+ L+FSAT+   I   AK+     + VN+        ++    
Sbjct: 363 GFEDEIKSIFYFFKAQRQTLLFSATMPKKIQFFAKSALVQPIVVNVGRAGAASLNVLQEL 422

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V   ++   ++  L+    K  ++F   +  V    + L     +V ++ G   Q +R
Sbjct: 423 EFVRSENKLVRVLECLQKTSPK-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDR 481

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              ++  R     V +ATDVA++G+D   +E VI+ ++  + EN +HR GRTGR+GRKG+
Sbjct: 482 HAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGL 541

Query: 344 SVFVIPQNMQR----RAERLFREANVSVVW 369
           +   I +  +       ++L  EA   +  
Sbjct: 542 ATTFINKKSEMSVLSDLKQLLVEAGQELPE 571


>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
 gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
          Length = 510

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 176/382 (46%), Gaps = 11/382 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +   +  +GY   T +Q   +   L   DV+  A+TGSGKT AF L +   
Sbjct: 27  FESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLEK 86

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L        P S   AL ++PTR+LA+Q  +  + L   T + +++ +GG  +  +  DL
Sbjct: 87  LKQHL----PQSGVRALILSPTRDLALQTLKFTKELGRFTDLRISLLVGGDRMESQFEDL 142

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD +  +GF + +  IL    + R
Sbjct: 143 SQNPDIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSLFGMGFAEQLHKILTQLSENR 202

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNI 238
           + L+FSAT+  A+   AK   +D   V +  + +   D+      +   ++      +  
Sbjct: 203 QTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFFTLRQEEKYAALIYLIR 262

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  ++F ST+  V     +  E   +     G++ Q  R   +   R  +  + 
Sbjct: 263 DHISTDQQTLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQDARKIHVSRFRARKTMLL 322

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVAARGID+P L+ VI+ +    P+  +HR GR  RAGR G +   +          
Sbjct: 323 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAFSFVTSEDMPYLLD 382

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           L     +S   + AP+ E + +
Sbjct: 383 L--HLFLSKPVKAAPTEEEVLQ 402


>gi|15672392|ref|NP_266566.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723284|gb|AAK04508.1|AE006277_8 ATP-dependent RNA helicase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405986|gb|ADZ63057.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 446

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 207/467 (44%), Gaps = 27/467 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N    I + L    +   T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRE 117
             +  + D         A+  AP+RELA Q+ +  +        +       G     + 
Sbjct: 61  QKIDTDLDEV------QAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++   +  H+V+GTPGR+ D I+   L +      V+DEAD  LD+GF  D++ I  S  
Sbjct: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y  + V   IA++      I+   V    S  +  ++ 
Sbjct: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+  V      L  +  +V  + G++  +ER   +  +++   + 
Sbjct: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  +I+ E+  +    +HR GR+GR G +G ++ +   +      
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +   + V ++P             + ++D   +DS   D ++       +   + I 
Sbjct: 355 EIEK---MGVTFQP-------------KAIKDGEIVDSYDRDRREKRTKKQDEISTKTIG 398

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           A  L+  +  +    +      +   ++ +  +   K    +RD+ K
Sbjct: 399 A--LKKGKKHVKPGYKRAIKWQIEEDNKKKRRAERNKNARKTRDSRK 443


>gi|71027833|ref|XP_763560.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350513|gb|EAN31277.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 894

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 173/369 (46%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I + L +R Y     +Q   +   +  +DV+  A+TGSGKT+AF L     +L + 
Sbjct: 424 LPDPILKILEKREYEKPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPGIRHVL-DQ 482

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                +   + L IAPTREL +Q+  E        G+      GG  +  +   L+ GA 
Sbjct: 483 PPLRESDGMIVLIIAPTRELVIQISNECAKFSKSVGLRTLAVYGGAGIGEQLNALKRGAE 542

Query: 127 IVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IVVGTP     +    +GK  N+  +  +VLDEAD M D+GF   I  I+ +    R+  
Sbjct: 543 IVVGTPGRLIDVLTLSKGKVTNLRRVTYLVLDEADRMFDMGFAPQISAIVGNIRPDRQTA 602

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  LAK      +++ +    +  S +D   V++    +   ++ +L    
Sbjct: 603 LFSATFPLMIENLAKKILVKPLQIVVGQRGKSASQVDQHVVVLNDDKKLLKLLKLLGEWH 662

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              N I+F +T+         L  + ++   L G + Q +R   L   R+G+  + IAT 
Sbjct: 663 EHGNIIIFVNTQLESEHLFNDLLAYGYEAGILHGGVDQTDREFTLNDFREGKKTILIATS 722

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  + LVI+     + E+ +HR GRTGRAG  G S   +      ++  + + 
Sbjct: 723 IAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPEEAAKSHDIIKA 782

Query: 363 ANVSVVWEP 371
             ++    P
Sbjct: 783 LRLASQEVP 791


>gi|320170440|gb|EFW47339.1| DEAD box RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 662

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 181/379 (47%), Gaps = 19/379 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +  A +  G+ + T +Q       L  KD++  A+TGSGKT+AF L     L  + 
Sbjct: 244 FPEDLLTACA--GFASPTPIQSQCWPISLAGKDLIGIAKTGSGKTLAFALPSIIHLRDQE 301

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-------VVAVCIGGVSVHRE 117
              + S    P+ L + PTRELA+Q       + + TG              GGV   ++
Sbjct: 302 ALGKSSNQRGPVVLVLCPTRELAMQTAEVYANVASHTGKSSSSVALKTVCIFGGVPKKQQ 361

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G H++V TPGRL D I    +++  +  V+LDEAD MLDLGF  DI  IL    
Sbjct: 362 LDQLKSGIHVIVATPGRLRDFIDSGDISLQRVSCVILDEADRMLDLGFEKDIRDILGRVT 421

Query: 178 KKRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           K R+ LMFSAT   AI  + + +             E   +  +     ++    +D  +
Sbjct: 422 KDRQTLMFSATWPSAIEAIGREFLAPDTVRVTIGGDELVANDAVTQHVEVLEPFAKDARL 481

Query: 236 V---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           +              I+F   +    R  ++L    ++ +A+ G+ SQ +R+ ALQ  + 
Sbjct: 482 LDLLQKHHSSRKNKVIIFVLYKQEAPRVEQMLLRKGWKSIAIHGDRSQADRTAALQAFKT 541

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + IATDVAARG+D+P++E VI+       E+ +HR GRTGRAG+ G +      N 
Sbjct: 542 GEVPLLIATDVAARGLDIPNVEYVINYTFPLTIEDYVHRIGRTGRAGKTGTAFTFFTVND 601

Query: 353 QRRAERL---FREANVSVV 368
           +  +  L    RE N +V 
Sbjct: 602 KSHSGELVNVLRETNQAVP 620


>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
 gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
          Length = 836

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 136/563 (24%), Positives = 240/563 (42%), Gaps = 48/563 (8%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+N  + + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + + 
Sbjct: 312 STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPIL 371

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +     + + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 372 ERLLYRPRKVPTSR---VVILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 428

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 429 VLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 488

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + ++ +    +    V +       R   +
Sbjct: 489 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREGKRMGYL 548

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V + +       IVF   +    R   V      +   L G +SQ++R +A++  RDG+ 
Sbjct: 549 VLLCQTVYTNRVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRDGKV 608

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 609 PFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK- 667

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHD 412
                      +V     +  A   +   RI+   +  +    ++  + ++ D+L  +  
Sbjct: 668 -----------IVKAAVKAGRAQGAKIVSRIVDPNVADEWAIKVEEMQSEIEDILKEEKA 716

Query: 413 PEKIAAGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
            + +A   +++ R   L   E+               + +  K    S  N  GS     
Sbjct: 717 EKHLAQAEMQVTRGHNLIKHEDEIMSRPKRTWFETEREKKEAKNRALSELNGPGSVL--- 773

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
                 K E R L       SG  ++ +   R++ +              ++  +   G+
Sbjct: 774 ------KKEKRKL-------SGKEKKKLDDTRLREE-------GKVWKKGKKERESKGGL 813

Query: 532 QLKYLGGEKPDFRGYKSSGFKSK 554
           Q +  G  K      K +G  SK
Sbjct: 814 QGQSKGKAKKHKTRGKPAGRASK 836


>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
 gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
          Length = 428

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 182/380 (47%), Gaps = 7/380 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +  +    
Sbjct: 18  PLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLD 77

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            R    +    L + PTRELA QV   ++         +      GGVSV+ + + L+ G
Sbjct: 78  RRAGKGNFVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+
Sbjct: 138 TDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL      D + V + S N        R   V    +   + ++++ H  
Sbjct: 198 FSATFPEQVKTLTHELLNDPIEVQLQSANASTL--VQRVFEVEKGRKTALLAHLIQQHEW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L +         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 256 RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I          + ++  
Sbjct: 316 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNK 375

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           + +  E     E   E  A+
Sbjct: 376 IRLEREQIEGFEVDEEATAE 395


>gi|119715705|ref|YP_922670.1| DEAD/DEAH box helicase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536366|gb|ABL80983.1| DEAD/DEAH box helicase domain protein [Nocardioides sp. JS614]
          Length = 479

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 189/368 (51%), Gaps = 6/368 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I +AL     V   ++QE  L+  L   D++  A+TG+GKT+AFG+ +    +A  
Sbjct: 2   LPE-ICDALERVNIVTPFAIQEMTLSVALMGTDLIGQARTGTGKTLAFGIPVLQRSVAPK 60

Query: 67  DRFS---PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           D      P   P AL +APTRELA+QV  +L    A  G+ V    GGV    +   LQ 
Sbjct: 61  DPDYAELPQGKPQALIVAPTRELALQVSGDLALAGADRGLRVLTVYGGVGYEPQLDALQE 120

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IVVGTPGRL D    + L+ISH+ A+VLDEADEMLDLGF  D+E IL  +P+ R+ +
Sbjct: 121 GVDIVVGTPGRLIDLANRRALDISHVHALVLDEADEMLDLGFLPDVERILAMTPETRQTM 180

Query: 184 MFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +FSAT+  AI             +R   + EN                D+   I  +L+ 
Sbjct: 181 LFSATMPAAIVALARTHMRHPMNIRAESSYENATVPATAQFIYQAHDLDKPEIIGRVLQA 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A   IVF  T+    R    LAE  F    L G+++Q  R  AL   R+ + RV +AT
Sbjct: 241 EDAGKVIVFTRTKRQAQRVADDLAERGFSASPLHGDMAQVAREKALTKFREDKLRVLVAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGID+  +  VI+     + +  +HR GRTGRAG  G+++  +      R + + +
Sbjct: 301 DVAARGIDVAGVSHVINYSCPEDDKTYVHRIGRTGRAGASGIAITFVDWADLARWKMINK 360

Query: 362 EANVSVVW 369
             ++    
Sbjct: 361 ALDLPFDE 368


>gi|145353388|ref|XP_001420996.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357383|ref|XP_001422899.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581232|gb|ABO99289.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583143|gb|ABP01258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 452

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 14/382 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P  + + L ERG    T  Q       L  +D++  A+TGSGKT+A+ L  
Sbjct: 64  VTTFEEASFPAYVMDDLKERGLATPTPCQCQAWPIALSGRDLIAVAETGSGKTLAYVLPA 123

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+AL +APTRELA Q+  E+    A + +  A   GGV    + 
Sbjct: 124 IVHVNAQ-PVLEKGEGPIALVLAPTRELASQIELEVAKFAASSEIKHACVTGGVPKGPQI 182

Query: 119 RD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +     G+ I V TPGRL D + G   N+     VVLDEAD MLD+GF   I  I+  + 
Sbjct: 183 KALKSGGSEICVATPGRLIDFLDGGQTNLRRTSFVVLDEADRMLDMGFEPQIRRIIAQTR 242

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIA----SENRQHSDIDYRAVLVALSDRDN 233
             R+ L+F+AT    +  +A+ + ++                  +++    +V  ++   
Sbjct: 243 CDRQTLLFTATWPVEVREVAREFIRNDPVEMRVGGAGDGLLASKNVEQIVHIVEDAEAKY 302

Query: 234 AIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           A +  +        + +VF  T+A V + T+ L    +  + L G+  Q+ER   L+  R
Sbjct: 303 AKLMDILEEEMDGSSILVFVETKALVDQLTRRLRSEGWPALGLHGDKEQKERDWVLEEFR 362

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-- 349
             R+ + I+TDVA+RG+D+  ++LV++ +   + E  +HR GRTGRAGRKG S       
Sbjct: 363 AARSPIMISTDVASRGLDVVGVKLVVNHDFPKSVEEYVHRIGRTGRAGRKGKSHTFFSIL 422

Query: 350 --QNMQRRAERLFREANVSVVW 369
                 R    + R +N S+  
Sbjct: 423 RDGKHARELAHVLRASNQSIPR 444


>gi|67619527|ref|XP_667652.1| dead box RNA helicase [Cryptosporidium hominis TU502]
 gi|54658801|gb|EAL37417.1| dead box RNA helicase [Cryptosporidium hominis]
          Length = 480

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 169/373 (45%), Gaps = 13/373 (3%)

Query: 6   NIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+P  + + +     Y   T +Q  ++       D+LV + TGSGKT+ + L +   L  
Sbjct: 94  NLPDWVLDNIMNISKYQKPTPIQSQVIPLLFSGVDLLVQSPTGSGKTLCYILPILGRL-- 151

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +ND+   A+    L ++PTRELA Q+ RE++ +    G           + + +      
Sbjct: 152 KNDKVYCAN----LILSPTRELAQQIVREIKIILDIHGKKYRCRYISGKIDKAQESNTKR 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---- 180
             I V TP RL D  R   +N+     +VLDE D++LD+GF   I+ IL  S   +    
Sbjct: 208 LDIAVSTPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSNIPKGGKV 267

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++  FSAT+   +  LA +  K  V+V +       S I    V V   D     +  L 
Sbjct: 268 QIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKIESLRQLI 327

Query: 241 YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G      +VF +++    R  K L      V A+  ++ + +R N +Q  R G+  + 
Sbjct: 328 KQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFRTGKIWIL 387

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARG+D  ++  V++ +   +P N +HR GR GRAGR G ++         + + 
Sbjct: 388 ICTDLMARGVDFKNVSCVVNYDFPHSPSNYIHRVGRCGRAGRTGYAITFFTLKDIPKIKS 447

Query: 359 LFREANVSVVWEP 371
           + +    S    P
Sbjct: 448 IAKVIKSSGADVP 460


>gi|256831947|ref|YP_003160674.1| DEAD/DEAH box helicase domain-containing protein [Jonesia
           denitrificans DSM 20603]
 gi|256685478|gb|ACV08371.1| DEAD/DEAH box helicase domain protein [Jonesia denitrificans DSM
           20603]
          Length = 544

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 135/421 (32%), Positives = 209/421 (49%), Gaps = 19/421 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F + P    I  AL+  G V+   +Q   L   L   D++  A+TG+GKT+ FGL L 
Sbjct: 23  TSFADFPLRSDIVAALASAGIVSPFPIQSLTLPVALSGHDIIGQAKTGTGKTLGFGLPLL 82

Query: 60  STLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           + ++A      D+      P A+ I PTRELAVQV ++LE   +   V +    GG +  
Sbjct: 83  NRVVAPGEEGFDQLPAPGKPQAVVIVPTRELAVQVAKDLELASSTRSVRIVQLYGGRAYE 142

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L  G  +VVGTPGR+ D ++ K L +     +VLDEADEMLDLGF  D+E IL  
Sbjct: 143 PQIAALNRGVEVVVGTPGRMIDMLKQKHLTLLRAGVIVLDEADEMLDLGFLPDVEKILAQ 202

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRD 232
           +P  R+M++FSAT+  A+  +A+ Y      +             +I          D+ 
Sbjct: 203 TPAVRQMMLFSATMPGAVVAMARRYMNQPTHIRAQDPEDLGSTVKNITQVVYRAHPLDKV 262

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  IL+  G   +++F  T+ + ++    L E  F   AL G+L Q  R  AL+  R+
Sbjct: 263 EMIARILQARGRGLSVIFTRTKRNAAKVADELTERGFAAGALHGDLGQGAREQALRAFRN 322

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ ++  VI+ ++  + +  LHR+GRTGRAG KG +V  +    
Sbjct: 323 GKVDVLVATDVAARGIDVENVTHVINYQVPEDDKVYLHRTGRTGRAGNKGTAVTFVDWED 382

Query: 353 QRRAERLFREANVSVVWEPAPSVEA---------IRERDAQRILQDPLFLDSIQGDEKKM 403
                 + +   +++  EP  +  +         I E    R+ +D      +Q +E + 
Sbjct: 383 LHTWTLINKALGLNIP-EPVETYSSSPHLFTDLNIPEGTKGRLPKDRQTRAGLQAEELED 441

Query: 404 V 404
           V
Sbjct: 442 V 442


>gi|223056226|gb|ACM80365.1| vasa [Asterias forbesi]
          Length = 715

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 181/372 (48%), Gaps = 11/372 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   +   +   +++  Y   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 260 INSFDEAQLSPEVRRNVTKAKYDRPTPVQKYGIPIINSGRDLMACAQTGSGKTAAFLLPI 319

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + +L        FS    P  + ++PTREL  Q+ +        T +   V  GG SV 
Sbjct: 320 XTGMLNNGITGSSFSDXQEPQCIIVSPTRELTSQIYKXAYKFARDTILRPVVIYGGTSVX 379

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + ++++ G H+ V TPGRL D I    + +++ K +VLDEAD MLD+GF  ++E ++  
Sbjct: 380 HQLKEVERGCHLXVATPGRLMDFINRGKVKVNNCKFLVLDEADRMLDMGFGPEMERLIYX 439

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSD 230
                   R+ LMFSAT    +   A  Y +D + + +       SDI      +     
Sbjct: 440 PDMPXKGERQCLMFSATFPNEVXEKAAEYLQDYLFLTVGRVGGAASDITQSVLEVGQYGK 499

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +D  +  +         +VF  T+ S      VL++  F   ++ G+  Q+ER  AL   
Sbjct: 500 KDQLLALLQAQDATDRTLVFVETKRSADFXASVLSQSEFPTTSIHGDREQREREEALADF 559

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           R GRA V +AT VAARG+D+P+++ V++ +L S  +  +HR GRTGR G  G +     P
Sbjct: 560 RSGRAPVLVATSVAARGLDIPNVKHVVNYDLPSGIDEYVHRIGRTGRVGNLGKATSFYDP 619

Query: 350 QNMQRRAERLFR 361
               + A  L +
Sbjct: 620 SKDSQSARALIK 631


>gi|209559794|ref|YP_002286266.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
 gi|209540995|gb|ACI61571.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
          Length = 447

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 197/460 (42%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  Q + +AL E G+VN T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   HFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                       +  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  KAEV------QVVITAPSRELATQIFDVCKQIAKYSQEEIRLANYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLAIHKATTFVVDEADMTMDMGFLDMVDKIAASLPKSVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+ SATI   +    K Y  + V   I ++      ID   V     D++  ++ IL+  
Sbjct: 181 LVVSATIPQKLQPFLKKYLTNPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTM 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYMAMLFVNTKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     + L   
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSDDSDIKELE-- 358

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D ++  +    K D E I     +
Sbjct: 359 -IMGIAFTP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I        R   R ++RA          
Sbjct: 405 KKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKK 444


>gi|32363291|sp|Q88NB7|RHLB_PSEPK RecName: Full=ATP-dependent RNA helicase rhlB
 gi|24982750|gb|AAN66919.1|AE016320_7 ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
          Length = 398

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 182/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 16  LSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTP 75

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V++   G     + +      
Sbjct: 76  PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARH 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 136 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 195

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 196 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 255

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 256 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATD 315

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 316 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEAL 375

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 376 LGRKIKCEMPP 386


>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
 gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
          Length = 834

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 211/473 (44%), Gaps = 25/473 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q+  +   L  KDV+  A TGSGKT AF + + 
Sbjct: 311 KSFQAFSLSRPILRGLTSVGFTTPTPIQQKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 370

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 371 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 427

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 428 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 487

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 488 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYL 547

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       I+F   +    R   +      +   L G +SQ++R  +++  RDG+ 
Sbjct: 548 MVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKV 607

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 608 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667

Query: 356 AERLF---REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            +      R     +V  P  S EA +            +   ++  ++++ ++L  + +
Sbjct: 668 VKAAVKTGRAQGAKIVSRPIDSAEADK------------WAAKVEEMQEEVKEILKEEKE 715

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +++A   + + R G         +     R  F  +    +    S +   G
Sbjct: 716 EKQLAQAEMEVTR-GSNLINHEKEIMSRPKRTWFETEKEKLQAKQRSLEELNG 767


>gi|262282195|ref|ZP_06059964.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
 gi|262262649|gb|EEY81346.1| ATP-dependent RNA helicase [Streptococcus sp. 2_1_36FAA]
          Length = 447

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 199/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  E      I EAL +  +V  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTEFTFKNYIQEALEDLKFVEATEVQEKLIPVVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
             L  + D          +  AP+RELA Q+ +    + + +   + V           +
Sbjct: 61  QKLNEDEDHV------QVVITAPSRELATQIYQATRQIASFSDKEIRVANYVGGTDKNRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +  HIV+GTPGR+ D ++   L I   K  V+DEAD  LD+GF + ++ I  S 
Sbjct: 115 IDKLEFSQPHIVIGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIASSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSATI   +    K Y  + V   I ++      I+   V     D++  I 
Sbjct: 175 PKDLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIENWLVSTKGRDKNAQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I R      A++F +T+         L     +V  + G+++ +ER   +  +++    
Sbjct: 235 EISRILQPYLAMIFVNTKTRADELHSYLLAQGLKVAKIHGDIAPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAIALYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             +++++  F D+   D +   +    K D E I
Sbjct: 355 RELEK---LGIKFIP-------------KMIKNGEFQDTYDRDRRANREKSYEKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVNEKRRKTKRAENRARGRAERKAKR 444


>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
 gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
          Length = 782

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 114/448 (25%), Positives = 197/448 (43%), Gaps = 17/448 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++G+   T +Q   +   +  KD++  ++TGSGKT AF + +   L    
Sbjct: 38  LDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIPILQKL---- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL I PTRELA+Q    ++ L   TG+  AV +GG  +  + + +     
Sbjct: 94  -KVRDMKGIRALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQTVHEKPD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGRL   I      +S ++ +V DEAD + ++GF + +  +L   P+ R+ L+FS
Sbjct: 153 IVIATPGRLLHVIVEMDFRLSAVQVIVFDEADRLFEMGFAEQLHEVLKRLPENRQTLLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+  +I   +K    D V V +    +    +    +     D+  A +++ R   A  
Sbjct: 213 ATLPKSIIAFSKAGLSDPVLVRLDLAEKISDKLSMMFLYCRTDDKLAAFLHLAREVVAAN 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVFC+T   V     V  +     V L  +L    R+  +Q  R     + I TD+A
Sbjct: 273 EQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLIVTDIA 332

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L++ I+    S P+  +HR GR  RAGR G ++ +   +       LF   N
Sbjct: 333 ARGVDIPLLDVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGADEVPYVIDLFLFLN 392

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             + +    SV +           + L      G   + +D L   HD        L+  
Sbjct: 393 RPLKFATTSSVSS----------DEALIGIFPDGIIDREIDFLKNVHDNSDELDDLLKKS 442

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRA 452
              +   ++  P        R +D+ + 
Sbjct: 443 ENAMQKYKKTRPQPSAESVRRAKDEVKE 470


>gi|149181221|ref|ZP_01859720.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
           sp. SG-1]
 gi|148851120|gb|EDL65271.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
           sp. SG-1]
          Length = 373

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 187/370 (50%), Gaps = 7/370 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M+   N+   + +A     +  LT VQ+  +   +  K+++  + TG+GKT+A+ L + +
Sbjct: 1   MEYLTNLKPFLQDAWKASEFTELTEVQQKAIPEAMDGKNLVCESPTGTGKTLAYLLPILN 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           ++  +  +        AL +AP+ EL +Q+ +E++     +G+     IGG +V  +   
Sbjct: 61  SIDEKKMQA------QALILAPSHELVMQIHQEVQKWGKDSGINSIALIGGANVKNQIEK 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IV+GT GR+ + I+ K L +  +K +V+DE D M+     +++  ++ S+   R
Sbjct: 115 LKKKPKIVIGTTGRIMELIKMKKLKMHEVKTIVVDEFDLMIGNEHINNVRQVIKSTMADR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L FSAT+S +   +A    +D   + +       S +++  +L    D+    +  L 
Sbjct: 175 QLLFFSATLSDSTDKVASELMEDYEVIRVNQGVVSSSQVEHGYLLSEQRDKIEV-LRKLS 233

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 A+VF ++   +S   + L      V  L+GE  + ER ++L   R G+  + + 
Sbjct: 234 NVEGIKALVFFNSLERLSEAEEKLKYQKAAVEVLAGESKKTERKHSLDKFRAGKVPMLLT 293

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  +  VIH E  ++ +  +HRSGRTGR G  G  + ++ +  +   E++ 
Sbjct: 294 TDVAARGLDISGVTHVIHFEFPTDAKQYIHRSGRTGRMGASGTVISIVTKREESFLEKMA 353

Query: 361 REANVSVVWE 370
            E    VV +
Sbjct: 354 DELKFEVVKK 363


>gi|145300612|ref|YP_001143453.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853384|gb|ABO91705.1| ATP-dependent RNA helicase DbpA [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 459

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 134/402 (33%), Positives = 210/402 (52%), Gaps = 13/402 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + E L+  GY+ +T +Q   L   L  KD++  A+TGSGKT AF L L + L   
Sbjct: 10  NLSPALQENLTSLGYLQMTPIQAQSLPLVLDGKDLIAKAKTGSGKTAAFALGLLAKLNVN 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNG 124
                      AL + PTRELA QV +E+  L      V  V   GG     +   L  G
Sbjct: 70  RLEV------QALVLCPTRELADQVAQEIRRLARALPNVKLVTLCGGTQTAPQSATLGFG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHI VGTPGR+  H+    L +S LK +VLDEAD MLD+GF ++I  ++  +P++R+ L+
Sbjct: 124 AHIAVGTPGRILKHLEQGTLELSGLKTLVLDEADRMLDMGFGEEINRVISYAPEQRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  +++  Q++ V V++ S +   +  + +   V    R +A+  +L ++  
Sbjct: 184 FSATYPEGIAQMSRGVQRNPVEVSVESLHEGSAI-EQKLYEVPAGQRLDALTWLLSHYQP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + +VFC+T+ + +     LA   F  +AL+G+L Q+ER   L    +G A + +ATDVA
Sbjct: 243 ASCVVFCNTKRACNDVADHLAAKGFSALALNGDLEQRERDQVLVRFANGSATILVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ EL+ +PE  +HR GRTGRAG++G+++ +   N  +R   +     
Sbjct: 303 ARGLDIKELGAVINYELTYDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLIEEY-- 360

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                 P P  +        + +   +   SI    K  V  
Sbjct: 361 ---QQAPMPQGDLAEIGREIKPIAPQMVTLSIDAGRKTKVRA 399



 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSG-RDRFRDDSRAFKVGGGSRDN 462
           +DPE       R  RAG       L  P E   V+L+   +          ++G   +  
Sbjct: 321 YDPEVHVHRIGRTGRAGQQGLALSLYQPNEAQRVNLIEEYQQAPMPQGDLAEIGREIKPI 380

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGV 518
                  S+  G K K  A  ++  L    GI    +G I++    ++V     V +  +
Sbjct: 381 APQMVTLSIDAGRKTKVRAGDILGALTGEGGIAGADVGKIQISEQYSYVAVKRSVGSAAL 440

Query: 519 DLLRRTVKLDKGIQLKYLG 537
             L+      +  + + LG
Sbjct: 441 KRLQEGKIKGRTYRARKLG 459


>gi|114580556|ref|XP_001154671.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 isoform 2 [Pan
           troglodytes]
          Length = 675

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/432 (25%), Positives = 215/432 (49%), Gaps = 22/432 (5%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGL------NISHLKAVVLDEADEMLDLGFRDDIEF 171
            + L NG +I+V TPGRL DH++ + +       I +L+ +V+DEAD +LD+GF ++++ 
Sbjct: 295 AQKLANGINIIVATPGRLLDHMQVRDVVLVSLSCIKNLQCLVIDEADRILDVGFEEELKQ 354

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVAL 228
           I+   P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+   
Sbjct: 355 IIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPS 414

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             R   +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+    
Sbjct: 415 EKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFF 474

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVF 346
              +  +   + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ 
Sbjct: 475 QFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALL 533

Query: 347 VIPQNMQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           ++         R  +++ V +         +  I+ +  +++++   FL     +  K  
Sbjct: 534 ILRPEELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSY 591

Query: 405 DVLLAKHDPEKI 416
                 H  ++I
Sbjct: 592 IRAYDSHSLKQI 603


>gi|312082520|ref|XP_003143478.1| ATP-dependent RNA helicase DDX41 [Loa loa]
 gi|307761359|gb|EFO20593.1| ATP-dependent RNA helicase DDX41 [Loa loa]
          Length = 657

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 187/381 (49%), Gaps = 18/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P  + +AL ++  +  T +Q   +   L  +D++  A TGSGKT+ F L L  
Sbjct: 220 MK----FPPPVIKALRDKKIICPTVIQMQGIPVALSGRDMIGIASTGSGKTLTFALPLVM 275

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGG 111
             L +     F     P  L I P+RELA Q+   +E L+           + V +CIGG
Sbjct: 276 FCLEQEVSLPFRHGEGPYGLIIVPSRELAKQIHDVIEKLFENICDGTKFPRLRVGLCIGG 335

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  + R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+GF ++I  
Sbjct: 336 LPISEQARVFERGVHVCVATPGRLSDLLSKKIFNLQVCRYLVLDEADRMLDMGFEEEIRT 395

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I      +R+ L+FSAT+   I   A++    AV VN+        ++      V   ++
Sbjct: 396 IFSFFKGQRQTLLFSATMPRKIQNFARSALVRAVIVNVGRAGAASLNVVQEIEYVRADEK 455

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              I++ L+    +  ++F   +  V    + L      V +L G   Q++R   +   R
Sbjct: 456 LTRILDCLQKTAPR-VLIFAEKKNDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFR 514

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G   V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+GRKGM+   I + 
Sbjct: 515 RGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGRKGMATTFINRR 574

Query: 351 ---NMQRRAERLFREANVSVV 368
              ++ +    L  EA   + 
Sbjct: 575 ADMSVLQDLRALLLEAGQELP 595


>gi|302837105|ref|XP_002950112.1| hypothetical protein VOLCADRAFT_60063 [Volvox carteri f.
           nagariensis]
 gi|300264585|gb|EFJ48780.1| hypothetical protein VOLCADRAFT_60063 [Volvox carteri f.
           nagariensis]
          Length = 624

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 103/397 (25%), Positives = 185/397 (46%), Gaps = 17/397 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P  Q   + L +  YV LT++Q A L   L  +D+L +A+TGSGKT+AF + L  
Sbjct: 69  TFDDLPMSQYTKDGLKKAKYVTLTAIQRAALPHALCGRDILGAAKTGSGKTLAFLIPLVE 128

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     +++      AL + PTRELAVQ+  +L+ +     +   + IGG +V  E   
Sbjct: 129 KLY--RLKWTRLDGLGALVLTPTRELAVQIFEQLQKVGHFHDLSAGLLIGGKNVQEEVLR 186

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +     +V      L       G + S L+ +VLDEAD +LD+GF   ++ I+ + P++R
Sbjct: 187 VSAMNILVCTPGRLLQHMDETPGFDTSSLQLLVLDEADRILDMGFAATMDAIVANLPRER 246

Query: 181 RMLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT + ++  LA+          V+  +       +    ++V L  + + + + 
Sbjct: 247 QTMLFSATQTKSVRDLARLSLTQPEYLAVHAEAAAPTPVKLQQAYMVVELGQKMDVLWSF 306

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRAR 296
           ++ H     IVF ST   V    +   +    V         ++           + +A 
Sbjct: 307 IKSHLKAKTIVFLSTCKQVRFVFEAFRKLRPGVPLRCLHGGMKQPKRTGVFYEFCNAQAM 366

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARG+D P ++ V+ A+   +    +HR GRT R    G ++ ++  + +   
Sbjct: 367 VLIATDIAARGLDFPTVDWVVQADCPEDAATYIHRVGRTARYLSSGRALLLLLPSERDAM 426

Query: 357 ERLFREANVSVVWEPA---------PSVEAIRERDAQ 384
                EA V +              P+++A+  +D +
Sbjct: 427 LAALTEAKVPLTQIKPNPAKQQSVSPALQALLSKDQE 463


>gi|195145352|ref|XP_002013660.1| GL24257 [Drosophila persimilis]
 gi|194102603|gb|EDW24646.1| GL24257 [Drosophila persimilis]
          Length = 703

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 187/389 (48%), Gaps = 39/389 (10%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           + F   P ++GE + ++G+   + +Q       L+  D++  AQTG+GKT+AF L     
Sbjct: 304 QCFAEYPDLLGE-IEKQGFPKPSPIQSQAWPILLKGHDMIGIAQTGTGKTLAFLLPGMIH 362

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
              ++           L +APTRELA+Q+  E++  Y+   +      GG     +  D+
Sbjct: 363 TEYQSIPRGQRGGANVLVLAPTRELALQIEMEVKK-YSFRDMRAVCVYGGGCRRMQISDV 421

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I++ TPGRL D ++ K +++S +  +VLDEAD MLD+GF   I  +L      R+
Sbjct: 422 ERGAEIIICTPGRLNDLVQAKVIDVSSITYLVLDEADRMLDMGFEPQIRKVLMDIRPDRQ 481

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +M SAT  P +  LA++Y  + ++V + S +   +           S +    +     
Sbjct: 482 TIMTSATWPPGVRRLAQSYMNNPIQVCVGSLDLAAT----------HSVKQVIELLEDES 531

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                   F +                     + G   Q +R  A+  ++ G  R+ IAT
Sbjct: 532 ENDLTLDGFMTQC-------------------IHGSRDQSDREQAIADIKSGVVRILIAT 572

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER--- 358
           DVA+RG+D+ D+  VI+ +   N E  +HR GRTGRAGR G S+  I ++    A+    
Sbjct: 573 DVASRGLDIEDISHVINYDFPRNIEEYVHRVGRTGRAGRTGTSISFITRSDWGMAQELIN 632

Query: 359 LFREANVSVVWEPAPSV----EAIRERDA 383
           +  EA+  VV E   S+    +A++ER A
Sbjct: 633 ILEEADQ-VVPEQLHSMARRFKAMKERRA 660


>gi|17537549|ref|NP_496973.1| hypothetical protein Y54G11A.3 [Caenorhabditis elegans]
 gi|4008449|emb|CAA22456.1| C. elegans protein Y54G11A.3, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 504

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 175/386 (45%), Gaps = 17/386 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL-----AE 65
           I   + + G+   + +Q  +    L  +D +  +QTGSGKT+AF L     +       E
Sbjct: 95  IMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYE 154

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            +      +P  L ++PTRELA Q+  E++  Y+  G       GG S   +    + G 
Sbjct: 155 KNDEEQKPSPFVLVLSPTRELAQQIEGEVKK-YSYNGYKSVCLYGGGSRPEQVEACRGGV 213

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D      ++++ +  VVLDEAD MLD+GF   I  IL      R + + 
Sbjct: 214 EIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALT 273

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----- 240
           SAT    +  L   Y K+AV     S +        +       D     V  +      
Sbjct: 274 SATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTA 333

Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            +      I+F  ++      +            L G  SQ +R  +L M+R G  ++ +
Sbjct: 334 AHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILV 393

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+A+RGID+PD+  V++ +   + E  +HR GRTGRAGRKG ++  +  N +   E L
Sbjct: 394 ATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGL 453

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
            +    S    P    + +R RDA++
Sbjct: 454 IQILEKSEQEVP----DQLR-RDAEK 474


>gi|1399945|gb|AAB03337.1| RNA helicase GLH-2 [Caenorhabditis elegans]
 gi|1405387|gb|AAB03510.1| GLH-2 [Caenorhabditis elegans]
          Length = 974

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 106/393 (26%), Positives = 176/393 (44%), Gaps = 25/393 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + 
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM 611

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + L+ END  +       P  + + PTREL  Q+  E      +T + +    GG++V  
Sbjct: 612 ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGY 671

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-----IEF 171
            +  ++ GA I+VGT GR+        + +   +  VLDEAD M+D           + +
Sbjct: 672 NKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNY 731

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSD 230
                 + R+ LMFSAT   ++   A+N+ K+   +    +    +            S+
Sbjct: 732 ESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSE 791

Query: 231 RDN------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           + +                       K  IVF S RA       +L+      + + G  
Sbjct: 792 KKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAR 851

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR 
Sbjct: 852 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 911

Query: 339 GRKGMSVFVIPQ--NMQRRAERLFREANVSVVW 369
           G  G +   I +  N+     R+  +A+  V  
Sbjct: 912 GNAGRATSFISEDCNLLSELVRVLSDADQLVPE 944


>gi|330720391|gb|EGG98717.1| Cold-shock DEAD-box protein A [gamma proteobacterium IMCC2047]
          Length = 284

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 104/286 (36%), Gaps = 41/286 (14%)

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           +I+ ++  + E  +HR GRTGRAGR G ++  +    +R  + + R     +     PS 
Sbjct: 1   MINYDIPYDAETYVHRIGRTGRAGRLGKAILFVANRERRMLQTIERTTRKPIERMTFPSS 60

Query: 376 EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK------HDPEKIAAGFLRIHRAGLC 429
           + I  +  +R  +    L+++    K   D L+ +       D ++IAAGF  + +    
Sbjct: 61  DEIAAQRKERFKES--LLEAMSETPKPFFDELINELTTELNCDAQQIAAGFAYMLQKDRP 118

Query: 430 APEEITPVSLV----------------------------SGRDRFRDDSRAFKVGGGSRD 461
                 P                                   ++ R+   + +  G   D
Sbjct: 119 LEVPPEPKHKARDRDNRRDRDDRRDARSDSRSDSRNDRGRKDNKNREPRESKRRSGSKVD 178

Query: 462 NFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADG 517
                  + L VG + +     ++  +   + I+   IG I +Q D + VE+      + 
Sbjct: 179 ANIAMQTYRLEVGREHQVTPGDIVGAIANEADIDSAYIGGINIQDDYSTVELPDGMPKEV 238

Query: 518 VDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
            + L++    +  + +  + G+KP     +    + K       KR
Sbjct: 239 FNHLKKVRVRNHPMHMSLMKGDKPTQDSDEPRKPQ-KRKAPSKPKR 283


>gi|312376779|gb|EFR23772.1| hypothetical protein AND_12284 [Anopheles darlingi]
          Length = 1243

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 184/373 (49%), Gaps = 14/373 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
              PQ + + ++ +G++  T +Q    +  +  +D++  A+TGSGKT+A+ L     +  
Sbjct: 85  SGFPQFMLDEIARQGFLEPTFIQAVGWSIAMSGRDMVGIAKTGSGKTLAYILPALVHISN 144

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  R +    P+AL +APTRELA Q+ +  +    + GV      GG + + +  DL+ G
Sbjct: 145 Q-PRLARGDGPIALVLAPTRELAQQIKQVSDDFGRRMGVHNTCVFGGAAKYPQENDLRRG 203

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+ TPGRL D +  +  N+     +VLDEAD MLD+GF   I  I+      R++LM
Sbjct: 204 VEIVIATPGRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQVLM 263

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----RDNAIVNILR 240
           +SAT    I  LA+ + +D +++NI S N   ++   + +          R   ++  + 
Sbjct: 264 WSATWPKEIRKLAEEFLRDYIQINIGSLNLAANENILQVIECCEEYEKENRLFMLLEKIS 323

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+F  T+  V +   ++    ++   + G+ SQ++R   L   R     + +A
Sbjct: 324 SQPDNKAIIFVETKRKVDKIVNIIRRQGWRADGIHGDKSQKDRDYVLNNFRRSPNGLLVA 383

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           TD++       D++ VI+ +  +N E+ +HR GRTGR+  KG S          +A  L 
Sbjct: 384 TDMS------TDVKFVINFDFPNNTEDYVHRIGRTGRSTNKGTSYTFFTPANASKASDLI 437

Query: 360 --FREANVSVVWE 370
              ++AN  +  E
Sbjct: 438 AVLQDANQYINPE 450


>gi|311271296|ref|XP_001928807.2| PREDICTED: LOW QUALITY PROTEIN: nucleolar RNA helicase 2 [Sus
           scrofa]
          Length = 844

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 137/591 (23%), Positives = 237/591 (40%), Gaps = 46/591 (7%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 249 FSNFPISEETIKLLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEK 308

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E        AP  L +APTRELA QV R+   +  K    VA   GG     +   +
Sbjct: 309 LQGELQDRKRGRAPQVLVLAPTRELASQVSRDFSDITKKLA--VACFYGGTPYGGQIDRM 366

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L+++ LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 367 RNGIDILVGTPGRIKDHLQNNKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDS 426

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A               +   +         +    +  L+ + +      
Sbjct: 427 EDNPQTLLFSATCPHWVYNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAA 486

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+      ++  A          G++ Q++R   L+  R
Sbjct: 487 VIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQDAQSLH-GDIPQKQREITLKGFR 545

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 546 NGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFYQHK 605

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            + +   + ++A +       PS   I +  ++  ++    LDS+             K 
Sbjct: 606 EEYQLTLVEQKAGIKFKRIGVPSPTEIIKASSKDAIR---LLDSVPPTAIGHFKQSAEKL 662

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             EK A   L    A +     +   SL++    F   +   +      +          
Sbjct: 663 IEEKGAVEALAAALAHISGATSVDQRSLINSDAGF--VTMILRCSIEMPNISYAWKELKE 720

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGI 531
            +G    ++ + ++  L    G+                 ++    V  ++      +  
Sbjct: 721 QLGEDIDSKVKGMV-FLKGKQGVC---------------FDIPTAAVTEVQEKWHDSRRW 764

Query: 532 QLKYLGGEKPDFRGYKSS---------GFKSKNSQDGATKRFKRFKGASKN 573
           QL     E+P+  G +           G +    Q    + F+  +  ++N
Sbjct: 765 QLSVAT-EQPELEGPREGYRSFRGQREGGRGFRGQQKGNRSFRGQREGNRN 814


>gi|282863805|ref|ZP_06272863.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561506|gb|EFB67050.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 492

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 122/378 (32%), Positives = 191/378 (50%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +      
Sbjct: 70  LPEPLLAALGAEGMSVPFPIQAATLPNTLVGRDVLGRGRTGSGKTLAFGLALLAR---TA 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ G+ 
Sbjct: 127 GRRAEPRQPLALVLVPTRELAQQVTDALTPYARSVRLRLAAVVGGMSIGRQASALRGGSE 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++FS
Sbjct: 187 IVVATPGRLKDLIDRGDCRLDQVDITVLDEADQMADMGFMPQVTALLDQVSPGGQRMLFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y  D V  ++   +   + +++  + V  +D+               
Sbjct: 247 ATLDRNVDLLVRRYLTDPVVHSVDPSSATVTTMEHHVLHVHGADKQATTTE--IAAREGR 304

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAAR
Sbjct: 305 VIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKSGHVTVLVATNVAAR 364

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  +A + 
Sbjct: 365 GIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPDQRRSMTRLMSDAGIR 424

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P V  +R  +A+
Sbjct: 425 ------PQVTQVRSGEAE 436


>gi|134102389|ref|YP_001108050.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915012|emb|CAM05125.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 496

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 135/454 (29%), Positives = 205/454 (45%), Gaps = 8/454 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL + G      +Q A +   L  +DVL   QTGSGKT+AFGL L +      
Sbjct: 22  LPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPLLAM----Q 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA QV   L+ L    G+ V   +GG+S  R+   L+ G  
Sbjct: 78  GSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGVD 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+R     +S ++   LDEAD+M D+GF   +  +LD  P   + L+FS
Sbjct: 138 VLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLFS 197

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  D V  ++A        +D+  +LV    + +  V          
Sbjct: 198 ATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQD--VLARIGAREGR 255

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R T+ L     +  AL G  +Q  RS  L+  R G     +AT+VAAR
Sbjct: 256 TIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAAR 315

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H E  ++P++ LHR+GRT RAG  G  V ++  + +R    +  +A V 
Sbjct: 316 GIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGVE 375

Query: 367 VVWEP-APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
                 AP+ E +      R        +  +G+  +      +   P     G     R
Sbjct: 376 ATATKVAPADEELARLTGAREPSGIAVTEPKRGESPRGGRGSRSGA-PRGGERGERGGAR 434

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
                 E+          +R R D    + G G 
Sbjct: 435 NSGGRGEQRGRGERRPQGERGRGDWSGERTGRGD 468


>gi|224006724|ref|XP_002292322.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220971964|gb|EED90297.1| DEAD/DEAH box RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 663

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 16/378 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I EAL ++     T +Q   L   L  +D++  A TGSGKT++F L L    L E 
Sbjct: 224 FPPPIMEALKKKNVKRPTPIQMQGLTVALSGRDMVGIAFTGSGKTLSFSLPLVMAALEEE 283

Query: 67  DRFS--PASAPLALAIAPTRELAVQVGRELEWLY---------AKTGVVVAVCIGGVSVH 115
            R    P   P+ + +AP+RELA Q    +               +     +  G  +  
Sbjct: 284 ARMPLVPGEGPVGIVLAPSRELARQTYEVVTEFCTALTESGGRYPSIRSQLLIGGESARD 343

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +     G H VV TPGRL D ++ + +N+   + + LDEAD MLDLGF +++  I++ 
Sbjct: 344 QLQPFRDKGVHCVVATPGRLRDFLKKRSINLDICRYICLDEADRMLDLGFDEEVGEIMNH 403

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              +R+ +++SAT        AK      V VN+      + D+      V    +   +
Sbjct: 404 FHHQRQTILYSATFPKKFQDFAKQTLVRPVVVNVGRAGAANLDVIQEVEYVKQEAKIVYL 463

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +  L+       I FC  +  V    + L     + V++ G   Q+ER+ A+ + + G+ 
Sbjct: 464 LECLQKTAPPVVI-FCEKKGDVDDIHEYLLLKGVEAVSIHGGKDQEERNEAIALYKAGKK 522

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR- 354
            V +ATD+AA+G+D  D++ VI+ ++ S  EN +HR GRTGR G+ G++   I ++ +  
Sbjct: 523 DVLVATDIAAKGLDFADIQHVINFDMPSEIENYVHRIGRTGRCGKTGVATTFINKSCEET 582

Query: 355 ---RAERLFREANVSVVW 369
                + L +EA+  +  
Sbjct: 583 TLLDLKHLLKEAHQRIPP 600


>gi|21219042|ref|NP_624821.1| DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
 gi|5763955|emb|CAB53334.1| putative DEAD-box RNA-helicase [Streptomyces coelicolor A3(2)]
          Length = 439

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 5/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+ E ++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL +      
Sbjct: 14  LPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLA---GTA 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL +  TRELA QV   L       GV +   +GG+S++R+ + L++GA 
Sbjct: 71  GRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGAE 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  +  +++ ++  VLDEAD+M DLGF   +  ILD  P   + L+FS
Sbjct: 131 VVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +++  D V V++   +   S +++  + V  +D+               
Sbjct: 191 ATLDGDVDQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHPADKYATATE--IAARDGR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+A V RFT+ L        AL    SQ +R++ L    +G   V +AT+VAAR
Sbjct: 249 VLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + DL+LV++ +  ++ ++ LHR GRT RAGR G  V ++  + +R   R+  EA + 
Sbjct: 309 GIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGIR 368

Query: 367 VVWEPAPSVEA 377
               P  S E 
Sbjct: 369 PTVTPVRSGEQ 379


>gi|330038909|ref|XP_003239737.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
 gi|327206662|gb|AEA38839.1| eukaryotic initiation factor 4a [Cryptomonas paramecium]
          Length = 390

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 186/379 (49%), Gaps = 9/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+   +   + + +   GY   + +Q+  + P L+++DV+  AQ+G+GKT  F +  
Sbjct: 16  IESFDEMGLNDKLVQGIYGYGYEKPSLIQQRGILPLLKKRDVIAQAQSGTGKTATFVIGT 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +               L I PTRELA Q+ +  + +     V   VC+GG  + R+ 
Sbjct: 76  LQNINRTTHSIC------VLTITPTRELAFQIEQSFKEIGVHLKVKTQVCVGGTRLSRDI 129

Query: 119 RDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R L +    I++ TPGRL D +      +  L+ V++DEADEM   GF+  I  I    P
Sbjct: 130 RYLLKYNPRIIIATPGRLFDILSLNTKILKKLQYVIIDEADEMFSKGFKFQIYRIFKFVP 189

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K   + +FSAT+   I  + +    + VR+ +         I    + V    +  A+ +
Sbjct: 190 KLCTIGLFSATLPKEIIQIVETIMNEPVRIFVKKNELTLEGIKQFYIAVEEKWKLEAVCD 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I R      +IV+ +++       + ++ + F+V+ L G ++Q +RS  ++  R G  RV
Sbjct: 250 IYRLMKITQSIVYVNSKKKAEWLAEKMSSNGFEVLCLHGSITQADRSAIMKNFRLGIRRV 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+ +RGID+  + LVI+ +L ++ E  +HR GR+GR G+KG++V ++ +N      
Sbjct: 310 LITTDLLSRGIDVQQVCLVINYDLPTSKEIYIHRIGRSGRFGKKGIAVNLLVKNEVFVLR 369

Query: 358 RLFREANVSVVWEPAPSVE 376
            +    N ++   P    E
Sbjct: 370 EIESYYNTTIEEMPLDINE 388


>gi|221064954|ref|ZP_03541059.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220709977|gb|EED65345.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 469

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 198/375 (52%), Gaps = 10/375 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L + GY  +T +Q A L   L+ KD++  A TGSGKT AFGL +   
Sbjct: 16  FSALPLSPEMLANLQQLGYAQMTPIQAASLPLTLQGKDLIAQASTGSGKTAAFGLPMVDR 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L   N R+    A  AL + PTRELA QV  E+  L   +  + V    GGV    +   
Sbjct: 76  L---NPRW---FAVQALVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRNQIAS 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAHIVVGTPGR+ D +    L+I +LK +VLDEAD MLD+GF  DIE ++   P  R
Sbjct: 130 LENGAHIVVGTPGRVMDLMERGKLDIGNLKTLVLDEADRMLDMGFLGDIETVVRQCPVDR 189

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I +LA  + +D   V +A+++           + A   +   +  +L 
Sbjct: 190 QTLLFSATYPEGIASLASRFMRDPQTVKVATQHSAGKIEQRWYEVGARE-KVATVARLLA 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   +++I FC+T+         L    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 249 HFRPESSIAFCNTKQQCRDVVSELQAQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+ DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++  +      ++ 
Sbjct: 309 TDVAARGLDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 361 REANVSVVWEPAPSV 375
           +    +  + P   +
Sbjct: 369 QLQGRASQFFPVDEL 383



 Score = 46.9 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E +A   + +   G     E            F  D      GGG            +
Sbjct: 347 DAEGLALNLVSMDEMGSVGKIEQL---QGRASQFFPVDELTPAAGGG---LLPPMMTIQI 400

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
             G K+K  A  +M  +C   G +R  IG I V    T+V V           +   K
Sbjct: 401 IGGRKEKIRAGDVMGAMCADFGYSRDQIGKISVNDFSTYVAVDRRIASAACARLNAGK 458


>gi|220914235|ref|YP_002489544.1| DEAD/DEAH box helicase [Arthrobacter chlorophenolicus A6]
 gi|219861113|gb|ACL41455.1| DEAD/DEAH box helicase domain protein [Arthrobacter
           chlorophenolicus A6]
          Length = 631

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 122/373 (32%), Positives = 191/373 (51%), Gaps = 4/373 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + + L+ +G V    +Q   L   L  +DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFAALGTPKALADTLTAQGIVEPFPIQVKTLPDTLSGRDVLGRGRTGSGKTIAFAIPL 60

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E   F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+
Sbjct: 61  VARLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+  PGRL D IR + L++  ++  VLDEAD M DLGF   ++ ++D +P
Sbjct: 121 EKALRAGVDIVIACPGRLEDLIRQRILSLEAVEITVLDEADHMADLGFLPVVKKLMDMTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  + + Y  + +  ++       + +++  ++V        ++ 
Sbjct: 181 SQGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  + F  T+    +  K L +     V L G LSQ  R   L    +G  RV
Sbjct: 241 ELASGAGRRVL-FMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 300 LVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVK 359

Query: 358 RLFREANVSVVWE 370
           +L + A V V +E
Sbjct: 360 KLMKAAGVEVSFE 372


>gi|78063799|ref|YP_373707.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
 gi|77971684|gb|ABB13063.1| ATP-dependent RNA helicase DbpA [Burkholderia sp. 383]
          Length = 465

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 130/371 (35%), Positives = 195/371 (52%), Gaps = 8/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++       L++ GYV++T +Q A L   L  +D++  A+TGSGKT AF LAL + L   
Sbjct: 13  SLTPATLANLAQLGYVDMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLD-- 70

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
               +      A+ + PTRELA QV +E+  L   +  V V    GG  +  + + L++G
Sbjct: 71  ----ARRFDVQAMILCPTRELADQVTQEVRRLARAEENVKVLTLCGGTPMRPQTQSLEHG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+
Sbjct: 127 AHIVVGTPGRIMDHLDRGNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLL 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L ++  
Sbjct: 187 FSATYPDGIAKLSQQF-LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRP 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVA
Sbjct: 246 VSTIAFCNTKQQCRDLLDVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +   
Sbjct: 306 ARGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQAQK 365

Query: 365 VSVVWEPAPSV 375
             V W P   +
Sbjct: 366 REVEWHPLAEL 376



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EV 513
           G+           +  G K K     ++  L   +G + + IG I V    T+V     V
Sbjct: 380 GTDTLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVALERGV 439

Query: 514 SADGVDLLRRTVKLDKGIQLKYLGGE 539
           + D +  L       K ++++ +  E
Sbjct: 440 AHDALRKLNAGKIKGKRVKVRLMDEE 465


>gi|197246501|gb|AAI69082.1| Ddx23 protein [Rattus norvegicus]
          Length = 798

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 374 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 433

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 434 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 493

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 494 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 553

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 554 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 613

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 614 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 673

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 674 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 733

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 734 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 768


>gi|223590058|sp|A5DDF4|PRP5_PICGU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|190345338|gb|EDK37207.2| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 16/404 (3%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   L E+ GY   + +Q   L   +  +D++  A TGSGKT+AF + L   ++ +
Sbjct: 273 LPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIM-D 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ + + PTRELA+Q+ +EL        + V  C GG  +  +  DL+ G 
Sbjct: 332 QPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGT 391

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D +   G  +++L+    +VLDEAD M D+GF   +  +L      ++M
Sbjct: 392 EIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQM 451

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV------ 236
           ++FSAT    + +LA+++  D + +     +    +I  R VL+  S   +         
Sbjct: 452 VLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLK 511

Query: 237 ---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                         ++F   + +       L  +    + + G   Q +R +A++   D 
Sbjct: 512 IVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQISCIVIHGGKDQVDRKHAIKQFSDK 571

Query: 294 RA-RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              RV IAT +AARG+D+  L LVI+ +  S+ E+ +HR GRTGRAG  G +V ++  + 
Sbjct: 572 NGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQ 631

Query: 353 QRRAERLFREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDS 395
           +R    L R   +S   +  P+ +++I ++  +++       +S
Sbjct: 632 EREIRDLVRAMKMSGKVDDIPAELQSIADKFLKKVKSGEEKFNS 675


>gi|56963462|ref|YP_175193.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
 gi|56909705|dbj|BAD64232.1| ATP-dependent RNA helicase [Bacillus clausii KSM-K16]
          Length = 453

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 104/350 (29%), Positives = 171/350 (48%), Gaps = 9/350 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + LS  G    T +QE ++   L  KDV+  +QTG+GKT AF L +   L  E 
Sbjct: 11  LNERLLKGLSAIGVKRPTEIQERLIPAILNRKDVIGQSQTGTGKTFAFLLPIIEQLDIEQ 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEW---LYAKTGVVVAVCIGGVSVHRERRDLQN 123
           +         A+  APTREL  Q+  EL+     Y           G     + +R    
Sbjct: 71  NEV------QAVITAPTRELCAQLFDELKKLIVYYDGQVDAQLFVGGTDRKRQAQRLSTK 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIV+GTPGR+ D +    L +   K +V+DEAD+MLD+GF +D++ +     +  +ML
Sbjct: 125 QPHIVIGTPGRIADLVNTSSLLVYTAKTLVVDEADQMLDMGFLEDVDKVAGRLAEDLQML 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   +    K Y  +   V++  E      + ++ V V   D+   +   +R   
Sbjct: 185 VFSATVPEKLQPFLKKYMNNPRHVHVQPEKLAAERVTHQLVPVRHRDKLTVLKETIRGLN 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AI+F +T+      T  LA     V  L G L+ +ER   ++ + D   +  +ATD+
Sbjct: 245 PYLAIIFTNTKEQADEVTAALATEDILVDCLHGGLAPRERKKVMKRVEDLSIQYLVATDL 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           AARGID+  +  +I+     + +  +HR GRT RAG  G+++ +  Q+ +
Sbjct: 305 AARGIDIKGVTHIINYAFPQDLDFYVHRVGRTARAGADGIALSLYEQSDE 354


>gi|146293591|ref|YP_001184015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|145565281|gb|ABP76216.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
           CN-32]
          Length = 427

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 197/402 (49%), Gaps = 4/402 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTED 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L++GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRSGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPVKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      + +   + SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNNPLEYQLQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           V E     EA  +  A+ + Q           +KK   +  A
Sbjct: 377 VREQIVGFEADDDMPAELLEQAKPVAKPEGTGKKKRKQLPQA 418


>gi|304411815|ref|ZP_07393426.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|307303417|ref|ZP_07583172.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
 gi|304349675|gb|EFM14082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
 gi|306913777|gb|EFN44199.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
          Length = 427

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 190/381 (49%), Gaps = 4/381 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +   + SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNAPLEYQLQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQ 388
           V E     EA  E  A+ + Q
Sbjct: 377 VREQIVGFEADDEMPAELLEQ 397


>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
 gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 488

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 134/416 (32%), Positives = 222/416 (53%), Gaps = 15/416 (3%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           +  KDV+  AQTG+GKT AFG      +  +N       A  AL IAPTRELAVQ   EL
Sbjct: 1   MAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNP------AVQALIIAPTRELAVQSQEEL 54

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
                  GV V    GG S+ ++ + L++GAHIVVGTPGRL D I+ K L ++ ++ ++L
Sbjct: 55  FRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLNQIETLIL 114

Query: 155 DEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           DEADEML++GF +DIE I+   P++R+ L+FSAT+  AI  +   + K+   V IA++  
Sbjct: 115 DEADEMLNMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAKEL 174

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
               +D   + V  +++ + +  ++     + +IVF  T+  V   T+ L    F+   +
Sbjct: 175 TTELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGI 234

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+L Q +R   L+  ++G   V +ATDVAARG+D+  +  V + ++  +PE+ +HR GR
Sbjct: 235 HGDLDQGKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGR 294

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA---IRERDAQRILQDPL 391
           TGRAG+ G S+  +  N     + +       +      + E     +++ A + ++   
Sbjct: 295 TGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPATAEEAFQAKKKVALKKIERDF 354

Query: 392 FLDSIQGDEKKM---VDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
             +SI+ + +K       L A+  PE++A   L +    +  P+ +T V +   + 
Sbjct: 355 ADESIRSNFEKFGKDARKLAAEFSPEELAMYILSLT---VQDPDALTEVEIAREKP 407


>gi|22536473|ref|NP_687324.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
           2603V/R]
 gi|25010353|ref|NP_734748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae NEM316]
 gi|76787716|ref|YP_329013.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
 gi|77404947|ref|ZP_00782048.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
 gi|77410606|ref|ZP_00786966.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|22533303|gb|AAM99196.1|AE014204_14 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae 2603V/R]
 gi|23094705|emb|CAD45924.1| unknown [Streptococcus agalactiae NEM316]
 gi|76562773|gb|ABA45357.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae A909]
 gi|77163321|gb|EAO74272.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae CJB111]
 gi|77176386|gb|EAO79154.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
           agalactiae H36B]
          Length = 447

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 110/465 (23%), Positives = 197/465 (42%), Gaps = 26/465 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I  AL E  +V+ T VQ  ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D          +  AP+REL  Q+ +  + +   +   + V         + + 
Sbjct: 62  KLDESSDDV------QVVITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  S P
Sbjct: 116 EKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++L+FSATI   +    K Y  + V   I +       ID   +     D++  I+ 
Sbjct: 176 KDVQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L+ +  +V  + G ++ +ER   +  +++     
Sbjct: 236 LSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             +++++  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGINFIP-------------KVIKNGEFQDTYDRDRRNNREKSYQKLDTEMIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
               +  +      ++I        R   R  +RA          
Sbjct: 400 LVKKKKKKIKPGYKKKIQWKVDEKRRKERRASNRAKGRAERKAKK 444


>gi|332834199|ref|XP_003312636.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Pan
           troglodytes]
          Length = 643

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|46128439|ref|XP_388773.1| hypothetical protein FG08597.1 [Gibberella zeae PH-1]
          Length = 620

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/414 (26%), Positives = 182/414 (43%), Gaps = 26/414 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  I   + E +   GY   T +Q+  +   L   DV+  AQTGSGKT A+ + +
Sbjct: 133 ISSFKDGGIHPAMLENIELCGYDVPTPIQKFTIPSILTGHDVIGIAQTGSGKTAAYLIPI 192

Query: 59  ASTLLAENDRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
            S L+ +  + +                   PL L + PTRELA+Q+  E   L  +T +
Sbjct: 193 LSKLMGKAKKLAATRPNPITFRPGMDEVTAEPLVLIVVPTRELALQIFNEARKLCYRTML 252

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLD 162
              V  GGV +  +   L  G  I+VGTPGRL D I+         L+ +V+DEADE+L+
Sbjct: 253 RPGVVYGGVPISEQISLLSMGCDILVGTPGRLVDFIQRPRNLTLRRLRYMVIDEADELLN 312

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD----AVRVNIASENRQHSD 218
             + +++  IL    +    + FS   +          +       VR  +       ++
Sbjct: 313 DDWAEELNPILSGGEQDEGNVKFSLFSATFPKAARDLAKNYLAASHVRFRVGRAGSTTAN 372

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I    +     ++   +V +L        I+F ++R S       L      V ++  + 
Sbjct: 373 IRQIVLQAEGHEKRELLVGLLEEMHGIRTIIFVNSRQSADNLDDFLFNMKLPVTSMHSDR 432

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGR 334
           +QQER  A++  R G A + IAT V ARGID+ ++  VI+ +L S      E   HR GR
Sbjct: 433 TQQEREAAMRAFRSGNAPILIATGVTARGIDVQNVMHVINYDLPSIEYGGIEEYTHRIGR 492

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           TGR G +G++     +  +     L R    +    P    + + E DA+  L+
Sbjct: 493 TGRIGHRGVATSFFSERDEPLGSVLTRTLLETDQEIPEFLQQYVPEGDARANLK 546


>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
          Length = 834

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 210/473 (44%), Gaps = 25/473 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 311 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 370

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 371 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 427

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 428 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 487

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 488 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYL 547

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       I+F   +    R   +      +   L G +SQ++R  +++  RDG+ 
Sbjct: 548 MVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKV 607

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 608 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667

Query: 356 AERLF---REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            +      R     +V  P  S EA +            +   ++  ++++ ++L  + +
Sbjct: 668 VKAAVKTGRAQGAKIVSRPIDSAEADK------------WAAKVEEMQEEVKEILKEEKE 715

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +++A   + + R G         +     R  F  +    +    S +   G
Sbjct: 716 EKQLAQAEMEVTR-GSNLINHEKEIMSRPKRTWFETEKEKLQAKQRSLEELNG 767


>gi|322700332|gb|EFY92088.1| ATP-dependent RNA helicase DBP4 [Metarhizium acridum CQMa 102]
          Length = 796

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 8/374 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  Q     L    +  LT VQ+  +   L+  DVL +A+TGSGKT+AF + +
Sbjct: 49  IKTFSDLPLSQPTITGLKASHFQTLTEVQQQAIPLALKGNDVLGAAKTGSGKTLAFLIPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELAVQ+   L  +         + IGG ++  E 
Sbjct: 109 LEKLY--RAQWTEFDGLGALIISPTRELAVQIFEVLRKIGRYHVFSAGLVIGGKNLKEEA 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  GL+ ++L+ +VLDEAD ++D+GF+  ++ +++  PK
Sbjct: 167 ERLARMNILVCTPGRMLQHLDQTAGLDANNLQILVLDEADRIMDMGFQSAVDALVEHLPK 226

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ LMFSAT S  ++ LA+   K+   V++     +   +++    +   L ++ + + 
Sbjct: 227 SRQTLMFSATQSKKVSDLARLSLKEPEYVSVHEAATSATPTNLQQHYITTPLPEKLDTLY 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
             L+ +     IVF S+   V    +        +  L     Q++ +           +
Sbjct: 287 GFLKSNLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQRQVARLEITSRFTAAK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARGID P ++ VI  +   + +  +HR GRT R    G +V  +  + + 
Sbjct: 347 HSCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRTARYQSNGRAVLFLDPSEEP 406

Query: 355 RAERLFREANVSVV 368
              +   +  + + 
Sbjct: 407 GMVKRLEQKKIPIQ 420


>gi|315046986|ref|XP_003172868.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
 gi|311343254|gb|EFR02457.1| ATP-dependent RNA helicase DED1 [Arthroderma gypseum CBS 118893]
          Length = 596

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 92/389 (23%), Positives = 168/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+   +  ++   +   GYV  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 IKSFDEAGLHPIMLNNIKLCGYVVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 186 LSRLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 246 LRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMDKPHILSLCRVRYTIIDEADELL 305

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 306 KSDWETEFTKILAGGDINEDADHRYMMFSATFNKGCRQVARKFLASDYVRIRIGRVGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 366 LNVTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT ++ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 426 DRTQREREDAIRAFKTAKSPILIATAISARGLDIKNVMHVVNYDLPSVQHGGIDEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 486 GRTARIGNPGLATSFYNDKNSDIASDLVK 514


>gi|284033244|ref|YP_003383175.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283812537|gb|ADB34376.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 815

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 118/366 (32%), Positives = 182/366 (49%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +P+ I +AL     V    +QE  L   L   D++  A+TG+GKT+ FG+ L    +   
Sbjct: 2   LPE-ICDALDRVNIVEPFPIQEMTLPVALMGTDLIGQARTGTGKTLGFGIPLLQRTISPG 60

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             + +  +    P AL + PTREL +QV ++L        V +    GGV+   +   L+
Sbjct: 61  EPDYEELAAPGKPQALVVTPTRELTIQVAKDLTTASTVRTVRILTIYGGVAYEPQLEMLK 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +G  +VVGTPGRL D      L++SH+K +VLDEADEMLDLGF  D+E IL  +P+ R+ 
Sbjct: 121 SGVDVVVGTPGRLLDLANRGVLDLSHIKVLVLDEADEMLDLGFLPDVERILRKTPELRQT 180

Query: 183 LMFSATIS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+                 +R     + +               D+   +  IL+
Sbjct: 181 MLFSATMPSAVIGLARTHMRHPLNIRAESHEDTQMVPTTAQFVYRAHDLDKPEVVARILQ 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++FC T+    R T  LA+  F+  A+ G+L+QQ R  AL   R  +  V I 
Sbjct: 241 AEDRGRVMIFCRTKREAGRLTDDLADRGFKAAAIHGDLNQQARERALTRFRGDKIDVLIC 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+  +  VI+     + +  +HR GRTGRAG  G++V  +      R + + 
Sbjct: 301 TDVAARGIDVEGVTHVINNTCPEDEKAYIHRIGRTGRAGASGIAVTFVDWADVTRWKTIN 360

Query: 361 REANVS 366
           +  ++ 
Sbjct: 361 KALDLP 366


>gi|195379947|ref|XP_002048732.1| GJ21163 [Drosophila virilis]
 gi|194143529|gb|EDW59925.1| GJ21163 [Drosophila virilis]
          Length = 519

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 201/440 (45%), Gaps = 25/440 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G   +T +QE  +   L  KD + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLAKQLTKLGLKGVTPIQENCIPAILSGKDCIGAAKTGSGKTFAFALPILEKLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-----ILR 240
           SAT+   +   +               +    D   +  L+      + ++         
Sbjct: 188 SATMKDFMKESSIFPIAKDCLEWSQESDVATVDTLEQRYLLCADYDRDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L+    + V L G + Q+ER  AL   +    R  IA
Sbjct: 248 QNENANVMIFTNTKKYCQLLSMTLSSMEIENVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKG+++ +   P++++     
Sbjct: 308 TDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGLAISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEAEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLCA 430
            DP+++ A + +  +  L  
Sbjct: 425 KDPDQMEALYRKKQKDKLRE 444


>gi|6137207|gb|AAF04377.1|AF188678_1 P72 DEAD box protein [Pisum sativum]
          Length = 716

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 172/371 (46%), Gaps = 7/371 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
              P  I + +   G+   T +Q       L+ KD++  A+TGSGKT+ + L     + +
Sbjct: 157 SGFPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAF--ITS 214

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +P   P  L +    ELA Q+  E       + +      GG     + RD+  G
Sbjct: 215 SALIITPKWGPTILVLHQQGELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRG 274

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D +  + +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LM
Sbjct: 275 ADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLM 334

Query: 185 FSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           F+AT    +  +A +       V +    E   +  I     ++A  ++   + +IL+  
Sbjct: 335 FTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILQSQ 394

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + I+   +   +           F   A+ G+ SQ +R + L   R GR  V +ATD
Sbjct: 395 DQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIRGDKSQADRDHVLNQFRSGRTPVLVATD 454

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+ D+ +V++    +  E+ LHR GRTGRAG  G++         + A  L + 
Sbjct: 455 VAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKI 514

Query: 363 ---ANVSVVWE 370
              AN  V  E
Sbjct: 515 LEGANQKVPPE 525


>gi|152060505|sp|A5DIX5|ROK1_PICGU RecName: Full=ATP-dependent RNA helicase ROK1
          Length = 537

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 95/400 (23%), Positives = 186/400 (46%), Gaps = 10/400 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   L   GY   T++Q   +      +D++  A TGSGKT+A+ + +A  L++ 
Sbjct: 112 NLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISS 171

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +       + IAPT ELA+Q+ + L  +   + + V +    V+       +    
Sbjct: 172 PK--TKNYGIRGVVIAPTNELAIQIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANK 229

Query: 126 -HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRML 183
             +++ TP RL D ++ + +++S ++ +V+DEAD++ D GF +   E +   +   RR  
Sbjct: 230 FDVLICTPLRLIDLVKKEQVDLSKVEHLVIDEADKLFDHGFVEQTDEILSHCTLPTRRTS 289

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH- 242
           MFSATI   +  +A +  KD +R+ +  +    + ID + V     +     +  +    
Sbjct: 290 MFSATIPSGVEEMANSIMKDQIRIIVGHKEGASTSIDQKLVFTGNEEGKLLAIRQMVQQG 349

Query: 243 -GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  +          L      V  +  E + ++R  A++  ++G A V I T
Sbjct: 350 EFKPPIIIFLQSIPRAKALFHELIYDKLNVEVIHAERTPKQREEAIRRFKNGDAWVLITT 409

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE---R 358
           DV ARG+D   + LVI+ ++    +  +HR GRTGR G++G +V    +  +   +    
Sbjct: 410 DVLARGVDFKGVNLVINYDVPQTSQAYVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLN 469

Query: 359 LFREANVSVVWEP-APSVEAIRERDAQRILQDPLFLDSIQ 397
           + +++     +     S+E + +++ Q+I Q  +    I 
Sbjct: 470 VMKQSGCHEGYSEWMESMEKLTKKEKQQIKQHEIKRKKIS 509


>gi|167035545|ref|YP_001670776.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida GB-1]
 gi|166862033|gb|ABZ00441.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 489

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 182/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 107 LSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTP 166

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V++   G     + +      
Sbjct: 167 PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARH 226

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 227 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 286

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 287 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 346

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 347 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATD 406

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 407 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEEL 466

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 467 LGRKIKCEMPP 477


>gi|85000681|ref|XP_955059.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65303205|emb|CAI75583.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 451

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 175/381 (45%), Gaps = 15/381 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  E 
Sbjct: 61  LKPEILRAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEA 120

Query: 66  -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSV 114
                  +D   P S    + I+ TRELA Q+  E +        V    +         
Sbjct: 121 EEGKRDADDNVKPVSRVSCVGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKD 180

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFIL 173
               +D     HI+VGTPGRL   ++ K LN+  +K  VLDE D+ L+    R D++ I 
Sbjct: 181 VAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQDVQSIF 240

Query: 174 DSSPKKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            S+PKK++++ FSAT++  I     +  Q                 +    V +A SD++
Sbjct: 241 LSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQYYVKLAESDKN 300

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++L        I+F  + +       +L E  F  +A+   L Q ER N     ++
Sbjct: 301 RKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERINRYTQFKN 360

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
              R+ +ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +    
Sbjct: 361 FDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAITFVSSPE 420

Query: 352 MQRRAERLFREANVSVVWEPA 372
              + E + +   V++   PA
Sbjct: 421 DSSQLEDVQKRFEVNISEIPA 441


>gi|326795505|ref|YP_004313325.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546269|gb|ADZ91489.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 443

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 4/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS-TLLA 64
           N+P  + +++SE G+   + +Q A L   L   D++  AQTG+GKT AF LA+ S  L  
Sbjct: 67  NLPDRVLKSVSEMGFEYCSEIQAATLPATLEGYDLIGQAQTGTGKTAAFLLAMVSDFLDY 126

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
             +     +    L IAPTRELA+Q+  E E +       V+++  G     ++R     
Sbjct: 127 PVEEERARNMARGLIIAPTRELALQIADEAEKITQNCSLNVISLVGGMSYEKQKRALETE 186

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  R K   ++ ++ +VLDEAD ML +GF  D++ I+  +P K R  
Sbjct: 187 RVDILVATPGRLLDFARSKKAMLNKVEVLVLDEADRMLSMGFIPDVKSIIRMTPHKERRQ 246

Query: 184 MF--SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
               SAT    I  LA+ +      V++  +   + +ID     V    +   + +++  
Sbjct: 247 TMLFSATFPKDIQNLARQWTYFPKEVSVVPKEATNKNIDQVIYTVEADQKWPVLKSLIED 306

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
            G +  I+F + R       ++L E       LSGE+SQ +R   L+  +DGR +V +AT
Sbjct: 307 DGNQRTIIFANRRDETRELYELLKEAKINCAILSGEVSQDKRVKTLKNFKDGRIQVLVAT 366

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI + ++ELV++  L  +PE+ +HR GRTGR G  G SV    ++       +  
Sbjct: 367 DVAGRGIHVDNIELVVNYTLPEDPEDYVHRIGRTGRGGEMGKSVSFASEDDAFLIPEIEG 426

Query: 362 EANVSVVWE 370
                +  E
Sbjct: 427 VVGEKIRCE 435


>gi|270000966|gb|EEZ97413.1| hypothetical protein TcasGA2_TC011242 [Tribolium castaneum]
          Length = 761

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 174/385 (45%), Gaps = 6/385 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L   +
Sbjct: 40  LSYNVLKGITKRGYQQPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMFEKLKIRS 99

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG+  AV +GG S+  +   +     
Sbjct: 100 AKA----GARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDDQFSAIHGNPD 155

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         L ++ ++ VV DEAD + ++G  + +  I++  P  R+ ++FS
Sbjct: 156 IIVATPGRFLHVCIEMELKLNSVEYVVFDEADRLFEMGLGEQLTEIVNRLPDARQTVLFS 215

Query: 187 ATISPAITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   +   AK    D V  R+++ S+  +   + Y  V          ++        
Sbjct: 216 ATLPKVLVEFAKAGLNDPVLLRLDVESKIPEELQLWYIIVRPEERLAALLVLLKTHIDNK 275

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF +TR  V     +L         +   L    R         G+ +V + TDVA
Sbjct: 276 QQTVVFAATRHHVEYIHMILDRVGVSNTYIYSNLDPSARKINAAKFSTGKVKVLVVTDVA 335

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 336 ARGIDIPQLDNVINYNFPAKSKLFVHRVGRCARAGRSGTAYSLVTPDEYPYLLDLHLFLG 395

Query: 365 VSVVWEPAPSVEAIRERDAQRILQD 389
             +  +     E    +  Q +L++
Sbjct: 396 RPLSIKTRTENEGSVGKIPQALLEE 420


>gi|116493012|ref|YP_804747.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
           25745]
 gi|116103162|gb|ABJ68305.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
           25745]
          Length = 453

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 118/474 (24%), Positives = 211/474 (44%), Gaps = 28/474 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   +  AL E  +   T VQ+ ++      K V+  +QTGSGKT AF L +
Sbjct: 1   MNEFQKFNLKPFLMTALDEINFKTPTPVQDKVIPLIADGKSVVGQSQTGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV---AVCIGGVSVH 115
            + +  E       +A  A+   P+RELA Q+  + + L + + V +       G     
Sbjct: 61  FNNIDPE------LNAIQAVITTPSRELAYQIYEDAKQLASASEVKIEIGNYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +   +   I++GTPGR+ D ++ + LN   +K +V+DEAD  LD+GF + ++ I  +
Sbjct: 115 QVEKLGHHQPAIIIGTPGRVLDLLKERALNFRQVKYMVIDEADMTLDMGFLNAVDQIAAA 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P K ++L+FSATI   +    K Y    V   I +E      I    +    S ++N I
Sbjct: 175 MPSKLQILVFSATIPQRLNVFLKKYMDHPVIEEIPTETTISPTIKNILISTKSSGKNNLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +T+      T  L      V  + G +  +ER   ++ +   R 
Sbjct: 235 YKLLTMGEPYLALVFTNTKERADELTDYLKAQGLDVAKIHGGIQPRERKRIMKDIHRLRY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  + LVI+ ++ ++ E  +HR GRTGR G  G ++ +   N + +
Sbjct: 295 QYVVATDLAARGIDIDGVSLVINDDIPTDLEFFIHRVGRTGRNGMSGTAITLYMPNEEDK 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
              + +   ++ + +   + E +               D+   D ++   +   K DP  
Sbjct: 355 VADVEK-MGITFLPQQIRNNELV---------------DTYDRDRRQTRRLSQKKLDPTM 398

Query: 416 IAAGFLRIHRAGLCAPEEITP-VSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
           I     +  +        I   +S    RDR  +  +A +    ++     +  
Sbjct: 399 IGMVKKKKKKVKPGYKRRIRKAISEKEIRDRRMEQHQAVREAKKAKIKQSRNKR 452


>gi|323173106|gb|EFZ58737.1| ATP-dependent RNA helicase srmB [Escherichia coli LT-68]
          Length = 442

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 190/409 (46%), Gaps = 8/409 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + E  P   A  E+   +  +  L   + +   K+   V     D + I
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKPRVKKRHRDTKNI 424


>gi|321249945|ref|XP_003191631.1| pre-mRNA splicing factor RNA helicase PRP28 [Cryptococcus gattii
           WM276]
 gi|317458098|gb|ADV19844.1| Pre-mRNA splicing factor RNA helicase PRP28, putative [Cryptococcus
           gattii WM276]
          Length = 737

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 115/412 (27%), Positives = 179/412 (43%), Gaps = 33/412 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP  I + + E GY   + +Q   +   ++ +D++  A+TGSGKT AF + +   +    
Sbjct: 322 IPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLP 381

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                +    P AL +APTRELA Q+  E        G      +GG SV  ++  L++G
Sbjct: 382 PLNDDNRHLGPYALILAPTRELAQQIEAETRKFAIPLGYKCVSIVGGRSVEEQQFALRDG 441

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D +    L +S  + VV+DEAD M+DLGF  D+ FILDS P       
Sbjct: 442 AEIIIATPGRLKDMVDKSILVMSQCRYVVMDEADRMVDLGFEVDLNFILDSMPATFVKPD 501

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------------------- 221
            +  + P      + ++   +         +     Y                       
Sbjct: 502 DAVALQPTTEGDWQGWRVTTLFSATMPPAVERLARKYLIKPATVVIGNAGEAVDTVEQRV 561

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
             V      +   I  +         IVF + + +     K + +     V L    SQ+
Sbjct: 562 EFVHGDEKKKARLIEILRTIGLPPPMIVFVNQKKTADMVVKYVQQAGMSGVTLHSGKSQE 621

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  ALQ +RDG   V +ATD+A RGID+PD+ LVI+ ++S   E  +HR GRTGRAG+ 
Sbjct: 622 QREAALQALRDGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIGRTGRAGKT 681

Query: 342 GMSVFVIPQNMQRRAERL--------FREANVSVVWEPAPSVEAIRERDAQR 385
           G+++  +  +       L          + N  +    A      RE   +R
Sbjct: 682 GVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTREMKRKR 733


>gi|161486758|ref|YP_789265.2| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 507

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 125 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 184

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 185 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 244

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 245 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 304

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 305 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 364

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 365 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 424

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 425 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 484

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 485 LLGRKITCEMPPA 497


>gi|156544419|ref|XP_001607535.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Nasonia vitripennis]
          Length = 596

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 141/386 (36%), Gaps = 22/386 (5%)

Query: 1   MKIFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +         I + +   GY   T +Q   +   L+ + +L  A TGSGKT +F
Sbjct: 133 IESFEQLSTEFKIGSDILQNMRTCGYNQPTPIQMQAIPVMLQGRQILACAPTGSGKTASF 192

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS- 113
            L +   L     +        A+ ++PTRELA Q  RE   L    G  V +       
Sbjct: 193 LLPIIHQLNGPRKK-----GFRAIILSPTRELAKQTYRECIRLSEGRGFRVHIISKINQA 247

Query: 114 -VHRERRDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDD 168
                 +  Q    ++      +    +        N+  L     D+  E    GF++ 
Sbjct: 248 LTKYGPKSSQKFDILITTPKRLVFLLNQEPPAISLNNVEWLIVDEADKLFEEGTRGFKNQ 307

Query: 169 IEFILDSSPKKRRM--LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           +E I  +   +     +  +            N +           +           + 
Sbjct: 308 LEEISKACTNENIRRGMFSATNTPAVTKWCRHNLKGLVTVTIGQRNSAADLVEQQLLFVG 367

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +   +  A  NI++       +VF  ++       K L      V  +  + +Q +R N 
Sbjct: 368 SERGKLVAFRNIIQRGLTPPVLVFVQSKERAQELFKELIYDGINVDLIHSDRTQTQRDNV 427

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  R+G+  V I T++  RGID   + LVI+ +   +  + +HR GRTGRAG KG ++ 
Sbjct: 428 VRCFREGKIWVLICTELMGRGIDFIGVNLVINYDFPPSAISYIHRIGRTGRAGHKGKAIT 487

Query: 347 VIPQNM---QRRAERLFREANVSVVW 369
              +      R    + R +   V  
Sbjct: 488 FFTEQDTTNLRSIAAVMRASGCDVPE 513


>gi|120598331|ref|YP_962905.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|120558424|gb|ABM24351.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
          Length = 427

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 197/402 (49%), Gaps = 4/402 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTED 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L++GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRSGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      + +   + SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNNPLEYQLQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           V E     EA  +  A+ + Q           +KK   +  A
Sbjct: 377 VREQIVGFEADDDMPAELLEQAKPVAKPEGTGKKKRKQLPQA 418


>gi|147774689|emb|CAN74342.1| hypothetical protein VITISV_005473 [Vitis vinifera]
          Length = 661

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 178/369 (48%), Gaps = 6/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+   GY   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 266 LSPELLKAVERAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLP 325

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +   +  R    L+  
Sbjct: 326 PISEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVVIATPGRLIDCLERR 385

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++      + D            + V + +A    +L   ++ E + +     R   M
Sbjct: 386 YAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEK-KIYRTTYM 444

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT+ PA+  LA+ Y ++ V V I +  +    I    ++V  S++   +  +L   G 
Sbjct: 445 FSATMPPAVERLARKYLRNPVVVTIGTAGKATDLITQHVIMVKGSEKMPKLQKLLDELGD 504

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K AIVF +T+ S     K L +  ++V  L G  SQ++R  +L+  R  R  V +ATDVA
Sbjct: 505 KTAIVFINTKKSTDTLAKGLDKAGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 564

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFR 361
            RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   +  +        +++  
Sbjct: 565 GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLI 624

Query: 362 EANVSVVWE 370
           ++N  V  E
Sbjct: 625 QSNSPVPPE 633


>gi|162605920|ref|XP_001713475.1| eukaryotic initiation factor 4a [Guillardia theta]
 gi|6690142|gb|AAF24007.1|AF083031_4 eukaryotic initiation factor 4a [Guillardia theta]
          Length = 385

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 184/373 (49%), Gaps = 9/373 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE   + + + + +   G+   + +Q+  + P + ++DV+  +Q+G+GKT  F +   
Sbjct: 12  ETFEEMELKRELLKGIYGYGFERPSFIQQRGILPIINKEDVVAQSQSGTGKTATFVIGTL 71

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L    ++         L + PTRELA QV +  + +     +   +  GG  +    +
Sbjct: 72  QNLSNIENKIKN------LVLVPTRELATQVEQVFKSIGFFMKIKTQLLTGGDRIQITNK 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +      IV+GTPG++ D +  K   I +L+ +V+DEADEM   GF+  +  I+   P +
Sbjct: 126 EQYKKPQIVIGTPGKVLDSLSKKTYYIENLEYLVVDEADEMFSRGFKIQVLKIIKYLPLE 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNI 238
            ++ +FSAT+      + + +  + V++ +  +      I    + +     + ++++ I
Sbjct: 186 AKIALFSATMPIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIEI 245

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   +I++ +TR        ++ ++ F V  L GE+ Q +RS+ ++  R G  R+ 
Sbjct: 246 YSKIKITQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFRIL 305

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I+TD+ +RGID+  + LVI+ +L    E  +HR GR+GR GRKG+++  + ++       
Sbjct: 306 ISTDLVSRGIDIQQVCLVINYDLPKLKEVYIHRIGRSGRFGRKGVAINFLSRSDVSILRS 365

Query: 359 LFREANVSVVWEP 371
           +    N ++   P
Sbjct: 366 IEGYYNTNIEEMP 378


>gi|88859266|ref|ZP_01133906.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
 gi|88818283|gb|EAR28098.1| ATP-dependent RNA helicase, DEAD box family protein
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 101/380 (26%), Positives = 180/380 (47%), Gaps = 7/380 (1%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE   I + +   L+ +G  + T VQ+  +   L  +D+ V ++TGSGKT+AF +    
Sbjct: 11  LFEEFGIDKRLLTQLAHQGITSPTDVQQQAIPVALSGQDLFVQSKTGSGKTLAFLVPALQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            ++ +         P A+ I PTRELA QV  +L  L A + +V    +GG + + + + 
Sbjct: 71  RIIKQKPLSKRD--PRAVIITPTRELANQVFAQLRLLVAGSNIVATKILGGDNFNDQIKA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+   H++V TPGRL DHI+ K   ++ L+ +++DEAD ++DLGF+ +I+ I   +  + 
Sbjct: 129 LKKDPHVIVATPGRLADHIKQKSCFLAGLELLIIDEADRIMDLGFKAEIDLINTEANHRL 188

Query: 181 RM---LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R       +   S          +         S                L  ++  + +
Sbjct: 189 RQTLLFSATLEHSQIDALSRNLLKSPKKVTLSQSNEEHTDITQNMFFADNLLHKEALLAH 248

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L        IVF +TR    R +++++       AL+G++ Q +R + +     G+++V
Sbjct: 249 FLSKPNIGQCIVFTATREDTYRLSELISGKGLSSQALAGDMPQSKRLSIMDSFSRGQSQV 308

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I TD+A+RG+DL ++  VI+ +L    E  +HR GRTGRAG KG ++  +         
Sbjct: 309 LITTDIASRGLDLLNVTHVINFDLPKQAEEYVHRIGRTGRAGFKGHAISFVGPKDWDSFV 368

Query: 358 RLFREANVSVVWEPAPSVEA 377
            +       + +     + A
Sbjct: 369 AIKAFLQHEITFLTVDGLAA 388


>gi|237653132|ref|YP_002889446.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
 gi|237624379|gb|ACR01069.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
          Length = 487

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 135/405 (33%), Positives = 208/405 (51%), Gaps = 14/405 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P    + + L +  Y  +T +Q A L   L   D++  A+TGSGKT AF L L + 
Sbjct: 32  FDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLLAR 91

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L           A  A+ + PTRELA QV +E+  L      +  + + G +  R +RD 
Sbjct: 92  LDV------RKLAVQAMVLCPTRELADQVTQEIRRLARFEANIKVLALCGGTPMRPQRDS 145

Query: 122 -QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            ++GAH+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI F+    P +R
Sbjct: 146 LEHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSER 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA  + ++   V +  ++        R   VA   R  A+  +LR
Sbjct: 206 QTLLFSATYPEGIARLAARFLREPQEVKLLEQHAHGKI-RQRFYEVAHPARLEAVATLLR 264

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC+TR       ++L    F  +AL+GE+ Q+ER   L    +    V +A
Sbjct: 265 HFRPVSTLAFCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVLVA 324

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE VI+ +++ +PE  +HR GRTGR   +G ++ +     +RR   + 
Sbjct: 325 TDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVASIA 384

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       W    +++ + E DA   LQ P+    I G  K  + 
Sbjct: 385 QRMGFEPEWH---ALDELVE-DANEPLQAPMTTLLILGGRKDKIR 425


>gi|91786555|ref|YP_547507.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
 gi|91695780|gb|ABE42609.1| ATP-dependent RNA helicase DbpA [Polaromonas sp. JS666]
          Length = 468

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 131/404 (32%), Positives = 210/404 (51%), Gaps = 14/404 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L + GY+++T +Q A L   L  KD++  A+TGSGKT AFGLAL + L    
Sbjct: 13  LPAHVLANLQQLGYLSMTPIQAASLPVALLGKDLIAQAKTGSGKTAAFGLALLANLN--- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +   A  A+ + PTRELA QV  E+  L   +  + V    GGV +  +   LQNGA
Sbjct: 70  ---ARRFAVQAMVLCPTRELADQVATEIRRLARAEENIKVVTLCGGVPLRNQVSSLQNGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+  + L++  L  +VLDEAD MLD+GF +DI  +    P +R+ L+F
Sbjct: 127 HIVVGTPGRIMDHLERETLDVDALNTLVLDEADRMLDMGFYNDIATVAKQCPDERQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV---ALSDRDNAIVNILRYH 242
           SAT    I  L++ + K+   + + +++ +         +        R NA+  +L ++
Sbjct: 187 SATYPEGIAKLSQQFMKEPQTITVQAQHEKSKIRQRWYEVPESDRDEARLNAVALLLNHY 246

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + + FC+T++        L    F  +AL GEL Q+ER   L    +    V +ATD
Sbjct: 247 RPASTLAFCNTKSQCRALVAYLKNKGFSALALYGELEQRERDQVLVQFSNRSCSVLVATD 306

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARG+D+  LE+VI+ +++ + E  +HR GRTGRA  +G ++ +   +      ++ + 
Sbjct: 307 VAARGLDISQLEMVINVDVTPDAEVHIHRIGRTGRADEEGWAISLASMDEMGSVGKIEQL 366

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
            N    W     +  +     + +L  P+    I G  K+ +  
Sbjct: 367 QNAESEWHK---LTELTPTSTEPLL-PPMVTLQIVGGRKEKIRA 406



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV----D 519
                  +  G K+K  A  ++  L   +G  R+ +G I V    T+V V          
Sbjct: 389 PPMVTLQIVGGRKEKIRAGDVLGALTGEAGFTREQVGKINVNEFSTYVAVDRAIASQAQQ 448

Query: 520 LLRRTVKLDKGIQLKYLG 537
            L       K ++++++ 
Sbjct: 449 KLASGRVKGKSVKVRFMD 466


>gi|313890658|ref|ZP_07824285.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120969|gb|EFR44081.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 447

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 112/460 (24%), Positives = 196/460 (42%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I +AL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +   L  +
Sbjct: 7   NFKDYIQKALEEINFREPTEVQKKLIPVVNSGRDLVGESKTGSGKTHTFLLPIFEKLDED 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           +           L  AP+RELA Q+    + + + +   + +         + +  +   
Sbjct: 67  SRDV------QVLITAPSRELATQIFEAAKQIASHSQKEIRLVNYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIVVGTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S  K  ++
Sbjct: 121 SQPHIVVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIAASLAKNVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y ++ +   I +E     +ID   V     D++  I+ IL   
Sbjct: 181 LVFSATIPQKLQPFLKKYLRNPLIEQIRTETVIADNIDNWLVSTKGRDKNAHILEILTNI 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYLAMIFVNTKERADELHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLEFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFIHRVGRTGRNGLSGTAITLYQPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +S V                ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 MGISFVP---------------KMLKNGEFRDTYDRDRRYNREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I  V     R   R +S+A          
Sbjct: 405 KKKVKPGYKKKIQWVVDEKRRKERRAESKARGRAERKAKK 444


>gi|307331285|ref|ZP_07610408.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883097|gb|EFN14160.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 565

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 133/451 (29%), Positives = 214/451 (47%), Gaps = 18/451 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I   L++ G      +Q A +   +  KD+L   +TGSGKT++FGL L +
Sbjct: 64  TFADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLT 123

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 124 TL---AGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDILGLKLKVVCGGTSMGNQIYA 180

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P+  
Sbjct: 181 LERGVDILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGG 240

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I +L K Y  D V   + S     + + +  ++V    +D A V    
Sbjct: 241 QRLLFSATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV--KPKDKAPVTAAI 298

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 299 AARKGRTIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVA 358

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL 
Sbjct: 359 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLM 418

Query: 361 REANVSVVWEPA----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            +A V              E + +    R L +          E        A+ + + +
Sbjct: 419 EDAGVDASRHIVGGGGAFDEDVAQITGARSLTEV-------QAEAASNAAKQAEREAQDL 471

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           +    R+ R  +   EE   +S  + R+R  
Sbjct: 472 SRELERVQRRAVELREEADRLSARAARERGE 502


>gi|325001026|ref|ZP_08122138.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
          Length = 416

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 128/368 (34%), Positives = 197/368 (53%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + ++L+ +G+     VQ A L   L  +D+L   QTGSGKT+AFGLAL
Sbjct: 3   MPSFAELGLPEALVKSLAAQGFTAPFPVQAATLPDTLAGRDLLGRGQTGSGKTLAFGLAL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +  R   ++APL L + PTRELA QV   L  L A   + V   +GG+S++++ 
Sbjct: 63  LARIAGDRAR---STAPLGLVLVPTRELAGQVVDVLTPLAAAVNLRVTAVVGGLSMNKQV 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L+ G  ++V TPGRL DH++    ++S +    LDEAD M D+GF   +  ILD +P 
Sbjct: 120 AELRRGIDLLVATPGRLTDHLQQGTCDLSEVTITALDEADRMADMGFLPQVRGILDRTPS 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   + TL + +  D V  ++A        +++  ++V   DR    V  
Sbjct: 180 DGQRLLFSATLDGEVDTLVRRHLTDPVTRSVAPPTASVDTMEHHVLVVGKDDRSR--VIA 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+    R  +VL         L G  SQ +R+ AL   R G   V 
Sbjct: 238 EIAAREGRTIMFVRTKHGADRMVRVLRRQGVAAGPLHGGRSQNQRNRALDEFRTGEVPVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATDVAARGI + D+ LV+H +  ++P+  LHR+GRT RAG +G+ V +     +   + 
Sbjct: 298 IATDVAARGIHIDDVGLVVHVDPPADPKAYLHRAGRTARAGEEGVVVTLSAPEQRAEVDL 357

Query: 359 LFREANVS 366
           L ++A V 
Sbjct: 358 LTKQAGVR 365


>gi|3342758|gb|AAC27683.1| helicase pitchoune [Drosophila melanogaster]
          Length = 663

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 115/485 (23%), Positives = 213/485 (43%), Gaps = 18/485 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 177 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 234

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 235 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 294

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 295 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 354

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 355 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 414

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 415 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 474

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P ++ ++  +   +  +++HR GRT R  G  G ++ ++         R  +
Sbjct: 475 VAARGLDIPQVDWIVQYDPPGDQASIIHRVGRTARGSGTSGHALLLMRPEELGFL-RYLK 533

Query: 362 EANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA-- 417
            A V +         +  I +   ++++    FL+    +  K        H  ++I   
Sbjct: 534 AAKVPLNEFEFSWQKIADI-QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNV 592

Query: 418 ----AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS-SWFSLS 472
                  +      L  P     V+  SG DR  D            +    S       
Sbjct: 593 NTLDLQAVAKSFGFLVPPVVDLKVARPSGSDRKSDVGGGGFGFYKKMNEGSASKQRHFKQ 652

Query: 473 VGSKQ 477
           V   Q
Sbjct: 653 VNRDQ 657


>gi|70663484|emb|CAJ15141.1| PL10b protein [Platynereis dumerilii]
          Length = 816

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 196/391 (50%), Gaps = 22/391 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST---- 61
            + +++   +    Y   T VQ+  +    +++D++  AQTGSGKT +F + + S     
Sbjct: 340 ELGEIVDSNIVLSKYTKPTPVQKHAMPIIKKKRDLMACAQTGSGKTASFLVPVLSQMFLD 399

Query: 62  -----LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
                +  +N+R +    P+AL +APTRELA Q+  E      ++ V   V  GG  +  
Sbjct: 400 GQPEFIREQNNRNNRKQYPIALVLAPTRELASQIYEEARKFAYRSHVRPCVVYGGADIGA 459

Query: 117 ERRD-LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RD  + G H++V TPGRL D +    + + H++ VVLDEAD MLD+GF   I  I++ 
Sbjct: 460 QMRDLPERGCHLLVATPGRLVDMLERGKIGLDHIRFVVLDEADRMLDMGFEPQIRRIVEK 519

Query: 176 SPKKRRML----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                       MFSAT    I  LA+++  + + + +        +I  + V V   D+
Sbjct: 520 DTMPPTGDRRTLMFSATFPKEIQILARDFLHNYIFLAVGRVGSTSENITQKVVWVEEPDK 579

Query: 232 DNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
            + ++++L   G  +  +VF  T+         L    +    + G+ SQ+ER  AL+  
Sbjct: 580 RSFLLDLLNASGPDSLTLVFVETKKGADALDNFLYNEGYPSACIHGDRSQKEREEALRNF 639

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R G+  V +AT VAARG+D+P+++ VI+ +L S+ E  +HR GRTGR G  G++      
Sbjct: 640 RSGKTPVLVATAVAARGLDIPNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFND 699

Query: 349 -PQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             +N+ R    L  EA   V     P +E+I
Sbjct: 700 KNKNIVRDMVDLLIEAKQEVP----PWIESI 726


>gi|146419343|ref|XP_001485634.1| hypothetical protein PGUG_01305 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 862

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 16/404 (3%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   L E+ GY   + +Q   L   +  +D++  A TGSGKT+AF + L   ++ +
Sbjct: 273 LPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIM-D 331

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ + + PTRELA+Q+ +EL        + V  C GG  +  +  DL+ G 
Sbjct: 332 QPPLKSGDGPIGVILTPTRELALQIQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGT 391

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D +   G  +++L+    +VLDEAD M D+GF   +  +L      ++M
Sbjct: 392 EIIVGTPGRVIDLLAANGGRVTNLRRTTFLVLDEADRMFDMGFEPQVNKVLSQIRPDKQM 451

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV------ 236
           ++FSAT    + +LA+++  D + +     +    +I  R VL+  S   +         
Sbjct: 452 VLFSATFPKKLESLARSFLVDPIEIVAGGISVVAPEITQRVVLIDDSGDISQKKLQALLK 511

Query: 237 ---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
                         ++F   + +       L  +    + + G   Q +R +A++   D 
Sbjct: 512 IVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQILCIVIHGGKDQVDRKHAIKQFSDK 571

Query: 294 RA-RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              RV IAT +AARG+D+  L LVI+ +  S+ E+ +HR GRTGRAG  G +V ++  + 
Sbjct: 572 NGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTAVTLVLSSQ 631

Query: 353 QRRAERLFREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDS 395
           +R    L R   +S   +  P+ +++I ++  +++       +S
Sbjct: 632 EREIRDLVRAMKMSGKVDDIPAELQSIADKFLKKVKSGEEKFNS 675


>gi|221107105|ref|XP_002164714.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 367

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 162/339 (47%), Gaps = 9/339 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  +   L  +D++  A+ G+GKT A+ + L   
Sbjct: 35  FEDYCLKRELLMGIFEKGFEKPSPIQEQSIPIALAGRDIMARAKNGTGKTGAYLIPLLER 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + +  D         AL + PTRELA+Q  +  + L    G  V V +GG S+  +   L
Sbjct: 95  VDSTKDYI------QALVLVPTRELALQTSQICKDLSNHLGTKVMVTLGGTSLKDDIMRL 148

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               H+VV TPGR+ D ++    ++S  + +V+DEAD++L + F+  ++ ++   P+ R+
Sbjct: 149 YQTVHVVVATPGRILDLMKKGVADMSKCQILVMDEADKLLSMDFKKLLDSLIQMLPENRQ 208

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L++SAT   ++      Y      +N+  E             V    + + +  +   
Sbjct: 209 VLLYSATFPYSVKEFKDKYLSKPYEINLMDELTLKGI-TQYYAFVEEKQKVHCLNTLFSK 267

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    + + +  +    +   + Q  R+      R G+ R  + +
Sbjct: 268 LQVNQSIIFCNSVQRVELLARKITQLGYSCFYIHSRMQQSHRNRVFHDFRSGQCRNLVCS 327

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           D+  RGID+  + +VI+ +   N E  LHR GR+GR G 
Sbjct: 328 DLFTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGH 366


>gi|157875861|ref|XP_001686302.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 803

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 123/583 (21%), Positives = 233/583 (39%), Gaps = 42/583 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F N+ + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + + +
Sbjct: 24  FQSF-NLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL A     +       L ++PTREL++Q+ R    L     +  A  +GG S+ ++   
Sbjct: 83  TLKAH----AKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFEL 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   +VV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 139 LASNPDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESC 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--------D 232
           +  +FSAT+   +         + V + + SE +    +   A LV   ++         
Sbjct: 199 QRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLK 258

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +        +  A++F  ++  V     +L  +     A+ G++ Q+ R  A++    
Sbjct: 259 RVLHVGEAAANSAQALIFSESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 319 RETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFED 378

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDA--QRILQDPLFLDSIQGDEKKMVDVLLAK 410
                 L +     +   P P        D    R+ ++ + L+ +   ++   + +  +
Sbjct: 379 FPYYVDLMQFIGRPLQSAPVPGDLLFTPDDGCYGRLPEEDIQLE-LDFLKRLHENDVEVR 437

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG-GSRDNFKGSSWF 469
           +    +     + +R       E    +        R       +   GS         F
Sbjct: 438 NMARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLERLGSTRVRADEVRF 497

Query: 470 SLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV-SADGVDLLRRTVKLD 528
            L     ++ + + L                 + +       E+   +    L R+   +
Sbjct: 498 DL-----KRFKPKELF----------------LEIGSKEKLFEIRPPETAQSLARSSNAE 536

Query: 529 KGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGAS 571
            G +     G        K   F  K  Q    +R +  +  S
Sbjct: 537 GGAK---KVGAASTPPPAKQLSFAEKMLQRAQERRKREHEAGS 576


>gi|332088088|gb|EGI93213.1| ATP-dependent RNA helicase srmB [Shigella boydii 5216-82]
          Length = 442

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 122/409 (29%), Positives = 190/409 (46%), Gaps = 8/409 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEAPRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + E  P   A  E+   +  +  L   + +   K+   V     D + I
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKPRVKKRHRDTKNI 424


>gi|90416956|ref|ZP_01224885.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
 gi|90331303|gb|EAS46547.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2207]
          Length = 584

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 107/366 (29%), Positives = 186/366 (50%), Gaps = 4/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   +   G+   T +Q A L   LR  D++  AQTG+GKT AF +++ S LL  
Sbjct: 62  DLPLPLLRGIQTAGFQYCTPIQGASLPHTLRGHDMVGKAQTGTGKTAAFLVSIISDLLKH 121

Query: 66  NDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQN 123
                       AL +APTRELAVQ+G + E L   T +    +  G     +  +  + 
Sbjct: 122 PVEDERYIGEARALILAPTRELAVQIGEDAEQLVQHTDLKVHTLVGGMDYAKQLHKIKRA 181

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+VGTPGRL D    K +++  ++ +V+DEAD MLD+GF   +  ++ ++P K    
Sbjct: 182 HCDILVGTPGRLLDFASNKDVHLDQVEVLVIDEADRMLDMGFIPQVRRLVRATPPKEDRQ 241

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  L++ +    V++ +  E      ++ +  +   +++   + NIL+ 
Sbjct: 242 TLLFSATFTDDVMRLSEQWTDKPVKLEMEPERVATDTVEQKIFITTANEKFALLQNILKS 301

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              K+ +VF + R       + L +  F+V  ++G++ Q  R   L+  + G  +V +AT
Sbjct: 302 DDVKSVMVFANRRDICRTLFERLKKQGFKVGLIAGDVPQARRMKTLEGFKSGALKVMVAT 361

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L   PE+ +HR GRTGRAG  G+S+    ++     E + +
Sbjct: 362 DVAGRGIHVNGVSHVINFTLPEEPEDYVHRIGRTGRAGETGISISFACEDDAFLLEPIEK 421

Query: 362 EANVSV 367
             ++ +
Sbjct: 422 LLDMKL 427


>gi|294665093|ref|ZP_06730397.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605135|gb|EFF48482.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 570

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|294626526|ref|ZP_06705125.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599216|gb|EFF43354.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 570

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|319426890|gb|ADV54964.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
          Length = 427

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 119/402 (29%), Positives = 197/402 (49%), Gaps = 4/402 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVDAKTED 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L++GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRSGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELTQVLDALPVKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      + +   + SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNNPLEYQLQSEQESTI--HQRVITVNRPMKTALLAHLIKEHLWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGITAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           V E     EA  +  A+ + Q           +KK   +  A
Sbjct: 377 VREQIVGFEADDDMPAELLEQAKPVAKPEGTGKKKRKQLPQA 418


>gi|21244553|ref|NP_644135.1| ATP-dependent RNA helicase RhlB [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|32363346|sp|Q8PFZ3|RHLB_XANAC RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21110227|gb|AAM38671.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 571

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 189/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|327305867|ref|XP_003237625.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
 gi|326460623|gb|EGD86076.1| DEAD box helicase [Trichophyton rubrum CBS 118892]
          Length = 594

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 169/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  ++   +   GY+  T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 IKSFEDAGLHPIMLNNIKLCGYLVPTPVQAYCIPAVLTGHDLIAVAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L + PTRELA Q+  E   L  ++ 
Sbjct: 186 LSKLMGKAKKLAAPRPDLGNGFNESLDAVRAEPLVLIVVPTRELATQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  I++ TPGRL D +    + ++  ++  ++DEADE+L
Sbjct: 246 LRPCVIYGGGPSRDQRIELQKGCDILIATPGRLIDFMEKPNILSLCRVRYTIIDEADELL 305

Query: 162 DLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +         ++     R M+  +           K    D VR+ I      H
Sbjct: 306 KSDWEVEFTKILAGGDVNEDADHRYMMFSATFNKGCRQVARKFLANDYVRIRIGRVGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + V    + +   + ++L        IVF + +         L        ++  
Sbjct: 366 LNVTQQLVWAEENMKKKCLYDLLMAMPPSRTIVFVNNKTQADLIDDFLFNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  +  ++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR 
Sbjct: 426 DRTQREREDAIRAFKTAKSPILIATAVSARGLDIKNVMHVVNYDLPSVNHGGIDEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRT R G  G++           A  L +
Sbjct: 486 GRTARIGNPGLATSFYNDKNSDIASDLVK 514


>gi|256789946|ref|ZP_05528377.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289773828|ref|ZP_06533206.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
 gi|289704027|gb|EFD71456.1| DEAD-box RNA-helicase [Streptomyces lividans TK24]
          Length = 439

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 198/371 (53%), Gaps = 5/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+ E ++  G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL +      
Sbjct: 14  LPPVLVETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLA---GTA 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL +  TRELA QV   L       GV +   +GG+S++R+ + L++GA 
Sbjct: 71  GRRAEPKRPLALVLVSTRELAQQVSDALAPYARALGVRLTTVVGGLSINRQTQALRDGAE 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  +  +++ ++  VLDEAD+M DLGF   +  ILD  P   + L+FS
Sbjct: 131 VVVATPGRLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L +++    V V++   +   S +++  + V  +D+               
Sbjct: 191 ATLDGDVDQLVRDHLHAPVPVSVDPASASVSTMEHHVLTVHPADKYATATE--IAARDGR 248

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+A V RFT+ L        AL    SQ +R++ L    +G   V +AT+VAAR
Sbjct: 249 VLMFLDTKAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAAR 308

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + DL+LV++ +  ++ ++ LHR GRT RAGR G  V ++  + +R   R+  EA + 
Sbjct: 309 GIHVDDLDLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGIR 368

Query: 367 VVWEPAPSVEA 377
               P  S E 
Sbjct: 369 PTVTPVRSGEQ 379


>gi|152988314|ref|YP_001347045.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
 gi|150963472|gb|ABR85497.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
          Length = 441

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 118/379 (31%), Positives = 188/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L  +D+ V+AQTGSGKT AF      
Sbjct: 1   MFSQFPLHERLLKALDSLSFSEPTPVQAAAIPQALEGRDLRVTAQTGSGKTAAFL---LP 57

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 58  LLNRLLAEEKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IV+GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIVIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 238 LGNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I  N       
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSS 357

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R             ++A
Sbjct: 358 VERYLKQHFERRNIKELKA 376


>gi|289619838|emb|CBI54121.1| unnamed protein product [Sordaria macrospora]
          Length = 825

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 114/486 (23%), Positives = 207/486 (42%), Gaps = 20/486 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  +     L    +  +T VQ+A +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 58  IKNFTDLPLCEPTASGLRASHFEIMTDVQKAAIPLALKGQDILGAARTGSGKTLAFLVPV 117

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R++      AL I+PTRELAVQ+   L  +         + IGG S+  E 
Sbjct: 118 LEKLY--RARWTELDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEA 175

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G ++ +L+ +VLDEAD ++D+GF+  ++ +++  PK
Sbjct: 176 ERLSRMNILVCTPGRMLQHLDQTAGFDVDNLQILVLDEADRIMDMGFQQAVDALVEHLPK 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT S  ++ LA+   KD   V++     +    ++    ++  L ++ + + 
Sbjct: 236 SRQTLLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVNLQQHYIVTPLPEKLDTLW 295

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
             LR +     IVF S+   V    +        +  L     Q++ +           +
Sbjct: 296 GFLRTNLKSKIIVFLSSGKQVRFVYESFKRMQPGIPLLHLHGRQKQIARLEITNRFTSAK 355

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI A+   + +  +HR GRT R   KG +V  + P   +
Sbjct: 356 YSCLFATDVVARGVDFPAVDWVIQADCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEE 415

Query: 354 RRAERLFRE----ANVSVVWEPAPSVE-AIRERDAQ----RILQDPLFLDSIQGDEKKMV 404
              +RL ++    A V V      S++  ++ ++ Q    + L    F+  ++    +  
Sbjct: 416 GFIKRLEQKKVHVAKVHVKENKKKSIKHELQSQNFQSPDLKYLGQKAFVSYVRSIYLQKD 475

Query: 405 DV--LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                  K D +  A+         +   +      L +            +   G    
Sbjct: 476 KEVFKFDKLDLDGFASSLGLPGTPQIRYQKGEDIKKLKNASRAAMSSGSDTEGSDGEIRK 535

Query: 463 FKGSSW 468
            K    
Sbjct: 536 KKKEVR 541


>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
 gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
           roseum DSM 43021]
          Length = 571

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 120/376 (31%), Positives = 189/376 (50%), Gaps = 9/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   LS +G  +   +Q A +   L   DVL   QTGSGKT+AFGL + + +    
Sbjct: 27  LPKPLVTGLSRQGIDSPFPIQSATIPDILAGSDVLGRGQTGSGKTLAFGLPMMARIAGSK 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      PLA+ + PTRELA+QV   LE L     + +   +GG+S+ R+   L+ G  
Sbjct: 87  ARPGR---PLAVVLVPTRELAMQVTDALEPLGRGLSLRMKTVVGGMSMGRQIEALRRGVE 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I+     +  ++  +LDEAD M DLGF   +  IL  +P   + L+FS
Sbjct: 144 VVVATPGRLTDLIQQGECTLDEVQVTILDEADHMCDLGFFPVVSAILQQTPADSQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  ++A        +++  + V   D+    V     +    
Sbjct: 204 ATLDGDVDKLVRRFLTDPVTHSMAPVASSVDTMEHHVLEVHRDDKFP--VTAEIANREGR 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+  V R  K LA+   +   L G   Q +R+  L   ++G   V + TDVAAR
Sbjct: 262 TIIFVRTQHGVDRLCKQLAQVGIKAGGLHGGKRQNQRTRILAEFKEGAINVLVCTDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + ++ LV+H +   + ++ LHR GRT RAG KG  + ++  N +R  + + R A + 
Sbjct: 322 GIHVDNISLVLHVDPPQDHKSYLHRGGRTARAGEKGTVMTLVLPNERRSTDAMTRRAGIK 381

Query: 367 VVWEPA----PSVEAI 378
                A    P +E +
Sbjct: 382 PFRLKATPGHPRLEEV 397


>gi|221195199|ref|ZP_03568255.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
 gi|221185102|gb|EEE17493.1| dead/deah box helicase [Atopobium rimae ATCC 49626]
          Length = 457

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 111/399 (27%), Positives = 176/399 (44%), Gaps = 40/399 (10%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +   + I   +   G+   T +Q A +   L  KDV+ SAQTG+GKT AF     
Sbjct: 3   TTFAELGLNEHILTGVETLGFNTPTPIQAAAIPAVLAGKDVVASAQTGTGKTAAFVFPAL 62

Query: 60  STLL------------------------------------AENDRFSPASAPLALAIAPT 83
             +                                         R +    P AL + PT
Sbjct: 63  QVIDTGFGDEKTDRPEVQCQPQDGQQQSSQQQESQRRRQRGGKRRRNRTRDPQALIVTPT 122

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+ R    +   TG    +  GG  + R+   +Q G  ++V TPGRL D I    
Sbjct: 123 RELATQIERVATTICKSTGQRAVIITGGAKLKRQISAVQAGCDLLVATPGRLLDLIEHHQ 182

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           +N+ ++K  +LDEAD MLD+GF   +  I+D+ P KR+ L+FSAT+ P+I +   N   D
Sbjct: 183 VNLKNIKVFILDEADRMLDMGFWPSVRRIMDTLPPKRQTLLFSATLPPSIISTIDNMLHD 242

Query: 204 AVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGAKNAIVFCSTRASVSRFT 261
              + IA   +    ++     V    +      +        +  +VFC T+  V    
Sbjct: 243 PTMIEIARTGQTADTVEEHLCPVVQGQKVELLESLIRSFRPAPERILVFCRTKLRVDSVY 302

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L    F+V  +  +  Q  R+ AL   R+G  ++ +ATDV +RGID+  ++ V++ ++
Sbjct: 303 AALNNAGFKVDVMHADRPQGARTRALTKFRNGTIQILVATDVMSRGIDVQGIDAVVNFDV 362

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
             +PE+ +HR GRTGRAG  G +   +  +       + 
Sbjct: 363 PLDPEDYVHRIGRTGRAGSAGQAFTFMAPDEIAPLREIE 401


>gi|152965134|ref|YP_001360918.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
 gi|151359651|gb|ABS02654.1| DEAD/DEAH box helicase domain protein [Kineococcus radiotolerans
           SRS30216]
          Length = 565

 Score =  174 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 116/366 (31%), Positives = 179/366 (48%), Gaps = 7/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I ++L+  G      +Q   L   L   D++  A+TG+GKT+ FG+ L        
Sbjct: 35  VDPRIAQSLAGAGITTPFPIQSMTLPVALSGHDIIGQAKTGTGKTLGFGVPLLQRTAVPG 94

Query: 67  DR----FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           D           P AL I PTRELA QV  +L          +    GG +   +   L 
Sbjct: 95  DPAYDALPNPGKPQALVIVPTRELATQVAGDLTTASRNYPARILTVYGGRAYEPQIDALT 154

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGRL D  + + L++S++K VVLDEADEMLDLGF  D+E ++  +   R+ 
Sbjct: 155 KGVDVVVGTPGRLLDLAQQRHLDLSNVKCVVLDEADEMLDLGFLPDVERLIAQTDPARQT 214

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYRAVLVALSDRDNAIVNIL 239
           ++FSAT+   +  +A++Y      +         +    I   A      D+   +  +L
Sbjct: 215 MLFSATMPGPVVAMARSYMSRPTHIRAVDPTDDGATVAAITQFAYRTHALDKVEVLARML 274

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +  G    IVF  T+ + +   + L E  F   ++ G+L Q  R  AL+  R G+  V +
Sbjct: 275 QATGRGLTIVFSRTKRTAASVAEQLTERGFAAASIHGDLGQGAREQALRAFRHGKVDVLV 334

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGID+ D+  VI+ +   + +  LHR GRTGRAG  G++V  +  +   R   +
Sbjct: 335 ATDVAARGIDVEDVTHVINYQCPEDEKTYLHRIGRTGRAGNTGVAVTFVDWDELPRWSLI 394

Query: 360 FREANV 365
            +   +
Sbjct: 395 DKALGL 400


>gi|326914387|ref|XP_003203507.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like, partial
           [Meleagris gallopavo]
          Length = 658

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 122/496 (24%), Positives = 212/496 (42%), Gaps = 22/496 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F + P  +   + L E  Y  +T +Q   +   L+ KDVL +A+TGSGKT+AF +  
Sbjct: 72  IQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPA 131

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++ A     L I+PTRELA Q  + L  +         + IGG  +  E 
Sbjct: 132 LELLY--RLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEES 189

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + +   ++      L           S L+ ++LDEAD +LD+GF D +  I+++ PK
Sbjct: 190 ERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 249

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +    D   ++  L  + N + 
Sbjct: 250 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLY 309

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF ++   V    +V  +      V+AL G+  Q +R          +
Sbjct: 310 SFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKK 369

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  VI  +   +    +HR GRT R    G ++  ++P   +
Sbjct: 370 AAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 429

Query: 354 RRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              E+L  R+  V+ +      +  I++R    + QD    +  Q      +  +    +
Sbjct: 430 GMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKN 489

Query: 413 PE------------KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
            E             ++ G     R       +    +  +  +R             S 
Sbjct: 490 KEVFDVFKLPLAEYALSLGLAMAPRVRFLQKVQKQLSAKETSEERNPLKETEQNKNTVSP 549

Query: 461 DNFKGSSWFSLSVGSK 476
            N +G     ++ G K
Sbjct: 550 PNKEGMEERRINSGGK 565


>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
 gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
          Length = 424

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 195/361 (54%), Gaps = 8/361 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +AL ++G    T +Q+A +    + KD++  ++TG+GKT+A+ L L   +  +   
Sbjct: 11  EPLAQALYQQGIRFPTVIQQASIPAIFKGKDIIGRSETGTGKTLAYLLPLVQRVDVKKG- 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                    L + PTRELA Q+   L          VA  IGG ++  + + L+   HI+
Sbjct: 70  -----GTQVLIMTPTRELAKQIFDVLRPFAILMEADVADIIGGRTIENQIQKLKREPHII 124

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           +GTPGRL DHIR + L++S +K VVLDEAD+ML  GFR+DI+ ++D +PKKR++L+FSAT
Sbjct: 125 IGTPGRLLDHIRRRSLDLSGVKTVVLDEADQMLAAGFREDIDALVDETPKKRQVLLFSAT 184

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P    LA  Y K AV  ++A +    +  + R      + + + +V  L+      A+
Sbjct: 185 MPPEAKKLAHKYMKSAVVADVAEKAVASTV-EQRVYETVKTHKFSLLVRHLKEINPYMAV 243

Query: 249 VFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           VFC+TR         L E    VV  + G +SQ +R+  ++     R +V +A+D+AARG
Sbjct: 244 VFCNTREGAHELAGRLQEETDLVVDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARG 303

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +  V + ++  N E  +HR GRTGRAG +G+S+            +L +     +
Sbjct: 304 LDVEGITHVFNYDIPRNLEYYIHRIGRTGRAGTQGVSITYATPEDILLLRKLEKAIKEII 363

Query: 368 V 368
            
Sbjct: 364 T 364


>gi|197100857|ref|NP_001126280.1| ATP-dependent RNA helicase DDX18 [Pongo abelii]
 gi|55730937|emb|CAH92187.1| hypothetical protein [Pongo abelii]
          Length = 670

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/427 (25%), Positives = 210/427 (49%), Gaps = 17/427 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     +A+ E G+ N+T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 177 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP 236

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               ++    RF P +    L ++PTRELA+Q    L+ L         + +GG +   E
Sbjct: 237 AVELIV--KLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAE 294

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL D ++        +L+ +V+DEAD +LD+GF ++++ I+   
Sbjct: 295 AQKLANGINIIVATPGRLLDDMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 354

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           P +R+ ++FSAT +  +  LA+   K         +++ ++ +D      V+     R  
Sbjct: 355 PTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFL 414

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 415 LLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNA 474

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQN 351
            +   + T VAARG+D+P+++ ++  +   +P+  +HR GRT R   GR G ++ ++   
Sbjct: 475 DSGTLLCTGVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGR-GHALLILRPE 533

Query: 352 MQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
                 R  +++ V +         +  I+ +  +++++   FL     +  K       
Sbjct: 534 ELGFL-RYLKQSKVPLSEFDFSWSKISDIQSQ-LEKLIEKNYFLHKSAQEAYKSYIRAYD 591

Query: 410 KHDPEKI 416
            H  ++I
Sbjct: 592 SHSLKQI 598


>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
          Length = 834

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 210/473 (44%), Gaps = 25/473 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 311 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 370

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 371 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 427

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 428 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 487

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 488 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYL 547

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       I+F   +    R   +      +   L G +SQ++R  +++  RDG+ 
Sbjct: 548 MVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKV 607

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 608 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667

Query: 356 AERLF---REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
            +      R     +V  P  S EA +            +   ++  ++++ ++L  + +
Sbjct: 668 VKAAVKTGRAQGAKIVSRPIDSAEADK------------WAAKVEEMQEEVKEILKEEKE 715

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +++A   + + R G         +     R  F  +    +    S +   G
Sbjct: 716 EKQLAQAEMEVTR-GSNLINHEKEIMSRPKRTWFETEKEKLQAKQRSLEELNG 767


>gi|323185489|gb|EFZ70850.1| ATP-independent RNA helicase dbpA [Escherichia coli 1357]
          Length = 437

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 192/368 (52%), Gaps = 8/368 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      A
Sbjct: 1   MGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
           L + PTRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL 
Sbjct: 55  LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRYAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +             +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ EL+ +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  
Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 353

Query: 377 AIRERDAQ 384
           +I   +A+
Sbjct: 354 SILPLEAE 361



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 300 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 359

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 360 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 419

Query: 524 TVKLDK 529
            ++  K
Sbjct: 420 QLQGGK 425


>gi|291389065|ref|XP_002711079.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Oryctolagus
           cuniculus]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|281204115|gb|EFA78311.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1026

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 114/398 (28%), Positives = 191/398 (47%), Gaps = 23/398 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++I  P++   A     +   + +Q           D++  A TGSGKT+AF L  
Sbjct: 508 IQFFKDIEIPKIFQPAFQT--FTKPSVIQAQAWPIVSTGADLVGLAATGSGKTLAFLLPA 565

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++    R    + PLAL +APTRELA Q+    + +   T +      GG     + 
Sbjct: 566 LMEIIKHPKR-KYGATPLALVMAPTRELAQQIEEVCKNVVKGTAIRQLCVYGGTGKGLQV 624

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L++G  I+VGTPGRL D +     ++  +K +VLDEAD MLD+GF   IE I++  PK
Sbjct: 625 RSLRSGVDIIVGTPGRLNDLLT--PNHLETVKFLVLDEADRMLDMGFMPQIEKIINQVPK 682

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD------ 232
           +R+ LMFSAT    + +L+  +    VRV + +     +   ++ ++             
Sbjct: 683 ERQTLMFSATWPREVESLSNRFLNKPVRVTVGNTELSANINVHQHIVATTGMTRPDVAKM 742

Query: 233 ---NAIVNILRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQ 288
                     +       IVFC+ + +   F++    E     V +     Q +R   L 
Sbjct: 743 VGEQIQEIHNQDKKDNLIIVFCNQKRNCDHFSEYLYNEFQMNSVVMHSGKEQYQRERGLA 802

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  R  + IATDVAARG+D+P+++ V++ +  +N E+ +HR GRTGRAG+KG S   +
Sbjct: 803 NFKSHRIPIMIATDVAARGLDIPNVKAVVNLDFPNNIEDYVHRIGRTGRAGKKGDSYSYV 862

Query: 349 PQNM--QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
            +     R   ++ + A   +     P++E + +   Q
Sbjct: 863 SREDNNLRDLAKILQRAKQDIP----PALEDLLQYSKQ 896


>gi|120556818|gb|ABM26902.1| SrmB [Serratia marcescens]
          Length = 439

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/424 (28%), Positives = 200/424 (47%), Gaps = 11/424 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     + +AL ++GY   T++Q A + P +  +DVL SA TG+GKT AF L + 
Sbjct: 4   TTFSELELDDRLIDALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLLPVL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    + S    P  L + PTRELA+QV  +   L A T + +A   GGV+      
Sbjct: 64  QHLLDFPRKKS--GPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHAE 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  +VV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +
Sbjct: 122 VFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRWR 181

Query: 180 RRMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + L+FSAT           +  ++        S   +   + +      +  +   +++
Sbjct: 182 NQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVQHKTALLIH 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    + +++F   R  V      L E       L GE+ Q +R+ A++ M DGR  V
Sbjct: 242 LLKQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVNV 301

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+ D+  V + ++    +  LHR GRTGRAGRKG ++ ++  +      
Sbjct: 302 LVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLG 361

Query: 358 RLFREANVS----VVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHD 412
           ++ R  N      V+ E  P  +   E+   +  +  L      +   K+   V +   D
Sbjct: 362 KVGRYLNEPLKARVIDELRPKTKVPNEKSNGKPSKKVLAKRAEDKARNKEKAKVKVRHRD 421

Query: 413 PEKI 416
            + +
Sbjct: 422 AKNV 425


>gi|153001334|ref|YP_001367015.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS185]
 gi|151365952|gb|ABS08952.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
          Length = 427

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 117/381 (30%), Positives = 190/381 (49%), Gaps = 4/381 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ T VQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTPVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L        +   + SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNAPLEYQLQSEQESTI--HQRVITVNRPMKTALLAHLIKEHEWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQ 388
           V E     EA  E  A+ + Q
Sbjct: 377 VREQIVGFEADDEMPAELLEQ 397


>gi|328880510|emb|CCA53749.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 472

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 11/378 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q A L   L  +DVL   +TGSGKT+AFGL L       
Sbjct: 34  DLPAEVLDVLARLGLDTPFPIQSATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR---A 90

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + +  P AL + PTRELA QV   LE       + +A  +GG+S+ R+   L++GA
Sbjct: 91  AGRRAESRRPHALVLVPTRELAQQVTDALEPFARALKLRLATVVGGMSIGRQATALRDGA 150

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +++ TPGRL D +  K   +  + A VLDEAD+M DLGF   +  +LD    + + ++F
Sbjct: 151 EVLIATPGRLMDLVERKDCRLDRVAATVLDEADQMADLGFMPQVTELLDLVRPEGQRMLF 210

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++   +   S +D+  + V  +D+              
Sbjct: 211 SATLDRNVDLLVERYLADPVVHSVDPSSATVSTMDHHVLHVHGADKFATATE--IAARDG 268

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F +T+A+V RFTK L     +  AL G  SQ  R+  L   R G   V +AT+VAA
Sbjct: 269 RVIMFLATKAAVDRFTKHLLGSGVRAAALHGGKSQPLRTRTLDRFRSGEVPVLVATNVAA 328

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G+ V ++    +R   RL  +A +
Sbjct: 329 RGIHVDELDLVVNVDPPADHKDYLHRGGRTARAGESGLVVTLVTPEERRDVARLMADAGI 388

Query: 366 SVVWEPAPSVEAIRERDA 383
                  P V  +R  +A
Sbjct: 389 R------PQVTQVRSGEA 400


>gi|297709568|ref|XP_002831500.1| PREDICTED: probable ATP-dependent RNA helicase DDX53-like [Pongo
           abelii]
          Length = 629

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 167/372 (44%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + ++++  G V  T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 227 FQQYPD-LLKSITRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLD 285

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  +    Y+  G+      GG +   +  D+  
Sbjct: 286 SQPISREQRNGPGMLVLTPTRELALQVEAQCSK-YSYKGLKSICIYGGRNRIGQIEDISK 344

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTV 404

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA +Y +   +           + +    ++    ++       +   
Sbjct: 405 MTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENM 464

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S + +    +         V +L G     ++  AL+  + G  ++ I T
Sbjct: 465 SPNDKVIMFVSQKHTADDLSSDFNIQGISVESLHGNTEHSDQERALEDFKSGNIKILITT 524

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D   RG+DL D+  V + +   N E  +HR G  GRAG+ G SV +I Q   + A  L +
Sbjct: 525 DFVPRGLDLNDVTHVYNYDFPRNIEVYVHRVGYIGRAGKTGTSVTLITQRDSKMAGELIK 584

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 585 ILDRANQSVPED 596


>gi|224052117|ref|XP_002190981.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 708

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 119/438 (27%), Positives = 197/438 (44%), Gaps = 19/438 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  VQ    NP    KDV+  A+TG+GKT +F + L   
Sbjct: 130 FSNFSISKETVQLLQARGVTYLFPVQVKTFNPVYTGKDVIAQARTGTGKTFSFAIPLIEK 189

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E+        P  L + PTRELA QV ++ + +  K    V    GG   + +   +
Sbjct: 190 LQGESQERRRGRPPKVLVLCPTRELANQVAKDFKDITRKL--TVGCFYGGTPYNGQIDLM 247

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G  I+VGTPGR+ DH++   L+++ +K VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 248 RSGIDILVGTPGRIKDHLQNGKLDLTKVKHVVLDEVDQMLDMGFAEQVEDILRVAYKKDS 307

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----------VLVALSDR 231
                  +  A                   +         +A             +    
Sbjct: 308 EDNPQTLLFSATCPHWVYDVAKKYMKTRYEQIDLIGKKTQKAATTVEHLAIECHWSQRAA 367

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        IVFC T+   +      +          G++ Q++R   L+  R
Sbjct: 368 VIGDVIQVYSGSQGRTIVFCETKKEANELALNASIKQDCQSLH-GDIPQKQREITLKGFR 426

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ +    + 
Sbjct: 427 NGSFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQRK 486

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLL 408
            + +   + ++A ++      P+   I +   +DA R L D +   +I+   +    ++ 
Sbjct: 487 EEYQLRHVEQKAGITFKRVGVPTATDIIKASSKDAMRCL-DSVPQTAIEYFRESAQLLIK 545

Query: 409 AKHDPEKIAAGFLRIHRA 426
            K     +AA    I  A
Sbjct: 546 EKGPVNALAAALAHISGA 563


>gi|104783928|ref|YP_610426.1| ATP-dependent RNA helicase DbpA [Pseudomonas entomophila L48]
 gi|95112915|emb|CAK17643.1| ATP-dependent RNA helicase [Pseudomonas entomophila L48]
          Length = 461

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 128/376 (34%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSAAMLANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LAK++     +          S I+ R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIEQLAKDF-MRQPQQVKVEALHSDSQIEQRFIEIDPQQRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDLVTHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L+LVI+ EL+ + E  +HR GRTGRAG KG+++ ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDLVINVELARDAEIHVHRVGRTGRAGEKGVAISLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
              N  + WE   +++
Sbjct: 361 DLQNKPLRWEQLDNLK 376



 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 24/75 (32%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G        +   +  G K K     ++  L   +G+  + +G I +   + FV V 
Sbjct: 376 KSKGGEPLLPTMTTLCIGAGRKDKLRPGDILGALTGDAGLPGKQVGKIAIFDFVAFVAVE 435

Query: 515 ADGVDLLRRTVKLDK 529
                   + +   K
Sbjct: 436 RAVAKQAMQRLNSGK 450


>gi|71027499|ref|XP_763393.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350346|gb|EAN31110.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 451

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 173/381 (45%), Gaps = 15/381 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +   I  A+S+ G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  E 
Sbjct: 61  LKPEILRAISDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLDVEA 120

Query: 66  -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSV 114
                   D   P      + I+ TRELA Q+  E +        V    +         
Sbjct: 121 EEGKRDAEDNVKPVCRVSCIGISHTRELAFQIKNEFDRFSKYLPQVRCEVVYGGVPIQKD 180

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFIL 173
               +D     HI+VGTPGRL   ++ K LN+  +K  VLDE D+ L+    R D++ I 
Sbjct: 181 VAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSVKHFVLDECDKCLEKLDMRQDVQSIF 240

Query: 174 DSSPKKRRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            S+PKK++++ FSAT++  I     +  Q                 +    V +A SD++
Sbjct: 241 LSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVFVDDESKLTLHGLLQYYVKLAESDKN 300

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++L        I+F  + +       +L E  F  +A+   L Q ER N     ++
Sbjct: 301 RKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTECNFPSIAIHAGLDQSERINRYTQFKN 360

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQN 351
              R+ +ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +    
Sbjct: 361 FDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAITFVSSPE 420

Query: 352 MQRRAERLFREANVSVVWEPA 372
              + E + +   V++   PA
Sbjct: 421 DSSQLEDVQKRFEVNISEIPA 441


>gi|326777924|ref|ZP_08237189.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658257|gb|EGE43103.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 521

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 84  EMPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR---T 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 141 AGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGA 200

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 201 EVVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRMLF 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+              
Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTE--IAARDG 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L+  + G   V +AT+VAA
Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P +  +R  +A+
Sbjct: 439 T------PQIAQVRSGEAE 451


>gi|270158633|ref|ZP_06187290.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|289166549|ref|YP_003456687.1| ATP-dependent RNA helicase [Legionella longbeachae NSW150]
 gi|269990658|gb|EEZ96912.1| ATP-independent RNA helicase DbpA [Legionella longbeachae D-4968]
 gi|288859722|emb|CBJ13695.1| putative ATP-dependent RNA helicase [Legionella longbeachae NSW150]
          Length = 470

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 208/377 (55%), Gaps = 9/377 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++P  Q + ++L+   Y N+T +Q   L   L+ +D++  AQTGSGKT AF L+L +
Sbjct: 12  SFSSLPLRQELIKSLASANYENMTPIQTQSLPIILKNQDIIAQAQTGSGKTAAFALSLLN 71

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERR 119
            L           A   L + PTRELA QV + +  L      V  +   GG+ +  +  
Sbjct: 72  NLKIS------FFAVQGLVLCPTRELAEQVSQAIRRLACLMPNVKIINLSGGIPMKPQLD 125

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++GAH++VGTPGR+  H++   L++S LKA+VLDEAD MLD+GF DD++ I+   PK+
Sbjct: 126 SLRHGAHLIVGTPGRILKHLKNGSLDLSQLKALVLDEADRMLDMGFFDDMKSIISVCPKQ 185

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT    I  ++K +  +   + + S   + +  +Y   +   + +   + ++L
Sbjct: 186 RQTLLFSATYPEEIKQISKQFMNNPQEIRVESPAEEINIEEYFYEVTKQAQKFPLLKSLL 245

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++   + ++FC+TR      T +L E  F  +AL+G++ Q +R  A+    +    + +
Sbjct: 246 LHYRPVSTLIFCNTRQQTVEVTDLLIEEGFSAIALNGDMEQVDRDLAVLRFANHSCSILV 305

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+ +L  VI+ +L+ + E  +HR GRTGRAG KG+++ +      +R   +
Sbjct: 306 ATDVAARGLDIKELSTVINFDLAFDHEVHIHRIGRTGRAGCKGIALSITTPADAQRICAI 365

Query: 360 FREANVSVVWEPAPSVE 376
                  + W     +E
Sbjct: 366 EDNMPHPINWGNINKLE 382



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL--- 520
                  LS G K K     ++  L + +G+   ++G I +    ++V +     D    
Sbjct: 391 PEMVTLCLSSGKKDKIRPGDILGALTKDAGLAGNTVGKINITASHSYVAIHHSQADKAQQ 450

Query: 521 -LRRTVKLDKGIQLKYL 536
            L+R     + + ++ +
Sbjct: 451 YLQRGTLKGRKVNVRKI 467


>gi|182437304|ref|YP_001825023.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465820|dbj|BAG20340.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 521

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 124/379 (32%), Positives = 192/379 (50%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 84  EMPAPLKAALVAEGMTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR---T 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 141 AGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRIATVVGGMSIGRQAGALRGGA 200

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 201 EVVVATPGRLKDLIERGDCRLDRVTITVLDEADQMADMGFMPQVTELLDQVNPDGQRMLF 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y KD V  ++       + +++  + V  +D+              
Sbjct: 261 SATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTE--IAARDG 318

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V + T  L     +  AL G  SQ +R+  L+  + G   V +AT+VAA
Sbjct: 319 RVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLERFKTGHVTVLVATNVAA 378

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  +A +
Sbjct: 379 RGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTRLMADAGI 438

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P +  +R  +A+
Sbjct: 439 T------PQIAQVRSGEAE 451


>gi|17507879|ref|NP_491876.1| Germ-Line Helicase family member (glh-2) [Caenorhabditis elegans]
 gi|51316069|sp|Q966L9|GLH2_CAEEL RecName: Full=ATP-dependent RNA helicase glh-2; AltName:
           Full=Germline helicase 2
 gi|14573988|gb|AAK68269.1|AC006625_1 Germ line helicase protein 2, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 974

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 106/393 (26%), Positives = 176/393 (44%), Gaps = 25/393 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + 
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLLPIM 611

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + L+ END  +       P  + + PTREL  Q+  E      +T + +    GG++V  
Sbjct: 612 ARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGY 671

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-----IEF 171
            +  ++ GA I+VGT GR+        + +   +  VLDEAD M+D           + +
Sbjct: 672 NKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIVNY 731

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-YRAVLVALSD 230
                 + R+ LMFSAT   ++   A+N+ K+   +    +    +            S+
Sbjct: 732 ESMPKKENRQTLMFSATFPDSVQEAARNHLKEGYIMLAIDKIGAANKCVLQEFEKCDRSE 791

Query: 231 RDN------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           + +                       K  IVF S RA       +L+      + + G  
Sbjct: 792 KKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSSAQVPAITIHGAR 851

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR 
Sbjct: 852 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 911

Query: 339 GRKGMSVFVIPQ--NMQRRAERLFREANVSVVW 369
           G  G +   I +  N+     R+  +A+  V  
Sbjct: 912 GNAGRATSFISEDCNLLSELVRVLSDADQLVPE 944


>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
           Silveira]
          Length = 840

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 21/474 (4%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+N  + + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + + 
Sbjct: 319 STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKTAAFIIPIL 378

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 379 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 435

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL++ PK
Sbjct: 436 VLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPK 495

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + S+      +              R   +
Sbjct: 496 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYL 555

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +         IVF   +    R   +      +   L G +SQ++R NA++  RDG+ 
Sbjct: 556 VLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKV 615

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 616 PFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 675

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +   +          +  V+ A+ +  A ++ +    ++ I  +EK+           +
Sbjct: 676 VKAAAKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKE----------EK 725

Query: 415 KIAAGFLRIHR-AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           ++A   +++ R   L   E                + R  K    S  N   S 
Sbjct: 726 QLAQAEMQVKRGQNLIKHESEIMARPKRTWFETEREKREAKKRALSELNGPDSV 779


>gi|50551977|ref|XP_503463.1| YALI0E02552p [Yarrowia lipolytica]
 gi|74659870|sp|Q6C799|DBP8_YARLI RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49649332|emb|CAG79042.1| YALI0E02552p [Yarrowia lipolytica]
          Length = 442

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 118/424 (27%), Positives = 200/424 (47%), Gaps = 24/424 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E+LS       +++Q+A +   ++ KD +  A+TGSGKT+AF   + +    + 
Sbjct: 8   LPEWLNESLSNMAITKPSAIQKACIPQIMKGKDCIGGARTGSGKTIAFAAPMLAEWSKDP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      L + PTRELA+Q+  +   L A   + VA+  GGV + ++  +LQ   H
Sbjct: 68  ------CGIFGLVLTPTRELAIQIAEQFTALGANMNIRVALIYGGVDMVKQSLELQKMPH 121

Query: 127 IVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            V+ TPGRL DHIR  G +       ++ VV+DEAD +L  GF  D++  +D  P   + 
Sbjct: 122 FVIATPGRLADHIRSSGEDTIRGFRRVRYVVMDEADRLLTPGFVPDLKTCMDLLPDPSKR 181

Query: 183 ----LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIV 236
                  + T +          +       IAS+    S +    + +    R      +
Sbjct: 182 QTLLFTATVTDAVRALKDRTGEKGPPFIHEIASDIAVPSTLTQSYLFLPGYVREAYLWAI 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                +  K+AI+F +   +     ++L     +  +L  E+ QQER NAL   R   AR
Sbjct: 242 LTHPDNEKKSAIIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAAR 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+P +E+VI+ +L ++ ++ +HR GRT RAGRKG SV ++ +    R 
Sbjct: 302 VLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVTRV 361

Query: 357 ERLFREANVSVVWEPAPSVEAIRER------DAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             +       +        + + E        A+R  Q  L +++    E+K +    A 
Sbjct: 362 TNIEERVGTKMEKYDLIEDDKVVEEYLTPASTAKR--QAVLDMEAENFGERKRIQRKKAG 419

Query: 411 HDPE 414
            D +
Sbjct: 420 LDVD 423


>gi|319788359|ref|YP_004147834.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466871|gb|ADV28603.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
           11-1]
          Length = 579

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 186/371 (50%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   LR  DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 16  DLHPELLAGLESAGFTRCTPIQALTLPVALRGGDVAGQAQTGTGKTLAFLVAVMNRLLTR 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     ++ G+  A+  GGV   ++R  LQ G
Sbjct: 76  PALAERKPEDPRALILAPTRELAIQIHKDAVKFGSQLGLRFALVYGGVDYDKQRELLQQG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P +    
Sbjct: 136 VDVIIATPGRLIDYVKQHKVVSLHACEMCVLDEADRMFDLGFIKDIRFLLRRMPVRTERQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRLYYPSDEEKLPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V R  + L +  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 SEGARTMVFVNTKVFVERVARALEKAGYRVGVLSGDVPQKKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 316 DVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVVWEPA 372
                +  EP 
Sbjct: 376 YIEQKIPSEPV 386


>gi|302536730|ref|ZP_07289072.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302445625|gb|EFL17441.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 596

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 195/384 (50%), Gaps = 14/384 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F  +   P+   EAL   G V+   +QE  L   L   DV+  A+TG+GKT+ FGL 
Sbjct: 60  LTTFRELGIFPET-AEALEAVGIVSPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLP 118

Query: 58  LASTL----LAENDRFSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           L   +      E  R  P     +P AL + PTREL  QV  +L        V V    G
Sbjct: 119 LLERVVVPADVEAGRARPDQLTDSPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYG 178

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   +   L+ G  ++VGTPGRL D    K L++S +KA+VLDEADEMLDLGF  D+E
Sbjct: 179 GRAYEPQVEALKKGVDVIVGTPGRLLDLAGQKKLDLSRVKALVLDEADEMLDLGFLPDVE 238

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVA 227
            I++  P KR+ ++FSAT+  A+  LA+ Y      +   SE+      ++I        
Sbjct: 239 KIMNLLPAKRQTMLFSATMPGAVIGLARRYMSQPTHIRAVSEDGEGATVANITQHVFRAH 298

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  IL+  G   A++FC T+ + +   + L    F   A+ G+L Q  R  AL
Sbjct: 299 NMDKPELVSRILQAEGRGLAMIFCRTKRTAADIAEQLERRGFASGAVHGDLGQGAREQAL 358

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R+G+  V + TDVAARGID+  +  VI+ +   + +  LHR GRTGRAG KG +V +
Sbjct: 359 RAFRNGKVDVLVCTDVAARGIDVEGVTHVINYQTPEDEKTFLHRVGRTGRAGNKGTAVTL 418

Query: 348 IPQNMQRRAERLFREANVSVVWEP 371
           +  +   R + + +   +      
Sbjct: 419 VDWDDIPRWQLINKALELDFHEPE 442


>gi|119492913|ref|XP_001263731.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119411891|gb|EAW21834.1| DEAD/DEAH box RNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 584

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 175/399 (43%), Gaps = 31/399 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  ++ E +    Y   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 126 VKNFDDAGLHPIMRENIRLCNYEVPTPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPV 185

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 186 LSQLMGKAKKLAAPRPNLANGFDPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 245

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG  V  +R +LQ G  I++GTPGRL D +    + ++  +K  ++DEADE+L
Sbjct: 246 LRPCVVYGGAPVREQREELQKGCDILIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELL 305

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  D   I+     +     R M+  +           K   +D VR+ I      H
Sbjct: 306 LSDWESDFTKIMSGGDVNEDADHRYMMFSATFNRECRRLARKFLAEDHVRIRIGRPGSTH 365

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++D   +      +   + ++L        ++F +T+         L        ++  
Sbjct: 366 INVDQTIIYAEDHLKKQCLYDLLLAMPPSRTLIFVNTKTQADFLDDFLYNMGLPSTSIHS 425

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  R  R  + +AT V+ARG+D+ ++  V++ +L S         +HR 
Sbjct: 426 DRTQREREDALRSFRSARCPIMVATGVSARGLDIKNVMHVVNFDLPSATHGGITEYIHRI 485

Query: 333 GRTGRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
           GRT R G +G++         ++     ++  E    V 
Sbjct: 486 GRTARIGNEGLATSFYNDRNSDIAPDLVKILIETGQKVP 524


>gi|58428518|gb|AAW77555.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 647

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 88  DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNR 147

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 148 PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 208 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 267

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 268 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSR 327

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 328 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 387

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 388 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 447

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 448 YIEQKIPVEPVTS 460


>gi|84625712|ref|YP_453084.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|161898959|ref|YP_202940.2| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188574752|ref|YP_001911681.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|67461243|sp|Q5GUR8|RHLB_XANOR RecName: Full=ATP-dependent RNA helicase rhlB
 gi|84369652|dbj|BAE70810.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519204|gb|ACD57149.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 574

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 112/373 (30%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|322705505|gb|EFY97090.1| DEAD/DEAH box RNA helicase [Metarhizium anisopliae ARSEF 23]
          Length = 650

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 107/399 (26%), Positives = 176/399 (44%), Gaps = 30/399 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +  V+ E +   GY   T +Q+  +   L+  DV+  AQTGSGKT A+ + +
Sbjct: 98  LRTFKDAALHPVMAENIKLMGYDAPTPIQKYTIPSMLQGHDVIGIAQTGSGKTAAYLIPI 157

Query: 59  ASTLLAENDRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGV 103
            S L+ +  + +                   PL L +APTRELAVQ+  E      ++ +
Sbjct: 158 LSKLMGKAKKLAAPRPNPATYREGIDAVTAEPLVLVVAPTRELAVQIFNEARKFCYRSML 217

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLD 162
              V  GG+   ++   L  G  I+VGTPGRL D I    +     LK +++DEADEMLD
Sbjct: 218 RPCVVYGGLPTAQQISLLSKGCDILVGTPGRLVDFISRPHILTLRRLKYMIIDEADEMLD 277

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD----AVRVNIASENRQHSD 218
             + D++  +L    +    + +    +          +       VR  +        +
Sbjct: 278 SDWNDELSQVLSGGEQDEGNVKYGLFSATFPKAARDLAKDHLSAAHVRFRVGRAGSTTEN 337

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I    +     ++ + ++ +L        I+F ++R  V      L      V ++  E 
Sbjct: 338 IKQVILATERDEKRDTLLRLLNQMTGVRTIIFANSRREVDNLDDFLYNMGLPVTSMHSER 397

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGR 334
           +Q+ER  AL+  R G+A + IAT V ARGID+ ++  VI+ +L S      E   HR GR
Sbjct: 398 TQKEREAALRSFRAGQAPILIATGVTARGIDVRNVMHVINYDLPSMEHGGIEEYTHRIGR 457

Query: 335 TGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVVW 369
           TGR G +G++          +M     R   E    V  
Sbjct: 458 TGRIGHRGLATSFFDPVNDDSMGSVLTRTLLETKQEVPE 496


>gi|317123400|ref|YP_004097512.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
 gi|315587488|gb|ADU46785.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
           43043]
          Length = 528

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 123/360 (34%), Positives = 177/360 (49%), Gaps = 3/360 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +  AL++ G    T +Q A L   L  +DVL   +TGSGKT AF L + + L A  
Sbjct: 15  VPSALTAALADLGITTPTPIQAATLPDSLAGRDVLGRGRTGSGKTYAFLLPIVARLAAAP 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R SP   P AL +APTRELA Q+   L  L A  G+      GGV  + + + L+ G  
Sbjct: 75  TRRSPGR-PRALILAPTRELATQIDTALAPLAATAGLNSLTIFGGVGQNPQVQGLRRGVD 133

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV  PGRL D +    +++  ++  VLDEAD M DLGF   +  I+D +P   + ++FS
Sbjct: 134 VVVACPGRLEDLMGQGHVSLDSVEITVLDEADHMADLGFLPGVRRIMDKTPATGQRMLFS 193

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  AI  + K +          S     S + +  + V      +  V +        
Sbjct: 194 ATLDGAINVIVKRFLTSPRTHEADSAQSPVSTMAHHVLHVTSD--AHLAVILDLAAAPGR 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    +  K L       V L G LSQ  R+  +     GRA+  +ATD+AAR
Sbjct: 252 KVVFTRTKHRAKKLAKQLNSSGVPAVELHGNLSQGARTRNMDDFHSGRAQTLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++  +  R    L R+A + 
Sbjct: 312 GIHVDDVALVIHADPPVEHKAYLHRSGRTARAGADGTVVTMMLDDQVRDVRDLTRKAGIK 371


>gi|296211536|ref|XP_002752462.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Callithrix jacchus]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|254381080|ref|ZP_04996445.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194339990|gb|EDX20956.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 508

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 190/377 (50%), Gaps = 11/377 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 86  DMPAELLAALGTQGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR---T 142

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L+ GA
Sbjct: 143 AGQRAEARQPLALILVPTRELAQQVADALTPYARAVKLRLATVVGGMPIGRQANALRGGA 202

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    + + ++F
Sbjct: 203 EIVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRMLF 262

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 263 SATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHATTTE--IAARDG 320

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 321 RVIMFLDTKHAVDRLTQDLLSSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAA 380

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL + A +
Sbjct: 381 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMNRLMQAAGI 440

Query: 366 SVVWEPAPSVEAIRERD 382
                  P    +R  D
Sbjct: 441 ------VPQTTQVRSGD 451


>gi|109096393|ref|XP_001104339.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like isoform 5
           [Macaca mulatta]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|73996608|ref|XP_851051.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 2 [Canis familiaris]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|2655202|gb|AAB87902.1| U5 snRNP 100 kD protein [Homo sapiens]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|312376077|gb|EFR23272.1| hypothetical protein AND_13185 [Anopheles darlingi]
          Length = 621

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/473 (25%), Positives = 218/473 (46%), Gaps = 12/473 (2%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            K  E  +      A++E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF +   
Sbjct: 127 FKSLEGKVSDNTLRAIAEMGFTKMTEIQAKSIPPLLEGRDLVGSAKTGSGKTLAFLIPAV 186

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     RF P +   A+ I+PTRELA+Q+   L+ L A       + +GG S H E  
Sbjct: 187 ELI--HKLRFKPRNGAGAIIISPTRELAMQIFGVLKELMAHHHQTYGLLMGGASRHTENE 244

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +I+V TPGRL DH          +L+ +++DE D +L++GF +D++ I+   PK
Sbjct: 245 KLGKGLNIIVATPGRLLDHLKSTPNFLYKNLQCLIIDECDRILEIGFEEDLKQIISILPK 304

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
           KR+ L+FSAT S  +  L +   K         +N+  + +       ++     R   +
Sbjct: 305 KRQTLLFSATQSSRLDELGRLALKSEPIYVGVDDNKTEATVTGLEQGYIVCPSEKRLLVL 364

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++       V ++ G+  Q +R++      +  +
Sbjct: 365 FTFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVQSIHGKQKQAKRTSVFFQFCNAES 424

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQR 354
            + + TDVAARG+D+P ++ ++  +  ++ +  +HR GRT R     G ++ ++      
Sbjct: 425 GILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTARGENLCGHALLILRPEELG 484

Query: 355 RAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKHD 412
             + L ++A V +  +E + S  A  +   + +L    FL+ S +   K  V      H 
Sbjct: 485 FLKYL-KQAKVPLNEFEFSWSKIADIQLQLENLLSKNYFLNQSGKLAFKSYVRSYEGHHM 543

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +      + + +          P  +  G+      S + + G     +FK 
Sbjct: 544 KDVFNIANMDLVQVAKNFGFTQPPY-VDFGKSFKGLPSSSRRPGNRGLGHFKD 595


>gi|238505736|ref|XP_002384077.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220690191|gb|EED46541.1| DEAD/DEAH box RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 604

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 96/410 (23%), Positives = 170/410 (41%), Gaps = 42/410 (10%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  ++ E +    Y   T +Q   +   +   D++  AQTGSGKT AF + +
Sbjct: 135 IKSFDDAGLHPIVRENVKLCHYDIPTPIQAYAIPAVMTGHDLIAIAQTGSGKTAAFLIPV 194

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 195 LSKLMGKAKKLAAPRPNLADGFNPIVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 254

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG  V  +R +LQ G  I++GTPGRL D +    + ++  +K  ++DEADE+L
Sbjct: 255 LRPCVVYGGAPVRDQRDELQKGCDILIGTPGRLLDFMDKPHILSLRRVKYTIIDEADELL 314

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD---------------AVR 206
              +  D   I+    K       S     A                           VR
Sbjct: 315 LADWESDFNKIMSGGGKSESTDWPSYMNEDADHRYMMFSATFNKECRQLARKFLAGDHVR 374

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           + I      H ++D   V      +   + ++L        ++F +++A        L  
Sbjct: 375 IRIGRPGSTHINVDQTIVYSEEHLKKQCLYDLLLAMPPSRTLIFVNSKAQADLLDDYLYN 434

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN-- 324
                 ++  + +Q+ER +AL+  R  +  + +AT V+ARG+D+ ++  V++ +L     
Sbjct: 435 MGLPSTSIHSDRTQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNYDLPRQSH 494

Query: 325 --PENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE----RLFREANVSVV 368
                 +HR GRT R G +G++      +          RL  E N  + 
Sbjct: 495 GGIVEYVHRIGRTARIGNEGLATSFYNHDRDSDLAPDLVRLLLETNQKIP 544


>gi|114644988|ref|XP_509035.2| PREDICTED: probable ATP-dependent RNA helicase DDX23 isoform 2 [Pan
           troglodytes]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|310801624|gb|EFQ36517.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 480

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 128/392 (32%), Positives = 204/392 (52%), Gaps = 14/392 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + +A +  GY   T +Q   +   L  +D++  A+TGSGKT AF L + 
Sbjct: 52  KSFKDLGVADSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVI 111

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +   F        L +APTRELA Q+G++ E L +   +  AV +GG+ +  +  
Sbjct: 112 QALLEKPQAF------FGLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAI 165

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H++V TPGRL DH  + KG ++  LK +V+DEAD +LD+ F   I+ IL   P+
Sbjct: 166 ALGKKPHVIVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPR 225

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +RR  +FSAT+S  I +L +   +D VRV+I+S   Q         + +    +D  +V 
Sbjct: 226 ERRTFLFSATMSSKIESLQRASLRDPVRVSISSNKYQTVSTLLQYYLFIPHQLKDTYLVY 285

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +      K  +VF  T +   R   +L    F  + L G+L+Q  R  AL   R G   +
Sbjct: 286 LANEFAGKKLVVFTRTVSETQRLAILLRTLGFGAIPLHGQLNQTARLGALNKFRAGERSI 345

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P +++VI+ +L+ + +  +HR GRT RAG+ G+++ ++ Q       
Sbjct: 346 LVATDVAARGLDIPLVDVVINHDLAQDSKTHVHRIGRTARAGKSGIALSLVTQYDLEIWL 405

Query: 358 RLFREANVSVVWEPAPSVEAI----RERDAQR 385
           R+           P    E +    R  +AQR
Sbjct: 406 RIEAALGKKQDEYPTQKEEVMVFQSRVEEAQR 437


>gi|58269456|ref|XP_571884.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134114169|ref|XP_774332.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256967|gb|EAL19685.1| hypothetical protein CNBG3130 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57228120|gb|AAW44577.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 615

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 106/381 (27%), Positives = 178/381 (46%), Gaps = 18/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    IP+ I   L  +G  + T +Q   L      +D++  A TGSGKT+AF L    
Sbjct: 185 MK----IPKPILGYLQAKGIKHPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFILPAIM 240

Query: 61  TLLAENDR--FSPASAPLALAIAPTRE-------LAVQVGRELEWLYAKTGVVVAVCIGG 111
             L    +  F     P+ L I P+RE         V +   L+   +   +   +CIGG
Sbjct: 241 AALEMEAKVPFVRGEGPVGLIICPSRELARQTYEQCVAMCTVLKESGSYPELRSLLCIGG 300

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +S+  +   L  G H+VV TPGRL D +  + LN  + K + +DEAD M+D+GF +D+  
Sbjct: 301 ISMADQADVLNKGVHVVVATPGRLIDMLDKRKLNADNCKYLCMDEADRMIDMGFEEDVRS 360

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+     +R+ L+FSAT+   I   A+    + + VN+      + D+      V    +
Sbjct: 361 IMSHFKYQRQTLLFSATMPRKIQDFAQQSLINPILVNVGRAGAANMDVIQEVEYVKQEAK 420

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       I+F   +  V    + L     + VA+ G  +Q+ER  A++  +
Sbjct: 421 MVYLLECLQKTPPP-VIIFSDNKNEVDDIQEYLLLKGIEAVAIHGSKTQEEREYAIRSFK 479

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +A+ VA++G+D  +++ VI   +    E+ +H  GRTGR+G+ G++   +  N
Sbjct: 480 TGAKDVMVASGVASKGLDFNEIQHVIVYSMPKEIEDYVHEIGRTGRSGKTGLATTFVNMN 539

Query: 352 MQR----RAERLFREANVSVV 368
                    + L  EA   + 
Sbjct: 540 TSEQTLLDLKYLLMEAKQKIP 560


>gi|325964952|ref|YP_004242858.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323471039|gb|ADX74724.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 633

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 125/393 (31%), Positives = 197/393 (50%), Gaps = 8/393 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF + L
Sbjct: 1   MTTFAALGTPKALADTLTAQGIETPFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPL 60

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E   F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+
Sbjct: 61  VARLAEREAPYFRKPGRPMGLVLAPTRELATQINATIEPLAKAAGLNTTVIYGGISQARQ 120

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P
Sbjct: 121 EKALRAGVDIVIACPGRLEDLIRQRILTLEAVEITVLDEADHMADLGFLPVVKKLMDMTP 180

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  + + Y  + +  ++       + +++  ++V        ++ 
Sbjct: 181 SQGQRLLFSATLDNGVDKIVQRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 240

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  + F  T+    +  K L +     V L G LSQ  R   L    +G  RV
Sbjct: 241 ELASGAGRRVL-FMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 300 LVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTITLPEQQTDVK 359

Query: 358 RLFREANVSVVWE----PAPSVEAIRERDAQRI 386
           +L + A V V +E     +P V  +    A++I
Sbjct: 360 KLMKAAGVDVSFERVTATSPIVADLVGEMAEKI 392


>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
          Length = 828

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 123/487 (25%), Positives = 210/487 (43%), Gaps = 34/487 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 304 KSFQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 363

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +     + + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 364 ERLLYRPRKVPTSR---VVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 420

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 421 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 480

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 481 SRQTMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYL 540

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       IVF  ++    R   +      +V  L G +SQ++R  +++  RDG+ 
Sbjct: 541 IVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKV 600

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 601 SFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 660

Query: 356 AERLF---REANVSVVWEPAPSVEA-----------------IRERDAQRILQDPLF--- 392
            +      R     +V     + EA                 +RE   ++ L        
Sbjct: 661 VKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVT 720

Query: 393 --LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
              + +  D++ M        + EK      +     L  P +     L     +  DD+
Sbjct: 721 RGSNLLNHDKEIMSRPKRTWFESEKEKLQAKQRSLEELNGPSKKKKGKLSGKDKKKLDDN 780

Query: 451 RAFKVGG 457
           R  + G 
Sbjct: 781 RERREGK 787


>gi|149370417|ref|ZP_01890106.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355968|gb|EDM44525.1| possible ATP-dependent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 450

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 189/386 (48%), Gaps = 10/386 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +   + +   + + G  + T +QE   +     KD++  AQTG+GKT A+ L +
Sbjct: 1   MITFSELKLGKQLQYGIDDLGITHPTPIQEQSFSVIKAGKDMVGIAQTGTGKTFAYMLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             TL     ++S    P  L + PTREL VQV  E+E L     V V    GGV+++  +
Sbjct: 61  LETL-----KYSREINPRVLVLVPTRELVVQVVEEIEKLGKYLSVRVTGVYGGVNINTHK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  +VV TPGRL D    + +++ ++K +++DE D MLDLGFR  I  I +  P+
Sbjct: 116 QAVAQGCDVVVATPGRLYDLALSRAVSLKNIKKLIIDEVDVMLDLGFRFQITNIFELLPE 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDN--AI 235
           +R+ ++FSAT++  +  L  ++ K   ++++  S     +      V+     + N    
Sbjct: 176 RRQNILFSATMTDDVENLIDDFFKSPEKISVAVSGTPLDNIEQQSYVVKNFYTKANLLNH 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +   +    K  +   + R + + +  V   +  QV  +    +Q  R  +++    G+ 
Sbjct: 236 LLKDKEAFTKVLVFVPNKRQADTLYQVVDDFYPDQVSVIHSNKTQNYRLRSIENFNAGKK 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R+ I+TDV +RG+DL  +  V++ ++    EN +HR GRTGRA  +G S+    +     
Sbjct: 296 RILISTDVMSRGLDLDRITHVVNMDVPRYAENYMHRIGRTGRAEAQGKSILFSTEKEALL 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRER 381
            E +    + ++   P P    + ++
Sbjct: 356 KEAIETLMDYTIPLIPIPEEVEVSDK 381


>gi|119179097|ref|XP_001241172.1| hypothetical protein CIMG_08335 [Coccidioides immitis RS]
 gi|118597485|sp|Q1DMX8|PRP28_COCIM RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 817

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 382 SGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 441

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +  +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   
Sbjct: 442 LPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFS 501

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 502 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 561

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                         +     +    +  + +                             
Sbjct: 562 EKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 621

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + + +  +  V 
Sbjct: 622 VDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVT 681

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 682 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 741

Query: 334 RTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 742 RTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQSK 792


>gi|41327771|ref|NP_004809.2| probable ATP-dependent RNA helicase DDX23 [Homo sapiens]
 gi|160385708|sp|Q9BUQ8|DDX23_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=100 kDa U5 snRNP-specific protein; AltName:
           Full=DEAD box protein 23; AltName: Full=PRP28 homolog;
           AltName: Full=U5-100kD
 gi|12803125|gb|AAH02366.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapiens]
 gi|119578415|gb|EAW58011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|119578419|gb|EAW58015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23, isoform CRA_b [Homo
           sapiens]
 gi|123981044|gb|ABM82351.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|123995847|gb|ABM85525.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [synthetic construct]
 gi|189065458|dbj|BAG35297.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|302552490|ref|ZP_07304832.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470108|gb|EFL33201.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 721

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 136/489 (27%), Positives = 219/489 (44%), Gaps = 22/489 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 121 TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 180

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 181 RL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLKMKVVCGGTSMGNQIYA 237

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 238 LERGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPAGG 297

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I+TL K Y  + V   + S     + + +  ++V    +D A V    
Sbjct: 298 QRMLFSATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV--KPKDKAPVTAAI 355

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L+  + G     +A
Sbjct: 356 ASRKGRTIIFVRTQLGADRIAEQLCDSGVKADALHGGMTQGARTRVLEDFKKGYVNALVA 415

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 416 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLM 475

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A V        S  A     A+          +    E +   V  A    E+  A  
Sbjct: 476 EDAGVDATRHIIQSAGAFDPEVAE-------ITGARSMTEVQAESVGNAAQQAEREVAQL 528

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL-------S 472
            + + RA   A E       +  R           V  G           S+        
Sbjct: 529 TKELERAQRRANELREESDRLLARVARERGEEPAAVVAGESAEAPAGVEVSVPEQPTAKD 588

Query: 473 VGSKQKAEA 481
           V  + +AEA
Sbjct: 589 VEREDRAEA 597


>gi|298504304|gb|ADI83027.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens KN400]
          Length = 460

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 143/407 (35%), Positives = 221/407 (54%), Gaps = 14/407 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +   L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L 
Sbjct: 4   KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           S L A + R        AL + PTRELA QVG+EL  L   T  + +    GGV    + 
Sbjct: 64  SRLDALSFRV------QALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAH+V+GTPGRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P 
Sbjct: 118 GSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT   +I  ++   Q++ V V++   + + +  +     V    R  A+  I
Sbjct: 178 KRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAI-EQVFYEVDSGQRIEAVERI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L ++  ++A++FC+T+         LA   +  +A+ G+L Q+ER   L    +  A V 
Sbjct: 237 LGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ EL+ NPE   HR GRTGRAG +G++V ++     R  E 
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIET 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +      ++V     ++  +      +    P+    I G  K  + 
Sbjct: 357 IADVPGSTIVRGDLSTLAPL----TAKPPLPPMVTLCIDGGRKNKLR 399



 Score = 63.5 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           ++          +  G K K     ++  L    G+    +G I V    T+V ++    
Sbjct: 378 AKPPLPPMVTLCIDGGRKNKLRPGDILGALTGEGGMPASEVGKIDVFDFFTYVAIARQSS 437

Query: 519 DLLRRTVKLDKGIQLK 534
           +   + +   +G ++K
Sbjct: 438 E---QALNFLRGHRIK 450


>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
 gi|89517186|gb|EAS19843.1| ATP-dependent RNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 377

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 111/375 (29%), Positives = 183/375 (48%), Gaps = 6/375 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +  AL E  + + T +Q+  +   L  KDVL  A+TGSGKT+A+ L L  
Sbjct: 2   SFESLGLSNQLLFALRENQFSHPTPIQKLAMPDILAGKDVLGIAKTGSGKTMAYALPLLQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERR 119
            L       S      AL + PTRELA QV           T  ++ + + G +    + 
Sbjct: 62  RLEGIE---SENRHITALILVPTRELAAQVSEVFIPYSKALTKPLITMAVYGGASINPQM 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
              N   I+V TPGRL + I    +++ ++KA+VLDEAD+ML  GF+ +++ IL   P K
Sbjct: 119 RKMNNVDILVATPGRLLELIEANAVHLKNVKALVLDEADKMLTKGFKKELDQILKLLPNK 178

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +  L +    D V  ++  +    S I      V  + +   + +++
Sbjct: 179 RQNLLFSATLSEDVDELQRVLLNDPVTASVEEKEEDISLIKQTGYRVTENKKGALLRHLM 238

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +       ++FCS+   V      L ++     A+  + SQ  R++AL   + G     +
Sbjct: 239 KEKEMTQVLIFCSSTYQVDHVNDKLKKNGIASKAIHSKKSQGARNSALSEFKSGELTALV 298

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TD+ ARGID+  L  V++ EL  +P++ +HR GRTGRA   G ++  I          +
Sbjct: 299 STDLLARGIDIEFLPFVVNYELPRSPKDFVHRIGRTGRAENPGEAITFISSEESHHWRVI 358

Query: 360 FREANVSVVWEPAPS 374
            ++  + V  E  P 
Sbjct: 359 QKKMKIKVWTEDLPE 373


>gi|73953220|ref|XP_865308.1| PREDICTED: similar to Probable ATP-dependent helicase DDX41
           (DEAD-box protein 41) (DEAD-box protein abstrakt
           homolog) isoform 2 [Canis familiaris]
          Length = 590

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 177/383 (46%), Gaps = 47/383 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  DI 
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIR 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L+FSAT+   I   AK+     V +N+        D+      V    
Sbjct: 360 TIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEA 419

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+      +                                 +ER+ A++  
Sbjct: 420 KMVYLLECLQKTPPPVS---------------------------------EERTKAIEAF 446

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 447 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 506

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 507 ACDESVLMDLKALLLEAKQKVPP 529


>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase domain-containing protein [Shewanella woodyi
           ATCC 51908]
 gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
           51908]
          Length = 432

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 190/376 (50%), Gaps = 5/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+++   ++E  Y+  T +Q   +   L  KD+L  A TGSGKT AF L +   L   +
Sbjct: 21  IPELLQR-IAELEYLTPTQIQSQSIPHLLEGKDLLGGANTGSGKTAAFALPILQHLHVGD 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNG 124
              +  +   AL + PTRELA QV    +         + V    GGVSV+ +   L+ G
Sbjct: 80  KPVAKGNMVRALVLVPTRELAKQVAASFKSYAQGLTPKLKVEAVFGGVSVNTQMLALRGG 139

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A ++V TPGRL D +    + +S    +VLDEAD ML LGF +++E +L   PK+++ L+
Sbjct: 140 ADVLVATPGRLLDLLSSNAIKLSQASHLVLDEADRMLSLGFAEELEKVLALLPKRKQTLL 199

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L  +     V +++ S          +   V  + +   + +++     
Sbjct: 200 FSATFPEEVKELTDSLLNSPVELHLESTEESTL--VQQVYTVNKNRKTALLAHLINERNW 257

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF S + + +R  + LA+          + SQ  R+  L   + G   V IATD+A
Sbjct: 258 RQVLVFASAKNTCNRLEQKLAKAGVSAQVFHSDKSQGSRTRVLDGFKSGEISVLIATDIA 317

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++  
Sbjct: 318 ARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQHFKLIEKKNK 377

Query: 365 VSVVWEPAPSVEAIRE 380
           + +V E     EA  E
Sbjct: 378 IRLVREQIVGFEADEE 393


>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 1076

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 113/576 (19%), Positives = 229/576 (39%), Gaps = 47/576 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + +A+ ++G+   T +Q   +   L  +DV+  A+TGSGKT AF + +   L   
Sbjct: 274 DLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQDVVGMARTGSGKTAAFVIPMIQKLAQH 333

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +        A+ ++PTRELA+Q  R ++ L + + +   V +GG ++  +  +L    
Sbjct: 334 SHKV----GARAIILSPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMADQFTELARNP 389

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL  H+    + +  ++ +V DEAD + ++GF D ++ I+      R+ L+F
Sbjct: 390 DIIIATPGRLVHHLTEVNMGLHTVQYIVFDEADRLFEMGFADQLQEIITKLSPSRQTLLF 449

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHG 243
           SAT+   +    +    +   V + ++ +    +          ++  A   +       
Sbjct: 450 SATLPSMLAEFVRAGLSNPKLVRLNTDTKISDQLSLSFFTCRHDEKFAALLYLLKDIIKD 509

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  IVF +T+  V     +L +       + G++    R   L   R     V + TD+
Sbjct: 510 DEPTIVFTATKFHVEYLHILLDQARIANTFIHGQMDPVARKINLAKFRSKVVNVMVVTDL 569

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L+ VI+ + +   +  +HR GR  RAGRKG +  ++  +       L    
Sbjct: 570 AARGIDIPMLDNVINFDFAPKEKIFIHRVGRVARAGRKGTAYSLVSPDEIPYMLDLHLYI 629

Query: 364 NVSVVWEPAP--SVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
              +  +  P  +VE +       I Q  +       D +     + AK   E      L
Sbjct: 630 AKKLTNKLLPGQTVEDLEYSFYGNIPQQII-------DRENEFVAIKAKECVE-----LL 677

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
            + R    A  +       +  +  +      K                           
Sbjct: 678 SLKRTIFNAHGKYVRTRPGASHESNKRAKGLDKSQYHPL--------------------- 716

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQ-PDLTFVEV---SADGVDLLRRTVKLDKGIQLKYLG 537
             +   +  +  +    + +++   P+ T  E+    +   D+++   +    +  +   
Sbjct: 717 --MYNFINSNEAVRNDFVQSLKAFRPNQTVFEMTGKKSSAADIMQTKREFHSTVIGQQHR 774

Query: 538 GEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             + +   YK     ++NS+DG      +     K 
Sbjct: 775 RTQAEIEEYKKQDQLNRNSEDGEEAASTKKNSKRKR 810


>gi|42781255|ref|NP_978502.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42737177|gb|AAS41110.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 389

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/361 (27%), Positives = 180/361 (49%), Gaps = 8/361 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            +A  + G+  LT +Q+  +   L  +DV+  + TG+GKT+A+ L L   +  E      
Sbjct: 10  QQAWEKAGFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPE------ 63

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P  + +APTREL +Q+  E++   A T +  A  IGG  + R+   L+    ++VG+
Sbjct: 64  VKQPQVVVLAPTRELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGS 123

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGR+ + IR K L +  +K +V DE D+++       ++ ++ S+ + R+++ FSAT++ 
Sbjct: 124 PGRILELIRMKKLKMHEVKTIVFDEFDQIVKQKMMGAVQDVIKSTMRDRQLVFFSATMTK 183

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           A    A++   +   V +     +        +        N  V  + + G   A+ F 
Sbjct: 184 AAEDAARDLAVEPQLVRVTRAESKSLVEHTYIICERREK--NDYVRRIMHMGDVKAVAFL 241

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +    +   T+ L     +  AL  E S+QER   ++  R G+  + +ATD+AARGID+ 
Sbjct: 242 NDPFRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDID 301

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           DL  VIH EL    +  +HRSGRTGR G++G  V ++    +R+  +  ++  +    + 
Sbjct: 302 DLTHVIHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQEERKLLQFAKKLGIVFTKQE 361

Query: 372 A 372
            
Sbjct: 362 M 362


>gi|294501273|ref|YP_003564973.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|295706620|ref|YP_003599695.1| ATP-dependent RNA helicase [Bacillus megaterium DSM 319]
 gi|294351210|gb|ADE71539.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium QM B1551]
 gi|294804279|gb|ADF41345.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           megaterium DSM 319]
          Length = 439

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 105/410 (25%), Positives = 197/410 (48%), Gaps = 13/410 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE       + EA+ + G+   T +QE ++   L+ + V+  +QTG+GKT A+ L L 
Sbjct: 4   TNFERFEFQPFLIEAIKQLGFYQPTEIQERLIPSVLKGESVIGQSQTGTGKTHAYLLPLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +  + +          +  APTRELA Q+ +E+  L   +     +         +++
Sbjct: 64  EKVDPKKEEV------QVVITAPTRELASQIYQEVLKLTKHSAEGEEISAKCFIGGTDKQ 117

Query: 120 DLQN----GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
              +       +VVGTP RL D +  K L +   KA+V+DEAD MLD+GF +D++ +  +
Sbjct: 118 RTIDKLKKQPQVVVGTPARLFDLVNEKALVVYTTKALVVDEADLMLDMGFLEDVDRLASN 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K +ML+FSATI   +    K Y ++    +++ +    + +++  V +   ++   +
Sbjct: 178 MPEKLQMLVFSATIPEKLKPFLKKYMENPKFTHVSPKQAAAAKLEHVLVPLRHRNKFKLL 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L  +    AIVF +T+         L     +V  + G+LS ++R   ++ + +   
Sbjct: 238 HDMLISYNPYLAIVFTNTKKMADEVADDLLSKGLKVGRIHGDLSPRDRKKMMKQINNLEF 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++  +     +  
Sbjct: 298 QYVVATDLAARGIDIEGISHVINFELPSDLDFYIHRVGRTARAGHSGIAATIFDVEDEDA 357

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +L +   +  V +     E +   D  R  +     D +  +  + + 
Sbjct: 358 VNKLEK-MGIEFVNKDLQKQEWVSIDDRNRRKKRVKKADEVGEEAHRFIQ 406


>gi|124430514|ref|NP_001074450.1| probable ATP-dependent RNA helicase DDX23 [Mus musculus]
 gi|148672229|gb|EDL04176.1| mCG18410, isoform CRA_a [Mus musculus]
          Length = 819

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 395 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 454

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 455 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 514

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 515 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 575 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 634

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 635 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 694

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 695 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 754

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 755 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 789


>gi|197100123|ref|NP_001125347.1| probable ATP-dependent RNA helicase DDX23 [Pongo abelii]
 gi|67460452|sp|Q5RC67|DDX23_PONAB RecName: Full=Probable ATP-dependent RNA helicase DDX23; AltName:
           Full=DEAD box protein 23
 gi|55727779|emb|CAH90640.1| hypothetical protein [Pongo abelii]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 200/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L  S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVPSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|328789292|ref|XP_001120427.2| PREDICTED: probable ATP-dependent RNA helicase DDX52-like, partial
           [Apis mellifera]
          Length = 512

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 145/373 (38%), Gaps = 16/373 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ +   +   GY   T +Q   +   L+ + +L  A TGSGKT AF L +   L    
Sbjct: 84  IPKKLINNVINCGYQYPTPIQMQAIPVMLQGRQILACAPTGSGKTAAFLLPIIHHLGGPE 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS---VHRERRDLQN 123
            +        A+ ++PTRELA Q  RE   L       + +          +  +   + 
Sbjct: 144 KK-----GFRAIILSPTRELAKQTYRECLRLSEGYNFKIHIISKINQALNKYGPKSSQKF 198

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK---- 179
              I          +     ++ ++++ +++DE D++ + G R   +     S       
Sbjct: 199 DILITTPKRIIYLLNQDPPAISFNNVEWLIVDEVDKLFEDGIRCFRDQFEKISKSCTSEK 258

Query: 180 -RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + +  +           +N +                       + A   +  A+ NI
Sbjct: 259 LHKAMFSATNTPIVTKWCRRNLKGLITVTVGHRNAATDLVEQELLFVGAERGKLVALRNI 318

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  ++         L      V  +  + +Q +R N ++  R+G+  V 
Sbjct: 319 IQKGILPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTQTQRDNVVRCFREGKIWVL 378

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM---QRR 355
           I T++ ARGID   + LVI+ +  S+  + +HR GRTGRAG KG ++    +      R 
Sbjct: 379 ICTELMARGIDFKGINLVINYDFPSSAISYIHRIGRTGRAGHKGKAITFFTEQDTTNLRS 438

Query: 356 AERLFREANVSVV 368
              + RE+  +V 
Sbjct: 439 IATIMRESGCNVP 451


>gi|229821387|ref|YP_002882913.1| DEAD/DEAH box helicase [Beutenbergia cavernae DSM 12333]
 gi|229567300|gb|ACQ81151.1| DEAD/DEAH box helicase domain protein [Beutenbergia cavernae DSM
           12333]
          Length = 580

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 123/378 (32%), Positives = 187/378 (49%), Gaps = 9/378 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F +      I  AL + G V+   +Q   L   L+  D++  A+TG+GKT+ FG+ L  
Sbjct: 48  TFADFGVSDAIVTALRDVGIVHPFPIQSLTLPVALQAHDIIGQAKTGTGKTLGFGIPLLE 107

Query: 61  TLLAEN----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            ++       D      AP AL + PTRELAVQV  +LE         V    GG +   
Sbjct: 108 RVVGPGEDGWDAVEAPGAPQALVVVPTRELAVQVAGDLETAARHRKARVVQLYGGRAYEP 167

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L  G  +VVGTPGR+ D +R + L++SH++ VVLDEADEMLDLGF  D+E +L ++
Sbjct: 168 QVAALGRGTEVVVGTPGRMIDLMRQRVLDLSHVRTVVLDEADEMLDLGFLPDVETLLAAT 227

Query: 177 PKKRRMLMFSATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           P +R  ++FSAT+  A+        ++       +   +      I          D+  
Sbjct: 228 PPQRHTMLFSATMPGAVVALARRFMSHPTHIRAHDPNDDGATLKAIRKVVYRAHALDKVE 287

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  +L+  G    IVF  T+ + ++    L +  F   A+ G+L Q  R  AL+  R G
Sbjct: 288 MLARLLQADGRGLTIVFTRTKRTAAKVADELVDRGFAAAAIHGDLGQGAREQALRAFRHG 347

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V +ATDVAARGID+ D+  V++ +   + +  LHR GRTGRAG  G +V  +  +  
Sbjct: 348 KVDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTFLHRIGRTGRAGNTGTAVTFVDWDDI 407

Query: 354 RRAERLFREANVSVVWEP 371
            R   + R   +     P
Sbjct: 408 PRWALIDRALELGTPNPP 425


>gi|73996620|ref|XP_863121.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 7 [Canis familiaris]
          Length = 810

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 119/396 (30%), Positives = 196/396 (49%), Gaps = 37/396 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   L  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLMPLFL 455

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G
Sbjct: 456 NQ-------GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 508

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-------- 176
             IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+          
Sbjct: 509 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 568

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  
Sbjct: 569 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 628

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 629 VEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGK 688

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRA
Sbjct: 689 GQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRA 748

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           G+ G+++  + +        +F E   +++  P  S
Sbjct: 749 GKSGVAITFLTKEDS----AVFYELKQAILESPVSS 780


>gi|297563397|ref|YP_003682371.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847845|gb|ADH69865.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 462

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 120/367 (32%), Positives = 190/367 (51%), Gaps = 7/367 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  ++P  +   L+ +G    + +Q A L   L  +DVL  ++TGSGKT+AFGLAL
Sbjct: 51  VESFEALDMPAPLKRTLTRQGLTVPSEIQAATLPNSLAGRDVLGRSRTGSGKTLAFGLAL 110

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L     R +    PLA+ +APTRELA QV   L       GV     +GG+ + R+ 
Sbjct: 111 LAQLD---GRKAEPRRPLAVVLAPTRELAQQVADALAPYARSVGVHATTVVGGMPISRQS 167

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R L+ G  +VV TPGRL D +      +  ++  VLDEAD+M D+GF   +  IL   P 
Sbjct: 168 RALRQGVELVVATPGRLRDLMERGDCVLDQVEVTVLDEADQMTDMGFMPQVTAILQQVPA 227

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             R ++FSAT+   + TL + +  D V  ++       S +++  + V+ +D+ +  V  
Sbjct: 228 DGRRMLFSATLDRNVDTLVRRFLNDPVVHSVDLSEGAVSTMEHHVMHVSHADKQD--VVT 285

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R  + L  +      L G  SQ +R+  L   + G     
Sbjct: 286 RIAARDGRVIMFLDTKRAVDRMAEHLLANGVLAAPLHGGRSQPQRTRTLDQFKRGAVTAL 345

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 346 VATNVAARGIHVDGLDLVVNIDPPTDHKDYLHRGGRTARAGEAGSVVTLVLPSQRRDMTR 405

Query: 359 LFREANV 365
           L   A +
Sbjct: 406 LMSRARI 412


>gi|158259303|dbj|BAF85610.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  R 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGRP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|194753610|ref|XP_001959103.1| GF12227 [Drosophila ananassae]
 gi|190620401|gb|EDV35925.1| GF12227 [Drosophila ananassae]
          Length = 522

 Score =  174 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 139/485 (28%), Positives = 217/485 (44%), Gaps = 38/485 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLAKQLTKLGLKGATPIQQNCIPAILSGRDCIGAAKTGSGKTFAFALPILEKLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQKDAV-RVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +           +  S+      +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFMKESSIFPISKDCLEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +    R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGRKGMS+ +   P++++     
Sbjct: 308 TDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLE-LLGA 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKMTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E + V L   R +  D +R  K   
Sbjct: 425 KDPDEMEALYRKKQKDKLKEIRRKRKQQQADSANNEESKVLLQDDRFKAVDSARFEKKHK 484

Query: 458 GSRDN 462
           G   N
Sbjct: 485 GRSQN 489


>gi|296804908|ref|XP_002843302.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
 gi|238845904|gb|EEQ35566.1| ATP-dependent RNA helicase has1 [Arthroderma otae CBS 113480]
          Length = 578

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 115/424 (27%), Positives = 203/424 (47%), Gaps = 16/424 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ +   +A++  G+  +T +Q+  + P L  +D+L +A+TGSGKT+AF +     L   
Sbjct: 98  SLSEPTVKAIAGMGFTTMTEIQQRGIPPSLAGRDILGAAKTGSGKTLAFLIPAVEIL--R 155

Query: 66  NDRFSPASAPL------ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + +F P +  +      AL I PTRELA+Q+      L         V IGG +   E  
Sbjct: 156 SLKFKPRNGMIFQLGTGALIITPTRELALQIFGVARELMEHHSQTYGVVIGGANRRAEAE 215

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G ++++GTPGRL DH+R        +LK +V+DEAD +L++GF D++  I+   PK
Sbjct: 216 KLNKGVNVLIGTPGRLLDHLRSTEGFVFKNLKTLVIDEADRILEVGFEDELRQIISILPK 275

Query: 179 KRRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             R  M  +            ++       + V+   E+     ++   ++     R   
Sbjct: 276 DDRQTMLFSATQTTKVEDLARISLKPGPLYINVDHKKEHSTVDGVEQGFIICEAHKRFLL 335

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + + L+ +  K  IVF S+  SV  ++++L      V++L G+L QQ+R+N      +  
Sbjct: 336 LFSFLKKNAKKKIIVFFSSCNSVKYYSELLNYIDLPVLSLHGKLKQQKRTNTFFEFCNSA 395

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQ 353
               I TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G+ G S+  +  +  
Sbjct: 396 QGTLICTDVAARGLDIPAVDYIVQLDPPDDPRDYIHRVGRTARGKGKVGRSLMFLQPSEV 455

Query: 354 RRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                L REA V VV    P+   I  +   ++++    +L+    +  +      A H 
Sbjct: 456 GFINHL-REARVPVVEFEFPTKHIINIQSQLEKLISQNYYLNQSAKEGYRSYLHAYASHS 514

Query: 413 PEKI 416
              +
Sbjct: 515 LRSV 518


>gi|169615935|ref|XP_001801383.1| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
 gi|182676441|sp|Q0UAT0|FAL1_PHANO RecName: Full=ATP-dependent RNA helicase FAL1
 gi|160703076|gb|EAT81633.2| hypothetical protein SNOG_11134 [Phaeosphaeria nodorum SN15]
          Length = 374

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 179/373 (47%), Gaps = 34/373 (9%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEAMHLKENLLRGIYAYGYESPSAVQSRAIVQVCKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +                                +  L     V    CIGG +V  + R 
Sbjct: 86  S-------------------------------VIMGLGDYMNVQCHACIGGTNVGEDIRK 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   ++K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 115 LDYGQHVVSGTPGRVADMIRRRNLRTRNIKMLVLDEADELLNRGFREQIYDVYRYLPPAT 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 175 QVVVVSATLPYDVLEMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLCDLY 234

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T  + E  F V ++ G++ Q+ER + +Q  R   +RV I
Sbjct: 235 DTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQRERDSIMQDFRQANSRVLI 294

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + LVI+ +L SN EN +HR GR+GR GRKG+++  + Q   R    +
Sbjct: 295 STDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRILRDI 354

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 355 ELYYSTQIDEMPM 367


>gi|261337192|ref|NP_001100263.2| probable ATP-dependent RNA helicase DDX23 [Rattus norvegicus]
 gi|149032134|gb|EDL87046.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 819

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 395 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 454

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 455 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 514

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 515 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 574

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 575 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 634

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 635 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 694

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 695 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 754

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 755 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 789


>gi|302786394|ref|XP_002974968.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
 gi|300157127|gb|EFJ23753.1| hypothetical protein SELMODRAFT_232454 [Selaginella moellendorffii]
          Length = 408

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 184/376 (48%), Gaps = 10/376 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           G+   + +Q       L  +D++  A TGSGKT+AFG+     +L    +    S     
Sbjct: 6   GFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSRC 65

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q+   LE   A  GV V    GG S   +   L++G  IVV TPGRL D
Sbjct: 66  LVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQD 125

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +      +  +  +VLDEAD MLDLGF   +  I+   P++R+ +M SAT   ++  LA
Sbjct: 126 FVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMLSATWPTSVQKLA 185

Query: 198 KNYQKDAVRVNIA------SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           + + +DA  V I       S N   + I       +   R   ++ +         +VF 
Sbjct: 186 QEFIQDASPVKITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNRVLVFV 245

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +    R    L +  ++V  + G+ SQQ R+ AL   +DG   + IATDVAARG+D+P
Sbjct: 246 LYKKEAVRVENFLQKQGWKVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAARGLDIP 305

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREANVSVV 368
           D+E VI+       E+ +HR GRTGRAG+KG +        + RA     + REA   V 
Sbjct: 306 DVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKARAGELVNILREARQIVP 365

Query: 369 WEPAPSVEAIRERDAQ 384
            E       +++++++
Sbjct: 366 EELLKFGAHVKKKESK 381


>gi|159467789|ref|XP_001692074.1| hypothetical protein CHLREDRAFT_128577 [Chlamydomonas reinhardtii]
 gi|158278801|gb|EDP04564.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 488

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 112/378 (29%), Positives = 177/378 (46%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +       G    T VQ   +   L+ +DV+  AQTGSGKT AF L +   L  + 
Sbjct: 112 LSEWLCGVCKSLGMSQPTDVQRGCIPAILKGRDVIGLAQTGSGKTAAFALPILQALAKDP 171

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELAVQ+  +   L A   +   V IGGV + ++ R+L    H
Sbjct: 172 ------YGVFALVLTPTRELAVQISEQFRALGAGMRLKELVVIGGVDMQQQARELAKRPH 225

Query: 127 IVVGTPGRLCDHIRGKGLNIS-HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +VV TPGRL D +           + +VLDEAD +LD  F DD+  IL + P  R+ L+F
Sbjct: 226 VVVATPGRLADWVMSGLAAGMARCRFLVLDEADRVLDSTFEDDLRRILKALPAARQTLLF 285

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA- 244
           SAT++ ++  L +    DA         R    +    + +    ++  + ++L      
Sbjct: 286 SATMTKSLIALQRQSLADAHVFQAYEGLRTADKLKEEYLFLPAKVKEVYLHHLLTVVLPA 345

Query: 245 ---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              ++AI+F  T       + +L E     VAL    SQ+ R  AL   +  +  + +AT
Sbjct: 346 RKVRSAIIFAGTCRGCHLLSLLLEELGLPAVALHSGKSQKGRLAALARFKSEQVPLLLAT 405

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+P ++ VI+ +L     + +HR GRT RAGR G SV ++ Q        +  
Sbjct: 406 DVASRGLDIPSVDAVINFDLPMLARDYVHRVGRTARAGRSGWSVSLVTQYDVGLVGAIEE 465

Query: 362 EANVSVVWEPAPSVEAIR 379
               ++        E ++
Sbjct: 466 LIGHTLEQHVLEEQEVLK 483


>gi|323448910|gb|EGB04803.1| hypothetical protein AURANDRAFT_59462 [Aureococcus anophagefferens]
          Length = 469

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 178/389 (45%), Gaps = 24/389 (6%)

Query: 4   FENIPQVIG-----EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           FE  P  I      + L    Y   T VQ+  L   L  +D++  AQTGSGKT  F   +
Sbjct: 10  FEEFPTEILGKRLCDNLQLCHYTRPTPVQKYSLPMGLAGRDMMACAQTGSGKTGGFLFPV 69

Query: 59  ASTLLAEN-----------DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV 107
              LL +            +     + P  L +APTREL  Q+  E       TGV   V
Sbjct: 70  LVALLRDGAAPADPNEQRGNSRRQRARPNGLILAPTRELVSQIFDEARKFCYCTGVRPVV 129

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           C GG     + ++L+ G  +++ TPGRL D +    + +S  + +VLDEAD MLD+GF  
Sbjct: 130 CYGGAETRGQLQELERGCDLLLATPGRLVDFLERGRVTLSACRFLVLDEADRMLDMGFEP 189

Query: 168 DIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
            I  I+      +    +  MFSAT    +  LA ++  + + + +        D+  R 
Sbjct: 190 QIRRIVCQEDMPQTGARQTFMFSATFPREMQILAGDFLDNYIFLTVGRVGSACKDVTQRF 249

Query: 224 VLVALSDRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             V   D+ +A +  I     +   ++F  T+         L    F   ++ G+ +Q++
Sbjct: 250 QFVDGRDKPDALMRYISSLEESGLTLIFVETKRDADYLEDTLCREGFPASSIHGDKTQRD 309

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL+  + GR  + + TDVAARG+D+P++  V++ +L     + +HR GRTGRAG  G
Sbjct: 310 RELALREFKSGRTPILVGTDVAARGLDIPNVLHVVNFDLPRAVSDYVHRIGRTGRAGNTG 369

Query: 343 MSVFVI---PQNMQRRAERLFREANVSVV 368
            ++  +    +N+ R    L  E    V 
Sbjct: 370 YAMSFLCDKNRNIVRELIDLLVENGQDVP 398


>gi|308454438|ref|XP_003089847.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
 gi|308268147|gb|EFP12100.1| hypothetical protein CRE_06212 [Caenorhabditis remanei]
          Length = 820

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 120/438 (27%), Positives = 208/438 (47%), Gaps = 21/438 (4%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +   L +  Y   TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +L +     
Sbjct: 157 MMNVLKKYEYTKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPMFRHIL-DQPELE 215

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P+A+ +APTRELA+Q  +E        G+ VA   GGV +  +  DL+ GA IVV 
Sbjct: 216 EGDGPIAVILAPTRELAMQTYKEANKFAKVLGLRVACTYGGVGISEQIADLKRGAEIVVC 275

Query: 131 TPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           TPGR+        GK  N+  +  +VLDEAD M D GF   I  ++++    ++ ++FSA
Sbjct: 276 TPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSA 335

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKN 246
           T    +  LA+   +  V + +  ++   SD+   AV+     +   ++ +L  Y+   +
Sbjct: 336 TFPRHMEALARKVLEKPVEILVGGKSVVCSDVTQNAVICEEHQKLLKLLELLGMYYEQGS 395

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +IVF   +         L +  +  VA   G + Q +R +++   + G  +V +AT VAA
Sbjct: 396 SIVFVDKQEKADDIVDQLMKTGYNSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAA 455

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN----------MQRR 355
           RG+D+ +L LV++ +  ++ E+ +HR GRTGRAG+KG +   +              ++ 
Sbjct: 456 RGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGKKGYAYTFVLPEQISQYGSQNYQEKM 515

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           A  + R A  +   +P   ++A+     +R  ++            K  +    K+D  +
Sbjct: 516 AGEICR-AFETAGCKPPQDLKAM----FERFKKEMAAEGKEVKLGGKGFEGHGYKYDEGE 570

Query: 416 IAAGFLRIHRAGLCAPEE 433
             A   +   A L    E
Sbjct: 571 AEADANKKKMARLVHGME 588


>gi|170090862|ref|XP_001876653.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648146|gb|EDR12389.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 422

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/418 (27%), Positives = 194/418 (46%), Gaps = 30/418 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +  AL+       T VQ A + P L   D + +A+TGSGKT+AF L +   LLA+ 
Sbjct: 7   ISDSLQSALTSMSIKTPTEVQAACIPPLLAGTDCIGNAKTGSGKTIAFALPILQRLLADP 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +   L A   +  AV +GG+ +  +  +L N  H
Sbjct: 67  ------YGIYALVLTPTRELAFQISEQFVVLGASLNLRTAVIVGGMDMMAQALELGNRPH 120

Query: 127 IVVGTPGRLCDHIRGK--GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           IV+ TPGRL DH+R      ++S ++ +VLDEAD +L   F  ++  + +  P+ R+  +
Sbjct: 121 IVIATPGRLVDHLRSSSGEWDLSRVRFLVLDEADRLLTRTFSPELSHLFNVLPQDRQTCL 180

Query: 185 FSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           F+AT++P+I            +      +           S +    +LV    R+  + 
Sbjct: 181 FTATLTPSIESLADATARPGKQKPFVHRMNERQVRRIETVSTLKQHYILVPSHVRETYLY 240

Query: 237 N--------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                              I+FC+   + +  T VL     +  AL   L+Q+ER ++L 
Sbjct: 241 YLLRNPPDDDDELEQPPPTIIFCARPRTAAYLTLVLKSLSIRSTALHSRLTQRERLSSLS 300

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           + R     V ++TDV +RG+D+ D+ +VI+ ++    E   HR GRT RAGR G+++  +
Sbjct: 301 LFRASVVPVLVSTDVGSRGLDIEDVAMVINWDMPEEAEEYTHRVGRTARAGRGGVAISFV 360

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRER-----DAQRILQDPLFLDSIQGDEK 401
            +  + R  ++ +     +      S + + E+      A+R+ +  L  D     E+
Sbjct: 361 TERDEDRVVKIEKRIKTKLEEMIL-SEDKVLEKLNAVSTAKRLAKMSLHDDKFGQREE 417


>gi|73996624|ref|XP_863165.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 9 [Canis familiaris]
          Length = 811

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 118/396 (29%), Positives = 197/396 (49%), Gaps = 36/396 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVKIEE 455

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +        P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G
Sbjct: 456 SDQ------GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-------- 176
             IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+          
Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  
Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGK 689

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRA
Sbjct: 690 GQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRA 749

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           G+ G+++  + +        +F E   +++  P  S
Sbjct: 750 GKSGVAITFLTKEDS----AVFYELKQAILESPVSS 781


>gi|54026546|ref|YP_120788.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
 gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
          Length = 1148

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 122/377 (32%), Positives = 175/377 (46%), Gaps = 10/377 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E G     ++QE  L   L  +D++  A+TG GKT  FG+ L  
Sbjct: 36  TFAELGVRDEIVRALAEIGIERTFAIQELTLPLALAGEDLIGQARTGMGKTFGFGVPLLH 95

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +   +   +P    P AL I PTREL +QV  +L                         
Sbjct: 96  RIATADSGTTPLDGTPRALVIVPTRELCIQVTDDLVRAGKYLRNHKGALKVTAIYGGRPY 155

Query: 120 DLQNG-----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           D Q         +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  DIE IL 
Sbjct: 156 DSQIAALREGVDVVVGTPGRLLDLAKQNHLILGKIGVLVLDEADEMLDLGFLPDIERILT 215

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+ ++FSAT+   I T       +   +R     ++  H             D+ 
Sbjct: 216 MVPAKRQTMLFSATMPGPIITLARTFLTRPTHIRAEEPHDSAVHDRTAQFVYRAHALDKA 275

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             I  +L+  G    ++F  T+ +  +    LAE  F V A+ G+L Q +R  AL   R 
Sbjct: 276 ELIARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFAVGAVHGDLGQVQREKALDKFRK 335

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V +I  + 
Sbjct: 336 GVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLIDWDE 395

Query: 353 QRRAERLFREANVSVVW 369
             R   +     + +  
Sbjct: 396 LNRWAAIDAALGLGIPE 412


>gi|68074371|ref|XP_679100.1| snrnp protein [Plasmodium berghei strain ANKA]
 gi|56499760|emb|CAH95922.1| snrnp protein, putative [Plasmodium berghei]
          Length = 782

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 25/380 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            N+   + +A+ +  Y   T +Q   +   L  +D++  A+TGSGKT AF L + S +  
Sbjct: 363 SNLSSDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQ 422

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL IAP+RELA+Q+  E     +         +GG +   +  +L+
Sbjct: 423 LPPLTYETSQDGPYALIIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELR 482

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+GTPGRL D +      ++    V++DEAD M+D+GF D + FILD+ P     
Sbjct: 483 RGVEIVIGTPGRLQDCLEKAYTVLNQCNYVIIDEADRMMDMGFEDAVHFILDNIPTSNLK 542

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL----------------- 225
               A            ++   +    ++      +   R  L                 
Sbjct: 543 SEDDALALQEEMMAKAGHRLYRLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRS 602

Query: 226 ------VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                      +    +  L        IVF + +       K +++  F+ +AL G   
Sbjct: 603 IEQKLEFITEGKKKQKLQELLEIYEPPIIVFVNQKKVADIIAKSISKMKFKAIALHGGKV 662

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ R  AL   ++G   + +ATDVA RGID+  ++LVI+ +L  +  +  HR GRTGRAG
Sbjct: 663 QEMREEALNAFKNGEFDILVATDVAGRGIDVHGVKLVINFDLPKDIASYTHRIGRTGRAG 722

Query: 340 RKGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 723 MKGLAISFVTEQDTHIFYDL 742


>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
 gi|74695973|sp|Q75F95|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
 gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
          Length = 734

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 223/458 (48%), Gaps = 16/458 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L+  GY   + +Q A +   L  KDV+  A TGSGKT AF + +   LL +
Sbjct: 225 SLSRPVLKGLAALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYK 284

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   L + PTRELA+QV    + L    +G+   + +GG+++ ++ + L+  
Sbjct: 285 PAKIA---STRVLVLTPTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLR 341

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGR+ DHIR     ++  ++ +V+DEAD ML+ GF+D++  I+   P KR+ L
Sbjct: 342 PDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQDELNEIMSLIPSKRQTL 401

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL---- 239
           +FSAT++  I  L     K  VR+ I    +  + +    V +   +     +       
Sbjct: 402 LFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLRKREHLKPALLYHLLRK 461

Query: 240 -RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G K  +VF + +    R   +L     +   L G L+Q++R  ++   +     V 
Sbjct: 462 LDSTGQKRIVVFVARKEVAHRLRVILGLLGMKAGELHGSLTQEQRLQSVNNFKSLDVPVL 521

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+A+RG+D+P +E+VI+ ++    E  LHR GRT RAGR+G SV ++ ++ Q R   
Sbjct: 522 VCTDLASRGLDIPKIEVVINYDMPKTYEIYLHRVGRTARAGREGKSVTLVGESTQER--S 579

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + ++A  SV           R  D +++ +       +Q  E  + ++L  +   ++I  
Sbjct: 580 IVKDAIKSVDGSKGSGRACGRVVDWKQVEE---IHKLVQAKEDVIGEILEEEKQEKEILR 636

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
             + I R G    +    ++    R  F+ +S      
Sbjct: 637 AEMEI-RKGENMLKFKEEINARPRRTWFQSESEKKNSS 673


>gi|37527225|ref|NP_930569.1| ATP-dependent RNA helicase SrmB [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786659|emb|CAE15723.1| ATP-dependent RNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 445

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 194/392 (49%), Gaps = 8/392 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +AL+++GY   T++Q A +   +  +DVL SA TG+GKT A+ L     LL  
Sbjct: 10  ELDERLLDALNDKGYSRPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAYLLPAMQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + +   A T + +A   GGV+            
Sbjct: 70  PRKKS--GPPRILILTPTRELAMQVADQAKEFAAHTHLDIATITGGVAYMNHAEIFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFANDIETIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--DRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +    A +   +   + ++L+   
Sbjct: 188 SATLEGEAIRDFAERLLEDPVEIDAEPSRRERKKIQQFYYRADNSAHKTALLCHLLKQPD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +I+F   R  V      L +   +   L GE+ Q +R+ A++++ DG   V +ATDV
Sbjct: 248 VTKSIIFVRKRERVHELADKLHQAGIKARFLEGEMVQAKRTEAVKLLNDGSVTVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D+  V + +L    +  LHR GRT RAGRKG ++ ++  +      ++ R  
Sbjct: 308 AARGLDIDDISHVFNFDLPRTADVYLHRIGRTARAGRKGTAITLVEAHDHPLLGKISRYL 367

Query: 364 NVS----VVWEPAPSVEAIRERDAQRILQDPL 391
           N      VV E  P+ +A  ++   +  +  L
Sbjct: 368 NEPLTSRVVDELRPTTKAPSDKARNKPSKKVL 399


>gi|310791197|gb|EFQ26726.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 608

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 183/394 (46%), Gaps = 27/394 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E +   GY   T +Q+  L    +  DV+  AQTGSGKT A+ + + + L+ + 
Sbjct: 125 LHPVMMENVELAGYDAPTPIQKYTLPAIHKGLDVVAVAQTGSGKTAAYLIPVLNKLMGKA 184

Query: 67  DRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + +                   PL + + PTRELA+Q+  E      +T +   V  GG
Sbjct: 185 KKLAAPRPNPAEVELGQLWVRAEPLVVIVCPTRELAIQIFNEARKFCYRTMLRPCVAYGG 244

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIE 170
             +  + + L  G  +++ +PGRLCD I+   + ++  L+ +V DEADEML   +R++ +
Sbjct: 245 GPIRDQIQQLGKGCDVLIASPGRLCDFIQRPDVLSLRRLRYMVFDEADEMLHDDWREEFD 304

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKD----AVRVNIASENRQHSDIDYRAVLV 226
            I+    ++   + +    +     L    ++     +VR+NI      H++I  R   V
Sbjct: 305 VIMTGGEQQEGNIKYMLFSATFPKPLRDLAKEHLSSSSVRINIGRIGSTHANIMQRVFEV 364

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           A  D+  A+   +    A   I+F +++ +       L    F   ++  + +Q ER  +
Sbjct: 365 APFDKKTALKEHINSLPACRTIIFVNSKRTADDLDDFLYNIGFPCTSMHSDRTQLEREAS 424

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGRKG 342
           ++  R G++ + IAT ++ARGID+ ++  VI+ +L S      E   HR GRTGR G++G
Sbjct: 425 MRAFRAGKSPILIATGISARGIDVKNVNHVINYDLPSMDHGGIEEYTHRIGRTGRMGQRG 484

Query: 343 MSVFVIPQNMQRRAERLFR---EANVSVVWEPAP 373
           ++     +  +     L R   E    +     P
Sbjct: 485 IATSFYTERDEPITSVLVRTLLETKQEIPPFLEP 518


>gi|143455388|sp|Q0D622|RH32_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 32
 gi|34395216|dbj|BAC83715.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|50508742|dbj|BAD31318.1| putative RNA helicase [Oryza sativa Japonica Group]
          Length = 773

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 12/397 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P      + L + GY  ++ +Q A L   L  +DVL +A+TGSGKT+AF + +   
Sbjct: 82  FDELPLSNKTKDGLRKAGYTEMSEIQRAALPHALCGRDVLGAAKTGSGKTLAFVIPVLEK 141

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  R+ P      + ++P ++LA Q+    + +    G   A  +G      E + +
Sbjct: 142 LYRE--RWGPEDGVGCIVLSPNKDLAGQIFNVFQKVGKLHGFSAACIVGNRKGLDEEKAV 199

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH--LKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            N  +I+V TPGRL  H+            + +V+DEAD++LD  F++ ++ ++   PK 
Sbjct: 200 INNMNILVCTPGRLLQHMGETTNFDCSQIQQILVIDEADQVLDKNFQEQVDNVVSQLPKV 259

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT + ++           + + V+  +       ++  A++V L  + N + +
Sbjct: 260 RQTLLFSATQTKSVKDLARVSLKDPEYISVHEEATTATPDTLEQYAMIVPLEQKLNMLWS 319

Query: 238 ILRYHGAKNAIVFCST-RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++ H     +VF S+ +     +           +       + E   A+         
Sbjct: 320 FIKRHLKSRILVFLSSVKQVKFVYEVFKKLRPGISLRCMHGRMKYEVQQAIVAEFKEGHS 379

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V  +TD+ ARG+D+ D++ V+  +   N    +HR GRT R  ++G ++  +    ++  
Sbjct: 380 VLFSTDIFARGLDIEDVDWVVQVDCPENIALYIHRVGRTARYNKRGKALIFLCPEEEKML 439

Query: 357 ERL---FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           E+L     +  + +       ++ I +  A  ++Q P
Sbjct: 440 EKLKAAESKIPIHIKKPNTEQLQQISQNIASVLVQYP 476


>gi|154344931|ref|XP_001568407.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134065744|emb|CAM43518.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 860

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 177/403 (43%), Gaps = 25/403 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +   +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 404 VEDFADLLVEPALAANIERCGYKKPTPVQRYGIPVALAGSDLMACAQTGSGKTAAFLIPV 463

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+AL +APTRELAVQ+  E+  L   T +   V  GG    +
Sbjct: 464 VQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQ 523

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE------ 170
                     I+V  PGRL D    + L+ S +K ++LDEAD ML++GF + IE      
Sbjct: 524 RFEQ-----DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASR 578

Query: 171 -FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              + +   ++  +  +      +    +  ++    + +        +I      V  +
Sbjct: 579 YTDMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDN 638

Query: 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ + ++ I+  +  +   ++F  T+       + L         + G+  QQ+R  AL+
Sbjct: 639 EKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALE 698

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +ATDVA+RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++    
Sbjct: 699 DFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFY 758

Query: 349 PQNMQR---RAERLFREANVSVV-----WEPAPSVEAIRERDA 383
            +N +R      + F E    +             EA+  RD 
Sbjct: 759 NRNNRRLALDLHKYFSEHGQEIPKWFQQEAELVEGEALLSRDI 801


>gi|72548684|ref|XP_843415.1| ATP-dependent RNA helicase [Leishmania major strain Friedlin]
 gi|323363932|emb|CBZ12938.1| putative ATP-dependent RNA helicase [Leishmania major strain
           Friedlin]
          Length = 923

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 177/403 (43%), Gaps = 25/403 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +   +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 469 VEDFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPV 528

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+AL +APTRELAVQ+  E+  L   T +   V  GG    +
Sbjct: 529 VQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQ 588

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE------ 170
                     I+V  PGRL D    + L+ S +K ++LDEAD ML++GF + IE      
Sbjct: 589 RFEQ-----DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASR 643

Query: 171 -FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              + +   ++  +  +      +    +  ++    + +        +I      V  +
Sbjct: 644 YTDMPTVDDRQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDN 703

Query: 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ + ++ I+  +  +   ++F  T+       + L         + G+  QQ+R  AL+
Sbjct: 704 EKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALE 763

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +ATDVA+RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++    
Sbjct: 764 DFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFY 823

Query: 349 PQNMQR---RAERLFREANVSVV-----WEPAPSVEAIRERDA 383
            +N +R      + F E    +             EA+  RD 
Sbjct: 824 NRNNRRLALDLHKYFSEHGQEIPKWFQQEAELVEGEALLSRDM 866


>gi|255975964|ref|ZP_05426550.1| helicase [Enterococcus faecalis T2]
 gi|255968836|gb|EET99458.1| helicase [Enterococcus faecalis T2]
          Length = 449

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 4   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 63  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQL 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 117 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 177 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 357 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 401 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 446


>gi|225011120|ref|ZP_03701583.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
 gi|225004754|gb|EEG42713.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
           MS024-3C]
          Length = 455

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/377 (32%), Positives = 178/377 (47%), Gaps = 10/377 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE  N+   +   LSE GY   T +Q A     L  +DVL  AQTG+GKT+A+ L + 
Sbjct: 7   TSFEEFNLNTPLKNNLSEVGYEVPTPIQGATYASVLSGQDVLGLAQTGTGKTLAYLLPIL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L     +F+      AL I PTREL  QV  E E +   T + V    GG S+ ++R 
Sbjct: 67  NDL-----KFAKEKTVRALVIVPTRELVSQVVEEAEKICQNTFIRVCGVHGGNSMKKDRD 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L   A I+V TPGRL D    + +  + +K VV+DE D MLDLGFR  +  I D  PKK
Sbjct: 122 ALAQSADIIVATPGRLYDLFLARVIKYAAIKKVVIDEVDVMLDLGFRFQLTNIFDLLPKK 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI- 238
           R+ +MFSAT++  I +L  ++     R+ IA       +I   A  V        ++   
Sbjct: 182 RQHIMFSATMTDEIESLISDFFIAPKRIYIAMSGTPLKNIAQTAYAVPNYYTKVNLLQHL 241

Query: 239 -LRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    K  +VF S +    R  +         +  +    +Q  R+  L     GR R
Sbjct: 242 LEQEETFKKVLVFVSNKKIADRIYEQLEPVFEKNIGIVHANKTQNHRNRVLSAFDAGRIR 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IATD+ ARG+D+  +  VI+ +    PEN +HR GRTGRA   G S+ +         
Sbjct: 302 IVIATDLVARGLDIDQISHVINFDTPKYPENYMHRIGRTGRANADGNSILLHNPEELAYK 361

Query: 357 ERLFREANVSVVWEPAP 373
           E +     ++V     P
Sbjct: 362 EAIETLMQIAVPDIEFP 378


>gi|109089503|ref|XP_001111043.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Macaca mulatta]
 gi|296220521|ref|XP_002756344.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Callithrix
           jacchus]
          Length = 737

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|152983852|ref|YP_001346629.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
 gi|150959010|gb|ABR81035.1| ATP-dependent RNA helicase RhlB [Pseudomonas aeruginosa PA7]
          Length = 529

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 115/373 (30%), Positives = 185/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ + LL  
Sbjct: 147 NLAPSLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQT 206

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                     P AL IAPTREL VQ+ ++   L   TG  V+    G     + ++    
Sbjct: 207 PPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEAR 266

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K    
Sbjct: 267 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQ 326

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  +  LAK +  D   V I  EN     ++     VA SD+   + N++  
Sbjct: 327 TLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVAQ 386

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  +  +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +AT
Sbjct: 387 NNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVAT 446

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +  
Sbjct: 447 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISFAGEDDAFALPPIEE 506

Query: 362 EANVSVVWEPAPS 374
                +  E  P+
Sbjct: 507 LLGRKITCEMPPA 519


>gi|332218196|ref|XP_003258245.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 1 [Nomascus
           leucogenys]
          Length = 737

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|330947845|ref|XP_003306982.1| hypothetical protein PTT_20301 [Pyrenophora teres f. teres 0-1]
 gi|311315216|gb|EFQ84920.1| hypothetical protein PTT_20301 [Pyrenophora teres f. teres 0-1]
          Length = 808

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 190/422 (45%), Gaps = 10/422 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P      + L    +  +T VQ   +   L+  D+L +A+TGSGKT++F + + 
Sbjct: 49  KDFTDLPLSDPTKQGLKSSHFAVMTDVQAKSIPLALQGHDILGAAKTGSGKTLSFIIPVL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L        P +   AL ++PTRELA+Q+   L  +     +  A  + G    ++ R
Sbjct: 109 ENL-YRLQHIGPDAGLGALILSPTRELAIQIFDVLRKIGRHGHMFAAGLLIGGKSLKDER 167

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +     +I+V TPGR+  H+      ++  LK +VLDEAD +LD+GF+ D++ I++  PK
Sbjct: 168 EALTKMNILVATPGRMLQHLSQTAAFSVDDLKILVLDEADRILDMGFQRDVDAIVEYLPK 227

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT S  ++          + V V+   ++     +    ++    ++ + + 
Sbjct: 228 ERQTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKGLTQNYIICPQEEKLDTLW 287

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++       + F S+  +V    +        +  L     Q++ +           +
Sbjct: 288 SFIQASKKSKILCFFSSAKTVRFVYESFRHMQPGIPLLHIHGRQKQGARLDTTAKFSAAK 347

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G  V  + P   +
Sbjct: 348 HSCLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEE 407

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              +RL  +   V  +       ++I+++      QDP      Q      V  +  + D
Sbjct: 408 GMLKRLEAKRVPVEAINVRQKKRQSIKDQLQNMCFQDPALKYLGQKAFMTHVKSIYLQKD 467

Query: 413 PE 414
            E
Sbjct: 468 KE 469


>gi|70826664|gb|AAZ13600.1| eukaryotic initiation factor 4A-like protein [Plasmodium
           falciparum]
          Length = 670

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 185/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR------ 68
           + +  Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L  +        
Sbjct: 106 IKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYE 165

Query: 69  ---------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                    F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 166 QNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLS 225

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--------- 170
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I          
Sbjct: 226 NLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMP 285

Query: 171 ---------------FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                              +   KR+ +MFSAT    I  LAK Y      + +      
Sbjct: 286 GNDNDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGST 345

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V V   ++ N ++N+L  +     I+F  T+       + L+      V + 
Sbjct: 346 NEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIH 405

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 406 GDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 465

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   + ++ +   + L     E N  +  
Sbjct: 466 GRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIPR 502


>gi|13129006|ref|NP_076950.1| ATP-dependent RNA helicase DDX50 [Homo sapiens]
 gi|297686803|ref|XP_002820928.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Pongo abelii]
 gi|55976580|sp|Q9BQ39|DDX50_HUMAN RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540304|gb|AAK29402.1|AF334103_1 nucleolar protein GU2 [Homo sapiens]
 gi|12653021|gb|AAH00272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|55664207|emb|CAH72376.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|119574689|gb|EAW54304.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Homo sapiens]
 gi|123983644|gb|ABM83473.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
 gi|123998165|gb|ABM86684.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [synthetic construct]
          Length = 737

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|291446333|ref|ZP_06585723.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291349280|gb|EFE76184.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 507

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 195/382 (51%), Gaps = 13/382 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +  P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 132 VETFGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 191

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+ 
Sbjct: 192 LAR---TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQA 248

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 249 SALRGGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNP 308

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y KD V  ++       + +++  + V  +D+       
Sbjct: 309 DGQRMLFSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTE- 367

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V 
Sbjct: 368 -IAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVL 426

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 427 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTR 486

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           L  +A ++      P V  +R 
Sbjct: 487 LMADAGIT------PQVTQVRS 502


>gi|239942861|ref|ZP_04694798.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 457

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 124/382 (32%), Positives = 195/382 (51%), Gaps = 13/382 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +  P  + +AL+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 82  VETFGELEMPAPLKQALATEGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 141

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R + A  PLAL + PTRELA QV   L        + +A  +GG+S+ R+ 
Sbjct: 142 LAR---TAGRRADAKRPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQA 198

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I  +   +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 199 SALRGGAEVVVATPGRLKDLIERRDCKLDRVTVTVLDEADQMADMGFMPQVTELLDQVNP 258

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y KD V  ++       + +++  + V  +D+       
Sbjct: 259 DGQRMLFSATLDRNVDLLVRTYLKDPVVHSVDPAAGAVTTMEHHVLYVQGADKYATTTE- 317

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V + T  L     +  AL G  SQ +R+  L   + G+  V 
Sbjct: 318 -IAARDGRVIMFLDTKHAVDKLTDHLLHSGVRAAALHGGKSQPQRTRTLDRFKTGQVTVL 376

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 377 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPNQRREMTR 436

Query: 359 LFREANVSVVWEPAPSVEAIRE 380
           L  +A ++      P V  +R 
Sbjct: 437 LMADAGIT------PQVTQVRS 452


>gi|152981080|ref|YP_001353634.1| ATP-dependent RNA helicase DbpA [Janthinobacterium sp. Marseille]
 gi|151281157|gb|ABR89567.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 478

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 135/400 (33%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ L   L    
Sbjct: 26  LSPAMLSNLDSLGYREMTPIQAQSLPVILELRDLIAQAKTGSGKTAAFGIGLLQKLNPT- 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL I PTRELA QV  EL  L   T  + V    GG  +  +   L++GA
Sbjct: 85  -----WFAVQALVICPTRELADQVSNELRRLARATENIKVLTLCGGAPMRPQIASLEHGA 139

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DHI  + +N+S ++ +VLDEAD M+D+GF ++I  I+ + P +R+ L+F
Sbjct: 140 HIVVGTPGRIRDHISRETINLSKVQTLVLDEADRMVDMGFYEEIAGIVSACPTRRQTLLF 199

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + +D V +         S I+ R   V   DR+ A+  +L+++   
Sbjct: 200 SATYPDDIRRASAEFLRDPVEI-KVEAQHDDSQIEQRFYAVDYDDRNAAVATLLKHYRPV 258

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAA
Sbjct: 259 STLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAA 318

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +    N 
Sbjct: 319 RGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQNK 378

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     +E     D    L  P+    I G +K  + 
Sbjct: 379 PVQWFDLKDLEVAEGGD----LHAPMVTLCIMGGKKDKLR 414



 Score = 54.6 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
             D         +  G K K     L+  L    G+++  +G I V   +T+V +     
Sbjct: 393 GGDLHAPMVTLCIMGGKKDKLRPGDLLGALTGDVGLSKDQVGKINVFEFMTYVALDRKVA 452

Query: 519 D----LLRRTVKLDKGIQLKYLG 537
           D     L       +  +++++ 
Sbjct: 453 DQAYARLSNGNIKGRNFKMRFID 475


>gi|86171847|ref|XP_966291.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|46361260|emb|CAG25121.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           falciparum 3D7]
 gi|223673362|gb|ACN12798.1| DEAD-box helicase 9 [Plasmodium falciparum]
          Length = 601

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 200/419 (47%), Gaps = 10/419 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  NI   + + L E  +V LT +Q   +   L  KD+L +A+TGSGKT+AF +   + 
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 209

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N +F P +    L I+PTREL +Q+ +  + L         + IGG+S + E++  
Sbjct: 210 LY--NIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 267

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I++ TPGRL DH++        +L  +++DEAD +L +GF ++I  I+   PKKR
Sbjct: 268 IHGINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKR 327

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT +  + +L +   +  + + + ++      +     LV    R   +   L+
Sbjct: 328 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 387

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF +   SV  +  +L         + G+  Q +R  +       +  + + 
Sbjct: 388 KNMSKKIMVFFNNCMSVQFYNDLLNYIDIPTYCIHGKKKQNKRLKSFHDFSAAKCAILLC 447

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK--GMSVFVIPQNMQRRAER 358
           T+VAARG+D+P++  +I  +   + +  +HR GRT R G+   G ++  + ++  +    
Sbjct: 448 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GQDSNGSAIIFLMKHELKFLNY 506

Query: 359 LFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L +  N+ +        + I  +   Q I+     L  +  +  K        +  + +
Sbjct: 507 L-KFYNIPINQFAYDPNKLINIQSHIQSIVTKNFHLHKMAREAFKSYLNGYITYALKDV 564


>gi|332669674|ref|YP_004452682.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
           ATCC 484]
 gi|332338712|gb|AEE45295.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
          Length = 590

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 119/372 (31%), Positives = 188/372 (50%), Gaps = 8/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   I +AL++ G  +   +Q   L   L   D++  A+TG+GKT+ FG+ L + ++A 
Sbjct: 52  DVRPEIVQALADAGISHPFPIQAMTLPVALSRHDIIGQAKTGTGKTLGFGVPLLNAVVAP 111

Query: 66  N----DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                D       P AL + PTRELAVQV  +L    A+  V V    GG +   +   L
Sbjct: 112 GEDGYDALPAPGKPQALVVVPTRELAVQVAGDLATASARRSVRVVQVYGGRAYEPQIDAL 171

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G  +VVGTPGR+ D ++ + L+++ ++ VVLDEADEMLDLGF  D+E +L ++P  R 
Sbjct: 172 NKGVDVVVGTPGRMIDLLKQRHLDLTRVRTVVLDEADEMLDLGFLPDVETLLAATPASRH 231

Query: 182 MLMFSATISP----AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            ++FSAT+                           ++   +I          D+   +  
Sbjct: 232 TMLFSATMPGAVVAMARRYMTQPTHIRAADPDDDGSQTVKNIKQVVYRAHALDKVELLAR 291

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+ +G    IVF  T+ + ++    L E  F   AL G+L Q  R  AL+  R G+  V
Sbjct: 292 MLQANGRGLTIVFARTKRTAAKVADELVERGFAAGALHGDLGQGAREQALRAFRHGKVDV 351

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  V++ +   + +  LHR+GRTGRAG KG +V  +  +   R  
Sbjct: 352 LVATDVAARGIDVEDVTHVVNYQCPEDEKTYLHRTGRTGRAGNKGTAVTFVDWDDMPRWS 411

Query: 358 RLFREANVSVVW 369
            + +   + +  
Sbjct: 412 LIDKALGLGIPE 423


>gi|321466548|gb|EFX77543.1| hypothetical protein DAPPUDRAFT_321368 [Daphnia pulex]
          Length = 581

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 172/448 (38%), Gaps = 26/448 (5%)

Query: 1   MKIFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +       + + + +  RGY   T +Q   +   L+++++L  A TGSGKT AF
Sbjct: 131 VETFEELAQQFSIKEELIKNIQTRGYEVPTPIQMQAIPLMLKKREILACAPTGSGKTAAF 190

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L A   +        A+ ++PTRELA Q  RE   L    G+   V       
Sbjct: 191 LVPIIHCLGAPQKK-----GFRAVIVSPTRELANQTHRECVKLTEGIGLRCHVIDNVGKA 245

Query: 115 HRER---RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE- 170
            ++       +    I                +++ +++ +++DE+D++ + G +   + 
Sbjct: 246 TQKFGPKSSQRFDILITTPNRLVFLLSQEPPAISLKNVEWLIVDESDKLFEEGRQGFRDQ 305

Query: 171 ----FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
               +    S + RR    +            N     +       +             
Sbjct: 306 LGAIYRACDSNQIRRAFFSATFAFDVQEWCKLNLDNVVMLTIGQKNSASEKVEQQLIFAG 365

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           +   +  A  N++        +VF  T+         L      V  +  E SQ +R N 
Sbjct: 366 SEGGKLMAFRNLIVEGLNPPVLVFVQTKERAKELYTELVYDGINVDVIHAERSQLQRDNV 425

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  R G+  V I T++  RGID   + LV++ +   +  + +HR GRTGRAGR G ++ 
Sbjct: 426 VKSFRSGQIWVLICTELMGRGIDFKGVNLVVNYDFPPSAISYIHRIGRTGRAGRPGKAIT 485

Query: 347 VIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              ++     R+   + R +   V       ++     DA+++ +      SI     + 
Sbjct: 486 FFTESDAVYLRKIATVMRNSGCEVPEYML-QMKKTSRSDAKKMARKVPTRKSIS---TEP 541

Query: 404 VDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
           +   + +   E+I A   +  + G   P
Sbjct: 542 LPDKIKRKKRERIIANVRKNKQNGQQGP 569


>gi|318062704|ref|ZP_07981425.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actG]
          Length = 633

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 210/452 (46%), Gaps = 9/452 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 58  LPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASL---A 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G  
Sbjct: 115 GGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGVD 174

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 175 ILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLFS 234

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  D +   + +     + + +  ++V   D+    V          
Sbjct: 235 ATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAP--VTAAIASRKGR 292

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 293 TIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAAR 352

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 353 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 412

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A+ + +   I       +     E        A+ + E +     R  R 
Sbjct: 413 AARHQIGS--AVFDAELAEITGARSMTEV--QAESAGQSAKQAEREVEDLTRELERAKRR 468

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                 E   +   + R+R  +      V  G
Sbjct: 469 ASEYRAEADRLVARAARERGEEPPAPAAVAEG 500


>gi|227505531|ref|ZP_03935580.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227197895|gb|EEI77943.1| ATP-dependent RNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 442

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 179/365 (49%), Gaps = 3/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL+ RG V   ++QE  L   L  +D++  A+TG GKT+ FG+ +   +  + D  
Sbjct: 22  EIVDALASRGIVRTFAIQELTLPIALGGQDLIGQARTGMGKTLGFGVPVLDRVFDDADIE 81

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELAVQVG +L        + +A   GG     + + L+ G  ++V
Sbjct: 82  ELDGTPRALIVVPTRELAVQVGEDLTLASQNLPLRLATIYGGRPYEEQIKLLEKGVDVIV 141

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM---FS 186
           GTPGRL D  +   L + H+  +VLDEADEMLDLGF  DIE IL+     +   M    +
Sbjct: 142 GTPGRLLDLAQQGHLQLDHVAILVLDEADEMLDLGFLPDIEKILELLHGNKHQTMLFSAT 201

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
                         +   +R     EN+ H             D+   I   L+  G   
Sbjct: 202 MPGPILTLARTFMNRPIHIRAESGDENQTHESTRKVTFQAHRMDKLAIISRALQAKGRGK 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ S +     LA   F+V A+ G+L Q  R  +L   R+G+  + +ATDVAAR
Sbjct: 262 TIIFARTKRSAAEVADELARRGFRVGAVHGDLGQAAREKSLNAFREGKVEILVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++  +   + + +  E  + 
Sbjct: 322 GIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAVTLVGYDELGKWQVINDELGLG 381

Query: 367 VVWEP 371
               P
Sbjct: 382 EPEPP 386


>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 433

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 207/392 (52%), Gaps = 12/392 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+++   + + EA     +   T +Q ++L      +D++  A+TGSGKT AF L + 
Sbjct: 39  QSFKSLGACETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPIL 98

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL +     P     AL + PTRELA Q+ + ++ L    G      +GGV    +  
Sbjct: 99  QGLLRK-----PVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAI 153

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+V+ TPGRL DH    KG N++ ++ +VLDEAD ML + F +++  ILD+ P+
Sbjct: 154 ALGRNPHVVIATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPE 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT++  +  L +   KD V+V ++++ +    +    + +    +D  +  +
Sbjct: 214 QRQTLLFSATMTTQVAKLERASLKDPVKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYL 273

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  H  ++ +VF +T  +V R   +L    F  V L G++ Q +R  ALQ    G   + 
Sbjct: 274 INEHAGQSILVFGATCNNVQRLALMLRNLGFPAVCLHGQMDQSKRLGALQKFSSGDRTIL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVA+RG+DLP ++LVI+ +L  + +  +HR GRT RAG+ G ++ ++ Q      +R
Sbjct: 334 LCTDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQR 393

Query: 359 LFREANVSVVW--EPAPSVEAIRER--DAQRI 386
           L       +        +V  + ER  DAQR+
Sbjct: 394 LEALLGKKLDEWKTDEKTVLVLLERVSDAQRM 425


>gi|257077167|ref|ZP_05571528.1| DEAD box protein [Ferroplasma acidarmanus fer1]
          Length = 430

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 196/363 (53%), Gaps = 6/363 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + + ++L    +   T +QE  +   L  KDV++ ++TGSGKT A+ L + +++   
Sbjct: 2   DISENLKKSLGLMKFTEPTEIQEKAIPVVLTGKDVIIRSKTGSGKTAAYLLPVLNSVEKL 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +     +  A+ I PTRELA+Q  R    L   +G+   +  GG S+ R+  +L  G+
Sbjct: 62  KGK-----SVKAIIILPTRELALQTHRVASRLGKISGIKSTIVYGGASIIRQVEEL-PGS 115

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGR+ D    K L + H+K +VLDEAD MLD+GF DDI+ I+  +P+ R+ ++ 
Sbjct: 116 DIVIGTPGRILDLYNQKYLKLDHVKYLVLDEADLMLDMGFIDDIKKIISFTPEGRQTILL 175

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   + T+A ++  +   V+   +    S I +   +    D+ + +++ +  + ++
Sbjct: 176 SATLPAEVKTIANHFMNNPEFVDAGGDEAIPSSIKHLYTVSEKFDKFSTLMSYIHSYNSR 235

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF  T+ S      +L+   F  V + G + Q  R  ++   R   + + +AT+VAA
Sbjct: 236 KAIVFVKTQRSGDLLNLILSRSGFNNVLIHGGMKQHARERSIADFRHIDSGILVATNVAA 295

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+P++  +I+ +   + E   HR GR+GR G+ G ++ +   + +   + + R   +
Sbjct: 296 RGLDIPNITDIINFDAPDSTETYAHRVGRSGRMGKDGRAMTIFDPSQKSLIQSIQRRNRI 355

Query: 366 SVV 368
            + 
Sbjct: 356 KME 358


>gi|41409410|ref|NP_962246.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398241|gb|AAS05862.1| RhlE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 505

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 183/374 (48%), Gaps = 9/374 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + A    
Sbjct: 19  DEIVRALDEKGIQHPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAGTAP 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERRDLQ 122
            +    P AL + PTREL +QV  +L              + V    GG     +   L+
Sbjct: 79  RALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALR 138

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ 
Sbjct: 139 AGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDRQS 198

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R         H             D+   +  +L+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHALDKVELVSRVLQ 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +A
Sbjct: 259 AESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  +   R   + 
Sbjct: 319 TDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDELARWALID 378

Query: 361 REANVSVVWEPAPS 374
           +   + V  EPA +
Sbjct: 379 KALGLDVP-EPAET 391


>gi|268532748|ref|XP_002631502.1| Hypothetical protein CBG20666 [Caenorhabditis briggsae]
 gi|187022955|emb|CAP37633.1| hypothetical protein CBG_20666 [Caenorhabditis briggsae AF16]
          Length = 502

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 178/383 (46%), Gaps = 16/383 (4%)

Query: 1   MKIFEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K F+      Q I   + + G+   + +Q  +    L  +D +  +QTGSGKT+AF L 
Sbjct: 82  VKTFKEAFGHNQSIMNEIQKNGFEKPSPIQSQMWPILLSGQDCIGVSQTGSGKTLAFLLP 141

Query: 58  LASTL---LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
               +   LA+ D+     +P  L ++PTRELA Q+  E++  Y+  G       GG S 
Sbjct: 142 AFLHIDAQLAQYDKNEKKPSPSVLVLSPTRELAQQIEGEVKK-YSYNGYKSVCLYGGGSR 200

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             + +  + G  IV+ TPGRL D      ++++ +  VVLDEAD MLD+GF   I  IL 
Sbjct: 201 SEQVQSCKGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEAAIRRILF 260

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
                R + + SAT   A+  L   Y K A+     + +        +       +    
Sbjct: 261 EIRPDRLVALTSATWPEAVRNLTDRYTKQAIMAVNGTLDLASCKSVTQYFEFIPQENRFD 320

Query: 235 IVN------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
            V         ++  +   I+F  ++      +            L G  SQ +R  +L+
Sbjct: 321 RVCEIVNFLNQQFGNSYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDRELSLK 380

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           M++ G  ++ +ATD+A+RGID+PD+  V++ +   + E  +HR GRTGRAGRKG S+  +
Sbjct: 381 MLKTGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGESMSFM 440

Query: 349 PQNMQRRAE---RLFREANVSVV 368
             N +   +    +  ++   V 
Sbjct: 441 WWNDRSNFDGLISILEKSGQEVP 463


>gi|21233204|ref|NP_639121.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770146|ref|YP_244908.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993353|ref|YP_001905363.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|32363344|sp|Q8P4D4|RHLB_XANCP RecName: Full=ATP-dependent RNA helicase rhlB
 gi|81303902|sp|Q4UPY5|RHLB_XANC8 RecName: Full=ATP-dependent RNA helicase rhlB
 gi|226739237|sp|B0RWT6|RHLB_XANCB RecName: Full=ATP-dependent RNA helicase rhlB
 gi|21115552|gb|AAM43476.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575478|gb|AAY50888.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735113|emb|CAP53325.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
          Length = 573

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 187/371 (50%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPA 372
                +  EP 
Sbjct: 375 YIEQKIPVEPV 385


>gi|313500476|gb|ADR61842.1| RhlB [Pseudomonas putida BIRD-1]
          Length = 480

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 182/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 98  LSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTP 157

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V++   G     + +      
Sbjct: 158 PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARH 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 218 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 277

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 278 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 337

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 338 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATD 397

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 398 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEAL 457

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 458 LGRKIKCEMPP 468


>gi|146101459|ref|XP_001469120.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134073489|emb|CAM72220.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 924

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 178/403 (44%), Gaps = 25/403 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +   +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 471 VEDFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPV 530

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+AL +APTRELAVQ+  E+  L   T +   V  GG    +
Sbjct: 531 VQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQ 590

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE------ 170
                     I+V  PGRL D    + L+ S +K ++LDEAD ML++GF + IE      
Sbjct: 591 RFEQ-----DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASR 645

Query: 171 -FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              + +  +++  +  +      +    +  ++    + +        +I      V  +
Sbjct: 646 YTDMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDN 705

Query: 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ + ++ I+  +  +   ++F  T+       + L         + G+  QQ+R  AL+
Sbjct: 706 EKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALE 765

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +ATDVA+RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++    
Sbjct: 766 DFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFY 825

Query: 349 PQNMQR---RAERLFREANVSVV-----WEPAPSVEAIRERDA 383
            +N +R      + F E    +             EA+  RD 
Sbjct: 826 NRNNRRLALDLHKYFSEHGQEIPKWFQQEAELVEGEALLSRDM 868


>gi|196006399|ref|XP_002113066.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
 gi|190585107|gb|EDV25176.1| hypothetical protein TRIADDRAFT_26030 [Trichoplax adhaerens]
          Length = 491

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 9/367 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P       AL E  Y   T +Q+  +   L  +DVL +A+TGSGKT+AF + +   
Sbjct: 9   FTDFPLSSRTQIALKEAKYEIPTKIQKESIPIALSGRDVLGAAKTGSGKTLAFIIPILEL 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  ++S      A+ I+PTRELA Q    L  +  K  +   + IGG S+  E+R +
Sbjct: 69  LWQQ--KWSSMDGIGAIIISPTRELAYQTFEVLRKIGKKHDMSAGLVIGGKSMEEEQRSI 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IV      L         + ++L+ +VLDEAD +LD+GF D +  IL++ P +R+
Sbjct: 127 IATNIIVSTPGRLLQHMDETPNFDCNNLQLLVLDEADRILDMGFADTMNAILENIPDERQ 186

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++         +   V V+  S +   S +    ++  L D+ N + + +
Sbjct: 187 TLLFSATQTKSVKDLARLSLNEPAYVSVHENSTSSTPSRLKQSYMVCELQDKMNLLFSFI 246

Query: 240 RYHGAKNAIVFCSTRASVSRFT--KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           R H     ++F S+   V               ++AL G+  Q +R             V
Sbjct: 247 RNHIKSKILIFMSSCKQVKFVYEAFRRLRPGIPLLALYGKQKQLKRMAIYNEFCRRSEAV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRRA 356
             ATD+AARG+D P ++ V+  +   +    +HR+GRT R  + G ++  ++P   +   
Sbjct: 307 LFATDIAARGLDFPAVDWVVQLDCPEDANTYIHRAGRTARYQKDGQALLVLLPSEEEGML 366

Query: 357 ERLFREA 363
           E L ++ 
Sbjct: 367 EELKKKK 373


>gi|166710445|ref|ZP_02241652.1| ATP-dependent RNA helicase RhlB [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 574

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 209/472 (44%), Gaps = 10/472 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V R  ++L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKVFVERVARILERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD------EKKMVDVLLAKHDPEK 415
                +  EP  S        A R+  +    D   GD       +        +     
Sbjct: 375 YIEQKIPVEPVTSELLTPLPRAARVPVEGEEADDEAGDSVGTIFREAREQRAAEEQRRGG 434

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
             +G     R G          +   G+ R R   R       +    +   
Sbjct: 435 GRSGPGGGSRNGSGGGRRAGASAGADGKPRPRRKPRVEGEAPAAAAQTENPV 486


>gi|121707307|ref|XP_001271794.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|143359800|sp|A1CHL3|PRP28_ASPCL RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|119399942|gb|EAW10368.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 798

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 190/412 (46%), Gaps = 31/412 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + E +   GY   T +Q A +   L+ +D++  A TGSGKT +F L L
Sbjct: 365 MRSWEESGLPKRLLELVDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL 424

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+
Sbjct: 425 LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSL 484

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    +++DEAD M+DLGF + +  ILD
Sbjct: 485 EEQAYSLRNGAEIIIATPGRLVDCIERRILVLSQCCYIIMDEADRMIDLGFEEPVNKILD 544

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------- 220
           + P            + A     +  Q       + S   + +                 
Sbjct: 545 ALPVTNEKPDSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGE 604

Query: 221 ------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
                  R  L+A  D+    +  +          IVF + + +     + +    F  V
Sbjct: 605 AVDTVEQRVELIAGEDKRKKRLADILSSGEFRPPIIVFVNIKRNCDAIAREIKHMGFSSV 664

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G  +Q +R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  HR 
Sbjct: 665 TLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRI 724

Query: 333 GRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 725 GRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSK 776


>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660268|sp|Q6CJV1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
          Length = 748

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 123/448 (27%), Positives = 214/448 (47%), Gaps = 15/448 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + + + L   GY + + +Q A +   L  KD++  A TGSGKT AF + + 
Sbjct: 233 KTFNSLSLSRPVLKGLGSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAAFMIPII 292

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL +    +   +   + + PTRELA+QV    + +     G+   + +GG+++ ++ 
Sbjct: 293 ERLLYKPAHIA---STRVVVLTPTRELAIQVADVGKNIGKFVNGLTFGLAVGGLNLRQQE 349

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L+    IV+ TPGR  DH       ++  ++ +V+DEAD ML+ GF+++++ I+   P
Sbjct: 350 QALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEEGFQEELQEIMSLIP 409

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR+ L+FSAT++  I  L     K  VR+ I    +    +    + +   D     + 
Sbjct: 410 SKRQTLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRIRKRDHLKPALL 469

Query: 238 IL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                       K  +VF + + +  +   VL     QV  L G L+Q++R  ++   + 
Sbjct: 470 YQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLLGMQVGELHGSLTQEQRLQSVNNFKS 529

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  V I TD+A+RG+D+P +E+VI+ ++    E  LHR GRT RAGR+G SV  + ++ 
Sbjct: 530 LQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIYLHRVGRTARAGREGRSVTFVGESS 589

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           Q R   + R A +  V E A S +A+        ++    L   +GD  + +     +  
Sbjct: 590 QDR--SIVRSA-IRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVEEIIEEEKQEK 646

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLV 440
               A   LR     L   EEI+     
Sbjct: 647 EILRAEMELRKGENMLKHKEEISARPRR 674


>gi|251795451|ref|YP_003010182.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
 gi|247543077|gb|ACT00096.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
          Length = 472

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 227/463 (49%), Gaps = 10/463 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K + ++   + +G+ L        +++Q   +   L  +DV   +QTGSGKT+A+ L + 
Sbjct: 4   KTWNDLGINKALGDKLEANNIKVPSAIQAEAIPTLLEGRDVSARSQTGSGKTLAYLLPML 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   +       A  A+ +APT+ELA+Q+ R  E      G+ V   IGG ++ R+  
Sbjct: 64  QQLKPSSG------AIQAIILAPTQELAMQIVRVAEGYAEPLGLRVQQLIGGAAMKRQIE 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    IV+GTPGR+ + ++ + L +S ++ +V+DEAD++ +LG   ++E IL +  ++
Sbjct: 118 KLKLRPQIVIGTPGRIHELLKLRKLKLSDVRHIVIDEADQVFELGSTREVETILFAMSQE 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++  FSAT    +      + KD VR+ IA E R    I+   V+    D+ +A   I+
Sbjct: 178 RQLAFFSATYPDVMARFEGRWMKDTVRIQIAPEQRVSETINNFYVVCDKRDKPDAARRIV 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    ++A++F +   +++ +   L+   F V  L G+  +Q R+  L   R+G+ ++ +
Sbjct: 238 RMLKPESALLFLNVTENIANWEAKLSYEGFSVETLYGDSDKQRRAATLARFREGKTQLLL 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+  L+LVI+ +   + ++ +HR+GRTGR GRKG  + +I    +   ++ 
Sbjct: 298 ATDVAARGLDIEGLQLVINLDPPIDADHYVHRAGRTGRMGRKGTVISLITPQERFIMDKF 357

Query: 360 FREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE-KIA 417
            +   + +  +     E +   D   ++   P    +    E      +  K+  E +  
Sbjct: 358 RKSLRIELPEKAMYKGEFVDPSDLPNKVSARPSPRRTAVEQEVSTRSFVAPKNSKEWESL 417

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSR 460
               R  + G   PE   P          ++  R  K  G  +
Sbjct: 418 LKEERKPKKGAAKPESAAPAPRPKPAATKQERLRDKKDKGAPK 460


>gi|158293341|ref|XP_314700.4| AGAP008601-PA [Anopheles gambiae str. PEST]
 gi|157016658|gb|EAA10183.4| AGAP008601-PA [Anopheles gambiae str. PEST]
          Length = 611

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 213/466 (45%), Gaps = 13/466 (2%)

Query: 1   MKIFEN-IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            K  E  +     +A+ E G+  +T +Q   + P L  +D++ SA+TGSGKT+AF +   
Sbjct: 118 FKSLEGKVSDHTMKAIGEMGFTKMTEIQAKSIPPLLEGRDLIGSAKTGSGKTLAFLIPAV 177

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     RF P +    + I+PTRELA+Q+   L+ L         + +GG S H E  
Sbjct: 178 ELI--HKLRFKPRNGAGVIVISPTRELAMQIFGVLKELMTYHCQTYGLLMGGASRHTENE 235

Query: 120 DLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+ G +I+V TPGRL DH          +L+ +++DE D +L++GF +D++ I+   PK
Sbjct: 236 KLEKGINIIVATPGRLLDHLKSTPNFLFKNLQCLIIDECDRILEIGFEEDLKQIISILPK 295

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
           KR+ ++FSAT S  +  L K   K         +N++ + +       ++     R   +
Sbjct: 296 KRQTMLFSATQSSRLEELGKLALKSEPIYVGVDDNKKEATVTGLEQGYIVCPSERRLLVL 355

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV    ++       V+++ G+  Q +R++      +   
Sbjct: 356 FTFLKKNRKKKVMVFFSSCLSVKFHHELFNYIDLPVMSIHGKQKQSKRTSVFFQFCNAET 415

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK--GMSVFVIPQNMQ 353
            + + TDVAARG+D+P ++ ++  +  ++ +  +HR GRT R G    G ++ ++     
Sbjct: 416 GILLCTDVAARGLDIPAVDWIVQYDPPNDTKEYIHRVGRTAR-GEDLCGHALLMLRPEEV 474

Query: 354 RRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKH 411
              + L ++A V +  +E + S  A  +   + ++    FL+ S +   K  V      H
Sbjct: 475 GFLKYL-KQAKVPLNEFEFSWSKIADIQLQLENLMAKNYFLNQSGKLAFKTYVRAYEGHH 533

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
             +      L + +          P        +  +  R     G
Sbjct: 534 MKDVFNIANLDLVQVAKNFGFTQPPYVDFGKSFKLHNSERRPGNRG 579


>gi|73952797|ref|XP_860793.1| PREDICTED: similar to nucleolar protein GU2 isoform 3 [Canis
           familiaris]
 gi|73952799|ref|XP_860823.1| PREDICTED: similar to nucleolar protein GU2 isoform 4 [Canis
           familiaris]
 gi|73952805|ref|XP_860916.1| PREDICTED: similar to nucleolar protein GU2 isoform 6 [Canis
           familiaris]
          Length = 673

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 75  FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 134

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 135 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 192

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 193 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 252

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 253 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 312

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 313 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 371

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 372 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 431

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 432 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 462


>gi|148549632|ref|YP_001269734.1| ATP-dependent RNA helicase RhlB [Pseudomonas putida F1]
 gi|161378136|ref|NP_743455.2| ATP-dependent RNA helicase RhlB [Pseudomonas putida KT2440]
 gi|148513690|gb|ABQ80550.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 480

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 182/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 98  LSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTP 157

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V++   G     + +      
Sbjct: 158 PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARH 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 218 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 277

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 278 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 337

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 338 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATD 397

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 398 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEAL 457

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 458 LGRKIKCEMPP 468


>gi|322503130|emb|CBZ38214.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 917

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 178/403 (44%), Gaps = 25/403 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +   +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 464 VEDFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPV 523

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+AL +APTRELAVQ+  E+  L   T +   V  GG    +
Sbjct: 524 VQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQ 583

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE------ 170
                     I+V  PGRL D    + L+ S +K ++LDEAD ML++GF + IE      
Sbjct: 584 RFEQ-----DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASR 638

Query: 171 -FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              + +  +++  +  +      +    +  ++    + +        +I      V  +
Sbjct: 639 YTDMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDN 698

Query: 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ + ++ I+  +  +   ++F  T+       + L         + G+  QQ+R  AL+
Sbjct: 699 EKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALE 758

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +ATDVA+RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++    
Sbjct: 759 DFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFY 818

Query: 349 PQNMQR---RAERLFREANVSVV-----WEPAPSVEAIRERDA 383
            +N +R      + F E    +             EA+  RD 
Sbjct: 819 NRNNRRLALDLHKYFSEHGQEIPKWFQQEAELVEGEALLSRDM 861


>gi|195581763|ref|XP_002080703.1| GD10627 [Drosophila simulans]
 gi|194192712|gb|EDX06288.1| GD10627 [Drosophila simulans]
          Length = 527

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 219/490 (44%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML   F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLSGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   +   +      +    +  S+      +D R +L A  DRD  ++        
Sbjct: 188 SATMRDFMKESSIFPIASNCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++  A  
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA-A 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMQG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L   R +  D +R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLKEIRRKRKLQQAESAASEEGKALLQDERFKSVDSARFEKKGK 484

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 485 GRSRVTQEDT 494


>gi|257082654|ref|ZP_05577015.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
 gi|256990684|gb|EEU77986.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
          Length = 449

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 203/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 4   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 63  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 117 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 177 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+ +V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 237 LLTIGHPYLAIVFANTKQTVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 357 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 401 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 446


>gi|194205945|ref|XP_001503679.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Equus
           caballus]
          Length = 738

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|325191253|emb|CCA26039.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 563

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 120/501 (23%), Positives = 227/501 (45%), Gaps = 26/501 (5%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++P  +    ALSE G+  +T +Q   + P L   D++ +A+TGSGKT++F +   
Sbjct: 71  ESFHSLPLSEPTQRALSEMGFEKMTKIQAKSIAPLLSGHDLIAAAKTGSGKTLSFLIPTI 130

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N  F+P      + I+PTRELA+Q+   +  L         + +GG +   E  
Sbjct: 131 ELLHKVN--FNPRRGAGCIIISPTRELALQIYGVVRDLCRYHSQTHGIIMGGANRGAEAE 188

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +I+V TPGRL DH++      + +L+ +V+DEAD +L +GF +++  I+   PK
Sbjct: 189 RLSKGVNILVSTPGRLLDHLQNTKGFLVHNLQILVIDEADRILSIGFEEEMRQIIKCIPK 248

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  +         +K          N   S ++   V+     R   + 
Sbjct: 249 ERQTMLFSATQTKKVQDLARLSIREKPIYVGIEDEVNATVSSLEQGYVVTPSDKRFLLLF 308

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ + +K  +VF S  A+V  + ++L      V+ + G+  Q +R+       + +  
Sbjct: 309 TFLKKNLSKKVMVFFSACATVKFYGELLNYIDIPVMDIHGKQKQTKRTTTFFQFCNAKTG 368

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRR 355
           + + TDVAARG+D+P ++ +I  +   +P+  +HR GRT R A   G ++ ++  +    
Sbjct: 369 ILLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGAHGSGKALLLLLPDELGF 428

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            + L R + V++     P  + A  +    ++++   +L     D  +   +  A H  +
Sbjct: 429 LKYL-RASKVTLNEYEFPVKKLANVQSQLMKLIEKTYYLHKSAKDAYRGYLLAYASHSLK 487

Query: 415 KI-------AAGFLRIHRAGLCAPEEITPVSLVSG---RDRFRDDSRAFKVGGGSRDNFK 464
            I            +    GL  P ++T     SG   + +     +  +    S   F 
Sbjct: 488 NIFDVSQLDLQALAKSF--GLEIPPKVTLPVKTSGNLAKRKAPFYEKGSRKNQRSGHTFS 545

Query: 465 GSSWFSLSVGSKQKAEARWLM 485
             + +    G +   + R  +
Sbjct: 546 ADNPY----GKRAPDDKRQFV 562


>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
 gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
          Length = 431

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/410 (27%), Positives = 190/410 (46%), Gaps = 12/410 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND- 67
           Q +   L+E  Y   T +Q   +   LR  D++  A TGSGKT  F L L   +  +   
Sbjct: 17  QPLLARLTELEYQQPTPIQAQAIPSILRGHDLIAGANTGSGKTATFALPLLQHIFEQQQA 76

Query: 68  ------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERR 119
                      +   +L + PTRELA QV   ++         +      GGVS + +  
Sbjct: 77  QKNVSNSREKGNYVTSLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQML 136

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D I    + +  ++ +VLDEAD ML LGF D++  +L   PKK
Sbjct: 137 ALRGGTDILVATPGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSALLALLPKK 196

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT    +  L +    + V + + S +        R   V    +   + +++
Sbjct: 197 KQTLLFSATFPEQVQALTQELLNEPVEIQLQSADASTL--VQRVFTVNKGQKTALLAHLI 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           ++H  + A++F + + +     + L++         G   Q  R   L+  + G   V I
Sbjct: 255 KHHQWRQALIFVNAKRNCDHLAEKLSKRGITAEVFHGAKGQGARDRVLESFKAGEINVLI 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I        + +
Sbjct: 315 ATDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKII 374

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            ++  + +  E     E + E DA    + P+      G +K+     + 
Sbjct: 375 EKKNKIRLEREQVAGFE-LTENDALITTEKPMAKPEGSGKKKRKNKPTIN 423


>gi|160900768|ref|YP_001566350.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160366352|gb|ABX37965.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 707

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 125/416 (30%), Positives = 188/416 (45%), Gaps = 46/416 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKD-----VLVSAQTGSGKTVAFGLALAST 61
           + + +  A+++ GY   T+VQ   +   +   D     ++VS+QTGSGKT AF L +  T
Sbjct: 95  LAEELVRAVADLGYTQPTAVQAQAIPLAMGSDDQAFIDLMVSSQTGSGKTAAFLLPVLHT 154

Query: 62  LLAE------------------------------------NDRFSPASAPLALAIAPTRE 85
           L+ +                                    N R   A+ P AL + PTRE
Sbjct: 155 LIQQKADEEAAIRAEYDRQCAEATASGQPTPKRNKRKDPTNPRNFKAAVPGALILCPTRE 214

Query: 86  LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN 145
           LA QV  +   L      +    + G   ++ +      A++VV TPGRL D  R   + 
Sbjct: 215 LAQQVAHDAIELVKHCRGIRIANVVGGMPYQLQIAKLQNANLVVATPGRLLDLQRSMQIK 274

Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD-- 203
           +  ++ +V+DEAD MLDLGF DD+  + D + ++++ +MFSAT +P I  LA     D  
Sbjct: 275 LDQVQFLVVDEADRMLDLGFSDDLAEVNDLTAQRKQTMMFSATFAPRIQQLAMRVMHDGG 334

Query: 204 ---AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
                      + +  S             +   + + LR      AIVF ST+      
Sbjct: 335 SGVKKVTIDTPQEKHASIKQVLFWADNSQHKRKLLDHWLRDTTINQAIVFASTQVECDGL 394

Query: 261 TKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320
              L +  F  VAL G LSQ  R+  L  +R G+ +V +ATDVAARGID+P +  V +  
Sbjct: 395 ANDLQQDGFSAVALHGALSQGLRNRRLMALRSGQVQVLVATDVAARGIDVPTITHVFNYG 454

Query: 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           L    E+  HR GRTGRAGR+G++V       +RR   +   +      E  P +E
Sbjct: 455 LPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRIFDIEAYSRQQFKAEVIPGLE 510


>gi|145592945|ref|YP_001157242.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           tropica CNB-440]
 gi|145302282|gb|ABP52864.1| DEAD/DEAH box helicase domain protein [Salinispora tropica CNB-440]
          Length = 621

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 190/373 (50%), Gaps = 6/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   +   +AL+  G     ++QE  L   LR  D++  A TG+GKT+ FG+ L  
Sbjct: 98  TFAELGARKETVDALNAAGITRAFAIQEYALPIALRGVDLIGQAPTGTGKTLGFGVPLLE 157

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A  +       P AL + PTREL +QV ++L    +  GV V    GGV+   +   
Sbjct: 158 RVFAPAEGGD--GTPQALVVVPTRELGIQVAKDLHAAGSTRGVRVLPIYGGVAYEPQIEA 215

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+VGTPGRL D  + K L +  ++A+VLDEAD MLDLGF DD+E IL   P++R
Sbjct: 216 LRTGVEILVGTPGRLLDLAKQKQLKLDRVRALVLDEADRMLDLGFLDDVEKILAMLPEER 275

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN--IASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+   I  L++ + +  V ++    +E          A      ++   +  I
Sbjct: 276 QTMLFSATMPDPIVALSRRFLRRPVTIHAGHTAETGPSPQTQQLAYRTHSLNKIEIVARI 335

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ +  R    L    F V A+ G+L Q  R  AL+  R G+    
Sbjct: 336 LQAKGRGLTMIFTRTKRAADRVAADLDFRGFAVAAVHGDLGQGARERALRAFRTGKIDTL 395

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+  +  V++ +   + +   HR GRTGRAG  G++V  +  +   R   
Sbjct: 396 VATDVAARGIDVSGVTHVLNYDCPEDQDTYTHRIGRTGRAGASGVAVTFVDWDDMPRWRI 455

Query: 359 LFREANVSVVWEP 371
           + +   + +   P
Sbjct: 456 IDKTLGLEMPEPP 468


>gi|270003649|gb|EFA00097.1| hypothetical protein TcasGA2_TC002912 [Tribolium castaneum]
          Length = 557

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 145/376 (38%), Gaps = 33/376 (8%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+  N+  +I   + + GY+  T VQ+  +   L  +++L  A TGSGKT AF + +
Sbjct: 114 VKTFDDLNVDPIIINNVKKCGYIEPTPVQKQAVPIMLEGRNLLACAPTGSGKTAAFLIPI 173

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVH 115
              L     +        AL + PTRELA Q  RE   L    G  V V          +
Sbjct: 174 LHDL-----KGPRKEGFRALVLCPTRELAKQTQRECIRLSEGKGFHVHVISKINKALIQY 228

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
                 +    I                L+++++K +V+DEAD++ + G R   E +   
Sbjct: 229 GPNSSQKFDILITTPNRVCFLLKQDQAALSLANIKWLVIDEADKLFETGNRGFREQLDQI 288

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                      A  S   T +   +    ++  +     Q   +                
Sbjct: 289 LNACTNKEKKVAMFSATYTPMVAKWCVHNMKGLVRITVGQRDLVK--------------- 333

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
                       +VF  ++    +    L      V A+  + +Q +R N ++  R+GR 
Sbjct: 334 -----KGLTPPVLVFVQSKDRAQQLFNELIYDGINVDAIHADRTQLQRDNTVRSFREGRI 388

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN---M 352
            V I T++ ARGID   + LVI+ +   +  + +HR GR GRAGR G ++          
Sbjct: 389 WVLICTELMARGIDFKGVNLVINYDFPPSAISYVHRVGRAGRAGRTGKAITFFTVENTVN 448

Query: 353 QRRAERLFREANVSVV 368
            R    + +E+   V 
Sbjct: 449 LRSIAYVLKESGCEVP 464


>gi|73996628|ref|XP_863206.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 11 [Canis familiaris]
          Length = 811

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 119/396 (30%), Positives = 198/396 (50%), Gaps = 36/396 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L S +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLSGIEE 455

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
            +        P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ G
Sbjct: 456 SDQ------GPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMG 509

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-------- 176
             IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+          
Sbjct: 510 CEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPD 569

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  
Sbjct: 570 TDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHER 629

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 630 VEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGK 689

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRA
Sbjct: 690 GQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRA 749

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           G+ G+++  + +        +F E   +++  P  S
Sbjct: 750 GKSGVAITFLTKEDS----AVFYELKQAILESPVSS 781


>gi|324507937|gb|ADY43357.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 625

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 172/379 (45%), Gaps = 13/379 (3%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE      P+V+   L    +   T +Q          +D++  A+TGSGKT+AF L  
Sbjct: 191 VFEFNESGFPEVLVNMLYSS-FERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPG 249

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +  R      P  L + PTRELA QV           G+ V    GG +   + 
Sbjct: 250 IIHTTKQPPR-GRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQA 308

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  + + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+     
Sbjct: 309 RDLERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRP 368

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LMFSAT    +  LA ++Q D   +N+ S     N   + +           R   
Sbjct: 369 DRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQGRMMT 428

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        +VF  T+      T+ +    +  + + G+ +Q ER   L   + G+
Sbjct: 429 LLTDIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGK 488

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  +N E+ +HR GRT R  +KG +      +   
Sbjct: 489 TPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNAP 548

Query: 355 RAERLFR---EANVSVVWE 370
           +A  L +   EAN  V  E
Sbjct: 549 KARDLIKVMEEANQVVPPE 567


>gi|195032613|ref|XP_001988529.1| GH11216 [Drosophila grimshawi]
 gi|193904529|gb|EDW03396.1| GH11216 [Drosophila grimshawi]
          Length = 864

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 441 SGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 500

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 501 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRL 560

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 561 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 620

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 621 KPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 680

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 681 ERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 740

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 741 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 800

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G+++  + ++       L
Sbjct: 801 RAGKTGVAISFVTKDDSGLFYDL 823


>gi|114630813|ref|XP_507824.2| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Pan
           troglodytes]
          Length = 737

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|254388923|ref|ZP_05004154.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
 gi|197702641|gb|EDY48453.1| hypothetical protein SSCG_01341 [Streptomyces clavuligerus ATCC
           27064]
          Length = 891

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 184/366 (50%), Gaps = 10/366 (2%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDR 68
           EAL   G +N   +QE  L   L   DV+  A+TG+GKT+ FGL L   +      E  R
Sbjct: 57  EALEAVGILNPFPIQEMTLPVALSGTDVIGQAKTGTGKTLGFGLPLLERVTVPADVEAGR 116

Query: 69  FSP---ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             P   + AP AL + PTREL  QV  +L        V V    GG +   +   L+ G 
Sbjct: 117 ARPDQLSEAPQALVVVPTRELCTQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALRKGV 176

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D    K L++S ++A+VLDEADEMLDLGF  D+E I+   P KR+ ++F
Sbjct: 177 DVIVGTPGRLLDLAGQKKLDLSQVRALVLDEADEMLDLGFLPDVEKIIQLLPAKRQTMLF 236

Query: 186 SATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT+      +     +            E    ++I  R       D+   +  IL+  
Sbjct: 237 SATMPGAVIGLARRYMSQPTHIRATAPDDEGATVANITQRVYRAHSMDKPEMVSRILQAE 296

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G   A++FC T+ + +     LA   F   A+ G+L Q  R  AL+  R+G+  V + TD
Sbjct: 297 GRGLAMIFCRTKRTAADIADQLARRGFASGAVHGDLGQGAREQALRAFRNGKVDVLVCTD 356

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+  +  VI+ +   + +  LHR GRTGRAG  G +V ++  +   R + + + 
Sbjct: 357 VAARGIDVEGVTHVINYQSPEDEKTYLHRVGRTGRAGASGTAVTLVDWDDIPRWQLINKA 416

Query: 363 ANVSVV 368
            ++   
Sbjct: 417 LDLKFP 422


>gi|291242221|ref|XP_002741008.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Saccoglossus kowalevskii]
          Length = 681

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 160/440 (36%), Gaps = 31/440 (7%)

Query: 1   MKIFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  F+ + Q       I + + + GY + T +Q   L   L  ++VL  A TGSGKT AF
Sbjct: 164 IDSFQQLKQEYKINSTILKNVEDVGYQSPTPIQMQTLPLMLHRREVLACAPTGSGKTAAF 223

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L     +        A+ ++PTRELA Q  RE   L       + +       
Sbjct: 224 IIPVLHHL-----KEPRKQGFRAVVVSPTRELAQQTYREFCRLAEGRSFRIHIIDKTSQA 278

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
            ++     +    ++ T      ++  +     +L  V     DE              +
Sbjct: 279 AKKFGPQSSQKFDILVTTPNRLVYMLNQHPPALNLTNVEWLIVDESDKLFEEGKQGFREQ 338

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
             + +    S + RR +  +            N    A            +       + 
Sbjct: 339 LALIYKACDSMQVRRAMFSATFAYDVEQWCKLNLDNVASVTIGQRNAAVDTIEQELLFVG 398

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
               +  AI +I+R       +VF  ++         L      V  +  + +Q +R N 
Sbjct: 399 QEYGKLLAIRDIIRKGVQPPMLVFVQSKERAKELFLELIYDGINVDVIHADRTQTQRDNV 458

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++  R G+  + I T++  RGID   + LV++ +  S+  + +HR GRTGRAGR G +V 
Sbjct: 459 VRSFRAGKIWILICTELMGRGIDFKGVNLVVNYDFPSSAVSYIHRIGRTGRAGRAGRAVT 518

Query: 347 VIPQNMQRRAERL---FREANVSVV----WEPAPSVE-----AIRERDAQRILQDPLFLD 394
               +       +    REA   V       P PS +     A  E   + I   P  + 
Sbjct: 519 FFTHDDVTNLRSIANVMREAGCPVPDYMLELPKPSKKTRKQLAKHEVKRETIRTLPTDIL 578

Query: 395 SIQGDEKKMVDVLLAKHDPE 414
                +KK + ++  + D +
Sbjct: 579 QRTKRKKKFIKMIKQRRDED 598


>gi|66807079|ref|XP_637262.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
 gi|74996736|sp|Q54KG1|DDX41_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx41; AltName:
           Full=DEAD box protein 41
 gi|60465669|gb|EAL63748.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
          Length = 671

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 189/389 (48%), Gaps = 12/389 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   IP+ + + L E+G    + +Q   L   L  +D++  A TGSGKT+ F L +
Sbjct: 221 ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM 280

Query: 59  ASTLLAENDRFS--PASAPLALAIAPTRELAVQVG-------RELEWLYAKTGVVVAVCI 109
               L E  +        P  L + P+RELA Q           L        +   + I
Sbjct: 281 VLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAI 340

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG+ +  +    + G H+++ TPGRL D +  K +N    K + LDEAD ++DLGF DDI
Sbjct: 341 GGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFEDDI 400

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
             +LD+   +R+ L+FSAT+   I   A++     V VN+      + ++      V   
Sbjct: 401 RSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPE 460

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   ++  L+       ++FC  +  V    + L     + V++ G+ SQ ER +A++ 
Sbjct: 461 AKIVYLLECLQKTPPP-VLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKA 519

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R+G+  V +ATDVA++G+D P+++ VI+ ++    EN +HR GRTGR G KG++   I 
Sbjct: 520 FREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFIN 579

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI 378
           +N         +   +    +  P++  I
Sbjct: 580 KNNTESLLLDLKYLLIEAKQKVPPALLEI 608


>gi|296220523|ref|XP_002756345.1| PREDICTED: ATP-dependent RNA helicase DDX50 isoform 2 [Callithrix
           jacchus]
          Length = 711

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|311739803|ref|ZP_07713637.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304876|gb|EFQ80945.1| ATP-dependent RNA helicase DeaD [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 441

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 116/398 (29%), Positives = 186/398 (46%), Gaps = 6/398 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I + L+ RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D  
Sbjct: 19  EICDGLASRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDRVFDDADID 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA QV  +L+       V +A   GG     + + L  G  +++
Sbjct: 79  ELDGTPRALVVVPTRELAQQVTEDLQVAATHLPVRLASIYGGRPYEEQIKQLNKGVDVII 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM---FS 186
           GTPGRL D      L +  +  +VLDEADEMLDLGF   +E IL +        M    +
Sbjct: 139 GTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAHQTMLFSAT 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +          +   +R     ++  HS            D+   + + L+  G   
Sbjct: 199 MPGAILTLARRFMDKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAHALQAAGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ + ++    LA   F V A+ G+L Q+ R  +L   R G+  + +ATD+AAR
Sbjct: 259 TIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G ++ ++  +   + + +  E ++ 
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQVINDELDLG 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              EP P        +  + L  P  ++   G E K+V
Sbjct: 379 ---EPNPPQWFSTSPELAQALDIPAEVEETVGPETKVV 413


>gi|156057349|ref|XP_001594598.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980]
 gi|160419160|sp|A7EGG4|PRP28_SCLS1 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|154702191|gb|EDO01930.1| hypothetical protein SS1G_04405 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 816

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 110/407 (27%), Positives = 191/407 (46%), Gaps = 32/407 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + +++ GY   ++VQ A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 386 LPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 445

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + F+    P A+ +APTRELA Q+  E +      G      +GG S+  +  +L+NG
Sbjct: 446 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 505

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D I  + L +     +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 506 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 565

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------SDI 219
                     +     +    +  + +                                +
Sbjct: 566 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 625

Query: 220 DYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   VA  D+    +N +          IVF + + +     + +    F  V L G 
Sbjct: 626 EQRVEFVAGEDKRKKRLNEILASGEFQPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 685

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 686 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 745

Query: 338 AGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           AG+ G+++  +           +++  ++++S V E     EA +++
Sbjct: 746 AGKSGVAITFLGNEDADTMYDLKQMLMKSSISRVPEELRKHEAAQQK 792


>gi|125526999|gb|EAY75113.1| hypothetical protein OsI_03008 [Oryza sativa Indica Group]
          Length = 359

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 184/373 (49%), Gaps = 17/373 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   +   +   G+   +++Q+  + P +  +DV+  AQ+G+GKT    L++   +    
Sbjct: 3   IRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVD--- 59

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL ++PTRELA Q  R +  +     + V  CIGG S+  + R L++G H
Sbjct: 60  ---TAVREVQALILSPTRELAAQTERVMLAIGDFINIQVHACIGGKSIGEDIRKLEHGVH 116

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+CD I+ + L    +K ++LDEADEML  GF+D I  +    P + ++ + S
Sbjct: 117 VVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFKDQIYDVYRYLPPELQVCLIS 176

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D VR+ +  +      I    V +     + + + ++       
Sbjct: 177 ATLPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTIT 236

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T+ +  + F V A+ G++ Q+ER   +   R G  RV I TD   
Sbjct: 237 QAVIFCNTKRKVDWLTERMRSNNFTVSAMHGDMPQKERDAIMGEFRSGATRVLITTD--- 293

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
                  + LVI+ +L +N E  +HR GR+GR GRKG+++  + +   R    + +  + 
Sbjct: 294 -------VSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKKEDIRILRDIEQYYST 346

Query: 366 SVVWEPAPSVEAI 378
            +   P    + I
Sbjct: 347 QIDEMPMNVADLI 359


>gi|118094019|ref|XP_422189.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 625

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 104/396 (26%), Positives = 186/396 (46%), Gaps = 17/396 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T +Q  ++   L  +D++ SA TGSGKT AF L +   
Sbjct: 211 FEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMK 270

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
           +L E +       P AL +APTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 271 VLNETE------TPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHR 324

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL + +R   + +  +K VV+DE D ML +GF+  +  IL+      
Sbjct: 325 LKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDH 384

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI   I  LA     + VR+ I  +N   S++          +   +   I+N
Sbjct: 385 QTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 444

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      Q  ++  E SQ ER+  LQ +   +  V
Sbjct: 445 DKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEV 504

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G  G ++  I  N ++   
Sbjct: 505 IVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 564

Query: 358 RLFREANVSVVWEPA-----PSVEAIRERDAQRILQ 388
            + +    +    P      P +   + R+ QR+ Q
Sbjct: 565 DVVKRVKPTGTILPPQLLNSPYLHDQKRREQQRLKQ 600


>gi|196004420|ref|XP_002112077.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
 gi|190585976|gb|EDV26044.1| hypothetical protein TRIADDRAFT_55752 [Trichoplax adhaerens]
          Length = 633

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 133/457 (29%), Positives = 198/457 (43%), Gaps = 21/457 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  I   I ++L ERG   L  +Q    +     +DV+  A+TG+GKT++F L +  
Sbjct: 54  FKKF-RISSAIADSLKERGITYLFPIQAQTFDYVYDGQDVIGQARTGTGKTLSFALPITE 112

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+ +         P  L +APTRELA+Q+  E + L       V    GGV    +   
Sbjct: 113 KLIKKKRSDDKIRPPKVLVLAPTRELAIQITSEFKALSGSL--KVVCIYGGVPYAEQENH 170

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NG  IV+GTPGR+ DHI  K L +S LK VVLDE D MLD+GF D +E IL  +  K 
Sbjct: 171 LRNGIDIVIGTPGRIKDHIDRKNLVLSKLKHVVLDEVDRMLDMGFCDIVEEILSHAYVKD 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS--------ENRQHSDIDYRAVLVALSDRD 232
           R        +       K   K                       +    +         
Sbjct: 231 RHPQTLLFSATMPKWALKTIDKYMKSDKKIVDLIGKDALRTSTTVEHKVISCPYHERAAT 290

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +  +        I+F  T+   +             V   G++ Q +R   L+  R+
Sbjct: 291 IGDLVKVYGGDHARTIIFSPTKKEANELALSSVLKQEVQVLH-GDIQQAQREVTLKGFRE 349

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G     +ATDVAARG+D+P+++LVI  E   + +  +HRSGRTGRA R G+ +       
Sbjct: 350 GNFPCLVATDVAARGLDIPEVDLVIQCEPPKDADTYIHRSGRTGRANRTGICITFYKPTH 409

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           Q R + +  EA ++     AP +  I +   RDA + L      DS+  +     + + +
Sbjct: 410 QDRIKSIESEAGINFCRIGAPQLGDIIQATSRDAAKSL------DSVPAEVLVHFESIAS 463

Query: 410 KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
           +    K A   L    A +     IT  SL+S R+ F
Sbjct: 464 EIIETKGAVKALSAALAHISGYTSITNRSLLSSREGF 500


>gi|307331142|ref|ZP_07610269.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306883222|gb|EFN14281.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 507

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 126/382 (32%), Positives = 191/382 (50%), Gaps = 7/382 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  +  P  +  ALS  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL 
Sbjct: 69  ETFAELAMPSALLAALSAEGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALL 128

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +       R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+  
Sbjct: 129 AR--TAGQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARPLKLRLATVVGGMSIGRQSS 185

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    +
Sbjct: 186 ALRGGVEVVVATPGRLKDLIGRGDCRLNRVDITVLDEADQMADMGFMPQVTALLDQVRPE 245

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+        
Sbjct: 246 GQRMLFSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHATTTE-- 303

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+F  T+ +V   TK L     +  AL G  SQ +R+  L   + G   V +
Sbjct: 304 IAAREGRSIMFLDTKHAVDNLTKHLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLV 363

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           AT+VAARGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL
Sbjct: 364 ATNVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVLPNQRRTMNRL 423

Query: 360 FREANVSVVWEPAPSVEAIRER 381
             +A ++       S EA   R
Sbjct: 424 MADAGITPQSTQVRSGEAELSR 445


>gi|82523756|emb|CAI78756.1| probable ATP-dependent RNA helicase [uncultured gamma
           proteobacterium]
          Length = 505

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 193/379 (50%), Gaps = 6/379 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE  ++ + +   L      + T VQ+  +   L  +D+LVSA+TGSGKT+A+ + LA 
Sbjct: 59  VFEELDLDRQLRLGLDALELGDATEVQKLAVPAALAGRDLLVSAETGSGKTLAYLIPLAQ 118

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA     +      AL + PTRELA QV + +  L AK+ +      GG     ++  
Sbjct: 119 KILAAPAGTT--QGTQALILVPTRELARQVLKHIRQLLAKSPLKAQAITGGADFKYQKSQ 176

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+VGTPGRL +H R    ++  L+ +VLDEAD MLD+GFR+D+  I D  P  R
Sbjct: 177 LRQDPEIIVGTPGRLLEHCRKLSTDLGRLQTLVLDEADRMLDMGFREDVLAIADFCPASR 236

Query: 181 RMLMFSAT--ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +ML+ SAT          A                   +      +    + +D  ++ +
Sbjct: 237 QMLLLSATLSHRGVGDIAATLRLNPQSIAVGQVRQPHSNISHQLILADNQTHKDQLLLAL 296

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+    +  +VF + R + +R  ++      +   L GEL+ +ER   +   ++G+  + 
Sbjct: 297 LQQGDYQRVLVFGNKRDTAARLHQLTQGQRLRSACLHGELTTEERKQVMHRFQEGKVNIV 356

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            A+DVAARG+D+  ++LVI+ ++  + +N LHR+GRTGRAG+KG+++ +       R   
Sbjct: 357 CASDVAARGLDIQGIDLVINYDIPYSGDNYLHRTGRTGRAGQKGLAISLAGAAEWNRMVS 416

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R   +    +  P ++A
Sbjct: 417 IERYLAIHFERQTLPGLKA 435


>gi|301605166|ref|XP_002932198.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Xenopus
           (Silurana) tropicalis]
          Length = 785

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 195/415 (46%), Gaps = 23/415 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++   P V+   +   GY   T +Q  ++   L  +D+L SA TGSGKT AF L     
Sbjct: 372 FDHCQFPPVLSSNIKAAGYEVPTPIQMQMIPVGLMGRDILASADTGSGKTAAFLLPAIIR 431

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L + D      +P AL + PTRELAVQ+  + +  +     +  A+ +GG+ +  +   
Sbjct: 432 CLEKKD------SPAALILTPTRELAVQIEGQAKELMRGIPHMRTALLVGGMPLPPQIHR 485

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +++ TPGRL + I+   +N+  LK +++DEAD ML +GF+  +  IL+  P   
Sbjct: 486 LKQGVQVIIATPGRLLEIIKQDSVNLGDLKILIVDEADTMLKMGFQQQVLDILEVVPHDH 545

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI   I    K   +D VR+ +  +N+  +++          +   +   I+N
Sbjct: 546 QTILVSATIPAGIEAFTKQLLQDPVRITVGEKNQPCTNVRQIVLWVEEPSKKKKLFEILN 605

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + VA+  + SQ ER   LQ +  G   V
Sbjct: 606 DSKLFQPPVLVFVDCRLGADLLSDAVSKITGLECVAMHSDKSQVERMKILQGLLQGEYDV 665

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G +G ++  I +N +    
Sbjct: 666 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQIGRAGRLGHRGTAITFINKNNRNLFW 725

Query: 358 RLFREANVSVVWEPA-----------PSVEAIRERDAQRILQDPLFLDSIQGDEK 401
            L +    +    P              V+    RD ++++     LD I+  ++
Sbjct: 726 DLVKRVQPTGSLLPPQLLNSPYVQEQKKVDERLRRDKEKVVTGDQILDLIRKHDR 780


>gi|256853014|ref|ZP_05558384.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
 gi|256711473|gb|EEU26511.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
          Length = 449

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 4   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 63  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 117 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 177 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 357 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 401 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 446


>gi|39945858|ref|XP_362466.1| hypothetical protein MGG_08049 [Magnaporthe oryzae 70-15]
 gi|152013483|sp|A4RGU2|DBP4_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP4
 gi|145019285|gb|EDK03513.1| hypothetical protein MGG_08049 [Magnaporthe oryzae 70-15]
          Length = 798

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 106/449 (23%), Positives = 196/449 (43%), Gaps = 30/449 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P  +   + + +  +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + L 
Sbjct: 49  KAFAELPLSEPTAKGVRDSHFETLTDIQARAIPLALKGRDILGAAKTGSGKTLAFLVPLL 108

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E   ++  +   AL ++PTRELAVQ  + L  +         + IGG SV  E  
Sbjct: 109 EKLYREQ--WTQEAKLGALVLSPTRELAVQTFQVLRKIGRHHLFSAGLVIGGKSVREEAE 166

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     ++      L    +  G ++ +L+ +VLDEAD ++DLGF+ D++ ++   P  
Sbjct: 167 ALSRMNILIGTPGRILQHLDQTHGFDVDNLQLLVLDEADRIMDLGFQRDVDALVQHLPTT 226

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT S  ++          + V V+  +     S +    ++  L ++ + +  
Sbjct: 227 RQTLLFSATQSKKVSDLARLSLKDPEYVSVHAEATTATPSTLQQHYIVTPLPEKLDTLWG 286

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            ++ +     +VF S+   V    +   +    +  L     Q++ +     +     + 
Sbjct: 287 FIKANLKSKMVVFLSSGKQVRFVYESFRQMQPGIPLLHMHGRQKQLARLDVTKRFDSSKH 346

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
               ATDV ARGID   ++ V+  +   + ++ +HR GRT R  R+G + +F+ P     
Sbjct: 347 ACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVGRTARYEREGKAVIFLDPSEEAG 406

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             +RL R+          P  +   +   ++ ++D L              +    HD +
Sbjct: 407 MLKRLERKK--------VPITKVTAKDSKKKSIRDEL------------QSICWKSHDVK 446

Query: 415 KIAA-GFLRIHRAGLCAPEEITPVSLVSG 442
            +A   F+   RA   A E     +  S 
Sbjct: 447 YLAQKAFISYARAVHRATERDEKHNENSD 475


>gi|307279184|ref|ZP_07560242.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
 gi|306504309|gb|EFM73521.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
          Length = 452

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 7   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 66  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIQVSNFVGGTDKQRQL 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 120 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 180 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 360 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 403

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 404 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 449


>gi|303279012|ref|XP_003058799.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459959|gb|EEH57254.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 485

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 122/404 (30%), Positives = 191/404 (47%), Gaps = 28/404 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  + P  +   L   G+   T +Q       L  +DV+  A+TGSGKT++F L  
Sbjct: 59  ITTFEEASFPDYVLSELRAAGFPTPTPIQSQAWPTVLSGRDVVAVAETGSGKTLSFLLPA 118

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+     P   P+AL +APTRELAVQ+  E     A + +  A   GG     + 
Sbjct: 119 VVHVNAQ-PYLEPGDGPIALVLAPTRELAVQIQAEAAIFGASSKIKSACVYGGAPKGPQV 177

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  I   TPGRL D I  + +++  +   VLDEAD MLD+GF   I  I D    
Sbjct: 178 SALRDGVEICAATPGRLIDFIETRAVSLRRVTYFVLDEADRMLDMGFEPQIRKISDRIRP 237

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+F+AT    +  +A ++  D V V +   + + + +I     ++   ++   +V+
Sbjct: 238 DRQTLLFTATWPKEVEGVAADFLHDPVTVRVGDASLKANVNIAQSVDVMDEDEKYGKLVS 297

Query: 238 ----------------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
                                  +  IVF +++A V   T+ L    F  +++ G+ SQ+
Sbjct: 298 LLERQLDGGGKSAEDAEYAAASPRRIIVFLASKAKVDAVTRRLRTDGFPALSIHGDKSQE 357

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE-----NLLHRSGRTG 336
           ER   L   R G + V +ATDVAARG+D+ D+  VI+ +  S+       + +HR GRTG
Sbjct: 358 EREWVLGEFRAGTSPVMLATDVAARGLDVKDVRCVINHDFPSSGASYLTLDYVHRVGRTG 417

Query: 337 RAGRKGMSVFVIPQNMQRRAE---RLFREANVSVVWEPAPSVEA 377
           RAG +G +         R A+    L R+   +V    A  VEA
Sbjct: 418 RAGARGEAHSFFTSADARHAKALCALLRDGGCAVPDALARHVEA 461


>gi|187477179|ref|YP_785203.1| ATP-dependent RNA helicase DbpA [Bordetella avium 197N]
 gi|115421765|emb|CAJ48276.1| ATP-independent RNA helicase [Bordetella avium 197N]
          Length = 462

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 133/391 (34%), Positives = 202/391 (51%), Gaps = 12/391 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
              G+  +T +QE  L   L  +D++  A+TGSGKT AFGL L  +L           AP
Sbjct: 20  QSLGFEQMTPIQEQSLPLILDGRDLIAQAKTGSGKTAAFGLGLLQSLDLTR------LAP 73

Query: 76  LALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            AL + PTRELA QV +EL  L      V V    GG +   +   L  GAH+VVGTPGR
Sbjct: 74  QALVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAGRPQAESLARGAHLVVGTPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L+++ LK +VLDEAD M+D+GF DDI  I    P KR+ L+FSAT    I 
Sbjct: 134 VQDHLARGNLDLAALKTLVLDEADRMVDMGFYDDIVAIASHCPVKRQTLLFSATYPDNIR 193

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L+  + ++   V         S I+     +  +DR +A+  +L ++   + +VFC+T+
Sbjct: 194 KLSARFLRNPAEV-KVQTQHDASRIEQIFYEIDEADRLDAVATLLAHYRPASTLVFCNTK 252

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + L        AL+G+L Q++R   L    +    V +ATDVAARG+D+ +L 
Sbjct: 253 IRSHELIERLRADGISAQALNGDLEQRDRDEILIQFANQSCAVLVATDVAARGLDIQNLS 312

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ ++S + E  +HR GR+GR  +KG+++ +      R A  + +     + W    S
Sbjct: 313 AVINVDVSKDTEVHVHRIGRSGRGEQKGLALSLCSPEEMRWANLIEQYQGAPLKWADIKS 372

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +     A R L+ P+    IQG +K  + 
Sbjct: 373 LRS----KADRPLRAPMVTLCIQGGKKDKLR 399



 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
                R          +  G K K     L+  L    G++ + +G I +     +V   
Sbjct: 374 RSKADRPLRAPMVTLCIQGGKKDKLRPGDLLGALTGDGGLSFEQVGKINITEFNAYVALD 433

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYL 536
            +++      +  +    +  ++++L
Sbjct: 434 RQIAKQAFSRISNSNIKGRRFRMRFL 459


>gi|254380609|ref|ZP_04995975.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
 gi|194339520|gb|EDX20486.1| ATP-dependent RNA helicase [Streptomyces sp. Mg1]
          Length = 504

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 196/383 (51%), Gaps = 7/383 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P  +   L+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 75  VEAFADLDMPAQLLTTLTREGMATPFPIQAATLPNTLAGRDVLGRGRTGSGKTLAFGLAL 134

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       + + +  PLAL + PTRELA QV   L        + +A  +GG+ +HR+ 
Sbjct: 135 LAR---TAGQSAESGQPLALILVPTRELAQQVTAALTPYARAVKLRLATVVGGMPIHRQA 191

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    
Sbjct: 192 GALRAGAEVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRP 251

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 252 EGQRMLFSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKHRTTTE- 310

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R T+ L +   +  AL G  SQ +R+  L   + G   V 
Sbjct: 311 -IAARDGRVIMFLDTKHAVDRLTQDLLDSGVRAAALHGGKSQPQRTRTLARFKTGHVTVL 369

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 370 VATNVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMAR 429

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L + A ++ +     S +    R
Sbjct: 430 LMQAAGITPLTTQVRSGDEALNR 452


>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
          Length = 772

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 175/392 (44%), Gaps = 10/392 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + + +RGY   T +Q   +   L  +D++  A+TGSGKT  F + L   L    
Sbjct: 43  LSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKIRQ 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG+   + +GG ++  +   +     
Sbjct: 103 AKV----GARALILSPTRELALQTLKFIKELGRFTGLKATIILGGDNMENQFSAIHGNPD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGR         L +++++ VV DEAD + ++GF + I  I++  P+ R+ L+FS
Sbjct: 159 ILIATPGRFLHICIEMDLQLNNIEYVVFDEADRLFEMGFGEQINEIINRLPESRQTLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   AK    D V + +  EN+    +    ++     +      +        
Sbjct: 219 ATLPKLLVDFAKIGLNDPVLLRLDVENKIPEQLTLSFIICRPEQKLAILLCLLKNIIKNN 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T   V    ++L +       +   L    R       +  +  V I TDVA
Sbjct: 279 TQTVIFAATMHHVEYIHQILEKAGISNTYIYSNLDASARKINAAKFQTNKVHVLIVTDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 339 ARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIVSPDEYAYLLDLHLFLG 398

Query: 365 VSVVWEP----APSVEAIRERDAQRILQDPLF 392
            S+   P      + + I  +  Q ++++ L 
Sbjct: 399 RSLHIVPPSGSIQNTDGIIGKLPQAMIEEELV 430


>gi|17136814|ref|NP_476927.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|12643712|sp|Q07886|DDX49_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp45A;
           Short=DEAD box protein 45A
 gi|7303950|gb|AAF58994.1| DEAD box protein 45A [Drosophila melanogaster]
 gi|16185764|gb|AAL13957.1| LD47509p [Drosophila melanogaster]
          Length = 521

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 141/490 (28%), Positives = 220/490 (44%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   I   +      D    +  S+      +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFIKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++  A  
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA-A 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGL-------------CAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L   R +  D +R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLREIRRKRKLQHAEPAASEEGKALLQDERFKSVDSARFEKKGK 484

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 485 GRSRATQEDT 494


>gi|300854098|ref|YP_003779082.1| putative ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434213|gb|ADK13980.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 382

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 189/378 (50%), Gaps = 9/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + I E L + G      +Q   +   L  KDV+  ++TGSGKT+A+ + +   +  E+
Sbjct: 11  INEEITEGLKKEGIEYAAEIQYKAIPEALLGKDVVGESETGSGKTLAYIVPIFQKIDFES 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQN 123
                     A  +APT ELA+Q+   ++ L   +       A+        +       
Sbjct: 71  KDV------QAYILAPTHELAIQIHNVIKNLACNSDIPVRSAAIIGNVNIKRQVEILKNE 124

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             HIVVG+ GR+   I+ K L   ++K +V+DEAD++LD    +D++ I+ ++ K+R+++
Sbjct: 125 KPHIVVGSTGRILQLIKMKKLKSHNVKIIVVDEADKLLDKNNINDVKAIIKTTLKERQLM 184

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI      +A++  KD   +    +   + +I +   +    D+   +  ++    
Sbjct: 185 FFSATIDDRTLDIARDLMKDYKFIKAEQKTSMNENIKHMCFMCERRDKILILRKLVHILN 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K AIVF +    +   T+ L  H  +  A+ G   ++ R  AL+  + G+  + +A+D+
Sbjct: 245 PKRAIVFVNKPDEIEILTEKLKYHKLRAQAIYGAEDKKVRKRALESFKLGKINLLVASDI 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ D++ V   ++  +P+N LHRSGRT RAG++G S+ +I    Q+  ++  +  
Sbjct: 305 AARGLDIDDVDYVFSYDIPEDPDNYLHRSGRTARAGKEGTSICIITNKEQKLLKQYEKSF 364

Query: 364 NVSVVWEPAPSVEAIRER 381
           N+ +  +     + I  R
Sbjct: 365 NIKIDLKDIYKGKIIEHR 382


>gi|326924964|ref|XP_003208692.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Meleagris gallopavo]
          Length = 625

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 104/396 (26%), Positives = 185/396 (46%), Gaps = 17/396 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 211 FEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMK 270

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
           +L + +       P AL +APTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 271 VLNKTE------TPSALILAPTRELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHR 324

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL + +R   + +  +K VV+DE D ML +GF+  +  IL       
Sbjct: 325 LKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQVLDILQDISHDH 384

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI   I  LA     + VR+ I  +N   S++          +   +   I+N
Sbjct: 385 QTILVSATIPVGIEHLANQLLHNFVRIAIGEKNLPCSNVRQIILWVEEPSKKKKLFEILN 444

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      Q  ++  E SQ ER+  LQ +   +  V
Sbjct: 445 DKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEV 504

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G  G ++  I  N ++   
Sbjct: 505 IVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 564

Query: 358 RLFREANVSVVWEPA-----PSVEAIRERDAQRILQ 388
            + +    +    P      P +   + R+ QR+ Q
Sbjct: 565 DVVKRVKPTGTILPPQLLNSPYLHDQKRREQQRLKQ 600


>gi|213965889|ref|ZP_03394080.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
 gi|213951467|gb|EEB62858.1| dead/deah box helicase [Corynebacterium amycolatum SK46]
          Length = 454

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 3/365 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL++ G     ++QE  L   L   D++  A+TG GKT+ FG+ L   +  +    
Sbjct: 17  EICDALADEGITRTFAIQELTLPLALDGTDIIGQARTGMGKTLGFGVPLIDRVFDDARIP 76

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     A+ I PTREL VQVG +L      T + V    GG     +   L  G  I+V
Sbjct: 77  EPDGTARAIIIVPTRELCVQVGEDLARAAHSTNLRVCTIYGGRPYEEQIEQLDRGVDIIV 136

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  +   L +S +K +VLDEADEMLDLGF  DIE IL + P +R+ ++FSAT+
Sbjct: 137 GTPGRLIDLYQRNNLELSGVKILVLDEADEMLDLGFLPDIEKILAAVPDERQTMLFSATM 196

Query: 190 SPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              I        N        +   E   H             D+ + I  IL+ +G   
Sbjct: 197 PGPILTLARTFMNRPVHIRAESGEEEATVHETTKQIVFQSHQMDKVSVIARILQANGRGR 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+   +   + L E  F V A+ G++ Q  R  +L   R+G   V +ATDVAAR
Sbjct: 257 TIIFARTKRGAASVAEQLGERGFLVTAVHGDMGQPARERSLTAFRNGDVDVLVATDVAAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +    +HR GRTGRAG  G++V ++  +   + + +    ++ 
Sbjct: 317 GIDIDDVTHVINHQVPDDEMTYVHRIGRTGRAGHSGVAVTLVGWDETTKWKAISDALDLD 376

Query: 367 VVWEP 371
           +   P
Sbjct: 377 MAEIP 381


>gi|146305516|ref|YP_001185981.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
 gi|145573717|gb|ABP83249.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina ymp]
          Length = 458

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 137/410 (33%), Positives = 206/410 (50%), Gaps = 17/410 (4%)

Query: 1   MKI--FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M    F ++P    +   L+  GY  +T +Q A L   L+ +D++  A+TGSGKT AFG+
Sbjct: 1   MTTNAFASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGI 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVH 115
            L   L              AL + PTRELA QV +E+  L      +  +   GGV   
Sbjct: 61  GLLHPLNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFG 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++GAH++VGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I++ 
Sbjct: 115 PQIGSLEHGAHVIVGTPGRIQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQ 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P +R+ L+FSAT    I  LA  + +   RV           I+ R   +A   R  A+
Sbjct: 175 TPARRQTLLFSATYPAGIEQLAARFLRTPERV-EVEAQHDDGQIEQRFYEIAPGQRMEAV 233

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +LR+   +  + FC+TR         L        AL G+L Q++R   L +  +   
Sbjct: 234 STLLRHFRKQPVVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRDRDQILALFANRSL 293

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V +ATDVAARG+D+  LE+VI+ ELS + E  +HR GR+GRAG KG+++ ++      R
Sbjct: 294 SVLVATDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGEKGLALSLVAPAEAGR 353

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           A+ +       + W P P+ +A  E      L  P+    I    K  + 
Sbjct: 354 AQAIETLQGRELAWYPLPAAKASGE-----PLLPPMHTLCIAAGRKDKLR 398



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  ++ G K K     ++  L   +G+    +G I +     +V    +V+   + 
Sbjct: 382 PPMHTLCIAAGRKDKLRPGDILGALTGDAGLPGSQVGKIALFDYQAYVAVERDVARQALK 441

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       + ++++ L
Sbjct: 442 RLSEGKIKGRSLRVRLL 458


>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
           reilianum]
          Length = 932

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 127/503 (25%), Positives = 226/503 (44%), Gaps = 43/503 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +  ALS   +   T +Q   +   L  KD++  A TGSGKT AF +     L   
Sbjct: 339 SLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTLERLTWR 398

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +  +    L +APTRELA+Q     + +   T +   +C+GG+SV  +  +L+   
Sbjct: 399 AKGRAQEAKTRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLRP 458

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRML 183
            +V+ TPGRL DH+R      +  ++ +V+DEAD ML+ GF D++ E +       R+ +
Sbjct: 459 EVVIATPGRLIDHVRNSASFTLDDVEILVMDEADRMLEDGFADELNEIVKSCPKGARQTM 518

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-------------- 229
           +FSAT++  +  L +   K  VR+ +  +      +    V V  S              
Sbjct: 519 LFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGSGPGGVAGADGLAGV 578

Query: 230 ----------------DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
                            R   ++ +         I+F  ++    +   V          
Sbjct: 579 GDEPSTSTVGKRSEDAQRPALLLALCTRTFTSQVIIFVRSKKLAHQLKIVFGLLGLSAGE 638

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G+LSQ++R +AL   RDG+    +ATD+A+RG+D+  ++ VI+ ++    E  LHR G
Sbjct: 639 LHGDLSQEQRIDALTDFRDGKVDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVG 698

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAE-RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           RT RAGR G +V ++ +  +R  +  + + +   +     P+  A+  +  + + Q    
Sbjct: 699 RTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPA--AVASKMLETLEQLKPE 756

Query: 393 LDSIQGDEKKMVDVLLAKHDP---EKIAA----GFLRIHRAGLCAPEEITPVSLVSGRDR 445
           +D++  +EK+   + +A+ +    E +AA     F R  R       +    +LVS + +
Sbjct: 757 VDAVLREEKEEKALRIAEMELKKGENMAAHADEIFARPKRTWFQTGADKQQAALVS-KAQ 815

Query: 446 FRDDSRAFKVGGGSRDNFKGSSW 468
           +     A K G   RD + G S 
Sbjct: 816 YEASMDAAKKGKEGRDKYAGLSR 838


>gi|199598083|ref|ZP_03211506.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|258507759|ref|YP_003170510.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|199591009|gb|EDY99092.1| Superfamily II DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|257147686|emb|CAR86659.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus GG]
 gi|259649106|dbj|BAI41268.1| ATP-dependent DNA and RNA helicase [Lactobacillus rhamnosus GG]
          Length = 448

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 108/445 (24%), Positives = 195/445 (43%), Gaps = 13/445 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   G    T +Q+ ++   LR ++++  +QTGSGKT AF + L S +    
Sbjct: 10  LKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSLVDPNE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           D      A   +  AP+RELA Q+    + L        +  +  G     +  +   + 
Sbjct: 70  D------ATQVVITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQAHQ 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+ +GTPGR+ D I+   L  + ++  V+DEAD  LD+GF + ++ I  S P+  +M +
Sbjct: 124 PHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQMAV 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   +    + Y      + +  ++     ++   + V   D++  I  ++     
Sbjct: 184 FSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAVKGRDKNELIYQLVTMGHP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  +ATD+A
Sbjct: 244 FLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGIQPRERRRIMKEVADLKYQYVVATDLA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + +VI+AE+  + E  +HR GRTGR G  G ++ +     + +   L     
Sbjct: 304 ARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQIAELE-HMG 362

Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    +     E +    R R  QR  +      +I+G  KK     +  +  +   A  
Sbjct: 363 IKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTAVL 422

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR 445
           L   R    A  +         R R
Sbjct: 423 LERKRNAKVARRQALLAEKRKHRKR 447


>gi|169853643|ref|XP_001833501.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
 gi|116505540|gb|EAU88435.1| DEAD-box protein abstrakt [Coprinopsis cinerea okayama7#130]
          Length = 619

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 188/404 (46%), Gaps = 19/404 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    IP  I + L  +   N T +Q   +      +D++  A TGSGKT+AF + L  
Sbjct: 189 MK----IPDPILQYLKSKNIKNPTPIQLQGIPAAFSGRDIIGIAFTGSGKTLAFCMPLIM 244

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGG 111
             L E  +  F     P+ + + P+RELA Q    ++              +   +CIGG
Sbjct: 245 LALEEEAKLPFVQGEGPVGIILCPSRELASQTYENIQTWCTSLSQSGKYPQLNCLLCIGG 304

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           VS+  + R L  G HIVV TPGRL D +  K    ++ K + +DEAD M+DLGF DD+  
Sbjct: 305 VSMSEQSRVLNKGLHIVVATPGRLIDMLEKKRFTFNNCKYLCMDEADRMIDLGFEDDVRN 364

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+    ++R+ L+FSAT+   I   A       + VN+      + D+      V    +
Sbjct: 365 IMSFFKRQRQTLLFSATMPKKIQDFATESLIKPILVNVGRAGAANLDVLQVVEYVKQEAK 424

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       I+F   +  V    + L     + VA+ G  +Q+ER  A++  +
Sbjct: 425 MVYLLECLQKTPPP-VIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKAFK 483

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            G   V +A+ VA++G+D  D++ VI   +    E+ +H+ GRTGR+G+ G++   +   
Sbjct: 484 SGAKDVMVASGVASKGLDFNDIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFVNMN 543

Query: 349 -PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
            P+      + L  EA   V      S+E  R    + +   P+
Sbjct: 544 TPEQTLLDLKYLLIEAGQKVPPF-LASIEDPRVAQGRSVQGCPV 586


>gi|321473575|gb|EFX84542.1| hypothetical protein DAPPUDRAFT_223010 [Daphnia pulex]
          Length = 869

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 190/401 (47%), Gaps = 8/401 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++IP  +   + L +  Y   T VQ+  +   LR  DVL +A+TGSGKT+AF + +   
Sbjct: 69  FKDIPLSKKTLQGLQQNEYTTPTEVQKESIVLALRGLDVLGAAKTGSGKTLAFVIPVLER 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L      ++      AL I PTRELA Q+      +  +      + IGG  ++ ER+ L
Sbjct: 129 LYCMQ--WTRLDGLGALIITPTRELAYQIFETFRKVGIQHDFSAGLIIGGKDLNFERKRL 186

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L         + S+L+ +V+DEAD  LDLGF+  +  I+++ P KR+
Sbjct: 187 DQCNIMICTPGRVLHHMDENPLFDCSNLQILVIDEADRCLDLGFQQTMNGIIENLPPKRQ 246

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD V V++    +  +        ++  + ++ + + + L
Sbjct: 247 TLLFSATQTKSVKDLARLSLKDPVYVSVHENAQYSTPESLRQSYIITPIQNKVDILWSFL 306

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R H  K  IVF ++   V    +        +  L+   +  +       +   + +  V
Sbjct: 307 RSHRKKKLIVFLTSCKQVRFIHQAFTRLRPGLSVLALYGTMHQMKRMSVYEEFCEKQTAV 366

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P+++ VI  +   +P + +HR+GRT R  + G S+ ++  + +   E
Sbjct: 367 LFATDIAARGLDFPNVDWVIQMDCPDDPSSYIHRAGRTARYQKGGESLLMLLPSEEAMVE 426

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           +L ++       E  PS     +R  + +L   + L  +  
Sbjct: 427 QLAQKKIPIQKIEVNPSKLVSIQRKLEAMLARDVELKQMAQ 467


>gi|319947567|ref|ZP_08021797.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
 gi|319746255|gb|EFV98518.1| ATP-dependent RNA helicase DbpA [Streptococcus australis ATCC
           700641]
          Length = 447

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 113/466 (24%), Positives = 193/466 (41%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +      I EAL E  ++  T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTDFKFKDYIQEALKEINFIEATEVQEKLIPIVLAGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHR 116
            TL  ++           +  AP+RELA Q+ +    + +     V +           +
Sbjct: 61  QTLNEDSSHVE------VVITAPSRELATQIYQAARQIASHCEKEVRIANYVGGTDKARQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +      HIV+GTPGR+ D +    L I      V+DEAD  LD+GF   ++ I  S 
Sbjct: 115 IDKLQIAQPHIVIGTPGRIYDLVASGDLAIHKAHTFVVDEADMTLDMGFLTTVDKIASSL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+ + L+FSATI   +    K Y  + V   I ++      ID   V     D++  I 
Sbjct: 175 PKQLQFLVFSATIPQKLQPFLKKYLSNPVMEQIKTKTVISDTIDNWLVSTKGRDKNEQIY 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +      A++F +T+         L E   +V  + G +  +ER   +  +++    
Sbjct: 235 QLTQALQPYLAMIFVNTKDRADDLHAFLVEKGLKVAKIHGGVPPRERKRIMNQVKNLDFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITLYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             L +   + + + P             ++L+     D+   D +   +    K D E I
Sbjct: 355 RELEK---LGIQFVP-------------KVLKAGAIEDTYDRDRRANREKRQEKLDIEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R   R ++RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIKWAVDEKRRKAKRAENRARGRAERKAKR 444


>gi|81427999|ref|YP_394998.1| putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609640|emb|CAI54686.1| Putative ATP-dependent DNA/RNA helicase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 451

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 111/447 (24%), Positives = 193/447 (43%), Gaps = 14/447 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL E  +   T+VQ  ++      K V+  +QTGSGKT AF L L + L+ E
Sbjct: 9   NLKPEIITALDEMHFTKPTAVQRRVIPAINAGKSVIGQSQTGSGKTHAFLLPLLNKLVPE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRERRDLQ 122
            D          +  AP+RELA Q+    E +         +     G     +  +  Q
Sbjct: 69  KDEV------QIVITAPSRELAYQIYTAAELITKHMNGDIRIGRYVGGTDKQRQIEKLQQ 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +   IV+GTPGR+ D I  K L I   K +V+DEAD  LD+GF   ++ I    P+  +M
Sbjct: 123 HQPQIVIGTPGRILDLITSKALKIYTAKTLVIDEADMTLDMGFLKPVDNIASRLPEDLQM 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSATI   +    + Y  + V   + +E      I+   V       +  I +++   
Sbjct: 183 MVFSATIPDKLQPFLQKYMHNPVIEEVKNETIISPTIENWLVPTKGKALNQTIYSLITMG 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F +T++ V      L     +V  + G++  ++R   ++ + +   +  +ATD
Sbjct: 243 HPFMVLIFANTKSKVDDIHHYLQSQGLKVAKIHGDIPPRQRKRIMKEVHNLDYQYVVATD 302

Query: 303 VAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +AARGID+  + +VI+AE+   + E  +HR GRTGR G KG ++ +   + ++   ++  
Sbjct: 303 LAARGIDIEGISMVINAEVPREDLEFFVHRVGRTGRNGLKGTAITLYGPDDEQAVAQIE- 361

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP---EKIAA 418
              +    +     E +   D  R  +       +  + K  V     K  P   +KI  
Sbjct: 362 AMGIKFTPKAFKDGELVTSYDRNRRKKRVATTHELDVNLKGFVKKAKIKRKPGYKKKIKE 421

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDR 445
              +  R      + +          +
Sbjct: 422 AIQKDARQKRRIEQRVEMRERKRNNKK 448


>gi|225463253|ref|XP_002274688.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 549

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 190/395 (48%), Gaps = 13/395 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA- 57
            K F    +P  + E    R +   + +Q       L  +D +  A TGSGKT+AFG+  
Sbjct: 130 FKSFAESKLPDDVLECC--RNFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPA 187

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L     + S    PL L ++PTRELA Q+   L       GV      GG S   +
Sbjct: 188 MMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQ 247

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IV+GTPGRL D I      ++ +  VVLDEAD MLD+GF  ++  IL  + 
Sbjct: 248 ISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTC 307

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-- 235
             R+M+MFSAT    +  LA+ +        +       ++ D   ++  L DR      
Sbjct: 308 PARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERL 367

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +           +VF   +   +R   +L    + VV++ G+ +QQ R+ AL + + 
Sbjct: 368 LTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKK 427

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + IATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  
Sbjct: 428 GSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 487

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           +  A  L    +EA   V  +       +++++++
Sbjct: 488 KGLAGELVNVLKEAGQIVPADLLKFGTHVKKKESK 522


>gi|147777235|emb|CAN76636.1| hypothetical protein VITISV_010658 [Vitis vinifera]
          Length = 539

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 190/395 (48%), Gaps = 13/395 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA- 57
            K F    +P  + E    R +   + +Q       L  +D +  A TGSGKT+AFG+  
Sbjct: 120 FKSFAESKLPDDVLECC--RNFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPA 177

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L     + S    PL L ++PTRELA Q+   L       GV      GG S   +
Sbjct: 178 MMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQ 237

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IV+GTPGRL D I      ++ +  VVLDEAD MLD+GF  ++  IL  + 
Sbjct: 238 ISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTC 297

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-- 235
             R+M+MFSAT    +  LA+ +        +       ++ D   ++  L DR      
Sbjct: 298 PARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERL 357

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +           +VF   +   +R   +L    + VV++ G+ +QQ R+ AL + + 
Sbjct: 358 LTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKK 417

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + IATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  
Sbjct: 418 GSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 477

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           +  A  L    +EA   V  +       +++++++
Sbjct: 478 KGLAGELVNVLKEAGQIVPADLLKFGTHVKKKESK 512


>gi|119944643|ref|YP_942323.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863247|gb|ABM02724.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 439

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 107/420 (25%), Positives = 208/420 (49%), Gaps = 8/420 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           + +++P  + +  +LS  G+   T +Q   +   +  KD+L S++TGSGKT+A+ L    
Sbjct: 2   LIDDLPVDRRLIISLSHLGFTETTEIQAKAVPIAVAGKDLLASSKTGSGKTLAYLLPAMQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L    R      P  L + PTRELA QV  +L  L + T +   +  GG + + + + 
Sbjct: 62  RVL--KTRALTKRDPRVLILTPTRELAKQVYAQLRLLVSNTSLKSTLVSGGENFNDQVKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    H VVGTPGR+ DH++   L++  L+ ++LDEAD MLDLGF + ++ +  ++  + 
Sbjct: 120 LDKDPHFVVGTPGRIVDHLKKGLLHLEGLELLILDEADRMLDLGFAEQLKAVNSAANHRL 179

Query: 181 RM---LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R       +   +      ++  +            +         +   L+ ++  + +
Sbjct: 180 RQTLLFSATLGHAEVNEFASELLKAPVRIAIGEENQQHSEISQRFYLADNLNQKEKLLFH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            ++    K AI+F +TR    R +  L+E  +  +AL G+L+Q  R++ +     G+A++
Sbjct: 240 FIKNEEIKQAIIFTATRLDAQRLSAALSEKGYGTLALHGDLTQNNRNSIMDSFSRGKAQL 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+A+RG+DL ++  VI+ ++  + E  +HR GRTGRAG KG ++ +I        +
Sbjct: 300 LVTTDIASRGLDLLNVSHVINFDIPKHTEEYIHRIGRTGRAGEKGDAISIIGPKDWVNFK 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHDPEKI 416
           ++       + +     ++   +   +++++ P   + S + ++K+       K  P KI
Sbjct: 360 KVEEFVQRQLTFNRVDGIKPQFKGIVEKVVKAPETKVVSHKAEKKQSSKTRKPKAAPNKI 419


>gi|23308803|ref|NP_599999.2| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389660|ref|YP_225062.1| ATP-dependent RNA helicase protein [Corynebacterium glutamicum ATCC
           13032]
 gi|21323537|dbj|BAB98164.1| Superfamily II DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324995|emb|CAF19476.1| PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 424

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 178/364 (48%), Gaps = 2/364 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL   G     ++QE  L   L   D +  A+TG GKT  FG+ L   +    D  
Sbjct: 18  EITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVA 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL I PTRELAVQVG +L+       + +    GG     +   L+ G  +VV
Sbjct: 78  ETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVV 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  +   L++  +  +VLDEADEMLDLGF  DIE IL +   + + ++FSAT+
Sbjct: 138 GTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197

Query: 190 SPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             AI T   +   +   +R   +  +  H             D++     IL+       
Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTRQVVFQAHKMDKEAITAKILQSKDRGKT 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + +ATDVAARG
Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++  +   +   +  E  +  
Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTVIDNELELGQ 377

Query: 368 VWEP 371
              P
Sbjct: 378 PNPP 381


>gi|238894460|ref|YP_002919194.1| ATP-dependent RNA helicase DbpA [Klebsiella pneumoniae NTUH-K2044]
 gi|238546776|dbj|BAH63127.1| ATP-dependent RNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 457

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 129/388 (33%), Positives = 198/388 (51%), Gaps = 11/388 (2%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P      L+E GY+++T VQ A L   L  KDV V A+TGSGKT AFGL 
Sbjct: 1   MTAFSTLTVLPAAQLANLNELGYLSMTPVQAAALPAILGRKDVRVQAKTGSGKTAAFGLG 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +              +L +  TRELA QV  EL  L      +  + + G      
Sbjct: 61  LLQHIDPAR------FETQSLVLCTTRELADQVAGELRRLARCLPNIKILMLCGGQPFGA 114

Query: 118 RRDL-QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +RD  Q+  HI+V TPGRL DH++   +++  L+ +V+DEAD MLD+GF D I+ ++  +
Sbjct: 115 QRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFA 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P  R+ L+FSAT   AI  ++   Q++   + I + +   +       +     +   + 
Sbjct: 175 PADRQTLLFSATWPAAIAAISGRVQRNPQTIEIDTVDALPAIEQQFFEVSRHG-KIALLQ 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L  H   + +VFC+T+         L       ++L G+L Q++R   L    +G  R
Sbjct: 234 RLLSQHQPASCVVFCNTKRDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSVR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LV++ EL+ +PE  +HR GRT RAG +G+++        +RA
Sbjct: 294 VLVATDVAARGLDIKSLALVVNFELAWDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRA 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ 384
             L     +S+ W PAP+   I    A+
Sbjct: 354 TILADMLQLSLNWLPAPTGNTIAPLTAE 381



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    ++++   +   +      G       
Sbjct: 320 WDPEVHVHRIGRTARAGEQGLAISFCAPEEAQRATILADMLQLSLNWLPAPTGNTIAPLT 379

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G +   IG I V P   +V +  +      +
Sbjct: 380 AEMATLCIDGGKKAKMRPGDVLGALTGDMGFDGADIGKITVHPAHVYVAIRQNMAQKAYK 439

Query: 524 TVKLDK 529
            ++  K
Sbjct: 440 QLQNGK 445


>gi|255101237|ref|ZP_05330214.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-63q42]
          Length = 381

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     + + L ++   + T VQ  ++   ++ KD+L+++QTG+GKT+A+ L +
Sbjct: 1   MNTFEQLKISSTLIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVH 115
              +       +      AL +APT EL +Q+  ++E L      +   +A+        
Sbjct: 61  FEKID------TSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEVNIQK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +       HIV+G+ GR+ D I+ K L   ++K ++LDE D +L+      IE I+ +
Sbjct: 115 QIKNIKAVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIILDEVDNLLNGKNITCIEDIIRT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+++  SA+++ +   +     K+   +    +++ + +I++  +L  + D+   +
Sbjct: 175 TLRDRQIIGCSASLTDSTIKICDKLMKEFEIIKTKEKSQINPNINHSYLLGEIRDKFTFL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L     K AIVF +   ++      L  H ++ + + G + +++R NA+   + G+A
Sbjct: 235 RKALAATNPKKAIVFVNNEKNIEVLVSKLNYHNYKAIGIFGNMEKEDRKNAINKFKLGKA 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ I TD++ARG+D+ D+  V + +   +    LHR GRT R  R G ++ +I +     
Sbjct: 295 KILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTARGNRSGNTISIITKKELDI 354

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + L +E N+ +  +   + E I
Sbjct: 355 IKDLQKEFNIVITPKTLQNGELI 377


>gi|297191502|ref|ZP_06908900.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722058|gb|EDY65966.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 502

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 188/365 (51%), Gaps = 7/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL+ +G      +Q A L   L  +DVL   +TGSGKT+AFGLA+ + 
Sbjct: 75  FADLDMPEQLLAALAAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAMLA- 133

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 + +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L
Sbjct: 134 --GTAGKRAEPRLPLALVLVPTRELAQQVTDALTPYARSLKLRLATVVGGMSIGRQAGAL 191

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++GA +VV TPGRL D I+     +  +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 192 RSGAEVVVATPGRLKDLIQRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPDGQ 251

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 252 RMLFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVDSADKHATTTE--IA 309

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R TK L     +   L G  SQ +R+  L   + G   V +AT
Sbjct: 310 ARDGRVIMFLDTKHAVDRLTKDLLNSGVRAAGLHGGKSQPQRNRTLTQFKSGHVTVLVAT 369

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   RL  
Sbjct: 370 NVAARGIHVDNLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRRDMARLLT 429

Query: 362 EANVS 366
            A V 
Sbjct: 430 HAGVR 434


>gi|66475700|ref|XP_627666.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|32398898|emb|CAD98363.1| dead box RNA helicase, possible [Cryptosporidium parvum]
 gi|46229099|gb|EAK89948.1| Rok1p, eIF4A-1-family RNA SFII helicase [Cryptosporidium parvum
           Iowa II]
 gi|323508863|dbj|BAJ77324.1| cgd6_3210 [Cryptosporidium parvum]
          Length = 480

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 170/373 (45%), Gaps = 13/373 (3%)

Query: 6   NIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+P  + + +     Y   T++Q  ++       D+LV + TGSGKT+ + L +   L  
Sbjct: 94  NLPDWVLDNIMNILKYQKPTAIQSQVIPLLFSGVDLLVQSPTGSGKTLCYILPILGRL-- 151

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +ND+   A+    L ++PTRELA Q+ RE++ +    G           + + +      
Sbjct: 152 KNDKVYCAN----LILSPTRELAQQIVREIKIILDIHGKKYRCRYISGKIDKAQESNTKR 207

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR---- 180
             I V TP RL D  R   +N+     +VLDE D++LD+GF   I+ IL  S   +    
Sbjct: 208 LDIAVSTPYRLADICRNNIINLQGCSMIVLDEVDKLLDMGFAPQIDEILSHSNIPKGGKV 267

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++  FSAT+   +  LA +  K  V+V +       S I    V V   D     +  L 
Sbjct: 268 QIAAFSATLPQIVINLADSIMKSPVKVTLGHRLAASSTIIQELVCVTKDDAKIESLRQLI 327

Query: 241 YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             G      +VF +++    R  K L      V A+  ++ + +R N +Q  R G+  + 
Sbjct: 328 KQGKIMLPTLVFTNSKDDAQRLFKKLMYDNLIVEAIHSDMPKVKRDNIIQRFRTGKIWIL 387

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+ ARG+D  ++  V++ +   +P N +HR GR GRAGR G ++         + + 
Sbjct: 388 ICTDLMARGVDFKNVSCVVNYDFPHSPSNYIHRVGRCGRAGRTGYAITFFTLRDIPKIKS 447

Query: 359 LFREANVSVVWEP 371
           + +    S    P
Sbjct: 448 IAKVIKSSGADVP 460


>gi|330976959|gb|EGH76980.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 459

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  +     ++         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKF-MRDPQIVKVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLDQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
 gi|118595360|sp|Q1E2B2|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
          Length = 840

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 210/473 (44%), Gaps = 21/473 (4%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F+N  + + I   L+  G+   T +Q   +   L  KD++  A TGSGKT AF + + 
Sbjct: 319 STFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFIIPIL 378

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 379 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 435

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL++ PK
Sbjct: 436 VLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILNTIPK 495

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ ++  L +      VR+ + S+      +              R   +
Sbjct: 496 SRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDSKKHTVGTLVQEFVRLRPGREGKRMGYL 555

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +         IVF   +    R   +      +   L G +SQ++R NA++  RDG+ 
Sbjct: 556 VLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRINAVEAFRDGKV 615

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 616 PFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 675

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +   +          +  V+ A+ +  A ++ +    ++ I  +EK+           +
Sbjct: 676 VKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKE----------EK 725

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           ++A   +++ R G    +  + +     R  F  +    +    +     G  
Sbjct: 726 QLAQAEMQVKR-GQNLIKHGSEIMARPKRTWFETEREKREAKKRALSELNGPD 777


>gi|311271292|ref|XP_003133100.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Sus scrofa]
          Length = 738

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 140 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLS--VACFYGGTSYQSQINHI 257

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 436

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 437 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 496

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 497 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527


>gi|285019640|ref|YP_003377351.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283474858|emb|CBA17357.1| putative atp-dependent rna helicase protein [Xanthomonas
           albilineans]
          Length = 570

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 188/371 (50%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L  +DV   AQTG+GKT+AF +A+ + LL+ 
Sbjct: 15  DLQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKTLAFLVAVMNRLLSR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E+   + +  R    A  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPADEEKLTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  + ++V  LSG++ Q++R   L   + G+  + + T
Sbjct: 255 SEGARTMVFVNTKAFVERVARALERNGYRVGVLSGDVPQKKRETLLNRFQKGQLEILVVT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPA 372
                +  EP 
Sbjct: 375 YIEQKIPVEPV 385


>gi|281490952|ref|YP_003352932.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281374710|gb|ADA64230.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactococcus
           lactis subsp. lactis KF147]
          Length = 446

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 108/467 (23%), Positives = 206/467 (44%), Gaps = 27/467 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N    I + L    +   T VQE ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQENLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRE 117
             +  + D         A+  AP+RELA Q+ +  +        +       G     + 
Sbjct: 61  QKIDTDLDEV------QAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++   +  H+V+GTPGR+ D I    L +      V+DEAD  LD+GF  D++ I  S  
Sbjct: 115 KKLESSQPHVVIGTPGRIHDLINSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y  + V   IA++      I+   V    S  +  ++ 
Sbjct: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+  V      L  +  +V  + G++  +ER   +  +++   + 
Sbjct: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  +I+ E+  +    +HR GR+GR G +G ++ +   +      
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +   + V ++P             + ++D   +DS   D ++       +   + I 
Sbjct: 355 EIEK---MGVTFQP-------------KAIKDGEIVDSYDRDRREKRTKKQDEISTKTIG 398

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
           A  L+  +  +    +      +   ++ +  +   K    +RD+ K
Sbjct: 399 A--LKKGKKHVKPGYKRAIKWQIEEDNKKKRRAERNKNARKTRDSRK 443


>gi|121486020|gb|ABM54889.1| ATP-independent RNA helicase [Escherichia coli]
          Length = 437

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 192/368 (52%), Gaps = 8/368 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      A
Sbjct: 1   MGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
           L + PTRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL 
Sbjct: 55  LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +             +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLRRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 293

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ EL+ +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  
Sbjct: 294 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 353

Query: 377 AIRERDAQ 384
           +I   +A+
Sbjct: 354 SIVTLEAE 361



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 300 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 359

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 360 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 419

Query: 524 TVKLDK 529
            ++  K
Sbjct: 420 QLQGGK 425


>gi|126699723|ref|YP_001088620.1| putative ATP-dependent RNA helicase [Clostridium difficile 630]
 gi|115251160|emb|CAJ68991.1| putative ATP-dependent RNA helicase [Clostridium difficile]
          Length = 381

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     + + L ++   + T VQ  ++   ++ KD+L+++QTG+GKT+A+ L +
Sbjct: 1   MNTFEQLKISSTLIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVH 115
              +       +      AL +APT EL +Q+  ++E L      +   +A+        
Sbjct: 61  FEKID------TSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEVNIQK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +       HIV+G+ GR+ D I+ K L   ++K +VLDE D +L+      IE I+ +
Sbjct: 115 QIKNIKAVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+++  SA+++ +   +     K+   +    +++ + +I++  +L  + D+   +
Sbjct: 175 TLRDRQIIGCSASLTDSTIKICDKLMKEFEIIKTKEKSQINPNINHSYLLGEIRDKFTFL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L     K AIVF +   ++      L  H ++ + + G + +++R NA+   + G+A
Sbjct: 235 RKALAATNPKKAIVFVNNEKNIEVLVSKLNYHNYKAIGIFGNMEKEDRKNAINKFKLGKA 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ I TD++ARG+D+ D+  V + +   +    LHR GRT R  R G ++ +I +     
Sbjct: 295 KILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTARGNRSGNTISIITKKELDI 354

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + L +E N+ +  +   + E I
Sbjct: 355 IKDLQKEFNIVITPKTLQNGELI 377


>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 116/372 (31%), Positives = 191/372 (51%), Gaps = 16/372 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   ++  G+V  T +Q A++   L  +D+  SA TGSGKT AF L +   LL  
Sbjct: 5   SLSRPLLRGVAAMGFVKPTPIQAAVIPLALAGRDICASAVTGSGKTAAFLLPILERLLHR 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQNG 124
               +      A+ + PTRELA Q    L      T +  ++ +GG  +V+ +  +L++ 
Sbjct: 65  YSGRTK-----AIILTPTRELAAQCLGMLTSFAQFTNLRASLIVGGAKNVNAQAAELRSR 119

Query: 125 AHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             ++V TPGRL DHI          ++ +VLDEAD +LDLGF+D++  ++ + P +R+ L
Sbjct: 120 PDVIVATPGRLLDHITNSAGVTLEDIEILVLDEADRLLDLGFQDEVHELVKACPVQRQTL 179

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH---------SDIDYRAVLVALSDRDNA 234
           +FSAT++  +  L +   K  VRV I+ +              +          ++R+  
Sbjct: 180 LFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVRAGNEGANREGM 239

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L     K  IVF  T+A+  R   +      +   L G LSQQ+R  AL+  R G 
Sbjct: 240 LLALLTRTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLSQQQRLTALEEFRKGD 299

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+AARG+D+  ++ VI+ E+ S     +HR GRT RAGR G S  +I +  + 
Sbjct: 300 VDVLLATDLAARGLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRRH 359

Query: 355 RAERLFREANVS 366
             + L ++A V 
Sbjct: 360 LMKELIKDAEVK 371


>gi|119946657|ref|YP_944337.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119865261|gb|ABM04738.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 453

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 188/382 (49%), Gaps = 11/382 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   + Q +  A+++ G+   TS+Q   +   + E+D++ SA TG+GKT+AF L    
Sbjct: 2   SFEALELDQHLLNAIAKMGHTRPTSIQTLAIPLAMDERDIMASAPTGTGKTLAFLLPAVQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L+    R     +   L + PTRELAVQ+      L   T +VV   IGGVS   +   
Sbjct: 62  RLIDFPRR--KGGSARILILTPTRELAVQISGVASALVEGTQLVVGNIIGGVSYQEQEEV 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + +   IV+ TPGRL ++I  +  +   ++ ++LDEAD MLD+GF   ++ I+  +  ++
Sbjct: 120 ITDSVDIVIATPGRLMEYIDSEAFDCREVETLILDEADRMLDMGFIKAMDRIVGETRWRK 179

Query: 181 RMLMFSATISPAI-TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--- 236
              +FSAT+         ++  ++  ++      R+   I     L    +    ++   
Sbjct: 180 HTALFSATLEGRGLREFCRDVLRNPAQLTAEVSRRESGKILQWVHLADSPEHKLQLLAAI 239

Query: 237 ---NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
               +      +  IVF  TR  ++     LAE       L GE+ Q++R+ AL   R G
Sbjct: 240 LEQPVKEEEQQQKVIVFVKTRDRLTELVAQLAELQIPCTYLRGEMDQEKRNLALNQFRAG 299

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + IATDVAARGID+PD+  VI+ ++  + +  +HR GRT R G+KG+++ +I  +  
Sbjct: 300 NINILIATDVAARGIDVPDITHVINYDMPRSADIYVHRIGRTARGGKKGIAISLIEAHDV 359

Query: 354 RRAERLFREANVSVVWEPAPSV 375
               ++ R  +  +      ++
Sbjct: 360 DMLAKVERYTDQIIKRRVVKTL 381


>gi|258538949|ref|YP_003173448.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
 gi|257150625|emb|CAR89597.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus Lc 705]
          Length = 448

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 194/445 (43%), Gaps = 13/445 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   G    T +Q+ ++   LR ++++  +QTGSGKT AF + L S +    
Sbjct: 10  LKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSLVDPNE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           D      A   +  AP+RELA Q+    + L        +  +  G     +  +   + 
Sbjct: 70  D------ATQVVITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQAHQ 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+ +GTPGR+ D I+   L  + ++  V+DEAD  LD+GF + ++ I  S P+  +M +
Sbjct: 124 PHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQMAV 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   +    + Y      + +  ++     ++   +     D++  I  ++     
Sbjct: 184 FSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAAKGRDKNELIYQLVTMGHP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  +ATD+A
Sbjct: 244 FLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKYQYVVATDLA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + +VI+AE+  + E  +HR GRTGR G  G ++ +     + +   L     
Sbjct: 304 ARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQIAELE-HMG 362

Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    +     E +    R R  QR  +      +I+G  KK     +  +  +   A  
Sbjct: 363 IKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTAVL 422

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDR 445
           L   R    A  +         R R
Sbjct: 423 LERKRNAKVARRQALLAEKRKHRKR 447


>gi|296806541|ref|XP_002844080.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
 gi|238845382|gb|EEQ35044.1| ATP-dependent RNA helicase DBP4 [Arthroderma otae CBS 113480]
          Length = 803

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 99/401 (24%), Positives = 186/401 (46%), Gaps = 13/401 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +     LS   +  LT +Q   +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 49  IESFTDLPLSEPTRLGLSASHFKTLTDIQARGIPHALQGRDILGAAKTGSGKTLAFLVPV 108

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELA+Q+   L  +         + IGG S+  E+
Sbjct: 109 LENLF--RKQWTEYDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQ 166

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    +  +++ +VLDEAD ++D+GF+  ++ I++  PK
Sbjct: 167 ERLGRMNILVCTPGRMLQHMDQTAAFDTDNIQMLVLDEADRIMDMGFQSTVDAIVEHLPK 226

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  ++          + + V+ A+ +   S +    V+  L D+ + + 
Sbjct: 227 ERQTMLFSATQTKKVSDLARLSLRDPEYISVHEAASSATPSTLQQHYVVTPLPDKLDTLW 286

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGR 294
           + +R       IVF S+   V    +   +    +  L     Q++ +           +
Sbjct: 287 SFIRSSLKSKIIVFFSSSKEVRFVYEAFRQMQPGIPLLHLHGRQKQGARVDITHKFSTSK 346

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQ 353
                ATDV ARG+D P ++ VI  +   + +  +HR GRT R  R G +V  + P    
Sbjct: 347 NSCLFATDVVARGLDFPAVDWVIQLDCPEDSDTYIHRVGRTARYERDGRAVLFLDPSEEI 406

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
               RL ++    +  E   ++ A +++  +  LQ+  F D
Sbjct: 407 GMLSRLEQK---KIPIEKI-NIRANKQQSIKHQLQNMCFKD 443


>gi|255972909|ref|ZP_05423495.1| helicase [Enterococcus faecalis T1]
 gi|256618957|ref|ZP_05475803.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256762384|ref|ZP_05502964.1| helicase [Enterococcus faecalis T3]
 gi|256958868|ref|ZP_05563039.1| helicase [Enterococcus faecalis DS5]
 gi|256962038|ref|ZP_05566209.1| helicase [Enterococcus faecalis Merz96]
 gi|256965236|ref|ZP_05569407.1| helicase [Enterococcus faecalis HIP11704]
 gi|257078900|ref|ZP_05573261.1| helicase [Enterococcus faecalis JH1]
 gi|257085363|ref|ZP_05579724.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|257086858|ref|ZP_05581219.1| helicase [Enterococcus faecalis D6]
 gi|257089771|ref|ZP_05584132.1| helicase [Enterococcus faecalis CH188]
 gi|257415987|ref|ZP_05592981.1| helicase [Enterococcus faecalis AR01/DG]
 gi|257422733|ref|ZP_05599723.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294779570|ref|ZP_06744964.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300861181|ref|ZP_07107268.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|255963927|gb|EET96403.1| helicase [Enterococcus faecalis T1]
 gi|256598484|gb|EEU17660.1| helicase [Enterococcus faecalis ATCC 4200]
 gi|256683635|gb|EEU23330.1| helicase [Enterococcus faecalis T3]
 gi|256949364|gb|EEU65996.1| helicase [Enterococcus faecalis DS5]
 gi|256952534|gb|EEU69166.1| helicase [Enterococcus faecalis Merz96]
 gi|256955732|gb|EEU72364.1| helicase [Enterococcus faecalis HIP11704]
 gi|256986930|gb|EEU74232.1| helicase [Enterococcus faecalis JH1]
 gi|256993393|gb|EEU80695.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
 gi|256994888|gb|EEU82190.1| helicase [Enterococcus faecalis D6]
 gi|256998583|gb|EEU85103.1| helicase [Enterococcus faecalis CH188]
 gi|257157815|gb|EEU87775.1| helicase [Enterococcus faecalis ARO1/DG]
 gi|257164557|gb|EEU94517.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
 gi|294453360|gb|EFG21768.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
 gi|300850220|gb|EFK77970.1| DEAD-box ATP-dependent RNA helicase CshB [Enterococcus faecalis
           TUSoD Ef11]
 gi|323480612|gb|ADX80051.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
          Length = 449

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 4   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 63  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 117 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 177 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 357 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 401 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 446


>gi|163840630|ref|YP_001625035.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162954106|gb|ABY23621.1| ATP-dependent RNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 631

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 211/466 (45%), Gaps = 26/466 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F ++  P+ +   L  +G      +Q   L   L  +DVL   +TGSGKT+AFGL L
Sbjct: 73  MQTFSSLGVPKALVSVLDAQGIDAPFPIQAKTLPDSLGGRDVLGRGRTGSGKTLAFGLPL 132

Query: 59  ASTLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L      +    + PL L +APTRELA Q+   +E L    G+   V  GGVS  R+
Sbjct: 133 VARLAEREAAYMRKPNRPLGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGVSQQRQ 192

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R L+ G  IV+  PGRL D +R K +++  ++  VLDEAD M DLGF   ++ +LD++P
Sbjct: 193 ERALKAGVDIVIACPGRLEDLMRQKLVSLESVEITVLDEADHMADLGFLPVVKRLLDTTP 252

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  + + Y    V  ++       S +++  + VA  +    ++ 
Sbjct: 253 TQGQRLLFSATLDNGVDKIVQRYLSQPVTHSVDEPKAAVSTMEHHVLAVADQNVKKQLIV 312

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  + F  T+    +  K L +     V L G LSQ  R   L     G  RV
Sbjct: 313 ELAAGTGRRVL-FMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSSGDVRV 371

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 372 LVATDVAARGVHVDDVELVIHVDPPTAHKAYLHRSGRTARAGSDGTVVTISLPEQQSDVK 431

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           +L R A V V +E                   PL          K+V  +  K DP   A
Sbjct: 432 KLMRAAGVDVAFEKV-------------TANSPLVA--------KLVGDVADKIDPRTRA 470

Query: 418 AGF-LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           A    ++ + G             + R       R  +  G     
Sbjct: 471 ALLAAKVPQQGGGRSTGANAERERAQRASSDGPQRGGRSQGRRSGE 516


>gi|82915130|ref|XP_728973.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485712|gb|EAA20538.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
          Length = 517

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  NI + + +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +
Sbjct: 107 ITSFEQLNICEEVLQSIKELGWEKPTLIQQKVLPIVFQKRDIIGLSETGSGKTACFIIPI 166

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   F       AL I+PTREL +Q+ +  + L +   + +    GGV +  + 
Sbjct: 167 LQELKIKKQSF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQS 220

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L    +I++GTPGR+ DH+      N+ +LK ++ DEAD++L L F   I  +L   P
Sbjct: 221 LNLAKKPNIIIGTPGRILDHLNNTKGFNLKNLKYLIFDEADKLLSLDFESSINKLLLILP 280

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R   +FSAT++ +++ L K   K+ +++ ++++      +    + + L  +   + +
Sbjct: 281 KNRITFLFSATMTKSVSKLKKASLKNPIQIQVSNKYSTVKTLIETYIFLPLKYKYTYLCS 340

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y   KN I+F +T A+  +          + + L G+L+Q +R ++L + +  +  +
Sbjct: 341 LCFYFTNKNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNI 400

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+T V ARG+DL ++++VI+ +L  + +  +HR GRT RAG+ G S+  + Q       
Sbjct: 401 LISTQVGARGLDLKNIKIVINFDL-CSCKEYIHRVGRTARAGKTGKSITFVTQYDVETFL 459

Query: 358 RLFREANVSV 367
            + ++ N  +
Sbjct: 460 TIEKQLNKKI 469


>gi|296083374|emb|CBI23263.3| unnamed protein product [Vitis vinifera]
          Length = 628

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 190/395 (48%), Gaps = 13/395 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA- 57
            K F    +P  + E    R +   + +Q       L  +D +  A TGSGKT+AFG+  
Sbjct: 209 FKSFAESKLPDDVLECC--RNFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPA 266

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L     + S    PL L ++PTRELA Q+   L       GV      GG S   +
Sbjct: 267 MMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQ 326

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G  IV+GTPGRL D I      ++ +  VVLDEAD MLD+GF  ++  IL  + 
Sbjct: 327 ISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTC 386

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-- 235
             R+M+MFSAT    +  LA+ +        +       ++ D   ++  L DR      
Sbjct: 387 PARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERL 446

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +           +VF   +   +R   +L    + VV++ G+ +QQ R+ AL + + 
Sbjct: 447 LTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKK 506

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   + IATDVAARG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  
Sbjct: 507 GSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQEN 566

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           +  A  L    +EA   V  +       +++++++
Sbjct: 567 KGLAGELVNVLKEAGQIVPADLLKFGTHVKKKESK 601


>gi|312959108|ref|ZP_07773627.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
 gi|311286878|gb|EFQ65440.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens WH6]
          Length = 486

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 184/372 (49%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL   
Sbjct: 104 LAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTP 163

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 164 PPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARH 223

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 224 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQT 283

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I + N    +++     VA +D+   + N++  +
Sbjct: 284 LLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLINDN 343

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 344 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 403

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 404 VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETL 463

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 464 LGRKISCETPPT 475


>gi|51244750|ref|YP_064634.1| ATP-dependent RNA helicase (RhlE) [Desulfotalea psychrophila LSv54]
 gi|50875787|emb|CAG35627.1| related to ATP-dependent RNA helicase (RhlE) [Desulfotalea
           psychrophila LSv54]
          Length = 498

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 186/378 (49%), Gaps = 5/378 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  IP  +   +++  +   T +QE  L   L  KD++  A TG+GKT  F + + 
Sbjct: 94  KRFHDFAIPLPLMHGIADLKFEYCTPIQEQSLEAVLAGKDLIGKANTGTGKTAVFLVGVM 153

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRER 118
           + LLA+         P AL +APTREL +Q+ ++ + L   TGV   AV  G     +  
Sbjct: 154 ARLLADKKGGLGKRTPRALILAPTRELVMQIVKDAKKLGRYTGVNADAVYGGAEYEKQME 213

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              +    IVV TPGRL D    + +N  + + +V+DEAD MLD+GF  D+  I+   PK
Sbjct: 214 LLKRGKTDIVVATPGRLIDFHNKRLVNFDNCQTLVIDEADRMLDMGFIPDVRRIVSWMPK 273

Query: 179 KRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           KR     MFSATIS  +  L+  +  D   V   ++      ++ +  LV   ++ N + 
Sbjct: 274 KRDRQTLMFSATISSDVNNLSAQWCVDPEVVEAEADQVTTDTVEQKVYLVTAEEKYNVLY 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+++ +  +  ++F + ++   +    L  +    + LSG++ Q +R + L+  R G+ +
Sbjct: 334 NLIKENSDERIMIFANMKSETRKLADRLKRNSIDCLLLSGDVPQNKRQSRLESFRTGKVK 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA RGI +  +  V++  L   PE+ +HR GRTGRAG  G SV    +      
Sbjct: 394 VLVATDVAGRGIHIDGISYVVNYTLPYEPEDYVHRIGRTGRAGLAGKSVSFACEEGSFYL 453

Query: 357 ERLFREANVSVVWEPAPS 374
             +       +     P 
Sbjct: 454 PDIEEYIGAKLDCVLPPE 471


>gi|313836106|gb|EFS73820.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
 gi|314929641|gb|EFS93472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
 gi|314970583|gb|EFT14681.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
          Length = 476

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G      +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAAP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDKR---PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKKGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P+  + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L K Y  D V   + S+    S + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L        AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V +I  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|312375100|gb|EFR22532.1| hypothetical protein AND_15065 [Anopheles darlingi]
          Length = 821

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 195/399 (48%), Gaps = 28/399 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---ST 61
              P+ I E + + GY + T +Q   +   L+ +D++  A+TGSGKT+AF + L     +
Sbjct: 398 SGFPKEILEIIDKVGYKDPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLTWIQS 457

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     + +    P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L
Sbjct: 458 LPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGTPLGIRTVVVVGGLSREEQGFRL 517

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P    
Sbjct: 518 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNL 577

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 578 KPDTEEAEDASKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSIGKPT 637

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 638 ERTEQIIHIMGENDKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHG 697

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 698 GKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 757

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           RAG+ G ++    ++       L +    S V    P +
Sbjct: 758 RAGKTGCAISFCTKDDSHLFYDLKQMLMSSPVSVCPPEL 796


>gi|194376400|dbj|BAG62959.1| unnamed protein product [Homo sapiens]
          Length = 711

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VAWFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|148245005|ref|YP_001219699.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326832|dbj|BAF61975.1| ATP-dependent RNA helicase DbpA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 462

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 122/401 (30%), Positives = 213/401 (53%), Gaps = 13/401 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L+  GY  +T +Q+  L   L  KDV+   +TGSGKTVAFGL L   L  + 
Sbjct: 11  LHPNLLKNLTILGYDLMTPIQKLSLPVILSGKDVIGQGKTGSGKTVAFGLGLLQKLDVK- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                     ++ + PTRELA QV  E++ L      + V V  GG+S   +   L++G 
Sbjct: 70  -----LFKLQSIVLCPTRELANQVAVEIQKLARVINNIKVVVLCGGMSFGLQIDSLRHGV 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ +H+R   L +S++  +VLDEAD MLD+GF++ ++ I+++ P  R+ L+F
Sbjct: 125 HVVVGTPGRIEEHLRKGTLKLSYINTLVLDEADRMLDMGFQESVDNIIETMPTNRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    IT + +   +  + V +   N + +   Y   +   ++R  A+  +L  +  +
Sbjct: 185 SATCLDTITNITQRVMRSPIMVKVPLINERSTIKQYFYKINTDNERMMALRLLLAKYKPE 244

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +++VFC+T+    +    L  + F  +A+ G+L Q+ER  AL    +    + +ATDVAA
Sbjct: 245 SSLVFCNTKRDAQKVANELVYYGFYALAIHGDLDQRERDQALIRFSNKSVSILVATDVAA 304

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L++VI+ +++ + +  +HR GRTGRAG  G++  +       + + L      
Sbjct: 305 RGLDIDSLDMVINFDIAHDDQVHIHRIGRTGRAGHFGIACTLYSNRETYKLDTLKLGTGD 364

Query: 366 SVVWEPAPSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVD 405
            ++ +  PS     +      ++ P +    I G +K  + 
Sbjct: 365 DIILDSLPS-----KHYLNNPIKKPSMITLKIDGGKKHKLR 400



 Score = 48.8 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSG-INRQSIGAIRVQPDLTFVEVSAD 516
            +           +  G K K     ++  L      I    IG I V    ++V V+++
Sbjct: 378 NNPIKKPSMITLKIDGGKKHKLRPGDIVGGLTGKKKEITFNQIGKINVLSQWSYVAVNSN 437

Query: 517 GVDLLRRTVKLDK 529
            V    + ++ DK
Sbjct: 438 FVKTALKKIRYDK 450


>gi|328769192|gb|EGF79236.1| hypothetical protein BATDEDRAFT_35392 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 647

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 188/393 (47%), Gaps = 25/393 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE+  +  +    +   GY N T VQ   +      +D++  AQTGSGKT AF L +
Sbjct: 175 IHSFEDSTMDPLAKSNVKLAGYSNATPVQRYSVAIVTAGRDLMACAQTGSGKTAAFLLPI 234

Query: 59  ASTLLAENDRFS-------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            S   ++    S           P++L +APTRELA+Q+  E +    ++ V   V  GG
Sbjct: 235 LSQNFSDGATVSDTPTDRRSKILPISLILAPTRELAIQIYEESKKFAYRSWVRPCVAYGG 294

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
             +  + RDL+ G  ++V TPGRL D +    ++++ ++ +VLDEAD MLD+GF   I  
Sbjct: 295 TPISDQLRDLERGCQLLVATPGRLVDLMERGRVSLASIRYLVLDEADRMLDMGFEPQIRQ 354

Query: 172 ILDSSPKKRRML--MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           I+  +         MFSAT    I  LA+++  D V + +        +I     +V   
Sbjct: 355 IVQQADMPTDRQTLMFSATFPRNIQMLARDFLHDYVFIAVGRVGSTSENITQNIEMVEDV 414

Query: 230 DRDNAIV----------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           D+ + ++                 A   +VF  T+         L +  F   A+ G+ +
Sbjct: 415 DKRSVLLDILATDAGIAQESPDPAANLTLVFVETKRGADMLCNFLIDQRFPATAIHGDRT 474

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ER  ALQ  R GR  V +AT VAARG+D+P++  V++ +L S+ ++ +HR GRTGRAG
Sbjct: 475 QREREFALQSFRSGRTPVLVATAVAARGLDIPNVTHVVNFDLPSDIDDYVHRIGRTGRAG 534

Query: 340 RKGMSVFVIPQNMQR----RAERLFREANVSVV 368
             G +         R        + +EAN  + 
Sbjct: 535 NIGKATAFFNMEQNRGIVKELVEILQEANQEIP 567


>gi|229545940|ref|ZP_04434665.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|307291362|ref|ZP_07571246.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|229308903|gb|EEN74890.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
 gi|306497593|gb|EFM67126.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
 gi|315030003|gb|EFT41935.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
          Length = 452

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 7   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIQKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 66  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 120 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 180 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 360 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 403

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 404 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 449


>gi|17545341|ref|NP_518743.1| ATP-dependent RNA helicase DbpA [Ralstonia solanacearum GMI1000]
 gi|17427633|emb|CAD14152.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
           GMI1000]
          Length = 465

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L++ GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 15  LAPAVLANLAQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELA QV +E+  L   +  V V    GG  +  +   L++GA
Sbjct: 72  ---TRRFDVQAMVLCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQAASLEHGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+F
Sbjct: 129 HVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++       +     E    S I  R   V   +R +A+  +L+++   
Sbjct: 189 SATYPDGIAKLSRQI-LRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPV 247

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 248 STLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAA 307

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +    
Sbjct: 308 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGGIEQALGR 367

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     ++A     +   L  P+    I G  K  + 
Sbjct: 368 EVEWHRLAELDA----SSDAPLLPPMETLQILGGRKDKIR 403



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G     IG I      T+V     ++ D + 
Sbjct: 387 PPMETLQILGGRKDKIRPGDVLGALTGDAGFRGDQIGKINATEFSTYVAVERGIARDALR 446

Query: 520 LLRRTVKLDKGIQLKYLG 537
            L       K ++++ + 
Sbjct: 447 KLNAGKVKGKKVRVRLMD 464


>gi|195332686|ref|XP_002033028.1| GM21090 [Drosophila sechellia]
 gi|194124998|gb|EDW47041.1| GM21090 [Drosophila sechellia]
          Length = 522

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 142/490 (28%), Positives = 222/490 (45%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDESLAIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT+   +   +      D    +  S+      +D R +L A  DRD  ++  LR +  
Sbjct: 188 SATMKDFMKESSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKYRE 247

Query: 245 KN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            N     ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 GNENANVMIFTNTKKYCQLLSMTLKNMDIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++  A  
Sbjct: 308 TDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA-A 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNDFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L   R +  D +R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLKEIRRKRKLQQAESAASEQGKALLQDERFKSVDSARFEKKGK 484

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 485 GRSRVTQEDT 494


>gi|327264401|ref|XP_003217002.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like [Anolis
           carolinensis]
          Length = 820

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 184/399 (46%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P   +
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVTNQ 575

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-------------------------- 215
                    P          K   R  +                                
Sbjct: 576 KPDTDEAEDPDKMMANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F +   +++  P  S
Sbjct: 756 GRAGKSGVAISFVTKEDS----AVFYDLKQAILESPVSS 790


>gi|145294934|ref|YP_001137755.1| hypothetical protein cgR_0880 [Corynebacterium glutamicum R]
 gi|140844854|dbj|BAF53853.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 424

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 178/364 (48%), Gaps = 2/364 (0%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL   G     ++QE  L   L   D +  A+TG GKT  FG+ L   +    D  
Sbjct: 18  EITDALEALGINRTFAIQEYTLPIALDGHDFIGQARTGMGKTYGFGVPLLDRVFDSADVA 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL I PTRELAVQVG +L+       + +    GG     +   L+ G  +VV
Sbjct: 78  ETDGTPRALVIVPTRELAVQVGDDLQRAATNLPLKIFTFYGGTPYEEQIDALKVGVDVVV 137

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           GTPGRL D  +   L++  +  +VLDEADEMLDLGF  DIE IL +   + + ++FSAT+
Sbjct: 138 GTPGRLLDLHKRGALSLDKVAILVLDEADEMLDLGFLPDIEKILRALTHQHQTMLFSATM 197

Query: 190 SPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
             AI T   +   +   +R   +  +  H             D++     IL+       
Sbjct: 198 PGAILTLARSFLNKPVHIRAETSDASATHKTTKQVVFQAHKMDKEAITAKILQAKDRGKT 257

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T+ + ++  + LA   F V ++ G++ Q  R  +L   R G+  + +ATDVAARG
Sbjct: 258 IIFARTKRTAAQVAEDLASRGFSVGSVHGDMGQPAREKSLNAFRTGKIDILVATDVAARG 317

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+ D+  VI+ +   +P   +HR GRTGRAG  G +V ++  +   +   +  E  +  
Sbjct: 318 IDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGHNGTAVTLVGYDETLKWTVIDNELELGQ 377

Query: 368 VWEP 371
              P
Sbjct: 378 PNPP 381


>gi|85001021|ref|XP_955229.1| RNA helicase [Theileria annulata strain Ankara]
 gi|65303375|emb|CAI75753.1| RNA helicase, putative [Theileria annulata]
          Length = 976

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/369 (28%), Positives = 170/369 (46%), Gaps = 5/369 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I + L +R Y     +Q   +   +  +DV+  A+TGSGKT+AF L      L + 
Sbjct: 375 LPDPILKILEKREYERPFPIQMQCIPALMCGRDVIGIAETGSGKTLAFLLPAIRHAL-DQ 433

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                    + L IAPTREL +Q+  E        G+      GG  +  +   L+ GA 
Sbjct: 434 PSLRENDGMIVLVIAPTRELVIQISNESSKFSRAVGLKTLAIYGGAGIGEQLNALKRGAE 493

Query: 127 IVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           IV+GTP     +    +GK  N+  +  +VLDEAD M D+GF   I  I+ +    R+  
Sbjct: 494 IVIGTPGRLIDVLTLSKGKVTNLRRVTFLVLDEADRMFDMGFAPQISAIVGNIRPDRQTA 553

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT    I  LAK      +++ +    +  S +D   +++    +   ++ +L    
Sbjct: 554 LFSATFPIMIENLAKKILAKPLQIVVGQRGKSASQVDQHVLVLNEEKKLLKLLKLLGEWH 613

Query: 244 AK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              N I+F +T+         L  + +    L G + Q +R   L   R+G+  + IAT 
Sbjct: 614 EHGNIIIFVNTQLESEHLFNDLLAYGYDAGILHGGVDQTDREFTLNDFREGKKTILIATS 673

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  + LVI+     + E+ +HR GRTGRAG  G S   +      ++  + + 
Sbjct: 674 IAARGIDVKSVVLVINYAAPDHFEDYVHRVGRTGRAGTIGTSYTFLTPEEASKSHDIIKA 733

Query: 363 ANVSVVWEP 371
             ++    P
Sbjct: 734 LKLASQEVP 742


>gi|327325572|gb|EGE67371.1| ATP-dependent RNA helicase [Propionibacterium acnes HL103PA1]
          Length = 491

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|314964947|gb|EFT09046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
 gi|315093752|gb|EFT65728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
          Length = 491

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLTAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|195115088|ref|XP_002002099.1| GI14145 [Drosophila mojavensis]
 gi|193912674|gb|EDW11541.1| GI14145 [Drosophila mojavensis]
          Length = 837

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 190/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 414 SGFPPEIIEIIDSVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 473

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 474 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRL 533

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 534 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 593

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  +  
Sbjct: 594 KPDTEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 653

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 654 ERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 713

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 714 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 773

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G+++  + ++       L
Sbjct: 774 RAGKTGVAISFVTKDDSSLFYDL 796


>gi|325913813|ref|ZP_08176172.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539888|gb|EGD11525.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 570

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 187/371 (50%), Gaps = 4/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ + LL  
Sbjct: 15  DLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  + ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARTLERNGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPA 372
                +  EP 
Sbjct: 375 YIEQKIPVEPV 385


>gi|195579916|ref|XP_002079802.1| GD24145 [Drosophila simulans]
 gi|194191811|gb|EDX05387.1| GD24145 [Drosophila simulans]
          Length = 641

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 218 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 277

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 278 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 337

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 338 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 397

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 398 KPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 457

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 458 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 578 RAGKTGCAISFVTKDDSALFYDL 600


>gi|189426069|ref|YP_001953246.1| ATP-dependent RNA helicase DbpA [Geobacter lovleyi SZ]
 gi|189422328|gb|ACD96726.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
          Length = 465

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 136/377 (36%), Positives = 211/377 (55%), Gaps = 8/377 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + + L+  GY  +T +Q   L P L  KD++  A+TGSGKT AFG+ L S L   
Sbjct: 10  HLKPAMLKNLASLGYAAMTPIQAHSLPPILASKDLIARAKTGSGKTAAFGIGLLSRLD-- 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
               + A    AL + PTRELA QV +EL  L   T  + V    GGV    +   L++G
Sbjct: 68  ----TTALQLQALVLCPTRELADQVAKELRRLARFTENIRVLTVCGGVPFGPQLGSLEHG 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH+VVGTPGRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P +R+ L+
Sbjct: 124 AHVVVGTPGRLLDHLRRGSLDLSSLQTLVLDEADRMLDMGFQDDIRSLIAAAPARRQTLL 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT   +I  ++   Q+  V V++  ++   +   +   +     R  A+  IL  +  
Sbjct: 184 FSATYPDSIADMSAAMQQTPVEVSVDEDHVAGTIEQHFYAVE-PDQRSEAVARILGRYRP 242

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ +VFC+T+         L E  F  +A+ G+L Q+ER   L    +  A V +ATDVA
Sbjct: 243 ESTLVFCNTKLDCQELADDLKERGFAALAIHGDLEQRERDQVLVRFSNKSASVLVATDVA 302

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+ +L  VI+ ELS NPE   HR GRTGRAG +G+++ ++ +   R  + +  +  
Sbjct: 303 ARGLDIKELAAVINFELSRNPEVHTHRIGRTGRAGEQGLAISLVSRRDSRLIKGMEEDLA 362

Query: 365 VSVVWEPAPSVEAIRER 381
             +  +   S+  +  R
Sbjct: 363 CRIDLQEFSSLAPLTGR 379



 Score = 64.2 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
            R          +  G K K     ++  L    GI    +G I +    ++V +    V
Sbjct: 378 GRPPAAAMVTLCIDGGRKNKLRPGDILGALTGEGGIAGSEVGRIDLFDFHSYVAIMGQSV 437

Query: 519 DLLRRTVKLDKGI----QLKYLGGEK 540
           +   R +  ++      +++ +G  +
Sbjct: 438 EQALRCLANNRIKGRFFKVRRIGSGR 463


>gi|16768302|gb|AAL28370.1| GM01081p [Drosophila melanogaster]
          Length = 641

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 218 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 277

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 278 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 337

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 338 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 397

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 398 KPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 457

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 458 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 517

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 518 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 577

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 578 RAGKTGCAISFVTKDDSALFYDL 600


>gi|332523902|ref|ZP_08400154.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332315166|gb|EGJ28151.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 447

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 110/460 (23%), Positives = 195/460 (42%), Gaps = 25/460 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I +AL E  +   T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKHYIQKALEEINFKEPTEVQKKLIPIVNSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           +           L  AP+RELA Q+    + +   +   + +         + +  +   
Sbjct: 67  SRDV------QVLITAPSRELATQIFEAAKQIANHSQKEIRLVNYVGGTDKLRQIEKLKG 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIVVGTPGR+ D ++   L I      V+DEAD  +D+GF D ++ I  S  K+ ++
Sbjct: 121 SQPHIVVGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLDTVDKIASSLSKEVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y ++ +   I +E     +ID   V     D++  I+ IL+  
Sbjct: 181 LVFSATIPQKLQPFLKKYLRNPLIEQIKTETVIADNIDNWLVSTKGRDKNGHILEILKNI 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 241 QPYLAMIFVNTKERADDLHSFLVANGLKVAKIHGGVPPRERKRIMNQVKKLDFEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +S +                ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 MGISFIP---------------KMLKNGEFRDTYDRDRRYNREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
             +      ++I  V     R   R + +A          
Sbjct: 405 KKKVKPGYKKKIQWVVDEKRRKERRAEGKARGRAERKAKK 444


>gi|195170555|ref|XP_002026077.1| GL16096 [Drosophila persimilis]
 gi|194110957|gb|EDW33000.1| GL16096 [Drosophila persimilis]
          Length = 554

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 110/398 (27%), Positives = 178/398 (44%), Gaps = 29/398 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE    P    + +  + Y   T +Q       L   +++  A+TGSGKT+AF L  
Sbjct: 102 IQFFEEVCFPDYCMDEIRRQRYSEPTPIQAQAWPIALSGHNLVGIAKTGSGKTLAFILPA 161

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+AL +APTRELA Q+        +   V      GG    ++ 
Sbjct: 162 ILHINGQQP-LQRGEGPIALVLAPTRELAQQIQSVANDFGSSAFVRNTCVFGGAPRSKQA 220

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            DL+ G  I++ TPGRL D ++    N+     +VLDEAD MLD+GF   I  +L     
Sbjct: 221 SDLKRGVEIIIATPGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRP 280

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI------------------ASENRQHSDID 220
            R++LM+SAT    +  LA+++    ++V+                       R + +I 
Sbjct: 281 DRQILMWSATWPKEVRQLAEDFLGSYIQVSRVQILRIQIETLSARSTSGPWSCRPNHNIR 340

Query: 221 YRAVLVALSDRDNA-----IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
               +    ++             + H     I+F +T+       + +      V ++ 
Sbjct: 341 QYVEVCGEHEKSAKLKDLLSHIYDQAHAPGKIIIFVATKKKTDELARFINAFGVSVGSIH 400

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ +R + L   R GRA + +ATDVAARG+D+  ++ VI+ +   + E+ +HR GRT
Sbjct: 401 GDKSQMDRDSVLNDFRSGRANILVATDVAARGLDVDGIKYVINFDYPQSSEDYIHRIGRT 460

Query: 336 GRAGRKGMSVFVIPQNMQRRAE---RLFREANVSVVWE 370
           GR   KG S     +   R A     + REAN +V  E
Sbjct: 461 GRKLSKGTSYAFFTRKNARCARALIDILREANQNVNPE 498


>gi|119587817|gb|EAW67413.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, isoform CRA_b [Homo
           sapiens]
          Length = 478

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 177/374 (47%), Gaps = 17/374 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+       E  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEK-----EESIPIALSGRDILARAKNGTGKSGAYLIPLLER 152

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 153 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 206

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 207 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 266

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++     ++ +    +N+  E             V    + + +  +  
Sbjct: 267 QILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGV-TQYYAYVTERQKVHCLNTLFS 325

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 326 RLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 385

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 386 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 445

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 446 EQLGTEI--KPIPS 457


>gi|242812468|ref|XP_002485963.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714302|gb|EED13725.1| DEAD/DEAH box RNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 582

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 99/421 (23%), Positives = 188/421 (44%), Gaps = 33/421 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  ++ + ++  GY   T +Q   +   L+  D++  AQTGSGKT A+ + + S L+ + 
Sbjct: 121 LHPIMEKNVALCGYQIPTPIQAYAIPTILQGHDLMAIAQTGSGKTAAYLIPVLSKLMGKA 180

Query: 67  DRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +                    PL L I PTRELA Q+  E   L  ++ +   V  G
Sbjct: 181 KKLAGPRPKFGEAFDPKVNAVRAEPLVLVIVPTRELACQIFDEARRLCYRSMLRPCVAYG 240

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDI 169
           G  V  +R +LQ G  I++GTPGRL D +    + ++  ++  ++DEADE+L+  +  + 
Sbjct: 241 GGPVSHQRMELQKGCDILIGTPGRLIDFMGQTHVLSLRRVRYTIVDEADELLNTDWETEF 300

Query: 170 EF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                    +     R M+  +           K+ +   VR+ +      H++I+ R +
Sbjct: 301 AQLLSGGDSNEDADHRYMMFSATFNKTCRQVAKKHLETGYVRIRVGRTGSSHANIEQRII 360

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +   + ++L        ++F +T+    R    L        ++  + +Q+ER 
Sbjct: 361 YAEDQTKMQCLYDLLLSMPPARTLIFVNTKVQADRLDDYLFNLGLPSTSIHSDRTQRERE 420

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGR 340
           +A+   R G++ + IAT V+ARG+D+ ++  V++ +L S      +  +HR GRT R G 
Sbjct: 421 DAMSAFRTGKSPILIATGVSARGLDIKNVMHVVNFDLPSYDQGGIDEYVHRIGRTARIGN 480

Query: 341 KGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAIRERDAQRILQDPLFL 393
           +G++  +       ++ R   +L  E    V     E  P  E + + D   + +D    
Sbjct: 481 EGIATSLYNHGRNTDIARDLVKLLLENKQVVPDFLEELKPEGELVFDDDNSDVEEDIDET 540

Query: 394 D 394
           +
Sbjct: 541 N 541


>gi|105969677|gb|ABF81676.1| eIF4A [Plasmodium falciparum]
          Length = 696

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 185/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR------ 68
           + +  Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L  +        
Sbjct: 132 IKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYE 191

Query: 69  ---------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                    F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 192 QNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLS 251

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--------- 170
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I          
Sbjct: 252 NLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMP 311

Query: 171 ---------------FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                              +   KR+ +MFSAT    I  LAK Y      + +      
Sbjct: 312 GNDNDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGST 371

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V V   ++ N ++N+L  +     I+F  T+       + L+      V + 
Sbjct: 372 NEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIH 431

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 432 GDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 491

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   + ++ +   + L     E N  +  
Sbjct: 492 GRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIPR 528


>gi|50307015|ref|XP_453485.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74606431|sp|Q6CRF4|DBP4_KLULA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49642619|emb|CAH00581.1| KLLA0D09504p [Kluyveromyces lactis]
          Length = 770

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 173/375 (46%), Gaps = 12/375 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+++P  +   + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  NLFQDLPISEQTLKGLKEAAFIKLTEIQRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  +   T     + IGG  V  E+ 
Sbjct: 101 EKLYRE--KWTDMDGLGALIISPTRELAMQIYEVLSKIGKHTTFSAGLVIGGKDVTFEKE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  G N S+L+ +VLDEAD  LD+GF+  ++ I+++ P  
Sbjct: 159 RISRINILIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPAS 218

Query: 180 RRMLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           R+ L+FSAT S ++                   +N  S +     +    + V L D+ +
Sbjct: 219 RQTLLFSATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEVPLPDKLD 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMR 291
            + + ++ H     IVF S+   V    +   +    +  +     Q++ +         
Sbjct: 279 ILFSFIKSHLKSKLIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             +     +TDV ARGID P ++ VI  +   + +  +HR GR  R G++G S+ ++   
Sbjct: 339 RAQHVCLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHRVGRAARFGKEGKSLIMLTPE 398

Query: 352 MQRRAERLFREANVS 366
            +    +  +  N+ 
Sbjct: 399 EEEGFLKRLKTKNIE 413


>gi|311897562|dbj|BAJ29970.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 765

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 154/610 (25%), Positives = 249/610 (40%), Gaps = 90/610 (14%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL++RG      +Q A +   L  KDVL   +TGSGKT++FGL L + L   +
Sbjct: 71  LHDDVVRALAKRGVTTPFPIQAATIPDALAGKDVLGRGRTGSGKTLSFGLPLLTRL--AD 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  P  L + PTRELA+QV   LE   +  G+ + V  GG S+  +   L+ G  
Sbjct: 129 GERTKAKHPRGLILVPTRELAMQVADALEPFGSVLGLRLKVVCGGTSMSNQIYALERGVD 188

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P   + L+FS
Sbjct: 189 VLVATPGRLRDLINRGSAKMDEVEIAVLDEADQMADMGFLPEVTEILDLVPAGGQRLLFS 248

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y K+ V   +       + + +  ++V    +D A +          
Sbjct: 249 ATLENEIDTLVKRYLKNPVTHEVDPSAGAVTTMTHHILVV--KPKDKAPITSAIAARKGR 306

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 307 TIIFVRTQMGADRVAQQLVESGVKADALHGGMTQGARTRVLGDFKDGYLNVVVATDVAAR 366

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN-- 364
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V ++  + +R   RL  +A   
Sbjct: 367 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVTLVLPHQRRGVFRLMEDAGVD 426

Query: 365 -----------------------VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
                                  V V  E A  +    ER+   ++++         + +
Sbjct: 427 ASRHILDHAFDAEVARITGARSLVEVQAESASGIAGAAEREVAELIRELERAQRRANELR 486

Query: 402 KMV------------------DVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
           +                    +   A+ D E   A         +      +     S R
Sbjct: 487 EEADRLAARAARERAELGIEDEEPAAEADTEAPVAAVAAAEAEPVAEDRAPSYREARSER 546

Query: 444 DRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIR 503
             + +  R  +  GG     +G   F    G +++              G NR   G   
Sbjct: 547 PAYNNRDRGDRERGGFNREERGGRSF----GDRER-------------GGFNRDDRG--- 586

Query: 504 VQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKR 563
                              R+   D     +  GG   + RG +S G + +   +   + 
Sbjct: 587 ------------------GRSFGGD-----RERGGFNREERGGRSFGDRERGGFNRDDRG 623

Query: 564 FKRFKGASKN 573
            + F G  + 
Sbjct: 624 GRSFGGDRER 633


>gi|291405635|ref|XP_002719293.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Oryctolagus cuniculus]
          Length = 599

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 151/386 (39%), Gaps = 22/386 (5%)

Query: 1   MKIFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF
Sbjct: 160 ITTFQQLDQEYKINSQLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAF 219

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +       
Sbjct: 220 SIPILMHLKQPTNK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAEA 274

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
            ++     +    ++ T      ++  +      L +V     DE              +
Sbjct: 275 AKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQ 334

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
               F+  +S K +R +  +            N          A  +   +       + 
Sbjct: 335 LASIFLACTSHKVKRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVG 394

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + + +  A+  +++       +VF  +          L      V  +  E +QQ+R N 
Sbjct: 395 SETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNT 454

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +   R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V 
Sbjct: 455 VHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVT 514

Query: 347 VIPQNMQ---RRAERLFREANVSVVW 369
              ++ +   R    + ++A   V  
Sbjct: 515 FFTEDDKPLLRSVANVIQQAGCPVPE 540


>gi|209881955|ref|XP_002142415.1| DEAD/DEAH box ATP-dependent RNA helicase [Cryptosporidium muris
           RN66]
 gi|209558021|gb|EEA08066.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Cryptosporidium
           muris RN66]
          Length = 506

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 191/425 (44%), Gaps = 15/425 (3%)

Query: 3   IFENIP-------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
            F N+          +  AL +     +T +Q   +   L  KDVL +A+TGSGKT+AF 
Sbjct: 9   FFSNVSFEQSAICDQLKRALKDMNITTMTEIQAKSIPRILEGKDVLGTAKTGSGKTLAFL 68

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           +   + L   N  F P +    + I+PTREL++Q+      L         + IGG +  
Sbjct: 69  VPAVNLLY--NVEFLPRNGTGVIVISPTRELSLQIYEVCRELCKYLPQTHGLVIGGANRR 126

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            E   L  G +I++ TPGRL DH++        +L ++++DEAD +L++GF +++  I+ 
Sbjct: 127 NEADKLNKGVNILIATPGRLLDHLQNTKGFQYGNLLSLIIDEADRILEIGFEEEMNQIIK 186

Query: 175 SSPKKRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+  +FSAT +  +  L +        ++   ++     S ++   V+ + ++R 
Sbjct: 187 LLPVKRQTSLFSATQTTKVADLVRLSLRNPVLIKCKTSNTAATVSGLEQGYVIASANERF 246

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +   L+ +     +VF S+  S     ++         ++ G+  Q  R         
Sbjct: 247 LLLYTFLKKNRENKVMVFFSSCMSTKFHEELFNYVDLSCSSIHGKKKQSSRMQTYYEFCS 306

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQN 351
               + + TDVAARG+D+P+++ +I  +   +P+  +HR GRT R A   G ++  +   
Sbjct: 307 SEKGLLLCTDVAARGLDIPNVDWIIQYDPPDDPKEYIHRVGRTARGANGTGKALLFLLPE 366

Query: 352 MQRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             +  + L ++ N+ +        + A  +   +R+++    L     D  +      A 
Sbjct: 367 EIQFLQYL-KKMNIPLNEYAFSKNKIANVQNQLERLIEKNYHLHCSARDAYRAYLHSYAS 425

Query: 411 HDPEK 415
           H  + 
Sbjct: 426 HSIKD 430


>gi|284992766|ref|YP_003411320.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284066011|gb|ADB76949.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 508

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 208/462 (45%), Gaps = 12/462 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ +  AL  RG  +  ++Q + L   L  +DVL  A TGSGKT+AFGL + + L  E 
Sbjct: 34  LPQQLVTALERRGIRHPFAIQASALPDALAGRDVLGKAATGSGKTLAFGLPMLARL-GET 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P  AP AL + PTRELA QV   L  L    GV +    GG S++R+ + L+ G  
Sbjct: 93  ARRGP-RAPRALVLVPTRELAQQVFDNLAPLGQSIGVQLTTVYGGASMYRQIQQLRRGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            V+ TPGRL D I    + +  +   V+DEAD M DLGF   ++ +LD +    + L+FS
Sbjct: 152 AVIATPGRLQDLISQGEVTLDEVSVTVIDEADFMSDLGFLPVVQELLDQTRPDAQRLLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL + Y KD  R  +          ++ A  +A  D+    V          
Sbjct: 212 ATLDGEVDTLVRRYLKDPARHEVKRAGDDAPPAEHLAYSLAFRDKVP--VTEQLAARPGR 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+    R    L     +  A+ G L Q  R  AL+   D R+ V +ATDVAAR
Sbjct: 270 TLIFVRTQLGADRLAGNLQAAGIKAEAIHGGLPQGARRRALEEFTDARSPVLVATDVAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H +  ++ +  LHRSGRT RAG  G+ V ++  +   +A+R FR+A + 
Sbjct: 330 GIHVDDVSLVLHYDPPADHKTYLHRSGRTARAGAGGVVVSLLLPDQVGQAKRRFRQAKIE 389

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 P V  +R  DA   + + +         ++ V              G       
Sbjct: 390 ------PEVSRVRPGDAP--IAELIASGVHVEPVERPVRESRRPSGGHGGPGGRRPRRDG 441

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSW 468
                +   P      R R   D  AF        +      
Sbjct: 442 ERPRRDGDRPRRPHGERPRRDGDRPAFGERPYGERSRGNGDR 483


>gi|227496959|ref|ZP_03927211.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833567|gb|EEH65950.1| ATP-dependent RNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 468

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/379 (31%), Positives = 188/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++   P+++ + L  RG+ +   +Q A L   LR +DVL   +TGSGKT+AF L L 
Sbjct: 34  SFASLGVDPELVAD-LDSRGFTSPFPIQTATLPDTLRGRDVLGRGRTGSGKTLAFSLPLV 92

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  ++        PL L +APTRELA+Q+   +  L     + V    GGVS   + +
Sbjct: 93  QRLADDDAP--RPGYPLGLVLAPTRELALQIADTIRPLATALDLTVTTVFGGVSQKPQEK 150

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  IVV  PGRL D +    + +  +   VLDEAD M DLGF  ++  I+ ++P +
Sbjct: 151 ALAAGVDIVVACPGRLLDLMGQGIVRLDDVAITVLDEADHMADLGFLPNVRRIMRATPPR 210

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   +  L   +  D +  ++   +    D+D+R   VA     + +V  L
Sbjct: 211 GQRMLFSATLDNGVDKLVDEFLHDPLHHSVDPASSPVRDMDHRVWTVADKTAKDGLVLHL 270

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  + F  T+    R  + L       V L G +SQ  R  A+     G+A V +
Sbjct: 271 ASGTGQRIL-FTRTKHLARRLARKLVAAGIPAVELQGNMSQNARERAMGAFSAGQAHVMV 329

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+  +ELV+H +  +  +  LHRSGRT RAG  G  V ++    +   + L
Sbjct: 330 ATDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGASGTVVTLVLPEQKHDVQVL 389

Query: 360 FREANVSVVWEPAPSVEAI 378
            ++A +    E     + +
Sbjct: 390 LKKAKIKADIERVRPDDDV 408


>gi|303391238|ref|XP_003073849.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302997|gb|ADM12489.1| DEAD box ATP-dependent RNA helicase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 450

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 185/427 (43%), Gaps = 21/427 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE++   Q I + L E G+V++  +Q+ ++   L   D++ S+QTG+GKT+AF + +
Sbjct: 1   MK-FEDLKIDQRIEKGLRESGFVDMKEIQQKVIPMALEGHDIIGSSQTGTGKTLAFLVPI 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L      +S       + I PTRELA+Q+   L  +   T +   + +GG+    E 
Sbjct: 60  LQKLTDLQ--WSGGDGLGCVIITPTRELALQIFDVLSKVGKYTVLSTGLIMGGLETENES 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L N   +V      L        LN   ++ +VLDEAD+M+++GF++ +E IL   P 
Sbjct: 118 LRLSNMNILVCTPGRFLQHLQENPYLNTGGIQILVLDEADKMIEMGFKETLEDILGYIPS 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT   +   + +      V +                 ++ + D+ N +   
Sbjct: 178 KKQTLLFSATPKASTARILRLEDPKIVSMYKEEGFPSQL--HQYFYMMRMEDKVNYLHTF 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFT--KVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +  +     IVF ST   V          +   ++  LSG +SQ++R +  +     +  
Sbjct: 236 IGSNPGVKGIVFFSTCKEVKFHYLLFEKLKLRNRIFCLSGGMSQKQRIDTFKKFVREKNG 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +   TD+ +RG+D P +++VI  +   N E  +HR GRT R    G S   +    ++  
Sbjct: 296 ILFCTDLGSRGLDFPKVDVVIQYDCPCNIETYVHRVGRTARNNEGGESYVYLVYGEEKLL 355

Query: 357 ERLFREANVSVVWEPAPSVEA------------IRERDAQRILQDPLFLDSIQGDEKKMV 404
             + ++  +      +   E             IR +   R+++  +  +    +  +  
Sbjct: 356 GDIQKKGWIKKQETESKDEEDRGSSEEIVEGPNIRIKSIDRMIKGLIKSNKELNEYCRKY 415

Query: 405 DVLLAKH 411
                K 
Sbjct: 416 LTTYEKF 422


>gi|160876048|ref|YP_001555364.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           baltica OS195]
 gi|160861570|gb|ABX50104.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
 gi|315268244|gb|ADT95097.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
          Length = 427

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/381 (31%), Positives = 191/381 (50%), Gaps = 4/381 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   L+E  YV+ TSVQ A +   L  +DVL  A TGSGKT AF + L   L+      
Sbjct: 19  PLLNRLTELAYVSPTSVQAATIPAVLAGRDVLAGANTGSGKTAAFAVPLLQQLVEAKTDD 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHI 127
              +    L + PTRELA QV        +       +    GGVSV+ + + L+ GA +
Sbjct: 79  KTGAYVRCLVLVPTRELAQQVADSFLSYASHLNGKLKIVAAFGGVSVNAQMQSLRAGADV 138

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL D +    + ++ + A+VLDEAD ML LGF +++  +LD+ P K++ L+FSA
Sbjct: 139 LVATPGRLLDLLSSNAIKLNRVSALVLDEADRMLSLGFTEELAQVLDALPAKKQTLLFSA 198

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  L      D +     SE         R + V    +   + ++++ H    A
Sbjct: 199 TFPEEVRELTAKLLNDPLEYQFQSEQESTI--HQRVITVNRPMKTALLAHLIKEHQWSQA 256

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F S + + +   + L++         G+ +Q  R+  L   ++G   V IATD+AARG
Sbjct: 257 LIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARG 316

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L +VI+ +L  +P + +HR GR+GRAG  G++V +I          + ++  + +
Sbjct: 317 IDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEDYHHFGVIEKKNKLKL 376

Query: 368 VWEPAPSVEAIRERDAQRILQ 388
           V E     EA  E  A+ + Q
Sbjct: 377 VREQIVGFEADDEMPAELLEQ 397


>gi|29375944|ref|NP_815098.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis V583]
 gi|257419189|ref|ZP_05596183.1| helicase [Enterococcus faecalis T11]
 gi|29343406|gb|AAO81168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis V583]
 gi|257161017|gb|EEU90977.1| helicase [Enterococcus faecalis T11]
          Length = 449

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 4   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 63  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 117 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 177 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNKIIYQ 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 237 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 297 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 357 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 401 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 446


>gi|320589197|gb|EFX01659.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 734

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/415 (28%), Positives = 184/415 (44%), Gaps = 32/415 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 310 LPPRLLDVVEAVGYTEPTPIQRAAIPIALQGRDLIGVAVTGSGKTAAFLLPLLVYIKELP 369

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  S    P AL +APTRELA Q+  E        G  V   +GG S+  +   L+NG
Sbjct: 370 PLDEISKNDGPYALILAPTRELAQQIESEARKFATPFGYTVVSIVGGHSLEEQAYALRNG 429

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D I  + L +S    V++DEAD M+DLGF D +  ILD+ P       
Sbjct: 430 AEIVVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEDPLNKILDAMPTANEKPD 489

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL---------------- 228
                     T     +       + +              +                  
Sbjct: 490 TDEAEDARAMTQYLGGKIRYRETMMYTATMPPVVEKIAKRYLRRPAIVTIGNVGEAVETV 549

Query: 229 -----------SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
                        +      +     A   IVF + + +     K + +  F  V L G 
Sbjct: 550 EQRVEFVSGEDRRKKRLQEILQSGQFAAPIIVFVNIKRNCEMVAKDVRQMGFTTVTLHGS 609

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q +R  ALQ +R G+A V +ATD+A RGID+ D+ LVI+  ++++ E   HR GRTGR
Sbjct: 610 KTQDQREAALQALRQGKADVLVATDLAGRGIDVADVSLVINFNMATSVEQYTHRIGRTGR 669

Query: 338 AGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           AG+ G+++  +     ++    +++  ++++S V +     EA +++  +    D
Sbjct: 670 AGKSGVAITFLGGEDSDVLYDLKQMISKSSISKVPDELRRHEAAQQKPTKSAKSD 724


>gi|269861020|ref|XP_002650226.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
 gi|220066356|gb|EED43841.1| DEAD box RNA helicase p68 [Enterocytozoon bieneusi H348]
          Length = 443

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 116/394 (29%), Positives = 191/394 (48%), Gaps = 25/394 (6%)

Query: 1   MKIF-ENIPQVIGE----ALSE---------RGYVNLTSVQEAILNPDLREKDVLVSAQT 46
           MK+F  NIP  +        SE         +G+ + T +Q       L  +D++  A T
Sbjct: 15  MKLFGTNIPAPVLSFRDLNFSEELVNFFEVTKGWEHPTPIQSQGWPMALSGRDMIGIAAT 74

Query: 47  GSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGV 103
           GSGKT +F +  A    A+         P+ + +APTRELA Q+G    EL  L     +
Sbjct: 75  GSGKTFSFLVP-AYIHAADQPSLREGDGPIVIVLAPTRELATQIGNVATELSQLKIFNHL 133

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
                 GG ++  +++ L NG  I++ TPGRL D        ++    +VLDEAD MLD+
Sbjct: 134 KPLCVYGGANIFPQKKALVNGIEILIATPGRLIDLHNQGFCPLNRCTFLVLDEADRMLDM 193

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDY 221
           GF   +  I+      R+ LM+SAT    + +       Q          E + +  I+ 
Sbjct: 194 GFEPQLNQIIPKINSHRQTLMWSATWPKEVKSLAYRYTSQDAIQVTVGDEELKVNEKIEQ 253

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           R  +V+ +D++  ++  L+       ++FC+ +++  +  + L E+ F+ VAL G+ SQ 
Sbjct: 254 RVEIVSNNDKEKKLLYTLQDFRDARVLIFCNKKSTCDKLERFLLENRFRGVALHGDKSQH 313

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-R 340
            R       + GR  + IATDVAARG+D+ D+ LVI+ +L +N E+ +HR GRT R   +
Sbjct: 314 VRDVIFDNFKKGRDPILIATDVAARGLDVKDIHLVINYDLPTNLEDYVHRVGRTARGTAK 373

Query: 341 KGMSVFVIPQNMQ----RRAERLFREANVSVVWE 370
           +G ++            +R   L ++ NV++  E
Sbjct: 374 EGKALTFFSLEEDSGLAKRFIELLKKGNVTIPDE 407


>gi|313812224|gb|EFS49938.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
          Length = 491

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFRRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|302519357|ref|ZP_07271699.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302428252|gb|EFL00068.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 492

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 187/364 (51%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 69  FADLDMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 129 ---TAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATAL 185

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 186 RRGAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQ 245

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+    +     
Sbjct: 246 RMLFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--IATEIA 303

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT
Sbjct: 304 ARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVAT 363

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL  
Sbjct: 364 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLVTPNQRRSMARLMA 423

Query: 362 EANV 365
           E  V
Sbjct: 424 EVGV 427


>gi|318056420|ref|ZP_07975143.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
 gi|318077530|ref|ZP_07984862.1| DEAD-box RNA helicase [Streptomyces sp. SA3_actF]
          Length = 473

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/364 (32%), Positives = 187/364 (51%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 50  FADLDMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 110 ---TAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATAL 166

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 167 RRGAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVCPGGQ 226

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+    +     
Sbjct: 227 RMLFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--IATEIA 284

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT
Sbjct: 285 ARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVAT 344

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL  
Sbjct: 345 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGSVATLVTPNQRRSMARLMA 404

Query: 362 EANV 365
           E  V
Sbjct: 405 EVGV 408


>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
          Length = 787

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/363 (28%), Positives = 177/363 (48%), Gaps = 8/363 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   + Q +  A++ +GY   T +Q   +   +  +DV+  A+TGSGKT AF + L
Sbjct: 1   MGAFQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L   + R        AL ++PTRELA+Q  + ++ L   + +   + +GG S+  + 
Sbjct: 61  FERLKNHSARV----GIRALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQF 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            D+     IVV TPGR    I    L++   + VV DEAD + ++GF + +  I+   P 
Sbjct: 117 GDMHTNPDIVVATPGRFLHLIVEMELSLVTTEYVVFDEADRLFEMGFAEQLREIMARLPD 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT+   +   A+   K+   V + ++ +    +  +       D+   ++  
Sbjct: 177 TRQTTLFSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQTQFFHCRREDKPALLLYA 236

Query: 239 LRYHGAKNAI--VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           LR    K  +  +F +T+  V    ++LA+  F+     G L    R   +   R+G+A 
Sbjct: 237 LREIIPKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSLDPTARKINVAKFRNGKAP 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + + TDVAARGID+P L+ VI+ +  + P+  +HR GR  RAGR G +   I  +     
Sbjct: 297 ILLVTDVAARGIDIPMLDYVINYDFPAAPKLFVHRVGRVARAGRSGTAYSFIGNDELPYV 356

Query: 357 ERL 359
             L
Sbjct: 357 VDL 359


>gi|255323803|ref|ZP_05364929.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298983|gb|EET78274.1| dead/deah box helicase [Corynebacterium tuberculostearicum SK141]
          Length = 441

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 118/398 (29%), Positives = 187/398 (46%), Gaps = 6/398 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I + L+ RG     ++QE  L   L  +D++  A+TG GKT  FG+ L   +  + D  
Sbjct: 19  EICDGLATRGITRTFAIQELTLPIALSGQDLIGQARTGMGKTYGFGVPLLDRVFDDADID 78

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P AL + PTRELA QV  +L+   A   V +A   GG     + + L  G  +++
Sbjct: 79  ELDGTPRALVVVPTRELAQQVTEDLQVAAAHLPVRLASIYGGRPYEEQIKKLNKGVDVII 138

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM---FS 186
           GTPGRL D      L +  +  +VLDEADEMLDLGF   +E IL +        M    +
Sbjct: 139 GTPGRLIDLHERGNLQLDRVAILVLDEADEMLDLGFLPSVEAILKALDGNAHQTMLFSAT 198

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
              +          +   +R     ++  HS            D+   + + L+  G   
Sbjct: 199 MPGAILTLARRFMEKPIHIRAESGEQDFTHSSTRKVTFQAHRMDKVAVVAHALQGSGRGR 258

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ + ++    LA   F V A+ G+L Q+ R  +L   R G+  + +ATD+AAR
Sbjct: 259 TIIFARTKRAAAQLADDLARRGFHVGAVHGDLGQKSREKSLHAFRTGQVDILVATDIAAR 318

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+  VI+ ++  +P   +HR GRTGRAG  G ++ ++  +   + + +  E ++ 
Sbjct: 319 GIDVDDVTHVINYQVPDDPMTFVHRIGRTGRAGHTGTAITMVGYDELGKWQVINDELDLG 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              EP P        +  + L  P  +D   G E K+V
Sbjct: 379 ---EPNPPQWFSTSPELAQALDIPAEVDETVGPETKVV 413


>gi|304312547|ref|YP_003812145.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
 gi|301798280|emb|CBL46502.1| Putative ATP-dependent RNA helicase, RhlB [gamma proteobacterium
           HdN1]
          Length = 716

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/366 (32%), Positives = 194/366 (53%), Gaps = 4/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + E G+ + T +Q   L   L+++D++  AQTG+GKT AF + +  TLL E 
Sbjct: 271 LDPRLQKGIDELGFSHCTPIQSEALPLSLKQRDIIGKAQTGTGKTAAFLITIIQTLLTEP 330

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNG 124
           ++    +  P AL +APTRELA+Q+ ++   L   T + +   +GG+   ++++      
Sbjct: 331 EQEERYNGEPRALILAPTRELALQIEKDALPLLKHTSLNMVSIVGGMDYKKQQKHLQDEI 390

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVVGTPGRL D +RGK L +S  + +V+DEAD MLD+GF  D++ ++  +P K     
Sbjct: 391 VDIVVGTPGRLIDFVRGKDLFLSETEILVIDEADRMLDMGFIPDVKRLVRETPYKTYRQT 450

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  I  LA N+  D  ++ I  E+  ++ +D +  +V    + N + N++   
Sbjct: 451 LLFSATFTRDIINLASNWTTDPAQIEIEPESVANASVDQKIYIVTAEQKINVLYNLITQQ 510

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + R      T  L     +V  LSGE+ Q +R   L+  R+GR RV +ATD
Sbjct: 511 ELDRVMVFVNRRDETRDLTTRLKALGLRVAMLSGEIPQHKRLRTLENFRNGRLRVMVATD 570

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G SV    +        +   
Sbjct: 571 VAGRGIHIEGISHVVNYTLPEDPEDYVHRIGRTGRAGATGTSVSFACEEDAFLLPAIQAL 630

Query: 363 ANVSVV 368
               + 
Sbjct: 631 LGEEIQ 636


>gi|124801418|ref|XP_001349688.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|3845295|gb|AAC71961.1| DEAD/DEAH box helicase, putative [Plasmodium falciparum 3D7]
 gi|156072124|gb|ABU45413.1| DEAD-box helicase 2 [Plasmodium falciparum]
          Length = 562

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 188/368 (51%), Gaps = 10/368 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  NI + I E++ E G+   T +Q  IL     +KD++  ++TGSGKT  F + +  
Sbjct: 157 TFEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQ 216

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L      F       AL I+PTREL +Q+ +  + L     + +    GGV +  +  +
Sbjct: 217 DLKVNKQSF------YALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLN 270

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    +++V TPGR+ DH+      N+ +LK +V DEAD++L   F   I  +L   P  
Sbjct: 271 LAKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPN 330

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R   +FSAT++  +  L K   K+ V+V ++++    S +    + + L  +   + ++ 
Sbjct: 331 RITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLC 390

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            ++  +N I+F +T A+  +          + + L G+L+Q +R ++L   +  +  + I
Sbjct: 391 FHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNSFKVNKYNILI 450

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +T V ARG+DL D+++VI+ ++  + +  +HR GRT RAGR G S+  + Q        +
Sbjct: 451 STQVGARGLDLQDIKIVINFDI-CSCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAI 509

Query: 360 FREANVSV 367
            ++ N  +
Sbjct: 510 EKQLNKKI 517


>gi|56202232|dbj|BAD73664.1| putative DEAD box protein [Oryza sativa Japonica Group]
 gi|56202381|dbj|BAD73793.1| putative DEAD box protein [Oryza sativa Japonica Group]
          Length = 423

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 183/380 (48%), Gaps = 22/380 (5%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q  ++   L+ +DV+   QTGSGKT AF L +   LL    R        A
Sbjct: 1   MGWKAPTRIQAEVIPFALQGRDVIGVGQTGSGKTAAFALPIIQALLEHEHRP----CFFA 56

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR----------ERRDLQNGAHI 127
             +APTRELA+Q+ ++ E L +   +  +V     S               +  +     
Sbjct: 57  CVLAPTRELAIQIAKQFEALGSAISLQCSVVWWRSSRACLPEHLRKGFDSWQLWKERNSR 116

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V      L      KG + + LK +VLDEAD++L + F+  ++ IL+  PK+RR  +FSA
Sbjct: 117 VGTPGRLLDHLTNTKGFSFNKLKYLVLDEADDLLKVDFQKAVDDILNVIPKERRTFLFSA 176

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   K+ V+V +AS+      +     +V    +D  ++++L        
Sbjct: 177 TMTEKVKKLRRACLKNPVKVEVASKYSLVDTLRQDLYVVPAKYKDCYLIHVLNKMPGSMI 236

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T  S      +L    F+ +++SG++SQ +R  AL   R     + + TDVA+RG
Sbjct: 237 MVFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDVASRG 296

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  +++VI+ +   N ++ +HR GRT RAG+ G +V ++ Q         F+     +
Sbjct: 297 LDIQGVDVVINYDFPLNSKDYIHRVGRTARAGQSGYAVSLVNQFE----GEFFKLTEQFL 352

Query: 368 VWEPAPSVEAIRERDAQRIL 387
             E  P+    R+ DA  I+
Sbjct: 353 GGEEIPA----RKVDADEIM 368


>gi|330961130|gb|EGH61390.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|322495556|emb|CBZ30861.1| putative ATP-dependent RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 926

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 178/403 (44%), Gaps = 25/403 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +   +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 473 VEDFADLLVEPALAANIERCGYKKPTPVQRYGIPVALSGSDLMACAQTGSGKTAAFLIPV 532

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+AL +APTRELAVQ+  E+  L   T +   V  GG    +
Sbjct: 533 VQYMLVHGVSPARQRKSYPIALVLAPTRELAVQIFDEVRKLTFNTDIFYDVVYGGTRYPQ 592

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE------ 170
                     I+V  PGRL D    + L+ S +K ++LDEAD ML++GF + IE      
Sbjct: 593 RFEQ-----DILVACPGRLRDMFNEEYLSFSAIKFLILDEADRMLEMGFEEQIEELVASR 647

Query: 171 -FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              + +  +++  +  +      +    +  ++    + +        +I      V  +
Sbjct: 648 YTDMPTVDERQTFMFSATFPQRILNLAKRYLRRKYYLLTVGRVGSTTKNITQTIEHVPDN 707

Query: 230 DRDNAIVNILR-YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ + ++ I+  +  +   ++F  T+       + L         + G+  QQ+R  AL+
Sbjct: 708 EKMDRLLQIIYGHEMSDMVLIFVETKKMAEDVNRRLHREGISSTTIHGDRRQQDREAALE 767

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +     + +ATDVA+RG+D+PD+  V+  +L    ++  HR GRTGRAG KG++    
Sbjct: 768 DFKQKVTPILVATDVASRGLDIPDVAHVVQFDLPQEMDDYTHRIGRTGRAGNKGIATAFY 827

Query: 349 PQNMQR---RAERLFREANVSVV-----WEPAPSVEAIRERDA 383
            +N +R      + F E    +             EA+  RD 
Sbjct: 828 NRNNRRLALDLHKYFSEHGQEIPKWFQQEAELVEGEALLSRDM 870


>gi|85115638|ref|XP_964910.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
 gi|28926707|gb|EAA35674.1| hypothetical protein NCU09093 [Neurospora crassa OR74A]
          Length = 593

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 97/390 (24%), Positives = 173/390 (44%), Gaps = 28/390 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   GY   T +Q   +    +  DV+  AQTGSGKT A+ + + + L+ + 
Sbjct: 140 LHPAMLRNVELAGYDVPTPIQRYCVPAISQGHDVIAIAQTGSGKTAAYMIPIINKLMGKA 199

Query: 67  DRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +                    PL + + P+RELAVQ+  E      ++ +   V  G
Sbjct: 200 KKLAAPRPNPVTYQPGIDQPCRAEPLVVVVCPSRELAVQIFNEARKFCYRSMLRPCVIYG 259

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDI 169
           G  +  +   +  G  I+V +PGRL D +    + ++  ++ +V+DEADEML   ++D++
Sbjct: 260 GGPMREQMEQIAKGCDILVASPGRLIDFMDRPDILSLRRVRYMVIDEADEMLHDDWKDEL 319

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           + I           + ML  +     A      +   + VR+ +      HS+I    + 
Sbjct: 320 DQILSGGDQEEGNIKYMLFSATFPKAARDLATTHLADNHVRLRVGRAGSTHSNIKQDVIW 379

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V    +  A +++L        I+F +++ +       L       V++  + +Q+ER  
Sbjct: 380 VEPYLKKQACLDLLNTVPPGRTIIFVNSKRAADELDDFLFNKGVPCVSMHSDRTQREREA 439

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSGRTGRAGRK 341
           A++  R GR+ V I T V ARGID+ ++  VI+ +L S      E  +HR GRTGR G +
Sbjct: 440 AMRAFRAGRSPVLITTAVTARGIDVRNVLHVINFDLPSTMYGGIEEYVHRIGRTGRIGHR 499

Query: 342 GMSVFVIPQNMQRRAERLFR---EANVSVV 368
           G++     +  +  A  L R   E    V 
Sbjct: 500 GLATSFYTERDEDLASVLTRTLLETGQEVP 529


>gi|329938804|ref|ZP_08288200.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329302295|gb|EGG46187.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 673

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 212/450 (47%), Gaps = 10/450 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 33  TFADLGLPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPALA 92

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 93  TLAGAR---TEKHKPRAVIMTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 149

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 150 LERGVDVLVATPGRLRDLINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQIPAGG 209

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL   Y  + V   + +     + + +  ++V    +D A V    
Sbjct: 210 QRMLFSATMENEIKTLVDRYLNNPVHHEVDAAQGAVTTMSHHILIV--KPKDKAPVTAAI 267

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 268 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 327

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 328 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLM 387

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A V        S  A     A+  +     +  +Q  E        A+ +   +    
Sbjct: 388 EDAGVDASRHVIQSAGAFDPEVAE--ITGARSMTEVQA-ESAGNAAQQAEREVAYLTKQL 444

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
            R  R      EE   +   + R+R  D  
Sbjct: 445 ERATRRAGELREEADRLVARAARERGEDPE 474


>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
 gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
           49726]
          Length = 446

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 5/374 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I + L++RG     ++QE  L   L  +D++  A+TG GKT  FG+ L  
Sbjct: 10  TFAELGVAAEICDGLADRGIARTFAIQELTLPIALNGQDLIGQARTGMGKTFGFGVPLLD 69

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + D       P AL + PTRELA QV  +L+   A   V +A   GG     + + 
Sbjct: 70  RVFDDADIAPLDGTPRALIVVPTRELAQQVTADLQDAAAHLPVRLASIYGGRPYEEQIKL 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  +V+GTPGRL D      L + H+  VVLDEADEMLDLGF   IE IL++     
Sbjct: 130 LQRGVDVVIGTPGRLLDLHERGDLVLRHVAIVVLDEADEMLDLGFLPSIEAILEALDGNA 189

Query: 181 RMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              M    +   +    +     +   +R    ++   H             D+   I +
Sbjct: 190 HQTMLFSATMPGAILNLSRQFMNKPVHIRAESEADEVTHETTRKVTFQAHRMDKVPVIAH 249

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G   +I+F  T+ S ++    LAE  F V A+ G+L Q+ R  +LQ  R G   +
Sbjct: 250 ILQAQGRGRSIIFTRTKRSAAQLADDLAERGFHVGAVHGDLGQKSREKSLQAFRSGEVDI 309

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+ D+  VI+ ++  +P   +HR GRTGRAG  G +V ++  +   +  
Sbjct: 310 LVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGTAVTLVGYDELAKWR 369

Query: 358 RLFREANVSVVWEP 371
            +  E  +     P
Sbjct: 370 VINDELGLDTATPP 383


>gi|328784461|ref|XP_623668.3| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1 [Apis
           mellifera]
          Length = 527

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/397 (26%), Positives = 177/397 (44%), Gaps = 21/397 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  N P  + + + ++G+   T++Q       +   +++  AQTGSGKT+ + L  
Sbjct: 114 IQHFEEGNFPDHVMQCIRKQGFSEPTAIQAQGWPIAMSGHNMVGIAQTGSGKTLGYILPA 173

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + ++    +    P+AL +APTRELA Q+ +                 GG     + 
Sbjct: 174 IVHISSQQP-LNHGDGPIALILAPTRELAQQIQKVTCSFGYV---RSTCIFGGAPKGSQA 229

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 230 RDLEQGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 289

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNA--- 234
            R++LM+SAT    +  LA+ Y  D  ++NI S     + +I     +    ++      
Sbjct: 290 DRQVLMWSATWPKEVRNLAEEYLVDYTQLNIGSLTLSANHNILQIVDVCEEDEKQTKLQN 349

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          I+F  T+  V   TK +  + +  V + G+ SQ ER   L     
Sbjct: 350 LLQEISNVSPDGGKTIIFVETKKKVESITKTIRRYGWPAVCIHGDKSQLERDFVLSDWNK 409

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+        +    +D+ D++ VI+ +  ++ E+ +HR GRTGR+   G S        
Sbjct: 410 GKVHYIYFNKIV--SLDVDDVKYVINFDYPNSSEDYIHRIGRTGRSNNSGTSYAFFTPQN 467

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERDAQRI 386
            R+A+ L    REA   +     P +  + +R+   I
Sbjct: 468 GRQAKSLVNVLREAKQIIN----PKLMELADRNGNDI 500


>gi|324507413|gb|ADY43143.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 492

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 172/379 (45%), Gaps = 13/379 (3%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE      P+V+   L    +   T +Q          +D++  A+TGSGKT+AF L  
Sbjct: 58  VFEFNESGFPEVLVNMLYSS-FERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPG 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +  R      P  L + PTRELA QV           G+ V    GG +   + 
Sbjct: 117 IIHTTKQPPR-GRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQA 175

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  + + TPGRL D +     N+     +VLDEAD MLD+GF   I  I+     
Sbjct: 176 RDLERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEPQIRKIVSQIRP 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LMFSAT    +  LA ++Q D   +N+ S     N   + +           R   
Sbjct: 236 DRQTLMFSATWPKEVRALASDFQSDHAFLNVGSLELAANHNITQVVEVVEEYQKQGRMMT 295

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        +VF  T+      T+ +    +  + + G+ +Q ER   L   + G+
Sbjct: 296 LLTDIMNQPECKTLVFVETKRKADDLTRSMRRDGWPTLCIHGDKNQGERDWVLSEFKSGK 355

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +  +N E+ +HR GRT R  +KG +      +   
Sbjct: 356 TPILLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTARCEKKGTAYTFFTPSNAP 415

Query: 355 RAERLFR---EANVSVVWE 370
           +A  L +   EAN  V  E
Sbjct: 416 KARDLIKVMEEANQVVPPE 434


>gi|157073998|ref|NP_001096708.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
 gi|160380636|sp|A5D7C1|DDX52_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=DEAD box protein 52
 gi|146186791|gb|AAI40502.1| DDX52 protein [Bos taurus]
 gi|296477012|gb|DAA19127.1| probable ATP-dependent RNA helicase DDX52 [Bos taurus]
          Length = 596

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 160 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 219

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  L   TG  + +        +
Sbjct: 220 PILMHLKQPTNK-----GFRALIISPTRELASQIHRELVKLSEGTGFRIHMIHKAAVAAK 274

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 275 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 334

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K +R +  +            N          A  +   +       + + 
Sbjct: 335 SIFLACTSHKVKRAMFSATFAYDVEQWCRLNLDSVITVSVGARNSAVETVEQELLFVGSE 394

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 395 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVH 454

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 455 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 514

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 515 TEDDKPLLRSVANVIQQAGCPVPE 538


>gi|229550132|ref|ZP_04438857.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|293383060|ref|ZP_06628978.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|293387787|ref|ZP_06632331.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|307271133|ref|ZP_07552416.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|307273339|ref|ZP_07554584.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|307277485|ref|ZP_07558577.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|307288127|ref|ZP_07568137.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|312900642|ref|ZP_07759939.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|312904121|ref|ZP_07763289.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|312907351|ref|ZP_07766342.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|312909967|ref|ZP_07768815.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|312952381|ref|ZP_07771256.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|229304718|gb|EEN70714.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
 gi|291079725|gb|EFE17089.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis R712]
 gi|291082857|gb|EFE19820.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
           faecalis S613]
 gi|306500863|gb|EFM70181.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
 gi|306505750|gb|EFM74928.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
 gi|306509866|gb|EFM78891.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
 gi|306512631|gb|EFM81280.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
 gi|310626379|gb|EFQ09662.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
 gi|310629765|gb|EFQ13048.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
 gi|310632597|gb|EFQ15880.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
 gi|311289925|gb|EFQ68481.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
 gi|311292123|gb|EFQ70679.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
 gi|315027381|gb|EFT39313.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
 gi|315033779|gb|EFT45711.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
 gi|315036865|gb|EFT48797.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
 gi|315145689|gb|EFT89705.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
 gi|315147874|gb|EFT91890.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
 gi|315150649|gb|EFT94665.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
 gi|315153344|gb|EFT97360.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
 gi|315155879|gb|EFT99895.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
 gi|315157954|gb|EFU01971.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
 gi|315160224|gb|EFU04241.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
 gi|315164257|gb|EFU08274.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
 gi|315166649|gb|EFU10666.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
 gi|315170067|gb|EFU14084.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
 gi|315174457|gb|EFU18474.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
 gi|315578466|gb|EFU90657.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
 gi|327535018|gb|AEA93852.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           faecalis OG1RF]
          Length = 452

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 7   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 66  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 120 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 180 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNQIIYQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 360 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 403

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 404 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 449


>gi|294948517|ref|XP_002785780.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239899848|gb|EER17576.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 579

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 215/471 (45%), Gaps = 18/471 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +   
Sbjct: 85  KKFTDLQICDPLKEALTACNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPAL 144

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+    RF P +    + I+PTRELA+Q+    + +         + +GGV+   E  
Sbjct: 145 ELLV--ATRFQPKNGTGVMVISPTRELAMQIYDVCKRVVVVLSQTYGIVMGGVNRKNEAD 202

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L  G +I+V TPGRL DH++       ++L ++V+DEAD +L +GF +D+  IL   PK
Sbjct: 203 KLSRGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKILPK 262

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-----YRAVLVALSDRDN 233
           KR+  +FSAT +  +  LA+   K  + V     +   +           V+V   DR  
Sbjct: 263 KRQTSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDRLR 322

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+++ G+  Q  R          
Sbjct: 323 LLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFCQM 382

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNM 352
            + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R A   G ++  +    
Sbjct: 383 ESGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMPEE 442

Query: 353 QRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                R  R++ V+ + E    P+  A  +   +++++    L     D  +      A 
Sbjct: 443 LGFL-RYLRKSGVTTLNEYVFPPAKVANIQHQLEKLVETNYHLHRASRDAYRSYLHAYAA 501

Query: 411 HDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           H  +      +    ++ +    A      ++L   +   R   +  K G 
Sbjct: 502 HASKDCFDVHSLDLQKLAKCFGFAVPPKVDLNLKDTKKSDRGGRKMVKSGR 552


>gi|148235554|ref|NP_001080632.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus laevis]
 gi|28436904|gb|AAH46696.1| Ddx19-prov protein [Xenopus laevis]
          Length = 487

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 17/391 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 100 VKSFEELRLKPELLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 159

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +   N        P  L ++PT ELA+Q G+ +E +   + + +A  + G  + R
Sbjct: 160 AMLSRVDPAN------RYPQCLCLSPTYELALQTGKVIEQMGQFSNIKLAYAVRGKKLER 213

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  ++      GT    C  +R        +  +   +            I       
Sbjct: 214 GHKIPEHIVIGTPGTVLDWCSKLRFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQKMLP 273

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              + +L  +           K   +  +      E    +   Y  +     D+  A+ 
Sbjct: 274 RDCQMLLFSATFEESVWRFAQKVVPEPNIIKLKREEETLDTIKQYYVMCNNRDDKFRALC 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           NI        A++FC TR + S     L +   QV  LSGE+  ++R+  +   R+G+ +
Sbjct: 334 NIYGSITIAQAMIFCHTRKTASWLAGELYKEGHQVAMLSGEMMVEQRAAVIDRFREGKEK 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI-P 349
           V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++  
Sbjct: 394 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDS 453

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           ++     +R+ +  +  +    A  ++ I +
Sbjct: 454 KHNMEILQRIQQHFSKKIEHLDADDIDEIEK 484


>gi|169773397|ref|XP_001821167.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Aspergillus
           oryzae RIB40]
 gi|91207407|sp|Q2UH00|PRP28_ASPOR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|83769028|dbj|BAE59165.1| unnamed protein product [Aspergillus oryzae]
          Length = 803

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 108/417 (25%), Positives = 193/417 (46%), Gaps = 36/417 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++   +P+ + E +++ GY   T +Q A +   ++ +D++  A TGSGKT +F L L
Sbjct: 366 MRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPL 425

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +      G  V   +GG S 
Sbjct: 426 LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSF 485

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 486 EEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 545

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------ 216
           + P            +    +     +    +  + +                       
Sbjct: 546 ALPVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTI 605

Query: 217 -------SDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH 267
                    ++ R   +A  D+    +  +          IVF + + +     + + + 
Sbjct: 606 GSAGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQW 665

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F  V L G  +Q++R  AL  +R+G+  V +ATD+A RGID+PD+ LVI+  +++  E+
Sbjct: 666 GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIES 725

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
             HR GRTGRAG+ G+++  +           +++  ++++S + E     EA + +
Sbjct: 726 YTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRLPEELRKHEAAQSK 782


>gi|314924108|gb|EFS87939.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
 gi|314982201|gb|EFT26294.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315103937|gb|EFT75913.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
 gi|315106118|gb|EFT78094.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
          Length = 491

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|255942831|ref|XP_002562184.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586917|emb|CAP94570.1| Pc18g03460 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 790

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/412 (26%), Positives = 197/412 (47%), Gaps = 31/412 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E  ++P+ + E +   GY + T++Q A +   ++ +D++  A TGSGKT AF L L
Sbjct: 356 MRSWEESSLPKRLLELVERVGYKDPTAIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL 415

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      + + +     P A+ +APTRELA Q+  E +      G  V   +GG S+
Sbjct: 416 LVYISALPRLDENEWRKNEGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSL 475

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 476 EEQAFSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 535

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------- 220
           + P            +    +  +  Q       + +   + +                 
Sbjct: 536 ALPVTNEKPDTEEAENSMAMSQHQYRQTMMYTATMPAAVERIARKYLRRPAIITIGGVGE 595

Query: 221 ------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
                  R  +++  D+    +  +          IVF + + +     + + +  F  V
Sbjct: 596 AVDTVEQRVEMISGEDKRKKRLAEILSSGDFRPPIIVFVNIKRNCDAIAREIKQMGFSSV 655

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G  +Q +R  AL  +R+G   V +ATD+A RGID+PD+ LVI+  ++++ E+  HR 
Sbjct: 656 TLHGSKTQDQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRI 715

Query: 333 GRTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           GRTGRAG+ G+++  +     ++    +++  ++ +S V E     EA + +
Sbjct: 716 GRTGRAGKSGVAITFLGSEDSDVMYDLKQMLIKSPISRVPEELRKHEAAQSK 767


>gi|16800556|ref|NP_470824.1| hypothetical protein lin1488 [Listeria innocua Clip11262]
 gi|16413961|emb|CAC96719.1| lin1488 [Listeria innocua Clip11262]
          Length = 435

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 197/394 (50%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +   + + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPSDEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|330944943|gb|EGH46750.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 420

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 35  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 95  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 148

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 149 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 208

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 209 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 267

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 268 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 327

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 328 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 387

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 388 ELQKAPLNWQ 397


>gi|302189857|ref|ZP_07266530.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           642]
          Length = 459

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|255078160|ref|XP_002502660.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
 gi|226517925|gb|ACO63918.1| DEAD/DEAH box helicase [Micromonas sp. RCC299]
          Length = 611

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 116/398 (29%), Positives = 188/398 (47%), Gaps = 29/398 (7%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE+   P+ +  AL ++GY + T +Q       ++ KDV+  A+TGSGKT  F L  
Sbjct: 155 ITRFEDAPFPRKLVAALLKQGYESPTPIQAQAWPIAVKGKDVIAIAKTGSGKTCGFLLPA 214

Query: 59  ASTLLAENDRFSP------------ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
            + ++ +    +P            A  P A+ +APTRELA+Q+G E        G  V 
Sbjct: 215 LAKIVKQGATAAPDMEMVDGRFRPAAVVPHAIVLAPTRELAIQIGDECAKFCPAAGAKVV 274

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH-----IRGKGLNISHLKAVVLDEADEML 161
              GG S   + R L++GA ++V TPGRL D           ++  +   VVLDEAD ML
Sbjct: 275 TLYGGASKGDQLRALRSGADVLVATPGRLHDFLAPPPGFSAPVSARNAHYVVLDEADRML 334

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDA----VRVNIASENRQHS 217
           D+GF   I+ I+   P  R+ LMF+AT    +  +A  + +         +       + 
Sbjct: 335 DMGFEPQIKKIIKMCPTARQTLMFTATWPDGVRKIADTFLQPDAALVRIGDGGDRLTANK 394

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNA--IVFCSTRASVSRFTKVLAEHLFQVV-AL 274
            I     +V    + +  + +L+ +    A  IVFC T+       + +     +   A+
Sbjct: 395 SITQTIEIVTEDQKLDRAIAVLKENLVDGARGIVFCGTKRRCDFIDRKMKAMGLRSAGAI 454

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+  Q ER  +L + R G+A + +ATDVAARG+D+P + +V+  +     E+ +HR GR
Sbjct: 455 HGDKDQAEREYSLDLFRKGKAPLLVATDVAARGLDIPGVTVVLVYDFPLQVEDYVHRIGR 514

Query: 335 TGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVW 369
           TGRAG++G +     +      R   ++   A   V  
Sbjct: 515 TGRAGKEGKAHCFFTEEDAGAARELVQILEGAEQEVPE 552


>gi|66043783|ref|YP_233624.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254490|gb|AAY35586.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
           N-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 473

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 80  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 134 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 194 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 253 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 373 ELQKAPLNWQ 382



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 397 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 456

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 457 RLNNGKIKGKSLRVRIL 473


>gi|302533878|ref|ZP_07286220.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302442773|gb|EFL14589.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 465

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/380 (32%), Positives = 192/380 (50%), Gaps = 6/380 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 58  FEDMDMPEALLKTLAAQGVTEPFPIQAATLPNSLAGRDLLGRGRTGSGKTLAFGLALLAR 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +  +APLA+ + PTRELA QV   L        + +A  +GG+S++R+   L
Sbjct: 118 ---TAGRRAQPTAPLAMVLVPTRELAQQVTDSLSPYATSVNLRIATVVGGMSINRQAGAL 174

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I     ++S +   VLDEAD+M D+GF   +  +L     + +
Sbjct: 175 RRGAEVLVATPGRLKDLIDRGDADLSQVSITVLDEADQMTDMGFMPQVTALLKQVAPEGQ 234

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       S +++  + V     D   V     
Sbjct: 235 TMLFSATLDKNIDKLVKMFLDDPVAFSVDPSAGAVSTMEHHVLYVMDET-DKKAVATRIA 293

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+  V R  K L     +   L G  SQ +R+  L   + G     IAT
Sbjct: 294 ARDGRVIMFVDTKRGVDRMVKRLLADGVRASGLHGGRSQPQRNRTLDWFKTGEVTALIAT 353

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 354 NVAARGIHIDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDQKRDMSRLMS 413

Query: 362 EANVSVVWEPAPSVEAIRER 381
           +A ++       S +    R
Sbjct: 414 DAGITPRTAQVKSSDEELSR 433


>gi|120610574|ref|YP_970252.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
           citrulli AAC00-1]
 gi|120589038|gb|ABM32478.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
          Length = 619

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 140/521 (26%), Positives = 208/521 (39%), Gaps = 60/521 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T VQE  +   +       K  D++VS+QTGSGKT AF L + 
Sbjct: 56  LAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAFLLPVL 115

Query: 60  STL------------------------------------LAENDRFSPASAPLALAIAPT 83
            TL                                       N R   A+ P AL + PT
Sbjct: 116 HTLIGQQAAAQAAARAEYEAAVAEAAARGEPAPKRAKRKDPTNPRHFKAATPGALVLCPT 175

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 176 RELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQRSMQ 235

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I + + ++++ +MFSAT +P I  LA     D
Sbjct: 236 IKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAMRVMHD 295

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                      + + +  +             +   + + LR      A+VF ST+    
Sbjct: 296 GGASVKKVQIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDTSINQAVVFASTQVECD 355

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 356 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 415

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             L    E+  HR GRTGRAGR G++V       +R+   +   +      E  P +E  
Sbjct: 416 FGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEVYSKQPFKAEVIPGLEP- 474

Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVS 438
                QR  Q          D     D   A            R    G           
Sbjct: 475 ----QQRPPQARSEFGGRGRDGGGFRDRRPAGGGRGGFGDRHGRGRDDGRGFAPRDDQRG 530

Query: 439 LVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
                D+     R  + G G R + +G        G KQ  
Sbjct: 531 FAPREDQRGFAPRDDQRGFGPRRDGEGY-------GRKQGF 564


>gi|168011374|ref|XP_001758378.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690413|gb|EDQ76780.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 405

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 168/346 (48%), Gaps = 9/346 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + + + E GY   T +Q   +   L E++    A TGSGKT+AF L +   L     R
Sbjct: 33  KYLMKNIKEAGYTEPTPIQRQAITTLLAERECFACAPTGSGKTLAFSLPILMKL-----R 87

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL + PTRELA+Q  REL+ L   T     V +   ++            I+
Sbjct: 88  VPSKEGLRALVLCPTRELALQTTRELKKLTVGTKFR--VRVMTKALALCNDFSNLPCDIL 145

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FILDSSPKKRRMLMFSA 187
           V TP RL   ++G  +++S ++ +VLDE+D++ ++GF + I+  +   +  K    +FSA
Sbjct: 146 VSTPLRLDALLKGSKIDLSKVEFLVLDESDKLFEMGFVEQIDSVVAACTNPKIVRTLFSA 205

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKN 246
           T+   +  LA++   DA+R+ I   N     +  R   + +   +  A+  I        
Sbjct: 206 TLPDTVEELARSIMHDAIRITIGERNSASQTVRQRLVFVGSEEGKILALRQIFNESLRPP 265

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  ++   +   K LA     + ++  + +Q +R  A++  R+G+  V IATD+  R
Sbjct: 266 VLIFVKSKERAAELHKQLAFDNLSIDSIHADRTQAQRDAAVERFREGKTWVLIATDLMGR 325

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+D   L  VI+ +   +  + +HR GR+GRAGR G +V    ++ 
Sbjct: 326 GMDFKGLNCVINYDFPPSISSYIHRVGRSGRAGRAGEAVTFYTEDD 371


>gi|255944023|ref|XP_002562779.1| Pc20g02210 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587514|emb|CAP85550.1| Pc20g02210 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 692

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 177/381 (46%), Gaps = 26/381 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           +  V+ E +   GY + T+VQ   +   L   DV+  AQTGSGKT AF + + S L+ + 
Sbjct: 149 LHPVMLENVRLCGYEHPTAVQSYAIPAVLANLDVIAVAQTGSGKTGAFLIPILSKLMGKA 208

Query: 66  ----------NDRFSPAS-----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
                      +RF+P        PL L + PTRELA Q+  E   L  ++ +   V  G
Sbjct: 209 RKLAAPRPNTAERFNPREDAVRAEPLVLIVCPTRELATQIFDEARRLCYRSMLRPCVAYG 268

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDI 169
           G    ++R +LQ G  I++ TPGRL D +    + ++  ++  V+DEADEML+  + ++ 
Sbjct: 269 GAPSRQQREELQKGCDILIATPGRLLDFMAQTHVLSLRRVRYTVIDEADEMLESDWEEEF 328

Query: 170 EFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           + I+     +     R M+  +           +   ++ VR+ +      H ++    +
Sbjct: 329 KKIMSGGDVNEDADHRYMMFSATFNKEFRKLAKQYLNENHVRLRVGRAGSSHHNVVQDII 388

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +  A+ ++L        ++F +++  V      L        ++ G  +Q+ER 
Sbjct: 389 WADQPKKMRALYDLLISMPPVRTLIFVNSKEQVDFVDDYLFNSGMPTTSIHGGRTQRERE 448

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGR 340
           +A++  R  +  + +AT V+ARG+D+ ++  VI+ +L S         +HR GRT R G 
Sbjct: 449 DAMRAFRTAKCPIMVATGVSARGLDVVNVLHVINYDLPSAIHGGITEYVHRIGRTARIGN 508

Query: 341 KGMSVFVIPQNMQRRAERLFR 361
           +G++        +  AE L +
Sbjct: 509 EGIATSFYNDRDEGIAEDLVK 529


>gi|291404258|ref|XP_002718495.1| PREDICTED: nucleolar protein GU2 [Oryctolagus cuniculus]
          Length = 735

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/392 (28%), Positives = 181/392 (46%), Gaps = 15/392 (3%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L  
Sbjct: 136 SFSNFSISEETVKLLKGRGVTYLFPIQVKTFGPIYEGKDLIAQARTGTGKTFSFAIPLIE 195

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   
Sbjct: 196 RLQRNQETVKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINH 253

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K  
Sbjct: 254 IRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTD 313

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSD 230
                   +  A               +   +      +                 +   
Sbjct: 314 SEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRP 373

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                V  +       AI+FC T+ +V+               L G+++Q +R   L+  
Sbjct: 374 AVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGF 432

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +     
Sbjct: 433 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQP 492

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
             + +   + ++A ++      PS   + +  
Sbjct: 493 RERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 524


>gi|327332290|gb|EGE74026.1| ATP-dependent RNA helicase [Propionibacterium acnes HL097PA1]
          Length = 491

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|169853351|ref|XP_001833356.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
 gi|116505566|gb|EAU88461.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coprinopsis
           cinerea okayama7#130]
          Length = 748

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 124/421 (29%), Positives = 202/421 (47%), Gaps = 36/421 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +IPQVI + +   GY   + +Q   +   L+ +DV+  A+TGSGKT AF + + + +L 
Sbjct: 326 SDIPQVILDCIERIGYKEPSPIQRQAIPIGLQNRDVIGIAETGSGKTAAFVIPMLAFILT 385

Query: 65  EN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL +APTRELA Q+  E +      G      +GG +V  ++ +L+
Sbjct: 386 LPIFTDDNRHLGPYALILAPTRELAQQIESETKKFATPLGYKCVSIVGGRAVEEQQFNLR 445

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA I++ TPGRL D +    L +S  + +V+DEAD M++LGF  D+ FILD  P     
Sbjct: 446 EGAEIIIATPGRLKDVLERHVLVLSQCRYIVMDEADRMVNLGFEADLTFILDQLPTDTME 505

Query: 183 LM------------------------FSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                                     FSAT+ PA+  LA+ Y K    + I    R    
Sbjct: 506 GEEQGEKMDVDGETMVKKGRTRVTTLFSATMPPAVERLARKYLKKPATITIGEAGRAVDT 565

Query: 219 IDYRAVLVALSDRDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           ++ +   V   ++    +  +      A   IVF + + +     K L+   +    L  
Sbjct: 566 VEQKVEFVNGDEKKKQRMLDILNSGLYAPPIIVFVNQKKTADMVAKDLSRAGWSTSTLHS 625

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             +Q++R  ALQ +R G A + +ATD+A RGID+ D+ LVI+ ++++  E  +HR GRTG
Sbjct: 626 GKNQEQREAALQALRTGDADILVATDLAGRGIDVQDVTLVINYQMANTIEAYVHRIGRTG 685

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV--------EAIRERDAQRILQ 388
           RAG+ G ++  +  +       L +E + S V +  P +        +  RE   +R ++
Sbjct: 686 RAGKLGTAITFLTNDDDEVMYDLKQEISKSPVSKVPPELAKHEAAQHKVSREMKRKREVE 745

Query: 389 D 389
           D
Sbjct: 746 D 746


>gi|26991630|ref|NP_747055.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
 gi|24986724|gb|AAN70519.1|AE016694_2 ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440]
          Length = 461

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 203/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ ++  +V + S +  +   + R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQI-EQRFIEIDPQQRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
              N  + W+   S++
Sbjct: 361 ALQNSPLRWDQLDSLK 376



 Score = 60.8 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 24/75 (32%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G        +   ++ G K K     ++  L   +GI  + +G I +     FV V 
Sbjct: 376 KNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVE 435

Query: 515 ADGVDLLRRTVKLDK 529
                   + +   K
Sbjct: 436 RALAKQAMQRLNSGK 450


>gi|71896415|ref|NP_001026109.1| probable ATP-dependent RNA helicase DDX49 [Gallus gallus]
 gi|53130312|emb|CAG31485.1| hypothetical protein RCJMB04_6o15 [Gallus gallus]
          Length = 402

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 118/380 (31%), Positives = 187/380 (49%), Gaps = 18/380 (4%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F  +   P ++ +A  + G    T VQ + + P L+ +D L  A+TGSGKT AF L 
Sbjct: 1   MAAFRELGLAPWLVEQA-RQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLP 59

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           +   L  +            L + PTRELA Q+  +   L    G+   V +GG+ +  +
Sbjct: 60  VLQVLSEDP------YGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQ 113

Query: 118 RRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGF---RDDIEFIL 173
             +L    H+V+ TPGRL DH       ++  LK +VLDEAD +L+ G      D+E IL
Sbjct: 114 ALELSRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFIADLEVIL 173

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           ++ P +R+ L+FSAT++  +  L             ASE R   ++D R +LV  + +D 
Sbjct: 174 EAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDA 233

Query: 234 AIVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V+        H   + I+F  T         +L +  F  VAL   + Q++R  AL  
Sbjct: 234 YLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPSVALHSMMKQRQRFAALAK 293

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            +    ++ IATDVAARG+D+P +++VI+      P+  +HR GRT RAGR G+S+ ++ 
Sbjct: 294 FKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVT 353

Query: 350 QNMQRRAERLFREANVSVVW 369
           Q        +  E  + +  
Sbjct: 354 QYDIHLVHAIEEEIKLKLQE 373


>gi|124512574|ref|XP_001349420.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|23499189|emb|CAD51269.1| RNA helicase, putative [Plasmodium falciparum 3D7]
 gi|156072132|gb|ABU45417.1| DEAD-box helicase 11 [Plasmodium falciparum]
          Length = 941

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 185/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR------ 68
           + +  Y   T +Q+  LN  +   D++  AQTGSGKT  + L + + +L  +        
Sbjct: 377 IKKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKTAGYLLPIINHMLINDPPKHTYYE 436

Query: 69  ---------FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                    F+    P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 437 QNNKTSNYYFNRVCLPICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLS 496

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--------- 170
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I          
Sbjct: 497 NLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIVNDYDMP 556

Query: 171 ---------------FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                              +   KR+ +MFSAT    I  LAK Y      + +      
Sbjct: 557 GNDNDVHTSENKVEYKKYCNDIIKRQTIMFSATFRKEIQVLAKEYLCKYTFLLVGKVGST 616

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V V   ++ N ++N+L  +     I+F  T+       + L+      V + 
Sbjct: 617 NEYIKQNLVFVEEENKCNYLLNLLAENNNGLTILFVETKRKADIIERFLSNQKLNAVCIH 676

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 677 GDKSQDERERALKLFKRGIKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 736

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   + ++ +   + L     E N  +  
Sbjct: 737 GRAGNIGIATSFVNEDNKNIFKDLLATLEECNQQIPR 773


>gi|308802996|ref|XP_003078811.1| putative RNA helicase (ISS) [Ostreococcus tauri]
 gi|116057264|emb|CAL51691.1| putative RNA helicase (ISS) [Ostreococcus tauri]
          Length = 693

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 131/444 (29%), Positives = 212/444 (47%), Gaps = 20/444 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +  F+ +   +   L ++GY  L  +Q   L   L  +DV+  A+TG GKT+AF L +  
Sbjct: 82  LDNFKGLTDPVKTTLRKKGYDALFQIQAETLEIALGGRDVVGRARTGCGKTLAFVLPIIE 141

Query: 61  TL-----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            +     +  N R      P+ + +APTRELA QV  + +W+    G       GG    
Sbjct: 142 LMAKMSPMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSYGFKSLCVYGGAPYR 201

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L++G  IV+GTPGR+ DH+  K L ++ LK  VLDEADEML++GF DD+E IL S
Sbjct: 202 EQEMGLRSGVDIVIGTPGRMKDHLERKTLMMTDLKFRVLDEADEMLNMGFVDDVETILKS 261

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-- 233
           S   + +L  +   S       +  + +   V++  + +Q +    + +L+     D   
Sbjct: 262 SGDVQTLLFSATLPSWVKDISKRFLKPNYSTVDLVGDEKQKASGAVQHMLLPCQWSDRVD 321

Query: 234 --AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMM 290
               V   +  G    IVFC T+         L + + +   AL G++SQ +R   L + 
Sbjct: 322 LVCDVIRSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQSQREVVLSLF 381

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R+ + +V +ATDVAARG+D+  +ELVI  E   + E  +HRSGRTGRAG  G+SV +   
Sbjct: 382 REDKFQVLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTP 441

Query: 351 NMQRRAERLFREANVSVV----WEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEK 401
             +     + R+     +     +PA   +A  +   ++I +       LF+D  +   +
Sbjct: 442 RNEWAVPNIERKGGFKFIRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAKLFMDVARDLLE 501

Query: 402 KMVDVLLAKHDP-EKIAAGFLRIH 424
                     DP E +A    ++ 
Sbjct: 502 GEDSDSEEGRDPVEVLAMAIAKLA 525


>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
 gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
           100-23]
          Length = 457

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 196/461 (42%), Gaps = 15/461 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   +  A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + 
Sbjct: 4   KKFADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S +  E+          A+   P+RELA Q+     +L         +     G    H+
Sbjct: 64  SKINPEDQTV------QAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    
Sbjct: 118 VDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHF 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +M++FSATI   +    K Y ++ V   I +E   + D+D   +     DR+  I 
Sbjct: 178 PDDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIY 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+      T+ L     +V  + G L  + R   ++ +RD   +
Sbjct: 238 RLLTLGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQ 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR G KG ++ +         
Sbjct: 298 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLI 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            +L  E  V  V +   + + +   D  R        + +        K     +     
Sbjct: 358 AKLE-ERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYK 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++I        +                 R +     R  +
Sbjct: 417 KRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR 457


>gi|325189223|emb|CCA23746.1| DEAD box helicase putative [Albugo laibachii Nc14]
          Length = 809

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/420 (27%), Positives = 190/420 (45%), Gaps = 56/420 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + +A+ E  +   + +Q   +   L ++D++  A+TGSGKT AF + + + L    
Sbjct: 357 LPEALFKAIQEMRFERPSPIQMQAIPIGLAKRDIIGIAETGSGKTAAFLIPIIAYLYHLP 416

Query: 67  D---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT---------GVVVAVCIGGVSV 114
                 +    PLAL +APTRELA+Q+ +E   L   T          +     +GG S+
Sbjct: 417 AVMLERTGEQGPLALIMAPTRELALQIEQEAIKLCKHTQVGVVGSQNRIRTLSVVGGQSI 476

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----- 169
             +   L+ G  I++GTPGRL D +    L ++    VVLDEAD M+D+GF   +     
Sbjct: 477 EDQAFKLRQGVDIIIGTPGRLMDCMESHYLVLNQCNYVVLDEADRMIDMGFEPQVVAVLD 536

Query: 170 -------------------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
                                      + R  +MFSAT+   +  LAK Y +    + I 
Sbjct: 537 NMGSLLKSENEEEMEKQLERANNAQEFRYRVTMMFSATMPTEVERLAKTYLRHPAIIKIG 596

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYH-----------------GAKNAIVFCST 253
            E+   +    + V+   S +    +  L +                    +  +VF + 
Sbjct: 597 DEDSGKNKRIEQRVVFLNSGKKKLRLQHLLHETLSSSGQVRISRKEKVVDGQKVMVFVNI 656

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K LA+  F+   L G  SQ++R  +L+  R+G   V +ATDVA RG+D+PD+
Sbjct: 657 KKECDVLGKYLAQEGFRTTILHGGKSQEQREESLRGFREGFCDVLVATDVAGRGLDIPDV 716

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWE 370
             V++ +L S  EN  HR GRTGRAG++G+++  +    +      ++     N+ V  E
Sbjct: 717 THVVNYDLPSKIENYCHRIGRTGRAGKEGVAISFLTNEDEEIMYDLKQYLISTNMPVPQE 776


>gi|309364627|emb|CAP24933.2| CBR-VBH-1 protein [Caenorhabditis briggsae AF16]
          Length = 692

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/403 (25%), Positives = 171/403 (42%), Gaps = 38/403 (9%)

Query: 5   ENIP-----QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           EN         + E ++  GY   T VQ+  +   L  +D++  AQTGSGKT AF L + 
Sbjct: 163 ENFSDAGFGPAVMENVTRSGYTKPTPVQKHSIPTLLFNRDLMSCAQTGSGKTAAFLLPII 222

Query: 60  STLLAENDRF------------------------SPASAPLALAIAPTRELAVQVGRELE 95
             ++A                                  P AL ++PTRELA+Q+ +E  
Sbjct: 223 QHIMAGGPDMIKTVSSATNIFGFKVILQPTFNNGRRTYYPSALVLSPTRELAIQIHKEAA 282

Query: 96  WLYAKTGVVVAVCIG-GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVL 154
               KT +  A+  G   +   +   L++G HI++ TPGRL D I    + +S  + +VL
Sbjct: 283 KFSYKTNLQTAILYGGRENYRDQVNRLRSGVHILIATPGRLIDIIEQGFIGLSGCRYLVL 342

Query: 155 DEADEMLDLGFRDDIEF-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           DEAD MLD+GF   I       +   + +   M   +      +       +        
Sbjct: 343 DEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQLLAKDFLKENYVFLAVG 402

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
              +   +       +  +  R N +  ++        +VF  T+   +     L     
Sbjct: 403 RVGSTSENIEQRLLWVNEMEKRQNLMDILMNEDATNLVLVFVETKRGANELAYFLNRQQI 462

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           + V++ G+L Q ER   L+M R G+  + +AT VAARG+D+P++  V++ +L  + +  +
Sbjct: 463 RSVSIHGDLKQIERERNLEMFRSGQFPILVATAVAARGLDIPNVRHVVNYDLPGDSDEYV 522

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVW 369
           HR GRTGR G  G++        +   R  + L  EAN  V  
Sbjct: 523 HRIGRTGRCGNLGIATSFFNDKNRGIGRDLKTLIMEANQEVPE 565


>gi|86133600|ref|ZP_01052182.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
 gi|85820463|gb|EAQ41610.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
          Length = 373

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 188/376 (50%), Gaps = 13/376 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F  +   +   +++ E G    T +QE  +   L+   D +  AQTG+GKT AFGL 
Sbjct: 1   MSTFAGLGIRKDYIKSIKEIGITKPTDIQEKAIPVLLKSPTDFIGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVH 115
           +   + A +D         AL ++PTREL  Q+ ++L          + +    GG  + 
Sbjct: 61  VLHHIDANSDHI------QALILSPTRELVQQIKKQLFKFTKYVDDRIFLEAVFGGEKID 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+  +L+   HIV+ TPGRL D I    ++ISH+K V+LDEADEML +GF+ D+  IL  
Sbjct: 115 RQMNNLKRTTHIVIATPGRLIDLIERGAVDISHVKTVILDEADEMLSMGFKQDLNRILKF 174

Query: 176 SP--KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +    ++  L  +         +      +A R+ I      +++I ++     L ++  
Sbjct: 175 TTKSDRKTWLFSATMPDEIKRIVKTYMDANAPRIEINKNTLVNANIRHQFAKTTLKEKVA 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            IV  L    A+  I+FC T+A      K L +  F   AL G++ Q+ER   ++  ++ 
Sbjct: 235 DIVTFLEKRQAQRGIIFCRTKAGAQNLAKQLVDEGFSAAALEGDMQQKERDKVMRAFKNE 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             +  I+TDV+ARGID+ +LE VIH +L    E   HRSGRT RAG+ G S+  I  +  
Sbjct: 295 SLQYLISTDVSARGIDVRELEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPSEL 354

Query: 354 RRAERLFREANVSVVW 369
            +  +L +E N+    
Sbjct: 355 EKIHQLQKELNIKFTE 370


>gi|293331927|ref|NP_001170610.1| hypothetical protein LOC100384654 [Zea mays]
 gi|238006354|gb|ACR34212.1| unknown [Zea mays]
          Length = 427

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 177/369 (47%), Gaps = 10/369 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVA 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSKYLPELRVAVFYGGVHIKNHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L + +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +  RGID+  + +V++ ++  + +  LHR GR GR G KG+++  +  +      ++   
Sbjct: 348 LVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSDSDVLNQVQER 407

Query: 363 ANVSVVWEP 371
             V +   P
Sbjct: 408 FEVDIKELP 416


>gi|145345534|ref|XP_001417262.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577489|gb|ABO95555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 654

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 207/438 (47%), Gaps = 20/438 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           + + +   L ++G+  L ++Q   L   L  KDV+  A+TG GKT+AF L +   +    
Sbjct: 90  LSEPVKATLRKKGFDALFAIQAETLEIALSGKDVVGRARTGCGKTLAFVLPIVEEMAKIS 149

Query: 63  -LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +  N R      P+ + +APTRELA QV  + +W+    G       GG     +   L
Sbjct: 150 PMPANGRRVQGRRPMCVVLAPTRELAKQVFADFDWIGNSFGFKSVCVYGGTPYREQEMGL 209

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +V+GTPGR+ DH+  K L +  LK  VLDEADEML++GF DD+E IL SS   + 
Sbjct: 210 RGGCDVVIGTPGRMKDHLERKTLMMDKLKFRVLDEADEMLNMGFVDDVELILKSSGDVQT 269

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----AIVN 237
           +L  +           +  + D   V++  + +Q +    + +L+     D       V 
Sbjct: 270 LLFSATLPPWVKDIAKRFLKPDYATVDLVGDQKQKASGAVQHMLLPCQWSDRVDLVCDVI 329

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRAR 296
             +  G    IVFC T+         L + + +   AL G++SQ +R   L   R+ + +
Sbjct: 330 RSKAPGGGRVIVFCDTKRDCGELCDNLQKEIPKGAKALHGDVSQGQREVVLAGFREDKFQ 389

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  +ELVI  E   + E  +HRSGRTGRAG  G+SV +     +   
Sbjct: 390 VLVATDVAARGLDITGVELVIQCEPPKDAETYIHRSGRTGRAGATGISVTLCTPRSEWAV 449

Query: 357 ERLFREANVSVV----WEPAPSVEAIRERDAQRILQ-----DPLFLDSIQGDEKKMVDVL 407
             + R+     V     +PA   +A  +   ++I +       LF+D  +   +      
Sbjct: 450 PNIERKGGFKFVRIGPPQPAEMAKAAGKIAGEQIRKVHKGAAKLFMDVARDLLEGEDSDS 509

Query: 408 LAKHDP-EKIAAGFLRIH 424
               DP E +A    ++ 
Sbjct: 510 EEGRDPVEVLAMAIAKLA 527


>gi|238755823|ref|ZP_04617154.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
 gi|238705981|gb|EEP98367.1| ATP-independent RNA helicase dbpA [Yersinia ruckeri ATCC 29473]
          Length = 434

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/384 (34%), Positives = 196/384 (51%), Gaps = 12/384 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L+ +DV   A+TGSGKT AFG+ L   +              AL + P
Sbjct: 1   MTPVQAAALPAILKGQDVRAKAKTGSGKTAAFGIGLLDKIAVGE------FVTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +EL  L   T  + +    GG  +  +   L +  HIVVGTPGR+ +H+R 
Sbjct: 55  TRELADQVSKELRRLARFTQNIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGRIQEHLRK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           + L +  LK +VLDEAD MLD+GF D I  ++  +P +R+ L+FSAT    I  ++   Q
Sbjct: 115 RTLVLDDLKVLVLDEADRMLDMGFTDAINDVISYTPPQRQTLLFSATYPAGIERISAKVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           ++ +         +   I           R   ++++L ++   + +VFC+T+       
Sbjct: 175 REPL-NVEVESEGEDPAIQQVFFETTREKRLPLLISVLSHYQPASCVVFCNTKKDCQSVY 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L      V+AL G+L Q++R   L    +   RV +ATDVAARG+D+ DLELV++ EL
Sbjct: 234 DTLESRGISVLALHGDLEQRDRDQVLVRFSNRSCRVLVATDVAARGLDIKDLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRTGRAG  G++V +   +   RA  +     + V W PA  V     R
Sbjct: 294 AFDPEVHVHRIGRTGRAGMSGLAVSLCTPSEMGRAHAIEDYLQIKVKWTPAEQV----SR 349

Query: 382 DAQRILQDPLFLDSIQGDEKKMVD 405
               IL+  +    I G  K  + 
Sbjct: 350 STNAILEPEMVTLCIDGGRKAKIR 373



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 22/67 (32%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLR 522
                   +  G K K     ++  L   +G+    +G I + P   +V +         
Sbjct: 356 EPEMVTLCIDGGRKAKIRPGDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRAI 415

Query: 523 RTVKLDK 529
           + ++  K
Sbjct: 416 QQLQQGK 422


>gi|313763161|gb|EFS34525.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
 gi|313773199|gb|EFS39165.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
 gi|313793334|gb|EFS41392.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
 gi|313801023|gb|EFS42291.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
 gi|313808763|gb|EFS47217.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
 gi|313810443|gb|EFS48157.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
 gi|313816500|gb|EFS54214.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
 gi|313817944|gb|EFS55658.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
 gi|313819855|gb|EFS57569.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
 gi|313823346|gb|EFS61060.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
 gi|313824820|gb|EFS62534.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
 gi|313828335|gb|EFS66049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
 gi|313830060|gb|EFS67774.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
 gi|313832667|gb|EFS70381.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
 gi|313838024|gb|EFS75738.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
 gi|314914409|gb|EFS78240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
 gi|314917732|gb|EFS81563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
 gi|314919541|gb|EFS83372.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
 gi|314925849|gb|EFS89680.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
 gi|314930132|gb|EFS93963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
 gi|314957125|gb|EFT01229.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
 gi|314957731|gb|EFT01834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
 gi|314960793|gb|EFT04894.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
 gi|314963467|gb|EFT07567.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
 gi|314969950|gb|EFT14048.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
 gi|314973091|gb|EFT17187.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
 gi|314975587|gb|EFT19682.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
 gi|314979836|gb|EFT23930.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
 gi|314984871|gb|EFT28963.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
 gi|314988743|gb|EFT32834.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
 gi|315077196|gb|EFT49261.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
 gi|315083323|gb|EFT55299.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
 gi|315086904|gb|EFT58880.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
 gi|315089995|gb|EFT61971.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
 gi|315096683|gb|EFT68659.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
 gi|315097910|gb|EFT69886.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
 gi|315100675|gb|EFT72651.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
 gi|315109155|gb|EFT81131.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
 gi|327325098|gb|EGE66904.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA3]
 gi|327325275|gb|EGE67080.1| ATP-dependent RNA helicase [Propionibacterium acnes HL096PA2]
 gi|327444077|gb|EGE90731.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
 gi|327449297|gb|EGE95951.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
 gi|327449475|gb|EGE96129.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
 gi|327451498|gb|EGE98152.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
 gi|327451529|gb|EGE98183.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
 gi|327451811|gb|EGE98465.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
 gi|328752028|gb|EGF65644.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
 gi|328755440|gb|EGF69056.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
 gi|328756358|gb|EGF69974.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
 gi|328761308|gb|EGF74835.1| ATP-dependent RNA helicase [Propionibacterium acnes HL099PA1]
          Length = 491

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|227518643|ref|ZP_03948692.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227553173|ref|ZP_03983222.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|227073900|gb|EEI11863.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
 gi|227177699|gb|EEI58671.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
 gi|315575567|gb|EFU87758.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
 gi|315579991|gb|EFU92182.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
          Length = 452

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 202/466 (43%), Gaps = 26/466 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+     I EAL+E+G+   T VQE ++    + K V+  +QTGSGKT  F L L  
Sbjct: 7   FKQFQ-FQPFINEALAEKGFEEPTEVQEKLIPIIKKGKSVIGQSQTGSGKTHTFLLPLMD 65

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +    D          +  AP+RELA Q+ +E + L   +   + V           + 
Sbjct: 66  KVKPTIDEV------QIVITAPSRELANQIYQEAQQLARFSQPEIRVSNFVGGTDKQRQL 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      H+V+GTPGR+ D +  + L +    A V+DEAD  LD+GF  +++ I    P
Sbjct: 120 NKLKHQQPHVVIGTPGRILDMMNEQALKVHTAFAFVVDEADMTLDMGFLAEVDQIAGRLP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ V  +I  +      ID   +     + +  I  
Sbjct: 180 EKLQMLVFSATIPEKLRPFLKKYLENPVIEHIKPKAVISETIDNWLISTKGKNSNKIIYQ 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T+  V   T  L +   +V  + G+++ +ER   ++ +++   + 
Sbjct: 240 LLTIGHPYLAIVFANTKQRVDEITDYLKDQGLKVAKIHGDITPRERKRVMRQVQNLDYQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+    +  +HR GRTGR G  G ++ +          
Sbjct: 300 VVATDLAARGIDIEGVSHVINAEVPHELDFFIHRVGRTGRNGLNGTAITLYSPADDEAIT 359

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
           ++  +  VS   +   + E +   D  R               +   +    + DP  I 
Sbjct: 360 QIE-QLGVSFKPKEIKNGEIVETYDRNR---------------RTKREKSREELDPTLIG 403

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I      S + + + + R            
Sbjct: 404 LVKKKKKKIKPGYKKKINWAIEDSNKKKRKIERRQKDRSARKAKKN 449


>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
 gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
          Length = 1466

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/489 (24%), Positives = 209/489 (42%), Gaps = 38/489 (7%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 305 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 364

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 365 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQEN 421

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 422 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 481

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  +  L +      VR+ + ++ +    +              R   +
Sbjct: 482 SRQTMLFSATMTNNVDKLIRVGLSRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYL 541

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + + +       IVF  ++    R   +      +V  L G +SQ++R  +++  RDG+ 
Sbjct: 542 IVLCKNIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKV 601

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   +    LHR GRT RAGR G +  +  +  ++ 
Sbjct: 602 SFLLATDVASRGLDIKGVETVINYEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKV 661

Query: 356 AERLF---REANVSVVWEPAPSVEA-----------------IRERDAQRILQDPLF--- 392
            +      R     +V     + EA                 +RE   ++ L        
Sbjct: 662 VKAAVKTGRAQGAKIVSRLIETAEADKWAAKVEEMQEEVQEILREEKEEKQLAQAEMEVT 721

Query: 393 ----LDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
               L + + +          + + EK+ A   +     L  P +     L     +  D
Sbjct: 722 RGSNLLNHEKEIMSRPKRTWFESEKEKLQAK--QRSLEELNGPSKKKKGKLSGKDKKKLD 779

Query: 449 DSRAFKVGG 457
           D+R  + G 
Sbjct: 780 DNRERREGK 788


>gi|303320765|ref|XP_003070377.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240110073|gb|EER28232.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 827

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 392 SGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 451

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +  +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   
Sbjct: 452 LPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFS 511

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 512 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 571

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                         +     +    +  + +                             
Sbjct: 572 EKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 631

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + + +  +  V 
Sbjct: 632 VDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVT 691

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+ D+ LV++  +++N E+  HR G
Sbjct: 692 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRIG 751

Query: 334 RTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 752 RTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQSK 802


>gi|123413907|ref|XP_001304373.1| eukaryotic translation initiation factor [Trichomonas vaginalis G3]
 gi|121885820|gb|EAX91443.1| eukaryotic translation initiation factor, putative [Trichomonas
           vaginalis G3]
          Length = 410

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 190/379 (50%), Gaps = 8/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   +   G+   + +Q   + P  ++++VL  AQ+G+GKT AF + + + +   
Sbjct: 35  DLDENLLRGIYAYGFKQPSDIQALAIKPICQKRNVLAQAQSGTGKTGAFSIGVLNRID-- 92

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLY-AKTGVVVAVCIGGVSVHRERRDLQNG 124
               +      AL +APTREL  Q+   ++ +      + + V  GG+SV  ++R  Q  
Sbjct: 93  ----TSLVETQALLLAPTRELVDQIYIFIKQISEKMPNITIEVFKGGLSVTEDQRKAQEK 148

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             + + TPGR  D I    L I  L+  VLDEADEML  GF++ ++ I      + +  +
Sbjct: 149 PMVAICTPGRALDLISKGYLQIGQLQMFVLDEADEMLSEGFKETVDEICKYLDPEIQTCL 208

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
           FSATI  +  +   N   + V++ + +E      I      +   S++ + +++I     
Sbjct: 209 FSATIPWSTISKIPNLFDNPVKILVKAEKLTLEGIKQFYVNVGETSNKLSVLLDIYGALN 268

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +++A+V      L  + F V A+   L+Q ER   ++  R   +RV I+TD+
Sbjct: 269 ITKAVIFANSKATVDFLKSELEANKFTVSAIHSNLTQVERDTIMKNFRINVSRVLISTDL 328

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ EL +  E  LHR GR+GR GRKG+++ +  +   R+   L    
Sbjct: 329 LARGIDVQQITLVINFELPTTREKYLHRIGRSGRYGRKGVAINICDEGEMRKLRDLEHFY 388

Query: 364 NVSVVWEPAPSVEAIRERD 382
           +  +   PA   + + + +
Sbjct: 389 STQIAELPADINDVVNDAN 407


>gi|302682610|ref|XP_003030986.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
 gi|300104678|gb|EFI96083.1| hypothetical protein SCHCODRAFT_77182 [Schizophyllum commune H4-8]
          Length = 775

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/403 (26%), Positives = 179/403 (44%), Gaps = 13/403 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K+F ++P  Q     L +  ++N+T VQ   L   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 51  LKLFSDLPISQATKRGLKKAAFINMTDVQAKSLPVSLKGKDVLGAARTGSGKTLAFLIPV 110

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++ PA    AL I+PTRELAVQ+   L  +         + IGG ++  ER
Sbjct: 111 LEILY--RRKWGPADGLGALIISPTRELAVQIFEVLRSIGPFHSFSAGLVIGGKNLKDER 168

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G    +L+ +VLDEAD +LD+GF   +  +L   PK
Sbjct: 169 DRLVRMNILVATPGRLLQHMDQTYGFECDNLQVLVLDEADRILDMGFAKTLSALLGHLPK 228

Query: 179 KRRMLMFSATISPAITTL-----AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
            R+ L+FSAT + +++ L                  +       +++    +  L  + +
Sbjct: 229 SRQTLLFSATQTDSVSDLARLSLTDPAFIATKEAEESHTATTPKNLEQHYAICTLDQKLD 288

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMR 291
            + + ++ H     +VF S+   V    +   +    V  L     Q++ +         
Sbjct: 289 LLWSFIKTHLQSKTLVFLSSCKQVRFVYETFCKMQPGVSLLHLHGKQKQMTRLAMYDRFT 348

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V  ATD+AARG+D P ++ V+  +   + E  +HR GRT R   KG  +  +  +
Sbjct: 349 KMSHVVLFATDIAARGLDFPAVDWVLQLDAPEDVETYIHRVGRTARYESKGKGLLFLMPS 408

Query: 352 MQRRAERLFREANVSVVWEPA-PSVEAIRERDAQRI-LQDPLF 392
            +      F + ++ +      PS     E   Q++  Q+P  
Sbjct: 409 EEEGMLAAFAKRDIDIKKIKIRPSKTQNIENQLQKLAFQEPEI 451


>gi|294893294|ref|XP_002774400.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239879793|gb|EER06216.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 535

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/376 (27%), Positives = 177/376 (47%), Gaps = 17/376 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE  N P  +  ++   G    +++Q          +D++  A+TGSGKT+A+ +  
Sbjct: 161 VTTFEESNFPDYLVGSI---GRGRPSAIQMQGWPVASSGRDLVGVAETGSGKTLAYLMPA 217

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+ +       P+AL + PTREL+ QV           GV +A   GG    ++ 
Sbjct: 218 IVHIAAQPE-VEQGDGPVALVLVPTRELSQQVVE------GDEGVKIACVYGGQPKRQQE 270

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R+L     ++V TPGRL D ++    N+  +  +V+DEADEML LGF   ++ I  +   
Sbjct: 271 RELWTAPELLVATPGRLIDFLQNGATNLKRVTYLVIDEADEMLALGFGRQLDSICSAIRP 330

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ LM+SAT    I  LA+ + ++             +    R   V    R    V  
Sbjct: 331 DRQTLMWSATWPREIQDLARKHCREMPVHINIGSQSLAACHQVRGEGVIGRSRLGVAVVW 390

Query: 239 L--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                +G   A++FC+T+  V + T++L    +  V +  +  Q ER       RDG  R
Sbjct: 391 NVLESNGEAKALIFCNTKREVDQLTQLLRSQGYNAVCIHSDKEQSEREWVFAQYRDGDVR 450

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +AT++  RG+D+ +++ VI+ ++  N E  +HR GRT RAG  G S+ +      R A
Sbjct: 451 LLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRTARAGAHGTSITLFTAQEGRHA 510

Query: 357 E---RLFREANVSVVW 369
           +    +  EA  ++  
Sbjct: 511 KDLVDILNEAGQNIPE 526


>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
 gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
           OS217]
          Length = 426

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 124/405 (30%), Positives = 199/405 (49%), Gaps = 7/405 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F    +   +   L E  Y   T +Q   +   L  KD+L  A TGSGKT AF L L 
Sbjct: 7   TTFAEFGLHNALLSRLVELDYQVPTPIQAQTIGSILAGKDLLAGANTGSGKTAAFALPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRE 117
             LL++  +    +   AL + PTRELA QV    +     +   + V    GGVSV+ +
Sbjct: 67  HALLSKPLKPLKGNGVRALVLVPTRELAKQVADSFKSYAVHSNGAIKVVAAFGGVSVNTQ 126

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ GA IVV TPGRL D +    L ++ +  +VLDEAD ML LGF D+I  IL   P
Sbjct: 127 MLALRGGADIVVATPGRLLDLLSSNALKLADVSTLVLDEADRMLSLGFTDEIGQILGLLP 186

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KK++ L+FSAT    +  L        + + +   N + S +  R + V    +   + +
Sbjct: 187 KKKQTLLFSATFPEEVRQLTDALLNSPLEIQLQ--NPESSTLVQRVMTVNREKKTALLAH 244

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  H  +  ++F   + S +   + LA+         G+ +Q  RS  L+  + G  +V
Sbjct: 245 LLNEHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQV 304

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ ++  +      
Sbjct: 305 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLLSHDEYHHFT 364

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + ++  + +  E     EA  E+  + +L+    +   +G  KK
Sbjct: 365 VIEKKNKIRLEREQVAGFEA-DEQMPEALLEQEKPMAKPEGTGKK 408


>gi|302791241|ref|XP_002977387.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
 gi|300154757|gb|EFJ21391.1| hypothetical protein SELMODRAFT_232961 [Selaginella moellendorffii]
          Length = 413

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 182/381 (47%), Gaps = 15/381 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS-APLA 77
           G+   + +Q       L  +D++  A TGSGKT+AFG+     +L    +    S     
Sbjct: 6   GFEKPSPIQAHSWPFLLDGRDLIGIAATGSGKTLAFGVPALVHILNHKKKEKKHSKGSRC 65

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           L ++PTRELA Q+   LE   A  GV V    GG S   +   L++G  IVV TPGRL D
Sbjct: 66  LVLSPTRELAQQIAAVLEEAGASCGVKVVCLYGGSSKGPQYSSLRSGCDIVVATPGRLQD 125

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +      +  +  +VLDEAD MLDLGF   +  I+   P++R+ +MFSAT   ++  LA
Sbjct: 126 FVDEGVCKLDQITYLVLDEADRMLDLGFEPAVRAIVSHIPQERQTIMFSATWPTSVQKLA 185

Query: 198 KNYQKDAVRV-----------NIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           + + +DA                 S N   + I       +   R   ++ +        
Sbjct: 186 QEFIQDASPELISFLQITVGSEDLSANHDVTQIVEVLDDKSRDRRLQELLRLYHKTKRNR 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   +    R    L +  + V  + G+ SQQ R+ AL   +DG   + IATDVAAR
Sbjct: 246 VLVFVLYKKEAVRVENFLQKQGWNVTGIHGDKSQQARNQALSAFKDGSHPLLIATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER---LFREA 363
           G+D+PD+E VI+       E+ +HR GRTGRAG+KG +        + RA     + REA
Sbjct: 306 GLDIPDVEFVINYSFPLTTEDYVHRIGRTGRAGKKGTAHTFFTTADKARAGELVNILREA 365

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
              V  E       +++++++
Sbjct: 366 RQIVPEELLKFGAHVKKKESK 386


>gi|124088187|ref|XP_001346998.1| RNA helicase [Paramecium tetraurelia strain d4-2]
 gi|145474579|ref|XP_001423312.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|50057387|emb|CAH03371.1| RNA helicase, putative [Paramecium tetraurelia]
 gi|124390372|emb|CAK55914.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1157

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 109/401 (27%), Positives = 190/401 (47%), Gaps = 16/401 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           +V+   + ++ ++N   +Q   +   +  +D +  A+TGSGKT+A+ L L   +L +   
Sbjct: 513 RVLNVLIEKKKFINPFPIQAQAVPCIMSGRDFIGIAETGSGKTLAYLLPLLRHVL-DQPA 571

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P+A+ +APTRELA Q+     W  +   + V  C+GG  +  +  DL+ G  IV
Sbjct: 572 LKDGDGPIAIIMAPTRELAHQIYVNCRWFTSILNLNVVCCVGGAGIAGQLSDLKRGTEIV 631

Query: 129 VGTPGRL---CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           V TPGR+        GK  N+  +  VV+DEAD M DLGF   I  I+ +    R+++MF
Sbjct: 632 VCTPGRMIDVLTTSNGKITNLRRVTYVVIDEADRMFDLGFEPQICKIIQNIRPDRQLVMF 691

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    +  LAK   +  +   +    +   +I+     +  SD+   ++ + +    K
Sbjct: 692 SATFPKNVEQLAKRVLRKPIECIVGGRGQAGGNIEQIIEFMDESDKLYKLLLLFQEWYTK 751

Query: 246 NAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            +I +F   +       K L ++ ++   L G +  Q+R   +   + G   + +AT V 
Sbjct: 752 GSILIFVEKQTEADDLFKELLKYGYKSFVLHGGMDPQDREFTIHDFKKGIRTIMVATSVL 811

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  + LVI+    ++ E+ +HR GRTGRAG+KG ++       +  A  L     
Sbjct: 812 ARGLDIKHICLVINFSCPNHMEDYIHRIGRTGRAGQKGTAITFFTPQDEHLANDLVYLLE 871

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            S    P    E ++E           F++ ++  E K+  
Sbjct: 872 KSEQQLP----EKLKEYQKS-------FMEKVKAGEAKIYR 901


>gi|319948221|ref|ZP_08022378.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
 gi|319438115|gb|EFV93078.1| DEAD/DEAH box helicase domain protein [Dietzia cinnamea P4]
          Length = 533

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 130/373 (34%), Positives = 178/373 (47%), Gaps = 5/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + + L+  G    T +Q A L   L  +DVL   +TGSGKT AF L L +
Sbjct: 4   SFADLGVPSPLLDVLNGAGISTPTPIQSATLPDALSGRDVLGRGRTGSGKTYAFCLPLVA 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   R +  +AP  L +APTRELA Q+   L  L    G+   V  GGVS  R+   
Sbjct: 64  RLAASGGRRTR-NAPRGLILAPTRELARQIDETLAPLANALGMKTTVIFGGVSQGRQVDA 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  IVV  PGRL D +  K   +  ++  VLDEAD M DLGF   +  IL ++P   
Sbjct: 123 LNRGVDIVVACPGRLEDLMGQKHCRMDAIEISVLDEADHMADLGFLPGVTRILSATPADA 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L   +  D V  ++   +       +    V   DR  A+ ++  
Sbjct: 183 QRLLFSATLDSGVQKLVTRFLTDPVDHSVDDGSATPGPTAHHVFHVDADDRVRALADLAG 242

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H     ++F  T+    R  K L       V L G LSQ  R   L     G A V +A
Sbjct: 243 AH--PRTVMFTRTKHGAKRLAKQLTGRGVASVDLHGNLSQNARVRNLDAFSSGEATVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGI + D+ LV+HA+  +  +  +HRSGRT RAG  G  V V   +  R    L 
Sbjct: 301 TDIAARGIHVDDVGLVVHADPPAEHKAYVHRSGRTARAGAIGTVVTVATADQVREVRSLL 360

Query: 361 REANVSVVWEPAP 373
           R A V+      P
Sbjct: 361 RAAGVTAGEIELP 373


>gi|21223065|ref|NP_628844.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|7321275|emb|CAB82053.1| putative DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 473

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 119/373 (31%), Positives = 184/373 (49%), Gaps = 7/373 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 47  FADLDMPAELLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L
Sbjct: 107 ---TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASAL 163

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 164 RGGVEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQ 223

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 224 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTEIA 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T  L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 282 ARDGRVLMFLDTKHAVDRLTDHLLNSGVRAAALHGGKSQSQRTRTLAQFKTGHVTVLVAT 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  N +R   RL  
Sbjct: 342 NVAARGIHVDNLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVTPNQRRAMTRLMT 401

Query: 362 EANVSVVWEPAPS 374
            A +     P  S
Sbjct: 402 TAGIVPQTTPVRS 414


>gi|209762794|gb|ACI79709.1| ATP-dependent RNA helicase [Escherichia coli]
          Length = 444

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|330007678|ref|ZP_08306017.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
 gi|328535359|gb|EGF61841.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. MS 92-3]
          Length = 421

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/404 (30%), Positives = 189/404 (46%), Gaps = 9/404 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAI 193
             +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT       
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIK 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               +  ++        S   +     +      +  +   +VN+L+   A  AIVF   
Sbjct: 198 DFAERLLEEPVEVSANPSTRERKKIHQWYYRADDIEHKTKLLVNLLQQPEATRAIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD+
Sbjct: 258 RERVHELANWLREAGINTCWLEGEMVQAKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSVVW 369
             V + ++    +  LHR GRTGRAG+KG ++ ++  +           +       V+ 
Sbjct: 318 SHVFNFDMPRTADTYLHRIGRTGRAGKKGTAISLVEAHDHLLLGKIGRYIEEPLKARVID 377

Query: 370 EPAPSVEAIRERDAQRILQDPL-FLDSIQGDEKKMVDVLLAKHD 412
           E  P+  A  E+   +  +  L      + DEK+   V     D
Sbjct: 378 ELRPTTRAPSEKLTGKPSKKVLAKRAQKKKDEKEKPRVKKRHRD 421


>gi|171778129|ref|ZP_02919386.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283111|gb|EDT48535.1| hypothetical protein STRINF_00221 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 447

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 111/467 (23%), Positives = 198/467 (42%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I  AL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIRVALAELKFKNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDET 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           +D          +  AP+REL  Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  SDNV------QVVITAPSRELVTQIYQATKQIADKSETEIRVANYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIASTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +   +       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGGIPPRERKRTMNQTKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLNGIAITLYQPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --LGIKFVP-------------KMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----DEKRKRERRAANRAKGRAERKARKQTF 447


>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 789

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 116/455 (25%), Positives = 205/455 (45%), Gaps = 16/455 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   +   +  +GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 29  FESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLER 88

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +        AL ++PTR+LA+Q  +  + L   T +  ++ +GG S+  +  +L
Sbjct: 89  LKQHVSQ----GGARALILSPTRDLALQTLKFTKELGRFTDLRASLLVGGDSMESQFEEL 144

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                I++ TPGRL  H+     +++  ++ VV DEAD +  +GF + +  IL    + R
Sbjct: 145 AQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENR 204

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+   AK   +D   V +  + +   D+      +   ++  A++ ++R
Sbjct: 205 QTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTVFFTLRQEEKYAALLYLVR 264

Query: 241 YHG--AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            H    +  ++F ST+  V     +  E   +     G++ Q  R   +   R  +  + 
Sbjct: 265 EHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRAQKTMLL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TDVAARGID+P L+ VI+ +    P+  +HR GR  RAGR G +   +          
Sbjct: 325 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLD 384

Query: 359 LFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           L     +S     AP+ E + +   R   +I +     ++I G   + V  L++    E 
Sbjct: 385 L--HLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGRFPQTVLDLVSDRVREV 442

Query: 416 I--AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           I  +A    + +    A    T    +  ++  R 
Sbjct: 443 IDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRR 477


>gi|152976718|ref|YP_001376235.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025470|gb|ABS23240.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 206/426 (48%), Gaps = 14/426 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   N    + +A+ E  +   T +Q+ I     +   ++  +QTGSGKT A+ L  
Sbjct: 3   IQTFTQYNFQPFLIDAVRELRFTEPTEIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            + +  + +          +  APTRELA Q+ +E+    ++   +  +     IGG   
Sbjct: 63  INQIDPKREEV------QLVITAPTRELAQQIYQEIIKLTKFCTEEQMITARCLIGGTDK 116

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R    L+   HIVVGTPGR+ D I  + L +   + +++DEAD MLD+GF  D++ +  
Sbjct: 117 QRSIEKLKKQPHIVVGTPGRIKDLIEEQALFVHTAETIIVDEADLMLDMGFIQDVDKVAA 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   
Sbjct: 177 RMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIEI 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L       AIVF +T+         L E   +V  + G+LS ++R   ++ +RD  
Sbjct: 237 VKNMLLQFQPYLAIVFTNTKKMAEEVANGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATD+AARGID+  +  VI+ E+ S+ +  +HR GRT RAG  G++V +     + 
Sbjct: 297 FQYIVATDLAARGIDIEGISHVINYEIPSDLDFFVHRVGRTARAGYSGIAVTIYDARDEE 356

Query: 355 RAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
             + L ++ N++       + E   + ER+ ++  + P     I   +       +    
Sbjct: 357 AIDSLEKQRNITFKHVELRNGEWIDLGERNRRQSRKKPNNELDIMATKVVKKPKKVKPGY 416

Query: 413 PEKIAA 418
            +K+AA
Sbjct: 417 KKKLAA 422


>gi|320033151|gb|EFW15100.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Coccidioides
           posadasii str. Silveira]
          Length = 820

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 385 SGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 444

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +  +  P A+ +APTRELA Q+  E        G  V   +GG S+  +   
Sbjct: 445 LPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARKFCNPLGFNVVSIVGGHSLEEQSFS 504

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 505 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 564

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                         +     +    +  + +                             
Sbjct: 565 EKPDTEEAEDARAMSQHLGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 624

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + + +  +  V 
Sbjct: 625 VDTVEQRVEFISGEDKRKKRLADILASGEFRPPIIVFVNIKRNCDAVARDIKQMGYSSVT 684

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+ D+ LV++  +++N E+  HR G
Sbjct: 685 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVSDVSLVVNFNMATNIESYTHRIG 744

Query: 334 RTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 745 RTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRVPEELRKHEAAQSK 795


>gi|314986130|gb|EFT30222.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
          Length = 491

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 191/366 (52%), Gaps = 5/366 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RLFR+A   
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLFRQAGGK 381

Query: 367 VVWEPA 372
               P 
Sbjct: 382 PGEAPV 387


>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 1070

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 175/371 (47%), Gaps = 6/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + + +A+  +G+   T +Q   +   L   DV+  A+TGSGKT AF + +   L   
Sbjct: 263 ELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQKLGEH 322

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + +        A+ ++PTRELA+Q  + ++     + +   + +GG S+  +  +L    
Sbjct: 323 SIKV----GARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAELARNP 378

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL  H++  G+ +S ++ +V DEAD + ++GF+  +  I+      R+ L+F
Sbjct: 379 DIIVATPGRLVHHLQEVGMGLSTVQYIVFDEADRLFEMGFQQQLNDIVSKLSDNRQTLLF 438

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA- 244
           SAT+   +    +    + + V + SE +   ++      +   ++   ++ +L+     
Sbjct: 439 SATLPSMLVDFVRAGLTNPILVRLDSETKISENLALSFYTIRHDEKLAVLLYLLKEVIED 498

Query: 245 -KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F +T+  V      L +       + G L    R   L   R     V I TD+
Sbjct: 499 KQPTIIFTATKYHVEYLQIFLKQAKIDSTIIHGYLDPVARKINLAKFRSNNVSVMIVTDI 558

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L+ VI+ +     +  +HR GR  RAGRKG +  ++  +       L    
Sbjct: 559 AARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGRKGTAYSLVSPDEIPYMIDLHLYL 618

Query: 364 NVSVVWEPAPS 374
              ++ +  P+
Sbjct: 619 ARKIINKAEPA 629


>gi|83816639|ref|YP_444201.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
 gi|83758033|gb|ABC46146.1| ATP-dependent RNA helicase [Salinibacter ruber DSM 13855]
          Length = 478

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 132/441 (29%), Positives = 229/441 (51%), Gaps = 18/441 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   + +A+   G+  L  VQ   +   L  +D++V +QTGSGKT AF L L   +  
Sbjct: 46  DELSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNP 105

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV----AVCIGGVSVHRERRD 120
           + +          L + PTRELA Q+  E E +   T         +  GGV    +   
Sbjct: 106 DKEEQ------QVLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDG 159

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA +V+GTPGR+ DHI+    + S L+ +VLDEADEML +GF  D++ I++  P  R
Sbjct: 160 LKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDR 219

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
              M+SAT+ P + ++A+ +  D   ++++++     + +YR  LV   D+D  +  +L 
Sbjct: 220 VSYMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLE 279

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++A++F +T+  VS   K L+   + +  +SG+LSQ++R  AL  +R+G+ R+ +A
Sbjct: 280 LEEPESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVA 339

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ DL  V   ++  + E ++HRSGRT RAG +G ++ +     +   +R+ 
Sbjct: 340 TDVAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMA 399

Query: 361 REANVSVVWEPAPSV------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              ++ +     P+       E ++ER A    + P   +    ++   +   L+   PE
Sbjct: 400 NTYDIELEKAELPADPHSEARELLQERYAN--AEAPANGEEPGVEDFVPLVKELSDEQPE 457

Query: 415 KIAAGFLRIHRAGLCAPEEIT 435
            +A+    ++       EE  
Sbjct: 458 LLASIITELYAEAKTEDEEEK 478


>gi|85711185|ref|ZP_01042245.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
 gi|85695098|gb|EAQ33036.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
          Length = 404

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 3/360 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   +   L   G      VQ+A L   +   D+L+S+ TG+GKT+AF L +   ++ +
Sbjct: 9   ELDDALISVLKAAGLNKPAKVQQAALPAAMDGHDLLISSPTGTGKTLAFLLPVLQHMM-D 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P +A  AL +APTRELA Q+ ++ E   A T +   V  GGV+   +   L+   
Sbjct: 68  FPRKQPGAA-RALILAPTRELAEQIYQQAEMFRALTELSSVVVTGGVNYGSQLSRLEQSH 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL D +  +   +  ++ +V+DEAD MLD+GF+  ++ I   +  ++  ++ 
Sbjct: 127 DIVIATPGRLLDLLEAEQYELEAVEWLVIDEADRMLDMGFKGVVKDIALHARNRQHAILC 186

Query: 186 SATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SATI    +   +     +   + +    R+   I   A L    D    ++  +    +
Sbjct: 187 SATIESDGVKAFSHTLLNEPELIEVTPPKRERGKIIEHAYLADTDDHKRQLLMAILKQHS 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             +IVF  TR  V      L      V+ L G+L   ER   +   +     V +ATDVA
Sbjct: 247 GRSIVFARTRERVQALASFLQSQDVPVMFLRGDLPHAERQQKIIEFKRRDNAVLVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+ D++LVI+ +L    +  +HR GRT RAG+KG+++ ++  +      ++ R   
Sbjct: 307 SRGLDIDDIKLVINYDLPKQADVYVHRIGRTARAGQKGLAISLVEAHDALLLGKIERYME 366


>gi|121604377|ref|YP_981706.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593346|gb|ABM36785.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 649

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 197/417 (47%), Gaps = 47/417 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE----------KDVLVSAQTGSGKTVAFGL 56
           + + + +A+++ G+   TSVQ A +   ++            D+LVS+QTGSGKT AF L
Sbjct: 57  LAKELLQAVADMGFTQPTSVQMATIPKAMQALDADPKAPKFTDLLVSSQTGSGKTAAFLL 116

Query: 57  ALASTLLAE------------------------------------NDRFSPASAPLALAI 80
            +  TLL +                                    N R   A+ P AL +
Sbjct: 117 PVLHTLLKQQEEAERNERAEFERLSAEAVARGEAPLKKPKRKDPTNMRNFKAATPGALIL 176

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R
Sbjct: 177 CPTRELAQQVCADAIDLVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQR 236

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA   
Sbjct: 237 SMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIMQLATRV 296

Query: 201 QKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
            +   RV I S + +H+ I         ++ +   + + LR      AIVF  T+     
Sbjct: 297 MRQPQRVEIDSPHEKHASITQSLLWADNMTHKRKLLDHWLRDTTINQAIVFACTQVECDG 356

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G L Q  R+  L   RDGR ++ +ATDVAARG+D+P +  VI+ 
Sbjct: 357 LANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQILVATDVAARGLDVPTITHVINY 416

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            L    E+ +HR GRTGRAGR+G ++ +     +R+ + +      ++       +E
Sbjct: 417 GLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYTQQNLKASVIAGLE 473


>gi|149714248|ref|XP_001504169.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX23
           (DEAD box protein 23) (100 kDa U5 snRNP-specific
           protein) (U5-100kD) (PRP28 homolog) isoform 1 [Equus
           caballus]
          Length = 820

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|183234221|ref|XP_651045.2| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|169801204|gb|EAL45659.2| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 694

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 100/447 (22%), Positives = 199/447 (44%), Gaps = 17/447 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  P  +   + L++  ++ +T +Q A +   L  +D++ +A+TGSGKT+AF + L 
Sbjct: 89  KRFDQFPISKATIQLLNKNRFITMTPIQRAAIPHALAGRDIIGAARTGSGKTLAFLIPLI 148

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     R++      ++ ++PTRELA Q+      +  +     A+  GG     E +
Sbjct: 149 EFMY--RSRWTELDGLCSIILSPTRELAQQIFDVFASIAGE-RFTAALITGGKDTKEEAK 205

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++    ++      L         N + L+ ++LDEAD +LD+GF+ D+  IL+  PK+
Sbjct: 206 VIRLMNVLICTPGRLLYHLDNTPHFNTTPLRMLILDEADRILDMGFKKDLTAILEHLPKQ 265

Query: 180 RRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ ++FSAT + ++  L +      + + V+  +++     ++   +L+   D+ N + +
Sbjct: 266 RQTMLFSATQTKSVQDLIRLSLRHPEYISVDEKAQHATPETLNQTYMLLGDGDKINVLFS 325

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRA 295
            +R H     IVF  T   V  F +   +     V     G  SQ  R+  L      + 
Sbjct: 326 FIRTHTNSKMIVFFQTTKEVRFFFETFKKLRVGAVLYLLYGRQSQNSRNEQLSTFTKEKR 385

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +   TD+A+RG+D+  ++ ++  +   +    +HR GRT R    G ++ ++  N +  
Sbjct: 386 GILFCTDIASRGLDIQGVDWIVQYDCPEDTAQYIHRVGRTARINHNGQALLLLTHNEEAF 445

Query: 356 AERLFREANVSV--VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-- 411
            E+L + A V +  V      ++ I     + +++ P+     +      +  L   H  
Sbjct: 446 IEQLEK-AKVPLNRVEPNIARMKNIANDITELMIEVPIIKHYAEKSIDAYIYSLTKMHNK 504

Query: 412 ---DPEKIAAGFLRIHRAGLCAPEEIT 435
              D  K+    +R          E T
Sbjct: 505 SVFDSAKVDEKAMRQSYGLFADKLEET 531


>gi|193068305|ref|ZP_03049268.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
 gi|192958257|gb|EDV88697.1| ATP-dependent RNA helicase SrmB [Escherichia coli E110019]
          Length = 444

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNSYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|319653444|ref|ZP_08007544.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
 gi|317394928|gb|EFV75666.1| hypothetical protein HMPREF1013_04161 [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 100/363 (27%), Positives = 184/363 (50%), Gaps = 6/363 (1%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
              E++   I +A  +  +   T+VQ   +   L  +D++  + TG+GKT+A+ L +   
Sbjct: 4   SFIEDMKPFIQKAWEKSAFAQPTTVQAEAVPLALEGRDIIAESPTGTGKTLAYLLPVLEN 63

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +        A  A+ +A ++EL +Q+  E++     +G+  A  IGG +V R+   L
Sbjct: 64  IDPDKQ------AVQAVILASSQELVMQILSEIQKWAEGSGIKAASFIGGANVKRQLEKL 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HI +GTPGR+ + I+ K L +  +K VVLDE D++L       ++ I+ S+ K+R+
Sbjct: 118 KKHPHIALGTPGRVLELIKQKKLKMHEVKTVVLDEGDQLLVPEHAQTVQNIVKSTLKERQ 177

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT+ P +  LAK    DA  + +  +    +        VA +     ++  +  
Sbjct: 178 VLLFSATLPPVVEQLAKELTADAEVIRVEKDETIQAAGVDHIYFVAEARDKIKMLEKISR 237

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF     +++   + L         L  +LS+ +R  A++  R G+  + IAT
Sbjct: 238 LEDIKALVFVKDIGNLTVMAEKLDFKNISSSTLHSDLSKFDRQKAIKNFRTGKTNMLIAT 297

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  +  V+H +   +    +HRSGRTGR G  G  + ++ +  +R  +++ +
Sbjct: 298 DVAARGLDIKGVTHVVHFDFPKDMNQYVHRSGRTGRFGASGTVISLVTEREERELKKMAK 357

Query: 362 EAN 364
           E  
Sbjct: 358 ELG 360


>gi|302545222|ref|ZP_07297564.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462840|gb|EFL25933.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 489

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 198/379 (52%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L+ +G      +Q A L   L  +DVL  AQTGSGKT+AFGLAL +     
Sbjct: 12  DLPDGLAAELALQGITVPFPIQGATLPSALTGRDVLGRAQTGSGKTLAFGLALLAR--TA 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L     +  +  A  +GG+S++R+   L++GA
Sbjct: 70  GQRAEPRR-PLALVLVPTRELAQQVSDALAPYARRLRLRPATVVGGMSINRQANALRDGA 128

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+ TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P   + L+F
Sbjct: 129 EVVIATPGRLHDLIERGDCRLDQVRITVLDEADQMADMGFLPQVTRLLRQVPADGQRLLF 188

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I+ L + +  D    ++       + +++  + +A +D+ +  V         
Sbjct: 189 SATLDNQISRLVREFLTDPALHSVDDSAGAVTTMEHHVLHIADTDKRS--VATRVAARDG 246

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T+ L  +  +  AL G  SQ +R+  L+  + G     +AT+VAA
Sbjct: 247 RVIMFLDTKHAVDRLTRHLLANGVRAAALHGGKSQPQRTKTLERFKTGDVTALVATNVAA 306

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 307 RGIHVDDLDLVVNVDPPSDHKDYLHRGGRTARAGGSGSVVTLVLPDQRREMTRLMTAAGI 366

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P+   +   D++
Sbjct: 367 T------PNTAQVHSTDSE 379


>gi|169844518|ref|XP_001828980.1| ROK1 [Coprinopsis cinerea okayama7#130]
 gi|116510092|gb|EAU92987.1| ROK1 [Coprinopsis cinerea okayama7#130]
          Length = 574

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/411 (23%), Positives = 190/411 (46%), Gaps = 11/411 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--- 62
           ++P  +   L++ GY   T++Q A +   L  +D+   + TG+GKT+A+ L L + L   
Sbjct: 140 SLPPQLFNNLAKNGYHTPTAIQSAGIPVLLESRDLAAISPTGTGKTLAYLLPLFARLGAP 199

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +    S      A+ +APTRELA Q+  E   L       + +     +     ++++
Sbjct: 200 LHQTHDQSAGKGVRAVVVAPTRELAHQIYNECLKLAQGRKWRITLFSKATASTLATKEVR 259

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FILDSSPKKRR 181
           +   I+V TP RL   ++     + +++ +VLDEAD +LD  F +  E  +   +  + +
Sbjct: 260 DKTDIIVSTPLRLVAAVQEGKFELENVRYLVLDEADRLLDTEFLEQTEELVASCTHSRLQ 319

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILR 240
             +FSAT+   +  +A +  +D +R+ +  ++     I      +     +  +++  L 
Sbjct: 320 KAIFSATLPAGVEKIAMDMLQDPIRLVVGLKDTPLPLISQSLTYVADDGSKLPSLLTYLA 379

Query: 241 YHGAKNAIVFCSTR-ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +VF S++  + S   ++L  ++  V  L   ++ +ER + +  MR G   + I
Sbjct: 380 QPYNPPVLVFTSSQPRATSLAEELLLNNIKNVDCLHAGMTNKEREDVITRMRKGETWILI 439

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            T+V ARG+D   +  VI+ +  ++ ++ +HR GRTGRAGR+G +V           + +
Sbjct: 440 TTEVMARGMDFKGVREVINYDFPTSVQSYVHRIGRTGRAGREGKAVTFFTNEDAPFLKII 499

Query: 360 FREANVSVVWEP-----APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 S    P      P    I+ R   +I +  +  ++ +   ++ + 
Sbjct: 500 ANVILQSGSQVPEWILKLPKPSKIKRRLMGKIKRPEIVNNARRLGRREAIK 550


>gi|55749865|ref|NP_874358.2| DEAD box protein 53 [Homo sapiens]
 gi|143811384|sp|Q86TM3|DDX53_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX53; AltName:
           Full=Cancer-associated gene protein; AltName:
           Full=Cancer/testis antigen 26; Short=CT26; AltName:
           Full=DEAD box protein 53; AltName: Full=DEAD box protein
           CAGE
 gi|119619396|gb|EAW98990.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 167/372 (44%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + +++   G V  T +Q       L+  D++V AQTG+GKT+++ +     L 
Sbjct: 227 FQQYPD-LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLD 285

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+ V  E    Y+  G+      GG + + +  D+  
Sbjct: 286 SQPISREQRNGPGMLVLTPTRELALHVEAECSK-YSYKGLKSICIYGGRNRNGQIEDISK 344

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTV 404

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA +Y +   +           + +    ++    ++       +   
Sbjct: 405 MTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENM 464

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S +      +           +L G   Q ++  A++  + G  ++ I T
Sbjct: 465 SPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITT 524

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ +RG+DL D+  V + +   N +  +HR G  GR G+ G SV +I Q   + A  L +
Sbjct: 525 DIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 585 ILDRANQSVPED 596


>gi|330501428|ref|YP_004378297.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
 gi|328915714|gb|AEB56545.1| ATP-dependent RNA helicase DbpA [Pseudomonas mendocina NK-01]
          Length = 458

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 131/376 (34%), Positives = 198/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L+  GY  +T +Q A L   L+ +D++  A+TGSGKT AFG+ L   
Sbjct: 6   FASLPLSAAMQANLAAIGYAEMTPIQAASLPLILKGRDLIAQAKTGSGKTAAFGIGLLHP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRD 120
           L              AL + PTRELA QV +E+  L      +  +   GGV    +   
Sbjct: 66  LNP------RYFGCQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH++VGTPGR+ +H+R   L +  L  +VLDEAD MLD+GF D I  I++ +P +R
Sbjct: 120 LEHGAHVIVGTPGRVQEHLRKGTLKVDGLNTLVLDEADRMLDMGFVDSISEIIEQTPARR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA  + +   RV           I+ R   +A   R  A+  +LR
Sbjct: 180 QTLLFSATYPAGIEQLAARFLRTPERV-EVEAMHDDDQIEQRFYEIAPGQRMQAVSILLR 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +   +  + FC+TR         L        AL G+L Q+ER   L +  +    V +A
Sbjct: 239 HFRKQPVVAFCATRQQCDELAAQLEAEKISAAALHGDLEQRERDQILALFANRSLSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  LE+VI+ ELS + E  +HR GR+GRAG KG+++ ++      RA+ + 
Sbjct: 299 TDVAARGLDIAGLEMVINVELSRDAEVHIHRIGRSGRAGDKGLALSLVAPPEASRAQAIE 358

Query: 361 REANVSVVWEPAPSVE 376
                ++ W P P+ +
Sbjct: 359 TLQGKTLAWYPLPATK 374



 Score = 58.5 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EV 513
           G            +  G K+K     ++  L   +GI    +G I +      V    +V
Sbjct: 376 GGEPLLPPMHTLCIGAGRKEKLRPGDILGALTGEAGIPGDQVGKIALFDYQALVAVQRDV 435

Query: 514 SADGVDLLRRTVKLDKGIQLKYL 536
           +   +  L       + ++++ L
Sbjct: 436 ARQALKRLSEGKIKGRTLRVRLL 458


>gi|325275059|ref|ZP_08141046.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
 gi|324099808|gb|EGB97667.1| ATP-dependent RNA helicase RhlB [Pseudomonas sp. TJI-51]
          Length = 483

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/371 (30%), Positives = 183/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 101 LSSEVMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTP 160

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
             +      P AL IAPTREL VQ+ ++   L   TG  V++   G     + +      
Sbjct: 161 APKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARH 220

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 221 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 280

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 281 LLFSATFTEDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 340

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 341 RWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRITVLVATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 401 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTNGVSISFAGEDDSYQLPAIEEL 460

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 461 LGRKIKCEMPP 471


>gi|290581036|ref|YP_003485428.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
 gi|254997935|dbj|BAH88536.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
          Length = 447

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/464 (23%), Positives = 195/464 (42%), Gaps = 28/464 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I  AL+   +   T VQE ++   L  KD++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YINNALANLHFEGPTEVQERLIPLILSGKDLVGESKTGSGKTHTFLLPIFEKLE 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRD 120
            ++          A+  AP+RELA Q+    + +   +   + +         + +  + 
Sbjct: 65  EDSLDV------QAVITAPSRELARQIYEAAKQIAQFSEQNIRLANYIGGTDKLRQVEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 IV+GTPGR+ D ++   L+I      V+DEAD  LDLGF D ++ I  S PK  
Sbjct: 119 KATQPQIVIGTPGRIYDLVKSGHLDIHKAHTFVVDEADMTLDLGFLDTVDKIAASLPKNI 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSATI   +    K Y    +   I +       I    +     D++  I+ I++
Sbjct: 179 QLLVFSATIPQKLQPFLKKYLNHPIIEKIKTSTVIADTISNWLISTKGRDKNQQILEIVK 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+F +T+  V      L+ + F+   + G +  +ER   +  ++       +A
Sbjct: 239 SLKPYLAIIFANTKDRVDDLHAFLSANGFKTAKIHGGIPPRERKRIMNQVKQLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGLDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + +V+ P             ++L++  F D+   D +        K D E +    
Sbjct: 359 K---LGIVFVP-------------KVLKNGEFQDTYDRDRRLNRKKTQEKLDLEMMGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            +  +      ++I        R   R   RA           +
Sbjct: 403 KKKKKIKPGYKKKIQWKVNEKRRKERRFVKRAQNRANRKAKKQR 446


>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
          Length = 664

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 192/381 (50%), Gaps = 18/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    IP  +  AL  +G    T +Q   +      +D++  + TGSGKT++F + L  
Sbjct: 215 MK----IPACLISALKRKGINIPTPIQMQGIPAAFTGRDMIGISFTGSGKTLSFSIPLIM 270

Query: 61  TLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK------TGVVVAVCIGGV 112
             L +     F     P +L I P+RELA Q G ELE+L         + + VAV IGG 
Sbjct: 271 AALEQEIEMPFVRDEGPFSLVICPSRELAKQTGHELEYLADHLDAGGFSKLRVAVAIGGT 330

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           +V      ++ G H++VGTPGRL D ++   +++   K +VLDEAD M+D+GF +D+ FI
Sbjct: 331 AVKETMDVVKKGVHVLVGTPGRLMDMLQKGMIHLETCKQLVLDEADRMVDMGFEEDVRFI 390

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L     +R+ L++SAT+   I   AK+   D + VN+        +I      V    + 
Sbjct: 391 LSYFKSQRQTLLYSATMPMKIKDFAKSALVDPLTVNVGRAGAASLNIRQDIEYVLDEAKV 450

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++ +L+       ++F   + +V +  + L     +  A+ G   Q++R  A +  R 
Sbjct: 451 VTVLQMLQKTSPP-VLIFAERKRAVDKVHEYLLLKGVECAAIHGGKDQEDRMEACRQFRG 509

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP--- 349
           G   V +ATD+A++G+D P++E VI+ ++  + EN +HR GRTGR   +G++   +    
Sbjct: 510 GEKDVLVATDIASKGLDFPEIEHVINYDMPEDIENYIHRIGRTGRGNHQGVATTFVNSKS 569

Query: 350 --QNMQRRAERLFREANVSVV 368
              ++      L  EAN +V 
Sbjct: 570 CENSILLDLRGLILEANQTVP 590


>gi|301783663|ref|XP_002927245.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Ailuropoda melanoleuca]
 gi|281343724|gb|EFB19308.1| hypothetical protein PANDA_017010 [Ailuropoda melanoleuca]
          Length = 820

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|221130645|ref|XP_002155556.1| PREDICTED: similar to topoisomerase (DNA) III beta [Hydra
           magnipapillata]
          Length = 1349

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 122/448 (27%), Positives = 205/448 (45%), Gaps = 20/448 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  +     +AL   GY   T +Q       + ++DV+  A+TGSGKT+AF L    
Sbjct: 109 FEDFRGLNPAQLKALYNSGYKAPTPIQAQTWPIAMFDRDVVSIAKTGSGKTLAFLLPAYM 168

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     + + +     L +APTRELA Q+  E E   +  G   A   GG     + + 
Sbjct: 169 KINLRRSQGTIS----VLVLAPTRELATQIQLEAEKFGSVAGYYSACAYGGAPKRNQLQA 224

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           + +G  ++V TPGRL D +    +N+S +  +VLDEAD MLD+GF   I  I+   P+KR
Sbjct: 225 INSGISVLVATPGRLNDFLESNEVNLSSVFYLVLDEADRMLDMGFEPQIRTIIRCLPRKR 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN--------IASENRQHSDIDYRAVLVALSDRD 232
           + LMFSAT    +  LA ++    V +          +          +  +L +  D+D
Sbjct: 285 QTLMFSATWPEEVRRLADDFLYQPVHIRLGIVGGSTSSGLQANEMIKQHLILLNSGEDKD 344

Query: 233 ---NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
                ++    +      ++F + + +    T +L        A+ G+  Q+ R   L  
Sbjct: 345 GELINLIKSRFHQNRDLVLIFVARKNTCDFLTNILNRVGIAASAMHGDRDQKYREKTLAA 404

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG   + +ATD+A+RGID+  +  VI+ +L+++ E+ +HR GRTGRAG  G S   + 
Sbjct: 405 FRDGSRPIMVATDLASRGIDVRGISAVINYDLANSTEDYVHRIGRTGRAGMSGESFTFLT 464

Query: 350 QNMQRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV-- 406
           ++     + +   E        P P+V+ +  R   R  Q+     +      K++ V  
Sbjct: 465 RSNDDIWKAIGIVEVMAKTGQYPPPAVQELINRVKMRQEQNKERRAAENEQFSKVLIVAE 524

Query: 407 --LLAKHDPEKIAAGFLRIHRAGLCAPE 432
              +AK   E+++ G  R  R    A +
Sbjct: 525 KPSVAKMIAEQLSGGHFRTRRGKSRANQ 552


>gi|156121051|ref|NP_001095672.1| probable ATP-dependent RNA helicase DDX23 [Bos taurus]
 gi|151554096|gb|AAI47903.1| DDX23 protein [Bos taurus]
 gi|296487810|gb|DAA29923.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Bos taurus]
          Length = 820

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 201/399 (50%), Gaps = 33/399 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 516 RMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575

Query: 177 ---------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                 K R+ +MF+AT+ PA+  LA++Y +    V I S  + 
Sbjct: 576 KPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKP 635

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H  ++ +  L++ S++   ++ IL        I+F + +       K L +  +    L 
Sbjct: 636 HERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLH 695

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G   Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRT
Sbjct: 696 GGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRT 755

Query: 336 GRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           GRAG+ G+++  + +        +F E   +++  P  S
Sbjct: 756 GRAGKSGVAITFLTKEDS----AVFYELKQAILESPVSS 790


>gi|57111967|ref|XP_548903.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 221 PILMQLKQPTNK-----GFRALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAK 275

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 276 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 335

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 336 SIFLACTSHKVRRAMFSAIFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSE 395

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 396 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVH 455

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 456 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 515

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 516 TEDDKPLLRSVANVIQQAGCPVPE 539


>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 748

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 193/391 (49%), Gaps = 12/391 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   +   +  A+  +GY   T +Q   L   L   DV+  A+TGSGKT AF + +   
Sbjct: 9   FETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAAFLIPMIEK 68

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L+      S  +   A+ ++P+RELA+Q  +  + L   T + +A+ +GG S+  +   L
Sbjct: 69  LVEH----SNNAGARAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQFEQL 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                +++ TPGRL  H+     +++  ++ +V DEAD + ++GF + +  I+    + R
Sbjct: 125 AGNPDVIIATPGRLMHHLSEVEGMSLRTVEYIVFDEADRLFEMGFAEQLRQIMSHLGESR 184

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT+   +   AK   +D   V +  E+R   D+      V   ++  A+V+++R
Sbjct: 185 QVLLFSATLPRLLADFAKAGLRDPHLVRLDVESRISPDLQLSFFTVRHDEKPAALVHLVR 244

Query: 241 YHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  IVF +T+  V    ++L      +  + G + Q  R   +   R G+ ++ 
Sbjct: 245 EVIPAEQQTIVFVATKHHVEFLYELLKTEGIDISVVYGSMDQAARKIHIAKFRAGKTKLL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+P L+ VI+ +    P+  +HR GR  RAGR G S   +          
Sbjct: 305 LVTDVAARGIDIPLLDNVINYDFPPKPKLFVHRVGRAARAGRTGTSYSFVTSEEMPYVLD 364

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           L     +S    PAP  EAI   D ++++ D
Sbjct: 365 L--HLYLSKGIRPAPLEEAIVA-DREKVMAD 392


>gi|73966874|ref|XP_852958.1| PREDICTED: similar to ATP-dependent RNA helicase ROK1 isoform a
           [Canis familiaris]
          Length = 598

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 221 PILMQLKQPTNK-----GFRALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAK 275

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 276 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 335

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 336 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSE 395

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 396 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVH 455

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 456 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 515

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 516 TEDDKPLLRSVANVIQQAGCPVPE 539


>gi|71000385|ref|XP_754887.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
 gi|66852524|gb|EAL92849.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus Af293]
 gi|159127900|gb|EDP53015.1| DEAD/DEAH box RNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 587

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 31/396 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++  +  ++ E +    Y   T +Q   +   L   D++  AQTGSGKT AF + + S 
Sbjct: 132 FDDAGLHPIMRENIRLCNYEVPTPIQAYAIPAVLTGHDLIAIAQTGSGKTAAFLIPVLSQ 191

Query: 62  LLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ +  
Sbjct: 192 LMGKAKKLAAPRPNLANGFDPSVDAVRAEPLVLIVAPTRELSTQIFDEARRLCYRSMLRP 251

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLG 164
            V  GG  V  +R +LQ G  I++GTPGRL D +    + ++  +K  ++DEADE+L   
Sbjct: 252 CVVYGGAPVREQREELQKGCDILIGTPGRLLDFMDKPHVLSLRRVKYTIIDEADELLLSD 311

Query: 165 FRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           +  D   I+     +     R M+  +           K   +D VR+ I      H ++
Sbjct: 312 WESDFTRIMSGGDVNEDADHRYMMFSATFNRECRRLARKFLAEDHVRIRIGRPGSTHINV 371

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           D   +      +   + ++L        ++F +T+         L        ++  + +
Sbjct: 372 DQTIIYAEDHLKKQCLYDLLLAMPPSRTLIFVNTKIQADFLDDFLYNMGLPSTSIHSDRT 431

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRT 335
           Q+ER +AL+  R  R  + +AT V+ARG+D+ ++  V++ +L S         +HR GRT
Sbjct: 432 QREREDALRSFRSARCPIMVATGVSARGLDIKNVMHVVNFDLPSAAHGGITEYIHRIGRT 491

Query: 336 GRAGRKGMSVFVIPQ---NMQRRAERLFREANVSVV 368
            R G +G++         ++     ++  E    V 
Sbjct: 492 ARIGNEGLATSFYNDKNSDIAPDLVKILIETGQKVP 527


>gi|331664144|ref|ZP_08365054.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
 gi|331059943|gb|EGI31920.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA143]
          Length = 444

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|261331698|emb|CBH14692.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 738

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 17/384 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++     +   +++ GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 291 VESFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPV 350

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+A+ +APTRELA+Q+  E+  L  +T +   V  GG     
Sbjct: 351 VHYILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPT 410

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              +      I+V  PGRL D      ++ S +K ++LDEAD ML++GF + IE+++ S 
Sbjct: 411 RFEN-----DILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASR 465

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--------NRQHSDIDYRAVLVAL 228
                      T+  + T   +        +             +   +       +   
Sbjct: 466 YSDMPSSEERQTLMFSATFPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEA 525

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +D     I +       ++F  T+ S  +    L         + G+  Q +R  AL+
Sbjct: 526 EKKDKLFDIIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALK 585

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   + +ATDVA+RG+D+P++  VI  +L    ++  HR GRTGRAG KG++    
Sbjct: 586 DFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFY 645

Query: 349 PQNMQRRAERLFREANVSVVWEPA 372
            +N +  A  L+          P 
Sbjct: 646 DRNNRNLAVELYHYLREHEQEVPM 669


>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
 gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
           50983]
          Length = 952

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/389 (26%), Positives = 179/389 (46%), Gaps = 30/389 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +  TL    
Sbjct: 30  LSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQTL---- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   
Sbjct: 86  KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FS
Sbjct: 146 VLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---------- 236
           AT+   +T  ++   +      I  +             +  +                 
Sbjct: 206 ATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKLQS 265

Query: 237 ----------------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                              +   +   IVF +TR +V  F  +L +       + G + Q
Sbjct: 266 MGNANADSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQ 325

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG 
Sbjct: 326 TQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGA 385

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVW 369
           KG+   ++  +    A  L     +   +
Sbjct: 386 KGLCASLVTHDDMPYAVELMLFLGMPSQF 414


>gi|323354469|gb|EGA86308.1| Hca4p [Saccharomyces cerevisiae VL3]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|318081433|ref|ZP_07988765.1| ATP-dependent RNA helicase [Streptomyces sp. SA3_actF]
          Length = 488

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/439 (28%), Positives = 207/439 (47%), Gaps = 9/439 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 58  LPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASL---A 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G  
Sbjct: 115 GGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGVD 174

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 175 ILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLFS 234

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  D +   + +     + + +  ++V   D+    V          
Sbjct: 235 ATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAP--VTAAIASRKGR 292

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 293 TIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAAR 352

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 353 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 412

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A+ + +   I       +     E        A+ + E +     R  R 
Sbjct: 413 AARHQIGS--AVFDAELAEITGARSMTEV--QAESAGQSAKQAEREVEDLTRELERAKRR 468

Query: 427 GLCAPEEITPVSLVSGRDR 445
                 E   +   + R+R
Sbjct: 469 ASEYRAEADRLVARAARER 487


>gi|290771182|emb|CAY80746.2| Hca4p [Saccharomyces cerevisiae EC1118]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|207343942|gb|EDZ71243.1| YJL033Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 675

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|190409466|gb|EDV12731.1| RNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271064|gb|EEU06165.1| Hca4p [Saccharomyces cerevisiae JAY291]
 gi|323337099|gb|EGA78355.1| Hca4p [Saccharomyces cerevisiae Vin13]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|160380619|sp|A6ZPU3|DBP4_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|151945052|gb|EDN63303.1| helicase CA [Saccharomyces cerevisiae YJM789]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|51013687|gb|AAT93137.1| YJL033W [Saccharomyces cerevisiae]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|1619952|gb|AAB17005.1| putative RNA helicase [Saccharomyces cerevisiae]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|6322427|ref|NP_012501.1| Hca4p [Saccharomyces cerevisiae S288c]
 gi|1170186|sp|P20448|DBP4_YEAST RecName: Full=ATP-dependent RNA helicase HCA4; AltName: Full=DEAD
           box protein 4; AltName: Full=Helicase CA4; AltName:
           Full=Helicase UF1
 gi|1008155|emb|CAA89324.1| HCA4 [Saccharomyces cerevisiae]
 gi|285812868|tpg|DAA08766.1| TPA: Hca4p [Saccharomyces cerevisiae S288c]
          Length = 770

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 175/371 (47%), Gaps = 15/371 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++P      + L E  ++ LT +Q   +   L+  DVL +A+TGSGKT+AF + + 
Sbjct: 41  KFFKDLPISDPTLKGLRESSFIKLTEIQADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q+   L  + + T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQIYEVLTKIGSHTSFSAGLVIGGKDVKFELE 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ +    
Sbjct: 159 RISRINILIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPS 218

Query: 180 RRMLMFSATISPAI--------TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           R+ L+FSAT S ++        T        D +  ++  E      +    + V L+D+
Sbjct: 219 RQTLLFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLADK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QM 289
            + + + ++ H     IVF S+   V    +   +    +  +     Q++R+       
Sbjct: 279 LDILFSFIKSHLKCKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQRARTETLDK 338

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVI 348
               +     ATDV ARGID P ++ V+  +   + +  +HR GR  R G+KG S + + 
Sbjct: 339 FNRAQQVCLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRVGRCARYGKKGKSLIMLT 398

Query: 349 PQNMQRRAERL 359
           PQ  +   +RL
Sbjct: 399 PQEQEAFLKRL 409


>gi|15832696|ref|NP_311469.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113917|ref|NP_708427.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 301]
 gi|26248941|ref|NP_754981.1| ATP-dependent RNA helicase SrmB [Escherichia coli CFT073]
 gi|30063977|ref|NP_838148.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 2a str. 2457T]
 gi|74313139|ref|YP_311558.1| ATP-dependent RNA helicase SrmB [Shigella sonnei Ss046]
 gi|91211903|ref|YP_541889.1| ATP-dependent RNA helicase SrmB [Escherichia coli UTI89]
 gi|110642738|ref|YP_670468.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110806520|ref|YP_690040.1| ATP-dependent RNA helicase SrmB [Shigella flexneri 5 str. 8401]
 gi|117624797|ref|YP_853710.1| ATP-dependent RNA helicase SrmB [Escherichia coli APEC O1]
 gi|157162056|ref|YP_001459374.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|168748352|ref|ZP_02773374.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757760|ref|ZP_02782767.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168765031|ref|ZP_02790038.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768681|ref|ZP_02793688.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773496|ref|ZP_02798503.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778555|ref|ZP_02803562.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790377|ref|ZP_02815384.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|170019141|ref|YP_001724095.1| ATP-dependent RNA helicase SrmB [Escherichia coli ATCC 8739]
 gi|170684258|ref|YP_001744765.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|188494838|ref|ZP_03002108.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|191174027|ref|ZP_03035544.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|193064108|ref|ZP_03045193.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194429273|ref|ZP_03061800.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194432156|ref|ZP_03064445.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194437565|ref|ZP_03069661.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|195936724|ref|ZP_03082106.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805922|ref|ZP_03248259.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813312|ref|ZP_03254641.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820708|ref|ZP_03261028.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397789|ref|YP_002272051.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920055|ref|YP_002294139.1| ATP-dependent RNA helicase SrmB [Escherichia coli SE11]
 gi|215487920|ref|YP_002330351.1| ATP-dependent RNA helicase SrmB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217327593|ref|ZP_03443676.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547896|ref|YP_002381687.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ATCC 35469]
 gi|218555158|ref|YP_002388071.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI1]
 gi|218559497|ref|YP_002392410.1| ATP-dependent RNA helicase SrmB [Escherichia coli S88]
 gi|218696204|ref|YP_002403871.1| ATP-dependent RNA helicase SrmB [Escherichia coli 55989]
 gi|218701090|ref|YP_002408719.1| ATP-dependent RNA helicase SrmB [Escherichia coli IAI39]
 gi|218706079|ref|YP_002413598.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMN026]
 gi|227887612|ref|ZP_04005417.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|237705086|ref|ZP_04535567.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|253772524|ref|YP_003035355.1| ATP-dependent RNA helicase SrmB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162551|ref|YP_003045659.1| ATP-dependent RNA helicase SrmB [Escherichia coli B str. REL606]
 gi|254794527|ref|YP_003079364.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017274|ref|ZP_05431139.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|256021737|ref|ZP_05435602.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 4_1_40B]
 gi|260845261|ref|YP_003223039.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|260856670|ref|YP_003230561.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|260869263|ref|YP_003235665.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|261222988|ref|ZP_05937269.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259462|ref|ZP_05951995.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283852|ref|YP_003500670.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406018|ref|ZP_06650010.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|293410992|ref|ZP_06654568.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|293415845|ref|ZP_06658488.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|293446931|ref|ZP_06663353.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|298381818|ref|ZP_06991417.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|300820745|ref|ZP_07100895.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300898309|ref|ZP_07116657.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300904240|ref|ZP_07122099.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300920744|ref|ZP_07137150.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300927702|ref|ZP_07143270.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300935710|ref|ZP_07150679.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300951705|ref|ZP_07165525.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300958783|ref|ZP_07170895.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300974119|ref|ZP_07172469.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300982280|ref|ZP_07175991.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301021938|ref|ZP_07185897.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|301024863|ref|ZP_07188500.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|301047215|ref|ZP_07194307.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|301302943|ref|ZP_07209071.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301648340|ref|ZP_07248080.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|306814360|ref|ZP_07448522.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307139213|ref|ZP_07498569.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|312965492|ref|ZP_07779724.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312973178|ref|ZP_07787350.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|331643200|ref|ZP_08344335.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331648323|ref|ZP_08349412.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331654039|ref|ZP_08355040.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331658721|ref|ZP_08359665.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331669327|ref|ZP_08370175.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331674026|ref|ZP_08374789.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331678573|ref|ZP_08379248.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331684226|ref|ZP_08384822.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332278266|ref|ZP_08390679.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|26109347|gb|AAN81549.1|AE016764_231 ATP-dependent RNA helicase srmB [Escherichia coli CFT073]
 gi|13362913|dbj|BAB36865.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. Sakai]
 gi|24053020|gb|AAN44134.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 301]
 gi|30042233|gb|AAP17958.1| ATP-dependent RNA helicase [Shigella flexneri 2a str. 2457T]
 gi|73856616|gb|AAZ89323.1| ATP-dependent RNA helicase [Shigella sonnei Ss046]
 gi|91073477|gb|ABE08358.1| ATP-dependent RNA helicase [Escherichia coli UTI89]
 gi|110344330|gb|ABG70567.1| ATP-dependent RNA helicase SrmB [Escherichia coli 536]
 gi|110616068|gb|ABF04735.1| ATP-dependent RNA helicase [Shigella flexneri 5 str. 8401]
 gi|115513921|gb|ABJ01996.1| putative transcriptional regulator YfiE [Escherichia coli APEC O1]
 gi|157067736|gb|ABV06991.1| ATP-dependent RNA helicase SrmB [Escherichia coli HS]
 gi|169754069|gb|ACA76768.1| DEAD/DEAH box helicase domain protein [Escherichia coli ATCC 8739]
 gi|170521976|gb|ACB20154.1| ATP-dependent RNA helicase SrmB [Escherichia coli SMS-3-5]
 gi|187770668|gb|EDU34512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017076|gb|EDU55198.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490037|gb|EDU65140.1| ATP-dependent RNA helicase SrmB [Escherichia coli 53638]
 gi|189003613|gb|EDU72599.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355321|gb|EDU73740.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362179|gb|EDU80598.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365096|gb|EDU83512.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370150|gb|EDU88566.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC869]
 gi|190905718|gb|EDV65340.1| ATP-dependent RNA helicase SrmB [Escherichia coli F11]
 gi|192929343|gb|EDV82952.1| ATP-dependent RNA helicase SrmB [Escherichia coli E22]
 gi|194412681|gb|EDX28976.1| ATP-dependent RNA helicase SrmB [Escherichia coli B171]
 gi|194419685|gb|EDX35765.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae 1012]
 gi|194423371|gb|EDX39362.1| ATP-dependent RNA helicase SrmB [Escherichia coli 101-1]
 gi|208725723|gb|EDZ75324.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734589|gb|EDZ83276.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740831|gb|EDZ88513.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159189|gb|ACI36622.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209762790|gb|ACI79707.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762792|gb|ACI79708.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209762796|gb|ACI79710.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|209913314|dbj|BAG78388.1| ATP-dependent RNA helicase [Escherichia coli SE11]
 gi|215265992|emb|CAS10401.1| ATP-dependent RNA helicase [Escherichia coli O127:H6 str. E2348/69]
 gi|217319960|gb|EEC28385.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352936|emb|CAU98735.1| ATP-dependent RNA helicase [Escherichia coli 55989]
 gi|218355437|emb|CAQ88046.1| ATP-dependent RNA helicase [Escherichia fergusonii ATCC 35469]
 gi|218361926|emb|CAQ99526.1| ATP-dependent RNA helicase [Escherichia coli IAI1]
 gi|218366266|emb|CAR04013.1| ATP-dependent RNA helicase [Escherichia coli S88]
 gi|218371076|emb|CAR18903.1| ATP-dependent RNA helicase [Escherichia coli IAI39]
 gi|218433176|emb|CAR14074.1| ATP-dependent RNA helicase [Escherichia coli UMN026]
 gi|222034281|emb|CAP77022.1| ATP-dependent RNA helicase srmB [Escherichia coli LF82]
 gi|226901452|gb|EEH87711.1| ATP-dependent RNA helicase SrmB [Escherichia sp. 3_2_53FAA]
 gi|227835962|gb|EEJ46428.1| ATP-dependent RNA helicase [Escherichia coli 83972]
 gi|242378176|emb|CAQ32951.1| SrmB, DEAD-box RNA helicase [Escherichia coli BL21(DE3)]
 gi|253323568|gb|ACT28170.1| DEAD/DEAH box helicase domain protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974452|gb|ACT40123.1| ATP-dependent RNA helicase [Escherichia coli B str. REL606]
 gi|253978619|gb|ACT44289.1| ATP-dependent RNA helicase [Escherichia coli BL21(DE3)]
 gi|254593927|gb|ACT73288.1| ATP-dependent RNA helicase [Escherichia coli O157:H7 str. TW14359]
 gi|257755319|dbj|BAI26821.1| ATP-dependent RNA helicase SrmB [Escherichia coli O26:H11 str.
           11368]
 gi|257760408|dbj|BAI31905.1| ATP-dependent RNA helicase SrmB [Escherichia coli O103:H2 str.
           12009]
 gi|257765619|dbj|BAI37114.1| ATP-dependent RNA helicase SrmB [Escherichia coli O111:H- str.
           11128]
 gi|281179625|dbj|BAI55955.1| ATP-dependent RNA helicase [Escherichia coli SE15]
 gi|281601988|gb|ADA74972.1| ATP-dependent RNA helicase [Shigella flexneri 2002017]
 gi|284922526|emb|CBG35613.1| ATP-dependent RNA helicase [Escherichia coli 042]
 gi|290763725|gb|ADD57686.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323761|gb|EFE63189.1| ATP-dependent RNA helicase SrmB [Escherichia coli B088]
 gi|291428226|gb|EFF01253.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1412]
 gi|291433493|gb|EFF06472.1| ATP-dependent RNA helicase SrmB [Escherichia coli B185]
 gi|291471460|gb|EFF13944.1| ATP-dependent RNA helicase SrmB [Escherichia coli B354]
 gi|294490578|gb|ADE89334.1| ATP-dependent RNA helicase SrmB [Escherichia coli IHE3034]
 gi|298279260|gb|EFI20774.1| ATP-dependent RNA helicase SrmB [Escherichia coli FVEC1302]
 gi|299881405|gb|EFI89616.1| DEAD/DEAH box helicase [Escherichia coli MS 196-1]
 gi|300300892|gb|EFJ57277.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300308942|gb|EFJ63462.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300314531|gb|EFJ64315.1| DEAD/DEAH box helicase [Escherichia coli MS 175-1]
 gi|300357971|gb|EFJ73841.1| DEAD/DEAH box helicase [Escherichia coli MS 198-1]
 gi|300396394|gb|EFJ79932.1| DEAD/DEAH box helicase [Escherichia coli MS 69-1]
 gi|300403773|gb|EFJ87311.1| DEAD/DEAH box helicase [Escherichia coli MS 84-1]
 gi|300408834|gb|EFJ92372.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|300412315|gb|EFJ95625.1| DEAD/DEAH box helicase [Escherichia coli MS 115-1]
 gi|300449067|gb|EFK12687.1| DEAD/DEAH box helicase [Escherichia coli MS 116-1]
 gi|300459099|gb|EFK22592.1| DEAD/DEAH box helicase [Escherichia coli MS 21-1]
 gi|300464255|gb|EFK27748.1| DEAD/DEAH box helicase [Escherichia coli MS 187-1]
 gi|300526498|gb|EFK47567.1| DEAD/DEAH box helicase [Escherichia coli MS 119-7]
 gi|300841878|gb|EFK69638.1| DEAD/DEAH box helicase [Escherichia coli MS 124-1]
 gi|301073616|gb|EFK88422.1| DEAD/DEAH box helicase [Escherichia coli MS 146-1]
 gi|305851754|gb|EFM52206.1| ATP-dependent RNA helicase SrmB [Escherichia coli NC101]
 gi|307554595|gb|ADN47370.1| ATP-dependent RNA helicase SrmB [Escherichia coli ABU 83972]
 gi|307625875|gb|ADN70179.1| ATP-dependent RNA helicase SrmB [Escherichia coli UM146]
 gi|309702962|emb|CBJ02293.1| ATP-dependent RNA helicase [Escherichia coli ETEC H10407]
 gi|310331773|gb|EFP99008.1| ATP-dependent RNA helicase srmB [Escherichia coli 1827-70]
 gi|312289912|gb|EFR17800.1| ATP-dependent RNA helicase srmB [Escherichia coli 2362-75]
 gi|312947148|gb|ADR27975.1| ATP-dependent RNA helicase SrmB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648255|gb|EFS12699.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2a str. 2457T]
 gi|315256604|gb|EFU36572.1| DEAD/DEAH box helicase [Escherichia coli MS 85-1]
 gi|315287992|gb|EFU47394.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
 gi|315294533|gb|EFU53881.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
 gi|315300543|gb|EFU59772.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
 gi|315615838|gb|EFU96470.1| ATP-dependent RNA helicase srmB [Escherichia coli 3431]
 gi|320188917|gb|EFW63576.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320196412|gb|EFW71036.1| ATP-dependent RNA helicase SrmB [Escherichia coli WV_060327]
 gi|320200140|gb|EFW74729.1| ATP-dependent RNA helicase SrmB [Escherichia coli EC4100B]
 gi|320640825|gb|EFX10319.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           G5101]
 gi|320657068|gb|EFX24887.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662733|gb|EFX30072.1| ATP-dependent RNA helicase SrmB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667553|gb|EFX34473.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323156234|gb|EFZ42393.1| ATP-dependent RNA helicase srmB [Escherichia coli EPECa14]
 gi|323159233|gb|EFZ45223.1| ATP-dependent RNA helicase srmB [Escherichia coli E128010]
 gi|323167785|gb|EFZ53480.1| ATP-dependent RNA helicase srmB [Shigella sonnei 53G]
 gi|323177294|gb|EFZ62882.1| ATP-dependent RNA helicase srmB [Escherichia coli 1180]
 gi|323184544|gb|EFZ69918.1| ATP-dependent RNA helicase srmB [Escherichia coli 1357]
 gi|323188309|gb|EFZ73601.1| ATP-dependent RNA helicase srmB [Escherichia coli RN587/1]
 gi|323936316|gb|EGB32607.1| DEAD/DEAH box helicase [Escherichia coli E1520]
 gi|323941161|gb|EGB37346.1| DEAD/DEAH box helicase [Escherichia coli E482]
 gi|323944576|gb|EGB40645.1| DEAD/DEAH box helicase [Escherichia coli H120]
 gi|323949230|gb|EGB45121.1| DEAD/DEAH box helicase [Escherichia coli H252]
 gi|323955812|gb|EGB51570.1| DEAD/DEAH box helicase [Escherichia coli H263]
 gi|323961191|gb|EGB56804.1| DEAD/DEAH box helicase [Escherichia coli H489]
 gi|323968024|gb|EGB63436.1| DEAD/DEAH box helicase [Escherichia coli M863]
 gi|323978394|gb|EGB73479.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
 gi|324008433|gb|EGB77652.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
 gi|324014379|gb|EGB83598.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
 gi|324020034|gb|EGB89253.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
 gi|324118214|gb|EGC12110.1| DEAD/DEAH box helicase [Escherichia coli E1167]
 gi|326340382|gb|EGD64186.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1125]
 gi|326345065|gb|EGD68809.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 str.
           1044]
 gi|327252286|gb|EGE63958.1| ATP-dependent RNA helicase srmB [Escherichia coli STEC_7v]
 gi|330912344|gb|EGH40854.1| ATP-dependent RNA helicase SrmB [Escherichia coli AA86]
 gi|331039998|gb|EGI12218.1| ATP-dependent RNA helicase SrmB [Escherichia coli H736]
 gi|331042872|gb|EGI15013.1| ATP-dependent RNA helicase SrmB [Escherichia coli M605]
 gi|331048888|gb|EGI20964.1| ATP-dependent RNA helicase SrmB [Escherichia coli M718]
 gi|331054386|gb|EGI26413.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA206]
 gi|331064521|gb|EGI36432.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA271]
 gi|331069299|gb|EGI40691.1| ATP-dependent RNA helicase SrmB [Escherichia coli TA280]
 gi|331075033|gb|EGI46353.1| ATP-dependent RNA helicase SrmB [Escherichia coli H591]
 gi|331079178|gb|EGI50380.1| ATP-dependent RNA helicase SrmB [Escherichia coli H299]
 gi|332089185|gb|EGI94292.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 155-74]
 gi|332100618|gb|EGJ03964.1| ATP-dependent RNA helicase SrmB [Shigella sp. D9]
 gi|332344451|gb|AEE57785.1| ATP-dependent RNA helicase SrmB [Escherichia coli UMNK88]
 gi|332753986|gb|EGJ84360.1| ATP-dependent RNA helicase srmB [Shigella flexneri 4343-70]
 gi|332755796|gb|EGJ86154.1| ATP-dependent RNA helicase srmB [Shigella flexneri 2747-71]
 gi|332761970|gb|EGJ92243.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-671]
 gi|332766578|gb|EGJ96783.1| srmB, DEAD-box RNA helicase [Shigella flexneri 2930-71]
 gi|333000838|gb|EGK20410.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-218]
 gi|333001669|gb|EGK21236.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-272]
 gi|333015945|gb|EGK35280.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-227]
 gi|333016831|gb|EGK36157.1| ATP-dependent RNA helicase srmB [Shigella flexneri K-304]
          Length = 444

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|324113103|gb|EGC07079.1| DEAD/DEAH box helicase [Escherichia fergusonii B253]
 gi|325496344|gb|EGC94203.1| ATP-dependent RNA helicase SrmB [Escherichia fergusonii ECD227]
          Length = 444

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|157107875|ref|XP_001649978.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108868632|gb|EAT32857.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 526

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 140/508 (27%), Positives = 215/508 (42%), Gaps = 44/508 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     I   + + G    T +QEA +   L  +D + +A+TGSGKT AF L + 
Sbjct: 7   KKFSDLGLKPWIANQMDKLGLRRPTPIQEACIPRILDGQDCIGAAKTGSGKTFAFALPIL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E       ++  AL + PT ELA Q+  +         V V V  GG     E +
Sbjct: 67  QRLSEEP------TSNFALVLTPTHELAYQIAEQFSVAGQPMSVKVCVITGGTDQLLEAQ 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ+  HIVV  PGRL  H+ G        ++ +V+DEAD +L   F +D+  I    PK
Sbjct: 121 RLQSRPHIVVAMPGRLASHLTGCNTYSFRAMQFLVVDEADRVLSGSFDEDLAAIDSFLPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KR+ L FSAT+   +   +           +  SE      +D R +L A  DRD  ++ 
Sbjct: 181 KRQNLFFSATLKEFMRENSVFPIGADAFEWSEESEVATVETLDQRYILCADYDRDMVLIE 240

Query: 238 ILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            LR     N     ++F +++      +  L    F  V L G L Q+ER  AL   +  
Sbjct: 241 TLRKFKEDNEEASVMIFTNSKKDCQVLSMTLNTIGFDNVCLHGFLRQKERVAALNRFKSK 300

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQN 351
             RV IATDVA+RG+D+P+++LV++  L   P   +HR GRT RAGRKG+++ +   P++
Sbjct: 301 HVRVLIATDVASRGLDIPNVQLVLNHRLPKIPNEYIHRVGRTARAGRKGLAISIFRFPRD 360

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL--------QDPLFLDSIQGDEKKM 403
           ++     +    N  +   P      I +R  +RI         +  + LD+   DE++ 
Sbjct: 361 LE-FLGEIESLINTKLTEHP------IDQRLVERIFMQVSVARREAEMNLDNKDFDERQH 413

Query: 404 VDVLLAKH----DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
                       DP++       +        E          R    D  RA      S
Sbjct: 414 NYRRKKWIEQGLDPDE-------MEAKWKQEKETRAAERKERLRKENEDRKRAAASEDRS 466

Query: 460 RDNFKGSSWFSLSVGSKQKAEARWLMPM 487
               K        V   +K + R  +  
Sbjct: 467 TSATKDER--FAGVAQSKKFKKRKFVTA 492


>gi|226290234|gb|EEH45718.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5
           [Paracoccidioides brasiliensis Pb18]
          Length = 1079

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 184/415 (44%), Gaps = 35/415 (8%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + + +  Y N TS+Q   +   +  +DV+  A+TGSGKT+AF L +   +  +      
Sbjct: 479 LDVIRKLNYENPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP-LEN 537

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P+ L + PTRELA Q+ +E +       +      GG  +  +  +L+ GA I+V T
Sbjct: 538 MEGPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCT 597

Query: 132 PGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           PGR+ D      G+  N+  +  VVLDEAD M D+GF   +  IL +   +R+ ++FSAT
Sbjct: 598 PGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFSAT 657

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
               +  LA+      V + +   +    +I     +     +   ++ +L    A +  
Sbjct: 658 FPRNMEALARKTLTKPVEIVVGGRSVVAPEITQIVEVRNEDTKFVRLLALLGDLYADDNN 717

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
               T   V R                                 G   + IAT VAARG+
Sbjct: 718 EDARTLIFVDRQEAAEWSAPRPYAQGLP---------------AGVFPILIATSVAARGL 762

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+  L+LVI+ +  ++ E+ +HR+GRTGRAG  G +V  + +  +R +  + +    S  
Sbjct: 763 DVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEVQERYSVDISKALKQS-- 820

Query: 369 WEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK-----MVDVLLAKHDPEKIAA 418
            +P P  EA+++           F++ ++  ++K          L + D E+ AA
Sbjct: 821 GQPVP--EAVQKM-------VNSFIEKVKAGKEKASGSGFGGKGLERLDQERDAA 866


>gi|150951242|ref|XP_001387532.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Scheffersomyces stipitis CBS 6054]
 gi|284018077|sp|A3GGE9|DBP4_PICST RecName: Full=ATP-dependent RNA helicase DBP4
 gi|149388432|gb|EAZ63509.2| ATP-dependent RNA helicase DBP4 (Helicase CA4) (Helicase UF1)
           [Pichia stipitis CBS 6054]
          Length = 765

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 201/463 (43%), Gaps = 11/463 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P  Q     L+E  +++LT +Q+  +   L+ +D++ +A+TGSGKT+AF + +
Sbjct: 46  ISQFSDLPITQETLRGLNESSFMSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPV 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L+   ++ +      AL ++PTRELAVQ    L  +         +  GG  V  E+
Sbjct: 106 VESLI--RNKITEHDGLAALIVSPTRELAVQTFEVLTKIGKYNTFSAGLVTGGKDVQYEK 163

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G+  S+L+ +VLDEAD  LD+GF+  I+ I+   P 
Sbjct: 164 ERVSRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPP 223

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
            R+ L+FSAT+S ++  LA+    +  R+ ++S+    +     D   + + L ++ + +
Sbjct: 224 TRQTLLFSATVSDSVKDLARLSLTNPKRIGVSSDQDVSATPESLDQYYIRIPLDEKLDVL 283

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     +VF S+   V    +        +  L      ++ S           
Sbjct: 284 WSFIKSHLKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRLETTVKFTQA 343

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR+G S+  ++P   
Sbjct: 344 QYACLFATDIVARGLDFPAIDWVVQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEE 403

Query: 353 QRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           +   +RL   +     +     S ++IR +      +DP+  +  Q         +  + 
Sbjct: 404 EGMLKRLENNKIEPKFMNIKQKSKKSIRPQLQSLCFKDPMIKNLGQRAFISYYKSVYIQK 463

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           D +      L   +          P   + G    ++   A +
Sbjct: 464 DKDVFKVEELPSEKYAASLGLPGAPKIKIKGGSSSKEKKNASR 506


>gi|196248942|ref|ZP_03147642.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
 gi|196211818|gb|EDY06577.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. G11MC16]
          Length = 436

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/427 (27%), Positives = 199/427 (46%), Gaps = 27/427 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P    + EA+    +   T +QE I+   LR + ++  +QTG+GKT A+ L +   
Sbjct: 6   FTRFPFQPFVIEAIQALRFYKPTEIQERIIPKALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E           A+  APTRELA Q+  E   +         +         +++  
Sbjct: 66  IDPERAEV------QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKA 119

Query: 122 ----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                   HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    P
Sbjct: 120 LEKLHVQPHIVIGTPGRINDFIREQALDVHTACTLVVDEADLMLDMGFITDVDQIAARMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y ++   + +  +   + +I++  + +   ++   + +
Sbjct: 180 KELQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGREKVKLLYD 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +    AIVF +TR         LAE   +V  L G+L+ +ER   +  +RD   + 
Sbjct: 240 VLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +     Q    
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAIA 359

Query: 358 RLFREANVSVV--------WEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           RL +   +S V        W+  P         + +E D   ++        ++   KK 
Sbjct: 360 RLEK-MGISFVHRDLVRGEWKELPPWNRRSKRASEKEDDLALLVAKLKKAKQVKPGYKKK 418

Query: 404 VDVLLAK 410
           +   L K
Sbjct: 419 LRAELEK 425


>gi|261332680|emb|CBH15675.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 604

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 193/477 (40%), Gaps = 14/477 (2%)

Query: 7   IPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  +  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +   
Sbjct: 116 LNPHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIVEIITRV 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   S   A+ I PTREL +Q+   L  L       V        + R++   +  +
Sbjct: 176 G--FRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAFKLVS 233

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            ++V                     +L  + +DEAD +LD GF DD+  I+   P++R+ 
Sbjct: 234 GMMVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPRQRQT 293

Query: 183 LMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT +  +     ++       + +    +      ++   V+     R   + + +
Sbjct: 294 FLFSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVLYHFV 353

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V  
Sbjct: 354 RRNLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLF 413

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P ++ ++  +   +P   +HR GRT RAGR+G ++  +    +   + L
Sbjct: 414 TTDVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRRGNALMFLLPQEKLFLKYL 473

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             +A+VSV       +  ++   A+++ Q       ++   +   +  L  +   ++   
Sbjct: 474 HDDAHVSVSEYTF-DLNKVKGNVAEQLEQLVSANYYLRSSARLAYEGYLLSYSSSQLKNV 532

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           F    L +            P   +         S+  +         K S    L+
Sbjct: 533 FDIHNLDLAAVAKGFALSEPPPLKLDLSQSAAHMSKKSRHEFRRMMESKDSQRRRLN 589


>gi|71734717|ref|YP_272808.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555270|gb|AAZ34481.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 479

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 26  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 85

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 86  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 140 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S ID     ++   R  A+V +L 
Sbjct: 200 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIDQIFYEISPEQRLEAVVKVLG 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 259 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 319 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 378

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 379 ELQKAPLNWQ 388



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
            +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++ L
Sbjct: 405 MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERL 464

Query: 522 RRTVKLDKGIQLKYL 536
                  K ++++ L
Sbjct: 465 NNGKIKGKSLRVRIL 479


>gi|71747626|ref|XP_822868.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832536|gb|EAN78040.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 604

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/477 (21%), Positives = 192/477 (40%), Gaps = 14/477 (2%)

Query: 7   IPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +   I  AL  +  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +   
Sbjct: 116 LNPHIVTALENDFKFQELTGIQGRCIPAALAGRDLLAEAKTGSGKTLAFLIPIVEIITRV 175

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F   S   A+ I PTREL +Q+   L  L       V        + R++   +  +
Sbjct: 176 G--FRQRSGTAAIIIGPTRELCLQIEGVLLKLLKHFNGSVTFLCCIGGISRKQEAFKLVS 233

Query: 126 HIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            ++V                     +L  + +DEAD +LD GF DD+  I+   P++R+ 
Sbjct: 234 GMMVVMATPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEDDMREIVSLLPRQRQT 293

Query: 183 LMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +FSAT +  +     ++       + +    +      ++   V+     R   + + +
Sbjct: 294 FLFSATQTTRVEQLARVSFYRPPLFISMKRKEDKATVDTLEQGYVICPSQQRLLVLYHFV 353

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V  
Sbjct: 354 RRNLKKKVIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVLF 413

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++  +    +   + L
Sbjct: 414 TTDVAARGLDIPQVDWIVQFDPPDDPVKYVHRVGRTARAGRTGNALMFLLPQEKLFLKYL 473

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             +A+VSV       +  ++   A+++ Q       ++   +   +  L  +   ++   
Sbjct: 474 HDDAHVSVSEYTF-DLNKVKGNVAEQLEQLVSANYYLRSSARLAYEGYLLSYSSSQLKNV 532

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
           F    L +            P   +         S+  +         K S    L+
Sbjct: 533 FDIHNLDLAAVAKGFALSEPPPLKLDLSQSAAHMSKKSRHEFRRMMESKDSQRRRLN 589


>gi|317404068|gb|EFV84523.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
          Length = 462

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 129/391 (32%), Positives = 199/391 (50%), Gaps = 12/391 (3%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
              G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L           AP
Sbjct: 20  QSLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQKLDPAR------LAP 73

Query: 76  LALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
            AL + PTRELA QV +EL  L  +   V +    GG +   +   L  GAHIVVGTPGR
Sbjct: 74  QALLLCPTRELADQVAQELRRLARQIANVKILTLCGGAAARPQAESLARGAHIVVGTPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           + DH+    L++S L  +VLDEAD M+D+GF DDI  I    P KR+ L+FSAT    I 
Sbjct: 134 IQDHLERGSLDLSGLTTLVLDEADRMVDMGFYDDIVAIASHCPAKRQTLLFSATYPDNIR 193

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L+  + ++   V         S I+     +  ++R +A+  +L +    + + FC+T+
Sbjct: 194 KLSARFLRNPAEV-KVEAQHDASRIEQIFYEIDPAERLDAVATLLAHFRPVSTLAFCNTK 252

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                  + L       +AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L 
Sbjct: 253 IRSHDLVERLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLG 312

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
            VI+ +++ + E  +HR GR+GR  +KG+++ +   +  R A  + +     + W    S
Sbjct: 313 AVINVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTWGDLKS 372

Query: 375 VEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +       A R L+ P+    IQG +K  + 
Sbjct: 373 LRP----KADRPLRAPMVTLCIQGGKKDKLR 399



 Score = 48.4 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 66/209 (31%), Gaps = 19/209 (9%)

Query: 337 RAGRKGMSVFVIPQNMQRRAER--LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           R    G+S   +  ++++R     L + AN S     A  V A R  D Q +        
Sbjct: 261 RLQAAGISALALNGDLEQRERDEILIQFANQSCAVLVATDVAA-RGLDIQNLGAVINVDV 319

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLR---IHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
           +   +          + D + +A        +  A L    +  P++    +       R
Sbjct: 320 TKDTEVHVHRIGRSGRGDQKGLALSLCSPDEMRWANLIEQYQGAPLTWGDLKSLRPKADR 379

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
             +                +  G K K     L+  L    G+  + +G I +     +V
Sbjct: 380 PLRA---------PMVTLCIQGGKKDKLRPGDLLGALTGDGGLAFEQVGKINITEFNAYV 430

Query: 512 ----EVSADGVDLLRRTVKLDKGIQLKYL 536
               +++      L  +    +  +++YL
Sbjct: 431 ALDRKIAKQAFSRLSNSNIKGRRFRMRYL 459


>gi|254569806|ref|XP_002492013.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|238031810|emb|CAY69733.1| RNA helicase in the DEAD-box family, involved in RNA isomerization
           at the 5' splice site [Pichia pastoris GS115]
 gi|328351494|emb|CCA37893.1| ATP-dependent RNA helicase DDX23/PRP28 [Pichia pastoris CBS 7435]
          Length = 555

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 12/378 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            NI + I + +   G+   T +Q A +   L  +D++  A+TGSGKT+A+ +   + LL 
Sbjct: 161 SNIKKEILDIVHSLGFDEPTPIQRASIPLALASRDLIGIAKTGSGKTLAYIIPALNYLLQ 220

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S    P  L + PTRELA+QV +E +    K  + +   IGG S+      +  G
Sbjct: 221 LPHLESGDQIPQVLILVPTRELALQVEKEFKKFTVKLDLNIISLIGGHSIEENVNSISRG 280

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV TPGRL D    K ++++    VVLDEAD M+D+GF   +  IL   P  +    
Sbjct: 281 CEIVVATPGRLLDCYERKMISLAECYYVVLDEADRMIDMGFEVQVLKILKLLPTDQNRFT 340

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE---------NRQHSDIDYRAVLVALSDRDNAI 235
                +   T       +   +  +                +           + + N +
Sbjct: 341 SRPRNTFMFTATMSTAIQKITKNYLNQPGTLTVGELGTVVDTVTQEVRYFPNENAKLNHL 400

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            +IL        I     +       ++          + G  +Q +R  A+Q +R G+ 
Sbjct: 401 FSILPSFRPPIIIFVNYKKTCEFLQNQLSKNTALSSTVIHGSKNQDQRELAIQNLRSGKI 460

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR- 354
            V IATD+A RGID+P++ LV++ ++++  ++  HR GRTGRAG +G S+  +       
Sbjct: 461 DVLIATDLAGRGIDIPNVSLVVNFQMANGLDSYTHRIGRTGRAGNRGYSITYLGPEDSEI 520

Query: 355 --RAERLFREANVSVVWE 370
                +L  ++   +  E
Sbjct: 521 FSEFRKLLVKSGSKIPAE 538


>gi|229588539|ref|YP_002870658.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens SBW25]
 gi|229360405|emb|CAY47262.1| ATP-dependent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 407

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 184/372 (49%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL   
Sbjct: 25  LAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTP 84

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 85  PPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARH 144

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 145 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKAERQT 204

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I + N    +++     VA +D+   + N++  +
Sbjct: 205 LLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLYNLVNDN 264

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 265 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 324

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 325 VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIETL 384

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 385 LGRKISCETPPT 396


>gi|150863984|ref|XP_001382645.2| pre-mRNA processing RNA-helicase [Scheffersomyces stipitis CBS
           6054]
 gi|158514823|sp|A3LQ55|PRP5_PICST RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|149385240|gb|ABN64616.2| pre-mRNA processing RNA-helicase [Scheffersomyces stipitis CBS
           6054]
          Length = 875

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 106/414 (25%), Positives = 185/414 (44%), Gaps = 34/414 (8%)

Query: 5   ENIPQVIGEALSERG--------------YVNLTSVQEAILNPDLREKDVLVSAQTGSGK 50
            N+P+ + +  S  G              Y   TS+Q   L   +  +D++  A+TGSGK
Sbjct: 265 SNVPRPVLKW-SHLGLPASYMNIIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSGK 323

Query: 51  TVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
           T++F L +   +  + D       P+ L ++PTRELAVQ+ +E+     + G+    C G
Sbjct: 324 TLSFVLPMLRHIQDQPD-LKDGEGPIGLILSPTRELAVQIHKEITNFTKRLGMTACCCYG 382

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           G  +  +  +L+ GA I+VGTPGR+ +      G+  N+  +  VVLDEAD M DLGF  
Sbjct: 383 GSPIESQIAELKKGAQILVGTPGRIIELLAANSGRITNLRRVTYVVLDEADRMFDLGFEP 442

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            +  I      + + ++FSAT    I  LAK    + + + +   +   S+I  +  L  
Sbjct: 443 QVTKISSQIRPESQTVLFSATFPRKIELLAKRLLYNPLEIIVGGISVVASEITQKVELFE 502

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLA-------------EHLFQVVAL 274
             +                 +    ++ S                       H    +  
Sbjct: 503 KGESSQLEDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVKLLGSNHPCLTIHG 562

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
             +   ++ +      +D    + IAT +AARG+D+  L+LVI+ +  ++ E+ +HR GR
Sbjct: 563 GKDQIDRKYAIKEFSSKDSGVDILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGR 622

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVS-VVWEPAPS-VEAIRERDAQRI 386
           TGRAG KG ++  +  + +R    L R   +S +  +  PS +  IR +  +++
Sbjct: 623 TGRAGMKGTAITFVSSDQERSVTDLVRAMTMSKIPEDEIPSRLIEIRNQFLEKV 676


>gi|30353749|gb|AAH51703.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 167/372 (44%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + +++   G V  T +Q       L+  D++V AQTG+GKT+++ +     L 
Sbjct: 227 FQQYPD-LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLD 285

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+ V  E    Y+  G+      GG + + +  D+  
Sbjct: 286 SQPISREQRNGPGMLVLTPTRELALHVEAECSK-YSYKGLKSICIYGGRNRNGQIEDISK 344

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTV 404

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA +Y +   +           + +    ++    ++       +   
Sbjct: 405 MTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENM 464

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S +      +           +L G   Q ++  A++  + G  ++ I T
Sbjct: 465 SPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITT 524

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ +RG+DL D+  V + +   N +  +HR G  GR G+ G SV +I Q   + A  L +
Sbjct: 525 DIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 585 ILDRANQSVPED 596


>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
 gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
          Length = 782

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 104/444 (23%), Positives = 179/444 (40%), Gaps = 24/444 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L    
Sbjct: 3   LNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERL---- 58

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     
Sbjct: 59  QRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPD 118

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+M+MFS
Sbjct: 119 VIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVMFS 178

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   +   A+        +R+++ S+      + +             ++        
Sbjct: 179 ATLPKLLVDFARAGLSDPVLIRLDVESKLPDSLALKFLYCRPDDRYTSLIVLLKYVIPEK 238

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF  T+  V   + +L +      ++   L    R          +  V I TDVA
Sbjct: 239 SQTVVFAGTQHHVELISFILTQSNISNTSVYSSLDPAARKINTAKFVSKKVSVLIVTDVA 298

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+      P+  +HR GR  RAGR G +  +   +       L    N
Sbjct: 299 ARGIDIPSLDYVINVHFPGKPKLFVHRVGRCARAGRSGTAFSIFSTDDTAHLLDLHLFLN 358

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
                                 + D + + ++  D  +   + + +       AG LR  
Sbjct: 359 RPFN------------------IDDNIAIGTVPQDLLEEEHLTVTEIKKSHHIAGVLRTS 400

Query: 425 RAGLCAPEEITPVSLVSGRDRFRD 448
                      PV+      R + 
Sbjct: 401 ENAYKKYLSSRPVASTDANSRVKK 424


>gi|161784285|sp|Q5BCU6|PRP28_EMENI RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|259486970|tpe|CBF85264.1| TPA: Pre-mRNA-splicing ATP-dependent RNA helicase prp28 (EC
           3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BCU6]
           [Aspergillus nidulans FGSC A4]
          Length = 782

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/417 (28%), Positives = 205/417 (49%), Gaps = 36/417 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++   +P+ + E +   GY   T +Q A +   ++ +D++  A TGSGKT AF L L
Sbjct: 345 MRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPL 404

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +      G  V   +GG S 
Sbjct: 405 LCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSF 464

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 465 EEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 524

Query: 175 SSP-------------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           + P                         + R+ +M++AT+  A+  +A+ Y +    V I
Sbjct: 525 ALPVTNEKPDTEEAEDSSAMSRHLGSKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTI 584

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH 267
            S       ++ R  ++A  D+    +  +          IVF + + +     + + + 
Sbjct: 585 GSAGEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPPIIVFVNIKRNCDAIAREIKQW 644

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F  V L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LVI+  ++++ E+
Sbjct: 645 GFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVINFNMATSIES 704

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
             HR GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 705 YTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPEELRKHEAAQSK 761


>gi|322502575|emb|CBZ37658.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 803

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/530 (23%), Positives = 213/530 (40%), Gaps = 44/530 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F N+ + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + + +
Sbjct: 24  FQSF-NLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL A     +       L ++PTREL++Q+ R    L     +  A  +GG S+ ++   
Sbjct: 83  TLKAH----AKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFEL 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   +VV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 139 LASNPDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESC 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--------D 232
           +  +FSAT+   +         + V + + SE +    +   A LV   ++         
Sbjct: 199 QRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLK 258

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +           A++F  ++  V     +L  +     A+ G++ Q+ R  A++    
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 319 RETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFED 378

Query: 353 QRRAERLFREANVSVVWEPAPS---------------VEAIR-ERDAQRIL--QDPLFLD 394
                 L +     +   P P                 E I+ E D  + L   D     
Sbjct: 379 FPYYIDLLQFIGRPLQSAPVPGDLLFTPDNGCYGRLPEEDIQLELDFLKRLHENDVEVRS 438

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             +  E         K  P   A    R  +           +    G  R R D   F 
Sbjct: 439 MARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLERVGSTRVRADEARFD 498

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQK---AEARWLMPMLCR----SSGINRQ 497
           +               L +GSK+K            L R      G  ++
Sbjct: 499 LKRFKPKE------LFLEIGSKEKLFEIRPPETAQSLARSADAEGGATKR 542


>gi|146099084|ref|XP_001468551.1| ATP-dependent RNA helicase [Leishmania infantum]
 gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
          Length = 803

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/530 (23%), Positives = 213/530 (40%), Gaps = 44/530 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F N+ + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + + +
Sbjct: 24  FQSF-NLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL A     +       L ++PTREL++Q+ R    L     +  A  +GG S+ ++   
Sbjct: 83  TLKAH----AKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFEL 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   +VV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 139 LASNPDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESC 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--------D 232
           +  +FSAT+   +         + V + + SE +    +   A LV   ++         
Sbjct: 199 QRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVLLK 258

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +           A++F  ++  V     +L  +     A+ G++ Q+ R  A++    
Sbjct: 259 RVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSFAK 318

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 319 RETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFED 378

Query: 353 QRRAERLFREANVSVVWEPAPS---------------VEAIR-ERDAQRIL--QDPLFLD 394
                 L +     +   P P                 E I+ E D  + L   D     
Sbjct: 379 FPYYIDLLQFIGRPLQSAPVPGDLLFTPDNGCYGRLPEEDIQLELDFLKRLHENDVEVRS 438

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             +  E         K  P   A    R  +           +    G  R R D   F 
Sbjct: 439 MARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLERVGSTRVRADEARFD 498

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQK---AEARWLMPMLCR----SSGINRQ 497
           +               L +GSK+K            L R      G  ++
Sbjct: 499 LKRFKPKE------LFLEIGSKEKLFEIRPPETAQSLARSADAEGGATKR 542


>gi|330886294|gb|EGH20195.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. mori str.
           301020]
          Length = 459

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I+  +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIKQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
            +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++ L
Sbjct: 385 MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERL 444

Query: 522 RRTVKLDKGIQLKYL 536
                  K ++++ L
Sbjct: 445 NNGKIKGKSLRVRIL 459


>gi|330994757|ref|ZP_08318679.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758018|gb|EGG74540.1| Cold-shock DEAD box protein A-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 376

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 127/364 (34%), Positives = 194/364 (53%), Gaps = 4/364 (1%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           +  AL+  G    +++Q A++ P +  +DV   A TGSGKTVAF   + S L+A   R +
Sbjct: 17  VVAALARMGLQAPSAIQGAVIPPVMAGRDVEARAGTGSGKTVAFAAPIVSMLMA---RET 73

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
             S    L +APTRELA Q+   L  L    G+ V    GG +   + R L +G  IVVG
Sbjct: 74  DNSRVRCLVLAPTRELAGQIAGVLRGLARGGGLRVMQATGGTARVAQARTLADGTAIVVG 133

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ D + G  L++S +   VLDEAD MLD GF +++  +  + P + + L+FSAT+ 
Sbjct: 134 TPGRVTDLVHGGELDLSAVGIFVLDEADRMLDPGFAEEMLALAAALPPRHQTLLFSATLP 193

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           PA+  LA        RV++A E+     I   A+ V +  +  A +  LR +G +  +VF
Sbjct: 194 PAMAELAARLLHRPTRVSMAVEDAPAPRIAQYAIFVPMRHKTQATLACLRQYGTQRVMVF 253

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
             TR       + ++  +   +A+ G+ SQ  R   L+  R GR  V +ATDV ARGID+
Sbjct: 254 VRTRQEADGVARAISALVPA-IAIHGDHSQARRERMLRDFRQGRVGVLVATDVMARGIDI 312

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
            D+ LVI+ ++   PE+ +HR GRT RAGR+G++V +     ++    + R     +   
Sbjct: 313 DDVALVINHDIPPQPESYVHRIGRTARAGRRGVAVALCAPEERQALREIERLTGQRIRIA 372

Query: 371 PAPS 374
             P 
Sbjct: 373 SLPE 376


>gi|294813953|ref|ZP_06772596.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326442363|ref|ZP_08217097.1| putative ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294326552|gb|EFG08195.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 757

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 150/582 (25%), Positives = 250/582 (42%), Gaps = 42/582 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 79  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 138

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 139 RL---AQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 195

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 196 LERGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGG 255

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I+TL K Y  + V   + S     + + +  ++V    +D A V    
Sbjct: 256 QRMLFSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVV--KPKDKAPVTAAI 313

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +A
Sbjct: 314 AARKGRTIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVA 373

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL 
Sbjct: 374 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRLM 433

Query: 361 REANVSVVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +A V              P V  I    +   +Q     ++ +  E+++ D+       
Sbjct: 434 EDAGVEASRHIVGGAGAFDPEVAEITGARSLTEVQADSANNAAKQAEREVADLTRQ---- 489

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSV 473
                   RI R  +   EE   +   + R+R  D   A      +      ++  +   
Sbjct: 490 ------LERIQRRAVELREEADRLVARAARERGEDPEAAVAEVAEAAGAELEAAVAAAKA 543

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT--VKLDKGI 531
            ++Q  E R             R+  G        +F      G D   R+   + D+G 
Sbjct: 544 -AEQPVERRD------DRGNFERR--GR-------SFDRRDERGDDRGGRSFERRDDRGG 587

Query: 532 QLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
             +        FRG    G   +   D     F+      ++
Sbjct: 588 SFRRDDRGGSSFRGDDRGGRSFERRDDRGGSSFRGDDRGGRS 629


>gi|254821954|ref|ZP_05226955.1| RhlE [Mycobacterium intracellulare ATCC 13950]
          Length = 452

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 127/374 (33%), Positives = 183/374 (48%), Gaps = 9/374 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL+E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + +    
Sbjct: 19  DEIVRALAEKGIESPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITSGTAA 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERRDLQ 122
                 P AL + PTREL +QV  +L              + V    GG     +   L+
Sbjct: 79  RPLNGTPRALIVVPTRELCLQVTDDLALAAKHLTADEGRRLSVVPIYGGRPYEAQIEALR 138

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ 
Sbjct: 139 AGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPVDRQS 198

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R         H      A      D+   +  IL+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYAYRAHALDKVELVSRILQ 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    ++F  T+ +  +    LAE  F V A+ G+L Q  R  AL+  R G   V +A
Sbjct: 259 AEGRGATMIFTRTKRTAQKVADELAERGFAVGAVHGDLGQVAREKALKAFRTGDIDVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  +   R   + 
Sbjct: 319 TDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDELTRWALID 378

Query: 361 REANVSVVWEPAPS 374
           +   +    EPA +
Sbjct: 379 KALGLD-NPEPAET 391


>gi|170767442|ref|ZP_02901895.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
 gi|170123776|gb|EDS92707.1| ATP-dependent RNA helicase SrmB [Escherichia albertii TW07627]
          Length = 444

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 183/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+ + +  +  L
Sbjct: 376 IDELRPKTRAPSEKQSGKPSKKVL 399


>gi|156083174|ref|XP_001609071.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
           containing protein [Babesia bovis T2Bo]
 gi|154796321|gb|EDO05503.1| DEAD/DEAH box helicase and  helicase conserved C-terminal domain
           containing protein [Babesia bovis]
          Length = 454

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/352 (31%), Positives = 186/352 (52%), Gaps = 10/352 (2%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
           + T +Q A +   L  +DV+  A TGSGKT AF + +   LL +  R         + +A
Sbjct: 54  HPTPIQMAAIPHALNGRDVIGLAVTGSGKTGAFTIPVLHHLLEDVQRI------YCVVLA 107

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           P+REL  Q+  +   L +   + V V IGGV +  +   L    H++V +PGRL DH+  
Sbjct: 108 PSRELCEQIAEQFRALSSSIALQVCVIIGGVDMVHQASALAKRPHVIVASPGRLADHVEN 167

Query: 142 KG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
               ++S +K +V+DEAD +L   F ++++ I+ + P +R+  +FSAT++  ++ L K  
Sbjct: 168 TKGFSLSTVKKLVIDEADRLLSQDFDEELDKIIHAMPTERQTFLFSATMTKKLSKLQKMA 227

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
            KD + V +  +     ++D R +LV    +   +  +L Y+  + AIVFC T     R 
Sbjct: 228 LKDPISVQVDDKYSTAENLDQRFLLVPQKYKYTYLAALLWYYATRTAIVFCKTCDGAQRC 287

Query: 261 TKVLA---EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
              L          V L G+++Q +RS ALQ+ + G   + +AT+V  RG+DLP +ELVI
Sbjct: 288 AAYLKGLKFTTICKVCLHGKMTQADRSRALQIFKTGSVNILVATEVGGRGLDLPMVELVI 347

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++    ++ +HR GRT RAGR G+++ V+ Q      +R+    N  +  
Sbjct: 348 NFDIPECSKDYIHRVGRTARAGRSGLALTVVTQYDVELFQRIELALNKKLEE 399


>gi|329663131|ref|NP_001192982.1| ATP-dependent RNA helicase DDX50 [Bos taurus]
 gi|297491479|ref|XP_002698910.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
 gi|296472173|gb|DAA14288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Bos taurus]
          Length = 737

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 139 FSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 198

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 199 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDVTRKLS--VACFYGGTSYQSQINHI 256

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E IL  S K   
Sbjct: 257 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDILHESYKTDS 316

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 317 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 376

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 377 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 435

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 436 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 495

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 496 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 526


>gi|84996425|ref|XP_952934.1| DEAD-family helicase [Theileria annulata strain Ankara]
 gi|65303931|emb|CAI76310.1| DEAD-family helicase, putative [Theileria annulata]
          Length = 757

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 180/379 (47%), Gaps = 27/379 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+ + GY+  T +Q   +   L  +D++  A TGSGKT AF L + + +  L 
Sbjct: 346 LPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTYVKKLP 405

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +AP+RELA+Q+  E     A         +GG +   +  +L+ G
Sbjct: 406 PLDDETSLDGPYALILAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAESQAFELRKG 465

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             I++GTPGR+ D +      +S    V+LDEAD M+D+GF D +++ILD  P       
Sbjct: 466 CEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNLKDR 525

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R   MFSAT+ PA+  L K Y +    ++I       + I 
Sbjct: 526 DESSALEQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKTSIT 585

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            +   V    +    +           I+F + + +    TK + +  ++ V+L G  +Q
Sbjct: 586 QQLDFV-QESKKTRHLEETLETLEPPIIIFVNLKKNTDVITKHITKIGYRAVSLHGGKTQ 644

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R +AL   + G   + +ATDV  RG+D+  +++VI+ ++  + +   HR GRTGRAG 
Sbjct: 645 ESREDALNKFKSGAYDILVATDVVGRGLDVEGIKVVINYDMPKDIQTYTHRIGRTGRAGL 704

Query: 341 KGMSVFVIPQNMQRRAERL 359
           KG+S+  +          L
Sbjct: 705 KGLSISFVTDADVDLFYDL 723


>gi|304385240|ref|ZP_07367585.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
 gi|304328447|gb|EFL95668.1| ATP-dependent RNA helicase DbpA [Pediococcus acidilactici DSM
           20284]
          Length = 453

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 109/390 (27%), Positives = 184/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   + +AL + G+V  T VQE ++      + V+  +QTGSGKT AF L +
Sbjct: 1   MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVCIGGVSVH 115
            + +          +A  A+   P+RELA Q+    + L A +     +     G     
Sbjct: 61  FNQIDPAK------NAIQAVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +   +   IV+GTPGR+ D ++ + LN   ++ +V+DEAD  LD+GF   ++ I  S
Sbjct: 115 QIAKLEHHQPAIVIGTPGRVLDLLQARALNFRQVQYLVIDEADMTLDMGFLSAVDQIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+  +ML+FSATI   +    + Y K      I         I    +     D++N I
Sbjct: 175 MPENLQMLVFSATIPQQLNVFLQKYMKHPAIEEIPVATTISPTIKNILISTKSQDKNNLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +T+      T  L      V  + G +  +ER   ++ +   R 
Sbjct: 235 YQLLTMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  + LVI+ ++ ++ E  +HR GRTGR G  G ++ +   N +  
Sbjct: 295 QYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAE 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
              + +   V  + +   + E +   D QR
Sbjct: 355 VAEVEK-MGVKFIPQQLRNHELVDTYDRQR 383


>gi|281346962|gb|EFB22546.1| hypothetical protein PANDA_001615 [Ailuropoda melanoleuca]
          Length = 710

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 112 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 171

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 172 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 229

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 230 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 289

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 290 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 349

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 350 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 408

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 409 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 468

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 469 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 499


>gi|146300207|ref|YP_001194798.1| DEAD/DEAH box helicase domain-containing protein [Flavobacterium
           johnsoniae UW101]
 gi|146154625|gb|ABQ05479.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
           UW101]
          Length = 450

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 193/423 (45%), Gaps = 19/423 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P+ + +A+ E G+V  T +QE   +  +  +D++  AQTG+GKT A+    
Sbjct: 1   MSTFEKFNLPKSLQKAVDELGFVTPTPIQEKSFSVIMSGRDMMGIAQTGTGKTFAY---- 56

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               L +  +F+  + P  + + PTREL VQV  E+E L     V      GGV+++ ++
Sbjct: 57  -LLPLLKLYKFTHTNTPKIVVLVPTRELVVQVVEEVEKLTKYMSVKTLGIYGGVNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  I+VGTPGR  D      +     + +V+DE DEML+LGFR  +  +      
Sbjct: 116 KAVYEGVDILVGTPGRTMDLALDAVVRFDETQKLVIDEFDEMLNLGFRPQLTSLFAMMKT 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDN--AI 235
           KR+ ++FSAT++  +  +  +Y      V +A        I      +   + + N    
Sbjct: 176 KRQNILFSATMTDEVDDILNDYFDFPEEVTLAPSGTPLEKITQFTYNVPNFNTKVNLLKH 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +        +  +   + + S   F ++      Q   +    SQ  R + +   ++G  
Sbjct: 236 LLETDESMNRILVFVNNKKISDMLFNRIDELFEGQFGVIHSNKSQNYRLSTMAEFQEGNL 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQR 354
           R  I TDV ARG+D+ ++  VI+ EL   PE  +HR GRTGRA   G ++  + P+  + 
Sbjct: 296 RGLITTDVMARGLDISNITHVINFELPEEPELYMHRIGRTGRADATGTAISFVTPREEEF 355

Query: 355 RAERLF---REANVSVVWEPAPSVEAIRERDAQR-----ILQDPLFLDSIQGDEKKMVDV 406
           + E      +E  +S   E     E + E +  +     +L+ P         EK   + 
Sbjct: 356 KIETELLMDQELKISDFPEEVEISEKLIEAEKDKLPRKFLLKKPKLEGDGAFHEKSKKNQ 415

Query: 407 LLA 409
            + 
Sbjct: 416 KIN 418


>gi|11499835|ref|NP_071079.1| DEAD-box ATP dependent DNA helicase [Archaeoglobus fulgidus DSM
           4304]
 gi|2648271|gb|AAB89003.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 368

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 193/367 (52%), Gaps = 11/367 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALAS 60
           FE++   +    A+  +G+   T +Q  I+       KD++  AQTGSGKT AF L +  
Sbjct: 9   FEDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILD 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +   +          A+ I PTRELA+QV  E+E L     V V    GG  +  +   
Sbjct: 69  LVDERSKDV------QAIVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIER 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVVGTPGR+ DH+  + L++  ++  VLDEAD MLD+GF DDIE IL  +  +R
Sbjct: 123 LRKGVQIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAER 182

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R+LMFSAT+ P +  LA+ Y +D   V + S+    +       +     +    +  + 
Sbjct: 183 RVLMFSATMPPEVLRLARRYMRDYEVVRVHSKITPENVEHRCLKVNPE--KRFEHLCRIL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC T+       + L    ++  AL+G++ Q +R + L+  R G  RV +A
Sbjct: 241 DENNFYGIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ DL  V++  +  +PE  +HR+GRTGR G++G ++  +     R+ + + 
Sbjct: 301 TDVAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKLKIIE 360

Query: 361 REANVSV 367
           R A V  
Sbjct: 361 RTAKVRF 367


>gi|146304259|ref|YP_001191575.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           sedula DSM 5348]
 gi|145702509|gb|ABP95651.1| DEAD/DEAH box helicase domain protein [Metallosphaera sedula DSM
           5348]
          Length = 348

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 20/366 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+ +   +  AL++  Y   T VQE  +   +  + V+V A+TGSGKT ++ + +    
Sbjct: 1   MFDQLSDQLKRALADINYQRPTKVQEIAIPVFMNGESVIVQAKTGSGKTASYLIPVLERY 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                         AL + PTRELA QV  E + L       + V IGGV   R+ R+  
Sbjct: 61  HN------------ALILVPTRELAEQVAYEAKRLGKYKRTSIGVIIGGVGYDRQERES- 107

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + I+VGTPGR+ D      L++S  K  ++DE D MLD+GF DD+  IL  +  +   
Sbjct: 108 -DSDIIVGTPGRILDLWGRGTLDLSRFKLAIVDEVDRMLDMGFIDDVRMILSKTSAENFG 166

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +           +             +  +     Y              V  L   
Sbjct: 167 FFSATVPPEVKELAEEFSPNARFLKVDEYKPVEIDHEFYPVRDNWHEK-----VTKLLKD 221

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AIVF +T+A        +++ +   +   G++SQ  R   L   + G + + I+TD
Sbjct: 222 VNGKAIVFTNTKARAEALYDNISDRVSTSLLH-GDMSQGSRRRNLMSFKRGDSDILISTD 280

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ D+E V++ +L  + E  +HR GRTGR GRKG +V    +  +   +R+   
Sbjct: 281 LAARGIDVIDVEQVVNFDLPRDVETYIHRVGRTGRMGRKGRAVSYYTRREEEMVQRIRSI 340

Query: 363 ANVSVV 368
              +++
Sbjct: 341 IKSTII 346


>gi|330811536|ref|YP_004355998.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379644|gb|AEA70994.1| ATP-dependent RNA helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 487

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/372 (30%), Positives = 185/372 (49%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL   
Sbjct: 105 LAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTP 164

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 165 PPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKHLEARH 224

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 225 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 284

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I +EN    +++     VA +D+   + N++  +
Sbjct: 285 LLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLYNLVNDN 344

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 345 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 404

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 405 VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLPSIEAL 464

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 465 LGKKINCETPPT 476


>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
 gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
          Length = 428

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 183/380 (48%), Gaps = 7/380 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q  ++   L E+D++  A TGSGKT AF L L   +  +    
Sbjct: 18  PLMARLTELEYQQPTPIQAQVIPSVLAERDLIAGANTGSGKTAAFALPLLQKIHEDAPLD 77

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            R    +    L + PTRELA QV   ++         +      GGVSV+ + + L+ G
Sbjct: 78  RRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+
Sbjct: 138 TDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL      D + V + S N        R   V    +   + ++++ H  
Sbjct: 198 FSATFPEQVKTLTHELLNDPIEVQLQSANASTL--VQRVFEVEKGRKTALLAHLIQQHEW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L +         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 256 RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I          + ++  
Sbjct: 316 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFTIIEKKNK 375

Query: 365 VSVVWEPAPSVEAIRERDAQ 384
           + +  E     E   E  A+
Sbjct: 376 IRLEREQIEGFEVDAEATAE 395


>gi|325271305|ref|ZP_08137840.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
 gi|324103564|gb|EGC00876.1| ATP-dependent RNA helicase DbpA [Pseudomonas sp. TJI-51]
          Length = 461

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 202/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY  +T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSTAMLANLDALGYAAMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ ++  +V + S +  +   + R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQI-EQRFIEIDPEQRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGLAVSLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
           +     + W+   S++
Sbjct: 361 QLQKSPLRWDQLDSLK 376



 Score = 60.0 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 24/75 (32%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G        S   ++ G K K     ++  L   +GI  + +G I +     FV V 
Sbjct: 376 KSKGGEPLLPVMSTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVE 435

Query: 515 ADGVDLLRRTVKLDK 529
                   + +   K
Sbjct: 436 RALAKQAMQRLNSGK 450


>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 449

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/379 (31%), Positives = 194/379 (51%), Gaps = 6/379 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +   L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L  
Sbjct: 11  TFADLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+ D+  P   P+ L +APTRELA+Q+   +E L     + V    GGVS   + + 
Sbjct: 71  RL-AQQDKARPG-HPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV  PGRL D +    +++  ++  VLDEAD M DLGF   +  IL ++P++ 
Sbjct: 129 LKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPGVRRILRATPQRG 188

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   + TL K +  + ++ ++         + +R  +VA     + IV  L 
Sbjct: 189 QRLLFSATLDNGVDTLVKEFLHNPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRLA 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  + F  T+    R  + L +     V L G +SQ+ R  A++    G+  V +A
Sbjct: 249 SGEGQRIL-FTRTKHLARRLARKLVQAGIPAVELQGNMSQKARERAMRAFSTGQVHVMVA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L 
Sbjct: 308 TDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLL 367

Query: 361 REANVSVVWEPA-PSVEAI 378
           ++A +    E   P  +A+
Sbjct: 368 KKARIRADIERIRPDDDAV 386


>gi|298484971|ref|ZP_07003069.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160525|gb|EFI01548.1| ATP-independent RNA helicase DbpA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 473

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 80  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 134 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 194 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 253 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 313 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 372

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 373 ELQKAPLNWQ 382



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
            +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++ L
Sbjct: 399 MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERL 458

Query: 522 RRTVKLDKGIQLKYL 536
                  K ++++ L
Sbjct: 459 NNGKIKGKSLRVRIL 473


>gi|296504780|ref|YP_003666480.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
 gi|296325832|gb|ADH08760.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
          Length = 457

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|289624121|ref|ZP_06457075.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647605|ref|ZP_06478948.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320321939|gb|EFW78035.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330955|gb|EFW86929.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330865833|gb|EGH00542.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330872189|gb|EGH06338.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 459

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
            +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++ L
Sbjct: 385 MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERL 444

Query: 522 RRTVKLDKGIQLKYL 536
                  K ++++ L
Sbjct: 445 NNGKIKGKSLRVRIL 459


>gi|295675110|ref|YP_003603634.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
 gi|295434953|gb|ADG14123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
          Length = 467

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 135/400 (33%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L++ GYV +T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 16  LPPAMLANLTQLGYVEMTPIQAASLPIALGGHDLIAQAKTGSGKTAAFSLALLARLD--- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 73  ---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+F
Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ +     +    +E    S I  R   V   +R +A+  +L ++   
Sbjct: 190 SATYPEGIAKLSQQF-LRNPKEVKLAERHDDSKIRQRFYEVTEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE   HR GRTGRA ++G ++ +   +   R   + +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIEQVHKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     ++A         L  P+    I G  K  + 
Sbjct: 369 DVEWHKLAELKAAS----NDPLLPPMETLQILGGRKDKIR 404



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 20/66 (30%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  +  G K K     ++  L   +G     IG I V    T+V V         R
Sbjct: 388 PPMETLQILGGRKDKIRPGDVLGALTGDAGFAGSQIGKINVTDMSTYVAVERSIAREAVR 447

Query: 524 TVKLDK 529
            +   K
Sbjct: 448 RLSAGK 453


>gi|257482474|ref|ZP_05636515.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330984618|gb|EGH82721.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009703|gb|EGH89759.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 459

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVDLL 521
            +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++ L
Sbjct: 385 MTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALERL 444

Query: 522 RRTVKLDKGIQLKYL 536
                  K ++++ L
Sbjct: 445 NNGKIKGKSLRVRIL 459


>gi|254573064|ref|XP_002493641.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|238033440|emb|CAY71462.1| Putative nucleolar DEAD box RNA helicase [Pichia pastoris GS115]
 gi|328354532|emb|CCA40929.1| RNA Helicase [Pichia pastoris CBS 7435]
          Length = 766

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 181/373 (48%), Gaps = 10/373 (2%)

Query: 1   MKIFENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
              F  +P   Q +   L    ++ +T +Q+  + P L+ +D+L +A+TGSGKT+AF + 
Sbjct: 41  FTKFSELPLSRQTLI-GLRGAHFIEMTGIQKEAIPPALQGQDILGAAKTGSGKTLAFLIP 99

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   LL E+  ++      AL I+PTRELA+Q+   L  +   +     + IGG     E
Sbjct: 100 LIEMLLRED--WNEFDGVGALIISPTRELAMQIYEVLLNIGKHSSFSCGLVIGGKDFKYE 157

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +     ++      L    +   LNI++L+ ++LDEAD +LD+GF+  ++ I+ S P
Sbjct: 158 SERIGKINVLIGTPGRLLQHMDQSANLNINNLQMLILDEADRILDMGFKKTLDSIISSIP 217

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAI 235
            +R+ L+FSAT + ++  LA+    +   +N +S+        ++   ++V L+++ N +
Sbjct: 218 PQRQTLLFSATQTKSVQDLARLSLTNPKYINSSSDLDLATPDSLEQSYIVVPLNEKINTL 277

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDG 293
            + ++ H     +VF S+   V    +   +    +  +     Q++ +           
Sbjct: 278 WSFIKTHLKSKILVFLSSSKQVHFLYEAFRKLQPGISLMKLHGRQKQTARIETTVKFSHA 337

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +     ATDV ARG+D P ++ V+  +   +    +HR GR  RAG++G S+ ++  + +
Sbjct: 338 QHCCLFATDVVARGLDFPAIDWVVQLDCPEDASTYIHRVGRCARAGKEGKSLLILTPSEE 397

Query: 354 RRAERLFREANVS 366
               R     N+ 
Sbjct: 398 EAFVRRLEAKNIK 410


>gi|255656080|ref|ZP_05401489.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296450489|ref|ZP_06892245.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           difficile NAP08]
 gi|296879387|ref|ZP_06903381.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           difficile NAP07]
 gi|296260750|gb|EFH07589.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           difficile NAP08]
 gi|296429533|gb|EFH15386.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
           difficile NAP07]
          Length = 381

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     + + L ++   + T VQ  ++   ++ KD+L+++QTG+GKT+A+ L +
Sbjct: 1   MNTFEQLKISSTLIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE---WLYAKTGVVVAVCIGGVSVH 115
              +       +      AL +APT EL +Q+  ++E        +   +A+        
Sbjct: 61  FEKID------TSKRETQALILAPTHELVMQITNQVELLAKNAEISVTSLALIGEVNIQK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +       HIV+G+ GR+ D I+ K L   ++K +VLDE D +L+      IE I+ +
Sbjct: 115 QIKNIKSVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+++  SA+++ +   +     K+   +    +++ + +I++  +L  + D+   +
Sbjct: 175 TLRDRQIIGCSASLTDSTIKICDKLMKEFEIIKTKEKSQINPNINHSYLLGEIRDKFTFL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L     K AIVF +   ++      L  H ++ + + G +++++R NA+   + G+A
Sbjct: 235 RKTLTATNPKRAIVFVNNEKNIEVLVSKLNYHNYKAIGIFGNMAKEDRKNAINKFKLGKA 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ I TD++ARG+D+ D+  V + +   +    LHR GRT R  R G ++ +I +     
Sbjct: 295 KILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTARGNRNGNTISIITKKELDI 354

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + L +E N+ +  +   + E +
Sbjct: 355 IKDLQKEFNIVITPKTLQNGELV 377


>gi|229916313|ref|YP_002884959.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
 gi|229467742|gb|ACQ69514.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
          Length = 447

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/366 (28%), Positives = 180/366 (49%), Gaps = 10/366 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+       + +AL+E+     T +Q  I+   L  +D++  +QTG+GKT+AF L +
Sbjct: 1   MNSFQQFKLLPFMVDALTEKRITKPTDIQARIIPAALNGRDIIGKSQTGTGKTLAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHR 116
              +  E+       +  A+ +APTRELA Q+  EL+ +       +  ++ +GG    R
Sbjct: 61  VEAINPEDA------SVQAIVVAPTRELAWQIHEELKSILIKNPDYIKSSLIVGGTDRER 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++N   +++GTPGR+ D ++ + L    +   V+DEAD+MLD+GF  +++ I  + 
Sbjct: 115 QIDKMKNPPQLIIGTPGRILDLMKAQALFPHKVTHFVVDEADQMLDMGFLPEVDRIAQAL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+K + ++FSATI   +    K Y  D      + E+R    I +  + V   DR    V
Sbjct: 175 PEKLQTMVFSATIPENLEPFLKKYLHDPRFAEASPEHRVAPKIKHHVIPVRHRDRKELTV 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            I +       +VF +T+           E    V  L G++  + R  A++ + D + +
Sbjct: 235 EIAKAINPFVCLVFTNTKQEADELETSFREAGLNVGTLHGDMQARRRKQAIKDINDAKYQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             IATD+AARGID+  +  VI+  +  + +   HR GRTGRAG  G +  +   +     
Sbjct: 295 YVIATDLAARGIDISGVSHVINHGIPKDLDFYTHRVGRTGRAGASGEAYTLYEDHENGPI 354

Query: 357 ERLFRE 362
            RL   
Sbjct: 355 NRLEER 360


>gi|157155812|ref|YP_001463900.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|191167986|ref|ZP_03029788.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300817647|ref|ZP_07097862.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300927047|ref|ZP_07142799.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|301330322|ref|ZP_07222969.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|307313853|ref|ZP_07593469.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|309794370|ref|ZP_07688793.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|157077842|gb|ABV17550.1| ATP-dependent RNA helicase SrmB [Escherichia coli E24377A]
 gi|190901993|gb|EDV61740.1| ATP-dependent RNA helicase SrmB [Escherichia coli B7A]
 gi|300416931|gb|EFK00242.1| DEAD/DEAH box helicase [Escherichia coli MS 182-1]
 gi|300529635|gb|EFK50697.1| DEAD/DEAH box helicase [Escherichia coli MS 107-1]
 gi|300843656|gb|EFK71416.1| DEAD/DEAH box helicase [Escherichia coli MS 78-1]
 gi|306906354|gb|EFN36869.1| DEAD/DEAH box helicase domain protein [Escherichia coli W]
 gi|308121826|gb|EFO59088.1| DEAD/DEAH box helicase [Escherichia coli MS 145-7]
 gi|315061895|gb|ADT76222.1| ATP-dependent RNA helicase [Escherichia coli W]
 gi|323377524|gb|ADX49792.1| DEAD/DEAH box helicase domain protein [Escherichia coli KO11]
          Length = 444

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|302559847|ref|ZP_07312189.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302477465|gb|EFL40558.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 538

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 130/452 (28%), Positives = 213/452 (47%), Gaps = 18/452 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   
Sbjct: 99  TTFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 158

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +  
Sbjct: 159 ATL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVVGLRMKVVCGGTSMGNQIY 215

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P  
Sbjct: 216 ALERGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFMPEVTELLDQVPPG 275

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   I TL   Y KD V   + +     + + +  ++V    +D A V   
Sbjct: 276 GQRMLFSATMENEIKTLVDRYLKDPVSHEVDAAQGAVTTMSHHILVV--KPKDKAPVTAA 333

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +
Sbjct: 334 IASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLV 393

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL
Sbjct: 394 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRL 453

Query: 360 FREANVS----VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
             +A V     ++   A     + E    R + +          E        A+ +  +
Sbjct: 454 MEDAGVDATRHIIQGGAAFDPEVAEITGARSMTEV-------QAESAGNAAQQAEREVAQ 506

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           +A    R  R      +E   +     R+R  
Sbjct: 507 LAKELERAQRRASDLRDEDDRLVARVARERGE 538


>gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
 gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
           OB3b]
          Length = 447

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/379 (35%), Positives = 194/379 (51%), Gaps = 3/379 (0%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++   +VI  AL++ GYV  T +Q   +   L  +D+L  AQTG+GKT AF L +
Sbjct: 1   MTKFADLGLAEVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              LL E  R +P +A  AL +APTRELA Q+            + V V +GGV    + 
Sbjct: 61  LHRLLDERRRPAPQTA-RALVLAPTRELAAQIADSFRSYGRFARMSVGVIVGGVGHGPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L +G  ++V TPGRL DHI    L +   + +VLDEAD MLDLGF   I  I+   PK
Sbjct: 120 KMLASGVDVLVATPGRLLDHIASGALRLDTTRTIVLDEADHMLDLGFLAPIRKIVSRLPK 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L FSAT+   I  LA +   + V V +         +D R +LV  + + + +V +
Sbjct: 180 QRQSLFFSATMPKEIAALAADMLNNPVSVQVTPTATTAERVDQRVLLVDGAAKRDVLVEL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                   AIVF  T+    R ++ L  H     A+ G  SQ +R  AL   R GR R  
Sbjct: 240 FADPALACAIVFTRTKRGADRVSQHLEAHGVGSAAIHGNKSQSQRMRALDDFRRGRTRAL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  V++ EL   PE  +HR GRT RAG  G ++ +   + +     
Sbjct: 300 VATDIAARGIDVDGVTHVVNFELPETPEAYVHRIGRTARAGAGGAAISLCDNSERPLLRA 359

Query: 359 LFREANVSVVWEPAPSVEA 377
           + +    S+      S +A
Sbjct: 360 IEKSTRQSLPVVDRRSAQA 378


>gi|146197863|dbj|BAF57642.1| nucleolar RNA helicase II/Gu protein [Dugesia japonica]
          Length = 627

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/433 (26%), Positives = 191/433 (44%), Gaps = 17/433 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L  RG   L  +Q    +     KDV+  A+TG+GKT AF L + + L    
Sbjct: 51  LSSDLQKKLQARGVKALFPIQIKTFHHIHTGKDVIAQAKTGTGKTFAFALPVLTKLENSG 110

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            D       P  + +APTREL  Q+  + E L +K   V+++  G     +    L+NG 
Sbjct: 111 IDGLKSGRKPKVIVMAPTRELVSQIASDFESLISKNLKVLSIYGGVSYEKQTT-ALKNGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+ G PGR+ D I    L++S ++ V+LDE D MLD+GF D +E IL            
Sbjct: 170 DIIAGAPGRVRDLINKGHLDLSKIEYVILDEVDRMLDMGFSDIVEEILSYIYPSETDKKG 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---------YRAVLVALSDR---DN 233
             T+  + T     +      +   +      D +         + A+     +R     
Sbjct: 230 PQTLLFSATMPNWIHNIVKKYLKPDAIKVCLIDENGSKAASTVEHLAIQCPWRERAGTIP 289

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+ +         I+FC  +          A      V   G++ Q++R   L+  R+G
Sbjct: 290 DIIRVHGGGNQARCIIFCERKKDADELASHSAMKSDCHVLH-GDVPQEKRELVLKKFREG 348

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  V + T+VAARG+D+PD++LVI      + E+ +HRSGRTGRAGRKG+ +       +
Sbjct: 349 KYSVLVTTNVAARGLDVPDIDLVIQCHPPKDVEDYIHRSGRTGRAGRKGVCICFYEPKEK 408

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFLDSIQGDEKKMVDVLLAKHD 412
              +++ + A  +      PS  +I E +    ++      +++    K+    L+ +  
Sbjct: 409 YDLQKVEKLAGFTFKRIFPPSAASIIEANLNDTIEAFKSIPETVCESFKESAIKLIEQFG 468

Query: 413 PEK-IAAGFLRIH 424
            EK +A    +I 
Sbjct: 469 AEKAMALALAKIS 481


>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 977

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/521 (23%), Positives = 224/521 (42%), Gaps = 47/521 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +   L    
Sbjct: 37  LSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQIL---- 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   
Sbjct: 93  KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FS
Sbjct: 153 VLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFS 212

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA------------------- 227
           AT+   +T  ++   +      I  +             +                    
Sbjct: 213 ATLPSQLTQFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKLQS 272

Query: 228 LSDR-----------DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +S++           +       +   +   IVF +TR +V  F  +L +       + G
Sbjct: 273 MSNKSTGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQVGITNAPIYG 332

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
            + Q +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT 
Sbjct: 333 SMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTA 392

Query: 337 RAGRKGMSVFVIPQNMQRRAERLF----REANVSVV--WEPAPSVEAIRERDAQRILQDP 390
           RAG KG+   ++  +    A  L     R+  +  +    P P+         ++ L   
Sbjct: 393 RAGAKGLCASLVTHDDMPYAVELMLFLGRKLGLQALGSDHPIPAEGEGEGEVDEKRLCVI 452

Query: 391 LFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
             + S+Q + + +    L   D E   A   R   +      +  P +      R +   
Sbjct: 453 GGIPSVQEEVETVRR--LVSGDAE--LASLQRSMMSAYHLYYKTRPAASNQSVRRAKLIL 508

Query: 451 RAFKVGGGSRDNFKGSSWFSLS--VGSKQKAEARWLMPMLC 489
           RA   G     +    + F  +  +GS+   + +  + M+ 
Sbjct: 509 RAEAGGPQRLLDTPHPA-FRTAADLGSQSVEDMKEKLDMIA 548


>gi|145569766|gb|ABP78872.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 526

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL   
Sbjct: 145 LAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLLETP 204

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+  +   L   TG  V++   G     + ++     
Sbjct: 205 PPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQLESRY 264

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 265 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 324

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 325 LLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLITQN 384

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 385 DWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATD 444

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +   
Sbjct: 445 VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEAL 504

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 505 IGRKIQCEMPPA 516


>gi|119505818|ref|ZP_01627884.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
 gi|119458316|gb|EAW39425.1| ATP-dependent RNA helicase [marine gamma proteobacterium HTCC2080]
          Length = 409

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   ++E G+   + +Q  IL   L+  D +  AQTG+GKT AF + + + LL  
Sbjct: 33  DLQDSLLRGVAELGFQYCSPIQAKILPHTLQGHDAIGKAQTGTGKTAAFLITIFNDLLCN 92

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQN 123
                   A P A+ IAPTREL +Q+  + E L   TG   V +  G     +  +    
Sbjct: 93  PPEGERYLAEPRAVIIAPTRELVMQIAADAEDLGKFTGLQTVTMIGGADYQKQLAKVQSR 152

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +VV TPGRL D ++ + L +  ++ +VLDEAD MLD+GF   ++ I+ ++P+K    
Sbjct: 153 VVDLVVATPGRLIDFMQRRDLFLDRVETLVLDEADRMLDMGFIPQVKRIVRATPRKEDRQ 212

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT +  I  LA+ +  D V V I  E    + +D R  LV   +R   ++ +LR 
Sbjct: 213 TLLFSATFTQDILNLAQQWTFDPVTVEIEPERVATATVDQRVYLVTSHERLKVLLKVLRG 272

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A + IVF + R  V    + L +       LSGE++Q  R+  L   + G+  V +AT
Sbjct: 273 PDAVSTIVFANRRDQVRSLHEKLRKAGISCGILSGEITQARRTKTLADFKSGKIAVLVAT 332

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G+S+    ++       +  
Sbjct: 333 DVAGRGIHVDGVSHVVNYNLPEDPEDYVHRIGRTGRAGATGISISFASEDDAFLLPDIET 392

Query: 362 EANVSVVWEPAPS 374
                +     P+
Sbjct: 393 LLGERLKCVSPPA 405


>gi|301779033|ref|XP_002924934.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Ailuropoda melanoleuca]
          Length = 598

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 221 PILMHLKQPTNK-----GFRALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAK 275

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 276 KFGPKSSQKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 335

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 336 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAAETVEQELLFVGSE 395

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 396 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVH 455

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 456 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 515

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 516 TEDDKPLLRSVANVIQQAGCPVPE 539


>gi|229493632|ref|ZP_04387417.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
 gi|229319593|gb|EEN85429.1| ATP-dependent RNA helicase [Rhodococcus erythropolis SK121]
          Length = 559

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 3/353 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+       + +Q   +   L   +VL  AQTGSGKT+AFGL + + L    
Sbjct: 40  LPEQLVAALARNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSRHE 99

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 100 DRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLRRGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+FS
Sbjct: 159 VLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + +L + +  + V  +          +++  +LV    +D+  V          
Sbjct: 219 ATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEHYVLLVDRGQKDS--VLAEIGARDGR 276

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T  L        +L G  +Q +R+  L+  ++GR  V +ATDVAAR
Sbjct: 277 TIMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLVATDVAAR 336

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           GI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R+ +RL
Sbjct: 337 GIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRQFKRL 389


>gi|226306589|ref|YP_002766549.1| ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
 gi|226185706|dbj|BAH33810.1| putative ATP-dependent RNA helicase [Rhodococcus erythropolis PR4]
          Length = 686

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 3/353 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+       + +Q   +   L   +VL  AQTGSGKT+AFGL + + L    
Sbjct: 71  LPEQLVAALARNSITVPSPIQAQSIPDALAGTNVLGRAQTGSGKTLAFGLPMLTRLSRHE 130

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR + A  P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 131 DRPA-AKRPRALVLVPTRELAFQVVDSLNSYAGALGLTVRPAVGGTPFAKQVDQLRRGVD 189

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  IL  +P   + L+FS
Sbjct: 190 VLVATPGRLGDHLRQGTCILDSVEITALDEADQMADMGFLPEVRSILGETPADGQRLLFS 249

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + +L + +  + V  +          +++  +LV    +D+  V          
Sbjct: 250 ATLDREVQSLVRQFLANHVTHSTEDGRASVDTMEHYVLLVDRGQKDS--VLAEIGARDGR 307

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T  L        +L G  +Q +R+  L+  ++GR  V +ATDVAAR
Sbjct: 308 TIMFARTKLGCEGITDRLRAVGIAAESLHGGKAQNQRTRVLERFKNGRTPVLVATDVAAR 367

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           GI +  ++LV+H +  ++ ++ LHR+GRT RAG KG  V ++  N +R+ +RL
Sbjct: 368 GIHVDGIDLVVHVDPPADHKDYLHRAGRTARAGEKGTVVAIVLPNQKRQFKRL 420


>gi|73952801|ref|XP_850174.1| PREDICTED: similar to nucleolar protein GU2 isoform 2 [Canis
           familiaris]
          Length = 738

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 140 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 199

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 200 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 257

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 258 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 317

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 318 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 377

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 436

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 437 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 496

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 497 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 527


>gi|316968668|gb|EFV52921.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 755

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/420 (26%), Positives = 206/420 (49%), Gaps = 13/420 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   +A+ + G+  +T +Q   +   L  +DV+ +A+TGSGKT+AF +     L    
Sbjct: 299 VSEQTLKAIRDMGFETMTEIQAQTIPSLLEGRDVMGAAKTGSGKTLAFLVPAVELLY--K 356

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L  L     +   + IGG +   E   L  G  
Sbjct: 357 LRFLPRNGTGCIVISPTRELSMQTYGVLIELLKYHSITHGLVIGGANRKIEAAKLSTGIC 416

Query: 127 IVVGTPGRLCDH-----IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           I+V TPGRL DH     +        +L+ +++DEAD +L++GF  +++ I+   PK+R+
Sbjct: 417 ILVATPGRLLDHLRVSGLNTTEFTYKNLQCLIIDEADRILEIGFELEMQQIIRLLPKQRQ 476

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNI 238
            ++FSAT +  I  LAK   K        + N + + +        +  + +R + +   
Sbjct: 477 TMLFSATQTAKIEDLAKLALKKEPLFVGIASNVEQATVEGLRQGYAVCPIENRFSLLYTF 536

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR +  K  +VF S+ ASV   + +L      V ++ G+  QQ+R++        +A   
Sbjct: 537 LRKNKKKKVMVFFSSCASVKYHSDLLNYIEVPVASIHGKQKQQKRTSTFFSFIKAQAGTL 596

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRRAE 357
           + TDVAARG+D+P ++ ++  +   +P + +HR GRT R  G +G ++ ++  +  +   
Sbjct: 597 LCTDVAARGLDIPKVDWIVQYDPPDDPTDYIHRVGRTARGEGGQGNALLILQPSELKFL- 655

Query: 358 RLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              ++A + V  +E +    A  ++  +++L+  ++L     +  K        H  + I
Sbjct: 656 YYLKQAKIPVLEYECSWDKVANVQKQLEKLLKSNVYLFKSAIEAFKGYVRAYDSHQLKDI 715


>gi|306832864|ref|ZP_07465998.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
 gi|304425003|gb|EFM28135.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           bovis ATCC 700338]
          Length = 447

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/467 (23%), Positives = 201/467 (43%), Gaps = 29/467 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I EAL+E  + N T VQ+ ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 7   NFKPYIREALAELKFTNPTEVQQKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDEN 66

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
           ++          +  AP+RELA Q+ +  + +  K+   + V         + +  +   
Sbjct: 67  SNNV------QVVITAPSRELATQIYQATKQIAEKSETEIRVVNYVGGTDKLRQIEKLKS 120

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  + PK  ++
Sbjct: 121 SQPHIVIGTPGRIYDLVKSGDLEIYKAHTFVVDEADMTLDMGFLDTVDKIAGTLPKDVQI 180

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I +       ID   V     D++  I+ I +  
Sbjct: 181 LVFSATIPQKLQPFLKKYLTNPVMEKIKTTTVIADTIDNWLVSTKGRDKNAQILEITKAL 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G++  +ER   +  ++       +ATD
Sbjct: 241 NPYLAMIFVNTKERADELHSYLVSNGLKVAKIHGDIPPRERKRTMNQIKKLSYEYIVATD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR    G+++ +   +       L + 
Sbjct: 301 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNDLNGIAITLYKPSDDSDIRELEK- 359

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + + + P             ++L++  F D+   D +   +    K D E I     +
Sbjct: 360 --MGIKFVP-------------KMLKNGEFQDTYDRDRRANREKSYQKLDTEMIGLVKKK 404

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF 469
             +      ++I         ++ + + RA     G  +       F
Sbjct: 405 KKKIKPGYKKKIQWKV----DEKRKRERRAANRAKGRAERKARKQTF 447


>gi|68061551|ref|XP_672775.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56490118|emb|CAI02126.1| RNA helicase , putative [Plasmodium berghei]
          Length = 434

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/428 (23%), Positives = 192/428 (44%), Gaps = 54/428 (12%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++   + I   L+E+ +   T++Q+      L  KD++  A+TGSG T+AF L  
Sbjct: 12  ITQFSDLDFHESILNYLNEK-FKEPTAIQKITWPIALSGKDLIGVAETGSG-TLAFVLPC 69

Query: 59  ASTLLAENDRFSPASAP--------------------------------------LALAI 80
              +L    +    +                                          L +
Sbjct: 70  LMHILKHKQKEMEENGVEHIKNNEEKLSENNNNDNNYDPDFEKEFQNDDSENRKTYGLIL 129

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTREL +QV  E++   ++  +      GGV  + +  +++ GA I+V TPGRL D++ 
Sbjct: 130 LPTRELCMQVLNEIKNFESELNLKAVAVYGGVPKYFQINNIKKGADIIVATPGRLLDYLE 189

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT---TLA 197
              +N+     VV+DEAD +LD+GF   +  I+    K +++L  +AT    +       
Sbjct: 190 NGIINLLRCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLAYDF 249

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
            ++    +++  +      +      V  ++  +   +  +   +     ++FC T+ + 
Sbjct: 250 CSFDPVKIQIGKSELTANKNIEQQVIVSSSIDLKKKLLDWLKDNYENNKILIFCDTKRNC 309

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
               K L  H +  +++ G+  Q+ER   L   ++ R  + +ATDVA+RG+D+ ++ +VI
Sbjct: 310 DNLCKELRYHQYNSLSIHGDKQQRERDRILNNYKNDRCNILVATDVASRGLDIKNISIVI 369

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-----MQRRAERLFREANVSVVWEPA 372
           + ++ +  E+ +HR GRTGRAG KG S+   P +      QR A+ L +  N +    P 
Sbjct: 370 NYDIPNTIEDYIHRIGRTGRAGNKGQSILFFPYDYYVPQKQRFAKDLIKLLNKTNQQVP- 428

Query: 373 PSVEAIRE 380
              + +RE
Sbjct: 429 ---KELRE 433


>gi|16130501|ref|NP_417071.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109382|ref|AP_003162.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082185|ref|YP_001731505.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901741|ref|YP_002927537.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|134878|sp|P21507|SRMB_ECOLI RecName: Full=ATP-dependent RNA helicase srmB
 gi|42996|emb|CAA32364.1| SrmB protein [Escherichia coli]
 gi|285777|dbj|BAA02447.1| putative ATP dependent RNA helicase [Escherichia coli]
 gi|987650|dbj|BAA10922.1| putative ATP dependent RNA helicase [Escherichia coli K-12]
 gi|1788930|gb|AAC75629.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85675467|dbj|BAE76752.1| ATP-dependent RNA helicase [Escherichia coli str. K12 substr.
           W3110]
 gi|169890020|gb|ACB03727.1| ATP-dependent RNA helicase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238860047|gb|ACR62045.1| ATP-dependent RNA helicase [Escherichia coli BW2952]
 gi|260448344|gb|ACX38766.1| DEAD/DEAH box helicase domain protein [Escherichia coli DH1]
 gi|315137200|dbj|BAJ44359.1| ATP-dependent RNA helicase SrmB [Escherichia coli DH1]
          Length = 444

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|326430393|gb|EGD75963.1| vasa [Salpingoeca sp. ATCC 50818]
          Length = 873

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/392 (28%), Positives = 195/392 (49%), Gaps = 19/392 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
              V+ + +  +G+   T +Q   +   +  +DV+  A+TGSGKT AF   +   +L + 
Sbjct: 301 FDDVMMQLIQRQGFAQPTPIQAQAVPTVMSGRDVIGIAETGSGKTAAFVWPMIKHILDQP 360

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           D       P+A+ +APTREL +Q+ +          + VA   GG S + + + L++G  
Sbjct: 361 D-LKRGDGPIAVLLAPTRELCMQISQNTRRYAKHYNIRVATVYGGGSRYEQVKTLKDGCE 419

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I+ K  N+  +  +VLDEAD M D+GF   +  I++ +   R+ L+F+
Sbjct: 420 VVVATPGRLIDLIKDKATNLRRVTYLVLDEADRMFDMGFSLQVNSIINHTRPDRQTLLFT 479

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL--RYHGA 244
           AT    +  LA+   ++ VR+ + +  + ++DI+ R  ++  +      +         A
Sbjct: 480 ATFKKKVEKLARQALRNPVRIVVGTVGKANTDIEQRVEIMQDTASKWGWLKAHLVEMQSA 539

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
            N +VF + +A      + +    FQ V + G++ Q  R   L   +    R+ +ATDVA
Sbjct: 540 GNVLVFVNKKADAETLHESMVAAGFQAVVIHGDIDQITRQEVLSKFKKQTVRILVATDVA 599

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P +  V++ + + + +   HR GRTGRAG KG +  ++       A +L     
Sbjct: 600 ARGLDIPSVRNVVNFDAAMSIDTHTHRIGRTGRAGVKGTAWTLLLPTETSFAAQLVE--- 656

Query: 365 VSVVWEPAPSVEAIRERDAQRIL----QDPLF 392
                    S+EA  +R +  +L    QDP F
Sbjct: 657 ---------SLEAASQRVSDALLHMAEQDPRF 679


>gi|24378946|ref|NP_720901.1| putative ATP-dependent RNA helicase [Streptococcus mutans UA159]
 gi|24376832|gb|AAN58207.1|AE014891_11 putative ATP-dependent RNA helicase [Streptococcus mutans UA159]
          Length = 447

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/464 (23%), Positives = 195/464 (42%), Gaps = 28/464 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+N    I  AL+   +   T VQE ++   L  KD++  ++TGSGKT  F L +   L 
Sbjct: 8   FKN---YINNALANLHFEGPTEVQERLIPLILSGKDLVGESKTGSGKTHTFLLPIFEKLE 64

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRD 120
            ++          A+  AP+RELA Q+    + +   +   + +         + +  + 
Sbjct: 65  EDSLDV------QAVITAPSRELARQIYEAAKQIAQFSEQNIRLANYIGGTDKLRQVEKL 118

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 I++GTPGR+ D ++   L+I      V+DEAD  LDLGF D ++ I  S PK  
Sbjct: 119 KATQPQIMIGTPGRIYDLVKSGHLDIHKAHTFVVDEADMTLDLGFLDTVDKIAASLPKDI 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSATI   +    K Y    +   I +       I    +     D++  I+ I++
Sbjct: 179 QLLVFSATIPQKLQPFLKKYLNHPIIEKIKTSTVIADTISNWLISTKGRDKNQQILEIVK 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+F +T+  V      L+ + F+   + G +  +ER   +  ++       +A
Sbjct: 239 SLKPYLAIIFANTKDRVDDLHAFLSANGFKTAKIHGGIPPRERKRIMNQVKQLDFEYIVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L 
Sbjct: 299 TDLAARGLDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELE 358

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +   + +V+ P             ++L++  F D+   D +        K D E +    
Sbjct: 359 K---LGIVFVP-------------KVLKNGEFQDTYDRDRRLNRKKTQEKLDLEMMGLVK 402

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            +  +      ++I        R   R   RA           +
Sbjct: 403 KKKKKIKPGYKKKIQWKVNEKRRKERRFVKRAQNRANRKAKKQR 446


>gi|213405451|ref|XP_002173497.1| ATP-dependent RNA helicase dbp4 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001544|gb|EEB07204.1| ATP-dependent RNA helicase dbp4 [Schizosaccharomyces japonicus
           yFS275]
          Length = 767

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/361 (26%), Positives = 173/361 (47%), Gaps = 7/361 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P  Q    AL    +V  T +Q+  +   L+ +D+L +A+TGSGKT+AF + +   
Sbjct: 41  FEDLPLSQPTKSALKNAHFVKCTDIQKKAIYVALKGRDILGAAKTGSGKTLAFLIPVIEN 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++P     AL I+PTRELA+Q    L  +         + IGG    +ER  L
Sbjct: 101 LY--RRKWTPYDGLGALIISPTRELAMQTFETLVKIGRLHSFSAGLIIGGNDYKQERDRL 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +    + S L+ +VLDEAD +LD+GFR  ++ I+ S PKKR+
Sbjct: 159 SRMNILVCTPGRLLQHMDQAINFDTSSLQMLVLDEADRILDMGFRKTLDAIITSLPKKRQ 218

Query: 182 MLMFSATISPAITTLAKN-YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            ++FSAT +        + +  D + V+  +++    +++   ++  L ++ + +   ++
Sbjct: 219 TMLFSATQTSVSDLARLSLHDPDYISVHEHADHVTPDNLNQFYLVAPLPEKLDILFGFIK 278

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGRARVC 298
            H     IVF S+   V    +        V  +     Q++ S           +  V 
Sbjct: 279 THLKLKIIVFFSSCKQVRFAFECFKRLRPGVPLMHLHGKQKQASRTEIAAKFTSTKNAVL 338

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+ ARG+D P ++ V+  +   + +  +HR GRT R  R G ++ ++  + +   +R
Sbjct: 339 LCTDIVARGLDFPAVDWVVQVDAPEDVQTYIHRVGRTARFERGGNALLMLLPSEEAFLKR 398

Query: 359 L 359
           L
Sbjct: 399 L 399


>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
          Length = 629

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/375 (31%), Positives = 187/375 (49%), Gaps = 15/375 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++P  + +  +   +   + +Q+   +  LR +DV+  A TGSGKT+AFGL     +  
Sbjct: 217 SSMPDDVMKVCAT--FEKPSPIQKHTWSIVLRGRDVVGIAATGSGKTLAFGLPGLVHV-- 272

Query: 65  ENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDL 121
              R +P    P  L I+PTRELA+Q G+ L        T + V    GG     +   +
Sbjct: 273 -AARGTPGRGRPFMLVISPTRELAMQTGKVLSDAGKGMNTPLNVQCIFGGAQRREQMDAM 331

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   H++V TPGRL D      +++S +   VLDEAD MLD+GF  DI+ I+   P  R+
Sbjct: 332 RKPVHVIVATPGRLLDLCEAGSIDLSAVTFNVLDEADRMLDMGFERDIKRIMAQMPTPRQ 391

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV---N 237
            +MFSAT    +  +AK+Y    V+V + S++     ++     ++    ++  ++    
Sbjct: 392 TVMFSATWPQEVRRIAKDYLNRPVKVTVGSDDLAASKNVTQIVEVIDPKQKNGRLLDLLR 451

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     +VF   +   +R  + L    +   A+ G+LSQ +R+  LQ  + G   +
Sbjct: 452 KYHKSRKNKVLVFALYKKEAARLEQFLQYKGYNTKAIHGDLSQGDRNRVLQEFKSGEVPL 511

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+PD+E VI+       E  +HR GRTGRAG KG +  +  Q+ +  A 
Sbjct: 512 MIATDVAARGLDVPDVEYVINYTFPLTIEEYVHRIGRTGRAGAKGTAHTLFTQHDKHHAG 571

Query: 358 RL---FREANVSVVW 369
            L    R A V+V  
Sbjct: 572 GLGNVLRAAGVTVPE 586


>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
 gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
          Length = 463

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 119/406 (29%), Positives = 211/406 (51%), Gaps = 11/406 (2%)

Query: 1   MKI-FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M + FE++   Q + + L+E      + VQ   +   ++ K VL  +QTG+GKT+A+ L 
Sbjct: 1   MTLNFESLGVEQDLLDKLTEHEITQPSPVQAEAIPEIIKGKHVLARSQTGTGKTLAYLLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           L   +  +        A   L +AP++ELA+Q+ RE +      G+ V   IGG ++ R+
Sbjct: 61  LLQAIDPQK------KATQKLILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++   +VVGTPGR+ + I  K L + ++ A+V+DE D+M  LG   D+  IL ++ 
Sbjct: 115 IEKLKDHPQLVVGTPGRVRELIASKKLKMHNITAIVIDEVDQMFQLGGAGDVTNILGTAQ 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+++  SAT++  I +LAK   +D V + I  + +  S +++   +    D+ + +  
Sbjct: 175 RDRQLVFLSATLNDEIQSLAKREMRDYVEIGIDPDQKTASGLEHYYFVSEERDKVDMLRR 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R+   + A+VF +T  ++      L        +L G+  +  RSN L   R+ + +V
Sbjct: 235 LVRHFNPRKALVFVNTTNAIGEIEAKLKHMGLTTASLYGDADKVTRSNVLARFREDKLKV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+DVAARG+D+  LE+VIH + +++ +  +HR+GRTGR GRKG+   V+         
Sbjct: 295 LVASDVAARGLDIEGLEMVIHFDPATDSQAYVHRAGRTGRMGRKGLVASVVTDRETFIMR 354

Query: 358 RLFREANVSVVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEK 401
           +  RE  + +          +  R  DA+R    P    SI    +
Sbjct: 355 KFSRELGIDIAERALHGGRVVVPRPADAKRAPVRPSEARSISDGAQ 400


>gi|17507945|ref|NP_491962.1| hypothetical protein H27M09.1 [Caenorhabditis elegans]
 gi|7206748|gb|AAF39907.1| Hypothetical protein H27M09.1 [Caenorhabditis elegans]
          Length = 630

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 193/382 (50%), Gaps = 18/382 (4%)

Query: 1   MKIFENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK     P+ + E + + +G V  T++Q   +   L  +D++  A TGSGKT+ F L L 
Sbjct: 194 MK----FPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLV 249

Query: 60  STLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGG 111
              L +  +  F  +  P  L I P+RELA Q+   +  ++   G      +   +CIGG
Sbjct: 250 MFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMRAGLCIGG 309

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           V +  + +D+++G HIVV TPGRL D +  K +N+   + +VLDEAD MLD+GF D+I+ 
Sbjct: 310 VPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMGFEDEIKS 369

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I      +R+ L+FSAT+   I   AK+     + VN+        ++      V   ++
Sbjct: 370 IFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQELEFVRSENK 429

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+    K  ++F   +  V    + L     +V ++ G   Q +R   ++  R
Sbjct: 430 LVRVLECLQKTSPK-VLIFAEKKVDVDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFR 488

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V +ATDVA++G+D   +E VI+ ++  + EN +HR GRTGR+GRKG++   I + 
Sbjct: 489 KNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGRTGRSGRKGLATTFINKK 548

Query: 352 MQR----RAERLFREANVSVVW 369
            +       ++L  EA   +  
Sbjct: 549 SEMSVLSDLKQLLAEAGQELPE 570


>gi|94314203|ref|YP_587412.1| 23S rRNA ATP-dependent RNA helicase [Cupriavidus metallidurans
           CH34]
 gi|93358055|gb|ABF12143.1| ATP-dependent RNA helicase, specific for 23S rRNA [Cupriavidus
           metallidurans CH34]
          Length = 467

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 136/407 (33%), Positives = 202/407 (49%), Gaps = 14/407 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +P    +   L + GY  +T +Q A L   L   D++  A+TGSGKT AF L+L 
Sbjct: 7   TSFATLPLSAAMQATLVQLGYDAMTPIQAASLPLALAGHDLIAQARTGSGKTAAFALSLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRER 118
             L              AL + PTRELA QV +E+  L   +  V V    GG  +  + 
Sbjct: 67  HRLDPRPLDV------QALVLCPTRELADQVTQEIRRLARAEDNVKVLTLSGGTPIRPQV 120

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L +GAH+VVGTPGR+ DH+    LNI  +  +VLDEAD MLD+GF DDI FI   +PK
Sbjct: 121 ESLVHGAHVVVGTPGRIIDHLDRGSLNIDAINTLVLDEADRMLDMGFHDDIAFIASHAPK 180

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT   AI  LA +      +     E    + I  R   V   DR NA+  +
Sbjct: 181 DRQTLLFSATYPAAIDKLA-HRFLRQPKTVKVEEAHDAATITQRFYEVEEGDRLNAVGRL 239

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L +      + FC+T+A       +L    +  + L G+L Q++R   L    +    V 
Sbjct: 240 LDHFRPATTLAFCNTKARCRDLADLLRAQGYAALELHGDLDQRDRDQVLVQFANRSCSVL 299

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGRAG  G +  ++  +   R   
Sbjct: 300 VATDVAARGLDIAQLEAVINVDVTPDPEVHVHRVGRTGRAGEAGSAFSLVSLDEMGRVGN 359

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           + +       W    +++ ++     R+L  P+    + G  K+ + 
Sbjct: 360 IEQHQGGEFEWH---ALDELKPSGGGRLL-PPMVTLQMLGGRKEKIR 402



 Score = 56.5 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS--- 514
           G            +  G K+K     ++  L   +G  ++ IG I V    T++ V    
Sbjct: 380 GGGRLLPPMVTLQMLGGRKEKIRPGDILGALTGEAGFTKEQIGKISVMEMSTYIAVDRAI 439

Query: 515 -ADGVDLLRRTVKLDKGIQLKYL 536
             + V  L       + ++++ L
Sbjct: 440 GREAVKRLNEGKVKGRKVRVRML 462


>gi|315282345|ref|ZP_07870774.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
 gi|313614006|gb|EFR87721.1| probable ATP-dependent RNA helicase YqfR [Listeria marthii FSL
           S4-120]
          Length = 435

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKIDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLVERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|225559318|gb|EEH07601.1| DEAD-box protein [Ajellomyces capsulatus G186AR]
          Length = 615

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 177/435 (40%), Gaps = 56/435 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 131 VKNFDDAGLHPVMRENIKLCGYKVPTPIQAYAIPAVLTGNDLIAVAQTGSGKTAAFLIPV 190

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 191 LSKLMGKAKKLAAPRPDLGNGFNESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 250

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADEML
Sbjct: 251 LRPCVVYGGGPTREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKYTIVDEADEML 310

Query: 162 DLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID- 220
              +  ++  ++       +           +T      +    R  + S     S  + 
Sbjct: 311 HSDWETELSKLMSGGGTYTKQARIITECRNFLTMSIDTNEDADHRYMMFSATFNKSCREL 370

Query: 221 -------------------------YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRA 255
                                       V      +  A+ ++L        +VF +T+A
Sbjct: 371 ARKFLAADHVRIRIGRAGSAHLNVSQNIVYAEDHLKKQALYDLLISMPPSRTLVFVNTKA 430

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                   L        ++  + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  
Sbjct: 431 QADLIDDYLYNMGLPSTSIHSDRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMH 490

Query: 316 VIHAELSS----NPENLLHRSGRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSV 367
           VI+ ++ S      E  +HR GRT R G +G++          ++     ++  E    +
Sbjct: 491 VINFDMPSATHGGIEEYIHRIGRTARIGNEGLATSFYNHDRNSDIAADLVKILLECKQPL 550

Query: 368 V---WEPAPSVEAIR 379
                   P  + +R
Sbjct: 551 PDFLESEKPEGDDVR 565


>gi|170057770|ref|XP_001864629.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167877091|gb|EDS40474.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 798

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 182/393 (46%), Gaps = 34/393 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F++  + ++I   +    Y   T VQ+  +   +  +DV+  AQTGSGKT AF + +
Sbjct: 293 INTFDDIELTEIIENNIKLANYDVPTPVQKYAIPIVMSGRDVMACAQTGSGKTAAFLVPI 352

Query: 59  ASTLLAENDRFSPASAP--------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +        P + P        L L +APT+          +    ++ +   V  G
Sbjct: 353 LNQMYKHGVTPPPQNRPFNRRKQYPLGLVLAPTQS---------KKFCYRSRMRPCVLYG 403

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G +   + R+L  G H+VV TPGRL D I    + + +++ +VLDEAD MLD+GF   I 
Sbjct: 404 GNNTQEQMRELDRGCHLVVATPGRLEDMIMRGKVGLDNIRFLVLDEADRMLDMGFEPQIR 463

Query: 171 FILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            I++ S   +    + LMFSAT   AI  LA ++  + + + +        +I      V
Sbjct: 464 RIVEESKMPQTGERQTLMFSATFPKAIQELASDFLHNYIFLAVGRVGSTSVNITQSIFWV 523

Query: 227 ALSDRDNAIV--------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
             +D+ + ++                   ++F  T+ S       L  +   V ++ G+ 
Sbjct: 524 EENDKRSHLLDLLSNIKDQNDGDEKDCLTLIFVETKKSADALEDFLYNYNHPVTSIHGDR 583

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q+ER  AL+  R GR  V +AT VAARG+D+P+++ VI+ +L +  E  +HR GRTGR 
Sbjct: 584 TQKEREEALKFFRSGRCPVLVATAVAARGLDIPNVKHVINFDLPAEVEEYVHRIGRTGRM 643

Query: 339 GRKGMSVFVIPQNMQRRAE---RLFREANVSVV 368
           G  G +        +  A    RL  E    + 
Sbjct: 644 GNLGTATSFFNDKNRNVATGLVRLLTETQQEIP 676


>gi|15803103|ref|NP_289134.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H7 EDL933]
 gi|12516997|gb|AAG57692.1|AE005488_3 ATP-dependent RNA helicase [Escherichia coli O157:H7 str. EDL933]
          Length = 444

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 181/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++ DEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLIXDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
          Length = 827

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/505 (24%), Positives = 216/505 (42%), Gaps = 43/505 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 315 NLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 374

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 375 PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRP 431

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 432 DVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 491

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + ++      +              R   ++ + + 
Sbjct: 492 FSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKE 551

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   +      +   L G +SQ++R  +++  R+G+A   +AT
Sbjct: 552 IYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGKAAFLLAT 611

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  +   +
Sbjct: 612 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 671

Query: 362 EAN------VSVVWEPA----------PSVEAIRERDAQRILQDPLFLDSIQGD------ 399
                     S V EPA             + + E  ++  L+  L    +Q        
Sbjct: 672 AGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLI 731

Query: 400 ----------EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
                     ++   +    K    K+ A  L    AG+   E+      +S +D+ R D
Sbjct: 732 KHEAEIKSRPKRTWFETERDKKAARKLGAAELNGPDAGMSKKEKQK----LSNKDKKRLD 787

Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVG 474
               +   G+      ++  S+  G
Sbjct: 788 DSRQRQEAGAGWKKGRATRESMKNG 812


>gi|224135589|ref|XP_002322111.1| predicted protein [Populus trichocarpa]
 gi|222869107|gb|EEF06238.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 198/386 (51%), Gaps = 22/386 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +   + +A+    Y   + +Q A +   L+++DV+  A+TGSGKT AF L + + +  L 
Sbjct: 297 LSSELLKAVERVVYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTCAFVLPMLTYISRLP 356

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                + A  P A+ +APTRELA Q+  E        G+ V   +GG S+  +   ++ G
Sbjct: 357 PMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFRIRQG 416

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------------- 169
             +V+ TPGRL D +  +   ++    VVLDEAD M+D+GF   +               
Sbjct: 417 CEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPE 476

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    ++  
Sbjct: 477 NEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMTK 536

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S++ + +  +L   G K AIVF +T+ +     K L +H ++V  L G  SQ++R  +L
Sbjct: 537 ESEKSSRLHRLLDELGDKTAIVFVNTKKNADMVAKNLDKHGYRVTTLHGGKSQEQREISL 596

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R  R  V +ATDVA RGID+PD+  VI+ ++  N E   HR GRTGRAG+ G++   
Sbjct: 597 EGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVASTF 656

Query: 348 IP---QNMQRRAERLFREANVSVVWE 370
           +     ++    +++  ++N SV  E
Sbjct: 657 LTLGDTDVFYDLKQMLIQSNSSVPPE 682


>gi|308808280|ref|XP_003081450.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
 gi|116059913|emb|CAL55972.1| putative RNA helicase [Oryza sativa (ISS) [Ostreococcus tauri]
          Length = 734

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 109/397 (27%), Positives = 196/397 (49%), Gaps = 18/397 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE+    + +        +   + +Q       +  +D++  A TGSGKT+AFG+  
Sbjct: 322 VSTFEDAGFSKELLRV--TANFQKPSPIQAQSWPIVMSGRDMVGIAATGSGKTLAFGMPA 379

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + + ++         P+ L +APTRELA Q  +  +     +GV      GG   + ++
Sbjct: 380 LTQIRSQPP--CKPGQPICLVLAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQK 437

Query: 119 RDLQNG--AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             ++ G  A ++V TPGRL D +    + +  +  +VLDEAD MLDLGF  +I  I  ++
Sbjct: 438 NAMKAGGGAAVIVATPGRLRDFMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGAT 497

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAI 235
              R+ +MFSAT   ++ +LA  +  + VRV I SE  +    I     +V   D+D  +
Sbjct: 498 RADRQTVMFSATWPMSVQSLASEFMCNPVRVRIGSEGLKASQSITQIVEVVEPQDKDRHL 557

Query: 236 VNILRYH-----GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
             +++ +          ++F   +   +   + L+      V + G++SQ +R  +++  
Sbjct: 558 ARVMKQYLGSPKDCPRTLIFGLYKKECANLHQRLSREWPA-VCIHGDMSQADRERSVEAF 616

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           + G +R+ IATDVAARG+D+  +E VI+       E+ +HR GRTGRAG  G++     Q
Sbjct: 617 KKGTSRILIATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTQ 676

Query: 351 NMQRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           + + RA  L    R+A   V  +       +++++++
Sbjct: 677 HDKARAGELVNVLRKAGAEVPEDLTKFGTHVKKKESK 713


>gi|239614103|gb|EEQ91090.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis ER-3]
          Length = 587

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 181/415 (43%), Gaps = 37/415 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQT--GSGKTVAFGL 56
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQT  GSGKT AF +
Sbjct: 130 VKSFDDAGLHPVMRENIKLCGYNVPTPIQAYAIPAVLAGNDLIAVAQTVKGSGKTAAFLI 189

Query: 57  ALASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAK 100
            + S L+ +  + +                    PL L +APTREL+ Q+  E   L  +
Sbjct: 190 PVLSKLMGKAKKLAARRPDLGNGFNESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYR 249

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADE 159
           + +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADE
Sbjct: 250 SMLRPCVVYGGGPSREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKFTIIDEADE 309

Query: 160 MLDLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           ML   +  ++  ++     +     R M+  +           K    D VR+ I     
Sbjct: 310 MLHSDWEIELNKLMSGGDTNEDADHRYMMFSATFNKGCRELARKYLAADHVRIRIGRAGS 369

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            H ++  +        +  AI ++L        +VF +++A        L        ++
Sbjct: 370 AHLNVSQKIYYTDDDKKKEAIYDLLLSMPPSRTLVFVNSKAQADLLDDYLYNMGLPSTSI 429

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLH 330
             + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +H
Sbjct: 430 HSDRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSAAHGGIEEYIH 489

Query: 331 RSGRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAI 378
           R GRT R G +G++          ++     ++  E    V        P  + +
Sbjct: 490 RIGRTARIGNEGLASSFYNHERNSDIAADLVKILLECKQPVPDFLESEKPEGDDV 544


>gi|325918819|ref|ZP_08180902.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
 gi|325534965|gb|EGD06878.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
           35937]
          Length = 429

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 192/365 (52%), Gaps = 4/365 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           ALS+ G+   T +Q+  + P L  +D++  AQTGSGKT+A+ L L    +   +      
Sbjct: 19  ALSKAGHRTPTPIQQQAIPPMLAGRDLIAMAQTGSGKTLAYALPLLQQRMLAPETAPRVL 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVGT 131
              A+ + PTRELAVQV   L  L A         V IGG S++ +   L+ GA IVV T
Sbjct: 79  G--AVVLVPTRELAVQVDETLRQLAAHLPRRLKTVVAIGGSSINPQLLALRGGADIVVAT 136

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L +  +  +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT  P
Sbjct: 137 PGRLLDLVDHNALRLGEVATLVLDEADRLLELGFGAELDRILALLPTQRQSVLFSATYPP 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI  LAK   +D +R+ I +   Q   I+ RA+ V    R   + ++L  HG  + +VF 
Sbjct: 197 AIAALAKRRLRDPLRITIDATPEQAPAIEQRALAVDAGQRTQLLRHLLTEHGWSHVLVFV 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ++R +  +  + L +       L GELSQ  R+  LQ  +    +V +ATD+A RGID+ 
Sbjct: 257 ASRHTADKVAEKLGKAGINAQPLHGELSQGRRARTLQSFKQHEVQVLVATDLAGRGIDID 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            L  VI+ +L  +  +  HR GRT RAG  G+++  I  +  ++   + +   + V    
Sbjct: 317 ALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFITADNAQQWRLIEKRQGLRVPTRV 376

Query: 372 APSVE 376
               E
Sbjct: 377 IDGFE 381


>gi|307324569|ref|ZP_07603776.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306889813|gb|EFN20792.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 463

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 194/368 (52%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +  P+ +   L+++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 45  VTSFAELDMPKELITELTQQGVTVPFPIQAATLPNALAGRDVLGRGRTGSGKTLAFGLAL 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PLAL + PTRELA QV   L     + G+  A  +GG+S++R+ 
Sbjct: 105 LAR--TAGQRAEPRR-PLALVLVPTRELAQQVTEALTPYARRLGLRAATVVGGMSINRQA 161

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG+ +V+ TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P 
Sbjct: 162 DALRNGSEVVIATPGRLYDLIERGDCRLDQVRTTVLDEADQMADMGFLPQVTRLLRQVPA 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   I+ L + +  D    ++       + +++  + +A +D+ +  V  
Sbjct: 222 DGQRLLFSATLDHDISKLTRQFLDDPAVHSVDPSAGAVTTMEHHVLHIADTDKRS--VVT 279

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G     
Sbjct: 280 RVAARDGRVLLFLDTKRAVDRLTRHLLTSGVRAAALHGGKSQPQRTRTLDQFKSGHVTAL 339

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  + ++  + +R   R
Sbjct: 340 VATNVAARGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGSVITLVTPDQRREMGR 399

Query: 359 LFREANVS 366
           L  +A ++
Sbjct: 400 LMADAGIT 407


>gi|300934004|ref|ZP_07149260.1| putative ATP-dependent RNA helicase [Corynebacterium resistens DSM
           45100]
          Length = 386

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 114/376 (30%), Positives = 176/376 (46%), Gaps = 6/376 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     I  AL++ G  +   +Q A +   ++ +D+L    TGSGKT  FGL + 
Sbjct: 6   KTFADLGLSLPIVRALNQEGVKHPFPIQAAAIPQAIQGRDILGRGPTGSGKTFTFGLPII 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            +L       S    P AL + PTRELA QV + LE +    G  V   +GGV + R   
Sbjct: 66  ESL---QRGASAPKKPRALILVPTRELAAQVRQRLEPIANAAGQRVLEVVGGVKISRNIT 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+V TPGR  D +  K L+ S ++ + LDEAD+M D+GF   +  +L     +
Sbjct: 123 ALARPVDILVATPGRAQDLLDQKQLDFSEVRILALDEADQMADMGFLPQVTRLLQRLNSE 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L   +  + V  +               + V           I 
Sbjct: 183 CQHLLFSATLDGDVQILVNRFMNEPVTHSTGEATASVDS-MQHLLAVFDERDARNAAIIE 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  ++F  T+ +V R  K L       V L G+  Q  R NAL     G   V +
Sbjct: 242 LGKLGRRTVMFMRTKYAVDRQVKKLVRAGVPAVGLHGKKGQSTRENALGAFSTGEVSVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGID+ D+ELV+H +  +  +  +HR+GRT RAG +G  V +   +++    ++
Sbjct: 302 ATDIAARGIDVKDVELVVHIDPPAEHKAYVHRAGRTARAGAEGTVVTLTYADIKDDTLKM 361

Query: 360 FREANVSVVWEPAPSV 375
             +A VS      P +
Sbjct: 362 MTKAGVSPEIVAGPQI 377


>gi|91787583|ref|YP_548535.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
 gi|91696808|gb|ABE43637.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
          Length = 624

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 125/419 (29%), Positives = 198/419 (47%), Gaps = 49/419 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE------------KDVLVSAQTGSGKTVAF 54
           + + + +A+++ G+   T+VQ A +   ++              D+LVS+QTGSGKT AF
Sbjct: 54  LAKELLQAVADMGFTQPTAVQLATIPKAMQGLDADGADPKAKFTDLLVSSQTGSGKTAAF 113

Query: 55  GLALASTLLAE------------------------------------NDRFSPASAPLAL 78
            L +  TLL +                                    N R   A+ P AL
Sbjct: 114 LLPVLHTLLMQQEEAERQERAEFERLSAEAIAKGEAPPKKPKRKDPTNARNFKAATPGAL 173

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV  +   L      +    + G   ++ +      A++VV TPGRL D 
Sbjct: 174 ILCPTRELAQQVCADAIDLVRHCRGLRIANVVGGIPYQLQIAKLQNANLVVATPGRLLDL 233

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
            R   + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA 
Sbjct: 234 QRSMQIKLDQVQFLVVDEADRMLDLGFADDLTEVNQLTIERKQTMMFSATFAPRIMQLAT 293

Query: 199 NYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
              +   RV I S + +H+ I         ++ +   + + LR      +IVF  T+   
Sbjct: 294 RVMRTPQRVEIDSPHEKHTSITQSLLWADNMTHKRKLLDHHLRDTTMNQSIVFACTQVEC 353

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F  VAL G L Q  R+  L   RDGR +V +ATDVAARG+D+P +  VI
Sbjct: 354 DGLANDLVQEGFSAVALHGALGQGLRNRRLMAFRDGRVQVLVATDVAARGLDVPTITHVI 413

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           +  L    E+ +HR GRTGRAGR+G ++ +     +R+ + +      ++       +E
Sbjct: 414 NYGLPMKAEDYVHRIGRTGRAGREGQAITIAEFRDRRKIQDIEHYMQQNLKPSVIAGLE 472


>gi|73760070|dbj|BAE20150.1| ATP-dependent RNA helicase-like protein [Ketogulonicigenium
           vulgare]
          Length = 367

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 194/335 (57%), Positives = 251/335 (74%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
             +NI   +  ALS+RGY  LT+VQ+A+L P+   +D+LVSAQTGSGKTVAFG+A+A  L
Sbjct: 25  THQNIAAPLAAALSQRGYETLTAVQQAVLAPEADGRDLLVSAQTGSGKTVAFGIAVAPDL 84

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +++     + P+AL IAPTRELA+QV +EL WLYA  G  +A C+GG+    ERR L 
Sbjct: 85  LGDDNILPLNTPPVALFIAPTRELALQVAQELTWLYANAGAQIATCVGGMDYRTERRALA 144

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IVVGTPGRL DHI   GL++S L+  VLDEADEMLDLGFRDD+++IL ++P+ RR 
Sbjct: 145 RLPQIVVGTPGRLRDHIDRGGLDLSELRVTVLDEADEMLDLGFRDDLQYILQAAPEDRRT 204

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           LMFSAT+   I  LA+++Q DA+R+    E +QH+DI Y+A+ V + DR+NAI N+LR++
Sbjct: 205 LMFSATVPREIEKLARDFQNDALRLETRGEAKQHNDISYQALSVTMRDRENAIFNMLRFY 264

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            ++ AI+FC TRA+V+     ++   F+VVALSGELSQQER+NALQ +RDGRA VCIATD
Sbjct: 265 ESRTAIIFCKTRANVNDLLSRMSGRGFRVVALSGELSQQERTNALQALRDGRANVCIATD 324

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           VAARGIDLP LELVIH +L +N E LLHRSGRTGR
Sbjct: 325 VAARGIDLPGLELVIHYDLPTNAETLLHRSGRTGR 359


>gi|304671|gb|AAA16339.1| DEAD-box protein [Drosophila melanogaster]
 gi|313850|emb|CAA80804.1| DEAD-box protein [Drosophila melanogaster]
          Length = 527

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/490 (27%), Positives = 214/490 (43%), Gaps = 38/490 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G    T +Q+  +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F + +  I    PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADPMLNGDFDESLSIIERCLPKTRQNLFF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN-----ILR 240
           SAT+   I   +             +   +  +      LV+     + ++         
Sbjct: 188 SATMKDFIKESSIFPIASDCFEWCEASAVRTVETLDHGYLVSADYDPDMVLIEALRKYRE 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L       V L G + Q+ER  AL   +  + R  IA
Sbjct: 248 ENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSRFKSNQIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P +ELV++  L   P+  +HR GRT RAGRKGMS+ +   P++++  A  
Sbjct: 308 TDVAARGLDIPSVELVMNHILPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLA-A 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEEEINTKLTEHPIDQRMVERIFMQVNVTRRESEMQLDNNCFDERAQNYRRKT--WIMEG 424

Query: 411 HDPEKIAAGFLRIHRAGLC-------------APEEITPVSLVSGRDRFRDDSRAFKVGG 457
            DP+++ A + +  +  L              A  E     L   R +  D +R  K G 
Sbjct: 425 KDPDQMEALYRKKQKDKLREIRRKRKLQHAESAASEEGKALLQDERFKSVDSARFEKKGK 484

Query: 458 GSRDNFKGSS 467
           G     +  +
Sbjct: 485 GRSRATQEYT 494


>gi|170086121|ref|XP_001874284.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651836|gb|EDR16076.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 517

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 123/458 (26%), Positives = 213/458 (46%), Gaps = 13/458 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     + LS+ G+  +TSVQ+  +   L  KD+L +A+TGSGKT+AF +     L    
Sbjct: 8   LSPQTLQGLSDMGFSTMTSVQQKSIPVLLAGKDLLGAARTGSGKTLAFLIPAVELL--HR 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    + I PTRELA+Q+    + L A       + IGG SV  ER  L  G +
Sbjct: 66  LKFKPMNGTGIIIITPTRELALQIFGVAKDLMAHHSQTFGIVIGGTSVRAERERLIKGVN 125

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH    KG    +LK +V+DEAD +L++GF ++++ I+   PK+ R  M 
Sbjct: 126 LLVATPGRLLDHLREAKGFVFRNLKGLVIDEADRILEVGFEEEMKSIISILPKEDRQTML 185

Query: 186 SATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +            ++       + V+        S +    V+     R   +   L+ 
Sbjct: 186 FSATQTTKVTDLARISLRPGPIHIDVDKEEATSTVSTLSQGYVVCPSDRRFLLLYTFLKK 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +  K  IVF S+  SV    +++      V+ L G+  QQ+R+N      +    +  +T
Sbjct: 246 NLKKKVIVFFSSCNSVKYHAELMNYIDVPVLDLHGKQKQQKRTNTFFEFINAETGILFST 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P ++ ++  +   +P + +HR GRT RAG+ G S+  + ++      R  +
Sbjct: 306 NVAARGLDIPRVDWIVQFDPPDDPRDYIHRVGRTARAGKVGKSLLFLLESELGFL-RYLK 364

Query: 362 EANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI---- 416
           EA V +     P+   A  +   +++LQ   FL     D  +      A +  +KI    
Sbjct: 365 EAKVPLNEFSFPADRIANVQSQLEKLLQKNYFLHQSAKDGFRSYLQAYASYSLKKIFDVN 424

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           A    ++ +A   +      +++  G    R   +  +
Sbjct: 425 ALDLTKVGKAFGFSVPPRVNLNIAPGNGSSRTGDKRRR 462


>gi|115398415|ref|XP_001214799.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
 gi|121737771|sp|Q0CL13|DBP3_ASPTN RecName: Full=ATP-dependent RNA helicase dbp3
 gi|114192990|gb|EAU34690.1| hypothetical protein ATEG_05621 [Aspergillus terreus NIH2624]
          Length = 493

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/393 (30%), Positives = 198/393 (50%), Gaps = 16/393 (4%)

Query: 3   IFENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++P+    + E L+   + + TS+Q A        +DV+  A+TGSGKT+AFGL   
Sbjct: 80  SFSHLPECNSNLYEQLNS--FKSPTSIQSATWPLLFGGRDVIGIAETGSGKTLAFGLPCL 137

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     + S    P+A+ I+PTRELA+Q+  +L+      G  VA   GGV    E+R
Sbjct: 138 KKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQKFAGPVGAKVACIFGGV-RKDEQR 196

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           ++   A+IVV TPGRL D      +++  ++ +VLDEAD MLD GF  DI+ I+   P  
Sbjct: 197 EVLKTANIVVATPGRLKDLQNDGSVDLGKVRYLVLDEADRMLDKGFEQDIKDIIQPMPVS 256

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           +R  +      P +     +    +        + +++ R ++ I     +V   +++  
Sbjct: 257 KRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGR 316

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +      GA+  + FC  +   +R  + L    F+V  + G+LSQQER  +L   + 
Sbjct: 317 LVQLLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKT 376

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G A V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG +G ++ +  +  
Sbjct: 377 GAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETD 436

Query: 353 QRRAERL---FREANVSVVWEPAPSVEAIRERD 382
           + ++  L    + A   V  E       ++++ 
Sbjct: 437 KAQSGALINVLKAAGQEVPEELLKFGGTVKKKQ 469


>gi|61563575|gb|AAX46760.1| putative DEAD-box family RNA helicase PL10 [Carassius auratus]
          Length = 582

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/382 (28%), Positives = 193/382 (50%), Gaps = 23/382 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   ++I   ++   Y   T VQ+  +     ++D++  AQTGSGKT AF L +
Sbjct: 201 IESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLLPV 260

Query: 59  ASTLLAENDRFS----------------PASAPLALAIAPTRELAVQVGRELEWLYAKTG 102
            S +  E    +                    P++L +APTRELA+Q+  E   +  ++ 
Sbjct: 261 LSQIFTEGPGEALQAMKNSAQENGKYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSH 320

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           V   V  GG  + ++ RDL+ G H++V TPGRL D +    + + +   +VLDEAD MLD
Sbjct: 321 VRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLD 380

Query: 163 LGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           +GF   I  I++          + +MFSAT    I  LA+++ ++ + + +        +
Sbjct: 381 MGFEPQIRRIVEQDTMPPKGLRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSEN 440

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I  + V V  +D+ + ++++L   G ++  +VF  T+         L    +   ++ G+
Sbjct: 441 ITQKVVWVEENDKRSFLLDLLNATGKESLTLVFVETKKGADSLEDFLYREGYSCTSIHGD 500

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL   R GR  + +AT VAARG+D+ +++ VI+ +LSS+ E  +HR GRTGR
Sbjct: 501 RTQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLSSDIEEYVHRIGRTGR 560

Query: 338 AGRKGMSVFVIPQNMQRRAERL 359
            G  G++            + L
Sbjct: 561 VGNLGLATSFFNDKNGNITKDL 582


>gi|16803490|ref|NP_464975.1| hypothetical protein lmo1450 [Listeria monocytogenes EGD-e]
 gi|47095401|ref|ZP_00233011.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964403|ref|YP_002350081.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|224499698|ref|ZP_03668047.1| dead/deah box ATP dependent helicase [Listeria monocytogenes
           Finland 1988]
 gi|224501609|ref|ZP_03669916.1| dead/deah box ATP dependent helicase [Listeria monocytogenes FSL
           R2-561]
 gi|226224051|ref|YP_002758158.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes Clip81459]
 gi|254827738|ref|ZP_05232425.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254829791|ref|ZP_05234446.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes 10403S]
 gi|254898384|ref|ZP_05258308.1| ATP-dependent RNA helicase, DEAD-box family (deaD) [Listeria
           monocytogenes J0161]
 gi|254912124|ref|ZP_05262136.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936452|ref|ZP_05268149.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801837|ref|YP_003413702.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284994979|ref|YP_003416747.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290894213|ref|ZP_06557182.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|16410879|emb|CAC99528.1| lmo1450 [Listeria monocytogenes EGD-e]
 gi|47016222|gb|EAL07145.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333673|gb|ACK39467.1| dead/deah box ATP dependent helicase [Listeria monocytogenes HCC23]
 gi|225876513|emb|CAS05222.1| Putative ATP-dependent RNA helicase, DEAD-box family (deaD)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258600117|gb|EEW13442.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609044|gb|EEW21652.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057399|gb|ADB68340.1| hypothetical protein LM5578_1592 [Listeria monocytogenes 08-5578]
 gi|284060446|gb|ADB71385.1| hypothetical protein LM5923_1544 [Listeria monocytogenes 08-5923]
 gi|290556210|gb|EFD89755.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293590095|gb|EFF98429.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|307571032|emb|CAR84211.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes L99]
          Length = 435

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|254442828|ref|ZP_05056304.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257136|gb|EDY81444.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 406

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 196/377 (51%), Gaps = 11/377 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           MK F+ +     +   + E+G +  T +QE  +   L+ + D +  AQTG+GKT AFGL 
Sbjct: 36  MKTFKELGVVADLIRGIEEKGILEPTEIQELAIPLLLKNEGDFVGQAQTGTGKTAAFGLP 95

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHR 116
           L   +     R        AL ++PTRELA Q+ ++L      T  +      GG  +  
Sbjct: 96  LLQRIDPTQKRV------QALVLSPTRELAKQIAKQLFHYTKYTAKIFTEAVAGGEKIEG 149

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L    HIVV TPGRL D ++ K +++S +  +VLDEADEML +GF+D++  IL+ +
Sbjct: 150 QIAALSRTTHIVVATPGRLIDLLKVKAVDLSTIDTLVLDEADEMLSMGFQDELNKILEFT 209

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSDRDNAI 235
              +R  +FSAT+   +T + + Y     +          + +I++   +  + ++ + I
Sbjct: 210 RGAKRTWLFSATMPKGVTRMIERYLSPDAKHVTVDRKNPVNKNIEHWYTVCTIEEKPDEI 269

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              ++    +  +VFC ++A V      L E  F+V  L G+LSQ++R   ++  R  R+
Sbjct: 270 ARFIKAQKGRRGVVFCRSKAGVQNIANELTERGFEVATLQGDLSQKDRDKVMRGFRKERS 329

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V ++TDV+ARGID+  L  V+H +L    E   HRSGRT RAGRKG+S+  I +   +R
Sbjct: 330 EVLVSTDVSARGIDVEGLAYVVHHQLPDQIEYYTHRSGRTARAGRKGISMAFITRGDVKR 389

Query: 356 AERLFREANVSVVWEPA 372
              L  E ++      A
Sbjct: 390 IRELQTELHIKFREIKA 406


>gi|82545029|ref|YP_408976.1| ATP-dependent RNA helicase SrmB [Shigella boydii Sb227]
 gi|187731766|ref|YP_001881357.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|81246440|gb|ABB67148.1| ATP-dependent RNA helicase [Shigella boydii Sb227]
 gi|187428758|gb|ACD08032.1| ATP-dependent RNA helicase SrmB [Shigella boydii CDC 3083-94]
 gi|320175854|gb|EFW50935.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae CDC 74-1112]
 gi|320186377|gb|EFW61111.1| ATP-dependent RNA helicase SrmB [Shigella flexneri CDC 796-83]
 gi|332092586|gb|EGI97658.1| ATP-dependent RNA helicase srmB [Shigella boydii 3594-74]
          Length = 444

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 181/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P      E+   +  +  L
Sbjct: 376 IEELRPKTRTPSEKQTGKPSKKVL 399


>gi|242050992|ref|XP_002463240.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
 gi|241926617|gb|EER99761.1| hypothetical protein SORBIDRAFT_02g040380 [Sorghum bicolor]
          Length = 502

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 174/369 (47%), Gaps = 17/369 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   Q + +A    G    T+VQ   +   L  +DVL  A+TGSGKT AF L +  
Sbjct: 77  TFADLGLSQWLVDACDALGMRRPTAVQRRCIPRALAGEDVLGIAETGSGKTAAFALPILH 136

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           ALA+APTRELA Q+  +   L A  G+     IGG     + + 
Sbjct: 137 RLGEDP------YGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLAQAKG 190

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L    H+VV TPGR+   ++         +  K +VLDEAD +LD+ F +++  I    P
Sbjct: 191 LSRRPHVVVATPGRIATLVKDDPDLAKVFARTKFLVLDEADRVLDVNFEEELRVIFGCLP 250

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           KKR+  +FSAT+S  + +L +     +         +    +  + + V    ++  +  
Sbjct: 251 KKRQTFLFSATMSDNLRSLLELSGNKSYFFEAYEGFKTVETLKQQYIHVPPQGKELHLWY 310

Query: 238 ------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                   +    ++AIVF S          +L E  +  VAL+   SQ +R  AL   +
Sbjct: 311 LLSIMKEKKEDPIRSAIVFVSKCNVCQYLDLLLEELGYPAVALNSHKSQAQRLLALNRFK 370

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  + I+TDV +RG+D+  ++LVI+ ++  +P + +HR GRT RA R G+++  + Q 
Sbjct: 371 SGQVPILISTDVGSRGLDIQTVDLVINYDMPMSPRDYIHRVGRTARASRGGLAISFVTQK 430

Query: 352 MQRRAERLF 360
                  + 
Sbjct: 431 DICLLHEIE 439


>gi|117645912|emb|CAL38423.1| hypothetical protein [synthetic construct]
 gi|208967749|dbj|BAG72520.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [synthetic construct]
          Length = 619

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 107/405 (26%), Positives = 191/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E  Q ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKPQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|85113073|ref|XP_964459.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
 gi|74654326|sp|Q7SEL0|PRP28_NEUCR RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp-28
 gi|28926242|gb|EAA35223.1| hypothetical protein NCU02803 [Neurospora crassa OR74A]
          Length = 728

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/425 (25%), Positives = 194/425 (45%), Gaps = 36/425 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 292 MRSWEESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL 351

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +  L     ++    P AL +APTREL  Q+  E +      G  V   +GG S+  
Sbjct: 352 LVYISELPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEE 411

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NGA I+V TPGRL D +  + L  S     ++DEAD M+D GF + +  ILD+ 
Sbjct: 412 QAFALRNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAM 471

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---------------- 220
           P            +P + +   + +    +  + +                         
Sbjct: 472 PVTNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGN 531

Query: 221 ---------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                     R   V+  D+    +  +          IVF + + +     + +    +
Sbjct: 532 AGEAVDTVEQRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGY 591

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R+G+  + +ATD+A RGID+PD+ LV++  +++N E+  
Sbjct: 592 SAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYT 651

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER--DAQ 384
           HR GRTGRAG+ G+++  +            ++  ++++S V +     EA + +    Q
Sbjct: 652 HRIGRTGRAGKSGVAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQNKPQKGQ 711

Query: 385 RILQD 389
           + L++
Sbjct: 712 KKLEE 716


>gi|195388290|ref|XP_002052813.1| GJ17767 [Drosophila virilis]
 gi|194149270|gb|EDW64968.1| GJ17767 [Drosophila virilis]
          Length = 835

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 190/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 412 SGFPPEIIEIIDTVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 471

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 472 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRL 531

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 532 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 591

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  +  
Sbjct: 592 KPDSEEAEDEKKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 651

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 652 ERTNQIVYMMGENDKRKKLMQILSAGIEPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 711

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 712 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 771

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G+++  + ++       L
Sbjct: 772 RAGKTGVAISFVTKDDSSLFYDL 794


>gi|71745728|ref|XP_827494.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70831659|gb|EAN77164.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 735

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 17/384 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++     +   +++ GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 288 VESFEDLFVEPALALNIAKCGYKEPTPVQRYGIPVCLNGNDLMACAQTGSGKTAAFLVPV 347

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+A+ +APTRELA+Q+  E+  L  +T +   V  GG     
Sbjct: 348 VHYILKNGVSPAKDRISHPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPT 407

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              +      I+V  PGRL D      ++ S +K ++LDEAD ML++GF + IE+++ S 
Sbjct: 408 RFEN-----DILVACPGRLKDIFDRNIVSFSCVKFLILDEADRMLEMGFEEQIEYLVASR 462

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--------NRQHSDIDYRAVLVAL 228
                      T+  + T   +        +             +   +       +   
Sbjct: 463 YSDMPSSEERQTLMFSATFPQRILNLAKRYLRPKYYLLTVGRVGSTTKNITQKLERVPEA 522

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             +D     I +       ++F  T+ S  +    L         + G+  Q +R  AL+
Sbjct: 523 EKKDKLFDIIYKQKQTDLVLIFVETKRSAEQLHSALKSSGIPSTTIHGDRRQSDREIALK 582

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             + G   + +ATDVA+RG+D+P++  VI  +L    ++  HR GRTGRAG KG++    
Sbjct: 583 DFKSGITPILVATDVASRGLDIPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGVATSFY 642

Query: 349 PQNMQRRAERLFREANVSVVWEPA 372
            +N +  A  L+          P 
Sbjct: 643 DRNNRNLAVELYHYLREHEQEVPM 666


>gi|261204717|ref|XP_002629572.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
 gi|239587357|gb|EEQ70000.1| DEAD/DEAH box RNA helicase [Ajellomyces dermatitidis SLH14081]
          Length = 587

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 98/415 (23%), Positives = 181/415 (43%), Gaps = 37/415 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQT--GSGKTVAFGL 56
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQT  GSGKT AF +
Sbjct: 130 VKSFDDAGLHPVMRENIKLCGYNVPTPIQAYAIPAVLAGNDLIAVAQTVKGSGKTAAFLI 189

Query: 57  ALASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAK 100
            + S L+ +  + +                    PL L +APTREL+ Q+  E   L  +
Sbjct: 190 PVLSKLMGKAKKLAARRPDLGNGFNESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYR 249

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADE 159
           + +   V  GG     +R +LQ G  +++GTPGRL D +    + ++  +K  ++DEADE
Sbjct: 250 SMLRPCVVYGGGPSREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKFTIIDEADE 309

Query: 160 MLDLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           ML   +  ++  ++     +     R M+  +           K    D VR+ I     
Sbjct: 310 MLHSDWEIELNKLMSGGDTNEDADHRYMMFSATFNKGCRELARKYLAADHVRIRIGRAGS 369

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            H ++  +        +  AI ++L        +VF +++A        L        ++
Sbjct: 370 AHLNVSQKIYYTDDDKKKEAIYDLLLSMPPSRTLVFVNSKAQADLLDDYLYNMGLPSTSI 429

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLH 330
             + +Q+ER +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +H
Sbjct: 430 HSDRTQREREDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSAAHGGIEEYIH 489

Query: 331 RSGRTGRAGRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAI 378
           R GRT R G +G++          ++     ++  E    V        P  + +
Sbjct: 490 RIGRTARIGNEGLASSFYNHERNSDIAADLVKILLECKQPVPDFLESEKPEGDDV 544


>gi|330900813|gb|EGH32232.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 459

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +PK+R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPKRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPAGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPASCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIPGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
 gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
          Length = 376

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 109/370 (29%), Positives = 189/370 (51%), Gaps = 3/370 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL+++ +   T++Q+ ++   L +KDVL  A+TGSGKT  + L + + L  + 
Sbjct: 8   LTPALLIALADQQFNEPTAIQQTVIPAILAKKDVLGIAKTGSGKTAGYVLPVLTNL--QQ 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
                      L + PTRELA QV    +         V        V    + +   G 
Sbjct: 66  SLGPKNRHANVLVLVPTRELAEQVKEVFKTFSTSLPEAVKTLAVYGGVSINTQMMALQGV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++VGTPGRL + +    +N+S ++ ++LDEAD+ML+LGF++++  I+   P KR+ ++F
Sbjct: 126 NVLVGTPGRLLELVAANSVNLSSVETLILDEADKMLNLGFKEEVNKIIALLPAKRQNVLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+S  I  + +    D V V I         I   A +V+   +   + ++++ H  K
Sbjct: 186 SATLSKDIEHIHQLLLHDPVVVKIEEGEDSLELITQTAYIVSEDKKGPFLRSLIKKHRMK 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+   V      L ++     A   + SQ  R+++L   + GR +V +ATD+ A
Sbjct: 246 QVLVFASSIHQVEAIVNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIKVLVATDLMA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ EL  +P++ +HR GRTGRAG  G ++ ++  N     E + ++   
Sbjct: 306 RGIDIDGLPYVINYELPRSPKDYVHRIGRTGRAGNTGEAISLVSHNELHHFEVIQKKMGK 365

Query: 366 SVVWEPAPSV 375
            V    + S+
Sbjct: 366 QVPLIDSESL 375


>gi|313633234|gb|EFS00103.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           N1-067]
 gi|313637832|gb|EFS03169.1| probable ATP-dependent RNA helicase YqfR [Listeria seeligeri FSL
           S4-171]
          Length = 435

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     D+ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|302416733|ref|XP_003006198.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
 gi|261355614|gb|EEY18042.1| ATP-dependent RNA helicase ded1 [Verticillium albo-atrum VaMs.102]
          Length = 676

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 175/388 (45%), Gaps = 44/388 (11%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F N  +   +   +    Y   T VQ+  +   +  +D++  AQTGSGKT  F   + S
Sbjct: 204 TFTNPPLDDHLISNIGLAHYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILS 263

Query: 61  TLLAENDRFSPASA------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
                     PA+A            P +L +APTREL  Q+  E      ++ V   V 
Sbjct: 264 QAFINGPSPVPANAAGGSFGRQRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVV 323

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            G   +  + R +                           LK +VLDEAD MLD+GF   
Sbjct: 324 YGVADIGSQLRQI-----------------------ERETLKYLVLDEADRMLDMGFEPQ 360

Query: 169 IEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           I  I         + R+ LMFSAT    I  LA+++ KD V +++        +I  +  
Sbjct: 361 IRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE 420

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V   D+ + +++IL  HGA   ++F  T+      +  L    F   ++ G+ +Q+ER 
Sbjct: 421 YVEDVDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERE 480

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            AL+  R+GR  + +AT VAARG+D+P++  V++ +L ++ ++ +HR GRTGRAG  G S
Sbjct: 481 RALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGHS 540

Query: 345 VFVIPQNMQ---RRAERLFREANVSVVW 369
                +  +   R    L +EAN  V  
Sbjct: 541 TAFFNRGNRGVVRELLELLKEANQEVPQ 568


>gi|229553792|ref|ZP_04442517.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
 gi|229312844|gb|EEN78817.1| ATP-dependent RNA helicase [Lactobacillus rhamnosus LMS2-1]
          Length = 448

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/430 (24%), Positives = 191/430 (44%), Gaps = 13/430 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   G    T +Q+ ++   LR ++++  +QTGSGKT AF + L S +    
Sbjct: 10  LKPFVIAGLDAMGITQPTPIQKKVIPALLRGENLVGQSQTGSGKTHAFLVPLLSLVDPNE 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           D      A   +  AP+RELA Q+    + L        +  +  G     +  +   + 
Sbjct: 70  D------ATQVVITAPSRELANQIYAVAQQLTQTEPAIRISRLVGGMDKQKQIDKLQAHQ 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+ +GTPGR+ D I+   L  + ++  V+DEAD  LD+GF + ++ I  S P+  +M +
Sbjct: 124 PHVAIGTPGRILDMIKRYDLVPASVRHFVVDEADMTLDMGFLETVDAIASSFPEHLQMAV 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSATI   +    + Y      + +  ++     ++   +     D++  I  ++     
Sbjct: 184 FSATIPQKLEPFLRKYMDHPTVIELKPQSVIADTVENILIAAKGRDKNELIYQLVTMGHP 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  +ATD+A
Sbjct: 244 FLVLIFANTKTSVDAIHDYLKHQGLKVAKIHGGVQPRERRRIMKEVADLKYQYVVATDLA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + +VI+AE+  + E  +HR GRTGR G  G ++ +     + +   L     
Sbjct: 304 ARGIDIKGVSMVINAEIPRDQEFFIHRVGRTGRNGLPGTAITLYEPGQEDQIAELE-HMG 362

Query: 365 VSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +    +     E +    R R  QR  +      +I+G  KK     +  +  +   A  
Sbjct: 363 IKFKPKTIQKGELVDTYDRNRRVQRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTAVL 422

Query: 421 LRIHRAGLCA 430
           L   R    A
Sbjct: 423 LERKRNAKVA 432


>gi|170029482|ref|XP_001842621.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
 gi|167863205|gb|EDS26588.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Culex
           quinquefasciatus]
          Length = 815

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 116/398 (29%), Positives = 193/398 (48%), Gaps = 32/398 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---ST 61
              P+ + E + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L      
Sbjct: 392 SGFPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQG 451

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     + +    P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L
Sbjct: 452 LPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRL 511

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P    
Sbjct: 512 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNL 571

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 572 KPDTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 631

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    +V  +++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 632 ERTEQIVHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHG 691

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 692 GKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 751

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           RAG+ G ++    ++       LF +    +V  P  S
Sbjct: 752 RAGKTGCAISFCTKDDSH----LFYDLKQIIVASPVSS 785


>gi|313623752|gb|EFR93892.1| probable ATP-dependent RNA helicase YqfR [Listeria innocua FSL
           J1-023]
          Length = 435

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
 gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Penicillium marneffei
           ATCC 18224]
          Length = 826

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 198/464 (42%), Gaps = 17/464 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 310 NLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYR 369

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     IGG S+  +   L+   
Sbjct: 370 QRKVPTSR---VAILMPTRELAVQCFNVATKLATYTDITFCQLIGGFSLREQENILKKRP 426

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 427 DIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 486

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + ++ +    +              R  +++++ + 
Sbjct: 487 FSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQ 546

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F   +    R   +      +   L G +SQ++R  +++  RDG+    +AT
Sbjct: 547 VYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLAT 606

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+  +E VI+ E     E  LHR GRT RAGR G +  +     ++      +
Sbjct: 607 DVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAAVK 666

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                           I  R     +QD L  +    D +  +D +L +   EK  A   
Sbjct: 667 AGKTQ--------GAKIISRVIGSEIQDELATEI--EDLQDEIDAILREEKEEKELAQVE 716

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
                G    +  T +     R  F  +    +          G
Sbjct: 717 MQTSKGENLLKHQTEIMSRPKRTWFETEKEKQEAQKRGLIELNG 760


>gi|289664841|ref|ZP_06486422.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 493

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 110/373 (29%), Positives = 186/373 (49%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF + + + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVVNRLLNR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  L  G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLLQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|270290969|ref|ZP_06197192.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
 gi|270280365|gb|EFA26200.1| ATP-dependent RNA helicase YqfR [Pediococcus acidilactici 7_4]
          Length = 453

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 108/390 (27%), Positives = 184/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+  N+   + +AL + G+V  T VQE ++      + V+  +QTGSGKT AF L +
Sbjct: 1   MNEFQKFNLKPFLMQALDQIGFVKPTPVQERVIPLIAEGQSVVGQSQTGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT---GVVVAVCIGGVSVH 115
            + +          +A  A+   P+RELA Q+    + L A +     +     G     
Sbjct: 61  FNQIDPAK------NAIQAVITTPSRELAYQIYEAAKQLAAASETPIEIGNYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +   +   IV+GTPGR+ D ++ + LN   ++ +V+DEAD  LD+GF   ++ I  S
Sbjct: 115 QIAKLEHHQPAIVIGTPGRVLDLLQARALNFRQVRYLVIDEADMTLDMGFLSAVDQIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+  +ML+FSATI   +    + Y +      I         I    +     D++N I
Sbjct: 175 MPENLQMLVFSATIPQQLNVFLQKYMEHPAIEEIPVATTISPTIKNILISTKSQDKNNLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +T+      T  L      V  + G +  +ER   ++ +   R 
Sbjct: 235 YQLLTMGEPYLALVFTNTKERADELTNYLKSQGLPVAKIHGGIPPRERKRIMKDIHRLRY 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  + LVI+ ++ ++ E  +HR GRTGR G  G ++ +   N +  
Sbjct: 295 QYVVATDLAARGIDIEGVSLVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYMPNEEAE 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
              + +   V  + +   + E +   D QR
Sbjct: 355 VAEVEK-MGVKFIPQQLRNHELVDTYDRQR 383


>gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis thaliana]
          Length = 411

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 118/376 (31%), Positives = 189/376 (50%), Gaps = 11/376 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF---SPASAPL 76
           +   + +Q       L  +D++  A+TGSGKT+AFG+     +L +N +    S    P 
Sbjct: 8   FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 67

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
            L ++PTRELAVQ+   L       G+      GG S   +   +++G  IV+GTPGRL 
Sbjct: 68  CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 127

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D I    L +S +  VVLDEAD MLD+GF + + FIL ++ K R+M+MFSAT    +  L
Sbjct: 128 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 187

Query: 197 AKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           A+ +        I      + N     I       A   R  A++           +VF 
Sbjct: 188 AQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFA 247

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +    R  + L +  ++ V++ G  +Q ER+ +L + ++G   + +ATDVAARG+D+P
Sbjct: 248 LYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIP 307

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVV 368
           D+E+VI+       E+ +HR GRTGRAG+KG++        +  A  L    REA   V 
Sbjct: 308 DVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVP 367

Query: 369 WEPAPSVEAIRERDAQ 384
            +       +++++++
Sbjct: 368 ADLLKFGTHVKKKESK 383


>gi|294875381|ref|XP_002767294.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
 gi|239868857|gb|EER00012.1| RNA helicase-1, putative [Perkinsus marinus ATCC 50983]
          Length = 1227

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 168/383 (43%), Gaps = 12/383 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +   I   L  +G      +Q   +   L  +DV+  A TGSGKT+A+ L +
Sbjct: 495 IKSFAMAGLDVRILRMLDRKGITTPFPIQMQAIPALLCGRDVIAIAPTGSGKTLAYLLPM 554

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              ++A+   F     P+ L IAPTRELA+Q+  + E L     +  A   GG  +  + 
Sbjct: 555 VRHVMAQPPLF-FNEGPIGLVIAPTRELALQINEQAEALCHAVNLKCACAYGGGIMGPQL 613

Query: 119 RDLQNGAHI---VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             L+ G HI     G    +     GK  N+  +  V LDEAD M D+GF   I  +L +
Sbjct: 614 SKLKAGCHILVATPGRLIDVLTLSNGKVTNLRRVSTVTLDEADRMFDMGFEPQISMVLRN 673

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R+  MFSAT  P +  LA+      V V I       +++  + V+V   +     
Sbjct: 674 INPARQTCMFSATFPPHVEGLARQSLYKPVEVVIGDSGSAATNVKQKVVVVRDEEERFNN 733

Query: 236 VNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           +  L    A +   +VF + +  V      L ++ +  + L G   QQ+R   +   +  
Sbjct: 734 LLKLLGEWADHGSILVFFTKQDDVDGMYMRLLDYGYACLTLHGGQDQQDRDGTIDDFKKR 793

Query: 294 RARV---CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +       +AT VAARG+D+     VI+     + E+ +HR GRTGRAG  G +  +I  
Sbjct: 794 KPPPANILLATSVAARGLDVKHCICVINYTPPDHAEDYVHRVGRTGRAGNVGFAYTLINS 853

Query: 351 NMQ-RRAERLFREANVSVVWEPA 372
           + +   A  L      +    PA
Sbjct: 854 STEGEYASELVEVLKAASQEVPA 876


>gi|123500450|ref|XP_001327863.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121910798|gb|EAY15640.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 478

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/384 (27%), Positives = 184/384 (47%), Gaps = 11/384 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDL--REKDVLVSAQTGSGKTVAFGLALASTLL 63
           ++P  + + +   G+   + +Q   +        + V+  AQ+G+GKT AF + + S + 
Sbjct: 97  DLPPALLQGVYSYGFRAPSEIQAIAIGAIRDPSNRHVIAQAQSGTGKTGAFSIGVLSKID 156

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ- 122
                        AL +APTRELA Q+    + + ++   +      G +        + 
Sbjct: 157 VSQ------KTTQALVLAPTRELATQIFNVFKEIGSRIPGLDIAIFIGGAQRVVDAQARA 210

Query: 123 -NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +  HI + TPGR  D I    L + + K  VLDEAD+ML   F + +  I++  P+  +
Sbjct: 211 ASHPHICICTPGRALDLIVSGHLRVQNFKMAVLDEADQMLSDNFIEQVNDIMEYFPEDVQ 270

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILR 240
           +L+FSATIS +I  +   +  D  R+ I  E      I      +   S++ + +++I  
Sbjct: 271 ILLFSATISQSIFHIMNTFMNDPFRILIKKEQLTLEGIKQFYVDVQETSNKFDCLLDIYG 330

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               + AI+F +++ +V   ++ L +H F V  +   L Q ER   ++  R G ARV I+
Sbjct: 331 SVSIQKAIIFANSKNAVDYISEQLQQHGFGVAPIHAGLDQLERDRIMRDFRTGTARVLIS 390

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+ ARGID+  + LVI+ EL    E  +HR GR+GR GRKG+++ +         E L 
Sbjct: 391 TDLLARGIDVQQVTLVINFELPKKLEQYIHRIGRSGRYGRKGVAINICDHEDMNVIEMLK 450

Query: 361 REANVSVVWEPAPSVEAIRERDAQ 384
                ++   P+     + E +AQ
Sbjct: 451 NHYMTTINELPSDIERVVNEANAQ 474


>gi|324506443|gb|ADY42751.1| ATP-dependent RNA helicase DDX17 [Ascaris suum]
          Length = 543

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 180/379 (47%), Gaps = 13/379 (3%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE    N P  I + L    +   T +Q       +  +D++  A+TGSGKT+AF L  
Sbjct: 111 VFEFTEANFPAPITDLLYGS-FQKPTIIQSISWPIAMSGRDIVSIAKTGSGKTLAFILPA 169

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +  R S    P  L + PTRELA QV    +      G  +    GG     + 
Sbjct: 170 IVHTANQQAR-SHREGPSVLVLLPTRELAQQVQDVAKDYCKVMGQSLTCLFGGAPKSGQA 228

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  +++ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+     
Sbjct: 229 RDLERGVDVIIATPGRLMDFLESGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRP 288

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNA--- 234
            R+ LMFSAT    +  LA ++Q DA  +N+ S     + +I     ++  S +      
Sbjct: 289 DRQTLMFSATWPKDVRKLAMDFQTDAAHLNVGSLELAANHNITQIVEVLEESSKQQRLIS 348

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           I++ +        I+F  T+      T+ +    +  + + G+  Q ER  AL   + G+
Sbjct: 349 ILSDIMSEPECKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALGEFKAGK 408

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ + S+N E+ +HR GRTGR  ++G +          
Sbjct: 409 TPILLATDVAARGLDVDDIKYVINYDYSNNSEDYVHRIGRTGRCEKRGTAYTFFTYANGP 468

Query: 355 RAERLFR---EANVSVVWE 370
           +A  L +   EAN  V  E
Sbjct: 469 KARDLIKVLQEANQIVPPE 487


>gi|302552861|ref|ZP_07305203.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302470479|gb|EFL33572.1| ATP-dependent RNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 490

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/378 (31%), Positives = 188/378 (49%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +      
Sbjct: 78  LPERLLTALGAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR---TA 134

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + + +  PLAL + PTRELA QV   L        + +   +GG+S+ R+ + L +GA 
Sbjct: 135 GQRAESRQPLALVLVPTRELAQQVTDALTPFARALRLRLTTVVGGMSIGRQAKALHSGAE 194

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++FS
Sbjct: 195 VVVATPGRLKDLIDRGDCRLDRVAITVLDEADQMTDMGFMPQVTALLDQVAPGGQRMLFS 254

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y  D V  ++       + +++  + V   D+               
Sbjct: 255 ATLDRNVDRLVRAYLHDPVVHSVDPSAGAVTTMEHHLLHVEDDDKHATTTQ--IAARDGR 312

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG   V +AT+VAAR
Sbjct: 313 VIMFLDTKHAADRLAKKLLAVGVRASALHGGKSQSQRTRTLARFKDGEVTVLVATNVAAR 372

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + +L+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL  +A ++
Sbjct: 373 GIHVDNLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTRLMADAGIT 432

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P V  +R  + +
Sbjct: 433 ------PQVTRVRSGEPE 444


>gi|301344661|ref|ZP_07225402.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB056]
 gi|301512465|ref|ZP_07237702.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB058]
 gi|301595454|ref|ZP_07240462.1| putative ATP-dependent RNA helicase [Acinetobacter baumannii AB059]
          Length = 347

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 122/345 (35%), Positives = 180/345 (52%), Gaps = 9/345 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   ++ + + +AL   G+ N T VQE  +   L  KD+LVS+QTGSGKT AF L   
Sbjct: 3   KTFAEFSLHETLQQALEGLGFTNPTPVQEQSIPAALEGKDLLVSSQTGSGKTAAFLLPTL 62

Query: 60  STLLAE------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
             L  +       +R    + P  L + PTRELA QV ++          V    I G  
Sbjct: 63  HNLAGQDTFVPFKERMKAVTQPSILVLCPTRELAQQVSQDAIAFVRHMKGVRIAAIMGGM 122

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              ++     GA +VV TPGRL D +  + L +  + A+++DEAD MLDLGF +D+E I 
Sbjct: 123 PFGKQIQQLKGAQVVVATPGRLLDLVNRRQLKLDKVDALIVDEADRMLDLGFSEDLEAIS 182

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-LSDRD 232
           D +  + + LMFSAT +  I  LA+    +  R+ I + +  ++DI            + 
Sbjct: 183 DLAANRGQTLMFSATFADRIIRLAERMMNEPERIAIETGHSTNTDITQTLHWTDGFEHKK 242

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + + L       A+VF ST+       + LAE    VVAL G + Q  R+  L+ +R+
Sbjct: 243 KLLTHWLADETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSIRE 302

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
           GRA++ +ATDVAARG+D+P +  VI+  L    E+ +HR GRTGR
Sbjct: 303 GRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGR 347


>gi|27469538|gb|AAH41801.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 192/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|88802866|ref|ZP_01118393.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
 gi|88781724|gb|EAR12902.1| ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
          Length = 447

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 116/425 (27%), Positives = 198/425 (46%), Gaps = 11/425 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           + + L++   +  T +QE ++   L +K D++  A+TG+GKT AFGL L   +   ND  
Sbjct: 14  LQQRLNDLKIITPTEIQEKVIPIVLNDKEDIVALAKTGTGKTAAFGLPLLQLIDVNND-- 71

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNGAHIV 128
               A  A+ +APTREL  Q+   L      T  V +A   GG+ +  +   L+   HI+
Sbjct: 72  ----AIQAIILAPTRELGQQIAANLISFAEHTSQVSIATLCGGIPIKPQIERLKEATHII 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGRL D ++ + ++I  +   +LDEADEM+          I +    +R  L  +  
Sbjct: 128 VATPGRLADLVKREAIDIKSISYFILDEADEMVTALKEGLDSIIKEIPKARRTFLFTATL 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
                  +        +++        H  ID++ V+VA  ++   +++ L     +  I
Sbjct: 188 PGTLKQLIQNYMAPKVIQIEANMTTLGHQGIDHQYVVVAPIEKLEVLLHFLNSKAGQRGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+A+V++ +K LA + F   A+ G L+Q  R   +   RDG   + +ATD+AARGI
Sbjct: 248 IFCKTKAAVNKLSKNLAINKFSSGAIHGSLTQGIRDRIMGQFRDGYIDILVATDLAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  V++  L       +HRSGRT RAG  G+S+ +I Q   +      +  ++   
Sbjct: 308 DVKDLSYVVNYHLPDTYGAYVHRSGRTARAGASGLSLTIIQQEELKDISDFEKALDIRFE 367

Query: 369 WEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
                  ++I E +A      +       +I  D K  +  +      E++    L  + 
Sbjct: 368 IFKKADAKSIEENNALIWANKIFKTKVNKTIPEDFKAQIKTIFHHLTKEELVDKILSDYM 427

Query: 426 AGLCA 430
           A +  
Sbjct: 428 ANIKN 432


>gi|315079878|gb|EFT51854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
          Length = 491

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TVVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 381

Query: 367 VVW 369
            V 
Sbjct: 382 PVE 384


>gi|332020434|gb|EGI60854.1| Putative ATP-dependent RNA helicase DDX52 [Acromyrmex echinatior]
          Length = 558

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 151/429 (35%), Gaps = 20/429 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +KI   + + +   +   GY+  T +Q   +   L  + +L  A TGSGKT AF L +  
Sbjct: 133 LKINYQVSENLLNNMKNSGYLYPTPIQMQAIPIMLEGRQILACAPTGSGKTAAFLLPIIH 192

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L     R        A+ + PTRELA Q  RE   L       + +         +   
Sbjct: 193 SL-----REPQKKGFRAVILNPTRELAKQTYRECLKLSDGCDFRIHIISKVNQALTKYGP 247

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +    ++ T  +    +  +      L  V     DE  D  F + I    +   +  
Sbjct: 248 SSSQKFDILITTPKRLVFLLNQDPPAISLNNVEWLIVDEA-DKLFEEGIRGFREQLEEIT 306

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---------VLVALSDR 231
           +  + +       +           R N+             A          + +   +
Sbjct: 307 KACVSTNLRCSMFSATNTPAVSKWCRRNMKGLITVTVGQRNAAADLVDQKLLFVGSERGK 366

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                NI++   +   +VF  ++         L      V  +  + +  +R N ++  R
Sbjct: 367 LVEFRNIIQKGISPPVLVFVQSKERAQELFNELIYDGINVDVIHADRTMTQRDNTVRCFR 426

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G+  V I T++  RGID   + LVI+ +   +  + +HR GRTGRAG KG +V    Q 
Sbjct: 427 EGKIWVLICTELMGRGIDFKGVNLVINYDFPPSAISYIHRIGRTGRAGHKGKAVTFFTQQ 486

Query: 352 M---QRRAERLFREANVSVVWEPAPSVEAIRE--RDAQRILQDPLFLDSIQGDEKKMVDV 406
                R    + R +   V        +  ++  R  +R       + ++   ++     
Sbjct: 487 DTVNLRSIAAVLRASGCDVPDYMLAMKKHSKKERRKLERTAPTREKILTVPTYKRHKRKS 546

Query: 407 LLAKHDPEK 415
            + K    +
Sbjct: 547 CIEKKSELE 555


>gi|145544585|ref|XP_001457977.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425796|emb|CAK90580.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/420 (26%), Positives = 195/420 (46%), Gaps = 16/420 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           + L  RG  NL  +Q+          D++   +TGSGKT+A+ L +   +          
Sbjct: 38  KVLESRGIANLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPILERI--RGLGLKQN 95

Query: 73  SAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             P  L + PTRELA+QV  E   + + +    +    GG  +  +   ++ G  IVVGT
Sbjct: 96  KNPYVLVLLPTRELAIQVTTEFNSILHKENEYRIYSIYGGTDLRNQIDQVRQGCEIVVGT 155

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM-FSATIS 190
           PGR+ D +  K L +  ++ VVLDEAD+ML+ GF+++IE I+     ++  ++ FSATI 
Sbjct: 156 PGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNDRKIQMLLFSATIP 215

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN-----AIVNILRYHGAK 245
             +  L++ Y +   +     +  +               ++        V  +      
Sbjct: 216 DWVKELSQKYMEANTKHINLIKRHETQTSTTVKHYALQCAKNQLTGAIGDVVSVYGGRHA 275

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+FC T+   +               L G++ QQ+R+   +  ++G+ +  +AT+VAA
Sbjct: 276 RTIIFCETKRECNEIILHSKLPAETQ-PLHGDIPQQQRTVTFEGFKNGKFKCLVATNVAA 334

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D P ++L+I      + E+ +HRSGRTGRAG+ G+ +    +      ER+ R A +
Sbjct: 335 RGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGICITFYSKKDMSLIERVERVAKI 394

Query: 366 SVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP-EKIAAGFL 421
             +   AP  + I +   RD Q  LQ  +    I    + +   +L++ DP E +A    
Sbjct: 395 KFIKISAPQHQDIIKASSRDLQTSLQ--VVSKEIVDLFQPVAQEILSRCDPVEALARALA 452


>gi|320164395|gb|EFW41294.1| DEAD box ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC
           30864]
          Length = 875

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 104/407 (25%), Positives = 180/407 (44%), Gaps = 38/407 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P  I + +++ GY   + +Q   +   L+ +DV+  AQTGSGKT AF + L    S + 
Sbjct: 446 LPTEILDIITDLGYTEPSPIQRQAIPIGLQNRDVIGIAQTGSGKTAAFVIPLLVWVSRIP 505

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 +    P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 506 RRLREQTVDHGPFAIIMAPTRELAQQIEVETLKFANPMGLRTVCVIGGLSREEQAFQLRL 565

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF------------ 171
           G  I++ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++             
Sbjct: 566 GCDIIIATPGRLIDILENRYLVLNRCTYIVLDEADRMIDMGFEPDLKKVLDFFPVSNMRP 625

Query: 172 ----------ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS---- 217
                     +   + K   M + S   +    T+        +   +A +  +      
Sbjct: 626 TDEPDEALDAVTYHTQKFENMDIDSIVKTRYRQTVMFTATMPPLVQRLAQQYMRKPAVVT 685

Query: 218 ---------DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
                     +     ++  +++   ++ IL         +F + +       K L +  
Sbjct: 686 IGSAGQTVDQVTQVVEIMTEANKRKRLLEILGEEHEPPIFIFVNQKKGCDLLAKSLEKLG 745

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           ++V +L G  +Q++R  AL   + G   + +ATDVA RGID+ D+ LVI+ ++S   +  
Sbjct: 746 YRVASLHGGKTQEQRQAALDGFKSGDLDLLVATDVAGRGIDIKDVSLVINYDMSKTVQEY 805

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
            HR GRTGRAG+KG+++  +          L +    S V +  P +
Sbjct: 806 THRIGRTGRAGKKGLAITFLTNEDTGVYYELKQILINSPVSKCPPDL 852


>gi|148543767|ref|YP_001271137.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           reuteri DSM 20016]
 gi|184153173|ref|YP_001841514.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148530801|gb|ABQ82800.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
           20016]
 gi|183224517|dbj|BAG25034.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 457

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 15/461 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   +  A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + 
Sbjct: 4   KKFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S +  E+          A+   P+RELA Q+     +L         +     G    H+
Sbjct: 64  SKIKPEDQTV------QAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    
Sbjct: 118 VDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHF 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +M++FSATI   +    K Y ++ V   I +E   + D+D   +     DR+  I 
Sbjct: 178 PNDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIY 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+    + T+ L     +V  + G L  + R   ++ +RD   +
Sbjct: 238 RLLTLGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQ 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR G KG ++ +         
Sbjct: 298 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLI 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            +L  E  V  V +   + + +   D  R        + +        K     +     
Sbjct: 358 AKLE-ERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYK 416

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++I        +                 R +     R  +
Sbjct: 417 KRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR 457


>gi|116872882|ref|YP_849663.1| DEAD-box ATP dependent DNA helicase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|315303187|ref|ZP_07873846.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
 gi|116741760|emb|CAK20884.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|313628444|gb|EFR96918.1| probable ATP-dependent RNA helicase YqfR [Listeria ivanovii FSL
           F6-596]
          Length = 435

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKFSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     D+ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|302784512|ref|XP_002974028.1| hypothetical protein SELMODRAFT_874 [Selaginella moellendorffii]
 gi|300158360|gb|EFJ24983.1| hypothetical protein SELMODRAFT_874 [Selaginella moellendorffii]
          Length = 457

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 114/417 (27%), Positives = 190/417 (45%), Gaps = 16/417 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +P  Q+  + L +  YV +T +Q A L   L  +D+L +A+TGSGKT+AF + + 
Sbjct: 1   TLFQQLPLSQLTLDGLRDAKYVTMTDIQRAALPHALCGRDILGAAKTGSGKTLAFLIPVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R++      AL I+PTRELA+Q+  EL  +     +   + IGG       +
Sbjct: 61  EKLY--RLRWTSMDGVGALIISPTRELAMQIFDELRKVGKFHDLSGGLLIGGRKDVSTEK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              NG +I+V TPGRL  H+      + S LK +VLDEAD +LD+GF   +  I+   PK
Sbjct: 119 QSVNGLNILVCTPGRLLQHMHETVNFDCSPLKLLVLDEADRILDMGFAGTLNQIIAQIPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+  +FSAT + ++  LA+   +      V+  S     + +    ++V L  + + + 
Sbjct: 179 ERQTFLFSATQTRSVQDLARLSLQSPEYLAVHAESAVATPARLQQTVMVVPLDQKIDTLW 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++ H     +VF S+   V    +        V         ++     A     +  
Sbjct: 239 SFIKSHLRAKVLVFLSSCKQVKFVYEAFKHLRPGVPLTCLHGRLRQGGRLDAFYKFVEAE 298

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P ++ V+ A+   +    +HR GRT R    G S+ ++  +  +
Sbjct: 299 YAVMFATDIAARGLDFPTVDWVVQADCPEDVATYIHRVGRTARYKASGRSLLLLSPSETK 358

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               L  EA + +            E+  Q + Q    L S   D K M       +
Sbjct: 359 MV-ALLEEAKIPIKVLKP------NEKKIQSVSQLISGLLSKNADLKHMAQRAFTTY 408


>gi|289619768|emb|CBI54051.1| unnamed protein product [Sordaria macrospora]
          Length = 507

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 180/382 (47%), Gaps = 27/382 (7%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + EA    GY N T +Q   +   L+ +D++  A+TGSGKT AF L +   LL +   
Sbjct: 106 DALCEACERLGYKNPTPIQAESIPLALQNRDIIGIAETGSGKTAAFALPILQALLDKPQP 165

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   AL +APTRELA Q+ +  E L +   +  A+ +GG+ +  +   L    H++
Sbjct: 166 ------LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMDMVTQAIALGKKPHVI 219

Query: 129 VGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH  + KG ++  ++ +V+DEAD +LD+ F   +E IL   P++RR  +FSA
Sbjct: 220 VATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKILKFLPRERRTFLFSA 279

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S  + +L +   +D ++V++++             +       +  +  L        
Sbjct: 280 TMSSKVESLQRASLRDPLKVSVSTNKYATVSTLKSNYVFIPHMHKDTYLVYLC------- 332

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
                            A   ++    +       R  AL   R G   + +ATDVAARG
Sbjct: 333 ---------NDALPSCSAPSAWEPSPSTVVSRSPSRLGALNKFRAGSREILVATDVAARG 383

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P+++ VI+ +L  + +  +HR GRT RAG+ G ++ ++ Q       R+       +
Sbjct: 384 LDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDLEIWLRIEAALGHKL 443

Query: 368 VWEPAPSVEAI----RERDAQR 385
              P    E +    R  +AQR
Sbjct: 444 DEYPLEKDEVMVFKPRVEEAQR 465


>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908200|ref|ZP_07125666.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
 gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300894627|gb|EFK87983.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri SD2112]
          Length = 467

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 196/461 (42%), Gaps = 15/461 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   +  A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + 
Sbjct: 14  KKFADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIF 73

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S +  E+          A+   P+RELA Q+     +L         +     G    H+
Sbjct: 74  SKINPEDQTV------QAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQ 127

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    
Sbjct: 128 VDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHF 187

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +M++FSATI   +    K Y ++ V   I +E   + D+D   +     DR+  I 
Sbjct: 188 PDDLQMMVFSATIPQKLRPFLKKYMENPVIEEIPTEAVINPDVDNWLMSTKGQDRNQLIY 247

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+      T+ L     +V  + G L  + R   ++ +RD   +
Sbjct: 248 RLLTLGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQ 307

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR G KG ++ +         
Sbjct: 308 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLI 367

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            +L  E  V  V +   + + +   D  R        + +        K     +     
Sbjct: 368 AKLE-ERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYK 426

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++I        +                 R +     R  +
Sbjct: 427 KRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR 467


>gi|145547076|ref|XP_001459220.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427044|emb|CAK91823.1| unnamed protein product [Paramecium tetraurelia]
          Length = 556

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 103/422 (24%), Positives = 204/422 (48%), Gaps = 10/422 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  + +   +AL +  +  +T +Q   +   L+ +DVL +A+TGSGKT+AF +   
Sbjct: 74  KKFTDFALCEPSKKALEKMNFTKMTHIQARAIPHLLKGRDVLGAAKTGSGKTLAFLVPAL 133

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L    ++F   +    + + PTRELA Q+    + L       + + IGG +   E  
Sbjct: 134 ELLY--KNQFQQKNGTGIIVLTPTRELAQQIFDVAKDLLFYHQKTLGLLIGGANRKEEAI 191

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ G +I++ TPGRL DH++        +L+ +++DEAD++L +G+ +++  IL+  P 
Sbjct: 192 RLQKGVNILIATPGRLLDHLQNTKGFIYHNLQCLIIDEADQLLKIGYEEEMNEILNLLPS 251

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           +R+ ++FSAT +  +  LA+      + + +    ++ +    +   V+V    +   + 
Sbjct: 252 ERQTVLFSATQTKKVDDLARLSLNQPIYIGVDDIAQEATVSGLEQGYVIVEADKKFLLLF 311

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+ +  K  +VF S+  SV    ++L      V+ + G+  Q +R+N      + +  
Sbjct: 312 TFLQLNSDKKIMVFMSSCNSVKFHAELLNFVDMPVLDIHGKQKQSKRTNTYYEFCNAKKG 371

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
           V + TDVAARG+D+P++  +I  +   + +  +HR GRT R     G ++  +    +  
Sbjct: 372 VLVCTDVAARGLDIPEVHWIIQYDPPDDTKEYIHRVGRTCRGLNSSGKALIFLLPEEKGY 431

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
              L + A V +     PS + A  +   +++++   FL+    +  +        H  +
Sbjct: 432 LGHL-KLAKVVMNEFEFPSEKLANIQEQFEKLIEKNYFLNKSAFEAYRSYLHSYQSHSLK 490

Query: 415 KI 416
            +
Sbjct: 491 DV 492


>gi|26334341|dbj|BAC30888.1| unnamed protein product [Mus musculus]
          Length = 669

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 71  FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQI 188

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 189 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 248

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 249 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 308

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 309 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 367

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 368 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 428 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 458


>gi|116511271|ref|YP_808487.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106925|gb|ABJ72065.1| Superfamily II DNA and RNA helicase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 446

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 110/458 (24%), Positives = 199/458 (43%), Gaps = 18/458 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N    I + L    +   T VQ+ ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRE 117
             +  E D         A+  AP+RELA Q+ +  +      G +       G     + 
Sbjct: 61  QNINPELDEV------QAVITAPSRELATQIYKAAQEFVKVNGKIRVSNFVGGTDKARQI 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++      HIV+GTPGR+ D ++   L +   +  V+DEAD  LD+GF  D++ I  S  
Sbjct: 115 KKLEAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y  + V   IA++      I+   V    S  +  ++ 
Sbjct: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+  V      L  +  +V  + G++  +ER   +  +++   + 
Sbjct: 235 LTKALNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  +I+ E+  +    +HR GR+GR G +G ++ +   +      
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +   V+   +     E +   D  R  +     D I    +  +     K  P    
Sbjct: 355 EIEK-MGVTFQPKAVKDGEIVDSYDRDRREKRTKKQDEISLATRGALAKGKKKVKP---- 409

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
                  RA     EE    +  + R++    +R  + 
Sbjct: 410 ----GYKRAIKWQIEEENKKNRRAERNKNARKTRDSRK 443


>gi|317028056|ref|XP_001400485.2| DEAD/DEAH box RNA helicase [Aspergillus niger CBS 513.88]
          Length = 585

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 188/442 (42%), Gaps = 36/442 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  ++ E +    Y   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 127 IKNFDDAGLHPIMRENIRLCRYEFPTPIQAYSIPAVLTGHDLISIAQTGSGKTAAFLIPV 186

Query: 59  ASTLLAENDRF----------------SPASAPLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  +                 S  + PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 187 LSQLMGKAKKLAAPRPNIAAGYNSSADSVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 246

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEML 161
           +   V  GG  V  +R +LQ G  I++ TPGRL D +    + ++  +K  ++DEADE+L
Sbjct: 247 LRPCVVYGGAPVRDQREELQRGCDILIATPGRLLDFMDKPHILSLRRVKYTIIDEADELL 306

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  D   I+     +     R M+  +               +D VRV I      H
Sbjct: 307 QSDWESDFAKIMSGGDINEDADHRYMMFSATFNKDCRKLARNYLAEDHVRVRIGRPGSTH 366

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           +++D   +      +   + ++L        ++F +++         L        ++  
Sbjct: 367 ANVDQNIIYAEPPLKKQCLYDLLLAMPPSRTLIFVNSKTQADFLDDYLYNMGLPSTSIHS 426

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +AL+  R  +  + +AT V+ARG+D+ ++  V++ +L           +HR 
Sbjct: 427 DRTQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNFDLPRVQHGGITEYVHRI 486

Query: 333 GRTGRAGRKGMSVFVIPQ-NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           GRT R G +G++       N    A  L     V ++ E   +V    E  + R   D +
Sbjct: 487 GRTARIGNEGLATSFYNHDNDADLAPDL-----VKLLIENKQTVPDFLE--SYRPSDDVV 539

Query: 392 FLDSIQGDEKKMVDVLLAKHDP 413
             D    DEK   +      D 
Sbjct: 540 KFDDDTDDEKSGEENNNGDTDA 561


>gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
           DSM 17836]
 gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
          Length = 554

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 193/400 (48%), Gaps = 18/400 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  +  AL+  G      +Q A L   L  KDVL   +TGSGKT AF L L +
Sbjct: 66  TFADLGLPAELVTALAAAGVHKPFPIQAATLPDSLAGKDVLGRGRTGSGKTYAFVLPLIA 125

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R  P + P AL +APTRELA Q+   +  L    G+      GGV    +   
Sbjct: 126 RLATSGTRRRP-NQPRALILAPTRELATQIQASISPLTDAFGLRTMTVFGGVGHGPQITG 184

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL DH++     +  ++  VLDEAD M DLGF   +  +L+++P   
Sbjct: 185 LRKGVDIVVACPGRLEDHVKAGHAKLDAVEITVLDEADHMADLGFLPAVRRLLEATPATG 244

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L K + +  V  ++ S     + + +  + V    R   +V+   
Sbjct: 245 QRLLFSATLDAGVDVLVKRFMRSPVTHSVDSAQSPVAKMTHHVLHVQPDSRLPVLVD--L 302

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  +VF  T+      TK L       V L G LSQ  R+  L+   DG A+  +A
Sbjct: 303 AAAPGRTLVFTRTKYGAKSLTKKLIAQGVPAVELHGNLSQGARTRNLEAFSDGSAKTLVA 362

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGI + D+ LVIHA+     +  LHRSGRT RAG +G  V ++  +  R    L 
Sbjct: 363 TDIAARGIHVDDVSLVIHADPPIEHKAYLHRSGRTARAGAEGTVVTLMTDDQVRDVRDLT 422

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
           R+A +      AP+V  +R       + DPL  +   G+ 
Sbjct: 423 RKAGI------APTVTKLR-------IGDPLLTELAPGER 449


>gi|295668368|ref|XP_002794733.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
 gi|226286149|gb|EEH41715.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28
           [Paracoccidioides brasiliensis Pb01]
          Length = 803

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 367 SGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGE 426

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 427 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYS 486

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 487 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVAN 546

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +P   +     +    +  + +                             
Sbjct: 547 EKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEA 606

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   V+  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 607 VDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 666

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 667 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 726

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 727 RTGRAGKSGVAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 777


>gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 430

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/394 (26%), Positives = 179/394 (45%), Gaps = 7/394 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q   +   +  KD+L S++TGSGKT+AF L     +     +      P  L 
Sbjct: 3   FDQATEIQRTAIPVAILGKDILASSKTGSGKTLAFLLPAMQRMY--RSKPFTRRDPRVLI 60

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA QV  +L+ L A T    A+ +GG + + + + L+     VV TPGRL DH+
Sbjct: 61  LTPTRELAKQVFAQLKPLNAGTPYDAALIVGGENFNDQVKALRKDPMFVVATPGRLADHL 120

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRMLMFSATISPAITTL 196
             +   +  L+ ++LDEAD MLDLGF  ++  I +      ++  M   +      +   
Sbjct: 121 EHRSTYLDGLEMLILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLDHPEVVEMA 180

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
            +            S            +   L+ ++  +  IL        I+F +TRA 
Sbjct: 181 HEMLNAPKRISIGHSAEEHKDITQRFILCDNLTHKEALLNKILETEDYNQMIIFTATRAD 240

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
             R TK L +   + VALSG L+Q +R++ +        ++ + TD+A+RG+D+ ++  V
Sbjct: 241 TDRLTKELNDRKLKAVALSGNLNQTQRNSIMSQFERFCHKILVTTDIASRGLDISNVSHV 300

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +L  + E  +HR GRTGRAG KG ++  +     +  + +      S+ +     ++
Sbjct: 301 INFDLPKHAEEYVHRVGRTGRAGNKGDAISFVGPKDWKSFKNIEAFLQQSIEFTAIDGLK 360

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           A  +    +I Q   F         +      AK
Sbjct: 361 A--KFKGFKIEQKKKFNKKPTEQNNQKKKTQAAK 392


>gi|39951881|ref|XP_363657.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
 gi|152032663|sp|A4RK80|PRP28_MAGO7 RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|145020572|gb|EDK04701.1| hypothetical protein MGG_01583 [Magnaporthe oryzae 70-15]
          Length = 674

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 120/409 (29%), Positives = 188/409 (45%), Gaps = 32/409 (7%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E  N+P V+ + + + GY   T VQ A +   L+ +D++  ++TGSGKT AF L +
Sbjct: 256 MRFWEESNLPHVLKDTIKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPM 315

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVH 115
            S +  L   +  +    P AL +APTRELA Q+  E+     + G   V +     ++ 
Sbjct: 316 LSYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNKRTIE 375

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------ 169
            +   L+NGA I+V TPGRL D +    L +S    VVLDEAD M+D GF D I      
Sbjct: 376 EDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIHKILAA 435

Query: 170 --------------------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
                               +F+  +   ++ ++  +              +  A+    
Sbjct: 436 LPPSNGKPDDRDAEDPNIMSKFLTPNLRYRQTVMYSATMPPSVERIAKNYLKHPAMVTIG 495

Query: 210 ASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL 268
                  +       +V     R+     +  Y   K  IVF +T+++     K L    
Sbjct: 496 TIGEAVDTVEQQAMWVVSEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSS 555

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
           F  V L G  +Q +R  ALQ  RDGR  V +ATDVAARG+D+PD+ LVI+  ++   E  
Sbjct: 556 FSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVY 615

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
            HR GRTGRAG++GM++             L +  + S + +  P ++ 
Sbjct: 616 THRIGRTGRAGKEGMAITFCGPEDHGVLYHLKQIMSKSQMSKVPPWLKD 664


>gi|313500928|gb|ADR62294.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida BIRD-1]
          Length = 461

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 202/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ ++  +V + S +  +   + R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQI-EQRFIEIDPQQRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
                 + W+   S++
Sbjct: 361 ALQKSPLRWDQLDSLK 376



 Score = 60.8 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 24/75 (32%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G        +   ++ G K K     ++  L   +GI  + +G I +     FV V 
Sbjct: 376 KNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVE 435

Query: 515 ADGVDLLRRTVKLDK 529
                   + +   K
Sbjct: 436 RALAKQAMQRLNSGK 450


>gi|167035990|ref|YP_001671221.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida GB-1]
 gi|166862478|gb|ABZ00886.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
          Length = 461

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 202/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSTAMLANLDALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPARR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ ++  +V + S +  +   + R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQI-EQRFIEIDPQHRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
                 + W+   S++
Sbjct: 361 DLQKSPLRWDSLDSLK 376



 Score = 60.8 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 28/88 (31%)

Query: 442 GRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGA 501
            +   R DS       G        +   ++ G K K     ++  L   +GI  + +G 
Sbjct: 363 QKSPLRWDSLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGK 422

Query: 502 IRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           I +     FV V         + +   K
Sbjct: 423 IAIFDFQAFVAVERALAKQAMQRLNSGK 450


>gi|148550027|ref|YP_001270129.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida F1]
 gi|148514085|gb|ABQ80945.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
          Length = 494

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 202/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   L+ +D++  A+TGSGKT AFG+ L + 
Sbjct: 41  FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 101 INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 154

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 155 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 214

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ ++  +V + S +  +   + R + +    R  A+  +L 
Sbjct: 215 QTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQI-EQRFIEIDPQQRLEAVTRVLG 273

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 274 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 333

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 334 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIE 393

Query: 361 REANVSVVWEPAPSVE 376
                 + W+   S++
Sbjct: 394 ALQKSPLRWDQLDSLK 409



 Score = 60.8 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 24/75 (32%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G        +   ++ G K K     ++  L   +GI  + +G I +     FV V 
Sbjct: 409 KNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVE 468

Query: 515 ADGVDLLRRTVKLDK 529
                   + +   K
Sbjct: 469 RALAKQAMQRLNSGK 483


>gi|239978905|ref|ZP_04701429.1| putative DEAD-box RNA helicase [Streptomyces albus J1074]
 gi|291450788|ref|ZP_06590178.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291353737|gb|EFE80639.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 538

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 192/376 (51%), Gaps = 4/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P+ +  AL+  G      +Q A L   L  +D+L   +TGSGKT+AFGLAL +     
Sbjct: 84  ELPEPLLTALAAEGMAEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR---T 140

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R + A APLAL + PTRELA QV   L       G+ +A  +GG+S++++   L+ G 
Sbjct: 141 AGRRAEAGAPLALVLVPTRELAQQVTDALTPYAKALGLRMATVVGGLSLNKQASALRRGT 200

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D +      +  +   VLDEAD+M D+GF   +  +LD +    + ++F
Sbjct: 201 EVVVATPGRLKDLLDRGDCRLDQVAVSVLDEADQMTDMGFMPQVTALLDRTAPDGQRMLF 260

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   I  L + Y  D V  ++       + +++   L    D D   V +       
Sbjct: 261 SATLDRNIDRLVRGYLSDPVVHSVDPSAGAVTTMEHHV-LYVADDTDKKAVALRIAARDG 319

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ S  RF K L  +  +  AL G  SQ +R+  L+  ++G+    +AT+VAA
Sbjct: 320 RVIMFVDTKRSADRFAKRLLANGVRASALHGGRSQPQRNRTLEQFKNGQVTALVATNVAA 379

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL   A +
Sbjct: 380 RGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMSAARI 439

Query: 366 SVVWEPAPSVEAIRER 381
           +       S +    R
Sbjct: 440 TPQTARVKSSDEELAR 455


>gi|162139465|ref|YP_001171714.2| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri A1501]
          Length = 476

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL   
Sbjct: 95  LAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLLETP 154

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+  +   L   TG  V++   G     + ++     
Sbjct: 155 PPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQLESRY 214

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 215 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 274

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 275 LLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLITQN 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 335 DWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +   
Sbjct: 395 VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEAL 454

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 455 IGRKIQCEMPPA 466


>gi|254482880|ref|ZP_05096117.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036961|gb|EEB77631.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 465

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 112/372 (30%), Positives = 187/372 (50%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS-TLLAE 65
           +   +   +++ G+   + +Q  +L   L+  D +  AQTG+GKT AF + + +  L   
Sbjct: 90  LRDELMHGVADLGFQYSSPIQAQVLPHTLQGHDAIGKAQTGTGKTAAFLITIFNDQLCHP 149

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNG 124
            +       P AL IAPTREL +Q+  +   L   TG+ VA +  G     +  R  ++ 
Sbjct: 150 IEGERFVGEPRALVIAPTRELVMQIAADAADLGKHTGLQVATLIGGMDYQKQLNRLQRDV 209

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VV TPGRL D +  + L + H++ +VLDEAD MLD+GF   ++ I+ + P+K     
Sbjct: 210 IDLVVATPGRLLDFMGRRDLFLDHVEVLVLDEADRMLDMGFIPQVKRIVRACPRKESRQT 269

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  I  L++ +  + V V I  ++     +D +  +V+   R   + N++R  
Sbjct: 270 LLFSATFTQDIINLSQQWTYEPVTVEIEPDSVATDTVDQKIYMVSSEQRFRVLNNLVRSD 329

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + IVF + R  V R  + L +   +   LSGE+ Q +R+  L+  ++G   V +ATD
Sbjct: 330 DCSSVIVFANRRDQVRRLHERLRKAGVKCGVLSGEIPQAKRTRTLEQFKNGEITVLVATD 389

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  V++  L  +PE+ +HR GRTGRAG  G S+    ++       L   
Sbjct: 390 VAGRGIHVDGISHVVNYNLPEDPEDYVHRIGRTGRAGATGTSISFASEDDAFLLPDLEAL 449

Query: 363 ANVSVVWEPAPS 374
               +     P+
Sbjct: 450 LGAPLECTHPPA 461


>gi|183599789|ref|ZP_02961282.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
 gi|188022053|gb|EDU60093.1| hypothetical protein PROSTU_03297 [Providencia stuartii ATCC 25827]
          Length = 447

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/387 (28%), Positives = 193/387 (49%), Gaps = 4/387 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + +  AL+++GY   T++Q A +   +  +DVL SA TG+GKT AF L     LL  
Sbjct: 10  ELDESLINALADKGYERPTAIQAAAIPAAMDGRDVLGSAPTGTGKTAAFLLPAIQHLLDF 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    P  L + PTRELA+QV  + + L A   + +A   GGV+            
Sbjct: 70  PRKKS--GPPRVLILTPTRELAMQVADQAKELCAHNHLDIATITGGVAYMNHAEVFSENQ 127

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV T GRL  +I+ +  +   ++ ++LDEAD MLD+GF +DIE I   +  +++ ++F
Sbjct: 128 DIVVATTGRLLQYIKEENFDCRAVEILILDEADRMLDMGFANDIETIAGETRWRKQTMLF 187

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV--ALSDRDNAIVNILRYHG 243
           SAT+             +      A  +R+      +       L  +   + ++L+   
Sbjct: 188 SATLEGEAIRDFSERLLEDPVEIDAESSRRERKKIQQFYYRADNLQHKTALLCHLLKQED 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              +IVF   R  V    + L +   +   L GE++Q +R+ A++ +  G+ +V +ATDV
Sbjct: 248 VTKSIVFVRKRERVREVVQWLRDAGIESCYLEGEMAQAKRNEAVRRLVTGQVKVLVATDV 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  V + ++S   +  LHR GRTGRAGRKG ++ +I  +      ++ R  
Sbjct: 308 ASRGLDIDNVSHVFNFDMSRTADVYLHRIGRTGRAGRKGTAISLIEAHDYPLFGKVSRYI 367

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDP 390
             S+      S+    +  ++ ++  P
Sbjct: 368 EDSIKMRVIDSLRPSTKAPSESMMNKP 394


>gi|312140644|ref|YP_004007980.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|325675727|ref|ZP_08155411.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
 gi|311889983|emb|CBH49301.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
 gi|325553698|gb|EGD23376.1| ATP-dependent RNA helicase DeaD [Rhodococcus equi ATCC 33707]
          Length = 545

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/359 (34%), Positives = 178/359 (49%), Gaps = 8/359 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +AL+E G     ++QE  L   L   D++  A+TG GKT  FG+ L   +   +  
Sbjct: 50  DEIVKALAEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGIPLLHRVSTADSG 109

Query: 69  FSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGV-----VVAVCIGGVSVHRERRDLQ 122
            +P    P AL I PTREL VQV ++LE              V    GG    ++   L+
Sbjct: 110 TTPLDGTPRALVIVPTRELCVQVTQDLENASKYLKSGEKKLEVLSIYGGRPYEQQIDALR 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  +VVGTPGRL D      L +  +  +VLDEADEMLDLGF  DIE IL   P KR+ 
Sbjct: 170 KGVDVVVGTPGRLLDLANQGHLILGKVGVLVLDEADEMLDLGFLPDIERILGMVPDKRQT 229

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R   A  +  H             D+   +  +L+
Sbjct: 230 MLFSATMPGPIITLARTFLTQPTHIRAEEADSSAVHERTTQHIYRAHALDKAEMVARVLQ 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    ++F  T+ +  +    L E  F V A+ G+L Q  R  AL   R G+  V +A
Sbjct: 290 ADGRGATMIFTRTKRTAQKVADDLNERGFNVGAVHGDLGQIAREKALAGFRSGKVDVLVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ ++  +   R + +
Sbjct: 350 TDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAITLVDWDDVPRWQLI 408


>gi|289671093|ref|ZP_06492168.1| ATP-dependent RNA helicase RhlB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 446

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/373 (29%), Positives = 187/373 (50%), Gaps = 4/373 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF + + + LL  
Sbjct: 15  DLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVTVVNRLLNR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ ++     A  G+  A+  GGV   ++R  LQ G
Sbjct: 75  PALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P++    
Sbjct: 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  +  +  ++ + +E    + +  R    +  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+A V R  + L  H ++V  LSG++ Q++R + L   + G+  + +AT
Sbjct: 255 SEGARTMVFVNTKAFVERVARALERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +        +  
Sbjct: 315 DVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAISLPDIEA 374

Query: 362 EANVSVVWEPAPS 374
                +  EP  S
Sbjct: 375 YIEQKIPVEPVTS 387


>gi|294954356|ref|XP_002788127.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239903342|gb|EER19923.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 485

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 9/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA+   L  + 
Sbjct: 57  LKPELLRAIVDCGFEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQLNIDE 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
                      L +  TRELA Q+  E +        V    V  G      +    ++ 
Sbjct: 117 KDTD----VKVLIMCHTRELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKSH 172

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
             I++GTPGR+   +RGK L++SH++  VLDE D+ LD    R DI+ +   +P K++++
Sbjct: 173 PQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKLDMRKDIQSVFMETPVKKQVM 232

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYH 242
           MFSAT+S  +  + K +  +   + +  + +       +  +    + ++  + ++L   
Sbjct: 233 MFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQYFVRLAENEKNKKLTDLLDAL 292

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +         +L E  F  +A+   L Q ER +  +  +D + R+ +ATD
Sbjct: 293 EFNQVVIFVKSVQRAMALADLLTECNFPAIAIHSRLKQSERIDRYKQFKDFKKRIMVATD 352

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +  +       ++  
Sbjct: 353 LFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKGLAITFVSSEEDTDMLNQVQA 412

Query: 362 EANVSVVWEPA 372
              V++   PA
Sbjct: 413 RFEVTIGELPA 423


>gi|320036459|gb|EFW18398.1| DEAD/DEAH box RNA helicase [Coccidioides posadasii str. Silveira]
          Length = 595

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 28/375 (7%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++  +  V+ E +   GY   T VQ   +   +   D++  AQTGSGKT AF + + S 
Sbjct: 133 FDDAGLHPVLLENVKLCGYEVPTPVQAYSIPAVMNGYDLIAVAQTGSGKTAAFLIPVLSK 192

Query: 62  LLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVV 105
           L+ +  + + A                  PL L +APTRELA Q+  E   L  ++ +  
Sbjct: 193 LMGKAKKLAAARPDLTNGFNESVDSVRAEPLVLIVAPTRELATQIFDEARRLCYRSMLRP 252

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLG 164
            V  GG     +R DL  G  I++GTPGR+ D +     L++  +K  ++DEADEML   
Sbjct: 253 CVIYGGAPAREQRIDLHKGCDILIGTPGRILDFMGRNSLLSLHRVKYTIIDEADEMLHSN 312

Query: 165 FRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
           +  +   I+     +       M+  +           +    D VR+ I      H ++
Sbjct: 313 WEREFTQIMSGGDVNEDADHCYMMFSATFNKECRQVARRFLSIDHVRIRIGRAGSSHLNV 372

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
             + +      +  A+ +++        +VF + +         L  +     ++  + +
Sbjct: 373 TQQVIYTEDDKKKKALYDLILSIPPSRTLVFVNNKQQADLLDDFLFNNGLPSTSIHSDRT 432

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRT 335
           Q+ER +A++  R G   + +AT ++ARG+D+  +  VI+ +L S      +  +HR GRT
Sbjct: 433 QREREDAIRAFRTGVCPIMVATGISARGLDIRHVMHVINFDLPSVEHGGIDEYIHRIGRT 492

Query: 336 GRAGRKGMSVFVIPQ 350
            R G +G++      
Sbjct: 493 ARIGNEGLATSFYND 507


>gi|255307113|ref|ZP_05351284.1| putative ATP-dependent RNA helicase [Clostridium difficile ATCC
           43255]
          Length = 381

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +    ++ + L ++   + T VQ  ++   ++ KD+L+++QTG+GKT+A+ L +
Sbjct: 1   MNTFEQLKISSILIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVH 115
              +       +      AL +APT EL +Q+  ++E L      +   +A+        
Sbjct: 61  FEKID------TSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEVNIQK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +       HIV+G+ GR+ D I+ K L   ++K +VLDE D +L+      IE I+ +
Sbjct: 115 QIKNIKAVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+++  SA+++ +   +     K+   +    +++ + +I++  +L  + D+   +
Sbjct: 175 TLRDRQIIGCSASLTDSTIKICDKLMKEFEIIKTKEKSQINPNINHSYLLGEIRDKFTFL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L     K AIVF +   ++      L  H ++ + + G + +++R NA+   + G+A
Sbjct: 235 RKALAATNPKKAIVFVNNEKNIEVLVSKLNYHNYKAIGIFGNMEKEDRKNAINKFKLGKA 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ I TD++ARG+D+ D+  V + +        LHR GRT R  R G ++ +I +     
Sbjct: 295 KILITTDLSARGLDIVDVSHVFNLDFPKIKNEYLHRCGRTARGNRSGNTISIITKKELDI 354

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + L +E N+ +  +   + E I
Sbjct: 355 IKDLQKEFNIVITPKTLQNGELI 377


>gi|320011360|gb|ADW06210.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 571

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 193/383 (50%), Gaps = 6/383 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL
Sbjct: 61  VESFDALDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL 120

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R S   APLAL + PTRELA QV   L        + VA  +GG+S+ R+ 
Sbjct: 121 LAR---TAGRRSEPHAPLALVLVPTRELAQQVTDALTPYATAVNLRVATVVGGMSISRQS 177

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L     
Sbjct: 178 GALRRGAEVLVATPGRLKDLIERGDCRLDAVSITVLDEADQMADMGFMPQVVALLKQVEP 237

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   I  L K +  D V  ++       + +++   L    + D   V  
Sbjct: 238 DGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHV-LHVADETDKKAVAT 296

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+    RF K L     +  AL G  SQ +R+  L   ++G+    
Sbjct: 297 RIAARDGRVIMFVDTKRGADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTAL 356

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 357 VATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKRDMTR 416

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L ++A ++ +     S +    R
Sbjct: 417 LMQDAGIAPLTTRIKSSDEELSR 439


>gi|253742309|gb|EES99150.1| DEAD box RNA helicase Vasa [Giardia intestinalis ATCC 50581]
          Length = 658

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/392 (26%), Positives = 170/392 (43%), Gaps = 30/392 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
            P  +   + +  Y   T +QE  +   L   D+L ++QTGSGKT +F   + + L+   
Sbjct: 185 FPPGLIRNIEKLHYKQPTPIQENAIPLILSSMDILATSQTGSGKTFSFLSPIVTKLINSH 244

Query: 66  -------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                   DR S  S PLA+ ++PTREL  Q+      L  KT ++V +  GG     ++
Sbjct: 245 AKDTILSEDRESSTSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGAREQK 304

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G  IV+ TPGRL D +    L++ +++ +VLDEAD+MLD+GF   I  ++     
Sbjct: 305 GLLRKGCDIVIATPGRLKDFLERGCLSLKYVQIMVLDEADKMLDMGFEPQIRDLVYKFDM 364

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                  S        T     Q  A R            I      +       A   +
Sbjct: 365 PGNGSNGSRQTLMFSATFGGGVQNMAKRYLHNEARIHIGQIGTTTTTIKQQFEYIAETAM 424

Query: 239 LRYHG------------------AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                                  +   ++F  T+  V      L     +V  + G+L Q
Sbjct: 425 KSVDKRIEKLIHXLKSPGSIPTASFLTLIFVETKKDVVYIVTKLLNAGLRVCEMHGDLEQ 484

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           +ER N L+  +DG+  V +ATDVA RGID+  +  V++ +   + +  +HR GRTGRAG 
Sbjct: 485 RERQNNLKNFKDGKTPVLVATDVAQRGIDIGAIRHVVNFDFPKDIDAYIHRIGRTGRAGA 544

Query: 341 KGMSVFVI----PQNMQRRAERLFREANVSVV 368
           +G++   I    P ++ R  + +  ++   V 
Sbjct: 545 EGLATSFILLDTPHHILRELKNILTQSKQPVP 576


>gi|260791488|ref|XP_002590761.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
 gi|229275957|gb|EEN46772.1| hypothetical protein BRAFLDRAFT_218590 [Branchiostoma floridae]
          Length = 372

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 101/359 (28%), Positives = 181/359 (50%), Gaps = 6/359 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E + +   + +++  +  +T +Q   + P L  +D+L +A+TGSGKT+AF +      L 
Sbjct: 15  ETVCEPTLKGVADMSFTCMTEIQAKSIPPLLEGRDILAAAKTGSGKTLAFLIPAVE--LM 72

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +F P +    + ++PTRELA+Q    L+ L         + +GG S   E   L  G
Sbjct: 73  YKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELLKYHCHTYGLIMGGTSRSSEADKLAKG 132

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            +IVV TPGRL DH++        +L+ +V+DEAD +L++GF ++++ I+   PK+R+ +
Sbjct: 133 INIVVATPGRLLDHMQNTPQFMFKNLQCLVIDEADRILEVGFEEELKQIVRLLPKRRQTM 192

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILR 240
           +FSAT +  I  LA+   K         +N+  + ++      V+     R   +   L+
Sbjct: 193 LFSATQTRKIEDLARVSLKREPLYVGVDDNKDQATVEGLEQGYVVCPSEKRFLLLFTFLK 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  +VF S+  SV    ++L      V+A+ G   Q +R+       +      + 
Sbjct: 253 KNRKKKIMVFFSSCMSVKYHYELLNYIDLPVMAIHGRQKQTKRTTTFFQFCNSDTGTLLC 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P+  +HR GRT RAG +G ++ ++          L
Sbjct: 313 TDVAARGLDIPAVDWIVQFDPPDDPKEYIHRVGRTARAGGRGHALLILRPEELGFLRYL 371


>gi|47222980|emb|CAF99136.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 509

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/383 (27%), Positives = 181/383 (47%), Gaps = 47/383 (12%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    +P  I + L ++G V+ T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 99  IKSFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFTLPI 158

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYA------KTGVVVAVCIG 110
               L +  R  F     P  L I P+RELA Q    +E+            +  A+CIG
Sbjct: 159 IMFCLEQEKRLPFCKREGPYGLIICPSRELARQTHGIIEYYCKLLEEEGAPQLRTALCIG 218

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF +DI 
Sbjct: 219 GMSVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIR 278

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            I      +R+ L++SAT+   I   AK+     + +N+        D+      V    
Sbjct: 279 TIFSYFKGQRQTLLYSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEA 338

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   ++  L+                                       Q+ER+ A++  
Sbjct: 339 KMVYLLECLQKTPPPY---------------------------------QEERTKAIEAF 365

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           ++G+  V +ATDVA++G+D P ++ V++ ++    EN +HR GRTGR+G+ G++   I  
Sbjct: 366 KEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINK 425

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 426 GCDESVLMDLKALLVEAKQKVPP 448


>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
 gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
           LFI1238]
          Length = 442

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/410 (26%), Positives = 192/410 (46%), Gaps = 12/410 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L +   L  +    
Sbjct: 31  PLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPILQQLHEDKPFS 90

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            +    +    L + PTRELA QV   ++         +      GGVS + +   L+ G
Sbjct: 91  TKSGKGNYVTGLILVPTRELAKQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGG 150

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +LD  PK+++ L+
Sbjct: 151 TDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDLLPKQKQTLL 210

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL +    D + + + S +        R   V   ++   + ++++ +  
Sbjct: 211 FSATFPEQVQTLTQELLNDPIEIQVQSADASTL--VQRVFTVNKGEKTALLAHLIKQNEW 268

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L++         G+  Q  R+  L+  + G   V IAT++A
Sbjct: 269 RQALIFVNAKNSCEHLADKLSKRGITAEVFHGDKGQGARTRILEAFKLGEIEVLIATNIA 328

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I        + + ++  
Sbjct: 329 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFKIIEKKNK 388

Query: 365 VSVVWEPAPSV---EAIRE--RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           + +  E        EA+ +   D ++ +  P      +   +   D  + 
Sbjct: 389 IRLEREEVEGFEVDEAVSDSLSDVEKPMAKPEGTGKKKRKNRASADEDVW 438


>gi|327479736|gb|AEA83046.1| ATP-dependent RNA helicase RhlB [Pseudomonas stutzeri DSM 4166]
          Length = 476

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 182/372 (48%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF ++  + LL   
Sbjct: 95  LAPELMHAIHDLGFPYCTPIQAQVLGYTLKGRDAIGRAQTGTGKTAAFLISTITQLLETP 154

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+  +   L   TG  V++   G     + ++     
Sbjct: 155 PPKERYMGEPRALIIAPTRELVVQIANDALDLTKYTGLNVMSFVGGMDFDKQLKQLESRY 214

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 215 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 274

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LA+ +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 275 LLFSATFTDDVMNLAQQWTTNPAVVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLITQN 334

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +  V R  + L +       +SG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 335 DWTRVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKRIRTLEGFREGKIRVLVATD 394

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +   
Sbjct: 395 VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEAL 454

Query: 363 ANVSVVWEPAPS 374
               +  E  P+
Sbjct: 455 IGRKIQCEMPPA 466


>gi|221128053|ref|XP_002155499.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260222669|emb|CBA32460.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 415

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 128/383 (33%), Positives = 199/383 (51%), Gaps = 10/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ ++ +   T VQ   + P +  +DVLV AQTGSGKT AF LA+        
Sbjct: 8   LTPALAAAMVQQQFSTPTPVQTGAIPPAVAGRDVLVCAQTGSGKTAAFALAVLQR--WTP 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELE--WLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              S A  P AL + PTRELAVQVG  L      A     ++V  GGVS++ +   L+ G
Sbjct: 66  PAASGARRPQALVLVPTRELAVQVGGVLSTLARAAGLPAKISVVFGGVSINPQLMALRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IVV T GRL D +    L + H++ +VLDEAD MLDLGF ++++ I    PK+ + L+
Sbjct: 126 TDIVVATTGRLLDLVDHNALQLQHIRCLVLDEADRMLDLGFAEELDRIDALLPKQHQSLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT S  +  LA++  ++ + + I  E +   DI  RA+ V  S R   + +++     
Sbjct: 186 FSATYSAGVRQLAESRLREPLEITIKQEEQAAPDITQRAITVDASRRTQLLRHLVVQEAW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+ +       L     Q      +LSQ +R+  L   +    +V +ATDVA
Sbjct: 246 PRVLVFVATKYAAEMVADKLRRAGLQAEPFHAQLSQGKRTQVLADFKASVVQVVVATDVA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +V++ +L  +  + +HR GRT RAG+ GM+V  +  +       + +   
Sbjct: 306 ARGVDIAGLPVVVNFDLPRSATDYVHRIGRTARAGQAGMAVSFVSADTAAHFALIEKRNG 365

Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387
           V V        EAIR  + +++L
Sbjct: 366 VQVPR------EAIRGFEPEQVL 382


>gi|70945861|ref|XP_742705.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521835|emb|CAH78029.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 483

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 98/370 (26%), Positives = 193/370 (52%), Gaps = 10/370 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   NI + + +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +
Sbjct: 96  ITSFSQLNICEEVLQSIKELGWEKPTLIQQKVLPLVFQKRDIIGLSETGSGKTACFIIPI 155

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   F       AL I+PTREL +Q+ +  + L +   + +    GGV +  + 
Sbjct: 156 LQELKYKKQSF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQS 209

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L    +I++ TPGR+ DH+      N+ +LK +V DEAD++L L F   I  +L   P
Sbjct: 210 LNLAKKPNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILP 269

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R   +FSAT++ ++  L K   K+ +++ ++++      +    + + L  +   + +
Sbjct: 270 NNRITFLFSATMTKSVAKLKKASLKNPIKIEVSNKYSTVKTLIETYIFLPLKYKYTYLCS 329

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y   KN I+F +T A+  +          + + L G+L+Q +R ++L + +  +  +
Sbjct: 330 LCFYFTNKNIIIFTNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNI 389

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+T V ARG+DL ++++VI+ +L  + +  +HR GRT RAG+ G S+  + Q       
Sbjct: 390 LISTQVGARGLDLQNIKIVINFDL-CSCKEYIHRVGRTARAGKTGKSITFVTQYDVEAFL 448

Query: 358 RLFREANVSV 367
            + ++ N  +
Sbjct: 449 TIEKQLNKKI 458


>gi|209515859|ref|ZP_03264721.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
 gi|209503707|gb|EEA03701.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
          Length = 467

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 134/400 (33%), Positives = 204/400 (51%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P      L++ GY+ +T +Q A L   L  +D++  A+TGSGKT AF LAL + L    
Sbjct: 16  LPPATLANLTQLGYIEMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFSLALLARLD--- 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELA QV +E+  L   +  + V    GG  +  +   L++GA
Sbjct: 73  ---ARKFDTQAMVLCPTRELADQVTQEIRRLARAEENIKVLTLCGGTPMRPQTASLEHGA 129

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+F
Sbjct: 130 HVVVGTPGRIMDHLERGTLVLQALNTLVLDEADRMLDMGFFDDIAKVARQCPKERQTLLF 189

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++ +     +    +E    S I  R   V+  +R +A+  +L ++   
Sbjct: 190 SATYPEGIAKLSQQF-LRNPKEVKLAERHDDSKIRQRFYEVSEDERLHAVGLLLNHYRPV 248

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + I FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 249 STIAFCNTKQQCRDLLDVLRAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAA 308

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE   HR GRTGRA ++G ++ +   +   R   + +    
Sbjct: 309 RGLDIAQLEAVINVDVTPDPEVHTHRIGRTGRADQEGWALSLASMDEMGRVGGIEQAHKR 368

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
            V W     ++A         L  P+    I G  K  + 
Sbjct: 369 DVEWHKLAELKAAS----NDPLLPPMETLQILGGRKDKIR 404



 Score = 54.2 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G     IG I V    T+V     ++ + V 
Sbjct: 388 PPMETLQILGGRKDKIRPGDVLGALTGDAGFAGSQIGKINVTDMSTYVAVERSIAREAVR 447

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       + ++++ +   
Sbjct: 448 RLSAGKLKGRKVKVRLMDDA 467


>gi|188035877|ref|NP_001026895.2| probable ATP-dependent RNA helicase DDX59 [Homo sapiens]
 gi|74762230|sp|Q5T1V6|DDX59_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59; AltName: Full=Zinc finger HIT
           domain-containing protein 5
 gi|55959939|emb|CAI17056.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sapiens]
          Length = 619

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 192/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|16079569|ref|NP_390393.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310438|ref|ZP_03592285.1| hypothetical protein Bsubs1_13756 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314761|ref|ZP_03596566.1| hypothetical protein BsubsN3_13672 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319684|ref|ZP_03600978.1| hypothetical protein BsubsJ_13593 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323961|ref|ZP_03605255.1| hypothetical protein BsubsS_13727 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731006|sp|P54475|CSHB_BACSU RecName: Full=DEAD-box ATP-dependent RNA helicase CshB
 gi|1303839|dbj|BAA12495.1| YqfR [Bacillus subtilis]
 gi|2634947|emb|CAB14444.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 438

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 190/383 (49%), Gaps = 14/383 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE   +   I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L
Sbjct: 1   MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVS 113
            L + +    D          +  APTRELA Q+ +E   +      + +     IGG  
Sbjct: 61  PLLNKIDPAKD------VVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTD 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I 
Sbjct: 115 KQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIG 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D 
Sbjct: 175 SRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDK 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D 
Sbjct: 235 LLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDL 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +     +
Sbjct: 295 EFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
               RL +   +   +      E
Sbjct: 355 DALVRLEK-MGIEFEYLELEKGE 376


>gi|291001111|ref|XP_002683122.1| predicted protein [Naegleria gruberi]
 gi|284096751|gb|EFC50378.1| predicted protein [Naegleria gruberi]
          Length = 441

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 179/394 (45%), Gaps = 18/394 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ + G+ + + VQ   +   +   DVL  A++G GKT  F +++   L    
Sbjct: 53  LKPEILKAIVDCGFEHPSEVQHECIPQAMIGSDVLCQAKSGMGKTAVFVISVLQQLETIE 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA--VCIGGVSVHRERRDLQNG 124
            +       + + +   RELA Q+ +E          V       G        +     
Sbjct: 113 PK------TMCVILCHARELAYQICQEFNRFSKYLPDVRVKSFIGGINIKTHIEQLKSET 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRML 183
            H+VVGTPGR+    +   L + ++K  ++DE D++L+    R D++ I   +PK ++++
Sbjct: 167 PHVVVGTPGRVLQLAKDGHLKLGNVKYFIVDECDKVLESEEMRSDMQEIFKKTPKTKQVM 226

Query: 184 MFSATISPAITTLAKNYQKD---AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           MFSAT+S  +   AK +            +        +    +L+   +++  +++ L 
Sbjct: 227 MFSATLSTEMRLTAKKFMNPSSLMEVKVDSDSKLTLHGLQQYFILLKEEEKNGKLLSWLD 286

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+    +   +L ++ F  + +  ++SQ ER    Q  ++   R+ I+
Sbjct: 287 ALEFNQVVIFVRTKNRAEKLKDILEKNGFPCLTMHSDMSQDERLKQYQSFKNFEKRIMIS 346

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +V + ++   P++ LHR GR GR G KG+++  I  +M  +     
Sbjct: 347 TDLLGRGIDIQRVNIVFNYDMPDEPDSYLHRVGRAGRFGTKGLAISFISSDMPSKIGSYE 406

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           R  N   V      +E I++R   +I + P  +D
Sbjct: 407 RTINDQEV------LENIQKRFEVKIKEMPTQID 434


>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           pealeana ATCC 700345]
 gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
           700345]
          Length = 442

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 187/376 (49%), Gaps = 5/376 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ + E L    Y   T++Q  I+   L  KDVL  A+TGSGKT AF L +   L   +
Sbjct: 31  IPE-LLETLKLLSYTKPTAIQSHIIPAVLDGKDVLGGAKTGSGKTAAFALPIIQKLAKAS 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNG 124
            R +  +    L + PTRELA QV           K  +      GGVS + + + L+ G
Sbjct: 90  PRKAGGNFVSCLVLVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNVQMQSLRGG 149

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D I    L + +   +VLDEAD ML LGF +++  +L   PK ++ L+
Sbjct: 150 ADIVVATPGRLIDLISSNALKLDNTTTLVLDEADRMLSLGFTEELNELLAKLPKTKQTLL 209

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L  +   + V V + S          R + V  + +   +  +++ +  
Sbjct: 210 FSATFPEEVRELTDSLLNNPVEVQLQSSEESTL--VQRVITVNRNRKTALLAQLIKDNQW 267

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F S + S +R  + L            +  Q  R+  L+  + G   V IATD+A
Sbjct: 268 QQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEEFKSGEISVLIATDIA 327

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++  
Sbjct: 328 ARGIDIEKLPIVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIEKKNK 387

Query: 365 VSVVWEPAPSVEAIRE 380
           + +  E  P  EA  E
Sbjct: 388 LRLEREQIPGFEADLE 403


>gi|158291908|ref|XP_313440.4| AGAP003663-PA [Anopheles gambiae str. PEST]
 gi|157017513|gb|EAA44671.4| AGAP003663-PA [Anopheles gambiae str. PEST]
          Length = 746

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 143/378 (37%), Gaps = 9/378 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+ I  P  +   +  +GY + T +Q       L   +++  A+TGSGKT+A+ L  
Sbjct: 369 ITEFDEIEIPDYVKREIDRQGYKSPTPIQAQGWPIALSGLNMVGVAKTGSGKTLAYMLPA 428

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +    S    PL L +APTRELA Q+ +      + + +      GG S   + 
Sbjct: 429 IVHINHQKPDPS-VRGPLVLVLAPTRELAQQIQQVATEFGSSSYIRNTCLFGGSSKGPQA 487

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI---EFILDS 175
           R     +         LC    G                           I         
Sbjct: 488 RRSARSSITSGRIVRFLCGPPPGPRRCSVWRVTSSATTCRSTSVRWSCRRITTLRSTCAL 547

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++ +        + A            +     S       +    +    +     +
Sbjct: 548 LPRRTKTQSKCTQPAGANGPSRLELSPGTMFFLSGSNANVFLFVFSSPLFSLSTVLGKLL 607

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +         ++F +T+    R +  +  + +  V++ G+ SQQER  AL   R+  +
Sbjct: 608 EELYHEGNPGKILIFTTTKRQCDRISMQIKRYGYDSVSMHGDKSQQERERALGRFRNSSS 667

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  +++VI+ +     E+ +HR GRTGR+   G++        +++
Sbjct: 668 CILVATDVAARGLDVDGIKVVINYDYPQQTEDYVHRIGRTGRSNATGVAYTFFTMAERKQ 727

Query: 356 AER---LFREANVSVVWE 370
           A     + +EA   +  E
Sbjct: 728 ARELVNILQEAKQDIPSE 745


>gi|115384638|ref|XP_001208866.1| hypothetical protein ATEG_01501 [Aspergillus terreus NIH2624]
 gi|114196558|gb|EAU38258.1| hypothetical protein ATEG_01501 [Aspergillus terreus NIH2624]
          Length = 496

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 41/372 (11%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 109 VETFDEAGFPQYVLGEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 168

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 169 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 227

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 228 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 287

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  M+SAT                                    + ++    N  +  
Sbjct: 288 DRQTCMWSATWPK------------------------------EVNIGSMDLSANHRITQ 317

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +     K+ I+  +  AS       LA H      L        ++ +   +   ++   
Sbjct: 318 IVEVTGKSPIMVATDVASRGIGMMKLAIHPLPSPLLPFSFLSPSQAPSPIEVMVEKSNSL 377

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            +     R     D+  V++ +  +N E+ +HR GRTGRAG KG ++     +  ++A  
Sbjct: 378 CSVSTYVR-----DITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNSKQARD 432

Query: 359 ---LFREANVSV 367
              +  EA   +
Sbjct: 433 LVTILTEAKQQI 444


>gi|170040294|ref|XP_001847939.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
 gi|167863866|gb|EDS27249.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
          Length = 818

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 116/398 (29%), Positives = 193/398 (48%), Gaps = 32/398 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---ST 61
              P+ + E + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L      
Sbjct: 395 SGFPKEVLEIIDKVGYKEPTPIQRQAIPIGLQNRDIIGIAETGSGKTLAFLIPLLNWIQG 454

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     + +    P A+ +APTRELA Q+  E +      G+   V +GG+S   +   L
Sbjct: 455 LPKIERQETADQGPYAIILAPTRELAQQIEEETQKFGQPLGIRTVVVVGGLSREEQGFRL 514

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  D++ IL+  P    
Sbjct: 515 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDMGFEPDVQKILEYMPVTNL 574

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 575 KPDTEEAEDATKLMENFNTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 634

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    +V  +++   ++ IL        I+F + +       K L +  +    L G
Sbjct: 635 ERTEQIVHIVTENEKRKKLMEILSRGVEPPCIIFVNQKKGADVLAKGLEKLGYNACTLHG 694

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  +++G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 695 GKGQEQREYALASLKNGSKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 754

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           RAG+ G ++    ++       LF +    +V  P  S
Sbjct: 755 RAGKTGCAISFCTKDDSH----LFYDLKQIIVASPVSS 788


>gi|123449042|ref|XP_001313244.1| ATP-dependent RNA helicase p47 [Trichomonas vaginalis G3]
 gi|121895120|gb|EAY00315.1| ATP-dependent RNA helicase p47, putative [Trichomonas vaginalis G3]
          Length = 420

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 174/372 (46%), Gaps = 12/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   L   D++   ++G GKT  F +++   L    
Sbjct: 45  LKPELMHAISDCGFEHPSQVQQECIPHALLGTDIICQGKSGMGKTAVFVISVLQQLDPVP 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQN 123
              S       L IAPTRELA Q+  E +        V +V   G             + 
Sbjct: 105 GEVS------CLTIAPTRELAFQIATEFQRFTKFMPGVDSVVFYGGIPKATNIATLKEKK 158

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKRRM 182
              +V      L        L++S +K  V+DEAD++ +     D ++ I +  PK +++
Sbjct: 159 PCIVVATPGRCLDLIKEKDVLDVSKVKFFVIDEADKVFEKQDMKDTVDKIYNRLPKDKQV 218

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRY 241
           L+FSAT+  ++  + +++  +A  V +  + +       +  +    + ++  +V IL  
Sbjct: 219 LLFSATMPDSMKEICRSFTHNATEVYVDDDKKLTLHGLQQYYVKLAENEKNRKLVEILEN 278

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     ++F   +      T++L E     +A+SG ++Q++R  A    +  + R+ +AT
Sbjct: 279 YKFNQVVIFLDKKERAKNLTQLLNECGHPTIAISGNMTQEDRIRAFSEFKQFKHRILVAT 338

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
           D+ ARGID+  + +VI+ ++  + +  LHR GR GR G KG+++ FV+ +      +++ 
Sbjct: 339 DLIARGIDVERVNIVINYDMPDSTDTYLHRVGRAGRFGTKGLAISFVVTEEDVAMQKKIQ 398

Query: 361 REANVSVVWEPA 372
               + +   PA
Sbjct: 399 DRFELKIEQLPA 410


>gi|46907678|ref|YP_014067.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47092740|ref|ZP_00230526.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|254824491|ref|ZP_05229492.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254932635|ref|ZP_05265994.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993205|ref|ZP_05275395.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J2-064]
 gi|255522510|ref|ZP_05389747.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes FSL
           J1-175]
 gi|300765593|ref|ZP_07075572.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|46880946|gb|AAT04244.1| putative ATP-dependent RNA helicase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018928|gb|EAL09675.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes str.
           4b H7858]
 gi|293584194|gb|EFF96226.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593729|gb|EFG01490.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513694|gb|EFK40762.1| ATP-dependent RNA helicase [Listeria monocytogenes FSL N1-017]
 gi|328465494|gb|EGF36723.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 1816]
 gi|328474965|gb|EGF45759.1| ATP-dependent RNA helicase, putative [Listeria monocytogenes 220]
 gi|332311891|gb|EGJ24986.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
          Length = 435

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 109/394 (27%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E + 
Sbjct: 14  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKE- 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 73  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 188 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 308 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 367 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 400


>gi|221052953|ref|XP_002257851.1| RNA helicase [Plasmodium knowlesi strain H]
 gi|193807683|emb|CAQ38387.1| RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 546

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 192/363 (52%), Gaps = 8/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +++ E G+   T++Q  +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 145 NICEEILQSIDELGWKKPTAIQRKMLPCAFQQRDIIGLSETGSGKTACFIIPILQELRQK 204

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   V +    GGV +  +  +L    
Sbjct: 205 RQSF------FALVISPTRELCIQIAQHFQALGSNLLVNICTIFGGVDIVTQSLNLAKKP 258

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+V TPGR+ DH+      N+ +LK +V DEAD++L L F   I  +L   P+KR   +
Sbjct: 259 NIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPQKRTTFL 318

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ +++ ++++    S +    + + L  +   + ++  +  +
Sbjct: 319 FSATMTKSVAKLKKASLKNPIKIEVSNKYSTASTLIENYIFIPLKYKYTYLCSLCFHFSS 378

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+F +T A+  +          + + L G+L+Q +R ++L   +  R  + I+T V 
Sbjct: 379 RCIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILISTQVG 438

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+DL D+++VI+ +L  + +  +HR GRT RAGR G S+  + Q        + +  N
Sbjct: 439 ARGLDLKDIKIVINFDL-CSCKEYIHRVGRTARAGRTGKSITFVTQYDVENFLAIEKMLN 497

Query: 365 VSV 367
             +
Sbjct: 498 KKI 500


>gi|213409157|ref|XP_002175349.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
 gi|212003396|gb|EEB09056.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Schizosaccharomyces japonicus yFS275]
          Length = 672

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 182/375 (48%), Gaps = 27/375 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P+ +   L +  Y   +++Q A +   L+  D++  A+TGSGKT AF + L + +  
Sbjct: 261 SSLPEKVQATLKKVKYKEPSAIQRAAIPLLLQRNDIIGIAETGSGKTAAFVIPLVTHISR 320

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L   D  +    P A+ +APTRELA Q+  E        G+     +GG +   +   + 
Sbjct: 321 LPALDDTNMHLGPYAIILAPTRELAQQIQVEASKFSEPLGLRCVAVVGGHAFEEQSFQMS 380

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GAHIVV TPGRL D +  +   +S    VV+DEAD M+D+GF +D+   L S P     
Sbjct: 381 QGAHIVVATPGRLVDCLERRVFVLSQCYFVVMDEADRMVDMGFEEDVNKALTSLPPSGHD 440

Query: 183 L-----------------------MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
                                   MFSAT+   +  LAK Y    + + I +  +    +
Sbjct: 441 DDEAMVAGEDLLRSTRPTRARQTVMFSATLPTRVENLAKRYLNKPIMLTIGTIGQAVDRV 500

Query: 220 DYRAVLVALSDRDNAIVNI--LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R  ++A   +    +         A   +VF + + +     K L    ++VV L G 
Sbjct: 501 EQRVEMIADDAKRRKRLEEILNTNRYAPPIVVFVNLKRNCESLAKALYNMGWRVVTLHGS 560

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            SQ++R  A++ +R+  A + +ATD+A RGID+P++ LV++  ++ + E+  HR GRTGR
Sbjct: 561 KSQEQRERAIEQLRNHSADILVATDLAGRGIDIPNVSLVVNYNMAKSIEDYTHRIGRTGR 620

Query: 338 AGRKGMSVFVIPQNM 352
           AG+ G ++  +    
Sbjct: 621 AGKHGTAITFLGPED 635


>gi|218899452|ref|YP_002447863.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228902809|ref|ZP_04066954.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
 gi|228910119|ref|ZP_04073939.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228967351|ref|ZP_04128386.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218540620|gb|ACK93014.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9842]
 gi|228792386|gb|EEM39953.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228849636|gb|EEM94470.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 200]
 gi|228856818|gb|EEN01333.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis IBL 4222]
          Length = 436

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/373 (28%), Positives = 184/373 (49%), Gaps = 12/373 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   
Sbjct: 4   KTFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVH 115
           + + A  +          +  APTRELA Q+  E+    ++      +     IGG    
Sbjct: 64  NRINASREEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQ 117

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R    L+   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I   
Sbjct: 118 RSIEKLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAAR 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +
Sbjct: 178 MPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLV 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   
Sbjct: 238 NKMLLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEF 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +  
Sbjct: 298 QYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEA 357

Query: 356 AERLFREANVSVV 368
            + L ++ ++   
Sbjct: 358 LDSLEKQRHIEFK 370


>gi|255563905|ref|XP_002522952.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537764|gb|EEF39382.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 753

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/519 (24%), Positives = 230/519 (44%), Gaps = 47/519 (9%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P  +   + L++ GY+ +T +Q A L   L  +D+L +A+TGSGKT+AF + +   
Sbjct: 67  FKELPLSKRTKDGLTKAGYITMTEIQRASLPHSLCGRDILGAAKTGSGKTLAFVIPVLEK 126

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R+ P     ++ I+PTRELA Q+   L  +         + IGG       ++ 
Sbjct: 127 L--HRERWGPQDGVGSIIISPTRELAGQLFDVLRNVGKFHNFSAGLLIGGRKDIDTEKES 184

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  +I+V TPGRL  H+      + S L+ +VLDEAD +LD+GF+  +  I+   PK R
Sbjct: 185 VNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIISQIPKYR 244

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT + ++           + V V+  S+    + +   A++V L  + + + + 
Sbjct: 245 QTLLFSATQTKSVQDLARLSLKDPEYVGVHEKSDTATPNRLQQTAMVVPLEQKLDMLWSF 304

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN-ALQMMRDGRARV 297
           ++ H   N +VF S+   V    +   +    +         ++     +      +  V
Sbjct: 305 IKAHLNSNILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQGKRMVIYSQFCEQRSV 364

Query: 298 CIATDVAARGIDL-PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +TDVAARG+D    ++ V+  +   +  + +HR GRT R    G SV  +  +  +  
Sbjct: 365 LFSTDVAARGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYQSGGRSVLFLLPSEMKML 424

Query: 357 ERLFREANVSVVWEPAP-----------SVEAIRERDAQR--ILQDPLFLDSIQ-GDEKK 402
           E+L +EA V + +  A            S   ++  D Q+  I     +L SI    +K+
Sbjct: 425 EKL-QEAKVPIQFIKANAKRLQPVSGLLSALLVKNEDLQKLAIRAFITYLRSIYIQKDKE 483

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
           + DV+  K   ++ +A        GL    +I  ++      +   +S   +     +D+
Sbjct: 484 VFDVM--KLSIDEYSASL------GLPMTPKIRFLNQKMKGKKISGNSSLLESDNSDKDD 535

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGA 501
            +      L+VG  +      ++          +  IG 
Sbjct: 536 AE------LAVGRFRG----EILG-----GQREKLDIGD 559


>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 815

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/417 (28%), Positives = 200/417 (47%), Gaps = 9/417 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E N+ + I   L+  G+ + T +Q   +   L  KD++ SA TGSGKT AF + + 
Sbjct: 304 MTFQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPIL 363

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +     + + PTRELAVQ       L   T V     +GG S+  +  
Sbjct: 364 ERLLFRPRKVPTSR---VVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQEN 420

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 421 VLKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 480

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++ +I  L +      VR+ + S+    S +              R   +
Sbjct: 481 SRQTMLFSATMTDSIDKLIRVGMNRPVRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYL 540

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +++ +   +K  I+F   +    R   + +    +   L G LSQ++R  +++  RDG+ 
Sbjct: 541 LHLCKEIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRIKSVENFRDGKV 600

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 601 AFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI 660

Query: 356 AERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
            +   R          +  +E A+ +  AQ+  +    +  I  +EK    +  A+ 
Sbjct: 661 VKLAVRAGKAQGAKIASRVIEQAVADSWAQKAEEMADEVAEILQEEKTEKQLSQAEM 717


>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 541

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 13/378 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            +   ++  GY   T VQ   +   L  +D++V++QTGSGKT AF L + + L+      
Sbjct: 131 EVLRNVAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKTAAFMLPVITQLIGTCHSP 190

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
           +P+     +A+ PTRELA+Q+  E       T +      GG  +  + R+L  G  IV+
Sbjct: 191 NPS----CVALCPTRELAIQIFEETRKFCKGTDLKTTCVFGGAPITEQIRNLSRGIDIVI 246

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----ILDSSPKKRRMLMF 185
            TPGRL D ++   + +S ++ ++LDEAD MLD+GF   ++             R+ ++F
Sbjct: 247 ATPGRLIDILKQHCITLSEVRFLILDEADRMLDMGFEPQMQEVINGWDMPPADDRQTMLF 306

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT   A+  LA+++ +                I+ R +  +  D+ + ++ +++     
Sbjct: 307 SATFPDAVRNLARDFMRPKYCRISVGMQDAPKSIEQRFIYCSEMDKFSELLGVIKEVDGP 366

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + SV R  + L +    VVA+ GE    +R  AL+    GRA + +ATDVA+
Sbjct: 367 -TLVFAERKVSVDRIERFLYDEHTAVVAIHGERQMDQRLAALRQFTTGRANIMVATDVAS 425

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+ ++  VI+ +L ++ +   HR GRTGRAG+ G++     ++      +L +    
Sbjct: 426 RGLDISNVAHVINLDLPTDLDTYTHRIGRTGRAGKHGLATSFFNESNNAFLAQLIQHLRS 485

Query: 366 SVVWEPAPSVEAIRERDA 383
                  P  E + E +A
Sbjct: 486 K----NLPIPEGLEEYEA 499


>gi|308800454|ref|XP_003075008.1| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
 gi|119358858|emb|CAL52279.2| Ddx49 Ddx49-related DEAD box helicase superfamily II protein (IC)
           [Ostreococcus tauri]
          Length = 419

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 192/412 (46%), Gaps = 17/412 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+ +    V+ + L    + + + VQ   +   L  KDV+  A TGSGKT AF L +
Sbjct: 1   MATFDELGLCNVVLKILKRVHFRSPSDVQSTCIPQILAGKDVIGIANTGSGKTAAFALPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL ++PTRELA Q+  +     A TG+   V  GG  + ++ 
Sbjct: 61  VDMLSRDP------YGIFALCLSPTRELANQIADQFTVFGAGTGLNCMVITGGEDLIQQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIR---GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             L    +IVV TPGRL +H           S LK ++LDEAD +LD  F  ++++++ +
Sbjct: 115 TALSRRPNIVVATPGRLFEHFMHSSNTVQYFSKLKCLILDEADRLLDSSFAAELKYLMSN 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P++R+ LMFSATI+ ++T L              S  +           +    +D  +
Sbjct: 175 LPQQRQTLMFSATITKSVTALQSMLGDAVFYYEDKSVKKTAVRCSQSYCFMPERIKDVNL 234

Query: 236 VNILRY---HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           V ++R      AK  I+F +T       +++L        +L     Q+ER N+L + ++
Sbjct: 235 VKLVRELALVEAKRTIIFTATIQKCELLSQMLTTLGIPSSSLHAAKKQKERLNSLGVFKN 294

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  ++ +ATDVAARG+DLP ++++++ ++ ++    +HR GRT R    G +V  + Q  
Sbjct: 295 GTVQILVATDVAARGLDLPSVDMILNYDVPTDVRQYIHRIGRTARFEASGKAVTFVTQFD 354

Query: 353 QRRAERLFREANVSV---VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
             + + + +     +     E +   E + E  A R +           DEK
Sbjct: 355 ILKLKHIEKTIGQQLDSYELEGSSGAELVGEVFAARRVAKMRMASPGGFDEK 406


>gi|126307666|ref|XP_001371632.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 52
           [Monodelphis domestica]
          Length = 608

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 102/427 (23%), Positives = 168/427 (39%), Gaps = 25/427 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + + +   G+ N T +Q   +   L  +++L SA TGSGKT+AF + +   L    
Sbjct: 180 IHSRLLQNILNAGFQNPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPT 239

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRDLQNGA 125
           ++        AL I+PTRELA Q  REL  L   TG  + +         +         
Sbjct: 240 NK-----GFRALIISPTRELASQTHRELVRLSEGTGFRIHMIHKAAVAAKKFGPKSSKKF 294

Query: 126 HIVVGTPGRLCDHIRGKGL-----NISHLKAVVLDEADEMLDLGFRDDIEFIL--DSSPK 178
            I+V TP RL   ++         N+  L     D+  E    GFRD + FI    +S K
Sbjct: 295 DILVTTPNRLIYLLKQDPPGIDLKNVEWLVVDESDKLFEDGKTGFRDQLAFIFLACTSHK 354

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR +  +            N          A  +   +       + + + +  AI ++
Sbjct: 355 VRRAMFSATFAHDVEQWCKLNLDSVISVSIGARNSAAETVEQELLFVGSETGKLLAIRDL 414

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  +          L      V  +  E +QQ+R N +   R G+  V 
Sbjct: 415 IKKGFHPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 474

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V    ++ +   R 
Sbjct: 475 ICTALLARGIDFKGVNLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRS 534

Query: 356 AERLFREANVSVVW-----EPAPSVEAIRER----DAQRILQDPLFLDSIQGDEKKMVDV 406
              + ++A   V          PS +  +      + + I   P +       E+K++  
Sbjct: 535 VANVIQQAGCPVPEYIRSFHKLPSKQKKKMIKKPLERESISTTPQYFLENAKKEQKIIHQ 594

Query: 407 LLAKHDP 413
              K   
Sbjct: 595 NSEKMTA 601


>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 455

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 187/373 (50%), Gaps = 4/373 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   Q I +AL+ +  V+  ++Q   L   L  +D++  A+TG GKT+ FG+ +  
Sbjct: 9   TFTELGVAQEITDALATQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + D       P AL + PTREL VQVG +L        V V    GG     + + 
Sbjct: 69  RIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF   IE I+     + 
Sbjct: 129 LKDGTDLVVGTPGRLIDLYNRGELRLDTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH 188

Query: 181 RMLMFSATISPAI--TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+  AI         +   +R  ++ E   ++            D+   I  +
Sbjct: 189 QTMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRV 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    I+F  T+ S +   + LA   FQV ++ G++SQ  R  +LQ  RDG   + 
Sbjct: 249 LQARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   +    +HR GRTGRAG  G +V ++  +   + + 
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWKL 368

Query: 359 LFREANVSVVWEP 371
           +  E  +     P
Sbjct: 369 INDELGLGKDELP 381


>gi|149910890|ref|ZP_01899522.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
 gi|149806044|gb|EDM66027.1| putative ATP-dependent RNA helicase [Moritella sp. PE36]
          Length = 424

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 110/366 (30%), Positives = 183/366 (50%), Gaps = 7/366 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--- 66
            +   L+E  Y+  T +Q   +   L  +D++  A TGSGKT AF L L   L  E    
Sbjct: 18  PLLTRLTEMEYLQPTPIQAQAIPSVLAGRDLIAGANTGSGKTAAFALPLLQQLHTEKQLS 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
           D  S  +    L + PTRELA+QV   ++   A     +      GGVS + +   L+ G
Sbjct: 78  DTSSKGNYVTGLILVPTRELAIQVADSIKSYAAHLNGAIKTLAVFGGVSANTQMLALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK++++L+
Sbjct: 138 TDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTEELSALLALTPKQKQILL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +  L +    D V + + S +        R   V   ++   + ++++ H  
Sbjct: 198 FSATFPEQVQALTQELLNDPVEIQLQSADASTL--VQRVFTVTKGEKTALLAHLIKRHEW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +++ S +     LA+         G+  Q  R   L   + G+  V IATD+A
Sbjct: 256 RQVLIFVNSKHSCNHLADKLAKRGITSQVFHGDKGQSARIRTLDGFKAGQVHVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I          + ++  
Sbjct: 316 ARGIDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHEDYHHFSTIEKKNK 375

Query: 365 VSVVWE 370
           + +  E
Sbjct: 376 IRLERE 381


>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
 gi|74897375|sp|Q55BR9|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
           Full=DEAD box protein 49
 gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
          Length = 508

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 115/414 (27%), Positives = 196/414 (47%), Gaps = 17/414 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE +     +     + G+   +++Q   +   L+ +D++ SA+TGSGKT +F + + 
Sbjct: 4   KTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPIL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L  +           A+ + PTRELAVQ+G +   + A   V  +V IGG+    +  
Sbjct: 64  NQLSEDP------YGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQAL 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL  H+           K +VLDEAD +L   F  +I  IL+  P 
Sbjct: 118 ILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPP 177

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +     FSAT++  +T L              S+      +    + +    +D  +V
Sbjct: 178 PEKRQTLLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLV 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            IL+ H   +AIVF +   +V     +L +     V+L   L Q+ R  AL+  + G+ +
Sbjct: 238 YILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVK 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVA+RG+D+PD+++VI+ +LS++ ++ +HR GRT R GR G ++  I  +     
Sbjct: 298 VLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLI 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDV 406
           + +       +        E  R       A++I++  + LD I+   K+    
Sbjct: 358 KGIEEIIKKQLELYKTDDDEVFRHLKEASTARKIVE--IHLDEIEFGVKQKERR 409


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 103/395 (26%), Positives = 175/395 (44%), Gaps = 20/395 (5%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ F  +         +   L E G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 134 LQNFSELSSRYGCESYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAF 193

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L     + S      A+ + PTRELA Q  RE + +       + +    +  
Sbjct: 194 VCPMLMKL-----KHSSKDGIRAVILCPTRELASQTTRECKKMAKGNKFRIKLMTKELVR 248

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FIL 173
            ++   L     I+V TP RL   IR K +++S ++ +VLDE+D++ +LG    I+    
Sbjct: 249 TKDLSRL--PCDILVSTPLRLQLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQIDSVFK 306

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+  ++  LA+    DAVRV +  +N     I  +     +   + 
Sbjct: 307 ACSNPSVIRSLFSATLPESVEELARTIMHDAVRVIVGRKNAASETIKQKLVFTGSEEGKL 366

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F   +   +   + L     +V  +  +L Q +R  A+   R 
Sbjct: 367 IALRQSFAESLNPPVLIFVQNKERANELYEELKFDSIRVGVIHSDLLQTQREIAVDDFRA 426

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G + V IATDV ARG+D   +  VI+ +  ++    +HR GR+GRAGR G ++    +N 
Sbjct: 427 GNSWVLIATDVVARGMDFKGVNCVINYDFPNSAAAYIHRIGRSGRAGRTGEAITFYTEND 486

Query: 353 QRRAERLFREANV-SVVWEPAPS-VEAIRERDAQR 385
                 +   ANV +V     PS + A+R+   +R
Sbjct: 487 VPVLRNI---ANVMTVSGCEVPSWIMALRKVKWRR 518


>gi|206971225|ref|ZP_03232176.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
 gi|206733997|gb|EDZ51168.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH1134]
          Length = 436

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 183/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++  A   +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAADQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|145517903|ref|XP_001444829.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412262|emb|CAK77432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 190/380 (50%), Gaps = 8/380 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I   +    +   T +Q  +    L   D++  A+TGSGKT  + L     +  +N
Sbjct: 107 FPPQIQNVIDGLNFRAPTPIQSVVFPLILSGYDLIGVAETGSGKTFGYLLPGLIQIKCQN 166

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
              +  +  + P  L +APTREL +Q+ +++        + VA   GG +  ++ + ++ 
Sbjct: 167 YGSNFRNRINGPEILILAPTRELVMQIAQQVSLFMKPNNLTVATAYGGQNRDQQAQQIKR 226

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+V  PGRL D ++   L++S +  +V+DEAD +LD+GF DD+ FI+  + + R+ +
Sbjct: 227 NPDILVACPGRLKDFLQEGILDLSKVTYLVIDEADRLLDMGFEDDVRFIVQRTRQDRQTV 286

Query: 184 MFSATISPAITTL--AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            FSAT   A+  L      +         S    + +ID   + +  + +   +++IL  
Sbjct: 287 FFSATWPKAVRNLSLDFCAEDPIYVQVGRSNLTVNKNIDQEIICLYNNQKLQTLLDILDQ 346

Query: 242 -HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  TR S  + +  + +  +  VAL G  +Q +R + ++  + G  ++  A
Sbjct: 347 LKINDKVLIFAETRISCEQLSVDMTQEGYYAVALHGNKTQGQRDSIMECYKKGDTKLLCA 406

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TD+A+RG+D+ D+ +VI+ +     ++ +HR GRTGRAGRKG ++    I ++  + A  
Sbjct: 407 TDLASRGLDVSDITVVINYDFPKYFDDYIHRIGRTGRAGRKGRAISFFAIGKDQPQMARE 466

Query: 359 LFREANVSVVWEPAPSVEAI 378
           L +   ++ +     +++ I
Sbjct: 467 LLKFDKINKMKLDVQTMQDI 486


>gi|119963413|ref|YP_949241.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
 gi|119950272|gb|ABM09183.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
          Length = 576

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 124/373 (33%), Positives = 188/373 (50%), Gaps = 4/373 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ I E+L+  G      +Q   L   L  +DVL   +TGSGKT+AF + L
Sbjct: 4   MTTFAALGTPKPIAESLAADGIEEAFPIQVKTLPDTLAGRDVLGRGRTGSGKTIAFAIPL 63

Query: 59  ASTL-LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            + L   E   F     P+ L +APTRELA Q+   +E L    G+   V  GG+S  R+
Sbjct: 64  VARLAEREAKHFRKPGRPMGLVLAPTRELATQINATIEPLAKAMGLNTTVIYGGISQARQ 123

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+ G  IV+  PGRL D IR + L +  ++  VLDEAD M DLGF   ++ ++D +P
Sbjct: 124 EKALRAGVDIVIACPGRLEDLIRQRILTLEAVEVTVLDEADHMADLGFLPVVKKLMDMTP 183

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            + + L+FSAT+   +  L   Y  + +  ++       + +++  ++V        ++ 
Sbjct: 184 TQGQRLLFSATLDNGVDKLVNRYLSNPLTHSVDDPQAAVTTMEHHVLVVNDQTVKKQLIV 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  + F  T+    +  K L +     V L G LSQ  R   L    +G  RV
Sbjct: 244 ELASGAGRRVL-FMRTKHHARKLAKTLTDAGIPAVDLHGNLSQNARDRNLAEFSNGDVRV 302

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+ + D+ELVIH +  +  +  LHRSGRT RAG  G  V +     Q   +
Sbjct: 303 LVATDVAARGVHVDDVELVIHVDPPTEHKAYLHRSGRTARAGSDGTVVTLTLPEQQSDVK 362

Query: 358 RLFREANVSVVWE 370
           +L + A V V +E
Sbjct: 363 KLMKAAGVDVSFE 375


>gi|6682259|gb|AAF23311.1|AC016661_36 putative RNA helicase [Arabidopsis thaliana]
          Length = 545

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 153/367 (41%), Gaps = 11/367 (2%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +K F  +         I   L+E G+   T +Q   +   L  ++    A TGSGKT AF
Sbjct: 136 LKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAF 195

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L   N R S      A+ ++P RELA Q  RE + L   +   + +    +  
Sbjct: 196 ICPMLIKLKVLNCRPS-TDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVK 254

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L     I      +    I+ K +++S ++ +VLDE+D++ +      I+ ++ 
Sbjct: 255 TADFSKLWCDVLISTPMRLKRA--IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 312

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+  ++  LA++   DAVRV I  +N     +  +     +   + 
Sbjct: 313 ACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKL 372

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++         L     +   +  +L   ER NA+   R 
Sbjct: 373 LALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 432

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V IATDV ARG+D   +  VI+ +   +    +HR GR+GRAGR G ++    +  
Sbjct: 433 GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 492

Query: 353 QRRAERL 359
                 +
Sbjct: 493 VPFLRNI 499


>gi|301755882|ref|XP_002913779.1| PREDICTED: ATP-dependent RNA helicase DDX50-like [Ailuropoda
           melanoleuca]
          Length = 739

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 141 FSNFPISEETIKLLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 200

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 201 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINHI 258

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 259 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 318

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 319 EDNPQTLLFSATCPPWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 378

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 379 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 437

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 438 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPR 497

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 498 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 528


>gi|157693014|ref|YP_001487476.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
 gi|157681772|gb|ABV62916.1| ATP-dependent RNA helicase [Bacillus pumilus SAFR-032]
          Length = 439

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 191/388 (49%), Gaps = 14/388 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I +A+ E G+   T +Q+ I+   L+ + V+  +QTG+GKT A+ L L  ++   
Sbjct: 10  ELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHSIDPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+ +E + +             + IGG    +  + L
Sbjct: 70  KEHV------QVVITAPTRELANQIFKEAQTILKNASPEEEIKAKLYIGGTDKQKSIQKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N  H+VVGTPGR+ D I  + LN+    ++V+DEAD MLD+GF +D++ I    P++ +
Sbjct: 124 KNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y  +    ++  +     +I +  V     D+   +  ++  
Sbjct: 184 MLVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQRDKLKLLHEMVTN 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F +T+ +V      L E   +V  L G L+ +ER   ++ + D      +A+
Sbjct: 244 VQPYLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIVAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G+++ +     +    ++ +
Sbjct: 304 DLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQIEK 363

Query: 362 E----ANVSVVWEPAPSVEAIRERDAQR 385
                 N ++V       +   +R  ++
Sbjct: 364 MGVVFENKTIVHGEWRDADDRLKRQRRK 391


>gi|156101247|ref|XP_001616317.1| DEAD/DEAH box ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148805191|gb|EDL46590.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           vivax]
          Length = 599

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 104/419 (24%), Positives = 203/419 (48%), Gaps = 10/419 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++   + + + L E  +V LT +Q   +   L  KD+L +A+TGSGKT+AF +   + 
Sbjct: 148 FEDLDICEALKKGLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGKTLAFLVPSINI 207

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N +F P +    L I+PTREL +Q+ +  + L         + IGG+S + E++  
Sbjct: 208 LY--NIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 265

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I++ TPGRL DH++        +L ++++DEAD +L +GF ++I  I+   PKKR
Sbjct: 266 IHGINILIATPGRLLDHMQNTKEFIYKNLISLIIDEADRLLQIGFEEEINLIVKRLPKKR 325

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT +  +  L +   +  + + + ++      +     LV    R   +   L+
Sbjct: 326 QTALFSATQTTKVENLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 385

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF +   SV  +  +L         + G+  Q +R  +       ++ + + 
Sbjct: 386 RNISKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNKRLKSFSEFSAAQSAILLC 445

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQRRAER 358
           T+VAARG+D+P++  +I  +   + +  +HR GRT R G+   G ++  + ++  +    
Sbjct: 446 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GKDSSGSAIIFLMKHELKFLNY 504

Query: 359 LFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L +  N+ +  +   PS     +   + I+     L  +  +  K        +  + +
Sbjct: 505 L-KFYNIPINQFAYDPSKLINVQSHIESIVTKNFHLHKMAREAFKSYLNGYITYALKDV 562


>gi|47567847|ref|ZP_00238555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
 gi|47555524|gb|EAL13867.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           G9241]
          Length = 436

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCSEDQIITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + N+   
Sbjct: 364 QRNIEFK 370


>gi|218676540|ref|YP_002395359.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 468

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 181/379 (47%), Gaps = 7/379 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q  ++   L  +D++  A TGSGKT AF L L   +  +    
Sbjct: 58  PLMARLTELEYQQPTPIQAQVIPSVLAGRDLIAGANTGSGKTAAFALPLLQQIHEDAPLD 117

Query: 68  -RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            R    +    L + PTRELA QV   ++         +      GGVSV+ + + L+ G
Sbjct: 118 RRSGKGNYVSGLILVPTRELAKQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGG 177

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF ++++ IL   P K++ L+
Sbjct: 178 TDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLL 237

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL      D + V + S N        R   V    +   + ++++ H  
Sbjct: 238 FSATFPEQVKTLTHELLNDPIEVQLQSANASTL--VQRVFEVEKGRKTALLAHLIQQHEW 295

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + S       L +         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 296 RQALIFVNAKNSCEHLADKLYKRGIIAEVFHGDKGQGSRTRILEDFKSGEIDVLIATDIA 355

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GR+G  G+++ +I          + ++  
Sbjct: 356 ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRSGEVGLALSLIDHEDYHHFTIIEKKNK 415

Query: 365 VSVVWEPAPSVEAIRERDA 383
           + +  E     E   E  A
Sbjct: 416 IRLEREQIEGFEVDEEATA 434


>gi|125559398|gb|EAZ04934.1| hypothetical protein OsI_27114 [Oryza sativa Indica Group]
          Length = 540

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 105/403 (26%), Positives = 188/403 (46%), Gaps = 22/403 (5%)

Query: 1   MKIFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +         +   LS+ G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 141 LENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAF 200

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   +     +        A+ + PTRELA Q  RE + L       + +    +S 
Sbjct: 201 LFPILMKI-----KPGSKEGVKAVILCPTRELAAQTTRECKKLAKGRKFYIKLMTKDLSK 255

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FIL 173
               +D+     I+V TP RL   ++ + L++S ++ +VLDE+D++ +LGF + I+  + 
Sbjct: 256 SGNFKDM--HCDILVSTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVK 313

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRD 232
             S       +FSAT+  +I TLA+    DAVRV +  +N   S I  + +       + 
Sbjct: 314 ACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKL 373

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++       K LA    +   +  +L +++R +A+  +R 
Sbjct: 374 LALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRA 433

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IAT+V ARG+D   +  VI+ +   +    +HR GR+GRAGR G ++    +  
Sbjct: 434 GQTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEED 493

Query: 353 QRRAERLFREANVSVVWE-PAPS-VEAI--RERDAQRILQDPL 391
           +     +   ANV +      PS ++A+   +R   R+ +DP+
Sbjct: 494 KPFLRNI---ANVLISSGCEVPSWIKALPKLKRKKHRVNRDPI 533


>gi|312085225|ref|XP_003144594.1| hypothetical protein LOAG_09017 [Loa loa]
 gi|307760242|gb|EFO19476.1| hypothetical protein LOAG_09017 [Loa loa]
          Length = 802

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 111/400 (27%), Positives = 183/400 (45%), Gaps = 23/400 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     I E +   GY   T VQ+  +   +  +D++  AQTGSGKT AF + L +
Sbjct: 343 LFADLKLHPWIEENIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLIN 402

Query: 61  TLLAEND----------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            +L                     P AL ++PTREL++Q+  E      +T +  A+  G
Sbjct: 403 NVLQAGPDALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYG 462

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I
Sbjct: 463 GRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQI 522

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRA 223
             I+D S    +    +A  S       +   +D +  N          +   + +    
Sbjct: 523 RQIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 582

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            +     +   +  +     +   +VF  T+   S     L +  + VVA+ G+L Q +R
Sbjct: 583 WVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 642

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              L+  R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G+
Sbjct: 643 EKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGL 702

Query: 344 SVFVI---PQNMQRRAERLFREANVSV-VWEPAPSVEAIR 379
           +        +N+ R    L  EAN  +  W    S +A R
Sbjct: 703 ATSFFNDKNRNIARDLAELVVEANQELPEWLEKISADAQR 742


>gi|330465173|ref|YP_004402916.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
 gi|328808144|gb|AEB42316.1| DEAD/DEAH box helicase domain-containing protein [Verrucosispora
           maris AB-18-032]
          Length = 572

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 157/574 (27%), Positives = 251/574 (43%), Gaps = 46/574 (8%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P+ +  AL+ +G      +Q A +   L  +DVL   QTGSGKT+AFGL L +
Sbjct: 35  TFEALGLPEPLARALARQGITTPFEIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPLLA 94

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            + A+ DR  P+  P AL + PTRELA+QV   L  L    GV +   +GGV   R+   
Sbjct: 95  RI-ADGDRARPSR-PRALILVPTRELAMQVNDALAPLGRTIGVFLKTAVGGVPYDRQIDA 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   
Sbjct: 153 LRRGVEVMVATPGRLADLIERGICKLDDVEITVLDEADQMADMGFLPEVTDLLAKTPAHA 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  D V  + A      S +D+  +L+  SD+    V    
Sbjct: 213 QRLLFSATLDADVDALVQRFMTDPVTHSTAPATAAVSTMDHHLLLIPPSDK--FPVTASI 270

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              A   IVF  T+  V R    LA    +   L G  +Q+ R+  L   R+GR  V +A
Sbjct: 271 AARAGRTIVFARTQLGVDRLVSQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRTNVLVA 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  + LV+H +   +P++ LHR+GRT RAG  G    ++    +R    + 
Sbjct: 331 TDVAARGIHVDGVTLVLHVDPPKDPKDYLHRAGRTARAGETGAVATLVLPKQRRTTLAML 390

Query: 361 REANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
            +A V        + + A+ E    R        D  +   +        + D       
Sbjct: 391 EKAGVQPAETRVRAGDPALTELTGAREPSGVPVRDEPEAPRRSSRPGGPRRFDGPTTERR 450

Query: 420 F----LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGS 475
           +    +   R G    ++        G  R+ DDSR     G   D  +G+  +    G+
Sbjct: 451 YRDRPVSDRRYGDQPRDDRRYRDDSRGTGRYGDDSRG---TGRYGDESRGAGRY----GA 503

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
             + E         RS G + +S        + ++           R   +  + ++ + 
Sbjct: 504 DSRGE---------RSYGDSSRS--------EHSY-------GGHARGERRFGEPVRGER 539

Query: 536 LGGEKPDFRGYKSSGFKSKNSQD-GATKRFKRFK 568
             G++P   G    G + +  +D        R +
Sbjct: 540 RYGDRPRSDGR---GPQDRPREDWRGPSGRSRAR 570


>gi|109114658|ref|XP_001112113.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Macaca
           mulatta]
          Length = 599

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML--------DLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESNKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R GR  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGRIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 517 TEDDKPLLRSVANVIQQAGCPVPE 540


>gi|238491382|ref|XP_002376928.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
 gi|220697341|gb|EED53682.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
          Length = 665

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/385 (27%), Positives = 179/385 (46%), Gaps = 33/385 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++   +P+ + E +++ GY   T +Q A +   ++ +D++  A TGSGKT +F L L
Sbjct: 247 MRSWDESGLPKRLMELVNKVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPL 306

Query: 59  ASTL----LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +      G  V   +GG S 
Sbjct: 307 LVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSF 366

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 367 EEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 426

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------ 216
           + P            +    +     +    +  + +                       
Sbjct: 427 ALPVSNEKPDSEEAENSMAMSQHIGTKDRYRQTMMYTATMPTAVERIARKYLRRPAIVTI 486

Query: 217 -------SDIDYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEH 267
                    ++ R   +A  D+    +  +          IVF + + +     + + + 
Sbjct: 487 GSAGEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQW 546

Query: 268 LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN 327
            F  V L G  +Q++R  AL  +R+G+  V +ATD+A RGID+PD+ LVI+  +++  E+
Sbjct: 547 GFSSVTLHGSKTQEQREAALASVRNGQTDVLVATDLAGRGIDVPDVSLVINFNMATTIES 606

Query: 328 LLHRSGRTGRAGRKGMSVFVIPQNM 352
             HR GRTGRAG+ G+++  +    
Sbjct: 607 YTHRIGRTGRAGKSGVAITFLGNED 631


>gi|45709415|gb|AAH67878.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapiens]
          Length = 631

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 167/372 (44%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + +++   G +  T +Q       L+  D++V AQTG+GKT+++ +     L 
Sbjct: 227 FQQYPD-LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLD 285

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+ V  E    Y+  G+      GG + + +  D+  
Sbjct: 286 SQPISREQRNGPGMLVLTPTRELALHVEAECSK-YSYKGLKSICIYGGRNRNGQIEDISK 344

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTV 404

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA +Y +   +           + +    ++    ++       +   
Sbjct: 405 MTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENM 464

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S +      +           +L G   Q ++  A++  + G  ++ I T
Sbjct: 465 SPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITT 524

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ +RG+DL D+  V + +   N +  +HR G  GR G+ G SV +I Q   + A  L +
Sbjct: 525 DIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 585 ILDRANQSVPED 596


>gi|226468232|emb|CAX69793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Schistosoma japonicum]
          Length = 606

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 199/419 (47%), Gaps = 40/419 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STL 62
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L      L
Sbjct: 182 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 241

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 242 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 301

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------ 176
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL         
Sbjct: 302 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 361

Query: 177 -------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 362 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 421

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL          F + +       K L +  +  V L G 
Sbjct: 422 RVEQIVYMVSEQEKRRKLLEILAAGLDPTCYYFVNQKKGADVLAKGLEKLGYSAVVLHGG 481

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 482 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 541

Query: 338 AGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPA---------PSVEAIRERDAQ 384
           AG+ G+++ ++ +         ++L  ++ VS               P V A ++R A+
Sbjct: 542 AGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGVLAAKKRRAE 600


>gi|148700135|gb|EDL32082.1| mCG141508, isoform CRA_a [Mus musculus]
          Length = 624

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 71  FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 131 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQI 188

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 189 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 248

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 249 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 308

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 309 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 367

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 368 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 427

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 428 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 458


>gi|154324248|ref|XP_001561438.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
 gi|160419159|sp|A6RJA2|PRP28_BOTFB RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|150842752|gb|EDN17945.1| hypothetical protein BC1G_00523 [Botryotinia fuckeliana B05.10]
          Length = 783

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 107/382 (28%), Positives = 177/382 (46%), Gaps = 29/382 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ + + + + GY   ++VQ A +   L+ +D++  A TGSGKT AF L L   +  L 
Sbjct: 387 LPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELP 446

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + F+    P A+ +APTRELA Q+  E +      G      +GG S+  +  +L+NG
Sbjct: 447 PLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNG 506

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D I  + L +     +++DEAD M+DLGF + +  ILD+ P       
Sbjct: 507 AEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALPVSNEKPD 566

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------SDI 219
                     +     +    +  + +                                +
Sbjct: 567 TDDAEDAQAMSRHLGGKDRYRQTMMYTATMPPAVEKIAKKYLRRPAIVTIGNIGEAVETV 626

Query: 220 DYRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           + R   VA  D+    +N +      A   IVF + + +     + +    F  V L G 
Sbjct: 627 EQRVEFVAGEDKRKKRLNEILASGEFAPPIIVFVNIKRNCDAVARDIKHMGFTSVTLHGS 686

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q++R  AL  +R G   V +ATD+A RGID+PD+ LV++  +++N E+  HR GRTGR
Sbjct: 687 KTQEQREAALASVRSGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGR 746

Query: 338 AGRKGMSVFVIPQNMQRRAERL 359
           AG+ G+++  +          L
Sbjct: 747 AGKSGVAITFLGNEDSDTMYDL 768


>gi|82778002|ref|YP_404351.1| ATP-dependent RNA helicase SrmB [Shigella dysenteriae Sd197]
 gi|309784609|ref|ZP_07679244.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
 gi|81242150|gb|ABB62860.1| ATP-dependent RNA helicase [Shigella dysenteriae Sd197]
 gi|308927506|gb|EFP72978.1| ATP-dependent RNA helicase srmB [Shigella dysenteriae 1617]
          Length = 444

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D+  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|170719699|ref|YP_001747387.1| ATP-dependent RNA helicase DbpA [Pseudomonas putida W619]
 gi|169757702|gb|ACA71018.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
          Length = 461

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 127/376 (33%), Positives = 201/376 (53%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GY ++T +Q   L   LR +D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FATLPLSAAMLANLDALGYASMTPIQAQSLPVILRGQDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +EL  L   +  + +    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+    L +  L  +VLDEAD MLD+GF D I  I+  +P +R
Sbjct: 122 LEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA ++ +   +V + S +  +   + R + +    R  A+  +L 
Sbjct: 182 QTLLFSATYPAGIEQLAADFMRKPQQVKVESLHTDNQI-EQRFIEIDPQQRLEAVTRVLG 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           ++  ++ + FC T+         L        AL G+L Q++R   L M  +  + V +A
Sbjct: 241 HYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG KG++V ++      RA+ + 
Sbjct: 301 TDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGIAVSLVAPAEGHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
                 + W+   S++
Sbjct: 361 ALQKSPLRWDQLDSLK 376



 Score = 60.0 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 23/64 (35%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            +   ++ G K K     ++  L   +GI  + +G I +     FV V         + +
Sbjct: 387 MTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIAIFDFQAFVAVERALAKQAMQRL 446

Query: 526 KLDK 529
              K
Sbjct: 447 NSGK 450


>gi|332230780|ref|XP_003264573.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Nomascus leucogenys]
          Length = 619

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 192/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLFVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|302822183|ref|XP_002992751.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
 gi|300139492|gb|EFJ06232.1| hypothetical protein SELMODRAFT_448879 [Selaginella moellendorffii]
          Length = 733

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 121/426 (28%), Positives = 209/426 (49%), Gaps = 24/426 (5%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + + +A ++ G+   T +Q   L   L+ +D++  AQTGSGKT AF L +   L  +   
Sbjct: 183 EELVDACTKLGWKAPTPIQVEALPLALQGRDLIGLAQTGSGKTAAFALPILQALFQQCHP 242

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
           F       A  ++PTRELA+Q+  + E L ++ GV     +GGVS+  +   L    HIV
Sbjct: 243 F------FACVLSPTRELAIQISEQFEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIV 296

Query: 129 VGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V TPGRL DH+      ++ ++K +VLDEAD++L   F  +++ IL   P++R+  +FSA
Sbjct: 297 VATPGRLLDHLTNTKGFSLRNVKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSA 356

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T++  +  L +   ++  +V ++S+      +    V V    +D   V +L       A
Sbjct: 357 TMTNKVAKLQRACLRNPTKVEVSSKYTTALTLKQEYVFVPAKHKDCYFVFLLNEMAGSTA 416

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T  S  R   +L    F  + +SG++SQ +RS AL   + G   + I TDVA+RG
Sbjct: 417 MVFTRTCDSTRRLALILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVASRG 476

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+P +++           + +HR GRT RAGR G ++ ++ Q      +R+     +++
Sbjct: 477 LDIPSVDV-----------DYIHRVGRTARAGRSGRAISIVTQYDVDLYKRIEDLIGMTL 525

Query: 368 VWEPAPSVEA--IRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
              PA + E   + ER ++      + +      +K          + + + A    + R
Sbjct: 526 PEFPAKADEVLLLEERVSEAQRLAAMHIREKDASKKSKKRRNGDDDEADDVLA----LGR 581

Query: 426 AGLCAP 431
            G   P
Sbjct: 582 QGGHKP 587


>gi|255721553|ref|XP_002545711.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
 gi|240136200|gb|EER35753.1| hypothetical protein CTRG_00492 [Candida tropicalis MYA-3404]
          Length = 770

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/463 (22%), Positives = 202/463 (43%), Gaps = 11/463 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P  +   + L E  +V+LT +Q+  +   L+ +D++ +A+TGSGKT+AF +  
Sbjct: 47  ISQFSDLPITENTLKGLKESTFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLVPT 106

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L+   ++ +      AL I+PTRELAVQ+   L  +         +  GG  V  E+
Sbjct: 107 IESLI--RNKITEYDGLAALIISPTRELAVQIFEVLTKIGRNNSFSAGLVTGGKDVQYEK 164

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G+  S+L+ +VLDEAD  LD+GFR  I+ IL   P 
Sbjct: 165 ERVSRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPT 224

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAI 235
            R+ L+FSAT S ++  LA+    +  ++ ++S+    +     D   V V L ++ + +
Sbjct: 225 TRQTLLFSATQSESVKDLARLSLTNPKKIGVSSDQEISATPESLDQYYVKVPLDEKLDVL 284

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     +VF S+   V    +        +  +      ++ +     +     
Sbjct: 285 WSFIKSHLKSKILVFFSSSKQVQFAYETFRTLQPGISLMKLYGRHKQTARLETTKKFSQA 344

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR+ R GR+G S+  ++P   
Sbjct: 345 QHACLFATDIVARGLDFPAIDWVVQVDCPEDSATYVHRVGRSARFGRQGKSLLMLLPSEE 404

Query: 353 QRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
           +   +RL   +     +     S ++IR +      +DP+  +  Q         +  + 
Sbjct: 405 EGMLKRLKIHKIEPKFMNIKQKSKKSIRPQLQSLCFKDPVMKNLGQRAFIAYFKSIYIQK 464

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           D +      L              P   + G +  ++   A +
Sbjct: 465 DKDVFKVEELPAEAYAASLGLPGAPKIKIKGGESNKEKKNASR 507


>gi|195155931|ref|XP_002018854.1| GL26027 [Drosophila persimilis]
 gi|194115007|gb|EDW37050.1| GL26027 [Drosophila persimilis]
          Length = 578

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 100/356 (28%), Positives = 177/356 (49%), Gaps = 6/356 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K FE+  +  +I   +++ GY   T +Q+  +      +D++  AQTGSGKT AF L +
Sbjct: 161 IKKFEDAKLRDIIAANVTKSGYKLATPIQKVAIPVIAAGRDLMACAQTGSGKTAAFLLPI 220

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + LL +         P A+ ++PTRELA+Q+  E      ++ + +++  GG SV  + 
Sbjct: 221 LNLLLNDAVDLEIGK-PQAVIVSPTRELAIQIYHEARKFSHESYLKISILYGGTSVKYQN 279

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSS 176
             +  G H+++ TPGRL D +    +     + +V+DEAD MLD+GF + +  I    + 
Sbjct: 280 ESIMMGCHLLIATPGRLLDFVERAFITFDDTRFLVMDEADRMLDMGFSESMRKIVTHCTM 339

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             + + LMFSAT    I  +A  +  + + V I       SD+      V   ++    +
Sbjct: 340 RAQHQTLMFSATFPQEIQRMAGEFLNNYIFVTIGVVGGACSDVKQTIHEVTKYNKRRK-L 398

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +    A   IVF  T+         L+E      ++ G+  Q +R  AL+  + G+ +
Sbjct: 399 IDILKESADGTIVFVETKRGADFLASYLSEAEHPTTSIHGDRLQSQREQALRDFKTGKMK 458

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           V IAT VA+RG+D+ +++ V++ ++    ++ +HR GRTGR G  G +      + 
Sbjct: 459 VLIATSVASRGLDIKNVKHVVNYDMPKTIDDYVHRIGRTGRVGNNGRATSFFDPDQ 514


>gi|17507881|ref|NP_491681.1| Germ-Line Helicase family member (glh-3) [Caenorhabditis elegans]
 gi|10720000|sp|O01836|GLH3_CAEEL RecName: Full=ATP-dependent RNA helicase glh-3; AltName:
           Full=Germline helicase 3
 gi|2088766|gb|AAB57719.1| Germ-line helicase protein 3 [Caenorhabditis elegans]
 gi|3386542|gb|AAC28388.1| germline RNA helicase-3 [Caenorhabditis elegans]
          Length = 720

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/371 (27%), Positives = 163/371 (43%), Gaps = 23/371 (6%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  IPQ +   +   GY   T +Q+  L      KD+L  AQTGSGKT AF L + 
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM 357

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           S L+ E D    A     P  + + PTRELA Q+  E      ++ + +    GG++V  
Sbjct: 358 SRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGY 417

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-----DDIEF 171
            +  +  G  I+VGT GR+        + +   + +VLDEAD M+D           I +
Sbjct: 418 NKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMIDSMGFGPEIEQIINY 477

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-HSDIDYRAVLVALSD 230
                  KR+ +MFSAT   ++   A+   ++   +    +    +  +     L   + 
Sbjct: 478 KNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTS 537

Query: 231 R------------DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +            D            K  IVF + +        +++      + + G  
Sbjct: 538 KVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAR 597

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL++ R G   V IAT V  RG+D+  ++ VI+ ++ +N ++ +HR GRTGR 
Sbjct: 598 EQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRV 657

Query: 339 GRKGMSVFVIP 349
           G  G +   I 
Sbjct: 658 GNSGRATSFIS 668


>gi|114571726|ref|XP_001143546.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 3 [Pan
           troglodytes]
          Length = 619

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 192/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENVPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|239980958|ref|ZP_04703482.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291452821|ref|ZP_06592211.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291355770|gb|EFE82672.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 789

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 130/450 (28%), Positives = 217/450 (48%), Gaps = 22/450 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 79  LPEGVVRKLAQNGVTKPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASL---A 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 136 GGHTEKKKPRGVILTPTRELAMQVADALQPYGDVLGLRMKVVCGGTSMGNQIYALERGVD 195

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ +++  +LDEAD+M DLGF  ++  +LD  P+  + ++FS
Sbjct: 196 ILVATPGRLRDIINRGACSLENIEIAILDEADQMSDLGFMPEVTELLDQVPEGGQRMLFS 255

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I++L K Y K+ V   + +     + + +  ++V   D+    V          
Sbjct: 256 ATMENEISSLVKRYLKNPVSHEVDAAQGAVTTMSHHILIVKPRDKAP--VTGAIAARKGR 313

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 314 TIIFVRTQLGADRVAEQLRESGVKADALHGGMTQGARTRTLADFKDGHVNVLVATDVAAR 373

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 374 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 433

Query: 367 VVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                        P V  I    +   +Q     +S +  E+++ D+        + AA 
Sbjct: 434 ATRHIVGGSGVFDPEVAEITGARSLTEVQADSADNSAKQAEREVGDLTRQLERATRRAAE 493

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
                       EE   ++  + R+R  D 
Sbjct: 494 L----------REEAERLTARAARERGDDP 513


>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
          Length = 679

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 173/373 (46%), Gaps = 15/373 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + +   + +++  Y+  T VQ+  +   LR +D++  AQTGSGKT AF L +
Sbjct: 299 INSFDEAELYETFAKNVAKAKYLKPTPVQKYSIPIILRGRDLMSCAQTGSGKTAAFLLPV 358

Query: 59  ASTLLAEN---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++        FS A  P AL I PTRELA+Q+  E       T +   VC GG SV 
Sbjct: 359 LTGMIKSGLSGSSFSEAVEPQALVITPTRELALQIHHEALKFAYSTILRPVVCYGGTSVQ 418

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + R+L  G +++V TPGRL D +    + +  LK ++LDEAD MLD+GF  +I  ++ S
Sbjct: 419 HQLRELSRGCNLLVATPGRLLDFVGKGKVGLGKLKYLILDEADRMLDMGFEPEIRRLVAS 478

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA--------SENRQHSDIDYRAVLVA 227
                +    +   S       +    D +   I         +       +        
Sbjct: 479 PNMPSKEDRQTLMFSATFPEEIQKLAGDFLNDYIFLTVGRVGGTTPDIEQSVVQMESQFQ 538

Query: 228 LSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
             ++   I+  +       +  +VF  T+ S       L++  F   ++ G+  Q+ER  
Sbjct: 539 KKEKLMEILIDVISSFPGTEKVVVFVETKRSADFVASYLSQSGFPTTSIHGDRLQREREE 598

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL   + G   V +AT VAARG+D+P ++ V++ +L  N +  +HR GRTGR G  G +V
Sbjct: 599 ALSCFKRGETPVLVATSVAARGLDIPGVKHVVNFDLPDNIDEYVHRIGRTGRVGNIGKAV 658

Query: 346 FVIPQNMQRRAER 358
                +      R
Sbjct: 659 SFFDNDRDTALAR 671


>gi|281206327|gb|EFA80516.1| exocyst complex subunit 3 [Polysphondylium pallidum PN500]
          Length = 1349

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 107/390 (27%), Positives = 180/390 (46%), Gaps = 12/390 (3%)

Query: 4    FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE+      I   L    Y   T +Q       L  +D++  +QTGSGKT++F L     
Sbjct: 916  FEDMQFAPSITNILK-VNYEKPTPIQSIGWPVALSGRDMIGISQTGSGKTISFFLPAIQH 974

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +L++  +  P   P  L IAPTREL+VQ+  E +       +   V  GG S   + RDL
Sbjct: 975  ILSQPRQTGPYLGPQVLIIAPTRELSVQISHEAQPYLKAARLNSVVMFGGESKSHQIRDL 1034

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +    +V+GTPGR+ D ++   LN+  +   VLDEAD ML++GF D I  I ++    R+
Sbjct: 1035 KRCPQVVIGTPGRIIDIMKEGYLNLKRVSFFVLDEADRMLEMGFEDQIRAIFENIRPDRQ 1094

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----- 236
            +L ++AT    + TLA  +  + V+V + S     +    +  +V  S++D         
Sbjct: 1095 VLYWTATWPRKVQTLAHEFIVNPVKVQVGSTELTANPNIKQNFIVVDSEKDKVNALVDTL 1154

Query: 237  -NILRYHGAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
              I         I+F  T+    +    +      ++ ++ G+  Q  R   +   ++  
Sbjct: 1155 EKIFNERPEAKVIIFTMTKGGADKLAEHIGQIGNARIESIHGDKQQSRRIAIINGFKNNF 1214

Query: 295  ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
              + +ATDVA+RG+D+  +  VI+  + +  E+ +HR GRT RAG  G S  +I ++   
Sbjct: 1215 IDILVATDVASRGLDIRTITDVINFSMPTQIESYVHRIGRTARAGATGESHTIISKSSLN 1274

Query: 355  RAERL--FREANVSVVWEPAPSVEAIRERD 382
                +    E       E  P + A+  + 
Sbjct: 1275 DINLIPDLIELMTGANQEVPPVISALAPKR 1304


>gi|195437654|ref|XP_002066755.1| GK24389 [Drosophila willistoni]
 gi|194162840|gb|EDW77741.1| GK24389 [Drosophila willistoni]
          Length = 808

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I + +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 385 SGFPPEIIDIIDRVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 444

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 445 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 504

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 505 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 564

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  +  
Sbjct: 565 KPDTEEAEDESKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 624

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 625 ERTEQIVYMMGENDKRKKLMEILSRSIDPPIIIFVNQKKGADVLAKGLEKLGYNSCTLHG 684

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 685 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 744

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G+++  + ++       L
Sbjct: 745 RAGKNGVAISFVTKDDSSLFYDL 767


>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
          Length = 845

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 102/494 (20%), Positives = 184/494 (37%), Gaps = 35/494 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ ++G+   T +Q   +   +  KDV+  ++TGSGKT AF + +   L   +
Sbjct: 31  LDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKGRD 90

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG+  A  +GG  +  +   +     
Sbjct: 91  TK-----GIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHENPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL   I    L +  ++ VV DEAD + ++GF+D +   L   P+ R+ L+FS
Sbjct: 146 ILLATPGRLLHVIVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFS 205

Query: 187 ATISPA----------------------------ITTLAKNYQKDAVRVNIASENRQHSD 218
           AT+                               +        +    +++         
Sbjct: 206 ATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLALLHLCRIFEILKI 265

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
                        +    +       K  +VFC+T   V     +L         +  +L
Sbjct: 266 FQKFWKFGNFEKSEFRFFSRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQL 325

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
               R   +Q   + +  + + TDVAARG+D+P L+ VI+    S  +  +HR GR  RA
Sbjct: 326 DATARKQNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLYVHRVGRVARA 385

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           GR G ++ +I  +       LF      + +    S     E    R+    + L++   
Sbjct: 386 GRSGTAISLIANDELPYLTDLFMFLGKPIKFATDGSEYKEDETLIGRVPDSIVSLET--E 443

Query: 399 DEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
               + D      D  + A   +  +      P   +   +         +         
Sbjct: 444 FFNSIHDNNEEMIDLRQKATNAMMKYTRTRQPPSAESARRVKQDIRTDSVECAPHPFLKA 503

Query: 459 SRDNFKGSSWFSLS 472
             D         +S
Sbjct: 504 DGDKQSNDILNRIS 517


>gi|115473749|ref|NP_001060473.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|143456709|sp|Q5K5B6|RH57_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|22093706|dbj|BAC07000.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|23495827|dbj|BAC20037.1| putative ATP-dependent RNA helicase [Oryza sativa Japonica Group]
 gi|113612009|dbj|BAF22387.1| Os07g0647900 [Oryza sativa Japonica Group]
 gi|125601315|gb|EAZ40891.1| hypothetical protein OsJ_25369 [Oryza sativa Japonica Group]
          Length = 540

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/403 (25%), Positives = 188/403 (46%), Gaps = 22/403 (5%)

Query: 1   MKIFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +         +   LS+ G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 141 LENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAF 200

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   +     +        A+ + PTRELA Q  RE + L       + +    +S 
Sbjct: 201 LFPILMKI-----KPGSKEGVKAVILCPTRELAAQTTRECKKLAKGRKFYIKLMTKDLSK 255

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FIL 173
               +D+     I++ TP RL   ++ + L++S ++ +VLDE+D++ +LGF + I+  + 
Sbjct: 256 SGNFKDM--HCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVK 313

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRD 232
             S       +FSAT+  +I TLA+    DAVRV +  +N   S I  + +       + 
Sbjct: 314 ACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKL 373

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++       K LA    +   +  +L +++R +A+  +R 
Sbjct: 374 LALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRA 433

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IAT+V ARG+D   +  VI+ +   +    +HR GR+GRAGR G ++    +  
Sbjct: 434 GKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEED 493

Query: 353 QRRAERLFREANVSVVWE-PAPS-VEAI--RERDAQRILQDPL 391
           +     +   ANV +      PS ++A+   +R   R+ +DP+
Sbjct: 494 KPFLRNI---ANVLISSGCEVPSWIKALPKLKRKKHRVNRDPI 533


>gi|85085468|ref|XP_957516.1| hypothetical protein NCU04439 [Neurospora crassa OR74A]
 gi|74696212|sp|Q7RZ35|DBP4_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-4
 gi|28918608|gb|EAA28280.1| hypothetical protein NCU04439 [Neurospora crassa OR74A]
 gi|40882181|emb|CAF06007.1| probable putative RNA helicase HCA4 [Neurospora crassa]
          Length = 823

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/476 (24%), Positives = 202/476 (42%), Gaps = 13/476 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +     L    +  LT VQ A +   L+ +D+L +A+TGSGKT+AF + +   
Sbjct: 59  FSDLPLCEPTASGLRASHFEVLTDVQRAAIPLALKGQDILGAARTGSGKTLAFLVPVLEK 118

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R++      AL I+PTRELAVQ+   L  +         + IGG S+  E   L
Sbjct: 119 LY--RARWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHSFSAGLVIGGKSLKEEAERL 176

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +  G ++ +L+ +VLDEAD ++D+GF+  ++ +++  PK R+
Sbjct: 177 GRMNILVCTPGRMLQHLDQTAGFDVDNLQMLVLDEADRIMDMGFQQAVDALVEHLPKSRQ 236

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNIL 239
            L+FSAT S  ++ LA+   KD   V++       + +      ++  L ++ + +   L
Sbjct: 237 TLLFSATQSKRVSDLARLSLKDPEYVSVHEAAASATPVGLQQHYIVTPLPEKLDTLWGFL 296

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R +     IVF S+   V    +        +  L     Q++ +           +   
Sbjct: 297 RTNLKSKIIVFMSSGKQVRFVYESFKRMQPGIPLLHLHGRQKQIARLEITNRFTSAKYSC 356

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRA 356
             ATDV ARG+D P ++ VI  +   + +  +HR GRT R   KG +V  + P   +   
Sbjct: 357 LFATDVVARGVDFPAVDWVIQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEEGFL 416

Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +RL  ++  V  V       ++I+     +  Q P      Q      V  +  + D E 
Sbjct: 417 KRLEHKKVTVQKVNVKENKKKSIKNELQSQCFQSPDLKYLGQKAFVSYVRSIYLQKDKEV 476

Query: 416 IAAGFLRIH-RAGLCAPEEITPVSLVSGRD--RFRDDSRAFKVGGGSRDNFKGSSW 468
                L +   A          +    G D  + ++ SRA    G   +   G   
Sbjct: 477 FKFDKLDLDGFASSLGLPGTPQIRYQKGEDVKKLKNASRAAMSSGSDTEGSDGEIR 532


>gi|302524816|ref|ZP_07277158.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
 gi|302433711|gb|EFL05527.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
           AA4]
          Length = 511

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 184/368 (50%), Gaps = 5/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +  P+ + +AL+ +G      +Q A L   L  +DVL   +TGSGKT  F L +
Sbjct: 1   MTTFTELGLPKPLVDALAAQGVTEPFPIQAATLPHTLAGRDVLGRGRTGSGKTYGFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L A   R  P     AL +APTRELA Q+   +  L    G+      GGVS + + 
Sbjct: 61  LARLAAGPTRRRPGRP-RALILAPTRELATQIEAAIVPLARPLGLKATTIFGGVSANPQI 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++G  IVV  PGRL DH+R     +  ++  VLDEAD M DLGF  ++  I+ ++P+
Sbjct: 120 TRLRDGVDIVVACPGRLADHMRTGEAKLDKIEITVLDEADHMADLGFLPEVRRIMAATPE 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + L+FSAT+   I  LAK +  D +  ++ S     S + +  + +  + R   +V+ 
Sbjct: 180 RGQRLLFSATLDGGIDVLAKRFMNDPMLHSVDSAQSPVSTMTHHVLHLEETHRLPVLVD- 238

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    +VF  T+      T+ L       V L G L Q  R+  L+    G A+  
Sbjct: 239 -LTAAPGRTLVFTRTKHRAKALTRKLVASGVPAVELHGNLGQNARTRNLEAFSSGTAKTL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGI + D+ LVIHA+     +  LHRSGRT RAG  G  V ++          
Sbjct: 298 VATDIAARGIHVDDVTLVIHADPPVEHKAYLHRSGRTARAGASGTVVTLMTDEQVADVRA 357

Query: 359 LFREANVS 366
           L R+A +S
Sbjct: 358 LTRKAGIS 365


>gi|256076508|ref|XP_002574553.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238659762|emb|CAZ30786.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 463

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 174/381 (45%), Gaps = 21/381 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +   G+   + +Q+  +   +  +D++  AQ+G+GKT  F +     +L E 
Sbjct: 32  LKDNLLKGIYAYGFEKPSLIQQKTIKQIILGRDLIAQAQSGTGKTATFSIGTLQNILPEI 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG-GVSVHRERRDLQNGA 125
            +         L +APTRELAVQ+   +  L     +    C G   +  +  R+L  G 
Sbjct: 92  CQI------QVLVLAPTRELAVQIHHVMSSLSDYLSIRCVACCGGRNNTMQMARELDKGV 145

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ + +R   + ++ L+++VLDEADEML+ G  D +E I    P    +   
Sbjct: 146 HVVVGTPGRVLELLRQGNIRLNKLRSLVLDEADEMLNRGLHDQLEEIYRRLPSHTNLNNK 205

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQH-----------SDIDYRAVLVALSDRDNA 234
            +     +   A   ++        + N                  +   + +   +  A
Sbjct: 206 KSVNCQIVIISATMLKEHLELFQNLTSNPVCVLVPRDELSLSDLQQFYIDVGSEEWKFEA 265

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + ++         +VF +TR  V      L    F V A  G+L Q +R + ++  R G 
Sbjct: 266 LNDLFSSVCVSQTVVFVNTRRKVEWLASQLKREGFTVAAAHGDLDQSQRESVMKQFRSGE 325

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R+ I++D+ ARGID+  + LV++ +L  N    LHR GR+GR GR G++V  I    +R
Sbjct: 326 CRILISSDMWARGIDVQTVGLVVNFDLPMNTSEYLHRIGRSGRFGRTGLAVSFIANAEER 385

Query: 355 RAERLFREAN-VSVVWEPAPS 374
           +  +L    N   +   PAP+
Sbjct: 386 K--QLLEICNYYQIAIPPAPA 404


>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
 gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
 gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
 gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
          Length = 827

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 224

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 225 PKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  ++  +       L    N   
Sbjct: 345 IDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   L +I  D  +   + +         AG LR     
Sbjct: 405 N------------------IHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|307195490|gb|EFN77376.1| Probable ATP-dependent RNA helicase DDX49 [Harpegnathos saltator]
          Length = 444

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 118/443 (26%), Positives = 203/443 (45%), Gaps = 22/443 (4%)

Query: 21  VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80
              T++Q+  +   L  +D +  A+TGSGKT+AF L +   L  +           AL +
Sbjct: 2   KQPTAIQQNCIPRILGGEDCIGCAKTGSGKTLAFALPILQKLCEDP------YGIFALVL 55

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA Q+  +   +     +   V +GG+ +  +  +L    HIVV TPGRL DH+ 
Sbjct: 56  TPTRELAFQIADQFAAIGKAINLKKCVIVGGMDMMVQGLELSKRPHIVVATPGRLADHLD 115

Query: 141 GKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
                ++  +K +VLDEAD +L   F   ++ I  + P+++++L+FSAT++  +  +   
Sbjct: 116 SCNTFSLKRIKFLVLDEADRLLGGHFDKQLKTIFATLPEQKQVLLFSATMTNDLDNVKSV 175

Query: 200 --YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCST 253
              +         +      ++D R VL      D+ +V ++R   A N     +VF  T
Sbjct: 176 ASNKVFIWEEKDDAGIATVKELDQRYVLCPKDVLDSYLVEVIRTFCATNKNGSIMVFTDT 235

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
             +    +  L +  F  VAL   + Q+ER  AL   +    ++ IATDVAARG+D+ ++
Sbjct: 236 CKNCQLLSMALNDVGFTNVALHAMIKQKERLAALNKFKSNHVQILIATDVAARGLDIHEV 295

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           ELV++  + + P+  +HR GRT RAGR GM+V +I  +  +    +       +      
Sbjct: 296 ELVVNHVIPNVPKEYIHRVGRTARAGRNGMAVSLITPHDVKLLHAIEDAIGTKLTEYKVD 355

Query: 374 SVEAIRERDAQRIL--QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
             E +       +   +  + LD     EKKM++         +I A            P
Sbjct: 356 DKEIVTILTQISVAKREAEIKLDETDFFEKKMINKRKKLILEGEIDA-------DKYLIP 408

Query: 432 EEITPVSLVSGRDRFRDDSRAFK 454
           +E    + +  +D+ R   R  +
Sbjct: 409 DETDEENEIIDKDKKRMKDRHKR 431


>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
 gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
          Length = 827

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 224

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 225 PKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVESQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  ++  +       L    N   
Sbjct: 345 IDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   L +I  D  +   + +         AG LR     
Sbjct: 405 N------------------IHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|326942068|gb|AEA17964.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 411

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|227363253|ref|ZP_03847385.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|325682139|ref|ZP_08161657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
 gi|227071709|gb|EEI10000.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
 gi|324978783|gb|EGC15732.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           reuteri MM4-1A]
          Length = 467

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 113/461 (24%), Positives = 197/461 (42%), Gaps = 15/461 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   +  A+ +  +   T VQ+ ++   +  + V+  + TGSGKT AF L + 
Sbjct: 14  KKFADFQLQPYLLTAIQKINFRQPTPVQQRVIPVIMAGRSVVGQSATGSGKTHAFLLPIF 73

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S +  E+          A+   P+RELA Q+     +L         +     G    H+
Sbjct: 74  SKIKPEDQTV------QAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQ 127

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L+I   K  V+DEAD  LD+GF  +++ I    
Sbjct: 128 VDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTAKMFVVDEADMTLDMGFLHEVDQIASHF 187

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +M++FSATI   +    K Y ++ V   I +E   + D+D   +     DR+  I 
Sbjct: 188 PNDLQMMVFSATIPQKLRPFLKKYMENPVVEEIPTEAVINPDVDNWLMSTKGQDRNQLIY 247

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+    + T+ L     +V  + G L  + R   ++ +RD   +
Sbjct: 248 RLLTLGEPYLALVFANTKERAVKLTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQ 307

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR G KG ++ +         
Sbjct: 308 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLI 367

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ---GDEKKMVDVLLAKHDP 413
            +L  E  V  V +   + + +   D  R        + +        K     +     
Sbjct: 368 AKLE-ERGVKFVPKELKNGQLVTTHDRNRRKHYKRRQNELDPSMKGYVKKTKKKVKPGYK 426

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++I        +                 R +     R  +
Sbjct: 427 KRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR 467


>gi|189533973|ref|XP_001922220.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Danio rerio]
          Length = 864

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 103/414 (24%), Positives = 175/414 (42%), Gaps = 14/414 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +   + L E  Y   T +Q   +   L+ +DVL +A+TGSGKT+AF + +   
Sbjct: 72  FSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLEC 131

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E   ++      AL I+PTRELA Q    L  +         + IGG  +  E   +
Sbjct: 132 LYREQ--WTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKI 189

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+      L         + S L  +VLDEAD +LD+GF D +  I+++ PK R+
Sbjct: 190 HRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD   V +  + +  +        V+  L  + N + + L
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFL 309

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGRARV 297
           R H  K  IVF +    V    ++       +  L+    QQ+              + V
Sbjct: 310 RSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAV 369

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR GRT R    G ++ V+  + ++   
Sbjct: 370 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMI 429

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              +E  V +          +       + Q      + + ++K+        +
Sbjct: 430 SQLQEKKVPINKI------QVNPEKLMSVQQKLEAFLAQEKEQKERAQRCFVSY 477


>gi|68071817|ref|XP_677822.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498080|emb|CAH95521.1| RNA helicase, putative [Plasmodium berghei]
          Length = 499

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 195/370 (52%), Gaps = 10/370 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   NI + I +++ E G+   T +Q+ +L    +++D++  ++TGSGKT  F + +
Sbjct: 92  ITSFSQLNICEEILQSIQELGWEKPTLIQQKVLPLMFQKRDIIGLSETGSGKTACFIIPI 151

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   F       AL I+PTREL +Q+ +  + L +   + +    GGV +  + 
Sbjct: 152 LQELKLKKQNF------FALIISPTRELCIQIAQNAQALGSNLLINICTIFGGVDIVTQS 205

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +L    +I++ TPGR+ DH+      N+ +LK +V DEAD++L L F   I  +L   P
Sbjct: 206 LNLAKKPNIIISTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFESSINKLLLILP 265

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R   +FSAT++ ++  L K   K+ +++ ++++      +    + + L  +   + +
Sbjct: 266 KNRITFLFSATMTKSVAKLKKTSLKNPIKIEVSNKYSTVKTLIENYIFLPLKYKYTYLCS 325

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +  Y+  KN I+F +T A+  +          + + L G+L+Q +R ++L + +  +  +
Sbjct: 326 LCFYYTNKNIIIFSNTCATAQKLNFFCRNLGLKSICLHGKLTQNQRLSSLNLFKTNKYNI 385

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            I+T V ARG+DL ++++VI+ +L  + +  +HR GRT RAG+ G S+  + Q       
Sbjct: 386 LISTQVGARGLDLQNIKIVINFDL-CSCKEYIHRVGRTARAGKTGKSITFVTQYDVETFL 444

Query: 358 RLFREANVSV 367
            + ++ N  +
Sbjct: 445 TIEKQLNKKI 454


>gi|307189121|gb|EFN73577.1| Probable ATP-dependent RNA helicase DDX10 [Camponotus floridanus]
          Length = 791

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/399 (26%), Positives = 184/399 (46%), Gaps = 10/399 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  ++  + L E  Y+++T +Q   +   L+  D+L +A+TGSGKT+AF + +   
Sbjct: 40  FSDLPLSRITLKGLVENNYIDMTDIQRQSIGLALQGNDILGAAKTGSGKTLAFLIPVLEI 99

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +   ++      AL I PTRELA Q+   L  +     V   + IGG  +  ER+ +
Sbjct: 100 LYCKQ--WTRLDGVGALIITPTRELAYQIYETLRKVGRYHDVSAGLIIGGKDLKFERKRM 157

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L         +  +++ +VLDEAD  LD+GF   +  I+ + P KR+
Sbjct: 158 DQCNVVICTPGRLLQHMDENPLFDCVNMQILVLDEADRCLDMGFEKTMNCIIANLPPKRQ 217

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++             V V+  S +    ++    ++ +L D+   + + +
Sbjct: 218 TLLFSATQTKSVKDLARLSLKDPLYVSVHEYSTHTTPENLQQNYIVCSLEDKMAMLWSFI 277

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRARV 297
           R H  +  IVF S+   V    +V       V   AL G L Q +R +  +     +  V
Sbjct: 278 RNHLKQKIIVFFSSCKQVKYIYEVFCRLRPGVSLLALYGTLHQMKRMSIYESFCKKQYAV 337

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR+GRT R    G S+ V+  + +   E
Sbjct: 338 LFATDIAARGLDFPAVNWVLQMDCPEDVNAYIHRAGRTARFQSGGESLLVLLPSEEGIIE 397

Query: 358 RLFREANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDS 395
           +L ++  + +      PS      R  + +L   + L  
Sbjct: 398 KL-KQCKIPINMIRINPSKLQSPHRKLEALLAQNIALKE 435


>gi|156094360|ref|XP_001613217.1| ATP-dependent helicase [Plasmodium vivax SaI-1]
 gi|148802091|gb|EDL43490.1| ATP-dependent helicase, putative [Plasmodium vivax]
          Length = 720

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 127/565 (22%), Positives = 234/565 (41%), Gaps = 63/565 (11%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P++   I + LS +G   +T +Q     P    +D++  ++TGSGKT+AF L L  
Sbjct: 127 FADVPEINPNIAKFLSSKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 186

Query: 61  TLL-----AENDRFSPASA-------------------PLALAIAPTRELAVQVGRELEW 96
            L         +  SP++                    P  L + PTREL+ QV    + 
Sbjct: 187 KLYKVKMGRSGEGVSPSTPHLESANHFGGTNQPDDSKNPSILVLEPTRELSKQVENTFKE 246

Query: 97  LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
           +       +    GG S   +   L+ G  I+ GTPGR+ DH+  K L++ ++K +VLDE
Sbjct: 247 ISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLERKNLSLQNIKYLVLDE 306

Query: 157 ADEMLDLGFRDDIEFI--LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           ADEML+LGF  D+E I    +  + + +L  + T S      +K  +       + S N+
Sbjct: 307 ADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWIKDISSKYMKNPFFIDVVDSSNK 366

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
              +I + A+      ++ A++              I+F  T+          +      
Sbjct: 367 TSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLSF 426

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
             L G ++Q  R + +Q  R G  ++ IATD+AARG+D+ +++LVI     +  E  +HR
Sbjct: 427 AVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIHR 486

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI-------RERDAQ 384
           +GRTGRA +KG+SV +     ++   ++ +   +    E  P+ E +         +  Q
Sbjct: 487 AGRTGRANKKGISVVLFSTEDKQDLVKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKIQ 546

Query: 385 RILQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
            +  +P  L        ++++     + D  ++ A  L I    +   E I   SL++G 
Sbjct: 547 NV--NPSVLPFFHKTASELIEKCTQLQMDQTELVARCLAI----ISKKEHIKKRSLINGL 600

Query: 444 DRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ-KAEARWLMPMLCRSSGINRQSIGAI 502
                 S   K         +    + ++  S          +  +             I
Sbjct: 601 SETLTLSFVNKSRKW---KNEDDIIYWVNKISNDLNVNTFNKILQI------------KI 645

Query: 503 RVQPDL-TFVEVSADGVDLLRRTVK 526
             +    ++ +++ +  +L  +   
Sbjct: 646 DTRDRFSSYFDLNENIAELFIQNFN 670


>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 441

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 193/443 (43%), Gaps = 36/443 (8%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ I +   E G    T+VQ+A +   +   + +V +QTG+GKT AF L + ST
Sbjct: 5   FTSLGCPEFIYQTCKEIGISKPTAVQQACVKQIITGHNCIVISQTGTGKTAAFALPIIST 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +           AL I+PTRELA Q+ ++ +         +   IGG+++  +   L
Sbjct: 65  LSKDP------YGIYALVISPTRELAQQICQQFKIFGRGMNADICPIIGGLAITDQASAL 118

Query: 122 QNGAHIVVGTPGRLCDH-----IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   HIVV TPGR+  H           +  +L+ +VLDE D +   G+ DD+  I+   
Sbjct: 119 EKNPHIVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDRLFKDGYWDDVLEIIKYL 178

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNI-----ASENRQHSDIDYRAVLVALSDR 231
           P+KR+ L FSAT S  +  L    +  +           S         Y      L  +
Sbjct: 179 PEKRQTLCFSATKSDQVDLLTIMTKPPSTSSCPLPSVGKSWFSDDKLTFYWEPTDDLKPK 238

Query: 232 DNA-----------------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
                               I  ++     K  IVF ST+ +    T +L    ++   +
Sbjct: 239 IEHVKVLVQDEGREVYLMIIIQKLMEADLYKQVIVFASTKEAAQTITLILRNFSYKTAVM 298

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
             ++ + ER   L+  R GR R+ +ATDVAARG+D+P ++ VIH     N    +HR+GR
Sbjct: 299 HSDMQESERLKELEEFRAGRQRILVATDVAARGLDIPFVDNVIHFNPPQNAATYVHRAGR 358

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD-PLFL 393
           TGRAGR+G S+  +    ++  + + +E             E   + +     +D  + +
Sbjct: 359 TGRAGREGRSILFVSGREKKIEQEIEKEIGQQFTELKVEKSEMKEKMNVFWAKKDAKIAM 418

Query: 394 DSIQGDEKKMVDVLLAKHDPEKI 416
                 ++  +   L K    ++
Sbjct: 419 SQSDFGKRDEMLKQLDKIQAGEV 441


>gi|121595996|ref|YP_987892.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
           JS42]
 gi|120608076|gb|ABM43816.1| ATP-dependent RNA helicase DbpA [Acidovorax sp. JS42]
          Length = 469

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 130/375 (34%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L + GY  +T +Q A L   L+ +D++  A TGSGKT AFGLA+   
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L   N R+    A   L + PTRELA QV  E+  L   +  + V    GGV    +   
Sbjct: 76  L---NPRW---FAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIAS 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAHIVVGTPGR+ D +    L+I++LK +VLDEAD MLD+GF  DIE ++   P +R
Sbjct: 130 LENGAHIVVGTPGRVMDLMERGKLDIANLKTLVLDEADRMLDMGFLADIETVVRQCPAER 189

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA+ + +    V +A+++           + A   + + +  +L 
Sbjct: 190 QTLLFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWYEVDARE-KVDVVARMLA 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    ++I FC+T+         L    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++  +      R+ 
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGRIE 368

Query: 361 REANVSVVWEPAPSV 375
                +  + P   +
Sbjct: 369 LLQGRACEFFPVDEL 383



 Score = 44.2 bits (102), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSSWFS 470
           D E +A   + +   G      +  + L+ GR   F          GG            
Sbjct: 347 DAEGLALNLVSMDEMG-----SVGRIELLQGRACEFFPVDELTPTAGGELRP--PMCTIQ 399

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           +  G ++K  A  +M  +C   G  R+ IG I V    T+V V     
Sbjct: 400 IIGGRREKIRAGDVMGAMCADFGYAREQIGKISVNDFSTYVAVDRAIA 447


>gi|212540616|ref|XP_002150463.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
 gi|210067762|gb|EEA21854.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
          Length = 808

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 189/418 (45%), Gaps = 37/418 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + + + + GY + T +Q A +   L+ +D++  A TGSGKT +F L L
Sbjct: 367 MRSWEESGLPRRLLDLIKQVGYADPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL 426

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +         V   +GG S+
Sbjct: 427 LVYIAELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSL 486

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GA I++ TPGRL D +  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 487 EEQAYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 546

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------- 226
           + P                 +     +    R  +       S ++  A           
Sbjct: 547 ALPVTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVT 606

Query: 227 --------------------ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
                                   +      ++        IVF + + +     K + +
Sbjct: 607 IGNVGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQ 666

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F  V L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E
Sbjct: 667 MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 726

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           +  HR GRTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 727 SYTHRIGRTGRAGKSGVAITFLGNEDTDVMYDLKQMLMKSSISRVPEELRKHEAAQSK 784


>gi|315640866|ref|ZP_07895965.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
 gi|315483405|gb|EFU73902.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           italicus DSM 15952]
          Length = 449

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/380 (28%), Positives = 185/380 (48%), Gaps = 10/380 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL+++G+V+ T VQE ++    + K ++  +QTGSGKT  F L L   +  E + 
Sbjct: 10  PYIQTALADKGFVHPTEVQEKLIPIISKGKSLIGQSQTGSGKTHTFLLPLFDKVQPEKNE 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQNGA 125
                    +  AP+RELA Q+ +E + L + +   + V           +  R      
Sbjct: 70  V------QVVICAPSRELASQIYQEAKQLASFSETEIRVMNFVGGTDKKRQVDRIANQQP 123

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +V+GTPGR+ D I  + L I    A V+DEAD  LD+GF  +++ I     +  + L+F
Sbjct: 124 QVVIGTPGRILDMINEQALQIHTAFAFVVDEADMALDMGFLPEVDQIAAKFSEDIQFLVF 183

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATI   +    K Y ++ V   IAS+      ID   +     +  + +  +L      
Sbjct: 184 SATIPEKLRPFLKKYMQNPVIEEIASKTVISDSIDNWLISTKGKNTSHLVYQLLTVGHPY 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            AIVF +T+  V+     L E   +V  + G++S +ER   ++ +++   +  +ATD+AA
Sbjct: 244 LAIVFANTKQRVNEIANYLKEQDLKVATIHGDISPRERKRVMKQVQNMEFQYVVATDLAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  +  VI+AE+  + +  +HR GRTGR    G+++ +   + + + E +     +
Sbjct: 304 RGIDIEGVSHVINAEIPDDLDFFIHRVGRTGRNQLSGIAITLYDPSQEPQIEAIE-ALGI 362

Query: 366 SVVWEPAPSVEAIRERDAQR 385
           S   +   + E I   D  R
Sbjct: 363 SFEPKEIKNGEIISTYDRNR 382


>gi|299746292|ref|XP_001837876.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
 gi|298406988|gb|EAU83976.2| ATP-dependent RNA helicase dbp-4 [Coprinopsis cinerea okayama7#130]
          Length = 816

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 176/391 (45%), Gaps = 16/391 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +     L +  +V +T +Q   +   L+ KDVL +A+TGSGKT+AF + +   
Sbjct: 55  FADLPISEQTKRGLKKASFVKMTDIQAKSIPLSLKGKDVLGAARTGSGKTLAFLIPVLEV 114

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++ P     AL I+PTRELAVQ+   L  +         + IGG ++  ER  L
Sbjct: 115 LY--RRKWGPTDGLGALIISPTRELAVQIFEVLRAIGPFHSFSAGLVIGGKNLKDERDRL 172

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +V      L    +  G +  +L+ +VLDEAD +LD+GF+  +  +L   PK R+
Sbjct: 173 SRMNILVATPGRLLQHMDQTVGFDTDNLQMLVLDEADRILDMGFQRTLSALLSHLPKSRQ 232

Query: 182 MLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            L+FSAT + ++        K+ +   V+   +S +     ++   V+  L  + + + +
Sbjct: 233 TLLFSATQTESVSDLARLSLKDPEYVGVKEAGSSGSYIPDSLEQHYVITELDKKLDVLWS 292

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            ++ H     +VF S+   V    +   +    V  L     Q++ +             
Sbjct: 293 FIKTHLQSKVLVFLSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQTARLAMYTKFTSHSH 352

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  ATD+AARG+D P ++ V+  +   + E  +HR GRT R   KG  +  +  + +  
Sbjct: 353 AVMFATDIAARGLDFPAVDWVVQVDAPEDAETYIHRVGRTARYESKGKGLLFLCPSEEEG 412

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRI 386
                 +  ++V          IR+   Q I
Sbjct: 413 MTSALTKKGLTVQKIK------IRQSKTQNI 437


>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
 gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
          Length = 827

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 224

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 225 PKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVESQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  ++  +       L    N   
Sbjct: 345 IDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   L +I  D  +   + +         AG LR     
Sbjct: 405 N------------------IHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|312866296|ref|ZP_07726514.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
 gi|311097990|gb|EFQ56216.1| DEAD-box ATP-dependent RNA helicase CshB [Streptococcus downei
           F0415]
          Length = 446

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 25/414 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N    I  AL    +   T VQ  ++      +D++  ++TGSGKT  F L +   L   
Sbjct: 6   NFKDYINRALDLMSFKEPTPVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLQEN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQ 122
                  +   A+  AP+RELA Q+ +  + +  +    + +         + +  +   
Sbjct: 66  ------LNQVQAVITAPSRELASQIYQAAKQIADQAETEIRLVNYVGGTDKLRQIEKLKA 119

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               I++GTPGR+ D I+   L+I      V+DEAD  +D+GF D ++ I  S P+  ++
Sbjct: 120 GQPQIIIGTPGRIYDLIKSSHLDIHKASTFVVDEADMTMDMGFLDTVDKIAASLPETVQI 179

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSATI   +    K Y  + V   I ++      ID   +     D+++ I+ IL   
Sbjct: 180 LVFSATIPQKLQPFLKKYLTNPVIEKIKTQTVIADTIDNWLLSTKGRDKNSQILEILTSL 239

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A++F +T+         L  +  +V  + G +  +ER   +  ++       +ATD
Sbjct: 240 HPYLAMIFVNTKERADELHNFLLANGLKVAKIHGGIPPRERKRIMNQIKRLDYEYIVATD 299

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +       L + 
Sbjct: 300 LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEK- 358

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
             +S +                ++ +D  F D+   D +   +    K D E I
Sbjct: 359 LGISFLP---------------KVFKDGQFQDTYDRDRRANREKSYQKLDTEMI 397


>gi|302535427|ref|ZP_07287769.1| DEAD-box RNA helicase [Streptomyces sp. C]
 gi|302444322|gb|EFL16138.1| DEAD-box RNA helicase [Streptomyces sp. C]
          Length = 508

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 122/376 (32%), Positives = 189/376 (50%), Gaps = 5/376 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 82  DMPAELLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR--TA 139

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +   +GG+S+ R+   L+ GA
Sbjct: 140 GLRAEPRQ-PLALILVPTRELAQQVTDALTPYARAVKLRLTTVVGGMSIGRQAGALRGGA 198

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    + + ++F
Sbjct: 199 EVVVATPGRLKDLIDRGECRLNQVAITVLDEADQMTDMGFMPQVTALLDQVRPEGQRMLF 258

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 259 SATLDRNVDLLVRRYLIDPVVHSVDPTAGAVTTMEHHVLHVHGADKQRTTTE--IAAREG 316

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 317 RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAA 376

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +  ++P++ LHR GRT RAG  G  V ++  N +R   RL + A +
Sbjct: 377 RGIHVDSLDLVVNVDPPTDPKDYLHRGGRTARAGESGSVVTLVTPNQRREMTRLMQAAGI 436

Query: 366 SVVWEPAPSVEAIRER 381
           +       S E    R
Sbjct: 437 TPQTTQVRSGEEALNR 452


>gi|289621648|emb|CBI52431.1| unnamed protein product [Sordaria macrospora]
          Length = 730

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 194/425 (45%), Gaps = 36/425 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++   +P+ + + +   GY   T +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 294 MRSWDESTLPRRLLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL 353

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +  L     ++    P AL +APTREL  Q+  E +      G  V   +GG S+  
Sbjct: 354 LVYISELPPLTEYNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEE 413

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+NGA I+V TPGRL D +  + L  S     ++DEAD M+D GF + +  ILD+ 
Sbjct: 414 QAYALRNGAEIIVATPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAM 473

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---------------- 220
           P            +P + +   + +    +  + +                         
Sbjct: 474 PVTNEKPDTDDAENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRRPAIVTIGN 533

Query: 221 ---------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                     R   VA  D+    +  +          IVF + + +     + +    F
Sbjct: 534 AGEAVDTVEQRVEFVAGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKHMGF 593

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R+G+  + +ATD+A RGID+PD+ LV++  +++N E+  
Sbjct: 594 SAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYT 653

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER--DAQ 384
           HR GRTGRAG+ G+++  +            ++  ++++S V +     EA + +    Q
Sbjct: 654 HRIGRTGRAGKSGVAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQNKPQKGQ 713

Query: 385 RILQD 389
           + L++
Sbjct: 714 KKLEE 718


>gi|294655023|ref|XP_457109.2| DEHA2B03322p [Debaryomyces hansenii CBS767]
 gi|218512020|sp|Q6BXG0|DBP4_DEBHA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|199429633|emb|CAG85100.2| DEHA2B03322p [Debaryomyces hansenii]
          Length = 766

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 103/423 (24%), Positives = 187/423 (44%), Gaps = 11/423 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P  +     L E  + +LT +Q+  +   L+ +DV+ +A+TGSGKT+AF +  
Sbjct: 45  ISQFSDLPISEETARGLKEASFASLTDIQKKTIPISLKGEDVMGTAKTGSGKTLAFLIPT 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +L+   ++ +      AL I+PTRELAVQ+   L  +         +  GG  V  E+
Sbjct: 105 IESLI--RNKITEYDGLAALIISPTRELAVQIFEVLVKIGKHNNFSAGLVTGGKDVKYEK 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V              G+  S+L+ +VLDEAD  LD+GF+  I+ IL   P 
Sbjct: 163 ERVSKMNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPP 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAI 235
            R+ L+FSAT S ++  LA+    +  RV I+S+         ++   + + L ++ + +
Sbjct: 223 TRQTLLFSATQSDSVKDLARLSLANPKRVGISSDQELSATPESLEQYYIKIPLDEKLDVL 282

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDG 293
            + ++ H     +VF S+   V    +        +  L      ++ S           
Sbjct: 283 WSFIKSHLKSKILVFFSSSKQVQYAYETFRTLQPGISLLKLYGRHKQTSRMETTMKFSQA 342

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR G S+  ++P   
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQIDCPEDAATYVHRVGRAARFGRAGKSLMMLLPSEE 402

Query: 353 QRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               +RL   +  +  +     + + IR +      QDP+  +  Q         +  + 
Sbjct: 403 NGMLKRLNNNKIELKFMNIKQKNKKTIRPQLQSLCFQDPMIKNLGQRAFISYFRSVYVQK 462

Query: 412 DPE 414
           D +
Sbjct: 463 DKD 465


>gi|194017773|ref|ZP_03056383.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
 gi|194010673|gb|EDW20245.1| dead/deah box helicase domain protein [Bacillus pumilus ATCC 7061]
          Length = 439

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 192/388 (49%), Gaps = 14/388 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I +A+ E G+   T +Q+ I+   L+ + V+  +QTG+GKT A+ L L  ++   
Sbjct: 10  ELKSFIIDAIHELGFYEPTDIQKRIIPAVLKGESVIGQSQTGTGKTHAYLLPLIHSIDPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+ +E + +  K          + IGG    +  + L
Sbjct: 70  KEHV------QVVITAPTRELANQIFKEAQTILKKASPEEEIKAKLYIGGTDKQKSIQKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N  H+VVGTPGR+ D I  + LN+    ++V+DEAD MLD+GF +D++ I    P++ +
Sbjct: 124 KNQPHLVVGTPGRIADLIHEQALNVYKATSLVIDEADLMLDMGFLEDVDRIGSQMPEQLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y  +    ++  +     +I +  V     D+   +  ++  
Sbjct: 184 MLVFSATIPEKLKPFLKKYMDNPKYAHVEPKRITAENIQHILVPSKQRDKLKLLHEMVTN 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F +T+ +V      L E   +V  L G L+ +ER   ++ + D      +A+
Sbjct: 244 VQPYLGIIFANTKTTVDEIASFLQEKGMKVGVLHGGLTPRERKKVMKQIDDLEFTYIVAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G+++ +     +    ++ +
Sbjct: 304 DLAARGIDIKGVSHVINYELPSDLDFYVHRVGRTARAGSSGIAMTIYELADEDALIQIEK 363

Query: 362 E----ANVSVVWEPAPSVEAIRERDAQR 385
                 N ++V       +   +R  ++
Sbjct: 364 MGVVFENKTIVHGEWRDADDRLKRQRRK 391


>gi|91199667|emb|CAI78022.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|96771714|emb|CAI78296.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|117164259|emb|CAJ87801.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
 gi|126347371|emb|CAJ89079.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens ATCC
           23877]
          Length = 499

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 185/364 (50%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 71  FADLDMPRELLAALGSQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 131 ---TAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASAL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 188 RGGAEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQ 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 248 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTEIA 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   +DG   V +AT
Sbjct: 306 ARDGRVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  
Sbjct: 366 NVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMTRLMA 425

Query: 362 EANV 365
            A +
Sbjct: 426 TAGI 429


>gi|332258725|ref|XP_003278445.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Nomascus
           leucogenys]
          Length = 598

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 221 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 275

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 276 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 335

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 336 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 395

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 396 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 455

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 456 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 515

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 516 TEDDKPLLRSVANVIQQAGCPVPE 539


>gi|71656970|ref|XP_817024.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882190|gb|EAN95173.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 798

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++     +   +++ GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 344 VESFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPV 403

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+A+ +APTRELA+Q+  E+  L  +T +   V  GG     
Sbjct: 404 VHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPT 463

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----- 171
              +      I+V  PGRL D      ++ S +K +VLDEAD ML++GF + IE+     
Sbjct: 464 RFEN-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASR 518

Query: 172 --ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              +  + +++ ++  +      +    +  ++    + +        +I  + V V  S
Sbjct: 519 YTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQES 578

Query: 230 DRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ +     I +       ++F  T+ +       L         + G+  Q +R  AL+
Sbjct: 579 EKMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALR 638

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +DG   + +ATDVA+RG+D+P++  VI  +L    ++  HR GRTGRAG KG +    
Sbjct: 639 DFKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFY 698

Query: 349 PQNMQRRAERLFREANVSVVWEPA 372
            +N +     L+          P 
Sbjct: 699 NKNNRNLTVDLYNYLKEHEQDIPL 722


>gi|269955581|ref|YP_003325370.1| DEAD/DEAH box helicase domain-containing protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304262|gb|ACZ29812.1| DEAD/DEAH box helicase domain protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 605

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 125/374 (33%), Positives = 191/374 (51%), Gaps = 9/374 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-- 66
           Q I +AL++ G  +   +Q   L   L+  D++  A+TG+GKT+ FG+ L + ++A    
Sbjct: 77  QEIVDALTDVGITHPFPIQAMTLPVALQAHDIIGQAKTGTGKTLGFGIPLLNRVVAPGEP 136

Query: 67  --DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQN 123
             D       P A+ +APTRELAVQV  +L    A    +  +   GG +   +   LQ 
Sbjct: 137 GWDELVAPGKPQAVVVAPTRELAVQVAGDLATASAHRPSLRVIQIYGGRAYEPQIEQLQR 196

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           GA +VVGTPGR+ D +    LN+   + +VLDEADEMLDLGF  D+E IL   P KR  +
Sbjct: 197 GAEVVVGTPGRMVDLLNQGHLNLLRAETIVLDEADEMLDLGFLPDVEKILSRLPAKRHTM 256

Query: 184 MFSATIS---PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +FSAT+     ++     +        +   E     +I          D+   +  +L+
Sbjct: 257 LFSATMPGAVVSMARRYMSQPTHIRAADPDDEGVTVKNIKQVVYRAHALDKIEVLARLLQ 316

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   +IVF  T+ + ++ +  L +  F   A+ G+L Q  R  AL+ +R G+  V +A
Sbjct: 317 AEGRGRSIVFARTKRTAAKVSDELRDRGFAAGAIHGDLGQGAREQALRALRHGKIDVLVA 376

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  V++ +   +    LHR GRTGRAG KG +V  +  +   R   L 
Sbjct: 377 TDVAARGIDVDDVTHVVNYQCPEDERTYLHRVGRTGRAGNKGTAVTFVDWDDMPR-WSLI 435

Query: 361 REANVSVVWEPAPS 374
            +A  +   EP  +
Sbjct: 436 DKALETGHPEPVET 449


>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 455

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 186/367 (50%), Gaps = 4/367 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   Q I +AL+ +  V+  ++Q   L   L  +D++  A+TG GKT+ FG+ +  
Sbjct: 9   TFTELGVAQEITDALAAQSIVDTFAIQALTLPIALEGRDLIGQARTGMGKTLGFGVPVLD 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  + D       P AL + PTREL VQVG +L        V V    GG     + + 
Sbjct: 69  RIFDDADIEELDGTPRALIVVPTRELCVQVGEDLTRAAVNLPVRVTTIYGGTPYEEQEKA 128

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++G  +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF   IE I+     + 
Sbjct: 129 LKDGTDLVVGTPGRLIDLYNRGELRLGTVRILVLDEADEMLDLGFLPAIEKIIAGITAEH 188

Query: 181 RMLMFSATISPAI--TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSAT+  AI         +   +R  ++ E   ++            D+   I  +
Sbjct: 189 QTMLFSATMPDAILGLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRV 248

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    I+F  T+ S +   + LA   FQV ++ G++SQ  R  +LQ  RDG   + 
Sbjct: 249 LQARGRGRTIIFVRTKRSAAEVARDLAGAGFQVASVHGDMSQSARERSLQGFRDGVVDIL 308

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGID+ D+  VI+ +   +    +HR GRTGRAG  G +V ++  +   + + 
Sbjct: 309 VATDVAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDELPKWKL 368

Query: 359 LFREANV 365
           +  E  +
Sbjct: 369 INDELGL 375


>gi|224000281|ref|XP_002289813.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975021|gb|EED93350.1| RNA helicase [Thalassiosira pseudonana CCMP1335]
          Length = 466

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 131/431 (30%), Positives = 189/431 (43%), Gaps = 24/431 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND------- 67
           LS +G  + T VQ   ++P L  +DV+  ++TG+GKT+AFG+   + ++           
Sbjct: 1   LSHKGITHFTPVQAKAMSPVLAGRDVIGRSRTGTGKTLAFGMPALTRMVERAKEKGNLEQ 60

Query: 68  ------RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R      P  + + PTRELA QV  EL  +    G+  +   GGVS   + R L
Sbjct: 61  GRDGSTRMRKGRLPSMIVLCPTRELARQVEDELSAVCKPLGLFSSCFHGGVSYDPQARAL 120

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  ++VGTPGR+ DHI    L++S    VVLDEADEML++GF +D+E IL+    K R
Sbjct: 121 RQGVDVIVGTPGRVIDHIDRGNLDLSECDTVVLDEADEMLNMGFAEDVEVILEGVGSKNR 180

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVN-------IASENRQHSDIDYRAVLVALSDRDNA 234
                   S       K       R           + +R  S + + A+ V        
Sbjct: 181 EKTQCLLFSATTPPWVKEIGSHYQRDVLSIDITGEQTGSRVASTVRHTAIQVPFGADAKK 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           IVF  T+                  A+ G++ Q++R   L   R G 
Sbjct: 241 AILEDIIALFGKTIVFTETKKEADELVSGSVFKTLSAQAIHGDIGQKQRDATLAAFRAGA 300

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATDVAARGID+ D++LVI  E   + +  +HRSGRTGRAG  G+SV +  QN  R
Sbjct: 301 FNVLVATDVAARGIDIKDVDLVIQFEPPRDVDTYVHRSGRTGRAGASGISVLLFQQNQAR 360

Query: 355 RAERLFREANVSVVWE---PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              R+ +       +E   P  +  A+        L      D      K     LLA  
Sbjct: 361 DIVRIEKSLGHGFKFELLGPPSTEAALNAAAKTSALACRGVADETAAHFKDAAVSLLASS 420

Query: 412 -DPEKIAAGFL 421
             PE + A  L
Sbjct: 421 GSPEDVVARCL 431


>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 525

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 120/400 (30%), Positives = 199/400 (49%), Gaps = 8/400 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     +   L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L  
Sbjct: 34  TFASLGVDSDLAADLDSRGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+ D+  P   P+ L +APTRELA+Q+   +E L     + V    GGVS   + + 
Sbjct: 94  RL-AQQDKARPG-HPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKA 151

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV  PGRL D +    +++  ++  VLDEAD M DLGF  ++  IL ++P++ 
Sbjct: 152 LKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRG 211

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   +  L   +    ++ ++         + +R  +VA     + +V  L 
Sbjct: 212 QRMLFSATLDNGVDALVAEFLHKPLQHSVDPLTSPVDAMTHRVWMVADKTAKDGVVRRLA 271

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  + F  T+    R  + L +     V L G +SQ  R  A++    G+  V +A
Sbjct: 272 SGEGQRIL-FTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERAMKAFSTGQVHVMVA 330

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L 
Sbjct: 331 TDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLL 390

Query: 361 REANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGD 399
           +++ +    E   P  +A+     Q  + DP+ L+ +   
Sbjct: 391 KKSRIRADVERIRPDDDAVAVLVGQ--VADPVALEDMPEG 428


>gi|167896715|ref|ZP_02484117.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei 7894]
          Length = 435

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 128/356 (35%), Positives = 188/356 (52%), Gaps = 8/356 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L   D++  A+TGSGKT AF LAL + L       +      AL + P
Sbjct: 1   MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD------ARRFDVQALVLCP 54

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L   +  V V    GG  +  + + L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +   RV +   +        R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 175 RHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F V+AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHVLALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   ++A
Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 348 KAGGDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 407

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 408 RGIARDALRKLNAGKIKGKRVKVRLMD 434


>gi|159490042|ref|XP_001702998.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270905|gb|EDO96736.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 485

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 173/381 (45%), Gaps = 13/381 (3%)

Query: 1   MK--IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   F++      +  A+  +GY   T +Q   +   ++  DV+  A+TGSGKT AF L
Sbjct: 7   MKAGTFDSMGFSPDVLRAIKRKGYRLPTPIQRRAMPMIMQGLDVVGMARTGSGKTAAFVL 66

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L   + R        A+ ++PTRELA+Q  + +  L   T +  A  +GG S+  
Sbjct: 67  PMIHRLKEHSIRA----GARAVILSPTRELALQTHKTVRDLCKYTSLRTACLVGGDSMEV 122

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +L     ++V TPGRL  H+          ++  V DEAD M ++GF   +  +L  
Sbjct: 123 QFAELAANPDVIVATPGRLAHHLEEVEGLSLRAVEYCVCDEADRMFEMGFIAQVSELLRK 182

Query: 176 SPKKRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
               R+ L+FSAT+   +   A         VR++   +      + +     A  D+  
Sbjct: 183 MSPGRQTLLFSATMPSTLAEFASAGLNAPQLVRLDTERKISPELGLAFFTCRCAFEDKVA 242

Query: 234 AIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           A+++++R      +  I+F +TR        +L +       + G + Q  R   +   R
Sbjct: 243 AMLHLVREVVPANQLTILFTATRHHAEFLYTLLLKEGVDAACVFGSMDQTARKIHVAKFR 302

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            GR+ + + TDVAARGID+P ++ VI+ +    PE  +HR GR  RAGR G +  ++ + 
Sbjct: 303 AGRSHLLVTTDVAARGIDIPLIDNVINFDFPPKPELFVHRVGRAARAGRSGTAYSLLTRE 362

Query: 352 MQRRAERLFREANVSVVWEPA 372
                  L    +  V   P 
Sbjct: 363 ELPYLLDLHLYLSRDVKPAPL 383


>gi|104783494|ref|YP_609992.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
 gi|95112481|emb|CAK17208.1| ATP-dependent RNA helicase RhlB [Pseudomonas entomophila L48]
          Length = 488

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/371 (30%), Positives = 182/371 (49%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   LR +D +  AQTG+GKT AF +++ S L    
Sbjct: 106 LSNEVMHAIHDLGFPYCTPIQAQVLGHTLRGQDAIGRAQTGTGKTAAFLISIISQLQQVP 165

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   +G  V++   G     + +      
Sbjct: 166 PPKERYMGEPRALIIAPTRELVVQIAKDAMALTKYSGLNVMSFVGGMDFDKQLKSLEARH 225

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 226 CDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 285

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 286 LLFSATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQN 345

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             +  +VF + +  V R  + L         LSG++ Q +R   L+  R+GR  V +ATD
Sbjct: 346 KWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLENFREGRISVLVATD 405

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 406 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGVSISFAGEDDSYQLPAIEEL 465

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 466 LGRKIKCEMPP 476


>gi|87120846|ref|ZP_01076739.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
 gi|86164074|gb|EAQ65346.1| ATP-dependent RNA helicase [Marinomonas sp. MED121]
          Length = 443

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 107/380 (28%), Positives = 176/380 (46%), Gaps = 14/380 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           +   I  A+++ GY   TS+Q+  +   L ++++L ++QTG+GKT +F L L   L    
Sbjct: 8   LSTPILNAVAKLGYTQPTSIQKQAIPAILLDRNLLAASQTGTGKTASFVLPLLEKLFRNR 67

Query: 64  -AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                          L + PTRELA QV   +     +         GGV    ++  L 
Sbjct: 68  RYNGQTKVRGKRVRILVLTPTRELATQVEESIAEYGKELDFTSMALYGGVDEVPQKERLI 127

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G   +V TPGRL D +  + L+   ++ +VLDEAD MLD+GF DDI  I+D  P  R+ 
Sbjct: 128 EGVDFLVATPGRLVDMVHQRALHFDEVETLVLDEADRMLDMGFIDDIYNIIDRLPDDRQN 187

Query: 183 LMFSATISPAIT----------TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L+FSAT++  +              K +  D + +NI+ +    S ID   + V    + 
Sbjct: 188 LLFSATLNDHVRNLSTTFSGVGMENKEFYDDLLEINISPKETSASSIDQCLITVDKDTKS 247

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             + ++++      A++F   +   ++    L +   +   + G+ SQ  R   L   + 
Sbjct: 248 ALLSHLIKEQEWDQALIFIEKKHGAAKLVSQLEKRGIKADCIHGDRSQSMREKVLAEFKS 307

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G  +  +AT VAARGID+ DL  V++ +L   PE  +HR GRTGRAG  G +V  +    
Sbjct: 308 GELKYLVATGVAARGIDIGDLTRVVNYDLPFKPEEYIHRIGRTGRAGAAGEAVSFVAMGD 367

Query: 353 QRRAERLFREANVSVVWEPA 372
            +    +       +  +  
Sbjct: 368 FKNLCAIESRLGHIIKRKEI 387


>gi|307109230|gb|EFN57468.1| hypothetical protein CHLNCDRAFT_56077 [Chlorella variabilis]
          Length = 390

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 151/378 (39%), Gaps = 34/378 (8%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE+  + + +   + E+G+ N + +QE  +   L  +D+L  A+ G+GKT AF + + 
Sbjct: 40  NSFEDYFLKRELLMGIYEKGFENPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +       +  +   AL + PTRELA+Q  +  + L     V V V  GG S+  +  
Sbjct: 100 EKVD------TSKNEVQALLLVPTRELALQTSQVAKELGKHMAVEVMVSTGGTSLRDDIV 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L    H++V TPGR+ D  +     +      V+DEAD++L   F+  +E ++    + 
Sbjct: 154 RLGATVHVIVATPGRILDLAQKGVAKLDKCAVCVMDEADKLLSPEFQPVVEQLIGFLSQN 213

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R++ ++SAT    +      + +    +N+  E             V    + + +  + 
Sbjct: 214 RQICLYSATFPVTVKQFKDKFLRKPYIINLMEELTLKGV-SQYYAFVEERQKVHCLNTLF 272

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +I+FC++   V     +  +      A                          
Sbjct: 273 AKLSINQSIIFCNSVNRVVVARWMGGDTARMPPAPHIAPPNPHPHI-------------- 318

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
                        + +VI+ +   N E  LHR GR+GR G  G+++ +I    +    ++
Sbjct: 319 ----------HQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGIAINLITYEDRFNLYKI 368

Query: 360 FREANVSVVWEPAPSVEA 377
            +E    +   P P +E 
Sbjct: 369 EQELGTEIKPIP-PVIEK 385


>gi|300858427|ref|YP_003783410.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685881|gb|ADK28803.1| hypothetical protein cpfrc_01010 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206138|gb|ADL10480.1| Putative superfamily II DNA/RNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330695|gb|ADL20889.1| Putative Superfamily II DNA and RNA helicase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 435

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 120/379 (31%), Positives = 182/379 (48%), Gaps = 5/379 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G      +QEA +   L+ +DVL    TGSGKT  FGL + + L       S    
Sbjct: 2   LNRQGITAPFPIQEAAIPDALKGRDVLGRGPTGSGKTFTFGLPMIAAL--AKTGASLPGH 59

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA QV   L+   A  G+ +   +GGVS++R          I+V TPGR
Sbjct: 60  PRGLILVPTRELAAQVRERLDEPAAALGLRILDVVGGVSINRHITAFAAPVDILVATPGR 119

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
             D +  K L +  +    LDEAD+M D+GF   +  +L+ +P+  + L+FSAT+   + 
Sbjct: 120 AQDLVNNKKLFLDKVLITTLDEADQMADMGFLPQVLKLLELTPRDAQRLLFSATLDGDVN 179

Query: 195 TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTR 254
            L + +  D V  + A        + +   L          V +         I+F  T+
Sbjct: 180 KLVERFMHDPVTHSTAEVAAAVDTMTH-YRLHVGDRDSRNDVVLRIAGRIGKTIMFMRTK 238

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V R  K L       V + G+  Q  R+NA+    DG   V +ATD+AARGID+ D++
Sbjct: 239 HGVDRQVKKLRRIGINAVGIHGDKDQNTRTNAITGFSDGSVPVLVATDIAARGIDIGDVD 298

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV--SVVWEPA 372
           LV+H +  +  +  LHR+GRT RAG  G  V ++ +   +  + L  +A V    +   A
Sbjct: 299 LVVHVDPPAEHKAYLHRAGRTARAGSSGTVVTLVMEEQIQEVDTLLHKAGVNAESLEVSA 358

Query: 373 PSVEAIRERDAQRILQDPL 391
            S E +    AQ+I  +PL
Sbjct: 359 NSPELVHITGAQKITGEPL 377


>gi|242096058|ref|XP_002438519.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
 gi|241916742|gb|EER89886.1| hypothetical protein SORBIDRAFT_10g021310 [Sorghum bicolor]
          Length = 567

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/434 (23%), Positives = 196/434 (45%), Gaps = 23/434 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +   +   +A++E  Y +LT +Q   +   +   DVL SA+TGSGKT+AF +   
Sbjct: 102 KTFSELYISEFTAKAITEMNYTHLTEIQARSIPHLMLGSDVLGSAKTGSGKTLAFLIPAI 161

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      F+P +    + + PTRELA+Q     + L       +   IGG ++  E  
Sbjct: 162 ELL--HKACFTPRNGTGVIVVCPTRELAIQTHNVAKELMKYHSQTIGYVIGGTNIRNEAN 219

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +  G +++V TPGRL DH+R     +   L+ +++DEAD +L+  F +D++ I    P 
Sbjct: 220 QIVKGINLLVATPGRLLDHLRSTSGFHYKRLQCLIIDEADRILEQNFEEDMKQIFKRLPS 279

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNI--------ASENRQHSDIDYRAVLVALSD 230
            R+ ++FSA  +  +   A                     S+ +   +   +   V  S+
Sbjct: 280 DRQTVLFSAPQTQKVVDFANFTFGQNEERQRKLVYVGVDDSKLKPTVEGLQQGYCVIPSE 339

Query: 231 RDNAIVN-----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +   ++      +         +VF S+ +SV    ++L     +   + G+L QQ+R++
Sbjct: 340 KRFLVLYAFLRRMQLREQGVKIMVFFSSCSSVKFHAELLNFFGIECYDIHGQLKQQKRTS 399

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMS 344
                   +  + + T+VAARG+D+PD++ ++  +   +P++ +HR GRT R    KG +
Sbjct: 400 TFFRFLKEKRGILLCTNVAARGLDIPDVDYIVQYDPPDDPKDYIHRVGRTARGDEGKGSA 459

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI--RERDAQRILQDPLFLDSIQGDEKK 402
           +  +     +    L + AN+S+      S + +   +   + I+    FL+    +  +
Sbjct: 460 LLFLLPEELKLLIYL-QAANISLTQYVF-SEKHVPKSQSQLENIVGGNYFLNQSAKEAYR 517

Query: 403 MVDVLLAKHDPEKI 416
              +    H  + I
Sbjct: 518 SYLLAYNSHSMKDI 531


>gi|38569505|ref|NP_008941.2| probable ATP-dependent RNA helicase DDX52 [Homo sapiens]
 gi|296439375|sp|Q9Y2R4|DDX52_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
          Length = 599

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 517 TEDDKPLLRSVANVIQQAGCPVPE 540


>gi|237798217|ref|ZP_04586678.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021069|gb|EGI01126.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 459

 Score =  170 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 198/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V ++ 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVIG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++V++ EL+ + E  +HR GRTGRAG KG++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|194758757|ref|XP_001961625.1| GF15062 [Drosophila ananassae]
 gi|190615322|gb|EDV30846.1| GF15062 [Drosophila ananassae]
          Length = 819

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 102/383 (26%), Positives = 173/383 (45%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 396 SGFPREIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 456 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 515

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 516 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVSNL 575

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------------- 216
                              +K   +  + +                              
Sbjct: 576 KPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPATVYIGSVGKPT 635

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 636 ERTEQIVYMMGENDKRKKLMEILSRSIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 695

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 696 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 755

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G+++  + ++       L
Sbjct: 756 RAGKNGVAISFVTKDDSALFYDL 778


>gi|70728428|ref|YP_258177.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
 gi|68342727|gb|AAY90333.1| ATP-dependent RNA helicase RhlB [Pseudomonas fluorescens Pf-5]
          Length = 496

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 118/383 (30%), Positives = 191/383 (49%), Gaps = 5/383 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L  KD +  AQTG+GKT AF +++ + LL   
Sbjct: 112 LAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLVSIITQLLQTP 171

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   TG  V+    G     + +      
Sbjct: 172 PPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKHLEARH 231

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 232 CDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQT 291

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  D   V I +EN   ++++     VA +D+   + N++  +
Sbjct: 292 LLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASANVEQHIYAVAGADKYKLLYNLVTDN 351

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
           G +  +VF + +  V R  + L         LSG++ Q +R   L+  R+G+ RV +ATD
Sbjct: 352 GWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD 411

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L   P++ +HR GRTGRAG  G+S+    ++   +   +   
Sbjct: 412 VAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEAL 471

Query: 363 ANVSVVWEPAPSVEAIRERDAQR 385
               +  E  P  E +R  + +R
Sbjct: 472 LGRKISCE-MPPAELLRPVERKR 493


>gi|297700670|ref|XP_002827359.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Pongo
           abelii]
          Length = 600

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQIPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 223 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 277

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 278 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 337

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 338 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 397

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 398 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 457

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 458 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 517

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 518 TEDDKPLLRSVANVIQQAGCPVPE 541


>gi|297159148|gb|ADI08860.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 652

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 130/441 (29%), Positives = 209/441 (47%), Gaps = 8/441 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   +   D+L   +TGSGKT++FGL L +TL    
Sbjct: 53  LPEQIVRKLAQNGVTTPFPIQAATIPDAMAGSDILGRGRTGSGKTLSFGLPLLTTL---A 109

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 110 GGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERGVD 169

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+FS
Sbjct: 170 ILVATPGRLRDIIDRGAASLDKVQVAVLDEADQMADMGFLPEVTEILDQVPQGGQRLLFS 229

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  D +   +       S + +  ++V    +D A V          
Sbjct: 230 ATLENEIDTLVKRYLVDPITHEVDPSAGAVSTMTHHVLVV--KPKDKAPVTAAIAARKGR 287

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 288 TIIFVRTQLGADRVAEQLRDAGVRAEALHGGMTQGARTRTLADFKDGYVNVLVATDVAAR 347

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V 
Sbjct: 348 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGVD 407

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                      + + D  RI       +     E        A+ D + +     +  R 
Sbjct: 408 ASRHIV-GGAGVFDEDVARITGARSLTEV--QAESAANAAKQAERDVQDLTRELDKAQRR 464

Query: 427 GLCAPEEITPVSLVSGRDRFR 447
                EE   +++ + R+R  
Sbjct: 465 AAELREEADRLTVRAARERGE 485


>gi|296220513|ref|XP_002756342.1| PREDICTED: nucleolar RNA helicase 2 [Callithrix jacchus]
          Length = 799

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 107/580 (18%), Positives = 203/580 (35%), Gaps = 56/580 (9%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +   + L  RG   L  +Q    +     KD++  A+TG+GKT +F + L   
Sbjct: 234 FSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYNGKDLIAQARTGTGKTFSFAIPLIEK 293

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL +         P  L +APTRELA QV ++   +  K                     
Sbjct: 294 LLGDLQDRKRGRPPQVLVLAPTRELANQVSKDFSDITKKLS------------------- 334

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                      G   + +R   ++   +   ++   +       R D E    +      
Sbjct: 335 -VACFYGGTPYGGQFERMRNGLISCWDMGICLIQVEENFKCGHTRKDSEDNPQTLLFSAT 393

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              +   ++               +    +                 +      V  +  
Sbjct: 394 CPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIQCHWTQRAAV--IGDVIRVYS 451

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+FC T+      ++  A          G++ Q++R   L+  R+G   V +AT
Sbjct: 452 GHQGRTIIFCETKKEAQELSQNSAIKQDAQSLH-GDIPQKQREITLKGFRNGSFGVLVAT 510

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +       + +  ++ +
Sbjct: 511 NVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQ 570

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +A +       PS   I +  ++  ++    LDS+             K   EK A   L
Sbjct: 571 KAGIKFKRIGVPSATEIIKASSKDAIR---LLDSVPPTAISHFKQSAEKLIEEKGAVEAL 627

Query: 422 RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEA 481
               A +     +   SL++    F   +   +      +           +G +  ++ 
Sbjct: 628 AAALAHISGATSVDQRSLINSNVGF--VTMILQCSIEMPNISYAWKELKEQLGEEIDSKV 685

Query: 482 RWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKP 541
           + ++  L    G+                 +V    V  ++   +  +  QL     E+P
Sbjct: 686 KGMV-FLKGKLGVC---------------FDVPTASVTEIQEKWRDSRRWQLSVAT-EQP 728

Query: 542 DFRGYKSS---------GFKSKNSQDGATKRFKRFKGASK 572
           +  G +           G +S   Q    +RF+  +G ++
Sbjct: 729 ELEGPREGYGGFRGQREGSRSFRGQRDGNRRFRGQRGGNR 768


>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 460

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 103/365 (28%), Positives = 180/365 (49%), Gaps = 5/365 (1%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F +  +   + + L        T +Q+  +   +  + V+  ++TGSGKT+A+ L +
Sbjct: 53  MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 112

Query: 59  ASTLLAENDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + L +  +   P    +AP A+ + P+REL  QV +  + +   T + V   +GG+S+ 
Sbjct: 113 LNYLKSLEESGDPVKEENAPRAVVMVPSRELGEQVAKVFKSMTHDTRLRVRPALGGMSLE 172

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + RR+      +++ TPGRL   +    +++  ++ ++ DEAD+MLD GF  D   I+D 
Sbjct: 173 QARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEADQMLDQGFLPDTNRIVDC 232

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+   + +FSAT+S  +  L  +    A  +   +  +  S +  + + V    R    
Sbjct: 233 CPEDVNLALFSATVSKTVEKLMNDLFAKAEVIRSKNSGKVVSTLKTKNLTVEDGKRWPLF 292

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L        IVF +TR    +  K L +     V   GE+ + ER   L+  RDG+ 
Sbjct: 293 EKVLAQKVDGGTIVFANTREQCDKIAKELTDKGHACVVYRGEMDKNERRTNLKKFRDGQV 352

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATD+A RG+D+ ++  VI+  L    EN LHR+GRT RAGR G+ V ++ +   R 
Sbjct: 353 GLLVATDLAGRGLDVSNIARVINYHLPKEMENYLHRAGRTARAGRPGLVVNLVTERDSRL 412

Query: 356 AERLF 360
              L 
Sbjct: 413 IAALE 417


>gi|71662019|ref|XP_818022.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70883249|gb|EAN96171.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 792

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++     +   +++ GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 337 VESFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPV 396

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+A+ +APTRELA+Q+  E+  L  +T +   V  GG     
Sbjct: 397 VHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPT 456

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----- 171
              +      I+V  PGRL D      ++ S +K +VLDEAD ML++GF + IE+     
Sbjct: 457 RFEN-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASR 511

Query: 172 --ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              +  + +++ ++  +      +    +  ++    + +        +I  + V V  S
Sbjct: 512 YTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQES 571

Query: 230 DRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ +     I +       ++F  T+ +       L         + G+  Q +R  AL+
Sbjct: 572 EKMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALR 631

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +DG   + +ATDVA+RG+D+P++  VI  +L    ++  HR GRTGRAG KG +    
Sbjct: 632 DFKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFY 691

Query: 349 PQNMQRRAERLFREANVSVVWEPA 372
            +N +     L+          P 
Sbjct: 692 NKNNRNLTVDLYNYLKEHEQDIPL 715


>gi|185132644|ref|NP_001117993.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
 gi|52547136|gb|AAU81664.1| myc-regulated DEAD box protein [Oncorhynchus mykiss]
          Length = 663

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 104/422 (24%), Positives = 206/422 (48%), Gaps = 15/422 (3%)

Query: 2   KIFENIPQVI----GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++     + + E G+ ++T +Q   + P L  +D+L +A+TGSGKT+AF + 
Sbjct: 169 TSFASLAPLVSENTLKGVKEMGFEHMTEIQHKSIQPLLEGRDILAAAKTGSGKTLAFLIP 228

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               +     +F P +    + ++PTRELA+Q    ++ L         + +GG +   E
Sbjct: 229 SIELIY--KLKFMPRNGTGVVILSPTRELAMQTYGVMKELMTHHVHTFGLIMGGSNRTAE 286

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            + L NG +I+V TPGRL DH++   G    +L+ +++DEAD +L++GF ++++ I+   
Sbjct: 287 AQRLANGVNILVATPGRLLDHLQNAAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLL 346

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDN 233
           PK+R+ ++FSAT +  +  LA+   K         +N+ ++ +D      V+     R  
Sbjct: 347 PKRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDNATVDGLEQGYVVCPSEKRFM 406

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L      V+A+ G+  Q +R+       + 
Sbjct: 407 LLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNA 466

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNM 352
            + + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R     G ++ ++    
Sbjct: 467 DSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEE 526

Query: 353 QRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
                R  ++A V +         +  I +    ++++   +L     +  K        
Sbjct: 527 LGFL-RFLKQAKVPLSEFEFSWAKISDI-QGQLNKLIEKNYYLHKSAQEAYKSYVRAYDS 584

Query: 411 HD 412
           H 
Sbjct: 585 HS 586


>gi|313108824|ref|ZP_07794809.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
 gi|310881311|gb|EFQ39905.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
          Length = 441

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 1   MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 57

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 58  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 238 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 357

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 358 VERYLKQNFERRNIKELKA 376


>gi|289616575|emb|CBI56740.1| unnamed protein product [Sordaria macrospora]
          Length = 592

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 101/390 (25%), Positives = 174/390 (44%), Gaps = 28/390 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   +   GY   T +Q   +    +  DV+  AQTGSGKT A+ + + + L+ + 
Sbjct: 140 LHPAMLRNVELAGYDVPTPIQRYCIPSISQGHDVIAIAQTGSGKTAAYLIPIINKLMGKA 199

Query: 67  DRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            + +                    PL + + P+RELAVQ+  E      ++ +   V  G
Sbjct: 200 KKLAAPRPNPATYQPGIDQPCRAEPLVVIVVPSRELAVQIFNEARKFCYRSMLRPCVLYG 259

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDI 169
           G S+  +   L  G  ++V +PGRL D +    + ++  ++ +V+DEADEMLD  ++D+ 
Sbjct: 260 GGSMRDQLDQLSKGCDVLVASPGRLIDFMDRPEVLSLRRVRYMVIDEADEMLDDDWKDEF 319

Query: 170 EFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           + I           + ML  +     A      +   + VR+ +      HS+I    + 
Sbjct: 320 DQILSGGDQEEGNIKYMLFSATFPKSARDLARTHLADNHVRLRVGRAGSTHSNIKQDVIW 379

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V    +  A +++L        I+F +++ +       L       V++ GE +Q+ER  
Sbjct: 380 VEPYLKKQACLDLLNTVPPGRTIIFVNSKRAADELDDFLFNKGVPCVSMHGERTQREREA 439

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRAGRK 341
           A++  R GR+ V I T V ARGID+ ++  VI+ +L S      E   HR GRTGR G +
Sbjct: 440 AMRAFRAGRSPVLITTAVTARGIDVRNVLHVINFDLPSAMYGGIEEYTHRIGRTGRIGHR 499

Query: 342 GMSVFVIPQNMQRRAERLFR---EANVSVV 368
           G++     +  +  A  L R   E    V 
Sbjct: 500 GLATSFYTERDEDLASVLTRTLLETGQEVP 529


>gi|239981277|ref|ZP_04703801.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291453134|ref|ZP_06592524.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
 gi|291356083|gb|EFE82985.1| ATP-dependent RNA helicase [Streptomyces albus J1074]
          Length = 503

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 186/375 (49%), Gaps = 5/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + L    
Sbjct: 83  LPAPLLACLTAQGVTEPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLARL---E 139

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +   +PL L + PTRELA QV   L        + +   +GG+S+ R+   L+ GA 
Sbjct: 140 GRRAEPRSPLGLVLVPTRELAQQVTEALTPYARALRLRMTTVVGGLSLGRQASALRGGAE 199

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I      +  + A VLDEAD+M D+GF   +  +LD      + L+FS
Sbjct: 200 VVVATPGRLKDLIDRGDCRLDQVGATVLDEADQMADMGFMPQVTELLDQVRPGGQRLLFS 259

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y  D    ++       + +++    V   D+    +          
Sbjct: 260 ATLDRNVDLLVRRYLDDPTVHSVDPSAGAVTTMEHHLFQVHGPDKHA--LATEIAARDGR 317

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ +V R  + L  +  +  AL G  SQ +R+  L   RDG     +AT+VAAR
Sbjct: 318 VILFLDTKHAVDRLAEHLLRNGVRAAALHGGRSQAQRTRTLTQFRDGHVTALVATNVAAR 377

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL  +A ++
Sbjct: 378 GIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGASGSVVTLVLPEQRRSMSRLMADAGIT 437

Query: 367 VVWEPAPSVEAIRER 381
                  S EA   R
Sbjct: 438 PQTTRVRSGEAELSR 452


>gi|107102999|ref|ZP_01366917.1| hypothetical protein PaerPA_01004068 [Pseudomonas aeruginosa PACS2]
 gi|296388016|ref|ZP_06877491.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 441

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 1   MFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 57

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 58  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 117

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 118 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 177

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 178 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 238 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 298 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 357

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 358 VERYLKQNFERRNIKELKA 376


>gi|167908511|ref|ZP_02495716.1| ATP-dependent RNA helicase DbpA [Burkholderia pseudomallei NCTC
           13177]
          Length = 435

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 127/356 (35%), Positives = 187/356 (52%), Gaps = 8/356 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L   D++  A+TGSGKT AF LAL + L       +      AL + P
Sbjct: 1   MTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD------ARRFDVQALVLCP 54

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L   +  V V    GG  +  + + L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTQSLEHGAHIIVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GHLTLDALNTLVLDEADRMLDMGFFDDIAKVARQCPPTRQTLLFSATYPDGIAKLSQQFL 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +   RV +   +        R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 175 RHPKRVKLEERHDDSKI-RQRFYEVTEDERLHAVGLLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHALALHGELEQRERDQVLIRFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
           + +PE  +HR GRTGRA + G ++ +   N   R   + +     V W P   ++A
Sbjct: 294 TPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGGIEQALAREVEWHPLAELKA 349



 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             GG            +  G K K     ++  L   +G +   IG I V    T+V   
Sbjct: 348 KAGGDAPLLPSMETLQILGGRKDKIRPGDVLGALTGDAGFSGAQIGKINVTEFSTYVAVE 407

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 408 RGIARDALRKLNAGKIKGKRVKVRLMD 434


>gi|224043524|ref|XP_002197738.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Taeniopygia
           guttata]
          Length = 817

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 190/405 (46%), Gaps = 10/405 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F + P  +   + L E  Y  +T +Q   +   L+ KDVL +A+TGSGKT+AF +  
Sbjct: 10  IQRFSDFPLSKKTLKGLQESQYRVVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPA 69

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   ++ A     L I+PTRELA Q  + L  +         + IGG  +  E 
Sbjct: 70  LELLYRQQ--WTSADGLGVLIISPTRELAYQTFKVLRKVGKNHEFSAGLIIGGKDLKEES 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + +   ++      L           S L+ ++LDEAD +LD+GF D +  I+++ PK
Sbjct: 128 ERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +    D   V+  L  + N + 
Sbjct: 188 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYVVCELQQKVNMLY 247

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K  IVF S+   V    +V  +      V+AL G+  Q +R          +
Sbjct: 248 SFLRTHLKKKTIVFFSSCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKK 307

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  VI  +   +    +HR GRT R    G ++  ++P   +
Sbjct: 308 AAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 367

Query: 354 RRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
              E+L  R+  +S +      +  I++R    + QD    +  Q
Sbjct: 368 GMVEQLAQRKVPISEIKINPEKLTDIQKRLQAFLAQDQELKEKAQ 412


>gi|56460521|ref|YP_155802.1| ATP-dependent RNA helicase DbpA [Idiomarina loihiensis L2TR]
 gi|56179531|gb|AAV82253.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 474

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 215/418 (51%), Gaps = 21/418 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   L E GY  +T VQ   L   L   D +V A TGSGKT AF L L + L   
Sbjct: 27  NLPPALLTRLDEIGYQQMTPVQSLSLPVILNNTDAVVRADTGSGKTTAFALTLLAKLE-- 84

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
               + + +P AL + PTRELA QV  E+  L      + +    GG     +   L++G
Sbjct: 85  ----AKSFSPQALVLCPTRELAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHG 140

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AH++VGTPGR+ DH+  + +++S L  +VLDEAD ML++GF+D +  I+   PK R+ L+
Sbjct: 141 AHVLVGTPGRVLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLL 200

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    I  LA+       R   A + +    I+     +   D    ++N+L  H  
Sbjct: 201 FSATYPKNIAALAEQV-TTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLVMNLLGDHQP 259

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +N +VFC+T+  V      L  + F V+AL GEL Q++R  A+    +G ARV IATDVA
Sbjct: 260 ENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQAIIQFSNGSARVLIATDVA 319

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           +RG+D+ +L+LVI   ++ + +   HR GRTGRAG++G+++ +I +    +   L     
Sbjct: 320 SRGLDIAELDLVISVNMAHDLDTHTHRIGRTGRAGKEGVAITLIAEKDDYKMRLLEDTFA 379

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             +  +PAP++         R L+  +    + G +K  +        P  I     +
Sbjct: 380 EPIQVKPAPAL------SNNRPLKANMSTIQVSGGKKDKLR-------PGDIVGALTK 424



 Score = 55.4 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
             S   +S G K K     ++  L + + ++   IG I+++    FV V++         
Sbjct: 399 NMSTIQVSGGKKDKLRPGDIVGALTKDNVLSADDIGKIKLESTFGFVAVNSRLAKHALGL 458

Query: 525 VKLDKGIQLKY 535
           +  +K    K+
Sbjct: 459 INNNKIKGKKF 469


>gi|311069115|ref|YP_003974038.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
 gi|310869632|gb|ADP33107.1| ATP-dependent RNA helicase; cold shock [Bacillus atrophaeus 1942]
          Length = 438

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 193/396 (48%), Gaps = 18/396 (4%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE  ++   I +A+   G+   T +Q+ ++   L+ + V+  +QTG+GKT A+ L
Sbjct: 1   MKETKFELYDLKPFIIDAVHRLGFYEPTDIQKRLIPAVLKRESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCIGGVS 113
            L + +    D         A+  APTRELA Q+ +E   +        +     IGG  
Sbjct: 61  PLLNEIDPNKD------VVQAVITAPTRELANQIHQEALKITESMTDDSIRSKCFIGGTD 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + LN+   K++V+DEAD MLD+GF  D+++I 
Sbjct: 115 KQKSIDKLKTQPHLVVGTPGRIADLIKEQALNVYKAKSLVIDEADLMLDMGFIADVDYIG 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+  +ML+FSATI   +    K Y ++    ++  +      I++  +     D+D 
Sbjct: 175 SRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQITAEKIEHVLIPSKHRDKDK 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +I+ +      IVF +T+ +       L     ++  L G L+ +ER   ++ + D 
Sbjct: 235 LLFDIMSHQNPYLGIVFANTKNTADHIASYLTGKGMKIGLLHGGLTPRERKKVMKQINDL 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +   + +
Sbjct: 295 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELSDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVE----AIRERDAQR 385
               +L +   +   +      E      R+R   R
Sbjct: 355 DALVKLEK-MGIVFEYVELEKGEWKKGDDRQRRKNR 389


>gi|289434733|ref|YP_003464605.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289170977|emb|CBH27519.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E D 
Sbjct: 26  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKD- 84

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 85  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 140 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     D+ + + N+L       
Sbjct: 200 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRDKLDLLKNVLVGSQPYL 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 260 AIVFTNTKTTADEVANGLTERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 320 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 379 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 412


>gi|229098758|ref|ZP_04229696.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
 gi|229104916|ref|ZP_04235573.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228678490|gb|EEL32710.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-28]
 gi|228684602|gb|EEL38542.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-29]
          Length = 436

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 10  DFKPFLIDAIRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   + N+L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIELVKNMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF +T+         LAE   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|229174959|ref|ZP_04302479.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
 gi|228608627|gb|EEK65929.1| ATP-dependent RNA helicase yqfR [Bacillus cereus MM3]
          Length = 436

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 104/371 (28%), Positives = 182/371 (49%), Gaps = 10/371 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    P+  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEAQALFVHKANTIIVDEADLMLDMGFIHDVDKIASRMPRNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVVWEPA 372
           + ++       
Sbjct: 364 QRHIEFKHVEL 374


>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
 gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
           DCB-2]
          Length = 443

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 194/375 (51%), Gaps = 8/375 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + EAL++ G V  T +Q++ +   L  +DV   ++TGSGKT+A+ L +   +       
Sbjct: 18  ELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAYLLPVLQKIDRNKREN 77

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHI 127
                   L + PT ELA+QV R+++ L       +  A  IG V++ R+   L+   HI
Sbjct: 78  ------QVLVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHI 131

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +VG+ GR+ + I+ + ++   LK +VLDEAD++LD      ++ +L ++ K  ++L+FSA
Sbjct: 132 IVGSAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSA 191

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T+S      A  + KD     I  +      I ++  +    D+   +  ++R+     A
Sbjct: 192 TLSQDAIEQAAGFLKDPAVQRITMKATVVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRA 251

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +    + +  + L+ H    VA+SG   ++ R  A+   R G+ ++ +A+D+AARG
Sbjct: 252 LIFINKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARG 311

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+ ++  + + ++   P+  LHR GRTGRAG+ G++V ++ Q       ++     +S+
Sbjct: 312 LDIKNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHKIENSLKISI 371

Query: 368 VWEPAPSVEAIRERD 382
                   + I E++
Sbjct: 372 PLRRLSFGKVISEKE 386


>gi|254577027|ref|XP_002494500.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
 gi|238937389|emb|CAR25567.1| ZYRO0A02948p [Zygosaccharomyces rouxii]
          Length = 557

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 128/399 (32%), Positives = 205/399 (51%), Gaps = 15/399 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLALASTL 62
           E +   I + L    Y   T +Q A +     +  +D+L  A TGSGKT+AF + +   +
Sbjct: 163 EQMADAIVKNLK---YHEPTPIQRAAVPNVCNKKFRDLLGIASTGSGKTLAFLIPILMKI 219

Query: 63  LAENDR---FSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRE 117
                R         PLAL +APTRELA Q+ +E E           VA  +GG S+   
Sbjct: 220 DQLPSRPLVLKKMDGPLALILAPTRELAQQIEKEAEELIDAWGKNCEVASIVGGHSIEEI 279

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              +  G  I+V TPGRL D +    L +  ++ +VLDEAD M+D+GF + +  IL +  
Sbjct: 280 SLQVSQGTDILVATPGRLIDCLENHVLTLGKVETLVLDEADRMIDMGFEEQVTSILGNLT 339

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIV 236
           +KR+ +MF+A+++P    +A  Y K+ VRV ++        I      + +   R   IV
Sbjct: 340 QKRQTMMFTASMTPGTEKIAAGYLKNPVRVTVSGSQGSTPMIRQLVEHIGSEEQRFQRIV 399

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L  + A   I     RA+     K   E  ++V  L G  SQ++R  +LQ++R G+ +
Sbjct: 400 EFLPQYRAPIIIFINYKRAADWLVQKFYKETQYKVTVLYGSKSQEQREQSLQLLRKGKVQ 459

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + IAT+VAARG+D+PD+ LVI+ +LS   E+ +HR GRTGRAG +G ++  +        
Sbjct: 460 IMIATNVAARGLDVPDVSLVINFQLSKTFEDYVHRIGRTGRAGHEGTAITFLDDEDPELV 519

Query: 357 ERLFR---EANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           + L++   E N +     AP ++  + R  +R +++ L+
Sbjct: 520 KELYKYLQENNPTGANNFAPRLKE-KYRLGKRRIEEVLY 557


>gi|229071788|ref|ZP_04205003.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
 gi|228711383|gb|EEL63343.1| ATP-dependent RNA helicase yqfR [Bacillus cereus F65185]
          Length = 436

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I     K  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMSKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|194880138|ref|XP_001974373.1| GG21122 [Drosophila erecta]
 gi|190657560|gb|EDV54773.1| GG21122 [Drosophila erecta]
          Length = 816

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 393 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 452

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 453 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 512

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 513 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 572

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 573 KPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 632

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 633 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 692

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 693 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 752

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 753 RAGKTGCAISFVTKDDSALFYDL 775


>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
 gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
          Length = 827

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 224

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 225 PKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVQSQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISYILTEAGISNSSVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  ++  +       L    N   
Sbjct: 345 IDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   L +I  D  +   + +         AG LR     
Sbjct: 405 N------------------IHDNSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|294505859|ref|YP_003569917.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
 gi|294342187|emb|CBH22965.1| Cold-shock DEAD-box protein A [Salinibacter ruber M8]
          Length = 478

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 228/439 (51%), Gaps = 18/439 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+   G+  L  VQ   +   L  +D++V +QTGSGKT AF L L   +  + 
Sbjct: 48  LSGHMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLFDLVNPDK 107

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV----AVCIGGVSVHRERRDLQ 122
           +          L + PTRELA Q+  E E +   T         +  GGV    +   L+
Sbjct: 108 EEQ------QVLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGGVGYQPQIDGLK 161

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           NGA +V+GTPGR+ DHI+    + S L+ +VLDEADEML +GF  D++ I++  P  R  
Sbjct: 162 NGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEMLSMGFYPDMKDIVEHVPGDRVS 221

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            M+SAT+ P + ++A+ +  D   ++++++     + +YR  LV   D+D  +  +L   
Sbjct: 222 YMYSATMPPKVRSVAREFLDDPGFLSLSTDKVSVEENEYRYYLVNPMDKDRVMAQLLELE 281

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             ++A++F +T+  VS   K L+   + +  +SG+LSQ++R  AL  +R+G+ R+ +ATD
Sbjct: 282 EPESALIFANTKREVSYLNKFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATD 341

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VAARGID+ DL  V   ++  + E ++HRSGRT RAG +G ++ +     +   +R+   
Sbjct: 342 VAARGIDVSDLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMANT 401

Query: 363 ANVSVVWEPAPSV------EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            ++ +     P+       E ++ER A    + P   +    ++   +   L+   PE +
Sbjct: 402 YDIELEKAELPADPHSEARELLQERYAN--AEAPANGEEPGVEDFVPLVKELSDEQPELL 459

Query: 417 AAGFLRIHRAGLCAPEEIT 435
           A+    ++       EE  
Sbjct: 460 ASLITELYAEAKTEDEEEK 478


>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013518|sp|A5DY34|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 203/446 (45%), Gaps = 31/446 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +   + I ++L + G+   T VQ + +   L  KD++ SAQTGSGKT A+ + + 
Sbjct: 196 KTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVASAQTGSGKTAAYLIPII 255

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRER 118
             LL        +++  A+ + PTRELA+QV      L    + +   + +GG+S+ ++ 
Sbjct: 256 ERLLY----VKNSTSTKAIILTPTRELAIQVHDVGRKLGQFVSNLNFGMAVGGLSLKQQE 311

Query: 119 RDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L+    IV+ TPGRL DHIR     ++  ++ +++DEAD ML+ GF++++  IL   P
Sbjct: 312 QQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIP 371

Query: 178 KKRRMLMFSATISPAITTLAKNY---QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           K++R  +  +                 K                      +    +   A
Sbjct: 372 KQKRQTLLFSATMNNTKIQDLVQLSLNKPIKVSIDPPRTVASKLEQQFVRIRKREELKPA 431

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +L        +VF  T+    +   +L      V  L G L+Q++R  A        
Sbjct: 432 VLYLLLKKLEGRTVVFTRTKVEAHKLRIILGLLGLTVAELHGALTQEQRL-ANVKAFKNN 490

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V I TD+AARG+D+  +E VI+ ++    E   HR GRT RAGRKG S+  + ++MQ 
Sbjct: 491 VNVLICTDLAARGLDI-RIEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQD 549

Query: 355 RAERLFREANV--------SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
           R   + + A           + W+         E+   +I  +   ++ +  +EK+  ++
Sbjct: 550 R--NIVKNAIQFNSRSVARKIDWDEV-------EKIQTKIKLNEGAIEEVIEEEKQAREI 600

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPE 432
           + A+    K A   ++  +     P+
Sbjct: 601 MRAEMQLNK-AENLMKYEKEIKSRPK 625


>gi|125623300|ref|YP_001031783.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492108|emb|CAL97037.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070051|gb|ADJ59451.1| ATP-dependent RNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 446

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 109/458 (23%), Positives = 198/458 (43%), Gaps = 18/458 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  + N    I + L    +   T VQ+ ++   L  +D++  ++TGSGKT  F L + 
Sbjct: 1   MKFTDFNFKDYINQTLENIKFEKPTEVQQKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRE 117
             +  E D         A+  AP+RELA Q+ +  +        +       G     + 
Sbjct: 61  QNINPELDEV------QAVITAPSRELATQIYKAAQEFVKVNDKIRVSNFVGGTDKARQI 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           ++      HIV+GTPGR+ D ++   L +   +  V+DEAD  LD+GF  D++ I  S  
Sbjct: 115 KKLEAAQPHIVIGTPGRIHDLVKSNALVVHTARTFVVDEADMTLDMGFLADVDQIASSFG 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y  + V   IA++      I+   V    S  +  ++ 
Sbjct: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMEKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+  V      L  +  +V  + G++  +ER   +  +++   + 
Sbjct: 235 LTKALNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  +I+ E+  +    +HR GR+GR G +G ++ +   +      
Sbjct: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLRGTAITLYSPSDDSSIR 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +   V+   +     E +   D  R  +     D I    +  +     K  P    
Sbjct: 355 EIEK-MGVTFQPKAVKDGEIVDSYDRDRREKRTKKQDEISLATRGALAKGKKKVKP---- 409

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
                  RA     EE    +  + R++    +R  + 
Sbjct: 410 ----GYKRAIKWQIEEENKKNRRAERNKNARKTRDSRK 443


>gi|145534991|ref|XP_001453234.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420945|emb|CAK85837.1| unnamed protein product [Paramecium tetraurelia]
          Length = 567

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+    PQ++ + L + G+   T++Q    +  L   D++  AQTGSGKT+AF L    
Sbjct: 113 FEDVQCFPQILMDLLLKAGFKGPTAIQAQGWSIALTGHDLIGIAQTGSGKTLAFLLPAIV 172

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +LA+            L +APTREL +Q+  + +     + +  A   GG   + ++  
Sbjct: 173 HILAQARSHDAK----CLILAPTRELTLQIYEQFQKFSVGSQLYAACLYGGQDRYIQKSQ 228

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI---SHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           L+ G  +++  PG     I  + L++     ++ VV     +   + F       +    
Sbjct: 229 LRKGPQVLIACPGLYHPQIADRMLDMGFEPQIRKVVDQIRPQRQTMLFSATWPKEVQKLA 288

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                          +   +    K  V V  A E  Q  +                ++ 
Sbjct: 289 LDFCKQEPVHIQIGNVELTSNKMIKQIVYVMKAIEKNQRYNQTIDDHQYLCYLNILRLLY 348

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+    K  ++FCST+    +  K L     + +AL G+  Q ER   +   R+GR+  
Sbjct: 349 LLKDIAHKKILIFCSTKKGCDQLQKTLDREGIRCLALHGDKKQSERDYVMSHFRNGRSTA 408

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D+ D+E+V++ ++    E+ +HR GRTGRAG  G S+     +   R  
Sbjct: 409 LIATDVASRGLDIKDIEIVVNYDMPKVIEDYVHRIGRTGRAGANGQSISFFASDEDARMA 468

Query: 358 R----LFREANVSVVWE 370
           +    + RE+   + +E
Sbjct: 469 KDLVEILRESQNDIPYE 485


>gi|302803420|ref|XP_002983463.1| hypothetical protein SELMODRAFT_730 [Selaginella moellendorffii]
 gi|300148706|gb|EFJ15364.1| hypothetical protein SELMODRAFT_730 [Selaginella moellendorffii]
          Length = 457

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 113/417 (27%), Positives = 190/417 (45%), Gaps = 16/417 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +P  ++  + L +  YV +T +Q A L   L  +D+L +A+TGSGKT+AF + + 
Sbjct: 1   TLFQQLPLSRLTLDGLKDAKYVTMTDIQRAALPHALCGRDILGAAKTGSGKTLAFLIPVI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R++      AL I+PTRELA+Q+  EL  +     +   + IGG       +
Sbjct: 61  EKLY--RLRWTSMDGVGALIISPTRELAMQIFDELRKVGKFHDLSGGLLIGGRKDVSIEK 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
              NG +I+V TPGRL  H+      + S LK +VLDEAD +LD+GF   +  I+   PK
Sbjct: 119 QSVNGLNILVCTPGRLLQHMHETVNFDCSPLKLLVLDEADRILDMGFAGTLNQIIAQIPK 178

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+  +FSAT + ++  LA+   +      V+  S     + +    ++V L  + + + 
Sbjct: 179 ERQTFLFSATQTRSVQDLARLSLQSPEYLAVHAESAVATPARLQQTVMVVPLDQKIDTLW 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++ H     +VF S+   V    +        V         ++     A     +  
Sbjct: 239 SFIKSHLRAKVLVFLSSCKQVKFVYEAFKHLRPGVPLTCLHGRLKQGGRLDAFYKFVEAE 298

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P ++ V+ A+   +    +HR GRT R    G S+ ++  +  +
Sbjct: 299 YAVMFATDIAARGLDFPTVDWVVQADCPEDVATYIHRVGRTARYKASGRSLLLLSPSETK 358

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
               L  EA + +            E+  Q + Q    L S   D K M       +
Sbjct: 359 MV-ALLEEAKIPIKVLKP------NEKKIQSVSQLISGLLSKNADLKYMAQRAFTTY 408


>gi|228954569|ref|ZP_04116594.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229081545|ref|ZP_04214043.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|229180563|ref|ZP_04307905.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|229192495|ref|ZP_04319458.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228591072|gb|EEK48928.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 10876]
 gi|228602987|gb|EEK60466.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 172560W]
 gi|228701750|gb|EEL54238.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock4-2]
 gi|228805226|gb|EEM51820.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 436

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|167384693|ref|XP_001737060.1| ATP-dependent RNA helicase DBP4 [Entamoeba dispar SAW760]
 gi|165900336|gb|EDR26680.1| ATP-dependent RNA helicase DBP4, putative [Entamoeba dispar SAW760]
          Length = 697

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 101/447 (22%), Positives = 198/447 (44%), Gaps = 17/447 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  P  +   + L +  ++ +T +Q A +   L  +D++ +A+TGSGKT+AF + L 
Sbjct: 89  KRFDQFPISKSTIQLLKKNQFITMTPIQRAAIPHALAGRDIIGAARTGSGKTLAFLIPLI 148

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     R++      ++ ++PTRELA Q+      +  +     A+  GG     E +
Sbjct: 149 EFMY--RSRWTELDGLCSIILSPTRELAQQIFDVFASITGE-RFTAALITGGKDTKEEAK 205

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++    ++      L         N + L+ ++LDEAD +LD+GF+ D+  IL+  PK+
Sbjct: 206 VIRLMNVLICTPGRLLYHLDNTPHFNTTPLRILILDEADRILDMGFKKDLTAILEHLPKQ 265

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+ ++FSAT + ++  L +   +    +++  + +  +    +   +L+   D+ N + +
Sbjct: 266 RQTMLFSATQTKSVQDLIRLSLRHPEYISVDEKAQYATPESLNQTYMLLGDGDKINVLFS 325

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRA 295
            +R H     IVF  T   V  F +   +     V     G  SQ  R+  L      + 
Sbjct: 326 FIRTHTNSKMIVFFQTTKEVRFFFETFKKLRVGAVLYLLYGRQSQNSRNEQLSTFTKEKR 385

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +   TD+A+RG+D+  ++ ++  +   +    +HR GRT R    G ++ ++  N Q  
Sbjct: 386 GILFCTDIASRGLDIQGVDWIVQYDCPEDTAQYIHRVGRTARLNHNGQALLLLTHNEQAF 445

Query: 356 AERLFREANVSV--VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH-- 411
            E+L + A V +  V      ++ I     + +++ P+     +      +  L   H  
Sbjct: 446 IEQLEK-AKVPLNRVEPNIARMKNIANDITELMIELPIIKHYAEKSIDAYIYSLTKMHNK 504

Query: 412 ---DPEKIAAGFLRIHRAGLCAPEEIT 435
              D EK+    +R          E T
Sbjct: 505 TVFDSEKVDEKAMRQSYGLFADKLEET 531


>gi|327291685|ref|XP_003230551.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like [Anolis
           carolinensis]
          Length = 487

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 155/411 (37%), Gaps = 23/411 (5%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            FE +         I   +   G+   T VQ   +   L  +++L  A TGSGKT+AF L
Sbjct: 68  TFEQLREEYKISPRIMRNVEAAGFQAPTPVQMQAIPAMLHRRELLACAPTGSGKTLAFSL 127

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL +APTRELA Q  REL  L   TG  + +        +
Sbjct: 128 PILTHLKQPMNK-----GFRALILAPTRELASQTHRELLKLSEGTGFRIHMIHKAAEAAK 182

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    V+ T      ++  +      L  V     DE              +  
Sbjct: 183 KFGPKSSQKFDVLVTTPNRLIYLLKQDPPAIDLSRVEWLVVDESDKLFEEGKTGFRDQLA 242

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F   SSP  +R L  +            N          A      +       + + 
Sbjct: 243 TLFSACSSPLAKRALFSATFAHDVEQWCRLNLDSVVSVSIGARNAAAETVDQELLFVGSE 302

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ + ++   A   +VF  +        + L         +  + +QQ+R + + 
Sbjct: 303 TGKLLAMRDFVKKGFAPPVLVFVQSIERAKELFRELIYEGINADVIHADRTQQQRDSVVH 362

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARG+D   + +VI+ +  S+    +HR GRTGRAG  G ++   
Sbjct: 363 GFRAGKIWVLICTALLARGMDFKGVNVVINYDFPSSAVEYIHRIGRTGRAGHAGKAITFF 422

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
            ++ +   R    + + A   V  +       ++ +  +R+++ PL  + I
Sbjct: 423 TEDDKPLLRSIASVIQRAGCPVP-DYIQHFRKLQSKQKKRLIKKPLEREHI 472


>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
 gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
          Length = 431

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 120/394 (30%), Positives = 199/394 (50%), Gaps = 12/394 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             FE +   P+ + + L+   Y+N T VQ   +   L  +D+L  A TGSGKT AF L +
Sbjct: 13  TTFEQLGLIPE-LLKRLTLLEYLNPTLVQGKTIPAVLSGRDLLAGAITGSGKTAAFALPM 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHR 116
              L   + + S  +    L + PTRELA QV    +      K  + +    GGVS + 
Sbjct: 72  LQKLAKSSAKVSKGNQVSGLVLVPTRELAQQVAESFKSYGQLIKPRLKIEAVFGGVSANT 131

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ GA ++V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L   
Sbjct: 132 QMLAMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALL 191

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK ++ L+FSAT    + TL  N     V + I SE +       +   V  + +   + 
Sbjct: 192 PKHKQTLLFSATFPEEVKTLTDNLLSTPVEIQIQSEEQTTL--KQQVYTVNRNRKTALLA 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++++ +  +  +VF S + + +R  + LA+          + SQ  R+  L+  ++G   
Sbjct: 250 HLIKENDWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  
Sbjct: 310 VLIATDIAARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           + + ++  + +  E     EA    D +  L  P
Sbjct: 370 KLIEKKNKIKLDREQVEGFEA----DDEAPLDCP 399


>gi|39995299|ref|NP_951250.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
 gi|39982061|gb|AAR33523.1| ATP-dependent RNA helicase DbpA [Geobacter sulfurreducens PCA]
          Length = 460

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 137/361 (37%), Positives = 207/361 (57%), Gaps = 10/361 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +   L+  GY  +T +Q   L   L  KDV+  A+TGSGKT AFG+ L 
Sbjct: 4   KAFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGIGLL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRER 118
           S L A + R        AL + PTRELA QVG+EL  L   T  + +    GGV    + 
Sbjct: 64  SRLDALSFRV------QALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQL 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GAH+V+GTPGRL DH+R   L++S L+ +VLDEAD MLD+GF+DDI  ++ ++P 
Sbjct: 118 GSLEHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPP 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+FSAT   +I  ++   Q++ V V++   + + +  +     V    R  A+  I
Sbjct: 178 KRQTLLFSATYPDSIAAMSAGVQREPVEVSVDEVHGEGAI-EQVFYEVDSGQRIEAVERI 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L ++  ++A++FC+T+         LA   +  +A+ G+L Q+ER   L    +  A V 
Sbjct: 237 LGHYRPESALIFCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSASVL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+ +L  VI+ EL+ NPE   HR GRTGRAG +G++V ++     R    
Sbjct: 297 VATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESRLIAA 356

Query: 359 L 359
           +
Sbjct: 357 I 357



 Score = 63.5 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 459 SRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
           ++          +  G K K     ++  L    G+    +G I V    T+V ++    
Sbjct: 378 AKPPLPPMVTLCIDGGRKNKLRPGDILGALTGEGGMPASEVGKIDVFDFFTYVAIARQSS 437

Query: 519 DLLRRTVKLDKGIQLK 534
           +   + +   +G ++K
Sbjct: 438 E---QALNFLRGHRIK 450


>gi|15598662|ref|NP_252156.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|254236418|ref|ZP_04929741.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
 gi|9949609|gb|AAG06854.1|AE004767_5 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
 gi|126168349|gb|EAZ53860.1| hypothetical protein PACG_02400 [Pseudomonas aeruginosa C3719]
          Length = 446

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 63  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 362

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 363 VERYLKQNFERRNIKELKA 381


>gi|326796081|ref|YP_004313901.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546845|gb|ADZ92065.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 446

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 97/379 (25%), Positives = 180/379 (47%), Gaps = 6/379 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  +   +  +L   GY   T +QE  +   +  +D+L S++TGSGKT A+ L   +
Sbjct: 3   FKDF-GLDTRLMRSLEHFGYDTPTQIQECAIPEAIAGRDLLASSKTGSGKTFAYLLPAIN 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +      P  + + PTRELA QV  +L  L A + +  A+ +GG + + + + 
Sbjct: 62  RVY--QRKALSRRDPRVVVLVPTRELAKQVYGQLRTLLAGSRLTSALILGGENFNDQHKA 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF---RDDIEFILDSSP 177
           LQ   H VVGTPGRL DH+  + L +   + ++LDEAD MLDLGF      I        
Sbjct: 120 LQKDPHFVVGTPGRLTDHLEKRHLYLEGTELLILDEADRMLDLGFADSMRAINNAASHRQ 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++      +   +       +  ++ +        ++      +  +   L  ++  + +
Sbjct: 180 RQTLFFSATLDNTDVSVIAEELLREPSRVAVGHGTDQHQDISQHVFLCDHLDHKEALLKH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     K  IVF +T+    R ++++    +   ALSG+LSQ  R++ ++    G+ ++
Sbjct: 240 LVSNAELKQGIVFTATKQDTVRLSELVTSWGYTSEALSGDLSQSARNSVMENFSRGKFQI 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++TD+A+RG+D+  +  V + ++ +  E  +HR+GRTGRAG KG +   +        +
Sbjct: 300 LVSTDIASRGLDIAAVSHVFNFDVPNPAEEFVHRTGRTGRAGFKGDAYTFVGPKDWYNFK 359

Query: 358 RLFREANVSVVWEPAPSVE 376
            +     +    E    +E
Sbjct: 360 AVEEFLKIQFTTEQVEGLE 378


>gi|225679862|gb|EEH18146.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Paracoccidioides brasiliensis Pb03]
          Length = 615

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 179 SGLPKRLLSIIDKVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIGE 238

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 239 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSTPLGFNVVSIVGGHSLEEQAYS 298

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 299 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVAN 358

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +P   +     +    +  + +                             
Sbjct: 359 EKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNVGEA 418

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   V+  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 419 VDTVEQRVEFVSGEDKRKKRLAEILASREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 478

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 479 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 538

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 539 RTGRAGKSGVAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 589


>gi|209762788|gb|ACI79706.1| ATP-dependent RNA helicase [Escherichia coli]
 gi|320646171|gb|EFX15111.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str.
           493-89]
 gi|320651466|gb|EFX19862.1| ATP-dependent RNA helicase SrmB [Escherichia coli O157:H- str. H
           2687]
          Length = 444

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 117/383 (30%), Positives = 181/383 (47%), Gaps = 8/383 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S    
Sbjct: 19  LQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GP 76

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L + PTRELA+QV      L   T + +A   GGV+             IVV T GR
Sbjct: 77  PRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGR 136

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPA 192
           L  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT      
Sbjct: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAI 196

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
                +  +         S   +     +      L  +   +V++L+   A  +IVF  
Sbjct: 197 QDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVR 256

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+PD
Sbjct: 257 KRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPD 316

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSVV 368
           +  V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V+
Sbjct: 317 VSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVI 376

Query: 369 WEPAPSVEAIRERDAQRILQDPL 391
            E  P   A  E+   +  +  L
Sbjct: 377 DELRPKTRAPSEKQTGKPSKKVL 399


>gi|300692366|ref|YP_003753361.1| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
 gi|299079426|emb|CBJ52099.2| ATP-dependent RNA helicase, stimulated by 23S rRNA [Ralstonia
           solanacearum PSI07]
          Length = 471

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 193/371 (52%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + GY ++T +Q A L   L   D++  A+TGSGKT AF LAL + L    
Sbjct: 21  LAPAVLANLVQLGYTDMTPIQAASLPIALAGHDLIAQAKTGSGKTAAFSLALLARLD--- 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
              +      A+ + PTRELA QV +E+  L   +  V V    GG  +  +   L++GA
Sbjct: 78  ---ARRFDVQAMVLCPTRELADQVTQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGA 134

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ DH+    L +  LK +VLDEAD MLD+GF DDI  ++   P +R+ L+F
Sbjct: 135 HVVVGTPGRIMDHLERGNLALGALKTLVLDEADRMLDMGFFDDIATVVRQCPPERQTLLF 194

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  L++       +     E    S I  R   V   +R +A+  +L+++   
Sbjct: 195 SATYPDGIAKLSRQI-LRNPKEVKLEERHDDSKIRQRFYEVTDDERLHAVGLLLKHYRPV 253

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+        VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 254 STLAFCNTKQQCRNLLDVLRAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAA 313

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE VI+ +++ +PE  +HR GRTGRA + G ++ +   +   R   + +    
Sbjct: 314 RGLDIAQLEAVINVDVTPDPEVHVHRIGRTGRADQDGWALSLASMDEMGRVGSIEQALGR 373

Query: 366 SVVWEPAPSVE 376
            V W     ++
Sbjct: 374 EVEWHRLAELD 384



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV--- 511
             G             +  G K K     ++  L   +G     IG I      T+V   
Sbjct: 384 DTGSDAPLLPPMETLQILGGRKDKIRPGDVLGALTGDAGFRGDQIGKINATEFSTYVAVE 443

Query: 512 -EVSADGVDLLRRTVKLDKGIQLKYLG 537
             ++ D +  L       K ++++ + 
Sbjct: 444 RGIARDALRKLNAGKVKGKKVRVRLMD 470


>gi|328874156|gb|EGG22522.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 576

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 193/404 (47%), Gaps = 15/404 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     +  +    G+   +++Q   +   L  +D+L SA+TGSGKT AF + + 
Sbjct: 93  KSFGDLKLQPWLVNSCKILGFKQPSNIQYNTIPKVLEGRDILASAKTGSGKTAAFAIPIL 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L  +           A+ + PTRELAVQ+G + + + +   V  AV IGG+    +  
Sbjct: 153 SLLSEDP------YGVFAVVLTPTRELAVQIGEQFKAIGSAMNVNCAVVIGGIDSVAQSL 206

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL  H+           K +VLDEAD +L   F  +IE I++  P 
Sbjct: 207 VLDKRPHIIVATPGRLASHLSNGLKIALKFCKFLVLDEADRILCEDFELEIEKIVEHLPP 266

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                   +SAT++  +  L     KD       S+      +    + +    +D  +V
Sbjct: 267 IENRQTLLYSATMTNNLKKLQLVPMKDPFVFEDNSKYDTVDTLKQHYIYMPALAKDCHLV 326

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+     + I+F +   +V     +L +   + V+L   L Q+ R  AL+  + G  +
Sbjct: 327 YLLKSFPQSSCIIFVNNCRTVEAVKGMLNKLDIKTVSLHSFLDQKGRLRALKQFKSGFVK 386

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVA+RG+D+PD+++VI+ +LS++ ++ +HR GRT R GR G ++  +  +     
Sbjct: 387 VLIATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRTGKAISFVTPHDVDLV 446

Query: 357 ERLFREANVSVVWEPAPSVEA---IRERDAQRILQDPLFLDSIQ 397
           + +       +   P    E    + E    R + + ++LD ++
Sbjct: 447 KNVETAIGKQLELYPTEDDEVYRHLNEASTARKMVE-IYLDEVE 489


>gi|291299972|ref|YP_003511250.1| DEAD/DEAH box helicase domain-containing protein [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569192|gb|ADD42157.1| DEAD/DEAH box helicase domain protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 544

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 213/442 (48%), Gaps = 8/442 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL+ERG  +   +Q A +   L  KDVL   +TGSGKT++FGL L  TL  + 
Sbjct: 25  LPPAIVSALAERGVTSPFPIQAATIPDALSGKDVLGRGRTGSGKTLSFGLPLLVTLATDG 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R + A  P  L + PTRELA+QV   L+       + + V  GG S+ R+   L+NG  
Sbjct: 85  GR-TQAKRPRGLILTPTRELAMQVADALDPYARILRLDMKVVCGGTSMPRQIEALRNGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I  K   +  +K  VLDEAD+M D+GF  ++  ILD  P   + ++FS
Sbjct: 144 VLVATPGRLRDLIDRKVCILDSVKIAVLDEADQMADMGFLPEVTEILDQVPPGGQRMLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL + Y  + V   +       + + +  ++  +  +  A V          
Sbjct: 204 ATLEKEIDTLVRRYLSEPVTHEVDPSAGAVTTMSHHVLV--VKPKAKAPVTAAIAGQDGR 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           +I F  T+    R    L E   +   L G ++QQ R+  L+  + G     +ATDVAAR
Sbjct: 262 SIAFVRTQLGADRVADQLREAGVRAEPLHGGMTQQARNAVLERFKGGGLDCLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  +++V+H + + + ++ LHR+GRT RAGR G  V +   + ++    +    +V+
Sbjct: 322 GIHVDGVDVVLHVDPARDGKDYLHRAGRTARAGRSGTVVTLALPHQRKTVFGMLERVDVN 381

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                   V+ +      +++      D ++ D  +  +   A+ D + + A   R  + 
Sbjct: 382 AARHI---VDGVFTDSLAKVIGSGSLTD-MEADTVER-EARSAQRDADDMIARAERQAQR 436

Query: 427 GLCAPEEITPVSLVSGRDRFRD 448
                 E   +   + ++R  +
Sbjct: 437 AAKLHAEAARLRDRAAKERSGE 458


>gi|328773329|gb|EGF83366.1| hypothetical protein BATDEDRAFT_8371 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 460

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 197/400 (49%), Gaps = 11/400 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  +   +  +L      + + +Q+A +   L  +D++  A+TGSGKT AF L +  
Sbjct: 34  TFESIGLRPWLIGSLKSISIRHPSEIQQACIPHILNGRDIIGGAKTGSGKTAAFALPILQ 93

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL + P RELA Q+  +   L     + ++V +GG+ +  +  +
Sbjct: 94  KLSEDP------YGVFALVLTPARELAFQIAEQFRVLGTGINLKLSVVVGGMDMMSQALE 147

Query: 121 LQNGAHIVVGTPGRLCDHIRG--KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           L    H+++ TPGRL DHIR     ++   ++ +V+DEAD +LD  F DD+E IL   P+
Sbjct: 148 LSQKPHVIIATPGRLVDHIRSSSNAIHFKRIRFLVMDEADRLLDDTFSDDLEGILSQLPQ 207

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           KR+ L+F+AT++  I  L  + +        A        +D + +LV+ + RD  + +I
Sbjct: 208 KRQTLLFTATMTDEIKELQMSSKTLPFVYECAERYSTVEKLDQQYILVSSNVRDAYLAHI 267

Query: 239 LRYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +R     K  I+F S   +      +L E   +  AL  ++ Q +R  +L   + G   +
Sbjct: 268 VRESLSGKTMIIFASKCRTCETLRIMLKELGLKSTALHAQMPQNDRLGSLAKFKSGIVPI 327

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDV +RG+D+P +++VI+ EL ++  + +HR GRT RAG+ GMS+  + +       
Sbjct: 328 LIATDVGSRGLDIPTVKVVINYELPADATDYIHRVGRTARAGQGGMSLSFVSERDVDIIH 387

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            + ++    +     P  + +   D   + +    + S  
Sbjct: 388 NIEKKTKKKMTEYTVPENDVLEILDEVNLAKRIAKMASFH 427


>gi|302535753|ref|ZP_07288095.1| ATP-dependent RNA helicase [Streptomyces sp. C]
 gi|302444648|gb|EFL16464.1| ATP-dependent RNA helicase [Streptomyces sp. C]
          Length = 694

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 132/448 (29%), Positives = 212/448 (47%), Gaps = 10/448 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L + G  +   +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 60  TFADLGLPEGVVRKLGQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 119

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L    D  +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 120 RL---ADGHTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 176

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 177 LERGVDVLVATPGRLRDIINRGACSLENVEVAVLDEADQMADLGFLPEVTELLDQVPAGG 236

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL K Y  + V   + S     + + +  ++V    +D A V    
Sbjct: 237 QRMLFSATMENEIGTLVKRYLSNPVSHEVDSAQGNVTTMTHHVLVV--KPKDKAPVTAAI 294

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +A
Sbjct: 295 AARKGRTIIFVRTQLGADRIAEQLIEAGVKADALHGGMTQGARTRVLADFKDGYVNALVA 354

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL 
Sbjct: 355 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLM 414

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A V           A     A+  +     L  +Q D         A+ +   +    
Sbjct: 415 EDAGVDASRHIVQGAGAFDPEVAE--ITGARSLTEVQADSANNAAKQ-AEREVADLTKQL 471

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD 448
            R  R      EE   +   S R+R  D
Sbjct: 472 ERATRRAAELREEADRLVARSARERGED 499


>gi|116051486|ref|YP_789681.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586707|gb|ABJ12722.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 446

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 63  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 362

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 363 VERYLKQNFERRNIKELKA 381


>gi|268567592|ref|XP_002640036.1| Hypothetical protein CBG12508 [Caenorhabditis briggsae]
          Length = 573

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 169/424 (39%), Gaps = 10/424 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            ++   +   LSE      + +Q   +   +  K++L SA TGSGKT+AF L +   +L 
Sbjct: 130 SSLSPSLLTHLSENDIRQPSPIQMQAIPFMMGRKNILASAPTGSGKTLAFALPVIDEILG 189

Query: 65  ENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              R  +S +S  LA+ + PTRELA Q   E     + T + VA   G  +       L 
Sbjct: 190 LKRRADYSKSSKLLAIVLEPTRELAAQTYTEFVKYCSGTSISVANFSGEETDITHADILV 249

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  + +V    ++   +    +     +   + E  E         I +    +   R  
Sbjct: 250 STPNRIVFHLDKIDTSLLRWLVVDESDRLFEVIEGQEKCFRNQLGAI-YKACDAKCTRVA 308

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +            N +   +       +   S             +  AI N+LR  
Sbjct: 309 FFSATFSHEVEKWCKDNIENIGMVCVGERNSSNTSVKQELTYCGTEDGKKVAIRNLLRTA 368

Query: 243 GAKNAIVFCSTRASVSRFTK--VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               A+VF  ++    +  K     +   +V +++   S +ER + ++  R+G   V + 
Sbjct: 369 FRPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDDTMERFRNGEIWVLVC 428

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           T++  RG+DL D+ LVI+ +L ++  + +HR GRTGRAG+ G +V        +  + + 
Sbjct: 429 TELLGRGLDLSDVGLVINYDLPTSIISYIHRVGRTGRAGKTGHAVTYFTDTDMKYIKSIA 488

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDPL--FLDSIQGDEKKMVDVLLAKHDPEK 415
              R++   V        +  R+R  + + + P    + ++    +K      A    EK
Sbjct: 489 TVIRQSGFDVPEYLMEMKKVSRDRKKEMLKRAPKRQKIATVIEQVRKQKMAKAAYEKKEK 548

Query: 416 IAAG 419
           + AG
Sbjct: 549 LEAG 552


>gi|331238187|ref|XP_003331749.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
 gi|309310739|gb|EFP87330.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28 [Puccinia
           graminis f. sp. tritici CRL 75-36-700-3]
          Length = 834

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/414 (25%), Positives = 185/414 (44%), Gaps = 39/414 (9%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P  I E + E GY   + +Q   +   L  +D++  A+TGSGKT +F + +
Sbjct: 397 MRSWEESKLPLQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPM 456

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  L      +    P AL +APTRELA Q+  E      + G      +GG ++  
Sbjct: 457 LTYIGKLPPLTDDNRHLGPYALILAPTRELAQQIEVETNKFALRLGYRCVSIVGGKAMEE 516

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  ++++GA I++ TPGRL D I    L +     VV+DEAD M++LGF + + FILD  
Sbjct: 517 QALNMRDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQL 576

Query: 177 P-----------------------------------KKRRMLMFSATISPAITTLAKNYQ 201
           P                                    ++ ++  +           K  +
Sbjct: 577 PLSNLKPDTEEAEDSSKMTSFVGGVEGFDLTGAKGLYRQTVMFSATMPPAVERLAKKYLR 636

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           + AV     +     +       L     +   ++ +L        IVF + + +  +  
Sbjct: 637 RPAVVTIGVAGQAVDTVDQQVEFLPNEDKKRGRLLEVLNQGHTPPIIVFVNQKKTADQLA 696

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K ++   +    L    +Q++R  AL  +R G + + +ATD+A RGID+PD+ LV++ ++
Sbjct: 697 KDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPDVGLVVNFQM 756

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           +   E  +HR GRTGRAG+ G ++  +  +       L +E   S V +  P +
Sbjct: 757 AGTIEAYVHRIGRTGRAGKVGTAITFLTNDDADVMYDLKQEIMKSPVSKCPPEL 810


>gi|213967864|ref|ZP_03396010.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
 gi|213927207|gb|EEB60756.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           T1]
          Length = 473

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 20  FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 80  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 133

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 134 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRR 193

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 194 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 252

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 253 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 312

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  + 
Sbjct: 313 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 372

Query: 361 REANVSVVWEPAPSV 375
                 + W+   S+
Sbjct: 373 ELQKAPLNWQQYDSL 387



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 397 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 456

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 457 RLNNGKIKGKSLRVRIL 473


>gi|28872121|ref|NP_794740.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|301384383|ref|ZP_07232801.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062325|ref|ZP_07253866.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           K40]
 gi|302132329|ref|ZP_07258319.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28855375|gb|AAO58435.1| ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014545|gb|EGH94601.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 459

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 129/375 (34%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWEPAPSV 375
                 + W+   S+
Sbjct: 359 ELQKAPLNWQQYDSL 373



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|332525439|ref|ZP_08401598.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332108707|gb|EGJ09931.1| DEAD/DEAH box helicase-like protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 415

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 181/373 (48%), Gaps = 5/373 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A +E G+   T VQ+  + P L  +D++  A TGSGKT A+ LA+      + 
Sbjct: 10  LTPALQRACAELGFSIPTPVQQQAIPPALDGQDLVARAPTGSGKTAAYALAMLHR--FDI 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNG 124
                     AL + PTRELAVQ G+ L  +  +    V VAV  GGVSV+ +   L+ G
Sbjct: 68  TPRESRRVTRALLLVPTRELAVQAGQTLRAMAREMAEPVKVAVVFGGVSVNPQMMGLRGG 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +VV TPGRL D +    L +  ++ +VLDEAD +LD GF D++E +L   P +R+ L+
Sbjct: 128 AEVVVATPGRLLDLVERNALKLGEVQLLVLDEADRLLDDGFADELERVLALLPAERQQLL 187

Query: 185 FSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           FSAT    +     +           A+      +I+  AV V  + R   +  +L  H 
Sbjct: 188 FSATFPAPVQALATRLLHAPVQVAVDAAPEAGGPEIEQHAVEVDTAQRTPLLRRLLATHD 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +VF +TR +       L        AL GELSQ  R+  L  +  GR RV +ATD+
Sbjct: 248 WPRVLVFVATRHASEMVAAKLQRAGIAAAALHGELSQGARARVLAELAHGRLRVVLATDL 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+ +P L  V++ +L  +  +  HR GRT RAG +G +   +    +     + +  
Sbjct: 308 AARGLHIPALAAVVNYDLPRSAADYTHRIGRTARAGARGEAWSFVTAASEAHFRLIEKRQ 367

Query: 364 NVSVVWEPAPSVE 376
              V  E     E
Sbjct: 368 GRRVERERLDGFE 380


>gi|321311997|ref|YP_004204284.1| ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320018271|gb|ADV93257.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis BSn5]
          Length = 438

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 190/383 (49%), Gaps = 14/383 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE   +   I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L
Sbjct: 1   MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVS 113
            L + +    D          +  APTRELA Q+ +E   +      + +     IGG  
Sbjct: 61  PLLNKIDPAKD------VVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTD 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I 
Sbjct: 115 KQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIG 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D 
Sbjct: 175 SRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDK 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D 
Sbjct: 235 LLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDL 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +     +
Sbjct: 295 EFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
               RL +   +   +      E
Sbjct: 355 DALVRLEK-MGIEFDYLELEKGE 376


>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
 gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
          Length = 814

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 212/465 (45%), Gaps = 26/465 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +  
Sbjct: 298 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 357

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 358 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 414

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF +++  IL + PK 
Sbjct: 415 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 474

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      VR+ + S+ +    +              R   ++
Sbjct: 475 RQTMLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 534

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       IVF   +    R   +      +   L G +SQ++R  +++  RD +  
Sbjct: 535 FLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 594

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 595 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK-- 652

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
                     VV E   +  A   +   R+++  +   + + +     ++ +VL  + + 
Sbjct: 653 ----------VVKEAVKAGRAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEE 702

Query: 414 EKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +++A   +++ R    +   EEI      +  +  +D   + K G
Sbjct: 703 KQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDKRESKKRG 747


>gi|328771893|gb|EGF81932.1| hypothetical protein BATDEDRAFT_19098 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 839

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 171/378 (45%), Gaps = 8/378 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +P  +   + LS+  +V  T +Q+A L   L  +DVL +A+TGSGKT+AF L +
Sbjct: 61  LKFFAQLPLSKPTQQGLSKCNFVQFTEIQKASLPFALCSRDVLGAAKTGSGKTLAFILPV 120

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E+  +S      A+ I+PTRELA+Q+   L  +     +   + IGG  +  E+
Sbjct: 121 LEVLYRES--WSQMDGVGAVIISPTRELALQIFDVLRKVGRYHSLSAGLLIGGKDLKSEQ 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V      L    +       +LK +VLDEAD +LD GF   I  I+ + PK
Sbjct: 179 DRVARMNILVCTPGRLLQHMDQTPEFICDNLKLLVLDEADRILDNGFEKTINAIIANLPK 238

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT + ++           + V V+  +E     ++  + ++  L  + + + 
Sbjct: 239 SRQTLLFSATQTKSVRDLARLSLQNPEYVAVHDNAEQSTPKNLIQKYLVCTLDKKLDILF 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + ++ H  +  +VF S+   V    +   +    +  L     Q++       +     +
Sbjct: 299 SFIKTHLKQKILVFLSSCKQVRFVFETFCKMQPGMPLLCLHGKQKQAKRVAIFEQYCRKQ 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATD+AARG+D P ++ V+  +   +    +HR GRT R    G ++ ++  + + 
Sbjct: 359 GACLFATDIAARGLDFPAVDWVVQVDCPEDAATYIHRVGRTARYESHGQALLLLLPSEKD 418

Query: 355 RAERLFREANVSVVWEPA 372
                  +  V +     
Sbjct: 419 AMLLSLEQKKVPITEIKV 436


>gi|315090516|gb|EFT62492.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 491

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 123/358 (34%), Positives = 190/358 (53%), Gaps = 5/358 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 27  VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 87  REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 143

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 144 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 203

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 204 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 261

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 262 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 321

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A 
Sbjct: 322 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAG 379


>gi|169600899|ref|XP_001793872.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
 gi|118575175|sp|Q0UY62|DBP3_PHANO RecName: Full=ATP-dependent RNA helicase DBP3
 gi|111068913|gb|EAT90033.1| hypothetical protein SNOG_03302 [Phaeosphaeria nodorum SN15]
          Length = 592

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 119/377 (31%), Positives = 193/377 (51%), Gaps = 15/377 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+   T +Q A     L  +D++  A+TGSGKT+AFG+     +L+            A
Sbjct: 196 AGFTAPTPIQAATWPFLLSGRDMVGVAETGSGKTLAFGVPCVRAILSLPK--DKRKGIKA 253

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + ++PTRELAVQ+  +L  L    G+   VC+ G      +      AHIVV TPGRL D
Sbjct: 254 VIVSPTRELAVQIYDQLVALAHPAGLS-VVCVYGGVPKDPQVAACRKAHIVVATPGRLND 312

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            I     ++S+   VVLDEAD MLD GF + I  I+  +PKKR+ LMF+AT  P++  LA
Sbjct: 313 LIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLA 372

Query: 198 KNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIV-----NILRYHGAKNAI 248
             +    VR+ I        R +  I     ++    ++  ++          +     +
Sbjct: 373 STFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRIL 432

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC  +    R    +    F+V  + G+LSQ++RS +L   ++G+  + +ATDVAARG+
Sbjct: 433 VFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGL 492

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANV 365
           D+P ++LVI+       E+ +HR GRTGRAG++G+++    ++ +  +  L    + AN 
Sbjct: 493 DIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQ 552

Query: 366 SVVWEPAPSVEAIRERD 382
            V  E       +++++
Sbjct: 553 EVPEELLKFGTTVKKKE 569


>gi|291484959|dbj|BAI86034.1| hypothetical protein BSNT_03747 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 447

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 190/383 (49%), Gaps = 14/383 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE   +   I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L
Sbjct: 10  MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLL 69

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVS 113
            L + +    D          +  APTRELA Q+ +E   +      + +     IGG  
Sbjct: 70  PLLNKIDPAKD------VVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTD 123

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I 
Sbjct: 124 KQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIG 183

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D 
Sbjct: 184 SRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDK 243

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D 
Sbjct: 244 LLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDL 303

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +     +
Sbjct: 304 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDE 363

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
               RL +   +   +      E
Sbjct: 364 DALVRLEK-MGIEFDYLELEKGE 385


>gi|329941644|ref|ZP_08290909.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299361|gb|EGG43261.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 480

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 193/375 (51%), Gaps = 5/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L + G      +Q A L   L  +DVL   +TGSGKT+AFGL + +      
Sbjct: 41  LPPALLRVLGDHGVTVPFPIQAAALPDALAGRDVLGRGRTGSGKTLAFGLGMLAR---TA 97

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QVG  L       G+ +A  +GGVS+ R+   L++GA 
Sbjct: 98  GRRAQPKEPLALVLVPTRELAQQVGEALTPYAEALGLRLATVVGGVSLGRQAAALRDGAE 157

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D +   G  +  ++  V+DEAD M DLGF   +  +LD      + ++FS
Sbjct: 158 IVVATPGRLHDLVERNGCRLGRVRIAVVDEADRMSDLGFLPQVTGVLDQVRGDGQRMLFS 217

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y ++    ++   +   + ID+   LV   DR    V          
Sbjct: 218 ATLDRDVDHLVRAYLREPAVHSVDPSSGAVAAIDHHVFLVHGPDRYA--VTTEIAARDGR 275

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V + T+ L  +     AL    SQ +R+  L   +DG     +AT+VAAR
Sbjct: 276 VLLFLDTKHGVDQLTRHLRANGVAAAALHSGKSQPQRTGTLARFKDGGITALVATNVAAR 335

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ + DL+LVI+ + +++P++ LHR+GRT RAGR G  V ++    +R   ++  +A V+
Sbjct: 336 GLHIDDLDLVINVDPATDPKDYLHRAGRTARAGRSGTVVTLVLSGQRRETSQVMTDAGVT 395

Query: 367 VVWEPAPSVEAIRER 381
                  S EA+  R
Sbjct: 396 PEVTKVRSGEAVLSR 410


>gi|125559280|gb|EAZ04816.1| hypothetical protein OsI_26993 [Oryza sativa Indica Group]
          Length = 501

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 118/424 (27%), Positives = 190/424 (44%), Gaps = 23/424 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +     G    T+VQ   +   L  +DVL  A+TGSGKT AF L +   L  + 
Sbjct: 84  LSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDP 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     ALA+APTRELA Q+  +   L A  G+     IGG     + + L    H
Sbjct: 144 ------YGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPH 197

Query: 127 IVVGTPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VV TPGR+   I          +  K +VLDEAD +LD+ F +D+  I  S PKKR+  
Sbjct: 198 VVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTF 257

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILR 240
           +FSATIS  + +L +    ++         +    +    + V    ++     +++ + 
Sbjct: 258 LFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLSKMN 317

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ IVF ST  +      +L E     V+L     Q  R  AL   +  +  V +A
Sbjct: 318 EDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLA 377

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDVA+RG+D+  ++LVI+ ++   P + +HR GRT RA R G+S+  I  Q   R    +
Sbjct: 378 TDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEI 437

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD------SIQGDEKKMVDVLLA 409
                ++           + +A +   A+R+    +  +        + ++KK       
Sbjct: 438 EDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQERKR 497

Query: 410 KHDP 413
           KHD 
Sbjct: 498 KHDE 501


>gi|268566495|ref|XP_002639737.1| Hypothetical protein CBG12465 [Caenorhabditis briggsae]
 gi|187029586|emb|CAP31441.1| hypothetical protein CBG_12465 [Caenorhabditis briggsae AF16]
          Length = 542

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 200/424 (47%), Gaps = 12/424 (2%)

Query: 2   KIFENIP----QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++       + +++   G+  LT +Q   ++P L  KDVL SA+TGSGKT+AF L 
Sbjct: 65  TTFASLDGKVNSNLLKSVQRLGFTTLTEIQAKTIDPLLEGKDVLASAKTGSGKTLAFLLP 124

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               L   N  +   +    + ++PTREL++Q    L  L   + +   + +GG +   E
Sbjct: 125 AIELLHKLN--WKQHNGTGVIIVSPTRELSMQTYGVLTELLEGSNLTFGLVMGGSNRSAE 182

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +  L  G  I+V TPGRL DH++     + +LK +++DEAD +LD+GF  +++ +L   P
Sbjct: 183 KDKLAKGVSILVATPGRLLDHLQNDNFLVRNLKCLIIDEADRILDIGFEIEMQQVLRHLP 242

Query: 178 KKRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           K+R+ ++FSAT SP +  L K   +     V VN  +E      +    ++     R   
Sbjct: 243 KQRQSMLFSATHSPKVDELVKLALHSNPVRVSVNEKAEEATVEGLQQGYIVAPSDKRLLL 302

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +   L+ +  K  +VF S+  SV    ++L       +++ G+  QQ+R++         
Sbjct: 303 LFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDVPCMSIHGKQKQQKRTSTFFTFCQAE 362

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQ 353
           + + + TDVAARG+D+P ++ ++  +    P   +HR GRT R     G ++ V+     
Sbjct: 363 SGILLCTDVAARGLDIPAVDWIVQYDPPDEPREYIHRVGRTARGTNGSGKALLVLRPEEL 422

Query: 354 RRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               R  + A V++        + A  +   + ++    +L+    +  K        H 
Sbjct: 423 GFL-RYLKAAKVTLNEFEFSWNKVANIQTQLESLISKNYYLNKSAKEAYKCYLRAYDSHS 481

Query: 413 PEKI 416
            + I
Sbjct: 482 LKDI 485


>gi|115473551|ref|NP_001060374.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|75329662|sp|Q8L4E9|RH36_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 36
 gi|22093824|dbj|BAC07111.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|22296386|dbj|BAC10155.1| DEAD box protein-like [Oryza sativa Japonica Group]
 gi|113611910|dbj|BAF22288.1| Os07g0633500 [Oryza sativa Japonica Group]
 gi|125601204|gb|EAZ40780.1| hypothetical protein OsJ_25257 [Oryza sativa Japonica Group]
          Length = 501

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 118/424 (27%), Positives = 190/424 (44%), Gaps = 23/424 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q + +     G    T+VQ   +   L  +DVL  A+TGSGKT AF L +   L  + 
Sbjct: 84  LSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDP 143

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     ALA+APTRELA Q+  +   L A  G+     IGG     + + L    H
Sbjct: 144 ------YGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPH 197

Query: 127 IVVGTPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           +VV TPGR+   I          +  K +VLDEAD +LD+ F +D+  I  S PKKR+  
Sbjct: 198 VVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLDINFEEDLRVIFGSLPKKRQTF 257

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILR 240
           +FSATIS  + +L +    ++         +    +    + V    ++     +++ + 
Sbjct: 258 LFSATISDNLRSLLELSGNNSYFFEAYEGFKTVDTLKQLYIHVPPDAKELYLFYLLSKMN 317

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               ++ IVF ST  +      +L E     V+L     Q  R  AL   +  +  V +A
Sbjct: 318 EDNIRSVIVFVSTCRTCQYLDFLLEELGHPAVSLHSHKPQSRRLAALHNFKSSKVPVLLA 377

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDVA+RG+D+  ++LVI+ ++   P + +HR GRT RA R G+S+  I  Q   R    +
Sbjct: 378 TDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARATRGGLSISFITTQRDIRLLHEI 437

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD------SIQGDEKKMVDVLLA 409
                ++           + +A +   A+R+    +  +        + ++KK       
Sbjct: 438 EDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMADEGHEDKVQARKEQKKRAQERKR 497

Query: 410 KHDP 413
           KHD 
Sbjct: 498 KHDE 501


>gi|325119967|emb|CBZ55520.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
          Length = 434

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 178/373 (47%), Gaps = 8/373 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DVL  A++G GKT  F L++   L  + 
Sbjct: 51  LKPELLRAIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDA 110

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDL 121
                     + L IA TRELA Q+  E +        V    +             +D 
Sbjct: 111 SGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLKDP 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKR 180
           +   HI++GTPGR+   I+GK LN   +   VLDE D+ L+    R D++ I  ++PKK+
Sbjct: 171 KTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKK 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNIL 239
           +++ FSAT++  I  + K + +  V V I  E++     +    V +  S+++  + ++L
Sbjct: 231 QVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNRKLNDLL 290

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  + +      ++L E  F  +A+   L Q+ER N  Q  ++   R+ +
Sbjct: 291 DTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMV 350

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAER 358
           ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +  Q+       
Sbjct: 351 ATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQDDTNVLND 410

Query: 359 LFREANVSVVWEP 371
           +     V +   P
Sbjct: 411 VQTRFEVHIAEMP 423


>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
 gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
          Length = 572

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 114/429 (26%), Positives = 199/429 (46%), Gaps = 20/429 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     I + L        T VQ A +   L   D+L  A+TG+GKT+AF + + 
Sbjct: 40  KKFSELGVSSWIIQQLQTMHISTATPVQAACIPKILSGSDILGCARTGTGKTLAFAIPIL 99

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   +     +  +V +GG S+  + R
Sbjct: 100 QKLSIDP------YGIYALILTPTRELAFQIADQFSAVGKPITLKCSVIVGGRSLIHQAR 153

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +L +  HIVV TPGRL D I             ++  VLDEAD ML+  + D ++ I ++
Sbjct: 154 ELSDRPHIVVATPGRLADLINSDAEIIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFEA 213

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDN 233
            P KR+ L+ SATI+  I  L K   +        S++ + +      + V+  ++ +D 
Sbjct: 214 IPAKRQTLLLSATITNNINMLHKVSTRKPYFFEDKSKDAESTVDRLEQKFVVCPVAVKDA 273

Query: 234 AIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V +++ +  KN     ++F  T         +     F+V +L  ++ Q++R  AL  
Sbjct: 274 YLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSA 333

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R     V I TDVA+RG+D+P ++LV++  +    +  +HR GR+ RAGR G ++  + 
Sbjct: 334 FRSKTLNVIICTDVASRGLDIPHVDLVVNHNVPQCAKTYIHRVGRSARAGRFGSALSFVT 393

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAI-RERDAQRILQDPLFLDSIQGDEK-KMVDVL 407
           Q      + + +     +      + E    +    R +   ++ +SIQ   K + +   
Sbjct: 394 QYDVELLQAVEQTIGKKLEELKIQNSEKFDSKASKARQITRKIWKNSIQKASKARQITRK 453

Query: 408 LAKHDPEKI 416
           + K+  +KI
Sbjct: 454 IWKNYIQKI 462


>gi|260783339|ref|XP_002586733.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
 gi|229271857|gb|EEN42744.1| hypothetical protein BRAFLDRAFT_248039 [Branchiostoma floridae]
          Length = 433

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 108/356 (30%), Positives = 174/356 (48%), Gaps = 22/356 (6%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE+ P+++ E + ++ +   + VQ       L+ KD +  AQTG+GKT+AF L     + 
Sbjct: 80  FEHYPEILTE-IYKQKFQTPSPVQSQAWPIALQGKDFIGIAQTGTGKTLAFLLPGLIHID 138

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
            +    S    P  L ++PTRELA+Q+ +E +  Y+  G+      GG S   +   +Q 
Sbjct: 139 LQPCPRSQRGGPNMLVLSPTRELALQIEKEAKK-YSYKGIKCVCVYGGGSRRDQINLVQK 197

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I+V TPGRL D +    LNI+ +  +VLDEAD MLD+GF   I  IL      R+ +
Sbjct: 198 GVEIIVATPGRLNDLLMNGILNITSVTFLVLDEADRMLDMGFEPQIMKILLDIRPDRQTI 257

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS------------------ENRQHSDIDYRAVL 225
           M SAT  P +  LA  Y K+   VN+ S                  +      +     +
Sbjct: 258 MTSATWPPGVRRLATKYMKNPFMVNVGSLDLAVSAFNLSLFVVKVNKTLTVHSVTQYVEI 317

Query: 226 VALSDRDNAIVNILRYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           +   ++ + +             A++F   + +    +   +        + G+ SQ +R
Sbjct: 318 IDDEEKKDRVRQFCMEEMDEEDKAMIFVGRKVTADDLSSDFSLDGINCECIHGDRSQCDR 377

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
            +AL+ ++DG  R+ IATDVA+RGID+ D+  V++ +   + E  +HR GRTGRAG
Sbjct: 378 ESALEALKDGVVRILIATDVASRGIDIKDVTWVVNYDFPRDMEEYVHRVGRTGRAG 433


>gi|156093649|ref|XP_001612863.1| DEAD/DEAH box helicase [Plasmodium vivax SaI-1]
 gi|148801737|gb|EDL43136.1| DEAD/DEAH box helicase, putative [Plasmodium vivax]
          Length = 539

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 103/363 (28%), Positives = 191/363 (52%), Gaps = 8/363 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI + I +++ E G+   T++Q  +L    +++D++  ++TGSGKT  F + +   L  +
Sbjct: 138 NICEEILQSIEELGWKKPTAIQRKMLPFAFQKRDIIGLSETGSGKTACFIIPILQELREK 197

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
              F       AL I+PTREL +Q+ +  + L +   + +    GGV +  +  +L    
Sbjct: 198 RQSF------FALVISPTRELCIQIAQHFQALGSNLLINICTIFGGVDIVTQSLNLAKKP 251

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           +I+V TPGR+ DH+      N+ +LK +V DEAD++L L F   I  +L   P+KR   +
Sbjct: 252 NIIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSLDFEASINKLLLILPEKRITFL 311

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT++ ++  L K   K+ + V ++S+    S +    + + L  +   + ++  +  +
Sbjct: 312 FSATMTKSVAKLKKASLKNPITVEVSSKYSTASTLIENYIFIPLKYKYTYLCSLCFHFSS 371

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           ++ I+F +T A+  +          + + L G+L+Q +R ++L   +  R  + I+T V 
Sbjct: 372 RSIIIFANTCATAQKINFFCRNLGLKSICLHGKLTQNQRLSSLNSFKSKRYNILISTQVG 431

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+DL D+ +VI+ +L  + +  +HR GRT RAGR G S+  + Q        + +  N
Sbjct: 432 ARGLDLKDIRIVINFDL-CSCKEYIHRVGRTARAGRTGKSITFVTQYDVESFLAIEKMLN 490

Query: 365 VSV 367
             +
Sbjct: 491 KKI 493


>gi|113195544|ref|NP_001037780.1| probable ATP-dependent RNA helicase DDX52 [Danio rerio]
 gi|109150086|gb|AAI17611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Danio rerio]
 gi|182892172|gb|AAI65190.1| Ddx52 protein [Danio rerio]
          Length = 606

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 166/422 (39%), Gaps = 23/422 (5%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  FE      ++   I   +   G+   T +Q   +   + ++++L  A TGSGKT+AF
Sbjct: 162 VTTFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAF 221

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L L + L     R        AL I+PTRELA Q  REL  L    G  V +   GV  
Sbjct: 222 CLPLLAHL-----RQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEA 276

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
            ++          ++ T      ++  +     +L +V     DE              +
Sbjct: 277 VKKYGPKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQ 336

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
               F+  SSP  RR+L  +   +        N          A  +   +       + 
Sbjct: 337 LATIFLACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVG 396

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + + +  A+ N+++       +VF  +          L      V  +  + +QQ+R N 
Sbjct: 397 SENGKILAMRNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNV 456

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +   R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V 
Sbjct: 457 VSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVT 516

Query: 347 VIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              ++ +   R    + ++A   V        + I+ +   +++  P    +I+   + +
Sbjct: 517 FFTEDDKPLLRSIATVIKKAGCPVPDYMI-GFKKIKSKLKHQLVTKPPRRAAIRTTPRML 575

Query: 404 VD 405
            D
Sbjct: 576 FD 577


>gi|314933730|ref|ZP_07841095.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
 gi|313653880|gb|EFS17637.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           caprae C87]
          Length = 447

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 204/423 (48%), Gaps = 16/423 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + +A+ +  +   T +Q  I+   L+  +++  +QTG+GKT +F L L   
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNKIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
           +  +         P A+ +APTRELA Q+ +    L      V   + IGG  + ++++ 
Sbjct: 66  IDVD------LQEPQAIVVAPTRELAQQLFQAASHLCKFKQEVNVKLFIGGTDIEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +G  L+      +++DEAD M+DLG  +D+++I      + 
Sbjct: 120 CNRQPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y      V +  ++    +I++  +    + + +  +N++ 
Sbjct: 180 HIAVFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++R + +     L +   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLSIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDP 413
            +     NV +       ++A   R  ++   D L  +    ++   K+ V     K   
Sbjct: 360 DKGYHFENVDIKNGELKPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK 419

Query: 414 EKI 416
           +++
Sbjct: 420 QEV 422


>gi|302846090|ref|XP_002954582.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
 gi|300260001|gb|EFJ44223.1| hypothetical protein VOLCADRAFT_82854 [Volvox carteri f.
           nagariensis]
          Length = 424

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 121/366 (33%), Positives = 180/366 (49%), Gaps = 14/366 (3%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            +AL+ RG  +L  VQ  +  P +  +DV+  A+TGSGKT+AF L +   LL EN +  P
Sbjct: 1   MDALAARGIYSLFPVQAQVFEPIMNGRDVVCRAKTGSGKTLAFALPVVENLLEENGKSRP 60

Query: 72  ASA--PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
                P  L +APTRELA QV RE E +     + V    GGVS+  + R L+NG  +VV
Sbjct: 61  RKGRAPRCLVLAPTRELANQVSREFESV--CPNLKVDSFYGGVSISPQIRSLENGVDVVV 118

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI---------LDSSPKKR 180
           GTPGR+ D +    L + +++  VLDEAD+MLD+GF  D+E I           +     
Sbjct: 119 GTPGRIIDLLERGCLKLDNIRYAVLDEADQMLDMGFEQDMERILGAIPEGKERQTLLFSA 178

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +  +  +++                      +     +        +S     +     
Sbjct: 179 TLPKWVKSVAKRYQNNPLTIDLVGEENTGKLADTIRLLVQQVDGAQKMSALQGLLAMYGN 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   AI+F +T+A        + E      AL G++SQ +R  AL + RDG+    +A
Sbjct: 239 TAGGGKAIIFVNTKAKADEVNMAVNEFASCD-ALHGDISQAQREKALALFRDGKYNCLVA 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+P ++LV H +L  + E  LHRSGRTGRAG+ G +V +  +   R    + 
Sbjct: 298 TDVAARGLDIPSVDLVAHFDLPQDNEAFLHRSGRTGRAGKTGTAVVLFTEREARSLALIL 357

Query: 361 REANVS 366
           R   V+
Sbjct: 358 RATKVT 363


>gi|94733898|emb|CAK11017.1| novel protein [Danio rerio]
          Length = 505

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 200/409 (48%), Gaps = 12/409 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P V+   L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L ++
Sbjct: 98  FPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QS 156

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SP S P  L + PTRELA+Q+  + +  +     +  A+ +GG+ +  +   L++  
Sbjct: 157 ESASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNI 215

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ 
Sbjct: 216 KIVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLT 275

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242
           SATI      LA+    D V + I  +N+  +++          +   +   I+N  + +
Sbjct: 276 SATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLY 335

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +       +      V        VA+  +  Q ER+  ++ + +G+  V I+T 
Sbjct: 336 QPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTG 395

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++  +  N +R    + + 
Sbjct: 396 ILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKR 455

Query: 363 ANVSVVWEPA-----PSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVD 405
              +    P      P +   + RD Q+  Q     L  IQ  +K+   
Sbjct: 456 VKPTGSILPPQILNSPHLHEQQRRDKQKNTQHTHSILHLIQQHDKRSAR 504


>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
 gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
          Length = 829

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 110/441 (24%), Positives = 186/441 (42%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L     R 
Sbjct: 48  ELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPMFEKL----QRR 103

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 104 EPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 163

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+M+MFSAT+
Sbjct: 164 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVMFSATL 223

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-- 247
              +   A+    D V + +  E++    +  + +     DR  A+V +L+Y   + A  
Sbjct: 224 PKLLVEFARAGLSDPVLIRLDVESKLPETLALKFLYCRPDDRYTALVVLLKYVIPQQAQT 283

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L +      ++   L    R          +  V I TDVAARG
Sbjct: 284 VVFAGTQHHVELISYILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLIVTDVAARG 343

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 344 IDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 403

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + +A+       AG LR     
Sbjct: 404 N------------------INDSSSIGTIPQDLLEEEYLSVAEIKKSHHIAGVLRTSENA 445

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   P +      R + 
Sbjct: 446 YKKYLSSRPTASTDANARAKK 466


>gi|296333328|ref|ZP_06875781.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675167|ref|YP_003866839.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149526|gb|EFG90422.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413411|gb|ADM38530.1| ATP-dependent RNA helicase; cold shock [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 438

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 191/383 (49%), Gaps = 14/383 (3%)

Query: 1   MKI--FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           MK   FE   +   I +A+   G+   T +Q+ ++   L+++ V+  +QTG+GKT A+ L
Sbjct: 1   MKETKFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLL 60

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVS 113
            L + +    D          +  APTRELA Q+ +E   +      + +     IGG  
Sbjct: 61  PLLNKIDPAKD------VVQVVITAPTRELANQIHQEALKITQGEEGSQIRSKCFIGGTD 114

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             +    L+   H+VVGTPGR+ D I+ + L++   +++V+DEAD MLD+GF  D+++I 
Sbjct: 115 KQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFIADVDYIG 174

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P+  +ML+FSATI   +    K Y ++    ++  +    + I++  +     D+D 
Sbjct: 175 SRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDK 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + +I+ +      IVF +T+ +     + L     ++  L G L+ +ER   ++ + D 
Sbjct: 235 LLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGLKIGLLHGGLTPRERKKVMKQINDL 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                IATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G ++ +   + +
Sbjct: 295 EFTYVIATDLAARGIDIKGVSHVINYELPDDLDFYIHRVGRTARAGSSGQAMTIYELSDE 354

Query: 354 RRAERLFREANVSVVWEPAPSVE 376
               RL +   +   +      E
Sbjct: 355 DALARLEK-MGIEFDYLELEKGE 376


>gi|209881795|ref|XP_002142335.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
 gi|209557941|gb|EEA07986.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
          Length = 498

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 158/382 (41%), Gaps = 18/382 (4%)

Query: 2   KIFENI-----PQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFG 55
           K FE+I     P  + + + +   Y   T VQ  ++   L   D+L  + TGSGKT+++ 
Sbjct: 102 KSFEDIMKCGVPSWVIDNIRDILKYKKPTPVQAQVIPLILSGSDILAQSPTGSGKTLSYL 161

Query: 56  LALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
           L +   L  E       +   +L ++PTRELA Q+ RE++ L                V 
Sbjct: 162 LPILGKLTNEK------TYCKSLILSPTRELAQQIVREVKVLLDTRAKKYRCRYICGKVK 215

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E+        I V TP R  +  +   +N+     +VLDE D++LD+GF   I+ I+  
Sbjct: 216 KEQESRTKRLDIAVSTPFRFAEICKSGIMNLKECSFIVLDEVDKLLDMGFSPQIDEIIAH 275

Query: 176 SPKK-----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
           S        + +   +   +          +               +       +   S 
Sbjct: 276 SNVISNGKVQVVAFSATLPNNVKDLAESIMKYPIEVTVGHRLAASKTIKQELICVTKESG 335

Query: 231 RDNAIVNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +  +   +++        ++F +++ +  +    +      V  +  ++++ +R N ++ 
Sbjct: 336 KLESFRQLIKQGRINLPVLLFTNSKENAQKLFSKIVFDNLLVDMIHSDMAKTKRDNIVKK 395

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R G+  V I TD+ ARG+D  ++  VI+ +        +HR GR+GRAGR G ++    
Sbjct: 396 FRTGQIWVLICTDLIARGVDFKNVATVINYDFPQTSTIYIHRIGRSGRAGRLGHALTFFT 455

Query: 350 QNMQRRAERLFREANVSVVWEP 371
            N   + + + +    S +  P
Sbjct: 456 LNDLPKLKYIAKVMKSSGIEVP 477


>gi|118777945|ref|XP_308366.3| AGAP007511-PA [Anopheles gambiae str. PEST]
 gi|116132145|gb|EAA04660.3| AGAP007511-PA [Anopheles gambiae str. PEST]
          Length = 816

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 88/363 (24%), Positives = 163/363 (44%), Gaps = 4/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + + GY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L    
Sbjct: 45  LSAPVLKGILKMGYKIPTPIQRKTIPIILDGRDVVAMAKTGSGKTGCFLIPMFERLKQRE 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L     +   + +GG S+  +   +     
Sbjct: 105 AKA--GGGARALILSPTRELAIQTYKFIKQLGRFMDLKAILVLGGDSMDSQFAAVHTLPD 162

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGR         L ++ ++  V DEAD + ++GF + +   +   P+ R+M++FS
Sbjct: 163 VIVATPGRFLHLCVEMDLKLNSVQYCVFDEADRLFEMGFGEQLTETIKRLPESRQMVLFS 222

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +   A       V + +  E++    +D + +    ++R   ++ +LR      
Sbjct: 223 ATLPKLMVDFATAGLCQPVLIRLDVESKIPDTLDLKYIYCRPAERYATLLVLLREVIPST 282

Query: 247 A--IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           A  ++F  T+  V   + +L +       +   L    R          +  V + TD+A
Sbjct: 283 AQTVIFAGTQHHVELISLMLTKAGVPNSHVYSGLDASARKINTAKFTHRKVNVLVVTDIA 342

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+      P+  +HR GR  RAGR GM+  +   +       L    N
Sbjct: 343 ARGLDIPTLDFVINLHFPGKPKLFIHRVGRCARAGRSGMAYTIFSNDDVAHLIDLHMFLN 402

Query: 365 VSV 367
             +
Sbjct: 403 RPL 405


>gi|322818915|gb|EFZ26192.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
          Length = 794

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE++     +   +++ GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 338 VESFEDLYVEPALALNVAKCGYKQPTPVQRYGIPVCLNGDDLMACAQTGSGKTAAFLVPV 397

Query: 59  ASTLLAEN--DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              +L           S P+A+ +APTRELA+Q+  E+  L  +T +   V  GG     
Sbjct: 398 VHYILKHGVSPARERVSYPIAVIMAPTRELALQIYDEVRKLTFRTDIFYDVVYGGTPYPT 457

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF----- 171
              +      I+V  PGRL D      ++ S +K +VLDEAD ML++GF + IE+     
Sbjct: 458 RFEN-----DILVACPGRLKDIFDRGIVSFSRVKFLVLDEADRMLEMGFEEQIEYLVASR 512

Query: 172 --ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
              +  + +++ ++  +      +    +  ++    + +        +I  + V V  S
Sbjct: 513 YTDMPQTTERQTLMFSATFPQRILNLAKRYLRQHYYLLTVGRVGSTTKNITQKIVRVQES 572

Query: 230 DRDNA-IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           ++ +     I +       ++F  T+ +       L         + G+  Q +R  AL+
Sbjct: 573 EKMDKLFEVIYQQKQTDLVLIFVETKRAAEELHYALKSEGIPSATIHGDRRQFDRERALR 632

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +DG   + +ATDVA+RG+D+P++  VI  +L    ++  HR GRTGRAG KG +    
Sbjct: 633 DFKDGITPILVATDVASRGLDVPNVAHVIQYDLPKEMDDYTHRIGRTGRAGNKGTATSFY 692

Query: 349 PQNMQRRAERLFREANVSVVWEPA 372
            +N +     L+          P 
Sbjct: 693 NKNNRNLTVDLYNYLKEHEQDIPL 716


>gi|297529359|ref|YP_003670634.1| DEAD/DEAH box helicase [Geobacillus sp. C56-T3]
 gi|297252611|gb|ADI26057.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. C56-T3]
          Length = 436

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 120/427 (28%), Positives = 199/427 (46%), Gaps = 27/427 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P    I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+ L +   
Sbjct: 6   FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRE 117
           +  E           A+  APTRELA Q+  E   +         +            + 
Sbjct: 66  IKPERAEV------QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L    HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    P
Sbjct: 120 LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  +ML+FSATI   +    K Y ++   V++  +   + +I++  + +   ++   + +
Sbjct: 180 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEHVLIPLRGREKTKLLRD 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +    AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   + 
Sbjct: 240 VLLSYNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIA 359

Query: 358 RLFREANVSVV--------WEPAPSVEAIRERDAQR------ILQDPLFLDSIQGDEKKM 403
           RL +   +S V        W+  P      +R  ++      +         ++   KK 
Sbjct: 360 RLEK-MGISFVHRDLVRGEWKELPPWNRRSKRAGEKDDELALLFAKLKKTKQVKPGYKKK 418

Query: 404 VDVLLAK 410
           +   L K
Sbjct: 419 LRAELEK 425


>gi|326202886|ref|ZP_08192753.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
 gi|325986963|gb|EGD47792.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
           DSM 2782]
          Length = 439

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 194/385 (50%), Gaps = 10/385 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++FE   + + + EAL +      T +Q+  +  +L+ +DV++ + TG+GKT+A+ L L 
Sbjct: 3   QLFEGMELDKTLVEALKKESITVPTDIQQKAIPEELKNRDVILHSSTGTGKTLAYLLPLF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PT ELA+QV R++E L   + +          V+  R+
Sbjct: 63  MKLSVDKKEM------QALILVPTHELAIQVERQIELLSQNSEIKATSTPIIGDVNIMRQ 116

Query: 120 DLQNG--AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +     HI+VGT GR+ + I+ K ++   +K +++DEAD +LD    D I+ ++ ++ 
Sbjct: 117 MDKLKLKPHIIVGTAGRILELIQKKKISAHTIKTIIIDEADRLLDDYNLDSIKAVIKTTL 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+++M SATIS      A    K+ + +   S+      I++   +    ++ + +  
Sbjct: 177 KERQIVMCSATISKKTVERAMPLMKEPLIIESKSDMGVPDAIEHLYFVAEQREKIDVLRK 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R    K AI F +    +    + L  H  +   + G   + +R   +   ++G+ ++
Sbjct: 237 LVRMINPKKAIAFFANSEDIFVSEEKLRYHKLKAGGIHGSHIKSDRKKTMDDFKNGKLQL 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+D+AARG+D+ D+  + +  +     + LHR GRTGR G+ G+++ ++ +      +
Sbjct: 297 LIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRVGRTGRNGKPGVAISIVTEKEIEFMK 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERD 382
           +  +E  + ++ +   + + +  + 
Sbjct: 357 KFEKELKIKIIPKSMSNGKIVEYKK 381


>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
 gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
          Length = 826

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 103/441 (23%), Positives = 175/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 48  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 103

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 104 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 163

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+M+MFSAT+
Sbjct: 164 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSTRQMVMFSATL 223

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 224 PKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPQESQT 283

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L        ++   L    R          +  V I TDVAARG
Sbjct: 284 VVFAGTQHHVELISYILTGAGISNTSVYSSLDPAARKINTAKFVSKKVSVLIVTDVAARG 343

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 344 IDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 403

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + + +       AG LR     
Sbjct: 404 N------------------INDSTAMGTIPQDLLEEEHLTVTEIKKSHHIAGVLRTSENA 445

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 446 YKKYLSSRPVASTDANARVKK 466


>gi|149927779|ref|ZP_01916031.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
 gi|149823605|gb|EDM82835.1| putative ATP-dependent RNA helicase [Limnobacter sp. MED105]
          Length = 617

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 154/580 (26%), Positives = 237/580 (40%), Gaps = 40/580 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  +   + +AL+       T VQ+ ++       D++VS+QTGSGKT  F L +  
Sbjct: 2   SFDDMGLAAPLLQALNALNITAPTLVQQEVVPLGKDGGDLMVSSQTGSGKTFGFLLPVMH 61

Query: 61  TLLA-ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            ++  E       + P  L + PTRELA QV ++   L   T  V    + G   + ++ 
Sbjct: 62  RMMTGEQSPMEMLAGPECLVLCPTRELAQQVSQDAINLVKFTKGVRVATVVGGMPYGKQM 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
               GA IVVGTPGRL D  +   LN+S +  +++DEAD MLDLGF +D+E I      +
Sbjct: 122 ASLRGARIVVGTPGRLLDLAQQGKLNLSTVTTLIVDEADRMLDLGFSEDLEAIDQLCGNR 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + LMFSAT +  I  LA+N   +  R+ +A++N  ++DI  + +          ++N  
Sbjct: 182 IQTLMFSATFAKRIIGLAENIMNNPKRIEMAAQNEANTDIAQKLMWADNRGHKRKLLNHW 241

Query: 240 RYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
             H     A+VF ST+       + LA+   +  AL G + Q  R+  L  +R G  +V 
Sbjct: 242 LEHPDMVQAVVFTSTQIDAENLARDLADEGVRACALHGGMPQVVRNRRLASVRKGDIKVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +  VI+  +    E+ +HR GRTGRAGR G++V +           
Sbjct: 302 VATDVAARGLDVPAISHVINYGMPMKSEDYVHRIGRTGRAGRSGVAVTLAEACDIISVRG 361

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + R  N  +  E    +E           Q P       G  +                 
Sbjct: 362 IERFINSRIPEEQVEGLEP-----RGNFTQAPRGGKPSGGRGRSGGGGYAGNSGGRSEGR 416

Query: 419 GF---LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWF--SLSV 473
            F    R       +  +  P      R      S   K   G R ++     F    S 
Sbjct: 417 SFGGGERKSYGDKPSYGDRKPFEAREERSFGERKSYGDKPAFGERKSYGDKPAFGERKSF 476

Query: 474 GSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQL 533
           G ++  EAR              +S G                 V    R+    K    
Sbjct: 477 GDRKPYEAREE------------RSFGD------------RKPFVQGEERSFGDRKPFGD 512

Query: 534 KYLGGEKPDFRGYKSSGFKSKNSQDG--ATKRFKRFKGAS 571
           +   G+KP F   K  G +           ++   F G S
Sbjct: 513 RKPFGDKPSFGDRKPFGERKSFGDKPSFGDRKPSGFSGNS 552


>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
 gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
          Length = 540

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 122/379 (32%), Positives = 193/379 (50%), Gaps = 6/379 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     +   L  RG+     +Q A L   L  +DVL   +TGSGKT+AF L L  
Sbjct: 24  TFAELGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLVQ 83

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A+ D+  P   P+ L +APTRELA+Q+   +E L     + V    GGVS   + + 
Sbjct: 84  RL-AQQDKARPG-HPIGLVLAPTRELALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKA 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  +VV  PGRL D +    +++  ++  VLDEAD M DLGF  ++  IL ++P++ 
Sbjct: 142 LKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHMADLGFLPNVRRILRATPQRG 201

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   + TL K +  D ++ ++         + +R  +VA     + IV  L 
Sbjct: 202 QRLLFSATLDNGVDTLVKEFLHDPLQHSVDPSTSPVDAMTHRVWMVADKTAKDGIVRRLA 261

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  + F  T+    R  + L +     V L G +SQ  R  A++    G+  V +A
Sbjct: 262 SGEGQRIL-FTRTKHLARRLARKLVQAGIPAVELQGNMSQNARERAMRAFSTGQVHVMVA 320

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGID+  +ELV+H +  +  +  LHRSGRT RAG  G  + ++    +   + L 
Sbjct: 321 TDIAARGIDVSGVELVVHVDPPAEHKAYLHRSGRTARAGAAGSVITLVLPEQKHDVQVLL 380

Query: 361 REANVSVVWEPA-PSVEAI 378
           ++A +    E   P  +A+
Sbjct: 381 KKARIRADIERIRPDDDAV 399


>gi|320593758|gb|EFX06167.1| dead box RNA helicase [Grosmannia clavigera kw1407]
          Length = 857

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 182/394 (46%), Gaps = 14/394 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++P  +     L +  +  LT +Q   +   LR  D+L +A+TGSGKT+AF + + 
Sbjct: 51  TNFSDVPLSEPTKMGLRDSHFETLTDIQSKAIPAALRGCDILGAAKTGSGKTLAFLVPVL 110

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R++      AL I+PTREL+VQ+   L  +         + IGG S+  E  
Sbjct: 111 EKLY--RARWTEYDGLGALIISPTRELSVQIFEVLRKVGRHHRFSAGLVIGGKSLKEEAE 168

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     +V      L    +   L +++L+ +VLDEAD ++D+GF+  ++ +++  P+ 
Sbjct: 169 RVGRMNILVCTPGRMLQHLDQTASLEVNNLQMLVLDEADRIMDMGFQSAVDALVEHLPQG 228

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT S  ++          + + V+ A+     S +    V+  L+++ + +  
Sbjct: 229 RQTLLFSATQSKRVSDLARLSLKDPEYIAVHEAAAAATPSQLQQHYVVTPLAEKLDTLYG 288

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            +R +     IVF S+   V    + +      +  L     Q++ +    +      + 
Sbjct: 289 FIRANLKCKMIVFFSSGKQVRFAYEAIRHLQPGIQLLHLHGRQKQVARLEIISRFSAAKH 348

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
               ATDV ARG+D+P ++ V+ A+   + +  +HRSGRT R    G ++  +  + +  
Sbjct: 349 ACLFATDVVARGVDIPMVDWVVQADCPEDADTYIHRSGRTARYESAGKAILFLDPSEEDG 408

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             R  ++ NV +          +RE+  + I + 
Sbjct: 409 MVRRLQQKNVPIHKVN------VREKKKKSIREQ 436


>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
 gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
          Length = 827

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 EPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 224

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 225 PKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYVIPVESQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  ++  +       L    N   
Sbjct: 345 IDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   L +I  D  +   + +         AG LR     
Sbjct: 405 N------------------IHDSSALGTIPQDLLEEEHLTVTDIKNSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|45768538|gb|AAH67608.1| Ddx52 protein [Danio rerio]
          Length = 501

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 94/422 (22%), Positives = 166/422 (39%), Gaps = 23/422 (5%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  FE      ++   I   +   G+   T +Q   +   + ++++L  A TGSGKT+AF
Sbjct: 57  VTTFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAF 116

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L L + L     R        AL I+PTRELA Q  REL  L    G  V +   GV  
Sbjct: 117 CLPLLAHL-----RQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEA 171

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
            ++          ++ T      ++  +     +L +V     DE              +
Sbjct: 172 VKKYGPKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQ 231

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
               F+  SSP  RR+L  +   +        N          A  +   +       + 
Sbjct: 232 LATIFLACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVG 291

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + + +  A+ N+++       +VF  +          L      V  +  + +QQ+R N 
Sbjct: 292 SENGKILAMRNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNV 351

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +   R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V 
Sbjct: 352 VSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVT 411

Query: 347 VIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
              ++ +   R    + ++A   V        + I+ +   +++  P    +I+   + +
Sbjct: 412 FFTEDDKPLLRSIATVIKKAGCPVPDYMI-GFKKIKSKLKHQLVTKPPRRAAIRTTPRML 470

Query: 404 VD 405
            D
Sbjct: 471 FD 472


>gi|50955710|ref|YP_062998.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50952192|gb|AAT89893.1| ATP-dependent RNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 399

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 195/381 (51%), Gaps = 9/381 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA------ 64
           I  AL+E G      +Q A     +  +DVL   +TGSGKT+AFG  +   L+       
Sbjct: 15  IVRALAELGAETPFPIQAATAPEIVAGRDVLGRGRTGSGKTIAFGAPMVERLMRLWAESG 74

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +     AP AL +APTRELA+Q+ R ++ +    G+      GGV   R+   LQ 
Sbjct: 75  KSGGKRQTGRAPRALILAPTRELALQIDRTVQPIARSVGLFTTQIYGGVPQGRQVGALQR 134

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+GTPGR+ D +    L++S +   VLDEAD M D+GF + ++ IL  +    + L
Sbjct: 135 GVDIVIGTPGRIEDLVEQGRLDLSQVVISVLDEADHMCDIGFLEPVQRILRETVDGGQKL 194

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT+   +  L   +  D     +A E++  S ID+R ++V   ++    +       
Sbjct: 195 LFSATLDSGVAQLVDEFLVDPSVHEVAGEDQDSSAIDHRVLVVEHREKGA--IIEQLADR 252

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  TRA        L +     V+L G+L+Q  R+  L  +  GR  V +ATDV
Sbjct: 253 DGKTLIFARTRAFAEMLADNLEDAGIPAVSLHGDLNQSRRTRNLAQLTSGRVSVLVATDV 312

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGI + D++LVI A+     +  LHRSGRTGRAG++G  V +IP+  QRR   L + A
Sbjct: 313 AARGIHVDDIDLVIQADAPDEYKTYLHRSGRTGRAGKRGTVVTLIPRQRQRRMGELLQRA 372

Query: 364 NVSVVWEPAPSVEAIRERDAQ 384
            +   + PA   + I    AQ
Sbjct: 373 EIEADFVPAAPGDGILSAIAQ 393


>gi|296412374|ref|XP_002835899.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629696|emb|CAZ80056.1| unnamed protein product [Tuber melanosporum]
          Length = 547

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 182/371 (49%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L     + A+ 
Sbjct: 133 FPSYVMNEVKAQGFAAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQ- 191

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +P   P+ L +APTRELAVQ+ +E+      + +      GGV    + RDL  G  
Sbjct: 192 PLLAPGDGPIVLVLAPTRELAVQIQQEVAKFGKSSRIRNTCVYGGVPKGPQVRDLSRGVE 251

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D +     N+  +  +VLDEAD MLD+GF   I  IL      R+  M+S
Sbjct: 252 VLIATPGRLIDMLETNKTNLRRVTYLVLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWS 311

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRDNAIVNILRYH 242
           AT    +  LA ++  D ++VNI S     +    +           DR    +  +   
Sbjct: 312 ATWPKEVRQLASDFLNDFIQVNIGSLELSANHNIQQIVEVINDYDKRDRLIKHLEKVMDD 371

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  T+ +    T+ L +  +  +A+ G+  Q ER   L   + G++ + +ATD
Sbjct: 372 KNSKCLIFTGTKRTADDITRFLRQDGWPCLAIHGDKQQTERDWVLNEFKTGKSPIMVATD 431

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
           VA+RGID+ ++  VI+ +  +N E+ +HR GRTGR G +G ++     N  ++A  L   
Sbjct: 432 VASRGIDVRNITHVINFDYPNNSEDYVHRIGRTGRGGARGTAITFFTTNDAKQARDLLTV 491

Query: 360 FREANVSVVWE 370
            REA   +  E
Sbjct: 492 LREAKQQIPPE 502


>gi|198474199|ref|XP_001356589.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
 gi|198138291|gb|EAL33653.2| GA10248 [Drosophila pseudoobscura pseudoobscura]
          Length = 828

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 190/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P  I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 405 SGFPPEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 464

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 465 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETIKFGQPLGIRTVVVVGGLSREEQGFRL 524

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 525 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 584

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA++Y +    V I S  +  
Sbjct: 585 KPDTEEAEDENKLMENFYTKKKYRQTVMFTATMPPAVERLARSYLRRPSTVYIGSMGKPT 644

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 645 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 704

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++ + E+  HR GRTG
Sbjct: 705 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKSIEDYTHRIGRTG 764

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 765 RAGKTGCAISFVTKDDSGLFYDL 787


>gi|643070|gb|AAA80219.1| ribosomal DEAD box protein [Leishmania braziliensis]
          Length = 403

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 181/375 (48%), Gaps = 11/375 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P  Q +   +   G+   +S+Q+  + P  R  D++  AQ+G+GKT AF + L  
Sbjct: 27  SFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQ 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRE 117
            L   ++          L ++PTRELA+Q    +  +          C        V  +
Sbjct: 87  RLDFRHNLI------QGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDD 140

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R LQ G  + VGTPGR+ D I+   L    L+ +VLDEADEML  GF D I  I    P
Sbjct: 141 LRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLP 200

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++ +FSAT+   +  L K + +D VR+ +  E+     I    + V    + + +++
Sbjct: 201 KDIQVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMD 260

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +        +++F +TR  V    + L +    V ++  E+ + +R   +   R G +RV
Sbjct: 261 LYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRV 320

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TD+ ARGID+  + +VI+ +L +N EN LHR GR GR G KG+++  + +       
Sbjct: 321 LVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLH 380

Query: 358 RLFREANVSVVWEPA 372
            +    +  +   P 
Sbjct: 381 EIEGHYHTQIDELPV 395


>gi|333026815|ref|ZP_08454879.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332746667|gb|EGJ77108.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 492

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 186/364 (51%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 69  FADLDMPKALEAALGAQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 + + A  PLAL + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 129 ---TAGKRAEAGQPLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQATAL 185

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 186 RRGAEVLVATPGRLKDLIDRGHCRLDQVAVTVLDEADQMTDMGFMPQVTALLDQVRPGGQ 245

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+    +     
Sbjct: 246 RMLFSATLDRNVDLLVRRYLNDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--IATEIA 303

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T+ L     +  AL G  SQ +R+  L+  + G   V +AT
Sbjct: 304 ARDGRVLLFLDTKHAVDRLTEHLLRSGVRAAALHGGKSQPQRTRTLEQFKTGHVSVLVAT 363

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAGR G    ++  N +R   RL  
Sbjct: 364 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGRSGRVATLVTPNQRRSMARLMA 423

Query: 362 EANV 365
              V
Sbjct: 424 AVGV 427


>gi|218890286|ref|YP_002439150.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
 gi|218770509|emb|CAW26274.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
          Length = 446

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 63  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P +R
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAER 182

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELSENVRQQVITADDVAHKEQLLQWL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 362

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 363 VERYLKQNFERRNIKELKA 381


>gi|194367446|ref|YP_002030056.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           R551-3]
 gi|194350250|gb|ACF53373.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 574

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 5/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ +
Sbjct: 11  FSSFE-LHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVN 69

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL            P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R 
Sbjct: 70  RLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQRE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ G  +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P+
Sbjct: 130 ILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 189

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +       FSAT+S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++
Sbjct: 190 RTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLL 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        +VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  
Sbjct: 250 GLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +      
Sbjct: 310 ILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 369

Query: 357 ERLFREANVSVVWEPA 372
             +       +  EP 
Sbjct: 370 PDIEAYIEQKIPSEPV 385


>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
 gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
          Length = 829

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 102/441 (23%), Positives = 174/441 (39%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 48  ELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 103

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     I+V
Sbjct: 104 EPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDIIV 163

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L   P  R+ +MFSAT+
Sbjct: 164 ATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATL 223

Query: 190 SPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
              +   A+        +R+++ S+      + +             ++           
Sbjct: 224 PKLLVEFARAGLSDPVLIRLDVESKLPDTLSLKFLYCRPDDRYTALVVLLKYVIPQEAQT 283

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L +      ++   L    R          +  V I TDVAARG
Sbjct: 284 VVFAGTQHHVELISFILTQAGISNTSVYSSLDPAARKINTAKFASKKVSVLIVTDVAARG 343

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 344 IDIPSLDYVVNLHFPGVPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 403

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + + +       AG LR     
Sbjct: 404 N------------------INDNSSIGTIPQDLLEEEYLTVNEIKKSHHIAGVLRTSENA 445

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   P +      R + 
Sbjct: 446 YKKYLSSRPTASTDANARAKK 466


>gi|146161285|ref|XP_977099.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila]
 gi|146146797|gb|EAR86377.2| Type III restriction enzyme, res subunit family protein
           [Tetrahymena thermophila SB210]
          Length = 440

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 176/388 (45%), Gaps = 15/388 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F    +   I +   + GY N T +QE  + P LR++ V+ +A+TGSGKT  F   +
Sbjct: 1   MHPFAKLGLDSWIQKTCDKVGYQNPTKIQELAIPPLLRKQHVIANAETGSGKTATFAFPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           A+ +   RELA+Q+  +     +   + V+  +GGV  +++ 
Sbjct: 61  LQDLAKDP------FGVFAIVLTANRELAMQISEQFTIFGSSLNLRVSTLVGGVDFNKQL 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDI----EF 171
            +L+   HIVVGTPGR  D I         I ++K +VLDEAD + +    +DI    EF
Sbjct: 115 SELERIPHIVVGTPGRTLDMIDKSPVLKEYIENVKYLVLDEADRLFEDSIIEDIQSILEF 174

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I             +   +               R  +  + +    +  + VLV    +
Sbjct: 175 IPQEKQIILATATINDDFNDKKLNEILKTNVKFERFCVNQQKKVVQTLKQKFVLVPEMVK 234

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           D   +N+L      + I+F +   +      +L +  F   +L   L Q +R + L+  +
Sbjct: 235 DQNFINLLNKFKGISMIIFVNKCRTCHFINALLNQLEFSSTSLHSGLKQGQRISHLKTFK 294

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
              A + +ATDVA+RG+D+P ++LVI+ ++  N ++ +HR GRT R G++G+++ ++ Q 
Sbjct: 295 SQAANILVATDVASRGLDIPTVDLVINYDIPKNSDDYIHRVGRTARKGKRGLAISIMTQY 354

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIR 379
             +    + +     +        EA+ 
Sbjct: 355 DVQLILNIEKNIGEKLEELKVDEEEALE 382


>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
 gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides brasiliensis
           Pb01]
          Length = 835

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 104/362 (28%), Positives = 174/362 (48%), Gaps = 9/362 (2%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+  ++ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 313 KSFQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPIL 372

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELAVQ       L   T +     +GG S+  +  
Sbjct: 373 ERLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQEN 429

Query: 120 DLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 430 ILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPK 489

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAI 235
            R+ ++FSAT++  I  L +      VR+ + ++ +    +              R   +
Sbjct: 490 SRQTMLFSATMTNTIDKLIRVGLNRPVRLMVNAQKQTVGTLVQEFVRLRPGREDKRLGYL 549

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V + +       I+F   +    R   +      +   L G +SQ++R  +++  RDG+ 
Sbjct: 550 VTLCKTVYKDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFRDGKV 609

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 610 SFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 669

Query: 356 AE 357
            +
Sbjct: 670 VK 671


>gi|326795324|ref|YP_004313144.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
 gi|326546088|gb|ADZ91308.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
           MMB-1]
          Length = 403

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 105/379 (27%), Positives = 183/379 (48%), Gaps = 7/379 (1%)

Query: 3   IFENIPQ--VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     I +A+S+ G  + T +Q   +   L  +D+L SA TG+GKT+AF   +  
Sbjct: 2   SFEDLDLDFTIEQAISDMGLTSPTPIQIQAIPAALDAQDILASAPTGTGKTIAFAAPIIQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L  ++  +   AP AL +AP+RELA Q+ + +E L   T + + + +GG     +++ 
Sbjct: 62  HILDRDEEST--LAPKALILAPSRELARQIFQVIEKLLTHTRIQLQLIVGGTPYGNQQKQ 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     I+V TPGRL +  +   L++S +   V+DEAD MLD+GF D +  I    P  +
Sbjct: 120 LSEPCDILVATPGRLIELDQKGWLDLSDVSMFVIDEADRMLDMGFIDAVTSIAKELPAHQ 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIAS---ENRQHSDIDYRAVLVALSDRDNAIVN 237
            +   +      +   A    K+       S    +           +     ++  + +
Sbjct: 180 TLFFSATIEGEKMGRFASTLLKEDATQIQLSESVRSVPSQITQLAMRVDDEPHKEALLKH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL       A VF S +  V  + + +     +   L G++ Q +R++ L+ M+ GR +V
Sbjct: 240 ILEKDETNQAAVFVSNKDHVDIWVQKIRNWGLRCDGLHGDMKQGDRNDHLKQMKKGRLKV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+DLP++  VI+  L    +  +HR+GR  R G  G    ++  N     E
Sbjct: 300 LVATDVASRGLDLPEINTVINVRLPRKADAYVHRAGRASREGNPGKCYSLVDINDLPMME 359

Query: 358 RLFREANVSVVWEPAPSVE 376
           ++ R   V+V +     +E
Sbjct: 360 KIQRYMQVAVKFTKIEGLE 378


>gi|322815571|gb|EFZ24206.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 608

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 98/418 (23%), Positives = 180/418 (43%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  AL  +  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +  
Sbjct: 119 NLNPHIVTALENDFKFGELTGIQGRCVPAALSGRDLLAEAKTGSGKTLAFLIPIVEII-- 176

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL--- 121
               F P +   A+ I PTREL +Q+   L  L       +          R +      
Sbjct: 177 SRAGFRPKNGTAAVIIGPTRELCLQIEGVLLKLLKHFNGSITFLCCIGGQSRNQEAFKLV 236

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L            +L  + +DEAD +LD GF +D+  I+   PKKR+
Sbjct: 237 NGMMIVIASPGRLLDHLKLTADWLTKNLLVLAVDEADRVLDNGFEEDMREIVSLLPKKRQ 296

Query: 182 MLMFSATISPAITTLAKNYQKDAV---RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +FSAT +  +  LA+           +    E      ++   V+     R   + + 
Sbjct: 297 TFLFSATQTTRVEQLARISFYRPPLLISMKRREEKATVDTLEQGYVMCPSEQRLLVLYHF 356

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V 
Sbjct: 357 VKRNLKKKMIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVL 416

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
             TDVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++  +    +   + 
Sbjct: 417 FTTDVAARGLDIPHVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEKLFLKY 476

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L+ +A+V+V       +  +++   +++ Q       ++   ++  +  L  +   ++
Sbjct: 477 LYDDAHVTVSEYTF-DLSKVKQGVCEQLEQLVSTNYYLRTSARQAYEGYLLSYSSSQL 533


>gi|254567599|ref|XP_002490910.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|238030707|emb|CAY68630.1| Putative ATP-dependent RNA helicase of the DEAD-box family involved
           in ribosomal biogenesis [Pichia pastoris GS115]
 gi|328352552|emb|CCA38951.1| hypothetical protein PP7435_Chr2-1277 [Pichia pastoris CBS 7435]
          Length = 498

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 192/377 (50%), Gaps = 15/377 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
             + + I + I   +S+  +   T++Q       L+  DV+  A+TGSGKT AFG+   S
Sbjct: 95  FSMLQGIEEKIKNKISQ--FDKPTTIQAVSWPYLLKGNDVIGVAETGSGKTFAFGVPAIS 152

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L +N +         L I+PTRELAVQ+   L+ L    G+      GGV    ++R 
Sbjct: 153 HVLQKNSK-----GLQVLVISPTRELAVQIYDNLKQLTDLCGLECCCIYGGV-SKDDQRR 206

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +  V+ TPGRL D +    ++++ +  +VLDEAD ML+ GF + I+ I+ +    R
Sbjct: 207 QVKQSQCVIATPGRLLDLMEEGSIDLTGINYLVLDEADRMLEKGFEEAIKSIMANVNTDR 266

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASEN----RQHSDIDYRAVLVALSDRDNAIV 236
           + LMF+AT    +  LA ++ K  V+V +   +     +        +     ++    +
Sbjct: 267 QTLMFTATWPKEVRELASHFMKSPVKVTVGDRDELSANKKITQIVEVIDPYDKEKKLLQL 326

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                      ++F   +   +R  + L    ++V A+ G+LSQQ+R+ +L   + G++ 
Sbjct: 327 LSKYSKNDDKILIFALYKKEATRVERTLNYKGYKVSAIHGDLSQQQRTQSLNDFKTGKSS 386

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR-- 354
           + +ATDVAARG+D+P++++VI+       E+ +HR GRTGRAG+ G++  +  ++ +   
Sbjct: 387 LLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGKTGIAHTLFTEHEKHLS 446

Query: 355 -RAERLFREANVSVVWE 370
              + + R AN  V  E
Sbjct: 447 GALQNILRGANQPVPEE 463


>gi|256421635|ref|YP_003122288.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
 gi|256036543|gb|ACU60087.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
           2588]
          Length = 446

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 203/453 (44%), Gaps = 16/453 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  N+ + +  AL + GY   T +Q+ + +  +  +DV   AQTG+GKT A+ L    
Sbjct: 2   TFDDLNLSRPLLNALEDLGYKTPTVIQQKVFSVVMSGQDVCGIAQTGTGKTFAYLLPCLR 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                 +RF     P  L + PTREL VQV   ++ L     V +A   GGV+++ +   
Sbjct: 62  QFKFSKERF-----PQLLILVPTRELVVQVVDAVKQLTPYMSVEIAGFYGGVNMNPQMET 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +VV TPGRL D +    L +  +K +V+DE DEML+LGFR  +E ILD  P +R
Sbjct: 117 ASGKLDVVVATPGRLVDIVLSGTLKLKAIKRIVIDEMDEMLNLGFRPQVERILDLLPVRR 176

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSATI+  +  L + +      V  A       +I   A  V        ++ +L 
Sbjct: 177 QNLLFSATITEDVEKLIQTHFNAPATVEAAPAGTPLKNISQSAYDVPNFYTKVNLLELLL 236

Query: 241 YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRARV 297
              +     +VF +T+   +   + L     +    +    +Q  R N +   +DG  R 
Sbjct: 237 AKDSSMNKVLVFVATKEMANDLYEQLETKFPEQAGVIHSNKAQNHRFNTVNKFKDGSYRF 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+ ARG+D+ ++  VI  +    PE+ +HR GRTGRA ++G S+       +   +
Sbjct: 297 IIATDIIARGLDIAEVSHVISFDTPEVPESYMHRIGRTGRADKEGHSILFTKPQEKENKD 356

Query: 358 RLFREANVSVVWEPAPS---VEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
            +    N  +   P P    +  +   D +  ++   FL  +   E+            +
Sbjct: 357 NIEELMNYQIPVLPLPEELVISDVLTEDEKPQVKMKNFLIKLPSREEAGPAFHEKSAKNK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           K+    ++I  A     +   P +  +   R R
Sbjct: 417 KVN---VKIRHADKMKLKYGKPKTRGAKPKRKR 446


>gi|199561314|ref|NP_001013216.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Rattus norvegicus]
          Length = 734

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLN--VACFYGGTSYQSQINQI 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDS 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 373

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 374 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 432

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 433 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 493 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523


>gi|291004226|ref|ZP_06562199.1| ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 491

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 191/394 (48%), Gaps = 7/394 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL + G      +Q A +   L  +DVL   QTGSGKT+AFGL L +      
Sbjct: 53  LPERLVRALGDLGMTEAFPIQAATIPDALGGRDVLGRGQTGSGKTLAFGLPLLAM----Q 108

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA QV   L+ L    G+ V   +GG+S  R+   L+ G  
Sbjct: 109 GSSARPLHPRGLVLVPTRELATQVTDSLKPLAKALGLYVREVVGGMSFSRQADTLRRGVD 168

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL DH+R     +S ++   LDEAD+M D+GF   +  +LD  P   + L+FS
Sbjct: 169 VLVATPGRLSDHVRQGTCVLSEVERTALDEADQMADMGFLPQVRELLDLVPADGQRLLFS 228

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L   Y  D V  ++A        +D+  +LV    + +  V          
Sbjct: 229 ATLDGDVDKLVHEYMTDPVVHSLAPPAASVDSMDHHQLLVTAEQKQD--VLARIGAREGR 286

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R T+ L     +  AL G  +Q  RS  L+  R G     +AT+VAAR
Sbjct: 287 TIMFVRTKHHADRLTRKLRAAGVRAGALHGGKAQNARSRILEEFRQGGTTTLVATNVAAR 346

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + D+ LV+H E  ++P++ LHR+GRT RAG  G  V ++  + +R    +  +A V 
Sbjct: 347 GIHVDDVSLVVHVEPPADPKDYLHRAGRTARAGATGTVVTLVTDDQKRAFRAMTAKAGVE 406

Query: 367 VVWEP-APSVEAIRERDAQRILQDPLFLDSIQGD 399
                 AP+ E +      R        +  +G+
Sbjct: 407 ATATKVAPADEELARLTGAREPSGIAVTEPKRGE 440


>gi|282853714|ref|ZP_06263051.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282583167|gb|EFB88547.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 494

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 6/357 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASA 74
           G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D      +    
Sbjct: 5   GIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGK 64

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  +VVGTPGR
Sbjct: 65  PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGR 124

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FSAT+   I 
Sbjct: 125 LLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIM 184

Query: 195 T--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
               ++ ++   VR   A       D           D+   I  IL+ +  +  I+FC 
Sbjct: 185 ALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCR 244

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVAARGID+  
Sbjct: 245 TKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTG 304

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  VI+ E   + +  +HR GRTGRAG KG++V ++      R + + +  N+ +  
Sbjct: 305 VSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKALNLELSE 361


>gi|314983245|gb|EFT27337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
 gi|315090093|gb|EFT62069.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
          Length = 494

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 6/357 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR----FSPASA 74
           G V+   +Q   +   +   D++  A+TG+GKT+AFG+ +   +    D      +    
Sbjct: 5   GIVSPFPIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILLRITLPGDEGWEELTTKGK 64

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P AL + PTRELA+QV +++    +  G  V    GGV    +   L+ G  +VVGTPGR
Sbjct: 65  PQALVMCPTRELALQVSKDISTAASVRGARVLTVYGGVGYESQIDALKAGVDVVVGTPGR 124

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D  + K L++SH++ VVLDEADEMLDLGF  D+E ++  +P  R+ ++FSAT+   I 
Sbjct: 125 LLDLSQRKDLDLSHVRIVVLDEADEMLDLGFLPDVENLIGRTPASRQTMLFSATMPAPIM 184

Query: 195 T--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
               ++ ++   VR   A       D           D+   I  IL+ +  +  I+FC 
Sbjct: 185 ALARSQLHRPVHVRAEGADTQATVPDTQQFVYQAHPLDKIEIIGRILQANDVEKVIIFCR 244

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +  R +  L +  F+  A+ G+L+Q  R  AL+  R G A + +ATDVAARGID+  
Sbjct: 245 TKRACQRLSDDLDDRGFKTRAIHGDLTQVAREKALKKFRHGDATILVATDVAARGIDVTG 304

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           +  VI+ E   + +  +HR GRTGRAG KG++V ++      R + + +  N+ +  
Sbjct: 305 VSHVINHECPEDEKTYVHRIGRTGRAGAKGVAVTLVDWADVTRWKLINKALNLELSE 361


>gi|254242152|ref|ZP_04935474.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
 gi|126195530|gb|EAZ59593.1| hypothetical protein PA2G_02881 [Pseudomonas aeruginosa 2192]
          Length = 446

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 186/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F   P  + + +AL    +   T VQ A +   L   D+ V+AQTGSGKT AF      
Sbjct: 6   LFSQFPLHERLLKALESLSFSEPTPVQAAAIPKALEGHDLRVTAQTGSGKTAAFL---LP 62

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L        P S   AL + PTRELA Q  +E+E     T +   +  GG     +   
Sbjct: 63  LLHRLLAEDKPRSLARALILLPTRELAQQTLKEVERFAQFTFIKACLITGGEDFKVQGAR 122

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I++GTPGRL +      L +  ++ +VLDEAD MLD+GF DD+  + ++ P + 
Sbjct: 123 LRKNPEIIIGTPGRLLEQRNAGNLPLQDIEVLVLDEADRMLDMGFADDVLALANACPAEL 182

Query: 181 RMLMFSATISPA--ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S A     +A+  ++  V           +          ++ ++  +  +
Sbjct: 183 QTLLFSATHSGAGLNKVIAEVLREPQVLRLNQVGELNENVRQQVITADDVAHKEQLLQWL 242

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L       AIVF +TR S  R T  L  +  +V  L GE  Q++R  A++ ++ G  ++ 
Sbjct: 243 LSNETYTKAIVFTNTRVSADRLTGRLIANQHKVFVLHGEKDQKDRKLAIERLKQGAVKIL 302

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L+LVI+ ++  + +  +HR GRTGRAG +G+++ +I          
Sbjct: 303 VATDVAARGLDVEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHGDWNLMSS 362

Query: 359 LFREANVSVVWEPAPSVEA 377
           + R    +        ++A
Sbjct: 363 VERYLKQNFERRNIKELKA 381


>gi|330040429|ref|XP_003239908.1| DEAD box protein [Cryptomonas paramecium]
 gi|327206834|gb|AEA39010.1| DEAD box protein [Cryptomonas paramecium]
          Length = 396

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 178/360 (49%), Gaps = 9/360 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + I       G+   T +Q   +   L+ +D+L  AQTGSGKT+AF + +  +
Sbjct: 4   FKHLGVCEQIVRICDSVGFKYATKIQAKTIPYALKNRDILGYAQTGSGKTLAFVIPILQS 63

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL     F       +  I P+RELA QV   +E +    G+ + +   G+    +   +
Sbjct: 64  LLKFQITF------YSFVIVPSRELAFQVASYIETIGYLFGIKIGLLTSGIEYATQISII 117

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +   H+++ TPGRL ++          ++K +V DEAD +    F      ++++ PK +
Sbjct: 118 KRSPHMMICTPGRLIEYTEKTDNLFLKNIKKIVFDEADRLFQNDFDKKFLSVVENLPKFK 177

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT++  I  L K    + V++ I  + +  S +    + +    ++  +  I  
Sbjct: 178 QSFLFSATMTINIEKLKKISMSNPVKIKINKKYKTVSTLVQNYIFMPFKSKNCYLSYICN 237

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+F  T+    +   +L    F+V    G+LSQ +R+  L   +  + ++ ++
Sbjct: 238 EFSDCLAIIFVDTQICAEKIAVLLKVLNFKVAYFHGKLSQDKRAKILHDFKLKKIKILVS 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+A+RGID+PD+EL+I+ ++     + +HR GRT RAG+ G  + ++ Q      +++ 
Sbjct: 298 TDLASRGIDIPDIELIINYDIPLYTRDYIHRIGRTARAGKTGRVINLVTQYDISSYQKIE 357


>gi|323341495|ref|ZP_08081736.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
 gi|323091106|gb|EFZ33737.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
          Length = 446

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 180/379 (47%), Gaps = 10/379 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I  AL E G+   T VQ  ++   L+ + V+  +QTGSGKT  F L +  T+  E 
Sbjct: 10  FKPFIDAALKEIGFKEPTEVQARLIPLILKRRSVVGQSQTGSGKTHTFLLPIFQTIDPE- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRERRDLQN 123
                 +   A+   P+RELA Q+    + +   +   + V           +  +    
Sbjct: 69  -----LTEVQAVITTPSRELAYQIYDAAKQIAKHSEKEILVHNYVGGTDKQRQIEKLEHR 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              IV+GTPGR+ D ++ + L++ +   +V+DEAD  LDLGF  + + I  + PK+ +M+
Sbjct: 124 QPQIVIGTPGRVLDLMKSQALDVHNASVLVVDEADMTLDLGFLKETDAIASAMPKELQMM 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSATI   +    + Y  D +   + ++N     ID   +     DR+  I  +L    
Sbjct: 184 VFSATIPDKLKPFLRKYMTDPIVEVVENKNVISPTIDNWLISTKGRDRNQLIYQLLTMGQ 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+  V   T+ L     +V  + G +  +ER   ++ +++   +  +ATD+
Sbjct: 244 PYLALVFANTKERVDDLTRYLRSQGLRVAKIHGGIPPRERKRTMREIQNMEYQFVVATDL 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+  +  VI+ ++  + E  +HR GRTGR G +G ++ +   +  +    L    
Sbjct: 304 AARGIDIEGVSQVINDDIPEDLEFFIHRVGRTGRNGMEGTAITLYAPSEDKMIAELEN-L 362

Query: 364 NVSVVWEPAPSVEAIRERD 382
            +S   +   + E +   D
Sbjct: 363 GISFEEKKLSNGELVASYD 381


>gi|163790997|ref|ZP_02185419.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
 gi|159873736|gb|EDP67818.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Carnobacterium sp. AT7]
          Length = 449

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 103/389 (26%), Positives = 179/389 (46%), Gaps = 12/389 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + FE   +   + +A++E G+   T VQ+ ++      K V+  +QTGSGKT  F L L 
Sbjct: 3   QTFEKFGLQPFLIDAITEIGFTQPTEVQQKLIPAIQNGKSVIGQSQTGSGKTHTFLLPLV 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           + +               +   P+RELA Q+ +   +L        +V     G     +
Sbjct: 63  NKIDPSRKEV------QVVITTPSRELAEQIYQAALQLVEKAPTKIIVQNFVGGTDKKRQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +      HIV+GTPGR+ D +  K L I     +V+DEAD  LD+GF  D++ I    
Sbjct: 117 MTKLSGTQPHIVIGTPGRILDLVTEKSLLIHTSPVLVIDEADMTLDMGFLTDVDQIASKL 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+K +ML+FSATI   +    K Y  + +   I  +      ID   +     DR + I 
Sbjct: 177 PEKLQMLVFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTIDNWLISTKGKDRIDVIY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        ++F +T++ V      L     +V  + G++  +ER   ++ +++   +
Sbjct: 237 ELLTIGQPYLVMIFANTKSKVDELADGLKSRGLKVAKIHGDIPPRERKRVMKQVQNLEYQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+AE+  +    +HR GRTGR   KG ++ +   + +   
Sbjct: 297 FVVATDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
             + +   ++   +     E +   D +R
Sbjct: 357 IDIEK-LGITFEPKTIQKGEIVETYDRKR 384


>gi|257869404|ref|ZP_05649057.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
 gi|257803568|gb|EEV32390.1| DEAD-box ATP dependent DNA helicase [Enterococcus gallinarum EG2]
          Length = 448

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 111/466 (23%), Positives = 207/466 (44%), Gaps = 27/466 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      I EAL+E+ + + T VQE ++    + + V+  +QTGSGKT  F L L  
Sbjct: 2   SFESFKFQPFIYEALAEKKFTSPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLMD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            +  + D          +  AP+RELA Q+ +  + L       + V           + 
Sbjct: 62  QIDPQKDEV------QVVITAPSRELATQIYQAAKQLAEFQQPEIRVTNFVGGTDKQRQM 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R       +V+GTPGR+ D I  + L +   +A V+DEAD  LD+GF ++++ I    P
Sbjct: 116 DRLQNQQPQLVIGTPGRILDMINEQALAVHTARAFVIDEADMTLDMGFLEEVDQIASRLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y ++ +   I  +      I+   +     D++  +  
Sbjct: 176 EKLQMLVFSATIPEKLRPFLKKYLENPLIEEIRPKAVISESIENWLISTKGKDKNQLVYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T++ V   T  L E   +V  + G+++ +ER   ++ +++   + 
Sbjct: 236 LLTTGHPYLAIVFANTKSRVDELTDYLKEKGLKVAKIHGDITPRERKRVMRQVQNLEYQY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+ ++ +  +HR GRTGR    G ++ +   + ++  +
Sbjct: 296 VVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQLAGTAITLYDPSDEQAIQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +  +  V    +   + E +   D  R               ++  +    + DP  I 
Sbjct: 356 AIE-DLGVKFQPKEIKNGEIVATYDRNR---------------RQKREKSRDELDPTLIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
               +  +      ++I        +++ + + R            
Sbjct: 400 LVKKKKKKIKPGYKKKIQWAVDKKNKEKRKIERRQSNRSARKNKKN 445


>gi|195484183|ref|XP_002090584.1| GE13195 [Drosophila yakuba]
 gi|194176685|gb|EDW90296.1| GE13195 [Drosophila yakuba]
          Length = 821

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 398 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 457

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 458 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 517

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 518 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 577

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 578 KPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 637

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 638 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 697

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 698 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 757

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 758 RAGKTGCAISFVTKDDSALFYDL 780


>gi|41054055|ref|NP_956176.1| probable ATP-dependent RNA helicase DDX23 [Danio rerio]
 gi|38014376|gb|AAH60524.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Danio rerio]
          Length = 807

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 109/399 (27%), Positives = 183/399 (45%), Gaps = 29/399 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++P  I E + + GY + T +Q   +   L+ +D++  A+TGSGKT AF + L   +  L
Sbjct: 384 SLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTL 443

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + DR   +   P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 444 PKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLR 503

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D +  + L +S    VVLDEAD M+D+GF  D++ IL+  P   + 
Sbjct: 504 MGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEYIPVTNQK 563

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ--------------------------H 216
                   P          K   R  +                                H
Sbjct: 564 PDTDDAEDPEKMMQNFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPH 623

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ + +L++  ++   ++ +L        I+F + +       K L +  +    L G
Sbjct: 624 ERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHG 683

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTG
Sbjct: 684 GKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTG 743

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           RAG+ G+++  + +        L +    S V    P +
Sbjct: 744 RAGKSGVAMTFLTKEDSSVFYDLKQAILESPVSTCPPEL 782


>gi|229086855|ref|ZP_04219016.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
 gi|228696459|gb|EEL49283.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock3-44]
          Length = 436

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 187/374 (50%), Gaps = 12/374 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   +    + +A+ +  +   T +Q+ I     +   V+  +QTGSGKT A+ L  
Sbjct: 3   LQTFTQYDFQPFLIDAVRDLRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            + + A  +          +  APTRELA Q+ +E+    ++   +  +     IGG   
Sbjct: 63  LNRINANREEV------QLVITAPTRELAQQIYQEIVKLTKFCAEEQMITARCLIGGTDK 116

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R    L+   H+VVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I  
Sbjct: 117 QRSIEKLKKQPHVVVGTPGRIKDLVEEQALFVHKATTIIVDEADLMLDMGFIQDVDKIAA 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   
Sbjct: 177 RMPKNLQMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIEL 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L       AIVF +T+         L E   +V  + G+LS ++R   ++ +RD  
Sbjct: 237 VKNMLLQFKPYLAIVFTNTKKMADEVANGLTERGLKVGRIHGDLSPRDRKKMMKQVRDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     + 
Sbjct: 297 FQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEE 356

Query: 355 RAERLFREANVSVV 368
             + L ++ N++  
Sbjct: 357 AIDSLEKQRNITFK 370


>gi|242801276|ref|XP_002483729.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218717074|gb|EED16495.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 803

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 108/418 (25%), Positives = 188/418 (44%), Gaps = 37/418 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ + + + + GY + T +Q A +   L+ +D++  A TGSGKT +F L L
Sbjct: 362 MRSWEESGLPRRLLDLVKQVGYTDPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPL 421

Query: 59  ASTLLA----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +      +   +     P A+ +APTRELA Q+  E +         V   +GG S+
Sbjct: 422 FVYISELPRLDEFEWRKNDGPYAIILAPTRELAQQIEIEAKKFSKPLNFNVVSIVGGHSL 481

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L++GA I++ TPGRL D +  + L +S    V++DEAD M+DLGF + +  ILD
Sbjct: 482 EEQAYSLRDGAEIIIATPGRLVDCLERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKILD 541

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------- 226
           + P                 +     +    R  +       S ++  A           
Sbjct: 542 ALPVTNEKPDTEEAEDAQAMSQHVGGRDRRYRQTMMYTATMPSAVERIARKYLRRPAIVT 601

Query: 227 --------------------ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
                                   +      ++        IVF + + +     K + +
Sbjct: 602 IGNVGQAVDTVEQRVEFVAGEDKRKKRLADILMSGQFQPPIIVFVNIKRNCDAVAKDIKQ 661

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             F  V L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E
Sbjct: 662 MGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIE 721

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           +  HR GRTGRAG+ G+++  +           +++  ++ +S V E     EA + +
Sbjct: 722 SYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVPEELRKHEAAQSK 779


>gi|307175593|gb|EFN65503.1| ATP-dependent RNA helicase DDX54 [Camponotus floridanus]
          Length = 751

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 101/391 (25%), Positives = 177/391 (45%), Gaps = 10/391 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + + +RGY   T +Q   +   L  +D++  A+TGSGKT  F + L   L    
Sbjct: 15  LSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRQ 74

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  + ++ L   TG+   V +GG S+  +   +     
Sbjct: 75  TK----TGARALILSPTRELALQTLKFIKELGRFTGLKAVVILGGDSMDNQFSIIHENPD 130

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         L + +++ VV DEAD + ++GF + I+ I++  P+ R+ L+FS
Sbjct: 131 IIVATPGRFVHICIEMDLKLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPETRQTLLFS 190

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   AK    D V + +  E++    +    +     ++      +        
Sbjct: 191 ATLPKILVDFAKAGLNDPVLLRLDVESKLPEGLMLSFITCRPEEKLAVLLCLLKRIIKPD 250

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T   V    ++L +       +   L    R       + G+ +V I TDVA
Sbjct: 251 SQTIIFAETMHHVEYIHQILDKANISNTFIYSNLDPCARKINAAKFQTGKVKVLIVTDVA 310

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 311 ARGIDIPYLDYVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLDLHLFLG 370

Query: 365 VSVVWEP----APSVEAIRERDAQRILQDPL 391
             +   P      +VE+   +  Q ++++ L
Sbjct: 371 RPLTIMPSTGSIENVESAVGKMPQSMIEEEL 401


>gi|228941450|ref|ZP_04104001.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974381|ref|ZP_04134950.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980974|ref|ZP_04141277.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228778765|gb|EEM27029.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis Bt407]
 gi|228785431|gb|EEM33441.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818231|gb|EEM64305.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 436

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|195978686|ref|YP_002123930.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225867995|ref|YP_002743943.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225871089|ref|YP_002747036.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|195975391|gb|ACG62917.1| ATP-dependent RNA helicase DEAD/DEAH box family [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225700493|emb|CAW94932.1| putative helicase [Streptococcus equi subsp. equi 4047]
 gi|225701271|emb|CAW98252.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 447

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 196/466 (42%), Gaps = 26/466 (5%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   + +    I EAL E G+V  T VQ+ ++      +D++  ++TGSGKT  F L + 
Sbjct: 1   MSFHDYHFKHYIQEALDELGFVEPTEVQQRLIPIVSTGRDLVGESKTGSGKTHTFLLPIF 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVG---RELEWLYAKTGVVVAVCIGGVSVHR 116
                            A+  AP+RELA Q+    R++     +   +     G     +
Sbjct: 61  ------EKLKEEKEEVQAVITAPSRELATQIFEASRQIAKHSKQEIRIANYVGGTDKQRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   +   +V+GTPGR+ D ++   L I      V+DEAD  +D+GF   ++ I  + 
Sbjct: 115 LDKLKLSQPQLVIGTPGRIYDLVKSGDLAIHKASTFVVDEADMTMDMGFLSTVDKIASAL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  ++L+FSATI   +    + Y  + V   I +E      ID   +     D++  I+
Sbjct: 175 PKTIQILVFSATIPQKLQPFLRKYLTNPVIEQIKTETVIADTIDNWLLSTKGRDKNEQIL 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             L+      A++F +T+         LA +  +   L G +  +ER   +  +++    
Sbjct: 235 ATLKAIQPYLAMLFVNTKERADDLHAFLAANGMKAAKLHGGIPPRERKRIMNQVKNLAFE 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++     +     
Sbjct: 295 YIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLPGTAITFYQPSDDSDI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           + L +   + + + P             ++L++  F D+   D ++  +    K D E I
Sbjct: 355 KELEK---LGITFIP-------------KVLKNGEFQDTYDRDRRQNREKAYQKLDTEMI 398

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDN 462
                +  +      ++I        R + R + RA          
Sbjct: 399 GLVKKKKKKIKPGYKKKIQWAVDEKRRKQRRAEKRAKGRAERQSRK 444


>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
 gi|121742543|sp|Q0CZN5|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
 gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
          Length = 821

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 209/469 (44%), Gaps = 25/469 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 310 NLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 369

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 370 PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRP 426

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 427 DVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 486

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + S+      +              R   ++ + + 
Sbjct: 487 FSATMTDTVDKLIRVGLNRPVRLMVDSKKNTSLTLVQEFVRLRPGREDKRLGYLLYLCKE 546

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   V      +   L G +SQ++R  +++  RDG+    +AT
Sbjct: 547 IYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRDGKVAFLLAT 606

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++       
Sbjct: 607 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK------- 659

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDPEKIA 417
                VV     + +A   + A R++ DP   D         E+++ +VL  +   +++A
Sbjct: 660 -----VVKAAVKASKAQGAKVASRVV-DPAVADQWAKKAADLEEEINEVLEEEKTEKQLA 713

Query: 418 AGFLRIHRA-GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
              +++ +   L   E                D RA +  G ++ N   
Sbjct: 714 QAEMQVTKGENLIKHEAEIMSRPKRTWFESEKDKRAARKLGAAQLNGPD 762


>gi|237843393|ref|XP_002370994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|211968658|gb|EEB03854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
 gi|221481804|gb|EEE20174.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
 gi|221502304|gb|EEE28037.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 434

 Score =  170 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 178/373 (47%), Gaps = 8/373 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DVL  A++G GKT  F L++   L  + 
Sbjct: 51  LKPELLRAIGDAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDT 110

Query: 67  DRFSP-ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDL 121
                     + L IA TRELA Q+  E +        V    +             +D 
Sbjct: 111 SGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLKDA 170

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKR 180
           +   HI++GTPGR+   I+GK LN   +   VLDE D+ L+    R D++ I  ++PKK+
Sbjct: 171 KTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKK 230

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNIL 239
           +++ FSAT++  I  + K + +  V V I  E++     +    V +  S+++  + ++L
Sbjct: 231 QVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNRKLNDLL 290

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  + +      ++L E  F  +A+   L Q+ER N  Q  ++   R+ +
Sbjct: 291 DTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMV 350

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAER 358
           ATD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +  Q+       
Sbjct: 351 ATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQDDTNVLND 410

Query: 359 LFREANVSVVWEP 371
           +     V +   P
Sbjct: 411 VQTRFEVHIAEMP 423


>gi|297561743|ref|YP_003680717.1| DEAD/DEAH box helicase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846191|gb|ADH68211.1| DEAD/DEAH box helicase domain protein [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 566

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 6/375 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ I E L+  G      +Q A +   +  +DVL   +TGSGKT+AFGL +   L+   
Sbjct: 43  LPQDIVEELARNGVTTPFPIQAATIPDAIEGRDVLGCGRTGSGKTLAFGLPV---LMRAA 99

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R + A+ P AL + PTRELA QV   L       GV V   +GG S  R+  +L+ G  
Sbjct: 100 ERRAAANRPRALILVPTRELAHQVRDALRTYARIVGVRVGDVVGGSSYTRQINELRRGVE 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M D+GF   +  +LD      + L+FS
Sbjct: 160 VLVATPGRLSDLIDQGACDLGDVEVSVLDEADQMCDMGFMPQVSELLDQVRPDGQTLLFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + Y  +    ++     Q + +++  + V   D++   +          
Sbjct: 220 ATLDGDVDKLVRKYMNEPRTHSVDPPVSQVAKMEHHLLKVLPRDKNT--IVTQIAAREGR 277

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  ++      ++ LA+      +L G  +Q  R+  L   R+GR +  +ATDVAAR
Sbjct: 278 TILFVRSKYRADTISEQLAQAGVPCASLHGGKTQSVRTRTLAKFREGRIQALVATDVAAR 337

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  +++V++ +L +  ++ LHR GRT RAG  G+ V ++  N +R A RL  +A V 
Sbjct: 338 GIHVDGIDMVVNVDLPTGHKDYLHRGGRTARAGASGLVVSLVAPNQRRMARRLLSDAGVE 397

Query: 367 VVWEPA-PSVEAIRE 380
                  P  E + E
Sbjct: 398 AKQHLVNPGDELLSE 412


>gi|73954677|ref|XP_860395.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX6
           (DEAD-box protein 6) (ATP-dependent RNA helicase p54)
           (Oncogene RCK) isoform 3 [Canis familiaris]
          Length = 438

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 168/374 (44%), Gaps = 57/374 (15%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E G+   + +QE  +   L  +D+L  A+ G+GK+ A+ + L   
Sbjct: 98  FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           L  + D         A+ I PTRELA+QV +  ++      G  V    GG ++  +   
Sbjct: 158 LDLKKDNI------QAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR 211

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +  H+V+ TPGR+ D I+     + H++ +VLDEAD++L   F   +E I+ + PK R
Sbjct: 212 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 271

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L++SAT   ++                                               
Sbjct: 272 QILLYSATFPLSVQ---------------------------------------------- 285

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC++   V    K +++  +    +  ++ Q+ R+      R+G  R  + 
Sbjct: 286 KFMINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVC 345

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+  RGID+  + +VI+ +     E  LHR GR+GR G  G+++ +I  + +   + + 
Sbjct: 346 TDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 405

Query: 361 REANVSVVWEPAPS 374
            +    +  +P PS
Sbjct: 406 EQLGTEI--KPIPS 417


>gi|323490080|ref|ZP_08095301.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
 gi|323396376|gb|EGA89201.1| ATP-dependent RNA helicase yqfR [Planococcus donghaensis MPA1U2]
          Length = 431

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 188/388 (48%), Gaps = 11/388 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   P    + EA+ + G+   T +Q+ ++   L+    +  + TG+GKT +F + +
Sbjct: 1   MTKFNEYPFKPFLLEAVEKLGFTEPTQIQKEMMPHILKGTSAIGQSHTGTGKTHSFIIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +              A+  APTREL  Q+  EL+ L   +G+ V   IGG    R  
Sbjct: 61  VERIDVSKQEV------QAVISAPTRELGTQIFNELQKLVVGSGIEVKSFIGGTDKQRSI 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+   HIVVGTPGRL D ++   L +   K +++DEAD   DLGF ++I+ +      
Sbjct: 115 NKLKTQPHIVVGTPGRLRDLVKENALLVHTGKILIVDEADLAFDLGFIEEIDQVAGKMKD 174

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
              M +FSATI   +    K Y +  + V I  +      +D+  V V    + + + ++
Sbjct: 175 DLEMYVFSATIPEKLKPFLKKYMESPIHVKIGDKRPTADGLDFYLVPVRSKKKMDRLQDV 234

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++      AI+F +TR +       LA+   +V  + G+L+ +ER   ++ +RD   +  
Sbjct: 235 MKVINPYLAIIFVNTRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYI 294

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  +  VI+ EL  + E  +HR GRT RAG KG+++ +          R
Sbjct: 295 VATDLAARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGMKGLAITLFKPEEDDAIVR 354

Query: 359 LFREANVSVVWEPAPSVE--AIRERDAQ 384
           + +   +    +     E   ++ER ++
Sbjct: 355 IEK-MGIPFQQKDIVKGEFVDLKERHSR 381


>gi|223043299|ref|ZP_03613346.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
 gi|222443510|gb|EEE49608.1| ATP-dependent rna helicase, dead/deah box family [Staphylococcus
           capitis SK14]
          Length = 447

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 203/423 (47%), Gaps = 16/423 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + +A+ +  +   T +Q  I+   L+  +++  +QTG+GKT +F L L   
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKTHSFLLPLIQM 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
           +  +         P A+ +APTRELA Q+ +    L      V   + IGG  + ++++ 
Sbjct: 66  IDVD------LQEPQAIVVAPTRELAQQLFQAASHLCKFKQEVNVKLFIGGTDIEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +G  L+      +++DEAD M+DLG  +D+++I      + 
Sbjct: 120 CNRQPQLIIGTPTRINDLAQGGHLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLNDEA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y      V +  ++    +I++  +    + + +  +N++ 
Sbjct: 180 HIAVFSATIPKSLQPFLNKYLSQPEFVEVDHKSHNKKNIEFYLIPTKGTAKVDKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +     L +   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRENANELADSLNKEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDP 413
            +     NV +       ++A   R  ++   D L  +    ++   K+ V     K   
Sbjct: 360 DKGYHFENVDIKNGELKPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK 419

Query: 414 EKI 416
           +++
Sbjct: 420 QEV 422


>gi|218231735|ref|YP_002369093.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228960551|ref|ZP_04122200.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229111759|ref|ZP_04241307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|229129563|ref|ZP_04258533.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|229146871|ref|ZP_04275236.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|229152486|ref|ZP_04280678.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|218159692|gb|ACK59684.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           B4264]
 gi|228631094|gb|EEK87731.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1550]
 gi|228636699|gb|EEK93164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST24]
 gi|228653880|gb|EEL09748.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-Cer4]
 gi|228671753|gb|EEL27049.1| ATP-dependent RNA helicase yqfR [Bacillus cereus Rock1-15]
 gi|228799151|gb|EEM46119.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 436

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|120553901|ref|YP_958252.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120323750|gb|ABM18065.1| ATP-dependent RNA helicase DbpA [Marinobacter aquaeolei VT8]
          Length = 457

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 143/408 (35%), Positives = 208/408 (50%), Gaps = 14/408 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+   +   +   L + GY   T VQ   +   L  KDV+  AQTGSGKT AFG+ +
Sbjct: 1   MSSFKALGLSAAMQANLDQLGYQQPTPVQAEAVPLALAGKDVIAMAQTGSGKTAAFGIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
              +     R        +L + PTRELA QV + L  L   K  V V    GGV +  +
Sbjct: 61  IEAIDPRCFRV------QSLVLCPTRELADQVAKALRELARAKDNVKVLTLCGGVPIGPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L +GAHIVVGTPGR+ DH+R   L++  LK +VLDEAD MLD+GF + +  I+  SP
Sbjct: 115 IGSLSHGAHIVVGTPGRVDDHLRKGTLSLDGLKVLVLDEADRMLDMGFEEVVTSIVSQSP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+FSAT  PAI  L++ +Q     V + S+    +  +    +     R  A+  
Sbjct: 175 GGRQTLLFSATWPPAIRKLSEQFQSKPEDVRVESKAATITIEESFYEIQ-PDQRAAAVAA 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L      +++VFC+T+      +  L    F  ++L G+L Q+ER +AL    +    V
Sbjct: 234 LLSRFQPVSSLVFCTTKRDCDELSDELGRLGFSALSLHGDLDQRERDSALVRFANQSCTV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L LVI+AE + +PE   HR GRTGRAG +G +V +       +  
Sbjct: 294 LVATDVAARGLDIKGLPLVINAEPARDPEVHTHRVGRTGRAGEQGHAVTLCTPRQGHKIT 353

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           RL  E    V+W    ++ A    +A R +   +    + G  K  V 
Sbjct: 354 RLEAERGEPVLWGDTEALLA----EALRPVTPAMKTLCLAGGRKDKVR 397



 Score = 59.6 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
                  L+ G K K     +M  L   +GI   ++G I +     FV V +        
Sbjct: 381 PAMKTLCLAGGRKDKVRPGDVMGALTGEAGIPGAAVGKIDLFDFQCFVAVESRWASQALA 440

Query: 524 TVKLDK 529
            ++  K
Sbjct: 441 RLEKGK 446


>gi|67526005|ref|XP_661064.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
 gi|40743814|gb|EAA63000.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
          Length = 1548

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 158/370 (42%), Gaps = 54/370 (14%)

Query: 4    FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
            FE+  I + +   + E G+   + +QE  +   L  +D+L  A+ G+GKT AF +     
Sbjct: 1136 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLER 1195

Query: 62   LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +  ++ +        AL + PTRELA+Q     + L    G+ V V  GG  +  +   L
Sbjct: 1196 INPKSTK------TQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRL 1249

Query: 122  QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             +  HI+VGTPGR+ D       ++S     V+DEAD++L   F   IE +L   PK R+
Sbjct: 1250 NDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQ 1309

Query: 182  MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            +++FSAT    +                                                
Sbjct: 1310 VMLFSATFPMIVK----------------------------------------------S 1323

Query: 242  HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +I+FC++   V    K + E  +        + QQ R+      R+G  R  + +
Sbjct: 1324 FKINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCS 1383

Query: 302  DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
            D+  RGID+  + +VI+ +   N E  LHR GR+GR G  G+++ +I  + +    ++ +
Sbjct: 1384 DLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQ 1443

Query: 362  EANVSVVWEP 371
            E    +   P
Sbjct: 1444 ELGTEIQPIP 1453


>gi|156103333|ref|XP_001617359.1| ATP-dependent RNA helicase [Plasmodium vivax SaI-1]
 gi|148806233|gb|EDL47632.1| ATP-dependent RNA helicase, putative [Plasmodium vivax]
          Length = 717

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 187/426 (43%), Gaps = 62/426 (14%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + +   L+ + +   T++Q+      L  KD++  A+TGSGKT+AF L     +L +
Sbjct: 284 NFHEAVVNHLNAK-FKEPTAIQKVTWPIALSGKDLIGVAETGSGKTLAFALPALMHILKQ 342

Query: 66  --------------------------------------------------NDRFSPASAP 75
                                                             ND        
Sbjct: 343 REGERKSGRESGLENAREHRLEQNQEDMGEEPSQEWNNEPTQGATQRSSGNDTHEAERTV 402

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTREL +QV  E++    +  +      GGV  + +  +L+ GA IVV TPGRL
Sbjct: 403 YGLILLPTRELCMQVVDEIKAFEKELHIRSVAVYGGVPKYTQISNLKKGADIVVATPGRL 462

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT- 194
            D +    +++     VV+DEAD +LD+GF   ++ I+    + +++L F+AT    +  
Sbjct: 463 LDLLESGVIHLLRCIYVVIDEADRLLDMGFEKQLKKIMTQVNRNKQLLFFTATWPEQVRK 522

Query: 195 --TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
                 ++    +++  +      +      +  ++  +   +  + + +     ++FC 
Sbjct: 523 LAYQFSSFDPVKIQIGKSELTANKNIQQSVVISSSIDLKKKLLDWLKQNYEGNKILIFCD 582

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           T+ +     K L  H +  +A+ G+  Q+ER   L   R  R  + +ATDVA+RG+D+ +
Sbjct: 583 TKRNCDSLCKELRYHQYNALAIHGDKEQRERDRILSNYRSDRCNILVATDVASRGLDIKN 642

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--------MQRRAERLFREAN 364
           + +V++ +L +  E+ +HR GRTGRAG+KG +V   P +          R   +L  +AN
Sbjct: 643 ISVVVNYDLPNTIEDYIHRIGRTGRAGQKGRAVLFFPYDYYVPQKGRFARDLVKLLSKAN 702

Query: 365 VSVVWE 370
            +V  E
Sbjct: 703 HAVPAE 708


>gi|319744243|gb|EFV96608.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
           agalactiae ATCC 13813]
          Length = 419

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 109/441 (24%), Positives = 195/441 (44%), Gaps = 28/441 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I  AL E  +V+ T VQ  ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKPYIQSALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D          +  AP+RELA Q+ +  + +   +   V V         + + 
Sbjct: 62  KLDESSDDV------QVVITAPSRELATQIYQATKQIAEHSEQEVRVVNYVGGTDKLRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  S P
Sbjct: 116 EKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++L+FSATI   +    K Y  + +   I +       ID   +     D++  I+ 
Sbjct: 176 KDVQILVFSATIPQKLQPFLKKYLTNPLMEKIKTATVIADTIDNWLLSTKGRDKNAQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L+ +  +V  + G ++ +ER   +  +++     
Sbjct: 236 LSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L +   + + + P             +++++  F D+   D +   +    K D E I 
Sbjct: 356 ELEK---LGINFIP-------------KVIKNGEFQDTYDRDRRNNREKSYQKLDTEMI- 398

Query: 418 AGFLRIHRAGLCAPEEITPVS 438
            G ++  R      +E   + 
Sbjct: 399 -GLVKKKRKNKTRLQEKNSME 418


>gi|191637659|ref|YP_001986825.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|190711961|emb|CAQ65967.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
 gi|327381715|gb|AEA53191.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           casei LC2W]
 gi|327384881|gb|AEA56355.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           casei BD-II]
          Length = 448

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 197/451 (43%), Gaps = 14/451 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   I + L+       T +Q+ ++   LR ++++  +QTGSGKT AF + L S
Sbjct: 5   FKQFQ-LKPFIIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLS 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            +    D      A   +  AP+RELA Q+    +          +  +  G     +  
Sbjct: 64  MVDPTED------ATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQID 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +   +  H+ +GTPGR+ D I+   L  S ++  V+DEAD  LD+GF + ++ I  S P 
Sbjct: 118 KLQNHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +M +FSATI   +    + Y  +   + +  ++     ++   +     D++  I  +
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  
Sbjct: 238 VTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYV 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  + +VI+AE+  + E  +HR GRTGR G  G +V +     + +   
Sbjct: 298 VATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAE 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L     +    +   + E +    R R   R  +      +I+G  KK     +  +  +
Sbjct: 358 LE-HMGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
              A  L   R    A  +         R R
Sbjct: 417 IRTAVLLERKRNTKIARRQALLAEKRKNRKR 447


>gi|147859772|emb|CAN78903.1| hypothetical protein VITISV_026451 [Vitis vinifera]
          Length = 692

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 149/369 (40%), Gaps = 51/369 (13%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N P    E +++ G+V  T +Q       L+ +D++  A+TGSGKT+A+ L     + A+
Sbjct: 302 NFPGYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ 361

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD----- 120
                    P+ L +APTRELAVQ+  E     + T +      GG     + RD     
Sbjct: 362 PP-LVRGEGPIVLVLAPTRELAVQIQEEALKFGSFTKIRSTCIYGGAPKGPQIRDLQRGW 420

Query: 121 --------LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
                   L  G  IV+ TPGRL D +  +  N+  +  +VLDEAD MLD+GF   I  I
Sbjct: 421 CTKILSIALMLGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKI 480

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +      R+ L +SAT    + TLA+ + ++  +V I S++ + +    + V V      
Sbjct: 481 ISQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSQDLKANQSIQQVVEVVTETEK 540

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          +    T                                       
Sbjct: 541 YNSNRRPSTVMELVVVAARLT-------------------------------------HT 563

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
                      +    D+ D++ VI+ +  S+ E+ +HR GRTGRAG KG ++     + 
Sbjct: 564 SIFINFSDGFESDGDGDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAITFFTHSN 623

Query: 353 QRRAERLFR 361
            + A  L +
Sbjct: 624 AKFARDLIK 632


>gi|117645724|emb|CAL38329.1| hypothetical protein [synthetic construct]
          Length = 619

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 192/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFPLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKRISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 559 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 591


>gi|117921368|ref|YP_870560.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           ANA-3]
 gi|117613700|gb|ABK49154.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
          Length = 487

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 186/379 (49%), Gaps = 7/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   +   I  A++E GY+ LT VQ+ ++   L  KD++  AQTG+GKT +F L +
Sbjct: 22  MK-FDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPV 80

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  + +         AL + PTRELA+QV   ++       +      GG +++ +R
Sbjct: 81  LEQLSKQPND---KPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQR 137

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      
Sbjct: 138 KGVEQGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAT 197

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT S A+  L+ +   +       +EN   S ++     V    +   +  +
Sbjct: 198 EHQTMLFSATYSDAVKQLS-HKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSEL 256

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF ST+       + L           G+ +Q  R+  L   + G+ RV 
Sbjct: 257 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 316

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +          
Sbjct: 317 VATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 376

Query: 359 LFREANVSVVWEPAPSVEA 377
           +      ++     P  E 
Sbjct: 377 IEALIGQTLPVTVQPGYEE 395


>gi|229031934|ref|ZP_04187921.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
 gi|228729398|gb|EEL80388.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1271]
          Length = 436

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    P+  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPRNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|333025550|ref|ZP_08453614.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
 gi|332745402|gb|EGJ75843.1| putative ATP-dependent RNA helicase [Streptomyces sp. Tu6071]
          Length = 734

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 210/452 (46%), Gaps = 9/452 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 58  LPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASL---A 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G  
Sbjct: 115 GGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGVD 174

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 175 ILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLFS 234

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  D V   + +     + + +  ++V   D+    V          
Sbjct: 235 ATLENEIDALVKRYLVDPVAHEVDAAQGAVTTMSHHILIVKPRDKAP--VTAAIASRKGR 292

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 293 TIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAAR 352

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 353 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 412

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A+ + +   I       +     E        A+ + E +     R  R 
Sbjct: 413 AARHQIGS--AVFDAELAEITGARSMTEV--QAESAGQSAKQAEREVEDLTRELERAKRR 468

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
                 E   +   + R+R  +      V  G
Sbjct: 469 ASEYRAEADRLVARAARERGEEPPAPAAVAEG 500


>gi|222109707|ref|YP_002551971.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
           TPSY]
 gi|221729151|gb|ACM31971.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
          Length = 469

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 134/406 (33%), Positives = 207/406 (50%), Gaps = 14/406 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L + GY  +T +Q A L   L+ +D++  A TGSGKT AFGLA+   
Sbjct: 16  FSSLPLSPEMLANLQQLGYAQMTPIQAASLPFSLQGRDLIAQASTGSGKTAAFGLAMVDR 75

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           L   N R+    A   L + PTRELA QV  E+  L   +  + V    GGV    +   
Sbjct: 76  L---NPRW---FAVQGLVLCPTRELADQVATEIRRLARAQDNIKVVTVYGGVPSRGQIAS 129

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGAHIVVGTPGR+ D +    L+I+ LK +VLDEAD MLD+GF  DIE ++   P +R
Sbjct: 130 LENGAHIVVGTPGRVMDLMERGKLDIAKLKTLVLDEADRMLDMGFLADIETVVRQCPAER 189

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  LA+ + +    V +A+++           + A   + + +  +L 
Sbjct: 190 QTLLFSATYPDGIAGLAQRFMRAPQMVKVAAQHGAGKIAQRWYEVDARE-KVDVVARMLA 248

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    ++I FC+T+         L    F  +AL GEL Q+ER   L    +    V +A
Sbjct: 249 HFRPASSIAFCNTKQQCRNVVTALQSQGFSALALFGELEQRERDEVLVQFANKSCSVLVA 308

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ DL  VI+ +++ +PE  +HR GRTGR   +G+++ ++  +      ++ 
Sbjct: 309 TDVAARGIDIADLSAVINVDVTPDPEVHIHRIGRTGRGDAEGLALNLVSMDEMGSVGKIE 368

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                +  + P   +      +    LQ P+    I G  +  +  
Sbjct: 369 LLQGRACEFFPVDELTPTAGGE----LQPPMCTIQIIGGRRDKIRA 410



 Score = 46.1 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 6/107 (5%)

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
           D E +A   + +   G     E+           F          GG            +
Sbjct: 347 DAEGLALNLVSMDEMGSVGKIELLQGRAC----EFFPVDELTPTAGGELQP--PMCTIQI 400

Query: 472 SVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGV 518
             G + K  A  +M  +C   G  R+ IG I V    T+V V     
Sbjct: 401 IGGRRDKIRAGDVMGAMCADFGYAREQIGKISVNDFSTYVAVDRAIA 447


>gi|82706116|ref|XP_727247.1| ATP-dependent RNA helicase Has1 [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23483000|gb|EAA18812.1| probable ATP-dependent RNA helicase has1 [Plasmodium yoelii yoelii]
          Length = 649

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 105/415 (25%), Positives = 197/415 (47%), Gaps = 8/415 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + + L E  ++ LT +Q   +   L  KD+L +A+TGSGKT+AF +     
Sbjct: 229 FEDLDICDALKKGLKELNFITLTEIQSKCIPHFLNGKDILGAAKTGSGKTLAFLVPSIHI 288

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N +F P +    L I+PTREL +Q+ +    L         + IGGVS + E++  
Sbjct: 289 LY--NIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKF 346

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I++ TPGRL DH++     N  +L  +++DEAD +L +GF ++I  I+   PKKR
Sbjct: 347 IHGINILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKR 406

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT +  + +L +   +  + + + ++      +     LV    R   +   L+
Sbjct: 407 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 466

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF +   SV  +  +L         + G+  Q +R  +       +  + + 
Sbjct: 467 RNTSKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAILLC 526

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
           T+VAARG+D+P++  +I  +   + +  +HR GRT R     G ++  + ++  +    L
Sbjct: 527 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIFLMKHELKFLNYL 586

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +  N+ V        + I  +   + I+     L  +  +  K    ++    P
Sbjct: 587 -KFYNIPVNQFSYDQKKLINIQSQMESIVTKNFHLHKMAREAFKSYLNVIINLSP 640


>gi|329937165|ref|ZP_08286764.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329303446|gb|EGG47332.1| ATP-dependent RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 186/368 (50%), Gaps = 7/368 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE  ++P  +   LS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 67  VESFEELDLPARLLTTLSAQGMSAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 126

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PLAL + PTRELA QV   L       G+ +   +GGVS+ R+ 
Sbjct: 127 LAR--THGQRAEPRY-PLALVLVPTRELAQQVTAALTPYAKALGLRLTTVVGGVSLGRQA 183

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD +  
Sbjct: 184 SALRGGAEVVVATPGRLKDLIDRDDCRLDSVALTVLDEADQMTDMGFMPQVTALLDRTRP 243

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + L+FSAT+   +  L + Y  D V  ++       + +++  + V   D+       
Sbjct: 244 DGQRLLFSATLDRNVDRLVRRYLHDPVVHSVDPAAGAVTTMEHHVLHVDDEDKHATTAR- 302

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +  R  K L     +  AL G  SQ +R+  L   +DG     
Sbjct: 303 -IAAREGRVIMFLDTKHAADRLAKKLLAVGVRAAALHGGKSQSQRTRTLAQFKDGNVTAL 361

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IAT+VAARGI + DL+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   R
Sbjct: 362 IATNVAARGIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRREMTR 421

Query: 359 LFREANVS 366
           L  +A ++
Sbjct: 422 LMADAGIT 429


>gi|168003567|ref|XP_001754484.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694586|gb|EDQ80934.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 704

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +P        L E  +V++T++Q A +   L   DVL +A+TGSGKT+AF L + 
Sbjct: 57  KDFAALPLSDRTQRGLKEHKFVHMTAIQRAAIPHALCGHDVLGAAKTGSGKTLAFLLPVV 116

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     ++       A+ I+PTRELA Q+  EL  +     +   + IGG       +
Sbjct: 117 EKLY--RLKWGAVDGVGAIIISPTRELAGQIFDELRKVGKHHSISAGLLIGGRKGVDTEK 174

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +     +I+V TPGRL  H+      + S L+ +VLDEAD +LD+GF   +  IL   PK
Sbjct: 175 ETVMNLNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDMGFSGTLNAILGQLPK 234

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVR--VNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ ++FSAT + ++  LA+   +D     V+  S     + +    ++V L ++ + + 
Sbjct: 235 ERQTMLFSATQTKSVKDLARLSLRDPEFLAVHAESAAATPARLQQTVMIVPLDEKMDMLW 294

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV---VALSGELSQQERSNALQMMRDG 293
           + ++ H     +VF S+     +F       L        L G + Q  R        + 
Sbjct: 295 SFVKTHLQTKMLVFLSSCKQQVKFVHEAFRRLRPGIPLACLHGRMKQMARMATFYKYCES 354

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  +  ATDVAARG+D P ++ V+  +   +    +HR GRT R    G S+  +  + +
Sbjct: 355 KHALLFATDVAARGLDFPTVDWVLQVDCPEDVATYIHRVGRTARYTASGHSLLFLAPSEE 414

Query: 354 RRAERLFREANVSV 367
                L   A + V
Sbjct: 415 PMLAALE-AAKIPV 427


>gi|258611679|ref|ZP_05711599.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605374|gb|EEW17982.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 424

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 109/394 (27%), Positives = 196/394 (49%), Gaps = 9/394 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             IG A+ + G+   T VQ+ ++   L+ + ++  +QTG+GKT  F L + + +  E + 
Sbjct: 26  PFIGLAIDKLGFYEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVNPEKE- 84

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVHRERRDLQNGAH 126
                A  A+  AP+RELA Q+  E+  +   +   +AV   IGG    R    L+    
Sbjct: 85  -----AVQAVITAPSRELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGTPGR+ D IR + L +   K +V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 140 IIVGTPGRINDLIREQALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +      Y ++    +I  +      +++R +     ++ + + N+L       
Sbjct: 200 ATIPQKLKPFLSKYMENPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYL 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AIVF +T+ +       L E   +V  + G+++ +ER   ++ + +   +  +ATD+AAR
Sbjct: 260 AIVFTNTKTTADEVANGLIERGLKVAKIHGDVNPRERKRTMKQIENLDYQYVVATDLAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  V++ EL  + +  +HR+GRTGRAG  G+++ +     + R  +L +   + 
Sbjct: 320 GIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEK-MGIE 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
                  + E +   D  R  +     ++    E
Sbjct: 379 FKHVDWKNKEFVTLEDRNRRAKREAKRETADPRE 412


>gi|169608057|ref|XP_001797448.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
 gi|118575178|sp|Q0UMB9|DBP4_PHANO RecName: Full=ATP-dependent RNA helicase DBP4
 gi|111064626|gb|EAT85746.1| hypothetical protein SNOG_07095 [Phaeosphaeria nodorum SN15]
          Length = 803

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 115/487 (23%), Positives = 204/487 (41%), Gaps = 25/487 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P      + L    +  +T +Q   +   L+  D+L +A+TGSGKT++F + +   
Sbjct: 51  FSDLPLSDPTKQGLKACHFAVMTDIQRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLEN 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L       + A    AL ++PTRELA+Q+   L  +     +  A  + G       R  
Sbjct: 111 LYRLQHVGADA-GLGALILSPTRELAIQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQA 169

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +I+V TPGR+  H+       +  LK +VLDEAD +LD+GF+ D++ I+D  PK+R
Sbjct: 170 LPRMNILVATPGRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDVDAIIDYLPKER 229

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT S  ++          + V V+   ++     +    ++  L ++ + + + 
Sbjct: 230 QTLLFSATQSKKVSDLARLSLQDPEYVSVHAEDKSATPKSLQQNYIICPLEEKLDTLWSF 289

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRAR 296
           ++       +VF S+  +V    +        +  L     Q++ +           +  
Sbjct: 290 IQASKKSKILVFFSSAKAVRFVYESFRHMQPGIPLLHIHGRQKQGARLDTTAKFSSAKNS 349

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRR 355
              ATDVAARG+D P ++ VI  +   + +  +HR GRT R  R+G  V  + P   +  
Sbjct: 350 CLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEGM 409

Query: 356 AERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD----------EKKMV 404
            +RL  ++  V  +       ++I+E+      QDP      Q            +K   
Sbjct: 410 LKRLEAKKVPVEAINVRQKKRQSIKEQLQNMCFQDPALKYLGQKAFMTYVKSVYLQKDKE 469

Query: 405 DVLLAKHDPEKIAAGFL-----RIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
              L ++D E  AA        RI        ++    S  +      D+  A K     
Sbjct: 470 VFQLKEYDLEAFAASLGLPGTPRIKFLKDDNSKQKKQASRQTIEVSDSDEEEAPKAEKPV 529

Query: 460 RDNFKGS 466
           R  +   
Sbjct: 530 RTKYDRM 536


>gi|116750069|ref|YP_846756.1| DEAD/DEAH box helicase domain-containing protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699133|gb|ABK18321.1| DEAD/DEAH box helicase domain protein [Syntrophobacter fumaroxidans
           MPOB]
          Length = 533

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 116/369 (31%), Positives = 189/369 (51%), Gaps = 4/369 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA-STLLA 64
           ++P  I   +++  +   T +Q A+L   L   D    AQTG+GKT  F + +    L  
Sbjct: 122 DLPAPILRGIADAEFRYCTPIQAALLPHTLNGLDAAGRAQTGTGKTAVFIITMLTQFLRN 181

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA+Q+ +E   L   T        GG+   +++R L   
Sbjct: 182 PAPEGRRKGTPRALVLAPTRELALQIEKETHLLSRHTPFKSVAIFGGMDYEKQKRRLTGE 241

Query: 125 A-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRR 181
              IVV TPGRL D  R   L++S ++ +V+DEAD MLD+GF  D++ I+  +P   +R+
Sbjct: 242 VIDIVVATPGRLLDFKRQGDLHLSKVEILVIDEADRMLDMGFIPDVQRIIHYTPPKAQRQ 301

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT++  +T  A  + ++ V V I  E      ++ R ++  + ++   + N++  
Sbjct: 302 TMLFSATLTAEVTRFASQWTRNPVTVEIEPEQVAVDTVNQRVLITTIDEKFTLLFNMITR 361

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF + R    R T+ L  +      LSGE+ Q++R   L+  R+G+ RV +AT
Sbjct: 362 QNLDRVIVFTNRRDQARRLTERLGSYGISCALLSGEVDQKKRVKTLEEFRNGKIRVLVAT 421

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V +  +  +PE+ +HR GRTGRAG  G+SV    ++       L +
Sbjct: 422 DVAARGLHVEAVSHVFNYNMPMDPEDYVHRIGRTGRAGTSGISVSFASEDDSFLIPALEK 481

Query: 362 EANVSVVWE 370
                +  E
Sbjct: 482 YLGHEIHCE 490


>gi|119578005|gb|EAW57601.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_c [Homo
           sapiens]
          Length = 491

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 54  TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 113

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 114 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 168

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 169 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 228

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 229 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 288

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 289 TGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 348

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 349 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 408

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 409 TEDDKPLLRSVANVIQQAGCPVPE 432


>gi|27697141|gb|AAH41785.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Homo sapiens]
 gi|119578004|gb|EAW57600.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, isoform CRA_b [Homo
           sapiens]
          Length = 599

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 517 TEDDKPLLRSVANVIQQAGCPVPE 540


>gi|7023040|dbj|BAA91812.1| unnamed protein product [Homo sapiens]
          Length = 491

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 54  TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 113

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 114 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 168

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 169 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 228

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 229 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 288

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 289 TGKLLAVRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 348

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 349 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 408

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 409 TEDDKPLLRSVANVIQQAGCPVPE 432


>gi|115704798|ref|XP_780056.2| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
 gi|115951003|ref|XP_001192050.1| PREDICTED: similar to Ddx10 protein [Strongylocentrotus purpuratus]
          Length = 867

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 103/402 (25%), Positives = 176/402 (43%), Gaps = 9/402 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F + P  +    AL E GY   T +Q   +   L+  DVL +A+TGSGKT+AF + +
Sbjct: 61  IESFSDFPLSKRTLSALEEAGYKVPTEIQRGAIGLSLQGHDVLGAAKTGSGKTLAFLIPI 120

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    + +S      AL I+PTRELA Q    L  + A       + IGG  +  E 
Sbjct: 121 LECLY--RNSWSVPDGLGALVISPTRELAYQTFEVLCKVGANHDFSAGLIIGGKDLKTEM 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     +V      L            +LK +VLDEAD +LDLGF+  I+ ILD  P 
Sbjct: 179 ERIPKTNVVVCTPGRLLQHMDETACFESLNLKILVLDEADRILDLGFQRTIDAILDHLPA 238

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           +R+ L+FSAT + ++  LA+    +   V +   +   + +      ++  L  + + + 
Sbjct: 239 ERQTLLFSATQTKSVRDLARLSLLEPKYVAVHEHHTHSTPVQLEQSYIVCELEQKLDVLY 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++ H  +  +VF S+   V    +VL +    V  ++   S  +       +      
Sbjct: 299 SFIKAHMKQKTLVFMSSCKQVKYTFEVLCKLNPGVSVMALYGSMHQLRRMAVYEEFCVRE 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + V +ATD+AARG+D P +  V+  +   +    +HR GRT R  + G ++ V+  + + 
Sbjct: 359 SAVLLATDIAARGLDFPAVNWVVQLDCPEDSSTYIHRVGRTARYEKDGEALLVLLPSEEE 418

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDS 395
                     + +      P+     E+  Q      L L  
Sbjct: 419 AMVAEMETRRIPIEKIEVNPNKRFAIEKKLQSFCAQNLELKQ 460


>gi|224081379|ref|XP_002306390.1| predicted protein [Populus trichocarpa]
 gi|222855839|gb|EEE93386.1| predicted protein [Populus trichocarpa]
          Length = 402

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 105/377 (27%), Positives = 187/377 (49%), Gaps = 17/377 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   +   G+   +++Q+  L P ++ +DV+  AQ+G+GKT    L +   +    
Sbjct: 26  LKEDLLRGIYNYGFEKPSAIQQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVD--- 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + +    AL ++PTRELA Q  R +  +     + V  CIGG SV  + R L++G H
Sbjct: 83  ---TASREVQALILSPTRELAEQTQRVITVIGENINIQVHACIGGKSVGEDIRKLEHGVH 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +V GTPGR+CD I+ + L    ++ +VLDE+DEML  GF+D I  +    P + ++++ S
Sbjct: 140 VVSGTPGRVCDMIKRRSLRTRAIRVLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLIS 199

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNILRYHGAK 245
           AT+   I  +   +  D V++ +  +      I    V +     +   + ++       
Sbjct: 200 ATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTIT 259

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A++FC+T+  V   T  + E  F V ++ G++ Q+ER   +   R G  RV I TDV A
Sbjct: 260 QAVIFCNTKRKVDWLTAKMVEFNFTVSSMHGDMPQKERDAIMSNFRSGETRVLITTDVWA 319

Query: 306 RGIDLPDLELVI----------HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RG+D+     +           + +L +N E  +HR GR+GR GRKG+++  +  +  R 
Sbjct: 320 RGLDVQQASSLSSSSSIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIRI 379

Query: 356 AERLFREANVSVVWEPA 372
              + +  +  +   P 
Sbjct: 380 LRDIEQYYSTQIDEMPM 396


>gi|313231028|emb|CBY19026.1| unnamed protein product [Oikopleura dioica]
          Length = 588

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 211/462 (45%), Gaps = 15/462 (3%)

Query: 5   ENIPQVIGEALSE-RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           E + +   +A+++  GY N+  +Q   +   L  KDVL +A+TGSGKT+AF + +   + 
Sbjct: 118 EKVSEKTLQAITKGMGYSNMMPIQARSIPHLLTGKDVLAAAKTGSGKTLAFLVPIVELI- 176

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +F   +   A+ ++PTRELA+Q    L+ L         + +GG     E + LQN
Sbjct: 177 -TKLKFMNRNGTGAIILSPTRELAMQTFGVLKELMENHSQTFGLIMGGSDRKAEAKKLQN 235

Query: 124 GAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           G +I+V TPGRL DH++      + +L    +DEAD +L++GF ++++ I+   PKKR+ 
Sbjct: 236 GINILVATPGRLLDHLQNTANFMVKNLMCFCIDEADRILEVGFEEEMKSIVKLIPKKRQT 295

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENR---QHSDIDYRAVLVALSDRDNAIVNIL 239
           ++FSAT +  I  LA+   K         +++       ++   V+     R   +   L
Sbjct: 296 MLFSATQTKKIEDLARISLKKVPVYIGVDDDKSTATSDMLEQGYVMSEGDARIRILYTFL 355

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  K  +VF S+  SV    ++       V+++ G+  Q +R++      +    +  
Sbjct: 356 KKNKKKKIMVFFSSCMSVKFHYELFNYIDIPVLSIHGKQKQSKRTSTYFQFCNAETGIMF 415

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR--KGMSVFVIPQNMQRRAE 357
            TDVAARG+D+P ++ ++  +   +P+  +HR GR  R     KG ++  +         
Sbjct: 416 CTDVAARGLDIPAVDWIVQYDPPDDPKEYIHRVGRACRGDSTDKGHALLFLRPAEIGFLL 475

Query: 358 RLFREANVSVVWEPA-PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            L ++A V +       S  A  +   +++L+   +L+    +  K      A H    +
Sbjct: 476 YL-KKAKVPLSEFTIQESKVANIQNQLEKLLKTNYYLNQSAKEGYKSCVRAYASHSLRNV 534

Query: 417 ----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
                    ++ R+          + +   + +   D R  +
Sbjct: 535 FEVQTLDLKKVARSFGFDTPPWVDIGVAGVKRKGEKDGRKER 576


>gi|239940491|ref|ZP_04692428.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239986972|ref|ZP_04707636.1| putative DEAD-box RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291443920|ref|ZP_06583310.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346867|gb|EFE73771.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 539

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 118/364 (32%), Positives = 187/364 (51%), Gaps = 6/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 84  FADLDMPAALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 143

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R S   APLA+ + PTRELA QV   L        + +A  +GG+S+ ++   L
Sbjct: 144 ---TAGRRSEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL 200

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       +
Sbjct: 201 RRGAEVLVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFMPQVVALLKQVEADGQ 260

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       + +++   L  L + D   V     
Sbjct: 261 RMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHV-LHVLDETDKKAVATKIA 319

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +AT
Sbjct: 320 ARDGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVAT 379

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL +
Sbjct: 380 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPDEKREMTRLMQ 439

Query: 362 EANV 365
           +A +
Sbjct: 440 DAGI 443


>gi|60551791|gb|AAH90996.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Mus musculus]
          Length = 734

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQI 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 373

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 374 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 432

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 433 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 493 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523


>gi|302306975|ref|NP_983443.2| ACR040Wp [Ashbya gossypii ATCC 10895]
 gi|299788776|gb|AAS51267.2| ACR040Wp [Ashbya gossypii ATCC 10895]
          Length = 763

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 105/440 (23%), Positives = 196/440 (44%), Gaps = 24/440 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P      + L E  Y+ +T +Q A +   L+  DVL +A+TGSGKT+AF + +  
Sbjct: 42  TFQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLE 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   
Sbjct: 102 KLYHE--RWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMER 159

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 160 VSKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSR 219

Query: 181 RMLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + L+FSAT S ++                    +  ++     +++   + VAL D+ + 
Sbjct: 220 QTLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDI 279

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRD 292
           + + ++ H     IVF S+   V    +   +    +  +     Q++ +          
Sbjct: 280 LFSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSR 339

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +     +TDV ARGID P ++ VI  +   + +  +HR+GR+ R G+ G S+ ++    
Sbjct: 340 AQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQE 399

Query: 353 Q-----RRAERLFREANVSVVWEP----APSVEAIRERDAQ-RILQDPLFLDSIQGDE-- 400
           +     R   +L   + +++         P ++++  +D + + L    F+  ++     
Sbjct: 400 EDAFLARLKGKLIEPSKLNIKQSKRKSIKPQLQSLLFKDPELKYLAQKAFISYVRSIYIQ 459

Query: 401 KKMVDVLLAKHDPEKIAAGF 420
           K        +   E+ AA  
Sbjct: 460 KDTEVFKFNELPLEEFAASL 479


>gi|328856886|gb|EGG06005.1| hypothetical protein MELLADRAFT_36393 [Melampsora larici-populina
           98AG31]
          Length = 668

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/400 (25%), Positives = 170/400 (42%), Gaps = 17/400 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F +IP      + L    Y  LT +Q   L   L  KDVL +A+TGSGKT+AF + +   
Sbjct: 1   FTDIPISAATLKGLQAAKYTKLTPIQALSLPRALMGKDVLGAARTGSGKTLAFLIPVLEM 60

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++       AL I+PTRELAVQ+   L  +         + IGG S+  ER  L
Sbjct: 61  LY--RSKWGHMDGLGALVISPTRELAVQIFEVLRSIGKFHSFSAGLVIGGKSLEDERERL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++           +  G +  +L+ +VLDEAD +LD+GF + I  I+ S P  R+
Sbjct: 119 SKMNILIATPGRLQQHLEQTTGFDCDNLQVLVLDEADRILDMGFSNSINAIISSLPASRQ 178

Query: 182 MLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            L+FSAT + ++                A    +  +     ++    +++ L  + + +
Sbjct: 179 TLLFSATQTKSVKDLARLSLSEDPEYVAARETGVDRDLTTPKELHQSYMVIDLQSKMDYL 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
              L+ H     IVF S+   V    +        +  L     Q++       +     
Sbjct: 239 WTFLKTHLKNKMIVFLSSCKQVRFVYETFRHMRPGMPLLHLHGKQKQTKRLEIYERFSSS 298

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
                 ATD+AARG+D P ++ V+ A+   + +  +HR GRT R    G + +F++P   
Sbjct: 299 PEACLFATDIAARGLDFPSIDWVVQADCPEDLDTYVHRVGRTARYQSGGKALIFLLPSEE 358

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +    +   E  + V           R++  Q  LQ  +F
Sbjct: 359 EGMVSKWE-ERGIEVKKVKP---NDSRKQTIQHKLQAQMF 394


>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
 gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
          Length = 814

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 208/462 (45%), Gaps = 20/462 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +  
Sbjct: 298 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 357

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 358 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 414

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF +++  IL + PK 
Sbjct: 415 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 474

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      VR+ + S+ +    +              R   ++
Sbjct: 475 RQTMLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 534

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       IVF   +    R   V      +   L G +SQ++R  +++  RD +  
Sbjct: 535 FLCKTVYTNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 594

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 595 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 654

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           +   +                I  R  +  + D  + + +     ++ +VL  + + +++
Sbjct: 655 KEAVKAGRAQ--------GAKIVSRVIEPAVADK-WAEQVDDLATEVEEVLQEEKEEKQL 705

Query: 417 AAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           A   +++ R    +   EEI      +  +  +D   + K G
Sbjct: 706 AQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDKRASKKRG 747


>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
 gi|142982514|sp|A1CNV8|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
 gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
           NRRL 1]
          Length = 826

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/481 (25%), Positives = 215/481 (44%), Gaps = 18/481 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   +   T +Q+  +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 312 NLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 371

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T V     +GG S+  +   L+   
Sbjct: 372 PRKVPTSR---VAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILKKRP 428

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 429 DVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 488

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + S+     ++    V +       R   ++ +   
Sbjct: 489 FSATMTDSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLLYLCSE 548

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   V      +   L G +SQ++R  +++  R+G+    +AT
Sbjct: 549 IFTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGKVAFLLAT 608

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +     ++  +   R
Sbjct: 609 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVR 668

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                           I  R  +  + D  +   ++  E+++ +VL  +   + +A   +
Sbjct: 669 AGKAQ--------GAKIASRVVEPAVADQ-WAAKVEALEEEIEEVLKEEKLEKHMAQAEM 719

Query: 422 RIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           ++ +    +    EI      +  +  RD   + K+G    +         LS   K++ 
Sbjct: 720 QVTKGENLMKHGAEIMSRPKRTWFETERDKRASRKLGATELNGPSKKDKVKLSNKDKKRL 779

Query: 480 E 480
           +
Sbjct: 780 D 780


>gi|51261421|gb|AAH79986.1| LOC446276 protein [Xenopus laevis]
          Length = 587

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 168/412 (40%), Gaps = 23/412 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       I + + + G+   T +Q   +   L ++++L SA TGSGKT+AF +
Sbjct: 168 TFQQLEQEYKILSKIMQNVKDAGFHTPTPIQMQAIPIMLHDREILASAPTGSGKTMAFSI 227

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL I+PTRELA Q  REL  L    G  + V        +
Sbjct: 228 PILAHLQCPKNK-----GCRALVISPTRELASQTHRELVKLSDGIGFRIHVIDKAAVSAK 282

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 283 KFGPKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLA 342

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   +R +  +            +          A  +   +       + + 
Sbjct: 343 SIFVACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSVGARNSAVETVEQSLLFVGSE 402

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++++   A   +VF  +          L      V  +  E +QQ+R N +Q
Sbjct: 403 TGKLLAMRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQ 462

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V I T + ARGID   + +VI+ +  +     +HR GRTGRAG KG +V   
Sbjct: 463 SFREGKIWVLICTALLARGIDFKGVNMVINYDFPAGAVEYIHRIGRTGRAGHKGKAVSFF 522

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            ++ +   R    + ++A   +  +   S   ++++  +R+++ PL  D I+
Sbjct: 523 TEDDKPMLRSVASVIQKAGCPIP-DYIKSFRKLQKKQKKRMIKRPLKRDQIR 573


>gi|16716475|ref|NP_444413.1| ATP-dependent RNA helicase DDX50 [Mus musculus]
 gi|55976576|sp|Q99MJ9|DDX50_MOUSE RecName: Full=ATP-dependent RNA helicase DDX50; AltName: Full=DEAD
           box protein 50; AltName: Full=Gu-beta; AltName:
           Full=Nucleolar protein Gu2
 gi|13540306|gb|AAK29403.1|AF334104_1 nucleolar protein GU2 [Mus musculus]
          Length = 734

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQI 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 373

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 374 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 432

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 433 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 493 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523


>gi|320182099|gb|EFW57003.1| ATP-dependent RNA helicase SrmB [Shigella boydii ATCC 9905]
          Length = 444

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 181/384 (47%), Gaps = 8/384 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S   
Sbjct: 18  ALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--G 75

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  L + PTRELA+QV      L   T + +A   GGV+             IVV T G
Sbjct: 76  PPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTG 135

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISP 191
           RL  +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT     
Sbjct: 136 RLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDA 195

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                 +  +         S   +     +      L  +   +V++L+   A  +IVF 
Sbjct: 196 IQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFV 255

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+P
Sbjct: 256 RKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 315

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSV 367
           D   V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V
Sbjct: 316 DASHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 375

Query: 368 VWEPAPSVEAIRERDAQRILQDPL 391
           + E  P   A  E+   +  +  L
Sbjct: 376 IDELRPKTRAPSEKQTGKPSKKVL 399


>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
 gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
           50983]
          Length = 967

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 176/384 (45%), Gaps = 34/384 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +   L    
Sbjct: 38  LSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAFVIPMIQIL---- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   
Sbjct: 94  KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPD 153

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FS
Sbjct: 154 VLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFADDMQSILKATPPSRQCLLFS 213

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------------ 234
           AT+   +T  ++   +      I  +             +  +                 
Sbjct: 214 ATLPSQLTQFSRAGLRSESTEFIRLDVEHTISDTLDLWFLYTTADSKPAALVALLRKLQS 273

Query: 235 ------------------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
                                  +   +   IVF +TR +V  F  +L +       + G
Sbjct: 274 MGNKSTGDATGVAGVEGKSKGGKKGARSSKTIVFVATRHNVEFFASLLTQVGISNAPIYG 333

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
            + Q +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT 
Sbjct: 334 SMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTA 393

Query: 337 RAGRKGMSVFVIPQNMQRRAERLF 360
           RAG KG+   ++  +    A  L 
Sbjct: 394 RAGAKGLCASLVTHDDMPYAVELM 417


>gi|294658221|ref|XP_002770738.1| DEHA2F04466p [Debaryomyces hansenii CBS767]
 gi|218511822|sp|Q6BML1|PRP5_DEBHA RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|202952969|emb|CAR66268.1| DEHA2F04466p [Debaryomyces hansenii]
          Length = 913

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 114/414 (27%), Positives = 195/414 (47%), Gaps = 26/414 (6%)

Query: 7   IPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P  I   +     Y + +S+Q   +   +  +D++  A+TGSGKT++F L L   +  +
Sbjct: 323 LPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHI-QD 381

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                    P+ L + PTRELA+Q+ +EL     K  +    C GG S+  +  +L+ GA
Sbjct: 382 QPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGA 441

Query: 126 HIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            I+VGTPGR+ D      G+  N+  +  +VLDEAD M D+GF   +  +       R+ 
Sbjct: 442 QIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQVTKVFTRVRPDRQT 501

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----------RD 232
           ++FSAT    +  LAK    + + + +   +   S+I  +  L    D          + 
Sbjct: 502 VLFSATFPRKMELLAKKILDNPMEIVVGGISVVASEITQKVELFENEDDKSLEEAKFSKL 561

Query: 233 NAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
            + +N      A+  I +F   + +       L    +  +A+ G   Q +R +A++   
Sbjct: 562 LSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFS 621

Query: 292 DGR--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
                  + IAT +AARG+D+  L LVI+ E +S+ E+ +HR GRTGRAGRKG ++  + 
Sbjct: 622 SSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVS 681

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
               R    L +   +S V     S + I  R  +   +   FL+ ++  ++K 
Sbjct: 682 SKQGRAITDLVKAMRLSKV-----SEDEINPRLIEISTK---FLEGVKSGKEKY 727


>gi|294140317|ref|YP_003556295.1| DEAD box family ATP-dependent RNA helicase [Shewanella violacea
           DSS12]
 gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
           DSS12]
          Length = 431

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 119/394 (30%), Positives = 198/394 (50%), Gaps = 12/394 (3%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             FE +   P+ + + L+   Y+N T VQ   +   L  +D+L  A TGSGKT AF L +
Sbjct: 13  TTFEQLGLIPE-LLKRLTLLEYLNPTLVQGKAIPAVLLGRDLLAGAITGSGKTAAFALPM 71

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHR 116
              L   + + S  +    L + PTRELA QV    +      K  + +    GGVS + 
Sbjct: 72  LQKLAKSSAKVSKGNQVCGLVLVPTRELAQQVADSFKSYGQLIKPRLKIEAVFGGVSANT 131

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   ++ GA ++V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L   
Sbjct: 132 QMLAMRGGADVLVATPGRLLDLISSNAIKLDDVKTLVLDEADRMLSLGFTEELNQVLALL 191

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK ++ L+FSAT    + TL        V + I SE +       +   V  + +   + 
Sbjct: 192 PKHKQTLLFSATFPEEVKTLTDKLLSSPVEIQIQSEEQSTL--KQQVYTVNRTRKTALLA 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++++ +  +  +VF S + + +R  + LA+          + SQ  R+  L+  ++G   
Sbjct: 250 HLIKENNWRQVLVFASAKNTCNRLEQKLAKAGIAAQIFHSDKSQGARTKVLEAFKNGETH 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  
Sbjct: 310 VLIATDIAARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDP 390
           + + ++  + +  E     EA    D +  L  P
Sbjct: 370 KLIEKKNKIKLDREQVEGFEA----DDEAPLDCP 399


>gi|190576089|ref|YP_001973934.1| ATP-dependent RNA helicase RhlB [Stenotrophomonas maltophilia
           K279a]
 gi|190014011|emb|CAQ47651.1| putative ATP-dependent RNA helicase [Stenotrophomonas maltophilia
           K279a]
          Length = 574

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 5/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ +
Sbjct: 11  FSSFE-LHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVN 69

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL            P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R 
Sbjct: 70  RLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQRE 129

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ G  +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P+
Sbjct: 130 LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 189

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +       FSAT+S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++
Sbjct: 190 RTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLL 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        +VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  
Sbjct: 250 GLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +      
Sbjct: 310 ILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 369

Query: 357 ERLFREANVSVVWEPA 372
             +       +  EP 
Sbjct: 370 PDIEAYIEQKIPSEPV 385


>gi|148222272|ref|NP_001086456.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Xenopus laevis]
 gi|117167895|gb|AAI24841.1| LOC446276 protein [Xenopus laevis]
          Length = 614

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/441 (20%), Positives = 177/441 (40%), Gaps = 31/441 (7%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       I + + + G+   T +Q   +   L ++++L SA TGSGKT+AF +
Sbjct: 168 TFQQLEQEYKILSKIMQNVKDAGFHTPTPIQMQAIPIMLHDREILASAPTGSGKTMAFSI 227

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL I+PTRELA Q  REL  L    G  + V        +
Sbjct: 228 PILAHLQCPKNK-----GCRALVISPTRELASQTHRELVKLSDGIGFRIHVIDKAAVSAK 282

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
                 +    ++ T      ++  +      L +V     DE              +  
Sbjct: 283 RFGPKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLA 342

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   +R +  +            +          A  +   +       + + 
Sbjct: 343 SIFVACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSVGARNSAVETVEQSLLFVGSE 402

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++++   A   +VF  +          L      V  +  E +QQ+R N +Q
Sbjct: 403 TGKLLAMRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQ 462

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V I T + ARGID   + +VI+ +  +     +HR GRTGRAG KG +V   
Sbjct: 463 SFREGKIWVLICTALLARGIDFKGVNMVINYDFPAGAVEYIHRIGRTGRAGHKGKAVSFF 522

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI--------Q 397
            ++ +   R    + ++A   +  +   S   ++++  +R+++ PL  D I        +
Sbjct: 523 TEDDKPMLRSVASVIQKAGCPIP-DYIKSFRKLQKKQKKRMIKRPLKRDQIRTTPKYILE 581

Query: 398 GDEKKMVDVLLAKHDPEKIAA 418
             ++K   +     + EK++A
Sbjct: 582 KAKRKRNIIKRNLKEKEKVSA 602


>gi|45360981|ref|NP_989127.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Xenopus (Silurana)
           tropicalis]
 gi|38511935|gb|AAH61342.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
 gi|89272120|emb|CAJ82182.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Xenopus (Silurana)
           tropicalis]
          Length = 487

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 168/391 (42%), Gaps = 17/391 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 100 VKSFEELRLKPELLKGVYAMGFNRPSKIQENALPMMLAEPSQNLIAQSQSGTGKTAAFVL 159

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +   N        P  L ++PT ELA+Q G+ +E +   + + +A  + G  + R
Sbjct: 160 AMLSRVDPAN------KYPQCLCLSPTYELALQTGKVIEQMGQFSNIKLAYAVRGKKLER 213

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            ++  ++      GT    C  +R        +  +   +            I       
Sbjct: 214 GQKIPEHIVIGTPGTVLDWCSKLRFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQKMLP 273

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              + +L  +           K   +  +      E    +   Y     +  D+  A+ 
Sbjct: 274 RDCQMLLFSATFEESVWRFAQKVVPEPNIIKLKREEETLDTIKQYYVECHSREDKFRALC 333

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           NI        A++FC TR + S     L +   QV  LSGE+  ++R+  +   R+G+ +
Sbjct: 334 NIYGSITIAQAMIFCHTRKTASWLAGELYKEGHQVALLSGEMMVEQRAAVIDRFREGKEK 393

Query: 297 VCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP- 349
           V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++  
Sbjct: 394 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDG 453

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            +  +  +R+ +  +  +       ++ I +
Sbjct: 454 DHSMQILQRIQQHFSKKIAQLDTDDMDEIEK 484


>gi|332847931|ref|XP_001173155.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 isoform 2 [Pan
           troglodytes]
          Length = 599

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 517 TEDDKPLLRSVANVIQQAGCPVPE 540


>gi|297736780|emb|CBI25981.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/334 (31%), Positives = 174/334 (52%), Gaps = 4/334 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           +   G+ + T +Q       L+ +D++  A+TGSGKT+ + +     +L    R +  + 
Sbjct: 6   IYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAF--ILLRRRRNNVQNG 63

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  + +APTRELA Q+  E       + V  A   GG S + + ++L  GA +VV TPGR
Sbjct: 64  PTVMVLAPTRELATQIQDETIKFGRSSRVSCACLYGGTSRNAQLKELDRGADVVVATPGR 123

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
           L D +  K +++  +  +VLDEAD MLD+GF   I  I++  P +R+ LM++AT    + 
Sbjct: 124 LNDILESKKIDLGQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVR 183

Query: 195 TLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
            +A +   + V+VNI S +    +  I     +V+  ++   +  ILR     + ++   
Sbjct: 184 KIAGDLLVNPVQVNIGSVDELAANKAITQYVEVVSPPEKQRRLEQILRSQERGSKVIIFC 243

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +   +           F    + G+ SQ ER   L   R G++ + +ATDVAARG+D+ D
Sbjct: 244 STKKLCDQLARSIGRNFGAAVIHGDKSQVERDWVLNQFRSGKSPILVATDVAARGLDIKD 303

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           + +VI+ +  +  E+ +HR GRTGRAG  G + F
Sbjct: 304 IRVVINYDFPTGIEDYVHRIGRTGRAGATGWAWF 337


>gi|156095288|ref|XP_001613679.1| RNA helicase-1 [Plasmodium vivax SaI-1]
 gi|148802553|gb|EDL43952.1| RNA helicase-1, putative [Plasmodium vivax]
          Length = 667

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 184/390 (47%), Gaps = 27/390 (6%)

Query: 5   ENIPQVIGEALSERGY-------------VNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
            +IP  I +   +  +                T +Q   L   L  +D++  A TGSGKT
Sbjct: 211 SDIPPPI-KNFRDMKFPKPILKALKKKKIDKPTQIQMQGLPSILLGRDIIGIAFTGSGKT 269

Query: 52  VAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------ 103
           + F L L    L    R        PL L + P+RELA Q    +++             
Sbjct: 270 IVFVLPLVMICLEGELRCPIEEGEGPLGLIVCPSRELATQTHNVIKYFCEFLHQDKYPLL 329

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
                IGGVS   + R++Q G H+VV TPGRL D +  K + +   + +  DEAD ++DL
Sbjct: 330 RSLCMIGGVSTFDQGREIQKGMHMVVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDL 389

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF +++   LD   ++R+ L+FSAT+   I   AK+   + + +N+      + D+    
Sbjct: 390 GFEEEVRNTLDHFSRQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEV 449

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V    + + ++ +L+  G    ++FC  +  V    + L       +A+ G L Q ER
Sbjct: 450 EYVKEELKLSYLLEVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTER 508

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             A+ + R+G+  + + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G+
Sbjct: 509 QEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGI 568

Query: 344 SVFVIPQNMQR----RAERLFREANVSVVW 369
           +   I +N +       + L  EA   +  
Sbjct: 569 ATTFINKNQEEAILLDLKALLIEAKQKIPP 598


>gi|114667864|ref|XP_001173161.1| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 3 [Pan
           troglodytes]
          Length = 507

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 70  TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 129

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 130 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 184

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 185 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 244

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 245 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 304

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 305 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 364

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 365 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 424

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 425 TEDDKPLLRSVANVIQQAGCPVPE 448


>gi|114667862|ref|XP_511433.2| PREDICTED: ATP-dependent RNA helicase ROK1 isoform 4 [Pan
           troglodytes]
          Length = 599

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 162 TFQQLDQEYKINSRLLQNVLDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 222 PILMQLKQPANK-----GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 517 TEDDKPLLRSVANVIQQAGCPVPE 540


>gi|19075484|ref|NP_587984.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654533|sp|Q9Y7T7|PRP28_SCHPO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|4539604|emb|CAB40015.1| U5 snRNP-associated protein Prp28 (predicted) [Schizosaccharomyces
           pombe]
          Length = 662

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 185/369 (50%), Gaps = 23/369 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + + L +  Y   +S+Q A +   L+ KD++  A+TGSGKT AF + L   +    
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315

Query: 67  DRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P A+ +APTRELA Q+  E        G      +GG +   +   +  G
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
           AHIVV TPGRL D +  +   +S    VV+DEAD MLD+GF DD+  IL S P       
Sbjct: 376 AHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEK 435

Query: 179 -------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                        +R+ +MFSAT+ P +  LAK+Y  + V + I +  +    ++ R  +
Sbjct: 436 DGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEM 495

Query: 226 VALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
           ++   +    V  +      +   I+F + + ++    K L    +  V L G  SQ++R
Sbjct: 496 ISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQR 555

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             A++ +R+  A + +ATD+A RGID+P++ LV++  ++ + E+  HR GRTGRAG+ G 
Sbjct: 556 ERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGT 615

Query: 344 SVFVIPQNM 352
           ++  +    
Sbjct: 616 AITFLGPED 624


>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|74656492|sp|Q5ACK7|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
 gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
          Length = 613

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/475 (24%), Positives = 222/475 (46%), Gaps = 18/475 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + ++E  +   T +Q A +   L  KD++  AQTGSGKT A+ + +   LL + 
Sbjct: 137 LSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYK- 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
               P+++   + + PTRELA+QV    + L      + + + +GG+++ ++   L+   
Sbjct: 196 ----PSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP 251

Query: 126 HIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML- 183
            IV+ TPGRL DHIR     ++  ++ +V+DEAD ML+ GF+D++  IL   PK +R   
Sbjct: 252 DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQTL 311

Query: 184 -MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +   +     +  + QK    +    ++     +     +        A++  L   
Sbjct: 312 LFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLKG 371

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +   +VF + + +  R   VL     +V  L G L+Q++R   ++  +     V I TD
Sbjct: 372 VSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTD 431

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P +ELVI+ ++    E  LHR GRT RAGR G S+  + ++ Q RA  + + 
Sbjct: 432 LAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA--IVKS 489

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
           A V+     A +V+  +  +  ++L+    +     +E+K    LL        A+  ++
Sbjct: 490 AIVN-GKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIK 548

Query: 423 IHRAGLCAPE------EITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSL 471
             +     P+      E+       G+       +A +V      ++K +    +
Sbjct: 549 HEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRKDEGRSYKKTKTDRM 603


>gi|322827585|gb|EFZ31702.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 948

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 113/503 (22%), Positives = 199/503 (39%), Gaps = 34/503 (6%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +    +P  + + L+  G+    +VQ       +  +D+L++A+TGSGKT+A+ L L
Sbjct: 305 MRTWNGSGLPDSVLDLLAREGFEQPFAVQSLGSPALMSGRDLLITAKTGSGKTLAYLLPL 364

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +         P+ L   PTRELA Q+ +  E L     +      G   +    
Sbjct: 365 IRHCVGQEP-CGKGEGPIGLIFVPTRELAAQIAQLAEKLCVAAKLRFVSSYGLTPLADNI 423

Query: 119 RDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R  + G  ++V TPGRL D      G  +++     VV+DEAD M D GF + +E  L +
Sbjct: 424 RHCRAGCEVMVCTPGRLLDLLTVNGGAVISLRRTSFVVIDEADRMFDSGFMEHVEAFLKN 483

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----- 230
               R++ + SAT+   +  +   + +D V V +  +    S+++ R             
Sbjct: 484 IRPDRQLALISATMPKELKKVIMRHMQDPVEVTVGGKPTPASNVEQRFFFFDEEVYEVEE 543

Query: 231 ----------RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV--LAEHLFQVVALSGEL 278
                     +   I++     G    I+F   +              +  ++  L   +
Sbjct: 544 ANRTEDKKFLKLLQILSDEGGTGQHLIIIFAQRKEECDELFARLSACGYQKRIAVLYSGM 603

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
              +R  AL+    G   + IAT VA RG+D+P LELVI+  L  + E  +HR GRTGRA
Sbjct: 604 DPLDREFALEHFAPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRA 663

Query: 339 GRKGMSVFVI----PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LF 392
           G+KG +V         ++          A   V  E       +RE+  + I++     +
Sbjct: 664 GKKGKAVSFFMRGKDDDLSVELCEGLERAQQQVPEELYERAAKLREKRKEGIVRHNTGFY 723

Query: 393 LDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR---- 447
              ++  + +  D    +       AAG      A  C   +++        D       
Sbjct: 724 RGYMKAKKLRFTDRGQEEQFKAAARAAGLEEYLSASSCTDSDLSDGDEDGKEDGIEIVAV 783

Query: 448 DDSRAFKVGGGSRDNFKGSSWFS 470
            +      GG + ++      + 
Sbjct: 784 QEDGTRGGGGRNEEDSTALMLYR 806


>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas sp.
           MWYL1]
 gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
          Length = 448

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/433 (24%), Positives = 191/433 (44%), Gaps = 21/433 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +FE       I +++   G+   T +Q   +   +  +D+L S++TGSGKT+A+ L    
Sbjct: 2   LFEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPALH 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +     +      P  + + PTRELA QV  +L  L A +     +  GG + + + + 
Sbjct: 62  RVY--KKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF---RDDIEFILDSSP 177
           LQ   H +V TPGRL DH++ + + +  L+ +VLDEAD MLDLGF      I        
Sbjct: 120 LQKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQ 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           ++      +   +       +  ++ +        +       +  +   L  ++  + +
Sbjct: 180 RQTLFFSATLDNTEISEIAGELLREPSRVAIGQGFDEHTDISQHVLLCDHLDHKEALLKH 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L     K AIVF +T++   R ++++A       AL+G LSQ  R+  ++    G+  V
Sbjct: 240 LLVGQTIKQAIVFTATKSDTVRLSEIIAGWGLSTQALNGNLSQSARNKTMESFAKGQFDV 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---R 354
            ++TDVA+RG+D+  +  V + +L    E  +HR+GRTGRAG KG +  ++        +
Sbjct: 300 LVSTDVASRGLDIASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWVNFK 359

Query: 355 RAERLFR-----------EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
             E   +           EA    +  P P+ +  ++   +   +     +     + + 
Sbjct: 360 AIEVFLQKTFTTESIEGLEAKFKGLLPPKPARQETKKGSTKAPTKASKKTNKKPVGKARF 419

Query: 404 VDVLLAKHDPEKI 416
            D      D  K+
Sbjct: 420 HDNQQDGFDAFKL 432


>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 542

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 111/407 (27%), Positives = 208/407 (51%), Gaps = 18/407 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LAE 65
           + + + +A  E+GY   T +Q  I+   L  KDVL S+ TGSGKT AF L L       +
Sbjct: 98  LNKSLVKACHEQGYKYPTKIQAQIVPLVLAGKDVLASSCTGSGKTAAFLLPLMQRFGNTK 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           + ++S      AL + PTRELA+Q     + L   +    A+ IG V + ++  +L+   
Sbjct: 158 SQKYSK-----ALIVMPTRELALQCFEMFQKLNQFSHCTAALVIGAVPIQQQEAELRRYP 212

Query: 126 HIVVGTPGRLCD-HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGR+ D       +++S ++ +VLDEAD ++++GF  +I+ IL  +P+ R+ ++
Sbjct: 213 DIIIATPGRIVDIMKNSFSIDLSSIEVLVLDEADRLMEMGFEAEIKEILQQTPRDRQTVL 272

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRY 241
            SAT+   +  L+       V+V++   +     +    + +      DR+  ++ +L+ 
Sbjct: 273 VSATLKATVKQLSLLALHKPVKVSVDYVDGLAYGLKQYILRIDSDEEKDREATLIALLQQ 332

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  T+    R   +L         L G L+QQ+R  A +  ++G+ +  +AT
Sbjct: 333 KFIEKTIIFVRTKHDCHRLQILLGLKNLSSCELHGNLTQQQRIQAYEDFKEGKFQYLLAT 392

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ +++ VI+ E+       +HR GRT R G +G+SV +  +    + +++ +
Sbjct: 393 DLAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQMIK 452

Query: 362 EANVSV--VWEPAPSVEAIR------ERDAQRILQDPLFLDSIQGDE 400
           E+   +  +     S+E I+      E   ++I++  +F   I   E
Sbjct: 453 ESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTE 499


>gi|58177858|gb|AAH89107.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF + +   L    
Sbjct: 173 ISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPT 232

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL I+PTRELA Q+ REL  +   TG  + +        ++     +   
Sbjct: 233 NK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKF 287

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDDIEFILDSSPK 178
            ++ T      ++  +      L +V     DE              +    F+  +SPK
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR +  +            N          A  +   +       + + + +  A+  +
Sbjct: 348 VRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMREL 407

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  +          L      V  +  E +QQ+R N +   R G+  V 
Sbjct: 408 VKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 467

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V    ++ +   R 
Sbjct: 468 ICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRS 527

Query: 356 AERLFREANVSVVW 369
              + ++A   V  
Sbjct: 528 VANVIQQAGCPVPE 541


>gi|16758984|ref|NP_445977.1| probable ATP-dependent RNA helicase DDX52 [Rattus norvegicus]
 gi|34582286|sp|Q99PT0|DDX52_RAT RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; Short=rROK1L;
           AltName: Full=DEAD box protein 52
 gi|12862376|dbj|BAB32441.1| ROK1-like protein [Rattus norvegicus]
 gi|149053684|gb|EDM05501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Rattus norvegicus]
          Length = 598

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF + +   L    
Sbjct: 173 ISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPT 232

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL I+PTRELA Q+ REL  +   TG  + +        ++     +   
Sbjct: 233 NK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKF 287

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDDIEFILDSSPK 178
            ++ T      ++  +      L +V     DE              +    F+  +SPK
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR +  +            N          A  +   +       + + + +  A+  +
Sbjct: 348 VRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMREL 407

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  +          L      V  +  E +QQ+R N +   R G+  V 
Sbjct: 408 VKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 467

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V    ++ +   R 
Sbjct: 468 ICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRS 527

Query: 356 AERLFREANVSVVW 369
              + ++A   V  
Sbjct: 528 VANVIQQAGCPVPE 541


>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
          Length = 700

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 179/378 (47%), Gaps = 14/378 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +  
Sbjct: 297 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 356

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 357 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 413

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF +++  IL + PK 
Sbjct: 414 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 473

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      VR+ + S+ +    +              R   ++
Sbjct: 474 RQTMLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 533

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +   +   IVF   +    R   V      +   L G +SQ++R  +++  RD +  
Sbjct: 534 FLCKTVYSNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 593

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 594 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV 653

Query: 357 ERLFRE-----ANVSVVW 369
           +   +      A +S  W
Sbjct: 654 KEAVKAGRAQGAKISTTW 671


>gi|302869748|ref|YP_003838385.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572607|gb|ADL48809.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 417

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 186/378 (49%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L+ +G      +Q A +   L  +DVL   +TGSGKT+AFGL L        
Sbjct: 13  LAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHR---TA 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QV   L    A  G+  A  +GG+S+ R+   L+ GA 
Sbjct: 70  GRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAGAE 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L+      + ++FS
Sbjct: 130 VLVATPGRLHDLIDRGDARLDQVTITVLDEADQMADMGFLPQVTKLLEQVAPGGQRMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  ++       + + +  + +   D+  A+ +         
Sbjct: 190 ATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDKPAALAH--IAAREGR 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+    R  + L     +  AL G  SQ +R+  L+  R G+    +ATDVAAR
Sbjct: 248 TIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++A+  +  ++ LHR GRT RAG  G  V ++  + +R   RL   A ++
Sbjct: 308 GIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTAGIN 367

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P    +R  D++
Sbjct: 368 ------PKTTRVRAGDSE 379


>gi|67677953|gb|AAH97566.1| LOC446276 protein [Xenopus laevis]
          Length = 585

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 168/412 (40%), Gaps = 23/412 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       I + + + G+   T +Q   +   L ++++L SA TGSGKT+AF +
Sbjct: 168 TFQQLEQEYKILSKIMQNVKDAGFHTPTPIQMQAIPIMLHDREILASAPTGSGKTMAFSI 227

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L    ++        AL I+PTRELA Q  REL  L    G  + V        +
Sbjct: 228 PILAHLQCPKNK-----GCRALVISPTRELASQTHRELVKLSDGIGFRIHVIDKAAVSAK 282

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 283 KFGPKSSKKIDILVTTPNRLIYLLKQDPPGIDLSSVEWLIVDESDKLFEDGKTGFRDQLA 342

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   +R +  +            +          A  +   +       + + 
Sbjct: 343 SIFVACTSHLLKRAMFSATFAFDVEQWCKLHLDNVVSVSVGARNSAVETVEQSLLFVGSE 402

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+ ++++   A   +VF  +          L      V  +  E +QQ+R N +Q
Sbjct: 403 TGKLLAMRDLVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNVIQ 462

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+G+  V I T + ARGID   + +VI+ +  +     +HR GRTGRAG KG +V   
Sbjct: 463 SFREGKIWVLICTALLARGIDFKGVNMVINYDFPAGAVEYIHRIGRTGRAGHKGKAVSFF 522

Query: 349 PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            ++ +   R    + ++A   +  +   S   ++++  +R+++ PL  D I+
Sbjct: 523 TEDDKPMLRSVASVIQKAGCPIP-DYIKSFRKLQKKQKKRMIKRPLKRDQIR 573


>gi|294932648|ref|XP_002780372.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239890305|gb|EER12167.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 566

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 225/501 (44%), Gaps = 26/501 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +   
Sbjct: 70  KKFTDLQICDPLKEALTACSFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPAL 129

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRE 117
             L+    RF P +    + I+PTRELA+Q+    +      K      + +GGV+   E
Sbjct: 130 ELLV--ATRFQPKNGTGVMIISPTRELAMQIFDVCKRLVDSTKLSQTYGIVMGGVNRKNE 187

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L  G +I+V TPGRL DH++       ++L ++V+DEAD +L +GF +D+  IL   
Sbjct: 188 ADKLSRGINILVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKIL 247

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-----YRAVLVALSDR 231
           PKKR+  +FSAT +  +  LA+   K  + V     +   +           V+V   DR
Sbjct: 248 PKKRQTSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDR 307

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +   L+ +  K  +VF S+  SV    ++L      V+++ G+  Q  R        
Sbjct: 308 LRLLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFC 367

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQ 350
              + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R A   G ++  +  
Sbjct: 368 QMESGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMP 427

Query: 351 NMQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
                  R  R++ V+ + E    P+  A  +   +++++    L     D  +      
Sbjct: 428 EELGFL-RYLRKSGVTTLNEYVFPPAKVANIQHQLEKLVESNYHLHRASRDAYRSYLHAY 486

Query: 409 AKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG--GSRDN 462
           A H  +      +    ++ +    A      ++L   +   R   +  K G     + +
Sbjct: 487 AAHASKDCFDVHSLDLQKLAKCFGFAVPPKVDLNLKDTKKSDRGGRKMVKSGRFNKGQGD 546

Query: 463 FKGSSWFSLSVGSKQKAEARW 483
           F  S+ +    G K   + R 
Sbjct: 547 FSASNPY----GKKTNGDKRQ 563


>gi|221057708|ref|XP_002261362.1| DEAD/DEAH box ATP dependent DNA helicase [Plasmodium knowlesi
           strain H]
 gi|194247367|emb|CAQ40767.1| DEAD/DEAH box ATP dependent DNA helicase,putative [Plasmodium
           knowlesi strain H]
          Length = 605

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 203/419 (48%), Gaps = 10/419 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++   + + + L E  +V LT +Q   +   L  KD+L +A+TGSGKT+AF +   + 
Sbjct: 154 FDDLDICEALKKGLKELNFVTLTEIQAKCIPHFLNGKDILGAAKTGSGKTLAFLVPSINI 213

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N +F P +    L I+PTREL +Q+ +  + L         + IGG+S + E++  
Sbjct: 214 LY--NIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKF 271

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I++ TPGRL DH++        +L ++++DEAD +L +GF ++I  I+   PKKR
Sbjct: 272 IHGINILIATPGRLLDHMQNTKEFIYKNLISLIIDEADRLLQIGFEEEINLIVKRLPKKR 331

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT +  +  L +   +  + + + ++      +     LV    R   +   L+
Sbjct: 332 QTALFSATQTTKVENLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 391

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF +   SV  +  +L         + G+  Q +R  +       ++ + + 
Sbjct: 392 RNISKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNKRLKSFSEFSAAQSAILLC 451

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK--GMSVFVIPQNMQRRAER 358
           T+VAARG+D+P++  +I  +   + +  +HR GRT R G+   G ++  + ++  +    
Sbjct: 452 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCR-GKDSNGSAIIFLMKHELKFLNY 510

Query: 359 LFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L +  N+ +  +   PS     +   + I+     L  +  +  K        +  + +
Sbjct: 511 L-KFYNIPINQFAYDPSKLINVQSHIESIVTKNFHLHKMAREAFKSYLNGYITYALKDV 568


>gi|19113586|ref|NP_596794.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe 972h-]
 gi|74654494|sp|Q9HGM5|DBP8_SCHPO RecName: Full=ATP-dependent RNA helicase dbp8
 gi|9929273|emb|CAC05248.1| ATP-dependent RNA helicase Dbp8 (predicted) [Schizosaccharomyces
           pombe]
          Length = 453

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/427 (26%), Positives = 185/427 (43%), Gaps = 26/427 (6%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + + L        T +QE ++   L  ++ +  A+TGSGKT AF L + 
Sbjct: 7   KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                +       S   AL + PTRELA+Q+  +   L A   +  A+ +GG+ + R+  
Sbjct: 67  EKWSKDP------SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSI 120

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           DL    H+VV TPGRL D IR  G         +K +V+DEAD +L   F DD++     
Sbjct: 121 DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSV 180

Query: 176 SPKKRRMLM-------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            P                A           N     +           S +    + V+ 
Sbjct: 181 LPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSS 240

Query: 229 SDRDNA--IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
             R+     +  +  +  K+AI+F +   +      +L     +V  L  E+ Q+ER N+
Sbjct: 241 QVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINS 300

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R   A++ +ATDVA+RG+D+P ++LVI+ +L  +P++ +HR GRT RAGR G S+ 
Sbjct: 301 LGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESIS 360

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPS----VEAIRE-RDAQRILQDPLFLDSIQGDEK 401
           ++ +        +       +      S    +E I+E  DA+R     +         +
Sbjct: 361 IVTERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQ 420

Query: 402 KMVDVLL 408
           K  +  L
Sbjct: 421 KRNEKRL 427


>gi|254525036|ref|ZP_05137091.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
 gi|219722627|gb|EED41152.1| putative ATP-dependent RNA helicase [Stenotrophomonas sp. SKA14]
          Length = 565

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 187/376 (49%), Gaps = 5/376 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
              FE +   +   L   G+   T +Q   L   L   DV   AQTG+GKT+AF +A+ +
Sbjct: 3   FSSFE-LHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVN 61

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            LL            P AL +APTRELA+Q+ ++     +  G+  A+  GGV   ++R 
Sbjct: 62  RLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQRE 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ G  +++ TPGRL D+++   +   H  +  VLDEAD M DLGF  DI F+L   P+
Sbjct: 122 LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 181

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +       FSAT+S  +  LA  +  +  ++ + +E    + +  R    A  ++   ++
Sbjct: 182 RTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPADDEKIPLLL 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L        +VF +T+  V R  + L +  ++V  LSG++ Q++R + L   + G+  
Sbjct: 242 GLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLE 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVAARG+ +  ++ V + +L  + E+ +HR GRT R G +G ++    +      
Sbjct: 302 ILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGL 361

Query: 357 ERLFREANVSVVWEPA 372
             +       +  EP 
Sbjct: 362 PDIEAYIEQKIPSEPV 377


>gi|124088759|ref|XP_001347224.1| Nucleolar RNA helicase II [Paramecium tetraurelia strain d4-2]
 gi|50057613|emb|CAH03597.1| Nucleolar RNA helicase II, putative [Paramecium tetraurelia]
          Length = 664

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 195/433 (45%), Gaps = 21/433 (4%)

Query: 5   ENIPQVIG-----EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            N+   I      + L  RG  NL  +Q+          D++   +TGSGKT+A+ L + 
Sbjct: 25  SNLKAYIKNKQTRKVLEGRGISNLFPIQQQCFETIYNGDDIIGQDRTGSGKTLAYCLPIL 84

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL-YAKTGVVVAVCIGGVSVHRER 118
             +            P  L + PTRELA+QV  E   + + +    +    GG  +  + 
Sbjct: 85  ERI--RGLGLKQNKNPYVLVLLPTRELAIQVTTEFNTILHKENEYRIYSIYGGTDLRNQI 142

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             ++ G  IVVGTPGR+ D +  K L +  ++ VVLDEAD+ML+ GF+++IE I+    +
Sbjct: 143 DQVRQGCEIVVGTPGRIQDLLERKVLKLDEIQVVVLDEADQMLNFGFQENIEKIMSYFNE 202

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA---- 234
           ++  ++  +   P       +   +A   +I    R  +         AL    N     
Sbjct: 203 RKIQMLLFSATIPDWVKELSHKYMEANTKHINLIKRHETQTSTTVKHYALQCARNQLSGA 262

Query: 235 --IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              V  +        I+FC T+   +               L G++ QQ+R+   +  ++
Sbjct: 263 IGDVVSVYGGRHARTIIFCETKRECNEIILHSKLPAETQ-PLHGDIPQQQRTVTFEGFKN 321

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+ +  +AT+VAARG+D P ++L+I      + E+ +HRSGRTGRAG+ G+ +    +  
Sbjct: 322 GKFKCLVATNVAARGLDFPQVDLIIQCNPPKDIESYIHRSGRTGRAGKDGVCITFYSKKD 381

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRE---RDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
               ER+ R A +  +   AP  + I +   RD Q  LQ  +    I    + +   +++
Sbjct: 382 MGLIERVERVAKIKFIKISAPQHQDIIKASSRDLQTSLQ--VVSKEIVDMFQPVAQEIIS 439

Query: 410 KHDP-EKIAAGFL 421
           + DP E +A    
Sbjct: 440 RCDPVEALARALA 452


>gi|241889864|ref|ZP_04777162.1| putative ATP-dependent RNA helicase YqfR [Gemella haemolysans ATCC
           10379]
 gi|241863486|gb|EER67870.1| putative ATP-dependent RNA helicase YqfR [Gemella haemolysans ATCC
           10379]
          Length = 443

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 192/388 (49%), Gaps = 13/388 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE     + + +A+ + G+ N T +QE + +P L+ K+++  +QTGSGK+ +F L + 
Sbjct: 4   KSFEQYKFNEFVNKAVVDLGFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
           S L     +        ++ +APTREL+ Q+      + + +   + + +CIGG  ++R+
Sbjct: 64  SKLDVTKKK------TQSIILAPTRELSRQLYDMALHIASFSEEDIKITLCIGGQDLNRD 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              + N  HI++GTP R+ +  +   L I  ++++V+DE D M+DLGF +D++ I   + 
Sbjct: 118 IERVSNAPHIIIGTPTRVLELDKSSALAIKEVESLVIDECDMMIDLGFMEDVDKISKRAA 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + L+FSATI           +      +I  +N +   I+Y  +    S R   +  
Sbjct: 178 ENCQFLVFSATIP--TQMNHFLKKYLKNAQHIEVDNAKFGKIEYILIPEKSSSRLEKLHE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I        A++F + +  V   +  L      V  L G+L+ +ER    + + +     
Sbjct: 236 ITTVINPYLALIFANKKTEVEEVSSYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+D+ +RGID+  +  VI+  + ++ +  +HR+GRTGRAG  G  + +     + + +
Sbjct: 296 VVASDLMSRGIDIEGVSHVINFNIPNDLDFFIHRAGRTGRAGLSGDCITIYNNKDEEKLQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            L +   +    +   + E +  +D  +
Sbjct: 356 DLEKR-GIEFNHQDIRNGEFVEAKDRNK 382


>gi|227328700|ref|ZP_03832724.1| ATP-dependent RNA helicase DbpA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 434

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 198/384 (51%), Gaps = 12/384 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L   DV   A+TGSGKT AFG+ L   ++  +          AL + P
Sbjct: 1   MTPVQAATLPAVLSGADVRAKAKTGSGKTAAFGIGLLDRIVVSD------FTTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +EL  L      + +    GG  + ++   L +  HIVVGTPGR+ DH+R 
Sbjct: 55  TRELADQVSKELRRLARFAQNIKILTLCGGQPMGQQLDSLVHAPHIVVGTPGRIQDHLRK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
           + L++  LK +VLDEAD MLD+GF D I+ ++  +P  R+ L+FSAT    I  ++   Q
Sbjct: 115 QSLSLDSLKVLVLDEADRMLDMGFTDAIDDVISYTPTDRQTLLFSATYPEEIEQISARVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +   R  +A    + +  + R        R   ++ IL ++   + +VFC+T+       
Sbjct: 175 RQPQRFEVADGVEEPAI-EQRFYETTKEQRLPLLIAILGHYQPASCVVFCNTKRDCQSVF 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L      V AL G+L Q++R   L    +   RV +ATDVAARG+D+ +LELV++ EL
Sbjct: 234 DALDMRGISVSALHGDLEQRDRDQVLVRFANRSCRVLVATDVAARGLDIKELELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRTGRAG KG++V +       RA  +     + + W P+  +     R
Sbjct: 294 AFDPEVHVHRIGRTGRAGTKGLAVSLCTPQEMNRANLIEDYLGMRIKWTPSDEI----SR 349

Query: 382 DAQRILQDPLFLDSIQGDEKKMVD 405
             +  L+  +    I G  K  + 
Sbjct: 350 SGEVALEPEMMTLCIDGGRKAKIR 373



 Score = 56.9 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
              G            +  G K K     ++  L   +G+    +G I + P   +V + 
Sbjct: 348 SRSGEVALEPEMMTLCIDGGRKAKIRPGDILGALTGDAGLTAAEVGKIDMFPMHAYVAIR 407

Query: 515 ADGVDLLRRTVKLDK 529
                   + ++  K
Sbjct: 408 KASAKRALQQLQKGK 422


>gi|30264357|ref|NP_846734.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. Ames]
 gi|47529804|ref|YP_021153.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187184|ref|YP_030436.1| DEAD-box ATP dependent DNA helicase [Bacillus anthracis str.
           Sterne]
 gi|49481294|ref|YP_038344.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141217|ref|YP_085615.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus E33L]
 gi|65321660|ref|ZP_00394619.1| COG0513: Superfamily II DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|118479458|ref|YP_896609.1| DEAD-box ATP dependent DNA helicase [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872088|ref|ZP_02216728.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167634514|ref|ZP_02392834.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|167638543|ref|ZP_02396819.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|170687333|ref|ZP_02878550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190566188|ref|ZP_03019107.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|196034885|ref|ZP_03102292.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196041643|ref|ZP_03108935.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|196046361|ref|ZP_03113587.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|218905422|ref|YP_002453256.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225866267|ref|YP_002751645.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227817061|ref|YP_002817070.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228916918|ref|ZP_04080480.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929329|ref|ZP_04092354.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935605|ref|ZP_04098420.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947999|ref|ZP_04110285.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228987535|ref|ZP_04147654.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123824|ref|ZP_04253018.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|229157899|ref|ZP_04285973.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|229186526|ref|ZP_04313688.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|229604072|ref|YP_002868575.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|254684044|ref|ZP_05147904.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721878|ref|ZP_05183667.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. A1055]
 gi|254736393|ref|ZP_05194099.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741430|ref|ZP_05199117.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753933|ref|ZP_05205968.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Vollum]
 gi|254757805|ref|ZP_05209832.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           anthracis str. Australia 94]
 gi|301055779|ref|YP_003793990.1| DEAD/DEAH box family ATP-dependent RNA helicase [Bacillus anthracis
           CI]
 gi|30259015|gb|AAP28220.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Ames]
 gi|47504952|gb|AAT33628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49181111|gb|AAT56487.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. Sterne]
 gi|49332850|gb|AAT63496.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974686|gb|AAU16236.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           E33L]
 gi|118418683|gb|ABK87102.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           thuringiensis str. Al Hakam]
 gi|164712219|gb|EDR17756.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0488]
 gi|167513391|gb|EDR88761.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0193]
 gi|167529966|gb|EDR92701.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0442]
 gi|170668528|gb|EDT19274.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0465]
 gi|190563107|gb|EDV17073.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis Tsiankovskii-I]
 gi|195992424|gb|EDX56385.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           W]
 gi|196022831|gb|EDX61512.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB108]
 gi|196027631|gb|EDX66246.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           NVH0597-99]
 gi|218539590|gb|ACK91988.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH820]
 gi|225787455|gb|ACO27672.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           03BB102]
 gi|227005061|gb|ACP14804.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. CDC 684]
 gi|228596957|gb|EEK54615.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BGSC 6E1]
 gi|228625558|gb|EEK82311.1| ATP-dependent RNA helicase yqfR [Bacillus cereus ATCC 4342]
 gi|228659645|gb|EEL15291.1| ATP-dependent RNA helicase yqfR [Bacillus cereus 95/8201]
 gi|228772267|gb|EEM20714.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228811689|gb|EEM58024.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824045|gb|EEM69862.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830343|gb|EEM75955.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842742|gb|EEM87828.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268480|gb|ACQ50117.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus
           anthracis str. A0248]
 gi|300377948|gb|ADK06852.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           biovar anthracis str. CI]
          Length = 436

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPG 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|228923037|ref|ZP_04086330.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836670|gb|EEM82018.1| ATP-dependent RNA helicase yqfR [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 436

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|152993738|ref|YP_001359459.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
 gi|151425599|dbj|BAF73102.1| ATP-independent RNA helicase DbpA [Sulfurovum sp. NBC37-1]
          Length = 453

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/369 (32%), Positives = 199/369 (53%), Gaps = 13/369 (3%)

Query: 1   MKIFE---NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           M  F    NIP+ +   L   G+  +T +Q+  + P L+ KD+L  ++TGSGKT+AFG+ 
Sbjct: 1   MTAFNTIPNIPEALLGTLETLGFTTMTEIQQKSIGPILKGKDILAQSKTGSGKTLAFGIP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHR 116
                  ++++      P  + I PTRELA QV  EL  + A    + +    GGV +  
Sbjct: 61  AVMGTDVKSNK------PQTIVITPTRELAEQVAMELRKIAAYKANLKILTLYGGVPLRA 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L  GAHI++GTPGR+ DH+    L +  +K +VLDEAD MLD+GF ++I  I  + 
Sbjct: 115 QADSLAKGAHILIGTPGRIQDHLAKGTLTLESIKTLVLDEADRMLDMGFYEEIIKIGSNM 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+++ L+FSAT  P I +LAK   KD + + + +        +         D+   + 
Sbjct: 175 PKQKQTLLFSATFPPKIESLAKALLKDPLTIKVDTVQEAMKINELVYETP---DKFKTLN 231

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +   + ++FC+T+A V      L +    V+ + G+L Q+ER+ A+ +  +   R
Sbjct: 232 ALIGSYKPDSLLIFCNTKAEVISLADRLQQRGHSVIDIHGDLDQRERNEAVILFSNRSKR 291

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +ATDVA+RG+D+ D+ LVI+ +L  + E   HR GRTGRA   GM++ +   N   + 
Sbjct: 292 IMVATDVASRGLDIKDISLVINYDLPFDKEVYTHRIGRTGRADATGMAISLYAPNDSEKC 351

Query: 357 ERLFREANV 365
             +  +A  
Sbjct: 352 SWITSQAKQ 360



 Score = 47.3 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
           L+ G K K  A  ++   C+  GI+   IG I +     ++ +    VD + + +
Sbjct: 383 LNGGKKTKLRAGDILGTFCKEIGIDNTEIGKIIITDTKAYIALHHTVVDKVLKAL 437


>gi|149724020|ref|XP_001503919.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Equus
           caballus]
          Length = 597

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 151/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 160 TFQQLEQEYKINSQLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 219

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 220 PILMQLKQPTNK-----GFRALIISPTRELASQIHRELVKISEGTGFRIHMIHKAAVAAK 274

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 275 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLIVDESDKLFEDGKTGFRDQLA 334

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 335 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAVETVEQELLFVGSE 394

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +        + L      V  +  + +QQ+R N + 
Sbjct: 395 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFRELIYEGVNVDVIHADRTQQQRDNTVH 454

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 455 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 514

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 515 TEDDKPLLRSVANVIQQAGCPVPE 538


>gi|316965399|gb|EFV50121.1| putative DEAD/DEAH box helicase [Trichinella spiralis]
          Length = 1007

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/411 (29%), Positives = 201/411 (48%), Gaps = 29/411 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P  I + + + GY   T +Q   +   L+ +DV+  A+TGSGKT AF + L   ++ + 
Sbjct: 589 FPTEILDVIMKIGYTEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLCFVMIKR 648

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P A+ +APTRELA Q+  E        GV     IGG+S   +   L+ G  
Sbjct: 649 EE-DVDQGPYAVIMAPTRELAQQIEEEANKFGGPLGVRTVSVIGGLSREEQGFKLRMGCE 707

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP--------- 177
           IV+ TPGRL D +  + L ++    V+LDEAD+MLD+GF   ++ IL   P         
Sbjct: 708 IVIATPGRLVDVLENRYLVLNQCTYVILDEADKMLDMGFEPYVQNILSYMPVTNLKPDTE 767

Query: 178 ----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                           K R+ +MF+AT+S A+  LA+NY +    V I +  +    ++ 
Sbjct: 768 EAEDEKALLNNFYSKKKFRQTVMFTATMSSAVERLARNYLRRPAVVYIGAIGKPTERVEQ 827

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              +V+ S++   +V IL        I+F + +       + L +  F   AL G   Q 
Sbjct: 828 IVYMVSESEKRKKLVQILEKGIEPPIIIFVNQKKGADLLARGLEKLGFNPCALHGGKGQD 887

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
            R  AL  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRAG+ 
Sbjct: 888 ARDYALASLKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKS 947

Query: 342 GMSVFVIPQNMQR---RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           G ++  + +   +     ++L  E+ VS       +    +++  Q +++ 
Sbjct: 948 GKAITFLTKEDNQVFYDLKQLLLESPVSSCPAELANHPDAQKKPGQFVVKK 998


>gi|297625843|ref|YP_003687606.1| hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296921608|emb|CBL56162.1| Hypothetical protein PFREUD_06320 [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1043

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 138/420 (32%), Positives = 200/420 (47%), Gaps = 18/420 (4%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            +PQ I E L  +G +    +Q+A +   L  +DVL   QTGSGKT+AFG+ + + L A  
Sbjct: 621  VPQPIVEELDSQGILAPFPIQQAAIPDALSGRDVLGRGQTGSGKTLAFGIPVITRLAASG 680

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                    P AL +APTRELA QV   L  L    G+   +  GG+S   + R L+ G  
Sbjct: 681  TGH--GRQPRALLMAPTRELAQQVNDVLFPLAKAMGLSTILVAGGMSYTPQLRALERGVD 738

Query: 127  IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            IVV TPGRL D I      +  ++ VVLDEADEM D+GF  D+  ILD   ++ + L+FS
Sbjct: 739  IVVATPGRLIDLIERGSAKLGEVQEVVLDEADEMADMGFMPDVTRILDEISREAQHLLFS 798

Query: 187  ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
            AT+   + T+ + Y  D V   + S     + + +    V   D+    +     +    
Sbjct: 799  ATLDRQVDTIVRRYMHDPVEHGVDSAKASVTTMRHELWTVNARDKAA--IIAQAANRPGR 856

Query: 247  AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
             +VF  T+    R  + L +      AL G L Q  R+  L   R GR  V +ATDVAAR
Sbjct: 857  TLVFVRTQRDADRTAEQLRDLGLMAGALHGGLPQGMRARVLYAFRQGRVPVLVATDVAAR 916

Query: 307  GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
            GID+ D+ LV+ A+   + ++ LHR+GRT RAG  G+   ++    + R  R+ R+A V+
Sbjct: 917  GIDVDDVSLVLQADPPHDSKDYLHRAGRTARAGEDGLVATLVLPRARGRMARIMRDAGVN 976

Query: 367  VVWEPA--------------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
                P               P  E +RE   + I+  P  +    G   K       K  
Sbjct: 977  ERPHPMRPGDRLEELTGGTEPHDEPVREEQYRAIIAPPRPVKRRGGGHYKGKPWQRRKSS 1036


>gi|149511217|ref|XP_001519340.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 757

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/421 (27%), Positives = 196/421 (46%), Gaps = 17/421 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q          KDV+  A+TG+GKT +F + L   
Sbjct: 174 FSNFSISKETIQLLKARGVTYLFPIQAKTFGHVSSGKDVIAQARTGTGKTFSFAIPLIEK 233

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +         P  L + PTRELA+QVGR+   +  K    VA   GG + + +   +
Sbjct: 234 LQRDLKDQKRGRLPKVLVLTPTRELAIQVGRDFSDITKKL--TVACFYGGTAYNGQINHI 291

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   LN++ L+ VVLDE D+MLD+GF + +E IL  + KK  
Sbjct: 292 RNGIDILVGTPGRIRDHIQSGRLNLTSLQHVVLDEVDQMLDMGFAEQVEEILSVAYKKDS 351

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--AVLVALSDRDNA----- 234
                  +  A                   +         +    +  L+ + +      
Sbjct: 352 EDNPQTLLFSATCPHWVYDVAKKYMKVKYEQVDLIGKKTQKTAMTVEHLAIKCHWAQRAA 411

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        IVFC T+   +  +   A          G++ Q++R   L+  R
Sbjct: 412 VIGTVIQVYSGTHGRTIVFCRTKKEATELSLSPAIKQDAQSLH-GDIPQKQREITLKGFR 470

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +AT+VAARG+D+P+++LV+ +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 471 SGAFGVLVATNVAARGLDIPEVDLVVQSSPPEDVESYIHRSGRTGRAGRTGICVCFYQAK 530

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLA 409
            + +  ++ ++A ++      P+   + +  ++ +L+  D + L +I   ++   +++  
Sbjct: 531 EEYQLSQVEQKAGITFKRIGVPTTSEVVKASSKDVLRSLDSIPLHAINYFKQPARELIEE 590

Query: 410 K 410
           K
Sbjct: 591 K 591


>gi|24584994|ref|NP_609888.2| CG10333 [Drosophila melanogaster]
 gi|22946759|gb|AAF53680.2| CG10333 [Drosophila melanogaster]
 gi|60677727|gb|AAX33370.1| RH55640p [Drosophila melanogaster]
          Length = 822

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 399 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 458

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 459 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 518

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 519 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 578

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 579 KPDTEEAEDETKLMENFYTKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 638

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 639 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 759 RAGKTGCAISFVTKDDSALFYDL 781


>gi|74694962|sp|Q75C76|DBP4_ASHGO RecName: Full=ATP-dependent RNA helicase DBP4
          Length = 763

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/440 (23%), Positives = 196/440 (44%), Gaps = 24/440 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P      + L E  Y+ +T +Q A +   L+  DVL +A+TGSGKT+AF + +  
Sbjct: 42  TFQDLPISSGTVKGLKEAAYIKMTDIQRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLE 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   
Sbjct: 102 KLYHE--RWTELDGLGALVISPTRELAMQIYEVLVKIGKYMSFSAGLVIGGKDVKFEMER 159

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 160 VSKINILIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSR 219

Query: 181 RMLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + L+FSAT S ++                    +  ++     +++   + VAL D+ + 
Sbjct: 220 QTLLFSATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFYIQVALPDKLDI 279

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRD 292
           + + ++ H     IVF S+   V    +   +    +  +     Q++ +          
Sbjct: 280 LFSFIKSHLKSKMIVFLSSSKQVHFVYETFRKMQPGISLMHLHGRQKQTARTETLDKFSR 339

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +     +TDV ARGID P ++ VI  +   + +  +HR+GR+ R G+ G S+ ++    
Sbjct: 340 AQHVCLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHRAGRSARYGKTGKSLLMLTPQE 399

Query: 353 Q-----RRAERLFREANVSVVWEP----APSVEAIRERDAQ-RILQDPLFLDSIQGDE-- 400
           +     R   +L   + +++         P ++++  +D + + L    F+  ++     
Sbjct: 400 KYAFLARLKGKLIEPSKLNIKQSKRKSIKPQLQSLLFKDPELKYLAQKAFISYVRSIYIQ 459

Query: 401 KKMVDVLLAKHDPEKIAAGF 420
           K        +   E+ AA  
Sbjct: 460 KDTEVFKFNELPLEEFAASL 479


>gi|307103042|gb|EFN51307.1| hypothetical protein CHLNCDRAFT_28229 [Chlorella variabilis]
          Length = 518

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 193/446 (43%), Gaps = 19/446 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+ +P  +   + L E  Y +LT+VQ A L   L  +DVL +A+TGSGKT+AF L + 
Sbjct: 68  KRFDELPISEYSKQGLREAKYFSLTAVQRAALPHALCGRDVLGAAKTGSGKTLAFLLPVV 127

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     R+S      AL I+PTRELA+Q+  EL  +  +      + IGG  V  E+ 
Sbjct: 128 EKLY--RARWSKLDGLGALVISPTRELALQIFDELRKVGRRHDFSAGLLIGGKDVKEEQA 185

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     +V      L       G +   L+ +VLDEAD +LD+GF   +  I+ + P++
Sbjct: 186 RVHGMNILVCTPGRLLQHMDETPGFDAGQLQVLVLDEADRILDMGFSATLNAIVANIPRQ 245

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT + ++           + + V+  +       +    ++  L  + + + +
Sbjct: 246 RQTLLFSATQTKSVKDLARLSLKDPEYISVHAEAAAPTPLRLQQAYMVCELPQKLDILWS 305

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRA 295
            ++ H     IVF ST   V    +   +    V   +      +           + +A
Sbjct: 306 FIKTHLKAKTIVFVSTCKQVRFLFEAFRKLRPGVPLRALHGKMNQYKRMGVFYEFCEAKA 365

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V  ATD+AARG+D P ++ V+ A+   +    +HR GRT R    G  + ++  + +  
Sbjct: 366 MVLFATDIAARGLDFPTIDWVVQADCPEDVPAYIHRVGRTARYMSSGKGLLLLVPSEKEG 425

Query: 356 AERLFREANVSV---------VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                 EA V +         V   AP+++A+  +D +  L++      +       +  
Sbjct: 426 MLAQLEEAKVPMKQLKHNPSKVQPVAPALQALLSKDGE--LKEVAQRALVSYLRSVFLQP 483

Query: 407 LLAKHDPEKIAAGFLRIHRAGLCAPE 432
                D  ++ A           AP+
Sbjct: 484 NRKVFDVTQLPAAEFAYSMGLPTAPK 509


>gi|255658992|ref|ZP_05404401.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mitsuokella
           multacida DSM 20544]
 gi|260848951|gb|EEX68958.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Mitsuokella
           multacida DSM 20544]
          Length = 418

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 177/375 (47%), Gaps = 11/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++   + + EAL+++     T +Q+  +   L   D+L  A TG+GKT+A+ L +
Sbjct: 1   MKTFRDLGVSEALIEALADKNIKAPTPIQQQAIPKILAGTDILGVAPTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHR 116
              L  E           A+ +APT ELA+Q+  E       A  G+ V   IGG ++ R
Sbjct: 61  LMQLDKERREA------QAVVLAPTYELAMQITGEARDLSQKAGLGIRVQGLIGGANIAR 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+    +VVG+ GR+ +  R   L ++ ++ +VLDE D +LD         ++   
Sbjct: 115 QIDKLKEKPQLVVGSAGRILELARKGKLKLTGVRFLVLDEFDRLLDDQNDMTTADVVKLL 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+ R+ LMFSAT        A             S     +   Y   +     +   + 
Sbjct: 175 PQDRQALMFSATDPKKERERASFLGHPERIEIEQSAEEIAACHHYFVTVPFRE-KIERVR 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + R    +  +VF +   +  +    L     +  +L G+ ++Q R +A+  ++ GRA+
Sbjct: 234 KLTRSLPIERGLVFINRTFAAEQTLAKLRYEGIRAESLLGKDAKQSRQSAIAAIKGGRAQ 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + ++TD+AARG+D+P ++ VI+ +   + +   HR+GRT RAG +G  + +I      + 
Sbjct: 294 LLLSTDLAARGLDIPAVDYVINLDFPESAQVYQHRAGRTARAGHQGAVITLIDFKEAVKL 353

Query: 357 ERLFREANVSVVWEP 371
           E+L ++  +     P
Sbjct: 354 EQLGKKLGIEFERLP 368


>gi|149038674|gb|EDL92963.1| rCG22084, isoform CRA_b [Rattus norvegicus]
          Length = 689

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLN--VACFYGGTSYQSQINQI 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKSDS 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 373

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 374 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 432

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 433 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 493 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523


>gi|308370192|ref|ZP_07420594.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308378233|ref|ZP_07481964.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308380612|ref|ZP_07490534.2| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308406085|ref|ZP_07669502.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
 gi|308325014|gb|EFP13865.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu002]
 gi|308353157|gb|EFP42008.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu009]
 gi|308360899|gb|EFP49750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu011]
 gi|308364543|gb|EFP53394.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu012]
          Length = 524

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 18/376 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I  AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L 
Sbjct: 7   STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------------GVVV 105
             + + +       AP AL + PTREL +QV  +L                      + V
Sbjct: 67  QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 126

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG     +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF
Sbjct: 127 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 186

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRA 223
             DIE IL   P  R+ ++FSAT+   I T       +   +R      +  H   +   
Sbjct: 187 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 246

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
                 D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R
Sbjct: 247 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 306

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+
Sbjct: 307 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 366

Query: 344 SVFVIPQNMQRRAERL 359
           +V ++  +   R   +
Sbjct: 367 AVTLVDWDELPRWSMI 382


>gi|289571435|ref|ZP_06451662.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
 gi|289545189|gb|EFD48837.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase rhlE [Mycobacterium
           tuberculosis T17]
          Length = 489

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 18/376 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I  AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L 
Sbjct: 10  STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------------GVVV 105
             + + +       AP AL + PTREL +QV  +L                      + V
Sbjct: 70  QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG     +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF
Sbjct: 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRA 223
             DIE IL   P  R+ ++FSAT+   I T       +   +R      +  H   +   
Sbjct: 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
                 D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R
Sbjct: 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 344 SVFVIPQNMQRRAERL 359
           +V ++  +   R   +
Sbjct: 370 AVTLVDWDELPRWSMI 385


>gi|219559266|ref|ZP_03538342.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T17]
          Length = 508

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 18/376 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I  AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L 
Sbjct: 7   STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 66

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------------GVVV 105
             + + +       AP AL + PTREL +QV  +L                      + V
Sbjct: 67  QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 126

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG     +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF
Sbjct: 127 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 186

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRA 223
             DIE IL   P  R+ ++FSAT+   I T       +   +R      +  H   +   
Sbjct: 187 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 246

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
                 D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R
Sbjct: 247 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 306

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+
Sbjct: 307 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 366

Query: 344 SVFVIPQNMQRRAERL 359
           +V ++  +   R   +
Sbjct: 367 AVTLVDWDELPRWSMI 382


>gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa Japonica Group]
 gi|113532828|dbj|BAF05211.1| Os01g0549700 [Oryza sativa Japonica Group]
          Length = 495

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 181/370 (48%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 121 LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 180

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +        AL +  TRELA Q+  E E        V      G    ++ +D    + 
Sbjct: 181 GQVG------ALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDC 234

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+MLD    R D++ I   +P  ++++
Sbjct: 235 PHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVM 294

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 295 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 354

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 355 DFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATD 414

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +   +      ++  
Sbjct: 415 LVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 474

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 475 RFEVDIKELP 484


>gi|31794389|ref|NP_856882.1| ATP-dependent RNA helicase RhlE [Mycobacterium bovis AF2122/97]
 gi|31619985|emb|CAD95329.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium bovis
           AF2122/97]
          Length = 527

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 18/376 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I  AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L 
Sbjct: 10  STFAKLGARDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------------GVVV 105
             + + +       AP AL + PTREL +QV  +L                      + V
Sbjct: 70  QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG     +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF
Sbjct: 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRA 223
             DIE IL   P  R+ ++FSAT+   I T       +   +R      +  H   +   
Sbjct: 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
                 D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R
Sbjct: 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 344 SVFVIPQNMQRRAERL 359
           +V ++  +   R   +
Sbjct: 370 AVTLVDWDELPRWSMI 385


>gi|15610347|ref|NP_217727.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Rv]
 gi|15842798|ref|NP_337835.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121639098|ref|YP_979322.1| putative ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663072|ref|YP_001284595.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148824410|ref|YP_001289164.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|167968329|ref|ZP_02550606.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis H37Ra]
 gi|215405221|ref|ZP_03417402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|215413087|ref|ZP_03421788.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432173|ref|ZP_03430092.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|215447511|ref|ZP_03434263.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|224991590|ref|YP_002646279.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800250|ref|YP_003033251.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|254233823|ref|ZP_04927148.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|254365837|ref|ZP_04981882.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552311|ref|ZP_05142758.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260188256|ref|ZP_05765730.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|260202366|ref|ZP_05769857.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|260206559|ref|ZP_05774050.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289444785|ref|ZP_06434529.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289448897|ref|ZP_06438641.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289555487|ref|ZP_06444697.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289575929|ref|ZP_06456156.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289747027|ref|ZP_06506405.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289755331|ref|ZP_06514709.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289759347|ref|ZP_06518725.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|294993850|ref|ZP_06799541.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis 210]
 gi|297635860|ref|ZP_06953640.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
 gi|297732857|ref|ZP_06961975.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           R506]
 gi|298526689|ref|ZP_07014098.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|306777536|ref|ZP_07415873.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|306786080|ref|ZP_07424402.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|306790447|ref|ZP_07428769.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|306794968|ref|ZP_07433270.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|306799169|ref|ZP_07437471.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|306805014|ref|ZP_07441682.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|306809200|ref|ZP_07445868.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|306973655|ref|ZP_07486316.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|313660190|ref|ZP_07817070.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           V2475]
 gi|2072674|emb|CAB08305.1| PROBABLE ATP-DEPENDENT RNA HELICASE RHLE [Mycobacterium
           tuberculosis H37Rv]
 gi|13883125|gb|AAK47649.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           CDC1551]
 gi|121494746|emb|CAL73227.1| Probable ATP-dependent RNA helicase rhlE [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599352|gb|EAY58456.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis C]
 gi|134151350|gb|EBA43395.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507224|gb|ABQ75033.1| ATP-dependent RNA helicase RhlE [Mycobacterium tuberculosis H37Ra]
 gi|148722937|gb|ABR07562.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis F11]
 gi|224774705|dbj|BAH27511.1| putative ATP-dependent RNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321753|gb|ACT26356.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           1435]
 gi|289417704|gb|EFD14944.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T46]
 gi|289421855|gb|EFD19056.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis CPHL_A]
 gi|289440119|gb|EFD22612.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           605]
 gi|289540360|gb|EFD44938.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis K85]
 gi|289687555|gb|EFD55043.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           02_1987]
 gi|289695918|gb|EFD63347.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis EAS054]
 gi|289714911|gb|EFD78923.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis T85]
 gi|298496483|gb|EFI31777.1| ATP-dependent RNA helicase DeaD [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214084|gb|EFO73483.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu001]
 gi|308329234|gb|EFP18085.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu003]
 gi|308333066|gb|EFP21917.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu004]
 gi|308336752|gb|EFP25603.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu005]
 gi|308340590|gb|EFP29441.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu006]
 gi|308344527|gb|EFP33378.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu007]
 gi|308348323|gb|EFP37174.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu008]
 gi|308356899|gb|EFP45750.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           SUMu010]
 gi|323718078|gb|EGB27260.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis
           CDC1551A]
 gi|326902560|gb|EGE49493.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis W-148]
 gi|328459985|gb|AEB05408.1| ATP-dependent RNA helicase rhlE [Mycobacterium tuberculosis KZN
           4207]
          Length = 527

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 177/376 (47%), Gaps = 18/376 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F  +     I  AL E G     ++QE  L   L  +DV+  A+TG GKT AFG+ L 
Sbjct: 10  STFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--------------GVVV 105
             + + +       AP AL + PTREL +QV  +L                      + V
Sbjct: 70  QRITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSV 129

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
               GG     +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF
Sbjct: 130 VSIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGF 189

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRA 223
             DIE IL   P  R+ ++FSAT+   I T       +   +R      +  H   +   
Sbjct: 190 LPDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFV 249

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
                 D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R
Sbjct: 250 YRAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             AL+  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369

Query: 344 SVFVIPQNMQRRAERL 359
           +V ++  +   R   +
Sbjct: 370 AVTLVDWDELPRWSMI 385


>gi|119351039|gb|ABL63415.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF + +   L    
Sbjct: 173 ISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPT 232

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL I+PTRELA Q+ REL  +   TG  + +        ++     +   
Sbjct: 233 NK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKF 287

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDDIEFILDSSPK 178
            ++ T      ++  +      L +V     DE              +    F+  +SPK
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR +  +            N          A  +   +       + + + +  A+  +
Sbjct: 348 VRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMREL 407

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  +          L      V  +  E +QQ+R N +   R G+  V 
Sbjct: 408 VKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 467

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V    ++ +   R 
Sbjct: 468 ICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRS 527

Query: 356 AERLFREANVSVVW 369
              + ++A   V  
Sbjct: 528 VANVIQQAGCPVPE 541


>gi|119351037|gb|ABL63414.1| ATP-dependent RNA helicase [Rattus norvegicus]
          Length = 598

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 148/374 (39%), Gaps = 16/374 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I   + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF + +   L    
Sbjct: 173 ISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPT 232

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL I+PTRELA Q+ REL  +   TG  + +        ++     +   
Sbjct: 233 NK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKF 287

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDDIEFILDSSPK 178
            ++ T      ++  +      L +V     DE              +    F+  +SPK
Sbjct: 288 DILVTTPNRLIYLLKQEPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPK 347

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            RR +  +            N          A  +   +       + + + +  A+  +
Sbjct: 348 VRRAMFSATFAYDVEQWCKLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMREL 407

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++       +VF  +          L      V  +  E +QQ+R N +   R G+  V 
Sbjct: 408 VKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVL 467

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RR 355
           I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V    ++ +   R 
Sbjct: 468 ICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRS 527

Query: 356 AERLFREANVSVVW 369
              + ++A   V  
Sbjct: 528 VANVIQQAGCPVPE 541


>gi|32565321|ref|NP_498260.2| DEAD boX helicase homolog family member (ddx-23) [Caenorhabditis
           elegans]
 gi|14550364|gb|AAK67224.1|U13070_15 Hypothetical protein F01F1.7 [Caenorhabditis elegans]
          Length = 730

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 28/374 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
            P  + +A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    ++L 
Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ +L+  P      
Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-------------------------QHSD 218
                 +        + ++   +  + +                                
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V    +   +V +L        I+F + +      +K L +  F+   L G  
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q +R  ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667

Query: 339 GRKGMSVFVIPQNM 352
           G+ G ++  +  + 
Sbjct: 668 GKHGKAITFLTPDD 681


>gi|229048004|ref|ZP_04193580.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
 gi|228723461|gb|EEL74830.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH676]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEVLDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|254389955|ref|ZP_05005177.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197703664|gb|EDY49476.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 501

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 126/427 (29%), Positives = 208/427 (48%), Gaps = 14/427 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 79  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 138

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 139 RL---AQGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 195

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 196 LERGVDILVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQVPGGG 255

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I+TL K Y  + V   + S     + + +  ++V    +D A V    
Sbjct: 256 QRMLFSATMENEISTLVKRYLTNPVSHEVDSAQGNVTTMTHHVLVV--KPKDKAPVTAAI 313

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +A
Sbjct: 314 AARKGRTIIFVRTQLGADRIAEQLREAGVKADALHGGMTQGARTRTLADFKDGYVNALVA 373

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL 
Sbjct: 374 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGTVVSLSLPHQRRQIFRLM 433

Query: 361 REANVSVVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +A V              P V  I    +   +Q     ++ +  E+++ D+       
Sbjct: 434 EDAGVEASRHIVGGAGAFDPEVAEITGARSLTEVQADSANNAAKQAEREVADLTRQLERI 493

Query: 414 EKIAAGF 420
           ++ AA  
Sbjct: 494 QRRAAEL 500


>gi|238023679|ref|YP_002907911.1| ATP-dependent RNA helicase DbpA [Burkholderia glumae BGR1]
 gi|237878344|gb|ACR30676.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
          Length = 465

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/358 (35%), Positives = 190/358 (53%), Gaps = 8/358 (2%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           GY+ +T +Q A L   L  +D++  A+TGSGKT AF LAL + L       +      A+
Sbjct: 27  GYLEMTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLD------ARRFEVQAM 80

Query: 79  AIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
            + PTRELA QV +E+  L   +  V V    GG  +  +   L++GAHIVVGTPGR+ D
Sbjct: 81  ILCPTRELADQVAQEIRRLARAEENVKVLTLCGGTPMRPQTASLEHGAHIVVGTPGRIMD 140

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
           H+    L +  L  +VLDEAD MLD+GF DDI  ++   P +R  ++FSAT    IT L+
Sbjct: 141 HLERGSLALGALNTLVLDEADRMLDMGFFDDIATVVRQCPTERLTMLFSATYPEGITKLS 200

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           + +     +     E      I  R   V    R +A+  +L ++   + I FC+T+   
Sbjct: 201 RQF-LRNPKEIRLEETHDAGKIRQRFYEVTEDQRLHAVGLLLNHYRPASTIAFCNTKQQC 259

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI
Sbjct: 260 RDLLDVLTAQGFHALALHGELEQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVI 319

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           + +++ +PE  +HR GRTGRA ++G ++ +   N   R   + +     + W+P  ++
Sbjct: 320 NVDVTPDPEVHVHRIGRTGRADQEGWALSLASMNEMGRVGAIEQAQGRELEWQPLAAL 377



 Score = 50.4 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADG 517
           G            +  G K+K     ++  L   +G     IG I V    T+V V    
Sbjct: 381 GDGPLLPPMETLQILGGRKEKIRPGDVLGALTGDAGFQSTQIGKINVTEFSTYVAVERGI 440

Query: 518 V-DLLRR 523
             D LRR
Sbjct: 441 ARDALRR 447


>gi|229163230|ref|ZP_04291185.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
 gi|228620293|gb|EEK77164.1| ATP-dependent RNA helicase yqfR [Bacillus cereus R309803]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQLITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVNKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
 gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
          Length = 786

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 110/441 (24%), Positives = 187/441 (42%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 6   ELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 61

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 62  EPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 121

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ ++ VV DEAD + ++GF + +   L+  P  R+M+MFSAT+
Sbjct: 122 ATPGRFLHLCVEMDLKLTSIEYVVFDEADRLFEMGFGEQLNETLNRLPASRQMVMFSATL 181

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA-- 247
              +   A+    D V + +  E++    +  + V     DR  A+V +L+Y   + A  
Sbjct: 182 PKLLVEFARAGLSDPVLIRLDVESKLPDALALKFVYCRPEDRFTALVVLLKYVIPQQAQT 241

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L++      ++   L    R          +  V + TDVAARG
Sbjct: 242 VVFVGTQHHVELISYILSQSGISNTSVYSSLDAAARKINTAKFASKKVSVLVVTDVAARG 301

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 302 IDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 361

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + + +       AG LR     
Sbjct: 362 N------------------INDSSSIGTIPQDLLEDEYLTVTEIKKSHHIAGVLRTSENA 403

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   P +      R + 
Sbjct: 404 YKKYLSSRPTASTDANSRAKK 424


>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 463

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 126/377 (33%), Positives = 196/377 (51%), Gaps = 2/377 (0%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   I  A+ E GY   T +Q+  +   L  +DVL  AQTG+GKT  F L + 
Sbjct: 1   MSFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPML 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+A + R        AL + PTRELA QVG  +            +  GGVS+     
Sbjct: 61  HRLMANHGRGGRRQ-VRALVLTPTRELAAQVGESIIKYAHHLPFRTLIAYGGVSIKPNLE 119

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            ++ G  I+V TPGRL D +  + L ++ L+ +VLDEAD MLD+GF  DI  I+ + P++
Sbjct: 120 AIKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRMLDMGFITDIRRIMKALPEE 179

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT S  I  LA +  K    + ++  N     ++ R + V    +   + +++
Sbjct: 180 RQTLLFSATFSNEIKELADDLLKSPTLIEVSPSNSTAEQVNQRIIKVDRERKRELLSHMI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +  +  +VF  T+    R    + +     VA+ G+ SQ  R+ AL   R+G+ RV +
Sbjct: 240 GRNNWQRVLVFVRTKQIADRLAHQMEKDGLNTVAIHGDKSQGARNRALADFREGKVRVLV 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L  VI+ EL    E+ +HR GRTGRAGR G ++ ++ Q+ Q + + +
Sbjct: 300 ATDIAARGLDIDQLPHVINFELPQVAEDYIHRIGRTGRAGRGGEAISLVSQDEQDQLKAI 359

Query: 360 FREANVSVVWEPAPSVE 376
                +S+  E     E
Sbjct: 360 ESLIGLSIPSEILAGYE 376


>gi|302785159|ref|XP_002974351.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
 gi|300157949|gb|EFJ24573.1| hypothetical protein SELMODRAFT_149865 [Selaginella moellendorffii]
          Length = 523

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 160/384 (41%), Gaps = 18/384 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             I   I  A+ E GY   T +Q A +   L+++DV+  A TGSGKT AF + +   +  
Sbjct: 119 SGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSR 178

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +         P AL +APT ELA Q+  E   L     + V   + G ++  +   L 
Sbjct: 179 LPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLL 238

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL   +      +     VVLDE D M+ LGF + +   L++ P     
Sbjct: 239 QGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPSSNMK 298

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIAS-------------ENRQHSDIDYRAVLVALS 229
                                 +   +                      I  + ++V   
Sbjct: 299 PESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKRISQKVMMVDEE 358

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++   +  +L   G  + IVF +T+    + +K L +   +V  + G  +QQ+R    Q 
Sbjct: 359 EKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQTNFQD 418

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R  R    IATDV  RGID+PD+  +++ ++ S  E  +HR GRTGRAG+ G +   + 
Sbjct: 419 FRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLT 478

Query: 350 QNMQ---RRAERLFREANVSVVWE 370
            N        ++L       V  E
Sbjct: 479 LNDSEVFYDLKQLLVRTKNPVPPE 502


>gi|294886929|ref|XP_002771924.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
 gi|239875724|gb|EER03740.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Perkinsus
           marinus ATCC 50983]
          Length = 582

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 216/473 (45%), Gaps = 20/473 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++     + EAL+   +  +T +Q   +   L+ KDVL +A+TGSGKT+AF +   
Sbjct: 86  KKFTDLQICDPLKEALTTCNFTTMTDIQAKAIPLMLKGKDVLGAAKTGSGKTLAFLVPAL 145

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRE 117
             L+    RF P +    + I+PTRELA+Q+    +      K      + +GGV+   E
Sbjct: 146 ELLV--ATRFQPKNGTGVMVISPTRELAMQIYDVCKRLVDSTKLSQTYGIVMGGVNRKNE 203

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
              L  G +I+V TPGRL DH++       ++L ++V+DEAD +L +GF +D+  IL   
Sbjct: 204 ADKLSRGINIIVATPGRLLDHLQNTRGFVYANLMSLVIDEADRILQIGFEEDMNQILKIL 263

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-----YRAVLVALSDR 231
           PKKR+  +FSAT +  +  LA+   K  + V     +   +           V+V   DR
Sbjct: 264 PKKRQTSLFSATQTQKVNDLARLSLKKPIFVQSKGADDDAAISTASGLVQGYVVVGGDDR 323

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +   L+ +  K  +VF S+  SV    ++L      V+++ G+  Q  R        
Sbjct: 324 LRLLFTFLKKNQKKKVMVFFSSCNSVKFHDELLNYIDIPVISIHGQKKQSARMTNFYRFC 383

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQ 350
              + + + TDVAARG+D+P ++ ++  +   +P+  +HR GRT R A   G ++  +  
Sbjct: 384 QMESGILLCTDVAARGLDIPKVDWIVQYDPPDDPKEYIHRVGRTARGAEGTGKALLFLMP 443

Query: 351 NMQRRAERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
                  R  R++ V+ + E    P+  A  +   +++++    L     D  +      
Sbjct: 444 EELGFL-RYLRKSGVTTLNEYVFPPAKVANIQHQLEKLVETNYHLHRASRDAYRSYLHAY 502

Query: 409 AKHDPEKI----AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
           A H  +      +    ++ ++   A      ++L   +   R   +  K G 
Sbjct: 503 AAHASKDCFDVHSLDLQKLAKSFGFAVPPKVDLNLKDTKKSDRGGRKMVKSGR 555


>gi|195344854|ref|XP_002038991.1| GM17282 [Drosophila sechellia]
 gi|194134121|gb|EDW55637.1| GM17282 [Drosophila sechellia]
          Length = 822

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 189/383 (49%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  
Sbjct: 399 SGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQS 458

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 459 LPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRL 518

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 519 RLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 578

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 579 KPDTEEAEDETKLMENFYSKKKYRQTVMFTATMPPAVERLARTYLRRPATVYIGSVGKPT 638

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 639 ERTEQIVYMMGENDKRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHG 698

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 699 GKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 758

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  + ++       L
Sbjct: 759 RAGKTGCAISFVTKDDSALFYDL 781


>gi|221057271|ref|XP_002259773.1| ATP-dependent helicase [Plasmodium knowlesi strain H]
 gi|193809845|emb|CAQ40549.1| ATP-dependent helicase, putative [Plasmodium knowlesi strain H]
          Length = 722

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/566 (21%), Positives = 231/566 (40%), Gaps = 64/566 (11%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F ++P++   I + L+ +G   +T +Q     P    +D++  ++TGSGKT+AF L L  
Sbjct: 128 FADVPEINPNIAKFLASKGINQMTKIQAQSFRPIYEGRDIIGRSETGSGKTLAFALPLVE 187

Query: 61  TLLAENDRFSPA-------------------------SAPLALAIAPTRELAVQVGRELE 95
            L       S                             P  L + PTREL+ QV    +
Sbjct: 188 KLYKVKMGRSGEGVTSSTPHMEKSANAFDGRNQSDDNKNPSILVLEPTRELSKQVENTFK 247

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
            +       +    GG S   +   L+ G  I+ GTPGR+ DH+  K L++ ++K +VLD
Sbjct: 248 EISQFYNFNIMSIYGGESYVYQEAKLRKGIEILTGTPGRIIDHLEKKNLSLQNIKYLVLD 307

Query: 156 EADEMLDLGFRDDIEFI--LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           EADEML+LGF  D+E I    +  + + +L  + T S      ++  +       + S N
Sbjct: 308 EADEMLNLGFTHDLERILSYINLKEAQILLYSATTPSWVKDISSRYMKNPFFIDVVDSSN 367

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
           +   +I + A+      ++ A++              I+F  T+          +     
Sbjct: 368 KTSKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFKSLS 427

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
              L G ++Q  R + +Q  R G  ++ IATD+AARG+D+ +++LVI     +  E  +H
Sbjct: 428 FAVLHGNIAQTTREHTMQRFRQGMFQILIATDIAARGLDISNVDLVIQCFPPNYAEIYIH 487

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI-------RERDA 383
           R+GRTGRA +KG+SV +     ++   ++ +   +    E  P+ E +         +  
Sbjct: 488 RAGRTGRANKKGVSVVLFSSEDKQDLIKIEKNCGIKFSIEQLPNNEDVFTSASTMASKKI 547

Query: 384 QRILQDPLFLDSIQGDEKKMVDVLLA-KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSG 442
           + +  +P  L        ++++     + D  ++ A  L +    +   E+I   SL++G
Sbjct: 548 ENV--NPSVLPFFHKTASELIEKCTQLQMDQTELVARCLAL----ISKKEQIKKRSLING 601

Query: 443 RDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ-KAEARWLMPMLCRSSGINRQSIGA 501
                  S   K         +    + ++  S          +  +             
Sbjct: 602 LSETLTLSFINKSRKW---KNEDDIIYWVNRISNDLNVNTFNKILQI------------K 646

Query: 502 IRVQPDL-TFVEVSADGVDLLRRTVK 526
           I  +    ++ +++ +  +L  +   
Sbjct: 647 IDTKDRFSSYFDLNENIAELFIQNFN 672


>gi|114048321|ref|YP_738871.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-7]
 gi|113889763|gb|ABI43814.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
          Length = 461

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 185/379 (48%), Gaps = 7/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   +   I  A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +    S      AL + PTRELA+QV   ++       +      GG +++ +R
Sbjct: 60  LEQLSKQP---SDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      
Sbjct: 117 KGVEQGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIAT 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT S A+  L+ +   +       +EN   S ++     V    +   +  +
Sbjct: 177 EHQTMLFSATYSDAVKQLS-HKMLNQPEWVNVAENATASTVEQLVYRVDKRRKAELLSEL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF ST+       + L           G+ +Q  R+  L   + G+ RV 
Sbjct: 236 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +          
Sbjct: 296 VATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355

Query: 359 LFREANVSVVWEPAPSVEA 377
           +      ++     P  E 
Sbjct: 356 IEALIGQTLPVTVQPGYEE 374


>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
 gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 434

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 200/423 (47%), Gaps = 18/423 (4%)

Query: 2   KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
             F  +   P+++   L++  Y   T +Q   +   L   D++  A TGSGKT  F L +
Sbjct: 8   STFSELGLIPELLAR-LTDLEYTQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPI 66

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVS 113
              +  E    S AS       L + PTRELA QV   ++   A     +      GGVS
Sbjct: 67  LQKMFLEQGSKSAASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVS 126

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
           V+ + + L+ GA I+V TPGRL D I    + +  L  +VLDEAD ML LGF +++  +L
Sbjct: 127 VNTQMQALRGGADIIVATPGRLLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELL 186

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
              P K++ ++FSAT    +  L ++   D V + + S++        R   V   ++  
Sbjct: 187 ALMPAKKQTMLFSATFPEQVKLLTQDLLNDPVEIQVQSKDESTL--VQRVFSVNKGEKTT 244

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            + ++++ H  + A++F + +       + L +         G+  Q ER+  ++  + G
Sbjct: 245 VLAHLIKTHKWRQALIFVNAKKDCEHLAQKLEKRGVNAQVFHGDKGQSERTRVIEKFKAG 304

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              V IATD+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ ++     
Sbjct: 305 EIEVLIATDIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYEDL 364

Query: 354 RRAERLFREANVSVVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
              + + ++  + +  E          +V+A +    ++ +  P      +  +  + D 
Sbjct: 365 HHFKIIEKKNKLRLEREQVAGFAVNQANVDAAQALKNEKPMAKPEGTGKKKNKKADLEDD 424

Query: 407 LLA 409
           + A
Sbjct: 425 VWA 427


>gi|302783853|ref|XP_002973699.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
 gi|302787961|ref|XP_002975750.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300156751|gb|EFJ23379.1| hypothetical protein SELMODRAFT_103888 [Selaginella moellendorffii]
 gi|300158737|gb|EFJ25359.1| hypothetical protein SELMODRAFT_99603 [Selaginella moellendorffii]
          Length = 445

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 206/386 (53%), Gaps = 10/386 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAIL-NPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           I   I  AL+++  +NL  VQ++ +  P ++ +D +  A+TG+GKT+AFGL +  T+  E
Sbjct: 11  IDPEIVRALAQKNIINLFPVQQSAVYQPAMKGRDFIARAKTGTGKTLAFGLPILHTITVE 70

Query: 66  NDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
               +  +    P  + +APTRELA QV +EL          +    GGVS+  +RR L+
Sbjct: 71  RREATSRTQPGCPRCIVMAPTRELAKQVEKELTSTAPHL--TLVCIYGGVSIESQRRSLE 128

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +VVGTPGR+ D ++   L ++ +K +VLDEAD+ML  GF +D+E I++  PK+R+ 
Sbjct: 129 RPIDVVVGTPGRVIDMLQRGSLLLNRVKFMVLDEADQMLATGFAEDVEKIMERLPKQRQT 188

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI---L 239
           +MFSAT+   +  L + + +D + V++  +N +      +      SD +   +      
Sbjct: 189 MMFSATMPSWVKNLLRRFMQDPLVVDLVGDNDEKLAEGIKLYSCEASDYNKGPLLKELVN 248

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
            Y      IVF  T+   +              AL G++ Q +R   L   RDGR  V +
Sbjct: 249 SYGKGGKVIVFAKTKR-DTHNVAQAMSRSVPCEALHGDIPQFQRERTLSGFRDGRFSVLV 307

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++LVIH E+  + E  +HRSGRTGRAG+KG+++ +      R  + +
Sbjct: 308 ATDVAARGLDIPNVDLVIHYEVPGDSETFVHRSGRTGRAGKKGVAILMHTYAQGRVRDTI 367

Query: 360 FREANVSVVWEPAPSVEAIRERDAQR 385
             +          P+V+    +D  R
Sbjct: 368 EHDVGCRFEALNVPNVDMSCAQDFSR 393


>gi|315503770|ref|YP_004082657.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315410389|gb|ADU08506.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 417

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/378 (30%), Positives = 186/378 (49%), Gaps = 11/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L+ +G      +Q A +   L  +DVL   +TGSGKT+AFGL L        
Sbjct: 13  LAPALVSELAAQGISAPFPIQAATIPDSLAGRDVLGRGRTGSGKTLAFGLPLLHR---TA 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R +    PLAL + PTRELA QV   L    A  G+  A  +GG+S+ R+   L+ GA 
Sbjct: 70  GRRARPGRPLALVLVPTRELAAQVTEALAPYAATLGLRCATVVGGLSLTRQAAALRAGAE 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L+      + ++FS
Sbjct: 130 VLVATPGRLHDLIDRGDARLDQVAITVLDEADQMADMGFLPQVTKLLEQVAPGGQRMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  ++       + + +  + +   D+  A+ +         
Sbjct: 190 ATLDRGVDRLVRRFLTDPVTHSVDPGTATVTAMTHHVLHLDAEDKPAALAH--IAAREGR 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+    R  + L     +  AL G  SQ +R+  L+  R G+    +ATDVAAR
Sbjct: 248 TIVFIATKHRADRVARQLLAKGVRAAALHGGKSQPQRTRILEQFRTGQVTALVATDVAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++A+  +  ++ LHR GRT RAG  G  V ++  + +R   RL   A ++
Sbjct: 308 GIHVDGLDLVVNADPPTEAKDYLHRGGRTARAGESGTVVTLVLPDQRRDVARLMTTAGIN 367

Query: 367 VVWEPAPSVEAIRERDAQ 384
                 P    +R  D++
Sbjct: 368 ------PKTTRVRAGDSE 379


>gi|224824286|ref|ZP_03697394.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
 gi|224603705|gb|EEG09880.1| DEAD/DEAH box helicase domain protein [Lutiella nitroferrum 2002]
          Length = 417

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 137/357 (38%), Positives = 201/357 (56%), Gaps = 4/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A   +GY+  +++Q + +   L+ +DVL +AQTGSGKT AF L L    L   
Sbjct: 3   LQPSLAQAALSQGYLAPSAIQTSAIPAILQGRDVLATAQTGSGKTAAFCLPLLQQWLT-- 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
            R        AL + PTRELAVQVG  L  L       V  AV  GGVS++ +   L+ G
Sbjct: 61  SRQGSPRQVQALILLPTRELAVQVGNTLRELALSLPRRVKVAVVYGGVSINPQMMALRGG 120

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D I    L+IS +  +VLDEAD +LDLGF D++  +L   P  R+ L+
Sbjct: 121 ADIVVATPGRLLDLIGYNALSISTVGTLVLDEADRLLDLGFADELGRLLALLPPYRQNLL 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PA+ +LA+      +R++IA       DI  RA+ V  S R   + ++L+ HG 
Sbjct: 181 FSATFPPAVHSLAEQLLSQPLRIDIAQTAATAPDIHQRAIEVDASQRTMLLRHLLQTHGW 240

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R +  R T  L     +  AL G+ SQ +R   L  ++ G+ +V +ATDVA
Sbjct: 241 DRVLVFVASRQAADRVTGKLQRAGIRAAALHGDCSQGQRGQVLADLKSGQLQVLVATDVA 300

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           ARGID+P L +V++ +L  +P +  HR GRTGRAG +G ++  I  +     + + +
Sbjct: 301 ARGIDIPLLPVVVNYDLPRSPVDYTHRIGRTGRAGARGEAISFISADCAAHFQLIEK 357


>gi|195455578|ref|XP_002074783.1| GK23245 [Drosophila willistoni]
 gi|194170868|gb|EDW85769.1| GK23245 [Drosophila willistoni]
          Length = 506

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 129/440 (29%), Positives = 207/440 (47%), Gaps = 25/440 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + L++ G  + T +Q++ +   L  +D + +A+TGSGKT AF L +   L  E 
Sbjct: 14  LRPWLAKQLTKVGLKDATPIQKSCIPAILSGQDCIGAAKTGSGKTFAFALPILEKLSEEP 73

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                  +  AL + PT ELA Q+  +        GV V V  GG     E + L    H
Sbjct: 74  ------VSHFALVLTPTHELAYQISEQFLVAGQPMGVRVCVVSGGTDQMIESQKLMQRPH 127

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IVV  PGRL DH+ G    +  +LK +V+DEAD ML+  F   +  I  S PK R+ L F
Sbjct: 128 IVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRMLNGDFDASLAIIEKSLPKARQNLFF 187

Query: 186 SATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV----NILR 240
           SAT+   I   +      +    +  S+      +D R +L A  DRD  ++        
Sbjct: 188 SATMKDFIKDSSIFPIANECFEWSEESQVATVDTLDQRYLLCADYDRDMVLIEALRKYRD 247

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +   N ++F +T+      +  L     + V L G + Q+ER  A+   +    R  IA
Sbjct: 248 ENPNSNVMIFTNTKKYCQLLSMTLQNLDIENVCLHGFMRQKERVAAISRFKSNHIRTLIA 307

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV--IPQNMQRRAER 358
           TDVAARG+D+P ++LVI+  L   P+  +HR GRT RAGR GMS+ +   P++++     
Sbjct: 308 TDVAARGLDIPSVQLVINHMLPRTPKEYIHRVGRTARAGRSGMSISIFRFPRDLE-LLGS 366

Query: 359 LFREANVSVVWEPAPS--VE------AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           +  E N  +   P     VE       +  R+++  L +  F +  Q   +K    ++  
Sbjct: 367 IEDEINTKLQEHPIDQRMVERIFMQVNVTRRESEMKLDNNDFDERAQNYRRKT--WIIEG 424

Query: 411 HDPEKIAAGFLRIHRAGLCA 430
            DP+++ A + +  +  L  
Sbjct: 425 KDPDQMEALYRKKQKDKLKE 444


>gi|113971087|ref|YP_734880.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
           MR-4]
 gi|113885771|gb|ABI39823.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
          Length = 461

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 185/379 (48%), Gaps = 7/379 (1%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   +   I  A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT +F L +
Sbjct: 1   MK-FDTLGLSSPILNAIAECGYQQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPV 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +    S      AL + PTRELA+QV   ++       +      GG +++ +R
Sbjct: 60  LEQLSKQP---SDKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQR 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +      
Sbjct: 117 KGVEQGVDILVATPGRLFDIIGQFNLDLSTVTTLVIDEADRMLDLGFVRDIEKVKRLIAT 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT S A+  L+ +   +       +EN   S ++     V    +   +  +
Sbjct: 177 EHQTMLFSATYSDAVKQLS-HKMLNQPEWVNVAENATASTVEQLVYRVDKRRKAELLSEL 235

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +  +  +  +VF ST+       + L           G+ +Q  R+  L   + G+ RV 
Sbjct: 236 VGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVL 295

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +          
Sbjct: 296 VATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAE 355

Query: 359 LFREANVSVVWEPAPSVEA 377
           +      ++     P  E 
Sbjct: 356 IEALIGQTLPVTVQPGYEE 374


>gi|327403398|ref|YP_004344236.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
           taffensis DSM 16823]
 gi|327318906|gb|AEA43398.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
           16823]
          Length = 443

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 186/382 (48%), Gaps = 9/382 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   + NI + I  AL E GY   T++Q A  +  +  KDV+  AQTG+GKT+A+ L   
Sbjct: 1   MTFHDLNIKKPILTALDELGYTTPTTIQSAGFSVMMSGKDVIGLAQTGTGKTLAYLLPTL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S       +FS    P  L I PTREL VQV RE+E L     + V    GG +++ +  
Sbjct: 61  SLW-----KFSKEPHPQILIIVPTRELVVQVVREVEKLTPHMNLAVGGVYGGANINTQAS 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +  G  ++VGTPGR+ D      L + H K VV+DE DE L LGFR  +  I D  P+K
Sbjct: 116 MVLQGLDVLVGTPGRIFDLTANGSLQLKHAKKVVIDEVDETLSLGFRPQLMRIFDLLPEK 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  +      + ++ +RV  A        I   A+ V        ++  +
Sbjct: 176 RQNLLFSATLSEEVEGFLGVFFENPIRVEAARVGTPLEKIKQEAIAVPNFTSKVNLLKHM 235

Query: 240 RYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRAR 296
                     +VF S+R    +  + L       +  +    +Q  R NA+   ++G  R
Sbjct: 236 LETNQDMSRVLVFVSSRVFADKLYEELEPVFGVELGVIHSSKAQNFRFNAVNHFQNGIYR 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+ ARGID+ D+  V + ++  N EN +HR GRTGR  ++G ++  + +    + 
Sbjct: 296 VLIATDLIARGIDVTDVTHVFNFDIPDNQENYIHRIGRTGRQDKEGHAISFLTERDHEQF 355

Query: 357 ERLFREANVSVVWEPAPSVEAI 378
            ++    +  V  +  P    +
Sbjct: 356 VKIEEFMDKKVEIQAFPEEAEL 377


>gi|296230361|ref|XP_002760671.1| PREDICTED: probable ATP-dependent RNA helicase DDX59 isoform 1
           [Callithrix jacchus]
          Length = 620

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/405 (26%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 206 FEHCGFPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E         P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 266 ALFER------KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 319

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D ++   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 320 LQQHVKVIIATPGRLLDIMKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILENIPNDC 379

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    EN   +++          A   +   I+N
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEENLPCANVRQIILWVEDPAKKKKLFEILN 439

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDFEV 499

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + ++++
Sbjct: 560 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQR 592


>gi|294882024|ref|XP_002769569.1| helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239873121|gb|EER02287.1| helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 439

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 9/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F LA+   L  + 
Sbjct: 57  LKPELLRAIVDCGFEHPSEVQHEAIPQAILGTDILCQAKSGMGKTAVFVLAILQQLNVDE 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
                      L +  TRELA Q+  E +        V    V  G      +    ++ 
Sbjct: 117 KDSD----VKVLIMCHTRELAYQIKNEFDRFSKYFPNVKNGVVYGGVPISEDKEMLSKSH 172

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
             I++GTPGR+   +RGK L++SH++  VLDE D+ LD    R DI+ +   +P K++++
Sbjct: 173 PQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKLDMRKDIQSVFIETPVKKQVM 232

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYH 242
           MFSAT+S  +  + K +  +   + +  + +       +  +    + ++  + ++L   
Sbjct: 233 MFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQYFVRLAENEKNKKLTDLLDAL 292

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +         +L E  F  +A+   L Q +R +  +  +D + R+ +ATD
Sbjct: 293 EFNQVVIFVKSVQRAIALADLLTECNFPAIAIHSRLKQSDRIDRYKQFKDFKKRIMVATD 352

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +  +       ++  
Sbjct: 353 LFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKGLAITFVSSEEDTDMLNQVQA 412

Query: 362 EANVSVVWEPA 372
              V+V   PA
Sbjct: 413 RFEVTVGELPA 423


>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
 gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
          Length = 555

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 125/376 (33%), Positives = 184/376 (48%), Gaps = 10/376 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL E G     ++QE  L   L   D++  A+TG GKT  FG+ L  
Sbjct: 39  TFAELGVRDEIVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA-----VCIGGVSV 114
            + +     +     P AL I PTREL +QV ++LE                   GG   
Sbjct: 99  RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKLEVLAIYGGRPY 158

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   LQ GA +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF  DIE IL 
Sbjct: 159 ETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERILG 218

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+ ++FSAT+   I T       Q   +R   A ++  H             D+ 
Sbjct: 219 MVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDKA 278

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  +L+  G    ++F  T+ +  +    LAE  F V ++ G+L+Q  R  AL+  R 
Sbjct: 279 EMVARVLQAEGRGATMIFTRTKRTAQKVADDLAERGFSVGSVHGDLNQVAREKALKAFRT 338

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  + 
Sbjct: 339 GKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWDD 398

Query: 353 QRRAERLFREANVSVV 368
             R + + +   + + 
Sbjct: 399 IPRWQLIDKALGLGIP 414


>gi|70953337|ref|XP_745776.1| DEAD/DEAH box ATP-dependent RNA helicase [Plasmodium chabaudi
           chabaudi]
 gi|56526204|emb|CAH78677.1| DEAD/DEAH box ATP-dependent RNA helicase, putative [Plasmodium
           chabaudi chabaudi]
          Length = 579

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 198/418 (47%), Gaps = 8/418 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++     + + L E  ++ LT +Q   +   L  KD+L +A+TGSGKT+AF +   + 
Sbjct: 128 FEDLDICDALKKGLKELNFITLTEIQSKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 187

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N +F P +    L I+PTREL +Q+ +    L         + IGGVS + E++  
Sbjct: 188 LY--NIKFLPKNGTGVLIISPTRELCLQIYQVCTDLCKYIPQTNGIIIGGVSRNEEKKKF 245

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            +G +I++ TPGRL DH++     N  +L  +++DEAD +L +GF ++I  I+   PKKR
Sbjct: 246 IHGINILIATPGRLLDHMQNTKEFNYKNLVCLIIDEADRLLQIGFEEEINLIVKRLPKKR 305

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT +  + +L +   +  + + + ++      +     LV    R   +   L+
Sbjct: 306 QTALFSATQTTKVESLIRLSLQKPIFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 365

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            + +K  +VF +   SV  +  +L         + G+  Q +R  +       +  + + 
Sbjct: 366 RNPSKKIMVFFNNCMSVQFYNDLLNYIDIPTFCIHGKKKQNQRLKSFNEFSAAKNAILLC 425

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERL 359
           T+VAARG+D+P++  +I  +   + +  +HR GRT R     G ++  + ++  +    L
Sbjct: 426 TNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGNDSAGSAIIFLMKHELKFLNYL 485

Query: 360 FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            +  N+ V        + I  +   + I+     L  +  +  K        +  + +
Sbjct: 486 -KFYNIPVNQFAYDQKKLINIQSQMESIVTKNFHLHKMAREAFKSYLNGYVTYALKDV 542


>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
           NCIMB 400]
          Length = 428

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/406 (29%), Positives = 200/406 (49%), Gaps = 8/406 (1%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F    +   +   L+E  Y+  T +Q   +   L  KD+L  A TGSGKT AF L + 
Sbjct: 8   TTFAEFGLHTPLLARLTELKYLQPTPIQAETIPSTLTGKDLLAGANTGSGKTAAFALPIL 67

Query: 60  STLLAENDRFS-PASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHR 116
             L++     S   +   AL + PTRELA QV    +         + V    GGVSV+ 
Sbjct: 68  HQLVSRRAATSAKGNFVSALVLVPTRELAKQVADSFKSYAVHLNGDIKVVAAFGGVSVNT 127

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ GA +VV TPGRL D +    L +S +  +VLDEAD ML LGF +++  +L+  
Sbjct: 128 QMLALRGGADVVVATPGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLL 187

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+++ L+FSAT    +  L +    + + + + S          R + V    +   + 
Sbjct: 188 PKQKQTLLFSATFPDEVRQLTQALLVNPLEIQLQSAEASTL--VQRVMTVNREKKTALLA 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L+ H  +  ++F   + S +   + LA+         G+ +Q  RS  L+  + G  +
Sbjct: 246 HLLQQHQWRQVLIFVGAKNSCNHLAQKLAKRGITAEVFHGDKAQGARSRVLEGFKAGDIQ 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ ++  +     
Sbjct: 306 VLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALTLLSHDEYHHF 365

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
             + ++  + +  E     EA  +   + +L+ P  +   +G  KK
Sbjct: 366 SVIEKKNQIRLEREQVNGFEA-DDVVPESVLEQPKPMAKPEGSGKK 410


>gi|332293260|ref|YP_004431869.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171346|gb|AEE20601.1| DEAD/DEAH box helicase domain protein [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 446

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/419 (27%), Positives = 194/419 (46%), Gaps = 13/419 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
             I EAL      + T +Q+  +   L  +KDV+  AQTG+GKTVAFG+ L   +   N 
Sbjct: 12  DAIQEALKSLEITSPTDIQQQAIPAMLTSKKDVIALAQTGTGKTVAFGVPLLQLIDRTNP 71

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNGAH 126
                    A+ + PTREL  Q+   +  L A       AV  GGV V  +   L+  A 
Sbjct: 72  ------TTQAVILVPTRELGQQIQSNIAALAAHLPEVRTAVFYGGVPVKDQIERLKEPAQ 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D +  + +NI+    +VLDEADEM+          +      +R  L+ +
Sbjct: 126 IIVATPGRLIDLMERQAINITQANYLVLDEADEMVSSLKDSLDTIVTAMPNNRRTFLLSA 185

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
                    +     K+ + V+          I +  V+V   ++ + +++ L     + 
Sbjct: 186 TMPGAIKQIVQNYLSKNPIEVSAEMATLGSQKITHEYVVVEPIEKLDVLMHFLNSRIGQR 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+FC T+A+V++  K LA + F   A+ G LSQ  R   +   R+G   + +ATD+AAR
Sbjct: 246 GIIFCKTKAAVNKLAKNLAINKFSSGAIHGSLSQPIRDRMMGQFREGHIDILVATDLAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ ++E V++  L    +  +HRSGRT RAG  G ++ ++ +   +       E  +S
Sbjct: 306 GIDVKEIEYVVNYHLPEFYDMYVHRSGRTARAGATGYALTILQEEEVKEIPEFEHELGIS 365

Query: 367 VVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                  S + I + +    A++I +     + I  + K+ V  +      E++    +
Sbjct: 366 FSAFAKASPQQIEDNNTVLWAKKIFKTKPNRE-IATELKESVHAVFHHLTKEELIDKLM 423


>gi|332760197|gb|EGJ90493.1| ATP-independent RNA helicase dbpA [Shigella flexneri K-671]
          Length = 435

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 188/368 (51%), Gaps = 10/368 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY+ +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      A
Sbjct: 1   MGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQA 54

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLC 136
           L + PTRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL 
Sbjct: 55  LVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLL 114

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH++   +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  +
Sbjct: 115 DHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAI 174

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +   Q+D + + I S +             +   +   +  +L  H   + +VFC+T+  
Sbjct: 175 SGRVQRDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKD 233

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                  L E      ALS     ++R   L    +G ARV +ATDVAARG+D+  LELV
Sbjct: 234 CQAVCDALNEVEQ--SALSLHGDLEQRDQTLVRFANGSARVLVATDVAARGLDIKSLELV 291

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           ++ EL+ +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  
Sbjct: 292 VNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANS 351

Query: 377 AIRERDAQ 384
           +I   +A+
Sbjct: 352 SIVTLEAE 359



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 298 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 357

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 358 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 417

Query: 524 TVKLDK 529
            ++  K
Sbjct: 418 QLQGGK 423


>gi|256391892|ref|YP_003113456.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256358118|gb|ACU71615.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 502

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/379 (32%), Positives = 196/379 (51%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + + L+  G      +Q + L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 70  DLPGALLQTLAREGLTEPFPIQASTLPNSLAGRDVLGRGRTGSGKTIAFGLALLAR---T 126

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 127 AGRRAEPREPLALVLVPTRELAQQVTDALTPYAHAVRLRLATVVGGISIGRQAHALRSGA 186

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + ++F
Sbjct: 187 EIVVATPGRLKDLIERGDCRLDQVAITVLDEADQMADMGFLPQVTELLDQVAPGGQTMLF 246

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + +  D V  ++       + +++  + +  SD++ A+ +I    G  
Sbjct: 247 SATLDRNVDRLVRRFLTDPVTHSVDPSAASVTTMEHHLLHIEGSDKNAAVAHIASREGG- 305

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  TR    R  + L  +  +  AL G  SQ +R+  L+  R G+    IAT+VAA
Sbjct: 306 -VIMFTDTRHGADRLVRDLLANGVRAAALHGGKSQPQRTRTLEQFRGGQVTALIATNVAA 364

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+   A +
Sbjct: 365 RGIHIEGLDLVVNVDPPADHKDYLHRGGRTARAGESGTVVTLVLPNQRRDMTRMMAAAGI 424

Query: 366 SVVWEPAPSVEAIRERDAQ 384
           +      P+   +R  DA+
Sbjct: 425 T------PNSARVRPGDAE 437


>gi|227529699|ref|ZP_03959748.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
 gi|227350365|gb|EEJ40656.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
          Length = 469

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 191/461 (41%), Gaps = 15/461 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+   + +A+ E  +   T VQE ++   L+   V+  + TGSGKT AF L + 
Sbjct: 16  KTFADFNLQPYLLDAIKEINFHQPTPVQEKVIPLILKGDSVVGQSATGSGKTHAFLLPIF 75

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVHR 116
           + L              A+   P+RELA Q+    + L         +     G    H+
Sbjct: 76  AQLDPAKQEV------QAVITTPSRELAYQIYAAAKQLNKHLPTPVTIHNYVGGTDKQHQ 129

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L+I      V+DEAD  LD+GF D ++ I    
Sbjct: 130 IEQLKRQQPQLVIGTPGRVLDLIKSQALDIHTATKFVVDEADMTLDMGFLDQVDQIASHF 189

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +M++FSATI   +    K Y ++ V   I +E   + D+    +     D++  I 
Sbjct: 190 PDDLQMMVFSATIPQKLRPFLKKYMENPVMEEIPTETVINPDVKNWLMSTKGRDKNQLIY 249

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+         L E   +V  + G L  + R   ++ +RD   +
Sbjct: 250 QLLTMGEPYLALVFANTKERAIELATYLGEQGLKVALIHGGLEARRRKRTMRQIRDLDFQ 309

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ ++ S+ E  +HR GRTGR G  G ++ +   +     
Sbjct: 310 YVVATDLAARGIDIDGVSLVINDDIPSDLEYFIHRVGRTGRNGMPGTAITLYAPSEDGLI 369

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR---ILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +L  E  +  V +       +   D  R     +    LD       K     +     
Sbjct: 370 AKLE-ERGIKFVPKEIRHGRIVTTHDRNRRQNYSRRQAKLDPSMKGFVKKTKKKVKPGYK 428

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
           ++I        +                 R R     R  +
Sbjct: 429 KRIKRAIREDEQQKRKQELRHKIRKAKRARQRQHRRERNSR 469


>gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 447

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 190/363 (52%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  AL E GY + T +Q   +   L+ +D+  +AQTG+GKT  F L +   L    
Sbjct: 12  LADPLLRALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFTLPILQLLSHRP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P  L + PTRELA QV   +E       +   V  GGV+++ + R L+    
Sbjct: 72  ALKSGPGRPRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQIRALRGQVD 131

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH   K +++S ++ +VLDEAD MLD+GF  DI  I+   P +R+ L+FS
Sbjct: 132 IIVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKLLPARRQNLLFS 191

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +  LA     +   V +A+ N     +  +  LV    + + + ++++ +  + 
Sbjct: 192 ATFSDEMRALADGILTNPASVEVAARNTTAERVQQQVHLVESHAKRDLLSHLIKQNQWQQ 251

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+   +R  + L++      A+ G  SQ  R+ AL   ++GR  V +ATD+AAR
Sbjct: 252 VLVFTRTKHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNGRIPVLVATDIAAR 311

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAG  G ++ ++ +   R    + R     
Sbjct: 312 GLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAAGAALSLVDREEMRLLTSIERLIRRP 371

Query: 367 VVW 369
           +  
Sbjct: 372 IER 374


>gi|21224259|ref|NP_630038.1| DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|256784656|ref|ZP_05523087.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289768540|ref|ZP_06527918.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|2815333|emb|CAA16457.1| probable DEAD-box RNA helicase [Streptomyces coelicolor A3(2)]
 gi|289698739|gb|EFD66168.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 498

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/378 (32%), Positives = 193/378 (51%), Gaps = 8/378 (2%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  AL ++G      +Q A L   L  +D++   +TGSGKT+AFGLAL + 
Sbjct: 71  FADLDMPGELLAALGQQGVTVPFPIQAATLPNSLAGRDIMGRGRTGSGKTLAFGLALLAR 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +    PL L + PTRELA QV   L        + +A  +GG+S+ R+   L
Sbjct: 131 ---TAGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASAL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 188 RGGAEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQ 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 248 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTEIA 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 306 ARDGRVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRLMS 425

Query: 362 EANV-SVVWEPAPSVEAI 378
           EA +     + +P  EA+
Sbjct: 426 EAGIRPQTTQVSPGDEAL 443


>gi|15839285|ref|NP_299973.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa 9a5c]
 gi|9107937|gb|AAF85493.1|AE004075_8 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
          Length = 544

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 16  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSR 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ G
Sbjct: 76  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 136 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E    + +  R    A  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 SEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 316 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVV 368
                + 
Sbjct: 376 YIEQKIP 382


>gi|320009565|gb|ADW04415.1| DEAD/DEAH box helicase domain protein [Streptomyces flavogriseus
           ATCC 33331]
          Length = 726

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/449 (28%), Positives = 212/449 (47%), Gaps = 10/449 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 48  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 107

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 108 AL---AGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 164

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 165 LERGVDVLVATPGRLRDIINRGACSLENVQVAVLDEADQMSDLGFLPEVTELLDQIPGGG 224

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL K Y  + V   + S     S + +  ++V    +D A V    
Sbjct: 225 QRMLFSATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVV--KPKDKAPVTAAI 282

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +A
Sbjct: 283 AARKGRTIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVA 342

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAGR G+ V +   + +R+  RL 
Sbjct: 343 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLALPHQRRQIFRLM 402

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A V                 A+  +     L  +Q D         A+ +   +    
Sbjct: 403 EDAGVDASRHIVQGAGVFEPEVAE--ITGARSLTEVQADSANNAAKQ-AEREAADLTKQL 459

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
            R+ R  +   EE   +   + R+R  D 
Sbjct: 460 ERVQRRAVELREEADRLVARAARERGDDP 488


>gi|170582010|ref|XP_001895938.1| ATP-dependent RNA helicase DDX18 [Brugia malayi]
 gi|158596969|gb|EDP35219.1| ATP-dependent RNA helicase DDX18, putative [Brugia malayi]
          Length = 547

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 102/431 (23%), Positives = 193/431 (44%), Gaps = 19/431 (4%)

Query: 2   KIFENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++ E    A++E G+  +T +Q   + P L+ +DV+ SA+TGSGKT+AF + 
Sbjct: 63  TTFASLENILSESTLLAITEMGFTKMTEIQAKCIEPLLQGRDVIASAKTGSGKTLAFLIP 122

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR- 116
               L+     +   +    + I+PTREL++Q    L  + AK   +    I G +  + 
Sbjct: 123 AVELLI--KLEWKARNGTGVIVISPTRELSMQTYGVLSEILAKHPTLTHGLIMGGANRQA 180

Query: 117 -ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             ++  +  + +V      L       G  + +LK +++DEAD +LD+GF  +++ IL  
Sbjct: 181 EAQKLARGVSFLVATPGRLLDHLQNTDGFMVKNLKCLIIDEADRILDIGFEIEMQQILRV 240

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--------DYRAVLVA 227
            PKKR+ + FSAT +P +  L K            ++    +              V+  
Sbjct: 241 LPKKRQTMFFSATQTPKVDELVKAALHTDPVKVGINKINPKNGSELATVSGLQQGYVVCP 300

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              R   +   L+ +  K  +VF S+  SV    ++L      V  + G+  QQ+R+   
Sbjct: 301 SEKRFLLLFTFLKKNRDKKVMVFFSSCNSVKYHHELLNYIDISVQCIHGKQKQQKRTCTF 360

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVF 346
                 ++ + + TDVAARG+D+P ++ ++  +    P   +HR GRT R     G ++ 
Sbjct: 361 FSFCQAKSGILLCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTARGVTGTGHALL 420

Query: 347 VIPQNMQRRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++         R  + A V +  +E + S  A  +   +++++   +L+    +  K   
Sbjct: 421 ILRPEELGFL-RYLKHAKVLLNEYEFSWSKIANIQMQLEKLIEHNYYLNKSAKEAYKCYI 479

Query: 406 VLLAKHDPEKI 416
                H  + I
Sbjct: 480 RAYDSHSLKNI 490


>gi|254249351|ref|ZP_04942671.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
 gi|124875852|gb|EAY65842.1| Superfamily II DNA and RNA helicase [Burkholderia cenocepacia
           PC184]
          Length = 436

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 131/384 (34%), Positives = 198/384 (51%), Gaps = 12/384 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q A L   L  +D++  A+TGSGKT AF LAL + L       + +    A+ + P
Sbjct: 1   MTPIQAASLPVALAGQDLIAQAKTGSGKTAAFSLALLARLD------ARSFDVQAMILCP 54

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L   +  V V    GG  +  + + L++GAHIVVGTPGR+ DH+  
Sbjct: 55  TRELADQVAQEVRRLARAEENVKVLTLCGGTPMRPQAQSLEHGAHIVVGTPGRIMDHLDR 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L +  L  +VLDEAD MLD+GF DDI  +    P  R+ L+FSAT    I  L++ + 
Sbjct: 115 GNLKLDALNTLVLDEADRMLDMGFFDDIAKVARMCPTTRQTLLFSATYPDGIAKLSQQF- 173

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
               +    +E    S I  R   V   +R +A+  +L ++   + I FC+T+       
Sbjct: 174 LRNPKEIKLAERHDDSKIRQRFYEVTEDERLHAVGQLLNHYRPVSTIAFCNTKQQCRDLL 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL    F  +AL GEL Q+ER   L    +    V +ATDVAARG+D+  LE VI+ ++
Sbjct: 234 DVLHAQGFHALALHGELDQRERDQVLIQFANRSCSVLVATDVAARGLDIAQLEAVINVDV 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRTGRA + G ++ ++  +   R   + +     V W P   ++   + 
Sbjct: 294 TPDPEVHVHRIGRTGRADQDGWALSLVSMDEMGRVGAIEQAQKREVEWHPLAELKPADD- 352

Query: 382 DAQRILQDPLFLDSIQGDEKKMVD 405
               +L  P+    I G  K  + 
Sbjct: 353 ---SVLLPPMETLQILGGRKDKIR 373



 Score = 58.1 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVD 519
                  +  G K K     ++  L   +G + + IG I V    T+V     V+ D + 
Sbjct: 357 PPMETLQILGGRKDKIRPGDVLGALTGDAGFDGKQIGKINVTEFSTYVAIERGVARDALR 416

Query: 520 LLRRTVKLDKGIQLKYLGGE 539
            L       K ++++ +  E
Sbjct: 417 KLNAGKIKGKRVKVRLMDEE 436


>gi|115532548|ref|NP_001040789.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|82654504|gb|ABB88208.1| Hypothetical protein H20J04.4b [Caenorhabditis elegans]
          Length = 561

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 99/466 (21%), Positives = 187/466 (40%), Gaps = 26/466 (5%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     I + L        T VQ A +   L   D+L  A+TG+GKT+AF + + 
Sbjct: 89  KKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   L     +  +V +GG S+  + R
Sbjct: 149 QKLSVDP------YGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQAR 202

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L    H+VV TPGRL D I      I+ +   +     +  D          L    + 
Sbjct: 203 ELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFES 262

Query: 180 RRMLMFS------ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 +       T +  +       +          +      ++ + V+  ++ +D 
Sbjct: 263 ISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDA 322

Query: 234 AIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V +++ +  KN     ++F  T         +     F+V +L  ++ Q++R  AL  
Sbjct: 323 YLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSA 382

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R    +V I TDVA+RG+D+P ++LV++  +   P+  +HR GR+ RAGR G ++  + 
Sbjct: 383 FRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVT 442

Query: 350 QNMQRRAERLFREANVSVVWEPAP--------SVEAIRERDAQRILQDPLFLDSIQGDEK 401
           Q      + + +     +              +   + +++A+  L++  F +  + + +
Sbjct: 443 QYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQKFGEKKEINRR 502

Query: 402 KMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
           K + +     D        +R  R      +       +  RDRF+
Sbjct: 503 KELLMSGMDEDEADRHLEEMRTRRMTNSKRKLEKISGQLDKRDRFQ 548


>gi|58259251|ref|XP_567038.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57223175|gb|AAW41219.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 430

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 170/372 (45%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    +   +
Sbjct: 54  LKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVD 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          V            +      + +
Sbjct: 114 GEVS------IIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKE 167

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVVGTPGR    +R K LN S +K  VLDE D+ML+    R D++ I  ++P  ++
Sbjct: 168 KCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQ 227

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I    K + +  + + +  E +       +  L      ++  + ++L 
Sbjct: 228 VMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLD 287

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                   +F  +    ++   +L E  F  + +   L Q ER +  Q  +    R+ +A
Sbjct: 288 NLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVA 347

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TD+  RGID+  + +VI+ +  S+ ++ LHR GR GR G KG+++  +  +  Q   +R+
Sbjct: 348 TDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRI 407

Query: 360 FREANVSVVWEP 371
                V++   P
Sbjct: 408 QERFTVAIPTLP 419


>gi|58259249|ref|XP_567037.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134107387|ref|XP_777578.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74687372|sp|Q5KNA3|SUB2_CRYNE RecName: Full=ATP-dependent RNA helicase SUB2
 gi|50260272|gb|EAL22931.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223174|gb|AAW41218.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 442

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 170/372 (45%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    +   +
Sbjct: 66  LKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVD 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          V            +      + +
Sbjct: 126 GEVS------IIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKE 179

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVVGTPGR    +R K LN S +K  VLDE D+ML+    R D++ I  ++P  ++
Sbjct: 180 KCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQ 239

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I    K + +  + + +  E +       +  L      ++  + ++L 
Sbjct: 240 VMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLD 299

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                   +F  +    ++   +L E  F  + +   L Q ER +  Q  +    R+ +A
Sbjct: 300 NLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVA 359

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TD+  RGID+  + +VI+ +  S+ ++ LHR GR GR G KG+++  +  +  Q   +R+
Sbjct: 360 TDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRI 419

Query: 360 FREANVSVVWEP 371
                V++   P
Sbjct: 420 QERFTVAIPTLP 431


>gi|148700137|gb|EDL32084.1| mCG141508, isoform CRA_c [Mus musculus]
          Length = 689

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/391 (28%), Positives = 181/391 (46%), Gaps = 15/391 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  I +   + L  RG   L  +Q     P    KD++  A+TG+GKT +F + L   
Sbjct: 136 FSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIER 195

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +    + +P  L +APTRELA QV ++ + +  K    VA   GG S   +   +
Sbjct: 196 LQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITRKLS--VACFYGGTSYQSQINQI 253

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH++   L++S L+ VVLDE D+MLDLGF + +E I+  S K   
Sbjct: 254 RNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDS 313

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A               +   +      +                 +    
Sbjct: 314 EDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPA 373

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AI+FC T+ +V+               L G+++Q +R   L+  R
Sbjct: 374 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQ-CLHGDIAQSQREITLKGFR 432

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ V      
Sbjct: 433 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPR 492

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERD 382
            + +   + ++A ++      PS   + +  
Sbjct: 493 ERGQLRYVEQKAGITFKRVGVPSTMDLVKSK 523


>gi|32363421|sp|Q9PA24|RHLB_XYLFA RecName: Full=ATP-dependent RNA helicase rhlB
          Length = 543

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 15  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSR 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ G
Sbjct: 75  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 135 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E    + +  R    A  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEYMNEPEKLVAETETVTTTRVRQRIYFPAEEEKIPLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 255 SEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 315 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVV 368
                + 
Sbjct: 375 YIEQKIP 381


>gi|15242854|ref|NP_201168.1| DEAD box RNA helicase, putative [Arabidopsis thaliana]
 gi|10177044|dbj|BAB10456.1| RNA helicase [Arabidopsis thaliana]
          Length = 522

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 178/400 (44%), Gaps = 19/400 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P   +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 56  FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115

Query: 62  LLAENDRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++           P  LAL I PTRELA Q   E   L      +    V  G      +
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 175

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +R   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 176 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + PK+R+  +FSAT+   +  +     +                      +  ++  D  
Sbjct: 236 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 295

Query: 235 I-------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
                      +  +     IVFC+T         +L E    V  +     Q  R+   
Sbjct: 296 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 355

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + +
Sbjct: 356 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 415

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +    +     L    ++ +   P PS++    +  Q+ L
Sbjct: 416 LAPWEEYFLSSL---KDLPITKSPLPSIDPETVKKVQKAL 452


>gi|59712046|ref|YP_204822.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri ES114]
 gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
          Length = 421

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 190/383 (49%), Gaps = 8/383 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST---LLAEN 66
            +   L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L L      L +  
Sbjct: 18  PLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQQIAELQSGK 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV   ++         +      GGVSV+ +   L+ G
Sbjct: 78  AQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK+++ L+
Sbjct: 138 ADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL +    + V + + S +        R   V   ++ + + ++++ +  
Sbjct: 198 FSATFPEEVQTLTQALLNNPVEIQLQSADASTV--VQRVFTVNKGEKTSVLAHLIQKNQW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + + +     LA+         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 256 RQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I        + + ++  
Sbjct: 316 ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYHHFKIIEKKNK 375

Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387
           + +  E     E + E   + +L
Sbjct: 376 IRLEREQVEGFE-VNEEITEALL 397


>gi|330873852|gb|EGH08001.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963764|gb|EGH64024.1| ATP-dependent RNA helicase DbpA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 459

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P    +   L   GY  +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 6   FNSLPLSAAMLANLESLGYAEMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +   N RF       AL + PTRELA QV +E+  L   +  + V    GGVS   +   
Sbjct: 66  I---NPRF---FGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVSFGPQIGS 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAHI+VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D I  I++ +P++R
Sbjct: 120 LEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDSIADIIEQTPQRR 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT    I  L+  + +D   V         S I+     ++   R  A+V +L 
Sbjct: 180 QTLLFSATYPVGIKQLSSKFMRDPQTV-KVEALHADSQIEQIFYEISPEQRLEAVVKVLG 238

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 239 HFRPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 298

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++V++ EL+ + E  +HR GRTGRAG  G++V ++  +  +RA  + 
Sbjct: 299 TDVAARGLDIDALDMVLNVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIE 358

Query: 361 REANVSVVWE 370
                 + W+
Sbjct: 359 ELQKAPLNWQ 368



 Score = 58.1 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEV----SADGVD 519
              +   +  G K K     ++  L   +GI    +G I +     +V V    +   ++
Sbjct: 383 PAMTTLCIGSGRKDKLRPGDILGALTGEAGIAGTQVGKIAIFDFQAYVAVERSMAKQALE 442

Query: 520 LLRRTVKLDKGIQLKYL 536
            L       K ++++ L
Sbjct: 443 RLNNGKIKGKSLRVRIL 459


>gi|268554368|ref|XP_002635171.1| Hypothetical protein CBG11408 [Caenorhabditis briggsae]
          Length = 565

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 176/376 (46%), Gaps = 15/376 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L  + +   T +Q       +  +D++  A+TGSGKT+AF L     +  + 
Sbjct: 137 LPGQVHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQP 195

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P  L + PTRELA QV           G+ +    GG S   + RDL+ G  
Sbjct: 196 HR-QRGEGPSVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 254

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I V TPGRL D +     N+     +VLDEAD MLD+GF   I  I+      R+ LMFS
Sbjct: 255 IAVATPGRLLDFLDNGTTNMKRCSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMFS 314

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRDNAIVNILRYH 242
           AT    + +LA ++QKDA  +N+ S     +    +        A   +   ++N +   
Sbjct: 315 ATWPKEVRSLASDFQKDAAFLNVGSLELAANHNITQVVDVLEEHAKQAKLMELLNHIMNQ 374

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+ +Q ER   LQ  + G+  + +ATD
Sbjct: 375 KECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKMPILLATD 434

Query: 303 VAARGIDL------PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           VAARG++        D++ VI+ +  +N E+ +HR GRTGR  +KG +          +A
Sbjct: 435 VAARGLEFWVQVHVDDIKFVINYDYPNNSEDYVHRIGRTGRRDKKGTAYTFFTHTNASKA 494

Query: 357 ERLFR---EANVSVVW 369
           + L +   EA  +V  
Sbjct: 495 KDLLKVLDEAKQNVPQ 510


>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274 [Cryptosporidium hominis]
          Length = 868

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 199/403 (49%), Gaps = 13/403 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++      + E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +  
Sbjct: 5   TFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIE 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   + +         + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   
Sbjct: 65  RLGCSHSQI---VGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFES 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     IVV TPGRL  HI   GL++  +K ++LDEAD + ++G    IE IL+S PK R
Sbjct: 122 LSGNPDIVVATPGRLFHHIIEAGLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++ SAT+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR
Sbjct: 182 QCVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLR 241

Query: 241 YHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                +  AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  
Sbjct: 242 NTIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRAL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+AARG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G +  +I          
Sbjct: 302 VVTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTID 361

Query: 359 L-----FREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDS 395
           L      +   ++       S +++  E+  +  ++D    + 
Sbjct: 362 LCLFLGLKMTTLTSKQTTDSSNDSLNTEKRVEASIRDDDIHEE 404


>gi|260584215|ref|ZP_05851963.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
 gi|260158841|gb|EEW93909.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Granulicatella
           elegans ATCC 700633]
          Length = 443

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 177/389 (45%), Gaps = 11/389 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK  +  +   + +AL +  +   T +QE I+   L+ + V+  +QTGSGK+ +F L L 
Sbjct: 1   MKFTDYQLQPFLQQALEKLSFSTPTKIQEKIIPLLLKGESVIGQSQTGSGKSHSFLLPLI 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
             +  +            +   P+RE     V+V  +L        ++     G   + +
Sbjct: 61  HKIDPDKQE------LQLVITVPSRELAEQLVRVTSQLIEEAPTPILLEKCVGGTDKLRQ 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            ++  Q   HIV+GTPGR+ D +R   L I     +V+DEAD   DLGF + ++ I    
Sbjct: 115 VQKLQQTAPHIVIGTPGRIFDLMRENALLIQTATMMVVDEADMTFDLGFLETVDEIASRM 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  +M +FSATI   I    K Y  +   +++ ++      I  + ++    +    + 
Sbjct: 175 PKDLQMSVFSATIPDKIKPFLKKYLGNPKIIHVENKQLVSPTITNQLLVTKTKNPLEVLF 234

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++        ++F +T+      T  L E   +V  + G++  +ER   ++ ++    +
Sbjct: 235 ELITLGHPYLMLIFVNTKQKADEVTAFLREKSLKVATIHGDIPARERRRVMKQIQQMEYQ 294

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  +  VI+ E+ S  E  +HR GRTGR G  G ++     N ++  
Sbjct: 295 YVVATDLAARGIDIEGVSHVINLEIPSELEFFIHRVGRTGRNGLAGQAITFYTPNQEQAI 354

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           + L     +S       + E +   D  R
Sbjct: 355 QTLE-AKGISFETMELKNGELVESYDRSR 382


>gi|307201507|gb|EFN81270.1| Probable ATP-dependent RNA helicase DDX23 [Harpegnathos saltator]
          Length = 679

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF + L   +  
Sbjct: 256 SGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITS 315

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 316 LPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRL 375

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 376 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 435

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 436 KPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPT 495

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       + L +  +    L G
Sbjct: 496 ERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHG 555

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 556 GKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 615

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RAG+ G+++    ++       LF +   +++  P 
Sbjct: 616 RAGKAGLAISFCTKDDSH----LFYDLKQTILASPI 647


>gi|293374539|ref|ZP_06620860.1| ATP-dependent RNA helicase DbpA family protein [Turicibacter
           sanguinis PC909]
 gi|325838631|ref|ZP_08166592.1| DEAD-box ATP-dependent RNA helicase CshB [Turicibacter sp. HGF1]
 gi|292646829|gb|EFF64818.1| ATP-dependent RNA helicase DbpA family protein [Turicibacter
           sanguinis PC909]
 gi|325490779|gb|EGC93084.1| DEAD-box ATP-dependent RNA helicase CshB [Turicibacter sp. HGF1]
          Length = 433

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/347 (29%), Positives = 169/347 (48%), Gaps = 9/347 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   +  A+ +  +  LT +QE ++   L  KD++  +QTGSGKT AF + +  +L  +
Sbjct: 9   NIKPYLKAAIEDLHFEELTQIQEQVIPLALEGKDIIGQSQTGSGKTHAFLIPIFESLKED 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQN 123
                      A+   PTRELA Q+      L +   T + +   +GG    +    L  
Sbjct: 69  ------VQQVQAVITTPTRELAEQIYIVASHLASFSETPIKIGRYVGGTDKKQTIERLGV 122

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHL-KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              IV+GTPGR+ D    +   + H  K  V+DEAD  L+ GF  DI+ I  +  K  +M
Sbjct: 123 QPQIVIGTPGRIKDLAINERALLVHTAKMFVVDEADMTLETGFLTDIDQIAGTMGKDLQM 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSATI  A+    K Y      ++I    +    I++         R N + N+L+  
Sbjct: 183 MVFSATIPQALKPFLKKYMTVPTHIHIQPRQQTAVKINHILYPTKHRSRVNIVANLLKTI 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               AI+F +T+   +  +  L     QV  + G+L+ ++R   +Q +R+   +  +ATD
Sbjct: 243 NPYLAIIFVNTKQHATEVSNALTSQGLQVGQIHGDLTPRQRRQMMQRIRNLDFQYIVATD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +AARGID+  +  VI+ EL  + E  +HR GRT R    G+++ +  
Sbjct: 303 IAARGIDIEGVSHVINYELPQDLEFYIHRVGRTARGNYDGVAITLYD 349


>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
 gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
          Length = 814

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 213/465 (45%), Gaps = 26/465 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q+  +   L  KDV+  A TGSGKT AF + +  
Sbjct: 300 SFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 359

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 360 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 416

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF +++  IL + PK 
Sbjct: 417 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 476

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      VR+ + S+ +    +              R   ++
Sbjct: 477 RQTMLFSATMTNSVDKLIRVGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 536

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       IVF   +    R   +      +   L G +SQ++R  +++  RD +  
Sbjct: 537 FLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 596

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 597 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK-- 654

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
                     VV E   +  A   +   R+++  +   + + +     ++ +VL  + + 
Sbjct: 655 ----------VVKEAVKAGRAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEE 704

Query: 414 EKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +++A   +++ R    +   EEI      +  +  +D   + K G
Sbjct: 705 KQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKDKRESKKRG 749


>gi|221068762|ref|ZP_03544867.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220713785|gb|EED69153.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 707

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 123/418 (29%), Positives = 187/418 (44%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T VQ+  +   + E        D++VS+QTGSGKT AF L + 
Sbjct: 63  LAPELVQAVADLGYTQPTQVQQKAIPLAMGEAADASGFIDLMVSSQTGSGKTAAFLLPVL 122

Query: 60  STLLAE-----------------------------NDRFSPASA-------PLALAIAPT 83
            TL+ +                             N R  P ++       P AL + PT
Sbjct: 123 HTLIEQRAQADADAKAEFERLCAEATAKGEPVPKRNKRKDPTNSRNFKAAVPGALVLCPT 182

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 183 RELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQRSMQ 242

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P +  LA     D
Sbjct: 243 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNVMTAQRKQTMMFSATFAPRVQQLAMRVMHD 302

Query: 204 A-----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                        + +  S             +   + + LR      AIVF ST+    
Sbjct: 303 NGSGVKKVTVDTPQEKHASIKQVLFWADNAQHKRKMLDHWLRDSSINQAIVFASTQVECD 362

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 363 GLATDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 422

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR+G +V       +RR   +          E  P +E
Sbjct: 423 YGLPMKAEDYTHRIGRTGRAGREGTAVTFAEFRDRRRVFDIEGYTRQQFKAETIPGME 480


>gi|301065837|ref|YP_003787860.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
 gi|300438244|gb|ADK18010.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
           Zhang]
          Length = 448

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 197/451 (43%), Gaps = 14/451 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   + + L+       T +Q+ ++   LR ++++  +QTGSGKT AF + L S
Sbjct: 5   FKQFQ-LKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLS 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            +    D      A   +  AP+RELA Q+    +          +  +  G     +  
Sbjct: 64  MVDPTED------ATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQID 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +   +  H+ +GTPGR+ D I+   L  S ++  V+DEAD  LD+GF + ++ I  S P 
Sbjct: 118 KLQNHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +M +FSATI   +    + Y  +   + +  ++     ++   +     D++  I  +
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIASKGRDKNELIYQL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  
Sbjct: 238 VTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYV 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  + +VI+AE+  + E  +HR GRTGR G  G +V +     + +   
Sbjct: 298 VATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAE 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L     +    +   + E +    R R   R  +      +I+G  KK     +  +  +
Sbjct: 358 LE-HMGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
              A  L   R    A  +         R R
Sbjct: 417 IRTAVLLERKRNTKIARRQALLAEKRKNRKR 447


>gi|50545487|ref|XP_500281.1| YALI0A20328p [Yarrowia lipolytica]
 gi|74660175|sp|Q6CGD1|DBP4_YARLI RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49646146|emb|CAG84219.1| YALI0A20328p [Yarrowia lipolytica]
          Length = 740

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 179/393 (45%), Gaps = 9/393 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE +P  +   E L    YV  T VQ+  + P L+  D+L +A+TGSGKT+AF + +
Sbjct: 38  VSKFEELPLSEATIEGLKNSHYVTCTDVQKRAIPPALQGHDLLGAARTGSGKTLAFLVPV 97

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    +++S      AL I+PTRELAVQ+ + L  +         + IGG  V  E 
Sbjct: 98  LECLF--RNKWSDVDGLGALVISPTRELAVQIFQVLRKIGRCHSFSAGLVIGGKDVAMEA 155

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     ++      L    +  G ++S++K +VLDEAD +LD+GF+  ++ IL++ P 
Sbjct: 156 DRLAKLNILICTPGRLLQHMDQTSGFDLSNVKMLVLDEADRILDMGFKKTMDAILENLPV 215

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
            R+ L+FSAT + +++ LA+    D   ++   +    +  +     V V L D+ + + 
Sbjct: 216 DRQTLLFSATQTKSVSDLARLSLADPKYISANPDTTSSTPKNLEQNYVCVELQDKLDTLW 275

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
             LR H     IVF S+   V    +        +  L     Q++ +            
Sbjct: 276 GFLRTHTKFKIIVFFSSSKQVRYVYETFRTLQPGIPLLHLHGKQKQGARMDVVSKFSKAS 335

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +    ATD+ ARGID P +  V+  +   +    +HR GR+ R G+ G ++  +    + 
Sbjct: 336 SSCLFATDIVARGIDFPAVHWVVQVDCPEDAATYIHRVGRSARFGKSGKALLFLTPTEEP 395

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRI 386
              +     ++ +      P+ +   +   Q +
Sbjct: 396 AMIQRLEAKHIPINKLTIRPNKKKSIKNQLQAL 428


>gi|221056789|ref|XP_002259532.1| RNA helicase-1 [Plasmodium knowlesi strain H]
 gi|193809604|emb|CAQ40305.1| RNA helicase-1, putative [Plasmodium knowlesi strain H]
          Length = 669

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 185/391 (47%), Gaps = 28/391 (7%)

Query: 5   ENIPQVIGEALSERGY-------------VNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
            +IP  I +   +  +                T +Q   L   L  +D++  A TGSGKT
Sbjct: 212 SDIPPPI-KNFRDMKFPKPILKALKKKKIDKPTQIQMQGLPSILLGRDIIGIAFTGSGKT 270

Query: 52  VAFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTG 102
           + F L L    L    R        PL L I P+RELA Q    +++             
Sbjct: 271 IVFVLPLVMICLEGELRCQIEEGEGPLGLIICPSRELATQTHNVIKYFCEFLHEGGKYPM 330

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           +     IGGVS   + R++Q G H+VV TPGRL D +  K + +   + +  DEAD ++D
Sbjct: 331 LRSLCMIGGVSTFDQGREIQKGIHMVVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLID 390

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           LGF +++   LD   ++R+ L+FSAT+   I   AK+   + + +N+      + D+   
Sbjct: 391 LGFEEEVRNTLDHFSRQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQE 450

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              V    + + ++ +L+  G    ++FC  +  V    + L       +A+ G L Q E
Sbjct: 451 VEYVKEELKLSYLLEVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAIAIHGNLGQTE 509

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  A+ + R+G+  + + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G
Sbjct: 510 RQEAINLFREGKKDILVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTG 569

Query: 343 MSVFVIPQNMQR----RAERLFREANVSVVW 369
           ++   I +N +       + L  EA   +  
Sbjct: 570 IATTFINKNQEEAILLDLKALLIEAKQKIPP 600


>gi|28378872|ref|NP_785764.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300768022|ref|ZP_07077928.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|28271709|emb|CAD64615.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
 gi|300494371|gb|EFK29533.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 447

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 209/467 (44%), Gaps = 29/467 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      + +AL++  +   T+VQE ++      + V+  + TGSGKT  F L + +
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRE 117
            L A+           A+   P+RELA Q+    + L   +     +     G     + 
Sbjct: 64  QLNADE------RYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQI 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +  ++   +++GTPGR+ D +R + L++     +V+DEAD  LDLGF + ++ I    P
Sbjct: 118 EKLNRHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +ML+FSAT+   +T   + Y  + V   I  E+     ID   +     D+++ I  
Sbjct: 178 ADLQMLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        +VF +T+  V   T  L +    V  + G++  +ER   ++ ++  + + 
Sbjct: 238 LLTIGEPYLVLVFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQF 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +          
Sbjct: 298 VVATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGE----- 352

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
               EA VS       +VEA+  +   + ++D   +DS   + +        K DP  I 
Sbjct: 353 ----EAKVS-------AVEAMGIKFKPKAIRDGEIVDSYDRNRRAKRGPKQEKLDPTLI- 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            G+++  +  +    +      +S + R              R + K
Sbjct: 401 -GYVKKSKKKIKPGYKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|138896049|ref|YP_001126502.1| DEAD-box ATP dependent DNA helicase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267562|gb|ABO67757.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Geobacillus
           thermodenitrificans NG80-2]
          Length = 436

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 118/427 (27%), Positives = 199/427 (46%), Gaps = 27/427 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P    + EA+    +   T +QE I+   LR + ++  +QTG+GKT A+ L +   
Sbjct: 6   FTRFPFQPFVIEAIQALRFYKPTEIQERIIPRALRGESMVGQSQTGTGKTHAYLLPIIEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E           A+  APTRELA Q+  E   +         +         +++  
Sbjct: 66  IDPERAEV------QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCFIGGTDKQKA 119

Query: 122 ----QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
                   HIV+GTPGR+ D IR + L++   + +V+DEAD MLD+GF  D++ I    P
Sbjct: 120 LEKLHVQPHIVIGTPGRINDFIREQALDVHTARTLVVDEADLMLDMGFITDVDQIAARMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+ +ML+FSATI   +    K Y ++   + +  +   + +I++  + +   ++   + +
Sbjct: 180 KELQMLVFSATIPEKLKPFLKKYMENPTFIQVEPKQTANKNIEHVLIPLRGREKVKLLYD 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +    AIVF +TR         LAE   +V  L G+L+ +ER   +  +RD   + 
Sbjct: 240 VLVSYNPYLAIVFVNTRKRADEVADQLAEQGLKVGVLHGDLTPRERKKMMNQIRDLEFQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +     Q    
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPTDQDAIA 359

Query: 358 RLFREANVSVV--------WEPAP------SVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           RL +   +S V        W+  P           +E D   ++        ++   KK 
Sbjct: 360 RLEK-MGISFVHRDLVRGEWKDLPPWNRRSKRAGEKEDDLALLVAKLKKAKQVKPGYKKK 418

Query: 404 VDVLLAK 410
           +   L K
Sbjct: 419 LRAELEK 425


>gi|115762569|ref|XP_792708.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115945187|ref|XP_001182545.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 889

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 186/446 (41%), Gaps = 17/446 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   +  +DV+  A+TGSGKT AF L +   L    
Sbjct: 80  LSHAVFKGIMKKGYKIPTPIQRKCIPIIMEGQDVVGMARTGSGKTAAFLLPMLERL---- 135

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R S  S   AL ++PTRELA+Q  +  + L   T +   V +GG  +  +   L     
Sbjct: 136 QRRSAQSGARALILSPTRELALQTLKFTKELARYTDLRSEVILGGDRMDDQFAALHENPD 195

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ T GRL   +    L +  ++ VV DEAD + ++GF + +  IL   P  R+ L+FS
Sbjct: 196 ILIATRGRLLHVLVEMDLKLMQVEYVVFDEADRLFEMGFAEQLNEILSRLPDNRQTLLFS 255

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+  ++   A     +   VR+++ S+  +     +              +        
Sbjct: 256 ATLPKSLVEFASAGLSEPVLVRLDVESKISEQLKSMFLYTRSNDKTAVLLHLLRDVIQPN 315

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF +TR  V    ++L +       +   L Q  R   +      +  + + TD+A
Sbjct: 316 QLTVVFLATRHHVDYVRELLEQAGISNTYIYSALDQAARKINVAKFTHKKTHILLVTDIA 375

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L++VI+      P+  +HR GR  RAGR G +  ++  +       L     
Sbjct: 376 ARGIDIPMLDVVINFHFPGKPKLFVHRVGRVARAGRTGTAYSMVAPDELSYLIDLHLFLG 435

Query: 365 VSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
             + +      + E        R+ Q  +       D+++ V   L K   +       R
Sbjct: 436 KDIAFFKNDDKTSEEDVSGKLGRVPQSVV-------DDEESVLRNLHKMSSD--LTNLKR 486

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRD 448
                +       P+   +   R ++
Sbjct: 487 PAFNAMKNYLRSRPLPSPASVKRSKE 512


>gi|308499411|ref|XP_003111891.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
 gi|308268372|gb|EFP12325.1| hypothetical protein CRE_29486 [Caenorhabditis remanei]
          Length = 593

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 156/393 (39%), Gaps = 8/393 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            NI   +   L+ +     + +Q   +   ++ +++L SA TGSGKT+AF L +   +L 
Sbjct: 150 SNISSSLLSRLTGQSIRQPSPIQMQSIPFMMKRRNILASAPTGSGKTLAFALPVIEEILE 209

Query: 65  ENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
              R  +S +S  L + + PTRELA Q   E     A+T + VA   G  +  +    L 
Sbjct: 210 LKQRADYSKSSKLLTIVLEPTRELAAQTYTEFVKYCAETSISVANFSGEETDIQHADILV 269

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +  + +V    ++        +     +   + E  E         I +    +   R  
Sbjct: 270 STPNRIVFHLDKIDTSALRWLIVDESDRLFEVIEGQEKCFRNQLGAI-YKACDAKCTRVA 328

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +           +N     +       +   S             +  AI N+LR  
Sbjct: 329 FFSATFSHEVEKWCKENIDNIGMVCVGERNSSNTSVKQELTYCGTEDGKKIAIRNLLRTS 388

Query: 243 GAKNAIVFCSTRASVSRFTK--VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               A+VF  ++    +  K     +   +V +++   S +ER   ++  R G   V + 
Sbjct: 389 FKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDKERDETMERFRRGEIWVLVC 448

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL- 359
           T++  RG+DL D+ LVI+ +L ++  + +HR GRTGRAG+ G +V        +  + + 
Sbjct: 449 TELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFTDTDMKYIKSIA 508

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDP 390
              R++   V        +  R+R  + +   P
Sbjct: 509 TVIRQSGFEVPEYLLEMKKVSRDRKKEMLKHAP 541


>gi|225713468|gb|ACO12580.1| ATP-dependent RNA helicase DBP4 [Lepeophtheirus salmonis]
          Length = 491

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 165/387 (42%), Gaps = 11/387 (2%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F++  I + + E L +  + N T +Q+  +   L   DV+  A+TGSGKT+ F + + S
Sbjct: 55  TFDDFIIHKTLKENLKKNNFENPTEIQKKTIPAILESHDVISIAKTGSGKTICFVVPIIS 114

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +L   + F+      AL I PTRELAVQ    ++ L   T +     IGG+   +E   
Sbjct: 115 RIL---ENFNEDDKLSALIITPTRELAVQTYELIKKLTVNTKIKSFNVIGGIKFKKETYH 171

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++    ++      L        L    L  +VLDE D+M++LGF++ I+ I++  P  +
Sbjct: 172 VEAAHILICTPGRLLQHFSELPNLRTELLDVLVLDEFDKMIELGFKEAIKDIIEYLPDTQ 231

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R+L+ +       +          +  + +  +  +     ++          ++++ + 
Sbjct: 232 RVLLSATFKHCNFSQEIVKLTDPKIFSDFSKNDVTNFYKILKSTEKINYL--YSLLSHIS 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               +  IVF ST         + ++       LS  + QQ R       RD  + +   
Sbjct: 290 KSDNRKVIVFFSTCKGAKFHYLLFSKFFKDTFMLSSSVKQQSRLKNYSQFRDMMSGILFC 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D P++  VI  +    PE  +HR GRT R G+ G S   + +  +R    L 
Sbjct: 350 TDLAARGLDFPNVSTVIQFDCPDTPETYIHRIGRTARIGKSGSSFIFLLEKEERLLNFLE 409

Query: 361 ----REANVSVVWEPAPSVEAIRERDA 383
                ++ +         +E    R  
Sbjct: 410 NINLEKSEIQQTKIELAEIEKFGIRRL 436


>gi|261417664|ref|YP_003251346.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC61]
 gi|319767530|ref|YP_004133031.1| DEAD/DEAH box helicase [Geobacillus sp. Y412MC52]
 gi|261374121|gb|ACX76864.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC61]
 gi|317112396|gb|ADU94888.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. Y412MC52]
          Length = 436

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 120/427 (28%), Positives = 199/427 (46%), Gaps = 27/427 (6%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P    I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+ L +   
Sbjct: 6   FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRE 117
           +  E           A+  APTRELA Q+  E   +         +            + 
Sbjct: 66  IKPERAEV------QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L    HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    P
Sbjct: 120 LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  +ML+FSATI   +    K Y ++   V++  +   + +I++  + +   ++   + +
Sbjct: 180 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVNPKQTANENIEHVLIPLRGREKTKLLHD 239

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  +    AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   + 
Sbjct: 240 VLLSYNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQY 299

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    
Sbjct: 300 VVATDLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIA 359

Query: 358 RLFREANVSVV--------WEPAPSVEAIRERDAQR------ILQDPLFLDSIQGDEKKM 403
           RL +   +S V        W+  P      +R  ++      +         ++   KK 
Sbjct: 360 RLEK-MGISFVHRDLVRGEWKELPPWNRRSKRAGEKDDELALLFAKLKKTKQVKPGYKKK 418

Query: 404 VDVLLAK 410
           +   L K
Sbjct: 419 LRAELEK 425


>gi|198419625|ref|XP_002130533.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
           [Ciona intestinalis]
          Length = 672

 Score =  169 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 117/428 (27%), Positives = 196/428 (45%), Gaps = 18/428 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L ++G   L  +Q    N     KDV+  A+TG+GKT++F + L   L+    +      
Sbjct: 105 LKKKGVAYLFPIQIQSFNHVYDGKDVVAQARTGTGKTLSFAIPLVEKLIMNRCK-DYGRP 163

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA+QV ++ + +    G+      GG    ++ R ++ G  IVVGTPGR
Sbjct: 164 PKVLVMAPTRELAIQVRKDFQDISQ--GLSSVCIYGGTPYFQQERSMRGGVDIVVGTPGR 221

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM---------F 185
           + DH++   L +  ++ VVLDE D+MLD+GF   +E IL  +  + R             
Sbjct: 222 IMDHVQKGNLQLGSVEHVVLDEVDQMLDMGFAPKVEEILGYAYTEEREGPPQTLLFSATC 281

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR--DNAIVNILRYHG 243
              +        +  +   V     S  R  + +++ A+    SDR      V  +    
Sbjct: 282 PPWVRNTSRKYMRPSETVHVDTIGKSLVRTATTVEHLAIRCQYSDRAECIGNVVQMYSGQ 341

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F  T+   +      A    +   L G++ Q++R   L+  RDG  R  +AT+V
Sbjct: 342 HGRAMIFTDTKKDANELVVCEALQQQKAQVLHGDIEQRQREITLKAYRDGTVRCLVATNV 401

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+P+++LVI     S+ ++ +HRSGRTGRAGR G+ V           +++ R A
Sbjct: 402 AARGLDIPEIDLVIQTSPPSDIDSYIHRSGRTGRAGRTGVCVCFYKPREDMMIKKVERVA 461

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMVDVLLAKH---DPEKIAAG 419
            +       P  + I +      +     +D  I  +  K  + + + H     E +A+ 
Sbjct: 462 GIKFKMVGPPQPKDIVKASVNDAIASLDLVDKKITAEFMKHAEQVASNHAGGAMEALASA 521

Query: 420 FLRIHRAG 427
              +  A 
Sbjct: 522 LAYMAGAS 529


>gi|315445551|ref|YP_004078430.1| DEAD/DEAH box helicase [Mycobacterium sp. Spyr1]
 gi|315263854|gb|ADU00596.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 505

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 184/376 (48%), Gaps = 11/376 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGVSV 114
            +  + +R      P AL + PTREL +QV  +L                V    GG   
Sbjct: 71  RITTDTERPLTGI-PRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPY 129

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   LQ G  +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL 
Sbjct: 130 EPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILK 189

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+ ++FSAT+   I T       Q   +R      +  H   +  A      D+ 
Sbjct: 190 QIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKV 249

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R+
Sbjct: 250 EMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  + 
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 353 QRRAERLFREANVSVV 368
             R   + +   +   
Sbjct: 370 LPRWSMIDKALGLDTP 385


>gi|291236621|ref|XP_002738237.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 21-like
           [Saccoglossus kowalevskii]
          Length = 700

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/426 (29%), Positives = 201/426 (47%), Gaps = 23/426 (5%)

Query: 4   FENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F N    PQ I  +L  R   +L  +Q    +      DV+  A+TG+GKT+AF L L  
Sbjct: 120 FSNFRLSPQTIA-SLKARSITHLFPIQAKTFDYVYDGHDVIAQARTGTGKTLAFALPLVE 178

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +N  F     P  L +APTRELA QV  + +   +   +      GG +   +   
Sbjct: 179 KL--KNTEFKAGRPPQVLVMAPTRELAKQVSEDFQ--ASNPRLSTLCVYGGTAYWPQESA 234

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  ++VGTPGR+ D+++   LN+S LK V+LDE D MLD+GF D +E IL +S K  
Sbjct: 235 IRRGVDVLVGTPGRILDYVQKNTLNLSQLKHVILDEVDRMLDMGFADTVEEILSASYKMD 294

Query: 181 RMLMFSAT---------ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                  T                     +   V +    + +  + +++ A+      R
Sbjct: 295 NPGENPQTLLFSATLPEWVYRTAKKYMKSEIKRVDLIGQQKLKTATTVEHLAIRCHYRQR 354

Query: 232 DNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
              I ++++ +  K+   ++F  T+   +      +      V   G+++Q +R   L+ 
Sbjct: 355 AATISDVVQVYSGKHGRCMIFTETKKDANEMGLSSSIRQDVQVLH-GDIAQNQREITLKG 413

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            RDG+ R  +ATDVAARG+D+P+++L++  E   + EN +HRSGRTGRAGR G+SV    
Sbjct: 414 FRDGKFRCLVATDVAARGLDIPEVDLIVMCEPPKDAENYIHRSGRTGRAGRTGVSVCFYK 473

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
            N +   + + R A +      AP  E I +  A   L+    LD++     K+      
Sbjct: 474 PNEEHVLKLIERRAGIKFRRVGAPQPEDIIKTSADDALKS---LDAVPESAIKLFHEAAE 530

Query: 410 KHDPEK 415
           K   EK
Sbjct: 531 KLIEEK 536


>gi|255072735|ref|XP_002500042.1| predicted protein [Micromonas sp. RCC299]
 gi|226515304|gb|ACO61300.1| predicted protein [Micromonas sp. RCC299]
          Length = 523

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/394 (28%), Positives = 189/394 (47%), Gaps = 14/394 (3%)

Query: 4   FEN---IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           FE+   +P+ +  A+  +GY   T +Q   +   L   DV+  A+TGSGKT AF + +  
Sbjct: 73  FESMDILPE-VFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLH 131

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       S  +   A+ ++PTRELA+Q  +  + L   T +     +GG S+  +  D
Sbjct: 132 KLRQH----SLKAGARAVVLSPTRELALQTYKFAQELSKFTDLRCVCVVGGDSMEAQFDD 187

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L +   ++V TPGRL  H+      +I  +  VVLDEAD +L++GF D +  I+     +
Sbjct: 188 LASNPDLLVATPGRLLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLRDIMKQVADQ 247

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+  A+    +   KD   + + +E +   D+     ++   ++  +++  L
Sbjct: 248 RQCLLFSATMPSALAEFVRVGLKDPQVIRLDAEMKVSPDLKLSFTVMRQDEKIPSLLFFL 307

Query: 240 RYHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           R      +  +VF +TR  V     VL      V A+ G +    R   +   R+ +  V
Sbjct: 308 REVVPENQQTVVFTATRHHVELLVTVLESEGITVSAVYGSMDMAARKLHIGKFRNRKTSV 367

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + TDVAARGID+P L+ V++ +    P+  +HR GR  RAGR G++  ++ +       
Sbjct: 368 MVVTDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRTGVAHSLLVKEEMGFLV 427

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
            L      S+V  P    E    RD  R + D  
Sbjct: 428 DLHLFLGRSLVAAPVKPPE---SRDEARQIADEA 458


>gi|145225254|ref|YP_001135932.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217740|gb|ABP47144.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 505

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 184/376 (48%), Gaps = 11/376 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGVSV 114
            +  + +R      P AL + PTREL +QV  +L                V    GG   
Sbjct: 71  RITTDTERPLTGI-PRALVVVPTRELCIQVYEDLVHASKYLMADDTRKLTVTAIYGGRPY 129

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   LQ G  +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL 
Sbjct: 130 EPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLNVLVLDEADEMLDLGFLPDIERILK 189

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+ ++FSAT+   I T       Q   +R      +  H   +  A      D+ 
Sbjct: 190 QIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEGVQGSATHDTTEQFAYRAHALDKV 249

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R+
Sbjct: 250 EMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFRVGAVHGDLGQSAREKALKGFRN 309

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  + 
Sbjct: 310 GDVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 353 QRRAERLFREANVSVV 368
             R   + +   +   
Sbjct: 370 LPRWSMIDKALGLDTP 385


>gi|301610484|ref|XP_002934776.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 399

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/417 (24%), Positives = 188/417 (45%), Gaps = 71/417 (17%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +    V+ E   + G+   T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 19  KTFRELGVTDVLCETCEQLGWKQPTKIQIEAIPVALQGRDIIGLAETGSGKTGAFALPIL 78

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            TLL    R        AL + PTRELA Q+  + E L +  GV  AV +GG+ +  +  
Sbjct: 79  QTLLESPQR------LYALVLTPTRELAFQISEQFEALGSTIGVKSAVIVGGIDMMSQSL 132

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    H+V+ TPGRL DH+      N+  LK +V+DEAD +L++ F  +++ IL   P+
Sbjct: 133 ALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 192

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+  +FSAT++  +  L +   KD V+  ++S+ +    +    V +    ++  + ++
Sbjct: 193 DRKTFLFSATMTKKVQKLQRAALKDPVKCAVSSKYQTVEKLQQFYVFIPSKFKNKRLGSL 252

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            ++     +I                                                  
Sbjct: 253 NKFKAKSRSI-------------------------------------------------L 263

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +++VI+ ++ ++ ++ +HR GRT RAGR G ++  + Q      +R
Sbjct: 264 LATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQR 323

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           +       +   P                ++ + L+    + ++   + L +H  +K
Sbjct: 324 IEHLIGKKLPAFPTQE-------------EEVMMLNERVSEAQRFARIELREHGEKK 367


>gi|109893656|sp|Q9FFQ1|RH31_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 716

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 178/400 (44%), Gaps = 19/400 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P   +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 250 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 309

Query: 62  LLAENDRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++           P  LAL I PTRELA Q   E   L      +    V  G      +
Sbjct: 310 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 369

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +R   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 370 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 429

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + PK+R+  +FSAT+   +  +     +                      +  ++  D  
Sbjct: 430 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 489

Query: 235 I-------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
                      +  +     IVFC+T         +L E    V  +     Q  R+   
Sbjct: 490 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 549

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + +
Sbjct: 550 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 609

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +    +     L    ++ +   P PS++    +  Q+ L
Sbjct: 610 LAPWEEYFLSSL---KDLPITKSPLPSIDPETVKKVQKAL 646


>gi|28900438|ref|NP_800093.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ3810]
 gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 416

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  +D++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
            +L + +        ++ L + PTRELA QV   ++         +      GGVSV+ +
Sbjct: 69  KILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +T LA++   D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPEKVTALAQHLLNDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    +  E     E
Sbjct: 367 VIEKKNKFQLEREQVEGFE 385


>gi|296411733|ref|XP_002835584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629370|emb|CAZ79741.1| unnamed protein product [Tuber melanosporum]
          Length = 388

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/373 (29%), Positives = 184/373 (49%), Gaps = 20/373 (5%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE  ++ + +   +   GY + ++VQ   +    + +D +  AQ+G+GKT  F +++  
Sbjct: 26  TFEAMHLKEGLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQ 85

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +       +      AL ++PTRELA Q+   +  L     V    CIGG +V  + R 
Sbjct: 86  VID------TAVRETQALVLSPTRELATQIQSVVMALGDYMNVQCHACIGGTNVGEDIRK 139

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L   H+K +VLDEADE+L+ GFR+ I  +    P   
Sbjct: 140 LDYGQHVVSGTPGRVADMIRRRNLRTKHIKMLVLDEADELLNRGFREQIYDVYRYLPPST 199

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDNAIVNIL 239
           ++++ SAT+   +  +   +  D VR+ +  +      +    + +     + + + ++ 
Sbjct: 200 QVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 259

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  A++FC+TR  V   T+ + E  F V A+ GE+ Q+ER   +Q  R G +RV I
Sbjct: 260 DTLTITQAVIFCNTRRKVDWLTEKMREANFTVSAMHGEMPQKERDAIMQEFRQGNSRVLI 319

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           +TDV ARGID+  + L           N +HR GR+GR GRKG+++  +     R    +
Sbjct: 320 STDVWARGIDVQQVSL-----------NYIHRIGRSGRFGRKGVAINFVTSEDVRILRDI 368

Query: 360 FREANVSVVWEPA 372
               +  +   P 
Sbjct: 369 ELFYSTQIDEMPM 381


>gi|167521868|ref|XP_001745272.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776230|gb|EDQ89850.1| predicted protein [Monosiga brevicollis MX1]
          Length = 552

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/398 (26%), Positives = 188/398 (47%), Gaps = 16/398 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F  +P        L + GY   T +Q   L   L+ +DVL +A+TGSGKT+AF + +
Sbjct: 36  IQKFAQLPLSSATQRGLKKAGYTRPTEIQRDALIKALKGQDVLAAAKTGSGKTLAFLIPV 95

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +  R+S       L I+PTRELA+Q    L  +     +   + +GG ++ RE+
Sbjct: 96  LEGLFRQ--RWSKPDGVGGLIISPTRELALQTYEVLTKIGCFHDMSAGLVVGGTTLEREK 153

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   I+      L       G +  +L+ +VLDEAD +LD+GF   +  IL++ PK
Sbjct: 154 AVISNTNIIICTPGRLLQHMDETFGFSCDNLQMLVLDEADRILDMGFAKTLNAILENLPK 213

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           +R+ ++FSAT + ++  LA+   K    +++  +++  +        + V L+ + + + 
Sbjct: 214 QRQTMLFSATQTKSVKDLARLSLKMPEFISVHEQDKTATPHKLVQAYMTVPLNQKLDVLF 273

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + +R H     +VF S+   V    + L      V  L+    Q++              
Sbjct: 274 SFIRSHVNVKMLVFVSSCKQVRFIYETLRRMRPGVPLLALYGKQKQAKRVAIYNDFSKKT 333

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM- 352
             V +ATD+AARG+D P ++ V   +   +    +HR GRT R G++G + + ++P    
Sbjct: 334 HAVLLATDIAARGLDFPSVDWVFQLDCPEDVATYIHRVGRTARYGKEGKALLTLLPSESA 393

Query: 353 ------QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
                 +R+ E +  EAN S +    P ++A      +
Sbjct: 394 MVQQLAERKVEVVSTEANASKIKSITPRLKAFCAESPE 431


>gi|239629709|ref|ZP_04672740.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239528395|gb|EEQ67396.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 448

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 197/451 (43%), Gaps = 14/451 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   + + L+       T +Q+ ++   LR ++++  +QTGSGKT AF + L S
Sbjct: 5   FKQFQ-LKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLS 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            +    D      A   +  AP+RELA Q+    +          +  +  G     +  
Sbjct: 64  MVDPTED------ATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQID 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +   +  H+ +GTPGR+ D I+   L  S ++  V+DEAD  LD+GF + ++ I  S P 
Sbjct: 118 KLQNHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +M +FSATI   +    + Y  +   + +  ++     ++   +     D++  I  +
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  
Sbjct: 238 VTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYV 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  + +VI+AE+  + E  +HR GRTGR G  G +V +     + +   
Sbjct: 298 VATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAE 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L     +    +   + E +    R R   R  +      +I+G  KK     +  +  +
Sbjct: 358 LE-HMGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
              A  L   R    A  +         R R
Sbjct: 417 IRTAVLLERKRNTKIARRQALLAEKRKNRKR 447


>gi|120402790|ref|YP_952619.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119955608|gb|ABM12613.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 494

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 183/376 (48%), Gaps = 11/376 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL+E G  +  ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 11  TFAQLGVRDEIVRALAENGIEHAFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLH 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIGGVSV 114
            +  + +R      P AL + PTREL +QV  +L                V    GG   
Sbjct: 71  RITTDTERPLTGI-PRALIVVPTRELCIQVYEDLVGASKYLMADETRKLTVTAIYGGRPY 129

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   LQ G  +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL 
Sbjct: 130 EPQIEALQKGVDVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILK 189

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P KR+ ++FSAT+   I T       Q   +R      +  H   +  A      D+ 
Sbjct: 190 QIPAKRQAMLFSATMPDPIITLARTFMTQPTHIRAEAPHSSATHDSTEQFAYRAHALDKV 249

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +  IL+  G    ++F  T+ +  +    L E  F+V A+ G+L Q  R  AL+  R 
Sbjct: 250 EMVARILQAEGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQAAREKALKSFRT 309

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  + 
Sbjct: 310 GEVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGIAVTLVDWDE 369

Query: 353 QRRAERLFREANVSVV 368
             R   + +   +   
Sbjct: 370 LPRWSMIDKALGLDTP 385


>gi|54024485|ref|YP_118727.1| putative RNA helicase [Nocardia farcinica IFM 10152]
 gi|54015993|dbj|BAD57363.1| putative RNA helicase [Nocardia farcinica IFM 10152]
          Length = 518

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/380 (32%), Positives = 184/380 (48%), Gaps = 6/380 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+ +AL   G      +Q A +   L  KDVL    TGSGKT+AFGL +   L    
Sbjct: 37  LPAVLVQALRRNGIDAPFPIQAATVPDALAGKDVLGRGPTGSGKTLAFGLPMLVRLAGNA 96

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA Q+ R L+      G+ VA  +GG  + R+   L  G  
Sbjct: 97  ---AAPRRPRGLVLVPTRELAAQIERALDEPALALGLRVASVVGGAPIKRQADRLARGVD 153

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D I      +  +    LDEAD M D+GF   +  +LD +P   + L+FS
Sbjct: 154 LLIATPGRLSDLIAQGAAALDDVSITALDEADHMADMGFLPQVTRLLDRTPADGQRLLFS 213

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K Y ++ V  + A  +   + + +  + V  +D+    V          
Sbjct: 214 ATLDGEVDKLVKRYLRNPVTHSTAPPSASVATMSHHLLYVRKADKRA--VIAEIAAREGL 271

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  K L        AL G  +Q  R+  L    DG   V + TDVAAR
Sbjct: 272 TILFVRTKHGADRLAKQLRAAGIAAGALHGGKAQNNRTRTLAAFADGSVPVLVTTDVAAR 331

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+HA+  + P+  LHR+GRT RAG  G+ V ++ ++ +   E++ R+A V 
Sbjct: 332 GIHVDGISLVVHADPPAEPKAYLHRAGRTARAGEDGVVVTLVTEDERADVEKMTRKAGVD 391

Query: 367 VVWEPA-PSVEAIRERDAQR 385
           VV     P   A+RE    R
Sbjct: 392 VVGVNVTPGHPALREITGAR 411


>gi|254557077|ref|YP_003063494.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
 gi|254046004|gb|ACT62797.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
          Length = 447

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 209/467 (44%), Gaps = 29/467 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      + +AL++  +   T+VQE ++      + V+  + TGSGKT  F L + +
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRE 117
            L A+           A+   P+RELA Q+    + L   +     +     G     + 
Sbjct: 64  QLNADE------RYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQI 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +  ++   +++GTPGR+ D +R + L++     +V+DEAD  LDLGF + ++ I    P
Sbjct: 118 EKLNRHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +ML+FSAT+   +T   + Y  + V   I  E+     ID   +     D+++ I  
Sbjct: 178 ADLQMLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        ++F +T+  V   T  L +    V  + G++  +ER   ++ ++  + + 
Sbjct: 238 LLTIGEPYLVLIFANTKERVQELTHYLRQQGLTVAMIHGDIQPRERKRVMRDVQQLKYQF 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +          
Sbjct: 298 VVATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGE----- 352

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
               EA VS       +VEA+  +   + ++D   +DS   + +        K DP  I 
Sbjct: 353 ----EAKVS-------AVEAMGIKFKPKAIRDGEIVDSYDRNRRAKRGPKQEKLDPTLI- 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            G+++  +  +    +      +S + R              R + K
Sbjct: 401 -GYVKKSKKKIKPGYKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|229019510|ref|ZP_04176327.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
 gi|229025752|ref|ZP_04182153.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228735552|gb|EEL86146.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1272]
 gi|228741766|gb|EEL91949.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH1273]
          Length = 436

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/374 (29%), Positives = 185/374 (49%), Gaps = 12/374 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L  
Sbjct: 3   LQTFTQYDFKPFLIDAVRELRFSEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            + + A  +          +  APTRELA Q+  E+    ++      +     IGG   
Sbjct: 63  LNRIDASREEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDK 116

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R    L+   HIVVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I  
Sbjct: 117 QRSIEKLKKQPHIVVGTPGRIKDLVEEKALFVYKANTIIVDEADLMLDMGFIQDVDKIAG 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   
Sbjct: 177 RMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIEL 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L       AIVF +T+         LAE   +V  + G+LS ++R   ++ +RD  
Sbjct: 237 VKNMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     + 
Sbjct: 297 FQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTIYDPANEE 356

Query: 355 RAERLFREANVSVV 368
             + L ++ ++   
Sbjct: 357 ALDSLEKQRHIEFK 370


>gi|226357411|ref|YP_002787150.1| ATP-independent RNA helicase [Deinococcus deserti VCD115]
 gi|226319401|gb|ACO47396.1| putative ATP-independent RNA helicase [Deinococcus deserti VCD115]
          Length = 469

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/379 (32%), Positives = 194/379 (51%), Gaps = 10/379 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F  +P        L   GY  +T++Q+  L   L+ +D+L  A+TGSGKTVAFG+ +
Sbjct: 3   MSPFNVLPLKAAFLANLDTLGYREMTTIQQRSLPHVLKGRDLLAQAETGSGKTVAFGIGI 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              L     +         L + PTRELA QV  EL  L    G +  +   GGV +  +
Sbjct: 63  LHRLDPARLKV------QGLVLCPTRELADQVANELRRLARGEGNIKVLTLTGGVPLRHQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++G HIVVGTPGR+ DH+    +N+  +  +VLDEAD M D+GF D++  I+ + P
Sbjct: 117 VTSLEHGVHIVVGTPGRIRDHLARGSINLEDVHTLVLDEADRMTDMGFYDEMASIVCACP 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + R+ L+FSAT    I      +  D V V +       + I      +   +RD AI  
Sbjct: 177 RTRQTLLFSATYPDNIKQTTAEFLNDPVEV-VVDAQHTATQIKQLFYEIGFDERDAAIGR 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L +    + +VFC+TR       + L    F  + L G+L Q+ER   L +  +    V
Sbjct: 236 LLNHFKPLSTLVFCNTRVHCRELAEELQAQGFSALGLHGDLEQRERDEILVLFSNRSCSV 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L+ V++A++S + E  +HR GRTGRAG  G+++ +   N ++   
Sbjct: 296 LVATDVAARGLDISRLDAVMNADVSRDTEVHVHRVGRTGRAGEAGLALTLCSPNEKKWVS 355

Query: 358 RLFREANVSVVWEPAPSVE 376
            +      +V W     ++
Sbjct: 356 LIEDYQKTTVQWANLDDLD 374



 Score = 50.0 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRT 524
                 +  G K K     ++  L   +G+ R+ +G I V   +T+V +     D   + 
Sbjct: 384 PMVTLWIMGGKKDKLRPGDVLGALTGDAGLLREQVGKITVSEFMTYVAIDRIVADQAFQ- 442

Query: 525 VKLDKGIQLKYLGGEKPDFRGYKSSGFKSK 554
                  +L   G    +   +K   FK +
Sbjct: 443 -------RLTRGGAPGRNVGAFKGRSFKMR 465


>gi|182682666|ref|YP_001830826.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M23]
 gi|182632776|gb|ACB93552.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
 gi|307578947|gb|ADN62916.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 544

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 182/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 16  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSS 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   R+R  L+ G
Sbjct: 76  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQREMLRKG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 136 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 NEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 316 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVV 368
                + 
Sbjct: 376 YIEQKIP 382


>gi|28199914|ref|NP_780228.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa Temecula1]
 gi|32363278|sp|Q879Y6|RHLB_XYLFT RecName: Full=ATP-dependent RNA helicase rhlB
 gi|28058045|gb|AAO29877.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
          Length = 543

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 182/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 15  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSS 74

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   R+R  L+ G
Sbjct: 75  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDRQREMLRKG 134

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 135 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 194

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  
Sbjct: 195 TLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSR 254

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 255 NEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 314

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 315 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 374

Query: 362 EANVSVV 368
                + 
Sbjct: 375 YIEQKIP 381


>gi|154336403|ref|XP_001564437.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134061472|emb|CAM38500.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 803

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 123/517 (23%), Positives = 212/517 (41%), Gaps = 43/517 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  + + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + + +
Sbjct: 24  FQSF-GLDKPLLDAILKKGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLN 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A     S       L ++PTREL++Q       L     +  A  +GG S+ ++   
Sbjct: 83  ALKAH----SKVVGIRGLVLSPTRELSLQTLHNGFALNRFLDLRFAALVGGDSMEQQFEL 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   +VV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 139 LASNPDVVVATPGRLLHIMEEASLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKIPESC 198

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           +  +FSAT+   +         + V + + SE      +   A LV   ++  A++ +L+
Sbjct: 199 QRALFSATMPSVLAEFTSAGLHNPVVIRLDSEMTLSDQLKQSAFLVRNGEKVAALIVLLK 258

Query: 241 Y--------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                         A++F  ++  V     +L  +     A+ G++ Q+ R  A++    
Sbjct: 259 RLLHVGEAIVNNAQALIFVESKFHVEYLQMILTTYGISASAVHGQMDQEARRLAVRSFAK 318

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 319 RETTVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSLMTFED 378

Query: 353 QRRAERLFREANVSVVWEPAPS---------------VEAIR-ERDAQRIL--QDPLFLD 394
                 L +     +   P P                 E I+ E D  + L   D    +
Sbjct: 379 FPYYIDLMQFIGRPLQSAPVPGDLLFTPDDGCYGRLPEEDIQLELDFLKRLHENDVEVRN 438

Query: 395 SIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFK 454
             +  E         K      A    R  +           +    G  R R D   F 
Sbjct: 439 MARVVEHAHTKFNRTKKKSTHEAIQEARKPQYAFDRTPLHPMLLERLGSTRLRADEARFD 498

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRS 491
           +               L +GSK+K         +CR+
Sbjct: 499 LKRFKPKE------LFLEMGSKEKLF------AICRA 523


>gi|328708524|ref|XP_001949320.2| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
           [Acyrthosiphon pisum]
          Length = 478

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 160/355 (45%), Gaps = 4/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + +RGY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L    
Sbjct: 35  LSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEKLTQHT 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL ++PTRELAVQ  + L+ +   T +  AV +GG  +  +   + +   
Sbjct: 95  --VNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHSAPD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR         L + +++ VV DEAD + ++GF + +  I+   P+ R+ L+FS
Sbjct: 153 IVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTLLFS 212

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   +   A+        +R+++ S+      + +  V     D     +        
Sbjct: 213 ATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVVKPD 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+  V     +L         +  +L    R       + G  +  I TD+A
Sbjct: 273 SMTIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLITTDIA 332

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARGID+P L+ VI+    +  +  +HR GR  RAG+ G +  ++ ++       L
Sbjct: 333 ARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYLLDL 387


>gi|320581342|gb|EFW95563.1| Putative nucleolar DEAD box RNA helicase [Pichia angusta DL-1]
          Length = 742

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 181/369 (49%), Gaps = 8/369 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
              F+++P  +     + E  YV +T +Q   +   L+  D+L +A+TGSGKT+AF + +
Sbjct: 42  FTKFDDLPLTKNTLRGVKESSYVTMTDIQRDSIPLALKGHDILGAAKTGSGKTLAFLIPV 101

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ EN  ++      AL I+PTRELA+Q+   L  +         + IGG     E+
Sbjct: 102 IEKLVHEN--WNEFDGVGALIISPTRELAMQIYEVLLKIGKHHSFSAGLVIGGKDYEFEK 159

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++      L    +   LN+++L+ +VLDEAD +LDLGF+  ++ I+ + P 
Sbjct: 160 ERIGKMNILIGTPGRLLQHMDQSATLNLTNLQILVLDEADRILDLGFKKTLDDIISNLPP 219

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-DYRAVLVALSDRDNAIVN 237
           +R+ L+FSAT + ++  LA+    +   VN +S+     +  +   V++ L D+ + + +
Sbjct: 220 ERQSLLFSATQTKSVQDLARLSLVNPEYVNASSDTSSTPESLEQSYVVIRLQDKLDILWS 279

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGRA 295
            ++ H     +VF S+   V    +   +    +  +     Q++++         + R 
Sbjct: 280 FIKSHLDSKILVFVSSSKQVHFIYEAFRKLQPGISLMKLHGRQKQKARMETTFKFTESRH 339

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQR 354
               ATDV ARG+D P ++ V+  +   +    +HR GR+ RAGR G S+  + P   + 
Sbjct: 340 CCLFATDVVARGLDFPAIDWVVQLDCPEDVATYIHRVGRSARAGRAGKSLLMLTPSEEEP 399

Query: 355 RAERLFREA 363
             +RL  + 
Sbjct: 400 FVKRLESKK 408


>gi|307181491|gb|EFN69083.1| Probable ATP-dependent RNA helicase DDX23 [Camponotus floridanus]
          Length = 669

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF + L   +  
Sbjct: 246 SGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITN 305

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 306 LPKIERLDEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRL 365

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 366 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 425

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 426 KPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPT 485

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       K L +  +    L G
Sbjct: 486 ERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLAKGLEKFGYNACTLHG 545

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 546 GKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 605

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RAG+ G+++    ++       LF +   +++  P 
Sbjct: 606 RAGKAGLAISFCTKDDSH----LFYDLKQTILASPI 637


>gi|170029357|ref|XP_001842559.1| DEAD-box ATP-dependent RNA helicase 8 [Culex quinquefasciatus]
 gi|167862390|gb|EDS25773.1| DEAD-box ATP-dependent RNA helicase 8 [Culex quinquefasciatus]
          Length = 426

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 161/339 (47%), Gaps = 9/339 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE   + + +   + E+G+   + +QEA +   L  KD+L  A+ G+GKT A+ + +   
Sbjct: 50  FEEFCLKRELLMGIFEKGWEKPSPIQEAAIPIALVGKDILARAKNGTGKTGAYSIPVLEQ 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +    D         AL I PTRELA+Q  +    L     + V V  GG ++  +   +
Sbjct: 110 IDPTKDYI------QALIIVPTRELALQTSQICIELAKHMHIRVMVTTGGTNLKDDIMRI 163

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGR+ D +  +  N+++ + +VLDEAD++L   F+  ++ ++   PK+R+
Sbjct: 164 YQKVQVIIATPGRILDLMDKEVANMANCRMLVLDEADKLLSQDFKGMLDHVIMKLPKERQ 223

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSAT   ++    + + ++   +N+  E             V    + + +  +   
Sbjct: 224 ILLFSATFPLSVKNFMEKHLREPYEINLMEELTLKGV-TQYYAFVQERQKVHCLNTLFSK 282

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                +I+FC++   V    K + E  +    +  ++ Q  R+      R G  R  + +
Sbjct: 283 LQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMQQAHRNRVFHDFRSGLCRNLVCS 342

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           D+  RGID+  + +VI+ +     E  LHR GR+GR G 
Sbjct: 343 DLFTRGIDVQAVNVVINFDFPKMAETYLHRIGRSGRFGH 381


>gi|91082293|ref|XP_973907.1| PREDICTED: similar to DEAD-box helicase Dbp80 [Tribolium castaneum]
 gi|270007465|gb|EFA03913.1| hypothetical protein TcasGA2_TC014047 [Tribolium castaneum]
          Length = 458

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 151/392 (38%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  N+   + + + + G+   + +QE  L   L    ++++  AQ+G+GKT AF L
Sbjct: 70  VKTFEALNLNPNLLKGVYDMGFNAPSKIQETALPTLLANPPQNLIAQAQSGTGKTAAFVL 129

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +       +    P  L ++PT ELA+Q G     +      +            
Sbjct: 130 AMLSRVD------ASLKYPQVLCLSPTYELAIQTGEVAAHMAKFCPEIEMKYAVRGEEVS 183

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               L     I                      +  +   +            I    + 
Sbjct: 184 RGSHLTEHIIIGTPGKVLDWALKFRVFDLKKLTVFVLDEADVMIATQGHQDQCIRIHKNL 243

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P  + M   +      +                  E    +   Y        ++ NA+
Sbjct: 244 GPNCQMMFFSATYDQQIMEFAEMIVPDSITIRLKREEESLDNIQQYYVKCSGPQEKYNAV 303

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI    G   AI+FC TR + S   + +++    V  L+G+L+ ++R N L   R G+ 
Sbjct: 304 TNIYGTVGVGQAIIFCHTRRTASWLAEKMSKDGHAVAVLTGDLTVEQRINVLDRFRSGQE 363

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V +RGID+  + +V++ +L       ++ +  LHR GRTGR G++G+++ ++ 
Sbjct: 364 KVLITTNVLSRGIDVEQVTIVVNFDLPIDMQGKADCDTYLHRIGRTGRFGKQGIAINLVD 423

Query: 350 QNMQRRA-ERLFREANVSVVWEPAPSVEAIRE 380
                     + +  N  + +  A   + I +
Sbjct: 424 SQEAMNICRDIEKHFNRKIHYLNADDSDEIEK 455


>gi|261204203|ref|XP_002629315.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239587100|gb|EEQ69743.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis SLH14081]
 gi|239614347|gb|EEQ91334.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ER-3]
          Length = 804

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 195/424 (45%), Gaps = 39/424 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 368 SGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 427

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +   A  G  V   +GG S+  +   
Sbjct: 428 LPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYS 487

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + +  S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 488 LRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 547

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------------ 216
           +        +P   +     +    +  + +                             
Sbjct: 548 QKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEA 607

Query: 217 -SDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 608 VDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 667

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N EN  HR G
Sbjct: 668 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHRIG 727

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEA-----IRERDAQR 385
           RTGRAG+ G+++  +           +++  ++ +S V E     EA     +R   AQ+
Sbjct: 728 RTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKSAISRVPEELRKHEAAQSKPVRGAGAQK 787

Query: 386 ILQD 389
            +++
Sbjct: 788 KIEE 791


>gi|145530157|ref|XP_001450856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418489|emb|CAK83459.1| unnamed protein product [Paramecium tetraurelia]
          Length = 696

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/511 (20%), Positives = 223/511 (43%), Gaps = 22/511 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++P       AL +R ++ +T +Q  ++   L E+D+L +++TGSGKT+++ L L   
Sbjct: 58  FEDLPISTNTLRALKQRKFIKMTEIQRCVIPHALAERDILGASKTGSGKTLSYLLPLIEN 117

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    ++++P     AL I PTRELA+QV    + L     + +A+ IGG +   ER  +
Sbjct: 118 LYV--NKWTPLDGLGALIILPTRELAMQVFEVFKSLNTYHILSMALLIGGKNYQYERDRI 175

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+      L       G + ++LK +VLDEAD ML+LGF   ++ I++  PK+++
Sbjct: 176 TGMNVIICTPGRLLQHFEESPGFDANNLKVLVLDEADMMLELGFWGPLKAIMNYLPKEKQ 235

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASE------------NRQHSDIDYRAVLVALS 229
            ++FSAT++  I  L K   ++   + +  +                + +    ++  + 
Sbjct: 236 TMLFSATLNQTIHQLCKISLQNPESIFLHEKLATDSNEQTDNVMSTPNKLQQFYIVTPIE 295

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++ + + + ++ H  +  ++F ST   V    +V  +    ++       Q++       
Sbjct: 296 EKIDVLFSFIKSHNKQKIVIFVSTCKQVRYLFEVFRKLKLGMLLYELHGRQKQDKRTAIF 355

Query: 290 MRDGRAR--VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
                 +      T++A+RG+D P ++ VI  +   +P   +HR GRT R    G S+  
Sbjct: 356 FTFSEKKAAALFTTNIASRGLDFPKVDWVIQFDCPDDPSTYVHRVGRTARYIAGGFSMLF 415

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGD-EKKMVD 405
           +  +  +  +++ ++  V +  +   S + +  ++  Q ++ + + L  +        V 
Sbjct: 416 LLPSEVKFIDKV-KQKGVEIKQKFLNSNKQLTIKQTIQSLVSENIELKYLAQRAFISYVR 474

Query: 406 VLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKG 465
            +    D E      ++             P+  V   D    + +  K     +   K 
Sbjct: 475 SVDINADKEIFKLKEIKTDLLAESMGLVQVPILTVQQPDESDQEDKPEKKSKLQKLKEKI 534

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINR 496
                +++   +  E + L   + R SG ++
Sbjct: 535 EIKKQMAIDQNKPIETKKL-KQISRESGFDK 564


>gi|229593065|ref|YP_002875184.1| ATP-dependent RNA helicase DbpA [Pseudomonas fluorescens SBW25]
 gi|229364931|emb|CAY53031.1| ATP-independent RNA helicase [Pseudomonas fluorescens SBW25]
          Length = 461

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/376 (33%), Positives = 199/376 (52%), Gaps = 10/376 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P    +   L   GYV +T +Q   L   L+  D++  A+TGSGKT AFG+ L + 
Sbjct: 8   FNTLPLSAAMLANLDSLGYVEMTQIQAQSLPVILKGLDLIAQAKTGSGKTAAFGIGLLNP 67

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRD 120
           +              AL + PTRELA QV +E+  L   +  + V    GGVS+  +   
Sbjct: 68  INP------RYFGCQALVMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSLGPQIAS 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L++GAH++VGTPGR+  H+R   L +  L  ++LDEAD MLD+GF D IE I+  +P +R
Sbjct: 122 LEHGAHVIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIISKTPPRR 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   +I  LA  +   A +   A        I+ R   ++  +R  A+  +L 
Sbjct: 182 QTLLFSATYPVSIKQLASKF-MRAPQQVKAEAFHSDDQIEQRFYEISPEERMEAVTKVLA 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +    + + FC T+  V      L       V L G+L Q++R   L M  +    V +A
Sbjct: 241 HFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARG+D+  L++VI+ EL+ + E  +HR GRTGRAG  G+++ ++  +   RA+ + 
Sbjct: 301 TDVAARGLDIDSLDMVINVELARDSEIHIHRVGRTGRAGETGIAISLVAPSEAHRAQAIE 360

Query: 361 REANVSVVWEPAPSVE 376
           +     + W+   +++
Sbjct: 361 QLQKSPLNWDQLDNLK 376



 Score = 62.3 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLL 521
            S   ++ G K K     ++  L   +GI    +G I +     FV     ++   +  L
Sbjct: 387 MSTLCIAAGRKDKVRPGDILGALTGEAGIPGAQVGKIAIFDFQAFVAVERGIAKQALQRL 446

Query: 522 RRTVKLDKGIQLKYL 536
                  + ++++ L
Sbjct: 447 NDGKIKGRSLRVRIL 461


>gi|56421010|ref|YP_148328.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
 gi|56380852|dbj|BAD76760.1| ATP-dependent RNA helicase [Geobacillus kaustophilus HTA426]
          Length = 436

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 198/423 (46%), Gaps = 25/423 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    I EA+    +   T +QE I+   LR + ++  +QTG+GKT A+ L +   +  E
Sbjct: 10  SFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIIEKIKPE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG----VSVHRERRDL 121
                      A+  APTRELA Q+  E   +         +            +    L
Sbjct: 70  RAEV------QAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
               HIV+GTPGR+ D IR + L++     +V+DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   V++  +   + +I++  + +   ++   + ++L  
Sbjct: 184 MLVFSATIPEKLKPFLKKYMENPTFVHVDPKRTANQNIEHVLIPLRGREKTKLLRDVLLS 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +    AIVF +TR         LAE   +V  L G+L+ +ER   + ++RD   +  +AT
Sbjct: 244 YNPYLAIVFVNTRKMADEVADRLAEQGLKVGVLHGDLTPRERRKMMNLIRDLEFQYVVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL  + +  +HR+GRT RAG  G++  +   + Q    RL +
Sbjct: 304 DLAARGIDIEGVSHVINYELPDDLQFYIHRAGRTARAGYSGIAATIYEPSDQDAIARLEK 363

Query: 362 EANVSVV--------WEPAPSVEAIRERDAQR------ILQDPLFLDSIQGDEKKMVDVL 407
              +S V        W+  P      +R  ++      +         ++   KK +   
Sbjct: 364 -MGISFVHRDLVRGEWKELPPWNRRSKRAGEKDDELALLFAKLKKTKQVKPGYKKKLRAE 422

Query: 408 LAK 410
           L K
Sbjct: 423 LEK 425


>gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
 gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
          Length = 416

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/380 (28%), Positives = 188/380 (49%), Gaps = 7/380 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     + E L E  Y   T +Q   +   L  +D++  A TGSGKT AF L + 
Sbjct: 8   TTFADLGLIPTLVERLEELEYSQPTPIQSHTIPYLLEGRDLVGGANTGSGKTAAFSLPIL 67

Query: 60  STLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHR 116
             +  ++   S     ++ L + PTRELA QV   ++                GGVS + 
Sbjct: 68  QKICQQDKPNSRRGNTVSHLILVPTRELASQVAYNVKSYSYHLRNEIKTVAVFGGVSANP 127

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L+ G+ IVV TPGRL D +    + +  ++ +VLDEAD ML LGF +++  IL   
Sbjct: 128 QMLALRGGSDIVVATPGRLLDLVSSNAIKLDQVQTLVLDEADRMLSLGFTEELNKILALL 187

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+K++ L+FSAT    +T+LA++   + V V + S          R   V    +   + 
Sbjct: 188 PEKKQTLLFSATFPEKVTSLAQHLLSNPVEVQLQSAETSTL--VQRVFSVNKGQKTAVLA 245

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++++ H  + A++F + + S +   + L++         G+  Q  R+  L+  + G  +
Sbjct: 246 HLIKQHQWRQALIFVNAKNSCNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGDIQ 305

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     
Sbjct: 306 VLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHF 365

Query: 357 ERLFREANVSVVWEPAPSVE 376
           + + ++    +  E     E
Sbjct: 366 KVIEKKNKFRLEREQVAGFE 385


>gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
 gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
          Length = 418

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/378 (29%), Positives = 187/378 (49%), Gaps = 6/378 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYRQPTPIQSHTIPDVLDGKDIVGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRER 118
            +L + +     +    L + PTRELA QV   ++         +      GGVSV+ + 
Sbjct: 69  KILEQEESNRRGNYVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQM 128

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G+ I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL+  PK
Sbjct: 129 LALRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELLPK 188

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT    +TTLA++   D V V + S          R   V    +   + ++
Sbjct: 189 KKQTLLFSATFPDKVTTLAQHLLNDPVEVQLQSAEASTL--VQRVFSVNKGQKTAVLAHL 246

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V 
Sbjct: 247 IKQHKWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQVL 306

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     + 
Sbjct: 307 IATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDFHHFKV 366

Query: 359 LFREANVSVVWEPAPSVE 376
           + ++    +  E     E
Sbjct: 367 IEKKNKFQLEREQVEGFE 384


>gi|300120302|emb|CBK19856.2| unnamed protein product [Blastocystis hominis]
          Length = 563

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/407 (22%), Positives = 162/407 (39%), Gaps = 18/407 (4%)

Query: 3   IFENIP---------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVA 53
            FEN+P         + I + +    Y   T +Q   +   ++ ++ L    TGS KT A
Sbjct: 123 TFENMPFRSDQSKLKETILQNIENSEYKEPTPIQMQSIPIIIQTREFLGIVPTGSVKTAA 182

Query: 54  FGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
           + L +     A            A+ + PT ELA QV R L  L  ++G+   V      
Sbjct: 183 YLLPILQRRNAHGTE-----HIRAVILTPTLELAAQVHRHLLRLGERSGIKSKVLSKSTW 237

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              +         I                L+ + +  +   +         + D E + 
Sbjct: 238 PIFQEGKQSIDCLISTPLRLISAISASIIDLSQAEILVLDEGDKLFEDGFIEQID-EIMA 296

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S  + + L+FSAT+   +  +A+   +D +RV +  +N   SD++           + 
Sbjct: 297 ACSNPRLQRLLFSATLPQGVEAIARTVLRDPIRVIVGHKNTTTSDVEQSLVYCGNEEGKL 356

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            AI N+LR       +VF  ++    +    LA     V  +  +LS   R+ A+   R 
Sbjct: 357 IAIRNLLREGFEPPMLVFVQSKDRARQLYTELAYDRVNVDVIHSDLSNLARTAAINRFRT 416

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V IATD+  RG+D   L  V++ +   +  + +HR GRTGRAGRKG ++    +  
Sbjct: 417 GETWVLIATDLLGRGLDFLGLNTVVNYDFPQSGVDYIHRIGRTGRAGRKGKAITFFTEED 476

Query: 353 QRRAERLFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQ 397
           +     +    N+S    P     ++   +R+ ++I +  +  D I 
Sbjct: 477 KPMLRSIANVMNISGFEVPQWMLQLKKTNKRELKKIAKHGVKRDEIT 523


>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 365

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/353 (30%), Positives = 178/353 (50%), Gaps = 13/353 (3%)

Query: 30  ILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL------AENDRFSPASAPLALAIAPT 83
            +      +D++  AQTGSGKT  F   +  T+L       E       + P  L +APT
Sbjct: 3   SIPIASANRDLMACAQTGSGKTAGFLFPIIITMLRNGGTEPEGGVRGRRTYPECLVLAPT 62

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA Q+  E +     TG+   V  GG  V  + R ++ G  ++V TPGRL D I    
Sbjct: 63  RELASQIQDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCDLLVATPGRLVDLIERGR 122

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR----RMLMFSATISPAITTLAKN 199
           L++ ++K +VLDEAD MLD+GF   I  I++          + +MFSAT    I  LA +
Sbjct: 123 LSMENVKFLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFSATFPANIQRLAGD 182

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           + +D + + +        ++      V  +D+ +A++  L        ++F  T+ +   
Sbjct: 183 FMRDYIFLTVGRVGSASENVVQSVEYVEQNDKLDALMRFLLTIQEGLILIFVETKRNCDF 242

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
              +L E  F   ++ G+ SQ+ER ++L+  + GR  V +ATDVAARG+D+P++  V++ 
Sbjct: 243 VEDILCERGFPACSIHGDKSQREREDSLRAFKTGRCPVLVATDVAARGLDIPNVTQVVNY 302

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVW 369
           +L +N ++ +HR GRTGRAG  G ++  + +      R    L  E+   V  
Sbjct: 303 DLPTNIDDYVHRIGRTGRAGNTGAALSFVNEKNSGVARELRELLEESGQEVPP 355


>gi|240281972|gb|EER45475.1| ATP-dependent RNA helicase HAS1 [Ajellomyces capsulatus H143]
          Length = 542

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 180/369 (48%), Gaps = 9/369 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+     +A+++  +  +T +Q   + P L  +DVL +A+TGSGKT+AF +     L   
Sbjct: 166 NLSDKTMKAIADMKFETMTEIQRRGIPPLLAGRDVLGAAKTGSGKTLAFLIPAVEML--S 223

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             RF P +    + ++PTRELA+Q+      L A       + IGG +   E   L  G 
Sbjct: 224 ALRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAGKLTKGV 283

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           ++++ TPGRL DH++        +LKA+V+DEAD +L++GF D++  I+   P + R  M
Sbjct: 284 NLLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEVGFEDEMRQIIKILPAEDRQTM 343

Query: 185 FSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
             +            ++       + V+   E+     ++   V+     R   + + L+
Sbjct: 344 LFSATQTTKVEDLARISLRQGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLK 403

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            +  K  IVF S+   V    ++L      V+ L G+  QQ+R+N      +      I 
Sbjct: 404 RNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLYGKQKQQKRTNTFFEFCNATQGTLIC 463

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRAERL 359
           TDVAARG+D+P ++ ++  +   +P + +HR GRT R A  KG S+  +  +     + L
Sbjct: 464 TDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGANGKGRSLMFLQPSEVGFLKHL 523

Query: 360 FREANVSVV 368
            +EA V VV
Sbjct: 524 -KEARVPVV 531


>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
 gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
          Length = 813

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 212/465 (45%), Gaps = 26/465 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +  
Sbjct: 297 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILE 356

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 357 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 413

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF +++  IL + PK 
Sbjct: 414 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 473

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      VR+ + S+ +    +              R   ++
Sbjct: 474 RQTMLFSATMTSSVDKLIRLGLNKPVRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 533

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       IVF   +    R   +      +   L G +SQ++R  +++  RD +  
Sbjct: 534 FLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKVS 593

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 594 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK-- 651

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
                     VV E   +  A   +   R+++  +   + + +     ++ +VL  + + 
Sbjct: 652 ----------VVKEAVKAGRAQGAKIVSRVIEPAVADKWAEQVNDLATEVEEVLQEEKEE 701

Query: 414 EKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +++A   +++ R    +   EEI      +  +  ++   + K G
Sbjct: 702 KQLAQAEMQVTRGKNLIDHQEEIMSRPKRTWFESEKEKRESKKRG 746


>gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
 gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
          Length = 416

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/379 (29%), Positives = 192/379 (50%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L E  Y   T +Q   +   L  +D++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLLPTLVERLEELEYSQPTPIQSYAIPHVLDGRDIVGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
            +L ++   +     ++ L + PTRELA QV   ++                GGVSV+ +
Sbjct: 69  KILQQDASDNRRGNYVSHLILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G+ IVV TPGRL D +    + +  +K +VLDEAD ML LGF D++  IL+  P
Sbjct: 129 MLALRGGSDIVVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILELLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTLA++  ++ V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQHLLREPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L+  + G  +V
Sbjct: 247 LIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLEGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    +  E     E
Sbjct: 367 VIEKKNKFQLEREQVAGFE 385


>gi|239930667|ref|ZP_04687620.1| DEAD-box RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439029|ref|ZP_06578419.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341924|gb|EFE68880.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 496

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +
Sbjct: 70  SFADLDMPTELLAALGSQGVTAPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLA 129

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                  + + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   
Sbjct: 130 R---TAGQRAEAGQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPISRQAGA 186

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + 
Sbjct: 187 LRRGAEIVVATPGRLKDLIERGDCRLDQVVVTVLDEADQMADMGFMPQVTALLDQVRPQG 246

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+         
Sbjct: 247 QRMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAAAVTTMEHHVLHVHGADKHA--AITEI 304

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +V R T+ L +   +  +L G  SQ +R+  L   ++G   V +A
Sbjct: 305 AARDGRVIMFLDTKHAVDRLTEHLLKSGVRAASLHGGKSQPQRTRTLTQFKNGHVNVLVA 364

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL 
Sbjct: 365 TNVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRAMTRLM 424

Query: 361 REANV 365
             A +
Sbjct: 425 ALAGI 429


>gi|1438969|gb|AAB04136.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 23/373 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + 
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + L+ +N+  +       P  + + PTRELA Q+  E      +T + +    GG++V  
Sbjct: 401 TRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGY 460

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDS 175
            +  ++ GA I+VGT GR+        + +   +  VLDEAD M+D      DIE I++ 
Sbjct: 461 NKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNY 520

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSD 230
               R+    +   S       +   +  +R N            +  +         S+
Sbjct: 521 DSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSE 580

Query: 231 RDN------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           + +                       K  +VF S RA       +L+      + + G  
Sbjct: 581 KKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAR 640

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR 
Sbjct: 641 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 700

Query: 339 GRKGMSVFVIPQN 351
           G  G +   I ++
Sbjct: 701 GNSGRATSFISED 713


>gi|17507877|ref|NP_491963.1| Germ-Line Helicase family member (glh-1) [Caenorhabditis elegans]
 gi|51338772|sp|P34689|GLH1_CAEEL RecName: Full=ATP-dependent RNA helicase glh-1; AltName:
           Full=Germline helicase 1
 gi|14625283|gb|AAB52901.2| Germ line helicase protein 1, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 763

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 23/373 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + 
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + L+ +N+  +       P  + + PTRELA Q+  E      +T + +    GG++V  
Sbjct: 401 TRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGY 460

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDS 175
            +  ++ GA I+VGT GR+        + +   +  VLDEAD M+D      DIE I++ 
Sbjct: 461 NKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNY 520

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSD 230
               R+    +   S       +   +  +R N            +  +         S+
Sbjct: 521 DSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSE 580

Query: 231 RDN------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           + +                       K  +VF S RA       +L+      + + G  
Sbjct: 581 KKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAITIHGAR 640

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR 
Sbjct: 641 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 700

Query: 339 GRKGMSVFVIPQN 351
           G  G +   I ++
Sbjct: 701 GNSGRATSFISED 713


>gi|71423512|ref|XP_812486.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70877271|gb|EAN90635.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 948

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/503 (22%), Positives = 199/503 (39%), Gaps = 34/503 (6%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +    +P  + + L+  G+    +VQ       +  +D+L++A+TGSGKT+A+ L L
Sbjct: 305 MRTWNGSGLPDSVLDLLAREGFEQPFAVQSLGSPALMSGRDLLITAKTGSGKTLAYLLPL 364

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               + +         P+ L   PTRELA Q+ +  E L     +      G   +    
Sbjct: 365 IRHCVGQEP-CGKGEGPIGLIFVPTRELAAQIAQLAEKLCVAAKLRFVSSYGLTPLADNI 423

Query: 119 RDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R  + G  ++V TPGRL D      G  +++     VV+DEAD M D GF + +E  L +
Sbjct: 424 RHCRAGCEVMVCTPGRLLDLLTVNGGAVISLRRTSFVVIDEADRMFDSGFMEHVEAFLKN 483

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD----- 230
               R++ + SAT+   +  +   + +D V V +  +    S+++ R             
Sbjct: 484 IRPDRQLALISATMPKELKKVIIRHMQDPVEVTVGGKPTPASNVEQRFFFFDEEVYEVEE 543

Query: 231 ----------RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKV--LAEHLFQVVALSGEL 278
                     +   I++     G    I+F   +              +  ++  L   +
Sbjct: 544 ANRTEDKKFLKLLQILSDEGGTGQHLIIIFAQRKEECDELFARLSACGYQKRIAVLYSGM 603

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
              +R  AL+    G   + IAT VA RG+D+P LELVI+  L  + E  +HR GRTGRA
Sbjct: 604 DPLDREFALEHFAPGNQFILIATGVAERGLDIPYLELVINYTLPDHYEAYVHRIGRTGRA 663

Query: 339 GRKGMSVFVI----PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP--LF 392
           G+KG +V         ++          A   V  E       +RE+  + I++     +
Sbjct: 664 GKKGKAVSFFMRGKDDDLSVELCEGLERAQQQVPEELYERAAKLREKRKEGIVRHNTGFY 723

Query: 393 LDSIQGDEKKMVDVLLAK-HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR---- 447
              ++  + +  D    +       AAG      A  C   +++        D       
Sbjct: 724 RGYMKAKKLRFTDRGQEEQFKAAARAAGLEEYLSASSCTDSDLSDGDEDGKEDGIEIVAV 783

Query: 448 DDSRAFKVGGGSRDNFKGSSWFS 470
            +      GG + ++      + 
Sbjct: 784 QEDGTRGGGGRNEEDSTALMLYR 806


>gi|313500956|gb|ADR62322.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida BIRD-1]
          Length = 592

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 202/440 (45%), Gaps = 7/440 (1%)

Query: 34  DLREKDVLVSAQTGSGKTVAFGLALASTL----LAENDRFSPASAPLALAIAPTRELAVQ 89
            L+ +D++V+AQTG+GKT  F L +   L      +  +      P  L + PTRELA Q
Sbjct: 1   MLQGRDLMVAAQTGTGKTGGFALPILERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQ 60

Query: 90  VGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHL 149
           V    +       +V A   GGV ++ + + +  G  ++V  PGRL D      ++++H+
Sbjct: 61  VHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV 120

Query: 150 KAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           + +VLDEAD MLD+GF  D++ +L   P KR+ L+FSAT S  IT LA    ++  R+ +
Sbjct: 121 EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLQNPERIEV 180

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
              N     I+ R   +  S +   + +++     +  +VF  T+   +R  + L +   
Sbjct: 181 TPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGL 240

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
              A+ G  SQ  R+ AL   +    RV +ATD+AARG+D+  L  V++ EL +  E+ +
Sbjct: 241 TAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYV 300

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           HR GRTGRAGR G ++ ++  + ++  + + R     +        +A  + +A++    
Sbjct: 301 HRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDA-SQVEAEKPEAR 359

Query: 390 PLFLDSIQGDEKKMVDVLLAKHD--PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR 447
               ++ +G   +       K      K         R    A  +    S    + R  
Sbjct: 360 ERPQNNGRGGRNQQARGEGGKDSNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKP 419

Query: 448 DDSRAFKVGGGSRDNFKGSS 467
            D +       S    K  +
Sbjct: 420 RDKKPRPQQASSNSVPKPPA 439


>gi|300708304|ref|XP_002996334.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
 gi|239605627|gb|EEQ82663.1| hypothetical protein NCER_100594 [Nosema ceranae BRL01]
          Length = 403

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 187/392 (47%), Gaps = 16/392 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  I + I + L +   + +T +Q   +   L   D+L  + TG+GKT +F + +   
Sbjct: 3   FEDQKIDKQIVKILKDNNIIYMTPIQHKTVPLILNGHDILGISSTGTGKTFSFLVPILHN 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL  N  F        L I PTRELA+Q+ + ++  +   GV     IGG  +  +   L
Sbjct: 63  LLNTNKSF------YCLIITPTRELALQIDKTVKL-FKSLGVKSLALIGGEKIEDQLNQL 115

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIV+GTPGRL    +   +N   +  +   +     D  F +++ FIL++  KKR+
Sbjct: 116 KTHPHIVIGTPGRLHKIGKNLKINRFRVLVLDEADKYFEDD--FIEEMAFILENLRKKRQ 173

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+F+ATI+  +   +        +    S N +   +D     VA   ++  + ++L+ 
Sbjct: 174 TLLFTATITNNLKQKSLEI-LKNFKEIDLSTNVKVEKLDEFYFFVARKYKECFLYSLLKN 232

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F + + +    + ++      V  L+G+  QQ R   +      +  V I T
Sbjct: 233 KQDLKIIIFVNMKITTLILSSLMKSFGIDVETLNGDQDQQARIEIIDGFIKNKYNVLITT 292

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF- 360
           DV +RG+D+ D++ VI+ +L  N ++ +HR GRT RAG+KG+++ ++ Q      +++  
Sbjct: 293 DVGSRGLDVCDVDFVINYDLPQNNKDYVHRVGRTARAGKKGVALTLVTQYDVSIFQKIEY 352

Query: 361 ---REANVSVVWEPAPSVEAIRERDAQRILQD 389
              R+ N+    E     E I +    ++ ++
Sbjct: 353 FLNRKLNLFTFNENYHQFEEIIDTKLLKVKEE 384


>gi|163942044|ref|YP_001646928.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
           weihenstephanensis KBAB4]
 gi|229013506|ref|ZP_04170641.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
 gi|229061981|ref|ZP_04199307.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|229135112|ref|ZP_04263914.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|229169035|ref|ZP_04296751.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|163864241|gb|ABY45300.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
           KBAB4]
 gi|228614444|gb|EEK71553.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH621]
 gi|228648341|gb|EEL04374.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST196]
 gi|228717290|gb|EEL68963.1| ATP-dependent RNA helicase yqfR [Bacillus cereus AH603]
 gi|228747787|gb|EEL97655.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 184/374 (49%), Gaps = 12/374 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   +    + +A+ E  +   T +Q+ I     +   ++  +QTGSGKT A+ L  
Sbjct: 3   LQTFTQYDFKPFLIDAVRELRFTEPTGIQKKIFPVVKKGVSIIGQSQTGSGKTHAYLLPT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            + + A  +          +  APTRELA Q+  E+    ++      +     IGG   
Sbjct: 63  LNRIDASREEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDK 116

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R    L+   HIVVGTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I  
Sbjct: 117 QRSIEKLKKQPHIVVGTPGRIKDLVEEKALFVYKADTIIVDEADLMLDMGFIQDVDKIAA 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  +ML+FSATI   +    K Y ++   ++I  +     +ID+  V     ++   
Sbjct: 177 RMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIDHYLVPSRHRNKTEL 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L       AIVF +T+         LAE   +V  + G+LS ++R   ++ +RD  
Sbjct: 237 VKNMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRRKMMKQVRDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATD+AARGID+  +  VI+ EL  + +  +HR GRT RAG  G++V +     + 
Sbjct: 297 FQYIVATDLAARGIDIEGISHVINYELPPDLDFFVHRVGRTARAGHSGIAVTIYDPANEE 356

Query: 355 RAERLFREANVSVV 368
             + L ++ ++   
Sbjct: 357 ALDSLEKQRHIEFK 370


>gi|326433402|gb|EGD78972.1| hypothetical protein PTSG_01945 [Salpingoeca sp. ATCC 50818]
          Length = 845

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 174/385 (45%), Gaps = 9/385 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
            K+F   P      + L++ G++  T +Q+A L   L  +DVL +A+TGSGKT+AF + +
Sbjct: 54  FKLFTEFPISNRTKKGLADAGFIKPTRIQKATLKHALAGRDVLGAAKTGSGKTLAFLIPV 113

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    +RFS      A+ ++PTRELA Q    L  +     +  A+ IGG +V  E+
Sbjct: 114 LEKL--NRERFSRDLGIGAVVVSPTRELAQQTYNTLVQVATGHEMSCALFIGGNNVKIEK 171

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   I+      +            +L+ +VLDEAD +LD GF+++++ I+   P 
Sbjct: 172 TMAATRNIIICTPGRLVQHMDETPNFGFDNLQVLVLDEADRLLDSGFKEEVDRIVSEMPP 231

Query: 179 KRRMLMFSATIS-PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ L+FSAT +         +            +    + +    V V L ++ N + +
Sbjct: 232 HRQTLLFSATQTAEVDELARLSLHNPVFINVHKDQAATPARLKQCYVEVPLHEKINLLYS 291

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS--GELSQQERSNALQMMRDGRA 295
            +  H     +VF + R  V+   K+       V      G  S   R   L+     +A
Sbjct: 292 FIESHKKHKTMVFLACRKQVNLLYKIFCRRKPGVSIFELVGRRSLHTRQETLRKFSKAKA 351

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V + TDVAARG+D+P++  V+  +   + +  +HR GRT R G+ G ++  +  +    
Sbjct: 352 AVLLTTDVAARGLDIPNVNWVLQVDCPESVDTYIHRVGRTARFGKNGNAMLFLLPSELNM 411

Query: 356 AERLFREANVSVVWEPAPSVEAIRE 380
            ++L     V +  +   S  A+R 
Sbjct: 412 VKQLEGR-KVPIARKEI-SARAVRS 434


>gi|239818170|ref|YP_002947080.1| ATP-dependent RNA helicase DbpA [Variovorax paradoxus S110]
 gi|239804747|gb|ACS21814.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 476

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 209/405 (51%), Gaps = 16/405 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L++ GY  +T++Q A L P L  KD++  A+TGSGKT AF LAL S L    
Sbjct: 22  LSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLIAQAKTGSGKTAAFALALLSNLNP-- 79

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  A+ + PTRELA QV  E+  L   +  + V    GGV++  +   L++GA
Sbjct: 80  ----RRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRGQIASLEHGA 135

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ DH+  + LN+  L  +VLDEAD MLD+GF DDI  +    PK+R+ L+F
Sbjct: 136 HIVVGTPGRIMDHLERENLNLEALNTLVLDEADRMLDMGFFDDIVKVARQCPKERQTLLF 195

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I  LA+ + K+  ++ + +++           +     R +A+  +L +    
Sbjct: 196 SATYPEGIAKLAQQFMKNPEQITVQAQHEGSKIRQRWYQVKESE-RLHAVSLLLDHFRPV 254

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+       +VL    F  +AL GEL Q+ER   L    +    V +ATDVAA
Sbjct: 255 STLAFCNTKQQCRDLVEVLQGQGFSALALFGELEQRERDQVLVQFANRSCSVLVATDVAA 314

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR----KGMSVFVIPQNMQRRAERLFR 361
           RG+D+  LE VI+ +++ + E  +HR GRTGR G+    +G+++ +   +      ++ +
Sbjct: 315 RGLDIAQLEAVINVDVTPDAEIHIHRIGRTGRVGQQGGAEGLALNLASMDEMGSVGKIEQ 374

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                  W P   +   +       L  P+    I G  K+ +  
Sbjct: 375 LQGRESEWHPLAELTPAQGA----PLAPPMATLQIVGGRKEKIRA 415



 Score = 50.7 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
           A  L ++ A +     +  +  + GR+             G+       +   +  G K+
Sbjct: 353 AEGLALNLASMDEMGSVGKIEQLQGRESEWHPLAELTPAQGAPLA-PPMATLQIVGGRKE 411

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRRTVKLDKGIQL 533
           K  A  ++  L    G  +  +G I V    T+V     ++A+    L       K +++
Sbjct: 412 KIRAGDVLGALTGDCGYAKDQVGKINVNEFSTYVAVERGIAAEAARKLSSGRVKGKSVKV 471

Query: 534 KYL 536
           + L
Sbjct: 472 RLL 474


>gi|141795456|gb|AAI39522.1| LOC562123 protein [Danio rerio]
          Length = 584

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 201/409 (49%), Gaps = 12/409 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P V+ + L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L ++
Sbjct: 177 FPTVLEKNLKVAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QS 235

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SP S P  L + PTRELA+Q+  + +  +     +  A+ +GG+ +  +   L++  
Sbjct: 236 ESASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNI 294

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ 
Sbjct: 295 KIVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLT 354

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242
           SATI      LA+    D V + I  +N+  +++          +   +   I+N  + +
Sbjct: 355 SATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLY 414

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +       +      V        VA+  +  Q ER+  ++ + +G+  V I+T 
Sbjct: 415 QPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTG 474

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++  +  N +R    + + 
Sbjct: 475 ILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKR 534

Query: 363 ANVSVVWEPA-----PSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVD 405
              +    P      P +   + RD Q+  Q     L  IQ  +K+   
Sbjct: 535 VKPTGSILPPQILNSPHLHEQQRRDKQKNTQHTHSILHLIQQHDKRSAR 583


>gi|73996616|ref|XP_534818.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           isoform 1 [Canis familiaris]
          Length = 801

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 173/380 (45%), Gaps = 14/380 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I E + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L   +  
Sbjct: 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER--- 118
           L + DR   +   P A+ +APTRELA Q+  E        G+     +            
Sbjct: 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAIVIATPGRLIDVLE 515

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS-- 176
                 +             I              +  +++  D    +D E +L +   
Sbjct: 516 NRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFES 575

Query: 177 --PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
              K R+ +MF+AT+ PA+  LA++Y +    V I S  + H  ++ +  L++ S++   
Sbjct: 576 GKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKK 635

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ IL        I+F + +       K L +  +    L G   Q++R  AL  ++ G 
Sbjct: 636 LLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGA 695

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVA RGID+ D+ +V++ +++ N E+ +HR GRTGRAG+ G+++  + +    
Sbjct: 696 KDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDS- 754

Query: 355 RAERLFREANVSVVWEPAPS 374
               +F E   +++  P  S
Sbjct: 755 ---AVFYELKQAILESPVSS 771


>gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
          Length = 416

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 187/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  +D++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
            +L + +        ++ L + PTRELA QV   ++         +      GGVSV+ +
Sbjct: 69  KILQQGESNDRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTLA++   D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPEKVTTLAQHLLNDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKKHQWRQILIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    +  E     E
Sbjct: 367 VIEKKNKFQLEREQVEGFE 385


>gi|296201956|ref|XP_002748362.1| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Callithrix
           jacchus]
          Length = 575

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 160/417 (38%), Gaps = 29/417 (6%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AFG+
Sbjct: 162 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFGI 221

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L     + +      AL I+PTRELA Q+ REL  +   TG  + +    V   +
Sbjct: 222 PILMQL-----KQTANKGFRALIISPTRELASQIHRELVKISEGTGFRIHMIHKAVVAAK 276

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 277 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 336

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 337 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 396

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 397 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 456

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG ++   
Sbjct: 457 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFF 516

Query: 349 PQNMQRRAER----------LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            ++ +               L RE+  +         +  R++   +  +  + L+ 
Sbjct: 517 TEDDKPLLRSKQKKKMIKKPLERESISTTPKCFLEKAKDKRKKVTGQNSKKKVALED 573


>gi|116494326|ref|YP_806060.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104476|gb|ABJ69618.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
          Length = 448

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/451 (23%), Positives = 197/451 (43%), Gaps = 14/451 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   + + L+       T +Q+ ++   LR ++++  +QTGSGKT AF + L S
Sbjct: 5   FKQFQ-LKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLS 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            +    D      A   +  AP+RELA Q+    +          +  +  G     +  
Sbjct: 64  MVDPTED------ATQVVITAPSRELANQIYAVAQQLIQTEPVIRINRLVGGMDKQKQID 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +   +  H+ +GTPGR+ D I+   L  S ++  V+DEAD  LD+GF + ++ I  S P 
Sbjct: 118 KLQNHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +M +FSATI   +    + Y  +   + +  ++     ++   +     D++  I  +
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  
Sbjct: 238 VTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYV 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  + +VI+AE+  + E  +HR GRTGR G  G +V +     + +   
Sbjct: 298 VATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAE 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L     +    +   + E +    R R   R  +      +I+G  KK     +  +  +
Sbjct: 358 LE-HMGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
              A  L   R    A  +         R R
Sbjct: 417 IRTAVLLERKRNTKIARRQALLAEKRKNRKR 447


>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
          Length = 1198

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/458 (26%), Positives = 206/458 (44%), Gaps = 27/458 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ ++GY   T +Q   +   L  KDV+  A+TGSGKT AF + L   L +  
Sbjct: 264 LSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTAAFLVPLLEKLQSH- 322

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
               P +   AL ++PTRELA+Q  +    L + T +   + +GG S+ ++   +     
Sbjct: 323 ---VPGTGCRALILSPTRELAMQTHKFCNDLSSFTNLRTRLIVGGESLEQQFAAMHENPD 379

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IV+ TPGR    +    L +  ++ VV DEAD + ++GF + +  +L   P+ R+  +FS
Sbjct: 380 IVIATPGRFLHVVMEMNLRLQAVQYVVFDEADRLFEMGFAEQLSELLARLPEGRQTCLFS 439

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHG 243
           AT+   +   A+   +D V V +  + +   ++     +V   ++      ++  L    
Sbjct: 440 ATLPRMLVDFARAGLQDPVLVRLDVDTKISENLSLAHFIVRKDEKIGALIHVLTNLINTT 499

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            + +IVF +TR  V   + +L      V ++ G + Q  R   L   R  +A V + TDV
Sbjct: 500 TEQSIVFVATRHHVEFISLILTSFGLSVASIYGSMDQAARKINLAKFRLNKASVMVVTDV 559

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L  VI+ +  + P+  +HR GR  RAGR G++  ++  +       L    
Sbjct: 560 AARGIDIPLLNNVINYDFPAKPKLFIHRVGRAARAGRTGVAYSLVQPDELPYVLDLHLFL 619

Query: 364 NVSVVWEPAPSVEAIRERDA--------QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                    P V +  ER          Q+IL      +++ G    ++     +   +K
Sbjct: 620 GR-------PLVLSTGERRTVSGATPSGQKILPGISPDETVLGSIPNVLLADAVEESKQK 672

Query: 416 IAAGF-----LRIHRAGLCAPEEITPVSLVSGRDRFRD 448
           IAA F     +R+         +  P+       R +D
Sbjct: 673 IAASFDIQSLVRVVTNAYQLYSKSRPLPAAESVGRAKD 710


>gi|81294184|gb|AAI08030.1| Ddx52 protein [Danio rerio]
          Length = 588

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 152/385 (39%), Gaps = 22/385 (5%)

Query: 1   MKIFE------NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +  FE      ++   I   +   G+   T +Q   +   + ++++L  A TGSGKT+AF
Sbjct: 162 VTTFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHKREILACAPTGSGKTMAF 221

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L L + L     R        AL I+PTRELA Q  REL  L    G  V +   GV  
Sbjct: 222 CLPLLAHL-----RQPLNKGFRALIISPTRELATQTHRELLKLSEGVGFRVHMINKGVEA 276

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
            ++          ++ T      ++  +     +L +V     DE              +
Sbjct: 277 VKKYGPKSAKKFDILVTTPNRLIYLLNQDPPAINLSSVEWLVVDESDKLFEDGKTGFREQ 336

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
               F+  SSP  RR+L  +   +        N          A  +   +       + 
Sbjct: 337 LATIFLACSSPNVRRVLFSATFATDVERWCKLNLDNLVSVSIGARNSAAETVEQQLLFVG 396

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
           + + +  A+ N+++       +VF  +          L      V  +  + +QQ+R N 
Sbjct: 397 SENGKILAMRNLIKQGFLPPVLVFVQSIDRARELYHELVYEGINVDVIHADRTQQQRDNV 456

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           +   R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V 
Sbjct: 457 VSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVT 516

Query: 347 VIPQNMQ---RRAERLFREANVSVV 368
              ++ +   R    + ++A   V 
Sbjct: 517 FFTEDDKPLLRSIATVIKKAGCPVP 541


>gi|82915217|ref|XP_729012.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23485792|gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
          Length = 654

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 185/389 (47%), Gaps = 27/389 (6%)

Query: 6   NIPQVIGEALSERGY-------------VNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           +IP  I +   +  +                T +Q   L   L  +D++  A TGSGKT+
Sbjct: 199 DIPPPI-KNFKDMKFPKAILKGLKKKKINKPTQIQMQGLPSILLGRDIIGIAFTGSGKTI 257

Query: 53  AFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVV 104
            F L L  T L    R        PL L I P+RELA Q    +++            + 
Sbjct: 258 VFVLPLIMTCLEAELRCPIEEGEGPLGLIICPSRELASQTHNIIKYFCEYLYKDKFPMLK 317

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
               IGGVS + +  +++ G H++V TPGRL D +  K + +   + +  DEAD ++DLG
Sbjct: 318 SLCVIGGVSTYEQGNEIKKGVHMLVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLG 377

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           F ++I   LD+   +R+ L+FSAT+   I   AK+   + + +N+      + D+     
Sbjct: 378 FEEEIRNTLDNFSSQRQTLLFSATMPRKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVE 437

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V    + + ++ +L+  G    ++FC  +  V    + L       +A+ G L Q ER 
Sbjct: 438 YVKEEFKLSYLLQVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERL 496

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+ + R+G   V + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++
Sbjct: 497 EAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIA 556

Query: 345 VFVIPQNMQR----RAERLFREANVSVVW 369
              I +N +       + L  EA   +  
Sbjct: 557 TTFINKNQEEAILLDLKALLIEAKQKIPP 585


>gi|328859802|gb|EGG08910.1| hypothetical protein MELLADRAFT_34708 [Melampsora larici-populina
           98AG31]
          Length = 765

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/414 (25%), Positives = 185/414 (44%), Gaps = 39/414 (9%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ ++   IP  I E + E GY   + +Q   +   L  +D++  A+TGSGKT +F + +
Sbjct: 307 MRSWDESKIPMQILEIIDEVGYKEPSPIQRQAIPLGLNNRDLIGIAETGSGKTASFVIPM 366

Query: 59  ASTL--LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +  LA     +    P AL +APTRELA Q+  E      + G      +GG ++  
Sbjct: 367 LTYIGKLAPLTDENRHLGPYALILAPTRELAQQIESETNKFALRLGYRCVSIVGGKAMEE 426

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  ++++GA I++ TPGRL D I    L +     VV+DEAD M++LGF + + FILD  
Sbjct: 427 QALNMRDGAEIIIATPGRLKDCIERHVLVLGQCTYVVMDEADRMINLGFEEVVNFILDQL 486

Query: 177 P-----------------------------------KKRRMLMFSATISPAITTLAKNYQ 201
           P                                    ++ ++  +           K  +
Sbjct: 487 PLSNLKPDTEEAEDSAKMTSFIGGIEGFDVSGIKGLYRQTVMFSATMPPAVERLARKYLR 546

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           + AV     +     +       L     +   ++ +L        IVF + + +  +  
Sbjct: 547 RPAVVTIGVAGQAVDTVDQQVEFLPNEDKKRGRLLEVLNQGHTPPIIVFVNQKKTADQLA 606

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
           K ++   +    L    +Q++R  AL  +R G + + +ATD+A RGID+P++ LV++ ++
Sbjct: 607 KDISRAGWSTTTLHSGKNQEQREAALASLRAGESDILVATDLAGRGIDVPNVSLVVNFQM 666

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           +   E  +HR GRTGRAG+ G ++  +  +       L +E   S V    P +
Sbjct: 667 AGTIEAYVHRIGRTGRAGKVGTAITFLTNDDADVLYDLKQEITKSPVSRCPPEL 720


>gi|308181071|ref|YP_003925199.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046562|gb|ADN99105.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 447

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 209/467 (44%), Gaps = 29/467 (6%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      + +AL++  +   T+VQE ++      + V+  + TGSGKT  F L + +
Sbjct: 4   SFEDFKLQPFLMQALTDINFRKPTAVQEKLIPVIAAGRSVIGQSATGSGKTHTFLLPMIN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVHRE 117
            L A+           A+   P+RELA Q+    + L   +     +     G     + 
Sbjct: 64  QLNADE------RYVQAVITTPSRELAYQIQTAAKQLIQHSPKAIHIGLYVGGTDKQEQI 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +  ++   +++GTPGR+ D +R + L++     +V+DEAD  LDLGF + ++ I    P
Sbjct: 118 EKLNRHQPQLIIGTPGRILDLMRSQALDVHRATQLVVDEADMTLDLGFLNVVDQIAGRMP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
              +ML+FSAT+   +T   + Y  + V   I  E+     ID   +     D+++ I  
Sbjct: 178 ADLQMLVFSATMPQKLTPFLRKYMNNPVMEEIPVESVISPTIDNWLISTKSHDKNSIIYR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        ++F +T+  V   T  L +    +  + G++  +ER   ++ ++  + + 
Sbjct: 238 LLTIGEPYLVLIFANTKERVQELTHYLRQQGLTIAMIHGDIQPRERKRVMRDVQQLKYQF 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +          
Sbjct: 298 VVATDLAARGIDIEGVSHVINDDIPNDLEFFIHRVGRTGRNGMAGTAITLYSPGE----- 352

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
               EA VS       +VEA+  +   + ++D   +DS   + +        K DP  I 
Sbjct: 353 ----EAKVS-------AVEAMGIKFKPKAIRDGEIVDSYDRNRRAKRGPKQEKLDPTLI- 400

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            G+++  +  +    +      +S + R              R + K
Sbjct: 401 -GYVKKSKKKIKPGYKRRIRKKISDKARMDRRIEQRAAARKERKDRK 446


>gi|257866121|ref|ZP_05645774.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257872451|ref|ZP_05652104.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257875753|ref|ZP_05655406.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
 gi|257800055|gb|EEV29107.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC30]
 gi|257806615|gb|EEV35437.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC10]
 gi|257809919|gb|EEV38739.1| DEAD-box ATP dependent DNA helicase [Enterococcus casseliflavus
           EC20]
          Length = 448

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/469 (24%), Positives = 204/469 (43%), Gaps = 27/469 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      I EAL+++ +   T VQE ++    + + V+  +QTGSGKT  F L L  
Sbjct: 2   SFESFKFQPFIYEALADKKFSKPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLMD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            + AE D          +  AP+RELA Q+    + +       + V           + 
Sbjct: 62  KIDAEKDEV------QVVITAPSRELATQIYHAAKQIGGFHDPEIRVSNFVGGTDKQRQL 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R      H+V+GTPGR+ D I  + L +      V+DEAD  LD+GF ++++ I    P
Sbjct: 116 SRLQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y  + +   I S+      I+   +     + +  I  
Sbjct: 176 EKLQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T++ V   T  L E   +V  + G++S +ER   ++ +++   + 
Sbjct: 236 LLTTGHPYLAIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+ ++ +  +HR GRTGR    G ++ +   + +   +
Sbjct: 296 VVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAIQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +  +  V    +   + E +   D  R               ++  +    + DP  I 
Sbjct: 356 AIE-DLGVVFQPKEIKNGEIVATYDRNR---------------RQKREKSRDELDPTLIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
               +  +      ++I        +++ + + R              S
Sbjct: 400 LVKKKKKKIKPGYKKKIQWAVDKKNKEKRKIERRQTTRTARKNKKNSNS 448


>gi|313247629|emb|CBY15795.1| unnamed protein product [Oikopleura dioica]
          Length = 595

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/378 (29%), Positives = 177/378 (46%), Gaps = 12/378 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N P  I + + +  +   T++Q       L   +++  ++TGSGKT+AF L     
Sbjct: 108 FEECNFPSYILKCIQKCKFTEPTAIQSIGFPIGLSGLNMVGISRTGSGKTLAFLLPSMLH 167

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           + A+         P+A+ + PTRELA QV +  +     + +      GG     + RDL
Sbjct: 168 IRAQEP-IRRGDGPIAVVLLPTRELAQQVEQVSKDFVESSDIYTTCVFGGAPKGPQIRDL 226

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I+D     R+
Sbjct: 227 EKGCEIVIATPGRLLDFLEAGKTNLKRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 286

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDRDNAIV 236
           +LM+SAT    +  LA ++  D            S N++   I          ++   ++
Sbjct: 287 LLMYSATWLKEVQALADDFLGDNYIHATIGSTKLSCNKRILQIVDICDQYEKDEKLMKLI 346

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           + L        IVF  T+      T  +    ++  A+ G+ SQ ER + L+  R GR  
Sbjct: 347 SHLMEERESKTIVFTETKRRADELTYKMKRLRWEAAAIHGDKSQSERDHVLKRFRSGRIP 406

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNMQRR 355
           + IATDVA+RG+D+ D++ V++ +     E+ +HR GRT R    KG S     Q   + 
Sbjct: 407 ILIATDVASRGLDINDVKFVVNFDFPGQIEDYVHRIGRTARGKDAKGTSYTFFTQGDGKH 466

Query: 356 AE---RLFREANVSVVWE 370
           A     L ++A+  +  +
Sbjct: 467 AAGLVTLLKDADQRIPEK 484


>gi|312217179|emb|CBX97128.1| similar to pre-mRNA-splicing ATP-dependent RNA helicase prp28
           [Leptosphaeria maculans]
          Length = 815

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/408 (25%), Positives = 180/408 (44%), Gaps = 27/408 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P  +   + + GY   +++Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 399 SGLPDKLMRIVEQVGYTEPSAIQRAAIPIALQCRDLIGVAVTGSGKTAAFILPLLVYISQ 458

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  +    P AL +APTRELA Q+  E     A  G   AV +GG S+  +   +Q
Sbjct: 459 LPPLSAANRHDGPYALVLAPTRELAQQIEVEARKFAAPLGFNTAVIVGGHSIEEQSFQMQ 518

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA I++ TPGRL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P     
Sbjct: 519 AGAEIIIATPGRLVDCIERRVLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVNNEK 578

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---------------------- 220
                             Q       + +   + +                         
Sbjct: 579 PDSELAEDANAMKRGFYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQR 638

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +      +      +         IVF + + +     + +    F  V L G  +Q
Sbjct: 639 VEHIQGEERRKKRLQEILSSEEFRPPIIVFVNIKRNCDAIARDIKHMGFSAVTLHGSKTQ 698

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL  +++GR  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 699 EQREAALASLKEGRTDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGK 758

Query: 341 KGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQR 385
            G+++              +++  ++ +S V E     EA +++  +R
Sbjct: 759 SGVAITFWGNEDADVLYDLKQMLMKSQISKVPEDLRKHEAAQQKGKKR 806


>gi|256786437|ref|ZP_05524868.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289770328|ref|ZP_06529706.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
 gi|289700527|gb|EFD67956.1| ATP-dependent RNA helicase [Streptomyces lividans TK24]
          Length = 728

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 221/486 (45%), Gaps = 41/486 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 50  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 109

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 110 TL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 166

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 167 LERGVDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGG 226

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL   Y KD     + +     + + +  ++V    +D A V    
Sbjct: 227 QRMLFSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV--KPKDKAPVTAAI 284

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 285 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 344

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 345 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLM 404

Query: 361 REANVSVVWEPA-------PSVEAIR--------------------ERDAQRILQDPLFL 393
            +A V              P V  I                     ER+  ++ ++    
Sbjct: 405 EDAGVDATRHIIQGGAAFDPEVAEITGARSMTEVQAESAGNAAQQAEREVGQLTKELERA 464

Query: 394 DSIQGDEKKMVDVLLAK------HDPEKIAAG-FLRIHRAGLCAPEEITPVSLVSGRDRF 446
                + ++  D L+A+       DPE + A     +    +  PE+     +       
Sbjct: 465 QRRANELREEADRLVARVARERGEDPETVLAEVAATVAEPEVSLPEQSGARDVEKAERGG 524

Query: 447 RDDSRA 452
            D  R+
Sbjct: 525 NDRERS 530


>gi|21222498|ref|NP_628277.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
 gi|5918498|emb|CAB56376.1| ATP-dependent RNA helicase [Streptomyces coelicolor A3(2)]
          Length = 740

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 221/486 (45%), Gaps = 41/486 (8%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 62  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 121

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 122 TL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 178

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 179 LERGVDVLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGG 238

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL   Y KD     + +     + + +  ++V    +D A V    
Sbjct: 239 QRMLFSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVV--KPKDKAPVTAAI 296

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 297 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 356

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 357 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLM 416

Query: 361 REANVSVVWEPA-------PSVEAIR--------------------ERDAQRILQDPLFL 393
            +A V              P V  I                     ER+  ++ ++    
Sbjct: 417 EDAGVDATRHIIQGGAAFDPEVAEITGARSMTEVQAESAGNAAQQAEREVGQLTKELERA 476

Query: 394 DSIQGDEKKMVDVLLAK------HDPEKIAAG-FLRIHRAGLCAPEEITPVSLVSGRDRF 446
                + ++  D L+A+       DPE + A     +    +  PE+     +       
Sbjct: 477 QRRANELREEADRLVARVARERGEDPETVLAEVAATVAEPEVSLPEQSGARDVEKAERGG 536

Query: 447 RDDSRA 452
            D  R+
Sbjct: 537 NDRERS 542


>gi|228993029|ref|ZP_04152952.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
 gi|228999079|ref|ZP_04158661.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228760696|gb|EEM09660.1| ATP-dependent RNA helicase yqfR [Bacillus mycoides Rock3-17]
 gi|228766677|gb|EEM15317.1| ATP-dependent RNA helicase yqfR [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 187/371 (50%), Gaps = 12/371 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   N    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L  
Sbjct: 3   LQTFTQYNFQPFLIDAVRELRFSEPTEIQKKIFPVVKKGVSVIGQSQTGSGKTHAYLLPT 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSV 114
            + + A+ +          +  APTRELA Q+ +E+    ++      +     IGG   
Sbjct: 63  LNRIDAKREEV------QLVITAPTRELAQQIYQEIVKLTKFCEEDQMITARCLIGGTDK 116

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R    L+   H+V+GTPGR+ D +  K L +     +++DEAD MLD+GF  D++ I  
Sbjct: 117 QRSIEKLKKQPHVVIGTPGRIKDLVEEKALFVHKATTIIVDEADLMLDMGFIQDVDKIAA 176

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++   
Sbjct: 177 RMPKNLQMLVFSATIPQKLKPFMKKYMENPEHIHINPKQVAAGNIEHYLVPSRHRNKIEL 236

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           + N+L       AIVF +T+         LAE   +V  + G+LS ++R   ++ +RD  
Sbjct: 237 VKNMLLQFKPYLAIVFTNTKKKADEVADGLAERGLKVGRIHGDLSPRDRKKMMKQVRDLE 296

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     + 
Sbjct: 297 FQYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEE 356

Query: 355 RAERLFREANV 365
             + L ++ N+
Sbjct: 357 ALDSLEKQRNI 367


>gi|258652378|ref|YP_003201534.1| DEAD/DEAH box helicase domain-containing protein [Nakamurella
           multipartita DSM 44233]
 gi|258555603|gb|ACV78545.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
           44233]
          Length = 586

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/368 (34%), Positives = 184/368 (50%), Gaps = 11/368 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F      + I  AL++ G     ++Q   L   L   D++  A+TG GKT+ FG+ L  
Sbjct: 46  TFAEFGVDERIVTALADVGIERTFAIQALTLPIALTGSDLIGQARTGMGKTLGFGVPLLQ 105

Query: 61  TLLA-------ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            L         E  +     AP A+ + PTREL VQV R+L  L    G+ V    GG +
Sbjct: 106 RLSHDKAVTVDEKGKLPVGRAPRAVVMVPTRELCVQVTRDLHALGKALGLAVTAVYGGRA 165

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              + + LQ G  +VVGTPGRL D      L +  +K +VLDEADEMLDLGF  D+E +L
Sbjct: 166 YEPQIKALQAGVDLVVGTPGRLLDLANSGHLVLGGVKVLVLDEADEMLDLGFLPDMEKVL 225

Query: 174 DSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           D  P  ++ ++FSAT+   I T       +   +R   A+E   HS            D+
Sbjct: 226 DLVPTVKQTMLFSATMPGPILTLARTFMSRPMHIRAEAAAEGAMHSTTRQFVYRAHALDK 285

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  +L+  G    +VF  T+ + ++  + L E  F   A+ G+L Q  R  AL+  R
Sbjct: 286 VEMLARVLQARGRGLTMVFTRTKRTAAKVAEDLEERGFAAAAVHGDLGQGAREQALRAFR 345

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ +     +  +HR GRTGRAG+ G +V  I  +
Sbjct: 346 AGKVDVLVATDVAARGIDVDDVTHVINFQCPEEEKTYVHRIGRTGRAGKTGTAVSFIDWD 405

Query: 352 MQRRAERL 359
              R + +
Sbjct: 406 DIPRWQLI 413


>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 833

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 123/485 (25%), Positives = 210/485 (43%), Gaps = 36/485 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +   LL  
Sbjct: 317 NLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPILERLLYR 376

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     IGG S+  +   L+   
Sbjct: 377 PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENVLKKRP 433

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            I++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 434 DIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 493

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++ ++  L +      VR+ + ++ +    +              R  +++++ + 
Sbjct: 494 FSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLIHLCQQ 553

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             A   I+F   +    R   +      +   L G +SQ++R  +++  RDG+    +AT
Sbjct: 554 VYAARVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGKVAFLLAT 613

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA+RG+D+  +E VI+ E     E  LHR GRT RAGR G +  +     ++      +
Sbjct: 614 DVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKVVRAAVK 673

Query: 362 EANV------------SVVWEPAPSVEAIRER---------DAQRILQDPLFLDSIQGDE 400
                            +  + A  +E +R+          + + + Q  +     +   
Sbjct: 674 AGKTQGAKIVSRVIGSEIQDKLAEEIEGLRDEVDAILREEKEEKELAQVEMQTSKGENLL 733

Query: 401 KKMVDV-------LLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFR-DDSRA 452
           K   ++              ++ A     I   GL A         +SG+++ R DD+R 
Sbjct: 734 KHQTEIMSRPKRTWFETEKEKQEAQKRGLIELNGLDASLSKKEKRKLSGKEKKRLDDTRD 793

Query: 453 FKVGG 457
            K G 
Sbjct: 794 RKEGR 798


>gi|3335268|gb|AAC27384.1| RNA helicase [Caenorhabditis elegans]
          Length = 763

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 165/373 (44%), Gaps = 23/373 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   N+ + + + ++  GY   T +Q+  L    +  D++  AQTGSGKT AF L + 
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLLPIM 400

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + L+ +N+  +       P  + + PTRELA Q+  E      +T + +    GG++V  
Sbjct: 401 TRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGY 460

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDS 175
            +  ++ GA I+VGT GR+        + +   +  VLDEAD M+D      DIE I++ 
Sbjct: 461 NKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIVNY 520

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSD 230
               R+    +   S       +   +  +R N            +  +         S+
Sbjct: 521 DSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFERCERSE 580

Query: 231 RDN------------AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           + +                       K  +VF S RA       +L+      + + G  
Sbjct: 581 KKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADILASILSSAQVPAITIHGAR 640

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR 
Sbjct: 641 EQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRV 700

Query: 339 GRKGMSVFVIPQN 351
           G  G +   I ++
Sbjct: 701 GNSGRATSFISED 713


>gi|327277992|ref|XP_003223747.1| PREDICTED: nucleolar RNA helicase 2-like [Anolis carolinensis]
          Length = 628

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 148/611 (24%), Positives = 246/611 (40%), Gaps = 76/611 (12%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N  + +   + L  RG   L  VQ          KDV+  A+TG+GKT +F + L   
Sbjct: 50  FSNFDLSKATVDLLKARGVTYLFPVQVKTFKHISEGKDVIAQARTGTGKTFSFAIPLIEK 109

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  ++        P  L +APTRELA+QV R+ + +  K    VA   GG + + +   +
Sbjct: 110 LQRDSQERKRGRTPKVLVLAPTRELAMQVARDFKDVTRKL--TVACFYGGTAYNGQLDLI 167

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DH+    L IS LK VVLDE D+MLD+GF D +E IL  + KK  
Sbjct: 168 RNGIDILVGTPGRIKDHLENGKLEISSLKHVVLDEVDQMLDMGFADQVEDILKYAYKKDS 227

Query: 182 MLMF--------SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-- 231
                              +       + + + +      +    +++ A+    S R  
Sbjct: 228 EDNPQTLLFSATCPHWVYDVAKKYMKSKYEQIDLIGKKTKKTAMTVEHLAIECHWSQRAA 287

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +        I+FC T+   +      +          G++ Q++R   L+  R
Sbjct: 288 VIGDVLQVYSGSHGRTIIFCETKKEATELALNASIKQDAQSLH-GDIPQKQREVTLKGFR 346

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR GM +    + 
Sbjct: 347 NGAFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGMCICFYQRK 406

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              + +++ ++A ++      P+   I +  ++  ++    LDS+             + 
Sbjct: 407 EDYQLKQVEQKAGITFKRVGVPTATDIIKASSKDAIKS---LDSVPPSAIDYFRQSAERL 463

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF-----------RDDSRAFKVGGGSR 460
             EK A   L    A +     I   SL++    +           +    A++      
Sbjct: 464 IEEKGAVEALAAALAHISGATSIEQRSLLNSDAGYVTMMLQCSVEMQSIGYAWRGLKEQL 523

Query: 461 DNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
                S  F               M  L   +G+                 ++    +  
Sbjct: 524 GEDIDSKVFR--------------MRFLKGKTGVC---------------FDIPVAELPK 554

Query: 521 LRRTVKLDKGIQLKY---------------LGGEKPDFRGYKSSGFKSK---NSQDGATK 562
           L++T +  +  QL                  GG KPDFR  +  G  S      + G + 
Sbjct: 555 LQQTWQDSRRWQLSVATELPELEESLKEPGRGGGKPDFRNRRGGGGGSHFRNGRRGGDSN 614

Query: 563 RFKRFKGASKN 573
           R  RF+   + 
Sbjct: 615 RRDRFRNRGQK 625


>gi|297741568|emb|CBI32700.3| unnamed protein product [Vitis vinifera]
          Length = 523

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 165/367 (44%), Gaps = 15/367 (4%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ F  +         +   L+E G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 122 LENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAF 181

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L     + +      A+ + PTRELA Q  RE + L       + +    +  
Sbjct: 182 VCPMLMKL-----KHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLR 236

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L     I++ TP RL   IR K L++S ++ +VLDE+D++ +LG    I+ ++ 
Sbjct: 237 SGDISKL--PCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVK 294

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+   +  LA+    DAVRV I  +N     I  +     +   + 
Sbjct: 295 ACSNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKL 354

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++         LA    +V  +  +LSQ +R NA+   R 
Sbjct: 355 LALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRA 414

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IATDV ARG+D   +  VI+ +   +P   +HR GR+GRAGR G ++ +  ++ 
Sbjct: 415 GKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDD 474

Query: 353 QRRAERL 359
                 +
Sbjct: 475 VPFLRNI 481


>gi|227534475|ref|ZP_03964524.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187874|gb|EEI67941.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 448

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 198/451 (43%), Gaps = 14/451 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F+ +   + + L+       T +Q+ ++   LR ++++  +QTGSGKT AF + L S
Sbjct: 5   FKQFQ-LKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVPLLS 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRER 118
            +    D      A   +  AP+RELA Q+    +          +  +  G     +  
Sbjct: 64  MVDPTED------ATQVVITAPSRELANQIYAVAQQLIQTEPAIRINRLVGGMDKQKQID 117

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +   +  H+ +GTPGR+ D I+G  L  S ++  V+DEAD  LD+GF + ++ I  S P 
Sbjct: 118 KLQNHQPHVAIGTPGRILDMIKGYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPD 177

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +M +FSATI   +    + Y  +   + +  ++     ++   +     D++  I  +
Sbjct: 178 HLQMAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQL 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +        ++F +T+ SV      L     +V  + G +  +ER   ++ + D + +  
Sbjct: 238 VTMGHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYV 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATD+AARGID+  + +VI+AE+  + E  +HR GRTGR G  G +V +     + +   
Sbjct: 298 VATDLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAE 357

Query: 359 LFREANVSVVWEPAPSVEAI----RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           L     +    +   + E +    R R   R  +      +I+G  KK     +  +  +
Sbjct: 358 LE-HMGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKK 416

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
              A  L   R    A  +         R R
Sbjct: 417 IRTAVLLERKRNTKIARRQALLAEKRKNRKR 447


>gi|212634502|ref|YP_002311027.1| DEAD box helicase [Shewanella piezotolerans WP3]
 gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
          Length = 440

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 203/400 (50%), Gaps = 12/400 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +K F ++   P+++   L    Y + T++Q++ +   +   DVL  A TGSGKT AF L 
Sbjct: 21  LKSFADLGLIPELLA-TLDALAYQSPTAIQQSTIPAVIAGSDVLGGAITGSGKTAAFALP 79

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVH 115
           +   L     +   ++   +L + PTRELA QV              + V    GGVS +
Sbjct: 80  IIQLLAKSAKQTRQSNYVSSLILVPTRELAQQVADSFMRYAQNIKPNLKVLAVYGGVSTN 139

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            + + L+ GA I+V TPGRL D +    + +  + ++VLDEAD ML LGF D++  +L+ 
Sbjct: 140 SQMQSLRGGADILVATPGRLLDLMSSNAVKLDKVSSLVLDEADRMLSLGFTDELAALLEK 199

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P K++ L+FSAT    ++ L ++   + V V + SE +       R + V  + +   +
Sbjct: 200 LPAKKQTLLFSATFPEEVSLLTQSLLNNPVEVQLQSEEKNTL--VQRVITVNRNRKTPLL 257

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +++ +  +  ++F S + + +R  + L            +  Q  R+  L   + G  
Sbjct: 258 VELIKQNDWQQILIFASAKYTCNRLAQKLDNAGITAEIFHSDKGQGARTRVLDGFKRGET 317

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           RV IATD+AARGID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  + 
Sbjct: 318 RVLIATDIAARGIDIEKLPIVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYQH 377

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            + + ++  + +  E  P  EA    DA+     P  ++ 
Sbjct: 378 FKVIEKKNKLRLEREQYPGFEA----DAEAPEDCPSRIEK 413


>gi|225439904|ref|XP_002279705.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 524

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 165/367 (44%), Gaps = 15/367 (4%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ F  +         +   L+E G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 123 LENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAF 182

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L     + +      A+ + PTRELA Q  RE + L       + +    +  
Sbjct: 183 VCPMLMKL-----KHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLR 237

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L     I++ TP RL   IR K L++S ++ +VLDE+D++ +LG    I+ ++ 
Sbjct: 238 SGDISKL--PCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVK 295

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+   +  LA+    DAVRV I  +N     I  +     +   + 
Sbjct: 296 ACSNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKL 355

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++         LA    +V  +  +LSQ +R NA+   R 
Sbjct: 356 LALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRA 415

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IATDV ARG+D   +  VI+ +   +P   +HR GR+GRAGR G ++ +  ++ 
Sbjct: 416 GKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDD 475

Query: 353 QRRAERL 359
                 +
Sbjct: 476 VPFLRNI 482


>gi|254776598|ref|ZP_05218114.1| RhlE [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 505

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 126/374 (33%), Positives = 183/374 (48%), Gaps = 9/374 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL E+G  +  ++QE  L   L   D++  A+TG GKT AFG+ L   + A    
Sbjct: 19  DEIVRALDEKGIQHSFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLLQRITAGTAP 78

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERRDLQ 122
            +    P AL + PTREL +QV  +L              + V    GG     +   L+
Sbjct: 79  RALNGTPRALVVVPTRELCLQVTDDLTLAAKHLTADGGRPLSVVPIYGGRPYEPQIDALR 138

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL   P  R+ 
Sbjct: 139 AGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQIPDDRQS 198

Query: 183 LMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++FSAT+   I T       Q   +R         H             D+   +  +L+
Sbjct: 199 MLFSATMPDPIITLARTFMNQPTHIRAEAPHSAATHDTTVQYVYRAHALDKVELVSRVLQ 258

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G   V +A
Sbjct: 259 AESRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQVAREKALKAFRTGDIDVLVA 318

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  +   R   + 
Sbjct: 319 TDVAARGIDIDDVTHVINYQIPEDEQAYVHRIGRTGRAGKAGVAVTLVDWDELARWALID 378

Query: 361 REANVSVVWEPAPS 374
           +   + V  EPA +
Sbjct: 379 KALGLDVP-EPAET 391


>gi|328708487|ref|XP_003243704.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Acyrthosiphon
           pisum]
          Length = 777

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 160/355 (45%), Gaps = 4/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + +RGY   T +Q   +   L  +DV+  A+TGSGKT  F + +   L    
Sbjct: 35  LSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMARTGSGKTACFLIPMFEKLTQHT 94

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +      AL ++PTRELAVQ  + L+ +   T +  AV +GG  +  +   + +   
Sbjct: 95  --VNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSAVILGGDPMEAQFSTMHSAPD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR         L + +++ VV DEAD + ++GF + +  I+   P+ R+ L+FS
Sbjct: 153 IVVATPGRFLHLCVEMSLKLPYIQYVVFDEADRLFEMGFGEQLTEIIARLPETRQTLLFS 212

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+   +   A+        +R+++ S+      + +  V     D     +        
Sbjct: 213 ATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLNVRPEERDGALLCLLKYVVKPD 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T+  V     +L         +  +L    R       + G  +  I TD+A
Sbjct: 273 SMTIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTARKINASKFQTGSVKTLITTDIA 332

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARGID+P L+ VI+    +  +  +HR GR  RAG+ G +  ++ ++       L
Sbjct: 333 ARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQAYSLVTRDEMCYLLDL 387


>gi|30682500|ref|NP_196478.2| DEAD box RNA helicase (RH26) [Arabidopsis thaliana]
 gi|109893654|sp|Q9FNM7|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26
 gi|332003946|gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana]
          Length = 850

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 191/431 (44%), Gaps = 24/431 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+  P   +  +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443

Query: 62  LLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++      R S     + L + PTRELA Q   E   L      +    V  G      +
Sbjct: 444 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 503

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           RR   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 504 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 563

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVL----VA 227
           + PK+R+  +FSAT+   +  +     K         +      H  +    ++      
Sbjct: 564 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 623

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S     +   +  +     I+FC+T         +L++    V  +     Q  R+   
Sbjct: 624 FSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVS 683

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V +
Sbjct: 684 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 743

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +    +     +    ++ +   P P ++    +  Q+ L      +     ++      
Sbjct: 744 LAPWEEYFMSSV---KDLPITKSPLPPIDPEAVKRVQKGLSQVEMKN-----KEAAYQAW 795

Query: 408 LAKHDPEKIAA 418
           L  +  +K+ A
Sbjct: 796 LGYYKSQKMIA 806


>gi|9759355|dbj|BAB10010.1| RNA helicase-like protein [Arabidopsis thaliana]
          Length = 827

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/431 (27%), Positives = 191/431 (44%), Gaps = 24/431 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+  P   +  +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 361 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 420

Query: 62  LLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++      R S     + L + PTRELA Q   E   L      +    V  G      +
Sbjct: 421 VIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 480

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           RR   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 481 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 540

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN---RQHSDIDYRAVL----VA 227
           + PK+R+  +FSAT+   +  +     K         +      H  +    ++      
Sbjct: 541 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRH 600

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            S     +   +  +     I+FC+T         +L++    V  +     Q  R+   
Sbjct: 601 FSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVS 660

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V +
Sbjct: 661 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 720

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +    +     +    ++ +   P P ++    +  Q+ L      +     ++      
Sbjct: 721 LAPWEEYFMSSV---KDLPITKSPLPPIDPEAVKRVQKGLSQVEMKN-----KEAAYQAW 772

Query: 408 LAKHDPEKIAA 418
           L  +  +K+ A
Sbjct: 773 LGYYKSQKMIA 783


>gi|328870453|gb|EGG18827.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 897

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/419 (23%), Positives = 183/419 (43%), Gaps = 8/419 (1%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  ++  + L E+ Y+++T +Q + +   L  +D+L +A+TGSGKT+AF + +   
Sbjct: 132 FNQLPISKLTMKGLDEKKYIDMTDIQRSSIPHSLCGRDILGAAKTGSGKTLAFIVPMLEL 191

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    + ++      A+ ++PTRELA+Q+   L            + IGG +V  E++ +
Sbjct: 192 LY--RNSWNIEDGVGAIILSPTRELAIQIFDVLRDAGKYHSFSAGLIIGGKNVDNEKKKI 249

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L      +G   ++L+ ++LDEAD +LD GF   +  I+ + P  R+
Sbjct: 250 NEMNILIATPGRLLQHMDETEGFRCNNLQMLILDEADRILDFGFTKTLNSIVQNLPSSRQ 309

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++         + + V V         +++    +   L D+ N + + L
Sbjct: 310 TLLFSATQTKSVKDLARLSLREPEYVSVYDRDLMSTPANLTQTVMFSTLEDKINLLYSFL 369

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
             H  K  IVF +T   V    +                  ++ S     Q   D +   
Sbjct: 370 HSHLTKKTIVFLTTCKQVRFIYETFYLINPGCRLFQLHGKMKQTSRLDVFQQFCDEKMGT 429

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATDVAARG+D P ++ VI  +   +    +HR GRT R   +G S+ V+    +   +
Sbjct: 430 LFATDVAARGLDFPTVDWVIQMDCPDDIATYIHRVGRTARNNTEGNSLTVLLPTEKPFIK 489

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
            + ++     + E  P      +     IL + + L  +           + + D +++
Sbjct: 490 LMEKQNIHHQILETNPEKSINIQPKLAAILSEKVDLKYLAQKAFITYVKSIYRQDNKEV 548


>gi|325919452|ref|ZP_08181477.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
 gi|325550072|gb|EGD20901.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
          Length = 438

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/392 (31%), Positives = 197/392 (50%), Gaps = 16/392 (4%)

Query: 3   IFENI---PQVI---GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+++   PQ++     AL+  G+   T +Q+  + P L+ +D++  AQTGSGKT+A+ L
Sbjct: 11  SFDHLDLSPQLLPAFTAALARAGHHTPTPIQQQAIQPMLQGRDLIAMAQTGSGKTLAYAL 70

Query: 57  ALASTLLAENDRFSPASAPL---ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVS 113
            L           +P +AP    AL + PTRELA QV   L  L A     + +      
Sbjct: 71  PLLQQ-----RCLAPETAPRVLGALVLVPTRELAAQVEDTLHQLAAHLPRRLKIVTATGG 125

Query: 114 VHRERR--DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
                +   L+ GA IVV TPGRL D +    L +S +  +VLDEAD +L+LGF  +++ 
Sbjct: 126 SSINPQLLALRGGADIVVATPGRLLDLVDHNALRLSEVATLVLDEADRLLELGFGAELDR 185

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           IL   P +R+ ++FSAT  P I +LAK   +D +R+ I +       I+ RA+ V    R
Sbjct: 186 ILALLPAQRQSVLFSATFPPGIASLAKRRLRDPLRITIVATPDAAPAIEQRAIAVDAGQR 245

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + ++L+ HG  + +VF ++R +  +  + L +       L GELSQ  R   L   +
Sbjct: 246 TQLLRHLLQEHGWSHVLVFVASRHTAEKVAEKLTKTGINAQPLHGELSQGRRERTLYAFK 305

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
               +V +ATD+A RGID+  L  VI+ +L  +  +  HR GRT RAG  G+++  +   
Sbjct: 306 QREVQVLVATDLAGRGIDIDALPAVINYDLPRSTVDYTHRIGRTARAGASGVAISFVSAE 365

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDA 383
            Q +   + +   + V        E     DA
Sbjct: 366 SQPQWRLIEKRQGLRVPTSVVAGFEPTLATDA 397


>gi|301101090|ref|XP_002899634.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262103942|gb|EEY61994.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 456

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 110/368 (29%), Positives = 186/368 (50%), Gaps = 9/368 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + + L + G    T++Q       L  +D++  A+TGSGKT+AF L +   ++ + 
Sbjct: 69  LDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQR 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +       P+AL +APTRELA Q   + +   A  G   A   GG     + + L+ G  
Sbjct: 129 E-LQRGEGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVE 187

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL + IR K   ++ +  VVLDEAD M ++GF   +  ++      R++LMFS
Sbjct: 188 VVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQILMFS 247

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--HGA 244
           AT    I TLA +   + V++ +    + + DI   AV++         +          
Sbjct: 248 ATFRRRIETLALDVLTNPVKLTVGQIGQANEDIRQIAVVLPGHGAKWPWLMSKIRSLVDE 307

Query: 245 KNAIVFCSTRASVSRFTKV--LAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              ++F  ++A      K   +A      + L G+ +QQER+ AL   + G  RV +ATD
Sbjct: 308 GRLLIFAGSKAGCEELAKNLAVAFPAAPALCLHGDKTQQERAEALTKFKHGACRVLVATD 367

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG----RKGMSVFVIPQNMQRRAER 358
           VAARG+D+ D++ V++ +++ + +  +HR GRTGR G      G +  ++ +N  + A +
Sbjct: 368 VAARGLDVKDVKNVVNFDVAKSIDTHVHRIGRTGRMGLEGFEPGTAYTLVTRNESQFAAQ 427

Query: 359 LFREANVS 366
           L    +VS
Sbjct: 428 LVYNMDVS 435


>gi|33598402|ref|NP_886045.1| ATP-dependent RNA helicase DbpA [Bordetella parapertussis 12822]
 gi|33574531|emb|CAE39177.1| probable ATP-dependent RNA helicase [Bordetella parapertussis]
          Length = 462

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L           AP A
Sbjct: 22  LGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNR------LAPQA 75

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ 
Sbjct: 76  LVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQ 135

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L
Sbjct: 136 DHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  + ++   +         S I+     +    R +A+  +L +    + + FC+T+  
Sbjct: 196 SARFLRNPAEI-KVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIR 254

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  V
Sbjct: 255 SHDLVERLRAQGISAEALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +++ + E  +HR GR+GR  +KG+++ +      R A  + +     + W    S+ 
Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLR 374

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + R L+ P+    IQG +K  + 
Sbjct: 375 P----KSDRPLRAPMITLCIQGGKKDKLR 399



 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R E L + AN S     A  V A R  D Q +        +   +          +
Sbjct: 277 EQRERDEILIQFANQSCAVLVATDVAA-RGLDIQNLGAVINVDVTKDTEVHVHRIGRSGR 335

Query: 411 HDPEKIAAGFLR---IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            D + +A        +  A L    +  P+             R  +             
Sbjct: 336 GDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRA---------PMI 386

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRR 523
              +  G K K     L+  L    G+  + +G I +     +V    +V+      L  
Sbjct: 387 TLCIQGGKKDKLRPGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSN 446

Query: 524 TVKLDKGIQLKYL 536
           +    +  ++++L
Sbjct: 447 SNIKGRRFRMRFL 459


>gi|116194814|ref|XP_001223219.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
 gi|118575176|sp|Q2H2J1|DBP4_CHAGB RecName: Full=ATP-dependent RNA helicase DBP4
 gi|88179918|gb|EAQ87386.1| hypothetical protein CHGG_04005 [Chaetomium globosum CBS 148.51]
          Length = 825

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/395 (24%), Positives = 181/395 (45%), Gaps = 14/395 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  +     L    +  LT VQ A +   L+ +D+L +A+TGSGKT+AF + +
Sbjct: 52  IKQFTDLPLCEATASGLRASHFEVLTDVQRAAIPLALKGRDILGAAKTGSGKTLAFLVPV 111

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL I+PTRELAVQ+   L  +         + IGG S+  E 
Sbjct: 112 LEKLYH--AKWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHFFSAGLVIGGKSLKEEA 169

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +    ++++L+ +VLDEAD ++D+GF+  ++ +++  P 
Sbjct: 170 ERLGRMNILVCTPGRMLQHLDQTANFDVNNLQILVLDEADRIMDMGFQSAVDALVEHLPT 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT S  ++ LA+   K+   V+      +   +++    ++  L+++ + + 
Sbjct: 230 TRQTLLFSATQSKRVSDLARLSLKEPEYVSAHEAAVSATPTNLQQSYIVTPLAEKLDTLF 289

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
             LR +     IVF S+   V    +        +  L     Q++ +           +
Sbjct: 290 GFLRTNLKSKIIVFFSSGKQVRFVFESFKRMQPGIPLLHLHGRQKQVARMEITSRFSSAK 349

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARG+D P ++ V+ A+   + +  +HR GRT R   KG +V  +  + + 
Sbjct: 350 YGCLFATDVVARGVDFPAVDWVVQADCPEDADTYIHRVGRTARYESKGRAVLFLEPSEEA 409

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
              +   +  V +          +RE   + I  +
Sbjct: 410 GFLKRLEQKKVPLQKVN------VRENKKKSIKNE 438


>gi|327356974|gb|EGE85831.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 798

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/424 (26%), Positives = 195/424 (45%), Gaps = 39/424 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 362 SGLPKRLLNIIEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 421

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +   A  G  V   +GG S+  +   
Sbjct: 422 LPRLDEFEWRRNDGPYAIILAPTRELAQQIELEAKKFSAPLGFNVVSIVGGHSLEEQAYS 481

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + +  S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 482 LRNGAEIIIATPGRLVDCIERRMIVFSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 541

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------------ 216
           +        +P   +     +    +  + +                             
Sbjct: 542 QKPDTEDAENPQAMSQHIGGKDRYRQTMMYTATMPPAVERIARKYLRRPAIVTIGNIGEA 601

Query: 217 -SDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 602 VDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 661

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N EN  HR G
Sbjct: 662 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIENYTHRIG 721

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEA-----IRERDAQR 385
           RTGRAG+ G+++  +           +++  ++ +S V E     EA     +R   AQ+
Sbjct: 722 RTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKSAISRVPEELRKHEAAQSKPVRGAGAQK 781

Query: 386 ILQD 389
            +++
Sbjct: 782 KIEE 785


>gi|320583326|gb|EFW97541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Pichia angusta
           DL-1]
          Length = 533

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/401 (25%), Positives = 194/401 (48%), Gaps = 21/401 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             I  +I + L   GY   T +Q A +   L  +D++  A+TGSGKT+AF +   + +L 
Sbjct: 133 SQISPLILQQLEALGYTEPTPIQRAAVPNGLTGRDLVGIAETGSGKTLAFLIPSVNYIL- 191

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  R      P  L + PTRELA+Q+ RE     +    V+++  G        + L+ G
Sbjct: 192 QLPRLGRFEGPYVLILVPTRELALQIEREFSKFASLGFDVISLIGGHSYDEHAEK-LERG 250

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +++ TPGRL D +  + +++     +V+DEAD M+D+GF +D+  IL+S P       
Sbjct: 251 VEVIIATPGRLVDCLEQQLVSLDRCFFLVMDEADRMIDMGFENDLNKILESLPDGSENPH 310

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR--------------AVLVALSD 230
           +  +  P  TT+            I+++  ++                      +    +
Sbjct: 311 YLGSGEPKRTTMMFTATMPPQIEKISAKYLKNPGTVMVGEVGGAVDSVRQEAIQVDDSDE 370

Query: 231 RDNAIVNILRYH--GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           +   ++  +      +   I+F + R +     + L +  F  V + G  +Q++R  A+Q
Sbjct: 371 KRLQMLQKVLTRGIYSPPIIIFVNFRKTCEMVAEFLEQLGFNAVTMHGSKTQEQREYAIQ 430

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
            +++GR+ + +ATDVA RGID+PD+ LV++ +++ N E+  HR GRTGRAG++G ++   
Sbjct: 431 QIKEGRSDILVATDVAGRGIDIPDVSLVVNFQMAKNIEDYTHRIGRTGRAGKEGTAITFW 490

Query: 349 P---QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
                ++    +++  ++ VS   E      A +++  + I
Sbjct: 491 SAADADVLYNLKQMITKSPVSRCPEELRRHPAAQKKMVKNI 531


>gi|302818592|ref|XP_002990969.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
 gi|300141300|gb|EFJ08013.1| hypothetical protein SELMODRAFT_42150 [Selaginella moellendorffii]
          Length = 421

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/397 (25%), Positives = 172/397 (43%), Gaps = 31/397 (7%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    ++ + + +  +   T VQ+  +   L  +D++  AQTGSGKT AF   +  
Sbjct: 14  SFDDLSLHSILNDNIRQCRFTVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIE 73

Query: 61  TLLAE----NDRFSPASAPLALAIAPTRELAVQVGREL----------EWLYAKTGVVVA 106
            +L E     +     S PLAL ++PTRELA Q   EL          +  +        
Sbjct: 74  GILREPVPGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFIADEAFKFCYQTGV 133

Query: 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR 166
                    R   D   G  I+V TPGRL D +  + + +  LK + LDEAD MLD+GF 
Sbjct: 134 RVGVVYGGTRLWSDNLGGVDILVATPGRLNDLLDREMVELQKLKYLTLDEADRMLDMGFE 193

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDY 221
             I  I++ S      L  +   S       +    + +R +             S I+ 
Sbjct: 194 PQIRRIVEESGMPGAELRQTLMFSATFPKKIQRLAGEFLRKDYVFLAIGEVGSSTSRIEQ 253

Query: 222 RAVLVALSDRDNA-------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
             + V  + + +               +  +  +VF  T+         L    +  +A+
Sbjct: 254 EVIFVQRNQKYDCLGMVIDRQQMHGTKNNVRKTLVFVGTKLKADDLEIWLRSRGYVAIAI 313

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+ +Q+ER  AL+  + G   + +AT+VA+RGID+PD+  VI+ +L +N ++ +HR GR
Sbjct: 314 HGDKTQEERRRALKSFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTNIDDYVHRIGR 373

Query: 335 TGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVV 368
           TGRAG++G +  +          +   L    N  V 
Sbjct: 374 TGRAGKRGFATALFCDGDAPLAHKLVHLLESCNQQVP 410


>gi|223590197|sp|A5DKW3|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
 gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/470 (25%), Positives = 228/470 (48%), Gaps = 22/470 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +   GY   +++Q A +   +  KD++  A TGSGKT A+ + +
Sbjct: 197 ITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPI 256

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              L+    + +  SA   + + PTRELA+QV    + L      +   + +GG+++ ++
Sbjct: 257 IERLIY---KPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQ 313

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDI-EFILDS 175
            + L++   IVV TPGRL DHIR     +I +L+ +V+DEAD ML+ GF+ ++ E +   
Sbjct: 314 EQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELI 373

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              KR+ ++FSAT++  I  L +      VR+ +    +  S +    V +   +     
Sbjct: 374 PKHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPA 433

Query: 236 VNIL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +                +VF S +    R   VL     +V  L G L+Q++R  +++  
Sbjct: 434 LLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVSELHGSLTQEQRLQSVKDF 493

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R     V I TD+AARG+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + +
Sbjct: 494 RSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGE 553

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + Q R   + ++A  S+  +   + +A+      + +++   L+SI   +K  +D +L +
Sbjct: 554 SNQDR--SIVKDAIKSLEEQK--NGKAVSRTVDWKKVEE---LNSIVESKKDTIDEVLEE 606

Query: 411 H-DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
               ++I    +++ +A     +    +     R  F+ +    +     
Sbjct: 607 EKSAKEILQAEMQLEKAS-NIMKHEKEIHSRPKRTWFQSEQEKKQAQRTP 655


>gi|258573425|ref|XP_002540894.1| hypothetical protein UREG_00407 [Uncinocarpus reesii 1704]
 gi|237901160|gb|EEP75561.1| hypothetical protein UREG_00407 [Uncinocarpus reesii 1704]
          Length = 608

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 170/390 (43%), Gaps = 39/390 (10%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T VQ   +   L   D++  AQTGSGKT AF + +
Sbjct: 128 IKSFDDAGLHPVVLENVKHCGYEVPTPVQAYAIPAVLTGYDLIAVAQTGSGKTAAFLIPV 187

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTRELA Q+  E   L  ++ 
Sbjct: 188 ISKLMGKAKKLAAPRPDLTNGFNESVDAVRAEPLVLIVAPTRELATQIFDEARRLCYRSM 247

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEML 161
           +   V  GG     +R DL  G  I++GTPGR+ D +     L+++ +K  ++DEADEML
Sbjct: 248 LRPCVIYGGAPTREQRIDLHKGCDILIGTPGRILDFMAKPHLLSLNRVKYTIIDEADEML 307

Query: 162 DLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
              +  +   I+     +     R M+  +           +    D VR+ +      H
Sbjct: 308 QSDWEREFTQIMSGGDVNEDADHRYMMFSATFNKACRQLARRFLSTDHVRIRVGRAGSSH 367

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++  + +      +  A+ +++        ++F +++         L  +     ++  
Sbjct: 368 LNVTQQVIFTEDDKKRKALYDLILSMPPSRTLIFVNSKPQADLIDDFLFNNGLPSTSIHS 427

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRS 332
           + +Q+ER +A++  R G   + + T V+ARG+D+  +  VI+ +L S      +  +HR 
Sbjct: 428 DRTQREREDAIRAFRTGVCPIMVTTGVSARGLDIRHVMHVINFDLPSVDHGGIDEYIHRI 487

Query: 333 G-----------RTGRAGRKGMSVFVIPQN 351
           G           RT R G +G++      +
Sbjct: 488 GMPSFQYLKELWRTARIGNQGLATSFYNDD 517


>gi|170094876|ref|XP_001878659.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647113|gb|EDR11358.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 617

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 178/382 (46%), Gaps = 18/382 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    IP+ I E L  +  V  T +Q   +      +D++  A TGSGKT+AF L L  
Sbjct: 186 MK----IPEAILEYLKSKRIVTPTPIQLQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIM 241

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGG 111
             L E  +  F     P+ + + P+RELA Q    +               +   +C+GG
Sbjct: 242 LALEEESKLPFVRGEGPVGIILCPSRELANQTYENVVTWCAALAKDGKYPPLNSLLCMGG 301

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +S+  +   +  G HIVV TPGRL D +  K   +   K + +DEAD M+DLGF +D+  
Sbjct: 302 ISMSDQSHVMSKGLHIVVATPGRLIDMLEKKKFTLDSCKYLCMDEADRMIDLGFEEDVRN 361

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+     +R+ L+FSAT+   I   A+      V VN+      + D+      V    +
Sbjct: 362 IMSFFKHQRQTLLFSATMPRKIQEFARESLIKPVLVNVGRAGAANLDVLQVVEYVKQEAK 421

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       I+F   +  V    + L     + VA+ G  +Q+ER  A++  +
Sbjct: 422 MVYLLECLQKTPPP-VIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKTQEERQYAIKSFK 480

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI--- 348
            G   V +A+ VA++G+D  +++ VI   +    E+ +H+ GRTGR+G+ G++   +   
Sbjct: 481 SGAKDVMVASGVASKGLDFSEIQHVIIFSMPKEIEDYVHQIGRTGRSGKTGIATTFVNMN 540

Query: 349 -PQNMQRRAERLFREANVSVVW 369
            P+      + L  EA   V  
Sbjct: 541 TPEQTLLDLKYLLMEAGQKVPP 562


>gi|42783412|ref|NP_980659.1| DEAD-box ATP dependent DNA helicase [Bacillus cereus ATCC 10987]
 gi|42739341|gb|AAS43267.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           ATCC 10987]
          Length = 436

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 183/373 (49%), Gaps = 12/373 (3%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F   +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   
Sbjct: 4   KTFTQYDFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTL 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVH 115
           + +    +          +  APTRELA Q+  E+    ++      +     IGG    
Sbjct: 64  NRINPGREEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQ 117

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R    L+   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I   
Sbjct: 118 RSIEKLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAAR 177

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK  +ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +
Sbjct: 178 MPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLV 237

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   
Sbjct: 238 KRMLLQFKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEF 297

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +  
Sbjct: 298 QYIVATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEA 357

Query: 356 AERLFREANVSVV 368
            + L ++ ++   
Sbjct: 358 LDSLEKQRHIEFK 370


>gi|310790707|gb|EFQ26240.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 733

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/415 (26%), Positives = 189/415 (45%), Gaps = 34/415 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ +E   +P+ +   +   GY + + +Q A +   L+ +D++  A TGSGKT AF L L
Sbjct: 289 MRSWEESGLPRQLLNIVDRVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPL 348

Query: 59  ASTLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + +         +      AL +APTREL  Q+  E        G  V   +GG S+  
Sbjct: 349 LTYIQDLPPLTEINKNDGAYALILAPTRELVQQIETEAHKFADPLGFNVVSIVGGHSLEE 408

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   L  GA I+V TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ 
Sbjct: 409 QVHALSRGAEIIVATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEESVNKILDAL 468

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---------------- 220
           P            +  +            +  + +     +                   
Sbjct: 469 PVSNEKPDTDDAENAQLMQKYLGATDRYRQTMMYTATMPPTVEKIARKYLRRPAIVTIGN 528

Query: 221 ---------YRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                     R   V+  D+    +  +      A   IVF + + +     + +    +
Sbjct: 529 AGEAVETVEQRVEFVSGEDKKKKRLQEILGAGDFAPPIIVFVNIKRNCDAVARDVQRMGY 588

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R+G+ +V +ATD+A RGID+PD+ LVI+  +++N E+  
Sbjct: 589 SAVTLHGSKTQEQREAALASVRNGQTQVLVATDLAGRGIDVPDVSLVINFNMATNIESYT 648

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           HR GRTGRAG+ G+++  + Q+        +++  ++ +S V E     EA +++
Sbjct: 649 HRIGRTGRAGKSGVAITFLEQSDSDLFYDLKQMLSKSAISRVPEELRRHEAAQQK 703


>gi|299470469|emb|CBN78461.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 1012

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 167/380 (43%), Gaps = 32/380 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  + EA+ E GY   + +Q   +   +  +D++  A+TGSGKT AFG+ + + +L+ 
Sbjct: 582 HLPSSVMEAIRELGYEKPSPIQRQAIPIGMERRDIIGIAETGSGKTAAFGIPMIAYILSL 641

Query: 66  NDRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       PLAL +APTRELA+Q+  E +      G+     +GG  +  +   L+
Sbjct: 642 EAGMRDRVADQGPLALIMAPTRELAIQIEEECKKFCKFAGLNTVCVVGGQDIEAQAFTLR 701

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI------------- 169
            G  I++GTPGRL D +    L ++    VVLDEAD M+D+GF D +             
Sbjct: 702 KGVEIIIGTPGRLNDCVEKHYLVLNQCNYVVLDEADRMIDMGFEDQVLAVLEAMGGTLKA 761

Query: 170 ---------------EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
                                  +   M   +   +              V++      +
Sbjct: 762 DDAELAYKQEKKAKQARSAADLVRVTAMFSATMPAAVEKMAKKYLRHPAIVQIGDEDTGK 821

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
                     +     +      +  +      +VF +T+ S     + L +  F    L
Sbjct: 822 NRRIEQRVLWMTEAQKKTKVTELLRGHDKEDRVLVFINTKKSADMLGRQLEQAGFPTGVL 881

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G  +Q +R   L+  RDG   V +ATDVA+RG+D+PD++ VI+ EL +  E   HR GR
Sbjct: 882 HGGKTQDQREENLESFRDGDYTVLVATDVASRGLDIPDVK-VINYELPNKIETYCHRIGR 940

Query: 335 TGRAGRKGMSVFVIPQNMQR 354
           TGRAG+ G++   + ++ + 
Sbjct: 941 TGRAGKDGVATSFLTEHDEE 960


>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
          Length = 701

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 28/374 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
            P  + +A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    ++L 
Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLP 367

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
               +      P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 368 KMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRM 427

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ +L+  P      
Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKK 487

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENR-------------------------QHSD 218
                 +        + ++   +  + +                                
Sbjct: 488 DTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTER 547

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V    +   +V +L        I+F + +      +K L +  F+   L G  
Sbjct: 548 VEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGK 607

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q +R  ALQ +++G + + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGRA
Sbjct: 608 GQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRA 667

Query: 339 GRKGMSVFVIPQNM 352
           G+ G ++  +  + 
Sbjct: 668 GKHGKAITFLTPDD 681


>gi|148540060|ref|NP_001038443.2| probable ATP-dependent RNA helicase DDX59 [Danio rerio]
 gi|141795432|gb|AAI34851.1| LOC562123 protein [Danio rerio]
          Length = 584

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/409 (27%), Positives = 201/409 (49%), Gaps = 12/409 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P V+ + L   GY   T VQ  ++   L  +DV+ +A TGSGKTVAF L +    L ++
Sbjct: 177 FPTVLEKNLKVAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRAL-QS 235

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           +  SP S P  L + PTRELA+Q+  + +  +     +  A+ +GG+ +  +   L++  
Sbjct: 236 ESASP-SCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGMPLPPQLHRLKHNI 294

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+GTPGRL + ++ K + + H++ VV+DEAD ML +GF+  +  IL+  P+  + L+ 
Sbjct: 295 KIVIGTPGRLLEILKQKAIQLDHVRTVVVDEADTMLKMGFQQQVLDILEQVPEDHQTLLT 354

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVNILRYH 242
           SATI      LA+    D V + I  +N+  +++          +   +   I+N  + +
Sbjct: 355 SATIPTGTQQLAERLTHDPVTITIGQKNQPCANVRQIVLWVEEPSKKKKLFEILNDEKLY 414

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +       +      V        VA+  +  Q ER+  ++ + +G+  V I+T 
Sbjct: 415 QPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIVKGLLEGQFDVVISTG 474

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +  RG+DL +++LVI+ ++ SN +  +H+ GR GR G +G ++  +  N +R    + + 
Sbjct: 475 ILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITFMNNNNKRLFLEMVKR 534

Query: 363 ANVSVVWEPA-----PSVEAIRERDAQRILQDP-LFLDSIQGDEKKMVD 405
              +    P      P +   + RD Q+  Q     L  IQ  +K+   
Sbjct: 535 VKPTGSILPPQILNSPHLHEQQRRDKQKNTQHTHSILHLIQQHDKRSAR 583


>gi|33593906|ref|NP_881550.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis Tohama I]
 gi|33563980|emb|CAE43244.1| probable ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
 gi|332383325|gb|AEE68172.1| ATP-dependent RNA helicase DbpA [Bordetella pertussis CS]
          Length = 462

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L           AP A
Sbjct: 22  LGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNR------LAPQA 75

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ 
Sbjct: 76  LVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQ 135

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L
Sbjct: 136 DHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  + ++   +         S I+     +    R +A+  +L +    + + FC+T+  
Sbjct: 196 SARFLRNPAEI-KVEAQHDASRIEQLFFEIDEGQRLDAVATLLAHFRPASTLAFCNTKIR 254

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  V
Sbjct: 255 SHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +++ + E  +HR GR+GR  +KG+++ +      R A  + +     + W    S+ 
Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLR 374

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + R L+ P+    IQG +K  + 
Sbjct: 375 P----KSDRPLRAPMITLCIQGGKKDKLR 399



 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R E L + AN S     A  V A R  D Q +        +   +          +
Sbjct: 277 EQRERDEILIQFANQSCAVLVATDVAA-RGLDIQNLGAVINVDVTKDTEVHVHRIGRSGR 335

Query: 411 HDPEKIAAGFLR---IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            D + +A        +  A L    +  P+             R  +             
Sbjct: 336 GDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRA---------PMI 386

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRR 523
              +  G K K     L+  L    G+  + +G I +     +V    +V+      L  
Sbjct: 387 TLCIQGGKKDKLRPGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSN 446

Query: 524 TVKLDKGIQLKYL 536
           +    +  ++++L
Sbjct: 447 SNIKGRRFRMRFL 459


>gi|315051548|ref|XP_003175148.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
 gi|311340463|gb|EFQ99665.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Arthroderma
           gypseum CBS 118893]
          Length = 813

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 375 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 434

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 435 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 494

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 495 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 554

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 555 EKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 614

Query: 216 --HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               +     V      +      +         IVF + + +     + +    F  V 
Sbjct: 615 VDTVEQRVEFVAGEDKRKKRLAEILTSRDYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 674

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 675 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 734

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 735 RTGRAGKSGVAITFLGSEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 785


>gi|282863532|ref|ZP_06272591.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282561867|gb|EFB67410.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 790

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 129/443 (29%), Positives = 209/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 121 LPEGIVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAAL---A 177

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 178 GGRTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 237

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 238 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQIPGGGQRMLFS 297

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     S + +  ++V    +D A V          
Sbjct: 298 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVSTMSHHVLVV--KPKDKAPVTAAIAARKGR 355

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 356 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 415

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V 
Sbjct: 416 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGVD 475

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                           A+  +     L  +Q D         A+ +   +     R+ R 
Sbjct: 476 ASRHIVQGAGVFEPEVAE--ITGARSLTEVQADSANNAAKQ-AEREAADLTKQLERVQRR 532

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
            +   EE   +   + R+R  D 
Sbjct: 533 AVELREEADRLVARAARERGDDP 555


>gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 409

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 116/360 (32%), Positives = 178/360 (49%), Gaps = 11/360 (3%)

Query: 3   IFENIP--QVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F  +P    +  AL +E      T +Q   +   ++ +DVL  AQTGSGKT A+GL L 
Sbjct: 2   SFSTLPLSPSLIHALPNELN--TPTDIQRHAIPALVKHQDVLALAQTGSGKTYAYGLPLL 59

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +     +        AL + PTREL  QV + L  +  K  +  A+  GG+S  ++  
Sbjct: 60  QQIDPSQPKI------QALILVPTRELTTQVHQSLNTIAEKMAIRTAILCGGISQEQQEE 113

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L +   +V+ T GRL D +    +++SH+K+ VLDEAD +LD+GF  DI+ I+   P K
Sbjct: 114 TLNSQPQLVIATTGRLLDALSKGQVSLSHIKSWVLDEADRLLDMGFWPDIQKIIQQLPAK 173

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+  +FSAT+   + +L +      VR+     N     I  +  LV    +  A++ +L
Sbjct: 174 RQTALFSATLPEQLESLTQEVLFKPVRIEAQKTNSVVDTISEQLYLVNKGSKPQALIALL 233

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           + +  +  +VF   R +     K L +   Q  AL G   Q ER   L   +  +  V I
Sbjct: 234 KQYPTQQTLVFIGARDNADALCKRLMKAGVQAAALHGHKEQTEREQILADFKAKKLNVVI 293

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDV ARGI +  L LVI+ +L SN    +HR GRTGRAG  G+++ ++          +
Sbjct: 294 ATDVLARGIHIEQLPLVINFDLPSNAATYVHRVGRTGRAGNNGLALSLVCHGETEFLTAI 353


>gi|167534955|ref|XP_001749152.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772305|gb|EDQ85958.1| predicted protein [Monosiga brevicollis MX1]
          Length = 543

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/409 (25%), Positives = 181/409 (44%), Gaps = 40/409 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +AL+E  +   + +Q   +   L  +DV+  A TGSGKT+AF + +   L A  +   
Sbjct: 91  LLQALTEF-FKEPSPIQMQAIPALLSNRDVVGVAPTGSGKTLAFAVPMMQLLQAPKEE-- 147

Query: 71  PASAPLALAIAPTRELAVQVGREL---------------------------EWLYAKTGV 103
                    +APTRELA Q+ REL                           +      G 
Sbjct: 148 ---GFRCCILAPTRELAAQIKRELDLLNTHLHLKISLLTKARAASGSLTSSKKHGWWPGC 204

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              + +    + +    ++    I+V TP RL   ++ K +++S ++ +V+DEAD + + 
Sbjct: 205 PKMIPVCPKVLLKLTWCMRARPDILVATPMRLVHALQHKLVDLSAVRWLVVDEADRLFEN 264

Query: 164 GFRDDI-EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           GF   I E I   S KKRR+ +FSAT+   + TLA+    D VR+ + + N  + D++  
Sbjct: 265 GFEQQIDEVIAACSHKKRRIALFSATMPERVETLAQTVLHDYVRIVVGAANAANQDVEQE 324

Query: 223 A-VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
              + +   +  AI  +L+       ++F  +++   +  + L      V  +  + +QQ
Sbjct: 325 LKFVGSEEGKMTAIRQMLQTGLQPPVLIFVQSKSRAQQLFEELVYENVNVDVIHADRTQQ 384

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R   ++  R+G+  V I TD+  RG+D   + +VI+ +   N    +HR GRTGRAG +
Sbjct: 385 QRDEVVKRFREGQVWVLICTDLMGRGVDFKAVNVVINYDFPPNATEYIHRVGRTGRAGHR 444

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEP-----APSVEAIRERDAQR 385
           G +V     + +     +      S    P         E  R R  +R
Sbjct: 445 GRAVTFFTVDDRPMLRNIANVVKASGSEVPEWMLKLKKTEKQRSRQIER 493


>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 705

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/456 (26%), Positives = 225/456 (49%), Gaps = 23/456 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + + + + +   GY   +++Q A +   +  KD++  A TGSGKT A+ + +
Sbjct: 197 ITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPI 256

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRE 117
              L+    + +  SA   + + PTRELA+QV    + L      +   + +GG+++ ++
Sbjct: 257 IERLIY---KPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGGLNLRQQ 313

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDI-EFILDS 175
            + L++   IVV TPGRL DHIR     +I +L+ +V+DEAD ML+ GF+ ++ E +   
Sbjct: 314 EQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVMDEADRMLEEGFQVELTEILELI 373

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
              KR+ ++FSAT++  I  L +      VR+ +    +  S +    V +   +     
Sbjct: 374 PKHKRQTMLFSATMNTKIQDLIQLSLDKPVRIMVNPPKQAASKLVQEFVRIRKREHLKPA 433

Query: 236 VNIL-----RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +                +VF S +    R   VL     +V+ L G L+Q++R  +++  
Sbjct: 434 LLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLGMKVLELHGSLTQEQRLQSVKDF 493

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           R     V I TD+AARG+D+P +E+VI+ ++    E  LHR GRT RAGR+G S+  + +
Sbjct: 494 RSLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTARAGREGRSITFVGE 553

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
           + Q R   + ++A  S+  +   + +A+      + +++   L+SI   +K  +D +L +
Sbjct: 554 SNQDR--SIVKDAIKSLEEQK--NGKAVSRTVDWKKVEE---LNSIVESKKDTIDEVLEE 606

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRF 446
              EK+A   L+       A   +     +  R + 
Sbjct: 607 ---EKLAKEILQAEMQLEKASNIMKHEKEIHSRPKR 639


>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
          Length = 799

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 196/463 (42%), Gaps = 16/463 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ ++GY   T +Q   +   +  KDV+  ++TGSGKT AF + +   L    
Sbjct: 45  LDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPMLQKL---- 100

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL IAPTRELA+Q  +  + L   TG+  A  +GG S+  +   +     
Sbjct: 101 -KRREVNGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIEEQFGAIHEKPD 159

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL   I    L ++ ++ +V DEAD + ++GF + +  IL   P  R+ L+FS
Sbjct: 160 IIIATPGRLLHLIIEMNLRLTTVQYLVFDEADRLFEMGFSEQLHEILKRLPDNRQTLLFS 219

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR--YHGA 244
           AT+   +   AK    D V V +  + +    +    +    +D+ +A + ++R      
Sbjct: 220 ATLPKMLVDFAKAGLTDPVLVRLDVDEKISDRLSMIFLTCRTADKISAFLYLVRLAIANN 279

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  IVFC+T   V     V        V L  +L    R   ++  R  +  + I TDVA
Sbjct: 280 EMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRSKQCLLLIVTDVA 339

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+  I+       +  +HR GR  RAG+ G S  +I  +       LF    
Sbjct: 340 ARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLISADELPYLADLFLFLG 399

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             + +    S+    E        D + L+S         D L A HD  +  A   +  
Sbjct: 400 RPLNFAKPDSIYREDEPLVGVFTDDLVELES---------DFLRAIHDNCEEMADLRKKS 450

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              +       P        R + + R            +  +
Sbjct: 451 ENAMSKYSRTRPQPSAESVRRTKTELREAFAAASPHPILRRDA 493


>gi|281346401|gb|EFB21985.1| hypothetical protein PANDA_014345 [Ailuropoda melanoleuca]
          Length = 524

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 144/365 (39%), Gaps = 19/365 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 161 TFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 220

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 221 PILMHLKQPTNK-----GFRALIISPTRELANQIHRELVKISEGTGFRIHMIHKAAVAAK 275

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 276 KFGPKSSQKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLA 335

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S K RR +  +            N          A  +   +       + + 
Sbjct: 336 SIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVITVSIGARNSAAETVEQELLFVGSE 395

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 396 TGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVH 455

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG KG +V   
Sbjct: 456 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFF 515

Query: 349 PQNMQ 353
            ++ +
Sbjct: 516 TEDDK 520


>gi|261332683|emb|CBH15678.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 512

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 133/476 (27%), Positives = 221/476 (46%), Gaps = 27/476 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + +  A  E G+   T +Q A +      +D++  AQTGSGKT A+ L L +
Sbjct: 41  TFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVN 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +    +       L + PTRELA QV  +   L +  G+ VA  +GG  +  +  +
Sbjct: 101 WLLTQ----AKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACE 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VVGTPGR+ DH+       +  L A+VLDEAD+ML++ +  +I  IL+  P  
Sbjct: 157 LSRRPHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHN 216

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  I  L      D V + +  +N     +    V    +     +   L
Sbjct: 217 RQTLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYL 276

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VFC + A V R T  L     Q + L G + Q+ R+ AL   ++GR R+ +
Sbjct: 277 TRESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILV 336

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVA RG+D+P  ++V++  L    E+ +HR GRT RAG +G +V +I Q      +++
Sbjct: 337 CTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKV 396

Query: 360 FREANVSVVWEPA-----------------PSVEAIRERDAQ-RILQDPLFLDSIQGDEK 401
                V     P                   +V+ +RE D + +  ++   L + +  ++
Sbjct: 397 EASTGVKCEEWPISDGDVAAVLQRVEDAEQEAVKEMRESDQEAKFEREARQLTTARRAKR 456

Query: 402 KMVDVLLAKHDPEKIAAGF--LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
           +  D  +   D +   A F  LR+ R      +        S  ++ R+  +  K 
Sbjct: 457 ERGDNDMGYDDAKHGTADFSTLRLRREHESVFQMTKKQQHKSLWEKRREVRKQMKS 512


>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
          Length = 557

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/348 (31%), Positives = 181/348 (52%), Gaps = 5/348 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +   L   +
Sbjct: 11  FSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSH 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +         + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   L     
Sbjct: 71  SQI---VGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGNPD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL  HI   GL++  +K +VLDEAD + ++G    IE IL+S PK R+ ++ S
Sbjct: 128 IVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR     +
Sbjct: 188 ATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSH 247

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  I TD+A
Sbjct: 248 ERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           ARG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G +  +I    
Sbjct: 308 ARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRD 355


>gi|255087672|ref|XP_002505759.1| predicted protein [Micromonas sp. RCC299]
 gi|226521029|gb|ACO67017.1| predicted protein [Micromonas sp. RCC299]
          Length = 426

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 168/372 (45%), Gaps = 11/372 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F LA+   L    
Sbjct: 52  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQQLEPVP 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG--GVSVHRERRDLQNG 124
                     AL +  TRELA Q+  E E   A    V    I        ++    +  
Sbjct: 112 GEVG------ALILCHTRELAYQIKHEFERFSAYLPAVNVAVIFGGVNIKQQKAELKEKP 165

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
             I+V TPGR     +   +++      +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 166 PSIIVATPGRCKALAKDGDISLKQCGHFILDECDKMLEQLDMRADVQEIFKMTPHDKQVM 225

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K +  D + + +  E +     +    + +  ++++  + ++L   
Sbjct: 226 MFSATLSKEIRPVIKKFMNDPMEIYVDDETKLTLHGLVQHYIKLTEAEKNRKLNDLLDAL 285

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +    +   K+L E  F  +A+   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 286 MFNQVVIFVKSVQRCTYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGNKRILVATD 345

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           + ARGID+  + +VI+ ++    +  LHR GR GR G KG+++  +  +           
Sbjct: 346 LVARGIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFLSSDEDTAVLDAV-H 404

Query: 363 ANVSVVWEPAPS 374
           A   V  +  P 
Sbjct: 405 ARFEVEIKELPE 416


>gi|193652513|ref|XP_001948824.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Acyrthosiphon pisum]
          Length = 786

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/410 (25%), Positives = 185/410 (45%), Gaps = 12/410 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+ P      + L +  Y   T +Q   +   LR +D+L +A+TGSGKT+AF + +
Sbjct: 39  IEKFEHFPLSAPTLKGLKDNKYFVPTEIQRESIGYSLRGEDILGAAKTGSGKTLAFLIPV 98

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    ++++      AL I PTRELA Q+   L  +         + IGG  +  ER
Sbjct: 99  LEILYC--NKWNRTEGLAALIITPTRELAYQIFETLRKIGIHHDFSAGLIIGGKDLKFER 156

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     ++      L         + S++  +VLDEAD  LD+GF+  +  I+++ P 
Sbjct: 157 KRLDQCNIMICTPGRLLQHMDENPLFDCSNMLVLVLDEADRCLDMGFQQTMNSIIENLPP 216

Query: 179 KRRMLMFSATISPAITTLAKNY--QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           +R+ L+FSAT + ++  L +        + V+  SE+   S +    ++  L D+ + + 
Sbjct: 217 ERQTLLFSATQTKSVKDLVRLSLSNPHLISVHEDSEHSTPSGLVQSYMVCDLHDKMSLLW 276

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + ++ H     +VF S+   V  F ++L +       L+   +  +       +     +
Sbjct: 277 SFIKNHLHHKVLVFMSSCKQVKYFYEILCKLRPGTSLLALYGTMHQTKRMAVYESFSRKQ 336

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P +  V+  +   N    +HR+GRT R  + G S+ V+  +   
Sbjct: 337 RSVLFATDIAARGLDFPAVNWVVQLDCPENANEYIHRAGRTARFQKSGESLLVLLPSELA 396

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
             ++L    N  +       V   +    QR L+  L  D I  +  +  
Sbjct: 397 ILKQLE---NKKIPISEI-KVNPNKLTSIQRTLEATLAKDHILKESAQRA 442


>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
          Length = 862

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/348 (31%), Positives = 181/348 (52%), Gaps = 5/348 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               + E++   GY   T +Q       L  +DV+  A+TGSGKT  F L +   L   +
Sbjct: 11  FSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMIERLGCSH 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +         + ++PTRELA+Q  R +  L  KT +VV    GG S+ R+   L     
Sbjct: 71  SQI---VGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLSGNPD 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL  HI   GL++  +K +VLDEAD + ++G    IE IL+S PK R+ ++ S
Sbjct: 128 IVVATPGRLFHHIIEAGLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQCVLVS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+ + +K    +   + I S+      +    + V   ++  +++ +LR     +
Sbjct: 188 ATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRNTIPSH 247

Query: 247 --AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             AI+FC+T+  V    K+L  +   V  + G + Q+ R+  L   R  ++R  I TD+A
Sbjct: 248 ERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALIVTDIA 307

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           ARG+D+P ++ VI+ +   +P+  +HR+GRT RAG+ G +  +I    
Sbjct: 308 ARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRD 355


>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
          Length = 698

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 175/388 (45%), Gaps = 29/388 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + G+ N T +Q A +   L  +D++  A+TGSGKT+AF L L + +++  
Sbjct: 280 LNPEMLKAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPLLNWIISLP 339

Query: 67  DRFSPA---SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                    + P A+ +APTR+LA Q+  E        GV +   IGG S   +   L  
Sbjct: 340 QLVREQDIDNGPYAVILAPTRDLAQQIEDEANKFARPLGVRLVSVIGGHSREDQSFKLNQ 399

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  +V+ TPGRL D +    + ++    +V+DEAD MLD+GF  +++ IL+  P      
Sbjct: 400 GCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEADRMLDMGFEPEVQRILEYIPVSNMKP 459

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------------------SD 218
                    +       +    +  + +                                
Sbjct: 460 DTDEAEDQHLLAENSRNKAKYRQTVLFTATMPTSVERLARTYLRRPATVNIGVAGRAADR 519

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++ R ++++   + N +V +L        I+F + +      TK L +  ++  AL G  
Sbjct: 520 VEQRVLMLSEKQKRNELVKLLDSMEPP-VIIFVNQKKGADVLTKSLEKMGYRASALHGGK 578

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ  R  AL  ++D    + +ATDVA RGID+  + +VI+ +++ N E+  HR GRTGRA
Sbjct: 579 SQDLRERALSQLKDKTKDILVATDVAGRGIDIKGISMVINYDMAKNIEDYTHRIGRTGRA 638

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVS 366
           G  G++V  + +   +    L      S
Sbjct: 639 GSSGVAVTFLTEEDSKVFWDLKEMLKSS 666


>gi|143456603|sp|Q0JM17|RH56_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 56
 gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|215695226|dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258618301|gb|ACV83946.1| DExD box helicase protein HLA-B associated transcript 1 [Oryza
           sativa Japonica Group]
          Length = 432

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 181/370 (48%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 58  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +        AL +  TRELA Q+  E E        V      G    ++ +D    + 
Sbjct: 118 GQVG------ALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDC 171

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+MLD    R D++ I   +P  ++++
Sbjct: 172 PHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVM 231

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 232 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 291

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 292 DFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATD 351

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +   +      ++  
Sbjct: 352 LVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 411

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 412 RFEVDIKELP 421


>gi|88803174|ref|ZP_01118700.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
 gi|88780740|gb|EAR11919.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
           [Polaribacter irgensii 23-P]
          Length = 373

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 118/377 (31%), Positives = 184/377 (48%), Gaps = 15/377 (3%)

Query: 1   MKIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGL 56
           M  F  +   P  I +++ E G    T +QE  +   L+ K D +  AQTG+GKT AFGL
Sbjct: 1   MATFSALGITPAYI-KSIQELGISTPTEIQEQTIPILLKSKTDFIGLAQTGTGKTAAFGL 59

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSV 114
            +   +   ++          L ++PTREL  Q+ ++L          + +    GG  +
Sbjct: 60  PILHHIDTSSEHI------QTLVLSPTRELVQQIKKQLFKFTKYNEEKIFIEAVFGGEKI 113

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            R+  +L+   H+VV TPGRL D I    ++ISH+K VVLDEADEML +GF+ D+  IL 
Sbjct: 114 DRQIGNLKRTTHVVVATPGRLIDLIERGDIDISHVKTVVLDEADEMLSMGFKQDLNRILK 173

Query: 175 SSPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
            S +  +   L  +         +      +A RV +      +++I ++ V   L  + 
Sbjct: 174 FSSQSDRNTWLFSATMPEEIKRIIKTYMDSNAPRVEVNKNALVNANIRHQFVKTTLKTKA 233

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
           N I+  L   G +  I+FC T+A       +L E  F   AL G++ Q+ER   ++  + 
Sbjct: 234 NDIITFLEKRGTQRGIIFCRTKAGAQNLANLLIEEGFSTAALEGDMQQKERDKVMRAFKK 293

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
              +  ++TDV+ARGID+  LE VIH +L    E   HRSGRT RAG+ G S+  I  N 
Sbjct: 294 ENLQYLVSTDVSARGIDVSGLEFVIHHQLPEQLEYYTHRSGRTARAGKTGTSLAFILPNE 353

Query: 353 QRRAERLFREANVSVVW 369
             +   + +   +    
Sbjct: 354 LEKVHDIQKALQIKFTE 370


>gi|150392377|ref|YP_001322426.1| DEAD/DEAH box helicase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149952239|gb|ABR50767.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 387

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 177/372 (47%), Gaps = 14/372 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK F      + E  +  G+   T +QE  +   L  KD++  + TG+GKT+A+ + +  
Sbjct: 17  MKPF------LQETWNRVGFTAPTPIQEEAIPLILEGKDLIAESPTGTGKTLAYLIPILH 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E      + A  A+ +AP+ ELA+Q+ + +E       +     IGG ++ R+  +
Sbjct: 71  RIDPE------SKAVQAVILAPSHELAMQIHQTIEKWTKDNNISSEPLIGGANIKRQIEN 124

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    I+V T GRL + I+ K + +  +K +V+DE D ++     ++++ I+ ++ K+R
Sbjct: 125 LKKRPQIIVATTGRLLEVIKLKKIKMHEVKTIVVDEFDILIAEEHAENLKHIIKTTLKER 184

Query: 181 RMLMFSATISPAITTLAK--NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +++ FSATIS     +      +   +++     +           ++        ++  
Sbjct: 185 QIVCFSATISENTEQIGMELMKEPKIIQIQKGQSSLSTLSNIQHTYIICEHREKFEVLRK 244

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           +   G   A+VF +    +      L+ +   +  L G  ++ +R  AL   R G+  + 
Sbjct: 245 IIRSGNVKALVFTNDVRKIEEIQVKLSYNGIDLGVLMGGSNKTQRKEALNGFRMGKFPLL 304

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  L  VI+ ++    +   HRSGRTGR G  G  V ++ +  +    +
Sbjct: 305 VATDVAARGLDIEGLTHVINWDVPLTADQYTHRSGRTGRMGALGTVVSIVNKREESMFRK 364

Query: 359 LFREANVSVVWE 370
           +  E  +S   +
Sbjct: 365 ITNELEISATEK 376


>gi|170576579|ref|XP_001893687.1| RNA-dependent helicase [Brugia malayi]
 gi|158600176|gb|EDP37484.1| RNA-dependent helicase, putative [Brugia malayi]
          Length = 553

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 178/371 (47%), Gaps = 9/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQV+ + L    +   T +Q       L  +D++  A+TGSGKT AF L      + + 
Sbjct: 136 FPQVLTDMLFA-NFQKPTVIQSISWPIALSGRDMVSIAKTGSGKTFAFILPAIVHTINQP 194

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R     +P  L + PTRELA QV    +     T + +    GG     + RDL+ G  
Sbjct: 195 PRGH-QKSPSVLVLLPTRELAQQVEEVAKDYCRATDLSITCLFGGAPKATQARDLERGVD 253

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL D +     ++     +VLDEAD MLD+GF   I  ++      R+ LMFS
Sbjct: 254 IIIATPGRLMDFLEIGKTDLRRCTYLVLDEADRMLDMGFEPQIRKVVSQIRPDRQTLMFS 313

Query: 187 ATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           AT    +  LA ++  DA  +N+ S     N   + I           R  AI++ +   
Sbjct: 314 ATWPKDVRKLAMDFLTDAAHLNVGSLELSANHNITQIVEIIDESNKQQRLMAILSDIMNK 373

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+      T+ +    +  + + G+  Q ER  AL   R G+  + +ATD
Sbjct: 374 EDCKTIIFVETKRKADDLTRWMRRDGWPALCIHGDKGQSERDWALSEFRSGKTPILLATD 433

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
           VAARG+D+ D++ VI+ + S+N E+ +HR GRTGR  + G++          +A+ L + 
Sbjct: 434 VAARGLDVDDIKYVINFDYSNNSEDYVHRIGRTGRRDKTGVAYTFFTYANAPKAKDLIKV 493

Query: 362 --EANVSVVWE 370
             EAN S+  E
Sbjct: 494 LEEANQSIPPE 504


>gi|324504798|gb|ADY42068.1| ATP-dependent RNA helicase DDX41 [Ascaris suum]
          Length = 657

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 187/381 (49%), Gaps = 18/381 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P  I  +L E+  ++ T +Q   +   L  +D++  A TGSGKT+ F L L  
Sbjct: 220 MK----FPPAIIRSLREKKIISPTVIQMQGIPVVLSGRDMIGIASTGSGKTLTFALPLVM 275

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY-------AKTGVVVAVCIGG 111
             L +     F     P  L I P+RELA Q+   +E ++           + V +CIGG
Sbjct: 276 FCLEQEISLPFRHGEGPYGLIIVPSRELAKQIHDVIERIFESITIGSGFPRLRVGLCIGG 335

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           + +  + R  + G H+ V TPGRL D +  K  N+   + +VLDEAD MLD+GF ++I  
Sbjct: 336 LPIGEQARVFERGVHVAVATPGRLSDLLSKKVFNLQICRYLVLDEADRMLDMGFEEEIRT 395

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I      +R+ L+FSAT+   I   A++    A+ VN+        ++      V   ++
Sbjct: 396 IFSFFKGQRQTLLFSATMPRKIQNFARSALVRAIIVNVGRAGAASLNVLQEIEYVRADEK 455

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              I++ L+       ++F   ++ V    + L      V +L G   Q++R   +   R
Sbjct: 456 LTRILDCLQKT-PPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFR 514

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ- 350
            G   V +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G+KGM+   + + 
Sbjct: 515 RGEKDVLVATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFVNRR 574

Query: 351 ---NMQRRAERLFREANVSVV 368
              ++ +    L  EA   + 
Sbjct: 575 ADMSVLQDLRALLLEAGQQLP 595


>gi|312084719|ref|XP_003144390.1| ATP-dependent RNA helicase DDX18 [Loa loa]
 gi|307760447|gb|EFO19681.1| ATP-dependent RNA helicase DDX18 [Loa loa]
          Length = 549

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/431 (23%), Positives = 191/431 (44%), Gaps = 19/431 (4%)

Query: 2   KIFENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++  ++ +    A++E G++ +T +Q   + P L+ +DVL SA+TGSGKT+AF + 
Sbjct: 65  TTFASLESILSKPTLLAIAEMGFIKMTEIQAKCIEPLLQGRDVLASAKTGSGKTLAFLVP 124

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               L+     + P +    + I+PTREL++Q    L  +  K   +    I G +  + 
Sbjct: 125 AVELLV--KLEWKPRNGTGVIVISPTRELSMQTYGVLSEILEKHPALTHGLIMGGANRQT 182

Query: 118 --RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             ++  +  + +V      L          + +LK +++DEAD +LD+GF  +++ IL  
Sbjct: 183 EAQKLARGVSFLVATPGRLLDHLQNTDDFMVKNLKCLIIDEADRILDIGFEIEMQQILRV 242

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--------DYRAVLVA 227
            PKKR+ + FSAT +  +  L K            +E    +              V+  
Sbjct: 243 LPKKRQTMFFSATQTSKVDELIKAALHSDPVRIGINEVNLKNGNELATVSGLQQGYVVCP 302

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              R   +   L+ +  K  +VF S+  SV    ++L      V  + G+  QQ+R+   
Sbjct: 303 SEKRFLLLFTFLKRNRDKKVMVFFSSCNSVKYHHELLNYIDISVQCIHGKQKQQKRTCTF 362

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVF 346
                 ++   + TDVAARG+D+P ++ ++  +    P   +HR GRT R     G ++ 
Sbjct: 363 FSFCQAKSGTLLCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTARGVTGTGHALL 422

Query: 347 VIPQNMQRRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           ++         R  + A V +  +E + S  A  +   +++++   +L+    +  K   
Sbjct: 423 ILRPEELGFL-RYLKHAKVVLNEYEFSWSKIANIQSQLEKLIEQNYYLNKSAKEAYKCYI 481

Query: 406 VLLAKHDPEKI 416
                H  + I
Sbjct: 482 RAYDSHSLKSI 492


>gi|71020871|ref|XP_760666.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
 gi|74700620|sp|Q4P5U4|DBP4_USTMA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|46100168|gb|EAK85401.1| hypothetical protein UM04519.1 [Ustilago maydis 521]
          Length = 869

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 173/360 (48%), Gaps = 9/360 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +P        L   GY ++T +Q   L+  L+ KDVL +A+TGSGKT+AF + +
Sbjct: 57  LKQFTQLPLSDRTCRGLKRAGYTDMTDIQAKSLSLSLKGKDVLGAARTGSGKTLAFLIPV 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++ P+    AL I+PTRELA+Q+   L  + +       + IGG  V +E+
Sbjct: 117 LEILY--RRKWGPSDGLGALVISPTRELAIQIFEVLRKIGSYHTFSAGLVIGGKDVKQEK 174

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     ++      L    +  G + S+++ +VLDEAD +LD+GF   +  I+++ P+
Sbjct: 175 DRLSRINILIATPGRLLQHMDQTLGFDTSNVQVLVLDEADRILDMGFSRTLNAIVENLPR 234

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
            R+ ++FSAT +  +  LA+   +D   V +     +           +LV L  + + +
Sbjct: 235 NRQTMLFSATQTKRVKDLARLSLQDPEYVAVREPENEGCTPRGLEQHYMLVELEKKLDLL 294

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + +R H    A+VF S+   V    +   +    V  ++    Q++             
Sbjct: 295 FSFIRTHTKCKALVFMSSCRQVQFVHETFCKLRPGVSLMALHGKQKQAKRLQIFTQFTKT 354

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  +  ATD+AARG+D P ++ VI  ++  + +  +HR GRT R   KG S+  +    +
Sbjct: 355 QHALLFATDIAARGLDFPAVDWVIQLDVPEDVDTYIHRVGRTARYTAKGNSLLFVLPTQK 414


>gi|290958777|ref|YP_003489959.1| RNA helicase [Streptomyces scabiei 87.22]
 gi|260648303|emb|CBG71414.1| putative RNA helicase [Streptomyces scabiei 87.22]
          Length = 446

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/360 (33%), Positives = 180/360 (50%), Gaps = 5/360 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +      
Sbjct: 28  LPGRLLETLRAEGVTTPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR--TAG 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA 
Sbjct: 86  QRAEPRQ-PLALVLVPTRELAQQVTDALTPYARALRLRLATVVGGMSIGRQASALRGGAE 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD      + L+FS
Sbjct: 145 VVVATPGRLKDLIDRADCRLDQVAITVLDEADQMADMGFMPQVTALLDQVRPGGQRLLFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L ++Y  D V  ++       + +D+  + +   D+               
Sbjct: 205 ATLDRNVDRLVRDYLHDPVVHSVDPSAGAVTTMDHHVLHIEDDDKHATTTE--IAAREGR 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  ++ +  R  K L     +  AL G  SQ +R+ AL   +DG     +AT+VAAR
Sbjct: 263 VIMFLDSKHATDRLVKKLLAVGVRAAALHGGKSQSQRNRALSQFKDGDVTALVATNVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + DL+LV++ +   + ++ LHR GRT RAG  G  V ++  + +R   RL   A ++
Sbjct: 323 GIHVDDLDLVVNVDPPGDHKDYLHRGGRTARAGESGTVVTLVLPHQRRDVTRLMAVAGIT 382


>gi|255589747|ref|XP_002535074.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223524093|gb|EEF27309.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 465

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 132/336 (39%), Positives = 186/336 (55%), Gaps = 5/336 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A++E GY   T++Q A +   LR +DVL +AQTGSGKT AF L L  +LL   
Sbjct: 10  LAPSLLNAIAEIGYDEPTAIQRAAIPAILRGEDVLGAAQTGSGKTAAFALPLLQSLLDNR 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNG 124
           D          L + PTRELAVQVG  +  L +   +   VA+  GGVS++ +   L+ G
Sbjct: 70  DGPRQLHG---LVLVPTRELAVQVGESIRKLVSHLSMPVKVAIVFGGVSINPQMMALRGG 126

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D I    L IS    +VLDEAD +LDLGF +++  IL   PK+R+ L 
Sbjct: 127 ADIVVATPGRLLDLIDHNALKISRAAMLVLDEADRLLDLGFSEELNRILALLPKQRQNLF 186

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PA+  LA +      R+ + SE     DI  RA+ V +  R   + ++++ H  
Sbjct: 187 FSATFPPAVQKLADSILHQPARIEVLSEPASKPDIVQRAIAVDVPRRTMLLKHLIQEHQW 246

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF +T+ +       L  +  +  +  GELSQ  R+  L   R GR +  +ATDVA
Sbjct: 247 RGVMVFVATKYAADHVADKLNRNGIRAASFHGELSQGARTETLTDFRSGRLQALVATDVA 306

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ARGID+  L  V++ +L  +  +  HR GRTGRA R
Sbjct: 307 ARGIDIARLPAVVNYDLPRSAVDYTHRIGRTGRAAR 342


>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase domain-containing protein [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 455

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 194/380 (51%), Gaps = 8/380 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++      AL   G+ + T +Q   + P L  KDV+ +A TG+GKT AF L L       
Sbjct: 10  HLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLI------ 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            DR +      AL +APTRELA+Q+G ELE       V  AV IGGV + ++   L+   
Sbjct: 64  -DRLAGKPGTRALVLAPTRELALQIGEELERFGHARRVRGAVIIGGVGMAQQAEALRQKR 122

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IV+ TPGRL DH+      +  ++A+VLDEAD MLD+GF+  ++ IL   PK+R+ L+F
Sbjct: 123 EIVIATPGRLVDHLEQGNARLDGIEALVLDEADRMLDMGFKPQLDRILRRLPKQRQTLLF 182

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  +   A+ + +D VRV +A      +  + +  L    ++   ++ +       
Sbjct: 183 SATMAGEVADFARAHLRDPVRVEVARSGTTAARAEQQVFLADQHEKLPLLLTL-LERDGD 241

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + ++F  T+    +  K +     +V  +  + SQ +R  AL   +DG  RV +ATD+AA
Sbjct: 242 STLIFTRTKRRADKIWKHIGRAGHKVARIHADRSQAQRRMALDGFKDGTYRVLVATDIAA 301

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+ ++  V++ +L   PE+ +HR GRT RA   G +      + +     + R    
Sbjct: 302 RGIDVAEIGHVVNFDLPHVPEDYVHRVGRTARAAASGRASSFSAPDERDLLHAIERLTRA 361

Query: 366 SVVWEPAPSVEAIRERDAQR 385
            +   P P      + + +R
Sbjct: 362 VLPRAPVPRDAETFQSELKR 381


>gi|114049936|emb|CAK50953.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
 gi|114050158|emb|CAK51191.1| putative DEAD-box RNA helicase [Streptomyces ambofaciens]
          Length = 499

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 120/364 (32%), Positives = 185/364 (50%), Gaps = 7/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 71  FADLDMPRELLAALGSQGVAVPFPIQSATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R + A  PL L + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 131 ---TAKRRAEARQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQASAL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IVV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 188 RGGAEIVVATPGRLKDLITRGDCRLDQVAVTVLDEADQMADMGFMPQVTALLDQVRPEGQ 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 248 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTEIA 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   +DG   V +AT
Sbjct: 306 ARDGRVLMFLDTKHAVDRLTEHLLNSGVRAAALHGGKSQPQRTRTLTQFKDGHVSVLVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   RL  
Sbjct: 366 NVAARGIHVDSLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMTRLMA 425

Query: 362 EANV 365
            A +
Sbjct: 426 TAGI 429


>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
          Length = 818

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 171/355 (48%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   + ++GY   T +Q   +   +  +DV+  A+TGSGKT AF + +   L + +
Sbjct: 43  LSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPMLEKLKSHS 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA Q  + ++ L  +T + VA+ +GG ++  +   +     
Sbjct: 103 AKV----GIRALVMSPTRELAEQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHANPD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGR    +    L++  ++ VV DEAD++ + GF + ++ IL   P+ R+ L+FS
Sbjct: 159 VIVATPGRFLHLLVEMELSLKAVEYVVFDEADQLFEKGFEEHLKEILMRLPEDRQTLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGA 244
           AT+   +   A+   K    V + ++ +    +  + V    +D+      +        
Sbjct: 219 ATLPKKLIEFARAGLKQPTLVRLDADTKLSEQLRTQYVHCRRADKPAGLIYLLTNVIPRG 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           K  +VF ST+  +     +L           G L    R   +   R G+ ++ + TDVA
Sbjct: 279 KLTVVFVSTKHLIEYLKVLLEALQIPCTYSYGNLDPTARKINIAKFRAGKVKLLLVTDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARGID+P L+ V++ +    P+  +HR GR  RAGR G +  ++  +       L
Sbjct: 339 ARGIDIPMLDYVVNYDFPRRPKLFVHRVGRVARAGRSGTAYSLVAVDEVAHLIDL 393


>gi|256088378|ref|XP_002580316.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665869|emb|CAZ36555.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 730

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 201/419 (47%), Gaps = 40/419 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STL 62
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L      L
Sbjct: 306 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 365

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 366 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 425

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------ 176
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL         
Sbjct: 426 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 485

Query: 177 -------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 486 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 545

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL        I+F + +       K L +  +  V L G 
Sbjct: 546 RVEQIVYMVSEQEKRRKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGYSAVVLHGG 605

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 606 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 665

Query: 338 AGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPA---------PSVEAIRERDAQ 384
           AG+ G+++ ++ +         ++L  ++ VS               P + A ++R A+
Sbjct: 666 AGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGILAAKKRRAE 724


>gi|226365826|ref|YP_002783609.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
 gi|226244316|dbj|BAH54664.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
          Length = 534

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 124/377 (32%), Positives = 186/377 (49%), Gaps = 11/377 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     +  AL E G     ++QE  L   L   D++  A+TG GKT  FG+ L  
Sbjct: 39  TFAELGVRDEVVRALDEIGIERTFAIQELTLPLALAGDDLIGQARTGMGKTFGFGVPLLH 98

Query: 61  TLLAENDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVA------VCIGGVS 113
            + +     +     P AL I PTREL +QV ++LE                    GG  
Sbjct: 99  RISSGTTGTAALDGTPRALVIVPTRELCIQVTKDLEGAAKYLKGEKNKPLEVLAIYGGRP 158

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
              +   LQ GA +VVGTPGRL D      L +  ++ +VLDEADEMLDLGF  DIE IL
Sbjct: 159 YETQIATLQKGADVVVGTPGRLLDLANQGHLILGKVEVLVLDEADEMLDLGFLPDIERIL 218

Query: 174 DSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           +  P KR+ ++FSAT+   I T       Q   +R   A ++  H             D+
Sbjct: 219 NMVPDKRQTMLFSATMPGPIITLARTFLTQPTHIRAEQADDSAVHDRTSQHIYRAHALDK 278

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              +  +L+  G    ++F  T+ +  + +  LAE  F V ++ G+L+Q  R  AL+  R
Sbjct: 279 AEMVARVLQADGRGATMIFTRTKRTAQKVSDELAERGFAVGSVHGDLNQVAREKALKAFR 338

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +
Sbjct: 339 SGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGIAVTLVDWD 398

Query: 352 MQRRAERLFREANVSVV 368
              R + + +   + + 
Sbjct: 399 DIPRWQLIDKALGLGIP 415


>gi|281204091|gb|EFA78287.1| putative RNA helicase [Polysphondylium pallidum PN500]
          Length = 837

 Score =  168 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 164/369 (44%), Gaps = 8/369 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P      +AL    +  +T +Q A +   L  +DVL +A+TGSGKT+AF + +   
Sbjct: 98  FKDLPISAKSIQALEWGKFNKMTDIQRAAIPHALCGRDVLGAAKTGSGKTLAFIVPMLEL 157

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L   N  ++      A+ +APTRELA+Q+   L            + IGG  V  E++ +
Sbjct: 158 LWRNN--WTENDGVGAIILAPTRELAIQIFEVLRIAGKTHSFSAGLIIGGKDVAGEKKKI 215

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L       G   S+L+ ++LDEAD +LD+GF   +  I+ + PK R+
Sbjct: 216 GTMNILIATPGRLLQHMDETDGFQCSNLQMLILDEADRILDMGFSKSLNAIISNLPKARQ 275

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + +I           + + V    +     ++     + AL  + + + + +
Sbjct: 276 TLLFSATQTKSIKDLARLSLKDPEYISVYDKDQVSTPKNLQQTICVTALDKKIDLLYSFI 335

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           + H     IVF ST   V    ++                 ++ +     Q         
Sbjct: 336 KTHLTSKTIVFLSTCKQVRFMYEMFKLCNPGCRLFQLHGKMKQWTRLEVFQNFSHFSEGT 395

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATDVAARG+D P+++ V+  +   + +  +HR GRT R  + G S  V+  + +    
Sbjct: 396 LFATDVAARGLDFPEVDWVVQMDCPEDIQTYIHRVGRTARYHQGGKSFTVLLPSEKEEFT 455

Query: 358 RLFREANVS 366
           +L  +  + 
Sbjct: 456 KLMDKQKIK 464


>gi|322701372|gb|EFY93122.1| ATP-dependent RNA helicase [Metarhizium acridum CQMa 102]
          Length = 434

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 177/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   L   D++  A++G GKT  F LA    +   N
Sbjct: 57  LKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVN 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          +            +     ++  
Sbjct: 117 GEVS------VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKD 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD-DIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD      D++ +  ++P +++
Sbjct: 171 TCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT++  I  + + + ++     +  + +       +  +     +++  +  +L 
Sbjct: 231 VMMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++ + R+C+A
Sbjct: 291 ELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TDV  RGID+  + L I+ +L ++  + LHR GR GR G KG+++  +  +  Q   + +
Sbjct: 351 TDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLKEI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   V+A
Sbjct: 411 EKRFEVALPEFPKEGVDA 428


>gi|303277179|ref|XP_003057883.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460540|gb|EEH57834.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 532

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 105/361 (29%), Positives = 174/361 (48%), Gaps = 9/361 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  ++   +  A+  +GY   T +Q   +   L   DV+  A+TGSGKT AF + +   
Sbjct: 82  FEAMDLLPDVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVLHK 141

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L A     S  +   A+ ++PTRELA+Q  +  + L   T +     +GG S+  +  DL
Sbjct: 142 LRAH----SLKAGARAIVLSPTRELALQTFKFAQELSKFTDLRCVCIVGGDSMEAQFEDL 197

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                + V TPGRL  H+          ++ VVLDEAD +L++GF D +  I+      R
Sbjct: 198 ATNPDLYVATPGRLLHHVEEIDGLTIRSVQHVVLDEADRLLEMGFSDQLRDIMRQVSDVR 257

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +    +   +D   + + +E +   D+    V+    ++   ++ ILR
Sbjct: 258 QTLLFSATMPSQLAEFVRVGLRDPQVIRLDAEMKISDDLRLSFVVTRADEKIPMLLYILR 317

Query: 241 YHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 +  +VF +TR  V     VL E   +  A+ G +    R   +   R  ++ V 
Sbjct: 318 EVIPDKQQTVVFTATRHHVELLMAVLEEEGVKCSAVYGSMDMAARKINIGKFRARKSEVL 377

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+P L+ V++ +    P+  +HR GR  RAGR G++  ++ +        
Sbjct: 378 VVTDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRSGVAHSILTKEEMGFLVD 437

Query: 359 L 359
           L
Sbjct: 438 L 438


>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
 gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
          Length = 807

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 212/465 (45%), Gaps = 26/465 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+N+   + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + +  
Sbjct: 294 SFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTAAFIVPILE 353

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL    +   +       + PTRELAVQ       L   T +     +GG S+  +   
Sbjct: 354 RLLYRPRKVPTSR---VAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENI 410

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+    +++ TPGR  DH+R      +  L+ ++LDEAD ML+ GF +++  IL + PK 
Sbjct: 411 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKS 470

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIV 236
           R+ ++FSAT++ ++  L +      +R+ + S+ +    +              R   ++
Sbjct: 471 RQTMLFSATMTSSVDKLIRVGLNKPIRLMVDSKKQTVGTLVQEFVRLRPGREDKRLAYLM 530

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            + +       IVF   +    R   V      +   L G +SQ++R  +++  RDG+  
Sbjct: 531 FLCKTVYTSRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRDGKVS 590

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  
Sbjct: 591 YLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK-- 648

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
                     VV E   +  A   +   R++   +   + + +     ++ +VL  + + 
Sbjct: 649 ----------VVKEAVKAGRAQGAKIVSRVIDPAMADKWAEQVNDLATEVEEVLQEEKEE 698

Query: 414 EKIAAGFLRIHRAG--LCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           +++A   +++ R    +   +EI      +  +  +D   + K G
Sbjct: 699 KQLAQAEMQVTRGKNLIGHQDEIMSRPKRTWFESEKDKRESKKRG 743


>gi|182419538|ref|ZP_02950787.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237668934|ref|ZP_04528918.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376573|gb|EDT74148.1| ATP-dependent RNA helicase [Clostridium butyricum 5521]
 gi|237657282|gb|EEP54838.1| dead/deah box helicase domain protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 408

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/377 (25%), Positives = 185/377 (49%), Gaps = 11/377 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   I E L ++G  + TS+Q   + P +  KDV+  A TGSGKT+A+ L +
Sbjct: 1   MTTFNDLNLDSNIIEGLKKQGITDPTSIQATAITPAMENKDVIGEAFTGSGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---VVVAVCIGGVSVH 115
              +              A+ +APT ELA+Q+  +++ L   +       +V       +
Sbjct: 61  FHKIDTSKREM------QAIVLAPTHELALQIEAQIKLLAENSSVPVTSFSVIGDVNINN 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + ++  +   HI+VG+ GR+ D IR K +    +K +V+DE D +LD       + I+ +
Sbjct: 115 QIKKLKEIKPHIIVGSTGRILDLIRKKKITAHTIKTIVIDEGDNLLDPKRAQITKDIIKT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R++L+FSA+I P      +   K+ V +    +   + +I++   +    D+   +
Sbjct: 175 TMRDRQLLVFSASIKPETLLTCERLMKEPVIIKSEEKAEMNPNIEHMLFVCDRRDKFETL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             I+     + AIVF ++   +   T  L  H     A++G +S+++R  A++  R+G+ 
Sbjct: 235 RKIIVAAKPEKAIVFVNSNEDIEMTTAKLNFHSKDCFAMNGHISKEDRKLAIESFRNGKI 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ +++DV ARG+D+  +  + H +L       LHR+GRT R    G+S+ +        
Sbjct: 295 KILVSSDVTARGLDVEGVTHIFHLDLPLKVNEYLHRAGRTARGNNTGISIAIATVKQLNI 354

Query: 356 AERLFREANVSVVWEPA 372
            ++  +E N+    + A
Sbjct: 355 IKKYEKEFNIKFEEKEA 371


>gi|167533121|ref|XP_001748241.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773361|gb|EDQ87002.1| predicted protein [Monosiga brevicollis MX1]
          Length = 473

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/471 (20%), Positives = 171/471 (36%), Gaps = 20/471 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++     +        +   T+VQ+A +   L ++DV  +A+TGSGKT AF L +  
Sbjct: 2   SFEDLKLSSWLIRQCRNLNFTRPTAVQQACVPAILNDEDVYAAAKTGSGKTAAFALPILE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           A+ + PTRELA Q+  + + L    GV VA  +GG+   ++  +
Sbjct: 62  QLSHDP------YGVYAVVLTPTRELAFQISDQFQSLGKPIGVRVATIVGGIDSIKQAVE 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L    HI+V TPGRL  H          L        +E L       ++ + +      
Sbjct: 116 LSRRPHIIVATPGRLAVHTLV-------LDEADRLMTNETLQGHLDVILDALPEERQNLL 168

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
                    S  I+            +   +                       I+  L 
Sbjct: 169 FSATLLEEPSGKISQQLHRDLFRYSEIKEEATVTTLRQRYVFLPAHMRFPYLIHILRQLH 228

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARVC 298
                + ++F  T          L E   +  AL  +    +++   AL   +     + 
Sbjct: 229 DDKNNSIVLFVPTCRLCEELALTLRELDLRCTALHSQARMSQKARLDALHKFKSSFIHIL 288

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVA+RG+D+P +  VI+  +   PE+ +HR GRT RAGR GM++ ++ +      + 
Sbjct: 289 LATDVASRGLDIPTVTYVINYNVPRAPEDYVHRVGRTARAGRGGMAITLMDERDIELLQA 348

Query: 359 LFREANVSVV-WEPAPSVEAIRERDAQRILQDPLFLDSIQG--DEKKMVDVLLAKHDPEK 415
           +    NV +  ++     E ++  +   I +    L  ++   DE+        K     
Sbjct: 349 IEEHINVKLTAYDDIKDEEIVQSMNKINIARRAAELQLLESGFDERLQARKAKLKLMLAN 408

Query: 416 IAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
           + A       A        +    +    R +    +      +      S
Sbjct: 409 LCAQLASRKAAANDDESAGSEDQTMPPGKRTKGQKSSKSASQPATPKTGAS 459


>gi|256985213|ref|NP_084372.2| probable ATP-dependent RNA helicase DDX52 [Mus musculus]
 gi|56206921|emb|CAI25508.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
 gi|74225794|dbj|BAE21716.1| unnamed protein product [Mus musculus]
 gi|148683781|gb|EDL15728.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 160/384 (41%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 223 PILMQLKQPTNK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAK 277

Query: 117 ER---RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--- 170
           +       +    +               G+++++++ +V+DE+D++ + G     E   
Sbjct: 278 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLA 337

Query: 171 --FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +SPK RR +  +            N          A  +   +       + + 
Sbjct: 338 SIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSE 397

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 398 TGKLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 457

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 458 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFF 517

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 518 TEDDKPLLRSVANVIQQAGCPVPE 541


>gi|74177868|dbj|BAE39019.1| unnamed protein product [Mus musculus]
          Length = 595

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 160/384 (41%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 223 PILMQLKQPTNK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAK 277

Query: 117 ER---RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--- 170
           +       +    +               G+++++++ +V+DE+D++ + G     E   
Sbjct: 278 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLA 337

Query: 171 --FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +SPK RR +  +            N          A  +   +       + + 
Sbjct: 338 SIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSE 397

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 398 TGKLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 457

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 458 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFF 517

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 518 TEDDKPLLRSVANVIQQAGCPVPE 541


>gi|26348749|dbj|BAC38014.1| unnamed protein product [Mus musculus]
          Length = 579

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 160/384 (41%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 223 PILMQLKQPTNK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAK 277

Query: 117 ER---RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE--- 170
           +       +    +               G+++++++ +V+DE+D++ + G     E   
Sbjct: 278 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLA 337

Query: 171 --FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +SPK RR +  +            N          A  +   +       + + 
Sbjct: 338 SIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSE 397

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 398 TGKLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 457

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 458 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFF 517

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 518 TEDDKPLLRSVANVIQQAGCPVPE 541


>gi|309360296|emb|CAP31774.2| CBR-GLH-1 protein [Caenorhabditis briggsae AF16]
          Length = 817

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 165/371 (44%), Gaps = 23/371 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + + + +   GY   T +Q+  L       D++  AQTGSGKT AF L + S
Sbjct: 397 TFEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMS 456

Query: 61  TLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L  E+D  +       P  + + PTRELA Q+  E      +T + +    GG++V   
Sbjct: 457 RLTDESDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 516

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDSS 176
           +  ++ GA IVVGT GR+        + +   +  VLDEAD M+D     DDI  I+   
Sbjct: 517 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 576

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDR 231
              ++    +   S       +   ++ +R + +          +  +        + D+
Sbjct: 577 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 636

Query: 232 DNAIVNI------------LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            + ++ +                  K  IVF + RA       VL+      + + G   
Sbjct: 637 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 696

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR G
Sbjct: 697 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 756

Query: 340 RKGMSVFVIPQ 350
             G +   I +
Sbjct: 757 NSGRATSFIEE 767


>gi|33603341|ref|NP_890901.1| ATP-dependent RNA helicase DbpA [Bordetella bronchiseptica RB50]
 gi|33577465|emb|CAE34730.1| probable ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 462

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            G+  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L           AP A
Sbjct: 22  LGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNR------LAPQA 75

Query: 78  LAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           L + PTRELA QV +EL  L      V V    GG +   +   L  G H+VVGTPGR+ 
Sbjct: 76  LVLCPTRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQ 135

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           DH+    L++S L  +VLDEAD M+D+GF DDI  I    P +R+ L+FSAT    I  L
Sbjct: 136 DHLARGSLDLSTLNTLVLDEADRMVDMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKL 195

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
           +  + ++   +         S I+     +    R +A+  +L +    + + FC+T+  
Sbjct: 196 SARFLRNPAEI-KVEAQHDASRIEQLFFEIDEGQRLDAVAALLAHFRPASTLAFCNTKIR 254

Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
                + L        AL+G+L Q+ER   L    +    V +ATDVAARG+D+ +L  V
Sbjct: 255 SHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAV 314

Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           I+ +++ + E  +HR GR+GR  +KG+++ +      R A  + +     + W    S+ 
Sbjct: 315 INVDVTKDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLR 374

Query: 377 AIRERDAQRILQDPLFLDSIQGDEKKMVD 405
                 + R L+ P+    IQG +K  + 
Sbjct: 375 P----KSDRPLRAPMITLCIQGGKKDKLR 399



 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R E L + AN S     A  V A R  D Q +        +   +          +
Sbjct: 277 EQRERDEILIQFANQSCAVLVATDVAA-RGLDIQNLGAVINVDVTKDTEVHVHRIGRSGR 335

Query: 411 HDPEKIAAGFLR---IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            D + +A        +  A L    +  P+             R  +             
Sbjct: 336 GDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRA---------PMI 386

Query: 468 WFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDLLRR 523
              +  G K K     L+  L    G+  + +G I +     +V    +V+      L  
Sbjct: 387 TLCIQGGKKDKLRPGDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSN 446

Query: 524 TVKLDKGIQLKYL 536
           +    +  ++++L
Sbjct: 447 SNIKGRRFRMRFL 459


>gi|242133498|gb|ACS87799.1| putative ATP-dependent RNA helicase [Crithidia sp. ATCC 30255]
          Length = 885

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 174/381 (45%), Gaps = 13/381 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            + F  + + + +A+ ++G+   T +Q   + P L+  DV+  A+TGSGKT AF + +  
Sbjct: 92  FQTF-GLDKPLLDAILKQGFTVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLY 150

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A     S       L ++PTREL++Q+      L     +  A  +GG S+ ++   
Sbjct: 151 HLKAH----SKMVGIRGLVLSPTRELSLQILHNGFALNKFMDLRFAAVVGGDSLDQQFEL 206

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L +   +VV TPGRL   +    L+++ ++ +VLDEAD + +LG +  I  I+   P+  
Sbjct: 207 LASNPDLVVATPGRLLHIMEEASLHLTAVRCLVLDEADRLFELGLQPQIGAIMQKIPESC 266

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-------- 232
           +  +FSAT+   +         + V + + +E +    +   A LV   ++         
Sbjct: 267 QRALFSATMPSVLAEFTSAGLHNPVIIRLDAEMKLSDQLKQSAFLVRNDEKIAALIVLLK 326

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +           A++F  ++  V     VL  +      + G++ Q+ R  A++    
Sbjct: 327 RVMHVGEAAMNNAQALIFVESKFHVEFLQMVLTAYDISASGVHGQMDQEARRLAVRSFAK 386

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
               V + TDVAARG+DLP L+ V++     NP+  +HR GR  RAGR G +  ++    
Sbjct: 387 RETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTFED 446

Query: 353 QRRAERLFREANVSVVWEPAP 373
                 L +     +   P P
Sbjct: 447 FPYYVDLMQFIGRPLQSAPTP 467


>gi|22330935|ref|NP_187583.2| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|75328099|sp|Q84TG1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57
 gi|29028778|gb|AAO64768.1| At3g09720 [Arabidopsis thaliana]
 gi|110742885|dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana]
 gi|332641282|gb|AEE74803.1| DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana]
          Length = 541

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 151/367 (41%), Gaps = 15/367 (4%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +K F  +         I   L+E G+   T +Q   +   L  ++    A TGSGKT AF
Sbjct: 136 LKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAF 195

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L     +        A+ ++P RELA Q  RE + L   +   + +    +  
Sbjct: 196 ICPMLIKL-----KRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVK 250

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L     I      +    I+ K +++S ++ +VLDE+D++ +      I+ ++ 
Sbjct: 251 TADFSKLWCDVLISTPMRLKRA--IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+  ++  LA++   DAVRV I  +N     +  +     +   + 
Sbjct: 309 ACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKL 368

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++         L     +   +  +L   ER NA+   R 
Sbjct: 369 LALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 428

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V IATDV ARG+D   +  VI+ +   +    +HR GR+GRAGR G ++    +  
Sbjct: 429 GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 488

Query: 353 QRRAERL 359
                 +
Sbjct: 489 VPFLRNI 495


>gi|301122737|ref|XP_002909095.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
           T30-4]
 gi|262099857|gb|EEY57909.1| ATP-dependent RNA helicase dbp4, putative [Phytophthora infestans
           T30-4]
          Length = 524

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 164/379 (43%), Gaps = 12/379 (3%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  P  +     L   G+   T +Q   L   L  +DVL +A+TGSGKT+AF L +  
Sbjct: 60  SFDLFPLSEASRRGLRTCGFTAPTKIQVGSLPHALAGRDVLAAAKTGSGKTLAFLLPVLE 119

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R+S      AL IAPTRELA+Q+   L  +         + IGG +   E+  
Sbjct: 120 KLF--RLRWSVEDGLGALVIAPTRELALQIFEVLRNVGKAHAFSAGLVIGGKNFREEQLR 177

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L     ++      L    +    + S+L+ +VLDEAD +LDLGF+  +  IL+  P   
Sbjct: 178 LIRMNLLICTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAG 237

Query: 181 RMLMF----SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
                    + T S          + + V V+  S N     +    V+  L  + + ++
Sbjct: 238 ERQTMLFSATQTKSVKDLAALSLREPEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLL 297

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + ++ H  +  IVF ST   V     V  +    +   +     ++           +  
Sbjct: 298 SFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKP 357

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
           A V  ATD+AARG+D P ++ V+  +   +  N +HR GRT R  ++G ++  ++P  + 
Sbjct: 358 AAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVD 417

Query: 354 RRAERLFREANVSVVWEPA 372
              +RL  +A V +     
Sbjct: 418 GMMKRLE-DAKVPIRETKL 435


>gi|302520727|ref|ZP_07273069.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
 gi|302429622|gb|EFL01438.1| ATP-dependent RNA helicase [Streptomyces sp. SPB78]
          Length = 518

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 203/436 (46%), Gaps = 9/436 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G  +   +Q A +   L  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 88  LPENIVRKLTQNGVTSPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLASL---A 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G  
Sbjct: 145 GGFTDKKKPRGIILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMSNQIYALERGVD 204

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 205 ILVATPGRLRDLINRGACSLEKVRIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLFS 264

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  D +   + +     + + +  ++V   D+    V          
Sbjct: 265 ATLENEIDALVKRYLVDPIAHEVDAAQGAVTTMSHHILIVKPRDKAP--VTAAIASRKGR 322

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 323 TIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNVLVATDVAAR 382

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 383 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 442

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A+ + +   I       +     E        A+ + E +     R  R 
Sbjct: 443 AARHQIGS--AVFDAELAEITGARSMTEV--QAESAGQSAKQAEREVEDLTRELERAKRR 498

Query: 427 GLCAPEEITPVSLVSG 442
                 E   +     
Sbjct: 499 ASEYRAEADRLVPARR 514


>gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|75320875|sp|Q5JK84|RH15_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 15
 gi|57899408|dbj|BAD88055.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|57900053|dbj|BAD88115.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
           Group]
 gi|113532829|dbj|BAF05212.1| Os01g0550000 [Oryza sativa Japonica Group]
 gi|215768539|dbj|BAH00768.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218188434|gb|EEC70861.1| hypothetical protein OsI_02373 [Oryza sativa Indica Group]
          Length = 432

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 181/370 (48%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 58  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +        AL +  TRELA Q+  E E        V      G    ++ +D    + 
Sbjct: 118 GQVG------ALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDC 171

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+MLD    R D++ I   +P  ++++
Sbjct: 172 PHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVM 231

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 232 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 291

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 292 DFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATD 351

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +   +      ++  
Sbjct: 352 LVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 411

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 412 RFEVDIKELP 421


>gi|317495429|ref|ZP_07953798.1| DEAD/DEAH box helicase [Gemella moribillum M424]
 gi|316914488|gb|EFV35965.1| DEAD/DEAH box helicase [Gemella moribillum M424]
          Length = 443

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 188/388 (48%), Gaps = 13/388 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE     + + +A+ +  + N T +QE + +P L+ K+++  +QTGSGK+ +F L + 
Sbjct: 4   KSFEQYKFNEFVNKAIVDLKFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
           S L  E  +        ++ +APTREL+ Q+      +   +   + + +CIGG  ++R+
Sbjct: 64  SKLNVEKKK------TQSIILAPTRELSRQLYDMAVHIAEFSEDDIKITLCIGGQDLNRD 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              + N  HI++GTP R+ +  R   L I  ++ +V+DE D M+DLGF +DI+ I   + 
Sbjct: 118 IERVSNAPHIIIGTPTRVLELDRASALAIKEVETLVIDECDMMIDLGFMEDIDKISKRTA 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + L+FSATI           +       I  +N +   I+Y  +    S R   +  
Sbjct: 178 ENCQFLVFSATIP--TQMNHFLKKYLKNAQYIEVDNAKFGKIEYILIPEKSSTRLEKLYE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I        A++F + +  V   +  L      V  L G+L+ +ER    + + +     
Sbjct: 236 ITTVINPYLALIFANKKTEVEEVSNYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+D+ +RGID+  +  VI+  + ++ +  +HR+GRTGRAG  G  + +     + + +
Sbjct: 296 VVASDLMSRGIDIEGVSHVINYNIPNDLDFFIHRAGRTGRAGLNGDCITIYNNKDEEKLQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            +     +    +   + E I  +D  +
Sbjct: 356 -ILESRGIEFNHQDIKNGEFIETKDRNK 382


>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 442

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 179/374 (47%), Gaps = 4/374 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             + E L    Y   T++Q   +   L  KDVL  A TGSGKT AF L +   +     R
Sbjct: 32  PELLETLKLLSYTTPTAIQSHTIPAVLNGKDVLGGAITGSGKTAAFALPIIQKIAQAKPR 91

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYA--KTGVVVAVCIGGVSVHRERRDLQNGAH 126
               +   +L + PTRELA QV           K  +      GGVS + +   L+ GA 
Sbjct: 92  AKEGNYVSSLILVPTRELAQQVADSFMRYSQLIKPNLKTLAVYGGVSTNTQMLSLRGGAD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I    L +     +VLDEAD ML LGF +++  +L   PK ++ L+FS
Sbjct: 152 IVVATPGRLIDLISSNALKLDKTTTLVLDEADRMLSLGFTEELNELLAKLPKTKQTLLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +  L  +   + V V + S          R + V  + +   +  +++ +  + 
Sbjct: 212 ATFPEEVRELTDSLLNNPVEVQLQSSEESTL--VQRVITVNRNRKTALLAELIKDNQWQQ 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F S + S +R  + L            +  Q  R+  L+  + G   V IATD+AAR
Sbjct: 270 VLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVLEGFKSGEISVLIATDIAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  L +VI+ EL  +P + +HR GR+GRAG  G+++ +I  +  +  + + ++  + 
Sbjct: 330 GIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIEKKNKLR 389

Query: 367 VVWEPAPSVEAIRE 380
           +  E  P  EA  E
Sbjct: 390 LEREQIPGFEADAE 403


>gi|194216574|ref|XP_001490317.2| PREDICTED: similar to Eukaryotic initiation factor 4A-III
           (Eukaryotic translation initiation factor 4A isoform 3)
           (ATP-dependent RNA helicase eIF4A-3) (ATP-dependent RNA
           helicase DDX48) (DEAD box protein 48) (Eukaryotic
           initiation factor 4A-like NUK-34) (Nucl [Equus caballus]
          Length = 375

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 43/378 (11%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+   + + +   +   G+   +++Q+  +   ++ +DV+  +Q+G+GKT  F +++  
Sbjct: 39  TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  +           AL +APTRELAVQ+ + L  L     V    CIGG +V  + R 
Sbjct: 99  CLDIQ------VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK 152

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G H+V GTPGR+ D IR + L    +K +VLDEADEML+ GF++ I  +    P   
Sbjct: 153 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++ SAT+   I  +   +  D +R+ +      H                        
Sbjct: 213 QVVLISATLPHEILEMTNKFMTDPIRILVKRFYYIHPLF--------------------- 251

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                           V   T+ + E  F V ++ G++ Q+ER + ++  R G +RV I+
Sbjct: 252 --------------DPVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLIS 297

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D+P + L+I+ +L +N E  +HR GR+GR GRKG+++  +  +  R    + 
Sbjct: 298 TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIE 357

Query: 361 REANVSVVWEPAPSVEAI 378
           +  +  +   P    + I
Sbjct: 358 QYYSTQIDEMPMNVADLI 375


>gi|220927583|ref|YP_002504492.1| DEAD/DEAH box helicase [Clostridium cellulolyticum H10]
 gi|219997911|gb|ACL74512.1| DEAD/DEAH box helicase domain protein [Clostridium cellulolyticum
           H10]
          Length = 437

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 197/385 (51%), Gaps = 10/385 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++FE+  + + + EAL +      T +Q+  +   L+ +DV++ + TG+GKT+A+ L L 
Sbjct: 3   QLFESMELEKSLVEALKKESITVPTDIQQKAIPEALKNRDVILHSSTGTGKTLAYLLPLF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L AE           AL + PT ELA+QV R++E L   + +          V+  R+
Sbjct: 63  MKLSAEKKEM------QALILVPTHELAIQVVRQIELLSQNSEIKATSTPIIGDVNIMRQ 116

Query: 120 DLQNG--AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +     HI+VGTPGR+ + I+ + ++   +K +++DEAD +LD    D+I+ I+ ++ 
Sbjct: 117 IDKLKLKPHIIVGTPGRILELIQKRKISAHTIKTIIIDEADRLLDDYNLDNIKAIIKTTL 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R+++M SATIS      A    K+ + +   ++      I++   +    D+ + +  
Sbjct: 177 KERQIVMCSATISKKTVERAMPLMKEPLVIESKADMGVPDAIEHLYFVSEQRDKIDVLRK 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++R    K AI F +    +    + L  H  +   + G   + +R   +   ++GR ++
Sbjct: 237 LVRMINPKKAIAFFANSEDILVSEEKLRYHKLKAGGIHGSNIKSDRKKTMDDFKNGRLQL 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+D+AARG+D+ D+  + +  +     + LHR+GRTGR G+ G+++ ++ +       
Sbjct: 297 LIASDIAARGLDIEDVTHIFNVNIPERSMDYLHRAGRTGRNGKPGVAISIVTEKEIEFIR 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERD 382
           +  +E  + ++ +   + + +  + 
Sbjct: 357 KFEKELKIKIIPKSMFNGKIVEYKK 381


>gi|34582313|sp|Q8K301|DDX52_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX52; AltName:
           Full=ATP-dependent RNA helicase ROK1-like; AltName:
           Full=DEAD box protein 52
 gi|20809366|gb|AAH29094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Mus musculus]
          Length = 598

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 151/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ + Q       + + + + G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 163 TFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSI 222

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +   L    ++        AL I+PTRELA Q+ REL  +   TG  + +        +
Sbjct: 223 PILMQLKQPTNK-----GFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAK 277

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 278 KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLTSVEWLVVDESDKLFEDGKTGFREQLA 337

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +SPK RR +  +            N          A  +   +       + + 
Sbjct: 338 SIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSE 397

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++       +VF  +          L      V  +  E +QQ+R N + 
Sbjct: 398 TGKLLAMRELVKKGFKPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVH 457

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + LVI+ +  ++    +HR GRTGRAG +G +V   
Sbjct: 458 SFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFF 517

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + ++A   V  
Sbjct: 518 TEDDKPLLRSVANVIQQAGCPVPE 541


>gi|297193469|ref|ZP_06910867.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151793|gb|EDY62163.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 681

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 131/450 (29%), Positives = 215/450 (47%), Gaps = 10/450 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   
Sbjct: 65  TTFSDLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTL 124

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           +TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +  
Sbjct: 125 ATL---AGGHTEKKKPRAIILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIY 181

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P  
Sbjct: 182 ALERGVDVLVATPGRLRDIINRGACSLENVRVAVLDEADQMSDLGFLPEVTELLDQIPAG 241

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + ++FSAT+   I+TL K Y  D V   + S     + + +  ++V    +D A V   
Sbjct: 242 GQRMLFSATMENEISTLVKRYLTDPVTHEVDSAQGNVTTMSHHVLVV--KPKDKAPVTAA 299

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+F  T+    R  + L E   +  AL G ++Q  R+  L   ++G     +
Sbjct: 300 IAARKGRTIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKEGYVNALV 359

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL
Sbjct: 360 ATDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLSLPHQRRQIFRL 419

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
             +A V           A     A+  +     L  +Q D         A+ +  ++   
Sbjct: 420 MEDAGVDASRHIVGGAGAFDPEVAE--ITGARSLTEVQADSANNAAKQ-AEREVVELTRQ 476

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
             R+ R      EE   +   + R+R  D 
Sbjct: 477 LERVQRRATELREEADRLVARAARERGEDP 506


>gi|197336247|ref|YP_002156253.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
 gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
          Length = 421

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 109/383 (28%), Positives = 191/383 (49%), Gaps = 8/383 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST---LLAEN 66
            +   L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L L      L +  
Sbjct: 18  PLLARLTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPLLQQIAELQSSK 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV   ++         +      GGVSV+ +   L+ G
Sbjct: 78  AQASKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PK+++ L+
Sbjct: 138 ADILVATPGRLLDLISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    + TL +    + V + + S +        R + V   ++ + + ++++ +  
Sbjct: 198 FSATFPEEVQTLTQALLNNPVEIQLQSADASTV--VQRVLTVNKGEKTSVLAHLIQKNQW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + + + +     LA+         G+  Q  R+  L+  + G   V IATD+A
Sbjct: 256 RQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I        + + ++  
Sbjct: 316 ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYHHFKIIEKKNK 375

Query: 365 VSVVWEPAPSVEAIRERDAQRIL 387
           + +  E     E + E   + +L
Sbjct: 376 IRLDREQVEGFE-VNEEITEALL 397


>gi|326931593|ref|XP_003211912.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
           [Meleagris gallopavo]
          Length = 814

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 147/383 (38%), Gaps = 22/383 (5%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ +         + E +   G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 367 TFDQLQKEYKVHPKVIENIQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 426

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L + L    ++        AL I+PTRELA Q  REL  L   TG  + +        +
Sbjct: 427 PLLTHLKQPMNK-----GFRALIISPTRELASQTHRELVKLAEGTGFRIHMIQKASEAAK 481

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML--------DLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 482 KFGPKSSKKFDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFEDGKSGFREQLA 541

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   RR    +            N     +    A  +   +       + + 
Sbjct: 542 SIFLACTSHVVRRAFFSATFARDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSE 601

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++   A   +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 602 TGKLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVH 661

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + +VI+ +L ++    +HR GRTGRAG  G +V   
Sbjct: 662 SFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFF 721

Query: 349 PQNMQ---RRAERLFREANVSVV 368
            ++ +   R    + + A   V 
Sbjct: 722 TEDDKPLLRSIANVIQRAGCPVP 744


>gi|149198198|ref|ZP_01875245.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149138800|gb|EDM27206.1| ATP-dependent RNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 542

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 112/412 (27%), Positives = 198/412 (48%), Gaps = 6/412 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  A+ E  +   T VQE +L   L+ +DV   AQTG+GKT AF +++ +  +  
Sbjct: 121 DLCPAVQRAIHEMDFKFCTPVQEGVLPISLKGQDVAAKAQTGTGKTAAFLISMYNHFVNN 180

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                 A  P AL +APTRELA+Q+G + E L     + V    GG+   ++ + L+   
Sbjct: 181 PQTEVKAGTPRALILAPTRELALQIGADAEGLGKYCDIRVETFFGGMDFDKQAQILRGRV 240

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML-- 183
            I V TPGRL D+ R K +N+  ++ + +DEAD MLD+GF  D+  I+   P + + +  
Sbjct: 241 DIAVATPGRLMDYHRRKMINLREVEFLCIDEADRMLDMGFIPDVRKIVGYLPGRDKRITQ 300

Query: 184 -MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +      +   A    +   +V I  E     ++D +   V  + ++N I+  L+  
Sbjct: 301 LYSATLNQSVLNLAASWLNEKYEKVEINPETIVSKNVDQKVYTVTANQKENVILWHLKNE 360

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVA-LSGELSQQERSNALQMMRDGRARVCIAT 301
             K  I+F + +    R    L ++    +  L+G++ Q++R   L+  R G+ +V +AT
Sbjct: 361 EVKRMIIFANRKFDCERLADKLYQYGVDKLELLTGDVPQKKRMRILEEFRSGKVQVLVAT 420

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVA RGI + D+  V++ EL   PE+ +HR GRTGRA   G ++    +N       +  
Sbjct: 421 DVAGRGIHVDDVSHVVNYELPYEPEDYVHRVGRTGRASALGKAISFADENSGFELPEIEC 480

Query: 362 EANVSVVWE-PAPSV-EAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
              + +  E P   + +   ++ ++R        +   G+  K       ++
Sbjct: 481 YIEMQLPAEVPLEGMTDDHDKKHSERKFAQKRGGNKHSGNRNKGGSRHQERN 532


>gi|297806935|ref|XP_002871351.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317188|gb|EFH47610.1| hypothetical protein ARALYDRAFT_487703 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 794

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/431 (26%), Positives = 193/431 (44%), Gaps = 24/431 (5%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+  P   +  +A+ + G+  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 328 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 387

Query: 62  LLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++      R +     + L + PTRELA Q   E   L      +    V  G      +
Sbjct: 388 VIKSPPASRDNRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQ 447

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           RR   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 448 RRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIA 507

Query: 175 SSPKKRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           + PK+R+  +FSAT+   +  +         + +          H  +    ++ +L   
Sbjct: 508 AVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGTGETHQKVTQMYMIASLDRH 567

Query: 232 DNAIV----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
            + +       +  +     I+FC+T         +L++    V  +     Q  R+   
Sbjct: 568 FSLLYVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLNLNVREIHSRKPQSYRTRVS 627

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +A + + +DV+ARG+D PD+ LV+   L S+ E  +HR GRTGR G++G  V +
Sbjct: 628 DEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLL 687

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +    +     +    ++ +   P P ++    +  Q+ L      +     ++      
Sbjct: 688 LAPWEEYFMSSV---KDLPITKSPLPPIDPEAVKRVQKGLSQVEMKN-----KEAAYQAW 739

Query: 408 LAKHDPEKIAA 418
           L  +  +K+ A
Sbjct: 740 LGYYKSQKMIA 750


>gi|290963039|ref|YP_003494221.1| DEAD-box RNA helicase [Streptomyces scabiei 87.22]
 gi|260652565|emb|CBG75698.1| probable DEAD-box RNA helicase [Streptomyces scabiei 87.22]
          Length = 497

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 194/383 (50%), Gaps = 7/383 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+++  P+ +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 68  VEAFDDLDMPRQLLAELHRQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PL L + PTRELA QV   L       G+ +A  +GG+S+ R+ 
Sbjct: 128 LAR--TAGQRAEP-RHPLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGMSIGRQA 184

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    
Sbjct: 185 GMLRAGAEVVVATPGRLKDLIERGECRLNQVGITVLDEADQMADMGFMPQVTALLDQVRP 244

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+  A +  
Sbjct: 245 EGQRMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHLLHVHGADKHAATIE- 303

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R  + L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 304 -IAARDGRVIMFLDTKHAVDRLAQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVL 362

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R  +R
Sbjct: 363 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRSMDR 422

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L   A +        S +    R
Sbjct: 423 LMAAAGIRPQSTQIRSGDESLSR 445


>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
 gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
          Length = 431

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 109/392 (27%), Positives = 191/392 (48%), Gaps = 11/392 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP ++   L+E  Y   T +Q   +   L  +D++  A TGSGKT  F L +   L  + 
Sbjct: 16  IPPLLAR-LTELEYQQPTPIQAQAIPSVLAGRDLIAGANTGSGKTATFALPMLQQLYLQQ 74

Query: 67  DRFS-----PASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERR 119
              +       +    L + PTRELA QV   ++   A     +      GGVSV+ + +
Sbjct: 75  QGKTSVATNKGNYVAGLVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVSVNAQMQ 134

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G+ IVV TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K
Sbjct: 135 ALRGGSDIVVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLLALMPAK 194

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L+FSAT    + +L ++   + V + + S +        R   V    +   + +++
Sbjct: 195 KQTLLFSATFPLQVQSLTQSLLTNPVEIQVQSSDASTV--VQRVFTVNKGAKTELLAHLI 252

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H  + A++F + +       + L +         G+  Q  R+  L+  + G   + I
Sbjct: 253 TEHKWRQALIFVNAKNHCEHLAQKLEKRGISAKVFHGDKGQSARTRVLEEFKAGEIDILI 312

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I Q+       +
Sbjct: 313 ATDIAARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQDDYHHFSII 372

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPL 391
            ++  + +  E  P    + E  A+ +++ P+
Sbjct: 373 EKKNKIRLERELVPGF-LVVEPSAENMVEKPM 403


>gi|322709683|gb|EFZ01259.1| ATP-dependent RNA helicase [Metarhizium anisopliae ARSEF 23]
          Length = 434

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 177/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   L   D++  A++G GKT  F LA    +   N
Sbjct: 57  LKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVN 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          +            +     ++  
Sbjct: 117 GEVS------VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFFGGTPIKTDMETLKNKD 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD-DIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD      D++ +  ++P +++
Sbjct: 171 TCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT++  I  + + + ++     +  + +       +  +     +++  +  +L 
Sbjct: 231 VMMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++ + R+C+A
Sbjct: 291 ELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFKKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TDV  RGID+  + L I+ +L ++  + LHR GR GR G KG+++  +  +  Q   + +
Sbjct: 351 TDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQDVLKEI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   V+A
Sbjct: 411 EKRFEVALPEFPKEGVDA 428


>gi|313884071|ref|ZP_07817837.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620518|gb|EFR31941.1| DEAD-box ATP-dependent RNA helicase CshB [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 451

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 107/397 (26%), Positives = 188/397 (47%), Gaps = 19/397 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++   + I  AL+E  +  +T VQ  ++   L+ +D++V +QTGSGKT AF L +  
Sbjct: 2   LFKDLHLKEYIQIALNEANFTTMTPVQTEVIPQALKGEDLIVQSQTGSGKTHAFLLPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRE----LEWLYAKTGVVVAVCIGGVSVHR 116
            +  +           A+  AP+RELA Q+ +     ++       +   +         
Sbjct: 62  NINED------VQEVQAVITAPSRELATQLYQVASSLIQAADKPIRLENYIGGTDKQRQL 115

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           ++        +V+GTPGR+ D +    L +   K +V+DEAD  LDLGF   ++ I    
Sbjct: 116 DQLGPDKQPQLVIGTPGRIFDLMSDNALWVQTAKILVVDEADMTLDLGFLKIVDEIASRM 175

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +M+ FSAT+   +      Y      V I  +      I+   +      R+    
Sbjct: 176 PQDLQMMAFSATVPQELRVFLNKYMVAPKVVTIKPKQVISETIENYLINTKGKSREELTY 235

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VFC+T+A   + +  L E   +V  + G++S +ER   ++ +++   +
Sbjct: 236 QLLTMGQPYLALVFCNTKAYADQMSLFLKEKGLKVATIHGDISSRERKRVMKQIQNLDFQ 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+P   LVI+ EL    E  +HR GRTGR G +G +   +  +  +  
Sbjct: 296 YVVATDLAARGIDIPGTSLVINTELPMELEYFVHRVGRTGRNGLEGRAFTFVTPDDDQAV 355

Query: 357 ERLFREANVSVVWEPAP----SVEAIRERDAQRILQD 389
             L     + V +EP       +  ++ RD+++  QD
Sbjct: 356 SDLEA---MGVEFEPVELRQGQLVEVKHRDSRKRRQD 389


>gi|255075181|ref|XP_002501265.1| predicted protein [Micromonas sp. RCC299]
 gi|226516529|gb|ACO62523.1| predicted protein [Micromonas sp. RCC299]
          Length = 432

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 94/361 (26%), Positives = 166/361 (45%), Gaps = 16/361 (4%)

Query: 3   IFENIP------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            FE++       + + + L + G+   T +Q   +   L   ++L  A TGSGKT+AF L
Sbjct: 29  TFEDLRTVHGLGRAMLQRLRDAGFHEPTPIQRQAIPILLEGSELLAVAPTGSGKTLAFLL 88

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            + + L A++D    A  P AL ++PT+ELA Q  R L+ L   T  +  V       + 
Sbjct: 89  PMVTKLAAKDDE---AGGPRALLLSPTKELAQQSFRILKLLCRGTNTLRCVWSSATQNNE 145

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-S 175
             +       I+V TP RL   I    +++  ++ +VLDEAD++ ++GF + ++  +   
Sbjct: 146 FAK-----VDILVATPLRLKSLIEKNKVSLGAVRYLVLDEADKLFEMGFVEQVDAAVAAC 200

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNA 234
                   +FSAT+   +  LA++     +R+ +   N     I    V       +  A
Sbjct: 201 DGPNITRALFSATLPETVENLARSVMTQPIRLTVGERNSASGAIAQSLVFCGQERGKLLA 260

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +  ++        IVF  ++    +  K L+     +  +   +S  +R   +   R G 
Sbjct: 261 LRQLIDRGIKPPIIVFVQSKDRAKQLAKELSGDGLHLGLIHAAMSDAKRRAQVDRFRAGD 320

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V +ATD+ ARG+D   +  VI+ +   +P + +HR GR+GRAGR G +V +  +    
Sbjct: 321 TWVLVATDLMARGMDFVGVSTVINYDFPGSPHSYIHRIGRSGRAGRPGAAVTLFTEEDAD 380

Query: 355 R 355
           R
Sbjct: 381 R 381


>gi|255543463|ref|XP_002512794.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223547805|gb|EEF49297.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 514

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 2/368 (0%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+PQ +   L   GY   T VQ   +   L  K +L SA TGSGKT ++ + + S+  + 
Sbjct: 126 NLPQKLLLNLEAAGYDLPTPVQMQAIPTALSGKSLLASADTGSGKTASYLVPIISSCASY 185

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S    PLA+ + PTREL +QV  + +          A+ +GG ++  +   +Q G 
Sbjct: 186 RLQHSSDRKPLAMVLTPTRELCIQVEDQAKLFGKGLPFKTALVVGGDAMAGQLYRIQQGV 245

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++VGTPGRL D +    + + ++   V+DE D ML  GFRD +  I  +  + + +L  
Sbjct: 246 ELIVGTPGRLIDLLTKHDIELDNMIIFVIDEVDCMLQRGFRDQVMQIFWALSQPQVLLYS 305

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHG 243
           +          +   +  A+           +               +   I+   ++  
Sbjct: 306 ATVTQEVEKMASSMAKDMALVSIGQPNRPSKAVKQLAIWVEPKQKKQKLFDILMSKQHFM 365

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               +   S   +      +     ++ +++ GE S +ER   ++    G   V +AT V
Sbjct: 366 PPAVVYVGSRLGADLLSNAITVTTGWKSLSIHGEKSMKERREIMKSFLVGEVTVIVATGV 425

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
             RG+DL  +  VI  ++ ++ +  +H+ GR  R G  G+++  + +  +          
Sbjct: 426 LGRGVDLFGVRQVIIFDMPNSIKEYIHQIGRASRMGEGGIAIVFVNEENKNLFPEFIEVL 485

Query: 364 NVSVVWEP 371
             S    P
Sbjct: 486 KSSAAVIP 493


>gi|309362056|emb|CAP28713.2| hypothetical protein CBG_09074 [Caenorhabditis briggsae AF16]
          Length = 747

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 178/411 (43%), Gaps = 31/411 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---ST 61
              P  +  A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    ++
Sbjct: 323 SGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITS 382

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +      P A+ +APTRELA Q+  E        G+     IGG S   +   L
Sbjct: 383 LPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKL 442

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ IL+  P    
Sbjct: 443 RMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNM 502

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-------------------------QH 216
                   +          +    +  + +                              
Sbjct: 503 KKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPT 562

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++    ++    +   ++ ++  H     IVF + +       K LA+   +   L G
Sbjct: 563 ERVEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHG 622

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q  R  AL+ ++D   ++ +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 623 GKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 682

Query: 337 RAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           RAG+ G ++  +  +        ++   E+ +S       + EA R +  Q
Sbjct: 683 RAGKHGKAITFLTADDTAVYYDLKQCLLESPISSCPPELANHEAARAKPGQ 733


>gi|311895413|dbj|BAJ27821.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 594

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 115/379 (30%), Positives = 180/379 (47%), Gaps = 11/379 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +P  +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGL L       
Sbjct: 92  ELPAGLMRELGAQGVTEPFPIQAATLPDALAGRDVLGRGRTGSGKTLAFGLPLLVR---T 148

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + + A  PLAL + PTRELA QV   L        + +   +GG+S+ R+   ++ G 
Sbjct: 149 AGKRATARRPLALVLVPTRELAQQVTEALAPYAGVLNLRITTVVGGMSITRQSNQVRRGT 208

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            ++V TPGRL D I+   + +  +   VLDEAD+M D+GF   +  +L+      + ++F
Sbjct: 209 EVLVATPGRLDDLIQRGDVFLEDVAITVLDEADQMADMGFLPQVVKLLEQVADGGQRMLF 268

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L   +  D V  ++       + +D+  + +  +D+              
Sbjct: 269 SATLDRNVDRLVNRFLTDPVTHSVDPSAGAVTTMDHHLLQLEPADKAETTAR--IAARDG 326

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+    R  K L  H     AL G  SQ +R+  L   R+G     IAT+VAA
Sbjct: 327 RVIMFVHTKHGADRLAKQLRAHGVVAAALHGGKSQPQRNRVLDQFREGEVTALIATNVAA 386

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R   RL   A +
Sbjct: 387 RGIHIDGLDLVVNVDPPIDHKDYLHRGGRTARAGESGTVVTLVLPEQRREVNRLMSIAGI 446

Query: 366 SVVWEPAPSVEAIRERDAQ 384
                  P+V  +R  D +
Sbjct: 447 R------PTVTKVRPEDGE 459


>gi|294818017|ref|ZP_06776659.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294322832|gb|EFG04967.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 475

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 193/376 (51%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G  +   +Q A L   L  +D+L  A+TGSGKT+AFGLAL +      
Sbjct: 50  LPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLAR---TA 106

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  PLAL + PTRELA QV   L       G+  A  +GG++++R+   L+ GA 
Sbjct: 107 GLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAGAE 166

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +   LD  P   + L+FS
Sbjct: 167 VVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRLLFS 226

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L ++Y  + V   +       + +++  + V  +D+               
Sbjct: 227 ATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADKYATATE--IAARDGR 284

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V +FT+ L     Q  AL    SQ +R++ L   +DG   V +AT+VAAR
Sbjct: 285 VLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVATNVAAR 344

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+  +A + 
Sbjct: 345 GIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRMMSDAGIR 404

Query: 367 VVWEPAPSVEAIRERD 382
                 P+V  +R  +
Sbjct: 405 ------PTVTQVRSGE 414


>gi|282852128|ref|ZP_06261485.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
 gi|282556692|gb|EFB62297.1| DEAD/DEAH box helicase [Lactobacillus gasseri 224-1]
          Length = 415

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 185/384 (48%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E I   +   L +  +   T VQ A++   L  K V+V A TGSGKT A+ L L + +  
Sbjct: 14  EKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDE 73

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDL 121
                       A+  AP+RELA Q+ +    L   +G+ +++     G     +  +  
Sbjct: 74  NAP------VTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQIEKAE 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+    KK  
Sbjct: 128 NRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDKKVV 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +    + Y      + I +       I    + V   D+   +  +L  
Sbjct: 188 LGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEILYKLLTM 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +  +A+
Sbjct: 248 GQPYLALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVAS 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I      + E L +
Sbjct: 308 DLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQIEDLEK 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 368 -LGIHFDFKEIKNGELVERTHYHR 390


>gi|262203393|ref|YP_003274601.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262086740|gb|ACY22708.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 543

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/389 (33%), Positives = 195/389 (50%), Gaps = 18/389 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL++ G  +  ++QE  L   +   D++  A+TG GKT  FG+ L  
Sbjct: 26  TFAELGVDDRIVAALADDGKTHTFAIQELTLPLAMGGDDLIGQARTGMGKTFGFGVPLLH 85

Query: 61  TLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELEWLYAKT-----------GVVVAV 107
            L    +    A  + P AL I PTREL +QV  +LE    K             + +  
Sbjct: 86  RLAHAEESGLRALDNTPRALIIVPTRELCIQVTGDLEVAAKKLTDITLADGTVRPLKITS 145

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
             GG     +  DL+ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  
Sbjct: 146 IYGGRPYESQIADLRAGVDVVVGTPGRLLDLAQQGHLILGKVAVLVLDEADEMLDLGFLP 205

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           DIE I+ + P  R+ ++FSAT+   I T      ++   +R   A ++  H         
Sbjct: 206 DIERIMSALPTPRQTMLFSATMPGPIVTLARTFLHRPTHIRAEHADDSAIHERTTQYVYR 265

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
               D+   +  IL+  G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  
Sbjct: 266 AHALDKAELVARILQAEGRGATMIFTRTKRTAQKVADDLAERGFKVGAVHGDLGQVAREK 325

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  RDG   V +ATDVAARGID+ D+  VI+ ++  + +N +HR GRTGRAGR G++V
Sbjct: 326 ALKRFRDGTIDVLVATDVAARGIDIDDVTHVINYQIPEDDKNYVHRIGRTGRAGRTGIAV 385

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPS 374
            ++  +   R E +     + +  EPA +
Sbjct: 386 TLVDWDELHRWELINNALGLGIP-EPAET 413


>gi|254387768|ref|ZP_05003006.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|326446864|ref|ZP_08221598.1| DEAD-box RNA-helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197701493|gb|EDY47305.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 472

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 119/376 (31%), Positives = 193/376 (51%), Gaps = 11/376 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+  G  +   +Q A L   L  +D+L  A+TGSGKT+AFGLAL +      
Sbjct: 47  LPVELMGTLTRLGVRDPFPIQAATLPSALAGRDILGRARTGSGKTLAFGLALLAR---TA 103

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              + A  PLAL + PTRELA QV   L       G+  A  +GG++++R+   L+ GA 
Sbjct: 104 GLRAEAKRPLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAGAE 163

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +  +  ++  ++  VLDEAD+M D+GF   +   LD  P   + L+FS
Sbjct: 164 VVVATPGRLADLVARRDCHLDRVRIAVLDEADQMCDMGFLPQVSEALDRMPPGGQRLLFS 223

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L ++Y  + V   +       + +++  + V  +D+               
Sbjct: 224 ATLDRNVDHLVRHYLTEPVPATVDRAEGSVATLEHHVLNVHPADKYATATE--IAARDGR 281

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V +FT+ L     Q  AL    SQ +R++ L   +DG   V +AT+VAAR
Sbjct: 282 VLMFLDTKHGVDQFTRHLRSSGIQAGALHSGKSQPQRTHTLARFKDGGLTVLVATNVAAR 341

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+  +A + 
Sbjct: 342 GIHIEHLDLVVNVDPPADAKDYLHRGGRTARAGESGSVVTLVTPGQRRDVNRMMSDAGIR 401

Query: 367 VVWEPAPSVEAIRERD 382
                 P+V  +R  +
Sbjct: 402 ------PTVTQVRSGE 411


>gi|80477520|gb|AAI08449.1| LOC398188 protein [Xenopus laevis]
          Length = 768

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 177/419 (42%), Gaps = 17/419 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  +   + L  +G   L  +Q    +     KDV+V A+TG+GKT +FG+ L   
Sbjct: 191 FSKFPISKDTIKNLQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVER 250

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    +   AP  + + PTRELA+Q+  EL  +  K    VA   GG    ++   +
Sbjct: 251 LSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKL--KVACFYGGTPYQQQVFAI 308

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G   +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K   
Sbjct: 309 KDGIDFLVGTPGRIRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDP 368

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI------ 235
                  +  A                   +         +A +                
Sbjct: 369 EENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAA 428

Query: 236 ----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +        I+FC ++      +            L G+L Q+ER   L+  R
Sbjct: 429 VLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFR 488

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V IAT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +    
Sbjct: 489 QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPW 548

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +     + R   ++      PS+  + +  +   ++    LD++  D  +       +
Sbjct: 549 EKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKS---LDTVPADVIEHFKEYAQE 604


>gi|260826097|ref|XP_002608002.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
 gi|229293352|gb|EEN64012.1| hypothetical protein BRAFLDRAFT_74954 [Branchiostoma floridae]
          Length = 430

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/401 (28%), Positives = 189/401 (47%), Gaps = 31/401 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ +  AL +RG  + T +Q   L   L  +D++  A TGSGKT+        
Sbjct: 1   MK----FPRGVIHALKKRGIHHPTPIQIQGLPAILSGRDMIGIAFTGSGKTL-------- 48

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY-------------AKTGVVVAV 107
               +   F+    P +L I P+RELA Q  + +                     +   +
Sbjct: 49  ----KRLPFTKNDGPYSLIICPSRELARQTHQFITHNMISRSDEYHFLYPIGMPAMRTML 104

Query: 108 CIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
           CIGG S   +    + G H++V TPGRL D +  K  N+   + +VLDEAD M+D+GF +
Sbjct: 105 CIGGESAKDQFEQSKRGVHMMVATPGRLMDMLNKKAFNLDTCRYLVLDEADRMIDMGFEE 164

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           DI  I      +R+ L+FSAT+   I   A+      V VN+        D+      V 
Sbjct: 165 DIRTIFSYFKGQRQTLLFSATMPKKIQNFARTALVKPVTVNVGRAGAASLDVIQEVEYVK 224

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +   ++  L+       ++F   +A V    + L     + VA+ G   Q+ER+ A+
Sbjct: 225 QEAKIVYLLECLQKTSPP-VLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEERTRAI 283

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R+G+  V +ATDVA++G+D PD++ VI+ ++  + EN +HR GRTGR G+ G++   
Sbjct: 284 EAFREGKKDVLVATDVASKGLDFPDIQHVINFDMPEDIENYVHRIGRTGRCGKTGIATTF 343

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           I +          +   +    +  P +E + E ++++ L+
Sbjct: 344 INKACDESVLLDLKHLLLEAKQKIPPVLETL-ESESEKYLE 383


>gi|89894520|ref|YP_518007.1| hypothetical protein DSY1774 [Desulfitobacterium hafniense Y51]
 gi|89333968|dbj|BAE83563.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 424

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 102/373 (27%), Positives = 191/373 (51%), Gaps = 8/373 (2%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            EAL + G V  T +Q+  +   L  +DV   ++TGSGKT+A+ L +   +         
Sbjct: 1   MEALEKEGIVQPTEIQKLTIPLILSNRDVAGQSETGSGKTLAYLLPVLQKIDRNKREN-- 58

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNGAHIVV 129
                 L + PT ELA+QV R+++ L       +  A  IG V++ R+   L+   HI+V
Sbjct: 59  ----QVLVLTPTHELALQVQRQIQDLSRHLAATITSAAIIGNVNIARQIEKLKEKPHIIV 114

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
           G+ GR+ + I+ + ++   LK +VLDEAD++LD      ++ +L ++ K  ++L+FSAT+
Sbjct: 115 GSAGRILELIQKRKISAQSLKTIVLDEADQLLDERNIQTVKAVLKTAYKDSQILLFSATL 174

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
           S      A  + KD     I  +      I ++  +    D+   +  ++R+     A++
Sbjct: 175 SQDAIEQAAGFLKDPAVQRITMKATVVPTIIHQHFMCEQRDKLELLRKLVRHLEPGRALI 234

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F +    + +  + L+ H    VA+SG   ++ R  A+   R G+ ++ +A+D+AARG+D
Sbjct: 235 FINKTEEIEKTVERLSYHGLDAVAISGASQKENRRQAMADFRAGKTQLLVASDLAARGLD 294

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
           + ++  + + ++   P+  LHR GRTGRAG+ G++V ++ Q       ++     +S+  
Sbjct: 295 IKNITHIFNLDIPEEPQLYLHRVGRTGRAGQSGVAVSLVTQRELPLLHKIENSLKISIPL 354

Query: 370 EPAPSVEAIRERD 382
                 + I E++
Sbjct: 355 RRLSFGKVIGEKE 367


>gi|296111805|ref|YP_003622187.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
 gi|295833337|gb|ADG41218.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
          Length = 455

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 179/385 (46%), Gaps = 12/385 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL+  G+   T VQ  ++   L+  DV+  +QTGSGKT  F + + + L   
Sbjct: 12  NLSPEIITALTAIGFTKPTPVQAKLIPSILKGNDVVGQSQTGSGKTHTFLIPIFNQLEQN 71

Query: 66  NDRFSPASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                      A+   P+RELA Q+    ++    + +  ++     G   + + ++  +
Sbjct: 72  KAYA------QAVITTPSRELAAQITKAAKDFSEQWHQDAIISEFVGGTDKLRQIKQLEK 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               IV+GTPGR+ D +    L +  +K  V+DEAD  LD+GF ++++FI    P   + 
Sbjct: 126 GQPQIVIGTPGRIKDLVASGALKLHAVKTFVVDEADMTLDMGFLNEVDFIAGVMPANLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     D+++ I  +L   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPQFEAIPVSTVIADTIDNWLLATKSKDKNDVIYQVLTIG 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+         L     +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKDRAKEIVSNLRGRGLKVAEIHGDIEPRERRRVMKAIQNLEYQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+  +  VI+ ++    E  +HR GRTGR G  G+++ +   + +   E     
Sbjct: 306 LAARGIDITGVSHVINDDIPEELEFFVHRVGRTGRNGLPGLAITLYGPDEENEVEE-LEA 364

Query: 363 ANVSVVWEPAPSVE--AIRERDAQR 385
             ++   +     E   I++R A++
Sbjct: 365 LGINFKAKQIKDNEIVDIKDRRARK 389


>gi|126434048|ref|YP_001069739.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           JLS]
 gi|126233848|gb|ABN97248.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS]
          Length = 507

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 186/375 (49%), Gaps = 10/375 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  AL+E G     ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 11  TFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-----GVVVAVCIGGVSVH 115
            +  + ++      P AL + PTREL +QV  +L             + V    GG    
Sbjct: 71  RVTTDTEKELSGI-PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYE 129

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  
Sbjct: 130 PQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 189

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I T       Q   +R      +  H      A      D+  
Sbjct: 190 TPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVE 249

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL+  G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G
Sbjct: 250 MVSRILQADGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTG 309

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  +  
Sbjct: 310 EVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDEL 369

Query: 354 RRAERLFREANVSVV 368
            R   + +   ++  
Sbjct: 370 PRWSMIDKALGLNTP 384


>gi|319442814|ref|ZP_07991970.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 456

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 123/376 (32%), Positives = 192/376 (51%), Gaps = 14/376 (3%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            I +AL+++G     ++QE  L   L  KD++  A+TG GKT+ FG+ +   L  + D  
Sbjct: 16  EIVDALTDQGIDRAFAIQERTLPLALTGKDLIGQARTGMGKTLGFGVPMLDRLFDDADIT 75

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLY------------AKTGVVVAVCIGGVSVHRE 117
                   L + PTREL +QV  +L                A     V    GGV   ++
Sbjct: 76  ELDGTVRGLVVVPTRELCLQVAEDLTGASTRLTAPVGPGKDATRPFRVTAIYGGVPFEKQ 135

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L  G  +VVGTPGRL D  R   L+++H++ +VLDEADEMLD GF DD++ I+  + 
Sbjct: 136 TAALDAGTDVVVGTPGRLLDLSRQNLLDLTHVEVLVLDEADEMLDQGFLDDVKAIMAQTS 195

Query: 178 KKRRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             R+ ++FSAT+   I   T +  ++   VR + +S    H+            DR + +
Sbjct: 196 PNRQTMLFSATMPGPIVALTRSFMHRPVRVRADNSSAQATHATTTQIVFQSHRLDRVSVL 255

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             IL+  G    IVF  T+ S +   + LA   F+V A+ G++ Q +R  +L   RDG  
Sbjct: 256 ARILQTPGRGRTIVFARTKRSAAMVAEDLAGLGFRVGAVHGDMRQNDRERSLDAFRDGSV 315

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG  G++V ++  +   R
Sbjct: 316 DIMVATDVAARGIDVEDVTHVINYQVPEDDKTYVHRIGRTGRAGHSGVAVTLVDWDDLTR 375

Query: 356 AERLFREANVSVVWEP 371
            + +    N+     P
Sbjct: 376 WQAIDDTLNLGHPTPP 391


>gi|126668612|ref|ZP_01739565.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
 gi|126626942|gb|EAZ97586.1| ATP-dependent RNA helicase, specific for 23S rRNA [Marinobacter sp.
           ELB17]
          Length = 457

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 130/372 (34%), Positives = 202/372 (54%), Gaps = 10/372 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++     +   L   G+   T +Q   L   L  +DV+  A TGSGKT AFG+ L
Sbjct: 1   MPSFKDLELSAAMQANLVRLGFTEPTDIQTRALPHCLAGQDVIALAHTGSGKTAAFGIGL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRE 117
              +  +        +  +L + PTRELA QV + L  L   +  + +    GGVS+  +
Sbjct: 61  IEHVKPKQ------FSVQSLVLCPTRELADQVAKALRELARARDNIKILTLCGGVSIGPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L +GAHIVVGTPGR+ DH++   L +  +  VVLDEAD MLD+GF++ +E IL  +P
Sbjct: 115 IGSLAHGAHIVVGTPGRIADHLQKGTLKLDRVHTVVLDEADRMLDMGFQEAVENILSHAP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +R+ L+FSAT   +I  L+  +Q++ V V   +E       +    +   + R  AIV 
Sbjct: 175 AQRQTLLFSATWPESIRKLSAGFQREPVDVRAQTEKMNSDIAEVFYEIS-GNQRTRAIVA 233

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L  H   + +VFC+ +         L++  F  +AL G+L Q++R + L    +   +V
Sbjct: 234 LLSQHQPTSCLVFCAMKHQCDELAAELSQQGFSALALHGDLEQRDRDSVLVRFANQSCQV 293

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L LV++AE + +PE   HR GRTGRAG +G++V +   +   +  
Sbjct: 294 LVATDVAARGLDIKSLPLVVNAEPAGDPEIHTHRIGRTGRAGEQGLAVTLCSPSQGHKIN 353

Query: 358 RLFREANVSVVW 369
           RL  E   +V+W
Sbjct: 354 RLESERGATVIW 365



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 466 SSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
                ++ G K+K     +M  L    G+   ++G I V     FV V +         +
Sbjct: 383 MKTLCIAAGRKEKLRPGDVMGALTGDGGLPGSAVGKINVFEFQCFVAVESRHAGRALEQL 442

Query: 526 KLD--KGIQLK 534
           +    KG  L+
Sbjct: 443 ERGKVKGRNLR 453


>gi|326477553|gb|EGE01563.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           equinum CBS 127.97]
          Length = 812

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 374 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 433

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 434 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 493

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 494 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 553

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 554 EKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 613

Query: 216 --HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               +     V      +      +         IVF + + +     + +    F  V 
Sbjct: 614 VDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 673

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 674 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 733

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 734 RTGRAGKSGVAITFLGNEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 784


>gi|71028514|ref|XP_763900.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
 gi|68350854|gb|EAN31617.1| small nuclear ribonucleoprotein, putative [Theileria parva]
          Length = 744

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 173/379 (45%), Gaps = 30/379 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+ + GY+  T +Q   +   L  +D++  A TGSGKT AF L + + +  L 
Sbjct: 336 LPWELLEAIKKAGYIKPTPIQMQAIPIALEMRDLIGIAVTGSGKTAAFVLPMLTYVKKLP 395

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             D  +    P AL +AP+RELA+Q+  E     A         +GG +   +  +L+ G
Sbjct: 396 PLDDETSLDGPYALVLAPSRELALQIYDETVKFSAFCSCRSVAVVGGRNAETQAFELRKG 455

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------- 177
             I++GTPGR+ D +      +S    V+LDEAD M+D+GF D +++ILD  P       
Sbjct: 456 CEIIIGTPGRVKDCLDRAYTVLSQCNYVILDEADRMIDMGFEDVLKYILDCIPSTNLKDR 515

Query: 178 -----------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                            + R   MFSAT+ PA+  L K Y +    ++I       + I 
Sbjct: 516 DESSALQQELSTKAGHRRYRITHMFSATMPPAVEKLTKRYLRAPAFISIGDVGGGKTSIT 575

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R   V  S +   +   L        I     + +      +        V+L G  +Q
Sbjct: 576 QRLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVIAKHITKIA----VSLHGGKTQ 631

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R +AL   + G   + +ATDV  RG+D+  ++ VI+ ++  + +   HR GRTGRAG 
Sbjct: 632 ESREDALNNFKSGVYDILVATDVVGRGLDVEGIKCVINYDMPKDIQTYTHRIGRTGRAGL 691

Query: 341 KGMSVFVIPQNMQRRAERL 359
           KG+S+  +          L
Sbjct: 692 KGLSISFVTDADVDLFYDL 710


>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
 gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans]
          Length = 739

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/462 (26%), Positives = 218/462 (47%), Gaps = 24/462 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + + L    YV  + +Q A +   L  KD++  A TGSGKT A+ + +   LL +
Sbjct: 229 SLSRPVLKGLGALNYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAYMIPIIERLLYK 288

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRE-LEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             + +   +   + + PTRELA+QV     +      G+   + +GG+++ ++ + L++ 
Sbjct: 289 PAQIA---STRVIVLTPTRELAIQVSDVGAKLAKFVNGISFGLAVGGLNLRQQEQTLRSR 345

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             IV+ TPGRL DHIR     N+  ++ +V+DEAD ML+ GF+D++  I+   P KR+ L
Sbjct: 346 PDIVIATPGRLIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSKRQTL 405

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +FSAT++  I  L     K  V++ I    +  + +    V V   D     +       
Sbjct: 406 LFSATMNSKINQLISLSLKKPVKIMIDPPRQAAAKLTQEFVRVRKRDELKPALLFHLIRK 465

Query: 244 -----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K  +VF + +    +   +L     +V  L G LSQ++R  A+   +  +  V 
Sbjct: 466 LDDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNGFKSLQVPVL 525

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           I TD+A+RG+D+P +E VI+ ++    +  LHR GRT RAGR+G S+  + ++ Q R   
Sbjct: 526 ICTDLASRGLDIPKIEFVINYDMPKTYDIYLHRVGRTARAGREGRSISFVGESSQDR--- 582

Query: 359 LFREANVSVVWEPAPSVEAIRERD--AQRILQ--DPLFLDSIQGDEKKMVDVLLAKHDPE 414
                  +VV     S E  +++D    R++       ++ +  ++  ++  +L +   E
Sbjct: 583 -------NVVKNAIKSAEENKKQDTVVGRMVDWAKVEEINKLTTNKDDVIAEILEEEKQE 635

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
           K         R G    +    +S    R  F+ +       
Sbjct: 636 KEILRAEMEVRKGENMLKHKDEISARPRRTWFQTEGEKKNSK 677


>gi|222618647|gb|EEE54779.1| hypothetical protein OsJ_02176 [Oryza sativa Japonica Group]
          Length = 429

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 181/370 (48%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 55  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +        AL +  TRELA Q+  E E        V      G    ++ +D    + 
Sbjct: 115 GQVG------ALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDC 168

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+MLD    R D++ I   +P  ++++
Sbjct: 169 PHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVM 228

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 229 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 288

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  +++   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 289 DFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATD 348

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++  +   +      ++  
Sbjct: 349 LVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 408

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 409 RFEVDIKELP 418


>gi|226506726|ref|NP_001141599.1| hypothetical protein LOC100273717 [Zea mays]
 gi|224032233|gb|ACN35192.1| unknown [Zea mays]
          Length = 429

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 180/370 (48%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 55  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 114

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        V      G    R+ +D      
Sbjct: 115 GQVA------ALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNEC 168

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 169 PHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 228

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 229 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 288

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   ++Q+ER  + +  ++G  R+ +ATD
Sbjct: 289 DFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTSYKNFKEGHKRILVATD 348

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 349 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 408

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 409 RFEVDIKELP 418


>gi|218690692|ref|YP_002398904.1| ATP-dependent RNA helicase SrmB [Escherichia coli ED1a]
 gi|218428256|emb|CAR09175.2| ATP-dependent RNA helicase [Escherichia coli ED1a]
          Length = 444

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 180/382 (47%), Gaps = 8/382 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +DVL SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAI 193
             +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ L+FSAT       
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQ 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               +  +         S   +     +      L  +   +V++L+   A  +IVF   
Sbjct: 198 DFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L E       L GE+ Q +R+ A++ + +GR  V +ATDVAARGID+PD+
Sbjct: 258 RERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA----ERLFREANVSVVW 369
             V + ++  + +  LHR GRT RAGRKG ++ ++  +           +       V+ 
Sbjct: 318 SHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 377

Query: 370 EPAPSVEAIRERDAQRILQDPL 391
           E  P   A  E+   +  +  L
Sbjct: 378 ELRPKTRAPSEKQTGKPSKKVL 399


>gi|73960318|ref|XP_537128.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           isoform 2 isoform 1 [Canis familiaris]
          Length = 620

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 187/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T +Q  ++   L  +DVL SA TGSGKT AF L + + 
Sbjct: 206 FEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVITR 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+  + +  +     +   + +GG+ +  +   
Sbjct: 266 ALCE------SKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYR 319

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL+  P   
Sbjct: 320 LRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDS 379

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   S +          A   +   I+N
Sbjct: 380 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + V++  E SQ ER N L+ + +G   V
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 500 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 559

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 560 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 592


>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
 gi|74701966|sp|Q4P9P3|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
 gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
          Length = 932

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 202/448 (45%), Gaps = 36/448 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +  ALS   +   T +Q   +   L  KD++  A TGSGKT AF +     L   
Sbjct: 339 DLSRPVLRALSSLSFHKPTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWR 398

Query: 66  NDRFSPASAP-LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +P  A    L +APTRELA+Q     + +   T +   +C+GG+SV  +  +L+  
Sbjct: 399 AKTRTPHEAKSRVLILAPTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLR 458

Query: 125 AHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
             +V+ TPGRL DH+R      +  ++ +V+DEAD ML+ GF D++ E +       R+ 
Sbjct: 459 PEVVIATPGRLIDHVRNSASFTLDDIEILVMDEADRMLEDGFADELNEIVKSCPKGARQT 518

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS------------- 229
           ++FSAT++  +  L +   K  VR+ +  +      +    V V  +             
Sbjct: 519 MLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGTGTGGVAGADGLSG 578

Query: 230 ------------------DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                              R   ++++         ++F  ++    +   V        
Sbjct: 579 IQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGLLGLSA 638

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
             L G+LSQ++R +AL   RDG+    +ATD+A+RG+D+  ++ VI+ ++    E  LHR
Sbjct: 639 GELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHR 698

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAE-RLFREANVSVVWEPAPS-VEAIRERDAQRILQD 389
            GRT RAGR G +V ++ +  +R  +  + + +   +     PS V A      +R+  +
Sbjct: 699 VGRTARAGRNGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAAHMCETLERLKPE 758

Query: 390 PLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
              +   + +EK +    +     E +A
Sbjct: 759 VDAVLREEKEEKALRIAEMELKKGENMA 786


>gi|300778725|ref|ZP_07088583.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
 gi|300504235|gb|EFK35375.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
          Length = 450

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 112/425 (26%), Positives = 199/425 (46%), Gaps = 17/425 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  I + L++      T +QE  L P L  +DV+  AQTG+GKT+A+ L +      +
Sbjct: 10  DLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLLPVL-----K 64

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             ++S    P  L + PTREL VQV   LE L       V    GG +++ ++    +G 
Sbjct: 65  TWKYSKTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGVYGGKNINTQKLLFNDGC 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+VGTPGR+ D      +++  ++ +++DE DEML+LGFR  +  I +   +KR+ ++F
Sbjct: 125 DILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQNILF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDN--AIVNILRYH 242
           SAT++ A+  +   Y  + V +++A        I+     +   + + N    +      
Sbjct: 185 SATMTEAVDEMLDVYFANPVEISLAKSGTPLEKIEQIGYKVENFNTKINLLEYLLKNDAD 244

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            +K  I   + + +   FTK+      Q   +    SQ  R  A++   +   R  I TD
Sbjct: 245 MSKVLIFNNNKKHADLLFTKIDELFPEQFDVIHSNKSQNYRLKAMKRFENEEIRGLITTD 304

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D+ ++  VI+ E    PE  +HR GRTGRA ++G ++  + +  +     +   
Sbjct: 305 VMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKEGKALVFVTKKEEPLILDIELL 364

Query: 363 ANVSVVWEPAP-----SVEAIRERDAQRILQDPLFLDSIQGD----EKKMVDVLLAKHDP 413
            +  + +   P     +   I     + ++++P  +   +G     EKK  +       P
Sbjct: 365 MDKELKFNEFPEGVKINPNKIASEKDEVVMKNPAQVKLNEGGGAFHEKKAKNTKENWGGP 424

Query: 414 EKIAA 418
            K  A
Sbjct: 425 SKRKA 429


>gi|156543626|ref|XP_001604556.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 990

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 234/578 (40%), Gaps = 50/578 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q +   L   G+   + +Q   +       D++V A++G+GKT  FG+     +  + 
Sbjct: 31  LSQQVLNGLLNCGFHKPSPIQHKSIPLGRCGFDLIVRAKSGTGKTAVFGIIALEMIDIK- 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S+   + +APTRE+A+Q+   +  L  +   +      G       R   +  H
Sbjct: 90  -----ISSVQVIILAPTREIAIQIKEVIASLGCEIKGLKVESFIGGVAMDIDRKKLSNCH 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I +G PGR+   I    L + H++  VLDEAD++++  F+ DI +I    P  R+++  S
Sbjct: 145 IAIGAPGRVKHLIDKGYLKMDHVRLFVLDEADKLMEESFQKDINYIYAKLPPNRQVISSS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS--------DRDNAIVNI 238
           AT    +    ++Y +  +  +  ++      +   A +V            +   ++ I
Sbjct: 205 ATYPGDLEIFLESYMQSPILSSADNDGPILVGLRQFASIVPQHLNAMRQVQIKVEELIKI 264

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
            +    K  +VF + +         +    F  + + G  +  +R +A++ +++ + R+ 
Sbjct: 265 FKKVPFKQCLVFTNYQTRAQSVCNKITSMGFPAIFIVGNQNMNKRLDAMKKLKNFKCRIL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+ ARGID  ++ LVI+ ++ S+    LHR GR GR G +G+++ ++ +      + 
Sbjct: 325 LTTDLTARGIDAENVNLVINLDIPSDSATYLHRIGRAGRYGSRGIAINIVAEKELNMFQD 384

Query: 359 LFRE---ANVSVVWEPAPSVEAIRERD---AQRILQDPLFLDSIQGDEKKMVDV------ 406
           L +     N S++  P    E +   D     RI      L+S    EK ++D       
Sbjct: 385 LLQSIGGKNFSIMKLPVDYPEDLWSTDDDSFDRIQATQYSLESHTELEKSIMDSVNGMCI 444

Query: 407 --LLAKHDPEKIAAG-------FLRIHRAGLCAPEEITPVSLVSGRDRFRDD-------S 450
              L K + E +           L+  +       EIT  S  S  ++  ++       +
Sbjct: 445 NTPLEKKNIENLTLKQTNHSNISLKPEKKRKFKSLEITESSNPSNLEKLNENTSFIVDLN 504

Query: 451 RAFKVGGGSRDNFKGSSWFSL----SVGSKQKAEARWLMPMLCRSSGINRQSIGAIR--V 504
              +      +      +  +    S GSK        +     S+G+    I  ++  +
Sbjct: 505 EIPQNNLSKTEIDSIEEFLRIQFIKSNGSKDS-NPVAEVDSKNASTGMVHNEI-DVQEMI 562

Query: 505 QPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPD 542
           +   +         +  +  +K++  +++K    E P+
Sbjct: 563 EKSKSHFNSDLFETEEFKALLKINSDLRMKSRNTENPE 600


>gi|121715182|ref|XP_001275200.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
 gi|134034067|sp|A1C5V3|DBP3_ASPCL RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119403357|gb|EAW13774.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
          Length = 503

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 193/396 (48%), Gaps = 19/396 (4%)

Query: 3   IFENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++P     +  +LS   + + T +Q A        +DV+  A+TGSGKT+AFGL   
Sbjct: 87  SFSHLPSCDSKLYSSLSS--FASPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL 144

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L         + P A+ I+PTRELA+Q+  ++       G+  A CI G     E+R
Sbjct: 145 KKILDSGKIKFKNARPAAVIISPTRELAMQIYDQISKYAGSIGIK-ATCIFGGVKKDEQR 203

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    A IVV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+ S+P  
Sbjct: 204 EALKSAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIISSTPDS 263

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           +R  +      P            +        + +++ R ++ I     +V   D++  
Sbjct: 264 KRQTVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQTVEVVQSHDKEYR 323

Query: 235 IVNILRYHGA-----KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +V +L  +          +VFC  +    R  ++L    F+V  + G+L+Q ER  +L  
Sbjct: 324 LVQLLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNKNFKVAGIHGDLNQHERFKSLDA 383

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G A V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG +G ++ +  
Sbjct: 384 FKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFT 443

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRERD 382
           +  + ++  L    + A   V  E       ++++ 
Sbjct: 444 ETDKAQSGALINVLKAAKQEVPQELLKFGTTVKKKQ 479


>gi|119331088|ref|NP_001073193.1| probable ATP-dependent RNA helicase DDX10 [Gallus gallus]
 gi|82197778|sp|Q5ZJF6|DDX10_CHICK RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|53133616|emb|CAG32137.1| hypothetical protein RCJMB04_18j24 [Gallus gallus]
          Length = 875

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/491 (24%), Positives = 211/491 (42%), Gaps = 21/491 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F + P  +   + L E  Y  +T +Q   +   L+ KDVL +A+TGSGKT+AF +  
Sbjct: 72  IQRFSDFPLSKKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPA 131

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++ A     L I+PTRELA Q  + L  +         + IGG  +  E 
Sbjct: 132 LELLY--RLQWTSADGLGVLIISPTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEES 189

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + +   ++      L           S L+ ++LDEAD +LD+GF D +  I+++ PK
Sbjct: 190 ERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPK 249

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +    D   ++  L  + N + 
Sbjct: 250 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLY 309

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF ++   V    +V  +      V+AL G+  Q +R          +
Sbjct: 310 SFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKK 369

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  VI  +   +    +HR GRT R    G ++  ++P   +
Sbjct: 370 AAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEK 429

Query: 354 RRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              E+L  R+  V+ +      +  I++R    + QD    +  Q      +  +    +
Sbjct: 430 GMVEQLAQRKVPVNEIKINPEKITDIQKRMQAFLAQDQELKEKAQRCFVSYLRSVYLMKN 489

Query: 413 PE----------KIAAGF-LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
            E          + A    L +        +    +S+    +R             S  
Sbjct: 490 KEVFDVFKLPLAEYALSLGLAMAPRVRFLQKVQKQLSVKETSERNPLKDTEQNKNTISSL 549

Query: 462 NFKGSSWFSLS 472
           N +G     ++
Sbjct: 550 NKEGMEECRIN 560


>gi|108798364|ref|YP_638561.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119867461|ref|YP_937413.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp.
           KMS]
 gi|108768783|gb|ABG07505.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS]
 gi|119693550|gb|ABL90623.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS]
          Length = 507

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 125/375 (33%), Positives = 186/375 (49%), Gaps = 10/375 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I  AL+E G     ++QE  L   L   D++  A+TG GKT AFG+ L  
Sbjct: 11  TFASLGVRDEICRALAEEGIHQPFAIQELTLPMALAGDDLIGQARTGMGKTYAFGVPLLQ 70

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-----GVVVAVCIGGVSVH 115
            +  + ++      P AL + PTREL +QV  +L             + V    GG    
Sbjct: 71  RVTTDTEKELSGI-PRALIVVPTRELCLQVHSDLSLAAKYLTAGDRKLSVVSIYGGRPYE 129

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DIE IL  
Sbjct: 130 PQIESLRKGADVVVGTPGRLLDLAQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILRQ 189

Query: 176 SPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           +P  R+ ++FSAT+   I T       Q   +R      +  H      A      D+  
Sbjct: 190 TPDTRQAMLFSATMPDPIITLARTFMNQPTHIRAESPQSSATHDTTAQFAYRAHALDKVE 249

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +  IL+  G    ++F  T+ +  +    LAE  F+V A+ G+L Q  R  AL+  R G
Sbjct: 250 MVSRILQAEGRGATMIFTRTKRTAQKVADELAERGFKVGAVHGDLGQGAREKALKSFRTG 309

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              V +ATDVAARGID+ D+  VI+ ++  + +  +HR GRTGRAG+ G++V ++  +  
Sbjct: 310 EVDVLVATDVAARGIDIDDITHVINFQIPEDEQAYVHRIGRTGRAGKTGVAVTLVDWDEL 369

Query: 354 RRAERLFREANVSVV 368
            R   + +   ++  
Sbjct: 370 PRWSMIDKALGLNTP 384


>gi|254975696|ref|ZP_05272168.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255093082|ref|ZP_05322560.1| putative ATP-dependent RNA helicase [Clostridium difficile CIP
           107932]
 gi|255314825|ref|ZP_05356408.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255517499|ref|ZP_05385175.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255650610|ref|ZP_05397512.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260683706|ref|YP_003214991.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260687366|ref|YP_003218500.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
 gi|306520544|ref|ZP_07406891.1| putative ATP-dependent RNA helicase [Clostridium difficile
           QCD-32g58]
 gi|260209869|emb|CBA63780.1| putative ATP-dependent RNA helicase [Clostridium difficile CD196]
 gi|260213383|emb|CBE05005.1| putative ATP-dependent RNA helicase [Clostridium difficile R20291]
          Length = 381

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 192/383 (50%), Gaps = 11/383 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE +     + + L ++   + T VQ  ++   ++ KD+L+++QTG+GKT+A+ L +
Sbjct: 1   MNTFEQLKISSTLIDGLKKQDITSPTEVQSLVIGNIIQNKDLLINSQTGTGKTLAYLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK---TGVVVAVCIGGVSVH 115
              +       +      AL +APT EL +Q+  ++E L      +   +A+        
Sbjct: 61  FEKID------TSKRETQALILAPTHELVMQITNQVELLAKNAELSVTSLALIGEVNIQK 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           + +       HIV+G+ GR+ D I+ K L   ++K +VLDE D +L+      IE I+ +
Sbjct: 115 QIKNIKAVKPHIVIGSCGRVLDLIKQKKLKSHNIKTIVLDEVDNLLNGKNITCIEDIIRT 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           + + R+++  SA+++ +   +     K+   +    +++ + +I++  +L  + D+   +
Sbjct: 175 TLRDRQIIGCSASLTDSTIKICDKLMKEFEIIKTKEKSQINPNINHSYLLGEIRDKFTFL 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L     K AIVF +   ++      L  H ++ + + G + +++R NA+   + G+A
Sbjct: 235 RKALAATNPKKAIVFVNNEKNIEVLVSKLNYHNYKAIGIFGNMEKEDRKNAINKFKLGKA 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           ++ I TD++ARG+D+ D+  V + +   +    LHR GRT R  R G ++ +I +     
Sbjct: 295 KILITTDLSARGLDIVDVSHVFNLDFPKSKNEYLHRCGRTSRGNRSGNTISIITKKELDI 354

Query: 356 AERLFREANVSVVWEPAPSVEAI 378
            + L +E ++ +  +   + E I
Sbjct: 355 IKDLQKEFSIVITPKTLQNGELI 377


>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
 gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
          Length = 391

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 120/365 (32%), Positives = 195/365 (53%), Gaps = 8/365 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ ++GYV  T VQ   +   +  KDV+  A TG+GKT AFG+ +   +  E+
Sbjct: 19  LSPELMRAIDKKGYVQATPVQGGSIPYFMEYKDVIAKAPTGTGKTFAFGIPMVEHIDPES 78

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      L +APTRELA+Q+  EL      K GV      GG  + ++   L+   
Sbjct: 79  RDV------QGLVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKKDP 132

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL DH++ + + +  ++ VVLDEAD MLD+GF  D+  ILD  PK+R + +F
Sbjct: 133 QIVVATPGRLMDHVKRRTVRLDKVQTVVLDEADRMLDMGFIKDVTRILDLMPKRRNLGLF 192

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SATIS  +  ++  YQ+D V + + ++     DI    + V  +++ + +V ++   G  
Sbjct: 193 SATISREVMDISWVYQRDPVEITVRADEENKPDITQYRLDVERNEKVDTMVRLMEMGGYD 252

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I FC+T+    R   +L        A+ G++ Q+ R   LQ  R+G+ RV  ATDVAA
Sbjct: 253 RVIAFCNTKNMTDRLAGLLRMRHITCEAIHGDIQQRVREKTLQKFREGQLRVLAATDVAA 312

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFREAN 364
           RG+D+ D++ V + ++    E  +HR GRTGRA R G++  ++       R + + +   
Sbjct: 313 RGLDIDDVDAVFNYDVPDENEYYIHRIGRTGRAKRHGVAFSLVSNITEGIRLDDIQKNTG 372

Query: 365 VSVVW 369
            ++ +
Sbjct: 373 NNIQY 377


>gi|242242830|ref|ZP_04797275.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
 gi|242233731|gb|EES36043.1| ATP-dependent RNA helicase [Staphylococcus epidermidis W23144]
          Length = 448

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 195/424 (45%), Gaps = 17/424 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + EA+    +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           + ++         P A+ +APTRELA Q+ +    L      +      G +   ++++ 
Sbjct: 66  IESDIQE------PQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   +++GTP R+ D      L+      +++DEAD M+DLG  +D++ I      + 
Sbjct: 120 CNHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDNEN 179

Query: 181 RM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               +FSATI  ++      Y      V +  +     +I++  +    S + +  + ++
Sbjct: 180 AHLAVFSATIPKSLQPFLNKYLSQPEFVVVDGKAHNKENIEFYLIPTKGSAKVDKTLELI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC++R +       L +   ++  + G L+ +ER   ++ +R+   +  I
Sbjct: 240 DILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     +
Sbjct: 300 ASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYGPDEESNITLI 359

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHD 412
                +  NV +       ++A   R +++   D L  +    ++   K+ V     K  
Sbjct: 360 EDKGYKFKNVDIKNGELKPIKAHNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKF 419

Query: 413 PEKI 416
            +++
Sbjct: 420 KQEV 423


>gi|325570266|ref|ZP_08146132.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156749|gb|EGC68923.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 448

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 206/469 (43%), Gaps = 27/469 (5%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+      I EAL+++ + N T VQE ++    + + V+  +QTGSGKT  F L L  
Sbjct: 2   SFESFKFQPFIYEALADKKFSNPTEVQEKLIPVIQKGRSVVGQSQTGSGKTHTFLLPLMD 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            + AE D          +  AP+RELA Q+ +  + +       + V           + 
Sbjct: 62  KIDAEKDEV------QVVITAPSRELATQIYQAAKQIGGFHDPEIRVSNFVGGTDKQRQL 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            R      H+V+GTPGR+ D I  + L +      V+DEAD  LD+GF ++++ I    P
Sbjct: 116 SRLQNQQPHVVIGTPGRILDMINEQALGVHTANVFVVDEADMTLDMGFLEEVDQIAGRLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y  + +   I S+      I+   +     + +  I  
Sbjct: 176 EKLQMLVFSATIPEKLRPFLKKYMANPLIEEIKSKAVISDTIENWLISTKGKNTNKLIYQ 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L       AIVF +T++ V   T  L E   +V  + G++S +ER   ++ +++   + 
Sbjct: 236 LLTTGHPYLAIVFANTKSRVDEITDYLKEQGLKVAKIHGDISPRERKRIMRQVQNLDYQY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+ ++ +  +HR GRTGR    G ++ +   + +   +
Sbjct: 296 VVATDLAARGIDIEGVSHVINAEIPADLDFFIHRVGRTGRNQMDGTAITLYDPSDEGAIQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            +  +  V    +   + E +   D  R               ++  +    + DP  I 
Sbjct: 356 AIE-DLGVVFQPKEIKNGEIVATYDRNR---------------RQKREKSRDELDPTLIG 399

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
               +  +      ++I        +++ + + R              S
Sbjct: 400 LVKKKKKKIKPGYKKKIQWAVDKKNKEKRKIERRQTTRTARKNKKNSNS 448


>gi|291438689|ref|ZP_06578079.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291341584|gb|EFE68540.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 689

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/427 (29%), Positives = 208/427 (48%), Gaps = 14/427 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 106 TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 165

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 166 TL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 222

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 223 LERGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGG 282

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL   Y  D V   + +     + + +  ++V    +D A V    
Sbjct: 283 QRMLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV--KPKDKAPVTAAI 340

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 341 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 400

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 401 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQIFRLM 460

Query: 361 REANVSVVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +A V  +           P +  I    +   +Q     ++ Q  E+++  +       
Sbjct: 461 EDAGVDAMRHIIQGGAAFDPELAEITGARSMTEVQAESAGNAAQQAEREVAQLTKELERA 520

Query: 414 EKIAAGF 420
           ++ AA  
Sbjct: 521 QRRAAEL 527


>gi|242043730|ref|XP_002459736.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
 gi|241923113|gb|EER96257.1| hypothetical protein SORBIDRAFT_02g009590 [Sorghum bicolor]
          Length = 512

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 188/388 (48%), Gaps = 11/388 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
            +P  + +  S   +   + +Q       L  +D +  A TGSGKT+AFG+     +   
Sbjct: 100 ELPSQVLDCCSA--FARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALMHIRKK 157

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +    + P  L ++PTRELA Q+   L    A  G+      GG     +   L++G
Sbjct: 158 VGGKAVKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSG 217

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ D I      ++ +  VVLDEAD MLD+GF  ++  IL  +   R+M+M
Sbjct: 218 VDIVIGTPGRMKDLIEMGVCRLNEVSFVVLDEADRMLDMGFEPEVRAILSQTSSVRQMVM 277

Query: 185 FSATIS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NIL 239
           FSAT                    V  + +   + D+     ++    RD+ ++   +  
Sbjct: 278 FSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLALLDKY 337

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               +   +VF   +   +R   +L    ++ V++ G+ +Q +R+ AL + ++G+  + I
Sbjct: 338 HQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGKCPLMI 397

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  +  A  L
Sbjct: 398 ATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQANKALAGEL 457

Query: 360 ---FREANVSVVWEPAPSVEAIRERDAQ 384
               REA+  V          +++++++
Sbjct: 458 VNVLREADQVVPPALMKFGTHVKKKESK 485


>gi|239930343|ref|ZP_04687296.1| ATP-dependent RNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 612

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/427 (29%), Positives = 208/427 (48%), Gaps = 14/427 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 29  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 88

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 89  TL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 146 LERGVDILVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGG 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I TL   Y  D V   + +     + + +  ++V    +D A V    
Sbjct: 206 QRMLFSATMENEIKTLVDRYLNDPVSHEVDAAQGAVTTMSHHILVV--KPKDKAPVTAAI 263

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 264 ASRKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVA 323

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 324 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLALPHQRRQIFRLM 383

Query: 361 REANVSVVWEPA-------PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +A V  +           P +  I    +   +Q     ++ Q  E+++  +       
Sbjct: 384 EDAGVDAMRHIIQGGAAFDPELAEITGARSMTEVQAESAGNAAQQAEREVAQLTKELERA 443

Query: 414 EKIAAGF 420
           ++ AA  
Sbjct: 444 QRRAAEL 450


>gi|182437685|ref|YP_001825404.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466201|dbj|BAG20721.1| putative ATP-dependent RNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 754

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 209/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 80  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAAL---A 136

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 137 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 196

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 197 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 256

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     + + +  ++V    +D A V          
Sbjct: 257 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVV--KPKDKAPVTAAIAARKGR 314

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 315 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 374

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V 
Sbjct: 375 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGVD 434

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                           A+  +     L  +Q D         A+ +   +     R+ R 
Sbjct: 435 ASRHIVQGAGVFEPEVAE--ITGARSLTEVQADSANNAAKQ-AEREAADLTKQLERVQRR 491

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
            +   EE   +   + R+R  D 
Sbjct: 492 AVELREEADRLVARAARERGDDP 514


>gi|68076513|ref|XP_680176.1| RNA helicase-1 [Plasmodium berghei strain ANKA]
 gi|56501072|emb|CAH93553.1| RNA helicase-1, putative [Plasmodium berghei]
          Length = 632

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 187/389 (48%), Gaps = 27/389 (6%)

Query: 6   NIPQVIGEALSERGY-------------VNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ++P  I +   +  +                T +Q   L   L  +D++  A TGSGKT+
Sbjct: 177 DVPPPI-KNFKDMKFPKAILKGLKKKKINKPTQIQMQGLPSILIGRDIIGIAFTGSGKTI 235

Query: 53  AFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLY------AKTGVV 104
            F L L  T L    R        PL L I P+RELA Q    +++            + 
Sbjct: 236 VFVLPLIMTCLEAELRCPIEEGEGPLGLIICPSRELASQTHNIIKYFCEYLYKDKFPMLK 295

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
               IGGVS + + ++++ G H++V TPGRL D +  K + +   + +  DEAD ++DLG
Sbjct: 296 SLCVIGGVSTYEQGKEIKKGVHMLVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLG 355

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           F ++I  +LD+   +R+ L+FSAT+   I   AK+   + + +N+      + D+     
Sbjct: 356 FEEEIRNVLDNFSSQRQTLLFSATMPRKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVE 415

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V    + + ++ +L+  G    ++FC  +  V    + L       +A+ G L Q ER 
Sbjct: 416 YVKEEFKLSYLLQVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGINAIAIHGSLGQTERL 474

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+ + R+G   V + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++
Sbjct: 475 EAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIA 534

Query: 345 VFVIPQNMQR----RAERLFREANVSVVW 369
              I +N +       + L  EA   +  
Sbjct: 535 TTFINKNQEEAILLDLKALLIEAKQKIPP 563


>gi|328881710|emb|CCA54949.1| ATP-dependent RNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 522

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 188/383 (49%), Gaps = 12/383 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +   L E+G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 11  FADLDMPEGLLRTLGEQGVTEPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 70

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R + + APLAL + PTRELA QV   L    A   + +   +GG+S+ R+   L
Sbjct: 71  ---TAGRRAESGAPLALVLVPTRELAQQVTDALTPYAAALRLRITTVVGGMSISRQSSAL 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA +++ TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       +
Sbjct: 128 RRGAEVLIATPGRLHDLIDRGDCRLDQVAVTVLDEADQMADMGFLPQVTKLLKQVEPGGQ 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            L+FSAT+   +  L K +  D V  ++       + +++  + V     D   V +   
Sbjct: 188 RLLFSATLDRNVDRLVKMFLDDPVVHSVDPSAGAVTTMEHHVLYVMDET-DKKAVTLKIA 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ SV R  K L  +  +   L G  SQ +R+  L   + G+    +AT
Sbjct: 247 ARDGRTILFLDTKRSVDRLVKRLLANGVRASGLHGGRSQPQRNRTLDQFKSGQVTTLVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL++V++ +   + ++ LHR GRT RAG  G    ++    +R   RL  
Sbjct: 307 NVAARGIHVDDLDMVVNVDPPMDHKDYLHRGGRTARAGESGSVFTLVLPEQKRDMGRLMS 366

Query: 362 EANVSVVWEPAPSVEAIRERDAQ 384
            A +S      P    I+  D Q
Sbjct: 367 HAGIS------PRTAQIKSSDEQ 383


>gi|255732942|ref|XP_002551394.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
 gi|240131135|gb|EER30696.1| hypothetical protein CTRG_05692 [Candida tropicalis MYA-3404]
          Length = 880

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 115/394 (29%), Positives = 190/394 (48%), Gaps = 22/394 (5%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            NI  VI + L    +   +S+Q   L   L  +DV+  A+TGSGKT+++ L +   +  
Sbjct: 297 SNISSVIHDKLK---FEKPSSIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMIRHI-Q 352

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQN 123
           +  +      P+ L ++PTRELA+Q+ +E+           V  C GG S+  +  +L+ 
Sbjct: 353 DQRKLESNEGPIGLILSPTRELALQIQKEILHFTKDNPNLRVCCCYGGASIESQINELKK 412

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           G  IVV TPGR+ D +      +++LK    VVLDEAD M DLGF   +  I       +
Sbjct: 413 GVEIVVATPGRMIDLLAANSGRVTNLKRTTYVVLDEADRMFDLGFEPQVTKIFTQIRPDK 472

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----------SD 230
           + ++FSAT    +  LAK    + V + +   +   S+I  + VL              +
Sbjct: 473 QTVLFSATFPKKMEVLAKKILVNPVVIIVGGISVVASEIKQKVVLFNHTSDDIYKTERMN 532

Query: 231 RDNAIVNILRYHGAKNAI-VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +   +++  +    K+ I VF   ++        L    +  VAL G   Q +R  A++ 
Sbjct: 533 KLYEVLSEYQMFNPKSKILVFVEKQSDADELVTDLLRSGYPSVALHGGKDQMDRKYAIKE 592

Query: 290 MRDGRA--RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
                +   + +AT VAARG+D+  L LVI+ +  ++ E+ +HR GRTGRAG KG ++  
Sbjct: 593 FSSNDSGLNILVATSVAARGLDVKSLGLVINFDPPNHMEDYVHRVGRTGRAGSKGQAITF 652

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           +  N +R    L +   +S   E  P + AI ++
Sbjct: 653 VCSNQEREITSLVKALRLS-KAEVDPDLAAIADK 685


>gi|332010396|gb|AED97779.1| DEAD-box ATP-dependent RNA helicase 31 [Arabidopsis thaliana]
          Length = 788

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 178/400 (44%), Gaps = 19/400 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F++ P   +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     
Sbjct: 322 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 381

Query: 62  LLAENDRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
           ++           P  LAL I PTRELA Q   E   L      +    V  G      +
Sbjct: 382 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQ 441

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
           +R   N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ 
Sbjct: 442 KRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 501

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + PK+R+  +FSAT+   +  +     +                      +  ++  D  
Sbjct: 502 AVPKERQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRH 561

Query: 235 I-------VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
                      +  +     IVFC+T         +L E    V  +     Q  R+   
Sbjct: 562 FSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVS 621

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              R  +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + +
Sbjct: 622 NEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILL 681

Query: 348 IPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +    +     L    ++ +   P PS++    +  Q+ L
Sbjct: 682 LAPWEEYFLSSL---KDLPITKSPLPSIDPETVKKVQKAL 718


>gi|307328239|ref|ZP_07607417.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
 gi|306886073|gb|EFN17081.1| DEAD/DEAH box helicase domain protein [Streptomyces violaceusniger
           Tu 4113]
          Length = 503

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 187/367 (50%), Gaps = 7/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P+ +   L+ +G      +Q A L   L  +D L   +TGSGKT+AFGLAL
Sbjct: 74  VEAFADLDMPKQLLATLTAQGVSVPFPIQGATLPNTLAGRDALGRGRTGSGKTLAFGLAL 133

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PLAL + PTRELA QV   L        + +A  +GG+ + R+ 
Sbjct: 134 LAR--TAGQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMPIGRQA 190

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    
Sbjct: 191 NVLRGGAEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLDQVRP 250

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 251 EGQRMLFSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHRTTTE- 309

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 310 -IAAREGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVL 368

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 369 VATNVAARGIHVDDLDLVVNIDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRDMTR 428

Query: 359 LFREANV 365
           L   A +
Sbjct: 429 LMTAAGI 435


>gi|258513565|ref|YP_003189787.1| DEAD/DEAH box helicase domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777270|gb|ACV61164.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 383

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 183/371 (49%), Gaps = 10/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE +     +   L +      T +Q  ++   L+ KD++  ++TG+GKT+A+ L L 
Sbjct: 3   TTFEKLGTNARLVTGLQKININVPTDIQTKVIPLALQGKDIIGQSETGTGKTLAYLLPLL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL--YAKTGVVVAVCIGGVSVHRE 117
             L              A+ +APT+EL++Q+ R +E +   +   V  A  IG V++ R+
Sbjct: 63  QKLDNTK------RETQAVILAPTQELSIQIQRLIEAMISGSDIPVTSAPIIGNVNIARQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+   HI+VG+  R+ D +  K +    +K +V+DEAD +LD      I+ ++ ++ 
Sbjct: 117 VEKLKEKPHIIVGSCSRILDLVEKKKIAAQKIKTIVIDEADRLLDDKNLAQIKALIKTTL 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K R++L+FSATI       AK   ++   + I +      +I +   L    D+   +  
Sbjct: 177 KDRQILLFSATIPGKTLERAKEMLQNPQIITIQANLEITPNISHIYFLTEYRDKIKVLRK 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++     + A+VF +   ++   ++ L  H  +   L   L ++ER  A++  R  + ++
Sbjct: 237 LVGIINVERALVFVNRGDNIELTSEKLNYHGLKTAGLHAGLLKEERKKAIEDFRQNKIQL 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+  L  V + ++  +P+  LHR GRTGRAG+ G ++ ++ +       
Sbjct: 297 LVATDIAARGLDIAGLSYVFNLDMPEDPQAYLHRVGRTGRAGKTGTAISIVARQEAALIN 356

Query: 358 RLFREANVSVV 368
           +  +   +   
Sbjct: 357 KYEKVLKIKFA 367


>gi|300176015|emb|CBK22232.2| unnamed protein product [Blastocystis hominis]
          Length = 426

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 173/374 (46%), Gaps = 8/374 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  +   I +A+S+ G+ + + VQ A +   +  KDVL  A++G GKT  F ++   
Sbjct: 48  FKDFY-LKDEILKAISDCGFEHPSEVQHACIPRAITNKDVLCQAKSGMGKTAVFVISTLQ 106

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            L  + +          L IA TRELA Q+  E +            V  GG ++  +R 
Sbjct: 107 MLKDDPENQD----IQVLVIAHTRELAFQIQNEYKRFTKFMPNVRTEVFFGGRNIQADRE 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-LDLGFRDDIEFILDSSPK 178
            L     IVVGTPGR+ D I+   + +  L+  V+DE D +   +  R  ++ I  + P 
Sbjct: 163 ALNTHPAIVVGTPGRVEDLIKRGWMKVDKLRHFVVDECDHIITSINMRAQLQSIFTACPI 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            ++++MF+AT+ P    +   + KD + + +         +    + +  + +   ++++
Sbjct: 223 DKQVMMFTATLPPEAKAVCLRFMKDPLMIELDESALTLHGLQQYYLTIYDNQKTKKLMDL 282

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        ++F    A     + +L    F    ++G++S ++R    +  +    R+ 
Sbjct: 283 LDTLEFNQIVIFVRNSARARELSNILNRDQFNNTCITGDMSTEDRLEHYKRFKGFDYRIL 342

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAE 357
           ++T++  RGID+  + +VI+ +        LHR GR GR G KG+++  +  +  ++R E
Sbjct: 343 VSTNLFGRGIDVDKVNVVINYDFPETANEYLHRVGRAGRFGTKGLAISFVTTEEDKKRME 402

Query: 358 RLFREANVSVVWEP 371
            +  +  V V   P
Sbjct: 403 EVQMKFAVDVPPLP 416


>gi|24373075|ref|NP_717118.1| DEAD-box ATP dependent DNA helicase [Shewanella oneidensis MR-1]
 gi|24347255|gb|AAN54562.1|AE015596_2 ATP-dependent RNA helicase, DEAD box family [Shewanella oneidensis
           MR-1]
          Length = 456

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 197/417 (47%), Gaps = 12/417 (2%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F+   +   +  A++E GY  LT VQ+ ++   L  KD++  AQTG+GKT AF L +
Sbjct: 1   MK-FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPV 59

Query: 59  ASTLLAENDRFSPASAPL--ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
              L A+     PA  PL  AL + PTRELA+QV   ++       +      GG +++ 
Sbjct: 60  LEQLAAK-----PADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNP 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R+ ++ G  I+V TPGRL D I    L++S +  +V+DEAD MLDLGF  DIE +    
Sbjct: 115 QRKGVEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLI 174

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
               + ++FSAT S A+  L+ +   +  +    +EN   S ++     V    +   + 
Sbjct: 175 APVHQTMLFSATYSDAVKQLS-HKMLNQPQWVNVAENTTASTVEQLVYRVDKRRKAELLS 233

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            ++  +  +  +VF ST+       + L           G+ +Q  R+  L   + G+ R
Sbjct: 234 ELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLR 293

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+D+  L LVI+ EL    E+ +HR GRTGRAG  G ++  +        
Sbjct: 294 VLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEML 353

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
             +       +     P  E      A R    P+     +   K   D  + K   
Sbjct: 354 AEIEALIGEKLPVTVQPGYEEGTPLPA-RYRDLPVVTTKTKWSYKAPKDRTIGKSSA 409


>gi|330834640|ref|YP_004409368.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
 gi|329566779|gb|AEB94884.1| DEAD/DEAH box helicase domain-containing protein [Metallosphaera
           cuprina Ar-4]
          Length = 348

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 100/368 (27%), Positives = 162/368 (44%), Gaps = 20/368 (5%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F+ +   +  AL E  Y   T VQE  +   +  K V+V A+TGSGKT ++ + +    
Sbjct: 1   MFDQLSDQLKRALEEIDYQRPTKVQELTIPVLMSGKSVIVQAKTGSGKTASYLIPVLERE 60

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                          L + PTRELA QV  E + L     + + V IGGV   ++ R+  
Sbjct: 61  ED------------TLILTPTRELADQVAYEAKRLGKYKRMSIGVIIGGVGYEKQERES- 107

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             + I+VGTPGR+ D      L+++  K  V+DE D MLD+GF +D+  IL  +      
Sbjct: 108 -NSDIIVGTPGRILDLWGKGVLDLARFKVAVVDEVDRMLDMGFIEDVRMILSKTDADLFG 166

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +   S          +  +       +  +     Y              V  +   
Sbjct: 167 FFSATVPSEVKKLAEGFARDASFLKVDEYKPVEIEHEFYPVRDNWNEK-----VYNVLKD 221

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF +T++        +++ L   +   G++SQ  R   L   R G + V I+TD
Sbjct: 222 AKSKTIVFTNTKSRAEALYDRVSDRLTVSLLH-GDMSQGARRRNLMNFRKGYSDVLISTD 280

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+ D+E VI+ +L  + +  +HR GRTGR GR G ++    +  +    R+   
Sbjct: 281 LAARGIDVIDVEQVINFDLPRDLDTYIHRVGRTGRLGRTGRAISYYTRREEEMVSRIKNL 340

Query: 363 ANVSVVWE 370
               ++ E
Sbjct: 341 LKSPLINE 348


>gi|86130411|ref|ZP_01049011.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
 gi|85819086|gb|EAQ40245.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
          Length = 428

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 113/416 (27%), Positives = 187/416 (44%), Gaps = 11/416 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
           I EAL+    V  T +Q+  +   L  +KDV+  AQTG+GKT+AFG+ L   +   N   
Sbjct: 14  IQEALAALDIVQPTDIQQQAIPALLTSKKDVVALAQTGTGKTLAFGVPLLQLIDRTNPTV 73

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVHRERRDLQNGAHIV 128
                  A+ + PTREL  Q+   +    A+   V A    G + V      L+  A IV
Sbjct: 74  ------QAVILVPTRELGQQIYSNIVAYAAQLPEVSAAVFYGGIPVKENIERLKEPAQIV 127

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           + TPGRL D +  K +NIS    +VLDEADEM+          +      +R  L  +  
Sbjct: 128 IATPGRLIDLMERKAINISQANYLVLDEADEMVSALKNSIDVIVETMPNNRRTFLFSATM 187

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
                  +     K+ + +     N     I +  V+V   ++ + +++ L     +  I
Sbjct: 188 PGTVKQLVQNYLSKNPLEITAERANLASHKITHDYVVVEPIEKLDVLMHFLNSKIGERGI 247

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           +FC T+A+V++  K LA + F   AL G LSQ  R   +   R+G   + +ATD+AARGI
Sbjct: 248 IFCKTKAAVNKLAKNLAINKFSSGALHGSLSQAIRDRMMGQFREGHIDILVATDLAARGI 307

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ ++  V++  L    +  +HR+GRT RAG+ G ++ V+ Q           E  ++  
Sbjct: 308 DVKEISYVVNYHLPEFYDMYVHRTGRTARAGKTGYALTVLQQEEVAEIPEFEEELGITFS 367

Query: 369 WEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFL 421
                S + I + +     R +        +  + ++ V  +      E++    L
Sbjct: 368 AFAKASPQEIADNNLILWARKIFKTKPNRELSPELREKVHKVFHHLTKEELIDKLL 423


>gi|321250096|ref|XP_003191688.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
 gi|317458155|gb|ADV19901.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
          Length = 442

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 170/372 (45%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    +   +
Sbjct: 66  LKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVD 125

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          V            +      + +
Sbjct: 126 GEVS------IIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKE 179

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVVGTPGR    +R K LN S +K  VLDE D+ML+    R D++ I  ++P  ++
Sbjct: 180 KCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQ 239

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I    K + +  + + +  E +       +  L      ++  + ++L 
Sbjct: 240 VMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQFYLKLEEREKNRKLNDLLD 299

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                   +F  +    ++   +L E  F  + +   L Q ER +  Q  +    R+ +A
Sbjct: 300 NLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVA 359

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TD+  RGID+  + +VI+ +  ++ ++ LHR GR GR G KG+++  +  +  Q   +++
Sbjct: 360 TDIFGRGIDVERVNVVINYDAPADADSYLHRVGRAGRFGTKGLAISFVSNDADQEVLQKI 419

Query: 360 FREANVSVVWEP 371
                V++   P
Sbjct: 420 QERFTVAIPTLP 431


>gi|221504668|gb|EEE30341.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
          Length = 522

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 183/379 (48%), Gaps = 27/379 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 108 LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 167

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 168 PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 227

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
           A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 228 AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 287

Query: 179 ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                              R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 288 DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 347

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
            R   V  + +    +  +  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 348 QRVEFVPEARK-KQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 406

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 407 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 466

Query: 341 KGMSVFVIPQNMQRRAERL 359
           KG+++  + +        L
Sbjct: 467 KGLAISFLTEEDSGIFYDL 485


>gi|327254038|gb|EGE65667.1| ATP-independent RNA helicase dbpA [Escherichia coli STEC_7v]
          Length = 432

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 189/363 (52%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQKID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AIT ++   Q
Sbjct: 115 GTVSLDALNMLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAITAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNDIGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P   +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +   V        
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPVNSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|324505559|gb|ADY42388.1| ATP-dependent RNA helicase DDX3X [Ascaris suum]
          Length = 788

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 180/397 (45%), Gaps = 28/397 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           + +F ++     I E +   GY   T VQ+  +   +  +D++  AQTGSGKT AF + L
Sbjct: 284 ISLFADLKLHPWIEENIKLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPL 343

Query: 59  ASTLLAENDRF----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC 108
            + +L                     P AL ++PTREL++Q+  E      +T +  A+ 
Sbjct: 344 INNVLQNGPEALYRSTTQQNGRRKQYPAALILSPTRELSLQIYNESRKFAYRTPITSALL 403

Query: 109 IG-GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            G   +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF  
Sbjct: 404 YGGRENYREQINKLRLGVHILIATPGRLIDVMEQGYIGLDGCRFLVLDEADRMLDMGFEP 463

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTL-----AKNYQKDAVRVNIASENRQHSDIDYR 222
            I  I+D S    +    +A  S                 + V + +        +I  +
Sbjct: 464 QIRQIVDLSEMPPKGKRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQK 523

Query: 223 AVLVALSDRDNA-------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
            V V   ++ +         V +         +VF  T+   S     L +  + VVA+ 
Sbjct: 524 IVWVEEHEKKSFLMDLLDAGVKVAYSEPTALTLVFVETKRGASDLAYYLQKDGYNVVAIH 583

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+L Q ER   L+  R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRT
Sbjct: 584 GDLKQFEREKHLETFRSGVAPILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRT 643

Query: 336 GRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVW 369
           GR G  G++        +N+ R    L  EAN  +  
Sbjct: 644 GRVGNVGLATSFFNDKNRNIARDLAELIVEANQELPE 680


>gi|329767235|ref|ZP_08258762.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
 gi|328836902|gb|EGF86549.1| hypothetical protein HMPREF0428_00459 [Gemella haemolysans M341]
          Length = 443

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 191/388 (49%), Gaps = 13/388 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE     + + +A+ + G+ N T +QE + +P L+ K+++  +QTGSGK+ +F L + 
Sbjct: 4   KSFEQYKFNEFVNKAVIDLGFDNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
           S L     +        ++ +APTREL+ Q+      + + +   + + +CIGG  ++R+
Sbjct: 64  SKLDVAKKK------TQSIILAPTRELSRQLYDMALHIASFSEEDIKITLCIGGQDLNRD 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              + N  HI++GTP R+ +  R   L I  ++++V+DE D M+DLGF +D++ I   + 
Sbjct: 118 IERVSNAPHIIIGTPTRVLELDRASALAIKEVESLVIDECDMMIDLGFMEDVDKISKRAA 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + L+FSATI           +       I  +N +   I+Y  +    S R   +  
Sbjct: 178 ENCQFLVFSATIP--AQMNHFLKKYLKNAQYIEVDNAKFGKIEYILIPEKSSSRLEKLHE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I        A++F + +  V   +  L      V  L G+L+ +ER    + + +     
Sbjct: 236 ITTVINPYLALIFANKKTEVEEVSSYLISKGLNVGVLHGDLTPRERKQMQRRINNLDFTY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+D+ +RGID+  +  VI+  + ++ +  +HR+GRTGRAG  G  + +     + + +
Sbjct: 296 VVASDLMSRGIDIEGVSHVINFNIPNDLDFFIHRAGRTGRAGLSGDCITIYNNKDEEKLQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
            L +   +    +   + E +  +D  +
Sbjct: 356 DLEKR-GIEFNHQDIRNGEFVEAKDRNK 382


>gi|329905038|ref|ZP_08273973.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547774|gb|EGF32547.1| ATP-dependent RNA helicase DbpA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 461

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 124/371 (33%), Positives = 194/371 (52%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +T +Q   L   L  +D++  A+TGSGKT AFG+ +   L    
Sbjct: 13  LSPSMLANLDSLGYHEMTPIQAKSLPVILDRRDLIAQAKTGSGKTAAFGIGILQRLNPT- 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                  A  AL I PTRELA QV  EL  L        +    GG  +  +   L++GA
Sbjct: 72  -----WFAIQALVICPTRELADQVSNELRRLARFADNTKILTLCGGAPMRPQIASLEHGA 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+VGTPGRL DHI    +++S ++ +VLDEAD M+D+GF ++I  I+ + P +R+ L+F
Sbjct: 127 HIIVGTPGRLRDHIGRGSIDLSTVQTLVLDEADRMVDMGFYEEISGIVSACPTRRQTLLF 186

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + +D   +         + I+ R   V   DR++A+  +L  +   
Sbjct: 187 SATYPDDIRKSSAPFLRDPTEI-TVEAQHDDNRIEQRFYEVGYDDRNDAVGRLLNNYKPA 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           +A+ FC+T+         L    F  +AL GEL Q+ER   L +  +G   V +ATDVAA
Sbjct: 246 SALAFCNTKIHCRELADELRAQGFSAMALYGELEQRERDEILVLFANGSCSVLVATDVAA 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  LE+VI+ ++S + E  +HR GRTGR   +G+++ +   N ++  + +    + 
Sbjct: 306 RGLDIQSLEMVINVDVSKDTEVHIHRVGRTGRGAARGLALSLCAPNEKKWVKLIEDYQHG 365

Query: 366 SVVWEPAPSVE 376
            V W     +E
Sbjct: 366 PVSWFDLADLE 376



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 4/76 (5%)

Query: 465 GSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGVDL 520
                 +  G K K     L+  L   +G+ ++ +G I V   +T+V     ++      
Sbjct: 386 PMVTLLIMGGKKDKLRPGDLLGALTGDAGLTKEQVGKINVFEFMTYVALDRRIAKKAFAK 445

Query: 521 LRRTVKLDKGIQLKYL 536
           L       +  +++++
Sbjct: 446 LEGGNIKGRNFKMRFI 461


>gi|291000746|ref|XP_002682940.1| predicted protein [Naegleria gruberi]
 gi|284096568|gb|EFC50196.1| predicted protein [Naegleria gruberi]
          Length = 483

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 102/389 (26%), Positives = 167/389 (42%), Gaps = 39/389 (10%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA------STLLAENDR-FSP 71
                T +Q   L   L  +DV+  A TGSGKT+ F L +         L A   +    
Sbjct: 55  NIETPTPIQMQGLPCLLEGRDVIGIAFTGSGKTLVFSLPIIMYSYLNEHLYATRPKSIRR 114

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLY----------AKTGVVVAVCIGGVSVHRERRDL 121
            + PL L + P RELA Q    +E+ +          ++T  +      G        + 
Sbjct: 115 NNGPLGLILCPNRELAKQTFEFIEYFFNGINEQEKKRSQTFKLNVSLCMGGIKEERIFNQ 174

Query: 122 QN--------------GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD 167
            N                HIVV TPGRL   +    + ++  K V +DEAD ++DLGF +
Sbjct: 175 SNSNSRYYSSNSSGGGYIHIVVATPGRLIQMLNENKIQLNDCKYVCMDEADRLIDLGFEE 234

Query: 168 DIEFILDSSP---KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           DI+ I           + + FSAT+   I  LA N     + VN+      + D+     
Sbjct: 235 DIKTIFQHLNLNNNHIQKVFFSATMPEKIQNLAMNTLNQPIIVNVGRAGAVNLDVIQEVE 294

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V   D+   ++  L+       ++F   ++ V    + L     + V++     Q ER 
Sbjct: 295 YVQEEDKIVYLLQALQKTPPP-VLIFSQNKSEVDTICEYLLLKGVEAVSIHSSKDQSERE 353

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+   + G+  V +ATD+ ++GID P+++ VI+ ++    EN +HR GRTGR G+ G++
Sbjct: 354 YAIDSFKQGKKHVLVATDIVSKGIDFPNVKHVINFDMPREIENYVHRIGRTGRNGKTGLA 413

Query: 345 VFVIPQNMQRRA----ERLFREANVSVVW 369
              I +N   +     + L +EAN  +  
Sbjct: 414 TTFINKNQSEQILLDLKYLLKEANQRIPP 442


>gi|295837571|ref|ZP_06824504.1| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
 gi|295826577|gb|EDY45280.2| ATP-dependent RNA helicase [Streptomyces sp. SPB74]
          Length = 738

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 124/444 (27%), Positives = 204/444 (45%), Gaps = 9/444 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L + L    
Sbjct: 60  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQL---A 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+    P  + + PTRELA+QV   L+       + + V  GG S+  +   L+ G  
Sbjct: 117 GGFTDKKKPRGVILTPTRELAMQVADALQPYGDVLDLRMKVVCGGTSMGNQIYALERGVD 176

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++  ++  +LDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 177 ILVATPGRLRDLINRGACSLEKVQIAILDEADQMADLGFMPEVTELLDQVPAGGQRMLFS 236

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L K Y  + V   + +     + + +  ++V   D+    V          
Sbjct: 237 ATLENEIDALVKRYLVNPVAHEVDAAQGAVTTMSHHILIVKPRDKAP--VTAAIASRKGR 294

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 295 TIIFVRTQLGADRVAEQLRDAGVKADALHGGMTQGARTRVLADFKDGYVNALVATDVAAR 354

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 355 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 414

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                     A+ + +   I       +     E        A+ + E +     R  R 
Sbjct: 415 AARHQIGG--AVFDAELAEITGARSMTEV--QAESAGQSAKQAEREVEDLTRELERAKRR 470

Query: 427 GLCAPEEITPVSLVSGRDRFRDDS 450
                 E   +   + R+R  +  
Sbjct: 471 AGEYRAEADRLVARAARERGEEPP 494


>gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
 gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus 16]
          Length = 417

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 188/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L E  Y+  T +Q   +   L  KD +  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEELEYLQPTPIQSYAIPHVLEGKDFVGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDR-FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRE 117
            +L + D   S  +    L + PTRELA QV   ++                GGVSV+ +
Sbjct: 69  KILEQGDSNRSRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKVKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G+ I+V TPGRL D +    + +  +K +VLDEAD ML LGF D++  IL   P
Sbjct: 129 MLSLRGGSDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTLA++   D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPEKVTTLAQHLLSDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKKHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    +  E     E
Sbjct: 367 VIEKKNKFQLEREQVEGFE 385


>gi|168213797|ref|ZP_02639422.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
 gi|170714741|gb|EDT26923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens CPE str. F4969]
          Length = 405

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L  K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 9   LSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 69  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D+  ++ S P+  + L+
Sbjct: 123 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRDTQKLI 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 183 FSATMNEKALENADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 243 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 303 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 362

Query: 364 NVSVVW 369
            + +  
Sbjct: 363 KIKIPR 368


>gi|332374708|gb|AEE62495.1| unknown [Dendroctonus ponderosae]
          Length = 470

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 117/431 (27%), Positives = 195/431 (45%), Gaps = 23/431 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F  +     I +     G    T +Q   +   L  K  + +A+TGSGKT+AF L +
Sbjct: 5   LSNFSQLKLQNWIVKQCHSIGVKRPTPIQANCIPKILEGKTCIGAAKTGSGKTLAFALPI 64

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +           AL + P RELA Q+  +   L     +   V +GG+ +  + 
Sbjct: 65  VQKLYEDP------YGIYALVLTPIRELAFQIADQFAILGKPMNMRTCVVVGGMDMVEQG 118

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R L    H+VV TPGRL DH+ G      S +K +V+DEAD +L   F D I+ I    P
Sbjct: 119 RQLSKVPHVVVATPGRLVDHLEGCDTFTLSRIKFLVIDEADRLLGGLFDDQIKRIFSVLP 178

Query: 178 KKRRMLMFSATISPAITTLAK--NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           K R+ + FSAT++  + TL K              SE    + +  + +L     +D  +
Sbjct: 179 KTRQSIYFSATMTDTLQTLKKLVAEDAFFYEDIGPSEAVTVAGLTQQYMLCPAYVKDAYL 238

Query: 236 V----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
           V      +  +     ++F +T  +    +  L E     VAL   + Q +R  AL   +
Sbjct: 239 VELLRIFISENDQGTVMIFTNTCKNCQLLSITLNEVGMDNVALHAMIPQAQRLAALNRFK 298

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
             R ++ IATDVA+RG+D+P+++L+I+  +   P+  +HR GRT RAGR+G +V ++   
Sbjct: 299 SNRVKILIATDVASRGLDIPNVQLIINHNVPRIPKEYVHRVGRTARAGRQGRAVTLVTPY 358

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDP---LFLDSIQGDEKKMVD--- 405
             +    +       +      + + + E   +  +      + LD+    EKKM++   
Sbjct: 359 DLKLLLAIEELIKTKLTECKV-NDKEVAEIFTEVSVTKSEAYMKLDATDFFEKKMINLKK 417

Query: 406 -VLLAKHDPEK 415
             +L   DPE+
Sbjct: 418 KWILEGLDPEE 428


>gi|312139811|ref|YP_004007147.1| dead/deah box helicase [Rhodococcus equi 103S]
 gi|311889150|emb|CBH48463.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S]
          Length = 700

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 152/628 (24%), Positives = 245/628 (39%), Gaps = 87/628 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +  AL+       + +Q   +   +  K++L  AQTGSGKT+AFGL + + L    
Sbjct: 8   LPEPVVAALARNSITVPSPIQAMAIPDAIAGKNILGRAQTGSGKTLAFGLPMLARLARHE 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           DR +P   P AL + PTRELA QV   L       G+ V   +GG    ++   L+ G  
Sbjct: 68  DRPAPKR-PRALVLVPTRELAFQVVDSLTPYAGSLGLNVRAAVGGTPFTKQVDQLRRGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL DH+R     +  ++   LDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 127 ILVATPGRLGDHLRQNTCVLGEIEMTALDEADQMADMGFLPEVRTLLADTPNDSQRLLFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL + +  +    +        + +D+  +LV   D+D   +  +       
Sbjct: 187 ATLDNDVKTLVREFLPEHELHSTQDGRASVTTMDHYVLLVDRGDKDAV-LAEIASREGGR 245

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+      T+ L E      AL G  +Q +R+  L+  + GR  V +ATDVAAR
Sbjct: 246 TIMFARTKLGAEGITERLREKGVAAEALHGGKAQNQRTRVLERFKTGRTPVLVATDVAAR 305

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV+H +   + ++ LHR+GRT RAG  G+   ++  N +R   RL   A V+
Sbjct: 306 GIHVDGIDLVVHVDPPQDHKDYLHRAGRTARAGEAGVVAAIVLPNQRRMFRRLTGMAGVN 365

Query: 367 VVWEP---------------APSVEAIR------ERDAQRILQDPLFLDSI---QGDEKK 402
               P               APS E +R      ERD++   ++  F D     +G  + 
Sbjct: 366 ATAVPVFPGSEELATITGAQAPSGEPVRDSYFRSERDSRGDRRERSFGDRGPRREGGFRG 425

Query: 403 MVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVS------GRDRFRDDSRAFKV- 455
             D    + D                   ++               R     D R  +  
Sbjct: 426 NRDDRGPRRDFGDRGPRRDGDGGGFRGNRDDRNDRGPRRDFGDRDNRSFGNRDDRGPRRD 485

Query: 456 -----------------------GGGSRDNFKGSSWFSLSVGSKQKAEARWLMPML---- 488
                                    G R +F   +    + G +     R          
Sbjct: 486 FGDRDNRAPRRDGDGGGFRGNRDDRGPRRDFGDRNQGERNFGDRDNRAPRRDGDGGGFRG 545

Query: 489 ---CRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
               R+    R+  G    + + +F                       +   G + D   
Sbjct: 546 NRDARNDRGPRRDFGD---RDNRSF---------------------GNRDDRGPRRDSGD 581

Query: 546 YKSSGFKSKNSQDGATKRFKRFKGASKN 573
            +S G    N   G   R   F+G   N
Sbjct: 582 RRSEGGFRGNDSRGGDSRSNGFRGDRDN 609


>gi|198425972|ref|XP_002127372.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Ciona intestinalis]
          Length = 790

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 111/399 (27%), Positives = 180/399 (45%), Gaps = 28/399 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++P  I E +   GY + T +Q   +      +D++  A+TGSGKT AF + L + +  L
Sbjct: 368 DLPPEIVEVIHRIGYKDPTPIQRQAIPIGFLNRDIIGVAETGSGKTAAFLIPLLAWITSL 427

Query: 64  AENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            + +R   A   P AL +APTRELA Q+  E      + G+     IGG+S   +   L+
Sbjct: 428 PKIERLEDADKGPYALILAPTRELAQQIEEETIKFGKELGIRTVAVIGGLSREDQGFKLR 487

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D +  + + +S    VVLDEAD M+D+GF  D++ ILD  P   + 
Sbjct: 488 MGCEIVIATPGRLIDVLENRYIVLSQCTYVVLDEADRMIDMGFEPDVQKILDHMPVTNQK 547

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQ-------------------------HS 217
               +     I       +    +  + +                               
Sbjct: 548 PDDESMEDKIIMKSNFLTKHKYRQTVMFTATMPVAVERLARSYLRRPAIVYIGSAGKPIE 607

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +     LV  +++   ++ +L        IVF + +       K L +  +    L G 
Sbjct: 608 RVKQIVYLVKENEKRKKLLGLLEKGITPPVIVFVNQKKGCDVLAKSLEKMGYNSTTLHGG 667

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q+ R  AL  +++G   + +ATDVA RGID+ D+ L+I+ +++ N E+  HR GRTGR
Sbjct: 668 KGQEHRELALSGLKNGSKDILVATDVAGRGIDIQDVTLIINFDMAKNIEDYTHRIGRTGR 727

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           AG+ G +V  + Q+       L +    S V    P ++
Sbjct: 728 AGKTGTAVTFLTQSDSAVFYDLRQALIESPVSSCPPELD 766


>gi|71897029|ref|NP_001025896.1| probable ATP-dependent RNA helicase DDX52 [Gallus gallus]
 gi|60098635|emb|CAH65148.1| hypothetical protein RCJMB04_4d17 [Gallus gallus]
          Length = 603

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 147/383 (38%), Gaps = 22/383 (5%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            F+ +         + E +   G+   T +Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 156 TFDQLQKEYKVHPKVIENIQAAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 215

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L + L    ++        AL I+PTRELA Q  REL  L   TG  + +        +
Sbjct: 216 PLLTHLKQPMNK-----GFRALIISPTRELASQTHRELVKLADGTGFRIHMIQKASEAAK 270

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML--------DLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 271 KFGPKSSRKFDILVTTPNRLIYLLKQDPPAIDLTSVEWLVVDESDKLFEDGKSGFRDQLA 330

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   RR    +            N     +    A  +   +       + + 
Sbjct: 331 SIFLACTSHVVRRAFFSATFAHDVEEWCKLNLDSIVLVSVGARNSAAETVEQELLFVGSE 390

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++   A   +VF  +          L      V  +  + +QQ+R N + 
Sbjct: 391 TGKLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVH 450

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I T + ARGID   + +VI+ +L ++    +HR GRTGRAG  G +V   
Sbjct: 451 SFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHTGKAVTFF 510

Query: 349 PQNMQ---RRAERLFREANVSVV 368
            ++ +   R    + + A   V 
Sbjct: 511 TEDDKPLLRSIANVIQRAGCPVP 533


>gi|300120104|emb|CBK19658.2| unnamed protein product [Blastocystis hominis]
          Length = 620

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 112/403 (27%), Positives = 190/403 (47%), Gaps = 37/403 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA-- 64
           +   I  A+   G+   T +Q   +  +L+  D++  A+TGSGKT AF + +   ++   
Sbjct: 186 VHPAILRAIETLGFKEPTPIQRQAIPIELKGMDMIGIAKTGSGKTCAFVVPMLQYVIQAP 245

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-----------GVVVAVCIGGV 112
            E    S    PLA+ +APTRELA Q+  + E L                + +A  +GG 
Sbjct: 246 IETRLQSKEQGPLAVVMAPTRELAKQIRDDAEKLAQFCVDERLAQSRSPRIRIACMVGGE 305

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S+  +   L NG  I++GTPGRL D +    + ++    +VLDEAD M+D GF + +  +
Sbjct: 306 SIVEQSSFLSNGCDILIGTPGRLLDCLERHFVVLNQTNYIVLDEADRMIDEGFEESVNAV 365

Query: 173 LDSS-----------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNI 209
           +D+                           R  +MFSAT+ P +  +AK Y +  V+V I
Sbjct: 366 MDAMGSTLKSEEEEDIEKAAEGVASLTNMYRTTIMFSATMPPKVEAIAKRYMRCPVQVTI 425

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
            + +        + + +       +++  +  +    AIVFC+ + +V   T+ L +   
Sbjct: 426 GTPSGTTKVDIKQIINMVRESDKPSMLLKIIRNNETPAIVFCNRKETVDTVTRSLHDSGH 485

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
           + VAL G + Q  R  AL+  R G   + +AT+VAARG+D+  ++LV++ ++  + E  +
Sbjct: 486 RTVALRGGIQQSRREEALEDFRRGVYDIMVATNVAARGLDIKGVKLVVNYDMPDSLELYI 545

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           HR GRTGRAG  G++V ++ +        L           P 
Sbjct: 546 HRIGRTGRAGATGLAVSLVTEKDSALFPDLVEYLKKEKQQIPI 588


>gi|238878350|gb|EEQ41988.1| ATP-dependent RNA helicase ROK1 [Candida albicans WO-1]
          Length = 640

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 170/366 (46%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +   L +  +V  T +Q   +   L  +D++  A TGSGKT+AF + L   +L++
Sbjct: 199 HINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK 258

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   S       L I+PT ELAVQ+ +ELE +      +    +      +   ++   +
Sbjct: 259 N--VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSS 316

Query: 126 --HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
              I+V TP RL D ++   +++S ++ +++DEAD++ D GF +   E +   +  K R 
Sbjct: 317 KYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIRK 376

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI  ++  +A +  KD +R+ I  +    + ID + V           +  +   
Sbjct: 377 SIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQQ 436

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +          L      V  +  E + ++R   ++  ++G   V I 
Sbjct: 437 GEFKPPIIIFLQSITRAKALFHELLYDRLNVDVVHAERTPKQREEVIKRFKNGDIWVLIT 496

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D   + LVI+ ++  + +  +HR GRTGR G+ G +V    +   +  + + 
Sbjct: 497 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPIL 556

Query: 361 REANVS 366
                S
Sbjct: 557 NVMKQS 562


>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 741

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 176/372 (47%), Gaps = 7/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++++  GYV  T +Q   +   L+ +D+  SA TGSGKT AF + +   LL   
Sbjct: 194 LSRPVLKSIAALGYVRPTDIQARAIPLALQGRDICGSAVTGSGKTAAFIIPIVERLLF-- 251

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R    +    L + PTREL VQ       +   T +   +C+GG+    +  +L+    
Sbjct: 252 -RPKNDATTRVLILVPTRELGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRLRPD 310

Query: 127 IVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I++ TPGRL DHI          +  +V+DEAD +LD GF  ++  I+  +P+ R+ ++F
Sbjct: 311 IIIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQTMLF 370

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL---VALSDRDNAIVNILRYH 242
           SAT++  +  L K      VR+ +    +  + +    +       + R   +  +    
Sbjct: 371 SATMTDNVDDLIKLSLNRPVRLFVDQNTKLTNRLVQEFIRVRGHKETSRPAILAALCSRT 430

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF  ++A+      +      +   L G L+Q +R  AL++ R+ +    +ATD
Sbjct: 431 YTSETIVFFRSKAAAHHMKIIFGFLGLKAAELHGNLTQLQRLEALELFREKKVGFLLATD 490

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+  ++ VI+ ++  +    +HR GRT R    G +V ++ +  +   +   + 
Sbjct: 491 LASRGLDISGVKTVINYDMPKSYSIYVHRVGRTARGDLAGRAVSLVGEADRALLKMAIKN 550

Query: 363 ANVSVVWEPAPS 374
              +V     P+
Sbjct: 551 TRDAVKNRIVPA 562


>gi|326474132|gb|EGD98141.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           tonsurans CBS 112818]
          Length = 809

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 374 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 433

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 434 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 493

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 494 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 553

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 554 EKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 613

Query: 216 --HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               +     V      +      +         IVF + + +     + +    F  V 
Sbjct: 614 VDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 673

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 674 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 733

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 734 RTGRAGKSGVAITFLGNEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 784


>gi|171683441|ref|XP_001906663.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941680|emb|CAP67334.1| unnamed protein product [Podospora anserina S mat+]
          Length = 816

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 171/374 (45%), Gaps = 8/374 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F ++P        L    +  LT +Q+A +   L+  D+L +A+TGSGKT+AF + +
Sbjct: 61  LTKFTDLPLCAATASGLRASHFEVLTDIQKAAIPLALKGHDILGAAKTGSGKTLAFLVPV 120

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+    +++      AL I+PTRELAVQ+   L  +         + IGG S+  E 
Sbjct: 121 LEKLV--QAQWTEYDGLGALIISPTRELAVQIFEVLRKIGRNHVFSAGLVIGGKSLKEEA 178

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G ++++L+ +VLDEAD ++D+GF+  ++ +++  PK
Sbjct: 179 DRLGRMNILVCTPGRMLQHLDQTAGFDVNNLQMLVLDEADRIMDMGFQSAVDALVEHLPK 238

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ ++FSAT S  ++          + V  +  +     +++    ++  L ++ + + 
Sbjct: 239 TRQTMLFSATQSKRVSDLARLSLKDPEYVSAHEEAPTATPTNLQQSYIVTPLPEKLDTLW 298

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE--RSNALQMMRDGR 294
             +R +     IVF S+   V    +        +  L     Q++  R    +     +
Sbjct: 299 GFIRTNLKSKMIVFFSSGKQVRFVYESFKRMQPGISLLHLHGRQKQVGRMEITRKFTSSK 358

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARG+D P ++ V+  +   + +  +HR GRT R   KG +V  +  + ++
Sbjct: 359 YACLFATDVVARGVDFPAVDWVVQVDCPEDADTYIHRVGRTARYESKGRAVLFLDPSEEK 418

Query: 355 RAERLFREANVSVV 368
                  +  + + 
Sbjct: 419 GFLSRLEQKKIPIT 432


>gi|332025035|gb|EGI65222.1| ATP-dependent RNA helicase DDX54 [Acromyrmex echinatior]
          Length = 776

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/390 (25%), Positives = 173/390 (44%), Gaps = 6/390 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + + +RGY   T +Q   +   L  +D++  A+TGSGKT  F + L   L    
Sbjct: 43  LSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKVRQ 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  + ++ L   TG+  AV +GG S+  +   +     
Sbjct: 103 AK----TGARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDNQFSAIHGNPD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         L + +++ +V DEAD + ++GF + I+ I++  P+ R+ L+FS
Sbjct: 159 IIVATPGRFLHICVEMDLQLKNIEYIVFDEADRLFEMGFGEQIQEIVNRLPESRQTLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +    K    D V + +  E++    +    +     ++      +        
Sbjct: 219 ATLPKILVDFTKAGLSDPVLLRLDVESKLPEGLTLSFITCRPEEKLAVLLSLLKRIIKPD 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T   V    ++L +       +   L    R       + G+ RV I TDVA
Sbjct: 279 SQIIIFAETMHHVEYIHQILDKADISNTFIYSNLDPSARKINAAKFQIGKVRVLIVTDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 339 ARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLDLHLFLG 398

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
             +   P    +   E    ++ Q  +  +
Sbjct: 399 RPLTIVPTTETDESMEYAVGKLPQAMVEEE 428


>gi|259502863|ref|ZP_05745765.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
 gi|259169230|gb|EEW53725.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
          Length = 463

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 109/417 (26%), Positives = 188/417 (45%), Gaps = 12/417 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + +A+    +   T+VQE ++   L  K V+  + TGSGKT AF L + 
Sbjct: 10  KTFNDFKLKPYLLKAVKAINFHEPTAVQEKVIPDILAGKSVVGQSATGSGKTHAFLLPIF 69

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S L              A+   P+RELA Q+     +L     +   +     G    H+
Sbjct: 70  SRLDPT------VQEVQAVITTPSRELAYQIYNAAKQLNQYADQPLTIHNYVGGTDKQHQ 123

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L++      V+DEAD  LD+GF + ++ I    
Sbjct: 124 IAQLERKQPQLVIGTPGRVLDLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRF 183

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +M++FSATI   +    K Y  + V   I +    + +++   +     DR+  I 
Sbjct: 184 PENLQMMVFSATIPEKLRPFLKKYMANPVIEEIPTATVINPNVENWLLSTKGHDRNQLIY 243

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+      T+ L E   +V  + G L  ++R   ++ +R+   +
Sbjct: 244 QLLTMGEPYLALVFANTKERAEELTRYLTEQGLKVALIHGGLEPRKRKRTMRQIRNLDYQ 303

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR    G ++ +         
Sbjct: 304 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNQLTGTAITLYEPAEDELI 363

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +L     +S V +   +   +   D  R  +     D +    K  V     K  P
Sbjct: 364 AKLEDR-GISFVPKELKNGRLVTTHDRNRRKKFRHRQDELDPSMKGYVKKTKRKVKP 419


>gi|296138846|ref|YP_003646089.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026980|gb|ADG77750.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola
           DSM 20162]
          Length = 536

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 182/383 (47%), Gaps = 20/383 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +   Q I +AL +RG     ++QE  L   L   D++  A+TG GKT  FG+ L  
Sbjct: 37  SFAELGVDQGIVDALGKRGIERTFAIQELTLPLALAGNDLIGQARTGMGKTYGFGVPLLD 96

Query: 61  TLLAENDRFSPASA-------PLALAIAPTRELAVQV---------GRELEWLYAKTGVV 104
            L+ +                P AL I PTREL VQV         G  ++    +  + 
Sbjct: 97  RLVTQARADVGEDGLRALDGTPRALIIVPTRELCVQVTDDLAQASDGVRVQTTKGERDLK 156

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
           +    GG     +   LQ G  +VVGTPGRL D      L +  ++ +VLDEADEMLDLG
Sbjct: 157 ITSIYGGRPYEAQIEALQKGVDVVVGTPGRLLDLANQGHLVLGKIQILVLDEADEMLDLG 216

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYR 222
           F  DIE IL   P  R+ ++FSAT+   I T       Q   VR     ++  H      
Sbjct: 217 FLPDIERILTMVPTDRQTMLFSATMPGPIITLARTFLKQPTHVRAEHHDDSAVHERTTQY 276

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
                  D+   +  +L+  G    ++F  T+ +  +    L E  F+V A+ G+L Q  
Sbjct: 277 VYRAHALDKTELVAKVLQAQGRGATMIFTRTKRTAQKVADELGERGFKVGAVHGDLGQVA 336

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  AL   RDG   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAG+ G
Sbjct: 337 REKALGKFRDGSIDVLVATDVAARGIDIDDVTHVINFQCPEDDKTYVHRIGRTGRAGKTG 396

Query: 343 MSVFVIPQNMQRRAERLFREANV 365
            +V ++  +   R E + +   +
Sbjct: 397 TAVTLVDWDELHRWELIDKALGL 419


>gi|254519619|ref|ZP_05131675.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226913368|gb|EEH98569.1| DEAD/DEAH box helicase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 370

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 108/372 (29%), Positives = 183/372 (49%), Gaps = 10/372 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++     + + L + G    T VQ  ++   + + DV+  ++TGSGKT+AF L +   
Sbjct: 3   FKDLKINTKLVDELKKNGITTPTKVQVNVIPEIINKNDVIGKSKTGSGKTLAFLLPILQI 62

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +       S + +   L ++PTRELA+Q+  E          ++A   GG  V  + + L
Sbjct: 63  ID------SNSKSTEVLILSPTRELAIQITEEANKFNINDIGILAA-YGGKDVGSQLKKL 115

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             G ++++ TPGRL DH+  K +N+S L  VV+DEAD+ML +GFR++IE I+  +PKK +
Sbjct: 116 NKGINLIIATPGRLLDHLERKSINLSKLNTVVIDEADQMLLMGFRNEIEKIMSYAPKKLQ 175

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-QHSDIDYRAVLVALSDRDNAIVNILR 240
            L FSATI   +  LA  Y  +   ++I      +  +I    V      + +A+V IL 
Sbjct: 176 TLCFSATIDSKVKKLAYRYMNNPTIIDITENEESEIPNIKQEVVKTTDRWKVDALVKILE 235

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 +I+FC T+         LA    +   +  ++ Q +R   ++  RD   +  IA
Sbjct: 236 EDNPFMSIIFCRTKRRADELEVKLAAKGIKAAKIHSDVPQNKREKIMKSFRDCEIQFLIA 295

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVA+RGID+  +  + + +   + E+ +HR GRT RAG  G +  +         E + 
Sbjct: 296 TDVASRGIDVTGVTHIYNYDAPESVESYIHRIGRTARAGDSGYTCLITDPKNYTILEEIE 355

Query: 361 REANVSVVWEPA 372
                ++     
Sbjct: 356 NYLQYTIPEREV 367


>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
 gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
           sp. MED121]
          Length = 459

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/374 (26%), Positives = 182/374 (48%), Gaps = 5/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I ++L   G+ + T +Q   +   +  +D+L S++TGSGKT+A+ +     +    
Sbjct: 22  FDARILQSLRHWGFDSATQIQAQAIPEAMAGRDLLASSKTGSGKTLAYLIPALHRV-YRV 80

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S   A   L + PTRELA QV  +L  L A + +  A+ +GG + + + +DLQ    
Sbjct: 81  KALSNKDA-RVLILVPTRELAKQVYSQLRLLVASSKLKTALILGGENFNDQIKDLQKDPQ 139

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD---SSPKKRRML 183
            +V TPGRL DH+  + + +  L+ ++LDEAD MLDLGF D ++ I D      ++    
Sbjct: 140 FIVATPGRLVDHLNQRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRLRQTLFF 199

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
             +   +       +   + +     A  +          +   L  ++  + ++L    
Sbjct: 200 SATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDIKQKFYLCDHLDHKEAILTHVLEQET 259

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  I+F +T+    R   +L E  F   AL+G+L+Q  R+  +     G  ++ ++TD+
Sbjct: 260 IKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFARGHFQILVSTDL 319

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+D+ ++  VI+ ++  + E  +HR+GRTGRAG +G +  ++        + L    
Sbjct: 320 ASRGLDIANVTHVINFDIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNFKALETFL 379

Query: 364 NVSVVWEPAPSVEA 377
           + S  ++    +EA
Sbjct: 380 SRSFSFDAIEGLEA 393


>gi|217073428|gb|ACJ85073.1| unknown [Medicago truncatula]
          Length = 369

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 106/355 (29%), Positives = 167/355 (47%), Gaps = 31/355 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + EN+       +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F   +  
Sbjct: 45  MGLLENL----LRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGILQ 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L              AL +APTRELA Q+ + +  L    GV                 
Sbjct: 101 QLDY------GLVQCQALVLAPTRELAQQMEKVMRALGDYLGVK---------------- 138

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                H+VVGTPGR+ D +R + L    +K  VLDEADEML  GF+D I  I    P K 
Sbjct: 139 ----VHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKI 194

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNIL 239
           ++ +FSAT+ P    + + +    VR+ +  +      I      +     +   + ++ 
Sbjct: 195 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY 254

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +++F +TR  V   T  +      V A  G++ Q  R   ++  R G +RV I
Sbjct: 255 ETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 314

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            TD+ ARGID+  + LVI+ +L + PEN LHR GR+GR GRKG+++  +     R
Sbjct: 315 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDAR 369


>gi|254386941|ref|ZP_05002224.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194345769|gb|EDX26735.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 469

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 119/367 (32%), Positives = 186/367 (50%), Gaps = 7/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 46  VETFADLDMPGQLLAALGAQGVTVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLAL 105

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+ 
Sbjct: 106 LAR--TAGQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARAVKLRLATVVGGMSIGRQA 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    
Sbjct: 163 GALRGGAEVVVATPGRLKDLIDRGDCRLNQVAVTVLDEADQMADMGFMPQVTALLDQVRP 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 223 EGQRMLFSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHR--ATT 280

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+  V + T+ L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 281 EIAARDGRVIMFLDTKHGVDQLTRDLLSSGVRAAALHGGKSQPQRTRTLAQFKSGHVSVL 340

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R
Sbjct: 341 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPAQRRDMTR 400

Query: 359 LFREANV 365
           L   A +
Sbjct: 401 LMAAAGI 407


>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
 gi|150274708|gb|EDN01772.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
           29799]
          Length = 636

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 181/369 (49%), Gaps = 4/369 (1%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  + Q I +AL+E GY   + +QE  + P L  +DVL  AQTG+GKT AF   + 
Sbjct: 1   MTFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPIL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +     P  +   L + PTRELA+Q+    E       +  AV  GGV    +  
Sbjct: 61  QRLGGDIPAGRPIRS---LILTPTRELALQIQESFEAYGKHLPLRSAVIFGGVGQQPQVD 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  I+V TPGRL D      +++S L+  VLDEAD MLD+GF  D+  +L   P  
Sbjct: 118 KLKKGVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRMLDMGFLHDVRRVLKLLPAV 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ L FSAT+ P +  L     K+ V+V +   +     ID    LV   ++   +  ++
Sbjct: 178 KQTLFFSATMPPEVMDLVNGLLKNPVKVAVDPVSSPVEIIDQSVYLVDKGNKTKLLAWLV 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                KNAIVF  T+   ++    L +      A+ G  SQ  R  AL   + G+ R  +
Sbjct: 238 EGLDVKNAIVFTRTKHGANKVAGDLVKAGITAAAIHGNKSQTARQQALADFKAGKVRCLV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+ +L  V +  L   PE  +HR GRTGRAGR G +V       Q   + +
Sbjct: 298 ATDIAARGLDIEELSHVFNYNLPEVPETYVHRIGRTGRAGRGGTAVSFCDFGEQEYLKDI 357

Query: 360 FREANVSVV 368
            +     V 
Sbjct: 358 EKLIGRKVP 366


>gi|193222330|emb|CAL61847.2| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +TS+Q   L   L+ +D++  A+TGSGKT AFG+ +   L    
Sbjct: 11  LSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKLNPT- 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                  A   L I PTRELA QV  EL  L      + +    GG  +  +   L++GA
Sbjct: 70  -----WFAIQGLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEHGA 124

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    +N+S ++ +VLDEAD M+D+GF ++I  I+ + P++R+ L+F
Sbjct: 125 HIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLF 184

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + +D V V         S I+ R   V   DR+ A+  +L+++   
Sbjct: 185 SATYPDDIRKASAEFLRDPVEV-KVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPV 243

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAA
Sbjct: 244 STLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAA 303

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +      
Sbjct: 304 RGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQK 363

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              W    S E     D    L  P+    I G +K  + 
Sbjct: 364 PAQWFDLKSAEPAEGGD----LHAPMVTLCIMGGKKDKLR 399



 Score = 53.8 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 427 GLCAPEEITPVSLVSGRDRFR----DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            LCAP E   V L+    +      D   A    GG            +  G K K    
Sbjct: 344 SLCAPNEKKWVKLIEEYQQKPAQWFDLKSAEPAEGGDLHA--PMVTLCIMGGKKDKLRPG 401

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
            L+  L    G+ +  +G I V   +T+V +     D 
Sbjct: 402 DLLGALTGDVGLTKDQVGKINVFEFMTYVALDRRAADK 439


>gi|134094897|ref|YP_001099972.1| ATP-dependent RNA helicase DbpA [Herminiimonas arsenicoxydans]
          Length = 506

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 202/400 (50%), Gaps = 12/400 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L   GY  +TS+Q   L   L+ +D++  A+TGSGKT AFG+ +   L    
Sbjct: 53  LSPPMLSNLDALGYREMTSIQAQSLPVILQLRDLIAQAKTGSGKTAAFGIGMLQKLNPT- 111

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGA 125
                  A   L I PTRELA QV  EL  L      + +    GG  +  +   L++GA
Sbjct: 112 -----WFAIQGLVICPTRELADQVSNELRRLARFADNIKILTLCGGAPMRPQIASLEHGA 166

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGRL DHI    +N+S ++ +VLDEAD M+D+GF ++I  I+ + P++R+ L+F
Sbjct: 167 HIVVGTPGRLRDHISRNTINLSTVQTLVLDEADRMVDMGFYEEIAGIVSACPERRQTLLF 226

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT    I   +  + +D V V         S I+ R   V   DR+ A+  +L+++   
Sbjct: 227 SATYPDDIRKASAEFLRDPVEV-KVEAQHDDSQIEQRFYEVGYDDRNAAVATLLKHYRPV 285

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
           + + FC+T+         L    F  +AL GEL Q+ER   L +  +    V +ATDVAA
Sbjct: 286 STLAFCNTKIHCRELAAELRAQGFSALALYGELEQRERDEILVLFANQSCSVLVATDVAA 345

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RG+D+  L  VI+ ++S + E  +HR GRTGR   KG+++ +   N ++  + +      
Sbjct: 346 RGLDIQSLGAVINVDVSKDTEVHIHRIGRTGRGQDKGLALSLCAPNEKKWVKLIEEYQQK 405

Query: 366 SVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
              W    S E     D    L  P+    I G +K  + 
Sbjct: 406 PAQWFDLKSAEPAEGGD----LHAPMVTLCIMGGKKDKLR 441



 Score = 53.8 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 427 GLCAPEEITPVSLVSGRDRFR----DDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEAR 482
            LCAP E   V L+    +      D   A    GG            +  G K K    
Sbjct: 386 SLCAPNEKKWVKLIEEYQQKPAQWFDLKSAEPAEGGDLHA--PMVTLCIMGGKKDKLRPG 443

Query: 483 WLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDL 520
            L+  L    G+ +  +G I V   +T+V +     D 
Sbjct: 444 DLLGALTGDVGLTKDQVGKINVFEFMTYVALDRRAADK 481


>gi|312194633|ref|YP_004014694.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
 gi|311225969|gb|ADP78824.1| DEAD/DEAH box helicase domain protein [Frankia sp. EuI1c]
          Length = 543

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 116/348 (33%), Positives = 177/348 (50%), Gaps = 4/348 (1%)

Query: 12  GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSP 71
            + L+  G V+  ++QE  L   L   D++  A+TG+GKT+ FG+ +   +L  ++    
Sbjct: 1   MDTLAAAGIVHPFAIQELTLPLALAGTDIIGQARTGTGKTLGFGIPVIQKVLGPDEGADG 60

Query: 72  ASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
              P AL + PTREL VQV  +L+       + V    GG +   +   L++G  +VVGT
Sbjct: 61  R--PQALIVVPTRELCVQVTNDLDRAGKGRRIRVLSVYGGRAYEPQTSALKSGVDVVVGT 118

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D  R + LN+ ++  +VLDEADEMLDLGF  D+E I+   P  R+ ++FSAT+  
Sbjct: 119 PGRLLDLARQRTLNLGNVATLVLDEADEMLDLGFLPDVERIVALLPAGRQTMLFSATMPG 178

Query: 192 AITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIV 249
            +         +   V      E R               D+   +  +L+  G   +IV
Sbjct: 179 PVIALARRFMIRPVHVTAEQPDEGRTVPTTSQHVFRAHAMDKMEVLSRVLQAEGRSLSIV 238

Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
           F  TR +  +  + LA   F    + G+L Q +R  AL+  R G+  V +ATDVAARGID
Sbjct: 239 FVRTRRTADKVAEDLARRGFAAAPVHGDLGQGQREQALRAFRAGKVDVLVATDVAARGID 298

Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
           +  +  VI+ +   +    LHR GRTGRAG  G++V  +  +   R +
Sbjct: 299 VGGVTHVINYQCPEDESVYLHRIGRTGRAGGSGVAVTFVDWDDLARWQ 346


>gi|115958772|ref|XP_001180014.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
           [Strongylocentrotus purpuratus]
          Length = 785

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 116/381 (30%), Positives = 187/381 (49%), Gaps = 28/381 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P+ I + ++E GY + + +Q   +   L+ +DV+  A+TGSGKT AF + L    STL 
Sbjct: 363 LPKHITDIIAEVGYKDPSPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVWISTLP 422

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P A+ +APTRELA Q+  E        G+     IGG+S   +   L+ 
Sbjct: 423 KIERDEDKDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVTIIGGISREDQGFKLRL 482

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L +     VVLDEAD M+D+GF  D++ IL+  P      
Sbjct: 483 GCEIVIATPGRLIDVLENRYLVLCQCTYVVLDEADRMIDMGFEPDVQKILEYLPVTNQKP 542

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+  A+  +A++Y +    V I S  +    
Sbjct: 543 DSEEAEDSAKLLANFASKKKYRQTVMFTATMPTAVERVARSYLRRPAVVYIGSIGKPVES 602

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +     + +  ++   ++ +L        ++F + +  V    K L +  F    L G  
Sbjct: 603 VQQLVYMTSNQEKRQKLIQLLEKGIDPPVLIFVNQKKRVDALAKRLEKMGFNATTLHGGK 662

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           SQ++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++ N E+  HR GRTGRA
Sbjct: 663 SQEQREYALASLKAGLKDILVATDVAGRGIDIKDVSVVINFDMAKNIEDYTHRIGRTGRA 722

Query: 339 GRKGMSVFVIPQNMQRRAERL 359
           G+ G +V  +  +       L
Sbjct: 723 GKTGTAVSFLTPDDSAIFYDL 743


>gi|317128337|ref|YP_004094619.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315473285|gb|ADU29888.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 442

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 107/391 (27%), Positives = 192/391 (49%), Gaps = 12/391 (3%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           FE +   + E L  +     T +QE ++       DV+  +QTG+GKT AF L +   + 
Sbjct: 11  FE-LKPFLIEGLIAQNISLPTEIQERLIPAIKNGSDVIGQSQTGTGKTYAFLLPILDQIN 69

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDL 121
            +       +   A+  APTRELA Q+  EL  L +     +   + +GG    R    L
Sbjct: 70  EDE------NETQAVITAPTRELASQLYYELNKLTSHAEKTIESQLVVGGTDRLRMMEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +N  H++VGTPGR+ D I  + LN+  +  +V+DEAD+MLD+GF ++++          +
Sbjct: 124 KNKPHVIVGTPGRVADMIDKQALNVREVNVLVVDEADQMLDMGFIEEVDRAASRMGDDLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    + Y K+   V +  ++     I +  +     DR   IV++ + 
Sbjct: 184 MLVFSATIPEKLKPFLRKYMKNPKHVEVQPKDVSPKKIKHWLIPDRDRDRKEIIVDVSKK 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A++F + + +     + L      V  + G +S ++R   ++ ++D   +  +AT
Sbjct: 244 LNPYLAVIFTNKKETADEVYEELLNQGLNVDIMHGGISPRQRKKVMKKLQDAEIQFLVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ARGID+  +  +I+ E+ +  E  +HR GRT RAG  G++V +  +N Q+   +L +
Sbjct: 304 DLVARGIDVEGISHIINFEIPTELEYYIHRVGRTARAGWDGIAVTIYGRNEQQSISKLEK 363

Query: 362 EANVSVVWEPAPSVE--AIRERDAQRILQDP 390
           +  +   +      E   I +R   ++ + P
Sbjct: 364 Q-GIRFQYRELKKGEWVDIDKRSRPQMAESP 393


>gi|256088376|ref|XP_002580315.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238665868|emb|CAZ36554.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 793

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 117/419 (27%), Positives = 201/419 (47%), Gaps = 40/419 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STL 62
           N+   + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L      L
Sbjct: 369 NVADELKDVIKKVGYPEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLNWIQRL 428

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       P A+ +APTRELA Q+  E        G+     IGG+S   +   L+
Sbjct: 429 PKLERLEDTEQGPYAIIMAPTRELAQQIEEETVKFGRPLGIKTVSLIGGLSREDQALKLR 488

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------ 176
            GA IV+GTPGRL D +  + + ++    +VLDEAD+M+D+GF  ++  IL         
Sbjct: 489 MGAEIVIGTPGRLNDVLENRYMVLNQCTYIVLDEADKMIDMGFEPEVNNILTYLPVTNEK 548

Query: 177 -------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
                               K R+ +MF+AT+ PA+  LA++Y +    V I S  +   
Sbjct: 549 PDNEDAEDDSKLLSNFATKHKYRQTVMFTATMPPAVERLARSYLRRPAMVYIGSAGKPTE 608

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            ++    +V+  ++   ++ IL        I+F + +       K L +  +  V L G 
Sbjct: 609 RVEQIVYMVSEQEKRRKLLEILAAGLDPPVIIFVNQKKGADVLAKGLEKLGYSAVVLHGG 668

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q++R  AL  ++ G+  + +ATDVA RGID+ D+ +VI+ ++S   +  +HR GRTGR
Sbjct: 669 KGQEQREYALASLKSGQKEILVATDVAGRGIDIKDVSMVINYDMSKTIDEYVHRIGRTGR 728

Query: 338 AGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPA---------PSVEAIRERDAQ 384
           AG+ G+++ ++ +         ++L  ++ VS               P + A ++R A+
Sbjct: 729 AGKSGIAISLLTKEDAPVFYDLKQLLIQSPVSTCPHELANHPDAQTKPGILAAKKRRAE 787


>gi|303289024|ref|XP_003063800.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454868|gb|EEH52173.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 425

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 12/376 (3%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F  +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F LA+  
Sbjct: 46  FKDF-LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLAVLQ 104

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG--GVSVHRER 118
            L              AL +  TRELA Q+  E E        V    +        ++ 
Sbjct: 105 QLEPVPGEIG------ALILCHTRELAYQIMHEFERFSVYLPNVNVSVVFGGVNIKQQKE 158

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSP 177
                   +VV TPGRL    +   L++      +LDE D+ML+    R D++ I   +P
Sbjct: 159 ELEAKPPSVVVATPGRLKALAKDGSLSLKQCGHFILDECDKMLEQLDMRSDVQEIFKMTP 218

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIV 236
             ++++MFSAT+S  I  + K +  D + + +  E +     +    + +   +++  + 
Sbjct: 219 HDKQVMMFSATLSKEIRPVCKKFMNDPMEIYVDDETKLTLHGLVQHYIKLQEGEKNRKLN 278

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L        ++F  +    +   K+L E  F  +A+   +SQ+ER    +  ++G  R
Sbjct: 279 DLLDALMFNQVVIFVKSVQRCTYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGHKR 338

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRR 355
           + +ATD+ ARGID+  + +VI+ ++    +  LHR GR GR G KG+++  I        
Sbjct: 339 ILVATDLVARGIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFIASDEDSGV 398

Query: 356 AERLFREANVSVVWEP 371
             ++     V +   P
Sbjct: 399 LNQVHERFEVEIKELP 414


>gi|319761928|ref|YP_004125865.1| dead/deah box helicase domain protein [Alicycliphilus denitrificans
           BC]
 gi|317116489|gb|ADU98977.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           BC]
          Length = 584

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/418 (28%), Positives = 189/418 (45%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T+VQE  +   +       +  D++VS+QTGSGKT AF L + 
Sbjct: 38  LAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAFLLPVL 97

Query: 60  STLLAE------------------------------------NDRFSPASAPLALAIAPT 83
            TL+ +                                    + R   A+AP AL + PT
Sbjct: 98  HTLIQQQADADAAARAEFERAAAEAAARGEAAPKRPKRKNPTHPRNFKAAAPGALVLCPT 157

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A++VV TPGRL D  R   
Sbjct: 158 RELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQNANLVVATPGRLLDLQRSMQ 217

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     +
Sbjct: 218 IKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAMRVMHE 277

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                        + +  +             +   + + LR      AIVF ST+    
Sbjct: 278 GGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFASTQVECD 337

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 338 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSITHVFN 397

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR G++V       +R+   +   +      E    +E
Sbjct: 398 FGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKAEVVAGLE 455


>gi|239814491|ref|YP_002943401.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
 gi|239801068|gb|ACS18135.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
          Length = 661

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 124/417 (29%), Positives = 194/417 (46%), Gaps = 47/417 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK----------DVLVSAQTGSGKTVAFGL 56
           +   +  A+++ G+   T+VQ+ ++   +  +          D++VS+QTGSGKT AF L
Sbjct: 83  LAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLL 142

Query: 57  ALASTLLAE------------------------------------NDRFSPASAPLALAI 80
            +  TLL                                      N R   A+ P AL +
Sbjct: 143 PVLHTLLKRQAEAEAQAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATPGALIL 202

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R
Sbjct: 203 CPTRELAQQVAHDAIELVRHCRGLRVANVVGGMPYQLQIAKLQNADLVVATPGRLLDLQR 262

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
              + +  +K +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA+  
Sbjct: 263 SMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 322

Query: 201 QKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
            ++  R+ I S   +H++I            +   + + LR      AIVF ST+     
Sbjct: 323 MREPQRITIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 382

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 383 LANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 442

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            L    E+  HR GRTGRAGR G+++       +R+   + + +      E    +E
Sbjct: 443 GLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAEVVAGLE 499


>gi|71665086|ref|XP_819517.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
           Brener]
 gi|70884821|gb|EAN97666.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
          Length = 608

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 179/418 (42%), Gaps = 10/418 (2%)

Query: 6   NIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   I  AL  +  +  LT +Q   +   L  +D+L  A+TGSGKT+AF + +   +  
Sbjct: 119 NLNPHIVTALENDFKFGELTGIQGRCVPAALSGRDLLAEAKTGSGKTLAFLIPIVEII-- 176

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL--- 121
               F   +   A+ I PTREL +Q+   L  L       +          R +      
Sbjct: 177 SRAGFRAKNGTAAVIIGPTRELCLQIEGVLLKLLKHFNGSITFLCCIGGQSRNQEAFKLV 236

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L            +L  + +DEAD +LD GF +D+  I+   PKKR+
Sbjct: 237 NGMMIVIASPGRLLDHLKLTTDWLTKNLLVLAVDEADRVLDNGFEEDMREIVSLLPKKRQ 296

Query: 182 MLMFSATISPAITTLAKNYQKDAV---RVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             +FSAT +  +  LA+           +    E      ++   V+     R   + + 
Sbjct: 297 TFLFSATQTTRVEQLARISFYRPPLLISMKRREEKATVDTLEQGYVMCPSEQRLLVLYHF 356

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           ++ +  K  IVF S+R +VS   ++        VA  G+  Q +RS       +  + V 
Sbjct: 357 VKRNLKKKMIVFFSSRNAVSFHCELFNYIDVPCVAFHGKQKQHQRSATYMQFCNAPSGVL 416

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
             TDVAARG+D+P ++ ++  +   +P   +HR GRT RAGR G ++  +    +   + 
Sbjct: 417 FTTDVAARGLDIPHVDWIVQFDPPDDPVKYVHRVGRTARAGRCGNALMFLLPQEKLFLKY 476

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L+ +A+V+V       +  +++   +++ Q       ++   ++  +  L  +   ++
Sbjct: 477 LYDDAHVTVSEYTF-DLSKVKQGVCEQLEQLVSTNYYLRTSARQAYEGYLLSYSSSQL 533


>gi|315444871|ref|YP_004077750.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
 gi|315263174|gb|ADT99915.1| DNA/RNA helicase, superfamily II [Mycobacterium sp. Spyr1]
          Length = 468

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 187/367 (50%), Gaps = 6/367 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +AL+ERG      +Q A L   L  +DVL   +TGSGKT+AF + L +
Sbjct: 5   TFADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVA 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + S  S    L +APTRELA Q+   LE +    G+ V    GGVS  R+   
Sbjct: 65  ALTGIRRQASRPSG---LVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL D ++ K +++ ++   VLDEAD M DLGF   +  IL ++P+  
Sbjct: 122 LRGGIDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGG 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  + V  ++       + + +         ++   +    
Sbjct: 182 QRLLFSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHV-FHVGGVQEKKDLVHQL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+    +  K L E     V L G LSQ  R   L     G ARV +A
Sbjct: 241 ASGTGRRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L 
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLL 360

Query: 361 REANVSV 367
           R+A ++V
Sbjct: 361 RKAGITV 367


>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
 gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
          Length = 432

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 183/371 (49%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP++I   LS+  Y   T +Q   +   L   D++  A TGSGKT  F L +  TL    
Sbjct: 16  IPELIAR-LSDLEYSQPTPIQAKAIPSILAGSDLIAGANTGSGKTATFALPMLQTLFLAQ 74

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDL 121
                 S  +    L + PTRELAVQV   ++   A     +      GGVSV+ + + L
Sbjct: 75  GAKKAASKGNFVTGLILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +T L +    + V + + S++        R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDESTL--VQRVFTVNKGEKTTVLAHLIKQ 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  + A++F + +         L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQALIFVNAKKDCEHLASKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I  +       + +
Sbjct: 313 DIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYDDFHHFRIIEK 372

Query: 362 EANVSVVWEPA 372
           +  + +  E  
Sbjct: 373 KNKLRLEREEV 383


>gi|145224540|ref|YP_001135218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           gilvum PYR-GCK]
 gi|145217026|gb|ABP46430.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum
           PYR-GCK]
          Length = 468

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 125/367 (34%), Positives = 187/367 (50%), Gaps = 6/367 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + +AL+ERG      +Q A L   L  +DVL   +TGSGKT+AF + L +
Sbjct: 5   TFADLGVPAPLVKALAERGIAEPFPIQAATLPDSLAGRDVLGRGKTGSGKTLAFSIPLVA 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     + S  S    L +APTRELA Q+   LE +    G+ V    GGVS  R+   
Sbjct: 65  ALTGIRRQASRPSG---LVLAPTRELATQITAALEPMATAAGLRVTTIYGGVSQGRQVSA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL D ++ K +++ ++   VLDEAD M DLGF   +  IL ++P+  
Sbjct: 122 LRGGIDIVVACPGRLEDLMQQKVISLDNVTVTVLDEADHMADLGFLPGVTRILAATPRGG 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  + V  ++       + + +         ++   +    
Sbjct: 182 QRLLFSATLDNGVDKLVQRFLDNPVLHSVNEAAEAPAQMTHHV-FHVGGVQEKKDLVHQL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+    +  K L E     V L G LSQ  R   L     G ARV +A
Sbjct: 241 ASGTGRRILFMRTKHQARKLAKQLTESGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L 
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLL 360

Query: 361 REANVSV 367
           R+A ++V
Sbjct: 361 RKAGITV 367


>gi|91218309|ref|ZP_01255254.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
 gi|91183518|gb|EAS69916.1| superfamily II DNA and RNA helicases [Psychroflexus torquis ATCC
           700755]
          Length = 443

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/425 (28%), Positives = 201/425 (47%), Gaps = 11/425 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           I + +  +L +      T VQE  +   L + +D++V ++TGSGKT AFGL L   +  E
Sbjct: 10  INEHLQRSLVDLQISVPTEVQEKTIPVVLNQNEDLVVLSKTGSGKTAAFGLPLLQLIDTE 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNG 124
           N      ++   L +APTREL  Q+   L    + +  +  A   GG  +  +  +L + 
Sbjct: 70  N------TSIQTLILAPTRELGQQIYNNLISFASWSDQIHIASLCGGTPIKPQIENLNST 123

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            H+VV TPGRL D I+ + +++ HLK VVLDEADEML     +    I      +R +L 
Sbjct: 124 THLVVATPGRLLDLIKREAIDLKHLKYVVLDEADEMLSALKFEVDTIIKAIPKTRRTLLF 183

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            +         +     KD V + + +    H  ID+  V+V   ++ + +++ L   G 
Sbjct: 184 TATMSGTVKQLVQNYMSKDLVTIEVDTTTLGHQGIDHHYVVVEPIEKLDVLLHFLNSKGG 243

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  I+FC T+A+V++  K LA + F   A+ G L+Q  R   +   R+G   + +ATD+A
Sbjct: 244 ERGIIFCKTKAAVNKLAKKLAINKFSSGAIHGSLTQGIRDRIMGQFREGHIDILVATDLA 303

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+ ++  V++  L    E  +HRSGRT RAG KG+S+ ++             E  
Sbjct: 304 ARGIDVKEVSYVVNYHLPDTYEAYVHRSGRTARAGAKGLSLTILQHEEIAEITDFENELG 363

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDPEKIAAGFL 421
           +          ++I E +A    +          +  + K  +  +      E++    L
Sbjct: 364 IVFHKFKKADAQSIEENNALLWAKKIFKTKPNREVSEEFKTKIKTVFHHLTKEELVDKVL 423

Query: 422 RIHRA 426
             H A
Sbjct: 424 AHHLA 428


>gi|33416833|gb|AAH55481.1| Ddx10 protein [Mus musculus]
          Length = 623

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 10  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 69

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 70  LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 127

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 128 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 187

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 188 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 247

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 248 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 307

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 308 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 367

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 368 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 427

Query: 413 PE 414
            E
Sbjct: 428 KE 429


>gi|297797363|ref|XP_002866566.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312401|gb|EFH42825.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 721

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 114/395 (28%), Positives = 175/395 (44%), Gaps = 17/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++   
Sbjct: 260 LSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSP 319

Query: 67  DRFSPASAP--LALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQ 122
                   P  LAL I PTRELA Q   E   L      +    V  G      ++R   
Sbjct: 320 PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 379

Query: 123 NGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ + PK+
Sbjct: 380 NPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKE 439

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---- 235
           R+  +FSAT+   +  +     +                      +  ++  D       
Sbjct: 440 RQTFLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLY 499

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                 +  +     IVFC+T         +L E    V  +     Q  R+      R 
Sbjct: 500 TLLREHIMDNVDYKVIVFCTTAMVTKLVADLLGEINLNVREIHSRKPQSYRTRVSNEFRK 559

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + +DV+ARG+D PD+ LV+   L  + E  +HR GRTGR G++G  + ++    
Sbjct: 560 SKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGEGILLLAPWE 619

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +     L    ++ +   P PS++    +  Q+ L
Sbjct: 620 ECFLSSL---KDLPITKSPLPSIDPETVKKVQKAL 651


>gi|269102593|ref|ZP_06155290.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162491|gb|EEZ40987.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 402

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 113/363 (31%), Positives = 176/363 (48%), Gaps = 13/363 (3%)

Query: 27  QEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL----------AENDRFSPASAP- 75
           QE  +   L   DV+  AQTG+GKT AF L +   L+           E ++      P 
Sbjct: 2   QEQAIPLALTGVDVMAGAQTGTGKTAAFALPMLHRLMSYPAASELHADEAEQTEQRKQPA 61

Query: 76  --LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTRELA QV   +      T + V V  GG S++ + + LQ GA IV+ TPG
Sbjct: 62  LIRGLVLTPTRELAQQVYDNVMTYCKHTDLKVVVAYGGTSMNVQVKALQQGADIVIATPG 121

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL DH+    L++ +L+  VLDEAD MLD+GF  DI+ I+     +R+ L FSAT S  +
Sbjct: 122 RLIDHMHVGTLSLKYLECFVLDEADRMLDMGFIIDIKRIMKRMAAERQTLFFSATFSKQV 181

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             LA +   +   V +   N     +      V    +   +  ++     +  +VF  T
Sbjct: 182 KKLAFDIMTEPKMVEVTPANTAAETVQQMVYPVDKHRKRELLSYLIGSRNWQQVLVFTKT 241

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +       K L     +  +++G+ SQ  R  AL   + G+ R  +ATDVAARGID+  L
Sbjct: 242 KQGSDELVKELGLDGIKAASINGDKSQGARQRALDDFKSGKVRALVATDVAARGIDIEQL 301

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           E V++ ++   PE+ +HR GRTGRAG  G ++ ++  + +   + +    +  +  +   
Sbjct: 302 EYVVNFDMPFKPEDYVHRIGRTGRAGSAGHAITLMSLDEEWILKGIEELLDTRLPQQWLE 361

Query: 374 SVE 376
             E
Sbjct: 362 GFE 364


>gi|26342749|dbj|BAC35031.1| unnamed protein product [Mus musculus]
          Length = 681

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISTLALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 425

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 426 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 485

Query: 413 PE 414
            E
Sbjct: 486 KE 487


>gi|27371129|gb|AAH23303.1| Ddx10 protein [Mus musculus]
          Length = 681

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 425

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 426 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 485

Query: 413 PE 414
            E
Sbjct: 486 KE 487


>gi|300362252|ref|ZP_07058428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
 gi|300353243|gb|EFJ69115.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           gasseri JV-V03]
          Length = 464

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/384 (27%), Positives = 186/384 (48%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E I   +   L +  +   T VQ A++   L  K+V+V A TGSGKT A+ L L + +  
Sbjct: 14  EKIRPELRTGLEKINFSKPTKVQAAVIPALLNNKNVVVQAATGSGKTHAYLLPLLNMIDE 73

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDL 121
                       A+  AP+RELA Q+ +    L   +G+ +++     G     +  +  
Sbjct: 74  NAP------VTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQIEKAE 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+    KK  
Sbjct: 128 NRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLGQMDEIISKLDKKVV 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +    + Y      + I +       I    + V   D+   +  +L  
Sbjct: 188 LGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEILYKLLTM 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +  +A+
Sbjct: 248 GQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVAS 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LV++ E+  + E ++HR GRTGR G KG ++ +I      + E L +
Sbjct: 308 DLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLKGHAITLIYDEEMPQIEDLEK 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 368 -LGIHFDFKEIKNGELVERTHYHR 390


>gi|328790612|ref|XP_003251437.1| PREDICTED: eukaryotic initiation factor 4A-like [Apis mellifera]
          Length = 548

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F +++   +   
Sbjct: 181 NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSISILQQID-- 238

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 239 ----TTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 294

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 295 HIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVILL 354

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I      +     +   + ++      
Sbjct: 355 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDLYDTLSI 414

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 415 TQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 474

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++ ++  + +R  + + +  N
Sbjct: 475 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKDIEQFYN 534

Query: 365 VSVVWEPAPSVEAI 378
            S+   P    + I
Sbjct: 535 TSIEEMPMNVADLI 548


>gi|326778321|ref|ZP_08237586.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658654|gb|EGE43500.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 753

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 208/443 (46%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 84  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAAL---A 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 141 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 200

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 201 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 260

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y    V   + S     + + +  ++V    +D A V          
Sbjct: 261 ATMENEIGTLVKRYLSTPVTHEVDSAQGNVTTMSHHVLVV--KPKDKAPVTAAIAARKGR 318

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 319 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 378

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V 
Sbjct: 379 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGVD 438

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                           A+  +     L  +Q D         A+ +   +     R+ R 
Sbjct: 439 ASRHIVQGAGVFEPEVAE--ITGARSLTEVQADSANNAAKQ-AEREAADLTKQLERVQRR 495

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
            +   EE   +   + R+R  D 
Sbjct: 496 AVELREEADRLVARAARERGDDP 518


>gi|169844510|ref|XP_001828976.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
 gi|116510088|gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
          Length = 432

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 166/372 (44%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    L   N
Sbjct: 56  LKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVN 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          V                  RD  
Sbjct: 116 GEVS------VLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKT 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVV TPGRL    R K L+  ++K  VLDE D+ML+    R D++ I   +P  ++
Sbjct: 170 KCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHHKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
           ++MFSAT++  I    K +  + + + +  E +     +    V +  + ++  +  +L 
Sbjct: 230 VMMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAGKNRKLNELLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  + A      K+L    F  +A+   L Q+ER       +    R+ +A
Sbjct: 290 NLEFNQVVIFVKSVARAIELDKLLVSCNFPSIAIHSGLQQEERIKRYTAFKAFEKRILVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TD+  RGID+  + +V++ +   + ++ LHR GR GR G KG+++  +  +  Q+    +
Sbjct: 350 TDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDTDQQTMASI 409

Query: 360 FREANVSVVWEP 371
                V+V   P
Sbjct: 410 QSRFEVAVPELP 421


>gi|302503157|ref|XP_003013539.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
 gi|291177103|gb|EFE32899.1| hypothetical protein ARB_00357 [Arthroderma benhamiae CBS 112371]
          Length = 812

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 374 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 433

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 434 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 493

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 494 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 553

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 554 EKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 613

Query: 216 --HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               +     V      +      +         IVF + + +     + +    F  V 
Sbjct: 614 VDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 673

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 674 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 733

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 734 RTGRAGKSGVAITFLGSEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 784


>gi|226312873|ref|YP_002772767.1| ATP-dependent RNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226095821|dbj|BAH44263.1| putative ATP-dependent RNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 414

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 112/371 (30%), Positives = 185/371 (49%), Gaps = 9/371 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F ++     +   L ER     T VQ   +   +  +D LV + TG+GKT A+ L + 
Sbjct: 3   TTFADLQISAPLLTILRERKMETPTPVQSEAIPLIMAGRDALVESPTGTGKTFAYLLPIL 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S +  E           A+ +APT EL VQ+ RE E L       V   IGGV V R+  
Sbjct: 63  SKVNMEQKDV------QAIVLAPTHELVVQIAREAESLLPGKDTAVMSIIGGVDVKRQIE 116

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    ++V TPGRL + I  + L +  +K VV+DEAD MLD GF   ++ ++  + + 
Sbjct: 117 KLKKKPVLIVATPGRLLELIEQRKLKVHEVKTVVVDEADRMLDAGFGKPVQEVMKKTLRD 176

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSATI+  +   A+ + KDA  +  A+         +  ++     + + +  +L
Sbjct: 177 TQRLLFSATIAEEVVHTAEIFTKDAAVIRAAAPEGAAGV-AHMYLVTDPRKKVDTLRRLL 235

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           R    +++IVF +    V      L  H      L  + +++ER+  LQ  RDG   V I
Sbjct: 236 RLVNVRSSIVFVNQIEKVDEIVSKLNYHNLPCRLLHRDATKEERARTLQQFRDGVFPVLI 295

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDV+ARGID+P +E ++H + +S+ +  +HRSGRTGR GR G+   ++    Q   ++ 
Sbjct: 296 TTDVSARGIDIPGVECIVHYDPASDADTYIHRSGRTGRMGRAGLVFSIVTPQEQFIIQKF 355

Query: 360 FREANVSVVWE 370
            ++  + +  +
Sbjct: 356 SKQTGLPIAEK 366


>gi|224002607|ref|XP_002290975.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972751|gb|EED91082.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 681

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 122/503 (24%), Positives = 209/503 (41%), Gaps = 29/503 (5%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F    + + I   L  +  VN   VQ   L   +  +DV+  A+TGSGKT+AF L +
Sbjct: 59  VSTFREAGLSERINAVLESKNMVNPFPVQAQCLPCIMAGRDVIGIAKTGSGKTLAFVLPM 118

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +L +       + P+ L +AP RELA Q+    +      G+      GG  V  + 
Sbjct: 119 LRHILDQPPLAPGETGPIGLILAPARELAYQIHVVCKGFTKHLGLKSTAVYGGAGVAEQI 178

Query: 119 RDLQNGAHIVVGTP---GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            DL+ G HI+  TP     +     GK +++  +  V LDEAD   D+GF   I  IL +
Sbjct: 179 GDLKRGTHILCATPGRLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSA 238

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               R+ ++FSAT   A+  LAK   +  + + +   +     +D  A +V   D+   +
Sbjct: 239 VRPDRQTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRL 298

Query: 236 VNI--LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           + I        K  IVF   +       + L    +  +++ G + Q++R + +   +  
Sbjct: 299 LQILGDHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRV 358

Query: 294 R--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQ 350
                V +AT VA RG+D+P    V++    ++ E+ +HR GRTGRAG +G++   +   
Sbjct: 359 DSGVNVLVATSVAGRGLDVPSCGCVVNYASPNHLEDYVHRVGRTGRAGNRGVAFTFVNST 418

Query: 351 NMQRRAERLFR---EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
           +  + A  + R   EA  S        +  + E   +++ +      S     K      
Sbjct: 419 DEAKFAPSIVRALVEAGQSKNISQ--ELNELSESYKEKVAKGEARWASSGYKGKGYTYDS 476

Query: 408 LAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
              +D +K+A          L   E +    L+   D     +R       +  +  G +
Sbjct: 477 SELNDSQKLA---------QLEKREALIEAGLLDSDDEEGGPARDQDDDADAGVDGSGKA 527

Query: 468 WFSLSVGSKQKAEARWLMPMLCR 490
               S  SK K E +  + ML  
Sbjct: 528 ----SAPSKAK-EKKDAVGMLAN 545


>gi|167525611|ref|XP_001747140.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774435|gb|EDQ88064.1| predicted protein [Monosiga brevicollis MX1]
          Length = 545

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 117/360 (32%), Positives = 188/360 (52%), Gaps = 10/360 (2%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
           +G+   T++Q       ++ +D++  A TGSGKT+AF L     +  +    S  + P  
Sbjct: 145 KGFDKPTAIQSCCWPIVVQGQDLVGVAATGSGKTLAFTLPALQHV--KGLGRSKTNCPRV 202

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER-RDLQNGAHIVVGTPGRLC 136
           L ++PTRELA+Q+ +  +        + AVC+ G +  R++   L+ G  +V+ TPGRL 
Sbjct: 203 LVLSPTRELALQINKVAQDAVKSLNQISAVCVYGGASKRDQLTALRQGCELVIATPGRLV 262

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           D +    L++SH+  +VLDEAD MLD+GF  DI+ IL +   +R+ LMFSAT    +  +
Sbjct: 263 DFLNDGKLDLSHVSYLVLDEADRMLDMGFERDIKLILGAVGTQRQTLMFSATWPEEVRAI 322

Query: 197 AKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           A NY K+ +RV + SE    NR    +      +    R   ++           ++F  
Sbjct: 323 AANYMKNPLRVTVGSEELSANRNVKQVVDVVEPMEKDRRLLDVLRKHPASKNAKVLIFAL 382

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
            +   +R    L    + VV + G+L+Q +R  AL+  + G + + IATDVAARG+D+  
Sbjct: 383 YKKEAARLESFLQRKSYNVVGMHGDLNQGQREAALRAYKSGDSHILIATDVAARGLDVKG 442

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           + +VI+       E+ +HR GRTGRAG  G++     Q+ +  A  L    REA+V V  
Sbjct: 443 VAVVINYTFPLTIEDYVHRIGRTGRAGATGIAYTFFTQHDKAHAGALGNVLREADVEVPE 502


>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
           psychrerythraea 34H]
          Length = 432

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 108/373 (28%), Positives = 179/373 (47%), Gaps = 7/373 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE---N 66
            +   L+E  Y   T +Q   +      +D++  A TGSGKT  F L +   L  +    
Sbjct: 18  PLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSG 77

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQNG 124
            + S  +    L + PTRELA QV   ++         +      GGVSV+ +   L+ G
Sbjct: 78  SKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGG 137

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D I    + +  +K +VLDEAD ML LGF +++  +L  +PKK++ L+
Sbjct: 138 VDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLL 197

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT    +TTL +    + + + + S +        R   V   ++   + ++++    
Sbjct: 198 FSATFPEQVTTLTQELLNNPIEIQLQSADASTL--VQRVFTVNKGEKTAVLAHLIQQEQW 255

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           + A++F + +       + LA+         G+  Q ERS  L   + G   V IATD+A
Sbjct: 256 RQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIA 315

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I          + ++  
Sbjct: 316 ARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHEDYHHFSVIEKKNK 375

Query: 365 VSVVWEPAPSVEA 377
             +  E     EA
Sbjct: 376 FRLKREQVEGFEA 388


>gi|170085389|ref|XP_001873918.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651470|gb|EDR15710.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 434

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 164/372 (44%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    L   N
Sbjct: 58  LKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVN 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          V                  RD  
Sbjct: 118 GEVS------VLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVTKDAEILRDKT 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVV TPGRL    R K L+  ++K  VLDE D+ML+    R D++ I  ++P  ++
Sbjct: 172 KCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRTTPHHKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT++  I    K +  + + + +  E +       +  +      ++  +  +L 
Sbjct: 232 VMMFSATLAKDIRITCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVSKNKKLSELLD 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  + A      K+L    F  +++   L Q+ER       +    R+ +A
Sbjct: 292 TLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERIKRYTAFKAFEKRILVA 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TD+  RGID+  + +VI+ +   + ++ LHR GR GR G KG+++  +  +  Q     +
Sbjct: 352 TDIFGRGIDVERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFVSSDSDQHVMGAI 411

Query: 360 FREANVSVVWEP 371
                V+V   P
Sbjct: 412 QSRFEVAVPELP 423


>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
 gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
          Length = 569

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 122/358 (34%), Positives = 187/358 (52%), Gaps = 8/358 (2%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +F  I   P+ +  AL+E G V   ++QE  L   L   D++  A+TG+GKT+AFG+ + 
Sbjct: 1   MFAEIGVRPETVA-ALAEVGIVRPFAIQELTLPLALARTDIIGQARTGTGKTLAFGIPVV 59

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             + A+++       P AL + PTREL VQV  ++       G+ V    GG +   +  
Sbjct: 60  QVVQAQDEGAD--GHPQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLS 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  IVVGTPGRL D  R K L+++ ++ +VLDEADEMLDLGF  D+E I+   P++
Sbjct: 118 ALRSGVDIVVGTPGRLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQ 177

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R  ++FSAT+   +         +   VR     E R   +           D+   +  
Sbjct: 178 RHTMLFSATMPGPVIGLARRFMSRPVHVRAEQPDEGRTVPNTQQHVFRAHALDKMEVLAR 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L+      A+VF  TR +  +    LA   F   A+ G+L Q +R  AL+  R G+  V
Sbjct: 238 VLQATDRGLAMVFVRTRRTADKVADDLARRGFAAAAVHGDLGQGQREQALRAFRGGKVDV 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +ATDVAARGID+  +  V++ +   +    LHR GRTGRAG  G+++  +  +   R
Sbjct: 298 LVATDVAARGIDVGGVTHVVNYQCPEDENVYLHRIGRTGRAGGSGVAITFVDWDDLPR 355


>gi|302902561|ref|XP_003048671.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256729605|gb|EEU42958.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 804

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 173/375 (46%), Gaps = 8/375 (2%)

Query: 1   MKIFENIPQVIGEA--LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P  +  A  L    +  LT VQ   +   L+  DVL +A+TGSGKT+AF + +
Sbjct: 51  IKNFSHLPLSVPTASGLEASHFQVLTDVQAQAIPLALKGNDVLGAAKTGSGKTLAFLIPV 110

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++      AL ++PTRELAVQ+   L  +         + IGG S+  E 
Sbjct: 111 LEKLY--RAQWTEYDGLGALILSPTRELAVQIFEVLRKVGRNHVFSAGLVIGGKSLKEEA 168

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G + ++L+ +VLDEAD ++D+GF+  ++ +++  PK
Sbjct: 169 ERLDRMNILVCTPGRMLQHLDQTAGFDANNLQILVLDEADRIMDMGFQSAVDALVEHLPK 228

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE--NRQHSDIDYRAVLVALSDRDNAIV 236
            R+ LMFSAT S  ++ LA+   KD   V++     +   + +    +   L+++ + + 
Sbjct: 229 SRQTLMFSATQSKKVSDLARLSLKDPEYVSVHEAAASATPTTLQQHYISTPLTEKLDTLY 288

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ--MMRDGR 294
             ++ +     IVF S+   V    +        +  L     Q++ +           +
Sbjct: 289 GFIKANLKSKIIVFLSSGKQVRFVYESFRHLQPGIPLLHLHGRQKQIARMEITSRFTAAK 348

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARGID P ++ VI A+   + +  +HR GRT R    G +V  +  + + 
Sbjct: 349 HSCLFATDVVARGIDFPAVDWVIQADCPEDVDTYIHRVGRTARYQSNGRAVLFLDPSEEP 408

Query: 355 RAERLFREANVSVVW 369
              +   +  + +  
Sbjct: 409 GMLKKLEQKKIPIQR 423


>gi|242373863|ref|ZP_04819437.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
 gi|242348417|gb|EES40019.1| ATP-dependent RNA helicase [Staphylococcus epidermidis M23864:W1]
          Length = 447

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 96/423 (22%), Positives = 204/423 (48%), Gaps = 16/423 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ +F L L   
Sbjct: 6   FEHFNLDESLIKAVQDLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHSFLLPLMQK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
           +  +         P A+ +APTRELA Q+ +    L      V   + IGG  + ++++ 
Sbjct: 66  IDVD------VQEPQAIVVAPTRELAQQLFQAASHLSQFKQDVSVKLFIGGTDIEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +G  L+      +++DEAD M+DLG  +D+++I      + 
Sbjct: 120 CNRQPQLIIGTPTRINDLAQGGYLHAHLASNLIVDEADLMIDLGLIEDVDYIAARLDDEA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y      V + S+++   +I++  +    + + +  ++++ 
Sbjct: 180 HIAVFSATIPKSLQPFLNKYLSQPEFVEVDSKSQNKKNIEFYLIPTKGTAKIDKTLSLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +     L     +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 MLNPYLCIIFCNSRENANELANSLNNEGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHDP 413
            +     NV +       ++A   R  ++   D L  +    ++   K+ V     K   
Sbjct: 360 DKGYHFENVDIKNGELKPIKAHDTRRTRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK 419

Query: 414 EKI 416
           +++
Sbjct: 420 QEV 422


>gi|182439289|ref|YP_001827008.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178467805|dbj|BAG22325.1| putative DEAD-box RNA helicase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 537

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 6/367 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL
Sbjct: 75  VEAFADLDMPPGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLAL 134

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R     APLA+ + PTRELA QV   L        + +A  +GG+S+ ++ 
Sbjct: 135 LAR---TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQS 191

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L     
Sbjct: 192 ATLRRGAEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEA 251

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   I  L K +  D V  ++       + +++   L  L + D   V  
Sbjct: 252 DGQRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHV-LHVLDETDKKAVAT 310

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    
Sbjct: 311 KIAAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTAL 370

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R
Sbjct: 371 VATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTR 430

Query: 359 LFREANV 365
           L ++A +
Sbjct: 431 LMQDAGI 437


>gi|302864863|ref|YP_003833500.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302567722|gb|ADL43924.1| DEAD/DEAH box helicase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 635

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 158/565 (27%), Positives = 245/565 (43%), Gaps = 29/565 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E L+ +G      +Q A L   L  +DVL   QTGSGKT+AFGL + + L   N
Sbjct: 27  LPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARLADRN 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G  
Sbjct: 87  R--ARPLHPRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGVE 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 145 IVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL K +  D V  + A      S +D+  +L+   D+    V          
Sbjct: 205 ATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDK--FAVAASIAAREGR 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAAR
Sbjct: 263 TMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+H +   +P++ LHR+GRT RAG  G    ++    +R    +  +A V 
Sbjct: 323 GIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPKQRRTTLAMMEKAGVE 382

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 P+   +R  D          L  + G  +     +  + +P +         R 
Sbjct: 383 ------PAETRVRAGD--------EALAELTGAREPSGVPVRDEPEPRRGGGSRRFGDRD 428

Query: 427 GLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           G              G  RF D D R  +  G      +    F+   G ++  +     
Sbjct: 429 GRGFDRGGRGGFSDRGERRFGDRDGRGERRYGDRPAGERSGDRFADRGGDRRFGDRPAGE 488

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
                 SG  R+  G    + D +F        D   R+   D+    +  G ++ D RG
Sbjct: 489 RYSGERSGGERR-FGRPERRDDRSF-------GDRGERSFG-DRRSDGRSFGEQRSDDRG 539

Query: 546 YKSSGFKSKNSQD-GATKRFKRFKG 569
            +   F  +  +  G  +R    +G
Sbjct: 540 QRGERFGERADRPYGDRQRPATGRG 564


>gi|47224688|emb|CAG00282.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 497

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 103/408 (25%), Positives = 172/408 (42%), Gaps = 40/408 (9%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           ++ FE  P+ I + +   G+   T +Q       +  +D++  AQTG+GKT+A+ L    
Sbjct: 80  LEAFERYPE-IMDNIRRVGFDKPTPIQSQAWPVLMSGEDLIAIAQTGTGKTLAYLLPGFI 138

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +    S  + P  L + PTRELA+Q+  E +  Y           GG   + +   
Sbjct: 139 HMDGQPVPRSKRNGPAMLVLTPTRELALQIEAESKK-YRFLDYTSVCIYGGGDRNGQIAK 197

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKA---------VVLDEADEMLDLGFRDDIEF 171
           +Q+G  IV+ TPGRL D    + +++  +            VLDEAD MLD+GF   I  
Sbjct: 198 VQSGVDIVIATPGRLNDLQMNELIHLRSVTYLVRVSIGFPEVLDEADRMLDMGFEPQIMK 257

Query: 172 ILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
           IL      R+ +M SAT   A+     +       V V        ++      ++    
Sbjct: 258 ILLDVRPDRQTVMTSATWPTAVRRLAKSYLRDPMIVYVGTLDLAAVNTVEQKILIVNEEE 317

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +      I         ++F   +  V   +  +      V +L G+  Q +R  AL+ 
Sbjct: 318 KKFYMFDFIRDMEPLDKVLIFVGRKILVDDLSSDMCLQGISVQSLHGDREQCDREEALRE 377

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG---------- 339
            R+G+ R+ +ATD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG          
Sbjct: 378 FREGKVRILVATDLASRGLDVLDITHVFNYDFPRNIEEYVHRVGRTGRAGWVFFLKKPRV 437

Query: 340 --------------RKGMSVFVIPQNMQRRAER---LFREANVSVVWE 370
                         R G +V ++ ++  + A     +   A   V  E
Sbjct: 438 YSGFSLTSAFFSSRRSGAAVTLVSRDDWKMAPELICILERAGQDVPEE 485


>gi|71747632|ref|XP_822871.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70832539|gb|EAN78043.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 512

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 130/471 (27%), Positives = 206/471 (43%), Gaps = 33/471 (7%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++   + +  A  E G+   T +Q A +      +D++  AQTGSGKT A+ L L +
Sbjct: 41  TFKSLGLCEELIGACKEAGWRMPTRIQVATIPVVSEGRDIIGVAQTGSGKTGAYVLPLVN 100

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +    +       L + PTRELA QV  +   L +  G+ VA  +GG  +  +  +
Sbjct: 101 WLLTQ----AKVPYLSILVMVPTRELAQQVAAQFVMLGSSVGLRVATLVGGADMVDQACE 156

Query: 121 LQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L    H+VVGTPGR+ DH+       +  L A+VLDEAD+ML++ +  +I  IL+  P  
Sbjct: 157 LSRRPHVVVGTPGRVKDHLNNTKGFQLVKLHALVLDEADKMLEMDYEKEINAILEHLPHN 216

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ L+FSAT+S  I  L      D V + +  +N     +    V    +     +   L
Sbjct: 217 RQTLLFSATLSTKIDRLQNASLNDPVLLEVHRKNTTVDTLKQYYVFAPFAQMLPYLHLYL 276

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                 + +VFC + A V R T  L     Q + L G + Q+ R+ AL   ++GR R+ +
Sbjct: 277 TRESGNHILVFCRSAALVHRITLTLRVLGHQALPLMGRMDQKNRNIALTKFKEGRVRILV 336

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TDVA RG+D+P  ++V++  L    E+ +HR GRT RAG +G +V +I Q      +++
Sbjct: 337 CTDVAQRGLDIPRTDVVVNFALPDRVEDYIHRVGRTARAGAQGKAVNIISQYDIVLLQKV 396

Query: 360 FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
                V     P      I + D   +LQ                       D E+ A  
Sbjct: 397 EASTGVKCEEWP------ISDGDVAAVLQRV--------------------EDAEQEAVK 430

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            +R          E   ++      R R D+               +    
Sbjct: 431 EMRESDQEAKFEREARQLTTARRAKRERGDNDMGYDDAKHGTADFSTLRLR 481


>gi|325114733|emb|CBZ50289.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
          Length = 685

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 105/429 (24%), Positives = 187/429 (43%), Gaps = 21/429 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  + E L  R     T +Q   L   L  + +L +A TGSGKT AF L L + L    
Sbjct: 259 LPLWLQERLKGRSIEKPTPIQMQALPLLLGGQHLLATAPTGSGKTFAFLLPLITLLKRPG 318

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F+       L + P+RELA Q  RE + L    G    +         +         
Sbjct: 319 KEFARL-----LVVCPSRELAKQTQREFDSLAGARGFRCRLLDEQKQGTDQPLSQAKRVD 373

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRMLMF 185
            V  TP RL   +R   ++++  + +VLDEAD++LDLGF   + E +   +  + ++ +F
Sbjct: 374 AVATTPLRLVQFLRDGRVSLAQCRHLVLDEADKLLDLGFAPQLDEILAGCTFPRLQVCLF 433

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY--HG 243
           SAT+ P +  LA +   + V ++I + N   + I+   +     +     +  L      
Sbjct: 434 SATLPPEVLRLADSLLHNPVHISIGAPNAAATSIEQELLFCTNEEGKLLALRTLHLTGKF 493

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F  ++    +    L      V  +  + ++++R + ++  R G+  V I TDV
Sbjct: 494 VPPVLIFVQSKERAKQLYCELVYDGIFVECIHADKTKKQRDDIVEAFRRGQIWVLICTDV 553

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP----QNMQRRAERL 359
            ARG+D  ++ELVI+ +   +    +HR GRTGRAGR+G ++         N++     +
Sbjct: 554 MARGVDFKNVELVINYDFPQSAAVYIHRIGRTGRAGRQGRAITFYTTTDIPNLRSVVGVM 613

Query: 360 FREANVSVVW--EPAPSVEAIRERDAQR-------ILQDPLFLDSIQGDEKKMVDVLLAK 410
            + +   V    +    + A ++RD Q+       IL  P      +   ++ ++   AK
Sbjct: 614 QQTSTCEVPEWLQKMTKMTAKQKRDLQKRAPERKPILTTPATDVRKEKRRQQAIEASKAK 673

Query: 411 HDPEKIAAG 419
               + A  
Sbjct: 674 KRRREAAEA 682


>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
 gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
          Length = 852

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 185/441 (41%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 DPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ +  VV DEAD + ++GF + +   L   P  R+M+MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVMFSATL 224

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NA 247
              +   A+    D V + +  E++    +  + +     DR  A+V +L+Y   K    
Sbjct: 225 PKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHCRPDDRYTALVVLLKYVIPKESQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 345 IDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + + +       AG LR     
Sbjct: 405 N------------------IHDSSTMGTIPQDLLEEEHLSVNEIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|66363286|ref|XP_628609.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
 gi|46229614|gb|EAK90432.1| abstrakt protein SF II helicase + Znknuckle C2HC (PA)
           [Cryptosporidium parvum Iowa II]
          Length = 570

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 177/390 (45%), Gaps = 28/390 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            PQ I +AL+ +G    + +Q   L   L  +D++  A TGSGKT+ F L +    L   
Sbjct: 115 FPQEILDALASKGISKPSQIQMQGLPIILMGRDLIGLAFTGSGKTIVFVLPMIMFSLEAE 174

Query: 67  DR--FSPASAPLALAIAPTRELAVQVGREL---------------------EWLYAKTGV 103
               F     P +L + P+RELA+Q+ R +                              
Sbjct: 175 LSLPFKGMEGPHSLVLCPSRELALQIKRIIDEFIEFLTGKSNKSDEYSSNPRNTKYPELR 234

Query: 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
           V  V  G  S  +       G H++V TPGRL D ++ + + +   +   +DEAD + + 
Sbjct: 235 VSCVIGGEDSGKQLAEYKMKGIHMMVATPGRLADLLKRRKVTLQQCEYFCMDEADRLTEQ 294

Query: 164 GFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA 223
           GF + + +I DS  ++R+ ++FSAT+       A+    D V VN+      +  +    
Sbjct: 295 GFDEHLRYIFDSFYERRQTVLFSATMPRKTQEFAQTALIDPVVVNVGRAGAANLRVIQEF 354

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
             V    R  ++++ L+    +  ++F   +  V    + L       VA+ G L+Q++R
Sbjct: 355 EYVRQERRLVSLLSCLQKTAPR-VLIFSENKKDVDEIHEYLLLKGVNAVAIHGGLTQEQR 413

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
             +++  R+G   V + TDVA++G+D  +++ VI+ ++    EN +HR GRTGR G  G+
Sbjct: 414 FRSIEKFRNGEMDVLVGTDVASKGLDFENIQHVINFDMPKEIENYVHRIGRTGRGGSVGV 473

Query: 344 SVFVI----PQNMQRRAERLFREANVSVVW 369
           S   I    P+ +    + L  EA   +  
Sbjct: 474 STTFIDNTLPEALLCDLKALLIEAKQEIPP 503


>gi|146308580|ref|YP_001189045.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina ymp]
 gi|145576781|gb|ABP86313.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
          Length = 482

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 111/371 (29%), Positives = 179/371 (48%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ + LL   
Sbjct: 101 LAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLLQTP 160

Query: 67  DRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                    P AL IAPTREL VQ+ ++   L   T   V++   G     + ++     
Sbjct: 161 PPKERYMGEPRALIIAPTRELVVQIAKDAVALTKYTKLNVMSFVGGMDFDKQLKQLESRF 220

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 221 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGDRQT 280

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA SD+   + N++  +
Sbjct: 281 LLFSATFTEDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASSDKYKLLYNLVTQN 340

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +  V R  + L         +SG++ Q +R   L+  R G  RV +ATD
Sbjct: 341 AWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGHIRVLVATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +   
Sbjct: 401 VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSSGTSISFAGEDDAFALPPIEAL 460

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 461 IGRKIQCEMPP 471


>gi|332284754|ref|YP_004416665.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
 gi|330428707|gb|AEC20041.1| ATP-dependent RNA helicase DbpA [Pusillimonas sp. T7-7]
          Length = 444

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 128/387 (33%), Positives = 195/387 (50%), Gaps = 12/387 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y  +T +Q   L   L  +D++  A+TGSGKT AFGL +   L         A    AL 
Sbjct: 6   YQAMTLIQAQSLPLILAGQDLIAQAKTGSGKTAAFGLGIVHKLDP------GAYNIQALV 59

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
           + PTREL+ QV  EL  L    G +  +   GG  +  +   L+ GAHIVVGTPGRL DH
Sbjct: 60  LCPTRELSEQVANELRRLARAIGNIKVITLCGGTPIRPQIESLKFGAHIVVGTPGRLMDH 119

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           I    ++ S L  +VLDEAD MLD+GF DD+  I+ S P  R+  +FSAT +  I   + 
Sbjct: 120 IERDTVDFSGLHTLVLDEADRMLDMGFYDDVTKIVGSCPGTRQTQLFSATYADDIRKASA 179

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            +     +          S I+ R   +    R +A+  +L +   ++ + FC+T+A   
Sbjct: 180 RF-LRKPKEVKVESVHDASQIEQRFYEIDADRRHSAVAQLLEHFRPESTLAFCNTKAQCR 238

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L    F  +AL G+L Q++R + L    +    V +ATDVAARG+D+  L+ VI+
Sbjct: 239 ELAAYLESRGFSALALHGDLEQRDREDVLIQFANRSCSVLVATDVAARGLDIDALDAVIN 298

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            E++ +PE  +HR GRTGR   KG+++ +      R A ++ +  N  + W    +++  
Sbjct: 299 VEITPDPEVHIHRIGRTGRGDAKGLALSLCAPYEMRWANQIEQYQNQPISWANPKTLKPA 358

Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVD 405
                   L+ P+    IQG +K  + 
Sbjct: 359 PGGR----LRAPMVTLCIQGGKKDKLR 381



 Score = 57.3 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV 511
                           +  G K K     L+  L + +GI+ + IG I +   ++FV
Sbjct: 356 KPAPGGRLRAPMVTLCIQGGKKDKLRPGDLLGALTKDAGIDGKQIGKINILEFVSFV 412


>gi|330504745|ref|YP_004381614.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
 gi|328919031|gb|AEB59862.1| ATP-dependent RNA helicase RhlB [Pseudomonas mendocina NK-01]
          Length = 482

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 180/371 (48%), Gaps = 4/371 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+   T +Q  +L   L+ +D +  AQTG+GKT AF +++ + LL   
Sbjct: 101 LAPELMHAIHDLGFPYCTPIQAGVLGYTLKGQDAIGRAQTGTGKTAAFLISIITQLLQTP 160

Query: 67  -DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
             +      P AL IAPTREL VQ+ ++   L   T   V++   G     + ++     
Sbjct: 161 APKERYMGEPRALIIAPTRELVVQIAKDAAELTKYTKLNVMSFVGGMDFDKQLKQLESRF 220

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I+V TPGRL D  +   +++  ++ +VLDEAD MLD+GF   +  I+  +P K     
Sbjct: 221 CDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGDRQT 280

Query: 185 --FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
             FSAT +  +  LAK +  +   V I  EN     ++     VA +D+   + N++  +
Sbjct: 281 LLFSATFTDDVMNLAKQWTVNPAIVEIEPENVASDTVEQHVYAVASADKYKLLYNLVTQN 340

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF + +  V R  + L         +SG++ Q +R   L+  R G  RV +ATD
Sbjct: 341 AWDRVMVFANRKDEVRRIEERLTRDGVSAAQMSGDVPQHKRIKVLEGFRAGHIRVLVATD 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           VA RGI +  +  VI+  L  +P++ +HR GRTGRAG  G S+    ++       +   
Sbjct: 401 VAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGTSISFAGEDDAFALPPIEAL 460

Query: 363 ANVSVVWEPAP 373
               +  E  P
Sbjct: 461 IGRKIQCEMPP 471


>gi|312870719|ref|ZP_07730826.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 3008A-a]
 gi|311093731|gb|EFQ52068.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 3008A-a]
          Length = 458

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 203/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L +
Sbjct: 8   DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDS 67

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 68  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 121

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 122 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 181

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 182 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 241

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 242 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 301

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 302 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 361

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 362 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 420

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 421 AIQADRQQKKKI--EERIKARKQKRQRKRERDRLRED 455


>gi|112419200|gb|AAI22412.1| Ddx10 protein [Danio rerio]
          Length = 439

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 9/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +   + L E  Y   T +Q   +   L+ +DVL +A+TGSGKT+AF + +   
Sbjct: 72  FSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLEC 131

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E   ++      AL I+PTRELA Q    L  +         + IGG  +  E   +
Sbjct: 132 LYREQ--WTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKI 189

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+      L         + S L  +VLDEAD +LD+GF D +  I+++ PK R+
Sbjct: 190 HRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQ 249

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD   V +  + +  +        V+  L  + N + + L
Sbjct: 250 TLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFL 309

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R H  K  IVF +    V    ++       +  L+    QQ+              + V
Sbjct: 310 RSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAV 369

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRRA 356
             ATD+AARG+D P +  V+  +   +    +HR GRT R    G ++  ++P   +   
Sbjct: 370 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGGALLVLLPSEEKGMI 429

Query: 357 ERLFREANVS 366
            +L  +    
Sbjct: 430 SQLQEKKKKK 439


>gi|254228859|ref|ZP_04922281.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262396791|ref|YP_003288644.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
 gi|151938536|gb|EDN57372.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
 gi|262340385|gb|ACY54179.1| ATP-dependent RNA helicase [Vibrio sp. Ex25]
          Length = 416

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 188/379 (49%), Gaps = 7/379 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSHTIPYILEGKDIVGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAEND-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
            ++ +++      +    L + PTRELA QV   ++         +      GGVSV+ +
Sbjct: 69  KIVQQDETNHRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTL+++  +D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPDKVTTLSQHLLRDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPAPSVE 376
            + ++    +  E     E
Sbjct: 367 VIEKKNKFQLEREQVEGFE 385


>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
 gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
          Length = 499

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 127/377 (33%), Positives = 188/377 (49%), Gaps = 12/377 (3%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I  AL+ERG  +  ++QE  L   L   D++  A+TG GKT  FG+ L   +      
Sbjct: 26  PEIVTALAERGITHTFAIQELTLPLALAGSDLIGQARTGMGKTYGFGVPLLHRISTGEAT 85

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLY---------AKTGVVVAVCIGGVSVHRERR 119
                 P AL I PTREL +QV ++L+                + V    GG    ++  
Sbjct: 86  RELDGTPRALVIVPTRELCLQVTQDLKIAATGLTASTGSGTRPLKVLAIYGGTPYEQQTE 145

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  +VVGTPGRL D      L +  ++A+VLDEADEMLDLGF  DIE +L   P+K
Sbjct: 146 ALEKGVDVVVGTPGRLLDLANQSKLVLGKVEALVLDEADEMLDLGFHPDIEKLLRMVPEK 205

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ ++FSAT+   I T       +   +R   A     H +           D+   +  
Sbjct: 206 RQTMLFSATMPGPIITLARTFLTKPTHIRAEAADSGATHENTTQHVYRAHSLDKPEVVAR 265

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+  G    ++FC T+ +  +    LAE  F+V A+ G+L Q  R  +L+  R G   V
Sbjct: 266 ILQAEGRGATMIFCRTKRTAQKLADDLAERGFRVGAIHGDLGQGAREKSLKAFRSGDVDV 325

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V ++  +   R  
Sbjct: 326 LVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDDLPRWG 385

Query: 358 RLFREANVSVVWEPAPS 374
            + +   +    EPA +
Sbjct: 386 LIDKALGLDFG-EPAET 401


>gi|293332577|ref|NP_001169296.1| hypothetical protein LOC100383160 [Zea mays]
 gi|224028479|gb|ACN33315.1| unknown [Zea mays]
          Length = 508

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 188/388 (48%), Gaps = 11/388 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-LA 64
            +P  + E  S   +   + +Q       L  +D +  A TGSGKT+AFG+     +   
Sbjct: 96  ELPSQVLECCSA--FARPSPIQAHAWPFLLDGRDFIGIAATGSGKTIAFGVPALMHIRKK 153

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +    + P  L ++PTRELA Q+   L    A  G+      GG     +   L++G
Sbjct: 154 VGGKAGKKAVPRCLVLSPTRELAQQIADVLSEAGAPCGIKSVCLYGGTKKEPQISALKSG 213

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             IV+GTPGR+ D I      ++ +  VVLDEAD MLDLGF  ++  IL  +   R+M+M
Sbjct: 214 VDIVIGTPGRMKDLIEMGVCCLNEVSFVVLDEADRMLDLGFEPEVRAILSQTSSVRQMVM 273

Query: 185 FSATIS--PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---NIL 239
           FSAT                    V  + +   + D+     ++    RD+ ++   +  
Sbjct: 274 FSATWPLAVHKLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRTRDSRLLALLDKY 333

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               +   +VF   +   +R   +L    ++ V++ G+ +Q +R+ AL + ++G+  + I
Sbjct: 334 HQAQSNRVLVFVLYKKEAARVETMLQRRGWKAVSVHGDKAQHDRTKALSLFKEGKCPLMI 393

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVA+RG+D+PD+E+VI+       E+ +HR GRTGRAG+KG++     Q  +  A  L
Sbjct: 394 ATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKKGVAHTFFTQANKALAGEL 453

Query: 360 ---FREANVSVVWEPAPSVEAIRERDAQ 384
               REA+  V          +++++++
Sbjct: 454 VNVLREADQVVPPALMKFGTHVKKKESK 481


>gi|281207287|gb|EFA81470.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
          Length = 922

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 113/413 (27%), Positives = 199/413 (48%), Gaps = 25/413 (6%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P  I + L ++G    T +Q   +   L  +D++  A TGSGKT+ F L +  
Sbjct: 211 MK----LPHAIIDCLKKKGIKKPTPIQIQGIPVILSGRDMIGIAFTGSGKTLVFTLPMVL 266

Query: 61  TLLAENDRFS--PASAPLALAIAPTRE-------LAVQVGRELEWLYAKTGVVVAVCIGG 111
             +    +        P  L I P+RE         V++   L        +   +C+GG
Sbjct: 267 FAMEMELKLPLISGEGPFGLIICPSRELARQTYDGVVEMAGALSKAGGYPPLRTLLCMGG 326

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +    +  +L+ G H++V TPGRL D +  K +N+   K + LDEAD ++DLGF ++I  
Sbjct: 327 IDFREQEPELRKGVHMIVATPGRLLDMLNKKKINLISCKYLGLDEADRLIDLGFEEEIRG 386

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           ++D+   +R+ L+FSAT+   I   A++     V VN+      + D+      V    +
Sbjct: 387 VMDNFTAQRQTLLFSATMPKKIQNFARSALVRPVEVNVGRAGAANLDVIQEVEYVKQEAK 446

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       ++FC  +  V    + L     + V+L G+ +Q+ER  A++M +
Sbjct: 447 IVYLLECLQKTPPP-VLIFCENKKDVDDIYEYLLLKQVEAVSLHGDKTQEERDIAIKMFK 505

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G+  V IATDVA++G+D PD++ VI+ ++    EN +HR GRTGR     + +      
Sbjct: 506 EGKKDVLIATDVASKGLDFPDIQHVINFDMPKEIENYIHRIGRTGRC----VCIICYTMR 561

Query: 352 MQRRAERLFREAN------VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
           M  R E +  ++            E  PS+E   +R+++  ++     +S+ G
Sbjct: 562 MIPR-EHIQEDSKRHQQQQFEAYQEEFPSLEESSQRNSKSKMKKSGSTNSLNG 613


>gi|307198933|gb|EFN79685.1| Probable ATP-dependent RNA helicase DDX52 [Harpegnathos saltator]
          Length = 452

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 132/368 (35%), Gaps = 15/368 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K    I + +   +    Y+  T VQ   +   L  +++L  A TGSGKT AF L +  
Sbjct: 27  LKTKYQISENLMNNMKACDYICPTPVQMQAMPILLEGRNILACAPTGSGKTAAFLLPIIC 86

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           +L    ++        A+ ++PTRELA Q  RE   L       + +         +   
Sbjct: 87  SLQKPQNK-----GFRAVILSPTRELAKQTYRECLSLSDGYDFRIHIINKTNQALTKYGP 141

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +    ++ T  +    +  +      LK V     DE  D  F D I        +  
Sbjct: 142 SSSQKFDILITTPKRLVFLLNQDPPAISLKNVEWLIVDEA-DKLFEDGIRGFRQQLDEIT 200

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNI---------ASENRQHSDIDYRAVLVALSDR 231
           +            +           R N+                        + +   +
Sbjct: 201 KACTNDNLHCGMFSATNTPVVTKWCRRNMKRLVTVTVGQRNAATDLVEQELVFVGSEKGK 260

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + N++R   A   ++F  ++         L      V  +  + +  +R N ++  R
Sbjct: 261 LMELRNMIRKGVAPPVLIFVQSKERAQELFNELIYDGVYVDVIHADRTVTQRDNTVRCFR 320

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G+  + I T++  RGID   + LV++ +  S+  + +HR GRTGRAG KG ++      
Sbjct: 321 EGKIWMLICTELMGRGIDFIGVNLVVNYDFPSSAISYIHRIGRTGRAGHKGKAITFFTTQ 380

Query: 352 MQRRAERL 359
                  +
Sbjct: 381 DTANLRSI 388


>gi|302845521|ref|XP_002954299.1| hypothetical protein VOLCADRAFT_76220 [Volvox carteri f.
           nagariensis]
 gi|300260504|gb|EFJ44723.1| hypothetical protein VOLCADRAFT_76220 [Volvox carteri f.
           nagariensis]
          Length = 485

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 121/490 (24%), Positives = 220/490 (44%), Gaps = 29/490 (5%)

Query: 18  RGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
            GY +LT VQ   +   L  +DVL +A+TGSGKT+AF +  A  L     +F P +   A
Sbjct: 1   MGYTHLTEVQARTIPALLTGRDVLGAARTGSGKTLAFLVPCAELLY--RAKFMPRNGTGA 58

Query: 78  LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCD 137
           + I+PTRELA+Q+      L+        + +GG +   E   L  G +++V TPGRL D
Sbjct: 59  VIISPTRELALQIYGVARDLFKYHTQTHGIVMGGANRRTEAEKLVKGVNLLVSTPGRLLD 118

Query: 138 HIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
           H++        +L  +V+DEAD +L++GF +++  I+   PK+R+ ++FSAT +  +  L
Sbjct: 119 HLQNTRGFVFRNLACLVIDEADRILEIGFEEEMRQIIKILPKERQTMLFSATQTTKVEDL 178

Query: 197 AKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
           A+   K         + R  +     +    +V    +   +   L+ +  K  +VF S+
Sbjct: 179 ARISFKHKPLYVGVDDGRSVATREGLEQGYCVVPADKKFLLLFTFLKKNANKKVMVFFSS 238

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
             SV   +++L      V  + G+  QQ+R+            + + TDVAARG+D+P +
Sbjct: 239 CNSVKFHSELLNYIDIPVKDIHGKQKQQKRTTTFFEFCQAEKGILLCTDVAARGLDIPAV 298

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQRRAERLFREANVSVVWEPA 372
           + +I  +   +P   +HR GRT R G++G     ++    +    R  ++A V +     
Sbjct: 299 DWIIQFDPPDDPREYIHRVGRTAR-GKEGRGRALLLLLPEELGFLRYLKDAKVPLNEYDF 357

Query: 373 PSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI----AAGFLRIHRAG 427
           P+ + A  +   +R+++   +L     D  +   +    H  ++I          + R+ 
Sbjct: 358 PASKLANVQSQLERLVEKNYYLHQSAKDAFRSTILAYNSHSLKEIFNVHRLDLQAVARSF 417

Query: 428 LCAPEEITPVSLVSGRDRFRDDSR------------AFKVGGGSRDNFKGSSWFSLSVGS 475
             +      + L S     R  +R             ++ G G+   F  S+ +    G 
Sbjct: 418 GFSVPPRVNLQLESHSSHSRKAARLSGAGGGPKGGADYRRGMGTGHKFSASNPY----GK 473

Query: 476 KQKAEARWLM 485
           +   + R  +
Sbjct: 474 RDAGDKRQFV 483


>gi|118618015|ref|YP_906347.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
 gi|118570125|gb|ABL04876.1| ATP-dependent RNA helicase RhlE [Mycobacterium ulcerans Agy99]
          Length = 517

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 178/378 (47%), Gaps = 14/378 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     I  AL ER      ++QE  L   L   D++  A+TG GKT AFG+ L 
Sbjct: 13  KTFAELGVRDEIVRALGERDIEGPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLL 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT----------GVVVAVCI 109
             + +         AP AL + PTREL +QV  +L                  + V    
Sbjct: 73  QRVSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIY 132

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DI
Sbjct: 133 GGRAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLYVLVLDEADEMLDLGFLPDI 192

Query: 170 EFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           E IL   P  R+ ++FSAT+   I T       Q   +R         H   +       
Sbjct: 193 ERILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAH 252

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL
Sbjct: 253 ALDKVELVTRVLQARERGATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKAL 312

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V +
Sbjct: 313 KSFRRGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTL 372

Query: 348 IPQNMQRRAERLFREANV 365
           +  +   R   + +   +
Sbjct: 373 VDWDELPRWTMIDKALGL 390


>gi|239942478|ref|ZP_04694415.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239988942|ref|ZP_04709606.1| putative ATP-dependent RNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291445934|ref|ZP_06585324.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291348881|gb|EFE75785.1| ATP-dependent RNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 742

 Score =  167 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 209/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 66  LPEGIVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAAL---A 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 123 GGRTEKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 182

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 183 VLVATPGRLRDIINRGACSLEDVQVAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 242

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I TL K Y  + V   + S     + + +  ++V    +D A V          
Sbjct: 243 ATMENEIGTLVKRYLSNPVTHEVDSAQGNVTTMSHHVLVV--KPKDKAPVTAAIAARKGR 300

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L+  + G     +ATDVAAR
Sbjct: 301 TIIFVRTQLGADRIAEQLIESGVKADALHGGMTQGARTRVLEDFKKGYVNALVATDVAAR 360

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G+ V +   + +R+  RL  +A V 
Sbjct: 361 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGKSGVVVSLALPHQRRQIFRLMEDAGVD 420

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                           A+  +     L  +Q D         A+ +   +     R+ R 
Sbjct: 421 ASRHIVQGAGVFEPEVAE--ITGARSLTEVQADSANNAAKQ-AEREAADLTKQLERVQRR 477

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
            +   EE   +   + R+R  D 
Sbjct: 478 AVELREEADRLVARAARERGDDP 500


>gi|217961776|ref|YP_002340346.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|222097732|ref|YP_002531789.1| ATP-dependent RNA helicase, dead/deah box family [Bacillus cereus
           Q1]
 gi|229141022|ref|ZP_04269565.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
 gi|217063251|gb|ACJ77501.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           AH187]
 gi|221241790|gb|ACM14500.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
           Q1]
 gi|228642455|gb|EEK98743.1| ATP-dependent RNA helicase yqfR [Bacillus cereus BDRD-ST26]
          Length = 436

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPG 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|225460999|ref|XP_002278373.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 750

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 106/398 (26%), Positives = 184/398 (46%), Gaps = 17/398 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P  Q   + L +  YV +T +Q A L   L  +D+L +A+TGSGKT+AF + +   
Sbjct: 72  FDRLPLSQKTIDGLKKSEYVTMTEIQRASLPHSLCGRDILGAAKTGSGKTLAFLIPVLEK 131

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R+ P     ++ I+PTREL  Q+   L+ +         + IGG       ++ 
Sbjct: 132 LY--RLRWGPEDGVGSIIISPTRELTGQLFDVLKSVGKYHSFSAGLLIGGRKDVGMEKEH 189

Query: 122 QNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  +I+V TPGRL  H+      + S L+ +VLDEAD +LD+GF+  +  I+   PK R
Sbjct: 190 VNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKALNAIISQLPKHR 249

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + L+FSAT + ++           + + V+  S     + +   A++V L  + + + + 
Sbjct: 250 QTLLFSATQTKSVQDLARLSLKDPEYLSVHEESATATPNRLQQTAMIVPLDQKLDMLWSF 309

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-LQMMRDGRARV 297
           ++ H     +VF ++R  V    +   +    +          ++    +         V
Sbjct: 310 IKAHLNSRILVFFASRKQVKFVFEAFKKLRPGIPLKCLHGKMNQQKRMGIYSQFCESRSV 369

Query: 298 CIATDVAARGIDL-PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +TDVA+RG+D    ++ VI  +   +    +HR GRT R   +G SV  +  +     
Sbjct: 370 LFSTDVASRGLDFNKGVDWVIQVDCPEDVAAYIHRVGRTARYHSEGRSVLFLVPSETEML 429

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQ--RILQDPLF 392
           ++L       V   P   ++A  +R  Q  R+LQD L 
Sbjct: 430 KKLE------VAKIPIHLIKANTKRLQQVSRLLQDLLV 461


>gi|223056258|gb|ACM80367.1| vasa [Eucidaris tribuloides]
          Length = 498

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 115/383 (30%), Positives = 184/383 (48%), Gaps = 14/383 (3%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+  ++   +   + +  Y   T VQ+  +      +D++  AQTGSGKT AF L +
Sbjct: 81  IRSFDEADLDDKVRANVLKAKYDKPTPVQKYGIPIISAGRDLMACAQTGSGKTAAFXLPI 140

Query: 59  ASTLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + +L      S ++    PL   ++PTRELA+Q   E       T +   V  GG  V 
Sbjct: 141 XTGMLTNAGAVSCSNVIQEPLTXIVSPTRELAIQXYNEARKFCRMTTLRPVVVYGGTXVS 200

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  ++Q GA IVV TPGRL D I    + +  L  +VLDEAD MLD+GF  +I+ ++D 
Sbjct: 201 YQMSEVQKGAGIVVATPGRLHDFINRGYIGLGKLCYLVLDEADRMLDMGFGPEIQKLIDH 260

Query: 176 SPKK----RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
                   R+ LMFSAT    +   A  Y  D + + +       SDI+ R   V    +
Sbjct: 261 PHXPKKGDRQTLMFSATFPNXVQERAGMYLNDYLFLXVGRVGGAASDIEQRVFQVEQFAK 320

Query: 232 DNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
              +++I          +VF  T+ +      +L++  F   ++ G+  QQER  AL   
Sbjct: 321 REKLMDILREQKDDDRTLVFVETKRNADFLASLLSQSGFPTTSIHGDRMQQEREEALHHF 380

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
             G+A + +AT VAARG+D+P ++ V++ +L    +  +HR GRTGR G  G S      
Sbjct: 381 XIGKAPILVATSVAARGLDIPGVKHVVNYDLPDVIDEYVHRIGRTGRVGNLGRSTSFYDA 440

Query: 349 --PQNMQRRAERLFREANVSVVW 369
               ++ R   ++  +A   V  
Sbjct: 441 GKDASIARALIKVLADAQQDVPE 463


>gi|13161879|emb|CAC33024.1| hypothetical protein [Takifugu rubripes]
          Length = 476

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 186/422 (44%), Gaps = 29/422 (6%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++     + +   + G    T VQE  +   L+  D +  A+TGSGKT AF L +
Sbjct: 1   MADFSSLGLSDWLIKQCKQLGIQKATPVQENCVPAILQGSDCMGCAKTGSGKTAAFVLPV 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +            L + PTR LA Q+  +   L    G+   + +GG+ +  + 
Sbjct: 61  LQKLSEDP------YGIFCLVLTPTRSLAYQIAEQFRVLGKPLGLKDCIIVGGMGMVTQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGL----NISHLKAVVLDEADEMLDLGFRDDIEFILD 174
            +L N  H+VV TPGRL DHIR         I  L     D   E     F  D+E IL 
Sbjct: 115 LELSNQPHVVVATPGRLADHIRSSSTFSLAKIQFLVMDEADRLLEQGCTDFTKDLETILT 174

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + P KR+ L+FSAT++  +  L              SE R   ++D R +L     +D  
Sbjct: 175 AVPAKRQTLLFSATLTDTLQELKHIAMNKPFFWESKSECRTVEELDQRYILTPEKVKDAY 234

Query: 235 IVN----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +V+        H   + I+F ST       T +L +  F  ++L   + Q +R   L   
Sbjct: 235 LVHLIQTFTDQHDDWSIIIFTSTCKYCQILTMMLQKFHFPTISLHSMMKQVQRFANLAKF 294

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           +    ++ IATDVAAR +D+P +++VI       P+  +HR GRT RAG  G+S+ ++ Q
Sbjct: 295 KASVYKILIATDVAARCLDIPTVQVVITNNTPGLPKIYIHRVGRTARAGN-GVSITLVTQ 353

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL-------QDPLFLDSIQGDEKKM 403
                   +  +       +  P    + E++  +IL       ++   L+S   DEKK 
Sbjct: 354 YDIHLVHSIEEQIR-ETKLKEFP----VEEKEVLKILTQVNVTRRECEILESTDFDEKKE 408

Query: 404 VD 405
           ++
Sbjct: 409 IN 410


>gi|319792321|ref|YP_004153961.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315594784|gb|ADU35850.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 667

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/417 (30%), Positives = 195/417 (46%), Gaps = 47/417 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK----------DVLVSAQTGSGKTVAFGL 56
           +   +  A+++ G+   T+VQ+ ++   +  +          D++VS+QTGSGKT AF L
Sbjct: 84  LAPELIAAVADLGFTQPTTVQDKVIPLAMGGEAGQDGKARFVDLMVSSQTGSGKTAAFLL 143

Query: 57  ALASTLLAE------------------------------------NDRFSPASAPLALAI 80
            +  TLL                                      N R   A+ P AL +
Sbjct: 144 PVLHTLLKRQAEAEAEAKAEFQRLAAEAAARGEAAPKKPKRKDPTNTRHFKAATPGALIL 203

Query: 81  APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR 140
            PTRELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R
Sbjct: 204 CPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIAKLQNADLVVATPGRLLDLQR 263

Query: 141 GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
            + L +  +K +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA+  
Sbjct: 264 SQQLKLDQVKFLVVDEADRMLDLGFSDDLAEVNQLTIERQQTMMFSATFAPRIQQLAQRV 323

Query: 201 QKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
            ++  RV I S   +H++I            +   + + LR      AIVF ST+     
Sbjct: 324 MREPQRVTIDSPQEKHANIKQSLYWADNSQHKRKLLDHWLRDTSINQAIVFASTQVECDG 383

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
               L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V + 
Sbjct: 384 LANDLQQEGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTITHVFNF 443

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
            L    E+  HR GRTGRAGR G+++       +R+   + + +      E    +E
Sbjct: 444 GLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEQYSRQQFKAEVVAGLE 500


>gi|152975569|ref|YP_001375086.1| DEAD/DEAH box helicase domain-containing protein [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024321|gb|ABS22091.1| DEAD/DEAH box helicase domain protein [Bacillus cytotoxicus NVH
           391-98]
          Length = 434

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 117/375 (31%), Positives = 199/375 (53%), Gaps = 9/375 (2%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F  +   +     L E G    T +QE  +   +  KDV+  A+TG+GKT+AF L +
Sbjct: 4   LKKFLELGMSETFQHTLRENGIAEATPIQEKAIPVIMDGKDVIGQAKTGTGKTLAFVLPI 63

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +         AS   AL +APTRELA+Q+  E++ +      +  +   GG  V ++
Sbjct: 64  LENIDPN------ASDIQALIVAPTRELALQITTEIKKMLVHKQDIHVLAIYGGQDVEQQ 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            + L+   HIVV TPGRL DH+R + + +S++  VVLDEAD+ML  GF  DIE IL+ +P
Sbjct: 118 MKKLKGNTHIVVATPGRLLDHLRRETIVLSNVSMVVLDEADQMLHFGFLYDIEHILEETP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           + ++ ++FSAT+   I  LAK Y K+   + I S      +I  R +      + +A+  
Sbjct: 178 ENKQTMLFSATMPKDIKKLAKRYMKEPQVIQIQSAEVTVENIKQRVIETTDRAKQDALRY 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++       A++FC T+  V++    L  + +    L G+LSQ +R   ++  R+ + + 
Sbjct: 238 VMERDQPFLAVIFCRTKRRVTKLFTALKGYGYNCDELHGDLSQAKRERVMKNFREAKIQY 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVAARG+D+  +  V + ++  + E+ +HR GRTGRAG  G+++  +    +   +
Sbjct: 298 LIATDVAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGTGLAITFVAPKDKMYLK 357

Query: 358 RLFREANVSVVWEPA 372
            + +    ++  +  
Sbjct: 358 EIEKYIGSTLQRQEI 372


>gi|324328191|gb|ADY23451.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 436

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPG 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|328957654|ref|YP_004375040.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
 gi|328673978|gb|AEB30024.1| ATP-dependent RNA helicase; cold shock [Carnobacterium sp. 17-4]
          Length = 451

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 107/408 (26%), Positives = 184/408 (45%), Gaps = 13/408 (3%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   + +A++E G+   T VQE ++      K V+  +QTGSGKT  F L L +
Sbjct: 4   TFEKFGLQPFLIDAINEIGFTKPTEVQEKLIPAIKSGKSVIGQSQTGSGKTHTFLLPLIN 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHRE 117
            +               +   P+RELA Q+ +   +L        +V     G     + 
Sbjct: 64  KIDPSRKEV------QVVITTPSRELAEQIYQAALQLVEKAPAKIIVQNFVGGTDKKRQI 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +      HIV+GTPGR+ D +  K L I     +V+DEAD  LD+GF  D++ I    P
Sbjct: 118 TKLAGTQPHIVIGTPGRILDLVTEKALLIYTSPVLVIDEADMTLDMGFLTDVDQIASKLP 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K +ML+FSATI   +    K Y  + +   I  +      I+   +     DR + I  
Sbjct: 178 EKLQMLVFSATIPIKLQPFLKKYMSNPLFEQIQPKAIISPTIENWLISTKGKDRIDVIYE 237

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L        ++F +T++ V      L     +V  + G++  +ER   ++ +++   + 
Sbjct: 238 LLTIGQPYLVMIFANTKSKVDELADGLKSRGIKVAKIHGDIPPRERKRVMKQVQNLEYQF 297

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+AE+  +    +HR GRTGR   KG ++ +   + +    
Sbjct: 298 VVATDLAARGIDIEGVSHVINAEIPRDLSFFIHRVGRTGRNNLKGTAITLYAPSDENLII 357

Query: 358 RLFREANVSVVWEPAPSVEAIRERD-AQRILQDPLFLDSIQGDEKKMV 404
            + +   +    +     E +   D  +R  ++    D I    K M+
Sbjct: 358 DIEK-LGIPFEPKMIQKGEIVDTYDRKRRTTRENTATDKIDPKLKSMI 404


>gi|324021225|gb|EGB90444.1| DEAD/DEAH box helicase [Escherichia coli MS 117-3]
          Length = 432

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 189/363 (52%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSILPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|312873712|ref|ZP_07733757.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2052A-d]
 gi|312875174|ref|ZP_07735187.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311089281|gb|EFQ47712.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2053A-b]
 gi|311090710|gb|EFQ49109.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2052A-d]
          Length = 460

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 202/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 10  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 69

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 70  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 124 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 184 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 304 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 363

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 364 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 423 AIQADRQQKKKI--EERIKARKQKRQRKRERDRLRED 457


>gi|254571881|ref|XP_002493050.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|238032848|emb|CAY70871.1| ATP-dependent RNA helicase of the DEAD box family [Pichia pastoris
           GS115]
 gi|328352938|emb|CCA39336.1| ATP-dependent RNA helicase [Pichia pastoris CBS 7435]
          Length = 544

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 140/402 (34%), Gaps = 22/402 (5%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            FE++       + +   L++  +   T +Q   +   L   D++  A TGSGKT+AF +
Sbjct: 114 SFEDLITRFQLDKKLLSNLADAKFTEPTPIQCESIPSTLHGHDIIACAPTGSGKTLAFLI 173

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L   L      F        L ++PT+ELA Q+  EL  L     +++ +    +S   
Sbjct: 174 PLVQKLGQNQKNF----GIRGLILSPTKELATQIHNELLKLTKGKNLIIGLLSKSLSGKL 229

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKG----LNISHLKAVVLDEADEMLDLGFRDDIEFI 172
               ++   + V+ +       +   G      + HL     D+      L   DD+   
Sbjct: 230 RSDLIKGNKYDVMVSTPLRLIEVVRMGKIDLREVKHLVLDEADKLFAPEFLEQTDDVLHN 289

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             +   +  +   +          +   +   + +                         
Sbjct: 290 CSNPKLQMSIYSATIPEEVEELAHSVMKEPIRINIGRKEAANTQIKQKVVYTGSEEGKLV 349

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                +         ++F  +          L      V  +  E +Q +R   ++  + 
Sbjct: 350 ALRQMVQNSEFKPPVLIFLQSITRAKALFHELIYDKMNVDVIHSERTQIQRDRVVERFQK 409

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V I T+V  RGID   + LVI+ ++ ++ E  +HR GRTGRAG  G +V    +  
Sbjct: 410 GDIWVLICTEVIGRGIDFKGINLVINYDVPTSAEAYVHRIGRTGRAGHTGSAVTFFTKED 469

Query: 353 QRRAERLFREANVS------VVWEPAPSVEAIRERDAQRILQ 388
               + +      S        W    + + + E++  +I +
Sbjct: 470 SLAIKPIINVLKQSEQNNGYASWME--TEDKLSEKELTKIKK 509


>gi|221108888|ref|XP_002166443.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 789

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 120/383 (31%), Positives = 194/383 (50%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
            ++P  I + +   GY + T +Q   +   L  +D++  A+TGSGKT AF + L   +  
Sbjct: 366 SSLPNDILDVILSLGYTDPTPIQRQAIPIGLMNRDIIGIAETGSGKTAAFVIPLLVWITG 425

Query: 63  LAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L E+DR S + + P A+ +APTRELA Q+  E      K G+     IGG+S   +   L
Sbjct: 426 LPESDRQSVSDNGPFAIILAPTRELAQQIEEETIKFAKKLGIRTVAVIGGLSREDQGFQL 485

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L +S    VV+DEAD M+D+GF  D++ IL+  P    
Sbjct: 486 RLGCEIVIATPGRLIDVLENRYLVLSQCSYVVMDEADRMIDMGFEPDVQKILEHLPVTNI 545

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ P +  LA+ Y +    V I S  +  
Sbjct: 546 KPDTEEAEDVNVIAKNYSSKDKYRQTVMFTATMPPVVERLARTYLRRPAIVTIGSAGKPV 605

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++ +  +++ + +   ++ IL        +VF + +       K L +  F    L G
Sbjct: 606 DRVEQKVYMLSAAQKKKKLLEILSNKLDPPVLVFVNQKKGADVLAKSLEKQGFSATTLHG 665

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  +++G   + +ATDVA RGID+ D+ +VI+ +++ N E+  HR GRTG
Sbjct: 666 GKGQEQREFALNSLKEGNKDILVATDVAGRGIDIKDVSMVINYDMAKNIESYTHRIGRTG 725

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G++V  + Q        L
Sbjct: 726 RAGKSGIAVTFLTQEDSEVFYDL 748


>gi|196002119|ref|XP_002110927.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
 gi|190586878|gb|EDV26931.1| hypothetical protein TRIADDRAFT_21982 [Trichoplax adhaerens]
          Length = 435

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 115/420 (27%), Positives = 193/420 (45%), Gaps = 35/420 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +     G    T+VQE  + P L+ ++ +  A+TGSGKT AF L +   L  E 
Sbjct: 12  LNTWLVKQCRAIGLAKATAVQEKCIPPILQGQNCIGCAKTGSGKTAAFALPILQNLAKEP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA Q+  +        G+  A+ IGG+ +  +   L    H
Sbjct: 72  ------FGIYALILTPTRELAFQLADQFRAFGKPIGMRDAIVIGGLDIISQSIALSKKPH 125

Query: 127 IVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           IV+ TPGRL D I     ++ S +K +VLDEAD +L+  F  D+  I +  P+ R+ L+F
Sbjct: 126 IVIATPGRLADLIDNDSKVHFSKIKFLVLDEADRLLEASFGPDLGKIFEILPEDRQTLLF 185

Query: 186 SATISPAI---TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN----- 237
           SAT++ A+     +A + +           +     +D   +L+    +D   V      
Sbjct: 186 SATMTNAMARAQEVAASKKPFIYEDTDMKISATVEQLDQHYLLMPAVVKDCYFVYLIKQL 245

Query: 238 -------ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                           +    S R S      +L+   F   AL   + Q++R  +L   
Sbjct: 246 SLELEKNPRWNMMIFTSTYNFSNRRSCQILAIMLSRLEFSCAALHSLMPQRQRLGSLARF 305

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
           ++G  ++ +ATDVA+RG+D+P +E V++  +  + ++ +HR GRT RAG+KGM+V ++ Q
Sbjct: 306 KNGLLKILVATDVASRGLDIPTVEAVVNYNVPLSADDYIHRVGRTARAGKKGMAVTLMTQ 365

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
               R   +    NV ++         + E D  ++L     L       +K +DV L +
Sbjct: 366 YDVNRIHNIETTTNVKLLKY------EVDEHDVLKLLNIVTML-------RKEIDVRLEE 412


>gi|142982528|sp|A2QAX7|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
 gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
          Length = 824

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 121/505 (23%), Positives = 209/505 (41%), Gaps = 46/505 (9%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + I   L+   + N T +Q   +   L  KD++ SA TGSGKT AF + +   LL  
Sbjct: 315 NLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFR 374

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +   +       + PTRELAVQ       L   T +     +GG S+  +   L+   
Sbjct: 375 PRKVPTSR---VAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRP 431

Query: 126 HIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK R+ ++
Sbjct: 432 DVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQTML 491

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILRY 241
           FSAT++  +  L +      VR+ + ++      +              R   ++ + + 
Sbjct: 492 FSATMTDTVDKLIRVGLNRPVRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLLYLCKE 551

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF   +    R   +      +   L G +SQ++     +  +       +AT
Sbjct: 552 IYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQSVENFREGKA---AFLLAT 608

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+A+RG+D+  +E VI+ E   + E  LHR GRT RAGR G +  +  +  ++  +   +
Sbjct: 609 DLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVK 668

Query: 362 EAN------VSVVWEPA----------PSVEAIRERDAQRILQDPLFLDSIQGD------ 399
                     S V EPA             + + E  ++  L+  L    +Q        
Sbjct: 669 AGKSQGAKIASRVIEPAVADSWAAKAEELADEVEEVLSEEKLEKQLAQAEMQVTKGENLI 728

Query: 400 ----------EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDD 449
                     ++   +    K    K+ A  L    AG+   E+      +S +D+ R D
Sbjct: 729 KHEAEIKSRPKRTWFETERDKKAARKLGAAELNGPDAGMSKKEKQK----LSNKDKKRLD 784

Query: 450 SRAFKVGGGSRDNFKGSSWFSLSVG 474
               +   G+      ++  S+  G
Sbjct: 785 DSRQRQEAGAGWKKGRATRESMKNG 809


>gi|281353511|gb|EFB29095.1| hypothetical protein PANDA_004711 [Ailuropoda melanoleuca]
          Length = 581

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 107/338 (31%), Positives = 175/338 (51%), Gaps = 4/338 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P+ + E + + G+   T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 246 FQRYPE-VMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLD 304

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTRELA+QV  E    Y+  G+      GG   + + +DL+ 
Sbjct: 305 SQPVIRGQRNGPGMLVLTPTRELALQVEAECSK-YSYKGLKSVCIYGGGDRNGQIQDLKK 363

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +VLDEAD+MLD+GF   I  IL      R+ +
Sbjct: 364 GVDIIIATPGRLNDLQMNNFVNLRSVTYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTI 423

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT   A+  LA++Y K+ + V + + +    S +    ++    ++ + I   L   
Sbjct: 424 MTSATWPYAVRRLAQSYLKEPMIVYVGTLDLMAVSTVKQNIIVTTEEEKCSHIQTFLESM 483

Query: 243 GAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
             K+  IVF S +A+    +  L      V +L G   Q +R  AL+  + G+ R+ IAT
Sbjct: 484 SPKDKVIVFVSRKATADHLSSDLILRHVSVESLHGNREQSDRERALENFKTGKVRILIAT 543

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           D+A+RG+D+ D+  V + +   N E  +HR GRTGRAG
Sbjct: 544 DLASRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAG 581


>gi|223590191|sp|A5DLF4|DBP4_PICGU RecName: Full=ATP-dependent RNA helicase DBP4
 gi|190347685|gb|EDK40007.2| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++P  +   + L E  +V+LT +Q+  +   L+ +DV+ +A+TGSGKT+AF + +
Sbjct: 45  ISQFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPV 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ EN   +      AL ++PTRELAVQ    L  +         +  GG  V  E+
Sbjct: 105 IEKLIREN--ITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEK 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++              G+  S+L+ +VLDEAD  LD+GFR  I+ IL   P 
Sbjct: 163 ERISRMNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPV 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
            R+ L+FSAT S  +  LA+    +  RV ++S+    S  +      + ++L+ + + +
Sbjct: 223 TRQTLLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVL 282

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + L+ H     +VF S+   V    +        +  L      ++ S           
Sbjct: 283 WSFLKSHLKSKILVFFSSSKQVQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRA 342

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR+G S+ ++ P   
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLAPSEE 402

Query: 353 QRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +   +RL   + ++ ++     + + I  +      QDP   +
Sbjct: 403 EGMVKRLEAHKISLKMMNIKQKNKKVISPQLQSLCFQDPELKN 445


>gi|146414812|ref|XP_001483376.1| hypothetical protein PGUG_04105 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 754

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 11/403 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+++P  +   + L E  +V+LT +Q+  +   L+ +DV+ +A+TGSGKT+AF + +
Sbjct: 45  ISQFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPV 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L+ EN   +      AL ++PTRELAVQ    L  +         +  GG  V  E+
Sbjct: 105 IEKLIREN--ITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDVKYEK 162

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++              G+  S+L+ +VLDEAD  LD+GFR  I+ IL   P 
Sbjct: 163 ERISRMNILIGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFRKQIDNILGHLPV 222

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
            R+ L+FSAT S  +  LA+    +  RV ++S+    S  +      + ++L+ + + +
Sbjct: 223 TRQTLLFSATQSDNVKDLARLSLVNPKRVGVSSDQEVSSIPESLEQYYIKISLASKMDVL 282

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + L+ H     +VF S+   V    +        +  L      ++ S           
Sbjct: 283 WSFLKSHLKSKILVFFSSSKQVQFAYEAFRRLQPGISLLKLYGRHKQTSRLETTMKFSRA 342

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNM 352
           +     ATD+ ARG+D P ++ V+  +   +    +HR GR  R GR+G S+ ++ P   
Sbjct: 343 QHACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRVGRAARFGRQGKSLLMLAPSEE 402

Query: 353 QRRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +   +RL   + ++ ++     + + I  +      QDP   +
Sbjct: 403 EGMVKRLEAHKISLKMMNIKQKNKKVISPQLQSLCFQDPELKN 445


>gi|328883512|emb|CCA56751.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 503

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 190/383 (49%), Gaps = 7/383 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++   + I   L+  G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 74  VESFADLALDRRILATLTAEGVSVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 133

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       + +    PLAL + PTRELA QV   L        + +A  +GG+ + R+ 
Sbjct: 134 LAR---TAGQLAEPRQPLALVLVPTRELAQQVTDALTPYARAVKLRLATVVGGMPIGRQA 190

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+NG  +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +L+    
Sbjct: 191 NALRNGVEVVVATPGRLKDLIDRGDCRLNQVAITVLDEADQMADMGFMPQVTALLNQVRP 250

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+    +  
Sbjct: 251 EGQRMLFSATLDRNVDLLVRRYLTDPVVHSVDPSQGAVTTMEHHVLHVHGADKQR--LTT 308

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 309 EIAARDGRVIMFLDTKHAVDRLTEDLLRCGVRAAALHGGKSQPQRTRTLARFKTGHVTVL 368

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 369 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTANQRRDMTR 428

Query: 359 LFREANVSVVWEPAPSVEAIRER 381
           L   A +        S E    R
Sbjct: 429 LMAAAGIVPETTQVRSGEEALRR 451


>gi|325913745|ref|ZP_08176106.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners UPII 60-B]
 gi|325476945|gb|EGC80096.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 202/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 10  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 69

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 70  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 124 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   D+ + +  +L  
Sbjct: 184 IGAFSATIPVKLEQFLNKYMQHPEFVVIDNPSVISPTVANDLIDVGSKDKKDILYTLLTM 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 304 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 363

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 364 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 423 AIQADRQQKKKI--EERIKARKQKRQRKRERDRLRED 457


>gi|229198412|ref|ZP_04325118.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
 gi|228585112|gb|EEK43224.1| ATP-dependent RNA helicase yqfR [Bacillus cereus m1293]
          Length = 439

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 104/367 (28%), Positives = 181/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + +   
Sbjct: 13  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINPG 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 73  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 127 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 187 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVKRMLLQ 246

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 247 FKPYLAVVFTNTKKMADQVADGLTERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ EL S+ +  +HR GRT RAG  G++V +     +   + L +
Sbjct: 307 DLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGYSGIAVTIYDPANEEALDSLEK 366

Query: 362 EANVSVV 368
           + ++   
Sbjct: 367 QRHIEFK 373


>gi|332141363|ref|YP_004427101.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551385|gb|AEA98103.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 441

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 109/378 (28%), Positives = 182/378 (48%), Gaps = 7/378 (1%)

Query: 5   ENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
            ++P    I   L  +    LT +QE  + P ++ KD++ S++TGSGKT AF +   + L
Sbjct: 4   SDLPVHHKIISKLESKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRL 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +A+  +      P AL +APTRELA QV  E + +     +  ++ +GG + + + + L+
Sbjct: 64  MAQ--KALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALR 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VGT GR+ DH+  K + ++ L+ ++ DEAD MLDLGF   ++ I D +  ++R 
Sbjct: 122 RNPHIIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQ 181

Query: 183 LMFSATISPAITTLAKNYQKDA---VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            M  +     I       Q            S                + ++D  +   L
Sbjct: 182 TMLFSATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFEL 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  AIVF +TR    R   +L E   + +AL G++ Q +R+  +     G+  + +
Sbjct: 242 ANRTYNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+A+RG+DL  + LV++ +L  N +  +HR GRTGRAG+KG +  +I        E L
Sbjct: 302 TTDLASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGL 361

Query: 360 FREANVSVVWEPAPSVEA 377
                 ++   P     A
Sbjct: 362 KNHLQYALECSPHDEFSA 379


>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 526

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 123/382 (32%), Positives = 185/382 (48%), Gaps = 16/382 (4%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  AL   G     ++QE  L   L   D++  A+TG GKT  FG+ L  
Sbjct: 29  TFAELGVDAAIVAALEADGKTRTFAIQELTLPLALGGSDLIGQARTGMGKTYGFGVPLLH 88

Query: 61  TLLAENDRFSPA--SAPLALAIAPTRELAVQVGRELE----------WLYAKTGVVVAVC 108
            L+           + P AL I PTREL VQV  +LE                 + +   
Sbjct: 89  RLVNAESTGLRGLDNTPRALIIVPTRELCVQVTEDLEVAAKGVDVTLTDGTVRPLKITSI 148

Query: 109 IGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD 168
            GG    ++  +LQ G  +VVGTPGRL D  +   L +  +  +VLDEADEMLDLGF  D
Sbjct: 149 YGGRPYEQQIEELQTGVDVVVGTPGRLLDLAQQGHLVLGKVGVLVLDEADEMLDLGFLPD 208

Query: 169 IEFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           IE I+ + P  R+ ++FSAT+   I T       +   +R   A+++  H          
Sbjct: 209 IERIMGALPTDRQTMLFSATMPGPIVTLARTFLNRPTHIRAEHANDSAVHERTTQYVYRA 268

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
              D+   +  +L+  G    ++F  T+ +  +    LAE  F V A+ G+L Q  R  A
Sbjct: 269 HAMDKAELVARVLQSEGRGATMIFTRTKRTAQKVADDLAERGFSVGAVHGDLGQVAREKA 328

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   R+G+  V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G+++ 
Sbjct: 329 LNKFREGKIDVLVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGRTGIAIT 388

Query: 347 VIPQNMQRRAERLFREANVSVV 368
           ++  +   R E + +   + + 
Sbjct: 389 LVDWDELHRWELIDKALGLDMA 410


>gi|171685013|ref|XP_001907448.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942467|emb|CAP68119.1| unnamed protein product [Podospora anserina S mat+]
          Length = 604

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 104/400 (26%), Positives = 170/400 (42%), Gaps = 34/400 (8%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +   +   +   GY   T +Q   L       DV+  AQTGSGKT A+ + + +
Sbjct: 139 SFETAGLHPAMLNNVKLAGYETPTPIQRYCLPAIKMGYDVVAVAQTGSGKTAAYLIPILN 198

Query: 61  TLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTGVV 104
            L+ +  + +                    PL + + P+RELAVQV  E      +T + 
Sbjct: 199 QLMGKAKKLAATRPNPAAFREGVDQAVRAEPLVVIVCPSRELAVQVFTEARKFCYRTMLR 258

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI-SHLKAVVLDEADEMLDL 163
             V  GG     +R  LQ G  +++ +PGRL D +    L     ++ +VLDEADEML  
Sbjct: 259 PCVIYGGGPSSEQRAQLQKGCDVLIASPGRLIDFMDDTRLLTLRRVRYMVLDEADEMLHD 318

Query: 164 GFRDDIEFIL--------DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
            ++ D + I+              R ML  +            +  +  VR+ +      
Sbjct: 319 DWKGDFDTIMSGGGELLPIQRGNVRYMLFSATFPKQFRDLAKNHLAETHVRLRVGRAGST 378

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           H +I       A  ++ +A++++L        I+F +++ +       L    F   ++ 
Sbjct: 379 HRNIKQVVYETAPFNKKSALIDLLESLPPTRTIIFVNSKRTADELDDFLYNLKFPCTSMH 438

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHR 331
            + +Q+ER  AL+  R G A + I T V ARGID+ ++  VI+ +L S      E   HR
Sbjct: 439 ADRTQKEREAALRGFRSGLAPILITTGVTARGIDVRNVMHVINYDLPSMDYGGIEEYTHR 498

Query: 332 SGRTGRAGRKGMSVFVIPQNMQRRAERLFR---EANVSVV 368
            GRTGR G +GM+     +  +  A  L R   E    + 
Sbjct: 499 IGRTGRIGHRGMASSFFTERDEPIASVLTRTLLETGQEIP 538


>gi|82751161|ref|YP_416902.1| ATP-dependent RNA helicase [Staphylococcus aureus RF122]
 gi|82656692|emb|CAI81119.1| probable ATP-dependent RNA helicase [Staphylococcus aureus RF122]
          Length = 448

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 207/449 (46%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L++ +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKKTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEVQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|224076698|ref|XP_002199492.1| PREDICTED: ATP-dependent RNA helicase ROK1 [Taeniopygia guttata]
          Length = 602

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 150/384 (39%), Gaps = 22/384 (5%)

Query: 3   IFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
            FE +         I E +   G+   T++Q   +   L  +++L SA TGSGKT+AF +
Sbjct: 155 TFEQLQQEYKVHPKIMENIHAAGFHVPTAIQMQAIPVMLHGRELLASAPTGSGKTLAFCI 214

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L + L    ++        AL I+PTRELA Q  REL  L   TG  + +        +
Sbjct: 215 PLLTHLKQPRNK-----GFRALIISPTRELASQTHRELVKLAEGTGFRIHMIHKAAEAAK 269

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEML--------DLGFRDD 168
           +     +    ++ T      ++  +      L +V     DE              +  
Sbjct: 270 KFGPKSSKKFDILVTTPNRLIYLLKEDPPAIDLSSVEWLVVDESDKLFEDGKSGFREQLG 329

Query: 169 IEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
             F+  +S   RR L  +            N     +    A  +   +       + + 
Sbjct: 330 TIFLACTSHLARRALFSATFAHDVEEWCKLNLDNVVLVSVGARNSAAETVEQELLFVGSE 389

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           + +  A+  +++   A   +VF  +          L      V  +  + +QQ+R   +Q
Sbjct: 390 TGKLTAMRELVKKGFAPPVLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDRVVQ 449

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R G+  V I + + ARG+D   + +VI+ +L ++    +HR GRTGRAG +G +V   
Sbjct: 450 SFRAGKIWVLICSALLARGMDFKGVNMVINYDLPTSAVEYIHRIGRTGRAGHRGKAVTFF 509

Query: 349 PQNMQ---RRAERLFREANVSVVW 369
            ++ +   R    + + A   V  
Sbjct: 510 TEDDKPLLRSIANVIQRAGCPVPE 533


>gi|110802751|ref|YP_698816.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens SM101]
 gi|110683252|gb|ABG86622.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens SM101]
          Length = 405

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L  K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 9   LSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 69  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D++ ++ S P+  + L+
Sbjct: 123 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLI 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 183 FSATMNEKALENADELIGTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 243 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 303 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 362

Query: 364 NVSVVW 369
            + +  
Sbjct: 363 KIKIPR 368


>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
 gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
          Length = 573

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 109/397 (27%), Positives = 184/397 (46%), Gaps = 17/397 (4%)

Query: 1   MKIFENIP-QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +   E++P Q   +    + +   T VQ       L   D+L  ++TGSGKT++F L   
Sbjct: 139 IDTIESVPFQSTIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAI 198

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +LA+  R S    P  L +APTRELA Q+ +E E       + +A   GG     ++ 
Sbjct: 199 EHILAQ-PRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQL 257

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVVGTPGR+ D +    L++ ++  +V+DEAD ++++GF   I+ I +S    
Sbjct: 258 QLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPD 317

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIVNI 238
           R++L +SAT    +++ A+ + +  +R+ I S     + +I  +  +V         +  
Sbjct: 318 RQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMD 377

Query: 239 -----LRYHGAKNAIVFCSTRA--SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
                         ++F  T+      +          ++  L G++ Q  R   +Q  +
Sbjct: 378 TLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFK 437

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + R  + +ATDVA+RG+D+  +  VI+  L S+ E  +HR GRTGRAG  G S  ++  N
Sbjct: 438 NKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNN 497

Query: 352 MQRRAE------RLFREANVSVVWEPAPSVEAIRERD 382
                E       L + +   V  E    + AIR R 
Sbjct: 498 SLDDMELVGDLTNLLQRSEQEVPSEFL-DINAIRNRQ 533


>gi|17509811|ref|NP_490989.1| hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
 gi|7331768|gb|AAF60456.1| Hypothetical protein Y23H5B.6 [Caenorhabditis elegans]
          Length = 732

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 195/442 (44%), Gaps = 17/442 (3%)

Query: 4   FENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+ P      E L +  Y   T +Q   +   L   DV+ +A+TGSGKT+A  + +   
Sbjct: 78  FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++SP     AL I+PTRELA+Q    +  + A  G    + IGG  V  ER  +
Sbjct: 138 LW--RAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRI 195

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IV      L        ++   L+ +VLDEAD MLD+GF   +  I+++ P +R+
Sbjct: 196 SGINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQ 255

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT +  +  L +    D V V++          ++    V+V    + NA+ + +
Sbjct: 256 TLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFI 315

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRARV 297
             H  K ++VF S+       T+  ++    +  +   G ++Q++R        + +A V
Sbjct: 316 EAHRKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAAV 375

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRA 356
            IATDVA+RG+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++ P   +   
Sbjct: 376 LIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAMI 435

Query: 357 ERLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK---- 410
            +L + + + +        ++  +R +    + +     +  Q      +  +       
Sbjct: 436 GKLEKHS-IPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKK 494

Query: 411 -HDPEKIAAGFLRIHRAGLCAP 431
             D E I A  L      +  P
Sbjct: 495 VFDVEAIDAAALADSFGLVSVP 516


>gi|332528278|ref|ZP_08404283.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332042298|gb|EGI78619.1| DEAD/DEAH box helicase domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 570

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 125/419 (29%), Positives = 186/419 (44%), Gaps = 49/419 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKD--------VLVSAQTGSGKTVAFGLAL 58
           +   + +A+++ GY   T+VQ+ ++   L   D        ++VS+QTGSGKT AF L +
Sbjct: 36  LAPELIQAVADLGYTQPTAVQQRVIPLALPTHDPSHHGYNDLMVSSQTGSGKTAAFLLPV 95

Query: 59  ASTLLAE------------------------------------NDRFSPASAPLALAIAP 82
             TL+ +                                    N R   A+ P AL + P
Sbjct: 96  LHTLIQQQADAANREREEYERACADAAAKGEPAPKRHKRKDPTNPRNFKAAVPGALVLCP 155

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGK 142
           TRELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R  
Sbjct: 156 TRELAQQVAHDAIELVKHCRGLRIANVVGGMPYQLQIAKLQNAGLVVATPGRLLDLQRSM 215

Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
            + +  ++ +V+DEAD MLDLGF DD+  I   +  +R+ +MFSAT +P I  LA     
Sbjct: 216 QIKLDQVQFLVVDEADRMLDLGFTDDLAEINALTANRRQTMMFSATFAPRIQQLAMRVMH 275

Query: 203 DA-----VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
           D           A   +  +           + +   + + LR      AIVF ST+   
Sbjct: 276 DNGSQVKKVQIDAPHEKHANIKQVLHWADNFAHKRALLDHWLRDANIDQAIVFASTQVEC 335

Query: 258 SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI 317
                 L +  F  VAL G LSQ  R+  L  +R G+ +  +ATDVAARGID+P +  V 
Sbjct: 336 DGLAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVKFLVATDVAARGIDVPTITHVF 395

Query: 318 HAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           +  L    E+  HR GRTGRAGR G++V +     +R+   +          E  P +E
Sbjct: 396 NFGLPMKAEDYTHRIGRTGRAGRDGIAVTIAEFRDRRKIGDIEFYTKQPFKAEAIPGLE 454


>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
 gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
          Length = 854

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 185/441 (41%), Gaps = 24/441 (5%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + +++RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L     R 
Sbjct: 49  ELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKL----QRR 104

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
            P     AL ++PTRELAVQ  + ++ L     +   + +GG S+  +   +     ++V
Sbjct: 105 DPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVIV 164

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L ++ +  VV DEAD + ++GF + +   L   P  R+M+MFSAT+
Sbjct: 165 ATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQMVMFSATL 224

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NA 247
              +   A+    D V + +  E++    +  + +     DR  A+V +L+Y   K    
Sbjct: 225 PKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHCRPDDRYTALVVLLKYVIPKESQT 284

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+  V   + +L E      ++   L    R        + +  V I TDVAARG
Sbjct: 285 VVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARG 344

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ V++      P+  +HR GR  RAGR G +  +   +       L    N   
Sbjct: 345 IDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNRPF 404

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                              + D   + +I  D  +   + + +       AG LR     
Sbjct: 405 N------------------IHDSSTMGTIPQDLLEEEHLSVNEIKKSHHIAGVLRTSENA 446

Query: 428 LCAPEEITPVSLVSGRDRFRD 448
                   PV+      R + 
Sbjct: 447 YKKYLSSRPVASTDANARVKK 467


>gi|319400894|gb|EFV89113.1| DEAD/DEAH box helicase family protein [Staphylococcus epidermidis
           FRI909]
          Length = 448

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 200/424 (47%), Gaps = 17/424 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + EA+    +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + ++         P A+ +APTRELA Q+ +    L     G+ V + IGG  + ++++ 
Sbjct: 66  IKSDIQE------PQAIVVAPTRELAQQLYQVAMHLVKFKKGIKVKLFIGGTDLEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   +++GTP R+ D      L+      +++DEAD M+DLG  +D++ I      + 
Sbjct: 120 CSHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDEN 179

Query: 181 RM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               +FSATI  ++      Y      V +  +     +I++  +    S + +  + ++
Sbjct: 180 AHLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC++R +       L +   ++  + G L+ +ER   ++ +R+   +  I
Sbjct: 240 DILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     +
Sbjct: 300 ASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLI 359

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHD 412
                +  NV +       ++A   R +++   D L  +    ++   K+ V     K  
Sbjct: 360 EDRGYKFKNVDIKNGELKPIKAHNMRRSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKF 419

Query: 413 PEKI 416
            +++
Sbjct: 420 KQEV 423


>gi|302660003|ref|XP_003021686.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
 gi|291185595|gb|EFE41068.1| hypothetical protein TRV_04197 [Trichophyton verrucosum HKI 0517]
          Length = 813

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 106/411 (25%), Positives = 185/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 375 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 434

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 435 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 494

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 495 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 554

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 555 EKPDTEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 614

Query: 216 --HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
               +     V      +      +         IVF + + +     + +    F  V 
Sbjct: 615 VDTVEQRVEFVAGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 674

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 675 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 734

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 735 RTGRAGKSGVAITFLGSEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 785


>gi|221132610|ref|XP_002156165.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 620

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 111/423 (26%), Positives = 208/423 (49%), Gaps = 10/423 (2%)

Query: 1   MKIFENI-PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            K  E +  +   + + + G+  +T +Q   + P L  +D+L +A+TGSGKT+AF +   
Sbjct: 131 FKSLEGLVCEKTLKGVFDMGFTQMTEIQYKTVMPLLNGRDLLGAAKTGSGKTLAFLIPTI 190

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N  F P +   A+ I+PTREL++Q    L  L         + +GG +  +E  
Sbjct: 191 ELLYKLN--FMPRNGTGAIIISPTRELSLQTFGVLRDLLQHHQQTFGIVMGGANRKQEAE 248

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            LQ G +I+V TPGRL DH++        +L+ +++DEAD +L++GF ++++ I+   PK
Sbjct: 249 RLQRGVNILVATPGRLLDHLQNTPGFVFKNLQCLIIDEADRILEIGFEEEMKQIIKILPK 308

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAI 235
           KR+ L+FSAT +  +  LA+   K A       ++++ S ++      ++V    R   +
Sbjct: 309 KRQTLLFSATQTRKVEDLARVSLKKAPLYVGVDDDKEVSTVEGLEQGYIVVPSEKRFLLL 368

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
              L+ +  K  +VF S+  SV   +++L      V+ + G+  QQ+R++         +
Sbjct: 369 FTFLKKNMKKKVMVFFSSCHSVKFHSELLNYIDIPVMDIHGKQKQQKRTSTFFEFCTAES 428

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNMQR 354
            + + TDVAARG+D+P+++ ++  +   +P+  +HR GRT R  + +G ++  +      
Sbjct: 429 GILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGSQGRGHALLFLLPEELG 488

Query: 355 RAERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
              R  + A V +        +    +   ++++    FL+    D  +      A H  
Sbjct: 489 FL-RYLKHAKVPLNEYDFSKAKISNIQSQLEKLISKNYFLNKSAKDGYRSYLQAYASHQH 547

Query: 414 EKI 416
             I
Sbjct: 548 RNI 550


>gi|213402959|ref|XP_002172252.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000299|gb|EEB05959.1| ATP-dependent RNA helicase rok1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 519

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 101/425 (23%), Positives = 183/425 (43%), Gaps = 17/425 (4%)

Query: 5   ENIPQVI-GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           ++ P+ +  + L E+G+   + +Q+  +    + +DVL  A TGSGKTVA+   +  +L 
Sbjct: 81  KDFPECLFTQNLHEQGFKQASPIQQYAIPAIEQRRDVLACAPTGSGKTVAYLYPIVRSLQ 140

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           A  D         A+ + PTRELA QV R+L+ L A+T +            +E+     
Sbjct: 141 AHKDG-----GFRAVIVLPTRELAEQVNRQLKRLIARTDLKAIFYDKSNEKIQEKNTKLR 195

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FILDSSPKKRRM 182
             + +  +      H    GL++++++ +VLDEAD + +  F +  +  +   +  +   
Sbjct: 196 EIYDICVSTPMRLVHAIKSGLSLANVEFLVLDEADRLFEKNFVEQTDGVLSACTHPRICK 255

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSAT+   +  LAK    D +R+ +  ++   S I+ + + V        I   +   
Sbjct: 256 CLFSATLPSTVEELAKTVAHDPLRIIVGQKDAATSTIEQKLLFVGNEASKLVIFRQMVSD 315

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F             L      V A+ GEL Q +R   +   R G   V IA
Sbjct: 316 GEIQPRVVIFVQDIDRAKALYTELMFDGIHVAAIHGELPQMKRDEVMARFRKGEVWVLIA 375

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER-- 358
           TD+ ARGID   ++LVI+ +   +  + +HR GRTGRAG  G ++    +      +   
Sbjct: 376 TDLLARGIDFNGVKLVINYDFPQSVHSYIHRIGRTGRAGHGGRAITFYTKEDSEYLKLVA 435

Query: 359 -LFREANVSVVW----EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            + + +   V       P P+ + ++++                 D  K V    A    
Sbjct: 436 GVMKSSGCEVPEWIMALPKPT-KQLKKKLKYHAPDRKRITTRSSYDRHKEVRKKEAIQQA 494

Query: 414 EKIAA 418
           +K+A+
Sbjct: 495 KKLAS 499


>gi|170731293|ref|YP_001776726.1| ATP-dependent RNA helicase RhlB [Xylella fastidiosa M12]
 gi|167966086|gb|ACA13096.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
          Length = 544

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L   D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 16  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVVNRLLSR 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ G
Sbjct: 76  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 136 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 IVF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 SEGMRTIVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 316 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVV 368
                + 
Sbjct: 376 YIEQKIP 382


>gi|300971643|ref|ZP_07171516.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|301046191|ref|ZP_07193365.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300301848|gb|EFJ58233.1| DEAD/DEAH box helicase [Escherichia coli MS 185-1]
 gi|300411129|gb|EFJ94667.1| DEAD/DEAH box helicase [Escherichia coli MS 45-1]
 gi|315295345|gb|EFU54675.1| DEAD/DEAH box helicase [Escherichia coli MS 153-1]
          Length = 432

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 190/363 (52%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L    +   +    GG     +R  LQ+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|268572017|ref|XP_002641212.1| Hypothetical protein CBG09074 [Caenorhabditis briggsae]
          Length = 732

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 178/411 (43%), Gaps = 31/411 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---ST 61
              P  +  A+ E GY+  T +Q   +   L+ +DV+  A+TGSGKT AF L L    ++
Sbjct: 308 SGFPDEVYRAVQEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITS 367

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +      P A+ +APTRELA Q+  E        G+     IGG S   +   L
Sbjct: 368 LPKIERQEHSDQGPYAIILAPTRELATQIEEETNKFGKLLGIRTVSVIGGASREEQGMKL 427

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +V+ TPGRL D +  + L ++    V+LDEAD MLD+GF  D++ IL+  P    
Sbjct: 428 RMGVEVVIATPGRLMDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKILEYLPASNM 487

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR-------------------------QH 216
                   +          +    +  + +                              
Sbjct: 488 KKDTDEFDNEEALMKGFETRDKYRQTVMFTATMSPAIERLARQYLRRPAVVHIGNAGKPT 547

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++    ++    +   ++ ++  H     IVF + +       K LA+   +   L G
Sbjct: 548 ERVEQVVYMITKDRKPKKLLEVISQHDKYPIIVFVNRKHGADSLAKGLAKVGKKTSVLHG 607

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q  R  AL+ ++D   ++ +ATDVA RGID+ D+ LVI+ +++   E+  HR GRTG
Sbjct: 608 GKGQDAREYALKALKDQETKILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTG 667

Query: 337 RAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           RAG+ G ++  +  +        ++   E+ +S       + EA R +  Q
Sbjct: 668 RAGKHGKAITFLTADDTAVYYDLKQCLLESPISSCPPELANHEAARAKPGQ 718


>gi|294337058|emb|CAX65669.1| vasa-like protein [Isodiametra pulchra pulchra]
          Length = 574

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 101/373 (27%), Positives = 168/373 (45%), Gaps = 12/373 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+   + +     +   GY   T +Q+  +    + +D++  AQTGSGKT AF L +
Sbjct: 116 ITSFDEAQLTETFRRNVQRSGYNKPTPIQKYAIPAVRQGRDIMACAQTGSGKTAAFLLPV 175

Query: 59  ASTLLAEND---RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
            + ++ EN     +     P A+ IAPTRELAVQ+ RE + L   + +   V  GGVSV 
Sbjct: 176 IAGIMEENRPASEYDSVQEPSAVIIAPTRELAVQIDREAKKLIHGSILKSVVIYGGVSVA 235

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
                +  G +I+V TPGRL   I    +++   K +VLDEAD ML+ GF  ++      
Sbjct: 236 HHASQVARGCNILVATPGRLKGFIEMGKISLKKAKFLVLDEADRMLEEGFEAEVRRAASM 295

Query: 176 SPKKRRML------MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
            P             F   +     TL            + + N   + + +        
Sbjct: 296 MPPNTLRQTLLFSATFPTEVQDLARTLLNEDYLFITVGELGAGNADVTHLIFNVPHTEKI 355

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +   + +       + +IVF   +         L +  +Q  ++ G+  Q+ER  AL+ 
Sbjct: 356 GKLKELFSSRIDTSRQKSIVFVEMKKRCDFLAVQLCQAGYQSTSIHGDREQREREEALRQ 415

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI- 348
            + G+  + +AT VAARG+D+P +  V++ ++    E   HR GRTGR G KG ++ ++ 
Sbjct: 416 FKSGQCNILVATAVAARGLDIPKVMFVVNFDMPKTIEEFTHRCGRTGRVGFKGDAITLLD 475

Query: 349 PQNMQRRAERLFR 361
           P N       L +
Sbjct: 476 PTNDYEIMRSLVK 488


>gi|296392647|ref|YP_003657531.1| DEAD/DEAH box helicase domain-containing protein [Segniliparus
           rotundus DSM 44985]
 gi|296179794|gb|ADG96700.1| DEAD/DEAH box helicase domain protein [Segniliparus rotundus DSM
           44985]
          Length = 495

 Score =  167 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 175/379 (46%), Gaps = 14/379 (3%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F  +     I  +L+  G  N  ++QE  L   L   D++  A+TG GKT+AFG+ L  
Sbjct: 9   SFAELGVHPEIVASLAAAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGIPLLQ 68

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSV 114
            +       +    P AL + PTREL +QV  +L     +          +    GG   
Sbjct: 69  RV----AEAAAEDIPRALVVVPTRELCLQVTNDLVDACKQLKLSDGRPTRIVSLYGGRPY 124

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+ G  +VVGTPGRL D      L ++ ++ +VLDEADEMLDLGF  D+E I+ 
Sbjct: 125 EGQIATLEKGVDVVVGTPGRLLDLWGRGNLKLNAIRMLVLDEADEMLDLGFLPDVEKIMA 184

Query: 175 SSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
             P  ++ ++FSATI   + T       Q   +R         H             ++D
Sbjct: 185 KLPTGKQTMLFSATIPGPVLTLARTFMTQPTHIRAESHDTAAVHERTTQHVYRAHALNKD 244

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             +   L+  G    ++F  T+ S  +    L E  F   +L G++SQ  R  AL   R 
Sbjct: 245 ELVSRFLQAEGRGTTMIFTRTKRSAGKLADELVERGFSAGSLHGDMSQGAREEALSGFRK 304

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  + + TDVAARGID+  +  VI+     + +  +HR GRTGRAGR G+++ ++    
Sbjct: 305 GKIEILVCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGIAITLVDWED 364

Query: 353 QRRAERLFREANVSVVWEP 371
             R E +     ++    P
Sbjct: 365 LPRWEHINTALGLNHAEPP 383


>gi|332023103|gb|EGI63364.1| Putative ATP-dependent RNA helicase DDX23 [Acromyrmex echinatior]
          Length = 789

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF + L   +  
Sbjct: 366 SGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITS 425

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 426 LPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRL 485

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 486 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 545

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 546 KPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPT 605

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       + L +  +    L G
Sbjct: 606 ERTEQIVHIMGEADKRKKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHG 665

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 666 GKGQEQREYALASLKSGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 725

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RAG+ G+++    ++       LF +   +++  P 
Sbjct: 726 RAGKAGLAISFCTKDDSH----LFYDLKQTILASPI 757


>gi|264679533|ref|YP_003279440.1| hypothetical protein CtCNB1_3398 [Comamonas testosteroni CNB-2]
 gi|262210046|gb|ACY34144.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 431

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 181/382 (47%), Gaps = 12/382 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+ 
Sbjct: 8   LRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQK 67

Query: 67  DRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
              +    PLA L + PTRELA+QV   L  +  +        V  GGVS++ +   L+ 
Sbjct: 68  RSHTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINPQMMQLRG 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            A  +V TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L
Sbjct: 128 SADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALLPGKRQTL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDR----DNA 234
           +FSAT    +  LA     D VRV +        +    +I  RA+ V    R     + 
Sbjct: 188 LFSATFPQNVEALATRLLHDPVRVQVDADQAAEHSASPENISQRAIAVDGPRRTQLLRHL 247

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +         + A+VF + R +       L +         G++SQ  R + L   +  R
Sbjct: 248 VKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVLDQFKAKR 307

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ I TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++  +      
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPADTA 367

Query: 355 RAERLFREANVSVVWEPAPSVE 376
             + + +   + +  E     E
Sbjct: 368 HWKLICKRNQLEIDLEQIQGFE 389


>gi|218198307|gb|EEC80734.1| hypothetical protein OsI_23209 [Oryza sativa Indica Group]
          Length = 921

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 17/404 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++  +  + +   GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF L     +  L
Sbjct: 459 SLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKL 518

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDL 121
              DR         + + PTRELA Q   E   L      +    V  G      ++R  
Sbjct: 519 PPIDRDQKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMH 578

Query: 122 QNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            N   I+V TPGRL DH+         +  +K ++LDEAD +LD+GFR DIE I+ + PK
Sbjct: 579 TNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPK 638

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDR 231
           +R+ L+FSAT+   +  +     K  +      E            +          S  
Sbjct: 639 QRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSIL 698

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + + +  +     IVFC+T    S   ++L+E    V  +     Q  R+   +  +
Sbjct: 699 YGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFK 758

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  + +++DV+ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++   
Sbjct: 759 ESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPW 818

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +     +    ++ +     P ++   +R  ++ L      D 
Sbjct: 819 EEYFLRSI---KDLPITEATLPLIDLDTKRKVEKALAHVEVKDK 859


>gi|118088913|ref|XP_426195.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 445

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 4/339 (1%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +FE  P  I   + + G+   T +Q       L+  D++  AQTG+GKT+A+ +     L
Sbjct: 109 VFEQYPD-IMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHL 167

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            ++         P  L +APTRELA+QV  E    Y   G       GG     +   + 
Sbjct: 168 ASQPIPKDKRGGPGMLVLAPTRELALQVEAEC-LKYTYKGFKSICIYGGGDRKAQINVVT 226

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL D      +N+  +  +VLDEAD MLD+GF   I  IL      R+ 
Sbjct: 227 KGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQT 286

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +M SAT    +  LAK+Y ++ + V + + +    + ++ + +++   ++   + N +  
Sbjct: 287 VMMSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNTVEQKVIVINEEEKKAFMENFIDS 346

Query: 242 HGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
              K+ AI+F   +++       L      V +L G+  Q +R  AL   + G+ R+ +A
Sbjct: 347 MKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVA 406

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           TD+A+RG+D+ D+  V + +   N E  +HR GRTGRAG
Sbjct: 407 TDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAG 445


>gi|327296165|ref|XP_003232777.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
 gi|326465088|gb|EGD90541.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Trichophyton
           rubrum CBS 118892]
          Length = 811

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 108/411 (26%), Positives = 190/411 (46%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ + E +   GY + + +Q   +   L+ +D++  A TGSGKT AF L L   + +
Sbjct: 373 SGLPKRLLEIIDSVGYKDPSPIQRVSIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYISS 432

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E     A     V   +GG S+  +  +
Sbjct: 433 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAMKFAAPLNFNVVSIVGGHSLEEQAYN 492

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 493 LRNGAEIIIATPGRLVDCIERRILVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 552

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
                    +    +     +    +  + +                             
Sbjct: 553 EKPDSEEAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 612

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   V+  D+    +  +          IVF + + +     + +    F  V 
Sbjct: 613 VDTVEQRVEFVSGEDKRKKRLAEILTSREYRPPIIVFVNIKRNCDAVARDIKHMGFSAVT 672

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 673 LHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 732

Query: 334 RTGRAGRKGMSVFVI---PQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +     ++    +++  ++++S V E     EA + +
Sbjct: 733 RTGRAGKSGIAITFLGSEDNDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 783


>gi|325188903|emb|CCA23433.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 684

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 196/418 (46%), Gaps = 11/418 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L + G  +L  VQ    +  ++  D++  ++TGSGKT+AFGL +   LL   
Sbjct: 88  LSDTLFSNLKKAGITDLFPVQVQSFSTMMKGVDLVGRSKTGSGKTLAFGLPIIEKLL--- 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R      P AL + PTRELA QV  EL  L  +        +GGV  H +   ++ G  
Sbjct: 145 SRSGSRRNPGALILLPTRELATQVSSELSRLSPQL--KTVTIVGGVPYHSQESRIRAGVD 202

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVVGTPGR+ D    K L+   ++  VLDEAD ML  GF++ +E IL   P+ R+ +M+S
Sbjct: 203 IVVGTPGRIMDLFEKKTLSFEDVQFTVLDEADMMLKFGFQEAVETILSWVPETRQCVMWS 262

Query: 187 ATISPAITTLAKNYQKDAVRVN---IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           AT    +T+L K Y KDAV ++       +   +       + +          + +Y  
Sbjct: 263 ATFPKWVTSLTKKYLKDAVTIDLVGSEEAHVPTTVSHKAINVPSNYRVVALQRILEKYAS 322

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              ++VF  T+   +     L     Q  AL G+LSQ  R++ +Q  R G  +    TD+
Sbjct: 323 QGQSLVFTETKHEANEIANGLEGCNVQ--ALHGDLSQGVRASTMQNFRKGLVKTLACTDI 380

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ +++LV+H  L ++ EN +HR+GRTGRAG+ G S+        R  + L    
Sbjct: 381 AARGLDIANVDLVVHYRLPNDRENFVHRAGRTGRAGKTGTSIVFFENQEYRDIKDLENRF 440

Query: 364 NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK-KMVDVLLAKHDPEKIAAGF 420
            +       P  +  R+   + + +    +     D   +    L   H     +A  
Sbjct: 441 KIQFAHAATPDADDFRDTKVKEVTKRLQKVSDKSSDFLSEEATKLYEAHGIRIFSAAL 498


>gi|302673650|ref|XP_003026511.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
 gi|300100194|gb|EFI91608.1| hypothetical protein SCHCODRAFT_62132 [Schizophyllum commune H4-8]
          Length = 437

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 115/371 (30%), Positives = 181/371 (48%), Gaps = 23/371 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I ++    G+   T +Q     P L  +DV+  A+TGSGKT+AFG+ L + L+   
Sbjct: 15  VPDEIRKSFK--GFKEPTPIQACTWPPALEGRDVVGIAETGSGKTLAFGIPLLNRLITSR 72

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD------ 120
              + ++   AL +APTRELA+Q    L  L    G+      GGV    + R       
Sbjct: 73  STTTQSAPVTALVVAPTRELAIQTHDTLSALGKPFGIASVAVFGGVPKEPQVRMLRNANK 132

Query: 121 --LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
                   +VVGTPGR+ D +     ++ ++  +VLDEAD MLD GF +DI  I+ ++  
Sbjct: 133 GKDGMTTRVVVGTPGRILDLMNDGACDLGNVDYLVLDEADRMLDKGFENDIRNIISATKP 192

Query: 179 --KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-----------DYRAVL 225
             +R+ LMFSAT   ++  LA  +Q + VRV + S++   +               +   
Sbjct: 193 LAERQTLMFSATWPDSVRKLASTFQNNPVRVTVGSDDLTANSRVEQIVEVLDDGRQKDSR 252

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           +    R+  +  +         +VF   +   SR  + L    F V  LSG++SQ  R  
Sbjct: 253 LTALLRNANLKKVAAGMDESRVLVFALYKKECSRVEQNLRRQGFSVGGLSGDMSQSARIE 312

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           AL+  + G+  + +ATDVAARG+D+ ++ LV++       E+ +HR GRTGR G+ G S+
Sbjct: 313 ALEAFKTGKTNLLVATDVAARGLDIANVGLVVNYTFPLTIEDYIHRIGRTGRGGKSGKSI 372

Query: 346 FVIPQNMQRRA 356
                    RA
Sbjct: 373 TFFTGEGHERA 383


>gi|241763727|ref|ZP_04761775.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
 gi|241367032|gb|EER61417.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
          Length = 612

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 189/418 (45%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   TSVQ   +   +      ++  D++VS+QTGSGKT AF L + 
Sbjct: 47  LAPELVQAVADLGYTQPTSVQLKAIPLAMGAGDDAKRFIDLMVSSQTGSGKTAAFLLPVL 106

Query: 60  STLLAEN-----------------------------DRFSPASA-------PLALAIAPT 83
            TL+ +                               R  P +A       P AL + PT
Sbjct: 107 HTLIQQQAEAEAEERAAFERAVAEAAVRGEPAPKRAKRKDPTNARNFKAATPGALILCPT 166

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A++VV TPGRL D  R   
Sbjct: 167 RELAQQVAHDAIDLVKHCRGLRVANVVGGMPYQLQIAKLQNANLVVATPGRLLDLQRSMQ 226

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 227 IKLDKVQFLVVDEADRMLDLGFSDDLAELNQLTSQRKQTMMFSATFAPRIQQLAMRVMHD 286

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                      + + +  +             +   + + LR      AIVF ST+    
Sbjct: 287 GGASVQKVTIDSPQEKHANIKQMLYWADNAQHKRKLLDHWLRDTTINQAIVFASTQVECD 346

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R G+ ++ +ATDVAARGID+P +  V +
Sbjct: 347 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRAGQVQILVATDVAARGIDVPTITHVFN 406

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR G+++       +R+   +   +      +  P +E
Sbjct: 407 FGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIYDIESYSRQQFKADVVPGME 464


>gi|323454961|gb|EGB10830.1| hypothetical protein AURANDRAFT_21789 [Aureococcus anophagefferens]
          Length = 510

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 116/408 (28%), Positives = 189/408 (46%), Gaps = 25/408 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F    + + + +AL E+     T +Q   +   L  +D++  A TGSGKTVAF + L
Sbjct: 64  IKSFAGMGLERDLLDALGEKRITRPTPIQVQGMPVALAGRDMIGIAFTGSGKTVAFSVPL 123

Query: 59  ASTLLAENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115
               L E +R SP      P+ L + P+RELA Q    +++  A+           +   
Sbjct: 124 IVRAL-EAERRSPLRAGEGPVGLVLCPSRELARQTWEVVDFFMARLRGAGGRRGDVLRSA 182

Query: 116 RERRDLQNGA----------HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
                   G           H VV TPGRL D +  + + +       LDE D MLDLGF
Sbjct: 183 CCIGGEPKGPQLDDLRRRGVHAVVATPGRLKDFLESRQVRLGRCSYFCLDEGDRMLDLGF 242

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +++  +++    +R+ L+FSAT+       A+     +V VN++     + D+      
Sbjct: 243 DEEVHKVMNHFEAQRQTLLFSATMPQKFQDFARGALVRSVLVNVSRAGAANLDVIQEVEY 302

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V L  R   ++  L+       I FC  +  V    + L     + V++ G   Q ER+ 
Sbjct: 303 VKLEARIVYLLECLQKTAPPVVI-FCERKGDVDDIHEYLLLKGVEAVSIHGGKDQGERNG 361

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
           A+   + G   V +ATDVAA+G+D PD++ VI+ ++ +  EN +HR GRTGR G+ G++ 
Sbjct: 362 AIDAFKRGAKDVLVATDVAAKGLDFPDIQHVINFDMPAEIENYVHRIGRTGRCGKTGVAT 421

Query: 346 FVIPQNMQ----RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
             I + ++       + L  EA   V     P ++ + E DA R+  D
Sbjct: 422 TFINKTVEPSSLLDLKHLLVEAKQRVP----PVLQVLDEPDANRLAGD 465


>gi|300972035|ref|ZP_07171795.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|300309257|gb|EFJ63777.1| DEAD/DEAH box helicase [Escherichia coli MS 200-1]
 gi|324011376|gb|EGB80595.1| DEAD/DEAH box helicase [Escherichia coli MS 60-1]
          Length = 432

 Score =  167 bits (421), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      A  + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQAFVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPL 353

Query: 382 DAQ 384
            A+
Sbjct: 354 KAE 356



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLK 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|57651951|ref|YP_186455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161365|ref|YP_494213.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195366|ref|YP_500170.1| hypothetical protein SAOUHSC_01659 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221673|ref|YP_001332495.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509787|ref|YP_001575446.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140022|ref|ZP_03564515.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253732211|ref|ZP_04866376.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258450613|ref|ZP_05698675.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|262051220|ref|ZP_06023444.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|282920107|ref|ZP_06327832.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|284024617|ref|ZP_06379015.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848589|ref|ZP_06789335.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|304380853|ref|ZP_07363513.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|57286137|gb|AAW38231.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127339|gb|ABD21853.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202924|gb|ABD30734.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150374473|dbj|BAF67733.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368596|gb|ABX29567.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724000|gb|EES92729.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257861771|gb|EEV84570.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus A5948]
 gi|259160857|gb|EEW45877.1| hypothetical protein SA930_1651 [Staphylococcus aureus 930918-3]
 gi|269941048|emb|CBI49432.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282594455|gb|EFB99440.1| ATP-dependent RNA helicase [Staphylococcus aureus A9765]
 gi|294824615|gb|EFG41038.1| ATP-dependent RNA helicase [Staphylococcus aureus A9754]
 gi|302751389|gb|ADL65566.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340580|gb|EFM06514.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|315198747|gb|EFU29075.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140557|gb|EFW32411.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144094|gb|EFW35863.1| DEAD/DEAH box helicase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329314234|gb|AEB88647.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329728429|gb|EGG64866.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329733171|gb|EGG69508.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 448

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|168207373|ref|ZP_02633378.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|168216902|ref|ZP_02642527.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
 gi|182624735|ref|ZP_02952516.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|170661259|gb|EDT13942.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens E str. JGS1987]
 gi|177910132|gb|EDT72526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens D str. JGS1721]
 gi|182381051|gb|EDT78530.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens NCTC 8239]
          Length = 405

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L  K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 9   LSEEVLKSLVGLGIEEPTDIQEKAIPEILNGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 69  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D++ ++ S P+  + L+
Sbjct: 123 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLI 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 183 FSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 243 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 303 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 362

Query: 364 NVSVVW 369
            + +  
Sbjct: 363 KIKIPR 368


>gi|159040018|ref|YP_001539271.1| DEAD/DEAH box helicase domain-containing protein [Salinispora
           arenicola CNS-205]
 gi|157918853|gb|ABW00281.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
           CNS-205]
          Length = 469

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 141/464 (30%), Positives = 210/464 (45%), Gaps = 26/464 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ +  AL+ +G      +Q A +   L  +DVL   QTGSGKT+AFGL L + L A+ 
Sbjct: 24  LPQPLVRALARQGITAPFEIQRATMPDALAGRDVLGRGQTGSGKTLAFGLPLLARL-ADG 82

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R  P   P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G  
Sbjct: 83  ERARP-RHPRALVLVPTRELAMQVSDALFPLGRTIGVFLRTAVGGVPYDRQISALRRGVE 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 142 VLVATPGRLADLIERGVCRLDDIEVTVLDEADQMADMGFLPEVTELLAKTPADAQRLLFS 201

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L + +  D V  + A      + +D+  +L+   D+    V          
Sbjct: 202 ATLDGDVDALVRRFMTDPVTHSTAPPTAAVTTMDHHLLLIPPHDK--FSVVASIAAREGR 259

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAAR
Sbjct: 260 TMVFARTQLGVDRLVQQLAAVGVRAGGLHGGKTQRMRTRTLAEFREGRMNVLVATDVAAR 319

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+H +   +P++ LHR+GRT RAG  G    +     +R    +  +A V 
Sbjct: 320 GIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGEAGAVATLALPKQRRGTLAMLEKAGV- 378

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                AP+   +R         DP   + I   E   V V      PE       R H +
Sbjct: 379 -----APAQTRVRAG-------DPALAELIGAREPSGVPVRDE---PEP------RRHTS 417

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
                             R  +     +   G  +   G   FS
Sbjct: 418 RPDGARRFPDRHRRGEHGRSGERRHPGRPADGRSERRSGDRRFS 461


>gi|149182026|ref|ZP_01860512.1| YqfR [Bacillus sp. SG-1]
 gi|148850291|gb|EDL64455.1| YqfR [Bacillus sp. SG-1]
          Length = 434

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 183/360 (50%), Gaps = 8/360 (2%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  +    I EA+   G++  T +Q+ ++    R +  +  +QTG+GKT ++ L + + 
Sbjct: 5   FEQYDFQPFINEAIERLGFIEPTEIQKKMIPLINRGESAIGQSQTGTGKTHSYLLPILNK 64

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +   +          A+  APTRELA Q+ +E+  +  +  +     IGG    R    L
Sbjct: 65  INRNSQEV------QAVITAPTRELAQQIYQEILKITNEEEITSRCFIGGTDKQRMIDKL 118

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +    IVVGTPGR+ D ++   L +     +V+DEAD MLD+GF  D++ I    P+K +
Sbjct: 119 KTQPQIVVGTPGRINDLVKEGALLVHRADMLVVDEADLMLDMGFIFDVDQIAARMPEKLK 178

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L+FSATI   +    K Y ++    ++  E+    +I +  +     ++D+ + + L  
Sbjct: 179 ILVFSATIPEKLKPFLKKYMENPQYAHVEPEHISAKNIKHILLPRKSRNKDDLLYDALSS 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                AIVF +T+A        L     +V  + G+LS +ER   ++ +R    +  +AT
Sbjct: 239 LNPYLAIVFTNTKAKADEVADYLLSKGMKVGRIHGDLSPRERKKMMKQIRALEYQYIVAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  +I+ E+    +  +HR+GRT RAG  G++V +   + +    +L +
Sbjct: 299 DLAARGIDIEGVSHIINYEIPGELDFYIHRTGRTARAGYSGIAVTIYEPSDEDALNQLEK 358


>gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 430

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 122/368 (33%), Positives = 191/368 (51%), Gaps = 10/368 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL++ G    T +Q+  + P L  +D++  AQTGSGKT+A+ L L        D      
Sbjct: 19  ALAKAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLLQQRCLAPDTAPRVL 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV   L  L A         V  GG S++ +   L+ GA +VV T
Sbjct: 79  G--ALVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADLVVAT 136

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L ++ +  +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT  P
Sbjct: 137 PGRLLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSATFPP 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI +LAK   +D +RV I +   Q   I   A+ V    R   + ++L+ H     +VF 
Sbjct: 197 AIASLAKRRLRDPLRVTIDATPEQAPAIAQCAIAVDAGQRTQLLRHLLQEHAWPQLLVFV 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ++R S  +  + L++     + L GELSQ  R   L+  +    +V +ATD+A RGID+ 
Sbjct: 257 ASRHSADKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGIDID 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV--- 368
            L  V++ +L  +  +  HR GRT RAG  G+++  +  +  ++   + +   + V    
Sbjct: 317 ALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQWRLIEKRQGLRVPTSV 376

Query: 369 ---WEPAP 373
              +EP P
Sbjct: 377 IEGFEPTP 384


>gi|41248|emb|CAA36872.1| unnamed protein product [Escherichia coli]
 gi|315619429|gb|EFU99973.1| ATP-independent RNA helicase dbpA [Escherichia coli 3431]
          Length = 432

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 128/384 (33%), Positives = 194/384 (50%), Gaps = 14/384 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSI--- 350

Query: 382 DAQRILQDPLFLDSIQGDEKKMVD 405
                L+  +    I G +K  + 
Sbjct: 351 ---ATLEAEMATLCIDGGKKAKMR 371



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|196001667|ref|XP_002110701.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
 gi|190586652|gb|EDV26705.1| hypothetical protein TRIADDRAFT_50105 [Trichoplax adhaerens]
          Length = 722

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 106/383 (27%), Positives = 180/383 (46%), Gaps = 28/383 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             + + + + +S+  Y   T +Q   +   L+ +D++  A+TGSGKT AF + L   + +
Sbjct: 298 SELSKELLDIISDLKYNEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITS 357

Query: 65  ENDRFSPAS---APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                  A     P A+ +APTRELA Q+  E        G+     IGG++   +   L
Sbjct: 358 LPKIVREADIDQGPYAIIMAPTRELAQQIEEEAARFGKPVGIRTVAVIGGLNREEQGFLL 417

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS----- 176
           + G  IV+ TPGRL D +    L ++    VVLDEAD M+D+GF  D++ IL+       
Sbjct: 418 RQGCEIVIATPGRLLDVLDNSYLVLNQCTYVVLDEADRMIDMGFEPDVQSILEYLPVSNQ 477

Query: 177 --------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                + R+ +MF+AT+ P +  LA++Y +    V I S  +  
Sbjct: 478 KPDTDDAQDPNKIRLKLGDKNRYRQTVMFTATMPPPVERLARSYLRRPAVVYIGSAGKPT 537

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++    ++   +     +  L        I+F + +       K L +  ++   L G
Sbjct: 538 ESVEQIVHMMKNENDKRKKLVTLLKTLESPIIIFVNQKKGCDVLAKSLEKIGYRSATLHG 597

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             SQ +R  AL  ++ G   + +ATDVA RGID+ D++ VI+ +++ + E+  HR GRTG
Sbjct: 598 GKSQDQRELALNGLKSGSKDILVATDVAGRGIDIRDVQYVINYDMAKSIESYTHRIGRTG 657

Query: 337 RAGRKGMSVFVIPQNMQRRAERL 359
           RAG+ G ++  +  +       L
Sbjct: 658 RAGKTGTAITFLTNDDSGVFYDL 680


>gi|170763913|ref|ZP_02635037.2| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712566|gb|EDT24748.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 407

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 186/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L+ K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 11  LSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 71  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D++ ++ S P+  + L+
Sbjct: 125 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLI 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 185 FSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 245 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 305 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 364

Query: 364 NVSVVW 369
            + +  
Sbjct: 365 KIKIPR 370


>gi|110800080|ref|YP_696204.1| DEAD-box ATP dependent DNA helicase [Clostridium perfringens ATCC
           13124]
 gi|110674727|gb|ABG83714.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens ATCC 13124]
          Length = 405

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 186/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L+ K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 9   LSEEVLKSLVGLGIEEPTDIQEKAIPEILKGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 69  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D++ ++ S P+  + L+
Sbjct: 123 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLI 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 183 FSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 243 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 303 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 362

Query: 364 NVSVVW 369
            + +  
Sbjct: 363 KIKIPR 368


>gi|70948515|ref|XP_743756.1| RNA helicase-1 [Plasmodium chabaudi chabaudi]
 gi|56523410|emb|CAH76963.1| RNA helicase-1, putative [Plasmodium chabaudi chabaudi]
          Length = 633

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 184/389 (47%), Gaps = 27/389 (6%)

Query: 6   NIPQVIGEALSERGY-------------VNLTSVQEAILNPDLREKDVLVSAQTGSGKTV 52
           ++P  I +   +  +                T +Q   L   L  +D++  A TGSGKT+
Sbjct: 178 DVPPPI-KNFKDMKFPKAILKGLKKKKINKPTQIQMQGLPSILIGRDIIGIAFTGSGKTI 236

Query: 53  AFGLALASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------V 104
            F L L  T L    R        PL L I P+RELA Q    + +              
Sbjct: 237 VFVLPLIMTCLEAELRCPIEEGEGPLGLIICPSRELASQTHNIINYFCEYLHKDNFPMLK 296

Query: 105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG 164
               IGGVS + + ++++ G H++V TPGRL D +  K + +   + +  DEAD ++DLG
Sbjct: 297 SLCVIGGVSTYEQGKEIKKGVHMLVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLG 356

Query: 165 FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
           F ++I   LD+   +R+ L+FSAT+   I   AK+   + + +N+      + D+     
Sbjct: 357 FEEEIRNTLDNFSNQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVE 416

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
            V    + + ++ +L+  G    ++FC  +  V    + L       +A+ G L Q ER 
Sbjct: 417 YVKEEFKLSYLLQVLQKTGPP-VLIFCENKKDVDDVHEYLLLKGVNAIAIHGSLGQTERL 475

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+ + R+G   V + TDVA++G+D P +E VI+ ++  + EN +HR GRTGR G+ G++
Sbjct: 476 EAINLFRNGEKDVLVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIA 535

Query: 345 VFVIPQNMQR----RAERLFREANVSVVW 369
              I +N +       + L  EA   +  
Sbjct: 536 TTFINKNQEEAILLDLKALLIEAKQKIPP 564


>gi|71906768|ref|YP_284355.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
 gi|71846389|gb|AAZ45885.1| ATP-dependent RNA helicase DbpA [Dechloromonas aromatica RCB]
          Length = 466

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 199/378 (52%), Gaps = 10/378 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F+ +P    +   L++  Y+++T +Q A L   L   D++  A+TGSGKT AFGLAL 
Sbjct: 9   QSFDTLPLSPAMLANLAQLEYLSMTPIQAASLPLALAGNDLIAQAKTGSGKTAAFGLALL 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRER 118
           + L       +   A  A+ + PTRELA QV +E+  L      +  +  +GG ++  + 
Sbjct: 69  NRLN------TSRFAVQAMVLCPTRELADQVTQEIRRLARFEENIKVLSLVGGSTLRNQA 122

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ G HIVVGTPGR+ DH+    L +  L  +VLDEAD MLD+GF DDI ++    P 
Sbjct: 123 NSLEKGVHIVVGTPGRIMDHMERGYLKLDELNTLVLDEADRMLDMGFHDDIAYVAKRCPA 182

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT    I  LA+ + +    V +   + +      R   V   +R +A+V +
Sbjct: 183 QRQTLLFSATYPEGIALLARQFLRQPKEVKLLELHEETKI-RQRFYEVKDDERLDAVVRL 241

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+++   + + FC+T+        VL       + L+G+L Q+ER   L    +    V 
Sbjct: 242 LKHYRPVSTLAFCNTKQQCRDLVNVLRHAGIHALTLNGDLEQRERDQVLIQFANRSCSVL 301

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+  LE VI+ +++ +PE  +HR GRTGR   +G ++ +     +RR   
Sbjct: 302 VATDVAARGLDIDQLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALSLCSSGDRRRVAT 361

Query: 359 LFREANVSVVWEPAPSVE 376
           +       +      +VE
Sbjct: 362 IAEMMKCKLDVLDLKTVE 379



 Score = 57.3 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              S   +  G K K     +M  L   +G+ R+ +G I V    T+V V+        R
Sbjct: 388 PPMSTLLMLGGRKDKIRPGDVMGALAGEAGLTREQVGKITVTDQSTYVAVARAVAKETVR 447

Query: 524 TVKLD--KGIQLKY 535
            +     KG  +K 
Sbjct: 448 KLSAGKVKGKTVKV 461


>gi|169343937|ref|ZP_02864931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
 gi|169297939|gb|EDS80031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens C str. JGS1495]
          Length = 405

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 185/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L  K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 9   LSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 69  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQMEKLKNK 122

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D++ ++ S P+  + L+
Sbjct: 123 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVKSVVKSCPRDTQKLI 182

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 183 FSATMNEKALETADELIGTSELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 242

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 243 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 302

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 303 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 362

Query: 364 NVSVVW 369
            + +  
Sbjct: 363 KIKIPR 368


>gi|3776005|emb|CAA09205.1| RNA helicase [Arabidopsis thaliana]
          Length = 451

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 173/370 (46%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 77  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 136

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 137 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 190

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 191 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 250

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 251 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL 310

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +      K+L    F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 311 DFNQVVIFVKSVSRADELNKLLVGCHFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 370

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 371 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 430

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 431 RFEVDIKELP 440


>gi|308456140|ref|XP_003090535.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
 gi|308262642|gb|EFP06595.1| hypothetical protein CRE_31571 [Caenorhabditis remanei]
          Length = 745

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/403 (25%), Positives = 184/403 (45%), Gaps = 10/403 (2%)

Query: 4   FENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P      E L E  Y   T +Q   +   L   DV+ +A+TGSGKT+A  + +   
Sbjct: 77  FTDFPLSWRTQEGLKENEYTKPTEIQRDTIAHSLSGADVVGAAKTGSGKTLALVIPILEA 136

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R+SP     AL I+PTRELA+Q    +  +    G    + IGG  V  E+  +
Sbjct: 137 LW--RARWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVSYEKNRI 194

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IV      L      + +N   L+ +VLDEAD MLD+GF   +  I+++ P +R+
Sbjct: 195 SGINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFAKQLNSIVNNLPSERQ 254

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT +  +  L +    D V V++          ++    V+V    + N + + +
Sbjct: 255 TLLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEESKINTLWSFI 314

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRARV 297
             H  K +++F S+       T+V ++    +  +   G ++Q++R        + +A V
Sbjct: 315 EAHKKKKSLIFVSSCKQARFLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKFDEAKAAV 374

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++  + +    
Sbjct: 375 LIATDVASRGLDFEHIDWVIQMDCPAQIDDYIHRVGRSARMDDSGNSLLMVTSSQESPMI 434

Query: 358 RLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQG 398
               + N+ +        +V  +R +    + + P   +  Q 
Sbjct: 435 AKLEKHNIPIEELKIHPDAVTDVRLKLRAMLAESPELKEWAQK 477


>gi|255513847|gb|EET90112.1| DEAD/DEAH box helicase domain protein [Candidatus Micrarchaeum
           acidiphilum ARMAN-2]
          Length = 434

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 111/372 (29%), Positives = 180/372 (48%), Gaps = 12/372 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE+I   + +   LS  G    T VQ   +   L  +D++V A+TG+GKT AF L +
Sbjct: 1   MNEFEDIGISKRLASGLSAIGITAPTDVQRESIPKVLSGRDIIVRAKTGTGKTYAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +       S      AL +APTRELAVQ+  E  +      +   V  GGVS++ + 
Sbjct: 61  MEKI-------SRGRDIEALILAPTRELAVQI-FESGYKLRDNEIRAVVAYGGVSINMQM 112

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G +I++GTPGR+ D I    L++  +K +VLDEAD MLD+GF DD++ I+  + +
Sbjct: 113 QKISRGCNILIGTPGRILDLISRGVLDLEKVKYLVLDEADIMLDMGFIDDVKDIVRHTGR 172

Query: 179 KRRMLMFSATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ + FSATI     +   +  +          E+   + I +    V  +++ +A++ 
Sbjct: 173 GRQTMFFSATIPRELHSLANEFMRNPEFISVGEKEDSIVNTISHTYCEVGRNEKFSALLA 232

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            +  +  K  I+F  T+         L    ++ + + G LSQ  R N L       A +
Sbjct: 233 YIDEYKPKKTIIFAETKFGAEILASALRNAGYESLLMHGGLSQNRRENTLN-NFKTDATM 291

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            + T+V ARGID+ D+  VI+ +   NP   LHR GR+ R G  G +  +I    +    
Sbjct: 292 LVTTNVTARGIDIRDISDVINYDCPDNPRVYLHRVGRSARMGADGRAFSIITHQQRNLIS 351

Query: 358 RLFREANVSVVW 369
            +   A + V  
Sbjct: 352 DIEYMAKIDVKE 363


>gi|332520339|ref|ZP_08396801.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332043692|gb|EGI79887.1| DEAD/DEAH box helicase domain protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 373

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 112/376 (29%), Positives = 195/376 (51%), Gaps = 13/376 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F ++   +   ++L E      T +QE  +   ++ K D +  AQTG+GKT A+GL 
Sbjct: 1   MSTFRDLGIHKNYIKSLKELDIKTPTEIQEQAIPILIKSKVDFVGLAQTGTGKTAAYGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVH 115
           +   + A         +   L IAPTREL  Q+ ++L          + V    GG  + 
Sbjct: 61  VLHKVDANK------KSVQGLIIAPTRELVQQIKKQLFKFTKYNDKKIFVEGVYGGEKID 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            +  +L+   HI+V TPGRL D +    +++ H+  +VLDEADEML +GF+ D+  ILD+
Sbjct: 115 IQISNLKRPTHIIVATPGRLVDLLDKNIIDLKHINTLVLDEADEMLSMGFKKDLNIILDA 174

Query: 176 SPK--KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           + K  +   L  +   +     + +   KDA RV +   +  +++I +  V   + D+ +
Sbjct: 175 TTKSARNTWLFSATMPTDLKAIVNRYISKDAARVEVNRNSIVNANISHHFVQTPIVDKAH 234

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            I+ +L     +  I+FC T+A      + L +  F V AL G+++Q+ER   ++  ++ 
Sbjct: 235 TIMRLLDDRADERGIIFCRTKAGTQALKQQLQKEGFNVDALEGDMTQKERDKVMRAFKNT 294

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
             ++ I+TDV+ARGID+ +L  +IH +L  + E   HRSGRT RAG+KG S+ ++  +  
Sbjct: 295 NLQILISTDVSARGIDVNNLAFIIHHQLPEHIEYYTHRSGRTARAGKKGESIALVLPSEL 354

Query: 354 RRAERLFREANVSVVW 369
           ++   L +   + +  
Sbjct: 355 KKVAELEKALGIKIKE 370


>gi|319440997|ref|ZP_07990153.1| putative ATP-dependent RNA helicase [Corynebacterium variabile DSM
           44702]
          Length = 523

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 118/363 (32%), Positives = 175/363 (48%), Gaps = 4/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  +   L+ +G V+   +Q A +   L  +DVL    TGSGKT  FGL + S L+   
Sbjct: 140 LPYPVVNELTHQGLVHPFPIQAAAIPDGLAGRDVLGRGPTGSGKTFTFGLPVISRLV--- 196

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S    P A  + PTRELA QV   L       G  V   +GGV++ R    L     
Sbjct: 197 GGSSKPGHPRAAVLVPTRELAQQVAERLRPFAEAVGQRVIEVVGGVNIKRNFTALARPVD 256

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR  D I  K L +  ++ V LDEAD+M D+GF   +  +LD  P   + L FS
Sbjct: 257 ILVATPGRAEDLIGQKALFLDQVEIVALDEADQMADMGFLPQVRRLLDRMPSDAQHLFFS 316

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  L   Y  D V  +      +   +D+   +V         V +     +  
Sbjct: 317 ATLDGDIKVLIDQYMNDPVTHSTGEVAAKVDSMDHFLGVVPDKP-FRNEVVLALGRASTK 375

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+ +V R  K L       V L G+  Q  R+ A++   DG A V +ATD+AAR
Sbjct: 376 TIMFMRTKHTVDRQVKKLVRDGTPAVGLHGDKGQGARTRAIREFTDGTATVLVATDIAAR 435

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  ++LV+H +  +  +  +HR+GRT RAG KG  + +   + ++    + R+A V+
Sbjct: 436 GIDIKGVDLVVHIDPPAEHKAYVHRAGRTARAGEKGTVLTLTLADQKKDTVAMMRKAGVT 495

Query: 367 VVW 369
              
Sbjct: 496 PTE 498


>gi|325088388|gb|EGC41698.1| DEAD/DEAH box RNA helicase [Ajellomyces capsulatus H88]
          Length = 547

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 165/408 (40%), Gaps = 55/408 (13%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F++  +  V+ E +   GY   T +Q   +   L   D++  AQTGSGKT AF + +
Sbjct: 116 VKNFDDAGLHPVMRENIKLCGYKAPTPIQAYAIPAVLTGNDLIAVAQTGSGKTAAFLIPV 175

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            S L+ +  + +                    PL L +APTREL+ Q+  E   L  ++ 
Sbjct: 176 LSKLMGKAKKLAAPRPDLGNGFSESLDCVRAEPLVLIVAPTRELSTQIFDEARRLCYRSM 235

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           +   V  GG     +R +LQ G  +++GTPGRL D +    +   H     L +    L 
Sbjct: 236 LRPCVVYGGGPTREQRLELQKGCDVLIGTPGRLLDFMEKPHILSLHRVKSSLYDVSRRLS 295

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                ++                           A     D VR+ I      H ++   
Sbjct: 296 TKVVVNL--------------------------PANFLAADHVRIRIGRAGSAHLNVSQN 329

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            V      +  A+ ++L        +VF +T+A        L        ++  + +Q+E
Sbjct: 330 IVYAEDHLKKQALYDLLISMPPSRTLVFVNTKAQADLIDDYLYNMGLPSTSIHSDRTQRE 389

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGRTGRA 338
           R +AL+  +  ++ + +AT V+ARG+D+ ++  VI+ ++ S      E  +HR GRT R 
Sbjct: 390 REDALRAFKTAKSPIMVATGVSARGLDIKNVMHVINFDMPSAAHGGIEEYIHRIGRTARI 449

Query: 339 GRKGMSVFVIPQ----NMQRRAERLFREANVSVV---WEPAPSVEAIR 379
           G +G++          ++     ++  E    +        P  + +R
Sbjct: 450 GNEGLATSFYNHDRNSDIAADLVKILLECKQPLPDFLESEKPEGDDVR 497


>gi|282855131|ref|ZP_06264463.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
 gi|282581719|gb|EFB87104.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
          Length = 700

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 296 REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 352

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 353 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 412

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 413 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 470

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 471 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 530

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 531 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 590

Query: 367 VVW 369
            V 
Sbjct: 591 PVE 593


>gi|156391217|ref|XP_001635665.1| predicted protein [Nematostella vectensis]
 gi|156222761|gb|EDO43602.1| predicted protein [Nematostella vectensis]
          Length = 777

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 105/380 (27%), Positives = 170/380 (44%), Gaps = 27/380 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL--- 63
           IP  I E + + GY + T +Q   +   L+ +D++  A+TGSGKT AF + L   ++   
Sbjct: 357 IPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLLVWIMGLP 416

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P AL +APTRELA Q+  E+       G+     IGG+S   +   L+ 
Sbjct: 417 KIERDNDADQGPYALILAPTRELAQQIEEEILKFGRPLGIRTVSVIGGLSREDQGFQLRL 476

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  IV+ TPGRL D +  + L ++    +V+DEAD M+D+GF  +++ IL+  P      
Sbjct: 477 GVEIVIATPGRLIDVLENRYLVLNRCSYIVMDEADRMIDMGFEPEVQKILEHLPVSNVKP 536

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH------------------------SDI 219
               +  P          K    V   +                               +
Sbjct: 537 DSEDSEDPEHLLTHMGKDKYRQTVMFTATMPPQVERLAKNYLRRPAVVYIGSVGKPVERV 596

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
           + R  LV    +   ++ +L        I+F + +       K L +  F+   L G  +
Sbjct: 597 EQRVYLVNEQQKRKKLLELLNKDLEPPIIIFVNQKKGADVLAKSLEKMGFRATTLHGGRN 656

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q++R  AL  ++ G   + +ATDVA RGID+ D+  VI+ +++   E+  HR GRTGRAG
Sbjct: 657 QEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIGRTGRAG 716

Query: 340 RKGMSVFVIPQNMQRRAERL 359
           + G++V  + Q+       L
Sbjct: 717 KTGIAVSFLTQSDSGVFYDL 736


>gi|239996465|ref|ZP_04716989.1| ATP-dependent RNA helicase, DEAD box family protein [Alteromonas
           macleodii ATCC 27126]
          Length = 441

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 180/374 (48%), Gaps = 5/374 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I   L  +    LT +QE  + P ++ KD++ S++TGSGKT AF +   + L+++ 
Sbjct: 8   VHHKIISKLETKNISTLTEIQERTMLPAIQGKDIIASSKTGSGKTFAFLVPAINRLMSQ- 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +      P AL +APTRELA QV  E + +     +  ++ +GG + + + + L+   H
Sbjct: 67  -KALSRQDPRALILAPTRELAKQVFIEAKSMCTGLNLTCSLIVGGENYNDQVKALRRNPH 125

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+VGT GR+ DH+  K + ++ L+ ++ DEAD MLDLGF   ++ I D +  ++R  M  
Sbjct: 126 IIVGTAGRVADHLLDKSVYLNGLELLIFDEADRMLDLGFSAQLKMINDYADHRKRQTMLF 185

Query: 187 ATISPAITTLAKNYQKDA---VRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
           +     I       Q            S                + ++D  +   L    
Sbjct: 186 SATLDNIELKHMTTQLTKGAVRVAVGDSTAEHGDIEQKCFFADNVDNKDQILQFELANRT 245

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              AIVF +TR    R   +L E   + +AL G++ Q +R+  +     G+  + + TD+
Sbjct: 246 YNQAIVFTATREDTDRIAALLNEQNLEAIALRGDMLQSQRAAVMSAFARGQHSILVTTDL 305

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           A+RG+DL  + LV++ +L  N +  +HR GRTGRAG+KG +  +I        E L    
Sbjct: 306 ASRGLDLSKVGLVVNFDLPKNADEYIHRIGRTGRAGQKGEAFSLIGPRDWNSFEGLKNHL 365

Query: 364 NVSVVWEPAPSVEA 377
             ++   P     A
Sbjct: 366 QYALECSPHDEFSA 379


>gi|307110891|gb|EFN59126.1| hypothetical protein CHLNCDRAFT_137938 [Chlorella variabilis]
          Length = 1343

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 108/415 (26%), Positives = 186/415 (44%), Gaps = 42/415 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILN---------------------PDLREKDVLVSAQ 45
           +   I E L + G+    S+Q   L                        +  +D +  A+
Sbjct: 453 LSTRILEVLKKGGFEQPLSIQAQALPGAWLGCRGRCSLAAAPWPACSLIMSGRDCIGIAK 512

Query: 46  TGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL----------AVQVGRELE 95
           TGSGKT+AF L +    + +    +    P+ALA+APTREL           + +G+E++
Sbjct: 513 TGSGKTLAFVLPM-MRHVKDQPALANGDGPVALAMAPTRELVTQASVLGWWWLMIGKEVK 571

Query: 96  WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG---KGLNISHLKAV 152
                 G+      GG  V  +  +L+ G  IVV TPGR+ D +     +  N+  +  +
Sbjct: 572 RFAKVVGLTCVCVYGGTGVANQITELKRGTEIVVCTPGRMIDILVTSGGRITNLRRVTYL 631

Query: 153 VLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE 212
           VLDEAD M D+GF   I  I+ +    R+ +MFSAT    +  LA+    + V + +   
Sbjct: 632 VLDEADRMFDMGFEPQIMRIVQNIRPDRQTVMFSATFPRQVEVLARQVLHNPVEIQVGGR 691

Query: 213 NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
           +  + DI     +    DR   ++ IL     +  ++   +    S+             
Sbjct: 692 SVVNKDITQFIEIRPEDDRFLRLLEILGEWYERGKLLIFVS----SQDRCDTLFRDLLRA 747

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            L G   Q +R + +   +     + +AT VAARG+D+ DL LV++ ++ ++ E+ +HR 
Sbjct: 748 GLHGGKDQSDRESTIVDYKANVCNILVATSVAARGLDVKDLVLVVNYDVPNHHEDYVHRV 807

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVWEPAPSVEAIRERDAQ 384
           GRTGRAG KG ++  I  + ++ A  L    +E+   +  + A   EA  ++  +
Sbjct: 808 GRTGRAGAKGSAITFIGPDEEQYAPDLVKALKESGAPIPQDLAAMAEAFGKKRRE 862


>gi|283470836|emb|CAQ50047.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 448

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 102/449 (22%), Positives = 203/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L      V   V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKADVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D      L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAITGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|21283239|ref|NP_646327.1| hypothetical protein MW1510 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486394|ref|YP_043615.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268042|ref|YP_001246985.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394110|ref|YP_001316785.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus JH1]
 gi|253314929|ref|ZP_04838142.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253733192|ref|ZP_04867357.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257793634|ref|ZP_05642613.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|258411066|ref|ZP_05681346.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|258420130|ref|ZP_05683085.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|258437390|ref|ZP_05689374.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|258443596|ref|ZP_05691935.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|258446803|ref|ZP_05694957.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|258453534|ref|ZP_05701512.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|269203186|ref|YP_003282455.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893059|ref|ZP_06301293.1| helicase [Staphylococcus aureus A8117]
 gi|282928191|ref|ZP_06335796.1| helicase [Staphylococcus aureus A10102]
 gi|295406681|ref|ZP_06816486.1| helicase [Staphylococcus aureus A8819]
 gi|296275820|ref|ZP_06858327.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207723|ref|ZP_06924158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297245737|ref|ZP_06929602.1| helicase [Staphylococcus aureus A8796]
 gi|300911804|ref|ZP_07129247.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21204679|dbj|BAB95375.1| MW1510 [Staphylococcus aureus subsp. aureus MW2]
 gi|49244837|emb|CAG43297.1| putative helicase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741111|gb|ABQ49409.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946562|gb|ABR52498.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|253728732|gb|EES97461.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787606|gb|EEV25946.1| DEAD/DEAH helicase [Staphylococcus aureus A9781]
 gi|257840216|gb|EEV64680.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9763]
 gi|257843841|gb|EEV68235.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9719]
 gi|257848595|gb|EEV72583.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9299]
 gi|257851002|gb|EEV74945.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A8115]
 gi|257854378|gb|EEV77327.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6300]
 gi|257864265|gb|EEV87015.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A5937]
 gi|262075476|gb|ACY11449.1| DEAD-box ATP dependent DNA helicase [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282589998|gb|EFB95080.1| helicase [Staphylococcus aureus A10102]
 gi|282764377|gb|EFC04503.1| helicase [Staphylococcus aureus A8117]
 gi|285817240|gb|ADC37727.1| ATP-dependent RNA helicase YqfR [Staphylococcus aureus 04-02981]
 gi|294968428|gb|EFG44452.1| helicase [Staphylococcus aureus A8819]
 gi|296887740|gb|EFH26638.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|297177388|gb|EFH36640.1| helicase [Staphylococcus aureus A8796]
 gi|298694840|gb|ADI98062.1| probable ATP-dependent RNA helicase [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886050|gb|EFK81252.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|302333234|gb|ADL23427.1| ATP-dependent RNA helicase DEAD/DEAH box family protein
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312829946|emb|CBX34788.1| DEAD/DEAH box helicase family protein [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129836|gb|EFT85826.1| DEAD/DEAH box helicase domain protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|323443230|gb|EGB00848.1| ATP-dependent RNA helicase [Staphylococcus aureus O46]
 gi|329727198|gb|EGG63654.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 448

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|240282011|gb|EER45514.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H143]
          Length = 790

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 353 SGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 412

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 413 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYS 472

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 473 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 532

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
           +        +    +     +    +  + +                             
Sbjct: 533 QKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 592

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 593 VDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 652

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 653 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 712

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 713 RTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 763


>gi|121605306|ref|YP_982635.1| DEAD/DEAH box helicase domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594275|gb|ABM37714.1| DEAD/DEAH box helicase domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 417

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 135/405 (33%), Positives = 207/405 (51%), Gaps = 6/405 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+  A++E+GY+  T++Q A +   L+ +D++ SAQTGSGKT AF L L   L    
Sbjct: 12  LLPVLLRAIAEKGYLAPTAIQAAAIPAILQGRDIVGSAQTGSGKTAAFALPLLHQLAQAP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
                      L + PTRELA QVG  +  L       V  AV  GGVS++ +  +L+ G
Sbjct: 72  ADAKRRI--RGLVLVPTRELAAQVGEAIVSLANYLPQRVKVAVVFGGVSINPQMMNLRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I+V TPGRL D I    L +  +  +VLDEAD +LDLGF +++  IL   P +R+ L 
Sbjct: 130 ADIIVATPGRLIDLIDHNALKLDQVGMLVLDEADRLLDLGFGEELGRILALLPAQRQSLF 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PAI  LA     D +R+ + +  +   +I  RA+ V  S R   + ++ +    
Sbjct: 190 FSATFPPAIEALAAGMLTDPLRIEVEAVKQAEPEIVQRAIEVDPSRRTQLLRHLAQTEKW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+ +       L +   +     GELSQ +R+  LQ  +    +V +ATDVA
Sbjct: 250 SRVLVFVATKHAAEIVADKLRKADIEAEPFHGELSQGKRNQVLQDFKAKLLQVVVATDVA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L +V++ +L  +  + +HR GRTGRAG  G+++  +    +   + + +   
Sbjct: 310 ARGIDIAQLPVVVNYDLPRSSVDYIHRIGRTGRAGETGIAISFVSAETEAHFKLIEKRQK 369

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
           +SV  E     E +  +       DP     I+G      D L A
Sbjct: 370 MSVPREQVAGFEPVEVQIPN--AADPAGTGGIKGKRPSKKDKLRA 412


>gi|118469993|ref|YP_885922.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118171280|gb|ABK72176.1| ATP-dependent RNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 460

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 133/400 (33%), Positives = 190/400 (47%), Gaps = 12/400 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +  P  +   L+  G      +Q A L   L  +DVL   +TGSGKT AF L L 
Sbjct: 5   KTFAELGLPAELVSTLAANGVTTPFPIQAATLPDSLNGRDVLGRGRTGSGKTYAFLLPLV 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L         A  P A+ +APTREL  Q+   L  L A TG+      GGV    +  
Sbjct: 65  ARLATSGTPRD-AGKPRAVILAPTRELVTQIEASLAPLAAATGLRTVNIFGGVGAGPQIA 123

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IV+  PGRL DH++ +  ++S ++  +LDEAD M DLGF   ++ +LD +PK 
Sbjct: 124 ALRRGVDIVIACPGRLEDHVQSRHADLSSVEVTILDEADHMADLGFLPGVKRLLDRTPKH 183

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L K Y  D V  ++ S     S + +  + V  + R N  V   
Sbjct: 184 CQRLLFSATLDAGVDVLVKRYLHDPVVHSVDSAQSPVSAMVHHVLHVDNAARIN--VVAD 241

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   IVF  T+      T+ L       V L G LSQ  R+  L    DG A V +
Sbjct: 242 LAAAPGRTIVFARTKHGAKNLTRQLNSRGISAVELHGNLSQNARTRNLTAFSDGSATVMV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARGI + D+ LV+HA+     +  LHRSGRT RAG +G  V ++          L
Sbjct: 302 ATDIAARGIHVDDVSLVVHADPPVEHKAYLHRSGRTARAGNEGTVVTLMLDAQVHDVRNL 361

Query: 360 FREANVS-----VVWEPAPSVEAIRERDAQRILQDPLFLD 394
            R+A V      +     P +  I     +R+  +P+  +
Sbjct: 362 TRKAGVKPTITRISGLDHPVLREIAPG--ERVFGEPIRTE 399


>gi|323440456|gb|EGA98168.1| ATP-dependent RNA helicase [Staphylococcus aureus O11]
          Length = 448

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMCKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|308505474|ref|XP_003114920.1| CRE-GLH-1 protein [Caenorhabditis remanei]
 gi|308259102|gb|EFP03055.1| CRE-GLH-1 protein [Caenorhabditis remanei]
          Length = 798

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 167/389 (42%), Gaps = 30/389 (7%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F    + + + + +   GY   T +Q+  L       D++  AQTGSGKT AF L + 
Sbjct: 372 KTFAEAKLSETMQKNVERAGYTKTTPIQQYALPLIRDGNDIMACAQTGSGKTAAFLLPIM 431

Query: 60  STLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           S L+ +ND  +       P  + + PTRELA Q+  E      +T + +    GG++V  
Sbjct: 432 SRLMDDNDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVSY 491

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDS 175
            +  ++ G+ I+VGT GR+        + +  ++  VLDEAD M+D     +DIE I++ 
Sbjct: 492 NKSQIEKGSTIIVGTVGRIKHFCEEGTIKLDKIRFFVLDEADRMIDGMGFGNDIETIVNY 551

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSD 230
               ++    +   S     + +N     +R N            +  +     L   S+
Sbjct: 552 EGMPKKENRQTLMFSATFPDVVQNCASAFLRENYTMITIDKIGAANKCVVQEFELCDRSE 611

Query: 231 RDNAIVN---------------ILRYHGAKNAIVFCS---TRASVSRFTKVLAEHLFQVV 272
           + + ++                    +   + I F +               + +    +
Sbjct: 612 KKDKLLTLLGIDIDSYSTEKSGCGCLYQEDDCIRFSTGDGRYLGCYLVKCSSSRNYTLFL 671

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
            + G   Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR 
Sbjct: 672 QIHGAREQRERSEALRHFRNGTKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRI 731

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           GRTGR G  G +   I QN       L +
Sbjct: 732 GRTGRVGNSGRATSFI-QNDSPLIPELLK 759


>gi|170579138|ref|XP_001894695.1| ATP-dependent RNA helicase An3 [Brugia malayi]
 gi|158598597|gb|EDP36460.1| ATP-dependent RNA helicase An3, putative [Brugia malayi]
          Length = 754

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 182/400 (45%), Gaps = 23/400 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F ++     I   +   GY   T VQ+  +   +  +D++  AQTGSGKT AF + L +
Sbjct: 290 LFADLKLHPWIEGNIRLSGYGRPTPVQKYSIPTLMNNRDLMSCAQTGSGKTAAFLVPLIN 349

Query: 61  TLLAENDRF----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG 110
            +L                     P AL ++PTREL++Q+  E      +T +  A+  G
Sbjct: 350 NVLQAGPEALYKSTTQQNGRRRQYPAALILSPTRELSLQIYNESRKFAYRTPITSALLYG 409

Query: 111 -GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
              +   +   L+ G HI++ TPGRL D +    + +   + +VLDEAD MLD+GF   I
Sbjct: 410 GRENYREQINKLRLGVHILIATPGRLIDVMEQGLIGLDGCRFLVLDEADRMLDMGFEPQI 469

Query: 170 EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------ASENRQHSDIDYRA 223
             I+D S    +    +A  S       +   +D +  N          +   + +    
Sbjct: 470 RQIVDLSKMPPKGQRVTAMFSATFPKEIQVLAQDFLMPNYVFLAVGRVGSTSENIMQKIV 529

Query: 224 VLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQER 283
            +     +   +  +     +   +VF  T+   S     L +  + VVA+ G+L Q +R
Sbjct: 530 WVEEHEKKSFLMDLLDAGEPSALTLVFVETKRGASDLAYYLQKDGYNVVAIHGDLKQFDR 589

Query: 284 SNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
              L+  R G A + +AT VAARG+D+P+++ VI+ +L S+ +  +HR GRTGR G  G+
Sbjct: 590 EKHLETFRSGVATILVATAVAARGLDIPNVKHVINYDLPSDIDEYVHRIGRTGRVGNVGL 649

Query: 344 SVFVI---PQNMQRRAERLFREANVSV-VWEPAPSVEAIR 379
           +        +N+ R    L  EAN  +  W    S +A R
Sbjct: 650 ATSFFNDKNRNIARDLAELVVEANQELPEWLEKISADAQR 689


>gi|50550293|ref|XP_502619.1| YALI0D09449p [Yarrowia lipolytica]
 gi|74659944|sp|Q6C9P3|DBP3_YARLI RecName: Full=ATP-dependent RNA helicase DBP3
 gi|49648487|emb|CAG80807.1| YALI0D09449p [Yarrowia lipolytica]
          Length = 532

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 177/372 (47%), Gaps = 15/372 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L++  +   T +Q       L  KD++  A+TGSGKT  F +     +L   
Sbjct: 133 LDPRITKVLTK--FPRPTPIQAVSWPYLLAGKDMVGVAETGSGKTFTFAVPALEHVL--- 187

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S       L ++PTRELA+Q+   ++ L    G + AVC+ G     ++R     A 
Sbjct: 188 -STSGGKGVRVLVVSPTRELAMQIYDNIKELCDVVG-LHAVCVYGGVPKEQQRSDLKRAS 245

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            V+ TPGRLCD I     ++S +  +VLDEAD ML+ GF +DI+ I+ S+    R  +  
Sbjct: 246 FVIATPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEEDIKKIIGSTRPTGRQTVMF 305

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQ---HSDIDYRAVLVALSDRDNAIVN--ILRY 241
           +   P                 +  E  +   +  I     ++    ++  +++      
Sbjct: 306 SATWPPEVRKLAEGFMKTPTKVMIGERDELAANKRITQSVEVLDPRAKEGRLLDLLRQYA 365

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +     ++F   +   +R    L    + V A+ G+LSQQ+R+ AL   + G   + +AT
Sbjct: 366 NDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLAT 425

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL-- 359
           DVAARG+D+P+++LVI+       E+ +HR GRTGRAG+ G ++ +  ++ +  +  L  
Sbjct: 426 DVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHEKHLSGALIN 485

Query: 360 -FREANVSVVWE 370
             R A+  V  E
Sbjct: 486 VLRGADQPVPDE 497


>gi|320580417|gb|EFW94640.1| Putative ATP-dependent RNA helicase [Pichia angusta DL-1]
          Length = 499

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 120/380 (31%), Positives = 199/380 (52%), Gaps = 18/380 (4%)

Query: 3   IFENIPQVIGEALSER--GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++  ++   +S     Y   T +Q  +    L+ +D++  A+TGSGKT+AFG+    
Sbjct: 91  SFDHLKPLVDSRISSHLDKYAKPTPIQAVVWPYLLKGRDMVGVAETGSGKTMAFGVPAVE 150

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL  + +     A   L I+PTRELA Q+   L  L AK G +  VC+ G     ++R 
Sbjct: 151 HLLKSDSK-----ALQVLIISPTRELASQIYDNLNELTAKVG-LECVCVYGGVSKDDQRR 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               +  V+ TPGRL D I    +++  +  +VLDEAD ML+ GF +DI+ ++  +   R
Sbjct: 205 AVKRSQCVIATPGRLIDLIEDGSISLDKINYLVLDEADRMLEKGFEEDIKKVMKLTNGNR 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENR--QHSDIDYRAVLVALSDRDNAIVNI 238
           + LMF+AT    +  LA N+    V+V I   +    +  I     +V   +++  ++ +
Sbjct: 265 QTLMFTATWPKEVRELAMNFMDKPVKVTIGQRDELSANKRIQQIVEVVDPREKEQKLLQL 324

Query: 239 LRYHG-----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           LR +          ++F   +   +R  K L    F V AL G+L+Q +R+ ALQ  + G
Sbjct: 325 LRKYQSGSKKDDKLLIFALYKKEAARVEKTLTYKGFSVAALHGDLNQAQRTQALQDFKAG 384

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
           +  + +ATDVAARG+D+P++++VI+       E+ +HR GRTGRAG+ G+S  +  ++ +
Sbjct: 385 KHNILLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGISHTLFTEHEK 444

Query: 354 RRAERLF---REANVSVVWE 370
             A  L    R A+  V  E
Sbjct: 445 HLAGALMNVLRGADQPVPEE 464


>gi|241953695|ref|XP_002419569.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
 gi|223642909|emb|CAX43164.1| pre-mRNA-processing ATP-dependent RNA helicase, putative [Candida
           dubliniensis CD36]
          Length = 873

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 104/400 (26%), Positives = 184/400 (46%), Gaps = 24/400 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  VI + L    +   +++Q   L   L  +DV+  A+TGSGKT+++ L +   +  +
Sbjct: 291 NLSSVIHDKLK---FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHI-HD 346

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    P+ L ++PTRELA+Q+ +E+  +      + V  C GG S+  +  +L+ G
Sbjct: 347 QQFLKDNQGPIGLILSPTRELALQIEKEILNFTKKNNYLRVCCCYGGSSIENQINELKKG 406

Query: 125 AHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             I+VGTPGR+ D      G+  N+     VVLDEAD M DLGF   +  I       R+
Sbjct: 407 VEIIVGTPGRVIDLLAANSGRVTNLKRCTFVVLDEADRMFDLGFEPQVNKIFTQIRPDRQ 466

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS------------ 229
            ++FSAT    + TLAK    D V + +   +    +I    +L   S            
Sbjct: 467 TVLFSATFPRKMETLAKQILADPVVIIVGGISVVAPEIKQDVILFETSLEEQDKYKQQRI 526

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG---ELSQQERSNA 286
           ++ + I++  +     + I+  + + + +                     +   ++ +  
Sbjct: 527 EKLHDILSNYQIERPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIK 586

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
                D    + IAT +AARG+D+ +L LVI+ +  ++ E+ +HR GRTGRAG KG +V 
Sbjct: 587 EFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAVT 646

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
            +  +  +    L +   +S   +  P +E I  +   ++
Sbjct: 647 FVSSSQPKEVFNLVKALKLS-HSDIDPKLEEIANKFINKV 685


>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 546

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 190/385 (49%), Gaps = 12/385 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  +I   +  A+  +GY   T +Q   + P L  +DV+  A+TGSGKT AF + + S 
Sbjct: 87  FESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPVLSK 146

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L       S  +    + +APTRELA+Q  +  + L   T + VA  +GG S+  +  DL
Sbjct: 147 LRTH----SLKAGARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADL 202

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N   ++V TPGRL  HI       +  +  VVLDEAD +L++GF D ++ I++S    R
Sbjct: 203 SNNPDVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVADVR 262

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+  A+    +   ++   V + +E +  SD+    VL+   ++  A++ +LR
Sbjct: 263 QTLLFSATLPSALAEFVRVGLREPEVVRLDAEMKISSDLRMSFVLMRSDEKVAALLYMLR 322

Query: 241 YHGAK--NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               K    +VF STR  V     VL     +V ++ G +    R  AL   R  +A V 
Sbjct: 323 EVIPKRQQTVVFASTRHHVEWLQNVLEFEGVKVSSIYGSMDMMARKMALGRFRAKKADVL 382

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+P L+ VI+ +  +  +  +HR GR  RAGR G +   + +        
Sbjct: 383 VVTDVAARGIDIPLLDNVINYDFPAKGKLFVHRVGRVARAGRTGNAHSFLVKEELGFLVD 442

Query: 359 LFREANVSVV---WEPAPSVEAIRE 380
           L       +      P  S E   E
Sbjct: 443 LHLFLGRKIAAASKAPPSSTEEALE 467


>gi|114687995|ref|XP_528902.2| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Pan
           troglodytes]
 gi|332860426|ref|XP_003317435.1| PREDICTED: probable ATP-dependent RNA helicase DDX53 [Pan
           troglodytes]
          Length = 631

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 166/372 (44%), Gaps = 7/372 (1%)

Query: 4   FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
           F+  P  + +++   G V  T +Q       L+  D++  AQTG+GKT+++ +     L 
Sbjct: 227 FQQYPD-LLKSIIRVGIVKPTPIQSQAWPIILQGIDLIEVAQTGTGKTLSYLMPGFIHLD 285

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
           ++       + P  L + PTR+LA+ V  E    Y+  G+      GG + + +  D+  
Sbjct: 286 SQPISREQRNGPGMLVLTPTRKLALHVEAECSK-YSYKGLKSICVYGGRNRNGQIEDISK 344

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  I++ TPGRL D      +N+  +  +V+DEAD+MLD+ F   I  IL      R+ +
Sbjct: 345 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIMKILLDVRPDRQTV 404

Query: 184 MFSATISPAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           M SAT    +  LA +Y +   +           + +    ++    ++       +   
Sbjct: 405 MTSATWPDTVRQLALSYLKDPMMVYVGNLNLVAVNTLKQNIIVTTEKEKQALTQEFVENM 464

Query: 243 GA-KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F S +      +           +L G   Q +R  A++  + G  ++ I T
Sbjct: 465 SPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDRERAVEDFKSGNIKILITT 524

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+ ++G+DL D+  V + +   N +  +HR G  GR G+ G SV +I Q   + A  L +
Sbjct: 525 DIVSQGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIK 584

Query: 362 ---EANVSVVWE 370
               AN SV  +
Sbjct: 585 ILDRANQSVPED 596


>gi|91092300|ref|XP_969217.1| PREDICTED: similar to CG8611 CG8611-PA [Tribolium castaneum]
          Length = 624

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 103/432 (23%), Positives = 181/432 (41%), Gaps = 21/432 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + +   L +  +VNLT+VQE  +   L  K+VL+ +QTGSGKT+A+ L + 
Sbjct: 129 KKFSDLQIHKYLVANLQKHSFVNLTNVQERAIPEILAGKNVLIRSQTGSGKTLAYALPIM 188

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + LL+   R        A+ + PTRELA+Q       +     +V+    GG +   E+ 
Sbjct: 189 NALLSVEPRLQRQDGVQAIIVVPTRELALQTHEIFGKINTFQWLVIGHLCGGENRKTEKD 248

Query: 120 DLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDI--------- 169
            L+ G H+V+GTPGRL DHI         ++K +VLDEAD +LD+GF+ DI         
Sbjct: 249 KLRKGVHVVIGTPGRLLDHILHTSAFKTENVKCLVLDEADRLLDMGFKKDIVKIVEALDR 308

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             +               +      +         D             + +    ++  
Sbjct: 309 TKQKRQTILLSATLNKGIAELADFLMKNHTYIDTLDDSPDINPDHMVIPNTVTQEFIMTH 368

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN-- 285
           +  R   +  +L         VF +T       +    E + +        +  + +   
Sbjct: 369 IKHRLFTLSAVLLAKAKHKVFVFMATSQMDFEDSDEEEEVVLESEFFKLHGNMDQGARKK 428

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                +  +  + + TDVAARG+D+P+ + +I      + ++ LHR GRTGRAG+ G S+
Sbjct: 429 VFMGFKAAKRGILLCTDVAARGVDVPEADCIIQYTGPQSDDDYLHRVGRTGRAGKSGSSL 488

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
             +    Q    RL       V  +   S E +  +    ++++P    +    +++   
Sbjct: 489 IFLTHEEQEYIARLQDH---KVFLKERQSSEFL--KHLCTLMEEPEEEKAATALQRRFET 543

Query: 406 VLLAKHDPEKIA 417
            L    D  ++A
Sbjct: 544 ALTKDKDLHRLA 555


>gi|18310498|ref|NP_562432.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
           perfringens str. 13]
 gi|18145178|dbj|BAB81222.1| probable RNA helicase [Clostridium perfringens str. 13]
          Length = 407

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 184/366 (50%), Gaps = 9/366 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + ++L   G    T +QE  +   L  K+V+  A+TG+GKT+A+ L +   +    
Sbjct: 11  LSEEVLKSLVGLGIEEPTDIQEKAIPEILSGKNVIGKAETGTGKTLAYLLPIIEKIDDSK 70

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRERRDLQNG 124
           +         A+ ++PT EL VQ+   L  L    G  +     +G  ++ R+   L+N 
Sbjct: 71  NEM------QAIILSPTHELGVQINNVLNDLKRGLGKKITSTTLVGSGNIKRQIEKLKNK 124

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGT GR+ + I  K +  + +K +V+DE D++LD     D+  ++ S P+  + L+
Sbjct: 125 PHILVGTTGRILELINKKKITTNTIKTIVIDEGDKLLDFINIKDVRSVVKSCPRDTQKLI 184

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-G 243
           FSAT++      A      +  +   + N+ + +I++    V L D+ + +  ++     
Sbjct: 185 FSATMNEKALETADELIGISELIQAKAANKVNENIEHGYFQVELRDKIDFLRKLIHAIGD 244

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            K  IVF +   +V    + L  +  + V+L G  ++ ER  ALQ  R G+A+V I +DV
Sbjct: 245 EKKIIVFINNSYNVHNVIQKLKYNKIEAVSLHGSDNKMERKKALQDFRSGKAKVLITSDV 304

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           +ARG+D+     +++ ++  N +N LHR GR GRAG KG +  +     ++   +  R+ 
Sbjct: 305 SARGLDIKGATHIVNLDIPMNSQNYLHRVGRVGRAGEKGFAYSLADYKEEKIIVKCERQL 364

Query: 364 NVSVVW 369
            + +  
Sbjct: 365 KIKIPR 370


>gi|258423211|ref|ZP_05686104.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
 gi|257846661|gb|EEV70682.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A9635]
          Length = 448

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 103/449 (22%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      +     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHISQFKAGVSVEVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|325088148|gb|EGC41458.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus H88]
          Length = 805

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 368 SGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 427

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 428 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYS 487

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 488 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 547

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
           +        +    +     +    +  + +                             
Sbjct: 548 QKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 607

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 608 VDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 667

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 668 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 727

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 728 RTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 778


>gi|196006533|ref|XP_002113133.1| hypothetical protein TRIADDRAFT_56998 [Trichoplax adhaerens]
 gi|190585174|gb|EDV25243.1| hypothetical protein TRIADDRAFT_56998 [Trichoplax adhaerens]
          Length = 533

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 185/378 (48%), Gaps = 8/378 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I +   +A+S+  + N+T +Q   +   L  +DVL +A+TGSGKT+AF +     L   N
Sbjct: 104 ISENTIKAISDMSFTNMTQIQHKTIPHLLMGRDVLGAARTGSGKTLAFLIPAVELLHKLN 163

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
             F P +    + I+PTREL++Q       L         + +GG +   E   LQ G +
Sbjct: 164 --FMPRTGTGIIIISPTRELSLQTYGVARDLLKYHRYTFGLIMGGANRKTEAEKLQKGVN 221

Query: 127 IVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +++ TPGRL DH++        +L+ +++DEAD +L +GF D+++ I+   P +R+ +MF
Sbjct: 222 LLIATPGRLLDHLQNTNGFVSKNLQCLIIDEADRILQIGFEDEMKQIVRLLPSRRQTVMF 281

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNAIVNILRYH 242
           SAT +  +  LA+   K +       ++R  + +D      V+     R   +   L+ +
Sbjct: 282 SATQTRNVEDLARISLKKSPLYIGVDDDRDVATVDGLEQGYVVCPSDRRFLLLFTFLKKN 341

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV   +++L      V  + G   QQ+R+       + +  + + TD
Sbjct: 342 RNKKVMVFFSSCNSVKFHSELLNYVDLAVTDIHGRQKQQKRTATFFDFCNAKEGILLCTD 401

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK-GMSVFVIPQNMQRRAERLFR 361
           VAARG+D+P+++ ++  +   +P+  +HR GRT R     G ++  +         R  +
Sbjct: 402 VAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGENSRGHALLFLMPEELAFL-RYLK 460

Query: 362 EANVSVVWEPAPSVEAIR 379
            A V +      S + + 
Sbjct: 461 HAKVPLSEYEFASTKVVN 478


>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 442

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 115/446 (25%), Positives = 198/446 (44%), Gaps = 25/446 (5%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM---LMFSATISP 191
           L DHI  + L +S L+ ++ DEAD +LDLGF + ++ I + +  + R       +   + 
Sbjct: 134 LADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRLRQTLLFSATLDHAQ 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                    +K       A+  +         +   L  ++  + + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR+  SR ++ L    F+ VAL+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRSDTSRLSEALNAKGFKSVALAGDLTQNKRLDIMDSFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++          +    N  + +  
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNAISLVGPKDWASYLAIKAFLNDELKFAS 373

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAP 431
             S++A                   +G ++K  +    K   ++ AA   +        P
Sbjct: 374 VESLKA-----------------KFKGLKEKKPEAAWDK--SKEKAAAVKKPAFKRKAKP 414

Query: 432 EEIT-PVSLVSGRDRFRDDSRAFKVG 456
           ++ T P+      D      R  K  
Sbjct: 415 KKPTAPIKAPMNIDGDTPMRRKKKPE 440


>gi|189237234|ref|XP_970515.2| PREDICTED: similar to eukaryotic initiation factor 4A [Tribolium
            castaneum]
          Length = 1983

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 195/374 (52%), Gaps = 7/374 (1%)

Query: 6    NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +   
Sbjct: 1616 NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQQID-- 1673

Query: 66   NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 1674 ----TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 1729

Query: 126  HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 1730 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 1789

Query: 186  SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGA 244
            SAT+   +  + K++ ++ VR+ +  E      I      +     +   + ++      
Sbjct: 1790 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 1849

Query: 245  KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 1850 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 1909

Query: 305  ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
            ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++  + +  +R  + + +  N
Sbjct: 1910 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIEQFYN 1969

Query: 365  VSVVWEPAPSVEAI 378
              +   P    + I
Sbjct: 1970 TKIDEMPMNVADLI 1983


>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
          Length = 990

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 188/385 (48%), Gaps = 14/385 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F       VI   L +  Y   T +Q+  +   +  +D++  AQTGSGKT +F L +
Sbjct: 516 MESFTEVKFSDVIMTNLRKTKYEKPTPIQKWAVPVIISGRDMMGCAQTGSGKTASFLLPM 575

Query: 59  ASTLLAENDRFSPAS----APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +L               PL L +APTREL +Q+  E       T V   V  GGVS 
Sbjct: 576 LTKMLGTGFEPPCVEDGCAMPLMLVLAPTRELVLQIFHETRKFSFDTVVRAVVAYGGVSS 635

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI----- 169
             + +++  GAHIV+ TPGRL D    K +N+  LK +VLDE D MLD+GF   I     
Sbjct: 636 SYQEKEILKGAHIVIATPGRLIDFFGKKRINLCKLKYLVLDEVDRMLDMGFHTAIASILS 695

Query: 170 --EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
             E  + S   ++ ++  +          AK  ++D + + +      + DI+   +L+ 
Sbjct: 696 QGESGMPSVNNRQTVVFSATIPEEVQKLAAKLLREDYIFITVGCIGSANLDIEQYVLLME 755

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             ++ + ++ I++  G    IV    +      +  L++  F   ++ G L+QQER  AL
Sbjct: 756 QENKRDKLLEIVQKRGEDKIIVSVEEKRMADFISAFLSQASFPTASIHGNLTQQEREKAL 815

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-F 346
           +  R G + + +AT+VAARG+D+P+++ VI+ ++  + E  +HR GR GR G  G +  F
Sbjct: 816 RDFRSGVSPILVATNVAARGLDIPEVKHVINYDMPPHIEEYVHRIGRPGRCGNTGKATAF 875

Query: 347 VIPQNMQRRAERLFREANVSVVWEP 371
            + +     A  L +  + ++   P
Sbjct: 876 FVAEADNHLARSLVKVLSDALQEVP 900


>gi|293503439|ref|ZP_06667286.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095105|gb|EFE25370.1| helicase [Staphylococcus aureus subsp. aureus 58-424]
          Length = 448

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 207/449 (46%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            +++FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIVVFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|225559088|gb|EEH07371.1| pre-mRNA-splicing ATP-dependent RNA helicase PRP28 [Ajellomyces
           capsulatus G186AR]
          Length = 805

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 189/411 (45%), Gaps = 34/411 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   + + GY + + +Q A +   L+ +D++  A TGSGKT AF L L   +  
Sbjct: 368 SGLPKRLLSIVEQVGYTDPSPIQRAAIPIALQNRDLIGVAVTGSGKTAAFLLPLLVYIAE 427

Query: 65  ----ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 428 LPRLDEFEWRRNDGPYAIILAPTRELAQQIEIEAKKFSVPLGFNVVSIVGGHSLEEQAYS 487

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + + +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 488 LRNGAEIIIATPGRLVDCIERRMIVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTN 547

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ------------------------- 215
           +        +    +     +    +  + +                             
Sbjct: 548 QKPDTEDAENAQAMSQHIGGKDRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGNIGEA 607

Query: 216 HSDIDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
              ++ R   ++  D+    +  +          IVF + + +     + +    +  V 
Sbjct: 608 VDTVEQRVEFISGEDKRKKRLAEILSSREFRPPIIVFVNIKRNCDAVARDIKNMGYSSVT 667

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  +++N E+  HR G
Sbjct: 668 LHGSKTQEQREAALASVRNGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIG 727

Query: 334 RTGRAGRKGMSVFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
           RTGRAG+ G+++  +           +++  ++++S V E     EA + +
Sbjct: 728 RTGRAGKSGIAITFLGNEDSDVLYDLKQMLMKSSISRVPEELRKHEAAQSK 778


>gi|170594503|ref|XP_001902003.1| ATP-dependent RNA helicase P62 [Brugia malayi]
 gi|158590947|gb|EDP29562.1| ATP-dependent RNA helicase P62, putative [Brugia malayi]
          Length = 587

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 177/377 (46%), Gaps = 16/377 (4%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           IFE      P  I E L +  +   T +Q       L   D++  A+TGSGKT+A+ L  
Sbjct: 187 IFEFSETGFPPAIIEKLKKACFEKPTVIQSISWPVALTGHDMISIARTGSGKTLAYTLPG 246

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  + ++      P  L +APTRE    + +++  +       VA   GG    ++ 
Sbjct: 247 IVHMQNQ-EQPEKVRGPAVLILAPTRE----LVQQISSMAMNFHSKVACAYGGSGRDQQA 301

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R ++ G  I+   PGRL D +    LN++    +VLDEAD MLD+GF   I  I+     
Sbjct: 302 RTIREGVDILAAAPGRLLDFLIAGVLNLNRCTYLVLDEADRMLDMGFEPQIRRIVSMIRP 361

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LMFSAT    + TLAK++  D V VN+ S     N     +          ++   
Sbjct: 362 DRQTLMFSATWPKEVRTLAKDFLSDPVFVNVGSLKLAANSNIIQLVTVVEENEKEEKLLE 421

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +N          ++F   + +    T+++ +  +  ++L G+ SQ ER+  +   ++G 
Sbjct: 422 FLNRTSSEQHCKTLIFVGMKRTADWLTRLIRKKGYPALSLHGDKSQTERNFVMNDFKNGE 481

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARG+D+ D++ VI+ +   N E+ +HR GRT R  + G S  +  ++   
Sbjct: 482 CSILVATDVAARGLDVNDIKYVINFDCPKNIEDYIHRIGRTARHDKTGTSYTLCTRSDAP 541

Query: 355 RAERL---FREANVSVV 368
               L    +EA  +V 
Sbjct: 542 IVNELVSVLKEAKQTVP 558


>gi|329941301|ref|ZP_08290580.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329299832|gb|EGG43731.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 503

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 123/375 (32%), Positives = 184/375 (49%), Gaps = 11/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L   G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 80  DMPAALLAELGRNGLTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR---T 136

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R +    PL L + PTRELA QV   L        + +A  +GGVS+  + R L+ GA
Sbjct: 137 AGRRAEPRQPLGLVLVPTRELAQQVTEALTPYARAVRLRLATVVGGVSIGGQMRALRGGA 196

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            IVV TPGRL D I   G  +  +   VLDEAD+M D+GF   +  +LD    + + ++F
Sbjct: 197 EIVVATPGRLKDLIDRGGCVLDQVSVTVLDEADQMADMGFMPQVTALLDQVDAQGQRMLF 256

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 257 SATLDRNVDALVRRYLHDPVVHSVDPSAGAVTTMEHHVLHVHGADKHE--ATTRIAAREG 314

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R T  L     +  AL G  SQ +R+  L   R G   V +AT+VAA
Sbjct: 315 RVIMFLDTKHAVDRLTAHLLGSGVRAAALHGGKSQPQRTRTLAQFRTGHVGVLVATNVAA 374

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI +  L+LV++ +  S+ ++ LHR GRT RAG  G  V ++  + +R   RL   A +
Sbjct: 375 RGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTLVTPDQRRAMTRLMAAAGI 434

Query: 366 SVVWEPAPSVEAIRE 380
                  P+   +R 
Sbjct: 435 ------VPTTTEVRS 443


>gi|325969103|ref|YP_004245295.1| DEAD/DEAH box helicase [Vulcanisaeta moutnovskia 768-28]
 gi|323708306|gb|ADY01793.1| DEAD/DEAH box helicase domain protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 364

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 11/354 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F  + + +  AL + G+   T +Q  ++   L+  ++ + A+TGSGKT A+ L + +++
Sbjct: 4   VFNELREELRRALFDFGFERPTEIQCLVIPRALKGVNIAMQARTGSGKTAAYLLPIMNSM 63

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           +             +L I PTRELA+QV  +  +     G   AV  GGV    +   + 
Sbjct: 64  V--------GKVTESLVIVPTRELALQVASQFTYFNKYLGFRHAVVYGGVPYDEQISSV- 114

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
             A +VV TPGRL D +R   +++  +   V+DE D MLD+GF DD+  I   +  +++ 
Sbjct: 115 RDASLVVATPGRLLDLVRKSYIDLGRVNYFVIDEVDRMLDMGFIDDVRVISSLAHNRKQA 174

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +AT+   +  L ++  ++ V +   S   +   ++    L+     +   V      
Sbjct: 175 YAATATLPREVYELLRSIMRNPVFLRTGSHEYELPHVEQIVYLINGFWSEKYSVM--TKE 232

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
            A  +IVF +TR    +  + L+   + ++   G           +   +    V + TD
Sbjct: 233 LAGKSIVFTNTRERAYKLHRQLSREYYALLLHGGMKQYMRERVLRRFRDEDGNIVLVTTD 292

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           +A+RG+D+ D+EL+I+ ++ +NPE  +HR GRT R  R+G +V +  +N  +  
Sbjct: 293 LASRGLDIIDVELIINFDVPNNPETYIHRIGRTARLDRRGRAVTLATKNELQVI 346


>gi|259501305|ref|ZP_05744207.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
 gi|302190971|ref|ZP_07267225.1| superfamily II DNA/RNA helicase [Lactobacillus iners AB-1]
 gi|259167275|gb|EEW51770.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners DSM 13335]
          Length = 462

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 202/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 12  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 71

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 72  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 125

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            +   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 126 NSAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 186 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 246 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 306 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 365

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 366 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 424

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 425 AIQADRQQKKKI--EERIKARKQKRQRKRERDRLRED 459


>gi|329666845|gb|AEB92793.1| putative RNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 461

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF+N  I   +   L +  +   T VQ +++   L +K+V+V A TGSGKT A+ + + 
Sbjct: 6   SIFQNEKIRPELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +              A+  AP+RELA Q+ +    L   +G+ +++     G     +
Sbjct: 66  NMIDESAP------VTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQ 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +       +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+   
Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKL 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            KK  +  FSATI   +    + Y      + I +       I    + V   D+ + + 
Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILY 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +
Sbjct: 240 KLLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVTKIHGGITERERKRIIRQVREGQYQ 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I  +   + 
Sbjct: 300 YVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQI 359

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           E L +   ++  ++   + E +      R
Sbjct: 360 EDLEK-LGINFDFKDLRNGELVERTHYHR 387


>gi|302692416|ref|XP_003035887.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
 gi|300109583|gb|EFJ00985.1| hypothetical protein SCHCODRAFT_65679 [Schizophyllum commune H4-8]
          Length = 620

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 110/391 (28%), Positives = 188/391 (48%), Gaps = 17/391 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  IP+ I + L  +  ++ T +Q   +      +D++  A TGSGKT+AF L L   
Sbjct: 185 FEDMKIPRGILDYLKSKRIIDPTPIQIQGIPTAFSGRDIIGIAFTGSGKTLAFCLPLIMF 244

Query: 62  LLAENDR--FSPASAPLALAIAPTRELAVQVGRE-------LEWLYAKTGVVVAVCIGGV 112
            L E  +  F     P+ + + P+RELA Q           L        +   +CIGG+
Sbjct: 245 ALEEEMKLPFVRGEGPVGVILCPSRELANQTYENVLAWCEALAKEGRYPQLNTLLCIGGI 304

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           S++ +   +  G HIV+ TPGRL D +  K L  ++ K + +DEAD M+DLGF +D+  I
Sbjct: 305 SMNDQAHVMSKGIHIVIATPGRLIDMLEKKRLTFNNCKYMCMDEADRMVDLGFEEDVRNI 364

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           +    ++R+ L+FSAT+   I   A+      + +N+      + D+      V    + 
Sbjct: 365 MSYFKRQRQTLLFSATMPQKIRDFAQQSLIQPILINVGRAGAANLDVLQVVEYVKQEAKM 424

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+       I+F   +  V    + L     + VA+ G  SQ+ER  A++  + 
Sbjct: 425 VYLLECLQKTPPP-VIIFSENKNEVDDIQEYLLLKGVEAVAIHGSKSQEERQYAIKSFKS 483

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---- 348
           G   V +A+ VA++G+D  +++ VI   +    E+ +H+ GRTGR+G+ G++   +    
Sbjct: 484 GAKDVMVASGVASKGLDFNEIQHVIIFTMPKEIEDYVHQIGRTGRSGKTGIATTFVNMNT 543

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           P+      + L  EA   V      S+E  R
Sbjct: 544 PEQTLLDLKYLLMEAGQKVPPF-LASIEDPR 573


>gi|84394007|ref|ZP_00992745.1| DNA and RNA helicase [Vibrio splendidus 12B01]
 gi|84375344|gb|EAP92253.1| DNA and RNA helicase [Vibrio splendidus 12B01]
          Length = 412

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 117/351 (33%), Positives = 186/351 (52%), Gaps = 6/351 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q+A++   +  KDVL  AQTGSGKT+AFGL L + +  +       +   AL 
Sbjct: 20  FDKPTEIQQAVIPSIIAGKDVLALAQTGSGKTLAFGLPLLNNINHD------VNGLQALI 73

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I PTRELA QV   LE +     + +    GGV+   +++ L     + + TPGRL   I
Sbjct: 74  IVPTRELASQVTESLEPVATALNIKLVTLTGGVNTDDQQQQLLTQPQLAIATPGRLLALI 133

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   L+++   ++VLDEAD ++D+GF  DI+ I  + P KR+ L+FSAT+   + + A+ 
Sbjct: 134 KSSELDVTQCVSLVLDEADRLIDMGFWPDIQAITAALPSKRQSLLFSATLPSELVSQAEL 193

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              + V+V+   EN   + I+    LV    +  A++ +L  H     +VF   + +   
Sbjct: 194 LLSNPVKVSTHQENSVVATIEETLYLVNKGSKAQALIALLNQHTWPQVLVFIGAKDNADA 253

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            TK L +    V AL G  SQ+ER  AL+  ++G  RV IATDV ARGI +  L +VI+ 
Sbjct: 254 LTKRLNKSKINVSALHGNKSQEEREQALESFKNGETRVLIATDVMARGIHIDQLPVVINF 313

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           +L ++    +HR GRT RAG  G ++ ++  +       +    N  +V +
Sbjct: 314 DLPTHSATYVHRVGRTARAGSTGCAISLVSHSETDYLNAIRTLTNKPLVLQ 364


>gi|255954845|ref|XP_002568175.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589886|emb|CAP96040.1| Pc21g11430 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 496

 Score =  166 bits (420), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 21/396 (5%)

Query: 3   IFENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F+++P+    +   L    +   T +Q          +DV+  A+TGSGKT+ FGL   
Sbjct: 82  SFDHLPECDVGLYTQLKS--FPAPTPIQSTTWPLLFAGRDVIGIAETGSGKTLGFGLPCL 139

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+  + + S    P A+ I+PTRELA+Q+  +L             CI G     E+R
Sbjct: 140 KKLI--DSKSSKPCQPKAVIISPTRELAMQIYDQLVKFGH-HEKTQVTCIYGGVGKDEQR 196

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                A IVV TPGRL D      +++  +  +VLDEAD MLD GF  DI+ IL   P  
Sbjct: 197 RALQKAAIVVATPGRLKDLQNDGSIDLGKVNYLVLDEADRMLDKGFEQDIKDILKPMPVS 256

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           RR  +      P                     + +++ R ++ I     +V   +++  
Sbjct: 257 RRQTVMFTATWPRSVRDLAATFMKTPVTVTIGGDPSADPRANTRIKQVVEVVDGREKEGR 316

Query: 235 IVN-----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +V             +  +VFC  +    R   ++    F V  + G+L+Q +R   L  
Sbjct: 317 LVQLLTKSQRGQKSPEKVLVFCLYKKEAMRIENLIRNKGFAVAGIHGDLNQSDRFRNLDA 376

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G A V IATDVAARG+D+P+++LVI+       E+ +HR GRTGRAG  G+++ +  
Sbjct: 377 FKKGNATVLIATDVAARGLDIPNVKLVINVTFPLTVEDYVHRIGRTGRAGADGLAITMFT 436

Query: 350 QNMQRR---AERLFREANVSVVWEPAPSVEAIRERD 382
           +N +        + + AN  V  +       ++++ 
Sbjct: 437 ENDKGLSGGLINVLKAANQDVPEDLLKFGTTVKKKQ 472


>gi|330826208|ref|YP_004389511.1| DEAD/DEAH box helicase domain-containing protein [Alicycliphilus
           denitrificans K601]
 gi|329311580|gb|AEB85995.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
           K601]
          Length = 590

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 120/418 (28%), Positives = 188/418 (44%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T+VQE  +   +       +  D++VS+QTGSGKT AF L + 
Sbjct: 38  LAPELVQAVADLGYTQPTAVQEKAIPLAMGAADVAGRFIDLMVSSQTGSGKTAAFLLPVL 97

Query: 60  STLLAE------------------------------------NDRFSPASAPLALAIAPT 83
            TL+ +                                    + R   A+ P AL + PT
Sbjct: 98  HTLIQQQADADAAARAEFERAAADAAARGEAPPKRSKRKNPTHPRNFKAATPGALVLCPT 157

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A++VV TPGRL D  R   
Sbjct: 158 RELAQQVAHDAIELVKHCKGLRIANVVGGMPYQLQIARLQNANLVVATPGRLLDLQRSMQ 217

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     +
Sbjct: 218 IKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSERKQTMMFSATFAPRIQQLAMRVMHE 277

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                        + +  +             +   + + LR      AIVF ST+    
Sbjct: 278 GGASVKKVQIDTPQEKHANIKQMLYWADNAQHKRKLLDHWLRDASIGQAIVFASTQVECD 337

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 338 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPSITHVFN 397

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR G++V       +R+   +   +      E    +E
Sbjct: 398 FGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKAEVVAGLE 455


>gi|164423323|ref|XP_964893.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
 gi|157070045|gb|EAA35657.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
          Length = 434

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 177/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   D++  A++G GKT  F L     +    
Sbjct: 57  LKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVA 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++ +
Sbjct: 117 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKE 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 171 THPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I  + + + ++     +  + +       +  +      ++  +  +L 
Sbjct: 231 VMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 291 ELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+++  +  +  +   + +
Sbjct: 351 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKEVLKAI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 411 EKRFEVALPEFPKEGIDA 428


>gi|27881976|gb|AAH44541.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog,
           yeast) [Danio rerio]
          Length = 487

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 159/392 (40%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 99  VKSFEELRLKPQLLQGVYAMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVL 158

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-H 115
           A+ S +  EN        P  L ++PT ELA+Q G+ +E +      V  V     +   
Sbjct: 159 AMLSHVDPENKW------PQCLCVSPTYELALQTGKVIEQMGKHYPEVQLVYAIRGNKLE 212

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R  +  +       GT    C  ++        +  +   +            I      
Sbjct: 213 RGTKLQEQIVIGTPGTVLDWCQKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 272

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   Y  +  +  ++  A+
Sbjct: 273 PKTCQMLLFSATFEETVWNFAKRIVPDPNIIKLKREEETLDTIKQYYVICNSKEEKFQAL 332

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR +       L+    QV  LSGE+  ++R+  ++  RDG+ 
Sbjct: 333 CNIYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIERFRDGKE 392

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++ 
Sbjct: 393 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVD 452

Query: 350 QNM-QRRAERLFREANVSVVWEPAPSVEAIRE 380
                    R+    N  +       ++ I +
Sbjct: 453 SKFSMNILNRIQDHFNKKIEKLDTDDLDEIEK 484


>gi|56461231|ref|YP_156512.1| ATP-dependent RNA helicase SrmB [Idiomarina loihiensis L2TR]
 gi|56180241|gb|AAV82963.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
          Length = 409

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 99/375 (26%), Positives = 174/375 (46%), Gaps = 6/375 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L +        VQ+  +   L  +D+L+SA TG+GKT+AF L     LL +
Sbjct: 9   DLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTGTGKTLAFLLPALQHLL-D 67

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P  A   L +APTRELA Q+  + +   AKTG+   V  GG++   +   L+   
Sbjct: 68  FPRQQPGPA-RILVLAPTRELAEQIHEQAKQFEAKTGLTSVVVTGGINYGSQLSVLEKTH 126

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL D +  +  N+  ++ +++DEAD MLD+GF   ++ +   +  +++ L+ 
Sbjct: 127 DILVATPGRLMDLLEAEQYNLEGIEWLIIDEADRMLDMGFAATVKEMALQARHRQQSLLL 186

Query: 186 SATISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           SAT++ +                      R+   I     L    +    ++  +     
Sbjct: 187 SATLNSSGVIKFSRELLTEPEYIDVQPPKRERGKILQWVHLADTDEHKRKLLMSVLQAHP 246

Query: 245 KNAIVFCSTRASVS---RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               VF  TR  V     F +       ++V L G++ Q +R   +  ++       +AT
Sbjct: 247 GRQFVFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTEITLVAT 306

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ D+ LV++ +L    +  LHR GRT R G+KG +V ++  +      R+ R
Sbjct: 307 DIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAVSLVEAHDALLLGRVER 366

Query: 362 EANVSVVWEPAPSVE 376
             +  +       ++
Sbjct: 367 YLDAKLDRRTIEGLK 381


>gi|327277814|ref|XP_003223658.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like [Anolis
           carolinensis]
          Length = 619

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 96/405 (23%), Positives = 194/405 (47%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P V+   L + GY   T VQ  ++   L  +D++ +A TGSGKT AF L +   
Sbjct: 204 FEHCSFPDVLSSNLKKSGYEVPTPVQMQMIPVGLLGRDIVATADTGSGKTAAFLLPVIIK 263

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            + E        AP AL + PTRELA+Q+ ++ +  +     +   + +GG+ +  +   
Sbjct: 264 AMGE------VEAPSALILTPTRELAIQIEKQAKELMVGLPNMRTVLLVGGLPLPPQLHR 317

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL + ++   + + ++K VV+DEAD ML +GF+  +  IL++ P+  
Sbjct: 318 LKQNVKVIIATPGRLLEILKQSSVELHNIKIVVVDEADTMLKMGFQQQVLDILENIPRDH 377

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SAT+   I  LA    ++ V++ I  +N+  S++          +   +   I+N
Sbjct: 378 QTILVSATMPFGIEQLANRLLQNHVKITIGEKNQPCSNVRQIILWVEEPSKKKKLFEILN 437

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  + +Q ER+  LQ +   +  V
Sbjct: 438 DKKLFKPPILVFVECKLGADLLSDAVHKITGLETISMHADKTQTERNTILQGLFQEKYEV 497

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T +  RG+DL +++LV++ ++ S+ +  +H+ GR GR G  G ++  I  N ++   
Sbjct: 498 VVSTGILGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFW 557

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + ++++
Sbjct: 558 DVVKRVKPTGTILPP------------QLLNSPYLHDQKRKEQQR 590


>gi|190702284|gb|ACE75181.1| ATP-dependent RNA helicase [Glyptapanteles flavicoxis]
          Length = 796

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 116/396 (29%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF + L   +  
Sbjct: 373 SGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITS 432

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R   A   P ++ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 433 LPKIERLEEADQGPYSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRL 492

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 493 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 552

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 553 KPDNEDAENEEKLLANYNTKKKYRQTVMFTATMPPAVERLARTYLRRPAMVYIGSVGKPT 612

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       + L +  F    L G
Sbjct: 613 ERTEQIVHIMGEADKRRKLMEILHRGVEPPVIIFVNQKKGADVLARGLEKIGFNACTLHG 672

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 673 GKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 732

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RAG+ G+++    ++       LF +   +++  P 
Sbjct: 733 RAGKAGLAISFCTKDDSH----LFYDLKQTILGSPI 764


>gi|15924548|ref|NP_372082.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927138|ref|NP_374671.1| hypothetical protein SA1387 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979876|ref|YP_001442135.1| hypothetical protein SAHV_1545 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006344|ref|ZP_05144945.2| hypothetical protein SauraM_07745 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|13701356|dbj|BAB42650.1| SA1387 [Staphylococcus aureus subsp. aureus N315]
 gi|14247329|dbj|BAB57720.1| ATP-dependent RNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722011|dbj|BAF78428.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 448

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 104/449 (23%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKDKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|302818333|ref|XP_002990840.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
 gi|300141401|gb|EFJ08113.1| hypothetical protein SELMODRAFT_11027 [Selaginella moellendorffii]
          Length = 583

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 160/384 (41%), Gaps = 18/384 (4%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             I   I  A+ E GY   T +Q A +   L+++DV+  A TGSGKT AF + +   +  
Sbjct: 190 SGICPEILRAVQEAGYKKPTPIQMASIPLGLQQRDVIGIAGTGSGKTAAFVIPMLMYVSR 249

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           L +         P AL +APT ELA Q+  E   L     + V   + G ++  +   L 
Sbjct: 250 LPKMTLERAIEGPYALVMAPTTELAQQIQEETVKLAKYMDINVLSLVAGEAIGGQSSKLL 309

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  IV+ TPGRL   +      +     VVLDE D M+ LGF + +   L++ P     
Sbjct: 310 QGCEIVIATPGRLLHCLEQGYAVLHQCNYVVLDEGDRMIALGFEEQVIDALEAMPSSNMK 369

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIAS-------------ENRQHSDIDYRAVLVALS 229
                                 +   +                      I  + ++V   
Sbjct: 370 PESEDVELEDRIYRTTYMFSATMPPAVERLAKKYLRNPVVVTIEEMSKRISQKVIMVDEE 429

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           ++   +  +L   G  + IVF +T+    + +K L +   +V  + G  +QQ+R    Q 
Sbjct: 430 EKPKRLRRLLDELGEMSTIVFVNTKKQADKVSKQLHDMGIKVATIHGGKTQQKRQTNFQD 489

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R  R    IATDV  RGID+PD+  +++ ++ S  E  +HR GRTGRAG+ G +   + 
Sbjct: 490 FRSKRRSCLIATDVVGRGIDVPDVGHIVNYDMPSTVEMYIHRIGRTGRAGKSGAATTFLT 549

Query: 350 QNMQ---RRAERLFREANVSVVWE 370
            N        ++L       V  E
Sbjct: 550 LNDSEVFYDLKQLLVRTKNPVPPE 573


>gi|134057429|emb|CAK47767.1| unnamed protein product [Aspergillus niger]
          Length = 587

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 106/444 (23%), Positives = 188/444 (42%), Gaps = 38/444 (8%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQT--GSGKTVAFGL 56
           +K F++  +  ++ E +    Y   T +Q   +   L   D++  AQT  GSGKT AF +
Sbjct: 127 IKNFDDAGLHPIMRENIRLCRYEFPTPIQAYSIPAVLTGHDLISIAQTEEGSGKTAAFLI 186

Query: 57  ALASTLLAENDRF----------------SPASAPLALAIAPTRELAVQVGRELEWLYAK 100
            + S L+ +  +                 S  + PL L +APTREL+ Q+  E   L  +
Sbjct: 187 PVLSQLMGKAKKLAAPRPNIAAGYNSSADSVRAEPLVLIVAPTRELSTQIFDEARRLCYR 246

Query: 101 TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADE 159
           + +   V  GG  V  +R +LQ G  I++ TPGRL D +    + ++  +K  ++DEADE
Sbjct: 247 SMLRPCVVYGGAPVRDQREELQRGCDILIATPGRLLDFMDKPHILSLRRVKYTIIDEADE 306

Query: 160 MLDLGFRDDIEFIL-----DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
           +L   +  D   I+     +     R M+  +               +D VRV I     
Sbjct: 307 LLQSDWESDFAKIMSGGDINEDADHRYMMFSATFNKDCRKLARNYLAEDHVRVRIGRPGS 366

Query: 215 QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            H+++D   +      +   + ++L        ++F +++         L        ++
Sbjct: 367 THANVDQNIIYAEPPLKKQCLYDLLLAMPPSRTLIFVNSKTQADFLDDYLYNMGLPSTSI 426

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLH 330
             + +Q+ER +AL+  R  +  + +AT V+ARG+D+ ++  V++ +L           +H
Sbjct: 427 HSDRTQREREDALRAFRTAKCPILVATGVSARGLDIKNVMHVVNFDLPRVQHGGITEYVH 486

Query: 331 RSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQD 389
           R GRT R G +G++       N    A  L     V ++ E   +V    E  + R   D
Sbjct: 487 RIGRTARIGNEGLATSFYNHDNDADLAPDL-----VKLLIENKQTVPDFLE--SYRPSDD 539

Query: 390 PLFLDSIQGDEKKMVDVLLAKHDP 413
            +  D    DEK   +      D 
Sbjct: 540 VVKFDDDTDDEKSGEENNNGDTDA 563


>gi|311111123|ref|ZP_07712520.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
 gi|311066277|gb|EFQ46617.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
           gasseri MV-22]
          Length = 461

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 185/384 (48%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E I   +   L +  +   T VQ A++   L  K V+V A TGSGKT A+ L L + +  
Sbjct: 11  EKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDE 70

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDL 121
                       A+  AP+RELA Q+ +    L   +G+ +++     G     +  +  
Sbjct: 71  NAP------VTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQIEKAE 124

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+    KK  
Sbjct: 125 NRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDKKVV 184

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +    + Y      + I +       I    + V   D+   +  +L  
Sbjct: 185 LGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEILYKLLTM 244

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +  +A+
Sbjct: 245 GQPYLALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVAS 304

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I      + E L +
Sbjct: 305 DLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQIEDLEK 364

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 365 -LGIHFDFKEIKNGELVERTHYHR 387


>gi|47206563|emb|CAF94489.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 490

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 157/391 (40%), Gaps = 17/391 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           ++ FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 103 VRSFEELRLKPQLLQGVYSMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVL 162

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +            P  L ++PT ELA+Q G+ +E +      V  V     +   
Sbjct: 163 AMLSHVDPSK------KYPQCLCVSPTYELALQTGKVIEQMGQYYSEVKLVYAIRGNKMP 216

Query: 117 E-RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +  +       GT    C   +        +  +   +            I      
Sbjct: 217 KGTKLQEQIVIGTPGTVLDWCGKFKFFDPKKIRVFVLDEADVMIDTQGHQDQSIRIQRML 276

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   Y  +  +  ++  A+
Sbjct: 277 PQSCQMLLFSATFEESVWKFAKRIVPDPNIIKLKREEETLDTIKQYYVLCNSREEKFQAL 336

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC TR +       L+    QV  LSGE+  ++R+  ++  RDG+ 
Sbjct: 337 CNIYGAITIAQAIIFCHTRKTAGWLAGELSRENHQVAVLSGEMQVEQRAAVIERFRDGKE 396

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++ 
Sbjct: 397 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVG 456

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
                  +++    N  +       ++ I +
Sbjct: 457 NTNMNILKKIQEHFNKKIEKLDTDDLDEIEK 487


>gi|49483807|ref|YP_041031.1| helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425683|ref|ZP_05602107.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428344|ref|ZP_05604742.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430981|ref|ZP_05607361.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433669|ref|ZP_05610027.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436583|ref|ZP_05612627.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904140|ref|ZP_06312028.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905967|ref|ZP_06313822.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908877|ref|ZP_06316695.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282911196|ref|ZP_06318998.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914365|ref|ZP_06322151.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282919334|ref|ZP_06327069.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282924659|ref|ZP_06332327.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|283958322|ref|ZP_06375773.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293510456|ref|ZP_06669162.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293530996|ref|ZP_06671678.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428136|ref|ZP_06820768.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590898|ref|ZP_06949536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|49241936|emb|CAG40630.1| putative helicase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271377|gb|EEV03523.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275185|gb|EEV06672.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278411|gb|EEV09047.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281762|gb|EEV11899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283934|gb|EEV14057.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313494|gb|EFB43889.1| helicase [Staphylococcus aureus subsp. aureus C101]
 gi|282317144|gb|EFB47518.1| helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282321546|gb|EFB51871.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324891|gb|EFB55201.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327141|gb|EFB57436.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282331259|gb|EFB60773.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595758|gb|EFC00722.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790471|gb|EFC29288.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920264|gb|EFD97330.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291466820|gb|EFF09340.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128494|gb|EFG58128.1| helicase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575784|gb|EFH94500.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312437973|gb|ADQ77044.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195460|gb|EFU25847.1| putative helicase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 448

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 206/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPEQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
 gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
          Length = 408

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 10/374 (2%)

Query: 1   MKIFE-NIPQVIGEAL-SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M   E N+   +  AL +E      T++Q+  +   L  +D+L  AQTGSGKT A+GL L
Sbjct: 1   MTFSELNLASSLLSALPAEL--HTPTTIQQLAIPVILSGRDLLALAQTGSGKTFAYGLPL 58

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               L              L I PTRELA QV + L  +     + V    GGV    ++
Sbjct: 59  LQKTLPMTPHI------QTLIIVPTRELATQVSQALGLIAKPMHIDVCPVCGGVDQQWQQ 112

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     ++V TPGRL D I  + +N+S L+ +VLDEAD +L++GF  D++ I+   P 
Sbjct: 113 DQLAQNPQLIVATPGRLLDLIEQQIINLSSLQHLVLDEADRLLEMGFWPDVQRIMAHLPA 172

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           K++ L+FSAT+ P +   A     D ++++    N+   +I+ +  LV    +   ++++
Sbjct: 173 KKQTLLFSATLLPELEEKALQPLNDPIKISANPPNQTVPEIEEQLYLVNKGSKAQVLIHL 232

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+ H     +VF S R +     K L +   +V AL G   Q ER   L   +  +  V 
Sbjct: 233 LKQHHWSQVLVFISARDNADALAKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVL 292

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           IATD+ ARGI +  L +VI+ +L  +P   +HR GRT RAG+ G+++ ++  N     + 
Sbjct: 293 IATDLLARGIHIEQLPVVINFDLPPSPAVYIHRVGRTARAGQTGLALSLVCHNENAILDA 352

Query: 359 LFREANVSVVWEPA 372
           + +     +V +  
Sbjct: 353 IRQLTQRPLVLQTL 366


>gi|156406516|ref|XP_001641091.1| predicted protein [Nematostella vectensis]
 gi|156228228|gb|EDO49028.1| predicted protein [Nematostella vectensis]
          Length = 620

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 108/402 (26%), Positives = 188/402 (46%), Gaps = 11/402 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  + + + LS  GY + T +Q  +L   L  +DV+V A TGSGKT +F L + S +   
Sbjct: 202 SFNESLSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGKTASFLLPMISRIHHI 261

Query: 66  NDRFSPASA----PLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRD 120
             +  P+S        L +APTREL +Q+ ++  E+++  T +  A+ IGGV V  +   
Sbjct: 262 TGKLLPSSPEVRFIYGLILAPTRELCMQIEKQTKEFVHGMTNMRTALLIGGVPVPPQLHR 321

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGR+ + I  + ++++H+   V+DE D ML LGF   ++ IL+    +R
Sbjct: 322 LKMGVQVIVATPGRMVEIISRQAVDLTHVIGCVVDEVDTMLQLGFEQQVQQILERLSNRR 381

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL--VALSDRDNAIVNI 238
           + ++FSATI P+I  +A       V ++  S +     +    +        +    +  
Sbjct: 382 QTMLFSATIPPSIEAMASRLLNAPVFISAGSPSLPTKAVKQLILWVEEKSKKKQLFSILK 441

Query: 239 LRYHGAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
              H    A+VF  ++         V      + +++ G+  Q ER+  LQ    G   +
Sbjct: 442 DSRHFNPPAVVFVESKLGADMLAEAVSKVCHIKCLSMHGDKPQAERAQILQDFLAGECPL 501

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL ++  VI+ ++    E  +H+ GR GR G  G S+  I    +    
Sbjct: 502 VVSTAVLGRGVDLLNIRQVINFDMPPTYEEYVHQIGRAGRLGATGWSISFINNASKGLFL 561

Query: 358 RLFREA---NVSVVWEPAPSVEAIRERDAQRILQDPLFLDSI 396
           +L  +     V +  E   S   + ER      +     D I
Sbjct: 562 QLINKLQPMGVKLPDELTRSAHVLDERRRASNSRKRAEKDEI 603


>gi|329940598|ref|ZP_08289879.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329300659|gb|EGG44556.1| DEAD-box RNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 497

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/382 (31%), Positives = 189/382 (49%), Gaps = 13/382 (3%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P+ +   L  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 71  FADLDMPEQLLAELGRQGVTAPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R  P   PL L + PTRELA QV   L        + +A  +GG+ + R+   L
Sbjct: 131 --TAGQRAEPRQ-PLGLILVPTRELAQQVTDALTPYARSVRLRLATVVGGMPIGRQAGAL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      ++H+   VLDEAD+M  +GF   +  +LD    + +
Sbjct: 188 RGGAEVLVATPGRLKDLIDRGECRLNHVDITVLDEADQMAGMGFMPQVTALLDQVRPEGQ 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 248 RMLFSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTQIA 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 306 ARDGRVIMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R+  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRVMS 425

Query: 362 EANVSVVWEPAPSVEAIRERDA 383
           +A +       P    IR  D 
Sbjct: 426 DAGIR------PQTTQIRSGDV 441


>gi|255564739|ref|XP_002523364.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223537452|gb|EEF39080.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 751

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 181/408 (44%), Gaps = 17/408 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  +  + + + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     ++   
Sbjct: 290 VSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPAIEVVVKSP 349

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEW--LYAKTGVVVAVCIGGVSVHRERRDLQ 122
              R       L + I PTRELA Q   E      Y  +  V  V  G      +++   
Sbjct: 350 PTGRDQKRPPILVVVICPTRELASQAAAEANTLLKYHPSVGVQVVIGGTRLALEQKKMQA 409

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DHI         +  +K ++LDEAD +LD+GFR DIE I+ + PK+
Sbjct: 410 NPCQILVATPGRLQDHIENTAGFATRLMGVKVLILDEADHLLDMGFRKDIERIIAAVPKQ 469

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---- 235
           R+ L+FSAT+   +  +     +                      +  ++  D       
Sbjct: 470 RQTLLFSATVPEEVRQICHIALRRDHEFINTVPEGTDETHTQVRQMHLVAPLDKHFPLLY 529

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
               + +  +     ++FC+T         +L E    V  +     Q  R+      R 
Sbjct: 530 VLLKDHIADNIDYKVLLFCTTAMVTRMVANLLGELKLNVREIHSRKPQSYRTRVSDEFRK 589

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + +DV+ARG+D PD+ LVI   L ++ E  +HR GRTGR G++G+ + ++    
Sbjct: 590 SKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRKGKEGVGILLLAPWE 649

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
           +     +    ++ +   P PSV+   ++  +R L      +     +
Sbjct: 650 ESFLSTI---KDLPISKAPVPSVDPDTKKKVERSLSHVEMKNKEAAYQ 694


>gi|282862091|ref|ZP_06271154.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
 gi|282563116|gb|EFB68655.1| DEAD/DEAH box helicase domain protein [Streptomyces sp. ACTE]
          Length = 545

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+  ++P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL +
Sbjct: 63  TFDALDMPGALLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLA 122

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
                  R +   APLA+ + PTRELA QV   L        + VA  +GG+S+ R+   
Sbjct: 123 R---TAGRRAQPHAPLAMVLVPTRELAQQVTDALTPYATSVNLRVATVVGGMSISRQAGS 179

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       
Sbjct: 180 LRRGAEVLVATPGRLKDLIERGDCRLDEVTVTVLDEADQMADMGFMPQVVALLKQVEPDG 239

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I  L K +  D V  ++       + +++   L    + D   V    
Sbjct: 240 QRMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHV-LHVADETDKKAVATRI 298

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +A
Sbjct: 299 AAREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVA 358

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL 
Sbjct: 359 TNVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLM 418

Query: 361 REANVSVVWEPAPSVEAIRER 381
            +A ++       S +    R
Sbjct: 419 ADAGIAPRTTRIKSSDEELSR 439


>gi|289424994|ref|ZP_06426773.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289427671|ref|ZP_06429383.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|289154693|gb|EFD03379.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
 gi|289159162|gb|EFD07354.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
 gi|332676187|gb|AEE73003.1| DEAD-box ATP-dependent RNA helicase 3 [Propionibacterium acnes 266]
          Length = 700

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 296 REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 352

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 353 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 412

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 413 ATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 470

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 471 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 530

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 531 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 590

Query: 367 VVW 369
            V 
Sbjct: 591 PVE 593


>gi|299822903|ref|ZP_07054789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
 gi|299816432|gb|EFI83670.1| DEAD/DEAH box family ATP-dependent RNA helicase [Listeria grayi DSM
           20601]
          Length = 435

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/407 (26%), Positives = 194/407 (47%), Gaps = 9/407 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I +A+ + G+   T VQ+ ++   +R + ++  +QTG+GKT  F L L + +  E   
Sbjct: 14  PFINKAIHKIGFYEPTEVQQKLIPGIMRGESIIGQSQTGTGKTHTFLLPLINKIDPEKHE 73

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDLQNGAH 126
                    +  AP+RELA Q+  E   +  ++   +   + IGG    R    L+   H
Sbjct: 74  I------QIVITAPSRELATQIYNEARKITEESEQPISTRLLIGGTDKQRMLDKLKTQPH 127

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++GTPGR+ D IR K L +   KA+V+DEAD  LD+GF +D++ I    P   +ML+FS
Sbjct: 128 IIIGTPGRINDMIREKALAVYTAKALVIDEADMALDMGFLNDVDAIAGKMPPNLQMLVFS 187

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           ATI   +    K Y ++    +I  +    + + +  +     D+ + +   L       
Sbjct: 188 ATIPEKLKPFLKKYMENPRYEHIQPKVVSSTAVTHTLLASKSRDKIDLLKEALTIFQPFL 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF +T+ +       L E   +V  + G++S +ER   ++ + +   +  +ATD+AAR
Sbjct: 248 GIVFTNTKQTADEVAAGLTERGLKVAKIHGDVSPRERKRTMKQVENMDYQYIVATDLAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+  +  VI+ EL  + +  +HR+GRTGRAG  G+++ +     + +  +L ++  ++
Sbjct: 308 GIDIQGISHVINFELPDDLDFYIHRTGRTGRAGHSGIALTIYDPADEDKLAQLEKK-GIT 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
                      +   D  R  +     ++    E  M      K  P
Sbjct: 367 FQHMTIKKGAFVEVEDRNRRDKREAKRETADPREIGMRKKAKQKRKP 413


>gi|115397801|ref|XP_001214492.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
 gi|121738078|sp|Q0CLX0|PRP28_ASPTN RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase prp28
 gi|114192683|gb|EAU34383.1| hypothetical protein ATEG_05314 [Aspergillus terreus NIH2624]
          Length = 783

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/415 (26%), Positives = 188/415 (45%), Gaps = 38/415 (9%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             +P  + + +   GY + T +Q A +   ++ +D++  A TGSGKT AF L L   +  
Sbjct: 348 SGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAE 407

Query: 63  --LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +   +     P A+ +APTRELA Q+  E +      G  V   +GG S+  +   
Sbjct: 408 LPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYS 467

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+NGA I++ TPGRL D I  + L +S    V++DEAD M+DLGF + +  ILD+ P   
Sbjct: 468 LRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALPVSN 527

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID-------------------- 220
                 A  + A  +   +           +     +                       
Sbjct: 528 EKPDSDAAENAAAMSQLHHAGGGRDTRYRQTMMYTATMPTAVERIARKYLRRPAIVTIGS 587

Query: 221 ---------YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLF 269
                     R  L+A  D+    +  +          IVF + + +     + + +  F
Sbjct: 588 AGEAVDTVEQRVELIAGEDKRKKRLGDILSSGEFRPPIIVFVNIKRNCDAIAREIKQWGF 647

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
             V L G  +Q++R  AL  +R+G   V +ATD+A RGID+PD+ LV++  ++++ E+  
Sbjct: 648 SSVTLHGSKTQEQREAALASVRNGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYT 707

Query: 330 HRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
           HR GRTGRAG+ G+++  +           +++  ++ +S V +     EA +++
Sbjct: 708 HRIGRTGRAGKSGVAITFLGNEDADVMYDLKQMLIKSPISRVPDELRKHEAAQQK 762


>gi|309807414|ref|ZP_07701377.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 01V1-a]
 gi|308169336|gb|EFO71391.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners LactinV 01V1-a]
          Length = 419

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 181/384 (47%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 10  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 69

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 70  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 124 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   D+ + +  +L  
Sbjct: 184 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKDKQDILYTLLTM 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 304 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 363

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 364 -LGIHFEFKDLKNNELVERTHYHR 386


>gi|213409820|ref|XP_002175680.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
           yFS275]
 gi|212003727|gb|EEB09387.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
           yFS275]
          Length = 434

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 180/372 (48%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L+    +   +
Sbjct: 58  LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          V                  +D  
Sbjct: 118 GEVS------VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGVNIKQDMEAFKDKS 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +R K L ++++K  VLDE D++L+ +  R DI+ +  ++P +++
Sbjct: 172 TSPHIVVATPGRLNALVREKILRVNNVKHFVLDECDKLLEAVDMRRDIQEVFRATPPQKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +     +    V +    ++  + ++L 
Sbjct: 232 VMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLDEKAKNRKLNDLLD 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  + +  +   ++L E  F  + + G L Q ER    +  +D   R+C+A
Sbjct: 292 SLEFNQVVIFVKSVSRANALDRLLRECSFPSICIHGGLPQDERIKRYKAFKDFDKRICVA 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ-RRAERL 359
           TDV  RGID+  + +VI+ ++  +P++ LHR GR GR G KG+++  +  +   +  +++
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFVTTDEDSQVLDKI 411

Query: 360 FREANVSVVWEP 371
                V++   P
Sbjct: 412 QERFEVNITELP 423


>gi|254577701|ref|XP_002494837.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
 gi|238937726|emb|CAR25904.1| ZYRO0A10802p [Zygosaccharomyces rouxii]
          Length = 771

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 173/366 (47%), Gaps = 12/366 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P    +   L +  YV LT +Q   +   L+  DVL +A+TGSGKT+AF + +   
Sbjct: 41  FQDLPLSNAVLRGLKDASYVKLTDIQRDSIPVSLKGNDVLGAAKTGSGKTLAFLIPVLEK 100

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E  R++      AL I+PTRELA+Q+   L  +         + IGG  V  E   +
Sbjct: 101 LYRE--RWTEYDGVGALIISPTRELAMQIYEVLIKIGTHCSFSAGLVIGGKDVKFEAERI 158

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L    +  GLNI +L+ +VLDEAD  LD+GF+  ++ I+ + P  R+
Sbjct: 159 SKINILIGTPGRLLQHLDQSVGLNIDNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPIRQ 218

Query: 182 MLMFSATISPAITT-----LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            L+FSAT S ++       L              S+      +    ++V L+D+ + + 
Sbjct: 219 TLLFSATQSQSLNDLARLSLTDYKTVGTPANVSGSQPETPETLQQHYIVVELADKLDTLF 278

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGR 294
           + ++ H     IVF S+   V    +   +    +  +     Q++R+           +
Sbjct: 279 SFIKTHLKCKMIVFFSSSKQVHFVYETFRKLQPGISLMHLHGRQKQRARTETLDKFSRAQ 338

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQ 353
               IATDV +RGID P ++ V+  +   N +  +HR GR+ R G++G S + + PQ  +
Sbjct: 339 QVCLIATDVVSRGIDFPAVDWVVQVDCPENVDTYIHRVGRSARYGKQGKSLIMLTPQENE 398

Query: 354 RRAERL 359
              +RL
Sbjct: 399 PFLQRL 404


>gi|71275290|ref|ZP_00651577.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71902030|ref|ZP_00684074.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71164099|gb|EAO13814.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Dixon]
 gi|71728209|gb|EAO30396.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/367 (29%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+  G+   T +Q   L   L   D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 16  DLHPALLTGLTRAGFTLCTPIQALTLPVALAGSDIAGQAQTGTGKTLAFLVVVVNRLLSR 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ G
Sbjct: 76  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 136 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 SEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 316 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVV 368
                + 
Sbjct: 376 YIEQKIP 382


>gi|331701287|ref|YP_004398246.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128630|gb|AEB73183.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
           B-30929]
          Length = 453

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/470 (25%), Positives = 206/470 (43%), Gaps = 31/470 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   N+   + +A+ E  + + T VQE ++   ++ +DV+  + TGSGKT AF L +
Sbjct: 1   MSNFSEFNLKPFLLDAVKELNFSHPTPVQEKVMPVIMQGRDVVGQSATGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVH 115
            + L    D         A+   P+RELA Q+    + L   +       A   G     
Sbjct: 61  FNQLDPAKDEV------QAVITTPSRELAYQIIDAAKQLAKHSPEPISTGAYIGGTDKAR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E++       +VVGTPGR+ D I+  GL++     +V+DEAD  LD+GF D ++ I  S
Sbjct: 115 QEKKIQHEQPQLVVGTPGRIWDLIQNGGLDVHTASQLVIDEADMTLDMGFLDVVDNIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K  +M++FSATI   I    K Y  +     I         ID   +     D++  I
Sbjct: 175 FGKHVQMMVFSATIPQKINVFLKKYMVNPFIEEIPVSTIISPTIDNWLISTKGQDKNQLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L        ++F +TR  V   T+ L     +V  + G L  +ER   ++ +++   
Sbjct: 235 YKLLTIGEPYLVLIFANTRKRVEELTEYLKGQGLKVAMIHGGLKPRERKQIMKRVKNLEF 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  +ATD+AARGID+  +  VI+ ++ + + E  +HR GRTGR G  G S+ +   + ++
Sbjct: 295 QFVVATDLAARGIDIEGVSDVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEK 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E      ++ + ++P             + L++   +DS   + +K       K DP 
Sbjct: 355 EVEE---LEDMGIHFKP-------------KALKNGEIVDSYDRNRRKTHRKKHDKLDPT 398

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFK 464
            I    +   +     P     +     R    D   A +    ++   +
Sbjct: 399 MIG---MIKKKKKKIKPGYKRRIKNTIARKDEMDRRVAKREEARAKRKQR 445


>gi|20072320|gb|AAH26492.1| Ddx46 protein [Mus musculus]
          Length = 626

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/536 (22%), Positives = 241/536 (44%), Gaps = 27/536 (5%)

Query: 35  LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
           +  +D++  A+TGSGKT+AF L +   ++ +         P+A+ + PTRELA+Q+ +E 
Sbjct: 1   MSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS-LEEGEGPIAVIMTPTRELALQITKEC 59

Query: 95  EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKA 151
           +      G+ V    GG  +  +  +L+ GA I+V TPGR+ D      G+  N+  +  
Sbjct: 60  KKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTY 119

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211
           VVLDEAD M D+GF   +  I+D+    R+ +MFSAT   A+  LA+      + V +  
Sbjct: 120 VVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGG 179

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQ 270
            +   SD++ + +++    +   ++ +L  Y  + + I+F   +       K L    + 
Sbjct: 180 RSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYP 239

Query: 271 VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLH 330
            ++L G + Q +R + +   ++G  ++ +AT VAARG+D+  L LV++    ++ E+ +H
Sbjct: 240 CMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVH 299

Query: 331 RSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE--RDAQR--- 385
           R+GRTGRAG KG +   I ++  R A  + +   +S    P P +E +    +D Q+   
Sbjct: 300 RAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVP-PDLEKLWSDFKDQQKAEG 358

Query: 386 --ILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGR 443
             I +   F       ++    +   +   +K A G             +    S+ + +
Sbjct: 359 KIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSK 418

Query: 444 DRFRDDSRAFKVGGGSRDNFKGSSW-------FSLSVGSKQKAEARWLMPMLCRSSGINR 496
            R +D +        +                  ++       E++  +     ++ +  
Sbjct: 419 KRVKDMAAPGTSSVPAPTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRG 478

Query: 497 QSIGAIRVQPDLTFVEVSADGVDLLRRTVK---LDKGIQLKYLGGEKPDFRGYKSS 549
            +I    + P ++   ++    + +   +    L+K  + +  GG+   F+ Y+  
Sbjct: 479 GTI----LAPTVSAKTIAEQLAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEE 530


>gi|281345859|gb|EFB21443.1| hypothetical protein PANDA_005663 [Ailuropoda melanoleuca]
          Length = 752

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 72  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 131

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 132 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 189

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 190 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 249

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 250 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 309

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 310 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 369

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +
Sbjct: 370 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEK 429

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 430 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 489

Query: 413 PE 414
            E
Sbjct: 490 KE 491


>gi|229824032|ref|ZP_04450101.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
 gi|229786386|gb|EEP22500.1| hypothetical protein GCWU000282_01336 [Catonella morbi ATCC 51271]
          Length = 447

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/452 (25%), Positives = 209/452 (46%), Gaps = 21/452 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            +   I EAL + G+  LT VQEA++   L+ ++++V +QTGSGK+ +F + +   L   
Sbjct: 10  ELAPFIKEALGQLGFSRLTPVQEAVIPYALKGRNLIVQSQTGSGKSHSFLIPIFQQLDPS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG---VSVHRERRDLQ 122
            D+         +  AP+RELA Q+ +  + L + +   + V           +  +   
Sbjct: 70  LDQV------QVVITAPSRELATQLYQAAKQLASTSPEPLRVVHYMGGTDKQRQVDKLQA 123

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
               +V+GTPGR+ D +    L++   K +V+DEAD  +DLGF   ++ I    P+  ++
Sbjct: 124 GQPQVVIGTPGRIYDLMASHALHVQTAKIMVVDEADMTMDLGFLQVVDDIASRMPEDLQL 183

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSATI   +      Y  +   + I  +    S ID   +     DR   + ++L   
Sbjct: 184 MVFSATIPQQLEVFLNKYVTNPEFIQIEPQEVLASKIDNYLINTKGRDRSALVYDLLTMG 243

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VFC+T+   +  T+ L E   +V ++ G+L+ +ER   ++ ++D   +  +A+D
Sbjct: 244 HPFLALVFCNTKKYAAELTQCLKERGLKVASIHGDLTPRERKRVMRQIKDLEYQYVVASD 303

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARGID+P + +VI+ EL    E  +HR GRTGR    G +   +  +  R    L  +
Sbjct: 304 LAARGIDIPGISMVINTELPKELEFFVHRVGRTGRNQLAGTAYTFMTPDDDRAIVELEAK 363

Query: 363 ----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
                 V +V      V++ R R  +R        D+ Q  E   V  ++ ++  +K+  
Sbjct: 364 GIDFQQVDLVKGEIRPVQS-RHRRLER-------TDTKQDKEDPTVRAMINRNKKKKVKP 415

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRDRFRDDS 450
           G+ R     +    +           R    +
Sbjct: 416 GYKRKLNYQIKEHRQKEARKQKRAERRQARKA 447


>gi|149511215|ref|XP_001519332.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
           [Ornithorhynchus anatinus]
          Length = 790

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 174/389 (44%), Gaps = 15/389 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P  +     L +RG   L  +Q    +     +DV+  A+TG+GKT +F + L   
Sbjct: 184 FSNFPISEQTIRLLKDRGVTYLFPIQVKTFHHVYEGRDVVAQARTGTGKTFSFAIPLTEK 243

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  + +       P  L + PTRELA QV ++ + +       VA   GG   + +   +
Sbjct: 244 LQRKREEQKRGYPPKVLVLTPTRELANQVAKDFKDITRTL--TVACFYGGTPYNGQIDLI 301

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  I+VGTPGR+ DH+    L+++ L  VVLDE D+MLD+GF +D+E I+  +  +  
Sbjct: 302 RKGIDILVGTPGRIKDHLESGRLDLTKLYHVVLDEVDQMLDMGFAEDVEKIISGAYNRES 361

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY----------RAVLVALSDR 231
                  +  A                   +      +                      
Sbjct: 362 EDNPQTLLFSATCPQWVYKVAKKYMKAKYEQVDLIGKLTQKAATTVEHLAIQCRENQRAA 421

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               V  +       AIVFC T+   +              AL G+++Q +R   L+  R
Sbjct: 422 VIGDVIQVYSGNQGRAIVFCETKKDATEMALNSNIKQEAQ-ALHGDIAQSQREITLKGFR 480

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G  +V +AT+VAARG+D+P+++LVI +    + E+ +HRSGRTGRAGR G+ +      
Sbjct: 481 NGVFKVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFFQPR 540

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRE 380
            + +   + +++ ++      PS+  I +
Sbjct: 541 ERCQLRYVEQKSGITFKHVNIPSLVDIIQ 569


>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase domain-containing protein [Sphingomonas
           wittichii RW1]
 gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
          Length = 448

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/368 (29%), Positives = 184/368 (50%), Gaps = 3/368 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+SE GY   T +Q   + P L  KD++  AQTG+GKT +F L +   L    
Sbjct: 8   LSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMIDILAHGR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L + PTRELA QV    E       + +A+ IGGV++  +   L+ G  
Sbjct: 68  SR---ARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLIGGVNMGDQVAALEKGVD 124

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL D      + ++    +V+DEAD MLD+GF  DIE I    P +R+ L+FS
Sbjct: 125 VLIATPGRLMDLFGRGKILLTGCSLLVIDEADRMLDMGFIPDIEEICTKLPAQRQTLLFS 184

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I  LA  +  +  ++ ++     +  ID   V  +   +   +  +L       
Sbjct: 185 ATMPAPIKKLADKFLSNPKQIEVSRPASTNLAIDQSLVETSSRAKRETLRGLLNGGDVST 244

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
           AI+F + + +V    + L  + F+   + G++ Q ER   L   + G   + +A+DVAAR
Sbjct: 245 AIIFSNRKTTVRDLAQSLGRYGFRAGQIHGDMEQPERLRELDRFKGGEINILVASDVAAR 304

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  +  VI+ ++  +P++ +HR GRTGR G  G ++ ++        E + +     
Sbjct: 305 GLDIKGVSHVINFDVPWHPDDYVHRVGRTGRGGATGTAITLVTPEDAEAIEAIEKLTGNK 364

Query: 367 VVWEPAPS 374
           +     P+
Sbjct: 365 IARRGKPA 372


>gi|289616563|emb|CBI56728.1| unnamed protein product [Sordaria macrospora]
          Length = 434

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 177/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   D++  A++G GKT  F L     +    
Sbjct: 57  LKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVA 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++ +
Sbjct: 117 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKE 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 171 THPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I  + + + ++     +  + +       +  +      ++  +  +L 
Sbjct: 231 VMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 291 ELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+++  +  +  +   + +
Sbjct: 351 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKEVLKAI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 411 EKRFEVALPEFPKEGIDA 428


>gi|198419649|ref|XP_002120760.1| PREDICTED: similar to ATP-dependent RNA helicase DDX19B (DEAD box
           protein 19B) (DEAD box RNA helicase DEAD5) [Ciona
           intestinalis]
          Length = 484

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 179/396 (45%), Gaps = 21/396 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLA 57
           K FE  N+ + + + +   G+   + +QE  L   +    ++++  +Q+G+GKT AF L 
Sbjct: 95  KSFEELNLKEELVQGIFAMGFNRPSKIQETALPLLVCNPPQNMIAQSQSGTGKTAAFVLT 154

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + S +  EN        P  + ++PT ELA+Q G+ +E +      +       +  ++ 
Sbjct: 155 MLSRINIEN------KYPQCVCLSPTYELALQTGKAVEQMGKYLKGLQVA--YAIRGNQV 206

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILDS 175
           +R+    A IV+GTPG + D  R +  ++  ++  VLDEAD M+D     D  I      
Sbjct: 207 QRNTNIPAQIVIGTPGTMLDWTRKRVFDLGKVEVFVLDEADVMIDTQGFKDQSIRIQRQL 266

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S K + +L  +      +    +      +     +E    +   Y      +  +  +I
Sbjct: 267 SNKCQLLLFSATYDEQVMRFAEQIVHHPNIIKLRRNEETLENIKQYYVKCSTIEKKYESI 326

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +N+        AI+FC TR + +   K + E    V  LSGEL   +R+  L+  ++ + 
Sbjct: 327 INLYGVLSVGQAIIFCHTRKTAAWLAKRMCEDKHIVALLSGELDVSQRAAVLRRFKEAKE 386

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           RV + T+V +RGID+  + LVI+ +L        + E  LHR GRTGR G+ G+++  + 
Sbjct: 387 RVLVTTNVCSRGIDVEQVTLVINFDLPVDYNRRPDCETYLHRIGRTGRFGKTGVAINFVA 446

Query: 350 QN-MQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
            +   R    +     + +      +   + E+  +
Sbjct: 447 HDQDMRILMEIQDHFGIKITNLDTGNHADMEEKLGE 482


>gi|183981369|ref|YP_001849660.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
 gi|183174695|gb|ACC39805.1| ATP-dependent RNA helicase RhlE [Mycobacterium marinum M]
          Length = 517

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/378 (32%), Positives = 178/378 (47%), Gaps = 14/378 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     I  AL ER      ++QE  L   L   D++  A+TG GKT AFG+ L 
Sbjct: 13  KTFAELGVRDEIVRALGERDIECPFAIQELTLPLALAGDDLIGQARTGMGKTFAFGVPLL 72

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT----------GVVVAVCI 109
             + +         AP AL + PTREL +QV  +L                  + V    
Sbjct: 73  QRVSSGTGVRPLTGAPRALVVVPTRELCLQVTEDLAVAAKYLTATTETGDQRPLSVVSIY 132

Query: 110 GGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI 169
           GG +   +   L+ GA +VVGTPGRL D  +   L +  L  +VLDEADEMLDLGF  DI
Sbjct: 133 GGRAYEPQIEALRAGADVVVGTPGRLLDLSQQGHLQLGGLSVLVLDEADEMLDLGFLPDI 192

Query: 170 EFILDSSPKKRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           E IL   P  R+ ++FSAT+   I T       Q   +R         H   +       
Sbjct: 193 ERILRQIPADRQSMLFSATMPDPIITLARTFMIQPTHIRAEAPHSLAVHDTTEQFVYRAH 252

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             D+   +  +L+       ++F  T+ +  +    L E  F V A+ G+L Q  R  AL
Sbjct: 253 ALDKVELVTRVLQARERGATMIFTRTKRTAQKVADELNERGFAVGAVHGDLGQVAREKAL 312

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  R G   V +ATDVAARGID+ D+  VI+ +   + +  +HR GRTGRAGR G++V +
Sbjct: 313 KSFRSGSVNVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVAVTL 372

Query: 348 IPQNMQRRAERLFREANV 365
           +  +   R   + +   +
Sbjct: 373 VDWDELPRWTMIDKALGL 390


>gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
 gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
          Length = 416

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 188/375 (50%), Gaps = 7/375 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
            ++ +++  +     ++ L + PTRELA QV   ++         +      GGVSV+ +
Sbjct: 69  KIVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTLA+   +D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQQLLRDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREANVSVVWEPA 372
            + ++    +  E  
Sbjct: 367 VIEKKNKFQLEREQV 381


>gi|326779941|ref|ZP_08239206.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660274|gb|EGE45120.1| DEAD/DEAH box helicase domain protein [Streptomyces cf. griseus
           XylebKG-1]
          Length = 537

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/364 (32%), Positives = 185/364 (50%), Gaps = 6/364 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 78  FADLDMPAGLLKTLAAQGVTEPFPIQGATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 137

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R     APLA+ + PTRELA QV   L        + +A  +GG+S+ ++   L
Sbjct: 138 ---TAGRRGEPRAPLAMVLVPTRELAQQVTDALTPYATAVNLRLATVVGGMSITKQSATL 194

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  +   VLDEAD+M D+GF   +  +L       +
Sbjct: 195 RRGAEVLVATPGRLKDLIERGDCRLDEVSITVLDEADQMADMGFMPQVVALLKQVEADGQ 254

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   I  L K +  D V  ++       + +++   L  L + D   V     
Sbjct: 255 RMLFSATLDKNIDRLVKMFLTDPVVHSVDPSAGAVTTMEHHV-LHVLDETDKKAVATKIA 313

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +  RF K L     +  AL G  SQ +R+  L   ++G+    +AT
Sbjct: 314 AREGRVIMFVDTKRAADRFAKRLLASGVRAAALHGGRSQPQRNRTLDQFKNGQVTALVAT 373

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   RL +
Sbjct: 374 NVAARGIHVDDLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVLPEEKREMTRLMQ 433

Query: 362 EANV 365
           +A +
Sbjct: 434 DAGI 437


>gi|302695853|ref|XP_003037605.1| hypothetical protein SCHCODRAFT_13834 [Schizophyllum commune H4-8]
 gi|300111302|gb|EFJ02703.1| hypothetical protein SCHCODRAFT_13834 [Schizophyllum commune H4-8]
          Length = 524

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 175/363 (48%), Gaps = 4/363 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK   ++P ++   LS+ G+ + T +Q   +   L ++D+   + TG+GKT+++ L + +
Sbjct: 119 MKERYDMPSLLLSNLSKHGFKHPTGIQSHGIPILLEKRDLAAISPTGTGKTLSYLLPIIA 178

Query: 61  TLL-AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
            L        S      A+ +APTRELA Q+  E   L       + +     +     +
Sbjct: 179 ALESPATSNESAGKGVRAVIVAPTRELAHQIHNECLKLAEGRKWRIILFSKATASTLSDK 238

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-DSSPK 178
            +++   I++ TP RL   ++   L + +++ ++LDEAD MLD  F   +E I+   +  
Sbjct: 239 AVRDKVDIIISTPLRLVASLQTGDLELQNVRHLILDEADRMLDPEFLSQVEEIIASCTHP 298

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVN 237
             +  +FSAT+      +A +  ++ +R+ +  ++     I      +     +  +++ 
Sbjct: 299 DVQKAVFSATLPAGAEKIAMDMLRNPIRIVVGLKDTPLPLISQSLTYVADDGSKLPSLLQ 358

Query: 238 ILRYHGAKNAIVFCSTR-ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                     ++F ST+  + S   +++   +  V  L   ++++ER +A+  MR G + 
Sbjct: 359 YFAEPYNPPVLIFTSTQPRASSLAEELILNGIPNVDCLHAGMTKKERDDAVSRMRKGESW 418

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V ++T+V ARG+D   +  VI+ +  ++ ++ +HR GRTGRA R+G +V           
Sbjct: 419 VMVSTEVMARGMDFKGVREVINYDFPTSVQSYIHRIGRTGRAEREGKAVTYFTDEDAPYL 478

Query: 357 ERL 359
           + +
Sbjct: 479 KAI 481


>gi|237805399|ref|ZP_04592103.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331026506|gb|EGI06561.1| ATP-dependent RNA helicase RhlB [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 355

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 179/345 (51%), Gaps = 3/345 (0%)

Query: 32  NPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91
            P L  +D++ +AQTG+GKT  F L L   L  E  + +P ++  AL +APTRELA QV 
Sbjct: 1   PPVLAGRDLMAAAQTGTGKTAGFALPLLQRLTMEGPKVAP-NSIRALVLAPTRELADQVH 59

Query: 92  RELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKA 151
             +        +      GGVS++ +   L+ G  ++V TPGRL D  R K +  S L+ 
Sbjct: 60  ESIRQYAEHLPLSTYAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLHRQKAVKFSQLQT 119

Query: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM--FSATISPAITTLAKNYQKDAVRVNI 209
           ++LDEAD MLD+GF   +  I+  +P K       FSAT +  +  LAK +  +   V I
Sbjct: 120 LILDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTEPSIVEI 179

Query: 210 ASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF 269
            S N    +++     VA +D+   + N++  +G +  +VF + +  V R  + L     
Sbjct: 180 ESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGV 239

Query: 270 QVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLL 329
               LSG++ Q +R   L+  R+G+ RV +ATDVA RGI +  +  VI+  L   P++ +
Sbjct: 240 NAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYV 299

Query: 330 HRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           HR GRTGRAG  G+S+    ++   +   +  +    +  E  P+
Sbjct: 300 HRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPT 344


>gi|46125837|ref|XP_387472.1| hypothetical protein FG07296.1 [Gibberella zeae PH-1]
 gi|91206552|sp|Q4I662|DBP8_GIBZE RecName: Full=ATP-dependent RNA helicase DBP8
          Length = 547

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 181/424 (42%), Gaps = 27/424 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F   ++   + ++L        T +Q+  +   L+ +D +  ++TGSGKT+AF + + 
Sbjct: 116 TTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPIL 175

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                +       +A  A+ + PTRELA+Q+  + + + +   +   +  GG  +  +  
Sbjct: 176 QKWSEDP------TAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAI 229

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--------GFRDDIEF 171
           ++    H+++ TPGRL DHIR  G +       V     +  D             D+E 
Sbjct: 230 EIGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLNATGPGSMLPDVEE 289

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-------DYRAV 224
            L   P          T +      A                   +             +
Sbjct: 290 CLSVLPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLKQMYI 349

Query: 225 LVALSDRDNAIVNI--LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            V ++ +++ +        +  K  I+FC+  ++      +L     +V +L  +L Q++
Sbjct: 350 KVPVTHKEHYLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQ 409

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R + L   R   AR+ +ATDVAARG+D+P++ LVI+ +L  +P++ +HR GRT RAGRKG
Sbjct: 410 RIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKG 469

Query: 343 MSVFVIPQNMQRRAERLFREAN--VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +V  + Q     A  + +     +    E   ++E    RDA +++ +      ++ +E
Sbjct: 470 EAVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETRVVRDALKLVSEKKREALLEVEE 529

Query: 401 KKMV 404
            + V
Sbjct: 530 GREV 533


>gi|324510721|gb|ADY44481.1| ATP-dependent RNA helicase abstrakt [Ascaris suum]
          Length = 462

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/374 (28%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 3   IFE----NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +FE      P+V+   L    +   T +Q          +D++  A+TGSGKT+AF L  
Sbjct: 58  VFEFNESGFPEVLVNMLYSS-FERPTIIQSISWPIASSGRDIVSIAKTGSGKTLAFILPG 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +  R      P  L + PTRELA QV           G+ V    GG +   + 
Sbjct: 117 IIHTTKQPPR-GRGEGPSVLVLLPTRELAQQVQEVSREYCKAMGLSVTCLFGGAARGSQA 175

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  + + TPGRL D +     N+     +VLDEAD MLD+GF ++I  I      
Sbjct: 176 RDLERGVDVAIATPGRLLDFLESGTTNLRRCSYLVLDEADRMLDMGFEEEIRTIFSFFKG 235

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +R+ L+FSAT+   I   A++    A+ VN+        ++      V   ++   I++ 
Sbjct: 236 QRQTLLFSATMPRKIQNFARSALVRAIIVNVGRAGAASLNVLQEIEYVRADEKLTRILDC 295

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+       ++F   ++ V    + L      V +L G   Q++R   +   R G   V 
Sbjct: 296 LQKT-PPRVLIFAEKKSDVDNIYEYLLVKGVDVASLHGGKDQKDRHTGVDAFRRGEKDVL 354

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ----NMQR 354
           +ATDVA++G+D  +++ VI+ ++  + EN +HR GRTGR+G+KGM+   + +    ++ +
Sbjct: 355 VATDVASKGLDFENIQHVINFDMPEDIENYVHRIGRTGRSGKKGMATTFVNRRADMSVLQ 414

Query: 355 RAERLFREANVSVV 368
               L  EA   + 
Sbjct: 415 DLRALLLEAGQQLP 428


>gi|309809690|ref|ZP_07703546.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315653056|ref|ZP_07905984.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
 gi|308170050|gb|EFO72087.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315489591|gb|EFU79225.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
           iners ATCC 55195]
          Length = 421

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 181/384 (47%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 12  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 71

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 72  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 125

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 126 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 186 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 246 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 306 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 366 -LGIHFEFKDLKNNELVERTHYHR 388


>gi|297160335|gb|ADI10047.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 478

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 190/361 (52%), Gaps = 5/361 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P+ +   L+ +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 58  DLPEGLTAELARQGVTVPFPIQAAALPNALAGRDVLGRGRTGSGKTLAFGLALLAR--TA 115

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L++GA
Sbjct: 116 GQRAEPRR-PLALVLVPTRELAQQVTDALIPYARPLRLRLATVVGGMSIGRQAGALRDGA 174

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L   P   + ++F
Sbjct: 175 EVVVATPGRLHDLIERGDCRLDQVRVTVLDEADQMADMGFLPQVTRLLRQVPADGQRMLF 234

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+  A+  L + +  D    ++ +     + +++  + +A +D+    V         
Sbjct: 235 SATLDHAVGQLVRRFLDDPAVHSVDASAGAVTTMEHHVLHIADTDKRT--VVTRVAARDG 292

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             I+F  T+ +V R TK L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 293 RVIMFLDTKRAVDRLTKHLLASGVRAAALHGGKSQPQRTRTLDYFKTGHVSVLVATNVAA 352

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + DL+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R    L  +A +
Sbjct: 353 RGIHVDDLDLVVNVDPPADHKDYLHRGGRTARAGGSGTVVTLVLPDQRRAMAGLMTDAGI 412

Query: 366 S 366
           +
Sbjct: 413 T 413


>gi|260947074|ref|XP_002617834.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
 gi|238847706|gb|EEQ37170.1| hypothetical protein CLUG_01293 [Clavispora lusitaniae ATCC 42720]
          Length = 896

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/394 (28%), Positives = 184/394 (46%), Gaps = 22/394 (5%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
               I   + E+  Y   T +Q   L   +  +D+L  A+TGSGKT+AF L +    + E
Sbjct: 304 FSSTIMSLIEEKLEYKKPTPIQCQALPIIMSGRDILSIAKTGSGKTMAFVLPML-RHVQE 362

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S    P+AL ++PTRELA+Q+ ++L     K G+    C GG S+  +  +L+ G 
Sbjct: 363 QPPLSKGDGPIALLLSPTRELALQIFKQLSIFTKKLGISACCCYGGSSIELQIAELKKGC 422

Query: 126 HIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            +VV TPGRL D      G+  N+  +  VVLDEAD M D GF   +  I       R+ 
Sbjct: 423 QVVVSTPGRLIDLLAANGGRVCNLRRVTYVVLDEADRMFDFGFEPQVNKIFSQVRPDRQS 482

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV----------ALSDRD 232
           ++FSAT +  +  LAK    D ++V +   +    +I  R  L               + 
Sbjct: 483 ILFSATFARKMEMLAKAILHDPIQVIVGGISVVSQEITQRVELFEVTENDNEDTIEKRKF 542

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMM 290
             ++ +L+   +   ++F   + S  +    L       + + G   Q +R  A      
Sbjct: 543 EKLLKVLKEFPSTKKLIFVEKQDSADKLMVKLLTENIPSLTIHGGKEQIDRKYAIKNFSD 602

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            D    V IAT +AARG+D+  L LV++ + +++ E+ +HR GRTGRAG  G++   +  
Sbjct: 603 NDSGVDVLIATSIAARGLDVKGLGLVVNYDPANHMEDYVHRVGRTGRAGNTGVAYTFVTS 662

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +R    L +   +S + E     +AI +R  +
Sbjct: 663 KQERPITDLVKAMRLSKMPE-----DAIDQRLVE 691


>gi|226528292|ref|NP_001149406.1| spliceosome RNA helicase BAT1 [Zea mays]
 gi|195627032|gb|ACG35346.1| spliceosome RNA helicase BAT1 [Zea mays]
          Length = 399

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 173/347 (49%), Gaps = 10/347 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        V      G    R+ +D      
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   ++Q+ER    +  ++G  ++ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKKILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  + 
Sbjct: 348 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 394


>gi|226289750|gb|EEH45234.1| ATP-dependent RNA helicase DBP2 [Paracoccidioides brasiliensis
           Pb18]
          Length = 482

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/339 (29%), Positives = 168/339 (49%), Gaps = 7/339 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F+    PQ +   +  +G+   T++Q       L  +DV+  A+TGSGKT+ + L  
Sbjct: 128 VETFDEAGFPQYVMTEVKAQGFSRPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 187

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+    +P   P+ L +APTRELAVQ+  E+      + +      GGV    + 
Sbjct: 188 IVHINAQ-PLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 246

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL  G  + + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+     
Sbjct: 247 RDLTRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 306

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVALSDRDNA 234
            R+  M+SAT    +  LA+++  D ++VNI S     N + + I          +R   
Sbjct: 307 DRQTCMWSATWPKDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEFEKRERMAK 366

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +  +        ++F  T+      T+ L +  +  +++ G+  Q ER   L   + G+
Sbjct: 367 HLERIMDDKNAKILIFTGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGK 426

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + + +ATDVA+RGID+ D+  V++ +  +N E+ +HR G
Sbjct: 427 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIG 465


>gi|221061545|ref|XP_002262342.1| ATP-dependent RNA helicase [Plasmodium knowlesi strain H]
 gi|193811492|emb|CAQ42220.1| ATP-dependent RNA helicase, putative [Plasmodium knowlesi strain H]
          Length = 713

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/428 (25%), Positives = 188/428 (43%), Gaps = 64/428 (14%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-LASTLLA 64
           N  + I   L+ + +   T++Q+      L  KD++  A+TGSGKT+AF L  L   L  
Sbjct: 279 NFHEAIVNHLNAK-FKEPTAIQKVTWPIALSGKDLIGVAETGSGKTLAFALPGLMHILKQ 337

Query: 65  ENDRFSPASA-------------------------------------------------- 74
              +    +                                                   
Sbjct: 338 RERQVEKENGWEQGQEGIGEKTTQEWTNESMQGATQDAVQGDTEGATQRSGDRYVHQGDR 397

Query: 75  -PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
               L + PTREL +QV  E++    +  +      GGV  + +  +L+ GA IVV TPG
Sbjct: 398 TVYGLILLPTRELCMQVVDEIKIFEKELDIRSVAVYGGVPKYTQINNLKKGADIVVATPG 457

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +    +++     VV+DEAD +LD+GF   ++ I+    K +++L F+AT    +
Sbjct: 458 RLLDLLENGVIHLLRCIYVVIDEADRLLDMGFEKQLKKIMTQVNKNKQLLFFTATWPEQV 517

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNILRYHGAKNAIVF 250
             LA ++           ++   ++ +    ++  S    +   +  + + +     ++F
Sbjct: 518 RQLAYDFSSLDPVKIQVGKSELTANKNIEQSVIVSSSIDLKKKLLDWLKQNYEGNKILIF 577

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C T+ +     K L  H +  +A+ G+  Q+ER   L   R  R  + +ATDVA+RG+D+
Sbjct: 578 CDTKRNCDNLCKELRYHQYNALAIHGDKEQRERDRILNNYRSDRCNILVATDVASRGLDI 637

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN--------MQRRAERLFRE 362
            ++ +V++ +L +  E+ +HR GRTGRAG+KG +V   P +          R   +L  +
Sbjct: 638 KNISIVVNYDLPNTIEDYIHRIGRTGRAGKKGKAVLFFPYDYYVPQKSRFARDLVKLLNK 697

Query: 363 ANVSVVWE 370
           AN +V  E
Sbjct: 698 ANHAVPAE 705


>gi|120403427|ref|YP_953256.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
           vanbaalenii PYR-1]
 gi|119956245|gb|ABM13250.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii
           PYR-1]
          Length = 443

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 6/367 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + ++LS+RG      +Q A L   L  +DVL   +TGSGKT+AF + L +
Sbjct: 5   TFTDLGVPAPLVQSLSQRGITEPFPIQAATLPDALAGRDVLGRGKTGSGKTLAFSIPLVT 64

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L     R S  S P  L +APTRELA Q+   L+ L A  G+ +    GGVS  R+   
Sbjct: 65  AL---TGRRSQPSRPSGLVLAPTRELATQITATLQPLAAANGLRITTIFGGVSQSRQVAA 121

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  IVV  PGRL D +  K +++  +   VLDEAD M DLGF   +  IL ++P+  
Sbjct: 122 LRAGVDIVVACPGRLEDLMGQKLISLQDVTTTVLDEADHMADLGFLPGVTRILAATPRGG 181

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L + +  D V  ++       + + +         ++   +    
Sbjct: 182 QRLLFSATLDNGVDKLVQRFLNDPVLHSVNEAAEAPAQMTHHV-FHVGGVQEKKDLVHRL 240

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G    I+F  T+    +  K L +     V L G LSQ  R   L     G ARV +A
Sbjct: 241 ASGTGRRILFMRTKHQARKLAKQLTDAGVPSVDLHGNLSQPARERNLAAFSSGEARVLVA 300

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+ + D+ELV+H +     +  LHRSGRT RAG  G  V V+    +R  ++L 
Sbjct: 301 TDIAARGVHVDDVELVVHVDPPMEHKAYLHRSGRTARAGSDGDVVTVVLPEQRRDTQQLL 360

Query: 361 REANVSV 367
           R A ++V
Sbjct: 361 RRAGITV 367


>gi|317507502|ref|ZP_07965226.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316254189|gb|EFV13535.1| DEAD/DEAH box helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 403

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 114/373 (30%), Positives = 174/373 (46%), Gaps = 12/373 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  +L+E G  N  ++QE  L   L   D++  A+TG GKT+AFG+ L   +    
Sbjct: 1   MHPEIVASLAEAGKHNAFAIQEQALPLALGGHDLIGQARTGMGKTLAFGVPLLQRVAEAQ 60

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT------GVVVAVCIGGVSVHRERRD 120
                  +P AL + PTREL +QV  +L     +          +    GG     +   
Sbjct: 61  A----EDSPRALVVVPTRELCLQVTNDLAEASKQLKLADGRPTRIVSLYGGRPYEGQIAT 116

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ G  +VVGTPGRL D      L ++ ++ +VLDEADEMLDLGF  D+E I+   P  +
Sbjct: 117 LQKGVDVVVGTPGRLLDLWSRGDLKLNAIRMLVLDEADEMLDLGFLPDVEKIMAKLPTGK 176

Query: 181 RMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + ++FSATI   + T       Q   +R         H             ++D  +   
Sbjct: 177 QTMLFSATIPGPVLTLARTFMTQPTHIRAEGGDLAPVHERTTQHVYRAHALNKDELVSRF 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L+  G    ++F  T+ S  +  + L    F   +L G++SQ  R  AL   R G+  + 
Sbjct: 237 LQAEGRGTTMIFTRTKRSAGKLAEELTLRGFNAGSLHGDMSQGAREEALSGFRKGKIEIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TDVAARGID+  +  VI+     + +  +HR GRTGRAGR G ++ ++      R E 
Sbjct: 297 VCTDVAARGIDIDGITHVINYTCPEDEKVYVHRIGRTGRAGRTGNAITLVDWEDLPRWEY 356

Query: 359 LFREANVSVVWEP 371
           +     ++    P
Sbjct: 357 INTALGLAFADPP 369


>gi|74654532|sp|Q9Y7C4|ROK1_CANAL RecName: Full=ATP-dependent RNA helicase CHR1
 gi|4589366|gb|AAD26468.1| DEAD box RNA helicase [Candida albicans]
          Length = 578

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 170/366 (46%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +   L +  ++  T +Q   +   L  +D++  A TGSGKT+AF + L   +L++
Sbjct: 137 HINKKVLSNLIDNEFIEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK 196

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   S       L I+PT ELAVQ+ +ELE +      +    +      +   ++   +
Sbjct: 197 N--VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSS 254

Query: 126 --HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
              I+V TP RL D ++   +++S ++ +++DEAD++ D GF +   E +   +  K R 
Sbjct: 255 KYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNLKIRK 314

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI  ++  +A +  KD +R+ I  +    + ID + V           +  +   
Sbjct: 315 SIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQQ 374

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +          L      V  +  E + ++R   ++  ++G   V I 
Sbjct: 375 GEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLIT 434

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D   + LVI+ ++  + +  +HR GRTGR G+ G +V    +   +  + + 
Sbjct: 435 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPIL 494

Query: 361 REANVS 366
                S
Sbjct: 495 NVMKQS 500


>gi|269104380|ref|ZP_06157076.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161020|gb|EEZ39517.1| ATP-dependent RNA helicase DbpA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 437

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 118/359 (32%), Positives = 193/359 (53%), Gaps = 7/359 (1%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   L   L  +D++   +TGSGKT AFGL L + L  +  R         L + P
Sbjct: 1   MTPIQAQSLPIILAGQDIIAQGKTGSGKTAAFGLGLLNNLNVKRFRV------QTLVLCP 54

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L      + V    GG+    +   L++GAHI+VGTPGR+ +H+R 
Sbjct: 55  TRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVEEHLRK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L++ +L  +VLDEAD ML++GF+D I+ ++D +PK+R+ L+FSAT    I ++A +  
Sbjct: 115 GNLSLDNLNTLVLDEADRMLEMGFQDAIDAVIDCAPKQRQTLLFSATYPTQIASIANSIM 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
                V + + +   S   +   +    +R +A+  +L  H  ++A++FC+T+       
Sbjct: 175 NKPAMVKVEATHDNSSISQHFYKVDNNEERMDAVRLLLAKHHPESAVIFCNTKREAQEVA 234

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L +  F  +AL G+L Q+ER   L  + +    + +ATDVAARG+D+  L+ VI+  L
Sbjct: 235 DTLVDEGFSALALHGDLEQRERDRTLVRLANKSCSILVATDVAARGLDIDALDAVINYHL 294

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           + + E  +HR GRTGRAG KG++  +       +   L    +  +  E  P    + +
Sbjct: 295 ARDTEVHVHRIGRTGRAGSKGIACSLFSDKEHYKVALLEDYLDRPISGEALPDQSVLNQ 353



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 1/73 (1%)

Query: 458 GSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSG-INRQSIGAIRVQPDLTFVEVSAD 516
                        +  G KQK     ++  L      I    +G I +     +V V  D
Sbjct: 352 NQPPYRPAMVTLLIDGGKKQKVRPGDILGALTGGDKSIQGSQVGKIHIFDYCAYVSVQRD 411

Query: 517 GVDLLRRTVKLDK 529
                 + ++  K
Sbjct: 412 IAKAALKKLENGK 424


>gi|309806027|ref|ZP_07700053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167630|gb|EFO69783.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 202/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 10  DQLKPNIKKGLEKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 69

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 70  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 124 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMTRLGSNVT 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   D+ + +  +L  
Sbjct: 184 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKDKKDILYTLLTM 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 304 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 363

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 364 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 422

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 423 AIQADRQQKKKI--EERIKVRKQKRQRKRERDRLRED 457


>gi|260889520|ref|ZP_05900783.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Leptotrichia
           hofstadii F0254]
 gi|260860931|gb|EEX75431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Leptotrichia
           hofstadii F0254]
          Length = 276

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 111/264 (42%), Gaps = 32/264 (12%)

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+ +L  VI+  +    E+ +HR GRTGRAG+KG+++  +      
Sbjct: 1   MTILVATDVAARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGVAITFVTPREAS 60

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ--DPLFLDSIQGDEKKMVDVLLAKHD 412
           +  ++ R     +  E  P+VE I E   + ++   D +  ++     K++ + L+   D
Sbjct: 61  KLAQIKRITKTDIKREDIPNVEEILEAKREALVAYVDEIIKENDFDAYKELAEKLMDGRD 120

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            +++ A  LR        P+  + +  V                          +   ++
Sbjct: 121 AKQVLASVLRHVYEDEFLPDNYSEIQDVK-------------------VKIDDKTRLFIA 161

Query: 473 VGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQ 532
           +GSK       L+ +L + +    + +  +++    +F+ V       + R +   K   
Sbjct: 162 LGSKDGYNVGRLLDLLNKKAKTPGRKVKDVKIMDKYSFITVPLQEAQYIMRALNSKK--- 218

Query: 533 LKYLGGEKP---DFRGYKSSGFKS 553
                  KP   +  G ++SG KS
Sbjct: 219 -----DSKPLVEEATGNRNSGEKS 237


>gi|227888706|ref|ZP_04006511.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
 gi|227850733|gb|EEJ60819.1| ATP-dependent RNA helicase [Lactobacillus johnsonii ATCC 33200]
          Length = 461

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 192/389 (49%), Gaps = 12/389 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF+N  I   +   L +  +   T VQ +++   L +K+V+V A TGSGKT A+ + + 
Sbjct: 6   SIFQNEKIRPELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +              A+  AP+RELA Q+ +    L   +G+ +++     G     +
Sbjct: 66  NMIDENAP------VTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQ 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +       +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+   
Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKL 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            KK  +  FSATI   +    + Y      + I +       I    + V   D+ + + 
Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILY 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +
Sbjct: 240 KLLTMGQPYLALVFANTKKTVDELTDYLVEQGLKVAKIHGGITERERKRIIRQVREGQYQ 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I  +   + 
Sbjct: 300 YVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQI 359

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           E L +   +   ++   + E +      R
Sbjct: 360 EDLEK-LGIHFDFKDLRNGELVERTHYHR 387


>gi|148707600|gb|EDL39547.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ + + L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
                  FS    P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ------AFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   +++S +K VV+DEAD ML +GF+  +  +L+ +P   
Sbjct: 319 LRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  L      + VR+    +N   + +          A   +   I+N
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V         ++  E SQ ER + L+ + +G   V
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   +  + +++K
Sbjct: 559 DVAKRVKPTGSILPP------------QLLNSPYLHEQKRKEQQK 591


>gi|157121423|ref|XP_001659898.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108874627|gb|EAT38852.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 784

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 161/355 (45%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I +A+ + GY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L    
Sbjct: 45  LSMPILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEKLKQRE 104

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    S   AL + PTRELA+Q  + ++ L   T +   + +GG S+  +   +     
Sbjct: 105 IK----SGARALVLTPTRELAIQTFKFIKQLGKFTDLKTILVLGGDSMDSQFAAIHTLPD 160

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         L +S ++  V DEAD + ++GF + +   L   P+ R+M++FS
Sbjct: 161 IIVATPGRFLHLCVEMDLKLSSVQYCVFDEADRLFEMGFGEQLTETLRRLPEARQMVLFS 220

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
           AT+   +   AK    D   + +  E++    +D + V     +R   ++ +LR    + 
Sbjct: 221 ATLPKLMVDFAKAGLSDPTLIRLDVESKIPEALDLKFVYCRPDERYATLLILLREVIPRS 280

Query: 246 -NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              ++F  T+  V   + +L         +   L    R          +  V + TD+A
Sbjct: 281 AQTVLFAGTQHHVELISLILTRAGIPNTYVFSSLDASARKINTAKFTMKKVNVLVVTDIA 340

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+P L+ V++      P+  +HR GR  RAGR G +  +   +       L
Sbjct: 341 ARGLDIPSLDYVVNVHFPGKPKLFVHRVGRCARAGRSGTAYNIFSNDDIAHMIDL 395


>gi|74227490|dbj|BAE21808.1| unnamed protein product [Mus musculus]
          Length = 619

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ + + L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
                  FS    P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ------AFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   +++S +K VV+DEAD ML +GF+  +  +L+ +P   
Sbjct: 319 LRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  L      + VR+    +N   + +          A   +   I+N
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V         ++  E SQ ER + L+ + +G   V
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   +  + +++K
Sbjct: 559 DVAKRVKPTGSILPP------------QLLNSPYLHEQKRKEQQK 591


>gi|13385988|ref|NP_080776.1| probable ATP-dependent RNA helicase DDX59 [Mus musculus]
 gi|81917187|sp|Q9DBN9|DDX59_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX59; AltName:
           Full=DEAD box protein 59
 gi|12836314|dbj|BAB23601.1| unnamed protein product [Mus musculus]
 gi|23272229|gb|AAH23840.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Mus musculus]
          Length = 619

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ + + L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
                  FS    P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ------AFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   +++S +K VV+DEAD ML +GF+  +  +L+ +P   
Sbjct: 319 LRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  L      + VR+    +N   + +          A   +   I+N
Sbjct: 379 QTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V         ++  E SQ ER + L+ + +G   V
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL +++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   +  + +++K
Sbjct: 559 DVAKRVKPTGSILPP------------QLLNSPYLHEQKRKEQQK 591


>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238661058|emb|CAZ32043.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 625

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 210/470 (44%), Gaps = 32/470 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + + ++L+E      T +Q A +   L  +D+   A+TGSGKT+AF L +   L  +
Sbjct: 131 SLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGSGKTLAFLLPVLERLAKK 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRDLQNG 124
           +  F+ A    AL I+PTRELAVQ+    E L        + +  GG+ +H +   L+  
Sbjct: 191 STDFNHA-VTRALVISPTRELAVQIFNVAEKLVKYCPKLRIQLAAGGLDLHSQEASLRLN 249

Query: 125 AHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
             +VV TPGRL DH+      N+ H++ +VLDEAD++LD  F + I  I+     KR+ L
Sbjct: 250 PDLVVATPGRLIDHLSNAPSFNLQHIEYLVLDEADKLLDEYFAEQIGEIIKFCSTKRQTL 309

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA---VLVALSDRDNAIVNILR 240
           +FSAT++ ++  LA    +D V+V +         +             DR   ++ +L 
Sbjct: 310 LFSATMTESVKELAILSLRDPVQVFLNQATAVAQCLHQEFVRIRPHREDDRRAIVIALLM 369

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-------------- 286
            H  K  IVF  T+    +   +L         L G ++Q +R  A              
Sbjct: 370 RHFRKRTIVFLPTKKDCHKMHIMLGLLGLSCTELHGNMTQAQRLEALKRFSYVGTSDECK 429

Query: 287 ----------LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
                     +         + +ATD+A+RG+D+P+++ VI+  L    +  +HR GRT 
Sbjct: 430 NKSATDQLTEMNNPDIRPVDILLATDLASRGLDIPNVQTVINYTLPQTMKQYVHRVGRTA 489

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS-VEAIRERDAQRILQDPLFLDS 395
           R    G +V ++ ++ ++  + + ++A   V      S V A  +    R+      + +
Sbjct: 490 RIMNVGRAVSLVGEDDRKVMKEIMKQAPYPVKARVIASDVIATYQSKITRLEPIIGKILA 549

Query: 396 IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
            + +E+++          E++ +  ++     L   E          RD+
Sbjct: 550 AEAEERELRAAQSQLSKAEELVS-CMKSGTTPLSCVERRVDWFAERKRDK 598


>gi|116629091|ref|YP_814263.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|238853834|ref|ZP_04644199.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
 gi|116094673|gb|ABJ59825.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
           33323]
 gi|238833529|gb|EEQ25801.1| dead/deah box helicase domain protein [Lactobacillus gasseri 202-4]
          Length = 464

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 185/384 (48%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           E I   +   L +  +   T VQ A++   L  K V+V A TGSGKT A+ L L + +  
Sbjct: 14  EKIRPELRAGLEKINFSKPTKVQAAVIPALLSNKSVVVQAATGSGKTHAYLLPLLNMIDE 73

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDL 121
                       A+  AP+RELA Q+ +    L   +G+ +++     G     +  +  
Sbjct: 74  NAP------VTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQIEKAE 127

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+    KK  
Sbjct: 128 NRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLSQMDEIISKLDKKVV 187

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +    + Y      + I +       I    + V   D+   +  +L  
Sbjct: 188 LGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEILYKLLTM 247

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +  +A+
Sbjct: 248 GQPYLALVFANTKKTVDELTNYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQYVVAS 307

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I      + E L +
Sbjct: 308 DLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDEEMPQIEDLEK 367

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 368 -LGIHFDFKEIKNGELVERTHYHR 390


>gi|90110536|gb|ABD90550.1| DEAD box protein 80 [Drosophila virilis]
 gi|90110538|gb|ABD90551.1| DEAD box protein 80 [Drosophila virilis]
          Length = 465

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 147/392 (37%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  ++   + + +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 77  VKTFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +            P  L ++PT ELA+Q G     +      +            
Sbjct: 137 AMLSRVNVA------LDHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEVD 190

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               +     I                 +    +  +   +            I      
Sbjct: 191 RNSKITEHILIGTPGKMLDWGLKMRLFDMKKVRVFVLDEADVMIATQGHHDQCIRIHKML 250

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + + +   +      +        +  +   +  E    +   Y         + NAI
Sbjct: 251 SSQCQMLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGKYNAI 310

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC TR + +     +      V  LSG+L+ ++R   L   R G+ 
Sbjct: 311 QNIYGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQE 370

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V +RGID+  + +V++ +L       ++ E  LHR GRTGR G+ G+++ +I 
Sbjct: 371 KVLITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLID 430

Query: 350 QNMQRRAER-LFREANVSVVWEPAPSVEAIRE 380
                   R + +     + +    + + I +
Sbjct: 431 GEKSMAVCRTIEKHFQKDITYLNTDNADDIEK 462


>gi|68487950|ref|XP_712192.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|68488947|ref|XP_711718.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|74656119|sp|Q59PR3|DBP8_CANAL RecName: Full=ATP-dependent RNA helicase DBP8
 gi|46433039|gb|EAK92496.1| hypothetical protein CaO19.6652 [Candida albicans SC5314]
 gi|46433563|gb|EAK92999.1| hypothetical protein CaO19.13973 [Candida albicans SC5314]
 gi|238880002|gb|EEQ43640.1| hypothetical protein CAWG_01884 [Candida albicans WO-1]
          Length = 440

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/432 (26%), Positives = 192/432 (44%), Gaps = 24/432 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + + E+L        T++Q A +   L+  D +  A+TGSGKT+AF   + +
Sbjct: 2   SFNDLGVAKWLSESLDAMKIYTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +            L + PTRELA+Q+  +   L A   + VAV +GG    ++   
Sbjct: 62  QWSEDP------FGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           LQ   H V+ TPGRL DHI   G         +K +VLDEAD +L   F  D++   D  
Sbjct: 116 LQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVL 175

Query: 177 PKKRRMLM----------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           P   +               A      T          V             I Y  V  
Sbjct: 176 PTSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPS 235

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            + +     +  L       A++F +   +     ++L +  F+V +L  E+ Q ER+N+
Sbjct: 236 YVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNS 295

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   + G AR+ IATDVA+RG+D+P +ELVI+ ++ ++P++ +HR GRT RAGRKG +V 
Sbjct: 296 LHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVS 355

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMV 404
           +I +    R + +    N  +      + + + +    A  + +    ++  + +  +  
Sbjct: 356 IIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERK 415

Query: 405 DVLLAKHDPEKI 416
            +   KH  +K+
Sbjct: 416 KINRKKHGLDKV 427


>gi|198437354|ref|XP_002125842.1| PREDICTED: similar to CG9143 CG9143-PA [Ciona intestinalis]
          Length = 719

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 183/433 (42%), Gaps = 67/433 (15%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLA 57
           M  ++N+  P+ + +AL+E  +     +QE  +   +R+ +D+L +A+TGSGKT+AFG+ 
Sbjct: 162 MSAWQNLYVPETVLKALAELRFTKPMPIQEQCIPVAIRDKRDILGAAETGSGKTLAFGIP 221

Query: 58  LASTLLAENDR----------------------------------FSPASAPLALAIAPT 83
           L   L+ + +R                                    P  A  AL + PT
Sbjct: 222 LLHHLMEDRERNLLENTENAEIDEDDEHMSDFEDAEPVSKEEIEETQPTKALPALVLTPT 281

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA+QV + L  +   T +   V +GG++  ++ R L     IV+ TPGRL + +    
Sbjct: 282 RELAIQVKKHLTQVAKHTKLWSTVVVGGMAQQKQIRLLNKEPDIVIATPGRLWELLESGH 341

Query: 144 LN---ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNY 200
                I  L+ +V+DEAD ML+ G  +++  +L+    K+        I  A  T     
Sbjct: 342 PYLSTIHKLRYLVIDEADRMLEHGHFEELNKLLEVINLKKSKTKRQTFIFSATLTTVHFT 401

Query: 201 QKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--------------------------- 233
                    AS N + + +      + + ++                             
Sbjct: 402 PNRPNFPTQASSNTKDTKLSKLMKKIGVRNKPFVADLTTKKLTAEKLSEAKIICQPKEKD 461

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
             +           ++F ++   +   + VL       + +  ++ Q++R   L   ++ 
Sbjct: 462 FYLYYFIKSHPGRTLIFTNSIDCIFHLSGVLDALGCNPLHIHAKMQQRQRLKHLDRFQEN 521

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
              + IA+DVAARG+D+P ++ VIH ++    E  +HRSGR+ R+G  G+S+  +  +  
Sbjct: 522 PNAIMIASDVAARGLDIPGVKYVIHYQVPRTMETYIHRSGRSARSGEDGLSLLFVSSDEM 581

Query: 354 RRAERLFREANVS 366
              +R+ R  +  
Sbjct: 582 SFYKRICRSLDKE 594


>gi|328771766|gb|EGF81805.1| hypothetical protein BATDEDRAFT_16042 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 584

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/399 (29%), Positives = 193/399 (48%), Gaps = 29/399 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            + + I  A+S  GY   T +Q   +   L+ +D++  A+TGSGKT +F + +   +   
Sbjct: 167 ELSETILGAISRIGYKEPTPIQRQAIPMGLQNRDIIGIAETGSGKTASFVIPMLKFITEM 226

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                 + +  P AL +APTRELA Q+  E      + G +    +GG +V  +  +L+N
Sbjct: 227 PPLTEINSSQGPYALILAPTRELAQQIESETSKFAREMGFICVSIVGGHAVEGQAFNLRN 286

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           GAHIV+ TPGRL D +  + L +S    VV+DEAD M+D+GF  D++FILD+ P      
Sbjct: 287 GAHIVIATPGRLRDCLEQRILVLSQCTYVVMDEADRMVDMGFEPDLKFILDAMPVSNIKP 346

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                                R+ +MFSAT+  A+  LAK Y +    V I    +    
Sbjct: 347 DSDESENVQLLRELTGKVTPFRQTVMFSATMPVAVERLAKAYLRRPATVTIGIAGQVVDR 406

Query: 219 IDYRAVLVALSDRDNAIVNIL--RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
           I+ R  ++    R  + +  +          IVF + +       + L     +   L G
Sbjct: 407 IEQRVEMINDDGRKLSRLQEILTSRQFEPPMIVFVNQKKGCEVIARALDRLGLKSTTLHG 466

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             SQ++R  +L  ++ G   + +ATDVA RGID+ ++ +VI+ +++ + E+  HR GRTG
Sbjct: 467 GKSQEQREASLLGLKQGTKDILVATDVAGRGIDVKNVSVVINFDMAKSIEDYTHRIGRTG 526

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           RAG+KG ++  +          L +    S + +  P +
Sbjct: 527 RAGKKGTAITFLSNYDTDVMYDLRQMILKSPISKVPPEL 565


>gi|303390845|ref|XP_003073653.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302800|gb|ADM12293.1| ATP-dependent RNA helicase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 483

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/361 (25%), Positives = 184/361 (50%), Gaps = 7/361 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + + GY   + VQ A +   L+ +D+LV ++ G+GKT ++ + + + +  E 
Sbjct: 119 LKPKLLKRIQDIGYNFPSPVQVASIPHALKGRDMLVRSKNGTGKTASYTIPILNAINPEE 178

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                      + + P RELA+Q+ R ++ L    GV+ A  +GG ++  +   + NG H
Sbjct: 179 LNI------QGIILVPIRELALQISRNVKRLSEGMGVISAPIVGGTNMQDDIIRVSNGVH 232

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D I  K   +S    +V DEAD++LD+ F + +  +LD  P++R +L++S
Sbjct: 233 VMVGTPGRIVDLIEKKIGVLSKKIILVFDEADKLLDVTFGETVTRLLDILPRERHILLYS 292

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT    +T   K Y +D + +N+  E            +V  S++   + ++L       
Sbjct: 293 ATFPYFVTGFIKRYMRDPLCLNLMKELVPVGV-KQFYTIVKPSEKLLCLRSLLLKLKINQ 351

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++FC+   +V      + E       +  +++Q++R+        G+ ++ +ATD+  R
Sbjct: 352 CVIFCNNIKTVELLAMKVTEIGIPSYFIHSKMTQEDRNIVFHNFLKGKCKILVATDLITR 411

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+P+   VI+ ++  +PE+ LHR GR GR G  G+++ ++    +     +  +    
Sbjct: 412 GVDVPNTNYVINFDIPKSPESYLHRIGRAGRFGTPGVAISLVTTEEKEMLADIEVKLGKE 471

Query: 367 V 367
           V
Sbjct: 472 V 472


>gi|329725341|gb|EGG61824.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU144]
          Length = 448

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 196/424 (46%), Gaps = 17/424 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + EA+    +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           + ++         P A+ +APTRELA Q+ +    L      +      G +   ++++ 
Sbjct: 66  IESDIQE------PQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   +++GTP R+ D      L+      +++DEAD M+DLG  +D++ I      + 
Sbjct: 120 CSHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDEN 179

Query: 181 RM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               +FSATI  ++      Y      V +  +     +I++  +    S + +  + ++
Sbjct: 180 AHLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC++R +       L +   ++  + G L+ +ER   ++ +R+   +  I
Sbjct: 240 DILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     +
Sbjct: 300 ASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLI 359

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHD 412
                +  NV +       ++A   R +++   D L  +    ++   K+ V  +  K  
Sbjct: 360 EDRGYKFENVDIKNGELKPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPVYKKKF 419

Query: 413 PEKI 416
            +++
Sbjct: 420 KQEV 423


>gi|41407579|ref|NP_960415.1| hypothetical protein MAP1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395932|gb|AAS03798.1| hypothetical protein MAP_1481c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 497

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 6/371 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++  P  I +AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L 
Sbjct: 48  KTFADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLV 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N R +    P  L +APTRELA Q+   LE L A  G+ V+   GGVS HR+  
Sbjct: 108 GRLSTGNRRPAR---PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVT 164

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV  PGRL D +R + + +  ++  V+DEAD M DLGF   +  IL ++P  
Sbjct: 165 ALKAGVDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPND 224

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L   + +DAV  ++   N   S++ +       S +    +   
Sbjct: 225 GQRLLFSATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHV-FHVDSVQAKKELVHR 283

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    I+F  T+    +  + L E     V L G LSQ  R   L M   G ARV +
Sbjct: 284 LASGTGRRILFLRTKHQARKVARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLV 343

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    +     L
Sbjct: 344 ATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRAL 403

Query: 360 FREANVSVVWE 370
            R+A + V  +
Sbjct: 404 MRKAGIDVAPQ 414


>gi|224126463|ref|XP_002319844.1| predicted protein [Populus trichocarpa]
 gi|222858220|gb|EEE95767.1| predicted protein [Populus trichocarpa]
          Length = 766

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/502 (24%), Positives = 217/502 (43%), Gaps = 38/502 (7%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +P  +   + L    +  +T +Q A L   L  +D+L +A+TGSGKT+AF + + 
Sbjct: 68  TMFKELPLSKRTQDGLKRANFSKMTDIQRASLPHSLCGRDILGAAKTGSGKTLAFIIPIL 127

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  R+        + I+PTRELA Q+   L+ +         + IGG       +
Sbjct: 128 EKLYKE--RWGSEDGVGGIIISPTRELAGQLFDVLKTVGKFHNFSAGLLIGGRKEVEMEK 185

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  N   I+V TPGRL  H+      + S L+ +VLDEAD +LD+GF+  +  I+   PK
Sbjct: 186 EHVNALSILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVAQLPK 245

Query: 179 KRRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT + +I           + + V+  +E    S +   A++V L  + + + 
Sbjct: 246 HRQTLLFSATQTKSIQDLARLSLKDPEYISVHEDAETATPSRLQQTAMIVPLEQKLDMLW 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA-LQMMRDGRA 295
           + ++ H     +VF S+   V    +   +    +         ++     +        
Sbjct: 306 SFVKAHLNSKILVFLSSCKQVKFVFEAFKKLRPGIPLKCLHGRMKQEKRMGIYSQFCESH 365

Query: 296 RVCIATDVAARGIDL-PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            V  +TDVA+RG+D    ++ V+  +   +  + +HR GRT R    G SV  +  +  +
Sbjct: 366 SVLFSTDVASRGLDFNKAVDWVVQVDCPDDVASYIHRVGRTARYLAGGRSVLFLMPSEMK 425

Query: 355 RAERLFREANVSVVWEPAP-----------SVEAIRERDAQRILQDPL--FLDSIQ-GDE 400
             E+L + A + V +  A            S   ++  D Q++ Q     +L SI    +
Sbjct: 426 MLEKL-QTAKIPVQFIKANTKRLQPVSGLLSALLVKYPDMQQLAQRAFITYLRSIHIQKD 484

Query: 401 KKMVDVLLAKHDPEKIAAGF-------LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           K++ DVL  K   E+ +A         +R     +   +     +L+   D  ++D+   
Sbjct: 485 KEVFDVL--KLSIEEFSASLGLPMTPKVRFLNQKIKGKKAFGKSALLESEDSEKEDAAEI 542

Query: 454 KVGGGSRDNFKGSSWFSLSVGS 475
                   NF+       SVG 
Sbjct: 543 PGEKLDIGNFREE-----SVGR 559


>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
          Length = 838

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 33/366 (9%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           + +A++ +G+   T +Q   +   L   DV+  A+TGSGKT AF + +   L   + R  
Sbjct: 100 LLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKTAAFVIPMVERLKTHSVRV- 158

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
                 AL ++P+RELA+Q  + ++     T + V + +GG S+  +   +     IV+ 
Sbjct: 159 ---GMRALVLSPSRELALQTMKVVKEFGRGTDLKVVLLVGGDSLEEQFGYMAGNPDIVIA 215

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR         L++  ++ VV DEAD + ++GF   +  IL S P  R+ L+FSAT+ 
Sbjct: 216 TPGRFMHLKVEMELDLRSVQYVVFDEADRLFEMGFSAQLTEILHSLPSNRQTLLFSATLP 275

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
            +    A  +               H                             + IVF
Sbjct: 276 NSEKEGALLHLLQDRTHQFHETASTH-----------------------------STIVF 306

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+  V    +++++  FQV  + G L Q  R N +   R G   + + TDVAARGID+
Sbjct: 307 AATKHHVEYLAQLISQAGFQVSYVYGTLDQVARRNQVARFRTGDTSILVVTDVAARGIDI 366

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           P L  VI+ +    P+  +HR GRT RAGR+G +   +          L       +V  
Sbjct: 367 PLLSNVINYDFPPQPKVFVHRVGRTARAGRRGWAYSFVRAEDAPYLLDLQLFLGKKLVLS 426

Query: 371 PAPSVE 376
            + S E
Sbjct: 427 KSGSAE 432


>gi|242219333|ref|XP_002475447.1| predicted protein [Postia placenta Mad-698-R]
 gi|220725348|gb|EED79339.1| predicted protein [Postia placenta Mad-698-R]
          Length = 806

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 111/402 (27%), Positives = 185/402 (46%), Gaps = 14/402 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F ++P   +    L +  +V++T +Q   L   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 53  LKSFADLPVSGLTKRGLKKAFFVDMTDIQAKSLPVSLKGKDVLGAARTGSGKTLAFLVPV 112

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++ P     AL I+PTRELAVQ+   L  +         + IGG +V  ER
Sbjct: 113 LEILY--RRKWGPQDGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNVKDER 170

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L    +  G    +L+ +VLDEAD +LD+GF+  +  +L   PK
Sbjct: 171 ERLSRMNILVATPGRLLQHMDQTIGFECDNLQMLVLDEADRILDMGFQRTLSALLSHLPK 230

Query: 179 KRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R+ L+FSAT + +++ LA+            +  + +     ++   VL  L  + + +
Sbjct: 231 ARQTLLFSATQTDSVSDLARLSLKDPVYIGVHDSDNASAMPKSLEQHYVLCTLDQKLDLL 290

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + L+ H     +VF S+   V    +        V  L     Q++ +     Q     
Sbjct: 291 WSFLKSHLQSKVLVFLSSCKQVRFVFETFRRLHPGVPLLHLHGKQKQMTRLATFQRFTGM 350

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
           +  V  ATD+AARG+D P +  V+  +   + E  +HR GRT R    G   +F++P   
Sbjct: 351 KHAVLFATDIAARGLDFPAVNWVLQVDAPEDAETYIHRVGRTARYESAGKGLLFLMPSEE 410

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
           +   + L   A  S+  E    + A + +  +  LQ+  F D
Sbjct: 411 EGMTQAL---AKKSITAEKI-KIRASKTQSIENQLQNLAFQD 448


>gi|332098054|gb|EGJ03027.1| ATP-independent RNA helicase dbpA [Shigella dysenteriae 155-74]
          Length = 432

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 188/363 (51%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G  RV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSTRVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     +++ W+  P   +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQITLNWQTPPVNSSIVPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 51.9 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   +   + +   V        
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQITLNWQTPPVNSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQDGK 420


>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 427

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 126/384 (32%), Positives = 205/384 (53%), Gaps = 1/384 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+  A++E+GY   T VQ   +   L+  DV+ +AQTG+GKT  F L +   L    
Sbjct: 8   LSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPMLERLSQNR 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                     AL + PTRELA QV   ++    K  +  AV  GGV ++ + + L+ G  
Sbjct: 68  PEGGRRR-VRALILTPTRELAAQVRDSVKTYGGKLPLKTAVIFGGVGMNPQIQTLRRGVD 126

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL DH+    +++S ++ +VLDEAD MLD+GF  DI  ++ + PK+R+ LMFS
Sbjct: 127 IVVATPGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVPKQRQTLMFS 186

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  I  LA+   ++  ++ +A+ N    +++ R   V+  ++   + N+++    + 
Sbjct: 187 ATFSKEIRQLAEGMLRNPTQIEVAARNTAAENVNQRVHPVSRGEKRALLSNLIQDGDWRQ 246

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  T+    R  + L +      A+ G  SQ  R+ AL   + GR RV +ATD+AAR
Sbjct: 247 VLVFTRTKHGADRLARQLDQDGLSSAAIHGNKSQSARTKALAQFKQGRVRVLVATDIAAR 306

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+D+  L  V++ EL + PE+ +HR GRTGRAGR G ++ ++  +  +  + + +     
Sbjct: 307 GLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGRGGEALSLVCVDEHKLLDGIHKLLKRP 366

Query: 367 VVWEPAPSVEAIRERDAQRILQDP 390
           +     P  E       Q + + P
Sbjct: 367 IDQHIVPGFEPDPSERPQPLFKKP 390


>gi|310791038|gb|EFQ26567.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
          Length = 433

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 175/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   L   D++  A++G GKT  F L     +    
Sbjct: 56  LKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQ 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++ +
Sbjct: 116 GEVS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKE 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD    R D++ I  ++P +++
Sbjct: 170 TCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I  + + + ++     +  + +       +  +      ++  +  +L 
Sbjct: 230 VMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 290 DLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TDV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+++  +  +  Q   + +
Sbjct: 350 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKSI 409

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 410 EKRFEVALPEFPKEGIDA 427


>gi|86742488|ref|YP_482888.1| DEAD/DEAH box helicase-like protein [Frankia sp. CcI3]
 gi|86569350|gb|ABD13159.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
          Length = 649

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/344 (35%), Positives = 183/344 (53%), Gaps = 4/344 (1%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+E G V+   +QE  L   L   D++  A+TG+GKT+AFG+ +  T+LA  +      
Sbjct: 99  ALTEAGIVHAFPIQELTLPLALARNDIIGQARTGTGKTLAFGVPVVQTVLAAKEGADGR- 157

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P AL + PTREL VQV  ++    A+ G+ V    GG +   +   L+ G  IVVGTPG
Sbjct: 158 -PQALVVVPTRELCVQVTADVTRAGARRGLRVLSVYGGRAYEPQLSALRAGVDIVVGTPG 216

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D  R   L+++ +  +VLDEADEMLDLGF  D+E I+   P +R+ ++FSAT+   +
Sbjct: 217 RLLDLARQHVLDLAGVGTLVLDEADEMLDLGFLPDVERIMSQLPTERQTMLFSATMPGPV 276

Query: 194 TT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            +       +   VR     E R               D+   +  +L+  G   A+VF 
Sbjct: 277 ISLARRFMKRPVHVRAEQPDEGRTVPTTRQHVFRAHALDKMEVLARVLQAGGRGLAMVFV 336

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
            TR +  +  + LA+  F   A+ G+L Q +R  AL+  R G+  V +ATDVAARGID+ 
Sbjct: 337 RTRRTADKVAEDLAKRGFAAAAVHGDLGQGQREQALRAFRSGKVDVLVATDVAARGIDIN 396

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            +  V++ +   +    LHR GRTGRAG  G+++  +  +   R
Sbjct: 397 GVTHVVNYQCPEDENVYLHRIGRTGRAGESGVAITFVDWDDLPR 440


>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238658654|emb|CAZ29706.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 829

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 169/356 (47%), Gaps = 7/356 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
             + ++GY   T +Q   +   L  +DV+  A+TGSGKT AF + L       +      
Sbjct: 43  NGIIKKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGKTAAFLIPLFEKFPCHSP----- 97

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           + P AL ++PTRELA+Q     + L   T +   + +GG  +  +   L     I++ TP
Sbjct: 98  AGPRALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKMEEQFAALHKSPDIIIATP 157

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           GR    +    L++  ++ VV DE D + +LGF + +   L   P+ R+ L+FSAT+   
Sbjct: 158 GRFLHVLMEMNLSLKSIEYVVFDEGDRLFELGFAEQLSETLKRLPRSRQTLIFSATLPKN 217

Query: 193 ITTLAKNYQKDAV--RVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +   A+    D +  R+++ S+  Q   + +   L    +     +     H  + A+VF
Sbjct: 218 LVEFARAGLVDPILLRLDLHSKLSQDLKLAHITCLPEEKNVILVHLLGKVIHKDEQAVVF 277

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
            +T+  V  F  +L +  F    +   L    R+ AL+  R   ARV + TDVAARG+D+
Sbjct: 278 FATKHHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRTARVLLVTDVAARGVDI 337

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           P L+ VI+    + P+  LHR GR  RAGR+G++  ++          +F      
Sbjct: 338 PHLDNVINFHFPAQPKLFLHRVGRVARAGRRGVAYSLVDPEELPYLLDVFMFLGKE 393


>gi|18416493|ref|NP_568245.1| DEAD/DEAH box helicase, putative [Arabidopsis thaliana]
 gi|186522075|ref|NP_568244.2| ATP binding / ATP-dependent helicase/ helicase/ nucleic acid
           binding [Arabidopsis thaliana]
 gi|108861899|sp|Q9LFN6|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56
 gi|322510107|sp|Q56XG6|RH15_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 15
 gi|14190381|gb|AAK55671.1|AF378868_1 AT5g11200/F2I11_90 [Arabidopsis thaliana]
 gi|15450405|gb|AAK96496.1| AT5g11170/F2I11_60 [Arabidopsis thaliana]
 gi|16323360|gb|AAL15393.1| AT5g11200/F2I11_90 [Arabidopsis thaliana]
 gi|24111365|gb|AAN46806.1| At5g11170/F2I11_60 [Arabidopsis thaliana]
 gi|110740954|dbj|BAE98572.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
 gi|332004259|gb|AED91642.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
 gi|332004262|gb|AED91645.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
          Length = 427

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 113 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 407 RFEVDIKELP 416


>gi|8953382|emb|CAB96655.1| DEAD BOX RNA helicase RH15 [Arabidopsis thaliana]
          Length = 427

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 113 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 407 RFEVDIKELP 416


>gi|299530392|ref|ZP_07043815.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
 gi|298721617|gb|EFI62551.1| hypothetical protein CTS44_06434 [Comamonas testosteroni S44]
          Length = 430

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 111/382 (29%), Positives = 179/382 (46%), Gaps = 12/382 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+ 
Sbjct: 8   LRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQK 67

Query: 67  DRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
              +    PLA L + PTRELA+QV   L  +  +        V  GGVS++ +   L+ 
Sbjct: 68  RGHTGFVRPLATLILVPTRELALQVHESLNDITRQLREQPRSRVVYGGVSINPQMMQLRG 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            A  +V TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L
Sbjct: 128 SADFLVATPGRLLDLVEHNAVRLNAVQHLVLDEADRLLDQGFAEELNRVLALLPAKRQTL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDR----DNA 234
           + SAT    +  LA     D VRV +        +    +I  RA+ V    R       
Sbjct: 188 LLSATFPQNVEALATRLLHDPVRVQVDADQAAEHSTSPENISQRAIAVDGPRRTQLLRQL 247

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +         + A+VF + R +       L +         G++SQ  R + L   +  R
Sbjct: 248 VKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKDVLDQFKAKR 307

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ I TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++  +      
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPADTA 367

Query: 355 RAERLFREANVSVVWEPAPSVE 376
             + + +   + +  E     E
Sbjct: 368 HWKLICKRNQLEIDLEQIQGFE 389


>gi|221065934|ref|ZP_03542039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
 gi|220710957|gb|EED66325.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
          Length = 430

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 180/382 (47%), Gaps = 12/382 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A  + G  + T +Q   +   L  +D+   A TGSGKT+A+ L L    LA+ 
Sbjct: 8   LRAELLDATLDLGLRDATPIQTEAIPAVLAGRDLWACAPTGSGKTMAYLLPLLQAWLAQK 67

Query: 67  DRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDLQN 123
              +    PLA L + PTRELA+QV   L  +  +        V  GGVS++ +   L+ 
Sbjct: 68  RGQTGFVRPLATLILVPTRELALQVHESLSDITRQLREQPRSRVVYGGVSINPQMMQLRG 127

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            A  +V TPGRL D +    + ++ ++ +VLDEAD +LD GF +++  +L   P KR+ L
Sbjct: 128 SADFLVATPGRLLDLVENNAVRLNTVQHLVLDEADRLLDQGFAEELNRVLALLPAKRQTL 187

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIA-----SENRQHSDIDYRAVLVALSDR----DNA 234
           +FSAT    +  LA     D VRV +        +    +I  RA+ V  + R       
Sbjct: 188 LFSATFPQNVEALAARLLHDPVRVQVDADQAAEHSASPENISQRAIAVDSNRRTQLLRQL 247

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           +         + A+VF + R +       L +         G++SQ  R   L   +  R
Sbjct: 248 VKQGENQPEWERALVFVAKRHTAEMLADKLYKAGIYATTFHGDMSQGARKEVLDQFKAKR 307

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ I TD+AARGID+  L  VI+ +L  +P + +HR GRTGRAG  G ++  +      
Sbjct: 308 WQLLITTDLAARGIDIAQLPTVINYDLPRSPADYIHRIGRTGRAGHAGCAITFVSPADTV 367

Query: 355 RAERLFREANVSVVWEPAPSVE 376
             + + +   + +  E     E
Sbjct: 368 HWQLICKRNQLDIALEQLQGFE 389


>gi|297200725|ref|ZP_06918122.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
 gi|197712294|gb|EDY56328.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 721

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 127/443 (28%), Positives = 212/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L   +
Sbjct: 35  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARL---S 91

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+    + G+ + V  GG S+  +   L+ G  
Sbjct: 92  GGRTEKHRPRAVILTPTRELAMQVADALQPYGDQLGLKMKVVCGGTSMSNQIYALERGVD 151

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++  ++  V+DEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 152 VLVATPGRLRDLINRGACSLQDIEVAVIDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 211

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V    +D A V          
Sbjct: 212 ATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV--KPKDKAPVTAAIASRKGR 269

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L E   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 270 TIIFVRTQLGADRIAEQLRESGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 329

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 330 GIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMEDAGVD 389

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A     A+  +     +  +Q +         A+ +  ++     R  R 
Sbjct: 390 AGRHIINSGTAFEPEVAE--ITGARSMTEVQSESAANAAQQ-AEREVAQLTKELERAQRR 446

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
                EE   +   + R+R  D 
Sbjct: 447 ATELREEADRLVARAARERGEDP 469


>gi|149246473|ref|XP_001527693.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152013477|sp|A5DS77|DBP2_LODEL RecName: Full=ATP-dependent RNA helicase DBP2
 gi|146447647|gb|EDK42035.1| hypothetical protein LELG_00213 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 552

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 177/379 (46%), Gaps = 10/379 (2%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+    P  +   L  +G+   T +Q       L  +D++  A TGSGKT+++ L  
Sbjct: 115 ITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 174

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              + A+         P+ L +APTRELA Q+  E     A + +      GG     + 
Sbjct: 175 IVHINAQ-PLLKRGDGPIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQI 233

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL NG  I + TPGRL D +     N+  +  +VLDEAD MLD+GF   I  I+D    
Sbjct: 234 RDLANGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 293

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDRDNA 234
            R+ LM+SAT    +  LA++Y  + ++V I S     +   + I          D    
Sbjct: 294 DRQTLMWSATWPKEVQNLARDYLDNPIQVTIGSLELAASHTITQIVQVVTEYQKRDLLVK 353

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            +           +VF ST+ +    T  L    +  +A+ G+  Q ER   L+  R G 
Sbjct: 354 HLESALADSNSKVLVFASTKRTCDEVTSYLRADGWPALAIHGDKEQHERDWVLKEFRQGS 413

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             + +ATDVAARGID+  +  V++ ++  N E+ +HR GRTGR G  G ++     N ++
Sbjct: 414 HSIMVATDVAARGIDVKGITHVVNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKK 473

Query: 355 ---RAERLFREANVSVVWE 370
                 ++ REA  ++  E
Sbjct: 474 LGGDLCKIMREAKQTIPPE 492


>gi|71021007|ref|XP_760734.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
 gi|46100328|gb|EAK85561.1| hypothetical protein UM04587.1 [Ustilago maydis 521]
          Length = 645

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/393 (27%), Positives = 188/393 (47%), Gaps = 22/393 (5%)

Query: 1   MKIFENIPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           MK    +P+ + + L  ++  V  + +Q   L      +D++  A TGSGKT+AF L + 
Sbjct: 214 MK----VPECVIDYLKTQKKIVKPSPIQMQGLPTAFSGRDMIGIAFTGSGKTLAFSLPIL 269

Query: 60  STLLAENDR--FSPASAPLALAIAPTRELAVQVGRELE------WLYAKTGVVVAVCIGG 111
                E  R  F+    P+ + + P+RELA Q    ++             + V +CIGG
Sbjct: 270 MLAAEEERRLPFTRGEGPVGMIVCPSRELARQTYESIKGLAEALVQGGYPQIGVLLCIGG 329

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
           +S+  +   +  G HIVV TPGRL D +  K   +   K + LDEAD M+D+GF +D+  
Sbjct: 330 ISMAEQHHTMSKGFHIVVATPGRLQDMLTKKKFTLDCCKYLCLDEADRMIDMGFEEDVRN 389

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR 231
           I+    ++R+ L+FSAT+   I   A+      V +N+        DI      V    +
Sbjct: 390 IMGFFKQQRQTLLFSATMPKKIQDFAEQSLIRPVIINVGRAGAASLDIIQEVEYVKQEAK 449

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              ++  L+       I+F   +  V    + L     + VA+ G  +Q ER  A++  +
Sbjct: 450 MVYLLECLQKTAPP-VIIFSDNKNEVDDIQEYLLLKGVEAVAIHGSKTQDEREYAIRAFK 508

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G+  V +A+ VA++G+D  +++ VI+  +    E+ +H+ GRTGR+G+ G++   +  N
Sbjct: 509 SGQKDVMVASGVASKGLDFSEIQHVINYTMPKEIEDYVHQIGRTGRSGKTGIATTFVNAN 568

Query: 352 MQR----RAERLFREANVSVVWEPAPSVEAIRE 380
            Q       + L  EA   +     P + AI++
Sbjct: 569 TQEQTLLDLKYLLIEAKQRIP----PFLAAIQD 597


>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
          Length = 396

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/356 (34%), Positives = 181/356 (50%), Gaps = 22/356 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL---- 62
           +   I  AL   GYV  T VQ+  +   +  +D+LVS+ TGSGKT AF L          
Sbjct: 41  LSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIERFAQLQ 100

Query: 63  ----------------LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VV 105
                                R  P + P  L + PTRELA+QV                
Sbjct: 101 KAQAQQPRAPREPSNGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKHLRRLRT 160

Query: 106 AVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGF 165
              +GGV+  ++   L     I+V TPGRL DH+    +++S LK +VLDEAD MLD+GF
Sbjct: 161 VSILGGVAYGQQLMLLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGF 220

Query: 166 RDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
            +DIE I+D++P+ R+ ++FSAT+   I +L     KD  R+ I       ++I      
Sbjct: 221 IEDIETIVDATPESRQTMLFSATLDGKIGSLTSRLLKDPERIEIQQRLESRANIAQTVHY 280

Query: 226 -VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
                 +D  + ++LR +    AI+F +T+    +    LA+  F+  AL G+L Q  R+
Sbjct: 281 VDDRDHKDRLLDHLLRDNALDQAIIFTATKIDADQLAGRLADAGFESAALHGDLPQGARN 340

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
             ++ +R+ R RV +ATDVAARGID+P +  V + +L    E+ +HR GRTGRAGR
Sbjct: 341 RTIRALRERRVRVLVATDVAARGIDIPGITHVFNYDLPKFAEDYVHRIGRTGRAGR 396


>gi|319778865|ref|YP_004129778.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
 gi|317108889|gb|ADU91635.1| ATP-dependent RNA helicase DbpA [Taylorella equigenitalis MCE9]
          Length = 457

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 132/408 (32%), Positives = 213/408 (52%), Gaps = 15/408 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F  +P  +     LS  G++ +  VQ   L   L   DV   A+TGSGKT+AFGL +
Sbjct: 1   MQNFSELPLSESQISILSSLGFIQMRPVQARSLPHILEGSDVRTLAKTGSGKTLAFGLGI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHRE 117
              +           A   L + PT ELA QV +E+  L      +  +   GGV++  +
Sbjct: 61  IQKINPS------FFACQGLVLTPTHELADQVAQEIRKLARALPNIKVLTLCGGVALRPQ 114

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++GAHI+VGTPGR+ D I+   L++S +K  VLDE D MLD+GF DDI  I  ++P
Sbjct: 115 IESLKHGAHIIVGTPGRILDLIQRGDLDLSKVKVFVLDECDRMLDMGFFDDIGEISKATP 174

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            +++ L+FSAT    I  +++ +Q++ V + +  E +  +++D+     + S+R    V 
Sbjct: 175 LRKQTLLFSATFPEHIKKISEGFQRNPVHIELIEEEKVPTNLDHIFFKTSDSERFAHSVQ 234

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           IL+++   + + FC+TR    + +  L E       L GE+ ++ER + L    +    V
Sbjct: 235 ILKHYQPISTLAFCNTRTQCEKLSSFLNEQNISSKFLHGEMEKREREDVLLQFSNKSLSV 294

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  L+ V++ ELS N    +HR GRTGR   +G+   ++      R +
Sbjct: 295 LVATDVAARGLDIEGLDAVLNIELSPNVPTHIHRIGRTGRHSDRGLVFNLVTPEEMYRFD 354

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           R+  +  +   WE  PS         +R L  P+   SI+G +K  + 
Sbjct: 355 RIDAQIPLESKWEKIPS------NTRKRNLVAPMRTISIKGGKKDKLR 396



 Score = 51.5 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%)

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLMP 486
            L  PEE+     +  +                R+        S+  G K K     L+ 
Sbjct: 343 NLVTPEEMYRFDRIDAQIPLESKWEKIPSNTRKRNLVAPMRTISIKGGKKDKLRKVDLIG 402

Query: 487 MLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTV 525
            + +   I  + IG I V   ++F+ V  +  + +   +
Sbjct: 403 AMTKHLQIPFEDIGKIHVADFVSFIAVKHENAEDILNRM 441


>gi|149743843|ref|XP_001493676.1| PREDICTED: similar to Probable ATP-dependent RNA helicase DDX59
           (DEAD box protein 59) (Zinc finger HIT domain-containing
           protein 5) [Equus caballus]
          Length = 616

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 108/421 (25%), Positives = 194/421 (46%), Gaps = 24/421 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L E GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 202 FEHCGFPEALNHNLKEAGYEVPTPIQMQMVPVGLLGRDILASADTGSGKTAAFLLPVILR 261

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 262 ALLE------SKTPAALILTPTRELAIQIERQAKELMTGLPRMKTVLLVGGLPLPPQLHR 315

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   +++  +K VV+DEAD ML +GF+  +  +L++ P+  
Sbjct: 316 LRQHVKVIIATPGRLLDIIKQNAVDLCGIKIVVVDEADTMLKMGFQQQVLDVLENVPQDC 375

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   S +          A   +   I+N
Sbjct: 376 QTILVSATIPTSIEQLAGQLLHNPVRIVTGEKNLPCSSVRQIILWIEEPAKKKKLFEILN 435

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + V++  E SQ ER N L+ + +G   V
Sbjct: 436 DKKLFKPPVLVFVDCKLGADLLSEAVQKVTGLKSVSIHSEKSQTERRNILKGLLEGDYEV 495

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  ++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 496 VVSTGVLGRGLDLVSVKLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFW 555

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            + +    +    P             ++L  P   D  + ++++             + 
Sbjct: 556 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQREKQTQNDLVTEANLM 603

Query: 418 A 418
           A
Sbjct: 604 A 604


>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
          Length = 909

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 9/381 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L A  
Sbjct: 102 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 161 ---SAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  +++ +  +    +LV    +      +        
Sbjct: 278 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQ 337

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L Q  R   L      +    I TD+A
Sbjct: 338 DQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLA 397

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 398 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457

Query: 365 VSVVWE---PAPSVEAIRERD 382
            SV        PSV     RD
Sbjct: 458 RSVTLARPCEEPSVADAVGRD 478


>gi|150025165|ref|YP_001295991.1| ATP-dependent RNA helicase RhlE [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771706|emb|CAL43180.1| Putative ATP-dependent RNA helicase RhlE [Flavobacterium
           psychrophilum JIP02/86]
          Length = 448

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/418 (26%), Positives = 189/418 (45%), Gaps = 24/418 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE  N+P+ + +AL++      T +QE      +  +D++  AQTG+GKT A+ L L
Sbjct: 1   MASFEQFNLPKSVQKALNDLQLTTPTPIQEKSFAVIMSGRDMMGIAQTGTGKTFAYLLPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
                 +   F+  + P  + + PTREL VQV  E+E L     V      GGV+++ ++
Sbjct: 61  L-----KQYTFTNTNTPKIVILVPTRELVVQVVEEVEKLTKYMSVSTLGIYGGVNINTQK 115

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +  G  I+VGTPGR+ D      +     + +V+DE DEML+LGFR  I  IL     
Sbjct: 116 KQVYEGVDILVGTPGRVMDLALDAVIRFDDTQKLVIDEFDEMLNLGFRVQITSILAMLRT 175

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDN--AI 235
           KR+ ++FSAT++  +  +  +Y      V++A        I+     +   + + N    
Sbjct: 176 KRQNILFSATMTDEVDAILNDYFDFPEEVSLAMSGTPLEKIEQLSYNVPNFNTKVNLLKH 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +       ++  +   + + +     ++  +   Q   +    SQ  R   +   ++G  
Sbjct: 236 LLHTNEEMSRILVFVNNKKIADMLHERIEGDFPDQFGVIHSNKSQNYRLTTMATFQEGEL 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R  I TD+ ARG+D+ ++  VI+ E    PE  +HR GRTGRA   G+++  I    +  
Sbjct: 296 RGLITTDIMARGLDISNITHVINFEAPELPEQYIHRIGRTGRADASGIAISFIAPREEEI 355

Query: 356 ---AERLFREANVSVVWEPAPSVEAI--------RERDAQRILQDPLFLDSIQGDEKK 402
              AE L       +     P    I        +E++  + L   + L+      +K
Sbjct: 356 KFGAEVLM---GKEIEILDLPEEVEISKLLIGPEKEKEVIKFLLKKVKLEGGASHHEK 410


>gi|50843247|ref|YP_056474.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
 gi|50840849|gb|AAT83516.1| ATP-dependent RNA helicase [Propionibacterium acnes KPA171202]
          Length = 700

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 296 REDNR---PRALILSPTRELAMQIADALSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 352

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 353 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 412

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 413 ATLDGAVNKLVRRYMHEPVTHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 470

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 471 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 530

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 531 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 590

Query: 367 VVW 369
            V 
Sbjct: 591 PVE 593


>gi|301757641|ref|XP_002914657.1| PREDICTED: probable ATP-dependent RNA helicase DDX59-like
           [Ailuropoda melanoleuca]
 gi|281351210|gb|EFB26794.1| hypothetical protein PANDA_002576 [Ailuropoda melanoleuca]
          Length = 620

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 106/405 (26%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L + + 
Sbjct: 206 FEHCGFPEALNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVITR 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+  + +  +     +   + +GG+ +  +   
Sbjct: 266 ALCE------SKTPSALILTPTRELAIQIESQAKELMSGLPRMKTVLLVGGLPLPPQLYR 319

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+   + +  +K VV+DE D ML +GF+  +  IL++ P   
Sbjct: 320 LRQHVKVIIATPGRLLDIIKQSSVELRGMKIVVVDEVDTMLKMGFQQQVLDILENVPNDC 379

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA    ++ VR+    +N   S +          A   +   I+N
Sbjct: 380 QTILASATIPTSIEQLASQLLRNPVRIVTGEKNLPCSSVRQIILWVEEPAKKKKLFEILN 439

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + V++  E SQ ER N L+ + +G   V
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNILKGLLEGDYEV 499

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  ++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 500 VVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRVGRLGQHGTAITFINNNSKRLFW 559

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 560 DIAKRVKPTGSILPP------------QLLNSPYLHDQKRKEQQK 592


>gi|260790599|ref|XP_002590329.1| hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae]
 gi|229275521|gb|EEN46340.1| hypothetical protein BRAFLDRAFT_279393 [Branchiostoma floridae]
          Length = 689

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 170/374 (45%), Gaps = 8/374 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +   + L    Y   T VQ+  ++P L  +D+L +A+TGSGKT+AF L +
Sbjct: 57  IQKFSDLPLCRKTQQGLQAADYKFPTDVQKNSIHPALLGRDILGAAKTGSGKTLAFLLPV 116

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     ++S      AL I PTRELA Q+   L  +  K      + IGG  V  E 
Sbjct: 117 LEGLW--RLQWSQQDGLGALIITPTRELAYQIFEVLRKVGKKHDFSAGLVIGGKDVTEES 174

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + +     ++      L           ++L+ +VLDEAD +LDLGF   +  I+ + P 
Sbjct: 175 QQIYRTNIVICTPGRLLQHMDETAYFEATNLQILVLDEADRILDLGFAATMNAIIQNLPP 234

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
            R+ ++FSAT + ++  LA+   K+ V +++   ++  +        ++  L  + + + 
Sbjct: 235 TRQTMLFSATQTKSVKDLARLSLKNPVYISVHEHHKFSTPQKLKQSYLVCELHQKLDLLF 294

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + ++ H     +VF S+   V    +        +  L       +             +
Sbjct: 295 SFIKNHLRSKVLVFLSSCKQVRYVYEAFCRLQPGMSVLCLHGKMPQMKRVDVYNSFCRKQ 354

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
               +ATD+AARG+D P +  V+  +   + +  +HR+GRT R    G S+ V+  + +R
Sbjct: 355 HVCLLATDIAARGLDFPAVHWVLQLDCPEDADTYIHRAGRTARYESDGESLLVLMPSEER 414

Query: 355 RAERLFREANVSVV 368
           +  +   +  + V 
Sbjct: 415 QMLQQLTDKKIPVE 428


>gi|27468163|ref|NP_764800.1| ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57867091|ref|YP_188700.1| DEAD-box ATP dependent DNA helicase [Staphylococcus epidermidis
           RP62A]
 gi|251810975|ref|ZP_04825448.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876016|ref|ZP_06284883.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|293366481|ref|ZP_06613158.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315709|gb|AAO04844.1|AE016748_78 ATP-dependent RNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|57637749|gb|AAW54537.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           epidermidis RP62A]
 gi|251805485|gb|EES58142.1| ATP-dependent RNA helicase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295041|gb|EFA87568.1| DEAD/DEAH box helicase [Staphylococcus epidermidis SK135]
 gi|291319250|gb|EFE59619.1| DEAD/DEAH box family ATP-dependent RNA helicase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735213|gb|EGG71505.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU045]
 gi|329737135|gb|EGG73389.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU028]
          Length = 448

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 195/424 (45%), Gaps = 17/424 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+ + + EA+    +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLLPLIQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-HRERRD 120
           + ++         P A+ +APTRELA Q+ +    L      +      G +   ++++ 
Sbjct: 66  IESDIQE------PQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             +   +++GTP R+ D      L+      +++DEAD M+DLG  +D++ I      + 
Sbjct: 120 CSHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDDEN 179

Query: 181 RM-LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
               +FSATI  ++      Y      V +  +     +I++  +    S + +  + ++
Sbjct: 180 AHLAVFSATIPKSLQPFLNKYLSQPEFVEVDGKAHNKENIEFYLIPTKGSAKVDKTLELI 239

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   I+FC++R +       L +   ++  + G L+ +ER   ++ +R+   +  I
Sbjct: 240 DILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVI 299

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           A+D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     +
Sbjct: 300 ASDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEESNITLI 359

Query: 360 F----REANVSVVWEPAPSVEAIRERDAQRILQDPLFLD---SIQGDEKKMVDVLLAKHD 412
                +  NV +       ++A   R +++   D L  +    ++   K+ V     K  
Sbjct: 360 EDRGYKFENVDIKNGELKPIKAYNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKF 419

Query: 413 PEKI 416
            +++
Sbjct: 420 KQEV 423


>gi|282909394|ref|ZP_06317209.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282326664|gb|EFB56962.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus WW2703/97]
          Length = 467

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 125/434 (28%), Positives = 214/434 (49%), Gaps = 16/434 (3%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
           +L  AQTG+GKT AFG+ L   ++ +           +L +APTRELA+QV  +L     
Sbjct: 3   ILGQAQTGTGKTGAFGIPLIEKVVGKQ-------GVQSLILAPTRELAMQVAEQLREFSR 55

Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
             GV V    GG+ + R+ + L+ G  IVVGTPGR+ DH+  + L    +  ++LDEADE
Sbjct: 56  GQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADE 115

Query: 160 MLDLGFRDDIEFILDSSPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
           M+++GF DD+ FI+D  P  +R  M FSAT+  AI  L + + K    +   +       
Sbjct: 116 MMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQ 175

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I+    +V   ++ +   N L  H  + AIVF  T+  V   T  L    ++   L G++
Sbjct: 176 IEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDI 235

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q +R   L+  ++ +  + +ATDVAARG+D+  +  V + ++  + E+  HR GRTGRA
Sbjct: 236 TQAKRLEVLKKFKNDQINILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA 295

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQDPLFLDS 395
           G++G++V  +         ++       +     P  + +   RE D +  +++ +  +S
Sbjct: 296 GKEGIAVTFVNPIEMDYIRQIEDANGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKES 355

Query: 396 IQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKV 455
            +   K++   LL +++   + A  L      L    +   V L   +   R        
Sbjct: 356 -ESRLKRISTELLNEYNDVDLVAALL----QELIEANDEVEVQLTFEKPLSRKGRNGKPS 410

Query: 456 GGGSRDNFKGSSWF 469
           G  +R++ +G+  F
Sbjct: 411 GSRNRNSKRGNPKF 424


>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
 gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
          Length = 700

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/354 (25%), Positives = 156/354 (44%), Gaps = 5/354 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   L   +  KDV+  A+TGSGKT AF + +   L    
Sbjct: 26  LSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHT 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG+  +V +GG S+  +   +     
Sbjct: 86  AKV----GIRALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDSLEGQFAAIHTNPD 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGR    +    L +S ++ VV DEAD + ++GF + +  I+   P+ R+ L+FS
Sbjct: 142 IVVATPGRFLHVVMEMELKLSSVEYVVFDEADRLFEMGFAEQLHEIIHRLPESRQTLLFS 201

Query: 187 ATISPA-ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           AT+    +          A+                  V           +        +
Sbjct: 202 ATLPRLLVDFAKAGLCDPALVRLDVDTKLSEQLKVSDYVFSLELYTALMHLLQNVIKPTE 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F +T+  V    ++L         +   L Q  R+  +   +  +  V + TDVAA
Sbjct: 262 QTLIFAATKHHVEYLKEMLLSGGIDCSYVYSSLDQTARTINVGKFQHKKTMVMVVTDVAA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           RGID+P L+ VI+       +  +HR GR  RAGR G +  ++  +       L
Sbjct: 322 RGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDEVAHLLDL 375


>gi|50289845|ref|XP_447354.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74690916|sp|Q6FQZ0|DBP8_CANGA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|49526664|emb|CAG60291.1| unnamed protein product [Candida glabrata]
          Length = 437

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/377 (27%), Positives = 171/377 (45%), Gaps = 20/377 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + + E+L        T++Q   +   L+ +D +  A+TGSGKT+AF   + +    + 
Sbjct: 16  LSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQWSEDP 75

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +    + + PTRELA+Q+  +   L +   + VA+ +GG S+  +   LQ   H
Sbjct: 76  ------TGMFGIVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIVDQALQLQRKPH 129

Query: 127 IVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDI----------EFI 172
            ++ TPGRL  HI   G +       +K +VLDEAD +L   F +D+          E  
Sbjct: 130 FIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILLTETFSNDLKTCVGALPPKEKR 189

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                         A     +    +      V            + +Y  V   + +  
Sbjct: 190 QTLLFTATITDQVRALQDAPVQKGKQPLFCYEVENVDNVAIPSTLNTEYVLVPEHVKEAY 249

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +     +    AI+F +   +     + L     +V +L  ++ QQER+N++   R 
Sbjct: 250 LYQLLTCESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFRA 309

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
             ARV IATDVA+RG+D+P +ELVI+ ++ S+P+  +HRSGRT RAGRKG ++  I Q  
Sbjct: 310 NAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRD 369

Query: 353 QRRAERLFREANVSVVW 369
             R E +    N+ +  
Sbjct: 370 VSRIEAIEARINMKMTE 386


>gi|118389642|ref|XP_001027904.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89309674|gb|EAS07662.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 642

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/443 (24%), Positives = 211/443 (47%), Gaps = 11/443 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +F+++   +   +AL +  + N+T +Q   +   L+ +DVL +A+TGSGKT+AF +    
Sbjct: 152 LFDDLEVCKPTKDALKQMKFTNMTHIQSRTIPHLLKGRDVLGAAKTGSGKTLAFLIPAIE 211

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L   N   S  +  + +   PTRELA Q+    + L       + + IGG +   E   
Sbjct: 212 MLYKTNFVQSMGTGIIVI--TPTRELATQIYDVAKQLMFFHSKTLGLLIGGANRKAEAIK 269

Query: 121 LQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           L+ G ++++ TPGRL DH++   G    +L  +++DEAD +L +GF++++  IL   P  
Sbjct: 270 LKTGVNMIIATPGRLLDHLQNTAGFAYHNLLGLIIDEADAILRIGFQEELTEILKLLPID 329

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVN 237
           R+ ++FSAT +  I  LA+   K  + + +       +    +   V++    +   +  
Sbjct: 330 RQTVLFSATQNKKIDDLARLSLKQPIYIGVDDVAETSTVEGLEQGYVIIDADKKFRLLFT 389

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+    K  +VF S+  SV   + +L      V+ + G+  QQ+R N      +  + V
Sbjct: 390 FLQKQKKKKVMVFFSSCNSVKFHSDLLNYVDIPVLDIHGKQKQQKRLNTFYEFSNATSGV 449

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRA 356
            + TDVAARG+D+P+++ ++  +   + +  +HR GRT R A   G ++  +    +   
Sbjct: 450 LLCTDVAARGLDIPNVDWIVQYDPPDDTKEYIHRVGRTCRGANTTGKALLFLLPEEKDYL 509

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
           + L + A V++     P  +    +D   ++++   FL+    +  +      + H  + 
Sbjct: 510 KYL-KAAKVNLNEYEFPENKLANIQDQFDKLVERNYFLNRCAFEAFRSYLHSYSAHSLKD 568

Query: 416 IA-AGFLRIHRAGLCAPEEITPV 437
           I     L + + G     +I P 
Sbjct: 569 IFDVANLDLQKIGRSFGFKIPPR 591


>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
 gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
           P-loop hydrolase domain [Alteromonadales bacterium TW-7]
          Length = 435

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 181/371 (48%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IP+ +   L++  Y   T +Q   +   L   D++  A TGSGKT  F L +   L  E 
Sbjct: 16  IPE-LQARLTDLEYSQPTPIQAKAIPSVLAGSDLIAGANTGSGKTATFALPMLQKLFLEQ 74

Query: 67  ---DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDL 121
                 S  +    L + PTRELA QV   ++   A     +      GGVSV+ + + L
Sbjct: 75  GAKKTASKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +T L +    + V + + S++        R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVTQLTQKLLTNPVEIQVQSKDESTL--VQRVFTVNKGEKTTVLAHLIKE 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  + A++F + +         L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQALIFVNAKKDCEHLAGKLEKRGINAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ +I        + + +
Sbjct: 313 DIAARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDFHHFKIIEK 372

Query: 362 EANVSVVWEPA 372
           +  + +  E  
Sbjct: 373 KNKLRLEREEV 383


>gi|70726359|ref|YP_253273.1| hypothetical protein SH1358 [Staphylococcus haemolyticus JCSC1435]
 gi|68447083|dbj|BAE04667.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 448

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 100/401 (24%), Positives = 198/401 (49%), Gaps = 14/401 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + EA+ +  +   T +Q  I+    +  +++  +QTG+GK+ AF L L   
Sbjct: 6   FELFNLDSKLIEAIKDLKFDKPTEIQNRIIPRIKKGVNLIGQSQTGTGKSHAFLLPLIDK 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           +  EN        P ++ +APTRELA Q+ +    L     G+ V++ IGG  + ++R+ 
Sbjct: 66  IDVENKE------PQSIVVAPTRELAQQLYQAANHLATFKQGIKVSLFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             N   +V+GTP R+ D  +   L+      +++DEAD M+DLG  +D++ I     +  
Sbjct: 120 TSNQPQLVIGTPTRINDLAQSGHLHAHLASYLIVDEADLMIDLGLIEDVDLIASRLDENS 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y  +   V + S+++   +I++  +    +++ +  + ++ 
Sbjct: 180 HIAVFSATIPKSLQPFLNKYLSNPEYVEVDSKSQNKKNIEFYLIPTKGTEKVDKTLQLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC++R +       L     +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIVFCNSRDNADELANSLNAAGIKVGMIHGGLTPRERKQQMKRIRNLEFQFVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++  + +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHLITLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
            +     NV V       ++A   R  +R+ +D    + ++
Sbjct: 360 DKGYHFENVDVKNNELTPIKAHNTRR-KRVRKDDHLTNEVK 399


>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
          Length = 775

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 6/367 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + +RGY   T +Q   +   L  +DV+  A+TGSGKT  F + L   L A  
Sbjct: 43  LSFPVLKGILKRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKARQ 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL ++PTRELA+Q  + ++ L   TG   +V +GG S+  +   +     
Sbjct: 103 AKA----GARALILSPTRELALQTLKFIKELGRFTGFKASVILGGDSMDDQFNAIHGNPD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGR         L + +++ VV DEAD + ++GF + I+ I++  P+ R+ L+FS
Sbjct: 159 IIVATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPESRQTLLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   AK    D V + +  E++    +    +     ++      +        
Sbjct: 219 ATLPKILVDFAKAGLSDPVLLRLDVESKLPEGLSLSFITCRPEEKLAVLLSLLKRIIKPE 278

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              I+F  T   V    ++L +       +   L    R       + G+ RV I TDVA
Sbjct: 279 SQTIIFVETMHHVEYIHQILDKAGISNTFIYSNLDPSARKINAAKFQMGKVRVLIVTDVA 338

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L     
Sbjct: 339 ARGIDIPHLDFVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSSDEYPYLLDLHLFLG 398

Query: 365 VSVVWEP 371
             +   P
Sbjct: 399 RPLTIVP 405


>gi|322496663|emb|CBZ31732.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 544

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 6/338 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 135 MLEFSDLVAPDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPA 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 195 ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQ 253

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 254 QRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 313

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 314 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKME 373

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 374 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 433

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
            + +ATDVAARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 434 AILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIG 471


>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
 gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
          Length = 783

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/448 (24%), Positives = 192/448 (42%), Gaps = 17/448 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++G+   T +Q   +   +  KD++  ++TGSGKT AF + +   L    
Sbjct: 38  LDHTLFKGIQKKGFRQPTPIQRKAIPLIIDGKDIVAMSRTGSGKTAAFVIPILQKL---- 93

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +        AL I PTRELA+Q    ++ L   TG+  AV +GG  +  + + +     
Sbjct: 94  -KVRDMKGIRALIIEPTRELAIQTFIVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEKPD 152

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL   I      +S ++ +V DEAD + ++GF + +  +L   P+ R+ L+FS
Sbjct: 153 IVVATPGRLLHVIVEMDFRLSAVQIIVFDEADRLFEMGFAEQLHEVLKRIPENRQTLLFS 212

Query: 187 ATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           AT+  +I   +K        VR+++A +      + +              +      G 
Sbjct: 213 ATLPNSIIAFSKAGLSDPVLVRLDLAEKISDKLSMVFLYCRSDDKLAAFIHLAREVVAGN 272

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VFC+T   V     V  +     V L  +L    R+  +Q  R     + I TD+A
Sbjct: 273 EQTVVFCATMKHVEYLAAVAEKAGIDCVVLYSQLDCVARNINIQKFRKKECSLLIVTDIA 332

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L++ I+      P+  +HR GR  RAGR G ++ +   +       LF   +
Sbjct: 333 ARGVDIPLLDVAINYHFPPKPKLFVHRVGRVARAGRFGKAISLFGADEVPYVVDLFLFLS 392

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIH 424
             + +    S      +D   I   P  +   + D  K V     + D        L+  
Sbjct: 393 RPLKFATTDSA----NKDETLIGIFPDDIIDREVDFLKNVHDNSDELD------DLLKKS 442

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDSRA 452
              +   ++  P        R + + +A
Sbjct: 443 ENAMQKYKKTRPQPSAESVRRAKGEIKA 470


>gi|238062179|ref|ZP_04606888.1| RNA helicase [Micromonospora sp. ATCC 39149]
 gi|237883990|gb|EEP72818.1| RNA helicase [Micromonospora sp. ATCC 39149]
          Length = 707

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 150/570 (26%), Positives = 227/570 (39%), Gaps = 61/570 (10%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +PQ + +AL   G      +Q A +   L  +DVL   QTGSGKT+AFGL + +      
Sbjct: 109 LPQPLVQALGRLGIATPFPIQRATVPDALAGRDVLGRGQTGSGKTLAFGLPVIAR--LAK 166

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV   L  L    G+ +   +GGV   R+   L+ G  
Sbjct: 167 RARARPLHPRALVLVPTRELAMQVNDALVPLGKAVGIFLKTAVGGVPYDRQIDALRRGVE 226

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 227 IVVATPGRLGDLINRGVCHLDDVEVTVLDEADQMADMGFLPEVTELLAKTPAGSQRLLFS 286

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + +L K +  D V  + A      S +D+  +L+   D+    V       A  
Sbjct: 287 ATLDGDVDSLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDK--FAVTASIAARAGR 344

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAAR
Sbjct: 345 TMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRMSVLVATDVAAR 404

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+H +    P++ LHR+GRT RAG  G    ++    +R    +  +A V 
Sbjct: 405 GIHVDGVSLVLHVDPPKEPKDYLHRAGRTARAGESGAVATLVLPKQRRTTLAMLEKAGVE 464

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 P+   +R  D                                  A   L   R 
Sbjct: 465 ------PAETRVRAGDP---------------------------------ALAELTGARE 485

Query: 427 GLCAPEEITPVSLVSGRDRFRDDSR-AFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
               P      +     DR     R   +      D   G   +    G +     R   
Sbjct: 486 PSGVPVRDEAPAPRRHGDRPSAPRRFEDRGERRYGDRPTGERRY----GDRDG---RGER 538

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
               R +G  R          D    E   D  D        D+    +  G      R 
Sbjct: 539 GFGDRPAGERR--------YGDRPTGERRYDDRDGRGERGFGDRPAGERRYGDRPAGERR 590

Query: 546 Y--KSSGFKSKNSQDGATKRFKRFKGASKN 573
           Y  + +G +  + +    +RF    G  + 
Sbjct: 591 YDDRPAGERRYDDRPSGGRRFDERAGGERR 620


>gi|195377858|ref|XP_002047704.1| dead box protein 80 [Drosophila virilis]
 gi|194154862|gb|EDW70046.1| dead box protein 80 [Drosophila virilis]
          Length = 465

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 147/392 (37%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  ++   + + +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 77  VKTFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +            P  L ++PT ELA+Q G     +      +            
Sbjct: 137 AMLSRVNVA------LDHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEID 190

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               +     I                 +    +  +   +            I      
Sbjct: 191 RNSKITEHILIGTPGKMLDWGLKMRLFDMKKVRVFVLDEADVMIATQGHHDQCIRIHKML 250

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S + + +   +      +        +  +   +  E    +   Y         + NAI
Sbjct: 251 SSQCQMLFFSATYDKEVMDFARLIVSEPTIIRLMREEESLDNIKQYYVNCKNEDGKYNAI 310

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC TR + +     +      V  LSG+L+ ++R   L   R G+ 
Sbjct: 311 QNIYGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQE 370

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V +RGID+  + +V++ +L       ++ E  LHR GRTGR G+ G+++ +I 
Sbjct: 371 KVLITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLID 430

Query: 350 QNMQRRAER-LFREANVSVVWEPAPSVEAIRE 380
                   R + +     + +    + + I +
Sbjct: 431 GEKSMAVCRTIEKHFQKDITYLNTDNADDIEK 462


>gi|160897857|ref|YP_001563439.1| DEAD/DEAH box helicase domain-containing protein [Delftia
           acidovorans SPH-1]
 gi|160363441|gb|ABX35054.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
          Length = 438

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 183/385 (47%), Gaps = 18/385 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  +L + G V+ T +Q   + P L  +D+   A TGSGKT A+ L L    +   
Sbjct: 8   LSPALVSSLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLLQRWMDGG 67

Query: 67  DRFSP----ASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRD 120
                          L + PTRELA QVG  L  L         + V  GGVS++ +   
Sbjct: 68  KAQGAQGGFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVSINPQMMM 127

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+  A  +V TPGRL D +    + +S ++ +VLDEAD +LDLGF+D+++ +L   PK+R
Sbjct: 128 LRGSADFLVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVLALLPKQR 187

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT   A+ +LA     D V+  + +   Q +         A++        +LR
Sbjct: 188 QTLLFSATYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAVDRARRTQLLR 247

Query: 241 YHGA------------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
                           + A+VF +TR +     + L +      A  G+LSQ  R  AL 
Sbjct: 248 QLVQGDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAGIFATAFHGDLSQGARKEALA 307

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             +  R +V I TD+AARGID+  L LV++ +L  +  + +HR GRTGRAG  G ++  +
Sbjct: 308 DFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAGEDGTAISFV 367

Query: 349 PQNMQRRAERLFREANVSVVWEPAP 373
               Q     + +   + +  E  P
Sbjct: 368 TPADQAHWALICKRNQLDLELEQLP 392


>gi|297807157|ref|XP_002871462.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317299|gb|EFH47721.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 427

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 113 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRVLALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 407 RFEVDIKELP 416


>gi|302557418|ref|ZP_07309760.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302475036|gb|EFL38129.1| ATP-dependent RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 485

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/368 (33%), Positives = 191/368 (51%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P  +   L ++G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 56  VEAFADLGMPGQLLAELGKQGVTVPFPIQGATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 115

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +       R  P   PL L + PTRELA QV   L       G+ +A  +GGVS+ R+ 
Sbjct: 116 LAR--TAGQRAEPRR-PLGLVLVPTRELAQQVTDALTPYARSVGLRLATVVGGVSIGRQA 172

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L+ GA +VV TPGRL D I      ++H+   VLDEAD+M D+GF   +  +LD    
Sbjct: 173 GALRGGAEVVVATPGRLKDLIDRGDCGLNHVGVTVLDEADQMTDMGFMPQVTALLDQVRP 232

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           + + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 233 EGQRMLFSATLDRNVDRLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVQEADKHA--ATT 290

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V 
Sbjct: 291 EIAARDGRVIMFLDTKHAVDRLTRNLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVL 350

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + DL+LV++ +  ++ ++ LHR+GRT RAG  G  V ++  N +R   R
Sbjct: 351 VATNVAARGIHVDDLDLVVNVDPPTDHKDYLHRAGRTARAGESGSVVTLVTPNQRRGMIR 410

Query: 359 LFREANVS 366
           L  +A + 
Sbjct: 411 LMSDAGIR 418


>gi|290508239|ref|ZP_06547610.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
 gi|289777633|gb|EFD85630.1| ATP-dependent RNA helicase SrmB [Klebsiella sp. 1_1_55]
          Length = 443

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 116/382 (30%), Positives = 184/382 (48%), Gaps = 8/382 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAI 193
             +I+ +  +   ++ +VLDEAD MLD+GF  DIE I   +  +++ ++FSAT       
Sbjct: 138 LQYIKEENFDCRAVETLVLDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIK 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               +  ++        S   +     +      +  +   ++++L+   A  +IVF   
Sbjct: 198 DFAERLLEEPVEVSATPSTRERKKIHQWYYRADDIEHKTALLIHLLKQPEATRSIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD+
Sbjct: 258 RERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE----ANVSVVW 369
             V + ++    +  LHR GRTGRAG+KG+++ ++  +      ++ R         V+ 
Sbjct: 318 SHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLVEAHDHLLLGKIGRYVEEPLKARVID 377

Query: 370 EPAPSVEAIRERDAQRILQDPL 391
           E  P   A  E+   +  +  L
Sbjct: 378 ELRPKTRAPSEKLTGKPSKKVL 399


>gi|288553943|ref|YP_003425878.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
 gi|288545103|gb|ADC48986.1| ATP-dependent RNA helicase [Bacillus pseudofirmus OF4]
          Length = 385

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 170/370 (45%), Gaps = 9/370 (2%)

Query: 3   IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE   +P +  EALS+ G    T +Q  ++   L+ + ++  +QTG+GKT+AF L   +
Sbjct: 4   TFEIDGLPSMYQEALSKMGVSEPTDIQAKMIPEALQGQSIIARSQTGTGKTLAFLLPALA 63

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERR 119
            +       S       L +APT+ELA+Q+      L  +  + + +   G     +  R
Sbjct: 64  KIN------SKEKGLQVLILAPTQELAMQIVEVARELTKEAPIEIGSFIGGANVKRQLER 117

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
             +    + VGTPGR+ + +  K L +  LK V +DEAD ML      D    +     +
Sbjct: 118 LKKKKPQLAVGTPGRVLELVDMKKLKLHELKVVAVDEADRMLGEKSSWDAFTEIAKRAGR 177

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            R  +F +   P                  A        I++  + V   +R +    ++
Sbjct: 178 DRQFLFVSATLPDDFADMIASFAPFTVEMEAEGGLLVDHIEHLLIRVEARERVDMARKLI 237

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                +  IVF +    ++  T+ L     +  +LS + ++QER  AL   R G   + +
Sbjct: 238 HAEKIEKGIVFVNQLEKLAETTEKLVYRKIKAASLSSDSTKQEREKALNQFRKGDIHILV 297

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+D+ D+  +I  +  ++P++ LHR+GRTGR G++G  V  I +  + + E+ 
Sbjct: 298 ATDIAARGLDVDDVTHIIQLDPPASPDSYLHRAGRTGRMGKEGKVVTFIERKDEYKVEKY 357

Query: 360 FREANVSVVW 369
            RE  + +  
Sbjct: 358 KRELGIELDE 367


>gi|37677247|ref|NP_937643.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
 gi|37201792|dbj|BAC97613.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 436

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 195/411 (47%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 31  SLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLRVN 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA QV   +  +    G+      GGV   ++ + L    
Sbjct: 90  PEQ-------KALILVPTRELATQVSEAINQVGQALGLNAVCLCGGVDKEQQLQALATNP 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I   +  +R+  MF
Sbjct: 143 HILVATTGRLVDLANNGL-DLSNIHYLVLDEADRLLDMGFWPDVQNIAAQTSSQRQTAMF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK   +   +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 202 SATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWT 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF   + +     K L +      AL G+ SQ ER  AL   + G+ +V IATD+ A
Sbjct: 262 QALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FR 361
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++          +     R
Sbjct: 322 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAIRHLTQR 381

Query: 362 EA------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           E          V  +P+   S  A R++ A R  Q+   +   Q   K+  
Sbjct: 382 ELPVQDLEGFPVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRPA 432


>gi|149370359|ref|ZP_01890048.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
 gi|149355910|gb|EDM44467.1| inducible ATP-independent RNA helicase [unidentified eubacterium
           SCB49]
          Length = 445

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 206/449 (45%), Gaps = 17/449 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKTVAFGLAL 58
             F+++     + + L     +  T +Q  I+   L +KD V+  A+TG+GKT AFGL L
Sbjct: 3   NTFKSLGVDSFLVKGLKTLDILAPTDIQTKIIPVVLNQKDDVVGIAKTGTGKTAAFGLPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRE 117
              +   N+         A+ +APTREL  Q+ + L         + +A   GGV +  +
Sbjct: 63  LQQIDVNNNDI------QAIVLAPTRELGQQIYKNLSDFAKFKPEISIASTCGGVPIKPQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L++  HIVV TPGRL D +  K + IS+   +V+DEADEM+ +      + +     
Sbjct: 117 IERLKDPTHIVVATPGRLIDLLERKAVAISNASYLVIDEADEMVTILKEGLDKIVKGLPK 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K+R  L  +         +     K    + +      H  ID++ V+V   ++ + +++
Sbjct: 177 KRRTFLFTATLSGEIKQLVQNYLSKKVSHIEVDMATLGHQGIDHQYVVVNPEEKLDVLMH 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  I+FC T+A+V++  K LA H F   A+ G LSQ  R   +   R G   +
Sbjct: 237 FLSSKEGQRGIIFCKTKAAVNKLAKKLAIHKFSSGAIHGSLSQPIRDRIMDQFRAGHINI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARGID+ ++  V+   L    +  +HRSGRT RAG KG+S+ VI Q   +   
Sbjct: 297 LIATDLAARGIDVKEISYVVQYHLPDTFDAYVHRSGRTARAGAKGLSLSVIQQEEVQDMP 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQ-------RILQDPLFLDSIQGDEKKMVDVLLAK 410
            L  E  ++    P     +I E +A+       +   +    ++ + D K +   L   
Sbjct: 357 ELEDELGITFSEMPKADALSIEENNAKLWAKQIFKTKPNRFISEAFKTDIKTIFHHLTKD 416

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSL 439
              +K+ A  L   +  +     +    L
Sbjct: 417 ELVDKLLAHHLNQSKNTMAKEVSVKKRKL 445


>gi|8953379|emb|CAB96652.1| DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana]
          Length = 435

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 113 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  ++   + ++L   
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 407 RFEVDIKELP 416


>gi|116193535|ref|XP_001222580.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
 gi|118577976|sp|Q2H4D0|SUB2_CHAGB RecName: Full=ATP-dependent RNA helicase SUB2
 gi|88182398|gb|EAQ89866.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
          Length = 434

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 180/378 (47%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   D++  A++G GKT  F L     +    
Sbjct: 57  LKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVA 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++ +
Sbjct: 117 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKE 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L + +++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 171 THPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT++  I  + + + ++     +  + +       +  +     +++  +  +L 
Sbjct: 231 VMMFSATLADEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 291 ELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+++  +  +  +   +++
Sbjct: 351 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 411 EKRFEVALPEFPKEGIDA 428


>gi|3646126|emb|CAA09374.1| ATP-dependent RNA helicase [Homo sapiens]
          Length = 420

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 148/366 (40%), Gaps = 16/366 (4%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           + + G+   T +Q   +   L  +++L SA TGSGKT+AF + +   L    ++      
Sbjct: 1   ILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANK-----G 55

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
             AL I+PTRELA Q+ REL  +   TG  + +        ++     +    ++ T   
Sbjct: 56  FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 115

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD-------SSPKKRRMLMFSA 187
              ++  +      L +V     DE   L       F           +  K R  MFSA
Sbjct: 116 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSA 175

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILRYHGAKN 246
            +   + + A +    +      + N     ++   + V     +  A+  +++      
Sbjct: 176 ILHMMLNSGANSTWTMSSVCPFGARNSAVETVEQELLFVGSETGKLLAVRELVKKGFNPP 235

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF  +          L      V  +  E +QQ+R N +   R G+  V I T + AR
Sbjct: 236 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 295

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFREA 363
           GID   + LVI+ +  ++    +HR GRTGRAG KG ++    ++ +   R    + ++A
Sbjct: 296 GIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQA 355

Query: 364 NVSVVW 369
              V  
Sbjct: 356 GCPVPE 361


>gi|323453625|gb|EGB09496.1| hypothetical protein AURANDRAFT_10388 [Aureococcus anophagefferens]
          Length = 589

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 28/394 (7%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STL 62
           ++ + +  A+ + GY   + +Q   +   L  +D++  A+TGSGKT AF + +    S L
Sbjct: 182 DLGEPLLMAIRDAGYKEPSPIQRQAIPVGLELRDIIGVAETGSGKTAAFCIPMIRYISKL 241

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            A          PLAL +APTRELA Q+  E + L A   + V   +GG+S+  +   L+
Sbjct: 242 PAARIASLADDGPLALVMAPTRELATQIAGECKKLTAHMDMNVTTVVGGMSIEDQAFVLR 301

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------ 176
            G  I+VGTPGR+ D +  + L ++    VVLDEAD M+D+GF   +  IL+        
Sbjct: 302 EGVEIIVGTPGRIQDCLDTQYLVLNQANYVVLDEADRMIDMGFEPQVHSILEEMGGLLLS 361

Query: 177 ------------------PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                               +   +  +   S       K  +  A+      ++ ++  
Sbjct: 362 EDDIEMEQQRLAVQRGEACYRITAMFSATMPSAVEKLAKKFLRHPAIVCIGDEDSGKNKR 421

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNA-IVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           I    + +A + + NA+V+ILR   A++  +VFC+ +       KVL+    +   L G 
Sbjct: 422 IAQHVLYIAEAAKKNAVVDILRKKKAQDKYLVFCNEKKGCDALAKVLSTAGLRSSVLHGG 481

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q+ R   L   + G   V +ATDVA RG+D+PD+  V++ ++    EN  HR GRTGR
Sbjct: 482 KTQEHRDATLAAYKAGSVTVLVATDVAGRGLDIPDVAHVVNYDMPLKIENYSHRIGRTGR 541

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
           AG+ G++  ++  + +     L +    +    P
Sbjct: 542 AGKDGVATTLLTDSDEAMMYDLRQYLEQTDAQIP 575


>gi|298712936|emb|CBJ26838.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 694

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/420 (28%), Positives = 188/420 (44%), Gaps = 21/420 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I +     L  RG   L  +Q        R KD++  A+TG GKT+AF + +   LL  
Sbjct: 153 DISETTKGHLRNRGITTLFPIQAQTFEHIRRGKDLIGRARTGMGKTLAFAVPVIEKLLMA 212

Query: 66  N-DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                 P   P  L +APTRELA QV  + E       +      GG     +   L+ G
Sbjct: 213 GAGSLKPGRKPRVLVMAPTRELAKQVAADFELTA--PSLKTTCIYGGAPYRPQEDALRWG 270

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             +VVGTPGRL DH+    L +S  + ++LDEAD+MLD+GF++++E + ++  ++     
Sbjct: 271 VDVVVGTPGRLLDHVGRGTLQLSDAEFIILDEADQMLDMGFKEEMEKVFEACGEEGEQGR 330

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN----------RQHSDIDYRAVLVALSDRDNA 234
                S  +        K+ ++ +    +          +    I       + S   N 
Sbjct: 331 QMLLFSATMPPWVDKVVKEYMKEDRVFIDLVKEGTVKASKDVEHIGIPCHWTSRSSTIND 390

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           IV++    G K  IVFC+T+   +              AL G+++Q  R + L   + G 
Sbjct: 391 IVSVYGAGGNKRTIVFCTTKRDCNELCMDPKMTYDCQ-ALHGDITQANRESTLAGFKKGS 449

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSS------NPENLLHRSGRTGRAGRKGMSVFVI 348
            +V +ATDVAARG+D+  ++LV++AE  +      + E+ +HRSGRTGRAGRKGM + + 
Sbjct: 450 FKVLVATDVAARGLDMI-VDLVLNAEPPTHQSGRVDTESYVHRSGRTGRAGRKGMCITLY 508

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLL 408
               +     + R       W  AP  + I    A   + D   +D    D  K     L
Sbjct: 509 TPRQRGGLGEIERHIGNDFAWRGAPQPDDIVNASAGAAIDDIRAVDDSVIDLYKTAAEQL 568


>gi|118463537|ref|YP_882142.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
 gi|118164824|gb|ABK65721.1| ATP-dependent RNA helicase [Mycobacterium avium 104]
          Length = 455

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 6/371 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++  P  I +AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L 
Sbjct: 5   KTFADLGVPARIVDALTARGITSPFPIQAETLPDTLAGRDVLGRGKTGSGKTLAFSIPLV 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L   N R +    P  L +APTRELA Q+   LE L A  G+ V+   GGVS HR+  
Sbjct: 65  GRLSTGNRRPAR---PTGLVLAPTRELATQITATLEPLAAACGLRVSTIFGGVSQHRQVT 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+ G  IVV  PGRL D +R + + +  ++  V+DEAD M DLGF   +  IL ++P  
Sbjct: 122 ALKAGVDIVVACPGRLEDLMRQRLITLEAVRVTVIDEADHMADLGFLPGVTRILAATPND 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L   + +DAV  ++   N   S++ +       S +    +   
Sbjct: 182 GQRLLFSATLDNGVDKLVTRFLRDAVLHSVDEANSPVSEMTHHV-FHVDSAQAKKELVHR 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              G    I+F  T+    +  + L E     V L G LSQ  R   L M   G ARV +
Sbjct: 241 LASGTGRRILFLRTKHQARKLARQLTESGVPSVDLHGNLSQPARERNLAMFAAGSARVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    +     L
Sbjct: 301 ATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQREHTRAL 360

Query: 360 FREANVSVVWE 370
            R+A + V  +
Sbjct: 361 MRKAGIDVAPQ 371


>gi|291483194|dbj|BAI84269.1| hypothetical protein BSNT_01265 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 376

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 101/359 (28%), Positives = 193/359 (53%), Gaps = 8/359 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E  S  G+   T VQE      +  KDV+  + TG+GKT+A+ L +   +  E     
Sbjct: 15  IQENWSASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQ---- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+   HI+VG
Sbjct: 71  --KHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ K L +  +K +VLDEAD+++    R+ I+ I+ ++ + R++L FSAT+ 
Sbjct: 129 TPGRVFELIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDRQLLCFSATLK 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                + +   ++   + +     +   + ++ ++    D+   ++  L       A+VF
Sbjct: 189 KETEDVLRELAQEPEVLKVQRSKVEAGKVKHQYLICDQRDK-VKLLQKLSRLEGMQALVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
                ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD+AARG+D+
Sbjct: 248 VRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIAAFEDGEFPLLLATDIAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
            +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++  V +  
Sbjct: 308 ENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVELSE 365


>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
 gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
          Length = 501

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 113/424 (26%), Positives = 202/424 (47%), Gaps = 17/424 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE++     +  +  +  + N +++Q   +   +  +D++ SA+TGSGKT +F + + 
Sbjct: 5   KFFESLGLAPWLIRSCKQLNFKNPSNIQYNTIPEIINGRDIIASAKTGSGKTASFAIPIL 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L  +           A+ + PTRELAVQ+  +   + A   V V+  IGG+   ++  
Sbjct: 65  NLLSEDP------YGVFAVVLTPTRELAVQIAEQFSAIGAPMNVQVSTVIGGIDTVKQAL 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISH-LKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HI+V TPGRL  H+           K +VLDEAD +L   F  +I  IL+  P 
Sbjct: 119 ILDKRPHIIVATPGRLASHLTNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEYLPP 178

Query: 179 KRRMLM--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
             +     FSAT++  +  L              S+      +    + +    +D  +V
Sbjct: 179 PTQRQTLLFSATMTNNLKKLESISLNSPFIFEDNSKYDTVDTLKQEYIYMPAQAKDCYLV 238

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L+ H  ++ IVF +   SV     +L +     V+L   L Q+ R +AL++ + G+ +
Sbjct: 239 YLLKKHIGQSVIVFINNCYSVEAVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVK 298

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IATDVA+RG+D+PD+E+VI+ +LS++ ++ +HR GRT R G+ G ++  I  +  +  
Sbjct: 299 VLIATDVASRGLDIPDVEMVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHDVQLI 358

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD----AQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           + +       +        E  R       A++I++  + LD I+   K+          
Sbjct: 359 KNIELVIKKELELYKTDDDEVFRHLKESSTARKIVE--VHLDEIEFGVKQKERRAERNEL 416

Query: 413 PEKI 416
            ++I
Sbjct: 417 QKQI 420


>gi|260583734|ref|ZP_05851482.1| helicase [Granulicatella elegans ATCC 700633]
 gi|260158360|gb|EEW93428.1| helicase [Granulicatella elegans ATCC 700633]
          Length = 406

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 9/352 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           + I    +E+G+ +LT +QEA        +DV+  + TG+GKT+A+ L L   +   ++ 
Sbjct: 3   EYIQNKWNEKGFKDLTPIQEATKELIQNGEDVVAVSPTGTGKTLAYLLPLLEKIEINHE- 61

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   A+ + P++ELA Q+G  +        + + V  GG +V R+  +L+    +V
Sbjct: 62  ------LQAVILVPSQELAQQIGEVIREW-KLPELTMLVLAGGANVKRQIENLKKKPELV 114

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           VGTPGRL +    + L +  ++ +VLDEAD +L     +     +   P +R+M+ FSAT
Sbjct: 115 VGTPGRLTELANQRKLKLHQVQTLVLDEADYLLAQEHLEQTRSFIKKCPSQRQMICFSAT 174

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
            +  + ++ +       +     +    +       + +   + N ++          A+
Sbjct: 175 KNEILESIHQWI-NMTPKWVENEKKMSGNGNVKHVYIESPVRKKNELLRKFANMKEYQAL 233

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF ++ A+     + L  H      L+ + +Q  R  A+Q  + G   + + TDVAARG+
Sbjct: 234 VFVNSLANAGILAEKLQYHNIPCALLTSQENQINRKAAIQAFKKGEVPILLTTDVAARGL 293

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           D+ DL +VIH +L  N E   HRSGRTGR G+ G+ +  + +   R  ++L 
Sbjct: 294 DIEDLPVVIHYDLPENKEVYTHRSGRTGRMGKDGLVISFVTEKEVRDLKKLI 345


>gi|113931550|ref|NP_001039224.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus (Silurana)
           tropicalis]
 gi|89272468|emb|CAJ82454.1| novel GUCT (NUC152) domain containing DEAD/DEAH box helicase
           [Xenopus (Silurana) tropicalis]
          Length = 755

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 174/419 (41%), Gaps = 17/419 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  +   + L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   
Sbjct: 181 FSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVER 240

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    +   AP  + + PTRELA+Q+  E+  +  K    V    GG    ++   +
Sbjct: 241 LNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKL--KVCCFYGGTPYQQQVFSI 298

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G   +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K   
Sbjct: 299 KEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDP 358

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------- 234
                  +  A                   +         +A +                
Sbjct: 359 EENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAA 418

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +       +I+FC ++                   L G+L Q+ER   L+  R
Sbjct: 419 VLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFR 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +AT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +    
Sbjct: 479 QGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPR 538

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +     + R   ++      PS+  + +  +   ++    LDS+  D  +       +
Sbjct: 539 ERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKS---LDSVPADVIEHFKEYAQE 594


>gi|311067228|ref|YP_003972151.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
 gi|310867745|gb|ADP31220.1| putative ATP-dependent RNA helicase [Bacillus atrophaeus 1942]
          Length = 376

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 191/368 (51%), Gaps = 14/368 (3%)

Query: 2   KIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           K F      I E     G+   T+VQE      +  KDV+  + TG+GKT+A+ L +   
Sbjct: 12  KTF------IKENWETSGFTKPTAVQEQTAELIMEGKDVIAESPTGTGKTLAYALPVLER 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  E           A+ +AP+REL +Q+ + ++   + + +  A  IGG +V ++   L
Sbjct: 66  IQPEQKHA------QAVILAPSRELVMQIFQVIQDWKSGSELRAASIIGGANVKKQVEKL 119

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HI+VGTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ K R+
Sbjct: 120 KKHPHIIVGTPGRVSELIKMKKLKMHEVKTIVLDEADQLILPEHRETMKQIIKTTLKDRQ 179

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +L FSAT+      + +   ++   + +         + ++ ++    D+   ++  L  
Sbjct: 180 LLCFSATLKQETEQVLREMTQEPEVLKVERSQHDAGKVKHQYLVCDQRDK-VKLLQKLSR 238

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF     ++S + + LA H   +  L  E  + ER+  L    +G   + +AT
Sbjct: 239 LQGMQALVFVRDIGNLSVYAEKLAYHHVDLGILHSEAKKMERAKILAAFENGEFPLLLAT 298

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+ +L  VIHA++  + +  +HRSGRTGRAG++G  + ++    + + +++ +
Sbjct: 299 DIAARGLDIENLPYVIHADIP-DEDGYIHRSGRTGRAGKEGTVISLVTPMEESKLKKMAK 357

Query: 362 EANVSVVW 369
              +++  
Sbjct: 358 RLGLTLQQ 365


>gi|163916596|gb|AAI57756.1| LOC734085 protein [Xenopus (Silurana) tropicalis]
          Length = 758

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/419 (24%), Positives = 174/419 (41%), Gaps = 17/419 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  +   + L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   
Sbjct: 181 FSKFPISKDTIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVER 240

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    +   AP  + + PTRELA+Q+  E+  +  K    V    GG    ++   +
Sbjct: 241 LNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKKL--KVCCFYGGTPYQQQVFSI 298

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G   +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K   
Sbjct: 299 KEGFDFLVGTPGRVRDLVQNYRLDLTVLKHVVLDEVDMMFDMGFSEQVEEILSVRYKPDP 358

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA------- 234
                  +  A                   +         +A +                
Sbjct: 359 EENPQTLLFSATCPDWMYNVAKKYMKKQFEKIDLVGHRSQKAAITVEHLAIECTRSQKAA 418

Query: 235 ---IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +       +I+FC ++                   L G+L Q+ER   L+  R
Sbjct: 419 VLGDIVQVYSGSHGKSIIFCDSKLEAHELATNCGSLKQSAKPLHGDLQQKEREVILKGFR 478

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V +AT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +    
Sbjct: 479 QGSFEVLVATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGICISLYEPR 538

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +     + R   ++      PS+  + +  +   ++    LDS+  D  +       +
Sbjct: 539 ERHYLRNVERSTGITFKRVGIPSLLNVAKSSSADAIKS---LDSVPADVIEHFKEYAQE 594


>gi|156540308|ref|XP_001599155.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 488

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 150/392 (38%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  N+   + + + + G+   + +QE  L   L    ++++  +Q+G+GKT AF L
Sbjct: 100 VKTFEALNLKPELLKGIYQMGFNAPSKIQETALPTLLANPPQNMIAQSQSGTGKTAAFVL 159

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +            P  L ++PT ELAVQ G     +      +            
Sbjct: 160 AMLSRVDTSKP------YPQVLCLSPTYELAVQTGEVAAKMAKFCPDIKMKFALKGETLA 213

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               ++    I                         +   +            I      
Sbjct: 214 RGTRIEEHVLIGTPGKIMDWSIKFKFFDIKKITAFVLDEADIMIATQGHQDQCIRIHKML 273

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           SP  + M   +   +  +       +   +      E    +   Y      + ++  AI
Sbjct: 274 SPSCQMMFFSATYDTEVMEFAELIVKNATIIRLQKEEESLENIKQYYVKCGNIEEKYQAI 333

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC T+ +    +  + +    V  LSG+L+ ++R + L   R+G  
Sbjct: 334 TNIYGVITIGQAIIFCQTKKTACWLSDKMTQDGHSVAILSGDLTVEDRISVLDRFREGLE 393

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V ARGID+  + +V++ +L       ++ E  LHR GRTGR G  G+++ ++ 
Sbjct: 394 KVLITTNVLARGIDVEQVTIVVNFDLPVDQNQQADYETYLHRIGRTGRFGNSGVAINLVD 453

Query: 350 QNMQRRA-ERLFREANVSVVWEPAPSVEAIRE 380
                +  + + R    ++    A   +AI +
Sbjct: 454 STRSMQICQDIERHFKRTIYHLDAEDPDAIEK 485


>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 422

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 180/371 (48%), Gaps = 8/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           IP++I   LS+  Y   T +Q   +   L   D++  A TGSGKT  F L +      E 
Sbjct: 16  IPELIAR-LSDLEYTQPTPIQAQAIPSILTGSDLIAGANTGSGKTATFALPMLQKAFLEL 74

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRDL 121
                 S  +    L + PTRELA QV   ++   A     +      GGVSV+ + + L
Sbjct: 75  GAKSTTSKGNFVTGLILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQAL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA I+V TPGRL D I    + +  +  +VLDEAD ML LGF +++  +L   P K++
Sbjct: 135 RGGADIIVATPGRLLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLALMPAKKQ 194

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT    +  L +    D V + +   N+  S +  R   V   ++   + ++++ 
Sbjct: 195 TMLFSATFPEQVKLLTQELLNDPVEIQVQ--NKDESTLVQRVFTVNKGEKTTVLAHLIKT 252

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           H  +  ++F + +         L +         G+  Q ER+  ++  + G   V IAT
Sbjct: 253 HKWRQVLIFVNAKKDCEHLAAKLEKRGVNAQVFHGDKGQSERTRVIEKFKAGEIEVLIAT 312

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARG+D+  L +VI+  L  +P + +HR GR+GRAG  G+++ ++        + + +
Sbjct: 313 DIAARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLVDYEDFHHFKVIEK 372

Query: 362 EANVSVVWEPA 372
           +  + +  E  
Sbjct: 373 KNKLRLEREEV 383


>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
 gi|160380649|sp|A6RUH2|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
 gi|150846532|gb|EDN21725.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
          Length = 801

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 181/371 (48%), Gaps = 9/371 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F++  + + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 268 TTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVL 327

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELA+Q       L + T +   + +GG+S+  +  
Sbjct: 328 ERLLYRPKKVPTSR---VAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEA 384

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 385 ELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPK 444

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAI 235
            R+ ++FSAT+S ++  L +      VR+ + S+      +    + +       R   +
Sbjct: 445 SRQTMLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYL 504

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +         IVF   +    R   +      +   L G +SQ++R  +++  RDG+A
Sbjct: 505 LYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKA 564

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  ++ VI+ E   + +  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 565 SFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKV 624

Query: 356 AERLFREANVS 366
            +   + +   
Sbjct: 625 VKAAVKASRTQ 635


>gi|299890798|ref|NP_001177749.1| probable ATP-dependent RNA helicase DDX59 isoform 1 [Rattus
           norvegicus]
 gi|149058502|gb|EDM09659.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Rattus norvegicus]
          Length = 619

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 106/405 (26%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ + + L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIIR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E+        P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALPED------KTPSALILTPTRELAIQIERQAKELMRGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +V+ TPGRL D I    +++S +K VV+DEAD ML +GF+  +  +L+ +P   
Sbjct: 319 LQQHVKVVIATPGRLLDIIEQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPSDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   S +          A   +   I+N
Sbjct: 379 QTVLVSATIPDSIDQLADQLLHNPVRIVTGDKNLPCSSVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V         ++  E SQ ER   L+ + +G   V
Sbjct: 439 DQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T +  RG+DL +++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 499 VVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFW 558

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   +  + +++K
Sbjct: 559 DVAKRVKPTGSILPP------------QLLNSPYLHEQKRKEQQK 591


>gi|6014919|sp|O61305|DDX19_DROME RecName: Full=DEAD-box helicase Dbp80
 gi|3108197|gb|AAC23709.1| DEAD-box helicase [Drosophila melanogaster]
          Length = 460

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 149/392 (38%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  ++   + + +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 72  VKTFEALHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 131

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +          + P  L ++PT ELA+Q G     +      +            
Sbjct: 132 AMLSRVNV------CLNHPQVLCLSPTYELAIQTGEVAARMGQFCREIKLRFAVRGEEVD 185

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             + ++    I                 +    +  +   +            I      
Sbjct: 186 RSKKIEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKML 245

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           +P  + +   +      +           +   +  E    +   Y         + NAI
Sbjct: 246 NPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKYNAI 305

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC T+ + +     +      V  L+G+L+  +R + L   R G  
Sbjct: 306 QNIYGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLE 365

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T++ +RGID+  L++V++ +L       ++ E  LHR GRTGR G+ G+++ +I 
Sbjct: 366 KVLITTNILSRGIDIEQLQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLIT 425

Query: 350 QNMQRRA-ERLFREANVSVVWEPAPSVEAIRE 380
                +    + +  N  +      S + I +
Sbjct: 426 DEKTMKVCSDIEKHFNKKIEVLNTDSADDIEK 457


>gi|241253045|ref|XP_002403786.1| RNA helicase, putative [Ixodes scapularis]
 gi|215496560|gb|EEC06200.1| RNA helicase, putative [Ixodes scapularis]
          Length = 463

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/391 (26%), Positives = 177/391 (45%), Gaps = 11/391 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ + +AL+E  +   T +Q   L   +R+  DV+ +A+TGSGKT+AFG+ +   +  +
Sbjct: 68  VPEPVLKALAELNFTQPTPIQAQTLPSAIRDHMDVMGAAETGSGKTLAFGIPILHHIAEQ 127

Query: 66  NDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
             R      +  AL + PTRELA+QV + L+     TG+ V   IGG+S  ++ R L+  
Sbjct: 128 KARIGDGPMSLQALVLTPTRELAIQVKQHLQSAAKYTGIGVVNVIGGLSADKQLRLLKRR 187

Query: 125 AHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             IVV TPGRL + +        ++S+++ +V+DEAD M++ G  +D+  +L      R 
Sbjct: 188 PEIVVATPGRLWELVDQNTPHLSDVSNVRYLVIDEADRMVEKGHFEDLTRLLALMNADRV 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI------DYRAVLVALSDRDNAI 235
                        TL     +                +          ++ +  +  ++ 
Sbjct: 248 DGAKRRQNFVFSATLTMQLMRIIGVSAKPKVVDLTRKLGTAESLRESRIVCSSIEDKDSR 307

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           +           +VFC++  SV R   VL       + L  ++ Q++R   L   R    
Sbjct: 308 LYYFLLAHPGRTLVFCNSIDSVRRLVSVLDLLQCSPLPLHAQMQQRQRLKNLDRFRSSPT 367

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            + +ATDVAARG+D+  +E VIH ++    E  +HRSGRT RA   G+SV ++       
Sbjct: 368 GLLLATDVAARGLDIEGIEHVIHFQVPRTAEVYVHRSGRTARAASDGLSVMLMEPRELPV 427

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             ++ R           P    + +    R+
Sbjct: 428 YRKICRTLGREEDLPDFPVDSDVLKAVLDRV 458


>gi|329769825|ref|ZP_08261226.1| hypothetical protein HMPREF0433_00990 [Gemella sanguinis M325]
 gi|328838187|gb|EGF87805.1| hypothetical protein HMPREF0433_00990 [Gemella sanguinis M325]
          Length = 443

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 107/459 (23%), Positives = 208/459 (45%), Gaps = 23/459 (5%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FE     + +  A+ + G+ N T +QE + +P L+ K+++  +QTGSGK+ +F L + 
Sbjct: 4   KSFEQYKFNEFVNNAIVDLGFSNPTKIQERVFSPVLKGKNIVAKSQTGSGKSHSFLLPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
           S L     +        ++ +APTREL+ Q+      +   +   + + +CIGG  ++R+
Sbjct: 64  SKLDLSKKK------TQSIILAPTRELSRQLYDMALQIAEFSEEDIKITLCIGGQDLNRD 117

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              + N  H+++GTP R+ +  R   L+I  ++++V+DE D M+DLGF +D++ I   + 
Sbjct: 118 IERVSNAPHLIIGTPTRVLELDRASALSIKEVESLVIDECDMMIDLGFMEDVDKISKRAA 177

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +  + L+FSATI           +       I  +N +   I+Y  +    S R   +  
Sbjct: 178 ENCQFLVFSATIP--TQMSHFLKKYLKNAQYIEIDNAKFGKIEYILIPEKSSTRLEKLYE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           I        A++F + +  V   ++ L      V  L G+L+ +ER    + + +     
Sbjct: 236 ITTVINPYLALIFANKKTEVEEISRYLISQGLNVGVLHGDLTPRERKQMQRRINNLDFTY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +A+D+ +RGID+  +  VI+  + ++ +  +HR+GRTGRAG  G  + +     + + +
Sbjct: 296 VVASDLMSRGIDIEGVSHVINFNIPNDLDFFVHRAGRTGRAGLSGDCITIYNNKDEEKLQ 355

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIA 417
            L     +    +   + E I  +D  +           Q  +K + D  L +    K+ 
Sbjct: 356 ALESR-GIEFNHQDIRNGEFIEVKDRNKR----------QSRKKVVADHNLTEKLKSKVR 404

Query: 418 AGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
                          ++  +     R   +  +RA +  
Sbjct: 405 VSKKVKPGYKKKYKYKMDKLKQKERRKFAKRTNRANRGK 443


>gi|294630176|ref|ZP_06708736.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292833509|gb|EFF91858.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 510

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/365 (32%), Positives = 190/365 (52%), Gaps = 7/365 (1%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   +
Sbjct: 93  TFADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLA 152

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L       +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 153 RL---AGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYA 209

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  ++V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   
Sbjct: 210 LERGVDVLVATPGRLRDIINRGACSLENVEVAVLDEADQMSDLGFLPEVTELLDQIPAGG 269

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + ++FSAT+   I+TL K Y  D V   + S     + + +  ++V    +D A V    
Sbjct: 270 QRMLFSATMENEISTLVKRYLSDPVTHEVDSAQGNVTTMSHHILIV--KPKDKAPVTAAI 327

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 328 ASRKGRTIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNVLVA 387

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHR+GRT RAGR G  V +   + +R+  RL 
Sbjct: 388 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLM 447

Query: 361 REANV 365
            +A V
Sbjct: 448 EDAGV 452


>gi|297833736|ref|XP_002884750.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330590|gb|EFH61009.1| hypothetical protein ARALYDRAFT_478294 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 539

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 152/367 (41%), Gaps = 15/367 (4%)

Query: 1   MKIFENIPQ------VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           +K F  +         I   L+E G+   T +Q   +   L  ++    A TGSGKTVAF
Sbjct: 134 LKSFAELSSRYGCEGYILGNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTVAF 193

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              +   L     +        A+ ++P RELA Q  RE + L   +   + +    +  
Sbjct: 194 ICPMLIKL-----KHPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVK 248

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
             +   L+    I      +    I+ K +++S ++ +VLDE+D++ +      I+ ++ 
Sbjct: 249 TADFSKLRCDVLISTPMRLKRA--IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 306

Query: 175 -SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRD 232
             S       +FSAT+  ++  LA++   DAVRV I  +N     +  +         + 
Sbjct: 307 ACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGTEEGKL 366

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+            ++F  ++         L     +   +  +L   ER NA+   R 
Sbjct: 367 LALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRA 426

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G   V IATDV ARG+D   +  VI+ +   +    +HR GR+GRAGR G ++    +  
Sbjct: 427 GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 486

Query: 353 QRRAERL 359
                 +
Sbjct: 487 VPFLRNI 493


>gi|67900874|ref|XP_680693.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
 gi|74656963|sp|Q5AWA6|DBP3_EMENI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|40742814|gb|EAA62004.1| hypothetical protein AN7424.2 [Aspergillus nidulans FGSC A4]
          Length = 498

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 13/375 (3%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G+ + T++Q A        +DV+  A+TGSGKT+AFGL     +L    +   +  PLA+
Sbjct: 92  GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTK-QKSCRPLAV 150

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            I+PTRELA+Q+  +L     K   +   CI G     E+R+    A +VV TPGRL D 
Sbjct: 151 VISPTRELAMQIYDQLVKFAEKVD-IQVACIFGGVKKDEQREALKSAAVVVATPGRLKDL 209

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
                L++  +K +VLDEAD MLD GF  DI+ I+   P  +R  +      P I     
Sbjct: 210 QNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLA 269

Query: 199 NYQKDAVRVN--------IASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
           +    +                N +   +           R   I+N  +       + F
Sbjct: 270 STFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAF 329

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
           C  +    R  ++L    F+V  + G+LSQQER  +L+  + G A V +ATDVAARG+D+
Sbjct: 330 CLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDI 389

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSV 367
           P ++LV++       E+ +HR GRTGRAG  G ++ +  +  + ++  L    + AN  V
Sbjct: 390 PHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEV 449

Query: 368 VWEPAPSVEAIRERD 382
                     ++++ 
Sbjct: 450 PEALLKFGSTVKKKQ 464


>gi|262201425|ref|YP_003272633.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247]
 gi|262084772|gb|ACY20740.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 491

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/388 (33%), Positives = 194/388 (50%), Gaps = 6/388 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  FE++  P  + + L+  G      +Q+  L   L  KDVL   +TGSGKT+AF + L
Sbjct: 1   MTTFESLGVPAELVKVLAAEGKTEAFPIQQDTLGDTLEGKDVLGRGKTGSGKTLAFSIPL 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + L        P  AP  L +APTRELA Q+ R +E L    G+ V    GGV   R+ 
Sbjct: 61  VAGLAEMEVPRKPG-APTGLVLAPTRELATQIARVVEPLAEAVGLRVTTVFGGVKQTRQE 119

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +  + G  IVV  PGRL D +R   + +  ++  V+DEAD M DLGF   +  IL ++P 
Sbjct: 120 QAFRRGVDIVVACPGRLDDLMRQGIVTLDDVEITVIDEADHMADLGFLPVVTRILAATPA 179

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  LA+ +  +    ++   N   + + +    V+ SD+    +  
Sbjct: 180 DGQRMLFSATLDNGVDKLARRFLDNPTMHSVDEANSPVAAMTHHVFEVSPSDKAA--LIT 237

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               GA   I+F  T+    +  + L E     V L G LSQ +R   L     G  RV 
Sbjct: 238 ELASGAGRRILFMRTKHQAKKLARKLTEDGIPAVDLHGNLSQAQRDRNLGAFGAGDVRVL 297

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ + D+ELV+H +  +  +  LHRSGRT RAG  G  V V   + +R    
Sbjct: 298 VATDVAARGVHVDDIELVVHVDPPNEHKAYLHRSGRTARAGSAGDVVTVCLPDQRRDVAS 357

Query: 359 LFREANVSVVWEPA-PSVEAIRERDAQR 385
           L R+A +SV   P  P  +A+     +R
Sbjct: 358 LLRKAKISVAPMPVTPRSDAVTALVGER 385


>gi|206579456|ref|YP_002237080.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288934043|ref|YP_003438102.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
 gi|206568514|gb|ACI10290.1| ATP-dependent RNA helicase SrmB [Klebsiella pneumoniae 342]
 gi|288888772|gb|ADC57090.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
          Length = 443

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/382 (30%), Positives = 184/382 (48%), Gaps = 8/382 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
            ++G+   T++Q A + P L  +D+L SA TG+GKT A+ L     LL    + S    P
Sbjct: 20  QDKGFTRPTAIQAAAIPPALDGRDILGSAPTGTGKTAAYLLPALQHLLDFPRKKS--GPP 77

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
             L + PTRELA+QV      L   T + +A   GGV+             IVV T GRL
Sbjct: 78  RILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRL 137

Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT--ISPAI 193
             +I+ +  +   ++ ++LDEAD MLD+GF  DIE I   +  +++ ++FSAT       
Sbjct: 138 LQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAGETRWRKQTMLFSATLEGDAIK 197

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
               +  ++        S   +     +      +  +   ++++L+   A  +IVF   
Sbjct: 198 DFAERLLEEPVEVSATPSTRERKKIHQWYYRADDIEHKTALLIHLLKQPEATRSIVFVRK 257

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R  V      L E       L GE+ Q +R+ A++ + DGR  V IATDVAARGID+PD+
Sbjct: 258 RERVHELAAKLHEAGINTCWLEGEMVQIKRNEAIKRLTDGRVNVLIATDVAARGIDIPDV 317

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE----ANVSVVW 369
             V + ++    +  LHR GRTGRAG+KG+++ ++  +      ++ R         V+ 
Sbjct: 318 SHVFNFDMPRTADIYLHRIGRTGRAGKKGIAISLVEAHDHLLLGKIGRYVEEPLKARVID 377

Query: 370 EPAPSVEAIRERDAQRILQDPL 391
           E  P   A  E+   +  +  L
Sbjct: 378 ELRPKTRAPSEKLTGKPSKKVL 399


>gi|198433176|ref|XP_002130371.1| PREDICTED: similar to ATP-dependent RNA helicase [Ciona
           intestinalis]
          Length = 816

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 199/468 (42%), Gaps = 26/468 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + +  +GY   T +Q   +   L +KDV+  A+TGSGKT AF + +   L    
Sbjct: 75  LSHSVFKGVIRKGYKVPTPIQRKCIPLILSDKDVVAMARTGSGKTAAFLIPMFEKL---- 130

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 +   AL ++PTRELA+Q  + ++ L   T +  A  +GG S+  +   +     
Sbjct: 131 QGAQSGAGARALLLSPTRELALQTLKFVKELGRFTSLRTACILGGDSMDEQFSAMHENPD 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + + TPGRL   +    L +S++  VV DEAD + +LGF++ +  +L   P  R+ L+FS
Sbjct: 191 VTIATPGRLMHVLIEMELRLSNIHYVVFDEADRLFELGFQEQLHEVLHRLPDDRQTLLFS 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN--AIVNILRYHGA 244
           AT+   +   AK    D   V +  +++    +    + +   D+      +    +   
Sbjct: 251 ATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLKLAFLHLREDDKLPALIHLLRNVFKET 310

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF ST+  V     VL         +   L    R   +   R+ +  V I TDVA
Sbjct: 311 EQTVVFVSTKHHVEFVKDVLKLFSINCSYVYSSLDHTARKINIAKFRNKKTMVLIVTDVA 370

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF---- 360
           ARG+D+P L+ VI+    +  +  +HR GR  RAGR G +  ++          L     
Sbjct: 371 ARGLDIPMLDNVINFSFPAKSKLFVHRVGRVARAGRTGTAYSLVCPEELAYVIDLHLFLG 430

Query: 361 REANVSVVWEPAPSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAG 419
           R  N +   +   + + +  R +QRI+ ++   L +I+ +                    
Sbjct: 431 RPLNFAKTGQTYQAWDNVYGRVSQRIIDEEQAALQNIKNNSD---------------LQA 475

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
            L++ +       +  P +      R R+  ++  +      +  G +
Sbjct: 476 LLKVAQNAYKQYLKSRPAASSESIKRSREILQSTNIALHPIYDESGDT 523


>gi|302543660|ref|ZP_07296002.1| putative ATP-dependent RNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461278|gb|EFL24371.1| putative ATP-dependent RNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 736

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/441 (28%), Positives = 207/441 (46%), Gaps = 8/441 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I   L++ G      +Q A +   +  KD+L   +TGSGKT++FGL L ++L    
Sbjct: 70  LPEQIVRKLAQNGVTTPFPIQAATIPDAMAGKDILGRGRTGSGKTLSFGLPLLTSL---A 126

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 127 GGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYALERGVD 186

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I      +  ++  VLDEAD+M D+GF  ++  ILD  P+  + L+FS
Sbjct: 187 ILVATPGRLRDIIDRGAATLDKVQVAVLDEADQMADMGFLPEVTEILDLVPQGGQRLLFS 246

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +L K Y  D V   + S     + + +  ++V    +D A V          
Sbjct: 247 ATLENEIDSLVKRYLVDPVTHEVDSAQGAVTTMTHHVLVV--KPKDKAPVTAAIAARKGR 304

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +ATDVAAR
Sbjct: 305 TIIFVRTQLGCDRVAEQLCDAGVRADALHGGMTQGARTRTLADFKDGYVNVLVATDVAAR 364

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL  +A V 
Sbjct: 365 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLMEDAGVD 424

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                      + + D  RI       +               +   + +     ++ R 
Sbjct: 425 ASRHIV-GGAGVFDEDVARITGARSLTEVQAEAAANAAKQAEREV--QDLTRELEKVQRR 481

Query: 427 GLCAPEEITPVSLVSGRDRFR 447
                EE   ++  + R+R  
Sbjct: 482 AGELREEADRLTARAARERGE 502


>gi|68490782|ref|XP_710786.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|68490809|ref|XP_710773.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432016|gb|EAK91525.1| potential DEAD box RNA helicase [Candida albicans SC5314]
 gi|46432030|gb|EAK91538.1| potential DEAD box RNA helicase [Candida albicans SC5314]
          Length = 496

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 170/366 (46%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +   L +  +V  T +Q   +   L  +D++  A TGSGKT+AF + L   +L++
Sbjct: 55  HINKKVLSNLIDNEFVEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK 114

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N   S       L I+PT ELAVQ+ +ELE +      +    +      +   ++   +
Sbjct: 115 N--VSKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSS 172

Query: 126 --HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
              I+V TP RL D ++   +++S ++ +++DEAD++ D GF +   E +   +  K R 
Sbjct: 173 KYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNPKIRK 232

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI  ++  +A +  KD +R+ I  +    + ID + V           +  +   
Sbjct: 233 SIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQQ 292

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +          L      V  +  E + ++R   ++  ++G   V I 
Sbjct: 293 GEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLIT 352

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D   + LVI+ ++  + +  +HR GRTGR G+ G +V    +   +  + + 
Sbjct: 353 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPIL 412

Query: 361 REANVS 366
                S
Sbjct: 413 NVMKQS 418


>gi|145351012|ref|XP_001419882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580115|gb|ABO98175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 440

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 187/376 (49%), Gaps = 14/376 (3%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   + +Q       +   D++  A TGSGKT+AFG+   + + ++         P+ L 
Sbjct: 47  FKTPSPIQAQSWPIIMSGHDMVGIAATGSGKTLAFGMPALTQIHSQPP--CKPGQPICLV 104

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG--AHIVVGTPGRLCD 137
           +APTRELA Q  +  +     +GV      GG   + ++  ++ G  A ++V TPGRL D
Sbjct: 105 LAPTRELAQQTAKVFDDAGEASGVRCVCVYGGAPKYEQKAQMKAGGGAAVIVATPGRLRD 164

Query: 138 HIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLA 197
            +    + +  +  +VLDEAD MLDLGF  +I  I  ++   R+ +MFSAT   ++ +LA
Sbjct: 165 FMEEGVIKLDRVTMLVLDEADRMLDLGFEPEIRAIAGATRADRQTVMFSATWPQSVQSLA 224

Query: 198 KNYQKDAVRVNIA-SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK-----NAIVFC 251
             +  + ++V I     +    I     +V   D+D  +  +++ +  K       ++F 
Sbjct: 225 SEFMCNPIKVRIGAEGLKASQSITQIVEVVEPQDKDRHLARVMKQYLGKGKEVPRTLIFG 284

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
             +   +   + L+      V + G++SQ +R  ++   + G +R+ IATDVAARG+D+ 
Sbjct: 285 LYKKECANLHQRLSREWPA-VCIHGDMSQHDREKSVDAFKKGTSRILIATDVAARGLDIK 343

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANVSVV 368
           ++E VI+       E+ +HR GRTGRAG  G++      + + RA  L    R+A   V 
Sbjct: 344 EVEYVINYTFPLTTEDYVHRIGRTGRAGATGLAHTFFTLHDKARAGELVNVLRKAGAEVP 403

Query: 369 WEPAPSVEAIRERDAQ 384
            E       +++++++
Sbjct: 404 EELTKFGTHVKKKESK 419


>gi|291448603|ref|ZP_06587993.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351550|gb|EFE78454.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 496

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 5/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  ALS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 74  DMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR--TA 131

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 132 GQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGGA 190

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + + ++F
Sbjct: 191 EVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRMLF 250

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 251 SATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHR--ATTEIAAREG 308

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 309 RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAA 368

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+   A +
Sbjct: 369 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPGQRREMTRVMTAAGI 428

Query: 366 SVVWEPAPSVEA 377
             +     S E 
Sbjct: 429 VPLITQIRSGEE 440


>gi|239945142|ref|ZP_04697079.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|239991603|ref|ZP_04712267.1| DEAD-box RNA helicase [Streptomyces roseosporus NRRL 11379]
          Length = 481

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 5/372 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  ALS +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL +     
Sbjct: 59  DMPAHLLAALSAQGVSVPFPIQGATLPNTLAGRDVLGRGRTGSGKTLAFGLALLAR--TA 116

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             R  P   PLAL + PTRELA QV   L        + +A  +GG+S+ R+   L+ GA
Sbjct: 117 GQRAEPRQ-PLALVLVPTRELAQQVTDALTPYARSVRLRLATVVGGMSIGRQVSALRGGA 175

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    + + ++F
Sbjct: 176 EVVVATPGRLKDLIERGDCTLDQVAITVLDEADQMADMGFMPQVTALLDQVRPEGQRMLF 235

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +  L + Y  D V  ++       + +++  + V  +D+              
Sbjct: 236 SATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGTDKHR--ATTEIAAREG 293

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             ++F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT+VAA
Sbjct: 294 RVMMFLDTKHAVDRLTQDLLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAA 353

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++    +R   R+   A +
Sbjct: 354 RGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPGQRREMTRVMTAAGI 413

Query: 366 SVVWEPAPSVEA 377
             +     S E 
Sbjct: 414 VPLITQIRSGEE 425


>gi|212379240|gb|ACJ24856.1| putative ATP-dependent RNA helicase [Streptomyces pactum]
          Length = 788

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 136/448 (30%), Positives = 215/448 (47%), Gaps = 10/448 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P+ I   L++ G      +Q A +   +  +D+L   +TGSGKT++FGL L +
Sbjct: 88  TFADLGLPEQIVRKLAQNGVTTPFPIQAATIPDAMAGRDILGRGRTGSGKTLSFGLPLLT 147

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
           TL   +   +    P  L + PTRELA+QV   L+      G+ + V  GG S+  +   
Sbjct: 148 TL---SGGHTEKKRPRGLILTPTRELAMQVSDALQPYGDVLGLKLKVVCGGTSMGNQIYA 204

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I     ++  ++  VLDEAD+M D+GF  ++  ILD  P+  
Sbjct: 205 LERGVDILVATPGRLRDIIDRGAASLDRVQVAVLDEADQMADMGFLPEVTEILDLVPQGG 264

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   I TL K Y  D V   +       S + +  ++V    +D A V    
Sbjct: 265 QRLLFSATLENEIDTLVKRYLVDPVTHEVDPSAGAVSTMTHHVLVV--KPKDKAPVTAAI 322

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG   V +A
Sbjct: 323 AARKGRTIIFVRTQLGADRVAEQLRDSGVRADALHGGMTQGARTRTLADFKDGYVNVLVA 382

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDVAARGI +  ++LV++ + + + ++ LHRSGRT RAG+ G  V +   + +R+  RL 
Sbjct: 383 TDVAARGIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGQSGTVVSLALPHQRRQIFRLM 442

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
            +A V           A  E D  RI       +     E        A+ + E++    
Sbjct: 443 EDAGVDASRHIVGGAGAFDE-DVARITGARSLTEV--QAESAANSAKQAEREVEQLTREL 499

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRD 448
            R+ R      EE   ++  + R+R  D
Sbjct: 500 ERVQRRATELREEADRLAARAARERGED 527


>gi|118586721|ref|ZP_01544158.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
 gi|118432809|gb|EAV39538.1| ATP-dependent RNA helicase [Oenococcus oeni ATCC BAA-1163]
          Length = 454

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 15/365 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+    +   T VQ+ I+ P +  +DV+  +QTGSGKT AF L + + L   
Sbjct: 9   NLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNALDPS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---------VVVAVCIGGVSVHR 116
            +         A+  +P+RELA Q+ +                    +     G     +
Sbjct: 69  LEE------TQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQ 122

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            R+  +    I +GTPGRL D +    L ++  +  V+DEAD  LD+GF +D++ I  + 
Sbjct: 123 IRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASAM 182

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +ML+FSATI   +T   K Y K+ +   I         ID   +     D++  I 
Sbjct: 183 PDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSKDKNEVIF 242

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L    +   +VF +T+  V      L     +V  + G +  +ER   ++ ++    +
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELAHFLDSQGLKVAEVHGGIEPRERRRTMKRIKKQEFQ 302

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARG+D+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +   + + + 
Sbjct: 303 YVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLSGTAITLYGPDEEDKV 362

Query: 357 ERLFR 361
           E L +
Sbjct: 363 EELEK 367


>gi|295131314|ref|YP_003581977.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
 gi|291375120|gb|ADD98974.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
          Length = 700

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G  +   +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 236 VPDEIVAALAKTGITDPFRIQIAAIPDAIAGRDVLGRASTGSGKTLAFGVPLLSRLSATP 295

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 296 REDNR---PRALILSPTRELAMQIADVLSSLASSMGLSTILIAGGMSYGPQTKAFKRGVD 352

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P   + L+FS
Sbjct: 353 LVVATPGRLVDLLETGDADLSGVAVTVLDEADHMAELGFMEAVGSILDAIPADGQRLLFS 412

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L + Y  + V   +  +    + + + A  +   ++    +     + + +
Sbjct: 413 ATLDGAVNKLVRRYMHEPVIHEVDPDKGSVATMTHHAFQIKPHEKVG--LMCEIANRSGH 470

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L E      AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 471 TIVFARTQRGASRMAEQLREAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 530

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V ++  + +R   RL+R+A V 
Sbjct: 531 GIDVDDVTLVLQVDPPMNFKDYLHRSGRTARAGHDGAVVSLVLPHQRRTMARLYRQAGVK 590

Query: 367 VVW 369
            V 
Sbjct: 591 PVE 593


>gi|301632627|ref|XP_002945383.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Xenopus (Silurana)
           tropicalis]
          Length = 564

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/418 (29%), Positives = 189/418 (45%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+ + GY   T+VQE  +   +       +  D++VS+QTGSGKT AF L + 
Sbjct: 39  LATELVQAVRDLGYTQPTAVQEKAIPMAMGRDAEAGRFIDLMVSSQTGSGKTAAFLLPVL 98

Query: 60  STLLAE------------------------------------NDRFSPASAPLALAIAPT 83
            TL+ +                                    N R   A+ P AL + PT
Sbjct: 99  HTLVRQQAGQQASERAEYERLCAEATARGEATPKRTRRKDPTNPRNFKAAVPGALILCPT 158

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A++VV TPGRL D  R   
Sbjct: 159 RELAQQVAHDAIDLVRHCKGLRVANVVGGMPYQLQIAKLQNANLVVATPGRLLDLQRSMQ 218

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I  LA     D
Sbjct: 219 IKLDQVQFLVVDEADRMLDLGFSDDLAEINQLTSQRKQTMMFSATFAPRIQQLAMRVMHD 278

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                      + + +  +             +   + + LR      AIVF ST+    
Sbjct: 279 GGSAVQKLTIDSPQEKHANIKQVLFWADNAQHKRKMLDHWLRDASIDQAIVFASTQMECD 338

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 339 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 398

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR G++V       +R+   +   +      E  P +E
Sbjct: 399 FGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQPFKAEVIPGME 456


>gi|170095563|ref|XP_001879002.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164646306|gb|EDR10552.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 654

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 108/401 (26%), Positives = 184/401 (45%), Gaps = 12/401 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++P        L +  ++++T +Q   L   L+ KDVL +AQTGSGKT+AF + + 
Sbjct: 1   KAFSDLPISDATKRGLKKAFFMDMTDIQTKSLPISLKGKDVLGAAQTGSGKTLAFLVPVL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L     ++  A    AL I+PTRELAVQ+   L  +         + IGG ++  ER 
Sbjct: 61  EILY--RRKWGAADGLGALIISPTRELAVQIFDVLRSIGGYHSFSAGLVIGGKNLKDERD 118

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V      L    +  G +  +L+ +VLDEAD +LD+GF+  +  +L   PK 
Sbjct: 119 RLSRMNILVATPGRLLQHMDQTVGFDADNLQVLVLDEADRILDMGFQKTLAALLSHLPKS 178

Query: 180 RRMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           R+ L+FSAT + ++        K+     + V  +S +    +++   V+  L  + + +
Sbjct: 179 RQTLLFSATQTQSVSDLARLSLKDPVYVGINVASSSTSTMPQNLEQHYVICELDKKLDVL 238

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDG 293
            + ++ H     IVF S+   V    +   +    V  L     Q++ +           
Sbjct: 239 WSFIKTHLQSKIIVFMSSCKQVRFVFETFCKMHPGVPLLHLHGKQKQSARLTMYTKFSSI 298

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNM 352
              V  ATD+AARG+D P ++ V+  +   + +  +HR GRT R   KG + +F++P   
Sbjct: 299 SHAVLFATDIAARGLDFPSVDWVLQMDAPEDADTYIHRVGRTARYESKGKALLFLMPSEE 358

Query: 353 QRRAERLFREA-NVSVVWEPAPSVEAIRERDAQRILQDPLF 392
           +     L + A +V  +   A   + I  +      QDP  
Sbjct: 359 EGMKVALQKRAIDVKQIKIRASKTQTIENQLQNLAFQDPEI 399


>gi|28901554|ref|NP_801209.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363105|ref|ZP_05775974.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
 gi|260880390|ref|ZP_05892745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|260894758|ref|ZP_05903254.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|260900107|ref|ZP_05908502.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|28810101|dbj|BAC63042.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308089408|gb|EFO39103.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           Peru-466]
 gi|308092166|gb|EFO41861.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AN-5034]
 gi|308109992|gb|EFO47532.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           AQ4037]
 gi|308111933|gb|EFO49473.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
           K5030]
          Length = 412

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 120/411 (29%), Positives = 192/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLRVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA+QV   +  +     +      GGV   ++++ L    
Sbjct: 66  PEQ-------KALILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQQQALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S +  +VLDEAD +LD+GF  D++ I   +  +R+  MF
Sbjct: 119 HILVATTGRLVDLANNGL-DLSKVHYLVLDEADRLLDMGFWPDVQNIAMQTSNQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +    K   +   +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKVKLLMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIELIKQNSWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +      AL G+ SQ ER  AL   + G+ +V IATD+ A
Sbjct: 238 QVLVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQIQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE 362
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++             L + 
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAIRHLTQR 357

Query: 363 A-------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           A          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ALPVQDLVGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPA 408


>gi|297811229|ref|XP_002873498.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319335|gb|EFH49757.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 427

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 174/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + S      AL +  TRELA Q+  E                 G    +  +D      
Sbjct: 113 GQVS------ALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRVLALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 227 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLNEMEKNRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSTVLNQVQE 406

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 407 RFEVDIKELP 416


>gi|160380699|sp|A7EYW0|DBP3_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp3
          Length = 596

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 189/376 (50%), Gaps = 16/376 (4%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q A     L  +DV+  A+TGSGKT+AF +      ++   +      P A+ 
Sbjct: 199 FKAPTPIQAAAWPFLLAGRDVIGVAETGSGKTMAFAVPCV-RYMSSLPKNQKNKGPRAVV 257

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           ++PTRELA+Q   ++  L   +G+      GGV    + R L   A IVV TPGRL D I
Sbjct: 258 VSPTRELAMQSYEQIVKLAKASGLECVCVYGGVPKDEQIRAL-KTADIVVATPGRLNDLI 316

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT----- 194
                ++S  + VVLDEAD MLD GF ++I  I++++P   +      T +   +     
Sbjct: 317 NQGCADLSKARYVVLDEADRMLDKGFEEEIRKIINTTPSLGKRQTLMFTATWPESVRELA 376

Query: 195 -TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-----NILRYHGAKNAI 248
            T   +  K A+  N   + R +S I  +  +V   D++  ++                +
Sbjct: 377 STFMTSPVKIAIGDNPTGDLRANSRIVQKVEVVEPRDKEYRLMQLLKQYQSGSQKDDRIL 436

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VFC  +   +R    + +  F+V  + G+LSQ++R+ +L+  + G   V +ATDVAARG+
Sbjct: 437 VFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGL 496

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL---FREANV 365
           D+P ++LVI+       E+ +HR GRTGRAG+ G+++ +  ++ + ++  L    + AN 
Sbjct: 497 DIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLFTEHDKAQSGALINVLKAANQ 556

Query: 366 SVVWEPAPSVEAIRER 381
            V  E       ++++
Sbjct: 557 PVPDELLKFGTTVKKK 572


>gi|308160101|gb|EFO62607.1| DEAD box RNA helicase Vasa [Giardia lamblia P15]
          Length = 663

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/394 (27%), Positives = 185/394 (46%), Gaps = 32/394 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            P+ +   + +  Y   T +QE  +   L   D+L ++QTGSGKT +F   + + L+   
Sbjct: 188 FPRDLIRNVEKLRYTQPTPIQENAIPLVLSSMDLLATSQTGSGKTFSFLSPIIAQLITSR 247

Query: 67  DRF----------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +              S PLA+ ++PTREL  Q+      L  KT ++V +  GG     
Sbjct: 248 AKDAISEDDKNMEQSMSFPLAVILSPTRELTQQIAFMCYQLTFKTDLIVRLVYGGEGARE 307

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +R  L+ G  IV+ TPGRL D +  K L++ +++ +VLDEAD+MLD+GF   I  ++   
Sbjct: 308 QRGLLKKGCDIVIATPGRLKDFLERKCLSLKYVRVMVLDEADKMLDMGFEPQIRDLVYKF 367

Query: 177 PK-------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS 229
                     R+ LMFSAT    +  +AK Y  +  R+++       + I  +    A +
Sbjct: 368 DMPGNGSNGNRQTLMFSATFGTGVQAMAKRYLHNEARIHVGQIGSTTTTIKQQFEYFAET 427

Query: 230 DRDNAIVNILRYHGA-----------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
              +    I +                  ++F  T+  +      L     +V  + G+L
Sbjct: 428 AIKSVDKRIDKLIHILKSPGSIPTASFLTLIFVETKKDIGYIVTKLLNGGLKVCEMHGDL 487

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q+ER N L+  +DG+  V +ATDVA RGID+  +  VI+ +   + +  +HR GRTGRA
Sbjct: 488 EQRERQNNLKSFKDGKTPVLVATDVAQRGIDIGAIRHVINFDFPKDIDTYIHRIGRTGRA 547

Query: 339 GRKGMSVFVI----PQNMQRRAERLFREANVSVV 368
           G +G++   I    P  + R  + +  ++   + 
Sbjct: 548 GAEGLATSFILLDTPHYILRDLKNILVQSKQPLP 581


>gi|34495357|gb|AAQ73499.1| zinc responsive protein ZD10B [Rattus norvegicus]
          Length = 482

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 94  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 153

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 154 AMLSRVEPAD------RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 207

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 208 RGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 267

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 268 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 327

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 328 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 387

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 388 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 447

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 448 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 479


>gi|52079209|ref|YP_078000.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52784575|ref|YP_090404.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|319647011|ref|ZP_08001237.1| YfmL protein [Bacillus sp. BT1B_CT2]
 gi|52002420|gb|AAU22362.1| putative ATP binding helicase [Bacillus licheniformis ATCC 14580]
 gi|52347077|gb|AAU39711.1| YfmL [Bacillus licheniformis ATCC 14580]
 gi|317390835|gb|EFV71636.1| YfmL protein [Bacillus sp. BT1B_CT2]
          Length = 376

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 188/361 (52%), Gaps = 8/361 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I E     G+ + T+VQ+  ++  L  +DV+  + TG+GKT+A+ L +   L A+   
Sbjct: 13  PFIQENWKASGFQDPTNVQKNAVDLILDGRDVIAESPTGTGKTLAYVLPILEKLEADQKN 72

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                   A+ +AP+REL +Q+   +      + +  A  IGG ++ +++  L+   HI+
Sbjct: 73  V------QAVILAPSRELVMQIFDVIVEWKKGSDIRAASLIGGANIKKQQEKLKKHPHII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            GTPGR+ + I+ K L +  +K +VLDE D +L    R  I+ I+ S+ + R++L FSAT
Sbjct: 127 AGTPGRVFELIKMKKLKMHEVKTIVLDETDHLLTPEHRGTIQSIIKSTLRDRQLLCFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +        +   KDA  + I     + + + ++ ++    D+   I+          A+
Sbjct: 187 LKDDAERELREMTKDAEVLKIKRSKEESAKVKHQFLVCDQRDK-VKILQKFSRLPGMQAL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF     +++ + + L  H  ++  L  E  + ER+  LQ    G   + +ATD+AARGI
Sbjct: 246 VFVKDIGNLNVYAEKLKFHHVEIGVLHSEAKKIERAKILQAFEAGEFTLLLATDIAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  VIHA+L  N E  +HRSGRTGRAG +G  + ++ +  + R ++L ++  + + 
Sbjct: 306 DIEDLPYVIHADLP-NVEGYIHRSGRTGRAGNEGTVISLVNRIEEERLKKLAKKLEIPLQ 364

Query: 369 W 369
            
Sbjct: 365 R 365


>gi|315289076|gb|EFU48474.1| DEAD/DEAH box helicase [Escherichia coli MS 110-3]
          Length = 432

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 126/363 (34%), Positives = 191/363 (52%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ+A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQDAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
            VL E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DVLNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTLPANSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|198413153|ref|XP_002124718.1| PREDICTED: similar to GE24123 [Ciona intestinalis]
          Length = 573

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 110/386 (28%), Positives = 182/386 (47%), Gaps = 15/386 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
               I   L +  +   T++Q       L  +DV+  AQTGSGKT++F L     + A+ 
Sbjct: 153 FSDHIDSKLRQSNFNVPTAIQSTGWPATLSGRDVIGIAQTGSGKTLSFILPALIHIQAQR 212

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P+AL + PTRELAVQ  R          +  A   GG S + +   +  G  
Sbjct: 213 P-LGRGEGPIALVMCPTRELAVQCERVANQFAGPF-IRTACAYGGSSRNIQLDKIGAGCS 270

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D ++   +N+     +VLDEAD MLD+GF   I  I++     R++ M+S
Sbjct: 271 ILVATPGRLMDFLQHGEVNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVTMWS 330

Query: 187 ATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-------- 235
           AT    I        + +        +S+ +   +I  +  +    D+            
Sbjct: 331 ATWPSEIRQLAKDFISTKSATHIKVGSSDLQASENIQQKFAICHSPDKFKQFKEIIIELK 390

Query: 236 -VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             N  ++      +VFC+T+A+  R ++ L     +  A+ G+ +Q +R + L   R GR
Sbjct: 391 NANKDQFSQFPKTLVFCNTKATCDRLSQQLRNAGLRSNAIHGDKTQSQRDSVLNNFRRGR 450

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           + + IATDVAARG+D+ D++ VI+ +      + +HR GRTGRAG++G S  ++ +    
Sbjct: 451 SNILIATDVAARGLDINDIQYVINFDTPPTCTDYIHRIGRTGRAGKQGTSYTLLTEENGA 510

Query: 355 RAERLFREANVSVVWEPAPSVEAIRE 380
             + L     V +  E  P +  +++
Sbjct: 511 IVKDLISSLEV-INHEVDPKLHKMQQ 535


>gi|323450950|gb|EGB06829.1| hypothetical protein AURANDRAFT_10453 [Aureococcus anophagefferens]
          Length = 511

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 117/494 (23%), Positives = 200/494 (40%), Gaps = 17/494 (3%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+++P       AL   G   L+ +Q+  + P L  +D+L +A+TGSGKT+AF + L   
Sbjct: 19  FDSLPLTDGTQAALKAMGLERLSKIQDKAIPPLLEGRDLLGNAKTGSGKTLAFLIPLVEL 78

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW---LYAKTGVVVAVCIGGVSVHRER 118
           L     RF   S    L I+PTREL++Q+   L     +         V  G        
Sbjct: 79  L--TKARFQQRSGLGGLVISPTRELSLQIYGVLRELLSVAKHGHTHGLVIGGANRRGEAE 136

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           R  +    +V      L       G    +L   V DEAD +L+ GF DD+  I+   P 
Sbjct: 137 RLGKGVCILVATPGRLLDHLQNTSGFVFKNLLMFVCDEADRILEQGFEDDLRGIVRCLPG 196

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRV---NIASENRQHSDIDYRAVLVALSDRDNAI 235
            R+  +FSAT +  +  LA+   K        + A      + ++   V+V   DR   +
Sbjct: 197 TRQTALFSATQTRKVEDLARLAIKSEPVYVGVHDAETTSTVAGLEQGYVVVEPGDRFRLL 256

Query: 236 VNILRYHGAKNAIV-FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
            + L+ H  K+ ++ F S+  +V  +  +L      V+ + G   Q +R+          
Sbjct: 257 FSFLKRHAKKHKVMVFFSSCNAVKFYADLLNYVDVPVLDIHGRQKQAKRTATFFEFCRAT 316

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG-RKGMSVFVIPQNMQ 353
           + V + TDVAARG+D+P +  ++  +   +P   +HR GRT R G   G ++  +  +  
Sbjct: 317 SGVLLCTDVAARGLDIPKVHWIVQYDPPDDPREYIHRVGRTARGGDGDGKALLFLIPSEL 376

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDA-QRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
               +  R A V++        +    + A  ++++   +L     D  +   +  A H 
Sbjct: 377 GFL-KFLRAAKVALHEYEFAVGKVANVQSALTKLVEKNYYLHKAAKDAYRSYLLAYASHG 435

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLS 472
            + +         A   A     P  +        D     K G G +D  + S     +
Sbjct: 436 HKDVFNVHALDLAAVAAAFGFAVPPRVDLNLSARGDTQARRKQGRGPKDQRRASGHDFSA 495

Query: 473 ---VGSKQKAEARW 483
               G + K +AR 
Sbjct: 496 SNPYGKRAKGDARQ 509


>gi|126275853|ref|XP_001386913.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|146325686|sp|A3GHW9|ROK1_PICST RecName: Full=ATP-dependent RNA helicase ROK1
 gi|126212782|gb|EAZ62890.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 558

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 170/364 (46%), Gaps = 4/364 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L E  +V  T++Q   L   L  +D++  A TGSGKT+AF + L  +LL  +
Sbjct: 127 LDSKLLSNLLEAEFVEPTAIQCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLVSS 186

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NGA 125
                      L I+PT ELA+Q+ +EL+ L     + VA+    ++       ++ +  
Sbjct: 187 KGRPKNYGITGLVISPTNELAIQIFQELQILTRGKKLNVAILSKQLANKLNNDIVKASKY 246

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI-LDSSPKKRRMLM 184
            I+V TP RL D ++ + +++S ++ +V+DEAD++ D GF +  + I    +  K R  M
Sbjct: 247 DIIVSTPLRLIDIVKNEKVDLSKVEQLVIDEADKLFDQGFVEQTDDILSHCTYTKIRKSM 306

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-- 242
           FSATI   +  +A +  +D +RV I  +    + ID + V     +     +  +     
Sbjct: 307 FSATIPSGVEEMAHSIMRDPIRVIIGRKEAASNTIDQKLVFTGSEEGKLLAIRQMIQEGE 366

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  +          L      V  +  E + ++R   ++  ++G   V I TD
Sbjct: 367 FKPPIIIFLQSIHRAKALFHELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTD 426

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V ARG+D   + +VI+ ++    +  +HR GRTGR G+ G +V    +   +  + +   
Sbjct: 427 VLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQAVKPIINV 486

Query: 363 ANVS 366
              S
Sbjct: 487 MKQS 490


>gi|284992234|ref|YP_003410788.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
           obscurus DSM 43160]
 gi|284065479|gb|ADB76417.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
           DSM 43160]
          Length = 474

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 122/384 (31%), Positives = 186/384 (48%), Gaps = 11/384 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++  P  + E L+  G      +Q A L   L  +DVL   +TGSGKT+AF L L +
Sbjct: 7   TFADLGVPAPLVEVLTASGITAPFPIQVATLPDSLAGRDVLGRGRTGSGKTLAFSLPLVA 66

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L A   R  P   P +L + PTRELA QV   ++ +    G+      GGV  + + + 
Sbjct: 67  RLAASVSRRQPKR-PRSLILVPTRELANQVAAVVDPMARALGMKTTTIFGGVGQNPQVQA 125

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L  G  +++  PGRL D I     ++  ++  +LDEAD M DLGF   ++ ++D +P+  
Sbjct: 126 LAGGIDVLIACPGRLEDLIGQGHCDLGAVEITILDEADHMADLGFLPGVKRLMDRTPEVG 185

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           + L+FSAT+   +  L K Y  + V  ++       S + +  + V  +D+    V    
Sbjct: 186 QRLLFSATLDNGVDVLVKRYLSNPVTHSVDPAVAPVSTMTHHVLQVQTADKAE--VVRQL 243

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
             G   +++F  T+    +  K L       V L G LSQ  R   L+    G +RV  A
Sbjct: 244 ASGLGRSVLFTRTKHQAKKLAKQLTASGIPAVDLHGNLSQNARERNLEAFTTGASRVLCA 303

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARGI + D+ LV+H +  +  +  LHRSGRT RAG +G  V V   +       L 
Sbjct: 304 TDIAARGIHVDDVALVVHVDPPAEHKAYLHRSGRTARAGAEGAVVTVSTPDQAGEVRTLA 363

Query: 361 REANVSVVWEPAPSVEAIRERDAQ 384
           R+A +      AP V  +R   A+
Sbjct: 364 RQAGI------APKVSVVRPGAAE 381


>gi|328883901|emb|CCA57140.1| putative ATP-dependent RNA helicase [Streptomyces venezuelae ATCC
           10712]
          Length = 772

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 131/443 (29%), Positives = 211/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L +TL    
Sbjct: 63  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLATL---A 119

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 120 GGHTDKKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 179

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ +++  VLDEAD+M DLGF  ++  +LD  P   + L+FS
Sbjct: 180 ILVATPGRLRDIINRGACSLENVQIAVLDEADQMADLGFLPEVTELLDQVPVGGQRLLFS 239

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I +L K Y  D V   +       + + +  ++V    +D A V          
Sbjct: 240 ATLENEIDSLVKRYLVDPVTHEVDPSAGAVTTMTHHVLVV--KPKDKAPVTAAIAARKGR 297

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 298 TIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 357

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G+ V +   + +R+  RL  +A V 
Sbjct: 358 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGVVVSLALPHQRRQIFRLMEDAGVD 417

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                     A     A+  +     L  +Q D         A+ +   +     R+ R 
Sbjct: 418 ASRHIVGGAGAFDPEVAE--ITGARSLTEVQADSANNAAKQ-AEREVVDLTKQLERLQRR 474

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
            +   EE   +   + R+R  D 
Sbjct: 475 AVELREEADRLVARAARERGEDP 497


>gi|261194144|ref|XP_002623477.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
 gi|239588491|gb|EEQ71134.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis
           SLH14081]
          Length = 465

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 25/366 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F+++     + EA    GY + T +Q   +   L+ +D++  A+TGSGKT AF L + 
Sbjct: 56  KSFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPIL 115

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L+ +        +   L +APTRELA Q+    E L +   V  AV +GG+ +  +  
Sbjct: 116 QALMEKPQ------SLFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDMVPQAI 169

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            L    HIVV TPGRL DH+      ++ +LK +V+DEAD +LDL F   ++ IL   P+
Sbjct: 170 ALGKKPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKVLPR 229

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
           +RR  +FSAT+S  + +L +      +R+         +                     
Sbjct: 230 ERRTYLFSATMSSKVESLQRASLSSGLRLPSFIPTNIKTLPRLSL--------------- 274

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
              +  ++AIVF  T     R   +L    F  + L G+LSQ  R  AL   R     + 
Sbjct: 275 -NEYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALSKFRSRSRDIL 333

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+D+P +++V++ +L  + +  +HR GRT RAG+ G +  ++ Q       R
Sbjct: 334 VATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWLR 393

Query: 359 LFREAN 364
           +     
Sbjct: 394 IENALG 399


>gi|114647106|ref|XP_001152033.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1 [Pan
           troglodytes]
          Length = 735

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 601


>gi|62858607|ref|NP_001016345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
 gi|89266955|emb|CAJ81385.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Xenopus (Silurana)
           tropicalis]
          Length = 479

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 159/391 (40%), Gaps = 17/391 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     +   +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 92  VKSFEKLHLKDELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVL 151

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVH 115
           A+ S +       +  + P  + ++PT ELA+Q G+ +E +      +  +         
Sbjct: 152 AMLSRVD------AKKTYPQCMCLSPTFELALQTGKVVEEMGKFCNGIKVIYAVRGNRPG 205

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +          GT    C  +R   +    +  +   +    +       +      
Sbjct: 206 KGTQIEAQIVIGTPGTVLDWCFKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRSM 265

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   +         + +A+
Sbjct: 266 PKTCQMLLFSATFGDSVWAFAERIVPDPNIIKLKKEELTLDNIQQFYDKCENKEQKYSAL 325

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        AIVFC TR   +  ++ + E   QV  LSGELS  +R+  +Q  R+G+ 
Sbjct: 326 CNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKD 385

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNP------ENLLHRSGRTGRAGRKGMSVFVIP 349
           +V + T+V ARGID+  + +V++ +L  N       E  LHR GRTGR G+KG++V +I 
Sbjct: 386 KVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNLIE 445

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            +     + +    N  +    +   + + +
Sbjct: 446 NSFVYMLKEIEEHFNTKIKKLNSWDFDEMEK 476


>gi|164659842|ref|XP_001731045.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
 gi|159104943|gb|EDP43831.1| hypothetical protein MGL_2044 [Malassezia globosa CBS 7966]
          Length = 606

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/380 (29%), Positives = 180/380 (47%), Gaps = 17/380 (4%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK    +P  I + L  +G    T +Q   L      +D++  A TGSGKT+ F L L  
Sbjct: 175 MK----VPDCIIDHLKAKGIQAPTPIQMQGLPTAFSGRDMIGIAFTGSGKTLTFSLPLIL 230

Query: 61  TLLAENDR--FSPASAPLALAIAPTRELAVQVGR------ELEWLYAKTGVVVAVCIGGV 112
             +    R  F     P+ L + P+RELA Q         E         +   +CIGG+
Sbjct: 231 FAVEAERRLPFEQGEGPVGLIVCPSRELARQTYDSIIAMAEALEYGGYARIRTLLCIGGI 290

Query: 113 SVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI 172
            +  +   L+ G HIVV TPGRL D +  K L +     + LDEAD M+D+GF DD+  I
Sbjct: 291 HMSEQSHVLRRGVHIVVATPGRLQDVLEKKRLGLHSCTYLCLDEADRMMDMGFEDDVRNI 350

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
           L    ++R+ L+FSAT+   I   A     D V VN+        D+      V+   + 
Sbjct: 351 LSFFTRQRQTLLFSATMPKKILDFAAQSLFDPVIVNVGRAGAASLDVVQEVEYVSQESKM 410

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
             ++  L+    +  IVF   +  V    + L     + VA+ G  +Q ER  A++  + 
Sbjct: 411 TQLLEALQKTAPR-VIVFSDNKNEVDDIHEFLLRKGVEAVAIHGSKTQDEREYAIESFKS 469

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI---- 348
           G+  V +A+ +A++G+D  +++ VI+  +  + E+ +H+ GRTGR+G+ G++   +    
Sbjct: 470 GKKDVMVASGIASKGLDFSNIQHVINYTMPKDIEDYVHQIGRTGRSGKTGVATTFVNAQT 529

Query: 349 PQNMQRRAERLFREANVSVV 368
           PQ+     + L  EA   V 
Sbjct: 530 PQSTMLDLKYLLLEAKQHVP 549


>gi|149908416|ref|ZP_01897079.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
 gi|149808579|gb|EDM68514.1| putative ATP-dependent RNA helicase DbpA [Moritella sp. PE36]
          Length = 438

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 127/385 (32%), Positives = 198/385 (51%), Gaps = 12/385 (3%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T +Q   L   L  KDV+   +TGSGKT AFGL L   L  E  R         L + P
Sbjct: 1   MTPIQAQSLPSILEGKDVIGQGKTGSGKTAAFGLGLLQRLDVERFRI------QTLVLCP 54

Query: 83  TRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV +E+  L      + V    GG+    +   L++GAHI+VGTPGR+ DH+  
Sbjct: 55  TRELADQVAKEIRKLARGIHNIKVLTLCGGMPFGPQIGSLEHGAHIIVGTPGRVLDHLTK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             L + +L   VLDEAD ML++GF+D ++ I++ +P  R+ L+FSAT    I  +A    
Sbjct: 115 GTLRLDNLTTFVLDEADRMLEMGFQDALDAIVEKAPSDRQTLLFSATFPKKIQAIAAKIM 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
            +   V +AS +   +   +   +    +R + +  +L  H  ++ ++FC+T+  V    
Sbjct: 175 NNPEMVEVASTHDDSTIKQHFYKVKNFGERLDTVRGLLLQHKPESTVIFCNTKKDVQDVA 234

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L    F V+AL G+L Q++R  AL    +    V +ATDVA+RG+D+  L+ VI+ ++
Sbjct: 235 DELGHFGFSVIALHGDLEQRDRDQALVRFSNKSISVMVATDVASRGLDIESLDAVINFQV 294

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           S + E  +HR GRTGRAG KGM+  +  +    +   L     + +  E  P +  + E 
Sbjct: 295 SHDSEIHVHRIGRTGRAGSKGMAYTIFDEKEAYQVALLEDRFGM-ITPEALPPMSVLNE- 352

Query: 382 DAQRILQDPLFLDSIQGDEKKMVDV 406
                +  P+    I G +K+ V  
Sbjct: 353 ---SPMMPPMECIRIDGGKKQKVRA 374



 Score = 60.4 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 17/119 (14%)

Query: 411 HDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            D ++     L   R G+  PE + P+S+++                             
Sbjct: 321 FDEKEAYQVALLEDRFGMITPEALPPMSVLN-----------------ESPMMPPMECIR 363

Query: 471 LSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDK 529
           +  G KQK  A  ++  L    GI+ + +G I++  +  +V V         + +   K
Sbjct: 364 IDGGKKQKVRAGDILGALTGKDGIDGKLVGKIQLFDNCAYVAVDTKVAKAAVQKIGKGK 422


>gi|333027865|ref|ZP_08455929.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
 gi|332747717|gb|EGJ78158.1| putative DEAD-box RNA helicase [Streptomyces sp. Tu6071]
          Length = 554

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 182/365 (49%), Gaps = 6/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 115 FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 174

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +   APL L + PTRELA QV   L        + +   +GG+S+ ++   L
Sbjct: 175 ---TAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANAL 231

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L+    + +
Sbjct: 232 RRGAELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQ 291

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L +++  D V  ++       + +++   L          V     
Sbjct: 292 TMLFSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHL-LYVADATVKRAVTHHIA 350

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+    R  K L        AL G  SQ +R+  L   ++G+    +AT
Sbjct: 351 AREGRLIMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTALVAT 410

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R  +RLF 
Sbjct: 411 NVAARGIHIDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPEQKRDTQRLFS 470

Query: 362 EANVS 366
            A + 
Sbjct: 471 AAGIR 475


>gi|329115610|ref|ZP_08244332.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
 gi|326695038|gb|EGE46757.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
          Length = 400

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/377 (27%), Positives = 172/377 (45%), Gaps = 19/377 (5%)

Query: 3   IFENI---PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++   P +   A  + G    T VQ+A +   L  KDVLV A TG+GKT A+ L L+
Sbjct: 4   SFHDLGLDPALCAHA-QQAGMAAPTPVQQAAIPAILDGKDVLVRAPTGTGKTAAYALPLS 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRE 117
             LL              L + PTREL +QV +       ++  G               
Sbjct: 63  QKLLKSRKPR------FVLVLVPTRELVLQVEKVFRTCLEESKKGQKQTAVTLVPLFGGS 116

Query: 118 RRDLQNGA-------HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
            R  Q           I++ TPGRL D +  +  ++S    +VLDE D +    F++D E
Sbjct: 117 DRAEQEHFLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTE 176

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +L   P  R+ L+ SAT   ++ +   N     V ++I    ++   I   A+ +  S 
Sbjct: 177 TLLSYLPSMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAALFLDPSQ 236

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
           +   I           +I+F  T+A   +   +L +       L G+++Q +R++ +   
Sbjct: 237 KPGFIKEFFSRAPKMRSIIFVRTKAEADQLAAILKKARLAAAPLHGDIAQDKRTSTVASF 296

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             GR  + +ATDVAARG+D+P ++ VI+ ++   PE  LHR GRTGR G KG ++ +   
Sbjct: 297 ESGRLFILVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTM 356

Query: 351 NMQRRAERLFREANVSV 367
           + ++   ++   A V +
Sbjct: 357 DDRKSLRQIEVGAQVKL 373


>gi|195015576|ref|XP_001984228.1| GH15125 [Drosophila grimshawi]
 gi|193897710|gb|EDV96576.1| GH15125 [Drosophila grimshawi]
          Length = 465

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 150/392 (38%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  ++   + + +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 77  VKTFEALHLKPELLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 136

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +          + P  L ++PT ELA+Q G     +      +            
Sbjct: 137 AMLSRVNVAQ------NHPQVLCLSPTYELAIQTGEVAARMGQFCPDIKLRFAVRGEEVD 190

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               +     I                 +    +  +   +            I      
Sbjct: 191 RNSKITEHILIGTPGKMMDWGIKMRLFDIKKVRVFVLDEADVMIATQGHHDQCIRIHKML 250

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           SP+ + +   +      +        +  +   +  +    +   Y         + NAI
Sbjct: 251 SPQCQMLFFSATYDKEVMDFARLIVSEPTIIRLMREQESLDNIKQYYVNCKNEDGKYNAI 310

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC TR + +     +      V  LSG+L+ ++R   L   R G+ 
Sbjct: 311 QNIYGCISIGQAIIFCHTRKTAAWLAAKMTADGHSVAVLSGDLTVEQRLAVLDRFRSGQE 370

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V +RGID+  + +V++ +L       ++ E  LHR GRTGR G+ G+++ +I 
Sbjct: 371 KVLITTNVLSRGIDIEQVTIVVNFDLPVDLRGNADCETYLHRIGRTGRFGKSGIAINLID 430

Query: 350 QNMQRRAERLFREANVS-VVWEPAPSVEAIRE 380
                   R  +E     +++    + + I +
Sbjct: 431 GEKSMTVCRTIKEHFQKDIIYLNTDNADDIEK 462


>gi|328906158|gb|EGG25933.1| DEAD/DEAH box helicase [Propionibacterium sp. P08]
          Length = 686

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 129/363 (35%), Positives = 191/363 (52%), Gaps = 5/363 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P  I  AL++ G      +Q A +   +  +DVL  A TGSGKT+AFG+ L S L A  
Sbjct: 237 VPDEIVAALAKMGIAAPFRIQIAAIPDAIAGRDVLGRAATGSGKTLAFGVPLLSRLSAAP 296

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                   P AL ++PTRELA+Q+   L  L +  G+   +  GG+S   + +  + G  
Sbjct: 297 REDKR---PRALILSPTRELAMQIADVLSPLASSMGLSTILIAGGMSYGPQTKAFKKGVD 353

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +VV TPGRL D +     ++S +   VLDEAD M +LGF + +  ILD+ P+  + L+FS
Sbjct: 354 LVVATPGRLVDLLETGDADLSGIAVTVLDEADHMAELGFMEAVGSILDAVPEDGQRLLFS 413

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+  A+  L K Y  D V   + S+    S + + A  +   ++    +     + + +
Sbjct: 414 ATLDGAVNKLVKRYMHDPVTHEVDSDKGSVSTMTHHAFQIKPHEKVG--LMCEIANRSGH 471

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            IVF  T+   SR  + L        AL G L+Q  R+  L   +DG   V +ATDVAAR
Sbjct: 472 TIVFARTQRGASRMAEQLRGAGVMAGALHGGLTQGARARVLAAFKDGSLPVLVATDVAAR 531

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GID+ D+ LV+  +   N ++ LHRSGRT RAG  G  V +I  + +R   RL+R+A V 
Sbjct: 532 GIDVDDVTLVLQVDPPMNSKDYLHRSGRTARAGHDGAVVSLILPHQRRTMARLYRQAGVK 591

Query: 367 VVW 369
            V 
Sbjct: 592 PVE 594


>gi|320586489|gb|EFW99159.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 440

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 176/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A ++ G+ + + VQ+  +   L   D++  A++G GKT  F LA    +    
Sbjct: 63  LKPELFRATADCGFEHPSEVQQTCIPQALIGGDIICQAKSGLGKTAVFVLATLQQIEPVA 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  R+ +
Sbjct: 123 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPEIKTGVFYGGTPIQKDAEILRNKE 176

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 177 THPHIIVGTPGRLNALVRDKYLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 236

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I  + + + ++     +  + +       +  +      ++  +  +L 
Sbjct: 237 VMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLD 296

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 297 ELQFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 356

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ +L ++ ++ LHR GR GR G KG+++  +     +   + +
Sbjct: 357 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSNEQDKEVLKAI 416

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 417 EKRFEVALPEFPKDGIDA 434


>gi|301112328|ref|XP_002905243.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262095573|gb|EEY53625.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 709

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/399 (25%), Positives = 188/399 (47%), Gaps = 10/399 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + + +++ + +    Y   TSVQ   +   L  +DVL +A TGSGKT AF + + + L  
Sbjct: 253 QQMKRLLLQNIERSEYKEPTSVQMQAIPSLLLRRDVLATAPTGSGKTAAFAIPILANL-- 310

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGV---SVHRERRDL 121
                  +S   ++ +APTR+LAVQ+  E   L A   + + +           + +  L
Sbjct: 311 -AAGSGTSSGIRSIVLAPTRDLAVQIRAEFTRLAAGKKLHITLLSKATAATIASQTKSKL 369

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKR 180
                +++ TP RL   I+   +++S ++ V LDEAD +L+LGF + + E     +  K 
Sbjct: 370 AVNHDVLIATPLRLVHLIQESKVDLSTVEMVCLDEADRLLELGFVEQVDEIFAACTHPKV 429

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNIL 239
           +  MFSAT+   +  LA+   +D V+V + ++N   S ID +   +     +  A+  +L
Sbjct: 430 QRAMFSATMLEGVEELAQTVLRDPVKVAVGTKNAGASTIDQKLVFVGKEEGKLVAMKQLL 489

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      A++F   +   +     L      + A+  + ++++R + ++  R G   V I
Sbjct: 490 QQGLQLPALLFVQNKERANELYHELLYDGVNIGAVHADRTKEQRDDVIRRFRTGEVWVLI 549

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ +RG+D   + +VI+ +   +  + +HR GRTGR GRKG +V +  ++       +
Sbjct: 550 CTDLMSRGMDFKAVNMVINYDFPQSAVSYIHRIGRTGRNGRKGKAVTLFTEDDMVYLRTI 609

Query: 360 FREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSI 396
                +S    P    S++       + +L+ P     I
Sbjct: 610 ANVMKISGCEVPDWMLSLKKASVSKRKELLKAPPMRHRI 648


>gi|209881121|ref|XP_002141999.1| ATP-dependent RNA helicae DDX39 [Cryptosporidium muris RN66]
 gi|209557605|gb|EEA07650.1| ATP-dependent RNA helicae DDX39, putative [Cryptosporidium muris
           RN66]
          Length = 427

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 177/370 (47%), Gaps = 9/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  + 
Sbjct: 51  LKPELIRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDE 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQNG 124
           +    + +   L I  TRELA QV  E +             V  G            N 
Sbjct: 111 N----SKSVECLCIGHTRELAFQVKNEFDRFSKYLKNIKTQVVYGGIPIQKDIELLSSNV 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            +I++GTPGR+   IR K L    +   VLDE D+ L+    R D++ I  S+P+K++++
Sbjct: 167 PNILIGTPGRIIALIRQKKLITDGVVHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+   I  + + + ++ V + +  E +     +    V ++ ++++  + ++L   
Sbjct: 227 MFSATMVKEIRDVCRKFMQNPVEIFVDDETKLTLHGLLQYYVKLSETEKNRRLTDLLDLL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  + +       +L E  F  + +   LSQQER +  Q  ++   R+ +ATD
Sbjct: 287 EFNQVIIFVKSVSRAQALHNLLTECSFPSICIHAGLSQQERISRYQQFKNFEKRIMVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  N ++ LHR GR GR G KG+++ ++  Q   +    +  
Sbjct: 347 LFGRGIDIERVNIVINYDMPENTDSYLHRVGRAGRFGTKGLAITLVASQTDSQILNDVQS 406

Query: 362 EANVSVVWEP 371
              V++   P
Sbjct: 407 RFEVNIAEMP 416


>gi|158290201|ref|XP_001230842.2| AGAP001057-PA [Anopheles gambiae str. PEST]
 gi|157018265|gb|EAU77138.2| AGAP001057-PA [Anopheles gambiae str. PEST]
          Length = 699

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/597 (20%), Positives = 238/597 (39%), Gaps = 31/597 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++ P  +     L+E  +   T +Q   + P +  KD+L +A+TGSGKT+AF + +
Sbjct: 16  IETFQDFPLSKKTLAGLAEADFTRPTVIQRESILPAIFGKDILAAAKTGSGKTLAFIIPI 75

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  E  +++      AL I PTRELAVQ+   +  +       + + IGG ++  ER
Sbjct: 76  LERLFVE--KWTRMDGLGALIITPTRELAVQIYETMTQVGRHHDFTIGLLIGGQNLKYER 133

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L N   I+      L    +    + ++LK +VLDEAD  LD+GF   ++ I+++ P+
Sbjct: 134 NRLHNLNIIIGTPGRLLQHMDQNPLFDTTNLKILVLDEADRCLDMGFSATMDSIIENLPE 193

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
            R+ ++FSAT + ++  LA+    + V++      +  +        V+V L+++   + 
Sbjct: 194 VRQTVLFSATQTNSVRDLARVKLVNPVQIAPHEHEQIATPAKLQQSYVVVDLANKLTMLW 253

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL---QMMRDG 293
           + L+ H  +  IVF ST   V  F +V  +     + L       +           +  
Sbjct: 254 SFLQTHPKQKVIVFFSTCKQVKYFYQVFKKLRPTSLLLPLYGGMNQEKRNKIYGDFCKKK 313

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
                +ATDVA+RG+D P +  V+  +   +    +HR+GRT R    G ++ V+  +  
Sbjct: 314 TNVCLLATDVASRGLDFPKVNWVVQIDCPEDVAQYIHRAGRTARLNTSGENLLVLLPHEV 373

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRE-RDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKH 411
                   +  + +        +        Q +L Q P   +S +      +  +    
Sbjct: 374 DPMLDSLEKNKIPIKQIKIDERQLFSPLLKIQSLLAQSPELKESAKRAFVAYIKSIALMK 433

Query: 412 DPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR--------------AFKVGG 457
           + E      L +           TP      R   R  S+                +   
Sbjct: 434 NKEVFQLHNLNLDEFANSLGLSNTPRVRFVSRTLERKRSKILNTSDSESKIKITGIETKD 493

Query: 458 GSRDNFKGSSWFSLSVGSK--QKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSA 515
            S +      +  +           +  L      +     + +  I+ +  ++ V++  
Sbjct: 494 SSDEEQDLDDFLRIKHIHNSSHCFASDDL---QASNVTTESEDVKKIQ-KKRISKVKLVK 549

Query: 516 DGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRFKGASK 572
             + + +R V  + G  +   G +   F  +K + F+ +       KR+K  K A +
Sbjct: 550 KSLHMSKRIVFDEDGAPVNTNGEQSNKFYDFKDARFRLEQQDADDKKRYKALKKAKR 606


>gi|332263067|ref|XP_003280577.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Nomascus
           leucogenys]
          Length = 578

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 167/383 (43%), Gaps = 59/383 (15%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F+    P  I   L ++G  + T +Q   +   L  +D++  A TGSGKT+ F L +
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239

Query: 59  ASTLLAENDR--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV------VVAVCIG 110
               L +  R  FS    P  L I P+RELA Q    LE+               A+CIG
Sbjct: 240 IMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIG 299

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           G+SV  +   +++G H++V TPGRL D ++ K +++   + + LDEAD M+D+GF  +  
Sbjct: 300 GMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGNST 359

Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD 230
            +     +   +   +                                            
Sbjct: 360 TLELQLXEVEYVKEEAKM------------------------------------------ 377

Query: 231 RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM 290
                +           ++F   +A V    + L     + VA+ G   Q+ER+ A++  
Sbjct: 378 ---VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAF 434

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-- 348
           R+G+  V +ATDVA++G+D P ++ VI+ ++    EN +HR GRTGR+G  G++   I  
Sbjct: 435 REGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINK 494

Query: 349 --PQNMQRRAERLFREANVSVVW 369
              +++    + L  EA   V  
Sbjct: 495 ACDESVLMDLKALLLEAKQKVPP 517


>gi|321314473|ref|YP_004206760.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
 gi|320020747|gb|ADV95733.1| putative ATP-dependent RNA helicase [Bacillus subtilis BSn5]
          Length = 376

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/359 (27%), Positives = 193/359 (53%), Gaps = 8/359 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E  +  G+   T VQE      +  KDV+  + TG+GKT+A+ L +   +  E     
Sbjct: 15  IQENWNASGFQTPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQ---- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+   HI+VG
Sbjct: 71  --KHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ K L +  +K +VLDEAD+++    R+ I+ I+ ++ + R++L FSAT+ 
Sbjct: 129 TPGRVFELIKAKKLKMHEVKTIVLDEADQLILPEHRETIKQIIKTTLRDRQLLCFSATLK 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                + +   ++   + +     +   + ++ ++    D+   ++  L       A+VF
Sbjct: 189 KETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDK-VKLLQKLSRLEGMQALVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
                ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD+AARG+D+
Sbjct: 248 VRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIISAFEDGEFPLLLATDIAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
            +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++  V +  
Sbjct: 308 ENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVELSE 365


>gi|163788491|ref|ZP_02182937.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
 gi|159876811|gb|EDP70869.1| inducible ATP-independent RNA helicase [Flavobacteriales bacterium
           ALC-1]
          Length = 372

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 192/375 (51%), Gaps = 12/375 (3%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLA 57
           M  F  +   +   + L E    N T +QE ++   L    D++  AQTG+GKT AFGL 
Sbjct: 1   MTTFSELGIHKSYIKGLKELNIKNPTEIQETVIPILLESNTDLIGLAQTGTGKTAAFGLP 60

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV--CIGGVSVH 115
           +   +              AL IAPTREL  Q+ ++L          +      GG  + 
Sbjct: 61  VLHAIDKNKSEV------QALIIAPTRELVQQIQKQLFRFTKYIDGKIFAEGVYGGEKMD 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R+ + L    HIVV TPGRL D +    ++IS++K +VLDEADEML +GF++D+  IL  
Sbjct: 115 RQIKALTRATHIVVATPGRLLDLVERGAVDISNVKILVLDEADEMLSMGFKEDLNKILKY 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDNA 234
           + KKR   +FSAT+   I ++ KNY     VRV +      + +I +  +   + D+ N 
Sbjct: 175 NTKKRNTWLFSATMPDDIKSIIKNYMSPDAVRVEVNKNALVNENISHHYIQTNIKDKLNM 234

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ IL     +  I+FC T+A      + L    F V AL G++ Q+ER   ++  ++  
Sbjct: 235 VIRILEKRQDERGIIFCRTKAGTKTLAQQLQHEGFAVGALEGDMQQKERDKVMRAFKNES 294

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            ++ ++TDV+ARGID+ DL  V+H +L  + +   HRSGRT RAG+ G S+ +I     +
Sbjct: 295 LQILVSTDVSARGIDVRDLSFVLHHQLPEHLDYYTHRSGRTARAGKTGQSIALIIPGEMQ 354

Query: 355 RAERLFREANVSVVW 369
           +   +     ++   
Sbjct: 355 KVIDIQSALGITFRE 369


>gi|318056293|ref|ZP_07975016.1| putative DEAD-box RNA helicase [Streptomyces sp. SA3_actG]
          Length = 449

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 182/365 (49%), Gaps = 6/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE++  P+ + + L+ +G      +Q A L   L  +D+L   +TGSGKT+AFGLAL + 
Sbjct: 10  FEDLDMPEALLKTLAAQGVTTPFPIQAATLPNSLAGRDILGRGRTGSGKTLAFGLALLAR 69

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +   APL L + PTRELA QV   L        + +   +GG+S+ ++   L
Sbjct: 70  ---TAGRRAEPRAPLGLVLVPTRELAQQVTDALTPYATSVNLRLTTVVGGLSLTKQANAL 126

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA ++V TPGRL D I      +  ++  VLDEAD+M D+GF   +  +L+    + +
Sbjct: 127 RRGAELLVATPGRLKDLIDRGDCTLQDVRTTVLDEADQMADMGFLPQVTRLLNQVEPEGQ 186

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L +++  D V  ++       + +++   L          V     
Sbjct: 187 TMLFSATLDANVDRLVRDFLDDPVVHSVDPSAGAVTTMEHHL-LYVADATVKRAVTHHIA 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+    R  K L        AL G  SQ +R+  L   ++G+    +AT
Sbjct: 246 AREGRLIMFVDTKHGADRLAKRLLADGVPAAALHGGRSQPQRTRTLDQFKNGQVTALVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +   + ++ LHR GRT RAG  G  V ++    +R  +RLF 
Sbjct: 306 NVAARGIHVDALDLVVNVDPPVDHKDYLHRGGRTARAGESGSVVTLVLPEQKRDTQRLFS 365

Query: 362 EANVS 366
            A + 
Sbjct: 366 AAGIR 370


>gi|268318980|ref|YP_003292636.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
 gi|262397355|emb|CAX66369.1| ATP-dependent RNA helicase [Lactobacillus johnsonii FI9785]
          Length = 461

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 192/389 (49%), Gaps = 12/389 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF+N  I   +   L +  +   T VQ +++   L +K+V+V A TGSGKT A+ + + 
Sbjct: 6   SIFQNEKIRSELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAYLIPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +              A+  AP+RELA Q+ +    L   +G+ +++     G     +
Sbjct: 66  NMIDENAP------VTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQ 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +       +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+   
Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKL 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            KK  +  FSATI   +    + Y      + I +       I    + V   D+ + + 
Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILY 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +
Sbjct: 240 KLLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQ 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I  +   + 
Sbjct: 300 YVVASDLAARGIDVPGVNLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQI 359

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           E L +   +   ++   + E +      R
Sbjct: 360 EDLEK-LGIHFDFKDLRNGELVERTHYHR 387


>gi|302918633|ref|XP_003052696.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733636|gb|EEU46983.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 434

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 181/378 (47%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   L   D++  A++G GKT  F LA    +   N
Sbjct: 57  LKAELLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVN 116

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       + +  TRELA Q+  E          +            +     ++ +
Sbjct: 117 GEVS------VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKE 170

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRD-DIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD      D++ +  ++P++++
Sbjct: 171 TCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQ 230

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  +  + + + ++     +  + +       +  +     +++  +  +L 
Sbjct: 231 VMMFSATLSEEVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLD 290

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++ + R+C+A
Sbjct: 291 DLQFNQVIIFVRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVA 350

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAERL 359
           TDV  RGID+  + L I+ +LS++  + LHR GR GR G KG+++  +  +  Q   + +
Sbjct: 351 TDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEI 410

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   V+A
Sbjct: 411 EKRFEVALPEFPKEGVDA 428


>gi|326488617|dbj|BAJ97920.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 510

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 116/380 (30%), Positives = 188/380 (49%), Gaps = 15/380 (3%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND--RFSPASAPLALA 79
           +    +       L  +D++  A TGSGKT+ F L L    L E       P   P  + 
Sbjct: 87  SPRPSRCRGFPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMLMPIVPGEGPFGMI 146

Query: 80  IAPTRELAVQVGRELEWL------YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
           I P+RELA Q    ++             +   +CIGG+ +  +   ++ G HIVV TPG
Sbjct: 147 ICPSRELAKQTYDVIDMFLTPLKQAGFPEIRPLLCIGGIDMRTQLDVVKKGVHIVVATPG 206

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           RL D +  K +N+ + + + LDEAD ++DLGF DDI  + D    +R+ L+FSAT+   I
Sbjct: 207 RLKDLLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPKKI 266

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
              AK+     V VN+      + D+      V    R   ++  L+       ++FC  
Sbjct: 267 QNFAKSALVKPVIVNVGRAGAANLDVIQEVEYVKEDARIIYLLECLQKTPPP-VLIFCEN 325

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           +A V    + L     + VA+ G   Q+ER NA++  ++G+  V +ATDVA++G+D PD+
Sbjct: 326 KADVDYIHEYLLLKGVEAVAIHGGKDQEERQNAIEFFKNGKKDVLVATDVASKGLDFPDI 385

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR----RAERLFREANVSVVW 369
           + VI+ ++ +  EN +HR GRTGR G+ G++   I +N         + L +EA   +  
Sbjct: 386 QHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRIPP 445

Query: 370 EPAPSVEAIRERDAQRILQD 389
             A  V+ +   DA+ I ++
Sbjct: 446 VLAELVDPL--EDAEAIAKE 463


>gi|123406720|ref|XP_001302841.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
 gi|121884169|gb|EAX89911.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
          Length = 633

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/371 (25%), Positives = 180/371 (48%), Gaps = 9/371 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   ++L +  +  ++ +Q+  L   L  +D++ +A+TGSGKT+AF + +  +
Sbjct: 51  FSSLPILESTKKSLEKSKFTKMSPIQKQTLLYTLCGRDIIGAAETGSGKTLAFCIPIVES 110

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +  +FS  S   A+ I+PTR+LA Q    L+ L   T +   +  GG+    E+  L
Sbjct: 111 L--KKAKFSKMSGIGAIIISPTRDLAAQTFDVLKKLIKDTDISAGLITGGMDFEMEQEGL 168

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+                N  HL+ +VLDEAD++++  F  D++ ++   P  R+
Sbjct: 169 SRLNIIICTMGRLKEHMETTSTFNADHLQILVLDEADKLMNKEFIRDLKHVIADLPDTRQ 228

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIVNIL 239
            ++F+AT + AI  ++K    +  RVN+  E              +V LS++ N + + L
Sbjct: 229 TMLFTATATKAIKDISKLSLSNPARVNLTEERSTVMPESLIQFYAIVNLSEKWNTLFSFL 288

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARV 297
           + H     IVF  T   V    +          ++ L+G+ +   R + ++  +  +   
Sbjct: 289 KMHLNDKIIVFMETVKMVRFAYEAFKHLRPGLPILHLTGKQNSNLRFDVIREFKSQKRCA 348

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
              TDVAARG+D PD+  V+  +  S+ +  +HR+GRT R  + G S+  +  + +   E
Sbjct: 349 IFTTDVAARGLDFPDITWVVQMDCPSSTDTYIHRAGRTARFHKMGKSIVFLTPSEKMMVE 408

Query: 358 RLFREANVSVV 368
           +L +  N+ + 
Sbjct: 409 KLAK-LNIELK 418


>gi|331214083|ref|XP_003319723.1| ATP-dependent RNA helicase DBP4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309298713|gb|EFP75304.1| ATP-dependent RNA helicase DBP4 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 844

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 174/402 (43%), Gaps = 17/402 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F ++P  +   + L    +  LT +Q   +   L+ +DVL +A+TGSGKT+AF + + 
Sbjct: 45  TLFSDLPISRATLKGLQAAKFEKLTPIQALAIPRALKGRDVLGAARTGSGKTLAFLIPVL 104

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +  ++       AL I+PTRELAVQ+   L  +         + IGG S+  ER 
Sbjct: 105 EMLYRQ--KWGAMDGLGALIISPTRELAVQIFEVLRSIGKFHAFSAGLVIGGKSLEDERD 162

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     +V           +    +  +L+ +VLDEAD +LD+GF + +  I+ S P  
Sbjct: 163 RLGRMNILVSTPGRLQQHLEQTTNFDSDNLQVLVLDEADRILDMGFANSVNAIISSLPNS 222

Query: 180 RRMLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           R+ L+FSAT + ++                A    +  +     ++    ++  L  + +
Sbjct: 223 RQSLLFSATQTKSVKDLARLSLTGDPEYVSARETGVERDLTTPKELVQSYMVTPLECKID 282

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMR 291
            +   L+ H     IVF S+   V    ++       +  L     Q++       +   
Sbjct: 283 YLWGFLKTHLKTKMIVFLSSCKQVRFVHEIFRHLRPGIPLLHLHGKQKQVKRLEIYERFS 342

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
                   ATD+AARG+D P ++ V+  +   + +  +HR GRT R    G + + ++P 
Sbjct: 343 SSPQVCLFATDIAARGLDFPSVDWVVQVDCPEDVDTYIHRVGRTARYQSGGKALLLLLPS 402

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLF 392
             +  +++      V    +P  S    +++  Q  +Q  +F
Sbjct: 403 EEEGMSKKWEARGIVVSKVKPNES----KKQSIQNQIQAQMF 440


>gi|290996400|ref|XP_002680770.1| DEAD/DEAH box helicase [Naegleria gruberi]
 gi|284094392|gb|EFC48026.1| DEAD/DEAH box helicase [Naegleria gruberi]
          Length = 614

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 168/372 (45%), Gaps = 21/372 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLRE------------KDVLVSAQTGSGKTVAF 54
           + QV+ + L E GY + T +Q  ++   ++E             D++  ++TGSGKT ++
Sbjct: 150 LSQVLCDTLKEIGYKHPTKIQREVIPVAIKEAFHDDETGFTKYNDIIGISETGSGKTASY 209

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            L +   LL      SP S   AL +APTRELAVQ+   +  L +K G+      GG S+
Sbjct: 210 VLPVLERLLQLKGDPSPCS---ALILAPTRELAVQIQGHVNALGSKIGITSTTLTGGTSI 266

Query: 115 HR---ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF 171
                  +  +    +                 N++H + +VLDEAD+ML   F   +  
Sbjct: 267 ANDSLRFKKNRYHVVVGTPGRVCDLLEFGKSNFNLNHTRFLVLDEADKMLGSEFDKWLTT 326

Query: 172 ILDSSPKKRRMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
           I +   +K+  +     + T                     +S+      +  + +L+  
Sbjct: 327 ISEKLRRKQCTVYLFSATMTTKIDKLLKLHQMTNPVKIQVTSSKYHTVDTLTQQYLLLPE 386

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             ++  +V +L  +  K  +VF    ++    + +L    F  V LSG + +  R + L+
Sbjct: 387 KYKEQYLVYLLNENPGKRILVFAGQNSTCILLSILLRSLKFPTVPLSGHMDETHRQHCLR 446

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
               G   + +ATD+AARG+D+P +++VI+ ++  + +  +HR GRT R G +G++V  +
Sbjct: 447 KFVSGDRPILVATDIAARGLDIPLVDIVINFDIPVHSKEYVHRVGRTARIGNQGLAVTFV 506

Query: 349 PQNMQRRAERLF 360
            Q   +  +++ 
Sbjct: 507 TQYDLQYFQKIE 518


>gi|260809021|ref|XP_002599305.1| hypothetical protein BRAFLDRAFT_64339 [Branchiostoma floridae]
 gi|229284582|gb|EEN55317.1| hypothetical protein BRAFLDRAFT_64339 [Branchiostoma floridae]
          Length = 709

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/437 (21%), Positives = 163/437 (37%), Gaps = 62/437 (14%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F   + P  + E ++   +   T +Q       L  KD++  AQTGSGKT+A+ L  
Sbjct: 135 VTTFAEGSFPDYVMEEIARSNFEFPTPIQAQGWPIALSGKDLVGIAQTGSGKTLAYMLPA 194

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +         P+ + + PTRELA QV          + +      GG     + 
Sbjct: 195 IVHINHQ-PFLERGDGPICVVLCPTRELAQQVQEVAVQFGHSSRIKNTCVYGGAPKGPQL 253

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  I + TPGRL D +     N+     +VLDEAD MLD+GF   I  I++    
Sbjct: 254 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 313

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIAS-ENRQHSDIDYRAVLVALSDRDNAIVN 237
            R+ LM+SAT    +  LA+ +  + ++VNI +     + +I     +V   ++D+  V+
Sbjct: 314 DRQTLMWSATWPKEVRQLAEEFLHEYIQVNIGALSLCANHNILQIIDVVHEHEKDHNSVH 373

Query: 238 ILRY-----------HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
                          H     I                 +     ++L    +  +  + 
Sbjct: 374 EYIQVNIGALSLCANHNILQIIDVVHEHEKDHNSIHEYIQVNIGALSLCANHNILQIIDV 433

Query: 287 LQMMRDG---------------------------------------RARVCIATDVAARG 307
           +                                                +CI  D +   
Sbjct: 434 VHEHEKDHKLIRLLEEIMGEKENKTIIFVETKRRVDDLTRRMRRDGWPAMCIHGDKSQPE 493

Query: 308 IDL-----PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--- 359
            D       D++ VI+ +  ++ E+ +HR GRT R+ R G +      N  ++A+ L   
Sbjct: 494 RDWVLNDITDVKFVINFDYPASAEDYVHRIGRTARSERTGTAYTFFTPNNMKQAKELVSV 553

Query: 360 FREANVSVVWEPAPSVE 376
            +EA   +  +    V+
Sbjct: 554 LQEARQQINPKLIEMVD 570


>gi|325287731|ref|YP_004263521.1| DEAD/DEAH box helicase domain-containing protein [Cellulophaga
           lytica DSM 7489]
 gi|324323185|gb|ADY30650.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
           7489]
          Length = 445

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/423 (26%), Positives = 194/423 (45%), Gaps = 13/423 (3%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLAL 58
           K F  +     + ++L+E      T +Q   +   L   KD +  A+TG+GKT AFGL L
Sbjct: 3   KKFSKLGVSTPLLKSLAELEITTPTEIQVKSIPVLLEANKDFVGLAKTGTGKTAAFGLPL 62

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRE 117
              +  E+          A+ + PTREL  Q+   L    +    V +A   GG  +  +
Sbjct: 63  IQLINTESANI------QAVIVVPTRELGQQIYSNLVSFASHMPAVSIASVCGGTPIKPQ 116

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+   HIV+ TPGRL D ++   + I+  K +VLDEADEM+          +     
Sbjct: 117 IERLKENTHIVIATPGRLIDLLKRNAITINSAKYLVLDEADEMVTSLKDGLDTIVAALPK 176

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
            KR +L  +         +     K   +V++  E   ++ ID++ V+V   ++   +++
Sbjct: 177 DKRTILFTATMPGTIKQIVQNYLSKHVTQVSVNMETVGNTSIDHQYVVVEPIEKLEVLMH 236

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L     +  I+FC T+A+V++  K LA + F   AL G L+Q  R   +   R+G  ++
Sbjct: 237 FLNSKEGQRGIIFCKTKAAVNKLAKNLAINKFSSGALHGSLTQPIRDRIMGQFREGHIKI 296

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARG+D+ ++  V++  L    E  +HRSGRT RAG  G S+ ++ +  ++   
Sbjct: 297 LVATDLAARGLDVKEITYVVNYHLPDVYETYVHRSGRTARAGADGFSLTILQKEEEQDIA 356

Query: 358 RLFREANVSVVWEPAPSVEAIRERDA---QRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
               E  ++          +I E +     R +       +I  + K+ V  +      E
Sbjct: 357 EFENELGITFKKFKKADAASIEENNTLLWARKIFKTKPNHTISPEFKEKVHTIFHHLTKE 416

Query: 415 KIA 417
           ++ 
Sbjct: 417 ELV 419


>gi|164656665|ref|XP_001729460.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
 gi|159103351|gb|EDP42246.1| hypothetical protein MGL_3495 [Malassezia globosa CBS 7966]
          Length = 801

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 101/399 (25%), Positives = 180/399 (45%), Gaps = 26/399 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F  IP      + L   G++++T +Q+A L   LR +DVL SA+TGSGKT+AF + + 
Sbjct: 48  ETFSVIPLSSRTRQGLKRAGFIDMTPIQKASLPASLRGRDVLGSARTGSGKTLAFLIPVL 107

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +  R+S      AL ++PTRELA+Q+   L  +         + IGG  +  E+ 
Sbjct: 108 ERLYRQ--RWSHTDGLGALVVSPTRELAMQIFDVLRSIGGSHTFSAGLVIGGKDLTHEQD 165

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L+    ++      L    +  G + S+L+ +VLDEAD +LD+GF + +  IL+  P  
Sbjct: 166 RLRKMNILIATPGRLLQHLDQTVGFDASNLQVLVLDEADRILDMGFANTLNAILEHLPSS 225

Query: 180 RRMLMFSATISPAITT------------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
           R+ L++SAT +  +                ++        + +S +     ++   +LV 
Sbjct: 226 RQTLLYSATQTRRVKDLARLSLSDPALITVQDPDATDPTSSSSSSSSTPRHLEQFYMLVD 285

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN-- 285
           L  + + + + L  H     +VF S+   V    +V  +    +  L+    Q++     
Sbjct: 286 LPRKLDMLFSFLCSHTQCKVLVFMSSCRQVQFAHEVFCKLRPGLPLLALHGKQKQPRRLK 345

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                R  +     ATD+AARG+D P ++ V+  ++  + +  +HR GRT R    G ++
Sbjct: 346 IFDEFRRSKHAALFATDIAARGLDFPAVDWVVQVDVPDSADTYIHRVGRTARYHAHGKAL 405

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
             +    Q          +V +          I+ RDA+
Sbjct: 406 LFVLPTEQNGMLAALERVHVPIT--------DIKARDAK 436


>gi|299829298|ref|NP_001005895.2| ATP-dependent RNA helicase DDX19B [Rattus norvegicus]
          Length = 479

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N      + P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSQVEPAN------NHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|52551335|gb|AAU84666.1| zinc responsive protein Zd10A [Rattus norvegicus]
          Length = 482

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 94  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 153

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N      + P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 154 AMLSQVEPAN------NHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 207

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 208 RGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 267

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 268 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 327

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 328 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 387

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 388 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 447

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 448 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 479


>gi|257067967|ref|YP_003154222.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
 gi|256558785|gb|ACU84632.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
          Length = 498

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 118/360 (32%), Positives = 180/360 (50%), Gaps = 3/360 (0%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P V+  AL+  G    T +Q A L   L  +DVL   +TGSGKT AF L L + LL E 
Sbjct: 11  VPSVLTGALAPLGITEPTPIQAATLPDSLSGRDVLGRGRTGSGKTYAFLLPLVARLL-EQ 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R   A  P +L +APTRELA Q+   L+ L A  G+  AV  GGV  + +   L  G  
Sbjct: 70  PRKRAARRPRSLVLAPTRELASQLAESLKPLEAAAGLRSAVVFGGVGQNPQVNALARGID 129

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++  PGRL D +     ++S ++  V+DEAD M D+GF   +  IL+++P + + ++FS
Sbjct: 130 VLIACPGRLLDLMGQGHADLSAIEITVIDEADHMADMGFLPMVRRILEATPSRGQRMLFS 189

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   +  L K +  + V  +          +++  + V  + R +  V          
Sbjct: 190 ATLDSGVNKLVKQFLHEPVTHSADPATSPVGTMEHHVLEVDAAARFD--VLRDLAAAPGR 247

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+       + LA      V L G LSQ  R+  L+    G A   + TD+AAR
Sbjct: 248 TIMFTRTKYGAKNLARKLAARGVDAVDLHGNLSQNARTRNLEAFGSGTATTMVCTDIAAR 307

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI + ++ +V+HA+     +  LHRSGRT RAG  G  + V   + +R    L R+A + 
Sbjct: 308 GIHVDEVAIVVHADPPVEHKAYLHRSGRTARAGESGTVITVQTPDQKRDVSDLMRKAGIR 367


>gi|159485890|ref|XP_001700977.1| hypothetical protein CHLREDRAFT_113060 [Chlamydomonas reinhardtii]
 gi|158281476|gb|EDP07231.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 440

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 160/405 (39%), Gaps = 6/405 (1%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
           +A+ E G+ ++T VQ   +   L  +DVL +A+TGSGKT+AF +  A  L     +F P 
Sbjct: 1   QAIDEMGFSHMTEVQARTIPALLTGRDVLGAARTGSGKTLAFLIPCAELLY--RAKFMPR 58

Query: 73  SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
           +   A+ I+PTRELA+Q+      L         + +GG +      +       V    
Sbjct: 59  NGTGAVVISPTRELALQIYGVARDLLKHHTQTHGIVMGGANRCGRLGEPGAQVTPVWAVS 118

Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
           G +      +       +  +        D      I  IL    +         T    
Sbjct: 119 GGVWWGAPTEHARRIQCQNKLRG---WGWDQASEGQIIKILPKERQTMLFSATQTTKVED 175

Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS 252
           +  ++  ++   V V+          ++    +V    +   +   L+ +  K  +VF S
Sbjct: 176 LARISFKHKPLYVGVDDGRSVATREGLEQGYCVVPADKKFLLLFTFLKKNLNKKVMVFFS 235

Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
           +  SV    ++L      V  + G+  QQ+R+            + + TDVAARG+D+P 
Sbjct: 236 SCNSVKFHAELLNYIDIPVKDIHGKQKQQKRTTTFFEFCQAEKGILLCTDVAARGLDIPA 295

Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           ++ +I  +   +P   +HR GRT R         ++    +    +  ++A V +     
Sbjct: 296 VDWIIQFDPPDDPREYIHRVGRTARGQAGRGRALLLLLPEELGFLKYLKDAKVPLNEYDF 355

Query: 373 PSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           P+ + A  +   +R+++   +L     D  +   +    H  ++I
Sbjct: 356 PTSKLANVQSQLERLVEKNYYLHQSAKDAFRSTLLAYNSHSLKEI 400


>gi|297196654|ref|ZP_06914052.1| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297153328|gb|EDY66637.2| ATP-dependent RNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 419

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 115/359 (32%), Positives = 182/359 (50%), Gaps = 5/359 (1%)

Query: 19  GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
           G      +Q A L   L  +DVL  A+TGSGKT+AFGLAL +       R +    PL L
Sbjct: 9   GVTEPFPIQAATLPDALAGRDVLGRARTGSGKTLAFGLALLTR---TAGRRAEPKQPLGL 65

Query: 79  AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
            + PTRELA QV   L+      G+ +A  +GG+S+ R+   L+ GA +VV TPGRL D 
Sbjct: 66  VLVPTRELAQQVSDVLDPYALALGLRLATVVGGLSIGRQATLLRAGADVVVATPGRLTDL 125

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
           +  +   +  ++  VLDEAD+M D+GF   +  +LD      + ++FSAT+   +  L  
Sbjct: 126 VARRDCRLDQVRITVLDEADQMCDMGFLPQVSELLDQVRPGGQRMLFSATLDRNVDHLVG 185

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
            Y  D V   +       + +++  + +  +D+                ++F  T+ +V 
Sbjct: 186 RYLHDPVLATVDRAAGAVATMEHHVLNIHPADKYATATE--IAARDGRVLMFLDTKHAVD 243

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
           +FT+ L     +  AL    SQ +R++ L   + G   V +AT+VAARGI +  L+LV++
Sbjct: 244 QFTRHLRGSGIRAAALHSGKSQPQRTHTLAQFKSGEVTVLVATNVAARGIHVDALDLVVN 303

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEA 377
            +  ++P++ LHR GRT RAG  G  V ++    +R   R+  +A +  V     S E 
Sbjct: 304 VDPPADPKDYLHRGGRTARAGESGRVVTLVTPGQRRDVNRMMSDAGIRPVVTQVRSGEE 362


>gi|149242263|ref|XP_001526437.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|152032665|sp|A5E058|PRP5_LODEL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|146450560|gb|EDK44816.1| hypothetical protein LELG_02995 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 994

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 194/396 (48%), Gaps = 18/396 (4%)

Query: 7   IPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +P+ +   +  + G+   + +Q   +   L  +D++  A+TGSGKT+++ L +   +  +
Sbjct: 394 MPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHI-QD 452

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                P   P+ L ++PTRELA+Q+ +E+    +   + V  C GG ++  +  +L+ G 
Sbjct: 453 QLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGV 512

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +++V TPGRL D +   G  I+ L+    VVLDEAD M D+GF   I+ I       ++ 
Sbjct: 513 NVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFDMGFEPQIQKIFTQIRPDKQT 572

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           ++FSAT    +  LAK    + + + +   +   S+I    +L   +D+           
Sbjct: 573 VLFSATFPRKLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHKIQKLED 632

Query: 243 ----------GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          +VF   +    +   VL +     +A+ G   Q +R +A++   D
Sbjct: 633 ILSRFFDLGKNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAIHGGKDQIDRKHAIREFSD 692

Query: 293 GR--ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
            +    V IAT +AARG+D+ +L+LV++ E  S+ E+ +HR GRTGRAG+ G ++  +  
Sbjct: 693 DQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAITFVDN 752

Query: 351 NMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
             ++    L +   +S     +  ++ I ++  ++I
Sbjct: 753 TQEKEISILVKALKMSSRAVDS-KLQEIADKFMKKI 787


>gi|145610002|ref|XP_366730.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|152112305|sp|A4RBS3|SUB2_MAGO7 RecName: Full=ATP-dependent RNA helicase SUB2
 gi|145017381|gb|EDK01744.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 436

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 176/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   D++  A++G GKT  F L     +    
Sbjct: 59  LKPELLRAIGDCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVA 118

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++ +
Sbjct: 119 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFFGGTPIQKDAELLKNKE 172

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +S ++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 173 THPHIIVGTPGRLNALVRDKFLRLSSVRIFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 232

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++     +  + +       +  +     +++  +  +L 
Sbjct: 233 VMMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYFVALEEKEKNRKLNELLD 292

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 293 DLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVA 352

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ ++ ++ ++ LHR GR GR G KG++V  +  +  +     +
Sbjct: 353 TDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAI 412

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V +   P   ++A
Sbjct: 413 EKRFEVPIPEFPKDGIDA 430


>gi|73957034|ref|XP_536790.2| PREDICTED: similar to DDX19-like protein isoform 1 [Canis
           familiaris]
          Length = 478

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +            P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAE------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PKNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|33602957|ref|NP_890517.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
 gi|33568588|emb|CAE34346.1| putative ATP-dependent RNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 423

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/420 (29%), Positives = 203/420 (48%), Gaps = 11/420 (2%)

Query: 40  VLVSAQTGSGKTVAFGLALASTLLA-ENDRFSPASAPL-ALAIAPTRELAVQVGRELEWL 97
           ++ +AQTG+GKT AF L +   L+   N   SPA  P+ AL + PTRELA QV   ++  
Sbjct: 1   MMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRY 60

Query: 98  YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
              T +  AV  GGV +  ++  L+ G  ++V TPGRL DH+  K +N+S +  +VLDEA
Sbjct: 61  SLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEA 120

Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
           D MLD+GF  D+E I+   P +R+ L+FSAT S  I  L ++Y    V + +A+ N    
Sbjct: 121 DRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATAD 180

Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
            +   A  +    +  A+V++++  G K  IVF +T+   +R  + L     +  ++ G+
Sbjct: 181 TVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGD 240

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
            +Q +R  AL+  + G   V +ATDVAARG+D+  +  VI+ +L  N E+ +HR GRTGR
Sbjct: 241 KTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGR 300

Query: 338 AGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           AG  G ++ +   + +R    + +     V          +  R   R    P       
Sbjct: 301 AGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVARSHGRDRDAPR------ 354

Query: 398 GDEKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGG 457
            + ++  D    +       A   R     L            +  +  + + R+     
Sbjct: 355 -ERERGADRHRGER--RTSGAAAPRQPVDELFYKPYEPANGQPASPETPKQEGRSNAPKR 411


>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
 gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
           corporis]
          Length = 579

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/342 (30%), Positives = 170/342 (49%), Gaps = 7/342 (2%)

Query: 1   MKIF--ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F     P  + + +  +G+   T +Q       L  ++++  A+TGSGKT+++ L  
Sbjct: 98  IKHFREAGFPDYVLKEIKRQGFSEPTVIQAQGWPIALSGRNLVGIAKTGSGKTLSYILPA 157

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              +  +  R      P+ L +APTRELA Q+    E     +G+      GG     + 
Sbjct: 158 IVHINHQ-PRLQRGDGPIVLVLAPTRELAQQIKEVTEDFGHSSGIRNTCIFGGAKRLSQA 216

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           RDL+ G  IV+ TPGRL D +     N+     +VLDEAD MLD+GF   I  I +    
Sbjct: 217 RDLEKGVEIVIATPGRLLDFLDCGKTNLKRTTYLVLDEADRMLDMGFEPQIRKIFEQIKP 276

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL----SDRDNA 234
            R++LM+SAT    +  LAK +  D  ++N+ S     +    + + V        + + 
Sbjct: 277 DRQVLMWSATWPKVVRNLAKEFLNDYTQINVGSLQLSANHNILQIIDVCQDSEKERKLST 336

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++  +        IVF  T+  V   T+ +    +   ++ G+ +Q ER + LQ  R+GR
Sbjct: 337 LLKEIMSEKENKTIVFIETKKRVEEITRKMRRDGWPAESIHGDKNQSERDHVLQDFRNGR 396

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
             + +ATDVAARG+D+ D++ VI+ +  +N E+ +HR GRT 
Sbjct: 397 RPILVATDVAARGLDVEDVKFVINFDYPNNSEDYVHRIGRTA 438


>gi|171684483|ref|XP_001907183.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942202|emb|CAP67854.1| unnamed protein product [Podospora anserina S mat+]
          Length = 433

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 175/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   D++  A++G GKT  F L     +    
Sbjct: 56  LKPELLRAIADCGFEHPSEVQQTTIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVA 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          +                  ++  
Sbjct: 116 GECS------VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEILKNKD 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HI+VGTPGRL   +R K L +  ++  VLDE D+MLD    R D++ I  ++P++++
Sbjct: 170 THPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNILR 240
           ++MFSAT+S  I  + + + ++     +  + +       +  L      ++  +  +L 
Sbjct: 230 VMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYLALEEREKNRKLNELLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L E  F  +A+   +SQ+ER    +  ++   R+C+A
Sbjct: 290 DLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVA 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR-AERL 359
           TDV  RGID+  + L I+ ++ ++ ++ LHR GR GR G KG+++  +     +   + +
Sbjct: 350 TDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVTTEQDKEVLQAI 409

Query: 360 FREANVSVVWEPAPSVEA 377
            +   V++   P   ++A
Sbjct: 410 EKRFEVALPEFPKEGIDA 427


>gi|301609527|ref|XP_002934380.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana)
           tropicalis]
          Length = 847

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 166/355 (46%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q  ++   L  KDV+  A+TGSGKT  F + +   L A  
Sbjct: 80  LSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAH- 138

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +    L ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 139 ---SAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 195

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ L+FS
Sbjct: 196 IIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFS 255

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  + +    +      V + D+   +++         
Sbjct: 256 ATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQ 315

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       ++L         +   L Q  R   L +   G+ R  + TDVA
Sbjct: 316 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVTDVA 375

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARGID+P L+ VI+       +  LHR GR  RAGR G +  +I  +       L
Sbjct: 376 ARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYVYDL 430


>gi|89269500|emb|CAJ82782.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus (Silurana)
           tropicalis]
          Length = 437

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 166/355 (46%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q  ++   L  KDV+  A+TGSGKT  F + +   L A  
Sbjct: 80  LSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAH- 138

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +    L ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 139 ---SAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 195

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ L+FS
Sbjct: 196 IIIATPGRLMHVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFS 255

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  + +    +      V + D+   +++         
Sbjct: 256 ATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQ 315

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       ++L         +   L Q  R   L +   G+ R  + TDVA
Sbjct: 316 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVTDVA 375

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARGID+P L+ VI+       +  LHR GR  RAGR G +  +I  +       L
Sbjct: 376 ARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSLIAPDEIPYVYDL 430


>gi|77628154|ref|NP_001005381.2| zinc responsive protein ZD10B [Rattus norvegicus]
 gi|51260031|gb|AAH79094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a [Rattus norvegicus]
          Length = 478

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKVGEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|50815|emb|CAA26843.1| unnamed protein product [Mus musculus]
 gi|50820|emb|CAA26846.1| unnamed protein product [Mus musculus]
          Length = 370

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 2   NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 61

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 62  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 115

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 116 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 175

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 176 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 235

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 236 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 295

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 296 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 355

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 356 NTSIEEMPLNVADLI 370


>gi|17505370|ref|NP_492779.1| hypothetical protein B0511.6 [Caenorhabditis elegans]
 gi|15375231|gb|AAC17654.2| Hypothetical protein B0511.6 [Caenorhabditis elegans]
          Length = 544

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 111/425 (26%), Positives = 200/425 (47%), Gaps = 13/425 (3%)

Query: 2   KIFENI----PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
             F ++       + +A+   G+  +T +Q   ++P L  KDVL SA+TGSGKT+AF L 
Sbjct: 66  TTFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLP 125

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               L   N  +   +    + ++PTREL++Q    L  L   + +   + +GG +   E
Sbjct: 126 AIELLHKLN--WKQHNGTGVIIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAE 183

Query: 118 RRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +  L  G  I+V TPGRL DH        + ++K +++DEAD +LD+GF  +++ +L   
Sbjct: 184 KDKLAKGVSILVATPGRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHL 243

Query: 177 PKKRRMLMFSATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           PK+R+ ++FSAT SP +  L K   +     V V+  +E      +    ++     R  
Sbjct: 244 PKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVAPSDKRLL 303

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +   L+ +  K  +VF S+  SV    ++L       +++ G+  QQ+R+         
Sbjct: 304 LLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQA 363

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVFVIPQNM 352
              + + TDVAARG+D+P ++ ++  + +  P   +HR GRT R     G ++ V+    
Sbjct: 364 ETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNGSGKALLVLRPEE 423

Query: 353 QRRAERLFREANVSV-VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                R  + A V++  +E + S  A  +   + ++    +L+    +  K        H
Sbjct: 424 LGFL-RYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEAYKCYLRAYDSH 482

Query: 412 DPEKI 416
             + I
Sbjct: 483 SLKDI 487


>gi|255524804|ref|ZP_05391754.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296188659|ref|ZP_06857047.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
 gi|255511471|gb|EET87761.1| DEAD/DEAH box helicase domain protein [Clostridium carboxidivorans
           P7]
 gi|296046923|gb|EFG86369.1| DEAD/DEAH box helicase [Clostridium carboxidivorans P7]
          Length = 382

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 186/385 (48%), Gaps = 11/385 (2%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            +F+ +   + I E L + G    T +Q   +   +  KD++  A+TGSGKT+A+   + 
Sbjct: 4   TLFKELGINEKITEGLKKEGIEYATEIQVEAIPQAILNKDIVGEAETGSGKTLAYLAPIF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV---VVAVCIGGVSVHR 116
             +       + + A  A  + PT ELA+QV   ++ L   + +     A+        +
Sbjct: 64  QNID------TNSKAVQAFILTPTHELAIQVNDVIKTLAEDSEIPVKSAAIIGNINIKKQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
                 N  HIVVG+ GR+   I+ K +    +K +V+DEAD++LD    +D++ I+ ++
Sbjct: 118 IENLKNNKPHIVVGSTGRILQLIKLKKMKAHMIKTIVVDEADKLLDKNNVEDVKAIIKTT 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            K R+++ FSATI      +AK   K+   +    +   + +I++        D+   + 
Sbjct: 178 LKDRQLMFFSATIDERTLDVAKTLMKEYEVIRTQGKTSMNENIEHMCFKCEQRDKILILR 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +      K AIVF +    +   T+ L  H  +  ++ G   ++ R  AL+  + G+  
Sbjct: 238 KVFHILNPKKAIVFVNKPDEIEVLTEKLNYHGIKSESIYGTADKEVRKRALEDFKAGKIN 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           + +A+D+AARG+D+ D+E +   ++  + +N LHR+GRT RAG+ G S+ +     Q   
Sbjct: 298 LLVASDIAARGLDIQDVECIFSYDIPEDTDNYLHRAGRTARAGKAGKSICIFTDREQSLI 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRER 381
           ++  +  N+ +  +     + I  R
Sbjct: 358 KQYEKTFNIKINLKDMYKGKIIERR 382


>gi|294889264|ref|XP_002772733.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
 gi|239877266|gb|EER04549.1| ATP-dependent RNA helicase DED1, putative [Perkinsus marinus ATCC
           50983]
          Length = 622

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/372 (28%), Positives = 174/372 (46%), Gaps = 32/372 (8%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E +   G+   T VQ+  +      +D++  AQTGSGKT A+ +     +LA+    +
Sbjct: 218 IVENIKRCGFDRPTPVQKYSIPTLTTRRDLMSCAQTGSGKTGAYLIPAIHNMLADGPPDA 277

Query: 71  PASA--------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
            +S         P+ L ++PTRELA Q+  E       TG+   V  GG  V  + R+L+
Sbjct: 278 TSSGDYGRRKAYPITLILSPTRELASQIHEEARKFCFNTGIRPVVVYGGADVRTQLRELE 337

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            G  I+V TPGRL D +    +++  +K ++ DEAD MLD+GF   I  I++        
Sbjct: 338 RGCDILVATPGRLSDLMERFRVSLCQIKMLIFDEADRMLDMGFEPQIRRIVEQEDMPSSR 397

Query: 183 L-----MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
                 MFSAT    I  LA+++ KD + + +      H  I      V  + +   +  
Sbjct: 398 DGRQSAMFSATFPREIQQLARDFLKDYIYLTVGRVGSTHGSIKQIMRYVDENSKLRDLYR 457

Query: 238 ILRYHGAKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           +L     +   +VF  T+        +L    +   ++ G+ SQ ER  AL+  + G   
Sbjct: 458 VLEEQTEEGLTLVFVETKRKADEIENMLRRDRYPATSIHGDRSQWEREEALKAFKSGELP 517

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG------------------RTGRA 338
           + +ATDVAARG+D+  + LVI+ +L +N ++ +HR G                   TGRA
Sbjct: 518 ILVATDVAARGLDISHVNLVINYDLPNNIDDYVHRIGSKMVTVLPLLEMEEVFSSGTGRA 577

Query: 339 GRKGMSVFVIPQ 350
           G  G ++  + +
Sbjct: 578 GNLGTAIAFVNE 589


>gi|156554090|ref|XP_001600475.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
          Length = 782

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/405 (24%), Positives = 187/405 (46%), Gaps = 11/405 (2%)

Query: 1   MKIFENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++P  +   + L +  Y++LT +Q   +   L+  D+L +A+TGSGKT+AF + +
Sbjct: 40  IQKFTDLPLSMQTLKGLKDSEYIDLTDIQRQSIGLALKGNDILGAAKTGSGKTLAFLIPV 99

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +   ++      AL I PTRELA Q+   L  +     +   + IGG  +H E+
Sbjct: 100 MEILYCKQ--WTRLDGLGALIITPTRELAYQIYETLRKVGRYHDISAGLIIGGKDLHFEK 157

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L     I+      L         +  ++K +VLDEAD  LD+GF   +  I+++ P 
Sbjct: 158 KRLDQCNIIICTPGRLLQHMDENPLFDCVNMKILVLDEADRCLDMGFEKTMNSIIENLPL 217

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--DYRAVLVALSDRDNAIV 236
           +R+ L+FSAT +  +  LA+   KD + +++       +        ++  L ++   + 
Sbjct: 218 ERQTLLFSATQTKTVKDLARLSLKDPLYISVHENAAHTTPEGLQQSYIVCELEEKLAMLW 277

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA--LQMMRDGR 294
           + +R H  +  IVF S+   V    +        V  LS   +  +       +     +
Sbjct: 278 SFIRNHLKQKIIVFFSSCKQVKYIFEAFCRMRPGVSLLSLYGTLHQLKRMSIYESFCKKQ 337

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
             V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G S+ V+  + ++
Sbjct: 338 HAVLFATDIAARGLDFPAVNWVVQMDCPEDVNAYIHRAGRTARFQSGGESLLVLLPSEEK 397

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQ 397
              +L +E  + +      P+     +R  + +L +D    +S Q
Sbjct: 398 IVHQL-KERKIPINMIKINPNKLQSPQRKLEALLARDVALKESAQ 441


>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
 gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
           neapolitanus c2]
          Length = 469

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/461 (29%), Positives = 210/461 (45%), Gaps = 3/461 (0%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN-D 67
             +  AL   GY + T +Q   +   L  +D+L +AQTG+GKT  F L L   L      
Sbjct: 10  PELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPLLQRLATTPVL 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
             +P     AL + PTRELA QV   ++    K  +   V  GGV+++ +R  LQ    I
Sbjct: 70  HPAPKHRIRALVLTPTRELASQVEESVKQYGQKLKLTSMVIFGGVNINPQRDRLQRKLDI 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           +V TPGRL DH+    +++  ++ +VLDEAD MLD+GF  DI+ +L   PK+R+ L+FSA
Sbjct: 130 LVATPGRLLDHVGQGNVDLGGVEILVLDEADRMLDMGFIRDIKRVLALLPKQRQNLLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T +P I T A+N   +  +V +A +      ++ R   V    +   +  ++        
Sbjct: 190 TFAPEIKTFAQNLLDNPAKVEVAPQVTTAERVEQRIYPVDRDAKKALLQQLIVDGNWNQV 249

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           +VF  T+   +R  + L +     +A+    SQ  R  AL   + G+ RV +ATD+AARG
Sbjct: 250 LVFTRTKHGANRLAEQLDKDGIPAMAIHSNKSQSAREKALGAFKAGKLRVLVATDIAARG 309

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+  L  V++ EL + PE+ +HR GRTGRAG  G +V ++  +  +    + R     +
Sbjct: 310 IDIDALPHVVNYELPNVPEDYVHRIGRTGRAGAGGEAVSLVCVDEHKLLADIERTIRQKL 369

Query: 368 VWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRAG 427
                P  E       +  L+ P      + D                 A       R G
Sbjct: 370 ERVIVPGFEPDPNARPE-PLRKPQAARQPRRDFPPRSAQGHGGQGHNAQAPRSAGSQRDG 428

Query: 428 LCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSS 467
                          RD  RD  +R+   G G R    G+ 
Sbjct: 429 QPRSAGSAAAGNRPQRDGGRDTGNRSRPAGSGQRRRPSGNV 469


>gi|145353253|ref|XP_001420934.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581170|gb|ABO99227.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 172/376 (45%), Gaps = 20/376 (5%)

Query: 4   FE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALAST 61
           FE ++  +I  A+ + G+   T +Q   L P  + + D++ +AQTGSGKT+AF L +   
Sbjct: 20  FEFDLHPLIMRAIQDCGFTTPTPIQRECLLPATKGRCDIIGAAQTGSGKTLAFALPILQR 79

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           LL++           AL +APTRELA+QV   +  +   T + V   +GG+S  ++ R L
Sbjct: 80  LLSQG-----IDVLRALIVAPTRELALQVCAMMRAVAVYTKIDVCPVVGGMSKEKQERLL 134

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLK---AVVLDEADEMLDLGFRDDIEFILDSSPK 178
                ++V TPGR+ D ++    +++ L      VLDEAD M++ G   ++  I+ + P+
Sbjct: 135 NRKPAVIVATPGRMWDTMQSGHEHLTELSALSFFVLDEADRMVERGHFSELTSIIQNIPQ 194

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             R+                   K         +    +     + L    D  ++++  
Sbjct: 195 PPRIKRPGGAAKLTSAVPFYGRVKMVDLTTKERKGGAVAKSIAESALECTEDDRDSLLYY 254

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM-------- 290
           L        IVF +  + + R   +L      V  L   + Q+ R  AL           
Sbjct: 255 LLSAHPGMTIVFVNAISCLRRVVALLKILRVPVEGLHAGMQQRARLKALDRFKAAAAAAD 314

Query: 291 --RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
                   V +ATDVAARG+D+  +ELVIH ++  + +  +HRSGRTGRA + G +V ++
Sbjct: 315 KGDRHAHSVLVATDVAARGLDVKGVELVIHYQIPLSADTYIHRSGRTGRADKLGAAVSLV 374

Query: 349 PQNMQRRAERLFREAN 364
               + R   L +  N
Sbjct: 375 TPKDRARYYSLLKSLN 390


>gi|114647104|ref|XP_001152105.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 [Pan
           troglodytes]
          Length = 796

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 215/539 (39%), Gaps = 45/539 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L  
Sbjct: 12  DGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKT 71

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L   
Sbjct: 72  H----SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHEN 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++
Sbjct: 128 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYH 242
           FSAT+   +   A+    + V + +  + + +  +     LV    +      +      
Sbjct: 188 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVR 247

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +VF +T+      T++L         +   L    R   L     G+    I TD
Sbjct: 248 PQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTD 307

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +AARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L   
Sbjct: 308 LAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLF 367

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAG 419
              S+                 R L++P  +  + G   ++   ++ + D      + A 
Sbjct: 368 LGRSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEAS 413

Query: 420 F-LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
             LR + R    A ++          +  +       VG G    F  SS F      ++
Sbjct: 414 LELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEE 466

Query: 478 KAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           + +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 467 ELQRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 512


>gi|118092589|ref|XP_421574.2| PREDICTED: similar to Gu protein [Gallus gallus]
          Length = 690

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 118/420 (28%), Positives = 189/420 (45%), Gaps = 20/420 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F N P        L  RG   L  VQ     P    KD++  A+TG+GKT +F + L   
Sbjct: 127 FSNFPLSPSTINLLKARGVKYLFPVQVKTFQPIYDGKDLIAQARTGTGKTFSFAIPLTEK 186

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +       +P  L + PTRELA+QV ++ + L  K    VA   GG     +   L
Sbjct: 187 LQSVSQDEKRGRSPKVLVLVPTRELAIQVAKDFKNLTRKLS--VACFYGGTPYKAQFDLL 244

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +NG  I+VGTPGR+ DHI+   L++S++K VVLDE D MLD+GF + +E IL  + KK  
Sbjct: 245 KNGIDILVGTPGRIKDHIQNSKLDLSNVKHVVLDEVDHMLDMGFAEQVEEILGFAYKKGS 304

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR----------AVLVALSDR 231
                  +  A                   +         R              +    
Sbjct: 305 ENSPQTLLFSATCPRWVYDVAKKYMKGEYEQVDLIGKKTQRTATTVEHLAIQCRSSQRAE 364

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +        IVFC T+   +      A          G++ Q++R   L+  R
Sbjct: 365 VLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQEAQSLH-GDIPQKQREVTLKGFR 423

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           +G   V IAT+VAARG+D+P+++LVI      + ++ +HRSGRTGRAGR G+ +    + 
Sbjct: 424 NGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICFYQRK 483

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRER---DAQRILQD--PLFLDSIQGDEKKMVDV 406
            +   +++ ++A ++      PS   I +    DA++ L    P  +D  +   +++++ 
Sbjct: 484 EEDLLKQVEQKAGITFRRIGVPSATDIIKASSDDAKKCLDAVPPSAIDYFRQSARELIEE 543


>gi|221130108|ref|XP_002159763.1| PREDICTED: similar to vasa-related protein CnVAS1, partial [Hydra
           magnipapillata]
          Length = 496

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/411 (24%), Positives = 168/411 (40%), Gaps = 41/411 (9%)

Query: 5   ENIPQVIG--EALSERG--------YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           E++P+ I   E + E          Y   T VQ++ +   +   D++V AQTGSGKT AF
Sbjct: 70  EDLPKPILSFEFIKELPPSIFDVQFYKKPTPVQKSAIPLMMEGLDLVVCAQTGSGKTAAF 129

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + + + +L++         P AL + PTRELA+Q+ R+   L  +T +      GG  V
Sbjct: 130 LIPIVAKVLSKPT----TEKPYALILTPTRELAIQIHRDAVQLTKETHIKCCCAYGGKHV 185

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174
                D++ G  +++ TPGR+    R     +S ++  VLDEAD +L   F +D+  + D
Sbjct: 186 RENINDIRAGCDLLIATPGRILHLCRSIKDLLSKVQTFVLDEADHILGNNFVNDLNELKD 245

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN--------------------- 213
             P  ++        S         Y  +      +                        
Sbjct: 246 ILPPIKKRQTVLVCASIPGQFEKAVYGPNICEYIKSDFKEVLKEFLKDEYIFVCVGRVGG 305

Query: 214 --RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQV 271
                +   ++        +    +        K  IVF  T+   +     L    FQV
Sbjct: 306 TVNFIAQSFFKVEPDTPKLKILTDILNKESKQNKKTIVFLETKEDAAAMAMFLCSCGFQV 365

Query: 272 VALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHR 331
                   Q +R  AL     G   + I T V+ARG+D+ +++ VI+ +L  +    L+R
Sbjct: 366 TVFHNNRCQNDREYALHQFNTGVKPIMICTSVSARGLDIVEVKTVINYDLPYDISTYLYR 425

Query: 332 SGRTGRAGRKGMSV-FVIPQNMQRRAERLFREANVSVVWEPAPS-VEAIRE 380
            GRTGRAG  G ++ F +       A  L +  N+S+  +  P  ++ I E
Sbjct: 426 IGRTGRAGHAGKAISFFVKGRDDGIARGLVK--NLSMSEQDVPEWLDDIAE 474


>gi|118482305|gb|ABK93079.1| unknown [Populus trichocarpa]
          Length = 428

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 177/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +   +
Sbjct: 54  LKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTS 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +       +AL +  TRELA Q+  E E               G    +  +D      
Sbjct: 114 GQV------IALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLGAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  +++VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVDIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
 gi|160380650|sp|A7F4L5|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
 gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 801

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 102/371 (27%), Positives = 181/371 (48%), Gaps = 9/371 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F++  + + I   L+  G+   T +Q   +   L  KDV+  A TGSGKT AF + + 
Sbjct: 268 STFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVL 327

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +   +       + PTRELA+Q       L + T +   + +GG+S+  +  
Sbjct: 328 ERLLYRPKKVPTSR---VAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEA 384

Query: 120 DLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           +L+    +++ TPGR  DH+R      +  L+ +VLDEAD ML+ GF D++  IL + PK
Sbjct: 385 ELRLRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPK 444

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD---RDNAI 235
            R+ ++FSAT+S ++  L +      VR+ + S+      +    + +       R   +
Sbjct: 445 SRQTMLFSATMSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYL 504

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + +         IVF   +    R   +      +   L G +SQ++R  +++  RDG+A
Sbjct: 505 LYLCANVYTDRVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKA 564

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+A+RG+D+  ++ VI+ E   + +  LHR GRT RAGR G +  +  +  ++ 
Sbjct: 565 SFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPDRKV 624

Query: 356 AERLFREANVS 366
            +   + +   
Sbjct: 625 VKAAVKASRTQ 635


>gi|146077246|ref|XP_001463224.1| ATP-dependent DEAD/H RNA helicase [Leishmania infantum JPCM5]
 gi|134067308|emb|CAM65578.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania infantum
           JPCM5]
          Length = 485

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 6/338 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 127 MLEFSDLVAPDAIHQAFMDAGFQKPTPIQSVAWPVLLNSRDIVGVAKTGSGKTMAFMIPA 186

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 187 ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQ 245

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 246 QRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 305

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 306 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKME 365

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 366 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 425

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
            + +ATDVAARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 426 AILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIG 463


>gi|71019363|ref|XP_759912.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
 gi|74701371|sp|Q4P7Z8|DBP5_USTMA RecName: Full=ATP-dependent RNA helicase DBP5
 gi|46099567|gb|EAK84800.1| hypothetical protein UM03765.1 [Ustilago maydis 521]
          Length = 456

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 178/400 (44%), Gaps = 23/400 (5%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGLA 57
           K FE   + + + + +    Y   + +QE  L   L+   K+++  +Q+G+GKT AF L 
Sbjct: 64  KSFEALGLHENLLKGIYAMKYQKPSKIQEKALPLLLQNPPKNMIGQSQSGTGKTAAFILT 123

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + S +  +  +      P A+A+AP+RELA Q+      +   T V   +C+        
Sbjct: 124 MLSRIDYDLQK------PQAIALAPSRELARQIMDVARTMSKFTNVTTCLCLP----DEV 173

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILDS 175
           +R  +  A +++GTPG+  D I+ KG++ + +K  VLDEAD MLD     +  I      
Sbjct: 174 KRGEKITAQLIIGTPGKTFDMIKSKGIDTAAIKVFVLDEADNMLDQQSLGEQSIRVKNTM 233

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +   +       +             E        +         +   +
Sbjct: 234 PKSCQLVLFSATFPTNVYDFAVRIAPGANEIRLKQEELSVEGIKQFYMDCKDEDHKYEVL 293

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           V +        +I+FC+ R +  R  + + +   +V +L G L   +R   +   RDG++
Sbjct: 294 VELYNLLTIGQSIIFCAKRETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKS 353

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V I+T+V ARGID+  + LVI+ ++       ++ E  LHR GRTGR GRKG+S+  + 
Sbjct: 354 KVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVH 413

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
            Q      +++ +     +       +E +     + + Q
Sbjct: 414 DQQSWSYMDQIEKALKCQITRVATNDLEEMEYTIKEALKQ 453


>gi|170039659|ref|XP_001847645.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
 gi|167863269|gb|EDS26652.1| ATP-dependent RNA helicase DBP4 [Culex quinquefasciatus]
          Length = 735

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 172/370 (46%), Gaps = 8/370 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +   + L++  Y   T++Q   + P L+ KD+L +A+TGSGKT+AF + +   
Sbjct: 67  FSDFPLSKKTVQGLAQGQYRVPTAIQRQSILPALQGKDILAAAKTGSGKTLAFLIPVFEK 126

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L    +R++      AL I PTRELA+Q+   +  +         + IGG ++  E+  L
Sbjct: 127 LYT--NRWTRLDGLGALIITPTRELALQIFETVAKIGKNHDFTTGLIIGGQNLKFEKSRL 184

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                I+      L         + ++LK +VLDEAD  LD+GF+  +  I+++ P  R+
Sbjct: 185 HQLNIIICTPGRLLQHMDTNPLFDCTNLKVLVLDEADRCLDMGFQTAMNAIIENLPTTRQ 244

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++             +  +   E    S +    V V LS++   + + L
Sbjct: 245 TLLFSATQTKSVKDLARLNLTDPVYIAPHEKEEYTTPSRLQQNYVTVELSEKLTMLWSFL 304

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRARV 297
           + H  +  IVF +T   V    ++  +    ++   L G ++Q++R+             
Sbjct: 305 KSHSKQKIIVFFATCKQVRYHYEIFRKLRPSILLLPLYGGMNQEKRNKIYAEFCSRSNVC 364

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D P +  V+  +   +    +HR+GRT R    G S+ V+    +    
Sbjct: 365 LMATDVASRGLDFPKVNWVVQLDCPEDATQYIHRAGRTARLNTAGESLLVLLPQEEEGVV 424

Query: 358 RLFREANVSV 367
            +     V +
Sbjct: 425 AMLGRTKVPI 434


>gi|195438968|ref|XP_002067403.1| GK16405 [Drosophila willistoni]
 gi|194163488|gb|EDW78389.1| GK16405 [Drosophila willistoni]
          Length = 846

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 169/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +KIF++ P  Q   +AL+E  Y N T VQ   + P L  KDVL +A TGSGKT+AF + +
Sbjct: 72  IKIFKHFPLSQKTQKALAEFKYTNPTPVQRESIGPALLGKDVLGAAVTGSGKTLAFLIPV 131

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    +++S +    A+ I+PTRELA Q+   L+ +         + IGG ++  ER
Sbjct: 132 LEHLFI--NKWSRSDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFER 189

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++      L         N S ++ +VLDEAD  LD+GF+  +  I+++ P 
Sbjct: 190 TRMDQCNILICTPGRLLQHMDENPLFNTSSMEMLVLDEADRCLDMGFQKTLNSIIENFPP 249

Query: 179 KRRMLMFSATISPAITT--------------------LAKNYQKDAVRVNIASENRQHSD 218
            R+ L+FSAT +  +                                     +  +    
Sbjct: 250 DRQTLLFSATQTNTVQDLARLNLKDPVYVGYGNGEGTPTVTSSSSISVTESRAVLKVPEL 309

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           +    V++ L D+   + + ++ H  +  IVF S+        ++  +    V  L+   
Sbjct: 310 LQQSYVVLKLEDKLTMLWSFIKNHLKQKIIVFVSSCKQAKYLYEIFCKLRPGVGLLALYG 369

Query: 279 SQQERSN--ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
           +  +       +        V  ATDVA+RG+D P +  V+  +   +    +HR+GR+ 
Sbjct: 370 TLHQDRRIAIYEDFLRKSHVVMFATDVASRGLDFPSVNWVVQLDCPEDVSQYIHRAGRSA 429

Query: 337 RAGRKGMSVF-VIPQNMQRRAERLFREANVSV 367
           R   +G  +  + P   +     L  + N+ +
Sbjct: 430 RNKSRGECLLVLTPSEEEYMIGALKEQLNLDI 461


>gi|195048518|ref|XP_001992542.1| GH24149 [Drosophila grimshawi]
 gi|193893383|gb|EDV92249.1| GH24149 [Drosophila grimshawi]
          Length = 798

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 111/506 (21%), Positives = 204/506 (40%), Gaps = 31/506 (6%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F   P  Q   +AL+E  ++  T VQ   + P L+ KDVL +A TGSGKT+AF + +
Sbjct: 62  IKTFAQFPLSQKTQKALAESKFITATEVQRQSIGPALQGKDVLGAAITGSGKTLAFLIPV 121

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L    +++S +    A+ I+PTRELA Q+   L+ +         + IGG ++  ER
Sbjct: 122 LEHLYM--NKWSRSDGVGAIIISPTRELAYQIFETLKKVGKHHDFSAGLIIGGKNLKFER 179

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             +     ++      L         N S ++ +VLDEAD  LD+GF+  +  I+++ P 
Sbjct: 180 TRMDQCNILICTPGRLLQHMDENPLFNTSTMEMLVLDEADRCLDMGFQKTLNAIIENFPP 239

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI------------DYRAVLV 226
            R+ L+FSAT +  +  LA+   +  V V   + N   +                  V++
Sbjct: 240 DRQTLLFSATQTNTLEDLARLNLQQPVYVGYGTANSTTTPASNAAVLALPELLQQSYVVL 299

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN- 285
            L ++   + + ++ H  +  IVF ++        ++  +    V  L+   +  +    
Sbjct: 300 PLEEKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGVGLLALYGTLHQDKRI 359

Query: 286 -ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
              +        V  ATDVA+RG+D P +  V+  +   +    +HR+GR+ R    G  
Sbjct: 360 AIYEEFLRKSQVVMFATDVASRGLDFPAVNWVLQLDCPEDVSQYIHRAGRSARNKSHGEC 419

Query: 345 VFV-IPQNMQRRAERLFREANVSV---------VWEPAPSVEAIRERDAQ-RILQDPLFL 393
           + V  P   +     L  + NV +         ++ P   +EA   +  + R      FL
Sbjct: 420 LLVMTPNEEEHMIGALREQLNVEIKSVHIDPKKLFSPRVKIEAFLAQFPELRASAQRAFL 479

Query: 394 DSIQGDEKKMVDVLLA--KHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSR 451
             ++         L      D +  A          +   E++        +       +
Sbjct: 480 AYLKSVFLMRNKRLFNVLSLDLDAYAQSLGLAVTPRVPFIEKLKWRQKQQEKKDDLPAQQ 539

Query: 452 AFKVGGGSRDNFKGSSWFSLSVGSKQ 477
                GG+ D+        +++  + 
Sbjct: 540 TTTSFGGASDHSDVEDDDFINIKRRD 565


>gi|47221681|emb|CAG10153.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 359

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/359 (27%), Positives = 173/359 (48%), Gaps = 9/359 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L   G+   + +Q+  + P ++  DV   +Q+G+GKT  + +++   +            
Sbjct: 3   LRGYGFEKPSVIQQRAIIPCIKGFDV--KSQSGTGKTATYVISVLQRINVMKKE------ 54

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAHIVVGTPG 133
             A+ +APTRELA Q+ + +  L    GV   A   G               HI+VGTPG
Sbjct: 55  TQAIILAPTRELAYQIQKVVLSLGDYMGVRCHACIGGTNIHEDIENLKSTNPHIMVGTPG 114

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
            + D +  + ++   ++ +VLDEAD+ML  GF+D I  I    P   + ++ SAT+ P +
Sbjct: 115 HVFDMLGRRAVSSKAIRMLVLDEADQMLGHGFKDQIHEIFCKLPTNIQAILLSATMPPDV 174

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             + K + ++ V + +  E      I    +      +  ++  +        A++F +T
Sbjct: 175 LEVTKRFMQNPVNILVKKEELTVEGIQQFYITETEEKKLKSLCRLYETLTITQAVIFVNT 234

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           R      T+ L    F V  L  E+ Q ER   ++  R G +RV I TD+ ARGI++   
Sbjct: 235 RRKAEWLTQELTSKDFTVSVLHSEMGQSERDTTMKEFRSGSSRVFITTDLLARGINVQHA 294

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
            LVI+ +LS++ EN +HR GR+GR GRKG+++ ++ +  Q    ++    +  +   PA
Sbjct: 295 SLVINFDLSTSLENYIHRIGRSGRFGRKGVAINMVTEETQHMLTKIQNFYDTKIEELPA 353


>gi|322488402|emb|CBZ23648.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 415

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 6/338 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +   + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 1   MLEFSDLVAPDAIHQGFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPA 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 61  ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQ 119

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 120 QRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 179

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 180 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKME 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 240 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 299

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
            + +ATDVAARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 300 AILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIG 337


>gi|313238237|emb|CBY13329.1| unnamed protein product [Oikopleura dioica]
          Length = 598

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 179/365 (49%), Gaps = 7/365 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLR-EKDVLVSAQTGSGKTVAFGLALASTLLA 64
           N+   +  A+   G+ + T +Q   +   L  +K +L +A+TGSGKT+A+GL +   ++ 
Sbjct: 146 NLDVALLRAIDSLGFKSPTDIQRQCIPKGLNSKKTILGAAETGSGKTIAYGLPILQKIIG 205

Query: 65  END-RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQ 122
             D        P AL + PTRELA+QV   +  +   T V     +GG++  +++R   +
Sbjct: 206 YLDFSEEKTVGPQALILCPTRELAMQVHDSIRLVSKFTSVKTTAIVGGMAAEKQQRVLSK 265

Query: 123 NGAHIVVGTPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
               I+V TPGR  +     +    N+  +K  V+DEAD M + G   +++ I+ +  ++
Sbjct: 266 IRPEIIVATPGRFWELRETGQEYLQNLRSIKYFVVDEADRMAEKGHFAELDKIVGTLSRE 325

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSAT++       +  +         S+ ++      +  ++   D+D   +  +
Sbjct: 326 SQKFVFSATLTLTHVNSDRMDRMKIKTETTKSKIKKLMKAIVKVSILTEKDKDLW-LYFM 384

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                  +IVFC++   V R   +L      V +L   L Q++R   L   R     + +
Sbjct: 385 LKKQEGRSIVFCNSITGVLRLRGLLDTLKLPVRSLHANLKQKQRLKNLDAFRKSTDGILL 444

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+D+P+++ +IH +  +  E  +HRSGR GRAGR G +V ++  +  +  +++
Sbjct: 445 ATDVAARGLDIPNVDQIIHFQFPNAAETYVHRSGRCGRAGRSGTAVTLLKDSDVKNYKKV 504

Query: 360 FREAN 364
                
Sbjct: 505 LHTLK 509


>gi|49119283|gb|AAH73332.1| LOC398189 protein [Xenopus laevis]
          Length = 727

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 174/414 (42%), Gaps = 15/414 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  + 
Sbjct: 154 LSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQ 213

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +   AP  + + PTRELA+Q+  E+  +  K    V+   GG    ++   +++G  
Sbjct: 214 QPLARGRAPRVIILTPTRELAIQITNEIRSITKKL--KVSCFYGGTPYQQQVFAIKDGID 271

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K        
Sbjct: 272 FLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPEENPQ 331

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----------IV 236
             +  A                   +         +A                      +
Sbjct: 332 TLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDL 391

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+FC ++                  +L G+L Q+ER   L+  R G   
Sbjct: 392 VQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFE 451

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IAT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +     +   
Sbjct: 452 VLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWERHYL 511

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R   ++      PS+  + +  +   ++    LD++  D  +       +
Sbjct: 512 RNVERSTGITFKRVGVPSLLNVAKSSSADAIKS---LDTVPADVIEHFKEYAQE 562


>gi|147899364|ref|NP_001082035.1| RNA helicase II/Gu [Xenopus laevis]
 gi|16975508|gb|AAG22819.2|AF302423_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 759

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 174/414 (42%), Gaps = 15/414 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   + L  +G   L  +Q    +     KDV+V A+TG+GKT +F + L   L  + 
Sbjct: 186 LSKETIKNLQAKGVSYLFPIQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQ 245

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +   AP  + + PTRELA+Q+  E+  +  K    V+   GG    ++   +++G  
Sbjct: 246 QPLARGRAPRVIILTPTRELAIQITNEIRSITKKL--KVSCFYGGTPYQQQVFAIKDGID 303

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
            +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K        
Sbjct: 304 FLVGTPGRVRDLVQNYRLDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPEENPQ 363

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA----------IV 236
             +  A                   +         +A                      +
Sbjct: 364 TLLFSATCPDWMYNMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDL 423

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
             +        I+FC ++                  +L G+L Q+ER   L+  R G   
Sbjct: 424 VQVYSGSHGKTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFE 483

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V IAT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +     +   
Sbjct: 484 VLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPWERHYL 543

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
             + R   ++      PS+  + +  +   ++    LD++  D  +       +
Sbjct: 544 RNVERSTGITFKRVGVPSLLNVAKSSSADAIKS---LDTVPADVIEHFKEYAQE 594


>gi|300798295|ref|NP_001179318.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Bos taurus]
 gi|297484475|ref|XP_002694322.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos
           taurus]
 gi|296478913|gb|DAA21028.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59-like [Bos taurus]
          Length = 620

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 104/405 (25%), Positives = 188/405 (46%), Gaps = 24/405 (5%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P+ +   L   GY   T +Q  ++   L  +DVL SA TGSGKT AF L +   
Sbjct: 206 FEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILR 265

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVHRERRD 120
            L++      + +P  L + PTRELA+Q+ R+ + L +       A+ +GG+    +R  
Sbjct: 266 ALSQ------SKSPSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHR 319

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL D I+ + + +  +K VV+DEAD ML +GF+  +  +L+  P   
Sbjct: 320 LRQRIQVIIATPGRLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC 379

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  ++  LA    +D V +     N     +          A   +   I+N
Sbjct: 380 QTVLASATIPASVEQLACQLLRDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILN 439

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      +  ++  + +Q ER N L+ + +G   V
Sbjct: 440 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDV 499

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  ++LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N +R   
Sbjct: 500 VVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFW 559

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKK 402
            + +    +    P             ++L  P   D  + +++K
Sbjct: 560 DIAKRVKPTGSLLPP------------QLLNSPYLHDQKRKEQQK 592


>gi|121607326|ref|YP_995133.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551966|gb|ABM56115.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
           EF01-2]
          Length = 609

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 189/436 (43%), Gaps = 53/436 (12%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-REK------DVLVSAQTGSGKTVAFGLALA 59
           +   +  A+++ GY   T VQ   +   +          D++VS+QTGSGKT A+ L L 
Sbjct: 83  LAPELVRAVADLGYTGPTIVQRKAIPLAMGAGHGATRFIDLMVSSQTGSGKTAAYLLPLL 142

Query: 60  STLLAENDRFS------------------------------------PASAPLALAIAPT 83
            TL+ +  +                                       A+ P AL + PT
Sbjct: 143 HTLIGQQAQVQAQERAALERAAADAATRDAPAPKRPKRKDPMHTRHFKAATPGALILCPT 202

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 203 RELAQQVAHDAIDLARHCRGLRVANVVGGMPYQMQIAKLQNASLVVATPGRLLDLQRSMQ 262

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITT-----LAK 198
           + +  ++ +V+DEAD MLDLGF DD+  I   + ++++ +MFSAT +P I       +  
Sbjct: 263 IKLDKVQFLVVDEADRMLDLGFSDDLAEINQLTSQRQQTMMFSATFAPRIQQLALRVMHD 322

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                      + + +  +             +   + + LR      AIVF ST+    
Sbjct: 323 GGSSVQKLTIDSPQEKHANIRQMLYWADNAQHKRKLLDHWLRDTQINQAIVFASTQVECD 382

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G L+Q  R+  L  +RDG+ ++ +ATDVAARGID+P +  V +
Sbjct: 383 ALAGELQQAGFSAVALHGALNQGLRNRRLTALRDGQVQILVATDVAARGIDVPTITHVFN 442

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
             L    E+  HR GRTGRAGR G+++       +R+   +   +  S   E  P +E  
Sbjct: 443 FGLPMKAEDYTHRIGRTGRAGRDGLAISFAEFRDRRKIHDIESFSRQSFKAEVIPGLEP- 501

Query: 379 RERDAQRILQDPLFLD 394
               AQR  Q P   D
Sbjct: 502 ----AQRPPQAPRSAD 513


>gi|324508397|gb|ADY43545.1| ATP-dependent RNA helicase pitchoune [Ascaris suum]
          Length = 574

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/429 (24%), Positives = 192/429 (44%), Gaps = 19/429 (4%)

Query: 4   FENIPQVIGEA----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F+++  V+ EA    + E G+  +T +Q   + P L  +D+L +A+TGSGKT+AF +   
Sbjct: 93  FDSLSDVVSEATLAAVREMGFTQMTKIQAKCIRPLLEGRDILGAAKTGSGKTLAFLIPAV 152

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRER 118
             L+    +    +  + +  +PTREL++Q    L E L     +   + +GG +   E 
Sbjct: 153 ELLVKLEWKVRNGTGVIVI--SPTRELSMQTYGVLSELLEKHPAITHGLVMGGANRQAEV 210

Query: 119 RDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           + L  G + +V TPGRL DH        + +LK +++DEAD +LD+GF  +++ IL   P
Sbjct: 211 QKLVKGVNFLVATPGRLLDHLQNTDDFVVRNLKCLIVDEADRILDIGFEIEMQHILRILP 270

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI--------DYRAVLVALS 229
           KKR+ ++FSAT +  +  L K                   +             V+    
Sbjct: 271 KKRQTMLFSATQTAKVNELIKAALHSDPLRIGIDPKDAPDEDGSATVSGLQQGYVVCPSE 330

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            R   +   L+ +  K  +VF S+  SV    ++       V  + G+  QQ+R+     
Sbjct: 331 KRLLLLFTFLKKNRNKKVMVFFSSCNSVKFHHELFNYIDISVQCIHGKQKQQKRTCTFFS 390

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVI 348
               +  +   TDVAARG+D+P ++ ++  +    P   +HR GRT R A   G ++ ++
Sbjct: 391 FCQAKTGILFCTDVAARGLDIPQVDWIVQYDPPDEPREYIHRVGRTARGAEGTGHALLLL 450

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVE-AIRERDAQRILQDPLFLDSIQGDEKKMVDVL 407
                    R  ++A V +        + A  +   +++++   +L+    +  K     
Sbjct: 451 RPEELGFL-RYLKQARVVLNEFEFSWNKVANIQPQLEKLIEQNYYLNKSAKEAYKCYVRA 509

Query: 408 LAKHDPEKI 416
              H  + I
Sbjct: 510 YDSHSLKSI 518


>gi|261335430|emb|CBH18424.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 556

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 19/403 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   L ER +   T +Q   +   ++ +DVL  A TGSGKTVAF + + + L   
Sbjct: 137 SLDECLISNLFERNHRIPTPIQMQTIPCLVQGRDVLACAPTGSGKTVAFLIPMFARL--- 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +    +   AL I PT ELA Q+ RE  +L       +           +        
Sbjct: 194 -GKPDRDAGVRALIITPTMELAEQIEREAFFLLKGKRWKLV----------QHGQTTRNK 242

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD----LGFRDDIEFILDSSPKKRR 181
            I + TPGR+   +  K +++S+++ +V DE D + D         DI     +  +K  
Sbjct: 243 DIFITTPGRVSTLLERKLVDLSNIQYLVFDEGDRLWDSSTDNLRVMDIVLTACTYKEKVV 302

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
            L  +                D VR+ ++   + + ++    V       +  AI NI+R
Sbjct: 303 ALFTATLSEKIEAAARSVMGPDPVRIIVSGRAKANKNVKQELVFCGNELGKVVAIRNIVR 362

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  +        + +     ++  ++ +++ +ER   +   R G+  V + 
Sbjct: 363 EGVTPPVLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVT 422

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T++ +RGID  ++  VI+ ++ +  E+ +HR GR GRAG+ G ++    ++ + R   + 
Sbjct: 423 TELLSRGIDFKNVGTVINFDIPTTVESYIHRVGRCGRAGKTGKAITFFTEDDKHRIPPIA 482

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           R    S        +E    R  +R LQ       I    K+M
Sbjct: 483 RVMKESGSPIEDWMLEIKTHRSVRRRLQRTTPHRMIVSTRKRM 525


>gi|109092953|ref|XP_001085678.1| PREDICTED: eukaryotic initiation factor 4A-I-like isoform 7 [Macaca
           mulatta]
          Length = 406

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI++GTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIMGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGICQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +T+  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTQRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|242020630|ref|XP_002430755.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
 gi|212515952|gb|EEB18017.1| ATP-dependent RNA helicase DDX19B, putative [Pediculus humanus
           corporis]
          Length = 480

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 169/394 (42%), Gaps = 22/394 (5%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGL 56
           +K FE +     + + L   G+   + +QE  L   L +   +++  +Q+G+GKT AF L
Sbjct: 92  VKSFEELHLKPELLKGLYTMGFNTPSKIQETTLPSLLADPPINLIAQSQSGTGKTAAFTL 151

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +       +  + P  L ++PT ELA+Q G+    + A    +  +    V    
Sbjct: 152 AMLSRVD------ATKNYPQVLCLSPTYELAIQTGQVASKMGAFCPDI--LIRYAVRGEE 203

Query: 117 ERRDLQNGAHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
             R  +   HI++GTPG++ D     +   ++   +  +   +            +    
Sbjct: 204 VPRGTKLKEHIIIGTPGKVLDWGLKYKFFDMSKIKVFVLDEADLMISTQGHQDQVLRIRK 263

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
               K + ML  +      +      +    +      E    +   Y  +  +  D+  
Sbjct: 264 FLGEKCQMMLFSATYEQEVVEFAEGIFLNPMILSLKREEESLDNIKQYYVMCNSEKDKYQ 323

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           AI+NI        A++FC TR + S   + +++    V  LSGEL+ ++R   L   RDG
Sbjct: 324 AIINIYGVVTIGQAMIFCQTRKTASWLAEHMSKDGHAVAMLSGELTVEQRIAVLNRFRDG 383

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNP------ENLLHRSGRTGRAGRKGMSVFV 347
           + +V I T+V +RGID+  + +V++ +L  +P      E  LHR GRTGR G+ G+++ +
Sbjct: 384 KEKVLITTNVLSRGIDIEQVTIVVNFDLPRDPNGKPDYETYLHRIGRTGRFGKAGLAINL 443

Query: 348 I-PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
           I  Q+     + +       +        + I +
Sbjct: 444 IQDQSDMEVLKSIENHFQKKITLLDTEDADEIEK 477


>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
 gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
          Length = 892

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 6/357 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + Q++ + +   G+ N T +Q++ +    + +DV+  A+TGSGKTV++   L   L    
Sbjct: 45  LSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFERLDY-- 102

Query: 67  DRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + S      A+ I PTREL +QV + + +++   + +   +  GG S+  +   L    
Sbjct: 103 -KHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLSANP 161

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I++ TPGRL   I   GL++  ++ VV DEAD + ++G  + +  I+   P  R+ L+F
Sbjct: 162 DIIIATPGRLLHIILETGLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQTLLF 221

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHG 243
           SAT+  A+   +K        + + SE +   +I    + V  +++  A++         
Sbjct: 222 SATLPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNSVISH 281

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
            +  I+F  TR     F  +   +  +   + G + QQ R   L   R+G A + + TDV
Sbjct: 282 RETTIIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILLVTDV 341

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           AARGID+PD+  VI+      P+  +HR GR GRAG+ G +  +I  +       L 
Sbjct: 342 AARGIDIPDVNNVINYNFPGKPKLFVHRVGRVGRAGKVGTAYSLIAPDEVPFFLDLE 398


>gi|268565311|ref|XP_002639404.1| Hypothetical protein CBG03992 [Caenorhabditis briggsae]
 gi|187036185|emb|CAP24791.1| hypothetical protein CBG_03992 [Caenorhabditis briggsae AF16]
          Length = 750

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 110/441 (24%), Positives = 195/441 (44%), Gaps = 15/441 (3%)

Query: 4   FENIPQVI--GEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+ P      E L E  YV  T +Q   +   L   DV+ +A+TGSGKT+A  + +   
Sbjct: 78  FEDFPLSWRTLEGLKENEYVKPTEIQRDTIAHSLTGADVVGAAKTGSGKTLALVIPILEA 137

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     ++SP     AL I+PTRELA+Q    +  +    G    + IGG  V  ER  +
Sbjct: 138 LW--RVKWSPEYGLGALVISPTRELALQTFSTINAVGKHHGFSCGLVIGGSEVAFERNRI 195

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                IV      L      + +N   L+ +VLDEAD MLD+GF   +  I+++ P +R+
Sbjct: 196 SGINIIVCTPGRLLQHMDENEQMNCDSLQILVLDEADRMLDMGFSKQLNSIINNLPAERQ 255

Query: 182 MLMFSATISPAITTLAKNYQKDAVRV--NIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT +  +  L++    D V V  +  S      ++    V+V    + N + + +
Sbjct: 256 TLLFSATQTRNVKDLSRVCTNDPVFVSVHENSAAATPDNLKQSYVVVEEEIKINTLWSFI 315

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL--SGELSQQERSNALQMMRDGRARV 297
             H  K ++VF S+       T+V ++    +  +   G ++Q++R        + +A V
Sbjct: 316 EAHKKKKSLVFVSSCKQARFLTEVFSQLRPGLPVMGLWGTMNQKKRIETFTKYDESKAAV 375

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATDVA+RG+D   ++ VI  +  +  ++ +HR GR+ R    G S+ ++  + +    
Sbjct: 376 LIATDVASRGLDFERIDWVIQVDCPAQIDDYIHRVGRSARMEESGNSLLMVTSSQEEAMI 435

Query: 358 RLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE- 414
               + ++ +        ++  +R +    + +     +  Q      +  +    D + 
Sbjct: 436 SKLAKHSIPIEELKIHPDAMTDVRLKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKKI 495

Query: 415 ----KIAAGFLRIHRAGLCAP 431
                I A  L      +  P
Sbjct: 496 FNVNTIDAAALADSFGLVSVP 516


>gi|282916828|ref|ZP_06324586.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283770634|ref|ZP_06343526.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
 gi|282319315|gb|EFB49667.1| helicase [Staphylococcus aureus subsp. aureus D139]
 gi|283460781|gb|EFC07871.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus subsp. aureus H19]
          Length = 448

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 205/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
             +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  FDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  IVFC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIVFCNSRDNANDLARSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|149699345|ref|XP_001501014.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 479

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSQVEPAN------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKVSEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|296478242|gb|DAA20357.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 166/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------RHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|195970701|gb|ACG60739.1| probable DEAD-box RNA helicase [Streptomyces flavoviridis]
          Length = 498

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/365 (32%), Positives = 185/365 (50%), Gaps = 7/365 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  AL + G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 71  FADLDMPGELLAALGKDGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +    PL L + PTRELA QV   L        + +A  +GG+S+ R+   L
Sbjct: 131 ---TAGRRAEPRQPLGLVLVPTRELAQQVTDALTPYARSVKLRLATVVGGMSIGRQASAL 187

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + GA IVV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD    + +
Sbjct: 188 RGGAEIVVATPGRLKDLIDRGDCRLNQISITVLDEADQMADMGFLPQVTALLDQVRPEGQ 247

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 248 RMLFSATLDRNVDLLVRRYLTDPVVHSVDPSAGAVTTMEHHVLHVHGADKHA--ATTEIA 305

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  T+ +V R T+ L     +  AL G  SQ +R+  L   + G   V +AT
Sbjct: 306 ARDGRVIMFLDTKHAVDRLTRDLLNSGVRAAALHGGKSQPQRTRTLTQFKTGHVTVLVAT 365

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI + +L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  + +R   RL  
Sbjct: 366 NVAARGIHVDNLDLVVNVDPPTDHKDYLHRGGRTARAGESGSVVTLVTPSQRRGMVRLMS 425

Query: 362 EANVS 366
            A + 
Sbjct: 426 NAGIR 430


>gi|242022378|ref|XP_002431617.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
 gi|212516925|gb|EEB18879.1| pre-mRNA-splicing ATP-dependent RNA helicase prp28, putative
           [Pediculus humanus corporis]
          Length = 788

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 186/381 (48%), Gaps = 28/381 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           IPQ I + +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L     +L 
Sbjct: 367 IPQEILDIIERVGYTEATPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLIMWIQSLP 426

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P A+ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 427 KIQRMEDADQGPYAIILAPTRELAQQIEEETNKFGNPLGIRTVVVVGGLSREEQGFRLRL 486

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 487 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 546

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 547 DTEEAEDDKFLLANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSVGKPVER 606

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           ++    +V+  D+   +  +L        I+F + +       + L +  +    L G  
Sbjct: 607 VEQIVHIVSEQDKRRKLCELLARGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHGGK 666

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  +++G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTGRA
Sbjct: 667 GQEQREYALSSLKNGTKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRA 726

Query: 339 GRKGMSVFVIPQNMQRRAERL 359
           G+ G++V    ++       L
Sbjct: 727 GKHGIAVSFCTKDDSGLFYDL 747


>gi|51593782|gb|AAH80729.1| Ddx10 protein [Mus musculus]
          Length = 744

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 188/413 (45%), Gaps = 8/413 (1%)

Query: 8   PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
           P+   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +   L     
Sbjct: 12  PKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALY--RL 69

Query: 68  RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
           +++       L I+PTRELA Q    L  +         + IGG  +  E   + N   +
Sbjct: 70  QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINIL 129

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PKKR+ L+FSA
Sbjct: 130 VCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQTLLFSA 189

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYHGAK 245
           T + ++  LA+   KD   V +  + +  +        ++  L  + + + + LR H  K
Sbjct: 190 TQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKK 249

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARVCIATDV 303
            +IVF S+   V    +V       +  L+    QQ+             RA V  ATD+
Sbjct: 250 KSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDI 309

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRRAERLF-R 361
           AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q   ++L  +
Sbjct: 310 AARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQGMVQQLLQK 369

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           +  V  +      +  ++++    + QD    +  Q      +  +    D E
Sbjct: 370 KVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKE 422


>gi|29351661|gb|AAH49217.1| DDX10 protein [Homo sapiens]
          Length = 745

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 11/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + + L+ +VLDEAD +LD+GF D +  ++++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V         ++AL G   Q  R          R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ ++  + + 
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKA 425

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHD 412
             ++L ++  V V      P      ++  + IL QD    +  Q      V  +    D
Sbjct: 426 MVQQLLQK-KVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484

Query: 413 PE 414
            E
Sbjct: 485 KE 486


>gi|126306582|ref|XP_001377534.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 59
           [Monodelphis domestica]
          Length = 719

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 180/366 (49%), Gaps = 12/366 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+   P ++   L + GY   T +Q  ++   L  +D++ SA TGSGKT AF L +   
Sbjct: 208 FEHCGFPDILNCNLKKSGYEVPTPIQMQMIPIGLLGRDIVCSADTGSGKTAAFLLPVIIR 267

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L +N        P AL +APTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 268 ALEKN------RTPSALILAPTRELAIQIERQAKELMCGLPNMRTVLLVGGLPLPPQLYR 321

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    +++ TPGRL + ++   + +S +K VV+DEAD ML LGF+  +  IL++ P   
Sbjct: 322 LKQNVKVIIATPGRLLEIMKQSSVELSGIKIVVIDEADTMLKLGFQQQVLDILENIPPDH 381

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + L+ SATI  +I  LA     D +R+ I  +N    ++          +   +   I+N
Sbjct: 382 QTLLVSATIPASIERLASQLLHDPLRITIGEKNLPCPNVRQIILWVEEPSKKKKLFEILN 441

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  + SQ ER++ LQ +  G   V
Sbjct: 442 DEKLFKPPVLVFVDCKLGADLLSDAVHKITGLRSISMHSDKSQMERTSILQGLFQGEYEV 501

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL ++ LV++ ++ S+ +  +H+ GR GR G  G ++  I  N ++   
Sbjct: 502 VVSTGVLGRGLDLINVTLVVNFDMPSSMDEYVHQVGRAGRLGHNGTAITFINNNTKKLFW 561

Query: 358 RLFREA 363
            + +  
Sbjct: 562 DIVKRK 567


>gi|42518569|ref|NP_964499.1| RNA helicase [Lactobacillus johnsonii NCC 533]
 gi|41582854|gb|AAS08465.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
          Length = 461

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 192/389 (49%), Gaps = 12/389 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF+N  I   +   L +  +   T VQ +++   L +K+V+V A TGSGKT A+ + + 
Sbjct: 6   SIFQNEKIRPELQAGLEKINFKKPTKVQSSVIPAFLNKKNVVVQAATGSGKTHAYLIPIL 65

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +              A+  AP+RELA Q+ +    L   +G+ +++     G     +
Sbjct: 66  NMIDESAP------VTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQ 119

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +       +++ TPGRL D    K +N+ ++KA ++DEAD  LD+GF   ++ I+   
Sbjct: 120 IEKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLGQMDEIMSKL 179

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            KK  +  FSATI   +    + Y      + I +       I    + V   D+ + + 
Sbjct: 180 DKKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILY 239

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T  L E   +V  + G ++++ER   ++ +R+G+ +
Sbjct: 240 KLLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQ 299

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARGID+P + LV++ E+  + E ++HR GRTGR G +G ++ +I  +   + 
Sbjct: 300 YVVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQI 359

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQR 385
           E L +   +   ++   + E +      R
Sbjct: 360 EDLEK-LGIHFDFKDLRNGELVERTHYHR 387


>gi|68472255|ref|XP_719923.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
 gi|68472490|ref|XP_719806.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|74656514|sp|Q5ADL0|PRP5_CANAL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
 gi|46441642|gb|EAL00938.1| hypothetical protein CaO19.14123 [Candida albicans SC5314]
 gi|46441768|gb|EAL01063.1| hypothetical protein CaO19.6831 [Candida albicans SC5314]
          Length = 884

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 185/400 (46%), Gaps = 24/400 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+  VI + L    +   +++Q   L   L  +DV+  A+TGSGKT+++ L +   +  +
Sbjct: 303 NLSSVIHDKLK---FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQ 359

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                    P+ L ++PTRELA+Q+ +E+  +      + V  C GG S+  +  +L+ G
Sbjct: 360 QFSKD-NQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKG 418

Query: 125 AHIVVGTPGRLCDH---IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
             I+VGTPGR+ D      G+ LN+     VVLDEAD M DLGF   +  IL      R+
Sbjct: 419 VEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQ 478

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS------------ 229
            ++FSAT    + TLAK    D V + +   +    +I    VL   S            
Sbjct: 479 TVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDKYKQQRV 538

Query: 230 DRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG---ELSQQERSNA 286
           ++ + I+   +     + I+  + + + +                     +   ++ +  
Sbjct: 539 EKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIK 598

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
                D    + IAT +AARG+D+ +L LVI+ +  ++ E+ +HR GRTGRAG KG ++ 
Sbjct: 599 EFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAIT 658

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
            +  +  +    L +   +S   +  P +E I  +   ++
Sbjct: 659 FVSSSQPKEVFNLVKALKLS-HSDIDPKLEEIANKFVTKV 697


>gi|123469039|ref|XP_001317734.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
 gi|121900475|gb|EAY05511.1| Type III restriction enzyme, res subunit family protein
           [Trichomonas vaginalis G3]
          Length = 505

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 178/389 (45%), Gaps = 9/389 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           EN P+ +     +      T VQ  +L   +   +++V + TG+GKT+ F + L   +LA
Sbjct: 122 ENRPE-LENFFKDHSINKPTPVQAQVLPIAINGNNLIVVSPTGTGKTLCFLIPLLYHVLA 180

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           +  +      P AL ++PT  LA Q       L   T +      G    H+++  L  G
Sbjct: 181 QGKQ----EGPTALILSPTELLARQTTLVCHQLIKSTDIKCVELTGNQMKHKQQSSLMKG 236

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A +++GTPGRL + ++           VV+DEAD + + GF   +  I+D     R+ L+
Sbjct: 237 ADVIIGTPGRLMNFLKTVNWQF--CTYVVVDEADRIFETGFLRQLRSIMDYIRPDRQTLL 294

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           F AT+ P I  L+ N  K + RV I       S+I++  V+     +    +        
Sbjct: 295 FGATLPPQIEELSMNSLKFSTRVQIGKTGAPQSNIEHNFVIFDDPAKKREWIKENLLKLP 354

Query: 245 KN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               ++F   +        +L +    +  + G +   +R+ A    R G  R  IAT++
Sbjct: 355 DGLVLLFVKDKNFCDTLYGILKKITNLITLVHGNMDANQRTAAFNKFRKGECRFLIATEI 414

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARG+D+ ++  V++ ++   PE+ +HR GRT RAGR G +  ++       A +L    
Sbjct: 415 AARGVDIENINCVVNVDIPEQPESYIHRVGRTARAGRSGTAFTLLTPRDIDSASKLLHHF 474

Query: 364 NVSVVWEPAPSVEAIRE-RDAQRILQDPL 391
            ++ +  P   +E +   ++ Q+ ++ P 
Sbjct: 475 LLTGIDPPESLIEFVENVQNNQQQMKTPF 503


>gi|289769727|ref|ZP_06529105.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
 gi|289699926|gb|EFD67355.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 495

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 183/373 (49%), Gaps = 7/373 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 69  FADLDMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 128

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L
Sbjct: 129 ---TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASAL 185

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 186 RGGVEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQ 245

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 246 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHGADKHA--ATTEIA 303

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  TR +V R T+ L     +  AL G  SQ +R+  L   ++G   V +AT
Sbjct: 304 ARDGRVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVAT 363

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  S+ ++ LHR GRT RAG  G  V  +  N +R   RL  
Sbjct: 364 NVAARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPVTPNQRRAMTRLMT 423

Query: 362 EANVSVVWEPAPS 374
            A +     P  S
Sbjct: 424 TAGIVPQTTPVRS 436


>gi|256785835|ref|ZP_05524266.1| DEAD-box RNA helicase [Streptomyces lividans TK24]
          Length = 473

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/373 (32%), Positives = 183/373 (49%), Gaps = 7/373 (1%)

Query: 4   FENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++  P  +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL + 
Sbjct: 47  FADLDMPAEMLAALESQGVTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLALLAR 106

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
                 R +    PL L + PTRELA QV   L        + +   +GG+S+ R+   L
Sbjct: 107 ---TAGRRAEPGQPLGLVLVPTRELAQQVTDALRPYARSVKLRLTAVVGGMSIGRQASAL 163

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           + G  +VV TPGRL D I      ++ +   VLDEAD+M D+GF   +  +LD      +
Sbjct: 164 RGGVEVVVATPGRLKDLIDRGDCRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPDGQ 223

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
            ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+          
Sbjct: 224 RMLFSATLDRNVDLLVRRYLSDPVVHSVDPSAGAVTTMEHHVLRVHGADKHA--ATTEIA 281

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 ++F  TR +V R T+ L     +  AL G  SQ +R+  L   ++G   V +AT
Sbjct: 282 ARDGRVLMFLGTRHAVDRLTRDLLNSGVRAAALHGGKSQSQRTRTLAQFKNGHVTVLVAT 341

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +VAARGI +  L+LV++ +  S+ ++ LHR GRT RAG  G  V  +  N +R   RL  
Sbjct: 342 NVAARGIHVDSLDLVVNVDPPSDHKDYLHRGGRTARAGESGSVVTPVTPNQRRAMTRLMT 401

Query: 362 EANVSVVWEPAPS 374
            A +     P  S
Sbjct: 402 TAGIVPQTTPVRS 414


>gi|294952496|ref|XP_002787325.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
 gi|239902284|gb|EER19121.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
          Length = 402

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 8/338 (2%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  + + +   + E+G+   + +QE  + P L  K++L  A+ G+GKT +F + +   
Sbjct: 70  FEDYFLKRELLMGIFEKGFEKPSPIQEESIPPALAGKNILARAKNGTGKTASFLIPMLEK 129

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           +  +            L + PTRELA+Q     + L       V V  GG S+  +   L
Sbjct: 130 VNTDIT-----DGIQGLVLVPTRELALQTSAVAKELGKYMDAQVMVTTGGTSLRDDIMRL 184

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLN-ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
            N  HI+VGTPGR+ D       +        V+DEAD++L   F+  +E ++   PK++
Sbjct: 185 YNTVHILVGTPGRVLDLTNKGVCSLSDTCTMCVMDEADKLLSPEFQPVVEELVRFLPKEK 244

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           R ++  +   P      KN            E      +      V    + + +  +  
Sbjct: 245 RQILMFSATFPVTILDFKNKYMPDAVEINLMEELTLKGVTQFYAFVEERQKVHCLNTLFS 304

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                 AI+FC++   V    K + E  F    +   + Q  R+      R+G  R  ++
Sbjct: 305 KLTINQAIIFCNSVTRVELLAKKITELGFSCFYIHARMYQSHRNRVFHDFRNGACRCLVS 364

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +D+  RGID+ ++ +VI+ +   N E  LHR GR+GR 
Sbjct: 365 SDLFTRGIDIENVNVVINFDFPKNSETYLHRIGRSGRF 402


>gi|194208790|ref|XP_001498450.2| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19B isoform 1
           [Equus caballus]
          Length = 445

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 57  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 116

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +            P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 117 AMLSRVQPAE------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 170

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 171 RGQKISEHIVIGTPGTVLDWCAKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 230

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 231 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 290

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 291 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 350

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 351 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 410

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 411 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 442


>gi|324006198|gb|EGB75417.1| DEAD/DEAH box helicase [Escherichia coli MS 57-2]
          Length = 432

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 188/363 (51%), Gaps = 8/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +               L + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVS------LFQTQGLVLCP 54

Query: 83  TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L    +   +    GG     +R  LQ+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPL 353

Query: 382 DAQ 384
           +A+
Sbjct: 354 EAE 356



 Score = 53.1 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|317418863|emb|CBN80901.1| ATP-dependent RNA helicase DDX19B [Dicentrarchus labrax]
          Length = 488

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 157/392 (40%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 100 VKSFEELRLKPQLLQGVYGMGFNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVL 159

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV-H 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +      V  V     +   
Sbjct: 160 AMLSHVDPNN------KYPQCLCVSPTYELALQTGKVIEQMGKHYPEVRLVYAIRGNKLQ 213

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R  +  +       GT    C   +        +  +   +            I      
Sbjct: 214 RGMKLQEQIVIGTPGTMLDWCGKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 273

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   Y  +  +  ++  A+
Sbjct: 274 PKNCQMLLFSATFEESVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSREEKFQAL 333

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR +       L+    QV  LSGE+  ++R+  +   RDG+ 
Sbjct: 334 CNIYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKE 393

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++ 
Sbjct: 394 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVD 453

Query: 350 QNM-QRRAERLFREANVSVVWEPAPSVEAIRE 380
             M      R+    +  +       ++ I +
Sbjct: 454 SRMSMNILNRIQEHFSKKIEKLDTDDLDEIEK 485


>gi|241958758|ref|XP_002422098.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223645443|emb|CAX40099.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 440

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 113/427 (26%), Positives = 189/427 (44%), Gaps = 24/427 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++   + + E+L        TS+Q A +   L+  D +  A+TGSGKT+AF   + +
Sbjct: 2   SFNDLGVARWLSESLDAMKIYTPTSIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +            L + PTRELA+Q+  +   L A   + VAV +GG    ++   
Sbjct: 62  RWSEDP------FGIFGLILTPTRELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLA 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           LQ   H V+ TPGRL DHI   G         +K +VLDEAD +L   F  D++   D  
Sbjct: 116 LQRKPHFVIATPGRLADHILNSGEETISGLRRVKYLVLDEADRLLSNSFGSDLQRCFDVL 175

Query: 177 PKKRRMLM----------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           P   +               A      T          V             I Y  V  
Sbjct: 176 PPSDKRQTLLFTATITDAVRALKEKPPTPGKPPVFMHEVETVDKVAIPSTLQISYVFVPS 235

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            + +     +  L       A++F +   +     ++L +  F+V +L  E+ Q ER+N+
Sbjct: 236 YVKEAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRMLRKLDFRVASLHSEMPQSERTNS 295

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   + G AR+ IATDVA+RG+D+P +ELVI+ ++ ++P++ +HR GRT RAGRKG +V 
Sbjct: 296 LHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVS 355

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER--DAQRILQDPLFLDSIQGDEKKMV 404
           +I +    R + +    N  +      + + + +    A  + +    ++  + +  +  
Sbjct: 356 IIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRESLMEMDKENFGERK 415

Query: 405 DVLLAKH 411
            +   KH
Sbjct: 416 KINRKKH 422


>gi|255718187|ref|XP_002555374.1| KLTH0G07766p [Lachancea thermotolerans]
 gi|238936758|emb|CAR24937.1| KLTH0G07766p [Lachancea thermotolerans]
          Length = 764

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 108/425 (25%), Positives = 193/425 (45%), Gaps = 14/425 (3%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           ++F+++P      + L +  ++ +T +Q+  +   L+  D+L +A+TGSGKT+AF + + 
Sbjct: 41  ELFKDLPLSHQTLKGLRDSAFIKMTEIQKMSIPVSLKGHDLLAAAKTGSGKTLAFLIPVI 100

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  E  +++      AL I+PTRELA+Q    L  +   T     + IGG  V  E  
Sbjct: 101 EKLYRE--KWTEFDGLGALIISPTRELAMQTYEVLTKIGRYTSFSAGLVIGGKEVKFELD 158

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            +     +V      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  
Sbjct: 159 RISKINILVGTPGRILQHMDQAVGLNTSNLQVLVLDEADRCLDMGFKKTLDAIVMNLPPV 218

Query: 180 RRMLMFSATISPAITT------LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
           R+ L+FSAT S ++                A   + ++ +     +    + V L D+ +
Sbjct: 219 RQTLLFSATQSQSLADLARLSLTDYKSVGTAEVKDDSNSSATPDTLQQSYISVELPDKLD 278

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMR 291
            + + ++ H     IVF S+   V    +   +    +  +     Q++ +         
Sbjct: 279 ILFSFIKTHLKCKMIVFLSSSKQVHFVYETFRKLQPGISLMHLHGRQKQTARTETLDKFS 338

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
             +     ATDV ARGID P ++ V+ A+   N +  +HR GR+ R G++G S V + PQ
Sbjct: 339 RAQHTCLFATDVVARGIDFPAVDWVVQADCPENVDTYIHRVGRSARYGKQGKSLVMLTPQ 398

Query: 351 NMQRRAERL-FREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
             +   +RL  R    + +       ++I+ +    + QDP      Q      V  +  
Sbjct: 399 EEEGFLKRLKQRHIEPNKLTIKQSRKKSIKPQLQSLLFQDPELKYLGQKAFISYVRSIFI 458

Query: 410 KHDPE 414
           + D E
Sbjct: 459 QKDKE 463


>gi|50305859|ref|XP_452890.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660559|sp|Q6CT49|PRP28_KLULA RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
 gi|49642023|emb|CAH01741.1| KLLA0C15433p [Kluyveromyces lactis]
          Length = 539

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 196/396 (49%), Gaps = 9/396 (2%)

Query: 7   IPQVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           IP+ +   ++ +  Y   TS+Q + +   +  +D +  A TGSGKT+AF L +   L   
Sbjct: 144 IPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGI 203

Query: 66  ND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--GVVVAVCIGGVSVHRERRDL 121
                 +    PLAL +APTRELA Q+  E + +         +   +GG S+     +L
Sbjct: 204 PPLNSITKHDGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISANL 263

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSPKK 179
           ++G  I+V TPGRL D +    L +  +  +VLDEAD+M+D GF D +  I     +   
Sbjct: 264 RDGCDILVATPGRLLDCLDSHLLFLKQVNTLVLDEADKMIDFGFEDQLTTILAKTETISN 323

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           R+ +MF+AT SP I  +A  Y K    V +  E  +         +    ++   +V   
Sbjct: 324 RQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKLKILVKDF 383

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             +     I+F + + +       L E  F+   L G  SQ++R ++L ++R+G+  + I
Sbjct: 384 LPNYKAPIIIFINYKRTADWLFDKLREARFRATTLHGSKSQEQREHSLSLLRNGKVDILI 443

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-ER 358
           ATDVA RGID+P++ LV++ +   + ++ +HR GRTGRAG+ G ++  + +     A  +
Sbjct: 444 ATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVGRTGRAGKTGTALTFLTEEEDHSAMAK 503

Query: 359 LFREANVS-VVWEPAPSVEAIRERDAQRILQDPLFL 393
           LF     +    E   S EA+ + +  +    P+ +
Sbjct: 504 LFDYVKKNDFTGENYISKEAMSKYNVDKSSYKPIII 539


>gi|325911916|ref|ZP_08174319.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners UPII 143-D]
 gi|325476218|gb|EGC79381.1| putative DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
           iners UPII 143-D]
          Length = 419

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 181/384 (47%), Gaps = 10/384 (2%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 10  DQLKPNIKKGLGKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 69

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 70  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 124 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 184 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 244 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 304 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 363

Query: 362 EANVSVVWEPAPSVEAIRERDAQR 385
              +   ++   + E +      R
Sbjct: 364 -LGIHFEFKDLKNNELVERTHYHR 386


>gi|312872885|ref|ZP_07732947.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311091619|gb|EFQ50001.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 462

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 202/457 (44%), Gaps = 17/457 (3%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
           + +   I + L +  ++  T VQ+ +L   L  ++V+V A TGSGKT A+ + + + L  
Sbjct: 12  DQLKSNIKKGLGKINFLKPTPVQQQVLPLLLAHQNVVVQAVTGSGKTHAYLIPIINDLDP 71

Query: 65  ENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           E           A+  AP+RE      +V R+L         +  +  G     +  +  
Sbjct: 72  E------LLCTQAVITAPSRELASQLYKVARQLRDAAELNISIEYLGGGNDRTRQLEKAS 125

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +++ TPGRL D    K + +  +   ++DEAD  LD+GF + ++ I+        
Sbjct: 126 NNAPQLIIATPGRLHDFAIKKIIKLDQVSTFIIDEADMTLDMGFLNQMDDIMVRLGTNVT 185

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           +  FSATI   +      Y +    V I + +     +    + V   ++ + +  +L  
Sbjct: 186 IGAFSATIPVKLEQFLNKYMEHPEFVVIDNPSVISPTVANDLIDVGSKNKKDILYTLLTM 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A VF +T+ +V      L +   +V  + G ++++ER   ++ +R+G+ +  IA+
Sbjct: 246 GQPYLAFVFANTKKTVDELATYLDQKGLKVAKIHGGITERERKRTIRQVREGQYQYVIAS 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+P + LVI+ E+ ++ E ++HR GRTGR    G ++ +I +   ++  +L +
Sbjct: 306 DLAARGIDIPGISLVINYEIPTDLEFVIHRIGRTGRNNLYGHAITLIHEEEMQQIAQLEK 365

Query: 362 EANVSVVWEPAPSVEAIR-----ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
              +   ++   + E +       RD +R     L    +   +K  V          K+
Sbjct: 366 -LGIHFEFKDLKNNELVERTHYHRRDNRRTRAQKLDNRLVGMVKKAKVKKKPGYKKKIKV 424

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAF 453
           A    R  +  +   E I        R R RD  R  
Sbjct: 425 AIQADRQQKKKI--EERIKARKQKRQRKRERDRLRED 459


>gi|145347049|ref|XP_001417991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578219|gb|ABO96284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 346

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 181/369 (49%), Gaps = 37/369 (10%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL +RG   L  +Q+A+L P L  +DV+  A+TG+GKT+AF L +   LL +       +
Sbjct: 15  ALRKRGVDTLFPIQQAVLKPALSGEDVVGRARTGTGKTLAFALPVIERLLTDGTSGRSRN 74

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
            P  + +APTRELA QV  E+        +      GG  + ++   L+ G  IVVGTPG
Sbjct: 75  -PKCIVLAPTRELAKQVENEI--CITAPSLETVCVYGGTPIGQQEGKLRRGVDIVVGTPG 131

Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
           R+ D +  + L++  ++ VVLDEAD+ML++GF +D+E IL   P+ R+  +FSAT+   +
Sbjct: 132 RVQDLMNRRSLDLGEIEFVVLDEADQMLNVGFEEDVEAILQDCPESRQTFLFSATMPSWV 191

Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST 253
             +                                  +       +     K AI F  T
Sbjct: 192 KQIT---------------------------------KKFLKPGHVVVDLDKKAICFTQT 218

Query: 254 RASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
           + +    T  L   +   V   G+++Q +R   LQ  RD R  V IATDVAARG+D+ D+
Sbjct: 219 KRAADELTAALGRRVASEVLH-GDIAQAQRERTLQRFRDNRFSVLIATDVAARGLDISDV 277

Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAP 373
           +LVIH EL ++ E+ +HR GRTGRAG+ G ++ +          R+ +E          P
Sbjct: 278 DLVIHYELPNDVESFVHRCGRTGRAGQLGAAIAMHTDRESYMIRRIKKETGCEFRTIGIP 337

Query: 374 SVEAIRERD 382
           S    R R 
Sbjct: 338 SSTETRLRR 346


>gi|311897074|dbj|BAJ29482.1| putative ATP-dependent RNA helicase [Kitasatospora setae KM-6054]
          Length = 487

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 122/374 (32%), Positives = 190/374 (50%), Gaps = 7/374 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  FE +  P  +   L+ RG  +   +Q A L   L  +DVL   +TGSGKT+AFGLA+
Sbjct: 45  VDSFEELELPGGLLTILARRGVTSPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAV 104

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    +    +    PLAL + PTRELA QV   L        + +A  +GGV V R+ 
Sbjct: 105 LARTTGQQ---AEPRQPLALVLVPTRELAQQVTEALTPYAHAAKLRMATVVGGVPVRRQA 161

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  GA IVV TPGRL D I  +   +  +   VLDEAD+M D+GF  D+  +L+   +
Sbjct: 162 QVLNRGAEIVVATPGRLGDLIERRLCRLDRVAVTVLDEADQMTDMGFLPDVTALLEQVAE 221

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   + +L + + KD V  ++         +++  + V  +D+D  I + 
Sbjct: 222 GGQTMLFSATLDRNVDSLVRRFLKDPVTHSVDPSAGAVGTMEHHVLHVRGADKDATIAH- 280

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T+    R    L  +  +  AL G  SQ +R+  L+  R G     
Sbjct: 281 -IASRDGRVIMFTDTKHGADRLVAALLANGVKAAALHGGKSQPQRTRTLEQFRGGLVDAL 339

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARGI +  L+LV++ +  ++ ++ LHR GRT RAG  G  V ++  N +R   R
Sbjct: 340 VATDVAARGIHVDGLDLVVNLDPPADHKDYLHRGGRTARAGESGTVVTLVLPNQRRGTAR 399

Query: 359 LFREANVSVVWEPA 372
           +   A ++ V    
Sbjct: 400 MLATAGITPVTTEV 413


>gi|224036359|pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-Eif4a
 gi|224036361|pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-Eif4a
          Length = 414

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 46  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 105

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 106 ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 159

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 219

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 220 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 279

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 339

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 400 NTSIEEMPLNVADLI 414


>gi|170088270|ref|XP_001875358.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650558|gb|EDR14799.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 691

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 190/388 (48%), Gaps = 28/388 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           IPQ I + + + GY + + +Q   +   L  +D++  A+TGSGKT AF + + S +    
Sbjct: 271 IPQPILDCIEQIGYKDPSPIQRQAIPIGLLNRDIIGIAETGSGKTAAFVIPMLSFISGLP 330

Query: 67  DRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
                     P AL +APTRELA Q+  E     +  G      +GGVSV  ++ +L+ G
Sbjct: 331 PFTDDIRHLGPYALIMAPTRELAQQIESEARKFASPLGFKCVSIVGGVSVEEQQFNLREG 390

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A I++ TPGRL D I    L +S  + VV+DEAD M+ LGF  D+ FILD+ P +     
Sbjct: 391 AEIIIATPGRLKDVIERHVLVLSQCRYVVMDEADRMVHLGFEADLTFILDALPSETMQGE 450

Query: 185 ------------------------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                                   FSAT+  A+  LA+ Y K    + I    R    ++
Sbjct: 451 DLGEQMDVDGETMIKKGRTRVTTLFSATMPAAVERLARKYLKKPAVITIGEAGRAVDTVE 510

Query: 221 YRAVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            R   V+  ++    +  +      A   IVF + + +     K L+   +    L    
Sbjct: 511 QRVEFVSGDEKKKQKLLEILNSGQYASPIIVFVNQKKTADMVAKDLSRAGWNAATLHSGK 570

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
           +Q++R  +LQ +R+G + V +ATD+A RGID+ D+ LVI+ ++++  E  +HR GRTGRA
Sbjct: 571 NQEQREASLQSLRNGESDVLVATDLAGRGIDVQDVSLVINFQMANTIEAYVHRIGRTGRA 630

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVS 366
           G+ G ++  +  +       L +E + S
Sbjct: 631 GKLGTAITFLTNDDDEVMYDLKQEISKS 658


>gi|269959250|ref|ZP_06173634.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
 gi|269835952|gb|EEZ90027.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
          Length = 436

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 124/411 (30%), Positives = 190/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  KDVL  A TGSGKT+A+GL L   L   
Sbjct: 31  SLSSELIHALPK-DFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLLEKLSVN 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA QV   +  +    G+      GGV    + + L +  
Sbjct: 90  PEQ-------KALILVPTRELATQVSEAINQVGQAIGLNAVCLCGGVDKETQLQALASDP 142

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I      +R+  MF
Sbjct: 143 HILVATTGRLVDLANNGL-DLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISNQRQTAMF 201

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK       +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 202 SATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNTWT 261

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +      AL G  SQ ER  AL   + G+ +V IATD+ A
Sbjct: 262 QVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALAQFKSGQTQVLIATDLLA 321

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FR 361
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++          +     R
Sbjct: 322 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEAEALTAIRNLTQR 381

Query: 362 EA------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           E          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 382 ELPTQDLEGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKPKRQA 432


>gi|74025742|ref|XP_829437.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei TREU927]
 gi|70834823|gb|EAN80325.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
          Length = 556

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 19/403 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ + +   L ER +   T +Q   +   ++ +DVL  A TGSGKTVAF + + + L   
Sbjct: 137 SLDECLISNLFERNHRIPTPIQMQTIPCLVQGRDVLACAPTGSGKTVAFLIPMFARL--- 193

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +    +   AL I PT ELA Q+ RE  +L       +           +        
Sbjct: 194 -GKPDRDAGVRALIITPTMELAEQIEREAFFLLKGKRWKLV----------QHGQTTRNK 242

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD----LGFRDDIEFILDSSPKKRR 181
            I + TPGR+   +  K +++S+++ +V DE D + D         DI     +  +K  
Sbjct: 243 DIFITTPGRVSTLLERKLVDLSNIQYLVFDEGDRLWDSSTDNLRVMDIVLTACTYKEKVV 302

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
            L  +                D VR+ ++   + + ++    V       +  AI NI+R
Sbjct: 303 ALFTATLSEKIEAAARSVMGPDPVRIIVSGRAKANKNVKQELVFCGNELGKVVAIRNIVR 362

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  +        + +     ++  ++ +++ +ER   +   R G+  V + 
Sbjct: 363 EGVTPPVLIFVQSIERTKELHEEIQCQGLRIAIMNAKMTHEERDETMMNFRLGKIWVLVT 422

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T++ +RGID  ++  VI+ ++ +  E+ +HR GR GRAG+ G ++    ++ + R   + 
Sbjct: 423 TELLSRGIDFKNVGTVINFDIPTTVESYIHRVGRCGRAGKTGKAITFFTEDDKHRIPPIA 482

Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKM 403
           R    S        +E    R  +R LQ       I    K+M
Sbjct: 483 RVMKESGSPIEDWMLEIKTHRSVRRRLQRTTPHRMIVSTRKRM 525


>gi|222635678|gb|EEE65810.1| hypothetical protein OsJ_21540 [Oryza sativa Japonica Group]
          Length = 921

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/404 (26%), Positives = 182/404 (45%), Gaps = 17/404 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++  +  + +   GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF L     +  L
Sbjct: 459 SLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKL 518

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDL 121
              D          + + PTRELA Q   E   L      +    V  G      ++R  
Sbjct: 519 PPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMH 578

Query: 122 QNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            N   I+V TPGRL DH+         +  +K ++LDEAD +LD+GFR DIE I+ + PK
Sbjct: 579 TNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPK 638

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDR 231
           +R+ L+FSAT+   +  +     K  +      E            +          S  
Sbjct: 639 QRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSIL 698

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + + +  +     IVFC+T    S   ++L+E    V  +     Q  R+   +  +
Sbjct: 699 YGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFK 758

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  + +++DV+ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++   
Sbjct: 759 ESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPW 818

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +     +    ++ +     P ++   +R  ++ L      D 
Sbjct: 819 EEYFLRSI---KDLPITEATLPLIDLDTKRKVEKALAHVEVKDK 859


>gi|143454912|sp|Q0DBU5|RH31_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 31
          Length = 547

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/404 (26%), Positives = 182/404 (45%), Gaps = 17/404 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--L 63
           ++  +  + +   GY  +T+VQEA L   L+ KDVL  A+TG+GKTVAF L     +  L
Sbjct: 85  SLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPAIEVVSKL 144

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDL 121
              D          + + PTRELA Q   E   L      +    V  G      ++R  
Sbjct: 145 PPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGTRMALEQKRMH 204

Query: 122 QNGAHIVVGTPGRLCDHIRGKG---LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            N   I+V TPGRL DH+         +  +K ++LDEAD +LD+GFR DIE I+ + PK
Sbjct: 205 TNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPK 264

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-------ALSDR 231
           +R+ L+FSAT+   +  +     K  +      E            +          S  
Sbjct: 265 QRQTLLFSATVPDEVRQVCHIAMKRDLEFVNTVEEGSEETHSQVKQMHVVAPLDKQFSIL 324

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
              + + +  +     IVFC+T    S   ++L+E    V  +     Q  R+   +  +
Sbjct: 325 YGLLTDHISENVDYKVIVFCTTAKVTSLVAELLSELKLNVREIHSRKPQSYRTRISKEFK 384

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
           + +  + +++DV+ARG+D P++ LV+   + ++ E  +HR GRTGR G +G  + ++   
Sbjct: 385 ESKGLILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILLLAPW 444

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS 395
            +     +    ++ +     P ++   +R  ++ L      D 
Sbjct: 445 EEYFLRSI---KDLPITEATLPLIDLDTKRKVEKALAHVEVKDK 485


>gi|158257374|dbj|BAF84660.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|224092470|ref|XP_002309623.1| predicted protein [Populus trichocarpa]
 gi|222855599|gb|EEE93146.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 176/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +   +
Sbjct: 54  LKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTS 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +       +AL +  TRELA Q+  E E               G    +  +D      
Sbjct: 114 GQV------IALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|307110624|gb|EFN58860.1| hypothetical protein CHLNCDRAFT_48551 [Chlorella variabilis]
          Length = 407

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 12/364 (3%)

Query: 22  NLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA 81
             T VQ   +   L  ++V+  A TGSGKT AF L +   L              AL + 
Sbjct: 3   EPTQVQRGTIPAVLAGRNVIGVAHTGSGKTAAFALPILQKLAKNP------FGVFALVLT 56

Query: 82  PTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL---CDH 138
           PTRELA Q+  +   L     +   V +GG+ +  + ++L    H+V+ TPGRL      
Sbjct: 57  PTRELAFQLADQFRALGTGMSLKDCVVVGGLDMTAQAKELARRPHVVIATPGRLRGLLQL 116

Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAK 198
                      + +VLDEAD +L+  F  ++  +L + P++R+ L+FSAT++  +  L K
Sbjct: 117 DGELARVFGRARFLVLDEADRLLEPSFESELAVVLGALPERRQTLLFSATMTQTLVELQK 176

Query: 199 NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN---ILRYHGAKNAIVFCSTRA 255
              +DA         +  + +    + +    ++  +V+    L     ++AI+F  T  
Sbjct: 177 QLLRDAYHFQAYEGLQTAAKLRQEYLFLPAKVKEVYLVHLLGQLEELQCRSAIIFAGTCK 236

Query: 256 SVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLEL 315
                + +L E      AL     Q+ R  AL   + G   + +ATDVA+RG+D+P ++L
Sbjct: 237 GCHLLSLLLEELGIAAAALHSHKPQRARLEALHRFKSGSVPILLATDVASRGLDIPSVDL 296

Query: 316 VIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           V++ +L     + +HR GRT RAGR+G S+  + Q      +++       +        
Sbjct: 297 VVNYDLPQMARDYVHRVGRTARAGRRGWSLSFVTQYDIDLVQQIEVLVGQQLGKFELEEA 356

Query: 376 EAIR 379
           EA++
Sbjct: 357 EALK 360


>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
 gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
           [Alteromonadales bacterium TW-7]
          Length = 440

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 105/374 (28%), Positives = 181/374 (48%), Gaps = 5/374 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM---LMFSATISP 191
           L DH+  + L +S L+ ++ DEAD +LDLGF + ++ I D +  + R       +   + 
Sbjct: 134 LADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRLRQTLLFSATLDHAQ 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                    +K       A+  +         +   L  ++  + + L+       I+F 
Sbjct: 194 VDALSRNLLKKPKQITLSAANEQHSDITQTLYLADHLDHKEALLAHFLKQDEVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+ VAL+G+L+Q +R + +     G  ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSEELNNKGFKSVALAGDLTQSKRLDIMDSFSRGNFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++          +    N  + +  
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGTAISLVGPKDWASYLAIKSFLNDELKFAT 373

Query: 372 APSVEAIRERDAQR 385
              ++A  +   ++
Sbjct: 374 IDGLKAKFKGIKEK 387


>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
          Length = 874

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 9/381 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L A  
Sbjct: 102 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 161 ---SAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  +++ +  +    +LV    +      +        
Sbjct: 278 ATLPKLLVEFAQAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQ 337

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L Q  R   L      +    I TD+A
Sbjct: 338 DQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLA 397

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 398 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457

Query: 365 VSVVWE---PAPSVEAIRERD 382
            SV        PSV     RD
Sbjct: 458 RSVTLARPCEEPSVADAVGRD 478


>gi|291383932|ref|XP_002708524.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Oryctolagus
           cuniculus]
          Length = 872

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             +
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLFRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKK 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQYDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEK 425

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  +++R    + QD    +  Q      +  +    D
Sbjct: 426 GMVQQLLQKKVPVKEIKINPEKLMDVQKRLESFLAQDRDLKERAQRCFVSYIRSVYLMKD 485

Query: 413 PE 414
            E
Sbjct: 486 KE 487


>gi|261251704|ref|ZP_05944278.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
 gi|260938577|gb|EEX94565.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891]
          Length = 412

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 125/411 (30%), Positives = 193/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    +  AL  +G+   T +Q   +   +  KDVL  A TGSGKT+A+GL L   L A+
Sbjct: 7   SFSSELIHALP-QGFQKPTDIQALAIPELMAGKDVLALANTGSGKTLAYGLPLLEKLKAD 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL + PTRELA+QV   L  +    G+      GGV    +++ L +  
Sbjct: 66  TKQ-------QALVLVPTRELAIQVSEALNQVGQTLGLNAVCLCGGVDKELQQQALADSP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           +I+V T GRL D       ++S +  +VLDEAD +LD+GF  D++ I      KR+  MF
Sbjct: 119 NILVATTGRLVDLANNGL-DLSQVDYLVLDEADRLLDMGFWPDVQTIASQVSAKRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   A+       +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDDLKQKAQQLMLAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNTWS 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +      AL G  SQ ER  AL + + G+  V IATD+ A
Sbjct: 238 QVLVFIGAKENADGLAKKLNKAGITTNALHGNKSQVEREEALTLFKSGKTNVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FR 361
           RGI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++          +     R
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGKQGVAMSLVCHGETEALNAIRQLTQR 357

Query: 362 EA------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           E          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ELATQDLEGFPVTDKPSTGESKRAPRDKKANRRTNAKKSVKQFQGKPKRQA 408


>gi|170083961|ref|XP_001873204.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650756|gb|EDR14996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 355

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 110/347 (31%), Positives = 182/347 (52%), Gaps = 5/347 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + + ++++  G+   T +Q A +   L  KDV+ +A TGSGKT AF + +   LL  
Sbjct: 2   NLSRPLLKSIASLGFNKPTPIQAAAIPVALLGKDVVGNAMTGSGKTAAFIIPMVERLLY- 60

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++   A+A   L + PTRELAVQ       L   T + + + +GG+S+  +   L+   
Sbjct: 61  REKGKKAAATRCLVLVPTRELAVQCFDVGVKLSTHTDIQLCLLVGGLSLKSQEVALRARP 120

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            IV+ TPGRL DHIR      +  +  +VLDEAD ML  GF D++  I+ S P  R+ ++
Sbjct: 121 DIVIATPGRLIDHIRNSPAFTLDAIDILVLDEADRMLSDGFADELAEIIKSCPVSRQTML 180

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA---LSDRDNAIVNILRY 241
           FSAT++ ++  L K      VR+ +         +    V V     S+R   +V + + 
Sbjct: 181 FSATMTDSVDELVKMSLNKPVRLFVDPRKATARGLVQEFVRVRAGKDSERSALLVALCKR 240

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 I+F  ++    +   V +    +   L G+LSQ++R  ALQ+ RDG+    +AT
Sbjct: 241 TFKNRVIIFLRSKKLAHQMRIVFSLLGLKCEELHGDLSQEQRLKALQLFRDGQVDFLMAT 300

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           D+A+RG+D+  +E +I+ ++       LHR GRT RAG++G    ++
Sbjct: 301 DLASRGLDIKGVETIINYDMPGQLSQYLHRVGRTARAGKQGRVHILV 347


>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
 gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
           curdlanolyticus YK9]
          Length = 503

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 189/362 (52%), Gaps = 7/362 (1%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
           Q + +AL   G    T+VQ   +   L   DV   +QTGSGKT+AF L +   L      
Sbjct: 12  QPLADALEAAGIKEPTAVQSEAIAALLAGADVTARSQTGSGKTLAFLLPMLEQLD----- 66

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRDLQNGAHI 127
            S +SA  A+ +APT+ELA+Q+ R  +      G+ V  +  G     +     ++   +
Sbjct: 67  -SASSAVQAVVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAMSRQVENLKKHKPQL 125

Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
           VVGTPGR+ +   G+ L +S +  VV+DEAD++ +LG   +++ IL  + ++R++  FSA
Sbjct: 126 VVGTPGRIHELAAGRKLKLSSVTKVVIDEADQVFNLGSVREVDVILKGTSRERQVAFFSA 185

Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
           T    +  + + + ++   V+++   R    I +  ++V   D+ +    ++R      A
Sbjct: 186 TRPEEMAGMERKWMREPKLVDVSGTQRVAESIKHHFIVVDKRDKVDVARRLVRLINPSAA 245

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           ++F +   +++++   L    F V  L G+ ++Q RS  L   R G  ++ +ATDVAARG
Sbjct: 246 LLFLNDTENIAQWESKLRYEGFSVEMLYGDANKQRRSVTLDRFRSGSCKLLLATDVAARG 305

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +D+  L LVI+ +   + ++ +HR+GRTGR G+ G+ + +I    +   ++  +   + +
Sbjct: 306 LDIEGLPLVINLDPPIDADHYVHRAGRTGRMGKPGVVISIITYQERFIMDKFSKRLGIDL 365

Query: 368 VW 369
             
Sbjct: 366 TE 367


>gi|315501146|ref|YP_004080033.1| dead/deah box helicase domain protein [Micromonospora sp. L5]
 gi|315407765|gb|ADU05882.1| DEAD/DEAH box helicase domain protein [Micromonospora sp. L5]
          Length = 629

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 155/567 (27%), Positives = 241/567 (42%), Gaps = 39/567 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + E L+ +G      +Q A L   L  +DVL   QTGSGKT+AFGL + + L   N
Sbjct: 27  LPRQVVEVLARQGITTPFEIQRATLPDSLAGRDVLGRGQTGSGKTLAFGLPVIARLADRN 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P AL + PTRELA+QV   L  L    GV +   +GGV   R+   L+ G  
Sbjct: 87  R--ARPLHPRALVLVPTRELAMQVNDALMPLGKAVGVFLKTAVGGVPYDRQIDALRRGVE 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           IVV TPGRL D I      +  ++  VLDEAD+M D+GF  ++  +L  +P   + L+FS
Sbjct: 145 IVVATPGRLGDLIERGVCRLDDVEITVLDEADQMADMGFLPEVTQLLAKTPADAQRLLFS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   + TL K +  D V  + A      S +D+  +L+   D+    V          
Sbjct: 205 ATLDNDVDTLVKRFMTDPVTHSTAPATAAVSTMDHHLLLIPPHDK--FAVAASIAAREGR 262

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            ++F  T+  V R  + LA    +   L G  +Q+ R+  L   R+GR  V +ATDVAAR
Sbjct: 263 TMLFARTQLGVDRLVEQLAAVGVRAGGLHGGKTQRMRTKTLAEFREGRTPVLVATDVAAR 322

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  + LV+H +   +P++ LHR+GRT RAG  G    ++    +R    +  +A V 
Sbjct: 323 GIHVDGVSLVLHVDPPKDPKDYLHRAGRTARAGESGAVATLVLPKQRRTTLAMMEKAGVE 382

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                 P+   +R  D          L  + G  +     +  + +P +         R 
Sbjct: 383 ------PAETRVRAGD--------EALAELTGAREPSGVPVRDEPEPRRGGGSRRFGDRD 428

Query: 427 GLCAPEEITPVSLVSGRDRFRD-DSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAEARWLM 485
           G              G  RF D D R  +  G      +    F+   G ++  +     
Sbjct: 429 GRGFDRGGRGGFSDRGERRFGDRDGRGERRFGDRPAGERSGDRFADRGGDRRFGDRPAGE 488

Query: 486 PMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEKPDFRG 545
                 SG  R+  G    + D +F                 D+    +  G ++ D RG
Sbjct: 489 RYSGERSGGERR-FGRPERRDDRSF----------------GDRRSDGRSFGEQRSDDRG 531

Query: 546 YKSSGFKSKNSQD---GATKRFKRFKG 569
            +    +     +   G  +R    +G
Sbjct: 532 QRGDDRRFGERSEQPYGDRQRPATGRG 558


>gi|16077810|ref|NP_388624.1| ATP-dependent RNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308581|ref|ZP_03590428.1| hypothetical protein Bsubs1_04163 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312906|ref|ZP_03594711.1| hypothetical protein BsubsN3_04119 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317830|ref|ZP_03599124.1| hypothetical protein BsubsJ_04073 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322104|ref|ZP_03603398.1| hypothetical protein BsubsS_04164 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81815767|sp|O34750|YFML_BACSU RecName: Full=Putative ATP-dependent RNA helicase yfmL
 gi|2443255|dbj|BAA22326.1| YfmL [Bacillus subtilis]
 gi|2633067|emb|CAB12572.1| putative ATP-dependent RNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 376

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 192/359 (53%), Gaps = 8/359 (2%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
           I E  +  G+   T VQE      +  KDV+  + TG+GKT+A+ L +   +  E     
Sbjct: 15  IQENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQ---- 70

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
               P A+ +AP+REL +Q+ + ++   A + +  A  IGG +V ++   L+   HI+VG
Sbjct: 71  --KHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVG 128

Query: 131 TPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS 190
           TPGR+ + I+ K L +  +K +VLDE D+++    R+ ++ I+ ++ + R++L FSAT+ 
Sbjct: 129 TPGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATLK 188

Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
                + +   ++   + +     +   + ++ ++    D+   ++  L       A+VF
Sbjct: 189 KETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDK-VKLLQKLSRLEGMQALVF 247

Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
                ++S + + LA H  ++  L  E  + ER+  +    DG   + +ATD+AARG+D+
Sbjct: 248 VRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATDIAARGLDI 307

Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVW 369
            +L  VIHA++  + +  +HRSGRTGRAG++G  + ++ +  + + +++ ++  V +  
Sbjct: 308 ENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVELSE 365


>gi|238502010|ref|XP_002382239.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220692476|gb|EED48823.1| ATP-dependent RNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 498

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 115/396 (29%), Positives = 190/396 (47%), Gaps = 19/396 (4%)

Query: 3   IFENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++P     +   LS   + + TS+Q A        +DV+  A+TGSGKT+AFGL   
Sbjct: 82  SFSHLPPCKDDLYAPLSS--FKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL 139

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +            PLA+ I+PTRELA+Q+  +L       GV +A C+ G     E+R
Sbjct: 140 KKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGVRMA-CVFGGVRKEEQR 198

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    A +VV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+   P  
Sbjct: 199 EALKTAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVS 258

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           +R  +      P       +    +        + +++ R ++ I     +V   ++++ 
Sbjct: 259 KRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESR 318

Query: 235 IVN-----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +V             +  + FC  +    R  ++L    F+V  + G+LSQQER  +L  
Sbjct: 319 LVQLLNRSQRGVPEPEKVLAFCLYKKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDA 378

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G A V +ATDVAARG+D+P ++ VI+       E+ +HR GRTGRAG +G +V +  
Sbjct: 379 FKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFT 438

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRERD 382
           +  + ++  L    R A   +  +       ++++ 
Sbjct: 439 ETDKAQSGALINVLRAAKQDIPEDLLKFGTTVKKKQ 474


>gi|146180580|ref|XP_001021192.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila]
 gi|146144450|gb|EAS00947.2| Helicase conserved C-terminal domain containing protein
           [Tetrahymena thermophila SB210]
          Length = 602

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 174/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           MK     P+ I   L E+     T +Q   L   L  +D++  A TG GKT+ F L    
Sbjct: 141 MK----FPKKIIAILKEKKVKKPTPIQMVGLPTVLLGRDMIGIAPTGQGKTIVFLLPALV 196

Query: 61  TLLAE--NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
             +    N        PLA+ I P+         +         +  ++ IGG+ + ++ 
Sbjct: 197 MAIEHEMNMPLFRGEGPLAIIIVPSTYELACYYSQKLQEAGYPQIRCSLSIGGMDMMQQI 256

Query: 119 RDLQNGAHIVVG----------------------TPGRLCDHIRGKGLNISHLKAVVLDE 156
             ++ G H++                        TPGR  D +  +  N++  + +VLDE
Sbjct: 257 AQVREGVHLIKYYGLMNNTFEIYEVVELQLDMVGTPGRTSDMVDKQKFNMNLCRYIVLDE 316

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
           AD +LD+ F  +I  I+D  P  R+ L+FS+T+   +   AK    D + VN+    + +
Sbjct: 317 ADRLLDMIFEKEIRNIIDHVPGARQTLLFSSTMPKKVQDFAKQALIDPIIVNVGRAGQVN 376

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++      V   ++   +++ L+       ++FC     V    + L      V +L G
Sbjct: 377 LNVIQEVEYVKQEEKLQYLISCLQKTKPP-VLIFCDKSNDVDDIHEYLLLKGIDVTSLHG 435

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q+ER+ A++  +  +  V +ATD+ A+G+D P+++ VI+ ++    E+ +HR GRTG
Sbjct: 436 GKKQEERTKAMKEFQQSQKDVLVATDIGAKGLDFPNVQHVINFDMPKEIESYVHRIGRTG 495

Query: 337 RAGRKGMSVFVI----PQNMQRRAERLFREANVSVV 368
           R G+ G +   +     +N+    + L  EA   + 
Sbjct: 496 RLGKTGRATTFVNKQQDENILSDLKMLLMEAKQPIP 531


>gi|225430261|ref|XP_002285072.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 428

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVT 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L + +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   + Q+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|221131178|ref|XP_002164853.1| PREDICTED: similar to BAT1 [Hydra magnipapillata]
          Length = 433

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 175/388 (45%), Gaps = 17/388 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   D++  A++G GKT  F LA    L   +
Sbjct: 54  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDIVCQAKSGMGKTAVFVLATLQQLEPVD 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDLQNG 124
            + S       L ++ TRELA QV +E E               G       E+    N 
Sbjct: 114 SQVS------VLVMSHTRELAFQVSKEYERFSKYLPNTKVAVFFGGLSVKKDEQTLKTNC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K LN+ H+K  +LDE D+ML+    R D++ I   +P +++++
Sbjct: 168 PHIVVGTPGRILALARDKVLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM 227

Query: 184 MFSATISPAIT-TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT++  +     K  Q                 +      +  ++++  + ++L   
Sbjct: 228 MFSATLNKEMRLVCKKFMQDPMEVYVDDETKLTLHGLTQHYCKLKDNEKNRKLFDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  +       + +L E  F  +A+   + Q+ER +  +  +D + R+ +AT+
Sbjct: 288 EFNQVIIFVKSVQRCIALSNLLVEQNFPAIAIHRSMPQEERISRYRQFKDFQKRILVATN 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-----E 357
           +  RG+D+  + +V++ ++  + +  LHR  R GR G KG+++  +      +      +
Sbjct: 348 LFGRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGLAISFVSDEEDAKVLNGVQD 407

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQR 385
           R   E NVS +         I   +AQR
Sbjct: 408 RF--EVNVSELPAEIDVSTYIEGYEAQR 433


>gi|218709165|ref|YP_002416786.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
 gi|218322184|emb|CAV18298.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
          Length = 418

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 115/351 (32%), Positives = 189/351 (53%), Gaps = 6/351 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q+A++   +  KDVL  AQTGSGKT+AFGL L +++  +       +   A+ 
Sbjct: 26  FNKPTEIQQAVIPTIIAGKDVLALAQTGSGKTLAFGLPLLNSIKHD------VNELQAII 79

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I PTRELA QV + LE +     +      GGV +  +++ L     +V+ TPGRL   I
Sbjct: 80  IVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVI 139

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   L ++  K+++LDEAD +LD+GF  D++ I+ + PKK + L+FSAT+   + +  + 
Sbjct: 140 QENKLELTQCKSIILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEA 199

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              + V+V    EN   + I+    LV    +  A++ +L  H     +VF   + +   
Sbjct: 200 LLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADA 259

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            TK L++    V AL G  +Q+ER  AL+  ++G+ RV IATDV ARGI +  L +VI+ 
Sbjct: 260 LTKRLSKAKISVNALHGNKNQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINF 319

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           +L S+    +HR GRT RAG  G ++ ++  +       +    N  ++ +
Sbjct: 320 DLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAIRTLTNKPLMLQ 370


>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 464

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/473 (26%), Positives = 207/473 (43%), Gaps = 37/473 (7%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK F ++     + +++ + GY   T +Q   +   L  KD++  AQTG+GKT  F L +
Sbjct: 1   MK-FADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPM 59

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     R   A  P +L + PTRELA QV    E       + +A+ IGGV +  + 
Sbjct: 60  IDILAHGRRR---ALMPRSLILEPTRELAAQVAENFEKYGKNHDLKMALLIGGVQMGDQV 116

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + LQ G  +++ TPGRL D      + ++  + +V+DEAD MLD+GF  DIE I    P 
Sbjct: 117 KALQEGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRMLDMGFIPDIENICSKLPT 176

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
            R+ L+FSAT+ P I  LA  +  +   + +A     +++I    V      +   + ++
Sbjct: 177 TRQTLLFSATMPPPIKKLADKFLSNPKSIEVARPAATNTNIAQFKVRSTTRQKREVLRHL 236

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           LR      AI+F + + +V    K L  H F    + G++ Q  R+  LQ  +DG   + 
Sbjct: 237 LRTDNVSTAIIFANRKTTVRELAKSLQRHGFAAGEIHGDMDQSARNAELQKFKDGEISIL 296

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
            A+DVAARG+D+  +  V + +   +P++ +HR GRTGR G  G +  ++        E 
Sbjct: 297 CASDVAARGLDVKGVSHVFNFDTPWHPDDYVHRVGRTGRGGATGRAFTLVSDEDSESIEN 356

Query: 359 LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAA 418
           + +     +                      P F   + G E++      A+ D E    
Sbjct: 357 VEKLQGTKI----------------------PEFKVELPGKEERKPRESGAERDEEP--- 391

Query: 419 GFLRIHRAGLCAPEEITPVSLVSGRD-RFRDDSRAFKVGGGSRDNFKGSSWFS 470
                 R               + R+ R   ++R  +     R   +  + + 
Sbjct: 392 -----KRGSRRERPAREERKPRAERESRPEREARPEREVRAERAPRREPTPYR 439


>gi|194015973|ref|ZP_03054588.1| ATP-dependent RNA helicase [Bacillus pumilus ATCC 7061]
 gi|194012328|gb|EDW21895.1| ATP-dependent RNA helicase [Bacillus pumilus ATCC 7061]
          Length = 380

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 107/361 (29%), Positives = 185/361 (51%), Gaps = 8/361 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I E     G+   T++QE        ++DV+  + TG+GKT+A+ L L + +      
Sbjct: 13  PFIQENFQAAGFEKPTAIQEKTAEWITEKRDVIAESPTGTGKTLAYVLPLLNKIDVN--- 69

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  L +AP+REL +Q+   ++     + +     IGG ++ +++  L+   +IV
Sbjct: 70  ---IKHPQVLILAPSRELVMQIFDVVQEFKQGSDIKAISLIGGANIKKQQEKLKKHPNIV 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
           V TPGR+ + I+ K L +  +K +VLDEAD++L       I+ I+ S+ K+R++L FSAT
Sbjct: 127 VATPGRVQELIKIKKLKMHEVKTIVLDEADQLLVPEHMKTIQAIIKSTLKERQILCFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           +      L K    +   + IA    +   + +  +L    D+   ++  L       A+
Sbjct: 187 LKDETVQLIKEMTTEPEVLKIARSEEEAQKVGHYYLLCDQRDK-VKLLQKLSRLEDMQAL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF     ++S + + LA H   +  L  E  + ER+  L+        + +ATD+AARGI
Sbjct: 246 VFVRDITNLSIYAEKLAYHHVDLGVLHSEAKKAERAIILKEFEQREFPLLLATDIAARGI 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  VIHA+L  N E  +HRSGRTGRAG++G  + ++    Q   +++ ++ N+S+ 
Sbjct: 306 DIDDLPYVIHADLP-NEEGYIHRSGRTGRAGKEGAVISLVTPQEQSMLKKMAKKLNLSLQ 364

Query: 369 W 369
            
Sbjct: 365 E 365


>gi|156398602|ref|XP_001638277.1| predicted protein [Nematostella vectensis]
 gi|156225396|gb|EDO46214.1| predicted protein [Nematostella vectensis]
          Length = 395

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 167/374 (44%), Gaps = 15/374 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +   L+E G+   + +Q   +       D++  A++G+GKT  F +     ++ E 
Sbjct: 28  LSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENVITE- 86

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                ++    + + PTRE+AVQV   +  +      +      G     E +      H
Sbjct: 87  -----SNCIQIIILTPTREIAVQVKDVICAIGCHYDGLACKVFIGGISLEEDKKALKSCH 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I VGTPGR+   I  K L    ++  +LDEAD++LD  F+  I +I  + P+ ++M+ FS
Sbjct: 142 IAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDESFQQQINWIFSALPENKQMMAFS 201

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD--------RDNAIVNI 238
           AT    +    K Y  +   V + + +     I     LV            + + ++ +
Sbjct: 202 ATYPEVLANHLKKYMTEPTFVRLNAADPSLQGIKQFYSLVRFHPLPHKTFQEKVDGLIKL 261

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
           L        +VF + +      +  L    +    ++G  +Q +R  A++ ++    R+ 
Sbjct: 262 LSSVNFNQCLVFSNYQIRAKSLSDTLCRKGWPSTFIAGYQTQAKRLEAMEKLKSFHCRIL 321

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAE 357
           I+TD+ ARGID  ++ LV++ ++  N E  LHR GR GR G +GM+V  +     +R   
Sbjct: 322 ISTDLTARGIDAENVNLVVNMDVPHNGETYLHRIGRAGRFGTEGMAVTYVANGKEERELR 381

Query: 358 RLFREANVSVVWEP 371
            + R  +V +   P
Sbjct: 382 DIERSIDVKMELLP 395


>gi|71051290|gb|AAH99392.1| Eif4a1 protein [Mus musculus]
          Length = 405

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 37  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 96

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 97  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 150

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 151 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 210

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 211 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 270

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 271 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 330

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 331 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 390

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 391 NTSIEEMPLNVADLI 405


>gi|149188012|ref|ZP_01866307.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
 gi|148838000|gb|EDL54942.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           shilonii AK1]
          Length = 406

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 126/393 (32%), Positives = 190/393 (48%), Gaps = 12/393 (3%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M   E  +   + +A+    + + T +Q   +   + + DVL  AQTGSGKT+AFGL L 
Sbjct: 1   MSFSELTLSSALIDAIPSE-FSHATHIQTLAIPAIIAQHDVLALAQTGSGKTLAFGLGLI 59

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             LL    +        AL + PTRELA QV   ++ + A  G  VAV  GG  V  +  
Sbjct: 60  EQLLNNEIK-------QALILVPTRELAKQVTETIDPIVALLGYSVAVVCGGEDVEPQVG 112

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     IVV TPGRL D +  + ++   ++ VVLDE D +LD+GF  DI+ IL+    +
Sbjct: 113 QLNAAPEIVVATPGRLLDIMNKQLVDTQRIETVVLDEVDRLLDMGFWPDIQRILNGLRHR 172

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
           ++ LMFSAT+S  +         + +RV     N     I     LV    + N ++  +
Sbjct: 173 KQTLMFSATLSEQLEAKVTTLLNNPIRVVANKTNSVVEQIAETLYLVNKGSKANVLIKQI 232

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
             H     +VF   R +     K L +      AL G   Q ER   LQ  + G  +V I
Sbjct: 233 TEHQWPQVLVFIGARDNADALCKKLNKAGITSGALHGNKEQTERERTLQAFKQGEIQVLI 292

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+ ARGI + +L +VI+ EL S+P   +HR GRT RAG+ G ++ ++        E +
Sbjct: 293 ATDILARGIHVDNLPVVINYELPSDPSVYVHRVGRTARAGKTGQALSLVCHGETEYLEAI 352

Query: 360 FREANVSVVWEPA---PSVEAIRERDAQRILQD 389
            +  + S+V E     P  +     +++R  +D
Sbjct: 353 RQLTSRSLVLEELADFPVTDKPSTGESKRPKRD 385


>gi|269968536|ref|ZP_06182542.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
 gi|269826871|gb|EEZ81199.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
          Length = 372

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/366 (29%), Positives = 186/366 (50%), Gaps = 7/366 (1%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     + E L    Y   T +Q   +   L  KD++  A TGSGKT AF L +  
Sbjct: 9   TFADLGLIPTLVERLEALEYSQPTPIQSRSIPDILEGKDIIGGANTGSGKTAAFSLPILQ 68

Query: 61  TLLAENDRFSPASAPLA-LAIAPTRELAVQVGRELEWLYAKTGVVV--AVCIGGVSVHRE 117
            ++ +++  +     ++ L + PTRELA QV   ++         +      GGVSV+ +
Sbjct: 69  KIVQQDESNNRRGNFVSHLILVPTRELASQVAYNVKSYSYHLRDKIKTVAVFGGVSVNPQ 128

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
              L+ G  I+V TPGRL D +    + +  +K +VLDEAD ML LGF +++  IL   P
Sbjct: 129 MLALRGGCDIIVATPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLP 188

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K++ L+FSAT    +TTLA+   +D V V + S          R   V   ++   + +
Sbjct: 189 EKKQTLLFSATFPDKVTTLAQQLLRDPVEVQLQSAEASTL--VQRVFSVNKGEKTAVLAH 246

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +++ H  +  ++F + + + +   + L++         G+  Q  R+  L   + G  +V
Sbjct: 247 LIKQHQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFKSGEIQV 306

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IATD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+ + +I  +     +
Sbjct: 307 LIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFK 366

Query: 358 RLFREA 363
            + +E 
Sbjct: 367 VIEKEK 372


>gi|170932536|ref|NP_031942.2| ATP-dependent RNA helicase DDX19A [Mus musculus]
 gi|15030051|gb|AAH11270.1| Ddx19a protein [Mus musculus]
 gi|26340198|dbj|BAC33762.1| unnamed protein product [Mus musculus]
 gi|74138902|dbj|BAE27252.1| unnamed protein product [Mus musculus]
 gi|148679533|gb|EDL11480.1| mCG132574 [Mus musculus]
          Length = 478

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|148979305|ref|ZP_01815437.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
 gi|145961845|gb|EDK27137.1| DNA and RNA helicase [Vibrionales bacterium SWAT-3]
          Length = 424

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/357 (32%), Positives = 184/357 (51%), Gaps = 9/357 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q+A++   +  +DVL  AQTGSGKT+AFGL L + +   +++        AL 
Sbjct: 20  FNKPTEIQQAVIPTIVSGRDVLALAQTGSGKTLAFGLPLLNNIDQGSNK------LQALV 73

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I PTRELA QV   L+ +     +      GG +   +++ L     I + TPGRL   I
Sbjct: 74  IVPTRELASQVTESLKPIATALSIKTVTLTGGRNADEQQQQLSTAPQIAIATPGRLLALI 133

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   L ++   ++VLDEAD ++D+GF  DI+ I  + P KR+ L+FSAT+ P + + A+ 
Sbjct: 134 KSGELELAQCTSLVLDEADRLIDMGFWPDIQAITAALPTKRQSLLFSATLPPELVSQAET 193

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              +  ++    EN     I+    LV    +  A++ +L  +     +VF   + +   
Sbjct: 194 LLSNPKKITTHKENSVVEAIEETLYLVNKGSKAQALIALLNQNPWPQVLVFIGAKDNADA 253

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            TK L +    V AL G  SQ+ER+ AL   ++G  RV IATDV ARGI +  L +VI+ 
Sbjct: 254 LTKRLNKAKISVSALHGNKSQEERAQALDSFKNGDTRVLIATDVMARGIHIDQLPIVINF 313

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           EL  +    +HR GRT RAG  G ++ ++  +       +    N ++   P  S+E
Sbjct: 314 ELPPHAATYVHRVGRTARAGSTGCAISLVSHSETDYLTAIRTLTNKTL---PLQSLE 367


>gi|54696620|gb|AAV38682.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|61367705|gb|AAX43035.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|224036248|pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036250|pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036251|pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
 gi|224036253|pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
          Length = 388

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 20  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 79

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 80  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 133

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 134 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 193

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 194 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 253

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 254 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 313

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 314 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 373

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 374 NTSIEEMPLNVADLI 388


>gi|184200059|ref|YP_001854266.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
 gi|183580289|dbj|BAG28760.1| putative DEAD-box RNA helicase [Kocuria rhizophila DC2201]
          Length = 535

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 133/390 (34%), Positives = 197/390 (50%), Gaps = 9/390 (2%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE++  P+ +   L+  G      +QE  L   L  +DVL   +TGSGKTVAF L L +
Sbjct: 4   SFEDLGVPEALSADLARVGITEAFPIQEKTLPDSLAGRDVLGRGRTGSGKTVAFALPLVA 63

Query: 61  TLLAENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L       S AS     P  L +APTRELA Q+ R +  L    G+   V  GGVS  R
Sbjct: 64  RLAGMAPGASRASRRAHRPTGLVLAPTRELATQIDRTVAPLAKAAGLNTTVIFGGVSQKR 123

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           + + L +G  IVV  PGRL D I+   L +  ++  VLDEAD M D+GF   +  IL  +
Sbjct: 124 QEKALADGVDIVVACPGRLEDLIKQGLLTLDDVRVTVLDEADHMADMGFLPVVTRILAKT 183

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  + L+FSAT+   +  L K + +D V  +  +     + +D++ ++    D+    +
Sbjct: 184 PKGSQRLLFSATLDNGVDVLVKKFLQDPVLHSADNAQAAVTTMDHQVLVTHADDKQA--L 241

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                 G    ++F  T+    +  K L++     V L G LSQ  R   L    DG  R
Sbjct: 242 IEALASGTGRRMMFTRTKYRAKKMAKKLSQAGIPAVDLQGNLSQGARDRNLGAFSDGDVR 301

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V +ATDVAARG+ + D+ELV+H +  +  ++ LHRSGRT RAG  G  + +     +   
Sbjct: 302 VLVATDVAARGVHVDDVELVVHIDPPAEHKSYLHRSGRTARAGASGAVITIATTEERSDV 361

Query: 357 ERLFREANVSV-VWEPAPSVEAIRERDAQR 385
           ++L ++A V   V E  P  E ++E   +R
Sbjct: 362 DKLMKKAGVKPRVDEVRPDSEVVKELVGER 391


>gi|301764042|ref|XP_002917443.1| PREDICTED: probable ATP-dependent RNA helicase DDX10-like
           [Ailuropoda melanoleuca]
          Length = 926

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 124 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 183

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 184 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 241

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 242 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 301

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 302 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 361

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 362 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 421

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +
Sbjct: 422 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEK 481

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 482 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 541

Query: 413 PE 414
            E
Sbjct: 542 KE 543


>gi|168035593|ref|XP_001770294.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678511|gb|EDQ64969.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 425

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 51  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVT 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 111 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNEC 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++  ++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 165 PHIVVGTPGRILGLARDKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVM 224

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 225 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLGEVEKNRKLNDLLDAL 284

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 285 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATD 344

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 345 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASPSDSDVLNQVQE 404

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 405 RFEVDIKELP 414


>gi|29830666|ref|NP_825300.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607778|dbj|BAC71835.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 747

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 210/443 (47%), Gaps = 8/443 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL   + L    
Sbjct: 59  LPEGVVRKLAQNGVTAPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLARL---A 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P A+ + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 116 GGHTDKKKPRAVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 175

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++++++  VLDEAD+M DLGF  ++  + D  P   + ++FS
Sbjct: 176 VLVATPGRLRDIINRGACSLANVEVAVLDEADQMSDLGFLPEVTELFDQIPAGGQRMLFS 235

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V    +D A V          
Sbjct: 236 ATMENEISTLVKRYLTNPVTHEVDSAQGNVTTMSHHILVV--KPKDKAPVTAAIASRKGR 293

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 294 TIIFVRTQLGADRIAEQLRDAGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 353

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 354 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 413

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHRA 426
                  S  A     A+  +     +  +Q  +        A+ +  ++     R  R 
Sbjct: 414 AARHIINSGTAFEPEVAE--ITGARSMTEVQA-QSAGDAAQQAEREVTQLTKELERAQRR 470

Query: 427 GLCAPEEITPVSLVSGRDRFRDD 449
                 E   +   + R+R  D 
Sbjct: 471 AAELRGEADRLVARAARERGEDP 493


>gi|73966209|ref|XP_851852.1| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 2 [Canis familiaris]
          Length = 406

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|66551115|ref|XP_623285.1| PREDICTED: eukaryotic initiation factor 4A-like isoform 2 [Apis
           mellifera]
          Length = 423

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 117/374 (31%), Positives = 197/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P +R  DV+  AQ+G+GKT  F +++   +   
Sbjct: 56  NLKEELLRGIYAYGFEKPSAIQQRAILPCIRGHDVIAQAQSGTGKTATFSISILQQID-- 113

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL +APTRELA Q+ + +  L          CIGG +V  + R L  G 
Sbjct: 114 ----TTIKECQALILAPTRELAQQIQKVVIALGDFMHAECHACIGGTNVREDMRKLDQGV 169

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVGTPGR+ D I  + L  S +K  VLDEADEML  GF+D I  +    P + ++++ 
Sbjct: 170 HIVVGTPGRVYDMISRRALRASSIKLFVLDEADEMLSRGFKDQIHDVFKLLPHEVQVILL 229

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHGA 244
           SAT+   +  ++K + ++ +R+ +  E      I      +     +   + ++      
Sbjct: 230 SATMPSDVLDVSKCFMRNPIRILVKKEELTLEGIKQFFIYVEREEWKFETLCDLYDTLSI 289

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 290 TQAVIFCNTRRKVDWLTESMRTRDFTVSAMHGDMEQKERDLIMRQFRTGSSRVLITTDLL 349

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++ ++  + +R  + + +  N
Sbjct: 350 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINLVTDDDKRTLKDIEQFYN 409

Query: 365 VSVVWEPAPSVEAI 378
            S+   P    + I
Sbjct: 410 TSIEEMPMNVADLI 423


>gi|307193157|gb|EFN76062.1| ATP-dependent RNA helicase DDX54 [Harpegnathos saltator]
          Length = 772

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 6/365 (1%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF 69
            + + + +RGY   T +Q   +   L  +D++  A+TGSGKT  F + L   L     + 
Sbjct: 45  PVLKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRLAK- 103

Query: 70  SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVV 129
              +   AL ++PTRELA+Q  + ++ L   TG+  AV +GG S+  +   +     I+V
Sbjct: 104 ---TGARALILSPTRELALQTLKFIKELGKFTGLKAAVILGGDSIDDQFSAIHGNPDIIV 160

Query: 130 GTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
            TPGR         L + +++ VV DEAD + ++GF + I  I++  P+ R+ L+FSAT+
Sbjct: 161 ATPGRFLHICVEMDLQLKNVEYVVFDEADRLFEMGFGEQIHEIVNRLPESRQTLLFSATL 220

Query: 190 SPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGAKNA 247
              +   AK    D V + +  E++    ++   +     ++   ++             
Sbjct: 221 PKVLVDFAKAGLSDPVLLRLDVESKLPEGLELSFITCRPEEKLAVLLCLLKRVIKEDSQI 280

Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
           I+F  T   V    ++L +       +   L    R       + G+A+V I TDVAARG
Sbjct: 281 IIFAETMHHVEYIHQILDKAKIINTFIYSNLDPSARKINTAKFQTGKAKVLIVTDVAARG 340

Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           ID+P L+ VI+    +  +  +HR GR  RAGR G +  ++  +       L       +
Sbjct: 341 IDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSVDEYPYLLDLHLFLGRPL 400

Query: 368 VWEPA 372
           +  PA
Sbjct: 401 LIVPA 405


>gi|193641157|ref|XP_001946607.1| PREDICTED: probable ATP-dependent RNA helicase DDX23-like
           [Acyrthosiphon pisum]
          Length = 721

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 189/397 (47%), Gaps = 28/397 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           I   I E + + GY   T +Q   +    + +D++  A+TGSGKT+A+ + L     +L 
Sbjct: 299 IKSEIMEIIEKVGYKEPTPIQRQAIPIGFQNRDIIGVAETGSGKTLAYLIPLIEWIQSLP 358

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                      P ++ +APTRELA Q+  E        G+   V +GG+S   +   L+ 
Sbjct: 359 KMEREEDVDQGPYSIILAPTRELAQQIEEETLKFGQPLGIRTVVVVGGLSREEQGFRLRL 418

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P      
Sbjct: 419 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 478

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+ PA+  LA+ Y +    V I S  +    
Sbjct: 479 DNEDAEDESKLLANYYTKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGKPVER 538

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
            +    +++ +D+   ++ IL        I+F + +       K L +  +    L G  
Sbjct: 539 TEQIVHMMSENDKRKRLIEILSRKVDPPIIIFVNQKKGADVLAKGLEKLGYNACTLHGGK 598

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA 338
            Q++R  AL  ++ G   + +ATDV  RGID+ D+ +VI+ +++ + E+  HR GRTGRA
Sbjct: 599 GQEQREFALASLKGGVKDILVATDVVGRGIDIKDVSMVINYDMAKSIEDYTHRIGRTGRA 658

Query: 339 GRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           G+ G+++  + ++       L +    S      P +
Sbjct: 659 GKTGVAISFLTKDDSPLFYDLKQVIQASPASTCPPEL 695


>gi|227513124|ref|ZP_03943173.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
 gi|227083699|gb|EEI19011.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
          Length = 453

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 29/476 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   I  AL +  +   T VQE ++   L+ +DV+  + TGSGKT AF L +
Sbjct: 1   MTQFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVH 115
            + +  + D         A+   P+RELA Q+    + L   +   +++     G     
Sbjct: 61  FNDIDPKIDEV------QAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E +  +    ++VGTPGR+ D I+  GL++     +V+DEAD  LD+GF D ++ I  S
Sbjct: 115 QEDKLKKEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K  +M++FSATI   IT   K Y  + V   I   +     ID   +     D++  I
Sbjct: 175 FGKHVQMMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L        ++F +TR  V   T+ L     +V  + G +  +ER   ++ +++   
Sbjct: 235 YHLLTIGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDF 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  +ATD+AARGID+  +  VI+ ++ + + E  +HR GRTGR G  G S+ +   + ++
Sbjct: 295 QFVVATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEK 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E       + + ++P             + L++   +D+     ++       K DP 
Sbjct: 355 EVEE---LEGMGIHFKP-------------KALKNHEIVDTYDRKRRQTHRKKREKLDPT 398

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            I     +  +       +I  +S+    +  R  S+  +     +   + S  + 
Sbjct: 399 MIGLIKKKKKKIKPGYKRQIK-MSISRKEEMDRRVSKREESRAKRKQRKQSSKRYK 453


>gi|225451679|ref|XP_002276467.1| PREDICTED: similar to DEAD/DEAH box helicase family protein [Vitis
           vinifera]
          Length = 540

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 163/371 (43%), Gaps = 6/371 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+PQ + + +   GY   T VQ   +   L  K++LVSA TGSGKT +F + + S   + 
Sbjct: 143 NLPQKLLQNIEAAGYEIPTPVQMQAIPAALVGKNLLVSADTGSGKTASFLVPIVSRCTSI 202

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               SP    PLA+ + PTREL +QV  + + L        A+ +GG ++ R+   +Q G
Sbjct: 203 RPDHSPNQKNPLAMVLTPTRELCMQVEEQAKLLGKGLPFKTALVVGGDAMPRQLHRIQQG 262

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             ++VGTPGRL D +    + +  +  +VLDE D ML+ GFRD +  I  +  + + ++ 
Sbjct: 263 VELIVGTPGRLIDLLSKHEIELDDVFMLVLDEVDCMLERGFRDQVMQIYRALSQPQVLMY 322

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNILRYH 242
            +          +   +   V     S     +               +   I+   ++ 
Sbjct: 323 SATISQEVEKVASSMAKDIIVISVGKSNRPNIAVKQLAIWVESKQKKQKLFDILTSKQHF 382

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                +   S   +      +      + +++ GE S +ER   +     G   V +AT 
Sbjct: 383 TPPVVVFVGSRLGADLLTEAITITTGLKALSIHGEKSMKERREIMSSFLVGEVPVMVATG 442

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERL 359
           V +RG+DL  +  VI  ++ ++ +  +H+ GR  R G +G ++  + +  +        +
Sbjct: 443 VLSRGVDLLSVRQVIVFDMPNSIKEYVHQIGRASRLGEEGTAILFLNEENRNLFPELVEI 502

Query: 360 FREANVSVVWE 370
            + +  ++  E
Sbjct: 503 LKSSGAAIPRE 513


>gi|323452336|gb|EGB08210.1| hypothetical protein AURANDRAFT_26477 [Aureococcus anophagefferens]
          Length = 480

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/425 (25%), Positives = 190/425 (44%), Gaps = 17/425 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F+ +P      + L+  G+  +  +Q   +   L  +DVL +A+TGSGKT+AF +     
Sbjct: 35  FDALPLSSRTLQGLTSGGFETMKPIQRCAIPHALAGRDVLGAARTGSGKTLAFLVPALEA 94

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     R+S      AL I+PTRELA Q+   L    +   V   +  GG       RD 
Sbjct: 95  LY--RHRWSAGDGLGALIISPTRELAAQIFDVLRKAGSCHDVSAGLITGGGRDFDAERDR 152

Query: 122 QNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                ++V TPGR+  H       + + L A+V+DEAD ++D+GF   ++ ++   P++R
Sbjct: 153 VGRMCLLVATPGRVLQHAEESPAFDATGLLALVVDEADRVVDMGFAAQVDSLVAYLPQQR 212

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVN----IASENRQHSDIDYRAVLVALSDRDNAIV 236
           + ++FSAT++               R+       +       +D   V   L ++ +A+ 
Sbjct: 213 QTMLFSATLAGFAGAPEAALSSRLGRLRGLASQPTGAPTPKALDQCRVTCGLEEKMDALY 272

Query: 237 NILRYHGAKNAIVFCSTRASVSR--FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
             ++ H     IVF S+ A            +    ++AL G+ SQ +R+   +  +   
Sbjct: 273 AFVKAHLKCKTIVFVSSCAQARFLLEALRGTQPGVPLLALHGKQSQGKRTATFEDYKRKT 332

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATDVAARG+D+PD++ V+  +   + E  +HR+GR  R GR G ++ V+  + + 
Sbjct: 333 AAVLFATDVAARGLDVPDVDWVVQLDAPEDAEAYVHRAGRAARNGRPGKAMLVLLPSEEP 392

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           R   L   A + V         AI  +      +    L + + + K +     + +   
Sbjct: 393 RMAELLAAAKIPVKKV------AINGKRTFSAAKHVEALVAARPEVKALAQKCFSAYVRS 446

Query: 415 KIAAG 419
            + A 
Sbjct: 447 VVLAA 451


>gi|320159302|ref|YP_004191680.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
 gi|319934614|gb|ADV89477.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
          Length = 412

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 123/411 (29%), Positives = 194/411 (47%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA QV   +  +    G+      GGV   ++ + L    
Sbjct: 66  PEQ-------EALILVPTRELATQVSEAINQVGQSIGLNAVCLCGGVDKEQQLQALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I      +R+  MF
Sbjct: 119 HILVATTGRLVDLANNGL-DLSNIHYLVLDEADRLLDMGFWPDVQNIAGQISSQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK   +   +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF   + +     K L +      AL G+ SQ ER  AL   + G+ +V IATD+ A
Sbjct: 238 QALVFIGAKENADGLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQTQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FR 361
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++          +     R
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVALSLVCHGEMDALSAIRHLTQR 357

Query: 362 EA------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           E          V  +P+   S  A R++ A R  Q+   +   Q   K+  
Sbjct: 358 ELPVQDLEGFPVTDKPSTGESKRAPRDKKANRRTQNKKSVKQFQSKAKRSA 408


>gi|158300210|ref|XP_001689233.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|158300212|ref|XP_320199.4| AGAP012358-PA [Anopheles gambiae str. PEST]
 gi|157013048|gb|EDO63299.1| AGAP012358-PB [Anopheles gambiae str. PEST]
 gi|157013049|gb|EAA00143.4| AGAP012358-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 24/386 (6%)

Query: 1   MKIFENIP------QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ F+ +         +   +    Y   T VQ   +   L+   +   A TGSGKT AF
Sbjct: 138 IESFDQLSTDYGVSNRLVANIQSC-YSTPTPVQMQAIPILLKTHSLHACAPTGSGKTAAF 196

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L     +        AL I PTRELA Q  RE   L  +  +   V       
Sbjct: 197 LIPILHHL-----KKPMKCGFRALIICPTRELAKQTQREALRLGDEMNLRTHVIHMVDDP 251

Query: 115 HRERRDLQ--NGAHIVVGTPGRLCDHIRGKGL-----NISHLKAVVLDEADEMLDLGFRD 167
            +            I+V TP R+C  +          NI  +     D+  E     FRD
Sbjct: 252 KKCDYSFASGRSYDILVTTPNRICYLLSQNPPKIDLSNIQWVVIDEADKLFEDSKNSFRD 311

Query: 168 DIEFILDSSPKKRRMLM-FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            ++ +L +     + +  FSAT +  +         + +R +I   N     +D + +  
Sbjct: 312 QLDTVLTACNNPSKTIALFSATQTRDVNLWVAKNVPNRIRFSIGLINGAVELVDQKLLFT 371

Query: 227 ALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                +  A   ++        +VF  ++    +    L      V  +  + +Q+ER N
Sbjct: 372 GSESGKLLAFREMVAQGLHPPVLVFVQSKDRAQQLFTELIYDGLNVDVIHSDRTQRERDN 431

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  R+G+  + I T++ +RGID   + LV++ +   +  + +HR GRTGRAGR G +V
Sbjct: 432 VVRAFREGKIWILICTELMSRGIDFKGVNLVVNYDFPPSTISYVHRIGRTGRAGRPGKAV 491

Query: 346 FVIPQNM---QRRAERLFREANVSVV 368
               ++     +   +L + A   V 
Sbjct: 492 TFFTKDDTVNLKSIAQLIKSAGGEVP 517


>gi|118597486|sp|Q0UWC8|PRP28_PHANO RecName: Full=Pre-mRNA-splicing ATP-dependent RNA helicase PRP28
          Length = 746

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 27/404 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P  +   +   GY   ++VQ A +   L+ +D++  A TGSGKT +F L L   +  
Sbjct: 332 SGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQ 391

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  + A  P A+ +APTRELA Q+  E     A  G   AV +GG S+  +   ++
Sbjct: 392 LPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMR 451

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GA IV+ TPGRL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P     
Sbjct: 452 DGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEK 511

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------------YR 222
               A   P         Q       + +   + +                        R
Sbjct: 512 PDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQR 571

Query: 223 AVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +   ++    +  +          IVF + + +     + +    F  V L G  +Q
Sbjct: 572 VEHIQGEEKRKKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQ 631

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL  +R+ R  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 632 EQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGK 691

Query: 341 KGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
            G+++              +++  ++ +S V E     EA +++
Sbjct: 692 SGVAITFWGNEDADVLYDLKQMLTKSQISKVPEDLRKHEAAQQK 735


>gi|73955178|ref|XP_536583.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Canis familiaris]
          Length = 871

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 188/411 (45%), Gaps = 13/411 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   + +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYIWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           + V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +
Sbjct: 366 SAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEK 425

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
              ++L ++  V V        + I   D Q+ L+  L  D    +  +  
Sbjct: 426 GMVQQLLQK-KVPVKEIKINPEKLI---DVQKKLESFLAQDKDLKERAQRC 472


>gi|227510196|ref|ZP_03940245.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190401|gb|EEI70468.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 453

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 29/476 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   I  AL +  +   T VQE ++   L+ +DV+  + TGSGKT AF L +
Sbjct: 1   MTQFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVH 115
            + +  + D         A+   P+RELA Q+    + L   +   +++     G     
Sbjct: 61  FNDIDPKIDEV------QAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E +  +    ++VGTPGR+ D I+  GL++     +V+DEAD  LD+GF D ++ I  S
Sbjct: 115 QEDKLKKEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K  +M++FSATI   IT   K Y  + V   I   +     ID   +     D++  I
Sbjct: 175 FGKHVQMMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L        ++F +TR  V   T+ L     +V  + G +  +ER   ++ +++   
Sbjct: 235 YHLLTVGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDF 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  +ATD+AARGID+  +  VI+ ++ + + E  +HR GRTGR G  G S+ +   + ++
Sbjct: 295 QFVVATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEK 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E       + + ++P             + L++   +D+     ++       K DP 
Sbjct: 355 EVEE---LEGMGIHFKP-------------KALKNHEIVDTYDRRRRQTHRKKREKLDPT 398

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            I     +  +       +I  +S+    +  R  S+  +     +   + S  + 
Sbjct: 399 MIGLIKKKKKKIKPGYKRQIK-MSISRKEEMDRRVSKREESRAKRKQRKQSSKRYK 453


>gi|126644819|ref|XP_001388126.1| U5 snRNP 100 kD protein [Cryptosporidium parvum Iowa II]
 gi|126117354|gb|EAZ51454.1| U5 snRNP 100 kD protein, putative [Cryptosporidium parvum Iowa II]
 gi|323509541|dbj|BAJ77663.1| cgd3_3690 [Cryptosporidium parvum]
          Length = 529

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 184/371 (49%), Gaps = 13/371 (3%)

Query: 13  EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN--DRFS 70
           E +   GY   T +Q   +   L+ +D++  A+TGSGKT+AF + L S +  +   D  +
Sbjct: 155 ELIRNIGYEKPTPIQMQCIPIGLKLRDMIGIAETGSGKTIAFLIPLISYVGNKPILDYKT 214

Query: 71  PASAPLALAIAPTRELAVQVGRELEWLYAKTG----VVVAVCIGGVSVHRERRDLQNGAH 126
               P  L +AP RELA+Q+  E + L  KT     +     +GG ++ ++   L+ G  
Sbjct: 215 SQEGPYGLILAPARELALQIEDEAQKLLNKTHELKRIRTLSIVGGRNIDQQAFSLRKGVE 274

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK--KRRMLM 184
           I++ TPGR+ D +      +     V+LDEAD M+DLGF+D + FILD  P   +R   M
Sbjct: 275 IIIATPGRMQDCLEKTLTVLVQCSYVILDEADRMIDLGFQDSLNFILDQIPPEIQRTTHM 334

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYH 242
           FSAT+   +  +AK Y    + V I         I      ++ + + + ++N    +  
Sbjct: 335 FSATMQKELENIAKRYLNSPINVTIGDIGAGKKSIQQILNFISENKKKSTLINTLNNKEL 394

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                IVF + +  V    + +  H F+  +L G   Q+ R N+L + + G   + ++TD
Sbjct: 395 AVPPIIVFLNQKKMVDIVCREIVSHGFKATSLHGGKMQEVRENSLNLFKSGVFDILVSTD 454

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERL 359
           VA RGID+ ++ LVI+ +   + +   HR GRTGRAG+ G+++  I           +++
Sbjct: 455 VAGRGIDINNINLVINYDFPKSIDTYTHRIGRTGRAGKNGIAISFITPEDSGLFPELKKI 514

Query: 360 FREANVSVVWE 370
              +N  +  E
Sbjct: 515 LLTSNNPIPNE 525


>gi|116491279|ref|YP_810823.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
 gi|116092004|gb|ABJ57158.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
          Length = 454

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 180/386 (46%), Gaps = 16/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+    +   T VQ+ I+ P +  +DV+  +QTGSGKT AF L + + L   
Sbjct: 9   NLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNGLDPS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---------VVVAVCIGGVSVHR 116
            +         A+  +P+RELA Q+ +                    +     G     +
Sbjct: 69  LEE------TQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQ 122

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            R+  +    IV+GTPGRL D +    L ++  +  V+DEAD  LD+GF +D++ I  + 
Sbjct: 123 IRQLERKQPQIVIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASAM 182

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +ML+FSATI   +T   K Y K+ +   I         ID   +     D++  I 
Sbjct: 183 PDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSKDKNEVIF 242

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L    +   +VF +T+  V      L     +   + G +  +ER   ++ ++    +
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIKKQEFQ 302

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARG+D+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +   + + + 
Sbjct: 303 YVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPDEEDKV 362

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   ++   +     + I  +D
Sbjct: 363 EELEK-LGINFQAKQLKDHQLIDVKD 387


>gi|299532536|ref|ZP_07045926.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
 gi|298719483|gb|EFI60450.1| hypothetical protein CTS44_17127 [Comamonas testosteroni S44]
          Length = 700

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 189/418 (45%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T+VQ   +   + E        D++VS+QTGSGKT AF L + 
Sbjct: 58  LAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAFLLPVL 117

Query: 60  STLLAE-----------------------------NDRFSPASA-------PLALAIAPT 83
            TL+ +                             N R  P +A       P AL + PT
Sbjct: 118 HTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGALVLCPT 177

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 178 RELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQRSMQ 237

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 238 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAMRVMHD 297

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                        + +  +          +  +   + + LR      AIVF ST+    
Sbjct: 298 GGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSINQAIVFASTQVECD 357

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 358 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 417

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR+G++V       +RR   +          E  P +E
Sbjct: 418 YGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTRQQFKAETIPGME 475


>gi|198426131|ref|XP_002127349.1| PREDICTED: similar to Ddx52 protein [Ciona intestinalis]
          Length = 538

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 171/416 (41%), Gaps = 27/416 (6%)

Query: 7   IPQVIGEALSER-GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +  +  + L+ER G+  L+ +Q   +   L  +++L  A TGSGKT+AF + + S LL  
Sbjct: 98  VHSICVKNLTERFGFSALSPIQMQAIPAMLDGREILACAPTGSGKTLAFLVPVVSHLLNV 157

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEW-----------LYAKTGVVVAVCIGGVSV 114
             +        AL ++PTRELA Q   E +               K  + + +    +  
Sbjct: 158 K-KTKKGKNIRALILSPTRELAEQTFSECKKLIRSENDEENEKIHKDLLNIRLMDKNLVK 216

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE--------MLDLGFR 166
               +  Q     ++ +      H+  +   I  L ++     DE          D  FR
Sbjct: 217 SFTEKKKQTCDIDLLISTPNRIIHLIKQETPILKLDSIEWLVVDESDKLFEDGKEDASFR 276

Query: 167 DDI-EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
           D +          K R  MFSAT +  +         + ++V +  +N   S +      
Sbjct: 277 DQLGRIYSACENPKIRRAMFSATFAHDVQQWCVLNMDNVLQVTVGGKNTATSSVKQELKY 336

Query: 226 VALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
           V     +  A+ +I+R   A  A+VF  ++         L      + A+ G+ + ++R 
Sbjct: 337 VGNEQGKLLAMQDIIRGGFAPPALVFVQSKERAKELYAELVYDGINIDAIHGDRTPEQRE 396

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
            A+Q +  G   V I T+   RG+D  ++ LV++ +  ++    +HR GRTGRAGR G +
Sbjct: 397 KAIQSLHAGTTWVMICTEHMGRGMDFQNVNLVVNYDFPNSAVTYIHRIGRTGRAGRTGRA 456

Query: 345 VFVIPQNMQ---RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQ 397
           + +     +   R    L +EA   V       ++ + + + ++  +     ++I+
Sbjct: 457 ITLFTDQDRALLRSIANLIKEAGCDVPEYML-KMKKMSKEERKKTAKTQTKRNTIR 511


>gi|73966207|ref|XP_536623.2| PREDICTED: similar to eukaryotic translation initiation factor 4A,
           isoform 1 isoform 1 [Canis familiaris]
 gi|50814|emb|CAA26842.1| unnamed protein product [Mus musculus]
 gi|50819|emb|CAA26845.1| unnamed protein product [Mus musculus]
          Length = 390

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 22  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 81

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 82  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 136 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 195

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 196 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 255

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 256 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 315

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 316 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 375

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 376 NTSIEEMPLNVADLI 390


>gi|302916935|ref|XP_003052278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733217|gb|EEU46565.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 545

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 181/424 (42%), Gaps = 27/424 (6%)

Query: 2   KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F   N+   + ++L        T +Q+  +   L+ +D +  ++TGSGKTVAF + + 
Sbjct: 114 TTFSALNVRPWLVQSLGNMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPIL 173

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                +       +A  A+ + PTRELA+Q+  + + + +   +   +  GG  +  +  
Sbjct: 174 QKWADDP------TAIFAVVLTPTRELALQIYEQFKAISSPQSLKAILITGGSDMRAQAI 227

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--------GFRDDIEF 171
           +L    H+V+ TPGRL DH+R  G +       V     +  D             D+E 
Sbjct: 228 ELGKRPHVVIATPGRLADHVRTSGEDTICGLRRVKYVVLDEADRLLNATGPGSMLPDVEQ 287

Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI-------DYRAV 224
            L   P          T +      A                   +         +   +
Sbjct: 288 CLSVLPPATERQTLLFTATITPEVRALKDMPIKPGKQPVFVCEVDTQTLAIPATLNQMYI 347

Query: 225 LVALSDRDNAIVNI--LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            V ++ +++ +        +  K  I+FC+  ++      +L     +V +L  +L Q++
Sbjct: 348 KVPVTHKEHYLHVFLLTEENVDKTIILFCNRTSTADYLHHLLRLLEHRVTSLHSKLPQRQ 407

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R + L   R   AR+ +ATDVAARG+D+P++ LVI+ +L  +P++ +HR GRT RAGRKG
Sbjct: 408 RIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKG 467

Query: 343 MSVFVIPQNMQRRAERLFREANVSVV--WEPAPSVEAIRERDAQRILQDPLFLDSIQGDE 400
            +V  I Q     A  + +     +    E   ++E    RD  +++ +      ++ +E
Sbjct: 468 EAVSFIGQRDVELALTIEKRVGREMESWEEEGVNLETRVVRDVLKVVSEKKREALLEVEE 527

Query: 401 KKMV 404
            + V
Sbjct: 528 NREV 531


>gi|31077172|sp|P29562|IF4A1_RABIT RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
          Length = 398

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 30  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 89

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 90  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 143

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 144 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 203

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 204 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 263

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 264 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 323

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 324 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 383

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 384 NTSIEEMPLNVADLI 398


>gi|312870458|ref|ZP_07730578.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
 gi|311094015|gb|EFQ52339.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
           PB013-T2-3]
          Length = 457

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/417 (25%), Positives = 188/417 (45%), Gaps = 12/417 (2%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F +  +   + +A++   +   T+VQE ++   L  K V+  + TGSGKT AF L L 
Sbjct: 4   KTFNDFKLKPYLVKAVTAINFHEPTAVQERVIPDILAGKSVVGQSATGSGKTHAFLLPLF 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVHR 116
           S +              A+   P+RELA Q+     +L     +   +     G    H+
Sbjct: 64  SRIDPA------VQEVQAVITTPSRELAYQIYNAAKQLNQFADQPLTIHNYVGGTDKQHQ 117

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +  +    +V+GTPGR+ D I+ + L++      V+DEAD  LD+GF + ++ I    
Sbjct: 118 IAQLERKQPQLVIGTPGRVLDLIKSQHLDVHTATMFVVDEADMTLDMGFLEQVDQIAGRF 177

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P+  +M++FSATI   +    K Y  + V   I +    + D++   +     DR+  I 
Sbjct: 178 PENLQMMVFSATIPEKLRPFLKKYMANPVIEEIPTATVINPDVENWLLSTKGHDRNQLIY 237

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+      T+ L+E   +V  + G L  + R   ++ +R+   +
Sbjct: 238 QLLTMGEPYLALVFANTKERAEELTRYLSEQGLKVALIHGGLEPRRRKRVMRQIRNLDYQ 297

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARGID+  + LVI+ +L ++ E  +HR GRTGR    G ++ +         
Sbjct: 298 YVVATDLAARGIDIDGVSLVINDDLPTDLEYFVHRVGRTGRNQMTGTAITLYEPAEDELI 357

Query: 357 ERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP 413
            +L  +  +  V +   +   +   D  R        + +    K  V     K  P
Sbjct: 358 AKLEDQ-GIKFVPKEVKNGRLVTTHDRNRRKMFRRRQEELDPSMKGYVKKAKRKVKP 413


>gi|297269347|ref|XP_002808135.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
           DDX6-like [Macaca mulatta]
          Length = 486

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 167/348 (47%), Gaps = 10/348 (2%)

Query: 28  EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87
           E  +   L  +D+L  A+ G+GK+ A+ + L   L  + D         A+ I PTRELA
Sbjct: 127 EESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI------QAMVIVPTRELA 180

Query: 88  VQVGR-ELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
           +QV +  ++      G  V    GG ++  +   L +  H+V+ TPGR+ D I+     +
Sbjct: 181 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKV 240

Query: 147 SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVR 206
            H++ +VLDEAD++L   F   +E I+ + PK R++L++SAT   ++     ++ +    
Sbjct: 241 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYE 300

Query: 207 VNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAE 266
           +N+  E             V    + + +  +        +I+FC++   V    K +++
Sbjct: 301 INLMEELTLKGV-TQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ 359

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
             +    +  ++ Q+ R+      R+G  R  + TD+  RGID+  + +VI+ +     E
Sbjct: 360 LGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAE 419

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
             LHR GR+GR G  G+++ +I  + +   + +  +    +  +P PS
Sbjct: 420 TYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEI--KPIPS 465


>gi|258543003|ref|YP_003188436.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634081|dbj|BAI00057.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637141|dbj|BAI03110.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640193|dbj|BAI06155.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643250|dbj|BAI09205.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646305|dbj|BAI12253.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649358|dbj|BAI15299.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652344|dbj|BAI18278.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655402|dbj|BAI21329.1| DNA/RNA helicase [Acetobacter pasteurianus IFO 3283-12]
          Length = 400

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 103/395 (26%), Positives = 174/395 (44%), Gaps = 21/395 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +     + G    T VQ+A +   L  +DVLV A TG+GKT A+ L L+  LL   
Sbjct: 10  LDPALCAYAQQAGMAAPTPVQQAAIPAILDGRDVLVRAPTGTGKTAAYALPLSQKLLKSR 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWL----YAKTGVVVAVCIGGVSVHRERRDLQ 122
                      L + PTREL +QV +                    +             
Sbjct: 70  KPR------FVLVLVPTRELVLQVEKVFRTCLGESKKGQKQTPVTLVPLFGGSDRAEQEH 123

Query: 123 NGAH-----IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             A      I++ TPGRL D +  +  ++S    +VLDE D +    F++D E +L   P
Sbjct: 124 FLAQATGRRILIATPGRLLDFVSNRICDLSECGYLVLDEGDRLFSPEFQEDTETLLSYLP 183

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
             R+ L+ SAT   ++ +   N     V ++I    ++   I   A+ +  + +   I  
Sbjct: 184 SMRQTLVLSATQPESLKSTLLNLLHKPVEISIEQAPQKRGPIRQAALFLDPTQKPGFIKE 243

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                    +IVF  T+A   +   +L +       L G+++Q +R++ +     GR  +
Sbjct: 244 FFSRAPKMRSIVFVRTKAEADQLAALLKKARLAAAPLHGDIAQDKRTSTVASFESGRLFI 303

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+P ++ VI+ ++   PE  LHR GRTGR G KG ++ +   + ++   
Sbjct: 304 LVATDVAARGLDVPSVKQVINYDVPDQPETYLHRIGRTGRGGEKGSALTLCTMDDRQSLR 363

Query: 358 RLFREANVSV------VWEPAPSVEAIRERDAQRI 386
           ++   A+V +         PAPS      R ++ +
Sbjct: 364 QIEVGAHVKLRIISAEQALPAPSQPQTASRRSKSV 398


>gi|256070762|ref|XP_002571711.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238656858|emb|CAZ27941.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 453

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 118/447 (26%), Positives = 199/447 (44%), Gaps = 56/447 (12%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +     I E L ++G    T VQE  +   L   DV+  A+TGSGKT AF + +  
Sbjct: 2   TFEELGVCPEIVELLRDKGINKPTEVQEGCIPVILEGNDVVACAKTGSGKTAAFLIPILQ 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRE---LEWLYAKTGVVVAVCIGGVSVHRE 117
           +L+ E           AL I PTRELA Q+G +   L  +  +    V V  GG S+  +
Sbjct: 62  SLMTE------LKPLYALIITPTRELAHQIGEQAAGLNLIQGEPLCNVLVITGGRSIVHQ 115

Query: 118 RRDLQNGAHIVVGTPGRLCDH------------IRGKGLNISHLKAVVLDEADEMLDLGF 165
             DL    HIVV TPGRL D                    +S  K VVLDEAD +L+  F
Sbjct: 116 SIDLARSPHIVVSTPGRLADLLRTQTAAQEADTENKPEWTLSRTKVVVLDEADRLLEDNF 175

Query: 166 RDDIEFILDSSPKKRRMLMFSATI---------------SPAITTLAKNYQKDAVRVNIA 210
            +D+  IL + PK+R+ L+FSAT                          +Q + +    +
Sbjct: 176 GEDLNTILKALPKRRQTLLFSATFSGAVKSSLEAAKSVAYAENRRPPILWQPECMTTCSS 235

Query: 211 SENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAE 266
           +       +    +L+    ++  +V+ +     +N     ++F +          ++  
Sbjct: 236 AGAVTVETLSQYYILMRPEHKEAFLVHTVDQFLTENPHSLIMIFTNKCKWCHLIGLMMTS 295

Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
              +   L   ++Q+ R ++L + R  + RV IATD+A+RG+D P +++VI+  +   P+
Sbjct: 296 LGIKTTLLHSSMTQKNRISSLTLFRSSQIRVLIATDLASRGLDFPTVDIVINHNVPIRPK 355

Query: 327 NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
           + +HR GRT RAG+ G+++ +      +R + +    N  +          + E+   +I
Sbjct: 356 DYVHRVGRTARAGKAGLALTLCDLFEVKRLKAIQTFINKELKTF------DVNEKKVAQI 409

Query: 387 LQDPLF--------LDSIQGDEKKMVD 405
           + +           LD I+ DEK+ ++
Sbjct: 410 IAEVSIARRDAERKLDEIRFDEKREIN 436


>gi|308810851|ref|XP_003082734.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
 gi|116061203|emb|CAL56591.1| putative ethylene-responsive RNA helicase (ISS) [Ostreococcus
           tauri]
          Length = 682

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 173/376 (46%), Gaps = 14/376 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           + P  + E L    +   ++ Q       L  +DV+  A+TGSGKT+A+ L     + A+
Sbjct: 66  SFPSYVTEDLLREKFEAPSAAQSLAWPSALSGRDVVAVAETGSGKTLAYVLPAIVHVNAQ 125

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQNG 124
               +P   P+AL +APTRELA Q+  E+    A + +  A   GG     + +      
Sbjct: 126 -PVLAPGEGPIALVLAPTRELACQIELEVAKYAASSQLKHACVYGGAPKGPQVKALKSGE 184

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
             I V TPGRL D +     N+     VVLDEAD MLD+GF   I  I+  +   R+ L+
Sbjct: 185 CEICVATPGRLIDFLERGVTNLRRTTFVVLDEADRMLDMGFEPQIRRIVSQTRPDRQTLL 244

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASE-------NRQHSDIDYRAVLVALSDRDNAIVN 237
           F+AT    +  +A+   ++       S        ++    I +          +  I  
Sbjct: 245 FTATWPVEVREIARTLVRNNPVEFRVSGAGDSLLASKNVEQIVHVMNGDEEDKYEKLIET 304

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + R    +  +VF  T+ASV   T+ L    +  + L G+  Q+ER   L   + G + +
Sbjct: 305 LEREMDGERLLVFVETKASVDALTRKLRVGGWPALGLHGDKEQKERDWVLSEFKSGSSPI 364

Query: 298 CIATDVAARGIDLPDLELVIHAELSS--NPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            IATDVA+RG+D+  ++LV++ +  +    E  +HR GRTGRAGR G SV        R 
Sbjct: 365 MIATDVASRGLDVEGVKLVVNYDFPNRGGVEEYVHRIGRTGRAGRLGKSVTFFTIRDGRH 424

Query: 356 AE---RLFREANVSVV 368
           A     + R +   V 
Sbjct: 425 ARGLVDVLRSSGQRVP 440


>gi|77736089|ref|NP_001029743.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
 gi|122140837|sp|Q3ZBV2|DD19A_BOVIN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box protein 19A
 gi|73587381|gb|AAI03094.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Bos taurus]
 gi|296478245|gb|DAA20360.1| ATP-dependent RNA helicase DDX19A [Bos taurus]
          Length = 478

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +            P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAE------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|320586265|gb|EFW98944.1| dead box ATP-dependent RNA helicase [Grosmannia clavigera kw1407]
          Length = 623

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 192/419 (45%), Gaps = 13/419 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +     + L++ G+  +T++Q   L P L  KDVL +A+TGSGKT+AF +     L    
Sbjct: 141 LSDRTKQGLADMGFETMTAIQRRALPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLF--A 198

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +F P +    + + PTRELA+Q+    + L A       + +GG +   E   L  G +
Sbjct: 199 LKFKPRNGVGVVVVTPTRELALQIWGVAQELMAHHTQTTGIVMGGANRRAEAEKLGRGVN 258

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           ++V TPGRL DH          HL+++++DEAD +L++GF D++  I+   PK+R+ ++F
Sbjct: 259 LLVATPGRLLDHLQNTPNFLYKHLRSLIIDEADRILEVGFEDELRQIIKILPKERQTMLF 318

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRD--NAIVNILR 240
           SAT +  I  LAK   +         E +Q S +D      V+    DR           
Sbjct: 319 SATQTQKIDDLAKVSLRANPLYLNVDEAQQFSTVDGLEQGYVVCGSQDRFLLLWSFLKRM 378

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
               K  + F S  +       +    L  V+ L G+  Q +R++      +    + + 
Sbjct: 379 AGKKKVIVFFSSCNSVKYHADLLRYIDLGGVLDLHGKQKQAKRTSTFFEFCNAEQGILLC 438

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRRAER 358
           TDVAARG+D+P ++ ++  +   +    +HR GRT R   GR G S+  +  +       
Sbjct: 439 TDVAARGLDIPAVDWIVQFDPPDDGRAYVHRVGRTARGTEGR-GKSLLFLLPSEVGFLAY 497

Query: 359 LFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
           L REA V VV    P+ +    +   +++L    +L     D  +      A H    +
Sbjct: 498 L-REARVPVVEYEFPTSKVRNVQAQLEKLLAQNYYLHQSAKDGFRAYLHAYASHSLRSV 555


>gi|300811569|ref|ZP_07092053.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497429|gb|EFK32467.1| putative DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 453

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 178/357 (49%), Gaps = 9/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  + 
Sbjct: 10  LRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAIDED- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQN 123
                A    A+  AP+RELA Q+ R    L   +G+ +A+     G     +  R  QN
Sbjct: 69  -----ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQN 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M 
Sbjct: 124 KPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMS 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI   +T   + Y      + I +       I    + +   DR   +  +L    
Sbjct: 184 AFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQ 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+
Sbjct: 244 PYLALVFANTKQMVDELADYLTKQGLKVAKIHGGITERERKRTLREVRAGQYQYVVASDL 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           AARGIDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++ +    R   L 
Sbjct: 304 AARGIDLPGVNLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGALE 360


>gi|291390465|ref|XP_002711762.1| PREDICTED: DDX19-like protein isoform 1 [Oryctolagus cuniculus]
          Length = 478

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RHPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
 gi|46576606|sp|Q8K4L0|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
           box protein 54
 gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
 gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
          Length = 874

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 100/381 (26%), Positives = 169/381 (44%), Gaps = 9/381 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L A  
Sbjct: 102 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 161 ---SAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  +++ +  +    +LV    +      +        
Sbjct: 278 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQ 337

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L Q  R   L      +    I TD+A
Sbjct: 338 DQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLA 397

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 398 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457

Query: 365 VSVVWE---PAPSVEAIRERD 382
            SV        PSV     RD
Sbjct: 458 RSVTLARPCEEPSVADAVGRD 478


>gi|4503529|ref|NP_001407.1| eukaryotic initiation factor 4A-I isoform 1 [Homo sapiens]
 gi|21450625|ref|NP_659207.1| eukaryotic initiation factor 4A-I isoform 1 [Mus musculus]
 gi|40786436|ref|NP_955404.1| eukaryotic initiation factor 4A-I [Rattus norvegicus]
 gi|77735407|ref|NP_001029400.1| eukaryotic initiation factor 4A-I [Bos taurus]
 gi|154147660|ref|NP_001093666.1| eukaryotic initiation factor 4A-I [Sus scrofa]
 gi|326807000|ref|NP_001192066.1| eukaryotic initiation factor 4A-I [Callithrix jacchus]
 gi|149724255|ref|XP_001504824.1| PREDICTED: eukaryotic translation initiation factor 4A, isoform 1
           [Equus caballus]
 gi|291405131|ref|XP_002718844.1| PREDICTED: eukaryotic translation initiation factor 4A-like
           [Oryctolagus cuniculus]
 gi|301778191|ref|XP_002924476.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Ailuropoda
           melanoleuca]
 gi|46397463|sp|P60842|IF4A1_HUMAN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|46397464|sp|P60843|IF4A1_MOUSE RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|109892471|sp|Q3SZ54|IF4A1_BOVIN RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|219403|dbj|BAA02897.1| eukaryotic initiation factor 4AI [Homo sapiens]
 gi|2943740|dbj|BAA25075.1| eIF4A [Mus musculus]
 gi|16307020|gb|AAH09585.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|26346290|dbj|BAC36796.1| unnamed protein product [Mus musculus]
 gi|29612606|gb|AAH49915.1| Eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|39793992|gb|AAH63812.1| Eukaryotic translation initiation factor 4A1 [Rattus norvegicus]
 gi|49522221|gb|AAH73752.1| Eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696622|gb|AAV38683.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|54696624|gb|AAV38684.1| eukaryotic translation initiation factor 4A, isoform 1 [Homo
           sapiens]
 gi|58864806|emb|CAI51943.1| eukaryotic translation initiation factor 4A1 [Mus musculus]
 gi|61357581|gb|AAX41409.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|61357587|gb|AAX41410.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
 gi|74138684|dbj|BAE27158.1| unnamed protein product [Mus musculus]
 gi|74138757|dbj|BAE27191.1| unnamed protein product [Mus musculus]
 gi|74139346|dbj|BAE40818.1| unnamed protein product [Mus musculus]
 gi|74139356|dbj|BAE40821.1| unnamed protein product [Mus musculus]
 gi|74139407|dbj|BAE40845.1| unnamed protein product [Mus musculus]
 gi|74141945|dbj|BAE41037.1| unnamed protein product [Mus musculus]
 gi|74151432|dbj|BAE38831.1| unnamed protein product [Mus musculus]
 gi|74151508|dbj|BAE38862.1| unnamed protein product [Mus musculus]
 gi|74177669|dbj|BAE38935.1| unnamed protein product [Mus musculus]
 gi|74185163|dbj|BAE39182.1| unnamed protein product [Mus musculus]
 gi|74188940|dbj|BAE39241.1| unnamed protein product [Mus musculus]
 gi|74189138|dbj|BAE39326.1| unnamed protein product [Mus musculus]
 gi|74189153|dbj|BAE39332.1| unnamed protein product [Mus musculus]
 gi|74193609|dbj|BAE22765.1| unnamed protein product [Mus musculus]
 gi|74198159|dbj|BAE35256.1| unnamed protein product [Mus musculus]
 gi|74201277|dbj|BAE26099.1| unnamed protein product [Mus musculus]
 gi|74204464|dbj|BAE39979.1| unnamed protein product [Mus musculus]
 gi|74208421|dbj|BAE26397.1| unnamed protein product [Mus musculus]
 gi|74211475|dbj|BAE26477.1| unnamed protein product [Mus musculus]
 gi|74220076|dbj|BAE40614.1| unnamed protein product [Mus musculus]
 gi|74220399|dbj|BAE31424.1| unnamed protein product [Mus musculus]
 gi|74268155|gb|AAI03131.1| Eukaryotic translation initiation factor 4A, isoform 1 [Bos taurus]
 gi|85792232|gb|ABC84193.1| eukaryotic translation initiation factor 4A isoform 1 [Sus scrofa]
 gi|90076216|dbj|BAE87788.1| unnamed protein product [Macaca fascicularis]
 gi|119610573|gb|EAW90167.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|119610574|gb|EAW90168.1| eukaryotic translation initiation factor 4A, isoform 1, isoform
           CRA_b [Homo sapiens]
 gi|123992423|gb|ABM83970.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|123999458|gb|ABM87287.1| eukaryotic translation initiation factor 4A, isoform 1 [synthetic
           construct]
 gi|149053069|gb|EDM04886.1| eukaryotic translation initiation factor 4A1, isoform CRA_c [Rattus
           norvegicus]
 gi|168279007|dbj|BAG11383.1| eukaryotic initiation factor 4A-I [synthetic construct]
 gi|189069177|dbj|BAG35515.1| unnamed protein product [Homo sapiens]
 gi|296476703|gb|DAA18818.1| eukaryotic translation initiation factor 4A isoform 1 [Bos taurus]
 gi|227238|prf||1617105B initiation factor 4AI
          Length = 406

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|159113843|ref|XP_001707147.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
 gi|157435250|gb|EDO79473.1| ATP-dependent RNA helicase HAS1, putative [Giardia lamblia ATCC
           50803]
          Length = 547

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 187/417 (44%), Gaps = 14/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA+   G+ N+T +QEA +   L  +++   A TGSGK++AF L     +   
Sbjct: 35  SLSPFLLEAVDAMGHKNMTRIQEASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDLIHKA 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +    +  + L   PTRELA+Q+      L + T + V + IGG S  +E   L  GA
Sbjct: 95  NMKLHHGTGVIVL--TPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCKGA 152

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PK 178
            +V+ TPGRLCDH+          L  ++LDEAD +L+ GF+ ++E IL           
Sbjct: 153 SVVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLRQV 212

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                  S                  +  ++ S     +  +   ++     R   +   
Sbjct: 213 CFFSATMSDKCLEVPHMEVDKETLIRINTDVKSSAATRAHFEQGYIICPPEQRFLLLYTF 272

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKV-LAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           ++    K  IVF S+R SV  + +      +  ++ L G + Q++R        + ++ V
Sbjct: 273 MKRRSDKKIIVFLSSRDSVEFYYEFLRFIGMASILMLDGGMKQKQRMETYNKFCNAQSGV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA--GRKGMSVFVIPQNMQRR 355
            +AT+VAARG+DLP ++ VI  +   + E+ +HR+GR  R   G+KG+ +  +  +  + 
Sbjct: 333 LLATNVAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTGKKGVGLLFLMSHETKF 392

Query: 356 AERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                +  NVS+     P+ + I  + + + ++    +L     +  +      A H
Sbjct: 393 I-SFLKAHNVSLFEFEFPADKIINVQAEMENLIATIYYLRRKAQNAYRSFISAYASH 448


>gi|311257030|ref|XP_003126917.1| PREDICTED: ATP-dependent RNA helicase DDX19A-like isoform 1 [Sus
           scrofa]
          Length = 478

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +            P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAE------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 684

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 107/361 (29%), Positives = 177/361 (49%), Gaps = 9/361 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY   T +Q   +   LR  D++  A+TGSGKT A+ + + + L   +          
Sbjct: 30  KKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINRLETHSTE-----GVR 84

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +L I PTRELA+Q  +    L   T +  ++ IGG  +  +  +L +G  I+V TPGRL 
Sbjct: 85  SLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGPDIIVATPGRLT 144

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             + G  ++++ ++ V  DEAD M + GF + +  I+   P  R++L+FSAT+   +   
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAEF 204

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVFCSTR 254
            KN  K    + + +E R   D+D     V   +++  ++ +L          +VFC+TR
Sbjct: 205 LKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKEGHLLYLLLDLIGDKEQTVVFCATR 264

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    +VL     +   + G+  QQER   L+  R     V + TDVAARG+D+P+L+
Sbjct: 265 HEVEYLNEVLKIFDIKTSMMFGKADQQEREINLKKFRKQETHVLLVTDVAARGVDIPELD 324

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSVVWEPA 372
            VI+ +  + P+  +HR GR  RAGR G     +  +       L  F   N  + +   
Sbjct: 325 NVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYLMDLQVFALENKEIEFGVI 384

Query: 373 P 373
           P
Sbjct: 385 P 385


>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
 gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
           50983]
          Length = 720

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 209/485 (43%), Gaps = 29/485 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + + +   L+  G+   T VQ  ++   LR +D+L  A+TGSGKT  F L +   L   +
Sbjct: 140 LSRPVLRGLNALGFAEPTPVQRDVIPVALRSQDILAMAETGSGKTGGFLLPIVERLCQAS 199

Query: 67  DRFSPASAP------------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              S    P             AL + PTRELAVQ  + L        +   + +GG   
Sbjct: 200 HVRSRRKDPHTGRITGGRAATKALVLLPTRELAVQCYKMLRDFTKFAPLTSCLVVGGFDA 259

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFI 172
            ++  +++    +V+ TPGR+ D +     +++   + VVLDE D +L++    + +  I
Sbjct: 260 QKQASEMRAQPDVVLATPGRVLDLLLNSPNIHLEMCEIVVLDECDRLLEMGFRDECLTII 319

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDR 231
                + R+ +MFSAT++  +  LAK      V +     NR    +      + +   R
Sbjct: 320 QKHCNRSRQTMMFSATMNQEVLKLAKVVLSKPVTIETTKANRVSPTLTQEFIRVTSEQQR 379

Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMM 290
           +  ++     H  K  ++FC+ + +  R   +L        A   G LSQQ+R  AL   
Sbjct: 380 EATLLAACTKHFTKRCLIFCAQKKTAHRMAVLLGLVGKVKFAELHGNLSQQQRVKALADF 439

Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
             G+A   I TD+AARG+DLP +E VI+ EL  +    +HR GRT RAG  G SV +   
Sbjct: 440 ESGKATHLICTDLAARGLDLPHVETVINFELPPDVTKYVHRVGRTARAGASGTSVTMYTP 499

Query: 351 NMQRRAERLFREANVSVVWEPA--PSVEAIRERDAQ---------RILQDPLFLDSIQGD 399
              ++ + + ++    V  + +  P+   + ER            +I +    +  I  +
Sbjct: 500 GEYKQVKHIAKKCTADVKRKKSSDPNQPKVLERTVDSEDVKDMAVKITESEDKVKQIMQE 559

Query: 400 EKKMVDVLLAKHDPEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGS 459
           E    ++ LA    +K+    ++ HR  +        +   +G +     S+  K     
Sbjct: 560 ESVERELRLADVMAKKV--DNMKTHRKEIDRRPRQQWIRKGAGAEAIDSASKVPKTRSEK 617

Query: 460 RDNFK 464
           R   K
Sbjct: 618 RAARK 622


>gi|156844185|ref|XP_001645156.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|160380632|sp|A7TK63|DBP8_VANPO RecName: Full=ATP-dependent RNA helicase DBP8
 gi|156115814|gb|EDO17298.1| hypothetical protein Kpol_1062p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 431

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 193/438 (44%), Gaps = 24/438 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M+ F+++   + + E+L+     + T++Q+  +   L+ +D +  A+TGSGKT+AF   +
Sbjct: 1   MQDFKSLGLSRWLVESLNAMRITHPTAIQKHCIPEILKGRDCIGGAKTGSGKTIAFAGPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            S    +       S    + + PTRELA+Q+  +   L +   + V + +GG S+ ++ 
Sbjct: 61  LSQWSDDP------SGMFGVVLTPTRELAIQIAEQFTALGSSMNIRVCLVVGGESIVKQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNIS----HLKAVVLDEADEMLDLGFRDDIEFILD 174
            +LQ   H ++ TPGRL  HI   G  +      +K +VLDEAD +L   F  D+   + 
Sbjct: 115 LELQKKPHFIIATPGRLAHHILSSGEEVVGGLSRVKYLVLDEADLILTQTFAADLSTCIA 174

Query: 175 SSPKKRRML----------MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
             P K++               A  +              V             ++Y  V
Sbjct: 175 KLPPKQKRQTLLFTATITDQVRALQNAPAQDSKPPLFAYEVENVDNVAVPSTLKLEYLLV 234

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              + +     +     +   + IVF +   +     + L     +V +L  ++ Q ER 
Sbjct: 235 PEHVKEAYLYQLLTCEDYKDSSVIVFVNRTTAAEVLRRTLRSLEVRVASLHSQMPQSERI 294

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           N+LQ  R   ARV IATDVAARG+D+P +ELVI+ ++  +P+  +HRSGRT RAGR G +
Sbjct: 295 NSLQRFRANAARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDA 354

Query: 345 VFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           +  +      R E +    N  +         A+  +   ++ +     +S+   EK   
Sbjct: 355 ISFVTPRDVSRIEAIEERINKKMDECKKVHDTAVIRKALTKVTK--AKRESLMDMEKANF 412

Query: 405 DVLLAKHDPEKIAAGFLR 422
                    + +A   LR
Sbjct: 413 GEKRKTQKKKNLAEKSLR 430


>gi|54038020|gb|AAH84268.1| LOC495097 protein [Xenopus laevis]
          Length = 717

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 102/396 (25%), Positives = 179/396 (45%), Gaps = 14/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q  ++   L  KDV+  A+TGSGKT  F + +   L A  
Sbjct: 82  LSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAH- 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +    L ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 141 ---SAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 197

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ L+FS
Sbjct: 198 IIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFS 257

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  + +    +      V + D+   +++         
Sbjct: 258 ATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQ 317

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       ++L         +   L Q  R   L +   G+ R  + TDVA
Sbjct: 318 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVTDVA 377

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359
           ARGID+P L+ VI+       +  LHR GR  RAGR G +   I  +       L     
Sbjct: 378 ARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHLFLG 437

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
              + AN   +   A + + +  R  Q ++ D   L
Sbjct: 438 RPLKLANAQNIETEADT-DGVLGRVPQSLIDDEDAL 472


>gi|147898895|ref|NP_001088266.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus laevis]
 gi|83318280|gb|AAI08845.1| LOC495097 protein [Xenopus laevis]
          Length = 846

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 102/396 (25%), Positives = 179/396 (45%), Gaps = 14/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q  ++   L  KDV+  A+TGSGKT  F + +   L A  
Sbjct: 82  LSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAH- 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +    L ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 141 ---SAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 197

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ L+FS
Sbjct: 198 IIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFS 257

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  + +    +      V + D+   +++         
Sbjct: 258 ATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQ 317

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       ++L         +   L Q  R   L +   G+ R  + TDVA
Sbjct: 318 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVTDVA 377

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359
           ARGID+P L+ VI+       +  LHR GR  RAGR G +   I  +       L     
Sbjct: 378 ARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHLFLG 437

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
              + AN   +   A + + +  R  Q ++ D   L
Sbjct: 438 RPLKLANAQNIETEADT-DGVLGRVPQSLIDDEDAL 472


>gi|62740160|gb|AAH94142.1| LOC495097 protein [Xenopus laevis]
          Length = 693

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 102/396 (25%), Positives = 179/396 (45%), Gaps = 14/396 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q  ++   L  KDV+  A+TGSGKT  F + +   L A  
Sbjct: 82  LSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAH- 140

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +    L ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 141 ---SAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 197

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ L+FS
Sbjct: 198 IIIATPGRLMHVAIEMNLKLRSVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFS 257

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  + +    +      V + D+   +++         
Sbjct: 258 ATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQ 317

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  ++F +T+       ++L         +   L Q  R   L +   G+ R  + TDVA
Sbjct: 318 EQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLFLHGKVRALLVTDVA 377

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----- 359
           ARGID+P L+ VI+       +  LHR GR  RAGR G +   I  +       L     
Sbjct: 378 ARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAPDEIPYVYDLHLFLG 437

Query: 360 --FREANVSVVWEPAPSVEAIRERDAQRILQDPLFL 393
              + AN   +   A + + +  R  Q ++ D   L
Sbjct: 438 RPLKLANAQNIETEADT-DGVLGRVPQSLIDDEDAL 472


>gi|82539303|ref|XP_724049.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23478563|gb|EAA15614.1| Unknown protein [Plasmodium yoelii yoelii]
          Length = 635

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 118/427 (27%), Positives = 192/427 (44%), Gaps = 33/427 (7%)

Query: 2   KIFENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++F +IPQ+   I E L  +G   +T +Q     P     D++  ++TGSGKT+AF L L
Sbjct: 107 ELFSSIPQINQKIVEFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTIAFALPL 166

Query: 59  ASTLLAENDRFSPASA-------------------------PLALAIAPTRELAVQVGRE 93
              L    +                                P  L + PTREL+ QV   
Sbjct: 167 VEKLYKNIESQKKIIKNKSNEINSIQHLSEEGNKNDNMDKDPYILVLEPTRELSKQVETT 226

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            + +       +    GG S   +   L+ G  I+ GTPGR+ DHI  K L++ ++K VV
Sbjct: 227 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVV 286

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRML--MFSATISPAITTLAKNYQKDAVRVNIAS 211
           LDEADEML+LGF  DIE IL     K   +    + T S      +K  +       I +
Sbjct: 287 LDEADEMLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINT 346

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHL 268
            N+    I + A+      ++ A++              I+F  T+          + + 
Sbjct: 347 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILASEGSFNY 406

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
                L G ++Q  R + +Q  R+G  +V IATD+AARG+D+ +++L+I     + P   
Sbjct: 407 LNFSVLHGNIAQSTREHTMQRFRNGMFQVLIATDIAARGLDISNVDLIIQCYPPTYPAIY 466

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
           +HRSGRTGRA +KG+S+ +     +    ++ +   +  + E  PS E +    ++ IL+
Sbjct: 467 IHRSGRTGRANKKGISIVLFSNEDKNDVIKIEKNCGIKFLTESLPSNEQVFHSVSKIILK 526

Query: 389 DPLFLDS 395
               ++S
Sbjct: 527 KIENVNS 533


>gi|170099249|ref|XP_001880843.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644368|gb|EDR08618.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 461

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 100/406 (24%), Positives = 186/406 (45%), Gaps = 30/406 (7%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLA 57
           K FE +     + + + + G+   + +QE  L   L     +++  +Q+G+GKT AF L 
Sbjct: 64  KTFEELGLQADLLKGIYDMGFSKPSKIQERALPLLLSNPPTNMIGQSQSGTGKTAAFVLT 123

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + S +    ++      P AL +AP+RELA Q+   +  +   T          +  +  
Sbjct: 124 MLSRVDFSLNK------PQALCLAPSRELARQIMSVVVAMGKFTN---VQTEYAIKDNLP 174

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           R      A I+VGTPG + D +R K ++++H+K  VLDEAD MLD     D    + +  
Sbjct: 175 RNATNVTAQIIVGTPGTMTDLMRRKVIDVTHIKVFVLDEADNMLDQDGLGDQTLRVKNLL 234

Query: 178 KKRRMLM---FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV-LVALSDRDN 233
            +   +    FSAT    + + A N+  +A ++ +  E      I    +       + +
Sbjct: 235 PRGSPVQIILFSATFPDHVRSFAANFAPNANKIELQKEELSVEGIRQFYMDCRNEEHKYD 294

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
            +V++        +I+FC  R +  R ++ +     +V +L G     ER   +   R+G
Sbjct: 295 ILVSLYSLLTIGQSIIFCQHRHTADRISQRMTAEGHKVASLHGAKDAAERDAIIDHFREG 354

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELS------------SNPENLLHRSGRTGRAGRK 341
           R +V I T+V ARGID+  + +V++ +L              + E  +HR GRTGR GRK
Sbjct: 355 RDKVLITTNVIARGIDILQVNMVVNYDLPLMNEREKGGDGIPDIETYIHRIGRTGRFGRK 414

Query: 342 GMSVFVI-PQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRI 386
           G+S+  +  +    + E++ +     ++      ++ + E+  + +
Sbjct: 415 GISINFVHDKKTWLQMEQIEKALGRKIIRIETNDLDEMEEKMKKAL 460


>gi|556308|gb|AAA50407.1| protein synthesis initiation factor 4A [Mus musculus]
          Length = 406

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|238881797|gb|EEQ45435.1| ATP-dependent RNA helicase SUB2 [Candida albicans WO-1]
          Length = 433

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 179/377 (47%), Gaps = 13/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   DVL  A++G GKT  F L+    L    
Sbjct: 56  LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQ 122
              S       L I  TRELA Q+  E          V      G +  +      ++  
Sbjct: 116 GEIS------TLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKD 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +  K + ++++K+ V+DE D++L+ +  R D++ I  ++P +++
Sbjct: 170 TCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +       +  +     +++  + ++L 
Sbjct: 230 VMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L    F  +A+   L Q+ER    +  ++   R+C++
Sbjct: 290 SLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICVS 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDV  RGID+  + L I+ +L +  +  LHR GR GR G KG++V  +  +  +   E++
Sbjct: 350 TDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFVSSKEDEEVLEKI 409

Query: 360 FREANVSVVWEPAPSVE 376
               +V +   P   V+
Sbjct: 410 QSRFDVKITEFPEEGVD 426


>gi|241953960|ref|XP_002419701.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
 gi|223643042|emb|CAX41916.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
          Length = 433

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 179/377 (47%), Gaps = 13/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   DVL  A++G GKT  F L+    L    
Sbjct: 56  LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQ 122
              S       L I  TRELA Q+  E          V      G +  +      ++  
Sbjct: 116 GEIS------TLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYGGTPIKRDIEKLKNKD 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +  K + ++++K+ V+DE D++L+ +  R D++ I  ++P +++
Sbjct: 170 TCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +       +  +     +++  + ++L 
Sbjct: 230 VMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L    F  +A+   L Q+ER    +  ++   R+C++
Sbjct: 290 SLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICVS 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDV  RGID+  + L I+ +L +  +  LHR GR GR G KG++V  +  +  +   E++
Sbjct: 350 TDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFVSSKEDEEVLEKI 409

Query: 360 FREANVSVVWEPAPSVE 376
               +V +   P   V+
Sbjct: 410 QSRFDVKITEFPEEGVD 426


>gi|19115173|ref|NP_594261.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe 972h-]
 gi|59800426|sp|O13792|SUB2_SCHPO RecName: Full=ATP-dependent RNA helicase uap56
 gi|2408027|emb|CAB16225.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe]
          Length = 434

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 179/372 (48%), Gaps = 13/372 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F L+    +   +
Sbjct: 58  LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVD 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L +  TRELA Q+  E          V                  +D  
Sbjct: 118 GEVS------VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKS 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +R K L ++ +K  VLDE D++L+ +  R DI+ +  ++P +++
Sbjct: 172 KSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +     +    V +    ++  I ++L 
Sbjct: 232 VMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLD 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  ++F  + +  +   ++L E  F  + + G L Q+ER    +  +D   R+C+A
Sbjct: 292 SLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVA 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV-IPQNMQRRAERL 359
           TDV  RGID+  + +VI+ ++  +P++ LHR GR GR G KG+++     +   +  +++
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKI 411

Query: 360 FREANVSVVWEP 371
                V++   P
Sbjct: 412 QERFEVNITELP 423


>gi|320527333|ref|ZP_08028518.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
 gi|320132357|gb|EFW24902.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
          Length = 455

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 117/470 (24%), Positives = 200/470 (42%), Gaps = 31/470 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           MK FE  N+       + +  +   T +QE ++   LR KDV+  + TGSGKT A+ + +
Sbjct: 1   MKKFEDFNLKDTTMAFIEKNHFKQPTPIQEQVIPSALRGKDVIGLSSTGSGKTHAYLIPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG--GVSVHR 116
              +    D          +  APTRELA Q+    + +      +              
Sbjct: 61  MEKVDPNKDEA------QVIITAPTRELATQIYEMAKVMTEVIPELRVRLYVGGRERSKD 114

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGL-NISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             +  ++  HIVVGTPGR+ D     G   I     +V+DEAD  L+ GF D+I+     
Sbjct: 115 VEQLEKSQPHIVVGTPGRIKDLFLNGGALRIDKASMLVVDEADMTLEYGFLDEIDAFAGR 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                +ML FSAT+   +      Y    +   I  + R + DI +  V          I
Sbjct: 175 LGDHLQMLAFSATMPDQLKPFINKYMHHPITYQIGEKVRFNPDIKHVLVPCYHHSYAETI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           ++IL        ++F +TR   S   + L ++   V  + G+L+ ++R  A++ + +   
Sbjct: 235 LSILPGFQPYVCLIFANTRQEASVIAEELRKNKVSVSEIHGDLTSRKRKQAMKSISNAEH 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATD+AARGID+ ++  +I      + E  +HR+GRTGRAG KG    +  ++  + 
Sbjct: 295 TYVVATDLAARGIDIGEVTHIISCGFPEDLEYYIHRAGRTGRAGSKGTCYALYQESDDQA 354

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD---EKKMVDVLLAKHD 412
              L +              + +R R +   +  P     ++ D   EKK+  ++  K+ 
Sbjct: 355 IRSLQKRGI---------KFDHVRHRTSGWQILHPYGQRRLKTDDELEKKIAMIMTKKNT 405

Query: 413 ------PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVG 456
                  +K AA   R+HR      E I        +  +++ +R  + G
Sbjct: 406 KVKPGYKKKRAAAIDRVHRQKKR--EMIRSKIREEKKAMYKERARKDREG 453


>gi|319791034|ref|YP_004152674.1| dead/deah box helicase domain protein [Variovorax paradoxus EPS]
 gi|315593497|gb|ADU34563.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
          Length = 421

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 126/372 (33%), Positives = 200/372 (53%), Gaps = 4/372 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A +E G+   T++Q A + P L+ +DV  SAQTGSGKT AF L L   L AE 
Sbjct: 8   LAPALVQAAAESGFAAPTAIQAAAIPPILQGRDVRGSAQTGSGKTAAFSLPLLQRLAAEP 67

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNG 124
            +        AL + PTRELA QVG  +  L         +A+  GGVS++ +   L+ G
Sbjct: 68  AQSPRR--VRALVLVPTRELAAQVGETMRSLAQHLPERLKIAIAFGGVSINPQMMSLRGG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IVV TPGRL D +    L +  +  +VLDEAD + DLGF +++  IL   P +R+ L+
Sbjct: 126 ADIVVATPGRLLDLVEHNALKLGAVSMLVLDEADRLFDLGFAEELGRILALLPAQRQNLL 185

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
           FSAT  PAI +LA    +D   +++  E     +I  R + V  + R   + ++L+ +  
Sbjct: 186 FSATFPPAIQSLADGMLRDPAVIDMQGEPGTEPNIVQRVIEVDANRRTQLLRHLLKENEW 245

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
           +  +VF +T+ S     + L ++    V   G+++Q  R+  L   ++ R  V IATD+A
Sbjct: 246 ERVLVFVATQHSAQIVAEKLYKNGVYAVPFHGDIAQGTRTGILAQFKESRWDVVIATDLA 305

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L +VI+ +L  +P + +HR GRTGRAG  G+++  +  + +     + +   
Sbjct: 306 ARGIDIAQLPVVINYDLPRSPTDYIHRIGRTGRAGESGLAISFVSASTEAHFRLIEKRQG 365

Query: 365 VSVVWEPAPSVE 376
           + +  E     E
Sbjct: 366 LLLPRERIEGFE 377


>gi|290890826|ref|ZP_06553893.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
 gi|290479598|gb|EFD88255.1| hypothetical protein AWRIB429_1283 [Oenococcus oeni AWRIB429]
          Length = 454

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 179/386 (46%), Gaps = 16/386 (4%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I +A+    +   T VQ+ I+ P +  +DV+  +QTGSGKT AF L + + L   
Sbjct: 9   NLKTEIVKAIDGISFNKPTKVQKRIIPPIIAGRDVVGQSQTGSGKTHAFLLPIFNGLDPS 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG---------VVVAVCIGGVSVHR 116
            +         A+  +P+RELA Q+ +                    +     G     +
Sbjct: 69  LEE------TQAVITSPSRELAEQLYQAFRDFQKSLAAIDENFADLRIADYIGGTDRNKQ 122

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            R+  +    I +GTPGRL D +    L ++  +  V+DEAD  LD+GF +D++ I  + 
Sbjct: 123 IRQLERKQPQIAIGTPGRLKDFLSKNFLLVNQNRFFVVDEADMALDMGFLEDVDTIASAM 182

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           P   +ML+FSATI   +T   K Y K+ +   I         ID   +     D++  I 
Sbjct: 183 PDNLQMLVFSATIPDKLTPFLKRYMKNPLIEEIPVSTVVADTIDNYLLATKSKDKNEVIF 242

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           ++L    +   +VF +T+  V      L     +   + G +  +ER   ++ ++    +
Sbjct: 243 DLLTRKESYLTLVFANTKERVHELAHFLDSQGLKAAEVHGGIEPRERRRTMKRIKKQEFQ 302

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +ATD+AARG+D+  +  VI+ ++ ++ E  +HR GRTGR G  G ++ +   + + + 
Sbjct: 303 YVVATDLAARGLDIQGVSEVINDDIPTDLEFFIHRVGRTGRNGLPGTAITLYGPDEEDKV 362

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   ++   +     + I  +D
Sbjct: 363 EELEK-LGINFQAKQLKDHQLIDVKD 387


>gi|158259929|dbj|BAF82142.1| unnamed protein product [Homo sapiens]
          Length = 406

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 188/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +R  I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRALITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|157864458|ref|XP_001680939.1| ATP-dependent DEAD/H RNA helicase [Leishmania major strain
           Friedlin]
          Length = 502

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 117/338 (34%), Positives = 178/338 (52%), Gaps = 6/338 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F ++  P  I +A  + G+   T +Q       L  +D++  A+TGSGKT+AF +  
Sbjct: 144 MLEFSDLVAPDAIHQAFMDAGFQKPTPIQSVSWPVLLNSRDIVGVAKTGSGKTMAFMIPA 203

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH-RE 117
           A  ++A+     P   P+AL +APTRELAVQ+  E      +   ++  C+ G +    +
Sbjct: 204 ALHIMAQPP-LQPGDGPIALVLAPTRELAVQIETETRKALTRVPSIMTTCVYGGTPKGPQ 262

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R L+ G H+ + TPGRL D +     N+  +  + LDEAD MLD+GF D I  I     
Sbjct: 263 QRALRAGVHVCIATPGRLIDLLETNCTNLLRVTYLTLDEADRMLDMGFEDQIRKICSQIR 322

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALSDRDNAIV 236
             R+ LMFSAT    I  LA ++QKD VRV+I SE    ++D+     +V    ++  + 
Sbjct: 323 TDRQTLMFSATWPREIRNLAASFQKDFVRVHIGSEELVANADVHQHVFVVEGYHKEEKME 382

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV-ALSGELSQQERSNALQMMRDGRA 295
            ILR  G +  +VF  T+ S       L   L Q V A+ G+  Q  R   L   R    
Sbjct: 383 EILRQVGPQRVLVFVKTKKSCDILQDRLGRALRQTVLAIHGDKLQSSRDYVLDRFRKDER 442

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
            + +ATDVAARG+D+ DL++V++ ++  N E+ +HR G
Sbjct: 443 AILVATDVAARGLDIKDLDVVVNYDMPLNIEDYVHRIG 480


>gi|164659598|ref|XP_001730923.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
 gi|159104821|gb|EDP43709.1| hypothetical protein MGL_1922 [Malassezia globosa CBS 7966]
          Length = 552

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 125/399 (31%), Positives = 188/399 (47%), Gaps = 29/399 (7%)

Query: 1   MKIFENIPQVIGEALSER----GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  F+ +   I   L ER    G+   T +Q       L+ +D++  A+TGSGKT+AFG+
Sbjct: 117 MLSFDELNGKINPKLKERLDMEGFSKPTLIQSCCWPVLLQGRDMVGVAETGSGKTLAFGI 176

Query: 57  ALASTLLAENDRFSPASAP----------LALAIAPTRELAVQVGRELEWLYAKTGVVVA 106
                ++ +    S +S              L IAPTRELA+Q    L  +    G  V 
Sbjct: 177 PALQYVMEQWPPSSTSSIKKSKSNNKNKIHVLVIAPTRELAIQTRDNLARVAEPLGYGVF 236

Query: 107 VCIGGVSVHRERRD---LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL 163
              GGVS   + R+        HI+VGTPGR+ D  R + L++ H+  + LDEAD MLD 
Sbjct: 237 CLYGGVSKGEQIRELASYALPVHIIVGTPGRVLDLAREESLDLGHVSYLTLDEADRMLDK 296

Query: 164 GFRDDIEFILDSSPKK---RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
           GF  DI  I+  +      RR  MFSAT  PA+  LA  + +  VRV + S+    +   
Sbjct: 297 GFEPDIRAIIGMTKTNEDGRRTNMFSATWPPAVRGLADTFMRVPVRVTVGSDVLSANRRV 356

Query: 221 YRAVLVALSDR------DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL 274
            + V V    R      +  +  I      +  ++F   +    R    L    ++V  +
Sbjct: 357 SQTVQVLDDGRAKERALNTFLRTIQAQKTNEKILIFALYKKEAQRVENTLRRWGYRVSGI 416

Query: 275 SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
            G+LSQ +R  +L+  +     + +ATDVAARG+D+P++E VI+       E+ +HR GR
Sbjct: 417 HGDLSQHDRLASLEAFKTAETPLLVATDVAARGLDIPNVEYVINYTFPLTIEDYIHRIGR 476

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFR---EANVSVVWE 370
           TGR G+ G ++       +  A  L R   +AN  V  E
Sbjct: 477 TGRGGKSGKAITFFTDEDKAHAGELIRVLKDANQPVPKE 515


>gi|157135755|ref|XP_001663578.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
 gi|108870126|gb|EAT34351.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
          Length = 727

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 8/372 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F + P  +     L +  Y   T++Q   + P L+ KD+L +A+TGSGKT+AF + + 
Sbjct: 62  SSFSDFPLSKKTLGGLKQGQYHKPTAIQRESILPALQGKDILAAAKTGSGKTLAFLIPVF 121

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L      ++      AL I PTRELA+Q+   +  +         + IGG ++  E+ 
Sbjct: 122 EKLYTNQ--WTKLDGLGALIITPTRELALQIFETVAKIGKLHDFTTGLIIGGQNLKAEKN 179

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L     I+      L    +    + ++LK +VLDEAD  LDLGF   +  I+++ P +
Sbjct: 180 RLHQLNIIICTPGRLLQHMDQNPLFDCTNLKILVLDEADRCLDLGFESAMNAIIENLPSE 239

Query: 180 RRMLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           R+ L+FSAT + ++             +  +   +    + +    V V L  +   + +
Sbjct: 240 RQTLLFSATQTKSVKDLARLNLRNPQYIAPHEKEQYTTPTRLQQNYVAVELGQKLTMLWS 299

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGRA 295
            L+ H  +  IVF +T   V  F +V  +     +   L G ++Q+ R+           
Sbjct: 300 FLKAHSKQKIIVFFATCKQVKYFYEVFRKLRPSTLLLPLYGGMNQERRNKIYTEFCTKSN 359

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
              +ATDVA+RG+D P +  V+  +   +    +HR+GRT R    G S+ V+    +  
Sbjct: 360 VCLLATDVASRGLDFPKVNWVVQLDCPEDANQYIHRAGRTARLNTSGESLLVLLPQEEGG 419

Query: 356 AERLFREANVSV 367
             ++   + V +
Sbjct: 420 VVKMLERSKVPI 431


>gi|227514534|ref|ZP_03944583.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227087091|gb|EEI22403.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 460

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 202/466 (43%), Gaps = 15/466 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  AL +  +   T+VQ  ++   L  K V+  ++TGSGKT AF L +
Sbjct: 2   IESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVH 115
            S L   N          A+   P+RELA Q+     +L         +     G    H
Sbjct: 62  FSQLAPNNQTV------QAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEH 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +  +    +V+GTPGR+ D I  + L+I      V+DEAD  LD+GF + ++ I   
Sbjct: 116 QVEQLNRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAAR 175

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K +M++FSATI   +    K Y ++ V   I +E   + +++   +     D+++ +
Sbjct: 176 FPEKLQMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLV 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +TR   +     L E   +V  + G L  + R   ++ +RD   
Sbjct: 236 YRLLTLGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGIDL  + LV++ ++ S+ E  +HR GRTGRA   G ++ +        
Sbjct: 296 QYIVATDLAARGIDLEGVSLVLNDDIPSDLEYFVHRVGRTGRANMAGTAITLYAPAEDVL 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHD 412
            E+L  E  ++ + +   +   +   D  R     +    LD       K     +    
Sbjct: 356 IEKLE-ERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGY 414

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
             +I        R  +   +          R +     RA +  G 
Sbjct: 415 KRRIKQRIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR 460


>gi|311257035|ref|XP_003126920.1| PREDICTED: ATP-dependent RNA helicase DDX19B-like isoform 1 [Sus
           scrofa]
          Length = 479

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSQVEPAN------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|260905466|ref|ZP_05913788.1| putative DEAD-box RNA helicase [Brevibacterium linens BL2]
          Length = 598

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 121/376 (32%), Positives = 188/376 (50%), Gaps = 5/376 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++  P+V+ E+L   G +N   +Q+  L   L  +DVL   +TGSGKT+AF + + 
Sbjct: 32  QTFTDLGVPEVLTESLRAEGKINAFPIQQDTLPDTLAGRDVLGRGKTGSGKTLAFSIPMV 91

Query: 60  STLLAENDRFSPA-SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
           + L A     S     P  L +APTRELA Q+   ++ L    G+      GGV   R+ 
Sbjct: 92  TRLAAAKSAGSKRSRPPRGLILAPTRELATQITNVVDPLAQAYGMTTTTIFGGVKQKRQE 151

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L  G  IVV  PGRL D ++   +++ H++  VLDEAD M DLGF   +  IL  +P+
Sbjct: 152 VALNAGVDIVVACPGRLEDLLQQGLVSLDHIEVTVLDEADHMADLGFLPSVTRILGKTPE 211

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + + FSAT+   +  L + +  + V  ++   +   SD+ +    V   +++   +  
Sbjct: 212 HGQRMFFSATLDNDVNKLVRRFLHNEVLHSVDDPSSHVSDMTHHVFEVPDDNKNE--LVH 269

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
               G    I+F  T+    RF + L       V L G LSQ  R   L    +G  +V 
Sbjct: 270 RLASGTGRRIMFTRTKHRAKRFARQLTAQGIPAVDLHGNLSQGARDRNLAAFSEGDVKVL 329

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +ATDVAARG+ +  +ELV+H +  +  +  LHRSGRT RAG  G  V ++    +R  + 
Sbjct: 330 VATDVAARGVHVDSVELVVHVDPPTEHKAYLHRSGRTARAGSSGEVVTIMLPEQRRDTQT 389

Query: 359 LFREANVSVVWEPAPS 374
           L R+A + V  +   S
Sbjct: 390 LLRKAAIKVTPQKVTS 405


>gi|325972264|ref|YP_004248455.1| DEAD/DEAH box helicase [Spirochaeta sp. Buddy]
 gi|324027502|gb|ADY14261.1| DEAD/DEAH box helicase domain protein [Spirochaeta sp. Buddy]
          Length = 378

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 183/370 (49%), Gaps = 6/370 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + +   L          +Q  ++   L ++DVL  A+TGSGKT+++ L +   +  + 
Sbjct: 8   ISESLCAVLQRENITTPYPIQTEVIPAVLSKRDVLGIAKTGSGKTLSYVLPILMNI--QK 65

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGA 125
                +     L + PTRELA QV         ++G+ +        V    + +  N  
Sbjct: 66  KVVLKSRHIQVLVMVPTRELAAQVHSVFSQYIHESGLRIKTLAAFGGVSINPQMMAMNNV 125

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V TPGRL + +    +N+S ++ VVLDEAD+ML +GF  +++ +    P+KR+ L+F
Sbjct: 126 SILVATPGRLLELVSLHAVNLSSVEMVVLDEADKMLTVGFEKEMDQVFALLPEKRQNLLF 185

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT++  I +L K    D + + I  E+     I   A  +    +   +  +++    +
Sbjct: 186 SATLNDQIQSLEKVLLHDPLVIKIEEESDALDYIHQSAYFIPEEQKGPLLRYLIKSQDMQ 245

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF S+ A   R  + L ++  +  ++  + +Q  R+  L+  + G  RV + TD+ +
Sbjct: 246 QVLVFTSSVARADRVVEKLQKNGIEARSIHSKKTQGARTELLRDFKLGYLRVLVTTDLLS 305

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANV 365
           RGID+  L  VI+ EL  +P N +HR GRTGRA R G ++ ++  + +   + + ++   
Sbjct: 306 RGIDIEFLPFVINYELPRSPINFIHRIGRTGRAERFGEAITLVSPSEEAHFKVIEKKMKK 365

Query: 366 ---SVVWEPA 372
               + WEP 
Sbjct: 366 KVPRIAWEPL 375


>gi|73621050|sp|Q4R8K5|IF4A1_MACFA RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|67968411|dbj|BAE00567.1| unnamed protein product [Macaca fascicularis]
          Length = 406

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 188/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F   A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTASAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|156545118|ref|XP_001602070.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Nasonia
           vitripennis]
          Length = 821

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 113/396 (28%), Positives = 195/396 (49%), Gaps = 32/396 (8%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
              P+ I + + + GY +LT +Q   +   L+ +D++  A+TGSGKT+AF + L   +  
Sbjct: 398 SGFPKEILDIIDKVGYKDLTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLLWITS 457

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R       P ++ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 458 LPKIERTDEVDQGPWSIILAPTRELAQQIEEETNKFGQPLGIRTVVVVGGLSREEQGFRL 517

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +VLDEAD M+D+GF  D++ IL+  P    
Sbjct: 518 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNL 577

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+  A+  LA+ Y +    V I S  +  
Sbjct: 578 KPDNEDAENEEKLLANYNSRKKYRQTVMFTATMPAAVERLARTYLRRPAVVYIGSIGKPT 637

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
              +    ++  +D+   ++ IL        I+F + +       + L +  +    L G
Sbjct: 638 ERTEQIVHIMGEADKRRKLMEILSRGVEPPVIIFVNQKKGADVLARGLEKLGYNACTLHG 697

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 698 GKGQEQREYALASLKGGSKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 757

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
           RAG+ G+++    ++       LF +   +++  P 
Sbjct: 758 RAGKAGVAISFCTKDDSH----LFYDLKQTILASPI 789


>gi|254565085|ref|XP_002489653.1| Component of the TREX complex required for nuclear mRNA export
           [Pichia pastoris GS115]
 gi|238029449|emb|CAY67372.1| Component of the TREX complex required for nuclear mRNA export
           [Pichia pastoris GS115]
 gi|328350072|emb|CCA36472.1| ATP-dependent RNA helicase UAP56/SUB2 [Pichia pastoris CBS 7435]
          Length = 436

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 175/378 (46%), Gaps = 13/378 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   DVL  A++G GKT  F L+    L    
Sbjct: 58  LRPELTRAIRDCGFEHPSEVQQVCIPQSILGNDVLCQAKSGLGKTAVFVLSTLQQLDPSP 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDLQ 122
              S       L I  TRELA Q+  E          V                  ++  
Sbjct: 118 GEVS------VLVICNTRELAYQIKNEYARFSKYMPEVKTEVFYGGTQIAKDEEILKNKD 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +R K +N+ ++K  V+DE D++L+    R D++ I   +P +++
Sbjct: 172 TCPHIVVATPGRLNALVRDKVMNVKNVKNFVIDECDKVLENLSMRRDVQSIFRETPFQKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS-DRDNAIVNILR 240
           ++MFSAT+S  +  + K + ++ + + + +E +       +  +     D++  +  +L 
Sbjct: 232 VMMFSATLSTEMRKICKKFMQNPLEIYVDNEAKLTLHGLQQYYIKLTEADKNRKLSELLD 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +        ++L E+ F  +++   L QQER    +  ++   R+C+A
Sbjct: 292 SLDFNQVIIFVKSVKRAEYLNRLLNENNFPSISIHSGLPQQERIERYKSFKEFNKRICVA 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA-ERL 359
           TDV  RGID+  + L I+ +L +     LHR GR GR G KG+++  I  +      E++
Sbjct: 352 TDVLGRGIDVERINLAINYDLPNESAQYLHRVGRAGRFGTKGLAISFISSDEDNTILEQI 411

Query: 360 FREANVSVVWEPAPSVEA 377
               +V +   PA  V+A
Sbjct: 412 QDRFDVKIAEFPAEGVDA 429


>gi|148224339|ref|NP_001082033.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Xenopus laevis]
 gi|10764780|gb|AAG22818.1|AF302422_1 RNA helicase II/Gu [Xenopus laevis]
          Length = 800

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 105/419 (25%), Positives = 176/419 (42%), Gaps = 17/419 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F   P  +   +    +G   L  +Q    +     KDV+V A+TG+GKT +FG+ L   
Sbjct: 223 FSKFPISKDTIKNXQAKGVTYLFPIQSKTFHTVYSGKDVVVQARTGTGKTFSFGIPLVER 282

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +    +   AP  + + PTRELA+Q+  EL  +  K    VA   GG    ++   +
Sbjct: 283 LSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKKL--KVACFYGGTPYQQQVFAI 340

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           ++G   +VGTPGR+ D ++   L+++ LK VVLDE D M D+GF + +E IL    K   
Sbjct: 341 KDGIDFLVGTPGRIRDLVQNYRLDLTALKHVVLDEVDMMFDVGFSEQVEEILSVRYKPDP 400

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI------ 235
                  +  A                   +         +A +                
Sbjct: 401 EENPQTLLFSATCPDWMYNVAKKYMRKQYEKVDLVGHRSQKAAITVEHLAIECNRSQKAA 460

Query: 236 ----VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
               +  +        I+FC ++      +            L G+L Q+ER   L+  R
Sbjct: 461 VLGDIVQVYSGSHGKTIIFCDSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFR 520

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
            G   V IAT+VAARG+D+P+++LV+        +  +HRSGRTGRAGR G+ + +    
Sbjct: 521 QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRTGVCISLYEPW 580

Query: 352 MQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            +     + R   ++      PS+  + +  +   ++    LD++  D  +       +
Sbjct: 581 EKHYLRNVERSTGITFKRVGIPSLMNVAKSSSADAIKS---LDTVPADVIEHFKEYAQE 636


>gi|84997373|ref|XP_953408.1| DEAD-box family helicase [Theileria annulata strain Ankara]
 gi|65304404|emb|CAI76783.1| DEAD-box family helicase, putative [Theileria annulata]
          Length = 570

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 188/465 (40%), Gaps = 23/465 (4%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL---------A 64
           A+SE GY N T +Q  ++   L  KD+L+    GSGKT +F +     L+          
Sbjct: 92  AISEMGYQNPTIIQSKVIPLALEGKDLLIMMIQGSGKTASFLIPTLQRLVVSGVLKQLTK 151

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           E   ++      AL I PTRELA Q  +  + L         +  GG+ +  +   L+  
Sbjct: 152 EKQAYNTRFGTKALVILPTRELAAQCFQVFKSLSKYLSSKAILLTGGIPIKEQENRLRQF 211

Query: 125 AH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRRM 182
              I+      L   I    +N+ +++ V++DEAD++L+     + ++ +   +  ++ M
Sbjct: 212 PETIICTPGRALDMLINSSSINVENIEVVIMDEADKLLELGFRDECLQVLKYCNRNRQTM 271

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L  +         ++ +                 +      ++     R+   + +   +
Sbjct: 272 LFSATLTEETKELVSLSLVNPVYVKVDDPTKVSRTLEFEMMMIPKEEYREACALYLCTKY 331

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  T+ S  R   +      +   L G LSQ +R  +++  ++G     +A++
Sbjct: 332 SKDKTILFFQTKRSAHRMFLIFNLLNMKCGELHGNLSQSKRFESVERFKNGEIDYLLASE 391

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           +A+RG+D+P ++ VI+ +L ++    +HR GRT R G  G ++ +   + QR   +LF +
Sbjct: 392 LASRGLDIPGVKTVINVDLPTDITRYIHRVGRTARMGSHGKAITLYV-DEQRSQVKLFLK 450

Query: 363 ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLR 422
               +    + + + +      +      +   I   E+K+ ++LL ++  + I     +
Sbjct: 451 KTSDIGATLSKNKKKVTSATLNK------YKTKIDELEEKIKELLLEENIEKDI-----K 499

Query: 423 IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSS 467
           +  A L    +         R +      + +    +    +   
Sbjct: 500 MCDATLKTHGDQDREKRKWFRSKKDKKMASKEEFEEANRKTQRMV 544


>gi|303290931|ref|XP_003064752.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453778|gb|EEH51086.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 421

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 103/389 (26%), Positives = 173/389 (44%), Gaps = 34/389 (8%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A S   +   + +Q       L  +D++  A TGSGKT+AFGL   + +L++
Sbjct: 4   SVPPNVLAATSA--FQRPSPIQAQSWPIVLSGRDMVGIAATGSGKTLAFGLPALTQILSQ 61

Query: 66  NDRFSPASAP----------LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGV 112
                   +P          + L +APTRELA Q  R  +       V            
Sbjct: 62  ARSRFRLRSPTTPPAKPGQPICLVLAPTRELAQQTARVFDEAGKSCNVRCVCVYGGAPKW 121

Query: 113 SVHRERRDLQNGAH----------IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
              ++ R +    +          +VV TPGRL D +    + +  +  +VLDEAD MLD
Sbjct: 122 EQKKQARSIHWSPYDPMREGGGCAVVVATPGRLRDFMNDGDVKLDRVTTLVLDEADRMLD 181

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
           LGF  +I  I  ++   R+ +MFSAT   +I       +        A   +    I   
Sbjct: 182 LGFEPEIREIAGATRADRQTVMFSATWPMSIQGAF--MRDPVKVRIGAEGLKASHSITQI 239

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
             +V  +D+D+ +  +L+ +          T  ++           +  V + G+++Q++
Sbjct: 240 VEVVEPNDKDSHLTRLLKKYCGGQT----PTPRTLIFALYKKERQNWACVPIHGDMTQRD 295

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R  ++   +DG   + +ATDVAARG+D+  +E VI+       E+ +HR GRTGRAG+ G
Sbjct: 296 REESVAAFKDGSKPLLVATDVAARGLDIKGVEYVINYTFPLTTEDYVHRIGRTGRAGKTG 355

Query: 343 MSVFVIPQNMQRRAERL---FREANVSVV 368
           ++  +   + + RA  L    REA   V 
Sbjct: 356 IAHTLFTVHDKARAGELANVLREAGAEVP 384


>gi|294660132|ref|XP_462573.2| DEHA2G23782p [Debaryomyces hansenii CBS767]
 gi|218512022|sp|Q6BGU8|DBP8_DEBHA RecName: Full=ATP-dependent RNA helicase DBP8
 gi|199434486|emb|CAG91086.2| DEHA2G23782p [Debaryomyces hansenii]
          Length = 441

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/431 (25%), Positives = 194/431 (45%), Gaps = 24/431 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE +   + + EAL+       T++Q A +   L+  D +  A+TGSGKT+AF   + +
Sbjct: 2   SFEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLT 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
               +       S    L + PTRELA+Q+  +   L +   + V+V +GG  + ++  +
Sbjct: 62  QWSEDP------SGIYGLVLTPTRELALQIAEQFAALGSSMNIKVSVIVGGEDIVKQALE 115

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           LQ   H VV TPGRL DHI   G +       +K ++LDEAD +L   F  D+E   +  
Sbjct: 116 LQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLLSNSFGGDLERCFNIL 175

Query: 177 PKKRRMLM----------FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
           P   +               A     +           V             + Y  V  
Sbjct: 176 PSTDKRQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAIPSTLSVKYVFVPS 235

Query: 227 ALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
            + +     +  L  +    +I+F +  A+     + L +  F+V +L  E+ Q ER+N+
Sbjct: 236 YVKEAYLHSILNLPQYSDSLSIIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNS 295

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           L   + G A++ IATDVA+RG+D+P +ELV++ ++ ++ ++ +HR GRT RAGRKG ++ 
Sbjct: 296 LHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAIS 355

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQR--ILQDPLFLDSIQGDEKKMV 404
           ++ +    R   +    N  +      S   + +    +  + +   F+D  + +  +  
Sbjct: 356 IVAEKDVDRILAIEERINKKMDLIEDISDNKVIKDSLNKTSVAKREAFMDMDRENFGEKR 415

Query: 405 DVLLAKHDPEK 415
            +  +K    +
Sbjct: 416 KINKSKRQANE 426


>gi|169602116|ref|XP_001794480.1| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
 gi|160706086|gb|EAT89141.2| hypothetical protein SNOG_03936 [Phaeosphaeria nodorum SN15]
          Length = 727

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/404 (26%), Positives = 183/404 (45%), Gaps = 27/404 (6%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P  +   +   GY   ++VQ A +   L+ +D++  A TGSGKT +F L L   +  
Sbjct: 313 SGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDLIGVAVTGSGKTASFVLPLLVYISQ 372

Query: 65  END--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                  + A  P A+ +APTRELA Q+  E     A  G   AV +GG S+  +   ++
Sbjct: 373 LPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFAAPLGFNTAVIVGGHSIEEQAFQMR 432

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           +GA IV+ TPGRL D I  + L +S    V++DEAD M+D+GF + +  ILD+ P     
Sbjct: 433 DGAEIVIATPGRLVDCIERRMLVLSQCTYVIMDEADRMIDMGFEEPVNKILDALPVTNEK 492

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--------------------YR 222
               A   P         Q       + +   + +                        R
Sbjct: 493 PDSDAAEDPNAMKRGMYRQTMMYTATMPTAVERIARKYLRRPAIVTIGNVGEAVETVEQR 552

Query: 223 AVLVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
              +   ++    +  +          IVF + + +     + +    F  V L G  +Q
Sbjct: 553 VEHIQGEEKRKKRLQEILNSGEFTPPIIVFVNIKRNCDAIARDIKNMGFSSVTLHGSKTQ 612

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
           ++R  AL  +R+ R  V +ATD+A RGID+ D+ LV++  ++++ E+  HR GRTGRAG+
Sbjct: 613 EQREAALAQLREHRVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYTHRIGRTGRAGK 672

Query: 341 KGMSVFVIPQNM---QRRAERLFREANVSVVWEPAPSVEAIRER 381
            G+++              +++  ++ +S V E     EA +++
Sbjct: 673 SGVAITFWGNEDADVLYDLKQMLTKSQISKVPEDLRKHEAAQQK 716


>gi|121606431|ref|YP_983760.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
 gi|120595400|gb|ABM38839.1| ATP-dependent RNA helicase DbpA [Polaromonas naphthalenivorans CJ2]
          Length = 467

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 122/405 (30%), Positives = 201/405 (49%), Gaps = 14/405 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +   L++ GY ++T +Q A L   L  KD++  A+TGSGKT AF       L   
Sbjct: 12  SLPAHVLANLTQLGYTSMTPIQAAALPVALLGKDLIAQAKTGSGKTAAF------ALALL 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYA-KTGVVVAVCIGGVSVHRERRDLQNG 124
            +  +   A  A+ + PTRELA QV  E+  L   +  + V    GGV++  +   L++G
Sbjct: 66  ANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVVTLCGGVALRNQIASLEHG 125

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           AHIVVGTPGR+ DH+    L+++ +  +VLDEAD MLD+GF DDI  +    PK+R+ L+
Sbjct: 126 AHIVVGTPGRIMDHLGRGNLDLAAMNTLVLDEADRMLDMGFFDDIATVAKQCPKERQTLL 185

Query: 185 FSATISP---AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           FSAT       I+       +         +++                R +A+  +L +
Sbjct: 186 FSATYPEGIAKISQQFMKNPQTVTVQAQHEKSKIRQRWYQVEDTDHDEARLDAVARVLNH 245

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
           +   + + FC+T++      ++L +  F  +AL GEL Q+ER   L    +    V +AT
Sbjct: 246 YRPVSTLAFCNTKSQCRALVQLLKDKGFIALALYGELEQRERDQVLVQFANRSCSVLVAT 305

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+D+  LE+VI+ +++ + E  +HR GRTGRA  +G ++ +   +      ++  
Sbjct: 306 DVAARGLDISQLEMVINVDVTPDSEIHIHRIGRTGRADEEGWAISLASMDEMGSVGKIEV 365

Query: 362 EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
                  W     +    +      L+ P+    I G  K+ +  
Sbjct: 366 LQKAESEWHKLDELTPASKE----PLRPPMATLQIVGGRKEKIRA 406



 Score = 52.3 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 463 FKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFV----EVSADGV 518
               +   +  G K+K  A  ++  L   +G  R+ +G I V    T+V     ++ D +
Sbjct: 388 RPPMATLQIVGGRKEKIRAGDVLGALTGEAGFTREQVGKINVNEFSTYVAVERSIAGDAL 447

Query: 519 DLLRRTVKLDKGIQLKYL 536
             L       K ++++ +
Sbjct: 448 HKLAMGRVKGKSVRVRLM 465


>gi|116003979|ref|NP_001070349.1| probable ATP-dependent RNA helicase DDX10 [Bos taurus]
 gi|115305270|gb|AAI23580.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
 gi|296480316|gb|DAA22431.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Bos taurus]
          Length = 876

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 111/422 (26%), Positives = 192/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++ A     L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV--ALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       V   AL G   Q  R          R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEK 425

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 426 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFISYIRSVYLMKD 485

Query: 413 PE 414
            E
Sbjct: 486 KE 487


>gi|307205525|gb|EFN83831.1| Probable ATP-dependent RNA helicase DDX20 [Harpegnathos saltator]
          Length = 1226

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 167/362 (46%), Gaps = 14/362 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ I + LS  G+   + +Q   +       D+++ A++G+GKT  FG+     L  + 
Sbjct: 31  LPEKIMDGLSFAGFERPSPIQLKAIPIGRCGFDLILRAKSGTGKTAVFGIIALEILDIQ- 89

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S+P  L +APTRE+A+Q+   L+ + ++   +      G     + +   N  H
Sbjct: 90  -----ISSPQVLIVAPTREIAIQISNVLKTIGSEIKGLKVEYFVGGLSVEDDKKRLNECH 144

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           + VG PGR+   I  K L +S ++  VLDEAD++++  F+ DI +I       ++++  S
Sbjct: 145 VAVGAPGRIKHLIDKKLLKVSTVRLFVLDEADKLMETNFQKDINYIFSKLSLNKQVIASS 204

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV--------LVALSDRDNAIVNI 238
           AT    +    + Y    V ++   +      I    V        +  +  + + +  I
Sbjct: 205 ATYPGDLEKFLEMYMCSPVLISPDLDGPILVGIKQFLVVVSSHLNAMKQVQIKVDELQKI 264

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                 K ++VF + ++     +  L    F    + G     +R   ++ +R+   R+ 
Sbjct: 265 FTKIPFKQSLVFSNYQSRAQSVSNKLNSMGFSSTYIIGSQDMAKRLEIMEKLRNFNCRIL 324

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           + TD+ ARGID+ ++ LVI+ ++  +    LHR GR GR G  G+S+ ++ +N  +    
Sbjct: 325 MTTDLTARGIDVENVNLVINLDIPMDAATYLHRIGRAGRYGTHGISITIVSENELQSFRE 384

Query: 359 LF 360
           L 
Sbjct: 385 LL 386


>gi|71901632|ref|ZP_00683711.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
 gi|71728608|gb|EAO30760.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
           fastidiosa Ann-1]
          Length = 544

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 180/367 (49%), Gaps = 4/367 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +   L+   +   T +Q   L   L  +D+   AQTG+GKT+AF + + + LL+ 
Sbjct: 16  DLHPALLTGLTRAAFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSS 75

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
               +     P AL +APTRELA+Q+  +        G+  A+  GGV   ++R  L+ G
Sbjct: 76  PGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVDYDKQREMLRKG 135

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLK-AVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           A +V+ TPGRL D+++   +    +    VLDEAD M DLGF  DI FIL   P++    
Sbjct: 136 ADVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQ 195

Query: 184 M--FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT+S  +  LA  Y  +  ++   +E+   + +  R    A  ++   ++ +L  
Sbjct: 196 TLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLGLLSR 255

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                 +VF +T+  V    + L E  ++V  LSG++ Q++R   L   + G+  + +AT
Sbjct: 256 SEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVAT 315

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  V + +L  + E+ +HR GRT R G  G ++    +        +  
Sbjct: 316 DVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEA 375

Query: 362 EANVSVV 368
                + 
Sbjct: 376 YIEQKIP 382


>gi|320586497|gb|EFW99167.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
          Length = 662

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 159/409 (38%), Gaps = 60/409 (14%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F++  +   +   +   GY   T +Q   +   ++  DV+  AQTGSGKT A+ + +
Sbjct: 160 IENFDHAGLHPAMRRNVQLAGYNVPTPIQMYCIPAIVQGFDVMGIAQTGSGKTAAYLIPI 219

Query: 59  ASTLLAENDRFSPASA----------------PLALAIAPTRELAVQVGRELEWLYAKTG 102
            + L+ +  + +                    PL + ++P+REL +Q+  E      +T 
Sbjct: 220 LNNLMGKAKKLAAPRPNPATYRHGFDPIARAEPLVVIVSPSRELGIQIFNEARKFCYRTM 279

Query: 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           +   + +    ++   R                             ++ +VLDEADEML 
Sbjct: 280 LRPLIDVMNRPMNLSFR----------------------------RVRYMVLDEADEMLH 311

Query: 163 LGFRDDIEFI----LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
             + +D+  I             M+  +    P      +    D +   +      H +
Sbjct: 312 DDWGEDLAKILSGGDSEDANINYMMFSATFPKPLRDLAKEYLANDHIHFRVGRAGSSHGN 371

Query: 219 IDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGEL 278
           I         +++  A+V +L        I+F + +        +L        ++    
Sbjct: 372 IQQVISYTDPANKRKAVVELLNSIPPGRTIIFVNRKQMADELDDLLYNLGLPCTSIHAGR 431

Query: 279 SQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS----NPENLLHRSGR 334
           +Q ER +A++  R G   + IAT VAARGID+ ++  VI+ +L S      E  +HR GR
Sbjct: 432 TQMEREDAMRAFRSGECPILIATGVAARGIDVHNVNHVINYDLPSCDHGGIEEYVHRIGR 491

Query: 335 TGRAGRKGMSVFVIPQNMQRRAERLFR---EANVSVV---WEPAPSVEA 377
           TGR G +G++        +  A  L R   E   ++     +  P  EA
Sbjct: 492 TGRIGHRGLATSFYTDRDEPIASVLTRTLLETKQTIPDFLEQYVPEGEA 540


>gi|281352202|gb|EFB27786.1| hypothetical protein PANDA_013869 [Ailuropoda melanoleuca]
          Length = 400

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 32  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 91

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 92  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 145

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 146 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 205

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 206 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 265

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 266 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 325

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 326 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 385

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 386 NTSIEEMPLNVADLI 400


>gi|104774414|ref|YP_619394.1| DEAD-box ATP dependent DNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423495|emb|CAI98397.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 453

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 178/357 (49%), Gaps = 9/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L++ G+   T VQE ++   L+ + V+V A TGSGKT A+ + + + +  + 
Sbjct: 10  LRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAIDED- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQN 123
                A    A+  AP+RELA Q+ R    L   +G+ +A+     G     +  R  QN
Sbjct: 69  -----ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQN 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M 
Sbjct: 124 EPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMS 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI   +T   + Y      + I +       I    + +   DR   +  +L    
Sbjct: 184 AFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQ 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+
Sbjct: 244 PYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDL 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           AARGIDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++ +    R   L 
Sbjct: 304 AARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGALE 360


>gi|58579756|ref|YP_198772.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424350|gb|AAW73387.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 429

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 200/383 (52%), Gaps = 8/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P +   AL+  G   LT +Q A++ P L  +D++V+AQTGSGKT+A+ L L    L   
Sbjct: 12  LPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQAP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNG 124
           ++         L + PTREL  QV + L  L A       +    GG +++ +   L+ G
Sbjct: 72  EQVPRVLG--GLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S ++ +VLDEAD +LDLGF  +I+ IL   P +R+ ++
Sbjct: 130 ADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT  PAI +LAK   +D +R+ I +       I  RA+ V    R   + ++L+ H  
Sbjct: 190 VSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQEHAW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R +  +  + L++   + + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 250 PQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L  +  +  HR GRT RAG  G ++  +     ++   + +   
Sbjct: 310 ARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGKAISFVTAERAQQWRLIEKRQG 369

Query: 365 ----VSVVWEPAPSVEAIRERDA 383
                SV+    PS      RDA
Sbjct: 370 LRVPTSVIEGFEPSPAEASARDA 392


>gi|302802223|ref|XP_002982867.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
 gi|300149457|gb|EFJ16112.1| hypothetical protein SELMODRAFT_52119 [Selaginella moellendorffii]
          Length = 431

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 101/407 (24%), Positives = 170/407 (41%), Gaps = 41/407 (10%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++    ++ + + +  +   T VQ+  +   L  +D++  AQTGSGKT AF   +  
Sbjct: 14  SFDDLSLHSILNDNIRKCRFAVPTLVQKYAIPICLAARDLMACAQTGSGKTAAFCFPIIE 73

Query: 61  TLLAE----NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            +L E     +     S PLAL ++PTRELA Q   EL    + + V             
Sbjct: 74  GILREPVPGREGRRRVSIPLALILSPTRELAQQASIELSLPISFSFVSFPRSFWWQIADE 133

Query: 117 ERRDLQNG--------------------AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
             +                           I+V TPGRL D +  + + +  LK + LDE
Sbjct: 134 AFKFCYQTGVRVGVVYGGTRLWSDNLGGVDILVATPGRLNDLLDREMVELRKLKYLTLDE 193

Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA-----S 211
           AD MLD+GF   I  I++ S      L  +   S       +    + +R +        
Sbjct: 194 ADRMLDMGFEPQIRRIVEESGMPGAELRQTLMFSATFPKKIQRLAGEFLRKDYVFLAIGE 253

Query: 212 ENRQHSDIDYRAVLVALSDRDNA-------IVNILRYHGAKNAIVFCSTRASVSRFTKVL 264
                S I+   + V  + + +                  +  +VF  T+         L
Sbjct: 254 VGSSTSRIEQEIIFVQRNQKHDCLGMVIDRQQMHGSKSNVRKTLVFVGTKLKADDLEIWL 313

Query: 265 AEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
               +  +A+ G+ +Q+ER  AL+  + G   + +AT+VA+RGID+PD+  VI+ +L +N
Sbjct: 314 RSRGYVAIAIHGDKTQEERRRALKSFKSGSTPLLVATEVASRGIDIPDVSHVINFDLPTN 373

Query: 325 PENLLHRSGRTGRAGRKGMSVFVIPQNM---QRRAERLFREANVSVV 368
            ++ +HR GRTGRAG++G +  +          +   L    N  V 
Sbjct: 374 IDDYVHRIGRTGRAGKRGFATALFCDGDAPLAHKLVHLLESCNQQVP 420


>gi|225442993|ref|XP_002268833.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743441|emb|CBI36308.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVA 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L + H++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   + Q+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|326318063|ref|YP_004235735.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374899|gb|ADX47168.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 615

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 122/418 (29%), Positives = 186/418 (44%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDL-----REK--DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T VQE  +   +       K  D++VS+QTGSGKT AF L + 
Sbjct: 59  LAPELVQAVADLGYTQPTGVQERAIPLAMGAGADAGKFIDLMVSSQTGSGKTAAFLLPVL 118

Query: 60  STL------------------------------------LAENDRFSPASAPLALAIAPT 83
            TL                                       N R   A+ P AL + PT
Sbjct: 119 HTLIGQQAAAQATARAEYEAAAAEALARGETAPKRAKRKDPTNPRHFKAATPGALILCPT 178

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 179 RELAQQVAHDAIELVRHCRGLRVANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQRSMQ 238

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  I + + ++++ +MFSAT +P I  LA     D
Sbjct: 239 IKLDQVQFLVVDEADRMLDLGFSDDLAEINELTSQRKQTMMFSATFAPRIQQLAMRVMHD 298

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                      + + +  +             +   + + LR      AIVF ST+    
Sbjct: 299 GGASVKKVQIDSPQEKHANIKQTLFWADNAQHKRKLLDHWLRDTTINQAIVFASTQVECD 358

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 359 GLANDLQQEGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 418

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR G++V       +R+   +   +      +    +E
Sbjct: 419 FGLPMKAEDYTHRIGRTGRAGRDGLAVTFAEFRDRRKIFDIEGYSRQQFKTDVIAGLE 476


>gi|70945373|ref|XP_742513.1| RNA helicase [Plasmodium chabaudi chabaudi]
 gi|56521539|emb|CAH76133.1| RNA helicase, putative [Plasmodium chabaudi chabaudi]
          Length = 649

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 110/397 (27%), Positives = 186/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAENDRFS--- 70
           + +  Y   T +Q+  L+  + + D++  AQTGSGKT  + L + +  LL +  + +   
Sbjct: 245 IKKVHYDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYE 304

Query: 71  -----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                          P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 305 ENNKNSNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLS 364

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++     
Sbjct: 365 NLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMP 424

Query: 180 ------------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                   R+ +MFSAT    I  LAK+Y  +   + +      
Sbjct: 425 GNDNDSYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGST 484

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V     ++ + ++ +L  +     I+F  T+       + L       V + 
Sbjct: 485 NEYIKQNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIH 544

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 545 GDKSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 604

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   +  + +   + L     E N  +  
Sbjct: 605 GRAGNIGIATSFVNDDNKNIFKDLLATLEECNQEIPR 641


>gi|6014947|sp|Q61655|DD19A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX19A; AltName: Full=DEAD
           box RNA helicase DEAD5; Short=mDEAD5; AltName: Full=DEAD
           box protein 19A; AltName: Full=Eukaryotic translation
           initiation factor 4A-related sequence 1
 gi|407992|gb|AAA53629.1| RNA helicase [Mus musculus]
          Length = 478

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKVSEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIV 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|299115404|emb|CBN74235.1| DEAD box helicase [Ectocarpus siliculosus]
          Length = 584

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 180/385 (46%), Gaps = 16/385 (4%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +K F +  +P  + + ++ RG+   T +Q          +DV+  A+TGSGKT+ F L  
Sbjct: 159 LKDFASSGMPAEVMKYVTLRGWDKPTLIQAHCWPVLNAGRDVIGIAETGSGKTLGFSLPA 218

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE- 117
            S +         +  P  L +APTRELA+Q    +       G+      GGV    + 
Sbjct: 219 MSKIFKNMKAGKKSEGPYMLVLAPTRELALQSAEVIAEAGGHCGIKSVCVYGGVPKRDQK 278

Query: 118 ----RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL 173
                        +VV TPGRL D +     ++S + ++VLDEAD MLDLGF  D+  I+
Sbjct: 279 IALGGGRGGGCVQVVVATPGRLKDLVGEGACDLSKVTSLVLDEADRMLDLGFEQDVRDII 338

Query: 174 DSS--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASE----NRQHSDIDYRAVLVA 227
                P KR+  MFSAT   +I  LA  +  D V+V + ++    N +            
Sbjct: 339 GYCAGPSKRQTAMFSATWPKSIRDLAAEFLADPVKVTVGADDLTANYRVEQHVEVVEERE 398

Query: 228 LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
              +   ++           +VF   +   +R  + L  + F  VA+ G+  Q +R  AL
Sbjct: 399 RDGKLLRLLATCHKSRKNRVLVFALYKREAARLEQFLQRNNFDAVAVHGDKGQADRERAL 458

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
              +     + +ATDVAARG+D+PD+E VI+       E+ +HR GRTGRAG+KG+S   
Sbjct: 459 GQFKSKERPLMVATDVAARGLDIPDVEYVINYSFPLTIEDYIHRIGRTGRAGKKGVSHTY 518

Query: 348 IPQNMQRRAERL---FREANVSVVW 369
             Q  + RA  L    ++AN SV  
Sbjct: 519 FHQGDKARAGELVNVLQDANQSVPE 543


>gi|260663391|ref|ZP_05864282.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260552243|gb|EEX25295.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 460

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 202/466 (43%), Gaps = 15/466 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  AL +  +   T+VQ  ++   L  K V+  ++TGSGKT AF L +
Sbjct: 2   IESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVH 115
            S L   N          A+   P+RELA Q+     +L         +     G    H
Sbjct: 62  FSQLAPNNQTV------QAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEH 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +  +    +V+GTPGR+ D I  + L+I      V+DEAD  LD+GF + ++ I   
Sbjct: 116 QVEQLNRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAAR 175

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K +M++FSATI   +    K Y ++ V   I +E   + +++   +     D+++ +
Sbjct: 176 FPEKLQMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLV 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +TR   +     L E   +V  + G L  + R   ++ +RD   
Sbjct: 236 YRLLTLGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRMMRQIRDMDY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGIDL  + LV++ ++ S+ E  +HR GRTGRA   G ++ +        
Sbjct: 296 QYIVATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVL 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHD 412
            E+L  E  ++ + +   +   +   D  R     +    LD       K     +    
Sbjct: 356 IEKLE-ERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGY 414

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
             +I        R  +   +          R +     RA +  G 
Sbjct: 415 KRRIKQRIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR 460


>gi|224146601|ref|XP_002326066.1| predicted protein [Populus trichocarpa]
 gi|222862941|gb|EEF00448.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 178/364 (48%), Gaps = 22/364 (6%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ FE+  + Q I + ++   Y   T +Q   +   L  +D+L  A+TGSGKT AF + +
Sbjct: 113 IESFEDMCLHQSIMKDIAHHEYTRPTLIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPM 172

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRE 117
               LA+         PLA+ +APTRELA Q+ +E++           A+ +GG     +
Sbjct: 173 IQHCLAQPP-VQRGDGPLAMVLAPTRELAQQIEKEVKRFSRSLESFRTAIVVGGTKSADQ 231

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+ G  ++V TPGRL DH++    ++S +  +VLDEAD MLD+GF   I  ++ + P
Sbjct: 232 GSELRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMHNLP 291

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           +K + L+FSAT+   I TLA+ Y    V+V +   +   +++      V+ S++ + ++ 
Sbjct: 292 EKHQTLLFSATMPVEIETLAQEYLISPVQVKVGKVSSPTANVSQILTKVSASEKIDCLLA 351

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L    ++                K        +V +  +    E + AL          
Sbjct: 352 LLVEDASQA--------------EKSNQSFPLTIVFVERKTRCNEVAEALVAQGLQ---- 393

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVA+RG+D+  +  VI+ +L    E+ +HR GRTGRAG  G +             
Sbjct: 394 AVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDLFLVA 453

Query: 358 RLFR 361
           ++ +
Sbjct: 454 QIKK 457


>gi|184154996|ref|YP_001843336.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183226340|dbj|BAG26856.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 460

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 202/466 (43%), Gaps = 15/466 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  AL +  +   T+VQ  ++   L  K V+  ++TGSGKT AF L +
Sbjct: 2   IESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVH 115
            S L   N          A+   P+RELA Q+     +L         +     G    H
Sbjct: 62  FSQLAPNNQTV------QAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEH 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +  +    +V+GTPGR+ D I  + L+I      V+DEAD  LD+GF + ++ I   
Sbjct: 116 QVEQLNRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAAR 175

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K +M++FSATI   +    K Y ++ V   I +E   + +++   +     D+++ +
Sbjct: 176 FPEKLQMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLV 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +TR   +     L E   +V  + G L  + R   ++ +RD   
Sbjct: 236 YRLLTLGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGIDL  + LV++ ++ S+ E  +HR GRTGRA   G ++ +        
Sbjct: 296 QYIVATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVL 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRIL---QDPLFLDSIQGDEKKMVDVLLAKHD 412
            E+L  E  ++ + +   +   +   D  R     +    LD       K     +    
Sbjct: 356 IEKLE-ERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGY 414

Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGG 458
             +I        R  +   +          R +     RA +  G 
Sbjct: 415 KRRIKQRIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR 460


>gi|58336753|ref|YP_193338.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227903314|ref|ZP_04021119.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254070|gb|AAV42307.1| RNA helicase [Lactobacillus acidophilus NCFM]
 gi|227868943|gb|EEJ76364.1| ATP-dependent RNA helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 453

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 107/386 (27%), Positives = 185/386 (47%), Gaps = 12/386 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IFE+  I   + E L +  +V  T VQE ++   L +  V+V A TGSGKT A+ + + 
Sbjct: 3   NIFEDSRINPALQEGLKKINFVKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW---LYAKTGVVVAVCIGGVSVHR 116
           + +         A    A+   P+RELA Q+ +              +  +  G     +
Sbjct: 63  NEID------EAAHYVQAIVTLPSRELADQLYQVARKLRDAAGMHFSIAHLAGGTDRERQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   N   +V+ TPGRL D ++ K   +  +K  V+DEAD  LD+GF  DI+ +    
Sbjct: 117 LEKYQNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLSDIDQVASKM 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  ++  FSATI   ++   + Y     ++ I + +     I    + +   DR N + 
Sbjct: 177 PKDVQIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLIDIGSKDRKNVLY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+  V   TK L +   +V  + G ++++ER   L+ +  G+ +
Sbjct: 237 KVLTMGQPYLALVFANTKQKVDELTKFLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARG+D+  + LV++ E+  + E ++HR GRTGR G  G +V +I +    R 
Sbjct: 297 YVVASDLAARGLDIDGVSLVVNYEIPRDIEFVIHRIGRTGRNGLSGHAVTLIREEEMNRI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   V   +    + E +  + 
Sbjct: 357 EDLEK-MGVHFDFVEIKNGELVPRKH 381


>gi|330685975|gb|EGG97598.1| DEAD-box ATP-dependent RNA helicase CshB [Staphylococcus
           epidermidis VCU121]
          Length = 447

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 103/451 (22%), Positives = 209/451 (46%), Gaps = 20/451 (4%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +   + EA+ +  +   T +Q  I+   L+  +++  +QTG+GK+ +F L L + 
Sbjct: 6   FEHFGLNSSMIEAVKDLKFEKPTEIQNRIIPRILKGTNIIGQSQTGTGKSHSFLLPLVNQ 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVA-VCIGGVSVHRERRD 120
           +  +         P A+ +APTRELA Q+ +    L      V A + IGG  + ++R+ 
Sbjct: 66  IDTDIHE------PQAIVVAPTRELAQQLYQAANHLSGFKEGVNAKLFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +V+GTP R+ D  +   L+      +++DEAD M+DLG  +D++FI     +  
Sbjct: 120 CNQQPQLVIGTPTRINDLAKSGHLHTHLASYLIIDEADLMIDLGLIEDVDFIASRLEEHS 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y +    V + S+++   +I++  +    + +    + ++ 
Sbjct: 180 NIAVFSATIPKSLQPFLNKYLEQPDFVEVDSQSQNKKNIEFYLIPTKGTAKVEKTLKLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R S     + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDSADELARTLNEAGIKVGMIHGGLTPRERKQQMKRIRNLDFQFVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   +G+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYRGVAITLYSPDEEENVSAIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
                  NV +  +    ++A   R  ++   D L     + ++   K+ V     K   
Sbjct: 360 DRGYVFENVDIKNDELTPIKAHNTRRTRQRKDDHLTNEVKNKVRSKTKRKVKPGYKKKFK 419

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRD 444
           +++     R+ R       +         R 
Sbjct: 420 QEV----ERMKRQERKQFSKRQNRQNRKSRK 446


>gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 430

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 10/368 (2%)

Query: 14  ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
           AL+  G    T +Q+  + P L  +D++  AQTGSGKT+A+ L L        D      
Sbjct: 19  ALARAGLRTPTPIQQQAIPPMLDGRDLIAMAQTGSGKTLAYALPLLQQRCLAPDTAPRVL 78

Query: 74  APLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNGAHIVVGT 131
              AL + PTRELA QV   L  L A         V  GG S++ +   L+ GA IVV T
Sbjct: 79  G--ALVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSINPQLLALRGGADIVVAT 136

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL D +    L +S    +VLDEAD +L+LGF  +++ IL   P +R+ ++FSAT  P
Sbjct: 137 PGRLLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRILALLPAQRQTVLFSATFPP 196

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
           AI +LAK   +D +R+ I +   Q   I  RA+ V    R   + ++L  H     +VF 
Sbjct: 197 AIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDAGQRTQLLRHLLLEHAWPQLLVFV 256

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           ++R S  +  + L++     + L GELSQ  R   L+  +    +V +ATD+A RGID+ 
Sbjct: 257 ASRHSAEKVAEKLSKTGIAALPLHGELSQGRRERTLRAFKQADVQVLVATDLAGRGIDID 316

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV--- 368
            L  V++ +L  +  +  HR GRT RAG  G+++  +  +  ++   + +   + V    
Sbjct: 317 ALPAVLNYDLPRSTVDYTHRIGRTARAGASGVAISFVTADSAQQWRLIEKRQGLRVPTSV 376

Query: 369 ---WEPAP 373
              +EP P
Sbjct: 377 IEGFEPTP 384


>gi|156083913|ref|XP_001609440.1| eIF-4A-like DEAD family RNA helicase [Babesia bovis T2Bo]
 gi|154796691|gb|EDO05872.1| eIF-4A-like DEAD family RNA helicase, putative [Babesia bovis]
          Length = 472

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 178/387 (45%), Gaps = 22/387 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I  A+ + G+ + + VQ   +   +   D+L  A++G GKT  F L++   L  + 
Sbjct: 63  LKPEILRAIGDAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSVLQQLDVQE 122

Query: 67  DRF---------------SPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG- 110
           D                   A     L I+ TRELA Q+  E +        V    +  
Sbjct: 123 DGTLAGGVKRDAGGEAVAPSADRVACLGISHTRELAYQIKNEFDRFSKYMNGVRCEVVYG 182

Query: 111 ---GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFR 166
                      +D +   HI+VGTPGRL   I+GK LN+  ++  VLDE D+ L+    R
Sbjct: 183 GVPISRDIEMLKDPEKCPHILVGTPGRLLALIKGKHLNMDGIRHFVLDECDKCLEKLDMR 242

Query: 167 DDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVL 225
            D++ I  S+PKK++++ FSAT++  +  + K + +  V V +  E++     +    V 
Sbjct: 243 ADVQSIFMSTPKKKQVMFFSATMNNDVRDVCKRFVRSPVEVFVDDESKLTLHGLLQYYVK 302

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           ++ SD++  + ++L        I+F  + +       +L E  F  +A+   L Q ER  
Sbjct: 303 LSESDKNRKLNDLLDNLEFNQVIIFVKSVSRAQTLDNLLNECNFPSIAIHAGLDQDERIA 362

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
                ++   R+ ++TD+  RGID+  + +VI+ ++  + ++ LHR GR GR G KG+++
Sbjct: 363 RYTQFKNFDKRIMVSTDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKGLAI 422

Query: 346 FVI-PQNMQRRAERLFREANVSVVWEP 371
             +  +        + +   V +   P
Sbjct: 423 TFVATEADSTALADVQKRFEVDIPEMP 449


>gi|118358020|ref|XP_001012258.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|89294025|gb|EAR92013.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 744

 Score =  163 bits (413), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 190/431 (44%), Gaps = 21/431 (4%)

Query: 5   ENIPQVIGEA-----LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           +N+ + I  A     L++RG   L  +QE         KD++   +TGSGKT+ F L L 
Sbjct: 68  DNMSKYIKNAKTIEILNKRGITYLFPIQEHCFQAIQAGKDLIGKDRTGSGKTLGFSLPLI 127

Query: 60  STLLAEND--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV-CIGGVSVHR 116
             L  E +         P  L + PTREL +QV  E+  L         +   GGV V  
Sbjct: 128 EKLRNEGNFTSIKKKQTPYMLVVVPTRELCIQVANEINTLKHTDNEFRVLQIYGGVDVRE 187

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
           +   +++G  IVVGTPGR+ D      L    + A VLDEAD+ML+ GF++DIE I    
Sbjct: 188 QANQIRDGVEIVVGTPGRIIDQYERGALMFHSIIATVLDEADQMLNFGFQEDIEKIFGFI 247

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAV-----------RVNIASENRQHSDIDYRAVL 225
              +        +  A      +                 +      ++  + +      
Sbjct: 248 KNDKGEERPQNLLFSATMPSWVHDIARKFLREDRVLIDLVKNLGNKTSQDVTHLAINCPY 307

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
              ++    ++           I+FC T+   +             V   G++ Q++R  
Sbjct: 308 FQRTEAIGDVILCYGGGAHSRVIIFCETKNEANEIMLKANIKQDVQVLH-GDIPQKQREI 366

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
             Q  R+G+ +  +AT+VAARG+D+P+++L++  E     +  +HRSGRTGRAG+KG+ +
Sbjct: 367 TFQGFREGKFKCLVATNVAARGLDIPEVDLIVQLEPPKELDAYIHRSGRTGRAGKKGVCI 426

Query: 346 FVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD-SIQGDEKKMV 404
               +  Q   ER+ ++ ++ +    AP    +       I ++ + ++ ++ G  K++ 
Sbjct: 427 TFYTKKQQSLIERIEKKCHIKMQKVGAPQPADLIRASQNDIKKNLMSVNRTVLGIFKEVS 486

Query: 405 DVLLAKHDPEK 415
             L+ +  PE+
Sbjct: 487 VDLIQEFGPEE 497


>gi|114053201|ref|NP_001039695.1| ATP-dependent RNA helicase DDX19B [Bos taurus]
 gi|82571656|gb|AAI10250.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Bos taurus]
          Length = 484

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------RHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC +R + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNIYGAITIAQAMIFCHSRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|323357554|ref|YP_004223950.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273925|dbj|BAJ74070.1| superfamily II DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 515

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 131/415 (31%), Positives = 197/415 (47%), Gaps = 8/415 (1%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F ++  P  + + L+ +G      +Q   L   L  +DVL   +TGSGKT+AF L L 
Sbjct: 4   QTFADLGVPAPLIDVLAAQGKNEPFPIQADTLPDTLAGRDVLGRGKTGSGKTLAFSLPLV 63

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           + L A  DR      P AL +APTRELA Q+   ++ L    G+V     GGV+  R+  
Sbjct: 64  ARLAANTDR-RRGRKPRALVLAPTRELANQIDEVIKPLAQPFGLVTTTVYGGVNQKRQVD 122

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L  G  I+V  PGRL D I     N+  ++  VLDEAD M DLGF   +  +L  +P  
Sbjct: 123 ALNAGVDILVACPGRLEDLIGQGFANLGDIEITVLDEADHMADLGFLPGVTRLLARTPAD 182

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L K + ++ V  ++   +   + + +     A +D    +V  L
Sbjct: 183 GQRLLFSATLDNGVDKLVKRFLRNEVLHSVDEAHSHVAAMTHHVFAPADADAKKDLVQTL 242

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
               A+  + F  T+    +  K L       V L G LSQ  R   L    DGRA+V +
Sbjct: 243 ASGTARRIL-FMRTKHQAKKLAKQLTASGIPAVDLHGNLSQPARDRNLAAFGDGRAKVLV 301

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATDVAARG+ +  +ELV+H +     +  LHRSGRT RAG  G  V ++    +R    +
Sbjct: 302 ATDVAARGVHVDGVELVVHVDPPVEHKAYLHRSGRTARAGSAGDVVTIMLPEQRRDTLDI 361

Query: 360 FREANVSVVWEPA----PSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAK 410
            R+A +S    P     P V A+    A  +  +P+      G   +  +    +
Sbjct: 362 LRKAKISATPTPVTSTSPEVVALVGEVAPYVKPEPIVAQPQGGGRSQGANAQRKR 416


>gi|315297174|gb|EFU56454.1| DEAD/DEAH box helicase [Escherichia coli MS 16-3]
          Length = 432

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 132/399 (33%), Positives = 197/399 (49%), Gaps = 21/399 (5%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +TSVQ A L   L  KDV V A+TGSGKT AFGL L   +               L + P
Sbjct: 1   MTSVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDVS------LFQTQGLVLCP 54

Query: 83  TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L    +   +    GG     +R  LQ+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLSNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVICFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQSVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E     ++L G+L Q++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 293

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 294 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVP- 352

Query: 382 DAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
                L+  +    I G +K       AK  P  +    
Sbjct: 353 -----LEAEMATLCIDGGKK-------AKMRPRDVLGAL 379



 Score = 53.8 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 295 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLE 354

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K   R ++  L    G++   IG I V P   +V V         +
Sbjct: 355 AEMATLCIDGGKKAKMRPRDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 414

Query: 524 TVKLDK 529
            ++  K
Sbjct: 415 QLQGGK 420


>gi|119480453|ref|XP_001260255.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
 gi|134034069|sp|A1DG51|DBP3_NEOFI RecName: Full=ATP-dependent RNA helicase dbp3
 gi|119408409|gb|EAW18358.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
          Length = 503

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 189/396 (47%), Gaps = 19/396 (4%)

Query: 3   IFENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++P     I + LS   + + T +Q A        +DV+  A+TGSGKT+AFGL   
Sbjct: 87  SFSHLPSSFSKIYDPLSS--FSSPTPIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCI 144

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +L         + P A+ I+PTRELA+Q+  +L    A   +    CI G     E+R
Sbjct: 145 KKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSKFGASVDIR-VTCIYGGVKKDEQR 203

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    A IVV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+ S P  
Sbjct: 204 EALKTAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRSMPDS 263

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           +R  +      P            +        + +++ R ++ I     +V   +++  
Sbjct: 264 KRQTVMFTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQVVEVVKPQEKEAR 323

Query: 235 IVNILRYHGAKNAIV-----FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +V +L       A+      FC  +    R  ++L    F+V  + G+L+Q ER  +L+ 
Sbjct: 324 LVQLLNRSQRGAAVCDKVLVFCLYKKEAVRVERLLRTKNFKVAGIHGDLNQHERFKSLEA 383

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G A V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG  G ++ +  
Sbjct: 384 FKTGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLFT 443

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRERD 382
           +  + ++  L    R A   V          ++++ 
Sbjct: 444 ETDKAQSGALINVLRAAKQDVPDALLKFGTTVKKKQ 479


>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
 gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 684

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 177/361 (49%), Gaps = 9/361 (2%)

Query: 17  ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
           ++GY   T +Q   +   LR  D++  A+TGSGKT A+ + + + L   +          
Sbjct: 30  KKGYRVPTPIQRKAIPAILRGNDIIAMARTGSGKTAAYLVPIINRLETHSTE-----GVR 84

Query: 77  ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
           +L I PTRELA+Q  +    L   T +  ++ IGG  +  +  +L +G  I+V TPGRL 
Sbjct: 85  SLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGPDIIVATPGRLT 144

Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
             + G  ++++ ++ V  DEAD M + GF + +  I+   P  R++L+FSAT+   +   
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTRQILLFSATLPRNLAEF 204

Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK--NAIVFCSTR 254
            KN  K    + + +E R   D+D     V   +++  ++ +L          +VFC+TR
Sbjct: 205 LKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKEGHLLYLLLDLIGDKEQTVVFCATR 264

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
             V    ++L     +   + G+  QQER   L+  R     V + TDVAARG+D+P+L+
Sbjct: 265 HEVEYLNEILKIFDIKTSIMFGKADQQEREINLKKFRKQETHVLLVTDVAARGVDIPELD 324

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL--FREANVSVVWEPA 372
            VI+ +  + P+  +HR GR  RAGR G     +  +       L  F   N  + +   
Sbjct: 325 NVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQTDEVGYLMDLQVFALENKEIEFGVI 384

Query: 373 P 373
           P
Sbjct: 385 P 385


>gi|264677044|ref|YP_003276950.1| hypothetical protein CtCNB1_0908 [Comamonas testosteroni CNB-2]
 gi|262207556|gb|ACY31654.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
          Length = 690

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 124/418 (29%), Positives = 189/418 (45%), Gaps = 48/418 (11%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREK-------DVLVSAQTGSGKTVAFGLALA 59
           +   + +A+++ GY   T+VQ   +   + E        D++VS+QTGSGKT AF L + 
Sbjct: 48  LAPELIQAVTDLGYTQPTAVQLQAIPLAMGEGADADGFIDLMVSSQTGSGKTAAFLLPVL 107

Query: 60  STLLAE-----------------------------NDRFSPASA-------PLALAIAPT 83
            TL+ +                             N R  P +A       P AL + PT
Sbjct: 108 HTLIKQRAVADAAAKAEFERLCAEAAAKGEPAPKRNKRKDPTNARNFKAAVPGALVLCPT 167

Query: 84  RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
           RELA QV  +   L      +    + G   ++ +      A +VV TPGRL D  R   
Sbjct: 168 RELAQQVAHDAIELVKHCRGIRIANVVGGIPYQLQIAKLQNADLVVATPGRLLDLQRSMQ 227

Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKD 203
           + +  ++ +V+DEAD MLDLGF DD+  +   + ++++ +MFSAT +P I  LA     D
Sbjct: 228 IKLDKVQFLVVDEADRMLDLGFSDDLAEVNQLTAERKQTMMFSATFAPRIQQLAMRVMHD 287

Query: 204 -----AVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                        + +  +          +  +   + + LR      AIVF ST+    
Sbjct: 288 GGANVKKITIATPQEKHANIKQALFWADNMQHKRKLLDHWLRDSSINQAIVFASTQVECD 347

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
                L +  F  VAL G LSQ  R+  L  +R+G+ ++ +ATDVAARGID+P +  V +
Sbjct: 348 GLANDLQQDGFSAVALHGALSQGLRNRRLMALRNGQVQILVATDVAARGIDVPTITHVFN 407

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
             L    E+  HR GRTGRAGR+G++V       +RR   +          E  P +E
Sbjct: 408 YGLPMKAEDYTHRIGRTGRAGREGVAVTFAEFRDRRRVFDIEGYTRQQFKAETIPGME 465


>gi|227524339|ref|ZP_03954388.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088570|gb|EEI23882.1| ATP-dependent RNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 453

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 29/476 (6%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F   ++   I  AL +  +   T VQE ++   L+ +DV+  + TGSGKT AF L +
Sbjct: 1   MTQFSEFHLKPFILNALDDLKFTKPTPVQEKLIPVILQHRDVVGQSATGSGKTHAFLLPI 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVH 115
            + +  + D         A+   P+RELA Q+    + L   +   +++     G     
Sbjct: 61  FNDIDRKIDEV------QAVITTPSRELAYQILDAAKQLAKFSPDPISIGSYVGGTDKKR 114

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +E +  +    ++VGTPGR+ D I+  GL++     +V+DEAD  LD+GF D ++ I  S
Sbjct: 115 QEDKLKKEQPQLIVGTPGRVWDLIKNGGLDVHTASKLVIDEADMTLDMGFLDVVDHIAAS 174

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             K  +M++FSATI   IT   K Y  + V   I   +     ID   +     D++  I
Sbjct: 175 FGKHVQMMVFSATIPQKITVFLKKYMDNPVIEEIPVSSIISPTIDNWLISTKGQDKNQLI 234

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            ++L        ++F +TR  V   T+ L     +V  + G +  +ER   ++ +++   
Sbjct: 235 YHLLTIGEPYLVLIFANTRKRVEELTEYLRGQGLKVAMVHGGVKPRERKQIMKRIKNLDF 294

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSS-NPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           +  +ATD+AARGID+  +  VI+ ++ + + E  +HR GRTGR G  G S+ +   + ++
Sbjct: 295 QFVVATDLAARGIDIEGVSQVINDDIPTEDLEFFIHRVGRTGRNGMSGTSITLYSPDEEK 354

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
             E       + + ++P             + L++   +D+     ++       K DP 
Sbjct: 355 EVEE---LEGMGIHFKP-------------KALKNHEIVDTYDRRRRQTHRKKREKLDPT 398

Query: 415 KIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFS 470
            I     +  +       +I  +S+    +  R  S+  +     +   + S  + 
Sbjct: 399 MIGLIKKKKKKIKPGYKRQIK-MSISRKEEMDRRVSKREESRAKRKQRKQSSKRYK 453


>gi|71027139|ref|XP_763213.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
 gi|68350166|gb|EAN30930.1| ATP-dependent RNA helicase, putative [Theileria parva]
          Length = 839

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 98/357 (27%), Positives = 175/357 (49%), Gaps = 8/357 (2%)

Query: 16  SERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
               Y   +++Q   +   L   DVL  A+TGSGKTVA+   +   L       SP    
Sbjct: 26  KRLRYDQPSAIQRKTIPHILAGSDVLCIARTGSGKTVAYIAPIVQLLDFH----SPVVGV 81

Query: 76  LALAIAPTRELAVQVGRELEWLYAKTGV----VVAVCIGGVSVHRERRDLQNGAHIVVGT 131
             L + PTRELA+QV   L+     +       V++ IGG SV  +   L     IV+ T
Sbjct: 82  RCLILLPTRELALQVEGVLKKFVNFSNQDDALRVSLLIGGKSVESQFGSLSFNPDIVIAT 141

Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
           PGRL  H+  K L +S L  +V+DEAD++ ++GF  D+  +    PK +++++ SAT+  
Sbjct: 142 PGRLVYHLEQKSLTLSLLTHLVIDEADKLFEMGFLPDVYKVFAYLPKIKQVILVSATLPT 201

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
            ++        + V   +  +   +  +    +     ++ + ++ +L  H     IVF 
Sbjct: 202 QLSEFVSFGLNEPVLAKLDQDQHINEQLQMSFIFSRNEEKISVLLRLLAKHKDLKTIVFV 261

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TR  V  F  +L +  + +  + G +    R   +   R  + R+ + TDVA+RG+D+P
Sbjct: 262 ATRHHVEFFRTLLLKLGYSISCVYGTMDMDNRVIEMSRFRSNKTRILLVTDVASRGLDIP 321

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
            ++LVI+ +   + +  +HR GRT RAGR+G++V ++         ++  + N +++
Sbjct: 322 LVDLVINFDFPYSTKLFIHRVGRTARAGRQGLAVSIVTNKDFSFLLQILYKLNKTLL 378


>gi|312889170|ref|ZP_07748727.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
 gi|311298332|gb|EFQ75444.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
           18603]
          Length = 404

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 114/372 (30%), Positives = 187/372 (50%), Gaps = 9/372 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N  + + E +   GY   T +Q   +   L   D++  AQTG+GKT A+ L +   +   
Sbjct: 7   NFNEPLFEGIQSMGYTTPTPIQGMAIPIILEGHDLIACAQTGTGKTAAYLLPVLDHI--- 63

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQ 122
           + +  P    L L  APTRELA Q+ ++++ L   TGV          G    ++R+ +Q
Sbjct: 64  SRKTKPKINTLIL--APTRELAQQIDQQIQGLAYFTGVTSVAIFGGGDGSVYEQQRKAIQ 121

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           + A+I++ TPGR   H+    L +  L+ ++LDEAD MLD+GF DDI  I+   PKKR+ 
Sbjct: 122 HHANILIATPGRFLAHLASGVLKLDDLQHLILDEADRMLDMGFMDDIMRIISFLPKKRQT 181

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   I  LA +   +  ++NIA              +   + +      +L+  
Sbjct: 182 LLFSATMPGRIRKLAGSILNNPQQINIALSQPAVGIDQQIYKVY-DNQKTALTEMLLKDA 240

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
              + I+F ST+  V    KVL +   +V A   +L Q ER   L   ++ + +V I TD
Sbjct: 241 AYTSVIIFASTKEKVKEVYKVLGKLKVKVEAFHSDLKQAEREEILLQFKNRKLQVLIGTD 300

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V +RGID+  ++LVI+ ++  +PE+ +HR GRT RA   G ++  + +  QR+   +   
Sbjct: 301 VLSRGIDVEGIDLVINYDVPGDPEDYIHRIGRTARAATTGTAITFVNERDQRKLINIESL 360

Query: 363 ANVSVVWEPAPS 374
               +     P+
Sbjct: 361 IGREIKVSELPA 372


>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Meleagris gallopavo]
          Length = 831

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 162/355 (45%), Gaps = 7/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   LR +DV+  A+TGSGKT  F L +   L    
Sbjct: 67  LSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFERL---- 122

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    S   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 123 -KAPSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENPD 181

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ IL   P   + ++FS
Sbjct: 182 IIIATPGRLVHVAVEMNLKLHSMEYVVFDEADRLFEMGFAEQLQEILARLPGSHQTVLFS 241

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + + + +  E++    +      V   D+      +        
Sbjct: 242 ATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRSVVKPQ 301

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+       ++L         +   L Q  R   +     G+ +V + TDVA
Sbjct: 302 DQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLVTDVA 361

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L
Sbjct: 362 ARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFDL 416


>gi|328469481|gb|EGF40427.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
          Length = 412

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 122/411 (29%), Positives = 194/411 (47%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLSVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA+QV   +  +     +      GGV   ++++ L    
Sbjct: 66  PEQ-------KALILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I      +R+  MF
Sbjct: 119 HILVATTGRLVDLANNGL-DLSNVHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK   +   +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIVETLYLVNKGSKTKALIELIQKNAWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF   + +     K L +      AL G  SQ ER +AL   + G+ +V IATD+ A
Sbjct: 238 QALVFIGAKENADGLAKKLNKAGISANALHGNKSQDEREDALAQFKSGQMQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR---RAERLFRE 362
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++             L + 
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALSAIRHLTQR 357

Query: 363 A-------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           A          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ALPVQDLVGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPA 408


>gi|299782998|gb|ADJ40996.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
          Length = 395

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/390 (27%), Positives = 185/390 (47%), Gaps = 12/390 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++     +  AL +  +   T+VQ  ++   L  K V+  ++TGSGKT AF L +
Sbjct: 2   IESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLPI 61

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGR---ELEWLYAKTGVVVAVCIGGVSVH 115
            S L   N          A+   P+RELA Q+     +L         +     G    H
Sbjct: 62  FSQLAPNNQTV------QAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEH 115

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +  +    +V+GTPGR+ D I  + L+I      V+DEAD  LD+GF + ++ I   
Sbjct: 116 QVEQLNRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAAR 175

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            P+K +M++FSATI   +    K Y ++ V   I +E   + +++   +     D+++ +
Sbjct: 176 FPEKLQMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLV 235

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +L       A+VF +TR   +     L E   +V  + G L  + R   ++ +RD   
Sbjct: 236 YRLLTLGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDY 295

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           +  +ATD+AARGIDL  + LV++ ++ S+ E  +HR GRTGRA   G ++ +        
Sbjct: 296 QYIVATDLAARGIDLEGVSLVLNDDIPSDLEYFIHRVGRTGRANMAGTAITLYAPAEDVL 355

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQR 385
             +L  E  ++ + +   +   +   D  R
Sbjct: 356 IXKLE-ERGITFIPKDLKNGRIVTTYDRNR 384


>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
           DDX54-like [Pongo abelii]
          Length = 883

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 117/541 (21%), Positives = 212/541 (39%), Gaps = 53/541 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNVVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLEEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD----NFKGSSWFSLSVGS 475
           LR + R    A ++          +  +       VG G       +F+      L    
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDFVGLGLHPLFSSHFEEEELQRL---- 560

Query: 476 KQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY 535
                   L+  +                +   T  E++A   DL R+ ++  +   LK 
Sbjct: 561 -------RLVDSIKSY-------------RSRATIFEINASSRDLCRQVMRAKRQRDLKA 600

Query: 536 L 536
           +
Sbjct: 601 I 601


>gi|241950191|ref|XP_002417818.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
 gi|223641156|emb|CAX45533.1| ATP-dependent DEAD-box RNA helicase, putative [Candida dubliniensis
           CD36]
          Length = 563

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 169/366 (46%), Gaps = 7/366 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +I + +   L E  ++  T++Q   +   L  +D++  A TGSGKT+AF + L   +L++
Sbjct: 131 HINKKVLSNLIENEFIEPTTIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSK 190

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               S       L I+PT ELAVQ+ +ELE +      +    +      +   ++   +
Sbjct: 191 T--VSKNYGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSS 248

Query: 126 --HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRM 182
              I+V TP RL D ++   +++S ++ +++DEAD++ D GF +   E +      K R 
Sbjct: 249 KYDIIVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCINPKIRK 308

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
            +FSATI  ++  +A +  KD +R+ I  +    + ID + V           +  +   
Sbjct: 309 SIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQMIQQ 368

Query: 243 --GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +          L      V  +  E + ++R   ++  ++G   V I 
Sbjct: 369 GEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLIT 428

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TDV ARG+D   + LVI+ ++  + +  +HR GRTGR G+ G +V    +   +  + + 
Sbjct: 429 TDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKSGKAVTFFTKEDDKAIKPIL 488

Query: 361 REANVS 366
                S
Sbjct: 489 NVMKQS 494


>gi|156087495|ref|XP_001611154.1| p68 RNA helicase protein [Babesia bovis T2Bo]
 gi|154798408|gb|EDO07586.1| p68 RNA helicase protein, putative [Babesia bovis]
          Length = 568

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 170/384 (44%), Gaps = 13/384 (3%)

Query: 1   MKIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F+     + I   +   G++  T +Q+      L  +DV+  +QTGSGKT+AF    
Sbjct: 182 VNTFDEAVFNEAIQRIIKNMGFIEPTPIQKVGWTSCLTGRDVVGVSQTGSGKTLAFL-LP 240

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
               L      +P + P+ L +APTREL  Q   E +       +  A+  GGVS ++++
Sbjct: 241 GLLHLLAQPPVTPGNGPVILILAPTRELCQQTYEETKKFMRVMNLRGAILYGGVSKYQQQ 300

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
           + L  G  I+V TPGRL D +    L +  +   VLDEAD MLD+GF   I  I      
Sbjct: 301 QQLTGGVDIMVATPGRLLDCLSSGLLRLDRVSYFVLDEADRMLDMGFEPQIRMIASQIRP 360

Query: 179 KRRMLMFSATISPAITT---LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            R+ L+FSAT   +I              ++V         +      VL +        
Sbjct: 361 DRQTLLFSATWPASIRRLASEFCKTNCIYIQVGDKELTANPNITQTVKVLRSDETFPFLC 420

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
             +      K  ++F  +R       + LA      +++ G  SQ +R + +   R G  
Sbjct: 421 NFLTTEAYNKKILIFVESRIGADTLVRDLARRGLNALSIHGNKSQSQRDHTVSQFRSGAV 480

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-----PQ 350
            + +ATDVA+RG+D+ +++ V++ ++    E+ +HR GRT R   KG S+ +        
Sbjct: 481 NIMVATDVASRGLDIKNIDYVVNMDVPRTIEDYIHRIGRTARGNMKGNSLLLFVNDYPDP 540

Query: 351 NMQRRAERLFREANVSVVWEPAPS 374
              R A+RL        V +P P 
Sbjct: 541 RKARFAQRLIEVLKT--VRQPVPE 562


>gi|26337015|dbj|BAC32191.1| unnamed protein product [Mus musculus]
          Length = 462

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 111/401 (27%), Positives = 186/401 (46%), Gaps = 13/401 (3%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 425

Query: 354 RRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLD 394
              ++L ++  V V        + I   D Q+ L+  L  D
Sbjct: 426 GMVQQLLQK-KVPVKEIKINPEKLI---DVQKKLESFLAQD 462


>gi|192447401|ref|NP_001122187.1| ATP-dependent RNA helicase DDX19A [Danio rerio]
 gi|190337852|gb|AAI62175.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
 gi|190338805|gb|AAI62171.1| Similar to ATP-dependent RNA helicase DDX19B (DEAD box protein 19B)
           (DEAD box RNA helicase DEAD5) [Danio rerio]
          Length = 471

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 161/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + + E G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 83  VKTFEELRLKPQLLKGVYEMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 142

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVH 115
           A+ S +               L I+PT ELA+Q G+ +E +      V  A  + G  + 
Sbjct: 143 AMLSHVDPACKWS------QCLCISPTYELALQTGKVIEQMGKFYPEVTLAYAVRGHRME 196

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R  R          GT    C  ++        +  +   +            I      
Sbjct: 197 RGVRIKDQIVIGTPGTVLDWCIKLKLIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 256

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   Y  +  +  D+ NA+
Sbjct: 257 PKGCQMLLFSATFEDSVWKFAERVVPDPNIIKLKREEETLDTIKQYYVLCNSKEDKFNAL 316

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR   +     +++   QV  LSGE+  ++R+  ++  RDG+ 
Sbjct: 317 CNIYGAITIAQAMIFCHTRKMANWLAGQMSKEGHQVALLSGEMVVEQRAAVIERFRDGKE 376

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V I T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++ 
Sbjct: 377 KVLITTNVCARGIDVEQVSVVINFDLPLDKDSNPDNETYLHRIGRTGRFGKRGLAINMVD 436

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            Q      +   R  +  +       ++ I +
Sbjct: 437 SQRSMEILKTYERHFDKKIARLDTDDLDEIEK 468


>gi|109129173|ref|XP_001107762.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 5 [Macaca
           mulatta]
          Length = 484

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|109129181|ref|XP_001107827.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 6 [Macaca
           mulatta]
          Length = 440

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 52  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 111

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 112 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 165

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 166 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 225

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 226 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 285

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 286 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 345

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 346 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 405

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 406 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 437


>gi|109129171|ref|XP_001107893.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 7 [Macaca
           mulatta]
          Length = 479

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|68072041|ref|XP_677934.1| RNA helicase [Plasmodium berghei strain ANKA]
 gi|56498231|emb|CAH99198.1| RNA helicase, putative [Plasmodium berghei]
          Length = 855

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 110/397 (27%), Positives = 186/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAENDRFS--- 70
           + +  Y   T +Q+  L+  + + D++  AQTGSGKT  + L + +  LL +  + +   
Sbjct: 284 IKKVHYDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYE 343

Query: 71  -----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                          P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 344 DNNKNSNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLS 403

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++     
Sbjct: 404 NLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMP 463

Query: 180 ------------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                   R+ +MFSAT    I  LAK+Y  +   + +      
Sbjct: 464 GNDNDSYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGST 523

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V     ++ + ++ +L  +     I+F  T+       + L       V + 
Sbjct: 524 NEYIKQNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIH 583

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 584 GDKSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 643

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   +  + +   + L     E N  +  
Sbjct: 644 GRAGNIGIATSFVNDDNKNIFKDLLATLEECNQEIPR 680


>gi|325126224|gb|ADY85554.1| RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 453

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 111/357 (31%), Positives = 177/357 (49%), Gaps = 9/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L++ G+   T VQE ++   L+ + V+  A TGSGKT A+ + + + +  + 
Sbjct: 10  LRSEIRQGLAKIGFTKPTPVQEKVIPAMLKGESVIAQAATGSGKTHAYLIPILNAIDED- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQN 123
                A    A+  AP+RELA Q+ R    L   +G+ +A+     G     +  R  QN
Sbjct: 69  -----ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQN 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M 
Sbjct: 124 KPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMS 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI   +T   + Y      + I +       I    + +   DR   +  +L    
Sbjct: 184 AFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQ 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+
Sbjct: 244 PYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDL 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           AARGIDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++ +    R   L 
Sbjct: 304 AARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGALE 360


>gi|242784404|ref|XP_002480380.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218720527|gb|EED19946.1| ATP dependent RNA helicase (Dbp8), putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 538

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 98/390 (25%), Positives = 171/390 (43%), Gaps = 26/390 (6%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             F N+     + ++LS       T++Q++ +   L+ KD +  ++TGSGKT+AF + + 
Sbjct: 108 STFANLNVAPWLVKSLSTMAIRRPTAIQKSCIPEILQGKDCIGGSRTGSGKTIAFAVPIL 167

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                +           A+ + PTRELA+Q+  + + + A   +   +  GG  +  +  
Sbjct: 168 QKWAEDP------FGIFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAI 221

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDS 175
            L    H+++ TPGRL DHIR  G +     + ++ +V+DEAD +L  G    +  +   
Sbjct: 222 ALSQRPHVIIATPGRLADHIRTSGEDTIVGLNRVRMIVMDEADRLLTSGHGSMLPDVETC 281

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
                        +  A  T      K   R                   +  + +   +
Sbjct: 282 LSALPPSSERQTLLFTATVTPEVRALKSVPRPANRPPIHVTEIGTENIAPIPPTLKQTYL 341

Query: 236 VNILRYHGA-------------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
              + +  A             K AI+FC+   +     ++L     +V +L   L Q E
Sbjct: 342 QVPMTHREAFLHVLLSTEGNSSKPAIIFCNRTKTADLLERMLRRLSHRVTSLHSLLPQSE 401

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R+  L   R   AR+ +ATDVA+RG+D+P++ LVI+ ++  NP++ +HR GRT RAGR G
Sbjct: 402 RTANLSRFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTG 461

Query: 343 MSVFVIPQNMQRRAERLFREAN-VSVVWEP 371
            SV ++ Q   +    + +      V WE 
Sbjct: 462 ESVTLVGQRDVQLVLAIEKRVGRQMVQWEE 491


>gi|126305160|ref|XP_001375615.1| PREDICTED: similar to histone protein Hist2h3c1 [Monodelphis
           domestica]
          Length = 694

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 163/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 306 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 365

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 366 AMLSQVEPLN------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 419

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 420 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 479

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 480 PKDCQMLLFSATFEDSVWKFARKVVPDPNIIKLKREEETLDTIKQYYVMCNNRDEKFQAL 539

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR +       L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 540 CNLYGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 599

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 600 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 659

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 660 SKHSMNILNRIQEHFNKKIDRLDTDDLDEIEK 691


>gi|162605914|ref|XP_001713472.1| RNA helicase [Guillardia theta]
 gi|6690145|gb|AAF24010.1|AF083031_7 RNA helicase [Guillardia theta]
          Length = 381

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 152/348 (43%), Gaps = 10/348 (2%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           Y + + +QE I+   +  KD+L  ++ G+GKT++F + +   +      +S +    ++ 
Sbjct: 35  YEHPSLIQEKIIPLAINNKDILARSKNGTGKTLSFLIPILQNI------YSESYGIESII 88

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTRELA+Q+   L  L      +           +  ++  +   ++           
Sbjct: 89  LVPTRELALQISSLLRKLSKYMKNIN--LQVTGVDSKIDKNNIDFNILLGTPGKIYDCLC 146

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           + +         +   +   +    +   ++ +     K  ++++FSAT    I  + K 
Sbjct: 147 KNEVNKTCKTLVLDEADKL-LSGEVYDTTLKILNHYKNKISQIMLFSATFPYHIQNIKKM 205

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
           Y  + + VN+         I       + + +   I NIL       ++ FC++   V  
Sbjct: 206 YMNNPIEVNLM-NELVLEKISQFYAYTSENKKIQCIKNILSKVNINQSVFFCNSVNRVEL 264

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
             K + +  +    +  ++    R+      R G++++ +++D+  RGID+P++ LV++ 
Sbjct: 265 LAKKITDFGYPCYFIHAKMRLDIRNKIFHDFRIGKSKLLVSSDLITRGIDIPNINLVVNF 324

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSV 367
           +L  + E+ LHR GRTGR G+ G+++ +I ++      R+  E  + +
Sbjct: 325 DLPLSSESYLHRIGRTGRFGKHGIAISLITEDELETFFRIENELGIEI 372


>gi|262164692|ref|ZP_06032430.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
 gi|262027072|gb|EEY45739.1| ATP-dependent RNA helicase [Vibrio mimicus VM223]
          Length = 430

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 123/410 (30%), Positives = 195/410 (47%), Gaps = 21/410 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL +      T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L    
Sbjct: 26  LSADLIQALPKE-ITQPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERLKTSP 84

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+QV   L  +    G+      GGV    ++  L    +
Sbjct: 85  EQ-------QALVLVPTRELAMQVSEVLTHVGTPLGLNTLCLCGGVDKAEQQNALAENPN 137

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V T GRL D  +    +++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M S
Sbjct: 138 ILVATTGRLFDLTQSGL-SLNRVTTLVLDEADRLLDMGFWPQVQALASQTASVRQTVMCS 196

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +   A+       +V+   EN  +  +     LV    +  A+V +L+ H    
Sbjct: 197 ATFSDDLKLKAQQLMHAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQ 256

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD+ AR
Sbjct: 257 VLVFIGAKENADSLTKKLNKAGVVATALHGDKSQTEREAALAEFKNGSTQVLIATDLLAR 316

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FRE 362
           GI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++          +     RE
Sbjct: 317 GIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAIRTLTQRE 376

Query: 363 A------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
                     V  +P+   S  A R++ A R  Q+   +   QG  K  V
Sbjct: 377 LPVQNLEGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQGKSKPSV 426


>gi|148667738|gb|EDL00155.1| mCG1035528 [Mus musculus]
          Length = 406

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKIFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|268568714|ref|XP_002640327.1| C. briggsae CBR-GLH-1 protein [Caenorhabditis briggsae]
          Length = 795

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 165/371 (44%), Gaps = 23/371 (6%)

Query: 3   IFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            FE+  + + + + +   GY   T +Q+  L       D++  AQTGSGKT AF L + S
Sbjct: 375 TFEDAKLTETMLKNVRNAGYNKTTPIQQFALPLIRDGHDIMACAQTGSGKTAAFLLPIMS 434

Query: 61  TLLAENDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
            L  E+D  +       P  + + PTRELA Q+  E      +T + +    GG++V   
Sbjct: 435 RLTDESDLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYN 494

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFR-DDIEFILDSS 176
           +  ++ GA IVVGT GR+        + +   +  VLDEAD M+D     DDI  I+   
Sbjct: 495 KSQIERGATIVVGTVGRIKHFCEEGTIKLDKCRYFVLDEADRMIDAMGFGDDIRTIVGYE 554

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ-----HSDIDYRAVLVALSDR 231
              ++    +   S       +   ++ +R + +          +  +        + D+
Sbjct: 555 GMPQKENRQTLMFSATFPDSVQEAAREFLRQDYSMITIDKIGAANKCVLQEFEQCEMCDK 614

Query: 232 DNAIVNI------------LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
            + ++ +                  K  IVF + RA       VL+      + + G   
Sbjct: 615 KDKLLEMLGVDLESYTTVTNADVYTKKTIVFVARRALADTLAAVLSTAQIPAITIHGARE 674

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q+ERS AL+  R+G   V IAT VA RG+D+  ++ VI+ ++  N ++ +HR GRTGR G
Sbjct: 675 QRERSEALRHFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVG 734

Query: 340 RKGMSVFVIPQ 350
             G +   I +
Sbjct: 735 NSGRATSFIEE 745


>gi|317106728|dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
          Length = 455

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVA 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL--QNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D+     
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L + +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +    +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +V++ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQA 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
           mulatta]
          Length = 883

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 118/537 (21%), Positives = 213/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNVVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSALIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVVPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L+DP     + G   ++   ++ + D      + A   
Sbjct: 459 RSLA--------------LARPLEDPSGAAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDHKAI 601


>gi|68536703|ref|YP_251408.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
 gi|68264302|emb|CAI37790.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
          Length = 453

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 183/391 (46%), Gaps = 22/391 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I EAL+     +  ++QE  L   L+  DV+  A+TG GKT+ FG+ +  
Sbjct: 18  TFSSLGVAAEITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLD 77

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +    +P   P AL + PTREL +QV  +L        V V           + R 
Sbjct: 78  RVFDDATVTAPDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRA 137

Query: 121 LQNG------------------AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           LQ                      +VVGTPGRL D  +   L ++ ++ VVLDEADEMLD
Sbjct: 138 LQVHAVYGGVSFDKQTTALARGVDVVVGTPGRLLDLAQQGYLQLNTVEIVVLDEADEMLD 197

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAIT--TLAKNYQKDAVRVNIASENRQHSDID 220
            GF DD+  I+  +  +R+ ++FSAT+   I   T         ++ + A+    H    
Sbjct: 198 QGFLDDVRSIITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADNAATEATHESTK 257

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                    DR +A+  IL+  G    IVF  T+   +   + LA+  F+V A+ G++ Q
Sbjct: 258 QVVFQSHKLDRLSALARILQSPGRGRCIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQ 317

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R  +L   R     V +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG 
Sbjct: 318 NDREESLDEFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGN 377

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            G +V +I  +   R   +     + +   P
Sbjct: 378 TGTAVSLIGWDEVARWNAISDALGLGLQDPP 408


>gi|169769538|ref|XP_001819239.1| ATP-dependent RNA helicase dbp3 [Aspergillus oryzae RIB40]
 gi|91206543|sp|Q2UMH8|DBP3_ASPOR RecName: Full=ATP-dependent RNA helicase dbp3
 gi|83767097|dbj|BAE57237.1| unnamed protein product [Aspergillus oryzae]
          Length = 498

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 117/396 (29%), Positives = 190/396 (47%), Gaps = 19/396 (4%)

Query: 3   IFENIPQ---VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            F ++P     +   LS   + + TS+Q A        +DV+  A+TGSGKT+AFGL   
Sbjct: 82  SFSHLPPCKDDLYAPLSS--FKSPTSIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCL 139

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             +            PLA+ I+PTRELA+Q+  +L       GV VA   GGV    E+R
Sbjct: 140 KKIQDSAMTKQKPYRPLAVIISPTRELAMQIYDQLLKFSGSVGVRVACVFGGV-RKEEQR 198

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +    A +VV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+   P  
Sbjct: 199 EALKTAGVVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMPVS 258

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRDNA 234
           +R  +      P       +    +        + +++ R ++ I     +V   ++++ 
Sbjct: 259 KRQTIMFTATWPPSVRDLASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKESR 318

Query: 235 IVN-----ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
           +V             +  + FC  +    R  ++L    F+V  + G+LSQQER  +L  
Sbjct: 319 LVQLLNRSQRGVPEPEKVLAFCLYKKEAMRIERLLRTKGFKVAGIHGDLSQQERFRSLDA 378

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            + G A V +ATDVAARG+D+P ++ VI+       E+ +HR GRTGRAG +G +V +  
Sbjct: 379 FKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFT 438

Query: 350 QNMQRRAERL---FREANVSVVWEPAPSVEAIRERD 382
           +  + ++  L    R A   +  +       ++++ 
Sbjct: 439 ETDKAQSGALINVLRAAKQDIPEDLLKFGTTVKKKQ 474


>gi|84621697|ref|YP_449069.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84365637|dbj|BAE66795.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 429

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 126/383 (32%), Positives = 200/383 (52%), Gaps = 8/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P +   AL+  G   LT +Q A++ P L  +D++V+AQTGSGKT+A+ L L    L   
Sbjct: 12  LPPLFESALARAGVRTLTPIQVAMIPPMLAARDLIVTAQTGSGKTLAYALPLLQQRLQAP 71

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV--VAVCIGGVSVHRERRDLQNG 124
           ++         L + PTREL  QV + L  L A       +    GG +++ +   L+ G
Sbjct: 72  EQVPRVLG--GLILVPTRELVAQVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGG 129

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
           A IV+ TPGRL D +    L +S ++ +VLDEAD +LDLGF  +I+ IL   P +R+ ++
Sbjct: 130 ADIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAEIDRILALLPAQRQSVL 189

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA 244
            SAT  PAI +LAK   +D +R+ I +       I  RA+ V    R   + ++L+ H  
Sbjct: 190 VSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQRAIAVDAGQRTQLLRHLLQEHAW 249

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF ++R +  +  + L++   + + L GELSQ  R   L+  +    +V +ATD+A
Sbjct: 250 PQLLVFVASRHTADKVAEKLSKTGIEALPLHGELSQGRRERTLRAFKQADVQVLVATDLA 309

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  L  V++ +L  +  +  HR GRT RAG  G ++  +     ++   + +   
Sbjct: 310 ARGIDIDALPAVLNYDLPRSTVDYTHRIGRTARAGASGEAISFVTAERAQQWRLIEKRQG 369

Query: 365 ----VSVVWEPAPSVEAIRERDA 383
                SV+    PS      RDA
Sbjct: 370 LRVPTSVIEGFEPSPAEASARDA 392


>gi|330906893|ref|XP_003295639.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
 gi|311332936|gb|EFQ96278.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
          Length = 438

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 187/383 (48%), Gaps = 11/383 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+++ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    +    
Sbjct: 59  LKDELVRAITDCGFEHPSEVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMD--- 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQ 122
           ++  P +A + L +  TRELA Q+  E          V      G +  ++      +  
Sbjct: 116 EKPEPGAATI-LVMCHTRELAYQIRNEYNRFAKFLPDVRVGVFYGGTPVQKDIELLSNKD 174

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG-FRDDIEFILDSSPKKRR 181
              HI+VGTPGR+   +R + L +++LK  VLDE D+MLD    R+D++ I  ++P+ ++
Sbjct: 175 THPHIIVGTPGRINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQ 234

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT++  +  + K + ++ + + +  E +       +  +     +++  + ++L 
Sbjct: 235 VMMFSATLNKDVRVVCKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLD 294

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    S   K+L E  F   A+   +SQ+ER    +  ++ + R+C++
Sbjct: 295 SLEFNQVIIFVRSTLRCSELDKLLRECNFPSTAVHSGISQEERIKRYKEFKEFQTRICVS 354

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TD+  RGID+  + + I+ ++    +  LHR GR GR G KG+S+  +   + +   + +
Sbjct: 355 TDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSI 414

Query: 360 FREANVSVVWEPAPSVEAIRERD 382
                V +   P   VE+    D
Sbjct: 415 EERFQVELPEFPENGVESATYMD 437


>gi|61367710|gb|AAX43036.1| eukaryotic translation initiation factor 4A isoform 1 [synthetic
           construct]
          Length = 407

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETIY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|115532546|ref|NP_001040788.1| hypothetical protein H20J04.4 [Caenorhabditis elegans]
 gi|24418257|gb|AAF39890.2| Hypothetical protein H20J04.4a [Caenorhabditis elegans]
          Length = 488

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 158/380 (41%), Gaps = 18/380 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F  +     I + L        T VQ A +   L   D+L  A+TG+GKT+AF + + 
Sbjct: 89  KKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPIL 148

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             L  +           AL + PTRELA Q+  +   L     +  +V +GG S+  + R
Sbjct: 149 QKLSVDP------YGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQAR 202

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L    H+VV TPGRL D I      I+ +   +     +  D          L    + 
Sbjct: 203 ELSERPHVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFES 262

Query: 180 RRMLMFS------ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 +       T +  +       +          +      ++ + V+  ++ +D 
Sbjct: 263 ISEKRQTLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDA 322

Query: 234 AIVNILRYHGAKN----AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQM 289
            +V +++ +  KN     ++F  T         +     F+V +L  ++ Q++R  AL  
Sbjct: 323 YLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSA 382

Query: 290 MRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349
            R    +V I TDVA+RG+D+P ++LV++  +   P+  +HR GR+ RAGR G ++  + 
Sbjct: 383 FRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVT 442

Query: 350 QNMQRRAERLFREANVSVVW 369
           Q      + + +     +  
Sbjct: 443 QYDVELLQAVEQVIGKKLDE 462


>gi|87125801|ref|ZP_01081644.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
 gi|86166610|gb|EAQ67874.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9917]
          Length = 396

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 2/343 (0%)

Query: 34  DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
            +  +DV+ +AQTG+GKT  F L +   L       +      AL + PTRELA QV   
Sbjct: 1   MISGRDVMAAAQTGTGKTAGFTLPMLERLCHGAR--AGRRQIRALVLTPTRELAAQVLDN 58

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
           +        +   V  GGV ++ + + L  G  ++V TPGRL D  +   +    ++ +V
Sbjct: 59  VRQYSCHLPLRSEVVFGGVKINPQIQRLAQGVDVLVATPGRLLDLHQQGAVRFEAVECLV 118

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEAD MLD+GF  DI  +L   P++R+ L+FSAT S  I  LA+      +++ +A  N
Sbjct: 119 LDEADRMLDMGFIHDIRRLLSRLPERRQTLLFSATFSAPIRKLAQGMLHHPLQIQVAPAN 178

Query: 214 RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273
           +    ++       +  +   + +++R    +  +VF  T+   ++    L +      A
Sbjct: 179 QTARSVEQTVHPCDMGRKAALLTHLIRSEDWQQVLVFSRTKHGANKVADQLNQEGLVAAA 238

Query: 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSG 333
           + G  SQ  R+ ALQ  +DG  RV +ATD+AARGID+  L  V++ +L +  E+ +HR G
Sbjct: 239 IHGNKSQGARTRALQGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIG 298

Query: 334 RTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVE 376
           RTGRAG  G ++ ++        + + R    ++        E
Sbjct: 299 RTGRAGESGHAISLVAAEEALLLKAIERLTGEALPRVEIQGFE 341


>gi|328868347|gb|EGG16725.1| putative RNA helicase [Dictyostelium fasciculatum]
          Length = 615

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 111/380 (29%), Positives = 184/380 (48%), Gaps = 17/380 (4%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           + F +I  P++   A +  G+ N T +Q       L   D++  A TGSGKT+AF L   
Sbjct: 114 QTFADIEIPRIFAHAFT--GFTNPTVIQAQSWPIVLSGNDMVGVAATGSGKTLAFILPSL 171

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
             ++ +  +    + PLAL +APTRELA Q+      +   T + +    GG    ++  
Sbjct: 172 MEII-KVPKRGYGATPLALVMAPTRELAKQIEDVARTVTKGTSIRMLCVYGGAGKGQQNS 230

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  ++VGTPGRL D       ++S +K +VLDEAD MLD+GF   IE I+   P++
Sbjct: 231 VLRSGVDLIVGTPGRLND--ILTPRHLSTVKFLVLDEADRMLDMGFMPQIERIIRQIPEQ 288

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---- 235
            + +MFSAT    +  L+  + ++ +++ + +   Q +    + V+   +   N +    
Sbjct: 289 HQTMMFSATWPKEVQGLSSKFLRNPLKLTVGTGELQANVNVTQHVIDNGAFSPNEMFEDL 348

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEH-LFQVVALSGELSQQERSNALQMMR 291
              V  +        I+FC+T+    + +  L          L     Q +R  +L+  R
Sbjct: 349 GKRVQDMLKSREDLLIIFCNTKRKCDQVSNFLDMKLQITCGVLHSGREQPQRERSLRQFR 408

Query: 292 DGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
                V +ATDVAARG+D+P ++ VI+ +     E+ +HR GRTGRAG KG +   I Q 
Sbjct: 409 HHEINVLVATDVAARGLDIPKVKAVINLDFPLGIEDYVHRIGRTGRAGAKGDAYTYISQT 468

Query: 352 MQR--RAERLFREANVSVVW 369
                   ++   A  +V  
Sbjct: 469 DDNLGALVQIMLRAGQTVPQ 488


>gi|258448717|ref|ZP_05696829.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
 gi|257857995|gb|EEV80884.1| DEAD/DEAH box helicase domain-containing protein [Staphylococcus
           aureus A6224]
          Length = 448

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 103/449 (22%), Positives = 204/449 (45%), Gaps = 14/449 (3%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+   L+  +++  +QT +GK+ AF L L   
Sbjct: 6   FEQFNLESSLIDAVKDLNFEKPTEIQNRIIPRILKRTNLIGQSQTSTGKSHAFLLPLMQL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRD 120
           + +E         P A+ +APTRELA Q+      L     GV V V IGG  + ++R+ 
Sbjct: 66  IDSE------IKEPQAIVVAPTRELAQQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +++GTP R+ D  +   L++     +V+DEAD M+DLG  +D+++I        
Sbjct: 120 CNAQPQLIIGTPTRINDLAKTGHLHVHLASYLVIDEADLMIDLGLIEDVDYIAARLEDNA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI   +      Y      V + S+ +   +I++  +    + +    +N++ 
Sbjct: 180 NIAVFSATIPQQLQPFLNKYLSHPEYVAVDSKKQNKKNIEFFLIPTKGAAKVEKTLNLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +     L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRDNANDLASSLNEAGIKVGMIHGGLTPRERKQQMKRIRNLEFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  VI+ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEEHNISLIE 359

Query: 361 RE----ANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                   V +       V+A  +R A R+ +D    + ++   +  +   +     +K 
Sbjct: 360 DRGFVFNTVDIKDGELKEVKAHNQRQA-RMRKDDHLTNQVKNKVRSKIKNKVKPGYKKKF 418

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
                ++ R       +           +
Sbjct: 419 KQEVEKMKRQERKQFSKQQNRQKRKQNKK 447


>gi|30022365|ref|NP_833996.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
 gi|29897922|gb|AAP11197.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
          Length = 436

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 180/367 (49%), Gaps = 10/367 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           +    + +A+ E  +   T +Q+ I     +   V+  +QTGSGKT A+ L   + + A 
Sbjct: 10  DFKPFLIDAVRELRFTEPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINAS 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGREL----EWLYAKTGVVVAVCIGGVSVHRERRDL 121
            +          +  APTRELA Q+  E+    ++      +     IGG    R    L
Sbjct: 70  REEV------QLVITAPTRELAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKL 123

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           +   HIVVGTPGR+ D +  + L +     +++DEAD MLD+GF  D++ I    PK  +
Sbjct: 124 KKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKIAARMPKNLQ 183

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
           ML+FSATI   +    K Y ++   ++I  +     +I++  V     ++ + +  +L  
Sbjct: 184 MLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKIDLVHKMLLQ 243

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
                A+VF +T+    +    L E   +V  + G+LS ++R   ++ +RD   +  +AT
Sbjct: 244 FKPYLAVVFTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQIRDLEFQYIVAT 303

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           D+AARGID+  +  VI+ +  S+ +  +HR  RT RAG  G++V +     +   + L +
Sbjct: 304 DLAARGIDIQGISHVINYQPPSDLDFFVHRVARTARAGHSGIAVTIYDPANEEALDSLEK 363

Query: 362 EANVSVV 368
           + ++   
Sbjct: 364 QRHIEFK 370


>gi|254519030|ref|ZP_05131086.1| ATP-dependent RNA helicase [Clostridium sp. 7_2_43FAA]
 gi|226912779|gb|EEH97980.1| ATP-dependent RNA helicase [Clostridium sp. 7_2_43FAA]
          Length = 382

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 188/375 (50%), Gaps = 11/375 (2%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K FEN+   + I   L+  G    T +QE I+   L + +++  ++TG+GKT+A+ L + 
Sbjct: 9   KSFENLKINEKIISGLNAMGIKEPTEIQEKIIPLALEKTNLIGQSETGTGKTLAYLLPII 68

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRE 117
             +               + +APT ELA+Q+   +  L   +G  +     IG  ++ R+
Sbjct: 69  ENIDINKKEM------QCIILAPTHELAIQINNTINELKKASGLEITSTPLIGSANIKRQ 122

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
             +L+    I+VG+ GR+ + I+ K ++   +K +V+DE D++LD      ++ I+  +P
Sbjct: 123 IDNLKAKPQILVGSAGRILELIKKKKVSAHTIKNIVIDEVDKLLDKNNLPTVKDIIKVTP 182

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  +++MFSAT++   T        + ++V     N+ + +I++  +     ++   +  
Sbjct: 183 KYTQIMMFSATLNG-KTLDIAKTLAEDIKVVSVKGNKVNENINHNYIKTDSRNKVETLRK 241

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           +L    +   +VF +   + +   + L+ +  +V A+ G    ++R  AL+  R G+  V
Sbjct: 242 LLNALKSPKVLVFNNDSYTTNTAVEYLSFNNVKVAAIGGNGKMEDRKRALENFRKGKINV 301

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            IA+D+AARG+D+  +  V++ ++  + ++ LHR+GR GRAG  G    ++    ++  +
Sbjct: 302 LIASDIAARGLDIKGVTHVVNFDIPEDSKDYLHRAGRVGRAGETGEVFSLVDDKEEKIIK 361

Query: 358 RLFREANVSVVWEPA 372
              +   +++     
Sbjct: 362 MHEKSFKINISERDL 376


>gi|223674049|pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
 gi|223674050|pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
           Rna
          Length = 412

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 24  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 84  AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 137

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 138 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 198 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 258 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 317

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 378 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 409


>gi|119572221|gb|EAW51836.1| hCG1998531, isoform CRA_g [Homo sapiens]
          Length = 484

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|114663437|ref|XP_001169835.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 9 [Pan
           troglodytes]
 gi|119572220|gb|EAW51835.1| hCG1998531, isoform CRA_f [Homo sapiens]
          Length = 466

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 78  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 137

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 138 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 191

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 192 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 251

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 252 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 311

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 312 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 371

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 372 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 431

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 432 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 463


>gi|114663439|ref|XP_001169952.1| PREDICTED: hypothetical protein isoform 14 [Pan troglodytes]
          Length = 484

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|114663452|ref|XP_001169793.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 7 [Pan
           troglodytes]
 gi|119572215|gb|EAW51830.1| hCG1998531, isoform CRA_a [Homo sapiens]
          Length = 461

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 73  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 132

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 133 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 186

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 187 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 246

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 247 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 306

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 307 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 366

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 367 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 426

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 427 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 458


>gi|84569979|gb|AAI10806.1| DDX19B protein [Homo sapiens]
          Length = 449

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 61  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 121 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 174

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 175 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 234

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 235 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 294

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 295 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 354

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 355 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 414

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 415 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 446


>gi|6005743|ref|NP_009173.1| ATP-dependent RNA helicase DDX19B isoform 1 [Homo sapiens]
 gi|55644171|ref|XP_511078.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 23 [Pan
           troglodytes]
 gi|114663444|ref|XP_001170208.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 18 [Pan
           troglodytes]
 gi|114663446|ref|XP_001170248.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 19 [Pan
           troglodytes]
 gi|114663448|ref|XP_001170270.1| PREDICTED: ATP-dependent RNA helicase DDX19B isoform 20 [Pan
           troglodytes]
 gi|10719979|sp|Q9UMR2|DD19B_HUMAN RecName: Full=ATP-dependent RNA helicase DDX19B; AltName: Full=DEAD
           box RNA helicase DEAD5; AltName: Full=DEAD box protein
           19B
 gi|237823851|pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|237823853|pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
           With The Dead-Box Helicase Ddx19
 gi|5701850|emb|CAB52189.1| DEAD Box Protein 5 [Homo sapiens]
 gi|13177688|gb|AAH03626.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [Homo sapiens]
 gi|119572212|gb|EAW51827.1| hCG2043426, isoform CRA_a [Homo sapiens]
 gi|119572216|gb|EAW51831.1| hCG1998531, isoform CRA_b [Homo sapiens]
 gi|193786528|dbj|BAG51311.1| unnamed protein product [Homo sapiens]
 gi|261857900|dbj|BAI45472.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
 gi|312152434|gb|ADQ32729.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19B [synthetic construct]
          Length = 479

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
 gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
           44928]
          Length = 854

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 223/466 (47%), Gaps = 9/466 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ + + L+E G  N   +Q A +   L  + VL  A+TGSGKT+AFGLA  + L    
Sbjct: 72  LPEELVKKLAENGVHNTFPIQAATIPDALAGRHVLGKARTGSGKTLAFGLAALANL---K 128

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            + +    PLAL + PTRELA+QV   L       G  +A   GG  ++++   L+ G  
Sbjct: 129 GKRARKGKPLALVLVPTRELAMQVSDALTPYGFAVGADIAAVYGGAPMYKQVYSLRRGVE 188

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++V TPGRL D I     ++S ++  +LDEAD+M D+GF   +  +L  +    + L+FS
Sbjct: 189 LLVATPGRLTDLIEQGECDLSEVEIAILDEADQMADMGFMPIVTELLSQTDPTGQRLLFS 248

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGA-- 244
           AT+  A+  L + Y  D V  ++ +++   + +D+  ++V  +D+      I   H    
Sbjct: 249 ATLDGAVDELVRQYMTDPVLHSVTADSEDSAQMDHHLLIVEPADKSMVTAEIAARHTPGD 308

Query: 245 ---KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F  T+    R  + + E     +AL G ++Q+ R+  L   ++GR  V +AT
Sbjct: 309 DDGRRTILFARTKLGADRIAEKIREAGVSALALHGGMTQRARTKTLADFKEGRVPVLVAT 368

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARGI +  ++LV+H + + +P++ LHR+GRT RAG  G  V ++    ++   RL  
Sbjct: 369 DVAARGIHVDGIDLVLHVDPAGDPKDYLHRAGRTARAGESGTVVTLVLPKQRKSTMRLLE 428

Query: 362 EANVSVVW-EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
           +A V       APS   +RE    R + + +         ++         D  +   G 
Sbjct: 429 QAGVDAELTRVAPSSAELRELTGGRPVAEYVAEADAYHAARRAAREARMGEDRREGRDGG 488

Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGS 466
            R +R G                   +D  R  +   G R   + +
Sbjct: 489 FRGNREGGFRGGREGRDGRDGRDGFRQDRDRFDRGHRGGRFEDRDN 534


>gi|124506095|ref|XP_001351645.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
 gi|23504573|emb|CAD51452.1| ATP-dependent RNA Helicase, putative [Plasmodium falciparum 3D7]
          Length = 1490

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 97/447 (21%), Positives = 190/447 (42%), Gaps = 12/447 (2%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
            +P  I + L ++ +  + ++Q   +   +  +DV+  A+TGSGKT+++   +   +L + 
Sbjct: 730  LPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQE 789

Query: 67   DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                    P+++ + PTREL++QV  E +       + +    GG ++ R+ + L+ G  
Sbjct: 790  P-LRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVE 848

Query: 127  I---VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
            I     G    +      K  N++ +  VVLDEAD +LDLGF   I  IL +  K ++  
Sbjct: 849  ILVGTPGRIIDILTISNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTA 908

Query: 184  MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            M SAT    I  +AK      + + +  + + +++I     ++  S +   ++ +L    
Sbjct: 909  MISATFPNYIQNMAKKLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWI 968

Query: 244  AKN-AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                 ++F + +         L ++ + ++ L G   Q +R   L+  +    +V IAT 
Sbjct: 969  KYGLVLIFVNKQIEADLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATS 1028

Query: 303  VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR- 361
            V ARGID+ ++ LVI+ +   + E+ +HR GRTGR+   G +   I  N   +A  ++  
Sbjct: 1029 VMARGIDIKNIILVINYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNL 1088

Query: 362  ------EANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEK 415
                    N ++          I       I +     +   G + K       +    +
Sbjct: 1089 LKNNIYYLNKTIDIPQDLENMIIEYTKINSINEKQKGKNKNLGYKGKGYKFTPDEKSRHQ 1148

Query: 416  IAAGFLRIHRAGLCAPEEITPVSLVSG 442
            I     +         +E   + +   
Sbjct: 1149 IDIALAKKELGLTQENDENEKLQVDDE 1175


>gi|323489782|ref|ZP_08095007.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
 gi|323396520|gb|EGA89341.1| RNA helicase-like protein [Planococcus donghaensis MPA1U2]
          Length = 386

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 96/363 (26%), Positives = 179/363 (49%), Gaps = 6/363 (1%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M   + +  +  E   + G+     +Q+ ++   L   D++  + TGSGKT+A+ L +  
Sbjct: 1   MTFIKELSPIWQEKWEKAGFEAAMPIQDQMIPEMLAGNDIVAESPTGSGKTLAYVLPILE 60

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  E        A  A+ +AP++EL++Q+   L      T V V   IGG ++ R+   
Sbjct: 61  RVNPEKP------AIQAMIVAPSQELSMQIVNVLREWTEGTAVTVTQLIGGANMQRQLEK 114

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+    IVVGTPGRL + ++ K L +  ++ +VLDE D+++    R+ ++ +++ +   R
Sbjct: 115 LKKKPTIVVGTPGRLNELVKTKKLKMHEIRMLVLDEGDQLMAREHRNIMKDLIEKTQHDR 174

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++++ SATI+  I  +A+   +   R+ + +E+         + +         ++  + 
Sbjct: 175 QLVLVSATITEEIELVAERLMQHPTRLKVTAEDLPMFGKVTHSFIKVDERDKTELLRSIS 234

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
           +     A+ F +    +      L     ++V L  E+ + ER  AL   R G   V IA
Sbjct: 235 HIPGMKALAFVNNLDQLLMKENKLKFRDAKIVTLHSEMKKDERKKALDAFRKGEVAVLIA 294

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           T+VAARG+D+  +  V+H ++    E  LHRSGRTGRAG  G  + ++    +R  ++  
Sbjct: 295 TEVAARGLDIDLVTHVVHVDVPQTIEQYLHRSGRTGRAGADGEVLTLLAYADERHYKKFT 354

Query: 361 REA 363
           +E 
Sbjct: 355 KEL 357


>gi|159042331|ref|YP_001541583.1| DEAD/DEAH box helicase domain-containing protein [Caldivirga
           maquilingensis IC-167]
 gi|157921166|gb|ABW02593.1| DEAD/DEAH box helicase domain protein [Caldivirga maquilingensis
           IC-167]
          Length = 359

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 182/359 (50%), Gaps = 11/359 (3%)

Query: 3   IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL 62
           +F  + + +  A+SE G+   T VQ +++   L   +V + A+TGSGKT A+ L   S +
Sbjct: 2   VFNLLKEELRRAISEYGFNEPTEVQRSVIPKILDGFNVAMQARTGSGKTAAYLLPTMSMM 61

Query: 63  LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
             +           AL I+PTRELA+Q+  +       T    AV  GGV    + + L+
Sbjct: 62  KGDLGE--------ALVISPTRELALQIMNQFLIFNKYTKFNSAVVYGGVGYSGQVKALR 113

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           + + IV  TPGRL D      +++S++K +++DE D MLD+GF  D+  I   +  +++ 
Sbjct: 114 DASLIVA-TPGRLLDLTGKSIVDLSNVKYLIIDEVDRMLDMGFIKDVYTISSLTGNRKQT 172

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
              +AT+   +  + K   ++ + + +++   +   +D    LV  S R    +      
Sbjct: 173 HAATATLPSEVHDVVKRVLRNPLFIRVSNHEYELPMVDQLVYLVDGSWRSKYGLT--GKV 230

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               +I+F +TR    R  + L     +V+ L G + Q+ R + L+  R+  +   I+TD
Sbjct: 231 LEGKSIIFVNTRERAYRLYRQLRNDGLRVLLLHGGMRQETRESTLRRFRELDSGSLISTD 290

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           +A+RG+D+ D+ L+++ +   +PE  +HR GRT R  R+G ++ +  ++  R    + +
Sbjct: 291 LASRGLDIIDVNLILNFDAPRDPETYIHRIGRTARLNRRGKAITLATRDELRILNEVTK 349


>gi|260577895|ref|ZP_05845826.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603989|gb|EEW17235.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
           43734]
          Length = 458

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 120/391 (30%), Positives = 185/391 (47%), Gaps = 22/391 (5%)

Query: 3   IFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I EAL+     +  ++QE  L   L+  DV+  A+TG GKT+ FG+ +  
Sbjct: 23  TFSSLGVAAEITEALATANITHAFAIQEYTLPIALKGSDVIGQARTGMGKTLGFGIPVLD 82

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            +  +    +P   P AL + PTREL +QV  +L        V V           + R 
Sbjct: 83  RVFDDATVTAPDGTPRALIVVPTRELCLQVTDDLTLAARNLRVPVETEGASQRKKSKTRA 142

Query: 121 LQNG------------------AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD 162
           LQ                      +VVGTPGRL D  +   L ++ ++ VVLDEADEMLD
Sbjct: 143 LQVHAVYGGVRFDKQTTALARGVDVVVGTPGRLLDLAQQGHLQLNTVEIVVLDEADEMLD 202

Query: 163 LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS--ENRQHSDID 220
            GF DD+  I+  +  +R+ ++FSAT+   I  L + + +  V +   S      H    
Sbjct: 203 QGFLDDVRSIITQTSPQRQTMLFSATMPGPIAALTRTFMRHPVLIQADSAATEATHESTK 262

Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                    DR +A+  IL+  G   +IVF  T+   +   + LA+  F+V A+ G++ Q
Sbjct: 263 QVVFQSHKLDRLSALARILQSPGRGRSIVFARTKRQAAGVAEELAKLGFRVGAVHGDMRQ 322

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R  +L   R     V +ATDVAARGID+ D+  VI+ ++  +    +HR GRTGRAG 
Sbjct: 323 NDREESLDEFRRNEVDVMVATDVAARGIDIEDVTHVINYQVPDDERTYVHRIGRTGRAGN 382

Query: 341 KGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            G +V +I  +   R   +     + +   P
Sbjct: 383 TGTAVSLIGWDEVARWNAISDALGLGLQDPP 413


>gi|190405946|gb|EDV09213.1| dead box protein [Saccharomyces cerevisiae RM11-1a]
          Length = 431

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 165/385 (42%), Gaps = 22/385 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   + + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +
Sbjct: 1   MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    +       S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++ 
Sbjct: 61  LTKWSEDP------SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------- 169
            DLQ   H ++ TPGRL  HI   G +             +  D+               
Sbjct: 115 LDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCIS 174

Query: 170 -----EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                +                +  +  +           V             I+Y  V
Sbjct: 175 ALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILV 234

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              + +     +     +  K AI+F +   +     + L +   +V +L  ++ QQER+
Sbjct: 235 PEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERT 294

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           N+L   R   AR  IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G +
Sbjct: 295 NSLHRFRANAARTLIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354

Query: 345 VFVIPQNMQRRAERLFREANVSVVW 369
           +  + Q    R + +    N  +  
Sbjct: 355 ISFVTQRDVSRIQAIEDRINKKMTE 379


>gi|91084021|ref|XP_975350.1| PREDICTED: similar to pre-mRNA-splicing ATP-dependent RNA helicase
           PRP28 [Tribolium castaneum]
 gi|270008001|gb|EFA04449.1| hypothetical protein TcasGA2_TC014753 [Tribolium castaneum]
          Length = 762

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 116/399 (29%), Positives = 194/399 (48%), Gaps = 28/399 (7%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL-- 62
             I + + E + + GY   T +Q   +   ++ +D++  A+TGSGKT+AF + L S +  
Sbjct: 341 SGIQKELLEIIDKVGYKEPTPIQRQAIPIGMQNRDIIGVAETGSGKTLAFLIPLLSWIQS 400

Query: 63  LAENDRFSPAS-APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L + +R   A   P A+ +APTRELA Q+  E        G+   V +GG+S   +   L
Sbjct: 401 LPKIERTEDADQGPYAIILAPTRELAQQIEEETVKFGQPLGIRTVVVVGGLSREEQGFRL 460

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP---- 177
           + G  IV+ TPGRL D +  + L ++    +V+DEAD M+DLGF  D++ IL+  P    
Sbjct: 461 RMGCEIVIATPGRLIDVLENRYLVLNQCTYIVMDEADRMIDLGFEADVQKILEYMPVTNL 520

Query: 178 ---------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                K R+ +MF+AT+ PA+  LA+ Y +    V I S  +  
Sbjct: 521 KPDSEEAEDSKIILANYNSKKKYRQTVMFTATMPPAVERLARTYLRRPAVVYIGSIGKPT 580

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
             ++    ++  +D+   ++  L        I+F + +       K L +  +    L G
Sbjct: 581 ERVEQIVHIMTENDKRKKLMEYLSKGVDPPIIIFVNQKKGADVLAKGLEKLGYNACTLHG 640

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q++R  AL  ++ G   + +ATDVA RGID+ D+ +VI+ +++   E+  HR GRTG
Sbjct: 641 GKGQEQREYALASLKSGAKDILVATDVAGRGIDIKDVSVVINYDMAKTIEDYTHRIGRTG 700

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSV 375
           RAG+ G+++     +       L +    S V    P +
Sbjct: 701 RAGKSGVAISFCTNDDSALFYDLKQMLLSSPVSTCPPEL 739


>gi|9963783|gb|AAG09691.1|AF183422_1 RNA helicase [Homo sapiens]
          Length = 478

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGNPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV+ LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVLMLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|323333197|gb|EGA74596.1| Dbp8p [Saccharomyces cerevisiae AWRI796]
          Length = 431

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 166/385 (43%), Gaps = 22/385 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   + + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +
Sbjct: 1   MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    +       S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++ 
Sbjct: 61  LTKWSEDP------SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------- 169
            DLQ   H ++ TPGRL  HI   G +             +  D+               
Sbjct: 115 LDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCIS 174

Query: 170 -----EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                +                +  +  +           V             I+Y  V
Sbjct: 175 ALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILV 234

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              + +     +     +  K AI+F +   +     + L +   +V +L  ++ QQER+
Sbjct: 235 PEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERT 294

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           N+L   R   AR+ IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G +
Sbjct: 295 NSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354

Query: 345 VFVIPQNMQRRAERLFREANVSVVW 369
           +  + Q    R + +    N  +  
Sbjct: 355 ISFVTQRDVSRIQAIEDRINKKMTE 379


>gi|194212659|ref|XP_001499618.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 10
           [Equus caballus]
          Length = 874

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 109/419 (26%), Positives = 191/419 (45%), Gaps = 10/419 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +   
Sbjct: 71  FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     +++       L I+PTRELA Q    L  +         + IGG  +  E   +
Sbjct: 131 LY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 188

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
            N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PKKR+
Sbjct: 189 NNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQ 248

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + + L
Sbjct: 249 TLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFL 308

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARV 297
           R H  K +IVF S+   V    +V         ++AL G   Q  R          RA V
Sbjct: 309 RSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAV 368

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQRRA 356
             ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   +   
Sbjct: 369 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKGMV 428

Query: 357 ERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPE 414
           ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D E
Sbjct: 429 QQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKDKE 487


>gi|154340431|ref|XP_001566172.1| ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063491|emb|CAM39671.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 897

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 165/364 (45%), Gaps = 10/364 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F  +P  Q     L    Y  LT +Q+  L+  L   DVL +A+TGSGKT+ F + +   
Sbjct: 71  FTELPISQRTQMGLERGHYTALTPIQKGALHLALAGFDVLGAAKTGSGKTLCFVIPVLER 130

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  E+  +S      AL ++PTRELA+Q+ + ++ +  K  +  A+  GG  V  ER+ L
Sbjct: 131 LYREH--WSSDMGVGALLLSPTRELALQIFKVMQLVGYKHVLSAALLTGGRDVREERKRL 188

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
              + IV      L        L + +++   +DEAD +LD+GFR+ I  IL   P +R+
Sbjct: 189 HAISIIVGTPGRVLHHLQDDAELVLDNMQLFCMDEADRLLDMGFREAITSILKYLPPQRQ 248

Query: 182 MLMFSATISPAITT--LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            L+FSAT +  +             V     +       +    V+V L  + +A++  L
Sbjct: 249 SLLFSATQTTDVQMLAQMSLKNPRYVSTQAITAAPTPMTLCQNFVVVELHRKLDALLMFL 308

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVL----AEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           + H     +VF ST   V            +     + L+ ++ Q  R          ++
Sbjct: 309 KRHPNDKIVVFVSTCNQVKFMHLAFSKILKKMRIPSMCLTSKMKQFRREEVFLTFCRCKS 368

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
            V   TDVA+RG+D P +  V+  +   + +  +HR+GRT RAG +G+S+  +       
Sbjct: 369 AVLFCTDVASRGLDFPLVHWVVQYDCPESAQTYIHRAGRTARAGARGVSLLFLTPREAPM 428

Query: 356 AERL 359
              L
Sbjct: 429 LSYL 432


>gi|6321963|ref|NP_012039.1| Dbp8p [Saccharomyces cerevisiae S288c]
 gi|731740|sp|P38719|DBP8_YEAST RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|160380633|sp|A6ZT77|DBP8_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP8; AltName: Full=DEAD
           box protein 8
 gi|458901|gb|AAB68014.1| Yhr169wp [Saccharomyces cerevisiae]
 gi|151944115|gb|EDN62408.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
 gi|207344531|gb|EDZ71646.1| YHR169Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256273978|gb|EEU08896.1| Dbp8p [Saccharomyces cerevisiae JAY291]
 gi|259146927|emb|CAY80183.1| Dbp8p [Saccharomyces cerevisiae EC1118]
 gi|285810075|tpg|DAA06862.1| TPA: Dbp8p [Saccharomyces cerevisiae S288c]
 gi|323308784|gb|EGA62022.1| Dbp8p [Saccharomyces cerevisiae FostersO]
 gi|323337360|gb|EGA78613.1| Dbp8p [Saccharomyces cerevisiae Vin13]
 gi|323348321|gb|EGA82570.1| Dbp8p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323354703|gb|EGA86538.1| Dbp8p [Saccharomyces cerevisiae VL3]
          Length = 431

 Score =  163 bits (412), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 166/385 (43%), Gaps = 22/385 (5%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           M  F+++   + + E+L        T++Q+A +   L  +D +  A+TGSGKT+AF   +
Sbjct: 1   MADFKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPM 60

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +    +       S    + + PTRELA+Q+  +   L +   + V+V +GG S+ ++ 
Sbjct: 61  LTKWSEDP------SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQA 114

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI--------- 169
            DLQ   H ++ TPGRL  HI   G +             +  D+               
Sbjct: 115 LDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCIS 174

Query: 170 -----EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV 224
                +                +  +  +           V             I+Y  V
Sbjct: 175 ALPPKDKRQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILV 234

Query: 225 LVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
              + +     +     +  K AI+F +   +     + L +   +V +L  ++ QQER+
Sbjct: 235 PEHVKEAYLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERT 294

Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
           N+L   R   AR+ IATDVA+RG+D+P +ELV++ ++ S+P+  +HRSGRT RAGR G +
Sbjct: 295 NSLHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDA 354

Query: 345 VFVIPQNMQRRAERLFREANVSVVW 369
           +  + Q    R + +    N  +  
Sbjct: 355 ISFVTQRDVSRIQAIEDRINKKMTE 379


>gi|302692692|ref|XP_003036025.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
 gi|300109721|gb|EFJ01123.1| hypothetical protein SCHCODRAFT_256129 [Schizophyllum commune H4-8]
          Length = 760

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 112/458 (24%), Positives = 182/458 (39%), Gaps = 64/458 (13%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
            +IP  I + +   GY   + +Q   +   L+ +D++  A+TGSGKT AF + L + + A
Sbjct: 320 SDIPSSILDVIETIGYKEPSPIQRQAIPIGLQNRDIIGIAETGSGKTAAFVIPLLAFISA 379

Query: 65  ENDRFSPAS--APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
                       P AL +APTRELA Q+  E     +  G      +GG SV  ++ +L+
Sbjct: 380 VAPLTDENRHLGPFALILAPTRELAQQIEVETRKFASGLGYTCVSIVGGRSVEEQQFNLR 439

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
            GA I++ TPGRL D +    L +S  + VV+DEAD M+ LGF  D+ FILD  P +   
Sbjct: 440 EGAEIIIATPGRLKDVLERHVLVLSQCRYVVMDEADRMVHLGFEPDLNFILDQLPAETME 499

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENR---------------------------- 214
              S  +          +   A+ ++     +                            
Sbjct: 500 GEESGDMMVVDDNRKHRHDDHAMDIDGEQRMKLVKKGRTRVTTLFSATMPPAVERLARKY 559

Query: 215 ----------------QHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVS 258
                              +     V      +   +  +         IVF + +    
Sbjct: 560 LRRPAIITIGEAGRAVDTVEQRVEFVNGDEKKKHRLLEILNSGQYPSPIIVFVNQKKMAD 619

Query: 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318
              K L    +    L    +Q++R  AL  +R G A + +ATD+A RGID+ D+ LV++
Sbjct: 620 MVAKDLGRAGWSASTLHSGKNQEQREAALASLRSGEADILVATDLAGRGIDVQDVSLVVN 679

Query: 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
            +++   E  +HR GRTGRAG+ G ++  +          L       +   P   V   
Sbjct: 680 FQMAGTIEAYVHRIGRTGRAGKLGTAITFLTNEDDEVMYDL----KQEISKSPVSKV--- 732

Query: 379 RERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKI 416
                      P+ L   +  + K+   +  K DP+ I
Sbjct: 733 -----------PVELAKHEAAQHKVTRDMKRKRDPDDI 759


>gi|294884893|gb|ADF47451.1| vasa PlVAS1-like protein [Dugesia japonica]
          Length = 802

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 180/355 (50%), Gaps = 11/355 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+P  +   ++   Y  LT VQ+  +      +D++  AQTGSGKT AF + +  +L  E
Sbjct: 368 NLPDFLVSNINFLRYSKLTPVQKYAIPIIDTRRDLMACAQTGSGKTAAFLIPIIKSL-HE 426

Query: 66  NDRFSPASA---PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
           N   +PASA   P AL +APTREL  Q+      L   + V  A   GG+ +++ RR++Q
Sbjct: 427 NIVDAPASAVAFPKALIMAPTRELCRQIFTAARQLCRGSNVKCAYIYGGIEMNKSRRNIQ 486

Query: 123 NG-AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDD------IEFILDS 175
           +    I+V TPGRL   +    +++ +LK  +LDEAD ML+     +      ++     
Sbjct: 487 SSGCDILVATPGRLIHFLELVWISLRYLKFFILDEADRMLESEGFYESVNKIYVDANCSG 546

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
             +  ++ MFSAT    I +LA+N  K+ + + +      ++D+    +     ++ N  
Sbjct: 547 DDRTIQISMFSATFPNEIQSLARNLLKNYLFLAVGVVGSANTDVKQEIIQTDQREKVNTA 606

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
           ++ ++    +  ++F  ++     F   L    F+   + G+  Q++R  AL   + GR 
Sbjct: 607 IDYIKTIPDEKTLIFVESKRMADFFGIKLGFLGFKATTIHGDREQEQREIALNDFKSGRV 666

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
              +AT+VAARG+D+P ++ VI+ ++  + +  +HR GRTGR G  G ++     
Sbjct: 667 NFMVATNVAARGLDIPKVDNVINIDMPGDIDTYVHRIGRTGRCGNVGRAISFFDD 721


>gi|301093251|ref|XP_002997474.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
 gi|262110730|gb|EEY68782.1| ATP-dependent RNA helicase, putative [Phytophthora infestans T30-4]
          Length = 489

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 98/363 (26%), Positives = 184/363 (50%), Gaps = 9/363 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F ++P  +   +AL + G+  +T +Q   + P L  +D+L +A+TGSGKT++F +     
Sbjct: 107 FASLPLSEPTRKALVDMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVEL 166

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L     RF+       + I+PTRELA+Q+   +  +         + +GG +   E   L
Sbjct: 167 L--HKVRFTARKGTGCIVISPTRELALQIYGVVRDICKYHSQTHGIVMGGANRRAEAERL 224

Query: 122 QNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
             G +I++ TPGRL DH++        +L+ +V+DEAD +L +GF +++  I+   PK+R
Sbjct: 225 VKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKER 284

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI---DYRAVLVALSDRDNAIVN 237
           + ++FSAT +  +  LA+   K+        E    + +   +   V+     R   +  
Sbjct: 285 QTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFT 344

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
            L+ +  K  +VF S+ ++V  + ++L      V+ + G+  Q +R+       + +  +
Sbjct: 345 FLKKNLKKKVMVFFSSCSAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGI 404

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR-AGRKGMSVFVIPQNMQRRA 356
            + TDVAARG+D+P ++ +I  +   +P   +HR GRT R A  KG ++ ++  +     
Sbjct: 405 LLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFL 464

Query: 357 ERL 359
           + L
Sbjct: 465 KYL 467


>gi|195572770|ref|XP_002104368.1| pit [Drosophila simulans]
 gi|194200295|gb|EDX13871.1| pit [Drosophila simulans]
          Length = 918

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 177/351 (50%), Gaps = 7/351 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +    A+ E G+  +T +Q   L P L+ +D++ +AQTGSGKT+AF +     +    
Sbjct: 194 VSEATLRAIKEMGFTEMTEIQAKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELI--NK 251

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            RF P +    + I+PTREL++Q    L+ L A       + +GG +   E   L  G +
Sbjct: 252 LRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGIN 311

Query: 127 IVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL DH          +L+ +++DE D +L++GF ++++ I++  PK+R+ ++F
Sbjct: 312 ILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLF 371

Query: 186 SATISPAITTLAK---NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           SAT +  I  L+K     +   V V+   +      ++   ++     R   +   L+ +
Sbjct: 372 SATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKN 431

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K  +VF S+  SV    ++       V ++ G+  Q +R+       +  + + + TD
Sbjct: 432 RKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD 491

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRA-GRKGMSVFVIPQNM 352
           VAARG+D+P ++ ++  +   +P   +HR GRT +  G  G ++ ++    
Sbjct: 492 VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTAKGSGTSGHALLLMRPEE 542


>gi|312380576|gb|EFR26532.1| hypothetical protein AND_07336 [Anopheles darlingi]
          Length = 608

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 147/374 (39%), Gaps = 21/374 (5%)

Query: 1   MKIFENIPQV------IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +  V      +   ++   Y   T VQ   +   L E  +   A TGSGKT AF
Sbjct: 137 IESFEELSSVYKVSNRLVANIAAC-YSAPTPVQMQAIPVLLHETSLHACAPTGSGKTAAF 195

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
            + +   L     +        AL I PTRELA Q  RE   L     +   V       
Sbjct: 196 LIPILHHL-----KGPTKCGFRALIICPTRELAKQTQREALRLGDGMNIRTHVIRTVDDR 250

Query: 115 HRERR----DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
            +         +    +            +   +++S+++ VV+DEAD++ +       E
Sbjct: 251 SKCDYTLESGRKYDILVTTPNRICYLLAQKPPQIDLSNIQWVVVDEADKLFEDSKNSFRE 310

Query: 171 FILDSSPKKRRMLM----FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV 226
            +                FSAT +        +     +R +I   N     ++ + +  
Sbjct: 311 QLDTVLNACVNPTKVVALFSATQTREADQWVASNVPRRIRFSIGQANSAVDSVEQKLLFT 370

Query: 227 ALSD-RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
                +  A   ++    +   +VF  ++    +    L      V  +  + SQ+ER N
Sbjct: 371 GNESGKLLAFRELVAQGLSPPVLVFVQSKDRAQQLFTELIYDGLNVDVIHSDRSQRERDN 430

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
            ++  R+G+  + I T++ +RGID   + LV++ +   +  + +HR GRTGRAGR+G ++
Sbjct: 431 VVRAFREGKIWILICTELMSRGIDFKGVNLVVNYDFPPSTISYVHRIGRTGRAGRQGKAI 490

Query: 346 FVIPQNMQRRAERL 359
               ++     +R 
Sbjct: 491 TFFTKDDTANLKRY 504


>gi|324503844|gb|ADY41663.1| ATP-dependent RNA helicase DDX10 [Ascaris suum]
          Length = 826

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 169/403 (41%), Gaps = 10/403 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F   P      + L E  +   T +Q   L   L   DV+ +A+TGSGKT+A  + L
Sbjct: 65  LQSFSQFPLSSATLKGLEESNFKRPTEIQRDSLQYSLTGVDVVGAAKTGSGKTLALLIPL 124

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L  +    S      AL I+PTRELA Q    L  + A      A+ IGG  V  E+
Sbjct: 125 LECLWRQRWSRS-TDGLGALVISPTRELAYQTFHVLNKIGAHHNFSAALLIGGTDVEFEK 183

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L     +V      L         +   L+ +++DEAD +LDLGF+  +  I+++ P 
Sbjct: 184 NRLATMNIVVCTPGRLLQHMDENVSFSCEQLQILIIDEADRILDLGFQQQMNAIVENLPS 243

Query: 179 KRRMLMFSATISPAITTLAKN--YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
            R+ L+FSAT +  +  LA+        V V+  +       +    ++ A  ++ N + 
Sbjct: 244 TRQTLLFSATQTKNVNDLARLALKDPVYVSVHENAPQATPEQLQQSYLICADEEKINMLW 303

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN---ALQMMRDG 293
           + L  H  K  ++F S        T+ L         +    + ++        +  R  
Sbjct: 304 SYLVNHRKKKTLIFVSCCKQARFLTEALCHLRPGTSLMGLWGTMKQSRRLDVFHKFDRKT 363

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ 353
            A   IATDVA+RG+D   ++ V+  +  S  ++ +HR GRT R   KG  + V+  + +
Sbjct: 364 GAAAMIATDVASRGLDFARVDCVLQLDCPSTVDDYIHRVGRTARMDAKGEGILVLTPSQE 423

Query: 354 RRAERLFREANVSVVWEPAPSVE--AIRERDAQRILQDPLFLD 394
                     NV +        +   IR++    I Q P   +
Sbjct: 424 EAMVACLTAKNVPISKIRVDQRQLLDIRKKLQSTIAQFPSLKE 466


>gi|255719254|ref|XP_002555907.1| KLTH0H00638p [Lachancea thermotolerans]
 gi|238941873|emb|CAR30045.1| KLTH0H00638p [Lachancea thermotolerans]
          Length = 433

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 102/419 (24%), Positives = 171/419 (40%), Gaps = 22/419 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I + + EAL        T++Q+A +   L+ KD +  A+TGSGKT+AFG  + +    + 
Sbjct: 10  ISKWLVEALQAMKITQPTAIQKACIPQILQGKDCIGGAKTGSGKTIAFGAPMLTKWSEDP 69

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
                 S    + + PTRELA+Q+  +   L +   + VA+ +GG S+  +  +LQ   H
Sbjct: 70  ------SGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVALVVGGESIVDQAINLQRKPH 123

Query: 127 IVVGTPGRLCDHIRGKGLNIS--------------HLKAVVLDEADEMLDLGFRDDIEFI 172
            +V TPGR+  HI   G +                 +             +      E  
Sbjct: 124 FIVATPGRMAHHIMNSGEDTIGGLKRAKFLVLDEADILLTDTFSEHLATCISILPPKEKR 183

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD 232
                         A  +              V               Y  V   + +  
Sbjct: 184 QTLLFTATVTDQVKALQNAPAAEGKPPLFSYEVESMDKVAIPSTLKTTYLLVPEQVKEAY 243

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              +     +   +AI+F +   +     + L +   +V +L  ++ QQER+N+L   R 
Sbjct: 244 LYQILTNATYNESSAIIFVNRTVTAEILRRTLKQLDVRVASLHSQMPQQERTNSLHRFRA 303

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
             ARV IATDVA+RG+D+P ++LVI+ ++SSNP+  +HR+GRT RAGR G S+  +    
Sbjct: 304 NAARVLIATDVASRGLDIPTVQLVINYDISSNPDTFIHRAGRTARAGRSGESICFVAPRD 363

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
             R E +    N  +         A+  +   ++       +S+   EK+        H
Sbjct: 364 VSRIEAIEERINKKMEEFKDVHDTAVIRKALNKVT--VAKRESLMSMEKENFGERRKLH 420


>gi|67971948|dbj|BAE02316.1| unnamed protein product [Macaca fascicularis]
          Length = 484

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S + + N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVESAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|270007520|gb|EFA03968.1| hypothetical protein TcasGA2_TC014113 [Tribolium castaneum]
          Length = 482

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 195/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +   
Sbjct: 115 NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQQID-- 172

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 173 ----TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 228

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 229 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 288

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGA 244
           SAT+   +  + K++ ++ VR+ +  E      I      +     +   + ++      
Sbjct: 289 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 348

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 349 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 408

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++  + +  +R  + + +  N
Sbjct: 409 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIEQFYN 468

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 469 TKIDEMPMNVADLI 482


>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
 gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
           ingrahamii 37]
          Length = 441

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 177/376 (47%), Gaps = 11/376 (2%)

Query: 10  VIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND-- 67
            +   L+E  Y   T +Q   +   L  +D++  A TGSGKT AF L L           
Sbjct: 26  PLLSRLTELEYQQPTPIQAKAIPSVLAGRDLIAGANTGSGKTAAFALPLLQQFGQHLPIN 85

Query: 68  -----RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG--VVVAVCIGGVSVHRERRD 120
                +    +    L + PTRELA QV   ++   A     +      GGVS + +   
Sbjct: 86  KTLSSKNREGNYVAGLILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFGGVSANTQMLA 145

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           L+ G  I+V TPGRL D I    + +  +K +VLDEAD ML LGF D++  +L   P  +
Sbjct: 146 LRGGTDILVATPGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLALLPSSK 205

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
           ++L+FSAT    +  L +    D V + + S +        R   V    +   + ++++
Sbjct: 206 QILLFSATFPEQVQALTQELLNDPVEIQLQSSDASTL--VQRVFTVNKGQKTALLAHLIK 263

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
            H  + A++F + + S +   + L++         G+  Q  RS  L   + G   V IA
Sbjct: 264 QHQWQQALIFVNAKNSCNHLAEKLSKRGISAEVFHGDKGQGARSRVLDAFKAGEIDVLIA 323

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           TD+AARG+D+  L +VI+ +L  +P + +HR GR+GRAG  G+++ +I  +       + 
Sbjct: 324 TDIAARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDLHHFNVIE 383

Query: 361 REANVSVVWEPAPSVE 376
           ++  + +  E     E
Sbjct: 384 KKNKLRLEREQVAGFE 399


>gi|254585603|ref|XP_002498369.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
 gi|238941263|emb|CAR29436.1| ZYRO0G08580p [Zygosaccharomyces rouxii]
          Length = 539

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 182/381 (47%), Gaps = 18/381 (4%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F ++     I   +S+  +   T +Q       L  +DV+  A+TGSGKT AFG+    
Sbjct: 129 SFSHLSLKPEIQSEISK--FPKPTPIQSVSWPYLLSGRDVIGVAETGSGKTFAFGVPAID 186

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L++  D  +   +   L I+PTRELA Q    L  L  K G+      GGV   +E+R+
Sbjct: 187 QLVSNGD--AKRKSVKVLVISPTRELASQTYDNLIILTNKVGLECCCVYGGV-PKQEQRN 243

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
               + +VV TPGRL D I  + +++S ++ +VLDEAD ML+ GF +DI+ I++ +  + 
Sbjct: 244 QLRNSQVVVATPGRLLDLINEQSVDLSQVQYLVLDEADRMLEKGFEEDIKNIINQTNSRD 303

Query: 181 RMLMFSATISPAITTL---AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV- 236
           R  +      P                V +    E   +  I     ++    +D  ++ 
Sbjct: 304 RQTLMFTATWPKEVRELASTFMRDPVKVSIGNRDELSANKRITQIVEVIEPRQKDRKLLE 363

Query: 237 ----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                          ++F   +   SR    L  + + V A+ G+LSQQ+R++AL   + 
Sbjct: 364 LLRKYQSGAKKDDKVLIFALYKKEASRVENNLKYNGYDVAAIHGDLSQQQRTSALNDFKA 423

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G++ + +ATDVAARG+D+P+++ VI+       E+ +HR GRTGRAG+ G +  +   N 
Sbjct: 424 GKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTDNE 483

Query: 353 QRRAERL---FREANVSVVWE 370
           +  A  L      AN  V  E
Sbjct: 484 KHLAGALVNVLNGANQPVPEE 504


>gi|29351650|gb|AAH49261.1| Ddx10 protein [Mus musculus]
          Length = 891

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 84  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 143

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 144 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 201

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 202 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 261

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 262 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 321

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 322 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 381

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 382 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 441

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 442 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 501

Query: 413 PE 414
            E
Sbjct: 502 KE 503


>gi|74219920|dbj|BAE40541.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKASQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|294461150|gb|ADE76139.1| unknown [Picea sitchensis]
          Length = 427

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 175/371 (47%), Gaps = 11/371 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 53  LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVA 112

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +       
Sbjct: 113 GQVA------ALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNEC 166

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K LN+ +++  +LDE D ML+    R D++ I   +P  ++++
Sbjct: 167 PHIVVGTPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVM 226

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 227 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +    +   K+L E  F  + +   ++Q+ER    +  ++G  R+ +ATD
Sbjct: 287 DFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATD 346

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +V++ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 347 LVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 406

Query: 362 EANVSVVWEPA 372
              V +   PA
Sbjct: 407 RFEVDIKELPA 417


>gi|299758408|ref|NP_001177648.1| eukaryotic initiation factor 4a [Tribolium castaneum]
          Length = 419

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 113/374 (30%), Positives = 195/374 (52%), Gaps = 7/374 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +   
Sbjct: 52  NLKEELLRGIYAYGFEKPSAIQQRAIIPCVKGHDVIAQAQSGTGKTATFSISILQQID-- 109

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
               +      AL +APTRELA Q+ + +  L          CIGG +V  + R L+ G 
Sbjct: 110 ----TSLRECQALILAPTRELAQQIQKVVIALGDFMSAQCHACIGGTNVREDMRKLETGV 165

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVGTPGR+ D I  + L  + +K  VLDEADEML  GF+D I  +        ++++ 
Sbjct: 166 HVVVGTPGRVYDMINRRSLRANFIKMFVLDEADEMLSRGFKDQIHDVFRMLNSDVQVILL 225

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY-RAVLVALSDRDNAIVNILRYHGA 244
           SAT+   +  + K++ ++ VR+ +  E      I      +     +   + ++      
Sbjct: 226 SATMPADVLDVTKSFMRNPVRILVKKEELTLEGIKQFFVYVEREDWKLETLCDLYDTLSI 285

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
             A++FC+TR  V   T+ + +  F V A+ G++ Q+ER   ++  R G +RV I TD+ 
Sbjct: 286 TQAVIFCNTRRKVDWLTENMHKRDFTVSAMHGDMEQRERDVIMRQFRTGSSRVLITTDLL 345

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+  + LVI+ +L SN EN +HR GR GR GRKG+++  + +  +R  + + +  N
Sbjct: 346 ARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFVTEEDKRTLKDIEQFYN 405

Query: 365 VSVVWEPAPSVEAI 378
             +   P    + I
Sbjct: 406 TKIDEMPMNVADLI 419


>gi|149631935|ref|XP_001509692.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 859

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 107/402 (26%), Positives = 188/402 (46%), Gaps = 10/402 (2%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +  +
Sbjct: 68  FSDFPLSKKTLKGLQEAQYRMVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLES 127

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +   ++       L I+PTRELA Q    L  +         + IGG  + +E   +
Sbjct: 128 LYRQQ--WTSMDGLGVLIISPTRELAYQTFEVLRKVGKNHEFSAGLIIGGKDLKQESERI 185

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L         + S+L+ +VLDEAD +LD+GF D +  I+++ P+KR+
Sbjct: 186 NQINILICTPGRLLQHMDETTYFHASNLQMLVLDEADRILDMGFADTMNAIIENLPRKRQ 245

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + N + + L
Sbjct: 246 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQQKINMLYSFL 305

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGRARV 297
           R H  K +IVF S+   V    +V         ++AL G+  Q +R          ++ V
Sbjct: 306 RSHLKKKSIVFFSSCKEVQYLFRVFCRLRPGLSILALHGKQQQMKRMEVYNDFVRKKSAV 365

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ V+  + ++   
Sbjct: 366 LFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEGGEALLVLLPSEEKGMV 425

Query: 358 RLFREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQ 397
           +   +  V V         +  I++R    + QD    +  Q
Sbjct: 426 QQLTQKKVPVNEIKINPEKLVDIQKRLEAFLAQDQELKERAQ 467


>gi|148222920|ref|NP_001089088.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Xenopus laevis]
 gi|114107928|gb|AAI23292.1| Ddx10 protein [Xenopus laevis]
          Length = 663

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 178/408 (43%), Gaps = 17/408 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +     L E  Y   T +Q+  +   L+ KDVL +A+TGSGKT+AF +     
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +   ++       L I+PTRELA Q    L  +         + IGG  + +E   +
Sbjct: 136 LYRQQ--WTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACI 193

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L         + S+L  +VLDEAD +LD+GF D +  I+++ PKKR+
Sbjct: 194 HRTNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQ 253

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + N + + +
Sbjct: 254 TLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQNYIVCELQQKINLLYSFI 313

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R H  K +IVF S+   V    +        +  L     QQ+             ++ V
Sbjct: 314 RNHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKSAV 373

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR GRT R    G ++ V+  +  +   
Sbjct: 374 LFATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGMA 433

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +   E  V +              + +++L     L++    E+ + +
Sbjct: 434 KQLEEKKVPINEIKI---------NPEKLLDVQGRLEAFLAQEQDLKE 472


>gi|124506009|ref|XP_001351602.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|23504529|emb|CAD51409.1| ATP-dependent helicase, putative [Plasmodium falciparum 3D7]
 gi|156072126|gb|ABU45414.1| DEAD-box helicase 5 [Plasmodium falciparum]
          Length = 755

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 135/597 (22%), Positives = 244/597 (40%), Gaps = 90/597 (15%)

Query: 4   FENIPQV---IGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           F ++ ++   I E L  ++G   +T +Q     P    KD++  ++TGSGKT+AF L L 
Sbjct: 143 FSDLSEINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLV 202

Query: 60  STLLA---ENDRFSPASA-------------------------------------PLALA 79
             L      N++F   +                                      P  L 
Sbjct: 203 EKLYKMKTSNEKFEEENGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILV 262

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           + PTREL+ QV    + +       +    GG S   +   L+ G  I+ GTPGR+ DHI
Sbjct: 263 LEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHI 322

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFI--LDSSPKKRRMLMFSATISPAITTLA 197
             K L++ ++K VVLDEADEML+LGF  DIE I    +  + + +L  + T S      +
Sbjct: 323 EKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILSNINLKEAQVLLYSATTPSWIKDISS 382

Query: 198 KNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTR 254
           K  +       + S N+   +I + A+      ++ A++              I+F  T+
Sbjct: 383 KYLKNPFCIDVVDSSNKTAKNIKHIAIKTPYDIKEKALLLEDIILVKSNGGQVIIFTRTK 442

Query: 255 ASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLE 314
                     +        L G ++Q  R   +Q  R G  ++ IATD+A+RG+D+ +++
Sbjct: 443 LEADILCSEGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVD 502

Query: 315 LVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374
           LVI     +     +HR+GRTGRA +KG S+ +     ++   ++ +   +    E  P+
Sbjct: 503 LVIQCFPPNYSAVYIHRAGRTGRANKKGTSLVLYSNEDKQDLIKIEKNCGIKFNMETLPN 562

Query: 375 VE-------AIRERDAQRILQD--PLFLDSIQGDEKKMVDVLLAKHDPEKIAAGFLRIHR 425
            E       AI  +  + + ++  P F D+ +    K   +   K D  ++ +  L I  
Sbjct: 563 NEQVFHCASAIASKKVENVNKEILPFFHDTAKELINKSNSL---KIDQIELISRCLAI-- 617

Query: 426 AGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK--QKAEARW 483
             +   E I   SL++G                     +  +   ++   K   +A+  +
Sbjct: 618 --IAKKEHIKKRSLING-------------------LSETVTLNFINKNRKWSSEADIVY 656

Query: 484 LMPMLCRSSGINR-QSIGAIRVQPDL---TFVEVSADGVDLLRRTVKLDKGIQLKYL 536
            +  L     +N    I  I++       +F +++ +  +L  +  K    I+ + +
Sbjct: 657 WVNKLSNELNVNTFNKILQIKIDNKDRASSFFDINENLAELFLQNFKTMSKIEYRKM 713


>gi|50290649|ref|XP_447757.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74609416|sp|Q6FPT7|DBP4_CANGA RecName: Full=ATP-dependent RNA helicase DBP4
 gi|49527068|emb|CAG60704.1| unnamed protein product [Candida glabrata]
          Length = 765

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 174/365 (47%), Gaps = 10/365 (2%)

Query: 3   IFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            F+++P  +   + L+E  ++ +T +Q   +   L+  DV  +A+TGSGKT+AF + +  
Sbjct: 42  FFKDLPISKSTLKGLNEASFIKMTDIQRDSIVTSLQGHDVFGTAKTGSGKTLAFLVPVLE 101

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            L  E  R++      AL I+PTRELA+Q+   L  + + T     + IGG  V+ E   
Sbjct: 102 KLYRE--RWTEFDGLGALIISPTRELAMQIYEVLVKIGSHTQFSAGLVIGGKDVNFELER 159

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           +     ++      L    +  GLN S+L+ +VLDEAD  LD+GF+  ++ I+ + P  R
Sbjct: 160 IAKINILIGTPGRILQHMDQAVGLNTSNLQMLVLDEADRCLDMGFQKTLDAIVGNLPPDR 219

Query: 181 RMLMFSATISPAI----TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           + L+FSAT S +I         +Y+K     +          +    ++  L+D+ + + 
Sbjct: 220 QTLLFSATQSQSISDLARLSLTDYKKIGTIDSSEDGPATPKTLQQSYIIADLADKLDVLY 279

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL--QMMRDGR 294
           + ++ H     IVF S+   V    +   +    +  L     Q++R+           +
Sbjct: 280 SFIKSHLKTKMIVFFSSSKQVHFVYETFRKMQPGISLLHLHGRQKQRARTETLDKFFRAQ 339

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
                ATDV ARGID P ++ VI  +   + +  +HR GR  R G+KG S+ ++    + 
Sbjct: 340 QVCLFATDVVARGIDFPAVDWVIQVDCPEDVDTYIHRVGRAARYGKKGRSLIILTPQEEA 399

Query: 355 RAERL 359
              R+
Sbjct: 400 FLTRM 404


>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
          Length = 836

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 14/438 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+   GY   T +Q   L   L  KDV+  A+TGSGK+ AF + L   L   +
Sbjct: 33  LSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEKLKEHS 92

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            R         L +APTRELA+Q  +  + L   T + V++ +GG  + ++   L +   
Sbjct: 93  TRV----GLRGLVLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSALASNPD 148

Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           I+V TPGRL  H++     N+  ++ VV DEAD + ++GF D +  IL   P  R+ L+F
Sbjct: 149 ILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPPNRQTLLF 208

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT+   +   A+    +   + +  EN+   ++      V   D+    V+++R    K
Sbjct: 209 SATLPSVLAQFARAGLNEPAMIRLDVENKMSENLKMAFFTVRSDDKPAVFVHLVRDFLPK 268

Query: 246 --NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
               I+F +TR  V    ++L  +  +   + GE+ Q  R   +   R G+  + + TDV
Sbjct: 269 NDQTIIFTATRHHVEFLHQLLIANDIESSCVYGEMDQTSRKLNIAKFRAGKTNLLLVTDV 328

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
           AARGID+P L  VI+       +  +HR GR  RAG+ G +  ++          L    
Sbjct: 329 AARGIDIPLLNNVINYSFPPTAKLFVHRVGRAARAGKSGTAFSLLDPTEYPFLVDLHLYI 388

Query: 364 NVSVVWEPAPSVE--AIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDP----EKIA 417
              +      + +  A+ E   + I     F   I   E + +  LL  H       K+ 
Sbjct: 389 GRRLEDSSPVNSKPYALEEMQVENI-HYGAFPSEITDRENEQIQDLLKHHPVVSPLVKVC 447

Query: 418 AGFLRIHRAGLCAPEEIT 435
           A   ++++     P +++
Sbjct: 448 ANASKLYQRTRADPSKLS 465


>gi|119611725|gb|EAW91319.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 59, isoform CRA_b [Homo
           sapiens]
          Length = 562

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 103/364 (28%), Positives = 179/364 (49%), Gaps = 12/364 (3%)

Query: 4   FEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE+  +P+V+   L + GY   T +Q  ++   L  +D+L SA TGSGKT AF L +   
Sbjct: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVSVHRERRD 120
            L E      +  P AL + PTRELA+Q+ R+ +  +     +   + +GG+ +  +   
Sbjct: 265 ALFE------SKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYR 318

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           LQ    +++ TPGRL D I+   + +  +K VV+DEAD ML +GF+  +  IL++ P   
Sbjct: 319 LQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDC 378

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY---RAVLVALSDRDNAIVN 237
           + ++ SATI  +I  LA     + VR+    +N   +++          A   +   I+N
Sbjct: 379 QTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILN 438

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
             +       +       +      V      + +++  E SQ ER N L+ + +G   V
Sbjct: 439 DKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEV 498

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            ++T V  RG+DL  + LV++ ++ S+ +  +H+ GR GR G+ G ++  I  N ++   
Sbjct: 499 VVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKKEKG 558

Query: 358 RLFR 361
              R
Sbjct: 559 TTER 562


>gi|294658297|ref|XP_460627.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
 gi|91208173|sp|Q6BME5|SUB2_DEBHA RecName: Full=ATP-dependent RNA helicase SUB2
 gi|202953024|emb|CAG88955.2| DEHA2F06138p [Debaryomyces hansenii]
          Length = 435

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 180/377 (47%), Gaps = 13/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   DVL  A++G GKT  F L+    L    
Sbjct: 58  LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 117

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQ 122
              S       L I  TRELA Q+  E          V      G +         ++  
Sbjct: 118 GEIS------TLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPITRDLEKLKNKD 171

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +  K + ++++K+ V+DE D++L+ +  R D++ I  ++P +++
Sbjct: 172 TCPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLEAVDMRRDVQDIFRNTPHQKQ 231

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +       +  +     +++  + ++L 
Sbjct: 232 VMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKEKNRKLSDLLD 291

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L    F  +A+   L Q+ER    +  ++   R+C++
Sbjct: 292 SLEFNQVIIFVRSTQRANELNKLLCSSNFPSIAVHSGLPQEERIERYKSFKEFNKRICVS 351

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDV  RGID+  + L I+ +L +  +  LHR GR GR G KG++V ++  ++ +   E++
Sbjct: 352 TDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKI 411

Query: 360 FREANVSVVWEPAPSVE 376
               +V +   P   V+
Sbjct: 412 QSRFDVKITEFPEEGVD 428


>gi|224080444|ref|XP_002190335.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Taeniopygia
           guttata]
          Length = 503

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 162/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 115 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 174

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 175 AMLSRVEPGN------KYPQCLCLSPTYELALQTGKVIEQMGNFYPELKLAYAVRGNKLE 228

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 229 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 288

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 289 PRDCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFRAL 348

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        A++FC TR +       L+    QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 349 CNIYGAITIAQAMIFCHTRKTAGWLAAELSREGHQVALLSGEMMVEQRAAVIERFREGKE 408

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G+++ ++ 
Sbjct: 409 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAINMVD 468

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 469 SKHSMNILNRIQEHFNKKINKLDTDDLDEIEK 500


>gi|256083212|ref|XP_002577843.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
 gi|238663176|emb|CAZ34081.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
          Length = 794

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 119/394 (30%), Positives = 184/394 (46%), Gaps = 15/394 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI E L  R    L  VQ    +     +D +V A+TG+GKT+AF L L ++L+  
Sbjct: 186 NIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVNSLI-- 243

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S  S+P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+ G 
Sbjct: 244 KGQGSRPSSPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPYRPQCDALRQGT 302

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HIVVG PGR+ D +    L +S ++ VVLDE D MLD+GF  D+E IL            
Sbjct: 303 HIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVESILSKIYNSENSEKP 362

Query: 186 --------SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD---NA 234
                     +    I+    +     + +    E +  +++ + A+L     R    + 
Sbjct: 363 QTLLFSATMPSWVSEISRCYLSDDALHLSLIDEQETKTSTNVTHLALLCPYESRAATLSD 422

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
           ++ +         IVFC  +      +   A      V   G + Q +R   LQ  RDG+
Sbjct: 423 VIKVYCKGRESRCIVFCERKKDADELSASDAMSGDCHVLH-GSVPQDKRELVLQRFRDGK 481

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
            R  + T+VAARG+D+P+++LVI      + E+ +HRSGRTGRA R G S+       + 
Sbjct: 482 YRTLLTTNVAARGLDVPNVDLVIQCHPPRDIEDYIHRSGRTGRADRSGTSICFYTYKERS 541

Query: 355 RAERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
              R+   A ++     AP++  I     + IL+
Sbjct: 542 MLSRIENMAGITFRRISAPTINDITTAWGEEILK 575



 Score = 83.5 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 66/165 (40%), Positives = 92/165 (55%), Gaps = 3/165 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI  VI E L  R    L  VQ    +     +D +V A+TG+GKT+AF L L ++L+  
Sbjct: 15  NIADVIIEKLRARNISELFPVQFKTYDIISSGRDAVVLARTGTGKTLAFSLPLVNSLI-- 72

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             + S  S+P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+ G 
Sbjct: 73  KGQGSRPSSPVVLVLAPTRELVTQIATDFESIS-VHGIKVTSVYGGVPYRPQCDALRQGT 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE 170
           HIVVG PGR+ D +    L +S ++ VVLDE D MLD+GF  D+E
Sbjct: 132 HIVVGAPGRVIDLMEKGVLKLSSVRHVVLDEVDRMLDMGFSKDVE 176


>gi|114640235|ref|XP_001141618.1| PREDICTED: probable ATP-dependent RNA helicase DDX10 [Pan
           troglodytes]
          Length = 875

 Score =  163 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 11/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + + L+ +VLDEAD +LD+GF D +  ++++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELKQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V         ++AL G   Q  R          R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ ++  + + 
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKA 425

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHD 412
             ++L ++  V V      P      ++  + IL QD    +  Q      V  +    D
Sbjct: 426 MVQQLLQK-KVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484

Query: 413 PE 414
            E
Sbjct: 485 KE 486


>gi|302698637|ref|XP_003038997.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
 gi|300112694|gb|EFJ04095.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
          Length = 437

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 173/373 (46%), Gaps = 15/373 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++S+ G+ + + VQ+  +   +   DVL  A++G GKT  F LA    L    
Sbjct: 61  LKPELLRSISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQL---- 116

Query: 67  DRFSPASAPLALAI-APTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRDL 121
               P    +A+ +   TRELA Q+  E          +                  RD 
Sbjct: 117 ---EPVDGEVAVIVLCHTRELAFQIRNEYTRFAKYMPQIRVSTFYGGTPVSKDAEILRDK 173

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKR 180
               HI+V TPGRL   +R K L+  H+K  VLDE D+ML+    R D++ I  ++P  +
Sbjct: 174 NACPHIIVATPGRLNALVRDKVLDAKHVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHK 233

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNIL 239
           +++MFSAT++  I    K +  + + + +  E +     +    V +  + ++  + ++L
Sbjct: 234 QVMMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAQKNRKLNDLL 293

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
                   ++F  + A      K+L    F  +++   L Q+ER N  Q  ++   R+ +
Sbjct: 294 DTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERINRYQAFKNFEKRILV 353

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN-MQRRAER 358
           ATD+  RGID+  + +VI+ +   + ++ LHR GR GR G KG+++  +  +  Q+    
Sbjct: 354 ATDIFGRGIDVERVNIVINYDAPPDADSYLHRVGRAGRFGTKGLAITFVSSDADQQVMAA 413

Query: 359 LFREANVSVVWEP 371
           +     V+V   P
Sbjct: 414 IQSRFEVAVPELP 426


>gi|167386672|ref|XP_001737862.1| ATP-dependent RNA helicase DDX50 [Entamoeba dispar SAW760]
 gi|165899191|gb|EDR25838.1| ATP-dependent RNA helicase DDX50, putative [Entamoeba dispar
           SAW760]
          Length = 689

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 134/591 (22%), Positives = 239/591 (40%), Gaps = 51/591 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           + +   E L +RG  +L  +Q +  +P    KDV+  AQTGSGKT++F L L   L AEN
Sbjct: 74  VSESAQEMLKKRGINSLFPIQVSTYSPIYYRKDVVGKAQTGSGKTISFTLPLMERLRAEN 133

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           +R      P  + ++PTRELA+Q+  E          V+ V  G     +  + LQ+G  
Sbjct: 134 ER--KGKNPRVICLSPTRELAIQIAEEFTQCSCGKFKVICVYGGVDIQGQINK-LQSGVD 190

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           ++VGTPGR+ D    + L +  ++ +VLDEADEML++GF++++  I+D            
Sbjct: 191 VIVGTPGRVRDLFDRQFLKLDSIETIVLDEADEMLNIGFKEEVTQIMDFVHGSVPKESTV 250

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK- 245
            T+  + T  A   +     +   +E    +  + +    A                A  
Sbjct: 251 QTLLFSATMPAWVKEISEKYLRDDAEVIDVTVGNTQVPKNAKHLACRIFYQSKTQTIADL 310

Query: 246 --------NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
                     IVFC T+A  +     +         L G++ Q++R   L   R+ +  V
Sbjct: 311 IRVYGRTGRTIVFCDTKAECTDCAIAINPIFECQ-QLHGDIQQKQREQTLNGFRENKFNV 369

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATDVAARG+D+  ++L+I   +  +    +HR+GRT RAG++G ++ +  +    + +
Sbjct: 370 LVATDVAARGLDISGVDLIIMTHVPKDIPQYVHRAGRTARAGKEGTTITLFTRKELPQLQ 429

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFL-DSIQGDEKKMVDVLLAKHDPEKI 416
            +     +       P    I E     + ++   + D+     + +   LL   D E +
Sbjct: 430 LIENRIKIHFQRIGTPQKAQIAEVTCGNLPEEIKEVPDATAELFRDISKKLLETGDAETV 489

Query: 417 AAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSK 476
                ++  +      + +  SL+ G    +     F    G+   F G+ +    +G  
Sbjct: 490 ---LCKVIASLSTVSNDDSDRSLLQGEPGVKT---LFMETKGTTTGFSGTKFL---LGKT 540

Query: 477 QKAEARWLMPMLCRSSGINRQSIGAIRVQ-PDLTFVEVSADGVDLLRRTV-KLDKGI--- 531
              +   +              +G + V      F ++     + L ++  K  K I   
Sbjct: 541 --LDPSEI------------DKLGEVYVYKDHFVFFDLPTKIANKLLKSKSKWSKAIVNI 586

Query: 532 --------QLKYLGGEKP-DFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
                    +     + P + RG K SG   K+  D       R  G  + 
Sbjct: 587 TVPAYFPDDVGIGNSKDPNEERGRKDSGSLRKDGGDRKGYGNDRRDGGDRK 637


>gi|324505355|gb|ADY42303.1| ATP-dependent RNA helicase DDX23 [Ascaris suum]
          Length = 515

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/382 (29%), Positives = 182/382 (47%), Gaps = 29/382 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA---STLL 63
           +P  + + + + GY   T +Q   +   L+ +D++  A+TGSGKT AF + L    ++L 
Sbjct: 92  LPSEVLDVIIKIGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITSLP 151

Query: 64  AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
                    S P A+ +APTRELA Q+  E        G+     IGG S   +   L+ 
Sbjct: 152 KIQSNEDQDSGPYAIIMAPTRELAQQIEEETVKFGQLLGIRTVSVIGGASREEQGLKLRL 211

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP------ 177
           G  +V+ TPGRL D +  + L++     V+LDEAD MLD+GF  +++ +L+  P      
Sbjct: 212 GVEVVIATPGRLLDVLENRYLSLDQCTYVILDEADRMLDMGFEPEVQKVLEYIPVTNLKP 271

Query: 178 -------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD 218
                              K R+ +MF+AT+SPAI  LA+ Y +    V I S  R    
Sbjct: 272 DTEEAEKEESIMENFYSKKKYRQTVMFTATMSPAIERLARAYLRRPAVVYIGSVGRPTER 331

Query: 219 IDYRAVLVALSDRDNAIVNI-LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
           ++    ++    +   +V +          I+F + +       K L +  F    L G 
Sbjct: 332 VEQIVYMIGEERKRKKLVELLSSEAFEPPIIIFVNQKKGADMLAKGLTKLGFAPCVLHGG 391

Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
             Q  R  +L  ++DG   + +ATDVA RGID+ D+ LV++ +++ + E+  HR GRTGR
Sbjct: 392 KGQDAREYSLAALKDGSKDILVATDVAGRGIDIKDVSLVLNYDMAKSIEDYTHRIGRTGR 451

Query: 338 AGRKGMSVFVIPQNMQRRAERL 359
           AG+ G ++  +    +     L
Sbjct: 452 AGKHGKAITFLTPEDKDVFYDL 473


>gi|126305162|ref|XP_001375627.1| PREDICTED: similar to DEAD Box Protein 5 [Monodelphis domestica]
          Length = 535

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 163/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 147 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 206

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 207 AMLSQVEPLN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 260

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 261 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 320

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 321 PKDCQMLLFSATFEDSVWRFAQKVVPDPNIIKLKREEETLDTIKQYYVMCNNRDEKFQAL 380

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR +       L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 381 CNLYGAITIAQAMIFCHTRKTAGWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 440

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 441 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 500

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 501 SKHSMNILNRIQEHFNKKIDRLDTDDLDEIEK 532


>gi|126135590|ref|XP_001384319.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
           [Scheffersomyces stipitis CBS 6054]
 gi|146325738|sp|A3LST5|SUB2_PICST RecName: Full=ATP-dependent RNA helicase SUB2
 gi|126091517|gb|ABN66290.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
           [Scheffersomyces stipitis CBS 6054]
          Length = 433

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 179/377 (47%), Gaps = 13/377 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ+  +   +   DVL  A++G GKT  F L+    L    
Sbjct: 56  LKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVP 115

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQ 122
              S       L I  TRELA Q+  E          V      G +  +      +   
Sbjct: 116 GEIS------TLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKD 169

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPKKRR 181
              HIVV TPGRL   +  K + +S++K+ V+DE D++L+ +  R D++ I  ++P +++
Sbjct: 170 TCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDMRRDVQDIFRATPHQKQ 229

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILR 240
           ++MFSAT+S  I  + K + ++ + + +  E +       +  +     +++  + ++L 
Sbjct: 230 VMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLD 289

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F  +    +   K+L    F  +A+   L Q+ER    +  ++   R+C++
Sbjct: 290 SLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVS 349

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERL 359
           TDV  RGID+  + L I+ +L +  +  LHR GR GR G KG+++ ++  +  +   E++
Sbjct: 350 TDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKI 409

Query: 360 FREANVSVVWEPAPSVE 376
               +V +   P   V+
Sbjct: 410 QSRFDVKITEFPEEGVD 426


>gi|237843843|ref|XP_002371219.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
 gi|211968883|gb|EEB04079.1| DEAD-box ATP-dependent RNA helicase, putative [Toxoplasma gondii
            ME49]
          Length = 1158

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 183/379 (48%), Gaps = 27/379 (7%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 744  LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 803

Query: 65   ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 804  PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 863

Query: 125  AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
            A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 864  AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 923

Query: 179  ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                               R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 924  DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 983

Query: 221  YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             R   V  + +    +  +  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 984  QRVEFVPEARK-KQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 1042

Query: 281  QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 1043 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 1102

Query: 341  KGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 1103 KGLAISFLTEEDSGIFYDL 1121


>gi|148726561|emb|CAN88468.1| novel protein similar to vertebrate eukaryotic translation
           initiation factor 4A, isoform 2 (EIF4A2, zgc:63783)
           [Danio rerio]
          Length = 382

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/375 (29%), Positives = 186/375 (49%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   L  E
Sbjct: 14  NLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE 73

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                      AL +APTRELA Q+ + +  L    G    A   G    +  ++     
Sbjct: 74  QKE------TQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQAEA 127

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HIVVGTPGR+ D +  + L+   +K  VLDEADEML  GF+D I  I        ++++
Sbjct: 128 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 187

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  +   + ++ VR+ +  E      I      +     + + + ++     
Sbjct: 188 LSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLT 247

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V AL G++ Q+ER   ++  R G +RV I TD+
Sbjct: 248 ITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLITTDL 307

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++  + +  +R    +    
Sbjct: 308 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFY 367

Query: 364 NVSVVWEPAPSVEAI 378
           N +V   P    + I
Sbjct: 368 NTTVEEMPMNVADLI 382


>gi|66911756|gb|AAH97636.1| Ddx10 protein [Xenopus laevis]
          Length = 717

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 102/408 (25%), Positives = 178/408 (43%), Gaps = 17/408 (4%)

Query: 4   FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           F + P  +     L E  Y   T +Q+  +   L+ KDVL +A+TGSGKT+AF +     
Sbjct: 76  FSDFPLSKKTLRGLVEAQYRLPTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFIIPALEC 135

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
           L  +   ++       L I+PTRELA Q    L  +         + IGG  + +E   +
Sbjct: 136 LYRQQ--WTSDDGLGVLIISPTRELAYQTFEVLRKVGRNHEFSAGLVIGGKDLKQETACI 193

Query: 122 QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
                ++      L         + S+L  +VLDEAD +LD+GF D +  I+++ PKKR+
Sbjct: 194 HRTNILICTPGRLLQHMDETSFFHASNLHMLVLDEADRILDMGFADTMNAIIENLPKKRQ 253

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIVNIL 239
            L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + N + + +
Sbjct: 254 TLLFSATQTKSVKDLARLSLKDPAYVWVHEKAKFSTPATLEQNYIVCELQQKINLLYSFI 313

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGRARV 297
           R H  K +IVF S+   V    +        +  L     QQ+             ++ V
Sbjct: 314 RNHLKKKSIVFFSSCKEVQYLFRAFCRLRPGIPVLVLHGKQQQTKRMEVYNDFIRKKSAV 373

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
             ATD+AARG+D P +  V+  +   +    +HR GRT R    G ++ V+  +  +   
Sbjct: 374 LFATDIAARGLDFPAVSWVLQLDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEVKGMA 433

Query: 358 RLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD 405
           +   E  V +              + +++L     L++    E+ + +
Sbjct: 434 KQLEEKKVPINEIKI---------NPEKLLDVQGRLEAFLAQEQDLKE 472


>gi|315037650|ref|YP_004031218.1| RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325956135|ref|YP_004286745.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|312275783|gb|ADQ58423.1| putative RNA helicase [Lactobacillus amylovorus GRL 1112]
 gi|325332700|gb|ADZ06608.1| RNA helicase [Lactobacillus acidophilus 30SC]
 gi|327182943|gb|AEA31390.1| RNA helicase [Lactobacillus amylovorus GRL 1118]
          Length = 453

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 188/386 (48%), Gaps = 12/386 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IFE+  I   +   L +  +   T VQE ++   L +  V+V A TGSGKT A+ + + 
Sbjct: 3   NIFEDSRIKPAVQAGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHR 116
           + +         A    A+   P+RELA Q+ +    L   +G+  ++     G     +
Sbjct: 63  NEID------EAAHTVQAIITLPSRELADQLYQVARELRKASGMNFSIAHLAGGTDRERQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   N   +V+ TPGRL D ++ K   +  +K  V+DEAD  LD+GF  DI+ +    
Sbjct: 117 LEKYQNNTPQLVIATPGRLLDFVQKKVFAVDQVKTFVIDEADMTLDMGFLADIDQVAAKL 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  ++  FSATI   ++   + Y     ++ I + +     I    + +   +R + + 
Sbjct: 177 PKDVQIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSVIAPTIKNDLIDIGSKNRKSVLY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   TK L +   +V  + G ++++ER   L+ +  G+ +
Sbjct: 237 KLLTMGQPYLALVFANTKQTVDELTKYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQYQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARG+D+  + LVI+ E+  + E ++HR GRTGR G  G ++ +I +    R 
Sbjct: 297 YVVASDLAARGLDIDGISLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   V   +    + E +  + 
Sbjct: 357 EELEK-MGVHFDFVEIKNGELVPRKH 381


>gi|254818841|ref|ZP_05223842.1| ATP-dependent RNA helicase [Mycobacterium intracellulare ATCC
           13950]
          Length = 454

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 131/373 (35%), Positives = 192/373 (51%), Gaps = 6/373 (1%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           K F ++   + I  AL+ RG  +   +Q   L   L  +DVL   +TGSGKT+AF + L 
Sbjct: 5   KTFADLGVGKHIVSALAARGITHPFPIQVETLPDTLAGRDVLGRGKTGSGKTLAFSIPLV 64

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
           S L   N R +  S    L +APTRELA Q+   LE L A  G+ V    GGVS  R+  
Sbjct: 65  SRLSRGNRRPARPSG---LVLAPTRELATQITATLEPLAAACGLRVTTIFGGVSQTRQVA 121

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
            L++G  IVV  PGRL D ++ + +++  ++  V+DEAD M DLGF   +  IL ++P  
Sbjct: 122 ALKSGVDIVVACPGRLEDLMKQRLISLDAIEITVIDEADHMADLGFLPGVTRILAATPNG 181

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            + L+FSAT+   +  L   + +DAV  ++   N   S++ +       S +    +   
Sbjct: 182 GQRLLFSATLDNGVDKLVTRFLRDAVSHSVDEANSPVSEMTHHV-FHVDSAQAKKELVHR 240

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
              GA   I+F  T+    +  K L E     V L G LSQ  R   L     G ARV +
Sbjct: 241 LASGAGRRILFMRTKHQARKLAKQLTESGIPSVDLHGNLSQPARERNLARFAAGSARVLV 300

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ATD+AARG+ + ++ELV+H +  S  ++ LHRSGRT RAG  G  V V+    ++    L
Sbjct: 301 ATDIAARGVHVDEVELVVHIDPPSEHKSYLHRSGRTARAGSAGDVVTVVLPEQRQDTREL 360

Query: 360 FREANVSVVWEPA 372
            R+A + V  +  
Sbjct: 361 LRKAGIKVAPQQV 373


>gi|221481559|gb|EEE19941.1| DEAD-box helicase family protein [Toxoplasma gondii GT1]
          Length = 1158

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/379 (30%), Positives = 183/379 (48%), Gaps = 27/379 (7%)

Query: 7    IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
            +P  + EA+    Y   T +Q   +   L ++D++  A+TGSGKT AF L + + +  L 
Sbjct: 744  LPWELIEAVKHANYDRPTPIQMQAIPIALEQRDLIGIAETGSGKTAAFVLPMLTYVKGLP 803

Query: 65   ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
              +  +    P AL +AP+RELA+Q+  E +   +         +GG S   +   L+ G
Sbjct: 804  PLNEDTGQDGPYALILAPSRELALQIDEETQKFASFCKCQTVAVVGGRSAETQAFQLRRG 863

Query: 125  AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK------ 178
            A IV+GTPGR+ D +      ++    VVLDEAD M+D+GF + + FILD  P       
Sbjct: 864  AEIVIGTPGRVKDCLEKAYTVLNQCNYVVLDEADRMIDMGFEEIVNFILDQIPTSNLKSN 923

Query: 179  ------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID 220
                               R   MFSAT+ PA+  LA+ Y +    ++I         I+
Sbjct: 924  DEALILQQEMQAKAGHRLYRLTQMFSATMPPAVERLARKYLRQPSYISIGDPGAGKRAIE 983

Query: 221  YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
             R   V  + +    +  +  +     +VF + + S     KVL +  +   +L G  +Q
Sbjct: 984  QRVEFVPEARK-KQRLQDVLENATPPVMVFVNQKKSADALAKVLGKLGYSACSLHGGKAQ 1042

Query: 281  QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            + R  AL   ++G   V +ATDVA RGID+  ++LV++ ++  + E   HR GRTGRAGR
Sbjct: 1043 ENREAALSSFKEGSHDVLVATDVAGRGIDVEGVQLVVNFDMPKDIEAYTHRIGRTGRAGR 1102

Query: 341  KGMSVFVIPQNMQRRAERL 359
            KG+++  + +        L
Sbjct: 1103 KGLAISFLTEEDSGIFYDL 1121


>gi|291390469|ref|XP_002711765.1| PREDICTED: DEAD (Asp-Glu-Ala-As) box polypeptide 19 [Oryctolagus
           cuniculus]
          Length = 484

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 96  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 155

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 156 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGRFYPELKLAYAVRGNKLE 209

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 210 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 269

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 270 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNRDEKFQAL 329

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 330 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKE 389

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 390 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 449

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 450 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 481


>gi|153839306|ref|ZP_01991973.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
 gi|149747170|gb|EDM58158.1| ATP-dependent rna helicase, dead box family [Vibrio
           parahaemolyticus AQ3810]
          Length = 412

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 121/411 (29%), Positives = 190/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTDIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA+QV   +  +     +      GGV   ++   L    
Sbjct: 66  PEQ-------KALILVPTRELAMQVSEAINQVGQALDLNTVCLCGGVDKEQQHHALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I      +R+  MF
Sbjct: 119 HILVATTGRLVDLANNGL-DLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK   +   +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKAKLLMQAPKQVAAHQENSTNQDIAETLHLVNKGSKTKALIELIQKNAWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +      AL G  SQ ER  AL   + G+ +V IATD+ A
Sbjct: 238 QVLVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAERLFRE 362
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++             L + 
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAIRHLTQR 357

Query: 363 A-------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           A          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ALPVQDLVGFPVTDKPSTGESKRAPRDKKANRRTHAKKSIKQFQGKSKRPA 408


>gi|145234506|ref|XP_001400624.1| ATP-dependent RNA helicase dbp3 [Aspergillus niger CBS 513.88]
 gi|134034068|sp|A2QFL3|DBP3_ASPNC RecName: Full=ATP-dependent RNA helicase dbp3
 gi|134057571|emb|CAK37981.1| unnamed protein product [Aspergillus niger]
          Length = 495

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/398 (28%), Positives = 193/398 (48%), Gaps = 20/398 (5%)

Query: 1   MKIFENIP---QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA 57
           +  F ++P     +   L    + + T++Q A        +DV+  A+TGSGKT+ FGL 
Sbjct: 78  ITSFSHLPTCNSALYRPLES--FTSPTAIQSATWPFLFSGRDVIGIAETGSGKTLGFGLP 135

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
               L     +  P   P A+ I+PTRELA+Q+  ++        + VA   GGV    E
Sbjct: 136 CLKNLQDSAKKGKPYK-PTAVMISPTRELAMQIHDQISKFAELVDIKVACIFGGV-KKEE 193

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
           +R+    A IVV TPGRL D      +++  +K +VLDEAD MLD GF  DI+ I+   P
Sbjct: 194 QREALKTAAIVVATPGRLKDLQNDGSVDLGKVKYLVLDEADRMLDKGFEQDIKDIIRPMP 253

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRV-----NIASENRQHSDIDYRAVLVALSDRD 232
             +R  +      P +          +          +++ R ++ I     +V   +++
Sbjct: 254 VSKRQTVMFTATWPPVVRDLAATFMTSPVTVTIGGEPSADPRANTRIKQVVEVVKPHEKE 313

Query: 233 NAIVNILRYHG-----AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNAL 287
             +V +L  +      +   +VFC  +    R  ++L    F+V  + G+L QQER  +L
Sbjct: 314 QRLVQLLNKYQKGPSSSDKILVFCLYKKEAVRVERLLWNKGFKVAGIHGDLGQQERFKSL 373

Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
           +  + G + V +ATDVAARG+D+P ++LVI+       E+ +HR GRTGRAG +G ++ +
Sbjct: 374 ESFKKGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITL 433

Query: 348 IPQNMQRRAERL---FREANVSVVWEPAPSVEAIRERD 382
             +  + ++  L    + AN  V  +       ++++ 
Sbjct: 434 FTEVDKAQSGALINVLKAANQDVPEDLLKFGATVKKKQ 471


>gi|77360375|ref|YP_339950.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 440

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/395 (26%), Positives = 184/395 (46%), Gaps = 5/395 (1%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N    VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPQFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM---LMFSATISP 191
           L DH+  + L +S L+ ++ DEAD +LDLGF + ++ I D +  + R       +   + 
Sbjct: 134 LADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADHRLRQTLLFSATLDHAQ 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                    +K    +  A+  +         +   L  ++  + + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQSLYLADHLDHKEALLEHFLNQDDVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+   L+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSEALCAKGFKAQPLAGDLAQNKRLDIMDAFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++          +    N  + ++ 
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGSALSLVGPKDWPSYLAIKAFLNDELKFDS 373

Query: 372 APSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
              ++A  +   ++     L  +     +K +   
Sbjct: 374 VDGLKAKFKGIKEKKPVAVLATEKTVAAKKPVFKR 408


>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
           jacchus]
          Length = 471

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 159/355 (44%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKAAVLLHLLRNVVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSALIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDL 453


>gi|242046786|ref|XP_002461139.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
 gi|241924516|gb|EER97660.1| hypothetical protein SORBIDRAFT_02g041390 [Sorghum bicolor]
          Length = 546

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 24/404 (5%)

Query: 1   MKIFENI------PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAF 54
           ++ FE +         +   LS+ G+   T +Q   +   L  ++    A TGSGKT+AF
Sbjct: 147 LESFEELISRYGCDSYLVGNLSKLGFQEPTPIQRQAMPILLSGRECFACAPTGSGKTLAF 206

Query: 55  GLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSV 114
              L   +     +        A+ + PTRELA Q  RE + L       + +    +S 
Sbjct: 207 LFPLLMKI-----KPGSKGGVKAVILCPTRELAAQTVRECKKLIKGRKYYIKLMTKELSK 261

Query: 115 HRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIE-FIL 173
               +D+     I+V TP RL   ++ + L++S ++ +VLDE+D++ +LGF + ++  + 
Sbjct: 262 SGNFKDM--HCDILVSTPLRLDHAVKKRDLDLSSVEYLVLDESDKLFELGFVEVVDSVVE 319

Query: 174 DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RD 232
             S       +FSAT+  +I  LA+    DA+RV +  +N   S I  + +       + 
Sbjct: 320 ACSNPSIIRSLFSATLPDSIEALARTIMHDAIRVIVGRKNSASSLIKQKLIFAGTERGKL 379

Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
            A+    +       ++F  ++       K LA    +V A+  +L++Q+R +A+  +R 
Sbjct: 380 LALRQSFQESLNPPVLIFVQSKERAKELYKELAFDDVRVDAIHADLNEQQRQDAVDNLRA 439

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+  V IAT+V ARG+D   +  VI+ +   +    +HR GR GRAGR G ++    +  
Sbjct: 440 GKTWVLIATEVIARGMDFKGVNCVINYDFPESAAAYIHRIGRCGRAGRFGEAITFFTEED 499

Query: 353 QRRAERLFRE-----ANVSVVWEPAPSVEAIRERDAQRILQDPL 391
           +     +          V       P +    +R   R+ +DP+
Sbjct: 500 KPFLRNIANVLVSSGCEVPSWIMALPKL----KRKKHRVDRDPI 539


>gi|187934350|ref|YP_001885537.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
 gi|187722503|gb|ACD23724.1| ATP-dependent RNA helicase [Clostridium botulinum B str. Eklund
           17B]
          Length = 382

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 185/368 (50%), Gaps = 9/368 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL ++     T +Q  ++N  L  KD++  + TGSGKT+A+ L +   +  E
Sbjct: 9   NLSSDIINALEKQNITVPTEIQSLVINEALENKDIMGESFTGSGKTLAYLLPIFERINTE 68

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV---AVCIGGVSVHRERRDLQ 122
                      A+ +APT EL +Q+  +++ L   +G+ V    +       ++ ++  +
Sbjct: 69  TKDI------QAIILAPTHELVMQIEAQIKLLSDNSGINVKSLGIIGDVNINNQIKKLKE 122

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
              HI+VG+ GR+ D IR K +    +K +V+DE D +LD      ++ I+ ++ + R++
Sbjct: 123 VKPHIIVGSTGRVLDLIRKKKITAHTIKTIVIDEVDNLLDPKRAQIVKDIIKTTMRDRQL 182

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           + FSA+I+P I        KD + V    ++  + +I +  V     D+   +  I+   
Sbjct: 183 MAFSASITPEIVDSLNELMKDPLIVKSQGKSSINPNISHVYVKCDRRDKFEVLRKIIAAE 242

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
             K A++F +    +   +  L  H  +  A+SG +S++ER NA+   + G+ ++ +++D
Sbjct: 243 DPKRALIFVNDNKDIELTSLKLNYHNRECFAMSGSISKEERKNAIDSFKTGKIKILVSSD 302

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFRE 362
           V+ARG+D+ D+  V + +L    +  LHRSGRT R   KG S+ ++        ++  + 
Sbjct: 303 VSARGLDITDITHVFNLDLPLKLDEYLHRSGRTARGNAKGTSICIVTDKQMNIIKKYEKA 362

Query: 363 ANVSVVWE 370
            +V    +
Sbjct: 363 FDVEFQEK 370


>gi|114647100|ref|XP_001152281.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 5 [Pan
           troglodytes]
          Length = 884

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 601


>gi|314936321|ref|ZP_07843668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
 gi|313654940|gb|EFS18685.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 212/452 (46%), Gaps = 20/452 (4%)

Query: 4   FE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
           FE  N+   + +A+ +  +   T +Q  I+    +  +++  +QTG+GK+ AF L L   
Sbjct: 6   FEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLLPLIDL 65

Query: 62  LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRD 120
           +  +         P ++ +APTRELA Q+ +    L +  + + V++ IGG  + ++++ 
Sbjct: 66  INTD------IKEPQSIVVAPTRELAQQLYKVASHLASFQSDIKVSLFIGGTDIEKDKQR 119

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
                 +V+GTP R+ D  +   L+I     +++DEAD ++DLG  +D+++I     +  
Sbjct: 120 TNQQPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENA 179

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
            + +FSATI  ++      Y      V + ++++   +I++  +    +++ +  + ++ 
Sbjct: 180 NIAVFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPTKGTEKVDKTLQLID 239

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+FC++R + +   + L E   +V  + G L+ +ER   ++ +R+   +  IA
Sbjct: 240 ILNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIA 299

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           +D+A+RGID+  +  V++ ++ ++ +   HR GRTGR   KG+++ +   + +     + 
Sbjct: 300 SDLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNISLIE 359

Query: 361 REA----NVSVVWEPAPSVEAIRERDAQRILQDPL---FLDSIQGDEKKMVDVLLAKHDP 413
            +     NV +       ++A   R  +    D L       ++   K  V +   K   
Sbjct: 360 DKGYHFDNVDIKNGELKPIKAHNTRHKRERKDDHLTNQVKHKVRSKSKNKVKLGYKKKFK 419

Query: 414 EKIAAGFLRIHRAGLCAPEEITPVSLVSGRDR 445
           +++     R+ R       +   +       +
Sbjct: 420 QEV----ERMKRQERKQYSKQRSIQQRKNNKK 447


>gi|226468796|emb|CAX76426.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
 gi|226468798|emb|CAX76427.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 [Schistosoma japonicum]
          Length = 622

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 115/393 (29%), Positives = 172/393 (43%), Gaps = 13/393 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           NI   I + L  R    L  VQ    +     KD +V A+TG+GKT+AF L L + L+  
Sbjct: 15  NIDDAIIKRLHARNIFELFPVQFKTYDAISSGKDAVVLARTGTGKTLAFSLPLVNQLIKR 74

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            + F P  +P+ L +APTREL  Q+  + E +    G+ V    GGV    +   L+NG 
Sbjct: 75  QESFKP--SPVVLVLAPTRELVTQIATDFESIC-VHGIKVTSVYGGVPYKPQCNALRNGT 131

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           H+VVG PGR+ D I    L +S ++ VVLDE D MLD+GF  D+E IL            
Sbjct: 132 HVVVGAPGRVIDLIDKGILKLSSVQHVVLDEVDRMLDMGFSKDVEKILADIYNNETSKKP 191

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
              +  A      +        N A       + + +A                    + 
Sbjct: 192 QTLLFSATMPSWVSDISRNYLSNDALHLSLIDEQETKASTNVTHLALLCPYESRAATLSD 251

Query: 246 NAIVFCSTRASVSRFTKVLAE----------HLFQVVALSGELSQQERSNALQMMRDGRA 295
              V+C +R S         +                 L G++ Q +R   LQ  RDG+ 
Sbjct: 252 VIKVYCKSRESRCIVFCERKKDADELAASSVMPTDCHVLHGDVPQDKREFVLQKFRDGKY 311

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
           R  + T+VAARG+D+P ++LVI      + E+ +HRSGRTGRA R G S+       +  
Sbjct: 312 RTLLTTNVAARGLDVPHVDLVIQCHPPRDVEDYIHRSGRTGRADRSGTSICFYTYKERSM 371

Query: 356 AERLFREANVSVVWEPAPSVEAIRERDAQRILQ 388
             ++   A ++     AP++  I     + I +
Sbjct: 372 LSKIENMAGITFRRISAPTIHDITAAWGEEISK 404


>gi|189188996|ref|XP_001930837.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187972443|gb|EDU39942.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1165

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 108/394 (27%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 5   ENIPQVIGEALSERG-------------YVNLTSVQEAILNPDLREKDVLVSAQTGSGKT 51
           +N+P+ + +  ++ G             Y   T++Q   +      +D++  A+TGSGKT
Sbjct: 516 DNVPRPVTKW-AQMGLLQATMDVFTQVRYEKPTAIQSQAIPIAESGRDLIGVAKTGSGKT 574

Query: 52  VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIG 110
           +AFG+ +   +L +     P+  P+ L +APTREL++Q+  EL+   A +G+ +     G
Sbjct: 575 LAFGIPMIRHILDQRP-LKPSDGPIGLILAPTRELSLQIVHELKPFLAASGITIKCAYGG 633

Query: 111 GVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDLGFRD 167
                +     + G HI+  T GRL D I            +  VVLDEAD M D+GF  
Sbjct: 634 QPISEQIAMLKRGGIHILCATAGRLIDLISCNSGRVLSFKRITYVVLDEADRMFDMGFEP 693

Query: 168 DIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA 227
            +  IL +    R+ ++FSAT+   +  LAK   KD V + I  +++  ++I     +V 
Sbjct: 694 QVMKILANVRPDRQTILFSATMPKNMHALAKKALKDPVEIIIGGKSKVAAEITQIISVVP 753

Query: 228 LSD--RDNAIVNI----LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE-LSQ 280
            S   + N  +               ++F   + +       L +  +  V        Q
Sbjct: 754 PSYDKKINNTLLHLGRLFDEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQ 813

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+ A+   + G   + IAT VAARG+D+P L +V + +  ++ E+ +HR GRTGRAG 
Sbjct: 814 TDRNEAISDFKQGVLSILIATSVAARGLDVPGLAMVFNFDCPTHLEDYVHRCGRTGRAGN 873

Query: 341 KGMSVFVI-PQNMQRRAERL---FREANVSVVWE 370
           KG ++ +I     +R A  +    +E+   V  E
Sbjct: 874 KGTAITLIENPGQERFAVHIAKALKESGTEVPEE 907


>gi|116514512|ref|YP_813418.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093827|gb|ABJ58980.1| Superfamily II DNA and RNA helicase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/357 (31%), Positives = 179/357 (50%), Gaps = 9/357 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   I + L++ G++  T VQE ++   L+ + V+V A TGSGKT A+ + + + +  + 
Sbjct: 10  LRSEIRQGLAKIGFIKPTPVQEKVIPAMLKGESVIVQAATGSGKTHAYLIPILNAIDED- 68

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI---GGVSVHRERRDLQN 123
                A    A+  AP+RELA Q+ R    L   +G+ +A+     G     +  R  QN
Sbjct: 69  -----ARYVQAIVTAPSRELADQLYRVARQLRDNSGLNIAIAHLAGGSDRDRQIARFEQN 123

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              +V+ TPGRL D    K L +  +K  V+DEAD  LDLGF  D++ I    PK   M 
Sbjct: 124 KPQLVIATPGRLLDFADKKILLLDQVKNFVIDEADMTLDLGFLADVDKIAARLPKDVVMS 183

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHG 243
            FSATI   +T   + Y      + I +       I    + +   DR   +  +L    
Sbjct: 184 AFSATIPVKLTNFLRKYMAKPEEIVIDNPAVIAPTIKNDLLDIGSKDRKKIVYKLLTMGQ 243

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A+VF +T+  V      L +   +V  + G ++++ER   L+ +R G+ +  +A+D+
Sbjct: 244 PYLALVFANTKQMVDELADYLTKQGLKVAKIHGSITERERKRTLREVRAGQYQYVVASDL 303

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
           AARGIDLP + LVI+ E+  + E ++HR GRTGR G  G +V ++ +    R   L 
Sbjct: 304 AARGIDLPGVSLVINYEIPKDLEFIIHRIGRTGRNGLPGHAVTLVREEEMNRVGALE 360


>gi|242069203|ref|XP_002449878.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
 gi|241935721|gb|EES08866.1| hypothetical protein SORBIDRAFT_05g024780 [Sorghum bicolor]
          Length = 688

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 193/385 (50%), Gaps = 25/385 (6%)

Query: 11  IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LAENDR 68
           +  A+ E GY   + +Q A +   L+++D +  A+TGSGKT AF L L S +  L     
Sbjct: 284 LLRAVDEAGYRKPSPIQMAAIPLGLQQRDAIAVAETGSGKTAAFALPLLSYVAGLPPITD 343

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR---ERRDLQNGA 125
            +    P AL + PTREL+ Q+  E   L    GV V    GG S      +   +Q G 
Sbjct: 344 ENRHDGPYALVMVPTRELSEQIAEETARLARYLGVRVVPVFGGGSEKTIAEQSERIQKGC 403

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDI---------------- 169
            +VV TPGRL D +  + + ++    VVLDEAD M+D+GF   +                
Sbjct: 404 EVVVATPGRLLDLLERRYVVLNQCNYVVLDEADRMIDMGFEPQVASVLAVMPSSNLKPQN 463

Query: 170 -EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVAL 228
            +  LD     R   MFSAT+ PA+  LA+ Y ++ V V I +  +    I    +++  
Sbjct: 464 EDEELDEKKVYRTTFMFSATMPPAVERLARTYLRNPVVVTIGTPGKATELITQNVMMLKE 523

Query: 229 SDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
           S++   +  +LR    K  IVFC+T+ +       L    F V AL G L+Q ER  +L 
Sbjct: 524 SEKMPQLHRLLRDLRDKTVIVFCNTKKTTDWCFNELKNAGFGVTALHGNLTQAERKASLD 583

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R+ +  V +A++VAARGI++PD+  VI+ ++ S+    +H  GRTGRAG+KG++   +
Sbjct: 584 GFRNRQFNVLVASEVAARGINIPDVAHVINYDMPSSINKYIHCIGRTGRAGKKGVATSFL 643

Query: 349 P---QNMQRRAERLFREANVSVVWE 370
                ++    +++  ++N  V  E
Sbjct: 644 TLENTDIFFDLKQMLIQSNSHVPPE 668


>gi|224143128|ref|XP_002324856.1| predicted protein [Populus trichocarpa]
 gi|222866290|gb|EEF03421.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 176/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  ++ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +   +
Sbjct: 54  LKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTS 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            +       +AL +  TRELA Q+  E E               G    +  +D      
Sbjct: 114 GQV------IALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            H+VVGTPGR+    R K L++ +++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHVVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + +   +++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ-NMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +   +      ++  
Sbjct: 348 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|312214509|emb|CBX94500.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1118

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 105/421 (24%), Positives = 186/421 (44%), Gaps = 35/421 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +  V+ E +    Y + T +Q   +   L   DV+  AQTGSGKT AF + + S L+ + 
Sbjct: 128 LHPVMLENVKLCRYNSPTPIQSYCIPAVLTGNDVVAVAQTGSGKTAAFLIPILSKLMGKA 187

Query: 67  DRFSPASA---------------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
            + +                   PL L + PTRELA Q   E   L  +T +   V  GG
Sbjct: 188 RQLAAPRPSAARYNPQTDRVRAEPLVLVVCPTRELACQTFDEA--LCYRTMLRPCVIYGG 245

Query: 112 VSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIE 170
                +R  L+ G  +++ TPGRL D +     L+   LK  V+DEADE+L  G+ + +E
Sbjct: 246 APSKGQREQLELGCDVLIATPGRLMDFMSNNALLSFKRLKFTVIDEADELLSEGWDEIME 305

Query: 171 F-----ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL 225
                  +++      ++  +     A         +D VR+ +      H +I  + + 
Sbjct: 306 KLFAGADMNTDADHTYLMFSATFPKSARKLARDYMDEDYVRIKVGRVGSTHENIKQQIIY 365

Query: 226 VALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
           V  S ++ A+ +++   G +  +VF +++         L      V ++  + +Q+ER +
Sbjct: 366 VEESAKNQALFDLIFSEGPQRTLVFTNSKVKADVVDDFLYNKGLPVTSIHSDRTQRERED 425

Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSGRTGRAGRK 341
           AL+  R GR  + +AT V ARG+D+ +++ VI+ +L S         +HR GRT R G +
Sbjct: 426 ALRSFRTGRCPIMVATGVTARGLDVANVKHVINYDLPSTQHSGITEYVHRIGRTARIGNE 485

Query: 342 GMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEK 401
           G +        +   + L +            S + + +   Q + +DP  +D   G + 
Sbjct: 486 GKASSFFNDRNEDVGKDLVKIL--------IESKQEVPDFLQQHMPEDPSAIDWHDGTDD 537

Query: 402 K 402
           +
Sbjct: 538 E 538


>gi|315126555|ref|YP_004068558.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
 gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
          Length = 440

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 182/376 (48%), Gaps = 9/376 (2%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASA 74
           L+ +G    T +Q   +   L   D+   ++TGSGKT+AF L     ++ +  +      
Sbjct: 16  LAHQGITQPTDIQAHAVPTALAGHDIFAQSKTGSGKTLAFLLPAVQRVMKQ--KALSKRD 73

Query: 75  PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
           P  L +APTRELA QV  +L  L A T +     +GG + + + + L+N  H VV TPGR
Sbjct: 74  PRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKALRNDPHFVVATPGR 133

Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM---LMFSATISP 191
           L DH++ + L +S L+ ++ DEAD +LDLGF D ++ I + +  + R       +   + 
Sbjct: 134 LADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRLRQTLLFSATLDHAQ 193

Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFC 251
                    +K    +  A+  +         +   L  ++  + + L        I+F 
Sbjct: 194 VDALSRNLLKKPKQIMLSAANEQHSDIKQTLYLADHLDHKEALLEHFLNQDNVGQCIIFT 253

Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
           +TRA  SR ++ L    F+ VAL+G+L+Q +R + +        ++ I TDVA+RG+DL 
Sbjct: 254 ATRADTSRLSESLNSKGFKSVALAGDLTQSKRLDIMDAFSRENFKILITTDVASRGLDLL 313

Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEP 371
            +  VI+ +L  + E  +HR GRTGRAG KG ++ ++          +    N  + +  
Sbjct: 314 SVTHVINFDLPKHAEEYVHRIGRTGRAGFKGNALSLVGPKDWASYLAIKSFLNDELSFAA 373

Query: 372 APSVEA----IRERDA 383
               +A    I+E+  
Sbjct: 374 VEGFKAKFKGIKEKKV 389


>gi|119572209|gb|EAW51824.1| hCG2039634, isoform CRA_c [Homo sapiens]
          Length = 444

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 56  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 115

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 116 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 169

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 170 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 229

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 230 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 289

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 290 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 349

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 350 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 409

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 410 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 441


>gi|119572213|gb|EAW51828.1| hCG2043426, isoform CRA_b [Homo sapiens]
          Length = 479

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 91  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 150

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 151 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 205 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 265 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 384

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 445 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 476


>gi|114663478|ref|XP_001170187.1| PREDICTED: hypothetical protein isoform 17 [Pan troglodytes]
          Length = 459

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 71  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 130

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 131 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 184

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 185 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 244

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 245 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 304

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 305 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 364

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 365 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 424

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 425 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 456


>gi|8922886|ref|NP_060802.1| ATP-dependent RNA helicase DDX19A [Homo sapiens]
 gi|114663472|ref|XP_001170311.1| PREDICTED: hypothetical protein isoform 21 [Pan troglodytes]
 gi|114663474|ref|XP_001170333.1| PREDICTED: hypothetical protein isoform 22 [Pan troglodytes]
 gi|332846345|ref|XP_003339332.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 1 [Pan
           troglodytes]
 gi|73919226|sp|Q9NUU7|DD19A_HUMAN RecName: Full=ATP-dependent RNA helicase DDX19A; AltName:
           Full=DDX19-like protein; AltName: Full=DEAD box protein
           19A
 gi|7023599|dbj|BAA92022.1| unnamed protein product [Homo sapiens]
 gi|13477371|gb|AAH05162.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|16306840|gb|AAH06544.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|50949502|emb|CAH10622.1| hypothetical protein [Homo sapiens]
 gi|119572211|gb|EAW51826.1| hCG2039634, isoform CRA_e [Homo sapiens]
 gi|187950671|gb|AAI37498.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|187952631|gb|AAI37497.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [Homo sapiens]
 gi|325463431|gb|ADZ15486.1| DEAD (Asp-Glu-Ala-As) box polypeptide 19A [synthetic construct]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
 gi|293341214|ref|XP_002724870.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54-like isoform 2
           [Rattus norvegicus]
          Length = 874

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 135/593 (22%), Positives = 236/593 (39%), Gaps = 55/593 (9%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L A  
Sbjct: 102 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKAR- 160

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 161 ---SAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPD 217

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 218 IIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFS 277

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  +++ +  +     LV    +      +        
Sbjct: 278 ATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQ 337

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L Q  R   L      +    I TD+A
Sbjct: 338 DQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLA 397

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 398 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLG 457

Query: 365 VSVV---WEPAPSVEAI----------------RERDAQRILQDPLFLDSIQGDEKKMVD 405
            SV        PS  A+                 +   Q  LQ  L L  +Q        
Sbjct: 458 RSVTLARPHEEPSSGAVGRDGVLGRVPQSVVDDEDSSLQTALQASLELQGLQRVANNAQQ 517

Query: 406 VLLAKH---DPEKI-AAGFLRIHRAGLCA-------PEEITPVSLVSGRDRFRDDSRAFK 454
             L       PE I  A  L +   GL           E+  + LV     +R  +  F+
Sbjct: 518 QYLRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIKNYRTRTTIFE 577

Query: 455 VGGGSRDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVS 514
           +   S+D             +K++ + + +        G   +  G     P     E+ 
Sbjct: 578 INASSKDPSSQMMR------AKRQRDRKAITSF---HQGRQERQDGPADPVPQR---ELP 625

Query: 515 ADGVDLLRRTVKLDKGIQLKYLGGEKPDFRGYKSSGFKSKNSQDGATKRFKRF 567
               + +  TV+   G+  + +G ++P  R   + G K +  +  A++R + F
Sbjct: 626 QKEEEDMVETVE---GVFTEVVGQKQP--RPGPNQGAKRRRKE--ASQRDQEF 671


>gi|83286284|ref|XP_730094.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23489719|gb|EAA21659.1| DEAD box polypeptide, Y chromosome-related [Plasmodium yoelii
           yoelii]
          Length = 908

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/397 (27%), Positives = 186/397 (46%), Gaps = 42/397 (10%)

Query: 15  LSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST-LLAENDRFS--- 70
           + +  Y   T +Q+  L+  + + D++  AQTGSGKT  + L + +  LL +  + +   
Sbjct: 337 IKKVHYDKTTPIQKYSLSIIMNKHDLIGVAQTGSGKTAGYLLPIINHMLLNDPPKHTFYE 396

Query: 71  -----------PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                          P+ L +APTRELAVQ+  + +    +TG+   V  GG ++  +  
Sbjct: 397 DNNKNSNYYYNRVCLPICLILAPTRELAVQIFYDSKKFCFETGIKSVVLYGGSNIKTQLS 456

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L  GA I+V TPGRL D +    + +     +VLDEAD MLD+GF   I+ I++     
Sbjct: 457 NLDKGADIIVATPGRLNDILEKGKIRLFLTSFLVLDEADRMLDMGFSPQIKSIVNDYDMP 516

Query: 180 ------------------------RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQ 215
                                   R+ +MFSAT    I  LAK+Y  +   + +      
Sbjct: 517 GNDNDSYMGENKMEYKKYTNEIVKRQTIMFSATFRKEIQVLAKDYLCNYTFLLVGKVGST 576

Query: 216 HSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS 275
           +  I    V     ++ + ++ +L  +     I+F  T+       + L       V + 
Sbjct: 577 NEYIKQNLVYSEEENKCSFLLKLLSENSNGLTIIFVETKRKADIIERFLNNQKLNAVCIH 636

Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
           G+ SQ ER  AL++ + G   + +ATDVAARG+D+ +++ VI+ +L SN ++ +HR GRT
Sbjct: 637 GDKSQDERERALELFKRGVKNILVATDVAARGLDISNIKHVINFDLPSNIDDYIHRIGRT 696

Query: 336 GRAGRKGMSVFVIPQNMQRRAERL---FREANVSVVW 369
           GRAG  G++   +  + +   + L     E N  +  
Sbjct: 697 GRAGNIGIATSFVNDDNKNIFKDLLATLEECNQEIPR 733


>gi|212527694|ref|XP_002144004.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
 gi|210073402|gb|EEA27489.1| ATP dependent RNA helicase (Dbp8), putative [Penicillium marneffei
           ATCC 18224]
          Length = 538

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 170/384 (44%), Gaps = 24/384 (6%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   + ++LS       T++Q++ +   L+ KD +  ++TGSGKT+AF + +      +
Sbjct: 114 NVAPWLVKSLSTMAIRRPTAIQKSCIPEILKGKDCIGGSRTGSGKTIAFAVPILQKWAED 173

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
                      A+ + PTRELA+Q+  + + + A   +   +  GG  +  +   L    
Sbjct: 174 P------FGVFAVVLTPTRELALQIFEQFKAISAPQSLKPVLITGGTDMRPQAIALSQRP 227

Query: 126 HIVVGTPGRLCDHIRGKGLNI----SHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR 181
           H+++ TPGRL DHIR  G +     + ++ VV+DEAD +L  G    +  +         
Sbjct: 228 HVIIATPGRLADHIRTSGEDTIVGLNRVRMVVMDEADRLLTSGQGSMLPDVETCLSALPP 287

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
                  +  A  T      K   R                   +  + +   +   + +
Sbjct: 288 SSERQTLLFTATVTPEVRALKSMPRPANRPPIHVTEIGTENHAPIPPTLKQTYLQVPMTH 347

Query: 242 HGA-------------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQ 288
             A             K AI+FC+   +     ++L     +V +L   L Q ER+  L 
Sbjct: 348 REAFLHVLLSTERNSTKPAIIFCNRTRTADLLERILRRLSHRVTSLHSLLPQSERTANLS 407

Query: 289 MMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
             R   AR+ +ATDVA+RG+D+P++ LVI+ ++  NP++ +HR GRT RAGR G SV ++
Sbjct: 408 RFRASAARLLVATDVASRGLDIPNVSLVINFDVPRNPDDYVHRVGRTARAGRTGESVTLV 467

Query: 349 PQNMQRRAERLFREAN-VSVVWEP 371
            Q   +    + +      + WE 
Sbjct: 468 GQRDVQLVLAIEKRVGRQMIEWEE 491


>gi|253746576|gb|EET01760.1| ATP-dependent RNA helicase HAS1, putative [Giardia intestinalis
           ATCC 50581]
          Length = 545

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 183/417 (43%), Gaps = 14/417 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   + EA+   G+ N+T +Q A +   L  +++   A TGSGK++AF L     +   
Sbjct: 35  SLSPFLLEAIDAMGHKNMTRIQAASIPVILSGRNMTAKAHTGSGKSLAFLLPAIDLIHKA 94

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
           N +    +  + L   PTRELA+Q+      L + T + V + IGG S  +E   L  GA
Sbjct: 95  NMKLHHGTGVIVL--TPTRELALQLYNVATQLISATNITVGLAIGGTSRQKEANHLCKGA 152

Query: 126 HIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFILDSS------PK 178
            IV+ TPGRLCDH+          L  ++LDEAD +L+ GF+ ++E IL           
Sbjct: 153 SIVIATPGRLCDHLNNTPGFKTDKLFMLILDEADMLLEYGFQQELEAILRMLPGPKLRQV 212

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
                  S                  +  +  S     +  +   ++     R   +   
Sbjct: 213 CFFSATMSDKCLEVPHMEVNKETLVRINTDTKSSTATRAHFEQGYIICPPEQRFLLLYTF 272

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQERSNALQMMRDGRARV 297
           ++    K  IVF S+R SV  + + L       V +  G + Q++R        + ++ V
Sbjct: 273 MKRRSDKKIIVFLSSRDSVEFYYEFLRFIGMASVLMLDGGMKQKQRMETYNKFCNAQSGV 332

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG--RKGMSVFVIPQNMQRR 355
            +AT+VAARG+DLP ++ VI  +   + E+ +HR+GR  R    +KG+ +  +  +  + 
Sbjct: 333 LLATNVAARGLDLPAIDYVIQFDPPESVESYIHRAGRACRGDTSKKGVGLLFLMSHETKF 392

Query: 356 AERLFREANVSVVWEPAPSVEAIR-ERDAQRILQDPLFLDSIQGDEKKMVDVLLAKH 411
                +  NVS+     P+ + I  + + + ++    +L     +  +      A H
Sbjct: 393 I-SFLKAHNVSLFEFEFPADKIINVQAEMENLIATIYYLRRKAQNAYRSFISAYASH 448


>gi|50547433|ref|XP_501186.1| YALI0B21538p [Yarrowia lipolytica]
 gi|74660084|sp|Q6CDS6|ROK1_YARLI RecName: Full=ATP-dependent RNA helicase ROK1
 gi|49647052|emb|CAG83439.1| YALI0B21538p [Yarrowia lipolytica]
          Length = 547

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 168/403 (41%), Gaps = 11/403 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   +   L +  Y + T +Q   +   L  +D++  A TGSGKT+A+ + +   L  +
Sbjct: 117 NLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVEMLGKK 176

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH------RERR 119
                      AL +APT+ELA Q+   +  L    G         +         R  +
Sbjct: 177 KGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDKSTADKLRNGK 236

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
                  I + TP RL   +    L++  L  V+ DEAD++ + GF   ++ IL + P  
Sbjct: 237 VSSQKYDICITTPLRLVSALNDGSLDLGSLDLVIFDEADKLFEKGFATQVDDILAACPSG 296

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
            +  +FSATI  ++  LA +         I    +  +    + ++ A ++    +    
Sbjct: 297 IQKTLFSATIPASVEQLANSIMSTDPLRIIIGNKQAAAQTVEQKLVYAGNEEGKLVAIRQ 356

Query: 240 RYHGAK---NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                +     I+F  +        K L      V  + G+++  +R++ +   R+G   
Sbjct: 357 MAREGQLVAPVIIFLQSIDRAKALFKELVFDGINVDQIHGDMTAAKRASVIDRFRNGEVW 416

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           V I TDV ARGID   + LVI+ ++  + ++ +HR GRTGRAGR G +V    +      
Sbjct: 417 VLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNV 476

Query: 357 ERLFREANVSVVWEP--APSVEAIRERDAQRILQDPLFLDSIQ 397
           + +      S    P    ++  + +++   I   P+    I 
Sbjct: 477 KVVVNVMKQSGQEVPDWLNNLAPLTQKERDNIKNRPIKRKKIS 519


>gi|76798781|ref|ZP_00780996.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
 gi|76585865|gb|EAO62408.1| ATP-dependent RNA helicase [Streptococcus agalactiae 18RS21]
          Length = 359

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 167/363 (46%), Gaps = 10/363 (2%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
            K F N    I  AL E  +V+ T VQ  ++      +D++  ++TGSGKT  F L +  
Sbjct: 3   FKDF-NFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFE 61

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG---GVSVHRE 117
            L   +D          +  AP+REL  Q+ +  + +   +   + V         + + 
Sbjct: 62  KLDESSDDV------QVVITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQI 115

Query: 118 RRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP 177
            +   +  HIV+GTPGR+ D ++   L I      V+DEAD  LD+GF D ++ I  S P
Sbjct: 116 EKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLP 175

Query: 178 KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN 237
           K  ++L+FSATI   +    K Y  + V   I +       ID   +     D++  I+ 
Sbjct: 176 KDVQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILE 235

Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
           + +      A++F +T+         L+ +  +V  + G ++ +ER   +  +++     
Sbjct: 236 LSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFEY 295

Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE 357
            +ATD+AARGID+  +  VI+  +  +    +HR GRTGR G  G ++ +   +      
Sbjct: 296 IVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIR 355

Query: 358 RLF 360
            L 
Sbjct: 356 ELE 358


>gi|312128901|ref|YP_003996241.1| dead/deah box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
 gi|311905447|gb|ADQ15888.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
           DSM 17132]
          Length = 438

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 9/384 (2%)

Query: 1   MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
           M+  E N+ + +  AL +  + + T +QE + +  +  +D+   A+TG+GKT A+ L L 
Sbjct: 1   MQFSELNLNKPLLRALEDLQFSSPTPIQEKVFSVLMSGRDLAGIARTGTGKTFAYLLPLL 60

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                  D+      P  L + PTREL +QV    + L       V    GGV++  +  
Sbjct: 61  RMWTFSKDKL-----PQILVLVPTRELVMQVVESAKALSTYMSFDVVGVYGGVNMKSQAA 115

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           +L  G  +VV TPGR  D      L + ++K +V+DE D MLDLGFR  ++ I +  P++
Sbjct: 116 ELMQGCDMVVATPGRFTDLAAAGVLKVKNIKKLVIDEFDMMLDLGFRPQLDLIFNKIPER 175

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR-AVLVALSDRDNAIVNI 238
           R+ L+FSAT+S  + +L  +  K  + +           I  +   +     + N +  +
Sbjct: 176 RQNLLFSATLSEEVGSLIGDIFKTPIIIEDDDIGTPIESILQKTYAVPNFKTKINLLDLL 235

Query: 239 --LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
                   KN I      A+   F ++ +  +  V  +    SQ  R  A++   DG  +
Sbjct: 236 LGNDPDMQKNLIFVAQKSAADLLFQELKSRGMESVEVIHSNKSQNYRFRAIKSFSDGEIK 295

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             I+TD+ +RG+D+  +  V++ ++ +   + +HR GRTGR G  G ++  +    +   
Sbjct: 296 TLISTDIGSRGLDIKGITHVVNMDVPTEKTDYVHRIGRTGRGGNSGTAISFVSPKEEEDF 355

Query: 357 ERLFREANVSVVWEPAPSVEAIRE 380
             +     + +   P P    I E
Sbjct: 356 AEIEEMYQLQLQRIPLPPYLEIEE 379


>gi|297271814|ref|XP_001110023.2| PREDICTED: sentrin-specific protease 3-like isoform 3 [Macaca
           mulatta]
          Length = 971

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 108/375 (28%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 603 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 662

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 663 ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 716

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 717 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 776

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 777 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 836

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 837 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 896

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 897 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 956

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 957 NTSIEEMPLNVADLI 971


>gi|156399588|ref|XP_001638583.1| predicted protein [Nematostella vectensis]
 gi|156225705|gb|EDO46520.1| predicted protein [Nematostella vectensis]
          Length = 433

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 18/390 (4%)

Query: 2   KIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREK--DVLVSAQTGSGKTVAFGLA 57
           K FE +P    +   + + G+   + +QE  L   L +   +++  +Q+G+GKT AF L 
Sbjct: 46  KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLT 105

Query: 58  LASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE 117
           + S + A          P  + ++PT ELA Q G+  E +      +        +    
Sbjct: 106 MLSRVDATKP------YPQVICLSPTYELARQTGKVAEAMGKHCPHIKINYAVRGNQFPR 159

Query: 118 RRDLQNGAHIVVGTPG-RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
            +   +   I             +        +  +   +    L       I       
Sbjct: 160 GQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVLDEADIMIALQGHQDQSIRIHKSLH 219

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
              + +L  +      +           +      E    +   Y  V     D+  A+ 
Sbjct: 220 KDCQVLLFSATYDEDVMKFAETVVPNPIIIRLRREEESLDNIKQYYVVCKNSEDKFEALC 279

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
           N+         +VFC TR + +   + + +    V  LSGE++ ++R   L+  R G+ +
Sbjct: 280 NMYGVLSIGQCVVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERFRLGKEK 339

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNP------ENLLHRSGRTGRAGRKGMSVFVIP- 349
           + I T+V+ARGID+  + LVI+ ++  +       E  LHR GRTGR G+ G++V  I  
Sbjct: 340 LLITTNVSARGIDVEQVTLVINYDMPMDMQGKADFETYLHRIGRTGRFGKSGIAVNFIDG 399

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIR 379
           Q      +++       +    A  V+ + 
Sbjct: 400 QRSMNIMKKIEEHFGKKIQHLQADDVDELE 429


>gi|296231548|ref|XP_002761184.1| PREDICTED: ATP-dependent RNA helicase DDX19A isoform 1 [Callithrix
           jacchus]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 164/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G  +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RYPQCLCLSPTYELALQTGNVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|328699354|ref|XP_001948802.2| PREDICTED: ATP-dependent RNA helicase DDX19A-like [Acyrthosiphon
           pisum]
          Length = 464

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/398 (24%), Positives = 175/398 (43%), Gaps = 22/398 (5%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE   +   + + + E GY   + +QE  L   L    ++++  +Q+G+GKT AF L
Sbjct: 74  VKSFELLKLHPNLLKGVYEMGYNAPSKIQETALPLLLDNPPQNLIAQSQSGTGKTAAFVL 133

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ S +  E         P  + ++PT EL +Q G  +  +      +       V    
Sbjct: 134 AMLSRVDPEFQ------HPQVVCLSPTYELTIQTGEVIAKMSIYCPNIK--LRYAVRGEN 185

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGK-GLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
             +  +   HI+VGTPG++ D        N  ++K  VLDEAD M+D     D  F +  
Sbjct: 186 VEKGSKIEEHIIVGTPGKVLDWATKFKFFNPKNIKVFVLDEADIMVDTQGHQDQSFRIRK 245

Query: 176 S--PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN 233
                 + M   +      +           +      E    +   Y        D+ N
Sbjct: 246 LLPETCQMMFFSATYTEDVMMFANAIAPMSVIIRLKREEETLDNIRQYYVNCNNKEDKYN 305

Query: 234 AIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDG 293
           A+VNI        A++FC T+         +AE    V  LSGEL+ ++R + L   R+G
Sbjct: 306 ALVNIYGGVTIGQAMIFCQTKKMALWLINQMAEQGHAVALLSGELTIEQRISVLDRFREG 365

Query: 294 RARVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFV 347
           + +V + T+V +RGID+  + +VI+ +L        + +  LHR GRTGR G+KG+++ +
Sbjct: 366 KEKVLVTTNVLSRGIDIEQVTIVINFDLPVTVTLEPDYDTYLHRIGRTGRFGKKGIAINL 425

Query: 348 IP-QNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQ 384
           +   + Q   +++       +      +V+ + + +A+
Sbjct: 426 VSGSSDQFILKQIEERFCKPIECLNTNNVDDMEKLEAE 463


>gi|67971298|dbj|BAE01991.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|297703839|ref|XP_002828834.1| PREDICTED: ATP-dependent RNA helicase DDX39-like isoform 2 [Pongo
           abelii]
          Length = 483

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 177/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DVL  A++G GKT  F LA    +   N
Sbjct: 107 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN 166

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--VSVHRERRDLQNG 124
            + +       L +  TRELA Q+ +E E        V      G       E    +N 
Sbjct: 167 GQVT------VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNC 220

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            H+VVGTPGR+   +R +  ++ ++K  VLDE D+ML+    R D++ I   +P +++ +
Sbjct: 221 PHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCM 280

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-ALSDRDNAIVNILRYH 242
           MFSAT+S  I  + + + +D + V +  E +       +  +    S+++  + ++L   
Sbjct: 281 MFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVL 340

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                I+F  +        ++L E  F  +A+   ++Q+ER +  Q  +D + R+ +AT+
Sbjct: 341 EFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATN 400

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP-QNMQRRAERLFR 361
           +  RG+D+  + +V + ++  + +  LHR  R GR G KG+++  +  +N  +    +  
Sbjct: 401 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 460

Query: 362 EANVSVVWEP 371
              V+V   P
Sbjct: 461 RFEVNVAELP 470


>gi|225454506|ref|XP_002277120.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 851

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/395 (29%), Positives = 176/395 (44%), Gaps = 17/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L+   
Sbjct: 390 ISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSP 449

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQ 122
              R       + L I PTRELA Q   E   L        V  V  G      ++R   
Sbjct: 450 PISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQA 509

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ + PK+
Sbjct: 510 NPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 569

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--- 236
           R+ L+FSAT+   +  +     K         +               ++  D   +   
Sbjct: 570 RQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLY 629

Query: 237 ----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
               + +        +VFC+T         +L E    V  +     Q  R+      R 
Sbjct: 630 ALLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRK 689

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++    
Sbjct: 690 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWE 749

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +     L    ++ +    AP V+    +  +R L
Sbjct: 750 EFF---LSTAKDLPITKAEAPLVDPDTRKKVERAL 781


>gi|297745425|emb|CBI40505.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/395 (29%), Positives = 176/395 (44%), Gaps = 17/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L+   
Sbjct: 271 ISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSP 330

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQ 122
              R       + L I PTRELA Q   E   L        V  V  G      ++R   
Sbjct: 331 PISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQA 390

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ + PK+
Sbjct: 391 NPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 450

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--- 236
           R+ L+FSAT+   +  +     K         +               ++  D   +   
Sbjct: 451 RQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLY 510

Query: 237 ----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
               + +        +VFC+T         +L E    V  +     Q  R+      R 
Sbjct: 511 ALLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRK 570

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++    
Sbjct: 571 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWE 630

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +     L    ++ +    AP V+    +  +R L
Sbjct: 631 EFF---LSTAKDLPITKAEAPLVDPDTRKKVERAL 662


>gi|147820620|emb|CAN67649.1| hypothetical protein VITISV_005080 [Vitis vinifera]
          Length = 863

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/395 (29%), Positives = 176/395 (44%), Gaps = 17/395 (4%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           I  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L+   
Sbjct: 402 ISPLSLKAIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEILVKSP 461

Query: 67  D--RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQ 122
              R       + L I PTRELA Q   E   L        V  V  G      ++R   
Sbjct: 462 PISRDQKRPPIVVLVICPTRELASQAAAEANTLLKYHPSLGVQVVIGGTRLALEQKRMQA 521

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DHI         +  +K +VLDEAD +LD+GFR DIE I+ + PK+
Sbjct: 522 NPCQILVATPGRLKDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQ 581

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV--- 236
           R+ L+FSAT+   +  +     K         +               ++  D   +   
Sbjct: 582 RQTLLFSATVPEEVRQICHIALKRDHEFINTVQEGSEETHSQVRQTHIIAPLDKHFLLLY 641

Query: 237 ----NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
               + +        +VFC+T         +L E    V  +     Q  R+      R 
Sbjct: 642 ALLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQGYRTRVSDEFRK 701

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            +  + + +DV+ARG+D PD+ LVI   L S+ E  +HR GRTGR G++G  + ++    
Sbjct: 702 SKGLILVTSDVSARGVDYPDVTLVIQVGLPSDKEQYIHRLGRTGRKGKEGQGILLLAPWE 761

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRIL 387
           +     L    ++ +    AP V+    +  +R L
Sbjct: 762 EFF---LSTAKDLPITKAEAPLVDPDTRKKVERAL 793


>gi|294633723|ref|ZP_06712281.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
 gi|292830365|gb|EFF88716.1| ATP-dependent RNA helicase [Streptomyces sp. e14]
          Length = 498

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 187/368 (50%), Gaps = 7/368 (1%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           ++ F ++  P+ +  AL  +G      +Q A L   L  +DVL   +TGSGKT+AFGLAL
Sbjct: 68  VESFADLDMPRELLAALGSQGLTVPFPIQAATLPNSLAGRDVLGRGRTGSGKTLAFGLAL 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            + +  +    + A  PL L + PTRELA QV   L        + +A  +GG+S  R+ 
Sbjct: 128 LARVAGQP---AAARQPLGLILVPTRELAQQVSDALAPYARSVKLRLATVVGGMSTGRQA 184

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             L++GA +VV TPGRL D I      +  +   VLDEAD+M D+GF   +  +LD    
Sbjct: 185 GVLRSGAEVVVATPGRLKDLIDRGDCRLDQVCVTVLDEADQMADMGFMPQVTALLDQVRP 244

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238
             + ++FSAT+   +  L + Y  D V  ++       + +++  + V  +D+       
Sbjct: 245 GGQRMLFSATLDRDVDRLVRRYLSDPVVHSVDPPAGAVTTMEHHVLHVHGADKRA--ATT 302

Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVC 298
                    I+F  T  +V R T+ L     +  AL G  +Q +R+  L   + G   V 
Sbjct: 303 EIAARDGRVIMFLDTEHAVDRLTEHLLSSGVRAAALHGGKTQPQRTRTLAQFKTGHVSVL 362

Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358
           +AT+VAARGI + +L+LV++ +  ++ ++ LHR  RT RAG  G  V ++  N +R   R
Sbjct: 363 VATNVAARGIHVDNLDLVVNVDPPTDHKDYLHRGDRTARAGEPGSVVTLVTPNQRRGMTR 422

Query: 359 LFREANVS 366
           +   A ++
Sbjct: 423 VMAAAGIT 430


>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
           carolinensis]
          Length = 840

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 188/441 (42%), Gaps = 16/441 (3%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F + +   L A +
Sbjct: 70  LSYPVFKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFEKLKAHS 129

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
            +    +   AL ++PTRELA+Q  +  + L    G+  A+ +GG  +  +   L     
Sbjct: 130 AK----TGARALILSPTRELALQTLKFTKELGRFAGLKTALILGGDKMEDQFAALHENPD 185

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P+ R+ ++FS
Sbjct: 186 IIIATPGRLMHVAVEMKLKLHSVEYVVFDEADRLFEMGFSEHLKEIISRLPESRQTVLFS 245

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVN--ILRYHGA 244
           AT+   +   A+    + V + +  E++    +      +   D+   ++          
Sbjct: 246 ATLPKVLVEFARAGLTEPVLIRLDVESKLSEQLKLSFYHIRADDKPALLLYLLRTVVRPQ 305

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              IVF +T+       ++L         +   L Q  R   +     G+  V I TD+A
Sbjct: 306 DQTIVFVATKHHTEYLKELLTAQGVDCTHVYSSLDQTARKINIGKFTHGKCSVLIVTDLA 365

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARGID+P L+ VI+    + P+  LHR GR  RAGR G +   +  +       L     
Sbjct: 366 ARGIDIPLLDNVINYSFPAKPKLFLHRVGRVARAGRSGTAYSFVAPDETPYLFDLHLFLG 425

Query: 365 VSVVW----EPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
             +V     E     + +  R  Q I+ D   L     +  + +          ++A   
Sbjct: 426 RPLVLASPHEKPKDTDGMFGRVPQSIIDDEESLLQTDHERSQELQ------SLRQVADNA 479

Query: 421 LRIHRAGLCAPEEITPVSLVS 441
            + ++    AP   +   +  
Sbjct: 480 QKQYQKSRPAPSSESIKRVKE 500


>gi|114647102|ref|XP_001152218.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 4 [Pan
           troglodytes]
          Length = 808

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 159/355 (44%), Gaps = 6/355 (1%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDL 453


>gi|74139596|dbj|BAE40935.1| unnamed protein product [Mus musculus]
          Length = 406

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 109/375 (29%), Positives = 189/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     R + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWRLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|170017592|ref|YP_001728511.1| superfamily II DNA/RNA helicase [Leuconostoc citreum KM20]
 gi|169804449|gb|ACA83067.1| Superfamily II DNA and RNA helicase [Leuconostoc citreum KM20]
          Length = 454

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 171/346 (49%), Gaps = 9/346 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+   I  AL+  G++  T+VQ  ++   L+  DV+  +QTGSGKT  F + + + L   
Sbjct: 12  NLKSDIISALTAIGFIQPTAVQAKLIPAVLQGHDVVGQSQTGSGKTHTFLIPIINQLE-- 69

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAV---CIGGVSVHRERRDLQ 122
                  +   A+   P+RELA Q+ +  +    K    V +     G   + + ++   
Sbjct: 70  ----QGKNYVQAVITTPSRELAAQITKAAKQFADKLPYEVTISEFVGGTDKLRQVKQLEN 125

Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
           N   I++GTPGR+ D +    L +  +K +V+DEAD  LD+GF +++++I  + P+K + 
Sbjct: 126 NQPQIIIGTPGRIKDLVSSGALKLHAVKTLVVDEADMTLDMGFLNEVDYIAGAMPEKLQT 185

Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
           L+FSAT+   +    K Y  +     I         ID   +     D+++ I  IL   
Sbjct: 186 LVFSATMPEKLKPFLKKYLDNPKFEAIPVSTVIAETIDNWLLATKSKDKNDVIYQILSIS 245

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
               A+VF +T+         L     +V  + G++  +ER   ++ +++   +  +ATD
Sbjct: 246 NPYLALVFANTKDRAKEIASNLRSKGLKVAEIHGDIEPRERRRVMKAIQNLDYQYVVATD 305

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
           +AARGID+  +  VI+ ++    E  +HR GRTGR G  G+++ + 
Sbjct: 306 LAARGIDIEGVSHVINDDIPGELEFFVHRVGRTGRNGMPGLAITLY 351


>gi|227894658|ref|ZP_04012463.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
 gi|227863553|gb|EEJ70974.1| ATP-dependent RNA helicase [Lactobacillus ultunensis DSM 16047]
          Length = 453

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 183/386 (47%), Gaps = 12/386 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IFE+  I   I E L +  +   T VQE ++   L +  V+V A TGSGKT A+ + + 
Sbjct: 3   NIFEDSRIKPAIQEGLKKIHFNKPTKVQEKVIPAMLSDLSVIVQAATGSGKTHAYLVPIF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + +  +      A    A+   P+RE      QV REL         +  +  G     +
Sbjct: 63  NEIEED------AHYVQAIITLPSRELADQLYQVARELRNASGMHFSIAHLAGGTDRERQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +       +V+ TPGRL D ++ K   +  +K  V+DEAD  LD+GF  DI+ +    
Sbjct: 117 LEKYENRTPQLVIATPGRLLDFVQKKVFAVDQIKTFVIDEADMTLDMGFLSDIDQVAAKM 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK+ ++  FSATI   +    + Y      + I +       I    + +   +R + + 
Sbjct: 177 PKEVQIAAFSATIPVKLANFLRKYMAHPDEIVIDNPAVIAPTIKNDLLDIGSKNRKSVLY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T+ L +   +V  + G ++++ER   L+ +  G+ +
Sbjct: 237 KLLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARG+D+  + LVI+ E+  + E ++HR GRTGR G  G ++ +I +    R 
Sbjct: 297 YVVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   V   +    + E +  + 
Sbjct: 357 EDLEK-MGVHFDFVEVKNGELVPRKH 381


>gi|153832565|ref|ZP_01985232.1| DNA and RNA helicase [Vibrio harveyi HY01]
 gi|148871131|gb|EDL70009.1| DNA and RNA helicase [Vibrio harveyi HY01]
          Length = 412

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 122/411 (29%), Positives = 187/411 (45%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  KDVL  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTDIQALAIPELLSGKDVLALANTGSGKTLAYGLPLLEKLSVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA+QV   +  +    G+      GGV    + + L    
Sbjct: 66  PEQ-------KALILVPTRELAIQVSEAINQVGQSIGLNAVCLCGGVDKETQLQALAANP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
            I+V T GRL D        +S++  +VLDEAD +LD+GF  D++ I   +  +R+  MF
Sbjct: 119 QILVATTGRLVDLANNGL-ELSNIHYLVLDEADRLLDMGFWPDVQNIAGQTSNQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK       +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKAKQLMHAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIKQNVWA 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +       L G  SQ ER  AL   + G+ +V IATD+ A
Sbjct: 238 QVLVFIGAKENADGLAKKLNKAGITTNVLHGNKSQAEREEALAQFKSGQTQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FR 361
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+ + ++          +     R
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVVISLVCHGEAEALSAIRNLTQR 357

Query: 362 EA------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
           E          V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ELPTQDLEGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKPKRQA 408


>gi|224371289|ref|YP_002605453.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
 gi|223694006|gb|ACN17289.1| RecQ2 [Desulfobacterium autotrophicum HRM2]
          Length = 537

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/390 (30%), Positives = 198/390 (50%), Gaps = 5/390 (1%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++P  +  A+S+  +     VQ  +L   L  KD    AQTG+GK+ AF + + + L+  
Sbjct: 102 DLPLGLMHAISDENFQYCMPVQAEVLPHTLMGKDATAKAQTGTGKSAAFLVTIIARLMKN 161

Query: 66  NDRFSPASA-PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD-LQN 123
             R       P AL I PTREL +Q+ ++ + L   T +      GG+   R++      
Sbjct: 162 PTRGKREKGTPRALIIEPTRELVLQIEKDAKALTLYTPLRTVSVFGGMDYKRQQDQLASA 221

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
              I+  TPGRL D +R K +N+  ++ +V+DEAD +LD+GF  D+  I+ ++P K+   
Sbjct: 222 HVDIIAATPGRLMDFMRQKLINLGKIEILVIDEADRLLDMGFIPDMRNIIYNTPHKKERQ 281

Query: 184 --MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRY 241
              FSAT++P I  +A  +  D   V I  +      I+ +  +V    +   + N++  
Sbjct: 282 TLFFSATLAPEILRMANQWTVDPAVVEIDPDKTAADSINQKVFIVTEDQKFPLLYNLISG 341

Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
              +  I+F + R++  R  + L +       LSGE+SQ++R   L   R+G+ RV +AT
Sbjct: 342 EKLERVILFVNMRSTTRRIAQRLVQFDISSEILSGEVSQKQRIRTLDDFRNGKVRVLVAT 401

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
           DVAARG+ +  +  VI+ +L  +PE+ +HR GRTGRAG +G+SV    +    +   +  
Sbjct: 402 DVAARGLHIEGVSHVINYDLPQDPEHYIHRIGRTGRAGAEGISVSFADEMSSFQIPDIEA 461

Query: 362 EANVSVVWE-PAPSVEAIRERDAQRILQDP 390
                +  E P  ++ A   +  +RI   P
Sbjct: 462 VLGNKLECEYPDDAMLAPLPKPKRRIPPKP 491


>gi|114647098|ref|XP_001152159.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 3 [Pan
           troglodytes]
          Length = 916

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLRNMVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 601


>gi|38014855|gb|AAH05848.2| DDX54 protein [Homo sapiens]
          Length = 864

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 86  LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 144

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 145 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 201

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 202 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 261

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 262 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQ 321

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 322 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 381

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 382 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 441

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 442 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 487

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 488 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 540

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 541 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 584


>gi|189491668|ref|NP_084212.2| probable ATP-dependent RNA helicase DDX10 [Mus musculus]
 gi|76364168|sp|Q80Y44|DDX10_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
          Length = 875

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 10/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + ++L+ +VLDEAD +LD+GF D +  I+++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   KD   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLF 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN--ALQMMRDGR 294
           + LR H  K +IVF S+   V    +V       +  L+    QQ+             R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF-VIPQNMQ 353
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++  ++P   Q
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQ 425

Query: 354 RRAERLF-REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
              ++L  ++  V  +      +  ++++    + QD    +  Q      +  +    D
Sbjct: 426 GMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSVYLMKD 485

Query: 413 PE 414
            E
Sbjct: 486 KE 487


>gi|90083495|dbj|BAE90830.1| unnamed protein product [Macaca fascicularis]
          Length = 478

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 166/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPAD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K   +  +      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPEPNIIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNKKIERLDTDDLDEIEK 475


>gi|226487072|emb|CAX75401.1| putative ATP-dependent RNA helicase DDX5 [Schistosoma japonicum]
          Length = 647

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/341 (32%), Positives = 172/341 (50%), Gaps = 5/341 (1%)

Query: 34  DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRE 93
            L  +DV+  AQTGSGKT  F L     ++A+  R      P+ L + PTRELA QV   
Sbjct: 2   ALSGRDVVGIAQTGSGKTATFLLPAVIHIMAQ-PRLLRNEGPICLVLVPTRELAQQVLSV 60

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            +       +      GG +   + R++Q G  I + TPGRL D IR +   +S +  +V
Sbjct: 61  AKEFADAASLRAICFYGGSAKGTQLREMQKGGEICIATPGRLIDFIRVQRNLLSRVTYLV 120

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN 213
           LDEAD MLD+GF   I  IL      R+ LM+SAT    + TLA+ +  D ++VNI S +
Sbjct: 121 LDEADRMLDMGFEPQIRKILSHVRPDRQTLMWSATWPKEVQTLAREFLTDYIQVNIGSVS 180

Query: 214 -RQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
              + +I     ++    ++  ++ +L   G    +VF  T+    + T  L    F V 
Sbjct: 181 LHANPNITQIVEIMDDWRKEQRLIELLSSFGRSRTLVFVETKRRTDQLTNSLRRRGFYVE 240

Query: 273 ALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
           A+ G   Q++R   L   + GR  + IATDVA+RG+D+ ++E V++ +  +  E+ +HR 
Sbjct: 241 AMHGGKQQRDRELTLASFKSGRMNILIATDVASRGLDIDNIEYVVNFDFPNQTEDYIHRI 300

Query: 333 GRTGRAGRKGMSVFVIPQNMQRRAERLFR---EANVSVVWE 370
           GRT R+ ++G +         R+A  L     EAN  +  E
Sbjct: 301 GRTARSDKRGTAFTFFTYKNARQARDLIEILDEANQEITPE 341


>gi|113197617|gb|AAI21215.1| zinc responsive protein Zd10A [Xenopus (Silurana) tropicalis]
          Length = 479

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 158/391 (40%), Gaps = 17/391 (4%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     +   +   G+   + +QE  L   L +  ++++  +Q+G+GKT AF L
Sbjct: 92  VKSFEKLHLKDELLRGIYAMGFNRPSKIQENALPMMLADPPQNLIAQSQSGTGKTAAFVL 151

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VSVH 115
           A+ S +       +  + P  + ++PT ELA+Q G+ +E +      +  +         
Sbjct: 152 AMLSRVD------AKKTYPQCMCLSPTFELALQTGKVVEEMGKFCNGIKVIYAVRGNRPG 205

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           +  +          GT    C  +R   +    +  +   +    +       +      
Sbjct: 206 KGTQIEAQIVIGTPGTVLDWCFKLRLINVKNISVFVLDEADVMINVQGHSDHSVRVKRSM 265

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           +      +      E    +   +         + +A+
Sbjct: 266 PKTCQMLLFSATFGDSVWAFAERIVPDPNIIKLKKEELTLDNIQQFYDKCENKEQKYSAL 325

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        AIVFC TR   +  ++ + E   QV  LSGELS  +R+  +Q  R+G+ 
Sbjct: 326 CNMYGIITIAQAIVFCQTRKIANWLSRHMLEDGHQVALLSGELSVCDRAEMIQRFREGKD 385

Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNP------ENLLHRSGRTGRAGRKGMSVFVIP 349
           +V + T+V ARGID+  + +V++ +L  N       E  LHR GRTGR G+KG++V +I 
Sbjct: 386 KVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVNLIE 445

Query: 350 QNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            +     + +       +    +   + + +
Sbjct: 446 NSFVYMLKEIEEHFTTKIKKLNSWDFDEMEK 476


>gi|197099748|ref|NP_001126779.1| eukaryotic initiation factor 4A-I [Pongo abelii]
 gi|73621051|sp|Q5R5F5|IF4A1_PONAB RecName: Full=Eukaryotic initiation factor 4A-I; Short=eIF-4A-I;
           Short=eIF4A-I; AltName: Full=ATP-dependent RNA helicase
           eIF4A-1
 gi|55732624|emb|CAH93011.1| hypothetical protein [Pongo abelii]
          Length = 406

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 107/375 (28%), Positives = 188/375 (50%), Gaps = 8/375 (2%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  +   ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA-VLVALSDRDNAIVNILRYHG 243
            SAT+   +  + K + +D +R+ +  E      I      +     + + + ++     
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLT 271

Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
              A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I TD+
Sbjct: 272 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL 331

Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREA 363
            ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +    
Sbjct: 332 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 391

Query: 364 NVSVVWEPAPSVEAI 378
           N S+   P    + I
Sbjct: 392 NTSIEEMPLNVADLI 406


>gi|149567279|ref|XP_001507308.1| PREDICTED: similar to DEAD Box Protein 5, partial [Ornithorhynchus
           anatinus]
          Length = 472

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 162/392 (41%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 84  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 143

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 144 AMLSQVEPLN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 197

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  ++      GT    C  ++        +  +   +            I      
Sbjct: 198 RGQKVSEHIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 257

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      +      E    +   Y  +     ++  A+
Sbjct: 258 PRDCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCSNRDEKFQAL 317

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR +       L+    QV  LSGE+  ++R+  ++  R G+ 
Sbjct: 318 CNLYGAITIAQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMMVEQRAAVIERFRAGKE 377

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V +I 
Sbjct: 378 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMID 437

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 438 SKHSMNILNRIQEHFNKKIDRLDTDDLDEIEK 469


>gi|197101741|ref|NP_001127671.1| ATP-dependent RNA helicase DDX19A [Pongo abelii]
 gi|55733629|emb|CAH93491.1| hypothetical protein [Pongo abelii]
          Length = 478

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 165/392 (42%), Gaps = 18/392 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 90  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL 149

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   +        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 150 AMLSRVEPSD------RYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 203

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 204 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 263

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 264 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 323

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 324 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 383

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 384 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 443

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIRE 380
            ++      R+    N  +       ++ I +
Sbjct: 444 SKHSMNILNRIQEHFNRKIERLDTDDLDEIEK 475


>gi|223674095|pdb|3G0H|A Chain A, Human Dead-Box Rna Helicase Ddx19, In Complex With An Atp-
           Analogue And Rna
          Length = 424

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 18/391 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 40  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 100 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 153

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 154 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 213

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 214 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 273

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 274 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 333

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 334 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 393

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
            ++      R+    N  +       ++ I 
Sbjct: 394 SKHSMNILNRIQEHFNKKIERLDTDDLDEIE 424


>gi|211939444|pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
 gi|211939445|pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
          Length = 445

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 18/391 (4%)

Query: 1   MKIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE +     + + +   G+   + +QE  L   L E  ++++  +Q+G+GKT AF L
Sbjct: 61  VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV-VVAVCIGGVSVH 115
           A+ S +   N        P  L ++PT ELA+Q G+ +E +        +A  + G  + 
Sbjct: 121 AMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 174

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
           R ++  +       GT    C  ++        +  +   +            I      
Sbjct: 175 RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 234

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
               + +L  +           K      V      E    +   Y  +  +  ++  A+
Sbjct: 235 PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 294

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            N+        A++FC TR + S     L++   QV  LSGE+  ++R+  ++  R+G+ 
Sbjct: 295 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE 354

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVI- 348
           +V + T+V ARGID+  + +VI+ +L        + E  LHR GRTGR G++G++V ++ 
Sbjct: 355 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 414

Query: 349 PQNMQRRAERLFREANVSVVWEPAPSVEAIR 379
            ++      R+    N  +       ++ I 
Sbjct: 415 SKHSMNILNRIQEHFNKKIERLDTDDLDEIE 445


>gi|164419743|ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
 gi|19110894|gb|AAL85336.1|AF478457_1 ATP-dependent RNA helicase [Homo sapiens]
 gi|119618445|gb|EAW98039.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_a [Homo
           sapiens]
          Length = 882

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 601


>gi|1142710|gb|AAC50823.1| similar to DEAD box RNA helicases [Homo sapiens]
 gi|1589113|prf||2210303A RNA helicase
          Length = 875

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 11/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + + L+ +VLDEAD +LD+GF D +  ++++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V         ++AL G   Q  R          R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ ++  + + 
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKA 425

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHD 412
             ++L ++  V V      P      ++  + IL QD    +  Q      V  +    D
Sbjct: 426 MVQQLLQK-KVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484

Query: 413 PE 414
            E
Sbjct: 485 KE 486


>gi|91223036|ref|ZP_01258302.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
 gi|91191849|gb|EAS78112.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
           alginolyticus 12G01]
          Length = 412

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 122/411 (29%), Positives = 191/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +  +   T +Q   +   L  +D+L  A TGSGKT+A+GL L   L   
Sbjct: 7   SLSSELIHALPK-DFKKPTYIQALAIPELLAGQDLLALANTGSGKTLAYGLPLLEKLGVN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
            ++        AL + PTRELA+QV   +  +     +      GGV   ++++ L    
Sbjct: 66  PEQ-------KALILVPTRELAMQVSEAINQVGQVLELNAVCLCGGVDKEQQQQALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI+V T GRL D       ++S++  +VLDEAD +LD+GF  D++ I      +R+  MF
Sbjct: 119 HILVATTGRLVDLANNGL-DLSNIHYLVLDEADRLLDMGFWPDVQNIAGLISNQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S  +   AK       +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSDELKGKAKLLMPAPKQVAAHQENSTNQDIAETLYLVNKGSKTKALIELIQKNAWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
            A+VF   + +     K L +      AL G  SQ ER  AL   + G+ +V IATD+ A
Sbjct: 238 QALVFIGAKENADGLAKKLNKAGISTNALHGNKSQDEREEALAQFKSGQIQVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL------ 359
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G++V ++          +      
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAVSLVCHGEMDALSAIRHLTQR 357

Query: 360 ----FREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
                  A   V  +P+   S  A R++ A R       +   QG  K+  
Sbjct: 358 ALPVQDLAGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQFQGKSKRPA 408


>gi|68063293|ref|XP_673656.1| ATP-dependent helicase [Plasmodium berghei strain ANKA]
 gi|56491666|emb|CAH95329.1| ATP-dependent helicase, putative [Plasmodium berghei]
          Length = 525

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 116/410 (28%), Positives = 181/410 (44%), Gaps = 35/410 (8%)

Query: 4   FENIPQV---IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           F +IPQ+   I + L  +G   +T +Q     P     D++  ++TGSGKT+AF L L  
Sbjct: 1   FSSIPQINQKIVDFLETKGIKYMTKIQSKSFMPIYEGNDIIGRSETGSGKTLAFALPLVE 60

Query: 61  TL---------------------------LAENDRFSPASAPLALAIAPTRELAVQVGRE 93
            L                               +  S    P  L + PTREL+ QV   
Sbjct: 61  KLYKNMESKKKIIKNKSNEINSIQHLSEGHKNENTDSMDKYPYILVLEPTRELSKQVETT 120

Query: 94  LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
            + +       +    GG S   +   L+ G  I+ GTPGR+ DHI  K L++ ++K VV
Sbjct: 121 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIQILTGTPGRIIDHIEKKNLSLKNIKYVV 180

Query: 154 LDEADEMLDLGFRDDIEFILDSSPKKRRML--MFSATISPAITTLAKNYQKDAVRVNIAS 211
           LDEADEML+LGF  DIE IL     K   +    + T S      +K  +       I +
Sbjct: 181 LDEADEMLNLGFTHDIERILSYINIKDAQVLLYSATTPSWIKDISSKYLKNPIYIDVINT 240

Query: 212 ENRQHSDIDYRAVLVALSDRDNAIVNILR---YHGAKNAIVFCSTRASVSRFTKVLAEHL 268
            N+    I + A+      ++ A++              I+F  T+          + + 
Sbjct: 241 INKTSKTIQHIAIKTPYDIKEKAMLLEDIILVKSNGGQVIIFTRTKLEADILCSEGSFNY 300

Query: 269 FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENL 328
                L G ++Q  R + +Q  R G  +V IATD+AARG+D+ +++LVI     + P   
Sbjct: 301 LTFSVLHGNIAQSTREHTMQRFRSGMFQVLIATDIAARGLDISNVDLVIQCYPPTYPAIY 360

Query: 329 LHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAI 378
           +HRSGRTGRA +KGMS+ +     +    ++ +   +    E  P+ E +
Sbjct: 361 IHRSGRTGRANKKGMSIVLFSNEDKNDVIKIEKNCGIKFTTESLPNNEQV 410


>gi|167385227|ref|XP_001737255.1| ATP-dependent RNA helicase DDX55 [Entamoeba dispar SAW760]
 gi|165899983|gb|EDR26453.1| ATP-dependent RNA helicase DDX55, putative [Entamoeba dispar
           SAW760]
          Length = 499

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 193/412 (46%), Gaps = 26/412 (6%)

Query: 1   MKIFENIPQVIGE----ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGL 56
           M  FE     + +     + E G++  T VQ+ ++   L  KDV+V +QTGSGKT++F +
Sbjct: 2   MSEFEQFHPSLRKETIDTIKEFGFIKPTEVQKVVIPAFLNRKDVIVQSQTGSGKTLSFLI 61

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
            L   +  E +          + I+PTRELA Q+    +       + + +  GG+ + +
Sbjct: 62  PLFEIIKREREIIE-KKEVYGIIISPTRELAHQIYDITKVFCKHFNMTIGLLTGGIDISK 120

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADEMLDLGFRDDIEFILD 174
              +++ GA+I+VGT GR+ + I  K      ++++ ++LDE D+M+++GF   I  I+ 
Sbjct: 121 LEEEMKKGANIIVGTAGRIEEVITNKLFELEWNNVEVLILDEGDKMIEMGFSQSITHIIC 180

Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA 234
             PK+RR  +FSAT+   +        ++  ++ I+++      +     ++    +   
Sbjct: 181 HLPKQRRTGLFSATMPKELNKFIIAGCRNPYKIQISNDTLTPISLANEYCIIPYEIKIQT 240

Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVA--------LSGELSQQERSNA 286
           ++ IL+    K  ++F  T   V+    ++     +           + G++ Q  R   
Sbjct: 241 LIRILKDSKDKKIVIFVLTCDQVNYIYNIIKILHQEEGYLKEKEIFSIHGKVKQINRDKV 300

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
           ++   +    + I TD+ ARG+D  ++  +I  +   +P+  +HR GRT R G  G S+ 
Sbjct: 301 IKKFEESLEAILICTDILARGMDFNNINYIIQYDPPQDPKTYIHRVGRTARMGSIGHSLI 360

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQG 398
            +   +++    L  + NV ++ +         ERD +   ++  + + I+ 
Sbjct: 361 FLSP-LEKSFILLMEKKNVKIIEKKI-------ERDKE---EEKYYFNKIRE 401


>gi|153827809|ref|ZP_01980476.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
 gi|148876654|gb|EDL74789.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae
           623-39]
          Length = 428

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 120/404 (29%), Positives = 193/404 (47%), Gaps = 21/404 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL +      T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L    
Sbjct: 30  LSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERLKTSP 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+QV   L  +    G+      GGV    ++  L    +
Sbjct: 89  EQ-------QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKAEQQNALAENPN 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V T GRL D  +     ++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M S
Sbjct: 142 ILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTATVRQTVMCS 200

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +   A+   +   +V+   EN  +  +     LV    +  A+V +L+ H    
Sbjct: 201 ATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQ 260

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD+ AR
Sbjct: 261 VLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLAR 320

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FRE 362
           GI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++          +     R+
Sbjct: 321 GIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQ 380

Query: 363 A------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQG 398
                     V  +P+   S  A R++ A R  Q+   +   QG
Sbjct: 381 LPVQNLDGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQG 424


>gi|332767614|gb|EGJ97807.1| ATP-dependent RNA helicase, specific for 23S rRNA [Shigella
           flexneri 2930-71]
          Length = 430

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 185/363 (50%), Gaps = 10/363 (2%)

Query: 23  LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
           +T VQ A L   L  KDV V A+TGSGKT AFGL L   +       +      AL + P
Sbjct: 1   MTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQID------ASLFQTQALVLCP 54

Query: 83  TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL-QNGAHIVVGTPGRLCDHIRG 141
           TRELA QV  EL  L         + + G      +RD  Q+  HI+V TPGRL DH++ 
Sbjct: 55  TRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQK 114

Query: 142 KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ 201
             +++  L  +V+DEAD MLD+GF D I+ ++  +P  R+ L+FSAT   AI  ++   Q
Sbjct: 115 GTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQ 174

Query: 202 KDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFT 261
           +D + + I S +             +   +   +  +L  H   + +VFC+T+       
Sbjct: 175 RDPLAIEIDSTDALPPIEQQFYE-TSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVC 233

Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
             L E      ALS     ++R   L    +G ARV +ATDVAARG+D+  LELV++ EL
Sbjct: 234 DALNEVEQ--SALSLHGDLEQRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFEL 291

Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRER 381
           + +PE  +HR GRT RAG  G+++        +RA  +     + + W+  P+  +I   
Sbjct: 292 AWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTL 351

Query: 382 DAQ 384
           +A+
Sbjct: 352 EAE 354



 Score = 52.7 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 411 HDPEKIAAGFLRIHRAG-------LCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNF 463
            DPE       R  RAG        CAPEE    +++S   + + + +            
Sbjct: 293 WDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLE 352

Query: 464 KGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR 523
              +   +  G K K     ++  L    G++   IG I V P   +V V         +
Sbjct: 353 AEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWK 412

Query: 524 TVKLDK 529
            ++  K
Sbjct: 413 QLQGGK 418


>gi|50309183|ref|XP_454597.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74660391|sp|Q6CN92|SPB4_KLULA RecName: Full=ATP-dependent rRNA helicase SPB4
 gi|49643732|emb|CAG99684.1| KLLA0E14367p [Kluyveromyces lactis]
          Length = 596

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 192/438 (43%), Gaps = 22/438 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
            I   I  A+   G+  +T VQ + +      KDV+V + TGSGKT+AF + +   L+ E
Sbjct: 13  EIQPWIRTAIESMGFETMTPVQASTIPLFSGNKDVVVESVTGSGKTIAFVIPILERLIKE 72

Query: 66  --NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG--------VSVH 115
             N      S   +L I+PTRELA Q+   +E         +                  
Sbjct: 73  EANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYPDNLYPIRSQLLVGTSSASVRD 132

Query: 116 RERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
                  N   I+VGTPGR+ D ++   +  +    VVLDEAD++LDL F+ D+E IL  
Sbjct: 133 DINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGTVVLDEADKLLDLNFQKDVETILKM 192

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
            PK+RR  +FSATI  A   + K   ++ V+V + S +   S +    +++   D+   +
Sbjct: 193 LPKQRRTGLFSATIESAGAQIFKTGMRNPVKVAVKSNSSAPSSLSINYIVIPPKDKLQLL 252

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAE---------HLFQVVALSGELSQQERSNA 286
           + +L  +  K  IV+  T  SV+ F   +            L          +Q      
Sbjct: 253 LTLLNNYRFKKCIVYFPTCISVTYFYAFINHLKELNLIQDDLKLFSLHGKLQTQSRMKTL 312

Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVF 346
                +    V   TDVAARGID+PD++LVI  +  ++ +  +HR GRTGRA R G ++ 
Sbjct: 313 DSFTSNLTDAVLFTTDVAARGIDIPDVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALV 372

Query: 347 VIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDV 406
            + +  +          NV +  E   SVE     +  +I  D +  D  + D      V
Sbjct: 373 FLNEGREEDYVPFLEVKNVKLEEE---SVELKGVENLTKIFHDWILHDRARFDHSVRAYV 429

Query: 407 LLAKHDPEKIAAGFLRIH 424
              K+  +  A+   R H
Sbjct: 430 AFIKYYSKHTASSIFRFH 447


>gi|86147794|ref|ZP_01066101.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
 gi|85834432|gb|EAQ52583.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
           MED222]
          Length = 412

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/351 (33%), Positives = 190/351 (54%), Gaps = 6/351 (1%)

Query: 20  YVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79
           +   T +Q+A++   + EKDVL  AQTGSGKT+AFGL L +++  +       +   A+ 
Sbjct: 20  FNKPTEIQQAVIPTIIAEKDVLALAQTGSGKTLAFGLPLLNSIKHD------VNELQAII 73

Query: 80  IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI 139
           I PTRELA QV + LE +     +      GGV +  +++ L     +V+ TPGRL   I
Sbjct: 74  IVPTRELASQVAKALEPIATTLDIKTVTLTGGVDIEIQQQQLLEKPQLVIATPGRLHAVI 133

Query: 140 RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKN 199
           +   L ++  K+++LDEAD +LD+GF  D++ I+ + PKK + L+FSAT+   + +  + 
Sbjct: 134 QENKLELTQCKSLILDEADRLLDMGFWPDVQTIISALPKKHQTLLFSATLPKELISQTEA 193

Query: 200 YQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSR 259
              + V+V    EN   + I+    LV    +  A++ +L  H     +VF   + +   
Sbjct: 194 LLVNPVKVTTHQENSVVAAIEETLYLVNKGSKAQALIALLNQHAWSQVLVFIGAKDNADA 253

Query: 260 FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
            TK L++    V AL G  SQ+ER  AL+  ++G+ RV IATDV ARGI +  L +VI+ 
Sbjct: 254 LTKRLSKAKISVNALHGNKSQEEREQALESFKNGKTRVLIATDVMARGIHIDQLPVVINF 313

Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWE 370
           +L S+    +HR GRT RAG  G ++ ++  +       +    N  ++ +
Sbjct: 314 DLPSHSATYVHRVGRTARAGSTGSAISLVSHSETDYLNAIRTLTNKPLMLQ 364


>gi|290959211|ref|YP_003490393.1| ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
 gi|260648737|emb|CBG71850.1| putative ATP-dependent RNA helicase [Streptomyces scabiei 87.22]
          Length = 765

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 131/446 (29%), Positives = 215/446 (48%), Gaps = 12/446 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +P+ +   L++ G      +Q A +   L  KD+L   +TGSGKT++FGL L + L    
Sbjct: 42  LPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPLLAQL---A 98

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              +    P  + + PTRELA+QV   L+      G+ + V  GG S+  +   L+ G  
Sbjct: 99  GGHTERKKPRGVILTPTRELAMQVADALQPYGDVLGLKMKVVCGGTSMGNQIYALERGVD 158

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V TPGRL D I     ++ + +  VLDEAD+M DLGF  ++  +LD  P   + ++FS
Sbjct: 159 ILVATPGRLRDIINRGACSLENTQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQRMLFS 218

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT+   I+TL K Y  + V   + S     + + +  ++V    +D A V          
Sbjct: 219 ATMENEISTLVKRYLSNPVTHEVDSAQGNVTTMSHHILIV--KPKDKAPVTAAIASRKGR 276

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            I+F  T+    R  + L +   +  AL G ++Q  R+  L   +DG     +ATDVAAR
Sbjct: 277 TIIFVRTQLGADRIAEQLRDSGVKADALHGGMTQGARTRTLADFKDGYVNALVATDVAAR 336

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVS 366
           GI +  ++LV++ + + + ++ LHRSGRT RAGR G  V +   + +R+  RL  +A V 
Sbjct: 337 GIHVDGIDLVLNVDPAGDHKDYLHRSGRTARAGRSGTVVSLSLPHQRRQIFRLMEDAGVD 396

Query: 367 VVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVD--VLLAKHDPEKIAAGFLRIH 424
                     A    D +  + D     S+   + + VD     A+ +  ++     R+ 
Sbjct: 397 ASRHIIQGGTAF---DTE--VADITGARSMTEVQAESVDNAAQQAEREVAQLTKELERVT 451

Query: 425 RAGLCAPEEITPVSLVSGRDRFRDDS 450
           R      +E T ++  + R+R  D  
Sbjct: 452 RRAAELRDEATRLTARAARERGEDPE 477


>gi|168059571|ref|XP_001781775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666777|gb|EDQ53423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 432

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 51  LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVA 110

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 111 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNEC 164

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++  ++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 165 PHIVVGTPGRILGLARDKDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVM 224

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++  +++  + ++L   
Sbjct: 225 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEVEKNRKLNDLLDAL 284

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  + +  +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 285 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATD 344

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +          ++  
Sbjct: 345 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAPDSNVLNQVQE 404

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 405 RFEVDIKELP 414


>gi|323465937|gb|ADX69624.1| ATP-dependent helicase (DEAD/DEAH box family) [Lactobacillus
           helveticus H10]
          Length = 453

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 185/386 (47%), Gaps = 12/386 (3%)

Query: 2   KIFEN--IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
            IF +  I   I E L +  +   T VQE ++   L +  V+V A TGSGKT A+ + + 
Sbjct: 3   NIFADSRIKPAIQEGLKKIHFEKPTKVQEKVIPAMLSDLSVVVQAATGSGKTHAYLVPIF 62

Query: 60  STLLAENDRFSPASAPLALAIAPTRE---LAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           + +  +      A    A+   P+RE      QV R+L         +  +  G     +
Sbjct: 63  NEIDED------AHYVQAIVTLPSRELADQLYQVARQLRDAAEMHFSIAHLAGGTDRERQ 116

Query: 117 ERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
             +   N   +V+ TPGRL D ++ K   +  +K  V+DEAD  LD+GF  DI+ +    
Sbjct: 117 LEKYQNNTPQLVIATPGRLLDFVQKKVFVVDQVKTFVIDEADMTLDMGFLADIDQVASKM 176

Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236
           PK  ++  FSATI   ++   + Y     ++ I + +     I    + +   +R + + 
Sbjct: 177 PKDVQIAAFSATIPVKLSNFLRKYMAHPDQIVIDNPSIIAPTIKNDLLDIGSKNRKSVLY 236

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRAR 296
            +L       A+VF +T+ +V   T+ L +   +V  + G ++++ER   L+ +  G+ +
Sbjct: 237 KLLTMGQPYLALVFANTKQTVDELTRYLQDQGLKVAKIHGGVTERERKRTLRQVEQGQFQ 296

Query: 297 VCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
             +A+D+AARG+D+  + LVI+ E+  + E ++HR GRTGR G  G ++ +I +    R 
Sbjct: 297 YVVASDLAARGLDIDGVSLVINYEIPRDIEFVIHRIGRTGRNGLSGHAITLIREEEMNRI 356

Query: 357 ERLFREANVSVVWEPAPSVEAIRERD 382
           E L +   V   +    + E +  + 
Sbjct: 357 EDLEK-MGVHFDFVEIKNGELVPRKH 381


>gi|147672130|ref|YP_001215089.1| DEAD-box ATP dependent DNA helicase [Vibrio cholerae O395]
 gi|146314513|gb|ABQ19053.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
 gi|227015635|gb|ACP11844.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
          Length = 428

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 192/404 (47%), Gaps = 21/404 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL +      T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L    
Sbjct: 30  LSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERLKTSP 88

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+QV   L  +    G+      GGV    ++  L    +
Sbjct: 89  EQ-------QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAENPN 141

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V T GRL D  +     ++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M S
Sbjct: 142 ILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCS 200

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +    +   +   +V+   EN  +  +     LV    +  A+V +L+ H    
Sbjct: 201 ATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQ 260

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD+ AR
Sbjct: 261 VLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLAR 320

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FRE 362
           GI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++          +     R+
Sbjct: 321 GIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQ 380

Query: 363 A------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQG 398
                     V  +P+   S  A R++ A R  Q+   +   QG
Sbjct: 381 LPVQNLDGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQG 424


>gi|262169246|ref|ZP_06036939.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
 gi|262022527|gb|EEY41235.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
          Length = 406

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 119/404 (29%), Positives = 192/404 (47%), Gaps = 21/404 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +AL +      T++Q  ++   L  KDVL  A TGSGKT+A+GL L   L    
Sbjct: 8   LSADLIQALPKA-ITEPTAIQTLVIPAMLTGKDVLALANTGSGKTLAYGLPLLERLKTSP 66

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
           ++        AL + PTRELA+QV   L  +    G+      GGV    ++  L    +
Sbjct: 67  EQ-------QALVLVPTRELAMQVSEVLTQVGTPLGLNTLCLCGGVDKTEQQNALAENPN 119

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I+V T GRL D  +     ++ +  +VLDEAD +LD+GF   ++ +   +   R+ +M S
Sbjct: 120 ILVATTGRLFDLTQSGL-RLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMCS 178

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN 246
           AT S  +    +   +   +V+   EN  +  +     LV    +  A+V +L+ H    
Sbjct: 179 ATFSDDLKLKTQQLMRVPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLKQHQWPQ 238

Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
            +VF   + +    TK L +      AL G+ SQ ER  AL   ++G  +V IATD+ AR
Sbjct: 239 VLVFIGAKENADSLTKKLNKAGIVATALHGDKSQSEREAALAEFKNGSTQVLIATDLLAR 298

Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL----FRE 362
           GI +  L +VI+ EL  + E  +HR GRT RAG++G+++ ++          +     R+
Sbjct: 299 GIHIEQLPVVINFELPMHAETYVHRVGRTARAGQQGIALSLVCHGEMDALNAIRTLTQRQ 358

Query: 363 A------NVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQG 398
                     V  +P+   S  A R++ A R  Q+   +   QG
Sbjct: 359 LPVQNLDGFPVTDQPSTGESKRAPRDKQANRRTQNKKSVKQFQG 402


>gi|28301751|gb|AAN59978.1| DEAD box RNA helicase DP97 [Homo sapiens]
 gi|119618446|gb|EAW98040.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_b [Homo
           sapiens]
          Length = 865

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 87  LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 145

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 146 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 202

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 203 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 262

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 263 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQ 322

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 323 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 382

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 383 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 442

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 443 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 488

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 489 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 541

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 542 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 585


>gi|320164192|gb|EFW41091.1| nucleolar RNA helicase 2 [Capsaspora owczarzaki ATCC 30864]
          Length = 793

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/415 (28%), Positives = 186/415 (44%), Gaps = 22/415 (5%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           +K F  +       L  +G   L  +Q    +P    KD++  A+TGSGKT++F L +  
Sbjct: 197 LKNF-GVSATSIANLHAQGIRTLFPIQAQTYHPIFEGKDIVAQARTGSGKTLSFALPVIE 255

Query: 61  TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
            LL +N R     AP  L +APTRELA QV R  E +  +   +     GGV    +   
Sbjct: 256 RLL-KNPRSEKGRAPAVLVMAPTRELASQVHRVFESVAPQLASIC--VYGGVEYGPQELA 312

Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
           ++ G  +VVGTPGRL DH     L++  +  ++LDEAD ML++GF+++++ I+   P   
Sbjct: 313 MRKGLDVVVGTPGRLIDHYNRGNLSLRSIDVMILDEADRMLEVGFQENVDEIMAGLPIGD 372

Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI----- 235
                    +   T +    +K      +  +    +D      +  L+ R         
Sbjct: 373 AKPRILLFSATMPTWVKALTKKYQREDKVMVDLVSGTDQQTSTTIQHLAIRCPWQERANA 432

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
              V  +        +VF ST+   +             V   G+++Q++R   L   R 
Sbjct: 433 IGDVVRVYSGSHGRCMVFASTKEEANDLALNGRIAGETHVLH-GDIAQKQREITLAGFRS 491

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
           G+ R  +ATDVAARG+D+P++ELVI  E   + E  +HR+GRTGRAG+ G  +       
Sbjct: 492 GKFRCLVATDVAARGLDIPEVELVIQTEPPIDVETYIHRAGRTGRAGKSGTCILFYKPQQ 551

Query: 353 QRRAERLFREANVSVVWEPAPSVEAI---RERDAQRILQD------PLFLDSIQG 398
           +    R+  +A ++      P  + I      DA R L        PLF  + + 
Sbjct: 552 ESLVRRIEGKARMAFKRIGPPQPQDIVSASANDAARSLAKVSPAVYPLFHQAAEE 606


>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 495

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 195/387 (50%), Gaps = 27/387 (6%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE- 65
           + + +   ++  G+V  T +Q ++L   +  +DV  SA TGSGKT AF L +   +L   
Sbjct: 9   LSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPVMERILQRG 68

Query: 66  -----------NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG-VS 113
                        + S  +A  AL + PTRELA Q    +  +   T +  A+ +GG  +
Sbjct: 69  GGRTTMGGLNAKRKASALAATRALVLTPTRELAAQCVSMMTAMAKFTDLRAALIVGGAKN 128

Query: 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKG-LNISHLKAVVLDEADEMLDLGFRDDIEFI 172
           V  +  +L++   +VV TPGRL DHI     +++  L+ ++LDEAD +LDLGF+D++  I
Sbjct: 129 VMSQAAELRSRPDVVVATPGRLLDHITNSQGVDLDDLEFLILDEADRLLDLGFQDEVHEI 188

Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-------------SDI 219
           + + P +R+ L+FSAT+S  +  L K   K  VRV    + ++               + 
Sbjct: 189 VKACPTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEKGKKDNAPTGVEVAPRLEQEF 248

Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELS 279
                     +R+  ++ +L        IVF  T+++  R   V      +   L G L+
Sbjct: 249 VRIRAGNEGVNREGMLLALLTRTFTSRVIVFFDTKSAAHRLMIVCGLCGIKCTELHGNLT 308

Query: 280 QQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAG 339
           Q +R  AL+  R+G   V +ATD+AARG+D+P +E VI+ E+ S  +  +HR GRT RAG
Sbjct: 309 QVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFEMPSQVDTYVHRIGRTARAG 368

Query: 340 RKGMSVFVIPQNMQRRAERLFREANVS 366
           R G S  +I +  +   + + ++A   
Sbjct: 369 RGGNSCTLIGEGRRYLMKEVIKDAEEK 395


>gi|218188673|gb|EEC71100.1| hypothetical protein OsI_02884 [Oryza sativa Indica Group]
          Length = 593

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 206/453 (45%), Gaps = 24/453 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           I  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L  L 
Sbjct: 132 ISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALP 191

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQ 122
            + R     +   L + PTRELA+QV  E + L        V  V  G      +R    
Sbjct: 192 NSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQA 251

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DH+         +  +K +VLDEAD +LD+GFR DIE I+ S PK+
Sbjct: 252 NPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKE 311

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---- 235
           R+ L+FSAT+   +  ++    K   +     ++         + +  ++  D       
Sbjct: 312 RQTLLFSATVPEEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQMFMIAPLDLHFSILY 371

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                 +        I+FC+T        ++L++    +  +    SQ  R+      R 
Sbjct: 372 DVLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRK 431

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            R  + +++DV+ARG+D PD+ LVI   + ++ +  +HR GRTGR G++G  + ++    
Sbjct: 432 SRGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWE 491

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +     +    ++S+     PSV++      Q I++D +    ++  E      L   + 
Sbjct: 492 KYFLSSI---KDLSISEATVPSVDS----STQTIVKDAVRKVEMRSKECAYQAWLGYYNS 544

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSG 442
            + I    +  +++      + E   P ++   
Sbjct: 545 NKTIGREKSRLVKLAEEFSQSMELSVPPAIPKQ 577


>gi|115438621|ref|NP_001043590.1| Os01g0618400 [Oryza sativa Japonica Group]
 gi|75322035|sp|Q5ZBH5|RH25_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 25
 gi|54290854|dbj|BAD61515.1| putative RNA helicase [Oryza sativa Japonica Group]
 gi|113533121|dbj|BAF05504.1| Os01g0618400 [Oryza sativa Japonica Group]
 gi|215695286|dbj|BAG90477.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618865|gb|EEE54997.1| hypothetical protein OsJ_02628 [Oryza sativa Japonica Group]
          Length = 594

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 122/453 (26%), Positives = 206/453 (45%), Gaps = 24/453 (5%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           I  +  +A+ + GY  +T VQEA L   L+ KDVL  A+TG+GKTVAF L     L  L 
Sbjct: 133 ISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALP 192

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV--VVAVCIGGVSVHRERRDLQ 122
            + R     +   L + PTRELA+QV  E + L        V  V  G      +R    
Sbjct: 193 NSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQA 252

Query: 123 NGAHIVVGTPGRLCDHIRG---KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
           N   I+V TPGRL DH+         +  +K +VLDEAD +LD+GFR DIE I+ S PK+
Sbjct: 253 NPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKE 312

Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI---- 235
           R+ L+FSAT+   +  ++    K   +     ++         + +  ++  D       
Sbjct: 313 RQTLLFSATVPEEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQMFMIAPLDLHFSILY 372

Query: 236 ---VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
                 +        I+FC+T        ++L++    +  +    SQ  R+      R 
Sbjct: 373 DVLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRK 432

Query: 293 GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352
            R  + +++DV+ARG+D PD+ LVI   + ++ +  +HR GRTGR G++G  + ++    
Sbjct: 433 SRGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWE 492

Query: 353 QRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD 412
           +     +    ++S+     PSV++      Q I++D +    ++  E      L   + 
Sbjct: 493 KYFLSSI---KDLSISEATVPSVDS----STQTIVKDAVRKVEMRSKECAYQAWLGYYNS 545

Query: 413 PEKIA---AGFLRIHRAGLCAPEEITPVSLVSG 442
            + I    +  +++      + E   P ++   
Sbjct: 546 NKTIGREKSRLVKLAEEFSQSMELSVPPAIPKQ 578


>gi|13514831|ref|NP_004389.2| probable ATP-dependent RNA helicase DDX10 [Homo sapiens]
 gi|76803554|sp|Q13206|DDX10_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX10; AltName:
           Full=DEAD box protein 10
 gi|11414894|dbj|BAB18536.1| RNA helicase [Homo sapiens]
 gi|60552874|gb|AAH91521.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739421|gb|AAH93654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|62739423|gb|AAH93656.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 [Homo sapiens]
 gi|119587526|gb|EAW67122.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10, isoform CRA_a [Homo
           sapiens]
 gi|189054819|dbj|BAG37650.1| unnamed protein product [Homo sapiens]
          Length = 875

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 11/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 68  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 127

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 128 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 185

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + + L+ +VLDEAD +LD+GF D +  ++++ PK
Sbjct: 186 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 245

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 246 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 305

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V         ++AL G   Q  R          R
Sbjct: 306 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 365

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ ++  + + 
Sbjct: 366 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKA 425

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHD 412
             ++L ++  V V      P      ++  + IL QD    +  Q      V  +    D
Sbjct: 426 MVQQLLQK-KVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 484

Query: 413 PE 414
            E
Sbjct: 485 KE 486


>gi|51094101|ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]
 gi|46576615|sp|Q8TDD1|DDX54_HUMAN RecName: Full=ATP-dependent RNA helicase DDX54; AltName:
           Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD
           box RNA helicase 97 kDa; AltName: Full=DEAD box protein
           54
 gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
          Length = 881

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 117/537 (21%), Positives = 214/537 (39%), Gaps = 45/537 (8%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + + + ++GY   T +Q   +   L  KDV+  A+TGSGKT  F L +   L    
Sbjct: 103 LSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKTH- 161

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S  +   AL ++PTRELA+Q  +  + L   TG+  A+ +GG  +  +   L     
Sbjct: 162 ---SAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPD 218

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           I++ TPGRL        L +  ++ VV DEAD + ++GF + ++ I+   P   + ++FS
Sbjct: 219 IIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVLFS 278

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA--IVNILRYHGA 244
           AT+   +   A+    + V + +  + + +  +     LV    +      +        
Sbjct: 279 ATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVRPQ 338

Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
              +VF +T+      T++L         +   L    R   L     G+    I TD+A
Sbjct: 339 DQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLA 398

Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
           ARG+D+P L+ VI+    +  +  LHR GR  RAGR G +  ++  +       L     
Sbjct: 399 ARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLG 458

Query: 365 VSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHD---PEKIAAGF- 420
            S+                 R L++P  +  + G   ++   ++ + D      + A   
Sbjct: 459 RSLT--------------LARPLKEPSGVAGVDGMLGRVPQSVVDEEDSGLQSTLEASLE 504

Query: 421 LR-IHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKA 479
           LR + R    A ++          +  +       VG G    F  SS F      +++ 
Sbjct: 505 LRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLF--SSRF-----EEEEL 557

Query: 480 EARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYL 536
           +   L+  +                +   T  E++A   DL  + ++  +    K +
Sbjct: 558 QRLRLVDSIKNY-------------RSRATIFEINASSRDLCSQVMRAKRQKDRKAI 601


>gi|171686908|ref|XP_001908395.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943415|emb|CAP69068.1| unnamed protein product [Podospora anserina S mat+]
          Length = 576

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/417 (23%), Positives = 180/417 (43%), Gaps = 36/417 (8%)

Query: 2   KIFENI--PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
             FE++     + ++L+       T++Q   +   L+ +D +  ++TGSGKTVAF + + 
Sbjct: 145 TTFESLGVRPWLVQSLANMAIKRPTAIQRESIPMLLKGRDCIGGSRTGSGKTVAFSVPIL 204

Query: 60  STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
                        SA   + + PTRELA+Q+  +++ + +   +   +  GG  +  +  
Sbjct: 205 QQWAENP------SAIFGVILTPTRELALQIFEQVKAISSPHSLKAILVTGGADMRAQAI 258

Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNIS----HLKAVVLDEADEMLDLG----FRDDIEF 171
            L    HIV+ TPGRL DHIR  G +       ++ VVLDEAD +L          D+E 
Sbjct: 259 ALAQRPHIVIATPGRLADHIRTSGYDTVCGLGRVRFVVLDEADRLLADNGPGSMLPDVEE 318

Query: 172 I---------LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYR 222
                       +      +      +        +                      + 
Sbjct: 319 CLSALPPAEKRQTLLFTATITQEVMALKNMPRKPGREPVFVCEVDTEKLAIPPTLKQMHL 378

Query: 223 AVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQE 282
            V V   +    +  +   +  K+ I+FC+  ++      +L     ++ +L  +L Q++
Sbjct: 379 QVPVTHREHYLHMFLLTEQNVHKSIIIFCNRTSTADFLHHLLRLLDHRITSLHSKLPQRQ 438

Query: 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
           R + L   R   AR+ +ATDVAARG+D+P++++VI+ ++  +P++ +HR GRT RAGRKG
Sbjct: 439 RIDNLGRFRASAARILVATDVAARGLDIPEVKMVINYDIPRDPDDYIHRVGRTARAGRKG 498

Query: 343 MSVFVIPQNMQRRAERLFREANVSVV-WEPA----------PSVEAIRERDAQRILQ 388
            +V  + Q        +       +  WE             +++ + E+  + +L+
Sbjct: 499 DAVTFVGQRDVDLVLAIEDRVGRKMEAWEEEGVNLETRVVREALKLVSEKKREALLE 555


>gi|145540724|ref|XP_001456051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124423861|emb|CAK88654.1| unnamed protein product [Paramecium tetraurelia]
          Length = 660

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 111/392 (28%), Positives = 196/392 (50%), Gaps = 29/392 (7%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTL--LA 64
           +P+ +  ++    YV  T +Q   +   L  KD++  A TGSGK+ AF + L + L  L 
Sbjct: 242 LPKNLMNSIRNLNYVKPTPIQMQTIPIGLERKDMIGIAPTGSGKSAAFLIPLITYLSTLP 301

Query: 65  ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG 124
           + D       P AL +AP RELA+Q+  E + L     +   V +GG     +   L+ G
Sbjct: 302 KQDDKICKDGPYALIMAPARELAIQIEAEFQKLSQGYNLRSFVIVGGRKEEEQEFHLKKG 361

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR--- 181
             I++GTPGR+ D +  K L +     +VLDEAD+M+DLGF  D+ +ILDS   + +   
Sbjct: 362 IEILIGTPGRIKDLLMKKYLVLEQCSWIVLDEADKMIDLGFEQDVNYILDSITTQMKSED 421

Query: 182 --------------------MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDY 221
                                 +FSAT+ P +  LAK Y +    ++I        DI+ 
Sbjct: 422 EIAAELEEKLAQAGERQYRVTHLFSATMPPQVEKLAKRYLRAFCFISIGEPGGGKKDIEQ 481

Query: 222 RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQ 281
           +  ++  + + N ++ +L  +     I F + + SV   +K L ++ +  V   G  +QQ
Sbjct: 482 KIDMINEAAKKNRLLQLLASNKPPIII-FANQKKSVEILSKTLEKYGYNSVVYHGSKTQQ 540

Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
           +R  A++  +  +  + IATD+A+RG+ +  +++VI+ +   N ++ +HR+GRTGRAG++
Sbjct: 541 QREAAVEGFKSKKIDILIATDLASRGLHVEGVQMVINFDAPKNIQDFIHRTGRTGRAGKR 600

Query: 342 GMSVFVIPQNMQ---RRAERLFREANVSVVWE 370
           G++V  +  +        +    ++  +V  E
Sbjct: 601 GLAVTFLTNSDSDLFYDLKEYLIKSGQNVPPE 632


>gi|62089354|dbj|BAD93121.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 variant [Homo sapiens]
          Length = 845

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/422 (26%), Positives = 191/422 (45%), Gaps = 11/422 (2%)

Query: 1   MKIFENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
           +  F + P  +   + L E  Y  +T +Q+  +   L+ KDVL +A+TGSGKT+AF + +
Sbjct: 78  ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 137

Query: 59  ASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
              L     +++       L I+PTRELA Q    L  +         + IGG  +  E 
Sbjct: 138 LEALY--RLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA 195

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
             + N   +V      L         + + L+ +VLDEAD +LD+GF D +  ++++ PK
Sbjct: 196 ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK 255

Query: 179 KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDRDNAIV 236
           KR+ L+FSAT + ++  LA+   K+   V +  + +  +        ++  L  + + + 
Sbjct: 256 KRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLY 315

Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLF--QVVALSGELSQQERSNALQMMRDGR 294
           + LR H  K +IVF S+   V    +V         ++AL G   Q  R          R
Sbjct: 316 SFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKR 375

Query: 295 ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQR 354
           A V  ATD+AARG+D P +  V+  +   +    +HR+GRT R    G ++ ++  + + 
Sbjct: 376 AAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKA 435

Query: 355 RAERLFREANVSVVWEPA-PSVEAIRERDAQRIL-QDPLFLDSIQGDEKKMVDVLLAKHD 412
             ++L ++  V V      P      ++  + IL QD    +  Q      V  +    D
Sbjct: 436 MVQQLLQK-KVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKD 494

Query: 413 PE 414
            E
Sbjct: 495 KE 496


>gi|16415782|emb|CAC87273.1| Dbp5 protein [Chironomus tentans]
          Length = 472

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 18/392 (4%)

Query: 1   MKIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
           +K FE  ++   +   +   GY N + +QE  L   + +  ++++  +Q+G+GKT AF L
Sbjct: 84  VKTFEALHLKPELLRGVYAMGYNNPSKIQETALPTLIADPPQNMIAQSQSGTGKTAAFTL 143

Query: 57  ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
           A+ + +    D       P  L ++PT ELA+Q G     +      +            
Sbjct: 144 AMLTRVDTAKD------FPQVLCLSPTYELAIQTGEVAARMAKFCPEIRIRYAVRGEDIA 197

Query: 117 ERRDLQNGAHIVVGTPGRLCDH-IRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDS 175
               L +   I                 L+   +  +   +            I      
Sbjct: 198 RGTKLTDHVIIGTPGKVLDWSLKFHAFDLSKITVFVLDEADVMIAQQGHQDQCIRLHKHL 257

Query: 176 SPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI 235
           S K + ML  +      +                  E    +   Y         +  AI
Sbjct: 258 SKKCQMMLFSATYEKKVMEFAEYIVPSPITIRLKKEEEVLDNIKQYYVRCPNQDIKYQAI 317

Query: 236 VNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRA 295
            NI        AI+FC TR +       +A+    V  LSGEL+ ++R   L   R+G  
Sbjct: 318 ANIYGVITIGQAIIFCHTRKTAGWLASKMAQEGHSVGVLSGELTVEQRLAVLDRFREGHE 377

Query: 296 RVCIATDVAARGIDLPDLELVIHAELS------SNPENLLHRSGRTGRAGRKGMSVFVIP 349
           +V I T+V +RGID+  + +V++ +L       ++ E  LHR GRTGR G+ G+++ ++ 
Sbjct: 378 KVLITTNVLSRGIDIEQVNIVVNFDLPVDQTGRADCETYLHRIGRTGRFGKHGIAINLVD 437

Query: 350 QNMQRRA-ERLFREANVSVVWEPAPSVEAIRE 380
                +    + R     ++   A + + I +
Sbjct: 438 SEQSMKVCRDIERHFGKKIMLLDAENSDEIEK 469


>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 863

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 130/561 (23%), Positives = 229/561 (40%), Gaps = 73/561 (13%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   + +A+ + GY   T +Q   +   L   DV+  A+TGSGKT AF + +  TL    
Sbjct: 30  LSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQTL---- 85

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
              S      A+ ++PTRELA+Q  +    L   T + + + +GG S+  +   L +   
Sbjct: 86  KGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPD 145

Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
           +++ TPGRL  H+    L++  ++ +V DEAD + ++GF DD++ IL ++P  R+ L+FS
Sbjct: 146 VLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATPPSRQCLLFS 205

Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV---------- 236
           AT+   +T  ++   +      I  +             +  +                 
Sbjct: 206 ATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAALISLLRKLQS 265

Query: 237 ----------------NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
                              +   +   IVF +TR +V  F  +L +       + G + Q
Sbjct: 266 MGNANADSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITNAPIYGSMDQ 325

Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
            +R+++L   R G+A V + TDVAARGID+P L+ VI+ +  S+ +  +HR GRT RAG 
Sbjct: 326 TQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHRCGRTARAGA 385

Query: 341 KGM------------SVFVI-------PQNMQRRAERLFR-EAN--VSVVWEPAP----- 373
           KG             +  +             RRA+ + R EA     ++  P P     
Sbjct: 386 KGXXGPRLDSRSMMSAYHLYYKTRPAASNQSVRRAKLILRAEAGGPQRLLDTPHPAFRTA 445

Query: 374 ------SVEAIRER-------DAQRILQDPLFLDSIQGDEKK-MVDVLLAKHDPEKIAAG 419
                 SVE ++E+        + R  Q P    S    + + M ++      P ++   
Sbjct: 446 ADLGSQSVEDVKEKLDMIAQLRSFRPSQQPKMAGSTTVIKPETMAEISQHVVAPRQLRHD 505

Query: 420 FLRIHRAGLCAPEEITPVSLVSGRDRFRDDS--RAFKVGGGSRDNFKGSSWFSLSVGSKQ 477
             ++ RA      +    S  S  +   +    +A +                LS  +++
Sbjct: 506 LKKMSRAKQQVEHQEGGESDDSEAEELENVEVAQAGEKRSLPIPQQADRQTHRLSKRARK 565

Query: 478 KAEARWLMPMLCRSSGINRQS 498
           K E    +P         ++S
Sbjct: 566 KLEKGGGLPQPGEEVDGRKKS 586


>gi|222622384|gb|EEE56516.1| hypothetical protein OsJ_05798 [Oryza sativa Japonica Group]
          Length = 648

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 169/372 (45%), Gaps = 6/372 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + +    
Sbjct: 187 SGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSH 246

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++N
Sbjct: 247 VRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIEN 306

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I  +    + M+
Sbjct: 307 GIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQVMM 366

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-VNILRYH 242
             +   S          +               S       + +   +     +   + H
Sbjct: 367 FSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQH 426

Query: 243 GAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               A+VF S+R         +      +VV++ G+ +  ER  +L+    G   V + T
Sbjct: 427 FKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVCT 486

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
            V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  + +  +   R   +
Sbjct: 487 GVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFRELVQ 546

Query: 359 LFREANVSVVWE 370
           + + A   +  E
Sbjct: 547 ILKTAGAPIPRE 558


>gi|218190271|gb|EEC72698.1| hypothetical protein OsI_06281 [Oryza sativa Indica Group]
          Length = 648

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 169/372 (45%), Gaps = 6/372 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + +    
Sbjct: 187 SGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSH 246

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++N
Sbjct: 247 VRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIEN 306

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I  +    + M+
Sbjct: 307 GIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQVMM 366

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-VNILRYH 242
             +   S          +               S       + +   +     +   + H
Sbjct: 367 FSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQH 426

Query: 243 GAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               A+VF S+R         +      +VV++ G+ +  ER  +L+    G   V + T
Sbjct: 427 FKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVCT 486

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
            V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  + +  +   R   +
Sbjct: 487 GVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFRELVQ 546

Query: 359 LFREANVSVVWE 370
           + + A   +  E
Sbjct: 547 ILKTAGAPIPRE 558


>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
 gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
           SB210]
          Length = 476

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 11/356 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++ Q +  ++ E G+   + VQ   +   +  KDVL  A+ G+GKT  F L++ + L  +
Sbjct: 44  SLKQDLLRSVKEAGFERPSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSVLNQLPDD 103

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVV-VAVCIGGVSVHRERRDLQNG 124
              FS       L +  TRELA Q+  E + L   T     AV  G              
Sbjct: 104 AKPFS------CLVLCHTRELAFQIKNEFKRLGKFTNFKVKAVYGGVEESVDIHTLKTKK 157

Query: 125 AHIVVGTPGRLCDHIRGKG--LNISHLKAVVLDEADEM-LDLGFRDDIEFILDSSPKKRR 181
            HI+V TPGR    I+ K   +   +++  ++DE D +      R D++ I    P+K++
Sbjct: 158 PHILVATPGRCLSLIKAKPSVIETQNIEYFIIDECDRVLSSNKMRSDVQNIFYELPRKKQ 217

Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILR 240
           ++MFS T+S       + + +D + + +   ++     ++   + +    + + +  +L 
Sbjct: 218 VMMFSGTMSDESKKTCRKFLQDQIEIFVEDNSKLVLHGLEQYHIKIEEKQKISVLRQLLD 277

Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
                  I+F + +      +K L +       +   L Q ER+      ++G+ RV +A
Sbjct: 278 QGNYNQVIIFVNKQDRAKYLSKYLTDKGHDNAFIYRNLDQSERTKIYSEFKEGKNRVLVA 337

Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA 356
           TD+  RGID+  + LVI+ ++    E+ +HR GR GR   KG ++  I      + 
Sbjct: 338 TDLVGRGIDIERVNLVINFDMPQITEDYMHRVGRAGRFETKGQAISFISTKEDEKV 393


>gi|143456026|sp|Q0E2Z7|RH41_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 41
 gi|46390396|dbj|BAD15860.1| putative DEAD box [Oryza sativa Japonica Group]
 gi|215701515|dbj|BAG92939.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767715|dbj|BAG99943.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 536

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 169/372 (45%), Gaps = 6/372 (1%)

Query: 5   ENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
             +P+ +   L   GYV  T VQ  ++   +  + +LVSA TGSGKT +F + + +    
Sbjct: 142 SGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSH 201

Query: 65  -ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
             ++R +    PLA+ +APTREL +QV  + + L        A+ +GG  + ++   ++N
Sbjct: 202 VRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIEN 261

Query: 124 GAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183
           G  ++VGTPGRL D +    ++++ +   VLDE D +L+ GFRD +  I  +    + M+
Sbjct: 262 GIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVMQIFQALSHPQVMM 321

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAI-VNILRYH 242
             +   S          +               S       + +   +     +   + H
Sbjct: 322 FSATVNSEVEKMSNSLAKNAIHISCGNPSRPNKSVKQVVIWVESKQKKQKIFEIMTSKQH 381

Query: 243 GAKNAIVFCSTRASVSR-FTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
               A+VF S+R         +      +VV++ G+ +  ER  +L+    G   V + T
Sbjct: 382 FKPPAVVFVSSRIGADLLSEAITVATGLKVVSIHGDKTMNERRESLRRFLTGEVSVVVCT 441

Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQ---RRAER 358
            V  RG+DL  +  VI  ++ ++ +  +H+ GR  R G +GM++  + +  +   R   +
Sbjct: 442 GVLGRGMDLLKVRQVILFDMPNSIDEYVHQVGRASRMGVEGMAIVFVNEEDRNLFRELVQ 501

Query: 359 LFREANVSVVWE 370
           + + A   +  E
Sbjct: 502 ILKTAGAPIPRE 513


>gi|332251086|ref|XP_003274677.1| PREDICTED: eukaryotic initiation factor 4A-I isoform 1 [Nomascus
           leucogenys]
          Length = 410

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 191/379 (50%), Gaps = 12/379 (3%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           N+ + +   +   G+   +++Q+  + P ++  DV+  AQ+G+GKT  F +++   +  +
Sbjct: 38  NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD 97

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTG-VVVAVCIGGVSVHRERRDLQNG 124
                   A  AL +APTRELA Q+ + +  L    G    A   G       ++     
Sbjct: 98  ------LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
            HI+VGTPGR+ D +  + L+  ++K  VLDEADEML  GF+D I  I        ++++
Sbjct: 152 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211

Query: 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVA-----LSDRDNAIVNIL 239
            SAT+   +  + K + +D +R+ +  E      I    + V         + + + ++ 
Sbjct: 212 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVETRGGAPEWKLDTLCDLY 271

Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
           +      A++F +TR  V   T+ +    F V A+ G++ Q+ER   ++  R G +RV I
Sbjct: 272 KTLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 331

Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359
            TD+ ARGID+  + LVI+ +L +N EN +HR GR GR GRKG+++ ++ +  +R    +
Sbjct: 332 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI 391

Query: 360 FREANVSVVWEPAPSVEAI 378
               N S+   P    + I
Sbjct: 392 ETFYNTSIEEMPLNVADLI 410


>gi|302806860|ref|XP_002985161.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
 gi|300146989|gb|EFJ13655.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
          Length = 473

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 11/370 (2%)

Query: 7   IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
           +   +  A+ + G+ + + VQ   +   +   DV+  A++G GKT  F L+    +    
Sbjct: 54  LKPELVRAIVDCGFEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLK 113

Query: 67  DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD--LQNG 124
            + +      AL +  TRELA Q+  E E        +      G    +  +D      
Sbjct: 114 GQVA------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNEC 167

Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPKKRRML 183
            HIVVGTPGR+    R K L++  ++  +LDE D+ML+    R D++ I   +P  ++++
Sbjct: 168 PHIVVGTPGRILQLTREKELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVM 227

Query: 184 MFSATISPAITTLAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYH 242
           MFSAT+S  I  + K + +D + + +  E +     +    + ++ ++++  + ++L   
Sbjct: 228 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDAL 287

Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
                ++F  +    +   K+L E  F  + +   +SQ+ER    +  ++G  R+ +ATD
Sbjct: 288 DFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATD 347

Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI-PQNMQRRAERLFR 361
           +  RGID+  + +VI+ ++  + +  LHR GR GR G KG+++  +          ++  
Sbjct: 348 LVGRGIDIERVNIVINYDMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQE 407

Query: 362 EANVSVVWEP 371
              V +   P
Sbjct: 408 RFEVDIKELP 417


>gi|328552365|gb|AEB22857.1| ATP-dependent RNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910714|gb|AEB62310.1| putative ATP-dependent RNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 376

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/361 (27%), Positives = 188/361 (52%), Gaps = 8/361 (2%)

Query: 9   QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR 68
             I E     G+   T +QE      +  KDV+  + TG+GKT+A+ L +   +  E   
Sbjct: 13  PFIAENWEASGFQEPTVIQEKAAQVIMEGKDVIAESPTGTGKTLAYTLPVLERINPEQ-- 70

Query: 69  FSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIV 128
                 P  + +AP+REL +Q+ + ++     + +     IGG +V ++   L+N  HI+
Sbjct: 71  ----KHPQVIILAPSRELVMQIFQVIQDWKKGSDLRALSLIGGANVKKQVEKLKNKPHII 126

Query: 129 VGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
            GTPGR+ + I+ K L +  +K +VLDEAD+++    R+ ++ I+ ++ + R++L FSAT
Sbjct: 127 AGTPGRVLELIQAKKLKMHEVKTIVLDEADQLVTKEHRETMKKIIKTTLRDRQLLSFSAT 186

Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAI 248
           + P    +      +   + +     + + + ++ ++    D+   ++  L      +A+
Sbjct: 187 LQPETEEVLNAIAHEPSVLRVKRNTEEKARVTHQYLVCDQRDK-VKLLQKLSRLNGMHAL 245

Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
           VF     ++S + + LA H   +  L GE  + ER+N L     G   + +ATD+AARG+
Sbjct: 246 VFVRDIGNLSVYAEKLAYHHVGLGILHGEAKKMERANILSAFERGEFPLLLATDIAARGL 305

Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVV 368
           D+ DL  VIHA++  N +  +HRSGRTGRAG++G  + ++    + + +++ +   + + 
Sbjct: 306 DIDDLPYVIHADIP-NEDGYIHRSGRTGRAGKEGTVLSLVTPMEESKLKKMAKSLGIELK 364

Query: 369 W 369
            
Sbjct: 365 E 365


>gi|315182608|gb|ADT89521.1| DEAD-box ATP dependent DNA helicase [Vibrio furnissii NCTC 11218]
          Length = 412

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 125/411 (30%), Positives = 190/411 (46%), Gaps = 21/411 (5%)

Query: 6   NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
           ++   +  AL +      T +Q   +   L  KDVL  A TGSGKT+A+ L L   L   
Sbjct: 7   SLSSELIHALPK-DVKQPTDIQALAIPELLAGKDVLALANTGSGKTLAYALPLLDKLNEN 65

Query: 66  NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
             +        AL + PTRELA+QV   +  +     +      GGV    +++ L    
Sbjct: 66  PQQ-------KALILVPTRELAIQVSEAINQVGQAFELNAVCLCGGVDKALQQQALATNP 118

Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
           HI V T GRL D +   GL++SH+  +VLDEAD +LD+GF  D++ I   +  +R+  MF
Sbjct: 119 HIFVATTGRLVDLV-NHGLDLSHIHTLVLDEADRLLDMGFWPDVQNIAMQTANQRQTAMF 177

Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
           SAT S A+   AK       +V    EN  + DI     LV    +  A++ +++ +   
Sbjct: 178 SATFSEALKEKAKQLMHAPKQVAAHQENSTNQDITETLFLVNKGSKTKALIELIQQNAWT 237

Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
             +VF   + +     K L +      AL G  SQ ER  AL   + G+  V IATD+ A
Sbjct: 238 RVLVFIGAKENADGLAKKLNKAGVSTTALHGNKSQDEREQALAQFKSGQVNVLIATDLLA 297

Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL------ 359
           RGI +  L +VI+ EL  + E  +HR GRT RAG +G+++ ++          +      
Sbjct: 298 RGIHIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNAIRHLTQR 357

Query: 360 ----FREANVSVVWEPA--PSVEAIRERDAQRILQDPLFLDSIQGDEKKMV 404
                  A   V  +P+   S  A R++ A R   +   +   QG  K+  
Sbjct: 358 ALPVQDLAGFPVTDKPSTGESKRAPRDKKANRRTNNKSSIKQFQGKVKRPA 408


>gi|167392680|ref|XP_001740252.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
 gi|165895712|gb|EDR23341.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
           SAW760]
          Length = 585

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 115/406 (28%), Positives = 192/406 (47%), Gaps = 30/406 (7%)

Query: 1   MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
           M + +N+ Q+I        Y   T +Q A +   L+ +D++  A+TG+GKT A+ + L  
Sbjct: 182 MNVCDNLLQLIKNT-----YETPTPIQCASIPIALKMRDLIALAETGTGKTFAYLIPLIQ 236

Query: 61  TLL--AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
            +L   +    + AS P AL +APTRELA+Q+ +E   L    G+ V  CIGG S+  + 
Sbjct: 237 FVLKLPKLTEETSASGPYALILAPTRELALQIQQETLKLATPFGLRVCCCIGGESIQPQI 296

Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK 178
            +L NGA IVV  PGRL D +    L +     VVLDEAD+M+DLG    + +I    P 
Sbjct: 297 EELSNGAEIVVAAPGRLKDLLSQSYLVLGQCYFVVLDEADKMIDLGLDVQVRYIFSELPS 356

Query: 179 ----------------------KRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
                                  R   M+SAT+   +  +   Y +  + ++I       
Sbjct: 357 VKDGSTEEIISMEKENASGNPSTRTTFMYSATMPSTLEKITTEYLRRPITISIGKTGNVA 416

Query: 217 SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG 276
            ++    V V  + +   +V +++       IVF + + +V     +L +     V + G
Sbjct: 417 ENVKQNVVWVEDNMKKRKLVQVIKSSSPP-TIVFVNQQKTVEEICLLLEKEKINCVGIHG 475

Query: 277 ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336
              Q ER++AL+  +  +  V +AT+V +RGID+  +  VI+ E+    E   HR GRTG
Sbjct: 476 GKRQIERTDALEGFKRKKYPVMVATNVLSRGIDIESVANVINYEMPQKIEEYTHRVGRTG 535

Query: 337 RAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERD 382
           RAG+ G ++  I +N  +      R+  V         +++  +++
Sbjct: 536 RAGKGGNAITFINENDGKEVLNQLRQILVQSRNSIPKELDSFLKKN 581


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.109    0.278 

Lambda     K      H
   0.267   0.0336    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,275,447,983
Number of Sequences: 14124377
Number of extensions: 350080431
Number of successful extensions: 1456255
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 44657
Number of HSP's successfully gapped in prelim test: 13005
Number of HSP's that attempted gapping in prelim test: 1291762
Number of HSP's gapped (non-prelim): 93143
length of query: 573
length of database: 4,842,793,630
effective HSP length: 145
effective length of query: 428
effective length of database: 2,794,758,965
effective search space: 1196156837020
effective search space used: 1196156837020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.9 bits)